cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35077/add-hut
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 770249617

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 770249617', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'770249617', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'770249617', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.17909/jmva-dc49
title: Data from paper
DOI: 10.35077/add-ice
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 767801031

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 767801031', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'767801031', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'767801031', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-ill
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 766791643

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 766791643', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'766791643', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'766791643', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.3761562.v2568
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5519/qd.33og547b
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.21972278
title: cpn60-Classifier v10.1 (Performance testing)

description: cpn60-Classifier v10.1 (For additional information and releases, visit HillLab on github) <br> This is the version of the RDP Classifier trained on 11,001 reference cpn60 sequences used for performance testing. Duplicate sequences were removed from the reference database using the <em>rm-dupseq</em> function of the RDP classifier since these can inflate results during classification performance testing. <br> (An updated release containing additional sequences has been made available since this original investigation) <br> The release contains <strong>training files</strong> (taxonomy table and FASTA formatted sequences) as well as the <strong>trained classifier </strong>for use with RDP Classifier. <br> <strong>RDPTools</strong> includes the classifier and can be installed with conda https://anaconda.org/bioconda/rdptools (Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–7). Quick start with the trained classifier Download cpn60-Classifier_v10_trained.tar.gz and unpack it. The resulting directory should include: bergeyTrainingTree.xml genus_wordConditionalProbList.txt logWordPrior.txt rRNAClassifier.properties wordConditionalProbIndexArr.txt A basic command to classify cpn60 sequences contained in a file called queries.fasta: <br> <code>java -jar /path/to/RDPTools/classifier.jar classify -c 0.9 -f allrank -t /path/to/cpn60-Classifier_v10_trained/rRNAClassifier.properties -o output.txt queries.fasta</code> <br> See the README here for more details on the RDP Classifier: https://github.com/rdpstaff/classifier To train the Classifier Download cpn60-Classifier_v10_training.tar.gz and unpack it. The resulting directory should include: refseqs_v10.fasta taxonomytable_v10.txt Other scripts needed (from https://github.com/GLBRC-TeamMicrobiome/python_scripts with minor edit to addFullLineage.py to fix error): addFullLineage-jh.py lineage2taxTrain.py (If you want to generate your own taxonomy file, see https://pypi.org/project/taxonomy-ranks/) <br> Make ready-to-train taxonomy: <br> <code>/path/to/lineage2taxTrain.py taxonomytable_v10.txt &gt; ready2train_taxonomy.txt</code> <br> Add lineages to fasta sequence definition lines: <br> <code>/path/to/addFullLineage-jh.py taxonomytable_v10.txt resets_v10.fasta &gt; ready2train_refseqs.fasta</code> <br> Now train: <br> <code>java -jar /path/to/RDPTools/classifier.jar train -o training_files -s read2train_refseqs.fasta -t ready2train_taxonomy.txt</code> <br> The resulting directory contains the trained classifier EXCEPT for one important thing, which is the rRNAClassifier.properties file, which you can add manually.
DOI: 10.35077/add-ink
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 766789211

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 766789211', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'766789211', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'766789211', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-irk
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 758996755

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 758996755', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'758996755', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'758996755', Locations:'TemL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.21564435
title: Development of the Mental Healthcare Intensity Scale

description: Date for the development of the Mental Healthcare Intensity Scale
DOI: 10.35077/add-jab
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 751208741

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 751208741', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'751208741', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'751208741', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jam
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737792547

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737792547', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'737792547', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'737792547', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jar
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737553506

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737553506', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'737553506', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'737553506', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jaw
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737549021

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737549021', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'737549021', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'737549021', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jet
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737159000

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 737159000', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'737159000', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'737159000', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jig
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 732127116

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 732127116', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'732127116', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'732127116', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-job
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 732105067

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 732105067', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'732105067', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'732105067', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-jog
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 720885760

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 720885760', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'720885760', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'720885760', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.5281/zenodo.7869220
title: Non-Abelian braiding of graph vertices in a superconducting processor

description: Data for the manuscript https://arxiv.org/abs/2210.10255
DOI: 10.5281/zenodo.7869219
title: Non-Abelian braiding of graph vertices in a superconducting processor

description: Data for the manuscript https://arxiv.org/abs/2210.10255