cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28911293.v1
title: Transcripts of Interviews Conducted for I-WASH case

description: Transcripts of interviews conducted for collaborating actors on a water and sanitation management case in Nigeria.
DOI: 10.17632/ts3chtyp85
title: Data for: Li and B isotopic fingerprint of Archean subduction

description: Li and B isotopic fingerprint of Archean subduction
DOI: 10.6084/m9.figshare.1297321.v1
title: File group profile dataset

description: This dataset contains file group profiles for specific combinations of file formats and their properties. Combinations are defined by the Analysis Groups dataset (X). Currently three different sets are available. PDF_filtered covers PDF file format versions. Years covered are 1996-2010. HTML_filtered coveres HTML and XHTML file format versions. Years covered are 1996-2010. Distiller_filtered coveres 9 major releases of Adobe Distiller. Years covered are 1996-2010. This dataset is an intermediary result of the analysis workflow (https://github.com/datascience/FormatAnalysis). It is created by filtering and conflict reduction of the Format profile dataset from the UK web archive (DOI: 10.5259/ukwa.ds.2/fmt/1). First 2 columns cover combinations of property value pairs for different properties (mime type and software for Distiller_filtered and mie type and version for HTML_filtered and PDF_filtered). Last two columns cover year and amount of files with defined combination of properties that were available in a given dataset (UK web archive format profile) at specific year.
DOI: 10.6084/m9.figshare.16725598.v1
title: Thermal niche adaptations contribute to the biogeographic differentiation of plant heat tolerance

description: File " <b>Data_Master</b>" - Measured plant physiological traits. Note that the file contains missing values.<br>File "<b>24_Species_occurence_GIS</b>" - - Climate data (Annual_mean_temp, Max_temp_warm_month, Annual_precip) are the bioclimatic variables from the WorldClim database for the time period 1970 to 2000.<br>File: <b>24_Species_mean_niche.csv</b>-This dataset is derived from the file: 24 Species_occurrence_GIS.csv dataset and additionally includes the assigned Köppen-Geiger climate zone of species and the calculated origin_MTWM_95 parameter calculated from the SILO_Origin_MTWM.csv dataset<br><b>File: SILO_Origin_MTWM.csv</b>- The climate data Max_daily_temperature is obtained from the SILO database (https://www.data.qld.gov.au/dataset/silo-climate-database) for the month of January during the period 1970 to 2000. Note that the mean climate variable for each species origin are shown in the file: 24_Species_mean_niche.csv<br><br><br>
DOI: 10.6084/m9.figshare.22541605.v7
title: DIPY_EVAC+_test_data

description:   The data is for the EVAC+ model in dipy
DOI: 10.4225/49/581cf15db938d
title: Code needed to run the transcom ensemble weighted probability case for "Data Assimilation using an Ensemble of Models: A hierarchical approach", Geoscience Model Development Discussions, 2016 w draft item

description: hTis is The python code needed to run the example transcom case described in Rayner 2016. The file will generate all of the figures by typing %run transcom_probability at an ipython prompt. It will generate all of the figures plus the underlying ensemble statistics for future calculations. It also contains function to generate the Bayes Factor or, as I call it here, Jaynes Information Criterion<br>
DOI: 10.6084/m9.figshare.18516128.v1
title: Data used for SOTIP demonstration

description: Dataset for demonstration SOTIP utility
DOI: 10.6084/m9.figshare.28931240.v1
title: Data availability.xlsx

description: Data from the study Palliative care competencies: a bioethical analysis of medical students’ education.
DOI: 10.6084/m9.figshare.833857.v2
title: Tau trace of CG class C with 128 processors on Graphene

description: This is a Tau trace of the NASPB CG Benchmark obtained by Georges Markomanolis on the Graphene cluster.
DOI: 10.17632/5yrd8k7syp
title: Population data of 23 Y chromosome STR loci for Kyrgyz population from Kyrgyzstan

description: These population data represent 23 Y-STR loci from 514 unrelated Kyrgyz males sampled from three geographically distinct regions: Northern East (N=134), Northern West (N=183), and Southern Kyrgyzstan (N=197):
Table S1. The haplotype distributions of 23 Y-chromosomal STRs form Kyrgyz population (N=514).
Table S2. The haplotype frequencies of 23 Y-chromosomal STRs in Kyrgyz population (N=514).
Table S3. Allele frequencies and Forensic parameters values for 21 single-locus Y-STRs in Kyrgyz population (N=514).
Table S4. Locus-specific haplotypes frequencies and Forensic parameters values for DYS385a/b in Kyrgyz population (N=514).
Table S5. Abnormal alleles detected in Kyrgyz population.
Table S5. Pairwise genetic distance (RST) between Kyrgyz populations and neighboring populations used for comparison from YHRD on 17 Y-STRs.
DOI: 10.6084/m9.figshare.23504922.v1
title: Gold Standard/Manual Reviewed Annotated Datasets for Technical Validation

description: This page shares the technical validation datasets used to evaluate <em>a</em> <em>Large Dataset of Annotated Incident Reports on Medication Err</em>ors and its machine annotator. The files contain in this repository include the IFMIR gold standard dataset (CrossValid_IFMIR_522.xlsx), randomly sampled labeled incident reports from 2010 – 2020 (InternalValid_JQ2010-20_40.xlsx), randomly sampled labeled incident reports from 2021 (ExternalValid_JQ2021_20.xlsx) and Error-free reports (Error_analysis.xlsx). <br> To use any of these datasets, one should also cite this original data source: Medical Adverse Event Information Collection Project [Iryō jiko jōhō shūshū-tō jigyō] Japan Council for Quality Health Care; 2022 [Available from: https://www.med-safe.jp/index.html.]
DOI: 10.6084/m9.figshare.7276880.v1
title: Supplementary Material for: Vascular Calcification Markers and Hemodialysis Vascular Access Complications

description: <b><i>Background:</i></b> Arteriovenous (AV) access dysfunction is a common complication in hemodialysis patients. Markers of vascular calcification are associated with cardiovascular outcomes and mortality in this population, but their association with vascular access outcomes is unknown. In this study, we aimed to evaluate the association between selected vascular calcification makers and vascular access complications in a cohort of hemodialysis patients. <b><i>Method:</i></b> Fetuin-A, osteopontin (OPN), osteoprotegerin (OPG), and bone morphogenetic protein-7 (BMP-7) were measured in blood samples from 219 dialysis patients in the Choice for Healthy Outcomes in Caring for end-stage renal disease study; these patients were using a permanent vascular access. Participants were followed for up to 1 year or until the occurrence of a vascular access intervention or replacement. Associations with AV fistula (AVF) and AV graft (AVG) intervention-free survival were assessed in models adjusted for demographic characteristics, comorbidities, and inflammation. <b><i>Results:</i></b> A total of 24 out 103 participants with an AVF and 43 out of 116 participants with an AVG had an intervention during follow-up. Lower fetuin-A, higher OPN, and higher BMP-7 were associated with a higher risk of AVF intervention (adjusted hazard ratios [aHR] for highest versus lowest tertile = 0.30 [95% CI 0.10–0.94]) for fetuin-A, 3.84 (95% CI 1.16–12.74) for OPN, and 3.49 (95% CI 1.16–10.52) for BMP-7. OPG was not significantly associated with the risk of AVF intervention. The associations of OPN and BMP-7 with AVF intervention appeared stronger among participants without diabetes (aHR 8.06; 95% CI 1.11–58.57 for OPN and aHR 2.55; 95% CI 1.08–6.08 for BMP-7, respectively) than among their counterparts with diabetes (<i>p</i> interaction = 0.06). None of the markers studied were significantly associated with AVG interventions. <b><i>Conclusion:</i></b> Lower fetuin-A and higher OPN and BMP-7 are associated with complications in AVF but not in AVG, suggesting a role for calcification in the pathogenesis AVF failure.
DOI: 10.17632/fjnbmmy68d
title: Universidad de Santander. Informe de gestión 2023 Vicerrectoría de Investigaciones

description: Contexto del informe 

Durante el año 2023, el direccionamiento estratégico institucional de la investigación se orientó al abordaje interdisciplinar, intercampus e interinstitucional, considerando que la solución de problemas complejos requiere la integración de conocimientos y capacidades. 

Los logros, avances y oportunidades de mejora, se presentan de manera integrada de los tres campus y se hará mención en detalle en cada campus. En ese sentido el informe incluye, las principales acciones realizadas desde la vicerrectoría de investigaciones para impulsar la investigación en el proceso formativo y en la generación de nuevo conocimiento. 

En investigación formativa, presentan los resultados de las diferentes acciones llevadas a cabo para la obtención del reconocimiento público del desempeño de nuestros estudiantes en los encuentros externos de carácter regional y nacional que dan cuenta del compromiso institucional, de los tutores y los jóvenes en formación. 

En la investigación científica y en investigación+creación, se presenta el avance en el trabajo interdisciplinar, tanto en la formulación de propuestas de investigación como en la socialización de los resultados. Así mismo en los proyectos financiados con recursos externos que se encuentran en ejecución y cierre se presenta de manera ejecutiva algunos logros 

De otra parte, como parte de los procesos administrativos y de gestión en el informe se incluye el avance en el sistema de información de investigaciones y el estado actual de los trámites regulatorios establecidos para investigación en recursos biológicos y recursos genéticos. 

 
Objetivos 

Identificar capacidades y oportunidades de la Universidad de Santander para el avance en investigación interdisciplinar para el cumplimiento de la misión institucional. 
Identificar los principales logros y lecciones aprendidas que permitan un mejoramiento continuo institucional. 
Analizar la conformación de grupos de trabajo para la formulación y participación en convocatorias.
DOI: 10.6084/m9.figshare.15103092.v2
title: Weakfish SIA Data_Delaware Bay 2017 and 2018

description: This dataset includes an abundance of delta 13C and delta 15N stable isotope ratios of juvenile Weakfish caught in 2017 and 2018 from the Delaware Bay, USA. The GPS coordinates of the sampling stations can be provided on an individual basis.
DOI: 10.6084/m9.figshare.25562208.v1
title: grainspace wheat p600 2/3 3/3

description: grainspace wheat p600 2/3 3/3
DOI: 10.6084/m9.figshare.23254451.v2
title: GNNWLR Code and Data

description: GNNWLR Code, and Data.
DOI: 10.6084/m9.figshare.23618382.v1
title: Early onset diagnosis in Alzheimer's disease patients via amyloid-β oligomers-sensing probe in cerebrospinal fluid

description: The Source Data discussed in this study are presented.
DOI: 10.6084/m9.figshare.28600646.v3
title: Empirical Study Results and Corresponding Datasets for Paper No. 595

description: This repository contains the first comprehensive dataset of Embedded AI and Robotics (EAIR) systems and the first dataset of 885 EAIR bugs, providing a crucial foundation for research in EAIR system security.Repository Contents1. Labeled_bug_sheets.csvContains 885 labeled EAIR system bugsEach record includes detailed bug attributes and classifications2. EAIR_bug_dataset.zipRaw bug data crawled from GitHub, consisting of three files:<b>github_commits.json</b>: Code commit records related to EAIR bugs<b>github_issues.json</b>: Issue reports related to EAIR bugs<b>github_pull_requests.json</b>: Pull requests related to EAIR bugs3. EAIR_system_dataset.zipContains complete repositories of collected EAIR components<br>
DOI: 10.6084/m9.figshare.20602536.v1
title: Natural Growth Rates of Population (‰) in Mainland China

description: Natural Growth Rates of Population (‰) in Mainland China (1962 to 2021)
DOI: 10.6084/m9.figshare.13355951.v1
title: Supplemental Table S7

description: Functions enriched amongst gene sets analyzed with PANTHER databases. Sets of gene names corresponding to significant COGs, SNPs, and k-mers were created as described in the Materials and Methods section. FDR means False Discovery Rate.
DOI: 10.6084/m9.figshare.24342550.v2
title: Fungal composition associated with host tree identity mediates nutrient addition effects on wood microbial respiration

description: This study was conducted at theTiantong National Station for Forest Ecosystem Research (29°48′N, 121°47′E), which is located at Ningbo, Zhejiang Province, China. We combined field and laboratory experiments to examine how nutrient (nitrogen [N] and phosphorus [P]) additions and warming together influence fungal composition and microbial respiration in decomposing wood of angiosperms and gymnosperms. Our results suggest the key role of tree species in regulating nutrient response of wood microbial respiration through controlling fungal composition.
DOI: 10.17632/dscx426m45
title: E-Commerce Companies in the United Arab Emirates (UAE) - Domain Names and Product Categories

description: A dataset of the top 10,000 E-Commerce Companies in the United Arab Emirates (UAE), to accompany the paper that describes the analysis of domain names and product categories.
DOI: 10.6084/m9.figshare.20422926.v1
title: RAW DATA.xlsx

description: <strong>DEPRESSION, ANXIETY, AND PSYCHOLOGICAL DISTRESS IN VIETNAMESE PHARMACY AND NON-PHARMACY STUDENTS DURING THE COVID-19 PANDEMIC</strong>
DOI: 10.6084/m9.figshare.3485201.v4
title: Metadata file from the manuscript 'Alterations in airway microbiota in patients with acute lung injury after burn and inhalation injury'

description: Metadata file for 16S rRNA gene sequencing done on airway samples from victims of burn and inhalation injury.Duplicate barcoded paired-end reads were sequenced on the Illumina MiSeq using the molecule tagging method described by Lundberg et. al. (Nature Methods, 2013, DOI: 10.1038/nmeth.2634) and the OTU table was generated using the MTToolbox pipeline (Yourstone, 2015, BMC Bioinformatics, DOI: 10.1168/1471-2105-15-284). The OTU table was imported into the program Explicet (www.explicet.org; Robertson et. al., Bioinformatics, 2013, DOI: 10.1093/bioinformatics/btt526), OTUs identified as the same species were condensed, and this table was exported and used for analysis in R.
DOI: 10.6084/m9.figshare.7763438.v1
title: ATACseq_QC_plot

description: The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenomics approach and has been widely used in profiling the chromatin accessibility dynamics in multiple species. A comprehensive reference of ATAC-seq datasets for mammalian tissues is important for the understanding of regulatory specificity and developmental abnormality caused by genetic or environmental alterations. Here, we report a mouse ATAC-seq atlas by producing a total of 66 ATAC-seq profiles from 20 primary tissues of both male and female mice. The ATAC-seq read enrichment, fragment size distribution, and reproducibility between replicates demonstrated the high quality of the full dataset.
DOI: 10.57945/manara.26984785.v2
title: Arabic OCR Corpus v.2 (2,894 items from QNL Collection)

description: <b>Dataset contents</b>This dataset is an OCR text corpus of 2,984 printed works (monographs and serials) from the collection of the Qatar National Library. All works are mostly in Arabic language, but fragments of texts in other languages can also be found. Besides the OCR text, the basic descriptive metadata for each item is also provided.<b>Release note for version 2 of the dataset</b>The dataset of OCRed Arabic books has been fully updated to ensure consistency and quality. All items in the dataset have now been processed using the latest retrained data. Furthermore, every item has undergone a thorough visual quality assurance check conducted using a representative sample of pages. This update has resulted in a significant enhancement of word-level accuracy across the entire dataset, ensuring higher reliability and usability.The exact list of files changed between version 1 and version 2 of the dataset can be determined by comparing the SHA256 checksums provided with each dataset version (see below for details).<b>Dataset structure</b>The dataset consists of three files:<b>QNL-ArabicContentDataset-Metadata.csv</b> and <b>QNL-ArabicContentDataset-Metadata.xlsx</b> contain the same basic metadata of 2,894 items from the Qatar National Library collection. Both files have the same content and are structured into the following columns:CALL #(ITEM) - Item call number in the QNL catalogRECORD #(ITEM) - Item record number in the QNL catalog (unique for each item)Repository URL - URL to digitized item content in the QNL repositoryCatalog URL - URL to the complete item metadata record in the QNL catalogAUTHOR - Main author information for the itemADD AUTHOR - Additional author information for the itemPUB INFO - Item publication infoTITLE - Item titleDESCRIPTION - Item descriptionVOLUME - Item volume information (in case of some serial publications)<b>QNL_ArabicOCR_Corpus-v2.zip</b> contains:2,894 text files with the following naming pattern: <b>[unique item record number]-[unique item QNL repository id].txt</b>. The unique item record number should be used to match each file with a related metadata record. Each file contains text extracted from a particular item using OCR software.<b>checksums.sha256</b> - contains SHA256 checksums for all 2,894 text files<br>
DOI: 10.6084/m9.figshare.26384347.v1
title: Figure 8: Disease scores of mice infected with <i>P. aeruginosa</i> Xen41 following peptoid or antibiotic treatment

description: BALB/c mice were infected with <i>P. aeruginosa</i> via the intratracheal route and treated with TM1, TM5, TM6, or ciprofloxacin. A modified Karnofsky score was used to score any adverse effects observed over the course of the infection. (A) Average overall Karnofsky scores for each group of mice tested from 0 hours to 72 hours, with variance represented as SD. (B) Average Karnofsky scores for each group of mice over time, split into various categories tested. Columns marked with an ‘X’ indicate where a mouse was sacrificed ahead of schedule.
DOI: 10.6084/m9.figshare.9164999.v1
title: Supplemental data from Novel cooperative antipredator tactics of an ant specialized against a snake

description: The full dataset used for analyses in this study.
DOI: 10.6084/m9.figshare.1054736.v2
title: Arctic 2k v1.1.1

description: These data are well described in the Nature Scientific Data data descriptor: "An extended Arctic proxy temperature database for the past 2,000 years". ***Version 1.1.1 update**** Within the zip file are the v1.1.1 files, as well as three excel tables. 1) MetadataTablev1.1.1.xlsx Which lists the site information and metadata for each site as in table 1 of the Scientific Data articles 2) Revisions_v1.1.1.xlsx Which lists and describes the changes between versions 3) Reconstruction_Arc2kv1.1.1.xlsx Which includes the data for the annual, 30-year and 100-year mean Arctic temperature reconstruction based on the v1.1.1 data.
DOI: 10.6084/m9.figshare.13876862.v2
title: Supplemental Tables S3.3, S3.4, S3.5, and S3.6

description: <b>TABLE S3.3. Lists of all DEGs, Enriched GO terms, and KEGG Pathways Identified as Differentially Expressed in at Least One Comparison. </b><b>Analysis was completed with Blast2GO.</b><b><br></b><b><br></b><b><br></b> <b> </b> <b> </b> <b> </b> <b>TABLE S3.4. A List of the Top 250 Genes with Greatest Relative Importance in Predicting an Environmental Variable with a Specified Artificial Neural Network Model. If a gene is included in a variable’s list of top 250, it is marked with an “x”. The R values were calculated with Pearson’s correlation using the expected and actual values following ANN training. The SSE values represent the model’s sum of squares error. The overall top 250 genes across all samples were selected for further ANN analysis. </b> <b><br></b><b><br></b><b><br></b><b>TABLE S3.5. The Relative Importance of 250 <i>O. Lurida</i> genes in Predicting an Environmental Variable with a Specified Artificial Neural Network Model. The R values were calculated with Pearson’s correlation using the expected and actual values following ANN training. The SSE values represent the model’s sum of squares error.</b> <b><br></b><b><br></b><b><br></b><b>TABLE S3.6. The Relative Importance of Each Environmental Variable in Predicting the Gene Expression of 1920 <i>O. Lurida</i> Differentially Expressed Genes Through a Specified Artificial Neural Network Model. The R values were calculated with Pearson’s correlation using the expected and actual values following ANN training. The SSE values represent the model’s sum of squares error.</b>
DOI: 10.6084/m9.figshare.2061645.v1
title: Data Base (raw)

description: here is the raw data used for most of the analysis in the paper<br>
DOI: 10.6084/m9.figshare.22015151.v1
title: Supplementary Material for: Blood Biomarkers of Neuronal/Axonal and Glial Injury in Human Immunodeficiency Virus-Associated Neurocognitive Disorders

description: <b><i>Introduction:</i></b> Approximately half of the people living with HIV (PLWH) experience HIV-associated neurocognitive disorders (HANDs). However, the neuropathogenesis of HAND is complex, and identifying reliable biomarkers has been challenging. <b><i>Methods:</i></b> This study included 132 participants aged 50 and older from greater San Diego County. The participants were divided into three groups: PLWH with HAND (<i>n</i> = 29), PLWH without HAND (<i>n</i> = 73), and seronegatives without cognitive impairment (<i>n</i> = 30). Peripheral blood was collected at the clinical assessment, and plasma levels of neurofilament light chain (NfL), phosphorylated Tau 181 (pTau181), and glial fibrillary acidic protein (GFAP) were measured by enzyme-linked immunosorbent assay (ELISA). <b><i>Results:</i></b> Plasma levels of NfL (but not pTau181 and GFAP) were significantly associated with HAND at a medium effect size (<i>p</i> = 0.039, Cohen’s <i>d</i> = 0.45 for HAND + vs. HAND−). Notably, higher levels of NfL were significantly associated with HAND diagnosis even after adjusting for sex. <b><i>Discussion:</i></b> Our data suggest that neuronal degeneration (as evidenced by increased levels of NfL), but not tau pathology or glial degeneration, is related to cognitive status in PLWH. Our results corroborate the view that blood NfL is a promising biomarker of cognitive impairment in PLWH.
DOI: 10.15482/usda.adc/1324304
title: Composition of Foods Raw, Processed, Prepared USDA National Nutrient Database for Standard Reference, Release 28