cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pddzfm
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterophylla devogelii (H.C.Hopkins) Pillon & H.C.Hopkins"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083639-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xcbdw
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula davidii Franch."
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083640-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kt8unh
title: Occurrence Download

description: A dataset containing 4907 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Spermophilus citellus (Linnaeus, 1766)"
 ]
}

 The dataset includes 4907 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083645-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5287/ora-orkay0dem
title: Data for scientific paper: Emergency policies are not enough to resolve Amazonia’s fire crises.

description: Datasets of observed and predicted fire counts for the Brazilian Amazon from 2012 to 2021. Separate datasets for deforestation, pasture and forest fires.
DOI: 10.6084/m9.figshare.25526605
title: 20240403_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25526605.v1
title: 20240403_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.15468/dl.c8j6v4
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((98.65225 -2.33910,130.34775 -2.33910,130.34775 10.33910,98.65225 10.33910,98.65225 -2.33910))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rheithrosciurus macrotis (Gray, 1857)"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083644-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3725vh
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Gyrinops Gaertn."
 ]
}

 The dataset includes 346 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083647-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6vnkm
title: Occurrence Download

description: A dataset containing 1950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dianthus chinensis L.",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1950 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083641-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18167/dvn1/rirtot
title: A global database to quantify the impacts of agricultural management practices on terrestrial biodiversity

description: This dataset gathers mean effect sizes on the effects of agricultural management practices on biodiversity, extracted from a list of meta-analyses obtained with a systematic review process. We applied no geographical or temporal restriction. Details on the methods and content of the database is available in the associated DataPaper
DOI: 10.17632/yp9sxcn4b4.1
title: Nuclear pore complex proteins are involved in centromere distribution Ito et al.

description: The subnuclear distribution of centromeres is cooperatively regulated by condensin II and the linker of the nucleoskeleton and cytoskeleton (LINC) complex. However, it is likely that other nuclear membrane structures and nuclear proteins are involved in centromere dynamics and distribution. Here, we focused on the nuclear pore complex (NPC), which is known to regulate gene expression, transcription memory, and chromatin structure in addition to transport between the cytoplasm and nucleoplasm. We report here that some nucleoporins (Nups) including Nup85, Nup133, Nup43, CG1, Nup93b, and NUCLEAR PORE ANCHOR (NUA) are involved in centromere scattering in Arabidopsis thaliana. In addition, the centromere dynamics after metaphase in the nup85 mutant was found to be similar to that of the condensin II mutant. Furthermore, both biochemical and genetic approaches showed that Nup85 interacts with the LINC complex. These results suggest that Nups regulate centromere scattering cooperatively with condensin II and the LINC complex.
DOI: 10.15468/dl.evyrrk
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is one of (Australian Museum provider for OZCAM, Museums Victoria provider for OZCAM)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vombatus ursinus (Shaw, 1800)"
 ]
}

 The dataset includes 376 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083648-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwnwm5
title: Occurrence Download

description: A dataset containing 11378705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence, Living Specimen)",
 "Geometry POLYGON((6.44506 45.99642,7.04913 45.7496,7.98448 45.84053,8.3807 46.13283,8.673 45.76259,9.22511 45.73661,9.25109 46.01591,9.45245 46.20428,10.26438 46.10685,10.35532 46.37316,10.61514 46.44461,10.56967 47.05518,10.36831 47.15261,10.04354 47.15911,9.9526 47.36047,9.82269 47.51636,9.61484 47.69823,8.57556 47.93207,8.2378 47.75019,8.01046 47.78267,6.96469 47.63977,6.65291 47.26304,6.41908 47.13313,6.19173 46.81485,5.87346 46.607,5.89944 46.06138,6.44506 45.99642))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 11378705 records from 1166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083538-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/cfc99r8zpn.1
title: Hesitancy Dilemma Regarding Covid19 Vaccination

description: Systematic review article”
DOI: 10.25625/hkkcda/dv4rgn
title: parasitoid_comm_data.csv

description: Parasitoid wasp community data in the core plots and riparian plots of EFForTS project. The data was collected in 2017 using sweep net, yellow pan trap, and malaise trap.
DOI: 10.25625/hkkcda
title: Parasitoid Data B09 2017

description: Parasitoid wasp community data in the core plots and riparian plots of EFForTS project. The data was collected in 2017 using sweep net, yellow pan trap, and malaise trap.
DOI: 10.15468/dl.75vuzs
title: Occurrence Download

description: A dataset containing 103018368 records in GBIF matching the query:
SELECT datasetKey, countryCode FROM occurrence WHERE countryCode = 'NL'

 The dataset's 103018368 records were derived from 1336 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083080-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11401572
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/11401583
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.15468/dl.wfypas
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum plicatulum",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013685-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/v0exz-mwy87
title: B. diazoefficiens, hopanoids

description: WT strain, log phase
description: <strong>Tilt Series Date:</strong> 2019-11-06</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Bradyrhizobium diazoefficiens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> None</p>
<strong>Collaborators and Roles:</strong> Brittany Belin (Newman Lab, CalTech): strain construction, culture growth</p>
<strong>Purification / Growth Conditions / Treatment:</strong> log phase, treated with naringenin</p>
<strong>Sample Preparation:</strong> Broad vitrobot 22 degC, 100% humidity, manual back blotting. 4uL of 5X diluted cell (original O.D. 0.8). Quantifol copper R2/2 finder grid </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-11-06-17/rawdata/</p>WT_LG_64step2_14.mrc,  Tilt Series (Pixel Size 2.678 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3gdg0-5fs55
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-80/rawdata/</p>09aug01a_methanolgfmr1_080.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n831z-jw240
title: #4-60 BaxH6 Lysogen Ecoli phage

description: Bax delta H6 bigger hole Bax mutantBaxH6 Lysogen Ecoli lamdaphageMC4100[lamdadelta (SR)]
description: <strong>Tilt Series Date:</strong> 2013-07-12</p>
<strong>Data Taken By:</strong> Alasdair McDowall</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> raptor failed</p>
<strong>Collaborators and Roles:</strong> Xo Luo and Xiaming Pang  xuluo@unmc.edu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> see Xiamings notes</p>
<strong>Sample Preparation:</strong> Titan 26k 7/11/13  expo 0.9 150e- poor fudicials</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-07-12-4/rawdata/</p>B1_4-600004.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zjh5e-y7p38
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-79/rawdata/</p>09aug01a_methanolgfmr1_079.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wh085-37829
title: AimB depletion control w/ xylose

description: Raw data files of AimB depletion control w/ xylose
description: <strong>Tilt Series Date:</strong> 2009-09-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> The AimB_depletion strain was constructed by John Werner, data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> AimB depletion is achieved by serial exchanging media from that including 0.02% xylose to that including 0.3% glucose.</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-09-21-34/rawdata/</p>09sep21a_AimBxyl_052.mrc,  Tilt Series (Pixel Size 1.192 nm), 536.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/eabkf-2mh40
title: MT-MreB treated w/ aurothiogluco

description: Raw data files of MT-MreB treated w/ aurothiogluco
description: <strong>Tilt Series Date:</strong> 2009-07-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture and treatment by Zhuo Li. Data collected by Zhuo Li. Processed by Zhuo Li. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponentially growing MT310 cells were treated with 50 uM aurothioglucose for 20 hours before freezing. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-40/rawdata/</p>09jul21a_mtmrebaurothio_004.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k4s01-bkn65
title: AimB depletion w/ Glucose

description: Raw data files of AimB depletion w/ Glucose
description: <strong>Tilt Series Date:</strong> 2009-07-30</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The AimB depletion strain was constructed by John Werner in Zemer Gitai's lab. Depletion was done by Zhuo Li. Data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The AimB depletion strain was depleted serially with 0.2% glucose. </p>
<strong>Sample Preparation:</strong> 10 nm</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-30-9/rawdata/</p>09jul30a_AimBglu_009.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/akgpj-y8t12
title: MreB o/e 8hr single colony

description: Raw data files of MreB o/e 8hr single colony
description: <strong>Tilt Series Date:</strong> 2010-01-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Cells cultured and imaged by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Single colony was picked from a PYE plate w/ 0.2 glucose and cultured o/n. The next day cells were diluted to exponential phase and induced for 8hrs w/ 0.3% xylose.</p>
<strong>Sample Preparation:</strong> R2/2 or R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-41/rawdata/</p>10jan09a_MreBoe_041.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/br5gh-ssq83
title: liposomes + 0.5uL CdvA

description: tetraether liposomes from Sulfolobus cells + 0.5uL CdvA
description: <strong>Tilt Series Date:</strong> 2011-08-04</p>
<strong>Data Taken By:</strong> Megan Dobro</p>
<strong>Species / Specimen:</strong> tetraether liposomes + CdvA</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 8.0 eV/Å²,  defocus: -5.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> sent by Rachel Samson at Oxford University, purified by Parkson Lee-Gau Chong at Temple University</p>
<strong>Purification / Growth Conditions / Treatment:</strong> heavy vortexing for 10 mins at 80 C</p>
<strong>Sample Preparation:</strong> prepared by Parkson Lee-Gau Chong</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2011-08-04-2/rawdata/</p>liposomes05uLcdvA_34000x0001.mrc,  Tilt Series (Pixel Size 7.74 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.30019312
title: <b>Sound preferences in mice are sex-dependent</b>

description: We investigated the impact of early exposure to sound and to silence on sound preferences later in life in mice. We exposed young mice during the critical periods to excerpts of music (first movement of Beethoven’s symphony no. 9), non-music sounds, or to silence. We tested the sound preference behavior a few weeks later. Exposure affects mouse behavior in a sex-dependent manner: for example, male mice, but not female mice, exposed to silence show robust preference to silence relative to their naïve controls. The neural activity in auditory cortex is suppressed in mice exposed to either music or silence compared to naive controls. Remarkably, a robust negative correlation is found between neural response and sound preferences in female, but not in male, mice.
DOI: 10.6084/m9.figshare.30019312.v1
title: <b>Sound preferences in mice are sex-dependent</b>

description: We investigated the impact of early exposure to sound and to silence on sound preferences later in life in mice. We exposed young mice during the critical periods to excerpts of music (first movement of Beethoven’s symphony no. 9), non-music sounds, or to silence. We tested the sound preference behavior a few weeks later. Exposure affects mouse behavior in a sex-dependent manner: for example, male mice, but not female mice, exposed to silence show robust preference to silence relative to their naïve controls. The neural activity in auditory cortex is suppressed in mice exposed to either music or silence compared to naive controls. Remarkably, a robust negative correlation is found between neural response and sound preferences in female, but not in male, mice.