cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22008/promice/data/ice_discharge/d/v02/o17a0l
title: region.nc

description: Regional discharge, coverage, and error. Git hash: ebd392c
DOI: 10.22008/promice/data/ice_discharge/d/v02/bxri7j
title: sector_coverage.csv

description: Sector coverage. Git hash: ebd392c
DOI: 10.22008/promice/data/ice_discharge/d/v02/cfmwca
title: sector_D.csv

description: Sector discharge. Git hash: ebd392c
DOI: 10.22008/promice/data/ice_discharge/d/v02/eqo5ky
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: ebd392c
DOI: 10.22008/promice/data/ice_discharge/d/v02/kofjqu
title: sector_err.csv

description: Sector error. Git hash: ebd392c
DOI: 10.5061/dryad.rxwdbrvc3
title: Turbidity and Colony Count of Acinetobacter baumannii suspensions after meropenem-based antibiotic combination exposure

description: Background: Carbapenems are the treatment of choice for
 multidrug-resistant (MDR) A. baumannii infection but are inadequate for
 carbapenem-resistant A.baumannii (CRAB) infections. Combination therapy
 came into the spotlight in the last decade. This study compares the colony
 count reduction after exposure to meropenem-based antibiotics in
 clinically achieved concentration with the time-kill test. Results: A
 bactericidal effect was achieved in isolates that were intermediate to
 ampicillin sulbactam at the administration of meropenem and
 ampicillin-sulbactam with a 2 MIC + 2 MIC. The combination of meropenem
 and ampicillin-sulbactam showed a bacteriostatic effect in isolates
 resistant to both antibiotics. The bactericidal effect was not achieved
 when meropenem and amikacin were administered to isolates that were
 intermediate or resistant to meropenem and amikacin. Conclusion: There is
 a significant difference in the colony count reduction between groups of
 A. baumannii isolates after exposure to antibiotic combinations.
description: These data represent the turbidity and colony count data of the
 Acinetobacter baumannii test suspension after being subjected to the
 combination antibiotic meropenem + ampicillin-sulbactam and meropenem +
 amikacin. Data were obtained from six replications formatted in Microsoft
 Excel and then processed with IBM SPSS Statistics 23.
 This experimental
 laboratory study was conducted on ATCC 19606 isolate and three clinical
 isolates with different antibiotic susceptibility types. Meropenem and
 ampicillin-sulbactam as well as meropenem and amikacin in concentrations
 of ½ MIC + ½ MIC, 1 MIC + 1 MIC, 2 MIC + 2 MIC, and 2 MIC + ½ MIC were
 tested against isolates. Turbidity measurements were made at the
 predetermined time point of 0, 1, 2, 4, 6, 8, and 24 hours after exposure;
 bacterial concentration was enumerated
 using the agar plate method. Six replications
 were performed, and the results were plotted in a time-kill
 curve.
description: Data formatted in Microsoft Excel and then analysed with IBM SPSS
 Statistics 23. Images created with the GraphPad Prism 9 App.
DOI: 10.22008/promice/data/ice_discharge/d/v02/stxlwo
title: gate_coverage.csv

description: Gate coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/tmzuo4
title: gate_D.csv

description: Gate discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/uxu2hv
title: gate_err.csv

description: Gate errors. Git hash: 13d7d36
DOI: 10.5061/dryad.sbcc2fr90
title: The role of reed management and habitat quality on brood parasitism and chick survival of the brood parasitic Common Cuckoo

description: Despite efforts on ecosystem restoration and management, biodiversity loss
 remains one of the major environmental concerns of our time. Beyond the
 focus on threatened species, animals that indicate regional biodiversity
 hotspots and population trends, such as brood parasites, should also be
 targeted by conservation actions. We studied how reed habitat quality and
 management influence brood parasitism rate and offspring survival in
 Common Cuckoos Cuculus canorus parasitizing nests of Great Reed Warblers
 Acrocephalus arundinaceus. In six reed habitats in an intensive
 agricultural landscape. Data collected from 45 sites over 13 years showed
 that the brood parasitism rate was highest on large canals and was
 positively influenced by the availability of potential perches (Cuckoo
 vantage points) and the height where host nests were built. Cuckoo chick
 survival decreased with water depth and was not affected by other factors.
 Our results suggest that the habitat-dependent detectability of host nests
 was central in brood parasitism rate and that water level was central in
 Cuckoo chick survival. Our study shows that a maintenance of intermediate
 water levels is the most optimal for maintaining Cuckoo populations in
 intensive agricultural landscapes. Because brood parasites are excellent
 bioindicators as their presence predicts regional hotspots of taxonomic
 and functional diversity as well as population trends in bird communities,
 knowledge on their habitat requirements is relevant in management
 targeting diverse bird communities.
DOI: 10.22008/promice/data/ice_discharge/d/v02/789ty8
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/ckgwji
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/nqmgp1
title: GIS_D.csv

description: Greenland discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/0jadks
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/wzi2lt
title: GIS_err.csv

description: Greenland error. Git hash: 13d7d36
DOI: 10.5061/dryad.cz8w9gj61
title: Data from: Neuropeptide signalling shapes feeding and reproductive behaviours in male C. elegans

description: Sexual dimorphism occurs where different sexes of the same species display
 differences in characteristics not limited to reproduction. For the
 nematode Caenorhabditis elegans, in which the complete
 neuroanatomy has been solved for both hermaphrodites and males, sexually
 dimorphic features have been observed both in terms of the number of
 neurons and in synaptic connectivity. In addition, male behaviours, such
 as food-leaving to prioritise searching for mates, have been attributed to
 neuropeptides released from sex-shared or sex-specific neurons. This
 dataset compiles the results obtained in our investigation of how LURY-1
 neuropeptides regulate feeding and mating behaviours in C. elegans. These
 contain confocal micrographs and z-stacks of fluorescence
 reporter imaging used to demonstrate the expression pattern
 of lury-1 and npr-22, including
 micrographs used for cell identification
 of lury-1 expressing neurons in the male worm.
 Other behavioural data from mating efficiency assays, pharyngeal
 pumping assays and food leaving assays are also shown. These include male
 turning behaviour examined through video recordings of male mating; the
 videos are also included as part of this dataset. In this study
 (“Neuropeptide signalling shapes feeding and reproductive behaviours in
 male C. elegans”), our findings indicate sex-specific roles of
 this peptide in feeding and reproduction in C. elegans.
 This provides further insight into neuromodulatory control of
 sexually dimorphic behaviours.
description: 1) Behavioural data was collected using experimental procedures
 described in detail in Methods section 2) Confocal
 imaging was collected on a Zeiss LSM 710/810/880 or Leica SP8
 3) Video tracking was obtained using the single worm tracker
 (https://www.nature.com/articles/nmeth.2560)
description: Spreadsheets can be opened using Microsoft Excel or
 similar Confocal images can be opened with
 ImageJ Videos can be opened with VLC player
DOI: 10.22008/promice/data/ice_discharge/d/v02/qsuhd7
title: region_coverage.csv

description: Regional coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/wvzdiu
title: README.txt

description: README. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/x2lo9g
title: region_D.csv

description: Regional discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/aebq7j
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/lskh6t
title: region_err.csv

description: Regional error. Git hash: 13d7d36
DOI: 10.5061/dryad.70rxwdc15
title: Benefit of introgression depends on genetic variation in cereal breeding programs

description: We investigated the benefit from introgression of external lines into a
 cereal breeding program and strategies that accelerated introgression of
 the favourable alleles while minimising linkage drag using stochastic
 computer simulation. We simulated genomic selection for disease resistance
 and grain yield in two environments with a high level of
 genotype-by-environment (G×E) for the latter trait, using genomic data of
 a historical barley breeding program as the base generation. Two
 populations (existing and external) were created from this base population
 with different allele frequencies for few (N=10) major and many (N~990)
 minor simulated disease quantitative trait loci (QTL).  The major
 disease QTL only existed in the external population and lines from the
 external population were introgressed into the existing population which
 had minor disease QTL with low, medium, and high allele frequencies. The
 study revealed that the benefit of introgression depended on the level of
 genetic variation for the target trait in the existing cereal breeding
 program. Introgression of external resources into the existing population
 was beneficial only when the existing population lacked variation in
 disease resistance or when minor disease QTL were already at medium or
 high frequency. When minor disease QTL were at low frequencies, no extra
 genetic gain was achieved from introgression. More benefit in the disease
 trait was obtained from the introgression if the major disease QTL had
 larger effect sizes, more selection emphasis was applied on disease
 resistance, or more external lines were introgressed. While our strategies
 to increase introgression of major disease QTL were generally successful,
 most were not able to completely avoid negative impacts on selection for
 grain yield with the only exception being when major introgression QTL
 effects were very large. Breeding programs are advised to carefully
 consider the level of genetic variation in a trait available in their
 breeding program before deciding to introgress germplasms.
DOI: 10.22008/promice/data/ice_discharge/d/v02/iefmmu
title: sector_D.csv

description: Sector discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/u2ry03
title: sector_coverage.csv

description: Sector coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/xj8owi
title: sector_err.csv

description: Sector error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/tq79de
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/ypchkr
title: gate_coverage.csv

description: Gate coverage. Git hash: 13d7d36
DOI: 10.5061/dryad.r7sqv9sfm
title: Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification

description: The accurate delimitation of species boundaries in non-bilaterian marine
 taxa is notoriously difficult, with consequences for many studies in
 ecology and evolution. Anthozoans are a diverse group of key structural
 organisms worldwide, but the lack of reliable morphological characters and
 informative genetic markers hampers our ability to understand species
 diversification. We investigated population differentiation and species
 limits in Atlantic (Iberian Peninsula) and Mediterranean lineages of the
 octocoral genus Paramuricea previously identified as P. clavata. We used a
 diverse set of molecular markers (microsatellites, RNA-seq derived
 single-copy orthologues [SCO] and mt-mutS [mitochondria]) at 49 locations.
 Clear segregation of Atlantic and Mediterranean lineages was found with
 all markers. Species-tree estimations based on SCO strongly supported
 these two clades as distinct, recently diverged sister species with
 incomplete lineage sorting, P. cf. grayi and P. clavata, respectively.
 Furthermore, a second putative (or ongoing) speciation event was detected
 in the Atlantic between two P. cf. grayi colour morphotypes (yellow and
 purple) using SCO and supported by microsatellites. While segregating P.
 cf. grayi lineages showed considerable geographic structure, dominating
 circalittoral communities in southern (yellow) and western (purple)
 Portugal, their occurrence in sympatry at some localities suggests a
 degree of reproductive isolation. Overall, our results show that previous
 molecular and morphological studies have underestimated species diversity
 in Paramuricea occurring in the Iberian Peninsula, which has important
 implications for conservation planning. Finally, our findings validate the
 usefulness of phylotranscriptomics for resolving evolutionary
 relationships in octocorals.
DOI: 10.22008/promice/data/ice_discharge/d/v02/h4wzrb
title: gate_D.csv

description: Gate discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/efsutv
title: gate_err.csv

description: Gate errors. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/gewpfx
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 13d7d36
DOI: 10.5061/dryad.59zw3r2b5
title: A new theoretical performance landscape for suction feeding reveals adaptive kinematics in a natural population of reef damselfish

description: Understanding how organismal traits determine performance
 and, ultimately, fitness is a fundamental goal of
 evolutionary ecomorphology. However, multiple traits can interact in
 non-linear and context-dependent ways to affect performance, hindering
 efforts to place natural populations with respect to performance peaks or
 valleys. Here, we used an established mechanistic model of suction-feeding
 performance (SIFF) derived from hydrodynamic principles to estimate a
 theoretical performance landscape for zooplankton prey capture. This
 performance space can be used to predict prey capture performance for any
 combination of six morphological and kinematic trait values. We then
 mapped in situ high-speed video observations of suction feeding in a
 natural population of a coral reef zooplanktivore, Chromis viridis, onto
 the performance space to estimate the population’s location with respect
 to the topography of the performance landscape. Although the kinematics of
 the natural population closely matched regions of high performance in the
 landscape, the population was not located on a performance peak.
 Individuals were furthest from performance peaks on the peak gape, ram
 speed and mouth opening speed trait axes. Moreover, we found that the
 trait combinations in the observed population were associated
 with higher performance than expected by chance, suggesting that these
 combinations are under selection. Our results provide a framework for
 assessing whether natural populations occupy performance optima.
description: Data is feeding kinematics for 110 Chromis viridis individuals
 filmed underwater while feeding undisturbed on natural prey. data was
 obtained using a pair of high-speed underwater cameras that were
 calibrated to generate 3D coordinates. from digitized landmarks we determined: (1)
 maximum gape, defined as the maximum diameter of the fish’s mouth; (2)
 time to peak gape (TTPG), defined as the time to open its mouth from 20%
 to 95% of peak gape; (3) maximum jaw protrusion measured during the strike
 from the fish’s frame of reference; (4) time to peak jaw protrusion
 (TTPJP), defined as the time it took the fish to protrude its jaws from
 20% to 95% of maximum jaw protrusion; (5) ram speed, defined as the fish’s
 swimming speed during the strike (i.e. from mouth opening to closing); and
 (6) timing of peak protrusion, defined as the difference between the time
 of maximum gape and time of maximal jaw protrusion . Calculations were
 made as described in Holzman et al. (2008)
DOI: 10.22008/promice/data/ice_discharge/d/v02/lwtpdj
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/t5herk
title: GIS_D.csv

description: Greenland discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/sv6dd5
title: GIS_err.csv

description: Greenland error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/5lvoku
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/ktqvsg
title: region_coverage.csv

description: Regional coverage. Git hash: 13d7d36
DOI: 10.5061/dryad.h18931zpg
title: Flower strips and remnant semi-natural vegetation have different impacts on pollination and productivity of sunflower crops

description: Intensification of agricultural landscapes to fulfil increased global food
 demands has dramatically impacted biodiversity and ecosystem services.
 Several pollinator groups, which are vital for the maintenance of
 pollinator-dependent crops, have been severely affected by this
 intensification process. Management tools, such as the implementation of
 agri-environmental schemes, have been widely proposed to improve
 pollinator's communities and pollination services, although the
 effectiveness of wildflower strips in comparison to existing natural or
 semi-natural habitats and the impact on yield has not been fully
 demonstrated. Here, we aimed to assess the effect of flower strips
 implementation near sunflower fields in two intensive agricultural regions
 and to quantify their impact on visitation rates and sunflower
 productivity. Data were obtained in two regions in Spain (Burgos and
 Cuenca) in sunflower fields with associated semi-natural vegetation
 (SNVs), with implemented wildflower strips (WFSs) and without vegetation
 structures (NonVs). Visitation rates were monitored over two years by
 direct observations, and both sunflower seed production and weight were
 assessed in 52 fields per year. Our results revealed regional and
 inter-annual variation in visitation rates, likely driven by structural
 differences in the landscapes studied. In Cuenca, characterized by more
 heterogeneous and floral resources-richer landscapes, the effects of WFSs
 were significant in the second year of implementation, with higher
 visitation rates and higher productivity values in fields with implemented
 wildflower strips compared to those without. In contrast, in Burgos, no
 consistent effects among field treatments across years were observed.
 Synthesis and applications. The implementation of flower strips or
 maintenance of remnant semi-natural habitats adjacent to sunflower fields,
 showed context-dependent effects on visitation rates and crop yield. In
 highly simplified agroecosystems, these interventions may be insufficient
 or may need longer times to produce significant effects. Yet, in regions
 where natural and semi-natural patches were already present, the
 implementation of flower strips was a successful strategy to promote
 pollinators and sunflower productivity.
description: These data were collected between 2017 and 2018, in two
 agricultural regions in Spain (Burgos and Cuenca). A total of 104
 sunflower fields (52 per year) were selected with these following
 treatments: SNV (fields with remnant semi-natural vegetation), WFS (fields
 where wild flower strips were implemented) and NonV (fields without
 vegetation). Visitation rates were obtained through direct observations of
 sunflower-pollinator interactions (<em>Apis mellifera</em> and
 wild bees), and productivity was estimated through both seeds number and
 weight. Data analyses were performed in R software. 
description: Microsoft Excel
DOI: 10.22008/promice/data/ice_discharge/d/v02/hpgmxk
title: region_D.csv

description: Regional discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/4ndqsv
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/8zxsvn
title: region_err.csv

description: Regional error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/1xsrrz
title: sector_coverage.csv

description: Sector coverage. Git hash: 13d7d36
DOI: 10.5061/dryad.rv15dv49h
title: Micro and macroclimatic constraints on the activity of a vulnerable tortoise: a mechanistic approach under a thermal niche view

description: 1. Thermal constraints imposed by the environment limit the activity time
 of ectotherms and have been a central issue in ecophysiology. Assessing
 these restrictions is key to determining the vulnerability of species to
 changing thermal niches and developing conservation strategies. 2. We
 generate an explicit tortoise model of thermal constraints at both micro
 and macroclimate scales based on thermophysiology parameters and
 environmental operative temperatures during a biologically significant
 period. As a study model, we use a vulnerable species of gopher tortoise
 (Gopherus evgoodei), whose primary habitat is the tropical dry forests in
 northwestern Mexico. 4. Our mechanistic model is based on a monitoring of
 5-years of environmental operative temperatures (Te). Here, we use the
 hours of activity (ha) and hours of thermal restriction (hr), calculated
 from the voluntary temperature range of G. evgoodei with respect to Te, to
 project and compare the thermal constraints across space and time. In
 addition, this model was projected using a pessimistic climate change
 scenario for 2070 (RCP 8.5). 5. The results show that the period of
 activity of G. evgoodei, predicted by ha and hr, is limited by the
 frequency and availability of Te and differs significantly throughout the
 year and among years. In addition, under the RCP 8.5 scenario, we predict
 that hr will increase considerably and exceed the critical value (3.11 hr)
 placing this species as highly vulnerable. 6. We discuss and compare the
 period of potential activity, thermoregulation strategies, and costs and
 benefits with other Gopherus species. Finally, we identify critical areas
 to develop management strategies for protecting this Mexican endemic
 tortoise.
description: The data correspond to the hours of activity and restriction
 throughout the distribution of the tortoise Gopherus evgoodei according to
 our ecophysiological models. These data were calculated according to the
 protocol of Sinervo et al 2010. Science. 328(5980), 894-899. A detailed
 description of the data collection can be seen in Lara-Reséndiz, et al.
 2022. Journal of Thermal Biology, 104, 103192. In addition, a polygon of
 this gopher tortoise's distribution and layers with ecophysiological
 models is included here. Which were developed with R and QGIS
 software.
description: Spreadsheet processor (eg, Excel), R, and QGIS.
DOI: 10.22008/promice/data/ice_discharge/d/v02/blp9cp
title: sector_err.csv

description: Sector error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/larc3d
title: sector_D.csv

description: Sector discharge. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/obd6qw
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/qsrb86
title: gate_coverage.csv

description: Gate coverage. Git hash: 13d7d36
DOI: 10.22008/promice/data/ice_discharge/d/v02/u8cf5o
title: gate_D.csv

description: Gate discharge. Git hash: 13d7d36