cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0906207.09fu
title: SH0906207.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0906208.09fu
title: SH0906208.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.8332910
title: RADCURE_radiomic_MAE

description: RADCURE_radiomic_MAE data object generated by ORCESTRA.
DOI: 10.5281/zenodo.8332909
title: RADCURE_radiomic_MAE

description: RADCURE_radiomic_MAE data object generated by ORCESTRA.
DOI: 10.25919/4qpc-7g75
title: Parkes observations for project P1171 semester 2023APRS_07

description: The origin of Fast Radio Bursts (FRBs) is still unclear with a plethora of theoretical models for their origin. Several models predict associated multi-wavelength emission, but previous searches for optical, X-ray or gamma-ray counterparts of FRBs have not led to any detection. The Galactic magnetar SGR 1935+2154A has been observed to simultaneously emit FRB-like bursts and X-ray flares, which suggests that also extragalactic FRB sources may exhibit X-ray counterparts. Because of the high cost of X-ray satellites and in face of the relatively low FRB detection probability in their small field of view, coordinated radio and X-ray observations are logistically very difficult to set up. We propose a new approach using the X-ray satellite XMM-Newton and the Parkes/Murriyang radio telescope to put constraints on the theoretical models: We aim to conduct shadowing observations with the Parkes telescope to search for new FRBs in fields that are simultaneously covered by XMM-Newton. We hereby target regular XMM observations of nearby (low-z) galaxies, to increase our detection chances of possibly associated X-ray emission. In case of an FRB detection in the radio band, we will have guaranteed simultaneous X-ray coverage and will get detailed information about the associated X-ray spectrum and light curve since all XMM-Newton data will become public a year after the observation.
DOI: 10.25919/kchk-w774
title: Parkes observations for project P455 semester 2023APRS_05

description: This project is to continue timing and profile studies of the first double-pulsar system, a unique laboratory for gravitational physics. Important results published in our 53-page Phys. Rev. X paper (Kramer et al., December 2021) include the first measurements of higher-order light-propagation effects and of the relativistic deformation of the orbit and highlight the importance of a long term observational campaign, including VLBI observations, for this remarkable system. The main aims of this proposal are to provide the strongest tests to date for general relativity and to measure for the first time the moment-of-inertia of a neutron star. Additionally, we will determine the system geometry and map the pulsar beams via geodetic precession. We will exploit the high sensitivity and broad bandwidth of the UWL receiver.
DOI: 10.5281/zenodo.8332912
title: Code and data for "Attentional effects on local V1 microcircuits explain selective V1-V4 communication"

description: Code and data to replicate the analysis and figures of the publication "Attentional effects on local V1 microcircuits explain selective V1-V4 communication"
DOI: 10.5281/zenodo.8332911
title: Code and data for "Attentional effects on local V1 microcircuits explain selective V1-V4 communication"

description: Code and data to replicate the analysis and figures of the publication "Attentional effects on local V1 microcircuits explain selective V1-V4 communication"
DOI: 10.57967/hf/1088
title: scidcc-instructions
DOI: 10.7931/yxa1-kn90
title: Site records survey of Nettles and Admiral butterflies
DOI: 10.5281/zenodo.8332973
title: Metadata related to Optimized Intercropping System (NCBI PRJNA928765)

description: <strong>The Sahel of W Africa is a climate change hotspot, where soil degradation and recurring drought significantly reduce agricultural productivity. Erratic rainfall, exacerbated by climate change, t contributes to ongoing and future food insecurity in this region. The staple crop, pearl millet (Pennisetum glaucum), is grown by subsistence farmers during the rainy season without fertilizer or irrigation (conditions also desired for US domestic biofuel cultivation). Indigenous farming practices demonstrate one solution: where farmers intercrop with an native woody shrub (Guiera senegalensis), millet drought resilience - and crop yields - are dramatically increased. One mechanism of this beneficial interaction: shrubs perform hydraulic redistribution of water to surface soil, assisting crops through growing-season drought periods. Additionally, the moister and more nutrient rich soils under the shrub canopy harbor a distinct and active microbial community; this work examines the role of these microbes in aiding the millet. We have characterized this potential in partnership with the Joint Genome Institute (JGI, project number 505730) to metagenomically sequence the millet rhizo- and endo-sphere communities, with and without shrub intercropping, in long-term experimental plots in Senegal. Using the framework of known plant-microbe beneficial interactions we are analyzing metagenomes for genes and genomes related to plant growth promotion, and metagenomic data is publicly available via NCBI under PRJNA928765. Here, we publish soil chemical, plant biomass, and PLFA data obtained from the OSS during the 2019 sampling season and corresponding 2020 dry season. </strong>
DOI: 10.5281/zenodo.8332972
title: Metadata related to Optimized Intercropping System (NCBI PRJNA928765)

description: <strong>The Sahel of W Africa is a climate change hotspot, where soil degradation and recurring drought significantly reduce agricultural productivity. Erratic rainfall, exacerbated by climate change, t contributes to ongoing and future food insecurity in this region. The staple crop, pearl millet (Pennisetum glaucum), is grown by subsistence farmers during the rainy season without fertilizer or irrigation (conditions also desired for US domestic biofuel cultivation). Indigenous farming practices demonstrate one solution: where farmers intercrop with an native woody shrub (Guiera senegalensis), millet drought resilience - and crop yields - are dramatically increased. One mechanism of this beneficial interaction: shrubs perform hydraulic redistribution of water to surface soil, assisting crops through growing-season drought periods. Additionally, the moister and more nutrient rich soils under the shrub canopy harbor a distinct and active microbial community; this work examines the role of these microbes in aiding the millet. We have characterized this potential in partnership with the Joint Genome Institute (JGI, project number 505730) to metagenomically sequence the millet rhizo- and endo-sphere communities, with and without shrub intercropping, in long-term experimental plots in Senegal. Using the framework of known plant-microbe beneficial interactions we are analyzing metagenomes for genes and genomes related to plant growth promotion, and metagenomic data is publicly available via NCBI under PRJNA928765. Here, we publish soil chemical, plant biomass, and PLFA data obtained from the OSS during the 2019 sampling season and corresponding 2020 dry season. </strong>
DOI: 10.6084/m9.figshare.22799042
title: MII_LM_Mikrobio_Logical_Model.json

description: FHIR Logical Data model for microbiology data
DOI: 10.6084/m9.figshare.22799042.v1
title: MII_LM_Mikrobio_Logical_Model.json

description: FHIR Logical Data model for microbiology data
DOI: 10.6084/m9.figshare.23502312
title: Deep Learning Models to Identify Common Phases Across Material Systems from X-ray Diffraction

description: Datasets of synthesized x-ray diffraction patterns corresponding to mixed-phase samples from binary metal alloy material systems spanning 23 elements. Each of the two datasets is based on crystal structures from a different source: (1) experimentally measured from the Inorganic Crystal Structure Database and (2) theoretically predicted from the Materials Project. These datasets were used in our work under review, "Deep Learning Models to Identify Common Phases Across Material Systems from X-ray Diffraction," to train and assess convolutional neural network models to rapidly identify samples containing large fractions of A15-type phases.
DOI: 10.6084/m9.figshare.23502312.v1
title: Deep Learning Models to Identify Common Phases Across Material Systems from X-ray Diffraction

description: Datasets of synthesized x-ray diffraction patterns corresponding to mixed-phase samples from binary metal alloy material systems spanning 23 elements. Each of the two datasets is based on crystal structures from a different source: (1) experimentally measured from the Inorganic Crystal Structure Database and (2) theoretically predicted from the Materials Project.
DOI: 10.25919/mv78-1x86
title: Parkes observations for project P1054 semester 2023APRS_14

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Twenty sources have been discovered in targeted observations of Fermi unidentified point sources, one in association with a Supernova Remnant, 13 in the Magellanic Clouds, 71 in Globular Clusters and 74 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries.
DOI: 10.25919/jtye-bg23
title: Parkes observations for project P1165 semester 2023APRS_07

description: We carried out a pilot FAST survey at intermediate Galactic latitudes and discovered five new pulsars (including two millisecond pulsars, MSPs). We confirmed all five pulsars and timed two pulsars (J1826-0049 and J1849+1000) during the 2022OCTS semester. A coherent timing solution was obtained for J1826-0049 (4.59 ms) and it is in a 6.7-day orbit with a white dwarf companion. The other pulsar, J1849+1000, turned out to be potentially exotic. While its large spin period variation can be fitted by a 26-day circular orbit with a massive companion, the residuals show strong quasi-periodic variations, which suggest the existence of a third object in an inner orbit. If confirmed, J1849+1000 will be in a stellar triple system with an outer orbit of 26 days and an inner orbit of a few days. This makes it potentially a unique system for tests of gravitational theories and understanding the formation and evolution of triple systems. Here we propose to continue our timing of J1826-0049 and J1849+1000. The goal is to refine our measurement of the parameters of J1826-0049 and understand the nature of J1849+1000
DOI: 10.25451/flinders.24082680
title: <b>Cues to individuality in greylag goose faces: algorithmic discrimination and behavioral field tests</b>

description: Data collected to investigate individuality cues in greylag geese
DOI: 10.25451/flinders.24082680.v1
title: <b>Cues to individuality in greylag goose faces: algorithmic discrimination and behavioral field tests</b>

description: Data collected to investigate individuality cues in greylag geese
DOI: 10.25919/gvty-ya35
title: Parkes observations for project P1177 semester 2023APRS_06

description: We propose to time a high Galactic latitude millisecond pulsar, J1947-18, which was previously identified as isolated. Recently, during the re-processing of Parkes archival data (Project code: P1059), we found that this pulsar is in a binary system. This pulsar was originally discovered in archival data of the intermediate and high Galactic latitude parts of the Southern High Time Resolution Universe pulsar survey and have rotational period of 2.60 ms and DM of 25 pc cm-3. Here we propose make use of Parkes non-Galactic observing time and confirm the nature of this potential binary and measure its spin and orbital parameters. This information could lead to new opportunities of measuring neutron star mass, testing gravitational theories, and MSPs formation channels at high galactic latitudes.
DOI: 10.5281/zenodo.8333016
title: Site data and PLFA obtained along a rainfall and soil type gradient in the Sahel region of West Africa 2019-2020 (PRJNA930013)

description: The Sahel of West Africa is a vulnerable biome that is experiencing rapid population growth, agricultural intensification, and soil degradation that threatens food security. A potential solution is intercropping with the indigenous shrub, <em>Guiera senegalensis</em>, that coexists with crops to varying degrees in farmers’ fields throughout the Sahel. Previous research of the Optimized Shrub-intercropping System (OSS) with <em>G. senegalensis</em> (high density of ~1200 1500 shrubs ha<sup>-1</sup> ) with annual incorporation of coppiced residue) has been shown to dramatically improve pearl millet (<em>Pennisetum glaucum</em>) yield; attributed in part to improved soil quality, nutrient availability, water use efficiency and harboring a distinct and active microbial community that may confer benefits to surrounding crops. Whether this microbial response is consistent over a climate and soil type gradient in farmers’ fields has not been investigated. Therefore, the objective was to determine the microbiomes and metabolic pathways of millet root zone soil in the presence or absence of <em>G. senegalenis</em>, sampled along a north-south soil and rainfall gradient in farmers’ fields. The experimental design was a completely randomized 3 X 2 factorial (2 landscape replications) with the following treatments: three rainfall (450 to 750 mm per annum)/soil type gradient sites north to south in the Senegal Peanut Basin and two sampling location treatments (millet root zone soil within and outside the influence of the <em>G.</em> <em>senegalensis</em>). <em>G. senegalensis</em> shifted certain predicted bacterial metabolic pathways and enriched certain bacterial and fungal genera, some of which are known to have plant growth promoting properties. These positive shrub effects were most evident at the northern site that has low rainfall and low organic matter soils. Here we share soil chemical, plant and PLFA datasets obtained in the 2019- 2020 sampling seasons and related to metagenomic data publicly available via NCBI PRJNA930013.
DOI: 10.5281/zenodo.8333015
title: Site data and PLFA obtained along a rainfall and soil type gradient in the Sahel region of West Africa 2019-2020 (PRJNA930013)

description: The Sahel of West Africa is a vulnerable biome that is experiencing rapid population growth, agricultural intensification, and soil degradation that threatens food security. A potential solution is intercropping with the indigenous shrub, <em>Guiera senegalensis</em>, that coexists with crops to varying degrees in farmers’ fields throughout the Sahel. Previous research of the Optimized Shrub-intercropping System (OSS) with <em>G. senegalensis</em> (high density of ~1200 1500 shrubs ha<sup>-1</sup> ) with annual incorporation of coppiced residue) has been shown to dramatically improve pearl millet (<em>Pennisetum glaucum</em>) yield; attributed in part to improved soil quality, nutrient availability, water use efficiency and harboring a distinct and active microbial community that may confer benefits to surrounding crops. Whether this microbial response is consistent over a climate and soil type gradient in farmers’ fields has not been investigated. Therefore, the objective was to determine the microbiomes and metabolic pathways of millet root zone soil in the presence or absence of <em>G. senegalenis</em>, sampled along a north-south soil and rainfall gradient in farmers’ fields. The experimental design was a completely randomized 3 X 2 factorial (2 landscape replications) with the following treatments: three rainfall (450 to 750 mm per annum)/soil type gradient sites north to south in the Senegal Peanut Basin and two sampling location treatments (millet root zone soil within and outside the influence of the <em>G.</em> <em>senegalensis</em>). <em>G. senegalensis</em> shifted certain predicted bacterial metabolic pathways and enriched certain bacterial and fungal genera, some of which are known to have plant growth promoting properties. These positive shrub effects were most evident at the northern site that has low rainfall and low organic matter soils. Here we share soil chemical, plant and PLFA datasets obtained in the 2019- 2020 sampling seasons and related to metagenomic data publicly available via NCBI PRJNA930013.
DOI: 10.5281/zenodo.8333020
title: Constructing a 3-D radially anisotropic crustal velocity model for Oklahoma by using full waveform inversion

description: The OK3D_Vp_Ani.csv and OK3D_Vs_Ani.csv is inverted 3-D compressive and shear velocity model proposed in the publication. Each file contains horizontally and vertically polarized velocity components and their relative perturbation with respect to the averaged 1-D velocity profile, as well as the RA defined in the paper, at each location (longitude, latitude, depth). These two files are stored in CSV format, and can be easily readed by pandas module in python environment.
DOI: 10.5281/zenodo.8333019
title: Constructing a 3-D radially anisotropic crustal velocity model for Oklahoma by using full waveform inversion

description: The OK3D_Vp_Ani.csv and OK3D_Vs_Ani.csv is inverted 3-D compressive and shear velocity model proposed in the publication. Each file contains horizontally and vertically polarized velocity components and their relative perturbation with respect to the averaged 1-D velocity profile, as well as the RA defined in the paper, at each location (longitude, latitude, depth). These two files are stored in CSV format, and can be easily readed by pandas module in python environment.
DOI: 10.25919/zzgf-8q39
title: Parkes observations for project P1171 semester 2023APRS_06

description: The origin of Fast Radio Bursts (FRBs) is still unclear with a plethora of theoretical models for their origin. Several models predict associated multi-wavelength emission, but previous searches for optical, X-ray or gamma-ray counterparts of FRBs have not led to any detection. The Galactic magnetar SGR 1935+2154A has been observed to simultaneously emit FRB-like bursts and X-ray flares, which suggests that also extragalactic FRB sources may exhibit X-ray counterparts. Because of the high cost of X-ray satellites and in face of the relatively low FRB detection probability in their small field of view, coordinated radio and X-ray observations are logistically very difficult to set up. We propose a new approach using the X-ray satellite XMM-Newton and the Parkes/Murriyang radio telescope to put constraints on the theoretical models: We aim to conduct shadowing observations with the Parkes telescope to search for new FRBs in fields that are simultaneously covered by XMM-Newton. We hereby target regular XMM observations of nearby (low-z) galaxies, to increase our detection chances of possibly associated X-ray emission. In case of an FRB detection in the radio band, we will have guaranteed simultaneous X-ray coverage and will get detailed information about the associated X-ray spectrum and light curve since all XMM-Newton data will become public a year after the observation.
DOI: 10.34740/kaggle/dsv/6448658
title: BBC News
DOI: 10.34740/kaggle/dsv/6448680
title: Polish-Ukrainian translations from Tatoeba
DOI: 10.34740/kaggle/dsv/6448686
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.6084/m9.figshare.22494418
title: Raw data files.zipCan you see the algae for the slime? Temporal patterns of biofilm food quality and quantity in lowland rivers

description: Raw dataAll coding and markdown, summary statistics for each stage of data manipulation for biofilm taxonomic composition and all raw data.
DOI: 10.6084/m9.figshare.22494412
title: Pre, post and rarefy statisticsCan you see the algae for the slime? Temporal patterns of biofilm food quality and quantity in lowland rivers

description: Pre, post and rerefy statisticsAll coding and markdown, summary statistics for each stage of data manipulation for biofilm taxonomic composition and all raw data.
DOI: 10.6084/m9.figshare.22494412.v1
title: Pre, post and rarefy statisticsCan you see the algae for the slime? Temporal patterns of biofilm food quality and quantity in lowland rivers

description: Pre, post and rerefy statisticsAll coding and markdown, summary statistics for each stage of data manipulation for biofilm taxonomic composition and all raw data.