cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1163032
title: Structural Basis Of Actin Monomer Re-Charging By Cyclase-Associated Protein

description: 1) table_of_simulations.pdf:  table of simulations

2) toppar_HIC.str: methylhistidine (HIC) topologies and parameters

     -prepared based on analogy

     -to be used with top_all36_prot.rtf and par_all36_prot.prm

3) simulation_archive.tar.gz

    The Contents:

1_ADP-Actin--CARP, 2_ADP-Actin--CAP1, 3_ATP-Actin--WH2, 4_ADP-Actin<br>
All systems presented in the paper; see table_of_simulations.pdf<br>
Each directory contains<br>
000README  gromacs_topologies  gromacs_tpr_files  index.ndx  processed_trajectories  prod.mdp  systems_at_t=0

*** The rosetta models for WH2 domain and the proline-rich loop that connects it to the CARP domain can be found in  2_ADP-Actin--CAP1/rosetta_models

<br>
_Topologies:<br>
    toppar_c36_jul16:<br>
        The charmm force field version used to generate topologies before conversion to gromacs; see 000README in the systems directory<br>
   <br>
    ***toppar_c36_jul16/toppar_HIC.str: The topology and parameters for methylated histidine used in the simulations.

    gromacs_topologies:<br>
    Contains all itp files (converted from  psf file using PyTopol's psf2top utility) and parameters.<br>
    Note that relevant files can also be found in directories corresponding to each system ( 1_ADP-Actin--CARP  2_ADP-Actin--CAP1  3_ATP-Actin--WH2  4_ADP-Actin)
description: {"references": ["Kotila, T., Kogan, K., Enkavi, G., Guo, S., Vattulainen, I., Goode, B. L., & Lappalainen, P. (2018). Structural basis of actin monomer re-charging by cyclase-associated protein. Nature Communications, 9, 1892. http://doi.org/10.1038/s41467-018-04231-7"]}
DOI: 10.5281/zenodo.1163382
title: Genome Assemblies For "Versatile Genome Assembly Evaluation With Quast-Lg"

description: <em>De novo</em> genome assemblies of


	Yeast_PB (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
	Yeast_NP (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)
	Worm_PB (<em>C. elegans</em>,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
	Fly_MP (<em>D. melanogaster</em>, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)
	Human_MP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)
	Human_NP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopores)


Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information and other human datasets assemblies please visit http://cab.spbu.ru/software/quast-lg/ or write to <em>quast.support@cab.spbu.ru.</em>
DOI: 10.6073/pasta/2f4dd2236545ea8e350a98e0f6523347
title: Sediment trap fecal pellets enumerations collected aboard CCE LTER process cruises in the California Current system, 2016 – present.
DOI: 10.6073/pasta/38f962ba993e2fe184d21e651a982ca5
title: Sediment trap Rhizaria flux from sediment trap samples collected aboard CCE LTER process cruises in the California Current system, 2011 - present.
DOI: 10.6073/pasta/e687ed8f2961f35180ada4656fd7fb6a
title: Fecal pellet flux summary from samples collected during CCE LTER process cruises in the California Current system, 2007 – present.
DOI: 10.15468/vanhto
title: A revision of the spider genus Raveniola (Araneae, Nemesiidae). I. Species from Western Asia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zonstein, Sergei, Kunt, Kadir B., Yağmur, Ersen A. (2018): A revision of the spider genus Raveniola (Araneae, Nemesiidae). I. Species from Western Asia. European Journal of Taxonomy 399: 1-93, DOI: https://doi.org/10.5852/ejt.2018.399
DOI: 10.17632/cvc5f4k3gs.1
title: Prevalence and Risk Factors of Addiction within Aged Rural People in Fars Province, Iran

description: Substance misuse is one of the health issues and problems of elderly people at the later life which has not been considered competently in aging science as well. There is low knowledge and insufficiency investigative data within physicians and psychotherapists who work in elderly community regarding this phenomenon. Having knowledge and instrument on measurement of Addiction in Aging is vital. Rural areas are a pristine and intact context where gerontologists could be trained to investigate issues and older adults' problems. The study was aimed to investigate addiction in the later life in rural community. In a cross sectional study, about 326 middle older adults (Male 150 & Female 176) who aged 60 years ole and above were chosen via snowball sampling technique. Bootstrap simulation technique boosted the sample size to a thousand older adults. They are covered by rural health administrations in Fath-Abad rural communities of Tadevan area in southern Iran, 2017. Using ANOVA, independent t test, and x^2, data was analyzed by IBM-SPSS version 23. The instrument was of questionnaire consumption alcohol, cigarette and other substance organization world health (ASSIST-WHO, V. 3.0, 20017).
DOI: 10.17632/rh29zp9zmj.1
title: FTLE and trajectories of 2D integrable ABC flow

description: Time series is generated using Runge-Kutta fourth order integration of 2D integrable ABC flow with A = B = 1.2 and C = 0. This time series serves as input for calculations of finite-time Lyapunov exponent (FTLE) and flow trajectories . The purpose is the identification of trajectories passing shear and strain barriers captured using FTLE.
DOI: 10.17632/d6dhc9mfxb.1
title: Fagerstrom Test for Nicotine Dependence within Older Adults in Jahrom city, Iran

description: This data-set is compiled over the years 2017. The statistical population is older adults who aged 60 years old & over in Jahrom city , south of Iran. About 60 elderly addicts were interviewed.
DOI: 10.17632/4ck6sf77z5.5
title: Detection of Salivary Protein Biomarkers in a Primary Sjögren Syndrome Murine Model

description: Salivary biomarkers related to saliva secretion disorder were identified in a primary Sjögren syndrome (pSS)pSS murine model, NOD/ShiLtJ mouse, using differential proteomic analysis. We used 14-week-old female NOD/ShiLtJ mice and age- and sex-matched BALB/c mice as controls. 30 stimulated saliva samples and mixed them into six protein pools (three pSS pools and three control pools) for differential proteomic analysis.After Nano-high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) separation, 98.14% (69,276/69,276) spectra were used for protein identification. We identified 1,101 proteins from saliva; 68.12% (750/1,101) were detected both in NOD/ShiLtJ and BALB/c mice .Two mice strains showed a similar salivary protein spectrum. Differentially expressed proteins were determined by applying Mann-Whitney test, corrected by Benjamini-Hochberg method at a significance level of p&lt;0.03173 and fold change of &gt;1.5.
DOI: 10.17632/6s9yzm7hr7.1
title: Hepatitis B, C Signs and HIV-Aids among Middle-Aged and Older IDUs in the Southwest Iran

description: Injected addiction is a main factor in Hepatitis infection type B, C, and HIV-Aids. The study aimed to measure seroprevalence of hepatitis virus type C, B, and HIV-Aids within injected drug abusers and its factors. Data set include ROC curves and it's result & tables.
DOI: 10.17632/d6ybzktf9v.1
title: When the context matters: Identity, secession and the spatial dimension in Catalonia (replication dataset)

description: Replication materials (dataset and code) for the article: Rodon, Toni; Guinjoan, Marc (2018) "When the context matters: Identity, secession and the spatial dimension in Catalonia". Political Geography. If you have questions, please contact the authors: www.tonirodon.cat www.marcguinjoan.cat
DOI: 10.6073/pasta/8753a2030c3940cc9ee525528bcacec4
title: Sapling Census:FAB 1: Forests and Biodiversity Experiment - High density diversity experiment
DOI: 10.17632/fbd9pd6hnx.6
title: DEMs optimization (with 4 DEMs)

description: ALOS, SRTM, ASTER and NED DEMS at 1 arc sec resolution for Death Valley California-Nevada Data files are in data2.zip while Run outputs in _rundata2.zip. Used only for 4-d testing of the SVR.DEM (GitHub) software since a) ALOS, SRTM
DOI: 10.17632/md54p6gns3.1
title: Fracture toughness of synthesized high-performance epoxies subject to accelerated water aging

description: Video reproducing the internal stresses induced by swelling during the Hydrothermal Aging of a DGEBA+DDS and a DGEBF+DDS epoxy systems. The video shows photoelastic isochromatic fringes acquired in red light from a circular dark field polariscope. Samples shown are bulk beams and Single Edge Notched Bending beams (compliant with ASTM D 5045). The video is linked in the paper Journal "Fracture toughness of synthesised high-performance epoxies subject to accelerated water aging" by Giuseppe Pitarresi, Sabina Alessi and Andrea Toscano.
DOI: 10.17632/zx6jwryhs3.1
title: Experimental data for test the WPS tier and quality report: results of the quality control service

description: This dataset contains the results of the WPS tier and quality report presented in the thesis "Automatic evaluation of geospatial data quality using web services". The thesis' main goal was to develop a web service able to evaluate the quality of geospatial datasets using the standardized interface of Web Processing Service (WPS) in a fully automatic way. WPS is an open specification from the Open Geospatial Consortium (OGC) that defines an interface aiming to publish, use, discovery and binding geospatial processes. In the proposed architecture of the quality control service, the WPS tier plays the role of interface between clients and the evaluation procedures. This dataset contains the files used in the experiment to test the implementation of the WPS tier, which includes the quality reports. In order to test the WPS tier, we ran three essays, one for each service developed: (w1) topological consistency service, (w2) completeness service, and (w3) positional accuracy (planimetry) service. These services implement quality evaluation procedures described in the Brazilian standard of geospatial data quality, named CQDG (http://www.geoportal.eb.mil.br/). We tested these services using data from the matching testbed (https://www.nature.com/articles/sdata2017180). These essays are summarized in Fig_Overview_of_requests.png. The first essay, named W1, checked the topological consistency service. There are four requests: w1-01 to w1-04, with their correspondent responses. The W2 essay evaluated the implementation of the completeness service. This essay has four data inputs: (1) Test: the test dataset (matching testbed S7P); (2) Reference: the reference dataset (matching testbed B7P); (3) ScaleDenominator: the scale of test dataset, used in sampling (1:25,000); and (4) SamplingStrategy: the sampling strategy to be adopted when calculating the commission and omission rates. There are six requests: w2-01 to w2-06, with their correspondent responses. The last essay for the WPS tier, named W3, evaluated the implementation of the positional accuracy (planimetry) service, which accomplishes the automatic quality procedures for positional accuracy of planimetry in the Brazilian standard. The output values are: (1) CQDG:301: the value of quality category; (2) ER90: 90% percentile of planimetric errors; and (3) RMS: root mean square (RMS) of planimetric errors. They can be combined into a quality report in ISO 19157-2 XML format. There are 33 requests: w3-01 to w3-03, w3-040 to w3-049, w3-140 to w3-149, w3-240 to w3-249, with their correspondent responses. The first three requests used the dataset S1A (see matching testbed), and the last 30 requests used 10 datasets with random disturbance with a standard displacement of 5 m (see matching testbed).
DOI: 10.5281/zenodo.1162952
title: Data Sets For Fastread

description: Three datasets created with information in existing systematic literature review publications.

Hall.csv is created according to Hall, et al., "A systematic literature review on fault prediction performance in software engineering", 2012.

Wahono.csv is created according to Wahono, et al., "A systematic literature review of software defect prediction: research trends, datasets, methods and frameworks", 2015.

Radjenovic.csv is created according to Radjenovic, et al., "Software fault prediction metrics: A systematic literature review", 2013.

One dataset (Kitchenham.zip) provided by Barbara Kitchenham (cleaned and summarized by Zhe Yu) from Kitchenhm et al. "Systematic literature reviews in software engineering- A tertiary study", 2010.

These datasets are used in our submission to Empirical Software Engineering: "How to Read Less: On the Benefit of Active Learning for Primary Study Selection in Systematic Literature Reviews".
description: Thank Chandramouli Shama Sastry for finding the incorrect entries in the datasets
DOI: 10.3886/e101372v1
title: Temperament Traits, Covert Attention in the Lab, and Overt Attention in the Real World

description: Dataset used in aforementioned research report. Excel file contains one worksheet with data and one worksheet with variable names and descriptions.<br>
description: Presence of Common Scales: Adult Temperament Scale (Effort Control & Orienting Sensitivity; Evans, & Rothbart, 2007); Current Symptom Scale (Barkley & Murphy, 1998); Attention Network Task (Fan, McCandliss, Sommer, Raz, & Posner, 2002); coded POV video recordings developed by authors.
description: coded video observation~~cognitive assessment test~~on-site questionnaire~~other~~
description: Normative sample of undergraduate participants
description: Convenience sample of undergraduates recruited from psychology classes. Offered extra credit in course in exchange for participation. Individuals who indicated prior diagnoses of ADHD or LD not included in this sample.
DOI: 10.17632/9h4ckzpmjv.1
title: Data for the ''Ontogeny of tool making in children: the role of perceptual-action and representational factors'' study

description: This data is collected in 2015 and 2016. Deatils of the coding, data anaysis and data reduction will appear in a paper submitted to a journal.
DOI: 10.17632/bd2cdf833m.2
title: DEMs optimization

description: The ALOS, SRTM and ASTER GDEM representation of the study area. The study area is bounded by latitude and longitude in the range 27.1107° to 27.5555° and 54.2362° to 54.6810° respectively corresponding to the central portion of Zagros Ranges in Iran where collision of the Arabian shield with he Eurasian Plate has shortened and thickened the crust to produce a spectacular mountainous physiography. The data are posted on a 1 arc-second grid and horizontally referenced to the 1984 World Geodetic System (WGS84) while the 1996 Earth Gravitational Model (EGM96) geoid is the vertical datum
DOI: 10.17632/ccbtwnwbgw.1
title: Illinois SEI Data

description: Data were obtained from two public dataset summary reports made in 2012. The State Central Register (SCR) database archives all cases reported to DCFS and documents all reports as indicated or unfounded, based on the subsequent investigation of evidence related to maltreatment reports of a controlled substance in a newborn. The Adverse Pregnancy Outcomes Reporting System (APORS) database is maintained by IDPH to track trends in birth outcomes across Illinois.
DOI: 10.17632/w64gcxkxtt.1
title: Marketing Audit Model Oriented to the Traceability of the Objectives and Strategies.

description: Summary of the quantitative answers about the conceptions, needs and requirements to make an Marketing Audit. This answers allowed the creation of a new model of Marketing Audit.
DOI: 10.17632/w64gcxkxtt.2
title: Marketing Audit Model Oriented to the Traceability of the Objectives and Strategies.

description: Summary of the quantitative answers about the conceptions, needs and requirements to make an Marketing Audit. This answers allowed the creation of a new model of Marketing Audit. This information is exposed in the original language (Spanish)
DOI: 10.17632/w64gcxkxtt.3
title: Marketing Audit Model Oriented to the Traceability of the Objectives and Strategies.

description: Summary of the quantitative answers about the conceptions, needs and requirements to make a Marketing Audit. This answers allowed the creation of a new model of Marketing Audit. This information is exposed in the original language (Spanish)
DOI: 10.17632/c9ft284t23.1
title: Data For: Dry-Wet Cycles of Kettle Hole Sediments Leave a Microbial and Biogeochemical Legacy

description: Original Research Data: Sediment biogeochemistry (Physicochemical parameters, OM quantity and quality) Gas measurements (net CO2 and CH4 production) Functional gene abundancy and diversity
DOI: 10.17632/4d4wx3j998.1
title: Picture Overviews - Skingraft on base of hAM

description: Allogenic graft material and tissue engineering have recently shown promising results for the improvement of both aesthetic and functional outcomes in the treatment of large skin defects. We chose human amniotic membranes (hAM) as a cellular scaffold in order to develop a skin substitute for later in-vivo uses. Various methods of de-epithelialization of the hAM were evaluated by histological analysis including hematoxylin-eosin and laminin staining, optic coherence tomography (OCT), and scanning electron microscopy with 0.25/0.02% trypsin/EDTA treatment and mechanical cell removal showing a complete loss of the epithelium and a mainly intact basement membrane. Novel examination of hAM by OCT was feasible, but difficulties were experienced in handling and interpretation of the tissue as no comparable data exist. Subsequently, we developed an air-liquid-interface cell culture to cultivate keratinocytes and fibroblasts on the de-epithelialized hAM. When comparing various air-liquid cell-culture media and resulting cell viability, we found that a mainly keratinocyte-based medium containing a low amount of serum provided good keratinocyte and fibroblast viability. We achieved a mostly keratinized surface on the epidermal side with a confluent fibroblast network on the chorion side.
DOI: 10.17632/kx832htkkv.1
title: Data for: On the performance of interatomic potential models of iron: comparison of the phase diagrams
DOI: 10.17632/tzdff9jvrj.2
title: Effect of Mass Transport on the Electrochemical Oxidation of Alcohols over Electrodeposited film and Carbon- Supported Pt electrodes

description: Result figures and data files
DOI: 10.17632/vzn5jdgn4t.2
title: Indonesian Lapor! Application Dataset

description: Dataset Pengaduan Masyarakat pada situs Lapor! diunduh dari data.go.id
DOI: 10.17632/2ypv6744p6.1
title: MARATHON database
DOI: 10.5517/ccdc.csd.cc1q8cmz
title: CCDC 1586971: Experimental Crystal Structure Determination

description: Related Article: Carlos Rojas-Dotti, Nicolás Moliner, Ricardo González, José Martínez-Lillo|2018|Polyhedron|144|82|doi:10.1016/j.poly.2018.01.009
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q8cn0
title: CCDC 1586972: Experimental Crystal Structure Determination

description: Related Article: Carlos Rojas-Dotti, Nicolás Moliner, Ricardo González, José Martínez-Lillo|2018|Polyhedron|144|82|doi:10.1016/j.poly.2018.01.009
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/c5pdcsx6hk.1
title: Green and simple: An experimental test of alternative Formats for environmental product information

description: Data from experiment testing: - Mean ranking of selected products in a shopping list completion task in relation to environmental, nutrition and effectiveness attributes. - Effects of specific versus standardised information about environmental/nutrition/effectiveness attributes - Effects of positive versus negatively framed attributes - Effects of completing the task with and without a time limit - Interactions between the time limit and information format or frame - Participant ability to select products matching directives on the shopping list under these different conditions.
DOI: 10.17632/g7chkjrp8f.1
title: The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins

description: Uploaded data includes curated and raw data linked to the following article: Peachey, LE., et al. 2017. The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins. Int. J. Para. In press. (link to article will be updated when article is online). Please see this article for the research hypothesis, study design and analyses/interpretation of findings The uploaded data here includes: 1) Trimmed and and joined (paired end) MiSEQ sequence fast files for sequence reads from each animal sample 2) QIIME output OTU table with OTU read numbers for each sample 3) Metadata V6 CSV file for biostatistical analyses. i.e. linking sample i.d. numbers in the QIIME OTU output table to animal groups according to infection status and time-points
DOI: 10.17632/hn7w6ghv9x.1
title: A hybrid data mining heuristic to solve the point-feature cartographic label placement problem - files

description: Instances, complete numerical results and complemmentary experiments for the manuscript 'A hybrid data mining heuristic to solve the point-feature cartographic label placement problem'.
DOI: 10.17632/md54p6gns3.2
title: Fracture toughness of synthesized high-performance epoxies subject to accelerated water aging

description: Video reproducing the internal stresses induced by swelling during the Hydrothermal Aging of a DGEBA+DDS and a DGEBF+DDS epoxy systems. The video shows photoelastic isochromatic fringes acquired in red light from a circular dark field polariscope. Samples shown are bulk beams and Single Edge Notched Bending beams (compliant with ASTM D 5045). The video is linked in the paper Journal "Fracture toughness of synthesised high-performance epoxies subject to accelerated water aging" by Giuseppe Pitarresi, Sabina Alessi and Andrea Toscano.
DOI: 10.17632/7x7cvgxbck.2
title: Thermal activation of persulphate for orange G degradation

description: The data consist of a spread sheet of which the first six sheets are UV absorption values showing the effect of temperature at an oxidant dose of 10 mM and 1 mM, inorganic salt, scavenger and quenching method on orange G degradation arising from the thermal activation of persulphate oxidant. The last two sheets are the total carbon measurement of the degraded orange G, humic acid, salicylic acid and caffeine solutions. The zip folder is a collection of raw chromatograms of degraded orange G solutions.