cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15087756
title: Thermal preference plasticity in ectotherms: Integrating temperature affinity and thermoregulation precision

description: #### Publication title: Thermal preference plasticity in ectotherms: integrating temperature affinity and thermoregulation precision

#### Publication authors: Gwenaëlle Deconninck, Nicolas Meyer, Hervé Colinet, Sylvain Pincebourde

#### Code author: Gwenaëlle Deconninck

#### Last Update: March 2025

 

This repository houses the code (‘Rcode_Tp_framework’.R) and data sets that were used for the article ‘Thermal preference plasticity in ectotherms: integrating temperature affinity and thermoregulation precision’ in The American Naturalist.  

 

ABSTRACT

Thermal preference (Tp) prevents ectotherms from encountering sublethal temperatures. Its plasticity likely modulates the importance of behavioral thermoregulation under changing conditions. While it has been widely recognized that the plasticity of Tp varies across ontogeny, the plasticity of this trait across life stages is poorly understood. We propose a novel conceptual framework relating two plastic components of Tp: its mean, which indicates temperature affinity, and its variance, which informs on the precision of behavioral thermoregulation. We tested this framework by measuring Tp variations across life stages of an insect model after several generations under contrasting developmental temperatures. Tp plastic responses differed among life stages. Generally, we obtained a bell-shape relationship between temperature affinity and precision of thermoregulation, indicating a strategy to avoid suboptimal and supra-optimal temperature extremes in D. melanogaster, but not in all life stages. We highlight the need to change the paradigm underlying the study of Tp beyond the simple use of mean or median.

 

R session info:

- R version 4.1.2 (2021-11-01)

- Platform: x86_64-apple-darwin17.0 (64-bit)

- Running under: macOS 13.1

 

Metadata for the data files are supplied below:

 

File ‘ad_ttes_generations.txt’ (contains all data for adults):

- name: id summarising main infos for Drosophila melanogaster individuals

- sexe: M/F for males/females

- age: V/F for virgin young flies (2 days) / mature flies (12 days)

- traitement: Rearing temperature in °C: 22, 25, 28, 23.5-26.5, 22-28 

- generation: G1: Generation 1, G3: Generation 3

- rampe: Gradient lane from A to F

- Tp: Thermal preference (°C)

 

File ‘L3_ttes_generations.txt’ (contains all data for larvae):

- stade: L3: larval stage 3; L3W: wandering larvae

- traitement: Rearing temperature in °C: 22, 25, 28, 23.5-26.5, 22-28 

- generation: G1: Generation 1, G3: Generation 3

- rampe: Gradient lane from A to F

- Tp: Thermal preference (°C)

 

For any inquiries or bugs, please contact corresponding author Gwenaëlle Deconninck (gwenaelle.deconninck@icloud.com).
DOI: 10.15468/dl.89ucq6
title: Occurrence Download

description: A dataset containing 23241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((109.4475 20.12722,111.2382 20.12722,111.2382 21.74101,109.4475 21.74101,109.4475 20.12722))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 23241 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001778-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28667636
title: Phylogeny derived from a maximum likelihood (ML) analysis of the ITS and nrLSU sequences from <i>Gautieria</i> species

description: A new species of false truffle was discovered in Zixishan Mountain, Yunnan Province, China. Through morphological examination and multigene phylogenetic analysis based on ITS and nrLSU sequences of the genus <i>Gautieria，</i>the species is described as <i>Gautieria zixishanensis</i> sp. nov.
DOI: 10.15468/dl.gsqz2n
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium usambarense Taub., Trifolium usambarense Taub. ex Engl., 1894)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 222 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001779-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vdvp6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nanorana unculuanus (Liu, Hu & Yang, 1960)"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001780-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67qqfj
title: Occurrence Download

description: A dataset containing 252348 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Geometry POLYGON ((-16 40, -16 70, 24 70, 24 40, -16 40))",
 "TaxonKey is Anthozoa"
 ]
}

 The dataset includes 252348 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001773-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q26gdt
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nanorana ventripunctata Fei & Huang, 1985"
 ]
}

 The dataset includes 85 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001781-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48505/nims.5348
title: Dynamical visualization of attractively interacting single vortices in type-II/1 superconducting Nb by magneto-optical imaging

description: This is the dataset for the paper, "Dynamical visualization of attractively interacting single vortices in type-II/1 superconducting Nb by magneto-optical imaging", S. Ooi, et al. 

 This includes
- Processed image files (multi-tiff), used in Fig. 2, Fig. 3, Fig. 4, and their corresponding movies,
- The original images (image registration applied) used for the above processed images,
- Excel files of the parameters such as temperature, set magnetic field (uncalibrated), and time for the multi-tiff images,
- Data used in Fig. 5,
- Readme.txt.
DOI: 10.15468/dl.mrs793
title: Occurrence Download

description: A dataset containing 858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nanorana yunnanensis (Anderson, 1879)"
 ]
}

 The dataset includes 858 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001782-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxaw5z
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium vavilovii Eig)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 267 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001783-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewx34c
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Primula oreodoxa Franch."
 ]
}

 The dataset includes 91 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001785-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vykan
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium vernum Phil.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001787-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdaxmh
title: Occurrence Download

description: A dataset containing 23787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Indonesia, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dipterocarpaceae"
 ]
}

 The dataset includes 23787 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001786-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/x7nk-b929
title: Knowledge Distillation Method Comparison

description: Artificial Intelligence (AI) has increasingly influenced modern society, recently in particular through significant advancements in Large Language Models (LLMs). However, high computational and storage demands of LLMs still limit their deployment in resource-constrained environments. Knowledge distillation addresses this challenge by training a smaller language model (student) from a larger one (teacher). Previous research has introduced several distillation methods for both generating training data and training the student model. Despite their relevance, the effects of state-of-the-art distillation methods on model performance and explainability have not been thoroughly investigated and compared. In our work, we enlarge the set of available methods by applying Critique-Revision Prompting to distillation and by synthesizing existing methods. For these methods, we provide a systematic comparison based on a popular commonsense question-answering dataset. While we measure performance via student model accuracy, we employ a humangrounded study to evaluate explainability. We contribute new distillation methods and their comparison in terms of both performance and explainability.
DOI: 10.15468/dl.kttk35
title: Occurrence Download

description: A dataset containing 3209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium vesiculosum Savi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3209 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001788-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/4gsd-p846
title: Knowledge Distillation Method Comparison

description: Artificial Intelligence (AI) has increasingly influenced modern society, recently in particular through significant advancements in Large Language Models (LLMs). However, high computational and storage demands of LLMs still limit their deployment in resource-constrained environments. Knowledge distillation addresses this challenge by training a smaller language model (student) from a larger one (teacher). Previous research has introduced several distillation methods for both generating training data and training the student model. Despite their relevance, the effects of state-of-the-art distillation methods on model performance and explainability have not been thoroughly investigated and compared. In our work, we enlarge the set of available methods by applying Critique-Revision Prompting to distillation and by synthesizing existing methods. For these methods, we provide a systematic comparison based on a popular commonsense question-answering dataset. While we measure performance via student model accuracy, we employ a humangrounded study to evaluate explainability. We contribute new distillation methods and their comparison in terms of both performance and explainability.
DOI: 10.15468/dl.n4rtrt
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Primula dumicola W.W.Sm. & Forrest"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001789-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e224262v1
title: Growth theory appendices

description: Collected appendices of published growth theories for replication purposes
DOI: 10.15468/dl.dnvprz
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trigonella balansae Boiss. & Reut.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 498 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001791-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.878r8e
title: Occurrence Download

description: A dataset listing the 3822 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-25.24029 62.00041,-12.38957 62.00041,-12.38957 67.18868,-25.24029 67.18868,-25.24029 62.00041))",
 "TaxonKey is Fungi"
 ]
}

 The dataset's 3822 records were derived from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001784-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vfchh
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhagoletis cingulata (Loew, 1862)"
 ]
}

 The dataset includes 672 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001792-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px7z67
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trigonella corniculata Sibth. & Sm., Trigonella corniculata (L.) L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 354 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001793-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fx5rms
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nigeria",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Khaya senegalensis (Desv.) A.Juss."
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001794-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28667525
title: Urban vacant land of 36 major Chinese cities

description: The data include two parts: (1) urban vacant land of 36 major Chinese cities (in shapefile format), and (2) codes and data used for automatic vacant land identification.<br>Urban vacant land is a growing issue worldwide. The study is aimed to realize large-scale automatic identification of urban vacant land. A framework based on deep learning techniques is proposed to extract urban vacant land of 36 major Chinese cities through semantic segmentation of high-resolution remote sensing images. The automatic identification framework is proved to be accurate and efficient, with strong robustness. This method is expected to serve as a practical approach in various countries and regions. The data of urban vacant land of 36 cities can be used in further studies.
DOI: 10.15468/dl.4ngu67
title: Occurrence Download

description: A dataset containing 199203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France)",
 "TaxonKey is Alnus glutinosa (L.) Gaertn."
 ]
}

 The dataset includes 199203 records from 1614 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001790-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8554045
title: BBC News
DOI: 10.15468/dl.i6doxj
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gracilinanus agilis (Burmeister, 1854)"
 ]
}

 The dataset includes 240 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024197-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mxudw
title: Occurrence Download

description: A dataset containing 57143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Columba livia J.F.Gmelin, 1789"
 ]
}

 The dataset includes 57143 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186915-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i1lkkd
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus pedunculata (Pall.) Maxim."
 ]
}

 The dataset includes 62 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024197-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymck3f
title: Occurrence Download

description: A dataset containing 135902 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atlapetes Wagler, 1831"
 ]
}

 The dataset includes 135902 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186926-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.age29x
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boopis castillonii (Hicken) Pontiroli"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024197-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvycpe
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicranella schreberiana var. schreberiana"
 ]
}

 The dataset includes 68 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151636-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gddcoh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus dinghuensis C.C.Huang"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024199-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tavaee
title: Occurrence Download

description: A dataset listing the 9974 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.17053 20.60194,-86.7865 20.60194,-86.7865 21.25866,-89.17053 21.25866,-89.17053 20.60194))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 9974 records were derived from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005301-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skf8rt
title: Occurrence Download

description: A dataset containing 2963 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysemys picta picta"
 ]
}

 The dataset includes 2963 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040598-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phubbr
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus trichamygdalus Hand.-Mazz."
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024200-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8jcrq
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isoetes lacustris L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 276 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175737-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wxvfv
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diacheila arctica (Gyllenhal, 1810)"
 ]
}

 The dataset includes 101 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024201-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.