cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12448988.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-9673 to JVASP-10852)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.25718610.v1
title: Fig 2D-E western blots, quantification, and statistical analyses

description: These are the full blot images, quantified data, and statistical analyses for Figure 2D-E.
DOI: 10.6084/m9.figshare.20899666.v1
title: How much is soil nitrous oxide emission reduced with biochar application? An evaluation of meta-analyses

description: This data file includes five datasets related to the impacts of biochar on soil N2O emission in cropland. The synthesized results were generated from 18 meta-analyses. No field collections and approval were required.
DOI: 10.17632/4ph3dr3vg5
title: Reducing stigma and increasing workplace productivity due to mental health difficulties: A randomised control treatment trial (RCT) of a low intensity psychological intervention and stigma reduction programme for common mental disorder (Prevail).

description: Data from the study are presented in a series of files
1) three files contain the data from the evaluation of the course (All starting with "prevail....").  These were generated from within the DVLA and contain only data at group levels.
2) Data from the evaluation of mental health literacy pre and post Prevail are provided in in an SPSS database ("SASS database").  
3) data for sick leave in the period before and after the Prevail programme are provided in an Excel database (Sickness data).  These data were compiled by the DVLA and are only at the level of groups.
DOI: 10.6084/m9.figshare.14413712.v1
title: Picozoa: cleaned single genes, initial supermatrix tree

description: cleaned alignments and fasta files for 317 phylogenetic marker genes. Supermatrix alignments and reconstructed tree<br>
DOI: 10.17632/587n28b4bx
title: Rare-earth magnet on hemostat demonstrating precise location of retained suture needle.

description: Video: Rare-earth magnet on hemostat demonstrating precise location of retained suture needle.
DOI: 10.6084/m9.figshare.3112822
title: Reporting mental health problems of undocumented migrants in Greece: A qualitative exploration

description: <b>Background:</b> Mental health problems are highly prevalent amongst undocumented migrants (UMs), and often part of their consultations with general practitioners (GPs). Little empirical data are available of how GPs and UMs engage around mental health in Greece, a country with a lack of balance between primary and secondary care and limited healthcare provisions for UMs. <b>Objectives:</b> To acquire insight in the barriers and levers in the provision of mental healthcare for UMs by GPs in Greece. <b>Methods:</b> This was a qualitative study using semi-structured interviews with 12 GPs in Crete, Greece with clinical expertise in the care of UMs. All interviews were audio-taped and transcribed verbatim and were analysed using thematic content analysis. <b>Results:</b> Greek GPs recognized many mental health problems in UMs and identified the barriers that prevented them from discussing these problems and delivering appropriate care: growing societal resistance towards UMs, budget cuts in healthcare, administrative obstacles and lack of support from the healthcare system. To overcome these barriers, Greek GPs provided UMs with free access to care and psychotropic drugs free of charge, and referred to other primary care professionals rather than to mental healthcare institutions. <b>Conclusion:</b> Greek GPs experienced substantial barriers in the provision of mental healthcare to UMs and political, economic and organizational factors played a major role.
DOI: 10.6084/m9.figshare.8124017.v1
title: Supplementary Material for: Metformin Prevents Progression of Experimental Pulmonary Hypertension via Inhibition of Autophagy and Activation of Adenosine Monophosphate-Activated Protein Kinase

description: Previous studies have shown that metformin (MET) prevents experimental pulmonary arterial hypertension (PAH) and that activation of autophagy is involved in the development of pulmonary vascular remodeling. However, the mechanism of how MET inhibits autophagy and reverses pulmonary vascular remodeling is still unclear. The objective of the present study was to investigate the role of autophagy in MET-induced hypoxia PAH protection and the underlying mechanisms. To examine the effects of MET on hypoxia, we treated rats with MET (100 mg/kg/day) after 3 weeks of hypoxia. Hemodynamic changes, weight of the right ventricle/left ventricle plus septum (RV/LV+S) ratio, and lung morphological features were examined after 3 weeks. In addition, alpha smooth muscle actin (α-SMA), p62, and PCNA were assessed by immunofluorescence and immunohistochemistry staining. BECN-1, LC3B, p62, and activation of adenosine monophosphate-activated protein kinase (AMPK) were analyzed by Western blotting. Cell proliferation was detected using the Cell Counting Kit-8 (CCK-8) and the 5-ethynyl-2′-deoxyuridine staining kit assay. Hypoxia induced increases in right ventricular systolic pressure and the RV/LV+S ratio, which were attenuated by MET treatment. MET also inhibited hypoxia-induced pulmonary vascular remodeling, collagen deposition, proliferation of pulmonary arterial smooth muscle cells, elevation of BECN-1 and the LC3B-II/-I ratio, and downregulation of p62. Further studies found that this process was mediated by inhibition of autophagy and activation of the AMPK signaling pathway.
DOI: 10.6084/m9.figshare.16418937.v1
title: Supplementary Material for: Early-Onset Vascular Dementia in a 43-Year-Old Man with Accelerated Atherosclerotic Disease, Elevated Lipoprotein (a), and a Missense DNAJC5 Variant with Potential Association to Adult-Onset Ceroid Lipofuscinosis

description: Early-onset dementia is defined as dementia occurring prior to the age of 65. Given its impact on physical, mental, and socioeconomic well-being, it is crucial to identify modifiable risk factors. Here, we report a 43-year-old man with early-onset dementia associated with elevated lipoprotein (a) and a missense variant in the DNAJC5 gene. He presented to the hospital with memory loss and multiple cerebrovascular infarcts. Eight months prior, an MRI revealed small acute and subacute infarcts involving the left PCA for which he was treated with antiplatelet agents and a statin. Three months later, he was readmitted for progressive memory loss. CT imaging showed evolving and new infarcts compared to prior scans. A cardiac echocardiogram excluded thrombus and PFO, and he was diagnosed with early vascular dementia. He was readmitted again 5 months later with additional evaluation revealing multifocal moderate to severe stenosis and irregularities involving the bilateral ICA and bilateral PCAs. MRI showed more pronounced infarcts compared to a previous MRI as well as new infarcts. CSF studies, VDRL, RF, ANA, ANCA, homocysteine, and MMA levels were normal. Lipoprotein (a) was found to be markedly elevated, and genetic testing revealed a missense variant of the DNAJC5 gene, the mutation of which is associated with ceroid lipofuscinosis. In conclusion, in patients with early-onset dementia and evidence of accelerated atherosclerosis, it is reasonable to measure Lp(a) and consider testing for variants in genes such as DNAJC5 and others, particularly when disease severity appears unexplained by known risk factors or circumstances.
DOI: 10.17632/bt33w4h3b9
title: Episodic correlations in behavioural lateralisation differ between a poison frog and its mimic

description: We tested three primary hypotheses: 1) behaviours will be lateralised, either at the individual or population level, 2) behaviours will show complementary laterality such that different tasks will be allocated to different sides of the animal, and 3) the scale of lateralisation will differ between social and non-social behaviours, such that social behaviours will be lateralised at the population level while non-social behaviours will be lateralised only at the individual level, allowing for social behaviours to be coordinated while non-social behaviours remain unpredictable. We also conducted a further exploratory analysis to determine the presence of lateralisation-based within-individual correlations. Experiments were conducted on sympatric populations of the Ecuador poison frog, Ameerega bilinguis, and its Batesian mimic the sanguine dart frog, Allobates zaparo. Individuals repeatedly experienced four types of trials where they were exposed to a conspecific (Am. bilinguis/Al. zaparo), a heterospecific (Am. bilinguis/Al. zaparo), prey (live termites) or a simulated predator (the human observer). All trials were then analysed for lateralised eye use inspecting the stimulus (in the conspecific, heterospecific and prey trials) or for escape direction (in the simulated predator trials).
DOI: 10.6084/m9.figshare.26021878.v1
title: Dataset for Microphysiological 3D Musculoskeletal Tissue Model with Enhanced Mechanical Stability

description: image data, image analysis data, quantitative analysis data of gene expression and cytokine secretion, finite element analysis data
DOI: 10.6084/m9.figshare.3523193.v1
title: Appendix C. A table showing the results of the log-linear analysis.

description: A table showing the results of the log-linear analysis.
DOI: 10.6084/m9.figshare.5668633.v1
title: Discussion of the paraxial approximation and numerical analysis of spherical aberration

description: Textbooks intended to undergraduate students discuss image formation by mirrors and lens based on paraxial approximation. This conventional approach has ambiguities and lacks which induce students to conceptual mistakes. This paper points out those ambiguities and demonstrates that a basic proposition of paraxial approximation has a very limited scope. Furthermore, as a didactical tool to overcome conceptual difficulties, figures are presented depicting ray trajectories and spherical aberrations, computed precisely in terms of the focusing systematic error, for object points at an infinite distance from the optic system, in different cases of mirrors and lenses. Results show that a ) the aberration for each ray depends mainly on the angular distance of its incidence point, b ) the aberration behavior is the same in mirrors and lens, c ) in concave and convex mirrors, for the same angular distance, focusing errors are the same, d ) the aberration varies in lens according to their light-facing side.
DOI: 10.5281/zenodo.11359113
title: The number of genes whose TE significantly correlates with an RBP's expression differed widely for RBPs
DOI: 10.5281/zenodo.11359114
title: The number of genes whose TE significantly correlates with an RBP's expression differed widely for RBPs
DOI: 10.6084/m9.figshare.26180764.v1
title: Bat GBP5 codon Prank alignment (for Le Corf et al. 2025)

description: Bat GBP5 codon Prank alignment (for Le Corf et al. 2025)
DOI: 10.17632/3zzkm8fymm
title: FT-IR, FT-Raman, UV-Visible Spectral Data for 4-Hydroxy Carbazole

description: The FT-IR spectrum was recorded in the mid IR region on a Perkin Elmer- spectrum Two FT-IR/ATR spectrometer system with 0.50 cm −1 resolution at SAIF, St.Peters University, Chennai, Tamil Nadu, India. The FT-Raman spectrum was recorded in the mid IR region on a Bruker RFS-27 FT-Raman spectrometer with 2 cm −1 resolution using 1064 nm spectral line of Nd: YAG laser for excitation, operating at 100 mW power as excitation wave length at SAIF, IIT Madras, Chennai, Tamil Nadu, India. The electronic spectrum was recorded in methanol on a Perkin Elmer-Lambda 35 UV Winlab V6.0 Spectrometer with a Bandwidth 0.5–4 nm (variable)in the UV–vis region at SAIF, St.Peters University, Chennai, Tamil Nadu, India.
DOI: 10.6084/m9.figshare.17211737.v1
title: Supplementary item 8 - Transcription factor orthogroup trees

description: The TF orthogroup protein-trees generated in this study (for the orthogroups OG0000000 &gt; OG0000591). These are in Newick format and can be visualised in the reader's chosen tree-viewing platform such as iTOL (Letunic and Bork, 2019). The branch lengths are defined by the DendroBLAST distance measure (Kelly and Maini, 2013).
DOI: 10.6084/m9.figshare.21669857.v1
title: Weed target detection at seedling stage in paddy fields based on YOLOX

description: The collection method is 60~80cm away from weeds, and the camera lens is perpendicular to the water surface of the paddy fields. In total, 210 images were obtained by the image acquisition platform in the field.
DOI: 10.6084/m9.figshare.24590679.v1
title: <b>Recent decline in tropical temperature sensitivity of atmospheric CO</b><sub><strong>2</strong></sub><b> growth rate variability</b>

description: A two-fold enhancement in the sensitivity of atmospheric CO2 growth rate to tropical temperature interannual variability (Gamma^T_CGR) till early 2000s has been reported, which suggests a drought-induced shift in terrestrial carbon cycle responding temperature fluctuations, thereby accelerating global warming. However, using six decades long atmospheric CO2 observations, we show that Gamma^T_CGR has significantly declined in the last two decades, to the level during the 1960s. The Gamma^T_CGR decline begs the question of whether the sensitivity of ecosystem carbon cycle to temperature variations at local scale has largely decreased. With state-of-the-art dynamic global vegetation models, we further find that the recent Gamma^T_CGR decline is barely attributed to ecosystem carbon cycle response to temperature fluctuations at local scale, which instead results from a decrease of spatial coherence in tropical temperature variability and land use change. Our results suggest that the recently reported loss of rainforest resilience has not shown marked influence on the temperature sensitivity of ecosystem carbon cycle. Nevertheless, the increasing extent of land use change as well as more frequent and intensive drought events are likely to modulate the responses of ecosystem carbon cycle to temperature variations in the future. Therefore, our study highlights the priority to continuously monitor the temperature sensitivity of atmospheric CO2 growth rate variability and improve Earth system model representation on land use change, in order to predict the carbon-climate feedback.
DOI: 10.6084/m9.figshare.25036037.v1
title: 2021_04_26-DSS_day12

description: Flow cytometry data for day twelve of the DSS experiment. Mice have been exposed to DSS for five days at this stage. DSS was removed and replaced with normal drinking water after fecal collection on this day.Key:F1 = female mice, cage 1F2 = female mice, cage 2M1 = male mice, cage 1M2 = male mice, cage 2E1 (or 2, 3) = with EdU, replicate 1 (or 2, 3)no E1 (or 2) = without EdU, replicate 1 (or 2)
DOI: 10.6084/m9.figshare.5123587.v1
title: Supplementary Material for: Differences in Cognitive Profile between TIA, Stroke and Elderly Memory Research Subjects: A Comparison of the MMSE and MoCA

description: <b><i>Background:</i></b> The Montreal Cognitive Assessment (MoCA) appears more sensitive to mild cognitive impairment (MCI) than the Mini-Mental State Examination (MMSE): over 50% of TIA and stroke patients with an MMSE score of ≥27 (‘normal’ cognitive function) at ≥6 months after index event, score &lt;26 on the MoCA, a cutoff which has good sensitivity and specificity for MCI in this population. We hypothesized that sensitivity of the MoCA to MCI might in part be due to detection of different patterns of cognitive domain impairment. We therefore compared performance on the MMSE and MoCA in subjects without major cognitive impairment (MMSE score of ≥24) with differing clinical characteristics: a TIA and stroke cohort in which frontal/executive deficits were expected to be prevalent and a memory research cohort. <b><i>Methods:</i></b> The MMSE and MoCA were done on consecutive patients with TIA or stroke in a population-based study (Oxford Vascular Study) 6 months or more after the index event and on consecutive subjects enrolled in a memory research cohort (the Oxford Project to Investigate Memory and Ageing). Patients with moderate-to-severe cognitive impairment (MMSE score of &lt;24), dysphasia or inability to use the dominant arm were excluded. <b><i>Results:</i></b> Of 207 stroke patients (mean age ± SD: 72 ± 11.5 years, 54% male), 156 TIA patients (mean age 71 ± 12.1 years, 53% male) and 107 memory research subjects (mean age 76 ± 6.6 years, 46% male), stroke patients had the lowest mean ± SD cognitive scores (MMSE score of 27.7 ± 1.84 and MoCA score of 22.9 ± 3.6), whereas TIA (MMSE score of 28.4 ± 1.7 and MoCA score of 24.9 ± 3.3) and memory subject scores (MMSE score of 28.5 ± 1.7 and MoCA score of 25.5 ± 3.0) were more similar. Rates of MoCA score of &lt;26 in subjects with normal MMSE ( ≥27) were lowest in memory subjects, intermediate in TIA and highest after stroke (34 vs. 48 vs. 67%, p &lt; 0.001). The cerebrovascular patients scored lower than the memory subjects on all MoCA frontal/executive subtests with differences being most marked in visuoexecutive function, verbal fluency and sustained attention (all p &lt; 0.0001) and in stroke versus TIA (after adjustment for age and education). Stroke patients performed worse than TIA patients only on MMSE orientation in contrast to 6/10 subtests of the MoCA. Results were similar after restricting analyses to those with an MMSE score of ≥27. <b><i>Conclusions:</i></b> The MoCA demonstrated more differences in cognitive profile between TIA, stroke and memory research subjects without major cognitive impairment than the MMSE. The MoCA showed between-group differences even in those with normal MMSE and would thus appear to be a useful brief tool to assess cognition in those with MCI, particularly where the ceiling effect of the MMSE is problematic.
DOI: 10.6084/m9.figshare.7940567.v1
title: Results of Anesthesiology evaluations and participants' characteristics

description: Results of Anesthesiology evaluations and participants' characteristics.
DOI: 10.6084/m9.figshare.14617122.v2
title: The Conceptual Synthesis and Development of a Multifunctional Lawnmower

description: This document contains the following:- experimental data used for analyses to validate the usability of the multifunctional lawnmower.- program codes for the lawnmower system.- schematic of the circuit design.
DOI: 10.6084/m9.figshare.2009712.v1
title: supporting information.zip

description: <b>File 1.</b> Raw data of the EEM results <b>File 2</b>. Raw data of the HRTEM results <b>File 3.</b> Raw data of the FTIR results <b>File 4.</b> Raw data of the HRTEM-EDS results
DOI: 10.6084/m9.figshare.5786928.v2
title: Peripheral neuropathy in patients with multiple sclerosis.xlsx

description: Patients with multiple sclerosis have evidence of sudomotor dysfunction and elevated vibration perception, which were associated with neurological disability from MS.
DOI: 10.17632/2bhgbvgn9p
title: Dataset for "Multiplexed Digital Detection of B-ALL Leukemia Fusion Transcripts using the NanoString nCounter System" Publication

description: This dataset contains the validation data and analysis result for designing and developing a barcode-based nanoString nCounter technology for multiplexed detection of B-ALL leukemia fusion transcripts. Chromosomal rearrangements resulting in fusion transcripts have been reported in precursor B-cell acute lymphoblastic leukemia (B-ALL). Identification of fusion events is critical in the diagnosis and treatment of B-ALL. In this study, we used nanoString technology to design, validate and evaluate a multiplex panel for detection of B-ALL fusion- transcripts. Fifty-one B-ALL fusion transcripts reported in children in the literature were included in the design of the nanoString panel. Twenty-six fusion transcripts were validated using 64 positive control samples and 74 negative control samples with 100% sensitivity and 99% in comparison to RT-PCR. Our results support a potential role of nanoString as a robust and cost-effective technique that could be used in the detection of fusion transcripts and implemented in diagnostic algorithm of B-ALL. Please refer to more detailed description under each file inside the folders.
DOI: 10.17632/d454bcyd6x
title: Growth, Characterization, and Photovoltaic Application of Copper Oxide Thin Films

description: These are experimental data for the characterization of cuprous and cupric oxide, grown as thin films by electrodeposition. There are results for XRD, XPS (valence band measurement), SEM, EDS, Raman Spectroscopy, Optical Spectroscopy, Electrochemical Voltammetry and related techniques. Also, there are some theoretical results, calculated from DFT.
DOI: 10.6084/m9.figshare.3464144.v1
title: Database_PC.dta

description: Dear researcher, If you would like to work with this database for research purposes, please contact the Principal Investigator, Percy Mayta-Tristán (p.mayta@gmail.com, percy.mayta@upc.edu.pe). We will be honored to work collaboratively with you.<br>Thanks.
DOI: 10.6084/m9.figshare.5126440.v1
title: Supplementary Material for: The Developmental Mismatch in Structural Brain Maturation during Adolescence

description: Regions of the human brain develop at different rates across the first two decades of life, with some maturing before others. It has been hypothesized that a mismatch in the timing of maturation between subcortical regions (involved in affect and reward processing) and prefrontal regions (involved in cognitive control) underlies the increase in risk-taking and sensation-seeking behaviors observed during adolescence. Most support for this ‘dual systems' hypothesis relies on cross-sectional data, and it is not known whether this pattern is present at an individual level. The current study utilizes longitudinal structural magnetic resonance imaging (MRI) data to describe the developmental trajectories of regions associated with risk-taking and sensation-seeking behaviors, namely, the amygdala, nucleus accumbens (NAcc) and prefrontal cortex (PFC). Structural trajectories of gray matter volumes were analyzed using FreeSurfer in 33 participants aged 7-30 years, each of whom had at least three high-quality MRI scans spanning three developmental periods: late childhood, adolescence and early adulthood (total 152 scans). The majority of individuals in our sample showed relatively earlier maturation in the amygdala and/or NAcc compared to the PFC, providing evidence for a mismatch in the timing of structural maturation between these structures. We then related individual developmental trajectories to retrospectively assessed self-reported risk-taking and sensation-seeking behaviors during adolescence in a subsample of 24 participants. Analysis of this smaller sample failed to find a relationship between the presence of a mismatch in brain maturation and risk-taking and sensation-seeking behaviors during adolescence. Taken together, it appears that the developmental mismatch in structural brain maturation is present in neurotypically developing individuals. This pattern of development did not directly relate to self-reported behaviors at an individual level in our sample, highlighting the need for prospective studies combining anatomical and behavioral measures.
DOI: 10.17632/bst7wdxs6t
title: Advanced image-identified extranodal extension of retropharyngeal lymph node in the refinement of N classification for nasopharyngeal carcinoma

description: All the anonymized data in this paper
DOI: 10.17632/xspmshb596
title: Type 2 diabetes impacts the efficacy of syphilis treatment and is a risk factor for late syphilis: a retrospective cohort study and Mendelian Randomization analyses

description: Type 2 diabetes impacts the efficacy of syphilis treatment and is a risk factor for late syphilis: a retrospective cohort study and Mendelian Randomization analyses