cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p24q3/5
title: evening pollinator visitation

description: Pollinator visitation data for evening observation periods during our study. Each row represents the visitation frequency of a certain type of pollinator during a given observation period. For each observation period, "abundance" gives the number of foraging bouts per observed flower, and "pollinator" gives the pollinator identity (bee or moth).
DOI: 10.5061/dryad.p24q3/6
title: combined pollinator visitation

description: This file contains the morning and evening pollinator visitation data combined into one file, and was used in the pooled analysis of pollinator abundance.
DOI: 10.5061/dryad.p24q3/7
title: pollinator foraging bouts

description: This file contains the number of different flowers visited during individual pollinator foraging bouts during our study. Each row represents a unique foraging bout. For each foraging bout, "time" gives the observation time (morning or evening), "visitor" gives the pollinator identity (hawkmoth or solitary bee) and "flowersVisited" gives the number of different flowers visited during that foraging bout.
DOI: 10.5061/dryad.p2s02/1
title: Analytic derivations, simulation code, and simulation results

description: The ZIP archive contains derivations of the analytic models, as both Mathematica notebooks and PDF documents, R scripts for individual-based simulations, and output from simulations reported in the paper. See the README for more detail.
DOI: 10.5061/dryad.q8m4f/40
title: 3NP-3_S21_L001_R1_001.fastq
DOI: 10.5061/dryad.q8m4f/41
title: 3NP-3_S21_L001_R2_001.fastq
DOI: 10.5061/dryad.q8m4f/42
title: 3X-1_S25_L001_I1_001.fastq
DOI: 10.5061/dryad.q8m4f/43
title: 3X-1_S25_L001_R1_001.fastq
DOI: 10.5061/dryad.q8m4f/44
title: 3X-1_S25_L001_R2_001.fastq
DOI: 10.5061/dryad.q8m4f/45
title: 3X-2_S26_L001_I1_001.fastq
DOI: 10.5061/dryad.q8m4f/46
title: 3X-2_S26_L001_R1_001.fastq
DOI: 10.5061/dryad.q8m4f/47
title: 3X-2_S26_L001_R2_001.fastq
DOI: 10.5061/dryad.q8m4f/48
title: 3X-3_S27_L001_I1_001.fastq
DOI: 10.5061/dryad.q8m4f/49
title: 3X-3_S27_L001_R1_001.fastq
DOI: 10.5061/dryad.rs7bm/1
title: RAD-Seq_CoralliumRubrum_FilteredData
DOI: 10.5061/dryad.sj179/1
title: Sequential strand displacement in a linear construct.

description: QCM-D data in .csv format. File contains overtone-normalized frequency changes for thirteenth overtone as a function of time, with the corresponding dissipation changes.
DOI: 10.5061/dryad.sj179/2
title: Strand displacement in a folded nanostructure (triangle)

description: QCM-D data in .csv format. File contains overtone-normalized frequency changes for thirteenth overtone as a function of time, with the corresponding dissipation changes. Data is provided for three cases: 1. triangle folded on surface and supplied with unfolded reverse complement of triangle. 2. pre-folded triangle supplied with unfolded reverse complement of triangle. 3. pre-folded triangle supplied with folded reverse complement of triangle.
DOI: 10.5061/dryad.t6r83/1
title: Data
DOI: 10.5061/dryad.v50r8/1
title: Data on individuals.

description: Data set with demographic, phenotypic and fitness data on individuals in three house sparrow populations. Two of the populations were subjected to artificial selection for increased (high) or decreased (low) tarsus length over the years 2002-2005. The final population was kept as a control. No phenotypic manipulations were performed in the populations in the subsequent seven years (2006-2012).
DOI: 10.5061/dryad.v50r8/2
title: Pedigree high

description: Pedigree for a house sparrow population on the island Leka in Norway, subjected to artificial selection to increase tarsus length (high). Includes phenotyped individuals alive in the years 2002-2012.
DOI: 10.5061/dryad.v50r8/3
title: Pedigree low

description: Pedigree for a house sparrow population at the island Vega in Norway, subjected to artificial selection to decrease tarsus length (low). Includes phenotyped individuals alive in the years 2002-2012.
DOI: 10.5061/dryad.vm0m6/1
title: FaceMatchingTimePressure_SupplementaryData

description: The data in this file provide percentage accuracy scores, mean correct response times, and signal detection scores for each subject, across both analyses used in Experiments 1 and 2.
DOI: 10.5061/dryad.0463n/5
title: Phylogeny Nexus file

description: The Nexus (.nex) file associated with the published phylogeny.
DOI: 10.5061/dryad.0463n/6
title: Phylogeny tree file

description: (.phy) tree file.
DOI: 10.5061/dryad.0mk47/1
title: Data for paper:Propagule pressure increase and phylogenetic diversity decrease community’s susceptibility to invasion

description: Propagule pressure increase and phylogenetic diversity decrease community’s susceptibility to invasion, includes data in columns: on community's id (refers to table 1 in paper), time point 1=3days, 3=9 days after invasion, propagule size of propagule, replicate=1 or 2 to denote technical replicates, Smarcescens=colony number of S.marc, other colonies=number of other colonies, all colonies=sum of Smarc and other colonies, MeanDIstToSerra = mean phylogenetic distance of resident community members to invader, VarDistToSerra= variance of phylodistances to invader
DOI: 10.5061/dryad.125p3/1
title: Mutation rate data

description: Data on genomic mutation rate measured for the paper.
DOI: 10.5061/dryad.125p3/2
title: Statistical analyses of mutation rate data

description: R script to analyze mutation rate data.
DOI: 10.5061/dryad.125p3/3
title: Figure 2

description: R script to make Figure 2.
DOI: 10.5061/dryad.125p3/4
title: genome analysis zip archive

description: Zip archive for genome analysis data and scripts
DOI: 10.5061/dryad.125p3/5
title: README

description: Readme for all files in this repository.
DOI: 10.5061/dryad.1s53q/1
title: Cease-et-al-Data_RoySocOpen_v03
DOI: 10.5061/dryad.22c0m/1
title: Table of experimental trials with recorded states of bodily damage

description: Experimental combinations of flow duration, sediment concentration and grain angularity with corresponding recorded states of bodily damage.
DOI: 10.5061/dryad.2hk19/1
title: Data for Pike et al. 2017

description: All relevant information available in the article.
DOI: 10.5061/dryad.31048.2
title: Data from: Combined analysis of extant Rhynchonellida (Brachiopoda) using morphological and molecular data
DOI: 10.5061/dryad.37d5m/2
title: Raw GPS data

description: Raw GPS data for the far site
DOI: 10.5061/dryad.37d5m/3
title: Raw GPS data

description: Raw GPS data for the near site.
DOI: 10.5061/dryad.37d5m/4
title: Raw accelerometer data

description: Raw accelerometer data from the far site. Column headings: Seconds, X-axis (g-force; forward-backward on the bird), Y-axis (g-force; left-right on the bird), Z-axis (g-force, up-down on the bird), light (LUX), temperature (degrees Celsius). Note: there appears to be some problems with the measurements from light and temperature so these were not used in our study.
DOI: 10.5061/dryad.37d5m/5
title: Raw accelerometer data

description: Raw accelerometer data for the near site. Column headings: Seconds, X-axis (g-force; forward-backward on the bird), Y-axis (g-force; left-right on the bird), Z-axis (g-force, up-down on the bird), light (LUX), temperature (degrees Celsius). Note: there appears to be some problems with the measurements from light and temperature so these were not used in our study.
DOI: 10.5061/dryad.418p5/1
title: ini_files.tar.gz
DOI: 10.5061/dryad.418p5/2
title: simulation_results.tar.gz
DOI: 10.5061/dryad.418p5/3
title: ReadMe.pdf
DOI: 10.5061/dryad.43pb4/1
title: Ball moving task data
DOI: 10.5061/dryad.51g4t/1
title: Female Response data

description: Raw data of female response to each stimulus
DOI: 10.5061/dryad.51g4t/2
title: Stimulus List

description: List of the experimental stimuli with a short description. Stimulus numbers correspond to stimulus ID in "Data.txt" file. See ReadMe for further details.
DOI: 10.5061/dryad.539j4/1
title: Heterogeneous cyclic selection simulator

description: This C source code simulates evolutionary dynamics under heterogeneous cyclic selection in a subdivided population. Short description of input files is given in comments in the source code.
DOI: 10.5061/dryad.539j4/2
title: sample trajectory - drift
DOI: 10.5061/dryad.539j4/3
title: sample parameter file
DOI: 10.5061/dryad.6kd25/1
title: Code & Simulations for Fig. A.1-A.3 in SI

description: In the Mathematica Notebook we provide the programming code  for numerical calculations, simulations and the simulation data used for Figures A.1, A.2 and A.3 of Section A of the Supporting Information. Please find detailed commentary on the codes in the Mathematica Notebook.
DOI: 10.5061/dryad.6q12q/1
title: Segev et al., 2017; data file

description: Colony behavioral and productivity data
DOI: 10.5061/dryad.74f2r.2
title: Data from: Fossils matter: improved estimates of divergence times in Pinus reveal older diversification
DOI: 10.5061/dryad.8vr04/1
title: Data_Hylander_Nemomissa

description: Environmental data and species occurrence data from all sites. See the ReadMe file for more explanations.
DOI: 10.5061/dryad.bp79f/1
title: JPEdawsonSA5

description: Appendix 5: Species traits and source used in the analysis for the paper: 
 'Plant traits in propagule banks and standing vegetation reveal flooding alleviates impacts of agriculture on wetland restoration'

Ethics: data acquisition, archiving and use do so in an ethicial manner, in particular, we believe that those individuals 
whose time, efforts and intellect designed and created the studies are acknowledged appropriately.
As a condition for use of the dataset we request that users agree: 
1. to notify the database custodians (Samantha Dawson) if the dataset is used in any publication,
2. To provide database custodians with formal recognition, that at their discreation, may include co-authorship or acknowledgements, 
3. that values sourced from other studies have the same curtosy extened to them.

Metadata: Spelling matches species names derived from internet, Specific Leaf Area (SLA) is expressed in mm2 mg-1, 
'Field study' referes to measurements taken by the lead author in the vicinity of the study site
For full reference list see Appendix 4
DOI: 10.5061/dryad.bp79f/2
title: JPEdawsonSA4

description: Appendix 4: Reference list and sources of information for data found in Appendix 5 that was not collected in the field.
DOI: 10.5061/dryad.dg513/1
title: Assembly, variant, and cline data for paper

description: This package contains four sets of data:
- cline_allele_frequencies: inferred allele frequencies at each SNP (filtered & unfiltered) at each contact zone
- probes: probes used in exome capture for each contact zone
- target_assemblies: annotated assemblies generated from exome capture data and used as pseudo-reference genome
- variants: variant call format files (VCFs) generated by aligning read data from the contact zone to the PRG
DOI: 10.5061/dryad.j054r/1
title: Fatty acid and proximate composition data of Brazilian freshwater fish species from different families

description: Proximate composition, fatty acid profile (% of total fatty acids) and nutritional quality indices in fillets of five Brazilian freshwater fish species from different families
DOI: 10.5061/dryad.kj73v/1
title: Szymkowiak et al - Behav Ecol dataset

description: Includes data worksheet that detail: 1. the abundance of wood warblers, chiffchaffs, blackcaps, and tits on experimental plots; 2. dates of arrival of first wood warbler males to study plots; 3. temporal patterns of settlement of wood warbler males on study plots.
DOI: 10.5061/dryad.kk33f/1
title: Patrol data

description: Patrol #: A unique identifier for each of 284 patrols. Date = Date each patrol occurred. Male = For each patrol, each male who was present in the community and &gt;=13 years when the patrol ocurred is listed in his own row. Patrol participation = whether the male in that row participated in the patrol (1) or not (0). Age squared = the male's age in years at the time of the patrol, squared. Rank: the male's standardized dominance rank in the year the patrol occurred. Paternity success = at the time of the patrol, the sum of the relatedness values (0.5) to the male's offspring living in the community. Maternal relatedness = at the time of the patrol, the sum of the relatedness values to the male's close maternal relatives. See methods in supplementary info of original paper for details.
DOI: 10.5061/dryad.kv472/1
title: Supplementary data

description: Zipped folder containing genome assembly, genome annotation file, repeats file, SNP array data set and associated scripts
DOI: 10.5061/dryad.nc571/1
title: Processing inaccurate information data
DOI: 10.5061/dryad.ns315/1
title: Gene_Differential_Expression_Results

description: Spreadsheet showing the reletive expression levels of genes (in transcripts per million reads, TPM) in skin and non-skin tissue samples estimated using RSEM and Bowtie 2. Differentially expressed genes between skin colours and skin and non-skin were identified using edgeR.
DOI: 10.5061/dryad.p17r6/1
title: PERMANOVA_data_within-analysis

description: This file includes geolocation data of repeatedly tracked individuals for permutational multivariate analysis of variance.
DOI: 10.5061/dryad.p17r6/2
title: PERMANOVA_data_between-analysis

description: This file includes geolocation data of singly tracked individuals for permutational multivariate analysis of variance.
DOI: 10.5061/dryad.p24q3/8
title: dataframe for Figure 2

description: This file contains a simple table used to create Figure 2, which summarizes patterns of pollinator abundance during our study.
DOI: 10.5061/dryad.p24q3/9
title: R script

description: R script to reproduce analyses and figures presented in this study.
DOI: 10.5061/dryad.p3r38/1
title: Sperm Competition Experiment

description: Outcome of Sperm Competition Trials – Column descriptions –

mother_ID (categorical): Identity of the mother –
father1_ID (categorical): Identity of the father from the polyandrous line –
father2_ID (categorical): Identity of the father from the polyandrous line –
order (numerical): Mating order position of the first male (father1) –
litterSize (numerical): Number of offspring produced –
mother_Genotype (categorical): t genotype of the mother –
father1_Genotype (categorical): t genotype of father1 –
father2_Genotype (categorical): t genotype of father2 –
father1_Share (numerical): Paternity share of father1 –
father2_Share (numerical): Paternity share of father2 –
father1_tsired (numerical): Number t genotypes among the offspring sired by Father1 –
father2_tsired (numerical): Number t genotypes among the offspring sired by Father2
DOI: 10.5061/dryad.p3r38/2
title: t Frequencies in the Selection Lines

description: t Genotypes of individuals from the 8 selection lines from generations 0, 12,16, and 19 – Column descriptions –
ID (categorical): Identity of the animal –
Genotype (categorical): Genotype of the animal –
SelectionTreatment (categorical): The selection regime with M for monandrous and P for polyandrous –
Line (categorical): Selection line number (1–4 per treatment) –
Generation (numerical): Generation number of the animal
DOI: 10.5061/dryad.q8m4f/50
title: 3X-3_S27_L001_R2_001.fastq
DOI: 10.5061/dryad.q8m4f/51
title: 1X-2_S8_L001_R1_001.fastq
DOI: 10.5061/dryad.q8m4f/52
title: 2X-1_S16_L001_R1_001.fastq
DOI: 10.5061/dryad.q8m4f/53
title: 2X-1_S16_L001_R2_001.fastq
DOI: 10.5061/dryad.q8m4f/54
title: 2X-2_S17_L001_I1_001.fastq
DOI: 10.5061/dryad.qh47m/1
title: Daphnia_r_field_data

description: This file corresponds to the field population growth analyses. Values of r were calculated for Daphnia pulicaria in Lake Mendota (ME) and Lake Monona (MO) for years before (pre) and after (post) invasion by Bythotrephes. The start date is the first day of sampling each year. For example, a sample conducted on February 3 would have a start date = 34. The start density refers to the estimated density of Daphnia on the start date. Sampling was performed by the North Temperate Lakes LTER. All data are available at: https://lter.limnology.wisc.edu/.
DOI: 10.5061/dryad.qt834/1
title: Primate 6-way alignments

description: This dataset includes 4,770 six-way one-to-one orthologs from Cebus apella, published data for Homo sapiens, Pongo abelii, Papio anubis, Colobus angolensis and Saimiri boliviensis. These alignments are unfiltered PRANK alignments. Dataset also includes fasta ortholog files, that include IDs.
DOI: 10.5061/dryad.qt834/2
title: Primate 13-way alignments

description: This dataset includes 3,130 13-way one-to-one orthologs from Cebus apella, published data for Homo sapiens, Pongo abelii, Papio anubis, Colobus angolensis, Saimiri boliviensis, Pan troglodytes, Gorilla gorilla, Nomascus leucogenys, Chlorocebus aethiops, Macaca mulatta, Callithrix jacchus, Saguinus midas. These alignments are unfiltered PRANK alignments. Dataset also includes fasta ortholog files, that include IDs.
DOI: 10.5061/dryad.r6h4h/1
title: Sinus microbiologic culture

description: The results of sinus bacterial culture in healthy individuals
DOI: 10.5061/dryad.sj179/3
title: The rotary motor and its components.

description: QCM-D data in .csv format. File contains overtone-normalized frequency changes for thirteenth overtone as a function of time, with the corresponding dissipation changes.Data corresponds to four experiments: 1. folded square A supplied with unfolded square B. 2. folded blocked square A supplied with unblocking strand and then unfolded square B. 3. folded square A supplied with folded square B. 4. full motor supplied sequentially with both unblocking strands.
DOI: 10.5061/dryad.sj179/4
title: Assembly of motor components

description: Agarose gel showing assembly of a surface connector, two folded squares and an unfolded square.
DOI: 10.5061/dryad.sj179/5
title: Polyacrylamide gel presented in Fig 4(d) of paper

description: Polyacrylamide gel, showing the most important bands. From left to right: unfolded square of type B, folded squares of both types (B then A) and assembled motor - ‘before’ and ‘after’ operation.
DOI: 10.5061/dryad.sj179/6
title: AFM images acquired in response to reviewer comments

description: AFM images of individual folded squares and assembled motors. The structures were extraordinarily difficult to image due to their small size. Consequently they adhered poorly to the substrate and were not well-resolved.
DOI: 10.5061/dryad.v50r8/4
title: Pedigree control

description: Pedigree for a house sparrow population at the island Hestmannøy in Norway. Includes phenotyped individuals alive in the years 2002-2012.
DOI: 10.5061/dryad.11j13/1
title: R_Analysis

description: This zip file contains all data and scripts needed to reproduce the results in the paper.
DOI: 10.5061/dryad.1d0m9/1
title: Oxidative status and fitness components in the Seychelles warbler

description: Data on oxidative status (dROMs=oxidative damage, OXY=plasma antioxidant capacity) and fitness components (reproductive output, survival) in the Seychelles warbler.
DOI: 10.5061/dryad.2tg0c/1
title: DGE_Tag.tar
DOI: 10.5061/dryad.2v075/1
title: Chimpanzee personality, performance, and motivation data

description: Contains performance and engagement data across 3 studies. Includes personality measures for individuals.
DOI: 10.5061/dryad.31048.2/10.2
title: figures_rhynchComb_08-03-16

description: R script for generating all figures in manuscript from provided R workspace file
DOI: 10.5061/dryad.31048.2/11.2
title: figures_for_EvolTalk_06-20-16

description: R script for generating all figures in associated Evolution 2016 from provided R workspace file
DOI: 10.5061/dryad.31048.2/20.2
title: README

description: README file describes the file type and contents of all files in this data repository.
DOI: 10.5061/dryad.31048.2/3.2
title: runScripts.zip

description: Zip file containing a necessary directory for recreating analyses
DOI: 10.5061/dryad.31048.2/4.2
title: datafiles.zip

description: Zip file containing a necessary directory for recreating analyses
DOI: 10.5061/dryad.31048.2/5.2
title: make_runI_06-29-15

description: R Script for creating MrBayes script for simulation-based sensitivity analyses
DOI: 10.5061/dryad.31048.2/7.2
title: rhynchComb_07-25-16

description: Rmarkdown script containing all topological comparison analyses
DOI: 10.5061/dryad.31048.2/8.2
title: rhynchComb_07-25-16

description: PDF generated from knitting Rmarkdown script containing all topological comparison analyses
DOI: 10.5061/dryad.31048.2/9.2
title: rhynchComb_workspace_07-25-2016.Rdata

description: Saved R Workspace from running Rmarkdown script containing all topological comparison analyses
DOI: 10.5061/dryad.35115/1
title: zebra finch sex ratio－paper

description: The brood sex ratio, brood size and other brood level data at zebra finch reproduction in this study.
DOI: 10.5061/dryad.35115/2
title: zebra finch selection original

description: Female zebra finches' preference on red- or green-bands male, and the consistence of this behaviour
DOI: 10.5061/dryad.35115/3
title: zebra finch all chicks

description: Nestlings' condition at female zebra finch reproduction in this study
DOI: 10.5061/dryad.3jq14/1
title: Pérez-Crespo et al_MAXENT_Psittacanthus_calyculatus

description: Psittacanthus_calyculatus_MAXENT_File: coordinates longitude and latitude of Psittacanthus calyculatus.
DOI: 10.5061/dryad.5bj1s/1
title: Tung et al_Oikos_2017_DryadData

description: This .xlsx file contains dispersal propensity and ability data for the selected (VB) and control (VBC) flies at three different time points. There were four replicate populations each of VB and VBC and for each of these populations, there were three measurement replicates. For each measurement replicate, we counted the number of male and female flies separately.
DOI: 10.5061/dryad.67fn1/1
title: Activity

description: Distance based categorization of successive half hour relocation intervals of all individuals as active (1) or passive (0). dist = straight line distance between locations, Sample_ID = Disguised Bear ID, Sample Year = Disguised Sample Year (1 – 7, 2007 - 2013), Sample_Bearyear = Identifier for a given bear being sampled in a given year. To protect ongoing publication efforts x/y coordinates and actual BearIdentifications have been removed.
DOI: 10.5061/dryad.67fn1/2
title: ExtractedActivityDensCoef

description: Estimates of activity density as a function of time of day (timeRad) for each Sample Bearyear.TimeRad = time in radians; ActivityDensity = estimated activity denisty extracted from denisty curves constructed using the function "densityPlot" from the overlap package (Meredeith & Ridout 2014); AverageCoef = Average Activity Density; Coef_Dev = Deviation from the average density coefficient. Negative numbers indicate that the individual was more often inactive than active at the given time, positive values that the individual was more often active than inactive.
Sample_ID = Disguised Bear ID, Sample Year = Disguised Sample Year (1 – 7, 2007 - 2013), Sample_Bearyear = Identifier for a given bear being sampled in a given year. To protect ongoing publication efforts actual BearIdentifications have been removed.
DOI: 10.5061/dryad.67fn1/3
title: ForPCA

description: Seven activity measures extracted from the activity density curve (TimeMinAct, TimeMaxAct, Variability, AUCRisk, PropRiskAct, TimeActive), age sex, fate and environmental covariates measured within the home range of an individual (bear.density, proportion berry habitat, road density)
DOI: 10.5061/dryad.67fn1/4
title: ForTacticRepeat

description: For individuals which were observed in multiple years we determined the focal strategy (the strategy most used by an individual). For each year we then categorized the observed strategy (“cluster”) as focal or not (“in.focal” = TRUE/FALSE). We further simulated 10 random assignments (real = FALSE) into either of the four “clusters” which were then also categorized as belonging to the focal strategy or not (“in focal”).