cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/pgq-n35-fth
title: †Zygospira Hall, 1862

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24799299.v1
title: mdd2023diverse

description: Summary statistics of cross-ancestry major depressive disorder GWAS
DOI: 10.3535/mz8-d2r-610
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tt4-7zg-dsn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/23t-08l-g6e
title: †Atrypidae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/38f-c9c-qqy
title: Neoeponides Reiss, 1960

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28464683.v1
title: De-identified data for spinal manipulative therapy and spinal CSF leak study

description: De-identified, aggregated data for baseline characteristics, the primary outcome, and data used to plot propensity score densities and cumulative incidences for our study examining the potential association between spinal manipulative therapy and spinal CSF leak.
DOI: 10.3535/hk0-ct2-cxa
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nyt-2dw-smj
title: †Atrypidae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3510386.v1
title: Supplement 1. Source code for simulation model, simulation readme, and associated parameter files.

description: File List fish.jar (md5: d366caa56781738816a87f7b31bf5226)<br> fish.src.jar (md5: 387da049a0c835710df147f6d03cfe99)<br> fish_stats.txt (md5: e437e19552b37e20871097ff259cbe8a)<br> sim_parameters.txt (md5: 093ccbfb4f6c1642172d6cdd067f35ab)<br> readme.pdf (md5: 57659754dff53bdd4fa07ebbc88e3973)<br> Description fish.jar contains the compiled program to run simulation model used in paper.<br> fish.src.jar contains the Java source for simulation model used in paper.<br> fish_stats.txt contains parameter values for simulation fish/fishes.<br> sim_parameters.txt contains parameter values for the full simulation.<br> readme.pdf contains instruction for operation of the simulation.
DOI: 10.6084/m9.figshare.3824379.v2
title: Cell-contact-dependent activation of CD4<sup>+</sup> T cells by adhesion molecules on synovial fibroblasts

description: <i>Objective</i>: To determine how cell–cell contact with synovial fibroblasts (SF) influence on the proliferation and cytokine production of CD4<sup>+ </sup>T cells. <i>Methods</i>: Naïve CD4<sup>+ </sup>T cells were cultured with SF from rheumatoid arthritis patients, stimulated by anti-CD3/28 antibody, and CD4<sup>+ </sup>T cell proliferation and IFN-γ/IL-17 production were analyzed. To study the role of adhesion molecules, cell contact was blocked by transwell plate or anti-intracellular adhesion molecule-1 (ICAM-1)/vascular cell adhesion molecule-1(VCAM-1) antibody. To study the direct role of adhesion molecules for CD4<sup>+ </sup>T cells, CD161<sup>+ </sup>or CD161<sup>-</sup> naïve CD4<sup>+ </sup>T cells were stimulated on plastic plates coated by recombinant ICAM-1 or VCAM-1, and the source of IFN-γ/IL-17 were analyzed. <i>Results</i>: SF enhanced naïve CD4<sup>+ </sup>T cell proliferation and IFN-γ/IL-17 production in cell-contact and in part ICAM-1-/VCAM-1-dependent manner. Plate-coated ICAM-1 and VCAM-1 enhanced naïve CD4<sup>+ </sup>T cell proliferation and IFN-γ production, while VCAM-1 efficiently promoting IL-17 production. CD161<sup>+ </sup>naïve T cells upregulating LFA-1 and VLA-4 were the major source of IFN-γ/IL-17 upon interaction with ICAM-1/VCAM-1. <i>Conclusion</i>: CD4<sup>+ </sup>T cells rapidly expand and secrete IFN-γ/IL-17 upon cell-contact with SF via adhesion molecules. Interfering with ICAM-1-/VCAM-1 may be beneficial for inhibiting RA synovitis.
DOI: 10.3535/n2e-990-d25
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yw2-86d-n4v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3519269.v1
title: Appendix F. Correlation matrices for predictor variables.

description: Correlation matrices for predictor variables.
DOI: 10.3535/268-9hk-8kc
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n4h-al1-x4b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14357105.v1
title: FreshMouseBrainCellRanger1.2.0

description: scATAC-seq dataset processed for inclusion in scATAC.Explorer R package. scATAC.Explorer is an R package containing a curated collection of publicly available scATAC-seq datasets that can easily be searched and retrieved within R. Included datasets are processed into a consistent format for ease of analysis.<br>This dataset was not generated by our lab. Please also give credit to the source the dataset was retrieved from, included in reference field.
DOI: 10.6084/m9.figshare.27988343.v2
title: <b>Long-Term Non-skeletal Complications in Patients with Thyroid Cancer </b><b>with Hypoparathyroidism Following Total Thyroidectomy: A Retrospective Nationwide Cohort Study</b>

description: The definition of the diseaseSupplementary Table 1. Baseline characteristics by presence or absence of hypoparathyroidism in thyroid cancer patientsSupplemental Table 2. Incidence rate of non-skeletal outcomes and hazard ratios for thyroid cancer patients with postsurgical hypoparathyroidism and matched control groupSupplementary Table 3. Incidence rate of non-skeletal outcomes and hazard ratios for patients without hypoparathyroidism and matched control groupSupplementary Table 4. Comparison of the incidence rate and hazard ratio of non-skeletal outcomes according to the presence or absence of hypoparathyroidism in thyroid cancer patientsSupplementary Table 5. Risk of renal outcomes and cataract by age and gender
DOI: 10.3535/lyy-6c6-ndp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yhb-ngd-jty
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5986819.v3
title: 2.Tumor budding clinical data

description: clinical data
DOI: 10.3535/67z-5ms-wk0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xcf-n31-9z3
title: †Atrypidae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1304350.v1
title: Data Inter-training interval

description: These data show the results of four tests, one pretest and three posttest. It consist of three variables. Each task is performed three times (three trials). The movement times, the time it took to perform three different functional tasks. The duration of the maximal handopening during one of these tasks. And the deviation of the grip force control, in a task where a handle needed to be grasped with the correct amount of force.
DOI: 10.3535/gbg-amt-xlv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tc1-mdp-gbs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13213823.v1
title: Maximum height of mountain forests abruptly decreases above an elevation breakpoint

description: Dataset for the manuscript "Maximum height of mountain forests abruptly decreases above an elevation breakpoint". The dataset includes, for the whole Spanish Pyrenees, information on maximum tree height, terrain elevation, tree species composition and ancillary information on terrain aspect and slope, continentality, and several soil-related variables as gathered from SoilGrids.<br>The dataset contains two data frames, one that defines maximum tree height with percentile 90, and a second one with percentile 95. Each row corresponds to a 20x20m cell in a grid covering the Spanish Pyrenees
DOI: 10.3535/apj-zsp-hsl
title: †Lissatrypidina Copper, in Copper & Gourvennec, 1996

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tsf-xg2-gk4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15169104.v2
title: RNAseq is not required to determine stable reference genes for qPCR normalization

description: The original contributions presented in the study are included in the article & Supplementary Data. The metadata for the RNA-Seq and qPCR include the normalized count matrices for the RNAseq data, qPCR Cq values and differential expression analysis, primer sequences, Coefficient of Variation and Normfinder analysis. Further inquiries can be directly addressed to the corresponding author(s).
DOI: 10.6084/m9.figshare.18553775.v1
title: ExternalAmbassadorResearchData.xlsx

description: This is a dataset collected for measuring the attitude from Millennials towards online external ambassadors.
DOI: 10.3535/397-wwd-9fj
title: †Atrypidae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bxp-7r5-t4s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z9r-x0v-70a
title: †Atrypidae Gill, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l46-9e4-2lc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yv1-3j7-wav
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/pwm6y5jcpx
title: Systematic Literature Review on Social Insurance for Supporting Coal Mine Workers A Welfare Programs in Coal Dependent Regions of Jharkhand, India

description: Coal has been the backbone of Jharkhand's economy and has employed thousands of workers. But coal mine workers face severe occupational hazards, financial insecurity and limited access to social welfare programs. This study conducts a systematic review (2010-2024) to assess the effectiveness of social insurance schemes for coal miners in Jharkhand. Using the Preferred Reporting item for the Systematic Review and Meta-Analysis (PRISMA) framework, 30 studies were analysed to evaluate coverage, implementation challenges and gaps in key policies including Employee State Insurance (ESI), Coal Mines Provident Fund (CMPF) and government sponsored pension schemes. The results show several problems, including poor health care, slow compensation, and the omission of contractual and informal workers from important welfare programs. However, the corporate social responsibility initiatives by Coal India Limited and other entities to provide extra support are inconsistent and thus not very effective in the long run. The review also reveals the urgent need for policy changes to increase financial security, extend insurance coverage to informal workers, improve the availability of healthcare and compensation systems. This research helps to expand the more general discussion about labour welfare in coal-reliant regions, therefore asking for a more comprehensive and long-term social insurance policy. As Jharkhand transitions to a more diversified economic environment, reinforcing these welfare programs is essential for guaranteeing coal miners and their families a dignified and stable living.
DOI: 10.3535/61y-k3l-1tq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/70b-t3a-q03
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25164839.v2
title: transmission lines

description: 传输线的图像数据集
DOI: 10.6084/m9.figshare.26869087.v1
title: Chronic kidney disease among hypertension

description: This file is attached for publicity
DOI: 10.3535/axw-drv-cnx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qnl-aja-03t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5061/dryad.bq583
title: Data from: Little impact of hatchery supplementation that uses native broodstock on the genetic structure and diversity of steelhead trout revealed by a large scale spatio-temporal microsatellite survey
DOI: 10.3535/0wk-xyn-6rn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z4a-ejd-8qc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23497673.v2
title: Data on lifespan, sleep and motor performance of Drosophila melanogaster after feeding genetically modified <em>Saccharomyces cerevisiae</em> .xlsx

description: In this study, we investigated the links between gut microbial genetic variation and host phenotypes of lifespan, sleep and motor performance using <em>Saccharomyces cerevisiae</em> and <em>Drosophila</em> melanogaster as research models.
DOI: 10.17632/7hyzhp8wrf
title: Data of mRNA and protein abundances of androgen receptor splice variants in castration-resistant prostate cancer

description: R scripts (.R files) and raw data of splicing junction (SJ) reads from 34 CRPC adenocarcinoma samples in the Beltran cohort, 81 CRPC samples in the Prostate Cancer Medically Optimized Genome-Enhanced Therapy (PROMOTE) cohort, and 181 CRPC samples in the Stand Up To Cancer (SU2C) cohort are indicated by individual file names. "Figure 3_quantitation.xlsx" is the RT-qPCR raw data of the ratios of AR-V7 to AR-FL mRNA in LNCaP95 cells cultured in androgen-deprived or -replenished condition as well as in hormone-sensitive and castration-resistant LuCaP 35 and 96 PDXs. "Figure 4_Western blots.pptx" is the Western Blotting raw data of the ratios of AR-V7 to AR-FL protein in these cells and PDXs. "Figure 4_quantitation.xlsx" is the quantitation data of the " Figure 4_Western blots.pptx".
DOI: 10.17632/884r6v9zpz
title: Data for: Robust tensor-based techniques for antenna array-based GNSS receivers in scenarios with highly correlated multipath components

description: Code and dataset for Monte Carlo simulation performed in paper. Includes 2000 samples of (correlated) code factor matrices of GPS C/A code from satellite no. 17, bandwidth B = 1.023 MHz, epoch duration t = 1 ms, chip period Tc = 1/B, sampled at Ts = 1/2B (N = 2046 samples/epoch), transmitted with carrier freq. fc = 1575.42 MHz, correlator bank spaced between [-Tc,Tc] with Q = 11 taps. For model order L = 3 and L = 4.
DOI: 10.3535/4bn-gh5-9ch
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dbz-bwz-kwc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/56s-z76-ww9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cyx-rj2-5kx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21026443.v3
title: RNA-Seq data and pseudotargeted lipidomic analysis (LC-MS data) in "RETSAT impairs cancer cell’s ferroptosis defence system by altering retinoid metabolism".

description: In our study titled "RETSAT impairs cancer cell’s ferroptosis defence system by altering retinoid metabolism", we compared the gene expression pattern and abundance of lipids between Cas-NC and RETSAT-KO A549 cells treated with DMSO, IKE, or RSL3 using RNA-Seq and pseudotargeted lipidomic analysis respectively. The gene expression patterns of Cas-NC and RETSAT-KO were also investigated by RNA-Seq in HT1080 and H1299.
DOI: 10.6084/m9.figshare.25093205.v1
title: Mitochondrial genomes, NUMTs, NUMT flanking 2000bp sequence, and TE consensus sequence of ten species in Orthoptera.

description: <b>Genomic and transcriptomic perspectives on the origin, evolution and application of NUMTs in Orthoptera. </b>The result files generated in this study include Mitochondrial genomes, NUMTs, NUMT flanking 2000bp sequence, and TE sequence.
DOI: 10.3535/2v6-89r-az7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hc4-bbp-f6p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5443615
title: REM Sleep Imposes a Vascular Load in COPD Patients Independent of Sleep Apnea

description: Arterial stiffness, a marker for cardiovascular risk, is increased in patients with Chronic Obstructive Pulmonary Disease (COPD) and Obstructive Sleep Apnea (OSA). The specific influence of both on arterial stiffness during sleep is unknown. Nocturnal arterial stiffness (Pulse Propagation Time (PPT) of the finger pulse wave) was calculated in 142 individuals evaluated for sleep apnea: 27 COPD patients (64.7 ± 11y, 31.2 ± 8 kg/m<sup>2</sup>), 72 patients with cardiovascular disease (CVD group, 58.7 ± 13y, 33.6 ± 6 kg/m<sup>2</sup>) and 43 healthy controls (HC group 49.3 ± 12y, 27.6 ± 3 kg/m<sup>2</sup>). Sleep stage related PPT changes were assessed in a subsample of COPD patients and matched controls (n = 12/12). Arterial stiffness during sleep was increased in COPD patients (i.e. shortened PPT) compared to healthy controls (158.2 ± 31 vs. 173.2 ± 38 ms, p = 0.075) and to patients with CVD (161.4 ± 41 ms). Arterial stiffening was particular strong during REM sleep (145.9 ± 28 vs. 172.4 ± 43 ms, COPD vs. HC, p = 0.003). In COPD, time SaO<sub>2</sub> &lt; 90% was associated with reduced arterial stiffness (Beta +1.7 ms (1.1–2.3)/10 min, p &lt; 0.001). Sleep apnea did not affect PPT. In COPD, but not in matched controls, arterial stiffness increased from wakefulness to REM-sleep (ΔPPT-8.9 ± 10% in COPD and 3.7 ± 12% in matched controls, p = 0.021). Moreover, REM-sleep related arterial stiffening was correlated with elevated daytime blood pressure (r = −0.92, p &lt; 0.001) and increased myocardial oxygen consumption (r = −0.88, p &lt; 0.01). Hypoxia and REM sleep modulate arterial stiffness. In contrast to healthy controls, REM sleep imposes a vascular load in COPD patients independent of sleep apnea indices, intermittent and sustained hypoxia. The link between REM-sleep, vascular stiffness and daytime cardiovascular function suggests that REM-sleep plays a role for increased cardiovascular morbidity of COPD patients.
DOI: 10.3535/bt7-r9k-t10
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l84-vg5-zs9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14479896.v2
title: Classification parameters

description: Parameters
DOI: 10.6084/m9.figshare.19825246.v1
title: NEXAFS images of gecko tissue

description: The dataset consists of NEXAFS images of gecko tissue collected at the NSLS NEXAFS microscope endstation. Edges, retardation voltages and scan width are indicated in the files names and also saved with the image metadata. It is recommended to use the matlab-based LDF software to plot the data. The software is available from the authors upon reasonable request.
DOI: 10.6084/m9.figshare.24085524.v1
title: Data release: "Adolescent environmental enrichment induces social resilience and alters neural gene expression in a selectively bred rodent model with anxious phenotype"

description: This is a data release includes all subject data, behavioral data, hormonal data, and RNA-Seq metadata used in the publication <i>"</i><i>Adolescent environmental enrichment induces social resilience and alters neural gene expression in a selectively bred rodent model with anxious phenotype</i><i>" </i>by O'Connor, Hagenauer, et al. https://doi.org/10.1016/j.ynstr.2024.100651<br>The file format is .xlsx, with one spreadsheet containing the data release ("MetaData_for_bHRbLR_EE_SD") with rows representing different subjects (rats) and columns for different variables and one spreadsheet containing the definitions for all variables (columns) in the data release ("Variable Definitions")<i>.</i><b>Publication Abstract:</b> Stress is a major influence on mental health status; the ways that individuals respond to or copes with stressors determine whether they are negatively affected in the future. Stress responses are established by an interplay between genetics, environment, and life experiences. Psychosocial stress is particularly impactful during adolescence, a critical period for the development of mood disorders. In this study we compared two established, selectively-bred Sprague Dawley rat lines, the “internalizing” bred Low Responder (bLR) line versus the “externalizing” bred High Responder (bHR) line, to investigate how genetic temperament and adolescent environment impact future responses to social interactions and psychosocial stress, and how these determinants of stress response interact. Animals were exposed to social and environmental enrichment in adolescence prior to experiencing social defeat and were then assessed for social interaction and anxiety-like behavior. Adolescent enrichment caused bLR rats to display less social avoidance, more social interaction, less submission during defeat, and resilience to the prolonged effects of social stress on corticosterone, while enrichment caused bHR animals to show greater aggression during defeat and during a neutral social encounter, and decreased anxiety-like behavior. To gain insight into the development of social resilience in the anxious phenotype bLRs, RNA-seq was conducted on the hippocampus and nucleus accumbens, two brain regions that mediate stress regulation and social behavior. Gene sets previously associated with stress, social behavior, aggression and exploratory activity were enriched with differential expression in both regions, with a particularly large effect on gene sets that regulate social behaviors. These findings provide further evidence that adolescent enrichment can serve as an inoculating experience against future stressors. The ability to induce social resilience in a usually anxious line of animals by manipulating their environment has translational implications, as it underscores the feasibility of intervention strategies targeted at genetically vulnerable adolescent populations.
DOI: 10.6084/m9.figshare.26487400.v1
title: lsaBGC-Pan Tutorial Input Datasets

description: The two datasets represent inputs for tutorials on investigating the pan-BGC-ome of <i>Streptomyces</i> <i>olivaceus </i>and <i>Aspergillus flavus.</i>
DOI: 10.3535/2w0-8s1-x8c
title: †Lissatrypidina Copper, in Copper & Gourvennec, 1996

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.