cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1092
title: Data from: A key ecological trait drove the evolution of biparental care and monogamy in an amphibian

description: Linking specific ecological factors to the evolution of parental care
 pattern and mating system is a difficult task of key importance. We
 provide evidence from comparative analyses that an ecological factor
 (breeding pool size) is associated with the evolution of parental care
 across all frogs. We further show that the most intensive form of parental
 care (trophic egg feeding) evolved in concert with the use of small pools
 for tadpole deposition and that egg feeding was associated with the
 evolution of biparental care. Previous research on two Peruvian poison
 frogs (Ranitomeya imitator and Ranitomeya variabilis) revealed similar
 life histories, with the exception of breeding pool size. This key
 ecological difference led to divergence in parental care patterns and
 mating systems. We present ecological field experiments that demonstrate
 that biparental care is essential to tadpole survival in small (but not
 large) pools. Field observations demonstrate social monogamy in R.
 imitator, the species that uses small pools. Molecular analyses
 demonstrate genetic monogamy in R. imitator, the first example of genetic
 monogamy in an amphibian. In total, this evidence constitutes the most
 complete documentation to date that a single ecological factor drove the
 evolution of biparental care and genetic and social monogamy in an animal.
description: Presence/Absence Data on
 Parental Care and Pool Type in FrogsBrownAppendS1.prn
DOI: 10.5061/dryad.878m3
title: Data from: Rapid adaptation to climate facilitates range expansion of an invasive plant

description: Adaptation to climate, evolving over contemporary time scales, could
 facilitate rapid range expansion across environmental gradients. Here, we
 examine local adaptation along a climatic gradient in the North American
 invasive plant Lythrum salicaria. We show that the evolution of earlier
 flowering is adaptive at the northern invasion front where it increases
 fitness as much as, or more than, the effects of enemy release and the
 evolution of increased competitive ability. However, early flowering
 decreases investment in vegetative growth, which reduces fitness by a
 factor of 3 in southern environments where the North American invasion
 commenced. Our results demonstrate that local adaptation can evolve
 quickly during range expansion, overcoming environmental constraints on
 propagule production.
description: ColauttiBarrettData (.csv) and analysis (.R) files. Can be run in order (S1-S8) or see Science online supplementary materials for more detail.
DOI: 10.5061/dryad.8pv03
title: Data from: How tree species identity and diversity affect light transmittance to the understory in mature temperate forests

description: Light is a key resource for plant growth and is of particular importance
 in forest ecosystems, because of the strong vertical structure leading to
 successive light interception from canopy to forest floor. Tree species
 differ in the quantity and heterogeneity of light they transmit. We expect
 decreases in both the quantity and spatial heterogeneity of light
 transmittance in mixed stands relative to monocultures, due to
 complementarity effects and niche filling. 2. We tested the degree to
 which tree species identity and diversity affected, via differences in
 tree and shrub cover, the spatiotemporal variation in light availability
 before, during and after leaf expansion. Plots with different combinations
 of three tree species with contrasting light transmittance were selected
 to obtain a diversity gradient from monocultures to three species
 mixtures. Light transmittance to the forest floor was measured with
 hemispherical photography. 3. Increased tree diversity led to increased
 canopy packing and decreased spatial light heterogeneity at the forest
 floor in all of the time periods. During leaf expansion, light
 transmittance did differ between the different tree species and timing of
 leaf expansion might thus be an important source of variation in light
 regimes for understory plant species. Although light transmittance at the
 canopy level after leaf expansion was not measured directly, it most
 likely differed between tree species and decreased in mixtures due to
 canopy packing. A complementary shrub layer led, however, to similar light
 levels at the forest floor in all species combinations in our plots. 4.
 Synthesis We find that a complementary shrub layer exploits the higher
 light availability in particular tree species combinations. Resources at
 the forest floor are thus ultimately determined by the combined effect of
 the tree and shrub layer. Mixing species led to less heterogeneity in the
 amount of light, reducing abiotic niche variability.
description: light availability
 datafileThe research was
 conducted across 53 plots (30 m x 30 m) located in mature forests in the
 region of Ghent, Belgium (the ‘TREEWEB’ platform) Light transmittance was
 measured with hemispherical images before and after leaf expansion at four
 locations in each of the 53 plots. We calculated the gap light index
 (GLI), which is the total transmitted PAR to the forest floor as a
 percentage of total incident PAR above the canopy.light_availability_driad.csv
DOI: 10.15468/dl.wg47qw
title: Occurrence Download

description: A dataset containing 57925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Oenothera glazioviana"
 ]
}

 The dataset includes 57925 records from 778 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001137-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.782
title: Data from: Phylogeography and Molecular Systematics of the Peromyscus Aztecus Species Group (Rodentia: Muridae) Inferred Using Parsimony and Likelihood

description: Mice of the Peromyscus aztecus species group occur at mid to high
 elevations in several mountain ranges in the highlands of Middle America
 (Mexico and Central America), a region of high endemicity. We examined the
 biogeography of this group by conducting phylogenetic analyses of 668 bp
 of the mitochondrial cytochrome b (cyt b) gene. Phylogenetic analyses
 under both parsimony and likelihood frameworks produced the same
 topologies, but estimates of nodal support were artificially high in
 weighted parsimony analyses. This difference is attributed to the
 inability of parsimony to optimize branch lengths when evaluating
 topologies. These data indicate that the P. aztecus-like populations from
 south and east of the Isthmus of Tehuantepec currently assigned to P. a.
 oaxacensis represent a distinct species, with genetic distances as high as
 0.091. In addition, P. hylocetes is strongly divergent from Mexican
 populations of P. aztecus (genetic distances of 0.044--0.069), supporting
 the recognition of this taxon as a distinct species. The history of
 divergence in this group can be explained by a series of apparently early
 to middle Pleistocene vicariance events associated with glacial cycles.
 The Sierra Madre Occidental and Cordillera Transvolcanica each appear to
 be faunistically isolated, the Isthmus of Tehuantepec appears to have been
 a strong Pleistocene barrier, and the Sierra Madre Oriental has affinities
 with the Sierra Madre del Sur and the highlands of central Oaxaca.
description: Sullivan Data
 Setsull.txt
DOI: 10.5061/dryad.5m121
title: Data from: Introgressive hybridization as a promoter of genome reshuffling in natural homoploid fish hybrids (Cyprinidae, Leuciscinae)

description: Understanding the mechanisms underlying diversification and speciation by
 introgressive hybridization is currently one of the major challenges in
 evolutionary biology. Here, the analysis of hybridization between two
 pairs of Iberian Leuciscinae provided new data on independent hybrid zones
 involving Achondrostoma oligolepis (AOL) and Pseudochondrostoma duriense
 (PDU), and confirmed the occurrence of hybrids between AOL and
 Pseudochondrostoma polylepis (PPO). A multilevel survey combining
 morphological, genetic and cytogenomic markers on a vast population
 screening successfully sorted the selected fishes as admixed. Results were
 similar in both AOL × PDU and AOL × PPO systems. Overall, hybrid
 morphotypes, cytogenomic data and genetic profiling indicated preferential
 backcrossing and suggested AOL as a major genomic contributor. Moreover,
 results implied AOL as more permissive to introgression than PDU or PPO.
 Although PDU- and PPO-like individuals appeared more resilient to genome
 modifications, AOL appeared to be more involved and affected by the
 ongoing hybridization events, as chromosomal translocations were only
 found in AOL-like individuals. All hybrids analysed evidenced extensive
 ribosomal DNA (rDNA) polymorphism that was not found in parental species,
 but usually seen falling within the range of possible parental
 combinations. Yet, transgressive phenotypes that cannot be explained by
 normal recombination, including more rDNA clusters than expected or the
 occurrence of syntenic rDNAs, were also detected. Present results proved
 rapid genomic evolution providing the genetic novelty for species to
 persist. In addition, although the ultimate consequences of such
 apparently extensive and recurrent events remain unknown, modern
 genome-wide methodologies are of great promise towards answering questions
 concerning the causes, dynamics and impacts of hybridization.
description: table_dryad_samplingTable with sampling detailsMicroSousaStructMicrosatellite data for inference of genetic introgression in Sousa populationMicroCaimaStructMicrosatellite data for inference of genetic introgression in the Caima populationMicroSerraStructMicrosatellite data for inference of genetic admixture in Serra populationMicroMondStructMicrosatllite data for inference of genetic admixture in Mondego population
DOI: 10.5061/dryad.3gk6pr4
title: Data from: Vegetation trends over eleven years on mountain summits in NW Argentina

description: As global climate change leads to warmer and dryer conditions in the
 central Andes, alpine plant communities are forced to upward displacements
 following their climatic niche. Species range shifts are predicted to have
 major impacts on alpine communities by reshuffling species composition and
 abundances. Using a standardized protocol, we surveyed alpine plant
 communities in permanent plots on four high Andean summits in NW
 Argentina, which range from 4040 to 4740 m a.s.l. After a baseline survey
 in 2006-2008, we re-surveyed the same plots in 2012, and again in 2017. We
 found a significant decrease in plant cover, species richness and
 diversity across the elevation gradient in the three censuses, and a
 strongly decrease in soil temperature along the elevation gradient. We
 found a high plant community turnover (37-49%) among censuses,
 differentiating according to summits and aspects; major changes of
 community turnover were observed in the lowest summit (49%) and on the
 northern (47%) and western (46%) aspects. Temporal patterns in community
 changes were represented by increases in plant cover in the highest
 summit, in richness in the lower summit, and in diversity (Shannon index)
 in the four summits, over time, with promotion of small herbs and
 non-tussock grasses. We suggest that the observed trend in plant community
 dynamics responds to short term temperature and precipitation variability,
 which is influenced by El Niño Southern oscillation (ENSO), and due to
 time-lags in plant community response, it may take much longer than one
 decade for the observed trends to become stables and statistically
 significant. Our study provides an important foundation for documenting
 more profound changes in these subtropical alpine plant communities as
 global climate change continues.
description: Species cover by aspect
 and summit at 1m2 plot scalePlant species cover (%)
 by aspect (N, S, E and W) and summit (1-ALZ, 2-HUA, 3-SIN, 4-ISA) at 1m2
 plot scale (mean of four plots by aspect). Total of 16 plot by summit. For
 base line (2006-08), re-survey 1 (2012) and resurvey 2 (2017), following
 GLORIA protocol, in Cumbres Calchaquies, Tucuman,
 Argentina.Data_base_Dryad.xlsx
DOI: 10.5281/zenodo.18384074
title: Data for "Effects of a single tDCS with mirror therapy stimulation on hand function in healthy individuals"

description: This dataset contains motor performance measurements from a study investigating the effects of a single session of anodal transcranial direct current stimulation (tDCS) combined with mirror therapy on hand function in healthy adults. The study employed a single-group repeated measures design, with assessments conducted before and immediately after the intervention.
DOI: 10.5281/zenodo.18384075
title: Data for "Effects of a single tDCS with mirror therapy stimulation on hand function in healthy individuals"

description: This dataset contains motor performance measurements from a study investigating the effects of a single session of anodal transcranial direct current stimulation (tDCS) combined with mirror therapy on hand function in healthy adults. The study employed a single-group repeated measures design, with assessments conducted before and immediately after the intervention.
DOI: 10.5061/dryad.dj524
title: Data from: Rat eradication and the resistance and resilience of passerine bird assemblages in the Falkland Islands

description: Norway rats (Rattus norvegicus) were introduced to the Falkland Islands
 and are detrimental to native passerines. Rat eradication programs are
 being used to help protect the avifauna. The present study assesses the
 effectiveness of eradication programs while using this conservation
 practice as a natural experiment to explore the ecological resistance,
 resilience, and homeostasis of bird communities. We conducted bird surveys
 on 230 islands: 85 in the presence of rats, 108 that were historically
 free of rats, and 37 from which rats had been eradicated. Bird detection
 data were used to build occupancy models for each species and estimate
 species-area relationships. Count data were used to estimate relative
 abundance and community structure. Islands with invasive rats had reduced
 species richness of passerines and a different community structure than
 islands on which rats were historically absent. Although the species
 richness of native passerines was remarkably similar on eradicated and
 historically rat-free islands, community structure on eradicated islands
 was more similar to that of rat-infested islands than to historically
 rat-free islands. The results suggest that in the Falkland Islands,
 species richness of passerines is not resistant to invasive rats, but
 seems to be resilient following their removal. In contrast, community
 structure seems to be neither resistant nor resilient. From a conservation
 perspective, rat eradication programs in the Falkland Islands appear to be
 effective at restoring native species richness, but they are not
 necessarily beneficial for species of conservation concern. For species
 that do not recolonize, translocations following eradications may be
 necessary.
description: Detected_Species_Richness_for_each_IslandThis file contains the species detected on each island and information about the island. A species was detected if a '1' appears for that species on that island. The species was not detected if a '0' appears for that species on that island.DetectedS.csvRelative_Abunance_of_each_species_on_each_islandThis file contains the relative abundance values for each species on each island. Values for each species represent the number of individuals counted per kilometers of transect. Metadata associated with each island are also included.Relative_Abunance.csv
DOI: 10.5061/dryad.17tp1
title: Data from: Epidemiological survey of the feasibility of broadband ultrasound attenuation measured using calcaneal quantitative ultrasound to predict the incidence of falls in the middle aged and elderly

description: Objectives: We investigated whether calcaneal quantitative ultrasound
 (QUS-C) is a feasible tool for predicting the incidence of falls. Design:
 Prospective epidemiological cohort study. Setting: Community-dwelling
 people sampled in central western Taiwan. Participants: A cohort of
 community-dwelling people who were ≥40 years old (men: 524; women: 676) in
 2009–2010. Follow-up questionnaires were completed by 186 men and 257
 women in 2012. Methods: Structured questionnaires and broadband ultrasound
 attenuation (BUA) data were obtained in 2009–2010 using QUS-C, and
 follow-up surveys were done in a telephone interview in 2012. Using a
 binary logistic regression model, the risk factors associated with a new
 fall during follow-up were analysed with all significant variables from
 the bivariate comparisons and theoretically important variables. Primary
 outcome measures: The incidence of falls was determined when the first new
 fall occurred during the follow-up period. The mean follow-up time was
 2.83 years. Results: The total incidence of falls was 28.0 per 1000
 person-years for the ≥40 year old group (all participants), 23.3 per 1000
 person-years for the 40–70 year old group, and 45.6 per 1000 person-years
 for the ≥70 year old group. Using multiple logistic regression models, the
 independent factors were current smoking, living alone, psychiatric drug
 usage and lower BUA (OR 0.93; 95% CI 0.88 to 0.99, p&lt;0.05) in the
 ≥70 year old group. Conclusions: The incidence of falls was highest in the
 ≥70 year old group. Using QUS-C-derived BUA is feasible for predicting the
 incidence of falls in community-dwelling elderly people aged ≥70 years.
description: BMJopen-Role of
 Broadband Ultrasound Attenuation Measured by Calcaneal Quantitative
 Ultrasound in the Fall Incidence in Middle-Aged and Old
 PeopleThis data file was the
 raw data of the article which is submitted to BMJ open journal with the
 article title named as:Role of Broadband Ultrasound Attenuation Measured
 by Calcaneal Quantitative Ultrasound in the Fall Incidence in Middle-Aged
 and Old People. Thanks!
DOI: 10.5061/dryad.hv58f
title: Data from: Invasive rat eradication strongly impacts plant recruitment on a tropical atoll

description: Rat eradication has become a common conservation intervention in island
 ecosystems and its effectiveness in protecting native vertebrates is
 increasingly well documented. Yet, the impacts of rat eradication on plant
 communities remain poorly understood. Here we compare native and
 non-native tree and palm seedling abundance before and after eradication
 of invasive rats (Rattus rattus) from Palmyra Atoll, Line Islands, Central
 Pacific Ocean. Overall, seedling recruitment increased for five of the six
 native trees species examined. While pre-eradication monitoring found no
 seedlings of Pisonia grandis, a dominant tree species that is important
 throughout the Pacific region, post-eradication monitoring documented a
 notable recruitment event immediately following eradication, with up to
 688 individual P. grandis seedlings per 100m2 recorded one month
 post-eradication. Two other locally rare native trees with no observed
 recruitment in pre-eradication surveys had recruitment post-rat
 eradication. However, we also found, by five years post-eradication, a
 13-fold increase in recruitment of the naturalized and range-expanding
 coconut palm Cocos nucifera. Our results emphasize the strong effects that
 a rat eradication can have on tree recruitment with expected long-term
 effects on canopy composition. Rat eradication released non-native C.
 nucifera, likely with long-term implications for community composition,
 potentially necessitating future management interventions. Eradication,
 nevertheless, greatly benefitted recruitment of native tree species. If
 this pattern persists over time, we expect long-term benefits for flora
 and fauna dependent on these native species.
description: Wolf_PalmyraVegetationManuscript_Dec2017There are two spreadsheets: 1 - Seedling Transect data; 2 - Rare Trees data. Each contains the name of the transect or survey point, and the seedling count.
DOI: 10.5061/dryad.4q7813g
title: Data from: Simultaneous exposure to a pulsed and a prolonged anthropogenic stressor can alter consumer multifunctionality

description: Ecosystems face multiple anthropogenic threats globally, and the effects
 of these environmental stressors range from individual-level organismal
 responses to altered system functioning. Understanding the combined
 effects of stressors on process rates mediated by individuals in
 ecosystems would greatly improve our ability to predict organismal
 multifunctionality (e.g. multiple consumer-mediated functions). We
 conducted a laboratory experiment to test direct and indirect, as well as
 immediate and delayed effects of a heat wave (pulsed stress) and
 micropollutants (MPs) (prolonged stress) on individual consumers (the
 great pond snail Lymnaea stagnalis) and their multifunctionality (i.e.
 consumption of basal resources, growth, reproduction, nutrient excretion
 and organic-matter cycling). We found that stressful conditions increased
 the process rates of multiple functions mediated by individual consumers.
 Specifically, the artificial heat wave increased process rates in the
 majority of the quantified functions (either directly or indirectly),
 whereas exposure to MPs increased consumption of basal resources which
 lead to increases in the release of nutrients and fine particulate organic
 matter. Moreover, snails exposed to a heat wave showed decreased
 reproduction and nutrient excretion after the heat-wave, indicating the
 potential for ecologically relevant delayed effects. Our study indicates
 that the immediate and delayed effects of stressors on individual
 organisms may directly and indirectly impact multiple ecosystem functions.
 In particular, delayed effects of environmental stress on individual
 consumers may cumulatively impede recovery due to decreased functioning
 following a perturbation. Reconciling these results with studies
 incorporating responses at higher levels of biological complexity will
 enhance our ability to forecast how individual responses upscale to
 ecosystem multifunctionality.
description: Salo et al. 2018 OIKOS
 consumer multifunctionalityThe data file includes
 all the data used in the Structural Equation Modeling and other statistics
 in the Salo et al. 2018 OIKOS paper. Treatments include temperature (14
 and 24), chemical treatment (micropollutants, technical control) and
 block. Both samplings from the Heat wave phase and recovery phase are
 given in the same file. Response variables include FPOM production,
 consumption of Potamogeton and Alnus, specific growth rate, fat content,
 number of eggs, nutrients (PCA axis) and respiration. Data from dead
 individuals is excluded. Empty cells indicate missing
 values.Data
 till Dryad_Salo.xlsx