cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1pjmf8
title: CCDC 1565110: Experimental Crystal Structure Determination

description: Related Article: Heng Liu, Maxim Khononov, Natalia Fridman, Matthias Tamm, Moris S. Eisen|2017|J.Organomet.Chem.|857|123|doi:10.1016/j.jorganchem.2017.09.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pjmg9
title: CCDC 1565111: Experimental Crystal Structure Determination

description: Related Article: Heng Liu, Maxim Khononov, Natalia Fridman, Matthias Tamm, Moris S. Eisen|2017|J.Organomet.Chem.|857|123|doi:10.1016/j.jorganchem.2017.09.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pjmhb
title: CCDC 1565112: Experimental Crystal Structure Determination

description: Related Article: Heng Liu, Maxim Khononov, Natalia Fridman, Matthias Tamm, Moris S. Eisen|2017|J.Organomet.Chem.|857|123|doi:10.1016/j.jorganchem.2017.09.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.894288
title: Data From Paper:  "Design Principles For Platinum Nanoparticles Catalysing The Electrochemical Hydrogen Evolution And Oxidation Reactions: Edges Are Much More Active Than Facets"

description: The data in this spreadsheet was used to produce the figures in the paper

C M Zalitis, A. R. Kucernak,  J. Sharman, and E. Wright, "Design principles for platinum nanoparticles catalysing the electrochemical hydrogen evolution and oxidation reactions: edges are much more active than facets"Journal of Materials Chemistry A, 2017, DOI:10.1039/c7ta05543a.

Please cite the above reference if you wish to use this data
DOI: 10.5281/zenodo.894289
title: Data From Paper:  "Design Principles For Platinum Nanoparticles Catalysing The Electrochemical Hydrogen Evolution And Oxidation Reactions: Edges Are Much More Active Than Facets"

description: The data in this spreadsheet was used to produce the figures in the paper

C M Zalitis, A. R. Kucernak,  J. Sharman, and E. Wright, "Design principles for platinum nanoparticles catalysing the electrochemical hydrogen evolution and oxidation reactions: edges are much more active than facets"Journal of Materials Chemistry A, 2017, DOI:10.1039/c7ta05543a.

Please cite the above reference if you wish to use this data
DOI: 10.15468/24bwoc
title: Revalidation and redescription of Bungona illiesi (Lugo-Ortiz & McCafferty) (Ephemeroptera: Baetidae) from Australia, based on mitochondrial and morphological evidence

description: This dataset contains the digitized treatments in Plazi based on the original journal article J. M. Webb, P. J. Suter (2010): Revalidation and redescription of Bungona illiesi (Lugo-Ortiz & McCafferty) (Ephemeroptera: Baetidae) from Australia, based on mitochondrial and morphological evidence. Zootaxa 2481: 37-51, DOI: 10.5281/zenodo.893946
DOI: 10.15468/aeugao
title: The genus Salfacarus (Acari: Opilioacarida) in Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ma. Magdalena Vázquez G., Hans Klompen (2010): The genus Salfacarus (Acari: Opilioacarida) in Madagascar. Zootaxa 2482: 1-21, DOI: 10.5281/zenodo.893912
DOI: 10.15468/wytk4b
title: Two new Isotomidae species (Collembola) from Espírito Santo State, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gabriel C. Queiroz, Maria Cleide De Mendonça (2010): Two new Isotomidae species (Collembola) from Espírito Santo State, Brazil. Zootax 2480: 37-44, DOI: 10.5281/zenodo.893964
DOI: 10.5281/zenodo.892431
title: Training Data For Chip-Seq Data Analysis (Galaxy Training Material): Identification Of The Binding Sites Of The Estrogen Receptor

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes ChIP-seq data from a study published by Ross-Inness et al., 2012 (DOI:10.1038/nature10730) to identify the binding sites of the Estrogen receptor, a transcription factor known to be associated with different types of breast cancer.
DOI: 10.5281/zenodo.892432
title: Training Data For Chip-Seq Data Analysis (Galaxy Training Material): Identification Of The Binding Sites Of The Estrogen Receptor

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes ChIP-seq data from a study published by Ross-Inness et al., 2012 (DOI:10.1038/nature10730) to identify the binding sites of the Estrogen receptor, a transcription factor known to be associated with different types of breast cancer.
DOI: 10.5517/ccdc.csd.cc1lb7hn
title: CCDC 1469601: Experimental Crystal Structure Determination

description: Related Article: Hwa Jung Roh, Da Young Seo, Ji Yeon Ryu, Junseong Lee, Jae Nyoung Kim|2017|Tetrahedron Lett.|58|4094|doi:10.1016/j.tetlet.2017.09.035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lw3q9
title: CCDC 1485821: Experimental Crystal Structure Determination

description: Related Article: Edward D. Cross, M. Trisha C. Ang, D. Douglas Richards, Amy C. Clemens, Harshiny Muthukumar, Robert McDonald, London Woodfolk, Karina Ckless, Matthias Bierenstiel|2017|Inorg.Chim.Acta|481|69|doi:10.1016/j.ica.2017.09.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lw3rb
title: CCDC 1485822: Experimental Crystal Structure Determination

description: Related Article: Edward D. Cross, M. Trisha C. Ang, D. Douglas Richards, Amy C. Clemens, Harshiny Muthukumar, Robert McDonald, London Woodfolk, Karina Ckless, Matthias Bierenstiel|2017|Inorg.Chim.Acta|481|69|doi:10.1016/j.ica.2017.09.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lw3sc
title: CCDC 1485823: Experimental Crystal Structure Determination

description: Related Article: Edward D. Cross, M. Trisha C. Ang, D. Douglas Richards, Amy C. Clemens, Harshiny Muthukumar, Robert McDonald, London Woodfolk, Karina Ckless, Matthias Bierenstiel|2017|Inorg.Chim.Acta|481|69|doi:10.1016/j.ica.2017.09.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.893586
title: Msme T2 Data From The Ferret Interactive Integrated Neurodevelopment Atlas

description: The first days after birth in ferrets provide a unique view of the development of a complex brain. Unlike mice, ferrets develop a rich pattern of deep neocortical folds and cortico-cortical connections. Unlike humans and other primates, whose brains are well differentiated and folded at birth, ferrets are born with a very immature and completely smooth neocortex: folds, neocortical regionalisation and cortico-cortical connectivity develop in ferrets during the first days after birth. After a period of fast neocortical expansion, during which brain volume increases by up to a factor of 4 in 2 weeks, the ferret brain reaches its adult volume at about 6 weeks of age. This dataset contains brain MRI T2 data from 28 ferrets from P0 to Adults. It can be visualised at http://brainbox.pasteur.fr/project/FIIND.
DOI: 10.5281/zenodo.893587
title: Msme T2 Data From The Ferret Interactive Integrated Neurodevelopment Atlas

description: The first days after birth in ferrets provide a unique view of the development of a complex brain. Unlike mice, ferrets develop a rich pattern of deep neocortical folds and cortico-cortical connections. Unlike humans and other primates, whose brains are well differentiated and folded at birth, ferrets are born with a very immature and completely smooth neocortex: folds, neocortical regionalisation and cortico-cortical connectivity develop in ferrets during the first days after birth. After a period of fast neocortical expansion, during which brain volume increases by up to a factor of 4 in 2 weeks, the ferret brain reaches its adult volume at about 6 weeks of age. This dataset contains brain MRI T2 data from 28 ferrets from P0 to Adults. It can be visualised at http://brainbox.pasteur.fr/project/FIIND.
DOI: 10.6073/pasta/5160912b2bf0669a6ed1dfb9b6b3df41
title: Nutrient concentrations from porewater samples at a Spartina patens-dominated salt marsh at Law's Point, Rowley River, Plum Island Ecosystem, MA.
DOI: 10.5281/zenodo.894324
title: Ab-Initio Molecular Dynamics Trajectories Of Fully Hydrated Tio2 Surfaces

description: This data set contains trajectories of ab-initio molecular dynamics simulations of TiO<sub>2</sub> surfaces in water described in the paper:

L.Agosta, E.G.Brandt and A.P.Lyubartsev<br>
"Diffusion and reaction pathways of water near fully hydrated TiO<sub>2</sub> surfaces from ab initio molecular dynamics",<br>
J.Chem.Phys., 147, 024704 (2107)   doi: http://dx.doi.org/10.1063/1.4991381

Trajectories of 6 fully hydrated TiO2 surfaces are stored under respective names. Each trajectory file contains 50 ps of simulation with frames saved every 0.0005 ps. Format: PDB, gzipped.
DOI: 10.6073/pasta/08ed41cf0c1f581edd2d74041c1244ca
title: Nutrient concentrations from porewater samples at a Spartina alterniflora-dominated salt marsh at Goat Island, North Inlet, Georgetown, SC.
DOI: 10.15468/5ydeza
title: A new species and new record of the Amphilochidae (Crustacea: Amphipoda) from Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Kyung-Sook (2010): A new species and new record of the Amphilochidae (Crustacea: Amphipoda) from Korea. Zootaxa 2477: 21-36, DOI: 10.5281/zenodo.893974
DOI: 10.5281/zenodo.893099
title: Reservoirs Of Hawaii

description: Accompanying file to "Loss of Reservoir Capacity through Sedimentation in Hawai`i: Management Implications for the Twenty-First Century", Pacific Science, 72(1), 2017.  This file includes reservoir information acquired from the National Reservoir Database and the Hawaii Department of Land and Natural Resources, Dam Safety Program.  In addition, it includes sedimentation estimates and capacity estimates from 2015 analysis.
DOI: 10.5281/zenodo.893100
title: Reservoirs Of Hawaii

description: Accompanying file to "Loss of Reservoir Capacity through Sedimentation in Hawai`i: Management Implications for the Twenty-First Century", Pacific Science, 72(1), 2017.  This file includes reservoir information acquired from the National Reservoir Database and the Hawaii Department of Land and Natural Resources, Dam Safety Program.  In addition, it includes sedimentation estimates and capacity estimates from 2015 analysis.
DOI: 10.5517/ccdc.csd.cc25dz0l
title: CCDC 2008459: Experimental Crystal Structure Determination

description: Related Article: Takanori Iwasaki, Toshikazu Akaiwa, Yuko Hirooka, Shrinwantu Pal, Kyoko Nozaki, Nobuaki Kambe|2020|Organometallics|39|3077|doi:10.1021/acs.organomet.0c00446
DOI: 10.5281/zenodo.893183
title: Österreichische Und Internationale Webseiten Für Den Kasachischen Markt

description: tba
DOI: 10.5281/zenodo.893184
title: Österreichische Und Internationale Webseiten Für Den Kasachischen Markt

description: tba
DOI: 10.6073/pasta/e67f68b886d74d0bba598eafe7301cf1
title: Nutrient concentrations from porewater samples at a Typha sp. dominated brackish marsh on the Upper Parker River, Plum Island Ecosystem, MA.
DOI: 10.17632/n49brn26tv.2
title: Data for: The dynamic relationship between temperate and tropical circulation systems across South Africa since the Last Glacial Maximum

description: Seweekspoort SWP-1 and SWP-3 rock hyrax midden stable carbon and nitrogen isotope data
DOI: 10.5281/zenodo.654872
title: Structural Variant Discovery And Genotyping In Next-Generation Sequencing Data

description: Code, logs, data, and summaries for detection and genotyping of genomic structural variants in the D.melanogaster Sussex LHM hemiclones (and one in-house reference line individual), using Genomestrip/2.0

The unfiltered CNV pipleline results are lhm_gs.cnvs.raw.vcf.gz

Filtered CNV results (including removal of bad samples) are filtered.goodS.lhm_gs.cnvs.raw.vcf.gz

The file uploaded to NCBI dbVAR (which comprises of the filtered CNVs and indels &gt;50bp from the HaplotypeCaller method) is lhm_sx16.dbVAR.vcf.gz

The NCBI dbVAR accession number is nstd134. Code, logs and summary data are in the zipped archives, named accordingly. The archive reference_data.zip contains additional input files required for Genomestrip, including a shell script for making some of them. The file gstrip_lhm_RG_bams.list is also an input for Genomestrip, indicating bam file names and paths.

The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
DOI: 10.6092/unibo/amsacta/5695
title: MADFORWATER: WP7: Dissemination, communication and capacity building: Project overview dataset

description: This dataset contains the data relative to the following paper: "Integrated technological and management solutions for wastewater treatment and efficient agricultural reuse in Egypt, Morocco and Tunisia"
DOI: 10.6092/unibo/amsacta/5698
title: Dataset of the Inscriptions of Greek Cyrenaica and Greek Verse Inscriptions of Cyrenaica (v.02)

description: This dataset cointains the XML files of the inscriptions and  the bibliography used in the critical edition: Dobias-Lalou, Catherine. Inscriptions of Greek Cyrenaica in collaboration with Alice Bencivenni, Hugues Berthelot, with help from Simona Antolini, Silvia Maria Marengo, and Emilio Rosamilia; Dobias-Lalou, Catherine. Greek Verse Inscriptions of Cyrenaica in collaboration with Alice Bencivenni, with help from Joyce M. Reynolds and Charlotte Roueché. Bologna: CRR-MM, Alma Mater Studiorum Università di Bologna, 2017. ISBN 9788898010684, http://doi.org/10.6092/UNIBO/IGCYRGVCYR. The inscriptions are marked up according to the principles of EpiDoc. The Inscriptions of Greek Cyrenaica (IGCyr) and the Greek Verse Inscriptions of Cyrenaica (GVCyr) are two corpora, the first collecting all the inscriptions of Greek (VII-I centuries B.C.) Cyrenaica, the second gathering the Greek metrical texts of all periods (VI B.C.-VI A.D.). These new critical editions of inscriptions from Cyrenaica are part of the international project Inscriptions of Libya (InsLib). For the first time all the inscriptions known to us in March 2017, coming from this area of the ancient Mediterranean world, are assembled in a single online and open access publication.
DOI: 10.5281/zenodo.893597
title: Separate-Sex Gwas For Reproductive Fitness In Drosophila Melanogaster (Sussex Lhm Sample)

description: Code, data, logs, and graphs for GWAS on seperate-sex reproductive fitness in Drosophila melanogaster, Sussex LHM population sample.

The shell script, code_drive_basic_gwas.sh, downloads input data files from the internet, drives Plink to select LD-independent SNPs, and then perform a genome-wide association test against female and male fitness, separately. Plink is also used to assign functions and gene names to SNPs. Bash/Unix code is used for formatting/compatibility adjustments, and also to add NCBI-dbSNP IDs to results. The shell script starts an R script that generates basic diagnostic graphs. This updated version differs from the first in that three large unconfirmed snRNA genes have been omitted to improve assignment of SNPs to genes.

See https://f1000research.com/articles/5-2644/v3 and http://www.sussex.ac.uk/lifesci/morrowlab/
DOI: 10.6073/pasta/dfbae28022d1010aa3df407be3636d01
title: Aboveground biomass data from control plots in a Spartina patens-dominated salt marsh at Law's Point, Rowley River, Plum Island Ecosystem, MA.
DOI: 10.5255/ukda-sn-7421-4
title: Vacancy Survey, 2008-2017: Secure Access
DOI: 10.5281/zenodo.893604
title: Ndvi, Paulina Polder Nl, 10 Jul 2016

description: A Sentinel-2 image was atmospherically corrected using Sen2Cor in SNAP 4, and then used to extract NDVI. Dike line was used to mask any area outside of the intertidal and subtidal zone. Coordinate system: WGS_84_UTM.This product is developed for EU FAST project (Foreshore Assessment Using Space Technology).
description: based on Sentinel-2 images from 10Jul.
DOI: 10.5281/zenodo.893605
title: Ndvi, Paulina Polder Nl, 10 Jul 2016

description: A Sentinel-2 image was atmospherically corrected using Sen2Cor in SNAP 4, and then used to extract NDVI. Dike line was used to mask any area outside of the intertidal and subtidal zone. Coordinate system: WGS_84_UTM.This product is developed for EU FAST project (Foreshore Assessment Using Space Technology).
description: based on Sentinel-2 images from 10Jul.
DOI: 10.5281/zenodo.893609
title: False Discovery Rate Calculations For Genome-Wide Association Study Of Reproductive Fitness In Drosophila Melanogaster (Sussex Lhm Sample)

description: R code and results of applying false discovery (FDR) rate calculations to establish statistical signficance in a genome-wide association study of reproductive fitness in Drosophila melanogaster. Phenotype values were generated on hemiclone female and male lines from an outbred, laboratory adapted population. Thus, GWAS were previously performed seperately on the phenotype values for each sex, and also using a bivariate GWAS implemented in the R package multiPhen.

FDR calculations were performed using the R package 'fdrtool' on all SNPs, and on LD-independent SNPs, the latter of which was used to determine p-value thresholds for genome-wide significance when all SNPs were considered.

This version differs from the previous in that some gene positions/names have been reassigned for accuaracy in the input data.
DOI: 10.5281/zenodo.894611
title: Predicted Genes Annotated With Prokka For The 623 Archaeal Uba Genomes

description: Gene prediction and annotation for the 623 archaeal UBA metagenome-assembled genomes using Prokka v1.12 with Pfam v31 and UniProt databases created on April 17, 2017 according to the Prokka instructions.

These genomes are described in:

Parks DH, et al. 2017. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nat Microbiol, doi:10.1038/s41564-017-0012-7/ .

https://www.nature.com/articles/s41564-017-0012-7
DOI: 10.5281/zenodo.894612
title: Predicted Genes Annotated With Prokka For The 623 Archaeal Uba Genomes

description: Gene prediction and annotation for the 623 archaeal UBA metagenome-assembled genomes using Prokka v1.12 with Pfam v31 and UniProt databases created on April 17, 2017 according to the Prokka instructions.

These genomes are described in:

Parks DH, et al. 2017. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nat Microbiol, doi:10.1038/s41564-017-0012-7/ .

https://www.nature.com/articles/s41564-017-0012-7
DOI: 10.5281/zenodo.893278
title: Survey Questions In Pdf-What Industry Wants From Academia In Software Testing Research (Phase 2)

description: Survey questions in PDF-What industry wants from academia in software testing research
DOI: 10.5517/ccdc.csd.cc1p8j7q
title: CCDC 1557323: Experimental Crystal Structure Determination

description: Related Article: Markus Joksch, Hemlata Agarwala, Julia Haak, Anke Spannenberg, Torsten Beweries|2017|Polyhedron|143|118|doi:10.1016/j.poly.2017.09.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p8j8r
title: CCDC 1557324: Experimental Crystal Structure Determination

description: Related Article: Markus Joksch, Hemlata Agarwala, Julia Haak, Anke Spannenberg, Torsten Beweries|2017|Polyhedron|143|118|doi:10.1016/j.poly.2017.09.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p8j9s
title: CCDC 1557325: Experimental Crystal Structure Determination

description: Related Article: Markus Joksch, Hemlata Agarwala, Julia Haak, Anke Spannenberg, Torsten Beweries|2017|Polyhedron|143|118|doi:10.1016/j.poly.2017.09.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p8jbt
title: CCDC 1557326: Experimental Crystal Structure Determination

description: Related Article: Markus Joksch, Hemlata Agarwala, Julia Haak, Anke Spannenberg, Torsten Beweries|2017|Polyhedron|143|118|doi:10.1016/j.poly.2017.09.001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pvrx6
title: CCDC 1574859: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Allan H. White, Lutz M. Engelhardt, John B. Bremner|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.