cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive170066.20251217.10
title: Zooshikella harenae Pira et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/nwp9nrtds7.1
title: Nitrogen cycling perturbations and their linkages to the biological evolution in the Ediacaran–Cambrian transition, South China

description: High-resolution carbonate carbon isotope (δ¹³Ccarb), bulk nitrogen isotope (δ¹⁵N), biogenic silica (BSi), TOC, and TN data from the YD-4 drill core, South China, spanning the Dengying to Yanjiahe formations across the Ediacaran–Cambrian boundary.
DOI: 10.57702/roxgsrij
title: Douban dataset

description: The dataset used in the paper is a real-world social network dataset, containing 13,777 nodes, 567,250 edges, and 21,756 cascades.
DOI: 10.13145/bacdive170067.20250331.9.3
title: Aestuariirhabdus haliotis Zhang et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170067.20251217.10
title: Aestuariirhabdus haliotis Zhang et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170068.20240510.9
title: Salicola salis Kharroub et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170068.20251217.10
title: Salicola salis Kharroub et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/xwv0q4sp
title: Dream2

description: Two publicly available digital mammography datasets used for training and performance validation of the compression engines.
DOI: 10.13145/bacdive170069.20250331.9.3
title: Thalassolituus alkanivorans Wei et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170069.20251217.10
title: Thalassolituus alkanivorans Wei et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170070.20250331.9.3
title: Marinomonas lutimaris Gao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/6iprc8p8
title: Automatic Analysis of Rhythmic Poetry

description: Automatic analysis of rhythmic poetry with applications to generation and translation.
DOI: 10.13145/bacdive170070.20251217.10
title: Marinomonas lutimaris Gao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170071.20250331.9.3
title: Oceanobacter mangrovi Huang et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170071.20251217.10
title: Oceanobacter mangrovi Huang et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/78fx27hm
title: FairSeg

description: A recent study FairSeg proposes the first fairness dataset for medical segmentation, including 10,000 SLO fundus images from 10,000 patients with pixel-wise disc and cup segmentation mask annotation.
DOI: 10.13145/bacdive170072.20250331.9.3
title: Providencia manganoxydans Li et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170072.20251217.10
title: Providencia manganoxydans Li et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170073.20250331.9.3
title: Photorhabdus antumapuensis Castaneda-Alvarez et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170073.20251217.10
title: Photorhabdus antumapuensis Castaneda-Alvarez et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/9ynbc483
title: Iterative Vision-and-Language Navigation in Continuous Environments

description: Iterative Vision-and-Language Navigation in Continuous Environments (IR2R-CE) benchmark for evaluating language-guided agents navigating in a persistent environment over time.
DOI: 10.13145/bacdive170074.20250331.9.3
title: Brenneria tiliae Kile et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/hsh6r78r5d
title: NAD

description: Background:
--------------
Nicotinamide adenine dinucleotide (NADH) is a ubiquitous redox cofactor that participates in a wide range of enzymatic and regulatory processes. These include metabolism, signalling, and diseases such as cancer and neurodegeneration. Our work presents a comprehensive computational structural analysis of NADH recognition across protein families using 345 NADH-bound crystal structures from the Protein Data Bank. Our study establishes a unified biophysical framework that links NADH shape, interaction signatures, and protein context, providing rational insights for cofactor engineering and the design of NADH-targeted inhibitors.

Content Description: 
------------------------
This dataset contains: (1) code repository (2) Input datasets
The code repository provides:
(a) Configuration file (/generator/NAIConfig.py) 
(b) Code (/generator/NAICofactor.py) for generating statistics around NAI (a three-letter identifier for Nicotinamide adenine dinucleotide in the Protein Data Bank) and its interactions with proteins corresponding to six groups of protein-NAI interaction complexes having six distinct shapes.
Input datasets: (/groups/):
RCSB PDB ids of six different groups of NADH interaction complexes, corresponding to six distinct shapes of the 3-dimensional structures of these complexes

Other Data Used in the Computation:
-----------------------------------------------------
(1) RCSB PDB Coordinate files: Retrieved from RCSB PDB (https://www.rcsb.org/)
(2) Protein-Ligand Interaction Profile (PLIP) reports (retrieved programmatically using PLIP utility (https://github.com/pharmai/plip))

Tools and Databases/Resources Used:
-----------------------------------------
(1) PLIP: PLIP: fully automated protein–ligand interaction profiler - PMC, (n.d.). https://pmc.ncbi.nlm.nih.gov/articles/PMC4489249/#_ad93_
(2) Open Babel: N. M O'Boyle, M. Banck, C. A. James, C. Morley, T. Vandermeersch and G. R. Hutchison, Open Babel: An open chemical toolbox. J Cheminform. 2011 Oct 7;3:33. https://doi.org/10.1186/1758-2946-3-33.
(3) Biopython: P. J. A. Cock, T. Antao, J. T. Chang, B. A. Chapman, C. J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski and M. J. L. de Hoon, Biopython: freely available Python tools for computational molecular biology and bioinformatics, Bioinformatics, Volume 25, Issue 11, June 2009, Pages 1422–1423. https://doi.org/10.1093/bioinformatics/btp163.
(4) Standard Python packages
DOI: 10.13145/bacdive170074.20251217.10
title: Brenneria tiliae Kile et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170075.20241212.9.2
title: Salmonella paratyphi (ex Kayser 1902) Ezaki et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/hsh6r78r5d.1
title: NAD

description: Background:
--------------
Nicotinamide adenine dinucleotide (NADH) is a ubiquitous redox cofactor that participates in a wide range of enzymatic and regulatory processes. These include metabolism, signalling, and diseases such as cancer and neurodegeneration. Our work presents a comprehensive computational structural analysis of NADH recognition across protein families using 345 NADH-bound crystal structures from the Protein Data Bank. Our study establishes a unified biophysical framework that links NADH shape, interaction signatures, and protein context, providing rational insights for cofactor engineering and the design of NADH-targeted inhibitors.

Content Description: 
------------------------
This dataset contains: (1) code repository (2) Input datasets
The code repository provides:
(a) Configuration file (/generator/NAIConfig.py) 
(b) Code (/generator/NAICofactor.py) for generating statistics around NAI (a three-letter identifier for Nicotinamide adenine dinucleotide in the Protein Data Bank) and its interactions with proteins corresponding to six groups of protein-NAI interaction complexes having six distinct shapes.
Input datasets: (/groups/):
RCSB PDB ids of six different groups of NADH interaction complexes, corresponding to six distinct shapes of the 3-dimensional structures of these complexes

Other Data Used in the Computation:
-----------------------------------------------------
(1) RCSB PDB Coordinate files: Retrieved from RCSB PDB (https://www.rcsb.org/)
(2) Protein-Ligand Interaction Profile (PLIP) reports (retrieved programmatically using PLIP utility (https://github.com/pharmai/plip))

Tools and Databases/Resources Used:
-----------------------------------------
(1) PLIP: PLIP: fully automated protein–ligand interaction profiler - PMC, (n.d.). https://pmc.ncbi.nlm.nih.gov/articles/PMC4489249/#_ad93_
(2) Open Babel: N. M O'Boyle, M. Banck, C. A. James, C. Morley, T. Vandermeersch and G. R. Hutchison, Open Babel: An open chemical toolbox. J Cheminform. 2011 Oct 7;3:33. https://doi.org/10.1186/1758-2946-3-33.
(3) Biopython: P. J. A. Cock, T. Antao, J. T. Chang, B. A. Chapman, C. J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski and M. J. L. de Hoon, Biopython: freely available Python tools for computational molecular biology and bioinformatics, Bioinformatics, Volume 25, Issue 11, June 2009, Pages 1422–1423. https://doi.org/10.1093/bioinformatics/btp163.
(4) Standard Python packages
DOI: 10.57702/phpfbw4g
title: InsuranceQA

description: The InsuranceQA dataset is a question answering dataset containing questions and answers.
DOI: 10.13145/bacdive170075.20251217.10
title: Salmonella paratyphi (ex Kayser 1902) Ezaki et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170076.20250331.9.3
title: Symbiopectobacterium purcellii Nadal-Jimenez et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170076.20251217.10
title: Symbiopectobacterium purcellii Nadal-Jimenez et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/rz6435yzds
title: McDonald’s relabeling expired food incident.

description: On May 13, 2024, a report titled "McDonald’s Alters Expiration Date Labels and Uses Expired Ingredients'' by the Beijing News sparked public attention and discussion. Following investigations by the Municipal Market Supervision Bureau and an official apology from McDonald’s China, the incident was resolved by May 16. This study collected data from Weibo using a Python crawler with the search terms "McDonald’s Relabels Expired Ingredients'' and "McDonald’s China Apology'' The collection window was set from May 13 to 16, 2024, covering the complete lifecycle of the incident, from its outbreak to resolution. The final dataset of 850 Weibo posts.
DOI: 10.57702/0u4duviu
title: Heightmap and ACE Evaluation Dataset

description: A dataset of heightmaps and corresponding ACE evaluations to train a machine learning model to predict ACE values.
DOI: 10.13145/bacdive170077.20250331.9.3
title: Huaxiibacter chinensis He et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive170077.20251217.10
title: Huaxiibacter chinensis He et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.zd3bue
title: Occurrence Download

description: A dataset containing 604 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilypnus gilberti (Eigenmann & Eigenmann, 1889)"
 ]
}

 The dataset includes 604 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037373-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93x6jp
title: Occurrence Download

description: A dataset containing 3232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apuleia leiocarpa (Vogel) J.F.Macbr."
 ]
}

 The dataset includes 3232 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055646-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfkfbr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-87.8708471000000060 41.8653241000000023, -87.8708471000000060 41.8656758899999986, -87.8708471000000060 41.8656905499999965, -87.8708471000000060 41.8657198599999987, -87.8708471000000060 41.8657638299999988, -87.8708471000000060 41.8661596000000031, -87.8708471000000060 41.8662768599999993, -87.8708471000000060 41.8668192000000019, -87.8708471000000060 41.8672003000000004, -87.8704524099999986 41.8672003000000004, -87.8699261699999994 41.8672003000000004, -87.8693853000000047 41.8672003000000004, -87.8693853000000047 41.8671123499999993, -87.8693853000000047 41.8668778300000000, -87.8693853000000047 41.8665407000000016, -87.8693853000000047 41.8662035700000033, -87.8693853000000047 41.8656026000000026, -87.8693853000000047 41.8654413599999984, -87.8693853000000047 41.8654120500000033, -87.8693853000000047 41.8653241000000023, -87.8697799899999978 41.8653241000000023, -87.8701015799999965 41.8653241000000023, -87.8704231800000031 41.8653241000000023, -87.8708471000000060 41.8653241000000023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086749-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycbkx3
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saurida pseudotumbil Dutt & Sagar, 1981"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037374-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq9atb
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchorhamphus naga Collette, 1976"
 ]
}

 The dataset includes 76 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055647-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcpk4v
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinophoria wyvillei (R.B.Watson, 1886)"
 ]
}

 The dataset includes 116 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086746-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhbcjj
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vexillum stainforthii (Reeve, 1842)"
 ]
}

 The dataset includes 108 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103480-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7taw4
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Faxonius occidentalis (Johnson, 2010)"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055638-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8kgyj
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Lagidium viscacia (Molina, 1782)"
 ]
}

 The dataset includes 233 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086750-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e45jdd
title: Occurrence Download

description: A dataset containing 32900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca altissima All.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32900 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037522-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uff4g8
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Faxonius nais (Faxon, 1885)"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055651-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zf8c6m
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elachisina floridana (Rehder, 1943)"
 ]
}

 The dataset includes 90 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086759-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvfqck
title: Occurrence Download

description: A dataset containing 19059506 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Rosaceae)"
 ]
}

 The dataset includes 19059506 records from 5071 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161418-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svksq7
title: Occurrence Download

description: A dataset containing 208327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-12-13",
 "EventDate is less than or equal to 2026-01-12",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 208327 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080302-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3gauy
title: Occurrence Download

description: A dataset containing 617381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Elateridae"
 ]
}

 The dataset includes 617381 records from 1417 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080298-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3081233/2546576
title: Data for EMSL Project 60201 from April 2024
DOI: 10.25582/data.2024-04.3081234/2546577
title: Data for EMSL Project 60201 from April 2024
DOI: 10.25582/data.2024-04.3081235/2546578
title: Data for EMSL Project 60201 from April 2024
DOI: 10.5281/zenodo.15134152
title: Table 1 in Tomoceridae (Collembola, Entomobryomorpha) from the southern Annamitic cordillera: redescription of Tomocerus ocreatus Denis, 1948 and description of a new species of Tomocerina Yosii, 1955

description: Table 1. Discrimination between Tomocerina annamitica sp. nov. and Tomocerina purpurithora Liu, Hou & Li, 1999.
SpeciesNumber of tibiotarsal strong inner chaetaeNumber of chaetae on tenaculumDental spines formulaNumber of intermediate teeth on mucroT. annamitica sp. nov.5–7, 4, 5–614/3, I0T. purpurithora0, 0, 155/7, 15–7
description: Published as part of Yu, Daoyuan, Man, Le Cong & Deharveng, Louis, 2016, Tomoceridae (Collembola, Entomobryomorpha) from the southern Annamitic cordillera: redescription of Tomocerus ocreatus Denis, 1948 and description of a new species of Tomocerina Yosii, 1955, pp. 11 in European Journal of Taxonomy 176 on page 11, DOI: 10.5852/ejt.2016.176, http://zenodo.org/record/3832758