cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3701593
title: Rare Book and Manuscript Library web archive collection derivatives

description: Web archive derivatives of the Rare Book and Manuscript Library collection from Columbia University Libraries. The derivatives were created with the Archives Unleashed Toolkit and Archives Unleashed Cloud. The <strong>cul-2766-parquet.tar.gz</strong> derivatives are in the Apache Parquet format, which is a columnar storage format. These derivatives are generally small enough to work with on your local machine, and can be easily converted to Pandas DataFrames. See this notebook for examples. <strong>Domains</strong> <pre><code class="language-java">.webpages().groupBy(ExtractDomainDF($"url").alias("url")).count().sort($"count".desc)</code></pre> Produces a DataFrame with the following columns: domain count <strong>Web Pages</strong> <pre><code class="language-java">.webpages().select($"crawl_date", $"url", $"mime_type_web_server", $"mime_type_tika", RemoveHTMLDF(RemoveHTTPHeaderDF(($"content"))).alias("content"))</code></pre> Produces a DataFrame with the following columns: crawl_date url mime_type_web_server mime_type_tika content <strong>Web Graph</strong> <pre><code class="language-java">.webgraph()</code></pre> Produces a DataFrame with the following columns: crawl_date src dest anchor <strong>Image Links</strong> <pre><code class="language-java">.imageLinks()</code></pre> Produces a DataFrame with the following columns: src image_url <strong>Binary Analysis</strong> Images PDFs Presentation program files Spreadsheets Word processor files<br> The <strong>cul-2766-auk.tar.gz </strong>derivatives<strong> </strong>are the standard set of web archive derivatives produced by the Archives Unleashed Cloud. <strong>Gephi </strong>file, which can be loaded into Gephi. It will have basic characteristics already computed and a basic layout. <strong>Raw Network</strong> file, which can also be loaded into Gephi. You will have to use that network program to lay it out yourself. <strong>Full text</strong> file. In it, each website within the web archive collection will have its full text presented on one line, along with information around when it was crawled, the name of the domain, and the full URL of the content. <strong>Domains count</strong> file. A text file containing the frequency count of domains captured within your web archive.
DOI: 10.5281/zenodo.3470137
title: Nuclear shadowing in DIS at electron-ion colliders: gluon shadowing grids

description: Data grids for <em>C<sub>eff</sub></em> a <em>R<sub>G</sub></em> accordign to arXiv:2003.04156 [hep-ph]. Data for an arbitrary value between the minimal and maximal value of input parameters can be obtained using multidimensional linear interpolation function, for example, <em>Multidimensional Linear Interpolation F104 from CERNlib</em>, https://cernlib.web.cern.ch/cernlib/. <strong>Abstract:</strong> We present a revision of predictions for nuclear shadowing in deep-inelastic scattering at small Bjorken $\x_{Bj}$ corresponding to kinematic regions accessible by the future experiments at electron-ion colliders. The nuclear shadowing is treated within the color dipole formalism based on the rigorous Green function technique. This allows incorporating naturally color transparency and coherence length effects, which are not consistently and properly included in present calculations. For the lowest $|q\bar q\rangle$ Fock component of the photon, our calculations<br> are based on an exact numerical solution of the evolution equation for the Green function. Here the magnitude of shadowing is tested using a realistic form for the nuclear density function, as well as various phenomenological models for the dipole cross section. The corresponding variation of the transverse size of the $q\bar q$ photon fluctuations is important for $\x_{Bj}\gtrsim 10^{-4}$, on the contrary with the most of other models, which use frequently only the eikonal approximation with the ``frozen" transverse size.<br> At $\x_{Bj}\lesssim 0.01$ we calculate within the same formalism also a shadowing correction for the higher Fock component of the photon containing gluons. The corresponding magnitudes of gluon shadowing correction are compared adopting different phenomenological dipole models. Our results are tested by available data from the E665 and NMC collaborations. Finally, the magnitude of nuclear shadowing is predicted for various kinematic regions that should be scanned by the future experiments at electron-ion colliders.
DOI: 10.5281/zenodo.3470138
title: Nuclear shadowing in DIS at electron-ion colliders: gluon shadowing grids

description: Data grids for <em>C<sub>eff</sub></em> a <em>R<sub>G</sub></em> accordign to arXiv:2003.04156 [hep-ph]. Data for an arbitrary value between the minimal and maximal value of input parameters can be obtained using multidimensional linear interpolation function, for example, <em>Multidimensional Linear Interpolation F104 from CERNlib</em>, https://cernlib.web.cern.ch/cernlib/. <strong>Abstract:</strong> We present a revision of predictions for nuclear shadowing in deep-inelastic scattering at small Bjorken $\x_{Bj}$ corresponding to kinematic regions accessible by the future experiments at electron-ion colliders. The nuclear shadowing is treated within the color dipole formalism based on the rigorous Green function technique. This allows incorporating naturally color transparency and coherence length effects, which are not consistently and properly included in present calculations. For the lowest $|q\bar q\rangle$ Fock component of the photon, our calculations<br> are based on an exact numerical solution of the evolution equation for the Green function. Here the magnitude of shadowing is tested using a realistic form for the nuclear density function, as well as various phenomenological models for the dipole cross section. The corresponding variation of the transverse size of the $q\bar q$ photon fluctuations is important for $\x_{Bj}\gtrsim 10^{-4}$, on the contrary with the most of other models, which use frequently only the eikonal approximation with the ``frozen" transverse size.<br> At $\x_{Bj}\lesssim 0.01$ we calculate within the same formalism also a shadowing correction for the higher Fock component of the photon containing gluons. The corresponding magnitudes of gluon shadowing correction are compared adopting different phenomenological dipole models. Our results are tested by available data from the E665 and NMC collaborations. Finally, the magnitude of nuclear shadowing is predicted for various kinematic regions that should be scanned by the future experiments at electron-ion colliders.
DOI: 10.5281/zenodo.3701571
title: Deformation of flexible ferromagnetic filaments under a rotating magnetic field

description: This repository contains experimental data and images related to the publication: A. Zaben, G. Kitenbergs, A. Cēbers (2020) Deformation of flexible ferromagnetic filaments under a rotating magnetic field. Journal of Magnetism and Magnetic Materials, 499, 166233 https://doi.org/10.1016/j.jmmm.2019.166233 / https://arxiv.org/abs/1908.02604. Excel files are results named corresponding to figure number in the publication. Root file '1' is for experimental images used for Fig.3, 4 and 5; where either the length is constant having file names as the value of the field strength or named with length values with fixed field strength for different frequencies. The images are named as the frequency value followed by the acquisition index. Data '2' is for images of relaxation experiments presented in Fig.6, for three different lengths and named as Experiment number (time index), having a frame rate of 150.
DOI: 10.5281/zenodo.3701572
title: Deformation of flexible ferromagnetic filaments under a rotating magnetic field

description: This repository contains experimental data and images related to the publication: A. Zaben, G. Kitenbergs, A. Cēbers (2020) Deformation of flexible ferromagnetic filaments under a rotating magnetic field. Journal of Magnetism and Magnetic Materials, 499, 166233 https://doi.org/10.1016/j.jmmm.2019.166233 / https://arxiv.org/abs/1908.02604. Excel files are results named corresponding to figure number in the publication. Root file '1' is for experimental images used for Fig.3, 4 and 5; where either the length is constant having file names as the value of the field strength or named with length values with fixed field strength for different frequencies. The images are named as the frequency value followed by the acquisition index. Data '2' is for images of relaxation experiments presented in Fig.6, for three different lengths and named as Experiment number (time index), having a frame rate of 150.
DOI: 10.5281/zenodo.3701425
title: What constitutes software? An Empirical, Descriptive Study of Artifacts - Reproduction Dataset

description: Dataset for reproducing the numbers, figures, and tables in the results section of the MSR 2020 paper <em>"What constitutes Software? An Empirical, Descriptive Study of Artifacts"</em>. The data is given in this release as extra file (<code>all_repo_files_categorized.csv.bz2</code>) as it is too big to be part of the repository directly.
DOI: 10.21227/mkyg-t967
title: Error-related potentials (Primary and secondary ErrP) and P300 event related potentials – BCI-Double-ErrP-Dataset

description: BCI-Double-ErrP-Dataset is an EEG dataset recorded while participants used a P300-based BCI speller. This speller uses a P300 post-detection based on Error-related potentials (ErrPs) to detect and correct errors (i.e. when the detected symbol does not match the user’s intention). After the P300 detection, an automatic correction is made when an ErrP is detected (this is called a “Primary ErrP”). The correction proposed by the system is also evaluated, eventually eliciting a “Secondary ErrP” if the correction is wrong. The overall approach is called “Double-ErrP detection and correction” [1]. The recorded datasets are useful to research the use of ErrPs to increase BCI reliability and to research how “Secondary ErrPs” can be used to increase the naturalness of Human-machine interaction. The datasets are also useful to research ErrP variability across subjects and across sessions in different days. The EEG signals were recorded from nine able-bodied participants (S1-S9) and one tetraplegic participant (P1) with medullar injury (C4/C5 level) with ages between 24 and 43 years old. However, the data set comprises only 8 subjects because two participants (S7 and S8) took part only in the first session of the experiments. Scalp EEG was recorded at 256 Hz with a g.USBamp bioamplifier (g.tec, Austria).A detailed description of the approach and experiments is given in [1] and a video in [2]. References[1] A. Cruz, G. Pires, U. Nunes (2018), "Double ErrP Detection for Automatic Error Correction in an ERP-Based BCI Speller", IEEE Transactions on Neural Systems and Rehabilitation Engineering, 99, January 2018, doi: 10.1109/TNSRE.2017.2755018. https://ieeexplore.ieee.org/document/8048036 [2] Demonstrative video in http://home.isr.uc.pt/~gpires/ErrP/ Acknowledgement: This data collection was supported in part by Project B-RELIABLE funded by FEDER/FNR/OE through programs CENTRO2020 and Portuguese foundation for science and technology (FCT), under grant SAICT/30935/2017.
DOI: 10.25386/genetics.11879025
title: Supplemental Material for Johri, Charlesworth, and Jensen, 2020

description: Supplemental Figures and Tables.
DOI: 10.25386/genetics.11879025.v1
title: Supplemental Material for Johri, Charlesworth, and Jensen, 2020

description: Supplemental Figures and Tables.
DOI: 10.17632/tjkv27skfh.1
title: Data for: Surface microbial geochemistry of the Beihanzhuang Oilfield, northern Jiangsu, China

description: Abundances of methane-oxidizing bacteria (MOBs) and butane-oxidizing bacteria (BOBs) in soil/sediment samples from the Beihanzhuang oilfield, northern Jiangsu, China.
DOI: 10.17632/r274bdnt22.1
title: Data for: ENVIRONMENTAL LIFE CYCLE ASSESSMENT OF OLIVE POMACE UTILIZATION IN TURKEY

description: result and CCaLC files
DOI: 10.17632/pk36xxhm94.1
title: Data for: ENVIRONMENTAL LIFE CYCLE ASSESSMENT OF UTILIZING STEM WASTE FOR BANANA PRODUCTION IN GREENHOUSES IN TURKEY

description: All the scenario files (CCaLC) and overall result file (MS Excel)
DOI: 10.5281/zenodo.3701454
title: Burke Library New York City Religions web archive collection derivatives

description: Web archive derivatives of the Burke Library New York City Religions collection from Columbia University Libraries. The derivatives were created with the Archives Unleashed Toolkit and Archives Unleashed Cloud. The <strong>cul-1945-parquet.tar.gz</strong> derivatives are in the Apache Parquet format, which is a columnar storage format. These derivatives are generally small enough to work with on your local machine, and can be easily converted to Pandas DataFrames. See this notebook for examples. <strong>Domains</strong> <pre><code class="language-java">.webpages().groupBy(ExtractDomainDF($"url").alias("url")).count().sort($"count".desc)</code></pre> Produces a DataFrame with the following columns: domain count <strong>Web Pages</strong> <pre><code class="language-java">.webpages().select($"crawl_date", $"url", $"mime_type_web_server", $"mime_type_tika", RemoveHTMLDF(RemoveHTTPHeaderDF(($"content"))).alias("content"))</code></pre> Produces a DataFrame with the following columns: crawl_date url mime_type_web_server mime_type_tika content <strong>Web Graph</strong> <pre><code class="language-java">.webgraph()</code></pre> Produces a DataFrame with the following columns: crawl_date src dest anchor <strong>Image Links</strong> <pre><code class="language-java">.imageLinks()</code></pre> Produces a DataFrame with the following columns: src image_url <strong>Binary Analysis</strong> Images PDFs Presentation program files Spreadsheets Text files Word processor files<br> The <strong>cul-1945-auk.tar.gz </strong>derivatives<strong> </strong>are the standard set of web archive derivatives produced by the Archives Unleashed Cloud. <strong>Gephi </strong>file, which can be loaded into Gephi. It will have basic characteristics already computed and a basic layout. <strong>Raw Network</strong> file, which can also be loaded into Gephi. You will have to use that network program to lay it out yourself. <strong>Full text</strong> file. In it, each website within the web archive collection will have its full text presented on one line, along with information around when it was crawled, the name of the domain, and the full URL of the content. <strong>Domains count</strong> file. A text file containing the frequency count of domains captured within your web archive.
DOI: 10.5281/zenodo.3701455
title: Burke Library New York City Religions web archive collection derivatives

description: Web archive derivatives of the Burke Library New York City Religions collection from Columbia University Libraries. The derivatives were created with the Archives Unleashed Toolkit and Archives Unleashed Cloud. The <strong>cul-1945-parquet.tar.gz</strong> derivatives are in the Apache Parquet format, which is a columnar storage format. These derivatives are generally small enough to work with on your local machine, and can be easily converted to Pandas DataFrames. See this notebook for examples. <strong>Domains</strong> <pre><code class="language-java">.webpages().groupBy(ExtractDomainDF($"url").alias("url")).count().sort($"count".desc)</code></pre> Produces a DataFrame with the following columns: domain count <strong>Web Pages</strong> <pre><code class="language-java">.webpages().select($"crawl_date", $"url", $"mime_type_web_server", $"mime_type_tika", RemoveHTMLDF(RemoveHTTPHeaderDF(($"content"))).alias("content"))</code></pre> Produces a DataFrame with the following columns: crawl_date url mime_type_web_server mime_type_tika content <strong>Web Graph</strong> <pre><code class="language-java">.webgraph()</code></pre> Produces a DataFrame with the following columns: crawl_date src dest anchor <strong>Image Links</strong> <pre><code class="language-java">.imageLinks()</code></pre> Produces a DataFrame with the following columns: src image_url <strong>Binary Analysis</strong> Images PDFs Presentation program files Spreadsheets Text files Word processor files<br> The <strong>cul-1945-auk.tar.gz </strong>derivatives<strong> </strong>are the standard set of web archive derivatives produced by the Archives Unleashed Cloud. <strong>Gephi </strong>file, which can be loaded into Gephi. It will have basic characteristics already computed and a basic layout. <strong>Raw Network</strong> file, which can also be loaded into Gephi. You will have to use that network program to lay it out yourself. <strong>Full text</strong> file. In it, each website within the web archive collection will have its full text presented on one line, along with information around when it was crawled, the name of the domain, and the full URL of the content. <strong>Domains count</strong> file. A text file containing the frequency count of domains captured within your web archive.
DOI: 10.25386/genetics.11952225
title: Supplemental Material for Ramstein et al., 2020

description: Table S1 describes interactions between genotypes and panels. Table S2 describes high-confidence QTL effects in Ames-H and NAM-H, based on GWAS models and BSLMMs. Table S3 shows summary statistics about genomic inbreeding in Ames-H. Table S4 describes the difference in accuracy from Ames×PHZ51 to Ames×B47 for prediction in NAM-H. Table S5 describes prediction accuracy in NAM-H by directional effects of inbreeding in Ames-H. Table S6 describes prediction accuracy from GWAS models. Table S7 presents the significance of variance partition by panel and functional feature. Table S8 describes genomic heritability captured by functional classes in functional enrichment models. Table S9 describes genomic prediction accuracy of functional enrichment models. Figure S1 shows the population clusters in Ames-H, inferred by k-means clustering (<i>k</i> = 4). Figure S2 depicts linkage disequilibrium in Ames-H and NAM-H. Figure S3 shows allele frequency among female parents in Ames-H and NAM-H. Figure S4 shows the significance of marginal additive effects in GWAS in Ames-H and NAM-H. Figure S5 shows the SNP enrichment by bin, for structural and evolutionary features in Ames-H and NAM-H. Figure S6 shows the SNP enrichment by bin, for structural and evolutionary features in Ames-H and NAM-H, while accounting for enrichment by gene proximity.
DOI: 10.25386/genetics.11952225.v1
title: Supplemental Material for Ramstein et al., 2020

description: Table S1 describes interactions between genotypes and panels. Table S2 describes high-confidence QTL effects in Ames-H and NAM-H, based on GWAS models and BSLMMs. Table S3 shows summary statistics about genomic inbreeding in Ames-H. Table S4 describes the difference in accuracy from Ames×PHZ51 to Ames×B47 for prediction in NAM-H. Table S5 describes prediction accuracy in NAM-H by directional effects of inbreeding in Ames-H. Table S6 describes prediction accuracy from GWAS models. Table S7 presents the significance of variance partition by panel and functional feature. Table S8 describes genomic heritability captured by functional classes in functional enrichment models. Table S9 describes genomic prediction accuracy of functional enrichment models. Figure S1 shows the population clusters in Ames-H, inferred by k-means clustering (<i>k</i> = 4). Figure S2 depicts linkage disequilibrium in Ames-H and NAM-H. Figure S3 shows allele frequency among female parents in Ames-H and NAM-H. Figure S4 shows the significance of marginal additive effects in GWAS in Ames-H and NAM-H. Figure S5 shows the SNP enrichment by bin, for structural and evolutionary features in Ames-H and NAM-H. Figure S6 shows the SNP enrichment by bin, for structural and evolutionary features in Ames-H and NAM-H, while accounting for enrichment by gene proximity.
DOI: 10.15468/mggofc
title: A new species of Hornylia Wygodzinsky (Hemiptera, Heteroptera, Reduviidae, Emesinae) from Thailand

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Zhuo, Li, Hu, Cai, Wanzhi (2020): A new species of Hornylia Wygodzinsky (Hemiptera, Heteroptera, Reduviidae, Emesinae) from Thailand. ZooKeys 917: 105-115, DOI: http://dx.doi.org/10.3897/zookeys.917.46887, URL: http://dx.doi.org/10.3897/zookeys.917.46887
DOI: 10.15468/x41nov
title: New species of Furculanurida (Collembola, Neanuridae, Pseudachorutinae) from the Luquillo Mountains, Puerto Rico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ospina-Sanchez, Claudia M., Palacios-Vargas, Jose G., Gonzalez, Grizelle (2020): New species of Furculanurida (Collembola, Neanuridae, Pseudachorutinae) from the Luquillo Mountains, Puerto Rico. ZooKeys 917: 1-13, DOI: http://dx.doi.org/10.3897/zookeys.917.33020, URL: http://dx.doi.org/10.3897/zookeys.917.33020
DOI: 10.15468/mfthjg
title: Anomoneura taiwanica sp. nov. (Hemiptera, Psylloidea, Psyllidae), a new jumping plant-louse species from Taiwan associated with Morus australis (Moraceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cho, Geonho, Liao, Yi-Chang, Lee, Seunghwan, Yang, Man-Miao (2020): Anomoneura taiwanica sp. nov. (Hemiptera, Psylloidea, Psyllidae), a new jumping plant-louse species from Taiwan associated with Morus australis (Moraceae). ZooKeys 917: 117-126, DOI: http://dx.doi.org/10.3897/zookeys.917.36727, URL: http://dx.doi.org/10.3897/zookeys.917.36727
DOI: 10.15468/qpzsxj
title: First records of the genera Sivaloka Distant, 1906, with two new species from China, and description of a new species of genus Kodaianella Fennah, 1956 (Hemiptera, Fulgoromorpha, Issidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chang, Zhi-Min, Yang, Lin, Chen, Xiang-Sheng (2020): First records of the genera Sivaloka Distant, 1906, with two new species from China, and description of a new species of genus Kodaianella Fennah, 1956 (Hemiptera, Fulgoromorpha, Issidae). ZooKeys 917: 85-104, DOI: http://dx.doi.org/10.3897/zookeys.917.47326, URL: http://dx.doi.org/10.3897/zookeys.917.47326
DOI: 10.5281/zenodo.3701529
title: Enzyme Comission data used in QfO Benchmarking

description: Enzyme Comission data used in the EC number challenge of the 2018 Quest for Orthologs (QfO Benchmarking workflow (https://github.com/qfo/benchmark-webservice/tree/elixir).
DOI: 10.5281/zenodo.3701530
title: Enzyme Comission data used in QfO Benchmarking

description: Enzyme Comission data used in the EC number challenge of the 2018 Quest for Orthologs (QfO Benchmarking workflow (https://github.com/qfo/benchmark-webservice/tree/elixir).
DOI: 10.15468/7zqakf
title: Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity

description: This dataset contains the digitized treatments in Plazi based on the original journal article Korshunova, Tatiana, Malmberg, Klas, Prkic, Jakov, Petani, Alen, Fletcher, Karin, Lundin, Kennet, Martynov, Alexander (2020): Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity. ZooKeys 917: 15-50, DOI: http://dx.doi.org/10.3897/zookeys.917.47444, URL: http://dx.doi.org/10.3897/zookeys.917.47444
DOI: 10.15468/h0k4qs
title: Two new species of the genus Opopaea (Araneae, Oonopidae) from Myanmar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tong, Yanfeng, Chen, Zengliang, Li, Shuqiang (2020): Two new species of the genus Opopaea (Araneae, Oonopidae) from Myanmar. ZooKeys 917: 51-61, DOI: http://dx.doi.org/10.3897/zookeys.917.48924, URL: http://dx.doi.org/10.3897/zookeys.917.48924