cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17866/rd.salford.28904684.v2
title: Documents : Can We Talk About Death?

description: The Can We Talk About Death? Adaptation of Autobiographical Performance and Participant<br>Response in the Development of Performance to Enhance Conversations Around Death and<br>Dying project happened in 2023 at the University of Salford with a test performance (Can We<br>Talk About Death?) taking place in the May of that year. The project built on an earlier Practice<br>as Research (2019) entitled The Death, Dinner, and Performance: A Study of the Efficacy of<br>Performance to Enhance Conversations Around Death and Dying project. While that project<br>aimed to look at autobiographical performance as a prompt for difficult conversations in an<br>intimate setting, the Can We Talk About Death? project looked to adapt the earlier practice into<br>a public performance for an audience and in doing so, to explore that adaptation strategies<br>used in the process.
DOI: 10.6084/m9.figshare.12170313.v1
title: FSGD MAGs and SAGs

description: Binning of the 44 metagenomes (~1.3 TB sequenced data) resulted in the reconstruction of 1278 metagenome assembled genomes (MAGs; ≥50% completeness and ≤5% contamination). By augmenting this dataset with 564 sequenced single cell amplified genomes (SAGs; 114 with ≥50% completeness and ≤5% contamination), we present a comprehensive genomic database for the prokaryotic diversity of the oligotrophic deep groundwaters in the c fractures.
DOI: 10.6084/m9.figshare.13641296.v2
title: Raw data and After PSM data

description: Is hCG beneficial for NC-FET women with regular menstrual cycles?<br>
DOI: 10.6084/m9.figshare.20440587.v2
title: Study Data-set: Effects of therapeutic touch in preterm infants receiving nasal CPAP: A pilot trial

description: The present data-set corresponds to the development of a pilot test to determine the effect of therapeutic touch in the adaptation of the preterm newborn with CPAP. Within the Materials and methods, it is part of a quasi-experimental study, with a sample of 13 PTNIs who were given therapeutic touch for 15 minutes, with 2 daily sessions (6 am and 6 pm), with evaluation before and after. of the CRE: "Adaptation of the premature". To which the corresponding descriptive and analytical analysis was carried out. The data-set is in Long format to perform repeated measures analysis. <br> La presente base de datos corresponde al desarrollo de una prueba piloto para determinar el efecto del tacto terapéutico en la adaptación del recién nacido pretérmino con CPAP. Dentro de los Materiales y métodos, se enmarca en un estudio cuasi-experimental, con una muestra de 13 RNPT a quienes se les aplicó el tacto terapéutico durante 15 minutos, con 2 sesiones diarias (6 am y 6pm), con evaluación antes y después del CRE: “Adaptación del prematuro”. A lo cual se le realizó el análisis descriptivo y analitico correspondiente. La base se encuentra en formato Long para realizar los analisis de medidas repetidas
DOI: 10.6084/m9.figshare.21895716.v1
title: sharing_data.zip

description: The data to estimate the DPF for diffrent layers
DOI: 10.6084/m9.figshare.25513531.v4
title: Models

description: WinnowNet is a deep learning architecture for rescoring PSM candidates from multiple search engines for metaproteomics.
DOI: 10.6084/m9.figshare.26089320.v1
title: HiGTS_2018s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2018s3 contains the data from July 1, 2018 to September 30, 2018.
DOI: 10.6084/m9.figshare.27678117.v1
title: Genome Sequence of <i>Elsholtzia splendens</i>

description: <b>Haplotype-resolved chromosome-level genome sequence of </b><b><i>Elsholtzia splendens</i></b><b> (Nakai ex F.Maek.)</b>
DOI: 10.6084/m9.figshare.27719577.v1
title: A Large Crowdsourced Street View Dataset for Mapping Road Surface Types in Africa

description: This dataset includes Mapillary street view images and corresponding location data from Africa. The street view images are saved in JPG format, with each image assigned a unique ID number, totaling 200,000 images. The location data is represented as point vector data in Esri Shapefile format, where each point includes: a unique street view ID, longitude, latitude, and road surface type , with a total of 200,000 points. All data are projected using the World Geodetic System (WGS) 84 and the pseudo-Mercator coordinate system (EPSG: 3857) .
DOI: 10.6084/m9.figshare.3811680.v1
title: intropolis: exon-exon junctions across publicly available RNA-seq samples on the Sequence Read Archive

description: All exon-exon junctions detected by Rail-RNA across 21,504 human RNA-seq samples from the Sequence Read Archive, as studied in the paper "Human splicing diversity across the Sequence Read Archive" by Abhinav Nellore, Andrew E. Jaffe, Jean-Philippe Fortin, José Alquicira-Hernández, Leonardo Collado-Torres, Siruo Wang, Robert A. Phillips III, Nishika Karbhari, Kasper D. Hansen, Ben Langmead, and Jeffrey T. Leek. File formats are described at http://intropolis.rail.bio .
DOI: 10.17632/2y63y6zb8s
title: Extended data. Overcoming challenges in implementing condition monitoring services: expert elicitation

description: The document serves as an extended data file accompanying the research paper titled “Overcoming Challenges in Implementing Condition Monitoring Services: Expert Elicitation”, developed within the DIMAND project, funded by the EU’s Horizon 2020 program. It outlines the methodology and materials used for expert elicitation interviews aimed at exploring barriers and generating recommendations for successful implementing of Condition Monitoring Services within the context of digital servitization and advanced manufacturing. The document includes a participation invitation model for subject-matter experts, participant consent forms, an interview guide, a structured discussion framework, and a summary of key literature-based challenges—such as inadequate service integration, limited customer involvement, and misaligned business models—to support and enrich the expert dialogue. The research seeks to capture expert insights to analyse the factors limiting the market success of Condition Monitoring Services and to propose practical strategies for overcoming these challenges.
DOI: 10.6084/m9.figshare.14396384.v1
title: EU 28 Vehicle Registration Data, 2000-2017

description: Vehicle registration data by vehicle type for the European Union from 2000-2017. These data are used to develop EU Scenario.
DOI: 10.6084/m9.figshare.19625166.v1
title: CHVG Dataset

description: The CHVG dataset contains construction site images and their corresponding annotations. Please cite our paper "PPE detector: a YOLO-based architecture to detect personal protective equipment (PPE) for construction sites". Ferdous M, Ahsan SMM. 2022. PPE detector: a YOLO-based architecture to detect personal protective equipment (PPE) for construction sites. <em>PeerJ Computer Science</em> 8:e999 https://doi.org/10.7717/peerj-cs.999
DOI: 10.6084/m9.figshare.19793728.v1
title: Supplementary Material for: miR-142-5p Encapsulated by Serum-Derived Extracellular Vesicles Protects against Acute Lung Injury in Septic Rats following Remote Ischemic Preconditioning via the PTEN/PI3K/Akt Axis

description: This study intends to investigate the effects of miR-142-5p encapsulated by serum-derived extracellular vesicles (EVs) on septic acute lung injury (ALI) following remote ischemic preconditioning (RIPC) through a PTEN-involved mechanism. ALI was induced in rats by lipopolysaccharide (LPS) injection, 24 h before which RIPC was performed via the left lower limb. Next, the binding affinity between miR-142-5p and PTEN was identified. EVs were isolated from serum and injected into rats. The morphology of lung tissues, pulmonary edema, and inflammatory cell infiltration into lung tissues were then assessed, and TNF-α and IL-6 levels in serum and lung tissues were measured. The results indicated that RIPC could attenuate ALI in sepsis. miR-142-5p expression was increased in serum, lung tissues, and serum-derived EVs of ALI rats following RIPC. miR-142-5p could target PTEN to activate the PI3K/Akt signaling pathway. miR-142-5p shuttled by serum-derived EVs reduced pulmonary edema, neutrophil infiltration, and TNF-α and IL-6 levels, thus alleviating ALI in LPS-induced septic rats upon RIPC. Collectively, serum-derived EVs-loaded miR-142-5p downregulated PTEN and activated PI3K/Akt to inhibit ALI in sepsis following RIPC, thus highlighting potential therapeutic molecular targets against ALI in sepsis.
DOI: 10.6084/m9.figshare.27134469.v1
title: Supplementary Material for: Efficacy and Safety of Intravitreal Faricimab in Neovascular Age-Related Macular Degeneration, Diabetic Macular Edema, and Retinal Vein Occlusion: A Meta-Analysis

description: Introduction: Intravitreal anti-vascular endothelial growth factor (VEGF) therapy has become the mainstay of treatment in many retinal diseases. The comparative efficacy and safety of newer bispecific anti-VEGF/angiopoietin 2 (Ang2) agents in the treatment paradigm versus widely used monospecific anti-VEGF agents remains unclear.
Methods: A systematic literature search of MEDLINE, Embase, and Cochrane Library was conducted to identify comparative observational studies and randomized controlled trials published from 2015 to Jul 2024. With assessment by three independent reviewers, original English peer-reviewed full-text articles evaluating faricimab versus monospecific anti-VEGF agent(s) in FDA-indicated retinal disease with data on at least one set of efficacy and/or safety outcomes for each treatment arm and a minimum 3-month follow-up period were included. Data were appraised using the Cochrane RoB2 and ROBINS-I tools, PRISMA, and GRADE guidelines. All outcomes were collected at last follow-up. Random effects meta-analyses with 95% confidence intervals (CI) were conducted to calculate weighted mean differences (WMD) and risk ratios (RR). Change in best-corrected visual acuity (BCVA, ETDRS letters), change in central subfield thickness (CSFT, μm), and presence of retinal fluid were primary endpoints; ocular adverse events were secondary endpoints.
Results: Across 13 studies, in the context of neovascular age-related macular degeneration (nAMD), diabetic macular edema (DME), and retinal vein occlusion (RVO), 2226 eyes received anti-VEGF monotherapy and 3022 received faricimab. Final and change in BCVA were similar between treatment groups. Faricimab was associated with a significantly higher reduction in CSFT in DME and RVO eyes but not in nAMD eyes. The incidence of ocular adverse events were similar between groups.
Conclusion: There was no difference in BCVA between faricimab and anti-VEGF monotherapy in nAMD, DME, and RVO. While faricimab offered superior improvement in central subfield thickness at final follow-up for DME and RVO eyes, this effect was not seen in nAMD eyes. Future studies are needed to establish the long-term safety and efficacy of faricimab for retinal vascular disease.
DOI: 10.6084/m9.figshare.5121535.v1
title: Supplementary Material for: Evolution of Atherosclerotic Carotid Plaque Morphology: Do Ulcerated Plaques Heal? A Serial Multidetector CT Angiography Study

description: <i>Background:</i> Atherosclerotic carotid plaque rupture may lead to thromboembolization, causing transient ischemic attack or ischemic stroke. Carotid plaque ulceration on angiography is associated with plaque rupture. Although healing of ruptured plaques has been described in coronary arteries, little is known about the natural development of plaque ulcerations in carotid arteries. We therefore explored the evolution of carotid plaque surface morphology with serial multidetector CT angiography (MDCTA). <i>Methods:</i> From a registry of patients with transient ischemic attack or minor ischemic stroke, we selected 83 patients who had undergone serial MDCTA of the carotid arteries. Arteries subjected to revascularization procedures between the two scans were excluded (n = 11). Plaque surface morphology was classified as smooth, irregular or ulcerated on both baseline and follow-up MDCTA. Progression (i.e. development of irregularities or ulceration) and regression (i.e. disappearance of irregularities or ulceration) in morphology were evaluated. <i>Results:</i> The mean time interval between the MDCTA scans was 21 ± 13 months. At baseline, 28 (18%) arteries were normal, 124 (80%) contained atherosclerotic plaque and 3 (2%) were occluded. Plaque surface morphology was smooth in 86 arteries (55%), irregular in 23 (15%) and ulcerated in 15 (10%). At follow-up, surface morphology was unchanged in 88% of arteries, had progressed in 8% and regressed in 4%. Most importantly, plaque morphology remained unchanged in most ulcerated plaques (10/15; 67%). One ulcerated plaque had progressed, whereas 4 had regressed. New ulcerations had developed in 2 nonulcerated plaques. <i>Conclusion:</i> MDCTA allows evaluation of temporal changes in atherosclerotic carotid plaque morphology. Plaque surface morphology remained unchanged in most arteries. Carotid ulcerations persist for a long time, and may remain a potential source of thromboembolism.
DOI: 10.6084/m9.figshare.6049043.v1
title: STRESS AND AUTONOMIC RESPONSE TO SLEEP DEPRIVATION IN MEDICAL RESIDENTS v2

description: El objetivo de este estudio fue evaluar el estrés producido por las guardias de 24 h en médicos residentes usando un enfoque multidimensional. Participaron dos grupos de médicos residentes que fueron seleccionados según el turno de trabajo: un grupo con privación de sueño (<i>n </i>= 42) que participó en una guardia activa de 24 h y otro grupo de contraste (<i>n </i>= 18) que participó en una jornada laboral normal sin privación de sueño. Todos completaron pre-post test durante un ciclo de 24 h realizadas las dos veces a las 8 h a.m. Las medidas incluyeron HRV, cortisol, rendimiento cognitivo y estado de ánimo transitorio. Los resultados mostraron que el efecto de la interacción grupo x fase fue significativa para todas las variables analizadas, indicando que los médicos en turno de guardia mostraban un deterioro significativo en todos los indicadores fisiológicos, de rendimiento y estado de ánimo en comparación con los participantes del grupo sin guardia. Estos resultados sugieren que es necesario revisar los sistemas de guardias médicas para reducir la carga de estrés que incide directamente en las condiciones de trabajo.
DOI: 10.17632/2n7jt8mvgb
title: Incomplete lineage sorting and phenotypic evolution in marsupials

description: Data accompanying the manuscript "Incomplete lineage sorting and phenotypic evolution in marsupials" in Cell. In this paper, we performed comparative phylogenomic analyses in the marsupial lineage, a classic example of a successful mammalian radiation, to map and date signatures of ILS and to unravel some of the phenotypic consequences.

The dataset includes 
- Whole genome alignment of six marsupials generated by LASTZ+MULTIZ

- Monito del monte draft assembly (.fasta.gz) and gene annotation (.gff)

- table including 13,320 orthologs to be present in the gray short-tailed opossum, monito del monte, at least one Diprotodontia species, and at least one Dasyuromorphia species

- re-annotation of gene Wfikkn1 in Macropus eugenii: The published coding sequence of this gene in the tammar wallaby contains shifts and several very short exons. We ran Exonerate to re-annotate this gene using the pep sequence of this gene in the gray short-tailed opossum as the reference. Files, including gff, cds sequence and pep sequence, are provided.

- re-annotation of gene Wfikkn1 in Antechinus stuartii: ran Exonerate to re-annotate gene Wfikkn1 in Antechinus stuartii using the pep sequence of this gene in the gray short-tailed opossum as the reference. Files, including gff, cds sequence and pep sequence, are provided.

- re-annotation of gene PAPSS2 in Macropus eugenii: Due the assembly and annotation issue, the quality of the published coding sequence of this gene in wallaby is poor (e.g. containing a continuous 41bp Ns, an incomplete beginning, and a potential ~30bp annotation error). We manually corrected the sequence by mapping the published RNA-seq data and population re-sequencing data to its close species Macropus rufus genome. Files, including cds sequence and pep sequence, are provided.

- species name map list

- md5 for all files

- Morphological image
DOI: 10.6084/m9.figshare.19571695.v1
title: Coupled five-bus power system and four-node natural-gas system

description: Data of the Example in my paper "Power-Gas Coordination: Making Flexible Ramping Products Feasible".
DOI: 10.6084/m9.figshare.22249924.v1
title: mmsd mouse brain neg msi.zip

description: MMSD-MSI raw data of a mouse brain tissue section in the negative ion mode. The raw data are subsection compressed.
DOI: 10.17632/5fd929tfnt
title: Data Visualization of the Social Media Content of Colombiamoda in Relation to the City Image Reconstruction of Medellín

description: This file is a table with processed data that presents a complex network analysis of social media content related to a mega event (Colombiamoda) and city branding (the city image of Medellín). The data was collected via a web scrapping from January to December 2017 in the platforms of Facebook, LinkedIn, Twitter, and Instagram, and using the hashtags of #Colombiamoda2017, #Colombiamoda, and #Medellín. The definitions of the columns in the table are: - Label: The name of the node that is identified in the network. - Clustering (Holland & Leinhardt, 1971): In graph theory, a clustering is a measure of the degree to which nodes in a graph tend to cluster together. Evidence suggests that in most real-world networks, and in particular social networks, nodes tend to create tightly knit groups characterized by a relatively high density of ties; this likelihood tends to be greater than the average probability of a tie randomly established between two nodes. - Degree (Reinhard, 2005): In graph theory, the degree (or valency) of a vertex of a graph is the number of edges that are incident to the vertex, and in a multigraph, loops are counted twice. - Pageranks (Brin & Page, 1998): An iterative algorithm that measures the importance of each node within the network. - Eccentricity (Alexandra & Wellman, 2011): the distance from a given starting node to the farthest node from it in the network. - Closeness centrality (Sabidussi, 1966): In a connected graph, closeness centrality (or closeness) of a node is a measure of centrality in a network, calculated as the reciprocal of the sum of the length of the shortest paths between the node and all other nodes in the graph. Thus, the more central a node is, the closer it is to all other nodes. - Harmonic closeness centrality (Marchiori & Latora, 2000): In a (not necessarily connected) graph, the harmonic centrality reverses the sum and reciprocal operations in the definition of closeness centrality. - Betweeness centrality (Freeman, 1977): In graph theory, betweenness centrality is a measure of centrality in a graph based on shortest paths. For every pair of vertices in a connected graph, there exists at least one shortest path between the vertices such that either the number of edges that the path passes through (for unweighted graphs) or the sum of the weights of the edges (for weighted graphs) is minimized. The betweenness centrality for each vertex is the number of these shortest paths that pass through the vertex.
DOI: 10.6084/m9.figshare.1512427.v2
title: brain tumor dataset

description: This brain tumor dataset contains 3064 T1-weighted contrast-inhanced images with three kinds of brain tumor. Detailed information of the dataset can be found in readme file.
DOI: 10.6084/m9.figshare.26118109.v1
title: <b>Summary statistics for </b><b>Nature Genetics manuscript "</b><b>Heterogeneous genetic architectures of prostate cancer susceptibility in Sub-Saharan Africa"</b>

description: Men of African descent have the highest prostate cancer incidence and mortality rates, yet the genetic basis of prostate cancer in African men has been understudied. We used genomic data from 3,963 cases and 3,509 controls from Ghana, Nigeria, Senegal, South Africa, and Uganda, to infer ancestry-specific genetic architectures and fine-map disease associations. Fifteen independent associations at 8q24.21, 6q22.1, and 11q13.3 reached genome-wide significance, including four novel associations. Intriguingly, multiple lead associations are private alleles, a pattern arising from recent mutations and the out-of-Africa bottleneck. These African-specific alleles contribute to haplotypes with odds ratios above 2.4. We found that the genetic architecture of prostate cancer differs across Africa, with effect size differences contributing more to this heterogeneity than allele frequency differences. Population genetic analyses reveal that African prostate cancer associations are largely governed by neutral evolution. Collectively, our findings emphasize the utility of conducting genetic studies that use diverse populations.
DOI: 10.6084/m9.figshare.6570566.v1
title: Predicted glomerular responses

description: Predicted glomerular responses using the proposed neural network model. Values in each cell represents the standardized glomerular activity (z-score). Each cell is assigned to the 2D grid with the value "1" shown in the modPos file in the order from upper-left to lower-right.
DOI: 10.17632/dzsdvm4yjc
title: Moment Tensor Potential for hydrogen diffusion in bcc metals

description: A moment tensor potentials (MTPs) for hydrogen diffusion in bcc metals. MTP training sets are also included, which were calculated by active learning and DFT calculations.

For the information of MTP, read Ref. [1] ~ [3].

Ref. [1] https://dx.doi.org/10.2139/ssrn.4254267
Ref. [2] A. V. Shapeev, Multiscale Modeling and Simululation, 14, 1153 (2016).
Ref. [3] I. S. Novikov, K. Gubaev, E. V. Podryabinkin, A. V. Shapeev, Machine Learning: Science and Technology, 2 025002 (2020).
DOI: 10.6084/m9.figshare.11919300.v1
title: Data Base: Maternal-perinatal complicantions and adolescent pregnancy

description: Data that have information about the complications asociated with adolescent pregnancy in a peruvian hospital.
DOI: 10.6084/m9.figshare.13521488.v2
title: MedSeg Covid Dataset 1

description: This is a dataset of 100 axial CT images from &gt;40 patients with COVID-19 that were converted from openly accessible JPG images found at https://www.sirm.org/en/ . The conversion process is described in detail in the following blogpost: Covid-19 radiology — data collection and preparation for Artificial Intelligence<br>In short, the images were segmented by a radiologist using 3 labels: <em>ground-glass</em> (mask value =1), <em>consolidation</em> (=2) and <em>pleural effusion</em> (=3). We then trained a 2d multilabel U-Net model, which you can find and apply in MedSeg
DOI: 10.6084/m9.figshare.14251130.v4
title: Does different activation between the medial and the lateral gastrocnemius during walking translate into different fascicle behavior ?

description: The file contains all the results analyzed in the study and all raw and normalized data for the EMG recording and for the ultrasound recording.These files are accompanied by a "user guide" document which explains how the data and files are organized. All methodological considerations are described in the manuscript linked to the data.
DOI: 10.6084/m9.figshare.15101514.v1
title: Nonlinear Phase Shifts data set I

description: Data set I (Data extraction, Data_MODIS, Results)
DOI: 10.6084/m9.figshare.21936849.v3
title: EASE23ReplicationPack.zip

description: Replication package for EASE23.
DOI: 10.6084/m9.figshare.21941558.v5
title: README_US_bee_completeness_paper.md

description: README.md file for all data files listed under this project