cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.869122
title: Long-term acclimation to elevated pCO2 alters carbon metabolism and reduces growth in the Antarctic diatom Nitzschia lecointei

description: Increasing atmospheric CO2 levels are driving changes in the seawater carbonate system, resulting in higher pCO2 and reduced pH (ocean acidification). Many studies on marine organisms have focused on short-term physiological responses to increased pCO2, and few on slow-growing polar organisms with a relative low adaptation potential. In order to recognize the consequences of climate change in biological systems, acclimation and adaptation to new environments are crucial to address. In this study, physiological responses to long-term acclimation (194 days, approx. 60 asexual generations) of three pCO2 levels (280, 390 and 960 µatm) were investigated in the psychrophilic sea ice diatom Nitzschia lecointei. After 147 days, a small reduction in growth was detected at 960 µatm pCO2. Previous short-term experiments have failed to detect altered growth in N. lecointei at high pCO2, which illustrates the importance of experimental duration in studies of climate change. In addition, carbon metabolism was significantly affected by the long-term treatments, resulting in higher cellular release of dissolved organic carbon (DOC). In turn, the release of labile organic carbon stimulated bacterial productivity in this system. We conclude that long-term acclimation to ocean acidification is important for N. lecointei and that carbon overconsumption and DOC exudation may increase in a high-CO2 world.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-30.
DOI: 10.1594/pangaea.911407
title: Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo

description: Heterosigma akashiwo is a raphidophyte known for forming ichthyotoxic blooms. In order to predict the potential impacts of rising CO2 on H. akashiwo it is necessary to understand the factors influencing growth rates over a range of CO2 concentrations. Here we examined the physiology and gene expression response of H. akashiwo to concentrations from 200 to 1000 ppm CO2. Growth rate data were combined from this and previous studies and fit with a CO2 limitation-inhibition model that revealed an apparent growth optimum around 600–800 ppm CO2. Physiological changes included a significant increase in C:N ratio at 800 ppm CO2 and a significant decrease in hydrogen peroxide concentration at 1000 ppm. Whole transcriptome sequencing of H. akashiwo revealed sharp distinctions in metabolic pathway gene expression between 600 and 800 ppm CO2. Hierarchical clustering by co-expression identified groups of genes with significant correlations to CO2 and growth rate. Genes with significant differential expression with CO2 included carbon concentrating mechanism genes such as beta-carbonic anhydrases and a bicarbonate transporter, which may underpin shifts in physiology. Genes involved in cell motility were significantly changed by both elevated CO2 and growth rate, suggesting that future ocean conditions could modify swimming behavior in this species.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-01-28.
description: Supplement to: Hennon, Gwenn M M; Williamson, Olivia M; Hernández Limón, María D; Haley, Sheean T; Dyhrman, Sonya T (2019): Non-linear Physiology and Gene Expression Responses of Harmful Alga Heterosigma akashiwo to Rising CO2. Protist, 170(1), 38-51
DOI: 10.1594/pangaea.868889
title: Distribution and functional traits of polychaetes in a CO2 vent system: winners and losers among closely related species

description: We report on fine taxonomic and functional analyses of polychaetes associated with rocky reefs along a gradient of ocean acidification (OA) at the volcanic CO2 vent system off the Castello Aragonese (Ischia Island, Italy). Percent cover of algae and sessile invertebrates (a determinant of polychaete distribution) was classified into functional groups to disentangle the direct effects of low pH on polychaete abundance from the indirect effects of pH on habitat and other species associations. A total of 6459 polychaete specimens belonging to 83 taxa were collected. Polychaete species richness and abundance dramatically dropped under the extreme low pH conditions due to the disappearance of both calcifying and non-calcifying species. Differences in distribution patterns indicate that the decreasing pH modified the structure and biological traits of polychaete assemblages independent of changes in habitat. A detailed taxonomic analysis highlighted species-specific responses to OA, with closely related species having opposing responses to decreasing pH. This resulted in an increase in the abundance of filter feeders and herbivores with decreasing pH, while sessile polychaetes disappeared in the extreme low pH zones, and were replaced by discretely motile forms. Reproductive traits of the polychaete assemblages changed as well, with brooding species dominating the most acidified zones. The few taxa that were abundant in extreme low pH conditions showed high tolerance to OA (e.g. Amphiglena mediterranea, Syllis prolifera, Platynereis cf. dumerilii, Parafabricia mazzellae, Brifacia aragonensis), and are promising models for further studies on the responses of benthic organisms to the effects of reduced pH.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Gambi, Maria Cristina; Musco, Luigi; Giangrande, Adriana; Badalamenti, F; Micheli, Florenza; Kroeker, Kristy J (2016): Distribution and functional traits of polychaetes in a CO2 vent system: winners and losers among closely related species. Marine Ecology Progress Series, 550, 121-134
DOI: 10.1594/pangaea.868737
title: Impact of ocean acidification on antimicrobial activity in gills of the blue mussel (Mytilus edulis)

description: Here, we aimed to investigate potential effects of ocean acidification on antimicrobial peptide (AMP) activity in the gills of Mytilus edulis, as gills are directly facing seawater and the changing pH (predicted to be reduced from 8.1 to 7.7 by 2100). The AMP activity of gill and haemocyte extracts was compared at pH 6.0, 7.7 and 8.1, with a radial diffusion assay against Escherichia coli. The activity of the gill extracts was not affected by pH, while it was significantly reduced with increasing pH in the haemocyte extracts. Gill extracts were also tested against different species of Vibrio (V. parahaemolyticus Vibrio tubiashii, V. splendidus and V. alginoyticus) at pH 7.7 and 8.1. The metabolic activity of the bacteria decreased by 65-90%, depending on species of bacteria, but was, as in the radial diffusion assay, not affected by pH. The results indicated that AMPs from gills are efficient in a broad pH-range. However, when mussels were pre-exposed for pH 7.7 for four month the gill extracts presented significantly lower inhibit of bacterial growth. A full in-depth proteome investigation of gill extracts, using LC-Orbitrap MS/MS technique, showed that among previously described AMPs from haemocytes of Mytilus, myticin A was found up-regulated in response to lipopolysaccharide, 3 h post injection. Sporadic occurrence of other immune related peptides/proteins also pointed to a rapid response (0.5?3 h p.i.). Altogether, our results indicate that the gills of blue mussels constitute an important first line defence adapted to act at the pH of seawater. The antimicrobial activity of the gills is however modulated when mussels are under the pressure of ocean acidification, which may give future advantages for invading pathogens.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-22.
description: Supplement to: Hernroth, Bodil; Baden, Susanne; Tassidis, H; Hörnaeus, K; Guillemant, J; Bergström Lind, S; Bergquist, Jonas (2016): Impact of ocean acidification on antimicrobial activity in gills of the blue mussel (Mytilus edulis). Fish & Shellfish Immunology, 55, 452-459
DOI: 10.1594/pangaea.901016
title: Seawater carbonate chemistry and respiration rate of Skagerrak invertebrates during experiments at Kristineberg, Sweden

description: Coastal hypoxia is a problem that is predicted to increase rapidly in the future. At the same time, we are facing rising atmospheric CO2 concentrations, which are increasing the pCO2 and acidity of coastal waters. These two drivers are well studied in isolation; however, the coupling of low O2 and pH is likely to provide a more significant respiratory challenge for slow moving and sessile invertebrates than is currently predicted. The Gullmar Fjord in Sweden is home to a range of habitats, such as sand and mud flats, seagrass beds, exposed and protected shorelines and rocky bottoms. Moreover, it has a history of both natural and anthropogenically enhanced hypoxia as well as North Sea upwelling, where salty water reaches the surface towards the end of summer and early autumn. A total of 11 species (Crustacean, Chordate, Echinoderm and Mollusc) of these ecosystems were exposed to four different treatments (high or low oxygen and low or high CO2; varying pCO2 of 450 and 1300 µatm and O2 concentrations of 2-3.5 and 9-10 mg/L) and respiration measured after 3 and 6 days, respectively. This allowed us to evaluate respiration responses of species of contrasting habitats to single and multiple stressors. Results show that respiratory responses were highly species specific as we observed both synergetic as well as antagonistic responses, and neither phylum nor habitat explained trends in respiratory responses. Management plans should avoid the generalized assumption that combined stressors will result in multiplicative effects and focus attention on alleviating hypoxia in the region.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-04-25.
DOI: 10.1594/pangaea.912848
title: Seawater carbonate chemistry and survival, growth and behavior of a coral reef fish

description: Recent studies demonstrate that diel CO2 cycles, such as those prevalent in many shallow water habitats, can potentially modify the effects of ocean acidification conditions on marine organisms. However, whether the interaction between elevated CO2 and diel CO2 cycles is further modified by elevated temperature is unknown. To test this, we reared juvenile spiny damselfish, Acanthochromis polyacanthus, for 11 weeks in two stable (450 and 1000 μatm) and two diel- cycling elevated CO2 treatments (1000 ± 300 and 1000 ± 500 μatm) at both current-day (29°C) and projected future temperature (31°C). We measured the effects on survivorship, growth, behavioral lateralization, activity, boldness and escape performance (fast starts). A significant interaction between CO2 and temperature was only detected for survivorship. Survival was lower in the two cycling CO2 treatments at 31°C compared with 29°C but did not differ between temperatures in the two stable CO2 treatments. In other traits we observed independent effects of elevated CO2, and interactions between elevated CO2 and diel CO2 cycles, but these effects were not influenced by temperature. There was a trend toward decreased growth in fish reared under stable elevated CO2 that was counteracted by diel CO2 cycles, with fish reared under cycling CO2 being significantly larger than fish reared under stable elevated CO2. Diel CO2 cycles also mediated the negative effect of elevated CO2 on behavioral lateralization, as previously reported. Routine activity was reduced in the 1000 ± 500 μatm CO2 treatment compared to control fish. In contrast, neither boldness nor fast-starts were affected by any of the CO2 treatments. Elevated temperature had significant independent effects on growth, routine activity and fast start performance. Our results demonstrate that diel CO2 cycles can significantly modify the growth and behavioral responses of fish under elevated CO2 and that these effects are not altered by elevated temperature, at least in this species. Our findings add to a growing body of work that highlights the critical importance of incorporating natural CO2 variability in ocean acidification experiments to more accurately assess the effects of ocean climate change on marine ecosystems.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-28.
DOI: 10.1594/pangaea.826455
title: Seawater carbonate chemistry and reproduction of a coral reef fish in a laboratory experiment

description: Ocean acidification is predicted to negatively impact the reproduction of many marine species, either by reducing fertilization success or diverting energy from reproductive effort. While recent studies have demonstrated how ocean acidification will affect larval and juvenile fishes, little is known about how increasing partial pressure of carbon dioxide (pCO2) and decreasing pH might affect reproduction in adult fishes. We investigated the effects of near-future levels of pCO2 on the reproductive performance of the cinnamon anemonefish, Amphiprion melanopus, from the Great Barrier Reef, Australia. Breeding pairs were held under three CO2 treatments [Current-day Control (430 µatm), Moderate (584 µatm) and High (1032 µatm)] for a 9-month period that included the summer breeding season. Unexpectedly, increased CO2 dramatically stimulated breeding activity in this species of fish. Over twice as many pairs bred in the Moderate (67% of pairs) and High (55%) compared to the Control (27%) CO2 treatment. Pairs in the High CO2 group produced double the number of clutches per pair and 67% more eggs per clutch compared to the Moderate and Control groups. As a result, reproductive output in the High group was 82% higher than that in the Control group and 50% higher than that in the Moderate group. Despite the increase in reproductive activity, there was no difference in adult body condition among the three treatment groups. There was no significant difference in hatchling length between the treatment groups, but larvae from the High CO2 group had smaller yolks than Controls. This study provides the first evidence of the potential effects of ocean acidification on key reproductive attributes of marine fishes and, contrary to expectations, demonstrates an initially stimulatory (hormetic) effect in response to increased pCO2. However, any long-term consequences of increased reproductive effort on individuals or populations remain to be determined.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2013-11-21.
description: Supplement to: Miller, Garielle M; Watson, Sue-Ann; McCormick, Mark I; Munday, Philip L (2013): Increased CO2 stimulates reproduction in a coral reef fish. Global Change Biology, 19(10), 3037-3045
DOI: 10.1594/pangaea.900729
title: Seawater carbonate chemistry and standard metabolic rate, ATP concentration, lactate concentration of Arctic krill Thysanoessa inermis

description: Areas of the Arctic Ocean are already experiencing seasonal variation in low pH/elevated pCO2and are predicted to be the most affected by future ocean acidification (OA). Krill play a fundamental ecological role within Arctic ecosystems, serving as a vital link in the transfer of energy from phytoplankton to higher trophic levels. However, little is known of the chemical habitat occupied by Arctic invertebrate species, and of their responses to changes in seawater pH. Therefore, understanding krill's responses to low pH conditions has important implications for the prediction of how Arctic marine communities may respond to future ocean change. Here, we present natural seawater carbonate chemistry conditions found in the late polar winter (April) in Kongsfjord, Svalbard (79°North) as well as the response of the Arctic krill, Thysanoessa inermis, exposed to a range of low pH conditions. Standard metabolic rate (measured as oxygen consumption) and energy metabolism markers (incl. adenosine triphosphate (ATP) and l-lactate) of T. inermis were examined. We show that after a 7 days experiment with T. inermis, no significant effects of low pH on MO2, ATP and l-lactate were observed. Additionally, we report carbonate chemistry from within Kongsfjord, which showed that the more stratified inner fjord had lower total alkalinity, higher dissolved inorganic carbon, pCO2 and lower pH than the well-mixed outer fjord. Consequently, our results suggest that overwintering individuals of T. inermis may possess sufficient ability to tolerate short-term low pH conditions due to their migratory behaviour, which exposes T. inermis to the naturally varying carbonate chemistry observed within Kongsfjord, potentially allowing T. inermis to tolerate future OA scenarios.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-04-25.
description: Supplement to: Venello, Theresa A; Calosi, Piero; Turner, Lucy M; Findlay, Helen S (2018): Overwintering individuals of the Arctic krill Thysanoessa inermis appear tolerant to short-term exposure to low pH conditions. Polar Biology, 41(2), 341-352
DOI: 10.1594/pangaea.868601
title: Biomineral shell formation under ocean acidification: a shift from order to chaos

description: Biomineral production in marine organisms employs transient phases of amorphous calcium carbonate (ACC) in the construction of crystalline shells. Increasing seawater pCO2 leads to ocean acidification (OA) with a reduction in oceanic carbonate concentration which could have a negative impact on shell formation and therefore survival. We demonstrate significant changes in the hydrated and dehydrated forms of ACC in the aragonite and calcite layers of Mytilus edulis shells cultured under acidification conditions (1000 µatm pCO2) compared to present day conditions (380 µatm pCO2). In OA conditions, Mytilus edulis has more ACC at crystalisation sites. Here, we use the high-spatial resolution of synchrotron X-ray Photo Emission Electron Microscopy (XPEEM) combined with X-ray Absorption Spectroscopy (XAS) to investigate the influence of OA on the ACC formation in the shells of adult Mytilus edulis. Electron Backscatter Diffraction (EBSD) confirms that OA reduces crystallographic control of shell formation. The results demonstrate that OA induces more ACC formation and less crystallographic control in mussels suggesting that ACC is used as a repair mechanism to combat shell damage under OA. However, the resultant reduced crystallographic control in mussels raises concerns for shell protective function under predation and changing environments.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-15.
DOI: 10.1594/pangaea.868603
title: Ocean acidification and temperature increase impact mussel shell shape and thickness: problematic for protection?

description: Ocean acidification threatens organisms that produce calcium carbonate shells by potentially generating an under-saturated carbonate environment. Resultant reduced calcification and growth, and subsequent dissolution of exoskeletons, would raise concerns over the ability of the shell to provide protection for the marine organism under ocean acidification and increased temperatures. We examined the impact of combined ocean acidification and temperature increase on shell formation of the economically important edible mussel Mytilus edulis. Shell growth and thickness along with a shell thickness index and shape analysis were determined. The ability of M. edulis to produce a functional protective shell after 9 months of experimental culture under ocean acidification and increasing temperatures (380, 550, 750, 1000 µatm pCO2, and 750, 1000 µatm pCO2 + 2°C) was assessed. Mussel shells grown under ocean acidification conditions displayed significant reductions in shell aragonite thickness, shell thickness index, and changes to shell shape (750, 1000 ?atm pCO2) compared to those shells grown under ambient conditions (380 ?atm pCO2). Ocean acidification resulted in rounder, flatter mussel shells with thinner aragonite layers likely to be more vulnerable to fracture under changing environments and predation. The changes in shape presented here could present a compensatory mechanism to enhance protection against predators and changing environments under ocean acidification when mussels are unable to grow thicker shells. Here, we present the first assessment of mussel shell shape to determine implications for functional protection under ocean acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-15.