cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gf1vhhmxv
title: Data from: From fossils to phylogenies: Exploring the integration of paleontological data into Bayesian phylogenetic inference

description: Incorporating paleontological data into phylogenetic inference can greatly
 enrich our understanding of evolutionary relationships by providing
 insights into the diversity and morphological evolution of a clade over
 geological time scales. Phylogenetic analysis of fossil data has been
 significantly aided by the introduction of the fossilized birth-death
 (FBD) process, a model that accounts for fossil sampling through time. A
 decade on from the first implementation of the FBD model, we explore its
 use in over 170 empirical studies, summarising insights gained through its
 application. We identify a number of challenges in applying the model in
 practice: it requires a working knowledge of paleontological data and its
 complex properties, Bayesian phylogenetics, and the mechanics of
 evolutionary models. To address some of these difficulties, we provide an
 introduction to the Bayesian phylogenetic framework, discuss important
 aspects of paleontological data, and finally describe the assumptions of
 the models used in paleobiology. We also present a number of exemplar
 empirical studies that have used the FBD model in different ways. Through
 this review, we aim to provide clarity on how paleontological data can
 best be used in phylogenetic inference. We hope to encourage communication
 between model developers and empirical researchers, with the ultimate goal
 of developing models that better reflect the data we have and the
 processes that generated them.
description: # Data from: From fossils to phylogenies: Exploring the integration of
 paleontological data into Bayesian phylogenetic inference
 [https://doi.org/10.5061/dryad.gf1vhhmxv](https://doi.org/10.5061/dryad.gf1vhhmxv) ## Description of the data and file structure Supplementary.pdf: Criteria used for the literature carried out in "From fossils to phylogenies: Exploring the integration of paleontological data into Bayesian phylogenetic inference".  TableS2.csv: Results from literature survey.
DOI: 10.5067/karin-2rsp1
title: SWOT Simulated Level 2 North America Continent High Rate River Vectors Product Version 1.0
DOI: 10.5067/locss-l1v10
title: The Lake Observations by Citizen Scientists &amp; Satellites (LOCSS) Level 1 Version 1.0
DOI: 10.5067/swot-fpdem-1.0
title: SWOT Level 2 Floodplain Digital Elevation Map Data Product
DOI: 10.5067/swot-moe-1.0
title: SWOT Medium-accuracy Orbit Ephemeris (MOE)
DOI: 10.5067/swot-sos-rd3
title: SWOT Level 4 Sword of Science River Discharge Products, Version 3
DOI: 10.5067/swot-moe-1.1
title: SWOT Medium-accuracy Orbit Ephemeris (MOE) Version 1.1
DOI: 10.5067/swot-nalt-gdr-2.0
title: SWOT Level 2 Nadir Altimeter Geophysical Data Record with Waveforms Version 2.0
DOI: 10.15468/dl.t56ykf
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tomistoma schlegelii",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 32 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004127-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21223/p3/rvchkv
title: Dataset for: Participatory Varietal Selection of 7 with frost tolerant clones in the localities of San Juan Bajo, La Soledad and Macullida in La Libertad, Peru

description: The Mother and Baby (M&B) trial methodology was adapted by CIP for Participatory Variety Selection (PVS) through decentralized evaluation networks and multi-year evaluations in potato growing areas in the Andean region. The M&B trial design encourages active participation of farmers through the application of treatments through systematic evaluations and selections of treatments in their own plots called "Baby trials" (i.e. farmer managed trials) and in fields with an experimental design called "Mother trials" (i.e. researcher managed trials). Objective: Analyze characteristics, attributes and preferences that men and women have when selecting a new potato variety at the phase of flowering and harvesting. A M&B trial was performed to evaluate 11 clones with frost tolerance in the locality of San Juan Bajo and 7 clones in the localities of La Soledad and Macullida, in the province of Sanchez Carrion, in La Libertad department, Peru. The trial design was a Randomized Complete Block Design (RCBD) with 3 replicates for Mother trials and 3 replicates for Baby trials during 2012-2013. In this experiment, characteristics of plant (size, type of foliage), yield, desirable quality, pest and disease resistance during flowering and harvesting were evaluated. Total number of participants at flowering phase was 36 (men=28 and women=8) at the locality of San Juan Bajo, 9 (men=5, women = 4) at the locality of La Soledad, and 9 (men=4, women = 5) in the locality of Macullida. Total number of participants at harvesting phase was 33 (men=20 and women=13) at the locality of San Juan Bajo, 9 (men=5, women = 4) at the locality of La Soledad, and 9 (men=4, women = 5) in the locality of Macullida. Additionally, an organoleptic evaluation was assessed at harvesting to evaluate appearance, taste and texture. The number of panelists was 10 (men=5, women=5) for the organoleptic evaluation.
DOI: 10.5067/swot-rad-gdr-2.0
title: SWOT Level 2 Radiometer Brightness Temperatures and Troposphere Data Product Version 2.0
DOI: 10.5067/swtpo-moor3
title: SWOT Postlaunch Oceanography Field Campaign L3 Moorings
DOI: 10.5067/swtpo-moor1
title: SWOT Postlaunch Oceanography Field Campaign L1 Moorings
DOI: 10.15468/dl.9e6bnm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lista de chequeo de plantas, aves, mamíferos, anfibios y reptiles del Corredor de Conservación de Bosques Andinos en el departamento de Caldas"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004128-260126135527185/datasets/export for details.
DOI: 10.5067/swtpo-moor2
title: SWOT Postlaunch Oceanography Field Campaign L2 Moorings
DOI: 10.5061/dryad.qv9s4mwpt
title: Full inventory data statistics of the 10 permanent inventory plots installed in the Moni river transects

description: The tropical forests of the Congo Basin are characterised by an unusual
 abundance of light-demanding species in the canopy. To investigate the
 origin of this phenomenon, ten permanent biodiversity monitoring plots
 were installed in the Moni River catchment (Yangambi, Democratic Republic
 of the Congo). A previous study was carried out to investigate the spatial
 distribution of these light-demanding species within this catchment. For
 the purpose of this study, light-demanding species were classified into
 three functional types: short-lived pioneers (SLP), long-lived pioneers
 (LLP) and non-pioneer light-demanding species (NPLD). In
 addition, Gilbertiodendron dewevrei, a particular shade-tolerant
 species, was included as a control. This prior study identified
 highlighted pockets of light-demanding species from each functional type,
 as well as pockets of G. dewevrei. Within these pockets, permanent plots
 were installed: one plot in SLP pockets, three plots in LLP pockets, two
 plots in NPLD pockets, two plots in mixed forest areas outside pockets,
 and two plots in G. dewevrei pockets. The dataset presented here provides
 the number of stems inventoried for each species and functional type in
 each plot installed throughout the Moni catchment.
description: The data provided in this database are the numbers of each
 functional type and each species inventoried in the ten plots installed in
 the Moni catchment area. To obtain them, we simply counted the number of
 trees belonging to a functional type or species in each permanent
 plot.
description: # Full inventory data statistics of the 10 permanent inventory plots
 installed in the Moni river transects
 [https://doi.org/10.5061/dryad.qv9s4mwpt](https://doi.org/10.5061/dryad.qv9s4mwpt) ## Description of the data and file structure # README file The database ‘Full inventory data statistics of the 10 permanent inventory plots installed in the Moni river transects’ can be understood by considering the following: 1\. The data concern the number of trees per functional type and per species inventoried in each plot. 2\. Guild: functional type 3\. SLP-01: the one permanent plot installed in the pocket of short-lived pioneer species. 4\. LLP-01, LLP-02 and LLP-03: are the three permanent plots installed in the pockets of long-lived pioneer species 5\. NPLD-01 and NPLD-02: are the two permanent plots installed in the pockets of non-pioneer light-demanders. 6\. MIX-01 and MIX-02: are the two permanent plots installed in the mixed forest outside the pockets. 7\. GIL-01 and GIL-02: are the two permanent plots installed in the pockets of *Gilbertiodendron dewevrei*.
DOI: 10.5067/swot-lakeavg-d
title: SWOT Level 2 Lake Cycle-Averaged Data Product
DOI: 10.5067/swot-slc-d
title: SWOT Level 1B High-Rate Single-look Complex Data Product
DOI: 10.5067/swot-intf-d
title: SWOT Level 1B Low-Rate Interferogram Data Product
DOI: 10.15468/dd.utapgz
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.5067/swot-lakesp-d
title: SWOT Level 2 Lake Single-Pass Vector Data Product
DOI: 10.5067/swot-pixcvec-d
title: SWOT Level 2 Water Mask Pixel Cloud Auxiliary Data Product
DOI: 10.5061/dryad.2280gb62f
title: MCount: An automated colony counting tool for high-throughput microbiology

description: Accurate colony counting is crucial for assessing microbial growth in
 high-throughput workflows. However, existing automated counting solutions
 struggle with the issue of merged colonies, a common occurrence in
 high-throughput plating. To overcome this limitation, we propose MCount,
 the only known solution that incorporates both contour information and
 regional algorithms for colony counting. By optimizing the pairing of
 contours with regional candidate circles, MCount can accurately infer the
 number of merged colonies. We evaluate MCount on a precisely labeled
 Escherichia coli dataset of 960 images (15,847 segments) and achieve an
 average error rate of 3.99%, significantly outperforming existing
 published solutions such as NICE (16.54%), AutoCellSeg (33.54%), and
 OpenCFU (50.31%). MCount is user friendly as it only requires two
 hyperparameters. To further facilitate deployment in scenarios with
 limited labeled data, we propose statistical methods for selecting the
 hyperparameters using few labeled or even unlabeled datapoints, all of
 which guarantee consistently low error rates. MCount presents a promising
 solution for accurate and efficient colony counting in application
 workflows requiring high throughput, particularly in cases with merged
 colonies.
description: Folder "96 well colonies"
 contains 10 microplate images with the original resolution.  Folder
 "results" contains a segmentation and quantification results
 from the microplate images. Folder "Codes" includes Python
 source codes.
description: # MCount: An automated colony counting tool for high-throughput
 microbiology
 [https://doi.org/10.5061/dryad.2280gb62f](https://doi.org/10.5061/dryad.2280gb62f) #### File: Codes.zip **Description:** Includes .ipynb Python source code and example images / results. #### File: 96-well plate.zip **Description:** Contains 10 microplate images of the original resolution. Each filename is self-explanatory (an image was independently taken at a different condition or timepoint) #### File: results.zip **Description:** Contains a segmentation and quantified data from the microplate images necessary for replicating the study. * Each subfolder "image_1", "image 2"... "image 10" corresponds to data analyzed from the original image contained in folder "96-well plate.zip" * In each subfolder (e.g., "results/image_1"), there are 96 JPG images with filenames ending with from "A1.jpg" to "H12.jpg". They are partitions of the original image and refer to the well number of the microplate. * In each subfolder, file named as "groundtruth.csv" refers to colony number that was manually counted by a human. * In each subfolder, file named as "NICE.csv" refers to colony number that was analyzed by NICE software. * In each subfolder, files named as "d_[xx] lambda [yy].csv" refer to colony number that was analyzed by MCount. In specific, [xx] refers to a value of hyperparameter "d" or "d_t",  and [yy] the value of λ (greek "lambda") that were set for running the script.
DOI: 10.5067/swot-pixc-d
title: SWOT Level 2 Water Mask Pixel Cloud Data Product
DOI: 10.5067/swot-raster-d
title: SWOT Level 2 Water Mask Raster Image Data Product
DOI: 10.5067/swot-riveravg-d
title: SWOT Level 2 River Cycle-Averaged Data Product
DOI: 10.5067/swot-ssh-d
title: SWOT Level 2 KaRIn Low Rate Sea Surface Height Data Product
DOI: 10.6084/m9.figshare.29346855
title: Approximate controllability of impulsive semilinear evolution equations in Hilbert spaces

description: Several dynamical systems in fields such as engineering, chemistry, biology, and physics show impulsive behaviour by reason of unexpected changes at specific times. These behaviours are described by differential systems under impulse effects. The current paper examines approximate controllability for semi-linear impulsive differential and neutral differential equations in Hilbert spaces. By applying a fixed-point method and semigroup theory, a new sufficient condition is provided for the (A-controllability) approximate controllability of neutral and impulsive differential equations (IDEs). To demonstrate the value of the suggested consequences, three examples are presented, offering improvements over some recent findings.
DOI: 10.6084/m9.figshare.29346855.v1
title: Approximate controllability of impulsive semilinear evolution equations in Hilbert spaces

description: Several dynamical systems in fields such as engineering, chemistry, biology, and physics show impulsive behaviour by reason of unexpected changes at specific times. These behaviours are described by differential systems under impulse effects. The current paper examines approximate controllability for semi-linear impulsive differential and neutral differential equations in Hilbert spaces. By applying a fixed-point method and semigroup theory, a new sufficient condition is provided for the (A-controllability) approximate controllability of neutral and impulsive differential equations (IDEs). To demonstrate the value of the suggested consequences, three examples are presented, offering improvements over some recent findings.
DOI: 10.5281/zenodo.18392563
title: Experimental_Raman_WP3_FORTH

description: This dataset was generated as part of DYNASTY project activities (specifically WP3, samples preparation, data production and data analysis), to support the characterization of the physical properties of van der Waals heterojunctions. Raman spectroscopy measurements were conducted to evaluate the optical response and strain in WS2/graphite heterojunctions.
DOI: 10.6084/m9.figshare.29911926
title: Necessary optimality conditions for a new type of singular controls in optimal control problems

description: The paper is devoted to the study of the optimality of the Pontryagin extremal in the Mayer-type optimal control problem. To do this, a new type of singular control is introduced. The research method in this paper is based on the introduction of special variations of the considered singular control. To obtain more subtle equality and inequality type necessary optimality conditions, the variation introduced here is used in two forms: the variation on the right and left with respect to the fixed point. The necessary optimality conditions obtained in this paper also depend on the numerical parameter. Next, applying one of the necessary optimality conditions obtained here, the second variation of the objective functional is studied, and the well-known Kelley necessary condition is obtained. The effectiveness of the main results of this work is illustrated by specific examples.
DOI: 10.6084/m9.figshare.29911926.v1
title: Necessary optimality conditions for a new type of singular controls in optimal control problems

description: The paper is devoted to the study of the optimality of the Pontryagin extremal in the Mayer-type optimal control problem. To do this, a new type of singular control is introduced. The research method in this paper is based on the introduction of special variations of the considered singular control. To obtain more subtle equality and inequality type necessary optimality conditions, the variation introduced here is used in two forms: the variation on the right and left with respect to the fixed point. The necessary optimality conditions obtained in this paper also depend on the numerical parameter. Next, applying one of the necessary optimality conditions obtained here, the second variation of the objective functional is studied, and the well-known Kelley necessary condition is obtained. The effectiveness of the main results of this work is illustrated by specific examples.
DOI: 10.5067/swot-riversp-d
title: SWOT Level 2 River Single-Pass Vector Data Product
DOI: 10.5281/zenodo.18392562
title: Experimental_Raman_WP3_FORTH

description: This dataset was generated as part of DYNASTY project activities (specifically WP3, samples preparation, data production and data analysis), to support the characterization of the physical properties of van der Waals heterojunctions. Raman spectroscopy measurements were conducted to evaluate the optical response and strain in WS2/graphite heterojunctions.
DOI: 10.5067/swot-nalt-ogdr-d
title: SWOT Level 2 Nadir Altimeter Operational Geophysical Data Record with Waveforms
DOI: 10.5067/swot-nalt-igdr-d
title: SWOT Level 2 Nadir Altimeter Interim Geophysical Data Record with Waveforms
DOI: 10.5067/swtpo-spbd1
title: SWOT Postlaunch Oceanography Field Campaign Shipboard CTD and Water Sample Data
DOI: 10.5067/swtpo-gldr1
title: SWOT Post-launch Field Campaign Data from Gliders
DOI: 10.5067/swot-rad-igdr-d
title: SWOT Level 2 Radiometer Brightness Temperatures and Troposphere Interim Data Product
DOI: 10.5067/swot-rad-gdr-d
title: SWOT Level 2 Radiometer Brightness Temperatures and Troposphere Data Product
DOI: 10.5067/swot-attd-2.0
title: SWOT Satellite Reconstructed Attitude Data, Version 2.0
DOI: 10.15139/s3/gxd8rw
title: Data Management and Sharing Plan for: Personalized Patient Reported Outcome (PRO) Reports Using Machine Learning

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.5067/swot-satcom-1.0
title: SWOT Satellite Center of Mass Position Data
DOI: 10.5067/swot-doris-1.0
title: SWOT Level 1 Onboard Tracking Data from Doppler Orbitography and Radiopositioning Integrated by Satellite (DORIS)
DOI: 10.5061/dryad.nzs7h450k
title: Data from: Above- and belowground plant pathogens along elevational gradients: Patterns and potential mechanisms

description: Plant pathogens are important for community assembly and ecosystem
 functioning and respond to a variety of abiotic and biotic factors, which
 may change along elevational gradients. Thus, elevational gradients are a
 valuable model system for exploring how environmental, plant community and
 soil factors influence pathogen communities. Yet, how these factors
 influence pathogens in natural ecosystems remains poorly understood. We
 examined the dynamics of plant fungal pathogens along elevational
 gradients, as well as the mechanisms shaping these dynamics, by combining
 a field survey on the Tibetan Plateau with a global meta-analysis. In the
 field survey, increasing elevation was associated with a decrease in soil
 fungal pathogen richness but not in foliar fungal disease symptoms.
 Elevation was primarily related to soil fungal pathogen richness through
 abiotic factors, whereas no association was found between elevation and
 foliar fungal diseases. The meta-analysis confirmed the generality of our
 field survey results: elevation was associated with a decrease in soil
 fungal pathogen richness, but it had no consistent relationship with
 foliar fungal diseases or pathogens. Thus, above- and belowground plant
 pathogen communities showed distinct elevational patterns, providing new
 insights into underlying mechanisms.
description: # Data from: Above- and belowground plant pathogens along elevational
 gradients: Patterns and potential mechanisms This repository contains
 published original data and R code. Both the original data and R code were
 divided into two parts - "Haibei-Field-Study" and
 "Meta-analysis". (i.e. four files attached in this repository
 named: 1. "Haibei_Elevation_Pathogen_Analysis.R": the R code for
 Haibei field study; 2. "HaibeiData.xlsx": the original data of
 Haibei field study; 3. "Meta_Elevation_Pathogen_Analysis.R": the
 R code for Meta-analysis; 4. "MetaData.xlsx": the original data
 of Meta-analysis.) Detailed annotations were attached in each of above
 four files # For the original data of Haibei field study: Following data
 were contained - 1\. elevation; 2\. plant community characteristics (only
 on community level); 3\. soil properties (only the first principle
 component of soil properites, Soil PCA1); 4\. environmental conditions;
 5\. foliar fungal disease (only on community level); 6\. soil fungal
 pathogen related indices (only on community level). \[for each of 30 plots
 in the experiment] # For the original data of Meta-analysis: Following
 data were contained - 1\. numbers of studies and papers; 2\. basic
 information of papers; 3\. ecological and geographical information of
 study site; 4\. ecological and geographical focuses of experimental
 design; 5\. statistical results for analysis. \[for each of 62 studies
 included in the Meta-analysis]
DOI: 10.5067/swot-gpsp-1.0
title: SWOT Level 1 Onboard Tracking Data from Global Positioning System Payload (GPSP)
DOI: 10.5067/swot-nalt-gdr-d
title: SWOT Level 2 Nadir Altimeter Geophysical Data Record with Waveforms
DOI: 10.5067/swot-rad-ogdr-d
title: SWOT Level 2 Radiometer Brightness Temperatures and Troposphere Operational Data Product
DOI: 10.5067/swot-slc-2.0
title: SWOT Level 1B High-Rate Single-look Complex Data Product
DOI: 10.15468/dl.tuus7z
title: Occurrence Download

description: A dataset containing 2371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Scymnodon ringens"
 ]
}

 The dataset includes 2371 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004131-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/swot-intf-2.0
title: SWOT Level 1B Low-Rate Interferogram Data Product
DOI: 10.5067/swot-lakeavg-2.0
title: SWOT Level 2 Lake Cycle-Averaged Data Product
DOI: 10.5067/swot-lakesp-2.0
title: SWOT Level 2 Lake Single-Pass Vector Data Product
DOI: 10.5067/swot-pixcvec-2.0
title: SWOT Level 2 Water Mask Pixel Cloud Auxiliary Data Product
DOI: 10.5067/swot-pixc-2.0
title: SWOT Level 2 Water Mask Pixel Cloud Data Product
DOI: 10.5067/swot-riversp-2.0
title: SWOT Level 2 River Single-Pass Vector Data Product
DOI: 10.5067/swot-ssh-2.0
title: SWOT Level 2 KaRIn Low Rate Sea Surface Height Data Product
DOI: 10.5067/swot-poe-2.0
title: SWOT Precise Orbit Ephemeris (POE), Version 2.0
DOI: 10.5067/swot-sos-v1
title: SWOT Sword of Science River Discharge Products Version 1
DOI: 10.5067/swtpr-ctd01
title: SWOT 2019-2020 Prelaunch Oceanography Field Campaign SIO Moored Fixed-Depth CTDs