cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4285238
title: References Database from Behavioural change models for infectious disease transmission: a systematic review (2010–2015)

description: We review behavioural change models (BCM) for infectious disease transmission in humans. Following the Cochrane collaboration guidelines and the PRISMA statement, our systematic search and selection yielded 178 papers covering the period 2010–2015. We observe an increasing trend in published BCMs, frequently coupled to (re)emergence events, and propose a categorization by distinguishing how information translates into preventive actions. Behaviour is usually captured by introducing information as a dynamic parameter (76/178) or by introducing an economic objective function, either with (26/178) or without (37/178) imitation. Approaches using information thresholds (29/178) and exogenous behaviour formation (16/178) are also popular. We further classify according to disease, prevention measure, transmission model (with 81/178 population, 6/178 metapopulation and 91/178 individual-level models) and the way prevention impacts transmission. We highlight the minority (15%) of studies that use any real-life data for parametrization or validation and note that BCMs increasingly use social media data and generally incorporate multiple sources of information (16/178), multiple types of information (17/178) or both (9/178). We conclude that individual-level models are increasingly used and useful to model behaviour changes. Despite recent advancements, we remain concerned that most models are purely theoretical and lack representative data and a validation process.
DOI: 10.6084/m9.figshare.4285238.v1
title: References Database from Behavioural change models for infectious disease transmission: a systematic review (2010–2015)

description: We review behavioural change models (BCM) for infectious disease transmission in humans. Following the Cochrane collaboration guidelines and the PRISMA statement, our systematic search and selection yielded 178 papers covering the period 2010–2015. We observe an increasing trend in published BCMs, frequently coupled to (re)emergence events, and propose a categorization by distinguishing how information translates into preventive actions. Behaviour is usually captured by introducing information as a dynamic parameter (76/178) or by introducing an economic objective function, either with (26/178) or without (37/178) imitation. Approaches using information thresholds (29/178) and exogenous behaviour formation (16/178) are also popular. We further classify according to disease, prevention measure, transmission model (with 81/178 population, 6/178 metapopulation and 91/178 individual-level models) and the way prevention impacts transmission. We highlight the minority (15%) of studies that use any real-life data for parametrization or validation and note that BCMs increasingly use social media data and generally incorporate multiple sources of information (16/178), multiple types of information (17/178) or both (9/178). We conclude that individual-level models are increasingly used and useful to model behaviour changes. Despite recent advancements, we remain concerned that most models are purely theoretical and lack representative data and a validation process.
DOI: 10.6084/m9.figshare.4285202
title: Meisteretal

description: Latitudinal variation in immune response.
DOI: 10.6084/m9.figshare.4285169
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded datasets include the following: (1) The dataset used for the present manuscript as well as the R code (2) The maps related to the topographical and climatic variables (3) The maps related to Landsat variables (4) the shapefile containing all data points for each soil property.
DOI: 10.6084/m9.figshare.4285202.v1
title: Meisteretal

description: Latitudinal variation in immune response.
DOI: 10.6084/m9.figshare.4285202.v3
title: Meisteretal

description: Latitudinal variation in immune response.
DOI: 10.6084/m9.figshare.4285202.v2
title: Meisteretal

description: Latitudinal variation in immune response.
DOI: 10.6084/m9.figshare.4285169.v1
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded dataset contains: (1) dataset in text file format, in excel file format as well as the R code use to to train and test the model.<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.4285169.v2
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded dataset contains: (1) dataset in text file format, in excel file format as well as the R code use to to train and test the model.<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.4285169.v3
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded dataset contains: (1) dataset in text file format, in excel file format as well as the R code use to to train and test the model.<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.4285169.v4
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded dataset contains: (1) dataset in text file format, in excel file format as well as the R code use to to train and test the model.<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.4285169.v5
title: Soil properties mapping using high resolution remote sensing data in south-western Burkina Faso

description: Six soil properties- sand, silt, clay, cation exchange capacity, soil organic carbon, nitrogen- have been predicted using remote sensing data in the Dano Catchment (West Africa, Burkina Faso). The predictors topographical and sprectral (Landsat and RapidEye) data. These data are in support of the article entitled: "High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models". The uploaded dataset contains: (1) dataset in text file format, in excel file format as well as the R code use to to train and test the model, (2) Original Topographical and Landsat maps, (3) shapefile of the dataset (4) the output map<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.4285055
title: data_meisteretal.xls

description: Latitudinal variation in life history traits.
DOI: 10.6084/m9.figshare.4284770
title: Detecting Genome-wide Variants of Eurasian Facial Shape Differentiation: DNA based Face Prediction Tested in Forensic Scenario

description: It is a long standing question as to which genes define the characteristic facial features among different ethnic groups. In this study, we use Uyghurs, an ancient admixed population to query the genetic bases why Europeans and Han Chinese look different. Facial traits were analyzed based on high-dense 3D facial images; numerous biometric spaces were examined for divergent facial features between European and Han Chinese, ranging from inter-landmark distances to dense shape geometrics. Genome-wide association analyses were conducted on a discovery panel of Uyghurs. Six significant loci were identified four of which, rs1868752, rs118078182, rs60159418 at or near <i>UBASH3B</i>, <i>COL23A1</i>, <i>PCDH7 </i>and rs17868256 were replicated in independent cohorts of Uyghurs or Southern Han Chinese. A quantitative model was developed to predict 3D faces based on 277 top GWAS SNPs. In hypothetic forensic scenarios, this model was found to significantly enhance the verification rate in males, suggesting a practical potential of related research.
DOI: 10.6084/m9.figshare.4285055.v1
title: data_meisteretal.xls

description: Latitudinal variation in life history traits.
DOI: 10.6084/m9.figshare.4284770.v1
title: Detecting Genome-wide Variants of Eurasian Facial Shape Differentiation: DNA based Face Prediction Tested in Forensic Scenario

description: It is a long standing question as to which genes define the characteristic facial features among different ethnic groups. In this study, we use Uyghurs, an ancient admixed population to query the genetic bases why Europeans and Han Chinese look different. Facial traits were analyzed based on high-dense 3D facial images; numerous biometric spaces were examined for divergent facial features between European and Han Chinese, ranging from inter-landmark distances to dense shape geometrics. Genome-wide association analyses were conducted on a discovery panel of Uyghurs. Six significant loci were identified four of which, rs1868752, rs118078182, rs60159418 at or near <i>UBASH3B</i>, <i>COL23A1</i>, <i>PCDH7 </i>and rs17868256 were replicated in independent cohorts of Uyghurs or Southern Han Chinese. A quantitative model was developed to predict 3D faces based on 277 top GWAS SNPs. In hypothetic forensic scenarios, this model was found to significantly enhance the verification rate in males, suggesting a practical potential of related research.
DOI: 10.6084/m9.figshare.4284587
title: Scaffold ID files

description: IMG/M-relevant files needed to isolate scaffold sets for all 77 genomes from metagenomes
DOI: 10.6084/m9.figshare.4284584
title: A FASTA file containing 44 SSU rRNA genes with length &gt;300 base pairs, including 40 extracted from the 77 genomes from metagenomes

description: A FASTA file containing 44 SSU rRNA genes with length &gt;300 base pairs, including 40 extracted from the 77 genomes from metagenomes, plus 4 additional SSU rRNA genes identified in preliminary (i.e. non-reported) GFMs
DOI: 10.25392/leicester.data.12777365
title: Spirals, shadows and precession in HD 100453 - II: The hidden companion

description: Data to recreate the published plots/replicate most results. Codes used are publicly available or on request (Phantom, MCFOST and REBOUND). Specifically, files included:<br>- initial condition for Figure 2 + input file for Phantom simulation<br>- Phantom simulation files for Figure 4 + input file for MCFOST radiative transfer (command line used at end of this file)<br>- input commands for REBOUND to recreate Figure 5<br>
DOI: 10.6084/m9.figshare.4284578
title: All fasta files for bacterial and archaeal genomes from metagenomes, SURF microbial ecology project.

description: Sequence files for bacterial and archaeal genomes recovered from metagenomes at SURF, a deep terrestrial subsurface environment.
DOI: 10.6084/m9.figshare.4284578.v1
title: All fasta files for bacterial and archaeal genomes from metagenomes, SURF microbial ecology project.

description: Sequence files for bacterial and archaeal genomes recovered from metagenomes at SURF, a deep terrestrial subsurface environment.
DOI: 10.25392/leicester.data.12777365.v1
title: Spirals, shadows and precession in HD 100453 - II: The hidden companion

description: Data to recreate the published plots/replicate most results. Codes used are publicly available or on request (Phantom, MCFOST and REBOUND). Specifically, files included:<br>- initial condition for Figure 2 + input file for Phantom simulation<br>- Phantom simulation files for Figure 4 + input file for MCFOST radiative transfer (command line used at end of this file)<br>- input commands for REBOUND to recreate Figure 5<br>
DOI: 10.6084/m9.figshare.4284560
title: 2015-CALAN-PSTH-direction

description: Hummingbird direction data. Each file is an individual LM cell. <br>Data and R script of analyses in support of the study: "Neurons responsive to global visual motion have unique tuning properties in hummingbirds"<br><br>
DOI: 10.6084/m9.figshare.4284560.v1
title: 2015-CALAN-PSTH-direction

description: Hummingbird direction data. Each file is an individual LM cell. <br>Data and R script of analyses in support of the study: "Neurons responsive to global visual motion have unique tuning properties in hummingbirds"<br><br>
DOI: 10.6084/m9.figshare.4284533
title: SubjectNetworkTimeCourses.mat

description: The data consists of resting-state fMRI network time-courses of 405 subjects. Each time-course has 148 time-points (TR = 2seconds). 50 networks are estimated by Independent Components Analysis (ICA).
DOI: 10.6084/m9.figshare.4284533.v1
title: SubjectNetworkTimeCourses.mat

description: The data consists of resting-state fMRI network time-courses of 405 subjects. Each time-course has 148 time-points (TR = 2seconds). 50 networks are estimated by Independent Components Analysis (ICA).
DOI: 10.17608/k6.auckland.4284509
title: Data Files - TCoA-IIIA Secondary Schools

description: The SPSS data file containing abridged data information collected from the TCoA-III Long questionnaire administered in 2007 for secondary schools. The full questionnaire of 50 items was administered but only the abridged data was used for reporting. The AMOS data file is the confirmatory factor analysis input for the secondary school TCoA-IIIA data set. <br>Results were published in:Brown, G. T. L. (2011). Teachers' conceptions of assessment: Comparing primary and secondary teachers in New Zealand. <i>Assessment Matters, 3, </i>45-70.
DOI: 10.17608/k6.auckland.4284509.v1
title: Data Files - TCoA-IIIA Secondary Schools

description: The SPSS data file containing abridged data information collected from the TCoA-III Long questionnaire administered in 2007 for secondary schools. The full questionnaire of 50 items was administered but only the abridged data was used for reporting. The AMOS data file is the confirmatory factor analysis input for the secondary school TCoA-IIIA data set. <br>Results were published in:Brown, G. T. L. (2011). Teachers' conceptions of assessment: Comparing primary and secondary teachers in New Zealand. <i>Assessment Matters, 3, </i>45-70.
DOI: 10.17608/k6.auckland.4284503
title: Data Files - TCoA-III Long Primary School

description: The SPSS data file containing all data collected from TCoA-III Long questionnaire administered in 2002 for primary schools. <br>The AMOS data file is the confirmatory factor analysis input for the primary school TCoA-III Long data set. <br>Results were published in:Brown, G. T. L. (2002). <i>Teachers’ conceptions of assessment. </i>Unpublished doctoral dissertation, University of Auckland, Auckland, NZ. Available: http://hdl.handle.net/2292/63.<br>Results were published in:Brown, G. T. L. (2004). Teachers’ conceptions of assessment: Implications for policy and professional development. <i>Assessment in Education: Principles, Policy and Practice, 11</i>(3), 301-318. doi: 10.1080/0969594042000304609<br><br>
DOI: 10.6084/m9.figshare.4284470.v1
title: Reviravolta- A peleja de sete pragas com o demônio galego

description: Comic book about the brazilian traditions and oral fictions.
DOI: 10.6084/m9.figshare.4284380
title: Finding direction in the search for selection

description: Supplementary files for<br><b>Finding direction in the search for selection.</b>Thiltgen G, dos Reis M and Goldstein RA. (2016) Journal of Molecular Evolution, (in the press).DOI: 10.1007/s00239-016-9765-5
DOI: 10.6084/m9.figshare.4284380.v1
title: Finding direction in the search for selection

description: Supplementary files for<br><b>Finding direction in the search for selection.</b>Thiltgen G, dos Reis M and Goldstein RA. (2016) Journal of Molecular Evolution, (in the press).DOI: 10.1007/s00239-016-9765-5
DOI: 10.6084/m9.figshare.4284362
title: Dataset for: <i></i>Complete <sup>1</sup>H and <sup>13</sup>C NMR assignments of an uncommon 2,3-dihydroxynaphthoquinone isolated from <i>Cordia multispicata</i> (Cham.)

description: The chemical investigation of the hexane extract from the roots of <i>Cordia multispicata</i> resulted in the isolation of a new terpenoid 1,4-naphthoquinone, (<i>R</i>)-6-[10-(12,12,16-trimethyl-7-oxabicyclo[2.2.1]hept-2-yl]-2,3-dihydroxy-1,4-naphthalenedione (2,3-dihydroxy-cordiaquinone J), along with the known cordiaquinones B and J. The structure determination of the new compound was performed by spectroscopic methods (<sup>1</sup>H and <sup>13</sup>C NMR, COSY, HSQC and HMBC), FTIR and HRMS, in addition to direct comparison with NMR data of similar compounds previously described in the literature.
DOI: 10.6084/m9.figshare.4284362.v1
title: Dataset for: <i></i>Complete <sup>1</sup>H and <sup>13</sup>C NMR assignments of an uncommon 2,3-dihydroxynaphthoquinone isolated from <i>Cordia multispicata</i> (Cham.)

description: The chemical investigation of the hexane extract from the roots of <i>Cordia multispicata</i> resulted in the isolation of a new terpenoid 1,4-naphthoquinone, (<i>R</i>)-6-[10-(12,12,16-trimethyl-7-oxabicyclo[2.2.1]hept-2-yl]-2,3-dihydroxy-1,4-naphthalenedione (2,3-dihydroxy-cordiaquinone J), along with the known cordiaquinones B and J. The structure determination of the new compound was performed by spectroscopic methods (<sup>1</sup>H and <sup>13</sup>C NMR, COSY, HSQC and HMBC), FTIR and HRMS, in addition to direct comparison with NMR data of similar compounds previously described in the literature.
DOI: 10.6084/m9.figshare.4282871
title: War and HIV Dataset

description: Replication materials for doi: 10.1080/13623699.2016.1265872.<br>"Plague and war: Political breakdown and the spread of HIV." <i>Medicine, Conflict, and Survival</i>.
DOI: 10.6084/m9.figshare.4282847
title: Drug_Target Interaction_MMI

description: Prediction of Drug-Target Interaction by MMI, MACCS and NET. School of computer science and technology, Tianjin University
DOI: 10.6084/m9.figshare.4282853
title: Microstructured surface arrays for injection of zebrafish larvae

description: CAD files for the design of the zebrafish holders.
DOI: 10.6084/m9.figshare.4282847.v2
title: Drug_Target Interaction_MMI

description: Prediction of Drug-Target Interaction by MMI, MACCS and NET. School of computer science and technology, Tianjin University
DOI: 10.6084/m9.figshare.4282847.v1
title: Drug_Target Interaction_MMI

description: Prediction of Drug-Target Interaction by MMI, MACCS and NET. School of computer science and technology, Tianjin University
DOI: 10.6084/m9.figshare.4282835
title: How to calculate the non-synonymous to synonymous rate ratio of protein-coding coding genes under the Fisher-Wright mutation-selection framework

description: Source code and data necessary to reproduce the figures from the paper:<br><b>How to calculate the non-synonymous to synonymous rate ratio of protein-coding coding genes under the Fisher-Wright mutation-selection framework</b>dos Reis M. (2015) Biology Letters, 11: 20141031.DOI: 10.1098/rsbl.2014.1031 Data: DOI: 10.5061/dryad.3r3q4
DOI: 10.6084/m9.figshare.4282835.v1
title: How to calculate the non-synonymous to synonymous rate ratio of protein-coding coding genes under the Fisher-Wright mutation-selection framework

description: Source code and data necessary to reproduce the figures from the paper:<br><b>How to calculate the non-synonymous to synonymous rate ratio of protein-coding coding genes under the Fisher-Wright mutation-selection framework</b>dos Reis M. (2015) Biology Letters, 11: 20141031.DOI: 10.1098/rsbl.2014.1031 Data: DOI: 10.5061/dryad.3r3q4
DOI: 10.6084/m9.figshare.4282637
title: Rising temperatures may drive fishing-induced selection of low-performance phenotypes

description: Data for the paper titled "Rising temperatures may drive fishing-induced selection of low-performance phenotypes".<br>Individual values for metabolic parameters, exercise performance scores and recovery durations in different thermal treatment groups.
DOI: 10.6084/m9.figshare.4282634
title: Portal Rodent Trapping Forecasts for December 2016

description: This is a forecast made for the upcoming December 2 - 4 rodent trapping at the long-term Portal research site in southern Arizona. Four models were used to achieve forecasts with 90% prediction intervals. There are two forecast tables. One is for the site as a whole (total means across all plots, all treatment types), named "All". The other is for the 4 long-term Control plots only ("Controls").<br>Two naive models using the defaults in the forecast package in R were used to create forecasts for the total granivore captures (species="Total") over the next 12 trapping periods, the first being tomorrow.<br>The "Forecast" modelforecast(abundances$total,h=12,level=0.95,BoxCox.lambda(0),allow.multiplicative.trend=T)<br>The "AutoArima" modelforecast(auto.arima(abundances$total,lambda = 0),h=12,level=0.95,fan=T)<br>Species-level predictions, as well as another total captures prediction, were made using the tscount package in R.<br>The "NegBinom Time Series" model, by species (species codes are the first letter of the genus and species)<br>model=tsglm(abundances[[s]],model=list(past_obs=1,past_mean=11),distr="nbinom")<br>predict(model,12,level=0.9) <br>The "Poisson Environmental" model, by species (species codes are the first letter of the genus and species), using monthly minimum temperature, maximum tempurature, mean temperature, total precipitation from our on-site weather station, and NDVI from a compiled LANDSAT MODIS estimate. Model selection was based on AIC and performed for each species.<br>model=tsglm(abundances[[s]],model=list(past_obs=1,past_mean=11),distr="poisson",xreg=weather)<br>predict(model,12,level=0.9,newdata=weatherforecast)