cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3526643
title: Appendix E. Variation in absolute abundance of the 10 most abundant mobile species.

description: Variation in absolute abundance of the 10 most abundant mobile species.
DOI: 10.6084/m9.figshare.3526643.v1
title: Appendix E. Variation in absolute abundance of the 10 most abundant mobile species.

description: Variation in absolute abundance of the 10 most abundant mobile species.
DOI: 10.6084/m9.figshare.3526640
title: Appendix F. Effect of disturbance on the percentage composition of mobile species in a quadrat.

description: Effect of disturbance on the percentage composition of mobile species in a quadrat.
DOI: 10.6084/m9.figshare.3526640.v1
title: Appendix F. Effect of disturbance on the percentage composition of mobile species in a quadrat.

description: Effect of disturbance on the percentage composition of mobile species in a quadrat.
DOI: 10.6084/m9.figshare.3526637
title: Appendix G. Ranked relative abundance (mean) of mobile species in each treatment.

description: Ranked relative abundance (mean) of mobile species in each treatment.
DOI: 10.6084/m9.figshare.3526637.v1
title: Appendix G. Ranked relative abundance (mean) of mobile species in each treatment.

description: Ranked relative abundance (mean) of mobile species in each treatment.
DOI: 10.6084/m9.figshare.3526634
title: Appendix H. Histograms of oyster percent cover on cobbles from study site (a) and from experiment (b).

description: Histograms of oyster percent cover on cobbles from study site (a) and from experiment (b).
DOI: 10.6084/m9.figshare.3526634.v1
title: Appendix H. Histograms of oyster percent cover on cobbles from study site (a) and from experiment (b).

description: Histograms of oyster percent cover on cobbles from study site (a) and from experiment (b).
DOI: 10.6084/m9.figshare.3526631
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3526631.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3526628
title: Appendix A. State probability solutions for the three-state irreversible disease model.

description: State probability solutions for the three-state irreversible disease model.
DOI: 10.6084/m9.figshare.3526628.v1
title: Appendix A. State probability solutions for the three-state irreversible disease model.

description: State probability solutions for the three-state irreversible disease model.
DOI: 10.6084/m9.figshare.3526625
title: Supplement 1. R function for fitting age-varying force-of-infection models to disease prevalence data.

description: File List Currentstatus.txt Description The text file currentstatus.txt contains the R function for fitting force-of-infection models to disease prevalence data. The R statistical environment is required to run the function. The required and optional arguments are described in the comments of the code.
DOI: 10.6084/m9.figshare.3526625.v1
title: Supplement 1. R function for fitting age-varying force-of-infection models to disease prevalence data.

description: File List Currentstatus.txt Description The text file currentstatus.txt contains the R function for fitting force-of-infection models to disease prevalence data. The R statistical environment is required to run the function. The required and optional arguments are described in the comments of the code.
DOI: 10.6084/m9.figshare.3526622
title: Appendix A. An extension of the eigenanalysis of selection ratios for design-III data.

description: An extension of the eigenanalysis of selection ratios for design-III data.
DOI: 10.6084/m9.figshare.3526622.v1
title: Appendix A. An extension of the eigenanalysis of selection ratios for design-III data.

description: An extension of the eigenanalysis of selection ratios for design-III data.
DOI: 10.6084/m9.figshare.3526619
title: Appendix A. A discussion of the effects of cyclic permutations and initial conditions on the transient dynamics of a tropical grass (Andropogon semiberbis) exposed to alternating burn and non-burn environments.

description: A discussion of the effects of cyclic permutations and initial conditions on the transient dynamics of a tropical grass (Andropogon semiberbis) exposed to alternating burn and non-burn environments.
DOI: 10.6084/m9.figshare.3526619.v1
title: Appendix A. A discussion of the effects of cyclic permutations and initial conditions on the transient dynamics of a tropical grass (Andropogon semiberbis) exposed to alternating burn and non-burn environments.

description: A discussion of the effects of cyclic permutations and initial conditions on the transient dynamics of a tropical grass (Andropogon semiberbis) exposed to alternating burn and non-burn environments.
DOI: 10.6084/m9.figshare.3526616
title: Appendix B. Derivation of the equation for within-cycle sensitivity.

description: Derivation of the equation for within-cycle sensitivity.
DOI: 10.6084/m9.figshare.3526616.v1
title: Appendix B. Derivation of the equation for within-cycle sensitivity.

description: Derivation of the equation for within-cycle sensitivity.
DOI: 10.6084/m9.figshare.3526613
title: Supplement 1. Matlab scripts for calculating the sensitivity and elasticity of population size for periodic matrix models.

description: File List periodicExample.m periodicSense.m S.m delta_S.m Description -- TABLE: Please see in attached file. --
DOI: 10.6084/m9.figshare.3526613.v1
title: Supplement 1. Matlab scripts for calculating the sensitivity and elasticity of population size for periodic matrix models.

description: File List periodicExample.m periodicSense.m S.m delta_S.m Description -- TABLE: Please see in attached file. --
DOI: 10.6084/m9.figshare.3526610
title: Appendix A. Phylogenetic pairs of returning and non-returning butterflies at Wanariset.

description: Phylogenetic pairs of returning and non-returning butterflies at Wanariset.
DOI: 10.6084/m9.figshare.3526610.v1
title: Appendix A. Phylogenetic pairs of returning and non-returning butterflies at Wanariset.

description: Phylogenetic pairs of returning and non-returning butterflies at Wanariset.
DOI: 10.6084/m9.figshare.3526607
title: Appendix A. A figure showing litter N dynamics in the three experiments.

description: A figure showing litter N dynamics in the three experiments.
DOI: 10.6084/m9.figshare.3526607.v1
title: Appendix A. A figure showing litter N dynamics in the three experiments.

description: A figure showing litter N dynamics in the three experiments.
DOI: 10.6084/m9.figshare.3526604
title: Appendix A. Phylotype accumulation curves.

description: Phylotype accumulation curves.
DOI: 10.6084/m9.figshare.3526604.v1
title: Appendix A. Phylotype accumulation curves.

description: Phylotype accumulation curves.
DOI: 10.6084/m9.figshare.3526601
title: Appendix B. Phylotype distribution and abundance among ectomycorrhizal fungal lineages.

description: Phylotype distribution and abundance among ectomycorrhizal fungal lineages.
DOI: 10.6084/m9.figshare.3526601.v1
title: Appendix B. Phylotype distribution and abundance among ectomycorrhizal fungal lineages.

description: Phylotype distribution and abundance among ectomycorrhizal fungal lineages.
DOI: 10.6084/m9.figshare.3526598
title: Appendix C. Additional methods and results pertaining to the identification of EMF taxa from ITS sequence data.

description: Additional methods and results pertaining to the identification of EMF taxa from ITS sequence data.
DOI: 10.6084/m9.figshare.3526598.v1
title: Appendix C. Additional methods and results pertaining to the identification of EMF taxa from ITS sequence data.

description: Additional methods and results pertaining to the identification of EMF taxa from ITS sequence data.
DOI: 10.6084/m9.figshare.3526595
title: Appendix A. A table showing parameter values used in the calculations on the expected net gain rate over distance.

description: A table showing parameter values used in the calculations on the expected net gain rate over distance.
DOI: 10.6084/m9.figshare.3526595.v1
title: Appendix A. A table showing parameter values used in the calculations on the expected net gain rate over distance.

description: A table showing parameter values used in the calculations on the expected net gain rate over distance.
DOI: 10.6084/m9.figshare.3526592
title: Appendix B. Figures showing (1) an overview of the study area and study design; (2) Sago pondweed tuber biomass densities in the experimental grid; (3) mean Sago pondweed tuber density for plots in which aboveground biomass was removed during different stages of the growing season; and (4) the mean Sago pondweed biomass density encountered by a swan when it made short and long movements from patches with different initial tuber density classes.

description: Figures showing (1) an overview of the study area and study design; (2) Sago pondweed tuber biomass densities in the experimental grid; (3) mean Sago pondweed tuber density for plots in which aboveground biomass was removed during different stages of the growing season; and (4) the mean Sago pondweed biomass density encountered by a swan when it made short and long movements from patches with different initial tuber density classes.
DOI: 10.6084/m9.figshare.3526592.v1
title: Appendix B. Figures showing (1) an overview of the study area and study design; (2) Sago pondweed tuber biomass densities in the experimental grid; (3) mean Sago pondweed tuber density for plots in which aboveground biomass was removed during different stages of the growing season; and (4) the mean Sago pondweed biomass density encountered by a swan when it made short and long movements from patches with different initial tuber density classes.

description: Figures showing (1) an overview of the study area and study design; (2) Sago pondweed tuber biomass densities in the experimental grid; (3) mean Sago pondweed tuber density for plots in which aboveground biomass was removed during different stages of the growing season; and (4) the mean Sago pondweed biomass density encountered by a swan when it made short and long movements from patches with different initial tuber density classes.
DOI: 10.6084/m9.figshare.3526589
title: Appendix A. Representative chromatograms of plant secondary metabolite composition of Eucalytpus globulus and E. tenuiramis foliage.

description: Representative chromatograms of plant secondary metabolite composition of Eucalytpus globulus and E. tenuiramis foliage.
DOI: 10.6084/m9.figshare.3526589.v1
title: Appendix A. Representative chromatograms of plant secondary metabolite composition of Eucalytpus globulus and E. tenuiramis foliage.

description: Representative chromatograms of plant secondary metabolite composition of Eucalytpus globulus and E. tenuiramis foliage.
DOI: 10.6084/m9.figshare.3526586
title: Appendix B. Representative total phenolic profiles for Eucalytpus globulus and E. tenuiramis using high performance liquid chromatography (HPLC) chromatograms.

description: Representative total phenolic profiles for Eucalytpus globulus and E. tenuiramis using high performance liquid chromatography (HPLC) chromatograms.
DOI: 10.6084/m9.figshare.3526586.v1
title: Appendix B. Representative total phenolic profiles for Eucalytpus globulus and E. tenuiramis using high performance liquid chromatography (HPLC) chromatograms.

description: Representative total phenolic profiles for Eucalytpus globulus and E. tenuiramis using high performance liquid chromatography (HPLC) chromatograms.
DOI: 10.6084/m9.figshare.3526583
title: Supplement 1. Data and R code for analyzing extinction times of experimental Daphnia populations.

description: File List data.csv - Table of raw data<br> DaphExt.r - R code for performing analysis Description The file data.csv is a comma separated ASCII file containing extinction times for 281 populations of <i>Daphnia magna</i> under three levels of environmental variation. The first line is a header containing variable names. The variable treatment takes values "low", "medium", or "high" referring to the experimental treatment. The variables treatment2 and treatment3 are re-coded versions of treatment provided for convenience. The variable treatment2 assigns the level "A" to subjects in the "low" experimental treatment, assigns "B" to subjects in the "medium" experimental treatment, and assigns "C" to subjects in the "high" experimental treatment. The variable treatment3 pools subjects in the "low" and "medium" treatments, assigning them the level "A", while subjects in the "high" experimental treatment are assigned "C", as before. The variable id is a unique identifier for each population. The variable ext is a censoring variable, taking the value "1" if the population went extinct during the course of the experiment and "0" otherwise. The variable dur reports the duration of population observation, the time-to-extinction in the case of populations going extinct and the duration of the experiment otherwise. The file DaphExt.r contains R code for performing the Cox proportional hazards regression, estimating the survival distribution using the Kaplan-Meier estimator, and reproducing figures from the text. In addition to the basic R environment, this code depends on functions in the package survival which can be obtained along with the basic R environment from the Comprehensive R Archive Network (CRAN) found at www.r-project.org.
DOI: 10.6084/m9.figshare.3526580
title: Appendix A. DNA extraction and amplification protocol for microsatellite markers Pb8 and Myrt3.

description: DNA extraction and amplification protocol for microsatellite markers Pb8 and Myrt3.
DOI: 10.6084/m9.figshare.3526577
title: Appendix B. Summary statistics for tests for heterogeneity to assess validity of pooling data across colonies.

description: Summary statistics for tests for heterogeneity to assess validity of pooling data across colonies.
DOI: 10.6084/m9.figshare.3526577.v1
title: Appendix B. Summary statistics for tests for heterogeneity to assess validity of pooling data across colonies.

description: Summary statistics for tests for heterogeneity to assess validity of pooling data across colonies.
DOI: 10.6084/m9.figshare.3526574
title: Appendix C. Mitochondrial clade assignments and genotypes for workers, eggs, and queens at microsatellite loci Pb8 and Myrt3, and allozyme marker PGI.

description: Mitochondrial clade assignments and genotypes for workers, eggs, and queens at microsatellite loci Pb8 and Myrt3, and allozyme marker PGI.
DOI: 10.6084/m9.figshare.3526574.v1
title: Appendix C. Mitochondrial clade assignments and genotypes for workers, eggs, and queens at microsatellite loci Pb8 and Myrt3, and allozyme marker PGI.

description: Mitochondrial clade assignments and genotypes for workers, eggs, and queens at microsatellite loci Pb8 and Myrt3, and allozyme marker PGI.
DOI: 10.6084/m9.figshare.3526571
title: Appendix D. P values for post hoc pairwise comparisons of worker masses (Tukey's unequal N hsd).

description: P values for post hoc pairwise comparisons of worker masses (Tukey's unequal N hsd).
DOI: 10.6084/m9.figshare.3526568
title: Appendix A. Location data (state, county, locale) and sample size for specimens of Pogonomyrmex barbatus and P. rugosus used for allozyme data.

description: Location data (state, county, locale) and sample size for specimens of Pogonomyrmex barbatus and P. rugosus used for allozyme data.
DOI: 10.6084/m9.figshare.3526568.v1
title: Appendix A. Location data (state, county, locale) and sample size for specimens of Pogonomyrmex barbatus and P. rugosus used for allozyme data.

description: Location data (state, county, locale) and sample size for specimens of Pogonomyrmex barbatus and P. rugosus used for allozyme data.
DOI: 10.6084/m9.figshare.3526565
title: Appendix B. Summary of worker heterozygosity data for two allozymes (PGI and EST-1) sampled across populations of Pogonomyrmex barbatus and P. rugosus.

description: Summary of worker heterozygosity data for two allozymes (PGI and EST-1) sampled across populations of Pogonomyrmex barbatus and P. rugosus.
DOI: 10.6084/m9.figshare.3526565.v1
title: Appendix B. Summary of worker heterozygosity data for two allozymes (PGI and EST-1) sampled across populations of Pogonomyrmex barbatus and P. rugosus.

description: Summary of worker heterozygosity data for two allozymes (PGI and EST-1) sampled across populations of Pogonomyrmex barbatus and P. rugosus.
DOI: 10.6084/m9.figshare.3526562
title: Appendix C. Summary of allele frequencies at three allozymes (PGI, EST-1, and PGM-1) for workers and alate queens across populations of the nominal morphospecies Pogonomyrmex barbatus and P. rugosus.

description: Summary of allele frequencies at three allozymes (PGI, EST-1, and PGM-1) for workers and alate queens across populations of the nominal morphospecies Pogonomyrmex barbatus and P. rugosus.
DOI: 10.6084/m9.figshare.3526562.v1
title: Appendix C. Summary of allele frequencies at three allozymes (PGI, EST-1, and PGM-1) for workers and alate queens across populations of the nominal morphospecies Pogonomyrmex barbatus and P. rugosus.

description: Summary of allele frequencies at three allozymes (PGI, EST-1, and PGM-1) for workers and alate queens across populations of the nominal morphospecies Pogonomyrmex barbatus and P. rugosus.
DOI: 10.6084/m9.figshare.3526559
title: Data Paper. Data Paper

description: File List File is 3381 records, not including header row, Ascii text, tab delimited. No compression schemes were used. LS_trees_1983_2000.txt Description Tree species richness in tropical rain forest typically exceeds several hundred species over mesoscale landscapes. There is no generally accepted ecological theory that accounts for the coexistence of so many species with the same general morphologies and the same basic requirements of light, nutrients, water, and physical space. In part, this lack of theory rests on the lack of understanding of the post-establishment ecology for the vast majority of tropical tree species. Of even more immediate concern is the lack of data on tree performance in relation to climate; such data are critical to project effects of global climate change on tropical forests. Here we present data from a project designed to examine the post-establishment ecology of 10 species of tropical wet forest trees selected to span a range of predicted life history patterns. The study site was terra firme old-growth tropical wet forest at the La Selva Biological Station in Costa Rica. Particular emphasis has been placed on evaluating the precision of measurements, metadata development, and annual measurements of all individuals. Because the climates of all forest environments show significant interannual variation, the annual time interval is a powerful scale at which to study the relation of tree performance to climate variation. It is also a temporal interval that captures the scale of microhabitat variations and the responses of trees to this variation in tropical rain forest. We present data on survivorship, growth, and microhabitat for 3381 individuals from &gt;50 cm tall to canopy-level individuals measured annually between 1983 and 2000 (the study is ongoing and complete through 2005), thus adding seven years’ data and the dominant canopy species at La Selva to the data set we published in 2000. The data set is unique in its scope (number of years of continuous annual measurements, number of monitored individuals) as well as in the degree of metadata documentation and unrestricted access to the raw data. The data have been used to study life history patterns, relations with microhabitats including edaphic factors and crown light environments, relations among ecophysiology, morphology, and performance, and the relation of tree performance to climate variation both at local and global scales. The data have also been used in a diversity of remote sensing studies. <i> Key words</i>: <i>Costa Rica; emergents; La Selva; life history strategies; physical damage; tree demography; tropical rain forest; tropical trees.</i>
DOI: 10.6084/m9.figshare.3526559.v1
title: Data Paper. Data Paper

description: File List File is 3381 records, not including header row, Ascii text, tab delimited. No compression schemes were used. LS_trees_1983_2000.txt Description Tree species richness in tropical rain forest typically exceeds several hundred species over mesoscale landscapes. There is no generally accepted ecological theory that accounts for the coexistence of so many species with the same general morphologies and the same basic requirements of light, nutrients, water, and physical space. In part, this lack of theory rests on the lack of understanding of the post-establishment ecology for the vast majority of tropical tree species. Of even more immediate concern is the lack of data on tree performance in relation to climate; such data are critical to project effects of global climate change on tropical forests. Here we present data from a project designed to examine the post-establishment ecology of 10 species of tropical wet forest trees selected to span a range of predicted life history patterns. The study site was terra firme old-growth tropical wet forest at the La Selva Biological Station in Costa Rica. Particular emphasis has been placed on evaluating the precision of measurements, metadata development, and annual measurements of all individuals. Because the climates of all forest environments show significant interannual variation, the annual time interval is a powerful scale at which to study the relation of tree performance to climate variation. It is also a temporal interval that captures the scale of microhabitat variations and the responses of trees to this variation in tropical rain forest. We present data on survivorship, growth, and microhabitat for 3381 individuals from &gt;50 cm tall to canopy-level individuals measured annually between 1983 and 2000 (the study is ongoing and complete through 2005), thus adding seven years’ data and the dominant canopy species at La Selva to the data set we published in 2000. The data set is unique in its scope (number of years of continuous annual measurements, number of monitored individuals) as well as in the degree of metadata documentation and unrestricted access to the raw data. The data have been used to study life history patterns, relations with microhabitats including edaphic factors and crown light environments, relations among ecophysiology, morphology, and performance, and the relation of tree performance to climate variation both at local and global scales. The data have also been used in a diversity of remote sensing studies. <i> Key words</i>: <i>Costa Rica; emergents; La Selva; life history strategies; physical damage; tree demography; tropical rain forest; tropical trees.</i>
DOI: 10.6084/m9.figshare.3526556
title: Appendix A. Evaluation of statistical power of the null model of Nichols et al.

description: Evaluation of statistical power of the null model of Nichols et al.
DOI: 10.6084/m9.figshare.3526556.v1
title: Appendix A. Evaluation of statistical power of the null model of Nichols et al.

description: Evaluation of statistical power of the null model of Nichols et al.
DOI: 10.6084/m9.figshare.3526553
title: Appendix A. The amount of 1,8-cineole, p-cymene, sodium benzoate, orcinol, and rutin ingested by brushtail possums at different dietary concentrations.

description: The amount of 1,8-cineole, p-cymene, sodium benzoate, orcinol, and rutin ingested by brushtail possums at different dietary concentrations.
DOI: 10.6084/m9.figshare.3526553.v1
title: Appendix A. The amount of 1,8-cineole, p-cymene, sodium benzoate, orcinol, and rutin ingested by brushtail possums at different dietary concentrations.

description: The amount of 1,8-cineole, p-cymene, sodium benzoate, orcinol, and rutin ingested by brushtail possums at different dietary concentrations.
DOI: 10.6084/m9.figshare.3526550
title: Appendix B. A summary of the detoxification of six PSMs by brushtail possums.

description: A summary of the detoxification of six PSMs by brushtail possums.
DOI: 10.6084/m9.figshare.3526550.v1
title: Appendix B. A summary of the detoxification of six PSMs by brushtail possums.

description: A summary of the detoxification of six PSMs by brushtail possums.