cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ufzrmm
title: Occurrence Download

description: A dataset containing 170781 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.continent = 'AFRICA'
 AND occurrence.countrycode = 'TZ'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 6 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 6 OR CAST(occurrence.kingdomkey AS INTEGER) = 6 OR CAST(occurrence.phylumkey AS INTEGER) = 6 OR CAST(occurrence.classkey AS INTEGER) = 6 OR CAST(occurrence.orderkey AS INTEGER) = 6 OR CAST(occurrence.familykey AS INTEGER) = 6 OR CAST(occurrence.genuskey AS INTEGER) = 6 OR CAST(occurrence.specieskey AS INTEGER) = 6)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 170781 records were derived from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033170-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/a4yr-9931
title: " QA_test_question_set_for_CEE "

description: "(1) The CEE-QA test question set comprises 1,040 questions from Registered Construction Engineer Examinations (RCEEs) and 1,881 self-designed questions covering 18 second-level knowledge sub-domains (KSD) by experts.(2) Each question from the CEE-QA test question set are manually annotated with four features, including the question source, single-answer question or multiple-answer question, and calculation question or non-calculation question.(3) This CEE-QA test question set is developed and maintained by Southeast University.(4) Make sure to read the specification and follow the rules."
DOI: 10.15468/dl.h7ryqm
title: Occurrence Download

description: A dataset containing 2256311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cetacea",
 "Year 1975-2025"
 ]
}

 The dataset includes 2256311 records from 1669 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033146-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/8wdd-ew11
title: beta-caryophllene+no+no2 + O3 - Aerosol study - physical properties - 2012-06-08

description: Publication of the dataset
DOI: 10.25326/t1hv-4h31
title: alpha-pinene+NOx + O3 - Aerosol study - physical properties - 2012-03-28

description: Publication of the dataset
DOI: 10.25326/3pjr-t128
title: alpha-pinene+NOx + O3 - Aerosol study - physical properties - 2012-02-15

description: Publication of the dataset
DOI: 10.25326/nx9n-6h39
title: N-methylacetanilide+octane+hono+ozone + OH - Gas-phase oxidation - kinetic study - 2011-02-11

description: Publication of the dataset
DOI: 10.25326/mqhp-m282
title: bacillus subtilis + None - Other

description: Publication of the dataset
DOI: 10.25326/v2d5-mp70
title: alpha-pinene+no+no2 + OH - Aerosol study - physical properties - 2012-04-27

description: Publication of the dataset
DOI: 10.25326/wmyr-jy88
title: alpha-pinene+no+no2 + OH - Aerosol study - physical properties - 2012-04-10

description: Publication of the dataset
DOI: 10.25326/ex92-xe03
title: CO+CH4 + None - Instruments intercomparison - 2015-10-07

description: Publication of the dataset
DOI: 10.25326/9jph-9j60
title: allyl acetate+no + OH - Gas-phase oxidation - product study - 1999-07-01

description: Publication of the dataset
DOI: 10.25326/j6e5-pg18
title: alpha-pinene+beta-caryophyllene+NOx + O3 - Aerosol study - physical properties - 2012-12-04

description: Publication of the dataset
DOI: 10.25326/tw9g-2d32
title: alpha-pinene+nox + OH - Aerosol study - physical properties - 2012-05-30

description: Publication of the dataset
DOI: 10.25326/n9zb-7m95
title: alpha-pinene+nox+sf6 + OH - Gas-phase oxidation - product study - 2002-04-16

description: Publication of the dataset
DOI: 10.25326/egm7-1z39
title: pinene+ozone+dust+water+ice + None - Aerosol study - physical properties - 2005-10-13

description: Publication of the dataset
DOI: 10.25326/7jcm-af02
title: CO + None - Instruments intercomparison - 2016-04-07

description: Publication of the dataset
DOI: 10.25326/cyax-bk82
title: alpha-pinene+hono+sf6+h2o + OH - Gas-phase oxidation - product study - 2002-04-18

description: Publication of the dataset
DOI: 10.15468/dl.mz92pc
title: Occurrence Download

description: A dataset containing 241008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-79.82384 -3.20915,-80.05779 -3.29233,-80.32858 -3.41271,-79.73561 -3.83223,-79.54553 -3.68503,-79.51574 -3.42877,-79.82384 -3.20915))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 241008 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5fmcn
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Korthalsia scortechinii"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010151-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fcyyd
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophrys spruneri"
 ]
}

 The dataset includes 152 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010154-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t55s6a
title: Occurrence Download

description: A dataset containing 106341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus",
 "HasCoordinate is true",
 "Country is Germany"
 ]
}

 The dataset includes 106341 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010092-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15846951
title: Transcription start sites experience a high influx of heritable variants fuelled by early development

description: Annotations and meta-cohorts for the main analyses of "Transcription start sites experience a high influx of heritable variants fuelled by early development".
DOI: 10.5281/zenodo.15846952
title: Transcription start sites experience a high influx of heritable variants fuelled by early development

description: Annotations and meta-cohorts for the main analyses of "Transcription start sites experience a high influx of heritable variants fuelled by early development".
DOI: 10.15468/dl.763uzv
title: Occurrence Download

description: A dataset containing 106308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus"
 ]
}

 The dataset includes 106308 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010098-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yb6ee
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Korthalsia rogersii"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010153-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtteh6
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "DatasetKey is one of (VIT Herbarium - Vascular Plants (The Natural History Museum of Alava), Col·lecció de plantes de l'herbari de la Universitat de Barcelona, DIBA-Parc Natural del Montseny, CSIC-Real Jardín Botánico-Colección de Plantas Vasculares (MA))",
 "Geometry POLYGON((-1.95048 43.45064,-6.54403 44.42541,-9.60918 44.02237,-9.24362 42.04944,-6.37531 41.94495,-5.98162 41.52526,-6.78954 40.98416,-6.78954 39.79927,-7.31612 39.52288,-6.93315 38.98539,-7.24431 38.46253,-6.93315 38.10556,-7.31612 37.69003,-7.5076 36.9668,-5.92786 35.9465,-3.55826 35.96588,0.14873 37.61927,0.81612 39.49949,3.16326 41.09374,3.60335 42.3799,2.30371 42.444,1.24016 42.74099,0.54335 42.71405,-1.34536 43.02315,-1.95048 43.45064))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio inaequidens"
 ]
}

 The dataset includes 229 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010155-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17726011
title: Future Time Orientation and Social Generativity among Emerging Adults from Serbia: The Mediating Role of Life Project

description: This study investigated the association between individuals’ psychological future and generativity during emerging adulthood (N = 1,570), proposing a model in which Future Time Orientation influences Social Generativity indirectly through engagement in Life Project. The results revealed that individuals’ orientation toward the future was associated with generative tendencies; however, this association was specific to the subdimension of future orientation reflecting the extent to which future considerations guide present decisions and behaviors, while the other one reflecting the extension of the future was found to be non-significant. Furthermore, this relationship was mediated by involvement in life project, defined as the translation of intentions into concrete, goal-directed actions. Overall, the findings suggest that conceiving of the future as a domain for purposeful action, rather than passive anticipation, appears pivotal in transforming abstract aspirations into concrete, value-consistent goals that further foster socially oriented generativity.
DOI: 10.5281/zenodo.17726010
title: Future Time Orientation and Social Generativity among Emerging Adults from Serbia: The Mediating Role of Life Project

description: This study investigated the association between individuals’ psychological future and generativity during emerging adulthood (N = 1,570), proposing a model in which Future Time Orientation influences Social Generativity indirectly through engagement in Life Project. The results revealed that individuals’ orientation toward the future was associated with generative tendencies; however, this association was specific to the subdimension of future orientation reflecting the extent to which future considerations guide present decisions and behaviors, while the other one reflecting the extension of the future was found to be non-significant. Furthermore, this relationship was mediated by involvement in life project, defined as the translation of intentions into concrete, goal-directed actions. Overall, the findings suggest that conceiving of the future as a domain for purposeful action, rather than passive anticipation, appears pivotal in transforming abstract aspirations into concrete, value-consistent goals that further foster socially oriented generativity.
DOI: 10.15468/dl.ec9t35
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocaulon jauense"
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010156-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pexutm
title: Occurrence Download

description: A dataset containing 3854293 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (Magdalena)"
 ]
}

 The dataset includes 3854293 records from 821 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010085-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.66t1g1k00
title: Diversity in CRISPR-based immunity protects susceptible genotypes by restricting phage spread and evolution

description: Diversity in host resistance often associates with reduced pathogen
 spread. This may result from ecological and evolutionary processes, likely
 with feedback between them. Theory and experiments on bacteria-phage
 interactions have shown that genetic diversity of the bacterial adaptive
 immune system can limit phage evolution to overcome resistance. Using the
 CRISPR-Cas bacterial immune system and lytic phage, we engineered a
 host-pathogen system where each bacterial host genotype could be infected
 by only one phage genotype. With this model system, we explored how CRISPR
 diversity impacts the spread of phage when they can overcome a resistance
 allele, how immune diversity affects the evolution of the phage to
 increase its host range, and if there was feedback between these
 processes. We show that increasing CRISPR diversity benefits susceptible
 bacteria via a dilution effect, which limits the spread of the phage. We
 suggest that this ecological effect impacts the evolution of novel phage
 genotypes, which then feeds back into phage population dynamics.
description: Anyone wishing to use this dataset is suggested to go to this
 paper's GitHub - github.com/JackCommon/Common_etal_2020
DOI: 10.5061/dryad.r4xgxd28v
title: Data from: Combinatorial signal processing in an insect

description: Human language is combinatorial: phonemes are grouped into syllables,
 syllables into words, and so on. The capacity for combinatorial processing
 is present to different degrees in some mammals and birds. We tested for
 basic combinatorial processing in an insect against two competing
 hypotheses: beginning rule (where the early signal portions play a
 stronger role in acceptability); and no rule (where the order of signal
 elements plays no role in signal acceptability). We worked with Enchenopa
 treehoppers, whose vibrational signals consist of a whine (W) followed by
 pulses (P). The combinatorial rule hypothesis predicts females will prefer
 any stimuli containing the natural-combination (WP or PWP) over
 reverse-order stimuli (PW). The beginning rule hypothesis predicts that
 females will prefer stimuli with natural beginnings (WP or W) over stimuli
 with modified beginnings (PW or PWP). The no rules hypothesis predicts no
 preferences in stimuli acceptability. In playback experiments using laser
 vibrometry, females preferred natural-combination signals regardless of
 the beginning element (WP or PWP) and discriminated against reverse-order
 signals (PW) or individual elements (W or P). Finding support for the
 combinatorial rule hypothesis in insects suggests that this capability
 represents a common solution to the problems presented by complex
 communication.
description: This data was collected during a playback experiment with female
 <em>Enchenopa binotata</em> treehoppers.  Synthetic playbacks
 of altered male advertisment signals were given using a piezo-electric
 controller and actuator (Thorlabs, Newton, NJ, USA) and recorded using
 a laser vibrometer (Polytec PLV-100; Polytec Inc., Auburn, MA, USA).
 Responses were tallied and analyzed.
DOI: 10.5061/dryad.qrfj6q5cf
title: Data from: Liquid chromatography-mass spectrometry (LC-MS) data of a multi-epitope peptibody with bFGF/VEGFA

description: The protein primary structure of the
 recombinant Peptibody were
 investigated systematically by Liquid
 Chromatography-Mass Spectrometry (LC-MS). The 15 amino
 acids of N-terminal
 were Met-Gln-Lys-Arg-Lys-Arg-Lys-Lys-Ser-Arg-Tyr-Lys-Ser-Gly-Gly and the C-terminal was Lys (K), the same as the theoretical sequence. With more proteases, the whole sequence was detected at the coverage of trypsin 87.5%, chymotrypsin 75.3% and Glu-C 76.7%. The peptide-mapping could be used as an valuable standard to certify the complete expression and primary structure of Peptibody. The pI and MW were 8.93 and 37.415 kDa, within the errors allowed . The binding specificity after production were analyzed using anti-VEGFA and anti-His antibodies.
description: Peptibody was treated with six proteolytic enzymes (trypsin, chymotrypsin, Asp-N, Glu-C, Lys-C and Lys-N) and digested into amenable peptide fragments for LC-MS analysis. The mass spectrometer used was Q Exactive (Thermo Scientific). For sequencing and peptide-mapping, the data were processed by BiopharmaLynx 1.3 sofware. For molecular weight (MW), the data were calculated through deconvolution by ProMass for XcaliburTM software.
DOI: 10.5061/dryad.wpzgmsbj2
title: Data from: A ketocarotenoid-based color polymorphism in the Sira poison frog Ranitomeya sirensis indicates novel gene interactions underlying aposematic signal variation

description: The accumulation of red ketocarotenoids is an important component of
 coloration in many organisms, but the underlying mechanisms are poorly
 understood. In some organisms, ketocarotenoids are sequestered from the
 diet and can accumulate when enzymes responsible for carotenoid breakdown
 are disrupted. In other organisms, ketocarotenoids are formed endogenously
 from dietary precursors via oxidation reactions carried out by carotenoid
 ketolase enzymes. Here, we study the genetic basis of carotenoid
 coloration in an amphibian. We demonstrate that a red/yellow polymorphism
 in the dendrobatid poison frog Ranitomeya sirensis is due to the
 presence/absence of ketocarotenoids. Using whole-transcriptome sequencing
 of skins and livers, we found that a transcript encoding a cytochrome P450
 enzyme (CYP3A80) is expressed 3.4-fold higher in livers of red frogs
 versus yellow. As CYP3A enzymes are known carotenoid ketolases in other
 organisms, our results point to CYP3A80 as a strong candidate for a
 carotenoid ketolase in amphibians. Furthermore, in red frogs, the
 transcript encoding the carotenoid cleavage enzyme BCO2 is expressed at a
 low level or as a splice variant lacking key catalytic amino acids. This
 suggests that BCO2 function may be disrupted in red frogs, providing a
 mechanism whereby the accumulation of ketocarotenoids and their dietary
 precursors may be enhanced.
description: See manuscript for details on data collection methods.
description: Supplementary tables.zip -- Supplementary tables S1-S7<br>
 deseq2_results_skin.csv -- Full DEseq2 results for skin tissue<br>
 deseq2_results_liver.csv -- Full DEseq2 results for liver tissue<br>
 CYP_full_alignment.fasta -- Protein alignment underlying Figure
 S7<br> cyp3A_alignment.fasta -- Protein alignment underlying Figure
 4<br> liver_annotation.gtf -- Annotation track for liver
 transcriptome assembly<br> liver_assembly.fasta -- Liver
 transcriptome assembly<br> reflectance.csv -- Spectral reflectance
 data underlying Figure 1A<br> sirensis_CYP_amino_acid.fasta -- CYPs
 found in Ranitomeya sirensis, aa sequence<br>
 sirensis_CYP_mRNA.fasta -- CYPs found in Ranitomeya sirensis, mRNA
 sequence<br> sirensis_carotenoid_concentrations.csv - Carotenoid
 concentration data underlying Figures 1C, S2, and S3<br>
 skin_annotation.gtf -- Annotation track for skin transcriptome
 assembly<br> skin_assembly.fasta -- Skin transcriptome
 assembly
DOI: 10.5061/dryad.jh9w0vt80
title: Data from: Distribution of genetic variation underlying adult migration timing in steelhead of the Columbia River basin

description: Fish migrations are energetically costly, especially when moving between
 fresh and saltwater, but are a viable strategy for Pacific salmon and
 trout (Oncorhynchus spp.) due to the advantageous resources available at
 various life stages. Anadromous steelhead (O. mykiss) migrate vast
 distances and exhibit variation for migration phenotypes that have a
 genetic basis at candidate genes known as greb1L and rock1. We examined
 the distribution of genetic variation at 13 candidate markers spanning
 greb1L, intergenic, and rock1 regions versus 246 neutral markers for 113
 populations (n = 9,471) of steelhead from inland and coastal lineages in
 the Columbia River. Patterns of population structure with neutral markers
 reflected genetic similarity by geographic region as demonstrated in
 previous studies, but candidate markers clustered populations by
 predominate genetic variation associated with migration timing. Mature
 alleles for late migration had the highest frequency overall in steelhead
 populations throughout the Columbia River, with only 9 of 113 populations
 that had a higher frequency of premature alleles for early migration.
 While a single haplotype block was evident for the coastal lineage, we
 identified multiple haplotype blocks for the inland lineage. The inland
 lineage had one haplotype block that corresponded to candidate markers
 within the greb1L gene and immediately upstream in the intergenic region,
 and the second block only contained candidate markers from the intergenic
 region. Haplotype frequencies had similar patterns of geographic
 distribution as single markers, but there were distinct differences in
 frequency between the two haplotype blocks for the inland lineage.
 Redundancy analyses were used to model environmental effects on allelic
 frequencies of candidate markers and significant variables were migration
 distance, temperature, isothermality, and annual precipitation. This study
 improves our understanding of the spatial distribution of genetic
 variation underlying migration timing in steelhead as well as associated
 environmental factors and has direct conservation and management
 implications.