cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4632231
title: NJR-1 Dataset

description: NJR is a Normalized Java Resource. The <em>NJR-1</em> dataset consists of 293 Java bytecode programs, each of which runs successfully with the following 12 Java static analysis tools: 1. SpotBugs (https://spotbugs.github.io)<br> 2. Wala (https://wala.github.io)<br> 3. Doop (https://bitbucket.org/yanniss/doop)<br> 4. Soot (https://github.com/soot-oss/soot)<br> 5. Petablox (https://github.com/petablox/petablox)<br> 6. Infer (https://fbinfer.com)<br> 7. Error-Prone (http://errorprone.info)<br> 8. Checker-Framework (https://checkerframework.org)<br> 9. Opium (Opal-framework) (https://www.opal-project.de)<br> 10. Spoon (https://spoon.gforge.inria.fr)<br> 11. PMD (https://pmd.github.io)<br> 12. CheckStyle (https://checkstyle.org) Additionally, each program executes at least 100 unique application methods at runtime. These programs are repositories picked from the set of Java-8 projects on Github that compile and run successfully. Each of these programs come with a jar file, the compiled bytecode files, compiled library files and the Java source code. It also comes with a list of source files, declared methods, application-classes list, and main-class names. The availability of the files in both jar-file form, as well as source code form (with the compiled library classes) is a major reason the dataset works with so many tools, without requiring any extra effort. There are 3 files available for download: <em>njr-1_dataset.zip, scripts.zip, benchmark_stats.csv.</em> <em>njr-1_dataset.zip</em> has the actual dataset programs. <em>scripts.zip</em> contains Python3 scripts for each tool, to run it on the entire dataset. The <em>benchmark_stats.csv</em> file lists, for each benchmark, the number of nodes and edges in its dynamic application call-graph, as well as the number of edges in its static application call-graph (as computed by Wala) when using the main function listed in the <em>info/mainclassname</em> file. <br> A summary of the same is listed here: <strong><em>Statistics Dynamic-Nodes Dynamic-Edges Static-Edges</em></strong><br> Mean 205 469 1404<br> St.Dev 199 464 2523<br> Median 149 327 610 To cite the dataset, please cite the following paper:<br> Jens Palsberg and Cristina V. Lopes, NJR: a Normalized Java Resource. <br> In Proceedings of ACM SIGPLAN International Workshop on State Of the Art in Program Analysis (SOAP), 2018.
description: Funded by the following NSF grant (https://www.nsf.gov/awardsearch/showAward?AWD_ID=1823360&HistoricalAwards=false)
DOI: 10.5281/zenodo.4839913
title: NJR-1 Dataset

description: NJR is a Normalized Java Resource. The <em>NJR-1</em> dataset consists of 293 Java bytecode programs, each of which runs successfully with the following 12 Java static analysis tools: 1. SpotBugs (https://spotbugs.github.io)<br> 2. Wala (https://wala.github.io)<br> 3. Doop (https://bitbucket.org/yanniss/doop)<br> 4. Soot (https://github.com/soot-oss/soot)<br> 5. Petablox (https://github.com/petablox/petablox)<br> 6. Infer (https://fbinfer.com)<br> 7. Error-Prone (http://errorprone.info)<br> 8. Checker-Framework (https://checkerframework.org)<br> 9. Opium (Opal-framework) (https://www.opal-project.de)<br> 10. Spoon (https://spoon.gforge.inria.fr)<br> 11. PMD (https://pmd.github.io)<br> 12. CheckStyle (https://checkstyle.org) Additionally, each program executes at least 100 unique application methods at runtime. These programs are repositories picked from the set of Java-8 projects on Github that compile and run successfully. Each of these programs come with a jar file, the compiled bytecode files, compiled library files and the Java source code. It also comes with a list of source files, declared methods, application-classes list, and main-class names. The availability of the files in both jar-file form, as well as source code form (with the compiled library classes) is a major reason the dataset works with so many tools, without requiring any extra effort. There are 3 files available for download: <em>njr-1_dataset.zip, scripts.zip, benchmark_stats.csv.</em> <em>njr-1_dataset.zip</em> has the actual dataset programs. <em>scripts.zip</em> contains Python3 scripts for each tool, to run it on the entire dataset. The <em>benchmark_stats.csv</em> file lists, for each benchmark, the number of nodes and edges in its dynamic application call-graph, as well as the number of edges in its static application call-graph (as computed by Wala) when using the main function listed in the <em>info/mainclassname</em> file. <br> A summary of the same is listed here: <strong><em>Statistics Dynamic-Nodes Dynamic-Edges Static-Edges</em></strong><br> Mean 205 469 1404<br> St.Dev 199 464 2523<br> Median 149 327 610 To cite the dataset, please cite the following paper:<br> Jens Palsberg and Cristina V. Lopes, NJR: a Normalized Java Resource. <br> In Proceedings of ACM SIGPLAN International Workshop on State Of the Art in Program Analysis (SOAP), 2018.
description: Funded by the following NSF grant (https://www.nsf.gov/awardsearch/showAward?AWD_ID=1823360&HistoricalAwards=false)
DOI: 10.5281/zenodo.8015483
title: Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics

description: Protein glycosylation — a complex and heterogeneous post-translational modification frequently dysregulated in disease — has been difficult to analyse at scale. Here we report a data-independent-acquisition technique for the large-scale mass-spectrometric quantification of glycopeptides in plasma samples. The technique, which we named ‘OxoScan-MS’, identifies oxonium ions as glycopeptide fragments and exploits a sliding-quadrupole dimension to generate comprehensive, untargeted oxonium ion maps of precursor masses assigned to fragment ions from non-enriched plasma samples. By applying OxoScan-MS to quantify 1,002 glycopeptide features in the plasma glycoproteomes from COVID-19 patients and healthy controls, we found that severe COVID-19 induces differential glycosylation in IgA, haptoglobin, transferrin and other disease-relevant plasma glycoproteins. OxoScan-MS may allow for the quantitative mapping of glycoproteomes at the scale of hundreds to thousands of samples.
description: Datasets and custom code (also found at https://github.com/ehwmatt/OxoScan-MS) associated with the described paper.
DOI: 10.5281/zenodo.8015482
title: Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics

description: Protein glycosylation — a complex and heterogeneous post-translational modification frequently dysregulated in disease — has been difficult to analyse at scale. Here we report a data-independent-acquisition technique for the large-scale mass-spectrometric quantification of glycopeptides in plasma samples. The technique, which we named ‘OxoScan-MS’, identifies oxonium ions as glycopeptide fragments and exploits a sliding-quadrupole dimension to generate comprehensive, untargeted oxonium ion maps of precursor masses assigned to fragment ions from non-enriched plasma samples. By applying OxoScan-MS to quantify 1,002 glycopeptide features in the plasma glycoproteomes from COVID-19 patients and healthy controls, we found that severe COVID-19 induces differential glycosylation in IgA, haptoglobin, transferrin and other disease-relevant plasma glycoproteins. OxoScan-MS may allow for the quantitative mapping of glycoproteomes at the scale of hundreds to thousands of samples.
description: Datasets and custom code (also found at https://github.com/ehwmatt/OxoScan-MS) associated with the described paper.
DOI: 10.5281/zenodo.5519236
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5519501
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5728272
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5748396
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5750211
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5519235
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5750826
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.5759412
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.6415067
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.5281/zenodo.8015496
title: Datasets for Shambhala harmonization

description: Datasets for Shambhala harmonization.
DOI: 10.15468/dl.3aqvvg
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solanum humectophilum Ochoa"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0355528-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56171
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.jxfgs3
title: Occurrence Download

description: A dataset containing 14693 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus Gray, 1842"
 ]
}

 The dataset includes 14693 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041008-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aujxkd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Clinostomus elongatus (Kirtland, 1840)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002108-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ps94at
title: Occurrence Download

description: A dataset containing 311149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sonchus oleraceus L."
 ]
}

 The dataset includes 311149 records from 1359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092266-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qb4pz
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Androstachys johnsonii Prain"
 ]
}

 The dataset includes 204 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006942-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ecu57
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.08832940080732 21.904587851700114,123.08832940080732 21.904587851700114,123.08832940080732 25.904587851700114,119.08832940080732 25.904587851700114,119.08832940080732 21.904587851700114))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco amurensis Radde, 1863"
 ]
}

 The dataset includes 134 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252264-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rqgax
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tolypeutes tricinctus (Linnaeus, 1758)"
 ]
}

 The dataset includes 33 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010808-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.968y3a
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron leptorhizon DC."
 ]
}

 The dataset includes 116 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157931-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knnmrw
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Discocarpus gentryi S.M.Hayden"
 ]
}

 The dataset includes 53 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157930-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwme9g
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amorphophallus goetzei (Engl.) N.E.Br."
 ]
}

 The dataset includes 20 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006960-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fbe5p
title: Occurrence Download

description: A dataset containing 4253 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bucorvus abyssinicus (Boddaert, 1783)"
 ]
}

 The dataset includes 4253 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400201-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ji1bvv
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 524 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010058-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usmjig
title: Occurrence Download

description: A dataset containing 39225991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Insecta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39225991 records from 2024 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010058-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjdbd6
title: Occurrence Download

description: A dataset containing 17718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aratinga nenday"
 ]
}

 The dataset includes 17718 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014899-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42kfkp
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rubus tsangiorum Hand.-Mazz."
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138584-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wodkzg
title: Occurrence Download

description: A dataset containing 21405151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 21405151 records from 779 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004345-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9mxvk
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Ecuador",
 "Country is Colombia",
 "Country is Peru",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
 },
 "Geometry POLYGON((-180 -6,180 -6,180 11,-180 11,-180 -6))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Achyrocline lehmannii Hieron.",
 "TaxonKey is Aa maderoi Schltr."
 ]
 }
 ]
}

 The dataset includes 162 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008102-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xmxej
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-98.5 18.83,-97.33 18.83,-97.33 20.67,-98.5 20.67,-98.5 18.83))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pittocaulon velatum (Greenm.) H.Rob. & Brettell"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198373-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lcps5f
title: Occurrence Download

description: A dataset containing 1509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Felidae",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1509 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004346-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nttzu6
title: Occurrence Download

description: A dataset containing 22440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Continent is North America",
 "TaxonKey is Asimina triloba (L.) Dunal"
 ]
}

 The dataset includes 22440 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025613-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt2rg3
title: Occurrence Download

description: A dataset containing 979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panthera leo (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 979 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004346-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9z72yj
title: Occurrence Download

description: A dataset containing 27678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Antarctica",
 "OccurrenceStatus is Present",
 "TaxonKey is Cnidaria"
 ]
}

 The dataset includes 27678 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017696-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew6wux
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((58.64181 -17.28427,139.35819 -17.28427,139.35819 39.28427,58.64181 39.28427,58.64181 -17.28427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dillenia pentagyna Roxb."
 ]
}

 The dataset includes 157 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047653-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlbj2k
title: Occurrence Download

description: A dataset containing 1598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sceloporus siniferus Cope, 1870",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1598 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004346-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an7wyo
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Homo heidelbergensis Schoetensack, 1908"
 ]
}

 The dataset includes 44 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007439-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5brv9w
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (214172038, Corcyra, Corcyra, Corcyra, Corcyra, Corcyra, Corcyra, 215904933, Corcyra, Corcyra, Corcyra, Corcyra, Corcyra, 157895975, Corcyra, Corcyra, Corcyra, Corcyra, Corcyra, Corcyra Ragonot, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, 161483074, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Corcyra Dejean, 1821, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Corcyra Ragonot, 1885, Catasticta Butler, 1870, Adelpha Hübner, 1819)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1960"
 ]
}

 The dataset includes 26 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032014-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.