cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/37n65hx7rc.2
title: MEDITERATRI Project (HRZZ) - Trophic interactions of spiders in Mediterranean agriculture using DNA metabarcoding

description: We hypothesized that spiders, as abundant predatory arthropods in Mediterranean agriculture, can provide biocontrol services in olive groves and vineyards. For that, their diets and prey choices in agricultural sites, with integrated (IPM) and ecological pest management (EPM) within Zadar County, Croatia. Spider were sampled during spring and autumn in 2018 and 2019, by hand or using live pitfall traps. A total of 256 spiders were collected and included in eDNA of gut contents analysis. The DNA was extracted from the abdomen of each individual. Two pairs of primers were selected for dietary metabarcoding of spider guts: the primer pair BF3-BR2 that amplifies the 418 bp-long COI target region and the TelperionF-LaurelinR that amplifies the 301 bp COI region. Illumina library was prepared at Novogene Europe (Cambridge, UK) by including Illumina Nextera adapters. Next-generation sequencing was performed on an Illumina Novaseq high-throughput instrument, with an amplicon length of 250 bp in both directions with a sequencing depth of 35,000 reads per sample. Sequencing on Illumina generated 9,234,272 reads for sequencing with the BF3-BR2 primer pair and 3,519,228 reads for sequencing with the TelperionF-LaurelinR primer pair. In FastP all reads underwent quality checks and trimming. Sequences were denoised and grouped into operational taxonomic units (OTUs) using Unoise3 in Usearch11. A taxonomic identity was done using data from GenBank after being proceeded with BLASTn v2.7.1 and a 97% identity threshold.
Results showed strong dietary differences in spider guilds (; ground hunters, ambush hunters, other hunters and web weavers). Thee prey detected in their gut that made up 77% of the overall diet of spiders belong to insect orders: Diptera, Lepidoptera, Hemiptera, and Hymenoptera (mainly ants). We demonstrate that management type, as well as guild type, significantly influenced predation on phytophagous insects. More individuals consumed phytophagous insects in sites with an ecological type of management suggesting a higher biocontrol potential in sites with EPM. On the other hand, the overall predation on phytophagous insects remained consistent across seasons, suggesting a combined constant rate of predation in both management types. This is the first study using a DNA metabarcoding approach in Croatia for analysing spiders' trophic interactions.
DOI: 10.17632/nnx6brc9hj.2
title: Raw measurement data on the influence of pH and H2 partial pressure on syngas fermentation with Clostridium ljungdahlii

description: Measurement data on off-gas measurement (micro gas chromatograph), cell density (photometer) and product concentrations (HPLC) to determine the influence of pH and H2 partial pressure on syngas fermentation with biomass retention and Clostridium ljungdahlii. For each experimental interval, a calibration measurement was performed on the micro gas chromatograph (indicated by an "R" appended to the file name). The correlation of the timestamp to the process time can be taken from the LiquidSamples.xlsx file.

The unit of measurement data of the gas chromatograph is volume percent. Assuming that nitrogen is not consumed by the bacteria, the exhaust gas volume flow and subsequently the individual gas uptake rates can be determined with the aid of the measured exhaust gas composition, see Eqs. 1-3 in Oswald F, Dörsam S, Veith N, Zwick M,Neumann A, Ochsenreither K and Syldatk C(2016), Sequential Mixed Cultures: From Syngas to Malic Acid. Front. Microbiol.7:891. doi: 10.3389/fmicb.2016.00891.
DOI: 10.17632/d7w8p438kw.1
title: Image segmentation and flow prediction of digital rock with U-net network

description: The data for the paper Image segmentation and flow prediction of digital rock with U-net network
DOI: 10.17632/vrst8rv245.1
title: CMAME_XDG_JumpsConditions_Henneaux

description: This folder contains the reference solutions used for the convergence study on the three test cases presented in the paper "High-order enforcement of jumps conditions between compressible viscous phases: an extended interior penalty discontinuous Galerkin method for sharp interface simulation", Henneaux et al. (2023).
DOI: 10.17632/ps6xk7mgpr.2
title: Hydrothermal experiments at 500 to 700 °C and 1.7 kbar: Insights into NdPO4 solubility and aqueous Nd speciation in supercritical fluids

description: The attached files contain all of the underlying data for figures and tables within the work "Hydrothermal experiments at 500 to 700 °C and 1.7 kbar: Insights into NdPO4 solubility and aqueous Nd speciation in supercritical fluids by Banerjee et al.
DOI: 10.17632/ftcxjvn9g6.1
title: Comparison of the gut microbiome of Apis melifera ruttneri (lineage A) vs Apis melifera ligustica and carina (lineage C)

description: Apis mellifera evolved mainly in African, Asian and European continents over thousands of years, leading to the selection of a considerable number of honey bees subspecies that have adapted to various environments such as hot semi-desert zones and cold temperate zones. With the evolution of honey bee in subspecies, it is possible that environmental conditions, food sources and microbial communities typical of the colonized areas have shaped the honey bee gut microbiota. In this study the microbiota of two distinct lineages (mitochondrial haplotypes) of bees Apis mellifera ruttneri (lineage A) and Apis mellifera ligustica and carnica (both lineage C) were compared. Honey bee guts were collected in periods of drought in the respective breeding areas (Malta island and Italian Emilia-Romagna and South Tyrol regions). Microbial DNA from the bee gut was extracted and amplified for the V3-V4 regions of the 16S rRNA gene for bacteria and for ITS2 for fungi.
DOI: 10.17632/svcr7j8p4y.1
title: LDHU3_02.0870

description: Peptidase M3A/M3B family member; Leishmania donovani (HU3 strain)
DOI: 10.17632/8d8wt3mgty.1
title: LMJFC_260021700

description: Protein of unknown function - conserved; Leishmania major (Friedlin)
DOI: 10.17632/c3jk6nwr56.1
title: Anonymised PerioMind Colombia cohort database

description: Colombian men and women aged 65 years and older. Information on educational level, cognitive function, number of teeth, diagnosis and periodontal parameters.
DOI: 10.17632/2rd628xtbx.1
title: Reliability and Maintenance Data Set for Resilience Optimization

description: This is a dataset with component reliability data, maintenance data, repaircrew data, routing distances for the following paper submitted to RESS for potential publication.
Ryan O’Neil, Claver Diallo, Abdelhakim Khatab, Nidhal Rezg (2024). Enhancing Critical Network Infrastructure Resilience Through Optimal Post-Disruption Maintenance and Routing Decisions, submitted to Reliability Engineering and System Safety, Elsevier.

This data is for experiment 4 in the paper. This set of experiments considers the network displayed in Figure 18, which includes a known source node s, sink node t, and multiple transshipment nodes. The arc index and capacity (in cubic meters per day, CMD) are indicated on each network arc. The network comprises a total of 31 components/arcs. When all components are functioning, the maximum achievable network flow is 112 CMD. With a demand set at d = 112 CMD, there are S = 43 d-MCs.
DOI: 10.17632/f43c7snks5.1
title: BRACETS: Bimodal Repository of Auscultation Coupled with Electrical Impedance Thoracic Signals

description: Background and Objective: Respiratory diseases are among the most significant causes of morbidity and mortality worldwide, causing substantial strain on society and health systems. Over the last few decades, there has been increasing interest in the automatic analysis of respiratory sounds and electrical impedance tomography (EIT). Nevertheless, no publicly available databases with both respiratory sound and EIT data are available.

Methods: In this work, we have assembled the first open-access bimodal database focusing on the differential diagnosis of respiratory diseases (BRACETS: Bimodal Repository of Auscultation Coupled with Electrical Impedance Thoracic Signals). It includes simultaneous recordings of single and multi-channel respiratory sounds and EIT. Furthermore, we have proposed several machine learning-based baseline systems for automatically classifying respiratory diseases in six distinct evaluation tasks using respiratory sound and EIT (A1, A2, A3, B1, B2, B3). These tasks included classifying respiratory diseases at sample and subject levels. The performance of the classification models was evaluated using a 5-fold cross-validation scheme (with subject isolation between folds). 

Results: The resulting database consists of 1097 respiratory sounds and 795 EIT recordings acquired from 78 adult subjects in two countries (Portugal and Greece). In the task of automatically classifying respiratory diseases, the baseline classification models have achieved the following average balanced accuracy: Task A1 - 77.9±13.1%; Task A2 - 51.6±9.7%; Task A3 - 38.6±13.1%; Task B1 - 90.0±22.4%; Task B2 - 61.4±11.8%; Task B3 - 50.8±10.6%. 

Conclusion: The creation of this database and its public release will aid the research community in developing automated methodologies to assess and monitor respiratory function, and it might serve as a benchmark in the field of digital medicine for managing respiratory diseases. Moreover, it could pave the way for creating multi-modal robust approaches for that same purpose.
DOI: 10.17632/rkp6r6h49k.1
title: Análisis de pertinencia programa de medicina UCC Medellín 2022

description: Contiene la tabla de datos depurada de la encuesta para evaluación de la pertinencia del programa de medicina de la Universidad Cooperativa de Colombia, ejecutada en el año 2022 en función de la acreditación internacional del programa; además, incluye el código utilizado en R y RStudio para el análisis del grupo de datos
DOI: 10.17632/cnb94ggsf8.1
title: Data associated with Improved Production of Lanthipeptides in E. coli; Chemical Science, 2023, DOI: 10.1039/D2SC06597E

description: Data associated with "Improved Production of Lanthipeptides in Escherichia coli" Chem. Sci. 2023 DOI: 10.1039/D2SC06597E
DOI: 10.17632/f4py97mdy4.1
title: [Dataset and R scripts] Shaping pollinator diversity through coffee agroforestry management: A meta-analytical approach

description: Dataset and R scripts supporting the statistical analyses of the Review Article "Shaping pollinator diversity through coffee agroforestry management: A meta-analytical approach" by Diego Centeno-Alvarado, Ariadna Valentina Lopes and Xavier Arnan in Insect Conservation and Diversity (https://doi.org/10.1111/icad.12755).
DOI: 10.17632/b38ggxb7zz.1
title: Sterol O-acyltransferase (SOAT/ACAT) activity is required to form cholesterol crystals in hepatocyte lipid droplets

description: Objective: Excess cholesterol storage can induce the formation of cholesterol crystals in hepatocyte lipid droplets. Such crystals distinguish metabolic dysfunction associated steatohepatitis (MASH) from simple steatosis and may underlie its pathogenesis by causing cell damage that triggers liver inflammation. The mechanism linking cholesterol excess to its crystallization in lipid droplets is unclear. As cholesteryl esters localize to and accumulate in lipid droplets more readily than unesterified free cholesterol, we investigated whether cholesterol esterification by sterol O-acyltransferase (SOAT), also known as acyl co-A cholesterol acyltransferase (ACAT), is required for hepatocyte lipid droplet crystal formation.

Method: Cholesterol crystals were measured in cholesterol loaded Hep3B hepatocytes, RAW264.7 macrophages, and mouse liver using polarizing light microscopy. We examined the effect of blocking SOAT activity on crystal formation and compared these results to features of cholesterol metabolism and the progression to intracellular crystal deposits.

Results: Cholesterol loading of Hep3B cells caused robust levels of lipid droplet localized crystal formation in a dose- and time-dependent manner. Co-treatment with SOAT inhibitors and genetic ablation of SOAT1 blocked crystal formation. SOAT inhibitor also blocked crystal formation in low density lipoprotein (LDL) treated Hep3B cells, acetylated LDL treated RAW 264.7 macrophages, and in the liver of mice genetically predisposed to hepatic cholesterol overload and in mice with cholesterol enriched diet-induced MASH.

Conclusion: SOAT1-mediated esterification may underlie cholesterol crystals associated with MASH by concentrating it in lipid droplets. These findings imply that inhibiting hepatocyte SOAT1 may be able to alleviate cholesterol associated MASH. Moreover, that either a lipid droplet localized cholesteryl ester hydrolase is required for cholesterol crystal formation, or the crystals are composed of cholesteryl ester.
DOI: 10.5281/zenodo.14678831
title: Brand loyalty and eWOM: Restaurants experiences
DOI: 10.5281/zenodo.14678832
title: Brand loyalty and eWOM: Restaurants experiences
DOI: 10.17632/wgrxb645k7.1
title: LDHU3_12.0090

description: Ribonuclease mar1; Leishmania donovani (HU3 strain)
DOI: 10.17632/3kw9shtj9d.1
title: LDHU3_12.0190

description: Protein kinase; Leishmania donovani (HU3 strain)
DOI: 10.17632/w6y53574zp.1
title: LIP_FEF

description: Single-unit data of the paper : Perisaccadic and Attentional Remapping of Receptive Fields in Lateral Intraparietal Area and Frontal Eye Fields.
DOI: 10.17632/bwm3s394sk.1
title: Promoting healthy aging through exergames among older adults dataset

description: This data set corresponds to the paper entitled "Promoting healthy aging through exergames among older adults: single-player vs. multi-player modes". Participants were divided into three groups (single group, same-sex partner group, and couple group) according to their intimate relationships. The dataset includes participants' demographic information (age, gender, education, exergame experience, and digital proficiency), mean heart rate during the exergame, game scores, sociability before and after playing the exergames, flow experience, and game experience.
DOI: 10.17632/87kch6smbv.1
title: LINF_360045400

description: Nucleoside triphosphate pyrophosphohydrolase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8xv3x884d8.1
title: LDHU3_12.0170

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/ps74kp5m62.1
title: LDHU3_12.0150

description: Plus-3 domain/Zinc finger - C3HC4 type (RING finger) containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/w3jvm52p7t.1
title: LINF_360043800

description: NADH-ubiquinone oxidoreductase complex I subunit | NDUFB10 ortholog; Leishmania infantum (strain JPCM5)
DOI: 10.17632/d6g53zzdj8.1
title: LINF_360044400

description: Protein of unknown function (DUF2009); Leishmania infantum (strain JPCM5)
DOI: 10.17632/924nr22b4p.1
title: Put a bet on it: Can Self-funded Commitment Contracts Curb Fitness Procrastination?

description: These Stata do files were used to clean and format the data and run the analyses included in the paper "Put a Bet on It: Can Self-Funded Commitment Contracts Curb Fitness Procrastination?" by Devon Spika, Linnea Wickström Östervall, Ulf Gerdtham, Erik Wengström. 
We also include the baseline and follow-up questionnaires in Swedish and English. 

Abstract: 
We investigate the use of a highly scalable intervention to help individuals achieve their physical activity goals: self-funded commitment contracts. Using a randomised experiment, we compare the effect of soft (non-incentivised) and hard (incentivised) contracts among 1629 members of a gym in Stockholm, Sweden. We find a significant positive impact of being offered a hard contract on monthly visits to the gym and the probability of meeting one's contract goal. Relative to the control group, being offered a hard contract significantly increases gym visits by 21%, while being offered a soft contract leads to an 8% increase.

** Note: No data are included as we cannot share the experiment data publicly. **
DOI: 10.17632/tvbt76bnbf.2
title: A Study of Chaguza et al "Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection"

description: Supplementary Dataset for the manuscript "Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection"
DOI: 10.17632/gxgp9pn5zb.1
title: Novel insights into investor trust in public firms: measure development, determinant analysis, and firm-level consequences

description: 1. A readme file which describes the Python and Stata softwares we use to perform the data analysis and the data description. (filename: read me)
2. Two files which contain the Python codes. (filename: EM thesis python code)
3. One do file which contains the Stata code. (filename: EM thesis code)
4. An excel file which contains the data for generating our empirical results. (all interested variables and beta with control result v2)
DOI: 10.17632/rfphzt3wjm.1
title: Glutamine Transport via Neurotransmitter Transporter 4 (NTT4, SLC6A17) Maintains Presynaptic Glutamate Supply at Excitatory Synapses in the Central Nervous System

description: The glutamate-glutamine cycle is thought to be the principle metabolic pathway that recycles glutamate at excitatory synapses. In this cycle, synaptically released glutamate is sequestered by astrocytes and converted to glutamine before being returned to the presynaptic terminal for conversion back into glutamate to replenish the neurotransmitter pool. While many aspects of this cycle have been extensively studied, a key component remains unknown: the nature of the transporter responsible for the presynaptic uptake of glutamine. We hypothesise that neurotransmitter transporter 4 (NTT4/SLC6A17) plays this role. Accordingly, we generated NTT4 knockout mice to assess its contribution to presynaptic glutamine transport and synaptic glutamate supply. Using biochemical tracing of [1-13C] glucose and [1,2-13C] acetate in awake mice, we observe a reduction of neuronal glutamate supply when NTT4 is absent. In addition, direct electrical recording of hippocampal mossy fibre boutons reveals a presynaptic glutamine transport current that is entirely inhibited by genetic or pharmacological elimination of NTT4. The role of NTT4 in neurotransmission was demonstrated by electrophysiological recordings in acute hippocampal slices, which reveal that NTT4 is required to maintain vesicular glutamate content and to sustain adequate levels of glutamate supply during periods of high-frequency neuronal activity. Finally, behavioural studies in mice demonstrate a deficit in trace fear conditioning; a hippocampus-dependent memory paradigm, and abnormalities in nest building, anxiety behaviour, and social preference. These results demonstrate that NTT4 is a presynaptic glutamine transporter which is a central component of the glutamate-glutamine cycle. NTT4 and hence the glutamate-glutamine cycle maintain neuronal glutamate supply for excitatory neurotransmission during high-frequency synaptic activity, and are key regulators of memory retention and normal behaviour.
DOI: 10.17632/8j9kfwvvmh.1
title: Electronic transport properties of hcp and B2 phase Fe-Si alloys at high pressure-temperature conditions and thermal heterogeneity at Earth’s core-mantle boundary

description: This file contains all the theoretical calculation results for Fe-Si alloys, including electrical resistivity, thermal conductivity, and Lorentz numbers. The lattice parameters used in our calculation are from the literature and listed in this file.
DOI: 10.17632/vv2zczcvvm.1
title: Towards enhanced sensitivity of the 15N Gas Flux Method for quantifying denitrification in soil

description: Data for article "Towards enhanced sensitivity of the 15N Gas Flux Method for quantifying denitrification in soil"
DOI: 10.17632/5kb35xfvjw.1
title: LINF_360047500

description: HAP2-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cr5p3tt6vf.1
title: LINF_360047800

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pbgrmwf7k7.1
title: The semi-analytic method for buoyancy-induced thermal stratification in hot water tanks during standby periods

description: This dataset contains the original Computational Fluid Dynamics simulation results of hot water tanks subject to standby heat loss. The tank volumes and aspect ratios (height to diameter) are changed in line with common types. 
Experiment dataset has the experiment measurements of a 150-l hot water cylinder under standby heat loss. The test was done and reported by Jianhua Fan and Simon Furbo, the data was curated from their published paper (doi:10.1016/j.solener.2012.07.024). Graph digitaliser software "GetData" was used to obtain the experiment data.
DOI: 10.17632/c6x4cmv59k.1
title: LDHU3_18.1590

description: ttaggg binding factor | TRF; Leishmania donovani (HU3 strain)
DOI: 10.17632/p2ycb5z6bj.1
title: Identification of fruit fly (Tephritidae) pupae parasitized by Hymenoptera parasitoids

description: Parasitoid wasps are the most diverse group of parasitoids used in biological control programs. They can develop inside host species during their larval stage, resulting in the death of their hosts. So, identification of the host species of Hymenoptera parasitoids is challenging, because only the puparium remains after the parasitoid hatches. Therefore, the aim of this work was, developed to determine the host species of Hymenoptera parasitoids, through the puparium. by amplification and sequencing of cytochrome C oxidase subunit I (COI) of mitochondrial DNA. The results of the present study show that COI DNA sequencing was able to reliably identify host pupae to the genus level, allowing the identification of the Anastrepha genus in this study
DOI: 10.5281/zenodo.14699561
title: salvia_officinalis_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14699562
title: salvia_officinalis_decontaminated_FSCR.fasta.gz
DOI: 10.17632/28jy32m4sy.1
title: Effect of whey protein isolate addition on set-type camel milk yogurt: Rheological properties and biological activities of the bioaccessible fraction

description: Supplementary materials of published article "Effect of whey protein isolate addition on set-type camel milk yogurt: Rheological properties and biological activities of the bioaccessible fraction" in Journal of Dairy Science
DOI: 10.17632/586d43rpyx.1
title: RCM Data

description: Research data used in the work “How to Use Continuous Variables in Geodiversity Assessments – Raster Continuous Morphodiversity Model” by Tomasz Bartuś, Wojciech Masteja (bartus@agh.edu.pl, wmastej@agh.edu.pl).
DOI: 10.17632/cgtz8fzmtj.1
title: LDHU3_18.1540

description: Prolyl-tRNA synthetase | ProRS; Leishmania donovani (HU3 strain)
DOI: 10.17632/yz8fzxf2dj.1
title: LINF_330038500

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/5g47ypkknv.1
title: LDHU3_18.1600

description: Mitochondrial carrier protein | MCP12; Leishmania donovani (HU3 strain)
DOI: 10.17632/4wx6t4pbvg.1
title: LINF_330041700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)