cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7147502
title: Ginkgo Chauvel's left and right superficial white matter atlas of the chimpanzee brain

description: <strong>Superficial Chauvel's chimpanzee white matter atlas.</strong> The left and right superficial white matter atlas of the chimpanzee brain was built upon a cohort of 39 in vivo chimpanzees magnetic resonance imaging (MRI) scans shared by the Pr. William D. Hopkins, registered on a template space (Juna.chimp template from Vickery et al. 2020). The construction of this atlas is based on the analysis of the anatomical and diffusion MRI dataset using the tractography and fiber clustering tools available from the Ginkgo toolbox (CEA, NeuroSpin, BAOBAB, GAIA, Ginkgo Team, https://framagit.org/cpoupon/gkg). The atlas can be visualized using the BrainVISA/Anatomist viewer available at https://brainvisa.info/web/download.html. <br> The left hemisphere atlas is composed of 422 superficial white matter bundles and the right hemisphere atlas of 400 superficial white matter bundles.<br> <br> The 38 cortical regions considered for the left and right hemispheres were : the anterior/middle/posterior superior frontal gyrus (aSFG/mSFG/pSFG) ; the anterior and posterior middle frontal gyrus (aMFG/pMFG) ; the anterior/middle/posterior inferior frontal gyrus (aIFG/mIFG/pIFG) ; the medial lateral orbitofrontal cortex (mOFC/ lOFC) ; the superior, middle, inferior precentral gyrus (sPrCG / mPrCG / iPrCG) ; the Paracentral Lobule (PCL) ; the anterior and posterior insula (alns / plns) ; the anterior, posterior superior temporal gyrus (aSTG/pSTG) ; the anterior, posterior middle temporal gyrus (aMTG/pMTG) ; the anterior and posterior inferior temporal gyrus (aITG, pITG) ; the anterior and posterior fusiform gyrus (aFFG/pFFG) ; the superior, middle and inferior postcentral gyrus (sPoCG/mPoCG/iPoCG) ; the superior parietal lobule (SPL) ; the supramarginal gyrus (SMG) ; the angular gyrus (AnG) ; the Precuneus (PCun) ; the cuneus (Cun) ; the Lingual Gyrus (LG) ; the superior, middle, inferior occipital gyrus (sOG / mOG/ iOG) ; the entorhinal Cortex (EnC) ; the parahippocampal gyrus (PHC).<br> <br> The atlas is provided using the Anatomist *.bundles/*.bundlesdata format for which metainformation can be found in the *.bundles file among which:<br> - the labels of the different white matter bundles ('labels' entry) following the syntactic rule "&lt;right/left&gt;_&lt;roi1&gt;_&lt;roi2&gt;_&lt;clusterId&gt;",<br> - the number of streamlines populating each white matter bundle ('curve3d_counts' entry), in the same order as the 'labels' key,<br> - the total number of white matter bundles ('item_count' entry),<br> - the total number of streamlines ('curves_count' entry)
DOI: 10.5281/zenodo.7306259
title: Dataset for LBGrain

description: Dataset for the figures in the paper about lattice Boltzmann modelling of free-surface granular flows
description: The data files can be loaded by using the pickle module in Python.
DOI: 10.5281/zenodo.7306260
title: Dataset for LBGrain

description: Dataset for the figures in the paper about lattice Boltzmann modelling of free-surface granular flows
description: The data files can be loaded by using the pickle module in Python.
DOI: 10.5281/zenodo.7424451
title: Dataset for LBGrain

description: Dataset for the figures in the paper about lattice Boltzmann modelling of free-surface granular flows
description: The data files can be loaded by using the pickle module in Python.
DOI: 10.6084/m9.figshare.21707783.v1
title: Branching_angles_on_ETP.csv

description: Information for river basins on the eastern Tibetan Plateau, including x and y coordinates of each basin centroid based on the WGS 1984 coordinate system, mean aridity index AI, mean topographic slope <em>St</em> (°), mean channel slope <em>Sc</em> (°) and mean branching angles <em>α</em> (°) of each basin.
DOI: 10.5281/zenodo.4638090
title: fusion-jena/befchina-test-collection: Initial release

description: This test collection contains relevance judgments of 14 questions for dataset search in biodiversity research. The data corpus this test collection is based consists of 372 metadata files collected in the scope of the BEF-China project (https://bef-china.com/). The questions are available in the readme file, the relevance judgments are provided in a text file. Each row denotes a human assessment that a dataset is relevant for a topic. The first number denotes the question number, the second number provides the dataset number, the third denotes the relevance judgment (1-relevant) and the last number is the timestamp of the creation of the entry. All datasets of the BEF-China corpus that are not mentioned for a question are deemed not relevant.
DOI: 10.5281/zenodo.4638089
title: fusion-jena/befchina-test-collection: Major service release

description: This repository provides a test collection for dataset search in biodiversity. The test collections consists of 14 questions collected in different biodiversity research related projects and reflecting real user informations needs, a corpus of 372 datasets created in the scope of the BEF-China project and human assessments evaluating which dataset is relevant to a question. Further information on the BEF-China project can be obtained from the website: https://bef-china.com. <em>version 2.0:</em> This service release provides the relevance judgments in the proper TREC format: &lt;TOPIC&gt;&lt;ITERATION&gt;&lt;DATASET NUMBER&gt;&lt;RELEVANCE&gt; and duplicate entries are removed. https://github.com/fusion-jena/befchina-test-collection
DOI: 10.5281/zenodo.4704947
title: fusion-jena/befchina-test-collection: Minor service release

description: This test collection contains relevance judgments of 14 questions for dataset search in biodiversity research. The data corpus this test collection is based consists of 372 metadata files collected in the scope of the BEF-China project (https://bef-china.com/). The questions are available in the readme file, the relevance judgments are provided in a text file. Each row denotes a human assessment that a dataset is relevant for a topic. The first number denotes the question number, the second number provides the dataset number, the third denotes the relevance judgment (1-relevant) and the last number is the timestamp of the creation of the entry. All datasets of the BEF-China corpus that are not mentioned for a question are deemed not relevant. v1.0.1: In this version, spelling errors are corrected and the comprehensibility of the questions is improved.
DOI: 10.5281/zenodo.7371711
title: fusion-jena/befchina-test-collection: Major service release

description: This repository provides a test collection for dataset search in biodiversity. The test collections consists of 14 questions collected in different biodiversity research related projects and reflecting real user informations needs, a corpus of 372 datasets created in the scope of the BEF-China project and human assessments evaluating which dataset is relevant to a question. Further information on the BEF-China project can be obtained from the website: https://bef-china.com. <em>version 2.0:</em> This service release provides the relevance judgments in the proper TREC format: &lt;TOPIC&gt;&lt;ITERATION&gt;&lt;DATASET NUMBER&gt;&lt;RELEVANCE&gt; and duplicate entries are removed. https://github.com/fusion-jena/befchina-test-collection
DOI: 10.18112/openneuro.ds003838.v1.0.4
title: EEG, pupillometry, ECG and photoplethysmography, and behavioral data in the digit span task and rest
DOI: 10.18112/openneuro.ds003838.v1.0.5
title: EEG, pupillometry, ECG and photoplethysmography, and behavioral data in the digit span task and rest
DOI: 10.5281/zenodo.7424540
title: Head-to-head comparison of nasal and nasopharyngeal sampling using SARS-CoV-2 rapid antigen testing in Lesotho

description: These are pseudo-anonymised data from the MISTRAL study: "Head-to-head comparison of nasal and nasopharyngeal sampling using SARS-CoV-2 rapid antigen testing in Lesotho". The data dictionary explains the data available in the dataset. Between December 2020 and September 2021, 2131 individuals with either COVID symptoms or contact with a COVID-positive case were included from two hospitals in Lesotho and had a valid PCR results.
DOI: 10.5281/zenodo.7424539
title: Head-to-head comparison of nasal and nasopharyngeal sampling using SARS-CoV-2 rapid antigen testing in Lesotho

description: These are pseudo-anonymised data from the MISTRAL study: "Head-to-head comparison of nasal and nasopharyngeal sampling using SARS-CoV-2 rapid antigen testing in Lesotho". The data dictionary explains the data available in the dataset. Between December 2020 and September 2021, 2131 individuals with either COVID symptoms or contact with a COVID-positive case were included from two hospitals in Lesotho and had a valid PCR results.
DOI: 10.5519/qd.xnj7wpg2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5063 records)
DOI: 10.5281/zenodo.7374398
title: Dataset: Comparative evaluation of a keyword based search and semantic search in a data portal for biodiversity research.

description: Supplementary material for a comparative evaluation of a keyword based search and semantic search in a data portal for biodiversity research. We conducted a relevance evaluation with 6 users over 19 search questions in two search interfaces. The users provided up to five search questions and relevant keywords from their research background. We setup a dataset search over a corpus of ~92,000 randomly selected metadata files from GFBio (https://www.gfbio.org). For each of their own search queries, the users got two result sets presented. The first one displayed results obtained from a keyword search. The second panel contained dataset results from a prototypical semantic search. Instead of results with exact mentions of the query terms, the semantic search also presented related results with synonyms and more specific terms or terms obtained from concept nodes of a higher hierarchy level. Each user rated the relevance of his/her own search queries on a 7-point Likert scale for both search results.<br> In addition, users also assessed the expanded keywords for each question. More information can be found in our publication: Löffler, F. and Klan, F. (2016): Does Term Expansion Matter for the Retrieval of Biodiversity Data? in Joint Proceedings of the Posters and Demos Track of the 12th International Conference on Semantic Systems - SEMANTiCS2016 and the 1st International Workshop on Semantic Change & Evolving Semantics (SuCCESS'16), co-located with the 12th International Conference on Semantic Systems (SEMANTiCS 2016),2016, http://ceur-ws.org/Vol-1695/paper2.pdf
description: {"references": ["http://ceur-ws.org/Vol-1695/paper2.pdf"]}
DOI: 10.5281/zenodo.7374399
title: Dataset: Comparative evaluation of a keyword based search and semantic search in a data portal for biodiversity research.

description: Supplementary material for a comparative evaluation of a keyword based search and semantic search in a data portal for biodiversity research. We conducted a relevance evaluation with 6 users over 19 search questions in two search interfaces. The users provided up to five search questions and relevant keywords from their research background. We setup a dataset search over a corpus of ~92,000 randomly selected metadata files from GFBio (https://www.gfbio.org). For each of their own search queries, the users got two result sets presented. The first one displayed results obtained from a keyword search. The second panel contained dataset results from a prototypical semantic search. Instead of results with exact mentions of the query terms, the semantic search also presented related results with synonyms and more specific terms or terms obtained from concept nodes of a higher hierarchy level. Each user rated the relevance of his/her own search queries on a 7-point Likert scale for both search results.<br> In addition, users also assessed the expanded keywords for each question. More information can be found in our publication: Löffler, F. and Klan, F. (2016): Does Term Expansion Matter for the Retrieval of Biodiversity Data? in Joint Proceedings of the Posters and Demos Track of the 12th International Conference on Semantic Systems - SEMANTiCS2016 and the 1st International Workshop on Semantic Change & Evolving Semantics (SuCCESS'16), co-located with the 12th International Conference on Semantic Systems (SEMANTiCS 2016),2016, http://ceur-ws.org/Vol-1695/paper2.pdf
description: {"references": ["http://ceur-ws.org/Vol-1695/paper2.pdf"]}
DOI: 10.34740/kaggle/dsv/4708249
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.21707783
title: Branching Angles on the Tibetan Plateau

description: Information for river basins analyzed on the eastern Tibetan Plateau, including x and y coordinates of each basin centroid based on the WGS 1984 coordinate system, mean aridity index AI, mean topographic slope <em>St</em> (°), mean channel slope <em>Sc</em> (°) and mean branching angles <em>α</em> (°) of each basin.
DOI: 10.6084/m9.figshare.21707783.v3
title: Branching Angles on the Tibetan Plateau

description: Information for river basins analyzed on the eastern Tibetan Plateau, including x and y coordinates of each basin centroid based on the WGS 1984 coordinate system, mean aridity index AI, mean topographic slope <em>St</em> (°), mean channel slope <em>Sc</em> (°) and mean branching angles <em>α</em> (°) of each basin.
DOI: 10.6084/m9.figshare.21707783.v2
title: Branching_angles_on_ETP.csv

description: Information for river basins on the eastern Tibetan Plateau, including x and y coordinates of each basin centroid based on the WGS 1984 coordinate system, mean aridity index AI, mean topographic slope <em>St</em> (°), mean channel slope <em>Sc</em> (°) and mean branching angles <em>α</em> (°) of each basin.
DOI: 10.5281/zenodo.7424573
title: Data for: Determining Young's modulus of arbitrarily-shaped granite samples using accurate grain-based modelling with Micro-RME

description: HaH 346 meteorite samples with shock melt veins are tested using the nanoindentation experiment with Berkovich indenter. The data includes Young's modulus of different rock-forming minerals measured by nanoindentation test and Raman spectrum data for jadeite and wadsleyite in HaH346 meteorite.
DOI: 10.5281/zenodo.7424572
title: Data for: Determining Young's modulus of arbitrarily-shaped granite samples using accurate grain-based modelling with Micro-RME

description: HaH 346 meteorite samples with shock melt veins are tested using the nanoindentation experiment with Berkovich indenter. The data includes Young's modulus of different rock-forming minerals measured by nanoindentation test and Raman spectrum data for jadeite and wadsleyite in HaH346 meteorite.
DOI: 10.6084/m9.figshare.21707849
title: Male position in a sexual network reflects mating role and body size

description: Network data and R script
DOI: 10.6084/m9.figshare.21707849.v1
title: Male position in a sexual network reflects mating role and body size

description: Network data and R script
DOI: 10.6084/m9.figshare.21707786
title: YouTube

description: dataset
DOI: 10.6084/m9.figshare.21707786.v2
title: YouTube

description: dataset
DOI: 10.6084/m9.figshare.21707786.v1
title: SMILE102-YouTube-excel.xlsx

description: The dataset is about the quality of the videos about Small Incision Lenticule Extraction (SMILE) surgery on the YouTube platform and its contribution to patients and surgeons.
DOI: 10.6084/m9.figshare.21707861
title: 2022 manuscript for Frontiers

description: reseach data
DOI: 10.5281/zenodo.7418619
title: MD Simulation data for a pure DOPC bilayer without salt with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids and 2880 water molecules. The trajectory is 201,61 ns long (20161 frames with 10 ps saving frequency).
DOI: 10.5281/zenodo.7418856
title: MD Simulation data for a pure DOPC bilayer (450 mM NaCl) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 450 mM NaCl with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 17 NaCl ions, and 2880 water molecules. The trajectory is 218,41 ns long (21841 frames with 10 ps saving frequency).
DOI: 10.5281/zenodo.7424247
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta datu masīvs pētījumam par LNB Mākslas krājuma atklātņu kolekciju

description: Datu kopa satur 200 LNB K. Ubāna Mākslas krātuves atklātņu kolekcijas priekšmetu izlasi un datus par kolekcijas sociālo apriti. To veido pastkaršu digitālās reprodukcijas, izlases saraksts un analīze esejas formātā. Attēlu failu nosaukumi atbilst LNB kataloga ierakstu numuriem, un tie ir redzami attēlu anotāciju sarakstā. Atlases pamatā ir pastkaršu izgatavošanas tehnika (fotogrāfijas), vēsturiskā pastkaršu fotopapīra aprite (1920.-1930. gadi) un priekšmetu biogrāfijas (lietošanas pēdas, sarakstes reversos). Izlase kopā ar eseju tiks publicēta izdevumā "Atmiņu topogrāfijas", un tā kalpo par analīzes materiālu izdevuma pavadošajām esejām, kā arī citām pētījuma publikācijām.
DOI: 10.5281/zenodo.7424246
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta datu masīvs pētījumam par LNB Mākslas krājuma atklātņu kolekciju

description: Datu kopa satur 200 LNB K. Ubāna Mākslas krātuves atklātņu kolekcijas priekšmetu izlasi un datus par kolekcijas sociālo apriti. To veido pastkaršu digitālās reprodukcijas, izlases saraksts un analīze esejas formātā. Attēlu failu nosaukumi atbilst LNB kataloga ierakstu numuriem, un tie ir redzami attēlu anotāciju sarakstā. Atlases pamatā ir pastkaršu izgatavošanas tehnika (fotogrāfijas), vēsturiskā pastkaršu fotopapīra aprite (1920.-1930. gadi) un priekšmetu biogrāfijas (lietošanas pēdas, sarakstes reversos). Izlase kopā ar eseju tiks publicēta izdevumā "Atmiņu topogrāfijas", un tā kalpo par analīzes materiālu izdevuma pavadošajām esejām, kā arī citām pētījuma publikācijām.
DOI: 10.5281/zenodo.7424655
title: MD Simulation data for a pure DOPC bilayer (450 mM CaCl2) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 450 mM CaCl2 with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 16 CaCl2 ions, and 2880 water molecules. The trajectory is 218,41 ns long (21841 frames with 10 ps saving frequency).
DOI: 10.5281/zenodo.7424173
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par mūzikas jomas ekosistēmām Latvijā datu masīvs

description: <strong>Mūzikas jomas dalībnieku aptaujas Latvijā (2022) tabulārie dati</strong> aptaujas veicējs: Pētījumu centrs SKDS aptaujas īstenošanas laiks: 2022. gada jūlijs-augusts mērķgrupa: mūzikas jomas pārstāvji Latvijā respondentu skaits (n): 365 metode: elektroniskā aptauja
DOI: 10.5281/zenodo.7424172
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par mūzikas jomas ekosistēmām Latvijā datu masīvs

description: <strong>Mūzikas jomas dalībnieku aptaujas Latvijā (2022) tabulārie dati</strong> aptaujas veicējs: Pētījumu centrs SKDS aptaujas īstenošanas laiks: 2022. gada jūlijs-augusts mērķgrupa: mūzikas jomas pārstāvji Latvijā respondentu skaits (n): 365 metode: elektroniskā aptauja
DOI: 10.5281/zenodo.7424730
title: MD Simulation data for a pure DOPC bilayer (1000 mM CaCl2) with AMOEBA force field + OpenMM

description: MD simulation data for the DOPC bilayer + 1000 mM CaCl2 with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 DOPC lipids, 36 CaCl2 ions, and 2880 water molecules. The trajectory is 218,41 ns long (21841 frames with 10 ps saving frequency).
DOI: 10.5281/zenodo.7415922
title: MD Simulation data for a pure POPE bilayer with AMOEBA force field + OpenMM

description: MD simulation data for the POPE bilayer with the AMOEBA-based force field developed by Li (https://doi.org/10.1080/00268976.2018.1436201). The simulation contains 72 POPE lipids and 2880 water molecules. The trajectory is 305,94 ns long (30594 frames with 10 ps saving frequency).
DOI: 10.6084/m9.figshare.21707945
title: Transcriptional fusions data from SINDy for delay-differential equations: application to model bacterial zinc response

description: We extend the data-driven method of sparse identification of nonlinear dynamics (SINDy) developed by Brunton <i>et al.</i>, <i>Proc. Natl Acad. Sci. USA</i> <b>113</b> (2016) to the case of delay differential equations (DDEs). This is achieved in a bilevel optimization procedure by first applying SINDy for fixed delay and then subsequently optimizing the error of the reconstructed SINDy model over delay times. We test the SINDy-delay method on a noisy short dataset from a toy DDE and show excellent agreement. We then apply the method to experimental data of gene expressions in the bacterium <i>Pseudomonas aeruginosa</i> subject to the influence of zinc. The derived SINDy model suggests that the increase in zinc concentration mainly affects the time delay and not the strengths of the interactions between the different agents controlling the zinc export mechanism.
DOI: 10.6084/m9.figshare.21707945.v1
title: Transcriptional fusions data from SINDy for delay-differential equations: application to model bacterial zinc response

description: We extend the data-driven method of sparse identification of nonlinear dynamics (SINDy) developed by Brunton <i>et al.</i>, <i>Proc. Natl Acad. Sci. USA</i> <b>113</b> (2016) to the case of delay differential equations (DDEs). This is achieved in a bilevel optimization procedure by first applying SINDy for fixed delay and then subsequently optimizing the error of the reconstructed SINDy model over delay times. We test the SINDy-delay method on a noisy short dataset from a toy DDE and show excellent agreement. We then apply the method to experimental data of gene expressions in the bacterium <i>Pseudomonas aeruginosa</i> subject to the influence of zinc. The derived SINDy model suggests that the increase in zinc concentration mainly affects the time delay and not the strengths of the interactions between the different agents controlling the zinc export mechanism.
DOI: 10.6084/m9.figshare.21707960
title: data_annotated_locations;code_data_processing_and_SSFs from Experience does not change the importance of wind support for migratory route selection by a soaring bird

description: Migration is a complex behaviour that is costly in terms of time, energy and risk of mortality. Thermal soaring birds rely on airflow, specifically wind support and uplift, to offset their energetic costs of flight. Their migratory routes are a record of movement decisions to negotiate the atmospheric environment and achieve efficiency. We expected that, regardless of age, birds use wind support to select their routes. Because thermal soaring is a complex flight behaviour that young birds need to learn, we expected that, as individuals gain more experience, their movement decisions will also increasingly favour the best thermal uplift conditions. We quantified how route choice during autumn migration of young European honey buzzards (<i>Pernis apivorus</i>) was adjusted to wind support and uplift over up to 4 years of migration and compared this to the choices of adult birds. We found that wind support was important in all migrations. However, we did not find an increase in the use of thermal uplifts. This could be due to the species-specific learning period and/or an artefact of the spatio-temporal scale of our uplift proxies.