cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/zdb-jm3-f3z
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3r-vex-qsa
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4k-4f4-1jx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.c54877
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Amphibia and Reptilia",
 "Country is Croatia"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005300-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/nvkzjl
title: Application of biotransformed babassu oil in food

description: This thesis chapter describes the development of a multifunctional bioingredient through an enzymatic process applied to a native Amazonian oil. The resulting product exhibited both aromatic and antimicrobial properties, making it suitable for use in food systems that demand clean-label, natural alternatives. Its bacteriostatic activity was observed against key foodborne pathogens, reinforcing its preservative potential. The ingredient was tested in selected model food applications—such as frozen desserts, aerated emulsions, and sugar-based confectionery—demonstrating compatibility with diverse formulations and maintaining its volatile and functional attributes. The findings contribute to the sustainable valorization of regional biodiversity through food-grade biotechnological innovation. The data cannot be made available for intellectual property protection reasons. For more information, contact the deposit managers.
DOI: 10.5281/zenodo.14030687
title: Analysis of PXD057215

description: This repository contains a dataset analyzed in "De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition".

Specifically, this repository contains the analysis of the protein-SIP data deposited to PXD057215("De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition").

xlsx file originates from merging Unipept and MetaProSIP output
DOI: 10.5281/zenodo.15536899
title: Analysis of PXD057215

description: This repository contains a dataset analyzed in "De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution".

Specifically, this repository contains the analysis of the protein-SIP data deposited to PXD057215 ("De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition").

xlsx file originates from merging Unipept and MetaProSIP output
DOI: 10.5281/zenodo.15536862
title: TABLE 1 in Analyses of body condition and digestive / metabolic parameters of Odontesthes argentinensis (Atherinopsidae) from Mar Chiquita Coastal Lagoon (Argentina) during different phases of ovarian development

description: TABLE 1 | Measurements of morphological/morphometrical and body condition parameters of Odontesthes argentinensis from Mar Chiquita Coastal Lagoon, at different phases of ovarian development. N = Number of samples; SD = Standard deviation; GSI = Gonadosomatic index; HIS = Hepatosomatic index; IC = Intestinal coefficient. Different letters indicate significant differences (one-way ANOVA; p <0.05).
Physical TraitsPhase II N = 18Phase III N = 10Phase IIIas N = 13P valueMeanRangeSDMeanRangeSDMeanRangeSDTotal length (mm)317 a/b255–37836.92300 a294–38548.5349 b331–40039.70.01Body weight (g)255 a112–42391222.1 a214–41499382 b256–6351490.003Gonad weight (g)2.00 a0.2–3.51.14.1 a1.2–71.631.56 b10.3–73.518.4<0.0001Liver weight (g)5.1 a1.3–11.53.204.5 a1.8–92.378.8 b0.7–19.25.60.02Intestinal length (mm)279 a/b175–37044266 a147–32056324 b205–414660.03Intestinal weight (g)7.62.7–173.65.51–10.33.111.21.9–38.110.90.1Intestinal content weight (g)4.60.7–9.22.53.01.0–6.81.96.60.5–31.93.30.2GSI (%)0.8 a0.1–1.80.32.1 b1.0–5.30.68.9 c3.6–10.73.3<0.0001HSI (%)1.91.2–3.40.72.31.4–3.01.82.21.5–3.10.80.09IC (%)1.10.7–1.30.11.10.9–1.40.21.10.9–1.20.10.4
description: Published as part of Mendez, Eugenia, Albanesi, Camila, Michiels, María Soledad, López-Mañanes, Alejandra & González-Castro, Mariano, 2024, Neotropical Ichthyology 22 (3) on page e 230139, DOI: 10.1590/1982-0224-2023-0139, http://zenodo.org/record/15536649
DOI: 10.5281/zenodo.15536863
title: TABLE 1 in Analyses of body condition and digestive / metabolic parameters of Odontesthes argentinensis (Atherinopsidae) from Mar Chiquita Coastal Lagoon (Argentina) during different phases of ovarian development

description: TABLE 1 | Measurements of morphological/morphometrical and body condition parameters of Odontesthes argentinensis from Mar Chiquita Coastal Lagoon, at different phases of ovarian development. N = Number of samples; SD = Standard deviation; GSI = Gonadosomatic index; HIS = Hepatosomatic index; IC = Intestinal coefficient. Different letters indicate significant differences (one-way ANOVA; p <0.05).
Physical TraitsPhase II N = 18Phase III N = 10Phase IIIas N = 13P valueMeanRangeSDMeanRangeSDMeanRangeSDTotal length (mm)317 a/b255–37836.92300 a294–38548.5349 b331–40039.70.01Body weight (g)255 a112–42391222.1 a214–41499382 b256–6351490.003Gonad weight (g)2.00 a0.2–3.51.14.1 a1.2–71.631.56 b10.3–73.518.4<0.0001Liver weight (g)5.1 a1.3–11.53.204.5 a1.8–92.378.8 b0.7–19.25.60.02Intestinal length (mm)279 a/b175–37044266 a147–32056324 b205–414660.03Intestinal weight (g)7.62.7–173.65.51–10.33.111.21.9–38.110.90.1Intestinal content weight (g)4.60.7–9.22.53.01.0–6.81.96.60.5–31.93.30.2GSI (%)0.8 a0.1–1.80.32.1 b1.0–5.30.68.9 c3.6–10.73.3<0.0001HSI (%)1.91.2–3.40.72.31.4–3.01.82.21.5–3.10.80.09IC (%)1.10.7–1.30.11.10.9–1.40.21.10.9–1.20.10.4
description: Published as part of Mendez, Eugenia, Albanesi, Camila, Michiels, María Soledad, López-Mañanes, Alejandra & González-Castro, Mariano, 2024, Neotropical Ichthyology 22 (3) on page e 230139, DOI: 10.1590/1982-0224-2023-0139, http://zenodo.org/record/15536649
DOI: 10.15468/dl.mjx6z2
title: Occurrence Download

description: A dataset containing 187576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Cirsium arvense (L.) Scop.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 187576 records from 420 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007525-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58099/pk/ip2a6x
title: Analiza wpływu procesu matowienia powierzchni zewnętrznej obiektu mierzonego na niepewność współrzędnościowego pomiaru optycznego – dane badawcze
title: Analysis of the influence that the matting process of the external surface of the measured object has on the uncertainty of coordinate optical measurement - research data

description: Dane źródłowe uzyskane w ramach działania naukowego pt. "Analiza wpływu procesu matowienia powierzchni zewnętrznej obiektu mierzonego na niepewność współrzędnościowego pomiaru optycznego" realizowanego w ramach projektu NCN MINIATURA 7 nr 2023/07/X/ST8/00845.
description: Obiekt mierzony przed pomiarem oczyszcza się, poddaje stabilizacji termicznej, poddaje procesowi matowienia. Matowieniu podlegają przede wszystkim powierzchnie o wysokim współczynniku odbicia światła i transparentne, również lakierowane lub czarne. Pokrycie obiektu warstwą proszku umożliwia przeprowadzenie dokładniejszego pomiaru, niemniej wiąże się jednocześnie z ingerencją w powierzchnie obiektu, jak podają producenci na poziomie kilku mikrometrów, niemniej jest to poziom dokładności jaki osiągają już maszyny pomiarowe optyczne.
W ramach działania naukowego przeprowadzono badania podstawowe celem wykazania w jakim stopniu proces matowienia powierzchni mierzonych determinuje ostateczny wynik współrzędnościowego pomiaru optycznego oraz związaną z nim niepewność pomiaru.
DOI: 10.15468/dl.qppdnh
title: Occurrence Download

description: A dataset containing 3205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteridium aquilinum subsp. japonicum (Nakai) Á.Löve & D.Löve",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3205 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019662-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nymwg6
title: Occurrence Download

description: A dataset containing 6232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Stomis pumicatus (Panzer, 1796)"
 ]
}

 The dataset includes 6232 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019663-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2b8ck
title: Occurrence Download

description: A dataset listing the 1570 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Zimbabwe",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset's 1570 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019658-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14936348
title: Data and code for Callaway et al. (2025): Exotic invasive plant species increase primary productivity, but not in their native ranges.

description: The files here correspond to four analyses, structured according to the publication Callaway et al. (2025):

1) Field data on plants (ANPP and vegetation cover)2) Field data on nitrogen content (ammonium and nitrate)3) Common garden data on plants (ANPP)4) Common garden data on nitrogen content (ammonium and nitrate)

For each section, there is a corresponding R script and an Excel file containing the data. The descriptions of the variables can be found in the respective Excel files under the worksheet "Metadata", while the data itself is located in the "Data" worksheet.

Additionally, there is an R script, called my_graphs.r specifically for the visual representation of the box-violin plots.
DOI: 10.5281/zenodo.14936347
title: Data and code for Callaway et al. (2025): Exotic invasive plant species increase primary productivity, but not in their native ranges.

description: The files here correspond to four analyses, structured according to the publication Callaway et al. (2025):

1) Field data on plants (ANPP and vegetation cover): 2) Field data on nitrogen content (ammonium and nitrate)3) Common garden data on plants (ANPP)4) Common garden data on nitrogen content (ammonium and nitrate)

For each section, there is a corresponding R script and an Excel file containing the data (no specific order needed to use the scripts): 

1) field_plants.xlsx & field_plants.R2) field_nitrogen.xlsx & field_nitrogen.R3) common_garden_plants.xlsx & common_garden_plants.R4) common_garden_nitrogen.xlsx & common_garden_nitrogen.R

The descriptions of the variables can be found in the respective Excel files under the worksheet "Metadata", while the data itself is located in the "Data" worksheet. Note that in addition to the .xlsx files, we have also also uploaded .csv files for better long-term accessibility.

Additionally, there is an R script, called 

5) my_graphs.R 

which is specifically needed for the visual representation of the box-violin plots.

Moreover, there is an R script available that can be used to calculate the LRRs (log response ratios):

6) create_LRRs_example_field_biomass.R

In this script, the LRR was calculated as an example for field biomass, and the same structure can be applied to all other variables used. However, the LRRs are already included in the main data tables, so you don’t need to calculate them again. Still, you can use this script to check how they were calculated and verify whether the calculations were done correctly.
DOI: 10.5281/zenodo.15357415
title: Data and code for Callaway et al. (2025): Exotic invasive plant species increase primary productivity, but not in their native ranges.

description: The files here correspond to four analyses, structured according to the publication Callaway et al. (2025):

1) Field data on plants (ANPP and vegetation cover): 2) Field data on nitrogen content (ammonium and nitrate)3) Common garden data on plants (ANPP)4) Common garden data on nitrogen content (ammonium and nitrate)

For each section, there is a corresponding R script and an Excel file containing the data (no specific order needed to use the scripts): 

1) field_plants.xlsx & field_plants.R2) field_nitrogen.xlsx & field_nitrogen.R3) common_garden_plants.xlsx & common_garden_plants.R4) common_garden_nitrogen.xlsx & common_garden_nitrogen.R

The descriptions of the variables can be found in the respective Excel files under the worksheet "Metadata", while the data itself is located in the "Data" worksheet. Note that in addition to the .xlsx files, we have also also uploaded .csv files for better long-term accessibility.

Additionally, there is an R script, called 

5) my_graphs.R 

which is specifically needed for the visual representation of the box-violin plots.

Moreover, there is an R script available that can be used to calculate the LRRs (log response ratios):

6) create_LRRs_example_field_biomass.R

In this script, the LRR was calculated as an example for field biomass, and the same structure can be applied to all other variables used. However, the LRRs are already included in the main data tables, so you don’t need to calculate them again. Still, you can use this script to check how they were calculated and verify whether the calculations were done correctly.
DOI: 10.15468/dl.rwp4fp
title: Occurrence Download

description: A dataset containing 545359 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Setophaga castanea (A.Wilson, 1810)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 545359 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019651-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/28778062
title: spreadsheets_for_nature: data points plotted in figures for paper (nature publication requirement)

description: Dopaminergic action prediction errors serve as a value-free teaching signalAnimals’ choice behavior is characterized by two main tendencies: taking actions that led to rewards and repeating past actions. Theory suggests these strategies may be reinforced by different types of dopaminergic teaching signals: reward prediction error to reinforce value-based associations and movement-based action prediction errors to reinforce value-free repetitive associations. Here we use an auditory-discrimination task in mice to show that movement-related dopamine activity in the tail of the striatum encodes the hypothesized action prediction error signal. Causal manipulations reveal that this prediction error serves as a value-free teaching signal that supports learning by reinforcing repeated associations. Computational modelling and experiments demonstrate that action prediction errors alone cannot support reward-guided learning but when paired with the reward prediction error circuitry they serve to consolidate stable sound-action associations in a value-free manner. Together we show that there are two types of dopaminergic prediction errors that work in tandem to support learning, each reinforcing different types of association in different striatal areas.Spreadsheets of all data points in all plots required by Nature, this is required for publication
DOI: 10.15468/dl.74p6ds
title: Occurrence Download

description: A dataset containing 15500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Bembidion quadrimaculatum (Linnaeus, 1760)"
 ]
}

 The dataset includes 15500 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019664-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11717194
title: Emotion Video Dataset (700 Speakers, Voice)
DOI: 10.15468/dl.5kwa3j
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcharinus leucas (Valenciennes, 1839)"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019666-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvyjvm
title: Occurrence Download

description: A dataset containing 367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observation.org, Nature data from around the World",
 "Geometry POLYGON((-69.23821 11.93933,-68.13755 11.93933,-68.13755 12.43738,-69.23821 12.43738,-69.23821 11.93933))",
 "HasGeospatialIssue is false",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 367 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019665-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zppvhw
title: Occurrence Download

description: A dataset containing 1254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ramiflora Maxim.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1254 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019667-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/97p3-b060
title: "Accuracy and Stability Assessment of Resistive-Inductive Virtual Impedances for Grid-Forming Converters with LCL Filters"

description: "Timeseries data of impedance measurement, created by dSPACE ControlDesk, stored in MATLAB format"
DOI: 10.15468/dl.pp8tys
title: Occurrence Download

description: A dataset containing 1412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (2434724, Spermophilus citellus (Linnaeus, 1766))"
 ]
}

 The dataset includes 1412 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019668-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28945163
title: Dataset for Optimizing Urban Agriculture in Kermanshah, Iran: Location, Technology, and Workforce Allocation

description: This dataset supports the study on optimizing urban agriculture in Kermanshah, Iran, using ANP-TOPSIS and mixed-integer programming models. It includes parameters for two crops (tomatoes and cauliflower) across eight urban areas, covering product demand (kg), manpower hours (hours/hectare), machine working hours (hours/hectare), water usage (liters), land costs (USD), taxes (USD), and cultivation productivity (kg/hectare). Data were collected from local agricultural reports and expert consultations in Kermanshah in 2020-2023. The Excel file contains multiple tables, each labeled with parameters such as 'p1' (tomatoes) and 'p2' (cauliflower). Units are specified in the file where applicable. The dataset can be analyzed using optimization software like MATLAB or GAMS to replicate the study’s results (e.g., farm sizes of 8.3 and 6.3 hectares, NPV of $3.52M). For sensitive workforce data, only anonymized values are provided.
DOI: 10.6084/m9.figshare.28942299
title: Ancient hybridization underlies tuberization and radiation of the potato lineage

description: Interspecific hybridization may trigger species radiation by creating novel allele combinations and new traits. Cultivated potato and its 107 wild species from the Petota lineage all share the distinctive tuber organ, but the underlying mechanisms for tuberization and extensive species diversification remain unclear. Through analyses of 128 genomes, including 58 novel haplotype-resolved genomes, we revealed that Petota is of ancient hybrid origin, with all members exhibiting stable mixed genomic ancestry, derived from the Etuberosum and Tomato lineages ca. 8–9 million years ago. Our functional experiments further validated the crucial roles of parental genes in tuberization, indicating that interspecific hybridization is a key driver of this innovative trait. This trait, along with the sorting and recombination of hybridization-derived polymorphisms, likely triggered the explosive species diversification of Petota by enabling the occupation of broader ecological niches. These findings highlight how ancient hybridization fosters key innovation and drives subsequent species radiation.
DOI: 10.6084/m9.figshare.28942299.v1
title: Ancient hybridization underlies tuberization and radiation of the potato lineage

description: Interspecific hybridization may trigger species radiation by creating novel allele combinations and new traits. Cultivated potato and its 107 wild species from the Petota lineage all share the distinctive tuber organ, but the underlying mechanisms for tuberization and extensive species diversification remain unclear. Through analyses of 128 genomes, including 58 novel haplotype-resolved genomes, we revealed that Petota is of ancient hybrid origin, with all members exhibiting stable mixed genomic ancestry, derived from the Etuberosum and Tomato lineages ca. 8–9 million years ago. Our functional experiments further validated the crucial roles of parental genes in tuberization, indicating that interspecific hybridization is a key driver of this innovative trait. This trait, along with the sorting and recombination of hybridization-derived polymorphisms, likely triggered the explosive species diversification of Petota by enabling the occupation of broader ecological niches. These findings highlight how ancient hybridization fosters key innovation and drives subsequent species radiation.