cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8142620.v1
title: Additional file 4: of Addressing confounding artifacts in reconstruction of gene co-expression networks

description: Tutorial vignette to apply PC correction prior to network reconstruction in an example dataset. (HTML 726 kb)
DOI: 10.6084/m9.figshare.8142614
title: Additional file 3: of Addressing confounding artifacts in reconstruction of gene co-expression networks

description: Scale-free simulation with sample and gene numbers matched to GTEx (R notebook). (HTML 763Â kb)
DOI: 10.6084/m9.figshare.8142608
title: Additional file 2: of Addressing confounding artifacts in reconstruction of gene co-expression networks

description: Scale-free simulation (R notebook) (HTML 772 kb)
DOI: 10.6084/m9.figshare.8142608.v1
title: Additional file 2: of Addressing confounding artifacts in reconstruction of gene co-expression networks

description: Scale-free simulation (R notebook) (HTML 772 kb)
DOI: 10.6084/m9.figshare.8142572
title: Additional file 3: of Do four or more antenatal care visits increase skilled birth attendant use and institutional delivery in Bangladesh? A propensity-score matched analysis

description: Figure S1. Fig. 1 with data table (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8142572.v1
title: Additional file 3: of Do four or more antenatal care visits increase skilled birth attendant use and institutional delivery in Bangladesh? A propensity-score matched analysis

description: Figure S1. Fig. 1 with data table (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8142542
title: Additional file 1: of Using hierarchical spatial models to assess the occurrence of an island endemism: the case of Salamandra corsica

description: Data describing the characteristics of plant species found at the study sites. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8142542.v1
title: Additional file 1: of Using hierarchical spatial models to assess the occurrence of an island endemism: the case of Salamandra corsica

description: Data describing the characteristics of plant species found at the study sites. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8142506
title: Additional file 2: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

description: Nominally associated loci of Chinese and fibroblast samples. The file contains the loci ID and p value of each locus associated with nutritional deprivation in Chinese and fibroblast samples. (XLSX 4646 kb)
DOI: 10.6084/m9.figshare.8142506.v1
title: Additional file 2: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

description: Nominally associated loci of Chinese and fibroblast samples. The file contains the loci ID and p value of each locus associated with nutritional deprivation in Chinese and fibroblast samples. (XLSX 4646 kb)
DOI: 10.6084/m9.figshare.8142434
title: Additional file 2: of NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer

description: Comprehensive survey of ensemble ML, consensus filtering strategies and individual variant caller results across the four (S1 â S4) experiments. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.8142434.v1
title: Additional file 2: of NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer

description: Comprehensive survey of ensemble ML, consensus filtering strategies and individual variant caller results across the four (S1 â S4) experiments. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.8142317
title: Supplementary data sheet from Effects of major vein blockage and aquaporin inhibition on leaf hydraulics and stomatal conductance

description: All data generated or analysed during this study
DOI: 10.6084/m9.figshare.8142317.v1
title: Supplementary data sheet from Effects of major vein blockage and aquaporin inhibition on leaf hydraulics and stomatal conductance

description: All data generated or analysed during this study
DOI: 10.6084/m9.figshare.8142284
title: 3.4 micron Background Induced MCMC Prior Chain

description: Extragalactic background light (EBL) at 3.4 microns from galaxies as predicted using the mean spectral energy distribution (SED) of galaxies measured in Lake and Wright (2016, DOI: 10.21105/astro.1603.0729) and a Markov chain Monte Carlo (MCMC) prior chain for the Luminosity function (LF) from Lake et al. (2018b). The LF prior chain is unpublished, because the prior is analytically computable. The first column is the background from galaxies at redshifts closer than z=1 and the second column is the prediction from the same parameters closer than z=5, all in kilo-Janskies per steradian. The files are gzipped ( http://www.gzip.org/ ) IPAC tables ( http://irsa.ipac.caltech.edu/applications/DDGEN/Doc/ipac_tbl.html ). A full description of how these files were produced is in Lake et al. (2019, in preparation).<br>
DOI: 10.6084/m9.figshare.8142284.v1
title: 3.4 micron Background Induced MCMC Prior Chain

description: Extragalactic background light (EBL) at 3.4 microns from galaxies as predicted using the mean spectral energy distribution (SED) of galaxies measured in Lake and Wright (2016, DOI: 10.21105/astro.1603.0729) and a Markov chain Monte Carlo (MCMC) prior chain for the Luminosity function (LF) from Lake et al. (2018b). The LF prior chain is unpublished, because the prior is analytically computable. The first column is the background from galaxies at redshifts closer than z=1 and the second column is the prediction from the same parameters closer than z=5, all in kilo-Janskies per steradian. The files are gzipped ( http://www.gzip.org/ ) IPAC tables ( http://irsa.ipac.caltech.edu/applications/DDGEN/Doc/ipac_tbl.html ). A full description of how these files were produced is in Lake et al. (2019, in preparation).<br>
DOI: 10.6084/m9.figshare.8142278
title: Multinucleated giant cells at sciatic nerve

description: Multinucleated giant cells are counted per ROI at the sciatic nerve.
DOI: 10.6084/m9.figshare.8142278.v1
title: Multinucleated giant cells at sciatic nerve

description: Multinucleated giant cells are counted per ROI at the sciatic nerve.
DOI: 10.6084/m9.figshare.8142179
title: TFRC analysis at sciatic nerve

description: Multi-channel confocal imaging captures CD68 macrophage staining, transferrin receptor (TFRC) staining and the NIRF signal from nanomedicine. Macrophages are counted and the concurrent channel data is used to calculate those macrophages that are also positive for TFRC and nanomedicine.
DOI: 10.6084/m9.figshare.8142179.v1
title: TFRC analysis at sciatic nerve

description: Multi-channel confocal imaging captures CD68 macrophage staining, transferrin receptor (TFRC) staining and the NIRF signal from nanomedicine. Macrophages are counted and the concurrent channel data is used to calculate those macrophages that are also positive for TFRC and nanomedicine.
DOI: 10.6084/m9.figshare.8142173
title: CD40 analysis at sciatic nerve

description: Multi-channel confocal imaging captures CD68 macrophage staining, Cluster of differentiation 40 (CD40) staining and the NIRF signal from nanomedicine. Macrophages are counted and the concurrent channel data is used to calculate those macrophages that are also positive for CD40 and nanomedicine.
DOI: 10.6084/m9.figshare.8142173.v1
title: CD40 analysis at sciatic nerve

description: Multi-channel confocal imaging captures CD68 macrophage staining, Cluster of differentiation 40 (CD40) staining and the NIRF signal from nanomedicine. Macrophages are counted and the concurrent channel data is used to calculate those macrophages that are also positive for CD40 and nanomedicine.
DOI: 10.6084/m9.figshare.8142164
title: polar_motion_finite.dat

description: This is calculated polar motion excitations for great events with finite faults.
DOI: 10.6084/m9.figshare.8142164.v1
title: polar_motion_finite.dat

description: This is calculated polar motion excitations for great events with finite faults.
DOI: 10.6084/m9.figshare.8142161
title: polar_motion_point.dat

description: This is calculated coseismic polar motion excitations of great events with point sources.
DOI: 10.6084/m9.figshare.8142161.v1
title: polar_motion_point.dat

description: This is calculated coseismic polar motion excitations of great events with point sources.
DOI: 10.6084/m9.figshare.8142158
title: Prostaglandin E2 release at sciatic nerve

description: Particle counts of extracellular prostaglandin E2 in the sciatic nerve.
DOI: 10.6084/m9.figshare.8142158.v1
title: Prostaglandin E2 release at sciatic nerve

description: Particle counts of extracellular prostaglandin E2 in the sciatic nerve.
DOI: 10.6084/m9.figshare.8142140
title: COX-2 positive macrophages at the sciatic nerve

description: Multi-channel confocal imaging captures CD68 macrophage staining, COX-2 staining and the NIRF signal from nanomedicine. Macrophages are counted and the concurrent channel data is used to calculate those macrophages that are also positive for COX-2 and nanomedicine. <br>
DOI: 10.6084/m9.figshare.8142128
title: DomainCompiledFile.csv

description: Data set containing all domains identified by HMMER3.
DOI: 10.6084/m9.figshare.8142128.v1
title: DomainCompiledFile.csv

description: Data set containing all domains identified by HMMER3.
DOI: 10.6084/m9.figshare.8142125
title: Macrophage infiltration at sciatic nerve and DRG

description: Macrophages per ROI at the sciatic nerve and macrophages per cell body at the DRG are presented.
DOI: 10.6084/m9.figshare.8142125.v1
title: Macrophage infiltration at sciatic nerve and DRG

description: Macrophages per ROI at the sciatic nerve and macrophages per cell body at the DRG are presented.
DOI: 10.6084/m9.figshare.8142122
title: In-vivo NIRF imaging data

description: The right and left thigh of anesthetized rats were imaged with a preclinical fluorescence imager (LiCOR® Pearl Impulse from LI-COR Biosciences, Lincoln, NE) on day-11 and day-17 post-surgery, in day-12 and day-18 testing groups respectively. Images in the fluorescent channel (785 nm excitation for 820 nm emission) and a white light channel (to capture an image of the body of the rat) are acquired and merged in the LiCOR Pearl Impulse Software (version 2.0) with linked look-up-tables (LUT). In order to avoid non-specific fluorescence in the abdominal and thoracic region, animals were given a controlled research diet throughout the procedure (D10012G Research Diets, Inc. New Brunswick, NJ). NIRF images were analyzed using Image Studio Lite Software (LI-COR Biosciences, Lincoln, NE). Briefly, a region of interest (ROI) was selected over the sciatic nerve. Relative fluorescence of ROI was calculated by dividing the total fluorescence in the ROI by the area. Relative fluorescence of the testing groups is analyzed by one-way ANOVA, with a Tukey’s post hoc test to test multiple comparisons of group means. The confidence interval is set at 95%. Data are presented as mean ± SEM. The statistical software used is GraphPad Prism 6.
DOI: 10.6084/m9.figshare.8142122.v1
title: In-vivo NIRF imaging data

description: The right and left thigh of anesthetized rats were imaged with a preclinical fluorescence imager (LiCOR® Pearl Impulse from LI-COR Biosciences, Lincoln, NE) on day-11 and day-17 post-surgery, in day-12 and day-18 testing groups respectively. Images in the fluorescent channel (785 nm excitation for 820 nm emission) and a white light channel (to capture an image of the body of the rat) are acquired and merged in the LiCOR Pearl Impulse Software (version 2.0) with linked look-up-tables (LUT). In order to avoid non-specific fluorescence in the abdominal and thoracic region, animals were given a controlled research diet throughout the procedure (D10012G Research Diets, Inc. New Brunswick, NJ). NIRF images were analyzed using Image Studio Lite Software (LI-COR Biosciences, Lincoln, NE). Briefly, a region of interest (ROI) was selected over the sciatic nerve. Relative fluorescence of ROI was calculated by dividing the total fluorescence in the ROI by the area. Relative fluorescence of the testing groups is analyzed by one-way ANOVA, with a Tukey’s post hoc test to test multiple comparisons of group means. The confidence interval is set at 95%. Data are presented as mean ± SEM. The statistical software used is GraphPad Prism 6.
DOI: 10.6084/m9.figshare.8142113
title: Von Frey behavioral data

description: 50% paw withdrawal thresholds calculated from male Sprague Dawley rats at ~ 2 months old. Data is grouped by experiment, condition and time-point.
DOI: 10.6084/m9.figshare.8142113.v1
title: Von Frey behavioral data

description: 50% paw withdrawal thresholds calculated from male Sprague Dawley rats at ~ 2 months old. Data is grouped by experiment, condition and time-point.
DOI: 10.6084/m9.figshare.8142098
title: CCDB_6355.jpg

description: Electron micrograph of the cell body of a 0.25 um thick section through a cortical pyramidal neuron from the brain of a patient with Alzheimer's disease. The specimen was prepared from biopsy material obtained several decades ago.
DOI: 10.6084/m9.figshare.8142098.v1
title: CCDB_6355.jpg

description: Electron micrograph of the cell body of a 0.25 um thick section through a cortical pyramidal neuron from the brain of a patient with Alzheimer's disease. The specimen was prepared from biopsy material obtained several decades ago.
DOI: 10.6084/m9.figshare.8142092
title: CCDB_6354.jpg

description: Electron micrograph of the cell body of a 0.25 um thick section through a cortical pyramidal neuron from the brain of a patient with Alzheimer's disease. The specimen was prepared from biopsy material obtained several decades ago.
DOI: 10.6084/m9.figshare.8142092.v1
title: CCDB_6354.jpg

description: Electron micrograph of the cell body of a 0.25 um thick section through a cortical pyramidal neuron from the brain of a patient with Alzheimer's disease. The specimen was prepared from biopsy material obtained several decades ago.
DOI: 10.6084/m9.figshare.8142080
title: CCDB_6352.jpg

description: Reconstruction of cortical neurons from biopsy material obtained from Alzheimers disease patients
DOI: 10.6084/m9.figshare.8142080.v1
title: CCDB_6352.jpg

description: Reconstruction of cortical neurons from biopsy material obtained from Alzheimers disease patients
DOI: 10.26180/5cdde9bd59585
title: Wall Drawing

description: For String Quartet, Theremin and electronics.<br>Premiered by the Zephyr Quartet, November 2014, Adelaide ABC Classic FM studios.<br><em>"experimental music that radically challenges the way we think about music and performance and about the pervasive and seductive influence of new technologies".</em> Chris Reid, Realtime Arts. Read the full review here.<br><br>"outstanding visually and aurally, using state-of-the-art media and skilful artistic invention" John McBeath, The Adelaide Advertiser. Read the full review here.<br><em>“It might seem to some that color is synonymous with decoration, but I try to use color objectively…</em> <em>I do not use color for effect.”</em> Sol LeWitt, 2003.<br><br>This piece takes direct inspiration from the drawings of conceptual artist Sol LeWitt, and his statements that liken his art practice to that of composers of music. Using primary and secondary colour, and simple almost minimalist line drawing, the score contracts the short straight line with the curved continuous, as guides for musical structure. The piece was written during a residency at the Visby Centre for International Composers, supported by the AMC and ISCM.<br><br>
DOI: 10.26180/5cdde7b3ba992
title: Erst

description: For five piece ensemble, bass synth and electronics.<br>Premiered at the Perth Institute of Contemporary Arts. 5 September 2015.<br><br>An Erst is a term for the first swarm of bees. Ironically, it also means ‘long ago’ in old English - ironic because bee populations are dangerously low, a most likely consequence of matters such as the loss of flower meadows, mite attack, climate change, and the use of pesticides. Bees pollinate 70 of the around 100 crop species that feed 90% of the world.<br><br>This piece uses the patterns created by Erst’s as a score for the ensemble. Some are large clouds, others a small ones, depending on the country of origin and the health of bee populations. Drones are represented by a low sub tones throughout the work (in yellow). Like the bee populations themselves, these patterns fade in and out, sometimes hard to see or hear, in amongst the noise, until they disappear all together. <br><br>The piece is made up of five sections that re-organise on each iteration of the piece. The electronic part (blocks of colour) samples the instruments at predetermined times and plays them back in clouds. Spatialisation is a key component in the notation: colored panels represent the time for recording of each different instrument, which is then looped and played back and performed through a quadraphonic array. The piece also features a keyboard part, which runs direct to a subwoofer. The instrumental parts appear in a different order each time, and blend carefully between each section.
DOI: 10.6084/m9.figshare.8141864
title: CORPUS TOREO DISSERTAÇÃO BATISTA 2019.pdf

description: Corpus in Spanish for functionalist studies in Linguistics.
DOI: 10.6084/m9.figshare.8141864.v2
title: CORPUS TOREO DISSERTAÇÃO BATISTA 2019.pdf

description: Corpus in Spanish for functionalist studies in Linguistics.
DOI: 10.6084/m9.figshare.8141864.v1
title: CORPUS TOREO DISSERTAÇÃO BATISTA 2019.pdf

description: Corpus in Spanish for functionalist studies in Linguistics.
DOI: 10.6084/m9.figshare.8141840
title: Implications of liquid-liquid phase separation in plant chromatin organization and transcriptional control

description: ICE_normalized_insituHiC_Col_on_hyb_20k.zip:<br>The normalized Arabidopsis thaliana Hi-C matrix (20 kb) reported in: Zhu W, Hu B, Becker C, Dogan ES, Berendzen KW, Weigel D, Liu C: Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biol 2017, 18:157.<br>KEE.txt: <br>coordinates of KEEs reported in: Grob S, Schmid MW, Grossniklaus U: Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Mol Cell 2014, 55:678-693.<br>generate_Fig2_plots.R:R scripts to generate plots. (shown as panels a-d in file "Fig2.jpg"). It requires "KEE.txt" and "ICE_normalized_insituHiC_Col_on_hyb_20k" as input files.<br>
DOI: 10.6084/m9.figshare.8141819
title: Piranga mtDNA phylip files

description: There are the phylip files used for analysis in our Piranga mitogenome project
DOI: 10.6084/m9.figshare.8141819.v1
title: Piranga mtDNA phylip files

description: There are the phylip files used for analysis in our Piranga mitogenome project
DOI: 10.6084/m9.figshare.8141432
title: My Report Title

description: Introduction<br>Skype-a-scientist with 12th grade biology class <br><br>Methods<br>Skype<br><br>Results<br>I spoke to a 12th grade class in Millerstown, PA about my career, about DNA repair research and connections to cancer origins. <br><br>Discussion<br>The teacher, Rachel Troutman-Novinger, wrote: Thanks so much for your time! My students enjoyed it and appreciate your expertise. The research really is fascinating and as a high school teacher I sometimes feel like I just skim the surface of so much content and so I truly value the time and work that others like you have been able to put into this type of extensive research. <br><br>
DOI: 10.6084/m9.figshare.8139545
title: KneeXrayData

description: Knee X-ray images for knee joints detection and knee Kellgren and Lawrence grading.
DOI: 10.6084/m9.figshare.8139539
title: Dercylus praepilatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus praepilatus. </i>
DOI: 10.6084/m9.figshare.8139539.v2
title: Dercylus praepilatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus praepilatus. </i>
DOI: 10.6084/m9.figshare.8139539.v1
title: Dercylus praepilatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus praepilatus. </i>
DOI: 10.25919/5f028498c27ae
title: CSIRO Film Collection: videos 201 - 299 - compressed versions

description: CSIRO produced its first film in 1946. It was a two-hour, five-part epic in black and white designed for a specialist audience of Commonwealth scientists meeting in London. It showed them - in the most graphic way possible at the time - the nature and extent of the research facilities of an organisation embarking on the problems of post-war reconstruction. Within a few years, a permanent film unit was established and began to specialise in producing films for the specific audiences on particular areas of research. By the 1960's, it became apparent that many of the films were of interest to a much wider audience. Schools, colleges and universities were beginning to introduce the audio-visual medium to the learning process and CSIRO films were in increasing demand. Makers of television programmes looked to CSIRO films for images of science not yet accessible to the public eye.
DOI: 10.6084/m9.figshare.8139536
title: Dercylus orbiculatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus orbiculatus. </i>
DOI: 10.6084/m9.figshare.8139536.v2
title: Dercylus orbiculatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus orbiculatus. </i>
DOI: 10.6084/m9.figshare.8139536.v1
title: Dercylus orbiculatus data points

description: Raw data used for generating maximum entropy models for <i>Dercylus orbiculatus. </i>
DOI: 10.6084/m9.figshare.8139383
title: AquaSat

description: The AquaSat dataset is the largest inland water matchup dataset ever assembled. It pairs more than 600,000 in-situ observations with satellite imagery to provide a large-scale training dataset for continental scale remote sensing of water quality. The code to generate aquasat can be found here: https://github.com/GlobalHydrologyLab/watersat and the paper here: 10.1029/2019WR024883
DOI: 10.6084/m9.figshare.8139383.v1
title: AquaSat

description: The AquaSat dataset is the largest inland water matchup dataset ever assembled. It pairs more than 600,000 in-situ observations with satellite imagery to provide a large-scale training dataset for continental scale remote sensing of water quality. The code to generate aquasat can be found here: https://github.com/GlobalHydrologyLab/watersat and the paper here: 10.1029/2019WR024883
DOI: 10.6084/m9.figshare.8139362
title: Full harmonized in-situ datasets

description: There are two files in this dataset, both of which are part of the AquaSat dataset (paper DOI HERE) and code here: https://github.com/GlobalHydrologyLab/watersat<br>The first (wqp_lagos_unity.csv) is a dataset containing all merged observations in the LAGOS-NE databse (https://doi.org/10.1093/gigascience/gix101) and data from the Water Quality Portal. This includes concentration data for chlorophyll a (in ug/L), total suspended solids (in mg/L), dissolved organic carbon (in mg/L), and secchi disk depth (in m). There is also SiteID names for each observation. <br><br>The second dataset (wqp_long_with_methods) contains a long-form dataset of water quality portal data that includes potentially import additional information like depth of sample, original analytical method, and more. <br>
DOI: 10.6084/m9.figshare.8139359.v1
title: IPA scaffold files after selecting for mitochondrial proteins from the Scaffold software

description: IPA Proteomic Scaffold files of cFCMs 40 and 115 days vs 12 days, dFCMs 39 and 105 days Vs 12 days and Adult (90 days) vs neonate (1 day) selected for mitochondrial proteins by scaffold software.