cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh671203.07fu
title: SH671203.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1190509.08fu
title: SH1190509.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.34740/kaggle/dsv/5974333
title: Physical Activity Prediction Dataset
DOI: 10.5281/zenodo.8057783
title: Land-Locked Convection as a Barrier to MJO Propagation across the Maritime Continent

description: This dataset contains the subset model output variables that were used to derive the results presented in the following publication: Savarin, A. & S. S. Chen (2023): Land-Locked Convection as a Barrier to MJO Propagation across the Maritime Continent. <em>Journal of Advances in Modeling Earth Systems</em>, 15, e2022MS003503. https://doi.org/10.1029/2022MS003503 For the sake of saving space, the model output variables (file names starting with <em>uwincm_</em>) are separated into 2D fields (latitude, longitude, land mask, precipitation, and surface zonal winds) for the duration of model simulation and 3D fields (pressure, temperature, and 3D winds) for selected times used in the manuscript. Additionally, results of large-scale precipitation tracking for MJO are stored in the file names that begin with <em>lpt_. </em> HYCOM (ocean model) bathymetry and surface temperature for initial conditions are stored in <em>HYCOM_IC_</em> files.
DOI: 10.5281/zenodo.8057782
title: Land-Locked Convection as a Barrier to MJO Propagation across the Maritime Continent

description: This dataset contains the subset model output variables that were used to derive the results presented in the following publication: Savarin, A. & S. S. Chen (2023): Land-Locked Convection as a Barrier to MJO Propagation across the Maritime Continent. <em>Journal of Advances in Modeling Earth Systems</em>, 15, e2022MS003503. https://doi.org/10.1029/2022MS003503 For the sake of saving space, the model output variables (file names starting with <em>uwincm_</em>) are separated into 2D fields (latitude, longitude, land mask, precipitation, and surface zonal winds) for the duration of model simulation and 3D fields (pressure, temperature, and 3D winds) for selected times used in the manuscript. Additionally, results of large-scale precipitation tracking for MJO are stored in the file names that begin with <em>lpt_. </em> HYCOM (ocean model) bathymetry and surface temperature for initial conditions are stored in <em>HYCOM_IC_</em> files.
DOI: 10.6084/m9.figshare.23542389.v1
title: ASAP3-Kv Hc PV interneurons 1p TIFFs

description: ASAP3-Kv Hc PV interneurons 1p TIFFs, from Evans et al., "A positively tuned voltage indicator for extended electrical recordings in the brain", Nature Methods, 2023 (https://doi.org/10.1038/s41592-023-01913-z)
DOI: 10.5281/zenodo.8057902
title: Global coastal flood maps

description: Global coastal flood maps for the present day 100-year event.
DOI: 10.5281/zenodo.8057901
title: Global coastal flood maps

description: Global coastal flood maps for the present day 100-year event.
DOI: 10.3886/e154721v1-139586
title: Investigating the impact of at-home learning on secondary school aged children with ADHD: a qualitative study.

description: Students with ADHD can benefit from at-home learning in terms of managing their symptoms, however lockdown restrictions due to the pandemic are having negative impacts on the student population. This study was designed to ascertain how students with ADHD have been impacted by at-home learning under lockdown restrictions. An interpretative phenomenological analysis was conducted using semi-structured interviews from students, parents and teaching staff. These interviews were used to identify three main themes (anxiety caused by at-home learning, change in social interaction and academic impact of at-home learning) that best identified the participants experiences. The results suggested that whilst supportive home environments helped students with ADHD to better manage their symptoms, social anxiety was a significant problem and not all schools allowed students with ADHD to take full advantage of at-home learning for their students with ADHD.
description: Secondary School age children who experienced at-home learning during the lockdown of the Covid pandemic in 2020/2021.
DOI: 10.3886/e154721v1-139587
title: Investigating the impact of at-home learning on secondary school aged children with ADHD: a qualitative study.

description: Students with ADHD can benefit from at-home learning in terms of managing their symptoms, however lockdown restrictions due to the pandemic are having negative impacts on the student population. This study was designed to ascertain how students with ADHD have been impacted by at-home learning under lockdown restrictions. An interpretative phenomenological analysis was conducted using semi-structured interviews from students, parents and teaching staff. These interviews were used to identify three main themes (anxiety caused by at-home learning, change in social interaction and academic impact of at-home learning) that best identified the participants experiences. The results suggested that whilst supportive home environments helped students with ADHD to better manage their symptoms, social anxiety was a significant problem and not all schools allowed students with ADHD to take full advantage of at-home learning for their students with ADHD.
description: Secondary School age children who experienced at-home learning during the lockdown of the Covid pandemic in 2020/2021.
DOI: 10.5281/zenodo.7819647
title: Data supplement for "Stationary broken parity states in active matter models''

description: Data sets and python codes that produce all figures in "Stationary broken parity states in active matter models''. Additionally it contains example Matlab codes that perform the numerical path continuation with pde2path.
DOI: 10.5281/zenodo.7819648
title: Data supplement for "Stationary broken parity states in active matter models''

description: Data sets and python codes that produce all figures in "Stationary broken parity states in active matter models''. Additionally it contains example Matlab codes that perform the numerical path continuation with pde2path.
DOI: 10.48366/r598411
title: Hand gesture recognition methods

description: A comparision of vision-based hand gesture recognition methods based on features used, classification methods, and reported applications
DOI: 10.6084/m9.figshare.22180160
title: Using Facebook user photos to quantify surface water dependency in Southern African arid-zone bird species

description: Birds need to maintain their hydration by either gaining water from their food or by drinking surface water. Many arid-zone birds do not need to consume surface water to maintain body condition. Conservationists need to better understand avian use of surface water sources to inform management plans in a warming world. In this study, we explored the use of Facebook’s image search as a tool to predict interspecific variations in avian surface water use. There was a significant correlation between the proportion of Facebook photographs of each species associated with surface water, and surface water use indices for these species based on published field studies. These findings suggest that Facebook may be a useful source of data for determining the dependence of bird species on surface water. Future research could address the potential for Facebook and other social media platforms for answering a range of ecological questions relating to avian water dependency.
DOI: 10.6084/m9.figshare.22028521
title: The impact of predation by South Island Pied Oystercatchers (<i>Haematopus finschi</i>) on a protected shellfish, the toheroa (<i>Paphies ventricosa</i>), in northern New Zealand

description: In northern New Zealand, there is speculation that predation by a recovering shorebird, the South Island Pied Oystercatcher (<i>Haematopus finschi</i>), has caused the continuing decline of an endemic surf clam, the toheroa (<i>Paphies ventricosa</i>). Consequently, there have been requests by the public for these protected birds to be culled to protect and restore the toheroa. To better inform management and decision-making for these species we set out to understand the impact of oystercatcher predation on toheroa at Ripiro Beach in New Zealand. A study was conducted to establish the spatio-temporal overlap of toheroa and oystercatcher distributions, determine oystercatcher prey selection, and assess the impacts of oystercatcher predation on toheroa population size structure. Monthly surveys over a 12-month period indicated limited spatial overlap between the two species, and that most toheroa beds on Ripiro Beach are not subjected to oystercatcher predation. In areas where oystercatchers and toheroa co-occurred, oystercatchers consumed a variety of prey including polychaetes, small and medium-sized toheroa and a non-threatened surf clam (<i>P. subtriangulata</i>). While oystercatchers do feed on toheroa (and may be capable of locally reducing abundance of small toheroa in a population), feeding on larger individuals (&gt;50 mm in length) was not observed. These results suggest that culling of oystercatchers would be of no benefit for the recovery of toheroa populations. It is likely that less obvious factors are impeding the recovery of toheroa in New Zealand. This study highlights the importance of understanding predator-prey interactions before implementing management actions such as lethal control.
DOI: 10.6084/m9.figshare.22123678
title: Rapid and recent range collapse of Australia’s Red Goshawk <i>Erythrotriorchis radiatus</i>

description: Australia’s Red Goshawk (<i>Erythrotriorchis radiatus</i>) is a taxonomically distinct raptor endemic to the tropics and sub-tropics of eastern and northern Australia, and the Australian mainland’s rarest bird of prey. Classified as <i>Vulnerable</i> when legislation was first enacted in 1992, the species’ status and distribution remain unclear, and it is possibly declining based on limited surveys. However, no comprehensive analysis of its range-wide population trends has ever been undertaken, creating a knowledge gap which potentially delays urgent conservation management. Here, we bridge that knowledge gap. We compile a comprehensive dataset of 1,679 occurrence records spanning the species’ historical range, develop a novel method that overcomes reporting biases centred around nest locations, then identify population trends between 1978 and 2020 at national, state, and regional scales. Our results suggest that the species has declined significantly across eastern Australia and is likely locally extinct in many regions. We estimate the Red Goshawk has disappeared from 34% of its breeding range over the last four decades, and probably persists at extremely low density, if at all, over an additional 29.7% of its breeding range. These results demonstrate the species’ declining population trajectory at multiple scales for the first time and provide further evidence for its up listing under Australian federal legislation to <i>Endangered</i>, using IUCN Red List criterion C2a(ii): small population size and decline. We recommend population surveys and monitoring coupled with targeted research to better understand population trajectories and determine which threats are driving this unique species’ decline.
DOI: 10.6084/m9.figshare.22180160.v1
title: Using Facebook user photos to quantify surface water dependency in Southern African arid-zone bird species

description: Birds need to maintain their hydration by either gaining water from their food or by drinking surface water. Many arid-zone birds do not need to consume surface water to maintain body condition. Conservationists need to better understand avian use of surface water sources to inform management plans in a warming world. In this study, we explored the use of Facebook’s image search as a tool to predict interspecific variations in avian surface water use. There was a significant correlation between the proportion of Facebook photographs of each species associated with surface water, and surface water use indices for these species based on published field studies. These findings suggest that Facebook may be a useful source of data for determining the dependence of bird species on surface water. Future research could address the potential for Facebook and other social media platforms for answering a range of ecological questions relating to avian water dependency.
DOI: 10.6084/m9.figshare.22321057
title: Where are you from? Isotopic tracing of juvenile Olrog’s Gulls from Mar Chiquita during the wintering season

description: Individual traits such as age-class can have profound effects on space utilisation by individual birds, with juvenile birds more often exhibiting dispersive movements. We studied the origin of juvenile Olrog’s Gulls <i>Larus atlanticus</i>, a threatened species, using stable isotopes ratios of carbon (δ<sup>13</sup>C), nitrogen (δ<sup>15</sup>N) and sulphur (δ<sup>34</sup>S). We analysed feathers from individuals captured in the wintering season at Mar Chiquita Coastal Lagoon, Argentina, and the potential trophic sources of their breeding sites at Bahía Blanca and San Blas. Mean δ<sup>13</sup>C was similar for trophic sources and mean δ<sup>15</sup>N was higher for Bahía Blanca. The δ<sup>34</sup>S showed a greater variation among prey species than among sites. The mean contributions of the main colonies resulted in assigning 37.5% individuals as from Bahía Blanca, 16.7% from San Blas, and 45.8% undetermined. Results indicate that Mar Chiquita coastal lagoon attracts juvenile Olrog’s Gulls dispersing from the two main breeding grounds of the species. This work is one of the first approaches to study the origin of dispersive juvenile larids through the application of stable isotope analysis. This isotopic approach allows obtaining trophic and movement information when it is not possible to use other tools.
DOI: 10.6084/m9.figshare.22028521.v1
title: The impact of predation by South Island Pied Oystercatchers (<i>Haematopus finschi</i>) on a protected shellfish, the toheroa (<i>Paphies ventricosa</i>), in northern New Zealand

description: In northern New Zealand, there is speculation that predation by a recovering shorebird, the South Island Pied Oystercatcher (<i>Haematopus finschi</i>), has caused the continuing decline of an endemic surf clam, the toheroa (<i>Paphies ventricosa</i>). Consequently, there have been requests by the public for these protected birds to be culled to protect and restore the toheroa. To better inform management and decision-making for these species we set out to understand the impact of oystercatcher predation on toheroa at Ripiro Beach in New Zealand. A study was conducted to establish the spatio-temporal overlap of toheroa and oystercatcher distributions, determine oystercatcher prey selection, and assess the impacts of oystercatcher predation on toheroa population size structure. Monthly surveys over a 12-month period indicated limited spatial overlap between the two species, and that most toheroa beds on Ripiro Beach are not subjected to oystercatcher predation. In areas where oystercatchers and toheroa co-occurred, oystercatchers consumed a variety of prey including polychaetes, small and medium-sized toheroa and a non-threatened surf clam (<i>P. subtriangulata</i>). While oystercatchers do feed on toheroa (and may be capable of locally reducing abundance of small toheroa in a population), feeding on larger individuals (&gt;50 mm in length) was not observed. These results suggest that culling of oystercatchers would be of no benefit for the recovery of toheroa populations. It is likely that less obvious factors are impeding the recovery of toheroa in New Zealand. This study highlights the importance of understanding predator-prey interactions before implementing management actions such as lethal control.
DOI: 10.6084/m9.figshare.22123678.v1
title: Rapid and recent range collapse of Australia’s Red Goshawk <i>Erythrotriorchis radiatus</i>

description: Australia’s Red Goshawk (<i>Erythrotriorchis radiatus</i>) is a taxonomically distinct raptor endemic to the tropics and sub-tropics of eastern and northern Australia, and the Australian mainland’s rarest bird of prey. Classified as <i>Vulnerable</i> when legislation was first enacted in 1992, the species’ status and distribution remain unclear, and it is possibly declining based on limited surveys. However, no comprehensive analysis of its range-wide population trends has ever been undertaken, creating a knowledge gap which potentially delays urgent conservation management. Here, we bridge that knowledge gap. We compile a comprehensive dataset of 1,679 occurrence records spanning the species’ historical range, develop a novel method that overcomes reporting biases centred around nest locations, then identify population trends between 1978 and 2020 at national, state, and regional scales. Our results suggest that the species has declined significantly across eastern Australia and is likely locally extinct in many regions. We estimate the Red Goshawk has disappeared from 34% of its breeding range over the last four decades, and probably persists at extremely low density, if at all, over an additional 29.7% of its breeding range. These results demonstrate the species’ declining population trajectory at multiple scales for the first time and provide further evidence for its up listing under Australian federal legislation to <i>Endangered</i>, using IUCN Red List criterion C2a(ii): small population size and decline. We recommend population surveys and monitoring coupled with targeted research to better understand population trajectories and determine which threats are driving this unique species’ decline.
DOI: 10.6084/m9.figshare.22715158.v2
title: Matbench Discovery v1.0.0

description: A benchmark for machine learning energy models on inorganic crystal stability prediction from unrelaxed structures
DOI: 10.4227/05/5088f703aafb6
title: Taroom Shire Potters Flat, QLD. VAST-2: Tracking the Transformation of Australia's Vegetated Landscapes
DOI: 10.34740/kaggle/dsv/5974647
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.5281/zenodo.8057991
title: Soil and meteorological data, and finite element simulation framework for heat transfer through shrubs in winter near Lautaret pass, French Alps

description: The data allow the calculation using finite element modeling of heat transfer through shrub branches and snow between the atmosphere and the soil. The shrubs are green alders (Alnus viridis). The site where they are found is called Alnus-Nivus (45.034750°N, 6.413630°E, 2034 m asl) near Col du Lautaret, French Alps. The soil data consist in temperature and volumetric liquid water content at 5 and 15 cm depths. One spot is near the alder collar (ALNUS), the other spot is 6 m away, under grass (GRASS). The meteorological data were obtained from the FR-Clt station, 750 m away (45.041278°N, 6.410611°E, 2046 m asl). See (Gupta et al., 2023) for details. Only the data relevant for heat transfer simulations are given. The simulation framework gives the alder mesh used in the heat transfer simulations. Typical simulations use a wood thermal conductivity of 1 W m<sup>-1</sup> K<sup>-1</sup> and a snow thermal conductivity of 0.1 W m<sup>-1</sup> K<sup>-1</sup>. Based on observations, the snow height at Alnus-Nivus is likely to be at least twice the value at FR-Clt. Forcing uses the snow surface temperature, derived from upwelling longwave radiation using an emissivity of 1. The data allow testing thermal bridging through shrub branches. These data are used in a publication in preparation: Domine, Fourteau, Choler, Exploration of Thermal Bridging Through Shrub Branches in Alpine Snow. Reference Gupta, A., Reverdy, A., Cohard, J. M., Hector, B., Descloitres, M., Vandervaere, J. P., Coulaud, C., Biron, R., Liger, L., Maxwell, R., Valay, J. G., and Voisin, D.: Impact of distributed meteorological forcing on simulated snow cover and hydrological fluxes over a mid-elevation alpine micro-scale catchment, Hydrol. Earth Syst. Sci., 27, 191-212, 2023.
DOI: 10.6084/m9.figshare.23542575
title: Feature interaction network based on Hierarchical Decoupled Convolution Partial segmentation results applied to <strong>BraTs2018</strong>.

description: Feature interaction network based on Hierarchical Decoupled Convolution Partial segmentation results applied to <strong>BraTs2018</strong>.
DOI: 10.6084/m9.figshare.23542575.v1
title: Feature interaction network based on Hierarchical Decoupled Convolution Partial segmentation results applied to <strong>BraTs2018</strong>.

description: Feature interaction network based on Hierarchical Decoupled Convolution Partial segmentation results applied to <strong>BraTs2018</strong>.
DOI: 10.34740/kaggle/dsv/5974899
title: Pypi sython panda
DOI: 10.5519/qd.3ky1f7mf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (50 records)
DOI: 10.5519/qd.zqez3wij
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (171 records)
DOI: 10.5519/qd.2my074f1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (113 records)
DOI: 10.6084/m9.figshare.23542548
title: data of Shi et al. 2023.xlsx

description: We sampled wild insect pollinators in 18 smallholder farmland to explore the impact of oilseed rape and Chinese milk vetch on wild pollinator communities across a semi-natural habitat gradient.
DOI: 10.5281/zenodo.8057996
title: Metagenome-assembled genomes(MAGs) generated by MetaCC binning

description: MAGs generated by MetaCC binning from the human gut short-read, the wastewater (WW) short-read, the cow rumen long-read, and the sheep gut long-read metaHi-C datasets
DOI: 10.5281/zenodo.8057995
title: Metagenome-assembled genomes(MAGs) generated by MetaCC binning

description: MAGs generated by MetaCC binning from the human gut short-read, the wastewater (WW) short-read, the cow rumen long-read, and the sheep gut long-read metaHi-C datasets
DOI: 10.6084/m9.figshare.23542656
title: Dataser _ perception_students_ <strong>midwifery_2022</strong>

description: Full dataset students_perception