cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4955282
title: Monte Carlo studies on neutron interactions in radiobiologial experiments

description: Monte Carlo method was used to study the characteristics of neutron interactions with cells underneath a water medium layer with varying thickness. The following results were obtained. (1) The fractions of neutron interaction with <sup>1</sup>H, <sup>12</sup>C, <sup>14</sup>N and <sup>16</sup>O nuclei in the cell layer were studied. The fraction with <sup>1</sup>H increased with increasing medium thickness, while decreased for <sup>12</sup>C, <sup>14</sup>N and <sup>16</sup>O nuclei. The bulges in the interaction fractions with <sup>12</sup>C, <sup>14</sup>N and <sup>16</sup>O nuclei were explained by the resonance spikes in the interaction cross-section data. The interaction fraction decreased in the order: <sup>1</sup>H &gt; <sup>16</sup>O &gt; <sup>12</sup>C &gt; <sup>14</sup>N. (2) In general, as the medium thickness increased, the number of “interacting neutrons” which exited the medium and then further interacted with the cell layer increased. (3) The area under the angular distributions for “interacting neutrons” decreased with increasing incident neutron energy. Such results would be useful for deciphering the reasons behind discrepancies among existing results in the literature.
DOI: 10.6084/m9.figshare.4955270
title: Central Andean Cribra Orbitalia Meta-analysis

description: This dataset includes cribra orbitalia rates culled from published studies (including theses and dissertations) in the prehistoric Central Andes. To be included in this dataset, the following criteria had to met: 1) coordinates for the study site published or determinable from the site description 2) museum collections were sufficiently well-provenienced to a site with determinable spatial locations 3) CO (cribra orbitalia) and PH (porotic hyperostosis) data were reported separately or calculable from the study Thanks for pointing me to additional studies that I have not included here, or correcting errors herein @ bethkscaffidi@gmail.com
DOI: 10.6084/m9.figshare.4955270.v1
title: Peruvian Cribra Orbitalia Meta-analysis

description: This dataset includes cribra orbitalia rates culled from published studies (including theses and dissertations) in the prehistoric Peruvian Andes. To be included in this dataset, the following criteria had to met: 1) coordinates for the study site published or determinable from the site description 2) museum collections were sufficiently well-provenienced to a site with determinable spatial locations 3) CO (cribra orbitalia) and PH (porotic hyperostosis) data were reported separately or calculable from the study Thanks for pointing me to additional studies that I have not included here, or correcting errors herein @ bethkscaffidi@gmail.com
DOI: 10.6084/m9.figshare.4955243
title: Peruvian Cribra Orbitalia Meta-analysis

description: Updated April 29, 2017
DOI: 10.6084/m9.figshare.4955243.v1
title: Peruvian Cribra Orbitalia Meta-analysis

description: Updated April 29, 2017
DOI: 10.6084/m9.figshare.4955201
title: Cellular origins and blood MP concentrations of HbSC and SCA patients not treated with HC.docx

description: <b>Cellular origins and blood MP concentrations of HbSC and SCA patients not treated with HC</b><b></b>
DOI: 10.6084/m9.figshare.4955201.v1
title: Cellular origins and blood MP concentrations of HbSC and SCA patients not treated with HC.docx

description: <b>Cellular origins and blood MP concentrations of HbSC and SCA patients not treated with HC</b><b></b>
DOI: 10.6084/m9.figshare.4955186
title: Ambiguous sequences in public microbial genomes - Overview - (Item C)

description: Microbial reference sequences (archaea, bacteria, fungi, and protozoa from NCBI RefSeq database (20.12.2016)) were split into separate contigs at stretches of 10 Ns or more. Contigs and scaffolds below 10 kb (original and new as the result of split) were aligened against the non-redundant nucleotide collection (nt) database from NCBI using BLASTn with a minimal e-value of 1e-6. Hits with less than 70% query coverage where discarded from further analysis. Hits where assigned their corresponding genus level (e.g. Bradyrizobium for Bradyrizobium lablabi), and if a hit was already assigned to genus or higher level the level was not changed. The best hit for a query sequence was determined according to the bitscore. Query sequences with only hits within their respective genus where regarded as non-ambiguous. The remaining sequences were regarded as ambiguous and removed before building a Kraken and a microbial BLAST microbial reference database.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2018) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> </b><b>Scientific Reports</b>, doi:10.1038/s41598-018-22416-4.
DOI: 10.6084/m9.figshare.4955165
title: 1-to-1 comparison of CNA between Illumina targeted NGS and SNP arrays

description: Supplementary Data S2: Segmented Log2 ratios for the Illumina TGS<br>Supplementary Data S3: Segmented Log2 ratios for the Affymetrix OncoScan FFPE Express SNP arrays<br><br><br>Note:<br>All data are distributed as R workspaces, one for each sample. Each workspace further contains a data frame sCN which is the output of the least square regression PCF segmentation with additional columns appended for convenience
DOI: 10.6084/m9.figshare.4955168
title: 2-by-2 comparison of CNA and phylogenetic trees between Illumina targeted NGS and WGS

description: Supplementary Data S4: Segmented Log2 ratios for the Illumina WGS<br>Supplementary Data S5: Segmented Log2 ratios for the Illumina TGS<br><br>Note:<br>All data are distributed as R workspaces, one for each sample. Each workspace further contains a data frame sCN which is the output of the least square regression PCF segmentation with additional columns appended for convenience<br>
DOI: 10.6084/m9.figshare.4955186.v1
title: Ambiguous sequences in public microbial genomes - Overview - (Item B)

description: Microbial reference sequences (archaea, bacteria, fungi, and protozoa from NCBI RefSeq database (20.12.2016)) were split into separate contigs at stretches of 10 Ns or more. Contigs and scaffolds below 10 kb (original and new as the result of split) were aligened against the non-redundant nucleotide collection (nt) database from NCBI using BLASTn with a minimal e-value of 1e-6. Hits with less than 70% query coverage where discarded from further analysis. Hits where assigned their corresponding genus level (e.g. Bradyrizobium for Bradyrizobium lablabi), and if a hit was already assigned to genus or higher level the level was not changed. The best hit for a query sequence was determined according to the bitscore. Query sequences with only hits within their respective genus where regarded as non-ambiguous. The remaining sequences were regarded as ambiguous and removed before building a Kraken and a microbial BLAST microbial reference database.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2017) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> Journal </b>Vol:Issue page-page.
DOI: 10.6084/m9.figshare.4955156
title: Portal Rodent Trapping Forecasts for April 2017

description: Predictions and 90% prediction intervals on the Portal rodent trapping results for 4/28 - 4/30/2017. Predictions are made for the next 12 months, by species and for total of all rodents, on all plots and on only the long-term controls. Details of the models used can be found at https://github.com/weecology/portalPredictions .
DOI: 10.6084/m9.figshare.4955159
title: Comparison of mutation calls between Illumina and Ion Torrent targeted NGS

description: Supplementary Data S1: Table detailing all putative somatic mutation calls from Mutect2, Strelka and SomaticSniper from the Illumina NGS data along with mutation calls obtained from the Ion Torrent NGS
DOI: 10.6084/m9.figshare.4955165.v1
title: 1-to-1 comparison of CNA between Illumina targeted NGS and SNP arrays

description: Supplementary Data S2: Segmented Log2 ratios for the Illumina TGS<br>Supplementary Data S3: Segmented Log2 ratios for the Affymetrix OncoScan FFPE Express SNP arrays<br><br><br>Note:<br>All data are distributed as R workspaces, one for each sample. Each workspace further contains a data frame sCN which is the output of the least square regression PCF segmentation with additional columns appended for convenience
DOI: 10.6084/m9.figshare.4955168.v1
title: 2-by-2 comparison of CNA and phylogenetic trees between Illumina targeted NGS and WGS

description: Supplementary Data S4: Segmented Log2 ratios for the Illumina WGS<br>Supplementary Data S5: Segmented Log2 ratios for the Illumina TGS<br><br>Note:<br>All data are distributed as R workspaces, one for each sample. Each workspace further contains a data frame sCN which is the output of the least square regression PCF segmentation with additional columns appended for convenience<br>
DOI: 10.6084/m9.figshare.4955186.v3
title: Ambiguous sequences in public microbial genomes - Overview - (Item C)

description: Microbial reference sequences (archaea, bacteria, fungi, and protozoa from NCBI RefSeq database (20.12.2016)) were split into separate contigs at stretches of 10 Ns or more. Contigs and scaffolds below 10 kb (original and new as the result of split) were aligened against the non-redundant nucleotide collection (nt) database from NCBI using BLASTn with a minimal e-value of 1e-6. Hits with less than 70% query coverage where discarded from further analysis. Hits where assigned their corresponding genus level (e.g. Bradyrizobium for Bradyrizobium lablabi), and if a hit was already assigned to genus or higher level the level was not changed. The best hit for a query sequence was determined according to the bitscore. Query sequences with only hits within their respective genus where regarded as non-ambiguous. The remaining sequences were regarded as ambiguous and removed before building a Kraken and a microbial BLAST microbial reference database.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2018) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> </b><b>Scientific Reports</b>, doi:10.1038/s41598-018-22416-4.
DOI: 10.6084/m9.figshare.4955156.v1
title: Portal Rodent Trapping Forecasts for April 2017

description: Predictions and 90% prediction intervals on the Portal rodent trapping results for 4/28 - 4/30/2017. Predictions are made for the next 12 months, by species and for total of all rodents, on all plots and on only the long-term controls. Details of the models used can be found at https://github.com/weecology/portalPredictions .
DOI: 10.6084/m9.figshare.4955186.v2
title: Ambiguous sequences in public microbial genomes - Overview - (Item B)

description: Microbial reference sequences (archaea, bacteria, fungi, and protozoa from NCBI RefSeq database (20.12.2016)) were split into separate contigs at stretches of 10 Ns or more. Contigs and scaffolds below 10 kb (original and new as the result of split) were aligened against the non-redundant nucleotide collection (nt) database from NCBI using BLASTn with a minimal e-value of 1e-6. Hits with less than 70% query coverage where discarded from further analysis. Hits where assigned their corresponding genus level (e.g. Bradyrizobium for Bradyrizobium lablabi), and if a hit was already assigned to genus or higher level the level was not changed. The best hit for a query sequence was determined according to the bitscore. Query sequences with only hits within their respective genus where regarded as non-ambiguous. The remaining sequences were regarded as ambiguous and removed before building a Kraken and a microbial BLAST microbial reference database.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2017) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> Journal </b>Vol:Issue page-page.
DOI: 10.6084/m9.figshare.4955159.v1
title: Comparison of mutation calls between Illumina and Ion Torrent targeted NGS

description: Supplementary Data S1: Table detailing all putative somatic mutation calls from Mutect2, Strelka and SomaticSniper from the Illumina NGS data along with mutation calls obtained from the Ion Torrent NGS
DOI: 10.5281/zenodo.4003541
title: InHARD - Industrial Human Action Recognition Dataset in the Context of Industrial Collaborative Robotics

description: <strong>Objectives</strong> We introduce a RGB+S dataset named “Industrial Human Action Recognition Dataset” (InHARD) from a real-world setting for industrial human action recognition with over 2 million frames, collected from 16 distinct subjects. This dataset contains 13 different industrial action classes and over 4800 action samples. The introduction of this dataset should allow us the study and development of various learning techniques for the task of human actions analysis inside industrial environments involving human robot collaborations.<br> Read <strong>00-README.txt</strong> for detailed download instructions. More details on the dataset at https://github.com/vhavard/InHARD This work has been performed at the CESI LINEACT : https://recherche.cesi.fr/inhard-industrial-human-action-recognition-dataset/
description: Parts of this work has been performed within the AGIRH project and has been funded in the framework of the Normandy Regional Council
DOI: 10.5281/zenodo.4003540
title: InHARD - Industrial Human Action Recognition Dataset in the Context of Industrial Collaborative Robotics

description: <strong>Objectives</strong> We introduce a RGB+S dataset named “Industrial Human Action Recognition Dataset” (InHARD) from a real-world setting for industrial human action recognition with over 2 million frames, collected from 16 distinct subjects. This dataset contains 13 different industrial action classes and over 4800 action samples. The introduction of this dataset should allow us the study and development of various learning techniques for the task of human actions analysis inside industrial environments involving human robot collaborations.<br> Read <strong>00-README.txt</strong> for detailed download instructions. More details on the dataset at https://github.com/vhavard/InHARD This work has been performed at the CESI LINEACT : https://recherche.cesi.fr/inhard-industrial-human-action-recognition-dataset/
description: Parts of this work has been performed within the AGIRH project and has been funded in the framework of the Normandy Regional Council
DOI: 10.6084/m9.figshare.4954643
title: readEEG analysis files

description: Analysis files for EEG correlation study
DOI: 10.6084/m9.figshare.4954643.v2
title: readEEG analysis files

description: Analysis files for EEG correlation study
DOI: 10.6084/m9.figshare.4954619
title: Table 3.docx

description: Table 3 for paper
DOI: 10.6084/m9.figshare.4954619.v1
title: Table 3.docx

description: Table 3 for paper
DOI: 10.6084/m9.figshare.4954643.v1
title: readEEG analysis files

description: Analysis files for EEG correlation study
DOI: 10.6084/m9.figshare.4954598
title: SWDF and DBpedia Live Changeset used in Iguana Benchmark 2016

description: The DBpedia Live and SWDF generated changesets used in the Iguana Feasible SPARQL Benchmark 2016. <br>
DOI: 10.6084/m9.figshare.4954595
title: Raw Data

description: Raw Data for ego-depletion replication
DOI: 10.6084/m9.figshare.4954583
title: Validation of the Predictive Toxicogenomics Space with cell culture data

description: <b>Cell culture for <i>in vitro</i> cytotoxicity predictions</b>. To validate the predictive performance of the PTGS, a set of CMap instances for 38 compounds that were not included in the NCI-60 data set were assessed. MCF7 (ATCC® HTB22™), PC­3 (ATCC® CRL­1435™) and HL­60 (ATCC® CCL­240™) cell lines were obtained directly from American Type Culture Collection (LGC Promochem AB) and maintained at 37 °C with 5 % CO2 in a humidified incubator according to provider’s instructions. Cell number was titrated to ensure that cell proliferation remained in a linear-exponential phase throughout the experiment (1000-2000 cells per well were plated). Each experiment was performed from unique assay ready cells (same passage). Data quality and assay comparability were first verified by replicating the measurements for 36 instances for 16 different compounds already measured in NCI-60. Measurements were carried out at the Institute for Molecular Medicine Finland, FIMM. The authors want to thank Ida Lindenschmidt and the High Throughput Biomedicine unit at FIMM for technical support to cellular high-throughput screening assays.<br>Table 1. Raw data as % of cell viability after compound treatment. Molar concentrations from -8 to -4 on the log10 scale (5 doses) were employed. Columns: Compound, Cell Line, Cell.viability(%) (-8 to -4, log10.conc.).<br>Table 2. Calculated GI50 values for control treatments, 16 compounds which have corresponding cytotoxicity data in the NCI-60 DTP database. Columns: Chemical, CellLine, CMapDose (concentration at which CMap profile was measured), GI50.NCI60 (GI50 in the NCI60 DTP database), Batch.NCI60 (batch in the NCI60 database), Batch.FIMM (batch in FIMM dataset), GI50.FIMM (GI50 value in the FIMM dataset).<br>Table 3. Calculated GI50 values for test treatments, 38 compounds which have gene expression data in the Connectivity Map database (used to calculate PTGS cytotoxicity virtual GI50 scores). Columns: Chemical, CellLine, CMapDose (concentration at which CMap profile was measured), Batch.FIMM (batch in FIMM dataset), GI50.FIMM (GI50 value in the FIMM dataset).<br>
DOI: 10.6084/m9.figshare.4954568
title: financial_ADHD_Questionnaire.sav

description: This study extends prior research by examining associations between ADHD symptoms, delay discounting, and an array of previously unevaluated financial outcomes among 544 individuals (mean age 35 years). Controlling for age, income, sex, education, and substance use, ADHD symptoms were associated with delay discounting, late credit card payments, credit card balances, use of pawn services, personal debt, and employment histories (less time spent at more jobs). Consistent with neural models of reward processing and associative learning, more of these relations were attributable to hyperactive-impulsive symptoms than inattentive symptoms. Implications for financial decision-making and directions for future research are discussed.
DOI: 10.6084/m9.figshare.4954595.v1
title: Raw Data

description: Raw Data for ego-depletion replication
DOI: 10.6084/m9.figshare.4954523
title: Temperature calibration, normal force measurements, undisturbed motion measurements, and stick-slip motion cycles in MEMS devices with sliding sidewall surfaces

description: This .zip file contains research data sets acquired to investigate the temperature dependence of friction in MEMS devices with sidewall surfaces subject to frictional contact. The corresponding folders include: (a) the peak position measurements from Raman spectroscopy (Raman measurements), (b) the displacement measurements of the 'ram' until it touches a counter-surface for the normal force per contact temperature (normal force data), (c) the displacement measurements of the sliding counter-surface per temperature when it is not in contact with the ram (undisturbed data), (d) the displacement measurements of the counter-surface for increasing temperature when it is in contact with the ram (friction data from 25 to 300), and (e) the displacement measurements of the counter-surface for decreasing temperature when it is in contact with the ram (friction data from 300 to 25).<br>
DOI: 10.6084/m9.figshare.4954511
title: Poprawione statystyki frekwencyjne i wyborcze wyborów do rad osiedli 2017

description: Statystyki wyborcze i frekwencyjne dot. wyborów do rad osiedli 2017 we Wrocławiu na bazie PDF-a z BIP wrocławskiego urzędu miejskiego pobranego w dniu 28.04.2017 ok. godziny 13, przepisane do arkusza kalkulacyjnego i poprawione tam gdzie były błędy. Dane zdenormalizowane w zakresie par obwód-okręg, ponieważ niektóre okręgi miały więcej niż 1 obwód, w celu uzyskania danych znormalizowanych należy odrzucić zmienną obwodu przez agregację po polu okręg i zsumowaniu wartości liczbowych, a następnie ponownym przeliczeniu wartości procentowych (frekwencji).
DOI: 10.6084/m9.figshare.4954436
title: Tricuspicanthus gannitus jaws: micro-CT slice images and .STL

description: Micro-CT scan slice images and original .STL file from a scan of the upper and lower jaws of Tricuspicanthis gannitus, an Early Devonian ischnacanthiform acanthodian (UALVP 48487)
DOI: 10.6084/m9.figshare.4954478
title: Euryacanthus rugosus jaws: micro-CT slice images and .STL

description: Micro-CT slice data and .STL file from a scan of UALVP 45648, the holotype of Euryacanthus rugosus, an Early Devonian ischnacanthiform acanthodian
DOI: 10.6084/m9.figshare.4954478.v1
title: Euryacanthus rugosus jaws: micro-CT slice images and .STL

description: Micro-CT slice data and .STL file from a scan of UALVP 45648, the holotype of Euryacanthus rugosus, an Early Devonian ischnacanthiform acanthodian
DOI: 10.6084/m9.figshare.4954511.v1
title: Poprawione statystyki frekwencyjne i wyborcze wyborów do rad osiedli 2017

description: Statystyki wyborcze i frekwencyjne dot. wyborów do rad osiedli 2017 we Wrocławiu na bazie PDF-a z BIP wrocławskiego urzędu miejskiego pobranego w dniu 28.04.2017 ok. godziny 13, przepisane do arkusza kalkulacyjnego i poprawione tam gdzie były błędy. Dane zdenormalizowane w zakresie par obwód-okręg, ponieważ niektóre okręgi miały więcej niż 1 obwód, w celu uzyskania danych znormalizowanych należy odrzucić zmienną obwodu przez agregację po polu okręg i zsumowaniu wartości liczbowych, a następnie ponownym przeliczeniu wartości procentowych (frekwencji).
DOI: 10.6084/m9.figshare.4954511.v3
title: Poprawione statystyki frekwencyjne i wyborcze wyborów do rad osiedli 2017

description: Statystyki wyborcze i frekwencyjne dot. wyborów do rad osiedli 2017 we Wrocławiu na bazie PDF-a z BIP wrocławskiego urzędu miejskiego pobranego w dniu 28.04.2017 ok. godziny 13, przepisane do arkusza kalkulacyjnego i poprawione tam gdzie były błędy. Dane zdenormalizowane w zakresie par obwód-okręg, ponieważ niektóre okręgi miały więcej niż 1 obwód, w celu uzyskania danych znormalizowanych należy odrzucić zmienną obwodu przez agregację po polu okręg i zsumowaniu wartości liczbowych, a następnie ponownym przeliczeniu wartości procentowych (frekwencji).
DOI: 10.6084/m9.figshare.4954511.v2
title: Poprawione statystyki frekwencyjne i wyborcze wyborów do rad osiedli 2017

description: Statystyki wyborcze i frekwencyjne dot. wyborów do rad osiedli 2017 we Wrocławiu na bazie PDF-a z BIP wrocławskiego urzędu miejskiego pobranego w dniu 28.04.2017 ok. godziny 13, przepisane do arkusza kalkulacyjnego i poprawione tam gdzie były błędy. Dane zdenormalizowane w zakresie par obwód-okręg, ponieważ niektóre okręgi miały więcej niż 1 obwód, w celu uzyskania danych znormalizowanych należy odrzucić zmienną obwodu przez agregację po polu okręg i zsumowaniu wartości liczbowych, a następnie ponownym przeliczeniu wartości procentowych (frekwencji).
DOI: 10.6084/m9.figshare.4954202
title: Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health

description: Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health