cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/e31a609ed6bde3a82c3dbd1dcc924413
title: Predicting aboveground and belowground processes in diverse forest ecosystems using remote sensing and in-situ measurements

description: The Forest and Biodiversity (FAB2) experiment uses native tree species in varying levels of species richness, phylogenetic diversity, and functional diversity planted in 100 m2 and 400 m2 plots at 1 m spacing, appropriate for testing long-term ecosystem consequences. FAB2 was designed and established in conjunction with a prior experiment (FAB1) in which the same set of twelve species was planted in 16 m2 plots at 0.5 m spacing. This data package examines the connections between aboveground and belowground processes in FAB2.
 
 This data package includes information on tree diversity and community composition, forest structure, forest understories, soil microbes, net nitrogen mineralization, and canopy nitrogen. A wide variety of data types are included, such as data from hyperspectral and LiDAR remote sensing, percent cover analysis, soil microbial analyses, and soil assays including C:N, pH, and net nitrogen mineralization. This data package is included in the submission of the manuscript entitled “Predicting aboveground and belowground processes in diverse forest ecosystems using remote sensing and in-situ measurements.”
DOI: 10.6084/m9.figshare.30505763
title: Chromosome-level genome assembly and annotation of <i>Nicotiana attenuata</i>

description: Natt_genome.fasta.gz -- The whole genome assembly of <i>N</i><i>icotiana attenuata</i>Natt_genes.gff3.gz -- GFF file of the coding genes identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_genome_repeats.gff.gz -- GFF file of the repeat regions identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_CDS.fasta.gz -- Predicted coding genes of <i>N</i><i>icotiana attenuata</i>Natt_aa.fasta.gz -- Predicted proteins of <i>N</i><i>icotiana attenuata</i>Natt_gene_annotations.tsv.gz -- eggNOG-mapper annotations of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genesNatt_UniRef90_mapping.tsv.gz -- Mapping result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genes against the UniRef90 databaseNatt_blastp.tsv.gz -- BLASTP result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>gene set with the <i>Nicotiana </i><i>a</i><i>ttenuata</i> gene set from previous study (Xu et al., PNAS 2017)
DOI: 10.6084/m9.figshare.30505763.v2
title: Chromosome-level genome assembly and annotation of <i>Nicotiana attenuata</i>

description: Natt_genome.fasta.gz -- The chromosome-level genome assembly of <i>N</i><i>icotiana attenuata</i>Natt_genes.gff3.gz -- GFF file of the coding genes identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_genome_repeats.gff.gz -- GFF file of the repeat regions identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_CDS.fasta.gz -- Predicted coding genes of <i>N</i><i>icotiana attenuata</i>Natt_aa.fasta.gz -- Predicted proteins of <i>N</i><i>icotiana attenuata</i>Natt_gene_annotations.tsv.gz -- eggNOG-mapper annotations of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genesNatt_UniRef90_mapping.tsv.gz -- Mapping result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genes against the UniRef90 databaseNatt_blastp.tsv.gz -- BLASTP result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>gene set with the <i>Nicotiana </i><i>a</i><i>ttenuata</i> gene set from previous study (Xu et al., PNAS 2017)
DOI: 10.6084/m9.figshare.30505763.v3
title: Chromosome-level genome assembly and annotation of <i>Nicotiana attenuata</i>

description: Natt_genome.fasta.gz -- The whole genome assembly of <i>N</i><i>icotiana attenuata</i>Natt_genes.gff3.gz -- GFF file of the coding genes identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_genome_repeats.gff.gz -- GFF file of the repeat regions identified in the <i>N</i><i>icotiana attenuata</i> genomeNatt_CDS.fasta.gz -- Predicted coding genes of <i>N</i><i>icotiana attenuata</i>Natt_aa.fasta.gz -- Predicted proteins of <i>N</i><i>icotiana attenuata</i>Natt_gene_annotations.tsv.gz -- eggNOG-mapper annotations of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genesNatt_UniRef90_mapping.tsv.gz -- Mapping result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>coding genes against the UniRef90 databaseNatt_blastp.tsv.gz -- BLASTP result of the <i>Nicotiana </i><i>a</i><i>ttenuata </i>gene set with the <i>Nicotiana </i><i>a</i><i>ttenuata</i> gene set from previous study (Xu et al., PNAS 2017)
DOI: 10.15468/dl.nk2que
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cleomella perennis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 36 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002179-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/ebs1dw
title: Data Management and Sharing Plan for: Specialized RNA analysis center for integrative genomic analyses

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.5281/zenodo.18432760
title: ФОРМИРОВАНИЕ ДУХОВНОСТИ СТУДЕНЧЕСКОЙ МОЛОДЁЖИ НА ОСНОВЕ ТРАДИЦИЙ ЛИТЕРАТУРНОЙ ПРЕЕМСТВЕННОСТИ

description: В данной статье с научной точки зрения анализируются традиции литературной преемственности, источники их формирования и их роль в развитии духовности студенческой молодёжи. Раскрывается органическая взаимосвязь между классической и современной литературой, преемственность художественно-эстетических взглядов, а также их воспитательное значение.
DOI: 10.5281/zenodo.18432761
title: ФОРМИРОВАНИЕ ДУХОВНОСТИ СТУДЕНЧЕСКОЙ МОЛОДЁЖИ НА ОСНОВЕ ТРАДИЦИЙ ЛИТЕРАТУРНОЙ ПРЕЕМСТВЕННОСТИ

description: В данной статье с научной точки зрения анализируются традиции литературной преемственности, источники их формирования и их роль в развитии духовности студенческой молодёжи. Раскрывается органическая взаимосвязь между классической и современной литературой, преемственность художественно-эстетических взглядов, а также их воспитательное значение.
DOI: 10.5281/zenodo.18432557
title: Supplementary Tables 1-4 supporting the manuscript "Intramuscular plasmid DNA electroporation sequesters neoantigen-specific CD8⁺ T cells at the vaccination site and limits tumor infiltration"

description: Data produced in the manuscript "Intramuscular plasmid DNA electroporation sequesters neoantigen-specific CD8⁺ T cells at the vaccination site and limits tumor infiltration":



Table S1. Results of differential gene expression analysis with DESeq2 normalized counts (Comparison Tumor M2h-EP vs Tumor Untreated)

Table S2. Results of GSEA enrichment analysis with fgsea (Comparison Muscle M2h-EP vs Muscle Untreated)

Table S3. Results of differential gene expression analysis with DESeq2 normalized counts (Comparison Muscle M2h-EP vs Muscle PBS-EP)

Table S4. Results of deconvolution analysis performed on all the 5 different experimental groups
DOI: 10.5281/zenodo.18432558
title: Supplementary Tables 1-4 supporting the manuscript "Intramuscular plasmid DNA electroporation sequesters neoantigen-specific CD8⁺ T cells at the vaccination site and limits tumor infiltration"

description: Data produced in the manuscript "Intramuscular plasmid DNA electroporation sequesters neoantigen-specific CD8⁺ T cells at the vaccination site and limits tumor infiltration":



Table S1. Results of differential gene expression analysis with DESeq2 normalized counts (Comparison Tumor M2h-EP vs Tumor Untreated)

Table S2. Results of GSEA enrichment analysis with fgsea (Comparison Muscle M2h-EP vs Muscle Untreated)

Table S3. Results of differential gene expression analysis with DESeq2 normalized counts (Comparison Muscle M2h-EP vs Muscle PBS-EP)

Table S4. Results of deconvolution analysis performed on all the 5 different experimental groups
DOI: 10.5281/zenodo.18432493
title: UV-Vis and Fluorescence Spectroscopy Data for the Interaction of Naphtho[2,3-b]indolizine-6,11-dione Derivatives with Tyramine

description: Biogenic amines (BAs) pose a significant threat to food safety and can cause adverse health effects. The development of innovative sensing materials for the optical detection of BAs is crucial for monitoring food quality. This dataset contains raw spectral data obtained from UV-Vis absorption and fluorescence emission spectra for five naphtho[2,3-b]indolizine-6,11-dione derivatives. The data characterize the optical response of these fluorophores to the sequential addition of tyramine (TYR).

This work has been supported by research and development grant No RTU-PA-2024/1-0028 under the EU Recovery and Resilience Facility funded project No. 5.2.1.1.i.0/2/24/I/CFLA/003 “Implementation of consolidation and management changes at Riga Technical University, Liepaja University, Rezekne Academy of Technology, Latvian Maritime Academy and Liepaja Maritime College for the progress towards excellence in higher education, science, and innovation”.
DOI: 10.5281/zenodo.18432492
title: UV-Vis and Fluorescence Spectroscopy Data for the Interaction of Naphtho[2,3-b]indolizine-6,11-dione Derivatives with Tyramine

description: Biogenic amines (BAs) pose a significant threat to food safety and can cause adverse health effects. The development of innovative sensing materials for the optical detection of BAs is crucial for monitoring food quality. This dataset contains raw spectral data obtained from UV-Vis absorption and fluorescence emission spectra for five naphtho[2,3-b]indolizine-6,11-dione derivatives. The data characterize the optical response of these fluorophores to the sequential addition of tyramine (TYR).

This work has been supported by research and development grant No RTU-PA-2024/1-0028 under the EU Recovery and Resilience Facility funded project No. 5.2.1.1.i.0/2/24/I/CFLA/003 “Implementation of consolidation and management changes at Riga Technical University, Liepaja University, Rezekne Academy of Technology, Latvian Maritime Academy and Liepaja Maritime College for the progress towards excellence in higher education, science, and innovation”.
DOI: 10.15468/dl.c7s2yx
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylocarpus moluccensis",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
}

 The dataset includes 341 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002180-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz3stc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is c54097e6-0972-4acb-b849-eaeba29c917d",
 "TaxonKey is Dermochelys coriacea",
 "Year 2000-2026"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002181-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18432784
title: BUYUK IPAK YO'LINING JAHON SIVILIZATSIYASI VA XALQLAR TARIXIDAGI O'RNI

description: Ushbu maqolada Buyuk Ipak yo‘lining shakllanishi, rivojlanish bosqichlari va uning Sharq hamda G‘arb mamlakatlari o‘rtasidagi savdo-iqtisodiy, siyosiy va madaniy aloqalardagi o‘rni ilmiy manbalar asosida tahlil etiladi. Tadqiqotda Buyuk Ipak yo‘lining tarixiy-geografik yo‘nalishlari, Sug‘d savdogarlarining roli, Markaziy Osiyoning strategik ahamiyati hamda mazkur yo‘l orqali tovarlar, g‘oyalar, dinlar va ilm-fan yutuqlarining tarqalishi yoritib beriladi.
DOI: 10.5281/zenodo.18432783
title: BUYUK IPAK YO'LINING JAHON SIVILIZATSIYASI VA XALQLAR TARIXIDAGI O'RNI

description: Ushbu maqolada Buyuk Ipak yo‘lining shakllanishi, rivojlanish bosqichlari va uning Sharq hamda G‘arb mamlakatlari o‘rtasidagi savdo-iqtisodiy, siyosiy va madaniy aloqalardagi o‘rni ilmiy manbalar asosida tahlil etiladi. Tadqiqotda Buyuk Ipak yo‘lining tarixiy-geografik yo‘nalishlari, Sug‘d savdogarlarining roli, Markaziy Osiyoning strategik ahamiyati hamda mazkur yo‘l orqali tovarlar, g‘oyalar, dinlar va ilm-fan yutuqlarining tarqalishi yoritib beriladi.
DOI: 10.15139/s3/tkx4bu
title: Data Management and Sharing Plan for: Developing a Culturally-Relevant Digital Health Intervention to Treat Binge Eating and Obesity

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.wxxsgc
title: Occurrence Download

description: A dataset containing 1885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cleomella serrulata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1885 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002182-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18432822
title: ImplusiveNoiseForDOA
DOI: 10.5281/zenodo.18432821
title: ImplusiveNoiseForDOA
DOI: 10.5281/zenodo.18432840
title: PIRLS TADQIQOTIDA ADABIY VA AXBOROTLI MATNLAR BILAN ISHLASH

description: Ushbu maqolada  boshlang‘ich sinf o‘quvchilarining matnni o‘qish va tushunish darajalari sifatini baholab beruvchi PIRLS xalqaro tadqiqoti va ushbu tadqiqotda beriladigan adabiy  va axborotli  matnlar uchun tushunish jarayonlari, PIRLS tadqiqotida ishlatiladigan matnlar uchun belgilangan mezonlar ko‘rsatib berilgan
DOI: 10.5281/zenodo.18432839
title: PIRLS TADQIQOTIDA ADABIY VA AXBOROTLI MATNLAR BILAN ISHLASH

description: Ushbu maqolada  boshlang‘ich sinf o‘quvchilarining matnni o‘qish va tushunish darajalari sifatini baholab beruvchi PIRLS xalqaro tadqiqoti va ushbu tadqiqotda beriladigan adabiy  va axborotli  matnlar uchun tushunish jarayonlari, PIRLS tadqiqotida ishlatiladigan matnlar uchun belgilangan mezonlar ko‘rsatib berilgan
DOI: 10.34894/r2ywel
title: In Pursuit of Informed Voters: Three Experimental Studies on Enhanced Voting Advice Applications

description: Voters frequently struggle to understand political attitude statements in Voting Advice Applications (VAAs) and often invest limited effort in resolving these difficulties. Conversational Agent VAAs (CAVAAs) aim to reduce the cognitive effort involved in searching for relevant information by integrating chatbots that can provide contextual support. This paper presents findings from three studies comparing CAVAAs to standard VAAs without additional information (Studies 1 and 2) and to VAAs with static clickable explanations (Study 3, VAA+). Study 1 (N = 93) was a laboratory experiment conducted during the 2023 Dutch Parliamentary elections with university students. Participants were assigned to either a standard VAA, or a CAVAA condition. The chatbot in the CAVAA was used in approximately 45% of cases, with users showing a preference for opinion-based and status quo information. Compared to the standard VAA, CAVAAs reduced non-directional responses and increased evaluations of the tool being usable, Moreover, as well as users’users perceived knowledge was higher, whereas no differences were found for factual knowledge and turn-out intention. Study 2 (N = 144) largely replicated these results in a field setting with a more diverse sample and showed that the effects held hold across different levels of political sophistication. Study 3 (N = 159), conducted during the 2024 European elections, compared a CAVAA to a VAA+ with static clickable explanations. While VAA+ users requested information more frequently than CAVAA users, both tools received similar evaluations, and this finding was again consistent across user groups based on their level of political sophistication. In the manuscript we discuss the implications of these findings for theory and practice.
DOI: 10.15468/dl.vhtuam
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Agkistrodon taylori"
 ]
}

 The dataset includes 77 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002184-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18432790
title: EVALUATION OF THE EFFICACY OF THE ANGIOTENSIN RECEPTOR–NEPRILYSIN INHIBITOR (SACUBITRIL/VALSARTAN) IN PATIENTS WITH CHRONIC HEART FAILURE AND RENAL DYSFUNCTION.

description: Chronic heart failure (CHF) is frequently accompanied by renal dysfunction, forming cardiorenal syndrome and significantly worsening prognosis. Sacubitril/valsartan, an angiotensin receptor–neprilysin inhibitor (ARNI), has demonstrated superior outcomes compared with conventional renin–angiotensin system blockade; however, data in patients with impaired renal function remain limited. To evaluate the clinical efficacy, cardiac remodeling effects, and renal safety of sacubitril/valsartan in patients with chronic heart failure and renal dysfunction.
DOI: 10.5281/zenodo.18432789
title: EVALUATION OF THE EFFICACY OF THE ANGIOTENSIN RECEPTOR–NEPRILYSIN INHIBITOR (SACUBITRIL/VALSARTAN) IN PATIENTS WITH CHRONIC HEART FAILURE AND RENAL DYSFUNCTION.

description: Chronic heart failure (CHF) is frequently accompanied by renal dysfunction, forming cardiorenal syndrome and significantly worsening prognosis. Sacubitril/valsartan, an angiotensin receptor–neprilysin inhibitor (ARNI), has demonstrated superior outcomes compared with conventional renin–angiotensin system blockade; however, data in patients with impaired renal function remain limited. To evaluate the clinical efficacy, cardiac remodeling effects, and renal safety of sacubitril/valsartan in patients with chronic heart failure and renal dysfunction.
DOI: 10.5281/zenodo.18432823
title: Supplemental Data for The Mid Variscan suture in the Morais complex. by Malecki et al. 2024
DOI: 10.5281/zenodo.18432824
title: Supplemental Data for The Mid Variscan suture in the Morais complex. by Malecki et al. 2024
DOI: 10.5281/zenodo.18432802
title: LINF_320016500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18432801
title: LINF_320016500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.2zszzk
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dactylaena boliviensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002185-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17864756
title: Plasma circRNAs as potential biomarkers to assist in the diagnosis of postpartum depression

description: 摘要



Background: This research sought to examine alterations in plasma circular RNA (circRNA) expression in women with postpartum depression (PPD), assessing its potential utility as an auxiliary diagnostic biomarker for this condition. 

Methods: Women examined at 42 days postpartum were recruited between June 2024 and December 2024, during which plasma samples and relevant data were collected. A discovery cohort was established, consisting of 3 women with PPD and 3 control participants. This was followed by a validation cohort of 50 women with PPD and 50 controls, identified using the Structured Clinical Interview. The discovery cohort underwent plasma circRNA microarray analysis, whereas the validation cohort used reverse transcription-quantitative polymerase chain reaction (RT-qPCR) to quantify candidate circRNAs and five circRNAs previously associated with major depressive disorder (MDD).

Results: Plasma levels of circRNA derived from the Interferon Gamma Receptor 2 gene (circIFNGR2), circRNA derived from the ATP-Binding Cassette Subfamily C Member 5 gene (circABCC5), circRNA derived from the Activating Transcription Factor 7 Interacting Protein gene (circATF7IP) were significantly upregulated in the PPD group, whereas circRNA derived from the Dystrophia Myotonica Protein Kinase gene (circDYM) was significantly downregulated (p < 0.05). The area under the curve (AUC) of the four circRNAs, circIFNGR2, circABCC5, circDYM, and circATF7IP, was 0.62 (sensitivity 28%, specificity 96%), 0.64 (sensitivity 36%, specificity 96%), 0.69 (sensitivity 54%, specificity 84%), and 0.65 (sensitivity 62%, specificity 72%), respectively. The joint AUC of circIFNGR2, circABCC5, circDYM, and circATF7IP was 0.80 (sensitivity 78%, specificity 70%). After adjustment for covariates, circIFNGR2, circABCC5, and circATF7IP remained independent predictive factors. 

Conclusions: Changes in the levels of circIFNGR2, circABCC5 identified by microarray analysis, as well as circDYM, and circATF7IP associated with MDD, were associated with the occurrence of PPD. These findings support the potential utility of circRNAs as adjunct diagnostic biomarkers for PPD and offer valuable insights into the molecular mechanisms underlying the disorder.