cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25625/h40b2l/bggwya
title: 41_reference.dm4

description: :unav
DOI: 10.25625/h40b2l/ewcuqq
title: 41_reference_post_acquisition.dm4

description: :unav
DOI: 10.25625/h40b2l/tn5jy2
title: 41_virtual_BF.dm4

description: :unav
DOI: 10.25625/h40b2l/ehp42z
title: 41_stack.dm4

description: :unav
DOI: 10.25625/h40b2l/dqrk4c
title: 42_reference_post_acquisition.dm4

description: :unav
DOI: 10.25625/h40b2l/sopxfo
title: 42_stack.dm4

description: :unav
DOI: 10.25625/h40b2l/3zhfyq
title: 42_virtual_BF.dm4

description: :unav
DOI: 10.14288/1.0378674
title: Dataset for: Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations

description: This dataset contains the data files and Matlab code required to replicate the figures and analysis presented in: Dal Co, van Vliet, Ackermann (2019) Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations. Philosophical Transactions B
DOI: 10.14288/1.0379269
title: Narratives in Ibadan Yoruba

description: This folder contains narratives from speakers of Ibadan Yoruba. The data were elicited at the University of Ibadan by students in LIY121 class, which was taught by Clement Oyeleke with the assistance of Samuel Akinbo and Emeka Onwuegbuzia. The narratives were recorded with a ZOOMH5 recorder at 48.1kHZ sampling rate in .wav. The data were transcribed by the students using ELAN (https://tla.mpi.nl/tools/tla-tools/elan/).
DOI: 10.14288/1.0389936
title: Quesnel Lake Physical Limnology Dataset (2005-2017)

description: Dataset of physical limnological observations from Quesnel Lake, British Columbia, Canada produced during research conducted into the impact of the 4 August 2014 Mount Polley mine tailings dam spill. Included are conductivity-temperature-depth (CTD) profiles from 2006-2017, and mooring timeseries from 2014-2017.
DOI: 10.14288/1.0379688
title: Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation

description: Supporting data for "Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation"
DOI: 10.14288/1.0397538
title: Data from: Flowering time of butterfly nectar food plants is more sensitive to temperature than the timing of butterfly adult flight

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;1. Variation among species in their phenological responses to temperature change suggests that shifts in the relative timing of key life cycle events between interacting species are likely to occur under climate warming. However, it remains difficult to predict the prevalence and magnitude of these shifts given that there have been few comparisons of phenological sensitivities to temperature across interacting species. 2. Here, we used a broad-scale approach utilizing collection records to compare the temperature sensitivity of the timing of adult flight in butterflies vs. flowering of their potential nectar food plants (days per °C) across space and time in British Columbia, Canada. 3. On average, the phenology of both butterflies and plants advanced in response to warmer temperatures. However, the two taxa were differentially sensitive to temperature across space vs. across time, indicating the additional importance of nontemperature cues and/or local adaptation for many species. 4. Across butterfly–plant associations, flowering time was significantly more sensitive to temperature than the timing of butterfly flight and these sensitivities were not correlated. 4. Our results indicate that warming-driven shifts in the relative timing of life cycle events between butterflies and plants are likely to be prevalent, but that predicting the magnitude and direction of such changes in particular cases is going to require detailed, fine-scale data.
DOI: 10.14288/1.0379775
title: Neurophotonics tutorial on making connectivity diagrams from Channelrhodopsin-2 stimulated data

description: &lt;p&gt;This package of sample data and matlab codes will process, filter, and average raw voltage sensitive dye images, generate a comprehensive connectivity matrix and a network diagram (as seen in Lim et al., 2012, 2014).&lt;/p&gt; &lt;p&gt;Requirements: Matlab (with Bioinformatics Toolbox and Brain Connectivity Toolbox)&lt;/p&gt; &lt;p&gt;Inputs: sample data; Matlab functions; Mask.tif (as included in .zip file)&lt;/p&gt; &lt;p&gt;Outputs: dF/F0(%) VSD connectivity matrix; Figure of network properties as a function of threshold levels; Network diagram&lt;/p&gt; &lt;p&gt; To use this package: &lt;ol&gt; &lt;li&gt;Unzip data files and ensure all Matlab functions are in the same directory as the NetworkAnalysis_VSD.m&lt;/li&gt; &lt;li&gt;Open NetworkAnalysis_VSD.m with Matlab&lt;/li&gt; &lt;li&gt;In NetworkAnalysis_VSD.m, enter the folder name where the data is stored (line 5)&lt;/li&gt; &lt;li&gt;Execute code.&lt;/li&gt; &lt;/ol&gt; &lt;/p&gt; &lt;p&gt; See corresponding articles: Lim et al.(2012). In vivo Large-Scale Cortical Mapping Using Channelrhodopsin-2 Stimulation in Transgenic Mice Reveals Asymmetric and Reciprocal Relationships between Cortical Areas. Front Neural Circuits 6:11. Lim et al.(2014). Optogenetic mapping after stroke reveals network-wide scaling of functional connections and heterogeneous recovery of the peri-infarct. J Neurosci 34:16455-16466. &lt;/p&gt; &lt;p&gt; See also: Brain connectivity toolbox: https://sites.google.com/site/bctnet/ Rubinov and Sporns (2010). Complex network measures of brain connectivity: uses and interpretations. Neuroimage 52:1059-1069. &lt;/p&gt; &lt;p&gt;Diana Lim and Jeffrey LeDue, University of British Columbia, 2015.&lt;/p&gt;
DOI: 10.14288/1.0379896
title: UBC Farm Soil Lab Results

description: This dataset contains results of laboratory analyses of UBC Farm soils starting in August 1999. Soil samples are predominantly collected annually by students in the Sustainable Soil Management course at UBC (APBI 402 / SOIL 502) and analyzed by Pacific Soils Analysis Inc (PSAI). The course instructors work with UBC Farm staff to determine which fields should be sampled each year, and the results inform management decisions at the Farm. Some samples have been collected through various other research and teaching activities, as well as by UBC Farm staff, and some samples have been analyzed by other laboratories. Methods information for each variable and laboratory will be provided in the metadata file.
DOI: 10.14288/1.0380180
title: Appendices for: Dairy Cattle Transition Period: Disease Prevalence and Risk Factors in Grazing and Freestall Systems (thesis) by Ruan Daros

description: On this file I combine all appendices and supplementary material related to my PhD thesis (available at http://hdl.handle.net/2429/71099). Please use READ.ME for more details.
DOI: 10.14288/1.0380834
title: Replication Data for: Lameness during the dry period: epidemiology and associated factors

description: Original data, R script (code) and code output for the paper published on Journal of Dairy Science. For best use, replicate analysis using R. Importing data using the .csv file may cause some variables (columns of the spreadsheet) to be imported with the wrong format. Any issues, do not hesitate in contact. Happy coding!
DOI: 10.14288/1.0380874
title: Model, code and source data for "Virtual signals of head rotation induce gravity-dependent inferences of linear acceleration"

description: This dataset contains data from participants' perceptions in different orientations relative to gravity under electrical vestibular stimulation (EVS), a computational model of central vestibular processing of EVS, and code used for analysis and visualization of experimental and model simulation outcomes. &lt;br&gt; &lt;br&gt;Instructions: &lt;br&gt;1- Download all data files and Matlab functions and ensure they are all in the same directory &lt;br&gt;2- Open EVS_Mechanistic_Model.m, Figure_5_Code.m or Figure_6_Code.m with Matlab &lt;br&gt;3- Make sure Matlab is currently in the folder where you put the files or add that folder to the path &lt;br&gt;4- Run the code
DOI: 10.14288/1.0384516
title: Replication Data for: The relationship between transition period diseases and lameness, feeding time, and body condition during the dry period

description: This file contains the original data used to run the statistical analysis for the paper "The relationship between transition period diseases and lameness, feeding time, and body condition during the dry period" by Daros et al., 2020 published in the Journal of Dairy Science. Here you will also find the supplementary material for the original publication and the code used to generate the supplementary material. Any issues, do not hesitate in contact. Happy coding!
DOI: 10.14288/1.0397673
title: Data from: Fitness costs in spatially structured environments

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The clustering of individuals that results from limited dispersal is a double-edged sword: while it allows for local interactions to be mostly among related individuals, it also results in increased local competition. Here I show that, because they mitigate local competition, fitness costs such as reduced fecundity or reduced survival are less costly in spatially structured environments than in non spatial settings. I first present a simple demographic example to illustrate how spatial structure weakens selection against fitness costs. Then, I illustrate the importance of disentangling the evolution of a trait from the evolution of potential associated costs, using an example taken from a recent study investigating the effect of spatial structure on the evolution of host defense. In this example indeed, the differences between spatial and non-spatial selection gradients are due to differences in the fitness costs, thereby undermining interpretations of the results made in terms of the trait only. This illustrates the need to consider fitness costs as proper traits in both theoretical and empirical studies.
DOI: 10.14288/1.0398023
title: Data from: Parallelism in adaptive radiations of experimental Escherichia coli populations

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Adaptive radiations are major contributors to species diversity. While the underlying mechanisms of adaptive radiations, specialization and trade-offs, are relatively well understood, the tempo and repeatability of adaptive radiations remain elusive. Ecological specialization can occur through the expansion into novel niches or through partitioning of an existing niche. To test how the mode of resource specialization affects the tempo and repeatability of adaptive radiations, we selected replicate bacterial populations in environments that promoted the evolution of diversity either through niche expansion or through niche partitioning, and in a third low-quality single-resource environment, in which diversity was not expected to evolve. Colony size diversity evolved equally fast in environments that provided ecological opportunities regardless of the mode of resource specialization. In the low quality environments, diversity did not consistently evolve. We observed the largest fitness improvement in the low quality environment and the smallest the glucose-limited environment. We did not observe a change in the rate of evolutionary change in either trait or environment, suggesting that the pool of beneficial mutations was not exhausted. Overall, the mode of resource specialization did not affect the tempo or repeatability of adaptive radiations. These results demonstrate the limitations of eco-evolutionary feedbacks to affect evolutionary outcomes.
DOI: 10.14288/1.0383230
title: UBC Farm Monthly Bird Surveys

description: Nature Vancouver, a not-for-profit charitable society based in Vancouver, BC, has conducted monthly bird surveys at UBC Farm since March 2007, in part to record the seasonal bird species over the year in nine different habitat areas of the Farm. Surveys occur on the third Sunday of the month starting at 8am (March to September) or 9am (October to February) and typically last two to three hours. Bird occurrences are recorded by genus and species, or when identification is not clear, then simply to genus. The nine stations of the farm include the market garden fields, the herb and flower gardens, the biodiversity hedgerows, and the forested portion of the farm. This data is also available on eBird under the ‘hotspot’ named &lt;a href = "https://ebird.org/canada/hotspot/L452312"&gt;Vancouver—UBC south campus Farm&lt;/a&gt;. &lt;br&gt; &lt;br&gt; Site-specific and georeferenced data is available for the nine habitat areas of UBC Farm. Please contact &lt;a href = "mailto:matthew.mitchell@ubc.ca"&gt;Dr. Matthew Mitchell&lt;/a&gt; to request this data.
DOI: 10.14288/1.0383287
title: Data for: Gas Transfer Velocities Evaluated Using Carbon Dioxide as a Tracer Show High Streamflow to Be a Major Driver of Total CO2 Evasion Flux for a Headwater Stream

description: This dataset contains direct in-situ measurements and modeled values of stream properties and air temperature of a steep, turbulent headwater stream in southwestern British Columbia, Canada, between November 2016 and June 2017. The dataset is associated with a study of CO&lt;sub&gt;2&lt;/sub&gt; evasion from experimental stream G-H in the University of British Columbia Malcolm Knapp Research Forest, which estimated gas transfer velocities of CO&lt;sub&gt;2&lt;/sub&gt; (&lt;i&gt;k&lt;/i&gt;&lt;sub&gt;CO2&lt;/sub&gt;) and CO&lt;sub&gt;2&lt;/sub&gt; evasion using an automated in situ CO&lt;sub&gt;2&lt;/sub&gt; tracer technique. &lt;br&gt; &lt;br&gt; &lt;i&gt;McDowellJohnson2018_continuousdata.tab&lt;/i&gt; contains continuous half-hourly stream data for the duration of the study period. &lt;br&gt; &lt;br&gt; &lt;i&gt;McDowellJohnson2018_injectiondata.tab&lt;/i&gt; contains averaged values of stream data associated with 38 one-hour injections of CO&lt;sub&gt;2&lt;/sub&gt;. &lt;br&gt; &lt;br&gt; &lt;b&gt;Continuous data variables:&lt;/b&gt; date-time, CO&lt;sub&gt;2&lt;/sub&gt; concentration, pH, water temperature, electrical conductivity, air temperature, stream discharge, stream depth, water velocity, modeled gas transfer velocity of CO&lt;sub&gt;2&lt;/sub&gt;, modeled gas transfer velocity of CO&lt;sub&gt;2&lt;/sub&gt; normalized to a Schmidt number of 600, dissolved oxygen concentration &lt;br&gt; &lt;br&gt; &lt;b&gt;Injection data variables:&lt;/b&gt; date-time, stream depth, gas transfer velocity of CO&lt;sub&gt;2&lt;/sub&gt;, gas transfer velocity of CO&lt;sub&gt;2&lt;/sub&gt; normalized to a Schmidt number of 600, stream discharge, water temperature, water velocity &lt;br&gt; &lt;br&gt; This work was conducted on the unceded, ancestral territories of the xʷməθkʷəy̓əm (Musqueam) and Katzie peoples.
DOI: 10.14288/1.0397843
title: Data from: Defining isoscapes in the Northeast Pacific as an index of ocean productivity

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Aim: &lt;/b&gt;We modeled isoscapes in the Northeast Pacific using satellite-based data with the main objective of testing if isoscapes defined by a few key parameters can be used as a proxy for secondary productivity.&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Location: &lt;/b&gt;Northeast (NE) Pacific; 46 – 60⁰N and 125 – 165⁰W.&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Time period: &lt;/b&gt;From 1998 to 2017 (ongoing).&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Major taxa studied: &lt;/b&gt;Zooplankton with a focus on large herbivores.&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Methods:&lt;/b&gt; Approximately 280 summer zooplankton samples were analyzed for Carbon (δ&lt;sup&gt;13&lt;/sup&gt;C) and Nitrogen (δ&lt;sup&gt;15&lt;/sup&gt;N) stable isotope (SI) ratios. Environmental conditions experienced by zooplankton organisms were extracted from satellite, in situ sensor and model databases. A generalized additive model approach was used to explain the spatial variability of δ&lt;sup&gt;13&lt;/sup&gt;C and δ&lt;sup&gt;15&lt;/sup&gt;N values and predict isoscapes.&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:11px;"&gt;&lt;b&gt;Results: &lt;/b&gt;Sea surface temperature (SST), sea level anomaly (SLA) and chlorophyll-&lt;i&gt;a&lt;/i&gt; concentration emerged as the significant SI predictors. Modelled isoscapes reproduced patterns observed in δ&lt;sup&gt;13&lt;/sup&gt;C and δ&lt;sup&gt;15&lt;/sup&gt;N value distribution, such as a decrease from the coast to offshore. The contribution of eddies in enhancing local production in the open ocean was also well captured by the models. In the central part of the NE Pacific higher SI values were correlated with higher large copepod biomass measured by the North Pacific Continuous Plankton Recorder (CPR) survey. However, in the area off the coast of British Columbia (BC) high δ&lt;sup&gt;15&lt;/sup&gt;N variability appeared to be associated with episodic intrusions of coastal waters demonstrating that caution is needed when interpreting sharp changes in SI ratios.&lt;/p&gt; &lt;p&gt;&lt;b&gt;Main conclusions: &lt;/b&gt;While the mechanisms driving SI ratio variability are complex, we demonstrated that a few parameters used as a proxy for some of these major mechanisms are able to successfully produce isoscape models. This approach was proven useful to provide a qualitative estimate of the secondary production, which can be particularly valuable in a region where few data are available.&lt;/p&gt;
DOI: 10.14288/1.0388355
title: UBC Farm Cover Crop Planting Records

description: This dataset contains records of cover crop planting at UBC Farm since 2018. Information includes crop types, field and bed locations and areas, and planting dates, rates, and weights. &lt;br&gt; &lt;br&gt; Please note that the UBC Farm’s data management practices have grown and evolved over time, and some forms of data have been consistently collected for more years than others. UBC Farm staff are also busy and imperfect humans and sometimes forget to log activities. On rare occasion, erroneous data may accidentally be entered, and these errors may not get corrected during quality control checks. While we do our best to ensure the data we release is complete and accurate, we provide this data to you “as is”, through the disclaimer in the CC BY-NC-SA 4.0 license.
DOI: 10.14288/1.0388570
title: UBC Farm Soil Amendment Records

description: This dataset contains records of soil amendment applications at UBC Farm since 2018. The “Soil Actions” dataset includes field location and area; crop and/or rotation group targeted; nutrient required and associated soil test result (detailed data available in UBC Farm Soil Lab Results); amendment name, nutrient percentage, and application rate; amendment amount needed and applied in field (if applied); and whether an amendment was applied. “Compost” dataset includes field and bed location; rotation group targeted; compost type; field area and volume of application; total weight and volume of nutrients; and whether the compost was applied. &lt;br&gt;&lt;br&gt; Please note that the UBC Farm’s data management practices have grown and evolved over time, and some forms of data have been consistently collected for more years than others. UBC Farm staff are also busy and imperfect humans and sometimes forget to log activities. On rare occasion, erroneous data may accidentally be entered, and these errors may not get corrected during quality control checks. While we do our best to ensure the data we release is complete and accurate, we provide this data to you “as is”, through the disclaimer in the CC BY-NC-SA 4.0 license.
DOI: 10.14288/1.0388571
title: UBC Farm Integrated Pest Management Records

description: This dataset contains UBC Farm integrated pest management records since 2018. Two types of data are present: pest observations (which are informal and incomplete) and actions (applications of pest control products and releases of beneficial insects). Other agronomic practices that contribute to pest control (such as pruning plants, cultivating soil, and physically removing pests) are not recorded here. &lt;br&gt;&lt;br&gt; Please note that the UBC Farm’s data management practices have grown and evolved over time, and some forms of data have been consistently collected for more years than others. UBC Farm staff are also busy and imperfect humans and sometimes forget to log activities. On rare occasion, erroneous data may accidentally be entered, and these errors may not get corrected during quality control checks. While we do our best to ensure the data we release is complete and accurate, we provide this data to you “as is”, through the disclaimer in the CC BY-NC-SA 4.0 license.
DOI: 10.34740/kaggle/dsv/11854704
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.wxbxvj
title: Occurrence Download

description: A dataset containing 369019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gavia arctica (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 369019 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004218-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9zvqm
title: Occurrence Download

description: A dataset containing 6429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Kalopanax Miq."
 ]
}

 The dataset includes 6429 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004221-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15454932
title: Waterfront Segmentation

description: 该数据集是为滨水环境的语义分割任务构建的高质量带注释数据集。采集于中国广西壮族自治区北海市及其周边海域和河岸。北海作为典型的亚热带沿海城市,滨水生态系统多样,人类活动场景复杂。该数据集覆盖了不同天气、光照和季节条件下的滨水图像,可以有效支持深度学习模型在复杂的自然和人工交互环境中的训练和验证。
DOI: 10.15468/dl.nv3g3h
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Geometry POLYGON((95.35277 -29.25579,131.64723 -29.25579,131.64723 -14.74421,95.35277 -14.74421,95.35277 -29.25579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Milyeringa veritas Whitley, 1945"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004222-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67kgrw
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonatum cirrhifolium (Wall.) Royle",
 "Country is Nepal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004223-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.