cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/vbuz2e
title: Replication Data for: Crandall et al., J Biomech, 2022

description: Measurements to replicate hydraulic conductance and solute permeability calculations for mouse aorta with and without ascending thoracic aortic aneurysms.
DOI: 10.15468/dl.bqswe9
title: Occurrence Download

description: A dataset containing 3040726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Tanzania, United Republic of",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3040726 records from 1351 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017539-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta7h6r
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prionailurus bengalensis"
 ]
}

 The dataset includes 393 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002680-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su267g
title: Occurrence Download

description: A dataset containing 102350 species occurrences available in GBIF matching the query:
{
 "PublishingOrg" : [
 "is e1f6195c-b21b-4601-809e-bdf0488ee9a4"
 ]
}

 The dataset includes 102350 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002673-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17581186
title: Dataset for "Ecological niches and biogeography of nitrogen-fixing plants in Europe"

description: This repository contains the data and R scripts used to reproduce the analyses presented in the associated publication. The materials are organised to ensure transparency and reproducibility of all results described in the manuscript.

Repository Structuredata/ — contains all datasets used in the analyses (adjusted, according to the bylaws of the EVA database)Input/ — raw and processed input data used as the basis for all analysesOutput/ — folder for intermediate and final datasets generated by the analytical scriptsexplanations.xlsx — provides detailed descriptions of all variables, dataset structures, and data sources

scripts/ — includes R scripts corresponding to specific figures and tables in the publication:Figure_1.R — analysis and visualisation steps for Figure 1Figure_2.R — analysis and visualisation steps for Figure 2Figure_3.R — analysis and visualisation steps for Figure 3Table_1.R — analysis procedures underlying Table 1

Each script is annotated to guide the user through data processing, model fitting, and figure or table generation.

UsageAll scripts are written in R (version 4.2.1).To reproduce the results, ensure that the required R packages (listed at the beginning of each script) are installed.

ContactFor inquiries regarding data or code, please contact the corresponding author at:📧 [email protected]
DOI: 10.5281/zenodo.18435655
title: Dataset for "Ecological niches and biogeography of nitrogen-fixing plants in Europe"

description: This repository contains the data and R scripts used to reproduce the analyses presented in the associated publication. The materials are organised to ensure transparency and reproducibility of all results described in the manuscript.

Repository Structuredata/ — contains all datasets used in the analyses (adjusted, according to the bylaws of the EVA database)Input/ — raw and processed input data used as the basis for all analysesOutput/ — folder for intermediate and final datasets generated by the analytical scriptsexplanations.xlsx — provides detailed descriptions of all variables, dataset structures, and data sources

scripts/ — includes R scripts corresponding to specific figures and tables in the publication:Figure_1.R — analysis and visualisation steps for Figure 1Figure_2.R — analysis and visualisation steps for Figure 2Figure_3.R — analysis and visualisation steps for Figure 3Table_1.R — analysis procedures underlying Table 1

Each script is annotated to guide the user through data processing, model fitting, and figure or table generation.

UsageAll scripts are written in R (version 4.2.1).To reproduce the results, ensure that the required R packages (listed at the beginning of each script) are installed.

ContactFor inquiries regarding data or code, please contact the corresponding author at:📧 [email protected]
DOI: 10.60545/2qdegh
title: MUTPL Reptile Collection

description: The reptile collection of the Museo de Zoología, Universidad Técnica Particular de Loja consist of approximately 630 specimens (by the end of 2024) preserved in alcohol. The majority of the specimens are from El Oro, Loja, Morona Santiago and Zamora Chinchipe provinces, Southern Ecuador. Comprised of 19 families of snakes and lizards, many of which are underrepresented in other collections of the country.La colección de reptiles del Museo de Zoología de la Universidad Técnica Particular de Loja consta de aproximadamente 630 especímenes (hasta finales de 2024) conservados en alcohol. La mayoría de los ejemplares son de las provincias de El Oro, Loja, Morona Santiago y Zamora Chinchipe, sur de Ecuador. Compuesto por 19 familias de serpientes y lagartos, muchos de los cuales están subrepresentados en otras colecciones del país.
DOI: 10.5281/zenodo.18339311
title: Rising natural aerosols drive marine radiative forcing as pollution declines

description: Data presented in the main figures of the manuscript "Rising natural aerosols drive marine radiative forcing as pollution declines" by Moschos et al.

Disclaimer: Please contact the dataset creator prior to inclusion of data in any upcoming publication.
DOI: 10.15468/dl.gb9c5g
title: Occurrence Download

description: A dataset containing 904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tamandua mexicana"
 ]
}

 The dataset includes 904 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002682-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13suy8t
title: Stream Characteristics and Species Data for Foothill Yellow-legged Frogs in Southern San Benito and Western Fresno Counties, California, 2019-2021

description: These data contain information on stream characteristics (intermittency and temperature), vegetation (canopy and algal cover), amphibian, reptile, and fish observations, and pathogen (amphibian chytrid fungus, Batrachochytrium dendrobatidis) prevalence, all of which are relevant for the suitability of streams in Pinnacles National Park for the reintroduction of foothill yellow-legged frogs (Rana boylii).
DOI: 10.15468/dl.c7f28j
title: Occurrence Download

description: A dataset containing 155995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "Geometry POLYGON((-86.85773 16.42998,-87.1909 16.04421,-86.84604 15.89808,-85.52505 16.42414,-85.78808 16.62287,-86.85773 16.42998))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 155995 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002666-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34946/d6rw2b
title: Baptismal Font in Baptistery of San Giovanni, Florence

description: A high resolution photogrammetric capture, using 1897 images to capture the intricately carved details around the octagonal perimeter of the piece.
description: This 14th-century marble baptismal font was designed by a follower of Andrea Pisano, featuring marble reliefs of baptismal scenes.
description: Photogrammetry - Terrestrial
DOI: 10.6084/m9.figshare.31215697
title: LiteStyle_v1 data

description: LiteStyle: On-Device Fashion AnalyticsThe ProblemMobile e-commerce and digital wardrobes require real-time apparel analysis, but existing solutions often rely on GPU acceleration or cloud offloading, raising concerns regarding latency, privacy, and cost.Our SolutionLiteStyle is a lightweight framework for joint garment detection and formality prediction designed specifically for CPU-only devices.Architecture: Uses a YOLOv11n backbone. It reuses features from the SPPF module to power a compact StyleMLP head, eliminating the need for a secondary feature extractor.Deployment: Converts models to ONNX/OpenVINO with INT8 quantization. A Sequential Inference Protocol ensures memory stability across mobile SoCs and legacy x86 hardware.Key ResultsTested via generative-grounded synthetic imagery, LiteStyle delivers high-performance metrics on consumer-grade CPUs:Detection: 0.825 mAP@0.5 (DeepFashion2 subset).Classification: 0.921 AUC-ROC and 0.831 accuracy for formality.Efficiency: Achieves real-time throughput without GPU requirements.ContributionsLiteStyle provides a reproducible blueprint for CPU-centric fashion AI. Future work will expand the style taxonomy and move beyond synthetic benchmarks to real-world photograph datasets.
DOI: 10.6084/m9.figshare.31215697.v1
title: LiteStyle_v1 data

description: LiteStyle: On-Device Fashion AnalyticsThe ProblemMobile e-commerce and digital wardrobes require real-time apparel analysis, but existing solutions often rely on GPU acceleration or cloud offloading, raising concerns regarding latency, privacy, and cost.Our SolutionLiteStyle is a lightweight framework for joint garment detection and formality prediction designed specifically for CPU-only devices.Architecture: Uses a YOLOv11n backbone. It reuses features from the SPPF module to power a compact StyleMLP head, eliminating the need for a secondary feature extractor.Deployment: Converts models to ONNX/OpenVINO with INT8 quantization. A Sequential Inference Protocol ensures memory stability across mobile SoCs and legacy x86 hardware.Key ResultsTested via generative-grounded synthetic imagery, LiteStyle delivers high-performance metrics on consumer-grade CPUs:Detection: 0.825 mAP@0.5 (DeepFashion2 subset).Classification: 0.921 AUC-ROC and 0.831 accuracy for formality.Efficiency: Achieves real-time throughput without GPU requirements.ContributionsLiteStyle provides a reproducible blueprint for CPU-centric fashion AI. Future work will expand the style taxonomy and move beyond synthetic benchmarks to real-world photograph datasets.
DOI: 10.48662/daks-483
title: Kartierungsergebnisse der krautigen Vegetation der Park-/Grünanlagen der Stadt Freiburg i. Br. [Daten]

description: Kartierungsergebnisse der krautigen Vegetation der Park-/Grünanlagen der Stadt Freiburg i. Br. Insgesamt wurden in elf untersuchten Park-/Grünanlagen der Stadt Freiburg i. Br. 127 Aufnahmequadrate für die Vegetationserfassung etabliert. Es wurden extensiv gepflegte (Wiesen und Langgrasflächen) und intensiv gepflegte Bereiche (Rasen) untersucht. Die Kategorien der untersuchten Flächen sind dabei folgende:<br>Wiesen: Bereiche, die in der Regel mit 1-2 Mahdvorgängen im Jahr extensiv gepflegt werden. Das Mahdgut wird abgeräumt.<br>Langgrasflächen: Bereiche, die in der Regel mit 1-2 Mahdvorgängen im Jahr extensiv gepflegt werden. Das Mahdgut verbleibt auf der Fläche.<br>Gebrauchsrasen/Spielrasen: Bereiche, die in regelmäßigen Abständen während der Vegetationsperiode gemulcht werden. Zusätzlich zur Artenvielfalt wurden nach der international verwendeten Aufnahmen-Skala von Braun-Blanquet die Artmächtigkeiten (Menge) und die Mächtigkeiten der blühenden Arten erfasst. Hierbei wurde die ursprüngliche Schätzskala von Braun-Blanquet verwendet.<br>Die Kartierungsjahre waren 2020 und 2021.
DOI: 10.34740/kaggle/dsv/14682346
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.cf39xr
title: Occurrence Download

description: A dataset containing 113801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Year is 2024",
 "Month is September"
 ]
}

 The dataset includes 113801 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002675-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29345672
title: Model output for "Atmospheric and deposition responses of <sup>10</sup>Be to volcanic eruptions inferred from the aerosol-climate model ECHAM6.3-HAM2.3-SALSA2.0: <sup>10</sup>Be" published in the journal GRL

description: Model output of <sup>10</sup>Be data over the studied volcanic period.<i>* novol * indicates the simulation without </i><i>SO</i><sub><em>2</em></sub><i> injections.</i><i>* vol * indicate the simulation with SO</i><sub><em>2</em></sub><i> injections for </i><i>Pinatubo, El Chichón and Agung eruptions.</i><i>.</i>
DOI: 10.6084/m9.figshare.29345672.v1
title: Model output for "Atmospheric and deposition responses of <sup>10</sup>Be to volcanic eruptions inferred from the aerosol-climate model ECHAM6.3-HAM2.3-SALSA2.0: <sup>10</sup>Be" published in the journal GRL

description: Model output of <sup>10</sup>Be data over the studied volcanic period.<i>* novol * indicates the simulation without </i><i>SO</i><sub><em>2</em></sub><i> injections.</i><i>* vol * indicate the simulation with SO</i><sub><em>2</em></sub><i> injections for </i><i>Pinatubo, El Chichón and Agung eruptions.</i><i>.</i>
DOI: 10.15468/dl.cnzx6g
title: Occurrence Download

description: A dataset containing 6053 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Geometry POLYGON((-111.50769 30.85717,-110.29835 30.85717,-110.29835 32.14713,-111.50769 32.14713,-111.50769 30.85717))",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia",
 "Year 1970-2020"
 ]
}

 The dataset includes 6053 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002684-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.17193.25440
title: Scan-to-model mg pipeline
DOI: 10.5281/zenodo.17495232
title: Data supplementary to "Organism-sediment interactions and the evolution of a unique trilobite morphology"

description: The data compiled in this repository include files for the raw data, 3D morphology creation tool, and 3D geometries and images that were used in data collection for the manuscript titled "Organism-sediment interactions and the evolution of a unique trilobite morphology" published in Proceedings of the Royal Society B.
DOI: 10.5281/zenodo.17495231
title: Data supplementary to "Organism-sediment interactions and the evolution of a unique trilobite morphology"

description: The data compiled in this repository include files for the raw data, 3D morphology creation tool, and 3D geometries and images that were used in data collection for the manuscript titled "Organism-sediment interactions and the evolution of a unique trilobite morphology" published in Proceedings of the Royal Society B.
DOI: 10.15468/dl.qjnn4m
title: Occurrence Download

description: A dataset containing 128714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physeter"
 ]
}

 The dataset includes 128714 records from 606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002672-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndd6q4
title: Occurrence Download

description: A dataset containing 64135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bidens pilosa"
 ]
}

 The dataset includes 64135 records from 1046 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002674-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ustf5g
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.39129 40.35332,-4.33886 40.35332,-4.33886 40.36795,-4.39129 40.36795,-4.39129 40.35332))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 163 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003433-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.931zcrjq0
title: Integrating top-down and bottom-up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone

description: Understanding the phenotypic and genetic architecture of reproductive
 isolation is a longstanding goal of speciation research. In several
 systems, large-effect loci contributing to barrier phenotypes have been
 characterized, but such causal connections are rarely known for more
 complex genetic architectures. In this study, we combine ‘top-down’ and
 ‘bottom-up’ approaches with demographic modeling toward an integrated
 understanding of speciation across a monkeyflower hybrid zone. Previous
 work suggests that pollinator visitation acts as a primary barrier to gene
 flow between two divergent red- and yellow-flowered ecotypes of Mimulus
 aurantiacus. Several candidate isolating traits and anonymous SNP loci
 under divergent selection have been identified, but their genomic
 positions remain unknown. Here, we report findings from demographic
 analyses that indicate this hybrid zone formed by secondary contact, but
 that subsequent gene flow was restricted by widespread barrier loci across
 the genome. Using a novel, geographic cline-based genome scan, we
 demonstrate that candidate barrier loci are broadly distributed across the
 genome, rather than mapping to one or a few ‘islands of speciation.’
 Quantitative trait locus (QTL) mapping reveals that most floral traits are
 polygenic, with little evidence that QTL co-localize, indicating that most
 traits are genetically independent. Finally, we find little evidence that
 QTL and candidate barrier loci overlap, suggesting that some loci
 contribute to other forms of reproductive isolation. Our findings
 highlight the challenges of understanding the genetic architecture of
 reproductive isolation and reveal that barriers to gene flow aside from
 pollinator isolation may play an important role in this system.
DOI: 10.5061/dryad.2jm63xst9
title: Data from: A self-transmissible plasmid from a hyperthermophile that facilitates genetic modification of diverse Archaea

description: Conjugative plasmids (CP) are self-transmissible mobile genetic elements
 which transfer DNA between host cells via Type IV Secretion Systems
 (T4SS). While T4SS-mediated conjugation has been well-studied in bacteria,
 information is sparse in Archaea and known representatives exist only in
 the Sulfolobales order of Crenarchaeota. Here we present the first
 self-transmissible plasmid identified in a Euryarchaeon, Thermococcus sp.
 33-3. The 103 kbp plasmid, pT33-3, is seen in CRISPR-spacers throughout
 the Thermococcales order. We demonstrate that pT33-3 is a bona fide
 conjugative plasmid that requires cell-to-cell contact, and is dependent
 upon canonical, plasmid-encoded T4SS-like genes. Under laboratory
 conditions pT33-3 transfers to various Thermococcales, and transconjugants
 propagate at 100°C. Using pT33-3, we developed a genetic toolkit which
 allows modification of phylogenetically diverse Archaeal genomes. We
 demonstrate pT33-3–mediated plasmid mobilization and subsequent targeted
 genome modification in previously untransformable Thermococcales species,
 and extend this process to interphylum transfer to a Crenarchaeon.
description: Illumina sequencing of DNA isolated from cultures, or Sanger
 sequencing of plasmid DNA where appropriate.
description: Sequences are provided in fasta format for use with any text
 editor or DNA viewing software.
DOI: 10.5061/dryad.tht76hf39
title: Postdoc academy: Succeeding as a postdoc pre- and post-course survey

description: The data named "PrePost_5Run_Consent" is the matched data for
 the pre- and the post-course surveys for a Massive Open Online Course,
 Postdoc Academy: Succeeding as a Postdoc. The pre-course survey had five
 items asking participants to rate their competency in making career
 transitions skillfully, planning career, developing collaborative research
 relationships, rebounding from setbacks or challenges, and engaging in
 self-reflection on a five-point Likert scale. The pre-course survey also
 has items collecting participants' demographic information including
 gender, ethnicity, discipline, and country of origin. The post-course
 survey included the same five items assessing participants'
 perceptions of their skills upon completion of the course. Both surveys
 were embedded in the Succeeding as a Postdoc course on the edX platform
 and data were collected through Qualtrics. The course was offered five
 times from January 2020 through January 2022.
DOI: 10.5061/dryad.4b8gthtgz
title: STRA6 promotes thyroid carcinoma progression via activation of the ILK/AKT/mTOR axis in cells and female nude mice

description: Background: Metastasis has emerged to be an important cause for poor
 prognosis of thyroid carcinoma (TC) and its molecular mechanisms are not
 fully understood. STRA6 is a multifunctional membrane protein widely
 expressed in embryonic and adult tissues. The function and mechanism of
 STRA6 in TC remain elusive. Objective: We aimed to explore the role of
 STRA6 in TC progression and provide a therapeutic target for TC. Methods:
 The expression and clinicopathological relevance of STRA6 were explored in
 TC. Stable STRA6-knockdown TC cells were established and used to determine
 the biological function of STRA6 in vitro and in vivo. RNA-sequencing and
 Co-immunoprecipitation were performed to unveil the molecular mechanism of
 STRA6 in TC progression. The potential of STRA6 as a therapeutic target
 was evaluated by lipid nanoparticles (LNPs) containing siRNA. Results:
 STRA6 was upregulated in TC and correlated with aggressive
 clinicopathological features including extrathyroidal extension and lymph
 node metastasis, which contributed to the poor prognosis of TC. STRA6
 facilitated TC progression by enhancing proliferation and metastasis in
 vitro and in vivo. Mechanistically, STRA6 could interact with ILK and
 subsequently activate the AKT/mTOR signaling pathway. We further unveiled
 that STRA6 reprogrammed lipid metabolism through SREBP1, which was crucial
 for the metastasis of TC. Moreover, STRA6 siRNA delivered by LNP
 significantly inhibited cell growth in xenograft tumor models.
 Conclusions: Our study demonstrates the critical roles of STRA6
 contributing to TC progression via the ILK/AKT/mTOR axis, which may
 provide a novel prognostic marker as well as a promising therapeutic
 target for aggressive TC.