cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48370/ofd/3pk7we
title: Stictoleptura cordigera (Füsslins, 1775), C-676

description: Coleoptera collection
DOI: 10.15129/fafa972b-0ef9-434c-911a-895796574a12
title: Data for: "Targeting 17β-Estradiol Biosynthesis in Neural Stem Cells Improves Stroke Outcome"

description: This dataset contains raw data, in Prism, Excel and jpg format which was created for the purposes of addressing the hypothesis of whether targeting 17β-estradiol biosynthesis in neural stem cells improves stroke outcome. Data restricted until publication of related paper. Further details on access available using the contact email on this page.
DOI: 10.5281/zenodo.6445362
title: Molecular Dynamics simulations of shear droplets

description: This dataset contains the results of non-equilibrium Molecular Dynamic simulations of 2-dimensional SPC/E water nanodroplets confined between silica-like walls and under shear flow conditions, performed using Gromacs. The main purposes of these simulations are: a) to study the motion of three-phases contact lines over high-friction surfaces, b) to study the critical transition leading to droplet breakage and c) to test the modelling and prediction capabilities of continuous fluid dynamics simulation methods. The investigation of the points above is illustrated in an article, which has been digitally published on the Journal of Fluid Mechanics (doi:10.1017/jfm.2022.219, see references); please refer to the paper for a detailed description of the molecular simulations and of the tested CFD methods. The publication of this dataset not only grants the reproducibility of the results discussed in the article, but also serves as collection of benchmarks for the fellow researchers willing to test improved and/or alternative models to describe the motion of contact lines.
description: {"references": ["L\u0101cis, U., Pellegrino, M., Sundin, J., Amberg, G., Zaleski, S., Hess, B., & Bagheri, S. (2022). Nanoscale sheared droplet: Volume-of-fluid, phase-field and no-slip molecular dynamics. Journal of Fluid Mechanics, 940, A10. doi:10.1017/jfm.2022.219"]}
DOI: 10.5281/zenodo.6445354
title: REACH_ DataProviderSamples_DB

description: Catalogue with excerpts of datasets supplied by Data Providers
DOI: 10.5281/zenodo.6445353
title: REACH_ DataProviderSamples_DB

description: Catalogue with excerpts of datasets supplied by Data Providers
DOI: 10.5281/zenodo.6445485
title: Molecular Dynamics simulations of spreading droplets

description: This dataset contains the results of non-equilibrium Molecular Dynamic simulations of 2-dimensional SPC/E water nanodroplets spontaneously spreading over silica-like walls, performed using Gromacs. The main purpose of these simulations is to study the motion of three-phases contact lines over high-friction surfaces and to test contact line friction models. Further details can be found in 'documentation.pdf'.
description: {"references": ["L\u0101cis, U., Pellegrino, M., Sundin, J., Amberg, G., Zaleski, S., Hess, B., & Bagheri, S. (2022). Nanoscale sheared droplet: Volume-of-fluid, phase-field and no-slip molecular dynamics. Journal of Fluid Mechanics, 940, A10. doi:10.1017/jfm.2022.219"]}
DOI: 10.5281/zenodo.6275633
title: Molecular Dynamics simulations of spreading droplets

description: This dataset contains the results of non-equilibrium Molecular Dynamic simulations of 2-dimensional SPC/E water nanodroplets spontaneously spreading over silica-like walls, performed using Gromacs. The main purpose of these simulations is to study the motion of three-phases contact lines over high-friction surfaces and to test contact line friction models. Further details can be found in 'documentation.pdf'.
description: {"references": ["L\u0101cis, U., Pellegrino, M., Sundin, J., Amberg, G., Zaleski, S., Hess, B., & Bagheri, S. (2022). Nanoscale sheared droplet: Volume-of-fluid, phase-field and no-slip molecular dynamics. Journal of Fluid Mechanics, 940, A10. doi:10.1017/jfm.2022.219"]}
DOI: 10.21251/1f1f5171-0766-4a95-b396-9b18cda7f996
title: ExBreasts data set

description: ExBreastS survey dataset for deposit
DOI: 10.17632/64sn7vp7sj.1
title: PTP1B_ED

description: PTP1B Evolutionary Coupling Analysis
DOI: 10.17632/jrsrfks568.1
title: Zircon U-Pb geochronology and trace element dataset from the Southern Rocky Mountain Volcanic Field, Colorado, USA

description: This contribution provides in-situ LA-ICP-MS U-Pb ages and trace element determinations of zircons from dacitic to rhyolitic lavas, ignimbrites and intrusions in the Southern Rocky Mountain Volcanic Field (SRMVF) in Colorado, USA. The data record a period of intense magmatic activity in the Oligocene-early Miocene (~37-22 Ma) which gave rise to some of the largest explosive ignimbrites in the geological record (e.g. the Fish Canyon Tuff). Age data are drift corrected, but not corrected for radiation dosage or Th disequilibrium, in order to allow users to apply their own algorithms. Xenocrysts (much older crystals up to 2 Ga from the Proterozoic basement) are included in this record.
DOI: 10.17632/5tfj857sb2.2
title: Maternal prenatal restraint stress effects on immune factors in mice

description: Maternal immune dysregulation, caused by gestational psychological stress, infection, and other perturbations, results in altered offspring neurodevelopment and psychiatric risk. Multiple immune factors (e.g., cytokines, chemokines) play critical roles in shaping offspring neurodevelopment after gestational stress, though how maternal stress impacts maternal, placental, and fetal cytokines more broadly remains unclear. This dataset contains detection and concentration data on IL-1β, IL-2, IL-4, IL-6, IL-10, IL-17A, IFNγ, and TNFα levels in maternal serum, fetal brain, and placenta after exposure to a widely-used mouse prenatal restraint stress manipulation.

This study assessed cytokine alterations in offspring tissues and maternal serum due to maternal restraint stress. Two cohorts of CD-1 mice were time-mated and given repetitive restraint stress on gestational days 12-14. Prenatal stress dams were restrained in a plexiglass tube under bright lights for 45-min sessions during the light cycle (three times at E12 and E13 and once approximately 30 min before collection on E14). Dams were euthanized and tissues collected on embryonic day 14. Combined across the two cohorts, tissues from a total of 8 non-stressed and 9 stressed litters were collected. The following samples were taken: maternal serum, one randomly selected placenta per litter, and microdissected dorsal forebrain. Two Bio-Plex Mouse Cytokine Group I 8-plex Assays were used to assess levels of IL-1β, IL-2, IL-4, IL-6, IL-10, IL-17A, IFNγ, and TNFα. All samples were run in duplicate on a Bio-Plex Luminex 200 (Bio-Rad) and analyzed via Bio-Plex Manager (Bio-Rad), per manufacturer recommendations. Tissue analyte levels were normalized to total protein levels (Pierce BCA Protein Assay, Thermo Fisher). All analytes were not detected in all tissues. All experimental procedures involving animals were performed in accordance with University of Iowa Institutional Animal Care and Use Committee (IACUC) policies and NIH guide for the care and use of laboratory animals.
DOI: 10.17632/tvv7c6m3cz.2
title: Reappraising the production and transfer of hydrogen atoms from the middle to the upper atmosphere of Mars at times of elevated water vapor

description: These data are the result of a box model that can compute the photochemical evolution of an air parcel submitted to changes in density, pressure, temperature, and atmospheric composition on Mars. It mimics the ascent of an air parcel at a speed of 10 cm/s that corresponds to the approximate speed at which upward transport is expected to occur during dusty events and around the southern summer solstice. 
The actual file content is described in the Readme.txt file accompanying the data files deposited. 
Each event simulated has its specific file, that is Martian Year (MY) 34 Global Dust Storm, Perihelion, as well as MY35 Perihelion and C-storm.
DOI: 10.17632/b94xgzxsdm.4
title: Cost-effective and power-efficient portable turbine-based emergency ventilator

description: Ventilators have always been common in medical scenarios but very expensive to procure or develop. One of the main reasons for these is the components that are being used are expensive and require precise instrumentation, research, and development. This paper attempts to mitigate that problem by proposing a novel way to rapidly develop a portable ventilator that uses common 3D printing technology and off-the-shelf components. This turbine and valve-based ventilator feature most of the modes that are commonly used by healthcare professionals. A unique servo-based pressure release mechanism has been designed that makes the system around 36 times more efficient than solenoid-based systems. Reliability and efficiency have been increased further through the use of a novel positive end-expiratory pressure (PEEP) valve that does not contain any electromechanical component. Effective algorithms such as feed-forward and proportional–integral–derivative (PID) controllers were used alongside the unique ‘Sensor data filtration methodology’. The system also provides an interactive graphical user interface (GUI) via an android application that can be installed on any readily found tabs while the firmware manages the breathing detection algorithm using a flow meter and pressure sensor. This modular and portable ventilator also features a replaceable battery and holds the ability to run on solar power. This energy-efficient and low noise system can run for 5 to 6 hours at a stretch without needing to be connected to the main’s supply.
DOI: 10.17632/gvpmbd47hv.1
title: disparity _dataset

description: The data in this study includes information on income disparities, investment, labor force, science and technology, and education in six provinces (Banten, DKI Jakarta, West Java, Central Java, DI Yogyakarta, and East Java) in Java Island, Indonesia.  Income disparity is calculated using the Williamson Index.  Data Extracted from the Statistics Indonesia database listed on the website: https://www.bps.go.id
DOI: 10.17632/j44vvn2933.1
title: Normative value of running speed for asymptomatic young Indian adults between 18 and 21 years: A cross-sectional study

description: Study Design: A cross-sectional observational study
Purpose: To determine the gender and age-specific running speed reference value among asymptomatic young Indian adults between 18-21 years
Methods: Participants will be recruited based on the inclusion and exclusion criteria. Demographic data will be collected and anthropometric measurements such as Body Mass Index (BMI), thigh length and true limb length will be taken. One leg Sit-to-Stand (STS) test will be used to measure the Lower Limb (LL) muscle strength. The normative data for running speed will be collected by using the 40-yard sprint test.
Significance: The achieved norms of this study can be used easily for approximating the performance of young adults in their daily life activities as well as for their health and fitness screening, profiling, monitoring and surveillance.
Keywords: Motor skills, Physical fitness, Young adults, Running
DOI: 10.17632/9yjg42jw7f.1
title: Relationship between core stability with dynamic balance and coordination among boxing players: A cross-sectional study

description: Core stability is crucial component to determine the performance of player in their game also it predicts the chances of injury during game. Boxing is a combat sport which requires great amount of dynamic balance and coordination. Punches determine the winner which requisite dynamic balance for attacking and dodging and coordination for landing a perfect punches. The main aim of study was to see the influence of stability of core and its attribtes on dynamic balance and coordination. A total of 38 samples were recruited from boxing academy with the age bracket of 18-25 years. The outcome measures was Double leg lowering test, Closed kinetic chain upper extremity test for core stability and Y-balance test, Alternate hand wall toss test for dynamic balance and coordination.
DOI: 10.17632/j2p2hfb3np.1
title: Online social capital in LinkedIn and Facebook

description: The data was collected from LinkedIn and Facebook users to study the formation of online bonding and online bridging social capitals. Further, data on moderating variables were also collected. The questionnaire was published on Google Survey.
DOI: 10.17632/sx72xyfvbv.1
title: Prospective Motion Correction and Automatic Segmentation of Penetrating Arteries in Phase Contrast MRI at 7 T 

description: MRI images and segmentation code for a study titled "Prospective Motion Correction and Automatic Segmentation of Penetrating Arteries in Phase Contrast MRI at 7 T".  A preprint of the study can be found at https://www.biorxiv.org/content/10.1101/2022.01.20.477093v1
DOI: 10.48370/ofd/0um1n3/qyeups
title: Stenoptera rufa.JPG

description: :unav
DOI: 10.48370/ofd/0um1n3
title: Stictoleptura rufa (Brullé, 1832), C-677

description: Coleoptera collection
DOI: 10.17632/5wmd4547sv.1
title: Sentinel lymph node biopsy in patients with clinical stage IIB/C cutaneous melanoma: A national cohort study

description: Supplemental tables and figures.
DOI: 10.17632/xwrpkcmvjb.1
title: iTRAQ Proteomic Analysis of Wheat (Triticum aestivum L.) Genotypes Differing in Waterlogging Tolerance 

description: Strong cation exchange (SCX) fractionation and LC-MS/MS analysis
The combined labeled samples were bound to a SCX fractionation column connected with a high performance liquid chromatography (HPLC) system. The peptide mixture was re-dissolved in the buffer A (20 mM ammonium formate in water, pH10.0), and then fractionated by high pH separation using Ultimate 3000 system (Thermo Fisher scientific, MA, USA) connected to a reverse phase column (Gemini-NX 3u C18 110A column, 2.0 mm x 150 mm, 3 μm, (Waters Corporation, MA, USA). High pH separation was performed using a linear gradient starting from 5% to 45% buffer B (20 mM ammonium formate in 80% ACN, pH 10.0) in 40 min. The column flow rate was maintained at 0.2 mL/min and column temperature was maintained at 30℃. A total of 12 fractions were collected, and each fraction was dried in a vacuum concentrator for the next step.
Peptide fractions were resuspended with 30 μL solvent C ( water with 0.1% formic acid), respectively, and separated by nanoLC and analyzed by electrospray tandem mass spectrometry. The experiments were performed on an Easy-nLC 1000 system (Thermo Fisher Scientific, MA, USA). A total of 10 μL peptide sample was loaded onto the trap column (Thermo Scientific Acclaim PepMap C18, 100 μm × 2 cm), with a flow of 10 μL/min for 3 min and subsequently separated on the analytical column (Acclaim PepMap C18, 75 μm × 15 cm) with a linear gradient, from 3% to 32% solvent D (ACN with 0.1% formic acid) in 120 min. The column flow rate was maintained at 300 nL/min.
The fusion mass spectrometer was run in the data-dependent mode to switch automatically between MS and MS/MS acquisition. Survey full-scan MS spectra (m/z 350-1550) were acquired with a mass resolution of 120 K, followed by sequential high energy collisional dissociation MS/MS scans with a resolution of 30 K. The isolation window was set as 1.6 Da. MS/MS fixed first mass was set at 110. In all cases, one microscan was recorded using dynamic exclusion of 45 seconds.
Database search and Quantification
The mass spectrometry data were transformed into MGF (Mascot generic format) files with Proteome Discovery 1.2 (Thermo, PA, USA) and analyzed using Mascot software version 2.3.2 (Matrix Science, London, UK). Mascot database was set up for protein identification using Triticum aestivum L database in NCBI nr (release 2017_03); SwissProt/UniprotKB (release 2018_06) and International Protein Index (IPI; version 3.16). Trypsin/P was chosen as the enzyme with two missed cleavages allowed; Peptide tolerance was set at 10 ppm, and Mascot was searched with a fragment ion mass tolerance of 0.050 Da; a parent ion tolerance of 10.0 PPM. Significance threshold p < 0.05 (with 95% confidence). The average values of the biological replicates were used to indicate the final protein abundances for each sample. Proteins with a 1.2-fold change between samples and a p value less than 0.05 were determined as differentially expressed proteins (DEPs).
DOI: 10.48370/ofd/aio4td/3iavmk
title: Stictoleptura tripartita.JPG

description: :unav
DOI: 10.48370/ofd/aio4td
title: Stictoleptura tripartita (Heyden, 1889), C-678

description: Coleoptera collection
DOI: 10.15151/esrf-es-704493244
title: Operando Characterisation of Sweet Corrosion Scale: Impact of Corrosion Inhibitors

description: CO2(aq)-induced corrosion of energy infrastructure, including geothermal plant, is of huge concern, as it significantly increases the probability of failure. On this basis, much effort is directed towards controlling this phenomenon, with a go-to option being the addition of organic species, corrosion inhibitors, that reduce corrosion through surface binding. This technology is well established, although surface-active selection remains largely a trial-and-error procedure, due to a lack of mechanistic insight. For example, concerning CO2(aq)-induced corrosion, detailed understanding of the interaction between solid corrosion scale (rust) and injected corrosion inhibitors is simply absent. This proposal will address this issue through coupling quantification of scale growth with grazing incidence X-ray diffraction to electrochemical measurement of corrosion kinetics. Operando data will be acquired as a function of immersion time, in the absence/presence of a corrosion inhibitor.
DOI: 10.48370/ofd/6xkg6n
title: Stictoleptura erythroptera (Hagenbach, 1822), C-679

description: Coleoptera collection
DOI: 10.5281/zenodo.6445459
title: Data for Yamagami et al. (2022)

description: Dataset and python scripts to reproduce main figures in the Yamagami et al (2022). - csv files (.csv) in "data_fig1": Time series and linear trends for figure 1. - netcdf files (.nc) in "data": Linear trends of atmospheric and oceanic variables for figure 2-4. - csv files (.csv) in "data_ht": Linear trends of ocean heat transports for figure 3. - netcdf files (.nc) and csv files (.csv) in "data_nagac": Annual mean potential temperature and ocean velocity for figure 5. - csv files (.csv) in "csv_trends": Linear trends for figure 6. - .py files are python scripts to make figures.
DOI: 10.17632/vbdyfx2wtb.1
title: PROPOSAL DOCUMENTS

description: THE ROLE OF SOCIAL WORK AND EMERGENCY MEDICAL SERVICES A SYSTEMATIC REVIEW
DOI: 10.17632/943k6hctd4.1
title: Virological characteristics of the SARS-CoV-2 Omicron BA.2 spike

description: Soon after the emergence and global spread of the SARS-CoV-2 Omicron lineage, BA.1, another Omicron lineage, BA.2, began outcompeting BA.1. The results of statistical analysis showed that the effective reproduction number of BA.2 is 1.4-fold higher than that of BA.1. Neutralization experiments revealed that immunity induced by COVID vaccines widely administered to human populations is not effective against BA.2, similar to BA.1, and that the antigenicity of BA.2 is notably different from that of BA.1. Cell culture experiments showed that the BA.2 spike confers higher replication efficacy in human nasal epithelial cells and is more efficient in mediating syncytia formation than the BA.1 spike. Furthermore, infection experiments using hamsters indicated that the BA.2 spike-bearing virus is more pathogenic than the BA.1 spike-bearing virus. Altogether, the results of our multiscale investigations suggest that the risk of BA.2 to global health is potentially higher than that of BA.1.
DOI: 10.17632/w6w7mv9ypt.1
title: Management of early breast cancer at an Australian cancer centre during the early phase of COVID-19 pandemic 

description: Breast cancer tumour and treatment data for women treated for early breast cancer during the early COVID-19 lockdown in 2020.
DOI: 10.17632/j4354vvmky.1
title: Long-term morphological evolution and its mechanism of Lingdingyang Estuary: Interferences from anthropogenic forcings

description: The database includes river boundary input, sediment boundary input, and the bathymetry data of the Lingdingyang estuary study area. The relevant data of runoff and sediment in upstream boundary input came from the Guangdong Provincial Department of Hydrology Bureau. These data provide data for long period model construction and validation.
DOI: 10.17632/4h57j6r2d4.2
title: Plio-Pleistocene fluvial dynamics in the pro-foreland basins of Taiwan Orogeny: thermochronological constraints and tectonic implications from the syn-orogenic deposits

description: In order to tackle the fast exhumation of the Taiwan Orogeny to the adjacent sedimentary basins, we report new results of zircon fission track (ZFT), calcareous nannofossil biostratigraphy, and diagnostic magnetic mineral tracer on syn-orogenic sediments of present-day river sands and Plio-Pleistocene sedimentary samples from pro-foreland basins of western Taiwan. ZFT age spectrum of the modern Dadu River corresponds well to exposed bed rock with reset zircon ages of 3-4 Myr and partially-reset zircon ages of 10-40 Myr. Age spectrum of the modern Choshui River, however, indicates a fast exhumed source with young peak age of 1.7 Myr which has not been widely explored and reported. The Pleistocene successions in the Dadu and the Choshui catchments both show younging upwards signals which mirrored the exhumation of sourced terranes. Nevertheless, variations of ZFT age population in conjunction with petrography and magnetic mineral tracer indicated very complex developments of sediment routing systems within each catchment for the past 1 Myr. Knowledge towards then-current sediment routing systems has great influences on our interpretations for the exhumation history. The maximum exhumation rates were estimated as 3.2 mm/yr for the Choshui River and 2.0 mm/yr for the Dadu River. In general, exhumation rates increased since 1 Myr with variations and the reorganization of the Choshui Rivers reflected the exhumation history of different tectonic provinces. The difference of exhumation rates across the Dadu and Choshui catchments suggests along-strike variation of exhumation in central Taiwan. In addition, the discrepancies between the Tamshui and Dadu catchments through time suggests the waning of exhumation in northern Taiwan, possibly resulting from the flipping of subduction polarity in a regional scale.
DOI: 10.17632/2mcfj7hw2y.1
title: PR gene expression in powdery mildew infected Hevea brasiliensis clones

description: Comparative analysis of the transcriptome profiles from Hevea brasiliensis clones highlights the differential expression of genes associated with pathogen response in powdery mildew infection. The data presented here is from two Malaysian rubber clones RRIM 2025 and RRIM 929 evaluated for all the significantly up-regulated and down-regulated PR genes involved in powdery mildew resistance.
DOI: 10.17632/cytbff9vgt.1
title: Dataset of Extension of duplexed single-ended distributed temperature sensing calibration algorithms and their application in geothermal systems

description: These data correspond to that presented in the manuscript "Extension of duplexed single-ended distributed temperature sensing calibration algorithms and their application in geothermal systems" by Lillo et al.
It consists in the raw and the calibrated distributed temperature sensing (DTS) data from boreholes in Northern Chile (DDH009, DDH2457 and RC151), Central Chile (DAND) and a Laboratory experiment (DIHA).
DOI: 10.17632/f5t4kvmn8g.1
title: EP-traffic-mortality-and-policy-interventions-dataset

description: The EP-Traffic-Mortality-and-Policy-Interventions Dataset provides road safety data for 2010–2020. It includes two primary and five secondary data subsets. The primary data subsets include road accident mortality and traffic safety policy interventions data. The secondary data subsets include accident mortality subsets for different time scales and administrative levels.
DOI: 10.48370/ofd/zwkfzz
title: Stictoleptura erythroptera (Hagenbach, 1822), C-680

description: Coleoptera collection