cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f357r/1
title: Processed behavioral and neurophysiological data 1

description: The data file is a zip file, which is split into 19 files using 'split' command in Mac. The zip file is titled 'ProcessedData.zip'. The zip file contains seven folders and  the folders contain processed data used to compute main results and to create all figures in the manuscript. 
1) Behavioral confusion matrix
2) ITPC and induced power
3) Phase and power data for classification and mutual information analysis
4) Selected channels for each subject 
5) Shuffled ITPC
6) Sound materials
7) Temporal averaged data
Each folder (except Sound materials) contains data files of 15 subjects. The subject is indicated by ‘sub#’ in the filename. 

In each folder, there is a ‘readme’ text file that illustrates data information.

All the datasets are of matlab format and could be processed in MATLAB. 

Some datasets are formatted in fieldtrip data structure and the information about the data structure can be found here: www.fieldtriptoolbox.org
 
Further information on data processing can be found in the Method section of the manuscript. 

The raw data files and the denoised data files can be required by contacting 
Xiangbin Teng, xiangbin.teng@gmail.com.
DOI: 10.5061/dryad.f357r/2
title: Processed behavioral and neurophysiological data 2
DOI: 10.5061/dryad.f357r/3
title: Processed behavioral and neurophysiological data 3
DOI: 10.5061/dryad.f357r/4
title: Processed behavioral and neurophysiological data 4
DOI: 10.5061/dryad.f357r/5
title: Processed behavioral and neurophysiological data 5
DOI: 10.5061/dryad.f357r/6
title: Processed behavioral and neurophysiological data 6
DOI: 10.5061/dryad.f357r/7
title: Processed behavioral and neurophysiological data 7
DOI: 10.5061/dryad.h0r6q/1
title: Genotypic data

description: Microsatellite loci data; GPS coordinates of sampling sites in the Kottenforst, complete genotypes of 2563 larvae; larvae reference groups
DOI: 10.5061/dryad.h0r6q/2
title: MARK Files

description: MARK files used for estimation of movement probability
DOI: 10.5061/dryad.h0r6q/3
title: Dispersal and homerange data

description: Data of the mark-recapture study and home range data based on radio tracking
DOI: 10.5061/dryad.k46r2/30
title: TCB_Scen6.5b_map

description: Landscape map portraying restoration Scenario 6.5
DOI: 10.5061/dryad.k46r2/34
title: TCB_Scen7.4b_map

description: Landscape map portraying restoration Scenario 7.4
DOI: 10.5061/dryad.k46r2/35
title: TCB_Scen7.5b_map

description: Landscape map portraying restoration Scenario 7.5
DOI: 10.5061/dryad.n848j/1
title: Data_Dryad_Prietoetal_2017
DOI: 10.5061/dryad.nr780/1
title: README

description: Guide to all of the files contained within this directory.
DOI: 10.5061/dryad.nr780/2
title: rename_detail_files

description: A Python script that renames Avida detail output files for easier use in Analyze Mode.
DOI: 10.5061/dryad.nr780/3
title: dr_model

description: A Mathematica notebook that solves the drift robustness mathematical model.
DOI: 10.5061/dryad.nr780/4
title: config_files

description: A folder containing all of the Avida configuration files.
DOI: 10.5061/dryad.nr780/5
title: create_csv_files

description: A folder containing all of the Python scripts to create csv files from Avida output.
DOI: 10.5061/dryad.nr780/6
title: csv_files

description: A folder containing all of the csv files used to create the figures and perform statistical analyses.
DOI: 10.5061/dryad.pr284/1
title: data_PerezMendez_Neochamaelea_populations_JEcol

description: Genetic distances among populations of N. pulverulenta in Gran Canaria, Tenerife and La Gomera (Euclidean genetic distances, GD; conditional genetic distance, cGD), and isolation by resistances values for: topographic complexity, potential and current vegetation,   climate, non-resistance, and range shape of N. pulverulenta
DOI: 10.5061/dryad.q1f65.1
title: Data from: Declines in low-elevation subalpine tree populations outpace growth in high-elevation populations with warming
DOI: 10.5061/dryad.q1f65.1/1.1
title: Models and results for "Declines in low-elevation subalpine tree populations outpace growth in high-elevation populations with warming"

description: The models and results shown in the manuscript figures 3 and 4 are archived as text files for use with RAMAS GIS (Version 5).
DOI: 10.5061/dryad.q1f65.2/1.2
title: Models and results for "Declines in low-elevation subalpine tree populations outpace growth in high-elevation populations with warming"

description: The models and results shown in the manuscript figures 3 and 4 are archived as text files for use with RAMAS GIS (Version 5).
DOI: 10.5061/dryad.r701q/1
title: Supporting datasets_Hoffman et al. 2017

description: Metadata and datasets from plot and transects used in statistical analyses presented in Hoffman et al. 2017.
DOI: 10.5061/dryad.s07g6/1
title: WeChat Data CFA

description: Problematic Use of WeChat, Social Interaction and Locus of Control among College Students in China: Confirmatory Factor Analysis of WeChat Problematic Use Scale and Relationship to Locus of Control and Social Interaction
DOI: 10.5061/dryad.s07g6/2
title: WeChat Data EFA

description: Problematic Use of WeChat, Social Interaction and Locus of Control among College Students in China: Exploratory Factor Analysis of the WeChat Problematic Use Scale
DOI: 10.5061/dryad.s7jb3/1
title: BangaloreFlowerData

description: Abiotic and biotic measurements of Hot and Cold flowers in Bangalore, India.
DOI: 10.5061/dryad.s7jb3/2
title: SikkimFlowerData

description: Abiotic and biotic measurements of Hot and Cold flowers in Sikkim, India.
DOI: 10.5061/dryad.s7jb3/3
title: UppsalaFlowerData

description: Abiotic and biotic measurements from Hot and Cold flowers in Uppsala, Sweden.
DOI: 10.5061/dryad.s7jb3/4
title: FlowerLuresMeasurements

description: Abiotic and biotic measurements of the flower lures in the field.
DOI: 10.5061/dryad.s7jb3/6
title: FlowerLureVisits

description: Hoverfly visits to the flower lures in the field.
DOI: 10.5061/dryad.sn058/1
title: Inventory and morphometry of Cajas Massif lakes (Andes, Ecuador)

description: Lake inventory and area of the lakes in the Cajas Massif and volume, depth, and watershed area of a selection of lakes in the Cajas National Park based on a bathymetric survey.
DOI: 10.5061/dryad.0500c/1
title: CYC1 Alignment

description: Alignment of BLAST results from all genome skimming datasets for CYC1-like genes. Each line represents the accumulative BLAST results from a single species.
DOI: 10.5061/dryad.0500c/2
title: CYC2 Alignment

description: Alignment of BLAST results from all genome skimming datasets for CYC2-like genes. Each line represents the accumulative BLAST results from a single species.
DOI: 10.5061/dryad.0500c/3
title: CYC3A Alignment

description: Alignment of BLAST results from all genome skimming datasets for CYC3A-like genes. Each line represents the accumulative BLAST results from a single species.
DOI: 10.5061/dryad.0500c/4
title: CYC3B Alignment

description: Alignment of BLAST results from all genome skimming datasets for CYC3B-like genes. Each line represents the accumulative BLAST results from a single species.
DOI: 10.5061/dryad.14q31/1
title: Cultural evolution simulation code

description: This code implements the simulation of cultural evolution for the paper “Inferring individual-level processes in cultural evolution from population-level patterns".
DOI: 10.5061/dryad.1qv5t/1
title: CAD files

description: dxf file format
DOI: 10.5061/dryad.2j27b/29
title: Grp4_i05_Mar2016.fastq
DOI: 10.5061/dryad.2j27b/30
title: ZBCi12-V1T-1_S50_L006_R1_001.fastq
DOI: 10.5061/dryad.2j27b/31
title: params_ex

description: Example of a params file used in pyramid for this study.
DOI: 10.5061/dryad.2j27b/32
title: Haplo_July2016_77Samples_p60.unlinked_snps

description: pyRAD output: unlinked snps
DOI: 10.5061/dryad.2j27b/33
title: Haplo_July2016_77Samples_p60.snps

description: pyRAD output: SNPs
DOI: 10.5061/dryad.2j27b/34
title: Haplo_July2016_77Samples_p60.alleles

description: pyRAD output: alleles
DOI: 10.5061/dryad.2j27b/35
title: Haplo_July2016_77Samples_p60.loci

description: pyRAD output: loci
DOI: 10.5061/dryad.2p5rb/1
title: BinaryAgreementModel
DOI: 10.5061/dryad.35q4h/16
title: SVDquartets output for the ultraconserved elements data set with Liolaemus tenuis tenuis.

description: SVDquartets output (phylogenetic tree) for the ultraconserved elements (UCEs) data set with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/18
title: IQTREE Partitions for the protein-coding data set with Liolaemus tenuis tenuis

description: IQTREE Partitions (input) in nexus format for the protein-coding data set with Liolaemus tenuis tenuis
DOI: 10.5061/dryad.35q4h/19
title: IQTREE Partitions for the ultraconserved elements data set with Liolaemus tenuis tenuis

description: IQTREE Partitions (input) in nexus format for the ultraconserved elements (UCEs) data set with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/20
title: IQTREE Partitions for the full data set without Liolaemus tenuis tenuis

description: IQTREE Partitions (input) in nexus format for the full data set excluding Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/21
title: IQTREE Sequences, protein-coding data set, with Liolaemus tenuis tenuis.

description: IQTREE Sequences (input) in nexus format, protein-coding data set, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/22
title: IQTREE Sequences, ultraconserved elements data set, with Liolaemus tenuis tenuis.

description: IQTREE Sequences (input) in nexus format, ultraconserved elements (UCEs) data set, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/23
title: IQTREE Sequences, full data set, without Liolaemus tenuis tenuis.

description: IQTREE Sequences (input) in nexus format, full data set, excluding Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/25
title: IQTREE Results, protein-coding dataset, with Liolaemus tenuis tenuis.

description: IQTREE Results (phylogenetic tree), protein-coding dataset, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.3c457/4
title: Model selection

description: R script with model selection based on the three data files.
DOI: 10.5061/dryad.3v8s5/1
title: Mangan_et_al_ProcRoyalB_2017_RawData

description: This file contains all raw data used to produce the figures and tables within the article. Supplementary data is within a separate file.
DOI: 10.5061/dryad.3v8s5/2
title: Mangan_et_al_Supplementary_ProcRoyalB_2017_RawData

description: This file contains all the data used to produce the supplementary material for this article.
DOI: 10.5061/dryad.4288j/1
title: Supplemental Dataset 9

description: Supplemental Data. Walker et al. (2017). Plant Cell 10.1105/tpc.16.00961.Supplemental Dataset 9. Gene model analysis. 1547 differentially expressed transcripts that measure the expression of 711 genes, with each gene represented between 2-6 times. Cluster numbers, the transcript count per gene and a summary of whether expression of transcripts are “identical”, ”similar” or “different” based on the location, response and timing of differential expression for each gene are given (see text for explanation of analysis).
DOI: 10.5061/dryad.59b85/1
title: Bryophyte abundance, diversity and composition after retention harvest in boreal mixedwood forest

description: Data were acquired through long-term field observations as part of the Ecosystem Management Emulating Natural Disturbance (EMEND) project (http://emendproject.org). Data are provided in the sheets designated as “Compt-CoverType,” “Compt-Treatments” and “Bry-data,” and column headings are defined in the “Description” sheet of the excel workbook.
DOI: 10.5061/dryad.5j329/1
title: Mesocosm experiment

description: These data were collected during the mesocosm experiment described in "Keystone nonconsumptive effects within a diverse predator community" by Meadows et al. 2017. A description of each column follows: 1- Source: treatment groups; 2- Exposure: C=caged mosquito larvae, NC= exposed mosquito larvae; 3- Sex: sex could only be determined for (most) adult mosquitoes; 4-Tp: days to pupation i.e. larval development period; 5- Longevity: adult mosquito longevity (eclosion-death, in days); 6- Density: total number of predators in mesocosm; 7- Aquarius: number of Aquarius in mesocosm; 8- Beetle: number of Agabus + Tropisternus beetles in mesocosm; 9- Notonecta: number of Notonecta in mesocosm; 10- Aeshna: was Aeshna present in the community? Yes or No for predator treatments, Control if no predator (or Aeshna, by extension); 11-H: Shannon's H calculation for predator community evenness (99 entered for control to easily subset predator only treatments); 12- Cslong: sex-standardized adult longevity (see Meadows et al. Supp Info for calculation); 13- Winglength: adult winglength (in mm)
DOI: 10.5061/dryad.5j329/2
title: behavior experiment

description: These data were collected from the behavior experiment described in Meadows et al. 2017. Column descriptions are as follows: 1- Treatment: indicates predator community composition; 2- ID: separates replicates of treatments; 3- Obs: observation period/replicate; 4- Larvae: the number of larvae remaining at each observation period; 5- Diving: the proportion of larvae observed diving at least once during the observation period; 6- Aeshna: was Aeshna present in the community (Y=  yes, N= no, C= control (no predators present); 7- ActiveP: 1 if a mesopredator was active during the observation period, 0 otherwise.
DOI: 10.5061/dryad.743p5/10
title: lowENSMgoLIST.txt

description: PANTHER GO List Results for relatively high WET expression gene list
DOI: 10.5061/dryad.743p5/11
title: salmon files

description: Salmon folder including salmon quant outputs for 22 individuals (salmon)
DOI: 10.5061/dryad.743p5/12
title: testesDGE-master 2

description: Markdown files for analyses from GitHub site: https://github.com/macmanes-lab/testesDGE
DOI: 10.5061/dryad.743p5/4
title: good.BINPACKER.cdhit.fasta.dammit.gff3

description: Dammit gff3 file of annotation Dammit gff3 file of annotation
DOI: 10.5061/dryad.743p5/5
title: good.BINPACKER.cdhit.fasta.dammit.fasta

description: Annotated transcriptome
DOI: 10.5061/dryad.743p5/6
title: good.BINPACKER.cdhit.fasta

description: Optimized final un-annotated transcriptome
DOI: 10.5061/dryad.743p5/7
title: highENSM.csv

description: Accession ID file for PANTHER: relatively high DRY expression gene list
DOI: 10.5061/dryad.743p5/8
title: highENSMgoLIST.txt

description: PANTHER GO List results for relatively high DRY expression gene list
DOI: 10.5061/dryad.743p5/9
title: lowENSM.csv

description: Accession ID file for PANTHER: relatively high WET expression gene list
DOI: 10.5061/dryad.7ck38/1
title: PykF fitness effects: ancestor and 20K

description: Colony counts of competitions measuring the effect of pykF mutations in the ancestral strain (REL606) and in the 20,000 generation evolved strains each mutation was found in.
DOI: 10.5061/dryad.7ck38/2
title: PykF fitness analysis: ancestor and 20K

description: R script to analyze and plot pykF fitness effects in ancestor and 20,000 generation evolved strains
DOI: 10.5061/dryad.7ck38/3
title: PykF allele transfer fitness effects

description: Results of fitness competitions measuring the effect of pykF alleles transferred across different 20,000 generation evolved strains.
DOI: 10.5061/dryad.7ck38/4
title: pykF allele transfer analysis

description: R script to analyze and plot fitness of pykF mutations across different 20,000 generation evolved strains
DOI: 10.5061/dryad.7ck38/5
title: PykF time-series fitness effects

description: Results of competitions to measure the effect of six of the evolved pykF mutations at up to six time points along their evolutionary trajectory
DOI: 10.5061/dryad.7ck38/6
title: PykF time-series analysis

description: R script analyzing and plotting effect of pykF mutations at steps along evolutionary trajectories
DOI: 10.5061/dryad.8v04m/2
title: EuMIXFOR Scots pine - European beech data.

description: This data set provides unique empirical data from triplets of Scots pine (Pinus sylvestris L.) and European beech (Fagus sylvatica L.) across Europe. Dendrometric variables are provided for 32 triplets, 96 plots, 7555 trees and 4695 core samples. These data contribute to our understanding of mixed stand dynamics.
DOI: 10.5061/dryad.d5m8f/2
title: Composition and richness of the ground vegetation

description: Data presented is based on point-intercept data from field surveys of the ground vegetation. Compositional data is presented for the 10 most abundant species of the ground vegetation. Richness data, diversity indices and their corresponding evenness measures are based on all species. Besides data related to the species the file contain information on site id, latitude of the experimental sites, treatment, time (years) since last thinning operation and latitude (degrees) north of the southernmost site. Treatments were: Thinning (Th), No thinning (NoTh), Nitrogen fertilization (N), Thinning+ nitrogen fertilization (Th+N), and Thinning+N and P fertilization (Th+N+P).
DOI: 10.5061/dryad.d5m8f/3
title: Standing biomass of trees and ground vegetation

description: Data presented is standing biomass (above- and belowground) of trees (Scots Pine, Pinus sylvestris) and the ground vegetation. Tree biomass data is derived from stem diameter (at 1.3 m) and tree height using Marklund (1988) biomass functions. Aboveground biomass of ground vegetation is derived from biomass harvest of all aboveground parts of the vegetation in subplots. Belowground biomass was estimate based on published ratios (Nordin et a. 1998). Total biomass refers to the combined biomass of tree and ground vegetation. Besides data related to the species the file contain information on site id, latitude of the experimental sites, treatment, time (years) since last thinning operation and latitude (degrees) north of the southernmost site. Treatments were: Thinning (Th), No thinning (NoTh), Nitrogen fertilization (N), Thinning+ nitrogen fertilization (Th+N), and Thinning+N and P fertilization (Th+N+P).
DOI: 10.5061/dryad.d5m8f/4
title: Timber production

description: Data presented is increase in stem growth of Scots Pine (Pinus sylvestris) between repeated measurements of stem diameter. Production is expressed as stem volume increment (m3) per ha over the experimental period. Besides data on timber production the file contain data on site id, latitude of the experimental sites, treatment, time (years) since last thinning operation and latitude (degrees) north of the southernmost site. Treatments were: Thinning (Th), No thinning (NoTh), Nitrogen fertilization (N), Thinning+ nitrogen fertilization (Th+N), and Thinning+N and P fertilization (Th+N+P).
DOI: 10.5061/dryad.f357r/10
title: Processed behavioral and neurophysiological data 10
DOI: 10.5061/dryad.f357r/11
title: Processed behavioral and neurophysiological data 11
DOI: 10.5061/dryad.f357r/12
title: Processed behavioral and neurophysiological data 12
DOI: 10.5061/dryad.f357r/13
title: Processed behavioral and neurophysiological data 13
DOI: 10.5061/dryad.f357r/14
title: Processed behavioral and neurophysiological data 14
DOI: 10.5061/dryad.f357r/8
title: Processed behavioral and neurophysiological data 8
DOI: 10.5061/dryad.f357r/9
title: Processed behavioral and neurophysiological data 9
DOI: 10.5061/dryad.mk4r5/1
title: Figure 1
DOI: 10.5061/dryad.mk4r5/2
title: Figure 2
DOI: 10.5061/dryad.mk4r5/3
title: Figure 3
DOI: 10.5061/dryad.mk4r5/4
title: Figure 4
DOI: 10.5061/dryad.nm962/1
title: chest_pca_data_v1

description: This data file contains the source data for the associated publication.
DOI: 10.5061/dryad.nr780/7
title: data_folders

description: A folder containing all of the Avida data.
DOI: 10.5061/dryad.nr780/8
title: sub_files

description: A folder containing all of the submission scripts for the Avida experiments. These files contain the parameters altered from the main Avida configuration file.
DOI: 10.5061/dryad.nr780/9
title: figures_statistics

description: Python script to create the figures and perform statistical analyses.
DOI: 10.5061/dryad.p52qh/1
title: Data supporting publication

description: This is the source data for the publication.
DOI: 10.5061/dryad.qt71v/1
title: Figure 2 data
DOI: 10.5061/dryad.s7jb3/5
title: FlowerLuresOdour

description: Olfactory measurements of the flower lures in the field.
DOI: 10.5061/dryad.s7jb3/7
title: SupFigVisits

description: Expanded description of visits to the flower lures in the field.
DOI: 10.5061/dryad.sc3np/1
title: Artificial Nest Survival

description: Artificial nest analysis data
DOI: 10.5061/dryad.sc3np/2
title: Female Condition

description: Female quality data
DOI: 10.5061/dryad.sc3np/3
title: Laying Period Food Abundance

description: Peak laying period food abundance data
DOI: 10.5061/dryad.sc3np/4
title: Nest Manipulations

description: Experimental nest manipulation data--supplemental food experimental and chipmunk introduction experiment
DOI: 10.5061/dryad.vp312/1
title: Bdata_apt

description: Concatenated HTS sequencing data file, containing unique SELEX-enriched sequences after filtering to remove any sequences of size not matching N, where N = 30 nts (size of the random region in the naive RNA library). Bdata_apt contains the sequences enriched in the presence of NSP2.
DOI: 10.5061/dryad.vp312/2
title: Cdata_apt

description: Concatenated HTS sequencing data file, containing unique SELEX-enriched sequences after filtering to remove any sequences of size not matching N, where N = 30 nts (size of the random region in the naive RNA library). Cdata_apt contains the sequences enriched during the RNA-RNA SELEX against Seg11 without NSP2.
DOI: 10.5061/dryad.vr4sk/1
title: Data Files

description: Focal brain cooling experiments with anaesthetized male Sprague-Dawley rats induced with epilepsy using Penicillin G potassium. Cooling was performed in five different rats for each cooling temperature (15, 20, and 25 degrees Celcius).
DOI: 10.5061/dryad.vr4sk/2
title: Estimation Files

description: Estimation of a temperature-dependent neural mass model from experimental data.
DOI: 10.5061/dryad.001g4/1
title: Jankowski et al. Data
DOI: 10.5061/dryad.2t965/1
title: HDY-17-OR0230R_Genotypes

description: Genotypes at 10 microsatellite loci for 482 coyotes. Sampling locations (state & county) and sampling year (if known), are also provided.
DOI: 10.5061/dryad.3565g/1
title: Species abundances per site

description: This data file contains abundances for all pollinator species at each sampling site used in response diversity analyses.
DOI: 10.5061/dryad.3565g/2
title: Pollinator trait values

description: This file contains trait values for pollinator species used in functional redundancy analyses.
DOI: 10.5061/dryad.3565g/3
title: Sampling site co-ordinates

description: This file contains coordinates for all pollinator sampling sites.
DOI: 10.5061/dryad.35q4h/24
title: IQTREE Sequences, full data set, with Liolaemus tenuis tenuis.

description: IQTREE Sequences (input) in nexus format, full data set, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/26
title: IQTREE Results, ultraconserved elements dataset, with Liolaemus tenuis tenuis.

description: IQTREE Results (phylogenetic tree), ultraconserved elements (UCEs) dataset, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/27
title: IQTREE Results, full dataset, without Liolaemus tenuis tenuis.

description: IQTREE Results (phylogenetic tree), full dataset, excluding Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.35q4h/28
title: IQTREE Results, full dataset, with Liolaemus tenuis tenuis.

description: IQTREE Results (phylogenetic tree), full dataset, with Liolaemus tenuis tenuis.
DOI: 10.5061/dryad.421p2/1
title: Sanchez-Baracaldo_etal_2017_PNAS

description: Alignments for phylogenetic analyses of cyanobacteria and photosynthetic eukaryotes: 26 genes and 119 taxa; 49 cyanobacteria taxa including 136 proteins.  Files to perform molecular clock analyses: code, calibration points, alignment including eight genes.  Stochastic mapping: files and nexus file with character states for freshwater, marine and brackish.