cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17456942
title: CTG GPU Benchmark Pipeline: Transformer-Based Fetal Monitoring Models with Reproducible Python Scripts

description: 1. Overview

This repository provides a reproducible GPU benchmark pipeline for transformer-based fetal monitoring models using cardiotocography (CTG) data.It includes complete scripts for signal preprocessing, data segmentation, model training, and prediction scoring, enabling fair performance comparison across multiple deep learning architectures.

All data are anonymized.The codebase is optimized for GPU environments such as Google Colab, Kaggle Notebooks, or local CUDA setups, and can be executed interactively (via Jupyter) or automatically (via Python CLI).

2. Repository Contents








File
Type
Description




01_ExamData.csv
Raw Data file
Sample dataset containing fetal monitoring recordings with three synchronized channels: FHR (Fetal Heart Rate), UA (Uterine Activity), and AFM (Automatic Fetal Movement).


02_SplitData.ipynb
Jupyter Notebook
Preprocessing and segmentation notebook that splits the raw data into training, validation, and test sets.


19_GPU.ipynb
Jupyter Notebook
Interactive GPU training notebook for multiple time-series architectures (e.g., TSMixer, PatchTST, iTransformer, TCN, ResNet1D). Computes performance metrics such as MAE, RMSE, and R².


ctg_gpu_benchmark_v3_full.py
Python script
Fully automated pipeline script for command-line execution. Handles model selection, dataset loading, GPU training loops, and output storage.


_scored_output.xlsx
Data file
Contains model predictions and ground-truth values on the test set for subsequent statistical analysis and figure generation.






3. Usage Notes

Dependencies:





Python ≥ 3.10




PyTorch ≥ 2.1




scikit-learn, pandas, numpy, matplotlib, tqdm




GPU with CUDA support recommended



Suggested Execution Order:1️⃣ 01_ExamData.csv → raw data from NST signals2️⃣ 02_SplitData.ipynb → preprocessing & segmentation3️⃣ 19_GPU.ipynb → model training (interactive mode)4️⃣ ctg_gpu_benchmark_v3_full.py → automated benchmark5️⃣ _scored_output.xlsx → source dataset

License & Citation:This dataset and code package are released for academic and research use.When referencing, please cite as:



Karataş S. et al., “CTG GPU Benchmark Pipeline: Transformer-Based Fetal Monitoring Models with Reproducible Python Scripts,” Zenodo (2025). DOI: https://doi.org/10.5281/zenodo.17456942


4. Purpose

The goal of this project is to establish a transparent and reproducible benchmark for deep learning models applied to fetal cardiotocography (CTG).By standardizing preprocessing, segmentation, and evaluation procedures, this pipeline enables objective performance comparison across transformer and classical time-series models, supporting future research in clinical fetal health prediction and perinatal data science.

5. Keywords

Cardiotocography, Fetal Monitoring, Transformer Models, Deep Learning, GPU Benchmark, Reproducibility, Python, Time-Series Analysis
DOI: 10.5281/zenodo.17457613
title: UHT-EPR Bispectrum simulation documents

description: Core Claim: UHT + ER=EPR predicts detectable non-Gaussianity in the CMB bispectrum via entangled horizon modes — ΛCDM predicts none.

UHT beats ΛCDM on CMB non-Gaussianity with code, stats, and visuals.

Executable, reproducible, peer-review-ready kill-shot.
DOI: 10.5281/zenodo.17457612
title: UHT-EPR Bispectrum simulation documents

description: Core Claim: UHT + ER=EPR predicts detectable non-Gaussianity in the CMB bispectrum via entangled horizon modes — ΛCDM predicts none.

UHT beats ΛCDM on CMB non-Gaussianity with code, stats, and visuals.

Executable, reproducible, peer-review-ready kill-shot.
DOI: 10.15468/dl.tt4p6y
title: Occurrence Download

description: A dataset containing 951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Litchi chinensis",
 "Year 1981-2022"
 ]
}

 The dataset includes 951 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003090-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/wbf-j79-bmd
title: Graptoloidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.21985/n2-f1sp-xy29
title: S3: Knowledge Grgaph Descriptive Statistics
DOI: 10.3535/w39-4v5-zq7
title: Schorl

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/691-8l9-kxs
title: Verdelite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.30456047
title: <b>Drosophila UBE3A Regulates Substrates Associated with Gliopathic Seizures Through Direct Ubiquitination of Translation Initiation and Ubiquitin Proteasome Proteins</b> - RAW DATA and SUPPLEMENTAL TABLES

description: This Figshare repository contains all supporting materials associated with the manuscript, including supplemental tables listing all Drosophila lines tested, complete LC-MS/MS datasets from each GAL4-specific UBAIT experiment, and a comprehensive inventory of all plasmids and vectors generated in this study. The repository also includes raw and processed Western blot data, with original image files labeled for clarity, along with corresponding densitometry measurements and statistical analyses provided in both Excel and GraphPad Prism formats.
DOI: 10.6084/m9.figshare.30456047.v1
title: <b>Drosophila UBE3A Regulates Substrates Associated with Gliopathic Seizures Through Direct Ubiquitination of Translation Initiation and Ubiquitin Proteasome Proteins</b> - RAW DATA and SUPPLEMENTAL TABLES

description: This Figshare repository contains all supporting materials associated with the manuscript, including supplemental tables listing all Drosophila lines tested, complete LC-MS/MS datasets from each GAL4-specific UBAIT experiment, and a comprehensive inventory of all plasmids and vectors generated in this study. The repository also includes raw and processed Western blot data, with original image files labeled for clarity, along with corresponding densitometry measurements and statistical analyses provided in both Excel and GraphPad Prism formats.
DOI: 10.6084/m9.figshare.30456047.v2
title: <b>Drosophila UBE3A Regulates Substrates Associated with Gliopathic Seizures Through Direct Ubiquitination of Translation Initiation and Ubiquitin Proteasome Proteins</b> - RAW DATA and SUPPLEMENTAL TABLES

description: This Figshare repository contains all supporting materials associated with the manuscript, including supplemental tables listing all Drosophila lines tested, complete LC-MS/MS datasets from each GAL4-specific UBAIT experiment, and a comprehensive inventory of all plasmids and vectors generated in this study. The repository also includes raw and processed Western blot data, with original image files labeled for clarity, along with corresponding densitometry measurements and statistical analyses provided in both Excel and GraphPad Prism formats.
DOI: 10.3535/p14-6zb-da1
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/est-wmf-dcf
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7g1-m9m-zyp
title: Vivianite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hcn-7wk-sm7
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.4jrp9p
title: Occurrence Download

description: A dataset containing 19291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cocos nucifera",
 "Year 1981-2022"
 ]
}

 The dataset includes 19291 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003093-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/718-q2z-3nx
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4ft-x3e-bk7
title: Receptaculites Deshayes in Bory de St.-Vincent, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jwh-0sr-vhx
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n4n-ppa-hnh
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/myb-bqj-w0k
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.14860597
title: Polysome profiling of yeast, RNA samples (rRNA-depleted)

description: mRNAs associate with single or multiple ribosomes; these ribosomal assemblies—monosomes and polysomes—translate the mRNAs before degradation. The impact of heat stress on this mRNA turnover remains unclear. We show that in heat-shocked yeast cells, the proportion of monosomes increases without a corresponding rise in the number of associated mRNAs. Consequently, most monosomes are devoid of mRNAs and silent, lacking translational initiation factors and proteins facilitating posttranslational folding. Such silent monosomes also appear under other stress conditions, with proportions varying according to stress type, suggesting that they represent a general feature of cellular adaptation. In parallel with the induction of silent ribosomes, elevated temperatures reduce the overall rate of mRNA-ribosome association with few exceptions. Notably, heat shock promotes the ribosomal association of transcripts encoding heat shock proteins, without extension of the half-lives of these mRNAs. These mechanisms dynamically reorganize mRNA turnover to prioritize the translation of heat shock proteins over other proteins.
DOI: 10.5281/zenodo.14860596
title: Polysome profiling of yeast, RNA samples (rRNA-depleted)

description: mRNAs associate with single or multiple ribosomes; these ribosomal assemblies—monosomes and polysomes—translate the mRNAs before degradation. The impact of heat stress on this mRNA turnover remains unclear. We show that in heat-shocked yeast cells, the proportion of monosomes increases without a corresponding rise in the number of associated mRNAs. Consequently, most monosomes are devoid of mRNAs and silent, lacking translational initiation factors and proteins facilitating posttranslational folding. Such silent monosomes also appear under other stress conditions, with proportions varying according to stress type, suggesting that they represent a general feature of cellular adaptation. In parallel with the induction of silent ribosomes, elevated temperatures reduce the overall rate of mRNA-ribosome association with few exceptions. Notably, heat shock promotes the ribosomal association of transcripts encoding heat shock proteins, without extension of the half-lives of these mRNAs. These mechanisms dynamically reorganize mRNA turnover to prioritize the translation of heat shock proteins over other proteins.
DOI: 10.3535/88f-xqb-z36
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a0j-2m2-ycp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.x8bjnx
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alnus nepalensis",
 "Year 1981-2022"
 ]
}

 The dataset includes 307 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003094-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kd9lw
title: CCDC 2365318: Experimental Crystal Structure Determination

description: Related Article: Chen Yuxin, Ling Yanni, Yao Yuqing, Wang Keyi, Li Linna, Zhang Xin, Wang Qin, Li Hongdao, Wang Wenmin|2025|Wuji Huaxue Xuebao|41|1141|doi:10.11862/CJIC.20240258
description: Related Article: Yu-Xin Chen|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nqj97
title: CCDC 2464509: Experimental Crystal Structure Determination

description: Related Article: Subhodeep Das, Supriyo Das, Sk Abdur Rahaman, Sourav Mandal, Ranjan Jana|2025|Green Chemistry|27|13268|doi:10.1039/d5gc04556h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.yak4cp
title: Occurrence Download

description: A dataset containing 53855 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Saint Vincent and the Grenadines, Grenada)"
 ]
}

 The dataset includes 53855 records from 439 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003082-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jhh-sxg-yhs
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25549/independent-c69-15470
title: On the public hearings... on the LA Charter, 1970-04

description: Section 7: Detailed report to the Charter and Administrative Code Committee: on the public hearings held by the Committee on the report of the Los Angeles City Charter Commission. Los Angeles, California: Los Angeles City Charter Commission, 1970 April.
DOI: 10.15468/dl.z4hdja
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panthera Oken, 1816",
 "DatasetKey is CAS Mammalogy (MAM)"
 ]
}

 The dataset includes 90 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001002-150211104439307/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-15441
title: On the public hearings... on the LA Charter, 1970-04

description: Section 7: Detailed report to the Charter and Administrative Code Committee: on the public hearings held by the Committee on the report of the Los Angeles City Charter Commission. Los Angeles, California: Los Angeles City Charter Commission, 1970 April.
DOI: 10.15468/dl.fstdup
title: Occurrence Download

description: A dataset containing 422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asimina triloba (L.) Dunal",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 422 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001002-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-15442
title: On the public hearings... on the LA Charter, 1970-04

description: Section 7: Detailed report to the Charter and Administrative Code Committee: on the public hearings held by the Committee on the report of the Los Angeles City Charter Commission. Los Angeles, California: Los Angeles City Charter Commission, 1970 April.
DOI: 10.15468/dl.es792j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuariiformes",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182018-230224095556074/datasets/export for details.
DOI: 10.15468/dl.fcedoa
title: Occurrence Download

description: A dataset containing 862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea triloba L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 862 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001002-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-14999
title: Legal research regarding the history of the Los Angeles charter, 1850-1990 (3a of 3)

description: Xandra Kayden. The Los Angeles past as it approaches the future: Policy Clinic report. Claremont, California: The Claremont Graduate School, The Center for Politics and Policy, Spring 1990. PART OF A SERIES: A critical component of the Commission's investigation centered on the idea that governance of the LAPD was shared between the Office of the Chief of Police, an administrative body, and the Board of Police Commissioners, a citizen body. To better understand the dynamic between these two entities, the staff of Heller, Ehrman, White, & McAuliffe researched the history of the Los Angeles City Charter, focusing primarily on its provisions regarding the distribution of power and the structure and organization of the LAPD. Included in the series are reproductions of reports, dissertations, article clippings, excerpts from city documents, and charter amendments related to the charter's conception and development over time. The series also includes several summaries of expert witness interviews regarding the effectiveness of this structure.
DOI: 10.15468/dl.hga7qa
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditassa oberdanii Fontella & M.C.Alvarez"
 ]
}

 The dataset includes 19 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182025-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-15668
title: Memoranda interviews: Reinhardt, Stephen, 1991-05-31 - 1991-06-05

description: Memoranda interviews: Reinhardt, Stephen, 1991 May 31 - June 5. PART OF A SERIES: A critical component of the Commission's investigation centered on the idea that governance of the LAPD was shared between the Office of the Chief of Police, an administrative body, and the Board of Police Commissioners, a citizen body. To better understand the dynamic between these two entities, the staff of Heller, Ehrman, White, & McAuliffe researched the history of the Los Angeles City Charter, focusing primarily on its provisions regarding the distribution of power and the structure and organization of the LAPD. Included in the series are reproductions of reports, dissertations, article clippings, excerpts from city documents, and charter amendments related to the charter's conception and development over time. The series also includes several summaries of expert witness interviews regarding the effectiveness of this structure.
DOI: 10.15468/dl.ymwofx
title: Occurrence Download

description: A dataset containing 2116 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Collection entomologique Pierre Lachiver"
 ]
}

 The dataset includes 2116 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001002-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-20823
title: Miscellaneous correspondence, 1991 Apr. 3 - July 12

description: Miscellaneous correspondence, 1991 April 3 - July 12. PART OF A SERIES: Jones, Day, Reavis & Pogue investigated how LAPD administrators respond to personnel complaints and allegations of misconduct. Materials in the series were collected and analyzed by the firm for this purpose, and include summaries of witness interviews; article clippings discussing instances of alleged police misconduct; source materials related to the LAPD’s use-of-force policies; a transcript of a court case involving officer misconduct; summaries of personnel complaint statistics; and excerpts taken from the personnel files of officers with multiple complaints and misconduct charges. Also included is correspondence sent and received by the firm over the course of its investigation.
DOI: 10.15468/dl.qrw7ts
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditassa linearis Mart."
 ]
}

 The dataset includes 335 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182015-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgb6hm
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neofelis nebulosa (Griffith, 1821)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001002-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-20429
title: Background investigations (3 of 4), 1989 Dec. 6 - 1991 June 16

description: Background investigations (3 of 4), 1989 December 6 - 1991 June 16. PART OF A SERIES: The circumstances surrounding the beating of Rodney King led many to believe that the incident was racially motivated and reflected a spirit of bias and discrimination within the LAPD. Irell & Manella analyzed in depth the LAPD's recruitment, hiring, training, and promotion practices to determine if bias and intolerance were in fact pervasive issues within the Department. The series includes materials related to Irell and Manella's work product, including the firm’s correspondence; summaries of personnel files for potential recruits; records of the Leon Panduro case, in which a citizen was shot by a probationary officer; minutes from the LAPD Professional Advisory Committee maintained between 1983 and 1991; witness files, which consist of written testimony and supplemental materials; and notes, outlines, and drafts maintained over the course of Irell and Manella’s investigation.
DOI: 10.15468/dl.khn83k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rheiformes",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182026-230224095556074/datasets/export for details.