cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1115102.10fu
title: SH1115102.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1115103.10fu
title: SH1115103.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1115104.10fu
title: SH1115104.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17280189
title: ScRNAseq analysis of data from patients with T1D and healthy donors

description: Datasets for the analysis of scRNAseq data for the manuscript:



Imbalance of stem-like and effector T cell states in children with early type 1 diabetes across conventional and regulatory subsets

Veronika Niederlova1,2, Ales Neuwirth1, Vit Neuman3, Juraj Michalik1, Bela Charvatova1, Martin Modrak4, Zdenek Sumnik3, Ondrej Stepanek1

1 Laboratory of Adaptive Immunity, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czechia2 Department of Cell Biology, Faculty of Science, Charles University in Prague, Czechia3 Department of Pediatrics, 2nd Faculty of Medicine, Charles University in Prague & Motol University Hospital, Prague, Czechia4 Department of Bioinformatics, Second Faculty of Medicine, Charles University, Prague, Czechia


Please see the associated GitHub repository for recapitulation of the analysis: https://github.com/Lab-of-Adaptive-Immunity/dia.

The repository contains four folders:



the folder initdata contains rds files from different batches, with only basic QC and no integration;

the folder processed_v2 contains integrated datasets as they appear in the manuscript. If you have questions re: metadata, annotation, or if you would like to get the .rds files from conventional CD4 and CD8 (without unconventional T cells and NK cells), just let us know, we're always happy to help. We weren't able to upload these because of the file size limits; 

the folder data_from_other_studies contains raw and/or processed data from published studies which we used to validate our findings;

the folder flow_data contains data from our flow cytometry analysis.
DOI: 10.5281/zenodo.17280190
title: ScRNAseq analysis of data from patients with T1D and healthy donors

description: Datasets for the analysis of scRNAseq data for the manuscript:



Imbalance of stem-like and effector T cell states in children with early type 1 diabetes across conventional and regulatory subsets

Veronika Niederlova1,2, Ales Neuwirth1, Vit Neuman3, Juraj Michalik1, Bela Charvatova1, Martin Modrak4, Zdenek Sumnik3, Ondrej Stepanek1

1 Laboratory of Adaptive Immunity, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czechia2 Department of Cell Biology, Faculty of Science, Charles University in Prague, Czechia3 Department of Pediatrics, 2nd Faculty of Medicine, Charles University in Prague & Motol University Hospital, Prague, Czechia4 Department of Bioinformatics, Second Faculty of Medicine, Charles University, Prague, Czechia


Please see the associated GitHub repository for recapitulation of the analysis: https://github.com/Lab-of-Adaptive-Immunity/dia.

The repository contains four folders:



the folder initdata contains rds files from different batches, with only basic QC and no integration;

the folder processed_v2 contains integrated datasets as they appear in the manuscript. If you have questions re: metadata, annotation, or if you would like to get the .rds files from conventional CD4 and CD8 (without unconventional T cells and NK cells), just let us know, we're always happy to help. We weren't able to upload these because of the file size limits; 

the folder data_from_other_studies contains raw and/or processed data from published studies which we used to validate our findings;

the folder flow_data contains data from our flow cytometry analysis.
DOI: 10.17632/tmxgwfsz4w.2
title: Road Construction in Poland

description: The dataset comprises the selected information on road construction contracts ordered in Poland in 2014-2017. All of them were executed under public procurement law. However, not all road construction orders from that time are included in the database due to the unavailability of data. There are the following types of data: label of contracts, type of works (construction of a new road or modernization of an existing one), type of road (highway, express road, national road, voivodeship road, county road), location of the road by voivodeship, type of order (order of design, then a construction ordered separately - marked as "design then build"; design and the construction jointly ordered - marked as "design and build"), the price for design (in PLN), price for construction works (in PLN), total price for design and construction works, lengths of the section of the road, total price per 1 km of the road. In the case of "design and build" orders separate prices for the design, and for the construction works are not given ("n/a" are placed there). Data were collected to verify if the unit price for 1 km of road is higher when the order type is "design and build".
DOI: 10.25549/inscriptifact-ouc111297306
title: Virgin and Child (Virgin of Kykkos)

description: [Text Description:] Icon, Virgin Mary and infant Jesus ❧ [Medium:] Wood, Paint ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Wood painted icon. ❧ [Physical Object Note:] Paint has come off and areas repainted. ❧
DOI: 10.15468/dl.9svn4d
title: Occurrence Download

description: A dataset containing 37273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Picozoa"
 ]
}

 The dataset includes 37273 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063553-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6j4e5
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyelecia Ross, 1932"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002369-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rngxwhz4mh.1
title: OOCC Cooling Paper Resubmission Supplementary Citations

description: Supplementary Citations for Baiman et al. 2024 "Addressing the Urgent Need for Direct Climate Cooling: Rationale and Options" Oxford Open Climate Change submission.
DOI: 10.25549/inscriptifact-ouc111317610
title: Cuneiform Tablet 8

description: [Text Description:] Cuneiform Tablet 8 with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.25549/inscriptifact-ouc111360706
title: Persepolis Fortification Elamite Tablet 2012.104, Fort 2012.104

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2012.104 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on upper edge. ❧ [Physical Object Note:] Several fragments joined together. Lower right of original tablet broken off. Cracks and abrasions on obverse, reverse. ❧ [Physical Object Note:] Top left quadrant is Fort 2009.102; bottom left is Fort 2012.102; top right is Fort 2012.104.
DOI: 10.25549/inscriptifact-ouc111318359
title: Cuneiform Tablet D

description: [Text Description:] Cuneiform Tablet D ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.25549/inscriptifact-ouc111318313
title: Cuneiform Tablet D

description: [Text Description:] Cuneiform Tablet D ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.eggiaw
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos MO Specimen Data",
 "TaxonKey is Piper phytolaccifolium Opiz"
 ]
}

 The dataset includes 166 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031251-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111318196
title: Cuneiform Tablet D

description: [Text Description:] Cuneiform Tablet D ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.25549/inscriptifact-ouc111299334
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.25549/inscriptifact-ouc111318287
title: Cuneiform Tablet D

description: [Text Description:] Cuneiform Tablet D ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.zqxtce
title: Occurrence Download

description: A dataset containing 4270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus citrifolia Mill."
 ]
}

 The dataset includes 4270 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044270-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111299909
title: Sinai Syriac 30: Old Syriac Gospels, Sinai Syriac 30: Old Sinai Syriac Gospels; Syr s, Syrus Sinaiticus

description: [Text Description:] One of two copies of the old Syriac translation pre-dating the standard Syriac version. Includes a nearly complete text of Matthew, Mark, Luke and John. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Old Sinai Syriac Gospels; Syr s ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.25549/inscriptifact-ouc111298592
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.15468/dl.rnd5ef
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euhagena nebraskae Edwards, 1881"
 ]
}

 The dataset includes 45 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044288-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111299478
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.25549/inscriptifact-ouc111299523
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.15468/dl.2nfd2q
title: Occurrence Download

description: A dataset containing 36660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "StateProvince is Cádiz",
 "Year 1000-2019"
 ]
}

 The dataset includes 36660 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052402-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nzszth3rkw.1
title: The influence of clay matrix and activity of sulphidogenic microbial communities on the formation of sulphide mineral phases

description: The study aimed to determine the role of sulphidogenic microorganisms in the formation of iron sulphide minerals synthesized in laboratory conditions for 6 and 12 months with or without the addition of mineral matrix (in the form of kaolinite). The presence of clay minerals may promote the crystallization of sulphides. In all variants, Baar medium was used with the addition of FeCl2 as a source of iron and Na2SO4 as a source of sulphur for sulphate reducers or Na2S in abiotic variants. The obtained post-culture sediments were subjected to XRD analysis and SEM imaging. The test results confirmed the presence of iron sulphides, i.e. mackinawite, greigite and pyrite. It was found that the formation of pyrite and other existing mineral phases is influenced by the presence of sulphur(0) and iron(III) as an oxidizing agent, as well as the activity of microorganisms that modify the crystallization environment. Additionally, phyllosilicates constitute a potential crystallization matrix of sulphide phases. These nucleation sites are created due to the mineral packaged structure, the presence of acidic sites in the crystal structure and the lamellar shape. Moreover, in biotic variants, the products of bacterial metabolism (exopolymeric compounds) influenced the flocculation of the kaolin sediment, causing a decrease in microbiological activity and thus inhibiting the conversion of greigite into pyrite. The extension of the experiment time primarily influenced the degree of order in the structure of the resulting mineral phases.
DOI: 10.25549/inscriptifact-ouc111317323
title: Cuneiform Tablet Blackened

description: [Text Description:] Cuneiform Tablet Blackened ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.ppfn26
title: Occurrence Download

description: A dataset listing the 799 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103.35756 20.01453,-75.24709 20.01453,-75.24709 31.26453,-103.35756 31.26453,-103.35756 20.01453))",
 "HasCoordinate is true",
 "TaxonKey is Bryozoa",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 799 records were derived from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071769-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111317324
title: Cuneiform Tablet Blackened

description: [Text Description:] Cuneiform Tablet Blackened ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.25549/inscriptifact-ouc111317253
title: Cuneiform Tablet Blackened

description: [Text Description:] Cuneiform Tablet Blackened ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.stcqvc
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Promops centralis Thomas, 1915"
 ]
}

 The dataset includes 396 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060067-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111299082
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.25549/inscriptifact-ouc111299126
title: Sinai Syriac 30: Lives of Holy Women, Sinai Syriac 30: Lives of Holy Women, Syrus Sinaiticus

description: [Text Description:] Stories and meditations on holy women/saints, including those who were martyrs, and those in the Bible and Deuterocanonical literature. ❧ [Text or Publication Number Note:] Sinai Syriac 30: Lives of Holy Women ❧ [Medium:] Parchment ❧ [Script Note:] Syriac: Estrangela ❧ [Physical Object Description:] Palimpsest, with overtext written in Syriac, undertext in Syriac or Greek. Ink on overtext is black, ink on undertext has oxidized to faded brown. ❧ [Physical Object Note:] Many of the pages show some water damage. ❧ [Physical Object Note:] Back cover is still extant, shows evidence of roughly stitched repair. ❧
DOI: 10.15468/dl.296pmz
title: Occurrence Download

description: A dataset containing 659 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythroxylum argentinum O.E.Schulz"
 ]
}

 The dataset includes 659 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071747-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpnhgt
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.1105 41.59875,19.112 40.50314,21.66097 34.48846,28.86071 35.11452,26.1105 41.59875))",
 "TaxonKey is Pinus halepensis Mill."
 ]
}

 The dataset includes 402 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063555-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111318471
title: Cuneiform Tablet F

description: [Text Description:] Cuneiform Tablet F ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script