cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3772112_d2.v1
title: Additional file 2: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

description: iTRAQ serum gene ontology enrichment analysis. All proteins quantified in the serum via iTRAQ were analyzed using BiNGO and cytoscape on June 23, 2016. An over-representation analysis, hypergeometric test with a Benjamini & Hochberg False Discovery Rate (FDR) correction, was executed with a significance level of &lt;0.05. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3772130_d4.v1
title: MOESM13 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 13. R-Script 99_f_error-structure.R.
DOI: 10.6084/m9.figshare.c.3772130_d3
title: MOESM12 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 12. R-Script 03-02_model_application_exploratory.R.
DOI: 10.6084/m9.figshare.c.3772130_d5.v1
title: MOESM14 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 14. R-Script 99_f_predict_behavior_vigilance.R.
DOI: 10.6084/m9.figshare.c.3772118_d3.v1
title: Additional file 12: Table S6. of Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

description: Source of strains used in host range assays shown in Table 7. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3772130_d6.v1
title: MOESM15 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 15. R-Script 99_f_predict_state.R.
DOI: 10.6084/m9.figshare.c.3772130_d4
title: MOESM13 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 13. R-Script 99_f_error-structure.R.
DOI: 10.6084/m9.figshare.c.3772130_d5
title: MOESM14 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 14. R-Script 99_f_predict_behavior_vigilance.R.
DOI: 10.6084/m9.figshare.c.3772130_d6
title: MOESM15 of Remote monitoring of vigilance behavior in large herbivores using acceleration data

description: Additional file 15. R-Script 99_f_predict_state.R.
DOI: 10.6084/m9.figshare.c.3772118_d3
title: Additional file 12: Table S6. of Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

description: Source of strains used in host range assays shown in Table 7. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3772118_d4.v1
title: Additional file 1: Table S1. of Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

description: Assembly details and benchmarks for phages ZC01, ZC03 and ZC08 genomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3772118_d4
title: Additional file 1: Table S1. of Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

description: Assembly details and benchmarks for phages ZC01, ZC03 and ZC08 genomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3772943_d1
title: Additional file 1: of Cluster randomized evaluation of Adolescent Girls Empowerment Programme (AGEP): study protocol

description: AGEP Baseline Survey. (XLSX 2922 kb)
DOI: 10.6084/m9.figshare.c.3772961_d1.v1
title: Additional file 1: Table S1. of Overexpression of RKIP and its cross-talk with several regulatory gene products in multiple myeloma

description: Summary of Gene Product Overexpression/Underexpression in MM & Pre MM. (ZIP 294Â kb)
DOI: 10.6084/m9.figshare.c.3772961_d1
title: Additional file 1: Table S1. of Overexpression of RKIP and its cross-talk with several regulatory gene products in multiple myeloma

description: Summary of Gene Product Overexpression/Underexpression in MM & Pre MM. (ZIP 294Â kb)
DOI: 10.6084/m9.figshare.c.3772991_d1
title: Additional file 1 of Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems

description: VisId toolbox. This compressed folder contains the VisId MATLAB toolbox. (ZIP 1030 KB)
DOI: 10.6084/m9.figshare.c.3773000_d1.v1
title: Additional file 1: Table S1. of Dioxins and related environmental contaminants increase TDP-43 levels

description: (DOCX 36.4 kb)
DOI: 10.6084/m9.figshare.c.3773000_d1
title: Additional file 1: Table S1. of Dioxins and related environmental contaminants increase TDP-43 levels

description: (DOCX 36.4 kb)
DOI: 10.6084/m9.figshare.c.3773000_d2.v1
title: Additional file 2: Table S2. of Dioxins and related environmental contaminants increase TDP-43 levels

description: (DOCX 28.9 kb)
DOI: 10.6084/m9.figshare.c.3773039_d2.v1
title: Additional file 2: of Optimizing methods and dodging pitfalls in microbiome research

description: DNA sequences for gene block control samples. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3773039_d2
title: Additional file 2: of Optimizing methods and dodging pitfalls in microbiome research

description: DNA sequences for gene block control samples. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.28052417
title: Daily melt flux estimated from Antarctic automatic weather station data

description: Daily melt flux estimated from Antarctic automatic weather station data based on a surface energy balance model.The dataset comprises melt fluxes from 16 automatic weather stations in Antarctica.Melt fluxes from 10 IMAU stations were provided by Jakobs et al., (2022).Jakobs, C. L., Reijmer, C. H., Smeets, C. J. P. P., Trusel, L. D., Van De Berg, W. J., Van Den Broeke, M. R., & Van Wessem, J. M. (2020). A benchmark dataset of in situ Antarctic surface melt rates and energy balance. Journal of Glaciology, 66(256), 291–302. https://doi.org/10.1017/jog.2020.6<br>
DOI: 10.6084/m9.figshare.28052417.v1
title: Daily melt flux estimated from Antarctic automatic weather station data

description: Daily melt flux estimated from Antarctic automatic weather station data based on a surface energy balance model.The dataset comprises melt fluxes from 16 automatic weather stations in Antarctica.Melt fluxes from 10 IMAU stations were provided by Jakobs et al., (2022).Jakobs, C. L., Reijmer, C. H., Smeets, C. J. P. P., Trusel, L. D., Van De Berg, W. J., Van Den Broeke, M. R., & Van Wessem, J. M. (2020). A benchmark dataset of in situ Antarctic surface melt rates and energy balance. Journal of Glaciology, 66(256), 291–302. https://doi.org/10.1017/jog.2020.6<br>
DOI: 10.6084/m9.figshare.c.3773159_d1.v1
title: Additional file 10: Table S9. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Significant DE genes among comparisons between genetic lines. Genes in each category correspond to the numbers presented in the Venn diagram of Fig.Â 5. At each temperature the p-val and fold change are given. Genes highlighted in red were up regulated in the F line compared to the RBC2 in all significant comparisons, whereas those highlighted in green were down regulated. Genes highlighted in blue were upregulated in the F-line at one temperature and down regulated at another. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3773159_d1
title: Additional file 10: Table S9. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Significant DE genes among comparisons between genetic lines. Genes in each category correspond to the numbers presented in the Venn diagram of Fig.Â 5. At each temperature the p-val and fold change are given. Genes highlighted in red were up regulated in the F line compared to the RBC2 in all significant comparisons, whereas those highlighted in green were down regulated. Genes highlighted in blue were upregulated in the F-line at one temperature and down regulated at another. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3773168_d1.v1
title: Additional file 1: of Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

description: Table S1. SNP dataset with less than 50% loss. Table S2. SNP dataset with no gap. (XLS 27844 kb)
DOI: 10.6084/m9.figshare.c.3773168_d1
title: Additional file 1: of Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

description: Table S1. SNP dataset with less than 50% loss. Table S2. SNP dataset with no gap. (XLS 27844 kb)
DOI: 10.6084/m9.figshare.c.3773159_d2.v1
title: Additional file 1: Figure S1. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Box plot of normalized gene expression values for each of the 12 RNAseq libraries. Boxes denote upper and lower quartile with medians displayed as lines within the boxes. Figure S2. Hierarchical clustering of samples based on Euclidean distance reiterated relationships shown by PCA. The heat map below is based on experiment-wide normalized gene expression across all groups. Figure S3. Volcano plot showing the relationship between the ANOVA p-values and experiment-wise Log2 fold change for gene expression in p. major satellite cell transcriptomes during proliferation. Figure S4. Distribution of differentially expressed genes for cold (33 °C versus 38 °C) and hot (43 °C versus 38 °C) comparisons of each line (RBC2 and F) during p. major satellite cell proliferation. For each temperature comparison, the number of genes with FDR pval &lt;0.05 and |Log2FC| &gt; 2.0 that were shared or unique to each incubation temperature are indicated. (ZIP 2820 kb)
DOI: 10.6084/m9.figshare.c.3773159_d2
title: Additional file 1: Figure S1. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Box plot of normalized gene expression values for each of the 12 RNAseq libraries. Boxes denote upper and lower quartile with medians displayed as lines within the boxes. Figure S2. Hierarchical clustering of samples based on Euclidean distance reiterated relationships shown by PCA. The heat map below is based on experiment-wide normalized gene expression across all groups. Figure S3. Volcano plot showing the relationship between the ANOVA p-values and experiment-wise Log2 fold change for gene expression in p. major satellite cell transcriptomes during proliferation. Figure S4. Distribution of differentially expressed genes for cold (33 °C versus 38 °C) and hot (43 °C versus 38 °C) comparisons of each line (RBC2 and F) during p. major satellite cell proliferation. For each temperature comparison, the number of genes with FDR pval &lt;0.05 and |Log2FC| &gt; 2.0 that were shared or unique to each incubation temperature are indicated. (ZIP 2820 kb)
DOI: 10.6084/m9.figshare.c.3773159_d3.v1
title: Additional file 2: Table S1. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Mean quality-trimmed RNAseq read counts for turkey p. major muscle satellite cells from two lines (RBC2 and F) after 72 h proliferation. Cells were cultured at 33°, 38° or 43 °C. (XLSX 1807 kb)
DOI: 10.23673/re-497
title: Mapping boundaries: Microprosodic and dialectal variability in the perception of Estonian long and overlong quantity (DATA)

description: This repository contains the data and code for the paper Lippus, Pärtel, Liis Kask, Sofia Lutter, Nele Põldver, Kairi Kreegipuu. 2025. Mapping boundaries: Microprosodic and dialectal variability in the perception of Estonian long and overlong quantity. – Eesti Rakenduslingvistika Ühingu aastaraamat = Estonian Papers in Applied Linguistics 21. This paper presents the results of a web-based perception experiment that tested the distinction of long (Q2) and overlong (Q2) quantity degrees in Estonian. Firstly, we observe segmental quality effect on the quantity perception. The stimuli were created from words with 8 different segmental combinations. The second aim of this study is to map the dialectal variability in Estonian quantity perception. There has been some evidence that the listeners from East and South dialect areas are less sensitive to pitch cue than those from North and West. The current study was carried out with 290 participants with various regional background. The results showed that different segmental quality sets have slightly different Q2–Q3 category boundaries. Also, the precision of quantity identification was considerably lower in the case of nonsense word set. Unexpectedly, we were not able to find a clear dialectal background effect.
DOI: 10.6084/m9.figshare.c.3773159_d3
title: Additional file 2: Table S1. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Mean quality-trimmed RNAseq read counts for turkey p. major muscle satellite cells from two lines (RBC2 and F) after 72 h proliferation. Cells were cultured at 33°, 38° or 43 °C. (XLSX 1807 kb)
DOI: 10.6084/m9.figshare.c.3773159_d4.v1
title: Additional file 3: Table S2. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Normalized mean RNAseq read counts observed in p. major satellite cells from RBC2 and F line turkeys after 72 h proliferation when cultured at 38 °C. Genes are sorted in descending order by average number of reads. (XLSX 1448 kb)
DOI: 10.6084/m9.figshare.c.3773159_d7.v1
title: Additional file 6: Table S5. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: 50 genes showing the greatest differential expression in each pairwise comparison of treatment groups. Genes highlighted red are up-regulated in the comparison whereas genes highlighted in green are down-regulated. (XLSX 34Â kb)
DOI: 10.15468/dl.kbv68p
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.79984 42.33439,3.20783 42.33439,3.20783 42.58234,2.79984 42.58234,2.79984 42.33439))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Pallavicinia lyellii Steph, Kurzia sylvatica (A.Evans) Grolle, Pallavicinia lyellii (Hook.) Carruth., Pallavicinia lyellii (Hook.) Gray)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038680-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3773159_d4
title: Additional file 3: Table S2. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Normalized mean RNAseq read counts observed in p. major satellite cells from RBC2 and F line turkeys after 72 h proliferation when cultured at 38 °C. Genes are sorted in descending order by average number of reads. (XLSX 1448 kb)
DOI: 10.6084/m9.figshare.c.3773159_d6.v1
title: Additional file 5: Table S4. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Summary of pairwise differential gene expression (DESeq) analysis of p. major satellite cell transcriptomes. Comparisons highlighted in blue have significant FDR p-values (&lt;0.05) and |Log2FC| &gt; 2.0. Comparisons highlighted in brown have significant FDR p-values (&lt;0.05) but with |Log2FC|
DOI: 10.6084/m9.figshare.c.3773159_d6
title: Additional file 5: Table S4. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: Summary of pairwise differential gene expression (DESeq) analysis of p. major satellite cell transcriptomes. Comparisons highlighted in blue have significant FDR p-values (&lt;0.05) and |Log2FC| &gt; 2.0. Comparisons highlighted in brown have significant FDR p-values (&lt;0.05) but with |Log2FC|
DOI: 10.6084/m9.figshare.c.3773159_d7
title: Additional file 6: Table S5. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: 50 genes showing the greatest differential expression in each pairwise comparison of treatment groups. Genes highlighted red are up-regulated in the comparison whereas genes highlighted in green are down-regulated. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3773159_d10.v1
title: Additional file 9: Table S8. of Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

description: 10 most significant canonical pathways identified in IPA comparison analysis of DE genes. Included for each temperature comparison are the p-value, ratio and z-score for the RBC2 and F-line comparisons. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3774134_d3.v1
title: Additional file 3: of Effects of cold-acclimation on gene expression in Fall field cricket (Gryllus pennsylvanicus) ionoregulatory tissues

description: Spreadsheet S2. List of GO terms that were differentially represented in the hindgut and Malpighian tubules (MTs) following cold acclimation. Read counts of contigs associated with each GO term were summed for cold- and warm-acclimated crickets. Positive Î read counts (cold-acclimated cricket read counts minus warm-acclimated cricket read counts) indicate upregulation of a GO term in cold-acclimated crickets, while negative Î read counts indicate downregulation in cold-acclimated crickets. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3774158_d1
title: Additional file 10: Table S17. of FOXM1 expression is significantly associated with chemotherapy resistance and adverse prognosis in non-serous epithelial ovarian cancer patients

description: Differentially expressed genes in siFOXM1 EOC cells compared to siControl. (XLSX 100Â kb)
DOI: 10.6084/m9.figshare.c.3774134_d3
title: Additional file 3: of Effects of cold-acclimation on gene expression in Fall field cricket (Gryllus pennsylvanicus) ionoregulatory tissues

description: Spreadsheet S2. List of GO terms that were differentially represented in the hindgut and Malpighian tubules (MTs) following cold acclimation. Read counts of contigs associated with each GO term were summed for cold- and warm-acclimated crickets. Positive Î read counts (cold-acclimated cricket read counts minus warm-acclimated cricket read counts) indicate upregulation of a GO term in cold-acclimated crickets, while negative Î read counts indicate downregulation in cold-acclimated crickets. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3774137_d3.v1
title: Additional file 3: of Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

description: Alignment of 124 sequences from the Fpg family. See Methods for sequence selection and alignment details. (TXT 101Â kb)
DOI: 10.6084/m9.figshare.c.3774137_d3
title: Additional file 3: of Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

description: Alignment of 124 sequences from the Fpg family. See Methods for sequence selection and alignment details. (TXT 101Â kb)
DOI: 10.15468/dl.cn7s92
title: Occurrence Download

description: A dataset containing 3165 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EWT: Carnivore Conservation Programme Cheetah Tracking Data"
 ]
}

 The dataset includes 3165 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038681-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3774230_d1
title: MOESM10 of Estimation of single-year-of-age counts of live births, fetal losses, abortions, and pregnant women for counties of Texas

description: Additional file 10. This file contains aggregated abortions for the 254 counties of Texas for the year 2010.
DOI: 10.6084/m9.figshare.c.3774230_d2.v1
title: MOESM11 of Estimation of single-year-of-age counts of live births, fetal losses, abortions, and pregnant women for counties of Texas

description: Additional file 11. This file contains our estimated single-year-of-age abortions for the 254 counties of Texas for the year 2010.
DOI: 10.6084/m9.figshare.c.3774230_d2
title: MOESM11 of Estimation of single-year-of-age counts of live births, fetal losses, abortions, and pregnant women for counties of Texas

description: Additional file 11. This file contains our estimated single-year-of-age abortions for the 254 counties of Texas for the year 2010.
DOI: 10.6084/m9.figshare.c.3774230_d3.v1
title: MOESM12 of Estimation of single-year-of-age counts of live births, fetal losses, abortions, and pregnant women for counties of Texas

description: Additional file 12. This file contains our estimated single-year-of-age fractional pregnancy outcomes for the entire state of of Texas for the year 2010.
DOI: 10.15468/cvwpyu
title: Earthworm occurrences from Russian-language literature

description: This dataset is part of the project ‘Quantifying the factors limiting the distribution of earthworms in European Russia: a model approach’ founded by the Russian Science Foundation (23-24-00112, https://rscf.ru/en/project/23-24-00112/).
DOI: 10.48670/moi-00146
title: GLOBAL OCEAN ALONG-TRACK L3 SEA SURFACE HEIGHTS REPROCESSED (1993-ONGOING) TAILORED FOR DATA ASSIMILATION
DOI: 10.5281/zenodo.14247169
title: Accelerated Cell Type Evolution in the Human Brain
DOI: 10.6084/m9.figshare.28022315
title: Supplementary Material for: Outcome after Intraoperative Ejection of DMEK Graft: A Case Report

description: Purpose: There is no data on management of intraoperative ejection of a Descemet membrane endothelial keratoplasty (DMEK) graft. We report a case of graft survival after intraoperative ejection with long term endothelial cell counts and vision.
Case Presentation: A 64-year-old woman with Fuchs corneal dystrophy underwent DMEK in the right eye, during which the graft was completed ejected from the eye, and then recovered and reinjected successfully. She subsequently also underwent DMEK in the left eye without complication. The patient had recovery of vision in both eyes to 20/20 shortly after each surgery. There was much greater loss of endothelial cells in the eye which experienced graft ejection than the eye with routine DMEK surgery (79% vs 44%).
Conclusions: Our results support attempt to recover ejected DMEK graft if conditions are appropriate, but also show that there will be increased loss of endothelial cells as compared to routine surgery.