cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20012511.v1
title: Adsorption of P and forms of iron in no-tillage areas in the 'Cerrado' biome

description: The objective of this study was to evaluate the forms of iron extracted as sodium dithionite-citrate-bicarbonate (Fed), acid ammonium oxalate (Feo) and sodium pyrophosphate (Fep) and the relationship between these variables and the total organic carbon content and maximum adsorption capacity of P (MACP). The areas selected for this study had been using a no-tillage system (NTS) for varying periods of time: 3 years (NTS3), 15 years (NTS15) and 20 years (NTS20). These areas were compared with an area of native 'Cerrado' (CE) and a pasture area planted with Brachiaria decumbens (PA). The soil of the areas studied was classified as dystrophic oxisol. In each area, samples were collected at 0-5 cm and 5-10 cm. A correlation was observed between the C content and the different forms of Fe in the areas studied. There was a significant positive correlation between the carbon content and the forms of iron (Feo, Feo/Fed and Fep) and a negative correlation with the level of Fed. The areas of CE and PA had the highest MACP, which diminished as the amount of time of NTS use increased.
DOI: 10.6084/m9.figshare.20012512
title: Analysis of the genetic diversity of Eucalyptus cladocalyx (sugar gum) using ISSR markers

description: Eucalyptus cladocalyx F. Muell is a tree endemic to southern Australia and is distributed across four isolated regions: Kangaroo Island, southern Flinders Ranges, and two geographical zones in Eyre Peninsula. E. cladocalyx is capable of growing under extreme environmental conditions, including dry and saline soils. The objective of this study was to analyze genetic diversity in 45 half-sib families planted in northern Chile that are distributed across five different zones (provenances). Genetic variability was assessed using ISSR (Inter Simple Sequence Repeat) molecular markers. The results showed low levels of genetic diversity within populations (He = 0.113 to 0.268) in contrast with other Eucalyptus species. In addition, there was a significant genetic differentiation among provenances (Φst = 0.14); populations from the Kangaroo Island provenance showed more differentiation than any other population. These results are in agreement with previous studies of the species. Our study revealed that Chilean resources are a representative sample of Australian populations; therefore, the germplasm planted in northern Chile would be sufficient for the development of improvement programs. ISSR-Marker technology could be an alternative to identify genotypes of interest in material selection.
DOI: 10.6084/m9.figshare.20012512.v1
title: Analysis of the genetic diversity of Eucalyptus cladocalyx (sugar gum) using ISSR markers

description: Eucalyptus cladocalyx F. Muell is a tree endemic to southern Australia and is distributed across four isolated regions: Kangaroo Island, southern Flinders Ranges, and two geographical zones in Eyre Peninsula. E. cladocalyx is capable of growing under extreme environmental conditions, including dry and saline soils. The objective of this study was to analyze genetic diversity in 45 half-sib families planted in northern Chile that are distributed across five different zones (provenances). Genetic variability was assessed using ISSR (Inter Simple Sequence Repeat) molecular markers. The results showed low levels of genetic diversity within populations (He = 0.113 to 0.268) in contrast with other Eucalyptus species. In addition, there was a significant genetic differentiation among provenances (Φst = 0.14); populations from the Kangaroo Island provenance showed more differentiation than any other population. These results are in agreement with previous studies of the species. Our study revealed that Chilean resources are a representative sample of Australian populations; therefore, the germplasm planted in northern Chile would be sufficient for the development of improvement programs. ISSR-Marker technology could be an alternative to identify genotypes of interest in material selection.
DOI: 10.6084/m9.figshare.20012514
title: Parental selection for the formation of interspecific hybrid populations of oil palm

description: The objective of this work was to select families with superior performance and large genetic variability for diallel crosses for potential use in the pre-breeding of oil palm. The experiment consisted of 42 full-sib families divided into three trials with 16 families and 3 witnesses in common in randomized blocks, with four blocks and 12 plants per block. The characteristics evaluated in the experiment were number of bunches per plant (NBP), bunch weight per plant (BWP) and bunch average weight per plant (BAW). The estimation of variance components showed that there was greater genetic variance within families than between families. The heritability for all traits was high, above 0.75, and the coefficient of environmental variation was low to moderate for all traits (between 4 and 13). Tocher's method separated families into seven groups, whereas the UPGMA method identified six groups. To use the best families in diallel crosses, families 15, 14, 22, 21, 28, 37, 33 and 39 were selected based on individual performance as determined by the Scott-Knott test and genetic diversity by grouping.
DOI: 10.6084/m9.figshare.20012514.v1
title: Parental selection for the formation of interspecific hybrid populations of oil palm

description: The objective of this work was to select families with superior performance and large genetic variability for diallel crosses for potential use in the pre-breeding of oil palm. The experiment consisted of 42 full-sib families divided into three trials with 16 families and 3 witnesses in common in randomized blocks, with four blocks and 12 plants per block. The characteristics evaluated in the experiment were number of bunches per plant (NBP), bunch weight per plant (BWP) and bunch average weight per plant (BAW). The estimation of variance components showed that there was greater genetic variance within families than between families. The heritability for all traits was high, above 0.75, and the coefficient of environmental variation was low to moderate for all traits (between 4 and 13). Tocher's method separated families into seven groups, whereas the UPGMA method identified six groups. To use the best families in diallel crosses, families 15, 14, 22, 21, 28, 37, 33 and 39 were selected based on individual performance as determined by the Scott-Knott test and genetic diversity by grouping.
DOI: 10.6084/m9.figshare.20012515
title: Rhizobial diversity from stem and root nodules of Discolobium and Aeschynomene

description: Among the genera that exhibit stem nodulation, Aeschynomene and Discolobium are found in the Pantanal Mato-grossense (wetlands in the state of Mato Grosso, Brazil). Isolates obtained from the stem and root nodules of D. pulchellum, D. psoraleaefolium, D. leptophyllum and A. fluminensis were collected from various locations in the Pantanal de Poconé sub-region and phenotypically characterized and genotyped by restriction analysis of the 16S rDNA gene. Of the 282 isolates obtained from the stem and root nodules, 84.3% alkalized YMA media and 74.1% showed slow growth. No differences in either the phenotype or the genotype among the rhizobial populations isolated from the root or stem nodules of the species Discolobium and A. fluminensis were observed. Among the isolates obtained from D. pulchellum, there was a group that was not similar to any of the reference strains used, and most of the isolates analyzed by PCR-RFLP were similar to the genus Bradyrhizobium.
DOI: 10.6084/m9.figshare.20012515.v1
title: Rhizobial diversity from stem and root nodules of Discolobium and Aeschynomene

description: Among the genera that exhibit stem nodulation, Aeschynomene and Discolobium are found in the Pantanal Mato-grossense (wetlands in the state of Mato Grosso, Brazil). Isolates obtained from the stem and root nodules of D. pulchellum, D. psoraleaefolium, D. leptophyllum and A. fluminensis were collected from various locations in the Pantanal de Poconé sub-region and phenotypically characterized and genotyped by restriction analysis of the 16S rDNA gene. Of the 282 isolates obtained from the stem and root nodules, 84.3% alkalized YMA media and 74.1% showed slow growth. No differences in either the phenotype or the genotype among the rhizobial populations isolated from the root or stem nodules of the species Discolobium and A. fluminensis were observed. Among the isolates obtained from D. pulchellum, there was a group that was not similar to any of the reference strains used, and most of the isolates analyzed by PCR-RFLP were similar to the genus Bradyrhizobium.
DOI: 10.6084/m9.figshare.20012517
title: Changes in pectinases, dietary fibers, and physicochemical indices related to the flavor of cubiu fruits during ripening

description: The objective of this study was to evaluate the changes in the activity of pectinases (pectinesterase and polygalacturonase), dietary fiber content (alcohol-insoluble solids, pectin, and total fiber), and physicochemical indices related to the flavor (pH, titratable acidity, soluble solids, Brix/acid ratio, and reducing and nonreducing sugars) of cubiu fruits (Solanum sessiliflorum Dunal) at different stages of ripening (green, turning, ripe, and fully ripe). Alcohol-insoluble solids and pectin were very similar, with the highest levels detected at the green and turning stages, and the lowest levels occurring at the fully ripe stage. The amount of total fiber was consistent at the green, turning, and ripe stages, but declined at the fully ripe stage. These changes correlated with the pectinase activities, the profiles of which resembled those of other species of the Solanaceae family during fruit ripening. However, cubiu fruits were significant sources of dietary fiber at all stages. The reducing sugar content reached the highest level at the turning stage, with glucose as the major sugar. The content of nonreducing sugars, such as sucrose, remained low at all stages. The other physicochemical indices displayed increases during ripening, characterizing cubiu as a very acidic fruit with a small degree of sweetness.
DOI: 10.6084/m9.figshare.20012517.v1
title: Changes in pectinases, dietary fibers, and physicochemical indices related to the flavor of cubiu fruits during ripening

description: The objective of this study was to evaluate the changes in the activity of pectinases (pectinesterase and polygalacturonase), dietary fiber content (alcohol-insoluble solids, pectin, and total fiber), and physicochemical indices related to the flavor (pH, titratable acidity, soluble solids, Brix/acid ratio, and reducing and nonreducing sugars) of cubiu fruits (Solanum sessiliflorum Dunal) at different stages of ripening (green, turning, ripe, and fully ripe). Alcohol-insoluble solids and pectin were very similar, with the highest levels detected at the green and turning stages, and the lowest levels occurring at the fully ripe stage. The amount of total fiber was consistent at the green, turning, and ripe stages, but declined at the fully ripe stage. These changes correlated with the pectinase activities, the profiles of which resembled those of other species of the Solanaceae family during fruit ripening. However, cubiu fruits were significant sources of dietary fiber at all stages. The reducing sugar content reached the highest level at the turning stage, with glucose as the major sugar. The content of nonreducing sugars, such as sucrose, remained low at all stages. The other physicochemical indices displayed increases during ripening, characterizing cubiu as a very acidic fruit with a small degree of sweetness.
DOI: 10.6084/m9.figshare.20012521
title: 'Desiccation tolerance of Rhamnidium elaeocarpum Reissek (Rhamnaceae) seeds

description: This study aimed to investigate the desiccation tolerance of Rhamnidium elaeocarpum Reissek seeds through physiological and biochemical alterations. Fruit were collected from the municipality of Jaupaci, Goias State, Brazil, when the water content of their seeds had a 37% wet basis (w.b.) and the seeds were subsequently kept in a drying oven with air circulation at a temperature of 35ºC until a water content was reached of 20 to 12% (w.b.). The following parameters were evaluated: germination, germination speed index, emergence, emergence speed index, electrical conductivity and respiration rate. Furthermore, the electrophoretic profile of the isoenzymes: catalase, peroxidase and esterase, the enzymatic activities of endo-β-mannanase and α-amylase and the electrophoretic analysis of heat-resistant proteins were performed. A higher germination speed and respiratory rate was obtained for seeds with a water content of 12% w.b., and the activity of catalase isoforms was more pronounced in seeds with a higher degree of dehydration, which was in contrast to peroxidase, showed decreased activity. The seeds contained heat-resistant proteins of low molecular weight that ranged from 48.7 to 13.2 kDa. We found that the acquisition of drying tolerance in R. Elaeocarpum Reissek seeds is associated more with catalase than with esterase and peroxidase.
DOI: 10.6084/m9.figshare.20012521.v1
title: 'Desiccation tolerance of Rhamnidium elaeocarpum Reissek (Rhamnaceae) seeds

description: This study aimed to investigate the desiccation tolerance of Rhamnidium elaeocarpum Reissek seeds through physiological and biochemical alterations. Fruit were collected from the municipality of Jaupaci, Goias State, Brazil, when the water content of their seeds had a 37% wet basis (w.b.) and the seeds were subsequently kept in a drying oven with air circulation at a temperature of 35ºC until a water content was reached of 20 to 12% (w.b.). The following parameters were evaluated: germination, germination speed index, emergence, emergence speed index, electrical conductivity and respiration rate. Furthermore, the electrophoretic profile of the isoenzymes: catalase, peroxidase and esterase, the enzymatic activities of endo-β-mannanase and α-amylase and the electrophoretic analysis of heat-resistant proteins were performed. A higher germination speed and respiratory rate was obtained for seeds with a water content of 12% w.b., and the activity of catalase isoforms was more pronounced in seeds with a higher degree of dehydration, which was in contrast to peroxidase, showed decreased activity. The seeds contained heat-resistant proteins of low molecular weight that ranged from 48.7 to 13.2 kDa. We found that the acquisition of drying tolerance in R. Elaeocarpum Reissek seeds is associated more with catalase than with esterase and peroxidase.
DOI: 10.5281/zenodo.6141833
title: Intronization signatures in coding exons reveal the evolutionary fluidity of eukaryotic gene architecture

description: This dataset accompanies the manuscript "Intronization signatures in coding exons reveal the evolutionary fluidity of eukaryotic gene architecture". It contains the relevant tables, scripts and figures used for and created during data analysis.
DOI: 10.5281/zenodo.6141832
title: Intronization signatures in coding exons reveal the evolutionary fluidity of eukaryotic gene architecture

description: This dataset accompanies the manuscript "Intronization signatures in coding exons reveal the evolutionary fluidity of eukaryotic gene architecture". It contains the relevant tables, scripts and figures used for and created during data analysis.
DOI: 10.6084/m9.figshare.20012523
title: Effects of high proline accumulation on chloroplast and mitochondrial ultrastructure and on osmotic adjustment in tobacco plants

description: Proline accumulates in many organisms in response to abiotic stresses, such as drought and salinity. Reports have discussed the role of proline in relation to osmotic adjustment, even though no clear-cut evidence has yet been provided demonstrating this association as a defense mechanism against drought stress in plants. However, it has been indicated that the application of exogenous proline can damage the ultrastructure of chloroplasts and mitochondria. In this study, using transgenic tobacco plants carrying a mutant p5cs gene from Vigna aconitifolia under control of the CaMV 35S promoter, we show that the high levels of endogenous proline accumulated in leaves does not contribute to the osmotic adjustment in plants under water deficit conditions. Additionally, electron microscopic observations of mitochondria and chloroplasts show that the ultrastructure of these organelles was not damaged even in the transgenic plants, with the leaves presenting the highest endogenous proline content in (100 µmol g-1 dry mass). This investigation demonstrates that in tobacco, high levels of endogenous free proline are not associated with osmotic adjustment and that elevated proline content in leaves, even at levels 10 times higher than normal, do not disturb the chloroplast and mitochondria ultrastructure under both irrigated and water deficit conditions.
DOI: 10.6084/m9.figshare.20012523.v1
title: Effects of high proline accumulation on chloroplast and mitochondrial ultrastructure and on osmotic adjustment in tobacco plants

description: Proline accumulates in many organisms in response to abiotic stresses, such as drought and salinity. Reports have discussed the role of proline in relation to osmotic adjustment, even though no clear-cut evidence has yet been provided demonstrating this association as a defense mechanism against drought stress in plants. However, it has been indicated that the application of exogenous proline can damage the ultrastructure of chloroplasts and mitochondria. In this study, using transgenic tobacco plants carrying a mutant p5cs gene from Vigna aconitifolia under control of the CaMV 35S promoter, we show that the high levels of endogenous proline accumulated in leaves does not contribute to the osmotic adjustment in plants under water deficit conditions. Additionally, electron microscopic observations of mitochondria and chloroplasts show that the ultrastructure of these organelles was not damaged even in the transgenic plants, with the leaves presenting the highest endogenous proline content in (100 µmol g-1 dry mass). This investigation demonstrates that in tobacco, high levels of endogenous free proline are not associated with osmotic adjustment and that elevated proline content in leaves, even at levels 10 times higher than normal, do not disturb the chloroplast and mitochondria ultrastructure under both irrigated and water deficit conditions.
DOI: 10.6084/m9.figshare.20012524
title: Impact of humic substances and nitrogen fertilising on the fruit quality and yield of custard apple

description: The custard apple (Annona squamosa L.), also known as the sugar apple, is a fruit species native to Brazil that has been poorly studied, especially in relation to the effect of humic substances on its fruit quality and yield. An experiment was conducted from December 2010 to November 2011 to evaluate the fruit quality and yield of the custard apple as a function of nitrogen fertilising and the use of humic substances. The experimental design consisted of randomised blocks, with treatments distributed in a factorial arrangement (4 x 2), using four nitrogen doses (0, 100, 175 and 250 g of N plant-1) and two humic substance applications (with and without humic substances), with four replications. The fruit yield and fruit characteristics, such as fruit mass, titratable acidity (TA), soluble solids (SS), pulp pH and SS/TA ratio, were recorded. The humic substances and the nitrogen levels significantly affected the soluble solids, titratable acidity and SS/TA ratio, while the pH pulp was only influenced by the humic substances. The humic substances promoted a quantitative increase in the fruit yield of 0.63 ton ha-1. The fruit quality and yield of the custard apple depend on the nitrogen fertiliser and the interaction of the humic substances. Nitrogen fertilising of 100 g per plant, associated with humic substances, could be recommended for use in the production of custard apples.
DOI: 10.6084/m9.figshare.20012524.v1
title: Impact of humic substances and nitrogen fertilising on the fruit quality and yield of custard apple

description: The custard apple (Annona squamosa L.), also known as the sugar apple, is a fruit species native to Brazil that has been poorly studied, especially in relation to the effect of humic substances on its fruit quality and yield. An experiment was conducted from December 2010 to November 2011 to evaluate the fruit quality and yield of the custard apple as a function of nitrogen fertilising and the use of humic substances. The experimental design consisted of randomised blocks, with treatments distributed in a factorial arrangement (4 x 2), using four nitrogen doses (0, 100, 175 and 250 g of N plant-1) and two humic substance applications (with and without humic substances), with four replications. The fruit yield and fruit characteristics, such as fruit mass, titratable acidity (TA), soluble solids (SS), pulp pH and SS/TA ratio, were recorded. The humic substances and the nitrogen levels significantly affected the soluble solids, titratable acidity and SS/TA ratio, while the pH pulp was only influenced by the humic substances. The humic substances promoted a quantitative increase in the fruit yield of 0.63 ton ha-1. The fruit quality and yield of the custard apple depend on the nitrogen fertiliser and the interaction of the humic substances. Nitrogen fertilising of 100 g per plant, associated with humic substances, could be recommended for use in the production of custard apples.
DOI: 10.6084/m9.figshare.20012527.v1
title: Lethal and sublethal effects of neem on Aphis gossypii and Cycloneda sanguinea in watermelon

description: The objective of this study was to evaluate the impact of oil extract of neem, Azadirachta indica, on the watermelon aphid Aphis gossypii and its natural enemy Cycloneda sanguinea. Toxicity bioassays were conducted with the commercial product DalNeem (1,475 g L-1 azadirachtin) at 0.0037 µg a.i. mL-1, 0.0074 µg a.i. mL-1 and 0.0148 µg a.i. mL-1, Malathion at 1 µg a.i. mL-1 and distilled water as a control treatment. The products were sprayed to watermelon leaf discs, and the insects were exposed to the product residues. The instantaneous population growth rate of A. gossypii and the survival of C. sanguinea larvae exposed to the different treatments were calculated. A decrease in the instantaneous population growth rate of A. gossypii with increasing concentrations of neem was observed, and the aphids did not reproduce on the leaf discs treated with malathion during the first 24 hours of exposure due to its rapid lethal effect on adult insects. The larvae of the predator C. sanguinea exposed to malathion survived only for 24 hours. The survival of the predator exposed to different concentrations of neem was also significantly reduced compared to the predators exposed only to water. However, laboratory experiments may overestimate the effect of neem on predators because the individuals cannot employ escape behavior caused by neem repellency.