cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12768842.v1
title: Additional file 3 of Tuberculosis active case-finding interventions and approaches for prisoners in sub-Saharan Africa: a systematic scoping review

description: Additional file 3: Supplementary file 3: Quality appraisal tool
DOI: 10.6084/m9.figshare.12768835
title: Additional file 1 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

description: Additional file 1. Cuffdiff2 differential expression data. Tabs are for each injury condition and time point vs. their relevant controls (N = 3 biological replicates, each). Tabs PW1–3) Tadpole spinal cord injury (SCI) hindbrain vs. age-matched, unoperated control hindbrain at 3 days, 1 week, and 3 weeks, respectively; PW4–6) Juvenile frog SCI hindbrain at 3 days, 1 week, and 3 weeks vs. unoperated control hindbrain; PW7–9) juvenile frog optic nerve crush (ONC) eye vs. the contralateral unoperated eye at 3 days, 11 days, and 3 weeks, respectively. Abbreviations: chr, chromosome; cntrl, control; FPKM, fragments per kilobase of transcript per million mapped reads; ONC, optic nerve crush; p, the calculated probability for a single given gene that the observed difference represented no change in expression (i.e., log2(fold change) = 0); q, false discovery rate-adjusted (FDR) p-value [14]; significant, “yes” if q
DOI: 10.6084/m9.figshare.12768835.v1
title: Additional file 1 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

description: Additional file 1. Cuffdiff2 differential expression data. Tabs are for each injury condition and time point vs. their relevant controls (N = 3 biological replicates, each). Tabs PW1–3) Tadpole spinal cord injury (SCI) hindbrain vs. age-matched, unoperated control hindbrain at 3 days, 1 week, and 3 weeks, respectively; PW4–6) Juvenile frog SCI hindbrain at 3 days, 1 week, and 3 weeks vs. unoperated control hindbrain; PW7–9) juvenile frog optic nerve crush (ONC) eye vs. the contralateral unoperated eye at 3 days, 11 days, and 3 weeks, respectively. Abbreviations: chr, chromosome; cntrl, control; FPKM, fragments per kilobase of transcript per million mapped reads; ONC, optic nerve crush; p, the calculated probability for a single given gene that the observed difference represented no change in expression (i.e., log2(fold change) = 0); q, false discovery rate-adjusted (FDR) p-value [14]; significant, “yes” if q
DOI: 10.6084/m9.figshare.12768772
title: Additional file 4 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 4: Supplementary Table S4. Polar bear and brown bear sample locality and mapping information.
DOI: 10.6084/m9.figshare.12859799.v1
title: 2019中国渔业声学第十届研讨会会议通知.pdf

description: meeting
DOI: 10.6084/m9.figshare.12768766
title: Additional file 2 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 2: Supplementary Table S2. Table including all relevant information at the genes of interest, including nucleotide information, gene location, amino acid information, and allele distributions of the non-synonymous differences between polar bears and brown bears.
DOI: 10.6084/m9.figshare.12768769
title: Additional file 3 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 3: Supplementary Table S3. Table including all relevant information at the genes of interest, including nucleotide information, gene location, amino acid information, allele distributions, and predictions of amino acid changes in the sites in which the alternative allele is also found in the giant panda. Red coloured cells indicate sites in which amino acid changes may have a functional influence according to at least one of the three tests: Polyphen-2, SIFT, or PROVEAN. D/D represents homozygous derived, D/A represents heterozygous derived and ancestral, A/A represents homozygous ancestral.
DOI: 10.6084/m9.figshare.12768772.v1
title: Additional file 4 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 4: Supplementary Table S4. Polar bear and brown bear sample locality and mapping information.
DOI: 10.6084/m9.figshare.12768761
title: Additional file 1 of A simple approach for quantifying node centrality in signed and directed social networks

description: Additional file 1. The Hungarian school classroom data are given in the form of eight Excel files, each for a particular class. Those eight classes are identified as classes “a”, “b”, “c”, “d”, “e”, “f”, “g” and “h”. For instance, data for class “a” are in the file a.xlsx. Each file has several Excel spreadsheets. A spreadsheet with a label “YYMM” is the social network data collected on month MM in year 20YY, and the data is organized in three columns: the first and the second columns, namely “nominator” and “nominee”, contain the identifiers for the students; while the last column, namely “relation”, contains whether the “nominator” nominates the “nominee” as a friend (coded “1”) or as an enemy (coded “-1”). A spreadsheet with a label “gen” contains the gender information for each student, and it has two columns: the “id” column contains the identifier for a particular student whose gender is recorded in the column “gender” (coded “0” for girls and “1” for boys). A spreadsheet with a label “feel” contains the feeling score for each student when the social network data were collected, and it contains the following columns: the column “id” is the identifies for the students, and the column “feelYYMM” contains the feeling scores for students when the social network data was collected on month MM in year 20YY. The feeling score is a rough measurement of how they feel in the school ranging on an integer scale from very bad (1) to very good (5). Furthermore, a feeling score of 7 means that the corresponding student was not in the class on the day when data were collected; while a score of 9 means that the student was present in the class but didn’t give a feeling score. A brief summary of each social network data can be found in the file named “Brief_Summary.xlsx”. It summarises for each social network, the number of students, the number of friend-nominating ties, the number of enemy-nominating ties, the degree (i.e. the sum of the number of friend-nominating ties and the number of enemy-nominating ties), and their means.
DOI: 10.6084/m9.figshare.12768766.v1
title: Additional file 2 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 2: Supplementary Table S2. Table including all relevant information at the genes of interest, including nucleotide information, gene location, amino acid information, and allele distributions of the non-synonymous differences between polar bears and brown bears.
DOI: 10.6084/m9.figshare.12768769.v1
title: Additional file 3 of Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

description: Additional file 3: Supplementary Table S3. Table including all relevant information at the genes of interest, including nucleotide information, gene location, amino acid information, allele distributions, and predictions of amino acid changes in the sites in which the alternative allele is also found in the giant panda. Red coloured cells indicate sites in which amino acid changes may have a functional influence according to at least one of the three tests: Polyphen-2, SIFT, or PROVEAN. D/D represents homozygous derived, D/A represents heterozygous derived and ancestral, A/A represents homozygous ancestral.
DOI: 10.6084/m9.figshare.12768761.v1
title: Additional file 1 of A simple approach for quantifying node centrality in signed and directed social networks

description: Additional file 1. The Hungarian school classroom data are given in the form of eight Excel files, each for a particular class. Those eight classes are identified as classes “a”, “b”, “c”, “d”, “e”, “f”, “g” and “h”. For instance, data for class “a” are in the file a.xlsx. Each file has several Excel spreadsheets. A spreadsheet with a label “YYMM” is the social network data collected on month MM in year 20YY, and the data is organized in three columns: the first and the second columns, namely “nominator” and “nominee”, contain the identifiers for the students; while the last column, namely “relation”, contains whether the “nominator” nominates the “nominee” as a friend (coded “1”) or as an enemy (coded “-1”). A spreadsheet with a label “gen” contains the gender information for each student, and it has two columns: the “id” column contains the identifier for a particular student whose gender is recorded in the column “gender” (coded “0” for girls and “1” for boys). A spreadsheet with a label “feel” contains the feeling score for each student when the social network data were collected, and it contains the following columns: the column “id” is the identifies for the students, and the column “feelYYMM” contains the feeling scores for students when the social network data was collected on month MM in year 20YY. The feeling score is a rough measurement of how they feel in the school ranging on an integer scale from very bad (1) to very good (5). Furthermore, a feeling score of 7 means that the corresponding student was not in the class on the day when data were collected; while a score of 9 means that the student was present in the class but didn’t give a feeling score. A brief summary of each social network data can be found in the file named “Brief_Summary.xlsx”. It summarises for each social network, the number of students, the number of friend-nominating ties, the number of enemy-nominating ties, the degree (i.e. the sum of the number of friend-nominating ties and the number of enemy-nominating ties), and their means.
DOI: 10.5281/zenodo.3999198
title: An investigation into the deterrent nature of salicin in specialist moths

description: File containing all the photographs used in this bachelor project as well as r code used to make the figures
DOI: 10.5281/zenodo.3999197
title: An investigation into the deterrent nature of salicin in specialist moths

description: File containing all the photographs used in this bachelor project as well as r code used to make the figures
DOI: 10.6084/m9.figshare.12768629
title: Additional file 4 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 4: Supplementary Table 4. Tabular survey of validation results to determine DNA panel sequencing performance. SNPs and InDels were validated with direct Sanger sequencing, 1p/19q codeletions with microsatellite PCR analysis, and homozygous deletion of CDKN2A as well as highcopy amplification of EGFR with target specific quantitative PCR. Medulloblastoma subgroups were validated by comparison to immunohistochemically determined subgroups with antibodies against ß-Catenin, Yap1, p75-NGFR and OTX2 [10]. InDel: small insertion/deletion, nd: not determined, RET: retention, SNP: single nucleotide variant, WT: wildtype.
DOI: 10.6084/m9.figshare.12768629.v1
title: Additional file 4 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 4: Supplementary Table 4. Tabular survey of validation results to determine DNA panel sequencing performance. SNPs and InDels were validated with direct Sanger sequencing, 1p/19q codeletions with microsatellite PCR analysis, and homozygous deletion of CDKN2A as well as highcopy amplification of EGFR with target specific quantitative PCR. Medulloblastoma subgroups were validated by comparison to immunohistochemically determined subgroups with antibodies against ß-Catenin, Yap1, p75-NGFR and OTX2 [10]. InDel: small insertion/deletion, nd: not determined, RET: retention, SNP: single nucleotide variant, WT: wildtype.
DOI: 10.6084/m9.figshare.12768623
title: Additional file 2 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 2: Supplementary Table 2. Oligonucleotides used for validation purposes.
DOI: 10.6084/m9.figshare.12768626
title: Additional file 3 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 3: Supplementary Table 3. Tabular survey of all panel sequencing results. Validation cases and clinically requested cases are indicated, also the 17 cases that were used for intensified quality control (QC cohort). HOMDEL: homozygous loss, HIGHCOPY: highcopy amplification, TRU: truncating variation probably leading to a loss of function, MUT: somatic missense variations, LOH: loss of heterozygosity, DEL: deletion, AMP: amplification, MUTGER: germline SNP with minor allele frequency European (non-Finnish)
DOI: 10.6084/m9.figshare.12768620
title: Additional file 1 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 1: Supplementary Table 1. Genes and chromosomal regions included in the targeted DNA panel. Most genes were covered using the CDS, for some well-known mutations only hotspot regions were targeted with SNP/small InDel calling being performed (SNP). Chromosomal regions were covered with commonly heterozygous SNPs for LOH and CNV analyzes. Genes included in LOH and CNV analysis were additionally covered with commonly heterozygous SNPs in intronic regions. Variations of genes and chromosomal regions may either be characteristic for a specific tumor entity (diagnostic), indicate actionable mutations for targeted therapies (targetable) and/or drug resistance (resistance) or be associated with impaired DDR. CDS: complete coding sequence, CNV: copy number variations, DDR: DNA damage response, LOH: loss of heterozygosity, SNP: single nucleotide variant.
DOI: 10.6084/m9.figshare.12768623.v1
title: Additional file 2 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 2: Supplementary Table 2. Oligonucleotides used for validation purposes.
DOI: 10.6084/m9.figshare.12768626.v1
title: Additional file 3 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 3: Supplementary Table 3. Tabular survey of all panel sequencing results. Validation cases and clinically requested cases are indicated, also the 17 cases that were used for intensified quality control (QC cohort). HOMDEL: homozygous loss, HIGHCOPY: highcopy amplification, TRU: truncating variation probably leading to a loss of function, MUT: somatic missense variations, LOH: loss of heterozygosity, DEL: deletion, AMP: amplification, MUTGER: germline SNP with minor allele frequency European (non-Finnish)
DOI: 10.6084/m9.figshare.12768620.v1
title: Additional file 1 of A comprehensive DNA panel next generation sequencing approach supporting diagnostics and therapy prediction in neurooncology

description: Additional file 1: Supplementary Table 1. Genes and chromosomal regions included in the targeted DNA panel. Most genes were covered using the CDS, for some well-known mutations only hotspot regions were targeted with SNP/small InDel calling being performed (SNP). Chromosomal regions were covered with commonly heterozygous SNPs for LOH and CNV analyzes. Genes included in LOH and CNV analysis were additionally covered with commonly heterozygous SNPs in intronic regions. Variations of genes and chromosomal regions may either be characteristic for a specific tumor entity (diagnostic), indicate actionable mutations for targeted therapies (targetable) and/or drug resistance (resistance) or be associated with impaired DDR. CDS: complete coding sequence, CNV: copy number variations, DDR: DNA damage response, LOH: loss of heterozygosity, SNP: single nucleotide variant.
DOI: 10.6084/m9.figshare.12768607
title: Additional file 3 of Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data

description: Additional file 3: Supplementary Table 8. The genotype-phenotype dataset generated with targeted next-generation sequencing.
DOI: 10.6084/m9.figshare.12768601
title: Additional file 2 of Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data

description: Additional file 2: Supplementary Table 7. The genotype-phenotype dataset generated with whole-exome sequencing.
DOI: 10.6084/m9.figshare.12768607.v1
title: Additional file 3 of Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data

description: Additional file 3: Supplementary Table 8. The genotype-phenotype dataset generated with targeted next-generation sequencing.
DOI: 10.6084/m9.figshare.12859775
title: Supplementary Material for: Risk of Dementia in Diabetic Patients with Hyperglycemic Crisis: A Nationwide Taiwanese Population-Based Cohort Study

description: <b><i>Background:</i></b> A hyperglycemic crisis episode (HCE) signifies poor control of diabetes and may increase the risk of dementia via microvascular and macrovascular injuries. <b><i>Objectives:</i></b> We conducted this study to clarify this issue, which remains unclear. <b><i>Methods:</i></b> Using the Taiwan National Health Insurance Database, we identified 9,466 diabetic patients with HCE and the identical number of diabetic patients without HCE who were matched by age and sex for this nationwide population-based cohort study. The risk of dementia was compared between the 2 cohorts by following up until 2014. Investigation of independent predictors of dementia was also done. <b><i>Results:</i></b> In the overall analysis, the risk of dementia between the 2 cohorts was not different. However, stratified analyses showed that patients with HCE had a higher risk of subsequent dementia in the age subgroup of 45−54 and 55–64 years (adjusted odds ratio [AOR]: 2.4, 95% confidence interval [CI]: 1.6–3.6, and AOR: 1.2, 95% CI: 1.0–1.5, respectively). In the overall analysis, older age, female sex, ≥3 HCEs, hypertension, hyperlipidemia, depression, cerebrovascular disease, Parkinson’s disease, and head injury were independent predictors. <b><i>Conclusions:</i></b> HCE increased the risk of dementia in diabetic patients aged 45–64 years. Dementia was predicted by ≥3 HCEs. Prevention of recurrent HCE, control of comorbidities, and close follow-up of cognitive decline and dementia are suggested in patients with HCE.
DOI: 10.6084/m9.figshare.12768601.v1
title: Additional file 2 of Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data

description: Additional file 2: Supplementary Table 7. The genotype-phenotype dataset generated with whole-exome sequencing.
DOI: 10.6084/m9.figshare.12768595
title: Additional file 1 of Refuting misconceptions in medical physiology

description: Additional file 1. Appendix A, Appendix B; A. Multi-tier question with 3-tiers: Yes/No, Explanation, and Confidence, B. Refutation text with a refutation element, correct answer, and explanation.
DOI: 10.6084/m9.figshare.12859775.v1
title: Supplementary Material for: Risk of Dementia in Diabetic Patients with Hyperglycemic Crisis: A Nationwide Taiwanese Population-Based Cohort Study

description: <b><i>Background:</i></b> A hyperglycemic crisis episode (HCE) signifies poor control of diabetes and may increase the risk of dementia via microvascular and macrovascular injuries. <b><i>Objectives:</i></b> We conducted this study to clarify this issue, which remains unclear. <b><i>Methods:</i></b> Using the Taiwan National Health Insurance Database, we identified 9,466 diabetic patients with HCE and the identical number of diabetic patients without HCE who were matched by age and sex for this nationwide population-based cohort study. The risk of dementia was compared between the 2 cohorts by following up until 2014. Investigation of independent predictors of dementia was also done. <b><i>Results:</i></b> In the overall analysis, the risk of dementia between the 2 cohorts was not different. However, stratified analyses showed that patients with HCE had a higher risk of subsequent dementia in the age subgroup of 45−54 and 55–64 years (adjusted odds ratio [AOR]: 2.4, 95% confidence interval [CI]: 1.6–3.6, and AOR: 1.2, 95% CI: 1.0–1.5, respectively). In the overall analysis, older age, female sex, ≥3 HCEs, hypertension, hyperlipidemia, depression, cerebrovascular disease, Parkinson’s disease, and head injury were independent predictors. <b><i>Conclusions:</i></b> HCE increased the risk of dementia in diabetic patients aged 45–64 years. Dementia was predicted by ≥3 HCEs. Prevention of recurrent HCE, control of comorbidities, and close follow-up of cognitive decline and dementia are suggested in patients with HCE.
DOI: 10.6084/m9.figshare.12768595.v1
title: Additional file 1 of Refuting misconceptions in medical physiology

description: Additional file 1. Appendix A, Appendix B; A. Multi-tier question with 3-tiers: Yes/No, Explanation, and Confidence, B. Refutation text with a refutation element, correct answer, and explanation.
DOI: 10.6084/m9.figshare.12768566
title: Additional file 2 of Depression does not predict clinical outcome of Chinese peritoneal Dialysis patients after adjusting for the degree of frailty

description: Additional file 2. All raw data of our present study.
DOI: 10.6084/m9.figshare.12768566.v1
title: Additional file 2 of Depression does not predict clinical outcome of Chinese peritoneal Dialysis patients after adjusting for the degree of frailty

description: Additional file 2. All raw data of our present study.