cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/127ph-f1978
title: Hn limited in CO2 for 6 hrs

description: H. neapolitanus cell h11 limited in CO2 for 6 hours
description: <strong>Tilt Series Date:</strong> 2007-04-18</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 155.0 eV/Å²,  defocus: -14.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in CO2 for 6 hours</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-18-10/rawdata/</p>Hn6h11_155e_14um_apr18_07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-18-10/rawdata/Hn6h11_155e_14um_apr18_07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn6h11_155e_14um_apr18_07_bin1.rec,  Reconstruction (Pixel Size 0.961 nm), 406.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-18-10/3dimage_4178/Hn6h11_155e_14um_apr18_07_bin1.rec"
        > <i class="download icon"></i> Download </a></p>

        Hn6h11_155e_14um_apr18_07_bin2_rec_5ave.mov,  file associated to 3D Image #4178, 16.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-18-10/file_2186/Hn6h11_155e_14um_apr18_07_bin2_rec_5ave.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6w7z5-9bj45
title: Hn in 5% CO2

description: H. neapolitanus cell h6 in 5% CO2
description: <strong>Tilt Series Date:</strong> 2007-05-03</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-05-03-1/rawdata/</p>Hn0h6_190e13um18K_may3_07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-05-03-1/rawdata/Hn0h6_190e13um18K_may3_07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn0h6_190e13um18K_may3_07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 482.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-05-03-1/3dimage_3931/Hn0h6_190e13um18K_may3_07_bin1.rec"
        > <i class="download icon"></i> Download </a></p>

        Hn0h6_190e13um18K_5ave_rec.mov,  file associated to 3D Image #3931, 10.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-05-03-1/file_1580/Hn0h6_190e13um18K_5ave_rec.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.uwwcdb
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glaniopsis hanitschi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033067-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/abrw5-anj21
title: T. intermedia autotrophic 4 hrs

description: T. intermedia cell h2 grown in autotrophic conditions for 4 hours
description: <strong>Tilt Series Date:</strong> 2007-11-15</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 4 hours</p>
  civ2007-11-15-6_slicer6724.jpg: FIlament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-15-6/rawdata/</p>Ti_a4h_h2_200e13um18K_15nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-15-6/rawdata/Ti_a4h_h2_200e13um18K_15nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a4h_h2_200e13um18K_15nov07_crop_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 85.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-15-6/3dimage_4248/Ti_a4h_h2_200e13um18K_15nov07_crop_bin2.rec"
        > <i class="download icon"></i> Download </a></p>

        Contam_Ti_a4h_h2_200e13um18K_15nov07_crop_bin2_s123.tif,  1.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5wdxr-kvy52
title: Caulobacter 1628

description: Crescentin overexpression
description: <strong>Tilt Series Date:</strong> 2007-07-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Christine Jacobs Wagner</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2007-07-06-3/rawdata/</p>CC1628_0706070_3.st,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2007-07-06-3/rawdata/CC1628_0706070_3.st"
        > <i class="download icon"></i> Download </a></p>

        CC1628_0706070_3_full.rec,  Reconstruction (Pixel Size 1.922 nm), 616.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2007-07-06-3/3dimage_901/CC1628_0706070_3_full.rec"
        > <i class="download icon"></i> Download </a></p>

        CC1628_0706070_3_fullmedian.rec,  Reconstruction (Pixel Size 1.922 nm), 616.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2007-07-06-3/3dimage_902/CC1628_0706070_3_fullmedian.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nky5w-nmv56
title: archaeon

description: Raw data files of archaeon
description: <strong>Tilt Series Date:</strong> 2006-05-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-05-30-1/rawdata/</p>Archea060530_sam4_sq11_h01.mrc,  Tilt Series (Pixel Size 0.66 nm), 352.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-05-30-1/rawdata/Archea060530_sam4_sq11_h01.mrc"
        > <i class="download icon"></i> Download </a></p>

        Archea060530_sam4_sq11_h01bin2_rec.mrc,  Reconstruction (Pixel Size 1.32 nm) bin 2, 243.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-05-30-1/3dimage_2084/Archea060530_sam4_sq11_h01bin2_rec.mrc"
        > <i class="download icon"></i> Download </a></p>

        Archea060530_sam4_sq11_h01bin2_rec_cut_bnad_lamd003_avrg4_0030.mrc,  17.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-05-30-1/3dimage_2085/Archea060530_sam4_sq11_h01bin2_rec_cut_bnad_lamd003_avrg4_0030.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.nm974k
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (038a1133-81e2-42e8-a4dd-b5ac246eb082, 90fd6680-349f-11d8-aa2d-b8a03c50a862, ae447c50-b8a8-11d8-92a4-b8a03c50a862, 62431bdf-fa0c-452b-afce-be14884a47ff, 838537fc-4aeb-4980-8b58-97fbdcd1d91a, 9d77fdeb-100f-4b29-98ad-4effdd824457, 85be57ed-f187-49c9-b7ff-eaa622e06217, 7b8aff00-a9f8-11d8-944b-b8a03c50a862)",
 "TaxonKey is Couroupita guianensis"
 ]
}

 The dataset includes 636 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033068-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/evy21-z8k95
title: E. coli delta-CheA

description: Strain RP9535 (delta CheA)
description: <strong>Tilt Series Date:</strong> 2014-05-13</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> MG1655</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-11/rawdata/</p>RP9535Tomo0011.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-11/rawdata/RP9535Tomo0011.mrc"
        > <i class="download icon"></i> Download </a></p>

        RP9535Tomo0011SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 6.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-11/3dimage_46609/RP9535Tomo0011SIRT.rec"
        > <i class="download icon"></i> Download </a></p>

        RP9535Tomo0011SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 6.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-11/3dimage_46611/RP9535Tomo0011SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9d474-wfb03
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-60/3dimage_73072/</p>20160104_Vcholerae_MSHA_10060_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-60/3dimage_73072/20160104_Vcholerae_MSHA_10060_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10060_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-60/3dimage_72104/20160104_Vcholerae_MSHA_10060_full.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10060.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-60/rawdata/20160104_Vcholerae_MSHA_10060.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/drk7p-btv12
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-37/3dimage_73042/</p>20160104_Vcholerae_MSHA_10037_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 14.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-37/3dimage_73042/20160104_Vcholerae_MSHA_10037_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10037_part121_4.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-37/3dimage_72058/20160104_Vcholerae_MSHA_10037_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10037.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-37/rawdata/20160104_Vcholerae_MSHA_10037.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9ybry-cp346
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2018-12-07</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-07-98/rawdata/</p>conjugationP18.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-07-98/rawdata/conjugationP18.mrc"
        > <i class="download icon"></i> Download </a></p>

        conjugationP18_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-07-98/3dimage_99113/conjugationP18_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rkcb8-n2w02
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2018-10-22</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-10-22-77/rawdata/</p>Fjoh2_8.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-10-22-77/rawdata/Fjoh2_8.mrc"
        > <i class="download icon"></i> Download </a></p>

        Fjoh2_8_full.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-10-22-77/3dimage_98321/Fjoh2_8_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16866530
title: EAMO-BBMO time-series: rDNA 16S V4V5 ASV table (dada2)

description: This repository contains the 16S rRNA ASV table generated from rDNA metabarcoding sequencing data obtained from two coastal microbial time-series observatories located at contrasting latitudes: the Equatorial Atlantic Microbial Observatory (EAMO, 6°S) and the Blanes Bay Microbial Observatory (BBMO, 41°N, Mediterranean Sea). Monthly surface seawater samples were collected over 41 months (April 2013–August 2016) and size-fractionated into small (0.22–3 µm) and large (>3 µm) fractions. DNA was extracted and PCR amplified targeting the V4–V5 region (Parada et al. 2016) of the 16S rRNA gene, followed by Illumina sequencing. The ASVs were generated and taxonomically assigned using the DADA2 pipeline (Callahan et al., 2016) with the SILVA v.138 database (Quast et al., 2013)⁠.The raw DNA sequences obtained in this study were deposited in the European Nucleotide Archive (http://www.ebi.ac.uk/ena) under accession number PRJEB48035 for the BBMO, and in the NCBI (https://www.ncbi.nlm.nih.gov/) under accession number PRJNA414763 for the EAMO.
description: The EAMO data were generated with funds from FAPESP (process #2014/13139-3), CNPq (process 474759/2013-0), and the Brazilian Science Without Borders Program (BJT 013/2012; PVE 400313-2014-6). The BBMO data were obtained thanks to project DEVOTES (FP7-ENV-2012-308392), MINIME (PID2019-105775RB-I00), and MAORI (PID2022-136281NB-I00) as well as many others that have maintained the observatory.
DOI: 10.5281/zenodo.16866531
title: EAMO-BBMO time-series: rDNA 16S V4V5 ASV table (dada2)

description: This repository contains the 16S rRNA ASV table generated from rDNA metabarcoding sequencing data obtained from two coastal microbial time-series observatories located at contrasting latitudes: the Equatorial Atlantic Microbial Observatory (EAMO, 6°S) and the Blanes Bay Microbial Observatory (BBMO, 41°N, Mediterranean Sea). Monthly surface seawater samples were collected over 41 months (April 2013–August 2016) and size-fractionated into small (0.22–3 µm) and large (>3 µm) fractions. DNA was extracted and PCR amplified targeting the V4–V5 region (Parada et al. 2016) of the 16S rRNA gene, followed by Illumina sequencing. The ASVs were generated and taxonomically assigned using the DADA2 pipeline (Callahan et al., 2016) with the SILVA v.138 database (Quast et al., 2013)⁠.The raw DNA sequences obtained in this study were deposited in the European Nucleotide Archive (http://www.ebi.ac.uk/ena) under accession number PRJEB48035 for the BBMO, and in the NCBI (https://www.ncbi.nlm.nih.gov/) under accession number PRJNA414763 for the EAMO.
description: The EAMO data were generated with funds from FAPESP (process #2014/13139-3), CNPq (process 474759/2013-0), and the Brazilian Science Without Borders Program (BJT 013/2012; PVE 400313-2014-6). The BBMO data were obtained thanks to project DEVOTES (FP7-ENV-2012-308392), MINIME (PID2019-105775RB-I00), and MAORI (PID2022-136281NB-I00) as well as many others that have maintained the observatory.
DOI: 10.34740/kaggle/dsv/12839318
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.22002/pphd5-7pc61
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2018-11-08</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-57.0°, 57.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-67/rawdata/</p>Fjoh4_34.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.1 GB  
        
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        Fjoh4_34_full.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
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