cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3712942
title: Dataset related to article "Oocyte Cryopreservation in Oncological Patients: Eighteen Years Experience of a Tertiary Care Referral Center."

description: <strong>Objective:</strong> The aim of the present study is to report our experience on elective women fertility preservation before cancer treatment. <strong>Study Design:</strong> This is a single-center retrospective observational study, including all patients who underwent elective fertility preservation before oncological treatment between January 2001 and March 2019 at our Institute. <strong>Results:</strong> Of a total of 568 women who received fertility counseling, 244 (42.9%) underwent 252 oocyte retrieval cycles after controlled ovarian stimulation for cryopreservation. The majority of patients were diagnosed with breast cancer (59.9%), followed by women affected by Hodgkin's and non-Hodgkin's lymphoma (27.4%). A minority comprised patients diagnosed with other malignancies that affected soft tissues (2.8%), ovary borderline type (2.4%), digestive system (1.6%), leukemia (1.6%), uterine cervix (1.2%). The remaining 3.1% were affected by other cancer types. The mean age of the cohort was 31.3 ± 6.4 years and the mean oocyte retrieval was 13.5± 8.4. Of 11 women who returned to attempt a pregnancy, three performed two thawed cycles. We obtained four pregnancies from 24 embryo transfers (Pregnancy Rate 36.4% for couple): two miscarriages and two live births. Overall, 95.7% of oocytes are still in storage. <strong>Conclusions:</strong> A close collaboration between Cancer and Fertility Center in a tertiary care hospital is essential to provide a good health service in oncological patients. Offering fertility preservation is no longer considered optional and must be included in every therapeutic program for women who receive an oncological diagnosis in their reproductive age. Oocyte cryopreservation appears to be a good opportunity for fertility preservation. Our results, although they are obtained in a small sample, are encouraging, even if only 4.5% of patients returned to use their gametes.
DOI: 10.5281/zenodo.3713173
title: Mass spectrometry data for interactive volcano plots - by van der Weegen et al.

description: These datasets are generated by Yana van der Weegen et al. (2020) and part of the publication "The sequential and cooperative action of CSB, CSA and UVSSA targets the TFIIH complex to DNA damage-stalled RNA polymerase II" to be published in Nature Communications. The CSV files are used as input to generate (interactive) volcano plots, using the web app VolcanoNoseR. The code is archived here: https://zenodo.org/record/3625858 The most up-to-date version of the interactive web app is available here: https://huygens.science.uva.nl/VolcaNoseR/
DOI: 10.6073/pasta/62450f0b3e2343160973182814746b06
title: Genetic survey of bacterioplankton communities of aquatic habitats in Green Lakes Valley, 2014 - 2017

description: Previous work has shown high-elevation ecosystems are especially susceptible to the effects of climate change, but little work has been done on microbial communities in high-elevation aquatic systems. Therefore, my research aimed to improve our understanding of the composition, stability, and factors controlling microbial communities in high-elevation lakes in the Front Range of the Colorado Rocky Mountains. I studied seasonal and inter-annual variations in bacterial (16S rDNA) and eukaryotic (18S rDNA) microbial communities at multiple locations (inlet, outlet, three depths in the water column) within alpine lakes over four years (2014-2017). Communities significantly differed between lake inlets and the lakes as a whole across sampling dates. The most significant variable controlling 16S and 18S community composition was lake discharge rate, indicating that water residence times play a strong role in structuring communities.
DOI: 10.5281/zenodo.3713281
title: Dataset related to article "Survival outcome of tyrosine kinase inhibitors beyond progression in association to radiotherapy in oligoprogressive EGFR-mutant non-small-cell lung cancer."

description: <strong>Aim:</strong> The association of tyrosine kinase inhibitors (TKIs) and local radiotherapy in <em>EGFR</em>-mutated non-small-cell lung cancer patients experiencing disease progression under TKIs could be a valid an option. <strong>Patients & methods:</strong> We included 131 patients experiencing disease progression during first-line TKI. In group A, patients received TKI beyond progression and site(s) of progression were irradiated; in group B, patients remained on TKI alone beyond progression; and group C stopped TKI at first disease progression. <strong>Results:</strong> Median overall survival resulted longer in group A versus B and C (p &lt; 0.0001). Group A had a trend toward a longer second progression-free survival (measured from the time of first progression until second progression) versus group B (p = 0.06). <strong>Conclusion:</strong> TKI beyond progression in association with local ablative treatment is a valid treatment option in oligoprogressive patients.
DOI: 10.5281/zenodo.3713282
title: Dataset related to article "Survival outcome of tyrosine kinase inhibitors beyond progression in association to radiotherapy in oligoprogressive EGFR-mutant non-small-cell lung cancer."

description: <strong>Aim:</strong> The association of tyrosine kinase inhibitors (TKIs) and local radiotherapy in <em>EGFR</em>-mutated non-small-cell lung cancer patients experiencing disease progression under TKIs could be a valid an option. <strong>Patients & methods:</strong> We included 131 patients experiencing disease progression during first-line TKI. In group A, patients received TKI beyond progression and site(s) of progression were irradiated; in group B, patients remained on TKI alone beyond progression; and group C stopped TKI at first disease progression. <strong>Results:</strong> Median overall survival resulted longer in group A versus B and C (p &lt; 0.0001). Group A had a trend toward a longer second progression-free survival (measured from the time of first progression until second progression) versus group B (p = 0.06). <strong>Conclusion:</strong> TKI beyond progression in association with local ablative treatment is a valid treatment option in oligoprogressive patients.
DOI: 10.15468/m3p40y
title: Wrong side of the leaf: assigning some Lithocolletinae species (Lepidoptera: Gracillariidae) to their proper genera

description: This dataset contains the digitized treatments in Plazi based on the original journal article Eiseman, Charles S., Davis, Donald R. (2020): Wrong side of the leaf: assigning some Lithocolletinae species (Lepidoptera: Gracillariidae) to their proper genera. Zootaxa 4751 (2): 201-237, DOI: https://doi.org/10.11646/zootaxa.4751.2.1
DOI: 10.6073/pasta/02844c2a8e38ccfe505727b4b1ceb6c3
title: Genetic survey of eukaryotic plankton communities of aquatic habitats in Green Lakes Valley, 2014 - 2017

description: Previous work has shown high-elevation ecosystems are especially susceptible to the effects of climate change, but little work has been done on microbial communities in high-elevation aquatic systems. Therefore, my research aimed to improve our understanding of the composition, stability, and factors controlling microbial communities in high-elevation lakes in the Front Range of the Colorado Rocky Mountains. I studied seasonal and inter-annual variations in bacterial (16S rDNA) and eukaryotic (18S rDNA) microbial communities at multiple locations (inlet, outlet, three depths in the water column) within alpine lakes over four years (2014-2017). Communities significantly differed between lake inlets and the lakes as a whole across sampling dates. The most significant variable controlling 16S and 18S community composition was lake discharge rate, indicating that water residence times play a strong role in structuring communities.
DOI: 10.5281/zenodo.3712933
title: Molecular absorption and evolution mechanisms of PM2.5 brown carbon revealed by electrospray ionization -Fourier-transform ion cyclotron resonance mass spectrometry during a severe winter pollution episode in Xi'an, China

description: 42 PM<sub>2<em>.</em>5</sub> samples were collected during a severe pollution episode in January 2017 over Xi’an, China for a comprehensive non-target and full scanning of Brown carbon molecules and their absorption properties using electrospray ionization–Fourier-transform ion cyclotron resonance mass spectrometry(FTICRMS). Here are the data sets of FTICRMS intensity, formula, organic carbon (OC) and absorption at 365nm of the 42 samples.
DOI: 10.5281/zenodo.3712932
title: Molecular absorption and evolution mechanisms of PM2.5 brown carbon revealed by electrospray ionization -Fourier-transform ion cyclotron resonance mass spectrometry during a severe winter pollution episode in Xi'an, China

description: 42 PM<sub>2<em>.</em>5</sub> samples were collected during a severe pollution episode in January 2017 over Xi’an, China for a comprehensive non-target and full scanning of Brown carbon molecules and their absorption properties using electrospray ionization–Fourier-transform ion cyclotron resonance mass spectrometry(FTICRMS). Here are the data sets of FTICRMS intensity, formula, organic carbon (OC) and absorption at 365nm of the 42 samples.
DOI: 10.15468/plsj5n
title: Four new and three newly recorded species of Diduga Moore, [1887] (Lepidoptera Erebidae, Arctiinae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bayarsaikhan, Ulziijargal, Li, Houhun, Im, Kyung-Hoan, Bae, Yang-Seop (2020): Four new and three newly recorded species of Diduga Moore, [1887] (Lepidoptera Erebidae, Arctiinae) from China. Zootaxa 4751 (2): 357-368, DOI: https://doi.org/10.11646/zootaxa.4751.2.10
DOI: 10.25625/kuwya4
title: Basiskompetenzen Digitalisierung

description: "Basiskompetenzen Digitalisierung" von Niedersächsisches Verbundprojekt "Basiskompetenzen Digitalisierung„ (Anna Ansari) ist lizenziert unter einer Creative Commons Namensnennung - Weitergabe unter gleichen Bedingungen 4.0 International Lizenz.
DOI: 10.25625/kuwya4/u2qdix
title: Basiskompetenzen_Digitalisierung_Anna_Ansari.jpg

description: :unav
DOI: 10.15468/kaa4bi
title: Heissiella donguri sp. nov. (Hemiptera: Heteroptera: Tingidae) feeding on Quercus gilva (Fagaceae): First representative of the genus from Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Souma, Jun, Ishikawa, Tadashi (2020): Heissiella donguri sp. nov. (Hemiptera: Heteroptera: Tingidae) feeding on Quercus gilva (Fagaceae): First representative of the genus from Japan. Zootaxa 4751 (2): 377-385, DOI: https://doi.org/10.11646/zootaxa.4751.2.12
DOI: 10.15468/9h3lcz
title: Five new species and a new record of Sathytes Westwood from eastern China (Coleoptera: Staphylinidae: Pselaphinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shen, Qi, Yin, Zi-Wei (2020): Five new species and a new record of Sathytes Westwood from eastern China (Coleoptera: Staphylinidae: Pselaphinae). Zootaxa 4751 (2): 386-394, DOI: https://doi.org/10.11646/zootaxa.4751.2.13
DOI: 10.15468/y9i8a5
title: The first Cacomorphocerus species (Coleoptera, Cantharidae) from Rovno amber a second species of the genus with 11 - segmented antennae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kazantsev, Sergey V., Perkovsky, Evgeny E. (2020): The first Cacomorphocerus species (Coleoptera, Cantharidae) from Rovno amber a second species of the genus with 11 - segmented antennae. Zootaxa 4751 (2): 395-400, DOI: https://doi.org/10.11646/zootaxa.4751.2.14
DOI: 10.15468/ok0hoj
title: Eusirus bonnieri sp. nov. (Crustacea: Amphipoda: Eusiridae), a new deep species from the southeastern Bay of Biscay (NE Atlantic Ocean)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Othaitz, Junkal Peña, Sorbe, Jean Claude (2020): Eusirus bonnieri sp. nov. (Crustacea: Amphipoda: Eusiridae), a new deep species from the southeastern Bay of Biscay (NE Atlantic Ocean). Zootaxa 4751 (2): 238-256, DOI: https://doi.org/10.11646/zootaxa.4751.2.2
DOI: 10.25387/g3.10262951
title: Supplemental Material for Lin, et al,. 2020

description: Supplemental Figures and Tables
DOI: 10.25387/g3.10262951.v1
title: Supplemental Material for Lin, et al,. 2020

description: Supplemental Figures and Tables
DOI: 10.15468/zbucxr
title: Taking a closer look: an SEM review of Levinsenia species (Polychaeta: Paraonidae) reported from California

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lovell, Lawrence L., Fitzhugh, Kirk (2020): Taking a closer look: an SEM review of Levinsenia species (Polychaeta: Paraonidae) reported from California. Zootaxa 4751 (2): 257-275, DOI: https://doi.org/10.11646/zootaxa.4751.2.3
DOI: 10.5258/soton/d1272
title: Dataset for 'Estimating the Generation of Garden Waste in England and the Differences between Rural and Urban Areas'

description: Survey data for 'Estimating the Generation of Garden Waste in England and the Differences between Rural and Urban Areas' Eades et al. 2020 DOI:10.3390/resources9010008
DOI: 10.5281/zenodo.3713178
title: Data and Code for Publication "Testing the Utility of Dental Morphological Trait Combinations for Inferring Human Neutral Genetic Variation"

description: Data and code for publication: H. Rathmann, H. Reyes-Centeno, Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation. <em>Proc. Natl. Acad. Sci. U.S.A.</em> 117, 10769-10777 (2020). DOI: 10.1073/pnas.1914330117 The repository contains: “R-code.txt”: R code for an exhaustive search algorithm testing the utility of dental morphological traits and trait combinations for inferring human neutral genetic variation. “dental trait frequencies.csv”: Data set with 27 dental morphological trait frequencies for 20 modern human populations worldwide used for analysis. Data from G. R. Scott, C. G. Turner, G. C. Townsend, M. Martinón-Torres, <em>The Anthropology of Modern Human Teeth</em> (Cambridge University Press, 2018). DOI: 10.1017/ 9781316795859 “microsatellite loci mean sizes.csv”: Data set with 645 microsatellite mean allele sizes for 20 modern human populations worldwide used for analysis. Data from T. J. Pemberton, M. DeGiorgio, N. A. Rosenberg, Population structure in a comprehensive genomic data set on human microsatellite variation. <em>G3: Genes Genom. Genet.</em> 3, 891–907 (2013). DOI: 10.1534/g3.113.005728 “utility estimates for 134217727 trait combinations.txt”: A large table with utility estimates for 27 dental morphological traits and all 134,217,700 possible trait combinations. Abbreviations for the 20 population names (rows) in “dental trait frequencies.csv” and “microsatellite loci mean sizes.csv” as follows: AUS = Australia CAS = Central Asia EAF = Eastern Africa EAS = East Asia EEU = Eastern Europe IND = India MAM = Mesoamerica MEL = Melanesia MIC = Micronesia NAF = North Africa NAM = North America NESI = Northeast Siberia NGU = New Guinea NWAM = Na-Dene POL = Polynesia SAM = South America SAN = San SEAS = Southeast Asia WEU = Western Europe WSAF = Sub-Saharan Africa Abbreviations for the 27 dental morphological trait names (columns) in “dental trait frequencies.csv” as follows: T1 = Winging (UI1) T2 = Shoveling (UI1) T3 = Double-Shoveling (UI1) T4 = Interruption Grooves (UI2) T5 = Tuberculum Dentale (UI2) T6 = Mesial Ridge (UC) T7 = Distal Accessory Ridge (UC) T8 = Hypocone (UM2) T9 = Carabelli Trait (UM1) T10 = Cusp 5 (UM1) T11 = Enamel Extensions (UM1) T12 = Peg-Reduced-Missing (UM3) T13 = Lingual Cusp Number (LP2) T14 = Groove Pattern (LM2) T15 = Cusp 6 (LM1) T16 = Cusp Number (LM2) T17 = Deflecting Wrinkle (LM1) T18 = Distal Trigonid Crest (LM1) T19 = Protostylid (LM1) T20 = Cusp 7 (LM1) T21 = Odontomes (UP-LP) T22 = Root Number (UP1) T23 = Root Number (UM2) T24 = Root Number (LC) T25 = Tomes’ Root (LP1) T26 = Root Number (LM1) T27 = Root Number (LM2) Abbreviations for the 645 microsatellite allele locus names (columns) in “microsatellite loci mean sizes.csv” as in T. J. Pemberton, M. DeGiorgio, N. A. Rosenberg, Population structure in a comprehensive genomic data set on human microsatellite variation. <em>G3: Genes Genom. Genet.</em> 3, 891–907 (2013). DOI: 10.1534/g3.113.005728
DOI: 10.5281/zenodo.3713179
title: Data and Code for Publication "Testing the Utility of Dental Morphological Trait Combinations for Inferring Human Neutral Genetic Variation"

description: Data and code for publication: H. Rathmann, H. Reyes-Centeno, Testing the utility of dental morphological trait combinations for inferring human neutral genetic variation. <em>Proc. Natl. Acad. Sci. U.S.A.</em> 117, 10769-10777 (2020). DOI: 10.1073/pnas.1914330117 The repository contains: “R-code.txt”: R code for an exhaustive search algorithm testing the utility of dental morphological traits and trait combinations for inferring human neutral genetic variation. “dental trait frequencies.csv”: Data set with 27 dental morphological trait frequencies for 20 modern human populations worldwide used for analysis. Data from G. R. Scott, C. G. Turner, G. C. Townsend, M. Martinón-Torres, <em>The Anthropology of Modern Human Teeth</em> (Cambridge University Press, 2018). DOI: 10.1017/ 9781316795859 “microsatellite loci mean sizes.csv”: Data set with 645 microsatellite mean allele sizes for 20 modern human populations worldwide used for analysis. Data from T. J. Pemberton, M. DeGiorgio, N. A. Rosenberg, Population structure in a comprehensive genomic data set on human microsatellite variation. <em>G3: Genes Genom. Genet.</em> 3, 891–907 (2013). DOI: 10.1534/g3.113.005728 “utility estimates for 134217727 trait combinations.txt”: A large table with utility estimates for 27 dental morphological traits and all 134,217,700 possible trait combinations. Abbreviations for the 20 population names (rows) in “dental trait frequencies.csv” and “microsatellite loci mean sizes.csv” as follows: AUS = Australia CAS = Central Asia EAF = Eastern Africa EAS = East Asia EEU = Eastern Europe IND = India MAM = Mesoamerica MEL = Melanesia MIC = Micronesia NAF = North Africa NAM = North America NESI = Northeast Siberia NGU = New Guinea NWAM = Na-Dene POL = Polynesia SAM = South America SAN = San SEAS = Southeast Asia WEU = Western Europe WSAF = Sub-Saharan Africa Abbreviations for the 27 dental morphological trait names (columns) in “dental trait frequencies.csv” as follows: T1 = Winging (UI1) T2 = Shoveling (UI1) T3 = Double-Shoveling (UI1) T4 = Interruption Grooves (UI2) T5 = Tuberculum Dentale (UI2) T6 = Mesial Ridge (UC) T7 = Distal Accessory Ridge (UC) T8 = Hypocone (UM2) T9 = Carabelli Trait (UM1) T10 = Cusp 5 (UM1) T11 = Enamel Extensions (UM1) T12 = Peg-Reduced-Missing (UM3) T13 = Lingual Cusp Number (LP2) T14 = Groove Pattern (LM2) T15 = Cusp 6 (LM1) T16 = Cusp Number (LM2) T17 = Deflecting Wrinkle (LM1) T18 = Distal Trigonid Crest (LM1) T19 = Protostylid (LM1) T20 = Cusp 7 (LM1) T21 = Odontomes (UP-LP) T22 = Root Number (UP1) T23 = Root Number (UM2) T24 = Root Number (LC) T25 = Tomes’ Root (LP1) T26 = Root Number (LM1) T27 = Root Number (LM2) Abbreviations for the 645 microsatellite allele locus names (columns) in “microsatellite loci mean sizes.csv” as in T. J. Pemberton, M. DeGiorgio, N. A. Rosenberg, Population structure in a comprehensive genomic data set on human microsatellite variation. <em>G3: Genes Genom. Genet.</em> 3, 891–907 (2013). DOI: 10.1534/g3.113.005728
DOI: 10.5281/zenodo.3712899
title: Point cloud data from terrestrial laser scanning for stem volume modelling of Scots pine trees

description: Stem volume is a key forest inventory attribute characterizing growth and yield of individual trees and forest stands. Three-dimensional information from terrestrial laser scanning (TLS) can be used to reconstruct tree stems and provide information on stem volume as well as stem shape. We collected diameter at breast height and height information with traditional field measurements as well as preprocessed TLS point cloud data on 230 Scots pine trees (<em>Pinus sylvestris L.</em>) from southern Finland. The data set here includes three-dimensional information on Scots pine tree stems derived from TLS point clouds. The usage of this data set can include, but is not limited to, development of point cloud processing algorithms for single tree stem reconstruction and investigations of of stem volume modelling for Scot pine. This data set includes two files: Scots_pines.txt includes DBH and height information based on field measurements from the 230 Scots pine trees. File includes the following columns: treeID, DBH, and h, where DBH is presented in cm and h (i.e. tree height) in m. Stem_points.zip, on the other hand, includes 230 laz-files where figure in the name of the laz-file refers to the tree ID in Scots_pines.txt-file. Laz-files include three columns that describe x, y, and z, coordinates (in meters) of stem points in a local coordinate system extracted from the normalized TLS point clouds (i.e. z coordinate describes height above ground).
description: {"references": ["Saarinen, N., Kankare, V., Py\u00f6r\u00e4l\u00e4, J., Yrttimaa, T., Liang, X., Wulder, M.A., Holopainen, M., Hyypp\u00e4, J., Vastaranta, M., 2019. Assessing the Effects of Sample Size on Parametrizing a Taper Curve Equation and the Resultant Stem-Volume Estimates. Forests, 10(10), 848. https://doi.org/10.3390/f10100848"]}
DOI: 10.5281/zenodo.3712900
title: Point cloud data from terrestrial laser scanning for stem volume modelling of Scots pine trees

description: Stem volume is a key forest inventory attribute characterizing growth and yield of individual trees and forest stands. Three-dimensional information from terrestrial laser scanning (TLS) can be used to reconstruct tree stems and provide information on stem volume as well as stem shape. We collected diameter at breast height and height information with traditional field measurements as well as preprocessed TLS point cloud data on 230 Scots pine trees (<em>Pinus sylvestris L.</em>) from southern Finland. The data set here includes three-dimensional information on Scots pine tree stems derived from TLS point clouds. The usage of this data set can include, but is not limited to, development of point cloud processing algorithms for single tree stem reconstruction and investigations of of stem volume modelling for Scot pine. This data set includes two files: Scots_pines.txt includes DBH and height information based on field measurements from the 230 Scots pine trees. File includes the following columns: treeID, DBH, and h, where DBH is presented in cm and h (i.e. tree height) in m. Stem_points.zip, on the other hand, includes 230 laz-files where figure in the name of the laz-file refers to the tree ID in Scots_pines.txt-file. Laz-files include three columns that describe x, y, and z, coordinates (in meters) of stem points in a local coordinate system extracted from the normalized TLS point clouds (i.e. z coordinate describes height above ground).
description: {"references": ["Saarinen, N., Kankare, V., Py\u00f6r\u00e4l\u00e4, J., Yrttimaa, T., Liang, X., Wulder, M.A., Holopainen, M., Hyypp\u00e4, J., Vastaranta, M., 2019. Assessing the Effects of Sample Size on Parametrizing a Taper Curve Equation and the Resultant Stem-Volume Estimates. Forests, 10(10), 848. https://doi.org/10.3390/f10100848"]}