cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2wppzpkz43.2
title: Mineral transformations driven by Acidimicrobium sp. A6 increase the bioavailability of crystalline Fe oxides in co-cultures with Geobacter sulfurreducens

description: This dataset provides the numerical data used to generate all figures and tables in the manuscript by Park et al., titled “Mineral transformations driven by Acidimicrobium sp. A6 increase the bioavailability of crystalline Fe oxides in co-cultures with Geobacter sulfurreducens.”
DOI: 10.17632/3xk7kd5fd8
title: Distinct mechanisms of organic carbon accumulation in cropland and bare land under different nitrogen gradients revealed by a 16-year field experiment

description: 1. Research Hypotheses:
This study was designed to test the central hypothesis that the mechanisms governing soil organic carbon (SOC) accumulation differ under long-term nitrogen gradient fertilization between cropland and bare land in the Fluvo-Aquic soil region of the North China Plain.
2. Data Description:
This dataset comprises crop yield data collected annually from 2009 to 2025 across 21 experimental plots, alongside soil sample analysis data obtained in 2025 from 42 experimental plots. Key measured indicators include:
Soil Carbon Fractions: Soil Organic Carbon (SOC), Dissolved Organic Carbon (DOC), particulate organic carbon (POC), mineral-associated organic carbon (MAOC), nonprotected organic carbon (Non-C), physically protected organic carbon (Phy-C), chemically protected organic carbon (Che-C), biochemically protected organic carbon (Bio-C).
Other Soil Properties: Total Nitrogen (TN) and pH.
3. Notable Findings:
Our analysis revealed distinct regulatory pathways for SOC accumulation. In cropland systems, Bio-C exerted a dominant influence on POC, which subsequently governed SOC sequestration. Conversely, in bare land systems, the limited presence of Che-C attenuated the role of POC, resulting in MAOC serving as the principal regulator of SOC dynamics.
4. Data Interpretation and Reuse Potential:
The data are presented in a structured Excel format, readily accessible for statistical analysis. Users can leverage this dataset to compare the effects of nitrogen application rates and land use types on soil carbon pools and physicochemical properties. It is suitable for calibrating biogeochemical models, refining regional SOC stock estimates, and evaluating the efficacy of land management strategies aimed at enhancing soil carbon sequestration.
DOI: 10.17632/3xk7kd5fd8.1
title: Distinct mechanisms of organic carbon accumulation in cropland and bare land under different nitrogen gradients revealed by a 16-year field experiment

description: 1. Research Hypotheses:
This study was designed to test the central hypothesis that the mechanisms governing soil organic carbon (SOC) accumulation differ under long-term nitrogen gradient fertilization between cropland and bare land in the Fluvo-Aquic soil region of the North China Plain.
2. Data Description:
This dataset comprises crop yield data collected annually from 2009 to 2025 across 21 experimental plots, alongside soil sample analysis data obtained in 2025 from 42 experimental plots. Key measured indicators include:
Soil Carbon Fractions: Soil Organic Carbon (SOC), Dissolved Organic Carbon (DOC), particulate organic carbon (POC), mineral-associated organic carbon (MAOC), nonprotected organic carbon (Non-C), physically protected organic carbon (Phy-C), chemically protected organic carbon (Che-C), biochemically protected organic carbon (Bio-C).
Other Soil Properties: Total Nitrogen (TN) and pH.
3. Notable Findings:
Our analysis revealed distinct regulatory pathways for SOC accumulation. In cropland systems, Bio-C exerted a dominant influence on POC, which subsequently governed SOC sequestration. Conversely, in bare land systems, the limited presence of Che-C attenuated the role of POC, resulting in MAOC serving as the principal regulator of SOC dynamics.
4. Data Interpretation and Reuse Potential:
The data are presented in a structured Excel format, readily accessible for statistical analysis. Users can leverage this dataset to compare the effects of nitrogen application rates and land use types on soil carbon pools and physicochemical properties. It is suitable for calibrating biogeochemical models, refining regional SOC stock estimates, and evaluating the efficacy of land management strategies aimed at enhancing soil carbon sequestration.
DOI: 10.5281/zenodo.6850171
title: S32 | REACH2017 | >68,600 REACH Chemicals

description: A 2017 list of REACH chemicals including InChIKeys and spectral information, provided by N. Alygizakis and J. Slobodnik, EI. Dataset DOI: 10.5281/zenodo.2653020.

Update 14 Nov 2019: added CSV. Feb 6th, 2020: edited SMILES in CSV to remove \\ (fixed_SMILES column); edited more SMILES. Nov 6, 2020: fixed entry for (2H5)benzoic acid based on feedback from PubChem. 17 July 2022: more SMILES fixes (CSV only).
description: This dataset is currently in an uncurated state ...
DOI: 10.5281/zenodo.2653020
title: S32 | REACH2017 | >68,600 REACH Chemicals

description: A 2017 list of REACH chemicals including InChIKeys and spectral information, provided by N. Alygizakis and J. Slobodnik, EI. Dataset DOI: 10.5281/zenodo.2653020.

Update 14 Nov 2019: added CSV. Feb 6th, 2020: edited SMILES in CSV to remove \\ (fixed_SMILES column); edited more SMILES. Nov 6, 2020: fixed entry for (2H5)benzoic acid based on feedback from PubChem. 17 July 2022: more SMILES fixes (CSV only).
description: This dataset is currently in an uncurated state ...
DOI: 10.17632/gm98kv3ph3
title: Supplementary Table: The detailed treatment response of patients with calcinosis

description: The detailed treatment response of patients with calcinosis
DOI: 10.17632/gm98kv3ph3.1
title: Supplementary Table: The detailed treatment response of patients with calcinosis

description: The detailed treatment response of patients with calcinosis
DOI: 10.17632/7kr499dvrg.1
title: Immunogenetic diversity and haemosporidian parasitization in European bluethroats (Luscinia svecica): do diverse genes warrant fewer parasites?

description: The health and fitness of vertebrates are constantly challenged by environmental stresses, which include exposure to diseases that pose significant evolutionary pressures on immune genes. The bluethroat (Luscinia svecica), has been extensively studied for its haemosporidian parasite diversity across Europe showing a high diversity and prevalence rate. Given possible evolutionary pressure exerted by these pathogens, the present study used high-throughput amplicon sequencing to explore the genetic diversity and selection mechanisms of three immunity genes (MHC I exon 3, TLR3 and TLR4) in three European bluethroat populations. Specifically, we seek to (1) characterize the genetic diversity of these immunity genes, (2) detect selection signatures shaping their diversity, and (3) investigate the relationship between these immunity genes and haemosporidian parasites (Plasmodium and Leucocytozoon). Selection analysis was conducted using FUBAR and SLAC methods, whereas GLM regression was employed to explore the correlation between MHC genes and haemosporidian parasites. Despite geographical and ecological differences, nucleotide and haplotype diversities were similar across all populations. Most frequent haplotypes were found to be shared by both red-spotted (L. s. svecica) and white-spotted (L. s. cyanecula) bluethroat subspecies. The “insular” Krkonoše population, despite being biogeographically peripheral and experiencing minor inbreeding, did not show significantly reduced immunogenetic diversity. Selection analysis revealed a higher presence of purifying selection in TLR genes and a combination of purifying and diversifying selection in the MHC gene, reflecting their evolutionary constraints and functional importance, while haemosporidian parasite pressure was not a major driver of genetic diversity.
DOI: 10.57760/sciencedb.28227
title: Resonance parameters extracted from the SAMMY fit of the natCu resonance region yield.
title: natCu共振区产额SAMMY拟合提取的共振参数

description: This work is based on the Back-n of the China Spallation Neutron Source, using the TOF method and the C6D6 detector system. It conducts a measurement study on the neutron capture cross section of natural copper within the range of 1 ev to 1 Mev. We obtained relatively accurate results in the resonance region. The capture yield in the distinguishable resonance region was analyzed using R-matrix SAMMY fitting, and the resonance parameters were extracted.
description: This work is based on the Back-n of the China Spallation Neutron Source, using the TOF method and the C6D6 detector system. It conducts a measurement study on the neutron capture cross section of natural copper within the range of 1 ev to 1 Mev. We obtained relatively accurate results in the resonance region. The capture yield in the distinguishable resonance region was analyzed using R-matrix SAMMY fitting, and the resonance parameters were extracted.
DOI: 10.15468/dl.zc3uz6
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Prionailurus rubiginosus, Prionailurus rubiginosus phillipsi, Prionailurus rubiginosus rubiginosus, Prionailurus rubiginosus koladivius)"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005175-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnp446
title: Occurrence Download

description: A dataset containing 209912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alchemilla filicaulis filicaulis, Alchemilla filicaulis filicaulis, Alchemilla filicaulis vestita, Alchemilla filicaulis vestita, Anthericum ramosum, Anthericum dorsetii, Anthericum gracile, Anthericum non-scriptum, Anthericum ramosum fallax, Endogona ramosa, Liliago ramosa, Ornithogalum ramosum, Pessularia ramosa, Phalangites ramosus, Phalangium ramosum, Arabis alpina, Arabidium alpinum, Arabis albida, Arabis alpina alpina, Arabis alpina albida, Arabis alpina declinata, Arabis alpina ruderalis, Arabis cuneifolia, Arabis cuneifolia, Arabis declinata, Arabis janitrix, Arabis lechenfeldiana, Arabis merinoi, Arabis sicula, Arabis sicula, Asperugo procumbens, Asperugo alba, Asperugo alba, Asperugo erecta, Asperugo vulgaris, Asperugo vulgaris, Barbarea vulgaris, Arabis barbarea, Barbarea abortiva, Barbarea altaica, Barbarea altaica, Barbarea arcuata, Barbarea arcuata, Barbarea arcuata, Barbarea arcuata brachycarpa, Barbarea arcuata pubescens, Barbarea arcuata pinnatisecta, Barbarea arcuata pubescens, Barbarea augustana, Barbarea barbarea)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 209912 records from 1280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049398-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cs44q29
title: Data from: An endemic flora of dispersed spores from the Middle Devonian of Iberia

description: Diverse assemblages of dispersed spores have been recovered from Middle
 Devonian rocks in northern Spain, revealing a significant endemism in the
 flora. Middle Devonian Iberia was part of a relatively isolated island
 complex (Armorican Terrane Assemblage), separated by considerable tracts
 of ocean from Laurussia to the northwest and Gondwana to the southeast.
 The Middle Devonian deposits of the Cantabrian Zone of northern Spain are
 entirely marine and comprise a thick clastic unit sandwiched between
 extensive carbonate units. The clastic unit, the laterally equivalent
 Naranco, Huergas and Gustalapiedra formations of Asturias, León and
 Palencia Provinces, represents a nearshore-offshore transect across a
 marine shelf. This unit is also believed to encompass the Kačák Event, an
 important global extinction event. The recovered palynomorphs include
 marine (acritarchs, chitinozoans, scolecodonts) and terrestrial (spores)
 assemblages. These are abundant and well preserved, although of variable
 thermal maturity. Here, we describe the dispersed spores and consider
 their significance as regards biostratigraphy, palaeophytogeography and
 Kačák Event interpretation. The dispersed spores represent a single
 assemblage assignable to the lemurata-langii Assemblage Zone (lemurata
 Subzone) indicating a probable early (but not earliest) Givetian age.
 Signs of endemism include various taxa known only from this region, some
 taxa appearing to have discordant ranges compared with elsewhere, and the
 absence from Iberia of certain prominent taxa characteristic of coeval
 assemblages elsewhere, such as those with grapnel-tipped processes. The
 abrupt interruption of carbonate deposition, with a change to rapid
 deposition of thick clastic deposits, provides support for a monsoonal
 cause of the Kačák Event.
description: Askew, A. & Wellman,
 C. 2018 - Supplementary Chart S1 - Playa del TranqueruA StrataBugs chart of
 the palynology of the Playa del Tranqueru sectionAskew, A. & Wellman,
 C. 2018 - Supplementary Chart S2 - San Pedro de NoraA StrataBugs chart of
 the palynology of the San Pedro de Nora sectionAskew, A. & Wellman,
 C. 2018 - Supplementary Chart S3 - Crémenes-Las SalasA StrataBugs chart of
 the palynology of the Crémenes-Las Salas sectionAskew, A. & Wellman,
 C. 2018 - Supplementary Table S1 - Count dataCount data for every
 studied site. + denotes a species is present, but outside the 200 count;
 interpreted as rare.Askew, A. & Wellman,
 C. 2018 - Supplementary textGeology of investigated
 localities and sample details
DOI: 10.5061/dryad.4fc0gs6
title: Data from: Effect of the anther-smut fungus Microbotryum on the juvenile growth of its host Silene latifolia

description: Premise of the Study: Plant pathogens that form persistent systemic
 infections within plants have the potential to affect multiple plant life
 history traits, yet we tend to focus only on visible symptoms. Anther-smut
 disease of Silene latifolia caused by the fungus Microbotryum
 lychnidis-dioicae induces the anthers of its host to produce fungal spores
 in place of pollen, and the pathogen is primarily transmitted among
 flowering plants by pollinators. Nevertheless, most of its life cycle is
 spent in the asymptomatic vegetative phase and infection can also occur
 through spores falling on seedlings or non-flowering plants. The purpose
 of this study was to ask if the fungus also had an effect on its host
 plant in the juvenile vegetative phase prior to flowering as this is
 important for the disease dynamics in species where transmission to
 seedlings is commonplace. Methods: Two greenhouse experiments compared the
 juvenile growth of inoculated and uninoculated plants, and in one
 experiment disease status of the plants at flowering was determined. Key
 Results: Inoculated plants had shorter but more leaves, and reduced root
 mass at the early juvenile (pre-flowering) stage. Some of these effects
 were detectable in plants that were inoculated but showed no disease
 symptoms at flowering. Conclusions: These results show that pathogenic
 fungi can have endophyte-like effects even in the total absence of their
 typical and more charismatic symptoms, and conversely that the assessment
 of endophyte effects on the fitness of their hosts should include all
 stages of the host life-cycle.
description: Experiment 2. Root shoot
 dataThis lists in columns:
 plant (id number), status (whether control sham inoculated (H) or
 inoculated (I)), shoot (dry weight in g), root (dry weight in g). The
 plants were completely randomized, so there are no block
 assignments.Root shoot
 data.csvExperiment 1 Greenhouse
 dataThis is the data from
 the large Experiment 1 in the paper. The first sheet is all the data, the
 other sheets are subsets.The columns are explained in the READ ME file
 below.GH
 desktop data.xlsx
DOI: 10.5061/dryad.875j1k8
title: Data from: Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands

description: Mountain formation in Mexico has played an important role in the
 diversification of many Mexican taxa. The Trans-Mexican Volcanic Belt in
 particular has served as both a cradle of diversification and conduit for
 dispersal. We investigated the evolutionary history of the Isthmura bellii
 group of salamanders, a widespread amphibian across the Mexican highlands,
 using sequence capture of ultraconserved elements. Results suggest that
 the I. bellii group probably originated in southeastern Mexico in the late
 Miocene and later dispersed across the Trans-Mexican Volcanic Belt and
 into the Sierra Madre Occidental. Pre-Pleistocene uplift of the
 Trans-Volcanic Belt likely promoted early diversification by serving as a
 mesic land-bridge across central Mexico. These findings highlight the
 importance of the Trans-Volcanic Belt in generating Mexico’s rich
 biodiversity.
description: BEAST data
 setNexus file with
 concatenated UCE sequences. See ReadMe file to match sample names with
 species and locality.isthmuraUCE.nex
DOI: 10.5061/dryad.b5s2hn4
title: Data from: Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing

description: In recent years, new genome-wide marker systems have provided highly
 informative alternatives to low density marker systems for evaluating
 plant populations. To date, most apple germplasm collections have been
 genotyped using low-density markers such as simple sequence repeats
 (SSRs), whereas only a few have been explored using high-density
 genome-wide marker information. We explored the genetic diversity of the
 Pometum gene bank collection (University of Copenhagen, Denmark) of 349
 apple accessions using over 15,000 genome-wide single nucleotide
 polymorphisms (SNPs) and 15 SSR markers, in order to compare the strength
 of the two approaches for describing population structure. We found that
 119 accessions shared a clonal relationship with at least one other
 accession in the collection, resulting in the identification of 272 (78%)
 unique accessions. Of these unique accessions, over half (52%) share a
 first-degree relationship with at least one other accession. There is
 therefore a high degree of clonal and family relatedness in the Danish
 apple gene bank. We find significant genetic differentiation between Malus
 domestica and its supposed primary wild ancestor, M. sieversii, as well as
 between accessions of Danish origin and all others. Overall, we found
 strong concordance between analyses based on the genome-wide SNPs and the
 15 SSR loci. However, we argue that GBS is superior to traditional SSR
 approaches because it allowed the estimation of ploidy levels that were in
 accordance with flow cytometry results, and can be further exploited in
 genome-wide association studies (GWAS). Finally, we compare GBS with SSR
 for the purposes of characterizing a diverse apple gene bank and discuss
 the advantages and constraints of the two approaches.
description: Mapping to
 chromosomeMap positions for the
 reference genome reported in Velasco et al. 2010 are from v1.0 pseudo
 haplotype (https://www.rosaceae.org)Mapping_to_chromosome_map.csvSNP genotypesSNP genotype data for the 363 apple accessions. The accession number is the first number in each row.SNP_genotypes_ped.csvSSR-dataData from 15 SSR loci for the 484 Malus accessions included in Larsen et al. 2017 of which a subset in used in the present studyReadMe_file
DOI: 10.5281/zenodo.18337949
title: Global Waste Sector Dataset (1990–2050): Generation, Emissions, and Socioeconomic Drivers

description: Strategy planning for global climate goals requires structured, multisectoral data linking environmental pressures with socioeconomic drivers across time and geography. However, internationally harmonized, machine-actionable datasets integrating waste generation, waste-related greenhouse gas (GHG) emissions, and socioeconomic indicators remain scarce. This study provides a harmonized, AI-ready dataset to support global analyses of municipal solid waste (MSW) and associated emissions. This FAIR² dataset provides historical (1990–2020) and forecasted (2021–2050) national-level data for 43 countries, covering MSW generation, CO₂, CH₄, and N₂O emissions, GDP per capita (PPP), and population. Forecasts were generated using an ensemble of fixed-effects regression models and artificial neural networks informed by economic and demographic trends. By linking MSW, emissions, and socioeconomic drivers within a standardized structure, the dataset enables analyses including benchmarking, equity assessments, and decoupling analysis. While limited to national aggregates and subject to scenario uncertainty, the dataset complies with FAIR² principles, supporting reuse and traceability.
DOI: 10.5281/zenodo.18337950
title: Global Waste Sector Dataset (1990–2050): Generation, Emissions, and Socioeconomic Drivers

description: Strategy planning for global climate goals requires structured, multisectoral data linking environmental pressures with socioeconomic drivers across time and geography. However, internationally harmonized, machine-actionable datasets integrating waste generation, waste-related greenhouse gas (GHG) emissions, and socioeconomic indicators remain scarce. This study provides a harmonized, AI-ready dataset to support global analyses of municipal solid waste (MSW) and associated emissions. This FAIR² dataset provides historical (1990–2020) and forecasted (2021–2050) national-level data for 43 countries, covering MSW generation, CO₂, CH₄, and N₂O emissions, GDP per capita (PPP), and population. Forecasts were generated using an ensemble of fixed-effects regression models and artificial neural networks informed by economic and demographic trends. By linking MSW, emissions, and socioeconomic drivers within a standardized structure, the dataset enables analyses including benchmarking, equity assessments, and decoupling analysis. While limited to national aggregates and subject to scenario uncertainty, the dataset complies with FAIR² principles, supporting reuse and traceability.