cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6668828.v2
title: Electrical Resistivity Tomography, Time-Domain Electromagnetic and Seismic data from the Pian Grande di Castelluccio basin, epicentral area of the 30 October 2016 Mw 6.5 Norcia earthquake (central Italy)

description: This dataset contains electrical resistivity tomography (ERT), time-domain electromagnetic (TDEM) and passive seismic data we collected on December 2016, March 2017 and June 2017 in the Pian Grande di Castelluccio basin, epicentral area of the 30 October 2016 M<sub>w</sub> 6.5 Norcia earthquake (central Italy). <br>These data represent the core of a research paper by Villani, F., Sapia, V., Baccheschi, P., Civico,R., Di Giulio, G., Vassallo, M., et al. (2019).Geometry and structure of a fault-bounded extensional basin by integrating geophysical surveys and seismic anisotropy across the 30 October 2016 Mw 6.5 earthquake fault(central Italy): The Pian Grande di Castelluccio basin. <i>Tectonics</i>, 38, 26–48.https://doi.org/10.1029/2018TC005205 <br>The dataset is organized into 3 separate compressed folders (.zip format):1) <b>ert_data.zip</b> contains the original raw data (native .bin format of Syscal R2 instrument) of two electrical resistivity profiles T1 and T2, together with absolute elevation of electrodes;2) <b>seismic_data.zip</b> contains several folders, one for each portable seismic station we used (the recordings are in SAC format; location info is reported in a separate txt file);3) <b>tdem_data.zip</b> contains raw TDEM data in .GX7 format. <br>A "Read Me" .txt file is provided in each folder for further details.
DOI: 10.6084/m9.figshare.20382427.v1
title: Physiological parameters of tomato plants subjected to salinity and treated with brassinosteroid

description: Abstract The objective of this work was to evaluate the effects of brassinosteroid on chlorophyll a fluorescence parameters, the SPAD index, and leaf succulence in young tomato (Lycopersicon esculentum) plants under salt stress. The experimental design was a randomized complete block, in a 5×2 factorial arrangement - five levels of water salinity (0.5, 1.5, 3.0, 4.5, and 6.0 dS m-1) × two rates of 24-epibrassinolide (0 and 10-6 mol L-1 EBL). At 23 days, the treatment without EBL showed that the increase of water salinity reduced the maximum, primary, and effective photochemical efficiency of PSII, as well as the electron transport rate, the SPAD index, leaf succulence, total dry mass, and the stress tolerance index, but increased initial fluorescence and relative excess energy in PSII. With the increase of water salinity, in the EBL treatments, there was an increase in the effective photochemical efficiency of PSII, the electron transport rate, the SPAD index, leaf succulence, total dry mass, and the stress tolerance index. EBL promotes beneficial effects on PSII integrity, the chlorophyll index, and leaf succulence in young tomato plants subjected to salinity levels of up to 6.0 dS m-1 .
DOI: 10.6084/m9.figshare.24503917.v1
title: Supplementary Material for: Inverted Internal Limiting Membrane Flap VS. ILM Peeling for＜400μm Macular Hole: a meta-analysis and systematic review

description: Purpose: The inverted internal limiting membrane (ILM) flap technique was initially developed for the closure of large macular holes (MH). However, its efficacy in treating small holes has been a matter of debate. This study aimed to compare the anatomical and visual outcomes of vitrectomy (PPV) combined with the inverted ILM flap and ILM peeling in cases of small and medium-sized MHs. Methods: A meta-analysis was conducted by searching the relevant literature in databases, including PubMed, Web of Science, Embase, and Cochrane Library. The search included articles published from the inception of the databases up until January 2023. The inclusion criteria limited the studies to only experimental based research. The heterogeneity, publication bias, and sensitivity analysis were performed to ensure the statistical power and reliability of the analysis. Results: Five studies, including two RCTs and three non-randomized concurrent control trials (n-RCTs), comprising a total of 269 eyes, were analyzed. The results showed no significant difference in the MH closure rate between the two group (odds ratio (OR) = 0.29, 95% confidence interval (CI): 0.04-1.96, P = 0.33). Furthermore, there were no significant differences observed in visual acuity, external limiting membrane (ELM) and ellipsoid zone (EZ) integrity at 3 months (ELM OR = 0.88, EZ OR = 0.85) or 12 months (ELM OR = 0.96, EZ OR = 1.39) post-operation between the two groups. Conclusion: The surgical repair of MHs smaller than 400μm with ILM flap seem to be similar in VA improvement and anatomical recovery compared to the traditional technique.
DOI: 10.6084/m9.figshare.14375915.v1
title: Supplementary Material for: Temporal Variation in <b><i>Staphylococcus aureus</i></b> Protein A Genotypes from Nose and Skin in Atopic Dermatitis Patients

description: <b><i>Background:</i></b> <i>Staphylococcus aureus</i> colonization is associated with disease severity in patients with atopic dermatitis (AD). <b><i>Objective:</i></b> To investigate temporal variation in <i>S. aureus</i> protein A gene (<i>spa)</i>-types isolated from the nose and lesional skin and the correlation of <i>spa</i>-types with disease severity. <b><i>Results:</i></b> This study included 96 adult AD patients who were assessed at baseline (T0) and after a strict 2-week follow-up period (T1) in which treatment was standardized with a topical corticosteroid. Fifty-five different <i>spa</i>-types were detected in the nose and skin cultures. Seventy-three patients were colonized with <i>S. aureus</i> in the nasal cavity at both time points (persistent carriership), 59 of whom (81%) had identical <i>spa</i>-types over time. For skin samples, 42 (75%) of the 56 persistent skin carriers had identical <i>spa</i>-types over time. The same <i>spa</i>-type was carried in the nose and skin in 79 and 77% of the patients at T0 and T1, respectively. More severe disease was not associated with specific <i>spa</i>-types or with temporal variation in <i>spa</i>-type. <b><i>Conclusion:</i></b> <i>S. aureus</i> strains in AD are highly heterogeneous between patients. The majority of patients carry the same <i>spa</i>-type in the nose and skin without temporal variation, suggesting clonal colonization within individual patients. No predominant <i>spa</i>-type or temporal variation is associated with increased disease severity.
DOI: 10.6084/m9.figshare.21346536.v1
title: Table S2

description: Table S2
DOI: 10.6084/m9.figshare.21401964.v1
title: Data for Simulating Cultural Ignitions

description: Data used to simulate spatially and temporally spatially explicit cultural ignitions on a 264,399-ha landscape of Karuk Aboriginal Territory in northern California using a Monte Carlo procedure and ignition data from 1980-2016 on the same landscape.  
<br>
The cfrg point location dataset contains cultural fire regime group designations for the 326,182 points on which annual cultural ignitions were modeled. Point IDs have been randomized to protect culturally sensitive location information. 
<br>
The contemporary ignitions dataset contains data from the <br>
Spatial wildfire occurrence data for the United States (Short 2017) mapped within the study domain.
DOI: 10.6084/m9.figshare.27977577.v2
title: Anti-inflammatory effect of Angiotensin 1-7 in white adipose tissue

description: This dataset includes all data included in the "Anti-inflammatory effect of Angiotensin 1-7 in white adipose tissue" paper by Nishida et al, 2024.<br>
DOI: 10.6084/m9.figshare.3551556.v1
title: Supplement 1. Examples of R code to fit models.

description: File List FalsePositiveLikelihoods.R<br> FPdatasets.Rdata Description The FalsePositiveLikelihoods.R file contains scripts for R (ver 2.12.1) to calculate each of the basic likelihoods presented in the paper. The script calls the example datasets FPdatasets.Rdata which give examples fitting the same data set using each of the models. The script also gives an example for estimating occupancy when detection is a function of a covariate (dist).
DOI: 10.6084/m9.figshare.21861975.v1
title: Gene expression csv files

description: Csv files containing all detectable genes.
DOI: 10.6084/m9.figshare.3560646.v1
title: Appendix A. Gap size and initial tree and liana biomass in the liana-removal and control gaps on Gigante Peninsula, Barro Colorado Nature Monument, Panama.

description: Gap size and initial tree and liana biomass in the liana-removal and control gaps on Gigante Peninsula, Barro Colorado Nature Monument, Panama.
DOI: 10.6084/m9.figshare.5122840.v1
title: Supplementary Material for: Upregulation of Nestin Protects Podocytes from Apoptosis Induced by Puromycin Aminonucleoside

description: <i>Background:</i> Nestin is an intermediate filament protein widely used as a marker of stem cells or progenitor cells. Nestin is also highly expressed in the glomerular podocyte, a type of terminally differentiated epithelial cell. Little is known about the significance of nestin in podocytes. <i>Methods:</i> Puromycin aminonucleoside (PAN) was injected into the rats to produce a PAN nephrosis model. Transmission electronic microscopy and terminal dUTP nick end-labeling assay were used to examine the podocyte foot process (FP) effacement and apoptosis, respectively. A mouse podocyte cell line was cultured and incubated with PAN. Immunoblot was used to examine the level of nestin expression both in vivo and in vitro. Enhanced green fluorescence protein-tagged plasmids containing nestin shRNA were transfected into the cultured podocytes to silence nestin expression. F-actin arrangement within cultured podocytes was investigated by immunofluorescence, while the apoptosis rate was examined by both Hoechst stain and flow cytometry. <i>Results:</i> In the PAN-induced rat nephrosis model, podocyte nestin expression was increased in the absence of apparent podocyte apoptosis, even though the FP was significantly effaced. In the cultured mouse podocytes, PAN upregulated nestin expression in a time-dependent manner within 24 h of treatment. Notably, no significant apoptosis occurred, however knocking down nestin expression resulted in a remarkable derangement of actin cytoskeleton and an increase in apoptosis in the cultured podocytes 24 h after being incubated with PAN. <i>Conclusions:</i> Upregulation of nestin expression during PAN nephrosis could protect podocytes from apoptosis and that this process is mediated by maintaining the regular arrangement of actin cytoskeleton.
DOI: 10.6084/m9.figshare.21206831.v2
title: 在线学习课程平台课程评论文本情感分析数据集

description: 这是一份包含4715条在线学业情绪的数据集。在这个数据集中，包含了：1. 序号；2. 分句：即通过主题标注划分分句后的所有分句；3.主题分类：对所有分句进行主题划分； 4.主题细化分类：对所有分句所在主题下进行进一步分类； 5.标注学业情绪（1）：第一位标注者对该分句的学业情绪标注结果；6.标注学业情绪（2）：第二位标注者对该分句的学业情绪标注结果；7. 标注学业情绪（3） ：第三位标注者对该分句的学业情绪标注结果；8. 最终学业情绪：在三位标注者的结果中，按多数标注结果作为最终标注结果。
DOI: 10.6084/m9.figshare.5121247.v1
title: Supplementary Material for: Effects of a High-Salt Diet on TRPV-1-Dependent Renal Nerve Activity in Dahl Salt-Sensitive Rats

description: <i>Objective:</i> To test the hypothesis that transient receptor potential vanilloid type 1 channel (TRPV1)-mediated increases in afferent renal nerve activity (ARNA) and release of substance P (SP) and calcitonin gene-related peptide (CGRP) from the renal pelvis are suppressed in Dahl salt-sensitive (DS), but not -resistant (DR), rats fed a high-salt (HS) diet. <i>Methods and Results:</i> Male DS and DR rats were given a HS or low-salt (LS) diet for 3 weeks. Perfusion of capsaicin (CAP, 10<sup>–6</sup><i>M</i>), a selective TRPV1 agonist, into the left renal pelvis increased ipsilateral ARNA in all groups, but with a smaller magnitude in DS-HS compared to other groups. CAP increased contralateral urine flow in all groups except DS-HS rats. CAP-induced release of SP and CGRP from the renal pelvis was less in DS-HS compared to other groups. Western blot showed that TRPV1 expression in the kidney decreased while expression of neurokinin 1 receptors increased in DS-HS compared to other groups. <i>Conclusion:</i> TRPV1-mediated increases in ARNA and release of SP and CGRP in the renal pelvis are impaired in DS rats fed a HS diet, which can likely be attributed to suppressed TRPV1 expression in the kidney and contributes to increased salt sensitivity.
DOI: 10.25403/upresearchdata.22353796.v1
title: Characterization and isolation of anti-HIV and latency reversal agents for the development of a herbal mixture

description: This is data for a descriptive research that describes the methods carried out on the latency reversal activity of <em>G. sericocephala </em>is found in supplementary data 1. The ultra-performance liquid chromatography tandem mass spectrometry spectral data of the solvent blank is shown in supplementary 2. Supplementary data 3 contains the ex vivo anti-HIV activity in PBMC’s. Supplementary data 4 is a summary of mean of Summary of mean potency values (IC50 ± S.D.), inhibition values at each test concentration, for the test samples, the positive control, verapamil, potency. All data in tables are expressed as mean inhibition or mean µM potency, from N ≥ 3 separate cells. The positive control value was within the acceptable potency range (0.2 - 0.8 µM). The tandem mass spectral data of lasioerin shown in supplementary 5. The nuclear magnetic resonance spectra of lasioerin are shown in supplementary data (6-11). The compound lasiocephalin nuclear magnetic spectral data is shown in supplementary data (12-15). Supplementary data 16 shows the tandem mass spectral data of yuanhuacine A. While the nuclear magnetic resonance spectroscopy is shown in supplementary data (17-23). The compound yuanhuacine mass spectral data is shown in supplementary data 24. While the nuclear magnetic resonance spectroscopic data of yuanhuacine is shown in supplementary data (25-30). The mass spectral data of cis 2′′/3′′ isomer of gnididin is shown in supplementary data (31). While the supplementary data of cis 2′′/3′′ isomer of gnididin is shown in supplementary data (32-37). The compound yuanhuajine has its mass spectral data shown in supplementary data 38. While the nuclear magnetic spectral data of cis 2′′/3′′ isomer of gnididin is shown in supplementary data (39-42). The mass spectral data of the compound gniditrin and its proton nuclear magnetic spectral data are shown in supplementary data 43 and 44, respectively.
DOI: 10.6084/m9.figshare.24850776.v1
title: Supplementary Material for: Combined prognostic impact of two quick frailty assessments in acute heart failure

description: Introduction: We aimed to investigate the prognostic impact of frailty (defined by the Study of Osteoporotic Fracture [SOF] index and the Clinical Frailty Scale [CFS]) in hospitalized patients with acute decompensated heart failure (HF).
Methods: A total of 1053 patients over 75 years of age, who were primarily admitted to hospital with a diagnosis of acute decompensated HF, were enrolled. The prognostic value of frailty by the two tools for predicting all-cause mortality was analyzed using multivariate Cox regression models.
Results: The incidence of frailty was 57.1% when using the SOF index, 37.6% when using the CFS, and 23.3% when using both tools. Frailty, via the SOF index or CFS, was an independent predictor of all-cause mortality in model 1, after adjustment for significantly associated factors by univariate analysis (hazard ratio [HR] 1.38, 95% confidence interval [CI] 1.04–1.84, P =0.027; HR 1.53, 95% CI 1.15–2.05, P =0.003, respectively), and in model 2, after adjustment for previously reported prognostic factors (HR 1.42, 95% CI 1.07–1.89, P =0.015; HR 1.56, 95% CI 1.17–2.07, P =0.002, respectively). Compared to non-frail patients, frail patients via both tools had a significantly higher incidence of all-cause mortality in models 1 (adjusted HR 2.16, 95% CI 1.42−3.29, P &lt;0.001) and 2 (adjusted HR 2.30, 95% CI 1.51−3.50, P &lt;0.001).
Conclusions: Combined frailty screening using the SOF index and CFS contributed to stratify the risk of mortality in patients with acute decompensated HF.
DOI: 10.6084/m9.figshare.24517204.v1
title: Solomos et al., Atmosphere, 2023 dataset

description: Dataset corresponding to <i>Solomos, S.; Spyrou, C.; Barreto, A.; Rodríguez, S.; González, Y.; Neophytou, M.K.A.; Mouzourides, P.; Bartsotas, N.S.; Kalogeri, C.; Nickovic, S.; et al. The Development of METAL-WRF Regional Model for the Description of Dust Mineralogy in the Atmosphere. Atmosphere 2023, 14, 1615. </i><i>https://doi.org/10.3390/</i><i> atmos14111615</i>
DOI: 10.6084/m9.figshare.9037493.v1
title: archaea.tar.gz

description: Archaeal metagenome-assembled genomes recovered from activated sludge
DOI: 10.6084/m9.figshare.11986764.v1
title: Dataset and code for figures

description: This zip file include the code and data used to generate the figures in Zhang et al (2020).
DOI: 10.6084/m9.figshare.17068538.v1
title: raw_data.zip

description: raw_data.zip file contains the Arabic alphabets and words hand written by 20 different users.
DOI: 10.6084/m9.figshare.5401828.v1
title: Supplementary Material for: ERAP1 and PDE8A Are Downregulated in Cattle Protected against Bovine Tuberculosis

description: Bovine tuberculosis (bTB) is a zoonotic disease caused by <i>Mycobacterium bovis</i> that is responsible for significant economic losses worldwide. In spite of its relevance, the limited knowledge about the host immune responses that provide effective protection against the disease has long hampered the development of an effective vaccine. The identification of host proteins with an expression that correlates with protection against bTB would contribute to the understanding of the cattle defence mechanisms against <i>M. bovis</i> infection. In this study, we found that <i>ERAP1</i> and <i>PDE8A</i> were downregulated in vaccinated cattle that were protected from experimental <i>M. bovis</i> challenge. Remarkably, both genes encode proteins that have been negatively associated with immune protection against bTB.
DOI: 10.6084/m9.figshare.13571090.v1
title: Data from "Diversification, disparification, and hybridization in the desert shrubs Encelia"

description: This dataset includes a few folders <code>morphological_data</code>: this folder contains morphological and physiological data summarized to the species level; column names closely align with those provided in Table S3 of the manuscript<code>gene_trees</code>: this folder contains gene trees inferred from 29K ddRAD loci. Tip names follow Table S1 of the manuscript. These are the gene trees used to infer the species tree presented in the paper.<code>concatenated</code>: this folder contains the concatenated alignment based on 31K loci and 3.9 Mb of data. Sample names follow Table S1 of the manuscript. This is the alignment used to infer the individual-level tree presented in the paper.<code>variants</code>: this folder contains a variant VCF file, one per lineage. These variant files were used to infer population genetic parameters.
DOI: 10.6084/m9.figshare.25714206.v2
title: "Siderophore utilization by dinoflagellates as a strategy for iron acquisition" data sets

description: Iron is a limiting nutrient for primary production in 30% of the global ocean, including the Southern Ocean. Dinoflagellates thrive in a wide variety of coastal and oceanic environments, including iron-limited regions. As iron is a biologically essential element for the growth and proliferation of marine algae, dinoflagellates may have evolved strategic mechanisms to combat iron limitation. Presently, these mechanisms have been scantly investigated in dinoflagellates. Here, we compare the growth response of the well-studied diatom Thalasiossira weissflogii to that of dinoflagellates Amphidinium carterae, Heterocapsa triquetra, and Symbiodinium tridacnidorum to different iron conditions: (a) iron-replete medium, (b) iron-limited medium, and (c) iron-limited medium supplemented with the siderophore Deferoxamine B (DFB). Preliminary observations suggest that A. carterae is able to assimilate iron bound to DFB, in contrast to T. weissflogii and Heterocapsa triquetra. A survey of the transcriptome of A. carterae suggests that it possess genes analogous to the TonB-dependent receptors (TBDRs) associated with iron-siderophore transport in prokaryotes. Additional species of dinoflagellates will be observed to investigate the ubiquity of this strategy in dinoflagellates. A more comprehensive understanding of dinoflagellate acclimation to low iron conditions is key to understanding their ecophysiology and the biogeochemical dynamics of iron-limited regions.
DOI: 10.6084/m9.figshare.26314723.v1
title: biosensors_de3_system.csv

description: Tables of three different systems containing the values of OD_600, fluorescence, specific fluorescence (Flu/OD, denoted as Phi), and their specific rates (normal rate for Phi measure). The tables also contain the time of measurement, the ammount of inductor, the strain and the repetition of each instance.
DOI: 10.6084/m9.figshare.27261753.v1
title: <b>Green light and tDCS in migraine patients; a randomized control trial</b>

description: Migraine is a complex neurological condition characterized by a range of symptoms, such as intense to severe headaches, sensitivity to light and sound, and feelings of nausea and vomiting. The most common complaints regarding acute treatment are that medication causes adverse effects that pain returns or that pain relief is either too slow or inconsistent. Certain non-pharmacological methods, such as non-invasive neuromodulators, might be beneficial for alleviating migraines and require evidence for clinical judgment.
DOI: 10.6084/m9.figshare.6553640.v1
title: Vespidae locus alignments

description: Zip folder containing multiple sequence alignments for all 378 loci.
DOI: 10.6084/m9.figshare.3544118.v1
title: Appendix C. A list of criteria for functional diversity indices tested on FDis.

description: A list of criteria for functional diversity indices tested on FDis.