cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7867169
title: Additional file 2: of Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa

description: a Figure depicts the multiple sequence alignment of Cu-ZnSODs from B. juncea, anti-parallel β-strands are shown by over head red arrows, Cu binding residues are shown in yellow asterisk, Zn residues in blue asterisk, Bridging histidine is represented by two asterisk. Also various important structural elements are shown like V-loop (Variable loop with over head yellow line), Electrostatic loop (Green) and Greek key loops 1 and 2 (GK1 and GK2 in purple). The Cu2+ and Zn2+ motif signature sequence is highlighted in black box. b Figure shows the multiple sequence alignment of MnSODs from B. juncea, wherein their metal binding sites is highlighted in black box and the metal binding residues are marked with purple asterisks. Also the α-helices and β-sheets are shown by over head black arrows. c Figure shows the multiple sequence alignment of FeSODs from B. juncea, wherein their metal binding sites is highlighted in black box and the metal binding residues are marked with yellow asterisks. Also the α-helices and β-sheets are shown by over head black arrows. (ZIP 2875 kb)
DOI: 10.6084/m9.figshare.7867169.v1
title: Additional file 2: of Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa

description: a Figure depicts the multiple sequence alignment of Cu-ZnSODs from B. juncea, anti-parallel β-strands are shown by over head red arrows, Cu binding residues are shown in yellow asterisk, Zn residues in blue asterisk, Bridging histidine is represented by two asterisk. Also various important structural elements are shown like V-loop (Variable loop with over head yellow line), Electrostatic loop (Green) and Greek key loops 1 and 2 (GK1 and GK2 in purple). The Cu2+ and Zn2+ motif signature sequence is highlighted in black box. b Figure shows the multiple sequence alignment of MnSODs from B. juncea, wherein their metal binding sites is highlighted in black box and the metal binding residues are marked with purple asterisks. Also the α-helices and β-sheets are shown by over head black arrows. c Figure shows the multiple sequence alignment of FeSODs from B. juncea, wherein their metal binding sites is highlighted in black box and the metal binding residues are marked with yellow asterisks. Also the α-helices and β-sheets are shown by over head black arrows. (ZIP 2875 kb)
DOI: 10.6084/m9.figshare.7867001
title: Additional file 4: of Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population

description: Table S7. Haplotype pattern analysis of candidate genes for BPH resistance in mutant lines. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7867001.v1
title: Additional file 4: of Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population

description: Table S7. Haplotype pattern analysis of candidate genes for BPH resistance in mutant lines. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7866692
title: Bichromophoric naphthalene derivatives of diethylenetriaminepentaacetate (DTPA): fluorescent response to H<sup>+</sup>, Ca<sup>2+</sup>, Zn<sup>2+</sup>, and Cd<sup>2+</sup>

description: As an effort to design selective fluorescent sensors toward Ca<sup>2+</sup>, Zn<sup>2+</sup> and Cd<sup>2+</sup>, synthetic and fluorometric studies were performed on four bichromophores, each of which consists of two naphthyl or methynaphthyl units (1- and 2-isomers) linked with a diethylenetriaminepentaacetate (DTPA) chain. Every bichromophore exhibits naphthalene-monomer emission at 370 nm and excimer emission at 405 nm. Emission intensities show sensitive pH dependence, from which protonation constants were determined. Fluorometric titrations with the metal ions were performed at the physiological pH and the conditional formation constants were determined. Naphthyl rings define the stoichiometry and stability of the complexes. The insertion of CH<sub>2</sub> spacer intensifies the emission and enhances the selective response to metal ions: the excimer emission is strengthened by 70−100 % with Cd<sup>2+</sup> coordination, weakened by 60 % with Zn<sup>2+</sup>, and insensitive to Ca<sup>2+</sup>. The high response of methylnaphthyl bichromophores to Cd<sup>2+</sup> is advantageous in fluorometric analyses.
DOI: 10.6084/m9.figshare.7866869
title: Genetic diversity of Iranian and some European grapes as revealed by nuclear and chloroplast microsatellite and SNP molecular markers

description: Genetic and chloroplast haplotype variations of 35 Iranian genotypes and 10 European grape cultivars were investigated using 9 nuclear simple sequence repeats (nSSRs), 4 chloroplast simple sequence repeats (cpSSRs) and 46 single nucleotide polymorphism (SNP) markers. In total, 83 alleles were detected at nine nSSRs, giving a mean of 15.66 alleles per locus and polymorphism information content (PIC) values ≥0.75 ranged from 0.75 to 0.90. For SNP markers, PIC values varied from 0.30 to 0.39 with an average of 0.34. Analysis of molecular variance revealed 97 and 93% of partitioned genetic diversity within populations using nSSRs and SNPs markers, respectively. Un-weighted neighbour-joining (NJ) cluster analysis grouped grapes into 10 and 9 major clusters using SSR and SNP markers, respectively. Synonyms and homonyms were identified among the Iranian genotypes. Close genetic relationship among Farkhi and Bidane-Sefid genotypes may probably propose a common ancestor and mutational evolution. Most European cultivars were differentiated from Iranian genotypes, however, clustering of some Iranian genotypes with European cultivars in the same clusters suggests that clonally propagated materials have probably been exchanged from the Middle East to West or <i>vice versa</i>. C and D chloroplast haplotypes were the most frequent within the Iranian genotypes, while A chloroplast haplotype was exclusively observed among European cultivars.
DOI: 10.6084/m9.figshare.7866692.v1
title: Bichromophoric naphthalene derivatives of diethylenetriaminepentaacetate (DTPA): fluorescent response to H<sup>+</sup>, Ca<sup>2+</sup>, Zn<sup>2+</sup>, and Cd<sup>2+</sup>

description: As an effort to design selective fluorescent sensors toward Ca<sup>2+</sup>, Zn<sup>2+</sup> and Cd<sup>2+</sup>, synthetic and fluorometric studies were performed on four bichromophores, each of which consists of two naphthyl or methynaphthyl units (1- and 2-isomers) linked with a diethylenetriaminepentaacetate (DTPA) chain. Every bichromophore exhibits naphthalene-monomer emission at 370 nm and excimer emission at 405 nm. Emission intensities show sensitive pH dependence, from which protonation constants were determined. Fluorometric titrations with the metal ions were performed at the physiological pH and the conditional formation constants were determined. Naphthyl rings define the stoichiometry and stability of the complexes. The insertion of CH<sub>2</sub> spacer intensifies the emission and enhances the selective response to metal ions: the excimer emission is strengthened by 70−100 % with Cd<sup>2+</sup> coordination, weakened by 60 % with Zn<sup>2+</sup>, and insensitive to Ca<sup>2+</sup>. The high response of methylnaphthyl bichromophores to Cd<sup>2+</sup> is advantageous in fluorometric analyses.
DOI: 10.6084/m9.figshare.7866869.v1
title: Genetic diversity of Iranian and some European grapes as revealed by nuclear and chloroplast microsatellite and SNP molecular markers

description: Genetic and chloroplast haplotype variations of 35 Iranian genotypes and 10 European grape cultivars were investigated using 9 nuclear simple sequence repeats (nSSRs), 4 chloroplast simple sequence repeats (cpSSRs) and 46 single nucleotide polymorphism (SNP) markers. In total, 83 alleles were detected at nine nSSRs, giving a mean of 15.66 alleles per locus and polymorphism information content (PIC) values ≥0.75 ranged from 0.75 to 0.90. For SNP markers, PIC values varied from 0.30 to 0.39 with an average of 0.34. Analysis of molecular variance revealed 97 and 93% of partitioned genetic diversity within populations using nSSRs and SNPs markers, respectively. Un-weighted neighbour-joining (NJ) cluster analysis grouped grapes into 10 and 9 major clusters using SSR and SNP markers, respectively. Synonyms and homonyms were identified among the Iranian genotypes. Close genetic relationship among Farkhi and Bidane-Sefid genotypes may probably propose a common ancestor and mutational evolution. Most European cultivars were differentiated from Iranian genotypes, however, clustering of some Iranian genotypes with European cultivars in the same clusters suggests that clonally propagated materials have probably been exchanged from the Middle East to West or <i>vice versa</i>. C and D chloroplast haplotypes were the most frequent within the Iranian genotypes, while A chloroplast haplotype was exclusively observed among European cultivars.
DOI: 10.6084/m9.figshare.7866380
title: Data for Siracusa et al. 2019 Animal Behaviour - "Red squirrels mitigate costs of territory defence through social plasticity"

description: Data to recreate analyses found in Siracusa et al. 2019 Animal Behaviour - "North American red squirrels mitigate costs of territory defence through social plasticity".
DOI: 10.6084/m9.figshare.7866380.v1
title: Data for Siracusa et al. 2019 Animal Behaviour - "Red squirrels mitigate costs of territory defence through social plasticity"

description: Data to recreate analyses found in Siracusa et al. 2019 Animal Behaviour - "North American red squirrels mitigate costs of territory defence through social plasticity".
DOI: 10.6084/m9.figshare.7866572.v1
title: Demise of mcr-1 and mcr-3.19 mediated by plasmid elimination and ISApl1

description: The sequences in the three files were assembled sequenes of plasmids found in three danghter clones with flye tool based on Nanopore MinION long-read data.
DOI: 10.6084/m9.figshare.7866167
title: Data-PONE-D-18-32374

description: Data-PONE-D-18-32374
DOI: 10.6084/m9.figshare.7866170
title: Raw reads of Impatiens balsamina transcriptome

description: Raw reads of transcriptome sequencing of <i>Impatiens balsamina</i>
DOI: 10.6084/m9.figshare.7866407.v2
title: The annotation, molecular markers, and transcription factor of Platanus acerifolia transcriptome

description: Annotation, molecular markers, and transcription factor output files of Platanus acerifolia transcriptome<br>
DOI: 10.6084/m9.figshare.7866170.v1
title: Raw reads of Impatiens balsamina transcriptome

description: Raw reads of transcriptome sequencing of <i>Impatiens balsamina</i>
DOI: 10.6084/m9.figshare.7866407.v1
title: annotation, molecular markers, and transcription factor

description: The annotation, molecular markers, and transcription factor output files of Platanus acerifolia transcriptome<br>
DOI: 10.6084/m9.figshare.7866167.v1
title: Data-PONE-D-18-32374

description: Data-PONE-D-18-32374
DOI: 10.6084/m9.figshare.7866140
title: New Composites CP@AC Based on Lanthanide Succinates

description: Composites derived from coordination polymers have been gathering great attention due to their singular properties and applications, especially catalysis and adsorption. In this work, seven new composites based on activated carbon (AC) and lanthanide-succinates (LnSuc; Ln = Pr, Nd, Sm, Gd, Dy, Er and Tm, and Suc = succinate) 3D-coordination polymers were obtained using hydrothermal reactions. Coordination polymers in LnSuc@AC composites (Ln = Pr, Nd, Sm, Gd) crystallize in monoclinic system and C2/c space group. However, the LnSuc in composites with Dy, Er and Tm have different crystal structures, due to the influence of the carbon matrix in the reaction. The systems were also characterized by Fourier transform infrared (FTIR) and thermogravimetric (TGA) analysis, and the results are in agreement with the X-ray powder diffraction (XRPD) data. The scanning electron microscopy (SEM) images confirm the crystallization of the compounds inside the pores of the carbon material. Photophysical properties of the NdSuc@AC and DySuc@AC were also investigated.
DOI: 10.6084/m9.figshare.7866140.v1
title: New Composites CP@AC Based on Lanthanide Succinates

description: Composites derived from coordination polymers have been gathering great attention due to their singular properties and applications, especially catalysis and adsorption. In this work, seven new composites based on activated carbon (AC) and lanthanide-succinates (LnSuc; Ln = Pr, Nd, Sm, Gd, Dy, Er and Tm, and Suc = succinate) 3D-coordination polymers were obtained using hydrothermal reactions. Coordination polymers in LnSuc@AC composites (Ln = Pr, Nd, Sm, Gd) crystallize in monoclinic system and C2/c space group. However, the LnSuc in composites with Dy, Er and Tm have different crystal structures, due to the influence of the carbon matrix in the reaction. The systems were also characterized by Fourier transform infrared (FTIR) and thermogravimetric (TGA) analysis, and the results are in agreement with the X-ray powder diffraction (XRPD) data. The scanning electron microscopy (SEM) images confirm the crystallization of the compounds inside the pores of the carbon material. Photophysical properties of the NdSuc@AC and DySuc@AC were also investigated.
DOI: 10.6084/m9.figshare.7866122
title: The influence of contingencies factors strategy and structure in the enterprise risk management in a hospital

description: Abstract Founded on the premise that Enterprise Risk Management (ERM) as a Management Control System (MCS) and according to contingency theory, the design and the use of MCS tends to vary according to the organizational context. The aim of this paper is to describe how the contingency factor strategy and structure are interrelated with the control and presence and processes of ERM in a health organization. The methodology has a qualitative approach and, as a research procedure, the study of the case. Two theoretical propositions are presented to data analysis. Data were collected through interviews, observations, and documents. The theoretical propositions are: i) the kind of strategy adopted by the organization, typified according to Miles and Snow´s adaptive cycles interfering in the processes and in the controls of ERM; ii) the organization structure interfere in the processes and in the controls of ERM. The investigated hospital is a philanthropic entity distinguished as the general hospital of high complexity that is related to the Brazilian Sistema Único de Saúde (Unified Helth System). The main conclusions found in the study were: health area managers have bigger expertise regarding the use of controls and processes of ERM when compared to the administrative area managers; the strategy is the contingency factor that guides the way the organization is positioned against the risk management. The risk management supported in health certification systems revealed useful to minimize problem inherent to professional bureaucracy. In this case, the risk management helped to control inner characteristics related to the hospital professional structure, as well as, the organizational structure, defined by the formalization degree of tasks, contributing to the risk management.
DOI: 10.6084/m9.figshare.7866131
title: A comparative study of the thermal ranges of three germination criteria of a tropical tree with bioeconomic interest: Carapa surinamensis Miq. (Meliaceae)

description: Abstract Species of the Carapa spp. complex, occurring in the Neotropics, Africa and India, have multiple uses, including timber, with the seed oil being used in phyto-pharmaceutical products and cosmetics. This study aimed to determine the thermal ranges of the germination process, comparing germination criteria used by seed physiologists and seed technologists, and to suggest recommendations for seed quality assessment. Germination was assessed at constant temperatures between 10 ─ 40 °C using three germination criteria: (1) radicle length ≥ 0.5 cm (physiological criterion); (2) epicotyl length ≥ 1 cm; and (3) epicotyl length ≥ 5 cm (criterion for seed quality tests). The base temperature was similar for the three criteria and ranged between 10 ─ 2 °C. The Maguire’s Speed Index indicated 30 °C as most adequate. However, the upper temperature limit differed: for radicle protrusion it was above 40 ºC; and for both epicotyl lengths, it was between 35 ─ 40 °C. Seed coat removal accelerated the germination process of these recalcitrant seeds, and is recommended for seed quality assessment, which allows completion of the germination trial in approximately one month.
DOI: 10.6084/m9.figshare.7866122.v1
title: The influence of contingencies factors strategy and structure in the enterprise risk management in a hospital

description: Abstract Founded on the premise that Enterprise Risk Management (ERM) as a Management Control System (MCS) and according to contingency theory, the design and the use of MCS tends to vary according to the organizational context. The aim of this paper is to describe how the contingency factor strategy and structure are interrelated with the control and presence and processes of ERM in a health organization. The methodology has a qualitative approach and, as a research procedure, the study of the case. Two theoretical propositions are presented to data analysis. Data were collected through interviews, observations, and documents. The theoretical propositions are: i) the kind of strategy adopted by the organization, typified according to Miles and Snow´s adaptive cycles interfering in the processes and in the controls of ERM; ii) the organization structure interfere in the processes and in the controls of ERM. The investigated hospital is a philanthropic entity distinguished as the general hospital of high complexity that is related to the Brazilian Sistema Único de Saúde (Unified Helth System). The main conclusions found in the study were: health area managers have bigger expertise regarding the use of controls and processes of ERM when compared to the administrative area managers; the strategy is the contingency factor that guides the way the organization is positioned against the risk management. The risk management supported in health certification systems revealed useful to minimize problem inherent to professional bureaucracy. In this case, the risk management helped to control inner characteristics related to the hospital professional structure, as well as, the organizational structure, defined by the formalization degree of tasks, contributing to the risk management.
DOI: 10.6084/m9.figshare.7866125
title: Factors associated to the frailty phenotype components among hospitalized elderly patients

description: Abstract The aim of this study was to verify the factors associated with the frailty phenotype components among hospitalized elderly patients. This is a crosssectional and analytical study with 255 elderly patients admitted to the Medical and Surgical Clinic units at a General Hospital of Uberaba-MG. The following instruments were used: Frailty phenotype according to Fried, Scales (Short Geriatric Depression, Katz and Lawton and Brody) and structured questionnaire with socioeconomic and health data. Descriptive, bivariate and logistic regression analyses were performed (p &lt;0.05). The frailty phenotype components with the highest percentages were slow gait speed (40.0%) and self-report of exhaustion and/or fatigue (38.8%). The following associated factors were identified: self-report of exhaustion and/or fatigue [depression indicative (OR: 3.12; CI: 1.69-5.75)]; decreased muscle strength [advanced age (OR:2.20; CI: 1.40-3.47); absence of partner (OR: 1.86, CI: 1.023.39); inability to perform basic (OR: 2.38; CI: 1.27-4.44) and instrumental (OR: 2.53; CI: 1.29-4.97) activities of the daily living]; slow gait speed [women (OR:2.13; CI:1.16-3.92), advanced age (OR:2.90; CI:1.82-4.61), inability to perform instrumental activities of the daily living (OR:2.08; CI:1.14-3.77); and low level of physical activity [advanced age (OR: 1.57; CI: 1.01-2.44)]. The frailty phenotype components were associated with socioeconomic and health variables. The identification of the factors associated to the frailty phenotype components demonstrates the relevance for the development of preventive strategies in order to postpone this condition as well as follow-up actions at this level of service.
DOI: 10.6084/m9.figshare.7866125.v1
title: Factors associated to the frailty phenotype components among hospitalized elderly patients

description: Abstract The aim of this study was to verify the factors associated with the frailty phenotype components among hospitalized elderly patients. This is a crosssectional and analytical study with 255 elderly patients admitted to the Medical and Surgical Clinic units at a General Hospital of Uberaba-MG. The following instruments were used: Frailty phenotype according to Fried, Scales (Short Geriatric Depression, Katz and Lawton and Brody) and structured questionnaire with socioeconomic and health data. Descriptive, bivariate and logistic regression analyses were performed (p &lt;0.05). The frailty phenotype components with the highest percentages were slow gait speed (40.0%) and self-report of exhaustion and/or fatigue (38.8%). The following associated factors were identified: self-report of exhaustion and/or fatigue [depression indicative (OR: 3.12; CI: 1.69-5.75)]; decreased muscle strength [advanced age (OR:2.20; CI: 1.40-3.47); absence of partner (OR: 1.86, CI: 1.023.39); inability to perform basic (OR: 2.38; CI: 1.27-4.44) and instrumental (OR: 2.53; CI: 1.29-4.97) activities of the daily living]; slow gait speed [women (OR:2.13; CI:1.16-3.92), advanced age (OR:2.90; CI:1.82-4.61), inability to perform instrumental activities of the daily living (OR:2.08; CI:1.14-3.77); and low level of physical activity [advanced age (OR: 1.57; CI: 1.01-2.44)]. The frailty phenotype components were associated with socioeconomic and health variables. The identification of the factors associated to the frailty phenotype components demonstrates the relevance for the development of preventive strategies in order to postpone this condition as well as follow-up actions at this level of service.
DOI: 10.6084/m9.figshare.7866107
title: Zika Virus Activity of the Leaf and Branch Extracts of Tontelea micrantha and Its Hexane Extracts Phytochemical Study

description: The new triterpene friedelan-1,3,21-trione, the known compounds friedelan-3-one, 3β-friedelinol, 3,4-seco-friedelan-3-oic acid, 28-hydroxyfriedelan-3-one, friedelan-3-oxo-28-al, friedelan-3,21-dione, 30-hydroxyfriedelan-3-one, a mixture of 30-hydroxyfriedelan-3-one/21α-hydroxyfriedelan-3-one, 21β-hydroxyfriedelan-3-one, gutta-percha, squalene, and a mixture of palmitic/stearic/oleic acids were isolated from the hexane extracts of leaves and branches of T. micrantha. Their chemical structures were established by Fourier transform infrared spectroscopy (FTIR), gas chromatography (GC), 1D/2D nuclear magnetic resonance (NMR) and comparison with the literature data. All compounds were described for T. micrantha and the genus Tontelea for the first time. The branch and leaf extracts displayed anti-Zika virus activity at the lowest tested concentration of 15.6 µg mL-1, mainly virucidal effect, and presented no cytotoxicity to Vero cells. Furthermore, the ethyl acetate and methanolic leaf extracts demonstrated the best activities at the concentration of 31.2 and 15.6 µg mL-1 at the viral adsorption and penetration stages, respectively. These results showed that these extracts may be promising candidates for the Zika virus treatment.