cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bmgfw
title: CCDC 2163658: Experimental Crystal Structure Determination

description: Related Article: Yang Li, Katrin Pelzer, Damien Sechet, Geordie Creste, Dominique Matt, Pierre Braunstein, Dominique Armspach|2022|Dalton Trans.|51|11226|doi:10.1039/D2DT01553F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmgl1
title: CCDC 2163663: Experimental Crystal Structure Determination

description: Related Article: Yang Li, Katrin Pelzer, Damien Sechet, Geordie Creste, Dominique Matt, Pierre Braunstein, Dominique Armspach|2022|Dalton Trans.|51|11226|doi:10.1039/D2DT01553F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmkfz
title: CCDC 2163751: Experimental Crystal Structure Determination

description: Related Article: Yang Li, Katrin Pelzer, Damien Sechet, Geordie Creste, Dominique Matt, Pierre Braunstein, Dominique Armspach|2022|Dalton Trans.|51|11226|doi:10.1039/D2DT01553F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7284/119422
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise CB1037 using a RDI WM-600 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119423
title: Anemometer data collected during research cruise CB1037 using a RMYoung 05106 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119425
title: Barometer data collected during research cruise CB1037 using a RMYoung 61302 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119421
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CB1037 using a SeaBird SBE-911+ instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119424
title: Hygrometer data collected during research cruise CB1037 using a RMYoung 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119426
title: Radiometer data collected during research cruise CB1037 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119427
title: Singlebeam Echosounder data collected during research cruise CB1037 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119428
title: TSG (Thermosalinograph) data collected during research cruise CB1037 using a SeaBird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6073/pasta/28d86152f69c266912f3093f85fbe708
title: O. mykiss passages at the Stanislaus River weir, 2005-2020

description: The Central Valley Project Improvement Act (CVPIA) provides funds to aid the San Joaquin Basin Steelhead Collaborative and initiate a Steelhead Life-Cycle Monitoring Program. This dataset includes observations of O. mykiss in the Stanislaus River during the steelhead spawning migration period, September through May. Fish are observed at an Alaskan-style weir outfitted with a VAKI Riverwatcher fish counting device. The counting device provides visual records of upstream passing individuals that are later reviewed by an experienced biologist. During times when the counting device is offline, a continuous video feed is reviewed to provide counts and identifications of passing fish. The length of passing fish is estimated using a known body depth to length ratio derived from individuals trapped and measured at the weir. The weir also has a trap box that, when closed, allows investigators to physically capture fish for measurements, biological sample collection, and injection of a PIT tag. There is also a PIT tag antenna affixed to the weir allowing detection of PIT tagged fish. There are three datasets currently associated with this project, 1) passage data for all O. mykiss from 2005 through 2020, 2) O. mykiss that were captured and processed from the trap, and 3) PIT tag detections from the PIT antenna.
DOI: 10.7284/125810
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise CB1045 using a RDI WM-600 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125811
title: Anemometer data collected during research cruise CB1045 using a RMYoung 05106 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125813
title: Barometer data collected during research cruise CB1045 using a RMYoung 61302 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125809
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CB1045 using a SeaBird SBE-911+ instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125812
title: Hygrometer data collected during research cruise CB1045 using a RMYoung 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125814
title: Radiometer data collected during research cruise CB1045 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125815
title: Singlebeam Echosounder data collected during research cruise CB1045 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125816
title: TSG (Thermosalinograph) data collected during research cruise CB1045 using a SeaBird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20000147
title: Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice

description: Source Data for manuscript titled "<strong>Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice"</strong>
DOI: 10.6084/m9.figshare.20000147.v2
title: Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice

description: Source Data for manuscript titled "<strong>Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice"</strong>
DOI: 10.6084/m9.figshare.20000147.v1
title: Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice

description: Source Data for manuscript titled "<strong>Metabolomic profiling reveals muscle metabolic changes following iliac arteriovenous fistula creation in mice"</strong>
DOI: 10.6084/m9.figshare.20425383.v1
title: Ruthsatz_et_al_2022_Timing of parental breeding influences pollution sensitivity.xlsx

description: Parents: Data of adults R.t_container_embryo: Data for all eggs RT_embryo: Data for all hatchlings RT_metamorphs: Data for larvae at Gosner stage 42 RT_jueveniles: Data for juveniles <br>
DOI: 10.7284/125240
title: Anemometer data collected during research cruise CB1050 using a RMYoung 05106 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125242
title: Barometer data collected during research cruise CB1050 using a RMYoung 61302 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125239
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CB1050 using a SeaBird SBE-911+ instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125241
title: Hygrometer data collected during research cruise CB1050 using a RMYoung 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125243
title: Radiometer data collected during research cruise CB1050 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125244
title: Singlebeam Echosounder data collected during research cruise CB1050 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125245
title: TSG (Thermosalinograph) data collected during research cruise CB1050 using a SeaBird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5519/qd.qy94cdch
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1444 records)
DOI: 10.6084/m9.figshare.20425302
title: Project Data

description: All raw data for this paper in zip format, experiments separated by folder.
DOI: 10.6084/m9.figshare.20425302.v1
title: Project Data

description: All raw data for this paper in zip format, experiments separated by folder.
DOI: 10.6084/m9.figshare.12936503
title: Sequencing of human identification markers in an Uyghur population using the MiSeq FGx<sup>TM</sup> Forensic Genomics System

description: Massively parallel sequencing (MPS) offers a useful alternative to capillary electrophoresis (CE) based analysis of human identification markers in forensic genetics. By sequencing short tandem repeats (STRs) instead of determining the fragment lengths by CE, the sequence variation within the repeat region and the flanking regions may be identified. In this study, we typed 264 Uyghur individuals using the MiSeq FGx™ Forensic Genomics System and Primer Mix A of the ForenSeq™ DNA Signature Prep Kit that amplifies 27 autosomal STRs, 25 Y-STRs, seven X-STRs, and 94 HID-SNPs. STRinNGS v.1.0 and GATK 3.6 were used to analyse the STR regions and HID-SNPs, respectively. Increased allelic diversity was observed for 33 STRs with the PCR-MPS assay. The largest increases were found in DYS389II and D12S391, where the numbers of sequenced alleles were 3–4 times larger than those of alleles determined by repeat length alone. A relatively large number of flanking region variants (28 SNPs and three InDels) were observed in the Uyghur population. Seventeen of the flanking region SNPs were rare, and 12 of these SNPs had no accession number in dbSNP. The combined mean match probability and typical paternity index based on 26 sequenced autosomal STRs were 3.85E−36 and 1.49E + 16, respectively. This was 10 000 times lower and 1 000 times higher, respectively, than the same parameters calculated from STR repeat lengths.Key PointsSequencing data on STRs and SNPs used for human identification are presented for the Uyghur population.STRinNGS v.1.0 was used to analyse the flanking regions of STRs.The concordance between PCR-CE and PCR-MPS results was 99.86%.Detection of sequence variation in STRs and their flanking regions increased the allelic diversity. Sequencing data on STRs and SNPs used for human identification are presented for the Uyghur population. STRinNGS v.1.0 was used to analyse the flanking regions of STRs. The concordance between PCR-CE and PCR-MPS results was 99.86%. Detection of sequence variation in STRs and their flanking regions increased the allelic diversity.
DOI: 10.6084/m9.figshare.12936503.v2
title: Sequencing of human identification markers in an Uyghur population using the MiSeq FGx<sup>TM</sup> Forensic Genomics System

description: Massively parallel sequencing (MPS) offers a useful alternative to capillary electrophoresis (CE) based analysis of human identification markers in forensic genetics. By sequencing short tandem repeats (STRs) instead of determining the fragment lengths by CE, the sequence variation within the repeat region and the flanking regions may be identified. In this study, we typed 264 Uyghur individuals using the MiSeq FGx™ Forensic Genomics System and Primer Mix A of the ForenSeq™ DNA Signature Prep Kit that amplifies 27 autosomal STRs, 25 Y-STRs, seven X-STRs, and 94 HID-SNPs. STRinNGS v.1.0 and GATK 3.6 were used to analyse the STR regions and HID-SNPs, respectively. Increased allelic diversity was observed for 33 STRs with the PCR-MPS assay. The largest increases were found in DYS389II and D12S391, where the numbers of sequenced alleles were 3–4 times larger than those of alleles determined by repeat length alone. A relatively large number of flanking region variants (28 SNPs and three InDels) were observed in the Uyghur population. Seventeen of the flanking region SNPs were rare, and 12 of these SNPs had no accession number in dbSNP. The combined mean match probability and typical paternity index based on 26 sequenced autosomal STRs were 3.85E−36 and 1.49E + 16, respectively. This was 10 000 times lower and 1 000 times higher, respectively, than the same parameters calculated from STR repeat lengths.Key PointsSequencing data on STRs and SNPs used for human identification are presented for the Uyghur population.STRinNGS v.1.0 was used to analyse the flanking regions of STRs.The concordance between PCR-CE and PCR-MPS results was 99.86%.Detection of sequence variation in STRs and their flanking regions increased the allelic diversity. Sequencing data on STRs and SNPs used for human identification are presented for the Uyghur population. STRinNGS v.1.0 was used to analyse the flanking regions of STRs. The concordance between PCR-CE and PCR-MPS results was 99.86%. Detection of sequence variation in STRs and their flanking regions increased the allelic diversity.
DOI: 10.6084/m9.figshare.12936503.v1
title: Sequencing of human identification markers in an Uyghur population using the MiSeq FGx<sup>TM</sup> Forensic Genomics System

description: Massively parallel sequencing (MPS) offers a useful alternative to capillary electrophoresis (CE) based analysis of human identification markers in forensic genetics. By sequencing short tandem repeats (STRs) instead of determining the fragment lengths by CE, the sequence variation within the repeat region and the flanking regions may be identified. In this study, we typed 264 Uyghur individuals using the MiSeq FGx™ Forensic Genomics System and Primer Mix A of the ForenSeq™ DNA Signature Prep Kit that amplifies 27 autosomal STRs, 25 Y-STRs, seven X-STRs, and 94 HID-SNPs. STRinNGS v.1.0 and GATK 3.6 were used to analyze the STR regions and HID-SNPs, respectively. Increased allelic diversity was observed for 33 STRs with the PCR-MPS assay. The largest increases were found in DYS389II and D12S391, where the numbers of sequenced alleles were 3–4 times larger than those of alleles determined by repeat length alone. A relatively large number of flanking region variants (28 SNPs and three InDels) were observed in the Uyghur population. Seventeen of the flanking region SNPs were rare, and 12 of these SNPs had no accession number in dbSNP. The combined mean match probability and typical paternity index based on 26 sequenced autosomal STRs were 3.85E−36 and 1.49E + 16, respectively. This was 10 000 times lower and 1 000 times higher, respectively, than the same parameters calculated from STR repeat lengths.HighlightsSequencing data on STRs and SNPs used for human identification are presented for the Uyghur population.STRinNGS v.1.0 was used to analyze the flanking regions of STRs.The concordance between PCR-CE and PCR-MPS results was 99.86%.Detection of sequence variation in STRs and their flanking regions increased the allelic diversity. Sequencing data on STRs and SNPs used for human identification are presented for the Uyghur population. STRinNGS v.1.0 was used to analyze the flanking regions of STRs. The concordance between PCR-CE and PCR-MPS results was 99.86%. Detection of sequence variation in STRs and their flanking regions increased the allelic diversity.
DOI: 10.7284/125330
title: Anemometer data collected during research cruise CB1057 using a RMYoung 05106 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125332
title: Barometer data collected during research cruise CB1057 using a RMYoung 61302 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125331
title: Hygrometer data collected during research cruise CB1057 using a RMYoung 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125333
title: Radiometer data collected during research cruise CB1057 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125334
title: Singlebeam Echosounder data collected during research cruise CB1057 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125335
title: TSG (Thermosalinograph) data collected during research cruise CB1057 using a SeaBird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.15060138.v4
title: The Pandemic Experience Corpus (June - July 2020)

description: Datasets each containing responses in a different language:- English (EN.csv)- Japanese (JP.csv) + its English translation (JP2EN.csv)- Spanish (ES.csv) + its English translation (ES2EN.csv)<br>
DOI: 10.6084/m9.figshare.15060138.v5
title: The Pandemic Experience Corpus (June - July 2020)

description: Datasets each containing responses in a different language:- English (EN.csv)- Japanese (JP.csv) + its English translation (JP2EN.csv)- Spanish (ES.csv) + its English translation (ES2EN.csv)<br>
DOI: 10.7284/139658
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR45 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125313
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise CB1065 using a RDI WM-600 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125314
title: Anemometer data collected during research cruise CB1065 using a RMYoung 05106 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125316
title: Barometer data collected during research cruise CB1065 using a RMYoung 61302 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125312
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CB1065 using a SeaBird SBE-911+ instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125315
title: Hygrometer data collected during research cruise CB1065 using a RMYoung 41382 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125317
title: Radiometer data collected during research cruise CB1065 using a Biospherical QSP-2150 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125318
title: Singlebeam Echosounder data collected during research cruise CB1065 using a Knudsen 320M instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/125319
title: TSG (Thermosalinograph) data collected during research cruise CB1065 using a SeaBird SBE-21 instrument system onboard the platform RV Clifford A. Barnes

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.13611285.v8
title: A Pseudo-Likelihood Approach to Linear Regression With Partially Shuffled Data

description: Recently, there has been significant interest in linear regression in the situation where predictors and responses are not observed in matching pairs corresponding to the same statistical unit as a consequence of separate data collection and uncertainty in data integration. Mismatched pairs can considerably impact the model fit and disrupt the estimation of regression parameters. In this article, we present a method to adjust for such mismatches under “partial shuffling” in which a sufficiently large fraction of (predictors, response)-pairs are observed in their correct correspondence. The proposed approach is based on a pseudo-likelihood in which each term takes the form of a two-component mixture density. expectation-maximization schemes are proposed for optimization, which (i) scale favorably in the number of samples, and (ii) achieve excellent statistical performance relative to an oracle that has access to the correct pairings as certified by simulations and case studies. In particular, the proposed approach can tolerate considerably larger fraction of mismatches than existing approaches, and enables estimation of the noise level as well as the fraction of mismatches. Inference for the resulting estimator (standard errors, confidence intervals) can be based on established theory for composite likelihood estimation. Along the way, we also propose a statistical test for the presence of mismatches and establish its consistency under suitable conditions. Supplemental files for this article are available online.