cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sdp4mw
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-65.55981 -47.8932,-65.55886 -47.87731,-65.56489 -47.86916,-65.6143 -47.85022,-65.62453 -47.82849,-65.62111 -47.79278,-65.87678 -47.765,-65.88435 -47.77242,-65.88452 -47.78882,-65.8681 -47.82269,-65.86151 -47.8656,-65.84369 -47.8949,-65.83398 -47.89368,-65.82129 -47.9046,-65.7688 -47.90747,-65.77551 -47.91089,-65.76239 -47.91559,-65.7926 -47.92981,-65.78699 -47.9455,-65.7652 -47.94928,-65.7995 -47.95129,-65.8045 -47.96008,-65.81702 -47.95612,-65.82837 -47.9635,-65.83508 -47.95752,-65.84198 -47.96051,-65.83679 -47.94598,-65.84113 -47.94092,-65.8598 -47.93738,-65.86713 -47.94141,-65.86249 -47.94757,-65.86859 -47.9483,-65.8739 -47.94537,-65.86871 -47.94049,-65.87311 -47.93573,-65.89807 -47.93158,-65.92059 -47.93689,-65.94238 -47.95581,-65.95178 -47.97559,-65.93958 -47.98761,-65.92529 -47.99011,-65.94287 -48.00378,-65.93323 -48.0174,-65.95441 -48.01501,-65.95709 -48.0191,-65.94122 -48.0307,-65.95258 -48.03168,-65.9942 -48.05902,-65.96729 -48.04852,-65.95477 -48.06622,-65.93958 -48.0752,-65.90039 -48.08032,-65.90619 -48.0863,-65.89441 -48.0907,-65.9057 -48.09338,-65.89258 -48.10138,-65.8996 -48.10449,-65.9057 -48.0946,-65.90961 -48.0993,-65.90417 -48.10358,-65.91803 -48.09692,-65.9176 -48.1051,-65.90808 -48.10529,-65.92493 -48.11603,-65.94049 -48.1123,-65.94281 -48.11737,-65.9361 -48.12128,-65.94061 -48.12183,-65.94928 -48.1203,-65.94409 -48.11328,-65.95441 -48.10217,-65.98077 -48.1001,-65.9906 -48.1087,-66.00873 -48.10339,-66.0304 -48.11151,-66.03009 -48.10529,-66.04498 -48.1048,-66.05731 -48.10919,-66.06207 -48.11951,-66.06628 -48.1109,-66.08081 -48.1098,-66.12091 -48.12311,-66.12921 -48.13348,-66.12201 -48.13971,-66.1391 -48.14038,-66.13409 -48.14819,-66.14398 -48.16498,-66.164 -48.17261,-66.16699 -48.17908,-66.15479 -48.18579,-66.15948 -48.19092,-66.22607 -48.2002,-66.25537 -48.2193,-66.26257 -48.23859,-66.33667 -48.27661,-66.36023 -48.31763,-66.34821 -48.34399,-66.33423 -48.34711,-66.33252 -48.35748,-66.34259 -48.36908,-66.35168 -48.36829,-66.34698 -48.36121,-66.35168 -48.35773,-66.35919 -48.36328,-66.3739 -48.35248,-66.4505 -48.35309,-66.4762 -48.3681,-66.47693 -48.37488,-66.46692 -48.38141,-66.47498 -48.3974,-66.46722 -48.40051,-66.48877 -48.40848,-66.48917 -48.41667,-66.22944 -48.42111,-66.18518 -48.39257,-66.16676 -48.34705,-66.15185 -48.33305,-66.06469 -48.29848,-66.02957 -48.27768,-65.9812 -48.27851,-65.92178 -48.23368,-65.85318 -48.21726,-65.8287 -48.20547,-65.7771 -48.17158,-65.73298 -48.11937,-65.72796 -48.09697,-65.74381 -48.06904,-65.68501 -48.05809,-65.66495 -48.03735,-65.61494 -48.01288,-65.59814 -47.98996,-65.55648 -47.96713,-65.55199 -47.95316,-65.56351 -47.9179,-65.55981 -47.8932)))",
 "EventDate is less than or equal to 2021-04-12"
 ]
}

 The dataset includes 1422 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250557-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4y7tx
title: Occurrence Download

description: A dataset containing 356591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-11.64551 35.03,0.74707 35.03,0.74707 38.54817,-11.64551 38.54817,-11.64551 35.03))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 356591 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287655-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m93omx
title: Occurrence Download

description: A dataset containing 2999535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 1990-2018"
 ]
}

 The dataset includes 2999535 records from 761 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007143-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psixnp
title: Occurrence Download

description: A dataset containing 24059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-26.36719 68.39918,-20.74219 30.14513,42.53906 30.14513,48.16406 71.07406,-26.36719 68.39918))",
 "TaxonKey is Eptesicus serotinus (Schreber, 1774)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24059 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010035-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ad7yqq
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prostanthera magnifica C.A.Gardner"
 ]
}

 The dataset includes 222 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250572-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7ypt9
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Cyclocarya paliurus (Batalin) Iljinsk."
 ]
}

 The dataset includes 357 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314157-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqtits
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenomys emilianus Thomas & St.Leger, 1926",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007143-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wwd49
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Boa constrictor Linnaeus, 1758"
 ]
}

 The dataset includes 365 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010035-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.12413924
title: Additional file 4 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 4: Table S4. GO enrichment for all DEPs in cellular components.
DOI: 10.6084/m9.figshare.19395741.v1
title: Additional file 3 of Urinary metabolomics reveals the biological characteristics of early pregnancy in pigs

description: Additional file 3. Table S3. Metabolites identified at high confidence level.
DOI: 10.6084/m9.figshare.12413924.v1
title: Additional file 4 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 4: Table S4. GO enrichment for all DEPs in cellular components.
DOI: 10.6084/m9.figshare.12413930
title: Additional file 4 of Identification and characterization of male reproduction-related genes in pig (Sus scrofa) using transcriptome analysis

description: Additional file 4: Table S10. Testis-specific transcripts in pig.
DOI: 10.6084/m9.figshare.12413930.v1
title: Additional file 4 of Identification and characterization of male reproduction-related genes in pig (Sus scrofa) using transcriptome analysis

description: Additional file 4: Table S10. Testis-specific transcripts in pig.
DOI: 10.6084/m9.figshare.12413933
title: Additional file 5 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 5: Table S5. KEGG enrichment for all DEPs.
DOI: 10.6084/m9.figshare.12413933.v1
title: Additional file 5 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 5: Table S5. KEGG enrichment for all DEPs.
DOI: 10.6084/m9.figshare.12413936
title: Additional file 6 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 6: Table S6. The primers used in the construction of OsGAPB overexpression.
DOI: 10.6084/m9.figshare.12413936.v1
title: Additional file 6 of Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance

description: Additional file 6: Table S6. The primers used in the construction of OsGAPB overexpression.
DOI: 10.5281/zenodo.10672692
title: IODP Expedition 393 Hole summary

description: Report lists hole data: location, water depth, drilling, coring system, and core recovery.
DOI: 10.5281/zenodo.10672693
title: IODP Expedition 393 Hole summary

description: Report lists hole data: location, water depth, drilling, coring system, and core recovery.
DOI: 10.6084/m9.figshare.12413939
title: Additional file 1 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 1: Supplemental Data 1. Raw data for Fig. 2: The temperature and daylength during 2016–2018.
DOI: 10.6084/m9.figshare.12413939.v1
title: Additional file 1 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 1: Supplemental Data 1. Raw data for Fig. 2: The temperature and daylength during 2016–2018.
DOI: 10.6084/m9.figshare.12413945
title: Additional file 2 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 2: Supplemental Data 2. Raw data for Fig. 4: Seed setting rates in the first year’s sterility test of 625 DH lines in both sowings during 2016–2018.
DOI: 10.6084/m9.figshare.12413945.v1
title: Additional file 2 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 2: Supplemental Data 2. Raw data for Fig. 4: Seed setting rates in the first year’s sterility test of 625 DH lines in both sowings during 2016–2018.
DOI: 10.6084/m9.figshare.12413951
title: Additional file 3 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 3: Supplemental Data 3. Raw data for Fig. 5: The seed setting rates of ten elite lines in ten sowings of 2017/2018 season.
DOI: 10.6084/m9.figshare.12413951.v1
title: Additional file 3 of Development of thermo-photo sensitive genic male sterile lines in wheat using doubled haploid breeding

description: Additional file 3: Supplemental Data 3. Raw data for Fig. 5: The seed setting rates of ten elite lines in ten sowings of 2017/2018 season.
DOI: 10.6084/m9.figshare.11889669
title: Cenozoic growth of the Eastern Kunlun Range (northern Tibetan Plateau): evidence from sedimentary records in the southwest Qaidam Basin

description: The Cenozoic sedimentary infill of the Qaidam Basin in the northern Tibetan Plateau provide significant insights into the uplift history and the tectonic evolution of the basin-bounding mountain ranges. Along the SW basin margin, a continuous record is preserved in the ~3000-m-thick Cenozoic succession at the Changweitai area. An up-section switch from marginal and deep lacustrine sedimentation to lacustrine delta-alluvial fan deposition indicates progradation and increasingly basinward advance of sediment transportation systems. Provenance data from sandstone petrology, palaeocurrent analysis and zircon U-Pb geochronology suggest that the Eastern Kunlun Range has been consistently providing material to the SW Qaidam basin since the deposition of the upper Xiaganchaigou Formation, indicating its latest uplift episode prior to the Late Eocene (before 35.5 Ma). However, variation in depositional systems indicates a clear shift in sediment provenance between the deposition of the Xiayoushashan Formation and the Shangyoushashan Formation. We propose that the Cenozoic Eastern Kunlun Range experienced a northward encroachment of shortening into the Qaidam Basin. During the Early Miocene, extensive topographic growth of the Altyn Tagh Range caused by reactivation of the Altyn Tagh strike-slip fault, provided the main source of sediment for the western Qaidam basin. Subsequently, a new source for the basin was provided by the uplifting Qimen Tagh subrange since ~15 Ma.
DOI: 10.6084/m9.figshare.11889669.v1
title: Cenozoic growth of the Eastern Kunlun Range (northern Tibetan Plateau): evidence from sedimentary records in the southwest Qaidam Basin

description: The Cenozoic sedimentary infill of the Qaidam Basin in the northern Tibetan Plateau provide significant insights into the uplift history and the tectonic evolution of the basin-bounding mountain ranges. Along the SW basin margin, a continuous record is preserved in the ~3000-m-thick Cenozoic succession at the Changweitai area. An up-section switch from marginal and deep lacustrine sedimentation to lacustrine delta-alluvial fan deposition indicates progradation and increasingly basinward advance of sediment transportation systems. Provenance data from sandstone petrology, palaeocurrent analysis and zircon U-Pb geochronology suggest that the Eastern Kunlun Range has been consistently providing material to the SW Qaidam basin since the deposition of the upper Xiaganchaigou Formation, indicating its latest uplift episode prior to the Late Eocene (before 35.5 Ma). However, variation in depositional systems indicates a clear shift in sediment provenance between the deposition of the Xiayoushashan Formation and the Shangyoushashan Formation. We propose that the Cenozoic Eastern Kunlun Range experienced a northward encroachment of shortening into the Qaidam Basin. During the Early Miocene, extensive topographic growth of the Altyn Tagh Range caused by reactivation of the Altyn Tagh strike-slip fault, provided the main source of sediment for the western Qaidam basin. Subsequently, a new source for the basin was provided by the uplifting Qimen Tagh subrange since ~15 Ma.
DOI: 10.6084/m9.figshare.9792524
title: N<sup>6</sup>-methyladenosine-dependent primary microRNA-126 processing activated PI3K-AKT-mTOR pathway drove the development of pulmonary fibrosis induced by nanoscale carbon black particles in rats

description: The pulmonary fibrosis could be caused by long-term inhalation of carbon black (CB) particles. Studies on the mechanisms of pulmonary fibrosis induced by CB are required to develop the stratagem of prevention and treatment on fibrosis. The RNA-binding protein DiGeorge syndrome critical region gene 8 (DGCR8)-dependent pri-miRNAs processing is regulated by N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification, which targets the downstream signal pathway. However, its role in pulmonary fibrosis has not been known clearly. In the present study, rats inhaled CB at dose of 0, 5 or 30 mg/m<sup>3</sup> for 28 days, 6 h/day, respectively. The rats inhaled CB at dose of 0 or 30 mg/m<sup>3</sup> for 14 days, 28 days and 90 days, respectively. In vitro experiments, the normal human bronchial epithelial cell line (16HBE) was treated with CB (0, 50, 100 and 200 μg/mL) for 24 h. In vitro and vivo study, the levels of fibrosis indicators including α-SMA, vimentin, collagen-I and hydroxyproline in CB treatment groups statistically increased in dose- or time- dependent manners compared with the control. After CB treatment, PI3K-AKT-mTOR pathway was activated and regulated by miRNA-126. We found that both of m<sup>6</sup>A modifications of pri-miRNA-126 and its binding with DGCR8 were decreased after CB treatment, which resulted in the reduction of mature miRNA-126 accompanied by accumulation of unprocessed pri-miRNA-126. This work demonstrated that m<sup>6</sup>A modification of pri-miRNA-126 and its binding with DGCR8 decreases blocked miRNA-126 maturation, and then activated the PI3K/AKT/mTOR pathway, which drove the fibro genesis in the lung after CB exposure.
DOI: 10.6084/m9.figshare.9792524.v1
title: N<sup>6</sup>-methyladenosine-dependent primary microRNA-126 processing activated PI3K-AKT-mTOR pathway drove the development of pulmonary fibrosis induced by nanoscale carbon black particles in rats

description: The pulmonary fibrosis could be caused by long-term inhalation of carbon black (CB) particles. Studies on the mechanisms of pulmonary fibrosis induced by CB are required to develop the stratagem of prevention and treatment on fibrosis. The RNA-binding protein DiGeorge syndrome critical region gene 8 (DGCR8)-dependent pri-miRNAs processing is regulated by N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification, which targets the downstream signal pathway. However, its role in pulmonary fibrosis has not been known clearly. In the present study, rats inhaled CB at dose of 0, 5 or 30 mg/m<sup>3</sup> for 28 days, 6 h/day, respectively. The rats inhaled CB at dose of 0 or 30 mg/m<sup>3</sup> for 14 days, 28 days and 90 days, respectively. In vitro experiments, the normal human bronchial epithelial cell line (16HBE) was treated with CB (0, 50, 100 and 200 μg/mL) for 24 h. In vitro and vivo study, the levels of fibrosis indicators including α-SMA, vimentin, collagen-I and hydroxyproline in CB treatment groups statistically increased in dose- or time- dependent manners compared with the control. After CB treatment, PI3K-AKT-mTOR pathway was activated and regulated by miRNA-126. We found that both of m<sup>6</sup>A modifications of pri-miRNA-126 and its binding with DGCR8 were decreased after CB treatment, which resulted in the reduction of mature miRNA-126 accompanied by accumulation of unprocessed pri-miRNA-126. This work demonstrated that m<sup>6</sup>A modification of pri-miRNA-126 and its binding with DGCR8 decreases blocked miRNA-126 maturation, and then activated the PI3K/AKT/mTOR pathway, which drove the fibro genesis in the lung after CB exposure.
DOI: 10.6084/m9.figshare.20278290
title: Exploring the rumen microbial community in Guizhou White goats at different ages

description: ABSTRACT This study evaluated the changes in rumen microbiome during the process of age development of farming Guizhou White goats from Southwest China. We conducted high-throughput 16S rRNA gene sequencing to investigate the diversity, structure, and composition of goat rumen microbiota (RM) of 21 goats of different age groups (1, 6, and 12 months). We found that volatile fatty acids (i.e., acetate, propionate, and butyrate) fermented by microbes were found to increase significantly in the six- and one-month-old goats. Results of the genera abundance analysis showed that abundance of eight and seven taxa decreased in six- and one-month-old goats, respectively, compared with that in 12-month-old goats. Additionally, differences in six taxa in six-month-old goats and in one taxon in one-month-old goats were found. In addition, specific gut microbiome was found, which was significantly correlated with rumen fermentation parameters in Guizhou White goats. These results revealed the signature microbiota in RM during various developmental stages in goats raised in Southwest China and can also provide a guiding tool for evaluating rumen health of ruminants worldwide.
DOI: 10.6084/m9.figshare.20278290.v1
title: Exploring the rumen microbial community in Guizhou White goats at different ages

description: ABSTRACT This study evaluated the changes in rumen microbiome during the process of age development of farming Guizhou White goats from Southwest China. We conducted high-throughput 16S rRNA gene sequencing to investigate the diversity, structure, and composition of goat rumen microbiota (RM) of 21 goats of different age groups (1, 6, and 12 months). We found that volatile fatty acids (i.e., acetate, propionate, and butyrate) fermented by microbes were found to increase significantly in the six- and one-month-old goats. Results of the genera abundance analysis showed that abundance of eight and seven taxa decreased in six- and one-month-old goats, respectively, compared with that in 12-month-old goats. Additionally, differences in six taxa in six-month-old goats and in one taxon in one-month-old goats were found. In addition, specific gut microbiome was found, which was significantly correlated with rumen fermentation parameters in Guizhou White goats. These results revealed the signature microbiota in RM during various developmental stages in goats raised in Southwest China and can also provide a guiding tool for evaluating rumen health of ruminants worldwide.
DOI: 10.6084/m9.figshare.7171130
title: Additional file 11: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S7. The interaction between miRNAs and lncRNA data identified in tilapia. (XLSX 575 kb)
DOI: 10.5281/zenodo.10672690
title: IODP Expedition 393 Hole drilling summary

description: Report includes detailed drilling data: BHA length, bit parameters, and primary depth measurements.
DOI: 10.5281/zenodo.10672691
title: IODP Expedition 393 Hole drilling summary

description: Report includes detailed drilling data: BHA length, bit parameters, and primary depth measurements.
DOI: 10.6084/m9.figshare.7171130.v1
title: Additional file 11: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S7. The interaction between miRNAs and lncRNA data identified in tilapia. (XLSX 575 kb)
DOI: 10.6084/m9.figshare.15035457
title: Approximately 1M sample points on projection plane for each map projection

description: Root link of the proposed FWD-GCA-based metric: 10.6084/m9.figshare.15020151.<br><br>Approximately 1 million sample points projection plane for all map projection we studied. It is used to plot distributions and contours of traditional differential-based (10.6084/m9.figshare.15022074), GCA and the proposed FWD-GCA (10.6084/m9.figshare.15022092) metrics.<br>Unzip all zip files to a folder named 'points_1M', and use codes in 10.6084/m9.figshare.15022095 to calculate and plot metrcis.<br>