cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5n8df8jvk4.1
title: Comparative immune profiling of acute respiratory distress syndrome patients with or without SARS-CoV2 infection. Roussel et al

description: Acute respiratory distress syndrome (ARDS) is the main complication of COVID-19, requiring admission to Intensive Care Unit (ICU). Despite extensive immune profiling of COVID-19 patients, to what extent COVID-19-associated ARDS specifically differs from other causes of ARDS remains unknown. To address this crucial question, we build 3 cohorts of patients categorize in COVID-19negARDSpos, COVID-19posARDSpos, and COVID-19posARDSneg, and compare their immune landscape analyze by high-dimensional mass cytometry on peripheral blood follow by machine-learning based analysis. A cell signature associating S100A9/calprotectin-producing CD169pos monocytes, plasmablasts, and Th1 cells is found in COVID-19posARDSpos, unlike COVID-19negARDSpos patients. Moreover, this signature is essentially share with COVID-19posARDSneg patients, suggesting that severe COVID-19 patients, whatever they experience or not ARDS, display similar immune profiles. We also show an increase in CD14posHLA-DRlow and CD14lowCD16pos monocytes correlate to the occurrence of adverse events during ICU stay. Our study demonstrates that COVID-19-associated ARDS display a specific immune profile, and might benefit from personalize therapy in addition to standard ARDS management. Analyses were performed on a cohort 1 of 63 cryopreserved PBMC samples isolated from 42 patients included in ICU (n = 36) or infectious standard ward (n = 6). All patients but one were classified as severe at admission, requiring oxygen at a flow rate higher than 2 liters/min. ARDS was defined in accordance with international guidelines.34 Patients were classified in 3 groups: COVID-19negARDSpos (n = 12, ARDS stages: 1 mild, 4 moderate, 7 severe), COVID-19posARDSpos (n = 13, ARDS stages: 8 moderate, 5 severe), and COVID-19posARDSneg (n = 17, including 11 from ICU and 6 from infectious standard ward). In the COVID-19posARDSneg, no statistical differences were noticed for immune cell abundance or phenotype between ICU and standard ward patients. Within the COVID-19negARDSpos group, ARDS etiologies were bacterial pneumonia (n = 9), anti-synthetase syndrome (n = 1), and unknown (n = 2). For 21 patients, a second blood sample obtained on day 7 after enrollment was studied (n = 7 for COVID-19negARDSpos, n = 8 for COVID-19posARDSpos, and n = 6 for COVID-19posARDSneg). Additionally, a validation cohort (cohort 2) was set up with 16 patients with demographic data detailed in Table S1 and Table S2. Patients were classified in 3 groups: COVID-19negARDSpos (n = 6), COVID-19posARDSpos (n = 5), and COVID-19posARDSneg (n = 3); additionally, COVID-19negARDSneg (n = 2) samples were included. None of our patients received corticosteroids at the time of the study nor immune-modulators. The presence of SARS-CoV-2 in respiratory specimens (nasal and pharyngeal swabs or sputum) was detected by real-time reverse transcription polymerase chain reaction (RT-PCR) methods.
DOI: 10.7299/x7tt4r86
title: Arctos Publication Record: Bla
DOI: 10.17632/z6twpstz4r.1
title: Blue Rim escarpment geochemical data

description: Bulk geochemical of paleosols and sediments, and carbon isotope data of fossils from Blue Rim escarpment. Collected June and September 2019, and housed at the University of Michigan's Earth Systems Science Laboratory (supervised by Dr. Nathan Sheldon).
DOI: 10.6084/m9.figshare.14477748
title: Typhimurium_phylogeny_figure_4A

description: figure 4A phylogeny Typhimurium
DOI: 10.6084/m9.figshare.14477748.v1
title: Typhimurium_phylogeny_figure_4A

description: figure 4A phylogeny Typhimurium
DOI: 10.7299/x7q240j5
title: Arctos Publication Record: Bidlack and Cook 2002
DOI: 10.7299/x7k937tf
title: Arctos Publication Record: Conroy et al. 2001
DOI: 10.7284/135681
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR39A using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135688
title: Multiplexed data collected during research cruise AR39A using a WHOI dsLog gyro instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135683
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR39A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135673
title: Fluorometer data collected during research cruise AR39A using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135678
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR39A using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135682
title: Gravimeter data collected during research cruise AR39A using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135684
title: Meteorological Station data collected during research cruise AR39A using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135685
title: Meteorological Station data collected during research cruise AR39A using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135687
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise AR39A using a General Oceanics 8050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135677
title: Radiometer data collected during research cruise AR39A using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135679
title: Radiometer data collected during research cruise AR39A using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135676
title: Singlebeam Echosounder data collected during research cruise AR39A using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135675
title: Speedlog data collected during research cruise AR39A using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135672
title: Splitbeam Echosounder data collected during research cruise AR39A using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135680
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR39A using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135686
title: Water Temperature data collected during research cruise AR39A using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135674
title: TSG (Thermosalinograph) data collected during research cruise AR39A using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134905
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1921 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134906
title: Singlebeam Echosounder data collected during research cruise SP1921 using a Knudsen 320B/R instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134925
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1923 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134742
title: Multibeam Echosounder data collected during research cruise SR1917 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140035
title: Expendable Probe data collected during research cruise SR2001 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140048
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2001 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140029
title: INS (Inertial Navigation System) data collected during research cruise SR2001 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140031
title: INS (Inertial Navigation System) data collected during research cruise SR2001 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140032
title: INS (Inertial Navigation System) data collected during research cruise SR2001 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140033
title: Meteorological Station data collected during research cruise SR2001 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140058
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR2002 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140055
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2002 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140070
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2002 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140059
title: INS (Inertial Navigation System) data collected during research cruise SR2002 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140068
title: INS (Inertial Navigation System) data collected during research cruise SR2002 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140069
title: INS (Inertial Navigation System) data collected during research cruise SR2002 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140066
title: Magnetometer data collected during research cruise SR2002 using a Marine Magnetics SeaSPY instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140056
title: Multibeam Echosounder data collected during research cruise SR2002 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140057
title: Multibeam Echosounder data collected during research cruise SR2002 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140052
title: Singlebeam Echosounder data collected during research cruise SR2002 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140079
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR2003 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140074
title: Expendable Probe data collected during research cruise SR2003 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140076
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2003 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140091
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2003 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140080
title: INS (Inertial Navigation System) data collected during research cruise SR2003 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140088
title: INS (Inertial Navigation System) data collected during research cruise SR2003 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140089
title: INS (Inertial Navigation System) data collected during research cruise SR2003 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140090
title: INS (Inertial Navigation System) data collected during research cruise SR2003 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140072
title: Meteorological Station data collected during research cruise SR2003 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140077
title: Multibeam Echosounder data collected during research cruise SR2003 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140078
title: Multibeam Echosounder data collected during research cruise SR2003 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140100
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR2004 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140097
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2004 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140112
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2004 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140101
title: INS (Inertial Navigation System) data collected during research cruise SR2004 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140109
title: INS (Inertial Navigation System) data collected during research cruise SR2004 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140110
title: INS (Inertial Navigation System) data collected during research cruise SR2004 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140111
title: INS (Inertial Navigation System) data collected during research cruise SR2004 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140093
title: Meteorological Station data collected during research cruise SR2004 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140098
title: Multibeam Echosounder data collected during research cruise SR2004 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140099
title: Multibeam Echosounder data collected during research cruise SR2004 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140095
title: Singlebeam Echosounder data collected during research cruise SR2004 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140121
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR2005 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140116
title: Expendable Probe data collected during research cruise SR2005 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140118
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2005 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140134
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2005 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140122
title: INS (Inertial Navigation System) data collected during research cruise SR2005 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140131
title: INS (Inertial Navigation System) data collected during research cruise SR2005 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140133
title: INS (Inertial Navigation System) data collected during research cruise SR2005 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140114
title: Meteorological Station data collected during research cruise SR2005 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140119
title: Multibeam Echosounder data collected during research cruise SR2005 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140120
title: Multibeam Echosounder data collected during research cruise SR2005 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140115
title: Singlebeam Echosounder data collected during research cruise SR2005 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140187
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR2008 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140182
title: Expendable Probe data collected during research cruise SR2008 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140184
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2008 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140199
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR2008 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140188
title: INS (Inertial Navigation System) data collected during research cruise SR2008 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140196
title: INS (Inertial Navigation System) data collected during research cruise SR2008 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140197
title: INS (Inertial Navigation System) data collected during research cruise SR2008 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140198
title: INS (Inertial Navigation System) data collected during research cruise SR2008 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140179
title: Meteorological Station data collected during research cruise SR2008 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition