cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.d0s7k
title: Data from: Big biology meets microclimatology: Defining thermal niches of ectotherms at landscape scales for conservation planning

description: Temperature profoundly affects ecology, a fact ever more evident as the
 ability to measure thermal environments increases and global changes alter
 these environments. The spatial structure of thermalscapes is especially
 relevant to the distribution and abundance of ectothermic organisms but
 the ability to describe biothermal relationships at extents and grains
 relevant to conservation planning has been limited by small or sparse
 datasets. Here, we combine a large occurrence database of &gt;23,000
 aquatic species surveys with stream microclimate scenarios supported by an
 equally large temperature database for a 149,000-km mountain stream
 network to describe thermal relationships for 14 fish and amphibian
 species. Species occurrence probabilities peaked across a wide range of
 temperatures (7.0–18.8 °C) but distinct warm- or cold-edge distribution
 boundaries were apparent for all species and represented environments
 where populations may be most sensitive to thermal changes. Warm-edge
 boundary temperatures for a native species of conservation concern were
 used with geospatial datasets and a habitat occupancy model to highlight
 subsets of the network where conservation measures could benefit local
 populations by maintaining cool temperatures. Linking that strategic
 approach to local estimates of habitat impairment remains a key challenge
 but is also an opportunity to build relationships and develop synergies
 between the research, management, and regulatory communities. As with any
 data mining or species distribution modeling exercise, care is required in
 analysis and interpretation of results, but the use of large biological
 datasets with accurate microclimate scenarios can provide valuable
 information about the thermal ecology of many ectotherms and a
 spatially-explicit way of guiding conservation investments.
description: Isaak et al. 2017_BIG
 Biol Meets MicroClim_DatabaseThis is the dataset
 developed for Isaak, Wenger, & Young. 2017. Big biology meets
 microclimatology. Ecological Applications. Species occurrence records are
 linked to reaches in the NHD dataset via the COMID field. See methods
 section in the paper for additional details.
DOI: 10.5061/dryad.c8s05
title: Data from: The effects of tourist and boat traffic on parrot geophagy in lowland Peru

description: Ecotourism generates important revenue in many developing economies, but
 poorly regulated ecotourism can threaten the long-term viability of key
 biological resources. We determined the effects of tourism, boat traffic,
 and natural disturbances on parrot geophagy (soil consumption) across
 seven riverine claylicks in the lowlands of Madre de Dios, Peru. Claylick
 use significantly decreased when visitors did not follow good practice
 guidelines and tourist numbers exceeded the capacity of the observation
 blinds. Otherwise, tourist presence and natural disturbance did not have a
 significant effect. However, large macaws, particularly Red-and-green
 Macaws (Ara chloropterus), avoided visiting claylicks during periods of
 peak tourist numbers. Where parrots had multiple geophagy sites to choose
 from, they preferred sites further from tourist groups. The effect of boat
 disturbance was greatest on a narrow river with infrequent boat events. On
 a wider river with heavier traffic, boat disturbance had less of an effect
 and this effect was inversely proportional to the distance of boats from
 the claylick. Where visitors followed good-practice tourism guidelines,
 they had a low overall negative effect on parrot geophagy. We recommend
 that visitors respect the claylick observation guidelines to minimize
 anthropogenic disturbance on parrots and maintain these sites for the
 benefit of wildlife and humans alike.
description: Tourist flush response
 in relation to disturbance sourceThis .csv file is a
 spreadsheet that contains data used to examine the influence of various
 disturbance sources (reason) at a number of parrot claylicks (Colpa).
 Various date columns exist: date year month; as well as time hour; if the
 data was pre or post 8am: earlylate; the time tourists or other
 disturbance departed depart (but incomplete and so not used); and the
 antipredatory response from birds perched either in the trees or on the
 colpa. This is ranked from 0 (no response) to 5 (maximum disturbance
 response). The number of tourists is recorded if known:
 numbertouristsandflushes.csvCounts of animals observed on riverside claylicks.csv file of counts conducted every 5 minutes of animals using riverside geophagy sites in southeastern Peru. See Readme for more.feeding.csv
DOI: 10.5061/dryad.1bv83
title: Data from: Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient crop

description: The genus Amaranthus consists of 50 to 70 species and harbors several
 cultivated and weedy species of great economic importance. A small number
 of suitable traits, phenotypic plasticity, gene flow and hybridization
 made it difficult to establish the taxonomy and phylogeny of the whole
 genus despite various studies using molecular markers. We inferred the
 phylogeny of the Amaranthus genus using genotyping by sequencing (GBS) of
 94 genebank accessions representing 35 Amaranthus species and measured
 their genome sizes. SNPs were called by de novo and reference-based
 methods, for which we used the distant sugarbeet Beta vulgaris and the
 closely related Amaranthus hypochondriacus as references. SNP counts and
 proportions of missing data differed between methods, but the resulting
 phylogenetic trees were highly similar. A distance-based neighbor joing
 tree of individual accessions and a species tree calculated with the
 multispecies coalescent supported a previous taxonomic classification into
 three subgenera although the subgenus A. Acnida consists of two highly
 differentiated clades. The analysis of the Hybridus complex within the A.
 Amaranthus subgenus revealed insights on the history of cultivated grain
 amaranths. The complex includes the three cultivated grain amaranths and
 their wild relatives and was well separated from other species in the
 subgenus. Wild and cultivated amaranth accessions did not differentiate
 according to the species assignment but clustered by their geographic
 origin from South and Central America. Different geographically separated
 populations of Amaranthus hybridus appear to be the common ancestors of
 the three cultivated grain species and A. quitensis might be additionally
 be involved in the evolution of South American grain amaranth (A.
 caudatus). We also measured genome sizes of the species and observed
 little variation with the exception of two lineages that showed evidence
 for a recent polyploidization. With the exception of two lineages, genome
 sizes are quite similar and indicate that polyploidization did not play a
 major role in the history of the genus.
description: Scrips and raw
 dataThis folder contains
 scripts and datadryad.zip
DOI: 10.15468/dl.cqgjzu
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Laurus novocanariensis"
 ]
}

 The dataset includes 1782 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001491-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.vs1r0
title: Data from: Between-population differences in multi-stressor tolerance during embryo development in the American horseshoe crab, Limulus polyphemus

description: The American horseshoe crab, Limulus polyphemus, is found along the
 Atlantic and Gulf of Mexico coasts in genetically-isolated populations.
 Eggs are laid in shoreline beaches that expose developing embryos to
 combinations of environmental stressors. Whether populations of L.
 polyphemus differ in multi-stressor tolerance had never been tested. We
 assessed the multi-stressor tolerance of L. polyphemus embryos from a
 population in Delaware Bay (DE) and determined whether these differed from
 the multi-stressor tolerance of embryos from a more southerly Florida Gulf
 Coast (FGC) population. We monitored the field sediment temperatures and
 determined multi-stressor tolerance of DE embryos, then compared these to
 published data for FGC embryos. For multi-stressor tolerance, we assessed
 development success of embryos in two-week exposures to 36 fully-factorial
 combinations of temperature (20, 25, 30, 35 °C), salinity (5, 15 and 34
 ppt) and ambient O2 (5, 13 and 21% O2), followed by two-weeks in recovery
 conditions. Sediment temperatures in the DE site ranged from 9.5-46 °C,
 with extended periods exceeding 35 °C. Development success was similar
 between the DE and FGC populations in 14 of 26 multi-stressor
 combinations. The DE embryos were generally more successful in conditions
 that included high temperature or moderate hyposalinity, whereas the FGC
 embryos were generally more successful in conditions that included extreme
 hyposalinity. This suggests that although multi-stressor tolerances are
 generally similar between the two populations, specific differences exist
 that correlate more with differences in nest microenvironment than
 latitude.
description: Slaughter Beach
 Temperature Logger DataContinuous temperature
 logger data (°C, ±0.5°) collected every hour from May 8 to June 27, 2012
 at Slaughter Beach, DE. Data were collected at two tidal heights (extreme
 high and high) and two sediment depths (5 cm and 20 cm below the
 surface).Dryad - Slaughter Beach
 Temperature Data.xlsxEmbryo Cross-Sectional
 Area DataLimulus polyphemus
 embryo cross sectional area (mm) measured for 36 treatment combinations of
 temperature, salinity and oxygen, every 2 days over a 28 day
 period.Dryad - Embryo Cross-Sectional
 Area.xlsx
DOI: 10.15468/dl.ekugd3
title: Occurrence Download

description: A dataset containing 30628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera caerulea"
 ]
}

 The dataset includes 30628 records from 463 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001493-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3pm39
title: Occurrence Download

description: A dataset containing 3247061843 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 1980-2025"
 ]
}

 The dataset includes 3247061843 records from 66768 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031738-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4ppyc
title: Occurrence Download

description: A dataset containing 34593 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iris pseudacorus",
 "Country is Germany",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year 1980-2025",
 {
 "or" : [
 "StateProvince is null",
 "StateProvince is Bayern"
 ]
 }
 ]
}

 The dataset includes 34593 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031907-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7303/syn70283644.1
title: Clinical Dataset
DOI: 10.6084/m9.figshare.27953055
title: Bacterial microbiota in nest samples - Experimental study

description: This study aim at testing the effect of aromatic plants on bacterial microbiota of nest samples in an experimental approach, and on bacterial microbiota of nest material and eggshell and on nestling traits and behavior in an observational approach in Corsican blue tits (Cyanistes caeruleus ogliastrae).The metadata and codes to analysis the data can be found in the following GitHub public repository: To add.<b>Experimental approach</b>We collected natural blue tit nests that have been predated or abandonned by the parents. We subdivised the nest material in nine subsamples that were placed in fake plastic nest boxes for 7 days. Every two days, we added fresh aromatic plant fragments on the top of the nest sample. The treatments corresponded to the addition of five single species (Lavandula stoechas, Mentha suaveolens insularis, Helichrysum italicum, Pulicaria odorata and Achillea ligustica), three combinations of plant duos frequently observed in blue tit nests (Lavandula stoechas and Mentha suaveolens insularis, Lavandula stoechas and Helichrysum italicum, and Mentha suaveolens insularis and Helichrysum italicum), and one control sample with no plant addition. At the end of the experiment, we collected the samples for the study of bacterial microbiota by extracting DNA and amplifing the 16S rARN sequences by PCR. We sequenced the samples with Illumina Mi-Seq.The dataset contains the bacterial forward and reverse reads of:<br>169 nest samples (9 treatments X 19 collected nests - 2 discarded samples)15 fresh plant samples (5 species X 3 samples)2 DNA extraction controls2 negative PCR controls2 positive PCR controls
DOI: 10.6084/m9.figshare.27953055.v1
title: Bacterial microbiota in nest samples - Experimental study

description: This study aim at testing the effect of aromatic plants on bacterial microbiota of nest samples in an experimental approach, and on bacterial microbiota of nest material and eggshell and on nestling traits and behavior in an observational approach in Corsican blue tits (Cyanistes caeruleus ogliastrae).The metadata and codes to analysis the data can be found in the following GitHub public repository: To add.<b>Experimental approach</b>We collected natural blue tit nests that have been predated or abandonned by the parents. We subdivised the nest material in nine subsamples that were placed in fake plastic nest boxes for 7 days. Every two days, we added fresh aromatic plant fragments on the top of the nest sample. The treatments corresponded to the addition of five single species (Lavandula stoechas, Mentha suaveolens insularis, Helichrysum italicum, Pulicaria odorata and Achillea ligustica), three combinations of plant duos frequently observed in blue tit nests (Lavandula stoechas and Mentha suaveolens insularis, Lavandula stoechas and Helichrysum italicum, and Mentha suaveolens insularis and Helichrysum italicum), and one control sample with no plant addition. At the end of the experiment, we collected the samples for the study of bacterial microbiota by extracting DNA and amplifing the 16S rARN sequences by PCR. We sequenced the samples with Illumina Mi-Seq.The dataset contains the bacterial forward and reverse reads of:<br>169 nest samples (9 treatments X 19 collected nests - 2 discarded samples)15 fresh plant samples (5 species X 3 samples)2 DNA extraction controls2 negative PCR controls2 positive PCR controls
DOI: 10.6084/m9.figshare.27953055.v2
title: Bacterial microbiota in nest samples - Experimental study

description: This study aim at testing the effect of aromatic plants on bacterial microbiota of nest samples in an experimental approach, and on bacterial microbiota of nest material and eggshell and on nestling traits and behavior in an observational approach in Corsican blue tits (Cyanistes caeruleus ogliastrae).The metadata and codes to analysis the data can be found in the following GitHub public repository: To add.<b>Experimental approach</b>We collected natural blue tit nests that have been predated or abandonned by the parents. We subdivised the nest material in nine subsamples that were placed in fake plastic nest boxes for 7 days. Every two days, we added fresh aromatic plant fragments on the top of the nest sample. The treatments corresponded to the addition of five single species (Lavandula stoechas, Mentha suaveolens insularis, Helichrysum italicum, Pulicaria odorata and Achillea ligustica), three combinations of plant duos frequently observed in blue tit nests (Lavandula stoechas and Mentha suaveolens insularis, Lavandula stoechas and Helichrysum italicum, and Mentha suaveolens insularis and Helichrysum italicum), and one control sample with no plant addition. At the end of the experiment, we collected the samples for the study of bacterial microbiota by extracting DNA and amplifing the 16S rARN sequences by PCR. We sequenced the samples with Illumina Mi-Seq.The dataset contains the bacterial forward and reverse reads of:<br>169 nest samples (9 treatments X 19 collected nests - 2 discarded samples)15 fresh plant samples (5 species X 3 samples)2 DNA extraction controls2 negative PCR controls2 positive PCR controls
DOI: 10.15468/dl.5qu729
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbodes semifasciolatus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031909-251025141854904/datasets/export for details.
DOI: 10.17632/75vnw8pjzw
title: Soil-Plant-Water

description: This dataset contains all the original data and references used by the author in their research paper.
DOI: 10.17632/75vnw8pjzw.1
title: Soil-Plant-Water

description: This dataset contains all the original data and references used by the author in their research paper.
DOI: 10.6084/m9.figshare.30604640
title: Leigh Restoration Modelling Database

description: A database of species-specific growth and survival rates used in the predictive mathematical modelling of expected forest structures resulting from one of four restoration strategies (i.e., assisted natural restoration, active native planting, broadcast seeding, and carbon planting) at the University of Auckland’s Leigh Farm. This database and associated code were developed as part of a master's thesis (MEcology, University of Auckland) titled "Restoration pathways for coastal Leigh: Reconciling restoration costs, carbon credits, and biodiversity benefits".
DOI: 10.6084/m9.figshare.30604640.v1
title: Leigh Restoration Modelling Database

description: A database of species-specific growth and survival rates used in the predictive mathematical modelling of expected forest structures resulting from one of four restoration strategies (i.e., assisted natural restoration, active native planting, broadcast seeding, and carbon planting) at the University of Auckland’s Leigh Farm. This database and associated code were developed as part of a master's thesis (MEcology, University of Auckland) titled "Restoration pathways for coastal Leigh: Reconciling restoration costs, carbon credits, and biodiversity benefits".
DOI: 10.5281/zenodo.17603542
title: Frictional stability of Pelona–Orocopia–Rand schists under hydrothermal conditions and implications for seismic hazards in Southern California

description: This repository contains raw laboratory friction data, rate-and-state parameters, friction modeling scripts, and field/hand sample photographs.
DOI: 10.5281/zenodo.17603541
title: Frictional stability of Pelona–Orocopia–Rand schists under hydrothermal conditions and implications for seismic hazards in Southern California

description: This repository contains raw laboratory friction data, rate-and-state parameters, friction modeling scripts, and field/hand sample photographs.
DOI: 10.15468/dl.hphnnd
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros del capitán de la sabana Eremophilus mutisii en la sabana de Bogotá"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031911-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqcz9t
title: Occurrence Download

description: A dataset containing 4351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iris sibirica",
 "Country is Germany",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year 1980-2025",
 {
 "or" : [
 "StateProvince is null",
 "StateProvince is Bayern"
 ]
 }
 ]
}

 The dataset includes 4351 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031912-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukqzb6
title: Occurrence Download

description: A dataset containing 872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.41_1, USA.11_1, USA.34_1)",
 "TaxonKey is Urocyon cinereoargenteus"
 ]
}

 The dataset includes 872 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031913-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/zf32uf
title: Replication Data for: Survey Quality and Acquiescence Bias: A Cautionary Tale

description: In this note, we offer a cautionary tale on the dangers of drawing inferences from low-quality online survey datasets. We reanalyze and replicate a survey experiment studying the effect of acquiescence bias on estimates of conspiratorial beliefs and political misinformation. Correcting a minor data coding error yields a puzzling result: respondents with a postgraduate education appear to be the &lt;i&gt;most&lt;/i&gt; prone to acquiescence bias. We conduct two preregistered replication studies to better understand this finding. In our first replication, conducted using the same survey platform as the original study, we find a nearly identical set of results. But in our second replication, conducted with a larger and higher-quality survey panel, this apparent effect disappears. We conclude that the observed relationship was an artifact of inattentive and fraudulent responses in the original survey panel, and that attention checks alone do not fully resolve the problem. This demonstrates how "survey trolls'' and inattentive respondents on low-quality survey platforms can generate spurious and theoretically confusing results.
DOI: 10.7303/syn70283644.2
title: Clinical Dataset
DOI: 10.6084/m9.figshare.25155641
title: Dataset: Estimating competition outcomes between native and invading species using trait and count data

description: Code and data files supporting analyses conducted for framework for estimating competition outcomes between invading and resident species. Data provides example from three resident and three invading gecko species from Curacao.
DOI: 10.6084/m9.figshare.25155641.v2
title: Dataset: Estimating competition outcomes between native and invading species using trait and count data

description: Code and data files supporting analyses conducted for framework for estimating competition outcomes between invading and resident species. Data provides example from three resident and three invading gecko species from Curacao.
DOI: 10.6084/m9.figshare.25155641.v1
title: Competition Outcome Code and Data

description: Code and data files supporting analyses conducted in manuscript for framework for predicting and quantifying competition outcomes between invading and resident species. Data provides example from three resident and three invading gecko species from Curacao.