cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/0f7a2935865d871f75ac4437040bd179
title: High-Frequency Water Temperature Data at Lake Lillinonah, Connecticut, USA, 2018-current

description: An instrumented buoy maintained by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University has been deployed on Lake Lillinonah (Connecticut, USA) during the summer months to collect high-frequency water quality data. The buoy is deployed early each summer and remains in the lake until late October. The instrumented buoy is equipped with an RBR temperature sensor chain, collected data every meter from a depth of 0.6 meters to 14.5 meters and every two meters to a depth of 18.5. meters. Data was collected every fifteen minutes. Included in this data package are data sets containing 15-minute data as well as daily averages. Prior to the deployment of the RBR temperature sensor, the instrumented buoy was equipped with a Nexsens T-node thermistor chain (2011-2015) with sensors at different depths. These data are available in the data package EDI557. Additional high-frequency water quality data for Lake Lillinonah including dissolved oxygen, specific conductance and pigment fluorescence are available in packages EDI559 and EDI560.
DOI: 10.6084/m9.figshare.12308375
title: Additional file 5 of Knowledge and attitudes of physicians toward research ethics and scientific misconduct in Lebanon

description: Additional file 5. Raw data as spss file.
DOI: 10.6084/m9.figshare.12308375.v1
title: Additional file 5 of Knowledge and attitudes of physicians toward research ethics and scientific misconduct in Lebanon

description: Additional file 5. Raw data as spss file.
DOI: 10.6084/m9.figshare.12308270
title: Additional file 1 of Spatial heterogeneity and socioeconomic determinants of opioid prescribing in England between 2015 and 2018

description: Additional file 1 List of medicines, amount of active ingredients and their OME multipliers.
DOI: 10.6084/m9.figshare.12308270.v1
title: Additional file 1 of Spatial heterogeneity and socioeconomic determinants of opioid prescribing in England between 2015 and 2018

description: Additional file 1 List of medicines, amount of active ingredients and their OME multipliers.
DOI: 10.6084/m9.figshare.12308261
title: Additional file 4 of Variability and uncertainty in forest biomass estimates from the tree to landscape scale: the role of allometric equations

description: Additional file 4. Destructive sampling data; Data from each tree destructively sampled for this study showing component biomass (kg), diameter at breast height (cm), and height (m) as well as basal area (m2 ha−1) and tree density (number of trees ha−1) of 7.32 m radius plots measured around each tree.
DOI: 10.6084/m9.figshare.12308261.v1
title: Additional file 4 of Variability and uncertainty in forest biomass estimates from the tree to landscape scale: the role of allometric equations

description: Additional file 4. Destructive sampling data; Data from each tree destructively sampled for this study showing component biomass (kg), diameter at breast height (cm), and height (m) as well as basal area (m2 ha−1) and tree density (number of trees ha−1) of 7.32 m radius plots measured around each tree.
DOI: 10.6084/m9.figshare.12308201
title: Additional file 2 of Synthetic modelling of downhole resistivity data to improve interpretation of basin morphology from magnetotelluric inversion

description: Additional file 2. 1D rj-McMT inversion results. Inversion summary figures for all rj-McMT inversions run. Files are grouped by input site type and frequency band: BBMT (101 Hz to 3 x 102 Hz), reduced frequency AMT (101 Hz to 103 Hz) or full frequency AMT (101 Hz to 104 Hz).
DOI: 10.6084/m9.figshare.12308192
title: Additional file 1 of Synthetic modelling of downhole resistivity data to improve interpretation of basin morphology from magnetotelluric inversion

description: Additional file 1. 1D rj-McMT inversion record. A record of which 1D rj-McMC inversion result (BBMT, reduced frequency AMT or full frequency AMT) was used for the final interpretation.
DOI: 10.6084/m9.figshare.12308201.v1
title: Additional file 2 of Synthetic modelling of downhole resistivity data to improve interpretation of basin morphology from magnetotelluric inversion

description: Additional file 2. 1D rj-McMT inversion results. Inversion summary figures for all rj-McMT inversions run. Files are grouped by input site type and frequency band: BBMT (101 Hz to 3 x 102 Hz), reduced frequency AMT (101 Hz to 103 Hz) or full frequency AMT (101 Hz to 104 Hz).
DOI: 10.6084/m9.figshare.12308192.v1
title: Additional file 1 of Synthetic modelling of downhole resistivity data to improve interpretation of basin morphology from magnetotelluric inversion

description: Additional file 1. 1D rj-McMT inversion record. A record of which 1D rj-McMC inversion result (BBMT, reduced frequency AMT or full frequency AMT) was used for the final interpretation.
DOI: 10.6084/m9.figshare.12308132
title: Additional file 2 of Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma

description: Additional file 2 Table S2. Clinicopathologic data of orbitofacial and non-orbitofacial neurofibromas.
DOI: 10.6084/m9.figshare.12308132.v1
title: Additional file 2 of Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma

description: Additional file 2 Table S2. Clinicopathologic data of orbitofacial and non-orbitofacial neurofibromas.
DOI: 10.6084/m9.figshare.12308123
title: Additional file 1 of Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma

description: Additional file 1 Table S1. Differentiatially methylated probes and corresponding genes in orbitofacial vs. non-orbitofacial neurofibromas adjusted by age.
DOI: 10.6084/m9.figshare.12308123.v1
title: Additional file 1 of Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma

description: Additional file 1 Table S1. Differentiatially methylated probes and corresponding genes in orbitofacial vs. non-orbitofacial neurofibromas adjusted by age.
DOI: 10.6084/m9.figshare.12308108
title: Additional file 9 of Genetic diversity and phylogenetic relationships of tsetse flies of the palpalis group in Congo Brazzaville based on mitochondrial cox1 gene sequences

description: Additional file 9: Table S6. Glossina fuscipes samples metadata files including Laboratory datasheet, voucher informations, taxonomy, specimen details and collection data.
DOI: 10.6084/m9.figshare.12308108.v1
title: Additional file 9 of Genetic diversity and phylogenetic relationships of tsetse flies of the palpalis group in Congo Brazzaville based on mitochondrial cox1 gene sequences

description: Additional file 9: Table S6. Glossina fuscipes samples metadata files including Laboratory datasheet, voucher informations, taxonomy, specimen details and collection data.
DOI: 10.6084/m9.figshare.12308054
title: Additional file 5 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 5: Table S3. Accession numbers of downloaded sequences from NCBI database used in the generation of the NJ tree for T. rangeli. The retrieved sequences were trimmed to match with the amplicons generated with Ecuadorian samples. The discarded portions of the sequences are shown. Lineage (A, B, C, D and E) and KP1(+/−) information was included when available. Geographical origin of the samples is also in the file.
DOI: 10.6084/m9.figshare.12308057
title: Additional file 10 of Genetic diversity and phylogenetic relationships of tsetse flies of the palpalis group in Congo Brazzaville based on mitochondrial cox1 gene sequences

description: Additional File 10: Table S7. aGlossina fuscipes GenBank accession numbers and sequences, sample codes and ID. b Project/Code, sequences processed ID and sequence length.
DOI: 10.6084/m9.figshare.12308048
title: Additional file 3 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 3: Alignment S1. Sequences employed for the phylogenetic tree displayed in Fig. 4.
DOI: 10.6084/m9.figshare.12308051
title: Additional file 4 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 4: Alignment S2. Sequences employed for the phylogenetic tree displayed in Fig. 5.
DOI: 10.6084/m9.figshare.12308048.v1
title: Additional file 3 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 3: Alignment S1. Sequences employed for the phylogenetic tree displayed in Fig. 4.
DOI: 10.6084/m9.figshare.12308051.v1
title: Additional file 4 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 4: Alignment S2. Sequences employed for the phylogenetic tree displayed in Fig. 5.
DOI: 10.6084/m9.figshare.12308054.v1
title: Additional file 5 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 5: Table S3. Accession numbers of downloaded sequences from NCBI database used in the generation of the NJ tree for T. rangeli. The retrieved sequences were trimmed to match with the amplicons generated with Ecuadorian samples. The discarded portions of the sequences are shown. Lineage (A, B, C, D and E) and KP1(+/−) information was included when available. Geographical origin of the samples is also in the file.
DOI: 10.6084/m9.figshare.12308057.v1
title: Additional file 10 of Genetic diversity and phylogenetic relationships of tsetse flies of the palpalis group in Congo Brazzaville based on mitochondrial cox1 gene sequences

description: Additional File 10: Table S7. aGlossina fuscipes GenBank accession numbers and sequences, sample codes and ID. b Project/Code, sequences processed ID and sequence length.
DOI: 10.6084/m9.figshare.12308045
title: Additional file 2 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 2: Table S2. Correspondence between FLDs* (Illumina sequencer output) and samples belonging to intestinal contents.
DOI: 10.6084/m9.figshare.12308036
title: Additional file 1 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 1: Table S1. Raw data for monoclones and Ecuadorian samples. Haplotype ID, identity and number of reads are included.
DOI: 10.6084/m9.figshare.12308045.v1
title: Additional file 2 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 2: Table S2. Correspondence between FLDs* (Illumina sequencer output) and samples belonging to intestinal contents.
DOI: 10.6084/m9.figshare.12308036.v1
title: Additional file 1 of Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons

description: Additional file 1: Table S1. Raw data for monoclones and Ecuadorian samples. Haplotype ID, identity and number of reads are included.
DOI: 10.6084/m9.figshare.12308003
title: Additional file 1 of Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes

description: Additional file 1 This additional file provides one supplementary figure, four supplementary tables and extra explanation of method.
DOI: 10.6084/m9.figshare.12308003.v1
title: Additional file 1 of Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes

description: Additional file 1 This additional file provides one supplementary figure, four supplementary tables and extra explanation of method.
DOI: 10.6084/m9.figshare.12307895
title: Additional file 2 of Histone deacetylase 9 promoter hypomethylation associated with adipocyte dysfunction is a statin-related metabolic effect

description: Additional file 2 – Supplementary Tables. Table S1: Details of shared DMPs between mevastatin and atorvastatin-treated SGBS cells. Table S2: Details of CpG results in SGBS statin-treated cells in already reported to be associated wih BMI and T2D incidence.
DOI: 10.6084/m9.figshare.12307895.v1
title: Additional file 2 of Histone deacetylase 9 promoter hypomethylation associated with adipocyte dysfunction is a statin-related metabolic effect

description: Additional file 2 – Supplementary Tables. Table S1: Details of shared DMPs between mevastatin and atorvastatin-treated SGBS cells. Table S2: Details of CpG results in SGBS statin-treated cells in already reported to be associated wih BMI and T2D incidence.
DOI: 10.6084/m9.figshare.12307889
title: Additional file 1 of Improved patient-reported outcomes after interprofessional training in mental health: a nonrandomized intervention study

description: Additional file 1.
DOI: 10.6084/m9.figshare.12307889.v1
title: Additional file 1 of Improved patient-reported outcomes after interprofessional training in mental health: a nonrandomized intervention study

description: Additional file 1.
DOI: 10.6084/m9.figshare.12307856
title: Additional file 1 of Tropomyosin 1 genetically constrains in vitro hematopoiesis

description: Additional file 1:Table S1. The 860 chromatin feature tracks included in our LASSO analysis. These data were obtained from ENCODE [68], ChromHMM [81], and analyses of primary human MK cells [26]. Table S2. Chromatin features and coefficients comprising our penalized regression-based platelet scoring model. Coefficients for background parameters are included at the bottom of this list, but were not included in subsequent genome-wide SNP scoring. Table S3. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by platelet model scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S4. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by GWAVA scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S5. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by CADD scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S6. CRISPR/Cas9-edited Tropomyosin 1 knockout (KO) iPSC lines did not incur any additional CNVs compared to the parent line. Analyses of wild type CHOP14 and CHOP10 ‘parent’ lines, and derivative TPM1KO ‘child’ lines, are shown. Karyotype and copy number variation (CNV) analyses for all child lines were consistent with parental iPSC lines. Table S7. Dysregulated molecular pathways in TPM1KO MKs. FACS-sorted MKs were analyzed by microarray, and gene set enrichment was performed. Upregulated Gene Ontology [30] pathways with FDR&lt;25% are shown. There were no significantly downregulated pathways. GO, Gene Ontology. NES, nominal enrichment score. FDR, false discovery rate. Table S8. Chromatin features and coefficients comprising our penalized regression-based red cell scoring model. Coefficients for background parameters are included at the bottom of this list, but were not included in subsequent genome-wide SNP scoring. Table S9. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by red cell model scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S10. Penalized regression-based fine-mapping identifies eQTLs in established platelet and/or red cell trait GWAS loci that overlie GATA binding sites. Listed SNPs are within platelet or red cell trait GWAS LD blocks (EUR r2&gt;0.7), scored in the top 5% by both our platelet trait and red cell models, overlap canonical or near-canonical GATA binding sites, and are eQTLs for at least 1 gene [41] (GTEx V7). Associated GWAVA [17] scores are present, if available. SNP rsIDs and locations refer to hg19 genome. Table S11. Semi-quantitative RT-PCR primers used in this study.
DOI: 10.6084/m9.figshare.12307856.v1
title: Additional file 1 of Tropomyosin 1 genetically constrains in vitro hematopoiesis

description: Additional file 1:Table S1. The 860 chromatin feature tracks included in our LASSO analysis. These data were obtained from ENCODE [68], ChromHMM [81], and analyses of primary human MK cells [26]. Table S2. Chromatin features and coefficients comprising our penalized regression-based platelet scoring model. Coefficients for background parameters are included at the bottom of this list, but were not included in subsequent genome-wide SNP scoring. Table S3. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by platelet model scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S4. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by GWAVA scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S5. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by CADD scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S6. CRISPR/Cas9-edited Tropomyosin 1 knockout (KO) iPSC lines did not incur any additional CNVs compared to the parent line. Analyses of wild type CHOP14 and CHOP10 ‘parent’ lines, and derivative TPM1KO ‘child’ lines, are shown. Karyotype and copy number variation (CNV) analyses for all child lines were consistent with parental iPSC lines. Table S7. Dysregulated molecular pathways in TPM1KO MKs. FACS-sorted MKs were analyzed by microarray, and gene set enrichment was performed. Upregulated Gene Ontology [30] pathways with FDR&lt;25% are shown. There were no significantly downregulated pathways. GO, Gene Ontology. NES, nominal enrichment score. FDR, false discovery rate. Table S8. Chromatin features and coefficients comprising our penalized regression-based red cell scoring model. Coefficients for background parameters are included at the bottom of this list, but were not included in subsequent genome-wide SNP scoring. Table S9. Gene Ontology pathways that were significantly enriched in the top 1% of SNPs, as defined by red cell model scores. Presented pathways had false discovery rate (FDR) &lt; 5%. Table S10. Penalized regression-based fine-mapping identifies eQTLs in established platelet and/or red cell trait GWAS loci that overlie GATA binding sites. Listed SNPs are within platelet or red cell trait GWAS LD blocks (EUR r2&gt;0.7), scored in the top 5% by both our platelet trait and red cell models, overlap canonical or near-canonical GATA binding sites, and are eQTLs for at least 1 gene [41] (GTEx V7). Associated GWAVA [17] scores are present, if available. SNP rsIDs and locations refer to hg19 genome. Table S11. Semi-quantitative RT-PCR primers used in this study.
DOI: 10.6084/m9.figshare.12307820
title: Additional file 4 of Validation of a food frequency questionnaire as a tool for assessing dietary intake in cardiovascular disease research and surveillance in Bangladesh

description: Additional File 4 Fig. A1. Bland & Altman plot of energy and macronutrient from FFQ and average of 24-h. Fig. A2. Bland & Altman plot of vitamin intake from FFQ and average of 24-h. Fig. A3. Bland & Altman plot of mineral intake from FFQ and average of 24-h
DOI: 10.6084/m9.figshare.12307820.v1
title: Additional file 4 of Validation of a food frequency questionnaire as a tool for assessing dietary intake in cardiovascular disease research and surveillance in Bangladesh

description: Additional File 4 Fig. A1. Bland & Altman plot of energy and macronutrient from FFQ and average of 24-h. Fig. A2. Bland & Altman plot of vitamin intake from FFQ and average of 24-h. Fig. A3. Bland & Altman plot of mineral intake from FFQ and average of 24-h
DOI: 10.6084/m9.figshare.12307799
title: Additional file 2 of Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian

description: Additional file 2: Table S1. Photoperiod vs. scotoperiod statistical comparisons of activity profiles in this study. Table S2. Reads per sample reported in this study. Table S3. Differentially expressed genes by color and time from DESeq2 analyses. Table S4. Gene ontology enrichment for modules in gene co-expression analysis. Table S5. Gene expression comparisons for the candidate circadian genes reported in this study.
DOI: 10.6084/m9.figshare.12307784
title: ChengduBusRoutes.rar

description: This data includes four bus routes in Jianyang, Chengdu, and Chengdu administrative divisions. The data format is shapefile.
DOI: 10.6084/m9.figshare.12307799.v1
title: Additional file 2 of Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian

description: Additional file 2: Table S1. Photoperiod vs. scotoperiod statistical comparisons of activity profiles in this study. Table S2. Reads per sample reported in this study. Table S3. Differentially expressed genes by color and time from DESeq2 analyses. Table S4. Gene ontology enrichment for modules in gene co-expression analysis. Table S5. Gene expression comparisons for the candidate circadian genes reported in this study.
DOI: 10.6084/m9.figshare.12307748
title: CaGIS-data.rar

description: This data includes four bus routes in Jianyang, Chengdu, and Chengdu administrative divisions. The data format is shapefile.
DOI: 10.6084/m9.figshare.12307748.v2
title: CaGIS-data.rar

description: This data includes four bus routes in Jianyang, Chengdu, and Chengdu administrative divisions. The data format is shapefile.
DOI: 10.6084/m9.figshare.12307748.v1
title: CaGIS-data.rar

description: This data includes four bus routes in Jianyang, Chengdu, and Chengdu administrative divisions. The data format is shapefile.
DOI: 10.6084/m9.figshare.12307700
title: Density Functional Theory-based Electric Field Gradient Database

description: The deviation of the electron density around the nuclei from spherical symmetry determines the electric field gradient (EFG), which can be measured by various types of spectroscopy. Nuclear Quadrupole Resonance (NQR) is particularly sensitive to the EFG. The EFGs, and by implication NQR frequencies, vary dramatically across materials. Consequently, searching for NQR spectral lines in previously uninvestigated materials represents a major challenge. Calculated EFGs can significantly aid at the search’s inception. To facilitate this task, we have applied high-throughput density functional theory calculations to predict EFGs for 15187 materials in the JARVIS-DFT database. This database, which will include EFG as a standard entry, is continuously increasing. Given the large scope of the database, it is impractical to verify each calculation. However, we assess accuracy by singling out cases for which reliable experimental information is readily available and compare them to the calculations. We further present a statistical analysis of the results. The database and tools associated with our work are made publicly available by JARVIS-DFT (https://www.ctcms.nist.gov/~knc6/JVASP.html) and NIST-JARVIS API (http://jarvis.nist.gov/).
DOI: 10.6084/m9.figshare.12307643
title: Poster Data Mining 14036891.xlsx

description: Dataset required for Social Media and Web Science (Poster Assignment)