cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6464114
title: Laboratory validation of a smartphone-based sensor for diffuse optical volume properties

description: This data set contains raw image data for laboratory validation of a diffuse-optical, smartphone-based sensor. The measurements were taken using scattering phantoms with known scattering and absorption coefficient. The raw image files have been converted to an uncompressed Adobe-.dng file format, file names indicate whether the file contains data for the three scattering phantoms (One, Two, Three) or spatial calibration data using a 9mm x 9mm calibration pattern (calib). The raw images are located in the folder ./calib. Matlab code is contained in the filder ./matlab. It can be run on Matlab R2021b. For analyzing the raw data set, use "CameraBatchCalib.m". It wraps around the function "CameraAnalysisCalib.m", which performs the image analysis and least-square fit to resorted and rescaled data, employing in turn the model function "theosurfG.m". The resulting data is plotted for comparison with the nominal attenuation length of the scattering phantoms. If you wish to use this data set please contact Markus Allgaier at markusa@uoregon.edu with a description of the work and any questions so that we may offer guidance in regards to the best usage of our dataset and code. When using the data set within a publication, please cite: Markus Allgaier & Brian Smith, "A Smartphone-Based Sensor for Measuring the Optical Properties of Snow", in preparation, (2022). The underlying fit function is based on the calculations from: Markus Allgaier and Smith, Diffuse optics for glaciology, Opt. Express 29, 18845–18864 (2021)
DOI: 10.5281/zenodo.6463389
title: HIKARI-2021: Generating Network Intrusion Detection Dataset Based on Real and Encrypted Synthetic Attack Traffic

description: Available datasets from the paper Generating Encrypted Network Traffic for Intrusion Detection Datasets. To produce the dataset follow the technical detail in github
DOI: 10.5281/zenodo.4782195
title: HIKARI-2021: Generating Network Intrusion Detection Dataset Based on Real and Encrypted Synthetic Attack Traffic

description: Available datasets from the paper Generating Encrypted Network Traffic for Intrusion Detection Datasets. To produce the dataset follow the technical detail in github
DOI: 10.6084/m9.figshare.19606754
title: Additional file 1 of The prevalence of subthreshold psychiatric symptoms and associations with alcohol and substance use disorders: from a nationally representative survey of 36,309 adults

description: Additional file 1: Supplement 1. Lifetime Prevalence for Subthreshold Psychiatric Symptoms (SPS) by sociodemographic characteristic.
DOI: 10.6084/m9.figshare.19606754.v1
title: Additional file 1 of The prevalence of subthreshold psychiatric symptoms and associations with alcohol and substance use disorders: from a nationally representative survey of 36,309 adults

description: Additional file 1: Supplement 1. Lifetime Prevalence for Subthreshold Psychiatric Symptoms (SPS) by sociodemographic characteristic.
DOI: 10.6084/m9.figshare.19606757
title: Additional file 2 of The prevalence of subthreshold psychiatric symptoms and associations with alcohol and substance use disorders: from a nationally representative survey of 36,309 adults

description: Additional file 2: Supplement 2. Relative Risk Ratios (RRR) for Lifetime Subthreshold Psychiatric Symptoms (SPS) and Disorder by sociodemographic characteristics.
DOI: 10.6084/m9.figshare.19606757.v1
title: Additional file 2 of The prevalence of subthreshold psychiatric symptoms and associations with alcohol and substance use disorders: from a nationally representative survey of 36,309 adults

description: Additional file 2: Supplement 2. Relative Risk Ratios (RRR) for Lifetime Subthreshold Psychiatric Symptoms (SPS) and Disorder by sociodemographic characteristics.
DOI: 10.6084/m9.figshare.19606814
title: Additional file 2 of Mitochondrial supplementation of Sus scrofa metaphase II oocytes alters DNA methylation and gene expression profiles of blastocysts

description: Additional file 2: Table S1. Summary statistics from Sus scrofa oocyte and blastocyst WGBS data analyses. Table S2. A list of DMRs between ICSI- and mICSI-derived blastocysts commonly identified by three DMR callers. Table S3. GO enrichment analysis for genomic features related to DMRs in the biological process category, analysed by PANTHER ( http://www.pantherdb.org/ ). Table S4. GO enrichment analysis for genomic features related to DMRs in the molecular function category, analysed by PANTHER ( http://www.pantherdb.org/ ). Table S5. GO enrichment analysis for genomic features related to unique DMRs in the Oocyte vs ICSI-derived blastocyst comparison. Table S6. GO enrichment analysis for genomic features related to DMRs unique in the Oocyte vs mICSI-derived blastocyst comparison. Table S7. Summary statistics of RNAseq data for ICSI- and mICSI-derived blastocysts. Table S8. Prediction of microRNA ssc-miR-10390 target genes in the Sus scrofa genome determined by miRanda. Table S9. Mitochondrial gene expression in ICSI- and mICSI-derived blastocysts. Table S10. DMRs associated with potential DEGs. Table S11. Blastocyst development rates following ICSI and mICSI.
DOI: 10.6084/m9.figshare.19606814.v1
title: Additional file 2 of Mitochondrial supplementation of Sus scrofa metaphase II oocytes alters DNA methylation and gene expression profiles of blastocysts

description: Additional file 2: Table S1. Summary statistics from Sus scrofa oocyte and blastocyst WGBS data analyses. Table S2. A list of DMRs between ICSI- and mICSI-derived blastocysts commonly identified by three DMR callers. Table S3. GO enrichment analysis for genomic features related to DMRs in the biological process category, analysed by PANTHER ( http://www.pantherdb.org/ ). Table S4. GO enrichment analysis for genomic features related to DMRs in the molecular function category, analysed by PANTHER ( http://www.pantherdb.org/ ). Table S5. GO enrichment analysis for genomic features related to unique DMRs in the Oocyte vs ICSI-derived blastocyst comparison. Table S6. GO enrichment analysis for genomic features related to DMRs unique in the Oocyte vs mICSI-derived blastocyst comparison. Table S7. Summary statistics of RNAseq data for ICSI- and mICSI-derived blastocysts. Table S8. Prediction of microRNA ssc-miR-10390 target genes in the Sus scrofa genome determined by miRanda. Table S9. Mitochondrial gene expression in ICSI- and mICSI-derived blastocysts. Table S10. DMRs associated with potential DEGs. Table S11. Blastocyst development rates following ICSI and mICSI.
DOI: 10.5281/zenodo.6463092
title: First record of oceanic anoxic event 1d at southern high latitudes: Sedimentary and geochemical evidence from International Ocean Discovery Program Expedition 369

description: Oceanic anoxic event 1d (OAE 1d) has been well studied at northern low latitudes (i.e., in Tethys and the North Atlantic); however, the paleoenvironmental response associated with this event at high latitudes has not been documented and the trigger mechanism remains unknown. Here, we address both of these shortcomings by presenting the first detailed sedimentary and geochemical multi-proxy records of the OAE 1d at southern high latitudes (60-62°S), obtained from sediments at Site U1513, IODP Expedition 369. In particular, the record of sedimentary mercury proxy reveals that OAE 1d is associated with the Central Kerguelen large igneous province volcanism. Furthermore, the significant increase in continental runoff and consequent terrigenous input for southwestern Australia in the southeastern proto-India Ocean might have resulted regionally in weakened bottom-water oxygenation and strengthened organic matter burial during OAE 1d. Oceanic anoxic event 1d (OAE 1d) has been well studied at northern low latitudes (i.e., in Tethys and the North Atlantic); however, the paleoenvironmental response associated with this event at high latitudes has not been documented and the trigger mechanism remains unknown. Here, we address both of these shortcomings by presenting the first detailed sedimentary and geochemical multi-proxy records of the OAE 1d at southern high latitudes (60-62°S), obtained from sediments at Site U1513, IODP Expedition 369. In particular, the record of sedimentary mercury proxy reveals that OAE 1d is associated with the Central Kerguelen large igneous province volcanism. Furthermore, the significant increase in continental runoff and consequent terrigenous input for southwestern Australia in the southeastern proto-India Ocean might have resulted regionally in weakened bottom-water oxygenation and strengthened organic matter burial during OAE 1d.
DOI: 10.5281/zenodo.6358037
title: First record of oceanic anoxic event 1d at southern high latitudes: Sedimentary and geochemical evidence from International Ocean Discovery Program Expedition 369

description: Oceanic anoxic event 1d (OAE 1d) has been well studied at northern low latitudes (i.e., in Tethys and the North Atlantic); however, the paleoenvironmental response associated with this event at high latitudes has not been documented and the trigger mechanism remains unknown. Here, we address both of these shortcomings by presenting the first detailed sedimentary and geochemical multi-proxy records of the OAE 1d at southern high latitudes (60-62°S), obtained from sediments at Site U1513, IODP Expedition 369. In particular, the record of sedimentary mercury proxy reveals that OAE 1d is associated with the Central Kerguelen large igneous province volcanism. Furthermore, the significant increase in continental runoff and consequent terrigenous input for southwestern Australia in the southeastern proto-India Ocean might have resulted regionally in weakened bottom-water oxygenation and strengthened organic matter burial during OAE 1d. Oceanic anoxic event 1d (OAE 1d) has been well studied at northern low latitudes (i.e., in Tethys and the North Atlantic); however, the paleoenvironmental response associated with this event at high latitudes has not been documented and the trigger mechanism remains unknown. Here, we address both of these shortcomings by presenting the first detailed sedimentary and geochemical multi-proxy records of the OAE 1d at southern high latitudes (60-62°S), obtained from sediments at Site U1513, IODP Expedition 369. In particular, the record of sedimentary mercury proxy reveals that OAE 1d is associated with the Central Kerguelen large igneous province volcanism. Furthermore, the significant increase in continental runoff and consequent terrigenous input for southwestern Australia in the southeastern proto-India Ocean might have resulted regionally in weakened bottom-water oxygenation and strengthened organic matter burial during OAE 1d.
DOI: 10.5519/qd.7u50n79j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (212853 records)
DOI: 10.5519/qd.997mckiv
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (212853 records)
DOI: 10.6084/m9.figshare.19606840
title: Datasets supporting the adoption of multifunctional cover crops related to soil water and nitrogen in water-limited environments

description: Datasets for the understanding of the place of multifunctional cover crops as an alternative paradigm to conventional fallow in water-limited environments. The data contains crop resource quantity (biomass, N uptake, fixed shoot N, and water use), resource quality (C/N ratio, lignin, acid detergent fibre, and N concentration), and soil status (plant available water and mineral N) at field scale. This data supports the framework of the continuous development of alternative innovative cropping systems that have the potential to increase and maintain crop yield while minimizing the adverse effects of fallowing in the context of sustainable intensification.
DOI: 10.6084/m9.figshare.19606840.v2
title: Datasets supporting the adoption of multifunctional cover crops related to soil water and nitrogen in water-limited environments

description: Datasets for the understanding of the place of multifunctional cover crops as an alternative paradigm to conventional fallow in water-limited environments. The data contains crop resource quantity (biomass, N uptake, fixed shoot N, and water use), resource quality (C/N ratio, lignin, acid detergent fibre, and N concentration), and soil status (plant available water and mineral N) at field scale. This data supports the framework of the continuous development of alternative innovative cropping systems that have the potential to increase and maintain crop yield while minimizing the adverse effects of fallowing in the context of sustainable intensification.
DOI: 10.6084/m9.figshare.19606840.v1
title: Datasets supporting the adoption of multifunctional cover crops related to soil water and nitrogen in water-limited environments

description: Datasets for the understanding of the place of multifunctional cover crops as an alternative paradigm to conventional fallow in water-limited environments. The data contains crop resource quantity (biomass, N uptake, fixed shoot N, and water use), resource quality (C/N ratio, lignin, acid detergent fibre, and N concentration), and soil status (plant available water and mineral N) at field scale. This data supports the framework of the continuous development of alternative innovative cropping systems that have the potential to increase and maintain crop yield while minimizing the adverse effects of fallowing in the context of sustainable intensification.
DOI: 10.5281/zenodo.6464129
title: Development of a machine learning model to predict non- durable response to anti-TNF therapy in Crohn's disease using transcriptome imputed from genotypes

description: This is the expression value predicted using PrediXcan version 7 to find a gene feature that can distinguish between patients with and without effect on infliximab. Among the various tissue models provided by PrediXcan v7, three models were selected and used: whole blood, Colon transverse, and terminal ileum of small intestine, and the predicted gene counts of each model were 6,294, 5,612 and 3,107. For each of the three models, predicted gene expression values and phenotype information per sample were submitted.
description: {"references": ["Gamazon ER\u2020, Wheeler HE\u2020, Shah KP\u2020, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC, Nicolae DL, Cox NJ, Im HK. (2015) A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. doi:10.1038/ng.3367."]}
DOI: 10.5281/zenodo.6464128
title: Development of a machine learning model to predict non- durable response to anti-TNF therapy in Crohn's disease using transcriptome imputed from genotypes

description: This is the expression value predicted using PrediXcan version 7 to find a gene feature that can distinguish between patients with and without effect on infliximab. Among the various tissue models provided by PrediXcan v7, three models were selected and used: whole blood, Colon transverse, and terminal ileum of small intestine, and the predicted gene counts of each model were 6,294, 5,612 and 3,107. For each of the three models, predicted gene expression values and phenotype information per sample were submitted.
description: {"references": ["Gamazon ER\u2020, Wheeler HE\u2020, Shah KP\u2020, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC, Nicolae DL, Cox NJ, Im HK. (2015) A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. doi:10.1038/ng.3367."]}
DOI: 10.6084/m9.figshare.19606834
title: database of tobermorite

description: The database of tobermorite consisting of informations of box, coordinate, energy, atomic force.
DOI: 10.6084/m9.figshare.19606834.v1
title: database of tobermorite

description: The database of tobermorite consisting of informations of box, coordinate, energy, atomic force.
DOI: 10.15151/esrf-es-686522368
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX, SAXS and CryoEM to study different biological macromolecules. Together, these groups address multiple pathways in animals, plants, bacteria and fungi. These studies will provide fundamental mechanistic insight regarding different processes critical for the survival and propagation of the relevant organism. Many groups in the BAG study proteins from pathogens to identify novel intervention points that can be the targeted with small molecule inhibitors to inhibit the growth of the corresponding infectious agents. There are more than 50 groups that are part of this BAG and the allocated beamtime will be available for over 500 young researchers. A brief description of all the research groups is provided in the global summary and a summary of the research contributions involving data collected at ESRF is provided in the last BAG report.
DOI: 10.15151/esrf-es-686545740
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: The proposals covers a broad range of structural biology projects related to pathogen biology, host-pathogen interactions, RNA biology and structure-based drug development that are carried out by PIs at EMBL Grenoble, IBS-CIBB and IAB. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (e.g. Soleil, Petra III, Diamond, SLS).
DOI: 10.15151/esrf-es-701730389
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-735688879
title: Crystal structure of vermiculite and exfoliated single nanolayers.

description: The aim of the following proposal is to determine crystal structure of natural vermiculite clays of different types using synchrotron powder x-ray diffraction, before and after exfoliation into single nanolayers. Vermiculite is a 2:1 layered silicate, composed of 1 nm thin sheets kept together by interlayer cations. The structure of the thin nanolayer is complex, it consists of octahedral sheet sandwiched between the two tetrahedral sheets. We have acquired 12 types of vermiculite originating from different areas in the world, and we have managed to exfoliate most of them into the single nanolayers. However, the exfoliation process does not work the same for all of these vermiculite types. As we do not know the exact crystal structure of our vermiculites, we hence cannot estimate the charge of the nanolayers, that will explain the exfoliability of the material.
DOI: 10.6084/m9.figshare.19606864
title: hg19-blacklist.v2.bed.gz

description: hg19 blacklist
DOI: 10.6084/m9.figshare.19606861
title: ucsc.hg19.fasta

description: hg19 temporary
DOI: 10.6084/m9.figshare.19403327.v2
title: ISUAL energetic lightning list

description: The ISUAL energetic lightning list include the trigger time, lightning index, light pixels, lon/lat and spectral characteristics. <br>
DOI: 10.6084/m9.figshare.19403327.v3
title: The ISUAL intense lightning cataloged data with geolocations and spectral features.

description: The ISUAL lightning cataloged data, including trigger times, lightning indexes, light pixels, longitude/latitude and spectral features.<br>
DOI: 10.5281/zenodo.6464248
title: Online Supplement for An Arabic Version of The Visual Aesthetics of Websites Inventory (AR-VisAWI): Translation and Psychometric Properties

description: This is the online supplement for a translation of the Visual Aesthetics of Websites Inventory into Arabic (AR-VisAWI). In the field of human-computer interaction, the concept of visual aesthetics gained popularity after researchers started to recognize its merits and effects on user experience. Yet, no proper instrument exists to assess the visual aesthetics of websites that are intended for users who speak Arabic as their native language. As such, the aim of this study was to develop and evaluate an Arabic version of the Visual Aesthetics of Websites Inventory (VisAWI, Moshagen & Thielsch, 2010) and its short version (VisAWI-S, Moshagen & Thielsch, 2013). For this purpose, participants were asked to evaluate a randomly assigned website with the AR-VisAWI and with different validating instruments. A final sample of 223 participants was included in the analyses. This online supplement includes a codebook describing all instructions and items raw data (anonymised) and analysis script (Note: The raw data contains only the information of persons who have agreed to be included in the analysis. Some demographic information was deleted to ensure anonymity.) Questionnaire template and scoring instructions
DOI: 10.5281/zenodo.6464249
title: Online Supplement for An Arabic Version of The Visual Aesthetics of Websites Inventory (AR-VisAWI): Translation and Psychometric Properties

description: This is the online supplement for a translation of the Visual Aesthetics of Websites Inventory into Arabic (AR-VisAWI). In the field of human-computer interaction, the concept of visual aesthetics gained popularity after researchers started to recognize its merits and effects on user experience. Yet, no proper instrument exists to assess the visual aesthetics of websites that are intended for users who speak Arabic as their native language. As such, the aim of this study was to develop and evaluate an Arabic version of the Visual Aesthetics of Websites Inventory (VisAWI, Moshagen & Thielsch, 2010) and its short version (VisAWI-S, Moshagen & Thielsch, 2013). For this purpose, participants were asked to evaluate a randomly assigned website with the AR-VisAWI and with different validating instruments. A final sample of 223 participants was included in the analyses. This online supplement includes a codebook describing all instructions and items raw data (anonymised) and analysis script (Note: The raw data contains only the information of persons who have agreed to be included in the analysis. Some demographic information was deleted to ensure anonymity.) Questionnaire template and scoring instructions
DOI: 10.6084/m9.figshare.19568467
title: VIT D ONLY sheet.sav

description: Higher levels of serum 25-hydroxyvitamin D 25(OHD) are associated with better prognosis in breast and colorectal cancer. However, the evidence is still inconclusive for bladder cancer (BC). Herein, we investigated the diagnosis and prognosis roles of serum levels of 25(OHD) in suspected BC patients presented by hematuria.
DOI: 10.6084/m9.figshare.19568467.v1
title: VIT D ONLY sheet.sav

description: Higher levels of serum 25-hydroxyvitamin D 25(OHD) are associated with better prognosis in breast and colorectal cancer. However, the evidence is still inconclusive for bladder cancer (BC). Herein, we investigated the diagnosis and prognosis roles of serum levels of 25(OHD) in suspected BC patients presented by hematuria.
DOI: 10.34740/kaggle/dsv/3470267
title: BBC News
DOI: 10.6084/m9.figshare.19403327
title: The ISUAL intense lightning cataloged data with geolocation and spectral features

description: The ISUAL intense lightning cataloged data, including trigger times, lightning indexes, light pixels, longitude/latitude and spectral features.<br>
DOI: 10.6084/m9.figshare.19403327.v5
title: The ISUAL intense lightning cataloged data with geolocation and spectral features

description: The ISUAL intense lightning cataloged data, including trigger times, lightning indexes, light pixels, longitude/latitude and spectral features.<br>