cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11095248
title: QR GWAS summary statistics for 39 quantitative traits in the UK Biobank

description: Quantile regression (QR) GWAS summary statistics from the study "Genome-wide discovery for biomarkers using quantile regression at biobank scale". The study has been published and is available at https://doi.org/10.1038/s41467-024-50726-x.

List of traits

A comma-delimited text file, QRGWAS.Traits_n39.csv, includes the list of 39 quantitative traits from the UK Biobank reported in the QR GWAS analyses above.

Summary statistics

The tab-delimited text files are QR GWAS summary statistics, which are bgzip compressed (.tsv.gz files) and tabix indexed (.tbi files).



Column "CHR": chromosome

Column "POS": based pair position

Column "ID": variant ID

Column "REF": non-effect allele

Column "ALT": effect allele tested in GWAS

Column "EAF": frequency of the effect allele

Column "N": sample size

Column "P_QR": integrated p-value of the quantile regression (QR) model across multiple quantile levels.

Column "P_LR": p-value of the linear regression (LR) association statistic

Columns from "P_Q10" to "P_Q90": quantile-specific QR p-value for the quantile levels 0.1, 0.2, ..., 0.9 (10th, 20th, ..., 90th quantiles).
DOI: 10.5281/zenodo.11095249
title: QR GWAS summary statistics for 39 quantitative traits in the UK Biobank

description: Quantile regression (QR) GWAS summary statistics from the study "Genome-wide discovery for biomarkers using quantile regression at biobank scale". The study has been published and is available at https://doi.org/10.1038/s41467-024-50726-x.

List of traits

A comma-delimited text file, QRGWAS.Traits_n39.csv, includes the list of 39 quantitative traits from the UK Biobank reported in the QR GWAS analyses above.

Summary statistics

The tab-delimited text files are QR GWAS summary statistics, which are bgzip compressed (.tsv.gz files) and tabix indexed (.tbi files).



Column "CHR": chromosome

Column "POS": based pair position

Column "ID": variant ID

Column "REF": non-effect allele

Column "ALT": effect allele tested in GWAS

Column "EAF": frequency of the effect allele

Column "N": sample size

Column "P_QR": integrated p-value of the quantile regression (QR) model across multiple quantile levels.

Column "P_LR": p-value of the linear regression (LR) association statistic

Columns from "P_Q10" to "P_Q90": quantile-specific QR p-value for the quantile levels 0.1, 0.2, ..., 0.9 (10th, 20th, ..., 90th quantiles).
DOI: 10.15468/dl.jah396
title: Occurrence Download

description: A dataset containing 815863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Upeneus moluccensis, Pseudosuccinea columella, Galba truncatula, Heliotropium curassavicum, Prosopis chilensis, Paranais frici, Cercopagis pengoi, Gammarus lacustris, Gmelinoides fasciatus, Pontogammarus robustoides, Procambarus fallax, Canis procyonoides, Bromopsis inermis, Galega orientalis, Vinca minor, Chaenorhinum minus, Euphorbia cyparissias, Elaeagnus commutata, Cotoneaster lucidus, Ribes uva-crispa)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 815863 records from 2471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022928-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdaqna
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is Inventaire de la réserve naturelle géologique de Saucats - La Brède-Etude sur les protocoles I2M2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220093-230224095556074/datasets/export for details.
DOI: 10.15468/dl.jmah5m
title: Occurrence Download

description: A dataset listing the 76304 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((26.7542939189847 1.2186193716968,36.9991642472184 13.6345880476356,41.544901412726 10.038706409249,37.5419388341447 2.16847489881781,35.84576825 -7.80500813595271,36.2528491901947 -16.0144737632128,34.2174444892211 -16.5572483501391,27.5006089760084 -8.95840413317107,26.7542939189847 1.2186193716968))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 76304 records were derived from 1132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015275-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47jqcx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is Base de données faune - DREAL Centre-Val de Loire. Points / polylignes",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220097-230224095556074/datasets/export for details.
DOI: 10.15468/dl.dgdyfy
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puya obconica L.B.Sm."
 ]
}

 The dataset includes 33 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098842-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdk2a3
title: Occurrence Download

description: A dataset containing 845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "CoordinateUncertaintyInMeters 0.0-31.0",
 "Country is United States of America",
 "Geometry POLYGON((-136.25583 22.09077,-53.80189 22.09077,-53.80189 52.37046,-136.25583 52.37046,-136.25583 22.09077))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bromus diandrus Roth"
 ]
}

 The dataset includes 845 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023244-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6544x
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea namaquamontana Goldblatt"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043543-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8v3n4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycopodium clavatum f. monostachyum Hegi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220094-230224095556074/datasets/export for details.
DOI: 10.15468/dl.rs2ftw
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puya nivalis Baker"
 ]
}

 The dataset includes 11 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098836-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32akru
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Freycinetia rectangularis Kaneh."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220100-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rs7ty
title: Occurrence Download

description: A dataset containing 4366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Truncatellina cylindrica (J.B.Férussac, 1807)"
 ]
}

 The dataset includes 4366 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023277-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq6j7n
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea namaquana (Goldblatt) Goldblatt"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043544-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72kbct
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is Inventaire de la réserve naturelle géologique de Saucats - La Brède-Inventaire entomologiques",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220098-230224095556074/datasets/export for details.
DOI: 10.15468/dl.wa25rg
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puya novarae G.S.Varad. ex Gómez Rom. & A.Grau"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098838-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2m9b3
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Imperata cylindrica (L.) P.Beauv."
 ]
}

 The dataset includes 124 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039703-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6dk73
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is Suivi et inventaire de la réserve naturelle de Saucats - La Brède-Inventaire et suivi Entomologiques de 2012-2013",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220101-230224095556074/datasets/export for details.
DOI: 10.15468/dl.sxjvct
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus pasachoensis C.P.Sm."
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015272-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkh28j
title: Occurrence Download

description: A dataset containing 786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.5_2",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "Year 2015-2015"
 ]
}

 The dataset includes 786 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126046-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2ss7k
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycopodium clavatum subsp. megastachyon (Fernald & Bissell) Á.Löve & D.Löve",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220099-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xs4rwr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria rhomboidalis Grossh."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121813-230530130749713/datasets/export for details.
DOI: 10.15468/dl.4nq5h2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia medogensis F.H.Chen & C.M.Hu"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016897-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dp4gf5
title: Occurrence Download

description: A dataset containing 68094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlidonias niger (Linnaeus, 1758))",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 29.93667",
 "DecimalLatitude is less than or equal to 51.91193",
 "DecimalLongitude is greater than or equal to -14.67522",
 "DecimalLongitude is less than or equal to 39.79752",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 68094 records from 378 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039740-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jwypk
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dialysis elongata"
 ]
}

 The dataset includes 269 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008217-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16107743
title: OMG-Octo Atypical: A refinement of the original OMG-Octo database to incorporate atypical mitoses

description: In this study, we pre-trained our model on the MIDOG 2025 atypical mitoses database (AMi-Br: 832 atypical and 2,888 normal mitotic figures and MIDOG-Atypical (1748 atypical and 10191 normal mitoses), From this model, we inferred to find atypical mitoses within our OMG-Octo dataset and found 10678 potential candidates. Dedicated pathologists reviewed 3024 of them (1378 atypical, 394 apoptotic,  379 normal MF,  399 Noise and 462 Unsure). The results are uploaded here under a CC BY.0 NC ND 4.0 International License. 

Publications and upates will follow.
DOI: 10.5281/zenodo.16103852
title: E-cooker system and metered data from the SET Project

description: SET e-cooker PV-battery system data and metered data from a connected pressure cooker, induction hob and light. System parameters/units and household/system ID numbers are given in the attached tables. The meter data files have the suffix P, I and L for the pressure cooker, induction hob and light, respectively. 

In comparison to version 2: 10.5281/zenodo.13896192, this version of the system and metered data has had a timestamp correction applied. During installation, several of the dataloggers were disconnected causing an error in the timestamps to occur. A timestamp correction has been applied based on the initial PV output reading for each dataset. Due to missing data or errors occurring during maintenance/operation that cannot be reliably corrected, households 1, 4, 7, 9, 15 and 17 have been removed from this version of the datasets.

The household kitchen sensor data can be found in version 1: 10.5281/zenodo.13192469

The survey data can be found in version 3: 10.5281/zenodo.13907668

We would like to acknowledge the financial support of the Innovate UK, Energy Catalyst programme for funding the Solar Energy Transitions (SET) Inclusive e-cooking in sub-Saharan Africa Project (10044025).

We would like to thank project delivery partners Coventry University, Mesh Power and Rwanda Energy Group and recognise Climate Solutions Consulting for their significant technical input. Our thanks extends to Kayonza District and its district leaders, REG’s community mobilisers and translators, Mesh Power’s technical support team and the Coventry University Africa Hub.

Our profound thanks go to all the participating households, whose engagement was crucial to the project’s success.

To cite, please use:

Nixon, J., Halford, A., Ashraf, R., Habyarimana, C., Kabananiye, J., Lefebvre, O., & Mori, R. (2024). Data from the SET Project [Data set]. Zenodo. 10.5281/zenodo.13192468.
DOI: 10.15468/dl.3rrrwj
title: Occurrence Download

description: A dataset containing 684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solidago gigantea",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 684 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008218-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bhnz6
title: Occurrence Download

description: A dataset containing 34899 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rudbeckia laciniata"
 ]
}

 The dataset includes 34899 records from 529 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008216-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sqau6
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADM0628"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008220-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcyjqq
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crotalaria agatiflora",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 150 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008219-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvpqwf
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba mongolica"
 ]
}

 The dataset includes 145 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008221-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxcsjj
title: Occurrence Download

description: A dataset containing 1509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Hyla wrightorum)"
 ]
}

 The dataset includes 1509 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008222-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15311015
title: E-cooker system and metered data from the SET Project

description: This version has been replaced by version 5 which has corrected the labelling of some files
DOI: 10.5281/zenodo.13192468
title: E-cooker system and metered data from the SET Project

description: SET e-cooker PV-battery system data and metered data from a connected pressure cooker, induction hob and light. System parameters/units and household/system ID numbers are given in the attached tables. The meter data files have the suffix P, I and L for the pressure cooker, induction hob and light, respectively. 

In comparison to version 2: 10.5281/zenodo.13896192, this version of the system and metered data has had a timestamp correction applied. During installation, several of the dataloggers were disconnected causing an error in the timestamps to occur. A timestamp correction has been applied based on the initial PV output reading for each dataset. Due to missing data or errors occurring during maintenance/operation that cannot be reliably corrected, households 1, 4, 7, 9, 15 and 17 have been removed from this version of the datasets.

The household kitchen sensor data can be found in version 1: 10.5281/zenodo.13192469

The survey data can be found in version 3: 10.5281/zenodo.13907668

We would like to acknowledge the financial support of the Innovate UK, Energy Catalyst programme for funding the Solar Energy Transitions (SET) Inclusive e-cooking in sub-Saharan Africa Project (10044025).

We would like to thank project delivery partners Coventry University, Mesh Power and Rwanda Energy Group and recognise Climate Solutions Consulting for their significant technical input. Our thanks extends to Kayonza District and its district leaders, REG’s community mobilisers and translators, Mesh Power’s technical support team and the Coventry University Africa Hub.

Our profound thanks go to all the participating households, whose engagement was crucial to the project’s success.

To cite, please use:

Nixon, J., Halford, A., Ashraf, R., Habyarimana, C., Kabananiye, J., Lefebvre, O., & Mori, R. (2024). Data from the SET Project [Data set]. Zenodo. 10.5281/zenodo.13192468.
DOI: 10.15468/dl.p8fjhk
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlegmatospermum cochlearinum"
 ]
}

 The dataset includes 546 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008223-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.