cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1144465.v1
title: Ecological data in museums survey results

description: Please refer to the "read_me.txt" file for metadata. We surveyed scientists working in fields related to ecology, animal behavior, taxonomy, and systematics to investigate how much ecological data taxonomists think should be recorded in the time of a specimen collection and with which frequency ecologists and animal behaviorists use information from museums. We invited 381 researchers representing a range of institutions (e.g., universities, museums, and research facilities), primarily from the United States and Uruguay, to complete a survey. Professors, curators, and post-doctoral associates comprised the majority of participants (62%), followed by graduate students (32%), and undergraduate students (5%). The table "S3_survey_questions.pdf" have the questions used in the on-line survey. The dataset "S3_survey_results.csv" have the results of the survey.
DOI: 10.6084/m9.figshare.1144452
title: A socialização do conhecimento científico pelos repositórios institucionais no ensino da Biblioteconomia

description: This dissertation discusses the use of institutional repositories as a tool for socialization of scientific knowledge in the academic environment by Library Science teachers from the Federal University of Bahia, Brazil. It also discusses how the socialization and the production of scientific knowledge relates to the practice of teaching and research in higher education. The socialization of knowledge is thought within the macro process of scientific communication, its new dynamics and trends. The Science Information is the area devoted to the study of processes creation, socialization and appropriation of knowledge. The research presented in this paper analyzes how that the teachers in the area of Information Science understand and use the repositories. The results point to a common understanding that this instrument is effective for the dissemination of scientific knowledge and to the keeping of the intellectual memory of the institution. It was detected a low utilization of the instrument by the teachers, despite the fact that they frequently recommend the students to use it. The work also raises the sources of information that can be used for research and how they are treated and perceived by the teachers.
DOI: 10.6084/m9.figshare.1144467.v1
title: Spike responses to simulated synaptic inputs

description: tba
DOI: 10.6084/m9.figshare.1144467.v2
title: Neural responses to simulated synaptic inputs

description: tba
DOI: 10.6084/m9.figshare.1144467.v3
title: Neural responses to simulated synaptic inputs

description: <br>Data from... Identifying and tracking simulated synaptic inputs from neuronal firing: insights from in vitro experiments.<br>M Volgushev, V Ilin, and IH Stevenson will be available here on publication.
DOI: 10.6084/m9.figshare.1144467.v4
title: Neuronal responses to simulated synaptic inputs

description: Data from... Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations<br>V Ilin, IH Stevenson, and M Volgushev. (2014) PLoS ONE. (in press) and Identifying and tracking simulated synaptic inputs from neuronal firing: insights from in vitro experiments<br>M Volgushev, V Ilin, and IH Stevenson (under review). will be available here upon publication.
DOI: 10.6084/m9.figshare.1144467.v5
title: Neuronal responses to simulated synaptic inputs

description: Data from... Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations<br>V Ilin, IH Stevenson, and M Volgushev. (2014) PLoS ONE. (in press) and Identifying and tracking simulated synaptic inputs from neuronal firing: insights from in vitro experiments<br>M Volgushev, V Ilin, and IH Stevenson (under review).
DOI: 10.6084/m9.figshare.1144392
title: Finite element model of Josephoartigasia monesi

description: Finite element model of Josephoartigasia monesi suitable for use with VOX-FE software.
DOI: 10.6084/m9.figshare.1144398
title: <i>Heleobia maltzani</i> (Westerlund, 1886) (Caenogastropoda: Truncatelloidea: Cochliopidae) from Crete and species-level diversity of <i>Heleobia</i> Stimpson, 1865 in Europe

description: Morphological characters and partial cytochrome oxidase (COI) DNA sequences were used to investigate intra- and interpopulation differences among three Cretan brackish-water populations of <i>Heleobia maltzani</i> snails. The morphology of male and female reproductive organs of <i>H. maltzani</i> did not differ within studied populations or in comparison with closely related species. In contrast, analysis of shell morphology revealed substantial variation not supported by the genetic data. Genetics results showed surprisingly low differentiation between all Cretan populations and also mainland populations of <i>Heleobia</i>. They also showed that <i>H. maltzani</i> is conspecific with four other European species of <i>Heleobia</i>, thus implying that there is only one species of brackish-water <i>Heleobia</i> in Europe. Such a low level of genotypic differentiation is unusual for typical island species and is most probably the consequence of recent colonization of Crete. Possible scenarios of such processes are discussed.
DOI: 10.6084/m9.figshare.1144391
title: Josephoartigasia monesi cranium with elongated teeth

description: Reconstructed cranium of Josephoartigasia monesi with artificially elongated teeth. Reconstruction made in Avizo 8.0 from CT scan of holotype specimen MNHN 921.
DOI: 10.6084/m9.figshare.1144392.v1
title: Finite element model of Josephoartigasia monesi

description: Finite element model of Josephoartigasia monesi suitable for use with VOX-FE software.
DOI: 10.6084/m9.figshare.1144467.v6
title: Neuronal responses to simulated synaptic inputs

description: Data from... Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations<br>V Ilin, IH Stevenson, and M Volgushev. (2014) PLoS ONE. (in press) and Identifying and tracking simulated synaptic inputs from neuronal firing: insights from in vitro experiments<br>M Volgushev, V Ilin, and IH Stevenson (under review).
DOI: 10.6084/m9.figshare.1144390
title: Josephoartigasia monesi cranial reconstruction

description: 3D reconstruction of the cranium of Josephoartigasia monesi, made using Avizo 8.0 from holotype specimen MNHN 921. Damaged parts of cranial morphology, in particular the left zygomatic arch, were reconstructed by copying and reflecting the relevant structure from the opposite side of the skull. Missing molar teeth (right P4 and M1, and left M2) were reconstructed in the same way. The missing right incisor root was reconstructed by filling in the empty alveolus. The erupted portions of both incisors were reconstructed by eye with reference to the plastic reconstruction made for a previous study of this specimen .
DOI: 10.6084/m9.figshare.1144391.v1
title: Josephoartigasia monesi cranium with elongated teeth

description: Reconstructed cranium of Josephoartigasia monesi with artificially elongated teeth. Reconstruction made in Avizo 8.0 from CT scan of holotype specimen MNHN 921.
DOI: 10.6084/m9.figshare.1144398.v2
title: <i>Heleobia maltzani</i> (Westerlund, 1886) (Caenogastropoda: Truncatelloidea: Cochliopidae) from Crete and species-level diversity of <i>Heleobia</i> Stimpson, 1865 in Europe

description: Morphological characters and partial cytochrome oxidase (COI) DNA sequences were used to investigate intra- and interpopulation differences among three Cretan brackish-water populations of <i>Heleobia maltzani</i> snails. The morphology of male and female reproductive organs of <i>H. maltzani</i> did not differ within studied populations or in comparison with closely related species. In contrast, analysis of shell morphology revealed substantial variation not supported by the genetic data. Genetics results showed surprisingly low differentiation between all Cretan populations and also mainland populations of <i>Heleobia</i>. They also showed that <i>H. maltzani</i> is conspecific with four other European species of <i>Heleobia</i>, thus implying that there is only one species of brackish-water <i>Heleobia</i> in Europe. Such a low level of genotypic differentiation is unusual for typical island species and is most probably the consequence of recent colonization of Crete. Possible scenarios of such processes are discussed.
DOI: 10.6084/m9.figshare.1144467.v8
title: Neuronal responses to simulated synaptic inputs

description: Data from... Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations. V Ilin, IH Stevenson, and M Volgushev. (2014) PLoS ONE 9(10): e109928. doi:10.1371/journal.pone.0109928 and Identifying and Tracking Simulated Synaptic Inputs from Neuronal Firing: Insights from In Vitro Experiments. M Volgushev, V Ilin, and IH Stevenson. (2015) PLoS Computational Biology 11(3): e1004167. doi:10.1371/journal.pcbi.1004167
DOI: 10.6084/m9.figshare.1144390.v1
title: Josephoartigasia monesi cranial reconstruction

description: 3D reconstruction of the cranium of Josephoartigasia monesi, made using Avizo 8.0 from holotype specimen MNHN 921. Damaged parts of cranial morphology, in particular the left zygomatic arch, were reconstructed by copying and reflecting the relevant structure from the opposite side of the skull. Missing molar teeth (right P4 and M1, and left M2) were reconstructed in the same way. The missing right incisor root was reconstructed by filling in the empty alveolus. The erupted portions of both incisors were reconstructed by eye with reference to the plastic reconstruction made for a previous study of this specimen .
DOI: 10.6084/m9.figshare.1144398.v1
title: <i>Heleobia maltzani</i> (Westerlund, 1886) (Caenogastropoda: Truncatelloidea: Cochliopidae) from Crete and species-level diversity of <i>Heleobia</i> Stimpson, 1865 in Europe

description: Morphological characters and partial cytochrome oxidase (COI) DNA sequences were used to investigate intra- and interpopulation differences among three Cretan brackish-water populations of <i>Heleobia maltzani</i> snails. The morphology of male and female reproductive organs of <i>H. maltzani</i> did not differ within studied populations or in comparison with closely related species. In contrast, analysis of shell morphology revealed substantial variation not supported by the genetic data. Genetics results showed surprisingly low differentiation between all Cretan populations and also mainland populations of <i>Heleobia</i>. They also showed that <i>H. maltzani</i> is conspecific with four other European species of <i>Heleobia</i>, thus implying that there is only one species of brackish-water <i>Heleobia</i> in Europe. Such a low level of genotypic differentiation is unusual for typical island species and is most probably the consequence of recent colonization of Crete. Possible scenarios of such processes are discussed.
DOI: 10.6084/m9.figshare.22607870.v1
title: Additional file 2 of Hepatocellular carcinoma detection via targeted enzymatic methyl sequencing of plasma cell-free DNA

description: Additional file 2: Table S1. C sites prone to incomplete conversion in EM-seq. Table S2. Quality control metrics for Targeted EM-seq using HCC cell line input from 5 to 20 ng. Table S3. Quality control metrics for Targeted EM-seq from 596 clinical samples. Table S4. Comparison of methylation levels detected from two hybridization batches. Table S5. Summary of patient characteristics. Table S6. Summary of 283 CpG markers. Table S7. Methylation levels of 283 CpGs from clinical samples.
DOI: 10.6084/m9.figshare.12654980
title: Additional file 12 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 12. Multiple sequence alignments of the ABCG2 and ABCG2-like genes with full-length amino acid sequences.
DOI: 10.6084/m9.figshare.22607914
title: Additional file 4 of Morbid obesity impacts mortality among inpatients with type a aortic dissection: an analysis of the national inpatient sample

description: Additional file 4. Table S4: Association between clinical factors and obesity/morbid obesity among T(A)AD inpatients.
DOI: 10.6084/m9.figshare.21559447.v1
title: Additional file 1 of The prognostic value of IPI in patients with primary breast lymphoma, a multicenter retrospective study

description: Additional file 1: Table S1.Clinical data of each patients.
DOI: 10.5281/zenodo.10622688
title: Source data for MultiduBE

description: Raw gel images and unedited micrographs for MultiduBE.
DOI: 10.5281/zenodo.10623538
title: Source data for MultiduBE

description: Raw gel images and unedited micrographs for MultiduBE.
DOI: 10.5281/zenodo.10631289
title: Source data for MultiduBE

description: Raw gel images and unedited micrographs for MultiduBE.
DOI: 10.6084/m9.figshare.12130680.v1
title: Supplementary material from Extraction of alumina from alumina rich coal gangue by a hydro-chemical process

description: Vast quantities of gangue from coal mining and processing have accumulated over the years and caused significant economic and environmental problems in China. For high-added value utilization of alumina rich coal gangue (ARCG), a mild hydro-chemical process was investigated to extract alumina. The influences of NaOH concentration, mass ratio of alkali to gangue, reaction temperature and reaction time were systematically studied. An alumina extraction rate of 94.68% was achieved at the condition of NaOH concentration 47.5%, alkali to gangue ratio of 6, reaction temperature of 260°C and reaction time of 120 min. The obtained leaching residues were characterized through X-ray diffraction, scanning electron microscopy and energy-dispersive spectrometer. Research confirmed that kaolinite the main alumina-bearing phase of ARCG can be decomposed and transformed to Na<sub>8</sub>Al<sub>6</sub>Si<sub>6</sub>O<sub>24</sub>(OH)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub> and Ca<sub>2</sub>Al<sub>2</sub>SiO<sub>6</sub>(OH)<sub>2</sub> at relatively low temperature and short reaction time. Additionally, Na<sub>8</sub>Al<sub>6</sub>Si<sub>6</sub>O<sub>24</sub>(OH)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub> and Ca<sub>2</sub>Al<sub>2</sub>SiO<sub>6</sub>(OH)<sub>2</sub> are unstable and will transform to alumina-free phase NaCaHSiO<sub>4</sub> under the optimal conditions, which is the major reason for high alumina extraction rates.
DOI: 10.6084/m9.figshare.22608089.v1
title: Additional file 4 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 4.
DOI: 10.6084/m9.figshare.22608047
title: Additional file 1 of Single-cell RNA sequencing revealed the liver heterogeneity between egg-laying duck and ceased-laying duck

description: Additional file 1. The enriched pathways of gene from cluster 0. The enriched pathways of gene from cluster 15. The enriched pathways of gene from cluster 3. The enriched pathways of gene from cluster 12.
DOI: 10.6084/m9.figshare.12654977.v1
title: Additional file 11 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 11. Chromosomal location of ABCG2 gene subfamily members in some fishes.
DOI: 10.5519/qd.opx587i1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8811 records)
DOI: 10.6084/m9.figshare.22608092
title: Additional file 5 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 5.
DOI: 10.6084/m9.figshare.22608190
title: Additional file 4 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 4: Supplementary file 4: Table 4. Associations between metabolites, modules, outcomes and lifestyle factors.
DOI: 10.6084/m9.figshare.22608086
title: Additional file 3 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 3.
DOI: 10.15131/shef.data.24220696.v2
title: Plasmid maps for manuscript '<b>Molecular symmetry breaking in the Frizzled-dependent planar polarity pathway</b>'

description: Plasmid maps for associated publication as plain text GenBank Flat File Format containing DNA sequence information that can be viewed using a text editor (e.g. TextEdit) or common sequence analysis software (e.g. ApE, Geneious, SnapGene, Vector NTI).For details of GenBank Flat File Format see https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html<br>
DOI: 10.6084/m9.figshare.22608193
title: Additional file 5 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 5: Supplementary file 5: Table 5. Associations between metabolites and modules and whole-brain volume following adjustment for smoking and alcohol intake.
DOI: 10.6084/m9.figshare.22608092.v1
title: Additional file 5 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 5.
DOI: 10.5281/zenodo.10161238
title: Iron Dysregulation and Inflammatory Stress Erythropoiesis Associates with Long-Term Outcome of COVID-19

description: Dataset accompanying the manuscript "Iron Dysregulation and Inflammatory Stress Erythropoiesis Associates with Long-Term Outcomes of COVID-19" published in Nature Immunology (2024). Please see the README.txt file for details of included variables. Please address any questions or requests to Aimee Hanson at ah2157@cam.ac.uk or Ken Smith at kgcs2@cam.ac.uk.
DOI: 10.5281/zenodo.10161239
title: Iron Dysregulation and Inflammatory Stress Erythropoiesis Associates with Long-Term Outcome of COVID-19

description: Dataset accompanying the manuscript "Iron Dysregulation and Inflammatory Stress Erythropoiesis Associates with Long-Term Outcomes of COVID-19" published in Nature Immunology (2024). Please see the README.txt file for details of included variables. Please address any questions or requests to Aimee Hanson at ah2157@cam.ac.uk or Ken Smith at kgcs2@cam.ac.uk.
DOI: 10.6084/m9.figshare.14227820
title: Additional file 3 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 3. Summary of PRRSV-JXA1-upregulated-mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, JXA1 and JXA1/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.22608181.v1
title: Additional file 1 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 1: Supplementary file 1: Table 1. Full hub metabolite results (models 1-3).
DOI: 10.6084/m9.figshare.21559447
title: Additional file 1 of The prognostic value of IPI in patients with primary breast lymphoma, a multicenter retrospective study

description: Additional file 1: Table S1.Clinical data of each patients.
DOI: 10.5281/zenodo.10631571
title: Data and code for manuscript: 'Floral thermal biology in relation to pollen thermal performance in an early spring flowering plant' by T.N. Sherer, J.M. Heiling, and M.H. Koski

description: Data and code for manuscript: 'Floral thermal biology in relation to pollen thermal performance in an early spring flowering plant' by T.N. Sherer, J.M. Heiling, and M.H. Koski. 

Data include temperature data from thermocouple probes placed inside of flowers of Hexastylis arifolia and temperature probes outside of flowers and floral morphological from natural populations in the field, temperature data inside and outside of flowers of potted plants kept in a laboratory, and pollen germinability data from Hexastylis arifolia pollen germinated in vitro under various temperature treatments. 

Below are data file titles and a brief description of the data within each file. Each file has a 'metadata' tab describing the column headers.

final_field_temperature_data_all.xls: one-minute temperature data from inside and outside of flowers collected in the field. 

temp.by.time.bin.xlsx: a dataset used to analyze whether internal floral temperature differed from external floral temperature across a 24hr time period in the field. 

final_t2_trait_analysis.xlsx: the dataset used to asssess how morphological variation impacted floral thermoregulatory capacity in the field. 

thermogenesis_all_aligned.xlsx: temperature data evaluated to test for signatures of floral thermogenesis.

hex_tpc_2023_final.xls: pollen viabiliy from pollen samples that experienced one of seven temperature regimes. 

 

Two R code files are uploaded and described below:

 

field-data_analyses.R: code associated with analyzing thermoregulatory capacity of flowers in the field and assocaiting it with floral trait variation.

Final_TPC_Code.R: code associated with generating thermal performance curves for pollen using 4 different distributions.
DOI: 10.5281/zenodo.10631572
title: Data and code for manuscript: 'Floral thermal biology in relation to pollen thermal performance in an early spring flowering plant' by T.N. Sherer, J.M. Heiling, and M.H. Koski

description: Data and code for manuscript: 'Floral thermal biology in relation to pollen thermal performance in an early spring flowering plant' by T.N. Sherer, J.M. Heiling, and M.H. Koski. 

Data include temperature data from thermocouple probes placed inside of flowers of Hexastylis arifolia and temperature probes outside of flowers and floral morphological from natural populations in the field, temperature data inside and outside of flowers of potted plants kept in a laboratory, and pollen germinability data from Hexastylis arifolia pollen germinated in vitro under various temperature treatments. 

Below are data file titles and a brief description of the data within each file. Each file has a 'metadata' tab describing the column headers.

final_field_temperature_data_all.xls: one-minute temperature data from inside and outside of flowers collected in the field. 

temp.by.time.bin.xlsx: a dataset used to analyze whether internal floral temperature differed from external floral temperature across a 24hr time period in the field. 

final_t2_trait_analysis.xlsx: the dataset used to asssess how morphological variation impacted floral thermoregulatory capacity in the field. 

thermogenesis_all_aligned.xlsx: temperature data evaluated to test for signatures of floral thermogenesis.

hex_tpc_2023_final.xls: pollen viabiliy from pollen samples that experienced one of seven temperature regimes. 

 

Two R code files are uploaded and described below:

 

field-data_analyses.R: code associated with analyzing thermoregulatory capacity of flowers in the field and assocaiting it with floral trait variation.

Final_TPC_Code.R: code associated with generating thermal performance curves for pollen using 4 different distributions.
DOI: 10.6084/m9.figshare.22608187.v1
title: Additional file 3 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 3: Supplementary file 3: Table 3. PRS results.
DOI: 10.6084/m9.figshare.22608148
title: Additional file 2 of Investigating the molecular mechanisms of delirium-like neuropsychiatric disorder induced by electromagnetic pulse based on bioinformatics analysis

description: Additional file 2. Differentially expressed mRNAs between the EMP and the sham group.
DOI: 10.6084/m9.figshare.22608187
title: Additional file 3 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 3: Supplementary file 3: Table 3. PRS results.