cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2btr64
title: CCDC 2169696: Experimental Crystal Structure Determination

description: Related Article: Jian-Jun Liu, Jia-Jia Fu, Teng Liu, Fei-Xiang Cheng|2022|J.Solid State Chem.|313|123346|doi:10.1016/j.jssc.2022.123346
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8004910
title: Allergens - gluten, peanut, hazelnut, soya in foods

description: Allergens - gluten, peanut, hazelnut, soya in foods and developed food products
DOI: 10.5281/zenodo.8004909
title: Allergens - gluten, peanut, hazelnut, soya in foods

description: Allergens - gluten, peanut, hazelnut, soya in foods and developed food products
DOI: 10.6084/m9.figshare.22769345.v2
title: Supplementary material for "The presence and severity of NAFLD are associated with cognitive impairment and hippocampal damage"

description: Supplementary material
DOI: 10.23729/b1111fbb-5289-4258-a276-42ce002fdb0d
title: Nuclear lamina strain states revealed by intermolecular force biosensor

description: Nuclear lamins have been considered to be an important structural element of the nucleus. The nuclear lamina is thought both to shield DNA from excessive mechanical forces and to transmit mechanical forces onto the DNA. However, to date there is not yet a technical approach to directly measure mechanical forces on nuclear lamins at the protein level. To overcome this limitation, we developed a nanobody-based intermolecular tension FRET biosensor capable of measuring the mechanical strain of lamin filaments. Using this sensor, we were able to show that the nuclear lamina is subjected to significant force. These forces are dependent on nuclear volume, actomyosin contractility, functional LINC complex, chromatin condensation state, cell cycle, and EMT. Interestingly, large forces were also present on nucleoplasmic lamins, indicating that these lamins may also have an important mechanical role in the nucleus. Overall, we demonstrate that the nanobody-based approach allows construction of biosensors for complex protein structures for mechanobiology studies.
DOI: 10.5281/zenodo.7994921
title: Repeat annotation of a chromosomal-level assembly of the Callosobruchus maculatus genome

description: A curated repeat library &lt;c.mac_HiC_plus_beetle_library.lib&gt; was constructed by manually curating the most abundant interspersed repeats identified using RepeatModeler (Smit et al., 2010). The curated library was combined with a beetle-specific library, constructed using RepeatMasker’s queryRepeatDatabase.pl script (-species coleoptera). The genome repeat annotation was generated with RepeatMasker (Smit and Hubley, 2010).
DOI: 10.5281/zenodo.7994920
title: Repeat annotation of a chromosomal-level assembly of the Callosobruchus maculatus genome

description: A curated repeat library &lt;c.mac_HiC_plus_beetle_library.lib&gt; was constructed by manually curating the most abundant interspersed repeats identified using RepeatModeler (Smit et al., 2010). The curated library was combined with a beetle-specific library, constructed using RepeatMasker’s queryRepeatDatabase.pl script (-species coleoptera). The genome repeat annotation was generated with RepeatMasker (Smit and Hubley, 2010).
DOI: 10.6084/m9.figshare.23295044.v1
title: Soil tests

description: Fourteen soil samples, labeled as A to N, have undergone evaporation tests, and the parameters obtained from the optimized inversion of all parameterization schemes are summarized in each file “total_para-X-sample.mat”, and X means the label of soil sample. The mat file is a standard-format of Matlab software, which can be directly loaded using the "load" command. Please refer to the "Data-format-readme.xlsx" file for the parameters corresponding to data in “total_para-X-sample.mat” file.
DOI: 10.6084/m9.figshare.23295146
title: Characterization and functional analysis of Wnt3a during hair follicle development in the Angora rabbit (<em>Oryctolagus cuniculus</em>)

description: Hair follicle development is an extremely complex process regulated by multiple factors. Previously we identified that Wnt3a, a signaling protein of the Wnt family, can promote hair follicle stem cell (HFSC) proliferation and suppress apoptosis via the signaling pathway of Wnt/β-catenin. However, the influence of Wnt3a on the dermal papilla cells (DPCs) is still undetermined. In this study, rabbit gene Wnt3a CDS was cloned, and the overexpression and siRNA knockdown were performed. The bioinformatic analysis of Wnt3a shows that it has hydrophobicity and a signal peptide. Wnt3a overexpression and knockdown markedly elevated and reduced its mRNA expression, and the signaling pathway of Wnt/β-catenin genes, including <em>CCND1</em>, <em>CTNNB1</em>, <em>C-JUN</em>, <em>LEF1</em>, <em>FOSL1</em>, and <em>MYC</em> (<em>P</em> &lt; 0.01). Furthermore, Wnt3a substantially promoted DPCs’ proliferation and suppressed apoptosis (<em>P</em> &lt; 0.01). Wnt3a overexpression also affected the expression of LEF1 and MYC proteins. Our results indicate that Wnt3a promotes Wnt/β-catenin signaling in DPCs. This study provides a theoretical foundation on the association of Wnt3a with hair growth and development.
DOI: 10.5519/qd.gh27c533
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (252 records)
DOI: 10.6084/m9.figshare.22633837
title: GGI-MICROBIOME-03-20 Source Data

description: Source data used to create all figures and tables
DOI: 10.6084/m9.figshare.22633837.v3
title: GGI-MICROBIOME-03-20 Source Data

description: Source data used to create all figures and tables
DOI: 10.6084/m9.figshare.22633837.v4
title: GGI-MICROBIOME-03-20 Source Data

description: Source data used to create all figures and tables
DOI: 10.5281/zenodo.7868558
title: Infrared action spectroscopy as tool for probing gas-phase dynamics: Protonated Dimethyl Ether ((CH3)2OH+) formed by the reaction of CH3OH2+ with CH3OH

description: The series of folder contain the .log files from Gaussian(R) 16 of the different species and at different level of theories, as specified in the subfolders and filenames. The data refer to calculations that have been submitted for publication as an original research paper: Title: "Infrared action spectroscopy as tool for probing gas-phase dynamics: Protonated Dimethyl Ether, (CH<sub>3</sub>)<sub>2</sub>OH<sup>+</sup>, formed by the reaction of CH<sub>3</sub>OH<sub>2</sub><sup>+</sup> with CH<sub>3</sub>OH Journal: Molecular Physics Authors: V. Richardson, D.B. Rap, S. Brünken and D. Ascenzi
description: The research leading to these results has received funding from LASERLAB-EUROPE (grant agreement no. 871124, European Union's Horizon 2020 research and innovation programme), from the Deutsche Forschungsgemeinschaft (DFG, grant SCHL 341/15–1), and from NWO Exact and Natural Sciences through the use of supercomputer facilities at SURFsara in Amsterdam (NWO Rekentijd grant 2021.055). This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska Curie grant agreement No 811312 for the project "Astro-Chemical Origins" (ACO) and from MUR PRIN 2020 project n. 2020AFB3FX "Astrochemistry beyond the second period elements".
DOI: 10.5281/zenodo.7868559
title: Infrared action spectroscopy as tool for probing gas-phase dynamics: Protonated Dimethyl Ether ((CH3)2OH+) formed by the reaction of CH3OH2+ with CH3OH

description: The series of folder contain the .log files from Gaussian(R) 16 of the different species and at different level of theories, as specified in the subfolders and filenames. The data refer to calculations that have been submitted for publication as an original research paper: Title: "Infrared action spectroscopy as tool for probing gas-phase dynamics: Protonated Dimethyl Ether, (CH<sub>3</sub>)<sub>2</sub>OH<sup>+</sup>, formed by the reaction of CH<sub>3</sub>OH<sub>2</sub><sup>+</sup> with CH<sub>3</sub>OH Journal: Molecular Physics Authors: V. Richardson, D.B. Rap, S. Brünken and D. Ascenzi
description: The research leading to these results has received funding from LASERLAB-EUROPE (grant agreement no. 871124, European Union's Horizon 2020 research and innovation programme), from the Deutsche Forschungsgemeinschaft (DFG, grant SCHL 341/15–1), and from NWO Exact and Natural Sciences through the use of supercomputer facilities at SURFsara in Amsterdam (NWO Rekentijd grant 2021.055). This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska Curie grant agreement No 811312 for the project "Astro-Chemical Origins" (ACO) and from MUR PRIN 2020 project n. 2020AFB3FX "Astrochemistry beyond the second period elements".
DOI: 10.5519/qd.7wy6r4gz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (48 records)
DOI: 10.6084/m9.figshare.23295044.v2
title: Soil tests

description: Fourteen soil samples, labeled as A to N, have undergone evaporation tests, and the parameters obtained from the optimized inversion of all parameterization schemes are summarized in each file “total_para-X-sample.mat”, and X means the label of soil sample. The mat file is a standard-format of Matlab software, which can be directly loaded using the "load" command. Please refer to the "Data-format-readme.xlsx" file for the parameters corresponding to data in “total_para-X-sample.mat” file.
DOI: 10.21227/9mty-pf96
title: Securing the Physical Layer of IEEE 802.15.4 Through Cooperative Jamming

description: Physical layer security is a sought-after concept to complement the established upper layer security techniques in wireless communications. An appealing approach to achieve physical layer security is to use cooperative jamming with interference that is known to and suppressible by the legitimate receiver but unknown to, and hence not suppressible by, the eavesdropper. Suppressing known interference (KI), however, is challenging due to the numerous unknowns, including carrier and sampling frequency offsets, that impact its reception. This dataset presents a measurement campaign that captures this challenge in the context of Internet-of-Things applications. The dataset consists of baseband signals recorded with a software-defined radio that acts as an IEEE 802.15.4 receiver, receiving simultaneously the signal-of-interest and KI. This allows to study the performance of KI cancellation algorithms and the impact of KI cancellation on IEEE 802.15.4 signal processing.
DOI: 10.5285/465d86a5750447128f24f79c4f2ecdd4
title: BBUBL: 1 km gridded output from WRF v3.6.1 model runs for the Birmingham conurbation for 2015

description: This dataset contains a range of parameters from a 1 km gridded output from runs of version 3.6.1 of the Weather Research and Forecasting (WRF) model deployed on the ARCHER UK National Supercomputing Service. These runs were part of the NERC funded BBUBL project (Biotelemetry/Bio-aerial-platforms for the Urban Boundary Layer - also known as City Flocks, NERC grant award NE/N003195/1). The domain of the model runs was over the set over Birmingham conurbation for all of 2015. This geo-temporal domain encompasses measurements of the urban boundary layer obtained from instrumentation attached to birds flown around the area. See related dataset. The WRF model set up followed that used by Heaviside et al. (2015) - see linked documentation for details - and was run on the ARCHER UK National Supercomputing Service. Meteorology data from the European Centre for Medium-range Weather Forecasts (ECMWF) ERA-interim reanalysis data for initial and lateral boundary conditions. The WRF v3.6.1 model set up implemented in this study included four nested domains. The domains had grid resolutions of 36 km x 36 km, 12 km x 12 km, 3 km x 3 km and 1 km x 1 km. The finest domain covered the West Midlands, centering over Birmingham. The multi-layer building energy parametrization (BEP) scheme with three land-use types (low-intensity residential, high-intensity residential and industrial/commercial) was also used.
DOI: 10.5281/zenodo.7684724
title: Recurrent Campylobacter jejuni infections with in vivo selection of resistance to macrolides and carbapenems – assembly dataset

description: <strong>Dataset</strong> This dataset comprises the genome assemblies of the first isolate collected from each clinical case (A1 and B1), together with the respective annotation. File “Cje_metadata.xlsx” contains the genome assembly statistics for each isolate, including the European Nucleotide Archive (ENA) accession numbers, genotyping and antibiotic resistance profiles. The directory “Assemblies/” contains the genome assembly (.fasta and .gbk formats) of each isolate presented in the metadata file. <strong>Genome assembly and annotation</strong> Reads quality control and improvement, species confirmation (using the 8GB database available at https://ccb.jhu.edu/software/kraken/) and <em>de novo</em> assembly were performed using the INNUca v4.2.2 pipeline (https://github.com/B-UMMI/INNUca). Briefly, after reads’ quality analysis using FastQC v0.11.5 (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) and cleaning with Trimmomatic v0.38 (http://www.usadellab.org/cms/?page=trimmomatic), genomes were <em>de novo</em> assembled with SPAdes 3.14.0 (http://bioinf.spbau.ru/spades) with a mean depth of coverage above 160x, and subsequently improved using Pilon v1.23. Multi-Locus Sequence Typing (MLST) was performed using mlst v2.18.1 software (https://github.com/tseemann/mlst). Genome annotation was performed with RAST server v2.0 (http://rast.nmpdr.org/). The raw sequence reads of each isolate were deposited at ENA under the study accession numbers PRJEB42628 and PRJNA505131. <strong>Funding</strong> This work was supported by GenomePT (ref. POCI-01-0145-FEDER-022184) from Fundação para a Ciência e Tecnologia, Portugal.
DOI: 10.5281/zenodo.7684723
title: Recurrent Campylobacter jejuni infections with in vivo selection of resistance to macrolides and carbapenems – assembly dataset

description: <strong>Dataset</strong> This dataset comprises the genome assemblies of the first isolate collected from each clinical case (A1 and B1), together with the respective annotation. File “Cje_metadata.xlsx” contains the genome assembly statistics for each isolate, including the European Nucleotide Archive (ENA) accession numbers, genotyping and antibiotic resistance profiles. The directory “Assemblies/” contains the genome assembly (.fasta and .gbk formats) of each isolate presented in the metadata file. <strong>Genome assembly and annotation</strong> Reads quality control and improvement, species confirmation (using the 8GB database available at https://ccb.jhu.edu/software/kraken/) and <em>de novo</em> assembly were performed using the INNUca v4.2.2 pipeline (https://github.com/B-UMMI/INNUca). Briefly, after reads’ quality analysis using FastQC v0.11.5 (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) and cleaning with Trimmomatic v0.38 (http://www.usadellab.org/cms/?page=trimmomatic), genomes were <em>de novo</em> assembled with SPAdes 3.14.0 (http://bioinf.spbau.ru/spades) with a mean depth of coverage above 160x, and subsequently improved using Pilon v1.23. Multi-Locus Sequence Typing (MLST) was performed using mlst v2.18.1 software (https://github.com/tseemann/mlst). Genome annotation was performed with RAST server v2.0 (http://rast.nmpdr.org/). The raw sequence reads of each isolate were deposited at ENA under the study accession numbers PRJEB42628 and PRJNA505131. <strong>Funding</strong> This work was supported by GenomePT (ref. POCI-01-0145-FEDER-022184) from Fundação para a Ciência e Tecnologia, Portugal.
DOI: 10.5517/ccdc.csd.cc2bxch4
title: CCDC 2172216: Experimental Crystal Structure Determination

description: Related Article: Jia‐Rui Wu, Dongxia Li, Gengxin Wu, Meng‐Hao Li, Ying‐Wei Yang|2022|Angew.Chem.,Int.Ed.|61|e202210579|doi:10.1002/anie.202210579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxf4v
title: CCDC 2172267: Experimental Crystal Structure Determination

description: Related Article: Dipendu Mandal, Ting Chen, Zheng‐Wang Qu, Stefan Grimme, Douglas W. Stephan|2022|Chem.-Eur.J.|28|202201701|doi:10.1002/chem.202201701
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxfb1
title: CCDC 2172273: Experimental Crystal Structure Determination

description: Related Article: Wenwen Zi, Jun Zhang, Jingang Jiang, Konggang Qu, Shuo Tao, Junjun Zhang|2023|Chem.-Eur.J.|29|e202202754|doi:10.1002/chem.202202754
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxj82
title: CCDC 2172364: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxj93
title: CCDC 2172365: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxjb4
title: CCDC 2172366: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxjc5
title: CCDC 2172367: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxjd6
title: CCDC 2172368: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxjf7
title: CCDC 2172369: Experimental Crystal Structure Determination

description: Related Article: Nans Roques, Anthony Tovar‐Molle, Carine Duhayon, Stéphane Brandès, Alex Spieß, Christoph Janiak, Jean‐Pascal Sutter|2022|Chem.-Eur.J.|28|e202201935|doi:10.1002/chem.202201935
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5498579
title: Cristiano Ronaldo | All Club Goals
DOI: 10.6084/m9.figshare.21401880
title: Surface water

description: These are the geographic locations of digitized surface water bodies from high resolution imagery made available through Google Earth.
DOI: 10.6084/m9.figshare.21401880.v1
title: Surface water

description: These are the geographic locations of digitized surface water bodies from high resolution imagery made available through Google Earth.
DOI: 10.6084/m9.figshare.22680310.v1
title: TableS1.tsv.gz

description: Table with genome identifiers and other metadata for genomes with species annotation in the taxonomic order Enterobacterales. From the RefSeq database as of January 2023
DOI: 10.6084/m9.figshare.22680310
title: TableS1.tsv.gz

description: Table with genome identifiers and other metadata for genomes with species annotation in the taxonomic order Enterobacterales. From the RefSeq database as of January 2023
DOI: 10.17909/4eps-dc89
title: COSMOS-Web+CEERS data

description: All COSMOS-Web and CEERS data available as of March 2023
DOI: 10.6084/m9.figshare.22680322.v1
title: TableS2.tsv.gz

description: Distances by Average Nucleotide Identity and minHash (mash, dashing), for Enterobacterales.
DOI: 10.6084/m9.figshare.22680322
title: TableS2.tsv.gz

description: Distances by Average Nucleotide Identity and minHash (mash, dashing), for Enterobacterales.
DOI: 10.6084/m9.figshare.22680313
title: TableS3.tsv.gz

description: Clusters in the Escherichia coli + Shigella group
DOI: 10.6084/m9.figshare.22680316
title: TableS4.tsv.gz

description: MinHash distances between genera outside Enterobacterales
DOI: 10.6084/m9.figshare.22680316.v1
title: TableS4.tsv.gz

description: MinHash distances between genera outside Enterobacterales
DOI: 10.34740/kaggle/dsv/5498809
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.5281/zenodo.7554845
title: Hydrogen Diffusion in Silicate Glasses

description: This repository contains all data and MATLAB(c) scripts that were used to calculate diffusion profiles in the associated publication.
DOI: 10.5281/zenodo.7554844
title: Hydrogen Diffusion in Silicate Glasses

description: This repository contains all data and MATLAB(c) scripts that were used to calculate diffusion profiles in the associated publication.