cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rruqjc
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyaloseris cinerea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 68 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009860-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18339084
title: SCOP Family Dataset 45-Dimension Physicochemical Encoded

description: This dataset contains the SCOP family dataset July 6, 2022 version.  That version which is no longer available now that SCOP has been migrated to EBI, appears to be identical to the June 29, 2022 version currently available at https://www.ebi.ac.uk/pdbe/scop/download with the exception of sorting.  The dataset includes six fields for each record and there are 35,644 records. The fields are "SCOPSFID", "SCOPSeqID", "SCOPFamID", "UNIAccNum", "Sequence" and "45D_Vector." The "45D_Vector" field contains 45 separate dimensions. Each dimension represents the amino acid sequence of the domain endcoded using a combinations of physicochemical properties. The conversion was made using the PCDTW45DConvert function of the PCDTW Python package available at https://pypi.org/project/PCDTW/. The vectors are in the following order: ('HydroPho', 'HydroPhIl'), ('HydroPho', 'Hbond'), ('HydroPho', 'SideVol'), ('HydroPho', 'Polarity'), ('HydroPho', 'Polarizability'), ('HydroPho', 'SASA'), ('HydroPho', 'NCI'), ('HydroPho', 'Mass'), ('HydroPhIl', 'Hbond'), ('HydroPhIl', 'SideVol'), ('HydroPhIl', 'Polarity'), ('HydroPhIl', 'Polarizability'), ('HydroPhIl', 'SASA'), ('HydroPhIl', 'NCI'), ('HydroPhIl', 'Mass'), ('Hbond', 'SideVol'), ('Hbond', 'Polarity'), ('Hbond', 'Polarizability'), ('Hbond', 'SASA'), ('Hbond', 'NCI'), ('Hbond', 'Mass'), ('SideVol', 'Polarity'), ('SideVol', 'Polarizability'), ('SideVol', 'SASA'), ('SideVol', 'NCI'), ('SideVol', 'Mass'), ('Polarity', 'Polarizability'), ('Polarity', 'SASA'), ('Polarity', 'NCI'), ('Polarity', 'Mass'), ('Polarizability', 'SASA'), ('Polarizability', 'NCI'), ('Polarizability', 'Mass'), ('SASA', 'NCI'), ('SASA', 'Mass'), ('NCI', 'Mass'), ('HydroPho', 'None'), ('HydroPhIl', 'None'), ('Hbond', 'None'), ('SideVol', 'None'), ('Polarity', 'None'), ('Polarizability', 'None'), ('SASA', 'None'), ('NCI', 'None'), ('Mass', 'None').
DOI: 10.5281/zenodo.18339083
title: SCOP Family Dataset 45-Dimension Physicochemical Encoded

description: This dataset contains the SCOP family dataset July 6, 2022 version.  That version which is no longer available now that SCOP has been migrated to EBI, appears to be identical to the June 29, 2022 version currently available at https://www.ebi.ac.uk/pdbe/scop/download with the exception of sorting.  The dataset includes six fields for each record and there are 35,644 records. The fields are "SCOPSFID", "SCOPSeqID", "SCOPFamID", "UNIAccNum", "Sequence" and "45D_Vector." The "45D_Vector" field contains 45 separate dimensions. Each dimension represents the amino acid sequence of the domain endcoded using a combinations of physicochemical properties. The conversion was made using the PCDTW45DConvert function of the PCDTW Python package available at https://pypi.org/project/PCDTW/. The vectors are in the following order: ('HydroPho', 'HydroPhIl'), ('HydroPho', 'Hbond'), ('HydroPho', 'SideVol'), ('HydroPho', 'Polarity'), ('HydroPho', 'Polarizability'), ('HydroPho', 'SASA'), ('HydroPho', 'NCI'), ('HydroPho', 'Mass'), ('HydroPhIl', 'Hbond'), ('HydroPhIl', 'SideVol'), ('HydroPhIl', 'Polarity'), ('HydroPhIl', 'Polarizability'), ('HydroPhIl', 'SASA'), ('HydroPhIl', 'NCI'), ('HydroPhIl', 'Mass'), ('Hbond', 'SideVol'), ('Hbond', 'Polarity'), ('Hbond', 'Polarizability'), ('Hbond', 'SASA'), ('Hbond', 'NCI'), ('Hbond', 'Mass'), ('SideVol', 'Polarity'), ('SideVol', 'Polarizability'), ('SideVol', 'SASA'), ('SideVol', 'NCI'), ('SideVol', 'Mass'), ('Polarity', 'Polarizability'), ('Polarity', 'SASA'), ('Polarity', 'NCI'), ('Polarity', 'Mass'), ('Polarizability', 'SASA'), ('Polarizability', 'NCI'), ('Polarizability', 'Mass'), ('SASA', 'NCI'), ('SASA', 'Mass'), ('NCI', 'Mass'), ('HydroPho', 'None'), ('HydroPhIl', 'None'), ('Hbond', 'None'), ('SideVol', 'None'), ('Polarity', 'None'), ('Polarizability', 'None'), ('SASA', 'None'), ('NCI', 'None'), ('Mass', 'None').
DOI: 10.15468/dl.tybgxj
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyaloseris salicifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 108 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009861-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.en5rjb
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119.1381 34.11777,-119.13967 34.08915,-118.81296 33.98502,-118.51923 34.04491,-118.52709 34.28665,-119.00616 34.29833,-119.1381 34.11777))",
 "HasGeospatialIssue is false",
 "Month is one of (March, April, May, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis latrans",
 "Year is 2017"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009862-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18363150
title: MEDAL Dataset: Evaluating Large Language Models for Evidence-Based Clinical Question Answering

description: MEDAL (Medical Evidence Discrepancy Assessment with LLMs) is a multi-source benchmark dataset for evaluating large language models (LLMs) on evidence-based clinical question answering.The dataset is constructed from three evidence streams: systematic reviews (Cochrane), structured recommendations (AHA guidelines), and narrative clinical guidelines.
DOI: 10.5281/zenodo.18363151
title: MEDAL Dataset: Evaluating Large Language Models for Evidence-Based Clinical Question Answering

description: MEDAL (Medical Evidence Discrepancy Assessment with LLMs) is a multi-source benchmark dataset for evaluating large language models (LLMs) on evidence-based clinical question answering.The dataset is constructed from three evidence streams: systematic reviews (Cochrane), structured recommendations (AHA guidelines), and narrative clinical guidelines.
DOI: 10.6084/m9.figshare.31144864
title: Table S1. List of Atlantic Forest endemic direct-developing frogs (Brachycephaloidea) and their conservation status.

description: Condez et al. Chapter 2: Conservation assessment of Atlantic Forest montane direct-developing anurans. In: Rais, M. (ed.). A Global Perspective on Recent Trends and Challenges in Amphibian Conservation. Springer Books, in press.
DOI: 10.6084/m9.figshare.31144864.v1
title: Table S1. List of Atlantic Forest endemic direct-developing frogs (Brachycephaloidea) and their conservation status.

description: Condez et al. Chapter 2: Conservation assessment of Atlantic Forest montane direct-developing anurans. In: Rais, M. (ed.). A Global Perspective on Recent Trends and Challenges in Amphibian Conservation. Springer Books, in press.
DOI: 10.15468/dl.72eymt
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroidea elsiae",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009863-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfzd6m
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nothrotheriops shastensis"
 ]
}

 The dataset includes 297 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009864-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anx9x8
title: Occurrence Download

description: A dataset containing 241 records in GBIF matching the query:
SELECT
 '341' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 28.773895969281842
 AND decimalLatitude &lt;= 33.06103686093294
 AND decimalLongitude &gt;= 5.413000888096007
 AND decimalLongitude &lt;= 11.132233086734905
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 241 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009858-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31141585
title: Peninsular Effect and Spatial Patterns of Taxonomic and Phylogenetic Bee Diversity in Southwestern USA and Northwestern Mexico

description: This repository contains the datasets and R scripts used in the analyses of "<i>Bee diversity across northwestern Mexico and the southwestern US</i>".Files:Appendix 1: Clean database used for ecological niche modelingAppendix 2: Supplementary TablesAppendix 3: Beta diversity, geographic and environmental pairwise distancesAppendix 4: Supplemantary FiguresAppendix 5: Clean R scripts ad project workflow (R scripts used for data processing and analyses)Appendix 6: Pruned MC50 concensus treeFor questions, contact: Diego de Pedro (diego38pecus@gmail.com; diego@cicese.edu.mx) or Angela Nava-Bolaños (anb@ciencias.unam.mx)
DOI: 10.6084/m9.figshare.31141585.v1
title: Peninsular Effect and Spatial Patterns of Taxonomic and Phylogenetic Bee Diversity in Southwestern USA and Northwestern Mexico

description: This repository contains the datasets and R scripts used in the analyses of "<i>Bee diversity across northwestern Mexico and the southwestern US</i>".Files:Appendix 1: Clean database used for ecological niche modelingAppendix 2: Supplementary TablesAppendix 3: Beta diversity, geographic and environmental pairwise distancesAppendix 4: Supplemantary FiguresAppendix 5: Clean R scripts ad project workflow (R scripts used for data processing and analyses)Appendix 6: Pruned MC50 concensus treeFor questions, contact: Diego de Pedro (diego38pecus@gmail.com; diego@cicese.edu.mx) or Angela Nava-Bolaños (anb@ciencias.unam.mx)
DOI: 10.15468/dl.y3etey
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenolepis gnidioides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 42 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009865-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18273101
title: Lichen_Planus
DOI: 10.5281/zenodo.18273102
title: Lichen_Planus
DOI: 10.15468/dl.hjwgg3
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenopappus tenuifolius",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 724 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009867-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/6jky9
title: Global prevalence and risk factors of equine piroplasmosis: A meta-analysis
DOI: 10.15468/dl.7gpgbg
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenostemma pseudanthemis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 27 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009868-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqfe5y
title: Occurrence Download

description: A dataset containing 1418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenoxys hoopesii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1418 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009869-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/4m58j
title: Prevalence of trypanosomiasis in Southeast Asia over two decades: A meta-analysis
DOI: 10.15468/dl.khu86w
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos",
 "Year 1995-2026"
 ]
}

 The dataset includes 461 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009870-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf9vjf
title: Occurrence Download

description: A dataset containing 242 records in GBIF matching the query:
SELECT
 '342' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 28.773895969281842
 AND decimalLatitude &lt;= 33.06103686093294
 AND decimalLongitude &gt;= 10.826001776192014
 AND decimalLongitude &lt;= 16.698349630102356
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 242 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009866-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsuenj
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyoseris lucida",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 66 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009871-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18363164
title: Plasma and breast milk lumefantrine data in breastfeeding mothers with Uncomplicated plasmodium falciparum malaria

description: This file provides first clinical data on the transfer of lumefantrine from maternal plasma to breastmilk in women with uncomplicated plasmodium falciparum malaria treated with Artemether-Lumefantrine. Since 2001, Artemether-Lumefantrine has been the World Health Organisation's recomended treatment for uncomplicated plasmodium falciparum malaria. This combination is widely used in the general population including, breastfeeding women. Lumefantrine is highly lipid soluble, has a long half-life, and is expected to distribute widely in lipophilic compartments, such as breastmilk.

Predictions of plasma-to-breastmilk transfer of lumefantrine, based on preclinical (rat) models and in silico Physiologically-Based Pharmacokinetic (PBPK) models, show inconsistent but generally high milk-to-plasma ratio (M:P>1.0). These predictions raise concern about the possibilty of toxic exposure of breastfeeding infants, or the risk of resistance development incase of infections at low concentratios. This observational clinical lactation pharmacokinetic study was undertaken in women diagnosed with uncomplicated plasmodium falciparum malaria. Here, we share results of an interim analysis from this study. 

From the six mothers included in the interim analysis, 78 plasma and 81 breastmilk samples were obtained. A wide inter-patient variability in lumefantrine concentration-time profiles was observed across different dose. Generally, both plasma and breastmilk concentrations increased across doses and plasma concentrations were consistently higher than breastmilk concentrations in paired plasma-breast milk samples, suggesting a milk-to-plasma ratio less than 1.0. Lumefantrine plasma and breastmilk concentrations were quantifiable upto 11 days after the last lumefantrine dose. These findings provide the first clinical evidence of lower and highly variable lumefantrine plasma-to-breast milk exposure, with the potential to support treatment recomendations and inform the refinement of lactation PBPK models.
DOI: 10.5281/zenodo.18363163
title: Plasma and breast milk lumefantrine data in breastfeeding mothers with Uncomplicated plasmodium falciparum malaria

description: This file provides first clinical data on the transfer of lumefantrine from maternal plasma to breastmilk in women with uncomplicated plasmodium falciparum malaria treated with Artemether-Lumefantrine. Since 2001, Artemether-Lumefantrine has been the World Health Organisation's recomended treatment for uncomplicated plasmodium falciparum malaria. This combination is widely used in the general population including, breastfeeding women. Lumefantrine is highly lipid soluble, has a long half-life, and is expected to distribute widely in lipophilic compartments, such as breastmilk.

Predictions of plasma-to-breastmilk transfer of lumefantrine, based on preclinical (rat) models and in silico Physiologically-Based Pharmacokinetic (PBPK) models, show inconsistent but generally high milk-to-plasma ratio (M:P>1.0). These predictions raise concern about the possibilty of toxic exposure of breastfeeding infants, or the risk of resistance development incase of infections at low concentratios. This observational clinical lactation pharmacokinetic study was undertaken in women diagnosed with uncomplicated plasmodium falciparum malaria. Here, we share results of an interim analysis from this study. 

From the six mothers included in the interim analysis, 78 plasma and 81 breastmilk samples were obtained. A wide inter-patient variability in lumefantrine concentration-time profiles was observed across different dose. Generally, both plasma and breastmilk concentrations increased across doses and plasma concentrations were consistently higher than breastmilk concentrations in paired plasma-breast milk samples, suggesting a milk-to-plasma ratio less than 1.0. Lumefantrine plasma and breastmilk concentrations were quantifiable upto 11 days after the last lumefantrine dose. These findings provide the first clinical evidence of lower and highly variable lumefantrine plasma-to-breast milk exposure, with the potential to support treatment recomendations and inform the refinement of lactation PBPK models.
DOI: 10.5281/zenodo.18363242
title: Why the word "Pic-nic" is cursed

description: Abstract

Black women in the United States experience a unique convergence of racialized and gendered harm that results in disproportionate exposure to violence, health deterioration, economic instability, and institutional abandonment.

This paper argues that the cumulative effects of these conditions meet criteria consistent with a threatened population when assessed through a functional lens drawn from conservation science and population health.

Using empirical findings from health disparities research, labor economics, sociology, trauma psychology, and socio-technical systems scholarship, this work reframes marginalization not as individual failure or cultural pathology, but as a systems-level extraction–discard cycle requiring structural intervention.
DOI: 10.5281/zenodo.18363243
title: Why the word "Pic-nic" is cursed

description: Abstract

Black women in the United States experience a unique convergence of racialized and gendered harm that results in disproportionate exposure to violence, health deterioration, economic instability, and institutional abandonment.

This paper argues that the cumulative effects of these conditions meet criteria consistent with a threatened population when assessed through a functional lens drawn from conservation science and population health.

Using empirical findings from health disparities research, labor economics, sociology, trauma psychology, and socio-technical systems scholarship, this work reframes marginalization not as individual failure or cultural pathology, but as a systems-level extraction–discard cycle requiring structural intervention.
DOI: 10.15468/dl.rn9kne
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypochaeris echegarayi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 65 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009873-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18259003
title: Data and code for "Understanding Landowners' Preferences to Participate in Tropical Mountain Forest Restoration"
DOI: 10.15468/dl.33dzev
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119.1381 34.11777,-119.13967 34.08915,-118.81296 33.98502,-118.51923 34.04491,-118.52709 34.28665,-119.00616 34.29833,-119.1381 34.11777))",
 "HasGeospatialIssue is false",
 "Month is one of (March, April, May, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis latrans",
 "Year is 2017"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009874-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18363255
title: The Black Women's Truth Ledger

description: A Documentation Framework for Truth, Protection, and Systems Change
DOI: 10.5281/zenodo.18363256
title: The Black Women's Truth Ledger

description: A Documentation Framework for Truth, Protection, and Systems Change