cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15493/dea.mims.14002023
title: Temperature data from an exposed habitat in Elands Bay, 1 to 31 December 2022

description: Temperature data from an exposed habitat in Elands Bay, 1 to 31 December 2022.
description: To better understand the physiological effects of climate change and ocean acidification on marine organisms, information on the environmental conditions experienced in their natural habitats is required. Data from long-term monitoring studies capture in situ variability of environmental parameters that are used to relate experimental findings with field conditions. Elands Bay on the west coast of South Africa is a key location for such research and monitoring. It is a popular location for West Coast rock lobster fishing and therefore an important sentinel site for a commercial fishery species and the benthic communities upon which it depends. Low pH conditions exist along the west coast due to effects of upwelling, while cold-bottom waters in Elands Bay often result in low oxygen events responsible for mass walkouts of rock lobster. Additional exposure to extreme stressors associated with climate change can exacerbate impacts on their physiological processes. For example, acute thermal stress experienced during a marine heatwave may cause a rapid deterioration of cellular processes and performances beyond tolerance limits, affecting survival, growth and development. In South Africa, occurrences of marine heatwaves are increasing all along the coastline, and occur on average at least once a year. Data on temperature extremes are therefore important to design experiments and calculate thermal windows. We initiated long-term monitoring of inshore environmental parameters in Elands Bay by deploying temperature loggers in representative habitat types: intertidal rock pools varying in surface area, volume and position along the shore, sun-exposed habitats, and subtidal habitats. The sun-exposed logger is situated at the nearby Fisheries Research office where it is attached underneath the gutter close to the top of the roof (facing the sun but shaded). Here we present the cleaned up version of temperature data from an exposed habitat from 1 to 31 December 2022.
description: The details of the exposed logger are captured in the 'README' file. The HOBO TidbiT temperature logger was set to record temperature every 5 minutes. The logger is attached to the gutter at the back of the Fisheries Research office situated in Elands Bay. Data were extracted from the loggers using HOBOware Pro software and exported into Excel files. Times are GMT+2. The data available are the clean files (i.e. only temperatures recorded once logger was placed in its exposed position). To avoid the inclusion of any 'handling' temperatures in the clean datasets, the temperatures extracted are from ten minutes once loggers are deployed, and 10 minutes before they are removed to download data.
DOI: 10.15468/dl.qmn4cb
title: Occurrence Download

description: A dataset containing 866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocomia aculeata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 866 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018803-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dazrb5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callinectes sapidus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021093-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29578334
title: peak positions of medicinal chemistry

description: 200 mg of Cordyceps Qingfei powders was added to 10 mL of 50% methanol aqueous solution, and ultrasonicated for 30 minutes.
DOI: 10.6084/m9.figshare.29578334.v1
title: peak positions of medicinal chemistry

description: 200 mg of Cordyceps Qingfei powders was added to 10 mL of 50% methanol aqueous solution, and ultrasonicated for 30 minutes.
DOI: 10.15468/dl.gqqxps
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021094-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfdzh9
title: Occurrence Download

description: A dataset containing 22876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Todiramphus chloris chloris, Todiramphus australasia, Todiramphus albonotatus, Todiramphus albicilla, Tanysiptera sylvia, Tanysiptera riedelii, Tanysiptera nympha, Tanysiptera nigriceps, Tanysiptera hydrocharis, Tanysiptera galatea, Tanysiptera danae, Tanysiptera carolinae)"
 ]
}

 The dataset includes 22876 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021095-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8v3brr
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myloplus asterias"
 ]
}

 The dataset includes 369 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021098-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nq8d9s
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimusops sechellarum"
 ]
}

 The dataset includes 264 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021097-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb963u
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulchriphyllium"
 ]
}

 The dataset includes 372 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021099-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kq5sp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Poa haemii, Poa latifolia, Poa quadripedalis, Poa quadripedalis, Poa quadripedalis, Poa remota chaixii, Poa rubens, Poa sclerophylla, Poa sclerophylla, Poa sudetica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021100-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28860113
title: Fossil <i>Punkochyzeria </i>gen. nov. (Acari: Chyzeriidae) from Cretaceous amber

description: Source image stacks of specimens, dataset for the paperPunk’s not dead? <i>Punkochyzeria</i> gen. nov. (Acari: Chyzeriidae) from Cretaceous amber from MyanmarVasiliy B. Kolesnikov, Ilya S. Turbanov, Dmitry D. VorontsovWe report the discovery of remarkable fossil mites, <i>Punkochyzeria</i> <b>gen. nov.</b>, in mid-Cretaceous Kachin amber from Myanmar. These postlarval stages of mites possess unusually long tufts of dorsal opisthosomal setae. The mites were initially identified as <i>Parachyzeria</i> Hirst, 1926, but detailed morphological analysis revealed several key characters, including the absence of a paradont or basidonts on the palptibia, suggesting a new genus. We describe three new species, <i>Punkochyzeria minaevi</i> <b>sp. nov.</b>, <i>Punkochyzeria makolae</i> <b>sp. nov.</b> and <i>Punkochyzeria khoyi</i> <b>sp. nov.</b>, which are distinguished by the form of the dorsal opisthosomal setae, the odontus/palptarsus ratio and the number of setae in the palptibial ctenidium. We also describe four specimens of <i>Punkochyzeria</i> <b>gen. nov.</b>, which are difficult to attribute to a species due to their poor state of preservation. The possible functions of the long dorsal setae are discussed. Notably, <i>P. makolae</i> <b>sp. nov.</b> and <i>P. khoyi</i> <b>sp. nov.</b> carry other mites as syninclusions, suggesting a phoretic relationship. This discovery extends the known diversity of Chyzeriidae mites into the Cretaceous and provides new insights into their evolutionary history and ecological interactions.Images in JPEG or TIFF format, zipped per specimen.<br>Scalebars included as separate files, insert pixel to pixel to the photo. FastStone image viewer (freeware) is recommended for viewing the stacks.<br>Compound microscopes Nikon E-800 with dry (10x, 20x), water (40x and 60x) and oil (100x) immersion optics and Zeiss AxioImager A2 with dry (40x, 63x) and oil immersion optics (100x) were used, with brightfield, polarized, differential interference contrast and incident illumination. Stacks of images, comprising multiple focal planes, were obtained with Olympus OM-D E-M10-II digital camera. Images were treated for color, digital noise and sharpness with Adobe Lightroom.Fluorescence imaging was performed using a Zeiss LSM-880 confocal laser scanning microscope (CLSM) equipped with an Airyscan super-resolution detector.Scanning electron microscopy (SEM) was performed using a Tescan Vega II SEM.<br><br>
DOI: 10.6084/m9.figshare.28860113.v1
title: Fossil <i>Punkochyzeria </i>gen. nov. (Acari: Chyzeriidae) from Cretaceous amber

description: Source image stacks of specimens, dataset for the paperPunk’s not dead? <i>Punkochyzeria</i> gen. nov. (Acari: Chyzeriidae) from Cretaceous amber from MyanmarVasiliy B. Kolesnikov, Ilya S. Turbanov, Dmitry D. VorontsovWe report the discovery of remarkable fossil mites, <i>Punkochyzeria</i> <b>gen. nov.</b>, in mid-Cretaceous Kachin amber from Myanmar. These postlarval stages of mites possess unusually long tufts of dorsal opisthosomal setae. The mites were initially identified as <i>Parachyzeria</i> Hirst, 1926, but detailed morphological analysis revealed several key characters, including the absence of a paradont or basidonts on the palptibia, suggesting a new genus. We describe three new species, <i>Punkochyzeria minaevi</i> <b>sp. nov.</b>, <i>Punkochyzeria makolae</i> <b>sp. nov.</b> and <i>Punkochyzeria khoyi</i> <b>sp. nov.</b>, which are distinguished by the form of the dorsal opisthosomal setae, the odontus/palptarsus ratio and the number of setae in the palptibial ctenidium. We also describe four specimens of <i>Punkochyzeria</i> <b>gen. nov.</b>, which are difficult to attribute to a species due to their poor state of preservation. The possible functions of the long dorsal setae are discussed. Notably, <i>P. makolae</i> <b>sp. nov.</b> and <i>P. khoyi</i> <b>sp. nov.</b> carry other mites as syninclusions, suggesting a phoretic relationship. This discovery extends the known diversity of Chyzeriidae mites into the Cretaceous and provides new insights into their evolutionary history and ecological interactions.Images in JPEG or TIFF format, zipped per specimen.<br>Scalebars included as separate files, insert pixel to pixel to the photo. FastStone image viewer (freeware) is recommended for viewing the stacks.<br>Compound microscopes Nikon E-800 with dry (10x, 20x), water (40x and 60x) and oil (100x) immersion optics and Zeiss AxioImager A2 with dry (40x, 63x) and oil immersion optics (100x) were used, with brightfield, polarized, differential interference contrast and incident illumination. Stacks of images, comprising multiple focal planes, were obtained with Olympus OM-D E-M10-II digital camera. Images were treated for color, digital noise and sharpness with Adobe Lightroom.Fluorescence imaging was performed using a Zeiss LSM-880 confocal laser scanning microscope (CLSM) equipped with an Airyscan super-resolution detector.Scanning electron microscopy (SEM) was performed using a Tescan Vega II SEM.<br><br>
DOI: 10.15468/dl.vd29hd
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba scabra"
 ]
}

 The dataset includes 80 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021101-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjbakb
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crambe armena"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021102-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29578388.v1
title: source code for EMO

description: Non-coding mutations play a critical role in regulating gene expression, yet predicting their effects across diverse tissues and cell types remains a challenge. Here, we present EMO, a transformer-based model that integrates DNA sequence with chromatin accessibility data (ATAC-seq) to predict the regulatory impact of non-coding single nucleotide polymorphisms (SNPs) on gene expression. A key component of EMO is its ability to incorporate personalized functional genomic profiles, enabling individual-level and disease-contextual predictions, and addressing critical limitations of current approaches. EMO generalizes across tissues and cell types by modeling both short- and long-range regulatory interactions and capturing dynamic gene expression changes associated with disease progression. In benchmark evaluations, the pretraining-based EMO framework outperformed existing models, with fine-tuning small-sample tissues enhancing the model's ability to fit target tissues. In single-cell contexts, EMO accurately identified cell-type-specific regulatory patterns and successfully captured the effects of disease-associated SNPs in conditions, linking genetic variation to disease-relevant pathways.
DOI: 10.15468/dl.74t8mj
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lilium leucanthum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 104 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021104-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6xzav
title: Occurrence Download

description: A dataset containing 1604 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium obtusiflorum"
 ]
}

 The dataset includes 1604 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021103-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsmf3s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arundo donax",
 "Country is Zambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021106-250711103210423/datasets/export for details.
DOI: 10.1594/pangaea.965772
title: Paired d18O and Sr/Ca, and reconstructed d18Osw records of Porites sp. from Rotuma (RO2) and Tonga (TNI2), Southwest Pacific

description: Two massive living Porites sp. coral colonies from Southwest Pacific were cored: from Rotuma, in 1998 (RO2), and from Tonga in 2004 (TNI2). TNI2 coral has previously published d18O time series (Linsley et al. 2008). Coral skeletal material was micro-sampled with a 0.5 mm drill bit, using a handheld Proxxon drill, in continuous 1 mm increments along the maximum growth axis to obtain close to monthly resolution. Samples were analyzed for d18O (RO2) and Sr/Ca (RO2, TNI2) allowing the reconstruction of d18Osw from both corals following the method of Ren et al. (2002). The trace element analysis of TNI2 was completed in every other mm resolution to match the resolution of Linsley et al. (2008). RO2 d18O was measured from individual skeletal powders at the MARUM, Germany, using a Thermo-Finnigan MAT 251 and MAT 253 gas isotope ratio mass spectrometer with Kiel I and Kiel IV automated carbonate preparation devices. Trace elements were measured at the Leibniz Centre for Tropical Marine Research, Germany on the Analytik Jena PlasmaQuant MS Elite Inductively Coupled Plasma Mass Spectrometer. Data was interpolated into monthly resolution using the ARAND software Ager and Timer (Howell et al., 2006), and is dating back to 1821 in Rotuma, and 1848 in Tonga. The coral proxy data of this dataset provides sea surface temperature and salinity reconstructions from the data poor regions of West Pacific Warm Pool and South Pacific Convergence Zone extending the sparse instrumental and gridded data products available.
DOI: 10.15468/dl.sw2mzw
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 611 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021105-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9dxr9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dryobates pubescens)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021107-250711103210423/datasets/export for details.
DOI: 10.15468/dl.n2xdma
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cupressus chengiana"
 ]
}

 The dataset includes 203 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021108-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yurjm
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 324 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021112-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yw59k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arundo donax",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021113-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nx96e
title: Occurrence Download

description: A dataset containing 908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyalis"
 ]
}

 The dataset includes 908 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021110-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.54251
title: Stable oxygen and carbon isotopes measured on Cyclorbiculina compressa
DOI: 10.15468/dl.pg9gzm
title: Occurrence Download

description: A dataset containing 11566 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium perfoliatum"
 ]
}

 The dataset includes 11566 records from 457 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021109-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mtqac
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADM1737"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021114-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29578391
title: catena_research_data

description: <b>The data is about r</b><b>ainfall </b><b>patterns </b><b>and catchment characteristics interactively</b><b> </b><b>regulate nitrogen and phosphorus dynamics in agricultural</b><b> </b><b>ponds</b>
DOI: 10.6084/m9.figshare.29578391.v1
title: catena_research_data

description: <b>The data is about r</b><b>ainfall </b><b>patterns </b><b>and catchment characteristics interactively</b><b> </b><b>regulate nitrogen and phosphorus dynamics in agricultural</b><b> </b><b>ponds</b>