cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4005642
title: PacBio amplicon re-sequencing of 62 P. tricornutum genomic loci – processed datasets

description: Processed datasets from PacBio amplicon re-sequencing of 62 P. tricornutum genomic loci. Raw data are available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA658511. Available datasets: - reference file for regions selected for amplicon sequencing: <em>Phaeodactylum_tricornutum_amplicon_sequencing_loci.fa</em> - final .bam files containing processed PacBio sequencing reads aligned to the reference: <em>PacBio_amplicon_seq_T1.bam</em> and <em>PacBio_amplicon_seq_T6.bam</em> - . table files with the position, reference and alternative allele for reliable biallelic SNPs selected in ILLUMINA sequencing of the culture at T1: <em>P_tricornutum_PacBio_amplicon_sequencing_T1_SNPs.table</em> and <em>P_tricornutum_PacBio_amplicon_sequencing_T6_SNPs.table</em> Re-sequencing of 62 endogenous P. tricornutum loci selected in a genome-wide analysis of haplotype diversity. The goal was to determine the number of haplotypes per locus and the appearance of new haplotypes over time. The length of the sequenced loci was 2kb (+/- 5%). Loci were amplified by emulsion PCR on the same culture harvested in two time points: five loci were amplified one month (T1) and all loci were amplified 6 months (T6) after the start of the culture from a single cell. Plasmids containing cloned GFP or YFP were amplified separately as a control for random errors. Control reactions for artificial haplotypes detection consisted of mixed CFP with YFP or CFP with GFP. Amplicons were pooled together into two samples. Sample PacBio_AS_T1 contained five P. tricornutum endogenous amplicons from DNA harvested at T1 time point, GFP amplified separately and CFP+YFP amplified in one reaction. Sample PacBio_AS_T6 contained 63 P. tricornutum endogenous amplicons from DNA harvested at T6 time point, YFP amplified separately and CFP+GFP amplified in one reaction. Samples were mixed in 1:9 PacBio_AS_T1: PacBio_AS_T6 ratio before sequencing on one PacBio Sequel SMRT cell.
DOI: 10.6084/m9.figshare.7096544
title: Additional file 3: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S1. List of differentially expressed genes between autopod and zeugopod cells that were sorted positive from Hoxd11::GFP forelimbs. Tab-delimited file. The first column indicates the genes names; all other columns represent values of average expression, fold enrichment and p values for each gene. (TXT 26302 kb)
DOI: 10.6084/m9.figshare.7096544.v1
title: Additional file 3: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S1. List of differentially expressed genes between autopod and zeugopod cells that were sorted positive from Hoxd11::GFP forelimbs. Tab-delimited file. The first column indicates the genes names; all other columns represent values of average expression, fold enrichment and p values for each gene. (TXT 26302 kb)
DOI: 10.6084/m9.figshare.7096496
title: Additional file 13: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S5. Table listing the normalized values used from the 199 selected cells used for the analysis. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments. NA, no data available. (TXT 25545 kb)
DOI: 10.6084/m9.figshare.7096496.v1
title: Additional file 13: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S5. Table listing the normalized values used from the 199 selected cells used for the analysis. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments. NA, no data available. (TXT 25545 kb)
DOI: 10.6084/m9.figshare.7096490
title: Additional file 12: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S4. Table listing the values that were considering to select the cells with the highest qualities. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments; all other columns represent values of individual cells. NA, no data available. (TXT 7 kb)
DOI: 10.6084/m9.figshare.7096490.v1
title: Additional file 12: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S4. Table listing the values that were considering to select the cells with the highest qualities. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments; all other columns represent values of individual cells. NA, no data available. (TXT 7 kb)
DOI: 10.6084/m9.figshare.7096475
title: Additional file 10: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S3. Table of the raw counts of the 225 single cells sequenced in this study. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments; all other columns represent values of individual cells. NA, no data available. (TXT 11824 kb)
DOI: 10.6084/m9.figshare.7096475.v1
title: Additional file 10: of Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

description: Table S3. Table of the raw counts of the 225 single cells sequenced in this study. Tab-delimited file. The first three columns indicate the coordinates of the genomic segments; all other columns represent values of individual cells. NA, no data available. (TXT 11824 kb)
DOI: 10.6084/m9.figshare.7096454
title: Ataxin-1 interactome

description: Alphabetical listing of the ataxin-1[85Q] interactome in Neuro-2a cells identified by BioID and GFP-trap Pulldown approaches
DOI: 10.6084/m9.figshare.7096460
title: Questionnaire to students about ICT in the classroom

description: This is an instrument that is applied to students to determine if their teachers use ICT in the classroom.<br>Este es un instrumento que se aplica a los estudiantes para determinar si sus profesores usan las TIC en el aula.<br><br>
DOI: 10.6084/m9.figshare.7096454.v1
title: Ataxin-1 interactome

description: Alphabetical listing of the ataxin-1[85Q] interactome in Neuro-2a cells identified by BioID and GFP-trap Pulldown approaches
DOI: 10.6084/m9.figshare.7096448
title: List of proteins after background protein reduction

description: List of proteins after background protein reduction
DOI: 10.6084/m9.figshare.7096451
title: List of final proteins after biological replicates comparison

description: List of final proteins after biological replicates comparision
DOI: 10.6084/m9.figshare.7096451.v1
title: List of final proteins after biological replicates comparison

description: List of final proteins after biological replicates comparision
DOI: 10.6084/m9.figshare.7096445
title: List of original proteins identified by MASCOT search

description: List of original proteins identified by MASCOT search (all proteins have &gt; 1 significant peptide)
DOI: 10.6084/m9.figshare.7096445.v1
title: List of original proteins identified by MASCOT search

description: List of original proteins identified by MASCOT search (all proteins have &gt; 1 significant peptide)
DOI: 10.6084/m9.figshare.7096448.v1
title: List of proteins after background protein reduction

description: List of proteins after background protein reduction
DOI: 10.6084/m9.figshare.7096391
title: Case data the Letter

description: Two excels are for the IEEE 30-bus and IEEE 118-bus systems. They are used to demonstrate the proposed efficient method in fast probabilistic optimal power flow calculation. As for the actual 661-bus system, the data is not shared on the website due to its data privacy required by the power company. You can obtain this data after approved by the power company.
DOI: 10.6084/m9.figshare.7096391.v1
title: Case data the Letter

description: Three excels are for the IEEE 118-bus, IEEE 300-bus and Polish 2383-bus systems. They are used to demonstrate the proposed efficient method in fast probabilistic optimal power flow calculation.
DOI: 10.6084/m9.figshare.7096391.v2
title: Case data the Letter

description: Three excels are for the IEEE 118-bus, IEEE 300-bus and Polish 2383-bus systems. They are used to demonstrate the proposed efficient method in fast probabilistic optimal power flow calculation.
DOI: 10.6084/m9.figshare.7096391.v3
title: Case data the Letter

description: Two excels are for the IEEE 30-bus and IEEE 118-bus systems. They are used to demonstrate the proposed efficient method in fast probabilistic optimal power flow calculation. As for the actual 661-bus system, the data is not shared on the website due to its data privacy required by the power company. You can obtain this data after approved by the power company.
DOI: 10.6084/m9.figshare.7096358
title: ABC_Transport.jpg

description: Map for ABC conference
DOI: 10.17608/k6.auckland.7096319
title: East Burren Complex SAC Turloughs: Raw Data and Analyses

description: This dataset was used for for the 2017 thesis linked below, "Vegetation ecology and conservation of potential turlough systems in the East Burren Complex SAC, Co. Clare."<br>Files include raw quadrat data (unedited to final form), GPS data, cluster analysis files, and indicator species analysis files.
DOI: 10.17608/k6.auckland.7096319.v1
title: East Burren Complex SAC Turloughs: Raw Data and Analyses

description: This dataset was used for for the 2017 thesis linked below, "Vegetation ecology and conservation of potential turlough systems in the East Burren Complex SAC, Co. Clare."<br>Files include raw quadrat data (unedited to final form), GPS data, cluster analysis files, and indicator species analysis files.
DOI: 10.6084/m9.figshare.7096208
title: Quanfima Datasets

description: The dataset used in the paper "quanfima: An open source Python package for automated fiber analysis of biomaterials"<br>Polymer datasets: sample1_8bit_256x256x256, sample3_8bit_256x256x256<br>Generated datasets: dataset_noised_fibers_disordered_nl0.0_sl0.0, dataset_noised_fibers_medium_nl0.0_sl0.0, dataset_noised_fibers_aligned_nl0.0_sl0.0 (packed with Python's package pickle)<br>Cryogel scaffold datasets: cryogel_scaffold_8bit_639x639x539, cryogel_scaffold_diameter (packed with Python's package pickle)<br>Hydrogel datasets: hydrogel_hydroxyapatite_8bit_150x150x150, hydrogel_stannum_8bit_150x150x150<br><br><br><br>
DOI: 10.6084/m9.figshare.7096196
title: Info Theory and Ancient DNA Plant Microbiome

description: In this repository, we release, the results of the PTML model, the values of entropies, and the sequences studied to develop a new model for ancient DNA in plant microbiome.<br>
DOI: 10.6084/m9.figshare.7096196.v2
title: Info Theory and Ancient DNA Plant Microbiome

description: In this repository, we release, the results of the PTML model, the values of entropies, and the sequences studied to develop a new model for ancient DNA in plant microbiome.<br>
DOI: 10.6084/m9.figshare.7096196.v1
title: Info Theory and Ancient DNA Plant Picrobiome

description: Factors like the low number of reliable samples and the possibility of contamination difficult the experimental and alignment analysis of DNA from ancient samples (aDNA). Consequently, it is crucial to be able to differentiate modern and aDNA sequences. PTML method use Perturbation Theory (PT) and Machine Learning (ML) algorithms could perform this task using as input Shannon’s entropy measures (θ<sub>k</sub>) of Sequence-Recurrence Networks (SRNs) to quantify information about DNA sequences. In this work, we carried out the experimental extraction and characterization of a new set of putative 16S aDNA sequences belonging mostly to phyllosphere, rhizosphere, endosphere, and related organisms from Miocene fossil amber. BLAST alignment algorithm was used to build and analyze the phylogenetic tree. Next, we explored 100000 query and template pairs of sequences to seek an alignment-free PTML linear model with more that 80% of specificity and sensitivity in training and validation series. Next, we compared the alignment-free PTML method with alignment-based and non-linear Artificial Neural Networks classifiers. Last, we implemented the public web server named MEIONet (<b>M</b>iocene sequence <b>E</b>stimation with <b>I</b>nformation-perturbation <b>O</b>perators of Networks, http://bio-aims.udc.es/MEIONet.php) to make the tool available.
DOI: 10.6084/m9.figshare.7094627
title: Healthcare of the floating population in China

description: Dataset of healthcare of the floating population in China, 2014
DOI: 10.6084/m9.figshare.7094570
title: Database for Tring & Ringach "Subspace Invariance of Population Responses"

description: Database for Tring & Ringach "Subspace Invariance of Population Responses"
DOI: 10.6084/m9.figshare.7094366
title: sql.txt

description: just text file for test service<br>
DOI: 10.6084/m9.figshare.7094354
title: Antimicrobial efficacy of commercially available endodontic bioceramic root canal sealers.xlsx

description: This table give insight in antimicrobial efficacy of bioceramic root canal sealers.<br>
DOI: 10.6084/m9.figshare.7094363
title: Forest Edges Southern Ethiopia VI data

description: Vegetation index data for Arsi-Negele, Oromia. <br>
DOI: 10.6084/m9.figshare.7094363.v1
title: Forest Edges Southern Ethiopia VI data

description: Vegetation index data for Arsi-Negele, Oromia. <br>
DOI: 10.6084/m9.figshare.7094321
title: Data for Levine et al., Parameterized Model of X-ray Solar Flares.zipx

description: Ionosonde data used in the Radio Science paper "A Parameterized Model of X-ray Solar Flare Effects on the Lower Ionosphere and HF Propagation, E. V.Levine, P. J. Sultan, L. J. Teig.Ionograms from Sept 5, 6 and 7, 2017 during solar flare events.
DOI: 10.6084/m9.figshare.7094315
title: Where the plasmids roam: Large scale sequence analysis reveals plasmids with large host ranges

description: Metadata available from the NCBI Nucleotide, Bioproject, and Biosample databases for a compiled list of plasmids. Second file (PlasmidDBOutput.txt) including the BLAST outputs from comparing plasmids to one another. As published in <i>Microbial Genomics, '</i>Where the plasmids roam: Large scale sequence analysis reveals plasmids with large host ranges'.<i> </i>DOI: 10.1099/mgen.0.000244
DOI: 10.6084/m9.figshare.7094315.v1
title: Where the plasmids roam: Large scale sequence analysis reveals plasmids with large host ranges

description: Metadata available from the NCBI Nucleotide, Bioproject, and Biosample databases for a compiled list of plasmids. Second file (PlasmidDBOutput.txt) including the BLAST outputs from comparing plasmids to one another. As published in <i>Microbial Genomics, '</i>Where the plasmids roam: Large scale sequence analysis reveals plasmids with large host ranges'.<i> </i>DOI: 10.1099/mgen.0.000244
DOI: 10.6084/m9.figshare.7094045
title: The 0 m elevation contour from filtered GEBCO 2014 bathymetry/topography

description: The 0 m elevation contour from filtered GEBCO 2014 bathymetry/topography, intended for qmesh tutorials
DOI: 10.6084/m9.figshare.7094045.v1
title: The 0 m elevation contour from filtered GEBCO 2014 bathymetry/topography

description: The 0 m elevation contour from filtered GEBCO 2014 bathymetry/topography, intended for qmesh tutorials
DOI: 10.6084/m9.figshare.7094021
title: Filtered global GEBCO 2014 bathymetry/topography

description: Filtered global GEBCO 2014 bathymetry/topography raster, intended for qmesh tutorials.
DOI: 10.6084/m9.figshare.7094012
title: Meso–Neoarchaean crustal evolution of the Bundelkhand Craton, Indian Shield: new data from greenstone belts

description: The Mauranipur and Babina greenstone belts of the Bundelkhand Craton are formed of the Central Bundelkhand greenstone complex (CBGC). This complex represents tectonic collage which has not been previously studied in depth. The purpose of this study is to contribute to the understanding of the main features of the Archaean crustal evolution of the Bundelkhand Craton. The CBGC consists of two assemblages: (1) the early assemblage, which is composed of basic-ultramafic, rhyolitic–dacitic, and banded iron formation units, and (2) the late assemblage, which is a felsic volcanic unit. The units and assemblages are tectonically unified with epidote–quartz–plagioclase metasomatic rocks formed locally in these tectonic zones. The early assemblage of the Mauranipur greenstone belt is estimated at 2810 ± 13 Ma, from the U–Pb dating (SHRIMP, zircon) of the felsic volcanics. Also, there are inherited 3242 ± 65 Ma zircons in this rock. It is deduced that this assemblage is related to early felsic subduction volcanism during the Mesoarchaean that occurred in the Bundelkhand Craton. Zircons extracted from metasomatic rocks in the early assemblage’s high-Mg basalts show a concordant age of 2687 ± 11 Ma. This age is interpreted as a time of metamorphism that occurred simultaneously with an early accretion stage in the evolution of the Mauranipur greenstone belt. The felsic volcanism, appearing as subvolcanic bodies in the late assemblage of the Mauranipur greenstone belt, is estimated to be 2557 ± 33 Ma from the U–Pb dating (SHRIMP, zircon) of the felsic volcanic rocks. This rock also contains inherited 2864 ± 46 Ma zircons. The late assemblage of the Mauranipur greenstone belt corresponds with a geodynamic setting of active subduction along the continental margin during Neoarchaean. The late assemblage Neoarchaean felsic volcanic rocks from the Mauranipur and Babina greenstone belts are comparable in age and geochemical characteristics. The Neoarchaean rocks are more enriched in Sr and Ba and are more depleted in Cr and Ni than the Mesoarchaean felsic volcanic rocks of the early assemblage. Through isotopic dating and the geochemical analysis of the volcanic and metasomatic rocks of the CBGC, this study has revealed two subduction–accretion events, the Meso–Neoarchaean (2.81–2.7 Ga) and Neoarchaean (2.56–2.53 Ga), during the crustal evolution of the Bundelkhand Craton (Indian Shield).
DOI: 10.6084/m9.figshare.7094012.v1
title: Meso–Neoarchaean crustal evolution of the Bundelkhand Craton, Indian Shield: new data from greenstone belts

description: The Mauranipur and Babina greenstone belts of the Bundelkhand Craton are formed of the Central Bundelkhand greenstone complex (CBGC). This complex represents tectonic collage which has not been previously studied in depth. The purpose of this study is to contribute to the understanding of the main features of the Archaean crustal evolution of the Bundelkhand Craton. The CBGC consists of two assemblages: (1) the early assemblage, which is composed of basic-ultramafic, rhyolitic–dacitic, and banded iron formation units, and (2) the late assemblage, which is a felsic volcanic unit. The units and assemblages are tectonically unified with epidote–quartz–plagioclase metasomatic rocks formed locally in these tectonic zones. The early assemblage of the Mauranipur greenstone belt is estimated at 2810 ± 13 Ma, from the U–Pb dating (SHRIMP, zircon) of the felsic volcanics. Also, there are inherited 3242 ± 65 Ma zircons in this rock. It is deduced that this assemblage is related to early felsic subduction volcanism during the Mesoarchaean that occurred in the Bundelkhand Craton. Zircons extracted from metasomatic rocks in the early assemblage’s high-Mg basalts show a concordant age of 2687 ± 11 Ma. This age is interpreted as a time of metamorphism that occurred simultaneously with an early accretion stage in the evolution of the Mauranipur greenstone belt. The felsic volcanism, appearing as subvolcanic bodies in the late assemblage of the Mauranipur greenstone belt, is estimated to be 2557 ± 33 Ma from the U–Pb dating (SHRIMP, zircon) of the felsic volcanic rocks. This rock also contains inherited 2864 ± 46 Ma zircons. The late assemblage of the Mauranipur greenstone belt corresponds with a geodynamic setting of active subduction along the continental margin during Neoarchaean. The late assemblage Neoarchaean felsic volcanic rocks from the Mauranipur and Babina greenstone belts are comparable in age and geochemical characteristics. The Neoarchaean rocks are more enriched in Sr and Ba and are more depleted in Cr and Ni than the Mesoarchaean felsic volcanic rocks of the early assemblage. Through isotopic dating and the geochemical analysis of the volcanic and metasomatic rocks of the CBGC, this study has revealed two subduction–accretion events, the Meso–Neoarchaean (2.81–2.7 Ga) and Neoarchaean (2.56–2.53 Ga), during the crustal evolution of the Bundelkhand Craton (Indian Shield).
DOI: 10.6084/m9.figshare.7094021.v1
title: Untitled Filtered global GEBCO 2014 bathymetry/topographyItem

description: Filtered global GEBCO 2014 bathymetry/topography raster, intended for qmesh tutorials.
DOI: 10.6084/m9.figshare.7094021.v3
title: Filtered global GEBCO 2014 bathymetry/topography

description: Filtered global GEBCO 2014 bathymetry/topography raster, intended for qmesh tutorials.
DOI: 10.6084/m9.figshare.7093967
title: data

description: 计算机生物信息学研究
DOI: 10.6084/m9.figshare.7094021.v2
title: Untitled Filtered global GEBCO 2014 bathymetry/topography

description: Filtered global GEBCO 2014 bathymetry/topography raster, intended for qmesh tutorials.
DOI: 10.6084/m9.figshare.7093934
title: Trust and Mistrust in the Economies of the China-Russia Borderlands

description: The first English-language book to focus on northeast Sino-Russian border economies, <i>Trust and Mistrust in the Economies of the China-Russia Borderlands</i> examines how trans-border economies function in practice. The authors offer an anthropological understanding of trust in juxtaposition to the economy and the state. They argue that the history of suspicion and the securitised character of the Sino-Russian border mean that trust is at a premium. The chapters show how diverse kinds of cross-border business manage to operate, often across great distances, despite widespread mistrust.
DOI: 10.6084/m9.figshare.7093967.v1
title: data

description: 计算机生物信息学研究
DOI: 10.6084/m9.figshare.7093934.v1
title: Trust and Mistrust in the Economies of the China-Russia Borderlands

description: The first English-language book to focus on northeast Sino-Russian border economies, <i>Trust and Mistrust in the Economies of the China-Russia Borderlands</i> examines how trans-border economies function in practice. The authors offer an anthropological understanding of trust in juxtaposition to the economy and the state. They argue that the history of suspicion and the securitised character of the Sino-Russian border mean that trust is at a premium. The chapters show how diverse kinds of cross-border business manage to operate, often across great distances, despite widespread mistrust.
DOI: 10.6084/m9.figshare.7093865
title: Ethnicity and Democracy in the Eastern Himalayan Borderland. Constructing Democracy

description: This book presents a close look at the growth, success, and proliferation of ethnic politics on the peripheries of modern South Asia, built around a case study of the Nepal ethnic group that lives in the borderlands of Sikkim, Darjeeling, and east Nepal. Grounded in historical and ethnographic research, it critically examines the relationship between culture and politics in a geographical space that is home to a diverse range of ethnic identities, showing how new modes of political representation, cultural activism, and everyday politics have emerged from the region.
DOI: 10.6084/m9.figshare.7093865.v1
title: Ethnicity and Democracy in the Eastern Himalayan Borderland. Constructing Democracy

description: This book presents a close look at the growth, success, and proliferation of ethnic politics on the peripheries of modern South Asia, built around a case study of the Nepal ethnic group that lives in the borderlands of Sikkim, Darjeeling, and east Nepal. Grounded in historical and ethnographic research, it critically examines the relationship between culture and politics in a geographical space that is home to a diverse range of ethnic identities, showing how new modes of political representation, cultural activism, and everyday politics have emerged from the region.