cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hj1t4/1
title: Medellín Origin Destination Survey 2005

description: Medellin Origin-destination survey (dated back to 2005-2006). Data gathered by Universidad Nacional de Colombia for Area Metropolitana del Valle de Aburrá (cite as: AREA Metropolitana del Valle de Aburrá 2006. Chapter 2: Diagnóstico. Formulación del Plan Maestro de Movilidad para la Región Metropolitana del Valle de Aburrá. Informe Final pp. 102-108 and Universidad Nacional de Colombia and AREA Metropolitana del Valle de Aburrá 2006. Encuesta origen destino de viajes 2005 del Valle de Aburrá, estudios de tránsito complementarios y validación. Technical Report). Column description: ORIG describes the id of the origin zone of the trip (from 1 to 413). DEST the id of the destination zone (from 1 to 413). EST indicates the "estrato" or socioeconomic class/status of the household of the traveler (1 the lowest income householders and 6 the richest). HSAL indicates the departure hour (decimal) of the trip, HLLEG the arrival hour (decimal) of the trip, MOT indicates the purpose of trip (1 work, 2 study, 3 shopping, 4 health, 5 recreation, 6 return home, 7 others), HMV describes the mean hour of trip, FEV is the expansion factor of the survey.
DOI: 10.5061/dryad.js509/1
title: dS, dN and dN/dS values between Atta cephalotes and Acromyrmex echinatior

description: Calculated by codeml from one-to-one orthologs (see article methods for details)
DOI: 10.5061/dryad.m541q/1
title: Source data

description: Source data is identified per Figure
DOI: 10.5061/dryad.n29s7/1
title: raw data Functional Ecology paper Endure and Call for Help Lucas-Barbosa et al 2016

description: raw data on: 1) pollinator visitation rates to Brassica nigra plants during day and night; 2) Plant Chemistry including volatile emission and carbon and nitrogen contents; 3) Plant fitness including biomass and seed production
DOI: 10.5061/dryad.p660m.2/10.2
title: cal3_rates_code.R

description: The R code used to generate the three rates used in the cal3 dating code; in R code format.
DOI: 10.5061/dryad.p660m.2/11.2
title: cal3_dating_code.R

description: The R code used to perform the cal3 dating; in R code format.
DOI: 10.5061/dryad.p660m.2/12.2
title: Hedman_code.R

description: The R code used to perform the Hedman dating; in R code format.
DOI: 10.5061/dryad.p660m.2/13.2
title: cal3_dates.txt

description: The cal3 dates output from R; in plain text format.
DOI: 10.5061/dryad.p660m.2/14.2
title: Hedman_dates.txt

description: The Hedman dates output from R; in plain text format.
DOI: 10.5061/dryad.p660m.2/7.2
title: dinosaur_occurrences.txt

description: The dinosaur occurrences used for dating; in plain text format.
DOI: 10.5061/dryad.p660m.2/8.2
title: dinosaur_tipages.txt

description: The tip ages (hard lower bounds) used for dating; in plain text format.
DOI: 10.5061/dryad.p660m.2/9.2
title: dinosaur_timelist.txt

description: The time list data used to generate the three rates used in the cal3 function; in plain text format.
DOI: 10.5061/dryad.rj2tb/1
title: Pigmentation Scores_100th Generation

description: Last column (D) contains data for pigmentation scores. Pigmentation scores are given as sum for abdominal tergites (males tergite 2-6; females tergite 2-7).
DOI: 10.5061/dryad.sj4fn/1
title: Nitrogen and carbon stable isotope data for Queen scallop Aequipecten opercularis (Linnaeus, 1758) (AphiaID: 140687) muscle tissue

description: The file comprises measurements of carbon and nitrogen stable isotope composition in the adductor muscle tissue of 535 individual Queen scallop Aequipecten opercularis sampled from northeast Atlantic shelf seas in 2001 and 2010. Data collection and existing analyses are described in the following publications: (1) Barnes, C., Jennings, S. & Barry, J.T. (2009) Environmental correlates of large-scale spatial variation in the δ13C of marine animals. Estuarine, Coastal and Shelf Science, 81, 368-374; (2) Jennings, S. & Warr, K.J. (2003) Environmental correlates of large-scale spatial variation in the δ15N of marine animals. Marine Biology, 142, 1131-1140; (3) Jennings, S. & Van der Molen, J. (2015) Trophic levels of marine consumers from nitrogen stable isotope analysis: estimation and uncertainty. ICES Journal of Marine Science, 72, 2289-2300. Additional descriptions of the data structure and data collection process are provided in the accompanying "readme" file.
DOI: 10.5061/dryad.sj4fn/2
title: Sampling Locations

description: PDF map of of sampling locations.
DOI: 10.5061/dryad.vr954/16
title: Plateosaurus mandible unilateral anterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating an unilateral bite at the anterior biting position.
DOI: 10.5061/dryad.vr954/17
title: Plateosaurus mandible unilateral middle bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a unilateral bite at the middle biting position.
DOI: 10.5061/dryad.vr954/18
title: Plateosaurus mandible unilateral posterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating an unilateral bite at the posterior biting position.
DOI: 10.5061/dryad.vr954/19
title: Plateosaurus scaled anterior bite

description: Abaqus input file of a finite element model of the cranium of Plateosaurus, simulating a bite at the anteriormost four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/20
title: Plateosaurus scaled middle bite

description: Abaqus input file of a finite element model of the cranium of Plateosaurus, simulating a bite at the middle four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/21
title: Plateosaurus scaled posterior bite

description: Abaqus input file of a finite element model of the cranium of Plateosaurus, simulating a bite at the posteriormost four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/22
title: Plateosaurus mandible scaled anterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bite at the anteriormost four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.11q0d/1
title: Griffin_et_al_2016_XA_Data

description: Data from lifespan assay of 31718 Drosophila melanogaster. Lifespan (days) measured for 80 lines of ~200 individuals per line and sex, measured across  4 replicate blocks. Individuals within lines share the same X chromosome (CHR = X), or major autosomes (CHR = A). Column headings are CHR for line type, LINE for line number, SEX for male (M) and female (F), BLOCK for replicate block, and LIFESPAN for individual longevity. For further detail see methods in Griffin et al., 2016.
DOI: 10.5061/dryad.34f4q/1
title: NPP_VgpmFromQaa_25_2.0_1997-2012

description: Series of 5-day NPP for period 1997-2012 in HDF4 files
DOI: 10.5061/dryad.34f4q/2
title: NPP_VgpmFromQaa_25_2.0_2013-2015
DOI: 10.5061/dryad.46470/1
title: Individual behavioral measures

description: Individual behavioral measures (including whether or not a cricket called during the trial, which was manually scored) before and after a social challenge as well as size measurement for each individual.
DOI: 10.5061/dryad.472b9/1
title: Mitogenome alignment for Asian golden cat
DOI: 10.5061/dryad.472b9/2
title: Mitogenome alignment for Bay cat
DOI: 10.5061/dryad.5bb65/1
title: stomach contents Bradypodion

description: This file contains the raw diet data for all species of Bradypodion included in the study. Each prey item identified for each individual is measured and included in the table. Species names and individual IDs are provided.
DOI: 10.5061/dryad.5bb65/2
title: Scores PCA

description: The excel file contains the PC scores of the geometric morphometric analysis upon which further analyses were performed. Sheets present data for males, females and both sexes together.
DOI: 10.5061/dryad.62s22/10
title: Quality-filtered VCF file for treatment-replicate 0BV-I
DOI: 10.5061/dryad.62s22/11
title: Quality-filtered VCF file for treatment-replicate 0BV-II
DOI: 10.5061/dryad.62s22/12
title: Quality-filtered VCF file for treatment-replicate 0BV-III
DOI: 10.5061/dryad.62s22/13
title: Quality-filtered VCF file for treatment-replicate 02BV-I
DOI: 10.5061/dryad.62s22/14
title: Quality-filtered VCF file for treatment-replicate 02BV-II
DOI: 10.5061/dryad.62s22/15
title: Quality-filtered VCF file for treatment-replicate 02BV-III
DOI: 10.5061/dryad.62s22/9
title: Quality-filtered VCF file for treatment-replicate 2B-III
DOI: 10.5061/dryad.67fk8/1
title: Ground-dove MrBayes tree file

description: 50% majority-rule consensus tree from two independent MrBayes runs.
DOI: 10.5061/dryad.67fk8/2
title: Ground-dove Garli tree file

description: Maximum likelihood tree file from two searches of 500 bootstrap replicates in GARLI.
DOI: 10.5061/dryad.7gv8h/1
title: Complete raw data set

description: Each worksheet contains all data used for a given figure as referenced. For more information, see corresponding figure legends.
DOI: 10.5061/dryad.7kv8r/1
title: Fig.3

description: Mathematica file
DOI: 10.5061/dryad.7kv8r/2
title: Fig4_top

description: Matlab file
DOI: 10.5061/dryad.7kv8r/3
title: Fig4_bottom

description: Matlab file
DOI: 10.5061/dryad.98g01/1
title: students_data

description: Contains all the data acquired by the group of students. Details of the columns are as follows: 
UserID: unique ID attributed to each observer in the Ocean Networks Canada digital infrastructure database.
Date: Date of video acquisition
Time: Time of video acquisition
Counts: Number of sablefish in the video
MatchDateTime: Date and Time used to match the counts among the different groups
DOI: 10.5061/dryad.98g01/3
title: crowd_data

description: Contains all the data acquired by Citizen Scientists using the Digital Fisher crowdsourcing platform. Details of the columns are as follows: 
UserID: unique ID attributed to each observer in the Ocean Networks Canada digital infrastructure database.
Date: Date of video acquisition
Time: Time of video acquisition
Counts: Number of sablefish in the video
MatchDateTime: Date and Time used to match the counts among the different groups
DOI: 10.5061/dryad.98g01/4
title: algorithm_data

description: Contains all the data acquired using the computer vision algorithm. Details of the columns are as follows: 
Video: Name of the video in the Ocean Networks Canada digital infrastructure database.
Date: Date of video acquisition
Time: Time of video acquisition
Counts: Number of sablefish in the video
MatchDateTime: Date and Time used to match the counts among the different groups
DOI: 10.5061/dryad.cd1sf/1
title: Data summary Dryad

description: Spreadsheet containing contrast measures and behavioural data.
DOI: 10.5061/dryad.d3m23/1
title: 12MonthSeedRemoval

description: Recorded Seed Removal (Out of 5) for Seven Tallgrass Prairie Species by Small Mammals Over 12 Months from the Tallgrass Prairie Environment
DOI: 10.5061/dryad.d3m23/2
title: CaptiveTrialSeedlingDamage

description: Seeding Damage (Rated Out of 5) Considering Seven Tallgrass Prairie Species Caused by Small Mammals Within an Enclosed Environment After 7 Days
DOI: 10.5061/dryad.d3m23/3
title: CaptiveTrialSeedRemoval

description: Seed Removal (Out of 5) for 7 Tallgrass Prairie Species Caused by Small Mammals Within an Enclosed Environment Over 7 Days
DOI: 10.5061/dryad.d3m23/4
title: DNAInstancesDetected

description: Instances of Plant DNA Found Within Samples of Mouse Scat Ranked As Native or Non-Native Considering the Tallgrass Prairie Environment
DOI: 10.5061/dryad.d3m23/5
title: DNARatioData

description: Ratio of Native and Non-Native Plant DNA Instances Detected in the Small Mammal Scat Samples by Replicate and Month
DOI: 10.5061/dryad.d3m23/6
title: ExclosureAbundanceRichnessData

description: Data for the Full Factorial Design of Mowed, Seeded, and Exclosed Considering Plant Abundance and Richness.
DOI: 10.5061/dryad.g26d0/4
title: Population genetics analyses

description: SNP data files for principal components analyses and summary statistics for pi output from Stacks pipeline.
DOI: 10.5061/dryad.g26d0/5
title: SNAPP species tree

description: XML and species tree files.
DOI: 10.5061/dryad.hg77n/1
title: Data SSR-analyses

description: SSR-data for native and invasive field populations of Silene latifolia, which were used for the calculation of the population co-ancestry matrix. The first column "Ind" provides ID´s for the sampled field individuals, which consist of population_sex (f=female, m=male)_consectual number. The colums "SL1"-"SL85" correspond to the SSR-marker used in the study.
DOI: 10.5061/dryad.hg77n/2
title: Pairwise population co-ancestry for native and invasive populations

description: R object: Pairwise within and among population co-ancestry coefficients calculated from SSR-data for native and invasive study populations.
DOI: 10.5061/dryad.hg77n/3
title: Pairwise population co-ancestry for native populations

description: R-object: Pairwise within and among population co-ancestry coefficients calculated from SSR-data for native study populations.
DOI: 10.5061/dryad.hg77n/4
title: Pairwise population co-ancestry for invasive populations

description: R-object: Pairwise within and among population co-ancestry coefficients calculated from SSR-data for invasive study populations.
DOI: 10.5061/dryad.hg77n/5
title: Data experiment

description: Data from the enemy release experiment.
DOI: 10.5061/dryad.hj1t4/2
title: Manizales Origin Destination Survey 2005

description: Manizales Origin-destination survey (dated back to 2005). Data gathered by Universidad Nacional de Colombia for Alcaldía de Manizales (cite as: Alcaldía de Manizales 2005. Plan de movilidad para el municipio de Manizales. Informe del estudio origen-destino. Technical Report). Column description: ORIG describes the id of the origin zone of the trip (from 1 to 57). DEST the id of the destination zone (from 1 to 57). EST indicates the "estrato" or socioeconomic class/status of the household of the traveler (1 the lowest income householders and 6 the richest). HSAL indicates the departure hour (decimal) of the trip, HLLEG the arrival hour (decimal) of the trip, HMV describes the mean hour of trip, FEV is the expansion factor of the survey.
DOI: 10.5061/dryad.js509/2
title: Substitutions between the SB and Sb social chromosome variants in 403 protein coding genes

description: Substitutions between the SB and Sb variants in 403 protein coding genes in the social chromosome supergene region of the fire ant Solenopsis invicta. The table includes gene name, gene length, the number of synonymous and nonsynonymous substitutions (syn_substitutions and nonsyn_substitutions) and their rate (ds and dn).
DOI: 10.5061/dryad.js509/3
title: consensus-bb

description: Consensus DNA sequence of 403 protein coding genes in the SB variant of the fire ant social chromosome supergene.
DOI: 10.5061/dryad.js509/4
title: consensus-bb.cds

description: Consensus amino acid sequence of 403 protein-coding genes in the SB variant of the fire ant Solenopsis invicta social chromosome supergene.
DOI: 10.5061/dryad.js509/5
title: consensus-lb

description: Consensus DNA sequence of 403 protein-coding genes in the Sb variant of the fire ant Solenopsis invicta social chromosome supergene.
DOI: 10.5061/dryad.js509/6
title: consensus-lb.cds

description: Consensus amino acid sequence of 403 protein-coding genes in the Sb variant of the fire ant Solenopsis invicta social chromosome supergene.
DOI: 10.5061/dryad.js509/7
title: Genotypes of B and b haploid males.

description: Filtered VCF file with variants called from whole-genome sequences of 16 Solenopsis invicta haploid males with Cortex. 8 samples have the Gp-9B genotype (f1_B to f7_B, gdo10), 8 samples have the Gp-9b genotype (f1b to f7b, gdo10).
DOI: 10.5061/dryad.p2g6p/1
title: Acevedo_etal_125tip_v2.20Dryad

description: Sapindaceae 2-locus, 125-tip data set
DOI: 10.5061/dryad.p2g6p/2
title: Acevedo_etal_247tipS10580v1.5Dryad

description: Sapindaceae 247-tip data set based 
on Buerki et al. S10580 with 5 newly added taxa
DOI: 10.5061/dryad.p2g6p/3
title: Acevedo_etal_Sapind_Supplement Figure 1

description: Fig. S1. Maximum likelihood (ML) bootstrap consensus tree based on the
combined 2-gene, 125-tip data set for Paulliniodae and outgroups. Based on GARLI
analysis. ML bootstrap values ≥50% are indicated above the branches. Note expanded
sampling for Cardiospermum relative to our 99-tip analysis.
DOI: 10.5061/dryad.p2g6p/4
title: Acevedo_etal_Sapind_Supplement Figure 2

description: Fig. S2. Maximum likelihood (ML) phylogram based on the combined 2-gene,
125-tip data set for Paulliniodae and outgroups. Based on GARLI analysis. Note branch
length heterogeneity in Cardiospermum. Note branch length heterogeneity in
Cardiospermum and the exceptionally long branch for Cardiospermum integerrimum,
likely due to GC-content change.
DOI: 10.5061/dryad.p2g6p/5
title: Acevedo_etal_Sapind_Supplement Figure 3

description: Fig. S3. Maximum likelihood (ML) bootstrap 50% majority-rule consensus tree
based on the Sapindaceae-wide 247-tip, 8-marker data set modified from Buerki et al.
(2011). Based on GARLI analysis. ML bootstrap values ≥50% are indicated next to the
nodes. Note expanded sampling of Paulliniodae, and a new placement of Sapindus
oligophyllus based on data from the type collection.
DOI: 10.5061/dryad.p660m.1
title: Data from: Probabilistic divergence time estimation without branch lengths: dating the origins of dinosaurs, avian flight and crown birds
DOI: 10.5061/dryad.qj5cr/1
title: ReadMeFirst

description: This file lists and explains the computer codes and data files used in Ravinet et al. (2017).
DOI: 10.5061/dryad.qj5cr/2
title: data_Fig3A

description: Data used to generate Fig. 3A in Ravinet et al. (2017). For more explanations, please refer to the separate file "ReadMeFirst".
DOI: 10.5061/dryad.qj5cr/3
title: data_Fig3B

description: Data used to generate Fig. 3B in Ravinet et al. (2017). For further details, please refer to the separate file "ReadMeFirst".
DOI: 10.5061/dryad.rj2tb/2
title: Pigmentation Scores_Off selection 5th 10th 15th and 20th generation

description: Column 'D' contains data on off-selected flies. The generation column should be read as follows: A1:100th generation/control; A2:Off-selection Gen 5th; A3:Off-selection Gen 10th; A3:Off-selection Gen 15th; A5:Off-selection Gen 20th.
DOI: 10.5061/dryad.rj2tb/3
title: Fecundity_100th Generation

description: Column 'D' contains data on total eggs laid in 12 days.
DOI: 10.5061/dryad.rj2tb/4
title: Longevity_100th Generation_Proportional Hazard Fit

description: Data on longevity are organized in 'proportional hazard fit' test format.
DOI: 10.5061/dryad.vm525/1
title: FileS2_ExpressionQTL

description: Expression QTL supplementary file, analyzed in "Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes". Data file that includes all identified expression QTL associations. Includes tracking IDs of the feature and SNP, positions, p value of association, SNP odds ratio and weight, SNP distance to gene and interaction type (local or trans).
DOI: 10.5061/dryad.vr954/23
title: Plateosaurus mandible scaled middle bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bite at the middle four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/24
title: Plateosaurus mandible scaled posterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bite at the posteriormost four teeth. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/25
title: Plateosaurus mandible scaled unilateral anterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating an unilateral bite at the anterior biting position. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/26
title: Plateosaurus mandible scaled unilateral middle bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating an unilateral bite at the middle biting position. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/27
title: Plateosaurus mandible scaled unilateral posterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating an unilateral bite at the posterior biting position. Muscle forces have been scaled so that the total applied force/surface area equals that of Camarasaurus (the "structural comparison").
DOI: 10.5061/dryad.vr954/28
title: Camarasaurus anterior bite

description: Abaqus input file of a finite element model of the cranium of Camarasaurus, simulating a bite at the anteriormost four teeth.
DOI: 10.5061/dryad.vr954/29
title: Camarasaurus middle bite

description: Abaqus input file of a finite element model of the cranium of Camarasaurus, simulating a bite at the middle four teeth.
DOI: 10.17632/whgp9r7tkd.1
title: TEM images of brain-seeded Abeta40 and Abeta42 fibrils

description: TEM images of negatively stained Abeta40 and Abeta42 fibrils, prepared by seeding synthetic peptides with extracts from brain tissue. Images are 8-bit grayscale tiff files.
DOI: 10.17632/wk6tng39y7.1
title: MOEDAL particle detector code

description: Code used to model the MOEDAL particle detector at CERN. Used to research Quirks
DOI: 10.5061/dryad.04tq4/5
title: metadata_PugetSound_eDNA

description: Metadata for DNA sequences accessioned in Genbank Bioproject 408172.
DOI: 10.5061/dryad.04tq4/6
title: BioSampleObjects

description: Contains more specific Genbank accession information relevant to the project.
DOI: 10.5061/dryad.051h0/1
title: Data from: Delays and loss to follow up before treatment of drug-resistant TB following implementation of Xpert MTB/RIF in South Africa: a retrospective cohort study
DOI: 10.5061/dryad.2k376/1
title: Genotype data for 12 nuclear microsatellite loci for Grevillea paradoxa in GenAlEx format.

description: Genotype data for 12 nuclear microsatellite loci for Grevillea paradoxa in GenAlEx format.
DOI: 10.5061/dryad.2k376/2
title: Genotype data for 12 nuclear microsatellite loci for Melaleuca nematophylla in GenAlEx format.

description: Genotype data for 12 nuclear microsatellite loci for Melaleuca nematophylla in GenAlEx format.
DOI: 10.5061/dryad.2k376/3
title: Haplotype data for Grevillea paradoxa in nexus format.

description: Haplotype data for Grevillea paradoxa in nexus format.
DOI: 10.5061/dryad.2k376/4
title: Haplotype data for Melaleuca nematophylla in nexus format.

description: Haplotype data for Melaleuca nematophylla in nexus format.
DOI: 10.5061/dryad.35h8n/1
title: Rhododendron_data_and_scripts161206

description: This zip file contains simple texts (.txt, .csv, .raw, .ped and .map) and scripts for R and Python (.r and .py).
DOI: 10.5061/dryad.3h4m5.2
title: Data from: Multiple morphological clocks and total-evidence tip-dating in mammals
DOI: 10.5061/dryad.3h4m5.2/1.2
title: Description of All Data Files on Dryad

description: Description of All Data Files on Dryad (docx); this is also available on on the Biology Letters website.  All numbered refs, such as [6], in the descriptions below refer to citations in the main Biology Letters paper or in this document.