cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/c5kjz-xr378
title: Oil well Actinobacterium

description: Grid box YWC210
description: <strong>Tilt Series Date:</strong> 2016-04-11</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3.0°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Fixed cells received from Meng Wang/ Xiao-Lei Wu Lab at Peking University, China</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Firstly wash cells using PBS for 3 times, then add proper volum of 2.5% glutaraldehyde followed 1 hour room temp incubation (done in Peking), then send to Caltech for freezing.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-11-25/rawdata/</p>20160410_YWC210_10025.mrc,  Tilt Series (Pixel Size 0.48 nm), 996.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-11-25/rawdata/20160410_YWC210_10025.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160410_YWC210_10025_full.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-11-25/3dimage_74214/20160410_YWC210_10025_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xc2agd
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alliaria petiolata",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048564-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzatrx
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material citation, Occurrence evidence)",
 "Continent is Europe",
 "Country is Portugal",
 "DatasetKey is one of (Sightings Map of Invasive Plants in Portugal, Observation.org, Nature data from around the World, NABU|naturgucker, BioBlitz Azores: Multitaxa inventories of the biodiversity of “Jardim Duque da Terceira” (Angra do Heroísmo,Terceira Island, Azores, Portugal).)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "PublishingOrg is one of (16e26fb0-7f13-4ae2-b57c-2543f451f5b3, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, bb646dff-a905-4403-a49b-6d378c2cf0d9, 0a80feca-b411-428a-a34e-c5c2fa07cdba)",
 "TaxonKey is Eichhornia crassipes (Mart.) Solms",
 "Year 2019-2024"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011450-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0jr-17b-gbd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6x5-vec-axb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5r0-7y2-vxh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qdn-yvd-yfv
title: †Rotalia Lamarck, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3mm-p4t-5ym
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3tc-cdk-3qn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g32-7fv-qgl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jg-287-74c
title: †Borelis pygmaea Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c63-yzb-ltz
title: Candeina d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sp8-f2y-mmj
title: Planularia gemmata (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vy5-0c7-0hc
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5za-q04-n14
title: †Borelis pygmaea Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g4r-1kb-07e
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04m-p77-7t8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m5h-mdx-jjj
title: †Vaginulina brukenthali Neugeboren, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nck-ek1-4p3
title: Pyramidulina raphanus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/amq-8sn-r99
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yjm-l3p-frq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0nd-aa9-631
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5e-n69-ppk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jdq-9vy-3hs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jmv-1bv-ew9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hvf-z6w-ptv
title: †Heterostegina (Vlerkina) borneensis van der Vlerk, 1929

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m89-590-mp3
title: Protoglobobulimina pupoides (d'Orbigny, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/64b-1cg-r4b
title: Operculina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/leh-g96-9hw
title: Dentalina vertebralis (Batsch, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ja-94v-p13
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hfz-rq1-d1w
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hy-w6k-sld
title: †Miogypsina polymorpha (Rutten, 1911)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q6r-ys9-xh5
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kk6-c8t-s15
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/npp-ery-j25
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wk2-sss-h55
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zr2-b4k-6fl
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cvj-g04-br8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/km2-hm2-8hp
title: †Nummulites fichteli Michelotti, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l1n-0vh-edz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5k5-zpp-l5j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4d-rwq-j9q
title: Operculina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eme-4t0-y73
title: Miliolida Delage & Hérouard, 1896

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c87-1p1-fxw
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3d-2cw-2wt
title: Operculinella Yabe, 1918

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5286/isis.e.rb2510565-1
title: Detection of novel quantum states in honeycomb YbBr3

description: Quantum magnetism, a central aspect of condensed matter physics, is gaining importance in low-dimensional materials, especially two-dimensional systems with strong quantum fluctuations. In this study, we explore novel quantum states in YbBr3, a two-dimensional frustrated honeycomb compound. Previous research suggests a quantum spin liquid ground state with plaquette fluctuations in YbBr3, warranting further investigation of its complex magnetic interactions. Using inelastic neutron scattering, we plan to examine YbBr3 single crystals at 0.6 K under magnetic fields of 0 T, 3 T, and 7 T. These measurements enable analysis of magnon dispersion and the effect of magnetic fields on a potential plaquette valence bond state or other quantum states. Our study will enrich the understanding of quantum phase transitions and magnetism in low-dimensional materials.
DOI: 10.5286/isis.e.rb2510565
title: Detection of novel quantum states in honeycomb YbBr3

description: Quantum magnetism, a central aspect of condensed matter physics, is gaining importance in low-dimensional materials, especially two-dimensional systems with strong quantum fluctuations. In this study, we explore novel quantum states in YbBr3, a two-dimensional frustrated honeycomb compound. Previous research suggests a quantum spin liquid ground state with plaquette fluctuations in YbBr3, warranting further investigation of its complex magnetic interactions. Using inelastic neutron scattering, we plan to examine YbBr3 single crystals at 0.6 K under magnetic fields of 0 T, 3 T, and 7 T. These measurements enable analysis of magnon dispersion and the effect of magnetic fields on a potential plaquette valence bond state or other quantum states. Our study will enrich the understanding of quantum phase transitions and magnetism in low-dimensional materials.
DOI: 10.15468/dl.fskagd
title: Occurrence Download

description: A dataset containing 1573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spialia sertorius",
 "HasCoordinate is true",
 "Geometry POLYGON ((6.224439 46.56151, 6.224439 48.43216, 8.984551 48.43216, 8.984551 46.56151, 6.224439 46.56151))",
 "Year is greater than or equal to 2020",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1573 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045228-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17492005
title: Data from 'Summer temperature maxima already challenge thermal capacities of coral in the Southern Persian/Arabian Gulf'

description: Corals have been found living in extreme environments such as the Persian/Arabian Gulf (PAG), the world’s warmest sea, represent a promising resource to study the phenotypic and genetic architecture of thermal tolerance in the coral holobiont. Here, we applied acute heat stress assays to coral populations in the southern PAG and neighbouring Gulf of Oman.  We found that although southern PAG coral exhibit the highest absolute thermal tolerance threshold measured thus far, they already experience baseline stress under the contemporary climate, suggesting little cushion space to tolerate further warming.

Data files provided:

NOAA_CW_NetCDF4_extracted.zip: Satellite-derived climatology data from CoRTAD version 6 (1982-2022; Saha et al. 2018) for thermal stress anomaly frequency standard deviation (TSA_freq_stdev), sea surface temperature anomaly frequency standard deviation (SSTA_freq_stdev), weekly SST, and maximum monthly mean (MMM; only 1985-2012; NetCDF4 file) were extracted using ‘cwsample’ from the NOAA Coastwatch Data Analysis Tool. 

NOAA_CW_ERDDAP.zip: SST and degree heating weeks (DHW) extracted using the NOAA CoastWatch ERDDAP GRIDDAP interface for all collection sites.

UW_colony_photos.zip: underwater photographs of sampled colonies taken as a size and morphology reference. Photo labels denote samplecollectiondate_region_site_species_colonynumber. 

CTD.zip: CTD data for each collection site.

Inputfile_PAG_site_parameters.txt: summarised CTD data for plotting.

General note: The colloquial site name of SI (Snoopy Island) is also referred to as AA (Al Aqah) in the main paper text.
DOI: 10.5281/zenodo.17492006
title: Data from 'Summer temperature maxima already challenge thermal capacities of coral in the Southern Persian/Arabian Gulf'

description: Corals have been found living in extreme environments such as the Persian/Arabian Gulf (PAG), the world’s warmest sea, represent a promising resource to study the phenotypic and genetic architecture of thermal tolerance in the coral holobiont. Here, we applied acute heat stress assays to coral populations in the southern PAG and neighbouring Gulf of Oman.  We found that although southern PAG coral exhibit the highest absolute thermal tolerance threshold measured thus far, they already experience baseline stress under the contemporary climate, suggesting little cushion space to tolerate further warming.

Data files provided:

NOAA_CW_NetCDF4_extracted.zip: Satellite-derived climatology data from CoRTAD version 6 (1982-2022; Saha et al. 2018) for thermal stress anomaly frequency standard deviation (TSA_freq_stdev), sea surface temperature anomaly frequency standard deviation (SSTA_freq_stdev), weekly SST, and maximum monthly mean (MMM; only 1985-2012; NetCDF4 file) were extracted using ‘cwsample’ from the NOAA Coastwatch Data Analysis Tool. 

NOAA_CW_ERDDAP.zip: SST and degree heating weeks (DHW) extracted using the NOAA CoastWatch ERDDAP GRIDDAP interface for all collection sites.

UW_colony_photos.zip: underwater photographs of sampled colonies taken as a size and morphology reference. Photo labels denote samplecollectiondate_region_site_species_colonynumber. 

CTD.zip: CTD data for each collection site.

Inputfile_PAG_site_parameters.txt: summarised CTD data for plotting.

General note: The colloquial site name of SI (Snoopy Island) is also referred to as AA (Al Aqah) in the main paper text.
DOI: 10.15468/dl.a3fe7c
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ipomoea procumbens"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045231-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5753n
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is one of (South Africa, Namibia, Botswana, Eswatini)",
 "OccurrenceStatus is Present",
 "TaxonKey is Gossypium herbaceum"
 ]
}

 The dataset includes 417 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045230-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8rm82
title: Occurrence Download

description: A dataset containing 8321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ciboria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8321 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045229-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76t5tb
title: Occurrence Download

description: A dataset containing 6879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aspidotis"
 ]
}

 The dataset includes 6879 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045233-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap5wdz
title: Occurrence Download

description: A dataset containing 2429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.71688578526175",
 "DecimalLongitude is less than 6.71994533844615",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2429 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045232-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xz748t
title: Occurrence Download

description: A dataset containing 1466 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-111.5688 28.19913, -111.4188 28.19913, -111.4188 28.34913, -111.5688 28.34913, -111.5688 28.19913))"
 ]
}

 The dataset includes 1466 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045235-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2tjqc
title: Occurrence Download

description: A dataset containing 6616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Astrolepis"
 ]
}

 The dataset includes 6616 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045237-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47mfpt
title: Occurrence Download

description: A dataset containing 2062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "DatasetKey is EOD – eBird Observation Dataset",
 "OccurrenceStatus is Present",
 "TaxonKey is Mimus polyglottos",
 "Year 2024-2024"
 ]
}

 The dataset includes 2062 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045238-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ke9ny
title: Occurrence Download

description: A dataset containing 17435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbesina encelioides",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17435 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045236-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9emtr
title: Occurrence Download

description: A dataset containing 2465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Macaca sylvanus"
 ]
}

 The dataset includes 2465 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045239-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yqz2u
title: Occurrence Download

description: A dataset containing 6441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Notholaena"
 ]
}

 The dataset includes 6441 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045241-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvzfe5
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scleromitrula",
 "HasCoordinate is true"
 ]
}

 The dataset includes 218 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045242-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/heha-0410
title: "Forest Change Detection "

description: "Forest change detection"