cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6203456.v1
title: Dataset for: Robust versus consistent variance estimators in marginal structural Cox models

description: In survival analyses, inverse-probability-of-treatment (IPT) and inverse-probability-of-censoring (IPC) weighted estimators of parameters in marginal structural Cox models (Cox MSMs) are often used to estimate treatment effects in the presence of time-dependent confounding and censoring. In most applications, a robust variance estimator of the IPT and IPC weighted estimator is calculated leading to conservative confidence intervals. This estimator assumes that the weights are known rather than estimated from the data. Although a consistent estimator of the asymptotic variance of the IPT and IPC weighted estimator is generally available, applications and thus information on the performance of the consistent estimator are lacking. Reasons might be a cumbersome implementation in statistical software, which is further complicated by missing details on the variance formula. In this paper, we therefore provide a detailed derivation of the variance of the asymptotic distribution of the IPT and IPC weighted estimator and explicitly state the necessary terms to calculate a consistent estimator of this variance. We compare the performance of the robust and the consistent variance estimator in an application based on routine health care data and in a simulation study. The simulation reveals no substantial differences between the two estimators in medium and large data sets with no unmeasured confounding, but the consistent variance estimator performs poorly in small samples or under unmeasured confounding, if the number of confounders is large. We thus conclude that the robust estimator is more appropriate for all practical purposes.
DOI: 10.6084/m9.figshare.6203453
title: Mindfulness-EF.sav

description: Data used on the following manuscript: Relating mindfulness and executive function in children
DOI: 10.6084/m9.figshare.6203453.v1
title: Mindfulness-EF.sav

description: Data used on the following manuscript: Relating mindfulness and executive function in children
DOI: 10.6084/m9.figshare.6203396
title: Noonan et al early successional coral reef communities and their metabolism under ocean acidification

description: Succession changes and metabolic rates from settlement tiles deployed along gradients of CO2 exposure at seep sites in PNG. The data is being used to predict the development of benthic coral reef communities under increasing ocean acidification. In December 2011, we deployed settlement tiles along gradients of CO2 exposure at seep and control reefs in Milne Bay, PNG, and monitored the developing communities on them. Successional changes were captured at two time points over 13 months, and whole-tile community meatbolism (photosynthesis, respiration, and light and dark calcification) was also measured after 13 months.
DOI: 10.6084/m9.figshare.12894041
title: R0191_20171002a_videos

description: Rat 0191, skilled reaching data collected on 10/2/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12894041.v1
title: R0191_20171002a_videos

description: Rat 0191, skilled reaching data collected on 10/2/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.4225/03/5ae78ffdb9c74
title: Ghedini, Loreau, White & Marshall (2018) Testing MacArthur’s minimisation principle: do communities minimise energy wastage during succession? Ecology Letters

description: A test of MacArthur's minimisation principle. The file contains data on the species composition, mortality, oxygen and food consumption of communities of marine sessile invertebrates at different successional stages.
DOI: 10.6084/m9.figshare.6203186
title: midpoint_ude.m

description: This MATLAB function file solves uncertain differential equations using the midpoint method
DOI: 10.6084/m9.figshare.6203186.v1
title: midpoint_ude.m

description: This MATLAB function file solves uncertain differential equations using the midpoint method
DOI: 10.6084/m9.figshare.6203066
title: Supplementary File 1 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Summary of all differentially expressed contigs and list of differentially expressed contigs identified as part of the immune response.
DOI: 10.6084/m9.figshare.6203066.v1
title: Supplementary File 1 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Summary of all differentially expressed contigs and list of differentially expressed contigs identified as part of the immune response.
DOI: 10.6084/m9.figshare.6203060
title: Supplementary File 2 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Results of the WGCNA coexpression analysis listing each contig's annotation, module classification, and module membership.
DOI: 10.6084/m9.figshare.6203060.v1
title: Supplementary File 2 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Results of the WGCNA coexpression analysis listing each contig's annotation, module classification, and module membership.
DOI: 10.6084/m9.figshare.6203054
title: Data matrix in nexus format from A new Miocene pinniped <i>Allodesmus</i> (Mammalia: Carnivora) from Hokkaido, northern Japan

description: A nearly complete pinniped skeleton from the middle Miocene Okoppezawa Formation (<i>ca</i>. 16.3–13.9 Ma), Hokkaido, northern Japan, is described as the holotype of <i>Allodesmus uraiporensis</i> sp. nov. The new species is distinguishable from other species of the genus by having the palatine fissure (incisive foramen) that is located anterior to the canine, an anteriorly located supraorbital process of the frontal, and by having the calcaneum with a developed peroneal tubercle. Our phylogenetic analysis suggests that the subfamily Allodesminae are represented by two genera, <i>Atopotarus</i> and <i>Allodesmus</i>, and the latter genus is represented by at least six species; <i>Al</i>. <i>kernensis</i>, <i>Al</i>. <i>sinanoensis</i>, <i>Al</i>. <i>naorai</i>, <i>Al</i>. <i>packardi, Al. demerei</i> and <i>Al. uraiporensis</i> sp. nov. <i>Allodesmus uraiporensis</i> sp. nov. is one of the oldest and the northernmost record of the genus in the Western North Pacific, and it suggests that the diversification of the genus in the Western North Pacific was synchronous to the time of their diversification in the eastern North Pacific.
DOI: 10.6084/m9.figshare.6203054.v1
title: Data matrix in nexus format from A new Miocene pinniped <i>Allodesmus</i> (Mammalia: Carnivora) from Hokkaido, northern Japan

description: A nearly complete pinniped skeleton from the middle Miocene Okoppezawa Formation (<i>ca</i>. 16.3–13.9 Ma), Hokkaido, northern Japan, is described as the holotype of <i>Allodesmus uraiporensis</i> sp. nov. The new species is distinguishable from other species of the genus by having the palatine fissure (incisive foramen) that is located anterior to the canine, an anteriorly located supraorbital process of the frontal, and by having the calcaneum with a developed peroneal tubercle. Our phylogenetic analysis suggests that the subfamily Allodesminae are represented by two genera, <i>Atopotarus</i> and <i>Allodesmus</i>, and the latter genus is represented by at least six species; <i>Al</i>. <i>kernensis</i>, <i>Al</i>. <i>sinanoensis</i>, <i>Al</i>. <i>naorai</i>, <i>Al</i>. <i>packardi, Al. demerei</i> and <i>Al. uraiporensis</i> sp. nov. <i>Allodesmus uraiporensis</i> sp. nov. is one of the oldest and the northernmost record of the genus in the Western North Pacific, and it suggests that the diversification of the genus in the Western North Pacific was synchronous to the time of their diversification in the eastern North Pacific.
DOI: 10.6084/m9.figshare.6203051
title: Supplementary File 3 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Summary of gene ontology enrichment analysis results for the two modules that were correlated to disease statues (4 and 19).
DOI: 10.6084/m9.figshare.6203051.v1
title: Supplementary File 3 from Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral

description: Summary of gene ontology enrichment analysis results for the two modules that were correlated to disease statues (4 and 19).
DOI: 10.6084/m9.figshare.6203042
title: Explanatory notes for data for Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This readme file provides information about the contents of the three data files.
DOI: 10.6084/m9.figshare.6203042.v1
title: Explanatory notes for data for Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This readme file provides information about the contents of the three data files.
DOI: 10.6084/m9.figshare.6203039
title: Data for Study 3 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 3 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.6084/m9.figshare.6203039.v1
title: Data for Study 3 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 3 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.6084/m9.figshare.6203036
title: Data for Study 1 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 1 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.6084/m9.figshare.6203036.v1
title: Data for Study 1 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 1 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.6084/m9.figshare.6203033
title: Data for Study 2 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 2 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.5517/ccdc.csd.cc219ws1
title: CCDC 1886343: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.5517/ccdc.csd.cc219wt2
title: CCDC 1886344: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.6084/m9.figshare.6203033.v1
title: Data for Study 2 of Versluys, Foley, and Skylark from The influence of leg-to-body ratio, arm-to-body ratio and intra-limb ratio on male human attractiveness

description: This csv file holds the data for Study 2 of Versluys, Foley, & Skylark "The influence of leg-to-body ratio, arm-to-body ratio, and intra-limb ratio on male human attractiveness"
DOI: 10.5517/ccdc.csd.cc219wv3
title: CCDC 1886345: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.6084/m9.figshare.6203012
title: kallisto quantifications of Frahm et al., 2017

description: The analysis was performed in Yi et al., 2017, which used p-value aggregation on transcript differential analysis to make gene-level determinations. For more details, see https://doi.org/10.1186/s13059-018-1419-z<br><br>We analyzed a dataset (GEO Series GSE95363) consisting of reads derived from RNA-seq on primary mouse neural progenitor cells extracted from two regions of the brain, from female and male embryonic mice, and with and without dexamethasone treatment. Three replicates were performed for each of the eight combinatorial conditions, resulting in a total of 24 single-end RNA-seq samples. Samples were quantified with kallisto v0.43.1 (default kmer length 31, with 30 bootstraps per sample), using an index constructed from Ensembl <em>Mus musculus</em> GRCm38 cDNA release 88. <br>RNA-Seq performed by:Frahm KA, Waldman JK, Luthra S, Rudine AC, Monaghan-Nichols AP, Chandran UR. A comparison of the sexually dimorphic dexamethasone transcriptome in mouse cerebral cortical and hypothalamic embryonic neural stem cells. Mol Cell Endocrinol. 2017; https://doi.org/10.1016/j.mce.2017.05.026.
DOI: 10.5517/ccdc.csd.cc219wx5
title: CCDC 1886347: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.5517/ccdc.csd.cc219wy6
title: CCDC 1886348: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.5517/ccdc.csd.cc219wz7
title: CCDC 1886349: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.5517/ccdc.csd.cc219x1b
title: CCDC 1886351: Experimental Crystal Structure Determination

description: Related Article: Qingrui Fan, Linhai Li, Han Xue, Heng Zhou, Lishan Zhao, Jie Liu, Junqiang Mao, Shuwang Wu, Shizhong Zhang, Chenyang Wu, Xueming Li, Xin Zhou, Jianjun Wang|2020|Angew.Chem.,Int.Ed.|59|15141|doi:10.1002/anie.202003922
DOI: 10.6084/m9.figshare.6203012.v1
title: kallisto quantifications of Frahm et al., 2017

description: The analysis was performed in Yi et al., 2017, which used p-value aggregation on transcript differential analysis to make gene-level determinations. For more details, see https://doi.org/10.1186/s13059-018-1419-z<br><br>We analyzed a dataset (GEO Series GSE95363) consisting of reads derived from RNA-seq on primary mouse neural progenitor cells extracted from two regions of the brain, from female and male embryonic mice, and with and without dexamethasone treatment. Three replicates were performed for each of the eight combinatorial conditions, resulting in a total of 24 single-end RNA-seq samples. Samples were quantified with kallisto v0.43.1 (default kmer length 31, with 30 bootstraps per sample), using an index constructed from Ensembl <em>Mus musculus</em> GRCm38 cDNA release 88. <br>RNA-Seq performed by:Frahm KA, Waldman JK, Luthra S, Rudine AC, Monaghan-Nichols AP, Chandran UR. A comparison of the sexually dimorphic dexamethasone transcriptome in mouse cerebral cortical and hypothalamic embryonic neural stem cells. Mol Cell Endocrinol. 2017; https://doi.org/10.1016/j.mce.2017.05.026.
DOI: 10.6084/m9.figshare.6201128
title: PONE-D-18-00210_Supporting Minimal Data.xlsx

description: Method Verification between Viroseq and ATCC HIV-1 Drug Resistance Genotyping Kits<br>
DOI: 10.6084/m9.figshare.6201128.v1
title: PONE-D-18-00210_Supporting Minimal Data.xlsx

description: Method Verification between Viroseq and ATCC HIV-1 Drug Resistance Genotyping Kits<br>
DOI: 10.6084/m9.figshare.6201107
title: Master Spread Sheet D6 only 4.30.18.xlsx

description: Dataset for " Prolonged restraint stressor exposure in outbred CD-1 mice impacts microbiota, colonic inflammation, and short chain fatty acids"<strong> </strong>
DOI: 10.6084/m9.figshare.6201107.v1
title: Master Spread Sheet D6 only 4.30.18.xlsx

description: Dataset for " Prolonged restraint stressor exposure in outbred CD-1 mice impacts microbiota, colonic inflammation, and short chain fatty acids"<strong> </strong>
DOI: 10.6084/m9.figshare.6201092
title: Figura 10a inhibición de errores en contexto de expresión escrita libre.jpg

description: Production of correct relative clauses in Chinese students learning Spanish at the A2-B1 level:<br><br>Two groups of Chinese students at level A2-B1 of Spanish (Experimental Group and Control Group) took an exam on Spanish relative clauses formation.<br>A few months later, the Experimental Group (n=34) learned that construction with cognitve based pedagogic materials. The Control Group (n=40) studied relative clauses with communicative textbooks.<br>Two weeks later, both groups took the exact same test they took before. The results indicate that the EG significantly reduced fossilizable mistakes while forming any type of relative clauses in descriptive tasks in Spanish.
DOI: 10.6084/m9.figshare.6201092.v1
title: Figura 10a inhibición de errores en contexto de expresión escrita libre.jpg

description: Production of correct relative clauses in Chinese students learning Spanish at the A2-B1 level:<br><br>Two groups of Chinese students at level A2-B1 of Spanish (Experimental Group and Control Group) took an exam on Spanish relative clauses formation.<br>A few months later, the Experimental Group (n=34) learned that construction with cognitve based pedagogic materials. The Control Group (n=40) studied relative clauses with communicative textbooks.<br>Two weeks later, both groups took the exact same test they took before. The results indicate that the EG significantly reduced fossilizable mistakes while forming any type of relative clauses in descriptive tasks in Spanish.
DOI: 10.6084/m9.figshare.6201029
title: Poorly Measured Confounders are More Useful on the Left than on the Right

description: Researchers frequently test identifying assumptions in regression-based research designs (which include instrumental variables or difference-in-differences models) by adding additional control variables on the right-hand side of the regression. If such additions do not affect the coefficient of interest (much), a study is presumed to be reliable. We caution that such invariance may result from the fact that the observed variables used in such robustness checks are often poor measures of the potential underlying confounders. In this case, a more powerful test of the identifying assumption is to put the variable on the left-hand side of the candidate regression. We provide derivations for the estimators and test statistics involved, as well as power calculations, which can help applied researchers interpret their findings. We illustrate these results in the context of estimating the returns to schooling.
DOI: 10.6084/m9.figshare.6201029.v2
title: Poorly Measured Confounders are More Useful on the Left than on the Right

description: Researchers frequently test identifying assumptions in regression-based research designs (which include instrumental variables or difference-in-differences models) by adding additional control variables on the right-hand side of the regression. If such additions do not affect the coefficient of interest (much), a study is presumed to be reliable. We caution that such invariance may result from the fact that the observed variables used in such robustness checks are often poor measures of the potential underlying confounders. In this case, a more powerful test of the identifying assumption is to put the variable on the left-hand side of the candidate regression. We provide derivations for the estimators and test statistics involved, as well as power calculations, which can help applied researchers interpret their findings. We illustrate these results in the context of estimating the returns to schooling.
DOI: 10.6084/m9.figshare.6201029.v1
title: Poorly Measured Confounders Are More Useful on the Left Than on the Right

description: Researchers frequently test identifying assumptions in regression based research designs (which include instrumental variables or differ-ence-in-differences models) by adding additional control variables on the right hand side of the regression. If such additions do not affect the coefficient of interest (much) a study is presumed to be reliable. We caution that such invariance may result from the fact that the observed variables used in such robustness checks are often poor measures of the potential underlying confounders. In this case, a more powerful test of the identifying assumption is to put the variable on the left hand side of the candidate regression. We provide derivations for the estimators and test statistics involved, as well as power calculations, which can help applied researchers interpret their findings. We illustrate these results in the context of estimating the returns to schooling.
DOI: 10.6084/m9.figshare.6200957
title: Code to reproduce the analysis in Benedetti-Cecchi_etal hybrid paper

description: Code to reproduce the results in Benedetti-Cecchi et al<b>. </b>Hybrid analysis. A description of these functions is provided in Appendix S1 of the paper.
DOI: 10.5281/zenodo.4006531
title: Raw Data for "Dopaminergic Modulation of human intertemporal-choice(2020)"

description: Raw behavioral data for "Dopaminergic modulation of human intertemporal-choice: a diffusion-model analysis using the D2-receptor antagonist-haloperidol". The data structure (CSV files) is explained in the Readme.txt. Variable names are also stored in the header of the csv-files.
DOI: 10.6084/m9.figshare.6200957.v1
title: Code to reproduce the analysis in Benedetti-Cecchi_etal hybrid paper

description: Code to reproduce the results in Benedetti-Cecchi et al<b>. </b>Hybrid analysis. A description of these functions is provided in Appendix S1 of the paper.
DOI: 10.5281/zenodo.4006530
title: Raw Data for "Dopaminergic Modulation of human intertemporal-choice(2020)"

description: Raw behavioral data for "Dopaminergic modulation of human intertemporal-choice: a diffusion-model analysis using the D2-receptor antagonist-haloperidol". The data structure (CSV files) is explained in the Readme.txt. Variable names are also stored in the header of the csv-files.
DOI: 10.6084/m9.figshare.6200951
title: SNP dataset

description: This is the primary SNP dataset for Soghigian et al. and contains more than 40,000 SNPs used in the analysis of eastern populations of <i>Culiseta mealnura</i>. These SNPs were called from a draft genome developed for the project and described in Soghigian et al. using the Stacks parameter r set to 0.75, requiring loci be present in at least 75% of samples.