cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dv41ns21d
title: Endogenous rhythm shift and adaptation to the tidal environment in the freshwater snail

description: Organisms have an endogenous timekeeping system to coordinate their
 biological processes with environmental cycles, allowing adaptation to
 external rhythmic changes in their environment. Modification of biological
 clocks could contribute to range expansion in a novel rhythmic
 environment. We hypothesized that populations of freshwater species near
 estuaries have acquired a circatidal rhythm to synchronize with the tidal
 cycle. Here, we compared the locomotion activity and gene expression
 rhythms of the freshwater snail Semisulcospira reiniana between
 individuals inhabiting freshwater and brackish-water areas. Individuals
 inhabiting brackish-water areas exhibited a rhythmic activity pattern
 coordinated with the tidal cycle under both field and laboratory
 conditions. Individuals inhabiting upstream freshwater areas showed a
 nocturnal activity pattern. The proportion of circadian oscillating genes
 was greater in freshwater than in brackish-water individuals, while that
 of circatidal oscillating genes was greater in brackish-water than in
 freshwater individuals. Interestingly, expression of 16 genes exhibited
 circadian and circatidal rhythms in freshwater and brackish-water
 individuals, respectively. Additionally, transcriptome-wide population
 genetic analyses supported our assumption that these two populations are
 genetically almost identical. These findings suggest that the slight
 divergence contributed to the shift in the timekeeping system, and that
 endogenous rhythms could differ in their periods between freshwater and
 brackish-water populations. Our results provide evidence of the evolution
 of endogenous rhythm via range expansion to novel rhythmic environment in
 a single species.
DOI: 10.5061/dryad.x0k6djhn0
title: Data from: Using ultraconserved elements to reconstruct the termite tree of life

description: The phylogenetic history of termites has been investigated using
 mitochondrial genomes and transcriptomes. However, both sets of markers
 have specific limitations. Mitochondrial genomes represent a single
 genetic marker likely to yield phylogenetic trees presenting incongruences
 with species trees, and transcriptomes can only be obtained from
 well-preserved samples. In contrast, ultraconserved elements (UCEs)
 include a great many independent markers that can be retrieved from poorly
 preserved samples. Here, we designed termite-specific baits
 targeting 50,616 UCE loci. We tested our UCE bait set on
 42 samples of termites and three samples of Cryptocercus, for
 which we generated low-coverage highly-fragmented genome assemblies and
 successfully extracted in silico between 3,426 to 42,860
 non-duplicated UCEs per sample. Our maximum likelihood phylogenetic tree,
 reconstructed using the 5,934 UCE loci retrieved from upward of 75% of
 samples, was congruent with transcriptome-based phylogenies, demonstrating
 that our UCE bait set is reliable and phylogenetically informative.
 Combined with non-destructive DNA extraction protocols, our UCE bait set
 provides the tool needed to carry out a global taxonomic revision of
 termites based on poorly preserved specimens such as old museum samples.
 The Termite UCE database is maintained
 at: https://github.com/oist/TER-UCE-DB/.
DOI: 10.7910/dvn/gsbevf
title: Subtype-specific neutralizing antibodies promote antigenic shift during influenza virus co-infection

description: The conundrum of how pre-existing humoral immunity orchestrates the emergence of novel viral strains via reassortment remains a enigma. Our study elucidated the intricate dynamics by which strain-specific and broadly reactive antibodies interact to modulate the genetic diversity and evolutionary paradigm of influenza viruses.
DOI: 10.5061/dryad.jh9w0vtdr
title: Adipose-derived stromal cells preserve pancreatic islet function in a transplantable 3D bioprinted scaffold

description: Intra-portal islet transplantation is the method of choice for treatment
 of insulin dependent type 1 diabetes, but its outcome is hindered by
 limited islet survival due to the immunological and metabolic stress post
 transplantation. Adipose-derived stromal cells (ASCs) promise to improve
 significantly the islet micro-environment but an efficient long-term
 delivery method has not been achieved. We therefore explore the potential
 of generating ASC enriched islet transplant structure by 3D bioprinting.
 Here, we fabricate a double-layered 3D bioprinted scaffold for islets and
 ASCs by using alginate-nanofibrillated cellulose bioink. We demonstrate
 the diffusion properties of the scaffold and report that human ASCs
 increase the islet viability, preserve the endocrine function, and reduce
 pro-inflammatory cytokines secretion in vitro. Intraperitoneal
 implantation of the ASCs and islets in 3D bioprinted scaffold improve the
 long-term function of islets in diabetic mice. Our data reveals an
 important role for ASCs on the islet micro-environment. We suggest a novel
 cell therapy approach of ASCs combined with islets in a 3D structure with
 a potential for clinical beta cell replacement therapies at extrahepatic
 sites.
description: The dataset was collected using human and mouse primary islets
 and human adipose-derived stromal cells (ASCs). All experiments using
 human materials were approved by and performed in accordance with the
 guidelines and regulations made by the regional committee for medical and
 health research ethics central in Norway. The animal experiments were
 approved by the Norwegian National Animal Research Authority and performed
 according to the Guide for the Care and
 Use of Laboratory Animals published by the US National Institutes of
 Health, and to the Norwegian Animal Welfare Act ( more detailed
 information can be found in the manuscript file).
 After generating 3D bioprinted
 scaffolds for human or mouse islets with or withour human ASCs, in vitro
 and in vivo analysis were performed on the scaffolds to investigate the
 function of the cells after printing. For in vitro analysis, we performed
 glucose stimulated insulin secretion test, viability analysis and
 measurement of pro-inflammatory cytokines secreted by the cells in
 scaffolds.  For in vivo analysis, we transplanted scaffolds
 at the intraperitoneal site of a diabetic mouse model to follow the
 function of scaffolds post transplantation.
DOI: 10.5061/dryad.5x69p8d5r
title: Biomimetic robotic skin implemented with hydrogel-elastomer hybrids and tomographic imaging methods

description: Human skin perceives physical stimuli applied to the body and mitigates
 the risk of physical interaction through its soft and resilient mechanical
 properties. Social robots would benefit from whole-body robotic skin (or
 tactile sensors) resembling human skin in realizing a safe, intuitive, and
 contact-rich interaction with humans. However, existing soft tactile
 sensors show several drawbacks (complex structure, poor scalability, and
 fragility), which limit their application in whole-body robotic skin.
 Here, we introduce biomimetic robotic skin based on hydrogel-elastomer
 hybrids and tomographic imaging. The developed skin consists of tough
 hydrogel and silicone elastomer forming a skin-inspired multilayer
 structure, achieving sufficient softness and resilience for protection.
 The sensor structure can also be easily repaired with adhesives even after
 severe damage (incision). For multimodal tactile sensation, electrodes and
 microphones are deployed in the sensor structure to measure local
 resistance changes and vibration due to touch. The ionic hydrogel layer is
 deformed due to an external force, and the resulting local conductivity
 changes are measured via electrodes. The microphones also detect the
 vibration generated from touch to determine the location and type of
 dynamic tactile stimuli. The measurement data are then converted into
 multimodal tactile information through tomographic imaging and deep neural
 networks. We further implement a sensorized cosmetic prosthesis,
 demonstrating that our design could be used to implement deformable or
 complex-shaped robotic skin.
description: 1. Code and simulation data used to train the neural network for
 electrical impedance tomography 2. Code and vibration
 data used to train the neural network for touch classification
DOI: 10.5061/dryad.d7wm37q3r
title: Sexual dimorphism of the gut microbiota in the Chinese alligator and its convergence in the wild environment

description: The gut microbiota forms a complex microecosystem in vertebrates and is
 affected by various factors. As a key intrinsic factor, sex has a
 persistent impact on the formation and development of gut microbiota. Few
 studies have analysed sexual dimorphism of gut microbiota, particularly in
 wild animals. We used 16S rRNA sequencing to analyse the gut microbiota of
 juvenile and adult Chinese alligators, and untargeted metabolomics to
 study serum metabolomes of adult alligators. We observed significant
 sex-biased differences in the community diversity in juvenile, but not
 adult, alligators. In terms of taxonomic composition, the phylum
 Fusobacteriota and genus Cetobacterium were highly abundant in adult
 alligators, similar to that in carnivorous fishes, whereas the gut
 microbiota composition in juvenile alligators resembled that in
 terrestrial reptiles, indicating that adults are affected by their wild
 aquatic environment and lack sex dimorphism in gut microbiota. The
 correlation analysis revealed that the gut microbiota of adults was also
 affected by cyanobacteria in the external environment, and this effect was
 sex-biased and mediated by sex hormones. Overall, this study reveals
 sexual differences in the gut microbiota of crocodilians and their
 convergence in the external environment. It also provides insights into
 host-microbiota interactions in the wild.
DOI: 10.5281/zenodo.18252613
title: TExTra Test Data and Tool Dependencies

description: The dataset is intended for demonstration, testing, and validation purposes only, and enables users to verify the correct installation and execution of the TExTra workflow. It is designed to work seamlessly with the example scripts and default parameters provided in the TExTra documentation.

The dataset includes:





Paired-end RNA-seq BAM files representing simulated mouse heart developmental samples.




Reverse-stranded (rf) library layout, suitable for strandedness-specific analyses.




Reference genome annotation (GTF): Gencode vM21 primary assembly annotations.




Transposable element (TE) annotation (GTF): RepeatMasker-based TE annotations for mouse.




Reference genome FASTA file: GRCm38 primary assembly.




Tool packages:





TACO v0.7.3 (taco-v0.7.3.Linux_x86_64.tar.gz) for transcriptome assembly and merging.




PLEK v2 (PLEKv2_allfiles_240807.tar.gz) for lncRNA prediction.







Note: TACO and PLEK can be downloaded directly and used after extraction in the util/ directory without requiring additional downloads.


All files are ready to use and compatible with the default workflows and example pipelines described in the TExTra documentation, allowing users to quickly test and validate the software installation and computational workflow.
DOI: 10.5281/zenodo.18252614
title: TExTra Test Data and Tool Dependencies

description: The dataset is intended for demonstration, testing, and validation purposes only, and enables users to verify the correct installation and execution of the TExTra workflow. It is designed to work seamlessly with the example scripts and default parameters provided in the TExTra documentation.

The dataset includes:





Paired-end RNA-seq BAM files representing simulated mouse heart developmental samples.




Reverse-stranded (rf) library layout, suitable for strandedness-specific analyses.




Reference genome annotation (GTF): Gencode vM21 primary assembly annotations.




Transposable element (TE) annotation (GTF): RepeatMasker-based TE annotations for mouse.




Reference genome FASTA file: GRCm38 primary assembly.




Tool packages:





TACO v0.7.3 (taco-v0.7.3.Linux_x86_64.tar.gz) for transcriptome assembly and merging.




PLEK v2 (PLEKv2_allfiles_240807.tar.gz) for lncRNA prediction.







Note: TACO and PLEK can be downloaded directly and used after extraction in the util/ directory without requiring additional downloads.


All files are ready to use and compatible with the default workflows and example pipelines described in the TExTra documentation, allowing users to quickly test and validate the software installation and computational workflow.
DOI: 10.15468/dl.xaeprq
title: Occurrence Download

description: A dataset containing 5136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, 28eb1a3f-1c15-4a95-931a-4af90ecb574d)",
 "TaxonKey is Cornu aspersum",
 "Year 1000-2023"
 ]
}

 The dataset includes 5136 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003128-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.280gb5mrx
title: Growth resilience of conifer species decreases with early, long-lasting and intense droughts but cannot be explained by hydraulic traits

description: Drought events may reduce growth and survival of conifer trees. The
 effects of the intensity and timing of drought on the growth resilience,
 including growth reductions during drought and recovery of growth after
 drought, remains however highly uncertain. Growth resilience of 20 conifer
 species to 11 dry years was compared in a common garden experiment. We
 assessed 1) the relationships among growth resistance, recovery and
 resilience, 2) the impacts of different drought dimensions (intensity,
 onset and length) on resistance, and 3) the underlying mechanisms in terms
 of growth potential and hydraulic traits. Droughts led to 22% reduction in
 stem growth for 85% of species, but most species (85%) were resilient due
 to high recovery. Growth resistance decreased with an early onset of
 drought (significant for 55% of species), and longer lasting (35%) and
 intense droughts (60%). While fast-growing species and slow-growing
 species were similar in resistance and recovery, fast-growing species were
 more resilient. Unexpectedly, resilience could not be explained by
 hydraulic traits, possibly because the species grew on poor sandy soils
 and were acclimated to drought with large hydraulic safety margins.
 Synthesis Our study shows that in a mild maritime climate almost all
 conifer species are resilient to drought, and that putative hydraulic
 traits may be less important here for growth resilience. It also
 highlights the importance of addressing multiple dimensions of drought,
 i.e., timing, duration and severity, to predict species responses to
 climate change.
DOI: 10.5061/dryad.bk3j9kdfk
title: Temporal and spatial changes in benthic invertebrate trophic networks along a taxonomic richness gradient

description: Species interactions underlie most ecosystem functions and are important
 for understanding ecosystem changes. Representing one type of species
 interaction, trophic networks were constructed from biodiversity
 monitoring data and known trophic links to assess how ecosystems have
 changed over time. The Baltic Sea is subject to many anthropogenic
 pressures, and low species diversity makes it an ideal candidate for
 determining how pressures change food webs. In this study, we used benthic
 monitoring data from 20 years (1980-1989 and 2010-2019) from the Swedish
 coast of the Baltic Sea and Skagerrak to investigate changes in benthic
 invertebrate trophic interactions. We constructed food webs and calculated
 fundamental food web metrics evaluating network horizontal and vertical
 diversity, as well as stability that were compared over space and time.
 Our results show that the west coast of Sweden (Skagerrak) suffered a
 reduction in benthic invertebrate biodiversity by 32 % between the 1980’s
 and 2010’s, and that the number of links, generality of predators, and
 vulnerability of prey, have been significantly reduced. The other basins
 (Bothnian Sea, Baltic Proper and Bornholm Basin) do not show any
 significant changes in species richness or consistent significant trends
 in any food web metrics investigated, demonstrating resilience at a lower
 species diversity. The decreased complexity of the Skagerrak food webs
 indicates vulnerability to further perturbations and pressures should be
 limited as much as possible to ensure continued ecosystem functions.
description: Swedish national monitoring of macrofauna data from the public
 Swedish Hydrological and Meterological Institute (SMHI) SharkWeb (https://sharkweb.smhi.se/hamta-data/). Known literature feeding link references provided within.
DOI: 10.15468/dl.smez8j
title: Occurrence Download

description: A dataset containing 2451041778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 2451041778 records from 26405 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003051-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrmczr
title: Occurrence Download

description: A dataset containing 582 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Forest biotopes of the National Nature Park “Svyati Hory”, locations of individual species from forest and steppe communities"
 ]
}

 The dataset includes 582 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049612-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnkx3h
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudoscorpiones",
 "Year 1999-2001",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 537 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049613-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdrnux
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Nepal, Bangladesh, Pakistan, Bhutan, Afghanistan, Myanmar)",
 "TaxonKey is Charana"
 ]
}

 The dataset includes 37 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049614-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.20610.95689
title: POWER OF A POINT β IN CIRCLE DOES NOT COMPLY WITH THE RELEVANT HYPERBOLIC FUNCTION FOR SOLUTION, BASED ON Pi = 3 141592654 introducing Δx and Δy errors By Panagiotis stefanides
DOI: 10.15468/dl.phut3x
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Revision of the genus Dilophus Meigen, 1803 (Diptera, Bibionidae) from the Afrotropical Ecozone"
 ]
}

 The dataset includes 173 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009450-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke6e5b
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Edmondia sesamoides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 364 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009452-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzhv7b
title: Occurrence Download

description: A dataset containing 630746 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oryza"
 ]
}

 The dataset includes 630746 records from 671 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009379-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chscjd
title: Occurrence Download

description: A dataset containing 83333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrgus malvae"
 ]
}

 The dataset includes 83333 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009427-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sptfeu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Abelmoschus moschatus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009453-260120142942310/datasets/export for details.
DOI: 10.15468/dl.ggvjwy
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Haplothrips tritici"
 ]
}

 The dataset includes 141 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009454-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncqkba
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Edmondia splendens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009458-260120142942310/datasets/export for details.
DOI: 10.34740/kaggle/dsv/14604129
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18360989
title: Dataset Questionnaire Humanizing the Algorithm: The Role of Emotional Response in AI Influencer and Consumer Purchase Behavior

description: This dataset contains respondents' answers Social Media, AI Influencer, e-WOM
DOI: 10.5281/zenodo.18360990
title: Dataset Questionnaire Humanizing the Algorithm: The Role of Emotional Response in AI Influencer and Consumer Purchase Behavior

description: This dataset contains respondents' answers Social Media, AI Influencer, e-WOM
DOI: 10.15468/dl.8ece46
title: Occurrence Download

description: A dataset containing 375783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vespa velutina"
 ]
}

 The dataset includes 375783 records from 887 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009428-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.