cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wavqfu
title: Occurrence Download

description: A dataset containing 758 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Mecyclothorax Sharp, 1903",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 758 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008466-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqurdn
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Lycalopex culpaeus (Molina, 1782))"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008467-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gm4bd
title: Occurrence Download

description: A dataset containing 36366893 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Brazil"
 ]
}

 The dataset includes 36366893 records from 4581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008453-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k7j7x
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041795-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16939853
title: Dataset for:

description: This dataset contains protein target structures, active and decoy molecule (ChEMBL compound ID), and activity labels used in the paper "MotifScreen: Revolutionizing virtual screening and its generalizability via deep learning of interaction patterns". This dataset is for benchmark purposes. 

It includes PDB receptor files, actives.csv and decoys_per_active.csv.
DOI: 10.5281/zenodo.16939854
title: Dataset for:

description: This dataset contains protein target structures, active and decoy molecule (ChEMBL compound ID), and activity labels used in the paper "MotifScreen: Revolutionizing virtual screening and its generalizability via deep learning of interaction patterns". This dataset is for benchmark purposes. 

It includes PDB receptor files, actives.csv and decoys_per_active.csv.
DOI: 10.15468/dl.vf2jnk
title: Occurrence Download

description: A dataset containing 18424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Poa secunda"
 ]
}

 The dataset includes 18424 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041798-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15848594
title: Data for "Single-Cell Mapping of Alternative Splicing Linked to Checkpoint Immunotherapy Response"

description: These data and source code belong to the supplementary materials of the under-review manuscript: "Single-Cell Mapping of Alternative Splicing Linked to Checkpoint Immunotherapy Response", and are provided for peer review only.



detected_ASE_structure.tsv.gz: Structural information of all ASEs identified by JAseC;

ASE_count_and_PSI_per_sample_per_cell_type.tsv.gz: PSI values and junction counts data for ASEs in each major cell type and each sample;

stLFR_validated_ASEs.tsv.gz: ASEs validated by stLFR data;

scATAC_readnum_per_cell_type_in_consensus_peak.tsv.gz: Read counts of each consensus peak in scATAC data, stratified by cell type;

JAseC.tar.gz: Source code of the JAseC program.
DOI: 10.15468/dl.ddqjcz
title: Occurrence Download

description: A dataset containing 587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyprinella trichroistia)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 587 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041799-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxb8qs
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041800-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3k7up
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041801-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqxz3j
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 283 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041802-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecj4ku
title: Occurrence Download

description: A dataset containing 456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Living Specimen, Specimen, Material citation, Material sample, Machine Observation, Occurrence evidence)",
 "Geometry POLYGON((5.52648 49.27785,6.70492 49.27785,6.70492 50.25529,5.52648 50.25529,5.52648 49.27785))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Andrena agilissima, Andrena curvungula, Andrena flavipes, Andrena hattorfiana, Andrena marginata, Andrena nitidiuscula, Andrena vaga, Anthophora plumipes, Dasypoda hirtipes, Eucera longicornis, Halictus sexcinctus, Melitta leporina sakkarae, Nomada fucata, Osmia mitis)",
 "Year is greater than or equal to 2005"
 ]
}

 The dataset includes 456 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041804-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/6328
title: ActionNet
DOI: 10.15468/dl.zx5upg
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlamydogobius eremius)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 624 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041805-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfuc2d
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041807-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xgzrn
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041809-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57un25
title: Occurrence Download

description: A dataset containing 9356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Leonurus japonicus"
 ]
}

 The dataset includes 9356 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041806-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/4uvvfx
title: Herbarium of Taiwan Biodiversity Research Institute, TAIWAN (TAIE)

description: Herbarium of Endemic Species Research Institute, Taiwan (TAIE) was
established in 1993 and plant specimens were collected regularly from that
time. Vascular plants from Taiwan are our major collection. Over 40,000 of
species occurrence records are accessible in this dataset. These
biodiversity data and information are helpful for researchers in the
conservation of threatened species and advancing scientific research.
DOI: 10.15468/dl.qpncf7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Suriname",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041808-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccehb2
title: Occurrence Download

description: A dataset containing 7480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Oncometopia orbona"
 ]
}

 The dataset includes 7480 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041810-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxenvc
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diabrotica virgifera"
 ]
}

 The dataset's 4 records were derived from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041792-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16940067
title: AI Web Store- สโตร์จำหน่าย AI เฉพาะทางบนสถาปัตยกรรมควอนตัม
DOI: 10.15468/dl.k8wvmw
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fundulus sciadicus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 249 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041812-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nz24ah
title: Occurrence Download

description: A dataset containing 1170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Litchi chinensis"
 ]
}

 The dataset includes 1170 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041811-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16939843
title: MRHONEYSET

description: The file sft_train_data_70.json comprises 70 instances of command-output interaction data selected from the supervised fine-tuning training set. Similarly, orpo_train_data_70.json includes 70 instances of command-output interaction data selected from the preference optimization training set. At the same time, test_data_50.json consists of 50 instances of command-output interaction data selected from the test set.
DOI: 10.5281/zenodo.16939844
title: MRHONEYSET

description: The file sft_train_data_70.json comprises 70 instances of command-output interaction data selected from the supervised fine-tuning training set. Similarly, orpo_train_data_70.json includes 70 instances of command-output interaction data selected from the preference optimization training set. At the same time, test_data_50.json consists of 50 instances of command-output interaction data selected from the test set.
DOI: 10.15468/dl.cca2vq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Yemen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041813-250811113504898/datasets/export for details.
DOI: 10.15468/dl.uwge3y
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cucumis anguria",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041814-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e2ve3
title: Occurrence Download

description: A dataset containing 5318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hordeum bulbosum"
 ]
}

 The dataset includes 5318 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041815-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13933974
title: Data set for the study "Assessing the lifetime of anthropogenic CO2 and its sensitivity to different carbon cycle processes"

description: This repository contains the data necessary to reproduce the results of the paper: "Assessing the lifetime of anthropogenic CO2 and its sensitivity to different carbon cycle processes" https://doi.org/10.5194/bg-22-2767-2025

Data organization:

The Zenodo upload is organized as the following inside of results.zip:



Data analysis and figure generation are given by "*.pynb" and "*.m" files

Data files as NetCDF output are organized with the following structure inside of data:



Experiment: REF, noLAND, noWEATH, ECS2, ECS4, intCH4, PATH1, PATH2, and PULSE



Emissions scenario: 0_gtc, 500_gtc, 1000_gtc, 2000_gtc, 3000_gtc, 4000_gtc, and 5000_gtc



Component: atmosphere (atm), land (lnd), ocean (ocn), biogeochemistry (bgc), and the carbon cycle (co2)



Note: for intCH4, there is another file concerning methane (ch4)

Note: surface ocean pH and surface ocean DIC were not part of the standard output in the original CLIMBER-X model. Instead, these variables were calculated during post-processing using 2D spatial data. Since the 2D data was only output every 1 kyr, the first millennium of data was missing. To address this, we re-ran the experiments with surface ocean pH and DIC included in the output for the first 1 kyr. This is why there are additional individual files for pH, DIC, and the Revelle factor (see "fig5_7_8_9.ipynb" for further details).



File type: for each component, files are divided into timeseries (*_ts.nc) or 2D data with a 1 kyr output frequency (*.nc)



Note: due to size constraints of the Zenodo repository, only some 2D spatial data presented in the publication (for the REF experiment) is available. However, this is not an exhaustive dataset. For inquiries regarding additional data, please contact the corresponding author to explore potential availability.
DOI: 10.5281/zenodo.13955664
title: Data set for the study "Assessing the lifetime of anthropogenic CO₂ and its sensitivity to different carbon cycle processes"

description: This repository contains the data necessary to reproduce the results of the paper: "Assessing the lifetime of anthropogenic CO2 and its sensitivity to different carbon cycle processes" https://doi.org/10.5194/egusphere-2024-2976

Data organization:

The Zenodo upload is organized as the following inside of results.zip:



Data analysis and figure generation are given by "*.pynb" and "*.m" files

Data files as NetCDF output are organized with the following structure inside of data:



Experiment: REF, noLAND, noWEATH, ECS2, ECS4, intCH4, PATH1, PATH2, and PULSE



Emissions scenario: 0_gtc, 500_gtc, 1000_gtc, 2000_gtc, 3000_gtc, 4000_gtc, and 5000_gtc



Component: atmosphere (atm), land (lnd), ocean (ocn), biogeochemistry (bgc), and the carbon cycle (co2)



Note: for intCH4, there is another file concerning methane (ch4)

Note: surface ocean pH and surface ocean DIC were not part of the standard output in the original CLIMBER-X model. Instead, these variables were calculated during post-processing using 2D spatial data. Since the 2D data was only output every 1 kyr, the first millennium of data was missing. To address this, we re-ran the experiments with surface ocean pH and DIC included in the output for the first 1 kyr. This is why there are additional individual files for pH, DIC, and the Revelle factor (see "fig5_7_8_9.ipynb" for further details).



File type: for each component, files are divided into timeseries (*_ts.nc) or 2D data with a 1 kyr output frequency (*.nc)



Note: due to size constraints of the Zenodo repository, only the 2D spatial data presented in the publication (for the REF experiment) is available. However, this is not an exhaustive dataset. For inquiries regarding additional data, please contact the corresponding author to explore potential availability.
DOI: 10.15468/dl.e2ay68
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parauchenoglanis altipinnis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041817-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11187708
title: Data set for the study "Interplay between climate and carbon cycle feedbacks could substantially enhance future warming"

description: This repository contains the data necessary to reproduce the results of the paper: "Interplay between climate and carbon cycle feedbacks could substantially enhance future warming" https://iopscience.iop.org/article/10.1088/1748-9326/adb6be

Data organization:

The Zenodo repository is organized as follows inside of results.zip:



Figure generation are given by "*.pynb" and "*.m" files

Data files as NetCDF output are organized with the following structure inside of data:



Experiment/emission scenario: hist-aer, ssp126, ssp434, and ssp245



Equilibrium climate sensitivity: ecs_2.0K, ecs_2.5K, ecs_3.0K, ecs_3.5K, ecs_4.0K, ecs_4.5K, and ecs_5.0K



Experiment: comp, comp_fix_ch4, comp_fix_co2_ch4, comp_ssp_co2_ch4



Component: atmosphere (atm), ocean (ocn), land (lnd), sea ice (sic), carbon dioxide (co2), methane (ch4)

File type: for some experiments, files are divided into timeseries (*_ts.nc) or 2D data (*.nc)

Note: comp_ssp_co2_ch4 are the CLIMBER-X runs which used prescribed concentrations (rather than emissions) and is only available for ECS 3°C

Note: comp_fix_ch4 and comp_fix_co2_ch4 is only available for ECS 2°C, 3°C, and 5°C (as shown in Fig. 4 in the manuscript)