cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12686964.v1
title: Additional file 16 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 16: GO analysis of differentially expressed genes in female and male samples with HISAT aligner. Gene enrichment analysis of genes that are more highly expressed in one sex versus the other sex for each tissue, whole blood, brain cortex, breast, liver and thyroid, when samples were aligned to a default or sex chromosome complement informed reference genome using HISAT.
DOI: 10.6084/m9.figshare.12686952
title: Additional file 14 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 14: Differentially expressed genes between the sexes that were uniquely and jointly called between reference genomes. Genes that are differentially expressed between the sexes, male XY and female XX, for whole blood, brain cortex, breast, liver, and thyroid samples. Differentially expressed genes that are uniquely called when using either the default or sex chromosome complement informed reference genome and differentially expressed genes that were jointly called between the reference genomes.
DOI: 10.6084/m9.figshare.12686943
title: Additional file 11 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 11: X chromosome regions mean and median expression values. X chromosome regions PAR1, PAR2, XTR, XDG, XAR, XCR mean and median CPM expression for male XY and female XX samples for each tissue separately when aligned to a default or sex chromosome complement informed reference genome using either HISAT and STAR. Paired t-test was used to test for significant differences in expression. XTR and XAR show a significant increase, p-value &lt;0.05, in female expression for each tissue type. XTR and XAR additionally show a significant increase, p-value &lt;0.05, in male expression for liver and thyroid. PAR2 shows a significant increase, p-value &lt;0.05, in female liver expression. Additionally reported fold change in mean expression when using a sex chromosome complement informed compared to a default reference genome. The mean fold change in expression either increased or stayed the same ranging from 2.8 to 0.999 fold increase in expression. Finally, mean male over mean female expression was reported for each X chromosome region for each tissue. Mean male over mean female expression decreases for XTR when using a sex chromosome complement reference genome for each tissue.
DOI: 10.6084/m9.figshare.12686949
title: Additional file 13 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 13: Gene expression for XY homologous genes. X chromosome expression for 26 X and Y homologous genes (AMELX, ARSD, ARSE, ARSF, CASK, GYG2, HSFX1, HSFX2, NLGN4X, OFD1, PCDH11X, PRKX, RBMX, RPS4X, SOX3, STS, TBL1X, TGIF2LX, TMSB4X, TSPYL2, USP9X, VCX, VCX2, VCX3A, VCX3B, ZFX). Difference in gene expression for when male XY and female XX samples were aligned to a default and sex chromosome complement informed reference genome for each tissue. Little to no difference in gene expression between default and sex chromosome complement informed reference genome alignment was observed for 25 of the 26 X and Y homologous genes for both male XY and female XX samples using either HISAT or STAR. The log2 fold increase in expression for PCDH11X when aligned using HISAT was 0.4, 0.28, 0.33, 0.16, and 0.16 for whole blood, brain cortex, breast, liver, and thyroid, respectively. The greatest increase in expression was observed for PCDH11X in female whole blood at a log2 fold increase of 0.4.
DOI: 10.6084/m9.figshare.12686949.v1
title: Additional file 13 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 13: Gene expression for XY homologous genes. X chromosome expression for 26 X and Y homologous genes (AMELX, ARSD, ARSE, ARSF, CASK, GYG2, HSFX1, HSFX2, NLGN4X, OFD1, PCDH11X, PRKX, RBMX, RPS4X, SOX3, STS, TBL1X, TGIF2LX, TMSB4X, TSPYL2, USP9X, VCX, VCX2, VCX3A, VCX3B, ZFX). Difference in gene expression for when male XY and female XX samples were aligned to a default and sex chromosome complement informed reference genome for each tissue. Little to no difference in gene expression between default and sex chromosome complement informed reference genome alignment was observed for 25 of the 26 X and Y homologous genes for both male XY and female XX samples using either HISAT or STAR. The log2 fold increase in expression for PCDH11X when aligned using HISAT was 0.4, 0.28, 0.33, 0.16, and 0.16 for whole blood, brain cortex, breast, liver, and thyroid, respectively. The greatest increase in expression was observed for PCDH11X in female whole blood at a log2 fold increase of 0.4.
DOI: 10.6084/m9.figshare.12686943.v1
title: Additional file 11 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

description: Additional file 11: X chromosome regions mean and median expression values. X chromosome regions PAR1, PAR2, XTR, XDG, XAR, XCR mean and median CPM expression for male XY and female XX samples for each tissue separately when aligned to a default or sex chromosome complement informed reference genome using either HISAT and STAR. Paired t-test was used to test for significant differences in expression. XTR and XAR show a significant increase, p-value &lt;0.05, in female expression for each tissue type. XTR and XAR additionally show a significant increase, p-value &lt;0.05, in male expression for liver and thyroid. PAR2 shows a significant increase, p-value &lt;0.05, in female liver expression. Additionally reported fold change in mean expression when using a sex chromosome complement informed compared to a default reference genome. The mean fold change in expression either increased or stayed the same ranging from 2.8 to 0.999 fold increase in expression. Finally, mean male over mean female expression was reported for each X chromosome region for each tissue. Mean male over mean female expression decreases for XTR when using a sex chromosome complement reference genome for each tissue.
DOI: 10.6084/m9.figshare.12686904
title: Mathematical model results from Mathematical models and deep learning for predicting the number of individuals reported to be infected with SARS-CoV-2

description: Analytic spreadsheets of our fitting results using the three mathematical models and BiLSTM for Italy, Spain, France and Germany.
DOI: 10.6084/m9.figshare.12686624
title: Supplementary Material for: Premature Stroke Secondary to Severe Hypertension Results from Liddle Syndrome Caused by a Novel SCNN1B Mutation

description: <b><i>Introduction:</i></b> Liddle syndrome (LS), an autosomal dominant and inherited monogenic hypertension syndrome caused by pathogenic mutations in the epithelial sodium channel (ENaC) genes <i>SCNN1A,</i> <i>SCNN1B</i>, and <i>SCNN1G</i>. <b><i>Objective:</i></b> This study was designed to identify a novel <i>SCNN1B</i> missense mutation in a Chinese family with a history of stroke, and to confirm that the identified mutation is responsible for LS in this family. <b><i>Methods:</i></b> DNA samples were collected from the proband and 11 additional relatives. Next-generation sequencing was performed in the proband to find candidate variants. In order to exclude genetic polymorphism, the candidate variant<i></i>in<i> SCNN1B</i> was verified in other family members, 100 hypertensives, and 100 healthy controls by Sanger sequencing. <b><i>Results:</i></b> Genetic testing revealed<b><i></i></b>a novel and rare heterozygous variant in <i>SCNN1B</i> in the proband. This variant resulted in a substitution of threonine instead of proline at codon 617, altering the PY motif of β-ENaC. The identified mutation was only verified in 5 relatives. In silico analyses indicated that this variant was highly pathogenic. In this family, phenotypic heterogeneity was present among 6 LS patients. Tailored medicine with amiloride was effective in controlling hypertension and improving the serum potassium concentration in patients with LS. <b><i>Conclusions:</i></b><i></i>We identified a novel <i>SCNN1B</i> mutation (c.1849C&gt;A) in a family affected by LS. Patients with LS, especially those with severe hypertension, should be alert for the occurrence of premature stroke. Timely diagnosis using genetic testing and tailored treatment with amiloride can help LS patients to avoid severe complications.
DOI: 10.6084/m9.figshare.12686624.v1
title: Supplementary Material for: Premature Stroke Secondary to Severe Hypertension Results from Liddle Syndrome Caused by a Novel SCNN1B Mutation

description: <b><i>Introduction:</i></b> Liddle syndrome (LS), an autosomal dominant and inherited monogenic hypertension syndrome caused by pathogenic mutations in the epithelial sodium channel (ENaC) genes <i>SCNN1A,</i> <i>SCNN1B</i>, and <i>SCNN1G</i>. <b><i>Objective:</i></b> This study was designed to identify a novel <i>SCNN1B</i> missense mutation in a Chinese family with a history of stroke, and to confirm that the identified mutation is responsible for LS in this family. <b><i>Methods:</i></b> DNA samples were collected from the proband and 11 additional relatives. Next-generation sequencing was performed in the proband to find candidate variants. In order to exclude genetic polymorphism, the candidate variant<i></i>in<i> SCNN1B</i> was verified in other family members, 100 hypertensives, and 100 healthy controls by Sanger sequencing. <b><i>Results:</i></b> Genetic testing revealed<b><i></i></b>a novel and rare heterozygous variant in <i>SCNN1B</i> in the proband. This variant resulted in a substitution of threonine instead of proline at codon 617, altering the PY motif of β-ENaC. The identified mutation was only verified in 5 relatives. In silico analyses indicated that this variant was highly pathogenic. In this family, phenotypic heterogeneity was present among 6 LS patients. Tailored medicine with amiloride was effective in controlling hypertension and improving the serum potassium concentration in patients with LS. <b><i>Conclusions:</i></b><i></i>We identified a novel <i>SCNN1B</i> mutation (c.1849C&gt;A) in a family affected by LS. Patients with LS, especially those with severe hypertension, should be alert for the occurrence of premature stroke. Timely diagnosis using genetic testing and tailored treatment with amiloride can help LS patients to avoid severe complications.
DOI: 10.6084/m9.figshare.12686904.v2
title: Mathematical model results from Mathematical models and deep learning for predicting the number of individuals reported to be infected with SARS-CoV-2

description: Analytic spreadsheets of our fitting results using the three mathematical models and BiLSTM for Italy, Spain, France and Germany.
DOI: 10.6084/m9.figshare.12686904.v1
title: Mathematical model results from Mathematical models and deep learning for predicting the number of individuals reported to be infected with SARS-CoV-2

description: Analytic spreadsheets of our fitting results using the three mathematical models and BiLSTM for Italy, Spain, France and Germany.
DOI: 10.6084/m9.figshare.12686099
title: LDPET

description: Study of low-dose PET image recovery using supervised learning with CycleGAN<br>
DOI: 10.6084/m9.figshare.12686045
title: Appendix 1 - List of useful plants used by the community of Peregrinos, municipality of Solano-Caquetá.docx

description: Lista de plantas útiles utilizadas por la comunidad de Peregrinos, municipio de Solano-Caquetá
DOI: 10.6084/m9.figshare.12686045.v1
title: Appendix 1 - List of useful plants used by the community of Peregrinos, municipality of Solano-Caquetá.docx

description: Lista de plantas útiles utilizadas por la comunidad de Peregrinos, municipio de Solano-Caquetá
DOI: 10.6084/m9.figshare.12685985
title: Top Coffee and Car Twitter Brand Content Co-creation

description: A 3-month sample of brand and consumer tweets from Top brands on Twitter. This data contains marketing messages, metadata in the form of eWOM outcomes (Like, Share, Comment) and an explicit structure extracted from content which is based on value propositions. Brand and consumer value propositions, sentiments and eWOM outcomes can then be quantitatively analysed for underlying statistical relationships
DOI: 10.6084/m9.figshare.12685967
title: The Questionnaire .pdf

description: The Questionnaire modified and translated from Global Youth Tobacco Survey (GYTS).
DOI: 10.6084/m9.figshare.12685958
title: Value Taxonomy Corpus.docx

description: This corpus which has been tested using bi-directional marketing tweets between the brand-consumer dyad contains 15 value proposition dimensions used to capture exact marketing semantics and additionally contains two sentiment categories which are derived from the LIWC2007 dictionary
DOI: 10.6084/m9.figshare.12685967.v1
title: The Questionnaire .pdf

description: The Questionnaire modified and translated from Global Youth Tobacco Survey (GYTS).
DOI: 10.6084/m9.figshare.12685947
title: Mathematica source program from Microbial material cycling, energetic constraints and ecosystem expansion in subsurface ecosystems

description: Example of niche calculation at varying k2 parameter.
DOI: 10.6084/m9.figshare.12685947.v1
title: Mathematica source program from Microbial material cycling, energetic constraints and ecosystem expansion in subsurface ecosystems

description: Example of niche calculation at varying k2 parameter.
DOI: 10.6084/m9.figshare.12685958.v1
title: Value Taxonomy Corpus.docx

description: This corpus which has been tested using bi-directional marketing tweets between the brand-consumer dyad contains 15 value proposition dimensions used to capture exact marketing semantics and additionally contains two sentiment categories which are derived from the LIWC2007 dictionary
DOI: 10.6084/m9.figshare.12685913
title: Jiang Xisha coral data.xlsx

description: The data table include the coral P/Ca ratio in the Xisha Islands ,northern South China Sea.
DOI: 10.6084/m9.figshare.12685913.v1
title: Jiang Xisha coral data.xlsx

description: The data table include the coral P/Ca ratio in the Xisha Islands ,northern South China Sea.
DOI: 10.6084/m9.figshare.12685883
title: Experimental data for the paper "Robotic Untangling of Herbs and Salads with Parallel Gripper".

description: This data supports the work done in the paper titled "Robotic Untangling of Herbs and Salads with Parallel Gripper" accepted for publication in the Proceedings of the 2020 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2020). Readme file is provided.<br><br>The data folder consists of 5 csv files. Files follow the below naming convention.<br> "purpose"_"material".csv <br> A). train_plastc.csv -- training data as collected picking plastic herbs. B). test_plastic.csv -- testing data as collected picking plastic herbs using predicted gripper width. C). train_wild_rocket.csv -- training data as collected picking wild rocket. D). test_wild_rocket.csv -- testing data as collected picking wild rocket using predicted gripper width. E). test_parsley.csv -- testing data as collected picking flat leaf parsley using predicted gripper width. <br> <br>Column details -----------------<br>1. train data<br> columns: gripper_width(mm) -- represents the gripper aperture width in mm. weight_picked(g) -- represents the weight picked in grams. type -- represents the method used. "Normal" and "Extended" represents GI and spread-and-pick method. 2. test data<br> columns: weight_picked_GI(g) -- represents the picked weight following GI method. weight_picked_Spread_Pick(g) -- represents the picked weight following spread and pick method. target_weight(g) -- represents the target weight. predicted_griper_width(mm) -- represents the predicted gripper width as used for picking. <br>
DOI: 10.25380/iastate.12685775.v1
title: Data from "Catalytic Upcycling of High Density Polyethylene via a Processive Mechanism"

description: GC traces of liquid phase products of hydrogenolysis of polyethylenes, under a series of conditions with supported platinum nanoparticle catalysts and controls;GPC traces of residual polymeric materials after catalytic conversions;Characterization of catalytic materials;DFT calculations of hexane adsorption onto model catalyst surfaces;NMR spectra, including EXSY spectra, characterizing surface-polymer interactions, polymer conformations, and dynamics
DOI: 10.6084/m9.figshare.12685883.v1
title: Experimental data --- Robotic Untangling of Herbs and Salads with Parallel Gripper

description: This data supports the work done in the paper titled "Robotic Untangling of Herbs and Salads with Parallel Gripper" accepted for publication in the Proceedings of the 2020 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2020). Readme file is provided.<br><br>The data folder consists of 5 csv files. Files follow the below naming convention.<br> "purpose"_"material".csv <br> A). train_plastc.csv -- training data as collected picking plastic herbs. B). test_plastic.csv -- testing data as collected picking plastic herbs using predicted gripper width. C). train_wild_rocket.csv -- training data as collected picking wild rocket. D). test_wild_rocket.csv -- testing data as collected picking wild rocket using predicted gripper width. E). test_parsley.csv -- testing data as collected picking flat leaf parsley using predicted gripper width. <br> <br>Column details -----------------<br>1. train data<br> columns: gripper_width(mm) -- represents the gripper aperture width in mm. weight_picked(g) -- represents the weight picked in grams. type -- represents the method used. "Normal" and "Extended" represents GI and spread-and-pick method. 2. test data<br> columns: weight_picked_GI(g) -- represents the picked weight following GI method. weight_picked_Spread_Pick(g) -- represents the picked weight following spread and pick method. target_weight(g) -- represents the target weight. predicted_griper_width(mm) -- represents the predicted gripper width as used for picking. <br>
DOI: 10.6084/m9.figshare.12685745
title: Construction and psychometric properties of the Male Gender Dysphoria Scale

description: This data was used to create and validate the Male Gender Dysphoria Scale, through items adapted exclusively to peruvian youth and adults of the male sex assigned at birth, ranging from 18 to 40 years of age. Through an exploratory factorial analysis was found the Cronbach’s alpha and Mc’Donald’s omega coefficient for the global scale. It was concluded that the scale to diagnose gender dysphoria; male to female version shows adequate internal consistency and construct validity.
DOI: 10.6084/m9.figshare.12685745.v1
title: Construction and psychometric properties of the Male Gender Dysphoria Scale

description: This data was used to create and validate the Male Gender Dysphoria Scale, through items adapted exclusively to peruvian youth and adults of the male sex assigned at birth, ranging from 18 to 40 years of age. Through an exploratory factorial analysis was found the Cronbach’s alpha and Mc’Donald’s omega coefficient for the global scale. It was concluded that the scale to diagnose gender dysphoria; male to female version shows adequate internal consistency and construct validity.
DOI: 10.6084/m9.figshare.12685610
title: List of sources of population density data

description: Population density data sources from locations reporting COVID-19 cases in the American continent
DOI: 10.6084/m9.figshare.12685523
title: COVID-19 raw epidemiological data of Argentina, Bolivia, Colombia, Ecuador and Peru

description: Raw daily epidemiological data of COVID-19 cases in Argentina, Bolivia, Colombia, Ecuador, and Peru by May 25, 2020
DOI: 10.6084/m9.figshare.12685550
title: search_results

description: search results for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12685550.v1
title: search_results

description: search results for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12685487
title: anderson.naive

description: search results folder for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12685481
title: anderson_studies.rda

description: dataset for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12685487.v1
title: anderson.naive

description: search results folder for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12685523.v1
title: COVID-19 raw epidemiological data of Argentina, Bolivia, Colombia, Ecuador and Peru

description: Raw daily epidemiological data of COVID-19 cases in Argentina, Bolivia, Colombia, Ecuador, and Peru by May 25, 2020
DOI: 10.6084/m9.figshare.12685472
title: anderson_refs.rda

description: dataset for Library Carpentry litsearchr lesson
DOI: 10.6084/m9.figshare.12685478
title: COVID-19 incidence data.xlsx

description: Geographical and altitudina data of COVID-19 incidence in the American Contitnent by May 25, 2020
DOI: 10.6084/m9.figshare.12859895
title: Knowledge, attitude and practice towards stroke and thrombolysis among students preparing for undergraduate medical entrance examination in Kathmandu, Nepal

description: SPSS main data entry sheet
DOI: 10.6084/m9.figshare.12685481.v1
title: anderson_studies.rda

description: dataset for Library Carpentry lesson
DOI: 10.6084/m9.figshare.12859895.v1
title: Knowledge, attitude and practice towards stroke and thrombolysis among students preparing for undergraduate medical entrance examination in Kathmandu, Nepal

description: SPSS main data entry sheet
DOI: 10.6084/m9.figshare.12685472.v1
title: anderson_refs.rda

description: dataset for Library Carpentry litsearchr lesson
DOI: 10.6084/m9.figshare.12685463
title: Appendix 1 - The role of cytogenetic variation in Akodon cursor species complex speciation (Rodentia: Sigmodontinae)

description: Gazetter of Brazilian collection localities for <i>Akodon</i> karyotyped specimens.<br>
DOI: 10.6084/m9.figshare.12685463.v1
title: Appendix 1 - The role of cytogenetic variation in Akodon cursor species complex speciation (Rodentia: Sigmodontinae)

description: Gazetter of Brazilian collection localities for <i>Akodon</i> karyotyped specimens.<br>
DOI: 10.6084/m9.figshare.12683954
title: InteracDome_v0.3

description: A static mirror of the files downloadable at https://interacdome.princeton.edu/.<br>I am not the author of this dataset. I am hosting this public resource for the purpose of creating a static (unchanging) link from which the files can be permanently accessed with. If you use this dataset, cite the authors and study:<br>Kobren, S.N. and Singh, M. (2018) "Systematic domain-based aggregation of protein structures highlights DNA-, RNA-, and other ligand-binding positions." Nucleic Acids Res, 47(2): 582–593. doi: 10.1093/nar/gky1224.InteracDome Web Server<br><br>
DOI: 10.6084/m9.figshare.12683852
title: disintegrating bullet survey

description: disintegrating bullet survey
DOI: 10.6084/m9.figshare.12683954.v1
title: InteracDome_v0.3

description: A static mirror of the files downloadable at https://interacdome.princeton.edu/.<br>I am not the author of this dataset. I am hosting this public resource for the purpose of creating a static (unchanging) link from which the files can be permanently accessed with. If you use this dataset, cite the authors and study:<br>Kobren, S.N. and Singh, M. (2018) "Systematic domain-based aggregation of protein structures highlights DNA-, RNA-, and other ligand-binding positions." Nucleic Acids Res, 47(2): 582–593. doi: 10.1093/nar/gky1224.InteracDome Web Server<br><br>
DOI: 10.6084/m9.figshare.12683852.v1
title: disintegrating bullet survey

description: disintegrating bullet survey