cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.53m76/3
title: Online File 3 graphcor

description: Graphic Correlation Project
DOI: 10.5061/dryad.53m76/4
title: Online File 4 events Correlation Saltarin and 105 AM

description: Events of the Line of Correlation
DOI: 10.5061/dryad.53m76/5
title: Online File 5 description cores 105AM and Saltarin

description: Lithological description of cores 105AM and Saltarin
DOI: 10.5061/dryad.53m76/6
title: Online File 6 all supp tables

description: All supplementary tables in excel format.
DOI: 10.5061/dryad.56cn1/1
title: Zip file of README text and R scripts

description: This zip file contains R scripts containing code and functions for running simulations of the model.  The README file describes what each file does.
DOI: 10.5061/dryad.6g75n/2
title: Individual Data

description: Sample IDs, population of origin, hybrid/inbred status and sex for the individuals included in the analysis.
DOI: 10.5061/dryad.6g75n/3
title: TLR Genotypes

description: TLR genotypes for each animal included in the analysis.  Haplotype codes correspond to sequences provided in the archive "TLR inferred haplotype sequences.zip", also associated with this paper.
DOI: 10.5061/dryad.6g75n/4
title: MHC genotypes

description: Presence/absence data for MHC sequences observed in each animal in the analysis.  To relate sequence codes back to their original sequences, refer to Figure 3 and Supplementary Table S3 of the associated paper.
DOI: 10.5061/dryad.7155d/1
title: Genome-wide sequences of Darwin's finches

description: This dataset contains genotype information for the whole genome sequencing of 14 populations of Darwin's finches. Please see ReadMe file for the detailed description.
DOI: 10.5061/dryad.89n87/10
title: UCE contigs - aligned, trimmed, and filtered (Ants101T-F90).

description: All UCE contigs (aligned and trimmed) for the Ants101T-F90 data set. Contigs aligned with MAFFT and trimmed with Gblocks. Alignments filtered to include only those alignments with at least 90% taxon occupancy.
DOI: 10.5061/dryad.89n87/9
title: R script to calculate locus stats.

description: R script used to calculate mean gene-tree bootstrap and mean GC-variance among taxa for a given set of gene trees and associated alignment files.
DOI: 10.5061/dryad.8m3kv/1
title: Diatom3_S1_L001_R1_001

description: Illumina fastq
DOI: 10.5061/dryad.8m3kv/2
title: Diatom3_S1_L001_R2_001

description: Illumina fastq
DOI: 10.5061/dryad.8m3kv/3
title: DIATOM5_S1_L001_R1_001

description: Illumina fastq
DOI: 10.5061/dryad.8m3kv/4
title: DIATOM5_S1_L001_R2_001

description: Illumina fastq
DOI: 10.5061/dryad.934fg/5
title: Supplemental_File5_BlastQUERY_for_raw_reads_mammals

description: The ucp1 gene sequences used for BLASTn against the raw sequence data for reptiles.
DOI: 10.5061/dryad.934fg/6
title: Supplemental_File6_BlastQUERY_for_raw_reads_reptiles_birds

description: The ucp1 gene sequences used for BLASTn against the raw sequence data for reptiles.
DOI: 10.5061/dryad.96584/1
title: Additional file 1: Metadata and taxonomic assignments for TCGA bacterial read pairs

description: Summary of TCGA data by bacterial read pair. This file is a tab-delimited text file of all TCGA read pairs and their corresponding metadata and bacterial taxonomic assignments from the first release of TCGA data. Comments are denoted by a #. Abbreviations for sequencing center and tissue source site are as follows: BCGSC—British Columbia Genome Sequencing Center; Broad—The Broad Institute of MIT and Harvard; Fox Chase—Fox Chase Cancer Center; MSKCC—Memorial Sloan Kettering Cancer Center; UCSF—University of California San Francisco; UNC—University of North Carolina; Wash Univ St. Louis—Washington University in St. Louis.
DOI: 10.5061/dryad.9tq18/1
title: Nitrogen deposition cancels out exotic earthworm effects on plant-feeding nematode communities
DOI: 10.5061/dryad.b4q6q/1
title: dryad_ad

description: individual data (morphological and demographic) from the experimental birds (translocated and resident).
DOI: 10.5061/dryad.b4q6q/2
title: dryad_chicks

description: chick data from the experimental birds (chicks of translocated and resident individuals).
DOI: 10.5061/dryad.c186k/1
title: Percent_Dominance_Communities

description: The percentage dominance of species in each taxon per site.
DOI: 10.5061/dryad.c186k/2
title: Traits_Communities

description: Binary coding of traits from Table 1 for all species
DOI: 10.5061/dryad.c186k/3
title: Factors_Covariables

description: Factors and co-variables for all sites used in models.
DOI: 10.5061/dryad.d3q4q.2
title: Data from: Examining the occupancy-density relationship for a low-density carnivore
DOI: 10.5061/dryad.d3q4q.2/1.2
title: Fisher detection–non-detection data

description: This text file contains an R-formatted list of data objects for fitting occupancy models in the "unmarked" package.
DOI: 10.5061/dryad.d3q4q.2/3.2
title: Fisher individual encounter data

description: This text file contains an R-formatted list of data objects for fitting spatial capture-recapture models in the "oSCR" package.
DOI: 10.5061/dryad.g780k/1
title: Data Table 1 (Plain text)

description: Surface area of fifth coxal gill and dry body mass of 240 individual amphipods (Gammarus minus) collected from eight freshwater spring populations.
DOI: 10.5061/dryad.gs7fv/1
title: Whole genome profiling of hepatic transcripts altered in Trpm6-deficient mice

description: Excel file contains two worksheets:(1) Genome-wide analysis of hepatic transcriptome in control vs Trpm6-deficient mice.(2) Up- and down-regulated transcripts in the liver of Trpm6-deficient mice with the false discovery rate (FDR) P≤0.1.
DOI: 10.5061/dryad.gs7fv/2
title: Ingenuity Pathway Analysis (IPA) analysis of hepatic transcripts altered in Trpm6-deficient mice

description: Excel file contains two worksheets:(1) IPA Canonical Pathways representing differentially expressed genes in the liver of Trpm6-deficient mice.(2) IPA Causal Networks for differentially expressed genes in the liver of Trpm6-deficient mice.
DOI: 10.5061/dryad.gs7fv/3
title: Metabolic profiling of the serum, liver and gastrocnemius muscle of Trpm6-deficient mice

description: Excel file contains seven worksheets:(1) Statistical analysis of metabolite measurements in serum samples.(2) Statistical analysis of metabolite measurements in gastrocnemius muscle samples.(3) Statistical analysis of metabolite measurements in liver samples.(4) Metabolites significantly changed in serum samples of Trpm6-deficient mice (FDR P≤0.05).(5) Metabolites significantly changed in gastrocnemius muscle samples of Trpm6-deficient mice (FDR P≤0.05).(6) Metabolites significantly changed in liver samples of Trpm6-deficient mice (FDR P≤0.05).(7) Abbreviations of metabolites.
DOI: 10.5061/dryad.gs7fv/4
title: MATLAB code

description: MATLAB code used for statistical analysis of survival distributions of control and dietary treated mice
DOI: 10.5061/dryad.jk578/1
title: Langin et al. Behavioral Ecology - data archive

description: This spreadsheet contains vocalization data and associated location, morphology, and habitat information.
DOI: 10.5061/dryad.p8j38/1
title: Scavenging wolf's prey

description: The file contains the fate of a number of prey of wolves in the Northern Apennines (Italy). Each prey is identified in column ID. Then there are 4 columns indicating location and habitat. Then the date, the killed animal , its cutting yield in Kg., the species of consumer, group size, time of arrival and time of departure. Finally we report the amount of meat consumed (absent=n, scarce=s, medium=m, high=r)
DOI: 10.5061/dryad.q82kn/1
title: metadata file

description: Metadata file describing samples in this study.
DOI: 10.5061/dryad.q82kn/2
title: denoised sequences

description: FASTA file of sequences following processing of .sff files with Ampliconnoise in QIIME. Each sequence is labelled as &gt;sample.no_sequence.no, where sample.no corresponds to the original .sff file names, and sequence.no is sequential within each sample.
DOI: 10.5061/dryad.qj8gh/1
title: Hardwood sapling composition of north-eastern forests

description: The data file contains response and explanatory variables of the analysis for sapling occurrence, absolute, and relative abundances of major hardwood species of north-eastern USA forests.
DOI: 10.5061/dryad.rs245/1
title: OD readings taken during the selection experiment

description: This file contains the optical density ("absorbance") measurements made at the end of each asexual and each sexual cycle during the course of the selection experiment. "Reproduction": mode of reproduction of the experimental line; "Environment": environment of selection; "History": genetic history of the experimental line (3 levels); "Cycle": wether the absorbance was measured at the end of an asexual cycle or at the end of a sexual cycle; "Time": cycle number
DOI: 10.5061/dryad.rs245/2
title: OD readings taken during the ancestral fitness assay

description: This file contains the optical density ("absorbance") measurements of each culture taken during the fitness assay of the ancestral spores. "Environment": assay environment; "History": genetic history of the ancestral spore (3 levels); "Spore": number identifying the spore; "Mt": mating type of the spore; "Replicate": replicate; "Time": time in days; "corrOD": absorbance corrected by the optical density of a well containing media but no cells; "corrLOG10N": the log10 value of the corrected OD measurement
DOI: 10.5061/dryad.rs245/3
title: OD readings taken during the fitness assay of lines evolved in Bolds

description: This file contains the optical density ("absorbance") measurements of each culture taken during the fitness assay of the lines evolved in Bold's. "Selection": whether the spore assayed is ancestral or evolved; "History": the genetic history of the lines (3 levels); "Reproduction": the mode of reproduction of the lines during the selection experiment; "Line": number identifying the line; "Spore": number identifying the spore; "Replicate": replicate culture; "Time": time in days; "corrOD": the optical density value corrected by the OD value of a well with media only; "corrLOG10N": the log10 value of the corrected OD value.
DOI: 10.5061/dryad.rs245/4
title: OD readings taken during the fitness assay of the lines evolved in Herbicides

description: This file contains the optical density ("absorbance") measurements of each culture taken during the fitness assay of the lines evolved in Herbicides. "Selection": whether the spore assayed is ancestral or evolved; "History": the genetic history of the lines (3 levels); "Reproduction": the mode of reproduction of the lines during the selection experiment; "Line": number identifying the line; "Spore": number identifying the spore; "Replicate": replicate culture; "Time": time in days; "corrOD": the optical density value corrected by the OD value of a well with media only; "corrLOG10N": the log10 value of the corrected OD value.
DOI: 10.5061/dryad.rs245/5
title: OD readings taken during fitness assay of lines evolved NaCl

description: This file contains the optical density ("absorbance") measurements of each culture taken during the fitness assay of the lines evolved in NaCl. "Selection": whether the spore assayed is ancestral or evolved; "History": the genetic history of the lines (3 levels); "Reproduction": the mode of reproduction of the lines during the selection experiment; "Line": number identifying the line; "Spore": number identifying the spore; "Replicate": replicate culture; "Time": time in days; "corrOD": the optical density value corrected by the OD value of a well with media only; "corrLOG10N": the log10 value of the corrected OD value.
DOI: 10.5061/dryad.rs245/6
title: OD readings taken during fitness assay of lines evolved inNa2SO4

description: This file contains the optical density ("absorbance") measurements of each culture taken during the fitness assay of the lines evolved in Na2SO4. "Selection": whether the spore assayed is ancestral or evolved; "History": the genetic history of the lines (3 levels); "Reproduction": the mode of reproduction of the lines during the selection experiment; "Line": number identifying the line; "Spore": number identifying the spore; "Replicate": replicate culture; "Time": time in days; "corrOD": the optical density value corrected by the OD value of a well with media only; "corrLOG10N": the log10 value of the corrected OD value.
DOI: 10.5061/dryad.rs245/7
title: growth parameters of ancestral spores

description: This file contains the estimates of growth parameters (maximum growth rate) for the ancestral spores. The growth parameters were estimated by fitting growth models onto the OD readings from the fitness assay. "Environment": the environment in which maximum growth rate was measured; "History": the genetic history of the lines (3 levels); "Spore": number identifying the spore; "Replicate": replicate culture; "Mt": mating type of the spore; "lag", "mumax", "log10N0", "log10Nmax": growth parameters; "growth_model": the model that was fitted to the data to estimate the growth parameters
DOI: 10.5061/dryad.rs245/8
title: growth parameters of evolved and ancestral spores from evolved fitness assay

description: This file contains the estimates of growth parameters (maximum growth rate) for the evolved lines and fastest growing ancestral spores. The growth parameters were estimated by fitting growth models onto the OD readings from the fitness assay. "Environment": the environment in which maximum growth rate was measured; "Selection": whether the spore is ancestral or evolved; "History": the genetic history of the lines (3 levels); "Reproduction": the mode of reproduction of the lines during the selection experiment; "Line": number identifying the experimental line; "Spore": number identifying the spore; "Replicate": replicate culture; "Mt": mating type of the spore; "lag", "mumax", "log10N0", "log10Nmax": growth parameters; "growth_model": the model that was fitted to the data to estimate the growth parameters
DOI: 10.5061/dryad.sc6bb/1
title: Individual genotypes of earthworms from Normandy (France)

description: The individual genotypes of 440 Allolobophora chlorotica specimens obtained using 8 microsatellite markers in 14 populations and the individual genotypes  of 519 Aporrectodea icterica specimens obtained using 7 microsatellite markers in 19 populations are given.
DOI: 10.5061/dryad.t4h50/1
title: CR13_Master_database

description: This spreadsheet contains the raw data for our beetle rearing experiment. The file contains Cerambycid Subfamily, Cerambycid Tribe, Cerambycid Species, Cerambycid Code, Forest Stage, Host Plant Family, Host Plant Species, Host Plant Individual, Stratum, Diameter, Emergence Date and Host Plant Coordinates for each cerambycid individual reared.
DOI: 10.5061/dryad.tc29r/1
title: Walker_qPCR_data

description: The zipped folder contains all qPCR profile files with corresponding labels to the manuscript.
DOI: 10.5061/dryad.10nk0/1
title: Estimates of population density and operational sex ratio

description: Individual estimates of population density (individuals/m2) and operational sex ratio (proportion of males among all individuals) for each of our 10 focal species. The date indicates the first of three consecutive days of data collection for each estimate.
DOI: 10.5061/dryad.10nk0/2
title: Genbank accession numbers

description: Genbank accession numbers for the gene sequences used to generate the phylogeny
DOI: 10.5061/dryad.10nk0/3
title: Species-specific data

description: Species-specific data of all 30 species, including morphological data, mating system (monandry, polyandry), temporal breeding pattern (explosive breeder, prolonged breeder), oviposition site (aquatic, terrestrial/arboreal), and male competition and female choice (yes, no).
DOI: 10.5061/dryad.10nk0/4
title: Phylogeny

description: Phylogeny with branch lengths of the 30 anuran species used.
DOI: 10.5061/dryad.10nk0/5
title: Morphological data of individual males of 10 focal species

description: Morphological data (body mass, testes mass, forelimb muscle mass) of all males males used to calculate intra-specific allometries.
DOI: 10.5061/dryad.12d36/1
title: Scottish Baseline SNP Panel

description: Raw genotypes for the baseline SNP panel developed for Scotland and NE England.
DOI: 10.5061/dryad.1sm3f/1
title: Data supporting results in Figures 1-3, main text, and supplementary figures

description: This data file contains the data supporting the results of the paper: He et al. Natural enemies govern ecosystem resilience in the face of extreme droughts. Ecology Letters. All codes of treatments, sites, years, response measures are consistent with those described in the paper. Please refer to the paper for details of the experimental treatments and methods.
DOI: 10.5061/dryad.27114/1
title: species_level_tree_HR

description: as per figure 4 of the paper, except high resolution with more complete labeling. png image format.
DOI: 10.5061/dryad.27114/15
title: Online_Supplemental_Document_PDF

description: Online Supplement. PDF format. Contains supplementary methods, results, discussion, references, figures and tables.
DOI: 10.5061/dryad.2cf46/1
title: Hanetal.2017.JEcol
DOI: 10.5061/dryad.2j8jr/1
title: Chromsomal Analysis

description: Figures with results of chromosomal analysis
DOI: 10.5061/dryad.37k44/1
title: Emsens et al. Datafile

description: This file contains data of the field survey, vegetation relevees and the mesocosm experiment (3 tabs).
DOI: 10.5061/dryad.484m0/1
title: Migratory restlessness data from stonechats with example processing scripts

description: This zip archive contains nocturnal and diurnal activity data (and associated metadata) from stonechats. Also included are example data processing scripts.
DOI: 10.5061/dryad.73h36/1
title: Trudelle_et_al_data
DOI: 10.5061/dryad.73tf8/1
title: LMER_data

description: This file contains the data for linear mixed effects models (LMER in R) with the variables: subject, viewing distances 40, 30, 24 cm, session 1 and 2, repetition 1, 2, 3 and 4 per session, heterophoria, objective fixation disparity, subjective fixation disparity, relative vergence stimulus.
DOI: 10.5061/dryad.73tf8/2
title: Coefficients of robust regression

description: This file contains the coefficients of the robust regression (lmrob in R) which provides the intercept  (dependent variable at 30 cm viewing distance) and the slope (change in the dependent variable with viewing distance) as shown in Fig. 4. These coefficients are based on the data of each session. The three dependent variables were objective fixation disparity, subjective fixation disparity and heterophoria. Additional variables for Fig. 8 refer to the accommodative performance: the AC/A ratio  and the accommodative response at 30 cm viewing distance.
DOI: 10.5061/dryad.7ns5c/1
title: MC-sample1-HDL-AM

description: Admixture Mapping results for HDL-cholesterol: Mexico City sample 1
DOI: 10.5061/dryad.7ns5c/2
title: MC-sample1-LDL-AM

description: Admixture Mapping results for LDL-cholesterol: Mexico City sample 1
DOI: 10.5061/dryad.7ns5c/3
title: MC-sample1-TCHOL-AM

description: Admixture Mapping results for Total-cholesterol: Mexico City sample 1
DOI: 10.5061/dryad.86sk5/1
title: GrasonAmNat2016ModelEstimates

description: - Table 8. Parameter estimates, estimated SE, and effect size (estimate/SE) for each hypothesis test, derived from best fit Generalized linear mixed effects model for each species.
	Fields:
	1. Species: genus name of species tested
	2. native: status as native or non-native
	3. test: descriptive name of hypothesis test
	4. x: Hypothesis test number
	5. estimate: estimated coefficient for parameter or contrast in GLMER
	6. se: estimated standard error for parameter estimate from GLMER
	7. effect: Effect size calculated as estimate/se for parameter/contrast
DOI: 10.5061/dryad.86sk5/2
title: GrasonAmNat2016AliaData

description: Tables 1-7. Observed behavior of Alia carinata in response to cues from Cancer productus from 1 of 7 experiments.

	Fields: 
	1. Date - Date of observation
	2. bin - replicate
	3. tmt - Cue Treatment (as described and abbreviated in table 1 of Grason AmNat, 		with the exception that the letter “P” is used in the manuscript to stand for Predator cues, while in these files “C” is used to stand in for Crab, thus “CxIC” here is the Crab consuming conspecific prey)
	4. crab - Presence of crab/predator cues in cue treatment (Y/N)
	5. ic - presence of chemical cues from injured conspecifics in cue treatment (Y/N)
	6. hide/hiding - how many snails were “hiding” under structure in bin on that observation date, total number of snails in bin is 1 unless otherwise listed in Table 2 of manuscript
	7. run/running - how many snails were attempting to “flee” by emersing on that date
	8. both - sum of “run” and “hide” 
	9. cum.hide - cumulative number of “hide” observations for that bin to date, used for calculating best metric of avoidance.
	10. cum. run - as above for emersion behavior
	11. cum.both - as above for sum of run and hide
	12. no.snails (in some tables) - total number of snails in bin on which behavioral obs were made
	13. #notes (in some tables) - detailed related to removal of snails due to death.
	14. cum.obs (in Alia only) - total number of snail*observations for a given bin
DOI: 10.5061/dryad.86sk5/3
title: GrasonAmnat2016BatillariaData

description: Tables 1-7. Observed behavior of Batillaria attramentaria in response to cues from Cancer productus from 1 of 7 experiments.

	Fields: 
	1. Date - Date of observation
	2. bin - replicate
	3. tmt - Cue Treatment (as described and abbreviated in table 1 of Grason AmNat, 		with the exception that the letter “P” is used in the manuscript to stand for Predator cues, while in these files “C” is used to stand in for Crab, thus “CxIC” here is the Crab consuming conspecific prey)
	4. crab - Presence of crab/predator cues in cue treatment (Y/N)
	5. ic - presence of chemical cues from injured conspecifics in cue treatment (Y/N)
	6. hide/hiding - how many snails were “hiding” under structure in bin on that observation date, total number of snails in bin is 1 unless otherwise listed in Table 2 of manuscript
	7. run/running - how many snails were attempting to “flee” by emersing on that date
	8. both - sum of “run” and “hide” 
	9. cum.hide - cumulative number of “hide” observations for that bin to date, used for calculating best metric of avoidance.
	10. cum. run - as above for emersion behavior
	11. cum.both - as above for sum of run and hide
	12. no.snails (in some tables) - total number of snails in bin on which behavioral obs were made
	13. #notes (in some tables) - detailed related to removal of snails due to death.
DOI: 10.5061/dryad.86sk5/4
title: GrasonAmNat2016IlyanassaData

description: Tables 1-7. Observed behavior of Ilyanassa obsoleta in response to cues from Cancer productus from 1 of 7 experiments.

	Fields: 
	1. Date - Date of observation
	2. bin - replicate
	3. tmt - Cue Treatment (as described and abbreviated in table 1 of Grason AmNat, 		with the exception that the letter “P” is used in the manuscript to stand for Predator cues, while in these files “C” is used to stand in for Crab, thus “CxIC” here is the Crab consuming conspecific prey)
	4. crab - Presence of crab/predator cues in cue treatment (Y/N)
	5. ic - presence of chemical cues from injured conspecifics in cue treatment (Y/N)
	6. hide/hiding - how many snails were “hiding” under structure in bin on that observation date, total number of snails in bin is 1 unless otherwise listed in Table 2 of manuscript
	7. run/running - how many snails were attempting to “flee” by emersing on that date
	8. both - sum of “run” and “hide” 
	9. cum.hide - cumulative number of “hide” observations for that bin to date, used for calculating best metric of avoidance.
	10. cum. run - as above for emersion behavior
	11. cum.both - as above for sum of run and hide
	12. no.snails (in some tables) - total number of snails in bin on which behavioral obs were made
	13. #notes (in some tables) - detailed related to removal of snails due to death.