cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.71842/7efn-q811
title: Canopy Gaps Bird Communities La Biche River Valley 1997 YT
DOI: 10.17026/dans-xdb-k42c
title: PAN-00053824 - large single looped ring buckle

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00053824&lt;/p&gt;
description: Modified: 2019-10-28T09:23:04+01:00
DOI: 10.3535/ckd-1xf-m9a
title: Agrotis ripae Hübner, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d9h-ayy-k66
title: Phymatopus hecta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.71842/geag-8x42
title: KEMP Point Count Surveys 2001 to 2004 YT
DOI: 10.15468/dl.u43t73
title: Occurrence Download

description: A dataset containing 336851 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-06-07",
 "EventDate is less than or equal to 2025-07-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 336851 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088724-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/k0r-8pg-4n8
title: Herminia tarsipennalis Treitschke, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m2w-rej-f4f
title: Herminia grisealis ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xdb-k57y
title: Archeologische Kroniek 1984
title: 17e jaargang, nummer 6

description: &lt;p&gt;In de Archeologische Kroniek wordt een overzicht gegeven van archeologische vondsten in Noord- en Zuid-Holland, per plaats.&lt;br&gt;Dit wordt gedaan in drie verschillende periodes, namelijk de Prehistorie, Romeinse Tijd en Middeleeuwen en later.&lt;/p&gt;
description: &lt;p&gt;Holland, Regionaal-historisch tijdschrift&lt;/p&gt;
DOI: 10.3535/a4w-gys-5dk
title: Paranthrene tabaniformis (Rottemburg, von, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.4jpya8
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnostachyum cumingianum Nees"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234792-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7mcxv
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Decalepis khasiana (Kurz) Ionta ex Kambale"
 ]
}

 The dataset includes 42 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237294-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpsucr
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eumetopias jubatus (Schreber, 1776)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 96 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069291-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.befbnv
title: Occurrence Download

description: A dataset listing the 4980 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset's 4980 records were derived from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235665-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmpb3p
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnostachyum affine Nees"
 ]
}

 The dataset includes 60 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234788-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcnqay
title: Occurrence Download

description: A dataset containing 85799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.61255 36.79987,-5.99852 35.93208,-5.27171 35.96251,-4.26921 36.56873,-4.34439 37.31986,-4.69527 37.87586,-6.09877 37.86597,-6.61255 36.79987))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 85799 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007924-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tx7bj
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hanceola flexuosa C.Y.Wu & H.W.Li"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237287-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc2m2g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria celebica Kraenzl."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235701-230224095556074/datasets/export for details.
DOI: 10.15468/dl.pu3hcd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is incertae sedis",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((12.257418 44.48156,12.257414 44.481561,12.257207 44.481291,12.24328 44.469676,12.242451 44.469128,12.240472 44.467647,12.239278 44.466822,12.238098 44.466248,12.238095 44.466732,12.237917 44.475387,12.238148 44.477504,12.238086 44.478402,12.237944 44.480001,12.238619 44.480329,12.238598 44.482024,12.238575 44.483984,12.238529 44.484935,12.238661 44.488201,12.238568 44.489188,12.238675 44.489523,12.238483 44.491195,12.238331 44.493766,12.23808 44.49634,12.238075 44.498907,12.238129 44.500769,12.238426 44.505108,12.238419 44.506761,12.239047 44.510119,12.239326 44.511588,12.240266 44.515254,12.240919 44.518154,12.241163 44.519905,12.242918 44.524955,12.241948 44.526951,12.24278 44.528651,12.243104 44.529177,12.270278 44.524768,12.269676 44.523871,12.2698 44.523403,12.269606 44.522622,12.269694 44.521511,12.269598 44.520691,12.269935 44.520467,12.269723 44.519365,12.269777 44.518541,12.26977 44.517982,12.269518 44.517476,12.269825 44.516989,12.268761 44.514674,12.267562 44.511991,12.267264 44.509354,12.267185 44.507032,12.267093 44.504497,12.267622 44.504447,12.267619 44.504431,12.267959 44.504205,12.26781 44.503342,12.267536 44.502953,12.267502 44.501436,12.267139 44.501266,12.267136 44.500869,12.265992 44.500809,12.264345 44.499142,12.26655 44.49254,12.267822 44.49137,12.263779 44.489337,12.261251 44.485788,12.261161 44.485662,12.261165 44.485662,12.258806 44.482211,12.257418 44.48156)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030091-230530130749713/datasets/export for details.
DOI: 10.15468/dl.2dsqge
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnostachyum ceylanicum Arn. & Nees"
 ]
}

 The dataset includes 35 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234789-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qan5s
title: Occurrence Download

description: A dataset containing 1302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cheilanthes induta Kunze, Cheilanthes multifida (Sw.) Sw., Cheilanthes namaquensis (Baker) Schelpe & N.C.Anthony, Cheilanthes quadripinnata (Forssk.) Kuhn)"
 ]
}

 The dataset includes 1302 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010116-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8kvcg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hanguana bakoensis Siti Nurfazilah, Sofiman Othman & P.C.Boyce"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237295-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmct9z
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Epidendrum orchidiflorum Salzm. ex Lindl.",
 "Year 1990-2023"
 ]
}

 The dataset's 2 records were derived from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029962-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5p893
title: Occurrence Download

description: A dataset listing the 20400 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset's 20400 records were derived from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235666-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3217/e59fr-wj507
title: SynthAorta Dataset

description: SynthAorta Dataset

This repository contains the SynthAorta dataset, based on the paper "SynthAorta: A 3D Mesh Dataset of Parametrized Physiological Healthy Aortas". Any new updates or code related to the dataset will be published on the corresponding GitHub repository: https://github.com/domagoj-bosnjak/SynthAorta.

Dataset info

The dataset contains 30,000 synthetic geometries of physiological, healthy aortas, including three supraaortic vessels. Specifically, the dataset contains:



Structured hexahedral meshes; 4 refinement levels with 226, 1,792, 14,336, and 114,688 elements, respectively.

Consistent meshes, with the same node numbering for every example.

Centerlines with local radius data, enabling the recovery of the smooth surface using the convolution surface framework.

Code for outputting the meshes to the .msh file format, easily transferable to other FEM software.

The main parameter file, parameters_SynthAorta.csv, with all described geometric features. All accompanying files provide node-wise radii for different aortic regions. All files are aligned by case number, with consistent skeleton sampling across geometries. Full parameter definitions are available in the related publication.


Note: the dataset contains around 90,000 files in total.

Usage and file formats

All data is stored in binary format for efficiency. For more information, refer to the README.txt file. Minimal MATLAB/Octave code is also uploaded, which handles the input/output of meshes and skeletons, as well as elementary visualizations. The meshes are output in the standard .msh format, which can be parsed/converted by any modern FEM software or library. 

The examples folder contains extracted meshes for initial visualization, requiring the open-source software Gmsh.

Contact

All feedback is welcome, especially if you encounter problems or issues using the dataset. Please get in touch with us at bosnjak@tugraz.at or gmelito@tugraz.at.
DOI: 10.3217/f31ph-37h03
title: SynthAorta Dataset

description: SynthAorta Dataset

This repository contains the SynthAorta dataset, based on the paper "SynthAorta: A 3D Mesh Dataset of Parametrized Physiological Healthy Aortas". Any new updates or code related to the dataset will be published on the corresponding GitHub repository: https://github.com/domagoj-bosnjak/SynthAorta.

Dataset info

The dataset contains 30,000 synthetic geometries of physiological, healthy aortas, including three supraaortic vessels. Specifically, the dataset contains:



Structured hexahedral meshes; 4 refinement levels with 226, 1,792, 14,336, and 114,688 elements, respectively.

Consistent meshes, with the same node numbering for every example.

Centerlines with local radius data, enabling the recovery of the smooth surface using the convolution surface framework.

Code for outputting the meshes to the .msh file format, easily transferable to other FEM software.

The main parameter file, parameters_SynthAorta.csv, with all described geometric features. All accompanying files provide node-wise radii for different aortic regions. All files are aligned by case number, with consistent skeleton sampling across geometries. Full parameter definitions are available in the related publication.


Note: the dataset contains around 90,000 files in total.

Usage and file formats

All data is stored in binary format for efficiency. For more information, refer to the README.txt file. Minimal MATLAB/Octave code is also uploaded, which handles the input/output of meshes and skeletons, as well as elementary visualizations. The meshes are output in the standard .msh format, which can be parsed/converted by any modern FEM software or library. 

The examples folder contains extracted meshes for initial visualization, requiring the open-source software Gmsh.

Contact

All feedback is welcome, especially if you encounter problems or issues using the dataset. Please get in touch with us at bosnjak@tugraz.at or gmelito@tugraz.at.
DOI: 10.15468/dl.t4f9yj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepus saxatilis F.Cuvier, 1823",
 "HasCoordinate is true",
 "Country is Denmark"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015003-250310093411724/datasets/export for details.
DOI: 10.15468/dl.sb3s67
title: Occurrence Download

description: A dataset listing the 4171 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.5_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset's 4171 records were derived from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014991-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5jw8707r
title: MassIVE MSV000097355 - Pilocarpine inhibits Candida albicans biofilm maturation by altering lipid, sphingolipid, and protein content
title: Candida albicans filamentation and biofilm formation are key virulence factors tied to tissue invasion and antifungal tolerance. Pilocarpine hydrochloride (PHCl), a muscarinic receptor agonist, inhibits biofilm maturation, though its mechanism remains unclear. We explored PHCl effects by analyzing sphingolipid and lipid composition and proteomics in treated biofilms. PHCl significantly decreased polar lipid and ergosterol levels in biofilms while inducing phytoceramide and glucosylceramide accumulation. PHCl also induced reactive oxygen species and early apoptosis. Proteomic analysis revealed that PHCl treatment downregulated proteins associated with metabolism, cell wall remodeling, and DNA repair in biofilms to levels comparable to those observed in planktonic cells. Consistently with ergosterol reduction, Erg2 was found reduced. Overall, PHCl disrupts key pathways essential for biofilm integrity, resulting in reduced stability and increased detachment, underscoring its potential as a versatile antifungal compound.
DOI: 10.18150/a9umdz
title: Interaction of selected plant secondary metabolites with Ap3A and Ap4A dinucleotide cell regulators

description: [PL:]Przedmiotowy zbiór danych zawiera wyniki modelowania oddziaływań wybranych związków fenolowych oraz stilbenów z dwoma nukleotydowymi regulatorami cyklu komórkowego: Ap3A oraz Ap4A, a także ich energie interakcji.Cząsteczki zostały wstępnie zdokowane do modeli regulatorów z wykorzystaniem programu Autodock Nova. Wybrano predykcje o największej wartości powinowactwa wiązania (ang. binding affinity) z 8 proponowanych przez program do wyznaczenia energii interakcji. W przypadku predykcji o podobnych lub identycznych wartościach powinowactwa wybierano kilka modeli do badań z oznaczeniem kolejnych var_2 - var_4.Obliczenia energii interakcji wykonano z wykorzystaniem programu Gaussian 09 metodą Hartree-Focka. Stosowano bazy funkcyjne 3-21G (brak opisu bazy w nazwie), a następnie stosując pliki kontrolne z obliczeń tą bazą jako plik inputu dokonywano obliczeń bazą 3-21G*, 6-31G, oraz na końcu 6-31G(d). Dla pozostałych stosowanych baz, pliki wyjściowe w formacie .log zawierają nazwę przyrostek odnoszący się do baz funkcyjnych, odpowiednio _1 dla 3-21G*, _2 dla 6-31G oraz _3 dla bazy 6-31G(d). Energie oddziaływań obliczono wykorzystując funkcję programu counterpoise.
DOI: 10.25824/redu/j8innr
title: Secondary natural vegetation gains in the Atlantic Forest do not offset losses of carbon stocks and conservation of priority areas

description: This repositorie provides data for spatiotemporal analysis of natural vegetation cover trends in the Brazilian Atlantic Forest, between 1985 and 2022. The dataset contains raster and shapefiles and R scripts.
DOI: 10.5281/zenodo.15045803
title: Data table for EoS ABHT(QMC-RMF1) unified crust nparam=1

description: The data table for the EoS ABHT(QMC-RMF1) unified crust of the family Cold Neutron Star EoS with 1 parameters 
                can be found via this link  compose.obspm.fr/eos/326 together with additional information on the EoS.
                 
                Please be aware that in particular the authors of the equation of state can be found in the references below and on the 
                Compose data base ( compose.obspm.fr/eos/326).
                Thus if you use this entry, please cite the original references together with the link to the table. We are working currently on rectifying the automatic citation from zenodo with author information on the equation of state.
                
                
                
                The online service CompOSE provides data tables for different state of the art equations of state (EoS) 
                ready for further usage in astrophysical applications, nuclear physics and beyond.
                
                
                CompOSE would not be possible without the financial and organizational support from a large number of institutions and individual
                contributors. In particular, we gratefully acknowledge support by :
                

                
CompStar, Research Networking Programs of the European Science Foundation (ESF)
                
NewCompStar, "Exploring fundamental physics with compact stars" (MPNS COST action MP1304). 
                
PHAROS, "The multi-messenger physics and astrophysics of neutron stars" within the EU framework programme (COST action CA16214).
DOI: 10.5281/zenodo.15045804
title: Data table for EoS ABHT(QMC-RMF1) unified crust nparam=1

description: The data table for the EoS ABHT(QMC-RMF1) unified crust of the family Cold Neutron Star EoS with 1 parameters 
                can be found via this link  compose.obspm.fr/eos/326 together with additional information on the EoS.
                 
                Please be aware that in particular the authors of the equation of state can be found in the references below and on the 
                Compose data base ( compose.obspm.fr/eos/326).
                Thus if you use this entry, please cite the original references together with the link to the table. We are working currently on rectifying the automatic citation from zenodo with author information on the equation of state.
                
                
                
                The online service CompOSE provides data tables for different state of the art equations of state (EoS) 
                ready for further usage in astrophysical applications, nuclear physics and beyond.
                
                
                CompOSE would not be possible without the financial and organizational support from a large number of institutions and individual
                contributors. In particular, we gratefully acknowledge support by :
                

                
CompStar, Research Networking Programs of the European Science Foundation (ESF)
                
NewCompStar, "Exploring fundamental physics with compact stars" (MPNS COST action MP1304). 
                
PHAROS, "The multi-messenger physics and astrophysics of neutron stars" within the EU framework programme (COST action CA16214).