cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26180461.v1
title: Code used in the study - "<b>Canopy height and biomass distribution across the forests of Iberian Peninsula</b> "

description: This is the initial version of the data and code used in the paper, "<b>Canopy height and biomass distribution across the forests of Iberian Peninsula</b>".<b>Authors</b>Yang Su <sup>a, b, c</sup>, Martin Schwartz <sup>b</sup>, Ibrahim Fayad <sup>b</sup>, García Alonso Mariano <sup>d</sup>, Miguel A. Zavala <sup>e</sup>, Julián Tijerín-Triviño <sup>e</sup>, Julen Astigarraga <sup>e</sup>, Verónica Cruz <sup>f</sup>, Siyu Liu <sup>g</sup>, Xianglin Zhang <sup>c, h</sup>, Songchao Chen <sup>h,i</sup>, François Ritter <sup>b</sup>, Nikola Besic <sup>j</sup>, Alexandre d'Aspremont <sup>a</sup>, Philippe Ciais <sup>b</sup><br><b>Affiliations</b><sup>a</sup> Département d'Informatique, École Normale Supérieure – PSL, 45 Rue d'Ulm, 75005 Paris, France<sup>b</sup> Laboratoire des Sciences du Climat et de l’Environnement, CEA CNRS UVSQ Orme des Merisiers, 91190 Gif-sur-Yvette, France<sup>c </sup>UMR ECOSYS, INRAE AgroParisTech, Université Paris-Saclay, 91120 Palaiseau, France<sup>d</sup> University of Alcalá, Department of Geology, Geography and the Environment, Enviromental Remote Sensing Research Group, 28801 Alcalá de Henares, Spain<sup>e</sup> University of Alcalá, Department of Life Sciences, 28801 Alcalá de Henares, Spain<sup>f</sup> Department of Biodiversity, Ecology and Evolution, Complutense University of Madrid, 28040 Madrid, Spain<sup>g</sup> Department of Geosciences and Natural Resource Management, Copenhagen University, 1958 Frederiksberg, Denmark<sup>h</sup> College of Environmental and Resource Sciences, Zhejiang University, 310058 Hangzhou, China<sup>i </sup>ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, 311215 Hangzhou, China<sup>j </sup>IGN, ENSG, Laboratoire d'inventaire forestier (LIF), 54000 Nancy, France<br><b>Corresponding Author</b>Yang Suyang.su@ens.fr+33 1 89 10 07 67École normale supérieure - PSL<br>To use the model and data, please contact the correspondin author for more details.<br>The maps of canopy height and above-ground biomass provided by this study can be found on GEE, detailed information about how to access those datasets can be found in Table 2 in this study. A preview of those maps can be found here: https://ens-yangsu-forest-spain-als.projects.earthengine.app/view/ai4forest-iberian-peninsula
DOI: 10.17866/rd.salford.21220835.v1
title: Facial Expression Image Dataset for Computer Vision Algorithms

description: The dataset for this project is characterised by photos of individual human emotion expression and these photos are taken with the help of both digital camera and a mobile phone camera from different angles, posture, background, light exposure, and distances. This task might look and sound very easy but there were some challenges encountered along the process which are reviewed below:
1) People constraint
One of the major challenges faced during this project is getting people to participate in the image capturing process as school was on vacation, and other individuals gotten around the environment were not willing to let their images be captured for personal and security reasons even after explaining the notion behind the project which is mainly for academic research purposes. Due to this challenge, we resorted to capturing the images of the researcher and just a few other willing individuals.
2) Time constraint
As with all deep learning projects, the more data available the more accuracy and less error the result will produce. At the initial stage of the project, it was agreed to have 10 emotional expression photos each of at least 50 persons and we can increase the number of photos for more accurate results but due to the constraint in time of this project an agreement was later made to just capture the researcher and a few other people that are willing and available. These photos were taken for just two types of human emotion expression that is, “happy” and “sad” faces due to time constraint too. To expand our work further on this project (as future works and recommendations), photos of other facial expression such as anger, contempt, disgust, fright, and surprise can be included if time permits.
3) The approved facial emotions capture.
It was agreed to capture as many angles and posture of just two facial emotions for this project with at least 10 images emotional expression per individual, but due to time and people constraints few persons were captured with as many postures as possible for this project which is stated below:
Ø Happy faces: 65 images
Ø Sad faces: 62 images
There are many other types of facial emotions and again to expand our project in the future, we can include all the other types of the facial emotions if time permits, and people are readily available.
4) Expand Further.
This project can be improved furthermore with so many abilities, again due to the limitation of time given to this project, these improvements can be implemented later as future works. In simple words, this project is to detect/predict real-time human emotion which involves creating a model that can detect the percentage confidence of any happy or sad facial image. The higher the percentage confidence the more accurate the facial fed into the model.
5) Other Questions
Can the model be reproducible? the supposed response to this question should be YES. If and only if the model will be fed with the proper data (images) such as images of other types of emotional expression.
DOI: 10.6084/m9.figshare.19728043.v1
title: Additional file 1 of Comparative 3D genome architecture in vertebrates

description: Additional file 1: Table S1. Sample information and data quality. Table S2. Hi-C data mapping and filtering. Table S3. Insert size distribution of cis contacts. Table S4. Resolution of 31 cell lines. Table S5. Correlations between AB index and TE coverage.
DOI: 10.6084/m9.figshare.4887314.v1
title: Concussion-RawData-2017

description: Dataset looking at the diagnostic accuracy of a a tablet-based software for concussion.
DOI: 10.6084/m9.figshare.24807456.v2
title: China Climate Change News Indices

description: Using nearly 4.9 million news articles published by nine Chinese newspapers (People's Daily, Guangming Daily, Xinhua Daily Telegraph, China News Service, Science and Technology Daily, Science Times, China Energy News, China Environment News and Global Times) from 2010 to 2022, we constructed five types of climate change news indices with different topics, namely natural disasters, climate governance, energy transition, climate cooperation and climate communication. Daily frequency indices are provided.Cite: Ma, D., Zhang, Y., Ji, Q., Zhao, W. L., & Zhai, P. (2024). Heterogeneous impacts of climate change news on China's financial markets. <i>International Review of Financial Analysis</i>, <i>91</i>, 103007.
DOI: 10.6084/m9.figshare.20086034.v1
title: Crash Dataset Supplementary Material.xlsx

description: Automobile crash dataset: The automobile is a uni-body B-segment small family car of hatchback type. The responses are obtained from finite element simulations of the automobile in full-frontal crash against a rigid barrier. Since the simulation details cannot be shared completely, the quantities are camouflaged into variables (x1, x2,...) and responses (y1, y2,...) henceforth. The input variables are comprised of section shapes, thicknesses and material properties of front-end structural components which are made of sheet metal. A total of 30 variables: 16 continuous and 14 categorical are considered.
DOI: 10.6084/m9.figshare.23802972.v1
title: Supplementary Material for: Atezolizumab in combination with bevacizumab for the management of patients with hepatocellular cancer in the first-line setting: systematic literature review and meta-analysis

description: Background & aims: The objective of this systematic literature review (SLR) and network meta-analysis (NMA) is to compare randomised controlled trial evidence for atezolizumab-bevacizumab with globally relevant pharmacological comparators for first-line treatment of patients with unresectable hepatocellular carcinoma (HCC). Methods: Randomised controlled trials investigating first-line treatment of HCC in adults with no prior systemic treatment were eligible for inclusion into the SLR and were retrieved from Embase, MEDLINE, and Evidence Based Medicine (EBM) Reviews. Interventions of interest for the NMA included atezolizumab-bevacizumab, sorafenib, lenvatinib, durvalumab (including in combination with tremelimumab), cabozantinib (including in combination with atezolizumab), camrelizumab (including in combination with rivoceranib), pembrolizumab (including in combination with lenvatinib) and tislelizumab. Random effects NMA was conducted for survival endpoints within a Bayesian framework with an informative prior distribution for between study heterogeneity. The hazard ratios for relative treatment effect were estimated with 95% credible intervals (CrIs). Results: The SLR identified 49 studies, of which eight formed a connected evidence network permitting the indirect treatment comparison of atezolizumab-bevacizumab with comparators of interest. The indirect comparisons suggested an improved overall survival (OS) with atezolizumab-bevacizumab versus most comparators. All indirect treatment comparison results for atezolizumab-bevacizumab included the null value within the 95% CrI (n=1) for OS and progression free survival (PFS). Conclusions: The results of the NMA indicate atezolizumab-bevacizumab is associated with superior or comparable OS and PFS together with a manageable safety profile compared with globally relevant comparators in the unresected HCC indication. The findings support that atezolizumab-bevacizumab remains standard of care for the management of first-line unresectable HCC patients.
DOI: 10.25402/epi.24321361.v1
title: Integrative CUT&Tag-RNA-Seq analysis of histone variant macroH2A1-dependent orchestration of human induced pluripotent stem cell reprogramming

description: Supplementary figures 1-5Supplementary tables 1-14
DOI: 10.6084/m9.figshare.1092617.v1
title: Sequence and functional annotation of T. amboinensis genes

description: This file set includes the protein and coding sequences of all T. amboinensis genes identified in the de novo transcriptome assembly, and the corresponding functional annotations.
DOI: 10.6084/m9.figshare.12966680.v4
title: Evaluation of color stability of two different posterior tooth colored restorative

description: The use of tooth-colored restorative materials has been on the rise in the recent times. Patient awareness and improvement in the properties of composite materials have led the clinicians to use these materials, even in the posterior regions. But strength and other properties like staining have remained as a challenge with the newer materials that are being introduced.Recently developed esthetic materials like Cention N and Solare Sculpt have been reported to have improved properties for use as posterior restorative material. One important aspect of esthetic restorative materials is color.<br>Thus the aim of this <i>in vitro</i> study was to evaluate the color stability of esthetic restorative materials (Cention N, Solare Sculpt) after exposure to different staining solutions (coffee, green tea and Diet Coke).<br>
DOI: 10.6084/m9.figshare.26991382.v1
title: Additional file 6 of Transcriptional profiling of human cartilage endplate cells identifies novel genes and cell clusters underlying degenerated and non-degenerated phenotypes

description: Additional file 6: Table S9. Functional enrichment values and gene lists for Gene Ontology pathways, in progenitor cells.
DOI: 10.6084/m9.figshare.640023.v1
title: Genetic algorithm scripts

description: Script 1: genetic algorithm for the N-Queens problem. Script 2: Genetic algorithm for the Rastrigin function optimization problem. Script 3: Nelder-Mead, Hill Climbing, and Random Search algorithms for the Rastrigin function optimization problem. Script 4: The vector class created to simplify the Nelder-Mead, Hill Climbing, and Random Search algorithms for the Rastrigin function optimization problem.
DOI: 10.6084/m9.figshare.24032064.v1
title: Result data

description: This contains result data to make the figures in the manuscript.
Each case folder corresponds to different atmospheric conditions of H2, CO, oxygen escape, and background temperature profile. In each case folder, the output folder has the density, rate, and flux data.
DOI: 10.6084/m9.figshare.23301770.v1
title: Supplementary Material for: Effects of acute caffeine intake on Insulin-like Growth Factor-1 responses to total sleep deprivation: interactions with COMT polymorphism, a randomized, cross over study

description: Abstract Introduction: Genes encoding catechol-O-methyl-transferase (COMT) and adenosine A2A receptor (ADORA2A) have been shown to influence cognitive performances and responses to caffeine intake during prolonged wakefulness. The rs4680 single nucleotide polymorphism (SNP) of COMT differentiates on memory score and circulating levels of the neurotrophic factor IGF-1. This study aimed to determine the kinetics of IGF-1, testosterone and cortisol concentrations during prolonged wakefulness under caffeine or placebo intake in 37 healthy participants, and to analyze whether the responses are dependent on COMT rs4680 or ADORA2A rs5751876 SNPs. Methods: In caffeine (2.5 mg/kg, twice over 24 hours) or placebo-controlled condition, blood sampling was performed at 1h (08:00, baseline), 11h, 13h, 25h (08:00 next day), 35h, and 37h of prolonged wakefulness, and at 08:00 after one night of recovery sleep, to assess hormonal concentrations. Genotyping was performed on blood cells. Results: Results indicated a significant increase in IGF-1 levels after 25, 35, and 37 hours of prolonged wakefulness in the placebo condition, in subjects carrying the homozygous COMT A/A genotype only (expressed in absolute values (± SEM): 118 ± 8, 121 ± 10 and 121 ± 10 versus 105 ± 7 ng/ml for A/A, 127 ± 11, 128 ± 12 and 129 ± 13 versus 120 ± 11 ng/ml for G/G, and 106 ± 9, 110 ± 10 and 106 ± 10 versus 101 ± 8 ng/ml for G/A, after 25, 35 and 37 h of wakefulness versus 1h; p&lt;0.05, condition X time X SNP). Acute caffeine intake exerted a COMT genotype-dependent reducing effect on IGF-1 kinetic response (104 ± 26, 107 ± 27 and 106 ± 26 versus 100 ± 25 ng/ml for A/A genotype, at 25, 35 and 37 h of wakefulness versus 1h; p&lt;0.05 condition X time X SNP), plus on resting levels after overnight recovery (102 ± 5 versus 113 ± 6 ng/ml) (p&lt;0.05, condition X SNP). Testosterone and cortisol concentrations decreased during wakefulness, and caffeine alleviated the testosterone reduction, unrelated to the COMT polymorphism. No significant main effect of the ADORA2A SNP was shown regardless of hormonal responses. Discussion/Conclusion: Our results indicated that the COMT polymorphism interaction is important in determining the IGF-1 neurotrophic response to sleep deprivation with caffeine intake. (NCT03859882).
DOI: 10.11583/dtu.22284514.v1
title: Dataset for "Neural Network Potentials for Accelerated Metadynamics of Oxygen Reduction Kinetics at Au-Water Interfaces".

description: This is the dataset for the paper "Neural Network Potentials for Accelerated Metadynamics of Oxygen Reduction Kinetics at Au-Water Interfaces". <br> This dataset contains 18773 Au-water interface structures with different number of hydroxyls and oxygens. <br> The format of this dataset is ASE (Atomic Simulation Environment) default trajectory file, which can be directly read by ASE python package.
DOI: 10.6084/m9.figshare.28829222.v1
title: Transcription factor enrichment analysis of CC-treated secretomes associated with ER beta.

description: Transcription factor enrichment analysis of CC-treated secretomes associated with ER beta.
DOI: 10.23645/epacomptox.28780757.v1
title: ToxValDB v9.6.1 DCAP

description: ToxValDB v9.6.1 DCAPData associated with manuscript "Estimation of database-calibrated toxicity values for human health assessment using existing toxicology data for over a thousand chemicals"Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.24657444.v4
title: Measured data at the Asang station on the southern slope of the central Himalayas during 2018–2019

description: Measured data at the Asang station on the southern slope of the central Himalayas during 2018–2019
DOI: 10.6084/m9.figshare.12277082.v1
title: Dataset for Paper - COVID-19-EMSE

description: Software categories and software bug categories for COVID-19 software repositories
DOI: 10.6084/m9.figshare.26363818.v2
title: Adolescent Suicidal Behavior dataset, Lohagara, Narail, 2024

description: A study was conducted in Lohagara, a rural area in southern Bangladesh's Narail district, with 350 participants. The researchers used stratified sampling to choose the subjects. Students from five classes were divided into three sections each, with each section containing fifty students in a school. One section from each class was first chosen through simple random sampling, and then two more sections were picked the same way. Data was collected using Bengali versions of the Suicidal Behavior-Revised Questionnaire (SBQ-R), the Depression, Anxiety, and Stress Scale - 21 Items (DASS-21), and another structured questionnaire.
DOI: 10.6084/m9.figshare.1598066.v1
title: file1

description: file1
DOI: 10.6084/m9.figshare.19499171.v1
title: patches and local annotations, slide 004, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.22698187.v1
title: Sugarcane mosaic virus reduced bacterial diversity and network complexity in the maize root endosphere (supporting information)

description: Aboveground biomass, relative expression of SCWV CP in leaves (b) after infection for three and nine days. The bacterial richness at phylum level in the rhizosphere and endosphere after infection for nine days
DOI: 10.6084/m9.figshare.24230848.v3
title: Regulation of pupil size in natural vision across the human lifespan – Supporting materials: Pre-processed data and laboratory log

description: The <b>merged_data_incl</b><b>.csv </b>&<b> </b><b>merged_data_incl.rda</b> files contain the pre-processed data (cleaned, corrected, quality checked and categorized) from the n=83 included participants in <i>csv </i>and <i>r</i><i>da (R data) format</i>, respectively. Note that in <i>rda </i>format the data classes are retained when loading the data into R, whereas in <i>csv </i>format they are not. The datasets comprise the data collected during the experiments and the data from the redcap survey, including demographic information and health status from the screening. This data correspond to the <b>merged_data_incl</b> dataframe, generated in the <b>30_datamerge.R </b>code (see folder <i>03_datamerge</i>) and uploaded in the GitHub code repository. The Code repository was published together with this FigShare repository and research article in the Royal Society Open Science journal. Please note that the complete and executable R code and data from before pre-processing are available here (https://github.com/tscnlab/LazarEtAl_RSocOpenSci_2024)<b>lablog_RSOS-191613.xlsx </b>contains the laboratory log file comprising metadata for all invited participants (<i>SP001</i>-<i>SP113</i>). The metadata includes the following variables:<i>Participant No. - n</i>umber of invited participants (ascending)ID - participant ID in the experiment (<i>SP001</i>-<i>SP113</i>)Status - status of the experiment data (<i>included</i>; <i>excluded before trial</i>, <i>excluded after trial</i>)Date - date of participation in the experimentStart Time [hh:mm] - start time of the study participation (screening) in hours and minutesAge [years] - age of the participant in yearsAge group - belonging to age group<br>
DOI: 10.6084/m9.figshare.7650155.v1
title: Primary data. Thiotrophic bacterial symbiont induces polyphenism in giant ciliate host Zoothamnium niveum

description: Here we study host dependence in the marine, giant colonial ciliate <i>Zoothamnium niveum</i> and its thiotrophic symbiont from an instable environment of degrading wood. We combine several experimental approaches to provide evidence for a sulphide-tolerant host with striking polyphenism involving two discrete morphs, a symbiotic and an aposymbiotic one. The two differ significantly in colony growth form and fitness. We provide evidence that the aposymbiotic morph is present in nature.Comprehensive report generated with RMarkdown, code provided in Rmd file. It can be visualized as pdf or as html. CSV files with raw data included. MD5 signatures provided in a txt file.<br><sub>MD5(zip file)= 8937099410275ddc0e495d96432b6d64</sub><br><br>
DOI: 10.17870/bathspa.13397138.v1
title: Coding the Contemplative Collective - Infínity - Journal of Media Practice Presentation Slides - 2017

description: Coding the Contemplative Collective investigates how aesthetic objectives related to contemplative practice might be embedded within the space of a mobile platform and how these objectives are shaped when authors from distinct domains (technology, business, and the arts) collaborate on a single artistic project. <br><br>The collection consists of the projects <i>$ echo </i>& <i>Infínity</i>, and the collaborative context for each project shaped the final artworks through managing the multiple perspectives on what constituted a suitable level and type of interactivity for a contemplative space.<br><br><b>This item contains slides from a presentation about the app from the Journal of Media Practice and Meccsa Practice Network Annual Symposium at Bath Spa</b> <b>University on 08.06.17. </b>
DOI: 10.6084/m9.figshare.13298006.v1
title: P1406

description: Reconstructed Micro-CT data-set; 14 day-old, lumbar spine segment, female C57BL/6 mouse
DOI: 10.6084/m9.figshare.14316678.v1
title: Antifungal susceptibility and distribution of Candida spp. isolates from the University Hospital in the municipality of Dourados, State of Mato Grosso do Sul, Brazil

description: Introduction Hospital infections caused by Candida spp. are a leading cause of morbidity and mortality in hospitalized patients, particularly those that are critically ill or immunocompromised. In this study, the distribution of Candida species in isolates from the University Hospital of the Federal University at Grande Dourados and their in vitro susceptibility to antifungal drugs were analyzed. Methods Yeasts were phenotypically identified using classical methodologies. Antifungal susceptibility tests to amphotericin B and fluconazole were performed using the broth microdilution technique. Results A total of 50 Candida isolates were obtained from hospitalized patients during the study period. We analyzed yeast isolates from urine (n=31; 62%), blood (n=12; 24%), and tracheal secretions (n=7; 14%). The following Candida species were identified: C. tropicalis (n=21; 42%), C. albicans (n=18; 36%), C. glabrata (n=10; 20%), and C. krusei (n=1; 2%). Antifungal susceptibility tests demonstrated that C. albicans was susceptible to both antifungal agents. However, 31.2% of the non-C. albicans Candida isolates displayed dose-dependent susceptibility to fluconazole, and 3.1% were resistant to amphotericin B. Conclusions In contrast to previous reports, our results indicated that C. tropicalis was the most commonly isolated yeast species among the hospital patients. The predominance of non-C. albicans Candida infections confirms the importance of species-level identification for implementing appropriate antifungal therapies.