cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3629654_d1.v1
title: Additional file 2: of Network analysis of psoriasis reveals biological pathways and roles for coding and long non-coding RNAs

description: List of GO terms enriched for amongst differentially expressed genes. The full list of GO terms that are enriched for amongst the differentially expressed genes in (1) PPvNN and (2) PPvPT. Direction indicates whether genes enriching for a given GO term are overexpressed (up) or underexpressed (down). (XLS 336 kb)
DOI: 10.6084/m9.figshare.c.3629654_d3.v1
title: Additional file 5: of Network analysis of psoriasis reveals biological pathways and roles for coding and long non-coding RNAs

description: Hub genes of the blue module. List of the hub genes in the PPvNN blue module (GS â Ľ 10, MM â Ľ 0.8). (TXT 747 bytes)
DOI: 10.6084/m9.figshare.c.3629654_d4.v1
title: Additional file 1: of Network analysis of psoriasis reveals biological pathways and roles for coding and long non-coding RNAs

description: List of differentially expressed genes. The full list of genes that were differentially expressed (FDR â ¤ 0.05) in (1) PPvNN and (2) PPvPT. (XLS 709 kb)
DOI: 10.6084/m9.figshare.c.3629657_d1.v1
title: Additional file 1: of Diversity within the entomopathogenic fungal species Metarhizium flavoviride associated with agricultural crops in Denmark

description: Fragment scoring matrix (presence = 1, light green; absence = 0) of Amplified Fragment Length Polymorphism (AFLP) data. Only fragments positive in duplicate runs were scored as present. Results of analysis of AFLP data are presented in Fig. 3. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3629747_d2.v1
title: MOESM11 of Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L.

description: Additional file 11: Phenotype and genotype date from mapping population G33Â Ă Â G43
DOI: 10.6084/m9.figshare.c.3629720_d6.v1
title: Additional file 11: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Drug-specific effects (D) for all drugs tested for each gRNA. (XLSX 416 kb)
DOI: 10.6084/m9.figshare.c.3629729_d9.v1
title: Additional file 2: Table S2. of Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs

description: Genotypes for 104 SNPs and haplotypes in all breeds. (TXT 161 kb)
DOI: 10.6084/m9.figshare.c.3629729_d10.v1
title: Additional file 9: Table S9. of Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs

description: Genotypes for candidate SNP 27:19,093,355 from the Taqman assay. (TXT 27 kb)
DOI: 10.6084/m9.figshare.c.3629720_d7.v1
title: Additional file 9: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Sequence read information and raw counts from MiSeq data. (XLSX 3070 kb)
DOI: 10.6084/m9.figshare.c.3629747_d5.v1
title: MOESM3 of Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L.

description: Additional file 3: Table S14. Mapping of genes involved in seed oil biosynthesis onto the Jatropha curcas linkage map
DOI: 10.6084/m9.figshare.c.3629720_d8.v1
title: Additional file 8: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: The small molecule/gene combinations constituting the reference chemical-genetic interactions used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3629747_d6.v1
title: MOESM2 of Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L.

description: Additional file 2: TableÂ S2. Summary of genome sequence physically mapped onto the Jatropha curcas genetic map shown in Figure 1. Tables S3â  S13.Â Summary of GenBank contigs mapped onto Groups 1 to 11 of the Jatropha curcas linkage map
DOI: 10.6084/m9.figshare.c.3629858_d1.v1
title: Additional file 1: of Human leukocyte antigen class 1 genotype distribution and analysis in persons with active tuberculosis and household contacts from Central Uganda

description: Table S1. Distributional differences in baseline characteristics between active TB patients and household contacts in the study. Table comparing the baseline characteristics of active TB patients and household contacts in the study. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3629858_d2.v1
title: Additional file 2: of Human leukocyte antigen class 1 genotype distribution and analysis in persons with active tuberculosis and household contacts from Central Uganda

description: Table S2. Total allelic frequencies of the study subjects from Kawempe, Kampala. Table of the total allele frequencies for HLA-A, HLA-B and HLA-C alleles of both active TB patients and household contacts in the study. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3629861_d2.v1
title: Additional file 2: Table S1. of Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa

description: Expected product size obtained from Gramene and observed product size for the SSR markers used in this study. (XLS 170 kb)
DOI: 10.6084/m9.figshare.c.3629858_d3.v1
title: Additional file 3: of Human leukocyte antigen class 1 genotype distribution and analysis in persons with active tuberculosis and household contacts from Central Uganda

description: Table S3. Comparison of allelic frequencies between active TB patients and household contacts in the study. Table comparing the allele frequencies for HLA-A, HLA-B and HLA-C alleles between active TB patients and household contacts in the study. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3629861_d3.v1
title: Additional file 3: Table S2. of Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa

description: Allele matrix of 192 accessions x 61 SSRs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3629873_d2.v1
title: Additional file 2 of MVDA: a multi-view genomic data integration methodology

description: Each sheet refers to each dataset analysed, reporting the results of the single-view clustering patients. Clustering errors for each algorithm and each cut of feature are also reported. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3629885_d1.v1
title: MOESM3 of Modulation of the balance of fatty acid production and secretion is crucial for enhancement of growth and productivity of the engineered mutant of the cyanobacterium Synechococcus elongatus

description: Additional file 3: Table S3. Oligonucleotides used for semi-quantitative RT-PCR. Sequences are given from the 5â ˛ end to the 3â ˛ end.
DOI: 10.6084/m9.figshare.c.3629918_d13.v1
title: Additional file 13: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

description: Folder containing pymol session files showing APBS maps of the homology models. Colour coding is same as in Additional file 8. (ZIP 35165 kb)
DOI: 10.6084/m9.figshare.c.3630017_d2.v1
title: Additional file 1: of A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer

description: is a table listing well-documented mutated genes for breast cancer, prostate cancer and leukemia. (XLS 889 kb)
DOI: 10.5281/zenodo.14510531
title: Dataset of Size-driven phase evolution in ultrathin relaxor films

description: Dataset of Size-driven phase evolution in ultrathin relaxor films
DOI: 10.6084/m9.figshare.c.3630134_d1.v1
title: Additional file 1: of Metformin use and its effect on survival in diabetic patients with advanced non-small cell lung cancer

description: Dataset supporting the conclusion of this article. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3630155_d1.v1
title: Additional file 2: of Co-activator candidate interactions for orphan nuclear receptor NR2E1

description: Table S2. Densitometry analysis of western blot signal after pulling-down NR2E1 Wt and variants with GST-Atrophin-1. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3630155_d2.v1
title: Additional file 1: of Co-activator candidate interactions for orphan nuclear receptor NR2E1

description: Table S1. List of all peptides used in the MARCoNI array and their corresponding binding values to NR2E1 Wt and variants R274G and R276Q. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3630263_d1.v1
title: Additional file 1: of The origin of Î˛-strand bending in globular proteins

description: List of PDB codes. The file contains a list of all the PDB codes and protein names used in our study. (TXT 139 kb)
DOI: 10.6084/m9.figshare.c.3630278_d1.v1
title: Additional file 12: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: KEGG enrichment analysis of co-expression gene clusters. (XLS 50Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d2.v1
title: Additional file 6: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of drought responsive PbWRKY TFs that located in co-expression clusters. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d3.v1
title: Additional file 10: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: GO enrichment analysis of co-expression gene clusters. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3630281_d1.v1
title: Additional file 1: of Epidemiology of burns in pediatric patients of Beijing City

description: Raw data of epidemiology in pediatric burned patients of Beijing City. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3630284_d1.v1
title: Additional file 2: of PPREMO: a prospective cohort study of preterm infant brain structure and function to predict neurodevelopmental outcome

description: Parameters of the proposed imaging sequences. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3630278_d4.v1
title: Additional file 1: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of PbWRKY genes. (XLS 1392Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d14.v1
title: Additional file 11: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by AA family. (XLS 15Â kb)
DOI: 10.6084/m9.figshare.c.3630344_d9.v1
title: Additional file 1: Table S1. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

description: Information regarding newly sequenced strains analyzed in this study. Additional information regarding newly sequenced strains. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3630326_d15.v1
title: Additional file 1: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Multiple sequence alignment of NRPS genes. (ZIP 225Â kb)
DOI: 10.6084/m9.figshare.c.3630380_d1.v1
title: Additional file 2 of Conservation of immune gene signatures in solid tumors and prognostic implications

description: Consensus clustering summary of SOM algorithm. This Excel file contains summary of the SOM consensus clustering results as produced by ConsensusClustering GenePattern module [26, 27]. Each cancer dataset (breast, colon, lung ovarian and prostate) has two tabs. One tab displays images of the summary statistics. The other tab lists the number of clusters selected for our analysis and contains Affy ID, gene symbol and title. (XLSX 5007 kb)
DOI: 10.6084/m9.figshare.c.3630380_d2.v1
title: Additional file 1 of Conservation of immune gene signatures in solid tumors and prognostic implications

description: Consensus clustering summary of k-means algorithm. This Excel file contains summary of the k-means consensus clustering results as produced by clusterCons R package [12, 28]. Each cancer dataset (breast, colon, lung ovarian and prostate) has two tabs. One tab displays images of the summary statistics. The other tab lists the number of clusters selected for our analysis and contains Affy ID, gene symbol and title together with membership robustness. (XLSX 2170 kb)
DOI: 10.5519/qd.m2pdjfgp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (131 records)
DOI: 10.6084/m9.figshare.c.3630380_d3.v1
title: Additional file 3 of Conservation of immune gene signatures in solid tumors and prognostic implications

description: Combined meta-intersections between two algorithms SOM and k-means. This Excel file contains final 23 meta-intersections as described in Results section. Each intersection is in separate tab, which also contains gene-annotation enrichment analysis results. (XLSX 721 kb)
DOI: 10.6084/m9.figshare.c.3630509_d3.v1
title: Additional file 8: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: COG analysis of core proteins. (XLSX 224 kb)
DOI: 10.6084/m9.figshare.c.3630527_d1.v1
title: Additional file 1: of Does the Low-level occupational exposure to volatile organic compounds alter the seasonal variation of selected markers of oxidative stress? A case–control study in nail technicians

description: Dataset. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3630509_d4.v1
title: Additional file 5: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: PsortB sub-cellular localization of core proteins. (XLSX 480 kb)
DOI: 10.6084/m9.figshare.c.3630509_d5.v1
title: Additional file 2: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Core proteins: Fasta sequences of 2445 core proteins are mentioned. (XLSX 550 kb)
DOI: 10.6084/m9.figshare.c.3630524_d2.v1
title: Additional file 15: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of PtLecRLK genes expressed specifically in roots. RNA-seq data were collected from the Populus Gene Atlas Study in Phytozome v11.0 ( http://phytozome.jgi.doe.gov/pz/portal.html ). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3630533_d1.v1
title: Additional file 2: Table S2. of Dissemination of clonal complex 2 Acinetobacter baumannii strains co-producing carbapenemases and 16S rRNA methylase ArmA in Vietnam

description: MLST analysis on PubMLST scheme in 93 A. baumannii isolates. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630509_d6.v1
title: Additional file 4: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Lists of core, essential, virulent and non-host homologs proteins: Parameters of essentiality, virulent, non host homologs and sub-cellular localization were summed up from the core proteins and 13 core proteins have been found out be potential vaccine targets. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3630524_d3.v1
title: Additional file 17: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of PtLecRLK genes expressed in the female and male reproductive tissues/organs. RNA-seq data were collected from the Populus Gene Atlas Study in Phytozome v11.0 ( http://phytozome.jgi.doe.gov/pz/portal.html ). (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3630533_d2.v1
title: Additional file 1: Table S1. of Dissemination of clonal complex 2 Acinetobacter baumannii strains co-producing carbapenemases and 16S rRNA methylase ArmA in Vietnam

description: Assembly summary report of 93 A. baumannii isolates using CLC Genomics Workbench version 5.5. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3630542_d2.v1
title: MOESM3 of Identification of brain-enriched proteins in the cerebrospinal fluid proteome by LC-MS/MS profiling and mining of the Human Protein Atlas

description: Additional file 3: Table 1. Brain-enriched proteins of secreted/membrane origin.
DOI: 10.6084/m9.figshare.c.3630548_d1.v1
title: Additional file 1: of Outcomes of TB treatment in HIV co-infected TB patients in Ethiopia: a cross-sectional analytic study

description: Cleaned data on Outcomes of TB treatment Ethiopia. This is the cleaned set of data of the 575 individual study participants that were included in the analysis. It shows the age and gender of the participants, their clinical characteristics and medical care received, and their individual health outcomes. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3630509_d7.v1
title: Additional file 1: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Virulent protein in core proteome: Virulent proteins (295) present in core conserved genome (2445) of A. baumannii are identified, and found out to facilitate the bacteria in its pathogenesis. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3630524_d13.v1
title: Additional file 2: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of lectin domain-containing Populus proteins that lack the protein kinase domain. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630614_d5.v1
title: Additional file 3: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: List of K-means cluster analysis of connectivity genes across development during hypoxia. Relative log2 fold change compared to the developmental average is provided. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3630572_d17.v1
title: Additional file 4: Table S3. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Top candidate SNP in each MESA ethnic group across all regression models. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3630614_d6.v1
title: Additional file 8: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: Data sheets of qRT-PCR results for ryk, nrxn1a, and fezf2. First tab for each gene has raw data; second tab has analysis; third tab has statistical analyses. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.c.3630572_d18.v1
title: Additional file 3: Table S2. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Summary of Subject and SNP Quality Control Procedures. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3630614_d7.v1
title: Additional file 7: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: List of all genes analysis (Ensembl gene ID listed). Cluster assignment is shown; and relative counts in normoxia and hypoxia at different times. (XLSX 261 kb)
DOI: 10.6084/m9.figshare.c.3630623_d2.v1
title: Additional file 1: of Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks

description: Isolates and associated metadata included in this study. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3630614_d8.v1
title: Additional file 6: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: Data sheets of qRT-PCR results for atoh1a, arx, col5A3, htr3a, and zic2b. First tab for each gene has raw data; second tab has analysis; third tab has statistical analyses. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.c.3630524_d15.v1
title: Additional file 13: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: Transcript level of L-type PtLecRLK genes in 24 different datasets from the Populus Gene Atlas Study. RNA-seq data were collected from the Populus Gene Atlas Study in Phytozome v11.0 ( http://phytozome.jgi.doe.gov/pz/portal.html ). The transcript levels for each gene were expressed as FPKM. The sheet labeled as “whole_set” contains the original FPKM values from Gene Atlas. The data of four different tissues under standard condition are sorted in the data sheet labeled as “standard”. The group number is listed in the first column of standard datasheet based on Fig. 3 phylogenetic tree analysis result. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3630524_d16.v1
title: Additional file 1: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: The sequences of primers used for RT-PCR analysis in this study. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3630641_d2.v1
title: Additional file 1: Tables S1–S5. of Prolonged transfer of feces from the lean mice modulates gut microbiota in obese mice

description: Table S1. Taxonomic Assignments Table. Full taxonomic assignments in SILVA Taxonomy, as classified by Mothur. Taxa are given with bootstrap values for each taxonomic level. Taxa are classified to family, unless there was only one classifiable genus (or lower level) present in the family. Table S2. Serum biochemical parameters at the end of the experiment. Normal diet (ND), high-fat diet (HFD), HFD supplemented with feces of ND-fed mice (HFDS). Table S3. Differential taxa abundances between weeks 0 and 12 and weeks 0 and 28, tested with paired Mann-Whitney U-tests for each experimental group. Taxon = taxon denotation (full taxonomic assignments in SILVA taxonomy are presented in Additional file 1: Table S1); Mann-Whitney U statistic = statistic from paired Mann-Whitney U-tests; pValue = p-value from paired Mann-Whitney U-test; qValue = p-value after FDR correction. Table S4. Results of model comparison for taxa. Taxon = taxon denotation (full taxonomic assignments in SILVA taxonomy are presented in Additional file 1: Table S1); pValue time and pValue diet = p-values for comparisons between null models, models including time and models including time and diet, respectively; qValue time and diet = p-values after FDR correction. Table S5. Differential taxa abundances at 12 and 28 weeks. Taxon = bacteria taxon in SILVA taxonomy, genera (if applicable) are given in parentheses; week = week of experiment; comparison = groups compared; mean 1 group = mean abundance of taxon in first group in comparison field; mean 2 group = mean abundance of taxon in second group; pValue = p-value of Mann-Whitney U-tests; qValue = p-value after FDR correction. Taxa that were differentiated in two groups at both time points are highlighted in bold text. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3630842_d1.v1
title: MOESM8 of The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing

description: Additional file 8: Table S1. Genomic sites occupied by Wapal.
DOI: 10.6084/m9.figshare.c.3630851_d1.v1
title: Additional file 1: Table S1. of New epidemiological aspects of visceral and cutaneous leishmaniasis in Taza, Morocco

description: Distribution of leishmaniasis cases in different localities of Taza Province in relation to year (between 2007â  2014) (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3630926_d3.v1
title: Additional file 4: Table S3. of The evolutionary scope and neurological disease linkage of yeast-prion-like proteins in humans

description: Significant PANTHER protein class enrichments for the NQP and prion prediction data sets from human (the same sets that are analyzed in TablesÂ 1, 2, 3 and 4). These are derived using the PANTHER website [48]. (TXT 786 bytes)