cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7z8w2c3bt8.1
title: LASER SCANNER versus DRONE PHOTOGRAMMETRY data

description: The following data contain most of the informations from photos, 3D photogrammetry and laser scanned files. All photographies (10 m, 20m and 40m flights) from the Mavic Pro drone that generate the 3D Zephyr models through photogrammetry for crime scene registration (.zep). All Trimble X7 laser scanner data (.e57)  from the six captures also can be found at LS X7 folder.  This models were used for comparation with the 3D point of cloud generated from a Laser Scanner Trimble X7 acquired at the same place. Using ANOVA for statistical comparison of the results from know distances (compared with a total station), no significant differences were found. Thus, drone photogrammetry can be indicated as a cheaper, low time consuming and powerful tool for crime scene registration.
DOI: 10.17632/37kyww3gxj.1
title: Codes and dataset for "An efficient Balanced Teaching-Learning-Based optimization algorithm with Individual restarting strategy for solving global optimization problems"

description: These dataset and codes correspond to "An efficient Balanced Teaching-Learning-Based optimization algorithm with Individual restarting strategy for solving global optimization problems" paper published in the Information Science journal and include:
1- BTLBO algorithm code .
2- Codes for running BTLBO.
3- Input data.
4-IEEE CEC14 benchmark suits.

Please cite the paper as:

Ahmad Taheri, Keyvan RahimiZadeh, Ravipudi Venkata Rao,
An efficient Balanced Teaching-Learning-Based optimization algorithm with Individual restarting strategy for solving global optimization problems,
Information Sciences,
Volume 576,
2021,
Pages 68-104,
ISSN 0020-0255,
https://doi.org/10.1016/j.ins.2021.06.064.
(https://www.sciencedirect.com/science/article/pii/S0020025521006551)
DOI: 10.17632/22jwmgvjcr.2
title: Hydrolysable microplastics in soil – low biodegradation but formation of a specific microbial habitat?

description: We provide reproducible R-codes and data sets accompanying the research article "Hydrolysable microplastics in soil - low biodegradation but formation of a specific habitat?".

To better understand the fate of MP and assess the impacts of MP on C cycling in soil, we studied microbial interactions of MP-soil mixtures (MP-amended soil) and individual MP particles of MP with soil microorganisms in a microcosm experiment. We investigated the biodegradability of hydrolysable and non-hydrolysable MP (PLA/PBAT and LDPE) in two different size fractions and the potential effects of MP on microorganisms in dry and wet soil. We hypothesized that (H1) only PLA/PBAT will be mineralized, while LDPE persists, (H2) due to biodegradation of PLA/PBAT, soil microorganisms respond more strongly to PLA/PBAT than to LDPE, and (H3) surfaces of individual PLA/PBAT particles exhibit morphological changes and enhanced activities of specific hydrolytic enzymes (lipases). We expected that interactions of soil microorganisms with MP-amended soil and MP particles are strongest in wet soil (i.e., non-limiting microbial activity) and small MP particle size (i.e., high specific surface area).

We organized research data and analyses according to our hypotheses in three folders ("MineralizationData" (H1), "MicrobialData" (H2), and "EnzymeParticleData" (H3)). In addition, you find the folder "ParticleMeasurement", which contains particle size and shape analyses. You find information about their contents and on how to access and run the data analyses in the "README.html" file.
DOI: 10.17632/n37bddwy7k.2
title: The argonaut constructs its shell via physical self-organization and coordinated cell sensorial activity. (A. Checa et al.)_Dataset.

description: The shell of the cephalopod Argonauta consists of two layers of fibers that elongate
perpendicular to the shell surfaces. Fibers have a calcitic core sheathed by extremely
thin organic membranes, which form a polygonal network in cross-section. During
growth, fibers with small cross-sectional areas tend to shrink, whereas those with large
sections tend to widen, i.e. they follow the von Neumann-Mullins law. We hypothesize
that fibers evolve as an emulsion between the fluid precursors of both the mineral and
organic phases. In addition, when polygons reach big cross-sectional areas, they
become subdivided by new membranes. To interpret this partitioning process we infer
that the living cells from the mineralizing tissue are able to ‘locate’ and subdivide
particularly large polygons. To do this, living cells must perform contact recognition and
subsequent secretion at sub-micron scale. Accordingly, the fabrication of the argonaut
shell proceeds by physical self-organization together with direct cellular activity
DOI: 10.17632/jpwzm9knmb.1
title: Quantum Dissipative Dynamics (QDD): A real-time real-space approach to far-off-equilibrium dynamics in finite electron systems

description: In this paper, we present “QDD” (Quantum Dissipative Dynamics), a code package for simulating the dynamics of electrons and ions in finite electron systems (atoms, molecules, clusters) under the influence of external electromagnetic fields. Electron emission is properly accounted for. The novel feature of the present code is that it also covers the description of dissipative dynamics induced by dynamical correlations generated by electron-electron collisions.

The paper reviews the underlying theoretical as well as numerical methods and demonstrates the code's capabilities on a selection of typical examples.
DOI: 10.17632/tspycdy2rm.1
title: Kinetic data from different acetoacetyl-CoA reductases

description: These folders contain experimental records, calculation datasheets and scripts to simulate or find best-fitted kinetic parameters from certain enzymatically catalyzed reactions. These reactions were catalyzed by four engineered enzymes derived from the acetoacetyl-CoA reductase encoded by the phaB1 gene from Cupriavidus necator. The DNA and amino acid sequences of these enzymes are provided. It is also provided the DNA sequence map of the vector where the amino acid encoding sequences for these engineered enzymes were inserted. Inside the folder named "kinetic data" it is also possible to find a TXT file with a detailed description of the content. The experimental conditions of the enzymatic assays is carefully explained. Briefly, this folder contains (1) the raw experimental data recorded with the software Gen 5 (Biotek). (2) It is also possible to find Microsoft Excel datasheets with the records of raw absorbance in time together with initial substrates, initial enzyme and product concentrations in time (reaction progress curves). Most of these progress curves were analyzed with the software DYNAFIT (Biokin) to obtain the kinetic parameters. The progress curves highlighted in red in the Microsoft Excel files were not considered for the statistical analysis due to experimental errors. The progress curves highlighted in yellow in the Microsoft Excel files were considered after the elimination of some outlier points. (3) Scripts enabling two kind of statistical analyses with DYNAFIT were included: scripts to make model discrimination analyses of the different reaction progress curves obtained in every single experiment, and scripts to calculate the confidence intervals for the kinetic parameters using a Monte Carlo approach. We included the scripting manual of DYNAFIT to understand the synthaxis of these scripts .(4) It is included two MATLAB scripts to make a comparison between the kinetic parameters obtained using the Michaelis-Menten model and the true kinetic parameters of a BiBi reversible reaction. (5) Finally, we included DYNAFIT, MATLAB and Microsoft Excel files enabling the calculation of the relative use of NADH over NADPH by one of the engineered enzymes, and also to calculate the metabolic flux capacity of this enzyme.
DOI: 10.17632/msnsjwwvx7.1
title: Daily price relatives

description: Here are 11 datasets.
DOI: 10.17632/m6cjfmzsxb.1
title: REvolver: Automated running and matching of couplings and masses in QCD

description: In this article we present REvolver, a C++ library for renormalization group evolution and automatic flavor matching of the QCD coupling and quark masses, as well as precise conversion between various quark mass renormalization schemes. The library systematically accounts for the renormalization group evolution of low-scale short-distance masses which depend linearly on the renormalization scale and sums logarithmic terms of high and low scales that are missed by the common logarithmic renormalization scale evolution. The library can also be accessed through Mathematica and Python interfaces and provides renormalization group evolution for complex renormalization scales as well.
DOI: 10.17632/63xr979845.2
title: Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself

description: These are the full data of the following publication:

Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself
Balázs Koncz, Gergő M. Balogh, Benjamin T. Papp, Leó Asztalos, Lajos Kemény, Máté Manczinger
Proceedings of the National Academy of Sciences Sep 2021, 118 (37) e2100542118; DOI: 10.1073/pnas.2100542118

The files are needed to redo the analyses of the study. The code and smaller files can be found on GitHub:

https://github.com/KBalazs1987/ImObsRecognition
DOI: 10.17632/n3wz7y8mhs.1
title: The impact of social isolation and changes in work patterns on ongoing thought during the first COVID-19 lockdown in the United Kingdom.

description: This data was used to examine how changes to socializing and working during the UK's first national lockdown impacted ongoing thought patterns in daily life. We compared the prevalence of thought patterns (identified using Principal Components Analysis, PCA) between two independent real-world experience-sampling cohorts, collected before- and during lockdown. In both samples, young (18-35 y) and older (55+ y) participants completed experience-sampling measures five times daily for seven days. Dimension reduction (PCA) was applied to these data to identify common “patterns of thought”. Linear mixed modelling compared the prevalence of each thought pattern (i) before- and during lockdown, (ii) in different age groups and (iii) across different social and activity contexts. During lockdown, when people were alone, social thinking was reduced, but on the rare occasions when social interactions were possible, we observed a greater increase in social thinking than prelockdown. Furthermore, lockdown was associated with a reduction in future-directed problem-solving, but this thought pattern was reinstated when individuals engaged in work. Therefore, our study suggests that the lockdown led to significant changes in ongoing thought patterns in daily life and these changes were associated with changes to our daily routine that occurred during lockdown.

For full details of how this data was collected, see Mckeown et al (2021), PNAS, The impact of social isolation and changes in work patterns on ongoing thought during the first COVID-19 lockdown in the United Kingdom.
DOI: 10.17632/kws9xbvz3y.1
title: MagneticTB: A package for tight-binding model of magnetic and non-magnetic materials

description: We present a Mathematica program package MagneticTB, which can generate the tight-binding model for arbitrary magnetic space group. The only input parameters in MagneticTB are the (magnetic) space group number and the orbital information in each Wyckoff position. Some useful functions including getting the matrix expression for symmetry operators, manipulating the energy band structure by parameters, and interfacing with other software are also developed. MagneticTB can help to investigate the physical properties in both magnetic and non-magnetic system, especially for topological properties.
DOI: 10.17632/vgk7tnd894.1
title: R Code for the paper: Biological traits can mediate species-specific quasi-extinction risks of macroinvertebrates in streams experiencing frequent extreme floods

description: We studied three caddisfly species in the upstream drainage basin of a central Taiwan river. Our methodological approach comprised four steps (Fig. 2): we analyzed (1) long-term daily, mean discharge data to quantify the magnitude of high flow events; (2) abundance of the three caddisfly species to represent their long-term population dynamics; (3) spatiotemporal population dynamics to examine the effects of the flood magnitude (i.e., the abiotic factor) and density dependence (i.e., biotic factor), in scenarios with synchronous and asynchronous population dynamics (i.e., the spatial factor: spatial variability among sites); and (4) quasi-extinction risks, based on simulated synchronous and asynchronous population dynamics at different time periods across a flood magnitude gradient.
DOI: 10.17632/y7jth5hznv.2
title: Updates to the one-loop provider NLOX

description: In this release note we describe the 1.2 update to NLOX, a computer program for calculations in high-energy particle physics. New features since the 1.0 release and other changes are described, along with usage documentation.
DOI: 10.17632/n2g6b4hdhj.1
title: Supplementary materials

description: Supplementary materials
DOI: 10.17632/6tdzmck83m.1
title: Serial and Different Parallel Implementations of Lattice1Boltzmann Method in Python:  A Comparative Analysis

description: The dataset provides detailed information on  RunTime profile data of solving the Lid-Driven Cavity benchmark with the help of the Lattice-Boltzmann Method.
DOI: 10.17632/xghf3n2zvt.1
title: Innovation Survey Health Bioeconomy in Kenya; Dataset

description: Institutional Effect on Innovation Activities
DOI: 10.3886/e145423v3
title: Replication: Did the colonial mita cause a population collapse? What current surnames reveal in Peru

description: This is the replication package for our paper titled "Did the colonial mita cause a population collapse? What current surnames reveal in Peru". We present quantitative evidence that the mita introduced by the Spanish crown in 1573 caused the decimation of the native-born male population. The mass baptisms after the conquest of Peru in 1532 resulted in the assignation of surnames for the first time. We argue that past mortality displacement and mass out-migration were responsible for differences in the surnames observed in mita and non-mita districts today. Using a regression discontinuity and data from the Peruvian Electoral Roll of 2011, we find that mita districts have 47 log points fewer surnames than non-mita districts, 65 log points fewer surnames that are present in only one district, and 93 log points fewer surnames that are solely present in one area (mita or non-mita).
description: Male labor force in communities subject to the Mita.
DOI: 10.6084/m9.figshare.16635841
title: complete data package

description: Dataset containing behavioral raw data and evaluation sheets from four different experimental setups where Drosophila fruitflies were allowed to control optogenetic light stimulation (self-stimulation).
DOI: 10.5281/zenodo.5513893
title: Data companion to Coussé & Bouma (2021) Semantic scope restrictions in complex verb constructions in Dutch

description: The material in this archive accompanies the paper Evie Coussé and Gerlof Bouma,<br> Semantic scope restrictions in complex verb constructions in Dutch, accepted for publication in Linguistics, An Interdisciplinary Journal<br> of the Language Sciences, De Gruyter Mouton. The archive contains: the annotated data of the paper the code for extraction of the data from the Spoken Dutch Corpus and the Lassy Small Corpus documentation of the selection and annotation process that were too detailed to be included in the paper
DOI: 10.5281/zenodo.5513892
title: Data companion to Coussé & Bouma (2021) Semantic scope restrictions in complex verb constructions in Dutch

description: The material in this archive accompanies the paper Evie Coussé and Gerlof Bouma,<br> Semantic scope restrictions in complex verb constructions in Dutch, accepted for publication in Linguistics, An Interdisciplinary Journal<br> of the Language Sciences, De Gruyter Mouton. The archive contains: the annotated data of the paper the code for extraction of the data from the Spoken Dutch Corpus and the Lassy Small Corpus documentation of the selection and annotation process that were too detailed to be included in the paper
DOI: 10.5281/zenodo.5511611
title: WRF simulations of 2017 Europe Heatwave

description: The WRF model (version 4.1.4) domain was configured with a 9 km grid spacing (547x462 grid cells) with 51 vertical levels covering Europe. National Centers provide the initial and boundary conditions for Environmental Prediction Final Operational Model Global Tropospheric Analyses (NCEP FNL) data, which is available at a 6-hourly and 1-degree temporal and spatial resolution, respectively. The simulations started on 2017-06-08 at 00:00 UTC and ended on 2017-06-25 at 00:00 UTC and with 3-hour steps. The following parameterization schemes were used: the Rapid Radiative Transfer model scheme for longwave radiation, Goddard shortwave scheme, Bougeault-Lacarrère for the planetary boundary layer, WRF single moment 6-class scheme as microphysics, Kain-Fritsch as cumulus scheme, and multi-layer Building Energy Parameterization (BEP) as the urban scheme. The simulations are performed using two LSMs, i.e., Noah and Noah-MP. For the LULC, the Moderate Resolution Imaging Spectroradiometer (MODIS) data is used in two ways: i) the default MODIS LULC which has one urban class `Urban and Built-up Lands'; and ii) the MODIS LULC product in which its original urban land cover is replaced by the 10 urban LCZ classes, available from the European LCZ map at 100 m spatial resolution (hereafter denoted as WUDAPT LULC). The data format is NetCDF containing detailed metadata. Two-dimensional variables are included, horizontal wind components at 10 m AGL, atmospheric pressure at the surface, water vapor mixing ratio at 2 m AGL, the temperature at 2 m AGL, land use/ land cover, sensible heat flux, latent heat flux, and ground heat flux, the height of the terrain, and land mask. These WRF simulations are used to analyze the results of the "Modelling Large-Scale Heatwave by Incorporating Enhanced Urban Representation" manuscript submitted to JGR-Atmospheres.
DOI: 10.6084/m9.figshare.16467531.v1
title: Ontogenetic shape shifting affects size- but not mass-corrected metabolic rate in a stream dwelling fish

description: Body shape, measured as geometric morphometrics approach, standard metabolic rate (SMR) of one- and two-years old juvenile trout, body mass and centroid size.<br>
DOI: 10.5281/zenodo.4733499
title: Additional dataset to "Comparing urban coastal flood risk in 136 cities under two alternative sea-level projections: RCP 8.5 and an expert opinion-based high-end scenario"

description: This dataset provides additional information to that included in: Abadie, L.M., Jackson, L.P., Sainz de Murieta, E., Jevrejeva, S., Galarraga, I., 2020. Comparing urban coastal flood risk in 136 cities under two alternative sea-level projections: RCP 8.5 and an expert opinion-based high-end scenario. Ocean & Coastal Management 193, 105249. https://doi.org/10.1016/j.ocecoaman.2020.105249 The file contains sea-level rise projections, expected damages and risk data for RCP4.5 and RCP2.6 additionally to the RCP8.5 and the High-end scenario provided in the aforementioned article. Also, we present the data for every decade from 2020 to 2100.
description: This work was developed thanks to the financial support received under the following grants and research projects: L.M.A. is grateful for financial support from the Science and Innovation Ministry of Spain (MINECO RTI2018-093352-B-I00). L.P.J. acknowledges funding from the Robertson Foundation for Climate Econometrics (Grant Numbers: 9907422 and 9908921). E.S.M. acknowledges funding from the Basque Government (Postdoctoral Fellowship grant no. POS_2018_2_0027). I.G. was funded by the European Union's Horizon 2020 Research and Innovation Programme under grant agreement no. 776479. L.M.A, E.S.M. and I.G. acknowledge support from the Basque Government through the BERC 2018-2021 programme and from the Spanish Ministry of the Economy and Competitiveness (MINECO) through BC3 María de Maeztu excellence accreditation (MDM-2017-0714). S.J. was funded by the Natural Environmental Research Council under Grant Agreement No. NE/P015107/1.
DOI: 10.5281/zenodo.5513871
title: ImpactChains_GLOBIOM

description: Socio-economic and environmental impacts of gradual climate change on agriculture, forestry and fisheries calculated using the GLOBIOM model
DOI: 10.5281/zenodo.4733498
title: Additional dataset to "Comparing urban coastal flood risk in 136 cities under two alternative sea-level projections: RCP 8.5 and an expert opinion-based high-end scenario"

description: This dataset provides additional information to that included in: Abadie, L.M., Jackson, L.P., Sainz de Murieta, E., Jevrejeva, S., Galarraga, I., 2020. Comparing urban coastal flood risk in 136 cities under two alternative sea-level projections: RCP 8.5 and an expert opinion-based high-end scenario. Ocean & Coastal Management 193, 105249. https://doi.org/10.1016/j.ocecoaman.2020.105249 The file contains sea-level rise projections, expected damages and risk data for RCP4.5 and RCP2.6 additionally to the RCP8.5 and the High-end scenario provided in the aforementioned article. Also, we present the data for every decade from 2020 to 2100.
description: This work was developed thanks to the financial support received under the following grants and research projects: L.M.A. is grateful for financial support from the Science and Innovation Ministry of Spain (MINECO RTI2018-093352-B-I00). L.P.J. acknowledges funding from the Robertson Foundation for Climate Econometrics (Grant Numbers: 9907422 and 9908921). E.S.M. acknowledges funding from the Basque Government (Postdoctoral Fellowship grant no. POS_2018_2_0027). I.G. was funded by the European Union's Horizon 2020 Research and Innovation Programme under grant agreement no. 776479. L.M.A, E.S.M. and I.G. acknowledge support from the Basque Government through the BERC 2018-2021 programme and from the Spanish Ministry of the Economy and Competitiveness (MINECO) through BC3 María de Maeztu excellence accreditation (MDM-2017-0714). S.J. was funded by the Natural Environmental Research Council under Grant Agreement No. NE/P015107/1.
DOI: 10.5281/zenodo.5513870
title: ImpactChains_GLOBIOM

description: Socio-economic and environmental impacts of gradual climate change on agriculture, forestry and fisheries calculated using the GLOBIOM model
DOI: 10.5519/qd.qg4m26er
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (148 records)
DOI: 10.3886/e145423v1
title: Did the colonial mita cause a population collapse? What current surnames reveal in Peru

description: This is the replication package for our paper titled "Did the colonial mita cause a population collapse? What current surnames reveal in Peru". We present quantitative evidence that the mita introduced by the Spanish crown in 1573 caused the decimation of the native-born male population. The mass baptisms after the conquest of Peru in 1532 resulted in the assignation of surnames for the first time. We argue that past mortality displacement and mass out-migration were responsible for differences in the surnames observed in mita and non-mita districts today. Using a regression discontinuity and data from the Peruvian Electoral Roll of 2011, we find that mita districts have 47 log points fewer surnames than non-mita districts, 65 log points fewer surnames that are present in only one district, and 93 log points fewer surnames that are solely present in one area (mita or non-mita).
description: Male labor force in communities subject to the Mita.
DOI: 10.6084/m9.figshare.16635457
title: Tmaze_rescreen

description: One of nine datasets for the project "neural substrates of reinforcement", where Drosophila fruit flies self-stimulate with light to optogenetically activate Chrimson channels in dopaminergic subpopulations.<br>