cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25470195.v1
title: Online resource 4-2: Field geology, petrology and geochronology of pluton-dyke systems, the Trapecio and Ushuaia Peninsula dyke swarms (Fuegian Andes): emplacement conditions and relation with tectonics

description: Online resource 4. The results of zircon U-Pb and hornblende Ar-Ar age measurements and ratios (Table S4 Geochronology TR59 (Trapecio dykes)).
DOI: 10.6084/m9.figshare.25470198.v1
title: Online resource 4-6: Field geology, petrology and geochronology of pluton-dyke systems, the Trapecio and Ushuaia Peninsula dyke swarms (Fuegian Andes): emplacement conditions and relation with tectonics

description: Online resource 4. The results of zircon U-Pb and hornblende Ar-Ar age measurements and ratios (Table S8 Geochronology MTC298B (UP)).
DOI: 10.6084/m9.figshare.25470198
title: Online resource 4-6: Field geology, petrology and geochronology of pluton-dyke systems, the Trapecio and Ushuaia Peninsula dyke swarms (Fuegian Andes): emplacement conditions and relation with tectonics

description: Online resource 4. The results of zircon U-Pb and hornblende Ar-Ar age measurements and ratios (Table S8 Geochronology MTC298B (UP)).
DOI: 10.6084/m9.figshare.25470201
title: Online resource 5: Field geology, petrology and geochronology of pluton-dyke systems, the Trapecio and Ushuaia Peninsula dyke swarms (Fuegian Andes): emplacement conditions and relation with tectonics

description: Online resource 5. Thermobarometric results.
DOI: 10.6084/m9.figshare.25470201.v1
title: Online resource 5: Field geology, petrology and geochronology of pluton-dyke systems, the Trapecio and Ushuaia Peninsula dyke swarms (Fuegian Andes): emplacement conditions and relation with tectonics

description: Online resource 5. Thermobarometric results.
DOI: 10.6084/m9.figshare.25470104
title: Comparative genomic analyses reveal evidence for adaptive A-to-I RNA editing in insect <i>Adar</i> gene

description: Although A-to-I RNA editing leads to similar effects to A-to-G DNA mutation, nonsynonymous RNA editing (recoding) is believed to confer its adaptiveness by ‘epigenetically’ regulating proteomic diversity in a temporospatial manner, avoiding the pleiotropic effect of genomic mutations. Recent discoveries on the evolutionary trajectory of Ser&gt;Gly auto-editing site in insect <i>Adar</i> gene demonstrated a selective advantage to having an editable codon compared to uneditable ones. However, apart from pure observations, quantitative approaches for justifying the adaptiveness of individual RNA editing sites are still lacking. We performed a comparative genomic analysis on 113 Diptera species, focusing on the <i>Adar</i> Ser&gt;Gly auto-recoding site in <i>Drosophila</i>. We only found one species having a derived Gly at the corresponding site, and this occurrence was significantly lower than genome-wide random expectation. This suggests that the <i>Adar</i> Ser&gt;Gly site is unlikely to be genomically replaced with G during evolution, and thus indicating the advantage of editable status over hardwired genomic alleles. Similar trends were observed for the conserved Ile&gt;Met recoding in gene <i>Syt1</i>. In the light of evolution, we established a comparative genomic approach for quantitatively justifying the adaptiveness of individual editing sites. Priority should be given to such adaptive editing sites in future functional studies.
DOI: 10.6084/m9.figshare.25470104.v1
title: Comparative genomic analyses reveal evidence for adaptive A-to-I RNA editing in insect <i>Adar</i> gene

description: Although A-to-I RNA editing leads to similar effects to A-to-G DNA mutation, nonsynonymous RNA editing (recoding) is believed to confer its adaptiveness by ‘epigenetically’ regulating proteomic diversity in a temporospatial manner, avoiding the pleiotropic effect of genomic mutations. Recent discoveries on the evolutionary trajectory of Ser&gt;Gly auto-editing site in insect <i>Adar</i> gene demonstrated a selective advantage to having an editable codon compared to uneditable ones. However, apart from pure observations, quantitative approaches for justifying the adaptiveness of individual RNA editing sites are still lacking. We performed a comparative genomic analysis on 113 Diptera species, focusing on the <i>Adar</i> Ser&gt;Gly auto-recoding site in <i>Drosophila</i>. We only found one species having a derived Gly at the corresponding site, and this occurrence was significantly lower than genome-wide random expectation. This suggests that the <i>Adar</i> Ser&gt;Gly site is unlikely to be genomically replaced with G during evolution, and thus indicating the advantage of editable status over hardwired genomic alleles. Similar trends were observed for the conserved Ile&gt;Met recoding in gene <i>Syt1</i>. In the light of evolution, we established a comparative genomic approach for quantitatively justifying the adaptiveness of individual editing sites. Priority should be given to such adaptive editing sites in future functional studies.
DOI: 10.6084/m9.figshare.24961282
title: An Information Acquisition Approach on How Young Adults Search for Mental Health Professionals

description: Using a computer-based, information acquisition process tracing task (MouselabWEB), participants (<i>N</i> = 100) were presented with varying types and amounts of information and were tasked with choosing a mental health professional (MHP). Results of this lab-based study indicated that the tendency to engage in heuristically-driven decision-making process increases as MHP choice and cognitive burden increases. When MHP choices are limited, participants tend to acquire information on MHP’s age, treatment orientation, education, and years of experience. As MHP choices increase, MHP gender and ethnicity information were utilized the most, and education and years of experience utilized the least.
DOI: 10.6084/m9.figshare.24961282.v1
title: An Information Acquisition Approach on How Young Adults Search for Mental Health Professionals

description: Using a computer-based, information acquisition process tracing task (MouselabWEB), participants (<i>N</i> = 100) were presented with varying types and amounts of information and were tasked with choosing a mental health professional (MHP). Results of this lab-based study indicated that the tendency to engage in heuristically-driven decision-making process increases as MHP choice and cognitive burden increases. When MHP choices are limited, participants tend to acquire information on MHP’s age, treatment orientation, education, and years of experience. As MHP choices increase, MHP gender and ethnicity information were utilized the most, and education and years of experience utilized the least.
DOI: 10.6084/m9.figshare.22317791
title: Dinosaur tracks from the Frontier Formation, Montana: preservation, distribution and palaeoecological significance for the middle Cretaceous terrestrial ecosystems of North America

description: The Coniacian-Santonian stages in western North America are characterized by a sparse fossil record. We present here the first account of dinosaur tracks from nine sites in the Frontier Formation (Coniacian-Santonian) of southwestern Montana. Tracks are largely preserved in distal alluvial facies as sandstone casts, with a single example of shallow epirelief impression interpreted as undertrack. Sandstone casts show significant relief, kinematic features (i.e., scale marks), and variable morphologies, arguing for a strong substrate control on their preservation. Putative producers are assigned to ornithopod, ankylosaurian, and theropod dinosaurs in decreasing order of abundance. This record reflects a composition similar to those of other middle Cretaceous formations in North America. Moreover, ankylosaurian tracks of the Frontier Formation represent the first known from Coniacian strata in North America. The incorporation of body and trace fossils yielded by the Frontier Formation indicates the presence of a fauna with North American endemic elements. The establishment of Coniacian-Santonian dinosaurian palaeocommunities akin to those observed in Campanian and Maastrichtian formations may reflect the trend towards provincialism attested for the end of the Mesozoic in North America.
DOI: 10.6084/m9.figshare.22317791.v1
title: Dinosaur tracks from the Frontier Formation, Montana: preservation, distribution and palaeoecological significance for the middle Cretaceous terrestrial ecosystems of North America

description: The Coniacian-Santonian stages in western North America are characterized by a sparse fossil record. We present here the first account of dinosaur tracks from nine sites in the Frontier Formation (Coniacian-Santonian) of southwestern Montana. Tracks are largely preserved in distal alluvial facies as sandstone casts, with a single example of shallow epirelief impression interpreted as undertrack. Sandstone casts show significant relief, kinematic features (i.e., scale marks), and variable morphologies, arguing for a strong substrate control on their preservation. Putative producers are assigned to ornithopod, ankylosaurian, and theropod dinosaurs in decreasing order of abundance. This record reflects a composition similar to those of other middle Cretaceous formations in North America. Moreover, ankylosaurian tracks of the Frontier Formation represent the first known from Coniacian strata in North America. The incorporation of body and trace fossils yielded by the Frontier Formation indicates the presence of a fauna with North American endemic elements. The establishment of Coniacian-Santonian dinosaurian palaeocommunities akin to those observed in Campanian and Maastrichtian formations may reflect the trend towards provincialism attested for the end of the Mesozoic in North America.
DOI: 10.6084/m9.figshare.22682930
title: The Late Miocene hippopotamid, <i>Archaeopotamus pantanellii</i> nov. comb., from the Casino Basin (Tuscany, Italy): paleobiogeographic implications

description: Fossil remains from the latest Messinian of Casino Basin (Tuscany, Italy) are known since the beginning of the nineteenth century. Among the others, the mammal assemblage includes <i>Mesopithecus pentelicus, Tapirus arvernensis, Propotamochoerus provincialis</i> and scarce and poorly preserved remains of a hippopotamid, consisting of a mandibular symphysis fragment, an apical fragment of a lower canine, some isolated lower incisors, a fragmented second upper premolar and a second lower molar. These specimens were initially referred as <i>Hippopotamus hipponensis</i> and later ascribed to the new species <i>Hippopotamus pantanellii</i> (recently reported as <i>Hexaprotodon? pantanellii</i>). However, this attribution has been disputed during the past years. The hippopotamid remains from the Casino Basin are revised here in order to clarify their systematic position and to infer paleobiogeographic and evolutionary patterns within the Mediterranean fossil record of Hippopotamidae. The morphology of the remains collected from the Casino Basin more closely resembles the African than the Asian hippopotamids’ lineage and therefore the Tuscan remains should be more properly referred as <i>Archaeopotamus pantanellii</i>. The latter species probably dispersed into Tuscany from the Iberian Peninsula where the presence of <i>Archaeopotamus crusafonti</i> is well documented.
DOI: 10.6084/m9.figshare.22682930.v1
title: The Late Miocene hippopotamid, <i>Archaeopotamus pantanellii</i> nov. comb., from the Casino Basin (Tuscany, Italy): paleobiogeographic implications

description: Fossil remains from the latest Messinian of Casino Basin (Tuscany, Italy) are known since the beginning of the nineteenth century. Among the others, the mammal assemblage includes <i>Mesopithecus pentelicus, Tapirus arvernensis, Propotamochoerus provincialis</i> and scarce and poorly preserved remains of a hippopotamid, consisting of a mandibular symphysis fragment, an apical fragment of a lower canine, some isolated lower incisors, a fragmented second upper premolar and a second lower molar. These specimens were initially referred as <i>Hippopotamus hipponensis</i> and later ascribed to the new species <i>Hippopotamus pantanellii</i> (recently reported as <i>Hexaprotodon? pantanellii</i>). However, this attribution has been disputed during the past years. The hippopotamid remains from the Casino Basin are revised here in order to clarify their systematic position and to infer paleobiogeographic and evolutionary patterns within the Mediterranean fossil record of Hippopotamidae. The morphology of the remains collected from the Casino Basin more closely resembles the African than the Asian hippopotamids’ lineage and therefore the Tuscan remains should be more properly referred as <i>Archaeopotamus pantanellii</i>. The latter species probably dispersed into Tuscany from the Iberian Peninsula where the presence of <i>Archaeopotamus crusafonti</i> is well documented.
DOI: 10.5281/zenodo.10808967
title: Mangroves as nature-based mitigation for ENSO-driven compound flood risks in a large river delta: supporting data - high water levels

description: This dataset contains modelled high water levels in the Guayas delta supporting the paper 'Mangroves as nature-based mitigation for ENSO-driven compound flood risks in a large river delta' published in HESS 2024.

The dataset is organised through two folders:



mangroves: all data from the scenarios with mangroves included in the domain

no_mangroves: all data from the scenarios without mangroves included in the domain


Each folder is further divided along 6 subfolders:



I: El Niño Ocean & river

II: El Niño Ocean

III: El Niño river

IV: Neutral

I_50per: 50 % increase in seaward El Niño anomalies

I_150per: 150 % increase in seaward El Niño anomalies


Each folder contains two files:



vars.csv - each row represents a mesh node and there are three columns:



X: x value of the model mesh node [m]

Y: y value of the model mesh node [m]

HIGH_WATER: high water level [m]
DOI: 10.5281/zenodo.10808968
title: Mangroves as nature-based mitigation for ENSO-driven compound flood risks in a large river delta: supporting data - high water levels

description: This dataset contains modelled high water levels in the Guayas delta supporting the paper 'Mangroves as nature-based mitigation for ENSO-driven compound flood risks in a large river delta' published in HESS 2024.

The dataset is organised through two folders:



mangroves: all data from the scenarios with mangroves included in the domain

no_mangroves: all data from the scenarios without mangroves included in the domain


Each folder is further divided along 6 subfolders:



I: El Niño Ocean & river

II: El Niño Ocean

III: El Niño river

IV: Neutral

I_50per: 50 % increase in seaward El Niño anomalies

I_150per: 150 % increase in seaward El Niño anomalies


Each folder contains two files:



vars.csv - each row represents a mesh node and there are three columns:



X: x value of the model mesh node [m]

Y: y value of the model mesh node [m]

HIGH_WATER: high water level [m]
DOI: 10.5519/qd.u3i49fkz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.22008/fk2/pi4gxi/xhlmrx
title: S2 Mertz 1924 Data Table 2024.xlsx

description: :unav
DOI: 10.22008/fk2/pi4gxi/8y5bqq
title: S5 Figure 1 - Mertz 1924 Isolines.pdf

description: :unav
DOI: 10.22008/fk2/pi4gxi/l63bzc
title: S1 Mertz 1924 Data Table 2024.csv

description: :unav
DOI: 10.22008/fk2/pi4gxi/fztcry
title: S3 Mertz 1924 Map Original.png

description: :unav
DOI: 10.22008/fk2/pi4gxi/8mk8k1
title: S6 Figure 2 - New Isolines.pdf

description: :unav
DOI: 10.22008/fk2/pi4gxi/fcwcck
title: S7a Mertz 1924 Points.gpkg

description: :unav
DOI: 10.22008/fk2/pi4gxi/lg4k8p
title: S4 Mertz 1924 Map 2024.pdf

description: :unav
DOI: 10.22008/fk2/pi4gxi/erp0gs
title: S7b Mertz Isolines Yoldia.gpkg

description: :unav
DOI: 10.22008/fk2/pi4gxi/yyzka9
title: S7c Mertz Isolines Litorina.gpkg

description: :unav
DOI: 10.6084/m9.figshare.21666881.v10
title: Embeddings of Wikipedia entities

description: Embeddings for 5.7 million entities in YAGO3, a large knowledge base derived from Wikipedia and other sources.<br>
<br>
<br>
<br>
<br>
These 200-dimensional embeddings can be used to enrich data analyses on common entities (cities, people, companies...). See: https://github.com/soda-inria/ken_embeddings<br>
<br>
<br>
<br>
<br>
The data contains the following files:<br>
<br>
<br>
<br>
<br>
- emb_all.parquet: embeddings for all entities of YAGO3 (5.7M)<br>
<br>
<br>
- emb_company.parquet: embeddings of companies<br>
<br>
<br>
- emb_movies.parquet: embeddings of movies<br>
<br>
<br>
- emb_album.parquet: embeddings of music albums<br>
<br>
<br>
- emb_school.parquet: embeddings of schools and universities<br>
<br>
<br>
<br>
<br>
- entity_types.parquet: simple type for each entity in YAGO3<br>
<br>
<br>
- entity_detailed_types.parquet: detailed types for each entity
<br>
DOI: 10.22008/fk2/pi4gxi/9qxnss
title: S7e New Isolines Litorina All Points.gpkg

description: :unav
DOI: 10.22008/fk2/pi4gxi/wyd1ec
title: S7d New Isolines Litorina.gpkg

description: :unav
DOI: 10.22008/fk2/pi4gxi/ozefw2
title: S7f Denmark Coastline.gpkg

description: :unav
DOI: 10.22008/fk2/pi4gxi/6nbjtm
title: S8 Mertz 1924 Isoline Processing Steps.txt

description: :unav
DOI: 10.5258/soton/d3019
title: Data supporting the University of Southampton Doctoral Thesis "Sustainability Accounting: The Case of Corporate Social Health Accounting and Reporting"

description: This data contains: first file of information on articles used for the first paper which is a review paper, thus details relating to the 106 papers reviewed are included. The second file contains data relating to the second paper on the effect of governance on health reporting and firm value. The third file contains data for the third paper which is about health reporting and tax avoidance. Subsequent sheets are various versions of the data used for the running additional analysis for the third paper, i.e. sub-samples for civil law countries, common law countries and international tax competitiveness moderations.
DOI: 10.5281/zenodo.10829992
title: The Genetic Background of Hearing Loss in Patients with EVA and Cochlear Malformation

description: This dataset comprises likely pathogenic variants identified through next-generation sequencing (NGS) using a multigene panel (237 genes associated with hearing loss), as well as clinical exome sequencing (TruSightOne Sequencing Panel). Raw data obtained during variant validation using Sanger sequencing method are also included. Furthermore, audiometric data are attached, from which the average air-conduction thresholds for ears with EVA malformation were determined.

 

Abstract manuscripts: 

The most frequently observed congenital inner ear malformation is enlarged vestibular aqueduct (EVA). It is often accompanied with incomplete partition type 2 (IP2) of the cochlea and a dilated vestibule, which together constitute Mondini malformation. Pathogenic SLC26A4 variants are considered the major cause of inner ear malformation but the genetics still needs clarification. The aim of this study was to identify the cause of EVA in patients with hearing loss (HL). Genomic DNA was isolated from HL patients with radiologically confirmed bilateral EVA (n = 23) and analyzed by next generation sequencing using a custom HL gene panel encompassing 237 HL-related genes or a clinical exome. The presence and segregation of selected variants and the CEVA haplotype (in the 5′ region of SLC26A4) was verified by Sanger sequencing. Minigene assay was used to evaluate the impact of novel synonymous variant on splicing. Genetic testing identified the cause of EVA in 17/23 individuals (74%). Two pathogenic variants in the SLC26A4 gene were identified as the cause of EVA in 8 of them (35%), and a CEVA haplotype was regarded as the cause of EVA in 6 of 7 patients (86%) who carried only one SLC26A4 genetic variant. In two individuals with a phenotype matching branchio-oto-renal (BOR) spectrum disorder, cochlear hypoplasia resulted from EYA1 pathogenic variants. In one patient, a novel variant in CHD7 was detected. Our study shows that SLC26A4, together with the CEVA haplotype, accounts for more than half of EVA cases. Syndromic forms of HL should also be considered in patients with EVA. We conclude that to better understand inner ear development and the pathogenesis of its malformations, there is a need to look for pathogenic variants in noncoding regions of known HL genes or to link them with novel candidate HL genes.
description: Contact details:  Prof. Monika Ołdak, head of the Genetics Department at the Institute of Physiology and Pathology of Hearing (m.oldak@ifps.org.pl)
DOI: 10.5281/zenodo.10829993
title: The Genetic Background of Hearing Loss in Patients with EVA and Cochlear Malformation

description: This dataset comprises likely pathogenic variants identified through next-generation sequencing (NGS) using a multigene panel (237 genes associated with hearing loss), as well as clinical exome sequencing (TruSightOne Sequencing Panel). Raw data obtained during variant validation using Sanger sequencing method are also included. Furthermore, audiometric data are attached, from which the average air-conduction thresholds for ears with EVA malformation were determined.

 

Abstract manuscripts: 

The most frequently observed congenital inner ear malformation is enlarged vestibular aqueduct (EVA). It is often accompanied with incomplete partition type 2 (IP2) of the cochlea and a dilated vestibule, which together constitute Mondini malformation. Pathogenic SLC26A4 variants are considered the major cause of inner ear malformation but the genetics still needs clarification. The aim of this study was to identify the cause of EVA in patients with hearing loss (HL). Genomic DNA was isolated from HL patients with radiologically confirmed bilateral EVA (n = 23) and analyzed by next generation sequencing using a custom HL gene panel encompassing 237 HL-related genes or a clinical exome. The presence and segregation of selected variants and the CEVA haplotype (in the 5′ region of SLC26A4) was verified by Sanger sequencing. Minigene assay was used to evaluate the impact of novel synonymous variant on splicing. Genetic testing identified the cause of EVA in 17/23 individuals (74%). Two pathogenic variants in the SLC26A4 gene were identified as the cause of EVA in 8 of them (35%), and a CEVA haplotype was regarded as the cause of EVA in 6 of 7 patients (86%) who carried only one SLC26A4 genetic variant. In two individuals with a phenotype matching branchio-oto-renal (BOR) spectrum disorder, cochlear hypoplasia resulted from EYA1 pathogenic variants. In one patient, a novel variant in CHD7 was detected. Our study shows that SLC26A4, together with the CEVA haplotype, accounts for more than half of EVA cases. Syndromic forms of HL should also be considered in patients with EVA. We conclude that to better understand inner ear development and the pathogenesis of its malformations, there is a need to look for pathogenic variants in noncoding regions of known HL genes or to link them with novel candidate HL genes.
description: Contact details:  Prof. Monika Ołdak, head of the Genetics Department at the Institute of Physiology and Pathology of Hearing (m.oldak@ifps.org.pl)