cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/xnm2bc
title: top106edges_15EX05noNA_metaAnalysis_edgeList.tab

description: :unav
DOI: 10.5519/qd.cc54c028
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1910 records)
DOI: 10.5519/qd.b66m5tzs
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21587 records)
DOI: 10.5281/zenodo.3509956
title: Aerosol information from WHU site

description: Aerosol optical and radiative information
DOI: 10.5281/zenodo.3509955
title: Aerosol information from WHU site

description: Aerosol optical and radiative information
DOI: 10.11583/dtu.22739738
title: WIRE01_miniature_wind_turbine_power_measurement

description: This dataset was created at the boundary layer wind tunnel of the WiRE Lab at EPFL for the WIRE01 miniature wind turbine presented in the work of Bastankhah and Porté-Agel [https://doi.org/10.3390/en10070923]. The data were collected at a constant wind tunnel fan speed of 6.5 Hz which corresponds to a 2.4 m/s free stream velocity. A range of the tip speed rato of the miniature wind turbine was tested, leading to different power outputs of the turbine. <br> The data include 2 types of files: <br> a) INFO.txt: This type of file contains an overview of the measurements for each tip speed ratio. In particular it has 8 different columns including: (1) the file name of each of the measurements, (2) the ambient pressure P0 (Pa), (3) the ambient temperature T0(K), (4) the free stream velocity U_ref(m/s), (5) the diameter of the wind turbine D(m) (6) the torque constant of the motor used TQ Cons(mNm/A), (7) the sampling frequency Fs(Hz), (8) the number of samples Ns, (9) the yaw angle of the wind turbine, (10) the mean rotational speed of the wind turbine (RPM) and (11) the measured mean power (mW) corresponding to each measurement. <br> b) power_###.txt: This file contains the instantaneous values of each tip speed ratio. In particular each file has 4 columns (1) the free stream velocity (m/s), (2) the rotational speed of the wind turbine (RPM), (3) the current (mA), (4) the power (mW).
DOI: 10.11583/dtu.22739738.v1
title: WIRE01_miniature_wind_turbine_power_measurement

description: This dataset was created at the boundary layer wind tunnel of the WiRE Lab at EPFL for the WIRE01 miniature wind turbine presented in the work of Bastankhah and Porté-Agel [https://doi.org/10.3390/en10070923]. The data were collected at a constant wind tunnel fan speed of 6.5 Hz which corresponds to a 2.4 m/s free stream velocity. A range of the tip speed rato of the miniature wind turbine was tested, leading to different power outputs of the turbine. <br> The data include 2 types of files: <br> a) INFO.txt: This type of file contains an overview of the measurements for each tip speed ratio. In particular it has 8 different columns including: (1) the file name of each of the measurements, (2) the ambient pressure P0 (Pa), (3) the ambient temperature T0(K), (4) the free stream velocity U_ref(m/s), (5) the diameter of the wind turbine D(m) (6) the torque constant of the motor used TQ Cons(mNm/A), (7) the sampling frequency Fs(Hz), (8) the number of samples Ns, (9) the yaw angle of the wind turbine, (10) the mean rotational speed of the wind turbine (RPM) and (11) the measured mean power (mW) corresponding to each measurement. <br> b) power_###.txt: This file contains the instantaneous values of each tip speed ratio. In particular each file has 4 columns (1) the free stream velocity (m/s), (2) the rotational speed of the wind turbine (RPM), (3) the current (mA), (4) the power (mW).
DOI: 10.5519/qd.m7bze7et
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7325 records)
DOI: 10.5519/qd.ukowvgjg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1904 records)
DOI: 10.5519/qd.cdjld477
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3041 records)
DOI: 10.5519/qd.uq7xcfty
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2451 records)
DOI: 10.5281/zenodo.7876646
title: Data for "Bootstrapping outperforms community-weighted approaches for estimating the shapes of phenotypic distributions"

description: This repository contains datasets used in the manuscript entitled "Bootstrapping outperforms community-weighted approaches for estimating the shapes of phenotypic distributions" by Maitner et al. For details of these datasets, see https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution. All datasets contain individual (and in some cases, organ-level) trait measurements. The dataset "all_traits_unscaled_RMBL.rds" was compiled by Christine Lamanna, Lindsey L Sloat, Andrew J. Kerkhoff, and Brian J. Enquist, Full details in https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution The dataset "Julies_panama_data.xlsx" was compiled by Julie Messier and collaborators, full details here: https://doi.org/10.1111/j.1461-0248.2010.01476.x The dataset "TreefrogTadpoles.xlsx" was compiled by Nick Rasmussen, full details here: https://www.jstor.org/stable/44082203 The dataset "zooplankton_2019.zip" was compiled by Ewa Merz and Francesco Pomati. For more details, see www.aquascope.ch , https://github.com/mbaityje/plankifier, https://github.com/tooploox/SPCConvert, and https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution .
DOI: 10.5281/zenodo.7876647
title: Data for "Bootstrapping outperforms community-weighted approaches for estimating the shapes of phenotypic distributions"

description: This repository contains datasets used in the manuscript entitled "Bootstrapping outperforms community-weighted approaches for estimating the shapes of phenotypic distributions" by Maitner et al. For details of these datasets, see https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution. All datasets contain individual (and in some cases, organ-level) trait measurements. The dataset "all_traits_unscaled_RMBL.rds" was compiled by Christine Lamanna, Lindsey L Sloat, Andrew J. Kerkhoff, and Brian J. Enquist, Full details in https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution The dataset "Julies_panama_data.xlsx" was compiled by Julie Messier and collaborators, full details here: https://doi.org/10.1111/j.1461-0248.2010.01476.x The dataset "TreefrogTadpoles.xlsx" was compiled by Nick Rasmussen, full details here: https://www.jstor.org/stable/44082203 The dataset "zooplankton_2019.zip" was compiled by Ewa Merz and Francesco Pomati. For more details, see www.aquascope.ch , https://github.com/mbaityje/plankifier, https://github.com/tooploox/SPCConvert, and https://www.authorea.com/users/244803/articles/523535-on-estimating-the-shape-and-dynamics-of-phenotypic-distributions-in-ecology-and-evolution .
DOI: 10.5519/qd.xq9m7fdl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (9254 records)
DOI: 10.6084/m9.figshare.21610597
title: Transcriptome analysis and identification of genes associated with individual fertilisation rate differences in hen infundibulum

description: 1. Fertilisation rate is closely related to the reproductive performance and economic status of chicken laying breeders. In this study, two flocks (<i>n</i> = 1,029 in population I and <i>n</i> = 358 in population II) in the later laying period were used for investigating the individual differences among population fertilisation rates (FRs). 2. The funnel and distal parts of the infundibulum were collected from nine individuals (five with low FR and four with high FR from population II) and RNA-sequencing (RNA-seq) method was used to investigate the transcriptome differences in fertilisation. Differences in fertilisation regulation were investigated by comparing the different parts (funnel and distal) of the infundibulum between the low FR and high FR groups. 3. There were notable individual FR differences in both categories. Some individuals had a relative high FR (≥90%) for a long time (&gt;5 days after AI), contrarily, some individuals lost the ability to fertilise eggs in a very short time. 4. Differentially expressed genes (DEGs), such as <i>DUSP7</i>, <i>PPP1R3B</i>, <i>FYB, OVA</i>, <i>OVALX and OVALY</i> may be associated with sperm functional regulation, fertilisation and early-stage fertilised ovum development processes. DEGs such as <i>AVBD1, AVBD2, AVBD6, NFATC2</i> and <i>BANK1</i> indicated a severe immune response to sperm survival and fertilisation in the oviduct. 5. The results suggested that individual differences should be considered in the breeding and reproduction process. The DEGs identified in this study may promote our understanding of different fertilisation regulation in laying breeders.
DOI: 10.6084/m9.figshare.21631861
title: Comparative transcriptomic analysis reveals candidate genes for seasonal breeding in the male Lion-Head goose

description: 1. Due to seasonal breeding, geese breeds from Southern China have low egg yield. The genetic makeup underlying performance of local breeds is largely unknown, and few studies have investigated this problem. This study integrated 21 newly generated and 50 publicly existing RNA-seq libraries, representing the hypothalamus, pituitary and testis, to identify candidate genes and importantly related pathways associated with seasonal breeding in male Lion-Head geese. 2. In total, 19, 119 and 302 differentially expressed genes (DEGs) were detected in the hypothalamus, pituitary and testis, respectively, of male Lion-Head geese between non-breeding and breeding periods. These genes were significantly involved in the neuropeptide signalling pathway, gland development, neuroactive ligand-receptor interaction, JAK-STAT signalling pathway, cAMP signalling pathway, PI3K-Akt signalling pathway and Foxo signalling pathway. 3. By integrating another 50 RNA-seq samples 4, 18 and 40 promising DEGs were confirmed in hypothalamus, pituitary and testis, respectively. 4. <i>HOX</i> genes were identified as having important roles in the development of testis between non-breeding and breeding periods of male Lion-Head geese.
DOI: 10.6084/m9.figshare.21631861.v2
title: Comparative transcriptomic analysis reveals candidate genes for seasonal breeding in the male Lion-Head goose

description: 1. Due to seasonal breeding, geese breeds from Southern China have low egg yield. The genetic makeup underlying performance of local breeds is largely unknown, and few studies have investigated this problem. This study integrated 21 newly generated and 50 publicly existing RNA-seq libraries, representing the hypothalamus, pituitary and testis, to identify candidate genes and importantly related pathways associated with seasonal breeding in male Lion-Head geese. 2. In total, 19, 119 and 302 differentially expressed genes (DEGs) were detected in the hypothalamus, pituitary and testis, respectively, of male Lion-Head geese between non-breeding and breeding periods. These genes were significantly involved in the neuropeptide signalling pathway, gland development, neuroactive ligand-receptor interaction, JAK-STAT signalling pathway, cAMP signalling pathway, PI3K-Akt signalling pathway and Foxo signalling pathway. 3. By integrating another 50 RNA-seq samples 4, 18 and 40 promising DEGs were confirmed in hypothalamus, pituitary and testis, respectively. 4. <i>HOX</i> genes were identified as having important roles in the development of testis between non-breeding and breeding periods of male Lion-Head geese.
DOI: 10.6084/m9.figshare.21610597.v2
title: Transcriptome analysis and identification of genes associated with individual fertilisation rate differences in hen infundibulum

description: 1. Fertilisation rate is closely related to the reproductive performance and economic status of chicken laying breeders. In this study, two flocks (<i>n</i> = 1,029 in population I and <i>n</i> = 358 in population II) in the later laying period were used for investigating the individual differences among population fertilisation rates (FRs). 2. The funnel and distal parts of the infundibulum were collected from nine individuals (five with low FR and four with high FR from population II) and RNA-sequencing (RNA-seq) method was used to investigate the transcriptome differences in fertilisation. Differences in fertilisation regulation were investigated by comparing the different parts (funnel and distal) of the infundibulum between the low FR and high FR groups. 3. There were notable individual FR differences in both categories. Some individuals had a relative high FR (≥90%) for a long time (&gt;5 days after AI), contrarily, some individuals lost the ability to fertilise eggs in a very short time. 4. Differentially expressed genes (DEGs), such as <i>DUSP7</i>, <i>PPP1R3B</i>, <i>FYB, OVA</i>, <i>OVALX and OVALY</i> may be associated with sperm functional regulation, fertilisation and early-stage fertilised ovum development processes. DEGs such as <i>AVBD1, AVBD2, AVBD6, NFATC2</i> and <i>BANK1</i> indicated a severe immune response to sperm survival and fertilisation in the oviduct. 5. The results suggested that individual differences should be considered in the breeding and reproduction process. The DEGs identified in this study may promote our understanding of different fertilisation regulation in laying breeders.
DOI: 10.6084/m9.figshare.22225939.v2
title: Effects of overfeeding on liver lipid metabolism in mule ducks based on transcriptomics and metabolomics

description: 1. In this study, transcriptomics and metabolomics were used to analyse changes in gene expression and metabolites in the liver of 70-d-old mule ducks after 10 and 20 d of continuous overfeeding. 2. In the free-feeding group, 995 differentially expressed genes and 51 metabolites (VIP &gt;1, P &lt; 0.05) were detected in the early stage, and 3,448 differentially expressed genes and 55 metabolites (VIP &gt;1, P &lt; 0.05) were detected in the later stage. There were 775 differentially expressed genes and 47 metabolites (VIP &gt;1, P &lt; 0.05) detected in the early stage of the overfeeding group, and 6,719 differentially expressed genes and 57 metabolites (VIP &gt;1, P &lt; 0.05) detected in the later stage. 3. There were no significant differences between the early stage in the overfeeding and free-feeding groups at the transcriptional and metabolic levels. Oleic acid and palmitic acid synthesis increased in the early stage of the overfeeding and free-feeding groups, however, these were inhibited in the late stage. Fatty acid oxidation and β-oxidation pathways were inhibited and insulin resistance was enhanced significantly in the late overfeeding stage. 4. In the early stage, the digestion and absorption of fat in the overfeeding and free-feeding groups were enhanced. In the later stage, the ability to store triglyceride in the overfeeding group was greater than in the free-feeding group. 5. The expression of nuclear factor κB (NFκB), a key inflammatory factor, was inhibited in the late stage of overfeeding, while arachidonic acid (AA), a metabolite with anti-inflammatory properties, increased in the late stage of overfeeding to inhibit the inflammatory effects caused by excessive lipid accumulation. These results add to the understanding of the mechanism of production of fatty liver in mule ducks and facilitate the development of treatments for non-alcoholic fatty liver disease.
DOI: 10.6084/m9.figshare.22225939
title: Effects of overfeeding on liver lipid metabolism in mule ducks based on transcriptomics and metabolomics

description: 1. In this study, transcriptomics and metabolomics were used to analyse changes in gene expression and metabolites in the liver of 70-d-old mule ducks after 10 and 20 d of continuous overfeeding. 2. In the free-feeding group, 995 differentially expressed genes and 51 metabolites (VIP &gt;1, P &lt; 0.05) were detected in the early stage, and 3,448 differentially expressed genes and 55 metabolites (VIP &gt;1, P &lt; 0.05) were detected in the later stage. There were 775 differentially expressed genes and 47 metabolites (VIP &gt;1, P &lt; 0.05) detected in the early stage of the overfeeding group, and 6,719 differentially expressed genes and 57 metabolites (VIP &gt;1, P &lt; 0.05) detected in the later stage. 3. There were no significant differences between the early stage in the overfeeding and free-feeding groups at the transcriptional and metabolic levels. Oleic acid and palmitic acid synthesis increased in the early stage of the overfeeding and free-feeding groups, however, these were inhibited in the late stage. Fatty acid oxidation and β-oxidation pathways were inhibited and insulin resistance was enhanced significantly in the late overfeeding stage. 4. In the early stage, the digestion and absorption of fat in the overfeeding and free-feeding groups were enhanced. In the later stage, the ability to store triglyceride in the overfeeding group was greater than in the free-feeding group. 5. The expression of nuclear factor κB (NFκB), a key inflammatory factor, was inhibited in the late stage of overfeeding, while arachidonic acid (AA), a metabolite with anti-inflammatory properties, increased in the late stage of overfeeding to inhibit the inflammatory effects caused by excessive lipid accumulation. These results add to the understanding of the mechanism of production of fatty liver in mule ducks and facilitate the development of treatments for non-alcoholic fatty liver disease.
DOI: 10.6084/m9.figshare.22105862
title: Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and possible leakage of methane

description: Multiple sulfur isotopes of iron sulfides from the South Yellow Sea sediments in the paper "Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and leakage of coastal methane".
DOI: 10.6084/m9.figshare.22105862.v1
title: Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and leakage of coastal methane

description: Multiple sulfur isotopes of iron sulfides from the South Yellow Sea sediments in the paper "Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and leakage of coastal methane".
DOI: 10.6084/m9.figshare.22105862.v2
title: Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and possible leakage of methane

description: Multiple sulfur isotopes of iron sulfides from the South Yellow Sea sediments in the paper "Multiple sulfur isotopes of iron sulfides from thick greigite-bearing sediments indicate incomplete anaerobic oxidation and leakage of coastal methane".
DOI: 10.5519/qd.pd79p67w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1904 records)
DOI: 10.6084/m9.figshare.22795206
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 2 - Operating parameters
DOI: 10.6084/m9.figshare.22795206.v1
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 2 - Operating parameters
DOI: 10.6084/m9.figshare.22795236
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 4 - NIST 610 vs. multiple IS models
DOI: 10.6084/m9.figshare.22795236.v1
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 4 - NIST 610 vs. multiple IS models
DOI: 10.6084/m9.figshare.22795287
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 3 - Model vs. accepted mass fractions
DOI: 10.6084/m9.figshare.22795287.v1
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 3 - Model vs. accepted mass fractions
DOI: 10.6084/m9.figshare.22795323
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 5 - Fitting parameters
DOI: 10.6084/m9.figshare.22795323.v1
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 5 - Fitting parameters
DOI: 10.6084/m9.figshare.22795332
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 1 - RMs used
DOI: 10.6084/m9.figshare.22795332.v1
title: Combined Use of multiple external and internal standards in LA-ICP-MS analysis of bulk geological samples using lithium borate fused glass

description: Table 1 - RMs used
DOI: 10.5519/qd.x5i3khom
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21587 records)
DOI: 10.35078/wvlc6s
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Caratinga | Município: Teixeiras

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.17636/10186598
title: Biochemical estimation of muscle mass and unbiased assessment of kidney function using serum creatinine and cystatin-C: A prognostic validation study within UK Biobank
DOI: 10.15139/s3/fxgxyy
title: Negative staining EM images of P. aeruginosa strains with mutated flagellin

description: Negative staining electron microcopy images of Pseudomonas aeruginosa strains with mutated flagellin used for the filament length calculation. This data set is a part of the study on the role of the flagellin outer domain in P. aeruginosa performed by Nedeljkovic and coworkers, and supporting information for the manuscript in revision.