cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/gv4-c94-gvn
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16909405.v1
title: Data set for the manuscript "A Decreasing Trend of Nitrous Oxide Emissions from California Cropland from 2000 to 2015".

description: Data set for the paper "A Decreasing Trend of Nitrous Oxide Emissions from California Cropland from 2000 to 2015".
DOI: 10.6084/m9.figshare.19093115.v3
title: STIs prevalence among young adults aged 18-24years in Mbeya-Tanzania

description: STI prevalence data for the study condycted among young adults, 18-24 year old, attending Higher Learning Institutions in Mbeya, Tanzania.
DOI: 10.6084/m9.figshare.6154199.v1
title: XW Data 2016-2017

description: Demographic, clinical and neuropsychological data of 49 PD patients and 51 healthy controls.<br>The data were collected at the Xuanwu Hospital between 2016-2017. <br>
DOI: 10.3535/4gc-0nd-srl
title: Dolostone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23949450.v2
title: Micro-CT images of a coal sample (COAL-2)

description: This is micro-CT scan of coal sample "COAL-2". Its PET scanning data is available in project "4D PET imaging of [<sup>11</sup>C]CO<sub>2</sub> flow dynamics in coal'.<br>
DOI: 10.6084/m9.figshare.9904793.v1
title: 16S_miTAGs_Sichert _et_al_2019

description: 16S miTAGs extracted from the TARA Oceans "Surface, Prokaryotic" and OSD2014 samples used in Sichert et al., 2019. Please got to https://github.com/mschecht/lentimonas_env_analysis for the analysis.
DOI: 10.3535/2t2-rpw-3dp
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t5a-dyc-vfk
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1300167.v1
title: S2_Dataset.xls

description: Matrix for FTIR spectra. (data)
DOI: 10.6084/m9.figshare.27216159.v1
title: Microarray data of EOPE&control plancenta

description: This is a subset of GSE14722 on Gene Expression Omnibus (GEO) database. The matrix contains microarray data of placental tissue from early onset preeclampsia (EOPE) and control pregnancies. Early onset preeclampsia (EOPE) was defined as onset of the disease before 34 weeks of gestation (between 20 and 34 completed gestational weeks). More details can be found on GEO.
DOI: 10.6084/m9.figshare.28187936.v1
title: Constructing a global human epidemic database using open-source digital biosurveillance

description: Here we present a subset of data from Ginkgo Biosecurity's Human Epidemic Database (HED), which consists of outbreak data collected from official, open-source surveillance reports. This provided dataset includes 1,044 epidemic events with onset between 2015 and 2020, covering more 230 countries and territories and 120 pathogens.

The methodology to collate these data have been described in a manuscript submitted for publication, ‘Constructing a global human epidemic database using open-source digital biosurveillance’.

Datasets included:
- HED_data repository.csv - Event-level data repository with epidemics starting in 2015 to 2020.
- HED_pathogens_supplement.csv - A list of pathogens and their associated grouping within our epidemic event scoring framework. This pathogen/grouping list is not comprehensive but rather a sampling of the pathogens scored.
- HED_metadata.csv - Meta data describing columns in ‘HED_complete data repository.csv’
DOI: 10.3535/3tf-pc4-xws
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xep-9h5-mw9
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25053644.v1
title: Data: Sex-specific growth and lifespan effects of germline removalin the dioecious nematode <i>Caenorhabditis remanei</i>

description: Data for: doi.org/10.1101/2023.12.07.570570Please see manuscript for detailed methods.<b>RNAi treatments</b><br>glp-1 = germline removal<br>control = green flourescent protein<b>Growth data</b><br>dev.time = development time until maturity (days)<br>d0.size = size at maturity (mm2)<br>d4.size = adult size at day 4 (mm2)<b>Lifespan mated</b><br>Kanamycin treatment - many plates were infected by unwanted bacteria and treated with the antibiotic Kanamycin. This also extended the lifespan of treated worms.
DOI: 10.3535/b7y-z72-7d7
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yzj-35t-tbk
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21407943.v2
title: Peritraumatic Stress Symptoms among COVID-19 Survivors in Iraq

description: the current study aims to explore peritraumatic stress symptoms among survivors of COVID-19 in Iraq. Moreover, group differences based on several variables and the associated factors with peritraumatic stress are also investigated.
DOI: 10.17632/r5sr3ryg83
title: Identification of pre-infection markers and differential plasma protein expression following SARS-CoV-2 infection in people living with HIV

description: Proteomic data for the article: "Identification of pre-infection markers and differential plasma protein expression following SARS-CoV-2 infection in people living with HIV". For each individuals, the first row represents baseline, while the second row represents follow-up measurements.
Columns:
- patid: Participant ID
- casecon: Case (Ig confirmed COVID-19) or Control (Ig negative confirmed control)
- COVID_MODERATE: Moderate or Severe COVID-19 based on DAIDS classification
- ADA to VWF: Proteomic measurement values in NPX units.
DOI: 10.3535/6me-0ch-a5a
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e0b-n27-t9v
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5qd-pqq-ekq
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cda-7j3-5jy
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25375288.v1
title: Date.zip

description: This is information about NIR spectroscopy combined with chemometrics techniques and machine learning for your reference.
DOI: 10.3535/bmc-vmc-ka7
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mb7-bs5-v7j
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25594896.v2
title: Data presented in the 'Sampling' section

description: The database presents the source (density per 500m2 plot and per hectare per site of S. innocua and S. spinosa) of the data presented in the "Sampling" section of the methods concerning the distribution of S. innocua and S. spinosa.
DOI: 10.3535/trf-fyg-hv9
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wey-5zv-pac
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a1q-11t-ayk
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z0n-wtl-znr
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/abm-l5h-97h
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28532387.v2
title: Additionality Revisited for Blue Carbon Ecosystems: Ensuring Real Climate Mitigation - Supplementary Data

description: Saltmarsh and seagrass data and source references from "Additionality Revisited for Blue Carbon Ecosystems: Ensuring Real Climate Mitigation" Williamson et al.'s (2025) response to Houston et al. (2024), Global Change Biology.
DOI: 10.6084/m9.figshare.4738036.v1
title: Efficient solvation free energy simulations: impact of soft-core potential and a new adaptive λ-spacing method

description: The calculation of Gibbs free energy of solvation Δ<i>G</i> is commonly applied to predict the solubility of solutes in different solvents. The transition path between the thermodynamic end states of full and non-existent solute–solvent interactions is described by the spacing of intermediate states and the soft-core potential employed to scale the interactions. The choice of both, the soft-core potential and the distribution of intermediate states, has a large impact on the simulated Δ<i>G</i>. In this work, we determine the free energy of hydration for 10 neutral amino acid side chain analogues to analyse the impact of different soft-core potentials on the consistency of results from two different free energy methods, i.e. thermodynamic integration and free energy perturbation. Additionally, we propose a new method to improve the alchemical pathway by adaptive spacing of intermediate states. Our technique is easy to implement and not limited to any simulation package or free energy technique in particular, making it easily adaptable to a variety of workflows. Exploiting the ability to systematically optimise alchemical pathways, we introduce a scheme to define a suitable number of windows based on prescribed configurational space overlap. With this, excessive sampling is avoided and computational costs can be reduced.
DOI: 10.3535/ahe-4gg-3tw
title: Palaeacanthaspis vasta

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/brx-8ky-8sq
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12073911.v2
title: Bracon brevicornis PRJEB35412 linked-read genome annotation file

description: The genome and annotation files for a linked-read <i>Bracon brevicornis</i> genome, soon to be published in manuscript and already available at the ENA under BioProject PRJEB35412 https://www.ebi.ac.uk/ena/data/view/PRJEB35412. Due to technical issues related to the ongoing COVID-19 crisis in numerous countries and particularly the UK, we are currently unable to update the genome annotation with proper gene names. Therefore, we are sharing the annotation (.gff) file in the intermediate time until we can update the annotation properly.<br>Note: there has been an update from the April version to the (new) July version.
DOI: 10.6084/m9.figshare.25567323.v1
title: data and analysis.xlsx

description: A total of 956 college students were surveyed on a RD Questionnaire, SRF Scale, FoMO Scale, and Personal BJW Scale.
DOI: 10.3535/9bp-e5b-z7d
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sa7-4mm-y65
title: Arctolepididae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bjr-5jn-hj9
title: †Leptaeninae Hall & Clarke, 1894

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tv9-t6v-pbz
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19064066.v1
title: Psychometric Evaluation of the Acute Care Nurses’ Job Satisfaction Scale-Revised: A Cross-Sectional Survey

description: Data were collected using QualtricsXM web-based survey platform between June 2021 and September 2021. The study participants were acute care nurses working in Qatar. The SPSS data set includes 111 variables representing demographic variables (5 variables), the Job Demands in Nursing Scale (22 variables), the Job Resources in Nursing Scale (24 variables). the Acute Care Nurses Job Satisfaction Scale (31 variables), one item represent global job satisfaction scale, and the remaining 28 variables were the represent the reverse coding items.<br>
DOI: 10.3535/gf9-spd-j3e
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/glk-75n-ssf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28589561.v1
title: MatRIS-2025-03-12-wbm-geo-opt-symprec=1e-2

description: MatRIS-2025-03-12-wbm-geo-opt-symprec=1e-2
DOI: 10.3535/v3s-mlj-ht7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yck-a3e-635
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26937502.v1
title: Fondriest_et_al_GGG_2024

description: The repository contains the tables of:Sample GPS positions. "GPS_samples_list_new.xlsx;Macrofracture size distributions relative to Figs.S9-S12 (half lenght (m) ; N, cumulative number). "Macrofractures.xlsx";Ultrasonic data waveforms: benchtop P-waveforms and S-waveformsP-wave field seismic dataMicrostructures: high-resolution scans of all oriented thin sections afyer staining with Red Alizarin-SSample photos: photographs of oriented fault zone rock samples analysed in this study
DOI: 10.6084/m9.figshare.28260620.v1
title: Deep Learning based Disease Prediction Using External and Internal Images of Paralichthys Olivaceus

description: Early detection and rapid response to fish disease are essential because fish farms are vulnerable to disease. However, since conventional fish disease diagnosis relies on expert knowledge, it takes a lot of time and money, raising the mortality risk. Recently, to prevent this, research on fish disease prediction using deep learning has been actively conducted. This study proposes a method to diagnose fish diseases by predicting disease symptoms using a deep-learning classification model and an object-detection model on internal and external images of Paralichthys olivaceus. First, images of internal organs are extracted from internal images of Paralichthys olivaceus using a deep-learning segmentation model, and internal symptoms are predicted by training the deep-learning classification model. Next, a deep-learning object-detection model is trained on external images of the Paralichthys olivaceus to detect external symptoms. The internal and external symptoms are then merged and used to predict diseases. We compared the performance of symptom weight-based, data statistics-based, and symptom set learning-based methods in disease prediction. The proposed internal-symptom classification by organ was superior to the symptom object detection, and predicting disease by learning the symptom set using deep learning achieved the highest performance with Top-1 accuracy of 0.5818, and Top-3 accuracy of 0.8364.
DOI: 10.6084/m9.figshare.28562552.v3
title: MRdb - Circulating proteins

description: MRdb - Circulating proteins (91)
DOI: 10.3535/hgd-ycv-vf0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ztr-3v7-xtw
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25671847.v1
title: Why the short face? The face lengths of sthenurine kangaroos scale with negative allometry

description: The larger species in many mammalian clades have relatively longer faces than their smaller relatives. This has been shown to be true for extant kangaroos (Macropodinae), who follow the CREA rule of positive facial allometry; but the extinct short-faced kangaroos (Sthenurinae) have not so far been examined. Using linear measurements, rather than CREA techniques, we show here that sthenurine face lengths scale with negative allometry, thus differing from the trend seen in their extant relatives.
DOI: 10.3535/mwv-gee-jzt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13890277.v1
title: The synaptic marker neurogranin as a disease state biomarker in Alzheimer’s disease: a systematic review and meta-analysis

description: <b>Objective:</b> Synaptic degeneration is the pathologic foundation of cognitive decline in the Alzheimer’s disease (AD) continuum. We aimed to determine whether cerebrospinal fluid (CSF) synaptic marker neurogranin (Ng) is a disease state or a disease stage biomarker in the AD continuum. <b>Methods:</b> Studies comparing CSF Ng levels among AD, mild cognitive impairment (MCI) and healthy participants were included. Studies were eligible if the correlation between CSF Ng levels and Mini-Mental Status Examination (MMSE) scores was investigated. <b>Results:</b> Twenty-one studies met our inclusion criteria (<i>n</i> = 4515). The magnitude of effect sizes was more apparent in AD (standardized mean difference [SMD] = 1.72; 95% confidence interval [CI] = 1.23–2.22), than in MCI (SMD = 0.82; 95% CI = 0.29–1.34) compared to control populations. These results suggest that CSF Ng can discriminate AD and MCI from control populations, implying that synaptic degeneration worsens as patients progress from MCI to AD. However, there was a very weak correlation between CSF Ng levels and MMSE scores (<i>r</i> = −0.15; 95% CI = −0.21–-0.08) among the whole populations, suggesting that an increment of CSF Ng is best considered a biological evidence of disease state in the AD continuum. <b>Conclusion:</b> Our study provides evidence that the synaptic marker CSF Ng can be used as a disease state biomarker for the AD continuum. Because synaptic degeneration is a distinct pathologic event from amyloid deposition and neurofibrillary tangle formation, CSF Ng may provide an important supplementation to the AT(N) biomarker system to reveal the sequence of neuropathology.
DOI: 10.6084/m9.figshare.17303009.v3
title: High quantities of small microplastics presenting from surface ocean to abyssal depths in the South Atlantic Subtropical Gyre

description: MP particles were collected in the South Atlantic Gyre and identified with the FTIR imaging.
DOI: 10.15468/dl.bvvaqx
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Morus nigra L."
 ]
}

 The dataset includes 34 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009743-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/szk-0pb-9gt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25464655.v2
title: Microsatellite Motifs

description: Files:Unique Microsatellite Motifs.pdfUnique microsatellite motifs.tsvAppearances of unique microsatellites of period 8.tsvmicro.motifs.tsvMicrosatellite cyclic overlap complements.tsvMicrosatellite cyclic overlap kernels.tsvMicrosatellite motifs embedded overlaps.tsvMicrosatellite Motifs.zip (Entire project)Unique microsatellite appearances per specimen per motif bp.tsvUnique microsatellites of period 8.tsv<br>
DOI: 10.3535/d3f-y5l-gnc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k71-cs1-w46
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0d6-dj2-pts
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28195901.v1
title: Landform classfication data for deep learning model

description: The data is for deep learning landform classfication to train and test.
DOI: 10.3535/3f6-7z3-brc
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27314604.v1
title: <b>Data: Whose voice matters? Using word embeddings to analyse identity bias in news quotes</b>

description: The research investigates identity bias (gender and race) in the South African news selection and representation of COVID-19 vaccination quotes. Social bias studies have qualitatively examined race and gender bias in South African news, given South Africa’s apartheid history; yet, studies that examine and quantify these biases at the individual level using news quotes from a representative South African news corpus remain limited. To address this gap, we examined race and gender bias in news selection and framing of quotes. We used word embedding trained on 22,627 vaccination quotes from 76 South African news sources between 2020 and 2023. These large-scale processing embeddings are unbiased by design but can learn and uncover biases hidden in language. Our findings reveal gender and race bias in the news selection and framing of quotes -- journalists privilege White voices as more authoritative and connected to global and technical vaccination discourse but confine black voices to primarily localised contexts. They also quote male speakers more frequently in the news than females.<b> </b>In an era where human biases are becoming increasingly implicit, we argue that embeddings offer a robust tool to unearth, monitor, and evaluate these biases in the news and beyond.
DOI: 10.3535/rvt-k6r-1ln
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x12-3tp-x84
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xkr-xym-dng
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13252052.v1
title: Nutrient enrichment changes water transport structures of savanna woody plants

description: Raw data tables used to support "Nutrient enrichment changes water transport structures of savanna woody plants" study.
DOI: 10.3535/7vs-btb-s83
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/teq-ma3-hls
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14959320.v1
title: Behavioural intervention for adolescent uptake of family planning: a randomized controlled trial, Uganda: Supplementary Material

description: Supplementary material for WHO Bulletin manuscript.Flanagan S, Gorstein A, Nicholson M, Bradish S, Amanyire D, Gidudu A, Aucur F, Twesigye J, Kyateka F, Balamaga S, Buttenheim A, & Zimmerman E. (2021)
DOI: 10.6084/m9.figshare.2290366.v1
title: Devonian magmatism in the accretionary complex of southern Chile.

description: Table S3. Metasedimentary Rocks
DOI: 10.6084/m9.figshare.28190393.v1
title: Ormosia_boluoensis_genome

description: Ormosia boluoensis genome, annotation and SNP
DOI: 10.6084/m9.figshare.4762492.v1
title: AFM white

description: white noise