cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14642897
title: Additional file 5 of Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

description: Additional file 5. Abundance of genera specific to acontia (versus whole anemones) based on an indicator value analysis (A-D). Five genera were present in all genotypes, and their abundance across all genotypes is presented in E.
DOI: 10.6084/m9.figshare.14642897.v1
title: Additional file 5 of Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

description: Additional file 5. Abundance of genera specific to acontia (versus whole anemones) based on an indicator value analysis (A-D). Five genera were present in all genotypes, and their abundance across all genotypes is presented in E.
DOI: 10.6084/m9.figshare.14642900
title: Additional file 6 of Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

description: Additional file 6. List of contaminants identified in the 16S rRNA metabarcoding data.
DOI: 10.6084/m9.figshare.14642900.v1
title: Additional file 6 of Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

description: Additional file 6. List of contaminants identified in the 16S rRNA metabarcoding data.
DOI: 10.6084/m9.figshare.14642978
title: Additional file 1 of Hybridisation in kiwi (Apteryx; Apterygidae) requires taxonomic revision for the Great Spotted Kiwi

description: Additional file 1: Table S1. Morphological measurements of kiwi species and hybrid individuals analysed in this paper.
DOI: 10.6084/m9.figshare.14642978.v1
title: Additional file 1 of Hybridisation in kiwi (Apteryx; Apterygidae) requires taxonomic revision for the Great Spotted Kiwi

description: Additional file 1: Table S1. Morphological measurements of kiwi species and hybrid individuals analysed in this paper.
DOI: 10.6084/m9.figshare.14642998
title: Additional file 2 of Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia

description: Additional file 2. Table S1. Summary table of all annotated Wolbachia genomes used in this study including the newly sequenced strain from E. cassioides. For each genome the taxonomic. Table S2. Summary data for all genotyped individuals.
DOI: 10.6084/m9.figshare.14642998.v1
title: Additional file 2 of Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia

description: Additional file 2. Table S1. Summary table of all annotated Wolbachia genomes used in this study including the newly sequenced strain from E. cassioides. For each genome the taxonomic. Table S2. Summary data for all genotyped individuals.
DOI: 10.6084/m9.figshare.14643139
title: Additional file 3 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 3: Table S2. GO categorization of annotated D263 genes.
DOI: 10.6084/m9.figshare.14643142
title: Additional file 4 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 4: Table S3. Identified D263 proteins from the MUCase activity bands Cel1–Cel7.
DOI: 10.6084/m9.figshare.14643142.v1
title: Additional file 4 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 4: Table S3. Identified D263 proteins from the MUCase activity bands Cel1–Cel7.
DOI: 10.6084/m9.figshare.14643145.v1
title: Additional file 5 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 5: Table S4. Identified D263 proteins from the CMCase activity bands Endo1–Endo4.
DOI: 10.6084/m9.figshare.14643145
title: Additional file 5 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 5: Table S4. Identified D263 proteins from the CMCase activity bands Endo1–Endo4.
DOI: 10.6084/m9.figshare.14643148
title: Additional file 6 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 6: Table S5. Mapping statistics of D263 genome.
DOI: 10.6084/m9.figshare.14643148.v1
title: Additional file 6 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 6: Table S5. Mapping statistics of D263 genome.
DOI: 10.6084/m9.figshare.14643139.v1
title: Additional file 3 of From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

description: Additional file 3: Table S2. GO categorization of annotated D263 genes.
DOI: 10.6084/m9.figshare.14643154
title: Additional file 2 of Repurposing beta-3 adrenergic receptor agonists for Alzheimer’s disease: beneficial effects in a mouse model

description: Additional file 2. Other AD markers not affected by CL-316,243 treatment. Relative optical density of proteins normalized on actin measured in detergent-soluble fraction of hippocampus homogenates by Western Blot. Data are represented as mean ± SD, n = 9-12 per group. Abbreviations: AKT: protein kinase B; APP: amyloid precursor protein; BACE-1: beta-secretase 1; GFAP: glial fibrillary acidic protein; GLUT1: glucose transporter 1; GSK3β, glycogen synthase kinase 3β; IDE: insulin degrading enzyme; LRP1: low density lipoprotein receptor related protein 1; PSD95: post-synaptic density 95; RAGE: receptor of advanced glycation end products; sAPPα: soluble α-APP
DOI: 10.6084/m9.figshare.14643154.v1
title: Additional file 2 of Repurposing beta-3 adrenergic receptor agonists for Alzheimer’s disease: beneficial effects in a mouse model

description: Additional file 2. Other AD markers not affected by CL-316,243 treatment. Relative optical density of proteins normalized on actin measured in detergent-soluble fraction of hippocampus homogenates by Western Blot. Data are represented as mean ± SD, n = 9-12 per group. Abbreviations: AKT: protein kinase B; APP: amyloid precursor protein; BACE-1: beta-secretase 1; GFAP: glial fibrillary acidic protein; GLUT1: glucose transporter 1; GSK3β, glycogen synthase kinase 3β; IDE: insulin degrading enzyme; LRP1: low density lipoprotein receptor related protein 1; PSD95: post-synaptic density 95; RAGE: receptor of advanced glycation end products; sAPPα: soluble α-APP
DOI: 10.6084/m9.figshare.14643157
title: Additional file 3 of Repurposing beta-3 adrenergic receptor agonists for Alzheimer’s disease: beneficial effects in a mouse model

description: Additional file 3. Antibodies used in this study
DOI: 10.6084/m9.figshare.14643157.v1
title: Additional file 3 of Repurposing beta-3 adrenergic receptor agonists for Alzheimer’s disease: beneficial effects in a mouse model

description: Additional file 3. Antibodies used in this study
DOI: 10.6084/m9.figshare.14643161
title: Additional file 1 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 1. Name and position on linkage group and Pachón reference genome of the QTL markers used in this study.
DOI: 10.6084/m9.figshare.14643161.v1
title: Additional file 1 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 1. Name and position on linkage group and Pachón reference genome of the QTL markers used in this study.
DOI: 10.6084/m9.figshare.14643164.v1
title: Additional file 2 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 2. Phenotype and genotype data for the F2 mapping population.
DOI: 10.6084/m9.figshare.14643167.v1
title: Additional file 3 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 3: Population genetic analysis of genes on the scaffold with the peak marker of QTLs identified in this study.
DOI: 10.6084/m9.figshare.14643170
title: Additional file 4 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 4: Predicted changes to the amino acid sequence based on cDNA alignments of genes within metabolism-related QTL that display evidence of non-neutral evolution by HapFLK analysis, have differences between Río Choy surface fish and Pachón cavefish, but are not homozygous and different in all samples (n = 10 fish per population). Table indicates number of individuals from each population that are homozygous and heterozygous for the indicated change.
DOI: 10.6084/m9.figshare.14643170.v1
title: Additional file 4 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 4: Predicted changes to the amino acid sequence based on cDNA alignments of genes within metabolism-related QTL that display evidence of non-neutral evolution by HapFLK analysis, have differences between Río Choy surface fish and Pachón cavefish, but are not homozygous and different in all samples (n = 10 fish per population). Table indicates number of individuals from each population that are homozygous and heterozygous for the indicated change.
DOI: 10.6084/m9.figshare.14643167
title: Additional file 3 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 3: Population genetic analysis of genes on the scaffold with the peak marker of QTLs identified in this study.
DOI: 10.6084/m9.figshare.14643164
title: Additional file 2 of Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation

description: Additional file 2. Phenotype and genotype data for the F2 mapping population.
DOI: 10.6084/m9.figshare.14643199
title: Additional file 12 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 11: Table S2. Results of the three-way PERMANOVA test of β-diversity analyses conducted for all treatments and time periods of the experiment.
DOI: 10.6084/m9.figshare.14643196.v1
title: Additional file 11 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 10: Table S1. Details of the conditions and sources used to isolate consortium members, as well as the NCBI deposit identification numbers.
DOI: 10.6084/m9.figshare.14643202
title: Additional file 13 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 12: Table S3. Pairwise three-way PERMANOVA test of β-diversity analyses, comparing all time periods of the experiment.
DOI: 10.6084/m9.figshare.14643202.v1
title: Additional file 13 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 12: Table S3. Pairwise three-way PERMANOVA test of β-diversity analyses, comparing all time periods of the experiment.
DOI: 10.6084/m9.figshare.14643196
title: Additional file 11 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 10: Table S1. Details of the conditions and sources used to isolate consortium members, as well as the NCBI deposit identification numbers.
DOI: 10.6084/m9.figshare.14643199.v1
title: Additional file 12 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 11: Table S2. Results of the three-way PERMANOVA test of β-diversity analyses conducted for all treatments and time periods of the experiment.
DOI: 10.6084/m9.figshare.14643211.v1
title: Additional file 3 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 2: Figure S1. Photographs of all replicates for each treatment at T0, T1 and T2 on Coral Watch Health Card. A) Treatments without Corexit 9500; B) Treatments with Corexit 9500.
DOI: 10.6084/m9.figshare.14643211
title: Additional file 3 of Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

description: Additional file 2: Figure S1. Photographs of all replicates for each treatment at T0, T1 and T2 on Coral Watch Health Card. A) Treatments without Corexit 9500; B) Treatments with Corexit 9500.
DOI: 10.6084/m9.figshare.14643242
title: Additional file 1 of Relationship of urinary liver-type fatty acid-binding protein with cardiovascular risk factors in the Japanese population without chronic kidney disease: Sasayama study

description: Additional file 1: Supplement Table 1. OR of high-normal L-FABP levels (Q5) associated with CVD risk factors among normoalbuminuria and normal eGFR participants.
DOI: 10.6084/m9.figshare.14643242.v1
title: Additional file 1 of Relationship of urinary liver-type fatty acid-binding protein with cardiovascular risk factors in the Japanese population without chronic kidney disease: Sasayama study

description: Additional file 1: Supplement Table 1. OR of high-normal L-FABP levels (Q5) associated with CVD risk factors among normoalbuminuria and normal eGFR participants.
DOI: 10.6084/m9.figshare.14643257.v1
title: Additional file 2 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 2: Supplementary Table S2. Gene promoters gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643257
title: Additional file 2 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 2: Supplementary Table S2. Gene promoters gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643260
title: Additional file 3 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 3: Supplementary Table S3. Gene promoters losing H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643263
title: Additional file 4 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 4: Supplementary Table S4. Biological processes (BP) result of genes gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643263.v1
title: Additional file 4 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 4: Supplementary Table S4. Biological processes (BP) result of genes gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643269
title: Additional file 6 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 6: Supplementary Table S6. Kyoto Encyclopedia of Genes and Genomes (KEGG) result of genes gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643266.v1
title: Additional file 5 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 5: Supplementary Table S5. Biological processes (BP) result of genes losing H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643260.v1
title: Additional file 3 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 3: Supplementary Table S3. Gene promoters losing H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643269.v1
title: Additional file 6 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 6: Supplementary Table S6. Kyoto Encyclopedia of Genes and Genomes (KEGG) result of genes gaining H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643266
title: Additional file 5 of Calcitonin gene-related peptide regulates spinal microglial activation through the histone H3 lysine 27 trimethylation via enhancer of zeste homolog-2 in rats with neuropathic pain

description: Additional file 5: Supplementary Table S5. Biological processes (BP) result of genes losing H3K27me3 in CGRP treated group.
DOI: 10.6084/m9.figshare.14643277
title: Additional file 2 of An epilepsy-causing mutation leads to co-translational misfolding of the Kv7.2 channel

description: Additional file 2. Data on which the conclusions rely.
DOI: 10.6084/m9.figshare.14643277.v1
title: Additional file 2 of An epilepsy-causing mutation leads to co-translational misfolding of the Kv7.2 channel

description: Additional file 2. Data on which the conclusions rely.
DOI: 10.6084/m9.figshare.14643323
title: Additional file 2 of Homeward bound: canopy cover and species identity influence non-breeding season homing success and speed in forest birds

description: Additional file 2. Dataset.
DOI: 10.6084/m9.figshare.14643323.v1
title: Additional file 2 of Homeward bound: canopy cover and species identity influence non-breeding season homing success and speed in forest birds

description: Additional file 2. Dataset.
DOI: 10.5281/zenodo.4780663
title: Recovering ecosystem functions in a restored salt marsh by leveraging positive effects of biodiversity

description: Includes files associated with the Ecosphere manuscript entitled "Recovering ecosystem functions in a restored salt marsh by leveraging positive effects of biodiversity." The file entitled "Fitzgerald et al. 2021 Ecosphere data.xlsx" includes six worksheets; the first tab of this file is metadata for each column of the subsequent data tabs.
DOI: 10.5281/zenodo.4780662
title: Recovering ecosystem functions in a restored salt marsh by leveraging positive effects of biodiversity

description: Includes files associated with the Ecosphere manuscript entitled "Recovering ecosystem functions in a restored salt marsh by leveraging positive effects of biodiversity." The file entitled "Fitzgerald et al. 2021 Ecosphere data.xlsx" includes six worksheets; the first tab of this file is metadata for each column of the subsequent data tabs.
DOI: 10.6084/m9.figshare.14642904
title: Final Averaged Data

description: this dataset contains the average and standard deviation of the GRF, EMG, kinematic, and kinetic data for 12 participants stored in a Matlab structure. The data includes ground reaction forces, EMG of 8 muscles on the right leg, joint kinematics, and kinetics. The processing techniques used are described in detail in a paper in review.<br>Each column in the n-by-8 matrix of EMG data represents 1 muscle of the right leg. The order is: Soleus, Tibialis anterior, Medial Gastrocnemius, Lateral Gastrocnemius, Rectus Femoris, Vastus Medialis, Vastus Lateralis, Biceps Femoris.<br>
DOI: 10.6084/m9.figshare.14642835
title: Subject averaged kinematic and kinetic data

description: Each data file contains the averaged kinematic and kinetic data for 1 participant stored in a Matlab structure. The original data was collected with Optitrack and processed in Visual3D and Matlab. The processing techniques used are described in detail in a paper in review.
DOI: 10.6084/m9.figshare.14642832
title: Kinematics, Kinetics, and Temporal data - Processed

description: Each data file contains the processed kinematic, kinetic, and temporal data for 1 participant stored in a Matlab structure. The original data was collected with Optitrack and processed in Visual3D, then processed in Matlab. The processing techniques used are described in detail in a paper in review.
DOI: 10.6084/m9.figshare.14642829
title: Kinematics, Kinetics, and Temporal data - from V3D

description: Each data file contains the kinematic, kinetic, and temporal data for 1 participant stored in a Matlab structure. The original data was collected with Optitrack and processed in Visual3D. The processing techniques used are described in detail in a paper in review.
DOI: 10.6084/m9.figshare.14642826
title: Subject averaged EMG and GRF data

description: Each data file contains the processed EMG, and GRF data for 1 participant stored in a Matlab structure. The processing techniques used are described in detail in a paper in review. <br>Each column in the n-by-8 matrix of EMG data represents 1 muscle of the right leg. The order is: Soleus, Tibialis anterior, Medial Gastrocnemius, Lateral Gastrocnemius, Rectus Femoris, Vastus Medialis, Vastus Lateralis, Biceps Femoris.<br>Details on rejected conditions are also included in this data.
DOI: 10.6084/m9.figshare.14642817
title: EMG and GRF data - Raw

description: Each data file contains the unprocessed EMG, GRF, load cell, and timing gate data for 1 participant stored in a Matlab structure.Each column in the n-by-8 matrix of EMG data represents 1 muscle. The order is: Soleus, Tibialis anterior, Medial Gastrocnemius, Lateral Gastrocnemius, Rectus Femoris, Vastus Medialis, Vastus Lateralis, Biceps Femoris.The 3 forceplates are in a straight line. The order of the force plates is: 3, 1, 2. (i.e. the forceplates are not aligned numerically).
DOI: 10.5281/zenodo.4780625
title: Material classification from sparse spectral X-ray CT using vectorial total variation based on L infinity norm

description: Data behind the publications: 1. Jumanazarov, D., Koo, J., Jan Kehres, Poulsen, H. F., Olsen, U. L., and Iovea, M., Material classification from sparse spectral X-ray CT using vectorial total variation based on L infinity norm," Submitted to <em>NDT & E International</em> (2021). 2. Doniyor Jumanazarov, Jakeoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea, "The significance of the spectral correction of photon counting detector response in material classification from spectral x-ray CT," Proc. SPIE 11771, Quantum Optics and Photon Counting 2021, 117710J (18 April 2021); https://doi.org/10.1117/12.2589290 3. Doniyor Jumanazarov, Jakeoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea, ''Method for system-independent material classification through basis material decomposition from spectral X-ray CT''. In preparation for submission to Journal for <em>22nd International Workshops on Radiation Imaging Detectors</em>, 2021, Ghent.