cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f75h7dg7
title: Mercury contamination in Annas hummingbirds

description: Heavy metal contamination (n=17 metals) of feather and tissue samples from live and deceased Anna's hummingbirds (Calypte anna) was evaluated. Feathers taken from live birds are low in sample weight, therefore a novel method was used in feather sample preparation. Feather samples were then analyzed utilizing an inductively coupled plasma mass spectrometry (ICP-MS) assay. In addition, ICP-MS was used to measure heavy metal concentrations in feather and tissue samples from salvaged hummingbird carcasses. Iron, zinc, selenium and mercury concentrations were most commonly elevated in body feathers from live birds with mercury being the metal most likely to be found in elevated concentrations. Because of this, we conducted additional analysis for mercury using atomic absorption spectometry, and this is the mercury data available in this dataset. A strong correlation between total mercury concentrations in feathers and in pectoral muscle was found suggesting that sampling feathers from live hummingbirds may prove a validated, useful, non-lethal sampling method for this species in the wild. These data support the following publication: Nicole A. Mikoni, Robert Poppenga, Joshua T. Ackerman, Janet Foley, Jenny Hazlehurst, Gthrum Purdin, Linda Aston, Sabine Hargrave, Karen Jelks, Lisa A. Tell, Trace element contamination in feather and tissue samples from Annas hummingbirds, Ecological Indicators, Volume 80, September 2017, Pages 96-105, https://doi.org/10.1016/j.ecolind.2017.04.053.
DOI: 10.18739/a2qr4nr6d
title: Beaver Pond Locations in Arctic Alaska, 1949 to 2020.

description: Beavers were not previously recognized as an Arctic species, and their engineering in the tundra is considered negligible. Recent findings suggest that beavers have moved into arctic tundra regions and are controlling surface water dynamics, which strongly influence permafrost and landscape stability. These data show beaver pond locations in the Alaska Arctic identified in aerial photography and satellite imagery. Black and white aerial photography is from 1949-55, color infrared aerial photography (AHAP) is from 1976-84, and high-resolution satellite imagery is from 2000-2020. The number of beaver ponds doubled in most areas of ~2003 and ~2017 images. Earlier stages of beaver engineering are evident in ~1980 imagery, and there is no evidence of beaver engineering in ~1952 imagery, consistent with observations from Indigenous communities describing the influx of beavers over the period.
DOI: 10.6084/m9.figshare.15038850
title: VTMaxHerp: a data set of Voluntary Thermal Maximum temperatures of amphibians and reptiles from two Brazilian hotspots

description: Herein we provide a dataset of 312 individual voluntary thermal maximum (VT<sub>Max</sub>) values, the maximum temperature tolerated by individuals before actively moving to a colder place, for 53 species of amphibians and reptiles of the Atlantic Forest and Cerrado savannas of southeastern South America
DOI: 10.6084/m9.figshare.12896729.v1
title: ExomeT2

description: Single Cell Exome
DOI: 10.5517/ccdc.csd.cc278680
title: CCDC 2063461: Experimental Crystal Structure Determination

description: Related Article: Anthony Choi, Ashraf El-Tunsi, Yuhang Wang, Anthony J. H. M. Meijer, Jia Li, Xiabing Li, Ilaria Proietti Silvestri, Iain Coldham|2021|Chem.-Eur.J.|27|11670|doi:10.1002/chem.202101248
DOI: 10.5517/ccdc.csd.cc278691
title: CCDC 2063462: Experimental Crystal Structure Determination

description: Related Article: Anthony Choi, Ashraf El-Tunsi, Yuhang Wang, Anthony J. H. M. Meijer, Jia Li, Xiabing Li, Ilaria Proietti Silvestri, Iain Coldham|2021|Chem.-Eur.J.|27|11670|doi:10.1002/chem.202101248
DOI: 10.5066/f7668b7v
title: Pacific Continental Shelf Environmental Assessment (PaCSEA) GIS Resource Database

description: The USGS Western Ecological Research Center conducted seabird and marine mammal surveys for the U.S. Bureau of Ocean Energy Management (BOEM) Pacific Outer Continental Shelf Region to inform future alternative energy planning, development, and management in the northern California Current System (CCS). \r\n\r\nNamed the Pacific Continental Shelf Environmental Assessment (PaCSEA), the primary survey area extends from Fort Bragg, California to Grays Harbor in Washington state. \r\n\r\nThis region supports abundant populations of seabirds and marine mammals, but comprehensive, multi-seasonal aerial surveys were conducted two decades ago. Marine spatial planning, including potential site selection for offshore energy development, requires the description and quantification of recent species-specific and community patterns in distribution. \r\n\r\nPaCSEA will provide this updated scientific data to federal resource managers. Aircraft surveys conduct seabird and mammal counts together with oceanographic remote sensing -- including aerial hyperspectral radiometry (ocean color) and pyrometry (sea surface temperature) -- to record the biodiversity and ocean habitat features throughout this important and ecologically productive region off the Pacific Northwest coast.
DOI: 10.5066/f76971n5
title: Fire Patterns in the Range of the Greater Sage-Grouse, 1984-2013-Implications for Conservation and Management

description: Fire ranks among the top three threats to the greater sage-grouse (Centrocercus urophasianus) throughout its range, and among the top two threats in the western part of its range. The national research strategy for this species and the recent U.S. Department of the Interior Secretarial Order 3336 call for science-based threats assessment of fire to inform conservation planning and fire management efforts. The cornerstone of such assessments is a clear understanding of where fires are occurring and what aspects of fire regimes may be shifting outside of their historical range of variation. Analyses are stratified by major vegetation types and the seven greater sage-grouse management zones, delineated regionally as four western and three eastern management zones. Soil temperature and moisture indicators of resilience to fire and resistance to cheatgrass invasion, and the potential for establishment of a grass/fire cycle, are used as unifying concepts in developing fire threat assessments for each analysis strata.
DOI: 10.5066/f76m35bc
title: Summary Statistics Data for Greater Sage-Grouse (Centrocercus urophasianus) Nesting and Brood-Rearing Microhabitat in Nevada and California-Spatial Variation in Selection and Survival Patterns, 2009-16

description: This dataset provides summary statistics of multiple sage-grouse microhabitat characteristics of the Great Basin. These data support the following publication: Coates, P.S., Brussee, B.E., Ricca, M.A., Dudko, J.E., Prochazka, B.G., Espinosa, S.P., Casazza, M.L., and Delehanty, D.J., 2017, Greater sage-grouse (Centrocercus urophasianus) nesting and brood-rearing microhabitat in Nevada and CaliforniaSpatial variation in selection and survival patterns: U.S. Geological Survey Open-File Report 2017-1087, 79 p., https://doi.org/10.3133/ofr20171087.
DOI: 10.6084/m9.figshare.15040659
title: Data from: Seed size-number trade-offs are absent in the introduced range for three congeneric plant invaders

description: Data on mean individual seed mass and seed number of <i>Rumex conglomeratus</i>, <i>Rumex crispus</i>, and <i>Rumex obtusifolius</i> from both the native (United Kingdom) and introduced (New Zealand) ranges. Data were collected from natural populations in both ranges and from a common garden experiment in the introduced range. Seed size from the common gardens was compared with maternal seed size from field surveys to assess heritability. <br><br>Data include the mean individual seed mass and total seed number for both field surveys (Survey Seed Data.csv) and common gardens (Common Garden Seed Data.csv). Field survey data also include precipitation and minimum temperatures for each population as well as plant height for each individual. Metadata, which describes the content of each column in the datasets, can be found in Rumex Seed Data Metadata.csv.<br>These data are associated with the following manuscript:<br>Bufford, JL & Hulme, PE. 2021. Seed size-number trade-offs are absent in the introduced range for three congeneric plant invaders. <i>Journal of Ecology</i>. DOI: 10.1111/1365-2745.13761
DOI: 10.5517/ccdc.csd.cc27s9v6
title: CCDC 2078948: Experimental Crystal Structure Determination

description: Related Article: Carlos L. Santana, Eric W. Reinheimer, Ryan H. Groeneman|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27sbft
title: CCDC 2078966: Experimental Crystal Structure Determination

description: Related Article: Raphael E. Wildermuth, Christian Steinborn, David M. Barber, Kim S. Mühlfenzl, Mario Kendlbacher, Peter Mayer, Klaus Wurst, Thomas Magauer|2021|Chem.-Eur.J.|27|12181|doi:10.1002/chem.202101849
DOI: 10.5517/ccdc.csd.cc27sbgv
title: CCDC 2078967: Experimental Crystal Structure Determination

description: Related Article: Raphael E. Wildermuth, Christian Steinborn, David M. Barber, Kim S. Mühlfenzl, Mario Kendlbacher, Peter Mayer, Klaus Wurst, Thomas Magauer|2021|Chem.-Eur.J.|27|12181|doi:10.1002/chem.202101849
DOI: 10.5517/ccdc.csd.cc27tnh7
title: CCDC 2080239: Experimental Crystal Structure Determination

description: Related Article: Katherine I. Burton, Iris Elser, Alexander E. Waked, Tobias Wagener, Ryan J. Andrews, Frank Glorius, Douglas W. Stephan|2021|Chem.-Eur.J.|27|11730|doi:10.1002/chem.202101534
DOI: 10.5517/ccdc.csd.cc27tnj8
title: CCDC 2080240: Experimental Crystal Structure Determination

description: Related Article: Katherine I. Burton, Iris Elser, Alexander E. Waked, Tobias Wagener, Ryan J. Andrews, Frank Glorius, Douglas W. Stephan|2021|Chem.-Eur.J.|27|11730|doi:10.1002/chem.202101534
DOI: 10.5517/ccdc.csd.cc27tnk9
title: CCDC 2080241: Experimental Crystal Structure Determination

description: Related Article: Katherine I. Burton, Iris Elser, Alexander E. Waked, Tobias Wagener, Ryan J. Andrews, Frank Glorius, Douglas W. Stephan|2021|Chem.-Eur.J.|27|11730|doi:10.1002/chem.202101534
DOI: 10.5517/ccdc.csd.cc27tnlb
title: CCDC 2080242: Experimental Crystal Structure Determination

description: Related Article: Katherine I. Burton, Iris Elser, Alexander E. Waked, Tobias Wagener, Ryan J. Andrews, Frank Glorius, Douglas W. Stephan|2021|Chem.-Eur.J.|27|11730|doi:10.1002/chem.202101534
DOI: 10.5517/ccdc.csd.cc27dknw
title: CCDC 2067658: Experimental Crystal Structure Determination

description: Related Article: Desmond T. Chisholm, Paul G. Hayes|2021|New J.Chem.|45|15043|doi:10.1039/D1NJ01064F
DOI: 10.5517/ccdc.csd.cc27d998
title: CCDC 2067399: Experimental Crystal Structure Determination

description: Related Article: Desmond T. Chisholm, Paul G. Hayes|2021|New J.Chem.|45|15043|doi:10.1039/D1NJ01064F
DOI: 10.5517/ccdc.csd.cc27d987
title: CCDC 2067398: Experimental Crystal Structure Determination

description: Related Article: Desmond T. Chisholm, Paul G. Hayes|2021|New J.Chem.|45|15043|doi:10.1039/D1NJ01064F
DOI: 10.5517/ccdc.csd.cc27jrzj
title: CCDC 2071698: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.5517/ccdc.csd.cc27jryh
title: CCDC 2071697: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.5281/zenodo.5237443
title: Proactive COVID-19 testing in a partially vaccinated population.

description: Complete simulation-generated datasets analyzed in McGee et al. (2021) Proactive COVID-19 testing in a partially vaccinated population. medRxiv 2021.08.15.21262095. Data is uploaded in comma-separated .csv files which have been compressed using gzip. Descriptions of data columns can be found in the column_descriptions.csv file.
DOI: 10.5281/zenodo.5237442
title: Proactive COVID-19 testing in a partially vaccinated population.

description: Complete simulation-generated datasets analyzed in McGee et al. (2021) Proactive COVID-19 testing in a partially vaccinated population. medRxiv 2021.08.15.21262095. Data is uploaded in comma-separated .csv files which have been compressed using gzip. Descriptions of data columns can be found in the column_descriptions.csv file.
DOI: 10.6084/m9.figshare.15161493
title: Supplementary Texts and Tables

description: Supplementary Texts and Tables for Chloroflexi manuscript.
DOI: 10.6084/m9.figshare.15161493.v1
title: Supplementary Texts and Tables

description: Supplementary Texts and Tables for Chloroflexi manuscript.
DOI: 10.6084/m9.figshare.15161502
title: Genomes, Proteins, and Annotations

description: Genome fasta files (.fna), protein fasta files (.faa) called with prodigal in single mode, counts of KOFAM annotations (genomes_df.tsv) with genome IDs, Pfamscan annotations, and usearch annotations based on Kegg, Uniref and Uniprot database searches.
DOI: 10.6084/m9.figshare.15161502.v1
title: Genomes, Proteins, and Annotations

description: Genome fasta files (.fna), protein fasta files (.faa) called with prodigal in single mode, counts of KOFAM annotations (genomes_df.tsv) with genome IDs, Pfamscan annotations, and usearch annotations based on Kegg, Uniref and Uniprot database searches.
DOI: 10.6084/m9.figshare.15161496.v1
title: Supplementary Data

description: Supplementary data for the associated manuscript (tables and figures stored separately)
DOI: 10.6084/m9.figshare.15161496
title: Supplementary Data

description: Supplementary data for the associated manuscript (tables and figures stored separately)
DOI: 10.6084/m9.figshare.16416822
title: combined_ukbbCOVID_meta.txt

description: A bivariate genomic scan using the GWAS of healthy aging and UKBB COVID-19 infection to identify the genetic variants that contribute to both aging and the risk of COVID-19, i.e., aging-related COVID-19 risk.<br>
DOI: 10.17632/4jxgrnjj72.1
title: Data for: Clonal bulblet regeneration and endophytic communities profiling of Lycoris sprengeri, an economically valuable bulbous plant of pharmaceutical and ornamental value

description: Summary of sequencing results for endophytic communities in seed explants of Lycoris sprengeri
DOI: 10.17632/3ctrysks4p.1
title: Data for: Clonal bulblet regeneration and endophytic communities profiling of Lycoris sprengeri, an economically valuable bulbous plant of pharmaceutical and ornamental value

description: Endophytic fungi endophytic conmmunities in seed explants of Lycoris sprengeri
DOI: 10.17632/9tg9dmsfhm.1
title: Synthetic biosensor accelerates evolution by rewiring carbon metabolism toward specific metabolite. Seok et al.

description: Proper carbon flux distribution between cell growth and production of a target compound is important for biochemical production because improper flux reallocation inhibits cell growth, thus adversely affecting production yield. Here, using a synthetic biosensor to couple production of a specific metabolite with cell growth, we spontaneously evolve cells under the selective condition toward the acquisition of genotypes that optimally reallocate cellular resources. Using 3-hydroxypropionic acid (3-HP) production from glycerol in Escherichia coli as a model system, we determine that mutations in the conserved regions of proteins involved in global transcriptional regulation alter the expression of several genes associated with central carbon metabolism. These changes rewire central carbon flux towards the 3-HP production pathway, increasing 3-HP yield and reducing acetate accumulation by alleviating overflow metabolism. Our study provides a new perspective on adaptive laboratory evolution (ALE) using synthetic biosensors, thereby supporting future efforts in metabolic pathway optimization. The original western blot image related to FigS3B demonstrates that CRP expression is reduced when its start codon is changed from ATG to TTG. The original western blot image related to FigS5A demonstrates that CRP mutation (T168P) changes the structure of CRP, causing difficulty of CRP detection by anti-CRP antibody. To solve this, synthetic 8-myc sequence is integrated downstream of the CRP and detected by anti-Myc antibody (the image related to FigS5D).
DOI: 10.17632/6bkjdg5g85.1
title: Zmat3 is a key splicing regulator in the p53 tumor suppression program

description: Although TP53 is the most commonly mutated gene in human cancers, the p53-dependent transcriptional programs mediating tumor suppression remain incompletely understood. Here, to uncover critical components downstream of p53 in tumor suppression, we perform unbiased RNAi and CRISPR/Cas9-based genetic screens in vivo. These screens converge upon the p53-inducible gene Zmat3, encoding an RNA-binding-protein, and we demonstrate that ZMAT3 is an important tumor suppressor downstream of p53 in mouse KrasG12D-driven lung and liver cancers and human carcinomas. Integrative analysis of the ZMAT3 RNA-binding landscape and transcriptomic profiling reveals that ZMAT3 directly modulates exon inclusion in transcripts encoding proteins of diverse functions, including the p53 inhibitors MDM4 and MDM2, splicing regulators, and components of varied cellular processes. Interestingly, these exons are enriched in NMD signals, and, accordingly, ZMAT3 broadly affects target transcript stability. Collectively, these studies reveal ZMAT3 as a novel RNA-splicing and homeostasis regulator and key component of p53-mediated tumor suppression.
DOI: 10.17632/cph5w6cgw7.1
title: Data for: Clonal bulblet regeneration and endophytic communities profiling of Lycoris sprengeri, an economically valuable bulbous plant of pharmaceutical and ornamental value

description: Endophytic mbacteria communities of seed explants of Lycoris sprengeri
DOI: 10.17632/st3ykx36kd.1
title: Individual data from in vivo experiments

description: Animal weights, lung infectious titers, lung viral RNA yields and plasmatic viral RNA yields.
DOI: 10.5281/zenodo.5044831
title: Physiotherapy rehabilitation in subjects diagnosed with Subacromial Impingement Syndrome does not normalize shoulder muscle onset time of activation

description: Descriptive data of onset time of activation: Subacromial Impingment Syndrome (SIS) rehabilitation programs targets better physical clinical outcomes and movement patterns, clinicians suggest that resolution of altered movement is related to normalizing neuromuscular patterns. Changes in onset time of activation patterns and changes in clinical outcomes could improve our understanding of suitable rehabilitation strategies. Prospective longitudinal study, we examined neuromuscular firing patterns and clinical features before and after a standardised physiotherapy program in subjects diagnosed with SIS. Electromyography (EMG) recordings of eleven shoulder muscles were taken at the initial and discharge consultation in 34 volunteers diagnosed with SIS. EMG recording was performed during flexion, scaption, and abduction at slow, medium, and fast speeds with a loaded (3kg) and unloaded arm, as well as rotational motion, rotational strength, pain, shoulder function. Resulted showed inconsistent differences of onset time of activation - mainly in some periscapular muscles in all movements. No differences were seen of the EMG recordings for rotator cuff muscles. Differences in all clinical features were shown. Despite changes in onset time of activation, the study has not been able to demonstrate consistent changes of onset time of activation of the periscapular and rotator cuff muscles. Although, completion of standardized shoulder physiotherapy program for SIS resulted in improvements in clinical outcomes.
DOI: 10.5281/zenodo.5044830
title: Physiotherapy rehabilitation in subjects diagnosed with Subacromial Impingement Syndrome does not normalize shoulder muscle onset time of activation

description: Descriptive data of onset time of activation: Subacromial Impingment Syndrome (SIS) rehabilitation programs targets better physical clinical outcomes and movement patterns, clinicians suggest that resolution of altered movement is related to normalizing neuromuscular patterns. Changes in onset time of activation patterns and changes in clinical outcomes could improve our understanding of suitable rehabilitation strategies. Prospective longitudinal study, we examined neuromuscular firing patterns and clinical features before and after a standardised physiotherapy program in subjects diagnosed with SIS. Electromyography (EMG) recordings of eleven shoulder muscles were taken at the initial and discharge consultation in 34 volunteers diagnosed with SIS. EMG recording was performed during flexion, scaption, and abduction at slow, medium, and fast speeds with a loaded (3kg) and unloaded arm, as well as rotational motion, rotational strength, pain, shoulder function. Resulted showed inconsistent differences of onset time of activation - mainly in some periscapular muscles in all movements. No differences were seen of the EMG recordings for rotator cuff muscles. Differences in all clinical features were shown. Despite changes in onset time of activation, the study has not been able to demonstrate consistent changes of onset time of activation of the periscapular and rotator cuff muscles. Although, completion of standardized shoulder physiotherapy program for SIS resulted in improvements in clinical outcomes.
DOI: 10.5517/ccdc.csd.cc27js1m
title: CCDC 2071700: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.5517/ccdc.csd.cc27js3p
title: CCDC 2071702: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.5517/ccdc.csd.cc27x4v5
title: CCDC 2082637: Experimental Crystal Structure Determination

description: Related Article: Ping Bao, Feiyan Yu, Fu-Sheng He, Zhimei Tang, Wei-Ping Deng, Jie Wu|2021|Org.Chem.Front.|8|4820|doi:10.1039/D1QO00732G
DOI: 10.5517/ccdc.csd.cc27js2n
title: CCDC 2071701: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.5517/ccdc.csd.cc27js5r
title: CCDC 2071704: Experimental Crystal Structure Determination

description: Related Article: Naser Rahimi, Davit Zargarian|2021|New J.Chem.|45|15063|doi:10.1039/D1NJ01355F
DOI: 10.6084/m9.figshare.14780115
title: CPT Project Model Outputs

description: These datasets provide outputs of ocean model simulations used to generate figures in the study "Climate Process Team: improvement of ocean component of NOAA Climate Forecast System relevant to Madden-Julian Oscillation simulations". The SLH vertical mixing parameterization scheme used in the study is also included.
DOI: 10.7925/drs1.duchas_5139289
title: Bread

description: Story collected by a student at Rahan (B.) school (Rahan, Co. Offaly) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher L. Ó Reannacháin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4462144
title: Saint David's Well

description: Story collected by Billy Day, a student at An Teampoll Geal, Ceapach Chuinn school (Whitechurch, Co. Waterford) from informant an unidentified informant.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Liam Ó Faoláin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.