cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1609683
title: High-density genetic linkage map of turbot (S. maximus) SNPs

description: Fig 1. High-density genetic linkage map of turbot (<em>S. maximus</em>) SNPs. Linkage group name and number are placed above each linkage group, for example, LG2 represents the second linkage group (LG). Numbers on the left are recombination fraction (RF) between the uppermost SNP mapped in an LG to any linked SNP marker in Kosambi’s distance in the same LG. For example, the left third number 2.796cM in LG3, represents the genetic distance between the uppermost SNP marker SM_670 and the third SNP marker SM_672. Linked SNP’ names are on the right, SM Scophthalmus maximus, and the number is the order of SNPs 1 to 6, 647.
DOI: 10.6084/m9.figshare.1609685
title: SNP_indel_CNV_Deletion_data_header_order plus NCBI-SRA

description: SNP_indel_CNV_Deletion_data_header_order plus NCBI-SRA
DOI: 10.6084/m9.figshare.1609683.v1
title: High-density genetic linkage map of turbot (S. maximus) SNPs

description: Fig 1. High-density genetic linkage map of turbot (<em>S. maximus</em>) SNPs. Linkage group name and number are placed above each linkage group, for example, LG2 represents the second linkage group (LG). Numbers on the left are recombination fraction (RF) between the uppermost SNP mapped in an LG to any linked SNP marker in Kosambi’s distance in the same LG. For example, the left third number 2.796cM in LG3, represents the genetic distance between the uppermost SNP marker SM_670 and the third SNP marker SM_672. Linked SNP’ names are on the right, SM Scophthalmus maximus, and the number is the order of SNPs 1 to 6, 647.
DOI: 10.6084/m9.figshare.1609685.v1
title: SNP_indel_CNV_Deletion_data_header_order plus NCBI-SRA

description: SNP_indel_CNV_Deletion_data_header_order plus NCBI-SRA
DOI: 10.6084/m9.figshare.1609678
title: Supplemental file S5 - PANTHER GO analysis.xlsx

description: Gene Ontology analysis of identified proteins<br>
DOI: 10.6084/m9.figshare.1609680
title: Explaining inter-individual variability in strategy selection: A cue weight learning approach - Experimental data

description: This is raw data from the experiment reported in Stojic, H., Olsson, H., and Analytis, P.P. (2016) "Explaining inter-individual variability in strategy selection: A cue weight learning approach". In: Proceedings of the 14th International Conference on Cognitive Modeling. University Park, PA: Penn State, 2016, pp. 144–150.See Readme file for more detailed descriptions of the datasets.
DOI: 10.6084/m9.figshare.1609682
title: Influence of mistletoe on woodland bird assemblages

description: These data relate to patch-scale woodland bird surveys, before and after data both relating to four combined standardized searches per patch (carried out seasonally). Data relate to richness (presence only) and incidence (number or samples in which species were recorded as present as a function of the total number of samples). Subsets of these two variables are presented relating to all species, woodland-dependent species, woodland-dependent residents, insectivores and ground-foraging insectivores.
DOI: 10.6084/m9.figshare.1609677
title: Supplemental file S4 - Multifasta of identified proteins.txt

description: Multifasta of identified proteins by mass spectrometry<br>
DOI: 10.6084/m9.figshare.1609682.v1
title: Influence of mistletoe on woodland bird assemblages

description: These data relate to patch-scale woodland bird surveys, before and after data both relating to four combined standardized searches per patch (carried out seasonally). Data relate to richness (presence only) and incidence (number or samples in which species were recorded as present as a function of the total number of samples). Subsets of these two variables are presented relating to all species, woodland-dependent species, woodland-dependent residents, insectivores and ground-foraging insectivores.
DOI: 10.6084/m9.figshare.1609677.v1
title: Supplemental file S4 - Multifasta of identified proteins.txt

description: Multifasta of identified proteins by mass spectrometry<br>
DOI: 10.6084/m9.figshare.1609678.v1
title: Supplemental file S5 - PANTHER GO analysis.xlsx

description: Gene Ontology analysis of identified proteins<br>
DOI: 10.6084/m9.figshare.1609676
title: Supplemental file S1 - RawData - PROPHET-Scaffold.xlsx

description: Raw data of quantification identified proteins by mass spectrometry<br>
DOI: 10.6084/m9.figshare.1609680.v2
title: Explaining inter-individual variability in strategy selection: A cue weight learning approach - Experimental data

description: This is raw data from the experiment reported in Stojic, H., Olsson, H., and Analytis, P.P. (2016) "Explaining inter-individual variability in strategy selection: A cue weight learning approach". In: Proceedings of the 14th International Conference on Cognitive Modeling. University Park, PA: Penn State, 2016, pp. 144–150.See Readme file for more detailed descriptions of the datasets.
DOI: 10.6084/m9.figshare.1609674
title: Supplemental file S3 - perl_scripts.zip

description: Perl scripts to run CHURNER<br>
DOI: 10.6084/m9.figshare.1609675
title: Supplementary Files_ part 2

description: Supplementary Files of the article A Sharpening Method of Satellite Thermal Image Based on the Geographical Statistical Model
DOI: 10.6084/m9.figshare.1609676.v1
title: Supplemental file S1 - RawData - PROPHET-Scaffold.xlsx

description: Raw data of quantification identified proteins by mass spectrometry<br>
DOI: 10.6084/m9.figshare.1609680.v1
title: Heuristic and Linear Models of Judgment: A Cue Weight Learning Perspective - Experimental data

description: This is raw data from the experiments described in the following article: Stojic, H., Olsson, H., & Analytis, P. P. "Heuristic and Linear Models of Judgment: A Cue Weight Learning Perspective".Some results from experiment 1 have been also reported in Stojic, H., Olsson, H., and Analytis, P.P. (2016) "Explaining inter-individual variability in strategy selection: A cue weight learning approach". In: Proceedings of the 14th International Conference on Cognitive Modeling. University Park, PA: Penn State, 2016, pp. 144–150.See Readme files for more detailed descriptions of the datasets.
DOI: 10.6084/m9.figshare.1609673
title: Supplemental file S2 - README.csh

description: Description of CHURNER scripts written in Perl<br>
DOI: 10.6084/m9.figshare.1609675.v1
title: Supplementary Files_ part 2

description: Supplementary Files of the article A Sharpening Method of Satellite Thermal Image Based on the Geographical Statistical Model
DOI: 10.6084/m9.figshare.1609668
title: Supplementary Files_ part 1

description: Supplementary Files of the article A Sharpening Method of Satellite Thermal Image Based on the Geographical Statistical Model
DOI: 10.6084/m9.figshare.1609668.v1
title: Supplementary Files_ part 1

description: Supplementary Files of the article A Sharpening Method of Satellite Thermal Image Based on the Geographical Statistical Model
DOI: 10.6084/m9.figshare.1609674.v2
title: Supplemental file S3 - perl_scripts.zip

description: Perl scripts to run CHURNER<br>
DOI: 10.6084/m9.figshare.1609691.v6
title: Cool Stars 19 Poster : The BASS-Ultracool Survey

description: This poster presents the status of the BASS-Ultracool survey that aims at detecting the T-type, planetary-mass members of young moving groups in the solar neighborhood. We present the first discovery from this survey; SDSS J1110+0116, a young T5.5 bona fide member of the AB Doradus moving group.
DOI: 10.6084/m9.figshare.1609673.v2
title: Supplemental file S2 - README.csh

description: Description of CHURNER scripts written in Perl<br>
DOI: 10.6084/m9.figshare.1609664
title: COD additional files

description: Additional data for "Online High-throughput Mutagenesis Designer Using Scoring Matrix of Sequence-specific Endonucleases" on the Journal of Integrative Bioinformatics, for the COD web service of cas9.wicp.net.
DOI: 10.6084/m9.figshare.1609673.v1
title: Supplemental file S4 - README.csh

description: Description of CHURNER scripts written in Perl<br>
DOI: 10.6084/m9.figshare.1609674.v1
title: Supplemental file S5 - perl_scripts.zip

description: Perl scripts to run CHURNER<br>
DOI: 10.6084/m9.figshare.1609664.v1
title: COD additional files

description: Additional data for "Online High-throughput Mutagenesis Designer Using Scoring Matrix of Sequence-specific Endonucleases" on the Journal of Integrative Bioinformatics, for the COD web service of cas9.wicp.net.
DOI: 10.6084/m9.figshare.1609661
title: Enriching time series datasets using Nonparametric kernel regression to improve forecasting accuracy

description: Improving the accuracy of prediction on future values based on the past and current observations has been pursued by enhancing the prediction's methods, combining those methods or performing data pre-processing. In this paper, another approach is taken, namely by increasing the number of input in the dataset. This approach would be useful especially for a shorter time series data. By filling the in-between values in the time series, the number of training set can be increased, thus increasing the generalization capability of the predictor. The algorithm used to make prediction is Neural Network as it is widely used in literature for time series tasks. For comparison, Support Vector Regression is also employed. The dataset used in the experiment is the frequency of USPTO's patents and PubMed's scientific publications on the field of health, namely on Apnea, Arrhythmia, and Sleep Stages. Another time series data designated for NN3 Competition in the field of transportation is also used for benchmarking. The experimental result shows that the prediction performance can be significantly increased by filling in-between data in the time series. Furthermore, the use of detrend and deseasonalization which separates the data into trend, seasonal and stationary time series also improve the prediction performance both on original and filled dataset. The optimal number of increase on the dataset in this experiment is about five times of the length of original dataset.
DOI: 10.6084/m9.figshare.1609619
title: Gaussian Job Archive for C8H13ClN2O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1609619.v1
title: Gaussian Job Archive for C8H13ClN2O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1609606
title: Capture duration, behaviour and SST's in longline caught gummy shark

description: Values of blood biochemistry and movement rates for gummy sharks in longline captures of known duration.
DOI: 10.6084/m9.figshare.1609612
title: Most discussed articles on diabetes in 2015 sorted by Altmetric score

description: See http://tuijasonkkila.fi/blog/2015/11/diabetes/
DOI: 10.6084/m9.figshare.1609606.v1
title: Capture duration, behaviour and SST's in longline caught gummy shark

description: Values of blood biochemistry and movement rates for gummy sharks in longline captures of known duration.
DOI: 10.6084/m9.figshare.1609612.v1
title: Most discussed articles on diabetes in 2015 sorted by Altmetric score

description: See http://tuijasonkkila.fi/blog/2015/11/diabetes/
DOI: 10.6084/m9.figshare.1609586
title: Crayfish species traded as pets by country

description: Supplemental material for: Faulkes Z. 2015. The global trade in crayfish as pets. <em>Crustacean Research</em> <strong>44</strong>: 75-92. http://dx.doi.org/10.18353/crustacea.44.0_75 See paper for full references for each country. This file includes includes the data used in Tables 1 and 2. Additionally, includes new data from Japan that was released shortly after article was accepted, from: Sunagawa M, Kawai T, Coughran J. 2015. The history and status quo of ornamental freshwater crustaceans in Japan. <em>Crayfish News</em> <strong>37</strong>(3): 8-11. <br><br>(<em>Crayfish News</em> is a newsletter of the International Association for Astacology: http://iz.carnegiemnh.org/crayfish/iaa/)
DOI: 10.6084/m9.figshare.1609586.v1
title: Crayfish species traded as pets by country

description: Supplemental material for: Faulkes Z. 2015. The global trade in crayfish as pets. <em>Crustacean Research</em> <strong>44</strong>: 75-92. http://dx.doi.org/10.18353/crustacea.44.0_75 See paper for full references for each country. This file includes includes the data used in Tables 1 and 2. Additionally, includes new data from Japan that was released shortly after article was accepted, from: Sunagawa M, Kawai T, Coughran J. 2015. The history and status quo of ornamental freshwater crustaceans in Japan. <em>Crayfish News</em> <strong>37</strong>(3): 8-11. <br><br>(<em>Crayfish News</em> is a newsletter of the International Association for Astacology: http://iz.carnegiemnh.org/crayfish/iaa/)
DOI: 10.6084/m9.figshare.1608986
title: Implementation and comparison of existing occupant behaviour models in EnergyPlus

description: To incorporate occupant behaviour in building performance simulation (BPS), researchers have developed a number of occupant behaviour and presence models based on long-term field observations. This paper describes the implementation of models from the literature for predicting occupancy and use of operable windows, blinds, lighting, and clothing for offices in the BPS tool EnergyPlus. In order to make the occupant models from the literature more widely available to researchers and practitioners, the EnergyPlus energy management system scripts are made publicly available. The paper then presents a comparison of the model predictions based on a typical office and demonstrates how differences in these models influence BPS results. In general, the window, blinds, and lighting use model predictions vary significantly from model to another. Despite these significant variations, the BPS models with different occupant behaviour model combinations provided consistent load reduction predictions in response to design changes.
DOI: 10.6084/m9.figshare.1608977
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1608978
title: Gaussian Job Archive for C20H22BrCl2NO5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1608977.v1
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1608978.v1
title: Gaussian Job Archive for C20H22BrCl2NO5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1608867
title: Cancer of the Prostate in New York State, by ZIP code, 1994-1998

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608868
title: Serico_ONLY_aligned_Fastas.tar.gz

description: Data matrix with orthologs shared among three Sericomyrmex species whose transcriptomes were sequenced in this study.
DOI: 10.6084/m9.figshare.1608866
title: Cancer of the Lung and Bronchus in New York State, by ZIP code, 1993-1997

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608867.v1
title: Cancer of the Prostate in New York State, by ZIP code, 1994-1998

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608865
title: Cancer of the Colon and Rectum in New York State, by ZIP code, 1993-1997

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608866.v1
title: Cancer of the Lung and Bronchus in New York State, by ZIP code, 1993-1997

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608863
title: Breast cancer in New York State, by ZIP code, 1993-1997

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.1608857
title: Data for PeerJ Pre-print: A new experimental host for Francisella tularensis

description: This is the raw data that accompanies the PeerJ Pre-print entitled "Cockroaches join the fight against infection: an improved insect host system for Francisella tularensis."
DOI: 10.6084/m9.figshare.1608856
title: A novel role for atypical MAPK kinase ERK3 in regulating breast cancer cell morphology and migration

description: ERK3 is an atypical Mitogen-activated protein kinases (MAPK6). Despite the fact that the <i>Erk3</i> gene was originally identified in 1991, its function is still unknown. MK5 (MAP kinase- activated protein kinase 5) also called PRAK is the only known substrate for ERK3. Recently, it was found that group I p21 protein activated kinases (PAKs) are critical effectors of ERK3. PAKs link Rho family of GTPases to actin cytoskeletal dynamics and are known to be involved in the regulation of cell adhesion and migration. In this study we demonstrate that ERK3 protein levels are elevated as MDA-MB-231 breast cancer cells adhere to collagen I which is concomitant with changes in cellular morphology where cells become less well spread following nascent adhesion formation. During this early cellular adhesion event we observe that the cells retain protrusive activity whilst reducing overall cellular area. Interestingly exogenous expression of ERK3 delivers a comparable reduction in cell spread area, whilst depletion of ERK3 expression increases cell spread area. Importantly, we have detected a novel specific endogenous ERK3 localization at the cell periphery. Furthermore we find that ERK3 overexpressing cells exhibit a rounded morphology and increased cell migration speed. Surprisingly, exogenous expression of a kinase inactive mutant of ERK3 phenocopies ERK3 overexpression, suggesting a novel kinase independent function for ERK3. Taken together our data suggest that as cells initiate adhesion to matrix increasing levels of ERK3 at the cell periphery are required to orchestrate cell morphology changes which can then drive migratory behaviour.
DOI: 10.6084/m9.figshare.1608857.v1
title: Data for PeerJ Pre-print: A new experimental host for Francisella tularensis

description: This is the raw data that accompanies the PeerJ Pre-print entitled "Cockroaches join the fight against infection: an improved insect host system for Francisella tularensis."
DOI: 10.6084/m9.figshare.1608856.v1
title: A novel role for atypical MAPK kinase ERK3 in regulating breast cancer cell morphology and migration

description: ERK3 is an atypical Mitogen-activated protein kinases (MAPK6). Despite the fact that the <i>Erk3</i> gene was originally identified in 1991, its function is still unknown. MK5 (MAP kinase- activated protein kinase 5) also called PRAK is the only known substrate for ERK3. Recently, it was found that group I p21 protein activated kinases (PAKs) are critical effectors of ERK3. PAKs link Rho family of GTPases to actin cytoskeletal dynamics and are known to be involved in the regulation of cell adhesion and migration. In this study we demonstrate that ERK3 protein levels are elevated as MDA-MB-231 breast cancer cells adhere to collagen I which is concomitant with changes in cellular morphology where cells become less well spread following nascent adhesion formation. During this early cellular adhesion event we observe that the cells retain protrusive activity whilst reducing overall cellular area. Interestingly exogenous expression of ERK3 delivers a comparable reduction in cell spread area, whilst depletion of ERK3 expression increases cell spread area. Importantly, we have detected a novel specific endogenous ERK3 localization at the cell periphery. Furthermore we find that ERK3 overexpressing cells exhibit a rounded morphology and increased cell migration speed. Surprisingly, exogenous expression of a kinase inactive mutant of ERK3 phenocopies ERK3 overexpression, suggesting a novel kinase independent function for ERK3. Taken together our data suggest that as cells initiate adhesion to matrix increasing levels of ERK3 at the cell periphery are required to orchestrate cell morphology changes which can then drive migratory behaviour.
DOI: 10.6084/m9.figshare.1608860.v1
title: The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNA <i>sinI</i> in <i>Sinorhizobium meliloti</i>

description: Quorum sensing is a cell density-dependent communication system of bacteria relying on autoinducer molecules. During the analysis of the post-transcriptional regulation of quorum sensing in the nitrogen fixing plant symbiont <i>Sinorhizobium meliloti</i> we predicted and verified a direct interaction between the 5′-UTR of <i>sinI</i> mRNA encoding the autoinducer synthase and a small RNA (sRNA), which we named RcsR1. <i>In vitro</i>, RcsR1 prevented cleavage in the 5′-UTR of <i>sinI</i> by RNase E and impaired <i>sinI</i> translation. In line with low ribosomal occupancy and transcript destabilization upon binding of RcsR1 to <i>sinI</i>, overproduction of RcsR1 in <i>S. meliloti</i> resulted in lower level and shorter half-life of <i>sinI</i> mRNA, and in decreased autoinducer amount. Although RcsR1 can influence quorum sensing via <i>sinI</i>, its level did not vary at different cell densities, but decreased under salt stress and increased at low temperature. We found that RcsR1 and its stress-related expression pattern, but not the interaction with <i>sinI</i> homologs, are conserved in <i>Sinorhizobium, Rhizobium</i> and <i>Agrobacterium</i>. Consistently, overproduction of RcsR1 in <i>S. meliloti</i> and <i>Agrobacterium tumefaciens</i> inhibited growth at high salinity. We identified conserved targets of RcsR1 and showed that most conserved interactions and the effect on growth under salt stress are mediated by the first stem-loop of RcsR1, while its central part is responsible for the species-specific interaction with <i>sinI</i>. We conclude that RcsR1 is an ancient, stress-related riboregulator in rhizobia and propose that it links stress responses to quorum sensing in <i>S. meliloti</i>.