cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10981712
title: Spatial multiomic landscape of the human placenta at molecular resolution

description: Successful pregnancy and healthy human embryo development rely directly on the placenta’s complex, dynamic gene regulatory networks, both within placental subtypes and at the maternal-fetal interface (MFI), that underlie stemness, proliferation, differentiation, invasion, immune tolerance, and communication. These cellular and molecular mechanisms are notoriously challenging to elucidate and make this organ arguably the least understood in the human body. Additionally, disruption of this vast collection of intercellular and intracellular programs and pathways leads to pregnancy complications and developmental defects. Here, we generated a comprehensive spatially resolved multi-modal cell census elucidating the molecular architecture of the first trimester human placenta. We utilized paired single-cell ATAC and RNA sequencing, spatial single-cell ATAC and RNA sequencing (Slide-tags), and in situ sequencing and hybridization mapping of transcriptomes at molecular resolution (STARmap-ISS and STARmap-ISH) using 922,961 cells to construct a spatial single-cell atlas outlining joint epigenomic and transcriptomic regulatory dynamics. Paired analyses unraveled intricate tumor-like gene expression and transcription factor motif programs sustaining the placenta in a hostile uterine environment; further investigation of gene-linked cis-regulatory elements revealed heightened regulatory complexity governing trophoblast differentiation and placental disease risk. Complementary spatial mapping techniques decoded these programs within the placental villous core and extravillous trophoblast (EVT) cell column architecture while simultaneously revealing niche-establishing transcriptional elements and cell-cell communication. To unify our datasets, we computationally imputed 33,357-gene multiomic single-cell profiles and spatially characterized the placental chromatin accessibility landscape. This spatially resolved single-cell multiomic framework of the first trimester human placenta at molecular resolution serves as a blueprint for future studies investigating cellular and molecular programs regulating early placental development and pregnancy.
DOI: 10.5281/zenodo.10981713
title: Spatial multiomic landscape of the human placenta at molecular resolution

description: Successful pregnancy and healthy human embryo development rely directly on the placenta’s complex, dynamic gene regulatory networks, both within placental subtypes and at the maternal-fetal interface (MFI), that underlie stemness, proliferation, differentiation, invasion, immune tolerance, and communication. These cellular and molecular mechanisms are notoriously challenging to elucidate and make this organ arguably the least understood in the human body. Additionally, disruption of this vast collection of intercellular and intracellular programs and pathways leads to pregnancy complications and developmental defects. Here, we generated a comprehensive spatially resolved multi-modal cell census elucidating the molecular architecture of the first trimester human placenta. We utilized paired single-cell ATAC and RNA sequencing, spatial single-cell ATAC and RNA sequencing (Slide-tags), and in situ sequencing and hybridization mapping of transcriptomes at molecular resolution (STARmap-ISS and STARmap-ISH) using 922,961 cells to construct a spatial single-cell atlas outlining joint epigenomic and transcriptomic regulatory dynamics. Paired analyses unraveled intricate tumor-like gene expression and transcription factor motif programs sustaining the placenta in a hostile uterine environment; further investigation of gene-linked cis-regulatory elements revealed heightened regulatory complexity governing trophoblast differentiation and placental disease risk. Complementary spatial mapping techniques decoded these programs within the placental villous core and extravillous trophoblast (EVT) cell column architecture while simultaneously revealing niche-establishing transcriptional elements and cell-cell communication. To unify our datasets, we computationally imputed 33,357-gene multiomic single-cell profiles and spatially characterized the placental chromatin accessibility landscape. This spatially resolved single-cell multiomic framework of the first trimester human placenta at molecular resolution serves as a blueprint for future studies investigating cellular and molecular programs regulating early placental development and pregnancy.
DOI: 10.15468/dl.8zjza8
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesonychoteuthis hamiltoni G.C.Robson, 1925"
 ]
}

 The dataset includes 132 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010834-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qy4hyx
title: Occurrence Download

description: A dataset containing 2787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Ursus americanus Pallas, 1780",
 "Year 2005-2014"
 ]
}

 The dataset includes 2787 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010835-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zus4s
title: Occurrence Download

description: A dataset containing 522707 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ilex aquifolium L.)"
 ]
}

 The dataset includes 522707 records from 2147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010829-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf8wm3
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "TaxonKey is Agelaea pentagyna (Lam.) Baill."
 ]
}

 The dataset includes 616 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044664-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72vmhm
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Country is Netherlands",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Acrocephalus melanopogon (Temminck, 1823), Acrocephalus paludicola (Vieillot, 1817))",
 "Year 2000-2023"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038161-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwg6rn
title: Occurrence Download

description: A dataset containing 2152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Espeletia angustifolia Cuatrec., Espeletia betancurii (Rodr.-Cabeza, S.Díz & Gal.-Tar.) Mavárez, Espeletia caldasii Cuatrec., Espeletia colombiana Cuatrec., Espeletia corymbosa Bonpl., Espeletia funckii Sch.Bip., Espeletia garciae Cuatrec., Espeletia guacharaca S.Díaz, Espeletia insignis Cuatrec., Espeletia jimenez-quesadae Cuatrec., Espeletia muiska Cuatrec., Espeletia pannosa Standl., Espeletia petiolata Cuatrec., Espeletia pleiochasia Cuatrec., Espeletia purpurascens Cuatrec., Espeletia sanchezii (S.Díaz & Obando) Mavárez, Espeletia santanderensis A.C.Sm., Espeletia sclerophylla Cuatrec., Espeletia trianae Cuatrec.)"
 ]
}

 The dataset includes 2152 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004312-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5k79g
title: Occurrence Download

description: A dataset containing 894 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidosperma quebracho-blanco Schltdl."
 ]
}

 The dataset includes 894 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052866-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54ncge
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Trachycarpus fortunei (Hook.) H.Wendl."
 ]
}

 The dataset includes 500 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205750-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8npye
title: Occurrence Download

description: A dataset containing 2572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Country is Netherlands",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris alpina (Linnaeus, 1758)",
 "Year 2000-2023"
 ]
}

 The dataset includes 2572 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038205-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvzjq2
title: Occurrence Download

description: A dataset containing 1020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.78518 51.01776,0.10815 51.01776,0.11982 51.40434,-0.78587 51.41876,-0.78518 51.01776))",
 "Year 2018-2020",
 "TaxonKey is Argynnis paphia (Linnaeus, 1758)"
 ]
}

 The dataset includes 1020 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066370-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtnsc2
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Procambarus Ortmann, 1905"
 ]
}

 The dataset includes 805 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008303-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3gyua
title: Occurrence Download

description: A dataset containing 2144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus fuscus Linnaeus, 1758",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 2144 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038195-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtrzs9
title: Occurrence Download

description: A dataset containing 631879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0"
 ]
 },
 "TaxonKey is Aves"
 ]
}

 The dataset includes 631879 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408231-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6f3283
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Riama Gray, 1858"
 ]
}

 The dataset includes 417 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075954-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmbbcb
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "TaxonKey is one of (Marchantia chenopoda L., Phaeoceros laevis (L.) Prosk., Phaeoceros oreganus (Austin) Hässel, Phaeoceros wrightii (Steph.) Hässel, Phaeoceros brevicapsulus (Steph.) Hässel, Phaeoceros carolinianus (Michx.) Prosk., Notothylas orbicularis (Schwein.) Sull., Notothylas breutelii (Gottsche) Gottsche, Nothoceros vincentianus (Lehm. & Lindenb.) J.C.Villarreal, Nothoceros schizophyllus (Steph.) J.C.Villarreal, Dendroceros crispatus (Hook.) Nees, Dendroceros breutelii Nees, Dendroceros crispus (Sw.) Nees)"
 ]
}

 The dataset includes 92 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003699-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gosvmg
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.54175 4.18579,-75.11353 4.18579,-75.11353 6.07544,-76.54175 6.07544,-76.54175 4.18579))",
 "HasCoordinate is true",
 "TaxonKey is Hyalinobatrachium fleischmanni (Boettger, 1893)"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031585-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc44pv
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylocomiastrum umbratum (Hedw.) M.Fleisch.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 143 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408239-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6659vh
title: Occurrence Download

description: A dataset containing 6943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Country is Netherlands",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Alauda arvensis Linnaeus, 1758, Lullula arborea (Linnaeus, 1758))",
 "Year 2000-2023"
 ]
}

 The dataset includes 6943 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038163-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.748fhw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Aulacorhynchus cyanolaemus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062771-230530130749713/datasets/export for details.
DOI: 10.15468/dl.nk9kne
title: Occurrence Download

description: A dataset containing 10382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves, Mammalia, Amphibia, Tracheophyta, Reptilia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((22.775 40.5333333,23.05 40.5333333,23.05 40.7416667,22.775 40.7416667,22.775 40.5333333))"
 ]
}

 The dataset includes 10382 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060390-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk9dha
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Huperzia appressa (La Pylaie ex Desv.) Á.Löve & D.Löve",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 342 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408227-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wym33
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Aulacorhynchus calorhynchus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062773-230530130749713/datasets/export for details.
DOI: 10.15468/dl.v4wbgx
title: Occurrence Download

description: A dataset containing 3871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylocomiadelphus triquetrus (Hedw.) Ochyra & Stebel",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 3871 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408236-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9zmnr
title: Occurrence Download

description: A dataset containing 415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Automolus melanopezus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 415 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062786-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35b44j
title: Occurrence Download

description: A dataset containing 9833 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypnum cupressiforme Hedw.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 9833 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0408254-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ofto8i
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia oligacantha Hort.Vindob."
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003684-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tggnn
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Automolus virgatus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062794-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jexv35
title: Occurrence Download

description: A dataset listing the 22 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribución potencial del género Ficus (Moraceae) en México"
 ]
}

 The dataset's 22 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016728-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcjqmm
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchotus maculicollis G.R.Gray, 1867"
 ]
}

 The dataset includes 473 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052846-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdh584
title: Occurrence Download

description: A dataset containing 12330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunella modularis (Linnaeus, 1758)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 12330 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038222-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8pv2b
title: Occurrence Download

description: A dataset containing 105045 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Avena fatua L."
 ]
}

 The dataset includes 105045 records from 1064 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016736-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8072968
title: UNET Lung Segmentation Weights for Chest X Rays