cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24841269.v4
title: Source Data for Savinov and Swanson et al. 2025

description: Source Data associated with the following article:A. Savinov, S. Swanson, A. E. Keating, G.-W. Li. High-throughput discovery of inhibitory protein fragments with AlphaFold. <i>PNAS</i> <b>122</b> (6) e2322412122 (2025). doi: 10.1073/pnas.2322412122. https://www.pnas.org/doi/10.1073/pnas.2322412122.Please cite this article if you make use of these data.Code associated with this article, and to run FragFold on any protein of interest, can be found at: https://github.com/swanss/FragFold.
DOI: 10.6084/m9.figshare.3826644.v1
title: Survey Sampling Hair and Eye Colour Of Students

description: A survey sampling the hair and eye colours of 15 students in laboratory 7 of the course Biology 2050 was conducted. The way in which this survey was conducted was by orally questioning the students. It is hypothesized that there will be a correlation between the dominant phenotypes for hair as well as eye colour. The colours that are expected to occur most frequently are brown for eye colour and black for hair colour.
DOI: 10.6084/m9.figshare.22298893.v1
title: feno

description: According to the FeNO value at the first visit, the subjects were divided into different high- and low-FeNO groups according to the ATS guidelines and the Chinese multicenter study recommendations.
DOI: 10.17632/zb3w2hzbsh
title: Data for: Phytomonitoring study on intra urban variations of leaves parameters of some evergreen and deciduous trees
DOI: 10.6084/m9.figshare.16918519.v1
title: Data set for publication in Applied Sciences

description: Data set corresponding to the figures shown in the submitted paper "Recent advances in characterizing water weakening and fluid-rock interaction processes in porous rocks"by Davide Geremia, Christian David, Rachid Ismail and Alae El Haitami
DOI: 10.6084/m9.figshare.22022540.v3
title: Annotated dataset for deep-learning-based bacterial colony detection

description: Quantifying bacteria per unit mass or volume is a common task in various fields of microbiology (e.g., infectiology, and food hygiene). Most bacteria can be grown on culture media. The unicellular bacteria reproduce by dividing into two cells, which increases the number of bacteria in the population. Methodologically, this can be followed by culture procedures, which mostly involve determining the number of bacterial colony-forming units on the solid culture media that are visible to the naked eye. However, it is a time-consuming and laborious professional activity. Addressing the automation of colony-forming unit counting by convolutional neural networks in our work, we have cultured 24 bacteria species of veterinary importance with different concentrations on solid media. A total of 56,865 colonies were annotated manually by bounding boxes on the 369 digital images of bacterial cultures. The published database will help developments that use artificial intelligence to automate the counting of bacterial colony-forming units.
DOI: 10.6084/m9.figshare.28170533.v1
title: Repetitive sequences statistic of NMR, mice and human.

description: This table includes statistics of repetitive sequences of NMR, mice and human.
DOI: 10.6084/m9.figshare.5966671.v3
title: Closed Doors Everywhere? A Meta-Analysis of Field Experiments on Ethnic Discrimination in Rental Housing Markets

description: Discrimination is long seen as a meaningful factor for ethnic inequalities on rental housing markets. Yet empirically, the extent of discrimination is still debatable. For the first time, this article provides a quantitative meta-analysis of 71 experimental studies (in person audits and correspondence tests) that were run over the last four decades in the United States, Canada and Europe. Special focus is given to a possible inflation of effect sizes by publication bias; to time trends; and to evidence for statistical discrimination. Taken together, nearly all experiments document the occurrence of ethnic discrimination. Although the effect sizes are inflated by publication bias, there is still substantial evidence left once this the bias is removed. <br>
DOI: 10.25420/britishmuseum.28164767.v1
title: _Interview Georginah Kabe

description: Interview with Georgina Kabe, conducted with Nichodimus Cooper at Lokgwabe in Khoekhoegowab (Khoekhoe/Nama language)
DOI: 10.6084/m9.figshare.14960006.v2
title: Data for reproducing Webster figures

description: # Data for reproducing Webster figures<br>This zip file contains the file structure and input data for plugging into the Webster figure generation code repo (https://github.com/joshbiology/gene_fn).<br>For flat files and Excel spreadsheets containing the actual output of Webster, see our other Figshare (10.6084/m9.figshare.14963561).<br>This folder is strucured as follows:<br>```data├── interim│ ├── biomarker│ └── matlab│ ├── depmap_deep│ ├── depmap_denoise│ ├── depmap_grid│ ├── depmap_wide│ ├── durocher│ ├── durocher_no_graph│ └── synthetic└── raw ├── depmap ├── durocher ├── genesets ├── hart ├── humancellmap ├── nusiance_genesets └── prism```<br><br>## raw<br>This folder contains tables from other resources, described below.<br>* depmap<br>https://depmap.org/<br>* durocher<br>https://pubmed.ncbi.nlm.nih.gov/32649862/<br>* genesets<br>Custom genesets from:<br>* * STAGA/ATAC complexes (Spedale et al., 2012)* * SWI/SNF complexes (Mashtalir et al., 2018).* * Mediator complex (Tsai et al., 2014). * * Integrator complex (Pfleiderer and Galej, 2021; Sabath et al., 2020; Tilley et al., 2021; Zheng et al., 2020)<br><br>* hart<br>Common essential genesets from Hart et al. 2015<br>* humancellmap<br>Subcellular localization info from https://humancellmap.org/ and Go et al. 2021.<br>* nusiance_genesets<br>Genesets from HUGO.<br>* prism<br>Compound sensitivity data from https://depmap.org/repurposing/ and Corsello et al 2020.<br><br>## interim<br>This folder contains MATLAB files (.mat) that are the output of the dual-graph regularized dictionary learning applied with this codebase (https://github.com/joshbiology/graph_dictionary_learning) on preprocessed input data contained here (10.6084/m9.figshare.14963561).<br>* depmap_deep<br>Input: DepMap data. Output: sweep over a few values of k, at t=4 and multiple random seeds.<br>* depmap_denoise<br>Input: DepMap data with added noise. Output: Dictionaries (k=220, t=4) learned on noisy DepMap data.<br>* depmap_grid<br>Input: DepMap data. Output: sweep over many values of k and t.<br>* depmap_wide<br>Input: DepMap data. Output: sweep over many values of k, and t = 4 and the same random seed.<br>* durocher<br>Input: genotoxic fitness data (Olivieri et al 2020). Output: sweep over many values of k, at t=1,2.<br>* durocher_no_graph<br>Input: genotoxic fitness data (Olivieri et al 2020). Output: sweep over many values of k, at t=1,2, with alpha and beta set to 0. <br>* synthetic<br>Input: Synthetic fitness data.<br><br>VersionsV1: Initial commitV2: Cached additional intermediate data in the interim folder.
DOI: 10.6084/m9.figshare.24658494.v1
title: Near-real-time monitoring of global ocean carbon sink for 2022-2023

description: We present a near-real-time, monthly grid-based dataset of global ocean CO2 concentrations and ocean-atmosphere CO2 flux from January 2022 to July 2023, which called Carbon Monitor Ocean (CMO-NRT). The data have been derived by updating the estimates from 10 Global Ocean Biogeochemical Models and 8 data products in the Global Carbon Budget 2022 to a near-real-time framework. This is achieved by employing Convolutional Neural Networks and semi-supervised learning methods to learn the non-linear relationship between the estimates from models or products and the observed predictors.
DOI: 10.17632/49y4zjx9tj
title: Olive fruit X-ray microtomography image dataset
DOI: 10.17632/mfgxrhmm8w
title: Typhoon-induced suspended sediment dynamics in the mouth-bar region of a river/wave-dominated estuary

description: The database includes 4 parts: the statistical observation results of 2 near bottom observation stations; The time series of windspeed and direction at Macau station, collected from the National Centers for Environmental Information, (https://www.ncei.noaa.gov/); The calculated results of bottom shear stress and sediment carrying capacity based on the near bottom observation (the mean value).
DOI: 10.17632/srkpysb727
title: FELINE: Finite element solver for hydrodynamic lubrication problems using the inexact Newton method

description: In this work we present FELINE, a C++ solver of the Reynolds equation for treating hydrodynamic lubrication problems. To correctly describe cavitation regions, FELINE implements the inexact Newton iteration (INE) algorithm within a finite element method (FEM) framework. The solver was tested and validated against known cases in literature and industrially relevant cases of dimpled textures. Furthermore, we provide a benchmark for a complex dimpled texture case to evaluate the performance and robustness of the implementation. FELINE performs very fast when compared with existing implementations and shows a great degree of stability, while providing physically correct solutions thanks to the INE algorithm.
DOI: 10.6084/m9.figshare.10008050.v1
title: Main chemical composition and physical properties

description: The main chemical composition and physical properties of various solid raw materials (coal gangue, fly ash, cement, corn stalk fly ash) are listed in this table.
DOI: 10.6084/m9.figshare.13951592.v1
title: Critically Commenting Publics as Authoritarian Input Institutions: How Citizens Comment Beneath their News in Azerbaijan, Russia, and Turkmenistan

description: Little is known presently about how, why, and with what consequences audiences comment on their news in contemporary authoritarian regimes. In order to address this gap, this study leverages recent theorizing about the multiple public sphere under non-democratic rule. Accordingly, critically commenting publics are theorized as “input institutions” that not only create risks but also offer important benefits for autocrats. Grounded in this approach, the study develops a series of hypotheses about the extent of political criticism that should be visible beneath the news in three purposefully selected authoritarian contexts: Azerbaijan, Russia, and Turkmenistan. In order to test these hypotheses, commenting environments facilitated (or not) by 46 leading news organizations on seven platforms were considered (N=322). For each environment, coders established whether comments were published that were (1) critical of the autocrat himself, (2) critical only of lower-level policies or officials of the regime, or (3) entirely uncritical. As the findings show, the extent of readers’ criticism differed systematically between the three contexts, broadly following the patterns hypothesized. Moreover, in line with this study’s key assumptions, critically commenting publics were facilitated not only by opposition media but also by substantial numbers of state-controlled news organizations.
DOI: 10.6084/m9.figshare.14326487.v1
title: Light interference pattern measurements from automated low-cost Young’s double-slit experiments

description: Young’s double-slit experiment is commonly used in undergraduate physics laboratory to show the wave nature of light. As an alternative to expensive commercial kits, here we present an automated, low–cost light intensity measurement setup that allows real-time visualization of the interference pattern. The light intensity is measured by a light dependent resistor placed on the head of a dot matrix printer. The head motion is controlled by an Arduino which also collects the data and send them to a computer. The interference pattern obtained by the setup is in agreement with a model that includes the degree of the coherence of the light source and the effective size related to the light collecting area of the resistor. The apparatus allows quantitative data analysis from the measured light patterns and is suitable to be used in undergraduate physics laboratories.
DOI: 10.6084/m9.figshare.24407896.v3
title: BLUP value of Arabidopsis secondary metabolites in different accession at 0d and 6d after darkness

description: In plants due to their sessile nature, secondary metabolites are important components against different abiotic and biotic stress, such as extended darkness. For this reason, the variation of secondary metabolite content of the <i>Arabidopsis thaliana </i>HapMap natural population following 0-and 6-d darkness treatment were detected and the raw data of different accessions at two timepoints were deposited in the MetaboLights database. Moreover, the annotated secondary metabolites of these samples are presented in this data descriptor, which we believe will be a usefully re-usable resource for future integrative analysis with dark-treated transcripts, proteins or other phenotypic data in order to comprehensively illustrate the multiomic landscape of Arabidopsis in response to the stresses exerted by extended darkness.
DOI: 10.6084/m9.figshare.3529925.v1
title: Appendix B. Selected species, their leaf life span, and CV of the ratio of number of new leaves to number of total leaves marked previously per unit time per species.

description: Selected species, their leaf life span, and CV of the ratio of number of new leaves to number of total leaves marked previously per unit time per species.
DOI: 10.17632/8vzg3v6mkv
title: Pancreatic Cancer Case Report - CT Scan Slices - with Contrast

description: Pancreatic Cancer Case Report - CT Scan Slices - with Contrast
DOI: 10.6084/m9.figshare.28147751.v1
title: ZINC 250k prepossessed dataset files.

description: Preprocessed and encoded versions of the ZINC250k dataset used for the paper.
DOI: 10.17632/2gsjm5kfvd
title: Insights about Artificial Intelligence (AI): A Research on today's Technological Economy

description: The research abstract about Artificial Intelligence (AI) with its adoption and impact on todays technological economy will benefit our readers in discovering its revolutionary technology with its transforming IT industries, driving modern system innovation and by reshaping the business landscape of an integrated system based economy in the community. In the succeeding part of the thesis paper, the author wants to highlight several key aspects about AI adoption, integration and its implementation towards our growing and fast-paced environment intended for strategic planning. This will cover its benefits, impact, and its criterion mechanism in building up AI adoption and implementation from various sectors in the community. It also aims that AI systems will potentially enhance its productivity, efficiency, accuracy, reliability, and IT acceptance to its valuable users in the society. This abstract about AI will also be dependent on its research data collection from the respondents way of answering the google form evaluation. Making this thesis completion of the author will inspire other thesis learners to showcase their research talents, and by significantly adopt interested AI support decision-makers and opportunities in order to address and manage potential and strategic implications about AI adoption and impact by knowing to its present contributions on todays modern based advanced systems development in the Philippines.
DOI: 10.17632/n8ms53g8zx
title: Data for: Molecular evidence for the retention of the Thaumatopsyllidae in the order Cyclopoida (Copepoda) and establishment of four suborders and two families within the Cyclopoida

description: The Supplementary information is the concatenated three gene fragments alignment analyzed in this study.
DOI: 10.6084/m9.figshare.20713345.v1
title: RawData_ProvenceCoast2019.zip

description: <strong>Abstract: </strong> Mesophotic marine ecosystems are characterized by lower light penetration supporting specialized fish fauna. Due to their depths (-30 to -150 m), accessibility is challenging, and the structure of mesophotic fish assemblages is generally less known than either shallow reefs or deep zones with soft bottoms which are generally trawled. Environmental DNA metabarcoding from seawater filtered <em>in situ</em> could improve our ability to monitor the diversity of mesophotic ecosystems. Here, we developed and tested a submersible standalone pumping device allowing targeted marine water filtering to explore the biodiversity of two mesophotic ecosystems, one temperate along the Provence coast in the North-Western Mediterranean Sea and one tropical at the seamount La Pérouse in the Western Indian Ocean. We filtered water samples from depths ranging between 0 and 200 m in the Mediterranean Sea and between 60 and 140 m in the Indian Ocean and applied a metabarcoding protocol using the teleo primer pair targeting the 12S mitochondrial rDNA (Actinopterygii and Chondrichthyes). For both study regions, our eDNA survey was able to recover highly diverse fish assemblages and the compositional analysis of eDNA samples showed both a marked signal of fish compositional turnover and overlapping taxa between depth zones. Further, we observed that a substantial number of species were found in samples collected in depths beyond their reported depth range suggesting an underestimation of species’ depth tolerances. eDNA metabarcoding should thus complement existing knowledge of species' geographic distributions across space and depth. Overall, our results demonstrate the potential of eDNA metabarcoding for future mesophotic surveys as it allows fast and broad biodiversity assessment. <br> <strong>Data set:</strong> These data sets include the raw data of the Provence coast of the Environmental DNA article "Environmental DNA highlights fish biodiversity in mesophotic ecosystems".
DOI: 10.6084/m9.figshare.28677266.v1
title: FEA report.docIntegrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink

description: database for artical uploaded :"Integrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink"
DOI: 10.6084/m9.figshare.28978697.v1
title: ZILLNB_Tutorial_update

description: Updated tutorials for ZILLNB.
DOI: 10.6084/m9.figshare.29095400.v1
title: Imagem de Satélite Sentinel-2 (com Correções e Realce) – Geoparque Caminhos dos Cânions do Sul – 01 de agosto de 2024

description: <b>Descrição Técnica:</b>Este produto raster corresponde a uma <b>imagem de satélite Sentinel-2, Nível 1C</b>, processada para a área abrangida pelo <b>Geoparque Mundial da UNESCO Caminhos dos Cânions do Sul</b>, localizada entre Santa Catarina e Rio Grande do Sul, Brasil.A imagem foi capturada em <b>01 de agosto de 2024</b> e submetida a <b>ajustes visuais para realce do contraste e da interpretação visual</b>, incluindo:Correção atmosférica parcial via composição RGB otimizadaRealce de sombras e morfologia do terreno.Correções de brilho, saturação e contraste para fins de visualização geoespacial e comunicação ambiental.<b>Características do Produto:</b><b>Sensor:</b> Sentinel-2 MSI (Multispectral Instrument)<b>Data da imagem:</b> 2024-08-01<b>Tipo:</b> Composição RGB (B4, B3, B2)<b>Nível de processamento:</b> L1C (Top of Atmosphere reflectance)<b>Resolução espacial:</b> 10 metros<b>Área coberta:</b> Geoparque Caminhos dos Cânions do Sul (~2.830 km²)<b>Sistema de Coordenadas:</b> UTM / SIRGAS 2000 / Zona 22S<b>Formato:</b> GeoTIFF (8 bits por banda)<b>Bandas utilizadas:</b>B4 (Red)B3 (Green)B2 (Blue)<b>Aplicações:</b>Visualização integrada com dados topográficos e altimétricosMateriais de divulgação científica e institucionalSuporte à educação ambiental e geoturismoMonitoramento de cobertura vegetal e paisagemIntegração com mapas interpretativos e webmaps (tiles raster)<b>Observações:</b>Este produto <b>não substitui imagens brutas de sensoriamento remoto</b> para análises quantitativas. Trata-se de uma versão <b>otimizada para visualização e comunicação geográfica</b>, com finalidade <b>educacional, cultural e científica</b>.
DOI: 10.6084/m9.figshare.3558810.v1
title: Data Paper. Data Paper

description: File List Leaf_herbivory.csv (MD5: 4ee09b5d292087d92450c96fea54863c) Description Herbivory is viewed as a major driver of plant evolution and the most important energy pathway from plants to higher trophic levels. Therefore, understanding patterns of herbivory on plants remains a key focus in evolution and ecology. The evolutionary impacts of leaf herbivory include altering plant fitness, local adaptation, the evolution of defenses, and the diversification of plants as well as natural enemies. Leaf herbivory also impacts ecological processes such as plant productivity, community composition, and ecosystem nutrient cycling. Understanding the impact of herbivory on these ecological and evolutionary processes requires species-specific, as opposed to community-level, measures of herbivory. In addition, species-specific data enables the use of modern comparative methods to account for phylogenetic nonindependence. Although hundreds of studies have measured natural rates of leaf consumption, we are unaware of any accessible compilation of these data. We created such a data set to provide the raw data needed to test general hypotheses relating to plant–herbivore interactions and to test the influence of biotic and abiotic factors on herbivory rates across large spatial scales. A large repository will make this endeavor more efficient and robust. In total, we compiled 2641 population level measures for either annual or daily rates of leaf herbivory across 1145 species of vascular plants collected from 189 studies. All damage measures represent natural occurrences of herbivory that span numerous angiosperm, gymnosperm, and fern species. To enable researchers to explore the causes of variation in herbivory and how these might interact, we added information about the study sites including: geolocation, climate classification, habitat descriptions (e.g., seashore, grassland, forest, agricultural fields), and plant trait information concerning growth form and duration (e.g., annual vs. perennial). We also included extensive details of the methodology used to measure leaf damage, including seasons and months of sampling, age of leaves, and the method used to estimate percentage area missing. We anticipate that these data will make it possible to test important hypotheses in the plant–herbivore literature, including the plant apparency hypothesis, the latitudinal-herbivory defense hypothesis, the resource availability hypothesis, and the macroevolutionary escalation of defense hypothesis. <i>Key words</i>: <i>browsing; climatic variation; defoliation; folivory; global census; grazing; latitudinal gradients; leaf age; leaf consumption; plant–herbivore interactions; primary consumption; trophic interactions.</i>