cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7934/x30820
title: Three new malleodectids (Marsupialia, Malleodectidae) from the Late Oligocene and Early Miocene deposits of the Riversleigh World Heritage Area, northwestern Queensland [X30820] Dasyuromorphian craniodental and postcranial morphological matrix
DOI: 10.7934/x30821
title: Convergent evolution of diverse jaw-joints in mammaliamorphs [X30821] Convergent evolution of diverse jaw-joints in mammaliamorph
DOI: 10.7934/x30832
title: The echinoderm classes Stylophora and Homoiostelea: non Calcichordata [X30832] Dendrocystitidae_Parsley_1997_KEY
DOI: 10.7934/x30833
title: The first record of Pliotragus (Artiodactyla: Bovidae) in the Early Pleistocene of eastern Asia; contribution to its systematics, palaeohabitat and palaeobiogeography [X30833] Morphological data matrix only
DOI: 10.7934/x30864
title: Y. Qiao, M. Iijima, J. Liu. 2025. A new hupehsuchian (Reptilia: Ichthyosauromorpha) with widely spaced autopodium from the marine Lower Triassic of South China. Journal of Systematic Palaeontology. (In Press) [X30864] A new hupehsuchian (Reptilia: Ichthyosauromorpha) with widely spaced autopodium from the marine Lower Triassic of South China
DOI: 10.7934/x30876
title: Mosaic Morphology in Podocnemididae Revealed by a New Turtle from the Middle Miocene La Venta Biome, Colombia [X30876] Podocnemididae Turtles Matrix
DOI: 10.7934/x30898
title: RE-EVALUATION OF THE CARBONIFEROUS TETRAPOD ASAPHESTERA PLATYRIS, WITH COMMENTS ON THE AMNIOTE FAUNA OF THE JOGGINS FORMATION, CANADA [X30898] Asaphestera
DOI: 10.7934/x30914
title: A new long and narrow-snouted ichthyosaur illuminates a complex faunal turnover during an undersampled Early Jurassic (Pliensbachian) interval [X30914] A new long and narrow-snouted ichthyosaur illuminates a complex faunal turnover during an undersampled Early Jurassic (Pliensbachian) interval
DOI: 10.15468/dl.48e6qw
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Aves [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL)",
 "BasisOfRecord is one of (Specimen)",
 "PublishingOrg is one of (f9b67ad0-9c9b-11d9-b9db-b8a03c50a862)",
 "Sex is one of (Female, Male)",
 "Country is one of (Colombia)",
 "StateProvince is one of (Putumayo)"
 ]
 }
 ]
}

 The dataset includes 259 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029667-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7934/x30937
title: A new species of Elkanemys (Pleurodira: Pelomedusoides) from the Portezuelo Formation (Turonian–Coniacian) of Patagonia, Argentina (DATA MATRIX) [X30937] Elkanemys calestis matrix
DOI: 10.6075/j0h70g60
title: Data from: A Regional High Resolution AI Weather Model for the Prediction of Atmospheric Rivers and Extreme Precipitation

description: The files contain total precipitation forecasts generated by two AI models, provided in NetCDF format. Each file includes forecasts initialized on a specific date by a particular model. The files are organized by model, resolution, and year, covering three winter seasons: 2020–2021, 2021–2022, and 2022–2023. Data for each year are stored in separate zip files. In the naming convention of the zip files, “AI-31km” and “AI-6km” refer to 6-hour accumulated precipitation forecasts produced by the global and stretched-grid AI models, respectively. The precipitation regridded to a 4km grid refers to 24-hour accumulated data interpolated to PRISM’s 4-km resolution over the western United States.
description: The underlying code for this study is available in a Github repository and can be accessed via this link: https://github.com/CW3E/regional-ai-6km.
DOI: 10.5281/zenodo.17594481
title: Redd count monitoring data for Yellowstone cutthroat trout spawning in groundwater-fed tributaries to the Snake River, Wyoming

description: This dataset contains long-term redd count data for populations of Yellowstone cutthroat trout (Oncorhychus virginalis bouvieri) spawning in groundwater-fed tributaries to the upper Snake River, Wyoming, USA. Redd count data were provided by current Wyoming Game and Fish Department (WGFD) personnel or obtained from annual departmental reports. Annual reports can be made available from WGFD upon request. Some fields contain missing data (NA) in certain years and streams. Missing data typically occurs prior to the year 2000, before which robust departmental record keeping policies were in place.

Redd count data were collected by the WGFD’s Jackson Fisheries Management Team between 1971 and 2021. Observers conducted a single redd count annually on the approximate date of peak spawning activity, typically in early July. Observers recorded the number and location of redds on maps of the spawning grounds following a two-step process. First redd clusters (single redds or multiple redds supimposed) were identified. Second, observers estimated the minimum and maximum number of redds in each cluster based on the number of distinct redd pots and the total area of gravel disturbance as compared to the average footprint of a single redd. For each stream and year, counts are summed to compute the total number of clusters, the minimum number of redds, and the maximum number of redds. The Wyoming Game and Fish Department reports the average number of redds ([minimum count + maximum count] / 2) as the official redd count in annual reports published by the agency. Surveys were conducted either along the entire stream from the mainstem confluence to the terminal headwaters or on pre-defined index reaches when access is restricted by private land ownership. A detailed description and evaluation of this redd count program can be found in Baldock et al. 2023 (https://doi.org/10.1139/cjfas-2022-0267).
DOI: 10.5281/zenodo.17594482
title: Redd count monitoring data for Yellowstone cutthroat trout spawning in groundwater-fed tributaries to the Snake River, Wyoming

description: This dataset contains long-term redd count data for populations of Yellowstone cutthroat trout (Oncorhychus virginalis bouvieri) spawning in groundwater-fed tributaries to the upper Snake River, Wyoming, USA. Redd count data were provided by current Wyoming Game and Fish Department (WGFD) personnel or obtained from annual departmental reports. Annual reports can be made available from WGFD upon request. Some fields contain missing data (NA) in certain years and streams. Missing data typically occurs prior to the year 2000, before which robust departmental record keeping policies were in place.

Redd count data were collected by the WGFD’s Jackson Fisheries Management Team between 1971 and 2021. Observers conducted a single redd count annually on the approximate date of peak spawning activity, typically in early July. Observers recorded the number and location of redds on maps of the spawning grounds following a two-step process. First redd clusters (single redds or multiple redds supimposed) were identified. Second, observers estimated the minimum and maximum number of redds in each cluster based on the number of distinct redd pots and the total area of gravel disturbance as compared to the average footprint of a single redd. For each stream and year, counts are summed to compute the total number of clusters, the minimum number of redds, and the maximum number of redds. The Wyoming Game and Fish Department reports the average number of redds ([minimum count + maximum count] / 2) as the official redd count in annual reports published by the agency. Surveys were conducted either along the entire stream from the mainstem confluence to the terminal headwaters or on pre-defined index reaches when access is restricted by private land ownership. A detailed description and evaluation of this redd count program can be found in Baldock et al. 2023 (https://doi.org/10.1139/cjfas-2022-0267).
DOI: 10.15468/dl.5n8uze
title: Occurrence Download

description: A dataset containing 60847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Observation.org, Nature data from around the World, NMNH Extant Specimen Records (USNM, US), Paleobiology Database, Global soil microbiomes: A new frontline of biome-ecology research, A global database for the distributions of crop wild relatives, EOD – eBird Observation Dataset, Global soil organisms, The Himalayan Uplands Plant database (HUP Version 1), iNaturalist Research-grade Observations, Pl@ntNet automatically identified occurrences)",
 "GadmGid is Z01.14.7_1"
 ]
}

 The dataset includes 60847 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011835-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddw4ha
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon larselli Burns, 1954)"
 ]
}

 The dataset includes 298 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003821-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px2atj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euonymus japonicus",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049094-250811113504898/datasets/export for details.
DOI: 10.15468/dl.pt69t4
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euonymus japonicus",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049095-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9d5aj
title: Occurrence Download

description: A dataset containing 81656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex halleriana"
 ]
}

 The dataset includes 81656 records from 691 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049016-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25378/janelia.13123385
title: Isotropic 3D electron microscopy reference data of COS-7 cell overexpressing ER and mitochondria markers for correlative light and electron microscopy studies (jrc_cos7-11)

description: Within cells, the spatial compartmentalization of thousands of distinct proteins serves a multitude of diverse biochemical needs. Correlative super-resolution (SR) fluorescence and electron microscopy (EM) can elucidate protein spatial relationships to global ultrastructure, but has suffered from tradeoffs of structure preservation, fluorescence retention, resolution, and field of view. We developed a platform for three-dimensional cryogenic SR and focused ion beam-milled block-face EM across entire vitreously frozen cells. The approach preserves ultrastructure while enabling independent SR and EM workflow optimization. We discovered unexpected protein-ultrastructure relationships in mammalian cells including intranuclear vesicles containing endoplasmic reticulum-associated proteins, web-like adhesions between cultured neurons, and chromatin domains subclassified on the basis of transcriptional activity. Our findings illustrate the value of a comprehensive multimodal view of ultrastructural variability across whole cells.Sample: COS-7 cell overexpressing mEmerald-ER3 and Halo/JF525-TOMM20 (ATCC CRL-1651)Protocol: High pressure freezing, freeze-substitution resin embedding with 2% OsO4 0.1% UA 3% H2O in acetone; resin embedding in Eponate 12.Contributions: Sample provided by Melanie Freeman (HHMI/Janelia), prepared for imaging by Gleb Shtengel (HHMI/Janelia), with imaging and post-processing by C. Shan Xu (HHMI/Janelia).Dataset ID: jrc_cos7-11Final voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)Dimensions (µm): 70 x 8 x 100 (X, Y, Z)Acquisition date: 2018-04-27Dataset URL: s3://janelia-cosem-datasets/jrc_cos7-11/jrc_cos7-11.zarr/recon-1/em/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_cos7-11Publication: Hoffman et al., 2020 (10.1126/science.aaz5357)<br>
DOI: 10.25378/janelia.13114514
title: Isotropic 3D electron microscopy reference data of accessory calyx of a 5 day-old male Drosophila (jrc_fly-acc-calyx-1)

description: Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations inasmuch as they only visualize a single slice or a relatively small volume of the cell, respectively. Here, we overcome these limitations by long-term imaging whole cells and tissues via the enhanced Focus Ion Beam Scanning Electron Microscopy (FIB-SEM) platform in high resolution mode with month-long acquisition duration. We use this approach to generate reference 3D image data sets at 4-nm isotropic voxels. Together with subsequent segmentation, we hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents, thus addressing questions related to cell identities, cell morphologies, cell-cell interactions, as well as intracellular organelle organization and structure.<br><b>Accessory calyx</b> is the input region of the mushroom body, a center of associative learning in insect brain. In <i>Drosophila</i>, the calyx has three small subregions called accessory calyces. As well studied for its role in olfactory associative learning, the mushroom body also receives inputs from several other sensory modalities. While the main calyx receives olfactory input as a main, accessory calyces are largely sites of non-olfactory input. The unique ability of enhanced FIB-SEM to image tissues at 4-nm isotropic voxels encompassing particular region of interests enables us to examine the fine structures in great detail, which allows for new biological insights.Sample: Accessory calyx of a 5 day-old adult male Drosophila (Genome type: iso Canton S G1 x w1118 iso 5905).Protocol: Chemical Fixation, ORTO-Lead-EPTA staining via progressive lowering of temperature and low temperature staining (PLT-LTS) heavy metal enhancement protocol.Contributions: Sample provided by Zhiyuan Lu (HHMI/Janelia), and prepared, imaged and post-processed by Song Pang (HHMI/Janelia).Dataset ID: jrc_fly-acc-calyx-1Final voxel size (nm): 4.00 x 4.00 x 3.72 (X, Y, Z)Dimensions (µm): 50 x 40 x 81 (X, Y, Z)Acquisition date: 2019-12-06Dataset URL: s3://janelia-cosem-datasets/jrc_fly-acc-calyx-1/jrc_fly-acc-calyx-1.zarr/recon-1/em/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_fly-acc-calyx-1<br>Publication: “Isotropic 3D electron microscopy reference library of whole cells and tissues” by C. Shan Xu et al. (in preparation)
DOI: 10.25378/janelia.13114514.v1
title: Isotropic 3D electron microscopy reference data of accessory calyx of a 5 day-old male Drosophila (jrc_fly-acc-calyx-1)

description: Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations inasmuch as they only visualize a single slice or a relatively small volume of the cell, respectively. Here, we overcome these limitations by long-term imaging whole cells and tissues via the enhanced Focus Ion Beam Scanning Electron Microscopy (FIB-SEM) platform in high resolution mode with month-long acquisition duration. We use this approach to generate reference 3D image data sets at 4-nm isotropic voxels. Together with subsequent segmentation, we hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents, thus addressing questions related to cell identities, cell morphologies, cell-cell interactions, as well as intracellular organelle organization and structure.<br><b>Accessory calyx</b> is the input region of the mushroom body, a center of associative learning in insect brain. In <i>Drosophila</i>, the calyx has three small subregions called accessory calyces. As well studied for its role in olfactory associative learning, the mushroom body also receives inputs from several other sensory modalities. While the main calyx receives olfactory input as a main, accessory calyces are largely sites of non-olfactory input. The unique ability of enhanced FIB-SEM to image tissues at 4-nm isotropic voxels encompassing particular region of interests enables us to examine the fine structures in great detail, which allows for new biological insights.Sample: Accessory calyx of a 5 day-old adult male Drosophila (Genome type: iso Canton S G1 x w1118 iso 5905).Protocol: Chemical Fixation, ORTO-Lead-EPTA staining via progressive lowering of temperature and low temperature staining (PLT-LTS) heavy metal enhancement protocol.Contributions: Sample provided by Zhiyuan Lu (HHMI/Janelia), and prepared, imaged and post-processed by Song Pang (HHMI/Janelia).Dataset ID: jrc_fly-acc-calyx-1Final voxel size (nm): 4.00 x 4.00 x 3.72 (X, Y, Z)Dimensions (µm): 50 x 40 x 81 (X, Y, Z)Acquisition date: 2019-12-06Dataset URL: s3://janelia-cosem-datasets/jrc_fly-acc-calyx-1/jrc_fly-acc-calyx-1.zarr/recon-1/em/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_fly-acc-calyx-1<br>Publication: “Isotropic 3D electron microscopy reference library of whole cells and tissues” by C. Shan Xu et al. (in preparation)
DOI: 10.15468/dl.g9uur7
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Hong Kong",
 "TaxonKey is Calligaster himalayensis"
 ]
}

 The dataset includes 56 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001951-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ss/jkn20e
title: Drugs Monologen interview Anoniem 3

description: Drugs Monologen was een digital storytelling en oral history project van de Open Universiteit (Faculteit Cultuurwetenschappen) en het Poppi Drugs Museum dat liep van oktober 2023 tot oktober 2025. Het project draaide om het bestuderen van de Nederlandse drugsgeschiedenis vanuit het perspectief van mensen die zelf drugs gebruikten in de periode ca. 1960-2000. In dit kader vonden 28 oral history interviews en 5 thematische groepsinterviews plaats. Daarnaast werd een speciale app ontwikkeld waarmee deelnemers op de Drugs Monologen website hun eigen historische ‘monoloog’ konden vertellen en bijdragen aan het onderzoek. Deze laatste methode leverde 51 monologen op. De oral history interviews, groepsinterviews en monologen waarvoor van de verteller toestemming werd verkregen voor gebruik voor toekomstig onderzoek zijn hier bewaard. Bij alle Nederlandstalige items is een transcriptie toegevoegd. Dit item maakt deel uit van deze datacollectie. Vanwege de privacygevoelige aard van de data kunnen deze alleen worden geraadpleegd na via de daartoe bestemde knop toestemming te hebben aangevraagd en verkregen voor toegang tot deze dataset.
DOI: 10.15468/dl.ux28h5
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
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 The dataset includes 440 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001953-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18323102
title: Arctic Soil Moisture Retrieval from Fengyun-3 GNSS-R: The Dual Regulatory Role of Snow Water Equivalent

description: This dataset comprises a collection of data used for soil moisture retrieval and validation, including input feature sets for Random Forest modeling, Soil Moisture Active Passive (SMAP) radiometer data for accuracy validation, in-situ measurements from the International Soil Moisture Network (ISMN), and the retrieved soil moisture results derived from FengYun-3 (FY-3) satellite observations. The data covers the period from June 2024 to September 2024.

In the associated manuscript "Arctic Soil Moisture Retrieval from Fengyun-3 GNSS-R: The Dual Regulatory Role of Snow Water Equivalent", these data were employed to train and test a Random Forest machine learning model.
DOI: 10.15468/dl.q8ryjw
title: Occurrence Download

description: A dataset containing 13604 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "TaxonKey is Calotropis procera"
 ]
}

 The dataset includes 13604 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001952-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.