cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8242898.v1
title: Petroleum_System_Chart

description: Simple petroleum systems chart in excel to record information such as source, reservoir, seal, trap and generation. Typically used in conjunction with data collated in a Geological Events Chart (https://doi.org/10.6084/m9.figshare.8242802.v1).<br><br>
DOI: 10.25442/hku.21080821.v4
title: HKU956: Dataset in "Detecting Music-Induced Emotion Based on Acoustic Analysis and Physiological Sensing: A Multimodal Approach"

description: Introduction HKU956 is a multimodal dataset for analyzing listeners’ emotions and physiological responses induced by music. Five kinds of peripheral physiological signals (i.e., heart rate, electrodermal activity, blood volume pulse, inter-beat interval, and skin temperature) of 30 participants (18 females) were recorded as they listened to music within a period of 40 minutes. Each participant listened to 10 or more songs, and their physiological signals were aligned with the 956 listening records. Participants reported their emotions induced by each song in the arousal and valence dimensions in a scale of [-10, 10]. In addition, participants' personality traits were measured by the Ten Item Personality Measure (TIPI). The raw score in each of the five personality dimensions were presented, together with “high” or “low” categories derived from the TIPI norms provided by Gosling (https://gosling.psy.utexas.edu/scales-weve-developed/ten-item-personality-measure-tipi/). Last but not least, the original audio files of a total of 592 unique music pieces were presented in this dataset. These audio files were originally obtained from Jamando.com with CC-BY Licenses. <br> Update ├─14.09.2022(GMT+8) - First online date ├─31.10.2022(GMT+8) - Posted date └─07.11.2022(GMT+8) - (1) Add the "play_duration" (i.e., Length of time a user plays a song) column into the file "3. AV_ratings.csv"; (2) Fill the missing value of the "valence_rating" column for the record with participant_id=hku1929, song_no=7, song_id=1119024 in the file "3. AV_ratings.csv" <strong>Please cite the following paper when using this dataset</strong> Hu, X.; Li, F.; Liu, R. Detecting Music-Induced Emotion Based on Acoustic Analysis and Physiological Sensing: A Multimodal Approach. Applied Science. 2022, 12, 9354. https://doi.org/10.3390/app12189354 (free text available through Open Access)
DOI: 10.6084/m9.figshare.19729612.v1
title: Panel Data the Quad 1991-2020

description: The dataset comprises the Quad (Australia, India, Japan, and the United States) member countries’ military expenditure (ME) and related economic indicators, 1991-2020. lnME is logarithms of the Quad member countries’ ME. lnSpillover1 is the product of the Quad member countries’ ME divided by its own ME. lnSpillover2 is logarithms of the sum of the Quad member countries’ ME minus its own ME. lnGDP is the Quad member countries’ GDP. And lnChineseME is logarithms of Chinese ME. lnME_fd is the first difference value of lnME. lnSpillover1_fd is the first difference value of lnSpillover1. lnSpillover2_fd is the first difference value of lnSpillover2. lnGDP_fd is the first difference value of ln lnGDP. And lnChineseME_fd is the first difference value of lnChineseME. IV_1_1 is the 2 periods lagged lnSpillover1_fd. IV_1_2 is logarithms of the first difference value of the product of the Quad member countries’ GDP divided by its own GDP. IV_2_1 is the 2 periods lagged lnSpillover2_fd. IV_2_2 is logarithms of the first difference value of the sum of the Quad member countries’ GDP minus its own GDP. Data on the Quad member countries’ ME (in current US dollars) from 1991–2020 were obtained from Stockholm International Peace Research Institute (2022), and data on their GDP (in current US dollars) during the same period were obtained from World Bank (2022). Further, Chinese ME (in current US dollars) from 1991–2020 were obtained from Stockholm International Peace Research Institute (2022). The data were converted to constant US dollars using the US GDP deflator taken from World Bank (2022). Data source Stockholm International Peace Research Institute. 2022. “SIPRI Military Expenditure Database.” https://www.sipri.org/databases/milex. World Bank. 2022. “World Development Indicators.” https://databank.worldbank.org/source/world-development-indicators.
DOI: 10.6084/m9.figshare.23952852.v1
title: Data - Construction of the fear of the Other as an electoral strategy in the European politics: The case of France and Sweden.docx

description: The data involves anti-immigration discourses delivered particularly by the leaders of National Rally in France and Sweden Democrats in Sweden during the electioneering period of the 2019 European elections. The data is reported in online newspapers, i.e. Le Figaro, Le Monde, Aftonbladet and Expressen, from 1 January 2019 to 31 May 2019.
DOI: 10.6084/m9.figshare.14336759.v1
title: Rossby Deformation Radius

description: The Rossby Radius of deformation based on the first surface mode, calculated from World Ocean Atlas 2018, as described in LaCasce and Groeskamp, 2020, Journal of Physical Oceanography.
DOI: 10.6084/m9.figshare.26526754.v1
title: Supplementary Material for: MDM2 is essential to maintain the homeostasis of epithelial cells by targeting p53

description: Introduction: MDM2 is known as the primary negative regulator of p53, MDM2 promotes lung cancer fibrosis and lung injury through p53-dependent and p53-independent pathways. However, the mechanism by which MDM2 influences the pathogenesis of asthma is unknown. In this study, we investigated the function of MDM2 in lung epithelial cells in type 2 lung inflammation. Methods: We used type II alveolar epithelial cell-specific heterozygous knockout of Mdm2 mice to validate its function. Then papain-induced asthma model was established, and changes in inflammation were observed by measuring immunohistochemistry and flow cytometry analysis. Results: In this study, we knockdown the mouse Mdm2 gene in type 2 alveolar epithelial cells. We demonstrated that heterozygous Mdm2 gene-deleted mice were highly susceptible to protease allergen papain-induced pulmonary inflammation characterized by increased ILC2 numbers, IL-5 and IL-13 cytokine levels, and lung pathology. A mechanistic study showed that following the decreased expression of Mdm2 in lung epithelial cells and A549 cell line, p53 was overactivated, and the expression of its downstream genes p21, Puma, and Noxa was elevated, which resulted in apoptosis. After Mdm2 knockdown, the mRNA expression of inflammation-related gene IL-25, HMGB1 and TNF-α were increased, which further amplified the downstream ILC2 response and lung inflammation. Conclusion: These results indicate that Mdm2 maintains the homeostasis of lung epithelial cells by targeting P53, and regulate the function of lung epithelial cells under type 2 lung inflammation.
DOI: 10.6084/m9.figshare.28815287.v2
title: Table S2, MLST type and dDDH values with reference genomes

description: Table S2, MLST type and dDDH values with reference genomes<i>Salmonella</i> isolates were identified using the Genome-to-Genome Distance Calculator (GGDC) against <i>Salmonella </i>reference genomes. Additionally, Identification of acquired AMR genes, plasmid replicon types, and multilocus sequence types was conducted using the Staramr pipeline (v0.11.0) [12], incorporating ResFinder (database version 06.08.2024), PlasmidFinder (database version 08.08.2024), and MLST (v2.23.0).
DOI: 10.6084/m9.figshare.8795087.v1
title: GWAS alleles

description: African soybean-SNF GWAS alleles
DOI: 10.6084/m9.figshare.28239833.v1
title: Technology-enabled Hybrid Cardiac Rehabilitation study - qualitative data set.

description: Currently uptake of cardiac rehabilitation varies by locality, patient gender, ethnicity and socioeconomic status and uptake is currently only around 50% of those who are eligible. Hybrid cardiac rehabilitation combines in-person and remote service delivery, which could improve uptake and reduce inequalities in access. This study aimed to explore healthcare staff and patient experiences of using the Active+me remote hybrid cardiac rehabilitation app across three UK NHS sites in England.
DOI: 10.6084/m9.figshare.28457846.v1
title: Supplementary Material for: Designing clinical trials for the treatment of membranous nephropathy in the anti-PLA2R era: results of a Nephcure membranous nephropathy workshop

description: Primary membranous nephropathy is a common cause of adult-onset nephrotic syndrome, with an overall incidence of 12 cases per million per year. Primary membranous nephropathy is an autoimmune kidney disease; however, primary membranous nephropathy autoantigens remained elusive until 2009 when the M-type phospholipase A2 receptor 1 (PLA2R) was identified as a disease autoantigen. This was followed relatively rapidly by identification of several other autoantigens. Autoantibodies against PLA2R are detectable in ≈75% of patients with primary membranous nephropathy. The discovery of circulating and deposited autoantibodies against PLA2R offers an opportunity in nephrology to personalize disease management. On January 14, 2023, Nephcure Kidney International convened a scientific workshop in Arlington, Virginia, to discuss the state of the science on autoantibodies against PLA2R and considerations related to the incorporation of autoantibodies against PLA2R in drug development programs for membranous nephropathy. The present report captures the discussion that occurred at the Membranous Nephropathy Scientific Workshop.
DOI: 10.6084/m9.figshare.17012759.v1
title: Power Africa Reports, 2014-2019

description: Power Africa reports, 2014-2019<br>
DOI: 10.6084/m9.figshare.28647809.v1
title: Supplementary Material for: Exploratory Analysis of Sleep Deprivation Effects on Gene Expression and Regional Brain Metabolism

description: Sleep deprivation affects cognitive performance and immune function, yet its mechanisms and biomarkers remain unclear. This study explored the relationships among gene expression, brain metabolism, sleep deprivation, and sex differences.

Methods
Fluorodeoxyglucose-18 positron emission tomography (18F-FDG PET) measured brain metabolism in regions of interest (ROIs), and RNA analysis of blood samples assessed gene expression pre- and post-sleep deprivation. Mixed model regression and principal component analysis (PCA) identified significant genes and regional metabolic changes.

Results
There were 23 and 28 differentially expressed probesets for the main effects of sex and sleep deprivation, respectively, and 55 probesets for their interaction (FDR-corrected p&lt;0.05). Functional analysis revealed enrichment in nucleoplasm- and UBL conjugation-related genes. 
Genes with significant sex effects mapped to chromosomes Y and 19
(Benjamini-Hochberg (BH) FDR p&lt;0.05), with 11 genes (4%) and 29 genes (10.5%) involved, respectively. Differential gene expression highlighted sex-based differences in innate and adaptive immunity.

For brain metabolism, sleep deprivation resulted in significant decreases in the left insula, left medial prefrontal cortex (BA32), left somatosensory cortex (BA1/2), and left motor premotor cortex (BA6) and increases in the right inferior longitudinal fasciculus, right primary visual cortex (BA17), right amygdala, left cerebellum, and bilateral pons.

Conclusion
Sleep deprivation broadly impacts brain metabolism, gene expression, and immune function, revealing cellular stress responses and hemispheric vulnerability. These findings enhance our understanding of the molecular and functional effects of sleep deprivation.
DOI: 10.6084/m9.figshare.28665032.v2
title: Genotyping of rapeseed (B. napus) accessions.

description: Rapeseed (<i>Brassica napus</i>) accessions were genotyped using Brassica 19K Illumina SNP array.
DOI: 10.6084/m9.figshare.12369209.v3
title: 84K_genome.zip

description: <i>Populus alba</i> × <i>P. glandulosa</i> clone 84K is widely cultivated and used as a model tree in the molecular research of woody plants because it is very easy for gene transformation. In this study, we performed PacBio sequencing and assembled the genome with a size of 781.36 Mb (mega base).
DOI: 10.6084/m9.figshare.22284535.v3
title: event

description: wyscout
DOI: 10.6084/m9.figshare.22085762.v1
title: Table S4 BLAST results of SNP-associated sequences from masson pine accessions compared with the non-redundant (nr) protein database.

description: Table S4 BLAST results of SNP-associated sequences from masson pine accessions compared with the non-redundant (nr) protein database.
DOI: 10.6084/m9.figshare.22354576.v2
title: Logistic Regression predictions for TDC BBB-Martins Leaderboard

description: Logistic Regression predictions for a drugs ability to penetrate the blood brain barrier using Therapeutic Data Commons BBB-Martins dataset. <br> Includes .tsv files with the actual and predicted classifications of BBB permeability for each drug in the TDC test set using a Logistic Regression model. Note that a vlassification label of 0 means not-permeable and a label of 1 means the drug is BBB permeable.
DOI: 10.6084/m9.figshare.4028613.v5
title: Processed expression data of all samples for CAGE human PRJDB1099 (FANTOM5)

description: A tab-separated values (TSV) file for RefEx_expression_CAGE_all_human_PRJDB1099
DOI: 10.6084/m9.figshare.23544849.v1
title: deck dataset

description: It contains a standard deck dataset
DOI: 10.6084/m9.figshare.24912627.v1
title: Supplementary Material for: Higher depressive symptoms in irregular menstrual cycles - converging evidence from cross-sectional and prospective assessments

description: Background: Menstrual cycle regularity is an important marker of reproductive health and associated with physiological and psychological illnesses, as well as experiencing stress. We hypothesized that individuals with irregular menstrual cycles report higher depressive symptom severity, after controlling for stress occurrence. 
Methods: The hypothesis was examined through two measurement approaches: a cross-sectional and a prospective, longitudinal study. In the cross-sectional study, participants (n = 394) reported depressive symptoms and their overall menstrual cycle regularity. In the longitudinal study, participants (n = 77) completed questionnaires on depressive symptoms and stress during the mid-follicular and periovulatory phase of one menstrual cycle. Depressive symptoms were compared between participants with regular and irregular cycles through a Welch t-test and an ANCOVA. 
Results: Participants with irregular menstrual cycles reported more depressive symptoms in the cross-sectional analysis. Similarly, in the longitudinal analysis, the group with a current irregular menstrual cycle reported more depressive symptoms after controlling for stress occurrence. When including only complete data sets without multiple imputation (n = 52), the direction of the effects remained, but did not reach statistical significance. 
Limitations: Although we investigated the menstrual cycle prospectively, it would have been more precise to include two or more cycles and daily sex hormone measurements. Further limitations were the suboptimal statistical power and the data collection during the COVID pandemic. 
Conclusions: The results indicate an association between depressive symptoms and menstrual cycle irregularity. We give recommendations on how to incorporate this in future study designs on women’s mental health.
DOI: 10.6084/m9.figshare.27073612.v2
title: All process data of Oosterhorn SWWTP case study

description: Here, you find all process data and metadata relevant for Oosterhorn SWWTP case study
DOI: 10.6084/m9.figshare.3504539.v1
title: Different representations of the same behavioural data

description: Reproducibility package containing data, R script and final plot of Figure 1 of this blog post on data visualisation in neuroscience:<br>https://garstats.wordpress.com/2016/07/28/neuroscience-group-results/
DOI: 10.6084/m9.figshare.24764589.v1
title: final data

description: data to run analysis
DOI: 10.6084/m9.figshare.27160017.v4
title: EHR Actual Use

description: This study investigated factors influencing nurses' use of electronic health record (EHR) systems in resource-limited settings in Botswana, and the authors propose strategies for improved adoption and utilization. Despite EHR benefits, many nurses in resource-limited settings still use paper-based systems, hindering health care delivery and patient outcomes.
DOI: 10.6084/m9.figshare.1533034.v7
title: Metadata and data for https://doi.org/10.1128/AEM.03128-15

description: <strong>Publication reference:</strong> Hogle SL, Cameron Thrash J, Dupont CL, Barbeau KA. Trace metal acquisition by marine heterotrophic bacterioplankton with contrasting trophic strategies. Appl Environ Microbiol. 2016. 82:1613–24. <b>File Descriptions: </b>Supplemental_material.pdf - Supplemental methods, results, tables, figures, and referencesDataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundanceDataset2.xlsx - CDD/PFAM/COGs used to identify metal transportersDataset3.xlsx - Predicted Fur boxesDataset4.xlsx - COGs used for phylogenetic tree constructionDataset5.xlsx - TonB dependent receptor genome neighborhoods and Markov Clustering parametersDataset6.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.19093769.v2
title: Willamette River coastal cutthroat trout summertime movement and habitat use

description: Mobile telemetry data; weekly surveys conducted on the upper Willamette River (McKenzie River junction to Albany) May 25 - October 7 2020, additional areas surveyed include the Willamette 13.5km upriver from the McKenzie River junction, the McKenzie River from the Leaburg dam to its terminus at the Willamette, the Long Tom from the Monroe low-head dam to its terminus at the Willamette, and the lower 9km of the Mary's River. River temperature data collected using USGS temperature gauges and HOBO temperature loggers deployed across the study extent.
DOI: 10.6084/m9.figshare.27760026.v1
title: Anexo 1-Tabla 4. Revistas seleccionadas (país, índice y base de datos), etapas, número y porcentaje de artículos y referencias analizados

description: This table shows the list of journals selected in the research entitled "Citation patterns, the Matilda effect and gender bias in communication & media Studies scientific output in Ibero-America (1980-2022)". This article analyses diachronically the role of women in the field of communication & media Studies in Ibero-America by studying the presence or absence of women in the bibliography of a selection of articles taken from 60 communication academic journals in nine countries (Spain, Portugal, Brazil, Argentina, Mexico, Chile, Colombia, Ecuador and Peru) between 1980 and 2022. This study measures the degree of visibility of female scientists and their contribution and compares it statistically to that of their male counterparts by quantifying from a gender perspective the citation patterns of authors of the 484 scientific articles included in the study. The findings showed that the visibility of the female researchers-authors increased over time. Furthermore, an over-citation of publications by male researchers was also found. Last, in one of the periods analysed, in the years between 1996-2010, gender homophily was found, i.e. female researchers tended to cite more women than men during this period.<br>
DOI: 10.6084/m9.figshare.28695827.v1
title: Friction and Tiredness - Literature survey burnout

description: This dataset contains the data linked to the paper "Friction and Tiredness: A literature analysis of burnout causes inthe field of software engineering"<br><br>This dataset contains:The deduplicated papers from the searchThe Included and Excluded papersThe Taxonomy Iterations
DOI: 10.6084/m9.figshare.26892994.v1
title: Supplementary Material for: Long-term effects and impressions of minimal footwear in older adults

description: Introduction: Foot pathologies can lead to difficulty walking and falls in older adults. Intrinsic foot muscles contribute to the structural support and alignment of the foot and provide somatosensory input from the ground. Minimally cushioned footwear may naturally strengthen intrinsic foot muscles and enhance sensory input to the foot; however, these effects are largely unknown in older adults. Further, there is little evidence regarding the prescription of minimal footwear and the perceptions of this footwear by older adults.
Methods: Twenty-four adults age &gt; 65 volunteered to use minimal footwear for prescribed times during daily activities for 16 weeks. The cross-sectional area (CSA) of 5 intrinsic foot muscles was measured using ultrasound imaging at baseline, 8-weeks, and 16-weeks. Semi-structured interviews were recorded regarding participants’ impressions of the footwear, the progressive wear schedule, the footwear’s effects on orthopedic-related pain, balance, and foot awareness/sensation. 
Results: Across the cohort there was no significant difference in CSA of the 5 muscles after 16 weeks of minimal footwear use. Thirteen participants had clinically meaningful increased CSA of the abductor hallucis muscle (Abh). These positive responders had no significant differences in age, grip strength, foot structure, or fall risk scores compared to participants with little to no CSA change. Interview results indicated a generally positive experience with minimal footwear for 68.1% of the cohort. A large percentage of the cohort reported no difficulty with the progressive wear schedule (77.2%), no aggravation of pre-existing conditions and no new pain (77.2%), improved balance, (63.6%), and improved foot awareness/sensation (72.7%) with minimal footwear use. The progressive wear schedule was perceived as inconvenient by some in the first few weeks (22.8%), but resulted in mild to no adverse effects when followed as prescribed. 
Conclusion: Sixteen weeks of progressive minimal footwear use in older adults did not lead to changes in intrinsic foot muscle CSA; however, half of the cohort had clinically meaningful increased CSA in the Abh muscle. It is unclear what individual qualities were associated with this positive response. Older adults reported generally positive experiences with minimal footwear with self-reported improvements in balance and foot awareness/sensation. The wear schedule may have been too conservative or not long enough to produce foot muscle hypertrophy, but subjective reports suggest beneficial neuromuscular adaptations and sensory changes occurred. Future research may need a greater length of time and larger samples to further determine the effects of long-term minimal footwear use in older adults.
DOI: 10.6084/m9.figshare.3552288.v1
title: Appendix B. Details of the sound recordings that were used for playback in the acoustic cue experiments.

description: Details of the sound recordings that were used for playback in the acoustic cue experiments.