cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kk77f7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.596327 -33.393317, 148.603065 -33.393317, 148.603065 -33.38658, 148.596327 -33.38658, 148.596327 -33.393317)), ((148.596327 -33.393317, 148.591836 -33.393317, 148.591836 -33.400055, 148.596327 -33.400055, 148.596327 -33.393317)), ((148.603065 -33.38658, 148.605311 -33.38658, 148.605311 -33.382088, 148.603065 -33.382088, 148.603065 -33.38658)), ((148.603065 -33.393317, 148.603065 -33.395563, 148.605311 -33.395563, 148.605311 -33.400055, 148.603065 -33.400055, 148.603065 -33.4023, 148.598573 -33.4023, 148.598573 -33.404546, 148.605311 -33.404546, 148.605311 -33.4023, 148.607556 -33.4023, 148.607556 -33.404546, 148.614294 -33.404546, 148.614294 -33.4023, 148.612048 -33.4023, 148.612048 -33.400055, 148.607556 -33.400055, 148.607556 -33.393317, 148.603065 -33.393317)), ((148.607556 -33.393317, 148.612048 -33.393317, 148.612048 -33.382088, 148.607556 -33.382088, 148.607556 -33.38658, 148.605311 -33.38658, 148.605311 -33.388826, 148.607556 -33.388826, 148.607556 -33.393317)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058251-240626123714530/datasets/export for details.
DOI: 10.15468/dl.76cjnm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.627769 -33.4023, 148.627769 -33.415775, 148.634506 -33.415775, 148.634506 -33.418021, 148.641243 -33.418021, 148.641243 -33.415775, 148.643489 -33.415775, 148.643489 -33.411284, 148.641243 -33.411284, 148.641243 -33.4023, 148.634506 -33.4023, 148.634506 -33.404546, 148.636752 -33.404546, 148.636752 -33.409038, 148.630014 -33.409038, 148.630014 -33.4023, 148.627769 -33.4023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058253-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26527657
title: Raw data Bleich et al 24

description: Ischemia/reperfusion (I/R) is inevitable during kidney transplantation and causes acute kidney injury (AKI), which affects immediate outcome and leads to chronic changes such as fibrotic remodeling of the graft. We investigated pro-fibrotic signaling after I/R, focusing on the complement component and receptor C5a/C5aR1 and macrophage/tubule crosstalk. Male dark agouti rats were subjected to I/R and kidneys were harvested 10 minutes, 6 hours, 24 hours, 3 days, 5 days and 8 weeks after reperfusion. The development of renal fibrosis was assessed by the detection of vimentin (VIM), α-smooth muscle actin (α-SMA) and collagen by immunohistochemistry and Sirius red staining, respectively. Characterization of C5a/C5aR1 activity and C5aR1+ cells was performed by multiplex mRNA analysis, ELISA, immunofluorescence flow cytometry and in situ hybridization in animal models and cell culture analyses. In the cell culture experiments, we focused on macrophage/tubule cell crosstalk in co-culture experiments and mimicked <i>in vivo</i> conditions by hypoxia/reoxygenation and supplementation with C5a. Already 6-24 h after induction of I/R in the rat model, C5a concentration in the plasma was significantly increased compared to control. The matrix components VIM and α-SMA peaked on day 5 and declined after 8 weeks, when an increase in collagen was detected using Sirius Red. In contrast to early I/R-induced C5a activation, renal <i>C5ar1</i> expression was maximal at day 5 and <i>C5</i> expression increased until week 8, indicating that renal upregulation of expression is not required for early complement activation. <i>C5aR1</i> mRNA was detected in neutrophils and macrophages, but not in proximal tubular cells in the injured kidneys. The macrophage/tubular cell co-culture experiments showed that macrophages were mainly responsible for the increased expression of fibrosis-associated genes in tubule cells (<i>ACTA2, VIM, SNAI1, TGFB1, FGF-2</i>), and hypoxia/reoxygenation had a partially enhancing effect. A direct pro-fibrotic effect of C5a was not observed. Increased TGF-ß levels were dependent on the differentiation of macrophages to the M2 subtype. In conclusion, early activation of mesenchymal markers in tubular epithelial cells leads to long-term fibrotic remodeling characterized by VIM expression and driven by TGF-ß-dependent macrophage/tubular crosstalk. The chemoattractive properties of complement C5a may contribute to the recruitment of pro-fibrotic macrophages.<br>
DOI: 10.6084/m9.figshare.26527657.v1
title: Raw data Bleich et al 24

description: Ischemia/reperfusion (I/R) is inevitable during kidney transplantation and causes acute kidney injury (AKI), which affects immediate outcome and leads to chronic changes such as fibrotic remodeling of the graft. We investigated pro-fibrotic signaling after I/R, focusing on the complement component and receptor C5a/C5aR1 and macrophage/tubule crosstalk. Male dark agouti rats were subjected to I/R and kidneys were harvested 10 minutes, 6 hours, 24 hours, 3 days, 5 days and 8 weeks after reperfusion. The development of renal fibrosis was assessed by the detection of vimentin (VIM), α-smooth muscle actin (α-SMA) and collagen by immunohistochemistry and Sirius red staining, respectively. Characterization of C5a/C5aR1 activity and C5aR1+ cells was performed by multiplex mRNA analysis, ELISA, immunofluorescence flow cytometry and in situ hybridization in animal models and cell culture analyses. In the cell culture experiments, we focused on macrophage/tubule cell crosstalk in co-culture experiments and mimicked <i>in vivo</i> conditions by hypoxia/reoxygenation and supplementation with C5a. Already 6-24 h after induction of I/R in the rat model, C5a concentration in the plasma was significantly increased compared to control. The matrix components VIM and α-SMA peaked on day 5 and declined after 8 weeks, when an increase in collagen was detected using Sirius Red. In contrast to early I/R-induced C5a activation, renal <i>C5ar1</i> expression was maximal at day 5 and <i>C5</i> expression increased until week 8, indicating that renal upregulation of expression is not required for early complement activation. <i>C5aR1</i> mRNA was detected in neutrophils and macrophages, but not in proximal tubular cells in the injured kidneys. The macrophage/tubular cell co-culture experiments showed that macrophages were mainly responsible for the increased expression of fibrosis-associated genes in tubule cells (<i>ACTA2, VIM, SNAI1, TGFB1, FGF-2</i>), and hypoxia/reoxygenation had a partially enhancing effect. A direct pro-fibrotic effect of C5a was not observed. Increased TGF-ß levels were dependent on the differentiation of macrophages to the M2 subtype. In conclusion, early activation of mesenchymal markers in tubular epithelial cells leads to long-term fibrotic remodeling characterized by VIM expression and driven by TGF-ß-dependent macrophage/tubular crosstalk. The chemoattractive properties of complement C5a may contribute to the recruitment of pro-fibrotic macrophages.<br>
DOI: 10.15468/dl.cxubg9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.726584 -33.4023, 148.726584 -33.411284, 148.72883 -33.411284, 148.72883 -33.4023, 148.726584 -33.4023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058254-240626123714530/datasets/export for details.
DOI: 10.15468/ma6ryu
title: Coleccion de Invertebrados

description: Material depositado en la Coleccion de Invertebrados de la Fundación Miguel Lillo
DOI: 10.15468/dl.ttydpx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.528954 -33.404546, 148.528954 -33.409038, 148.531199 -33.409038, 148.531199 -33.404546, 148.528954 -33.404546))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058255-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13284700
title: Supplementary Data file 3

description: Supplementary Data file 3 of Faust et al., "Adipocyte associated glucocorticoid signaling regulates normal fibroblast function which is lost in inflammatory arthritis" 

The mzdata files were used for the XCMS raw data output of the lipidomics analysis of SPE-chloroform fractions versus SPE-acetone fractions from the adipocyte conditioned media (ACM). The reversed phase HPLC-MS (negative ion mode) data were collected and converted to mzdata files and analyzed using R software (version 3.4.2) package XCMS (1.52.0), which reported m/z, retention time, fold change, p-value, and intensity for every data point (n=1,884).
DOI: 10.5281/zenodo.13284701
title: Supplementary Data file 3

description: Supplementary Data file 3 of Faust et al., "Adipocyte associated glucocorticoid signaling regulates normal fibroblast function which is lost in inflammatory arthritis" 

The mzdata files were used for the XCMS raw data output of the lipidomics analysis of SPE-chloroform fractions versus SPE-acetone fractions from the adipocyte conditioned media (ACM). The reversed phase HPLC-MS (negative ion mode) data were collected and converted to mzdata files and analyzed using R software (version 3.4.2) package XCMS (1.52.0), which reported m/z, retention time, fold change, p-value, and intensity for every data point (n=1,884).
DOI: 10.15468/dl.hsyhuk
title: Occurrence Download

description: A dataset containing 47459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.10.6_1",
 "TaxonKey is one of (Plantae, Insecta)"
 ]
}

 The dataset includes 47459 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058256-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3ku7s
title: Occurrence Download

description: A dataset containing 201410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.97627 41.61436,2.64076 41.61436,2.64076 41.95866,1.97627 41.95866,1.97627 41.61436))",
 "HasGeospatialIssue is false",
 "Year 2014-2023"
 ]
}

 The dataset includes 201410 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058249-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48nanv
title: Occurrence Download

description: A dataset containing 388999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gavia arctica (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 388999 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058248-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8ugfd
title: Occurrence Download

description: A dataset containing 168805 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Forest monitoring data of 45 plots over the Japanese archipelago during the period of 1980-2021"
 ]
}

 The dataset includes 168805 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058252-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zs4qn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.535691 -33.404546, 148.535691 -33.411284, 148.537937 -33.411284, 148.537937 -33.409038, 148.542428 -33.409038, 148.542428 -33.404546, 148.535691 -33.404546))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058257-240626123714530/datasets/export for details.
DOI: 10.15468/dl.rrwe7k
title: Occurrence Download

description: A dataset containing 13400617 records in GBIF matching the query:
SELECT 'year', GBIF_ISEA3HCode( 6, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000)) AS isea3hCellCode, familyKey, family, speciesKey, species, basisOfRecord, institutionCode,COUNT(*) AS occurrences, SUM(individualCount) AS totalOccurrenceCount, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate)) AS minTemporalUncertainty, IF(ISNULL(familyKey), NULL, SUM(COUNT(*)) OVER (PARTITION BY familyKey, 'year', basisOfRecord)) AS familyCount FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND continent IS NOT NULL AND (coordinateUncertaintyInMeters &lt;= 25000 OR coordinateUncertaintyInMeters IS NULL) AND kingdomKey = 1 AND hasCoordinate = TRUE AND speciesKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND 'year' IS NOT NULL AND basisOfRecord != 'FOSSIL_SPECIMEN' GROUP BY 'year', isea3hCellCode, familyKey, family, speciesKey, species, basisOfRecord, institutionCode ORDER BY 'year' DESC, familyKey ASC, speciesKey ASC, basisOfRecord ASC;

 The dataset's 13400617 records were derived from 42909 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mgjwb
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyrola asarifolia Michx.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 323 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206116-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdzd4c
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phleum phleoides Porcius",
 "BasisOfRecord is one of (Human Observation, Literature Occurrence, Living Specimen, Observation, Specimen, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2021",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 24 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275079-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxz38v
title: Occurrence Download

description: A dataset listing the 118604 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-115.40753 -9.55635,-37.59247 -9.55635,-37.59247 21.55635,-115.40753 21.55635,-115.40753 -9.55635))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 118604 records were derived from 3306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259771-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yme286
title: Occurrence Download

description: A dataset containing 62967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schoenoplectus tabernaemontani (C.C.Gmel.) Palla",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62967 records from 688 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044080-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcqauj
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "DatasetKey is Bernice P. Bishop Museum"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007898-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.254wms
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampranthus lavisii (L.Bolus) L.Bolus"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036230-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bcc6b
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sciadopitys verticillata (Thunb.) Siebold & Zucc.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 500 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044084-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq8oww
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nannofossil abundance of Hole 7-63A"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007898-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pnk8c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kniphofia sumarae Deflers"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036260-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az3un7
title: Occurrence Download

description: A dataset containing 3475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scirpus atrovirens Willd.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3475 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044088-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj3z2o
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prometheomys schaposchnikowi Satunin, 1901",
 "Country is Georgia"
 ]
}

 The dataset includes 120 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007898-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtt6yn
title: Occurrence Download

description: A dataset containing 979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus densata Mast."
 ]
}

 The dataset includes 979 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036273-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrsmh4
title: Occurrence Download

description: A dataset containing 2526 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aegopodium decumbens (Thunb.) Pimenov & Zakharova"
 ]
}

 The dataset includes 2526 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017010-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mpcp0
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pentacalia abietina (Willd. ex Wedd.) Cuatrec.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 402 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007898-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.768nvy
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Knowltonia capensis (L.) Huth"
 ]
}

 The dataset includes 149 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036331-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kanx7c
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crambe armena N.Busch"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008995-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqchhk
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guadua velutina Londoño & L.G.Clark"
 ]
}

 The dataset includes 113 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007898-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gev8w
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampranthus praecipitatus (L.Bolus) L.Bolus"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036323-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6f8r3e
title: Occurrence Download

description: A dataset containing 975 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanotriccus audax (Nelson, 1912)"
 ]
}

 The dataset includes 975 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042367-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.