cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3084559.v1
title: proj_13ranmig.tsv.gz

description: These are Eurostat official data, downloaded through the Bulk Download option on 2016-02-21.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set contains1-year age structure of annual net migration for all European NUTS-2 regions and countries for the projected period 2013-2080. The base year for the projection is 2013. The data are also disaggregated by sex: female, male, and total.
DOI: 10.6084/m9.figshare.3084499
title: Variabilidad estacional de las crisis de asma, de bronquiolitis y de sibilancias aisladas.

description: Estudio descriptivo retrospectivo de la variabilidad estacional e interanual de los episodios de bronquiolitis, broncoespasmo y crisis de broncoespasmo durante 10 años.
DOI: 10.6084/m9.figshare.3084517
title: perforation.xls

description: colorectal perforation dataset for publication in BMC
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/j2nnel
title: GIS_err.tab

description: :unav
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/5nsue9
title: gate_meta.tab

description: :unav
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/axbwc1
title: GIS_D.tab

description: :unav
DOI: 10.6084/m9.figshare.3084418
title: demo_r_magec.tsv.gz

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-07-31.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes numbers of deaths in each 1-year age group for all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.
DOI: 10.6084/m9.figshare.3084421.v1
title: The impact of a breast cancer diagnosis on health-related quality of life. A prospective comparison among middle-aged to elderly women with and without breast cancer

description: <b>Background</b> The improved survival after breast cancer has prompted knowledge on the effect of a breast cancer diagnosis on health-related quality of life (HQoL). This study compared changes in HQoL among women from before to after breast cancer diagnosis with longitudinal changes among women who remained breast cancer-free. <b>Material and methods</b> The Danish Diet, Cancer and Health study included 57 053 cancer-free persons aged 50–64 years at baseline (1993–1997). We used data from first follow-up (1999–2002) and second follow-up (2010–2012) on HQoL [Medical Outcomes Survey, short form (SF-36)] obtained from 542 women aged 64–82 years with primary breast cancer (stages I–III) and a randomly matched sample of 729 women who remained breast cancer-free. Linear regression models were used to estimate the differences in changes in HQoL between women with and without breast cancer; the analyses were repeated with stratification according to age, comorbidity, partner support and time since diagnosis. <b>Results</b> Women with breast cancer reported significantly larger decreases in HQoL from before to after diagnosis than those who remained breast cancer-free (physical component summary, −2.0; 95% CI −2.8; −1.2, mental component summary, −1.5, 95% CI −2.3; −0.6). This association was significantly modified by comorbidity and time since diagnosis. <b>Conclusions</b> Women with breast cancer reported significantly larger HQoL declines than breast cancer-free women. Breast cancer diagnosis seems to have the greatest impact on HQoL closest to diagnosis and in women with comorbidity indicating that this group should be offered timely and appropriate follow-up care to prevent HQoL declines.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/zazdzg
title: region_err.tab

description: :unav
DOI: 10.6084/m9.figshare.3084394
title: demo_r_d2jan.tsv.gz

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-08-03.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes 1-year population structures of all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.<br>
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/ggp4lv
title: gate_D.tab

description: :unav
DOI: 10.6084/m9.figshare.3084403
title: Nanodrop vs Quant-iT concentrations for 644 M. tuberculosis genome extracts

description: This table compares the genomic DNA concentrations measured in-house by Nanodrop versus those measured by the BCGSC using Quant-iT for a set of 644 M. tuberculosis genomes from the BCCDC.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/dg3pxy
title: sector_D.tab

description: :unav
DOI: 10.6084/m9.figshare.3084418.v2
title: demo_r_magec.tsv.gz

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-07-31.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes numbers of deaths in each 1-year age group for all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/tqetqy
title: region_coverage.tab

description: :unav
DOI: 10.6084/m9.figshare.3084394.v2
title: demo_r_d2jan.tsv.gz

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-08-03.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes 1-year population structures of all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.<br>
DOI: 10.6084/m9.figshare.3084418.v1
title: demo_r_magec.tsv

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-07-31.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes numbers of deaths in each 1-year age group for all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.
DOI: 10.6084/m9.figshare.3084343
title: Strong decline in the consumption of invertebrates by Barn Owls from 1860 to 2012 in Europe

description: <b>Capsule</b> The analysis of 616 papers about the diet of the European Barn Owl <i>Tyto alba</i> showed that 9678 invertebrates were captured out of 3.13 million prey items (0.31%). The consumption of invertebrates strongly decreased between 1860 and 2012. This further demonstrates that the Barn Owl diet changed to a large extent during the last 150 years.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/la7mzk
title: GIS_err.tab

description: :unav
DOI: 10.6084/m9.figshare.3084394.v1
title: demo_r_d2jan.tsv

description: These are Eurostat official data, downloaded through the Bulk Download option on 2015-08-03.<br>I re-publish the data here for reproducibility of the analyses based on these data.<br><br>This data set includes 1-year population structures of all European NUTS-2, NUTS-1 and NUTS-0 (equals countries) regions for the period 1990-2014. The data are also disaggregated by sex: female, male, and total.<br>
DOI: 10.6084/m9.figshare.3084202
title: Code for producing the simulations in 'Nearly Neutral Evolution Across the Drosophila melanogaster Genome'

description: Files containing the SLiM input files and processing code used to run SLiM and produce figures 4 and 5 in the manuscript 'Nearly Neutral Evolution Across the Drosophila melanogaster Genome'. <br>The full SLiM manual, and the software, are available from: https://messerlab.org/slim/ <br><br>- - - - - - - - - - <br>Figure 4 notes:<br>Please see ‘figure4-SLiM_input_example.txt’ for reference. This is an example of an input file used for SLiM.<br>To produce the figure, the frequency of adaptive mutations (class ‘m1’), as a proportion of total mutations that occur, was altered by changing the initializeGenomicElementType() line. The frequencies used were as follows: 0.05%, 0.1%, 0.15%, 0.2%, 0.25%, 0.3%, 0.35%, 0.4%, 0.45% and 0.5%.<br>example line from script, such that m1 mutations occur as 0.05% of all mutations:initializeGenomicElementType("g1", c(m1, m2, m3, m4, m5, m6, m7, m8, m9, m10), c(0.0005, 0.11105555, 0.11105555, 0.11105555, 0.11105555, 0.11105555, 0.11105555, 0.11105555, 0.11105555, 0.11105555)).<br>Allowing for recombination:initializeRecombinationRate() line was changed: using parameters 0.00001 and 0.00005.<br>For figure 4, we calculated the nucleotide site diversity of each different class of mutation. The python code for performing the analysis is available- the code has been divided into three files, that are labelled in order in which they should be run.<br>- - - - - - - - - - <br>Figure 5 notes:<br>Please see ‘figure5-SLiM_input_example.txt’ for reference. This is an example of an input file used for SLiM.<br><br>Again, the frequency of adaptive mutations (class ‘m1’), as a proportion of total mutations that occur, was altered by changing the initializeGenomicElementType() line. The frequencies used were as follows: 0.05%, 0.1%, 0.2%, 0.3%, 0.4%, 0.5%, 0.8% and 1%.<br>Deleterious mutations and neutral mutations occur with equal frequency, with deleterious mutations having fitness effects draw from a gamma distribution.<br>The python code for performing the analysis is available, as above- the code is largely similar, however, in figure 5, rather than nucleotide site diversity, synonymous and nonsynonymous polymorphism counts are used.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.3084205
title: DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA

description: All alignment files and polymorphism results used in 'DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA'<br>Polymorphism_concat_total_mt:A zip file, containing all the polymorphism alignments used in this study. All are mammalian mitochondrial DNA<br>mampol_results_full_concat:A spreadsheet containing the full polymorphism data for the mammalian mitochondrial dataset used in this study<br>pantheria_and_mampol:A dspreadsheet containing all the species for which we have both polymorphism and life history data
DOI: 10.6084/m9.figshare.3084343.v1
title: Strong decline in the consumption of invertebrates by Barn Owls from 1860 to 2012 in Europe

description: <b>Capsule</b> The analysis of 616 papers about the diet of the European Barn Owl <i>Tyto alba</i> showed that 9678 invertebrates were captured out of 3.13 million prey items (0.31%). The consumption of invertebrates strongly decreased between 1860 and 2012. This further demonstrates that the Barn Owl diet changed to a large extent during the last 150 years.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/oolp9v
title: GIS_coverage.tab

description: :unav
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/aqxu3c
title: gate_err.tab

description: :unav
DOI: 10.6084/m9.figshare.3084205.v1
title: DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA

description: All alignment files and polymorphism results used in 'DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA'<br>Polymorphism_concat_total_mt:A zip file, containing all the polymorphism alignments used in this study. All are mammalian mitochondrial DNA<br>mampol_results_full_concat:A spreadsheet containing the full polymorphism data for the mammalian mitochondrial dataset used in this study<br>pantheria_and_mampol:A dspreadsheet containing all the species for which we have both polymorphism and life history data
DOI: 10.6084/m9.figshare.3084175
title: The femoral ontogeny and long bone histology of the Middle Triassic (?late Anisian) dinosauriform <i>Asilisaurus kongwe</i> and implications for the growth of early dinosaurs

description: The ontogeny of early-diverging dinosauromorphs is poorly understood because few ontogenetic series from the same species-level taxon are known and what is available has not been extensively documented. The large numbers of skeletal elements of the silesaurid <i>Asilisaurus kongwe</i> recently recovered from Tanzania provide an opportunity to examine the ontogenetic trajectory of the earliest known member of Ornithodira and one of the closest relatives to Dinosauria. We examined the ontogeny of the femur and the histology of a series of long bone elements. We observed bone scar variation in a series of femora (n = 27) of different lengths (73.8–177.2 mm). We hypothesize that most femora follow a similar developmental trajectory; however, we observed sequence polymorphism in the order of appearance and shape of bone scars, and we quantified this polymorphism using ontogenetic sequence analysis (OSA). Additionally, five femora, three tibiae, a fibula, and a humerus were thin-sectioned to examine osteological tissues. No lines of arrested growth (LAGs) are present in any specimen, and there is little histological information about the ontogenetic stage of femora, although none have slowed or ceased growth. The woven-fibered bone present in the cortex of elements sectioned is similar to that of the earliest dinosaurs. This sequence polymorphism provides an alternate hypothesis for the robust/gracile dichotomy found in early dinosaurs often interpreted as sexual dimorphism. The shared femoral features found in <i>Asilisaurus</i> and early dinosaurs suggest that this ontogenetic pattern is plesiomorphic for Dinosauria, and that size is a poor predictor of maturity in early dinosauriforms. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Griffin, C. T., and S. J. Nesbitt. 2016. The femoral ontogeny and long bone histology of the Middle Triassic (?late Anisian) dinosauriform <i>Asilisaurus kongwe</i> and implications for the growth of early dinosaurs. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1111224.
DOI: 10.6084/m9.figshare.3084175.v1
title: The femoral ontogeny and long bone histology of the Middle Triassic (?late Anisian) dinosauriform <i>Asilisaurus kongwe</i> and implications for the growth of early dinosaurs

description: The ontogeny of early-diverging dinosauromorphs is poorly understood because few ontogenetic series from the same species-level taxon are known and what is available has not been extensively documented. The large numbers of skeletal elements of the silesaurid <i>Asilisaurus kongwe</i> recently recovered from Tanzania provide an opportunity to examine the ontogenetic trajectory of the earliest known member of Ornithodira and one of the closest relatives to Dinosauria. We examined the ontogeny of the femur and the histology of a series of long bone elements. We observed bone scar variation in a series of femora (n = 27) of different lengths (73.8–177.2 mm). We hypothesize that most femora follow a similar developmental trajectory; however, we observed sequence polymorphism in the order of appearance and shape of bone scars, and we quantified this polymorphism using ontogenetic sequence analysis (OSA). Additionally, five femora, three tibiae, a fibula, and a humerus were thin-sectioned to examine osteological tissues. No lines of arrested growth (LAGs) are present in any specimen, and there is little histological information about the ontogenetic stage of femora, although none have slowed or ceased growth. The woven-fibered bone present in the cortex of elements sectioned is similar to that of the earliest dinosaurs. This sequence polymorphism provides an alternate hypothesis for the robust/gracile dichotomy found in early dinosaurs often interpreted as sexual dimorphism. The shared femoral features found in <i>Asilisaurus</i> and early dinosaurs suggest that this ontogenetic pattern is plesiomorphic for Dinosauria, and that size is a poor predictor of maturity in early dinosauriforms. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Griffin, C. T., and S. J. Nesbitt. 2016. The femoral ontogeny and long bone histology of the Middle Triassic (?late Anisian) dinosauriform <i>Asilisaurus kongwe</i> and implications for the growth of early dinosaurs. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1111224.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/x7e7j2
title: sector_D.tab

description: :unav
DOI: 10.6084/m9.figshare.3084172
title: Impact of the phoretic phase on reproduction and damage caused by Varroa destructor to the European Honey Bee. raw_data.xlsx

description: We investigated if the type of bees on which <i>Varroa</i> stays during the phoretic phase and if the duration of this stay influenced the reproductive success of the parasite and the damage caused to bees. For that purpose, we used an <i>in vitro</i> rearing method developed in our laboratory to assess egg laying rate and the presence and number of fully molted daughters. The expression level of two <i>Varroa</i> vitellogenin genes (VdVg1 and VdVg2), known to vary throughout reproduction, was also quantified. Results showed that the status of the bees or time spent during the phoretic phase impacts neither reproduction parameters nor the <i>Varroa</i> vitellogenin genes levels of expression. However, we correlated these parameters to the gene expression and demonstrated that daughters expressed the vitellogenin genes at lower levels than their mother. Regarding the damage to bees, the data indicated that a longer stay on adult bees during the phoretic phase resulted in more frequent physical deformity in newborn bees. We showed that those mites carry more viral loads of the Deformed Wing Virus and hence trigger more frequently overt infections. This study provides new perspectives towards a better understanding of the <i>Varroa</i>-honeybee interactions.
DOI: 10.6084/m9.figshare.3084319.v1
title: IJEE Educational Data Mining

description: Results of k-means and Ward's clustering for IJEE Educational Data Mining
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/wjvlnw
title: region_err.tab

description: :unav
DOI: 10.6084/m9.figshare.3084166
title: FANCD2 influences replication fork processes and genome stability in response to clustered DSBs

description: Fanconi Anemia (FA) is a cancer predisposition syndrome and the factors defective in FA are involved in DNA replication, DNA damage repair and tumor suppression. Here, we show that FANCD2 is critical for genome stability maintenance in response to high-linear energy transfer (LET) radiation. We found that FANCD2 is monoubiquitinated and recruited to the sites of clustered DNA double-stranded breaks (DSBs) specifically in S/G2 cells after high-LET radiation. Further, FANCD2 facilitated the repair of clustered DSBs in S/G2 cells and proper progression of S-phase. Furthermore, lack of FANCD2 led to a reduced rate of replication fork progression and elevated levels of both replication fork stalling and new origin firing in response to high-LET radiation. Mechanistically, FANCD2 is required for correct recruitment of RPA2 and Rad51 to the sites of clustered DSBs and that is critical for proper processing of clustered DSBs. Significantly, FANCD2-decifient cells exhibited defective chromosome segregation, elevated levels of chromosomal aberrations, and anchorage-independent growth in response to high-LET radiation. These findings establish FANCD2 as a key factor in genome stability maintenance in response to high-LET radiation and as a promising target to improve cancer therapy.
DOI: 10.6084/m9.figshare.3084166.v1
title: FANCD2 influences replication fork processes and genome stability in response to clustered DSBs

description: Fanconi Anemia (FA) is a cancer predisposition syndrome and the factors defective in FA are involved in DNA replication, DNA damage repair and tumor suppression. Here, we show that FANCD2 is critical for genome stability maintenance in response to high-linear energy transfer (LET) radiation. We found that FANCD2 is monoubiquitinated and recruited to the sites of clustered DNA double-stranded breaks (DSBs) specifically in S/G2 cells after high-LET radiation. Further, FANCD2 facilitated the repair of clustered DSBs in S/G2 cells and proper progression of S-phase. Furthermore, lack of FANCD2 led to a reduced rate of replication fork progression and elevated levels of both replication fork stalling and new origin firing in response to high-LET radiation. Mechanistically, FANCD2 is required for correct recruitment of RPA2 and Rad51 to the sites of clustered DSBs and that is critical for proper processing of clustered DSBs. Significantly, FANCD2-decifient cells exhibited defective chromosome segregation, elevated levels of chromosomal aberrations, and anchorage-independent growth in response to high-LET radiation. These findings establish FANCD2 as a key factor in genome stability maintenance in response to high-LET radiation and as a promising target to improve cancer therapy.
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/uuhviw
title: sector_coverage.tab

description: :unav
DOI: 10.6084/m9.figshare.3084130
title: IQGAP1 is associated with nuclear envelope reformation and completion of abscission

description: The final stage of mitosis is cytokinesis, which results in 2 independent daughter cells. Cytokinesis has 2 phases: membrane ingression followed by membrane abscission. IQGAP1 is a scaffold protein that interacts with proteins implicated in mitosis, including F-actin, myosin and CaM. IQGAP1 in yeast recruits actin and myosin II filaments to the contractile ring for membrane ingression. In contrast, we show that mammalian IQGAP1 is not required for ingression, but coordinates nuclear pore complex (NPC) reassembly and completion of abscission. Depletion of IQGAP1 disrupts Nup98 and mAb414 nuclear envelope localization and delays abscission timing. IQGAP1 phosphorylation increases 15-fold upon mitotic entry at S86, S330 and T1434, with the latter site being targeted by CDK2/Cyclin A and CDK1/Cyclin A/B <i>in vitro</i>. Expressing the phospho-deficient mutant IQGAP1-S330A impairs NPC reassembly in cells undergoing abscission. Thus, mammalian IQGAP1 functions later in mitosis than its yeast counterpart to regulate nuclear pore assembly in a S330 phosphorylation-dependent manner during the abscission phase of cytokinesis.
DOI: 10.6084/m9.figshare.3084319.v2
title: IJEE Educational Data Mining

description: Results of k-means and Ward's clustering for IJEE Educational Data Mining
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/euxnvl
title: gate_D.tab

description: :unav
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/x2anq8
title: region_D.tab

description: :unav
DOI: 10.6084/m9.figshare.3084319.v3
title: IJEE Educational Data Mining

description: Results of k-means and Ward's clustering for IJEE special issue<br>
DOI: 10.22008/promice/data/ice_discharge/d/v0.0.1/h5bvrg
title: region_coverage.tab

description: :unav