cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3363868
title: My Asteroids Data

description: All Near Earth Objects passing within 10 lunar distances of Earth within the next and last 60 days.
DOI: 10.6084/m9.figshare.3363736
title: Concatenated alignment of Type III RM systems

description: Concatenated alignment for the Type III RM systems of <i>Salmonella enterica </i>ssp<i>. enterica</i>
DOI: 10.6084/m9.figshare.3363757
title: Output of RMFinder

description: The output information from Restriction-ModificationFinder for each of the 221 <i>Salmonella</i> genomes
DOI: 10.6084/m9.figshare.3363895.v1
title: Characterization of bacterial communities associated with <i>Brassica napus</i> L. growing on a Zn contaminated soil and their effects on root growth

description: The interaction between plant growth-promoting bacteria (PGPB) and plants can enhance biomass production and metal tolerance of the host plants. This work aimed at isolating and characterizing the cultivable bacterial community associated with <i>Brassica napus</i> growing on a Zn contaminated site, for selecting cultivable PGPB that might enhance biomass production and metal tolerance of energy crops. The effects of some of these bacterial strains on root growth of <i>B. napus</i> exposed to increasing Zn and Cd concentrations were assessed. A total of 426 morphologically different bacterial strains were isolated from the soil, the rhizosphere, the roots and stems of <i>B. napus</i>. The diversity of the isolated bacterial populations was similar in rhizosphere and roots, but lower in soil and stem compartments. <i>Burkoholderia, Alcaligenes,Agrococcus, Polaromonas, Stenotrophomonas, Serratia, Microbacterium</i> and <i>Caulobacter</i> were found as root endophytes exclusively. The inoculation of seeds with <i>Pseudomonas</i> sp. strains 228 and 256, and <i>Serratia</i> sp. strain 246 facilitated the root development of <i>B. napus</i> at 1000 µM Zn. <i>Arthrobacter</i> sp. strain 222, <i>Serratia</i> sp. strain 246, and <i>Pseudomonas</i> sp. 228 and 262 increased the root length at 300 µM Cd.
DOI: 10.6084/m9.figshare.3363868.v1
title: My Asteroids Data

description: All Near Earth Objects passing within 10 lunar distances of Earth within the next and last 60 days.
DOI: 10.6084/m9.figshare.3363733
title: Tree-file for Type III RM systems

description: Phylogeny of the Type III RM systems found in <i>Salm</i>o<i>nella enterica </i>ssp<i>. enterica</i>
DOI: 10.6084/m9.figshare.3363715
title: Core-genome tree

description: Raw tree file for core-genome tree of <i>Salmonella enterica </i>ssp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363721
title: Pan-genome tree

description: Raw tree file for pan-genome tree of <i>Salmonella enterica </i>ssp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363736.v1
title: Concatenated alignment of Type III RM systems

description: Concatenated alignment for the Type III RM systems of <i>Salmonella enterica </i>ssp<i>. enterica</i>
DOI: 10.6084/m9.figshare.3363715.v1
title: Core-genome tree

description: Raw tree file for core-genome tree of <i>Salmonella enterica </i>ssp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363733.v1
title: Tree-file for Type III RM systems

description: Phylogeny of the Type III RM systems found in <i>Salm</i>o<i>nella enterica </i>ssp<i>. enterica</i>
DOI: 10.6084/m9.figshare.3363559
title: Core-gene clusters

description: Gene clusters of the 2,138 <i>Salmonella</i> Core genes for all 221 genomes in .tar.gz format
DOI: 10.6084/m9.figshare.3363706
title: Concatenated alignment for Core-genome tree

description: Concatenated alignment for Core-genome tree of <i>Salmonella enterica</i> spp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363721.v1
title: Pan-genome tree

description: Raw tree file for pan-genome tree of <i>Salmonella enterica </i>ssp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363532
title: Table_Mountain_Metadata

description: Metadata for Table Mountain merged sequences. Includes bulk soil, quartz associated soil, and aggregate associated soil.
DOI: 10.6084/m9.figshare.3363706.v1
title: Concatenated alignment for Core-genome tree

description: Concatenated alignment for Core-genome tree of <i>Salmonella enterica</i> spp. <i>enterica</i>
DOI: 10.6084/m9.figshare.3363532.v1
title: Table_Mountain_Metadata

description: Metadata for Table Mountain merged sequences. Includes bulk soil, quartz associated soil, and aggregate associated soil.
DOI: 10.6084/m9.figshare.3363559.v1
title: Core-gene clusters

description: Gene clusters of the 2,138 <i>Salmonella</i> Core genes for all 221 genomes in .tar.gz format
DOI: 10.6084/m9.figshare.3363502
title: Pan-gene clusters

description: Gene clusters of the 16,375 <i>Salmonella</i> Pan genes for all 221 genomes in .tar.gz format
DOI: 10.6084/m9.figshare.3363502.v1
title: Pan-gene clusters

description: Gene clusters of the 16,375 <i>Salmonella</i> Pan genes for all 221 genomes in .tar.gz format
DOI: 10.6084/m9.figshare.3363505
title: Table Mountain Data

description: Table_Mountain_merged_seqs.fq: Merged paired end 16S sequences amplified with primer pair 515f/806r. 30 soils were collected from a grassland terrace near Boulder, Colorado (105.23W, 40.12N, Table Mountain) from two pits at a depth of 25 cm within a 100m<sup>2</sup> area on 28Jan15. Samples were either bulk soil or rock associated; rock associated soil was scraped from the surface of rocks embedded in the soil profile. TableMnt_Mapping.txt: Metadata for Table Mountain merged sequences. Includes bulk soil, quartz associated soil, and aggregate associated soil.
DOI: 10.6084/m9.figshare.3363451
title: Land cover and land use changes in a Brazilian Cerrado landscape: drivers, processes, and patterns

description: The Cerrado is one of the most threatened biomes in South America. To create protection actions on any scale, understanding drivers and consequences of land cover and land use (LC and LU) is essential. This study defines the composition and configuration of a Cerrado landscape watershed from 1975 to 2011. Using Landsat images and socioeconomic census data, we determined the forces acting on LC and LU change processes and their consequences. LC classes differ from LU classes for landscape dominance and processes. Economic opportunities drove LU change and its spatial distribution was related to soil, streams, and roads. Deforestation was the main cause of forest loss but forest degradation was also important, with both presenting different patterns. The spatial distribution of bare soil was related to pasture in degradation and streams. Bare soil distribution was related to pasture in degradation and streams. We concluded that broad scale factors drove changes, but local features determined distribution, and that watershed conservation plans should act on different scales, with management being spatially explicit.
DOI: 10.6084/m9.figshare.3363352
title: Electronic Supplement for "Evolution of Sustained Foraging in Three-Dimensional Environments with Physics"

description: Electronic Supplement to the manuscript "Evolution of Sustained Foraging in Three-Dimensional Environments with Physics" in the journal "Genetic Programming and Evolvable Machines". The supplement describes the EVO platform and the genetic language that is used in EVO.
DOI: 10.6084/m9.figshare.3363451.v1
title: Land cover and land use changes in a Brazilian Cerrado landscape: drivers, processes, and patterns

description: The Cerrado is one of the most threatened biomes in South America. To create protection actions on any scale, understanding drivers and consequences of land cover and land use (LC and LU) is essential. This study defines the composition and configuration of a Cerrado landscape watershed from 1975 to 2011. Using Landsat images and socioeconomic census data, we determined the forces acting on LC and LU change processes and their consequences. LC classes differ from LU classes for landscape dominance and processes. Economic opportunities drove LU change and its spatial distribution was related to soil, streams, and roads. Deforestation was the main cause of forest loss but forest degradation was also important, with both presenting different patterns. The spatial distribution of bare soil was related to pasture in degradation and streams. Bare soil distribution was related to pasture in degradation and streams. We concluded that broad scale factors drove changes, but local features determined distribution, and that watershed conservation plans should act on different scales, with management being spatially explicit.
DOI: 10.6084/m9.figshare.3363352.v1
title: Electronic Supplement for "Evolution of Sustained Foraging in Three-Dimensional Environments with Physics"

description: Electronic Supplement to the manuscript "Evolution of Sustained Foraging in Three-Dimensional Environments with Physics" in the journal "Genetic Programming and Evolvable Machines". The supplement describes the EVO platform and the genetic language that is used in EVO.
DOI: 10.6084/m9.figshare.3363505.v1
title: Table_Mountain_merged_seqs.fq

description: Merged paired end 16S sequences amplified with primer pair 515f/806r. 30 soils were collected from a grassland terrace near Boulder, Colorado (105.23W, 40.12N, Table Mountain) from two pits at a depth of 25 cm within a 100m<sup>2</sup> area on 28Jan15. Samples were either bulk soil or rock associated; rock associated soil was scraped from the surface of rocks embedded in the soil profile.
DOI: 10.6084/m9.figshare.3363505.v3
title: Table Mountain Data

description: Table_Mountain_merged_seqs.fq: Merged paired end 16S sequences amplified with primer pair 515f/806r. 30 soils were collected from a grassland terrace near Boulder, Colorado (105.23W, 40.12N, Table Mountain) from two pits at a depth of 25 cm within a 100m<sup>2</sup> area on 28Jan15. Samples were either bulk soil or rock associated; rock associated soil was scraped from the surface of rocks embedded in the soil profile. TableMnt_Mapping.txt: Metadata for Table Mountain merged sequences. Includes bulk soil, quartz associated soil, and aggregate associated soil.
DOI: 10.6084/m9.figshare.3363196
title: metagenomics of complex microbial communities

description: handouts of the lectures in the metagenomics course organised by siam gravitation 024 002002 www.anaerobic-microbiology.eu
DOI: 10.6084/m9.figshare.3363505.v2
title: Table_Mountain_merged_seqs.fq

description: Merged paired end 16S sequences amplified with primer pair 515f/806r. 30 soils were collected from a grassland terrace near Boulder, Colorado (105.23W, 40.12N, Table Mountain) from two pits at a depth of 25 cm within a 100m<sup>2</sup> area on 28Jan15. Samples were either bulk soil or rock associated; rock associated soil was scraped from the surface of rocks embedded in the soil profile.
DOI: 10.6084/m9.figshare.3363151
title: Table S1 Assembly contigs

description: the assembly contigs of chinese fir
DOI: 10.6084/m9.figshare.3363196.v1
title: metagenomics of complex microbial communities

description: handouts of the lectures in the metagenomics course organised by siam gravitation 024 002002 www.anaerobic-microbiology.eu
DOI: 10.6084/m9.figshare.3363145
title: anaerobic oxidation of methane

description: handouts of the lecture during the mini symposium on c1 compounds at uae norwich uk
DOI: 10.6084/m9.figshare.3363151.v1
title: Table S1 Assembly contigs

description: the assembly contigs of chinese fir
DOI: 10.6084/m9.figshare.3363052
title: Workforce Scheduling and Routing Problem instances with MultiModal Journey Data

description: A set of workforce scheduling and routing problem instances and real world travel data (times and emissions). Three sets of problem instances are available, two based on the City of London (UK) and one based on the City of Edinburgh. Full details of the data formats are the problem are contained in readme.pdf<br><br>
DOI: 10.6084/m9.figshare.3363013
title: Cabotage between Malagasy sea ports, 2008

description: Trade flows in Madagascar : dhows and caboes(origins and destinations.
DOI: 10.6084/m9.figshare.3362899
title: Genome trees and alignment fasta amino acid files

description: Placement of microbial draft genomes recovered from the Red Sea into archaeal and bacterial genome trees inferred from concatenation of 122 and 120 proteins, respectively.
DOI: 10.6084/m9.figshare.3363013.v1
title: Cabotage between Malagasy sea ports, 2008

description: Trade flows in Madagascar : dhows and caboes(origins and destinations.
DOI: 10.6084/m9.figshare.3363052.v2
title: Workforce Scheduling and Routing Problem instances with MultiModal Journey Data

description: A set of workforce scheduling and routing problem instances and real world travel data (times and emissions). Three sets of problem instances are available, two based on the City of London (UK) and one based on the City of Edinburgh. Full details of the data formats are the problem are contained in readme.pdf<br><br>
DOI: 10.6084/m9.figshare.3362815
title: Malagasy cattle-trade network, 2010

description: Origins and destinations cattle movements in Madagascar, 2010. <br>
DOI: 10.6084/m9.figshare.3362815.v1
title: Malagasy cattle-trade network, 2010

description: Origins and destinations cattle movements in Madagascar, 2010. <br>
DOI: 10.6084/m9.figshare.3363052.v1
title: MultiModal Journey Data

description: A set of workforce scheduling and routing problem instances and real world travel data (times and emissions). Three sets of problem instances are available, two based on the City of London (UK) and one based on the City of Edinburgh. Full details of the data formats are the problem are contained in readme.pdf<br><br>
DOI: 10.6084/m9.figshare.11925726
title: Data and analyses for "The Impact of ROTO Track® in Helping Patients With Diabetes Rotate Their Insulin Injections Better (ROTOone)"

description: The data collected during the study "The Impact of ROTO Track® in Helping Patients With Diabetes Rotate Their Insulin Injections Better (ROTOone)".<br>The package additionally contains the data analysis output, figures and tables produced along with the code and instructions to reproduce the calculations.<br><br>
DOI: 10.6084/m9.figshare.3362722
title: RegressionResultsReducedSample Final.docx

description: This updated table refers to a letter written in response to our PLoS article dealing with the association of corruption and antibiotic resistance. Removing the first couple of years from the regressions addresses the main concern of Heister and Kaier, which was the number of tested isolates underlying the average resistance in the earliest year, which they believe were insufficient (especially for Estonia and Sweden). It should be noted however that we had used the percentages for resistance as supplied by the European Centre for Disease Prevention and Control (ECDC) on their website. These same issues raised by Heister and Kaier thus pertain to the small minority of these widely accepted results but based only on small numbers as published by this EU agency.<br> <br> We attach the updated regression results, and also a brief note below to explain what we did to address the issues raised. The updated regressions results relate to Columns 2,3,5 and 6 in Table 3 of the original paper. <br> <br>
DOI: 10.6084/m9.figshare.3362716
title: Figure files for "Self-organization of chemoattractant waves in Dictyostelium depends on F-actin and cell-substrate adhesion. "

description: MATLAB and excel files for the figures.
DOI: 10.6084/m9.figshare.3362722.v1
title: RegressionResultsReducedSample Final.docx

description: This updated table refers to a letter written in response to our PLoS article dealing with the association of corruption and antibiotic resistance. Removing the first couple of years from the regressions addresses the main concern of Heister and Kaier, which was the number of tested isolates underlying the average resistance in the earliest year, which they believe were insufficient (especially for Estonia and Sweden). It should be noted however that we had used the percentages for resistance as supplied by the European Centre for Disease Prevention and Control (ECDC) on their website. These same issues raised by Heister and Kaier thus pertain to the small minority of these widely accepted results but based only on small numbers as published by this EU agency.<br> <br> We attach the updated regression results, and also a brief note below to explain what we did to address the issues raised. The updated regressions results relate to Columns 2,3,5 and 6 in Table 3 of the original paper. <br> <br>
DOI: 10.6084/m9.figshare.3362716.v1
title: Figure files for "Self-organization of chemoattractant waves in Dictyostelium depends on F-actin and cell-substrate adhesion. "

description: MATLAB and excel files for the figures.
DOI: 10.6084/m9.figshare.3362668
title: Immunometabolic status during the peripartum period is enhanced with supplemental Zn, Mn, and Cu from amino acid complexes and Co from Co glucoheptonate

description: Twenty Holstein cows received a common prepartal diet and postpartal diet. Both diets were partially supplemented with an inorganic (INO)mix of Zn, Mn, and Cu to supply 35, 45, and 6 ppm, respectively, of the diet dry matter. Cows were assigned to treatments in a randomized completed block design, receiving a daily oral bolus with inorganic or organic trace minerals (AAC) Zn, Mn, Cu, and Co to achieve 75, 65, 11, and 1 ppm supplemental, respectively, in the entire diet dry matter. Liver tissue and blood samples were collected at -30, -15, 10, and 30 d and -30, -14, 3, 15, and 30 d relative to parturition, respectively. Gene expression and biomarkers related to liver function, inflammation, oxidative stress, metabolism, and hepatokines were measured in liver and blood samples, respectively.
DOI: 10.6084/m9.figshare.3362683
title: Structure, late Quaternary slip rate and earthquake potential of marine reverse faults along the North Westland deformation front, New Zealand

description: The North Westland deformation front runs offshore for 320 km between Cape Farewell and Hokitika at a distance of 3–30 km from the coast. From marine seismic reflection profiles integrated with published sediment core and coastal uplift data, we infer late Quaternary activity on six major reverse faults. The principal structures are the Cape Foulwind, Kahurangi and Kongahu faults and the newly named Farewell, Elizabeth and Razorback faults. They include Late Cretaceous and Paleogene rift faults that were reactivated as reverse faults during the late Cenozoic. Best estimates of late Quaternary (&lt;120 ka) slip rates for different faults range from 0.05–0.75 mm a<sup>–1</sup>. Nine potential earthquake sources are identified, including four segments of the Cape Foulwind Fault. They are of length c. 20–120 km, are potentially capable of producing moderate- to large-magnitude earthquakes of <i>M</i><sub>w</sub> 6.7–7.8 and represent a seismic risk to coastal communities. Best estimates of recurrence intervals for individual fault sources range from about 7600 years to 30,400 years, with large uncertainties in slip rates of up to –0.4, +1.0 mm a<sup>–1</sup> reflected by the wide range of recurrence intervals.
DOI: 10.6084/m9.figshare.3362686
title: High-resolution view of active tectonic deformation along the Hikurangi subduction margin and the Taupo Volcanic Zone, New Zealand

description: Understanding the mechanisms and dynamics of deformation at plate boundaries requires high-resolution images of strain and deformation sources. Vertical derivatives of horizontal stress (VDoHS) rates are the horizontal-component surface manifestation of all subsurface deformation sources, and have substantially higher spatial resolution than GPS velocities or strain rates. We calculate VDoHS rates from GPS data at the Hikurangi subduction margin. We evaluate our results in the context of interseismic coupling on the subduction interface and upper plate deformation processes. Instead of the expected rifting signal we find strong contraction within the Taupo Volcanic Zone, indicating non-tectonic effects from magmatic and/or hydrothermal processes. Differences between <i>S</i><sub>Hmax</sub> directions from historical seismicity (Townend et al. 2012) and our maximum contraction directions demonstrate that at the Hikurangi margin historical seismicity and active faulting are strongly controlled by long-term processes, such as rotation of the forearc, rather than short-term, elastic strain from interseismic subduction interface locking.
DOI: 10.6084/m9.figshare.3362683.v1
title: Structure, late Quaternary slip rate and earthquake potential of marine reverse faults along the North Westland deformation front, New Zealand

description: The North Westland deformation front runs offshore for 320 km between Cape Farewell and Hokitika at a distance of 3–30 km from the coast. From marine seismic reflection profiles integrated with published sediment core and coastal uplift data, we infer late Quaternary activity on six major reverse faults. The principal structures are the Cape Foulwind, Kahurangi and Kongahu faults and the newly named Farewell, Elizabeth and Razorback faults. They include Late Cretaceous and Paleogene rift faults that were reactivated as reverse faults during the late Cenozoic. Best estimates of late Quaternary (&lt;120 ka) slip rates for different faults range from 0.05–0.75 mm a<sup>–1</sup>. Nine potential earthquake sources are identified, including four segments of the Cape Foulwind Fault. They are of length c. 20–120 km, are potentially capable of producing moderate- to large-magnitude earthquakes of <i>M</i><sub>w</sub> 6.7–7.8 and represent a seismic risk to coastal communities. Best estimates of recurrence intervals for individual fault sources range from about 7600 years to 30,400 years, with large uncertainties in slip rates of up to –0.4, +1.0 mm a<sup>–1</sup> reflected by the wide range of recurrence intervals.
DOI: 10.6084/m9.figshare.3362686.v1
title: High-resolution view of active tectonic deformation along the Hikurangi subduction margin and the Taupo Volcanic Zone, New Zealand

description: Understanding the mechanisms and dynamics of deformation at plate boundaries requires high-resolution images of strain and deformation sources. Vertical derivatives of horizontal stress (VDoHS) rates are the horizontal-component surface manifestation of all subsurface deformation sources, and have substantially higher spatial resolution than GPS velocities or strain rates. We calculate VDoHS rates from GPS data at the Hikurangi subduction margin. We evaluate our results in the context of interseismic coupling on the subduction interface and upper plate deformation processes. Instead of the expected rifting signal we find strong contraction within the Taupo Volcanic Zone, indicating non-tectonic effects from magmatic and/or hydrothermal processes. Differences between <i>S</i><sub>Hmax</sub> directions from historical seismicity (Townend et al. 2012) and our maximum contraction directions demonstrate that at the Hikurangi margin historical seismicity and active faulting are strongly controlled by long-term processes, such as rotation of the forearc, rather than short-term, elastic strain from interseismic subduction interface locking.
DOI: 10.6084/m9.figshare.3362668.v2
title: Immunometabolic status during the peripartum period is enhanced with supplemental Zn, Mn, and Cu from amino acid complexes and Co from Co glucoheptonate

description: Twenty Holstein cows received a common prepartal diet and postpartal diet. Both diets were partially supplemented with an inorganic (INO)mix of Zn, Mn, and Cu to supply 35, 45, and 6 ppm, respectively, of the diet dry matter. Cows were assigned to treatments in a randomized completed block design, receiving a daily oral bolus with inorganic or organic trace minerals (AAC) Zn, Mn, Cu, and Co to achieve 75, 65, 11, and 1 ppm supplemental, respectively, in the entire diet dry matter. Liver tissue and blood samples were collected at -30, -15, 10, and 30 d and -30, -14, 3, 15, and 30 d relative to parturition, respectively. Gene expression and biomarkers related to liver function, inflammation, oxidative stress, metabolism, and hepatokines were measured in liver and blood samples, respectively.