cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7100969.v1
title: TEMPERATURE, LIGHT, AND DESICCATION TOLERANCE IN SEED GERMINATION OF Mauritia flexuosa L.F.

description: ABSTRACT Palm trees are widely used as ornamental plants, besides its sustainability and industry aspects. These plants are commercially propagated via seeds. Due to its importance and the need for seed germination information, this study aimed to verify the effect of temperature, light regimes, and desiccation tolerance on germination of Mauritia flexuosa L.f. For that, two completely randomized experiments were carried out. The first consisted of treatments arranged in a 6 x 2 factorial scheme, testing six temperatures (20, 25, 30, 35, 20-30, and 25-35 ºC) and light presence and absence. The second comprised five seed water contents (51, 48, 45, 30, and 26%) for desiccation tolerance evaluations. Water content measurements were made every three days, from a sample lot maintained at room temperature. In both trials, each treatment was composed of four replicates with 25 seeds per plot. Germination rate (GR) and germination speed index (GSI) were calculated, and the data were analyzed by analysis of variance (ANOVA). Temperature and light means were compared by the Tukey’s test (p &lt; 0.05), and the desiccation ones by a polynomial regression. The highest GR was observed at 20-30 ºC, regardless of light presence. Moreover, M. flexuosa seeds were sensitive to desiccation.
DOI: 10.6084/m9.figshare.7100963
title: Macular hemorrhage after roller coaster riding in a single-eyed patient with congenital glaucoma

description: ABSTRACT A 21-year-old female presented with a 4-day history of decreased vision in her only functional eye (right eye, OD). She had a history of multiple ocular surgeries in both eyes because of congenital glaucoma and had lost light perception in her left eye several years prior. Ophthalmological examination revealed 0.15 Snellen visual acuity, and fundoscopy revealed nearly total cupping and pallor of the optic disc and multiple retinal hemorrhagic foci in the macula in OD. Lesions spontaneously resolved over a few months. Gravitational forces during a roller coaster ride may have caused this macular hemorrhage.
DOI: 10.6084/m9.figshare.7100963.v1
title: Macular hemorrhage after roller coaster riding in a single-eyed patient with congenital glaucoma

description: ABSTRACT A 21-year-old female presented with a 4-day history of decreased vision in her only functional eye (right eye, OD). She had a history of multiple ocular surgeries in both eyes because of congenital glaucoma and had lost light perception in her left eye several years prior. Ophthalmological examination revealed 0.15 Snellen visual acuity, and fundoscopy revealed nearly total cupping and pallor of the optic disc and multiple retinal hemorrhagic foci in the macula in OD. Lesions spontaneously resolved over a few months. Gravitational forces during a roller coaster ride may have caused this macular hemorrhage.
DOI: 10.6084/m9.figshare.7100954
title: Selective laser trabeculoplasty as an initial treatment option for open-angle glaucoma

description: ABSTRACT Although eye drops are frequently used as an initial treatment option for open angle glaucoma (OAG), side effects, and poor adherence, among others, may compromise treatment efficacy. In this scenario, laser trabeculoplasty is an interesting therapeutic option for open angle glaucoma cases. Commonly used for many years as a last alternative prior to glaucoma incisional surgery, laser trabeculoplasty has been changing its indication after the advent of selective laser trabeculoplasty (SLT). In the current review, we critically evaluated the published data regarding the use of laser trabeculoplasty as a first treatment option for open angle glaucoma patients. Studies using SLT as a first-line treatment have encouraging findings. One-year efficacy results are comparable to those obtained with prostaglandin analogues, with a good safety profile. Although the laser´s effect is known to be transitory, recent data suggest it can be successfully repeated in cases with good response to the first SLT treatment.
DOI: 10.6084/m9.figshare.7100957
title: Dacryoliths causing intermittent epiphora associated with a patent lacrimal system

description: ABSTRACT We present two patients with dacryoliths and patent lacrimal drainage with intermittent tearing and without infection. Dacryoliths can be present in the lacrimal sac or lacrimal duct without acute or chronic inflammation. In these cases, we believe dacryolith formation was a causative factor of intermittent epiphora even with a patent drainage system, and we propose that dacryoliths and even fungal colonization formation may be the first event before dacryocystitis and should be considered as a cause of epiphora.
DOI: 10.6084/m9.figshare.7100957.v1
title: Dacryoliths causing intermittent epiphora associated with a patent lacrimal system

description: ABSTRACT We present two patients with dacryoliths and patent lacrimal drainage with intermittent tearing and without infection. Dacryoliths can be present in the lacrimal sac or lacrimal duct without acute or chronic inflammation. In these cases, we believe dacryolith formation was a causative factor of intermittent epiphora even with a patent drainage system, and we propose that dacryoliths and even fungal colonization formation may be the first event before dacryocystitis and should be considered as a cause of epiphora.
DOI: 10.6084/m9.figshare.7100954.v1
title: Selective laser trabeculoplasty as an initial treatment option for open-angle glaucoma

description: ABSTRACT Although eye drops are frequently used as an initial treatment option for open angle glaucoma (OAG), side effects, and poor adherence, among others, may compromise treatment efficacy. In this scenario, laser trabeculoplasty is an interesting therapeutic option for open angle glaucoma cases. Commonly used for many years as a last alternative prior to glaucoma incisional surgery, laser trabeculoplasty has been changing its indication after the advent of selective laser trabeculoplasty (SLT). In the current review, we critically evaluated the published data regarding the use of laser trabeculoplasty as a first treatment option for open angle glaucoma patients. Studies using SLT as a first-line treatment have encouraging findings. One-year efficacy results are comparable to those obtained with prostaglandin analogues, with a good safety profile. Although the laser´s effect is known to be transitory, recent data suggest it can be successfully repeated in cases with good response to the first SLT treatment.
DOI: 10.17608/k6.auckland.7100882
title: John Dory

description: John Dory sounds recorded in air and underwater
DOI: 10.17608/k6.auckland.7100882.v1
title: John Dory

description: John Dory sounds recorded in air and underwater
DOI: 10.6084/m9.figshare.7100525
title: A_dataset_of_multi_functional_ecological_traits_of_Brazilian_bees.csv

description: Here we provide a dataset of bees from mountainous areas of Carajás National Forest (eastern Amazon) and Nova Lima (Atlantic Forest). It is a compilation of sampling efforts from 1983 to 2018 through the accession of data stored in museum collections. In total, 222 and 144 bee species were recorded in Carajás and Nova Lima, respectively. This represents the most robust dataset of Brazilian bees including functional traits (body size, flight range, distribution, crop pollination, sociality and nesting) of 328 species. This dataset contributes to advances in the knowledge of the functional trait ecology of wild bees and can also benefit further studies that analyze the response of wild bees to land use change and its effects on the provision of crop pollination services. Validation procedures for the files can be found at: https://doi.org/10.17605/OSF.IO/CMJVX
DOI: 10.6084/m9.figshare.7100525.v1
title: A_dataset_of_multi_functional_ecological_traits_of_Brazilian_bees.csv

description: Here we provide a dataset of bees from mountainous areas of Carajás National Forest (eastern Amazon) and Nova Lima (Atlantic Forest). It is a compilation of sampling efforts from 1981 to 2017 through the accession of data stored in museum collections. In total, 218 and 184 bee species were recorded in Carajás and Nova Lima, respectively. This represents the most robust dataset of Brazilian bees including functional traits (body size, flight range, distribution, crop pollination, sociality and nesting) of 335 species. This dataset contributes to advances in the knowledge of the functional trait ecology of wild bees and can also benefit further studies that analyze the response of wild bees to land use change and its effects on the provision of crop pollination services.
DOI: 10.6084/m9.figshare.7100525.v2
title: A_dataset_of_multi_functional_ecological_traits_of_Brazilian_bees.csv

description: Here we provide a dataset of bees from mountainous areas of Carajás National Forest (eastern Amazon) and Nova Lima (Atlantic Forest). It is a compilation of sampling efforts from 1981 to 2017 through the accession of data stored in museum collections. In total, 218 and 184 bee species were recorded in Carajás and Nova Lima, respectively. This represents the most robust dataset of Brazilian bees including functional traits (body size, flight range, distribution, crop pollination, sociality and nesting) of 335 species. This dataset contributes to advances in the knowledge of the functional trait ecology of wild bees and can also benefit further studies that analyze the response of wild bees to land use change and its effects on the provision of crop pollination services.
DOI: 10.6084/m9.figshare.7100525.v3
title: A_dataset_of_multi_functional_ecological_traits_of_Brazilian_bees.csv

description: Here we provide a dataset of bees from mountainous areas of Carajás National Forest (eastern Amazon) and Nova Lima (Atlantic Forest). It is a compilation of sampling efforts from 1981 to 2018 through the accession of data stored in museum collections. In total, 222 and 144 bee species were recorded in Carajás and Nova Lima, respectively. This represents the most robust dataset of Brazilian bees including functional traits (body size, flight range, distribution, crop pollination, sociality and nesting) of 328 species. This dataset contributes to advances in the knowledge of the functional trait ecology of wild bees and can also benefit further studies that analyze the response of wild bees to land use change and its effects on the provision of crop pollination services.
DOI: 10.6084/m9.figshare.7098764
title: Atlas, TGP, geographically restricted variants

description: Allele age estimated using GEVA on data from the 1000 Genomes Project (TGP), for variants that are geographically restricted according to their population frequencies in different geographic regions; sampled across all autosomes.
DOI: 10.6084/m9.figshare.7098752
title: European and American Guidelines for Multiple Sclerosis Treatment

description: Full copyright for enhanced digital features is owned by the authors.<b><br></b> <strong>Article full text</strong><br> <br> The article associated with this content has been accepted for online publication and is in the final stages of production. The link to the full text will be made available on this page in the next few days. <br> <br> <strong>Provide enhanced digital features for this article</strong><br> If you are an author of this publication and would like to provide additional enhanced digital features for your article then please contact adisrapidplus@springer.com.<br> <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content.<br> <br> Other enhanced features include, but are not limited to:<br> • Slide decks<br> • Videos and animations<br> • Audio abstracts<br> • Audio slides
DOI: 10.6084/m9.figshare.7098752.v1
title: European and American Guidelines for Multiple Sclerosis Treatment

description: Full copyright for enhanced digital features is owned by the authors.<b><br></b> <strong>Article full text</strong><br> <br> The article associated with this content has been accepted for online publication and is in the final stages of production. The link to the full text will be made available on this page in the next few days. <br> <br> <strong>Provide enhanced digital features for this article</strong><br> If you are an author of this publication and would like to provide additional enhanced digital features for your article then please contact adisrapidplus@springer.com.<br> <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content.<br> <br> Other enhanced features include, but are not limited to:<br> • Slide decks<br> • Videos and animations<br> • Audio abstracts<br> • Audio slides
DOI: 10.6084/m9.figshare.7098737
title: Atlas, TGP, pathogenic variants

description: Allele age estimated using GEVA on data from the 1000 Genomes Project (TGP), for variants annotated by PolyPhen-2 and SIFT (information available through Ensembl), across all autosomes.
DOI: 10.6084/m9.figshare.7098698
title: Atlas, TGP, autosomal variants

description: Allele age estimated using GEVA on data from the 1000 Genomes Project (TGP), for variants sampled from all autosomes, but with Chromosome 20 completed.<br>
DOI: 10.6084/m9.figshare.7098680
title: Atlas, SGDP

description: Allele age estimated using GEVA on data from the Simons Genome Diversity Project (SGDP), for all autosomes.
DOI: 10.6084/m9.figshare.7098674
title: Diversity and inclusion in peer review and beyond

description: Here we present the raw data collected for the analysis on the gender of Wellcome Open Research peer reviewers for Peer Review Week.<br> There is also a presentation that summarises the main findings from the data collected, as well as a description of how Wellcome approaches diversity and inclusion in all aspects of research.<br>Michael Markie, F1000Gemma Tracey, Wellcome
DOI: 10.6084/m9.figshare.7098674.v2
title: Diversity and inclusion in peer review and beyond

description: Here we present the raw data collected for the analysis on the gender of Wellcome Open Research peer reviewers for Peer Review Week.<br> There is also a presentation that summarises the main findings from the data collected, as well as a description of how Wellcome approaches diversity and inclusion in all aspects of research.<br>Michael Markie, F1000Gemma Tracey, Wellcome
DOI: 10.6084/m9.figshare.7098665
title: Deemyad et al. 2018: Data from figures

description: Data from paper by Deemyad, Lüthi, and Spruston. Appearing in Nature Communications on Oct. 18, 2018.
DOI: 10.6084/m9.figshare.7098674.v1
title: Diversity and inclusion in peer review and beyond

description: Here we present the raw data collected for the analysis on the gender of Wellcome Open Research peer reviewers for Peer Review Week.<br> There is also a presentation that summarises the main findings from the data collected, as well as a description of how Wellcome approaches diversity and inclusion in all aspects of research.<br>Michael Markie, F1000Gemma Tracey, Wellcome
DOI: 10.6084/m9.figshare.7098665.v1
title: Deemyad et al. 2018: Data from figures

description: Data from paper by Deemyad, Lüthi, and Spruston. Appearing in Nature Communications on Oct. 18, 2018.
DOI: 10.6084/m9.figshare.7098602
title: Untitled Item

description: The preliminary genome and annotation of Propionibacterium australiense.<br>
DOI: 10.6084/m9.figshare.7098602.v1
title: Untitled Item

description: The preliminary genome and annotation of Propionibacterium australiense.<br>
DOI: 10.6084/m9.figshare.7098593
title: jv5.embl

description: The preliminary genome and annotation of Propionibacterium ruminifibrarum sp. nov. (type strain JV5T =DSM 106771T =TISTR 2629T).<br>
DOI: 10.6084/m9.figshare.7098593.v1
title: jv5.embl

description: The preliminary genome and annotation of Propionibacterium ruminifibrarum sp. nov. (type strain JV5T =DSM 106771T =TISTR 2629T).<br>
DOI: 10.6084/m9.figshare.7098575
title: Tables matching genes across mouse and human

description: Tables matching genes across mouse and human extracted from ENSEMBL. Allow for matching between genes and their paralogs between mouse and human.
DOI: 10.6084/m9.figshare.7098554
title: Supplementary Material for: Clinical Implication of Multi-Parameter Flow Cytometry in Myelodysplastic Syndromes

description: Myelodysplastic syndromes (MDS) are a challenging group of diseases for clinicians and researchers, as both disease course and pathobiology are highly heterogeneous. In (suspected) MDS patients, multi-parameter flow cytometry can aid in establishing diagnosis, risk stratification and choice of therapy. This review addresses the developments and future directions of multi-parameter flow cytometry scores in MDS. Additionally, we propose an integrated diagnostic algorithm for suspected MDS.
DOI: 10.6084/m9.figshare.7098551
title: Treg and Tmem scRNA-seq across tissues - 10X

description: 10X data from Treg and Tmem from different mouse tissues.<br>10X_all_data_preQC.rdata - a Seurat object with the complete quantified 10x data<br>all_data_cl_metadata.csv - a .csv file with the all the metadata used in the manuscript. Cells not present here but present in 10X_all_data_preQC.rdata were removed with QC. Column "cl_allCells" represents clustering of all cells together, Column "cl_tiss" represents clustering per tissue.<br>velocyto_10X_merged.loom - a .loom file with the results from running velocyto, which can then be loaded and analysed
DOI: 10.6084/m9.figshare.7098542
title: Treg and Tmem scRNA-seq across tissues - SS2

description: Smart-seq2 data from Treg and Tmem from different mouse and human tissues.<br>sr_list_noqc_SS2.rdata - a list of Seurat objects for the mouse colon, mouse skin, mouse melanoma, and human datasets, with columns on the metadata labelling them as passing QC and TCR presence filtering or not<br>sr_list_SS2.RData - a list of Seurat objects after QC for the mouse colon, mouse skin, mouse melanoma, and human datasets<br>onefilepercell_17805_#10_and_others_IXAOM.loom - a .loom file with the results from running velocyto, which can then be loaded and analysed
DOI: 10.6084/m9.figshare.7098542.v1
title: Treg and Tmem scRNA-seq across tissues - SS2

description: Smart-seq2 data from Treg and Tmem from different mouse and human tissues.<br>sr_list_noqc_SS2.rdata - a list of Seurat objects for the mouse colon, mouse skin, mouse melanoma, and human datasets, with columns on the metadata labelling them as passing QC and TCR presence filtering or not<br>sr_list_SS2.RData - a list of Seurat objects after QC for the mouse colon, mouse skin, mouse melanoma, and human datasets<br>onefilepercell_17805_#10_and_others_IXAOM.loom - a .loom file with the results from running velocyto, which can then be loaded and analysed
DOI: 10.6084/m9.figshare.7098551.v1
title: Treg and Tmem scRNA-seq across tissues - 10X

description: 10X data from Treg and Tmem from different mouse tissues.<br>10X_all_data_preQC.rdata - a Seurat object with the complete quantified 10x data<br>all_data_cl_metadata.csv - a .csv file with the all the metadata used in the manuscript. Cells not present here but present in 10X_all_data_preQC.rdata were removed with QC. Column "cl_allCells" represents clustering of all cells together, Column "cl_tiss" represents clustering per tissue.<br>velocyto_10X_merged.loom - a .loom file with the results from running velocyto, which can then be loaded and analysed
DOI: 10.6084/m9.figshare.7098353
title: MDX vs WT muscle ref genes All Cq and Rq data

description: A complete dataset of Cq (and derived RQ values) for a comprehensive screen of reference genes in healthy and dystrophic mice
DOI: 10.6084/m9.figshare.7098347
title: Assembly and annotation for great gerbil

description: Approximantely 86x coverage of Illumina paired end reads were assembled with ALLPATHS-LG resulting in a highly contiguous scaffold assembly. <br>An iterative automatic annotation with MAKER2 using a mouse cDNA set (Ensembl) and proteins from Uniprot/SwissProt resulted in 70,974 predicted gene models. InterProScan was run on the predicted predicted proteins and gene names were allocated based on match with proteins in UniProt/SwissProt. We filtered this set based on Annotation Edit Distance (AED) using the deafult filtering parameter, creating a file set containing all genes with AED less than 1 (AED&lt;1). This resulted in 22,393 gene models.<br>
DOI: 10.6084/m9.figshare.7098353.v1
title: MDX vs WT muscle ref genes All Cq and Rq data

description: A complete dataset of Cq (and derived RQ values) for a comprehensive screen of reference genes in healthy and dystrophic mice
DOI: 10.6084/m9.figshare.7098347.v1
title: Assembly and annotation for great gerbil

description: Approximantely 86x coverage of Illumina paired end reads were assembled with ALLPATHS-LG resulting in a highly contiguous scaffold assembly. <br>An iterative automatic annotation with MAKER2 using a mouse cDNA set (Ensembl) and proteins from Uniprot/SwissProt resulted in 70,974 predicted gene models. InterProScan was run on the predicted predicted proteins and gene names were allocated based on match with proteins in UniProt/SwissProt. We filtered this set based on Annotation Edit Distance (AED) using the deafult filtering parameter, creating a file set containing all genes with AED less than 1 (AED&lt;1). This resulted in 22,393 gene models.<br>
DOI: 10.6084/m9.figshare.7098224
title: Supplementary Material for: Tumour Expression of Histone Deacetylases in Uveal Melanoma

description: <b><i>Purpose:</i></b> To determine the expression of histone deacetylase enzymes in uveal melanoma tumour cells. <b><i>Procedures:</i></b> This is an observational immunohistochemical study of 16 formalin-fixed, paraffin-embedded eyes enucleated for uveal melanoma between January 2001 and March 2002. Haematoxylin and eosin paraffin sections were reviewed for histopathological parameters according to the American Joint Committee on Cancer 7th edition. Sections were then immunohistochemically stained for histone deacetylases 1, 2, 3, 4 and 6 and sirtuin 2 using an automated Leica Bond II platform and Fast Red chromogen, then digitally scanned using Aperio software before assessment of staining. <b><i>Results:</i></b> Nuclear expression of histone deacetylases 1, 2, 3, 4 and 6 and of sirtuin 2 was confirmed in uveal melanoma tumour cells. In addition, the tumour cells showed cytoplasmic expression of histone deacetylases 4 and 6 and sirtuin 2. Nuclear and cytoplasmic immunostaining was also seen in intraocular tissues uninvolved by the tumour. <b><i>Conclusion:</i></b> Uveal melanoma tumour cells express histone deacetylases 1, 2, 3, 4 and 6 and sirtuin 2, confirming potential tissue targets for histone deacetylase inhibitors.