cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3334/cdiac/otg.woce_p03w_tps24_1
title: Hydrographic and Chemical data during the R/V Thomas G. Thompson TPS24_1 Cruise in 1985
DOI: 10.3334/cdiac/otg.best08sum_33hq2008070
title: R/V Healy 33HQ20080703, BEST '08 Summer cruise data
DOI: 10.3334/cdiac/otg.clivar_arc01_33hq20150809_tech_report
title: Global Ocean Repeat Hydrography Study: pH, Total Alkalinity, and Total CO2 Measurements in the Arctic Ocean During the R/V Healy Cruise ARC01 (9 August - 12 October, 2015): Technical Report
DOI: 10.3334/cdiac/otg.coast_gu2013
title: Carbon Dioxide, Hydrographic and Chemical Data Obtained During the R/V Gordon Gunter coastal cruises in 2013
DOI: 10.3334/cdiac/otg.coast_pisces_334b2012026
title: Carbon Dioxide, Hydrographic and Chemical data obtained during the R/V Pisces cruise PC-1207 in the US Northeast coast (10/27 - 11/13/2012)
DOI: 10.3334/cdiac/otg.coast_wcoa_2011
title: Carbon dioxide, hydrographic and chemical measurements oboard R/V Wecoma during the NOAA PMEL West Coast Ocean Acidification Cruise WCOA2011 (August 12 - 30, 2011)
DOI: 10.3334/cdiac/otg.coast_wcoa_2013
title: Chemical and hydrographic profile measurements during the West Coast Ocean Acidification Cruise WCOA2013 (August 3-29, 2013)
DOI: 10.3334/cdiac/otg.fr8_90_93
title: pH and pCO2 measurements from surface water samples during the R/V Franklin cruises FR 8/90 and 8/93
DOI: 10.3334/cdiac/otg.go_ship_p16s_2014_uw
title: Underway pCO2 Measurements in Surface Waters and the Atmosphere During the R/V Nathaniel B. Palmer P16S_2014 Cruise
DOI: 10.3334/cdiac/otg.ndp093_glodapv2_mapped
title: GLODAPv2 mapped climatologies
DOI: 10.3334/cdiac/otg.soccom_096u20150321
title: Hydrographic  and chemical data obtained during the SOCCOM float deployment expedition onboard R/V Investigator cruise SOTS, IN2015 (21 - 30 March 2015)
DOI: 10.3334/cdiac/otg.tsm_sharktrex1_2
title: Measurements of surface partial pressure of CO2 during the time series in a mangrove-dominated estuary of Harney, Florida
DOI: 10.3334/cdiac/otg.vos_al_1991_1993
title: Sea surface and atmospheric pCO2 measurements in the Southern Ocean onboard M/V L'Astrolabe during the MINERVE repeat section cruises in 1991-1993
DOI: 10.3334/cdiac/otg.vos_al_1999
title: Sea surface and atmospheric pCO2 measurements in the Southern Ocean onboard M/V L'Astrolabe during the MINERVE repeat section cruises in 1999
DOI: 10.3334/cdiac/otg.vos_sk02015
title: Sea Surface and Atmospheric fCO2 data measured in the Atlantic Ocean during the VOS/SOOP "Skogafoss-2" 2015 cruises
DOI: 10.3334/cdiac/otg.vos_sk02016
title: Sea Surface and Atmospheric fCO2 data measured in the Atlantic Ocean during the VOS/SOOP "Skogafoss-2" 2016 cruises
DOI: 10.3334/cdiac/vos_eqnx_2015
title: Sea Surface and Atmospheric fCO2 data measured in the Atlantic Ocean and Caribbean Sea during the Cruise Ship "Celebrity Equinox" 2015 VOS/SOOP lines
DOI: 10.3334/cdiac/vos_rb_2015
title: Underway pCO2 measurements aboard the R/V Ronald H. Brown during the 2015 cruises
DOI: 10.21227/c95b-xp11
title: Emotional message-exchanges during 18 crisis events

description: This dataset is a directed network that represents a direct message exchange among Twitter users during eighteen crisis events. The dataset comprises 645,339 unique user IDs and 1,396,709 edges that are labeled with respect to Plutchik's basic emotions (anger, fear, sadness, disgust, joy, trust, anticipation, and surprise) or "neutral" (if a tweet conveys no emotion).
DOI: 10.21227/jrfd-3z37
title: Emotional message-exchanges during 18 crisis events

description: This dataset is a directed network that represents a direct message exchange among Twitter users during eighteen crisis events. The dataset comprises 645,339 unique user IDs and 1,396,709 edges that are labeled with respect to Plutchik's basic emotions (anger, fear, sadness, disgust, joy, trust, anticipation, and surprise) or "neutral" (if a tweet conveys no emotion).
DOI: 10.6084/m9.figshare.13121801
title: The unprecedented outbreak of dengue in Singapore, a dataset of geographical dengue clusters covering the nationwide lockdown period in 2020

description: Dengue, a mosquito-transmitted viral disease, has posed a public health challenge to Singaporean residents over the years. In 2020, Singapore has been experiencing an unprecedented dengue outbreak. We collect a dataset of geographical dengue clusters reported by the National Environment Agency (NEA) from 15 Feb to 9 July in 2020, covering the nationwide lockdown period from 7 April to 1 June for controlling the pandemics of COVID-19. NEA regularly updates the dengue clusters during which an infected person may be tagged to one cluster based on the most probably infection location (residential apartment or workplace address), which is further matched to fine-grained spatial units with an average coverage of only about 1.35 km<sup>2</sup>. Such dengue cluster dataset helps not only reveal the dengue transmission pattern, but also reflect the effects of lockdown on dengue spreading dynamics. The resulting data records are released in simple formats for easy access to facilitate studies on dengue epidemics
DOI: 10.6084/m9.figshare.12834641
title: Serological survey of SARS-CoV-2 IgG in antenatal women in Oxfordshire, April-July 2020

description: We undertook a survey of 1000 sera routinely collected in the first trimester of pregnancy, from women booking their pregnancy care in Oxfordshire, UK between April and July 2020. We used an ELISA to detect IgG to SARS-CoV-2 trimeric spike protein and in vitro SARS-CoV-2 pseudotyped microneutralisation (pMN) assays.<br> Ethics approval: South Central Research Ethics Committee (Ref: 08/H0606/139).
DOI: 10.6084/m9.figshare.12834641.v1
title: Serological survey of SARS-CoV-2 IgG in antenatal women in Oxfordshire, April-July 2020

description: We undertook a survey of 1000 sera routinely collected in the first trimester of pregnancy, from women booking their pregnancy care in Oxfordshire, UK between April and July 2020. We used an ELISA to detect IgG to SARS-CoV-2 trimeric spike protein and in vitro SARS-CoV-2 pseudotyped microneutralisation (pMN) assays.<br> Ethics approval: South Central Research Ethics Committee (Ref: 08/H0606/139).
DOI: 10.5281/zenodo.4108557
title: EmERGE - ITM

description: EmERGE ITM dataset
DOI: 10.5281/zenodo.4108556
title: EmERGE - ITM

description: EmERGE ITM dataset
DOI: 10.5281/zenodo.4108674
title: EmERGE - Zagreb

description: EmERGE - Zagreb data
DOI: 10.5281/zenodo.4108673
title: EmERGE - Zagreb

description: EmERGE - Zagreb data
DOI: 10.5281/zenodo.4108761
title: EmERGE - Brighton

description: EmERGE - Brighton data
DOI: 10.5281/zenodo.4108760
title: EmERGE - Brighton

description: EmERGE - Brighton data
DOI: 10.6084/m9.figshare.13120340
title: case33bw_wc.m

description: A modified IEEE 33-bus distribution system is used to support the proposed capacity evaluation method.
DOI: 10.5281/zenodo.4108783
title: EmERGE - Barcelona

description: EmERGE - Barcelona data
DOI: 10.5281/zenodo.4108782
title: EmERGE - Barcelona

description: EmERGE - Barcelona data
DOI: 10.6084/m9.figshare.12045582.v8
title: Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals

description: Supplementary tables for the Paper published
DOI: 10.5281/zenodo.4113876
title: The pseudo-two-dimensional dynamics in a system of macroscopic rolling spheres - Experimental data

description: Each file has an unique experiment_id at the beginning of its name. "*_trajectories.pkl" files are stored in a compressed Python pickle format, they can be read with pandas as follows: import pandas as pd df = pd.read_pickle(file_dir_name, compression='xz') "_info.txt" files cointain all the physical details of each experiment
DOI: 10.21227/e8r0-5f33
title: A Multispectral Light Field Dataset for Light Field Deep Learning

description: Deep learning undoubtedly has had a huge impact on the computer vision community in recent years. In light field imaging, machine learning-based applications have significantly outperformed their conventional counterparts. Furthermore, multi- and hyperspectral light fields have shown promising results in light field-related applications such as disparity or shape estimation. Yet, a multispectral light field data\-set, enabling data-driven approaches, is missing. Therefore, we propose a new synthetic multispectral light field dataset with depth and disparity ground truth. The dataset consists of a training, validation and test dataset, containing light fields of randomly generated scenes, as well as a challenge dataset rendered from hand-crafted scenes enabling detailed performance assessment.
DOI: 10.21227/pnv3-p555
title: A Multispectral Light Field Dataset for Light Field Deep Learning

description: Deep learning undoubtedly has had a huge impact on the computer vision community in recent years. In light field imaging, machine learning-based applications have significantly outperformed their conventional counterparts. Furthermore, multi- and hyperspectral light fields have shown promising results in light field-related applications such as disparity or shape estimation. Yet, a multispectral light field data\-set, enabling data-driven approaches, is missing. Therefore, we propose a new synthetic multispectral light field dataset with depth and disparity ground truth. The dataset consists of a training, validation and test dataset, containing light fields of randomly generated scenes, as well as a challenge dataset rendered from hand-crafted scenes enabling detailed performance assessment.
DOI: 10.6084/m9.figshare.13102796
title: 2020 RSV article

description: supplementary figures, data, and code for the 2020 RSV paper by Junier et al. (submitted).<br>
DOI: 10.6084/m9.figshare.13102796.v1
title: 2020 RSV article

description: supplementary figures, data, and code for the 2020 RSV paper by Junier et al. (submitted).<br>
DOI: 10.6084/m9.figshare.13121840
title: CircRNA expression profile unites WGCNA to reveal key genes associated with immune cell infiltrates in different TNM stages of colorectal cancer

description: Whole transcriptome sequencing of colorectal cancer
DOI: 10.6084/m9.figshare.13121840.v1
title: CircRNA expression profile unites WGCNA to reveal key genes associated with immune cell infiltrates in different TNM stages of colorectal cancer

description: Whole transcriptome sequencing of colorectal cancer
DOI: 10.6084/m9.figshare.13121846
title: Cannabis and Psychedelics User Survey questionnaire and dataset

description: Survey questionnaire PDF + dataset as SPSS .sav file<br>
DOI: 10.6084/m9.figshare.13121825
title: data and meta data for field experiment- bioblitz

description: The goal of the experiment was to find the hotspot of diversity in a mirco-level. From this, we can hope to find some fundamental variables influence the richness of insect. This is my data and meta-data (combined) about species observed in my garden. This is a field experiment for a bioblitz project. Through very briefly report, hope u guys can recreate the experiment by yourself
DOI: 10.6084/m9.figshare.13121825.v2
title: data and meta data for field experiment- bioblitz

description: The goal of the experiment was to find the hotspot of diversity in a mirco-level. From this, we can hope to find some fundamental variables influence the richness of insect. This is my data and meta-data (combined) about species observed in my garden. This is a field experiment for a bioblitz project. Through very briefly report, hope u guys can recreate the experiment by yourself
DOI: 10.6084/m9.figshare.13121825.v1
title: data and meta data for field experiment- bioblitz

description: The goal of the experiment was to find the hotspot of diversity in a mirco-level. From this, we can hope to find some fundamental variables influence the richness of insect. This is my data and meta-data (combined) about species observed in my garden. This is a field experiment for a bioblitz project. Through very briefly report, hope u guys can recreate the experiment by yourself
DOI: 10.5281/zenodo.4113906
title: Effect of Acute Sleep Hygiene on Salivary Cortisol Level Following A Late Night Soccer-Specific Training Session

description: Letter to the editor with data, no abstract available
DOI: 10.5281/zenodo.4113905
title: Effect of Acute Sleep Hygiene on Salivary Cortisol Level Following A Late Night Soccer-Specific Training Session

description: Letter to the editor with data, no abstract available
DOI: 10.5517/ccdc.csd.cc2606k0
title: CCDC 2025991: Experimental Crystal Structure Determination

description: Related Article: Xiao Zhang, Chunmao Dong, Guiyun Wu, Luqiong Huo, Yunfei Yuan, Yingjie Hu, Hongxin Liu, Haibo Tan|2020|Org.Lett.|22|8007|doi:10.1021/acs.orglett.0c02943
DOI: 10.5517/ccdc.csd.cc2606m2
title: CCDC 2025993: Experimental Crystal Structure Determination

description: Related Article: Xiao Zhang, Chunmao Dong, Guiyun Wu, Luqiong Huo, Yunfei Yuan, Yingjie Hu, Hongxin Liu, Haibo Tan|2020|Org.Lett.|22|8007|doi:10.1021/acs.orglett.0c02943
DOI: 10.5517/ccdc.csd.cc2606q5
title: CCDC 2025996: Experimental Crystal Structure Determination

description: Related Article: Xiao Zhang, Chunmao Dong, Guiyun Wu, Luqiong Huo, Yunfei Yuan, Yingjie Hu, Hongxin Liu, Haibo Tan|2020|Org.Lett.|22|8007|doi:10.1021/acs.orglett.0c02943
DOI: 10.5517/ccdc.csd.cc2606r6
title: CCDC 2025997: Experimental Crystal Structure Determination

description: Related Article: Xiao Zhang, Chunmao Dong, Guiyun Wu, Luqiong Huo, Yunfei Yuan, Yingjie Hu, Hongxin Liu, Haibo Tan|2020|Org.Lett.|22|8007|doi:10.1021/acs.orglett.0c02943
DOI: 10.5281/zenodo.4113910
title: Age-dependent modulation of bone metabolism in zebrafish scales as new model of male osteoporosis in lower vertebrates

description: After middle age, in human bone, the resorption usually exceeds formation resulting in bone loss and increased risk of fractures in the aged population. Only few in vivo models in higher vertebrates are available for pathogenic and therapeutic studies about bone aging. Among these, male Danio rerio (zebrafish) can be successfully used as low vertebrate model to study degenerative alterations that affect the skeleton during aging, reducing the role of sex hormones.In this paper, we investigated the early bone aging mechanisms in male zebrafish (3, 6, 9 months old) scales evaluating the physiological changes and the effects of prednisolone, a pro-osteoporotic drug.The results evidentiated an age-dependent reduction of the mineralization rate in the fish scales, as highlighted by growing circle measurements. Indeed, the osteoblastic ALP activity at the matrix deposition site was found progressively downregulated.The higher TRAP activity was found in 63% of 9-month-old fish scales associated with resorption lacunae along the scale border. Gene expression analysis evidentiated that an increase of the tnfrsf1b (homolog of human rank) in aging scales may be responsible for resorption stimulation.Interestingly, prednisolone inhibited the physiological growth of the scale and induced in aged scales a more significant bone resorption compared with untreated fish (3.8% vs 1.02%). Bone markers analysis shown a significant reduction of ALP/TRAP ratio due to a prednisolone-dependent stimulation of tnfsf11 (homolog of human rankl) in scales of older fish.The results evidentiated for the first time the presence of a senile male osteoporosis in lower vertebrate. This new model could be helpful to identify the early mechanisms of bone aging and new therapeutic strategies to prevent age-related bone alterations in humans.
DOI: 10.5281/zenodo.4113909
title: Age-dependent modulation of bone metabolism in zebrafish scales as new model of male osteoporosis in lower vertebrates

description: After middle age, in human bone, the resorption usually exceeds formation resulting in bone loss and increased risk of fractures in the aged population. Only few in vivo models in higher vertebrates are available for pathogenic and therapeutic studies about bone aging. Among these, male Danio rerio (zebrafish) can be successfully used as low vertebrate model to study degenerative alterations that affect the skeleton during aging, reducing the role of sex hormones.In this paper, we investigated the early bone aging mechanisms in male zebrafish (3, 6, 9 months old) scales evaluating the physiological changes and the effects of prednisolone, a pro-osteoporotic drug.The results evidentiated an age-dependent reduction of the mineralization rate in the fish scales, as highlighted by growing circle measurements. Indeed, the osteoblastic ALP activity at the matrix deposition site was found progressively downregulated.The higher TRAP activity was found in 63% of 9-month-old fish scales associated with resorption lacunae along the scale border. Gene expression analysis evidentiated that an increase of the tnfrsf1b (homolog of human rank) in aging scales may be responsible for resorption stimulation.Interestingly, prednisolone inhibited the physiological growth of the scale and induced in aged scales a more significant bone resorption compared with untreated fish (3.8% vs 1.02%). Bone markers analysis shown a significant reduction of ALP/TRAP ratio due to a prednisolone-dependent stimulation of tnfsf11 (homolog of human rankl) in scales of older fish.The results evidentiated for the first time the presence of a senile male osteoporosis in lower vertebrate. This new model could be helpful to identify the early mechanisms of bone aging and new therapeutic strategies to prevent age-related bone alterations in humans.
DOI: 10.6084/m9.figshare.12941786
title: SequencingData

description: "<b>DNA Synthesis for True Random Number Generation"</b><b>Synthesis and sequencing data</b>
DOI: 10.5281/zenodo.3898344
title: DPPC/POPC/POPG/CHL1 Monolayer Simulations With Charmm36+OPC (Part 1/4)

description: DPPC/POPC/POPG/CHL1 (60/20/10/10 mol-%) monolayers simulated at varying area per lipid and temperature in the NVT ensemble. The Charmm36 lipid model [1] is used together with the 4-point OPC water model [2]. Each system consist of two monolayers with 169 lipids each. The monolayers are separated by a water slab, and surrounded by vacuum. The numbering in the filenames corresponds to the area per lipid in Ångströms * 10, temperature, possible independent repetitions (2 and 3). The starting structures were generated with CHARMM-GUI with an initial area per lipid of 50 Å^2, followed by a simulation during which the monolayer area was either compressed or expanded using PLUMED. All trajectories are simulated for 1000 ns with Gromacs 5.1.x [3] using the default Charmm36 monolayer simulations parameters given in the mdp file. Topology (.top) and index files are also common for all simulations. The topologies (.itp) for the lipids can be obtained from Charmm-GUI and for the OPC water model from https://bioinformatics.cs.vt.edu/~izadi/ . Part 1 of this upload is available at: DOI:10.5281/zenodo.3898344 Part 2 of this upload is available at: DOI:10.5281/zenodo.3899875 Part 3 of this upload is available at: DOI:10.5281/zenodo.3899535 Part 4 of this upload is available at: DOI:10.5281/zenodo.4034250 Juho Liekkinen, Berta de Santos Moreno, Riku O. Paananen, Ilpo Vattulainen, Luca Monticelli, Jorge Bernardino de la Serna, and Matti Javanainen. Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level. Frontiers in Cell and Developmental Biology - Cellular Biochemistry (2020) doi: 10.3389/fcell.2020.581016 [1] DOI: 10.1021/jp101759q [2] DOI: 10.1021/jz501780a [3] DOI: 10.1016/j.softx.2015.06.001
DOI: 10.5281/zenodo.3898343
title: DPPC/POPC/POPG/CHL1 Monolayer Simulations With Charmm36+OPC (Part 1/4)

description: DPPC/POPC/POPG/CHL1 (60/20/10/10 mol-%) monolayers simulated at varying area per lipid and temperature in the NVT ensemble. The Charmm36 lipid model [1] is used together with the 4-point OPC water model [2]. Each system consist of two monolayers with 169 lipids each. The monolayers are separated by a water slab, and surrounded by vacuum. The numbering in the filenames corresponds to the area per lipid in Ångströms * 10, temperature, possible independent repetitions (2 and 3). The starting structures were generated with CHARMM-GUI with an initial area per lipid of 50 Å^2, followed by a simulation during which the monolayer area was either compressed or expanded using PLUMED. All trajectories are simulated for 1000 ns with Gromacs 5.1.x [3] using the default Charmm36 monolayer simulations parameters given in the mdp file. Topology (.top) and index files are also common for all simulations. The topologies (.itp) for the lipids can be obtained from Charmm-GUI and for the OPC water model from https://bioinformatics.cs.vt.edu/~izadi/ . Part 1 of this upload is available at: DOI:10.5281/zenodo.3898344 Part 2 of this upload is available at: DOI:10.5281/zenodo.3899875 Part 3 of this upload is available at: DOI:10.5281/zenodo.3899535 Part 4 of this upload is available at: DOI:10.5281/zenodo.4034250 Juho Liekkinen, Berta de Santos Moreno, Riku O. Paananen, Ilpo Vattulainen, Luca Monticelli, Jorge Bernardino de la Serna, and Matti Javanainen. Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level. Frontiers in Cell and Developmental Biology - Cellular Biochemistry (2020) doi: 10.3389/fcell.2020.581016 [1] DOI: 10.1021/jp101759q [2] DOI: 10.1021/jz501780a [3] DOI: 10.1016/j.softx.2015.06.001
DOI: 10.5281/zenodo.3899875
title: DPPC/POPC/POPG/CHL1 Monolayer Simulations With Charmm36+OPC (Part 2/4)

description: DPPC/POPC/POPG/CHL1 (60/20/10/10 mol-%) monolayers simulated at varying area per lipid and temperature in the NVT ensemble. The Charmm36 lipid model [1] is used together with the 4-point OPC water model [2]. Each system consist of two monolayers with 169 lipids each. The monolayers are separated by a water slab, and surrounded by vacuum. The numbering in the filenames corresponds to the area per lipid in Ångströms * 10, temperature, possible independent repetitions (2 and 3). The starting structures were generated with CHARMM-GUI with an initial area per lipid of 50 Å^2, followed by a simulation during which the monolayer area was either compressed or expanded using PLUMED. All trajectories are simulated for 1000 ns with Gromacs 5.1.x [3] using the default Charmm36 monolayer simulations parameters given in the mdp file. Topology (.top) and index files are also common for all simulations. The topologies (.itp) for the lipids can be obtained from Charmm-GUI and for the OPC water model from https://bioinformatics.cs.vt.edu/~izadi/ . Part 1 of this upload is available at: DOI:10.5281/zenodo.3898344 Part 2 of this upload is available at: DOI:10.5281/zenodo.3899875 Part 3 of this upload is available at: DOI:10.5281/zenodo.3899535 Part 4 of this upload is available at: DOI:10.5281/zenodo.4034250 Juho Liekkinen, Berta de Santos Moreno, Riku O. Paananen, Ilpo Vattulainen, Luca Monticelli, Jorge Bernardino de la Serna, and Matti Javanainen. Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level. Frontiers in Cell and Developmental Biology - Cellular Biochemistry (2020) doi: 10.3389/fcell.2020.581016 [1] DOI: 10.1021/jp101759q [2] DOI: 10.1021/jz501780a [3] DOI: 10.1016/j.softx.2015.06.001