cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25568580.v1
title: Datasets as .RData files (and .txt files as back-ups) and multivariate models (.rds format) to reproduce models of "Linking proximate drivers and fitness returns of vigilance in a large ungulate". see read_me.csv for interpretation of variables.

description: Datasets as .RData files (and .txt files as back-ups) and multivariate models (.rds format) to reproduce models of "Linking proximate drivers and fitness returns of vigilance in a large ungulate". see read_me.csv for interpretation of variables.
DOI: 10.6084/m9.figshare.27178755.v1
title: Supplementary Material for: Prevalence, clinical features, and outcomes of young patients with idiopathic pulmonary fibrosis

description: Introduction: 
Idiopathic pulmonary fibrosis (IPF) can occur at any age; however, studies on younger IPF patients are scarce because it primarily affects the elderly. This study aimed to investigate the clinical features and outcomes of younger IPF patients.

Methods: 
We analyzed the National Korean Health Insurance Review and Assessment Service (HIRA) database from 2015 to 2021. Patients with IPF were identified using the International Classification of Diseases 10th Revision (ICD-10) codes and the Rare Intractable Diseases codes and were categorized into three age groups: &lt; 50, ≥ 50 & &lt; 65, and ≥ 65 years. The risk of acute exacerbation (AE) and mortality were analyzed. 

Results: Among 4,243 patients with IPF, 91 were under 50. These younger patients, who were predominantly female, exhibited less comorbidities and received more systemic steroids, whereas older group received more pirfenidone. Although AE risk increased with age, it was not statistically significant. Mortality and lung transplantation risks increased notably with age from the &lt; 50 group to the ≥ 50 & &lt; 65 group (hazard ratio [HR]: 1.52, 95% confidence interval [CI]: 0.93-2.49) and the ≥ 65 group (HR: 2.44, 95% CI: 1.51-3.93). These risks were influenced by factors such as age, comorbidities, previous AEs, and steroid use. Conversely, pirfenidone treatment reduced the risk.

Conclusion: While younger IPF patients had a lower risk of mortality and lung transplantation, with no significant differences in the risk of AEs, they were less likely to receive antifibrotic therapy and more often treated with steroids, which may affect outcomes. Early, targeted treatment strategies, including antifibrotic use, are crucial for improving their prognosis
DOI: 10.5281/zenodo.13890737
title: Denoised data for the manuscript "Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data"

description: This dataset contains denoised sections of Distributed Acoustic Sensing (DAS) data, generated using a J-invariant autoencoder. It facillitates the reproduction of the results presented in the paper "Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data."

Abstract:One major challenge in cryoseismology is that signals of interest are often buried within the high noise level emitted by a multitude of environmental processes. Events of interest potentially stay unnoticed and remain unanalyzed, particularly because conventional sensors cannot monitor an entire glacier. However, with Distributed Acoustic Sensing (DAS), we can observe seismicity over multiple kilometers. DAS systems turn common fiber-optic cables into seismic arrays that measure strain rate data, enabling researchers to acquire seismic data in hard-to-access areas with high spatial and temporal resolution. We deployed a DAS system on Rhonegletscher, Switzerland, using a 9 km long fiberoptic cable that covered the entire glacier, from its accumulation to its ablation zone, recording seismicity for one month. The highly active and dynamic cryospheric environ ment, in combination with poor coupling, resulted in DAS data characterized by a low Signal-to-Noise Ratio (SNR) compared to classical point sensors. Our objective is to ef fectively denoise this dataset.We use a self-supervised J -invariant U-net autoencoder capable of separating incoherent environmental noise from temporally and spatially coherent signals of interest (e.g., stick-slip or crevasse signals). The method shows enhanced inter-channel coherence, increased SNR, and significantly improved visibility of the icequakes. Further, we compare different training data types varying in recording position, wavefield component, and waveform diversity. Our approach has the potential to enhance the detection capabilities of events of interest in cryoseismological DAS data, hence to improve the understanding of processes within Alpine glaciers.
DOI: 10.5281/zenodo.13890738
title: Denoised data for the manuscript "Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data"

description: This dataset contains denoised sections of Distributed Acoustic Sensing (DAS) data, generated using a J-invariant autoencoder. It facillitates the reproduction of the results presented in the paper "Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data."

Abstract:One major challenge in cryoseismology is that signals of interest are often buried within the high noise level emitted by a multitude of environmental processes. Events of interest potentially stay unnoticed and remain unanalyzed, particularly because conventional sensors cannot monitor an entire glacier. However, with Distributed Acoustic Sensing (DAS), we can observe seismicity over multiple kilometers. DAS systems turn common fiber-optic cables into seismic arrays that measure strain rate data, enabling researchers to acquire seismic data in hard-to-access areas with high spatial and temporal resolution. We deployed a DAS system on Rhonegletscher, Switzerland, using a 9 km long fiberoptic cable that covered the entire glacier, from its accumulation to its ablation zone, recording seismicity for one month. The highly active and dynamic cryospheric environ ment, in combination with poor coupling, resulted in DAS data characterized by a low Signal-to-Noise Ratio (SNR) compared to classical point sensors. Our objective is to ef fectively denoise this dataset.We use a self-supervised J -invariant U-net autoencoder capable of separating incoherent environmental noise from temporally and spatially coherent signals of interest (e.g., stick-slip or crevasse signals). The method shows enhanced inter-channel coherence, increased SNR, and significantly improved visibility of the icequakes. Further, we compare different training data types varying in recording position, wavefield component, and waveform diversity. Our approach has the potential to enhance the detection capabilities of events of interest in cryoseismological DAS data, hence to improve the understanding of processes within Alpine glaciers.
DOI: 10.15468/dl.3gvsr8
title: Occurrence Download

description: A dataset containing 1259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.29443 53.29625,1.76010 53.29625,1.76010 58.92125,-12.29443 58.92125,-12.29443 53.29625))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phellodon fuligineoalbus (J.C.Schmidt) R.E.Baird",
 "Year 1951-2024"
 ]
}

 The dataset includes 1259 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045570-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5nc5sq6x
title: MassIVE MSV000096030 - Mangiferin and norathyriol in fecal cultures and Pantetheine conversion by the microbiome in IBD
title: Dataset comprises 2 studies of PI Sahar El Aidy project EXT33. Measured at the Mass Spectrometry Core Facility in 2024. Both contain metabolomics and lipidomics datasets Study 1 MAN study Mangiferin and norathyriol in fecal cultures Members of the human gut microbiota are able to convert the C glycosidic compound mangiferin to its aglycone norathyriol. We have inoculated human fecal cultures with mangiferin and with norathyriol. We have observed 3 out of 6 cultures were able to convert mangiferin into norathyriol. We would like to know what the differences are between converting and non-converting cultures and also the effect on the microbiota or host when norathyriol is present vs. when it is not. Therefore these cultures will be sequenced, but we also want to know more about the metabolites being produced by the microbiota and if there are differences between converters, non-converters and presence or absence of norathyriol. Study 2 PAN study Pantetheine conversion by the microbiome in IBD Human faecal slurry from 6 healthy individuals and 6 IBD subjects were inoculated for 24 h with Pantetheine PAN and with norathyriol. Previous studies suggested that members of the microbiome are able to convert PAN. However, the products of these conversions have not been confirmed. Some studies suggested the production of 4-phosphopanthetein or cysteamine and vitamin B5.
DOI: 10.15468/dl.mrx3qq
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence)",
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0, Pending, Incompatible)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Lepidochelys olivacea (Eschscholtz, 1829), Lepidochelys olivacea kempii Schmidt, 1953, Lepidochelys olivacea remivaga (Hay, 1908))"
 ]
}

 The dataset includes 197 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045571-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11543483
title: Dataset for 2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors

description: The dataset contains all relevant data and figures regarding the manuscript "2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors".

All Figures are in tiff format and all relevant data are in csv formats. 

The data in csv format are labelled as specified in the corresping images (e.g. Figure 1a csv file corresponds to data used to plot graphs from Figure 1a etc.). 

Axis labeling and units are always specified at the beginning of individual columns. If more than one curve was plotted from the csv file, the conditions can also be found at the beginning of corresponding columns.
DOI: 10.5281/zenodo.11543484
title: Dataset for 2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors

description: The dataset contains all relevant data and figures regarding the manuscript "2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors".

All Figures are in tiff format and all relevant data are in csv formats. 

The data in csv format are labelled as specified in the corresping images (e.g. Figure 1a csv file corresponds to data used to plot graphs from Figure 1a etc.). 

Axis labeling and units are always specified at the beginning of individual columns. If more than one curve was plotted from the csv file, the conditions can also be found at the beginning of corresponding columns.
DOI: 10.5281/zenodo.13897503
title: Dataset for 2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors

description: The dataset contains all relevant data and figures regarding the manuscript "2D Rhenium- and Niobium-Doped WSe2 Photoactive Cathodes in Photo-Enhanced Hybrid Zn-Ion Capacitors".

All Figures are in tiff format and all relevant data are in csv formats. 

The data in csv format are labelled as specified in the corresping images (e.g. Figure 1a csv file corresponds to data used to plot graphs from Figure 1a etc.). 

Axis labeling and units are always specified at the beginning of individual columns. If more than one curve was plotted from the csv file, the conditions can also be found at the beginning of corresponding columns.
DOI: 10.57703/ce-9epgb
title: 3D surfaces of rough steel indenters

description: Measured using a Keyence VK-X150 laser microscope, the 3D models of rough surfaces of steel indenters and their silicone impressions are provided.
Files with names in the format:

“PXXXX steel.vk4” represent the surfaces of the original indenters, where PXXXX refers to the sandpaper grit number used to create the roughness on the surface.
“PXXXX steel_approximation.mat” are approximations of the surfaces using a 16th-degree polynomial, representing smooth surfaces without roughness.
“PXXXX steel_rough_plane.mat” are the differences between “PXXXX steel.vk4” and “PXXXX steel_approximation.mat”, which represent the rough plane. Analyzing this data can provide roughness parameters.
There are four cases: P2000, P800, P320, P40, resulting in a total of 3x4 = 12 surfaces for the steel indenters.
Similar data is available for silicone impressions of the indenters surfaces, where "steel" is replaced by "silicone" in the filenames, yielding another 12 files.

In total, the Digital surface Twin contains 24 data files.

These indenters were used in experiments described in the article “Friction in adhesive contacts: Influence of roughness”, which was prepared for the journal “Machines” as invited article.
DOI: 10.15468/dl.67e7vj
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Carassius auratus (Linnaeus, 1758)"
 ]
}

 The dataset's 2 records were derived from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045565-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vhr6u
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Cichlasoma cyanoguttatum (Baird & Girard, 1854)"
 ]
}

 The dataset's 1 records were derived from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045568-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mhgck
title: Occurrence Download

description: A dataset containing 56962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Sittasomus griseicapillus (Vieillot, 1818)"
 ]
}

 The dataset includes 56962 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045577-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13897592
title: Supporting Information
DOI: 10.5281/zenodo.13897593
title: Supporting Information
DOI: 10.5281/zenodo.13773246
title: Assemblies and annotations from the paper "Interspecies hybridization as a route of accessory chromosome origin in fungal species infecting wild grasses"

description: This repository contains the whole genome assemblies, gene and TE annotations generated and analyzed in the manuscript entitled "Interspecies hybridization as a route of accessory chromosome origin in fungal species infecting wild grasses". 

Preprint available on BioRxiv:

https://www.biorxiv.org/content/10.1101/2024.10.03.616481v1
DOI: 10.5281/zenodo.13363591
title: Mountain Rain Or Snow: Enhancing Avalanche Forecasting With Real-Time Precipitation Phase Data

description: This is the MRoS dataset used for the ISSW 2024 proceeding.
DOI: 10.5281/zenodo.12743217
title: GATE simulated cylindrical PET with NEMA-like phantom

description: This is a GATE-simulated data using a cylindrical PET scanner (based on the GATE cylindrical PET example) and a NEMA-like phantom. Included are the sinograms created by OMEGA software, for both TOF and non-TOF cases as mat-files as well as normalization correction coefficients. You can open these mat-files in MATLAB, Octave, Python, Julia or in practically any other language. This data can be also used as a testing data for OMEGA. Included is also the ground truth image (i.e. the source image), attenuation image as created by GATE, as well as the original ROOT files. The ROOT file package also contains the original macros that give details on the scanner and the phantom.

The sinogram data contains several different sinograms. raw_SinM is the raw sinogram with no modifications, SinM contains normalization and randoms correction precorrected (not available for TOF data), SinDelayed contains delayed coincidences, SinTrues the trues, SinRandoms the true randoms, SinScatter the true scattered photons, appliedCorrections show the corrections applied to SinM and RandProp and ScatterProp show whether variance reduction or smoothing was applied to the delayed coincidences or (not present) scatter estimation data. The attenuation data is already correctly scaled and is saved as a MetaImage file.

Also included is the ground truth, or original source, image. This is saved as the variable C. RA is the randoms image while SC is the scatter image. The latter two are in singles mode, i.e. they show the locations of the photons that either were random (two different events) or scattered along the way.

The normalization data works for other measurements with the same scanner as long as the sinogram dimensions remain the same. OMEGA will automatically use the normalization data if it's present in the mat-files folder.

This new version includes also the detector coordinates for each measurement. This is mainly for OMEGA-example showcasing the use of custom data. See, for example, https://github.com/villekf/OMEGA/blob/master/main-files/custom_detector_exampleSimple.m
DOI: 10.5281/zenodo.12743218
title: GATE simulated cylindrical PET with NEMA-like phantom

description: This is a GATE-simulated data using a cylindrical PET scanner (based on the GATE cylindrical PET example) and a NEMA-like phantom. Included are the sinograms created by OMEGA software, for both TOF and non-TOF cases as mat-files as well as normalization correction coefficients. You can open these mat-files in MATLAB, Octave, Python, Julia or in practically any other language. This data can be also used as a testing data for OMEGA. Included is also the ground truth image (i.e. the source image), attenuation image as created by GATE, as well as the original ROOT files. The ROOT file package also contains the original macros that give details on the scanner and the phantom.

The sinogram data contains several different sinograms. raw_SinM is the raw sinogram with no modifications, SinM contains normalization and randoms correction precorrected (not available for TOF data), SinDelayed contains delayed coincidences, SinTrues the trues, SinRandoms the true randoms, SinScatter the true scattered photons, appliedCorrections show the corrections applied to SinM and RandProp and ScatterProp show whether variance reduction or smoothing was applied to the delayed coincidences or (not present) scatter estimation data. The attenuation data is already correctly scaled and is saved as a MetaImage file.

Also included is the ground truth, or original source, image. This is saved as the variable C. RA is the randoms image while SC is the scatter image. The latter two are in singles mode, i.e. they show the locations of the photons that either were random (two different events) or scattered along the way.

The normalization data works for other measurements with the same scanner as long as the sinogram dimensions remain the same. OMEGA will automatically use the normalization data if it's present in the mat-files folder.
DOI: 10.5281/zenodo.13897596
title: GATE simulated cylindrical PET with NEMA-like phantom

description: This is a GATE-simulated data using a cylindrical PET scanner (based on the GATE cylindrical PET example) and a NEMA-like phantom. Included are the sinograms created by OMEGA software, for both TOF and non-TOF cases as mat-files as well as normalization correction coefficients. You can open these mat-files in MATLAB, Octave, Python, Julia or in practically any other language. This data can be also used as a testing data for OMEGA. Included is also the ground truth image (i.e. the source image), attenuation image as created by GATE, as well as the original ROOT files. The ROOT file package also contains the original macros that give details on the scanner and the phantom.

The sinogram data contains several different sinograms. raw_SinM is the raw sinogram with no modifications, SinM contains normalization and randoms correction precorrected (not available for TOF data), SinDelayed contains delayed coincidences, SinTrues the trues, SinRandoms the true randoms, SinScatter the true scattered photons, appliedCorrections show the corrections applied to SinM and RandProp and ScatterProp show whether variance reduction or smoothing was applied to the delayed coincidences or (not present) scatter estimation data. The attenuation data is already correctly scaled and is saved as a MetaImage file.

Also included is the ground truth, or original source, image. This is saved as the variable C. RA is the randoms image while SC is the scatter image. The latter two are in singles mode, i.e. they show the locations of the photons that either were random (two different events) or scattered along the way.

The normalization data works for other measurements with the same scanner as long as the sinogram dimensions remain the same. OMEGA will automatically use the normalization data if it's present in the mat-files folder.

This new version includes also the detector coordinates for each measurement. This is mainly for OMEGA-example showcasing the use of custom data. See, for example, https://github.com/villekf/OMEGA/blob/master/main-files/custom_detector_exampleSimple.m
DOI: 10.57967/hf/2738
title: mdCATH
DOI: 10.5281/zenodo.13886904
title: Heiduk et al_Rocksitter flies_Ceropegia pulchellior

description: Raw data for Heiduk et al. "Rocksitter-flies (Lauxaniidae: Cestrotus) are key pollinators of Ceropegia pulchellior - a threatened and localized South African endemic with foetid-scented flowers" to be published in the Journal of Applied Entomology, Special Issue titled "The neglected Pollinators: Understanding the Importance of Lesser-Known Taxa in Pollination".
DOI: 10.5281/zenodo.13886905
title: Heiduk et al_Rocksitter flies_Ceropegia pulchellior

description: Raw data for Heiduk et al. "Rocksitter-flies (Lauxaniidae: Cestrotus) are key pollinators of Ceropegia pulchellior - a threatened and localized South African endemic with foetid-scented flowers" to be published in the Journal of Applied Entomology, Special Issue titled "The neglected Pollinators: Understanding the Importance of Lesser-Known Taxa in Pollination".
DOI: 10.5281/zenodo.13897635
title: Code
DOI: 10.5281/zenodo.13897636
title: Code
DOI: 10.15468/dl.52mspd
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goniurosaurus luii Grismer, Viets & Boyle, 1999"
 ]
}

 The dataset includes 57 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045581-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13897639
title: Dataset Coded transcript Student Mobility and Career Advancement

description: Dataset Transcript Student Mobility and Career Advancement
DOI: 10.5281/zenodo.13897640
title: Dataset Coded transcript Student Mobility and Career Advancement

description: Dataset Transcript Student Mobility and Career Advancement