cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7583348.v1
title: Long-term neuropathy and quality of life in colorectal cancer patients treated with oxaliplatin containing adjuvant chemotherapy

description: <b>Background:</b> Oxaliplatin, combined with capecitabine (CAPOX) or infused 5-fluorouracil (FOLFOX), is standard of care in the adjuvant treatment of colorectal cancer (CRC). Prospective data on prevalence of oxaliplatin induced acute and long-term neuropathy in a real-life patient population and its effects on quality of life (QOL) and survival is limited, and scarce in CAPOX versus FOLFOX treated, especially in a subarctic climate. <b>Methods:</b> One hundred forty-four adjuvant CRC patients (all 72 CAPOX cases and 72 matched FOLFOX controls) were analyzed regarding oxaliplatin induced sensory neuropathy, which was graded according to NCI-CTCAEv3.0. Ninety-two long-term survivors responded to the QOL (EORTC QLQ-C30) and Chemotherapy-Induced Peripheral Neuropathy (EORTC CIPN20) questionnaires and were interviewed regarding long-term neuropathy. <b>Results:</b> Acute neurotoxicity was present in 94% (136/144) during adjuvant therapy and there was a significant association between acute neurotoxicity and long-term neuropathy (<i>p</i> p = .031), decreased role functioning (<i>p</i> = .040), and more diarrhea (<i>p</i> = .021) in QLQ-C30 items. There were no differences in acute neurotoxicity, long-term neuropathy, or in QOL between CAPOX and FOLFOX treated. Neuropathy showed no pattern of variation according to starting and stopping month or treatment during winter. <b>Conclusions:</b> Neuropathy following oxaliplatin containing adjuvant chemotherapy is present in two-thirds, years after cessation, and impairs some QOL scales. There is no difference in severity of acute or long-term neuropathy between CAPOX and FOLFOX treated and QOL is similar. No seasonal variation in neuropathy was noted.
DOI: 10.7284/121601
title: INS (Inertial Navigation System) data collected during research cruise FK160407 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583291
title: Murray et al. Metadata

description: Collection metadata for Murray et al. and Janes et al. datasets from R Andrew/Borevitz DP15<br>
DOI: 10.6084/m9.figshare.7583291.v1
title: Murray et al. Metadata

description: Collection metadata for Murray et al. and Janes et al. datasets from R Andrew/Borevitz DP15<br>
DOI: 10.7284/121599
title: Meteorological Station data collected during research cruise FK160407 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583276
title: HOI-mech-ELE

description: The mechanistic basis for higher-order interactions and non-additivity in competitive communities Code and simulation output from: Letten, A.D. and Stouffer, D.B. The mechanistic basis for higher-order interactions and non-additivity in competitive communities. <em>Ecology Letters</em>.<br> <strong>01-HOI-generatedata.R</strong> - Generate 'observed' data from simulations of consumer-resource models. See <code>/data</code> for simulation output.<br> <strong>02-HOI-fitmodels.R</strong> - Fit (higher-order) Lotka-Volterra models to observed data and resimulate to compare fits. See <code>/data/modelfits</code> for output.<br> <strong>03-HOI-summarizefits.R</strong> - Summarize static and dynamic fits (Figs 3-8 in ms)
DOI: 10.7284/121597
title: Multibeam Echosounder data collected during research cruise FK160407 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583276.v1
title: HOI-mech-ELE

description: The mechanistic basis for higher-order interactions and non-additivity in competitive communities Code and simulation output from: Letten, A.D. and Stouffer, D.B. The mechanistic basis for higher-order interactions and non-additivity in competitive communities. <em>Ecology Letters</em>.<br> <strong>01-HOI-generatedata.R</strong> - Generate 'observed' data from simulations of consumer-resource models. See <code>/data</code> for simulation output.<br> <strong>02-HOI-fitmodels.R</strong> - Fit (higher-order) Lotka-Volterra models to observed data and resimulate to compare fits. See <code>/data/modelfits</code> for output.<br> <strong>03-HOI-summarizefits.R</strong> - Summarize static and dynamic fits (Figs 3-8 in ms)
DOI: 10.6084/m9.figshare.7583267
title: Past landscape features may be captured by historical floristic data. A case study in northern Italy

description: Historical floras, i.e. lists of plant species recorded in a given geographical area, are not usually considered for capturing past landscape features. In this study, we tested the usefulness of the simultaneous use of historical floristic data and a coeval topographic map to evaluate the main features of the past vegetation landscape and the potential of such data in change detection. Our study site was the Monte Fumaiolo area (northern Italy), where historical floristic data were independently recorded by two famous botanists during the 1930s. Past floristic data were then compared with current cartographic and vegetation data. Despite the fact that the two authors explored a comparable area, they significantly differed in the use of toponyms and in the distribution of floristic records among toponyms. This is reflected by a low floristic similarity at the toponym level between the two data sets. Nevertheless, the species classification into ecological categories allowed to highlight how the two authors recorded similar information on the landscape features. However, the use of these floristic data may have some flaws in landscape change detection.
DOI: 10.6084/m9.figshare.7583261
title: Taxonomy data file

description: Data used in Hacker Taxonomy analysis. Only variables that were used for this are present in the datafile. Well documented, self-explanatory
DOI: 10.6084/m9.figshare.7583267.v1
title: Past landscape features may be captured by historical floristic data. A case study in northern Italy

description: Historical floras, i.e. lists of plant species recorded in a given geographical area, are not usually considered for capturing past landscape features. In this study, we tested the usefulness of the simultaneous use of historical floristic data and a coeval topographic map to evaluate the main features of the past vegetation landscape and the potential of such data in change detection. Our study site was the Monte Fumaiolo area (northern Italy), where historical floristic data were independently recorded by two famous botanists during the 1930s. Past floristic data were then compared with current cartographic and vegetation data. Despite the fact that the two authors explored a comparable area, they significantly differed in the use of toponyms and in the distribution of floristic records among toponyms. This is reflected by a low floristic similarity at the toponym level between the two data sets. Nevertheless, the species classification into ecological categories allowed to highlight how the two authors recorded similar information on the landscape features. However, the use of these floristic data may have some flaws in landscape change detection.
DOI: 10.7284/121598
title: Multibeam Echosounder data collected during research cruise FK160407 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583258
title: Improving pest monitoring networks using a simulation-based approach to contribute to pesticide reduction

description: We have developed a theoretical model that belongs to the family of Dynamic Bayesian Networks in order to compare several PMNs performances. This model links the characteristics of a PMN to treatment decisions and the resulting pest dynamics. Using simulation and inference tools for graphical models, we derived the proportion of impacted fields, the number of pesticide treatments and the overall gross margins for three types of pest with contrasting levels of endocyclism. The presence of purely endocyclic pests at a given time increases the probability of reoccurrence. Conversely, slightly endocyclic pests have a low persistence. The simulation analysis considered ten scenarios: an expected margin-based strategy with a spatial resolution of four PMNs and two memory lengths (one year or eight years), as well as two extreme crop protection strategies (systematic treatments on all fields and systematic no treatment).<br><br>Improving pest monitoring networks using a simulation-based approach to contribute to pesticide reduction. Cros MJ, Aubertot JN, Gaba S, Reboud X, Sabbadin R, Peyrard N. Manuscrit submitted for publication (2020).Matlab code, numerical results provided on Figshare.
DOI: 10.7284/121600
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK160407 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583258.v2
title: Improving pest monitoring networks using a simulation-based approach to contribute to pesticide reduction

description: We have developed a theoretical model that belongs to the family of Dynamic Bayesian Networks in order to compare several PMNs performances. This model links the characteristics of a PMN to treatment decisions and the resulting pest dynamics. Using simulation and inference tools for graphical models, we derived the proportion of impacted fields, the number of pesticide treatments and the overall gross margins for three types of pest with contrasting levels of endocyclism. The presence of purely endocyclic pests at a given time increases the probability of reoccurrence. Conversely, slightly endocyclic pests have a low persistence. The simulation analysis considered ten scenarios: an expected margin-based strategy with a spatial resolution of four PMNs and two memory lengths (one year or eight years), as well as two extreme crop protection strategies (systematic treatments on all fields and systematic no treatment).<br><br>Improving pest monitoring networks using a simulation-based approach to contribute to pesticide reduction. Cros MJ, Aubertot JN, Gaba S, Reboud X, Sabbadin R, Peyrard N. Manuscrit submitted for publication (2020).Matlab code, numerical results provided on Figshare.
DOI: 10.6084/m9.figshare.7583261.v1
title: Taxonomy data file

description: Data used in Hacker Taxonomy analysis. Only variables that were used for this are present in the datafile. Well documented, self-explanatory
DOI: 10.6084/m9.figshare.7583258.v1
title: Improving Pest Monitoring Networks in order to reduce pesticide use in agriculture

description: We developed a generic simulation model that links a PMN precision to both treatment decisions and pest dynamics. We derived the amount of pesticide uses, the extension of pests and the global gross margin, for different families of pests. <br>Improving Pest Monitoring Networks in order to reduce pesticide use in agriculture. Cros MJ, Aubertot JN, Gaba S, Reboud X, Sabbadin R, Peyrard N. Manuscrit submitted for publication (2019).Matlab code, numerical results provided on Figshare.
DOI: 10.7284/121602
title: TSG (Thermosalinograph) data collected during research cruise FK160407 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583234
title: Refined_alignment_per_marker (targer_region/for_dataset1)

description: This zip package includes refined alignment of 94 markers containing sequence of target region (dataset1).
DOI: 10.7284/123907
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise FK160511 using a Hawaii UHDAS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583228
title: DoV + DoD in Artificial Intelligence Weak Signals Detection

description: Results from the research of DoV and DoD in Artificial Intelligence.
DOI: 10.6084/m9.figshare.7583243.v3
title: Data from Capo et al. (2019) Frontiers in Ecology and Evolution "How does environmental inter-annual variability shape aquatic microbial communities? A 40-year annual record of sedimentary DNA from a boreal lake (Nylandssjön, Sweden)"

description: The data corresponds to sequencing results obtained from a metabarcoding approach applied to sedimentary DNA from lake Nylandssjön (Sweden). DNA extractions and PCR amplifications were performed as described in the related manuscript.<br>The two fastq files (HCV3-R1 and HCV3-R2) correspond to the forward and reverse reads (respectively, not demultiplexed).A csv. file is provided given the name of each of the 80 molecular inventories and the forward and reverse tags sequences used for all of them. <br><br>More information about samples are provided in the Datasheet S1 from the manuscript Capo et al. (2019). <br>
DOI: 10.6084/m9.figshare.7583234.v1
title: Refined_alignment_per_marker (targer_region/for_dataset1)

description: This zip package includes refined alignment of 94 markers containing sequence of target region (dataset1).
DOI: 10.6084/m9.figshare.7583243
title: Data from Capo et al. (2019) Frontiers in Ecology and Evolution "How does environmental inter-annual variability shape aquatic microbial communities? A 40-year annual record of sedimentary DNA from a boreal lake (Nylandssjön, Sweden)"

description: The data corresponds to sequencing results obtained from a metabarcoding approach applied to sedimentary DNA from lake Nylandssjön (Sweden). DNA extractions and PCR amplifications were performed as described in the related manuscript.<br>The two fastq files (HCV3-R1 and HCV3-R2) correspond to the forward and reverse reads (respectively, not demultiplexed).A csv. file is provided given the name of each of the 80 molecular inventories and the forward and reverse tags sequences used for all of them. <br><br>More information about samples are provided in the Datasheet S1 from the manuscript Capo et al. (2019). <br>
DOI: 10.7284/123908
title: Fluorometer data collected during research cruise FK160511 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583234.v3
title: Refined_alignment_per_marker (targer_region/for_dataset1)

description: This zip package includes refined alignment of 94 markers containing sequence of target region (dataset1).
DOI: 10.6084/m9.figshare.7583228.v1
title: DoV + DoD in Artificial Intelligence Weak Signals Detection

description: Results from the research of DoV and DoD in Artificial Intelligence.
DOI: 10.6084/m9.figshare.7583234.v2
title: Refined_alignment_per_marker (targer_region/for_dataset1)

description: This zip package includes refined alignment of 94 markers containing sequence of target region (dataset1).
DOI: 10.7284/123906
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK160511 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583216
title: Refined_alignment_per_marker (exon_flanking/for_dataset2)

description: This zip package includes refined alignment of 94 markers containing sequence with exon flanking (dataset2).
DOI: 10.7284/123905
title: Gyrocompass data collected during research cruise FK160511 using a Raytheon STD 22 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583210
title: Concatenated_supermatrix (dataset1 &dataset2)

description: This zip package includes data matrices used in this study, containing dataset1 and dataset2.
DOI: 10.6084/m9.figshare.7583210.v1
title: Concatenated_supermatrix (dataset1 &dataset2)

description: This zip package includes data matrices used in this study, containing dataset1 and dataset2.
DOI: 10.7284/123911
title: INS (Inertial Navigation System) data collected during research cruise FK160511 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583216.v2
title: Refined_alignment_per_marker (exon_flanking/for_dataset2)

description: This zip package includes refined alignment of 94 markers containing sequence with exon flanking (dataset2).
DOI: 10.6084/m9.figshare.7583195
title: DataBase_1973_candidates.zip

description: The database containing a total of 1973 NPC marker candidates for Lepidotera phylogeny, including nucleotide and protein alignments.<br>
DOI: 10.6084/m9.figshare.7583195.v1
title: DataBase_1973_candidates.zip

description: The database containing a total of 1973 NPC marker candidates for Lepidotera phylogeny, including nucleotide and protein alignments.<br>
DOI: 10.7284/123909
title: Meteorological Station data collected during research cruise FK160511 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123910
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK160511 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123912
title: TSG (Thermosalinograph) data collected during research cruise FK160511 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583159
title: Additional file 1: of Maxillofacial morphological factors related to acceleration of maxillary growth attributed to facial mask treatment: a structural superimposition study

description: All datasets. (XLS 55 kb)
DOI: 10.7284/123275
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise FK160603 using a Hawaii UHDAS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583159.v1
title: Additional file 1: of Maxillofacial morphological factors related to acceleration of maxillary growth attributed to facial mask treatment: a structural superimposition study

description: All datasets. (XLS 55 kb)
DOI: 10.6084/m9.figshare.7583141
title: supplementary materials.docx

description: <b>supplementary materials for the artical of "</b><b>Peroxidasin promotes diabetic vascular endothelial dysfunction induced by advanced glycation end products via NOX2/HOCl/Akt/eNOS pathway ".</b><br>
DOI: 10.6084/m9.figshare.7583144
title: MSB-18-8636_DatasetEV8.xlsx

description: List of xenobiotic metabolism genes whose expression was upregulated in disease state DS2<br>
DOI: 10.6084/m9.figshare.7583147
title: MSB-18-8636_DatasetEV9.xlsx

description: Food consumption data from Open TG-GATEs<br>
DOI: 10.7284/123273
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK160603 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583144.v1
title: MSB-18-8636_DatasetEV8.xlsx

description: List of xenobiotic metabolism genes whose expression was upregulated in disease state DS2<br>
DOI: 10.6084/m9.figshare.7583147.v1
title: MSB-18-8636_DatasetEV9.xlsx

description: Food consumption data from Open TG-GATEs<br>
DOI: 10.6084/m9.figshare.7583135
title: MSB-18-8636_DatasetEV7.xlsx

description: Significantly up- and down-regulated pathways in disease states of rat livers in Open TG-GATEs<br>
DOI: 10.7284/123274
title: Expendable Probe data collected during research cruise FK160603 using a Turo Quoll instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583135.v1
title: MSB-18-8636_DatasetEV7.xlsx

description: Significantly up- and down-regulated pathways in disease states of rat livers in Open TG-GATEs<br>
DOI: 10.6084/m9.figshare.7583117
title: MSB-18-8636_DatasetEV5.zip

description: RMA-normalized liver transcriptome data from Open TG-GATEs<br>
DOI: 10.7284/123277
title: Fluorometer data collected during research cruise FK160603 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583114
title: MSB-18-8636_DatasetEV4.xlsx

description: Disease States and corresponding treatment conditions<br>
DOI: 10.6084/m9.figshare.7583117.v1
title: MSB-18-8636_DatasetEV5.zip

description: Liver transcriptome in Open TG-GATEs<br>
DOI: 10.6084/m9.figshare.7583111
title: MSB-18-8636_DatasetEV3.xlsx

description: Liver and Kidney histopathology<br>
DOI: 10.6084/m9.figshare.7583114.v1
title: MSB-18-8636_DatasetEV4.xlsx

description: Disease States and corresponding treatment conditions<br>
DOI: 10.7284/123272
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK160603 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583096
title: MSB-18-8636_DatasetEV2.xlsx

description: Normalized physiology dataset from Open TG-GATEs.<br>
DOI: 10.6084/m9.figshare.7583111.v1
title: MSB-18-8636_DatasetEV3.xlsx

description: Liver and Kidney histopathology<br>
DOI: 10.6084/m9.figshare.7583096.v1
title: MSB-18-8636_DatasetEV2

description: Normalized physiology dataset from Open TG-GATEs.<br>
DOI: 10.7284/123271
title: Gyrocompass data collected during research cruise FK160603 using a Raytheon STD 22 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123280
title: INS (Inertial Navigation System) data collected during research cruise FK160603 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7583084
title: Diastereoselective synthesis of diverse 3,2′-pyrrolidinyl bispirooxindoles via 1,3-dipolar cycloaddition reactions of azomethine ylides with exocyclic α,β-unsaturated ketones and <i>in silico</i> studies for prediction of bioactivity

description: A three-component highly regio- and diastereoselective 1,3-dipolar cycloaddition reaction between isatin, a series of primary amino acids (10 nos), and exocyclic α,β-unsaturated ketones was developed towards the synthesis of a small library of bispirooxindole (20 nos) at ambient temperature. The developed reaction afforded highly substituted 3,2′-pyrrolidine-bispirooxindole with two vicinal spiro-quaternary and four contiguous stereocenters from the cheap and abundant starting materials. The products were obtained with good to excellent yields (50-95%) and as a single diastereoisomer in the majority of the cases. Primary amino acids were served as amine component for the <i>in-situ</i> generation of azomethine ylides from isatin. Molecular docking studies were carried out to explore the synthesized bispirooxindoles as inhibitors of the epidermal growth factor receptor (EGFR). Two compounds exhibited excellent binding affinity towards EGFR receptor.