cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19130465.v3
title: COins database

description: COins is a database of COI-5P sequences of insects that includes over 532,000 representative sequences of more than 106,000 species specifically formatted for the QIIME2 software platform. It was developed through a combination of automated and manually curated steps, starting from insects COI sequences available in the Barcode of Life Data System selecting sequences that comply to several standards, including a species-level identification.
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<strong>seq-degapped.qza</strong> --&gt; reference sequences
<br>
<strong>taxonomy.qza</strong> --&gt; sequences taxonomy
<br>
<strong>SklearnClassifier_COins_QIIME2_v2023.5.qza (NEW!)</strong> --&gt; naïve Bayes taxonomic classifier trained on CO<em>ins</em> (QIIME2 version 2023.5)
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<strong>SklearnClassifier_COins_QIIME2_v2022.2.qza</strong> --&gt; naïve Bayes taxonomic classifier trained on CO<em>ins</em> (QIIME2 version 2022.2)
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<strong>Sequences_metadata1.tsv</strong> --&gt;  Identification procedure of voucher specimens from which reference sequences were developed.      
Identification procedure is reported for each sequence included in CO<em>ins</em> (BOLD id reported in <em>BOLDid reference</em> column) and for all identical sequences within haplotypes that were removed at Step 5 of CO<em>ins</em> curation (those for which BOLD id is not available in <em>BOLDid reference </em>column). The haplotype to which each sequence belongs is reported in <em>Haplotype</em> column (haplotypes of each species are labeled with increasing numbers). Identification procedure information derived from sequences associated metadata provided by BOLD system.
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<strong>Sequences_metadata2.tsv </strong>--&gt;    
Identical sequences belonging to different species present within CO<em>ins</em>. 
Each row represents a cluster of identical sequences associated to different species, sequences included in the cluster are labeled with species name and BOLD id.
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DOI: 10.17632/ssfrcxm43n
title: The dataset of the manuscript PONE-D-25-00254R1 in Plos One

description: This dataset contains the data required to replicate all the findings in the paper "Influence of soil spatial variability on the reliability of sandy slopes incorporating anisotropy and non - stationarity" published in the journal Plos One.
DOI: 10.6084/m9.figshare.1559959.v1
title: Simulation_runs.zip

description: The results of simulations for both present and future scenarios for Ebola virus spill over and disease
DOI: 10.6084/m9.figshare.25406185.v1
title: Elsafty_RBCs_Slide_11

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.17632/shbh2g6xy6
title: Data for: Crustal Stretching Style Variations in the Northern Margin of the South China Sea

description: Results of the manuscript could be reproduced based on this code and the open-source data sets described in paper.
DOI: 10.6084/m9.figshare.28234787.v1
title: Pilocarpine-coated MN for sweat induction

description: Data sharing for the pilocarpine-coated microneedle study
DOI: 10.17632/4tdncjb8sy
title: Anexo VIII. Consentimiento informado a directores de escuelas para acceder al campo de investigación

description: Carta de consentimiento informado de la investigación, para directores de escuelas.
DOI: 10.17632/8r534hff7x
title: Genetic dissection of crossover mutants defines discrete intermediates in mouse meiosis (supplementary data file and high resolution figures)

description: Supplementary data file with underlying data from each figure and high resolution figures for the manuscript: "Genetic dissection of crossover mutants defines discrete intermediates in mouse meiosis" by Tolkappiyan Premkumar et al.
DOI: 10.17632/dkxwy455z3
title: Data in support of "Endonucleolytic RNA cleavage drives changes in gene expression during the innate immune response"

description: This dataset contains raw western blot image files and extra replicate western blot image files in support of the study to be published, "Endonucleolytic RNA cleavage drives changes in gene expression during the innate immune response."
DOI: 10.6084/m9.figshare.21929757.v1
title: Tectonic dismemberment and plume–ridge interaction in the Sub-Antarctic South Atlantic Ocean Basin: Confirmation from in-situ geochemical and Sr isotopic compositions of minerals

description: Supplementary Material, Geochemical Data, and Supplementary Figures generated in this study are included in the Supplementary I, Tables S1-S8, and Figures S1-S9
DOI: 10.6084/m9.figshare.28571201.v1
title: Supplementary Figure S2 Relative gene expression of Per1 in spleens of FC and MyMRKO mice.

description: Supplementary Figure S2 Relative gene expression of Per1 in spleens of FC and MyMRKO mice. Figure S2A: Relative expression of Per1 at ZT0 and ZT12. Expression is normalised to RPL32 and analysed/presented relative to untreated FC mice at ZT0. n=6-7 per timepoint, genotype, sex and treatment. Error bars represent standard error of mean (SEM). A 2-way ANOVA was performed to compare genotype and treatment combinations. P-values are represented as follows: *p&lt;0.05, **p&lt;0.01, ***p&lt;0.001, ****p&lt;0.0001. Figure S2B: Relative gene expression of Per1 at ZT4 and ZT16 after receiving either vehicle or aldosterone treatment. Expression is normalised to RPL32 and analysed/presented relative to vehicle treated FC mice at ZT4. n=6-7 per timepoint, genotype, sex and treatment. Error bars represent standard error of mean (SEM). A 2-way ANOVA was performed to compare genotype and treatment combinations. P-values are represented as follows: *p&lt;0.05, **p&lt;0.01, ***p&lt;0.001, ****p&lt;0.0001.
DOI: 10.17632/fsxhc94ry2
title: Survey on wrist extension pain in gym goers

description: Wrist extension pain is a common complaint among individuals engaging in weightlifting and other gym activities. Understanding its prevalence and associated factors is crucial for injury prevention and athlete well-being. We conducted a cross-sectional survey study through google form among gym-goers to assess the prevalence of wrist extension pain, associated risk factors, and its impact on training. A survey was conducted to validate the questionnaire before getting it filled in by the participants. A survey was undertaken involving 382 voluntary participants, encompassing individuals of all genders and age groups, who willingly completed the questionnaire. Out of 382 participants surveyed, 0.8% and 4.2% reported experiencing wrist extension pain during or after gym sessions. Factors such as improper form, overuse, and previous injuries were significantly associated with the occurrence of wrist pain. Notably, participants with wrist pain reported alterations in training routines and decreased performance. Wrist extension pain is prevalent among gym-goers and can have significant implications for training. Educating individuals on proper form and implementing preventive strategies are essential for mitigating the risk of wrist injuries in the gym setting.
DOI: 10.6084/m9.figshare.25486591.v1
title: Supplementary Material for: Efficacy and Challenges: Minimally Invasive Procedures for Trigeminal Neuralgia Treatment in Multiple Sclerosis: A Systematic Review and Meta-Analysis

description: Introduction: Trigeminal Neuralgia (TGN) poses a therapeutic challenge, particularly within the context of Multiple Sclerosis (MS). This study aims to conduct a comprehensive meta-analysis and systematic review of four less-invasive treatment modalities for TGN in MS patients, namely Gamma-Knife radiosurgery (GKRS), glycerol rhizotomy (GR), balloon compression (BC), and radiofrequency ablation (RFA).
Methods: Single-armed meta-analyses were employed to assess the overall efficacy of each treatment, while double-armed analyses compared the efficacy between different treatment options in double-armed studies. Outcomes evaluations included acute pain relief (within 1 month post-procedure), recurrence rates throughout 18 months of follow-up, and reported complication rates.
Results: The meta-analysis revealed diverse outcomes for each intervention. Gamma-Knife Radiosurgery demonstrated favorable outcomes, achieving a 77% success rate in alleviating pain among a pooled cohort of 863 patients, reinforcing its status as a viable therapeutic option. Additionally, GR, BC, and RFA exhibited efficacy, with success rates of 77%, 71%, and 80%, respectively, based on outcomes observed in 611, 385, and 203 patients. Double-armed analyses highlighted distinctions between the treatments, providing nuanced insights for clinical decision-making.
Conclusion: This meta-analysis provides a comprehensive overview of less-invasive treatments for TGN in MS patients. Gamma-Knife Radiosurgery emerges as a leading option with comparable efficacy and fewer complications. However, the study underscores the nuanced efficacy and considerations associated with GR, BC, and RFA. The findings offer valuable insights for clinicians navigating treatment choices in this challenging patient population, considering acute pain relief, recurrence rates, and complication profiles.
DOI: 10.6084/m9.figshare.15058182.v1
title: Additional file 1 of Transcriptional landscape of PTEN loss in primary prostate cancer

description: Additional file 1: Supplementary Tables. Excel spreadsheet containing the raw results of all bioinformatics analysis.
DOI: 10.17632/g6ry7sph4t
title: LINF_100018900

description: Rab2; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hwv9ywscwj
title: Database: Supplier evaluation based on customer value perception: an approach combining sentiment analysis and fuzzy inference

description: Data associated to the research paper: "Supplier evaluation based on customer value perception: an approach combining sentiment analysis and fuzzy inference", submitted to the Applied Soft Computing Journal.
DOI: 10.17632/srn9ntbmb6
title: Supplementary materials for: Scour effects on vertical effective stresses and lateral responses of pile groups in sands

description: 1. Two Matlab scripts for analyzing the laterally loaded pile groups under local scour conditions using the proposed two methods: Improved Analytical Method (IAM) and Influence Depth Method (IDM) as described in the manuscript of "Scour effects on vertical effective stresses and lateral responses of pile groups in sands"; 2. Supplementary data (figures and tables) discussed in the manuscript of "Scour effects on vertical effective stresses and lateral responses of pile groups in sands".
DOI: 10.17632/t5vg2ppbxf
title: Supplementary Data: Lymphatic Differentiation and Microvascular Proliferation in Benign Vascular Lesions of Skin and Soft-Tissue: Diagnostic Features Following the International Society for The Study of Vascular Anomalies Classification

description: This is the supplementary data for the study entitled: Lymphatic Differentiation and Microvascular Proliferation in Benign Vascular Lesions of Skin and Soft-Tissue: Diagnostic Features Following the International Society for the Study of Vascular Anomalies Classification - A Retrospective Study
DOI: 10.6084/m9.figshare.14390768.v3
title: sleep-diary-sleepmeter

description: Annotated daily sleep diary over years of a subject (author and scientific researcher) with the non-24 circadian rhythm disorder.<br>The sleep diary was manually curated using the Sleepmeter app on Android (pro version). It is duly annotated with all the controlled factors such as use of light therapy, light exposure (morning? evening?), disturbances such as noise or appointments, diet composition and timing, melatonin use, etc.<br>This should be considered the baseline biomarker of the subject's sleep-wake patterns, it is the ground truth for actigraphy and other biomarkers. The sleep diary was duly curated to minimize errors and was updated continuously everyday, once at bedtime by tapping a widget to mark the fall asleep time (with a delay from bedtime, the exact fall asleep time may not be 100% accurate but it was corrected the morning after to try to match as much as possible the subjectively estimated sleep onset delay), and on wake up by tapping again the widget as soon as the subject woke up, and then noting all the relevant comments and tags.<br>Most tags and comments pertain to the day before, although some tags and comments pertain to what happens in the day after (in the latter case, this is usually denoted in the tag name).<br>Use the latest sleep diary, it contains the whole history. Other sleep diaries are past versions, which may have some differences such as renamed tags or missing comments that were added aposteriori (sometimes months later when the culprit of a major sleep disturbance was discovered, such as secondary pernio due to long covid).<br>The sleep diary currently covers almost 2 years. Keep in mind that during the period of 2020-2022, the data was acquired while in lockdown or pseudo-lockdown most of the time due to the SaRS-nCOV-2 (COVID-19) pandemic. More data will be added in the future.<br>The files contain the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.
DOI: 10.6084/m9.figshare.28468634.v1
title: Data.xlsx

description: Data of HAMS, PSO and SAPSO
DOI: 10.17632/b9y629r3yy
title: Landslide causative factor dataset for landslide susceptibility analysis on the Tibetan Plateau

description: This CSV file contains the landslide causative factor dataset used for susceptibility analysis on the Tibetan Plateau in the study titled “Landslide Susceptibility Analysis on the Tibetan Plateau Based on the Mamba Architecture: An Improved Mambular Model Integrating Dynamic Feature Gate and Local Interaction”. The dataset includes both landslide presence (label) and key environmental variables commonly related to landslide occurrence.
DOI: 10.17632/t5pkrb2mwd
title: Impact of Target-Audience Characteristics on  the Portrayal of Women in TV Commercials.

description: Source Data, Descriptive Analysis, Anova
DOI: 10.6084/m9.figshare.19233573.v1
title: HILIC negative mode raw data

description: Samples (2-10 mg) were extracted with 2:5:2 CDCl3:CD3OD:H2O, ground, and centrifuged to remove particulate.<br>Extracts (10 uL) were analyzed with HILIC-LC-MS using an Agilent Poroshell 120 HILIC-Z column (2.1 x 100 mm, 1.9 um particle size) at 35 C. Solvent A: 95/5 water/acetonitrile with 0.2% acetic acid and 5 mM ammonium acetate; Solvent B: 95/5 acetonitrile/water with 5 mM ammonium acetate. <br>Gradient (0.3 mL/min):99% B for 1 min, decrease to 40% B over 9 min, increase to 99% B over 6 min.
DOI: 10.6084/m9.figshare.20459799.v1
title: pollutant.xlsx

description: Mass concentrations of pollutant
DOI: 10.6084/m9.figshare.3562275.v1
title: Appendix A. Description of environmental gradients in study area, tree community data, trait data and additional methodology and results of the STEPCAM approach.

description: Description of environmental gradients in study area, tree community data, trait data and additional methodology and results of the STEPCAM approach.
DOI: 10.4121/uuid:7f63d1bd-2b41-43e7-a458-b969d23c8e2d
title: Dongdaqiao hydrological station dataset and Gujiaying water quality dataset

description: The dataset contains the daily discharge of Dongdaqiao station and the water quality monitoring data of Gujiaying section, and was used in the hydrodynamic-water quality model to calculate and predict the flow and the pollutant concentrations in the Guishui river, Beijing, China.
DOI: 10.17632/43bnmpz6b7
title: Recherches sur le Néogène et le Quaternaire marins de la Côte Atlantique du Maroc

description: NOTES ET MÉMOIRES, N° 99
DOI: 10.6084/m9.figshare.13345295.v1
title: Garrison-et-al--AJB2021--phrag-data.csv

description: Stomatal and physiological data of Phragmites australis grown in open-top chambers at the Global Change Research Wetland, Maryland, USA. Data collected for plants grown in 2013 and 2018. Stomatal features were measured using ESEM and gwmax calculated as per Taylor et al. 2012.<br>
DOI: 10.17632/98bhm5zbrd
title: Efficient computation of Coulomb and exchange integrals for multi-million atom nanostructures

description: Atomistic modeling of nanostructures such as quantum dots or nanowires often involves numbers of atoms reaching and even exceeding well beyond 1 million. Such a large quantity of atoms presents a very complex computational challenge especially at a stage of many-body calculation where numerous Coulomb matrix elements need to be calculated. Here we present a practical solution to this problem by performing calculations in the momentum space and utilizing fast Fourier transform combined with a memory-efficient way to compute the convolution that overcomes the problem of spurious interactions with quasi-charges from other super-cells. Finally, calculation of multiple integrals is optimized by reducing the problem to finding a minimum vertex cover of a graph. All these algorithms are implemented and presented here in a self-contained and highly parallelized computer program named Coulombo. Coulombo demonstrates quasi-linear scaling of computational time of Coulomb matrix elements with respect to the number of points in the computational box and, at the same time, significantly reduced memory demand. The proposed solution can have potential applications not only in the realm of nano-physics, but could be applied to other mesoscopic simulations or large-scale quantum chemistry problems.
DOI: 10.6084/m9.figshare.19499576.v1
title: patches and local annotations, slide 073, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.21227/fhje-m837
title: "Datasets of Acute Pancreatitis Patients from MIMIC - IV, MIMIC - III subsets and eICU"

description: "This dataset encompasses data from the MIMIC - \u2163, MIMIC - \u2162 subsets, and the eICU, focusing on patients with acute pancreatitis. It includes a comprehensive range of clinical information, such as patient demographics, and laboratory test results."
DOI: 10.17632/7f22n9v7hp
title: Data on different particulate matter profiles produced in laboratory from construction activity and outdoor monitoring

description: PM1, PM2.5, and PM10 data from construction activity in lab and outdoor monitoring settings using low-cost sensor devices including Alphasense OPC-N3, Soarability Sniffer4d V2, and Plantower PMS5003.
It cab be used for comparing their readings in both settings to find out their accuracy, precision, and reliability while using Alphasense OPC-N3 as a reference sensor for comparison purpose.
DOI: 10.17632/swkr5w3kx4
title: Numerical analysis and integration of dynamical systems and the fractal dimension of boundaries

description: The set of Maple routines that comprises the package Ndynamics has been improved. Apart one of the main motivations for its creation, namely, the routines to calculate the fractal dimension of boundaries (via box counting), the package deals with the numerical evolution of dynamical systems and provide flexible plotting of the results. The package also brings an initial conditions generator, a numerical solver manager, and a focusing set of routines that allow for better analysis of the graphical display of the results. Many new Maple-in-built numerical solvers are now programmed and available for the user of the package. The novelty that the package presented at the time of its release, an optional numerical interface, is maintained and updated.
DOI: 10.17632/57869zvy6y
title: Residential waste data (hourly,meshgin-shahr,iran)

description: Residential Waste Data (Hourly, Meshgin-Shahr, Iran)

The Residential Waste Data for Meshgin-Shahr provides an hourly breakdown of household waste generation in a typical medium-sized house within the region. This dataset was generated using a Python-based simulation model, incorporating real-world waste generation trends and daily household patterns.

Key Features:
Source: Computed using a Python algorithm, based on an estimated 1.88 kg of daily waste per household.
Resolution: Hourly waste generation data, capturing daily variations and peak times.
Geographical Scope: Focused on Meshgin-Shahr, Iran, reflecting local waste production characteristics.
Methodology: The model considers peak waste generation hours, ensuring realistic distribution throughout the day.
Applications: Useful for waste management planning, sustainability studies, urban resource optimization, and environmental impact assessments.
This dataset serves as a crucial tool for waste management authorities, environmental researchers, and policymakers aiming to enhance waste reduction and recycling strategies in Meshgin-Shahr.
DOI: 10.17632/s4pyb9k2w8
title: Dataset of original studies that reported public knowledge of telephone numbers for medical emergencies

description: This dataset contains the results of analysis of original peer-reviewed articles published in English since 2004 that reported the percentage of persons who knew telephone numbers for activating emergency medical services.
The search of eligible papers was carried out in May 2024 in PubMed, Google Scholar, through the Google web search, and in reference lists of relevant publications.
The dataset table collected the following data (sheet #1 "Dataset"): author(s), year of publication, study design, study geography, study participants, sample size, data collection settings, type of a question to evaluate knowledge of emergency numbers, percentage of subjects who knew emergency numbers, factors found to be associated and not associated with knowledge of emergency numbers, and recommendations formulated by the authors based on the research results. Sheet #2 ("Bibliography") of the dataset file contains a full bibliography of the articles included in the analysis (n=48).
The dataset was utilised for performing the related scoping review.
DOI: 10.6084/m9.figshare.1544714.v1
title: Skin microbiome surveys are strongly influenced by experimental design

description: Culture-independent studies to characterize skin microbiota are increasingly common, due in part to affordable and accessible sequencing and analysis platforms. Compared to culture-based techniques, DNA sequencing of the bacterial 16S ribosomal RNA (rRNA) gene or whole metagenome shotgun (WMS) sequencing provide more precise microbial community characterizations. Most widely used protocols were developed to characterize microbiota of other habitats (i.e. gastrointestinal), and have not been systematically compared for their utility in skin microbiome surveys. Here we establish a resource for the cutaneous research community to guide experimental design in characterizing skin microbiota. We compare two widely sequenced regions of the 16S rRNA gene to WMS sequencing for recapitulating skin microbiome community composition, diversity, and genetic functional enrichment. We show that WMS sequencing most accurately recapitulates microbial communities, but sequencing of hypervariable regions 1-3 of the 16S rRNA gene provides highly similar results. Sequencing of hypervariable region 4 poorly captures skin commensal microbiota, especially Propionibacterium. WMS sequencing, which is resource- and cost-intensive, provides evidence of a community’s functional potential; however, metagenome predictions based on 16S rRNA sequence tags closely approximate WMS genetic functional profiles. This work highlights the importance of experimental design for downstream results in skin microbiome surveys. This project folder includes intermediate files generated during the analysis of the dataset and the corresponding analysis scripts used to generate the figures in the paper.