cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18374861
title: Sheep and goat pox: literature review on vaccine safety

description: This review summarizes findings from scientific papers regarding the safety of vaccines against sheep pox and related capripoxvirus infections. The data extracted include vaccine types, adverse reactions, pregnancy safety, virus shedding, and key safety conclusions. The search was performed on 26th November 2025 using the query " Are commercially available vaccines against sheep and goat pox safe in term of severity of adverse reactions, risk of virus shedding and compatibility with pregnancy of animals?" across over 138 million academic papers from the Elicit search engine, which includes all of Semantic Scholar and OpenAlex.
description: EU; pdf; biohaw@efsa.europa.eu
DOI: 10.5281/zenodo.18374862
title: Sheep and goat pox: literature review on vaccine safety

description: This review summarizes findings from scientific papers regarding the safety of vaccines against sheep pox and related capripoxvirus infections. The data extracted include vaccine types, adverse reactions, pregnancy safety, virus shedding, and key safety conclusions. The search was performed on 26th November 2025 using the query " Are commercially available vaccines against sheep and goat pox safe in term of severity of adverse reactions, risk of virus shedding and compatibility with pregnancy of animals?" across over 138 million academic papers from the Elicit search engine, which includes all of Semantic Scholar and OpenAlex.
description: EU; pdf; biohaw@efsa.europa.eu
DOI: 10.5061/dryad.ts80c92
title: Data from: Grazer effects on soil carbon storage vary by herbivore assemblage in a semi-arid grassland

description: 1. Accounting for 10-30% of global soil organic carbon, grassland soils
 potentially present a large reservoir for storing atmospheric CO2.
 Livestock grazing management can substantially affect grassland soil
 carbon (C) storage, but few controlled experiments have explored how
 herbivore assemblages (different herbivore species and combinations)
 affect soil C storage. 2. We examined effects of moderate grazing by
 different herbivore assemblages (no grazing; sheep grazing; cattle
 grazing; mixed grazing by sheep and cattle) on soil organic carbon storage
 in two types of grassland communities (high forbs/high diversity and low
 forbs/low diversity), within a semi-arid grassland with a five-year
 grazing history. 3. We found that herbivore assemblage generated varying
 effects on soil C storage and the effects were subject to grassland
 community types. In the low diversity community, none of three herbivore
 assemblages studied had obvious effects on soil C storage. In the high
 diversity community, however, sheep grazing significantly decreased soil C
 storage due to high selectivity for high quality forbs, and cattle grazing
 had no effects on soil C storage, while mixed grazing by sheep and cattle
 significantly increased soil C storage. Overall, soil C storage was
 highest in mixed-grazed grassland sites with high diversity. 4. Synthesis
 and applications. Our study suggests that explicitly incorporating grazer
 species and the combination of grazing livestock into grassland grazing
 management may help mitigate greenhouse gas emissions. Caution should be
 exercised when using grazer species with high food selectivity when
 grazing management is also aimed at climate mitigation, especially in
 grasslands with abundant high quality forbs and high plant diversity, as
 sheep grazing may reduce soil carbon (C) storage. Moreover, mixed grazing,
 including multiple herbivore species, may contribute to a reduction in
 foraging selectivity for a plant community by means of complementary
 foraging. It could therefore be considered as an optimal grazing
 management strategy to maintain and improve soil C storage.
description: Data for
 JAPPL-2017-01013.R1
DOI: 10.5061/dryad.7k300
title: Data from: Immanent conditions determine imminent collapses: nutrient regimes define the resilience of macroalgal communities

description: Predicting where state-changing thresholds lie can be inherently complex
 in ecosystems characterized by nonlinear dynamics. Unpacking the
 mechanisms underlying these transitions can help considerably reduce this
 unpredictability. We used empirical observations, field and laboratory
 experiments, and mathematical models to examine how differences in
 nutrient regimes mediate the capacity of macrophyte communities to sustain
 sea urchin grazing. In relatively nutrient-rich conditions, macrophyte
 systems were more resilient to grazing, shifting to barrens beyond 1 800 g
 m−2 (urchin biomass), more than twice the threshold of nutrient-poor
 conditions. The mechanisms driving these differences are linked to how
 nutrients mediate urchin foraging and algal growth: controlled experiments
 showed that low-nutrient regimes trigger compensatory feeding and reduce
 plant growth, mechanisms supported by our consumer–resource model. These
 mechanisms act together to halve macrophyte community resilience. Our
 study demonstrates that by mediating the underlying drivers, inherent
 conditions can strongly influence the buffer capacity of nonlinear
 systems.
description: Urchin and Algal cover
 surveyThis file contains
 information on macroalgal cover to urchin biomasses from field surveys in
 two regions in the Mediterranean. Region 1 (high nutrient regions) and
 region 2 (low nutrient region). This data was obtained from 50x50cm
 quadrats in several locations in each region.Algae_Urchin_2013
 (TRBase).txtCode RThis file contains the R
 code used to determine thresholds
DOI: 10.5061/dryad.116
title: Data from: Phylogenetic Congruence and Discordance Among One Morphological and Three Molecular Data Sets from Pontederiaceae

description: A morphological data set and three sources of data from the chloroplast
 genome (two genes and a restriction-site survey) were used to reconstruct
 the phylogenetic history of the Pickerelweed family Pontederiaceae. The
 chloroplast data are converging to a single tree, presumably the true
 chloroplast phylogeny of the family. Unrooted trees estimated from the
 three chloroplast data sets were identical or extremely similar in shape
 to each other, mostly robustly supported and there was no evidence of
 significant heterogeneity among them. The few topological differences seen
 among unrooted trees from each chloroplast data set are probably artifacts
 of sampling error on short branches. Despite well documented differences
 in rates of evolution for different characters in individual data sets,
 equally weighted parsimony therefore permits accurate reconstructions of
 chloroplast relationships in Pontederiaceae. A separate morphology-based
 data set yielded trees that were very different from the chloroplast
 trees. While there was substantial support by the morphological evidence
 for several major clades supported by chloroplast trees, most of the
 conflicting phylogenetic structure on the morphology trees was not robust.
 Nonetheless, several statistical tests of incongruence indicate
 significant heterogeneity between molecules and morphology. The source of
 this apparent incongruence appears to be a low ratio of phylogenetic
 signal to noise in the morphological data.
description: Graham et al Appendix
 1grahamapp1.htmlGraham et al Appendix 2grahamapp2.txt
DOI: 10.5061/dryad.3jm3s
title: Data from: From pristine forests to high-altitude pastures: an ecological approach to prehistoric human impact on vegetation and landscapes in the western Italian Alps

description: 1. This paper addresses the origin and development of the oldest
 prehistoric pasture in the timberline ecotone known so far in the Alps and
 its relation to anthropogenic pressure and natural climate change. 2.
 Paleoecological and geochemical techniques were applied on the Crotte
 Basse mire stratigraphy (2365 m asl, western Italy) to describe changes in
 vegetation composition, forest biomass, land use and fertilization between
 ca. 6400 - 1800 yrs cal BP. 3. Subalpine forests dominated by Pinus cembra
 occurred at very high-altitude up to ca. 5600 yrs cal BP, when a sharp
 contraction of woody vegetation took place. This major vegetation shift is
 matched by increasing charcoal input and markers of pastoral/grazing
 activities (pollen, dung spores, and forms of phosphorus) in the sediment
 sequence in this small basin. 4. Major phases of landscape change detected
 in our multiproxy record chronologically match intervals of cumulative
 probability density of 14C ages from nearby archaeological sites,
 suggesting that human activity was the factor leading to massive landscape
 change from the onset of the Copper Age (ca. 5600 yrs cal BP). The change
 may have been reinforced by climate variability in the period 5700 - 5300
 years cal BP. 5. Sensitivity of woody species to fires was statistically
 explored (Appendix S3 in Supporting Information), revealing negative
 reactions of Pinus cembra and Betula to frequent fire episodes and
 positive reactions of Alnus viridis and Juniperus. Fire episodes do not
 affect Larix dynamics. 6. Synthesis: Mt. Fallère provides some of the
 oldest and consistent evidence so far available in the Alps for major
 anthropogenic pressure at the upper forest limit. As far back as 5600 cal
 years BP, high-elevation forest ecosystems were permanently disrupted and
 the alpine pastures were created. Palaeoecological data enable a clear
 distinction between a random and sporadic use of the alpine space, typical
 for Mesolithic and Neolithic societies, and an organized seasonal
 exploitation of natural resources, starting from the Copper Age onwards.
 The chronological comparison of independent climate proxies,
 paleoecological information and pollen-based temperature reconstructions
 sheds light on the relationships between climate and humans since
 prehistoric times.
description: Pini et
 al_JEcol_2016_0491_R1_Dryad archived dataThis file contains %
 pollen and LOI data, P forms concentrations used for elaborations
 presented in the paper.
DOI: 10.5061/dryad.hc8qs61
title: Data from: Human traffic and habitat complexity are strong predictors for the distribution of a declining amphibian

description: Invasive species and habitat modification threaten California's
 native pond-breeding amphibians, including the federally threatened
 California Red-legged Frog (Rana draytonii). The relative contributions of
 invasive species, including the American Bullfrog (Lithobates
 catesbeianus), and of habitat changes to these declines are disputed. I
 conducted a field study over several years in central California to
 examine the presence/absence of these two species at 79 breeding ponds to
 determine the predictive role for occupancy of factors including
 vegetation, pond characteristics, and measures of human activity. I used a
 boosted regression tree approach to determine the relative value of each
 predictor variable. Increased measures of human activity, especially
 proximity to trails and roads, were the best predictors for the absence of
 California Red-legged Frogs and California Newts. Historical factors and
 habitat conditions were associated with the extent and spread of the
 American Bullfrog. The extent and complexity of aquatic macrophytes and
 pond surface area were good predictors for the presence of these and other
 amphibian species. Surprisingly, invasive species played a relatively
 small role in predicting pond occupancy by the native species. These
 findings can inform conservation and restoration efforts for California
 Red-legged Frogs, which apparently persist best in small vegetated ponds
 in areas of low human disturbance.
description: Anderson_PLOS_data
DOI: 10.5061/dryad.6p35f
title: Data from: Epidemic and endemic pathogen dynamics correspond to distinct host population microbiomes at a landscape scale

description: Infectious diseases have serious impacts on human and wildlife
 populations, but the effects of a disease can vary, even among individuals
 or populations of the same host species. Identifying the reasons for this
 variation is key to understanding disease dynamics and mitigating
 infectious disease impacts, but disentangling cause and correlation during
 natural outbreaks is extremely challenging. This study aims to understand
 associations between symbiotic bacterial communities and an infectious
 disease, and examines multiple host populations before or after pathogen
 invasion to infer likely causal links. The results show that symbiotic
 bacteria are linked to fundamentally different outcomes of pathogen
 infection: host–pathogen coexistence (endemic infection) or host
 population extirpation (epidemic infection). Diversity and composition of
 skin-associated bacteria differed between populations of the frog, Rana
 sierrae, that coexist with or were extirpated by the fungal pathogen,
 Batrachochytrium dendrobatidis (Bd). Data from multiple populations
 sampled before or after pathogen invasion were used to infer cause and
 effect in the relationship between the fungal pathogen and symbiotic
 bacteria. Among host populations, variation in the composition of the skin
 microbiome was most strongly predicted by pathogen infection severity,
 even in analyses where the outcome of infection did not vary. This result
 suggests that pathogen infection shapes variation in the skin microbiome
 across host populations that coexist with or are driven to extirpation by
 the pathogen. By contrast, microbiome richness was largely unaffected by
 pathogen infection intensity, but was strongly predicted by geographical
 region of the host population, indicating the importance of environmental
 or host genetic factors in shaping microbiome richness. Thus, while both
 richness and composition of the microbiome differed between endemic and
 epidemic host populations, the underlying causes are most likely
 different: pathogen infection appears to shape microbiome composition,
 while microbiome richness was less sensitive to pathogen-induced
 disturbance. Because higher richness was correlated with host persistence
 in the presence of Bd, and richness appeared relatively stable to Bd
 infection, microbiome richness may contribute to disease resistance,
 although the latter remains to be directly tested.
description: Barcodes and
 metadataSequencing barcodes and
 metadata. See Readme file for details.Dryad
 Jani_etal_2017_PRSB.csv
DOI: 10.5281/zenodo.18374786
title: Sheep and goat pox: literature review about vaccine effectiveness

description: Live attenuated, inactivated, and combination vaccines consistently reduce the impacts of sheep pox virus in sheep and goat populations. Studies report that live attenuated vaccines produce protection rates of 80–100% over periods ranging from several weeks to 52 months. For example, one study noted 100% protection in sheep using the RM-65 strain for 2.5 months, while another documented 100% protection lasting up to 52 months in goats vaccinated with the goat pox virus/Uttarkashi/1978 formulation. Inactivated vaccines, when administered at high doses, have yielded 100% protection for durations of up to 9 months and offer improved safety for more sensitive animals. Combined or bivalent vaccines also achieve complete protection in most trials. In contrast, unvaccinated controls have shown morbidity as high as 100% and mortality up to 72%. Reports further indicate that breed, age, and physiological factors influence vaccine effectiveness, with some exotic breeds showing less robust responses to live attenuated formulations.
description: EU; pdf; biohaw@efsa.europa.eu
DOI: 10.5061/dryad.dc8dp2j
title: Data from: Age-specific patterns of maternal investment in common gull egg yolk

description: While the general patterns of age-specific changes in reproductive success
 are quite well established in long-lived animals, we still do not know if
 allocation patterns of maternally-transmitted compounds are related to
 maternal age. We measured yolk testosterone, carotenoids and vitamins A
 and E levels in a population of known-aged common gulls (Larus canus) and
 found an age-specific pattern in yolk lutein and vitamin A concentrations.
 Middle-aged mothers allocated more of these substances to yolk compared to
 young and old mothers. These results can be explained through differences
 in age-specific foraging, absorption, or deposition patterns of
 carotenoids and vitamins into yolk. If these molecules play a role in
 antioxidant defense and immune modulation, our results suggest a possible
 physiological pathway behind the age-specific changes in reproductive
 success of long-lived birds in the wild.
description: Urvik et al_gull
 eggs_raw dataRaw data of age specific
 differences in common gull egg characteristics. Data collected from the
 field.
DOI: 10.5061/dryad.ct92j
title: Data from: Genetic diversity confers colony-level benefits due to individual immunity

description: Several costs and benefits arise as a consequence of eusociality and
 group-living. With increasing group size, spread of disease among
 nest-mates poses selective pressure on both individual immunity and
 group-level mechanisms of disease resistance (social immunity). Another
 factor known to influence colony-level expression of disease is
 intracolony genetic diversity, which in honeybees (Apis mellifera) is a
 direct function of the number of mates of the queen. Colonies headed by
 queens with higher mating numbers have less variable infections of
 decreased intensity, though the underlying mechanisms remain unclear. By
 pathogen-challenging larvae in vitro, we decoupled larval immune response
 from mechanisms of social immunity. Our results show that baseline
 immunity and degree of immune response do not vary with genetic diversity.
 However, intracolony variance in antimicrobial peptide production after
 pathogen challenge decreases with increasing genetic diversity. This
 reduction in variability of the larval immune response could drive the
 mitigation of disease observed in genetically diverse colonies.
description: abaecin_challengedabaecin_controlhymenopt_challengedhymenopt_controlhymenopt_variance
DOI: 10.5061/dryad.6q8d6
title: Data from: Rapid allopolyploid radiation of moonwort ferns (Botrychium ; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions

description: Polyploidy is a major speciation process in vascular plants, and is
 postulated to be particularly important in shaping the diversity of extant
 ferns. However, limitations in the availability of bi-parental markers for
 ferns have greatly limited phylogenetic investigation of polyploidy in
 this group. With a large number of allopolyploid species, the genus
 Botrychium is a classic example in ferns where recurrent polyploidy is
 postulated to have driven frequent speciation events. Here, we use PacBio
 sequencing and the PURC bioinformatics pipeline to capture all homeologous
 or allelic copies of four long (∼1kb) low-copy nuclear regions from a
 sample of 45 specimens (25 diploids and 20 polyploids) representing 37
 Botrychium taxa, and three outgroups. This sample includes most currently
 recognized Botrychium species in Europe and North America, and the
 majority of our specimens were genotyped with co-dominant nuclear
 allozymes to ensure species identification. We analyzed the sequence data
 using maximum likelihood (ML) and Bayesian inference (BI)
 concatenated-data (“gene tree”) approaches to explore the relationships
 among Botrychium species. Finally, we estimated divergence times among
 Botrychium lineages and inferred the multi-labeled polyploid species tree
 showing the origins of the polyploid taxa, and their relationships to each
 other and to their diploid progenitors. We found strong support for the
 monophyly of the major lineages within Botrychium and identified most of
 the parental donors of the polyploids; these results largely corroborate
 earlier morphological and allozyme-based investigations. Each polyploid
 had at least two distinct homeologs, indicating that all sampled
 polyploids are likely allopolyploids (rather than autopolyploids). Our
 divergence-time analyses revealed that these allopolyploid lineages
 originated recently—within the last two million years—and thus that the
 genus has undergone a recent radiation, correlated with multiple
 independent allopolyploidizations across the phylogeny. Also, we found
 strong parental biases in the formation of allopolyploids, with individual
 diploid species participating multiple times as either the maternal or
 paternal donor (but not both). Finally, we discuss the role of polyploidy
 in the evolutionary history of Botrychium and the interspecific
 reproductive barriers possibly involved in these parental biases.
description: Alignment_Nuclear_LociThe alignments of the four nuclear loci.
DOI: 10.15468/dl.bgyt35
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Inga barbata"
 ]
}

 The dataset includes 506 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008413-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uavjne
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Albuliformes, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((109.630957 19.966667,110.78571 19.966667,110.78571 21.783333,109.630957 21.783333,109.630957 19.966667))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008414-260129131611470/datasets/export for details.
DOI: 10.15468/dl.pjrp7x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gossypium hirsutum",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025545-250811113504898/datasets/export for details.
DOI: 10.60507/fk2/z7ncop/ythxdc
title: README.md
DOI: 10.60507/fk2/z7ncop/1erujq
title: language_emergence_review.ipynb
DOI: 10.60507/fk2/z7ncop/tvixo6
title: requirements.txt
DOI: 10.60507/fk2/z7ncop/0kvh2w
title: data.zip
DOI: 10.60507/fk2/z7ncop/3kzbll
title: TobiasJWieczorek_DATASET_Readme.txt