cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/43cd6wt97r
title: Ulna Length Predicts Height Measured by Stadiometer Among Adults in Ghana

description: The attached dataset (N = 402) consists of anthropometric and demographic information meant to evaluate the degree of agreement between the height estimated from the ulna length measurement and the height measured with a stadiometer.
DOI: 10.17632/pttsxp7s6w
title: SWG - Satellite Water Gauging (a Python 2.7 program for determining water level from satellite data)

description: SWG stands for Satellite Water Gauging and is a multi-purpose program written in Python 2.7 for extracting, processing, analysing and displaying satellite altimetry (SA) data from a number of satellites including Envisat, Jason, Saral, Cryosat and Sentinel-3. I started building SWG in 2013 while spending a year at the Legos (Laboratoire d’Étude Géophysiques et Océanographiques Spatiales) as a platform to implement and test new approaches of SA data. It was always my intention to make the SWG codes available to whom is interested but it took me a few years to have a first “user friendly” version with all the necessary utilities.
DOI: 10.17632/x7rcj9yz65
title: Effect of Adlay Seed Extract on the Level of Neuroprotection Gene Expression in Human Nasal Orbital Mesenchymal Stem Cells

description: Introduction: Stem cells have gained attention for their potential as a promising approach for generating neurotrophins and advancing cell-based therapies for retinal degenerative diseases such as glaucoma. This study aimed to explore how adlay seed extract impacts the gene expression of key components within the neuroprotection pathway (NGF, TRKB, MAPK, PI3K) in human nasal orbital mesenchymal stem cells (OAMSCs).
Methods: Nasal OAMSCs, with a density of 106 cells/ 10 cm2, were subjected to a 24-hour exposure to adlay seed extracts (namely the methanolic (MeOH) and residual (Res) fractions at a concentration of 1 mg/ml). The control group received an identical solution without the extract at the same time and under the same circumstances. We next measured the relative expression levels of nerve growth factor (NGF), tyrosine receptor kinase B (TRKB), mitogen-activated protein kinase (MAPK), and phosphoinositide 3-kinase (PI3K) in the treated cells versus the control group using real-time Polymerase Chain Reaction (PCR).
Results: Our data revealed that both the MeOH and Res extracts of adlay seed led to a significant upregulation of NGF in nasal OAMSCs. MeOH extract also led to the overexpression of TRKB (the gene coding for BDNF receptor) in OAMSCs, while the other genes understudy, were not altered.
Conclusions: Our study highlighted the initial documentation of the stimulating impact of adlay extract on the transcriptional level of neurotrophin NGF and the TRKB in nasal OAMSCs. We also showed that the extraction method could significantly affect the molecular-level properties of adlay. This preliminary study can pave the ground for future advancements in the treatment of retinal neurodegenerative disorders and glaucoma.
DOI: 10.6084/m9.figshare.21368928.v1
title: GIS data of phytogeographical regions of Egypt

description: File geodatabase that has a polygon feature class showing the Egyptian phytogeographical regions.
DOI: 10.6084/m9.figshare.24457372.v1
title: Observation of the expression of quantitative ultrasound imaging parameters in patients with cancerous thyroid nodules and construction of a diagnostic model

description: Clinical data and color Doppler ultrasound characteristics of 194 patients with thyroid nodules who were seen in our hospital between October 1, 2022 to September 30, 2023 were retrospectively analyzed. A total of 194 patients who met the requirements were screened according to the inclusion and exclusion criteria, including 65 patients in the malignant group and 129 patients in the benign group. Clinical data such as age and gender, ultrasound features such as texture and internal echoes, and hemodynamic parameters such as EDV (End Diastolic Velocity) and PSV (Peak Systolic Velocity) were compared between the two groups. ROC curve analysis was used to determine the optimal classification criteria for the hemodynamic parameters, and independent diagnostic indicators were screened by multifactorial logistic regression analysis, based on which a diagnostic model was constructed.
DOI: 10.6084/m9.figshare.25584672.v1
title: CellRanger analyzed Visium data

description: Mouse lung tissues were perfused with PBS and fixed with 10% formalin via tracheal instillation at a constant pressure (15 cm H<sub>2</sub>O) and embedded in paraffin wax. Lung tissues were sectioned into 5 μm sections. Tissue sections were placed within the fiducial frame or the etched frames of the Capture Area on the 10X Genomics Visium Spatial slides. Slides were then deparaffinated, decrosslinked and stained with H & E staining kit (Millipore Sigma). Images were acquired under Keyence BZ-X800E slide scanner. The mouse whole transcriptome probe panel is added to the deparaffinized, stained, and decrosslinked tissues. After hybridization, single stranded ligation products were released and then captured on the Visium slides. Probes are extended by the addition of UMI, Spatial Barcode and partial Read 1, followed by library preparation and sample indexed. The library was sequenced on a Hiseq 4000 with pair-end 150bp (Novogene). The raw sequencing data was analyzed by CellRanger 7.0 (10X Genomics) and Seurat V4. Visium data was integrated with scRNA-seq data. The cell annotation was transferred from scRNA-seq.
DOI: 10.6084/m9.figshare.c.3608582_d1.v1
title: Additional file 1: Table S1. of Abiotic predictors and annual seasonal dynamics of Ixodes ricinus, the major disease vector of Central Europe

description: Overview of questing stages of Ixodes ricinus ticks recorded in different near-ground air temperature categories during the monitoring periods in 2001–2006. (DOCM 19 kb)
DOI: 10.17632/8rsnzt3529
title: MRS data for nicotine addiction

description: Differences in the ratios of glutamate (Glx) and N-asetyl-aspartate (NAA) per creatine (Glx/Creatine and NAA/Creatine) were observed by Magnetic Resonance Spectroscopy in the five brain regions of interest (nucleus accumbens, bilateral cerebellum, left medial prefrontal cortex, ventromedial prefrontal cortex, and bilateral precuneus) between the intervention (administered NAC + MET) and control groups (placebo +MET).
DOI: 10.17632/m4ndy7tcss
title: Topic-aware sentiment analysis

description: Data used in experiments with topic-aware sentiment analysis The code for the paper is currently in this repository (https://github.com/iskander-akhmetov/Topic-Aware-Sentiment-Analysis-of-News-Articles/). The source corpora we used, collected, or augmented: Original corpora: ------------------- 1. News articles scraped from different Kazakhstani online media resources and labeled by the experts: IAC_experts_labeled_corpus.zip 2. Kaggle Sentiment Analysis in Russian dataset: https://www.kaggle.com/c/sentiment-analysis-in-russian/data 3. TengriNews.kz articles corpus scraped: tengrinews_articles-all-clean_lt.zip Corpus lemmatized and augmented with topic labels (by us): ------------------------------------------------------------------ 1. IAC augmented: IAC_experts_labeled_corpus-lemmatized-topic.zip 2. Kaggle augmented: sentiment-analysis-in-russian-lemmatized-topic.zip 3. TengriNews augmented: tengrinews_articles-numword_norm-lemmatized-topic.zip
DOI: 10.17632/4mjpdt7r9f
title: Medical Mistrust Mediates the Relationship between Sexual Victimization and Physical Health Complaints

description: Objective. Women with a history of sexual victimization report poorer health outcomes across multiple domains, but additional research is needed to identify mechanisms by which sexual victimization affects health. Level of mistrust experienced by survivors towards the healthcare system could be one such factor. Medical mistrust could result in delayed access of healthcare or non-adherence to medical recommendations, which may exacerbate symptom development. Design and Main Outcome Measures. This study used an online, international sample of women, who were recruited from April 2018 to August 2018, to investigate whether medical mistrust may mediate the relationship between experiencing sexual victimization and higher physical health complaints. Results. Multivariate analyses indicated that sexual victimization was significantly associated with both physical health complaints and medical mistrust; further, medical mistrust emerged as a significant mediator of the relationship between sexual victimization and physical health complaints.
DOI: 10.17632/676thybbdh
title: A phytol εp-based core-top calibration to reconstruct past changes in atmospheric CO2

description: We investigated the relationship between photosynthetic fractionation (εp, calculated from the carbon isotopic composition of phytol (δ13C)) and dissolved CO2 concentrations (CO2 (aq)) using a globally distributed set of core top sediment and suspended particulate matter samples. The dataset here includes site locations, oceanographic variables, carbonate system parameters, δ13C, εp and CO2 (aq).
DOI: 10.6084/m9.figshare.12291248.v1
title: carbon intensity of vehicles.xlsx

description: The database contains the carbon emission intensity of the unit turnover of passenger and cargo vehicles in China, which can be used to calculate the carbon emission intensity baseline of the road transportation
DOI: 10.6084/m9.figshare.12810410.v1
title: East Asian-South Asian dataset (Landini et al. 2020)

description: Genome-wide genotype data generated for Asian populations relying on rice as a staple food and merged with reference datasets for worldwide populations as described in Landini et al. 2020 (Evolutionary Applications).<br><br>
DOI: 10.17632/5rcxbpyphz
title: FAPT: A Mathematica package for calculations in QCD Fractional Analytic Perturbation Theory

description: Abstract We provide here all the procedures in Mathematica which are needed for the computation of the analytic images of the strong coupling constant powers in Minkowski (A _ν (s; ^(nf)) and Aνglob(s)) and Euclidean (A _ν ( ^(Q2); ^(nf)) and Aνglob( ^(Q2))) domains at arbitrary energy scales (s and ^(Q2), correspondingly) for both schemes - with fixed number of active flavours ^(nf)=3,4,5,6 and the global one with taking into account all heavy-quark thresholds. These singularity-free coup... Title of program: FAPT Catalogue Id: AENJ_v1_0 Nature of problem The values of analytic images Abar ν (Q 2 ) and Abar ν (s) of the QCD running coupling powers α ν s (Q 2 ) in Euclidean and Minkowski regions, correspondingly, are determined through the spectral representation in the QCD Analytic Perturbation Theory (APT). In the program FAPT we collect all relevant formulas and various procedures which allow for a convenient evaluation of Abar ν (Q 2 ) and Abar ν (s) using numerical integrations of the relevant spectral densities. Versions of this program held in the CPC repository in Mendeley Data AENJ_v1_0; FAPT; 10.1016/j.cpc.2012.08.014 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/76n25fzj69
title: Related data of “traditional herbal medicine as a predictive variable: development and validation of prediction models for hepatocellular carcinoma recurrence after radical resection”

description: This is the related data of building models in artical "traditional herbal medicine as a predictive variable: development and validation of prediction models for hepatocellular carcinoma recurrence after radical resection "
DOI: 10.17632/86x5h37gtv
title: Data of tools for modelling energy systems

description: In recent years, there has been continuous growth in the development and use of energy modelling tools for exploring and defining strategies that could allow a smooth transition towards decarbonised and sustainable energy systems. These models are required in order to quantify the impacts of this transition and define potential pathways due to the complexity of the interactions between different energy vectors, including renewable energy sources and their intermittency. This information can be used by the scientific community, policymakers, and modellers interested in national or local energy planning. The data presented here describe 62 energy modelling tools and their classification according to different criteria defined by the authors. It was collected from the literature through a systematic review (PRISMA). It includes a description and classification of the most commonly used energy modelling tools according to the following categories: general purposes, specific purposes, analytical approach, underlying methodology, mathematical approach, geographical coverage, time horizon, time resolution, sector coverage, renewable technologies, modelling tool accessibility and appearance in literature.
DOI: 10.17632/zgsw84b2ff
title: Smart Home Dataset

description: The OpenSHS has 29 sensors which form part of the part of the headers of dataset. The sensors are placed on carpets, doors, lights, bed, couch, fridge, oven, tv, and wardrobes.
In addition to these sensors, the dataset also contains the activity column that describes what activity (eat, sleep, work, personal, other, or anomaly) being simulated.
Another column included in the dataset is the timestamps. This captures the time the sensor was activated and aggregated accordingly during the aggregation phase of the simulation process.
DOI: 10.6084/m9.figshare.24845742.v3
title: Dataset: Scattered tree death contributes to substantial forest loss in California

description: Tree mortality maps derived from aerial photos (NAIP) of 2020 in California for the paper titled Scattered tree death contributes to substantial forest loss in California. The dataset includes dead tree count per ha (100 m), median dead crown size per ha (100 m), percentage of dead canopy area per ha (100 m), percentage of brown-stage mortality per ha (100 m), eccentricity map (500 m), and percentage of tree mortality (240 m). The spatial coverage is the vegetated area (woody vegetation) in California. The projection system is EPSG:5072.Publication: <i>Cheng, Y.</i> <i>et al.</i> Scattered tree death contributes to substantial forest loss in California. <i>Nat. Commun. </i>(2024). https://doi.org/10.1038/s41467-024-44991-z<br>
DOI: 10.17632/np3tzxcpgc
title: Replication code for: Self-Declared Benchmarks and Fund Manager Intent: “Cheating” or Competing?

description: This replication package produces the results in Chen, H., Evans, R., and Sun, Y., "Self-Declared Benchmarks and Fund Manager Intent: 'Cheating' or Competing?", the Journal of Financial Economics, forthcoming
DOI: 10.6084/m9.figshare.14773584.v1
title: Supplemental Table S1.doc

description: Oligo nucleotide primers used in PCRs
DOI: 10.6084/m9.figshare.20173586.v1
title: Bacterial Proteins

description: FASTA files containing all bacterial proteins used to build databases in this study. "NCBI_Bacteria" contains publicly-available protein sequences. "genes_annotated" contains bacterial proteins translated from metagenomic sequencing of the samples.
DOI: 10.6084/m9.figshare.20712592.v1
title: Transcriptome analysis of testes gene expression to explore genetic diversity of Mangalica and Camborough boars

description: The testis, an important reproductive organ, is involved in spermatogenesis and steroid hormone secretion and has been the subject of a wide variety of studies. Pigs are often used as model animals for studies on human physiology and disease, and studies on the testicular development of pigs could shed light on human reproduction. Mangalica, an indigenous Hungarian pig breed, has reproductive traits that are different from those of commercial pig breeds. This specificity could reveal important differences in the cascades and reproductive genes between humans and other animals. In this study, we conducted RNA-sequencing analysis of the testes of 14 days old Mangalica and Camborough boars. We also performed clustering and pathway analysis of differentially expressed genes. We observed the differences in gene expression between the breeds, including Wnt signalling pathways involved in early testicular development. These datasets and analyses are expected to provide important gene sets for pig testis development that can be applied in future studies on human reproductive mechanisms.
DOI: 10.6084/m9.figshare.26196278.v1
title: RenewableEnergyQuestionsChatGPT.csv

description: This dataset has a set of renewable energy-related questions along with their answers collected from different online sources. For every collected question there is a ChatGPT answer. This dataset was used to evaluate the degree of similarity between human answers and ChatGPT answers to the same question. The dataset includes an id for every question and the source it collected from. Please cite this paper if you used this dataset:Systematic Evaluation of ChatGPT's Performance in Providing Renewable Energy Information
DOI: 10.6084/m9.figshare.28579865.v1
title: Supplementary materials for "The key quorum sensing gene <i>luxS</i> in <i>Lactobacillus acidophilus</i> CICC6074 and <i>Lactobacillus helveticus</i> R0052 mediates organic acid production and promotes protein hydrolysis in yogurt"

description: In this study, the effect of <i>luxS</i>, a key gene for QS, on the characteristic flavor of yogurt and its molecular mechanism in the co-fermentation of yogurt with Lactobacillus acidophilus CICC6074 and <i>Lactobacillus helveticus</i> R0052 engineered probiotics was investigated. Using the pMG36e plasmid as a vector and employing gene editing technology, we have initially constructed the <i>luxS</i> gene overexpression strains <i>L. acidophilus</i> CICC6074-pMG36e-<i>luxS</i> and<i> L. helveticus </i>R0052-pMG36e-<i>luxS</i>. Their effects on yogurt quality, including pH, titratable acidity, viable bacterial count, texture, water-holding capacity, and protein hydrolysis, were further explored. In addition, HS-SPME-GC-MS and UHPLC-MS, combined with metabolomics, were used to elucidate its effects and molecular mechanisms on the production of volatile and non-volatile flavor substances. By enhancing AI-2 signal transmission, we improved the flavor of yogurt, increased the survival rate and metabolic efficiency of probiotics, thereby enhancing the overall quality and functionality of the yogurt. This study provides a theoretical foundation and technical support for manipulating the LuxS/AI-2 system in yogurt production and probiotic engineering, offering a new approach for developing probiotic strains with enhanced health benefits, and holds broad application prospects.
DOI: 10.17632/csm5gsmr5t
title: Data presented in a pharmaceutical-related molecules dataset for reversed-phase chromatography retention time prediction built on combining pH and gradient time conditions - System 1

description: Presented data is introduced in the article "A pharmaceutical-related molecules dataset for reversed-phase chromatography retention time prediction built on combining pH and gradient time conditions". This is a subset with data acquired on chromatographic system 1.
DOI: 10.6084/m9.figshare.28840514.v1
title: A geospatial dataset of PFOS and PFOA occurrence records in China’s multi-media environments (2021–2024)

description: We provide a comprehensive dataset on the occurrence and distribution of PFOS and PFOA, comprising 2,653 records from 287 publications spanning the period from 2021 to 2024. This dataset offers detailed metadata including ecological categories, detected concentrations, collection methodologies, and geographic coordinates across various administrative levels.
DOI: 10.17632/f84wfs2j72
title: GCLM lactylation mediated by ACAT2 promotes ferroptosis resistance in KRASG12D-mutant cancer

description: This data consists of raw immunoblotting images from the article titled "KGCLM lactylation mediated by ACAT2 promotes ferroptosis resistance in KRASG12D-mutant cancer". KRAS mutations drive tumorigenesis, but their role in ferroptosis regulation remains unclear. Here, we construct KRASWT and KRASG12D-mutant cancer cells and demonstrate that G12D-mutant cells exhibit increased viability and reduced ferroptosis upon RSL3 or erastin treatment. These cells show diminished lipid peroxidation and mitochondrial damage, indicating ferroptosis resistance. KRASG12D activates MEK-ERK signaling to phosphorylate LDHA, enhancing glycolysis and lactate production. Exogenous lactate supplementation similarly protects wild-type cells from ferroptosis. Mechanistically, G12D mutation-derived lactate induces Glutamate-cysteine ligase modifier (GCLM) lactylation, a process catalysed by Acetyl-CoA Acetyltransferase 2 (ACAT2). Inhibition of GCLM lactylation either through the mutation of the lactylation site or by knockdown of ACAT2 diminished the enzymatic activity of Glutamate-cysteine ligase (GCL) and suppressed Glutathione synthesis. Importantly, ACAT2 depletion overcomes ferroptosis resistance in KRASG12D-mutant tumors in vivo. Our findings reveal a KRASG12D-driven metabolic adaptation linking GCLM lactylation to ferroptosis resistance, proposing ACAT2 inhibition as a therapeutic strategy for KRAS-mutant cancers.
DOI: 10.6084/m9.figshare.28087706.v1
title: <b>Extended Dataset Generated by the OEIS Integer Sequence A377045: Number of Partitions of Cuban Primes.</b>

description: This integer sequence was registered and published in the On-Line Encyclopedia of Integer Sequences (OEIS.org) Database on October 14 - 2024, under the OEIS code: A377045.<br><br>This sequence can be expressed with the help of two general formulas that uses the sequences:<br><br>1) A000041: a(n) is the number of partitions of n (the partition numbers).<br><br>2) A002407: Cuban primes: primes which are the difference of two consecutive cubes.<br><br>3) A121259: Numbers k such that (3*k^2 + 1)/4 is prime.<br><br>The two aforementioned general formulas are as follows: <br><br>a(n) = A000041(A002407(n)). <b> (1)</b><br><br>a(n) = A000041((3*A121259 (n)^2+1) / 4). <b> (2)</b><br><br>Some interesting properties of this sequence are:<br><br>◼ Number of partitions of prime numbers that are the difference of two consecutive cubes.<br><br>◼ Number of partitions of primes p such that p=(3*n^2 + 1) / 4 for some integer n (A121259).<br><br>◼ a(13) = ~1.49910(x10^43).<br><br>◼ The last known integer n in A121259 is 341 and corresponds to a(60) = ~1.59114(x10^323).<br><br>The numerical data showed on this dataset was generated by the following Mathematica program:<br><br>PartitionsP[Select[Table[(3 k^2 + 1)/4, {k, 500}], PrimeQ]] <br><br>The previous program was builded on Mathematica v13.3.0.<br><br><b>Note</b>: More mathematical details, graphics and technical information can be found in the notebook (.nb) & pdf files provided in this data pack.
DOI: 10.6084/m9.figshare.21554835.v1
title: AIZOO and MMD datasets.

description: This study aims to develop face mask detection model, and usingthe below datasets to test the proposed model. <br> 1) The first dataset is AIZOO (FMD): this datset is publicly available online created by JiangHongliang, and this dataset is under the license provided in the link below: https://github.com/AIZOOTech/FaceMaskDetection/blob/master/LICENSE This dataset is accessible using the link below: https://github.com/AIZOOTech/FaceMaskDetection <br> 2) The second datset is MMD: this dataset is publicly available online created by SHREYASH WAGHE. There is no specific license provided by the creator. This dataset is accessible using the link below: https://www.kaggle.com/datasets/shreyashwaghe/medical-mask-dataset
DOI: 10.17632/4pcfztds3r
title: original data for CP&PRMT5

description: original data for CP&PRMT5