cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0188663.10fu
title: SH0188663.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188664.10fu
title: SH0188664.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188665.10fu
title: SH0188665.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188666.10fu
title: SH0188666.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188667.10fu
title: SH0188667.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.p4dg5y
title: Occurrence Download

description: A dataset containing 22458106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is 2024",
 "Month is November"
 ]
}

 The dataset includes 22458106 records from 913 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001881-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18201938
title: Code and dataset for "Immersion Freezing at Topographic Active Sites: Dual-Barrier Prediction of Ice Nucleation Temperatures"

description: This Zenodo archive contains the data and analysis notebook associated with the ice-WEDGE workflow for predicting heterogeneous ice nucleation temperatures and critical nucleus geometry in wedge-shaped surface defects, using a Gaussian-process regression (GPR) model trained on HINT-calculated results.

This deposit corresponds to the actively maintained code and documentation hosted in the Molinero Group’s ice-wedge GitHub repository (https://github.com/Molinero-Group/ice-wedge). Users are welcome to use and redistribute the materials in this archive; however, the code and associated datasets remain the intellectual property of the authors and must be cited appropriately (please cite the associated paper and, where relevant, this Zenodo record/DOI).

Authors/Contributors: Ingrid de Almeida Ribeiro (University of Utah), Yuqing Qiu (University of Tennessee, Knoxville), Esteban Gadea (University of Utah), Atanu Metya (IIT Patna).Supervision: Prof. Valeria Molinero (University of Utah).

Questions / support:Ingrid de A. Ribeiro (ingrid.ribeiro@utah.edu)Yuqing Qiu (yuqingqiu@utk.edu)You may also submit questions via the GitHub issue tracker.

Funding: This work was supported by the Air Force Office of Scientific Research (AFOSR), grant FA9550-20-1-0351.
DOI: 10.5281/zenodo.18201939
title: Code and dataset for "Immersion Freezing at Topographic Active Sites: Dual-Barrier Prediction of Ice Nucleation Temperatures"

description: This Zenodo archive contains the data and analysis notebook associated with the ice-WEDGE workflow for predicting heterogeneous ice nucleation temperatures and critical nucleus geometry in wedge-shaped surface defects, using a Gaussian-process regression (GPR) model trained on HINT-calculated results.

This deposit corresponds to the actively maintained code and documentation hosted in the Molinero Group’s ice-wedge GitHub repository (https://github.com/Molinero-Group/ice-wedge). Users are welcome to use and redistribute the materials in this archive; however, the code and associated datasets remain the intellectual property of the authors and must be cited appropriately (please cite the associated paper and, where relevant, this Zenodo record/DOI).

Authors/Contributors: Ingrid de Almeida Ribeiro (University of Utah), Yuqing Qiu (University of Tennessee, Knoxville), Esteban Gadea (University of Utah), Atanu Metya (IIT Patna).Supervision: Prof. Valeria Molinero (University of Utah).

Questions / support:Ingrid de A. Ribeiro (ingrid.ribeiro@utah.edu)Yuqing Qiu (yuqingqiu@utk.edu)You may also submit questions via the GitHub issue tracker.

Funding: This work was supported by the Air Force Office of Scientific Research (AFOSR), grant FA9550-20-1-0351.
DOI: 10.15156/bio/sh0188668.10fu
title: SH0188668.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.26302/sshade/experiment_ro_20240312_001
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of spherical salty ice particles (67 µm average diameter) produced by freezing droplets of a solution of 5wt.% NaCl

description: Spherical ice particles are produced by spraying droplets of salt solution (5 wt.% NaCl) into liquid nitrogen with the SPIPA-B setup. A centimeter-thick sample made of these particles is then introduced in the SCITEAS-2 simulation chamber and its slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging. The surface temperature of the sample is monitored continuously using a thermopile sensor, which measures the thermal emission in the far infrared.
DOI: 10.25386/genetics.28327211
title: Supplemental Material for Thornton <i>et al</i>., 2025

description:  Ribosomal DNA (rDNA) in eukaryotes is maintained in hundreds of copies with rDNA copy number varying greatly among individuals within a species. In the budding yeast <em>Saccharomyces cerevisiae</em>, the rDNA copy number across wild isolates ranges from 90 to 300 copies. Previous studies showed that 35 rDNA copies are sufficient for ribosome biogenesis in this yeast and enable wild-type-like growth in standard laboratory growth conditions. We addressed two major questions concerning rDNA copy number variation in this yeast: (1) What are the fitness consequences of rDNA copy number variation outside and within the natural range in standard laboratory growth conditions? (2) Do these fitness effects change in different growth conditions? We used growth competitions to compare the fitness effects of rDNA copy number variation in otherwise isogenic strains whose rDNA copy number ranged from 35 to 200. In standard growth conditions, we found that fitness gradually increases from 35 rDNA copies until reaching a plateau that spans from 98 to 160 rDNA copies, well within the natural range. However, rDNA copy number-dependent fitness differed across environments. The gradual fitness increase with increasing rDNA copy number in standard growth conditions gave way to a markedly lower fitness of strains with copy numbers below the natural range in these two stress conditions. These results suggest that selective pressures drive rDNA copy number in this yeast to at least ~100 copies and that a higher number of copies buffers against environmental stress. The similarity of the <em>S. cerevisiae </em>rDNA copy number range to the ranges reported in<em> C. elegans, D. melanogaster,</em> and humans points to conserved selective pressures maintaining the range of natural rDNA copy number in these highly diverse species.
DOI: 10.25386/genetics.28327211.v1
title: Supplemental Material for Thornton <i>et al</i>., 2025

description:  Ribosomal DNA (rDNA) in eukaryotes is maintained in hundreds of copies with rDNA copy number varying greatly among individuals within a species. In the budding yeast <em>Saccharomyces cerevisiae</em>, the rDNA copy number across wild isolates ranges from 90 to 300 copies. Previous studies showed that 35 rDNA copies are sufficient for ribosome biogenesis in this yeast and enable wild-type-like growth in standard laboratory growth conditions. We addressed two major questions concerning rDNA copy number variation in this yeast: (1) What are the fitness consequences of rDNA copy number variation outside and within the natural range in standard laboratory growth conditions? (2) Do these fitness effects change in different growth conditions? We used growth competitions to compare the fitness effects of rDNA copy number variation in otherwise isogenic strains whose rDNA copy number ranged from 35 to 200. In standard growth conditions, we found that fitness gradually increases from 35 rDNA copies until reaching a plateau that spans from 98 to 160 rDNA copies, well within the natural range. However, rDNA copy number-dependent fitness differed across environments. The gradual fitness increase with increasing rDNA copy number in standard growth conditions gave way to a markedly lower fitness of strains with copy numbers below the natural range in these two stress conditions. These results suggest that selective pressures drive rDNA copy number in this yeast to at least ~100 copies and that a higher number of copies buffers against environmental stress. The similarity of the <em>S. cerevisiae </em>rDNA copy number range to the ranges reported in<em> C. elegans, D. melanogaster,</em> and humans points to conserved selective pressures maintaining the range of natural rDNA copy number in these highly diverse species.
DOI: 10.15468/dl.b88bat
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Artenvielfalt am Eich-Gimbsheimer Altrhein",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 361 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217895-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tmxrr
title: Occurrence Download

description: A dataset containing 39489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sterna paradisaea Pontoppidan, 1763",
 "Year 2007-2008"
 ]
}

 The dataset includes 39489 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230278-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ckutg
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Blanus alexandri Sindaco, Kornilios, Sacchi & Lymberakis, 2014, Blanus aporus Werner, 1898, Blanus strauchi (Bedriaga, 1884))",
 "Year 1980-2022"
 ]
}

 The dataset includes 80 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211209-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5rkkk
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alces alces (Linnaeus, 1758), Sus scrofa Linnaeus, 1758)",
 "HasCoordinate is one of (true)",
 "Country is one of (Ukraine)",
 "Geometry POLYGON ((35.45321 50.36227, 35.66187 50.88181, 36.76558 50.81935, 36.61732 49.47762, 36.00781 49.45976, 35.45321 50.36227))"
 ]
}

 The dataset includes 84 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230298-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdbb9n
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Kiesbagger (Mittelhausen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 97 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217973-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63k5mm
title: Occurrence Download

description: A dataset containing 326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium fulvescens Norrl."
 ]
}

 The dataset includes 326 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244391-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ammj5k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jejewoodia linusii J.J.Wood & A.Lamb"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256688-230224095556074/datasets/export for details.
DOI: 10.15468/dl.pmrvq3
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Biologische Station im Kreis Wesel",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 86 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217966-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vn6fnj
title: Occurrence Download

description: A dataset containing 4690 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagarosiphon major (Ridl.) Moss"
 ]
}

 The dataset includes 4690 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002853-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s5k3e
title: Occurrence Download

description: A dataset containing 1407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Loïc SALAUN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 1407 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217897-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8snk8d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyhelminthes",
 "DatasetKey is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de BOURRU Rémi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211216-230224095556074/datasets/export for details.
DOI: 10.15468/dl.xx5hdf
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leichhardtia assimulata (S.Moore) Liede, Gâteblé & Meve"
 ]
}

 The dataset includes 136 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005583-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7r3za5
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis stolonifera C.B.Clarke"
 ]
}

 The dataset includes 78 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217960-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvv54r
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum moniliforme C.S.P.Parish & Rchb.f."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256692-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kz49d
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calopogonium lanceolatum Brandegee"
 ]
}

 The dataset includes 47 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222438-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuzxpa
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-72.57 6.27,-72.15 6.27,-72.15 7.17,-72.57 7.17,-72.7612 7.15712,-72.74289 6.27047,-72.57 6.27))",
 "TaxonKey is Cavendishia Lindl."
 ]
}

 The dataset includes 21 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230264-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.