cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4756772
title: Assemblages of flower-visiting insects in clear-cuts are rich and dynamic

description: Clear-cuts in production forests provide an open, sunny environment, with an abundance of nectar, as well as exposed soil and woody debris. This makes them a potential habitat for several groups of insects that typically use open habitats like grassland, including those species that visit flowers. In the current study, we used colour pan traps to catch flower-visiting species. Study sites were selected according to age (2-8 yrs since clear-cut) and land-use history (forest or meadow 150 yrs ago). We caught and identified solitary bees (395 specimens belonging to 59 species), social bees (831/16), other Hymenoptera (367/66), Syrphidae (256/31), and beetles (Lepturinae & Cetoniinae; 11,409/12). Age of the clear-cut strongly affected species composition as well as several of the groups and species, with most species caught mainly in the younger clear-cuts. Flower abundance statistically affected several groups and species, but such effects are potentially suspect due to the flower-richness bias in pan trap catches. Bare soil and woody debris seemed irrelevant were important for the insect assemblage sampled, while bare rock sometimes positively affected flower-visiting insectswas not. Although the majority of the insects caught were forest species, about one third of the species were associated with open, agricultural sites and hence seem to be able to locate and exploit resources in clear-cuts.
description: Article DOI: 10.14411/eje.2021.019
DOI: 10.5281/zenodo.4756771
title: Assemblages of flower-visiting insects in clear-cuts are rich and dynamic

description: Clear-cuts in production forests provide an open, sunny environment, with an abundance of nectar, as well as exposed soil and woody debris. This makes them a potential habitat for several groups of insects that typically use open habitats like grassland, including those species that visit flowers. In the current study, we used colour pan traps to catch flower-visiting species. Study sites were selected according to age (2-8 yrs since clear-cut) and land-use history (forest or meadow 150 yrs ago). We caught and identified solitary bees (395 specimens belonging to 59 species), social bees (831/16), other Hymenoptera (367/66), Syrphidae (256/31), and beetles (Lepturinae & Cetoniinae; 11,409/12). Age of the clear-cut strongly affected species composition as well as several of the groups and species, with most species caught mainly in the younger clear-cuts. Flower abundance statistically affected several groups and species, but such effects are potentially suspect due to the flower-richness bias in pan trap catches. Bare soil and woody debris seemed irrelevant were important for the insect assemblage sampled, while bare rock sometimes positively affected flower-visiting insectswas not. Although the majority of the insects caught were forest species, about one third of the species were associated with open, agricultural sites and hence seem to be able to locate and exploit resources in clear-cuts.
description: Article DOI: 10.14411/eje.2021.019
DOI: 10.5066/p9k1zgr0
title: Net coal thickness in the southern Piceance Basin, Colorado (ps*thkg)

description: These are shapefiles and ARC/INFO polygon coverages showing the isopachs of total net coal in beds greater than or equal to 1 ft thick for the Cameo/Fairfield coal group and for the Cameo/Wheeler, South Canyon, and Coal Ridge coal zones, southern Piceance Basin coal assessment area. Also included are isopachs of total net coal in beds 1-2.3 ft thick, 2.3-3.5, 3.5-7.0, and 7.0-14, and greater than 14 ft thick in the Cameo/Wheeler coal zone.
DOI: 10.5066/p99zhzdv
title: National Assessment of Oil and Gas Project - Eastern Oregon-Washington Province (005) Total Petroleum Systems

description: The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources. The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).
DOI: 10.5281/zenodo.5015062
title: Pull Request Review Comments Dataset

description: <strong>Pull Request Review Comments (PRRC) Datasets</strong> Two datasets have been created from the gharchive website. The Pull Request Review Comment Event was selected from the set of available GitHub events. This dataset has been created for CARA: Chatbot for Automating Repairnator Actions as part of a master's thesis at KTH, Stockholm. First, a source dataset was downloaded from gharchive. That dataset ranges from January 2015 to December 2020. It consisted of 54,021,838 PRRCs and is over 18 Gigabytes in size. It took over 120 hours to download all the data files and extract PRRC from it. From this source dataset, two subsets were derived: Pull Request Review Comments Dataset: This is the dataset of the comments from the latest100,000 threads in the source dataset from gharchive. Pull Request Review Threads Dataset: This is the dataset of comments that were concatenated together if they were from the same thread (in chronological order). <strong>Description</strong> The dataset is stored in the JSONLines format, as was the source dataset from gharchive. For PRRC events, the source dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. `comment_id` is the field which specifies the ID GitHub uses for that comment. `commit_id` is the field which specifies the ID of the commit proposed in the pull request. `url` is the field which specifies the url to the comment in a pull request thread. `author` is the field which lists the username of the author of the pull request. `created_at` is the field which specifies the time at which the pull request comment was created. `body` is the field which describes the contents of the PRRC. The threads dataset contains the fields `url` and `body` which contain similar information as described above. However, the body field differs: it is a concatenation of all the PRRCs in a pull request thread. The comments dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. They are the same fields from the initial dataset. <strong>Construction</strong> We used the fasttext model published by Facebook to detect the language of the PRRC. Only those PRRCs in English were preserved. We also removed any PRRC or thread whose size exceeded 128 Kilobytes.
DOI: 10.5281/zenodo.4773067
title: Pull Request Review Comments Dataset

description: <strong>Pull Request Review Comments (PRRC) Datasets</strong> Two datasets have been created from the gharchive website. The Pull Request Review Comment Event was selected from the set of available GitHub events. This dataset has been created for CARA: Chatbot for Automating Repairnator Actions as part of a master's thesis at KTH, Stockholm. First, a source dataset was downloaded from gharchive. That dataset ranges from January 2015 to December 2020. It consisted of 54,021,838 PRRCs and is over 18 Gigabytes in size. It took over 120 hours to download all the data files and extract PRRC from it. From this source dataset, two subsets were derived: Pull Request Review Comments Dataset: This is the dataset of the comments from the latest100,000 threads in the source dataset from gharchive. Pull Request Review Threads Dataset: This is the dataset of comments that were concatenated together if they were from the same thread (in chronological order). <strong>Description</strong> The dataset is stored in the JSONLines format, as was the source dataset from gharchive. For PRRC events, the source dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. `comment_id` is the field which specifies the ID GitHub uses for that comment. `commit_id` is the field which specifies the ID of the commit proposed in the pull request. `url` is the field which specifies the url to the comment in a pull request thread. `author` is the field which lists the username of the author of the pull request. `created_at` is the field which specifies the time at which the pull request comment was created. `body` is the field which describes the contents of the PRRC. The threads dataset contains the fields `url` and `body` which contain similar information as described above. However, the body field differs: it is a concatenation of all the PRRCs in a pull request thread. The comments dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. They are the same fields from the initial dataset. <strong>Construction</strong> We used the fasttext model published by Facebook to detect the language of the PRRC. Only those PRRCs in English were preserved. We also removed any PRRC or thread whose size exceeded 128 Kilobytes.
DOI: 10.5066/p9a8qewi
title: National Assessment of Oil and Gas Project - Appalachian Basin Province (067) Total Petroleum Systems

description: The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources. The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).
DOI: 10.5066/p9adzyqe
title: Pesticides in Weekly Water Samples from the NAWQA California Regional Stream Quality Assessment (2017)

description: Dissolved pesticides were measured in weekly water samples from 85 wadeable streams in Central Coastal California over a variable six-week period during March-May, 2017, as part of the California Stream Quality Assessment (CSQA) study conducted by the U.S. Geological Survey's (USGS) Regional Stream-Quality Assessment (RSQA) Project. The 85 streams consisted of 40 urban sites (5-100percent urban land in the lower basin), 9 agricultural sites, 24 mixed land-use sites, and 12 undeveloped sites. Water samples were filtered (0.7 micrometers) and analyzed for 253 pesticide compounds by direct-injection liquid chromatography with tandem mass-spectrometry (LC-MS/MS). Two similar LC-MS/MS methods were used: a broad-spectrum (223 compounds) method in use since 2012 and a newly developed method for 30 new-generation fungicides and diamide and neonicotinoid insecticides. This Data Release provides sampling-site locations, analyte information, concentration data for pesticide compounds in environmental weekly water samples, quality-control data for the new method (to supplement previously published quality control data for the standard method), aquatic-life benchmark and Pesticide Toxicity Index toxicity concentration values that were used to assess potential toxicity, estimates of agricultural and nonagricultural pesticide-use data, and streamflow data for gaged sites, in support of the journal article, "New-generation pesticides are prevalent in California" Central Coast streams," by Sandstrom, M.W., Nowell, L.H., Mahler, B.J., and Van Metre, P.C.
DOI: 10.5281/zenodo.5015118
title: Dataset HD-tDCS

description: This registry contains raw data regarding baseline and endpoint assessments of patients with COVID-19 in hospitals and in the ICU.
DOI: 10.6084/m9.figshare.14680806
title: Complied data for Acoustic responses to call playbacks of the big brown bat (Eptesicus fuscus) and the evening bat (Nycticeius humeralis) in North Carolina, United States

description: Data was collected via the Avisoft ultrasonic microphone. Sonabat and manual visual identification were used to process acoustic recordings.<br>
DOI: 10.6084/m9.figshare.14680806.v1
title: Complied data for Acoustic responses to call playbacks of the big brown bat (Eptesicus fuscus) and the evening bat (Nycticeius humeralis) in North Carolina, United States

description: Data was collected via the Avisoft ultrasonic microphone. Sonabat and manual visual identification were used to process acoustic recordings.<br>
DOI: 10.25345/c5vn7g
title: MassIVE MSV000087685 - GNPS - Bacteroides thetaiotaomicron and burger ingredients
title: Culture of Bacteroides thetaiotaomicron VPI-5482 NCBI:txid818 (Zengler Lab UCSD) in PSB enriched with burger ingredient extracts. Culture performed under anaerobic conditions followed by SPE C18 extraction for LC-MS/MS.Data was acquired in positive ion mode
DOI: 10.6084/m9.figshare.12743687
title: Balancing selection maintains ancient polymorphisms at conserved enhancers for the olfactory receptor genes of a Chinese marine fish

description: These files consist of -a) Supplementary figs. S2, S3, S4 and S12 <br>b) Supplementary tables S1-S29, S3, S5, S11, S18 and S19.<br>
DOI: 10.6084/m9.figshare.12743687.v12
title: Balancing selection maintains ancient polymorphisms at conserved enhancers for the olfactory receptor genes of a Chinese marine fish

description: These files consist of -a) Supplementary figs. S2, S3, S4 and S12 <br>b) Supplementary tables S1-S29, S3, S5, S11, S18 and S19.<br>
DOI: 10.6084/m9.figshare.12743687.v11
title: Balancing selection maintains ancient polymorphisms at conserved enhancers for the olfactory receptor genes of a Chinese marine fish

description: These files consist of -a) Supplementary figs. S2, S3, S4 and S12 <br>b) Supplementary tables S1-S29, S3, S5, S11, S18 and S19.<br>
DOI: 10.23641/asha.14782092
title: Speech movement variability in people who stutter (Wiltshire et al., 2021)

description: <b>Purpose: </b>People who stutter (PWS) have more unstable speech motor systems than people who are typically fluent (PWTF). Here, we used real-time magnetic resonance imaging (MRI) of the vocal tract to assess variability and duration of movements of different articulators in PWS and PWTF during fluent speech production.<b>Method: </b>The vocal tracts of 28 adults with moderate to severe stuttering and 20 PWTF were scanned using MRI while repeating simple and complex pseudowords. Midsagittal images of the vocal tract from lips to larynx were reconstructed at 33.3 frames per second. For each participant, we measured the variability and duration of movements across multiple repetitions of the pseudowords in three selected articulators: the lips, tongue body, and velum.<b>Results: </b>PWS showed significantly greater speech movement variability than PWTF during fluent repetitions of pseudowords. The group difference was most evident for measurements of lip aperture using these stimuli, as reported previously, but here, we report that movements of the tongue body and velum were also affected during the same utterances. Variability was not affected by phonological complexity. Speech movement variability was unrelated to stuttering severity within the PWS group. PWS also showed longer speech movement durations relative to PWTF for fluent repetitions of multisyllabic pseudowords, and this group difference was even more evident as complexity increased.<b>Conclusions: </b>Using real-time MRI of the vocal tract, we found that PWS produced more variable movements than PWTF even during fluent productions of simple pseudowords. PWS also took longer to produce multisyllabic words relative to PWTF, particularly when words were more complex. This indicates general, trait-level differences in the control of the articulators between PWS and PWTF.<br><b>Supplemental Material S1.</b> Effect of word length on variability. <br><b>Supplemental Material S2. </b>Effect of phonological complexity on variability. <br><b>Supplemental Material S3. </b>Effect of word length on duration.<br><b>Supplemental Material S4. </b>Effect of phonological complexity on duration.<br>Wiltshire, C. E. E., Chiew, M., Chesters, J., Healy, M. P., & Watkins, K. E. (2021). Speech movement variability in people who stutter: A vocal tract magnetic resonance imaging study. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00507
DOI: 10.23641/asha.14782092.v1
title: Speech movement variability in people who stutter (Wiltshire et al., 2021)

description: <b>Purpose: </b>People who stutter (PWS) have more unstable speech motor systems than people who are typically fluent (PWTF). Here, we used real-time magnetic resonance imaging (MRI) of the vocal tract to assess variability and duration of movements of different articulators in PWS and PWTF during fluent speech production.<b>Method: </b>The vocal tracts of 28 adults with moderate to severe stuttering and 20 PWTF were scanned using MRI while repeating simple and complex pseudowords. Midsagittal images of the vocal tract from lips to larynx were reconstructed at 33.3 frames per second. For each participant, we measured the variability and duration of movements across multiple repetitions of the pseudowords in three selected articulators: the lips, tongue body, and velum.<b>Results: </b>PWS showed significantly greater speech movement variability than PWTF during fluent repetitions of pseudowords. The group difference was most evident for measurements of lip aperture using these stimuli, as reported previously, but here, we report that movements of the tongue body and velum were also affected during the same utterances. Variability was not affected by phonological complexity. Speech movement variability was unrelated to stuttering severity within the PWS group. PWS also showed longer speech movement durations relative to PWTF for fluent repetitions of multisyllabic pseudowords, and this group difference was even more evident as complexity increased.<b>Conclusions: </b>Using real-time MRI of the vocal tract, we found that PWS produced more variable movements than PWTF even during fluent productions of simple pseudowords. PWS also took longer to produce multisyllabic words relative to PWTF, particularly when words were more complex. This indicates general, trait-level differences in the control of the articulators between PWS and PWTF.<br><b>Supplemental Material S1.</b> Effect of word length on variability. <br><b>Supplemental Material S2. </b>Effect of phonological complexity on variability. <br><b>Supplemental Material S3. </b>Effect of word length on duration.<br><b>Supplemental Material S4. </b>Effect of phonological complexity on duration.<br>Wiltshire, C. E. E., Chiew, M., Chesters, J., Healy, M. P., & Watkins, K. E. (2021). Speech movement variability in people who stutter: A vocal tract magnetic resonance imaging study. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00507
DOI: 10.23641/asha.14810484
title: SES and grammatical measures (Weiler et al., 2021)

description: <b>Purpose: </b>The purpose of this study was to evaluate the relative contribution of socioeconomic status (SES) on three grammatical measures—finite verb morphology composite (FVMC), percent grammatical utterances (PGU), and clausal density—in children between the ages of 4 and 9 years.<b>Method: </b>Data for this study were from the normative sample in the Edmonton Narrative Norms Instrument. For 359 children, hierarchical linear regression was performed to evaluate the amount of variance in FVMC, PGU, and clausal density that was uniquely explained by SES after accounting for child chronological age and language status (typical, impaired).<b>Results: </b>After child age and language status were controlled, SES was a significant predictor of PGU and clausal density scores, but not of FVMC scores. SES uniquely accounted for 0.5% of variance in PGU scores and 0.8% of variance in clausal density scores.<b>Conclusions: </b>Consistent with maturational accounts of children’s development of tense markers, results of this study offer evidence that, among grammatical measures, FVMC is uniquely robust to variation in SES. Although significant, the variance of PGU and clausal density scores uniquely accounted for by SES was close to minimum. Clinicians can therefore include these three grammatical measures for assessing children of different socioeconomic backgrounds.<br><b>Supplemental Material S1.</b> Mean (standard deviation) of demographic measures of children by language status and age.<br><b>Supplemental Material S2.</b> Mean (standard deviation) of grammatical measures by language status and age (<i>N</i> = 359). <br>Weiler, B., Schneider, P., & Guo, L.-Y. (2021). The contribution of socioeconomic status to children's performance on three grammatical measures in the Edmonton Narrative Norms Instrument.<i> Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00576
DOI: 10.23641/asha.14810484.v1
title: SES and grammatical measures (Weiler et al., 2021)

description: <b>Purpose: </b>The purpose of this study was to evaluate the relative contribution of socioeconomic status (SES) on three grammatical measures—finite verb morphology composite (FVMC), percent grammatical utterances (PGU), and clausal density—in children between the ages of 4 and 9 years.<b>Method: </b>Data for this study were from the normative sample in the Edmonton Narrative Norms Instrument. For 359 children, hierarchical linear regression was performed to evaluate the amount of variance in FVMC, PGU, and clausal density that was uniquely explained by SES after accounting for child chronological age and language status (typical, impaired).<b>Results: </b>After child age and language status were controlled, SES was a significant predictor of PGU and clausal density scores, but not of FVMC scores. SES uniquely accounted for 0.5% of variance in PGU scores and 0.8% of variance in clausal density scores.<b>Conclusions: </b>Consistent with maturational accounts of children’s development of tense markers, results of this study offer evidence that, among grammatical measures, FVMC is uniquely robust to variation in SES. Although significant, the variance of PGU and clausal density scores uniquely accounted for by SES was close to minimum. Clinicians can therefore include these three grammatical measures for assessing children of different socioeconomic backgrounds.<br><b>Supplemental Material S1.</b> Mean (standard deviation) of demographic measures of children by language status and age.<br><b>Supplemental Material S2.</b> Mean (standard deviation) of grammatical measures by language status and age (<i>N</i> = 359). <br>Weiler, B., Schneider, P., & Guo, L.-Y. (2021). The contribution of socioeconomic status to children's performance on three grammatical measures in the Edmonton Narrative Norms Instrument.<i> Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00576
DOI: 10.6084/m9.figshare.3761562.v1897
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.