cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/5c14cdfd5055200235035bf1c7cdfea0
title: Bonanza Creek LTER: Annual Active Layer Depths from 1972 to Present in the Wickersham Fireline Sites near Fairbanks, Alaska

description: In June of 1971 the Wickersham fire burned 6313 ha and provided an opportunity to study various fire effects. When wildfire burns through a northern black spruce forest there is usually a subsequent increase in depth of thaw, due to the reduction in the depth of the organic layer. The construction of firelines with heavy machinery involves the complete removal of the organic layer and results in an even greater increase in active layer. This study was designed as a long-term comparison between depth of thaw on firelines, burned and unburned open black spruce forest underlain by ice rich permafrost.
DOI: 10.6073/pasta/eb6ec2c2bb0b7b890b64d1f25425e78e
title: Bonanza Creek LTER: Annual Active Layer Depths from 2002 to Present in the Survey Line Fire near Fairbanks, Alaska

description: In 2001 the Survey Line Fire burned an area of black spruce forest along the Tanana River adjacent to the Bonanza Creek Experimental Forest. In 2002 two research sites were established within the burn, one in a dry area and one in a wet area. When wildfire burns through a northern black spruce forest there is usually a subsequent increase in depth of thaw, due to the reduction in the depth of the organic layer. Thaw depth is being measured annually at tweny points within each of these sites.
DOI: 10.6073/pasta/8e15ebe6cdc7c33cf543b85e4238ecd1
title: Bonanza Creek LTER: Annual Active Layer Depths from 2004 to Present in the Boundary Fire Fireline near Fairbanks, Alaska

description: In 2004 the Boundary Fire burned an area within the Caribou Poker Creeks Research Watershed providing an opportunity to study various fire effects. When wildfire burns through a northern black spruce forest there is usually a subsequent increase in depth of thaw, due to the reduction in the depth of the organic layer. The construction of firelines with heavy machinery involves the complete removal of the organic layer and results in an even greater increase in active layer. This study was designed as a long-term comparison between depth of thaw on firelines, burned and unburned black spruce forest underlain by ice rich permafrost. This study will allow us to compare thaw depths from recent firelines to those studied at the Wickersham and Bonanza Creek fireline study sites. Within the fireline bulldozers were used to knock down and in some cases remove, the trees and organic layer. Within the safety zone an area approximately 30 m x 30 m was cleared to mineral soil. After the fire was out an excavator was used to return the organic material to the fireline and safety zones.
DOI: 10.6084/m9.figshare.14456312.v4
title: ibutton-left-nondominant-upper-arm-cotton-sports-wristband-ventral-exterior-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the ventral side of the forearm, by being attached with a velcro to the exterior of a cotton sports wrist band.<br>This dataset is meant to capture ambient temperature. It is placed just beside the main skin sensor but on the exterior of the cotton wristband instead of the interior, so that this sensor reflects the ambient temperature at the exact site where the main skin sensor is. This should be used in combination with the ibutton-left-nondominant-upper-arm-cotton-sports-wristband-5min dataset (main skin sensor, placed on the radial artery).<br>Start using the files from the datetime (in filename): 071621 and onward. Indeed, earlier logs are redundant. Concatenate every files beyond this date to get the full log, each file containing one distinct period of time.<br>Earlier logs contain the same data as 071621, as initially it was thought that the sensor had enough memory to collect 1 year of data, but this was in fact incorrect (it's about 6-7 months of data). So it's necessary to clear the sensor's data before collecting a new period.
DOI: 10.6084/m9.figshare.14456314.v4
title: ibutton-left-nondominant-upper-arm-cotton-sports-wristband-dorsal-interior-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the dorsal side of the forearm, at the opposite of the radial artery, by being attached with a velcro to the interior of a cotton sports wrist band.<br>This dataset is meant to capture skin temperature at another site than the radial artery, so that the dataset may be useful for spurious temperature changes regression. This should be used in combination with the ibutton-left-nondominant-upper-arm-cotton-sports-wristband-5min dataset.<br>Start using the files from the datetime (in filename): 071621 and onward. Indeed, earlier logs are redundant. Concatenate every files beyond this date to get the full log, each file containing one distinct period of time.<br>Earlier logs contain the same data as 071621, as initially it was thought that the sensor had enough memory to collect 1 year of data, but this was in fact incorrect (it's about 6-7 months of data). So it's necessary to clear the sensor's data before collecting a new period.
DOI: 10.6084/m9.figshare.14384819.v5
title: ibutton-left-nondominant-upper-arm-cotton-sports-wristband-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the radial artery on the forearm (between elbow and wrist, about in the middle with a slightly changing position regularly to avoid skin damage due to continuous skin obstruction and warmth), by being attached with a velcro to the interior of a cotton sports wrist band. See the works of Dr. Antonio Martinez Nicolas for more details on wrist skin temperature rhythm and WTIO.<br>The procedure is described in: https://pubmed.ncbi.nlm.nih.gov/18761026/<br>This dataset can be used alone or in combination with ibutton-left-nondominant-upper-arm-cotton-sports-wristband-dorsal-interior-5min and ibutton-left-nondominant-upper-arm-cotton-sports-wristband-ventral-exterior-5min to regress dorsal skin temperature and ambient temperature respectively.<br>Start using the files from the datetime (in filename): 071621 and onward. Indeed, earlier logs are redundant. Concatenate every files beyond this date to get the full log, each file containing one distinct period of time.<br>Earlier logs contain the same data as 071621, as initially it was thought that the sensor had enough memory to collect 1 year of data, but this was in fact incorrect (it's about 6-7 months of data). So it's necessary to clear the sensor's data before collecting a new period.<br>There is unfortunately some missing data from 2021-07-06 to 2021-07-16 because the internal memory was unexpectedly already filled (it should have been able to store more than a year according to the manufacturer's documentation). The maximum number of samples seems to be 62720.
DOI: 10.5281/zenodo.5558050
title: spn-probe

description: Trace testing the Internet Archive's SavePageNow service
DOI: 10.6069/f66r-1203
title: Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity

description: Lipids play many biological roles including membrane formation, protection, insulation, energy storage, and cell division. These functions have brought great interest to lipidomic studies for understanding their dysregulation in toxic exposure, inflammation, and diseases. However, lipids have shown to be analytically challenging due to their highly isomeric nature and vast concentration ranges in biological matrices. Therefore, powerful multidimensional techniques such as those integrating liquid chromatography, ion mobility spectrometry, collision induced dissociation, and mass spectrometry (LC-IMS-CID-MS) have recently been implemented to separate lipid isomers as well as provide structural information and increased feature identification confidence. These multidimensional datasets are however extremely large and highly complex, resulting in challenges in data processing and annotation. Here, we have overcome these challenges by developing sample-specific multidimensional libraries using the freely available software Skyline. Specifically, the human plasma library developed for this work contains over 500 unique, experimentally validated lipids, which is combined with adapted Skyline functions for highly confident lipid annotations such as indexed retention time (iRT) for retention time prediction and IMS drift time filtering for increased sensitivity and selectivity. For broad comparison with other lipidomic studies, this human plasma database was initially used to annotate LC-IMS-CID-MS data from a NIST SRM 1950 extract, giving comparable results to previous studies. This workflow was then utilized to assess matched plasma and bronchoalveolar lavage fluid (BALF) samples from patients with varying degrees of smoke inhalation injury to identify potential lipid-based patient prognostic and diagnostic markers.
DOI: 10.5281/zenodo.5558057
title: spn-probe

description: Trace testing the Internet Archive's SavePageNow service
DOI: 10.5281/zenodo.5558049
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.5517/ccdc.csd.cc27sfgy
title: CCDC 2079060: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Dodonov, Weixing Chen, Li Liu, Vladimir G. Sokolov, Evgeny V. Baranov, Alexandra A. Skatova, Yanxia Zhao, Biao Wu, Xiao-Juan Yang, Igor L. Fedushkin|2021|Inorg.Chem.|60|14602|doi:10.1021/acs.inorgchem.1c01581
DOI: 10.5517/ccdc.csd.cc27sfl2
title: CCDC 2079064: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Dodonov, Weixing Chen, Li Liu, Vladimir G. Sokolov, Evgeny V. Baranov, Alexandra A. Skatova, Yanxia Zhao, Biao Wu, Xiao-Juan Yang, Igor L. Fedushkin|2021|Inorg.Chem.|60|14602|doi:10.1021/acs.inorgchem.1c01581
DOI: 10.5517/ccdc.csd.cc27sfm3
title: CCDC 2079065: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Dodonov, Weixing Chen, Li Liu, Vladimir G. Sokolov, Evgeny V. Baranov, Alexandra A. Skatova, Yanxia Zhao, Biao Wu, Xiao-Juan Yang, Igor L. Fedushkin|2021|Inorg.Chem.|60|14602|doi:10.1021/acs.inorgchem.1c01581
DOI: 10.5517/ccdc.csd.cc28lqj4
title: CCDC 2103366: Experimental Crystal Structure Determination

description: Related Article: Zi-Rong Zeng, Wang-Sheng Li, Bastien Nay, Pei Hu, Hai-Yan Zhang, Hong Wang, Xu-Wen Li, Yue-Wei Guo|2021|Org.Lett.|23|7575|doi:10.1021/acs.orglett.1c02772
DOI: 10.5281/zenodo.5558081
title: ANALISIS KATEGORI PENILAIAN PEMBELI PADA TOKO ONLINE BERDASARKAN FITUR ULASAN DENGAN MENGGUNAKAN WEB SCRAPING

description: ANALISIS KATEGORI PENILAIAN PEMBELI PADA TOKO ONLINE BERDASARKAN FITUR ULASAN DENGAN MENGGUNAKAN WEB SCRAPING
DOI: 10.5281/zenodo.5558080
title: ANALISIS KATEGORI PENILAIAN PEMBELI PADA TOKO ONLINE BERDASARKAN FITUR ULASAN DENGAN MENGGUNAKAN WEB SCRAPING

description: ANALISIS KATEGORI PENILAIAN PEMBELI PADA TOKO ONLINE BERDASARKAN FITUR ULASAN DENGAN MENGGUNAKAN WEB SCRAPING
DOI: 10.21227/c0pm-1t78
title: The simulation results for the submitted manuscript

description: This is the simulation results for the submitted manuscript entitled "Enhancing transmission efficiency of mega-constellation LEO satellite networks".
DOI: 10.5439/1824772
title: ARM: CAMRIDGE

description: camsite
DOI: 10.5439/1824773
title: ARM: CAMGNDRADPIRMOVIE

description: caminst
DOI: 10.5439/1824774
title: ARM: CAMRIDGEMOVIE

description: camsite
DOI: 10.5439/1824775
title: ARM: CAMGNDRADPIR

description: caminst
DOI: 10.5439/1824776
title: ARM: CAMGNDRADPSPMOVIE

description: caminst
DOI: 10.5439/1824777
title: ARM: CAMGNDRADPSP

description: caminst
DOI: 10.25505/fiz.icsd.cc28zjph
title: CSD 2114717: Experimental Crystal Structure Determination

description: Related Article: V.L. Show, A.R. Johnson|2021|ICSD Communication|||
DOI: 10.6084/m9.figshare.16778334
title: Additional file 2 of Krüppel-homolog 1 exerts anti-metamorphic and vitellogenic functions in insects via phosphorylation-mediated recruitment of specific cofactors

description: Additional file 2. The individual data values for Fig. 3B-E, Fig. 4B-E, Fig. 5B, D, Fig. 6B-D, Fig. S2A and Fig. S3.
DOI: 10.6084/m9.figshare.16778334.v1
title: Additional file 2 of Krüppel-homolog 1 exerts anti-metamorphic and vitellogenic functions in insects via phosphorylation-mediated recruitment of specific cofactors

description: Additional file 2. The individual data values for Fig. 3B-E, Fig. 4B-E, Fig. 5B, D, Fig. 6B-D, Fig. S2A and Fig. S3.
DOI: 10.6084/m9.figshare.16778348.v1
title: Additional file 1 of Comparison of content and psychometric properties for assessment tools used for brain tumor patients: a scoping review

description: Additional file 1. All identified assessment tools, frequency and references.
DOI: 10.6084/m9.figshare.16778348
title: Additional file 1 of Comparison of content and psychometric properties for assessment tools used for brain tumor patients: a scoping review

description: Additional file 1. All identified assessment tools, frequency and references.
DOI: 10.6084/m9.figshare.15032929
title: Additional file 1 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 1: Table S1. Positive sand fly localities in the Republic of Moldova.
DOI: 10.6084/m9.figshare.15032929.v1
title: Additional file 1 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 1: Table S1. Positive sand fly localities in the Republic of Moldova.
DOI: 10.6084/m9.figshare.15032932
title: Additional file 2 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 2: Table S2. Information on Phlebotomus papatasi specimens used for haplotype network constructed by PopArt using TCS method.
DOI: 10.6084/m9.figshare.15032932.v1
title: Additional file 2 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 2: Table S2. Information on Phlebotomus papatasi specimens used for haplotype network constructed by PopArt using TCS method.
DOI: 10.6084/m9.figshare.15032938
title: Additional file 3 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 3: Table S3. Engorged P. papatasi females analyzed for identification of blood origin and indicates which methods were applied.
DOI: 10.6084/m9.figshare.15032938.v1
title: Additional file 3 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 3: Table S3. Engorged P. papatasi females analyzed for identification of blood origin and indicates which methods were applied.
DOI: 10.6084/m9.figshare.15032941
title: Additional file 4 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 4: Table S4. cox1 sequence divergence between Phlebotomus sp. (Adlerius) from Moldova and some members of the subgenus Adlerius based on K2P nucleotide substitution model. Intraspecific distances were indicated on the diagonal line.
DOI: 10.6084/m9.figshare.15032941.v1
title: Additional file 4 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 4: Table S4. cox1 sequence divergence between Phlebotomus sp. (Adlerius) from Moldova and some members of the subgenus Adlerius based on K2P nucleotide substitution model. Intraspecific distances were indicated on the diagonal line.
DOI: 10.6084/m9.figshare.15032950.v1
title: Additional file 6 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 6: Figure S2. Numbers of specimens trapped by the CDC traps during the course of active sand fly season in 2015 and 2017 in Ceadir-Lunga.
DOI: 10.6084/m9.figshare.15032950
title: Additional file 6 of Phlebotomine sand fly survey in the Republic of Moldova: species composition, distribution and host preferences

description: Additional file 6: Figure S2. Numbers of specimens trapped by the CDC traps during the course of active sand fly season in 2015 and 2017 in Ceadir-Lunga.
DOI: 10.6084/m9.figshare.16778477.v1
title: Additional file 2 of Taxonomy-aware, sequence similarity ranking reliably predicts phage–host relationships

description: Additional file 2: Table S1. Distribution of Phirbo, BLAST and WIsH scores among interacting and non-interacting virus-prokaryote pairs obtained from Edwards et al. and Galiez et al. data sets. Score ranges were summarized separately for 16,757 interacting and non-interacting virus-host pairs from Edwards et al., and 26,024 interacting and non-interacting virus-host pairs from Galiez et al. Table S2. Number of virus-host pairs evaluated by Phirbo, BLAST, and WIsH in Edwards et al. and Galiez et al. data sets. Table S3. Phages assigned by BLAST to multiple, equally-scored host species. Phirbo differentiated between host species and provided the highest score to primary host species. Table S4. Host prediction accuracy of Phirbo, BLAST, and WIsH over virus contig length. Table S5. Phage sequence coverage of 485 phages correctly assigned by BLAST and Phirbo to their host species. Sequence coverage was calculated for each phage as the sum of the lengths of its non-overlapping high scoring pairs to the genome of the correct host species, divided by the size of the query phage genome. Prophages were assumed to have sequence coverage greater than or equal to 30%. Table S6. Summary of taxonomic affiliations of 236 phages that had sequence coverage &lt; 30% with the host species genomes. Table S7. Protein families present in sequence regions of 236 phage genomes that were used by BLAST and/or Phirbo in host prediction. The table provides information on each protein family (prokaryotic Virus Orthologous Group (pVOG)) used by BLAST and Phirbo, including: (i) pVOG description and functional assignment (manually curated), (ii) pVOG count (number of times a given pVOG was present in the phage genome, as well as in sequences used by BLAST or Phirbo), (iii) pVOG percentage (pVOG count divided by pVOG count in the genome), and (iii) P-value of pVOG enrichment. Table S8. RNA families present in sequence regions of 236 phage genomes that were used by BLAST and Phirbo in host prediction. The table provides information on each Rfam family used by BLAST and Phirbo. Table S9. Comparison of Phirbo’s host prediction performance between BLAST-based and Mash-based rankings of prokaryotic species.
DOI: 10.6084/m9.figshare.16778433.v1
title: Additional file 6 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 6: Table S6. qRT-PCR primer information.
DOI: 10.6084/m9.figshare.16778430.v1
title: Additional file 5 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 5: Table S5. Differentially expressed genes (DEGs) related hormone metabolism and biosynthesis.
DOI: 10.6084/m9.figshare.16778427.v1
title: Additional file 4 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 4: Table S4. Differentially expressed protein kinases (PKs) of M. denudata buds in response to cold acclimation.
DOI: 10.6084/m9.figshare.16778424.v1
title: Additional file 3 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 3: Table S3. Differentially expressed transcription factors (TFs) of M. denudata buds in response to cold acclimation.
DOI: 10.6084/m9.figshare.16778421.v1
title: Additional file 2 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 2: Table S2. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of differentially expressed genes (DEGs) for M. denudata buds in response to cold acclimation.
DOI: 10.6084/m9.figshare.16778418.v1
title: Additional file 1 of Physiological and transcriptome analysis of Magnolia denudata leaf buds during long-term cold acclimation

description: Additional file 1: Table S1. Gene Ontology (GO) analysis of the differentially expressed genes (DEGs) for M. denudata buds in response to cold acclimation.
DOI: 10.6084/m9.figshare.16778417.v1
title: Additional file 4 of Impact of human gene annotations on RNA-seq differential expression analysis

description: Additional file 4 All metrics (Microsoft Excel).
DOI: 10.6084/m9.figshare.16778411.v1
title: Additional file 2 of Impact of human gene annotations on RNA-seq differential expression analysis

description: Additional file 2 Comparison of characteristic features across the count dataset (HTML).
DOI: 10.6084/m9.figshare.16778406.v1
title: Additional file 3 of Compositional variation of the human fecal microbiome in relation to azo-reducing activity: a pilot study

description: Additional file 3. An Excel file with multiple sheets, representing relative abundance ofdifferent taxa (phyla, classes, order, family, genera).
DOI: 10.6084/m9.figshare.16778403.v1
title: Additional file 2 of Compositional variation of the human fecal microbiome in relation to azo-reducing activity: a pilot study

description: Additional file 2. QIIME output in Biological Observation Matrix (biom) data format for allsamples.
DOI: 10.6084/m9.figshare.16778397.v1
title: Additional file 2 of Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors

description: Additional file 2. Recurrent aberrant regions and associated genes.
DOI: 10.6084/m9.figshare.16778393.v1
title: Additional file 1 of Transcriptomic analysis of the seminal vesicle response to the reproductive toxicant acrylamide

description: Additional file 1: Tables A1-A9. This additional file contains all supplemental tables for this manuscript.
DOI: 10.6084/m9.figshare.16778384.v1
title: Additional file 1 of Electroretinography and contrast sensitivity, complementary translational biomarkers of sensory deficits in the visual system of individuals with fragile X syndrome

description: Additional file 1.
DOI: 10.6084/m9.figshare.16778382.v1
title: Additional file 1 of Novel chemotherapeutic agent FX-9 activates NF-κB signaling and induces G1 phase arrest by activating CDKN1A in a human prostate cancer cell line

description: Additional file 1.
DOI: 10.6084/m9.figshare.16778360.v1
title: Additional file 1 of Hsa-mir-548 family expression in human reproductive tissues

description: Additional file 1: Supplementary Table S1. Human hsa-mir-548 family pre-miRNA sequence locations in human genome. Supplementary Table S2. Hsa-mir-548 family miRNAs expressed in reproductive tissues. Supplementary Table S3. Reactome pathways of predicted miRNA targets