cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17031/1678
title: 2020 DAERA (The Department of Agriculture, Environment and Rural Affairs) Fish Estuary-Association Scores (FEAS)
title: FEAS Database

description: The dataset comprises a fish estuary-association score (FEAS) system that numerically expresses the degree or level of estuarine association for each species. The FEAS ranges between 1.0 and 5.0 where fish species with a score close to 1.0 are regarded as freshwater species with little association or dependence on estuarine environments (freshwater straggler species) while those species with a score close to 5.0 are marine species that are typically not associated or dependent on estuaries (marine straggler species). Fish species with a FEAS close to 3.0 are dependent on estuaries for all or part of their life cycle. Estuary-use functional guild categories for each species is also provided. These consist of marine stragglers (MS), marine migrants (MM), estuarine species (ES), diadromous species (DI), freshwater migrants (FM), and freshwater stragglers (FS). Diadromous species were further sub-divided into anadromous species (DI(AN)), catadromous species (DI(CA)), and amphidromous species (DI(AM)).
DOI: 10.17864/1947.186
title: Lake Surface Water Temperature ARC-Lake v3 (1995-2012)

description: The dataset consists of satellite observations of Lake Surface Water Temperature (LSWT) and Lake Ice Cover (LIC) for major lakes, globally, from 1995 to 2012. The dataset was generated within the European Space Agency (ESA) ‘ATSR Reprocessing for Climate: Lake Surface Water Temperature & Ice Cover’ (ARC-Lake) project in 2014 and data were/are available for downloading at www.laketemp.net. The project aimed to use the exceptional radiometric qualities and dual-view scanning capability of the ATSRs to derive observations of LSWT contained in this dataset. This can be considered to be a major contribution to monitoring of lakes within the Global Climate Observing System, because the ATSRs are in principle capable of being a highly accurate source of information on LSWTs on a systematic global basis, in comparison to in situ measurements which may not be avaialable. The method is based on surface water temperature retrieval from the thermal channels using the following instruments: ATRS2 on the ERS-2 platform and AATSR on the Envisat platform. LSWT and LIC observations have potential environmental and meteorological applications for inland water management and numerical weather prediction (NWP). They also offer the basis of a long term record of the physical state of lakes.
DOI: 10.18462/iir.thermag.2016.0079
title: New concept for magnetocaloric heat pumps based on thermal diodes and latent heat transfer.

description: Since the beginning of the last decade, several dozens of magnetocaloric heat pump systems have been built by different groups. Basically all of these systems are based on the Active Magnetic Regenerator (AMR) concept, where a heat transfer fluid is actively pumped through a bed of magnetocaloric material in order to transfer thermal energy to hot and cold side heat exchangers. Hereby several powerful systems were built, generating large temperature spans of more than 50 K while others provided large cooling capacities of several kW. However, up to now no system has been built which provides large temperature span and cooling capacity while having a coefficient-of-performance (COP) better than standard compressor-based cooling systems [1]. In this work a new concept and first experimental data of a magnetocaloric heat pump will be presented. In this concept, the heat transfer is realized by the combination of magnetocaloric material with thermal diodes which are based on latent heat transfer. Similar to thermosyphons, thermal energy is efficiently transported by condensation and evaporation processes leading to heat transfer rates which are several orders of magnitude larger than in conventional systems. At the same time, no additional pumps are required for transporting the heat exchange fluids, enabling systems which large temperature spans and competitive COPs.
DOI: 10.25500/edata.bham.00000566
title: NOx interference data
DOI: 10.34740/kaggle/dsv/2965251
title: Vegetable Image Dataset
DOI: 10.5066/p1rfru9t
title: Elevation change in the watershed of Rito de los Frijoles, Bandelier National Monument, New Mexico from 2010 to 2016

description: Intense precipitation following the June 2011 Las Conchas Fire in the Jemez Mountains, New Mexico, led to widespread debris flows in the watershed of Rito de los Frijoles in Bandelier National Monument. Sediment eroded by these debris flows was transported along Rito de los Frijoles during floods in 2011 and 2013. This dataset contains two tabular files and one raster digital file. The tabular digital file Frijoles_Long_Profiles.csv contains longitudinal profiles of Rito de los Frijoles from 2010, before the fire, and 2016, after the debris flows and floods. These longitudinal profiles were derived from digital elevation models (DEMs) based on airborne lidar and present the elevation of the thalweg (deepest point in a channel) every 10 m along the creek. This file also includes slope profiles derived from the longitudinal profiles. The tabular digital file Frijoles_El_Vs_Time.csv gives the thalweg elevation at a single point at 9 different times. The point is the location of USGS Stream Gage 08313300, Rito de los Frijoles near Los Alamos, NM, also known as the Upper Crossing Gage, and times are between July 27, 2012 and July 15, 2016. Elevations are derived from a rectified series of ground-level photographs of the gaging station. The raster digital file DoD_2016_2010.tif is a DEM of difference showing change in elevation between 2010 and 2016. This file was created by subtracting DEMs created from lidar data collected in 2010 and 2016.
DOI: 10.5281/zenodo.11091319
title: European CFP EGMS Vertical Land Motion

description: This dataset contains the estimates of EGMS-derived vertical land motion in European Coastal Flood Plain.
DOI: 10.5281/zenodo.13640490
title: MoMA Collection - Automatic Update

description: Temporary Description
DOI: 10.5281/zenodo.13640491
title: MoMA Collection - Automatic Update

description: Temporary Description
DOI: 10.5517/ccdc.csd.cc1mchr7
title: CCDC 1500609: Experimental Crystal Structure Determination

description: Related Article: A.C.Keates, B. Shirley|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25434817.v1
title: Ascending and descending LOS displacements

description: Ascending and descending LOS displacements of the Christmas Eve eruption at Mount Etna using both the ascending and descending interferograms acquired from the Sentinel-1 satellite.
DOI: 10.6084/m9.figshare.26230430
title: The 8 Staphylococcus aureus strains reference list

description: PubMed search results (07/01/2024)
DOI: 10.6084/m9.figshare.26763586
title: Supplementary Material for: Multiphasic Acute Disseminated Encephalomyelitis (MDEM) with a Temporal Gap of 26 years; a Case Report with Novel Presentation

description: Acute Disseminated Encephalomyelitis (ADEM) is an acute autoimmune demyelinating disease of the central nervous system that typically follows an acute viral infection or post-vaccination. It is more common in children than in adults and is characterized by widespread demyelination of the white matter of the brain and spinal cord. ADEM typically presents as a monophasic illness. Multiphasic ADEM has been an emerging topic with case reports highlighting the importance of the need for further investigation and literature on this topic. Multiphasic ADEM in adults is a rare presentation with an atypical course that can cause a delay in diagnosis leading to disability in patients. Multiple case reports have shown the presence of Multiphasic ADEM without an established cause, emphasizing the importance of additional insight and data in this context. This is a unique case of Multiphasic ADEM in a 59-year-old male with a temporal gap of 26 years.
DOI: 10.15468/dl.ff776e
title: Occurrence Download

description: A dataset containing 14075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum mauritianum Scop.",
 "Year 2014-2024"
 ]
}

 The dataset includes 14075 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114614-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i22390359v44p53
title: English language entry requirements in EMI degree programs at Bachelor level in Italy

description: The internationalization of education at university level is rapidly leading to the proliferation of English Medium Instruction (EMI) programmes in many educational contexts around the globe. This study deals with the entry requirements for prospective candidates for accessing EMI degree programmes at bachelor level (BA) in Italian universities, with a focus on English language proficiency. So far, this particular aspect has received little attention, especially from a comparative perspective among Italian universities. However, language competence is crucial to learn effectively in an EMI context. This paper illustrates the results of a survey involving eighteen Italian universities which offer such programmes at bachelor level. To identify the English language requirements, the relevant webpages of the institutions have been explored, starting from the Universitaly website - a platform which presents an overview of the Italian universities providing EMI programmes. All the undergraduate degree courses delivered in the English-only formula have been considered. The results show that not only are the institutional webpages and their admission requirements sections quite different from one another but, most importantly, the required level of English proficiency varies considerably across universities and degree courses, ranging from B1 to C1 (according to the CEFR descriptors). In addition, programmes also differ in terms of how students' English proficiency is verified. This study, therefore, suggests that, at least as far as entry language requirements are concerned, EMI in Italy is far from being a homogenous phenomenon and that local practices tend to shape this educational policy.
DOI: 10.15468/ewm0v1
title: Global Register of Introduced and Invasive Species - Lithuania

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.15485/2336869
title: Seedling nitrogen uptake and rhizodeposition between mycorrhizal types

description: Tree mycorrhizal associations are associated with patterns in N cycling and soil organic matter (SOM) storage, however, we still lack a mechanistic understanding of what tree and fungal traits drive these patterns and how they will respond to global changes in soil N availability. To address this knowledge gap, we investigated how arbuscular mycorrhizal (AM)- and ectomycorrhizal (EcM)-associated seedlings alter rhizodeposition in response to increased inorganic N acquisition. Specifically, we conducted this greenhouse experiment in a sealed labeling chamber with an enriched 13Carbon atmosphere and 15Nitrogen enriched fertilizer over the course of five months from April 2021 - August 2021. To include the variability across tree species, we grew eight species of seedlings belonging to eight families that were either arbuscular (Acer rubrum, Nyssa sylvatica, Thuja occidentalis, and Prunus seritina) or ectomycorrhizal-associated (Quercus rubra, Tilia americana, Pinus strobus, and Betula lenta). We measured rhizodeposition (mg 13C), plant N uptake from fertilizer (mg N), net soil carbon, and the abundance of mycorrhizal fungi (ITS sequencing and qPCR). We also characterized fungal (ITS2) and bacterial (16S) soil communities.The data from this project are ".csv" files that can up downloaded into a folder, and then run in the associated R markdown scripts after changing the source folder location at the top of the script. These data include raw outputs and processed files (using the R markdown files) for seedling growth and biomass, 15N content, soil 13C content, raw reads and processed file versions for fungal and bacterial ASVS, and a final summary file used for modeling. R software is needed to run these data, and the packages needed are listed at the top of the R markdown file.
DOI: 10.18170/dvn/by80nz
title: Source-to-sink analysis in the Mesozoic SW Junggar Basin, Central Asia: Evidence from detrital garnet and tourmaline geochemistry

description: The data from the article "Source-to-sink analysis in the Mesozoic SW Junggar Basin, Central Asia: Evidence from detrital garnet and tourmaline geochemistry "
DOI: 10.24432/c5cc9h
title: Anuran Calls (MFCCs)
DOI: 10.3886/e111745v1
title: Replication Data for: "Demand Volatility, Adjustment Costs, and Productivity: An Examination of Capacity Utilization for Hotels and Airlines"

description: Measures of productivity reveal large differences across producers even within narrowly defined industries. Traditional measures of productivity, however, will associate differences in demand volatility to differences in productivity when adjusting factors of production is costly. I document this effect by comparing the influence of demand volatility on capacity utilization in a high (hotels) and low (airlines) adjustment cost industry. Differences in annual demand volatility explain a large share of the variation in occupancy rates of hotels at the metro area-segment-year level. In contrast, differences in annual demand volatility have no effect on load factors of airlines at the destination-airline-year level.
description: Flights and hotels in major U.S. cities over the period 2003--2011. .
DOI: 10.5066/p92uyecv
title: Annual low flow, climate and watershed properties for 325 USGS gages in and near the Delaware River Basin

description: This dataset contains annual metrics quantifying low streamflows, climate, topography, land cover and geology for 325 USGS GAGES-2 watersheds within the Delaware River Basin boundary or with watershed centroids within a 25-mile buffer of the Delaware River Basin boundary.
DOI: 10.5281/zenodo.10023360
title: Detailed mass spectrometry instrument method text description, used to produce proteomic data files for PKZILLA manuscript

description: The detailed mass spectrometry method used to produce data files:P1A_techrep1_DG19854.raw , MD5: cb94e4c68dc8739f80e20986803b20c2 , SHA1: 289ab06f64b5262c95d08131fa8f4fcd9fef406aP1A_techrep2_DG19855.raw: MD5: 5cda6208209f49d6c324af1aef185952 , SHA1: b8e105d4f146a8bce0eae223f9e655d1168fc999P1A_techrep3_DG19856.raw: MD5: 9b6425a92cb8e66f9b5daef5ca83a06c , SHA1: e1cc14a880bade836389d6cd50a2807993534ad6
Produced proteomic data are available via ProteomeXchange with identifier PXD044632. See: https://doi.org/10.6019/PXD044632
Derived from: Filename: P1A_techrep1_DG19854.raw , MD5: cb94e4c68dc8739f80e20986803b20c2 , SHA1: 289ab06f64b5262c95d08131fa8f4fcd9fef406a
Per the Sample Information created via the Thermo Fisher Scientific FreeStyle 1.8 SP2 QF1 Mass spectrometry analysis software, the used instrument method name was "113_min_Standard_Sway3.meth"- P1A_techrep2_DG19855.raw: MD5: 5cda6208209f49d6c324af1aef185952 \, SHA1: b8e105d4f146a8bce0eae223f9e655d1168fc999- P1A_techrep3_DG19856.raw: MD5: 9b6425a92cb8e66f9b5daef5ca83a06c \, SHA1: e1cc14a880bade836389d6cd50a2807993534ad6 \,also appeared to use the same method as P1A_techrep1_DG19854.raw.
Method summary created via the Thermo Fisher Scientific FreeStyle 1.8 SP2 QF1 Mass spectrometry analysis software: Reports->Instrument Method :
Due to a seeming inability to select, copy paste, or print this Method Summary text to PDF, & have the text be maintained in an editable format (i.e. not rasterized to an image), the text was exported via screenshotting from the FreeStyle interface to PNG, followed by optical character using PDF OCR X Enterprise Editions (macOS; v3.0.35), and the text manually combined, lightly edited for OCR misrecognition, & attempted to match the indentation of the source documents using BBEdit (macOS; v14.6.6). There may be errors due to this manual transcription process.
DOI: 10.5281/zenodo.10023426
title: Kallisto v0.50.0 expression quantification of day and night phase rRNA depletion RNA-Seq data from P. parvum strain 12B1

description: Kallisto v0.50.0 was used to quantify the following libraries: 
SRR23517916 (Night phase; https://trace.ncbi.nlm.nih.gov/Traces?run=SRR23517916) 
SRR23517917 (Day phase; https://trace.ncbi.nlm.nih.gov/Traces?run=SRR23517917)
Against this in silico predicted transcriptome: 12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.mRNA.fa (seqkit sum: seqkit.v0.1_DLS_k0_559abfafd14eacd04de9c4d42af781a0) (Available from: https://doi.org/10.5281/zenodo.10023330)
SRR23517916 selected results: 
target_id length eff_length est_counts tpm 
PKZILLA-1 136088 135896 37629.1 0.713157 
PKZILLA-2 92413 92220.9 59960.9 1.67459 
PKZILLA-3 73850 73657.9 25959 0.907688
SRR23517917 selected results: 
target_id length eff_length est_counts tpm 
PKZILLA-1 136088 135895 66303.4 1.11135 
PKZILLA-2 92413 92220.3 98095.6 2.42293 
PKZILLA-3 73850 73657.3 1058 0.0327181
DOI: 10.5281/zenodo.10023441
title: SearchGUI proteomic search analysis for PKZILLAs in P. parvum 12B1

description: Exported .mzID (.mzIdentML) and .xlsx files for SearchGUI proteomic search engine analysis. See the "Materials and Methods" section of the linked pre-printed or peer-reviewed manuscript for full description.
The .mzID file is also uploaded via ProteomeXchange with identifier PXD044632. https://doi.org/10.6019/PXD044632
DOI: 10.5281/zenodo.10309063
title: Hotspots of PKS coding evidence within the Prymnesium parvum 12B1 v1.1 genome assembly

description: Input, intermediate, and results files for liftover of PKS hotspot analysis onto the P. parvum 12B1 v1.1 genome. 
See "Definition of PKS hotspots within the 12B1 genome" in the manuscript materials and methods for further details.
DOI: 10.5281/zenodo.10529574
title: Hybridized, Physics-Based Melt Detection for 13 Antarctic sites v2

description: An (updated) dataset of 13 Antarctic sites with microwave grain size (exponential correlation lengths/p_exp) as well as melt day detection using the Hybrid Method. The Hybrid Method combines the Community Firn Model and the Snow Microwave Radiative Transfer model with AMSR-2 to detect melt days.
DOI: 10.5281/zenodo.10822721
title: Bow echo detection and segmentation

description: This is a code and data repository for a CNN-based bow echo detector meant for use on NEXRAD composite reflectivity mosaics discussed in:"A derecho climatology (2004-2021) in the United States based on machine learning identification of bow echoes" by Jianfeng Li, Andrew Geiss, Zhe Feng, L. Ruby Leung, Yun Qian, and Wenjun Cui

The repository contains the following items:

initial_training_dataset.zip -- The dataset used to train the initial version of the segmentation model. It contains 500 positive samples with hand-drawn masks and 3,350 negative samples with no masks. The samples are stored as .png files with pixel values between 0-255 linearly mapped from dBZ values between 0-50. The negative samples are stored as single-channel images while the positive samples are RGB images with the reflectivity data stored in the blue channel and the corresponding masks stored in the red channel.

pseudo_labeled_training_dataset.zip -- The larger training set used for the final version of the CNN with 1,199 masked positive cases and 1,978 negative cases. These are also stored as .png files. Here, the masks have been produced by a CNN and reviewed for accuracy by a human.

testing_dataset.zip -- 217 plots of testing cases. These are radar images of MCS's from 2010 that may or may not contain bow echoes.

test_labels.csv -- A collection of human and CNN labels for the 217 test cases.

conus_bow_echoes.zip -- NetCDF files containing CNN segmentation results for reflectivity mosaics from 2004-2021. Bow echo masks are stored as signed integers. 0 = No bow echo, -1 = bow echo not associated with a tracked MCS, >0 bow echo associated with an MCS where each unique MCS in a year is assigned a unique integer based on PyFLEXTRKR.

June_2010.mp4 -- An animation of composite reflectivity (coloring), MCS tracks (gray shading), and bow echoes (black contours) for the month of June 2010.

project_code.zip -- The collection of Python scripts used to construct, train, and apply the CNN.

cnn.h5 -- The trained Unet 3+ model. The model performs required input clipping and scaling internally and can operate directly on reflectivity data.

sample_mosaic.npz -- Input file for 'inference_demo.py'. Contains a single composite reflectivity mosaic

sample_output.png -- The plot produced by "inference_demo.py".

inference_demo.py -- A Python script that demonstrates how to apply the bow echo segmentation CNN to reflectivity data, including post-processing steps.
DOI: 10.5281/zenodo.10955469
title: Datasets for Purgar et al. 2024: Supporting study registration to reduce research waste

description:
DOI: 10.5281/zenodo.12175245
title: Scripts and analysis files for categorization of PKZILLA matching proteomic peptides into protein-unique, protein-multimatch & exon-unique, exon-multimatch categories.

description: A .zip file containing the source data files & Jupyter notebook for analysis of the Prymnesium parvum 12B1 PKZILLA-detecting proteomic results (https://doi.org/10.5281/zenodo.10023441), and the resulting files from the workflow. See "Analysis of proteomic results" section of the manuscript Materials and Methods for further detail. 

Key files:



'PKZILLA-1_classify_peptides.txt' - A plaintext report of the # of classified peptides for PKZILLA-1

'PKZILLA-2_classify_peptides.txt' - A plaintext report of the # of classified peptides for PKZILLA-2

'./hierarchical_classified_xlsx/' - Excel spreadsheets with the classified peptides for PKZILLA-1 and PKZILLA-2

'./Process_into_polypeptide_coordinates/' - Workflow, results, and plots for back-alignment of peptides back to PKZILLA-1 and PKZILLA-2 genomic loci