cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10492465
title: Supplementary Information: The SecM arrest peptide adopts a helical conformation and traps a pre-peptide bond formation state of the ribosome

description: The folder equil_simulations contains the data for the equilibrium simulations

The folder pulling_simulations contains the data for the pulling simulations

The folder data contains the raw data for Figures 6 and S11
DOI: 10.5281/zenodo.10492464
title: Supplementary Information: The SecM arrest peptide adopts a helical conformation and traps a pre-peptide bond formation state of the ribosome

description: The folder equil_simulations contains the data for the equilibrium simulations

The folder pulling_simulations contains the data for the pulling simulations

The folder data contains the raw data for Figures 6 and S11
DOI: 10.5281/zenodo.10456839
title: Macaque Stereotax
DOI: 10.5281/zenodo.10456840
title: Macaque Stereotax
DOI: 10.5281/zenodo.10492421
title: Key Short-Term Economic Indicators

description: The Key Economic Indicators (KEI) database contains monthly and quarterly statistics (and associated statistical methodological information) for all OECD member Countries and for a selection of non-member Countries on a wide variety of economic indicators, namely: quarterly national accounts, industrial production, composite leading indicators, business tendency and consumer opinion surveys, retail trade, consumer and producer prices, hourly earnings, employment/unemployment, interest rates, monetary aggregates, exchange rates, international trade and balance of payments.

It is based on data originally downloaded by the site https://stats.oecd.org/Index.aspx?DataSetCode=KEI.

Raw data from OECD, harmonization and homogenization of data from UNIPV - Laboratory of Geomatics
description: Data collected from OECD (Organization for Economic Cooperation and Development).The generated information from this database could be used for scientific publications and useful for the future Public Health Observatories.
DOI: 10.5281/zenodo.10492422
title: Key Short-Term Economic Indicators

description: The Key Economic Indicators (KEI) database contains monthly and quarterly statistics (and associated statistical methodological information) for all OECD member Countries and for a selection of non-member Countries on a wide variety of economic indicators, namely: quarterly national accounts, industrial production, composite leading indicators, business tendency and consumer opinion surveys, retail trade, consumer and producer prices, hourly earnings, employment/unemployment, interest rates, monetary aggregates, exchange rates, international trade and balance of payments.

It is based on data originally downloaded by the site https://stats.oecd.org/Index.aspx?DataSetCode=KEI.

Raw data from OECD, harmonization and homogenization of data from UNIPV - Laboratory of Geomatics
description: Data collected from OECD (Organization for Economic Cooperation and Development).The generated information from this database could be used for scientific publications and useful for the future Public Health Observatories.
DOI: 10.6084/m9.figshare.24982555
title: Supplementary Materials: Supplementary Tables from Uncovering the mosaic evolution of the carnivoran skeletal system

description: The diversity of vertebrate skeletons is often attributed to adaptations to distinct ecological factors such as diet, locomotion, and sensory environment. Although the adaptive evolution of skull, appendicular skeleton, and vertebral column is well studied in vertebrates, comprehensive investigations of all skeletal components simultaneously are rarely performed. Consequently, we know little of how modes of evolution differ among skeletal components. Here, we tested if ecological and phylogenetic effects led to distinct modes of evolution among the cranial, appendicular and vertebral regions in extant carnivoran skeletons. Using multivariate evolutionary models, we found mosaic evolution in which only the mandible, hindlimb and posterior (i.e. last thoracic and lumbar) vertebrae showed evidence of adaptation towards ecological regimes whereas the remaining skeletal components reflect clade-specific evolutionary shifts. We hypothesize that the decoupled evolution of individual skeletal components may have led to the origination of distinct adaptive zones and morphologies among extant carnivoran families that reflect phylogenetic hierarchies. Overall, our work highlights the importance of examining multiple skeletal components simultaneously in ecomorphological analyses. Ongoing work integrating the fossil and paleoenvironmental record will further clarify deep-time drivers that govern carnivoran diversity we see today and reveal the complexity of evolutionary processes in multicomponent systems.
DOI: 10.34740/kaggle/dsv/7384462
title: MoviesDatasets
DOI: 10.34740/kaggle/dsv/7384465
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.10492612
title: CuIn(Se,Te)2 absorbers with bandgaps < 1 eV for bottom cells in tandem applications

description: These files supply the data of the figures in the paper "CuIn(Se,Te)2 absorbers with bandgaps < 1 eV for bottom cells in tandem applications" by Thomas Paul Weiss, Mohit Sood, Aline Vanderhaegen, Susanne Siebentritt, currently under review at Physical Review Applied
DOI: 10.5281/zenodo.10492613
title: CuIn(Se,Te)2 absorbers with bandgaps < 1 eV for bottom cells in tandem applications

description: These files supply the data of the figures in the paper "CuIn(Se,Te)2 absorbers with bandgaps < 1 eV for bottom cells in tandem applications" by Thomas Paul Weiss, Mohit Sood, Aline Vanderhaegen, Susanne Siebentritt, currently under review at Physical Review Applied
DOI: 10.6084/m9.figshare.24982561.v1
title: File S1. Aligned 18S sequences used for the maximum-likelihood analysis, trimmed in MEGA7 to the shortest length among the sequences. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982561
title: File S1. Aligned 18S sequences used for the maximum-likelihood analysis, trimmed in MEGA7 to the shortest length among the sequences. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982564
title: File S3. Concatenated 18S+28S sequences used for the maximum-likelihood analysis, reduced to 2440 positions (1–1458 for 18S; 1459–2440 for 28S) by removing alignment-ambiguous sites with Gblocks under “relaxed” parameters. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982564.v1
title: File S3. Concatenated 18S+28S sequences used for the maximum-likelihood analysis, reduced to 2440 positions (1–1458 for 18S; 1459–2440 for 28S) by removing alignment-ambiguous sites with Gblocks under “relaxed” parameters. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982567.v1
title: File S2. Aligned 28S sequences used for the maximum-likelihood analysis, trimmed in MEGA7 to the shortest length among the sequences. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982567
title: File S2. Aligned 28S sequences used for the maximum-likelihood analysis, trimmed in MEGA7 to the shortest length among the sequences. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982570
title: Table S1. Information on the flatworms included in our phylogenetic analysis. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982570.v1
title: Table S1. Information on the flatworms included in our phylogenetic analysis. from Flatworm cocoons in the abyss: same plan under pressure

description: While knowledge of early ontogeny in abyssal animals is highly limited in general, it was completely lacking for abyssal, free-living platyhelminths. We discovered flatworm egg capsules (or ‘cocoons') on rocks collected at depths of 6176–6200 m on the abyssal slope of the Kuril-Kamchatka Trench, northwestern Pacific. The egg capsules were black and spherical, around 3 mm in diameter, and contained three to seven individuals (<i>n</i> = 4) at the same developmental stage, either the spherical (putative early embryo) or vermiform (putative late embryo) stages. A molecular phylogenetic analysis based on 18S and 28S rRNA sequences revealed that the flatworms belong in suborder Maricola in Tricladida and suggested that they may have colonized from shallow to deep waters. This study provides the deepest record for free-living flatworms and the first information on their early life stages in the abyssal zone, which were very similar to those in shallow-water forms. This similarity in development between the relatively benign shallow-water and the extreme abyssal environments suggests that triclads adapting to the latter faced primarily physiological and/or ecological adaptive challenges rather than developmental ones.
DOI: 10.6084/m9.figshare.24982554.v1
title: Supplementary Figure 7

description: C9orf72 ALS MN death in <i>generic</i> or <i>phMN</i><sup><em>ENRICHED</em></sup> cultures derived from the CS52 hiPSC line.
DOI: 10.6084/m9.figshare.24982554
title: Supplementary Figure 7

description: C9orf72 ALS MN death in <i>generic</i> or <i>phMN</i><sup><em>ENRICHED</em></sup> cultures derived from the CS52 hiPSC line.
DOI: 10.6084/m9.figshare.24356152
title: Experimental data of flow with a flexible plate.

description: Experimental results of the flow passing a single flexible plate.
DOI: 10.6084/m9.figshare.24356152.v3
title: Experimental data of flow with a flexible plate.

description: Experimental results of the flow passing a single flexible plate.
DOI: 10.5281/zenodo.4251938
title: Digital Map of World Countries

description: The dataset contains the borders of the world countries. It is encoded in the Esri™ shapefile format. It is based on data originally downloaded by the site <strong>https://gadm.org/download_country_v2.html. </strong> The Laboratory of Geomatics at the University of Pavia edited the original data by modifying some polygons and adding some fields in the associated table.
description: The file is coded in the Esri™ shapefile file format. This represents a de-facto standard format in the GIS sector. Delivered file can be viewed and edited with commercial programs such as Esri™ ArcGIS as well as open source programs like QGIS (www.qgis.org)
DOI: 10.17909/0gg0-4581
title: TESS Data Validation Files: Multi-Sector 1-69

description: All data validation files from Multi-Sector 1-69.
DOI: 10.6084/m9.figshare.24982600
title: STL File of The Stomach Geometry from <i>In</i> <i>silico</i> modelling of the effect of pyloric intervention procedures on gastric flow and emptying in a stomach with gastroparesis

description: Pyloric interventions are surgical procedures employed to increase the gastric emptying rate in gastroparesis patients. In this study, we use an <i>in silico</i> model to investigate the consequences of pyloric intervention on gastric flow and emptying for two phenotypes of gastroparesis: antral hypomotility and decreased gastric tone. The transpyloric pressure gradient predicted by the <i>in silico</i> model, based on viscous fluid flow equations, is compared against <i>in vivo</i> measurements. Both phenotypes exhibit a similar pre-procedural emptying rate reduction, but after pyloric surgery, antral hypomotility case with preserved gastric tone shows significant improvements in emptying rates, up to 131%, accompanied by bile reflux from the duodenum into the stomach. Conversely, severely reduced gastric tone cases exhibited a post-procedural reduction in the net emptying rate due to the relatively larger bile reflux. In cases with a combination of antral hypomotility and reduced gastric tone, post-procedural improvements were observed only when both conditions were mild. Our findings highlight the pivotal role of the relative increase in pyloric orifice diameter in determining post-operative emptying rates. The study suggests a possible explanation for the selective response of patients toward these procedures and underscores the potential of <i>in silico</i> modelling to generate valuable insights to inform gastric surgery.
DOI: 10.6084/m9.figshare.24982600.v1
title: STL File of The Stomach Geometry from <i>In</i> <i>silico</i> modelling of the effect of pyloric intervention procedures on gastric flow and emptying in a stomach with gastroparesis

description: Pyloric interventions are surgical procedures employed to increase the gastric emptying rate in gastroparesis patients. In this study, we use an <i>in silico</i> model to investigate the consequences of pyloric intervention on gastric flow and emptying for two phenotypes of gastroparesis: antral hypomotility and decreased gastric tone. The transpyloric pressure gradient predicted by the <i>in silico</i> model, based on viscous fluid flow equations, is compared against <i>in vivo</i> measurements. Both phenotypes exhibit a similar pre-procedural emptying rate reduction, but after pyloric surgery, antral hypomotility case with preserved gastric tone shows significant improvements in emptying rates, up to 131%, accompanied by bile reflux from the duodenum into the stomach. Conversely, severely reduced gastric tone cases exhibited a post-procedural reduction in the net emptying rate due to the relatively larger bile reflux. In cases with a combination of antral hypomotility and reduced gastric tone, post-procedural improvements were observed only when both conditions were mild. Our findings highlight the pivotal role of the relative increase in pyloric orifice diameter in determining post-operative emptying rates. The study suggests a possible explanation for the selective response of patients toward these procedures and underscores the potential of <i>in silico</i> modelling to generate valuable insights to inform gastric surgery.