cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c3c51/3
title: SE of LM Hue of Oriolus males

description: SE across individuals of LM Hue in Oriolus males for the 13 plumage patches (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/4
title: Oriolus male morphometrics, per species

description: Means of morphological measurements (in mm) for Oriolus males (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/5
title: SE of Oriolus male morphometrics, per species

description: SE across individuals of morphological measurements (in mm) for Oriolus males (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/6
title: Primary morphometric data of Oriolus males

description: Primary morphometric measurements of Oriolus males (details in the file itself). This is a xls file prepared in LibreOffice Calc ver. 4.2.8.2.
DOI: 10.5061/dryad.cd3hv/1
title: Bian_2016_GWAS_and_Genomic_Prediction_Data_Supplement
DOI: 10.5061/dryad.fh078/10
title: Calculated pollen deposition per bee species group

description: Formulas used for the calculation from "R_script_SVD". Data used in the formulas from field data "handling.time_video2014.csv", "vis.rate_video2014.csv", "SVD.bee-species_pumpkin_2015.csv", one sheet per bee species group (d.bumble, d.honey, d.halictid). Microsoft Excel used to create the file.
DOI: 10.5061/dryad.fh078/3
title: Pollen grains at bagged and open anthers in 2012 and 2015

description: Data collected in the field; Open Office org Calc used to create the data file.
DOI: 10.5061/dryad.fh078/4
title: R script analysing pollen at the anther data

description: Data file used for the analysis "pollen.anther.csv", software R 3.2.2 (2015) used to create the file.
DOI: 10.5061/dryad.fh078/5
title: Visitation rates of bee groups in videos in 2014

description: Visitation rates collected by in total 54 hours of video recording in 18 fields in 2014. Open Office Org Calc was used to create this data file. "no.visits" = number of visits by the corresponding species groups, "species" = species group {"bumble" = Bombus terrestris, B. lucorum, B. lapidarium; "halictid" = several Halictidae, mainly Lasioglossum species; "honey" = Apis mellifera}, "start.time" = starting time of the video at three different time periods (7:00 am, 8:30 am, 10:00 am).
DOI: 10.5061/dryad.fh078/6
title: Handling time of bee individuals (video data) in 2014

description: Handling time of the 2100 bee individuals are derived from the videos recorded in 18 fields in 2014. Open Office org Calc was used to create the data file. Abbreviations: "species" = three different bee species groups ("bumble" = Bombus terrestris, B. lucorum, B. lapidarius; "halictid" = several Halictidae species, mainly Lasioglossum species; "honey" = Apis mellifera), "handling.time.s" = total time bees spent handling the flower in seconds, "nectar.time.s" = total time bees spent on/at the stigma and feeding nectar, "group.halictid" = halictid species were divided into two size classes (length ~ 6 mm or ~ 8 mm), "successful.visit" = visit, where stigma was touched = nectar.time.s &gt; 0; "start.time" = starting time of the video divided into three time periods (7:00 am, 8:30 am, 10:00 am).
DOI: 10.5061/dryad.fh078/7
title: R script analysing video data

description: Data files analysed "vis.rate_video2014.csv" and "handling.time_video2014". Software R 3.2.2 (2015) was used.
DOI: 10.5061/dryad.fh078/8
title: Pollen-yield experiment data from 2014 and 2015

description: Data from hand-pollination experiments in fields with different levels of pollen deposition in 2014 (5 levels) and in 2015 (7 levels). Details see manuscript and Table S1 in the supplementary material.  Open Office Calc used to create this file. Abbreviations: "harvestable" = 1, if pumpkin fruits could be harvested, "marketable" = 1, if pumpkin fruits weigh more than 800 g.
DOI: 10.5061/dryad.g7h7n/14
title: Elison coniss

description: Elison Lake plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/15
title: High coniss

description: High Lake plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/16
title: Moraine Coniss

description: Moraine Pond plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/17
title: Paradise Coniss

description: Paradise Pond plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/18
title: Plateau pond 2 coniss

description: Plateau Pond 2 plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/19
title: Proteus coniss

description: Proteus Lake plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/20
title: SV5 coniss

description: SV Pond 5 plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/21
title: SV8 coniss

description: SV Pond 8 plot of CONISS model results
DOI: 10.5061/dryad.g7h7n/22
title: West coniss

description: West Lake plot of CONISS model results
DOI: 10.5061/dryad.gk1qk/1
title: NormalizedCount-lab-labels

description: Normalized read counts generated by DESeq2 LRT analysis
DOI: 10.5061/dryad.gk1qk/4
title: LRT_Updated GO annotations

description: Updated GO annotations for the 55 genes identified via LRT
DOI: 10.5061/dryad.gk1qk/5
title: GLM new GO annotations

description: Blast2GO updates of annotations for DE genes detected by GLM
DOI: 10.5061/dryad.gk1qk/6
title: salmon_count_table

description: Read count table from Salmon light-weight alignment
DOI: 10.5061/dryad.m3069/3
title: male activity

description: Time-Activity (aggression, spawning interaction, rove and rest) of large and small males in the slope and shelf habitat.
DOI: 10.5061/dryad.m3069/4
title: annual aggregation density

description: Annual density census of fish at the aggregation site in January and February 2013 and 2014 respectively.
DOI: 10.5061/dryad.r25s5/1
title: Genotypes at variable sites

description: We provide the genotypes used to infer divergence between samples. At each polymorphic position we selected randomly one allele for each .sample
DOI: 10.5061/dryad.r25s5/3
title: Divergence_Dryad

description: Genetic divergence and phylogenies for ortholog clusters. For each cluster we show 4 and 5 species gene-tree topologies as well as categories used in Figure 4. We also sho values of genetic divergence (d) and RND for pairwise comparisons between the 5 samples (see paper for species codes).
DOI: 10.5061/dryad.rn38r/1
title: Data from: Do picture-based charts overestimate visual acuity? Comparison of kay pictures, lea symbols, hotv and keeler logmar charts with sloan letters in adults and children

description: Visual acuity data collected from adults and child participants for study one and study two
DOI: 10.5061/dryad.tf7f7/1
title: PONE-D-16-38039_FTC Supp. Data
DOI: 10.5061/dryad.2pb08/1
title: Standardised CPUE of cod and hydrographic data

description: The dataset contains information on all the variables at the aggregation level of individual bottom trawl hauls as used in the analyses presented in "Spatio-temporal dynamics of a fish predator: density-dependent and hydrographic effects on Baltic Sea cod population". 
Year: year when the cod sample was collected;
Lon: longitude (decimal-degree) of the position where the cod sample was collected;
Lat: latitude (decimal-degree) of the position where the cod sample was collected;
Depth: bottom depth (m) where the cod sample was collected;
AG3: catch-per-unit-effort (kg/h) of cod of age 3+ of the trawl station;
Oxy: modelled bottom oxygen (ml/L) associated to the trawl station;
Sal: modelled bottom salinity (psu) associated to the trawl station;
Crv: cod reproductive volume (km3) estimated for the year and ICES subdivision of the trawl station;
Stk: stock size (thousands) of the eastern Baltic cod in the year of the sample from stock assessment (ICES 2013).
DOI: 10.5061/dryad.3t5q5/1
title: Table 1: Dry biomass of poplar leaves, stems and roots under high, medium and low P supply.

description: Read_me1 contains Information for Table 1, Table2, and table 3
DOI: 10.5061/dryad.3t5q5/2
title: Table2_Elements_by_ICP

description: Description is found in Read_me1
DOI: 10.5061/dryad.3t5q5/3
title: Table3_C_N

description: Read_me1 contains the Information for table 3
DOI: 10.5061/dryad.3t5q5/4
title: Table4_Gene_Transcript_abundance

description: see read_me for Table4_Gene_Transcript_abundance
DOI: 10.5061/dryad.408ht/3
title: R code for round goby differential expression analysis
DOI: 10.5061/dryad.408ht/4
title: R code for tubenose goby differential expression analysis
DOI: 10.5061/dryad.408ht/5
title: R code for analysis of shared orthologs

description: This R code uses information about the reciprocal best BLAST matches between round and tubenose goby transcripts to combine and analyze the count datasets for shared orthologs.
DOI: 10.5061/dryad.408ht/6
title: Reciprocal best hits between round and tubenose goby transcripts

description: This file was generated by reciprocally BLASTing the translated longest open reading frame of one species on the other. Pairs of round and tubenose goby transcripts retained in this file are where the pair represent each others best match. This file is required for the analysis of shared orthologs.
DOI: 10.5061/dryad.408ht/7
title: Unix shell script for transcriptome assembly and read mapping

description: This script was used to perform de novo transcriptome assembly and read mapping for both round and tubenose goby. Its inclusion is primarily to document specific parameters used for these analysis steps.
DOI: 10.5061/dryad.4g26c/5
title: BC_Oviposition_success

description: This folder contains the data for the "Impact of oviposition traits on BCL oviposition success" section of the manuscript. It includes ovipositor landmark coordinates, ovipositor size measurements, oviposition pattern, and associated oviposition success for N. lecontei backcross females.
DOI: 10.5061/dryad.5c6d5/1
title: dormice_distances_NB

description: distance analysis for capture events and moving tendencies
DOI: 10.5061/dryad.5c6d5/2
title: dormice_distances_NB_mast

description: data to analyse the tendencies of dormice to move in different mast situations
DOI: 10.5061/dryad.5c6d5/3
title: dormice_captures_environmental

description: captures under different environmental conditions
DOI: 10.5061/dryad.5c6d5/4
title: dormice_female_captures_environmental

description: capture numbers under different environmental conditions for females
DOI: 10.5061/dryad.5c6d5/5
title: dormice_male_captures_environmental

description: capture numbers for different environmental conditions males
DOI: 10.5061/dryad.5jm0k/1
title: WaterContent

description: Volumetric water content
DOI: 10.5061/dryad.5jm0k/2
title: Demography

description: Demographic data and calculated variables.
DOI: 10.5061/dryad.8567b/1
title: Sampled trees from the Bayesian analysis

description: Randomly sampled phylogenetic trees from the posterior distribution returned from the Bayesian phylogenetic inference ran in MrBayes 3.2.2. Sampled 100 trees from each one of four independent searches in MrBayes, in a total of 400 trees. Trees have been ultrametricised and pruned.
DOI: 10.5061/dryad.8567b/2
title: Bayesian phylogenetic analysis

description: Results from the Bayesian phylogenetic analysis ran in MrBayes 3.2.2. Four independent searches with three heated chains and one cold chain each. Default MrBayes’ priors. Searches initiated with random trees. Markov chain Monte Carlo simulations (MCMC) were run for 10 million iterations and trees sampled every 10,000 iterations.
DOI: 10.5061/dryad.8567b/3
title: Reflectance data

description: Specimen reflectance data. The first column shows wavelength (nm) values. Each one of the following columns represents the average reflectance value (%) of five measurements of one specimen. Reflectance values have been smoothed (R function 'smooth.spline' with argument 'spar'=0.7), and negative values converted to zero. Column names indicate taxon names. More detail can be found in 'specimen data.csv' file.
DOI: 10.5061/dryad.c3c51/10
title: SE of Oriolus male songs, per species

description: SE across individuals of song characteristics of Oriolus males used in the study (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/11
title: Primary Oriolus male song data

description: Primary data on Oriolus male songs (details in the file itself). This is a xls file prepared in LibreOffice Calc ver. 4.2.8.2.
DOI: 10.5061/dryad.c3c51/12
title: Primary spectrophotometric data of Oriolus males

description: Primary spectrophotometric data of Oriolus males. This is a csv file with comma as delimiter. It is an output from spectra processing in R software, package "pavo".
wl -- wavelength, from 300 to 700 mn
further columns -- average reflectance values in 1-nm increments for males of all species, separately for all patches; here M means male, whereas U means unknown sex, but these were used as males
DOI: 10.5061/dryad.c3c51/13
title: Phylogenetic tree of Oriolus used in the study

description: Phylogenetic tree used in the study. For the source of the tree, see the accompanying publication.
DOI: 10.5061/dryad.c3c51/7
title: MS Hue of Oriolus males

description: MS Hue data for Oriolus males for the 13 plumage patches (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/8
title: SE of MS Hue of Oriolus males

description: SE across individuals of MS Hue in Oriolus males for the 13 plumage patches (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c3c51/9
title: Oriolus male songs, per species

description: Song characteristics of Oriolus males used in the study as means for species (see the accompanying publication for the codes). This is a csv file with comma as delimiter.
DOI: 10.5061/dryad.c4t44/1
title: IR2017_EH_WD_MvK_data

description: Complete primary and supplementary data: sown species colonization data, temperature differences between heating treatments, soil moisture measurements, sown species optimal germination rates, grassland species composition, grassland biomass
DOI: 10.5061/dryad.fh078/11
title: R script modelling the contribution of bee groups to pumpkin yield

description: Single visit pollen deposition data is the calculated data from the file "calculated deposition.model.xls". Data file used "mean_hpa.csv". Software R 3.2.2 used.
DOI: 10.5061/dryad.fh078/12
title: Mean values of fruit set per pollen deposition level

description: Mean values of set of harvestable pumpkins per pollen deposition level derived from data file "pollen.yield.2014_2015.red.csv". Open Office Calc used to create the file. Abbrevations: "pollen.est" = estimated level of pollen deposition, "mean" = mean value of set of harvestable pumpkins, "mp2" = mean value + E-13 in percent.
DOI: 10.5061/dryad.fh078/9
title: R script analysing the hand-pollination data

description: Data files used "mean_hpa.csv" and "pollen.yield.2014_2015.red". Software R 3.2.2 (2015) used for analysis.
DOI: 10.5061/dryad.fs401/1
title: Rocha et al, 2017 - Sex-specific responses to fragmentation

description: Number of captures for males and females of Carollia perspicillata and Rhinophylla pumilio using ground-level mist nets in 39 sampling sites at the Biological Dynamics of Forest Fragments Project (BDFFP), Brazilian Amazon. Sampling was conducted during the dry and wet season between 2011 and 2013. For each site, nine variables describing vegetation structure is provided. Moreover, four metrics each for landscape composition (primary forest cover, secondary forest cover – initial, intermediate and advanced stage) and landscape configuration (edge density, patch density, mean nearest neighbour distance and mean shape index) are also given for landscape buffers with radii of 250, 500, 750, 1,000 and 1,500 m surrounding each of the 39 sampling sites.
DOI: 10.5061/dryad.g4q05/1
title: EnergyDensityDatebaseDryad

description: Database of intraspecific variation in proximate composition and energy density data for 55 species of fish.                             Variables: Species;	Ref (original reference for data);	Median.Latitude (approximate median latitude of sample collection);	Median.Longitude (approximate median longitude of sample collection)	Capture.Year	(year of sample collection); Julian.Median (median julian day (1-365) of sample collection);	Julian.Range (length in days of the period over which samples were collected;)	N.sample (number of fish per sample, if N &gt; 1 data are composite sample);	Length.mm.TL	 (Fish Total Length (mm); p.Water (% water);	p.Protein (% protein);	p.Lipid (% lipid);	p.Ash (% ash);	EnergyDensity.kJ/g	 (Energy density of fish [kJ per g wet weight]); L_calc (0 if fish length taken from paper, 1 if calculated from weight using weight length relationship);	EDtype ("paper" = energy density taken from paper, "ProLip" = calculated from proximate composition data on % protien and % lipid, "LipOnly" = estimated from % lipid data alone)
DOI: 10.5061/dryad.g4q05/2
title: annualized GSI data

description: Data on annualized gonadosomatic Index (aGSI) for fish species compiled from the literature. For species that reproduce once annually, aGSI is equivalent to the GSI (gonad weight/somatic weight) of mature fish immediately preceding spawning. For species spawning biannually, aGSI is GSI divided by 2, and for species spawning multiple times per year, aGSI was calculated by multiplying ovary weight by the number of batches spawned per year.
DOI: 10.5061/dryad.g7h7n/23
title: Elison N2

description: Elison Lake Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/24
title: High N2

description: High Lake Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/25
title: Moraine N2

description: Moraine Pond Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/26
title: Paradise N2

description: Paradise Pond Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/27
title: PP2 N2

description: Plateau Pond 2 Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/28
title: Proteus N2

description: Proteus Lake Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/29
title: SV5 N2

description: SV Pond 5 Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.g7h7n/30
title: SV8 N2

description: SV Pond 8 Hill's N2 and Chlorophyll a values
DOI: 10.5061/dryad.h4d6h/1
title: Survival_and_mass_data

description: Data on male survival and body mass from mesocosm experiments
DOI: 10.5061/dryad.h4d6h/2
title: Behavioral_Observations

description: Data from behavioral observations of focal males
DOI: 10.5061/dryad.k713n/1
title: Geometric morphometric data for body shape for Big Reef

description: Landmarks and semi-landmarks for body shape for Big Reef fish
DOI: 10.5061/dryad.k713n/2
title: Genotype data in .vcf format

description: Filtered SNPs in .vcf format from 486 individuals genotyped at 6822 SNPS
DOI: 10.5061/dryad.k713n/3
title: Geometric morphometric data for head shape for Big Reef

description: Landmarks and semi-landmarks for head shape for Big Reef
DOI: 10.34816/efa.archives.360561
title: Philippes-L9368-017A-Forum, côté est, chapiteau ionique en marbre, lit d'attente

description: Référence : L9368-017A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360560
title: Philippes-L9368-016A-Forum, côté est, chapiteau ionique en marbre, face

description: Référence : L9368-016A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360559
title: Philippes-L9368-015A-Forum, côté est, chapiteau ionique en marbre, face

description: Référence : L9368-015A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360558
title: Philippes-L9367-003A-Forum, côté est, bloc pilastre cannelé, marbre

description: Référence : L9367-003A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360557
title: Philippes-L9367-002A-Forum, côté est, bloc pilastre cannelé, marbre

description: Référence : L9367-002A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360556
title: Philippes-L9367-001A-Forum, côté est, bloc pilastre cannelé, marbre

description: Référence : L9367-001A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.5255/ukda-sn-857083
title: Exploring the Use of Antibiotics on Small-Scale Pig Farms in Kiambu County, Kenya, 2022

description: Practices around antibiotic use (ABU), such as drivers for use and administration of antibiotics, were unknown for small-scale pig farms in Kiambu County – a peri-urban area of Nairobi. Murungi et al. discussed food safety concerns owing to an increase in demand and therefore supply of pork in Nairobi, Kenya (2021). One such concern was that withdrawal periods after administering antibiotics were often not observed by small-scale pig farmers in peri-urban areas of Nairobi. Abattoir testing for antibiotic residues has since been completed from meat samples from one local independent abattoir (Bor et al., 2023) which is predominantly supplied by small farms in the immediate neighbouring areas (Murungi et al., 2021). This analysis found 41% of pork samples collected tested positive for the presence of antibiotic residues, adding to these food safety concerns.

Therefore, this study aimed to understand ABU on small-scale pig farms in Kiambu County and offer possible future improvements in this area. To do this, we first wanted to understand which ABU collection method was most appropriate to understand ABU at the farm-level in this context. We undertook a problem identification and exploration project to evaluate methods for collecting instances of ABU in this specific context by trialling four methods in parallel: waste bucket analysis; medicine-recording sheets; weekly semi-structured interview and the ‘Drug Bag’. 

To evaluate these methods, we recruited 13 farms into the project. Following an initial interview, we placed waste buckets and medicine recording sheets onto the farms and visited farms approximately weekly for around one month. At each weekly visit, we carried out semi-structured interview to explore instances of ABU over the previous week and completed an audit of the waste bucket and medicine recording sheet. On the final visit we also completed the 'Drug Bag', which is an exercise in which participants sort a bag of antibiotics purchased from the study area into those that have been used during the previous month. Triangulating between these methods allowed us to, both, evaluate the success of each method and explore ABU practices on the study farms. 

In order to provide further insight, we also carried out semi-structured interviews and focus group discussions with animal health professionals operating in the area. We completed three key informant interviews with government veterinarians, one focus group discussion with private veterinarians and one focus group discussion with private animal health assistants.
DOI: 10.34816/efa.archives.360555
title: Philippes-L9368-025A-Forum, côté est, bloc en marbre

description: Référence : L9368-025A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360554
title: Philippes-L9368-024A-Forum, côté est, bloc en marbre

description: Référence : L9368-024A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />
DOI: 10.34816/efa.archives.360553
title: Philippes-L9368-010A-Forum, côté est, bloc en marbre

description: Référence : L9368-010A<br />Publication(s) : Inédit<br />Période(s) : Romain; Antiquité; Impérial<br />Domaine : Architecture<br />