cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13889296.v1
title: Additional file 1 of Integrated analyses of the transcriptome and small RNA of the hemiparasitic plant Monochasma savatieri before and after establishment of parasite-host association

description: Additional file 1: Fig. S1. Unigene sequence length distribution in the transcriptome of M. savatieri. Fig. S2. GO classification of all unigenes in M. savatieri. Fig. S3. Heatmap clustering and qRT-PCR analysis of DEGs in M. savatieri. (a) Transcript abundances of DEGs related to starch and sucrose metabolism. (b) Relative expression levels of DEGs related to starch and sucrose metabolism. (c) Transcript abundances of DEGs related to hormone signal transduction. (d) Relative expression levels of DEGs related to hormone signal transduction. (e) Transcript abundances of DEGs related to cell part. (f) Relative expression levels of DEGs related to cell part. The error bars of qRT-PCR data indicate the standard deviations of the three replicate determinations. Fig. S4. Nucleotide length distribution of small RNAs in M. savatieri. Fig. S5. The first base distribution of known miRNAs (a) and novel miRNAs (b) in M. savatieri. In the bar graphs, the X-axis represents the length of miRNA, the number shown on the bar represents the number of miRNA at this length. Fig. S6. Heatmap clustering and qRT-PCR analysis of miRNAs in M. savatieri. (a) Sequencing abundances of miRNAs related to biological regulation. (b) Relative expression levels of miRNAs related to biological regulation. (c) Sequencing abundances of miRNAs related to membrane and organelle. (d) Relative expression levels of miRNAs related to membrane and organelle. (e) Sequencing abundances of miRNAs related to metabolism. (f) Relative expression levels of miRNAs related to metabolism. The error bars of qRT-PCR data indicate the standard deviations of the three replicate determinations. Fig. S7. qRT-PCR analysis of miRNA target genes in M. savatieri. The error bars of qRT-PCR data indicate the standard deviations of the three replicate determinations. Table S1. Transcription factor families of the DEGs related to the biological processes in the BZ/AZ comparison of M. savatieri. Table S2. Specific primers of differentially expressed genes for qRT-PCR validation. Table S3. Specific primers of differentially expressed miRNAs for qRT-PCR validation. Table S4. Specific primers of target genes of differentially expressed miRNAs for qRT-PCR validation.
DOI: 10.5517/ccdc.csd.cc28kdnx
title: CCDC 2102099: Experimental Crystal Structure Determination

description: Related Article: Jin Xie, Zhong-Min Huang, Ji-Min Liu, Hang Xu, Fang-Fang Yang, Li-Dian Chen|2023|J.Cluster Sci.|34|1207|doi:10.1007/s10876-021-02199-x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.12299888.v1
title: Additional file 3 of Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

description: Additional file 3: Data set 2. Sequencing details.
DOI: 10.6084/m9.figshare.12299891
title: Additional file 4 of Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

description: Additional file 4: Data set 3. Sample details of enrolled participants.
DOI: 10.5522/04/25213640.v1
title: Dataset for "<i>SolarClub: Supporting Renewable Energy Communities through an Interactive Coordination System</i>"

description: This dataset provides 1) participant interview transcripts and 2) participant household electricity usage sensor data for the corresponding paper and presentation in the upcoming CHI 2024 conference.<br>
DOI: 10.6084/m9.figshare.12299654.v1
title: Additional file 7 of Integrated small RNA and mRNA expression profiles reveal miRNAs and their target genes in response to Aspergillus flavus growth in peanut seeds

description: Additional file 7: Table S4. Information of novel miRNAs identified from peanut miRNA libraries.
DOI: 10.6084/m9.figshare.12299885
title: Additional file 2 of Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

description: Additional file 2: Data set 1. Preliminary sequencing threshold of relative abundance.
DOI: 10.6084/m9.figshare.20688644
title: Additional file 5 of Full-length transcriptome-referenced analysis reveals crucial roles of hormone and wounding during induction of aerial bulbils in lily

description: Additional file 5: Data S3.
DOI: 10.3886/icpsr35246
title: Study of the Response of Small Businesses to State Health Insurance Exchanges, 2012-2013
title: Archival Version

description: This survey studied small businesses' health insurance offerings and their owners' knowledge about health insurance exchanges and other Affordable Care Act provisions in five of the states participating in the Robert Wood Johnson Foundation's State Health Reform Assistance Network: Alabama, Colorado, Minnesota, New York and Oregon. Statewide online and computer-assisted telephone interviews provided baseline information -- before the establishment of the ACA's individual or Small Business Health Options Program (SHOP) exchanges -- on the types of health insurance offered by small firms with 3 to 100 employees, which workers were offered insurance, and the cost of that coverage to the employer and employee. Other topics covered by the survey include the firms' characteristics, reasons for offering or not offering health insurance, claims for the ACA small business tax credit, general impressions of the ACA, changes the firms made to their health insurance benefits in response to ACA provisions, and whether the availability of coverage in the new individual and SHOP exchanges would influence their decisions to offer health insurance in the future.
description: The data file contains a single weight, the variable WT_SBHIX_Final, designed to produce state-specific estimates. WT_SBHIX_Final adjusts for the disproportionate selection of firms within strata, nonresponse to eligibility determination (either because a firm could not be located or refused to provided information on eligibility), and nonresponse to the interview among eligible firms.
description: Response Rates: 48 percent
description: A stratified random sample of firms with 3 to 100 employees was selected from the Dun and Bradstreet database. The sample was stratified by state (Alabama, Colorado, Minnesota, New York, and Oregon) and number of employees (3 to 5, 6 to 10, 11 to 15, 16 to 20, 21 to 25, 26 to 50, 51 to 75, and 76 to 100), 40 strata in all.
description: Datasets: 
DS1: Study of the Response of Small Businesses to State Health Insurance Exchanges, 2012-2013
description: Firms with 3 to 10 employees in Alabama, Colorado, Minnesota, New York, and Oregon.
description: computer-assisted telephone interview (CATI); web-based surveyThe principal investigator recoded many variables for reasons of confidentiality.
DOI: 10.3886/icpsr35246.v1
title: Study of the Response of Small Businesses to State Health Insurance Exchanges, 2012-2013
title: Version 1

description: This survey studied small businesses' health insurance offerings and their owners' knowledge about health insurance exchanges and other Affordable Care Act provisions in five of the states participating in the Robert Wood Johnson Foundation's State Health Reform Assistance Network: Alabama, Colorado, Minnesota, New York and Oregon. Statewide online and computer-assisted telephone interviews provided baseline information -- before the establishment of the ACA's individual or Small Business Health Options Program (SHOP) exchanges -- on the types of health insurance offered by small firms with 3 to 100 employees, which workers were offered insurance, and the cost of that coverage to the employer and employee. Other topics covered by the survey include the firms' characteristics, reasons for offering or not offering health insurance, claims for the ACA small business tax credit, general impressions of the ACA, changes the firms made to their health insurance benefits in response to ACA provisions, and whether the availability of coverage in the new individual and SHOP exchanges would influence their decisions to offer health insurance in the future.
description: The data file contains a single weight, the variable WT_SBHIX_Final, designed to produce state-specific estimates. WT_SBHIX_Final adjusts for the disproportionate selection of firms within strata, nonresponse to eligibility determination (either because a firm could not be located or refused to provided information on eligibility), and nonresponse to the interview among eligible firms.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Checked for undocumented or out-of-range codes..
description: Response Rates: 48 percent
description: Datasets: 
 
 DS1: Dataset
description: computer-assisted telephone interview (CATI), web-based survey 
The principal investigator recoded many variables for reasons of confidentiality.
description: Firms with 3 to 10 employees in Alabama, Colorado, Minnesota, New York, and Oregon.
description: A stratified random sample of firms with 3 to 100 employees was selected from the Dun and Bradstreet database. The sample was stratified by state (Alabama, Colorado, Minnesota, New York, and Oregon) and number of employees (3 to 5, 6 to 10, 11 to 15, 16 to 20, 21 to 25, 26 to 50, 51 to 75, and 76 to 100), 40 strata in all.
DOI: 10.3886/icpsr35246.v2
title: Study of the Response of Small Businesses to State Health Insurance Exchanges, 2012-2013
title: Version 2

description: This survey studied small businesses' health insurance offerings and their owners' knowledge about health insurance exchanges and other Affordable Care Act provisions in five of the states participating in the Robert Wood Johnson Foundation's State Health Reform Assistance Network: Alabama, Colorado, Minnesota, New York and Oregon. Statewide online and computer-assisted telephone interviews provided baseline information -- before the establishment of the ACA's individual or Small Business Health Options Program (SHOP) exchanges -- on the types of health insurance offered by small firms with 3 to 100 employees, which workers were offered insurance, and the cost of that coverage to the employer and employee. Other topics covered by the survey include the firms' characteristics, reasons for offering or not offering health insurance, claims for the ACA small business tax credit, general impressions of the ACA, changes the firms made to their health insurance benefits in response to ACA provisions, and whether the availability of coverage in the new individual and SHOP exchanges would influence their decisions to offer health insurance in the future.
description: The data file contains a single weight, the variable WT_SBHIX_Final, designed to produce state-specific estimates. WT_SBHIX_Final adjusts for the disproportionate selection of firms within strata, nonresponse to eligibility determination (either because a firm could not be located or refused to provided information on eligibility), and nonresponse to the interview among eligible firms.
description: Response Rates: 48 percent
description: A stratified random sample of firms with 3 to 100 employees was selected from the Dun and Bradstreet database. The sample was stratified by state (Alabama, Colorado, Minnesota, New York, and Oregon) and number of employees (3 to 5, 6 to 10, 11 to 15, 16 to 20, 21 to 25, 26 to 50, 51 to 75, and 76 to 100), 40 strata in all.
description: Datasets: 
DS1: Study of the Response of Small Businesses to State Health Insurance Exchanges, 2012-2013
description: Firms with 3 to 10 employees in Alabama, Colorado, Minnesota, New York, and Oregon.
description: computer-assisted telephone interview (CATI); web-based surveyThe principal investigator recoded many variables for reasons of confidentiality.
DOI: 10.6084/m9.figshare.12299888
title: Additional file 3 of Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

description: Additional file 3: Data set 2. Sequencing details.
DOI: 10.6084/m9.figshare.12299891.v1
title: Additional file 4 of Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

description: Additional file 4: Data set 3. Sample details of enrolled participants.
DOI: 10.6084/m9.figshare.20688644.v1
title: Additional file 5 of Full-length transcriptome-referenced analysis reveals crucial roles of hormone and wounding during induction of aerial bulbils in lily

description: Additional file 5: Data S3.
DOI: 10.6084/m9.figshare.20164682.v1
title: Additional file 1 of Clinical features and treatment outcome of wrist tuberculosis in adult- a retrospective study of 84 consecutive cases with minimum of 2 years follow up

description: Additional file 1.
DOI: 10.6084/m9.figshare.20164682
title: Additional file 1 of Clinical features and treatment outcome of wrist tuberculosis in adult- a retrospective study of 84 consecutive cases with minimum of 2 years follow up

description: Additional file 1.
DOI: 10.22002/ysy6v-3z173
title: JV1644 Legionella thyA ΔdotO

description: JV1644 Legionella thyA ΔdotO. Lacks dotO ATPase.
description: <strong>Tilt Series Date:</strong> 2016-06-14</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal at F30, Caltech.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine. Scrape cells off a plate, dissolve in the media, adjust the cell density to 0.6 and make a dilution series. Start O/N culture with all of them and freeze cells next day from the one in early stationary phase that is OD ~ 3.0.</p>
<strong>Sample Preparation:</strong> 8 grids were frozen for the JV1644 strain at OD~2.9. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-06-14-111/rawdata/</p>JV1644_150620164th0034.mrc,  Tilt Series (Pixel Size 3.9 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-06-14-111/rawdata/JV1644_150620164th0034.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV1644_150620164th0034.rec,  Reconstruction (Pixel Size 15.6 nm), 890.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-06-14-111/3dimage_75794/JV1644_150620164th0034.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/baqbd-n6306
title: Agro_AD1408_from plate_20150831

description: Agro_AD1408_GFP-VirB11 (Kan+AS plates, Mes pH5.8). Add 400 ul of induction media to one of the induction plates (containing lawn of Agrobacterium AD1408) and wash the plate by gently rolling the liquid. I had 20ug/ml Kan to keep the cells happier. Add gold to this: 1ul of gold to 4 ul of cells and freeze.
description: <strong>Tilt Series Date:</strong> 2015-08-31</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Strain constructed by Anath Das. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline. This data was collected at the Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grow AD1408 cells on AB solid medium (pH 7) at 30C. For induction, use one single colony and spread on induction plates (AB Mes pH 5.8) containing Kan (20ug/ml)+AS (200µM). Grow at 19C for 48 hr. Add 400 ul of induction media to one of the induction plates (containing lawn of Agrobacterium AD1408) and wash the plate by gently rolling the liquid. Add gold to this: 1ul of gold to 4 ul of cells, freeze.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2015-08-31-62/3dimage_61145/</p>AD1408_plate_new10014_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2015-08-31-62/3dimage_61145/AD1408_plate_new10014_full.rec"
        > <i class="download icon"></i> Download </a></p>

        AD1408_plate_new10014.mrc,  Tilt Series (Pixel Size 0.48 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2015-08-31-62/rawdata/AD1408_plate_new10014.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/a04a8-29w14
title: JV918 Legionella thyA ΔdotB

description: Legionella thyA ΔdotB. Lacks dotB ATPase.
description: <strong>Tilt Series Date:</strong> 2017-08-08</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal at F30, Caltech.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine. Scrape cells off a plate, dissolve in the media, adjust the cell density to 0.6 and make a dilution series. Start O/N culture with all of them and freeze cells next day from the one in early stationary phase that is OD ~ 3.0. This time cell density was ~2.6.</p>
<strong>Sample Preparation:</strong> 8 grids were frozen for this strain at OD~2.9. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-08-90/rawdata/</p>20170808_JV918b0093.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-08-90/rawdata/20170808_JV918b0093.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170808_JV918b0093_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-08-90/3dimage_87675/20170808_JV918b0093_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/bjpgd-dqn86
title: JV3572

description: Legionella thyA ΔdotD
description: <strong>Tilt Series Date:</strong> 2016-04-02</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine. Scrape cells off a plate, dissolve in the media, adjust the cell density to 0.6 and make a dilution series. Start O/N culture with all of them and freeze cells next day from the one in early stationary phase that is OD ~ 3.0</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV3572 strain (2x and 3x concentrated from OD-3 culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-04-02-108/rawdata/</p>dg20160331_3572_atlasd0003.mrc,  Tilt Series (Pixel Size 0.42 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-04-02-108/rawdata/dg20160331_3572_atlasd0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        dg20160331_3572_atlasd0003_full.rec,  Reconstruction (Pixel Size 1.68 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-04-02-108/3dimage_74141/dg20160331_3572_atlasd0003_full.rec"
        > <i class="download icon"></i> Download </a></p>