cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/l30-7q6-770
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2l1-mdy-kkb
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q01-8ry-z8p
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6pa-s5q-32x
title: †Beisselina Canu, 1913

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7uz74x
title: Occurrence Download

description: A dataset containing 1451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1451 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023711-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9lz-wl9-wsy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9vw-yjd-n9c
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2m0-v23-dba
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z8m-bnj-4re
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4vd-s41-621
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/26241
title: Chandra X-ray Observatory ObsId 26241

description: X-ray jets in hard X-ray selected Giant Radio Galaxies
DOI: 10.3535/0rr-kmv-fpw
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n9d-xdq-sl9
title: Olcostephanus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1e8-lzv-k13
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/blw-7r5-fj3
title: Micromys Dehne, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.crb29u
title: Occurrence Download

description: A dataset containing 2038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2038 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023712-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/v7f-pde-78c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/26242
title: Chandra X-ray Observatory ObsId 26242

description: X-rays from a Unique Spun-up Post Mass Transfer Main Sequence Carbon Star
DOI: 10.3535/c05-bll-pss
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s06-gd7-t7c
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ebh-200-2az
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tbw-1wl-a8w
title: †Pustulopora pustulosa (Goldfuss, 1827)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kyv-vkc-fdv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mda-w9e-5nr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.mae2cu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Tajikistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023713-250811113504898/datasets/export for details.
DOI: 10.25574/26243
title: Chandra X-ray Observatory ObsId 26243

description: Understanding Quasar Jet Physics in the X-rays
DOI: 10.3535/21b-ny7-z1x
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9a3-838-063
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/66k-tqn-b7s
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j94-ceg-3gv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.14288/1.0397937
title: Selection on a small genomic region underpins differentiation in multiple color traits between two warbler species

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Speciation is one of the most important processes in biology, yet the study of the genomic changes underlying this process is in its infancy. North American warbler species &lt;i&gt;Setophaga townsendi&lt;/i&gt; and &lt;i&gt;S. occidentalis&lt;/i&gt; hybridize in a stable hybrid zone, following a period of geographic separation. Genomic differentiation accumulated during geographic isolation can be homogenized by introgression at secondary contact, while genetic regions that cause low hybrid fitness can be shielded from such introgression. Here we examined the genomic underpinning of speciation by investigating: (1) the genetic basis of divergent pigmentation traits between species, (2) variation in differentiation across the genome, and (3) the evidence for selection maintaining differentiation in the pigmentation genes. Using tens of thousands of single nucleotide polymorphisms (SNPs) genotyped in hundreds of individuals within and near the hybrid zone, genome-wide association mapping revealed a single SNP associated with cheek, crown, breast coloration, and flank streaking, reflecting pleiotropy (one gene affecting multiple traits) or close physical linkage of different genes affecting different traits. This SNP is within an intron of the RALY gene, hence we refer to it as the RALY SNP. We then examined between-species genomic differentiation, using both genotyping-by-sequencing and whole genome sequencing. We found that the RALY SNP is within one of the highest peaks of differentiation, which contains three genes known to influence pigmentation: ASIP, EIF2S2, and RALY (the ASIP-RALY gene block). Heterozygotes at this gene block are likely of reduced fitness, as the geographic cline of the RALY SNP has been narrow over two decades. Together, these results reflect at least one barrier to gene flow within this narrow (~200kb) genomic region that modulates plumage difference between species. Despite extensive gene flow between species across the genome, this study provides evidence that selection on a phenotype-associated genomic region maintains a stable species boundary. &lt;/p&gt;
DOI: 10.14288/1.0397899
title: Temporal instability of lake charr phenotypes: Synchronicity of growth rates and morphology linked to environmental variables?

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="text-align:justify;text-indent:.5in;margin-bottom:11px;"&gt;Pathways through which phenotypic variation among individuals arise can be complex. One assumption often made in relation to intraspecific diversity is that the stability or predictability of the environment will interact with expression of the underlying phenotypic variation. &lt;span style="background:white;"&gt;To address&lt;/span&gt; biological complexity below the species level&lt;span style="background:white;"&gt;, we investigated variability across years in morphology and annual growth increments between and within two sympatric lake charr &lt;i&gt;Salvelinus namaycush&lt;/i&gt; ecotypes in Rush Lake, USA. &lt;/span&gt;A rapid phenotypic shift in body and head shape was found within a decade. The magnitude and direction of the observed phenotypic change was consistent in both ecotypes, which suggests similar pathways caused the variation over time. Over the same time period, annual growth increments declined for both lake charr ecotypes and corresponded with a consistent phenotypic shift of each ecotype. Despite ecotype-specific annual growth changes in response to winter conditions, the observed annual growth shift for both ecotypes was linked, to some degree, with variation in the environment. Particularly, a declining trend in regional cloud cover was associated with an increase of early stage (ages 1-3) annual growth for lake charr of Rush Lake. Underlying mechanisms causing changes in growth rates and constrained morphological modulation are not fully understood. An improved knowledge of the biology hidden within the expression of phenotypic variation promises to clarify our understanding of temporal morphological diversity and instability.&lt;/p&gt;
DOI: 10.14288/1.0397878
title: Data from: The molecular phylogeny of Chionaster nivalis reveals a novel order of psychrophilic and globally distributed Tremellomycetes (Fungi, Basidiomycota)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="margin-bottom:11px;"&gt;Snow and ice present challenging substrates for cellular growth, yet microbial snow communities not only exist, but are diverse and ecologically impactful. These communities are dominated by green algae, but additional organisms, such as fungi, are also abundant and may be important for nutrient cycling, syntrophic interactions, and community structure in general. However, little is known about these non-algal community members, including their taxonomic affiliations. An example of this is &lt;i&gt;Chionaster nivalis&lt;/i&gt;, a unicellular fungus that is morphologically enigmatic and frequently observed in snow communities globally. Despite being described over one hundred years ago, the phylogeny and higher-level taxonomic classifications of &lt;i&gt;C. nivalis&lt;/i&gt; remain unknown. Here, we isolated and sequenced the internal transcribed spacer (ITS) and the D1-D2 region of the large subunit ribosomal RNA gene of &lt;i&gt;C. nivalis&lt;/i&gt;,&lt;i&gt; &lt;/i&gt;providing a molecular barcode for future studies. Phylogenetic analyses using the ITS and D1-D2 region revealed that &lt;i&gt;C. nivalis&lt;/i&gt; is part of a novel lineage in the class Tremelomycetes (Basidiomycota, Agaricomycotina) for which a new order, Chionasterales ord. nov. (MB838717), and family, Chionasteraceae fam. nov. (MB838718), are proposed. Comparisons between &lt;i&gt;C. nivalis&lt;/i&gt; and sequences generated from environmental surveys revealed that the Chionasterales are globally distributed and probably psychrophilic, as they appear to be limited to the high alpine and arctic regions. These results highlight the unexplored diversity that exists within these extreme habitats and emphasize the utility of single-cell approaches in characterizing these complex algal-dominated communities.&lt;/p&gt;
DOI: 10.15468/dl.jk8hsr
title: Occurrence Download

description: A dataset containing 63398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colaptes auratus (Linnaeus, 1758)",
 "Year 1960-1979"
 ]
}

 The dataset includes 63398 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000464-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0397536
title: Human-induced reduction in mammalian movements impacts seed dispersal in the tropics

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Seed dispersal is a key process affecting the structure, composition and spatial dynamics of plant populations. Numerous plant species in the tropics rely upon animals to disperse their seeds. Humans have altered mammalian movements, which will likely affect seed dispersal distances (SDD). Altered SDD may have a range of consequences for plant communities including reduced seedling recruitment and plant biomass, seed trait homogenization, altered gene flow and a reduced capacity to respond to environmental changes. Therefore, modelling the consequences of altered animal behaviour on ecosystem processes is important for predicting how ecosystems will respond to human impacts. While previous research has focused on the link between animal species extirpation and SDD, it remains unclear how changes in mammalian movement will impact SDD. Here we implemented a mechanistic modelling approach to examine how mammalian movement reductions impact SDD in the tropics. We combined allometric theory with a mechanistic seed dispersal model to estimate SDD via the movement of 37 large frugivorous mammals (&gt; 10 kg) in the tropics under different levels of human footprint, a global proxy of direct and indirect human disturbances. Our results suggest that assemblage-level SDD reductions are estimated to be up to 80% across the tropics in response to human disturbance. This is particularly the case in areas with high human impact such as agricultural landscapes and suburban areas. The region with the largest reductions in SDD was the Asia-Pacific with average reductions of 25%, followed by Central-South America (16%) and then Africa (15%). Our study provides insights into how human-induced changes in movement behaviour of large mammals could translate into altered ecosystem functioning.
DOI: 10.14288/1.0397597
title: Clinician-researcher’s perspectives on clinical research during the COVID-19 pandemic

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;title&gt;Objectives:&lt;/title&gt; &lt;p&gt;The outcome of well-performed clinical research is essential for evidence-based patient management during pandemics. However, conducting clinical research amidst a pandemic requires researchers to balance clinical and research demands. We seek to understand the values, experiences, and beliefs of physicians working at the onset of the COVID-19 pandemic in order to inform clinical research planning. We aim to understand whether pandemic settings affect physician comfort with research practices, and how physician experiences shape their understanding of research in a pandemic setting.&lt;/p&gt; &lt;p&gt; &lt;title&gt;Methods:&lt;/title&gt; &lt;p&gt;A survey tool was adapted to evaluate familiarity and comfort with research during a pandemic. A cross-sectional, online questionnaire was distributed across Canadian research networks early in the COVID-19 outbreak. The survey was administered between March 11&lt;sup&gt;th&lt;/sup&gt; and 17&lt;sup&gt;th&lt;/sup&gt;, 2020, during a time of local transmission but prior to the surge of cases. We aimed to recruit into the survey physicians in infectious disease and critical care research networks across Canada.&lt;/p&gt; &lt;/p&gt; &lt;p&gt;&lt;title&gt;Results:&lt;/title&gt; &lt;p&gt;Of the 133 physician respondents, 131 (98%) considered it important to conduct clinical research during the COVID-19 pandemic. Respondents were more accepting of adaptations to the research process during a pandemic compared to in a non-pandemic setting, including conducting research with deferred consent (χ&lt;sup&gt;2&lt;/sup&gt; = 8.941, 95% CI: -0.264, -0.085, p = 0.003), using non-identifiable observational data with a waiver of consent with a median score of 97 out of 100 (IQR: 79.25–100) vs median 87 out of 100 (IQR: 63–79) (95% CI: -12.43, 0.054, p = 0.052). The majority felt that research quality is not compromised during pandemics.&lt;/p&gt; &lt;/p&gt; &lt;p&gt; &lt;title&gt;Conclusions:&lt;/title&gt; &lt;p&gt;Physicians consider it important to conduct research during a pandemic, highlighting the need to expedite research activities in pandemic settings. Respondents were more accepting of adaptations to the research process for research conducted during a pandemic, compared to that conducted in its absence of a pandemic.&lt;/p&gt; &lt;/p&gt;
DOI: 10.14288/1.0397853
title: Data and code for: Infected juvenile salmon can experience increased predation during freshwater migration

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;This submission constitutes the data and code for the manuscript titled "Infected juvenile salmon can experience increased predation during freshwater migration" submitted by Furey et al. It includes R code for conducting analyses, a custom-built R package (authored by Bass) for conducting analyses, data files, R objects for predicting fish lengths, and sample metadata on juvenile sockeye salmon smolts that were sampled. Please see the file "DryadData_titles_and_captions_RSOS_Furey_et_al" for list of file names included. &lt;/p&gt;
DOI: 10.14288/1.0397876
title: Data from: Global origins of invasive brown rats (Rattus norvegicus) in the Haida Gwaii archipelago

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Brown rats (&lt;i&gt;Rattus norvegicus&lt;/i&gt;) have commensally spread from northern China and Mongolia to become among the most invasive species on the planet. Understanding the proximate source(s) of invasion can inform biosecurity plans and eradication strategies for preventing or mitigating impacts to native biodiversity. The Haida Gwaii archipelago, located off the coast of British Columbia, Canada, is a significant nesting site for 1.5 million seabirds across 12 species, half of which are now threatened by brown rats. Local knowledge points to a European origin in the late 1800’s to early 1900’s, though the true source(s) and firm date(s) of invasion remain unknown. To fill these knowledge gaps, we analyzed genotypic data (16,598 SNPs) for 280 brown rats sampled throughout Haida Gwaii relative to a published global database of potential source populations. Principle component analysis and population assignment tests supported multiple potential invasion sources from Europe and North America. Likewise, demographic modelling best supported two invasions into the islands. The first invasion likely occurred in the early 1900’s into the south-central archipelago from Western Europe followed by a more recent invasion in the early 2000’s from Vancouver, British Columbia, into northern Haida Gwaii. The northern invasion of Haida Gwaii could also be indicative of contemporary gene flow between Haida Gwaii and the mainland, representing a significant biosecurity risk. Our results will inform management strategies for invasive rats in Haida Gwaii, and serve as a guide for studies in other isolated systems worldwide.&lt;/p&gt;
DOI: 10.14288/1.0398117
title: Season-specific survival rates and densities of coastal cutthroat trout across stream sizes in southwestern British Columbia

description: A year-long mark-recapture study of coastal cutthroat trout in small streams near Vancouver, BC. Trout were sampled four times to provide three estimates of survival and growth rates, and four estimates of density. The best predictor of survival rate was average residual depth of pools during low-flow periods (summer).
DOI: 10.14288/1.0396378
title: Replication Data for: Characterization of cognitive-motor function in women who have experienced intimate partner violence-related brain injury

description: Intimate partner violence (IPV) affects at least 1 in 3 women worldwide and up to 92% report symptoms consistent with brain injury (BI). Although a handful of studies have examined different aspects of brain structure and function in this population, none has characterized potential deficits in cognitive-motor function. This knowledge gap was addressed in the current study by having participants who had experienced IPV complete the bimanual Object Hit & Avoid (OHA) task on a Kinarm End-Point Lab. BI load, PTSD, anxiety, depression, substance use, and history of abuse were also assessed. A stepwise multiple regression was undertaken to explore the relationship between BI load and task performance while accounting for comorbid psychopathologies. Results demonstrated BI load accounted for a significant amount of variability in the number of targets hit and average hand speed. PTSD, anxiety, and depression also contributed significantly to the variability in these measures as well as to the number and proportion of distractor hits, and the object processing rate. Taken together, these findings suggest IPV-related BI, as well as comorbid PTSD, anxiety, and depression, disrupt the processing required to quickly and accurately hit targets while avoiding distractors. This pattern of results reflects the complex interaction between the physical injuries induced by the episodes of IPV and the resulting impacts these experiences have on mental health.
DOI: 10.14288/1.0397783
title: The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Floral plantings are promoted to foster ecological intensification of agriculture through provisioning of ecosystem services. However, a comprehensive assessment of the effectiveness of different floral plantings, their characteristics and consequences for crop yield is lacking. Here we quantified the impacts of flower strips and hedgerows on pest control (18 studies) and pollination services (17 studies) in adjacent crops in North America, Europe and New Zealand. Flower strips, but not hedgerows, enhanced pest control services in adjacent fields by 16% on average. However, effects on crop pollination and yield were more variable. Our synthesis identifies several important drivers of variability in effectiveness of plantings: pollination services declined exponentially with distance from plantings, and perennial and older flower strips with higher flowering plant diversity enhanced pollination more effectively. These findings provide promising pathways to optimize floral plantings to more effectively contribute to ecosystem service delivery and ecological intensification of agriculture in the future.
DOI: 10.15468/dl.d2ds8v
title: Occurrence Download

description: A dataset containing 575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prosthechea radiata (Lindl.) W.E.Higgins"
 ]
}

 The dataset includes 575 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000474-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.