cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc50hc0
title: CCDC 149431: Experimental Crystal Structure Determination

description: Related Article: A.Volonterio, P.Bravo, E.Corradi, G.Fronza, S.V.Meille, B.Vergani, M.Zanda|2001|J.Fluorine Chem.|108|245|doi:10.1016/S0022-1139(01)00363-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqg62f
title: CCDC 669044: Experimental Crystal Structure Determination

description: Related Article: Wei-Qiong Du, Jian-Min Zhang, Ran Wu, Qin Liang, Shi-Zheng Zhu|2008|J.Fluorine Chem.|129|695|doi:10.1016/j.jfluchem.2008.06.015
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccsgjb2
title: CCDC 728944: Experimental Crystal Structure Determination

description: Related Article: M.Bakir, R.R.Conry, O.Green|2009|J.Mol.Struct.|921|51|doi:10.1016/j.molstruc.2008.12.018
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.23942.09287
title: Genomic profiles of Pseudomonas aeruginosa gene clusters based on profile HMMs, reveal novel therapeutic targets for clinical intervention Michael Ambutsi1* and Patrick Okoth2
DOI: 10.13140/rg.2.2.20334.33602
title: Jan 2021 Atlantic Follow-up on Rayleigh-Taylor instabilities in Atmospheric Circulation. Diego Fdez-Sevilla PhD
DOI: 10.15468/dl.jrnu9p
title: Occurrence Download

description: A dataset containing 30951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-27.20894 38.82358,-27.27513 38.82011,-27.36043 38.81317,-27.39544 38.75214,-27.39289 38.69304,-27.34579 38.64881,-27.25286 38.62544,-27.15356 38.62096,-27.08418 38.62992,-27.02816 38.6826,-27.01352 38.74221,-27.0689 38.77894,-27.20894 38.82358))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 30951 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008689-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24414/rob-euref-npaz00srb
title: GNSS data of NPAZ00SRB, Novi Pazar, Serbia

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.5281/zenodo.15112951
title: Robust conformational space exploration of cyclic peptides by combining different MD protocols and force fields

description: REMD and ST molecular dynamics simulation trajectories of nine cyclic peptides. Data and scripts for the article Murail et al. (2025) "Robust conformational space exploration of cyclic peptides by combining different MD protocols and force fields".
DOI: 10.3886/e193942
title: Data and Code for: Effective Health Aid: Evidence from Gavi’s Vaccine Program

description: Gavi, the Vaccine Alliance has
provided over US$16 billion in funding for vaccination expansion in low- and
middle-income countries since its founding in 1999. We exploit differential
timing in Gavi support across countries and vaccines to estimate the effects of
this large-scale public health initiative. We find that Gavi’s support for a
vaccine increased coverage rates by 2 – 5 percentage points across all
vaccines, on average, and by 10 – 20 percentage points for newer vaccines. We
also find that Gavi’s support for a vaccine reduced child mortality from
related causes by 1 child per 1,000 live births. We estimate these improvements
saved around 1.6 million lives at a notably low cost of US$8,750 per life saved.
DOI: 10.3886/e193942v1-174261
title: Data and Code for: Effective Health Aid: Evidence from Gavi’s Vaccine Program

description: Gavi, the Vaccine Alliance has
provided over US$16 billion in funding for vaccination expansion in low- and
middle-income countries since its founding in 1999. We exploit differential
timing in Gavi support across countries and vaccines to estimate the effects of
this large-scale public health initiative. We find that Gavi’s support for a
vaccine increased coverage rates by 2 – 5 percentage points across all
vaccines, on average, and by 10 – 20 percentage points for newer vaccines. We
also find that Gavi’s support for a vaccine reduced child mortality from
related causes by 1 child per 1,000 live births. We estimate these improvements
saved around 1.6 million lives at a notably low cost of US$8,750 per life saved.
DOI: 10.15468/dl.r3gsxz
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emerita austroafricana Schmitt, 1937)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008691-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26617552.v1
title: Additional file 2 of Analysis of genetic diversity and genome-wide association study for drought tolerance related traits in Iranian bread wheat

description: Additional file 2.
DOI: 10.6084/m9.figshare.26576327
title: Additional file 3 of Mosquito diversity (Diptera: Culicidae) and medical importance in four Cambodian forests

description: Additional file 3: Table S3 P-value of the Pearson correlation between the relative abundance of mosquito species with relative abundance ≥ 5.
DOI: 10.17632/hmc9w576pj.1
title: Another glimpse of the Coffea spp SH3 resistance genes

description: Coffea spp. SH3-RxCC-NBS-LRR resistance genes to the coffee leaf rust, including C. liberica whole gene proposed models, related peptides and primer sequences.
DOI: 10.6084/m9.figshare.26576324
title: Additional file 2 of Mosquito diversity (Diptera: Culicidae) and medical importance in four Cambodian forests

description: Additional file 2: Table S2 Pearson correlation between the relative abundance of mosquito species with relative abundance ≥ 5.
DOI: 10.6084/m9.figshare.26617210
title: Additional file 3 of The dynamics of deltamethrin resistance evolution in Aedes albopictus has an impact on fitness and dengue virus type-2 vectorial capacity

description: Additional file 3: Data S2. The structures of the mutant proteins I1532T performed in this study were optimized by MD simulation using AMBER16.
DOI: 10.6084/m9.figshare.26576327.v1
title: Additional file 3 of Mosquito diversity (Diptera: Culicidae) and medical importance in four Cambodian forests

description: Additional file 3: Table S3 P-value of the Pearson correlation between the relative abundance of mosquito species with relative abundance ≥ 5.
DOI: 10.6084/m9.figshare.26576378
title: Additional file 1 of GLUT1-DS Italian registry: past, present, and future: a useful tool for rare disorders

description: Additional file 1. Italian GLUT1-DS Registry dataset
DOI: 10.6084/m9.figshare.26617108
title: Additional file 1 of Preliminary insights into RNA in CSF of pediatric SMA patients after 6 months of nusinersen

description: Additional file 1. File excel composed by 4 sheets. Table S1. All DE. Differentially expressed cfRNAs in “all” SMA patients at T4 versus T0 nusinersen injection. Gene name, gene biotype and measured log2FC are reported for each transcript. Only transcripts with |log2(T4/T0l)|≥ 0.5 and a FDR ≤ 0.1 are shown. Table S2. Heterogeneous DE. Differentially expressed cfRNAs in “heterogeneous” SMA patients at T4 versus T0 nusinersen injection. Gene name, gene biotype and measured log2FC are reported for each transcript. Only transcripts with |log2(T4/T0l)|≥ 0.5 and a FDR ≤ 0.1 are sown. Table S3. Homogeneous DE. Differentially expressed cfRNAs in "homogeneous" SMA patients at T4 versus T0 nusinersen injection. Gene name, gene biotype and measured log2FC are reported for each transcript. Only transcripts with |log2(T4/T0l)|≥ 0.5 and a FDR ≤ 0.1 are shown. Table S4. Venn Results. Venn analysis of DE cfRNAs in “all”, “heterogeneous” and “homogeneous” groups.
DOI: 10.15468/dl.dpkeut
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.88379 -32.955386, 148.88379 -32.957632, 148.888281 -32.957632, 148.888281 -32.955386, 148.88379 -32.955386))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067971-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26709398
title: Additional file 1 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 1: Supplementary Table 1. Primers
DOI: 10.6084/m9.figshare.26709398.v1
title: Additional file 1 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 1: Supplementary Table 1. Primers
DOI: 10.6084/m9.figshare.26709404
title: Additional file 3 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 3: Supplementary Table 3. Identified miRNAs.
DOI: 10.6084/m9.figshare.26709404.v1
title: Additional file 3 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 3: Supplementary Table 3. Identified miRNAs.
DOI: 10.6084/m9.figshare.26709407
title: Additional file 4 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 4: Supplementary Table 4. Identified ATAC and CUT&Tag peaks.
DOI: 10.6084/m9.figshare.26709407.v1
title: Additional file 4 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 4: Supplementary Table 4. Identified ATAC and CUT&Tag peaks.
DOI: 10.6084/m9.figshare.26709410
title: Additional file 5 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 5: Supplementary Table 5. Identified transcription factors
DOI: 10.6084/m9.figshare.26709410.v1
title: Additional file 5 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 5: Supplementary Table 5. Identified transcription factors
DOI: 10.6084/m9.figshare.26709413
title: Additional file 6 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 6: Supplementary Table 6. Target genes.
DOI: 10.6084/m9.figshare.26709413.v1
title: Additional file 6 of Reciprocal negative feedback between Prrx1 and miR-140-3p regulates rapid chondrogenesis in the regenerating antler

description: Additional file 6: Supplementary Table 6. Target genes.
DOI: 10.6084/m9.figshare.26576357
title: Additional file 1 of Large-scale morphometry of the subarachnoid space of the optic nerve

description: Additional file 1: Figure S1. Fixation-generated spurious artifacts in the grayscale slices, featuring strong intensity gradients and creating manifolds in the CSF (left). Issue mitigation during image enhancement and image segmentation (right) of CSF (red). Figure S2. High-angle views from within the grayscale images (intensities mapped from translucent blue to opaque red) showing the multi-scale features of the ON SAS microstructure. Figure S3. Image cuts in the z-direction (top) and x-direction (bottom) of Dataset1. Extended CSF (green) is obtained by engulfing the ON SAS microstructure through a morphological closing operation. Figure S4. Circular sectors (red) in Dataset1 (top) and Dataset2 (bottom) where CSF volume and ON SAS area have been ignored due to the structural deformation occurred during the manipulation of the specimen. Movie S5. Slice-by-slice movies of trabecular thickness and trabecular separation of the ON SAS foreground, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S6. Overview movies of 3D rendering of opaque isosurfaces of trabecular thickness and trabecular separation at the ON SAS foreground/background interface, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S7. Closeup movies showing detailed morphometry of the microstructure in the ON SAS, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S8. Slice-by-slice movies of the stitched signals for both datasets, alongside with image segmentation of the ON SAS trabeculae (yellow) and CSF (red). Movie S9. Volume-rendered close-up of the stitched signal of Dataset1, following the CSF over the ON section.
DOI: 10.6084/m9.figshare.26576357.v1
title: Additional file 1 of Large-scale morphometry of the subarachnoid space of the optic nerve

description: Additional file 1: Figure S1. Fixation-generated spurious artifacts in the grayscale slices, featuring strong intensity gradients and creating manifolds in the CSF (left). Issue mitigation during image enhancement and image segmentation (right) of CSF (red). Figure S2. High-angle views from within the grayscale images (intensities mapped from translucent blue to opaque red) showing the multi-scale features of the ON SAS microstructure. Figure S3. Image cuts in the z-direction (top) and x-direction (bottom) of Dataset1. Extended CSF (green) is obtained by engulfing the ON SAS microstructure through a morphological closing operation. Figure S4. Circular sectors (red) in Dataset1 (top) and Dataset2 (bottom) where CSF volume and ON SAS area have been ignored due to the structural deformation occurred during the manipulation of the specimen. Movie S5. Slice-by-slice movies of trabecular thickness and trabecular separation of the ON SAS foreground, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S6. Overview movies of 3D rendering of opaque isosurfaces of trabecular thickness and trabecular separation at the ON SAS foreground/background interface, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S7. Closeup movies showing detailed morphometry of the microstructure in the ON SAS, both for Dataset1 and Dataset2. Blue corresponds to 2μm or less and red corresponds to 160μm. Movie S8. Slice-by-slice movies of the stitched signals for both datasets, alongside with image segmentation of the ON SAS trabeculae (yellow) and CSF (red). Movie S9. Volume-rendered close-up of the stitched signal of Dataset1, following the CSF over the ON section.
DOI: 10.6084/m9.figshare.26709461
title: Additional file 1 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26709461.v1
title: Additional file 1 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26709464
title: Additional file 2 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26709464.v1
title: Additional file 2 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26709467
title: Additional file 3 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26709467.v1
title: Additional file 3 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26709470
title: Additional file 4 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26709470.v1
title: Additional file 4 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26709473
title: Additional file 5 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26709473.v1
title: Additional file 5 of Altered microbiome of serum exosomes in patients with acute and chronic cholecystitis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26028958
title: Rising atmospheric carbon dioxide concentration increases gaps of rice yields between low and middle-to-high income countries

description: Including all codes and datasets in the Nature Food paper.
DOI: 10.6084/m9.figshare.26028958.v1
title: Rising atmospheric carbon dioxide concentration increases gaps of rice yields between low and middle-to-high income countries

description: Including all codes and datasets in the Nature Food paper.
DOI: 10.6084/m9.figshare.26132701
title: Coupled Nanopores for Single Molecule Detection

description: Source data for "Coupled Nanopores for Single Molecule Detection" and code for event characterization
DOI: 10.6084/m9.figshare.26132701.v1
title: Coupled Nanopores for Single Molecule Detection

description: Source data for "Coupled Nanopores for Single Molecule Detection" and code for event characterization
DOI: 10.15468/dl.kemsgq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.964639 -32.955386, 148.966884 -32.955386, 148.966884 -32.950895, 148.964639 -32.950895, 148.964639 -32.955386)), ((148.964639 -32.955386, 148.960147 -32.955386, 148.960147 -32.957632, 148.964639 -32.957632, 148.964639 -32.955386)), ((148.966884 -32.950895, 148.971376 -32.950895, 148.971376 -32.948649, 148.966884 -32.948649, 148.966884 -32.950895)), ((148.966884 -32.948649, 148.966884 -32.944157, 148.964639 -32.944157, 148.964639 -32.948649, 148.966884 -32.948649)), ((148.966884 -32.944157, 148.971376 -32.944157, 148.971376 -32.941912, 148.966884 -32.941912, 148.966884 -32.944157)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067972-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26046166
title: Substrate binding and inhibition mechanism of norepinephrine transporter

description: MD simulations was performed to validate the stability of the docking pose of radafaxine. The solvated MD system of NET complexed with radafaxine was constructed. Protonation states of residues were assigned as predicted by H++. All of the disulfide bonds in the structure were preserved. Then, the complex was inserted into 100 × 74 Å2 bilayers. The system was solvated in a TIP3P water box and neutralized with 0.15 M NaCl. The dimension of system was 100 × 74 × 100 Å3. The AMBER ff14SB and GAFF2 force field was used to simulate the protein and the small molecule, respectively. For the solvated system, a 5000-step energy minimization was performed to remove conflicts and overlaps between atoms. Then, the complex was equilibrated for 500 ps in a constant-volume ensemble to heat the system from 0 to 300 K, followed for 500 ps in a constant-pressure ensemble, specifically at 1 bar. During equilibration, a force constant of 20 kcal·mol−1·Å−2 as a harmonic constraint was applied to the complex. With the constraint released, a 100-ns MD simulation was performed in constant-pressure ensembles at 300 K with 2-fs timestep. The cut-off value of the van der Waals interactions was set to 10 Å. The particle mesh Ewald (PME) method was used to calculate the long-range electrostatic contributions. The SHAKE algorithm was used to restrain all of the bond lengths involving hydrogen atoms. The AMBER20 software package was employed to carry out MD simulation. After simulation, the cpptraj module of AmberTools20 was used to calculate root mean square deviations (RMSDs) of receptor and ligand, and the top clustered structure of the complex based RMSD calculation.
DOI: 10.6084/m9.figshare.26046166.v1
title: Substrate binding and inhibition mechanism of norepinephrine transporter

description: MD simulations was performed to validate the stability of the docking pose of radafaxine. The solvated MD system of NET complexed with radafaxine was constructed. Protonation states of residues were assigned as predicted by H++. All of the disulfide bonds in the structure were preserved. Then, the complex was inserted into 100 × 74 Å2 bilayers. The system was solvated in a TIP3P water box and neutralized with 0.15 M NaCl. The dimension of system was 100 × 74 × 100 Å3. The AMBER ff14SB and GAFF2 force field was used to simulate the protein and the small molecule, respectively. For the solvated system, a 5000-step energy minimization was performed to remove conflicts and overlaps between atoms. Then, the complex was equilibrated for 500 ps in a constant-volume ensemble to heat the system from 0 to 300 K, followed for 500 ps in a constant-pressure ensemble, specifically at 1 bar. During equilibration, a force constant of 20 kcal·mol−1·Å−2 as a harmonic constraint was applied to the complex. With the constraint released, a 100-ns MD simulation was performed in constant-pressure ensembles at 300 K with 2-fs timestep. The cut-off value of the van der Waals interactions was set to 10 Å. The particle mesh Ewald (PME) method was used to calculate the long-range electrostatic contributions. The SHAKE algorithm was used to restrain all of the bond lengths involving hydrogen atoms. The AMBER20 software package was employed to carry out MD simulation. After simulation, the cpptraj module of AmberTools20 was used to calculate root mean square deviations (RMSDs) of receptor and ligand, and the top clustered structure of the complex based RMSD calculation.
DOI: 10.6084/m9.figshare.26617576.v1
title: Additional file 1 of Improving diagnosis and prognosis of lung cancer using vision transformers: a scoping review

description: Appendix 1: List of included studies
DOI: 10.6084/m9.figshare.26617576
title: Additional file 1 of Improving diagnosis and prognosis of lung cancer using vision transformers: a scoping review

description: Appendix 1: List of included studies
DOI: 10.5281/zenodo.12803401
title: Moving eDNA surveys into crop protection: a case study on the application of cowpea associated pests monitoring

description: Custom reference database of the study "Moving eDNA surveys into crop protection: a case study on the application of cowpea associated pests monitoring".
DOI: 10.5281/zenodo.12803402
title: Moving eDNA surveys into crop protection: a case study on the application of cowpea associated pests monitoring

description: Custom reference database of the study "Moving eDNA surveys into crop protection: a case study on the application of cowpea associated pests monitoring".
DOI: 10.6084/m9.figshare.25425289
title: Structural Basis for a Best-in-Class Pol Helicase Small-Molecule Inhibitor Revealed by Cryo-EM

description: Two structure files (coordinates) of pol-theta helicase domain in complex with AB25583 inhibitors in tetramer and dimer forms.