cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16942265
title: Data from: Proteomic profiling unveils compensatory physiological mechanisms of an annelid living across a natural persistent deoxygenation gradient

description: This dataset includes the untargeted proteomic quantification data for the annelid Neoleanira tetragona collected along the Lower Estuary and Gulf of St. lawrence, in which an oxygen concentration exists along the bottom waters, from the Gulf to the head of the lower St. Lawrence Estuary.

ABSTRACT:

Dissolved oxygen is a major environmental driver in aquatic environments, and its decline in the global ocean over recent decades threatens marine fauna, particularly benthic invertebrates. These organisms, often sessile or sedentary, cannot escape persistent environmental hypoxia and must rely on the adjustment of physiological mechanisms, such as energy metabolism and cell functioning pathways, underpinning their ability to cope with these challenging conditions. However, the molecular bases of such mechanisms, particularly under in situ conditions, are yet poorly understood. Here, we characterised the proteomic profile of the annelid Neoleanira tetragona, a species widespread in the North Atlantic Ocean, across the permanent deoxygenation gradient of the Estuary and Gulf of St. Lawrence (EGSL). Specifically, whole specimens were collected from four regions of the EGSL deoxygenation gradient and were analysed using high-resolution LC-MS/MS with a shotgun proteomics approach. Region pairwise comparisons through linear models (LIMMA) showed no differentially abundant proteins, but generalised linear latent variables models identified 59 proteins with differential abundance linked to environmental oxygen and/or food availability. An overrepresentation of tricarboxylic acid cycle via citrate synthase activity was supported in response to low oxygen and high food availability for the annelid. Our results suggest that N. tetragona possesses a compensatory mechanism to cope with the in situ persistent deoxygenation, which involves the accumulation of key proteins that are responsible for maintaining steady energy metabolism under in situ persistent deoxygenation. Our findings contribute to shed light on physiological strategies that benthic marine invertebrates can employ to cope with ongoing and future environmental challenges.
DOI: 10.5281/zenodo.16942264
title: Data from: Proteomic profiling unveils compensatory physiological mechanisms of an annelid living across a natural persistent deoxygenation gradient

description: This dataset includes the untargeted proteomic quantification data for the annelid Neoleanira tetragona collected along the Lower Estuary and Gulf of St. lawrence, in which an oxygen concentration exists along the bottom waters, from the Gulf to the head of the lower St. Lawrence Estuary.

ABSTRACT:

Dissolved oxygen is a major environmental driver in aquatic environments, and its decline in the global ocean over recent decades threatens marine fauna, particularly benthic invertebrates. These organisms, often sessile or sedentary, cannot escape persistent environmental hypoxia and must rely on the adjustment of physiological mechanisms, such as energy metabolism and cell functioning pathways, underpinning their ability to cope with these challenging conditions. However, the molecular bases of such mechanisms, particularly under in situ conditions, are yet poorly understood. Here, we characterised the proteomic profile of the annelid Neoleanira tetragona, a species widespread in the North Atlantic Ocean, across the permanent deoxygenation gradient of the Estuary and Gulf of St. Lawrence (EGSL). Specifically, whole specimens were collected from four regions of the EGSL deoxygenation gradient and were analysed using high-resolution LC-MS/MS with a shotgun proteomics approach. Region pairwise comparisons through linear models (LIMMA) showed no differentially abundant proteins, but generalised linear latent variables models identified 59 proteins with differential abundance linked to environmental oxygen and/or food availability. An overrepresentation of tricarboxylic acid cycle via citrate synthase activity was supported in response to low oxygen and high food availability for the annelid. Our results suggest that N. tetragona possesses a compensatory mechanism to cope with the in situ persistent deoxygenation, which involves the accumulation of key proteins that are responsible for maintaining steady energy metabolism under in situ persistent deoxygenation. Our findings contribute to shed light on physiological strategies that benthic marine invertebrates can employ to cope with ongoing and future environmental challenges.
DOI: 10.7266/s4zp4c7f
title: Dataset for: Potential connectivity among spatially distinct management zones for Bonefish (Albula vulpes) via larval dispersal
DOI: 10.6073/pasta/e3e67039141f54c24c87326e5d15f49a
title: Life histories of the perennial geophyte Erythronium grandiflorum (Liliaceae) in Colorado subalpine transplant garden from annual measurements, 1991 onward

description: In an outdoor garden at Irwin, Colorado, we established glacier lily plants in open-bottomed PVC pots that protected them from gopher attack. The initial cohorts were excavated from field sites as mature corms of unknown age. Later cohorts were grown from seed, so their ages are known. Each spring since 1991, we have noted fruit and flower production. In August, after the aboveground parts have died back, we exhume the plants, wash off the soil, weigh the corms, characterize their morphology, photograph them, and replant them. If a corm splits, we replant the pieces in separate pots. The study is ongoing, with 264 plants in 2019. Main findings through 2020: plants produce 0-4 flowers per year, depending on size; most plants flower each year; death is rare, with many plants having survived the entire study; setting a fruit reduces corm substantially (cost of reproduction); plants appear to regulate weight by adjusting flower production, and by splitting; genotypes vary in splitting propensity. Oddly, mortality is higher in very large corms than in mid-sized ones. Evidence for senescence is scant.
DOI: 10.5885/45327ad-5245d08606ab4f52
title: Carbon, nitrogen and water content of the active layer from sites across the Canadian Arctic
title: Teneur en carbone, en azote et en eau de la couche active de sites situés dans l'Arctique canadien
DOI: 10.15468/dl.t9rnpg
title: Occurrence Download

description: A dataset containing 692421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Hymenoptera",
 "Year 1000-2024"
 ]
}

 The dataset includes 692421 records from 232 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042580-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d945zg
title: Occurrence Download

description: A dataset containing 972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 972 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042601-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8arjm
title: Occurrence Download

description: A dataset containing 9479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9479 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042603-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvpauq
title: Occurrence Download

description: A dataset containing 18680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18680 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042602-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5885/45318sl-f1c26eb4d6c54f3a
title: Climate station data from Macpès research forest in the Rimouski area, Quebec, Canada
title: Données des stations climatiques de la Forêt d’enseignement et de recherche de Macpès dans la région de Rimouski, Québec, Canada
DOI: 10.5281/zenodo.16753111
title: Dataset "The electrical conductivity of the lower mantle from high-pressure/high-temperature measurements of pyrolite and ten years of geomagnetic observations"

description: Experimentally measured electrical conductivity of pyrolite at high pressure and room temperature/high temperature

Radial electrical conductivity model of the mantle
DOI: 10.5885/45409xd-79a199b76bcc4110
title: Curated reference database of SSU rRNA for northern marine and freshwater communities of Archaea, Bacteria and microbial eukaryotes
title: Base de données de référence du gène ARNr SSU pour les communautés marines et d'eau douce nordiques d’Archaea, Bacteria et eucaryotes microbiens
DOI: 10.5281/zenodo.16942552
title: Supplementary materials for "Climate-amplified disturbances eliminate coniferous forests at a boreal-temperate ecotone"

description: Suuplementary 1 - Additional tables and figures

Suuplementary 2 - U-Net CNN, Python code

Suuplementary 3 - Ripley's K-function, R code and shape files

Suuplementary 4 - Windthrow vulnerability analysis, Python code
DOI: 10.15468/dl.emfyt7
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Bhutan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 129 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042604-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jk4k8j
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 403 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042605-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkvksk
title: Occurrence Download

description: A dataset containing 32273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Reynoutria japonica, Polygonum cuspidatum, Polygonum cuspidatum, Polygonum cuspidatum, Polygonum cuspidatum, Polygonum cuspidatum, Fallopia japonica, Fallopia japonica)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 32273 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014213-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db9t52
title: Occurrence Download

description: A dataset containing 14069 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Adenocarpus gibbsianus, Iberis carnosa embergeri, Leucanthemum arundanum, Linaria benitoi, Linaria lamarckii, Moehringia fontqueri, Narcissus longispathus, Picris willkommii, Tephroseris elodes, Isoetes durieui, Taraxacum gaditanum, Phyllitis sagittata, Dianthus hinoxianus, Erodium cazorlanum, Coronopus navasii, Polyommatus golgus, Lithodora nitida, Rosmarinus tomentosus)"
 ]
}

 The dataset includes 14069 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014214-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31078642
title: Temperature Effect on Bonding Quality of Polyether-ether-ketone Composites during Injection Over-Molding

description: This dataset supports the research on the<b>Temperature Effect on Bonding Quality of Polyether-ether-ketone Composites during Injection Over-Molding</b>, which combines numerical simulation and experimental verification to investigate the key process parameters and their effects on interfacial bonding performance of the composites.The dataset is composed of two main parts:<b>Experimental data</b> (stored in Origin format): Includes raw test results of lap shear strength and material crystallization behavior under different injection process conditions. Each data file corresponds to the figure number in the manuscript for easy cross-referencing and verification.<b>Numerical simulation data</b> (compressed package containing .mpi files): Consists of Moldflow simulation models and results for the injection overmolding process, which can be directly opened and viewed using Moldflow software. The simulation data is used to optimize process parameters, and its reliability is verified by the experimental results.
DOI: 10.6084/m9.figshare.31078642.v1
title: Temperature Effect on Bonding Quality of Polyether-ether-ketone Composites during Injection Over-Molding

description: This dataset supports the research on the<b>Temperature Effect on Bonding Quality of Polyether-ether-ketone Composites during Injection Over-Molding</b>, which combines numerical simulation and experimental verification to investigate the key process parameters and their effects on interfacial bonding performance of the composites.The dataset is composed of two main parts:<b>Experimental data</b> (stored in Origin format): Includes raw test results of lap shear strength and material crystallization behavior under different injection process conditions. Each data file corresponds to the figure number in the manuscript for easy cross-referencing and verification.<b>Numerical simulation data</b> (compressed package containing .mpi files): Consists of Moldflow simulation models and results for the injection overmolding process, which can be directly opened and viewed using Moldflow software. The simulation data is used to optimize process parameters, and its reliability is verified by the experimental results.
DOI: 10.34810/data2821
title: Replication Data for: Improved Biostimulant Production through Solid-State Fermentation of Green Waste Using Low-Temperature Strategy in Tray Bioreactors

description: Raw data from a series of experiments aimed to develop solid-state fermentation (SSF) process to increase the production of biostimulants (indole-3-acetic acid-IAA) in a tray bioreactor using a temperature strategy. The process was conducted by Trichoderma harzianum, utilizing green waste as substrate.
description: MS Excel, null
description: Sigmaplot, null
description: Minitab, 17.1.0
description: RStudio, 24.12.1
description: METHODOLOGICAL INFORMATION

The experiments was involved Solid state fermentation (SSF) using Trichoderma harzianum as inoculum and green waste (grass clipping) as substrate.
The production of IAA and conidial spores was studied in a tray reactor. 
A PCA and GLMM analysis were performed.
The effect of a low temperature strategy was tested to increase the IAA production.
 
1. Description of methods used for collection-generation of data:

A solid state fermentation was conducted in a tray bioreactor. The mixture of green waste and bulking agent (wood chips) was inoculated by Trichoderma harzianum. The fermentation was 10 days.
In each experiment one single trya was used and tThe total wet weight of material loaded in tray was 500 g. The material aerated with the airflow of 2.9 - 3.7 mL min⁻¹ g⁻¹ DM. 
10 g of solid samples taken from the tray reactor in specific days during fermentaion was mixed with 50 mL Tween 80 solution (0.1%) in Erlenemeye fasks. After 30 min agitation, the liquid phase used for spore and IAA analysis. 


2. Methods for processing the data: 

-Bio pesticide measured as conidial spores of Trichoderma which counted using a Neubauer Chamber and microscope.
-IAA was quantified by HPLC-UV.
-Oxygen consumption was measured as specific oxygen uptake rate (sOUR) using a system developed by the group

3. Instrument- or software- specific information needed to interpret the data:

- Excel or Sigmaplot.
- Minitab 17.1.0 (Minitab Inc. State College, Pennsylvania, United States) to perform PCA.
- RStudio 24.12.1 to perform GLMM


4. Instruments, calibration and standards information:

- Neubauer chamber (Brand™ 717805)
- Optical microscope (Olympus BH2)
- Oxygen sensors (Alphasense, UK) 
- Mass flowmeter (Bronkhorst, Netherlands)
- Temperature sensors (Thermochron iButton device, Maxim Integrated, U.S)
- HPLC Dionex Ultimate 3000 (Dionex, Idstein, Germany)
- HPlc column LC Kinetex® 5 µm EVO C18 100 Å (250 × 4.6 mm)


5. Environmental or experimental conditions:

- Tichpderma harzianum CECT 2929 was cryopreserved at -80°C.
- Microorganism cultured in malt extrat agar at room temperature for 6-8 days.
- Fermentations was conducted in tray reactor at room temperature.

6. Quality-assurance procedures performed on the data:

During each fermentation, samples were on days taken 3, 5, 7, 10, 13, and 15. At each time point, two independent samples were taken from randomly selected spots on the tray. 
The analysis of IAA and spores was carried out in triplicate from each samples.
DOI: 10.15468/dl.uxp3cc
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spodoptera frugiperda",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014215-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53qryq
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spodoptera frugiperda",
 "Country is Ghana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014216-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfvf8e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spodoptera frugiperda",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014217-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60797/rulb.2026.73.17.2
title: Фрейм «Любовь – Физическая боль»

description: Russian Linguistic Bulletin, Выпуск 1 (73) 2026
DOI: 10.15468/dl.xr3xs6
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rudbeckia laciniata)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 145 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014218-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.30964552
title: Supplement Number 1

description: benchmarking of electronic structure methods and neural network potential, geometric parameters of the transition state, accuracy evaluation of the neural network potential, computational methodology for thermal rate constants, statistical analysis of nonadiabatic transitions, and assessment of rotational state effects on reaction dynamics
DOI: 10.60893/figshare.jcp.30964552.v1
title: Supplement Number 1

description: benchmarking of electronic structure methods and neural network potential, geometric parameters of the transition state, accuracy evaluation of the neural network potential, computational methodology for thermal rate constants, statistical analysis of nonadiabatic transitions, and assessment of rotational state effects on reaction dynamics
DOI: 10.25824/redu/0cmbq8
title: Dados eye tracking de validação do Thorasim

description: Este conjunto de dados reúne informações coletadas durante o desenvolvimento e validação do simulador ThoraSim para treinamento em toracocentese guiada por ultrassom. Os dados foram obtidos a partir da participação de especialistas médicos e incluem métricas quantitativas de rastreamento ocular (eye-tracking), como número de fixações e revisitações visuais, organizadas por condição experimental (monitor e phantom) e por quadrantes do simulador. O conjunto também contempla dados qualitativos provenientes de respostas abertas de questionários aplicados aos especialistas, referentes à avaliação da estrutura física do simulador e ao seu potencial para treinamento. Todos os dados foram anonimizados e não contêm informações que permitam a identificação dos participantes. A metodologia detalhada de coleta, análise estatística e interpretação dos resultados encontra-se descrita no trabalho acadêmico associado a este conjunto de dados.
DOI: 10.17909/bxmt-4s28
title: Data from Paper Entitled "Spectral Decomposition Reveals Surface Processes on Europa"
DOI: 10.15468/dl.4pr3xx
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clidemia hirta"
 ]
}

 The dataset includes 120 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014220-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jvb.30936347
title: Supporting Information

description: Supporting Information
DOI: 10.60893/figshare.jvb.30936347.v1
title: Supporting Information

description: Supporting Information
DOI: 10.60797/rulb.2026.73.11.1
title: Распределение лексических связок по категориям

description: Russian Linguistic Bulletin, Выпуск 1 (73) 2026