cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/ea10a684641fcf2b14a5d616dccc9d28
title: Light Environment in Hemlock Removal Experiment at Harvard Forest since 2003

description: The impending loss of hemlock trees due to hemlock woolly adelgid (Adelges tsugae) infestation is expected to lead to changes in the light environment of the forest understory. These changes will both drive succession and will themselves be altered by successional processes. The light reaching the forest floor is measured using hemispherical canopy photographs. Photographs were taken in summer of 2003 and in December 2004 and May 2005 (both deciduous-tree leaf-off condition), prior to the application of the logging and girdling treatments, and then in September 2005 (deciduous tree leaf-on condition) after logging and girdling. Subsequent photographic series will be taken annually in spring (leaf-off) and summer/fall (leaf-on).
DOI: 10.18709/perscido.2022.01.ds364
title: The VLSAT-3 (Very Large SAT) Benchmark Suite

description: The VLSAT-3 benchmark suite (where "VL" stands for "Very Large") is a collection of 1200 SMT formulas to be used as benchmarks in scientific experiments and software competitions. These SMT formulas have been obtained from the automatic conversion into Nested-Unit Petri Nets (NUPNs) of a large collection of Petri nets modelling real-life problems, such as communication protocols and concurrent systems. More than 90% of these benchmarks have been used during the 16th International Satisfiability Modulo Theories Competition (SMT-COMP 2021).
DOI: 10.6084/m9.figshare.6729122.v3
title: Cellular senescence induces replication stress with almost no affect on DNA replication timing

description: Organismal aging entails a gradual decline of normal physiological functions and a major contributor to this decline is withdrawal of the cell cycle, known as senescence. Senescence can result from telomere diminution leading to a finite number of population doublings, known as replicative senescence (RS), or from oncogene overexpression, as a protective mechanism against cancer. Senescence is associated with large-scale chromatin re-organization and changes in gene expression. Replication stress is a complex phenomenon, defined as the slowing or stalling of replication fork progression and/or DNA synthesis, which has serious implications for genome stability, and consequently in human diseases. Aberrant replication fork structures activate the replication stress response leading to the activation of dormant origins, which is thought to be a safeguard mechanism to complete DNA replication on time. However, the relationship between replicative stress and the changes in the spatiotemporal program of DNA replication in senescence progression remains unclear. Here, we studied the DNA replication program during senescence progression in proliferative and pre-senescent cells from donors of various ages by single DNA fiber combing of replicated DNA, origin mapping by sequencing short nascent strands and genome-wide profiling of replication timing (TRT). We demonstrate that, progression into RS leads to reduced replication fork rates and activation of dormant origins, which are the hallmarks of replication stress. However, with the exception of a delay in RT of the <i>CREB5</i> gene in all pre-senescent cells, RT was globally unaffected by replication stress during entry into either oncogene-induced or RS. Consequently, we conclude that RT alterations associated with physiological and accelerated aging, do not result from senescence progression. Our results clarify the interplay between senescence, aging and replication programs and demonstrate that RT is largely resistant to replication stress.
DOI: 10.6084/m9.figshare.6729122.v2
title: Cellular senescence induces replication stress with almost no affect on DNA replication timing

description: Organismal aging entails a gradual decline of normal physiological functions and a major contributor to this decline is withdrawal of the cell cycle, known as senescence. Senescence can result from telomere diminution leading to a finite number of population doublings, known as replicative senescence (RS), or from oncogene overexpression, as a protective mechanism against cancer. Senescence is associated with large-scale chromatin re-organization and changes in gene expression. Replication stress is a complex phenomenon, defined as the slowing or stalling of replication fork progression and/or DNA synthesis, which has serious implications for genome stability, and consequently in human diseases. Aberrant replication fork structures activate the replication stress response leading to the activation of dormant origins, which is thought to be a safeguard mechanism to complete DNA replication on time. However, the relationship between replicative stress and the changes in the spatiotemporal program of DNA replication in senescence progression remains unclear. Here, we studied the DNA replication program during senescence progression in proliferative and pre-senescent cells from donors of various ages by single DNA fiber combing of replicated DNA, origin mapping by sequencing short nascent strands and genome-wide profiling of replication timing (TRT). We demonstrate that, progression into RS leads to reduced replication fork rates and activation of dormant origins, which are the hallmarks of replication stress. However, with the exception of a delay in RT of the <i>CREB5</i> gene in all pre-senescent cells, RT was globally unaffected by replication stress during entry into either oncogene-induced or RS. Consequently, we conclude that RT alterations associated with physiological and accelerated aging, do not result from senescence progression. Our results clarify the interplay between senescence, aging and replication programs and demonstrate that RT is largely resistant to replication stress.
DOI: 10.6084/m9.figshare.6729122
title: Cellular senescence induces replication stress with almost no affect on DNA replication timing

description: Organismal aging entails a gradual decline of normal physiological functions and a major contributor to this decline is withdrawal of the cell cycle, known as senescence. Senescence can result from telomere diminution leading to a finite number of population doublings, known as replicative senescence (RS), or from oncogene overexpression, as a protective mechanism against cancer. Senescence is associated with large-scale chromatin re-organization and changes in gene expression. Replication stress is a complex phenomenon, defined as the slowing or stalling of replication fork progression and/or DNA synthesis, which has serious implications for genome stability, and consequently in human diseases. Aberrant replication fork structures activate the replication stress response leading to the activation of dormant origins, which is thought to be a safeguard mechanism to complete DNA replication on time. However, the relationship between replicative stress and the changes in the spatiotemporal program of DNA replication in senescence progression remains unclear. Here, we studied the DNA replication program during senescence progression in proliferative and pre-senescent cells from donors of various ages by single DNA fiber combing of replicated DNA, origin mapping by sequencing short nascent strands and genome-wide profiling of replication timing (TRT). We demonstrate that, progression into RS leads to reduced replication fork rates and activation of dormant origins, which are the hallmarks of replication stress. However, with the exception of a delay in RT of the <i>CREB5</i> gene in all pre-senescent cells, RT was globally unaffected by replication stress during entry into either oncogene-induced or RS. Consequently, we conclude that RT alterations associated with physiological and accelerated aging, do not result from senescence progression. Our results clarify the interplay between senescence, aging and replication programs and demonstrate that RT is largely resistant to replication stress.
DOI: 10.25345/c5dw1k
title: MassIVE MSV000088634 - Zika virus infection activates cellular immune responses in Sertoli cells and dysregulates proteins involved in carbohydrate metabolism and cardiovascular disease
title: Zika virus (ZIKV) causes congenital brain abnormalities and Guillain-Barre syndrome. It mainly transmits by Aedes mosquitoes, but infections also are linked to sexual transmissions. ZIKV can proliferate in human Sertoli cells (HSerC) for several weeks in vitro, suggesting that it might be a reservoir for persistent ZIKV infection. This study determined the proteomic changes in HSerC during ZIKV infections by TMT-mass spectrometry analysis. In Sertoli cells, a total of 4416 unique proteins were significantly dis-regulated across 3, 5, and 7 days after ZIKV infection. The dis-regulated proteins include enzymes, transcription regulators, transporters, kinases, peptidases, transmembrane receptors, cytokines, ion channels, and growth factors. Many of those proteins are involved in antiviral response, antigen presentation, and immune cell activation.
DOI: 10.34740/kaggle/dsv/3003741
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.1291503
title: A general framework for optimizing arterial spin labeling MRI experiments

description: This repository contains the simulation data, preprocessed in vivo data, and analysis code used in the Magnetic Resonance in Medicine article titled "A general framework for optimizing arterial spin labeling MRI experiments" (https://doi.org/10.1002/mrm.27580). Please cite this article if you use this code or data in your work.
DOI: 10.5281/zenodo.1291502
title: A general framework for optimizing arterial spin labeling MRI experiments

description: This repository contains the simulation data, preprocessed in vivo data, and analysis code used in the Magnetic Resonance in Medicine article titled "A general framework for optimizing arterial spin labeling MRI experiments" (https://doi.org/10.1002/mrm.27580). Please cite this article if you use this code or data in your work.
DOI: 10.5281/zenodo.3986788
title: Designing and Comparing Optimized Pseudo-Continuous Arterial Spin Labeling Protocols for Measurement of Cerebral Blood Flow

description: This repository contains the the simulation data, preprocessed in vivo data, and analysis code used in the NeuroImage article titled 'Designing and Comparing Optimized Pseudo-Continuous Arterial Spin Labeling Protocols for Measurement of Cerebral Blood Flow' (https://doi.org/10.1016/j.neuroimage.2020.117246). Please cite this article if you use this code or data in your work.
DOI: 10.5281/zenodo.3986787
title: Designing and Comparing Optimized Pseudo-Continuous Arterial Spin Labeling Protocols for Measurement of Cerebral Blood Flow

description: This repository contains the the simulation data, preprocessed in vivo data, and analysis code used in the NeuroImage article titled 'Designing and Comparing Optimized Pseudo-Continuous Arterial Spin Labeling Protocols for Measurement of Cerebral Blood Flow' (https://doi.org/10.1016/j.neuroimage.2020.117246). Please cite this article if you use this code or data in your work.
DOI: 10.5281/zenodo.5817387
title: Termini e condizioni realizzazione sito web

description: Template per termini e condizioni realizzazione sito web
DOI: 10.5281/zenodo.5817386
title: Termini e condizioni realizzazione sito web

description: Template per termini e condizioni realizzazione sito web
DOI: 10.5281/zenodo.5817375
title: A GC-IRMS method for measuring sulfur isotope ratios of carbonyl sulfide from small air samples

description: This dataset contains supporting files, figures and datasets for the method of sulfur isotope measurements of carbonyl sulfide and ambient air measurements in the Netherlands during 2020 and 2021.
DOI: 10.21227/vdqc-sh74
title: Multimodal Detection of Dark Ships

description: TBD
DOI: 10.5281/zenodo.5508801
title: The role of geological mouth islands on the morphodynamics of back-barrier tidal basins

description: Model input files associated with "The role of geological mouth islands on the morphodynamics of back-barrier tidal basins".
DOI: 10.5281/zenodo.5508800
title: The role of geological mouth islands on the morphodynamics of back-barrier tidal basins

description: Model input files associated with "The role of geological mouth islands on the morphodynamics of back-barrier tidal basins".
DOI: 10.21227/x84r-vh21
title: Hybrid Synthetic Data that Outperforms Real Data in ObjectNet 

description: We present below a sample dataset collected using our framework for synthetic data collection that is efficient in terms of time taken to collect and annotate data, and which makes use of free and open source software tools and 3D assets. Our approach provides a large number of systematic variations in synthetic image generation parameters. The approach is highly effective, resulting in a deep learning model with a top-1 accuracy of 72% on the ObjectNet data, which is a new state-of-the-art result.
DOI: 10.6084/m9.figshare.17216645
title: Data from methodology for maintaining adult solitary bee Centris analis under laboratory conditions

description: Data from the article "Method for maintaining adult solitary bee <i>Centris analis</i> under laboratory conditions" accepted in the Methods in Ecology and Evolution journal <br>
DOI: 10.6084/m9.figshare.17216645.v4
title: Data from methodology for maintaining adult solitary bee Centris analis under laboratory conditions

description: Data from the article "Method for maintaining adult solitary bee <i>Centris analis</i> under laboratory conditions" accepted in the Methods in Ecology and Evolution journal <br>
DOI: 10.6084/m9.figshare.17216645.v3
title: Data from methodology for maintaining adult solitary bee Centris analis under laboratory conditions

description: Data from the article "Method for maintaining adult solitary bee <i>Centris analis</i> under laboratory conditions" accepted in the Methods in Ecology and Evolution journal <br>
DOI: 10.21227/q7vg-gc23
title: Software Component Size Dataset

description: Component based software development (CBSD) is a trend in the indusrty. This dataset contains the size of the components in various softwares viz. WEKA, Apache crypto library, Apache Codec library and basic linear alebra library by M. Elsheimy. The first three are in Java and last one is in C# programming languages, From the WEKA repository, 11 packages have been considered,
DOI: 10.21227/9dgb-z777
title: ExoNet Database: Wearable Camera Images of Human Locomotion Environments

description: Abstract: Recent advances in computer vision and deep learning have allowed researchers to develop environment recognition systems for robotic leg prostheses and exoskeletons. However, small-scale and private training datasets have impeded the widespread development and dissemination of image classification algorithms (e.g., convolutional neural networks) for recognizing human walking environments. To address these limitations, we developed "ExoNet" - the first open-source, large-scale hierarchical database of high-resolution wearable camera images (i.e., egocentric perception) of legged locomotion environments. Unparalleled in both scale and diversity, ExoNet contains over 5.6 million RGB images of indoor and outdoor real-world walking environments, which were collected using a lightweight wearable camera system throughout the summer, fall, and winter seasons. Approximately 923,000 images in ExoNet were human-annotated using a novel, 12-class hierarchical labelling architecture. Available publicly through IEEE DataPort, ExoNet offers an unprecedented shared platform to train, develop, and compare next-generation image classification algorithms for human locomotion environment recognition. In addition to robotic leg prostheses and exoskeletons, applications of ExoNet could extend to humanoids, autonomous legged robots, powered wheelchairs, and other mobility assistive technologies.References:1) Laschowski B, McNally W, Wong A, and McPhee J. (2020). ExoNet Database: Wearable Camera Images of Human Locomotion Environments. Frontiers in Robotics and AI, 7, 562061. DOI: 10.3389/frobt.2020.562061.2) Laschowski B, McNally W, Wong A, and McPhee J. (2021). Computer Vision and Deep Learning for Environment-Adaptive Control of Robotic Lower-Limb Exoskeletons. Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). DOI: 10.1109/EMBC46164.2021.9630064. 3) Laschowski B, McNally W, Wong A, and McPhee J. (2021). Environment Classification for Robotic Leg Prostheses and Exoskeletons using Deep Convolutional Neural Networks. Frontiers in Neurorobotics. DOI: 10.3389/fnbot.2021.730965.
DOI: 10.21227/7cas-kv38
title: Duty Cycle - Monitor DU3 Outdoor Measurements (2021)

description: This data set, contains all the Duty Cycle (DC) measurements (Wi-Fi Channels 1 - 12 for 2.4GHz band), which exported through Energy Detection from Monitor DU3. The data set contains measurements between 2021-01-01 to 2021-12-20.
DOI: 10.21227/eva3-ws91
title: Extracted Experimental Data of LDMOS Transistors

description: We collected BV , RON;SP from over 150 publications reported since the year 2000 and classified them according to their - main- topology and process type.
DOI: 10.21227/dmqv-dv11
title: Change Detection in Multilook Polarimetric SAR Imagery With DRT Statistic

description: Nothing
DOI: 10.21227/7zch-5585
title: Electronic nose dataset for recogniton of eight liquor types

description: The data set collected using a self-designed electronic nose (e-nose) involved eight Chinese liquor types, which are LanJinJiu with 38% alcohol concentration (LJJ38), LanJinJiu with 48% alcohol concentration (LJJ48), DaoHuaXiang with 42% alcohol concentration (DHX), LuZhouLaoJiao with 38% alcohol concentration (LZLJ), MianZhuDaQu with 38% alcohol concentration (MZDQ), QingJiu with 38% alcohol concentration (QJ), ShiLiXiang (SLX) with 40% alcohol concentration and BianFengHu with 40% alcohol concentration (BFH).
DOI: 10.21227/ykh0-0w91
title: BRT Istanbul measurements

description: BRT Dataset for IEEE VTS
DOI: 10.21227/9zzb-2943
title: Ride-hailing DCFC Demands by US City

description: Simulation results from EVI-OnDemand estimating need for infrastructure to support electric ride-hailing vehicles in the US.
DOI: 10.21227/h2j6-bf33
title: A Decision Support System for Hedge Transactions in Electrical Energy Commercialization

description: Agents in the electricity sector may find themselves in a short position in the market at times. In this case, they have the option of hedging their risk by contracting part or all of their position through fixed-price forward contracts. If the hedge is only partial, the non-contracted portion must be settled at an uncertain future spot price, which exposes the agent to price risk. On the other hand, while a full hedge eliminates the risk, it eliminates potential gains. This Python code proposes an optimization model that maximizes the agent´s returns subject to a CVaR risk preference function to support the hedging decision.
DOI: 10.21227/t7jt-0380
title: Pune City Zonal Mean for 2019-20

description: The following data is accumulated zonal mean statistic for Pune city representing the time series of satellite data for Landsat, EBBI, NDVI, Wind Speed and Direction, MODIS day and night time LST observations.
DOI: 10.21227/tary-nv39
title: Kernel Regression Imputation in Manifolds: Videos of dMRI data

description: Representative videos of dMRI data from the numerical tests of the paper: "Kernel Regression Imputation in Manifolds via Bi-Linear Modeling: The Dynamic-MRI Case," by K. Slavakis, G. N. Shetty, L. Cannelli, G. Scutari,  U. Nakarmi, and L. Ying.
DOI: 10.21227/fn4b-gg55
title: liquor types

description: The name of the data set is changed to 'Electronic nose dataset for recogniton of eight liquor types'.
DOI: 10.21227/e2tf-5095
title: Magnetic Design Considerations for High-Power Wireless Charging Systems: 50 kW Experiment

description: This paper proposes methods of predicting and preventing thermal failure within high-power ferrite structures of electric vehicle (EV) wireless charging inductive power transfer (IPT) by improving their ferrite layouts. A high-power IPT magnetic design suitable for wirelessly charging an EV at 50 kW using a heuristic approach is presented where the chosen design achieves reduced heating within the magnetic structure. Recommendations are made that both avoid ferrite fracturing due to magnetic hotspots and cause temperature differentials across ferrite tiles, and regarding airgap distribution between ferrite tiles to reduce loss-inducing circulating flux within the ferrite structure without reducing coupling. Power transfer was simulated in ANSYS and PLECS under misaligned conditions, and validated experimentally with 93.7% system efficiency. Thermal tests performed under rated volt-amps found the magnetics temperatures (after 30 minutes) could be reduced from 168 to 67 °C using an improved magnetic layout that reduced the thermal gradients within the ferrite tiles by 70%. Leakage fluxes were targeted and validated to be below 15 μT, 950 mm from the center of the vehicle under rated power and worst-case misaligned conditions.
DOI: 10.21227/470m-1p86
title: Magnetic Design Considerations for High Power Wireless Charging Systems (TEST) 

description: This paper proposes methods of predicting and preventing thermal failure within high-power ferrite structures of electric vehicle (EV) wireless charging inductive power transfer (IPT) by improving their ferrite layouts. A high-power IPT magnetic design suitable for wirelessly charging an EV at 50 kW using a heuristic approach is presented where the chosen design achieves reduced heating within the magnetic structure. Recommendations are made that both avoid ferrite fracturing due to magnetic hotspots and cause temperature differentials across ferrite tiles, and regarding airgap distribution between ferrite tiles to reduce loss-inducing circulating flux within the ferrite structure without reducing coupling. Power transfer was simulated in ANSYS and PLECS under misaligned conditions, and validated experimentally with 93.7% system efficiency. Thermal tests performed under rated volt-amps found the magnetics temperatures (after 30 minutes) could be reduced from 168 to 67 °C using an improved magnetic layout that reduced the thermal gradients within the ferrite tiles by 70%. Leakage fluxes were targeted and validated to be below 15 μT, 950 mm from the center of the vehicle under rated power and worst-case misaligned conditions.
DOI: 10.21227/ejpw-mb86
title: Water Consumption Dataset of Smart City Users

description: The dataset originally was taken from DAIAD, which has the mechanism to monitor the water consumption in real time using a validated platform for different cities. These datasets had the record of different water consumption values taken from the smart water meters that indicates, total water consumption by different users in Litres with the time interval of one hour for a year.Out of which we have selected 50 random user's records here by the process of data cleaning, where this data would hold total water consumption by users on daily basis for a year acting as our training dataset. While choosing the dataset we have kept in mind regarding the water usage that has different criterions like water usage for the day-to-day activities, weekend’s and in different seasons, especially during the summer and winter from an individual perspective on a smart city.With all these factors taken into consideration one could carry out any experiment on these datasets by following suitable pre-processing and analysis methods to get accurate results.
DOI: 10.6084/m9.figshare.14260541
title: Dataset of article: "Changes in sedentary behavior patterns during the transition from childhood to adolescence and its association with adiposity: A prospective study based on compositional data analysis"

description: The manuscript has been published in the Archives of Public Health journal.<br>
DOI: 10.21227/2748-mn25
title: Parametric Relationship between Resonant Frequency and Structure Parameters of Normal Mode Helix Dipole Antenna for UHF RFID Tag Thread

description: