cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ccnf88jtk3.1
title: Birds_traditional homegardens

description: This file is made up of three excel spreadsheets. The first corresponds to all the records of birds in the traditional-homegardens, the second to the attributes of the 15 traditional-homegardens studied, the third to the list of species and their classification by habitat preference and trophic guild.
DOI: 10.17632/d2yypjh2hr.1
title: Count and annotation table of field soybean cultures conditioned by Elice16Indures® biostimulator

description: We present RNA-seq datasets of control and Elice16Indures treated soybean plants cultivated in field conditions during the period 01/05/2020-20/07/2020. For RNA seq experiments six samples were collected from vegetative tissues two times during the vegetation cycle: before and in flowering after 48 hours of drone-exposure. Samples were sequenced by using Illumina NextSeq550 platform and transcriptome data were collected in count table and annotation table.
DOI: 10.17632/d9stzp3bnt.1
title: The effects of propolis on oxidative stress and lipid profile in experimentally-induced diabetes: a systematic review of preclinical evidence

description: Supplementary material from the review article
DOI: 10.17632/vdw3757cxv.3
title: Quantification of LGR5 expression relative intensity in porcine cochleae 

description: LGR5 expression relative intensity in porcine cochleae from E80, P0, P60, and P120 is collected at six different frequencies of 40 Hz, 100 Hz, 500 Hz, 1000 Hz, 10000 Hz, and 20000 Hz. 
To quantify the LGR5 expression, the LGR5 intensity of 10 individual cells from each subset of supporting cells including greater epithelial ridge/inner sulcus cells (GER/ISC), inner border cells (IBC), inner phalangeal cells (IPHC), inner and outer pillar cells (IPC, OPC),1st and 2nd Deiters’ cells (DC12), 3rd Deiters’ cells (DC3), and Hensen cells (HS) on surface view was measured via ImageJ and divided by the background intensity at 6 different frequencies. We divided the LGR5 intensity by the background to normalize the signal strength at different depths and positions, under the assumption that the background intensity i.e., autofluorescence should be equal in all cell locations in the organ of Cortis for an individual sample. A total of 16 cochleae (LGR5-H2B-GFP) were subject to quantification: 4 cochleae were taken from E80 pigs, 4 cochleae were taken from P0 pigs, 4 cochleae were taken from two P60 pigs, and 4 from P120 pigs.
DOI: 10.17632/jgmnzck69n.1
title: Corporate Flexibility in a Time of Crisis Code Files

description: Code used to produce results in the paper Corporate Flexibility in a Time of Crisis by John W. Barry, Murillo Campello.

https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3778789
DOI: 10.17632/6g3c3g6b9z.1
title: Data for: The distribution of clay minerals and their impact on diagenesis in Glen Torridon, Gale crater, Mars 

description: Spectral parameters calculated used for the publication "The distribution of clay minerals and their impact on diagenesis in Glen Torridon, Gale crater, Mars " by Amanda Rudolph et al., submitted to the Journal of Geophysical Research - Planets for the Glen Torridon special issue in 2021.

Contents:
- mastcam_spectra.zip: All Mastcam spectra used for parameters and spectral plots
- mcam_params_rbr.csv: Mastcam red to blue parameter values calculated in IDL. 
- mcam_params_longwvBC.csv: Mastcam parameter band center values.
- BD650_soils_names.txt: ChemCam 650 nm band depth values of soils - provided by Jeff Johnson
- BD650_rocks_names.txt: ChemCam 650 nm band depth values of rocks  - provided by Jeff Johnson
DOI: 10.17632/pw24c8ndk3.2
title: An optimized FusX assembly-based technique to introduce mitochondrial TC-to-TT variations

description: The SnapGene files for receiving plasmids (.dna) and the FusXTBE Builder Template (Excel file).
DOI: 10.17632/mxjt9nhgmj.1
title: Supplementary Acknowledgements Table

description: Supplementary Acknowledgements Table for "Rapid and parallel adaptive mutations in spike S1 drive clade success in SARS-CoV-2"- Kistler et al 2022, Cell Host and Microbe. This table contains information about the sequences used in this study, such as the authors and accession numbers.
DOI: 10.17632/jwc5d33wdp.1
title: Glutamine Synthetase Promoter Attenuation Modeling Data

description: The glutamine synthetase (GS) expression system is commonly used to ensure stable transgene integration and amplification in CHO host lines. Transfected cell populations are typically grown in the presence of the GS inhibitor, methionine sulfoximine (MSX), to further select for increased transgene copy number. However, high levels of GS activity produce excess glutamine. We hypothesized that attenuating the GS promoter while keeping the strong IgG promoter on the GS-IgG expression vector would result in a more efficient cellular metabolic phenotype. Herein, we characterized CHO cell lines expressing GS from either an attenuated promoter or an SV40 promoter and selected with/without MSX. CHO cells with the attenuated GS promoter had higher IgG specific productivity and lower glutamine production compared to cells with SV40-driven GS expression. Selection with MSX increased both specific productivity and glutamine production, regardless of GS promoter strength. 13C metabolic flux analysis (MFA) was performed to further assess metabolic differences between these cell lines. Interestingly, central carbon metabolism was unaltered by the attenuated GS promoter while the fate of glutamate and glutamine varied depending on promoter strength and selection conditions. This study highlights the ability to optimize the GS expression system to improve IgG production and reduce wasteful glutamine overflow, without significantly altering central metabolism. Additionally, a detailed supplementary analysis of two “lactate runaway” reactors provides insight into the poorly understood phenomenon of excess lactate production by some CHO cell cultures. 

This dataset contains all data used as inputs for the 13C MFA modeling as well as the final output fluxes from the 13C MFA modeling.
DOI: 10.17632/38c4kffmfp.2
title: data set Cross cultural article

description: The final dataset and Supplementtary tables regarding to research entitled "Gross motor skills trajectory variation between WEIRD and LMIC countries: A Cross-cultural study" are available.
DOI: 10.17632/g6t5hn39x4.1
title: Urban density-Sense of Community survey data

description: This data was used in the research that led to the doctoral dissertation "Dense but not crowded: Maintaining a sense of community in a world of increasing urban density" by Eric Douglas, available at  https://open.library.ubc.ca/soa/cIRcle/collections/ubctheses/24/items/1.0397248
DOI: 10.17632/mvzby6y72f.6
title: A RETROSPECTIVE OBSERVATIONAL COHORT STUDY OF PERIPROSTHETIC HIP INFECTION TREATED BY ONE STAGE METHOD INCLUDING CASES WITH BONE GRAFT RECONSTRUCTION

description: The hypothesis is that the effectiveness of the infected hip prosthesis revision surgery in a one stage time has a high success rate, even in cases with bone graft use.
DOI: 10.17632/rxy84mjwts.1
title: Sorgo1.0

description: Data sets of sorghum cultive
DOI: 10.17632/4f234mww6s.1
title: Climate Change Adaptation Innovation in the Water Sector in Africa: Dataset

description: Our data comprises of socioeconomic and sociopolitical indicators for African countries drawn from three credible sources. These indicators include patents as proxy for technological innovation; research and development activity; water stress; quality of institutions; education as proxy for absorptive capacity for innovation; trade openness as proxy for technology transmission mechanism; and income per capita as proxy for size. 

Consistent with the theory, data and literature, we use water-related climate change adaptation technological developments to examine the degree to which the vulnerability to climate change in the water sector is motivating these innovations. Using the pooled data for African countries between 1990 and 2016, we estimate the relationship between climate-induced vulnerability in the water sector and water-related innovations, controlling for country size and proxies for technology transfer environment, institutional and regulatory quality, knowledge base, and research and development activity.

We find evidence that countries most exposed to water stress are innovating at lower rates. Though counterintuitive, this result is explained by the fact that such vulnerable countries also tend to have little research and development infrastructure needed to develop the kind of high quality innovations that usually necessitates patenting. Our result suggests that African countries experiencing water stress may need to reconsider priorities in the design of water-related adaptation to climate change. We also find that a country’s knowledge base and openness to trade are important determinants of adaptation technologies in the water sector
DOI: 10.48370/ofd/f22lzn/ffl5bl
title: 649_1.S3Dm

description: :unav
DOI: 10.48370/ofd/f22lzn/xmm0s8
title: 649_2.S3Dm

description: :unav
DOI: 10.48370/ofd/f22lzn
title: Resinicium bicolor (Alb. Schwein.) Parmasto, 649

description: Fungarium Makromycetes
DOI: 10.17632/y7pcrp63yp.1
title: Dataset of brain functional connectome and its maturation in adolescents 

description: We provided the dataset of brain connectome matrices and their similarities measures to self and others longitudinally. The dataset can be used to replicate the results of the manuscript titled emerging uniqueness of the cingulo-opercular network precedes psychological distress in early adolescence. The functional connectome (whole-brain and 13 networks) matrices were calculated from the resting-state functional MRIs (rs-fMRIs). We collected rs-fMRI and Kessler's psychological distress scale (K10) of 66 adolescents longitudinally 8 times from 12 years of age every four months, 294 rs-fMRIs in total. The 300 regions of interest (ROIs) were defined using the Greene lab brain atlas. The functional connectome matrices were calculated as correlations between time series from any pair of ROIs extracted from pre-processed fMRIs. We further evaluated the uniqueness of a functional connectome as its ratio of self-similarity (from the same subject at a different time point) to the maximal, average, and median of similarity-to-others (from a given subject and any others at a different time point). This dataset could be potentially used to
1.	understand developmental changes in the functional brain connectivity,
2.	as a normal control database of functional connectome matrices,
3.	develop and validate connectome and network-related analysing methods.
DOI: 10.17632/x6pdydd6bb.1
title: Dataset entrepreneurship

description: Dataset on the nexus between entrepreneurial ecosystem and entrepreneurial Readiness among Indonesian vocational school students
DOI: 10.17632/6f62gtxjt3.2
title: Predicting dry matter intake in mid-lactation Holstein cows using point-in-time data streams available on dairy farms - Supplemental Files

description: Supplemental Files
DOI: 10.17632/3v2ztchthg.1
title: Nutrients enhance genotype and water responses in rainfed lowland rice in Lao PDR

description: This data set relates to the manuscript by Sengxua et al (2022) to be published in the new Elsevier journal Crop and Environment on 31 March 2022.

The manuscript explores nutrient responses in rainfed lowland rice, and the need to improve the soils to facilitate a more reliable fertilizer response. 

The experimental design comprised 20 on-farm Environments x 12 Treatments x 3 Replicates = 720. 

Environments comprised 2 Years x 2 Provinces x 5 Districts per Province = 20. 
Treatments comprised 2 Water x 2 Fertilizer x 3 Genotype = 12. 
There were 3 Replicates, with 3 Farms per District used as Replicates = 3. 

Years (Year): 1 = 2009, 2 = 2010. (Districts 1-10 are 2009, and Districts 11-20 are 2010). 
Provinces (Prov): 1 = Champassak (CPK), 2 = Savannakhet (SVK). (Districts 1-5 and 11-15 are CPK, and 6-10 and 16-20 are SVK). 
Districts 1-10  in 2009 were Nalak, Nakeo, Songnoy, Oupalard, Phonesavanh, Phintay, Nachan, Nadeua, Nongdeuan, Phorntarn; 
     (The same in 2010, except Songnoy was replaced by Houayyang, and Phonesavanh was replaced by Nasomvang).
Water (Water): 1 = Nil, 2 = supplementary watered
Fertilizer (Fert): 1 = Nil, 2 = NPK
Genotype (Geno): 1 = TDK, 2 = TSN, 3 = PNG
Replicate (Rep): 1, 2, 3

Tillers (m-2): Number of tillers per square metre
Panicles (m-2): Number of panicles per square metre
Fertiles (%): Percentage of panicles which had grain
Sterility (%): Percentage of spikelets which had no grain
Harvest index: Ratio of grain yield to dry matter
Dry matter (kg ha-1): Total dry matter at maturity in kilograms per hectare
Grain yield (kg ha-1): Grain yield at maturity in kilograms per hectare at 14% moisture

M = Missing data

See Sengxua et al. (2022). Nutrients enhance genotype and water responses in rainfed lowland rice in southern Lao PDR. Crop and Environment (in press).
DOI: 10.17632/xv5jwz3hhv.3
title: TCF7L2 dataset

description: TCF7L2 SNPs dataset
DOI: 10.17632/kysvwvcxmf.1
title: The dataset of Japanese patents and patents’ holding firms in green vehicle powertrains field

description: A Japanese patents dataset of the vehicle powertrain systems for hybrid electric vehicle (HEV), battery electric vehicle (BEV) and fuel cell electric vehicles (FCEV).
Identify green patents using patents’ IPC classification and keywords in description document (title and abstract).
Comparison tables of searching keywords and patents’ holding firms’ names between English and Japanese
DOI: 10.17632/r2bhkjsgkr.1
title: The Mediating Role of Work Engagement: A Survey Data on Organizational Citizenship Behavior

description: This data article shows investigative data to influence organizational effectiveness through factors that influence organizational citizenship behavior (OCB). The variables included in the dataset are Psychological Capital (PC), Transformational Leadership (TL), Work Engagement (WE), and Organizational Citizenship Behavior (OCB). The dataset includes details of 156 respondents based on a questionnaire survey of Client Counseling officers throughout Indonesia. In addition, the dataset in this article also contains the demographic profile of the respondents. Data was collected with the help of an online questionnaire which was carried out in 3 waves of data collection distributed to Supervision officers throughout Indonesia. The dataset in this article also applies multi-group analysis to validate the drivers of organizational citizenship behavior in doing work which is divided into men and women. This dataset can provide significant insights for future research regarding the importance of organizational citizenship behavior and the factors that can influence organizational citizenship behavior.
DOI: 10.17632/c768z7tjj9.1
title: Variations in Phytoplankton Primary Production Driven by the Pacific Decadal Oscillation Based on the Ocean Color Data in the East/Japan Sea, South Korea

description: The Pacific Decadal Oscillation (PDO) is a leading mode of sea surface temperature (SST) anomalies in the north Pacific. The PDO regime is a major factor not only for the physical properties of the ocean but also for fishery and water resources. However, only a few studies have examined the impact of the PDO on the marine ecosystem in the East/Japan Sea. Therefore, in this study, we investigated the relationship between the PDO and primary production (PP) and subsequent effects on the marine ecosystem in the East/Japan Sea using remotely sensed ocean color datasets from 1998 to 2018. The PDO index and SST showed a negative linear relationship in the East/Japan Sea during the study period (R2 = 0.6350, p < 0.01), while the PDO index and mixed layer depth (MLD) showed a positive linear relationship (R2 = 0.6443, p < 0.01). The annual PDO index and annual PP showed a strong positive linear relationship (R2 = 0.8251, p < 0.01), while the contribution of the small phytoplankton to the total annual PP (small phytoplankton contribution) and PDO index showed a negative linear relationship (R2 = 0.5818, p < 0.01). The shallower MLD during the negative PDO phase indicates that vertical mixing may be weakened due to the stronger stratification caused by the higher SST than observed during the positive PDO phase. Consequently, we hypothesized that weakened vertical mixing may reduce nutrient supply to the euphotic layer, providing environmental conditions that favor the growth of small-sized phytoplankton during the phases in which the PDO is negatively related to a shallower MLD. It is noteworthy that PDO-induced shoaling of the MLD was mainly observed in winter, which may influence the annual PP of the following year. This study shows that the annual PP in the East/Japan Sea can be largely affected through interactions among several environmental conditions during certain phases of the PDO regime, which subsequently affects potential fishery resources in the East/Japan Sea.
DOI: 10.17632/ftj28s7v9j.3
title: Source data related to blots (CTNNBL1 restricts HIV-1 replication by suppressing viral DNA integration into the cell genome)

description: Unprocessed data related to Fig.1,2,3,5,6,7 and Fig. S1,S3,S4,S5,S7
DOI: 10.17632/h2ptgh99p4.1
title: English Punjabi Aligned Nouns Dataset

description: Data-set consists of English-Punjabi Aligned data of Nouns.
DOI: 10.5281/zenodo.6351387
title: Results of the 3D detection of cracks in tested disc-shaped specimens

description: 3D images of fatigue crack obtained by laboratory tomography and synchrotron tomography within bi-disc specimens.
DOI: 10.17632/ywcpv6wwzr.1
title: Gene Expression Liver/BAT Cyp7b1ko warm cold

description: Custom gene expression panel for bile acid synthesis markers  and lipid metabolism Real-time quantitative PCR analysis of mouse liver and brwon adipose tissue
DOI: 10.17632/y5222c7cys.1
title: LDHU3_09.0700

description: Flagellum attachment zone protein 3 | FAZ3
Leishmania donovani (HU3 strain)
DOI: 10.17632/s7dsk553fh.1
title: Molecular arrangement and fringe identification and analysis from molecular dynamics (MAFIA-MD): A tool for analyzing the molecular structures formed during reactive molecular dynamics simulation of hydrocarbons

description: Reactive molecular dynamics (RMD) simulations are becoming popular, with the recent developments in high-performance and efficient computing architecture, for investigating fundamental physico-chemical behaviors of reacting species. Due to the complexity of hydrocarbon systems, characterization of molecules formed during RMD simulations of hydrocarbons can be very challenging for simulations involving a large number of molecules. The novel post-processing utility “MAFIA-MD” – an acronym for “Molecular Arrangement and Fringe Identification and Analysis from Molecular Dynamics” – presented in this manuscript can analyze and perform molecular characterization of a large number of RMD trajectory files (.XYZ files) simultaneously. The utility will be useful for analysis and chemical characterization of trajectories without the large bond information files. A graphical user interface (GUI) is developed for easy operation. The utility analyzes the existing cyclic structures in the domain and generates statistics of alicyclic and aromatic hydrocarbons based on the number of carbon atoms. Alongside the statistical analysis, the program also separates the constituent molecules and extracts their chemical information in terms of Simplified Molecular-Input Line-Entry System (SMILES) and Spatial Data File (.SDF)”. A methodology for calculating fringe spacing is also implemented in the code for validation of RMD simulation with High-Resolution Transmission Electron Microscopy (HRTEM) images.
DOI: 10.17632/c577gjy9t3.1
title: LDHU3_09.0780

description: ATP-dependent DNA helicase
Leishmania donovani (HU3 strain)
DOI: 10.17632/wsdwn58ddz.1
title: LDHU3_09.0710

description: leucine-rich repeat protein
Leishmania donovani (HU3 strain)
DOI: 10.17632/5jc47g29sy.1
title: LDHU3_09.0750

description: histidine phosphatase
Leishmania donovani (HU3 strain)
DOI: 10.17632/9b557ccg8d.1
title: LDHU3_09.0920

description: CPSF30 | cleavage and polyadenylation specificity factor 30 kDa subunit
Leishmania donovani (HU3 strain)
DOI: 10.17632/b793j45dd7.1
title: LDHU3_09.0940

description: ubiquitin ligase
Leishmania donovani (HU3 strain)
DOI: 10.17632/75vmhb3wbg.1
title: Tunisian Foreign Debt Data

description: Quarterly data of the Tunisian foreign debt and some other indicators (savings, exchange, current deficit, ...)
DOI: 10.17632/px7y6twdhs.1
title:  Hydro-Geochemical assessment in Sathankulam Region, Southern Tamilnadu: and it’s perspective of physico-chemical characterization and quality

description: Geochemical studies of groundwater were carried out in the sedimentary and metamorphic terrain area of the Sathankulam region, Thoothukudi district, Tamilnadu, India. The Geology of this study area is given. Average Physico-chemical analytical data, such as pH, EC, TDS, Cations, Na, K, Ca and Mg, Anions HCO3, SO4, Cl, NO3 of groundwater samples collected from open well and the bore well for this period of two seasons, such as, average pre-monsoon and post-monsoon. Were, tabulated. Various thematic GIS maps were generated by using the software ArcGIS-10.8. Interpretation techniques such as the Inverse Distance Weighting (IDW) method, was applied to obtain the spatial distribution of groundwater quality maps. All groundwater environmental data were processed and evaluated by using an HYCH program, which includes, Stuyfzand classification, USSL classification, Gibbs mechanism, Sodium Adsorption Ratio, RSC, PI, and Piper environment. Various thematic environmental spatial maps through ArcGIS-10.8 software were also generated for the HYCH output. Results obtained from HYCH output helps to estimate the water quality as good, bad, and satisfactory for domestic and irrigation or agriculture quality.
DOI: 10.17632/5m66xtv4wg.1
title: Safeguard DCL2-Dependent 22-nt siRNA Generation by DCL1 data

description: In plants, miRNAs and siRNAs are crucial for their growth and development via mediating post-transcriptional gene silencing. In wild-type Arabidopsis, DCL2-dependent 22-nt siRNAs are rare, whereas DCL1- and DCL4-dependent 21-nt miRNAs and siRNAs are highly abundant. DCL4 naturally inhibits DCL2 in producing abundant 22-nt siRNAs from endogenous transcripts, but whether DCL1 suppresses endogenous 22-nt siRNA production and the extent of the DCL1-mediated repression of DCL2 activity are still unknown. To address these issues, we used small sequencing technologies to investigate the potential mechanism for the critical roles of DCL1 and DCL4 in protecting plant growth from the disturbing of DCL2-dependent 22-nt siRNAs.
Arabidopsis mutants used in this study, dcl1-9 (CS3828) is in the Ler background, and the others are all in the Col-0 background, including dcl2-1 (SALK_064627.42.50.x), dcl4-2 (GABI_160G05), and dcl2-1 dcl4-2t (N66078; CS66078). Other double and triple mutants including dcl1-9 dcl2-1, dcl1-9 dcl4-2, and dcl1-9 dcl2-1 dcl4-2t were generated by genetic crossing.
Our data showed that DCL1 and DCL2 cleaved both miRNA precursors and coding transcript-derived double-stranded RNAs in Arabidopsis defective for both DCL1 and DCL4. In the dcl1 dcl4 double mutant, massive 22-nt siRNAs broke the RNA-decay safeguard were produced by endogenous protein-coding genes (genic siRNAs), of which NIA1, NIA2, DGAT3, and both SMXL4 and SMXL5 accumulated the abundance of 22-nt siRNAs up to 95%. These 22-nt genic siRNAs were likely loaded into AGO1 or AGO2 and further mediated gene translation repression. Thus, our results demonstrated that both DCL1 and DCL4 safeguard post-transcriptional gene silencing, preventing the production of DCL2-dependent 22-nt genic siRNAs from disturbing plant growth and development.