cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/ssz3r9
title: On Hypnogyra laevissima (R, 1898) (Coleoptera: Staphylinidae: Staphylininae: Xantholinini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, Eitter Volker (2018): On Hypnogyra laevissima (R, 1898) (Coleoptera: Staphylinidae: Staphylininae: Xantholinini). Linzer biologische Beiträge 50 (1): 41-45, DOI: http://doi.org/10.5281/zenodo.3985240
DOI: 10.25387/g3.12445373
title: Supplemental Material for Gale et al., 2020

description: Supplemental Datasets
DOI: 10.25387/g3.12445373.v1
title: Supplemental Material for Gale et al., 2020

description: Supplemental Datasets
DOI: 10.25810/sxgc-n607
title: CMIP5 Zonal Velocity Volumes Near the Equator (3°S–3°N, 160°E–80°W, 0–400 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.15468/pkpsb7
title: Diversity and dispersal history of the talitrids (Crustacea: Amphipoda: Talitridae) of Bermuda

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wildish, D. J., Smith, S. R., Loeza-Quintana, T., Radulovici, A. E., Adamowicz, S. J. (2016): Diversity and dispersal history of the talitrids (Crustacea: Amphipoda: Talitridae) of Bermuda. Journal of Natural History 50: 1911-1933, DOI: 10.1080/00222933.2016.1180719, URL: http://dx.doi.org/10.1080/00222933.2016.1180719
DOI: 10.25810/knkn-0y84
title: CMIP6 Zonal Velocity Volumes Near the Equator (3°S–3°N, 160°E–80°W, 0–400 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.5517/ccdc.csd.cc23v2km
title: CCDC 1961480: Experimental Crystal Structure Determination

description: Related Article: Ananta Dey, Arunava Maity, Tufan Singha Mahapatra, Eingathodi Suresh, Amal Kumar Mandal, Amitava Das|2020|CrystEngComm|22|5117|doi:10.1039/D0CE00909A
DOI: 10.5517/ccdc.csd.cc244z4f
title: CCDC 1970984: Experimental Crystal Structure Determination

description: Related Article: Valeriy Cherepakhin, Ashley Hellman, Zhenzhuo Lan, Shaama Mallikarjun Sharada, Travis J. Williams|2020|Dalton Trans.|49|10509|doi:10.1039/D0DT01801E
DOI: 10.25810/n4xw-da75
title: CMIP3 Zonal Velocity Sections Along 93°W (3°S–3°N, 0–500 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.15468/dy2rgz
title: New locality and new habitat data of Philonthus nitidus (Fabr., 1787) (Coleoptera, Staphylinidae) in the Polish Carpathians

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mazur, Andrzej, Yan, Wei, Górz, Andrzej (2019): New locality and new habitat data of Philonthus nitidus (Fabr., 1787) (Coleoptera, Staphylinidae) in the Polish Carpathians. Zootaxa 4559 (3): 587-592, DOI: https://doi.org/10.11646/zootaxa.4559.3.11
DOI: 10.34740/kaggle/dsv/1432488
title: COVID-19 cases by Continent
DOI: 10.6073/pasta/70449da6c90055d7b614e8dc2998ba42
title: Tree Rings, Glacial Lakes State Park Site 1, Minnesota

description: Both increases in temperature and changes in precipitation may limit future tree growth, but rising atmospheric CO2 could offset some of these stressors through increased plant Water Use Efficiency (WUE). The net balance between the negative impacts of climate change and positive effects of CO2 on tree growth will be most important for systems already at plant physiological limits, where increased climate stress could drive mortality and shifts in range distribution. Here, we quantify the effects of climate, stand structure, and rising CO2 on both annual tree-ring growth increment and WUE at a savanna-forest boundary in the Upper Midwest United States. Taking a Bayesian hierarchical modelling approach, we find that plant WUE increased by ~13-25% over the course of the 20th century, but on average, tree-ring growth increments do not significantly increase. Consistent with higher WUE under increased CO2 and recent wetting, we observe a decrease in sensitivity of tree growth to annual precipitation, leading to 25-65% higher growth under dry conditions compared to trees of similar age and size in the past. However, an emerging interaction between summer maximum temperatures and annual precipitation diminishes the water-savings benefit under hot and dry conditions. Both the decrease in precipitation sensitivity, and the interaction between temperature and precipitation are strongest in open canopy microclimates, suggesting that stand structure may modulate response to future changes. Overall, we find that while higher WUE may provide some water savings benefits to growth under normal drought conditions, near-term future temperature increases combined with drought events could drive growth declines of over 50%. These products are used in the manucript, Heilman et al., 2020, Increased water use efficiency leads to decreased precipitation sensitivity of tree growth, but is offset by high temperatures. Submitted for review. The tree rings in this data package and those in msb-paleon packages 35-38 and 40-43 correspond with the isotope data in msb-paleon package 34. This material is based upon work supported by the National Science Foundation Doctoral Dissertation Improvement Grant no. DEB-1701897, the National Science Foundation PalEON MacroSystems Biology under grant no. DEB-1241874, and University of Notre Dame Center for Environmental Science and Technology (CEST)/Bayer Predoctoral Fellowship.
DOI: 10.15468/zk8w8q
title: The advertisement call of Leptobrachella liui Fei and Ye, 1990 (Anura: Megophryidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ding, Guo-Hua, Chen, Zhi-Qiang, Tang, Yun, Lin, Zhi-Hua (2019): The advertisement call of Leptobrachella liui Fei and Ye, 1990 (Anura: Megophryidae). Zootaxa 4576 (3): 588-590, DOI: https://doi.org/10.11646/zootaxa.4576.3.11
DOI: 10.15468/g33vqn
title: Resurrection of an East African house bat species Scotophilus altilis Allen, 1914 (Chiroptera: Vespertilionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vallo, Peter, Reeder, Deeann M., Vodzak, Megan E., Benda, Petr (2019): Resurrection of an East African house bat species Scotophilus altilis Allen, 1914 (Chiroptera: Vespertilionidae). Zootaxa 4577 (1): 148-160, DOI: https://doi.org/10.11646/zootaxa.4577.1.9
DOI: 10.15468/q7bfbb
title: Morphological descriptions of the larval and first juvenile stages of the decorator crab Camposcia retusa (Latreille, 1829) from laboratory-reared material

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xu, Tian, Zeng, Chaoshu, Hutson, Kate S. (2019): Morphological descriptions of the larval and first juvenile stages of the decorator crab Camposcia retusa (Latreille, 1829) from laboratory-reared material. Zootaxa 4577 (2): 295-315, DOI: https://doi.org/10.11646/zootaxa.4577.2.4
DOI: 10.15468/pv62xj
title: Galathea nasimae, new name for Galathea keijii Tirmizi & Javed, 1993, preoccupied by Galathea keijii Karasawa, 1993 (Decapoda: Anomura: Galatheidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Karasawa, Hiroaki (2019): Galathea nasimae, new name for Galathea keijii Tirmizi & Javed, 1993, preoccupied by Galathea keijii Karasawa, 1993 (Decapoda: Anomura: Galatheidae). Zootaxa 4590 (2): 296, DOI: https://doi.org/10.11646/zootaxa.4590.2.7
DOI: 10.15468/agfxws
title: Discovery of the genus Micropeneta Pic in China, with description of a new species (Coleoptera: Tenebrionidae: Gnathidiini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Bo-Yan, Jiang, Ri-Xin (2019): Discovery of the genus Micropeneta Pic in China, with description of a new species (Coleoptera: Tenebrionidae: Gnathidiini). Zootaxa 4608 (1): 196-200, DOI: https://doi.org/10.11646/zootaxa.4608.1.14
DOI: 10.15468/cew6xp
title: Defining new dung beetle tribes to resolve discrepancies between phylogeny and tribal classification in the subfamily Scarabaeinae (Coleoptera: Scarabaeidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Davis, Adrian L. V., Deschodt, Christian M., Scholtz, Clarke H. (2019): Defining new dung beetle tribes to resolve discrepancies between phylogeny and tribal classification in the subfamily Scarabaeinae (Coleoptera: Scarabaeidae). Zootaxa 4608 (1): 131-144, DOI: https://doi.org/10.11646/zootaxa.4608.1.7
DOI: 10.25573/data.12808601.v1
title: (mg) No 3. Assembly & Annotations (metagenomes) Output

description: The complete output of the Snakemake workflow describe in the reference linked below. Zipped directories contain the outputs of each step from the workflow. Please note that some information contained in the contigs.db and profile.db were added in subsequent workflows. <br><b>00_RAW</b>/: Raw fastq files before trimming.<b>00_LOGS</b>/: Individual log files for each step of the snakemake workflow.<b>00_TRIMMED</b>/: Eight trimmed, compressed fastq files for each sample.<b>01_QC</b>/: Merged forward (R1) & reverse (R2) QC'ed fastq files. QC STATS file for each sample. `qc-report.txt` file, a summary table of all QC results.<b>02_FASTA</b>/: A contig fasta file and reformat report for each assembly.<b>03_CONTIGS</b>/: An annotated contig database for each assembly.<b>04_MAPPING</b>/: Short read BAM files.<b>05_ANVIO_PROFILE</b>/: Individual profile database for each sample.<b>06_MERGED</b>/: Single merged profile database.<br><br>
DOI: 10.5281/zenodo.3725619
title: Research data archive of the sperical shock experiment with Chelyabinsk meteorite

description: This archive contains files with research data supplement to a publication "Experimental constrains on the mechanism and the amount of spectral shock darkening in ordinary chondrite materials during asteroid collisions" by Kohout et al. The experiment and material description and sample / zone numbering is consistent with the publication. Content: Chelyabinsk X-ray MicrtoTomography (XMT) dataset of half-sphere and steel jacket cropped. EMPA + Raman results.xlsx - data file with results of Electron Microprobe Analysis (EMPA) and Raman Spectroscopy EMPA BSE images.zip - archive with EMPA Back Scaterred Electrons (BSE) images and locations of EMPA points Full-sized version of the figures in the manuscript Reflectance UV-VIS-NIR-MIR all data.xlsx - data file with reflectance measurements XRD.zip - data file with X-ray diffraction measurement Zone IV SEM BSE images.zip - archive with high-resolution Scanning Electron Microscope (SEM) BSE images of the zone IV Zone IV SEM EDS element profiles and maps.zip - archive with SEM Energy Dispersive Spectroscopy (EDS) element profiles and maps (in detector counts) of the needle olivine crystals in the zone IV
DOI: 10.5281/zenodo.3584942
title: Research data archive of the sperical shock experiment with Chelyabinsk meteorite

description: This archive contains files with research data supplement to a publication "Experimental constrains on the mechanism and the amount of spectral shock darkening in ordinary chondrite materials during asteroid collisions" by Kohout et al. The experiment and material description and sample / zone numbering is consistent with the publication. Content: Chelyabinsk X-ray MicrtoTomography (XMT) dataset of half-sphere and steel jacket cropped. EMPA + Raman results.xlsx - data file with results of Electron Microprobe Analysis (EMPA) and Raman Spectroscopy EMPA BSE images.zip - archive with EMPA Back Scaterred Electrons (BSE) images and locations of EMPA points Full-sized version of the figures in the manuscript Reflectance UV-VIS-NIR-MIR all data.xlsx - data file with reflectance measurements XRD.zip - data file with X-ray diffraction measurement Zone IV SEM BSE images.zip - archive with high-resolution Scanning Electron Microscope (SEM) BSE images of the zone IV Zone IV SEM EDS element profiles and maps.zip - archive with SEM Energy Dispersive Spectroscopy (EDS) element profiles and maps (in detector counts) of the needle olivine crystals in the zone IV
DOI: 10.5517/ccdc.csd.cc24bwcr
title: CCDC 1976664: Experimental Crystal Structure Determination

description: Related Article: Meng-Yue Wang, Xue-Qing Zhu, Xing-Long Zhang, Rui-Li Guo, Qiong Jia, Yong-Qiang Wang|2020|Org.Biomol.Chem.|18|5918|doi:10.1039/D0OB01160F
DOI: 10.25810/kpdh-9n38
title: CMIP5 Zonal Velocity Sections Along 93°W (3°S–3°N, 0–500 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.5281/zenodo.3993667
title: Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function

description: Two Supplemental figures for manuscript: "<strong>Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function"</strong>
DOI: 10.5281/zenodo.3991616
title: Data deposition

description: Data deposition files
DOI: 10.5281/zenodo.3991615
title: Data deposition

description: Data deposition files
DOI: 10.25810/bpbb-h440
title: CMIP6 Zonal Velocity Sections Along 93°W (3°S–3°N, 0–500 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.