cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2593818
title: Mining Rule Violations in JavaScript Code Snippets

description: <strong>Content of this repository</strong><br>
This is the repository that contains the scripts and dataset for the MSR 2019 mining challenge

Github Repository with the software used : here.<br>
=======

<strong>DATASET</strong><br>
The dataset was retrived utilizing google bigquery and dumped to a csv<br>
file for further processing, this original file with no treatment is called jsanswers.csv, here we can find the following information :<br>
1. The Id of the question (PostId)<br>
2. The Content (in this case the code block)<br>
3. the lenght of the code block<br>
4. the line count of the code block<br>
5. The score of the post<br>
6. The title

A quick look at this files, one can notice that a postID can have multiple rows related to it, that's how multiple codeblocks are saved in the database.

<strong>Filtered Dataset:</strong>

<strong>Extracting code from CSV</strong><br>
We used a python script called "ExtractCodeFromCSV.py" to extract the code from the original csv and merge all the codeblocks in their respective javascript file with the postID as name, this resulted in 336 thousand files.

<strong>Running ESlint</strong><br>
Due to the single threaded nature of ESlint, we needed to create a script to run ESlint because it took a huge toll on the machine to run it on 336 thousand files, this script is named "ESlintRunnerScript.py", it splits the files in 20 evenly distributed parts and runs 20 processes of esLinter to generate the reports, as such it generates 20 json files.

<strong>Number of Violations per Rule</strong><br>
This information was extracted using the script named "parser.py", it generated the file named "NumberofViolationsPerRule.csv" which contains the number of violations per rule used in the linter configuration in the dataset.

<strong>Number of violations per Category</strong><br>
As a way to make relevant statistics of the dataset, we generated the number of violations per rule category as defined in the eslinter website, this information was extracted using the same "parser.py" script.

<strong>Individual Reports</strong><br>
This information was extracted from the json reports, it's a csv file with PostID and violations per rule.

<strong>Rules</strong><br>
The file Rules with categories contains all the rules used and their categories.
DOI: 10.5281/zenodo.2593833
title: APPENDIX A: Measurement items and reliabilities

description: <strong>Understanding the Adoption of Quantified Self-Tracking Wearable Devices in the Organization Environment: An Empirical Case Study</strong>

<strong>APPENDIX A:</strong> <strong>Measurement items and reliabilities</strong>
DOI: 10.5281/zenodo.2593834
title: APPENDIX A: Measurement items and reliabilities

description: <strong>Understanding the Adoption of Quantified Self-Tracking Wearable Devices in the Organization Environment: An Empirical Case Study</strong>

<strong>APPENDIX A:</strong> <strong>Measurement items and reliabilities</strong>
DOI: 10.17632/rc24nf6tg2.1
title: Solving the Christoffel equation: Phase and group velocities

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We provide christoffel, a Python tool for calculating direction-dependent phase velocities, polarization vectors, group velocities, power flow angles and enhancement factors based on the stiffness tensor of a solid. It is built in a modular way to allow for efficient and flexible calculations, and the freedom to select and combine results as desired. All derivatives are calculated analytically, which circumvents possible numerical sampling problems. GNUPlot scripts are provided for convenient... Title of program: Christoffel Catalogue Id: AFAT_v1_0 Nature of problem Calculating acoustic phase and group velocities in homogeneous solids Versions of this program held in the CPC repository in Mendeley Data AFAT_v1_0; Christoffel; 10.1016/j.cpc.2016.06.014
DOI: 10.17632/xnwjvk86bs.1
title: Transfer reaction code with nonlocal interactions

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a suite of codes (NLAT for nonlocal adiabatic transfer) to calculate the transfer cross section for single-nucleon transfer reactions, ( d , N ) or ( N , d ) , including nonlocal nucleon–target interactions, within the adiabatic distorted wave approximation. For this purpose, we implement an iterative method for solving the second order nonlocal differential equation, for both scattering and bound states. The final observables that can be obtained with NLAT are differential angular... Title of program: NLAT Catalogue Id: AFAY_v1_0 Nature of problem Calculates cross sections for deuteron induced single-nucleon transfer reactions using nonlocal potentials within the adiabatic distorted wave approximation. Versions of this program held in the CPC repository in Mendeley Data AFAY_v1_0; NLAT; 10.1016/j.cpc.2016.06.022
DOI: 10.5281/zenodo.2582409
title: PathoPhenoDB: a database of pathogen-phenotype associations

description: PathoPhenoDB is a database containing pathogen-to-phenotype associations mined from the scientific literature. PathoPhenoDB relies on manual curation of pathogen-disease relations, and on ontology-based text mining to associate phenotypes with infectious disease. Using Semantic Web technologies, PathoPhenoDB also links to knowledge about drug resistance mechanisms and drugs used in the treatment of infectious diseases. The information in PathoPhenoDB can provide background knowledge about known pathogens, diseases, and phenotypes, and the drugs to which they respond; it therefore provides a tool for research on infectious diseases and drug mechanisms. PathoPhenoDB is accessible at http://patho.phenomebrowser.net/, and the data is freely available through a public SPARQL endpoint.
description: Version 1.2.0 has been manually checked to remove non-human pathogens.
DOI: 10.5281/zenodo.2592933
title: PathoPhenoDB: a database of pathogen-phenotype associations

description: PathoPhenoDB is a database containing pathogen-to-phenotype associations mined from the scientific literature. PathoPhenoDB relies on manual curation of pathogen-disease relations, and on ontology-based text mining to associate phenotypes with infectious disease. Using Semantic Web technologies, PathoPhenoDB also links to knowledge about drug resistance mechanisms and drugs used in the treatment of infectious diseases. The information in PathoPhenoDB can provide background knowledge about known pathogens, diseases, and phenotypes, and the drugs to which they respond; it therefore provides a tool for research on infectious diseases and drug mechanisms. PathoPhenoDB is accessible at http://patho.phenomebrowser.net/, and the data is freely available through a public SPARQL endpoint.
description: Version 1.2.1 includes labels and description; formal content is identical to v1.2.0.
DOI: 10.17632/kwz8tv8x4c.1
title: SOLARPROP: Charge-sign dependent solar modulation for everyone

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present SOLARPROP, a tool to compute the influence of charge-sign dependent solar modulation for cosmic ray spectra. SOLARPROP is able to use the output of popular tools like GALPROP or DRAGON and offers the possibility to embed new models for solar modulation. We present some examples for proton, antiproton and positron fluxes in the light of the recent PAMELA and AMS-02 data. Title of program: SOLARPROP Catalogue Id: AFAP_v1_0 Nature of problem Calculation of the influence on cosmic rays by the heliosphere including drift effects. Versions of this program held in the CPC repository in Mendeley Data AFAP_v1_0; SOLARPROP; 10.1016/j.cpc.2016.05.025
DOI: 10.17632/nczhmksz4w.1
title: SPILADY: A parallel CPU and GPU code for spin–lattice magnetic molecular dynamics simulations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Spin–lattice dynamics generalizes molecular dynamics to magnetic materials, where dynamic variables describing an evolving atomic system include not only coordinates and velocities of atoms but also directions and magnitudes of atomic magnetic moments (spins). Spin–lattice dynamics simulates the collective time evolution of spins and atoms, taking into account the effect of non-collinear magnetism on interatomic forces. Applications of the method include atomistic models for defects, dislocat... Title of program: SPILADY, version 1.0 Catalogue Id: AFAN_v1_0 Nature of problem Excitation of magnetic degrees of freedom affects a broad range of properties of magnetic materials, including their equilibrium crystal structure and response to mechanical deformation. Existing atomistic simulation methods, for example molecular dynamics, do not treat magnetic degrees of freedom and do not describe the effect of magnetism on interatomic forces. This is addressed by the spin-lattice dynamics approach. The integration algorithm satisfies the requirement of phase volume conservat ... Versions of this program held in the CPC repository in Mendeley Data AFAN_v1_0; SPILADY, version 1.0; 10.1016/j.cpc.2016.05.017
DOI: 10.17632/tzgkv9m5fr.1
title: ngravs: Distinct gravitational interactions in gadget-2

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We discuss an extension of the massively parallel cosmological simulation code gadget-2, which now enables investigation of multiple and distinct gravitational force laws, provided they are dominated by a constant scaling of the Newtonian force. In addition to simplifying investigations of a universally modified force law, the ngravs extension provides a foundation for state-of-the-art collisionless cosmological simulations of exotic gravitational scenarios. We briefly review the algorithms u... Title of program: Gadget-2.0.7-ngravs Catalogue Id: AFAV_v1_0 Nature of problem N-body cosmological codes are traditionally designed to investigate a single gravitating species interacting via the Newtonian force law. There exist viable extensions to General Relativity [1], however, which predict weakfield, slow-motion limits featuring distinct gravitational force laws between distinct particle species. To enable investigation and constraint of these theories with available astrophysical data, a necessary first step is to extend an N-body simulator to handle distinct gravit ... Versions of this program held in the CPC repository in Mendeley Data AFAV_v1_0; Gadget-2.0.7-ngravs; 10.1016/j.cpc.2016.06.018
DOI: 10.5281/zenodo.2592931
title: Estimating malaria disease burden in the Asia-Pacific

description: This repository hosts all the Supplementary Material for the publication: Maude RJ, Mercado CEG, Rowley J, Ekapirat N, Dondorp AM. (2019) Estimating malaria disease burden in the Asia-Pacific (under review)
DOI: 10.5281/zenodo.2592932
title: Estimating malaria disease burden in the Asia-Pacific

description: This repository hosts all the Supplementary Material for the publication: Maude RJ, Mercado CEG, Rowley J, Ekapirat N, Dondorp AM. (2019) Estimating malaria disease burden in the Asia-Pacific (under review)
DOI: 10.17632/6f258nw37w.1
title: PyVCI: A flexible open-source code for calculating accurate molecular infrared spectra

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The PyVCI program package is a general purpose open-source code for simulating accurate molecular spectra, based upon force field expansions of the potential energy surface in normal mode coordinates. It includes harmonic normal coordinate analysis and vibrational configuration interaction (VCI) algorithms, implemented primarily in Python for accessibility but with time-consuming routines written in C. Coriolis coupling terms may be optionally included in the vibrational Hamiltonian. Non-negl... Title of program: PyVCI Catalogue Id: AFAC_v1_0 Nature of problem The simulation of accurate molecular vibrational spectra is a significant and long-standing problem in computational chemistry. There are two major challenges: constructing an accurate ab initio potential energy surface and solving the nuclear vibrational problem. Both scale poorly with respect to molecular size, requiring large amounts of CPU time and memory. Versions of this program held in the CPC repository in Mendeley Data AFAC_v1_0; PyVCI; 10.1016/j.cpc.2016.02.026
DOI: 10.17632/rhrbt5ddkk.1
title: Amp: A modular approach to machine learning in atomistic simulations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Electronic structure calculations, such as those employing Kohn–Sham density functional theory or ab initio wavefunction theories, have allowed for atomistic-level understandings of a wide variety of phenomena and properties of matter at small scales. However, the computational cost of electronic structure methods drastically increases with length and time scales, which makes these methods difficult for long time-scale molecular dynamics simulations or large-sized systems. Machine-learning te... Title of program: Amp Catalogue Id: AFAK_v1_0 Nature of problem Atomic interactions within many-body systems typically have complicated functional forms, difficult to represent in simple pre-decided closed-forms. Versions of this program held in the CPC repository in Mendeley Data AFAK_v1_0; Amp; 10.1016/j.cpc.2016.05.010
DOI: 10.17632/spj6rk2sgw.1
title: molgw 1: Many-body perturbation theory software for atoms, molecules, and clusters

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We summarize the molgw code that implements density-functional theory and many-body perturbation theory in a Gaussian basis set. The code is dedicated to the calculation of the many-body self-energy within the G W approximation and the solution of the Bethe–Salpeter equation. These two types of calculations allow the user to evaluate physical quantities that can be compared to spectroscopic experiments. Quasiparticle energies, obtained through the calculation of the G W ... Title of program: MOLGW Catalogue Id: AFAW_v1_0 Nature of problem Prediction of the electronic structure of atoms, molecules, clusters with a particular interest in their spectroscopic features, such as quasiparticle energies and optical spectra. Versions of this program held in the CPC repository in Mendeley Data AFAW_v1_0; MOLGW; 10.1016/j.cpc.2016.06.019
DOI: 10.17632/tfvvthfvz7.1
title: Highly efficient spatial data filtering in parallel using the opensource library CPPPO

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract CPPPO is a compilation of parallel data processing routines developed with the aim to create a library for “scale bridging” (i.e. connecting different scales by mean of closure models) in a multi-scale approach. CPPPO features a number of parallel filtering algorithms designed for use with structured and unstructured Eulerian meshes, as well as Lagrangian data sets. In addition, data can be processed on the fly, allowing the collection of relevant statistics without saving individual snapshot... Title of program: CPPPO Catalogue Id: AFAQ_v1_0 Nature of problem Development of closure models for momentum, species transport and heat transfer in fluid and fluid-particle systems using purely Eulerian or Euler-Lagrange simulators. Versions of this program held in the CPC repository in Mendeley Data AFAQ_v1_0; CPPPO; 10.1016/j.cpc.2016.05.026
DOI: 10.17632/6fvyvmn9gm.1
title: openPSTD: The open source pseudospectral time-domain method for acoustic propagation

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract An open source implementation of the Fourier pseudospectral time-domain (PSTD) method for computing the propagation of sound is presented, which is geared towards applications in the built environment. Being a wave-based method, PSTD captures phenomena like diffraction, but maintains efficiency in processing time and memory usage as it allows to spatially sample close to the Nyquist criterion, thus keeping both the required spatial and temporal resolution coarse. In the implementation it has ... Title of program: openPSTD v1.1 Catalogue Id: AFAA_v1_0 Nature of problem Sound propagation Versions of this program held in the CPC repository in Mendeley Data AFAA_v1_0; openPSTD v1.1; 10.1016/j.cpc.2016.02.029
DOI: 10.17632/b87d49kcv4.1
title: Data for: Corrosion and high-temperature steam oxidation of E110 alloy and its laser welds after ion irradiation

description: EDS data
DOI: 10.17632/c9pwxsg2z7.1
title: HASEonGPU—An adaptive, load-balanced MPI/GPU-code for calculating the amplified spontaneous emission in high power laser media

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present an adaptive Monte Carlo algorithm for computing the amplified spontaneous emission (ASE) flux in laser gain media pumped by pulsed lasers. With the design of high power lasers in mind, which require large size gain media, we have developed the open source code HASEonGPU that is capable of utilizing multiple graphic processing units (GPUs). With HASEonGPU, time to solution is reduced to minutes on a medium size GPU cluster of 64 NVIDIA Tesla K20m GPUs and excellent speedup is achiev... Title of program: HASEonGPU Catalogue Id: AFAM_v1_0 Nature of problem The algorithm described by D. Albach in [1,2] uses ray-tracing techniques and Monte Carlo integration to calculate Amplified Spontaneous Emission (ASE) with high precision. It requires a high number of sampling points as well as a high number of rays to reach the desired results. Additionally, reflections on the upper and lower surface of the medium increase the workload by an order of magnitude. On traditional CPU-based systems the computation is time-consuming, which limits the number of simul ... Versions of this program held in the CPC repository in Mendeley Data AFAM_v1_0; HASEonGPU; 10.1016/j.cpc.2016.05.019
DOI: 10.17632/chyvzb8k4x.1
title: ExoData: A Python package to handle large exoplanet catalogue data

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Exoplanet science often involves using the system parameters of real exoplanets for tasks such as simulations, fitting routines, and target selection for proposals. Several exoplanet catalogues are already well established but often lack a version history and code friendly interfaces. Software that bridges the barrier between the catalogues and code enables users to improve the specific repeatability of results by facilitating the retrieval of exact system parameters used in articles results ... Title of program: ExoData Catalogue Id: AFAL_v1_0 Nature of problem Being able to use exoplanet catalogue values in code including where there may be incomplete and incorrectly formatted values. Also being able to use the whole catalogue data at once, both for user querying, visualisation and in large simulation programs. Versions of this program held in the CPC repository in Mendeley Data AFAL_v1_0; ExoData; 10.1016/j.cpc.2016.05.009
DOI: 10.17632/f88kw6wzfk.1
title: MPL—A program for computations with iterated integrals on moduli spaces of curves of genus zero

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We introduce the Maple program MPL for computations with multiple polylogarithms. The program is based on homotopy invariant iterated integrals on moduli spaces M 0 , n of curves of genus 0 with n ordered marked points. It includes the symbol map and procedures for the analytic computation of period integrals on M 0 , n . It supports the automated computation of a certain class of Feynman integrals. Title of program: MPL Catalogue Id: AFAE_v1_0 Nature of problem The program serves for computations with a class of iterated integrals, defined on moduli spaces of curves of genus zero. It allows for the automated computation of period integrals of these spaces. Furthermore, based on these iterated integrals, it supports the automated, analytic computation of a certain class of Feynman integrals of perturbative quantum field theory. Versions of this program held in the CPC repository in Mendeley Data AFAE_v1_0; MPL; 10.1016/j.cpc.2016.02.033
DOI: 10.17632/hjtsj9vr6g.1
title: mr: A C++ library for the matching and running of the Standard Model parameters

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present the C++ program library mr that allows us to reliably calculate the values of the running parameters in the Standard Model at high energy scales. The initial conditions are obtained by relating the running parameters in the MS renormalization scheme to observables at lower energies with full two-loop precision. The evolution is then performed in accordance with the renormalization group equations with full three-loop precision. Pure QCD corrections to the matching and run... Title of program: mr Catalogue Id: AFAI_v1_0 Nature of problem The running parameters of the Standard Model renormalized in the MS scheme at some high renormalization scale, which is chosen by the user, are evaluated in perturbation theory as precisely as possible in two steps. First, the initial conditions at the electroweak energy scale are evaluated from the Fermi constant G F and the pole masses of the W , Z, and Higgs bosons and the bottom and top quarks including the full two-loop threshold corrections. Second, the evolution to the high energy scale i ... Versions of this program held in the CPC repository in Mendeley Data AFAI_v1_0; mr; 10.1016/j.cpc.2016.04.017
DOI: 10.17632/29prmpr2hj.1
title: METHES: A Monte Carlo collision code for the simulation of electron transport in low temperature plasmas

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a freely available MATLAB code for the simulation of electron transport in arbitrary gas mixtures in the presence of uniform electric fields. For steady-state electron transport, the program provides the transport coefficients, reaction rates and the electron energy distribution function. The program uses established Monte Carlo techniques and is compatible with the electron scattering cross section files from the open-access Plasma Data Exchange Project LXCat. The code is written ... Title of program: METHES Catalogue Id: AEZY_v1_0 Nature of problem Simulation of electron transport in arbitrary gas mixtures in the presence of electric fields. Versions of this program held in the CPC repository in Mendeley Data AEZY_v1_0; METHES; 10.1016/j.cpc.2016.02.022