cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.05sg7/2
title: computational model of moth motion vision system

description: This zip archive contains MATLAB and SIMULINK scripts implementing the computational model of the hawkmoth motion vision system used in the paper with which this archive is associated. The model can be run by running the script setup_reichardt_array_hyles_grating_osc.m. This script and the various functions that it calls are all internally documented according to the usual MATLAB conventions.
DOI: 10.5061/dryad.2b8s8/1
title: propofol vs sevoflurane
DOI: 10.5061/dryad.353q5/1
title: Marsupial family phylogneomics analyses results

description: Analyses results for each data set, including phylogenetic and dating analyses. For access to target sequences and code used to process the sequencing reads, please see the Bioinformatics directory at https://github.com/duchene/marsupial_family_phylogenomics (linked below).
DOI: 10.5061/dryad.40b70/1
title: run_traits_TEMPLATE

description: RevBayes script for inferring tree from continuous characters.
DOI: 10.5061/dryad.40b70/2
title: run_traits_combined_analysis_TEMPLATE

description: RevBayes script for inferring trees simultaneously from continuous and discrete characters
DOI: 10.5061/dryad.40b70/3
title: Discrete character matrix

description: Example simulated discrete character matrix.
DOI: 10.5061/dryad.538jd/2
title: Chimp cortisol dataset

description: Cortisol samples and CHI values for each subject
DOI: 10.5061/dryad.5f5g8/1
title: Meliniomyces_EA_Melanin_Decomposition

description: Elemental analyses, melanin concentration and decomposition data  for melanized and non-melanized Meliniomyces bicolor necromass.
DOI: 10.5061/dryad.5ps8j/1
title: Estimated yellow fever vaccination coverage for at-risk districts from 1970 to 2016

description: Estimated yellow fever vaccination coverage for the beginning of each decade from 1970 to 2016, and the number of individuals still requiring vaccination in 2016, for each district classified as endemic or low risk for yellow fever. Vaccination coverage was calculated using three alternative vaccination-targeting scenarios: targeted; untargeted, unbiased; and untargeted, biased. Full details are provided in the manuscript.
DOI: 10.5061/dryad.6737v/1
title: SI-master

description: Supporting Information, here are the graphs for the fluctuation functions.

The graphs are labeled as following:

Palestrina Motets: PalestrinaMo-#
Bach Musical Offering: BachMO-#
Bach Well Tempered Clavier: BachWTK-#
Haydn String Quartets: HaydnSQ-#
Mozart Piano Sonatas: MozartPS-#
Mozart String Quartets: MozartSQ-#
Beethoven Fugues: BeethovenF-#
Beethoven Early Quartets: BeethovenEQ-#
Beethoven Late Quartets: BeethovenLQ-#
Dvorak Humoresques: DvorakH-#
Dvorak Silhouettes: DvorakS-#
Dvorak Serenade for Strings: DvorakSt-#
Shostakovich Preludes and Fugues: ShostakovichPF-#
The number corresponds to the place in the full list of opus.

Files corresponding to a scaling behavior over all s boxes (profile 1) are in Scaling.pdf, files corresponding to the functions showing a crossover (profiles 1 and 2) are in Crossovers.pdf, the files with the graps of profiles 4 and 5 are in NoScaling.pdf

The values of the alpha's and R squared for the linear fitting in the fluctuations function are on the Tables: TableScaling.pdf corresponds to the functions following a power law and TableCrossovers.pdf to the functions with a crossover.
DOI: 10.5061/dryad.6737v/2
title: SM-TimeSeries

description: All time series analyzed and the four tracks of the Survey. The time series were constructed as described in the Supplementary Material, from MIDIs downloaded from the web databases mentioned in references.
DOI: 10.5061/dryad.6737v/3
title: InfoSeries.jl-master

description: Repository for every calculation of the DFA and the construction of the time series from the .csv file. The repository can also be consulted in GitHub: https://github.com/spiralizing/InfoSeries.jl
DOI: 10.5061/dryad.6737v/4
title: Supplementary Material

description: Full list of opus analyzed, details for the construction of the time series, individual DFA functions and their relation with the power spectra. Description of the survey.
DOI: 10.5061/dryad.6ch89/3
title: Dryad_Passive_shear_modulus

description: This file contains passive shear modulus values measured at 30°, 0° and -25° of plantarflexion.
DOI: 10.5061/dryad.6ch89/4
title: Dryad_NeuralDrive

description: This file contains data of EMG RMS values for the trial 1 and trial 2 measured during the isometric plantarflexion tasks performed at 20% of MVC and 20 N.m and normalized to that measured during maximal isometric for plantarflexion.
Note that data for trial 1 and 2 are averaged within the manuscript.
DOI: 10.5061/dryad.6ch89/5
title: Dryad_Shear_modulus_Submaximal_tasks

description: This file contains the shear modulus values measured during the isometric plantarflexion tasks performed at 20% of MVC and 20 N.m.
DOI: 10.5061/dryad.6k6f6/1
title: Probability to choose a particular area

description: Data for testing probability to choose a particular area
DOI: 10.5061/dryad.6k6f6/2
title: Utilization of a chosen area

description: Data to test utilization of a chosen area
DOI: 10.5061/dryad.6k6f6/3
title: Percent overlap home ranges and core areas

description: Data to compare the percent of area overlap of the annual home ranges with the percent of area overlap of the annual core areas.
DOI: 10.5061/dryad.6k6f6/4
title: Food availability of core areas and the rest of the ranges.

description: Data to compare herbaceous food availability of core areas with the rest of the ranges.
DOI: 10.5061/dryad.6k6f6/5
title: Script to test probability to choose a particular area

description: R code to test the probability to choose a particular area
DOI: 10.5061/dryad.6k6f6/6
title: Script to test utilization of a chosen area

description: R code to test utilization of a chosen area
DOI: 10.5061/dryad.6k6f6/7
title: Script for Wilcoxon signed-ranks test

description: R code to to compare the percent of area overlap of the annual home ranges with the percent of area overlap of the annual core areas and to compare herbaceous food availability of core areas with the the rest of the home ranges.
DOI: 10.5061/dryad.6pt0m/1
title: NY Data

description: These are the data collected from the New York site.
DOI: 10.5061/dryad.6pt0m/2
title: MA Data

description: These are the data collected form the Massachusetts site.
DOI: 10.5061/dryad.6pt0m/3
title: NY Analysis

description: This is the R script for the analysis of data from the New York sites.
DOI: 10.5061/dryad.6pt0m/4
title: MA Analysis

description: This is the R script for the analysis of data from the Massachusetts site.
DOI: 10.5061/dryad.7417k/1
title: COI sequences of Diaphorina citri used in this study

description: COI sequences of 356 individuals of Diaphorina citri used in this study
DOI: 10.5061/dryad.7417k/2
title: COI sequences of 48 samples representing all our sampling sites from China

description: COI sequences of 48 samples representing all our sampling sites from China
DOI: 10.5061/dryad.748rk/1
title: Latitudinal variation in timing of dawn singing under natural and artificial light conditions

description: Region = country of recording (Spain, Germany, Finland)
Location = name of the site (see Table S2)
Longitude = longitude of each location in ºE
Latitude = latitude of each location in ºN
Treatment = type of location (lighted or control)
Mean intensity at 0m = mean intensity at each location in lux, measured under the street lights, with the lux meter held 2m from the ground
Mean intensity at 5m = mean intensity at each location in lux, measured 2 meters from the street lights, with the lux meter held 2m from the ground
Mean intensity at 10m = mean intensity at each location in lux, measured 10 meters from the street lights, with the lux meter held 2m from the ground
Date = date of recording (DDMM)
Calendar date = date starting from 1 = 1 January
Lay date = date standardized according to the great tit mean lay date of each region
Sunrise = time of sunrise at each location on each day in HH:MM
Extraction = name of the person who extracted the recording data (David =David Diez-Méndez / Satu = Satu Tolvanen)
Temperature = temperature at sunrise at each location on each day in degrees Celsius
Rain = presence of rain during the recording (yes/no)
Robin onset = European robin start of dawn singing at each location on each day in minutes before sunrise
Blackbird onset = Common blackbird start of dawn singing at each location on each day in minutes before sunrise
Great tit onset = Great tit start of dawn singing at each location on each day in minutes before sunrise
Blue tit onset = Blue tit start of dawn singing at each location on each day in minutes before sunrise
Chaffinch onset = Common chaffinch robin start of dawn singing at each location on each day in minutes before sunrise
DOI: 10.5061/dryad.c0g0b/1
title: Cort and survival_Jimeno et al. Func.Ecol.

description: sd is the abbreviation for the standardized variables as they were used in the statistical analyses. M: male; F: female
DOI: 10.5061/dryad.dc770/2
title: TULV_S

description: Partial Tula virus S-segment sequence alignment. Sequence names contain GenBank accession number, individual sample name, year of sample collection, latitude and longitude coordinates in this order. Coordinates of eponymous settlements were used when not stated in the original articles.
DOI: 10.5061/dryad.fp112/1
title: Armillaria ostoyae individuals genotyped using polymorphic markers

description: The data set included 206 Armillaria ostoyae individuals collected in the Landes de Gascogne forest (south-western France) between 2012 and 2014. Each individual was genotyped at 29 markers: 7 microsatellites and 22 single nucleotide polymorphism (SNP) markers.
DOI: 10.5061/dryad.g0295/1
title: Background grouse census and climate data

description: Grouse census and climate data during 1979-2016 at the Varaldskogen study area, southeast Norway, including list of variables.
DOI: 10.5061/dryad.gc67t/1
title: Body size and temperature at depth measurements for Southern Ocean myctophid fish
DOI: 10.5061/dryad.j1sb5/1
title: Tasmanian devil collated capture histories

description: Each sheet in the file contains the capture histories
for individual devils for a specified site (totalling nine sheets and nine sites).
DOI: 10.5061/dryad.j1sb5/2
title: Bronte collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.j1sb5/3
title: Buckland collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.j1sb5/4
title: Fentonbury collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.j1sb5/5
title: Granville collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.j1sb5/7
title: Narawntapu collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.j1sb5/8
title: Takone collated trap files for Tasmanian devils

description: Each sheet within the file contains the trap locations for
the specified month of survey for respective sites.
DOI: 10.5061/dryad.jv42j/13
title: M2_session_6
DOI: 10.5061/dryad.jv42j/14
title: coupled_oscillators_elife

description: Matlab code to simulate coupled phase oscillators. With this code the effects of detuning and coupling are illustrated.
DOI: 10.5061/dryad.jv42j/15
title: coupled_PING_elife

description: Matlab simulation code  of two coupled pyramidal-interneuron gamma networks (PING). It is based on the izhikevich-type  neuronal model. With this code the effect of detuning (shifting preferred frequency by increasing input current) and coupling on their phase dynamics are illustrated.
DOI: 10.5061/dryad.jv42j/16
title: Please_read_this
DOI: 10.5061/dryad.m233m/1
title: Trillium_erectum_Pollen_Limitation_2016

description: Reproductive success and leaf size of Trillium erectum for control and pollen supplemented individuals along an elevation gradient at Mont-Mégantic National Park.
DOI: 10.5061/dryad.m233m/2
title: Erythronium_americanum_Pollen_Limiation_2016

description: Reproductive success and leaf size of Erythronium americanum for control and pollen supplemented individuals along an elevation gradient at Mont-Mégantic National Park.
DOI: 10.5061/dryad.m233m/3
title: Trillium_erectum_herbivory_2016

description: Proportion of browsed Trillium erectum individuals along an elevation gradient at Mont-Mégantic National Park.
DOI: 10.5061/dryad.m233m/4
title: Erythronium_americanum_herbivory_2016

description: Proportion of browsed Erythronium americanum individuals along an elevation gradient at Mont-Mégantic National Park.
DOI: 10.5061/dryad.m233m/5
title: Number_of_seeds_T.erectum_E.americanum_2015_2016

description: Reproductive success of Trillium erectum and Erythronium americanum along an elevation gradient at Mont-Mégantic National Park.
DOI: 10.5061/dryad.pn5kg/1
title: 1000 Salamander Chronograms

description: Posterior distribution of 1000 (post burnin) Bayesian chronograms including 516 salamander taxa. Analysis was performed in BEAST and based on 7401 character states derived from seven protein-coding genes: three mitochondrial (Co1, Cytb, ND2) and four nuclear (BDNF, Pomc, RAG1, Slc8a3). See paper and Supplemental Appendix 1 for details.
DOI: 10.5061/dryad.pt7r4/1
title: Fraser2017Data

description: Zipped folder containing all outputs from simulation analyses. See 'Readme' file for explanation of model parameter settings.
DOI: 10.5061/dryad.rn6k1/1
title: Salmon_etal_DataMatrix

description: Raw data used for all the models in the publication
DOI: 10.5061/dryad.s8g04/4
title: Measurements and metabolism in growing foals

description: Measurements (body weight (kg), WH=wither's height (cm), TP=thoracic perimeter (cm), BCS=Body Condition Score), plasma concentrations of metabolic factors (leptin (ng/mL), adiponectin (ng/mL), SAA=Serum Amyloid A (ng/mL), T3=Triiodothyronin (ng/mL), T4=thyroxin (ng/mL)) and serum concentrations of cortisol (ng/mL) in growing foals between birth and 690 days of age.
DOI: 10.5061/dryad.s8g04/6
title: Testicular function in foals at 12 months of age

description: Expression (arbitrary unit) of genes markers of testicular maturity (Cyp19, Cx43=Connexin 43, AR, STAR), testicular immaturity (AMH) and genes involved in the etablishment of the blood-testis barrier (Occludin, N Cadherin).
DOI: 10.5061/dryad.t6hh8/1
title: Abundance table for bathypelagic prokaryotes from Malaspina 2010 Expedition

description: Abundance table containing the number of reads for the Operational Taxonomic Units (OTUs) of particle-attached (PA) and free-living (FL) prokaryotes detected in 30 globally distributed stations from the Malaspina 2010 Expedition. Corresponds to 16SrDNA amplicons Illumina-based sequencing. Table is rarefied to 10,617 reads/sample. Columns are the samples; Rows are the OTUs. Taxonomy is attached after the last sample.
DOI: 10.5061/dryad.t6hh8/2
title: Auxiliary data for the samples

description: Auxiliary data containing information on the station, size-fraction, date of sampling, ocean, depth and coordinates.
DOI: 10.5061/dryad.v4d24/3
title: Appendix 3
DOI: 10.5061/dryad.v70ck/1
title: Data S1 The body weight of mice in ND, HFD and HFD+Cur group.
DOI: 10.5061/dryad.v70ck/2
title: Data S2 The fat mass of body weight in each group at week 4 and week 8
DOI: 10.5061/dryad.v70ck/3
title: Data S3 The fasting blood glucose of mice in ND, HFD and HFD+Cur group
DOI: 10.5061/dryad.v70ck/4
title: Data S4 The results of OGTT at week 4 and week 8
DOI: 10.5061/dryad.v70ck/5
title: Data S5 The serum lipid profiles and FFA level of mice in ND, HFD and HFD+Cur group
DOI: 10.5061/dryad.v70ck/6
title: Fig.1 Chemical structure of curcumin.

description: Its molecular formula is C21H20O6. MW (molecular weight): 368.37
DOI: 10.5061/dryad.v70ck/7
title: Fig.2 Curcumin decreased the body weight and fat mass in HFD induced obese mice.

description: (a) Body weight and (b) body weight gain of the mice in ND, HFD and HFD+Cur group, 10 samples per group were taken for each assay. The fat mass of body weight in each group at week 4 (c) and week 8 (d). Data are presented as meanSEM in each group. Significant difference: #p&lt;0.05, ##p&lt;0.01 vs. ND group, *p&lt;0.05, **p&lt;0.01 vs. HFD group.
DOI: 10.5061/dryad.vv469/76
title: HD-and-RNA-variants-Chr17.vcf

description: All HD and RNAseq variants on chromosome 17. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/77
title: HD-and-RNA-variants-Chr18.vcf

description: All HD and RNAseq variants on chromosome 18. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/78
title: HD-and-RNA-variants-Chr19.vcf

description: All HD and RNAseq variants on chromosome 19. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/79
title: HD-and-RNA-variants-Chr20.vcf

description: All HD and RNAseq variants on chromosome 20. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/80
title: HD-and-RNA-variants-Chr21.vcf

description: All HD and RNAseq variants on chromosome 21. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/81
title: HD-and-RNA-variants-Chr22.vcf

description: All HD and RNAseq variants on chromosome 22. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.vv469/82
title: HD-and-RNA-variants-Chr23.vcf

description: All HD and RNAseq variants on chromosome 23. Used in the paper for LC and LY GWAS.
DOI: 10.5061/dryad.1c5k9/1
title: R functions for integrating fossil uncertainty

description: R functions for integrating fossil uncertainty over time bins of various widths
DOI: 10.5061/dryad.1c5k9/2
title: Lagerstatten dataset used in analyses

description: Binned (10-My) Lagerstatten dataset used in all statistical analyses
DOI: 10.5061/dryad.1d8th/1
title: Sequencing information, gene order, and phylogenetic trees
DOI: 10.5061/dryad.1d8th/2
title: Specimen accession numbers
DOI: 10.5061/dryad.1d8th/3
title: Extra sequencing information
DOI: 10.5061/dryad.1d8th/4
title: Specimen information
DOI: 10.5061/dryad.2811b/1
title: Data submitted to Dryad
DOI: 10.5061/dryad.3c457/1
title: Larval density data

description: Data set life-history variables related to butterfly individuals that successfully reached the pupal stage. The description of each variable is provided as a comment in the Excel file.
DOI: 10.5061/dryad.3c457/2
title: Larval survival data

description: Individual data of butterfly larvae from the initiation of the experiment describing whether or not they survived until pupation. The description of each variable is provided as a comment in the Excel file.
DOI: 10.5061/dryad.3c457/3
title: Wasp brood data

description: A data set including life-history variables about the wasp broods originating from a subset of butterfly pupae that were successfully parasitized by a parasitoid wasp. The description of each variable is provided as a comment in the Excel file.
DOI: 10.5061/dryad.3ph7k/1
title: Chronogram (Maximum Clade Credibility Tree) of Restionaceae

description: Molecular Dating using BEAST of African Restionaceae
DOI: 10.5061/dryad.3ph7k/2
title: Habitat coding of African Restionaceae

description: 0: coastal wetlands; 1: montane wetlands; 2: coastal drylands; 3: montane drylands
DOI: 10.5061/dryad.3ph7k/3
title: Bayesian consensus tree from MrBayes

description: Consensus tree from the MrBayes analyses of African Restionaceae
DOI: 10.5061/dryad.3ph7k/4
title: 1000 posterior trees from the molecular dating analysis of African Restionaceae

description: The set of 1,000 trees from the posterior distribution of the BEAST analysis used for habitat reconstructions and models of evolution
DOI: 10.5061/dryad.40b70/4
title: Continuous character matrix

description: Example continuous character matrix.
DOI: 10.5061/dryad.4gc16/1
title: Inbreeding depression

description: This file contains the raw data (per individuals) used for the inbreeding depression and heterosis calculations. The file contains four pages: cross data, phenotypic data, longevity data and pollen/ovule data.
DOI: 10.5061/dryad.4gc16/2
title: Isolation_by_distance

description: This file contains the Fst values and distance (km) between each pair of Linaria cavanillesii populations.
DOI: 10.5061/dryad.53hv6/1
title: Table S1. Museum data for the white-bearded manakin specimens in green plumage collected along the Magdalena River Valley and the Eastern Llanos in Colombia.

description: Museum data for the white-bearded manakin specimens in green plumage collected along the Magdalena River Valley and the Eastern Llanos in Colombia. Hyphen indicates absence of geographic coordinates in the specimen label. The data correspond to specimens of the ornithological collections held in Instituto de Ciencias Naturales de la Universidad Nacional de Colombia (ICN) and Museo de Historia Natural de la Universidad de los Andes, Colombia (ANDES).
DOI: 10.5061/dryad.6k294/1
title: Photoperiod_Dyrad

description: Tracking data of 23 individual Arctic charr, from Lake Ellasjøen, Bear Island, Norway. Data is derived by biotelemetry from Sep 2009- Aug 2010.
DOI: 10.5061/dryad.7163d/1
title: 203individuals_2716SNPs

description: Contains the genotypes of the 203 Atlantic salmon individuals from Québec, Canada, analysed in this study at 2716 SNPs.
DOI: 10.5061/dryad.7417k/3
title: Locations and accession numbers of Diaphorina citri

description: Locations and accession numbers of Diaphorina citri in this study
DOI: 10.5061/dryad.8n3q3/1
title: Plant phylogenies

description: Network-level phylogenies for the plants in the 54 pollination networks analyzed.
DOI: 10.5061/dryad.8n3q3/2
title: Pollinator phylogenies

description: Network-level phylogenies for pollinators in the 54 interaction networks analyzed.
DOI: 10.5061/dryad.8n3q3/3
title: Pollination networks

description: 54 plant-pollinator networks analyzed in the study. These networks are versions of those available on the Web of Life database. They differ in that unidentified species have been removed and species' names have been updated.
DOI: 10.5061/dryad.8tp8n/1
title: Mmodesta_records_FWB

description: This file contains a comma-delimited dataset of M. modesta presence and absence records, as well as the physical, climatic, and biotic predictor layers used to model the geographic distribution of M. modesta. In addition, it includes information on the data source and the current land cover.
DOI: 10.5061/dryad.8tp8n/2
title: Mmodesta_records_FWB_variables

description: This comma-delimited file contains metadata regarding all the variables in "Mmodesta_records_FWB".
DOI: 10.5061/dryad.984h0/1
title: Complete data file - all analyses

description: Data for all analyses described in the manuscript. Each row represents one sampled individual.
DOI: 10.5061/dryad.gb645/1
title: Graphics and table data  PlosOne

description: The file contains the information of different variables for the analysis of the abiotic stress of Opuntia.
DOI: 10.5061/dryad.gj040/1
title: Leslie matrix strain AB1157

description: This csv file contains data of a age structured, Leslie matrix population projection model for E. coli strain AB1157. The data has been collected using a microfluidic device, called the mother machine. The discrete time steps in the Leslie matrix is one hour (note the initial data has been collected at 4 min time intervals). Age goes from birth (second column) to the last column of the matrix. Fertility rates (number of division per hour) are in the top row (first row after the header row). Survival rates are in the sub-diagonal. Final age with open age class.