cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20003778.v1
title: Additional file 10 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 10: Table S2. Compounds used in the substrate screening assay by oxygen consumption using a Clark-type electrode. All substrates were purchased from Sigma Aldrich (Belgium) except Transclovamide (Cayman Chemical, Netherlands). 20 mM stocks were freshly prepared in either methanol or DMSO prior to the assays.
DOI: 10.6084/m9.figshare.20003781
title: Additional file 11 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 11: Table S3. Number of DOG genes identified in tetranychoid species and the number of hosts these tetranychoid species have been reported on. Table S4. Orthologous tetranychoid DOG clusters containing T. urticae DOG genes. Table S5. log2CPM values of T. urticae DOG genes across different stages [13] and in T. urticae males or females [51]. Table S6. log2FC of T. urticae DOG genes in diapausing females, host plant adapted/acclimatized lines and in acaricide resistant strains.
DOI: 10.6084/m9.figshare.20003781.v1
title: Additional file 11 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 11: Table S3. Number of DOG genes identified in tetranychoid species and the number of hosts these tetranychoid species have been reported on. Table S4. Orthologous tetranychoid DOG clusters containing T. urticae DOG genes. Table S5. log2CPM values of T. urticae DOG genes across different stages [13] and in T. urticae males or females [51]. Table S6. log2FC of T. urticae DOG genes in diapausing females, host plant adapted/acclimatized lines and in acaricide resistant strains.
DOI: 10.6084/m9.figshare.20003784
title: Additional file 12 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 12: Table S7. Calibrated normalized relative quantity (CNRQ) data used to determine the relative expression of TuDOG1, TuDOG8 and TuDOG16 genes in spider mites strains interacting differently with the Jasmonic acid defense.
DOI: 10.6084/m9.figshare.20003784.v1
title: Additional file 12 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 12: Table S7. Calibrated normalized relative quantity (CNRQ) data used to determine the relative expression of TuDOG1, TuDOG8 and TuDOG16 genes in spider mites strains interacting differently with the Jasmonic acid defense.
DOI: 10.6084/m9.figshare.20003787
title: Additional file 13 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 13: Table S8. Calibrated normalized relative quantity (CNRQ) data used to determine the silencing efficiency of TuDOG11 and TuDOG16 genes following injection with dsRNA. (sheet 1). Fitness (Fecundity, mortality and survival) data collected from RNAi injections experiments (sheet 2).
DOI: 10.6084/m9.figshare.20003787.v1
title: Additional file 13 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 13: Table S8. Calibrated normalized relative quantity (CNRQ) data used to determine the silencing efficiency of TuDOG11 and TuDOG16 genes following injection with dsRNA. (sheet 1). Fitness (Fecundity, mortality and survival) data collected from RNAi injections experiments (sheet 2).
DOI: 10.6084/m9.figshare.20003790
title: Additional file 14 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 14: Table S9. Enzyme characteristics. Protein yields were estimated from protein concentrations determined using Bradford assay. Iron content was estimated using ferrozine assay with a self-developed Fe3+ standard curve. All purified DOG proteins had good enough yields, with the lowest yields in PcDOG5 and PcDOG6. All proteins were able to bind varying amounts of iron. The errors in iron content represent standard deviation of the mean (n=4).
DOI: 10.6084/m9.figshare.20003790.v1
title: Additional file 14 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 14: Table S9. Enzyme characteristics. Protein yields were estimated from protein concentrations determined using Bradford assay. Iron content was estimated using ferrozine assay with a self-developed Fe3+ standard curve. All purified DOG proteins had good enough yields, with the lowest yields in PcDOG5 and PcDOG6. All proteins were able to bind varying amounts of iron. The errors in iron content represent standard deviation of the mean (n=4).
DOI: 10.6084/m9.figshare.20003793.v1
title: Additional file 15 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 15: Table S10. UPLC-MS data generated for recombinant DOG enzymes. The retention time, mass to charge ratios (m/z) and peak areas of the substrates and reaction products formed after in vitro incubations with recombinant DOG enzymes are shown. The reactions were carried out in 5 replicates, with boiled enzyme controls indicated as C1-C5 and the active enzyme reactions indicated as T1-T5 alongside the tested substrate.
DOI: 10.6084/m9.figshare.20003793
title: Additional file 15 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 15: Table S10. UPLC-MS data generated for recombinant DOG enzymes. The retention time, mass to charge ratios (m/z) and peak areas of the substrates and reaction products formed after in vitro incubations with recombinant DOG enzymes are shown. The reactions were carried out in 5 replicates, with boiled enzyme controls indicated as C1-C5 and the active enzyme reactions indicated as T1-T5 alongside the tested substrate.
DOI: 10.6084/m9.figshare.20003808.v1
title: Additional file 1 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 1: File S1. DOG sequences used for phylogenetic analysis. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003808
title: Additional file 1 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 1: File S1. DOG sequences used for phylogenetic analysis. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003817
title: Additional file 2 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 2: File S2a. Alleles of TuDOG7, TuDOG15 as picked from London strain of T. urticae cDNA and those of PcDOG5 and PcDOG6 as picked from Lahijan strain of P. citri cDNA. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003817.v1
title: Additional file 2 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 2: File S2a. Alleles of TuDOG7, TuDOG15 as picked from London strain of T. urticae cDNA and those of PcDOG5 and PcDOG6 as picked from Lahijan strain of P. citri cDNA. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003820
title: Additional file 3 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 3: File S2b. Codon optimized sequences of TuDOG7, TuDOG15, PcDOG5 and PcDOG6 as ordered from Genscript (The Netherlands) without the signal peptide sequence. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003820.v1
title: Additional file 3 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 3: File S2b. Codon optimized sequences of TuDOG7, TuDOG15, PcDOG5 and PcDOG6 as ordered from Genscript (The Netherlands) without the signal peptide sequence. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003826
title: Additional file 5 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 5: File S4. DNA alignment of TuDOG7 with a neighboring eukaryotic gene (tetur07g05920) identified as guanylate kinase. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003826.v1
title: Additional file 5 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 5: File S4. DNA alignment of TuDOG7 with a neighboring eukaryotic gene (tetur07g05920) identified as guanylate kinase. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003829
title: Additional file 6 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 6: File S5. DNA alignment of TuDOG10 with a neighboring eukaryotic gene (tetur12g01070) identified as glutaminyl peptide cyclotransferase. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003829.v1
title: Additional file 6 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 6: File S5. DNA alignment of TuDOG10 with a neighboring eukaryotic gene (tetur12g01070) identified as glutaminyl peptide cyclotransferase. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003832
title: Additional file 7 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 7: File S6. DNA alignment of TuDOG11 with a neighboring eukaryotic gene (tetur13g03880) identified as SSUH2 homolog isoform X2. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003832.v1
title: Additional file 7 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 7: File S6. DNA alignment of TuDOG11 with a neighboring eukaryotic gene (tetur13g03880) identified as SSUH2 homolog isoform X2. Format: FASTA, examination of this file requires the Bioedit program available at http://www.mbio.ncsu.edu/BioEdit/bioedit.html .
DOI: 10.6084/m9.figshare.20003838
title: Additional file 9 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 9: Table S1. Primers. Primers used in qPCR to quantify the transcriptional response of DOGs to tomato defense (sheet1-host transfer primers), Primers used to synthesize in situ probes (sheet 2-in situ primers), primers used in RNAi for dsRNA synthesis and qPCR (sheet 3-RNAi primers), primers used to amplify TuDOG7, TuDOG15, pcDOG5 and pcDOG6 gene alleles from a cDNA pool (sheet 4-DOG allele selection primers) and primers used for HGT verification of TuDOG7, TuDOG10 and TuDOG11(sheet 5-DOG-HGT verification primers).
DOI: 10.6084/m9.figshare.20003838.v1
title: Additional file 9 of Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals

description: Additional file 9: Table S1. Primers. Primers used in qPCR to quantify the transcriptional response of DOGs to tomato defense (sheet1-host transfer primers), Primers used to synthesize in situ probes (sheet 2-in situ primers), primers used in RNAi for dsRNA synthesis and qPCR (sheet 3-RNAi primers), primers used to amplify TuDOG7, TuDOG15, pcDOG5 and pcDOG6 gene alleles from a cDNA pool (sheet 4-DOG allele selection primers) and primers used for HGT verification of TuDOG7, TuDOG10 and TuDOG11(sheet 5-DOG-HGT verification primers).
DOI: 10.6084/m9.figshare.20003804
title: Additional file 10 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 10: Table S10. All negatively correlated predicted gene targets associated to life stage specific Fasciola hepatica miRNAs.
DOI: 10.6084/m9.figshare.20003804.v1
title: Additional file 10 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 10: Table S10. All negatively correlated predicted gene targets associated to life stage specific Fasciola hepatica miRNAs.
DOI: 10.6084/m9.figshare.20003807
title: Additional file 11 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 11: Table S11. MicroRNAs associated with Fasciola hepatica metabolism
DOI: 10.6084/m9.figshare.20003807.v1
title: Additional file 11 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 11: Table S11. MicroRNAs associated with Fasciola hepatica metabolism
DOI: 10.6084/m9.figshare.20003810
title: Additional file 12 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 12: Table S12. miRNAs targeting genes within the aerobic metabolic pathways, graphically represented in Fig. 8.
DOI: 10.6084/m9.figshare.20003810.v1
title: Additional file 12 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 12: Table S12. miRNAs targeting genes within the aerobic metabolic pathways, graphically represented in Fig. 8.
DOI: 10.6084/m9.figshare.20003813
title: Additional file 13 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 13: Table S13. Negatively correlated predicted targets of abundant Fasciola hepatica miRNAs.
DOI: 10.6084/m9.figshare.20003816
title: Additional file 14 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 14: Table S14. Comparison of miRNAs and their predicted gene targets using miRanda and TargetScan.
DOI: 10.6084/m9.figshare.20003813.v1
title: Additional file 13 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 13: Table S13. Negatively correlated predicted targets of abundant Fasciola hepatica miRNAs.
DOI: 10.6084/m9.figshare.20003816.v1
title: Additional file 14 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 14: Table S14. Comparison of miRNAs and their predicted gene targets using miRanda and TargetScan.
DOI: 10.6084/m9.figshare.20003834
title: Additional file 1 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 1: Table S1. Sequences of Fasciola hepatica miRNAs and their genomic coordinates and features.
DOI: 10.6084/m9.figshare.20003834.v1
title: Additional file 1 of Stage-specific miRNAs regulate gene expression associated with growth, development and parasite-host interaction during the intra-mammalian migration of the zoonotic helminth parasite Fasciola hepatica

description: Additional file 1: Table S1. Sequences of Fasciola hepatica miRNAs and their genomic coordinates and features.
DOI: 10.7925/drs1.duchas_5180439
title: Local Lakes

description: Story collected by a student at Glenanore school (Glennanore, Co. Waterford) from informant John Lynch.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Séamus Ó Maoldhomhnaigh.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142473
title: Ballinahinch Fort

description: Story collected by a student at Killyon school (Killyon, Co. Offaly) from informant Sam Alexander.
description: Teacher name missing.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher #missing.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142474
title: Holy Wells of Eglish

description: Story collected by a student at Killyon school (Killyon, Co. Offaly) (no informant identified).
description: Teacher name missing.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher #missing.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5180545
title: Herbal Cures

description: Story collected by a student at Clochar na Toirbhirte, Cluain Meala school (Greenan, Co. Waterford) from informant Mrs Lombard.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher An tSr. Treasa le Muire.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142476
title: The place I am about to tell you is the Leap Castle five miles from Roscrea.

description: Story collected by a student at Killyon school (Killyon, Co. Offaly) from informant Mrs Corrigan.
description: Teacher name missing.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher #missing.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5180546
title: Care of the Feet

description: Story collected by a student at Clochar na Toirbhirte, Cluain Meala school (Greenan, Co. Waterford) from informant Mrs Brown.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher An tSr. Treasa le Muire.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5180547
title: Saint Brigid's Night

description: Story collected by a student at Clochar na Toirbhirte, Cluain Meala school (Greenan, Co. Waterford) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher An tSr. Treasa le Muire.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142477
title: Fairy Story

description: Story collected by a student at Killyon school (Killyon, Co. Offaly) from informant John Hynes.
description: Teacher name missing.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher #missing.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5180548
title: Strange Animals

description: Story collected by a student at Clochar na Toirbhirte, Cluain Meala school (Greenan, Co. Waterford) from informant Mr Treacy.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher An tSr. Treasa le Muire.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142478
title: My Townland

description: Story collected by Kathleen Shiels, a student at Lusmagh school (Gortarevan, Co. Offaly) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher T. Ó Floinn.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5142479
title: Hidden Treasure

description: Story collected by a student at Bracknagh (1) school (Bracknagh, Co. Offaly) from informant Charles Mc Kay.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Isabella Graham.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.