cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/5ee057a8fe422
title: Data from: Body size determines eyespot size and presence in coral reef fishes

description: <p>This project aimed to determine how body size shapes the size and presence of eyespots in coral reef fishes. Eyespots are a marking that resembles the vertebrate eye. The first dataset contains both linear and area measurements of the eye and eyespot to analyse any relationships that may be present between these two features. The second dataset contains length measurements of fishes from a public image database (the Smithsonian Institutes Division of Fishes Collection). The species included are eyespot-bearing species, but many only possess this marking at various points during their ontongeny. Therefore, the dataset contains measurements of inidividuals that possess an eyespot, as well as length measurements of individuals that do not. This was used to analyze the size distributions of eyespot-bearing and eyespot-lacking individuals, as well as calculating the likelihood of having an eyespot as bodysize increases. Furthermore, this dataset is accompanied by a .tre file. This is a phylogenetic tree that was used to account for non-independence between samples in the eye-eyespot regressions. It can be viewed by using the software '<a href="http://tree.bio.ed.ac.uk/software/figtree/">FigTree</a>' or by using the 'APE' or 'phytools' libraries in R.</p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p>
DOI: 10.15468/dl.rbyt7n
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((142.943651 -36.847356, 142.945897 -36.847356, 142.945897 -36.84511, 142.948143 -36.84511, 142.948143 -36.842865, 142.945897 -36.842865, 142.945897 -36.833881, 142.943651 -36.833881, 142.943651 -36.838373, 142.941406 -36.838373, 142.941406 -36.840619, 142.93916 -36.840619, 142.93916 -36.842865, 142.943651 -36.842865, 142.943651 -36.847356)), ((142.943651 -36.847356, 142.93916 -36.847356, 142.93916 -36.851848, 142.943651 -36.851848, 142.943651 -36.847356)), ((142.948143 -36.842865, 142.952635 -36.842865, 142.952635 -36.838373, 142.948143 -36.838373, 142.948143 -36.842865)), ((142.952635 -36.838373, 142.95488 -36.838373, 142.95488 -36.836127, 142.952635 -36.836127, 142.952635 -36.838373)))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075352-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/28xb-cy60
title: Proboscis Extension Reflex assay responses of Apis mellifera and Apis cerana to sucrose solutions containing Nosema ceranae spores

description: <p>This experiment was conducted to determine if Apis cerana, which shares an evolutionary history with Nosema ceranae, would be more likely to detect and avoid the pathogen Nosema ceranae than A. mellifera, which is a novel host of the pathogen. The dataset shows individual responses of 106 A. mellifera workers and 96 A. cerana workers to a series of nine Proboscis Extension Reflex assays in which the bees were offered either a sucrose-only solution or a sucrose solution containing Nosema ceranae spores.  The concentration of the spore-containing solutions progressively increased and alternated with the sucrose-only solutions. </p>
<p>Software/equipment used to create/collect the data: Microsoft Excel as part of Microsoft Office Professional 2016</p>
<p>Software/equipment used to manipulate/analyse the data: R version 3.6.1</p>
DOI: 10.4225/28/5a27312c231cc
title: Raw data: fish vs plastic experiment
DOI: 10.25903/5f4f18fd61010
title: A review of historical earthquakes in Queensland utilising the Trove Newspaper Archive as a primary source

description: <p>Appendix 1 of, and the compiled datasets and geographical information systems workspaces associated with the publication A review of historical earthquakes in Queensland utilising the Trove Newspaper Archive as a primary source published in the Australian Journal of Earth Sciences.  </p>
DOI: 10.25903/5bab15c4ce9f5
title: Water quality and fringing reef condition at Putri Menjangan, West Bali, Indonesia in May 2016

description: <p>This data represents an assessment of nutrient discharge from a shrimp farm onto the adjacent fringing reef in Pejarakan village in West Bali Indonesia.</p><p>Part 1 provides water quality test results from the farm's outfall pipe, along the discharge channel and onto the adjacent inner reef flat area. Tests were conducted once a week for 3 weeks in April - May 2016, with one replicate per test site.Tests were for ammonia-nitrogen (NH4+-N), nitrate-nitrogen (NO3-N), nitrite-nitrogen (NO2-N), dissolved inorganic phosphorus (DIP), and chlorophyll a (Chl a).</p><p>Part 2: Surveys of coral reef benthos cover and condition were conducted along the fringing reef system of Pejarakan village in West Bali Indonesia. The area known as Putri Menjangan is a proposed MPA location, facilitated by the community group Nature Conservation Forum (VCF). Benthic surveys of substrate cover included records of coral bleaching, coral disease, bleaching, generic richness and cover per genus, COTS, Drupella and debris. Five sites along the reef front were surveyed with 3 replicate transects in 3 reef zones. Zones were the reef crest, middle reef flat and inner reef flat.</p>
DOI: 10.4225/28/58f41e19051c9
title: Risky business: how elevated CO2 and energetic resources affect anti-predator behaviour in a reef fish
DOI: 10.25903/5efad601a0795
title: Data from: Russ GR et al “Coral cover a stronger driver of reef fish trophic biomass than fishing”. Ecological Applications.

description: <p>Fish Data: Mean Biomass (kg/6000 square metres) from six 1000 square metre replicates of 13 different trophic groups of coral reef fish on reef slopes at Apo and Sumilon Islands Philippines, 1983-2014. Underwater Visual Census by Garry R. Russ, JCU.</p><p>Benthic Data: Mean % cover of Hard Coral (HC) and Dead Substratum (DS) associated with mean reef fish biomass (above) on reef slopes of Apo and Sumilon Islands Philippines, 1983-2014. Collected by Garry R. Russ, JCU.</p><p>The full methodology will be made available in the publication shown in the Related Publications link below. </p>
DOI: 10.25903/5e61a7f08ae39
title: Data from: Meeting fisheries, ecosystem function, and biodiversity goals in a human dominated world

description: <p>This repository contains the data to implement the analyses from Cinner et al. 2020  "Meeting fisheries, ecosystem function, and biodiversity goals in a human dominated world". If you use this data please cite the paper accordingly. </p>
DOI: 10.4225/28/58901ccaf2686
title: Data from: Biogeographic patterns in major marine realms: function not taxonomy unites fish assemblages in reef, seagrass and mangrove systems
DOI: 10.4225/28/55b58e6c46947
title: Physiological determinants of tolerance to climatic extremes in small ectotherms
DOI: 10.4225/28/56dd0e93c655d
title: The effects of temperature on larval anemonefish metabolic and digestion rates
DOI: 10.25903/5cd265eb0a405
title: Data from 'Historical biogeography of herbivorous coral reef fishes: the formation of an Atlantic fauna'

description: <p>This entry refers to Siqueira, Bellwood & Cowman 'Historical biogeography of herbivorous coral reef fishes: the formation of an Atlantic fauna' published in the Journal of Biogeography. It encompasses a dataset with the geographical distribution of herbivorous fish species; Phylogenetic trees for the herbivorus reef fish groups; and R scripts to reproduce the biogeographical models and reconstructions.</p>
DOI: 10.25903/b5j9-sm38
title: Data and Questionnaire for Singaporean Malays and Chinese: Differences in Levels of Emotion Suppression

description: <p><strong>Background: </strong>Existing research comparing expressive suppression levels across cultural groups have largely been conducted in countries where there is a very strong dominant majority culture. There is also a lack of empirical research on the differences in levels of expressive suppression between different Asian cultures. Investigating levels of expressive suppression across cultural groups is important, as different groups have been found to display different expressive suppression levels, which has different effects on wellbeing for different cultural groups. The data collected allows for comparison of expressive suppression levels between Chinese and Malay individuals (2 Asian cultures) in Singapore (a multicultural country where maintenance of all cultural groups' heritage are equally promoted).</p>
<p><strong>This data record contains:</strong></p>
<ul>
<li>Raw Qualtrics data: Responses downloaded from Qualtrics, with identifying / irrelevant information removed</li>
<li>Processed data: Responses with incomplete responses removed, negatively keyed questions reverse coded</li>
<li>Questionnaire: Questions included in online survey and debriefing message included at the end of the survey </li>
</ul>
<p><strong>Data collection: </strong></p>
<ul>
<li>SONA & personal contacts, snowball method</li>
<li>Participants completed online Qualtrics questionnaire</li>
<li>Participant inclusion criteria: Singaporean citizen / PR, identify as either Chinese or Malay, aged 17 or 18 and above for university and non-university students respectively</li>
</ul>
<p><strong>Data analysis:</strong></p>
<ul>
<li>Data cleaning: incomplete responses removed, negatively keyed questions reverse coded</li>
<li>Data analysis software: SPSS (ANOVA, reliability analysis, descriptive statistics)</li>
</ul>
<p> </p>
DOI: 10.25903/5dcb8b11aa86b
title: Data from: Lönnstedt OM, McCormick MI, Chivers DP, Ferrari MCO (2014) Habitat degradation is threatening reef replenishment by making fish fearless. J Anim Ecol 83:1178–1185

description: <p>Abstract [Related Publication]: 1. Habitat degradation is one of the ‘Big Five’ drivers of biodiversity loss. However, the mechanisms responsible for this progressive loss of biodiversity are poorly understood. In marine ecosystems, corals play the role of ecosystem engineers, providing essential habitat for hundreds of thousands of species and hence their health is crucial to the stability of the whole ecosystem.</p><p>2. Climate change is causing coral bleaching and degradation, and while this has been known for a while, little do we know about the cascading consequences of these events on the complex interrelationships between predators and their prey. The goal of our study was to investigate, under completely natural conditions, the effect of coral degradation on predator–prey interactions.</p><p>3. Settlement stage ambon damselfish (Pomacentrus amboinensis), a common tropical fish, were released on patches of healthy or dead corals, and their behaviours in situ were measured, along with their response to injured conspecific cues, a common risk indicator. This study also explored the effect of habitat degradation on natural levels of mortality at a critical life-history transition.</p><p>4. We found that juveniles in dead corals displayed risk-prone behaviours, sitting further away and higher up on the reef patch, and failed to respond to predation cues, compared to those on live coral patches. In addition, in situ survival experiments over 48 h indicated that juveniles on dead coral habitats had a 75% increase in predation-related mortality, compared to fish released on live, healthy coral habitats.</p><p>5. Our results provide the first of many potential mechanisms through which habitat degradation can impact the relationship between prey and predators in the coral reef ecosystem. As the proportion of dead coral increases, the recruitment and replenishment of coral reef fishes will be threatened, and so will the level of diversity in these biodiversity hot spots.</p><p>The dataset consists of a spreadsheet with 3 worksheets:</p><ul><li>Figure 1 data</li><li>Field experiment 1 and Figure 2 data</li><li>Survival data</li></ul>
DOI: 10.25903/5e8aaceef5f49
title: Data from: Greater multihabitat use in Caribbean fishes when compared to their Great Barrier Reef counterparts

description: <p>This dataset contains fish counts on coral reefs, seagrass beds, and mangrove forests using a standardised surveying method. Surveys were conducted at three locations in the Caribbean (Grand Cayman, Bonaire, and St. Croix) and two on the Great Barrier Reef (the Palm Island and Lizard Island). The objective of collecting this data was to compare the overlap in fish assemblages between these habitats to ask if it differed depending on the realm (Caribbean and GBR). Furthermore, we assessed nursery function as the dataset contains fish counts segregated by two different size classes (> and < 10cm total length).</p>
DOI: 10.25903/5t5n-dr58
title: Data from: The interaction between giant tortoises and agriculture on the Galapagos Islands  

description: <p>This data record contains all data associated with the PhD thesis: The Interaction between giant tortoises and agriculture on the Galapagos Islands. Data were collected on the movement, behaviour, and habitat use of two species of critically endangered giant tortoises using agricultural land on Santa Cruz Island in the Galapagos to better understand their use of farmland and support their longterm conservation. Data on tortoise movement were collected with custom made GPS devises attached to tortoises carapaces for various time periods from 2009 - 2019 as part of the Giant Tortoise Movement Ecology programme. To understand tortoise space use, continuous time movement models were used to determine tortoise utilisation distributions and paired with farm extent to determine farm revisits and spatial overlap. To investigate the impact of farmland vegetation and infrastructure on tortoise movement (from 2014 to 2020)  and habitat preferences tortoise movement data was also used with satellite data on vegetation and roads and field collected data on fence structure and ponds. These data were modelled with integrated step selection functions to determine tortoise response to vegetation, roads, fences and ponds within the agricultural area.  Field collected data on tortoise density on farms were collected from 2019 to 2020 using point coints along with habitat structure characteristics to determine habitat preferences in different land-use types using zero inflated negative binomial models. To understand tortoise activity patterns in farms, tortoise behaviour was observed in the field  in 2019 with a pre-programmed ethogram to record patterns of walking, eating, and resting while in the agricultural area. Data were also collected during the observation on the thermal landscape and vegetation characteristics. Using Dirichlet regressions the influence of temperature, vegetation, and land-use type on tortoise activity patterns was determined. All analyses were conducted in R statistical software. </p>
DOI: 10.4225/28/57b2b2198bcbf
title: Supplementary rotation file and feature collections to Holm et al., 2016
DOI: 10.25903/9ws3-x153
title: Data: Emotional Intelligence, Situation Awareness and Safety Performance: Pilots’ Career Development

description: <p><strong>Background: </strong>This study has two primary objectives: first, it aims to investigate the potential positive influence of EI on safety performance, especially in high-risk occupations like aviation, and to provide valuable insights that can be applied to enhance safety. Second, it seeks to provide empirical evidence regarding the variability of EI&rsquo;s impact on safety performance by  exploring mediation pathways and context factors to offer practical suggestions that can be applied to enhance employee development in these critical industries. The Ethics approval number for this study is H6823.</p>
<p><strong>Methods: </strong> Both paper-based and online questionnaires were employed to collect data to accommodate participants' preferences. The questionnaire employed in this study consisted of two rounds. These two-wave surveys were implemented between May 2017 and September 2017. The thesis consists of three studies. The participants for Study 1 were full-time pilot trainees from two flight training schools in mainland China. For Study 2 and Study 3, the participants were full-time pilots working in Chinese airline companies. </p>
<p><strong>This data record contains:</strong></p>
<p>1 x Excel (.xlsx) file containing a comprehensive overview of the variables and measurements utilized in this thesis.</p>
<p>2 x Excel (.xlsx) files containing the raw data collected from surveys administered at flight training schools and airline companies.</p>
<p>Files are also available in Open Document Format (.ods)</p>
<p>--//--</p>
<p>Software used to collect the data: Qualtric.</p>
DOI: 10.4225/28/588ebfb75ab2f
title: Identified proteins in the IgE-reactive spots
DOI: 10.4225/28/586c8ca7f09a5
title: Limited capacity for developmental thermal acclimation in three tropical wrasses
DOI: 10.4225/28/5837bc6084d68
title: Microbiome of the soft coral Lobophytum pauciflorum
DOI: 10.25903/5d3fd8a0a957c
title: Dataset for: Defining the larval habitat: abiotic, biological and chemical parameters associated with Anopheles farauti productivity 

description: <p>Larval surveys were conducted during January and August 2016 near villages in Western Province (Jack Harbour, Saeragi, Kinamara, and New Mala; -8.0° S, 157.0° E) and Central Province (Haleta; − 9°5′ 56″ S, 160°6′ 56″ E) of the Solomon Island. The data from the entire set of experiments has been archived into one database.</p>
DOI: 10.25903/5da572d340d78
title: Graba-Landry PhD Chapter 3: Impaired growth and survival of tropical macroalgae (Sargassum spp) at elevated temperatures

description: <p>Data investigating the: </p><p>a) relative growth rate </p><p>b) physical toughness </p><p>c) nitrogen (% DW) </p><p>d) susceptability to herbivory </p><p>of adult <em>Sargassum</em> thalli grown in different temperature treatments. </p><p>We also investigated the effect of temperature to </p><p>a) survival </p><p>b) relative growth rate </p><p>to <em>Sargassum swartzii</em> propagules </p>
DOI: 10.4225/28/5a0d1ac51a005
title: White blood cell profile data for Chapter 3 of PhD thesis: Thermal thresholds in the amphibian disease chytridiomycosis
DOI: 10.25903/5b8cac554a2b0
title: Data from: McCormick, Fakan, Nedelec & Allan - Effects of boat noise on fish fast-start escape response depend on engine type

description: <p>Dataset for manuscript.</p><p>Abstract [Related Publication]: Vessel noise represents a relatively recent but rapidly increasing form of pollution, which affects the many organisms that use sound to inform their behavioural decisions. Recent research shows that anthropogenic noise can lead to reduced responsiveness to risk and higher mortality. The current laboratory experiment determined whether the playback of noise from motorboats powered by two- or four-stroke outboard engines affected the kinematics of the fast-start response in a juvenile coral reef fish, and the time scale over which the effects may occur. Results show that the two engine types produce slightly different sound spectra, which influence fish differently. Playback of 2-stroke engines had the greatest effect on activity, but only for a brief period (45s). While noise from 4-stroke outboard engines affected fast-start kinematics, they had half the impact of noise from 2-stroke engines. Two-stroke engine noise affected routine swimming more than 4-stroke engines, while 4-stroke noise had a greater effect on the speed at which fish responded to a startle. Evidence suggests that the source of the noise pollution will have a major influence on the way marine organisms will respond, and this gives managers an important tool whereby they may reduce the effects of noise pollution on protected communities.   </p><p>Keywords: Acoustics; boat noise; coral reef fish; fast-start kinematics; outboard engines; predator-prey interactions</p><p>Spreadsheet contains 2 sheets:</p><ol><li>Latency, routine swimming etc. </li><li>Routine swimming in 15s blocks</li></ol><p> The full methodology is available in the Open Access publication from the Related Publications link below.</p><p> </p>
DOI: 10.4225/28/5a827b8b73b03
title: Data from: The role of the reef flat in coral reef trophodynamics: past, present and future
DOI: 10.4225/28/5923bfed71f8d
title: Diel CO2 cycles reduce severity of behavioural abnormalities in coral reef fish under ocean acidification
DOI: 10.25903/5db68cc96296b
title: Elevated CO2 and heatwave conditions affect the aerobic and swimming performance of juvenile Australasian snapper

description: <p>Here, we used a fully cross-factored experiment to test the effects of simulated heatwave conditions (+4°C) and elevated CO2 (1000 µatm) on the aerobic physiology and swimming performance of juvenile Australasian snapper, Chrysophrys auratus, an ecologically and economically important mesopredatory fish. We collected the MO2 Rest, MO2 Max, Aerobic scope and U crit.</p><p>The full methodology is available in the publication shown in the Related Publications link below.</p><p> </p>
DOI: 10.15468/dl.xdkn8f
title: Occurrence Download

description: A dataset containing 6665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sri Lanka",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Plantae",
 "Year 2008-2024"
 ]
}

 The dataset includes 6665 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075353-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyxz54
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.830742 -36.847356, 143.830742 -36.851848, 143.835234 -36.851848, 143.835234 -36.847356, 143.830742 -36.847356))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075354-240626123714530/datasets/export for details.
DOI: 10.4225/28/5aa74ecb58f42
title: Predatory strategies and behaviours in cephalopods are altered by elevated CO2
DOI: 10.25903/5bd2ae932a347
title: Data from: Colour pattern divergence in reef fish species is rapid and driven by both range overlap and range symmetry

description: <p>This is the data associated with the publication titled: "<strong>Colour pattern divergence in reef fish species is rapid and driven by both range overlap and range symmetry</strong>"</p><p>This dataset contains values quantifying the colour pattern difference between butterflyfish (Family:Chaetodontidae, Genus:<em>Chaetodon</em>) species pairs. This was measured using an objective digital imaging technique that quntifies colour and pattern. Additionally, this datset contians the estimated age of each species pair, the amount of geographic range overlap between pair members, as well as relative difference in the size of each pair members geographic range.</p><p> </p>