cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p13l9fvh
title: Local and Global Geodatabases Used in South Carolina StreamStats 2024

description: In cooperation with the South Carolina Department of Transportation, the U.S. Geological Survey (USGS) updated the foundational geospatial layers for the South Carolina StreamStats web application (https://www.usgs.gov/streamstats), which provides analytical tools useful for water-resources planning and management (Kolb and others, 2018). This dataset comprises the 45 local geodatabases of the 8-digit Hydrologic Unit Code (HUC-8) watersheds in the South Carolina StreamStats (henceforth referred to as SC StreamStats) study area along with the global geodatabase that ties the local HUC-8s together. This dataset supersedes the previous SC StreamStats version 1 data published in Kolb and others (2018), reflecting updated lidar-derived elevation data for much of the state, along with new streamlines for Charleston and Georgetown counties.

Reference:

Kolb, K.R., Heal, E.N., and Clark, J.M., 2018, Lidar-derived Data Layers for South Carolina StreamStats, 2007-2013: U.S. Geological Survey data release, https://doi.org/10.5066/P9Q8RSF5.
DOI: 10.6084/m9.figshare.c.3631607_d1.v1
title: Additional file 1: of First case report of inherited Rubinstein-Taybi syndrome associated with a novel EP300 variant

description: Phenotype table. Phenotype found in patient and her mother. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3631634_d2.v1
title: Additional file 2: of Diabetes mellitus is associated with increased mortality during tuberculosis treatment: a prospective cohort study among tuberculosis patients in South-Eastern Amahra Region, Ethiopia

description: Dataset used for the manuscript. (XLS 3953Â kb)
DOI: 10.5281/zenodo.14510431
title: LSM example J. Dubrulle
DOI: 10.5281/zenodo.14510432
title: LSM example J. Dubrulle
DOI: 10.6084/m9.figshare.c.3631859_d3.v1
title: Additional file 2: Workflow S1. of A novel RNAseqâ  assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease

description: Description of bioinformatic data analysis of transcriptomic RNAseq data for MHC class I genotyping. Bioinformatic skripts including codes and options for preprocessing and data analysis of fastq files from RNAseq transcriptome analysis for MHC class I allele identification and genotyping. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3631847_d3.v1
title: Additional file 13: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major functional domains of differentially expressed proteins in ‘Veyo’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3631871_d2.v1
title: MOESM2 of Spatial profiles of markers of glycolysis, mitochondria, and proton pumps in a rat glioma suggest coordinated programming for proliferation

description: Additional file 2: Numerical tabulation of profiles of V-ATPase and GAPDH after normalization and alignment
DOI: 10.6084/m9.figshare.c.3631823_d10.v1
title: Additional file 15: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The potential function of lincRNAs as miRNA decoys. (XLS 1841Â kb)
DOI: 10.6084/m9.figshare.c.3631847_d4.v1
title: Additional file 5: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Differentially expressed transcripts in ‘Falster’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation. (XLSX 375 kb)
DOI: 10.6084/m9.figshare.c.3631823_d11.v1
title: Additional file 19: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The expression of drought-stressed lincRNAs as miRNA targets or decoys. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3631871_d3.v1
title: MOESM1 of Spatial profiles of markers of glycolysis, mitochondria, and proton pumps in a rat glioma suggest coordinated programming for proliferation

description: Additional file 1: Numerical tabulation of profiles of Tom20 and GAPDH after normalization and alignment
DOI: 10.6084/m9.figshare.c.3631847_d5.v1
title: Additional file 12: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major cellular compartments of differentially expressed transcripts in ‘Falster’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 12 kb)
DOI: 10.5281/zenodo.14214698
title: Inferring methane emissions from African livestock by fusing drone, tower, and satellite data

description: This data set includes:




DEM_Kapiti.zip
Digital Elevation Map of Kapiti Research Station, Kenya


FlightReader.zip
Drone flight logs processed by FlighReader (flightreader.com)


flight_notes.xlsx
Field notes of drone flights


Strato.zip
Methane sensor data


ECtower_Kapiti.zip
Eddy-covariance tower data


06_df_withZ.csv
Data file including surface elevation (from DEM) at drone location


source_polygons.zip
Shapefiles of the outline of the herds inside in the boma




 

The data processing scripts are available at: https://github.com/AlouetteUiO/MIK.

The manuscript of this study will be submitted to Biogeosciences (EGU journal).
DOI: 10.6084/m9.figshare.c.3631883_d1.v1
title: MOESM1 of Is it time to rebalance the case mix? A portfolio analysis of direct catheterization laboratory costs over a 5-year period

description: Additional file 1. Excel sheet of the original data base.
DOI: 10.6084/m9.figshare.c.3631877_d4.v1
title: Additional file 8: Table S3. of Detection of Novel QTLs Regulating Grain Size in Extra-Large Grain Rice (Oryza sativa L.) Lines

description: Primer sequences used in marker analysis. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.28049414
title: Shingles Vaccine Survey

description: National survey (NORC) and survey at health care center (michmed) about Shingles vaccination and how concerns about tolerability impact it.
DOI: 10.6084/m9.figshare.c.3631952_d5.v1
title: Additional file 12: Table S6. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: Genes and positions of Hsf1 binding sites. Gene name and sequence information are indicated for each gene from clusters 1 and 4 (from fuzzy mean clustering) with a detected Hsf1 binding site. Scores are obtained with the Opposum v.3.0 algorithm. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3631952_d6.v1
title: Additional file 6: Table S5. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: GO term enrichment analysis of genes in each cluster obtained from fuzzy mean clustering. Cluster numbers are indicated as well as the enriched pathways, FDR and gene name. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3631988_d1.v1
title: Additional file 4 of Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

description: Table S3. CCTN node degrees. (TXT 1177 kb)
DOI: 10.6084/m9.figshare.c.3631952_d7.v1
title: Additional file 5: Table S4. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: Complete list of the 1825 genes regulated in at least one condition (FDR ≤ 0.05). Normalized count, fold change and adjusted p values were obtained using the DESeq algorithm. Cluster numbers from fuzzy mean clustering (last column) were assigned for membership &gt; 0.5. (XLSX 225 kb)
DOI: 10.6084/m9.figshare.c.3631952_d10.v1
title: Additional file 3: Table S2. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: The 1411 genes regulated in the unc45b mutant compared with wild-type embryos at 72 hpf with FDR  1.5. (XLSX 120 kb)
DOI: 10.6084/m9.figshare.c.3631952_d11.v1
title: Additional file 13: Table S7. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: Full list of Hsf1 binding sites detected in the promoter of genes up-regulated concomitantly in unc45b −/− and hsp90a −/− compared with wild type at 72 hpf. Gene name and sequence information are indicated for each gene with a detected Hsf1 binding site. Scores are obtained with the Opposum v.3.0 algorithm. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3631988_d3.v1
title: Additional file 5 of Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

description: Table S4. Patient samples used. (XLS 278 kb)
DOI: 10.6084/m9.figshare.c.3631988_d4.v1
title: Additional file 10 of Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

description: Table S9. Fragile sites used. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3631952_d12.v1
title: Additional file 4: Table S3. of Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

description: GO term enrichment analysis of genes up- or down-regulated in unc45b mutants compared with wild type at 72 hpf. Cluster groups (1 and 2) were obtained from the hierarchical clustering of the 1411 genes regulated at 72 hpf (Additional file 3). (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3631988_d5.v1
title: Additional file 2 of Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

description: Table S1. Cancer cell lines used. (TXT 62 kb)
DOI: 10.6084/m9.figshare.c.3632054_d3.v1
title: Additional file 1: Table S1. of Clinical and subclinical endometritis induced alterations in bovine endometrial transcriptome and miRNome profile

description: The list of differentially expressed genes between CE and HE animals along with their fold change, p values and FDR. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3632054_d4.v1
title: Additional file 2: Table S2. of Clinical and subclinical endometritis induced alterations in bovine endometrial transcriptome and miRNome profile

description: The list of differentially expressed genes between SE and HE animals along with their fold change, p values and FDR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3632072_d1.v1
title: Additional file 1: of Persistence in diving American mink

description: Details of deployment, dives, clusters and aquatic activity sessions for each mink. F = female, M = male; cluster and AAS length is expressed as the number of dives.
DOI: 10.6084/m9.figshare.c.3632087_d2.v1
title: Additional file 2 of Detecting signals of seasonal influenza severity through age dynamics

description: Historical CDC documentation of past influenza seasons. Table of qualitatively-assigned severity categories and surveillance system text descriptions drawn from Centers for Disease Control and Prevention (CDC) influenza season summaries and Morbidity and Mortality Weekly Reports (MMWR) for the 1997â  98 through 2013â  14 flu seasons. Severity categories were assigned according to the algorithm described in Additional file 1: Supporting material section S3.1. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3632186_d5.v1
title: Additional file 1: of Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes

description: Differentially expressed genes during apple development and ripening. Expression data for differentially expressed genes between 60DAF and 2 M, displaying similar expression patterns for the eight genotypes (H074, H097, I016, I062, I095, V034, V083, W029) in both plots (PH and P12). Genes relatively more expressed during early fruit development (60 and 110 DAF) or during fruit maturation and cold storage (H, 1 M and 2 M) were respectively grouped in cluster A and B. Five time points are 60 days after flowering (60 DAF), 110 days after flowering (110 DAF), harvest (H), 1 month and 2 months of cold storage (1 M and 2 M). (XLSX 4945 kb)
DOI: 10.6084/m9.figshare.c.3632186_d6.v1
title: Additional file 2: of Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes

description: Validation of microarrays results by RT-qPCR. S2-A) List of primers used for RT-qPCR. S2-B) Validation of microarrays results by quantitative real-time PCR (qRT-PCR) between 60 days after flowering (60 DAF) and 2 months of cold storage (2 M) for 4 genotypes grown on plot PH or P12. The three last genes are the reference genes used to calculate a normalization factor. Ratios were calculated on the normalized data from microarray analysis (log2 ratio) and as normalized expression for qRT-PCR (Ct ratio). Correlations between qRT-PCR Ct ratios and microarray log2 ratios are shown, along with Pearson correlation coefficient. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3632186_d7.v1
title: Additional file 7: of Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes

description: Matrix of identity for Î˛-galactosidase glycosyl hydrolase 35 domain and expansin DPBB and Pollen allergen domains. S7-A: matrix of identity for Î˛-galactosidase glycosyl hydrolase 35 domains. S7-B: matrix of identity for expansin DPBB (double-psi beta-barrel) and Pollen allergen domains. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3632225_d1.v1
title: Additional file 1: Table S1. of Left ventricular diastolic dysfunction in pulmonary hypertension predicts functional capacity and clinical worsening: a tissue phase mapping study

description: Correlates of conventional and novel CMR metrics with 6-MWD in PH. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3632225_d2.v1
title: Additional file 2: Table S2. of Left ventricular diastolic dysfunction in pulmonary hypertension predicts functional capacity and clinical worsening: a tissue phase mapping study

description: Univariate Cox regression analysis of conventional and novel CMR metrics to predict disease progression in PH. (XLSX 44 kb)
DOI: 10.5519/qd.zuj2tttz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (217 records)
DOI: 10.6084/m9.figshare.c.3632300_d6.v1
title: MOESM1 of Conserved genes and pathways in primary human fibroblast strains undergoing replicative and radiation induced senescence

description: Additional file 9. Regulation and function of genes associated with repair pathways during irradiation induced senescence. Differential regulation and function of (i) genes associated with DNA repair (Nucleotide excision, Base excision, Mismatch repair) and (ii) DNA replication pathways on 20 Gy irradiation induced senescence in MRC-5 fibroblasts and HFF strains. Blue color denotes that previous studies have functionally associated these genes with induction of senescence.
DOI: 10.6084/m9.figshare.c.3632324_d1.v1
title: Additional file 2: of Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick

description: Information for each of the 15 samples. Number of embryos dissected, number of ganglia included, proportion and number of cells sorted, quantity and integrity (RIN number) of RNA extracted, sequencing depth and proportion of reads mapped and number of genes expressed are indicated for each replicate. Genes are counted as expressed if RPKMâ  &gt;â  0.3. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632303_d7.v1
title: Additional file 3: Table S2. of Validation of a high resolution NGS method for detecting spinal muscular atrophy carriers among phase 3 participants in the 1000 Genomes Project

description: Theoretical results. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3632333_d1.v1
title: Additional file 3: of Phase-specific and lifetime costs of cancer care in Ontario, Canada

description: Match at diagnosis. (XLSX 91Â kb)
DOI: 10.6084/m9.figshare.c.3632333_d2.v1
title: Additional file 2: of Phase-specific and lifetime costs of cancer care in Ontario, Canada

description: Match at death. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.c.3632303_d9.v1
title: Additional file 2: Table S1. of Validation of a high resolution NGS method for detecting spinal muscular atrophy carriers among phase 3 participants in the 1000 Genomes Project

description: MLPA probes details. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3632324_d4.v1
title: Additional file 3: of Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick

description: Normalized expression levels. Number of mapped reads per kilobase of exon per million reads (RPKM) is given for each gene and for each of the 15 replicates. (XLSX 3748 kb)
DOI: 10.6084/m9.figshare.c.3632327_d24.v1
title: Additional file 19: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Properties of predicted Fom -5190a genes/proteins. (XLSX 5099 kb)
DOI: 10.6084/m9.figshare.c.3632411_d1.v1
title: Additional file 1: of Species composition of sand flies and bionomics of Phlebotomus papatasi and P. sergenti (Diptera: Psychodidae) in cutaneous leishmaniasis endemic foci, Morocco

description: Detailed data set for sand fly species sampled in 48 sites across Morocco from April to June 2013. The specimens were sorted as male or female for each species. The coordinates (longitude and latitude) for each site is also presented in this data set. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.27853665
title: Supplementary materials - Molecular Analysis of <i>Escherichia coli</i>

description: Description of Samples Used for Molecular and Epidemiological Study
DOI: 10.6084/m9.figshare.27853665.v3
title: Supplementary materials - Molecular Analysis of <i>Escherichia coli</i>

description: Description of Samples Used for Molecular and Epidemiological Study
DOI: 10.6084/m9.figshare.c.3632477_d12.v1
title: Additional file 2: Table S3. of Identification of therapeutic targets applicable to clinical strategies in ovarian cancer

description: Candidate shRNAs identified in Ovcar5. (XLS 426Â kb)
DOI: 10.6084/m9.figshare.c.3632519_d6.v1
title: Additional file 7: Table S6. of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: List of downregulated genes in the dxr mutant and their MapMan classification. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3632498_d8.v1
title: Additional file 10: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: SNP loci located in soybean LRR-RLK genes identified by analysis of the resequencing data of 25 wild soybeans and 31 cultivated soybeans. (XLSX 2377 kb)
DOI: 10.6084/m9.figshare.c.3632498_d9.v1
title: Additional file 1: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: List of identified LRR-RLK genes in soybean. The ID, gene code, gene length, physical position on chromosome, number of exon/intron/UTR, length of amino-acid/signal peptide, number and position of TM, position of kinase domain for each soybean LRR-RLK gene annotated in this study were included. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3632519_d7.v1
title: Additional file 1: Table S1.  of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: Summary of rice FST genes and number of related gene-indexed mutants collected from IRFGC and our Ds insertional mutants. (XLSX 1494Â kb)
DOI: 10.6084/m9.figshare.c.3632498_d10.v1
title: Additional file 4: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: Putative motifs of all GmLRR-RLKs in each subgroup predicted by MEME. Motifs were identified by MEME software using the deduced amino-acid sequences of GmLRR-RLKs in each group and the relative position of each identified motif was shown. (XLSX 3460 kb)
DOI: 10.6084/m9.figshare.c.3632519_d8.v1
title: Additional file 4: Table S3. of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: Functional classification of 1022 characterized genes using MapMan analysis. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3632540_d1.v1
title: Additional file 1: Table S1. of Sex-specific variation in signaling pathways and gene expression patterns in human leukocytes in response to endotoxin and exercise

description: The list of differentially regulated genes between sexes in response to exercise (t Ă  t interaction) in both stimulated and un-stimulated whole blood cultures. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.c.3632651_d2.v1
title: Additional file 4: Table S4. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: P-values of Bonferroni post-hoc tests. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3632642_d3.v1
title: Additional file 7: Table S7. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Carbohydrate Esterase (CE) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632651_d3.v1
title: Additional file 2: Table S2. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Metazoan parasite abundance, prevalence and species richness in Barbus spp. populations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632642_d4.v1
title: Additional file 6: Table S6. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Polysaccharide Lyase (PL) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632651_d4.v1
title: Additional file 3: Table S3. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Results of ANCOVA tests. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3632642_d5.v1
title: Additional file 5: Table S5. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Glycoside Hydrolase (GH) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3632651_d5.v1
title: Additional file 1: Table S1. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Site names and their geographical coordinates. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632642_d6.v1
title: Additional file 4: Table S4. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes following the MEROPS databases (peptidases) identified in O. polyrhachis-furcata, compared with the nineteen other fungi included in this study. (XLSX 50 kb)