cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10210109
title: Database of measurements for damage detection of steel beam splice connections by Coaxial Correlation Method in 6-D space

description: This database includes series of measurements of the structure's response taken in six-dimensional space using two 6D sensors, coaxially positioned on either side of the investigated splice connection between two steel beams. The data set consists of measurements for six different specimens with two types of impact – sweep signal with duration 0.5 s and short impulse, during degradation of the splice connections realised by unbolting the bolts in the connections. In the "Read_me_first.pdf" is described the experiment, the format of .csv files names and files' structure.
This database is a continuation of the database Kurtenoks, V., Buka-Vaivade, K., Serdjuks, D., Lapkovskis, V., Mironovs, V., & Podkoritovs, A. (2023). Database of measurements for damage detection of steel beam splice connection by Coaxial Correlation Method in 6-D space (1.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10077332Suggested by authors data post-processing is described in Buka-Vaivade, K.; Kurtenoks, V.; Serdjuks, D. Non-Destructive Damage Detection of Structural Joint by Coaxial Correlation Method in 6D Space. Buildings 2023, 13, 1151. https://doi.org/10.3390/buildings13051151
DOI: 10.18419/darus-3556/1
title: align_signals.m

description: Help function to align two signals in the temporal domain.
DOI: 10.18419/darus-3556/2
title: compute_cosine_similarity.m

description: Matlab function to compute the cosine similarity between all motor unit responses given a libray of signals.
DOI: 10.18419/darus-3556/3
title: extension.m

description: Help function to perform the signal extension.
DOI: 10.18419/darus-3556/4
title: in_silico_decomposition.m

description: Matlab function to perform an in-silico decomposition trial.
DOI: 10.18419/darus-3556/5
title: calculate_spike_train.m

description: Matlab scrip to compute the motor unit spike trains as described in the manuscript.
DOI: 10.18419/darus-3556/6
title: generate_mu_distributions.m

description: Matlab script to compute motor unit territories as described in the manuscript.
DOI: 10.18419/darus-3556/7
title: decomposition_results.mat

description: Summary of the motor unit in-silico trials.
DOI: 10.18419/darus-3556/8
title: Make_Figure_7.m

description: Matlab script to reproduce Figure 7 from the manuscript.
DOI: 10.18419/darus-3556/9
title: muscle_1_f0mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/10
title: muscle_2_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/11
title: muscle_4_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/12
title: muscle_1_f20mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/13
title: muscle_3_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/14
title: muscle_4_f20mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/15
title: muscle_3_f20mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/16
title: muscle_3_f0mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/17
title: muscle_2_f20mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/18
title: muscle_4_f0mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/19
title: muscle_5_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/20
title: muscle_5_f0mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/21
title: muscle_2_f0mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/22
title: muscle_5_f20mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/23
title: muscle_1_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points).
DOI: 10.18419/darus-3556/24
title: muscle_1_f0mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/25
title: muscle_1_f0mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/26
title: muscle_1_f0mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/27
title: muscle_2_f0mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/28
title: muscle_2_f0mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/29
title: muscle_2_f5mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/30
title: muscle_1_f5mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/31
title: muscle_2_f5mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/32
title: muscle_1_f5mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/33
title: muscle_2_f5mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/34
title: muscle_1_f5mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/35
title: muscle_1_f20mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/36
title: muscle_2_f20mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/37
title: muscle_2_f20mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/38
title: muscle_2_f20mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/39
title: muscle_1_f20mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/40
title: muscle_1_f20mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/41
title: muscle_4_f0mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/42
title: muscle_5_f20mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/43
title: muscle_3_f5mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/44
title: muscle_5_f0mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/45
title: muscle_5_f0mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/46
title: muscle_5_f0mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/47
title: muscle_3_f0mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.6084/m9.figshare.24611829
title: Utilizing 16S sequencing for the detection of the intestinal microbiota in diabetic nephropathy rats.

description: Using 16S sequencing technology, we conducted sequencing on the intestinal microbiota of a diabetic nephropathy rat model, identifying key differential microbial communities
DOI: 10.6084/m9.figshare.24611829.v1
title: Utilizing 16S sequencing for the detection of the intestinal microbiota in diabetic nephropathy rats.

description: Using 16S sequencing technology, we conducted sequencing on the intestinal microbiota of a diabetic nephropathy rat model, identifying key differential microbial communities
DOI: 10.18419/darus-3556/48
title: muscle_4_f5mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/49
title: muscle_3_f20mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/50
title: muscle_4_f20mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/51
title: muscle_4_f5mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/52
title: muscle_3_f0mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/53
title: muscle_3_f5mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/54
title: muscle_4_f20mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/55
title: muscle_3_f20mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/56
title: muscle_5_f5mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/57
title: muscle_5_f20mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/58
title: muscle_3_f0mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/59
title: muscle_5_f5mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/60
title: muscle_4_f5mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/61
title: muscle_4_f20mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/62
title: muscle_5_f5mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/63
title: muscle_5_f20mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/64
title: muscle_4_f0mm_high_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/65
title: muscle_3_f20mm_medium_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/66
title: muscle_3_f5mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/67
title: muscle_4_f0mm_low_mvc.mat

description: Simulated high-density EMG and high-density MMG singal for a 30 second long voluntary isometric contraction.
DOI: 10.18419/darus-3556/68
title: extended_output_muscle_2_f5mm.mat

description: Full output of the motor unit decomposition for one in-silico experiments (required to replicate Figure 6).
DOI: 10.18419/darus-3556/69
title: muscle_3.mat

description: Motor unit territories for the simulated motor unit pools (Dim 1: y-coordinate, Dim 2: z-coordinate, Dim 3: Motor unit index).
DOI: 10.18419/darus-3556/70
title: compute_interference_signal.m

description: Matlab script to compute the EMG/MMG interference signal, given a motor unit response library and an input spike train.
DOI: 10.18419/darus-3556/71
title: muscle_4.mat

description: Motor unit territories for the simulated motor unit pools (Dim 1: y-coordinate, Dim 2: z-coordinate, Dim 3: Motor unit index).
DOI: 10.18419/darus-3556/72
title: muscle_5.mat

description: Motor unit territories for the simulated motor unit pools (Dim 1: y-coordinate, Dim 2: z-coordinate, Dim 3: Motor unit index).
DOI: 10.18419/darus-3556/73
title: muscle_2.mat

description: Motor unit territories for the simulated motor unit pools (Dim 1: y-coordinate, Dim 2: z-coordinate, Dim 3: Motor unit index).
DOI: 10.18419/darus-3556/74
title: muscle_1.mat

description: Motor unit territories for the simulated motor unit pools (Dim 1: y-coordinate, Dim 2: z-coordinate, Dim 3: Motor unit index).
DOI: 10.18419/darus-3556/75
title: spiketrains_high_mvc.mat

description: Binary spike train that is used as input for generating interference signals (Dim 1: Motor unit index, Dim 2: Time Sample).
DOI: 10.18419/darus-3556/76
title: spiketrains_medium_mvc.mat

description: Binary spike train that is used as input for generating interference signals (Dim 1: Motor unit index, Dim 2: Time Sample).
DOI: 10.18419/darus-3556/77
title: spiketrains_low_mvc.mat

description: Binary spike train that is used as input for generating interference signals (Dim 1: Motor unit index, Dim 2: Time Sample).
DOI: 10.18419/darus-3556/78
title: Make_Figure_6.m

description: Matlab script to reproduce Figure 6 from the manuscript.
DOI: 10.18419/darus-3556/79
title: Make_Figure_3.m

description: Matlab script to reproduce Figure 3 from the manuscript.
DOI: 10.18419/darus-3556/80
title: Make_Figure_8.m

description: Matlab script to reproduce Figure 8 from the manuscript.
DOI: 10.18419/darus-3556/81
title: Make_Figure_5.m

description: Matlab script to reproduce Figure 5 from the manuscript.
DOI: 10.18419/darus-3556/82
title: Make_Figure_4.m

description: Matlab script to reproduce Figure 4 from the manuscript.
DOI: 10.18419/darus-3556/83
title: Make_Figure_9.m

description: Matlab script to reproduce Figure 9 from the manuscript.
DOI: 10.18419/darus-3556/84
title: in_silico_trials.m

description: Matlab script that performs the motor unit decomposition in-silico trials as described in the manuscript.
DOI: 10.18419/darus-3556/85
title: simulate_motor_unit_response_library.m

description: Input file to simulate the motor unit response libraries with the multi-domain simulation framework. Executing this script requires to download a freely available software package: https://bitbucket.org/klotz_t/multi_domain_fd_code/
DOI: 10.18419/darus-3556/86
title: Make_Figure_2.m

description: Matlab script to reproduce Figure 2 from the manuscript.
DOI: 10.18419/darus-3556/87
title: muscle_basic_properties_f5mm.mat

description: Simulated motor unit electric potentials (MUEPs) and motor unit magnetic fields (MUMFs) measured from a virtual high-density EMG or MMG array (70 sampling points). Specifically, this data shocases the influecne of the MU depth. All MU territories are identical, however, shifted in depth.
DOI: 10.5281/zenodo.7609523
title: Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean

description: This archive contains bioinformatic code and data files to reproduce bacterial analyses from Gros et al. (Biogeosciences; https://doi.org/10.5194/bg-2022-150). In this study, seawater samples collected along an Atlantic-Arctic transect (55-80°N) were evaluated for microbial community composition and trace gas concentrations. Microbes were sampled underway using "AUTOFIM" automatic filtration; and bacterial communities amplicon-sequenced using 16S rRNA gene primers. Raw sequence data is available at ENA under BioProject PRJEB50492.


The archive contains:
  - Rmarkdown for primer-clipping, ASV generation and taxonomy assignment: 1_DADA.Rmd
  - Rscript for ASV and metadata processing; alpha-diversity calculations: 2_DataLoad.R
  - Rscript for generation of manuscript figures: 3_Results.R
  - Rscript for generation of supplementary figures: 4_Supplement.R
  - Metadata and environmental parameters as .txt files
DOI: 10.25345/c5tx35h63
title: MassIVE MSV000093508 - Novel roles of USP14 in the regulation of oxidative stress, mitochondria shape and the CLEAR gene network as evident from gene deletion
title: The deubiquitinating enzyme USP14 (Ubiquitin Specific Protease 14) is a major player in the control of protein homeostasis by influencing protein ubiquitination and activity of the 26S Proteasome. Here we have investigated pathways affected by USP14 utilizing an SH-SY5Y neuroblastoma cell model with gene deletion of the protein. USP14 deleted cells have a defect in the 26S proteasomal complex. Global proteome profiling of USP14 deleted cells identify changes in proteins related to the 26S proteasome network and other key cell signaling pathways. Importantly, transcription factor EB (TFEB), involved in regulation of autophagy-lysosomal pathways and CLEAR (Coordinated Lysosomal Expression and Regulation) signaling network were upregulated in these cells. Immunoblotting for LC3B and GABARAP along with electron microscopy (EM) confirmed an increase in autophagy in USP14 ablated cells. Phospho-proteomic analyses revealed that USP14 is phosphorylated at several residues while USP14 phosphorylated at Serine 143 (S143) was associated with enriched mitochondria. Reconstituting USP14 deleted cells with the phospho-mimetic mutant S143D-USP14 and wild-type USP14 reduces oxidative stress, whilst the mutant S143A-USP14 had no effect. The level of mitochondria-associated pS143-USP14 was also found to be reduced by induction of oxidative stress indicating a protective role of this USP14 phosphorylation. Together these data reveal novel roles of USP14 in regulating mitochondria, oxidative stress as well as in autophagy via TFEB. We also identify phosphorylation of USP14 as a key event for its functions at the mitochondria and regulating oxidative stress. The mechanisms involved and the physiological role of USP14 phosphorylation warrant further investigations using different cell types and disease models.
DOI: 10.25824/redu/wcnyxl
title: 1 - PRISMA Flow Diagram.jpeg

description: PRISMA flow diagram of the systematic literature review
DOI: 10.25824/redu/tuv06x
title: 2 - Search for papers.7z

description: Metadata files obtained from searching through the selected digital libraries, processed and filtered the results.
DOI: 10.25824/redu/7h8yas
title: 3 - Selection of papers.7z

description: Spreadsheet of the selected studies
DOI: 10.25824/redu/j3xwdk
title: 4 - Form Mapping.pdf

description: Google Form to extract data from selected studies related to evaluation
DOI: 10.25824/redu/brwltg
title: 5 - Analysis and results.7z

description: Analysis and results of data collected with the Google form
DOI: 10.25824/redu/gbyg9x
title: Data from a systematic literature review on evaluation of interactive installations

description: This dataset contains information extracted from the Systematic Literature Review (SRL) on Evaluation of Interactive Installations. This SRL aims to map the terrain to aspects that are being evaluated within scenarios of ubiquitous and pervasive technology constituted by interactive installations, evaluation methods which are applied, who is the target audience, and whether the evaluation methods are taking into account the new types of (social) actions and perceptions afforded by interactive installations. This dataset is part of the Socioenactive Systems FAPESP Thematic Project# 2015/16528-0. The Socioenactive Systems Project is approved by the Unicamp Ethical Committee under the number CAAE 72413817.3. 0000.5404.
DOI: 10.6084/m9.figshare.24638607
title: Raw data of the study

description: Raw data of TaqMan Low-Density Array (TLDA) and Sanger sequencing plus clinical information of participants.
DOI: 10.25345/c5q52fq1s
title: MassIVE MSV000093509 - Ttttttttttttttttttttttttttttttttttttttteszt45
title: shavuivsouvaoushsabjasbvdauvgauogsacbsdjacbasudzvgaousdhavcaszuvcu
DOI: 10.5517/ccdc.csd.cc29yymv
title: CCDC 2143948: Experimental Crystal Structure Determination

description: Related Article: Vageesha W. Liyana Gunawardana, Tyler J Finnegan, Carson E Ward, Curtis E. Moore, Jovica D. Badjic|2022|Angew.Chem.,Int.Ed.|61|e202207418|doi:10.1002/anie.202207418
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.