cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13289655
title: RemEff: Clusters, MSAs and HMMs of fungal proteins

description: Complete clustering dataset from the remeff paper.<br>"clusters.tsv" gives the IDs of cluster centroids (representative members), and cluster members in the first and second columns, respectively.<br>"remeff_fasta.ff{data,index}" gives the multiple sequence alignments of all clusters presented in "clusters.tsv"The ffdata, ffindex format (https://github.com/soedinglab/ffindex_soedinglab) is formatted to be used by the HHsuite3 software (https://github.com/soedinglab/hh-suite)<br><br>"remeff_a3m.ff{data,index}" gives the multiple sequence alignments from "remeff_fasta" but in a3m format, and is enriched with partial alignments of sequences from uniprot, and has some redundancy removed to avoid biasing HMM construction.<br>"remeff_hhm.ff{data,index}" gives the HHsuite3 HMM representations of all clusters. This file is build from "remeff_a3m".<br>"remeff_cs219.ff{data,index}" gives the HHsuite3 prefiltering dataset for all clusters. This file is build from "remeff_a3m".<br><br>To run searches against this database using hhsuite, you need the six files matching the pattern remeff_a3m*, remeff_cs219*, and remeff_hhm*.<br><br>You need to uncompress them using gzip or pigz.
DOI: 10.6084/m9.figshare.13289655.v1
title: RemEff: Clusters, MSAs and HMMs of fungal proteins

description: Complete clustering dataset from the remeff paper.<br>"clusters.tsv" gives the IDs of cluster centroids (representative members), and cluster members in the first and second columns, respectively.<br>"remeff_fasta.ff{data,index}" gives the multiple sequence alignments of all clusters presented in "clusters.tsv"The ffdata, ffindex format (https://github.com/soedinglab/ffindex_soedinglab) is formatted to be used by the HHsuite3 software (https://github.com/soedinglab/hh-suite)<br><br>"remeff_a3m.ff{data,index}" gives the multiple sequence alignments from "remeff_fasta" but in a3m format, and is enriched with partial alignments of sequences from uniprot, and has some redundancy removed to avoid biasing HMM construction.<br>"remeff_hhm.ff{data,index}" gives the HHsuite3 HMM representations of all clusters. This file is build from "remeff_a3m".<br>"remeff_cs219.ff{data,index}" gives the HHsuite3 prefiltering dataset for all clusters. This file is build from "remeff_a3m".<br><br>To run searches against this database using hhsuite, you need the six files matching the pattern remeff_a3m*, remeff_cs219*, and remeff_hhm*.<br><br>You need to uncompress them using gzip or pigz.
DOI: 10.5441/001/1.ff3138d1
title: Data from: Study "Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)"

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.ff3138d1/1
title: Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)-barometer

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.ff3138d1/2
title: Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)-light-levels

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.ff3138d1/3
title: Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)-tracks

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.ff3138d1/4
title: Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)-twilights

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.ff3138d1/5
title: Switzerland Lausanne - Long term study on migratory movement of Alpine swifts (Apus melba)-reference-data

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5281/zenodo.4286472
title: CUTLER-GDELT Datasets

description: GDELT (https://www.gdeltproject.org/) is a project that monitors news from all over the world and in more than 100 languages in order to gather data about current events. This is a subset of the GDELT dataset that is relevant to the CUTLER project. This dataset is used by UNIKO and USTUTT to analyse social events and public news in the four pilot cities and helps policy makers in city pilots to understand media and public sentiments regarding these events and news. This data could also be useful to researchers doing research on online news spread behaviour.
DOI: 10.5281/zenodo.4286471
title: CUTLER-GDELT Datasets

description: GDELT (https://www.gdeltproject.org/) is a project that monitors news from all over the world and in more than 100 languages in order to gather data about current events. This is a subset of the GDELT dataset that is relevant to the CUTLER project. This dataset is used by UNIKO and USTUTT to analyse social events and public news in the four pilot cities and helps policy makers in city pilots to understand media and public sentiments regarding these events and news. This data could also be useful to researchers doing research on online news spread behaviour.
DOI: 10.5281/zenodo.4291759
title: Organisation for Economic Co-operation and Development (OECD) data for Antalya (Turkey), Antwerp (Belgium), Cork (Ireland), Thessaloniki (Greece) (source: OECD)

description: The data have been collected via the official OECD Application Programming Interface (API)<strong> </strong>and<strong> </strong>includes the following indicators: EmpPlaRes - Employment at place of residence LfPartRa - Labour Force and Participation rate UnemReg - Unemployment in regions RegGdpTL2 - Regional Gross Domestic Product (Large regions TL2) GDPLT3 - Gross Domestic Product (Small regions TL3) RegEmIndu - Regional Employment by industry (ISIC rev 4) RegGVAWorker - Regional GVA per worker RegIncPC - Regional income per capita Source: https://data.oecd.org/api/
description: Data crawler: https://github.com/CUTLER-H2020/DataCrawlers/blob/master/Economic/OECD.R
DOI: 10.5281/zenodo.4291758
title: Organisation for Economic Co-operation and Development (OECD) data for Antalya (Turkey), Antwerp (Belgium), Cork (Ireland), Thessaloniki (Greece) (source: OECD)

description: The data have been collected via the official OECD Application Programming Interface (API)<strong> </strong>and<strong> </strong>includes the following indicators: EmpPlaRes - Employment at place of residence LfPartRa - Labour Force and Participation rate UnemReg - Unemployment in regions RegGdpTL2 - Regional Gross Domestic Product (Large regions TL2) GDPLT3 - Gross Domestic Product (Small regions TL3) RegEmIndu - Regional Employment by industry (ISIC rev 4) RegGVAWorker - Regional GVA per worker RegIncPC - Regional income per capita Source: https://data.oecd.org/api/
description: Data crawler: https://github.com/CUTLER-H2020/DataCrawlers/blob/master/Economic/OECD.R
DOI: 10.5281/zenodo.4271191
title: Global Wheat Head Dataset - 2020 challenge version

description: !!! DEPRECATED: Please use V3: https://zenodo.org/record/4275239 (Your feedback help us to eliminate small bugs) This is the only official version of the Global Wheat Head Dataset presented in David et al. (2020) . It's a corrected version of the dataset published on Kaggle, and the one used for the Codalab challenge. Test labels are available on request by filling the form here or contacting <strong>etienne.david@outlook.com</strong> If you use the dataset for your paper, please cite: https://doi.org/10.34133/2020/3521852 If you want to benchmark your solution and get localization and counting metrics, please submit to the codalab challenge:
description: {"references": ["David E. et al. Plant Phenomics (2020) : Global Wheat Head Detection (GWHD) Dataset: A Large and Diverse Dataset of High-Resolution RGB-Labelled Images to Develop and Benchmark Wheat Head Detection Methods"]}
DOI: 10.5441/001/1.nn518dc4
title: Data from: Study "Switzerland Solothurn - Long term study on migratory movement of Alpine swifts (Apus melba)"

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.nn518dc4/1
title: Switzerland Solothurn - Long term study on migratory movement of Alpine swifts (Apus melba)-barometer

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.nn518dc4/2
title: Switzerland Solothurn - Long term study on migratory movement of Alpine swifts (Apus melba)-light-levels

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.
DOI: 10.5441/001/1.nn518dc4/3
title: Switzerland Solothurn - Long term study on migratory movement of Alpine swifts (Apus melba)-tracks

description: Meier CM, Karaardıç H, Aymí R, Peev SG, Witvliet W, Liechti F. 2020. Population-specific adjustment of the annual cycle in a super-swift trans-Saharan migrant. J Avian Biol. 51(11):e02515. doi:10.1111/jav.02515
description: For migratory birds optimal timing of the onset of reproduction is vital, especially when suitable conditions for reproduction occur only for a short while during the year. With increasing latitude the suitable period becomes shorter and we expect the organization of annual cycle to be more synchronized to the local conditions across individuals of same population. This should result in low variation of arrival and departure date in breeding sites at higher latitudes. We quantify the temporal and geographical variation in pre‐ and post‐breeding migration between individuals from four different populations of alpine swifts Tachymarptis melba along a latitudinal gradient. We tracked 215 individuals in three years with geolocators. The two western and two eastern populations showed separate migratory flyways and places of residence in Africa. Length of stay at the breeding sites was negatively correlated with latitude and differed by more than a month between populations. Duration of migration was similarly short in all populations (median 6.2 days in autumn and 8.7 days in spring). However, variation in timing of migration was unrelated to latitude and individuals everywhere arrived in the same asynchrony at the breeding site.