cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9697949.v1
title: Additional file 7: of Distinct signatures of lung cancer types: aberrant mucin O-glycosylation and compromised immune response

description: Table S3 Survival analysis. The table contains all the data from the cox regression on the candidate genes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9697943.v1
title: Additional file 6: of Distinct signatures of lung cancer types: aberrant mucin O-glycosylation and compromised immune response

description: Table S2 Integrative annotation for dual role genes. A curation from available datasets of dual role genes. (TXT 2 kb)
DOI: 10.6084/m9.figshare.9697730
title: Additional file 2: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S2. A dataset of experimentally observed Golgi proteins. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.9697736
title: Additional file 3: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S3. A dataset of extra-alkaline proteins in theÂ human proteome. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.9697730.v1
title: Additional file 2: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S2. A dataset of experimentally observed Golgi proteins. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.9697736.v1
title: Additional file 3: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S3. A dataset of extra-alkaline proteins in theÂ human proteome. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.9697721
title: MOESM4 of A differential transcriptional profile by Culex quinquefasciatus larvae resistant to Lysinibacillus sphaericus IAB59 highlights genes and pathways associated with the resistance phenotype

description: Additional file 4: Table S3. Description of STRING clusters found for downregulated and upregulated genes of Culex quinquefasciatus larvae from a Lysinibacillus sphaericus resistant colony (RIAB59) compared to a susceptible colony.
DOI: 10.6084/m9.figshare.9697724
title: Additional file 1: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S1. A dataset of experimentally observed lysosomal proteins. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.9697721.v1
title: MOESM4 of A differential transcriptional profile by Culex quinquefasciatus larvae resistant to Lysinibacillus sphaericus IAB59 highlights genes and pathways associated with the resistance phenotype

description: Additional file 4: Table S3. Description of STRING clusters found for downregulated and upregulated genes of Culex quinquefasciatus larvae from a Lysinibacillus sphaericus resistant colony (RIAB59) compared to a susceptible colony.
DOI: 10.6084/m9.figshare.9697724.v1
title: Additional file 1: of Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

description: Table S1. A dataset of experimentally observed lysosomal proteins. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.9697700
title: MOESM1 of A differential transcriptional profile by Culex quinquefasciatus larvae resistant to Lysinibacillus sphaericus IAB59 highlights genes and pathways associated with the resistance phenotype

description: Additional file 1: Table S1. Differentially expressed genes of Culex quinquefasciatus larvae from a Lysinibacillus sphaericus resistant colony (RIAB59) compared to a susceptible colony.
DOI: 10.6084/m9.figshare.9697700.v1
title: MOESM1 of A differential transcriptional profile by Culex quinquefasciatus larvae resistant to Lysinibacillus sphaericus IAB59 highlights genes and pathways associated with the resistance phenotype

description: Additional file 1: Table S1. Differentially expressed genes of Culex quinquefasciatus larvae from a Lysinibacillus sphaericus resistant colony (RIAB59) compared to a susceptible colony.
DOI: 10.6084/m9.figshare.9697655
title: Additional file 3: of Efficacy and potential use of novel sustained release fillers as intracanal medicaments against Enterococcus faecalis biofilm in vitro

description: Supporting data. The file contains data to support Figs. 3, 4 and 5. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.9697655.v1
title: Additional file 3: of Efficacy and potential use of novel sustained release fillers as intracanal medicaments against Enterococcus faecalis biofilm in vitro

description: Supporting data. The file contains data to support Figs. 3, 4 and 5. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.9697643
title: Additional file 8: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Unclassified Virus Sequences. Sequence assemblies for 39 non-redundant contigs &gt;â 500 nucleotides, unclassified by sequence similarity to known viruses. The small RNA profile matched a pattern of classic RNAi processing of viral replication intermediates, suggesting they are undescribed viruses. In fasta text sequence file format. (FASTA 38 kb)
DOI: 10.6084/m9.figshare.9697637
title: Additional file 4: of VOLARE: visual analysis of disease-associated microbiome-immune system interplay

description: Underlying data, case study 2. (CSV 25 kb)
DOI: 10.6084/m9.figshare.9697640
title: Additional file 7: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Classified Virus Sequences. Sequence assemblies and annotations for the final 115 novel virus contigs non-redundant contigs &gt;â 500 nucleotides, classified by sequence similarity to known viruses. In EMBL flat sequence file format. (ZIP 208 kb)
DOI: 10.15468/e7jp56
title: Nonmarine Ostracoda (Crustacea) from Jeju Island, South Korea, including descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smith, Robin James, Lee, Jimin, Chang, Cheon Young (2014): Nonmarine Ostracoda (Crustacea) from Jeju Island, South Korea, including descriptions of two new species. Journal of Natural History 49 (1): 37-76, DOI: 10.1080/00222933.2014.946110
DOI: 10.6084/m9.figshare.9697634
title: Additional file 6: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S4. Anopheles coluzzii candidate piRNA genes differentially represented in small RNA sequence of ONNV infected and uninfected controls. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9697637.v1
title: Additional file 4: of VOLARE: visual analysis of disease-associated microbiome-immune system interplay

description: Underlying data, case study 2. (CSV 25 kb)
DOI: 10.6084/m9.figshare.9697643.v1
title: Additional file 8: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Unclassified Virus Sequences. Sequence assemblies for 39 non-redundant contigs &gt;â 500 nucleotides, unclassified by sequence similarity to known viruses. The small RNA profile matched a pattern of classic RNAi processing of viral replication intermediates, suggesting they are undescribed viruses. In fasta text sequence file format. (FASTA 38 kb)
DOI: 10.6084/m9.figshare.9697640.v1
title: Additional file 7: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Classified Virus Sequences. Sequence assemblies and annotations for the final 115 novel virus contigs non-redundant contigs &gt;â 500 nucleotides, classified by sequence similarity to known viruses. In EMBL flat sequence file format. (ZIP 208 kb)
DOI: 10.6084/m9.figshare.9697634.v1
title: Additional file 6: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S4. Anopheles coluzzii candidate piRNA genes differentially represented in small RNA sequence of ONNV infected and uninfected controls. (XLSX 18 kb)
DOI: 10.15468/jatx34
title: Littoral caprellids (Crustacea: Amphipoda) from the Mexican Central Pacific coast, with the description of four new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sánchez-Moyano, J. E., García-Asencio, I., Guerra-García, J. M. (2014): Littoral caprellids (Crustacea: Amphipoda) from the Mexican Central Pacific coast, with the description of four new species. Journal of Natural History 49 (1): 77-127, DOI: 10.1080/00222933.2014.937366
DOI: 10.6084/m9.figshare.9697610
title: Additional file 3: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S3. Predicted open reading frames, peptide annotation and functional status of 115 assembled virus contigs displaying sequence similarity to known virus families. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.9697604
title: Additional file 2: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S2. List of 115 assembled virus contigs displaying sequence similarity to known virus families. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9697610.v1
title: Additional file 3: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S3. Predicted open reading frames, peptide annotation and functional status of 115 assembled virus contigs displaying sequence similarity to known virus families. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.9697595
title: Additional file 4: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S3. The list of diurnal H3K4me3 and H3K9ac peaks with coverage levels at all time points. (XLSX 2978 kb)
DOI: 10.6084/m9.figshare.9697598
title: Additional file 1: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S1. Anopheles mosquito taxa represented in the collections from Senegal and Cambodia, as detected by comparison to Anopheles sequences from the Barcode of Life COI-5P database. Data corresponds to pie charts of Anopheles taxa by country and sample pool depicted in Fig.Â 1. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.9697604.v1
title: Additional file 2: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S2. List of 115 assembled virus contigs displaying sequence similarity to known virus families. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9697589
title: Additional file 3: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S2. List of all identified H3K4me3 and H3K9ac peaks with coverage levels at all time points. (XLSX 11750 kb)
DOI: 10.6084/m9.figshare.9697595.v1
title: Additional file 4: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S3. The list of diurnal H3K4me3 and H3K9ac peaks with coverage levels at all time points. (XLSX 2978 kb)
DOI: 10.6084/m9.figshare.9697598.v1
title: Additional file 1: of De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

description: Table S1. Anopheles mosquito taxa represented in the collections from Senegal and Cambodia, as detected by comparison to Anopheles sequences from the Barcode of Life COI-5P database. Data corresponds to pie charts of Anopheles taxa by country and sample pool depicted in Fig.Â 1. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.9697589.v1
title: Additional file 3: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S2. List of all identified H3K4me3 and H3K9ac peaks with coverage levels at all time points. (XLSX 11750 kb)
DOI: 10.6084/m9.figshare.9697580
title: Additional file 2: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S1. List of peaks with different H3K4me3 enrichment between WT and cca1 lhy mutant. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.9697580.v1
title: Additional file 2: of Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis

description: Table S1. List of peaks with different H3K4me3 enrichment between WT and cca1 lhy mutant. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.9697361
title: Dataset: Seascape patterning shapes the distribution of temperate reef fish

description: These data are the fish assemblage recorded using unbaited remote videos on shallow water reefs (~2m) and the surrounding seascape patterns in Jervis Bay, NSW, Australia.
DOI: 10.6084/m9.figshare.9697361.v1
title: Dataset: Seascape patterning shapes the distribution of temperate reef fish

description: These data are the fish assemblage recorded using unbaited remote videos on shallow water reefs (~2m) and the surrounding seascape patterns in Jervis Bay, NSW, Australia.
DOI: 10.6084/m9.figshare.9697346
title: ReadMe.txt

description: Description of compressed files Cell_Data_phase_1 (2, 3)
DOI: 10.6084/m9.figshare.9697337
title: Diseases, conditions, and drugs associated with cicatricial ectropion

description: ABSTRACT Cicatricial ectropion may be a consequence of certain systemic diseases as well as the result of drug use. Our goal here was to research the different causes of this condition as reported in the literature, including more recently suspected etiologies. A detailed PubMed literature search indicated many different etiologies were associated with cicatricial ectropion development, from severe cases of systemic diseases, such as ichthyosis and lupus erythematosus, to reversible scenarios secondary to anti-glaucomatous drug use. More recently reported connections include periorbital necrotizing fasciitis, frontal osteomyelitis, and antineoplastic agents. Indeed, cicatricial ectropion may be highly symptomatic; being able to determine its real etiology is imperative to managing patients properly. In this investigation, we felt that an explicitly multidisciplinary approach was essential, especially for cases associated with systemic conditions.
DOI: 10.6084/m9.figshare.9697346.v1
title: ReadMe.txt

description: Description of compressed files Cell_Data_phase_1 (2, 3)
DOI: 10.6084/m9.figshare.9697337.v1
title: Diseases, conditions, and drugs associated with cicatricial ectropion

description: ABSTRACT Cicatricial ectropion may be a consequence of certain systemic diseases as well as the result of drug use. Our goal here was to research the different causes of this condition as reported in the literature, including more recently suspected etiologies. A detailed PubMed literature search indicated many different etiologies were associated with cicatricial ectropion development, from severe cases of systemic diseases, such as ichthyosis and lupus erythematosus, to reversible scenarios secondary to anti-glaucomatous drug use. More recently reported connections include periorbital necrotizing fasciitis, frontal osteomyelitis, and antineoplastic agents. Indeed, cicatricial ectropion may be highly symptomatic; being able to determine its real etiology is imperative to managing patients properly. In this investigation, we felt that an explicitly multidisciplinary approach was essential, especially for cases associated with systemic conditions.
DOI: 10.6084/m9.figshare.9697328
title: Microstructural Adjustments and Tensile Properties of a Hot-Forged Ti−22Al−23Nb−3V−Y Alloy

description: Microstructures and tensile properties of a hot forged Ti−22Al−23Nb−3V−Y alloy were investigated systematically. Different heat treatments were performed to adjust the wrought microstructure to optimize tensile properties. It was found that features of O phase precipitates and its volume fraction was rather sensitive to the cooling rate after the solution. The volume fraction of primary lamellar O phase increased from 19.65% by solution treatment to 36.30% by annealing with furnace cooling and up to 100% by annealing with a controlled slow cooling rate of 1 ºC/min. Meanwhile, the width of the lamellar secondary O phase increased. Fine acicular second O phase contributed to strengthening, while the coarsen primary ones were favorable to the ductility. The solution & aging treated microstructure exhibited a good tensile strength of 1100 MPa and an acceptable ductility of 8% at room temperature, by contrast, annealing at 950 ºC with a controlled slow cooling rate gave rise to a higher elongation of 12%, but a relatively low strength of 960 MPa.
DOI: 10.6084/m9.figshare.9697322
title: Diversity of Biomphalaria spp. freshwater snails and associated mollusks in areas with schistosomiasis risk, using molecular and spatial analysis tools

description: Abstract: The Middle Paranapanema River region of São Paulo, Brazil is home to significant diversity of Biomphalaria species and is very vulnerable to health and environmental impacts such as schistosomiasis. This study updates freshwater malacological surveys for ecosystems in one portion of the Middle Paranapanema River Basin, with emphasis on the genus Biomphalaria. Snails were collected from 114 distinct bodies of water between 2015 and 2018. Biomphalaria specimens were identified according to morphological and molecular characteristics, while animals in other genera (Drepanotrema, Lymnaea, Melanoides, Physa and Pomacea) were identified solely according to shell characteristics. A geographic information system was used to update intermediate host colonization sites and consequently assist in identifying probable hotspots for intermediate hosts of schistosomiasis. The sequences of the COI gene relating to the DNA barcode stretch were tested for similarity against sequences found in GenBank, for monophyly through Maximum Likelihood phylogenetic inference, and analyzed in ABDG, bPTP and GMYC for the delimitation of putative species. Of the 10,722 snails collected, 86.7% were in the Planorbidae family (75.5% Biomphalaria and 11.2% Drepanotrema) and 13.3% were other non-Planorbidae species (Lymnaea, Melanoides, Physa and Pomacea). The taxonomic COI reference sequences in the NCBI nucleotide database used for DNA sequence comparison, and phylogenetic analysis used to test the monophyly of the groups, resulted in more reliable taxonomic units than delimitation of the COI sequences in MOTUs using statistical taxonomic models. Analysis of the species distribution shows that B. glabrata and B. tenagophila are heterogeneously distributed in the study area. B. glabrata colonizes only five water bodies, in the study area, most of them in Ourinhos, while B. tenagophila predominates in water bodies in Ipaussu. Contrasting with this, B. straminea, B. occidentalis and B. peregrina are evenly distributed throughout the study area.
DOI: 10.6084/m9.figshare.9697319
title: Relationship between erythrocyte sedimentation rate and choroidal and retinal thickness in Behçet's disease

description: ABSTRACT Purpose: To compare retinal and choroidal thickness in patients with Behçet's disease with and without ocular involvement as well as to evaluate the correlation between erythrocyte sedimentation rate and choroidal thickness among patients with Behçet's disease. Methods: This was a prospective interventional study investigating erythrocyte sedimentation as well as choroidal and retinal thickness among patients with Behçet's disease. Patients who were diagnosed based on The International Criteria for Behçet's Disease with (Group A) or without (Group B) ocular involvement and a matched control group (Group C) participated in the study. Optical coherence tomography measurements and blood tests were performed on the same day. Retinal and choroidal thickness were measured using spectral-domain optical coherence tomography (Spectralis, Heidelberg Engineering, Heidelberg, Germany), and central macular thickness, central subfoveal choroidal thickness, and retinal nerve fiber layer thickness were measured using optical coherence tomography. Results: Average erythrocyte sedimentation values were 9.89 mm/h in Group A, 16.21 mm/h in Group B, and 3.89 mm/h in Group C; average central subfoveal choroidal thickness values were 350.66, 331.74, and 325.95 mm, respectively. Average central macular thickness and retinal nerve fiber layer thickness values of patients in Groups A, B and C were 226.39 and 225.97mm; 234.11 and 92.00 mm; and 97.58 and 99.84 mm, respectively. No significant difference was seen between Group A and B patients in central subfoveal choroidal thickness, central macular thickness, or retinal nerve fiber layer thickness values. Central macular thickness was statistically significantly thinner in Groups A and B than in Group C (p=0.016). Group A had thinning in the nasal quadrant of the retinal and general retinal nerve fiber layers when compared with those in Group C (p=0.010 and 0.041, respectively). A connection could not be established between the erythrocyte sedimentation, central subfoveal choroidal thickness, central macular thickness, and retinal nerve fiber layer thickness in the patients with Behçet's disease. Conclusion: The erythrocyte sedimentation rate is typically used to test for activation of Behçet's disease and assess treatment response. In our study, we could not establish a connection between the erythrocyte sedimentation rate and central subfoveal choroidal thickness, central macular thickness, and retinal nerve fiber layer thickness in patients with systematically active Behçet's disease without ocular involvement.
DOI: 10.6084/m9.figshare.9697316
title: Quantitative evaluation of brain volume among elderly individuals in São Paulo, Brazil: a population-based study

description: Abstract Objective: To perform a quantitative analysis of the brain volume of elderly individuals in a population-based sample. Materials and Methods: This was a radiological assessment and voxel-based quantitative analysis, with surface alignment, of 525 magnetic resonance imaging scans of individuals between 60 and 103 years of age who participated in the Saúde, Bem-estar e Envelhecimento (Health, Well-being, and Aging) study in the city of São Paulo, Brazil. Results: We noted a median rate of reduction in total brain volume of 2.4% per decade after 60 years of age. Gray and white matter both showed volume reductions with age. The total brain volume/intracranial brain volume ratio differed between males and females. Conclusion: We have corroborated the findings of studies conducted in the United States and Europe. The total brain volume/intracranial brain volume ratio is higher in men, representing a potential bias for the conventional radiological assessment of atrophy, which is typically based on the evaluation of the cerebrospinal fluid spaces.