cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/100797
title: Multibeam Echosounder data collected during research cruise KM0618 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7533020.v3
title: pig-growth-data-plink.zip

description: pig growth traits related dataset
DOI: 10.7284/100798
title: Multibeam Echosounder data collected during research cruise KM0618 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532972
title: Tuberculosis knowledge, attitude and practice among healthcare workers during the 2016 Hajj

description: Dataset relates to a cross-sectional study to assess knowledge, attitude and practice (KAP) of HCWs deployed during the 2016 Hajj regarding TB and its management using an anonymous self-administered questionnaire.<br>
DOI: 10.6084/m9.figshare.7532978
title: Whole Slide Image Samples

description: Whole slide images for testing automatic analysis.
DOI: 10.6084/m9.figshare.7532996
title: Effect of pre-gestational weight and gestational weight gain in women with gestational diabetes controlled with medication on pregnancy outcomes – is recommended weight gain too liberal?

description: This is a retrospective cohort study of women with GDM treated with glucose-lowering agents that were followed and gave birth between 2005 and 2015 in the Assaf Harofeh medical center, Israel. Classification and regression tree method identified four groups according to adverse outcomes, consisted of 74 women with pre-gestational BMI below 25, 98 women with BMI 25–31, 90 women 31–39 and 18 women above 39. Respectively, median GWG was 12 kg (8–16), 11 kg (8–15), 7.5 kg (3.75–11) and 5 kg (–1.5 to 11.5) (<i>p</i> p p = .036) for adverse pregnancy outcomes compared with participants who gained less than the median. Maternal obesity is related to adverse pregnancy outcomes. Women with GDM with normal pre-gestational BMI who gained weight according to IOM recommendations still experienced adverse outcomes.
DOI: 10.7284/100799
title: Multibeam Echosounder data collected during research cruise KM0619 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532996.v1
title: Effect of pre-gestational weight and gestational weight gain in women with gestational diabetes controlled with medication on pregnancy outcomes – is recommended weight gain too liberal?

description: This is a retrospective cohort study of women with GDM treated with glucose-lowering agents that were followed and gave birth between 2005 and 2015 in the Assaf Harofeh medical center, Israel. Classification and regression tree method identified four groups according to adverse outcomes, consisted of 74 women with pre-gestational BMI below 25, 98 women with BMI 25–31, 90 women 31–39 and 18 women above 39. Respectively, median GWG was 12 kg (8–16), 11 kg (8–15), 7.5 kg (3.75–11) and 5 kg (–1.5 to 11.5) (<i>p</i> p p = .036) for adverse pregnancy outcomes compared with participants who gained less than the median. Maternal obesity is related to adverse pregnancy outcomes. Women with GDM with normal pre-gestational BMI who gained weight according to IOM recommendations still experienced adverse outcomes.
DOI: 10.7284/100800
title: Multibeam Echosounder data collected during research cruise KM0620 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100801
title: Multibeam Echosounder data collected during research cruise KM0620 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532978.v2
title: Demo Whole Slide Images

description: Whole slide images for testing automatic analysis.
DOI: 10.7284/100802
title: Multibeam Echosounder data collected during research cruise KM0621 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532927
title: Supplementary Table S4 and S5 for manuscript "Evolutionary rates of bumblebee genomes are faster at lower elevations"

description: Concatenated orthologous sequences of 14 bumblebees species (<i>Bombus</i> spp.). Bumblebees (12 species) were sequenced with both directions of 150 bp reads representing approximately 100×coverage of the genome. The clean reads were used for de novo assembly with IDBA-UD. Previously published genomes of <i>B. terrestris</i> (RefSeq assembly accession: GCF_000214255.1) and <i>B. impatiens</i> (RefSeq assembly accession: GCF_000188095.2) were also used. The coding sequence of the longest exon of each nuclear gene (CDS-L) was extracted. The orthologous CDS-L sequences among the 14 species were identified and aligned. All the nuclear sequences (CDS-L) were concatenated into the NUC file (Supplementary_Table_S4(NUC).txt, in fasta format). The 13 coding genes in the mitochondrial genome were extracted and aligned manually. All the mitochondrial sequences were concatenated into the MIT file with fasta format (Supplementary_Table_S5(MIT).txt, in fasta format).
DOI: 10.6084/m9.figshare.7532927.v1
title: Supplementary Table S4 and S5 for manuscript "Evolutionary rates of bumblebee genomes are faster at lower elevations"

description: Concatenated orthologous sequences of 14 bumblebees species (<i>Bombus</i> spp.). Bumblebees (12 species) were sequenced with both directions of 150 bp reads representing approximately 100×coverage of the genome. The clean reads were used for de novo assembly with IDBA-UD. Previously published genomes of <i>B. terrestris</i> (RefSeq assembly accession: GCF_000214255.1) and <i>B. impatiens</i> (RefSeq assembly accession: GCF_000188095.2) were also used. The coding sequence of the longest exon of each nuclear gene (CDS-L) was extracted. The orthologous CDS-L sequences among the 14 species were identified and aligned. All the nuclear sequences (CDS-L) were concatenated into the NUC file (Supplementary_Table_S4(NUC).txt, in fasta format). The 13 coding genes in the mitochondrial genome were extracted and aligned manually. All the mitochondrial sequences were concatenated into the MIT file with fasta format (Supplementary_Table_S5(MIT).txt, in fasta format).
DOI: 10.6084/m9.figshare.7532978.v3
title: Whole Slide Image Samples

description: Whole slide images for testing automatic analysis.
DOI: 10.7284/100803
title: Multibeam Echosounder data collected during research cruise KM0621 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100804
title: Multibeam Echosounder data collected during research cruise KM0622 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532897
title: Additional File 1. - S1_STR confirmation.pdf

description: 1. Additional File 1. - S1_STRof newly established cell BxPC-M8 confirms no cross contamination.2. Additional File 2. - Table1_List of primers used in qRT-PCR for relative expressed genes.<br>
DOI: 10.7284/100805
title: Multibeam Echosounder data collected during research cruise KM0622 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100806
title: Multibeam Echosounder data collected during research cruise KM0623 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532825
title: Melissopalynology in Brazil: a map of pollen types and published productions between 2005 and 2017

description: We analysed scientific production related to melissopalynology in Brazil and surveyed the pollen types described in publications, producing a melissopalynological database. We inventoried articles published between 2005 and 2017 indexed in the Web of Science (WoS) and Scientific Electronic Library Online (SciELO). Searches in WoS involved researching the terms (1) mel?ssopalynolog*, (2) pollen analy?* AND honey, (3) bee* pollen, (4) pollen NEAR/15 bee*, (5) pollen analysis of honey, and (6) pollen analy?* NEAR/15 honey; in SciELO, we used the search terms (1) melissopalinologia, (2) pólen AND mel, (3) pólen AND abelha, (4) pólen apícola, and (5) análise polínica AND mel. Additionally, we consulted the resume of the principal authors of melissopalynology research in Brazil to identify articles published during that period but not appearing in other database searches. We uncovered a total of 133 publications distributed among 56 journals, with a mean of 4.92 authors/publication. A total of 1,362 pollen types were identified, representing 130 botanical families. Among those, the most well represented in terms of numbers of pollen types were Fabaceae (270), Asteraceae (89), Euphorbiaceae (61), Rubiaceae (58), Myrtaceae (51), Malvaceae (51), Bignoniaceae (49) and Arecaceae (48). Fifty-nine bee species were mentioned in the studies, distributed among 19 genera. <i>Apis mellifera</i> was the most frequently mentioned bee species (73 publications), followed by the native bee species <i>Tetragonisca angustula</i> (13 publications). The pollen types most frequently mentioned in the articles were (in decreasing order): <i>Eucalyptus, Myrcia, Cecropia</i>, <i>Mimosa caesalpiniifolia</i>, <i>Vernonia</i>, Poaceae type and <i>Croton</i>. The inventoried publications comprised all five geographical regions of Brazil, especially the northeastern region of that country, with 59 publications. There are still large areas of Brazil without any melissopalynological studies, however, principally the central-western and southern regions. As such, more research will be necessary to fill gaps in our knowledge of Brazilian palynodiversity.
DOI: 10.7284/100807
title: Multibeam Echosounder data collected during research cruise KM0624 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532825.v1
title: Melissopalynology in Brazil: a map of pollen types and published productions between 2005 and 2017

description: We analysed scientific production related to melissopalynology in Brazil and surveyed the pollen types described in publications, producing a melissopalynological database. We inventoried articles published between 2005 and 2017 indexed in the Web of Science (WoS) and Scientific Electronic Library Online (SciELO). Searches in WoS involved researching the terms (1) mel?ssopalynolog*, (2) pollen analy?* AND honey, (3) bee* pollen, (4) pollen NEAR/15 bee*, (5) pollen analysis of honey, and (6) pollen analy?* NEAR/15 honey; in SciELO, we used the search terms (1) melissopalinologia, (2) pólen AND mel, (3) pólen AND abelha, (4) pólen apícola, and (5) análise polínica AND mel. Additionally, we consulted the resume of the principal authors of melissopalynology research in Brazil to identify articles published during that period but not appearing in other database searches. We uncovered a total of 133 publications distributed among 56 journals, with a mean of 4.92 authors/publication. A total of 1,362 pollen types were identified, representing 130 botanical families. Among those, the most well represented in terms of numbers of pollen types were Fabaceae (270), Asteraceae (89), Euphorbiaceae (61), Rubiaceae (58), Myrtaceae (51), Malvaceae (51), Bignoniaceae (49) and Arecaceae (48). Fifty-nine bee species were mentioned in the studies, distributed among 19 genera. <i>Apis mellifera</i> was the most frequently mentioned bee species (73 publications), followed by the native bee species <i>Tetragonisca angustula</i> (13 publications). The pollen types most frequently mentioned in the articles were (in decreasing order): <i>Eucalyptus, Myrcia, Cecropia</i>, <i>Mimosa caesalpiniifolia</i>, <i>Vernonia</i>, Poaceae type and <i>Croton</i>. The inventoried publications comprised all five geographical regions of Brazil, especially the northeastern region of that country, with 59 publications. There are still large areas of Brazil without any melissopalynological studies, however, principally the central-western and southern regions. As such, more research will be necessary to fill gaps in our knowledge of Brazilian palynodiversity.
DOI: 10.6084/m9.figshare.12863849
title: Blinding Identification numbers for RW peptides

description: Blinding identification numbers for the RW peptides. the two ID numbers (Ida1 and Ida2) indicate the blinding IDs for two different aliquotings of peptides.
DOI: 10.6084/m9.figshare.12863849.v1
title: Blinding Identification numbers for RW peptides

description: Blinding identification numbers for the RW peptides. the two ID numbers (Ida1 and Ida2) indicate the blinding IDs for two different aliquotings of peptides.
DOI: 10.6084/m9.figshare.7532810
title: Supp. Fig. 5: Exponential growth rates and time lags

description: Growth rates and time lags
DOI: 10.6084/m9.figshare.7532816
title: chimpanzee

description: Just Movie<br>
DOI: 10.7284/100808
title: Multibeam Echosounder data collected during research cruise KM0624 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532810.v1
title: Supp. Fig. 5: Exponential growth rates and time lags

description: Growth rates and time lags
DOI: 10.6084/m9.figshare.7532807
title: Supp. Fig. 7: Pair outcomes in complex medium

description: All pair outcomes in the complex, undefined medium.
DOI: 10.6084/m9.figshare.7532807.v1
title: Supp. Fig. 7: Pair outcomes in complex medium

description: All pair outcomes in the complex, undefined medium.
DOI: 10.7284/100810
title: Multibeam Echosounder data collected during research cruise KM0625 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532804
title: Supp. Fig. 1: All pairwise outcomes in defined medium

description: All pairwise outcomes in the minimal, defined medium.
DOI: 10.6084/m9.figshare.7532816.v3
title: chimpanzee

description: Just Movie<br>
DOI: 10.6084/m9.figshare.7532798
title: Supp. Fig. 2: Trios in Complex Medium

description: Outcomes of trio experiments in complex medium
DOI: 10.6084/m9.figshare.7532804.v1
title: Supp. Fig. 1: All pairwise outcomes in defined medium

description: All pairwise outcomes in the minimal, defined medium.
DOI: 10.7284/100811
title: Multibeam Echosounder data collected during research cruise KM0626 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532792
title: Supp. Fig. 2: Quads in Defined Medium

description: Outcomes of quad experiments in defined medium
DOI: 10.6084/m9.figshare.7532798.v1
title: Supp. Fig. 2: Trios in Complex Medium

description: Outcomes of trio experiments in complex medium
DOI: 10.6084/m9.figshare.7532801
title: Supp. Fig. 2: Quads in Complex Medium

description: Outcomes of quad experiments in complex medium
DOI: 10.6084/m9.figshare.7532801.v1
title: Supp. Fig. 2: Quads in Complex Medium

description: Outcomes of quad experiments in complex medium
DOI: 10.6084/m9.figshare.7532780
title: Fig. 4a,c Threshold growth rate data

description: Measurement of time-to-threshold growth rates for all replicates
DOI: 10.6084/m9.figshare.7532789
title: Supp. Fig. 2: Trios in Defined Medium

description: Outcomes of trio experiments in defined medium.
DOI: 10.6084/m9.figshare.7532792.v1
title: Supp. Fig. 2: Quads in Defined Medium

description: Outcomes of quad experiments in defined medium
DOI: 10.7284/100812
title: Multibeam Echosounder data collected during research cruise KM0626 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532777
title: Fig. 4 All pairwise outcomes

description: All pairwise outcomes, including starting fraction, ending fraction, and colonies counted on last day
DOI: 10.6084/m9.figshare.7532780.v1
title: Fig. 4a,c Threshold growth rate data

description: Measurement of time-to-threshold growth rates for all replicates
DOI: 10.6084/m9.figshare.7532789.v1
title: Supp. Fig. 2: Trios in Defined Medium

description: Outcomes of trio experiments in defined medium.
DOI: 10.7284/100813
title: Multibeam Echosounder data collected during research cruise KM0627 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532732
title: Demircan et al. SciData.Supplementary fileSupplementary Files

description: Results of 16S rRNA analysis by automatic pipeline (Nephele-NIH, https://nephele.niaid.nih.gov) -DADA2 option was used. These files are linked to the manuscript (Demircan et al) where the raw data is described in detail. <br>
DOI: 10.7284/100814
title: Multibeam Echosounder data collected during research cruise KM0627 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532732.v1
title: Demircan et al. SciData.Supplementary file

description: Results of 16S rRNA analysis by automatic pipeline (Nephele-NIH, https://nephele.niaid.nih.gov) -DADA2 option was used. These files are linked to the manuscript (Demircan et al) where the raw data is described in detail. <br>
DOI: 10.6084/m9.figshare.7532723
title: CAF study - BDNF data.xlsx

description: BDNF and its receptor TrkB levels in the prefrontal cortex and hippocampus of male Sprague-Dawley rats fed a Cafeteria Diet for 5 months on a restricted feeding regimen v. controls. All data expressed in % of control (beta-actin). Western Blotting.
DOI: 10.7284/100815
title: Multibeam Echosounder data collected during research cruise KM0628 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532720
title: CAF study - Weight data.xlsx

description: Weight data of male Sprague-Dawley rats fed a Cafeteria Diet for 5 months on a restricted feeding regimen vs controls.
DOI: 10.6084/m9.figshare.7532723.v1
title: CAF study - BDNF data.xlsx

description: BDNF and its receptor TrkB levels in the prefrontal cortex and hippocampus of male Sprague-Dawley rats fed a Cafeteria Diet for 5 months on a restricted feeding regimen v. controls. All data expressed in % of control (beta-actin). Western Blotting.
DOI: 10.6084/m9.figshare.7532693
title: Carabus genital dimensions

description: Measurements of genital dimensions for QTL analysis in excel format.
DOI: 10.6084/m9.figshare.7532714
title: <i>Koji</i> glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice

description: <i>Koji</i>, which is manufactured by proliferating non-pathogenic fungus <i>Aspergillus oryzae</i> on steamed rice, is the base for Japanese traditional fermented foods. We have revealed that <i>koji</i> and related Japanese fermented foods and drinks such as amazake, shio-<i>koji</i>, unfiltered sake and miso contain abundant glycosylceramide. Here, we report that feeding of <i>koji</i> glycosylceramide to obese mice alters the cholesterol metabolism . Liver cholesterol was significantly decreased in obese mice fed with <i>koji</i> glycosylceramide. We hypothesized that their liver cholesterol was decreased because it was converted to bile acids. Consistent with the hypothesis, many bile acids were increased in the cecum and feces of obese mice fed with <i>koji</i> glycosylceramide. Expressions of CYP7A1 and ABCG8 involved in the metabolism of cholesterol were significantly increased in the liver of mice fed with <i>koji</i> glycosylceramide. Therefore, it was considered that <i>koji</i> glycosylceramide affects the cholesterol metabolism in obese mice. Koji glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice.
DOI: 10.6084/m9.figshare.7532720.v1
title: CAF study - Weight data.xlsx

description: Weight data of male Sprague-Dawley rats fed a Cafeteria Diet for 5 months on a restricted feeding regimen vs controls.
DOI: 10.7284/100816
title: Multibeam Echosounder data collected during research cruise KM0629 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532708
title: The recessive C locus in the <i>MITF</i> gene plays a key regulatory role in the plumage colour pattern of duck (<i>Anas platyrhynchos</i>)

description: 1. The c/c alleles are responsible for the white plumage colour of ducks; however, the gene corresponding to this locus is still unclear. In order to identify the locus-related candidate gene associated with duck’s plumage colour pattern, it was necessary to analyse the whole genome resequencing data. 2. A total of 929,465 SNPs in chromosome 13 and 1,688 SNPs in the region of the Microphthalmia-Associated Transcription Factor (<i>MITF</i>) gene were identified from whole genome resequencing data analysis. After construction of an F<sub>ST</sub> plot from chromosome 13, <i>MITF</i> was highlighted as a candidate gene, possessing the highest F<sub>ST</sub> value (0.811) on chromosome 13. 3. Six novel SNPs were discovered, located in the intronic region of the <i>MITF</i> gene. F2 progeny of <i>Kaiya</i> <i>×</i> <i>Liancheng</i> ducks (<i>N</i> = 1,061) were selected for genotyping by the Restriction Fragment Length Polymorphism (RFLP) technique. Association analysis using Haploview software was used for validation of the results. 4. Association results between SNPs and phenotypes showed significant association with corresponding phenotypes. All the significantly associated SNPs were located in the identified candidate gene. 5. The identified candidate gene provided novel information which is important in marker-assisted selection and breeding of duck and for the investigation of the C locus recessive white genetic mechanisms underlying plumage colour pattern.
DOI: 10.6084/m9.figshare.7532714.v1
title: <i>Koji</i> glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice

description: <i>Koji</i>, which is manufactured by proliferating non-pathogenic fungus <i>Aspergillus oryzae</i> on steamed rice, is the base for Japanese traditional fermented foods. We have revealed that <i>koji</i> and related Japanese fermented foods and drinks such as amazake, shio-<i>koji</i>, unfiltered sake and miso contain abundant glycosylceramide. Here, we report that feeding of <i>koji</i> glycosylceramide to obese mice alters the cholesterol metabolism . Liver cholesterol was significantly decreased in obese mice fed with <i>koji</i> glycosylceramide. We hypothesized that their liver cholesterol was decreased because it was converted to bile acids. Consistent with the hypothesis, many bile acids were increased in the cecum and feces of obese mice fed with <i>koji</i> glycosylceramide. Expressions of CYP7A1 and ABCG8 involved in the metabolism of cholesterol were significantly increased in the liver of mice fed with <i>koji</i> glycosylceramide. Therefore, it was considered that <i>koji</i> glycosylceramide affects the cholesterol metabolism in obese mice. Koji glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice.