cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21500811
title: Additional file 6 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 6: Table S5. Relative abundance of families detected through 16S rRNA gene sequencing using fecal DNA.
DOI: 10.6084/m9.figshare.21500811.v1
title: Additional file 6 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 6: Table S5. Relative abundance of families detected through 16S rRNA gene sequencing using fecal DNA.
DOI: 10.6084/m9.figshare.21500814
title: Additional file 7 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 7: Table S6. Relative abundance of genera detected through 16S rRNA gene sequencing using fecal DNA.
DOI: 10.6084/m9.figshare.21500814.v1
title: Additional file 7 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 7: Table S6. Relative abundance of genera detected through 16S rRNA gene sequencing using fecal DNA.
DOI: 10.6084/m9.figshare.25140752
title: <b>Strong interactions between solitons and background light in Brillouin-Kerr microcombs</b>

description: This is data set of paper: "<b>Strong interactions between solitons and background light in Brillouin-Kerr microcombs</b>"
DOI: 10.6084/m9.figshare.21500820
title: Additional file 9 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 9: Table S7. Relative abundance of bacterial species determined through shotgun sequencing.
DOI: 10.6084/m9.figshare.21500820.v1
title: Additional file 9 of Deficiency of exchange protein directly activated by cAMP (EPAC)-1 in mice augments glucose intolerance, inflammation, and gut dysbiosis associated with Western diet

description: Additional file 9: Table S7. Relative abundance of bacterial species determined through shotgun sequencing.
DOI: 10.6084/m9.figshare.21500772
title: Additional file 1 of Integrated proteomic and metabolomic modules identified as biomarkers of mortality in the Atherosclerosis Risk in Communities study and the African American Study of Kidney Disease and Hypertension

description: Additional file 1. Additional materials including the module memberships and annotations of proteins/metabolites; the cross-sectional associations of modules and participant characteristics; the mortality associations of modules; and network representations of module 42 and 98.
DOI: 10.6084/m9.figshare.21500772.v1
title: Additional file 1 of Integrated proteomic and metabolomic modules identified as biomarkers of mortality in the Atherosclerosis Risk in Communities study and the African American Study of Kidney Disease and Hypertension

description: Additional file 1. Additional materials including the module memberships and annotations of proteins/metabolites; the cross-sectional associations of modules and participant characteristics; the mortality associations of modules; and network representations of module 42 and 98.
DOI: 10.6084/m9.figshare.7869371
title: Responses of soil invertebrates to different forest types in the Changbai Mountains of China

description: Soil invertebrates can potentially respond to variation of soil and vegetation in a timely manner, yet the relationships between soil invertebrates to the forest ecosystem remain a matter of debate. In order to better understand the responses of soil invertebrates to different forest types in the temperate forest ecosystem, a total of 450 soil invertebrates’ samples were collected from 5 forest types, namely primeval coniferous broad-leaved mixed forests, secondary coniferous broad-leaved mixed forests, secondary broad-leaved forests, secondary <i>Quercus mongolica</i> forests, and secondary shrub forests in spring, summer, and autumn. The results revealed that the distribution patterns of soil invertebrates differed among the forests, and the taxonomic compositions of soil invertebrates slightly varied among the different forest types in the Changbai Mountains, yet high similarities exist in the soil invertebrates’ communities. Seasonal variation in the abundance and richness of soil invertebrates was observed, though no significant differences were detected among the seasons. Hypogastruridae were more suitable for the forest types with relatively higher levels of canopy cover. Furthermore, soil invertebrates responded mostly to soil temperature and moisture (RV = 0.44, <i>p </i>= 0.02), available nutrients (RV = 0.42, <i>p </i>= 0.04), and minerals (RV = 0.39, <i>p </i>= 0.04). Overall, the findings of this study provide evidence that different forest types affect the distribution patterns of soil invertebrates, but the responses of soil invertebrates to forest types differed between their taxa.
DOI: 10.6084/m9.figshare.7869371.v1
title: Responses of soil invertebrates to different forest types in the Changbai Mountains of China

description: Soil invertebrates can potentially respond to variation of soil and vegetation in a timely manner, yet the relationships between soil invertebrates to the forest ecosystem remain a matter of debate. In order to better understand the responses of soil invertebrates to different forest types in the temperate forest ecosystem, a total of 450 soil invertebrates’ samples were collected from 5 forest types, namely primeval coniferous broad-leaved mixed forests, secondary coniferous broad-leaved mixed forests, secondary broad-leaved forests, secondary <i>Quercus mongolica</i> forests, and secondary shrub forests in spring, summer, and autumn. The results revealed that the distribution patterns of soil invertebrates differed among the forests, and the taxonomic compositions of soil invertebrates slightly varied among the different forest types in the Changbai Mountains, yet high similarities exist in the soil invertebrates’ communities. Seasonal variation in the abundance and richness of soil invertebrates was observed, though no significant differences were detected among the seasons. Hypogastruridae were more suitable for the forest types with relatively higher levels of canopy cover. Furthermore, soil invertebrates responded mostly to soil temperature and moisture (RV = 0.44, <i>p </i>= 0.02), available nutrients (RV = 0.42, <i>p </i>= 0.04), and minerals (RV = 0.39, <i>p </i>= 0.04). Overall, the findings of this study provide evidence that different forest types affect the distribution patterns of soil invertebrates, but the responses of soil invertebrates to forest types differed between their taxa.
DOI: 10.6084/m9.figshare.17306568
title: Characterization of fructose-1, 6-bisphosphate aldolase in <i>Dermacentor silvarum</i>

description: Fructose-1, 6-bisphosphate aldolase (FBA) catalyses the conversion of fructose-1, 6-diphosphatein to dihydroxyacetone phosphate and glyceraldehyde-3-phosphate. It is an important enzyme for both glycolysis and gluconeogenesis in parasites. In this study, we cloned the open reading frame of the FBA gene from <i>Dermacentor silvarum</i>, which was 1095 bp and encoded a protein of 364 amino acids. The deduced amino acid sequence of <i>D. silvarum</i> FBA had high similarity with FBA homologues from other ticks. Phylogenetic analysis of FBA showed that <i>D. silvarum</i> and <i>Amblyomma variegatum</i> belonged to the same clade. The recombinant FBA of <i>D. silvarum</i> (rDsFBA) was expressed in <i>Escherichia coli</i> and the molecular weight was about 62 kDa, which was abundantly expressed in the supernatant of <i>E. coli</i> following induction by 0.5 mM IPTG for 8 h at 25°C. The activity of rDsFBA was characterized using a coupled enzymatic assay. The rDsFBA had a Km of 21.22 μM and a Vmax of 1.57 U/mg. Western blot analysis demonstrated that rDsFBA could be recognized by rabbit anti<i>-D. silvarum</i> polyclonal antibodies, suggesting it probably owned immunogenicity. The data reported here contribute to future research into the role of FBA in <i>D. silvarum</i>, and provides a new candidate antigen for controlling tick.
DOI: 10.6084/m9.figshare.17306568.v1
title: Characterization of fructose-1, 6-bisphosphate aldolase in <i>Dermacentor silvarum</i>

description: Fructose-1, 6-bisphosphate aldolase (FBA) catalyses the conversion of fructose-1, 6-diphosphatein to dihydroxyacetone phosphate and glyceraldehyde-3-phosphate. It is an important enzyme for both glycolysis and gluconeogenesis in parasites. In this study, we cloned the open reading frame of the FBA gene from <i>Dermacentor silvarum</i>, which was 1095 bp and encoded a protein of 364 amino acids. The deduced amino acid sequence of <i>D. silvarum</i> FBA had high similarity with FBA homologues from other ticks. Phylogenetic analysis of FBA showed that <i>D. silvarum</i> and <i>Amblyomma variegatum</i> belonged to the same clade. The recombinant FBA of <i>D. silvarum</i> (rDsFBA) was expressed in <i>Escherichia coli</i> and the molecular weight was about 62 kDa, which was abundantly expressed in the supernatant of <i>E. coli</i> following induction by 0.5 mM IPTG for 8 h at 25°C. The activity of rDsFBA was characterized using a coupled enzymatic assay. The rDsFBA had a Km of 21.22 μM and a Vmax of 1.57 U/mg. Western blot analysis demonstrated that rDsFBA could be recognized by rabbit anti<i>-D. silvarum</i> polyclonal antibodies, suggesting it probably owned immunogenicity. The data reported here contribute to future research into the role of FBA in <i>D. silvarum</i>, and provides a new candidate antigen for controlling tick.
DOI: 10.6084/m9.figshare.16782400
title: Online supplemental material to: Impact of abnormal body mass index on outcomes of stroke patients receiving intravenous thrombolysis

description: Supplementary materials to Impact of abnormal body mass index on outcomes of stroke patients receiving intravenous thrombolysis. Appendix S1 shows the detailed methods of the meta-analysis part.
DOI: 10.6084/m9.figshare.22549609
title: Enrichemnt of gene families with expanion and contraction of M.usitatus genome

description: Enrichemnt of gene families with expanion and contraction of M.usitatus genome
DOI: 10.6084/m9.figshare.21501046
title: Comparison of the caecal microbial community structure and physiological indicators of healthy and infection <i>Eimeria tenella</i> chickens during peak of oocyst shedding

description: <i>Eimeria tenella</i> (<i>E. tenella</i>), an important intestinal parasite of chicken caeca, causes coccidiosis and brings large economic losses to the poultry industry annually. Gut microorganismal alterations directly affect the health of the body. To understand how <i>E. tenella</i> affects its host, we analysed the changes in caecal microbial diversity and the physiological and morphological changes during the peak of oocyst shedding. Infected and healthy chickens differed significantly in caecal pathology and blood indicators. At the genus level, the abundances of <i>Faecalibacterium</i>, <i>Clostridium</i>, <i>Lachnoclostridium</i>, <i>Gemmiger</i>, <i>Flavonifractor</i>, <i>Pseudoflavonifractor</i> and <i>Oscillibacter</i> were significantly decreased in the infected samples, whereas <i>Escherichia</i>, <i>Nocardia</i> and <i>Chlamydia</i> were significantly increased. Functional gene pathways related to replication, recombination and repair, and transcription were significantly decreased, and functional genes related to metabolism were highly significantly reduced in the infected samples. Furthermore, in the infected samples, <i>E. tenella</i> reduced the haemoglobin levels and red blood cell counts, greatly reduced the beneficial bacteria and increased the potentially pathogenic bacteria. This study provides a research basis for further understanding the pathogenic mechanisms of <i>E. tenella</i> and provides insight for potential new drug development. <b>RESEARCH HIGHLIGHTS</b>First simultaneous description of caecal microbiota and physiological indicators during <i>E. tenella</i> infection.Metagenomics used to explore functional properties of chicken caecal microbiota during <i>E. tenella</i> infection.Caecal microbial compositions and functional genes altered significantly after infection.Blood indicators and caecal morphology were significantly altered in the infected group. First simultaneous description of caecal microbiota and physiological indicators during <i>E. tenella</i> infection. Metagenomics used to explore functional properties of chicken caecal microbiota during <i>E. tenella</i> infection. Caecal microbial compositions and functional genes altered significantly after infection. Blood indicators and caecal morphology were significantly altered in the infected group.
DOI: 10.6084/m9.figshare.21501046.v1
title: Comparison of the caecal microbial community structure and physiological indicators of healthy and infection <i>Eimeria tenella</i> chickens during peak of oocyst shedding

description: <i>Eimeria tenella</i> (<i>E. tenella</i>), an important intestinal parasite of chicken caeca, causes coccidiosis and brings large economic losses to the poultry industry annually. Gut microorganismal alterations directly affect the health of the body. To understand how <i>E. tenella</i> affects its host, we analysed the changes in caecal microbial diversity and the physiological and morphological changes during the peak of oocyst shedding. Infected and healthy chickens differed significantly in caecal pathology and blood indicators. At the genus level, the abundances of <i>Faecalibacterium</i>, <i>Clostridium</i>, <i>Lachnoclostridium</i>, <i>Gemmiger</i>, <i>Flavonifractor</i>, <i>Pseudoflavonifractor</i> and <i>Oscillibacter</i> were significantly decreased in the infected samples, whereas <i>Escherichia</i>, <i>Nocardia</i> and <i>Chlamydia</i> were significantly increased. Functional gene pathways related to replication, recombination and repair, and transcription were significantly decreased, and functional genes related to metabolism were highly significantly reduced in the infected samples. Furthermore, in the infected samples, <i>E. tenella</i> reduced the haemoglobin levels and red blood cell counts, greatly reduced the beneficial bacteria and increased the potentially pathogenic bacteria. This study provides a research basis for further understanding the pathogenic mechanisms of <i>E. tenella</i> and provides insight for potential new drug development. <b>RESEARCH HIGHLIGHTS</b>First simultaneous description of caecal microbiota and physiological indicators during <i>E. tenella</i> infection.Metagenomics used to explore functional properties of chicken caecal microbiota during <i>E. tenella</i> infection.Caecal microbial compositions and functional genes altered significantly after infection.Blood indicators and caecal morphology were significantly altered in the infected group. First simultaneous description of caecal microbiota and physiological indicators during <i>E. tenella</i> infection. Metagenomics used to explore functional properties of chicken caecal microbiota during <i>E. tenella</i> infection. Caecal microbial compositions and functional genes altered significantly after infection. Blood indicators and caecal morphology were significantly altered in the infected group.
DOI: 10.6084/m9.figshare.17306813
title: optical_const.xlsx

description: n and k values of GST, Sb2S3, and Sb2Se3
DOI: 10.6084/m9.figshare.7345358
title: MOESM1 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 1. The relative abundance of microbial communities at the phyla level.
DOI: 10.6084/m9.figshare.7345358.v1
title: MOESM1 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 1. The relative abundance of microbial communities at the phyla level.
DOI: 10.6084/m9.figshare.7345364
title: MOESM2 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 2. The relative abundance of microbial communities at the genus level.
DOI: 10.6084/m9.figshare.7345364.v1
title: MOESM2 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 2. The relative abundance of microbial communities at the genus level.
DOI: 10.6084/m9.figshare.7345370
title: MOESM3 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 3. KEGG basedÂ triplex hierarchical metabolic pathway composition statistic table.
DOI: 10.6084/m9.figshare.7345370.v1
title: MOESM3 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 3. KEGG basedÂ triplex hierarchical metabolic pathway composition statistic table.
DOI: 10.6084/m9.figshare.7345379
title: MOESM4 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 4. KEGGÂ based functional enzymeÂ encoding gene composition statistic table.
DOI: 10.6084/m9.figshare.7345379.v1
title: MOESM4 of Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis

description: Additional file 4. KEGGÂ based functional enzymeÂ encoding gene composition statistic table.
DOI: 10.6084/m9.figshare.7345445
title: Additional file 1: of Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods

description: Identification of 724 DEGs. (XLS 134 kb)
DOI: 10.6084/m9.figshare.7345445.v1
title: Additional file 1: of Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods

description: Identification of 724 DEGs. (XLS 134 kb)
DOI: 10.6084/m9.figshare.7345466
title: Additional file 2: of Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods

description: Identification of 181 candidate genes with top 25% variance. (XLS 36 kb)
DOI: 10.6084/m9.figshare.7345466.v1
title: Additional file 2: of Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods

description: Identification of 181 candidate genes with top 25% variance. (XLS 36 kb)
DOI: 10.6084/m9.figshare.13636915.v1
title: Additional file 10 of SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

description: Additional file 10: Supplementary Table S9. Extent of outlier tiles.
DOI: 10.15468/dl.d4bkrg
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Triglyphus primus Loew, 1840",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 290 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085632-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p93jnx
title: Occurrence Download

description: A dataset containing 1478 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Stegobium paniceum (Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1478 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085633-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xckj7h
title: Occurrence Download

description: A dataset containing 7655 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus caroliniana (Mill.) Aiton"
 ]
}

 The dataset includes 7655 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085635-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f56787
title: Occurrence Download

description: A dataset containing 26429 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Helophilus trivittatus (Fabricius, 1805)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 26429 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085634-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhkvgf
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (eace4687-50e8-4f9a-829b-29ff8ff1fa8b, eac88d99-9f6c-4031-8fc4-8088f0e0dfe7, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Ceroxylon alpinum Bonpl. ex DC."
 ]
}

 The dataset includes 113 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085637-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mgrua
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Minthea rugicollis (Walker, 1858)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085636-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.