cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.94343
title: Research data supporting 'Obesity risk factors in British Labrador retrievers: Effect of sex, neuter status, age, chocolate coat colour and food motivation'

description: Demographic data for a British population of Labrador retrievers including obesity-related phenotypes. This data is associated with research article 'Obesity risk factors in British Labrador retrievers: Effect of sex, neuter status, age, chocolate coat colour and food motivation'. Dogs and dog owners were recruited as previously described (Raffan, E., et al. "A deletion in the canine POMC gene is associated with weight and appetite in obesity-prone Labrador retriever dogs." Cell metabolism 23, no. 5 (2016): 893-900.). Data underwent quality control to ensure only dogs with reliable obesity phenotypes remained.
DOI: 10.17863/cam.112548
title: Causal Gene Prioritization Across Diverse Diseases Through Multi-Omic Data Integration - Supplementary Tables

description: The files contain supplementary tables for PhD thesis titled "Causal Gene Prioritization Across Diverse Diseases Through Multi-Omic Data Integration" by Mine Koprulu. Further details about the analyses performed can be found within the methods and results section of the relevant chapters in the thesis. Supplementary tables for Chapter 2 mainly include quality control measures, annotations and summary statistics from the rare variant analysis for body fat distribution. Supplementary tables for Chapter 3 mainly include results from the genomic analysis of measurements from a recent antibody-based proteomics platform and the clinical relevance of the identified pQTLs. Supplementary tables for Chapter 4 mainly include genome-wide characterization and phenotypic consequences of protein quantitative trait loci through a large-scale international meta-analysis. Supplementary tables for Chapter 5 mainly include summary statistics and results from systematic investigation of proteogenomic variation between sexes and its relevance for human diseases.
DOI: 10.17863/cam.10462
title: Research data supporting "Optimising collagen scaffold architecture for enhanced periodontal ligament fibroblast migration"

description: The following data files are provided: • I2 & A2: These are .tif files containing binarised Micro-CT image stacks for scaffolds I2 and A2 respectively. The image stack is 550 pixels across in all dimensions, where 1 pixel = 3.74 µm. NB: Corresponding .tif files for scaffolds I1 and A1 are available as supporting data at https://www.repository.cam.ac.uk/handle/1810/252372. • Real-time videos: A .zip file containing the movies of single cell migration in each scaffold, from which cell velocity was measured. Files for scaffolds A1 and A2 are labelled as “isotropic” or “anisotropic” according to whether the image plane contains long range pore wall alignment. • Invasion data: A .zip file containing the fluorescent and corresponding bright field images of each scaffold cross-section at day 3 and day 7 after seeding. • Collated data: An excel file containing the measurements of pore size and percolation diameter taken from the Micro-CT files listed above, cell velocities measured from the movies listed above, and cell position/orientation index measured from the fluorescent/bright field images listed above.
DOI: 10.17863/cam.39741
title: Research data supporting "Co-registration of Optoacoustic Tomography and Magnetic Resonance Imaging data from murine tumour models"

description: This dataset contains processed MRI and MSOT images to reproduce the analysis. MRI images were acquired on a 9.4T Agilent MRI machine. MSOT images were acquired using an iThera inVision TF-256 machine. .mat files are provided which contain images as matrices with corresponding co-registration landmarks and more. For each mouse included in this study, the following files are included: 1. .mat file containing a structure with the following entries: - Multispectrally processed MSOT images - MRI images - Acquisition date and mouse identifier - Tumor structures with the flank side and a manually drawn tumor contour 2. .mat file with the mouse body regions of interest (manually drawn body contours) for MSOT and MRI images 3. Registration landmarks for MSOT and MRI which are used in the primary step of co-registration. 4. Tumor-specific registration for MSOT and MRI which are used in the secondary step of co-registration 5. Tumor-specific contours (manually drawn) for MSOT and MRI images. We also include the .stl files for 3D printing of the novel mouse holder which is demonstrated in the publication.mat More comprehensive information on data acquisition is provided in the manuscript. Usage of individual files is demonstrated in the code provided on GitHub.
DOI: 10.17863/cam.63232
title: Research data supporting "A technique for improving dispersion within polymer-glass composites using polymer precipitation"

description: Particle size distribution data measured by dynamic light scattering for coarse glass powder and fine (attritor milled) glass powder (Fig02). Contains Microsoft Excel .xlsx files and .txt files with particle size distributions, as well as script and data files for generating plots (.txt). Raw SEM images (.tif) of coarse and fine glass powder are also included. Results from X-ray micro-computed tomography 3D object analysis (Fig03) are supplied in Microsoft Excel .xlsx files. For composites made using films and precipitate, three volumes of interest (VOIs) are shown in separate .xlsx files. Object analysis results are combined into one .xlsx files for each composite condition to generate an average object size distribution, which is exported to a .txt file. μCT slice images and SEM images of composites fabricated from composite films and precipitate are also included in .png format. Script files for generating figures are also included (.txt). Mechanical testing data from tensile tests of composites fabricated from composite films and precipitate (Fig04). Tests were carried out in 37°C water. Contains .txt files with example stress-strain curves, as well as script and data files for generating plots (.txt). Digital photographs (.png files) of samples before and after tensile failure are also included. Plots are generated using gnuplot (www.gnuplot.info),
DOI: 10.17863/cam.101482
title: Data for "Necking and Failure of a particulate gel strand: signatures of yielding on different length scales"

description: This dataset contains the files needed to reproduce all the data/figures of the manuscript. The underlying data is reproduced using LAMMPS where one can vary the input variables to correspond those denoted in the manuscript. Supporting data including (i) input files for lammps molecular simulation (ii) code and example input for stress computation (iii) matlab scripts used for data analysis and figures. Refer to README files in each folder.
DOI: 10.15468/dl.a8kth3
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platacanthomys lasiurus Blyth, 1859"
 ]
}

 The dataset's 1 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037603-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.20379
title: Research Data Supporting "Natural variation in Arabidopsis shoot branching plasticity in response to nitrate supply affects fitness"

description: This repository contains all data and analysis scripts used in this publication. There are three compressed folders (in .zip format). "data.zip" contains all the raw data files. The directory contains a README file, with a description of all the data files. "data_processed.zip" contains processed data files required to reproduce figures in the paper. As above, there is a README file, with a description of each file. "publication_deJong2019_Nplasticity-0.1.0.zip" contains the analysis scripts used for the analysis. These are also available from: https://github.com/tavareshugo/publication_deJong2019_Nplasticity. We advise that you get the latest version of the code from there. The README contains instructions of how the directory structure should be organised.
DOI: 10.17863/cam.102114
title: Research Data supporting "Data-Driven Model of an EDFA Using Gaussian Processes with Aging Detection"

description: This data related to a research project involving erbium-doped fibre amplifier modelling using different machine learning methods. The data was primarily collected as outputs from machine learning models being run to predict amplifier gain. The mean absolute error of the models were collected and collated into the dataset for graphical purposes. No processing was done on the data, this data is raw measurements from the model.
DOI: 10.17863/cam.72098
title: Data related to "The High-Risk Type 1 Diabetes HLA-DR and HLA-DQ Polymorphisms Are Differentially Associated With Growth and IGF-I Levels in Infancy: The Cambridge Baby Growth Study"

description: Dataset used for the original article "The high-risk type 1 diabetes HLA-DR and HLA-DQ polymorphisms are differentially associated with growth and IGF-1 levels in infancy: the Cambridge Baby Growth Study" published in Diabetes Care, Vol 44, August 2021. Uncompressed Microsoft 2013 (.xlsx) file (587 rows including headers and 52 columns) containing data collected as part of the Cambridge Baby Growth Study between 2001 and 2009. Study participants were recruited from pregnancy clinics at the Rosie Maternity Hospital, Cambridge at the first routine antenatal clinic appointment at around 12 weeks of gestation. Anthropometric assessments of the infant's size and adiposity (weight, length, skinfold thickness) were collected by trained research paediatric nurses at a minimum of one study visit scheduled within 8 days of birth and at ages 3, 12, 18, and 24 months. Samples of umbilical cord blood collected at delivery or infancy capillary blood collected at a study visit were used for DNA extraction and/or assaying hormones (IGF-1, IGFBP-3). Newborn index (sex, gestational age, birth weight, singleton or twin), maternal anthropometry (pre-pregnancy weight and height), maternal presence of type 1 diabetes, parity, maternal smoking in pregnancy, parental ages, and mode of infant feeding at age 3 months were self-reported and collected as part of pregnancy and post-pregnancy questionnaires. An index of multiple deprivation was calculated by researchers based on self-reported demographic data. HLA tag single nucleotide polymorphisms (rs17426593 for DRB1*04, rs2187668 for DRB1*03, and rs7454108 for DQB1*03:02) were genotyped in 612 infants who had DNA available using Kompetitive Allele Specific PCR genotyping assay by LGC Genomics.
DOI: 10.5281/zenodo.14505878
title: A global map of human presence in 2017

description: Understanding global patterns of human presence is crucial for monitoring anthropogenic pressures on ecological integrity, optimizing tourism management, and informing decision-making in various domains. However, existing datasets on human presence are insufficient and primarily limited to local scales.

We combined massive geotagged microblogs and multi-covariates to infer the global human presence in 2017 at a fine spatial resolution of 0.01 degrees. Specifically, we proposed a Human Presence Indicator (HPI) to quantify human presence. It categorizes the intensity of human presence at a location in four levels based on year-long statistics of geotagged data. HPI-0, HPI-1, HPI-2, and HPI-3 represent no human presence, occasional/frequent/sustained human presence, respectively.

The model achieved a macro-F1 score of 0.72 on a test set comprising over 1.9 million grids in China and 0.84 on manually labeled samples worldwide. Cross-validation with external datasets, including geotagged social media data from X and global human settlement and population data, corroborated the model's effectiveness.

The related article is currently under review.
DOI: 10.5281/zenodo.8172735
title: A global map of human visitation in 2017

description: Understanding global patterns of human visitation is crucial for monitoring anthropogenic pressures on ecological integrity, optimizing tourism management, and informing decision-making in various domains. However, existing datasets on human visitation are insufficient and primarily limited to local scales.

We combined massive geotagged microblogs and multi-covariates to infer the global human visitation in 2017 at a fine spatial resolution of 0.01 degrees. Specifically, we proposed a Classified Visitation Indicator (CVI) to quantify human visitation. It categorizes the intensity of human visitation at a location in four levels based on year-long statistics of geotagged data. CVI-0, CVI-1, CVI-2, and CVI-3 represent never visited grids, rarely visited grids, frequently visited grids, and consistently visited grids, respectively.

The model achieved a macro-F1 score of 0.72 on a test set comprising over 1.9 million grids in China and 0.84 on manually labeled samples worldwide. Cross-validation with external datasets, including geotagged social media data from X and global human settlement and population data, corroborated the model's effectiveness.

The related article is currently under review.
DOI: 10.15468/dl.7d5s2c
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Spain",
 "Geometry POLYGON((-7.14716 36.21988,0.26159 36.21988,0.26159 39.18614,-7.14716 39.18614,-7.14716 36.21988))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus mykiss (Walbaum, 1792)"
 ]
}

 The dataset includes 114 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037611-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14504816
title: Free Drinking Water, Sanitation, and Hygiene Access for Pedestrians in Dhaka North City Corporation

description: This dataset contains 601 observations on the Free Drinking Water, Sanitation, and Hygiene Access (FDWSHA) for pedestrians in the Dhaka North City Corporation area. Data was collected from 5 different locations (Gulshan, Firmgate, Gabtali, Kawran Bazar, Uttara) within the area. This dataset is intended to be used for research on urban sanitation and public health.
DOI: 10.5281/zenodo.14504817
title: Free Drinking Water, Sanitation, and Hygiene Access for Pedestrians in Dhaka North City Corporation

description: This dataset contains 601 observations on the Free Drinking Water, Sanitation, and Hygiene Access (FDWSHA) for pedestrians in the Dhaka North City Corporation area. Data was collected from 5 different locations (Gulshan, Firmgate, Gabtali, Kawran Bazar, Uttara) within the area. This dataset is intended to be used for research on urban sanitation and public health.
DOI: 10.15468/dl.gkaps4
title: Occurrence Download

description: A dataset containing 20989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Udenus Brunner von Wattenwyl, 1900, Tropidischia Scudder, 1862, Troglophilus Krauss, 1879, Talitropsis Bolívar, 1882, Spelaeiacris Péringuey, 1916, Rhaphidophora Serville, 1838, Pleioplectron Hutton, 1896, Parvotettix Richards, 1968, Parudenus Enderlein, 1910, Paratachycines Storozhenko, 1990, Pallidoplectron Richards, 1958, Pachyrhamma Brunner von Wattenwyl, 1888, Micropathus Richards, 1964, Macropathus Walker, 1869, Heteromallus Brunner von Wattenwyl, 1888, Hadenoecus Scudder, 1862, Gammarotettix Brunner von Wattenwyl, 1888, Euhadenoecus Hubbell, 1978, Dolichopoda Bolívar, 1880, Diestrammena Brunner von Wattenwyl, 1888, Diestramima Storozhenko, 1990, Daihinibaenetes Tinkham, 1962, Comicus Brunner von Wattenwyl, 1888, Ceuthophilus Scudder, 1862, Atachycines Furukawa, 1933, Anoplophilus Karny, 1931)"
 ]
}

 The dataset includes 20989 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037610-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.94186
title: Research data supporting "Modelling the spread and mitigation of an emerging vector-borne pathogen: citrus greening in the U.S."

description: Data is comprised of maps of citrus densities, surveillance data for citrus greening (HLB) and for Asian citrus psyllid (ACP) in the Rio Grande Valley Texas, Southern California and the Central Valley California as described and analysed in the parent publication above. HLB surveys were conducted by the U.S. Department of Agriculture and California Department of Food and Agriculture to detect the presence of HLB in citrus trees in California and Texas. ACP presence and spread in California were compiled from several trapping networks, including data sets from the CDFA and the Citrus Pest and Disease Prevention Program. The data were aggregated into data instances identified by containing cell and visit date.$$ \ $$Column headers in the .xlsx files:$$ \ $$1 Gi = the identifying index for each grid cell (Grid index)$$ \ $$2 Glat & Glon = the latitude and longitude for the centre of each grid cell$$ \ $$3 Ct_x = Flag to indicate how many HLB diagnostic samples were available for each grid cell and visit date and the Ct value range they fall into (e.g. Ct = all diagnostic samples, Ct_36 = diagnostic samples with Ct value less than 36)
DOI: 10.6084/m9.figshare.28044758
title: Mitochondrial gene and ribosomal DNA data of 142 insects

description: The dataset included 142 insect mitochondrial genes and ribosomal DNA sequences, including 18S,28S,ITS1, and ITS2. The dataset also includes phylogenetic trees constructed from these datasets by different methods (Maximum likelihood method and Bayesian method).
DOI: 10.6084/m9.figshare.28044758.v1
title: Mitochondrial gene and ribosomal DNA data of 142 insects

description: The dataset included 142 insect mitochondrial genes and ribosomal DNA sequences, including 18S,28S,ITS1, and ITS2. The dataset also includes phylogenetic trees constructed from these datasets by different methods (Maximum likelihood method and Bayesian method).
DOI: 10.17863/cam.60435
title: Research data supporting Dual-Template Approach to Hierarchically Porous Polymer Membranes

description: ‘Fig 3’ contains images (optical and SEM) of control membranes using only F127 as an additive as well as PABA containing images. ‘Fig 4’ contains images (optical and SEM) of membranes prior to and after PABA removal. ‘Fig 5’ contains the text file ‘beer-lambert’. This file shows the maximum absorbance and concentration used to create the beer-lambert plot. This folder also contains UV Vis absorption data of eluent ethanol that samples were stored in. Samples 162 contained PABA. Samples 164 did not contain PABA. txt files give data in the form wavelength (nm), absorption. ‘Conc_calc’ file includes the calculation performed to determine concentration of the eluent. ‘Fig 6’ contains contact angle data for control, PABA containing and membranes PABA has been removed from in the form of csv files of the samples used for analysis in the form absolute time (s), relative time (s), frame number, contact angle (degrees) as the first 4 columns. ‘d’ suffix denotes the dull side of the sample. ‘s’ suffix denotes the shiny side of the sample. JPEG images of the samples are also included. ‘Permeability’ contains the data from flow-rate experiments and pore size measurements in a text file. Data are listed as given as follows: Sample Name, Permeability Experiment Run 1 (mlmin-1), Permeability Experiment Run 2 (mlmin-1), Permeability Experiment Run 3 (mlmin-1), Average flow rate from permeability experiments (mlmin-1), Error in average (mlmin-1), Sample thickness (μm), Test Area (mm2), Permeability (m-2), Permeability Error (m-2), Flow rate (l/m2h), Flowrate Error (l/m2h), Pore sizes (nm) 1-50, Pore size average (nm), Pore size average error (nm). Text and csv files can be opened with any text editor. PNG or JPEG or TIFF files can be opened with any imaging editor.
DOI: 10.17863/cam.110008
title: Research Data supporting "Uncovering low-frequency vibrations in surface-enhanced Raman of organic molecules"

description: Data from each of the molecules (used in the main figures of the paper) is contained in the .h5 files of each relevant folder, with wavenumbers in the corresponding file. The data for this publication is contained in the files in this deposit. The paper is open access so all the information is publicly accessible, and we refer to all figure captions and the full methods section.
DOI: 10.17863/cam.85701
title: Research data supporting "Interamna Lirenas - A Roman Town in Central Italy Revealed"

description: This data set contains ground-penetrating radar (GPR) data acquired at the Roman city Interamna Lirenas by Lieven Verdonck, between April 2015 and August 2017, within the ‘Beneath the Surface of Roman Republican Cities’ project. The area surveyed was approximately 23 ha. Data were collected with a pulse GPR and an RTK-GNSS instrument or robotic total station. The traverse separation was between 0.06 m and 0.12 m, the reading interval was approximately 0.05 m. The GPR data in this data set consist of georeferenced time-slices (GeoTIFFs), as well as shapefiles containing the delineation of the GPR anomalies by Alessandro Launaro, which were the basis for the archaeological interpretation. Both the GeoTIFFs and the shapefiles can directly be added to a geographical information system. Furthermore, metadata files in .csv format include all details on GPR data acquisition and processing, and on the creation of the shapefiles with the delineation. For the raw and processed GPR profiles in SEG-Y format, please refer to the open-access archive at the Archaeology Data Service (see the link below, under ‘Related resources’).
DOI: 10.17863/cam.81573
title: Research data supporting "Investigation of wurtzite formation in MOVPE-grown zincblende GaN epilayers on AlxGa1-xN nucleation layers"

description: The data consists of Scanning transmission electron microscopy based Energy-dispersive X-ray spectroscopy measurements. Data consists of the information from the Line profile obtained across the AlGaN (x=0.29) nucleation layer for different elements such as Si Kα, Pt Mα, Ga Lα, Al Kα. The second file (dm3 file) is a cross-sectional HRTEM image (zone axis = [110]) of the zb-GaN epilayer on GaN NL grown over 3C-SiC, shown in figure 1 of the associated publication (https://doi.org/10.1063/5.0077186).
DOI: 10.17863/cam.105478
title: Research Data supporting "Extensive photochemical restructuring of molecule-metal surfaces under room light"

description: This repository record contains the data of all main and supplementary information figures of the manuscript. The data are in txt files or excel files, tab seperated, and with columns labelled. All further information is contained in the captions of the manuscript. The data are organized in folders for each figure, with files named according to the figure number and panel. The experiment data are collected by Python code and simulated by Python and MATLAB, There are also some FDTD and DFT simulation data.