cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tr94hm86.2/1.2
title: Table A2

description: Pairs were considered ‘in contact’ when i) specimens or field observations documented both taxa to occur in syntopy (actual contact), ii) both taxa were found at nearby localities (&lt; 20 km) in a continuous habitat (virtual contact), or iii) phenotypically intermediate birds (i.e., birds with intermediate plumage patterns or coloration, suggesting hybridization) were reported in the literature or found in ornithological collections. For those intermediate-looking specimens found in collections, we restricted our analyses to areas located in the geographically intervening regions between two taxa ranges (parapatric contact zones).
DOI: 10.5061/dryad.tr94hm86.2/2.2
title: Appendix_List of samples and accession numbers
DOI: 10.5061/dryad.16q12/1
title: all data used in the paper

description: Data available: i) presence and absence of tadpoles in the ponds; ii) tadpole traits; iii) characteristics of the ponds; and iv) geographic coordenates.
DOI: 10.5061/dryad.1s5rh/1
title: Great tit divorce-fidelity data

description: Data used to analyse the influence of the social environment of males and females on their future (i.e. to the next breeding season) divorce probability. F- female ID (ring number);	M- male ID;	status_t+1 - if a pair has divorced or stayed faithful to the next year;	F_degree	- number of associates a female had in winter; F_between_degree	- number of male associates female had in winter; partner_strength- association strength between pair members; F_partner_rank; 	M_degree - number of associates a male had in winter;	M_between_degree	;M_partner_rank;	new_old_pair	- is a pair newly formed or previously formed; f_experience	- had a female bred before; m_experience;	ever_seen_together- was a pair seen to associate in winter; Stand_laydate;	n_eggs;	winter
DOI: 10.5061/dryad.27pf7680.2
title: Data from: Integration of molecular, ecological, morphological and endosymbiont data for species delimitation within the Pnigalio soemius complex (Hymenoptera: Eulophidae)
DOI: 10.5061/dryad.27pf7680.2/1.2
title: COI_alignment

description: Fasta file containing aligned COI sequences
DOI: 10.5061/dryad.2h0g7/1
title: A_1 plasmid retroviral cDNA library QC

description: A raw data file of NGS anaysis of cDNA frequency of the PCR amplification products of retroviral cDNA library of plasmid mixture.
DOI: 10.5061/dryad.2h0g7/2
title: D_1 QC of retroviral vector library with bone marrow genomic DNA

description: To verify the effective ness of the retroviral cDNA library, bone marrow cells from the C57BL6 mouse were transduced withe library, and the cDNAs were amplified from the genomic DNA. The amplified PCR product was subjected to NGS analysis to evaluate equal contribution from different members of the library.
DOI: 10.5061/dryad.2kr90/2
title: Kutch & Fedorka: YRV & TTD data

description: This is an Excel file that contains data in three separate tabs. The first Tab is the YRV data, whose statistical analysis appears in Table 1 of the manuscript. Tab 2 is the Time to Death data, whose analysis appears in Table 2. Tab 3 is the correlation between the two data sets that appears in Figure 2.
DOI: 10.5061/dryad.371c6/1
title: PApops-DRYAD

description: Microsatellite data from Pantanal Jaguar populations. Each population is named after original collection site. The file is in genepop format. To analyse at genepop user should change population name for "Pop".
DOI: 10.5061/dryad.3bf67/4
title: Appendix 4 frames in resting webs

description: Raw data of tensile test of frame threads in resting webs with graphs regarding force-strain curve. In all graphs, X-axis is strain and Y-axis is force [mN]. First graph (above) is raw force-strain curve, second (middle) is thirty points' moving-averaged force-strain curve, and third (below) is extract of initial slope used for calculation of Young's modulus. All sample names described in each sheet in this category are designated as RF (meaning resting web frame thread) with the number behind hyphen representing each sample (individual web). In this category, there is no replicates (a thread from one web).
DOI: 10.5061/dryad.3bf67/5
title: Appendix 5 radii in cocoon webs

description: Raw data of tensile test of radii in cocoon webs with graphs regarding force-strain curve. In all graphs, X-axis is strain and Y-axis is force [mN]. First graph (above) is raw force-strain curve, second (middle or below) is thirty points' moving-averaged force-strain curve, and third (below) is extract of initial slope used for calculation of Young's modulus, if any. All sample names described in each sheet in this category are designated as CR (meaning cocoon web radius) with the number behind hyphen representing each sample (individual web) and the lowercase alphabet representing replicates.
DOI: 10.5061/dryad.3bf67/6
title: Appendix 6 frames in cocoon webs

description: Raw data of tensile test of frame threads in cocoon webs with graphs regarding force-strain curve. In all graphs, X-axis is strain and Y-axis is force [mN]. First graph (above) is raw force-strain curve, second (middle) is thirty points' moving-averaged force-strain curve, and third (below) is extract of initial slope used for calculation of Young's modulus. All sample names described in each sheet in this category are designated as CF (meaning cocoon web frame thread) with the number behind hyphen representing each sample (individual web) and the lowercase alphabet representing replicates.
DOI: 10.5061/dryad.3gj2p/17
title: UG Sim - Non-monotonic, initialized with monotonic procedure (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/18
title: UG Sim - Responders initialized to reject all offers (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/19
title: UG Sim - Responders initialized to accept all offers (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/20
title: UG Sim - Responders initialized to rational acceptance function (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/21
title: UG Sim - Both roles initialized to rational behavior (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/22
title: UG Sim - Proposers constrained to minimum non-zero offer (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/23
title: UG Sim - Responders constrained to accept only hyperfair offers (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/24
title: UG Sim - Roles separate and heritable (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/25
title: UG Sim - Monotonic with selection, very low mutation rate (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3n5c9/11
title: Appendix 1

description: Metadata for all samples employed in the study.
DOI: 10.5061/dryad.3n5c9/2
title: Appendix 2

description: Detailed methods for morphometric analyses.
DOI: 10.5061/dryad.3n5c9/3
title: Fig S1 - Shared loci tree

description: Neighbor-joining tree based on the proportion of shared RAD loci between individuals
DOI: 10.5061/dryad.3n5c9/4
title: Fig S2 - clustering vs loci

description: Clustering of individuals as a function of the number of RAD loci analysed.
DOI: 10.5061/dryad.3n5c9/5
title: stacks catalog

description: Catalog of putative RAD loci output from stacks pipeline.
DOI: 10.5061/dryad.40494/53
title: READ ME

description: Key to all other files
DOI: 10.5061/dryad.40kq7.1
title: Data from: Use of alpha, beta, and gamma diversity measures to characterize seed dispersal by animals
DOI: 10.5061/dryad.40kq7.2/1.2
title: Scofield-et-al_AmNat_52938_Quercus-agrifolia_adult-genotypes

description: Genotypes of adult Quercus agrifolia trees found in the study area of Sedgwick Reserve, Santa Barbara County, California. Data are in GenAlEx format, and represent diploid microsatellite genotypes at 10 loci. Loci are named following Scofield et al. 2010 J. Ecology.
DOI: 10.5061/dryad.40kq7.2/2.2
title: Scofield-et-al_AmNat_52938_Quercus-agrifolia_pericarp-genotypes

description: Genotypes of Quercus agrifolia collected from Acorn Woodpecker granaries at Sedgwick Reserve, Santa Barbara County, California, in 2006. Data are in GenAlEx format and represent diploid microsatellite genotypes. Genotypes are grouped by granary as indicated by the second column. Locus names follow Scofield et al. 2010 J. Ecology.
DOI: 10.5061/dryad.40kq7.2/3.2
title: Oenocarpus bataua microsat data

description: Microsatellite fragment lengths at 7 loci for the tropical palm species Oenocarpus bataua. Dataset includes seed (pericarp) tissue from seedlings collected in NW Ecuador
DOI: 10.5061/dryad.40qp5/1
title: C++ code for simulations of the evolution of life cycles.

description: The program simulates a haploid-diploid population under density-dependent control (logarithmic growth)
DOI: 10.5061/dryad.47ft4/1
title: Offspring_size_and_metabolic_rate_measurements

description: Log10 Mass and Log10 Metabolic rate data for Bugula neritina and Watersipora subtorquata.
DOI: 10.5061/dryad.47ft4/2
title: Bugula_larval_density

description: Bugula neritina larval volume and density measurements used to calculate mass.
DOI: 10.5061/dryad.47ft4/3
title: Watersipora_larval_density

description: Watersipora subtorquata larval volume and density measurements used to calculate mass.
DOI: 10.5061/dryad.47v3c/1
title: Ae. aegypti and Ae. albopictus occurrences

description: This datafile contains a comprehensive list of occurrences of Ae. aegypti and Ae. albopictus from 1960-2014.
DOI: 10.5061/dryad.47v3c/2
title: Ae. aegypti occurrences

description: Ae. aegypti occurrences 1960-2014
DOI: 10.5061/dryad.4cp98/1
title: Tsagkogeorga_et_al_alignments

description: Coding DNA Sequence (CDS) alignments including 23 mammals.
DOI: 10.5061/dryad.5sk13/1
title: An excel data collected during psychophysical experiments
DOI: 10.5061/dryad.75777/1
title: Data_All_150929

description: Single centre data from an Australian tertiary hospital regarding patient preferred name of address by healthcare staff, dislike of formal address by title and surname and the patient knowledge of their attending medical team
DOI: 10.5061/dryad.7h08c/1
title: Robert et al_data store

description: Excel file all data: light, melatonin & birth schedules
DOI: 10.5061/dryad.8h06d/1
title: Genotypic_Acoustic_Morphological_Preference_Data_Pseudacris

description: This file contains 5 worksheets: worksheet 1 describes identifiers used throughout data set; worksheet 2 (Genotypes (G)) encompasses 14 columns of microsatellite and mtDNA data; worksheet 3 (Call (C)) encompasses 21 columns of mean acoustic data; worksheet 4 (Morphology (M)) encompasses 11 columns of mean morphological measurements; worksheet 5 (Female Preference (F)) encompasses 6 columns of phonotaxis experimental results. For more detail refer to Methods and Table 1.
DOI: 10.5061/dryad.8t89m/1
title: Trat data of Daphnia pulex

description: Trait data for individual Daphnia pulex from either fish cue- or mideg cue treatment. Below follows a description of the column labels: CLONE - the maternal clone; POND - the pond from which the clone was collected; CUE TREATMENT - the predator cue added to the water; AGE MATURITY - age at maturity (days); SIZE MATURITY - the size at maturity (mm), ADULT GROWTH RATE - the increase in size as adults (day-1); R - the reproductive fitness calculated from the life table
DOI: 10.5061/dryad.bc4gk/2
title: Data for Biosensor Paper-c
DOI: 10.5061/dryad.dq1j6/1
title: FileS1_Models

description: 3-D models for  the D.rotundus nucleic acid sensing TLRs in PBD format
DOI: 10.5061/dryad.dq1j6/2
title: FileS2_Aln&Trees

description: Alignments and trees for the nucleic acid sensing TLRs from bats and other mammalian sequences in Fasta and Newick formats
DOI: 10.5061/dryad.dq1j6/3
title: FileS3_PAML

description: Complete PAML results (in mlc files for the M1/M2, M8a/M8 and BSA test)
DOI: 10.5061/dryad.mk067/1
title: Wood production maps for Europe

description: Zip folder containing maps as TIFF map images.
DOI: 10.5061/dryad.q2q84/1
title: Cattle Recombination Map

description: Male and female recombination maps
DOI: 10.5061/dryad.q2q84/2
title: Male Crossover Data

description: Crossover information for male meiosis
DOI: 10.5061/dryad.rb14v/1
title: Shedd_et_al_2015_Genepop

description: This is the Genepop file for "Ecological release lead to novel otogenetic diet shift in kokanee (Oncoryhnchus nerka)". The file contains 482 individuals genotyped at 14 microsatellite loci. The name of each sample includes the putative diet class based on stomach content analysis (Nonpiscivore, Piscivore, and Unknown), the year collected, and the individual identification number(s).
DOI: 10.5061/dryad.rb14v/2
title: Shedd_et_al_2015_StableIsotope

description: This file contains carbon and nitrogen stable isotope data for all aquatic samples analyzed in this study. Note that only samples collected in 2011 where analyzed for stable isotopes.
DOI: 10.5061/dryad.rb14v/3
title: Shedd_et_al_2015_StomachContents

description: This file contains the % of total weight stomach content data for the 64 kokanee stomachs collected in 2011. Column headings for each diet category are found in the caption for Figure 1.
DOI: 10.5061/dryad.rb14v/4
title: Shedd_et_al_2015_GillRaker

description: This file contains gill raker data for 161 kokanee.
DOI: 10.5061/dryad.rb14v/5
title: Shedd_et_al_2015_GeometricMorphometrics

description: This file contains geometric morphometric data on the relative warps for 124 kokanee.
DOI: 10.5061/dryad.v4cv6/1
title: Experimental frost damage data for eight subalpine plant species

description: This file contains data on the frost damage of eight subalpine plant species from the Rocky Mountains of Colorado (USA). These frost damage data can be used to calculate frost sensitivity for each species. Frost damage of plant tissue was determined after specimen were exposed to experimental temperature treatments. In the file, there is a column "temp_treatment_C" which is the target temperature for each treatment (in Celsius); there is another column "temp_observed_C", which is the actual temperature reached during the temperature treatment. Frost damage was scored as binary: damage = 1; no damage = 0. Frost trial number and frost trial start date refer to the specific series of temperature treatments. Collection of plant specimen and experimental procedures were conducted at the Rocky Mountain Biological Laboratory, Gothic, Colorado, USA.
DOI: 10.5061/dryad.v5gp1233.1
title: Data from: Divergent natural selection with gene flow along major environmental gradients in Amazonia: insights from genome scans, population genetics and phylogeography of the characin fish Triportheus albus
DOI: 10.5061/dryad.v5gp1233.2
title: Data from: Divergent natural selection with gene flow along major environmental gradients in Amazonia: insights from genome scans, population genetics and phylogeography of the characin fish Triportheus albus
DOI: 10.5061/dryad.v5gp1233.2/1.2
title: SardineSequence Information_GCOOKE

description: Mitochondrial ATPase 8, 6 Sequence data for 114 sequences of Triportheus albus including the sample identifier, haplotype label, GenBank accession number and ATPase 8, 6 DNA sequence.
DOI: 10.5061/dryad.v5gp1233.2/2.2
title: GCookeAFLP

description: 360 AFLP loci for 177 Triportheus albus including individual ID for each sample,the site label, latitude, longitude and loci identifier. Missing AFLP data is denoted with a blank space.
DOI: 10.5061/dryad.1rp0s/1
title: Plumage coloration in passerine birds

description: Plumage colour scores (N=5831 species) and  predictor variables (N = 2471 species) in passerine birds. This data set includes plumage scores for males and females as calculated from RGB (red, green, blue) values measured from plates in the Handbook of the Birds of the World (see text of article for details). Additionally we include the values of the 5 key predictor variables: 1) body size (first phylogenetic principle component (PPC1) of body mass and wing length), 2) tropical life history (PPC1 of latitude, seasonality and clutch size), 3) sexual selection (PPC1 of mating system, sexual size dimorphism and paternal care), 4) cooperative breeding (no = 0 and yes = 1) and 5) migration (none = 0, partial = 0.5 and complete = 1). All predictor variables were scaled to a mean = 0 and standard deviation = 1. These variables were used in the multiple predictor phylogenetic generalized least squares model, Markov Chain Monte Carlo generalized linear mixed models and phylogenetic controlled d separation path analysis (Table 1b, Figure 4 and Figure 5 of the article respectively). Scientific names, English names and TipLabels correspond to the phylogenetic trees provided by www.birdtree.org (Jetz, W., Thomas, G., Joy, J., Hartmann, K., & Mooers, A. 2012. The global diversity of birds in space and time. Nature, 491(7424), 444-448).
DOI: 10.5061/dryad.22hb2/1
title: Horgan-Kobelski et al 2015 Supporting Data

description: This spreadsheet contains the data presented in the figures, tables, and results of "Limits to future adaptation in an invasive plant: expression of functional and fitness traits at elevated CO2."
DOI: 10.5061/dryad.27pf7680.1
title: Data from: Integration of molecular, ecological, morphological and endosymbiont data for species delimitation within the Pnigalio soemius complex (Hymenoptera: Eulophidae)
DOI: 10.5061/dryad.27pf7680.2/2.2
title: ITS2_alignment

description: Fasta file containing ITS2 sequences aligned by using the MAFFT algorithm G-INS-i
DOI: 10.5061/dryad.27pf7680.2/3.2
title: Individual by individual infection status

description: PDF file containing Individual by individual infection status.
DOI: 10.5061/dryad.2v3h4/1
title: Dmel_denovo_assembly_VelvetOases.fa

description: D. melanogaster de novo assembly constructed using Velvet Oases
DOI: 10.5061/dryad.2v3h4/2
title: Dros_denovo_assembly_Trinity.fa

description: D. melanogaster de novo assembly constructed using Trinity
DOI: 10.5061/dryad.2v3h4/3
title: Drosophila guided assemblies

description: Guided assemblies constructed from D. melanogaster RNA-seq reads guided by the genomes of each of the other 11 drosophila species, constructed using Velvet Columbus
DOI: 10.5061/dryad.2v3h4/4
title: human-RNAseq_mapto_Gorilla-gorilla

description: Human RNA-seq reads aligned to the G. gorilla genome
DOI: 10.5061/dryad.2v3h4/5
title: human-RNAseq_mapto_Pan-troglodytes

description: Human RNA-seq reads aligned to the P. troglodytes genome
DOI: 10.5061/dryad.2v3h4/6
title: human-RNAseq_mapto_Pongo-abelii

description: Human RNA-seq reads aligned to the P. abelii genome
DOI: 10.5061/dryad.384rr593.2
title: Data from: Genomic signature of natural and anthropogenic stress in wild populations of the waterflea Daphnia magna: validation in space, time and experimental evolution
DOI: 10.5061/dryad.384rr593.2/1.2
title: Orsinietal_sequences_outliers_10kbRegions

description: List of sequences in fasta format obtained by mapping the outlier regions and 10kb up-and downstream to the genome sequence of Daphnia magna (V2.5-95). These sequence data were produced by The Center for Genomics and Bioinformatics at Indiana University and distributed via wFleaBase in collaboration with the Daphnia Genomics Consortium http://daphnia.cgb.indiana.edu. This project is supported in part by NIH award 5R24GM078274 "Daphnia Functional Genomics Resources" and by the METACyt Initiative of Indiana University, funded in part through a major grant from the Lilly Endowment, Inc. Our work benefits from and contributes to the Daphnia Genomics Consortium.
DOI: 10.5061/dryad.384rr593.2/2.2
title: Orsinietal_SNP_genotyping_space
DOI: 10.5061/dryad.384rr593.2/3.2
title: Orsinietal_SNP_genotyping_parasitecore
DOI: 10.5061/dryad.384rr593.2/4.2
title: Orsinietal_SNP_genotyping_landusecore
DOI: 10.5061/dryad.384rr593.2/5.2
title: Orsinietal_SNP_genotyping_fishcore
DOI: 10.5061/dryad.3gj2p/26
title: UG Sim - Monotonic with selection, low mutation rate (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/27
title: UG Sim - Monotonic with selection, high mutation rate (N = 100)

description: Ultimatum Game simulation data
DOI: 10.5061/dryad.3gj2p/28
title: UGS Data Legend

description: PDF file containing details regarding file format and organization
DOI: 10.5061/dryad.3n5c9/10
title: wing margins

description: Contains coordinates (in pixels) of the semi-landmarks describing the shape of the left forewing margin in tps format.
DOI: 10.5061/dryad.3n5c9/6
title: Genotypes genpop format

description: Filtered RAD loci in genpop format, input for PCAs and computation of pairwise genetic distances.
DOI: 10.5061/dryad.3n5c9/7
title: structure input file

description: input file for Structure.
DOI: 10.5061/dryad.3n5c9/8
title: structure mainparams

description: Contains parameters for Structure analysis
DOI: 10.5061/dryad.3n5c9/9
title: LDA data

description: Contains the first 4 PCs of wing margin shape, wing areas, eyespot areas, latitude and elevation of samples employed in the LDA.
DOI: 10.5061/dryad.5nf45/1
title: Scent-matching data on Puff Adders from meerkat and dog models

description: Data collected from scent-matching trials conducted on dog and meerkat models using puff adder scent, and scent from several other species of active foraging snakes
DOI: 10.5061/dryad.6cn66/1
title: Supplementary Figures
DOI: 10.5061/dryad.6cn66/2
title: Supplementary Tables
DOI: 10.5061/dryad.74bk6/1
title: HH11 PGK1:H2B-chFP Tiled Z Stack 20x.lsm. Part 1 of 7.

description: Dorsal view of a fixed stage HH11PGK1:H2B-chFP embryo counterstained with DAPI collected using a 20x objective on a Zeiss 780 confocal microscope and Zen 2011 black edition 64 bit software. Total file size is 3.48GB.  Part 1 of 7.
DOI: 10.5061/dryad.74bk6/2
title: HH11 PGK1:H2B-chFP Tiled Z Stack 20x.lsm. Part 2 of 7.
DOI: 10.5061/dryad.74bk6/3
title: HH11 PGK1:H2B-chFP Tiled Z Stack 20x.lsm. Part 3 of 7.
DOI: 10.5061/dryad.7nj7n/1
title: PilakoutaRichardsonSmisethJEB2015.csv

description: Raw data on biparental cooperation in the burying beetle Nicrophorus vespilloides. The data file contains information on contributions towards parental care by male and female parents and information on the body size of male and female parents.
DOI: 10.5061/dryad.kj4mh/1
title: make_repeated_assembly

description: Python script to perform iterative assemblies using MIRA 3.2 assembler
DOI: 10.5061/dryad.kj4mh/2
title: CDNA1-2_11_2010_1_final_assembly

description: Contig sequences of the assembled transcripts (FASTA + QUAL files) in gz compressed tar archive
DOI: 10.5061/dryad.kj4mh/3
title: stellatus_annot_GAF_20121111_1852

description: Contigs annotations obtained via Blast2GO (GAF) in zip archive
DOI: 10.5061/dryad.kj4mh/4
title: stellatus_kegg_txt_20121109_1825

description: KEGG pathways annotated via Blast2GO (TAB delimited file) in zip archive
DOI: 10.5061/dryad.kj4mh/5
title: stellatus_var

description: Putative SNP and INDEL data (VCF) in zip archive
DOI: 10.5061/dryad.m7t63/2
title: BasicHousekeeping2

description: Mathematica file
DOI: 10.5061/dryad.m8413/1
title: Supplemental Figure 1: Regression lines for OBD versus A-P length.

description: Regressions of outer borehole diameter (OBD) of predatory drill-holes on antero-posterior length (A-P length) of prey shells by locality (Pliocene and Recent). OBD is used as a proxy for predator size, therefore, plotting OBD by A-P length is used to detect significant relationships between predator and prey body size.
DOI: 10.5061/dryad.q202d/1
title: Marion Island case study

description: Data files from the Marion Island feral cat eradication covering hunting, killing, sighting and trapping events. Includes files used in order to prepare this dataset for analysis in SPADE.
DOI: 10.5061/dryad.q2q84/3
title: Female Crossover Data

description: Crossover data for female meiosis