cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28774310.v1
title: Energy Dynamics Powered by Traction and Stress Control Formation and Motion of +1/2 Topological Defects in Epithelial Cell Monolayers

description: Data provided by Pradip K. Bera, Molly McCord, Jun Zhang, and Jacob Notbohm.<br>University of Wisconsin-Madison, 2025.<br>This is a sample data set from the manuscript Energy Dynamics Powered by Traction and Stress Control Formation and Motion of +1/2 Topological Defects in Epithelial Cell Monolayers. Formatting of the data is the same as described in Saraswathibhatla, A., Galles, E. E., and Notbohm, J. Spatiotemporal force and motion in collective cell migration. Sci Data, 7:197, 2020.Briefly, a list of the files included is below:The pixel size is 0.65 microns per pixel. The time between images is 15 min.Time-lapse images of fluorescent particles (c1.tif) and cells (c2.tif), along with the stress-free reference image of the fluorescent particles (c1_ref.tif).An 8-bit image of the boundary of the cell island (domain.tif).The director field of the nematic orientation of cells computed using OrientationJ/ImageJ is provided (Nematic_Orientations.csv).Other data files are in Matlab format; for cell displacements (DIC_results_c2.mat; divide by the time between images, 15 min, to convert to velocity), cell-induced substrate deformations (DIC_results_c1.mat), tractions (displ_tractions.mat), and stresses (stresses.mat).The code to compute traction and stresses is available from https://github.com/jknotbohm/Cell-Traction-Stress. The ExperimentalSettings.txt file is used to run our code.A list of located +1/2 defects in this island is provided (plus_half_Defects.xlsx), where their frame of appearence, head centre co-ordinates, and the direction of motion are mentioned.
DOI: 10.6084/m9.figshare.28774310.v2
title: Traction and stress control formation and motion of +1/2 topological defects in epithelial cell monolayers

description: Data provided by Pradip K. Bera, Molly McCord, Jun Zhang, and Jacob Notbohm.<br>University of Wisconsin-Madison, 2025.<br>This is a sample data set from the manuscript Traction and stress control formation and motion of +1/2 topological defects in epithelial cell monolayers. Formatting of the data is the same as described in Saraswathibhatla, A., Galles, E. E., and Notbohm, J. Spatiotemporal force and motion in collective cell migration. Sci Data, 7:197, 2020.Briefly, a list of the files included is below:The pixel size is 0.65 microns per pixel. The time between images is 15 min.Time-lapse images of fluorescent particles (c1.tif) and cells (c2.tif), along with the stress-free reference image of the fluorescent particles (c1_ref.tif).An 8-bit image of the boundary of the cell island (domain.tif).The director field of the nematic orientation of cells computed using OrientationJ/ImageJ is provided (Nematic_Orientations.csv).Other data files are in Matlab format; for cell displacements (DIC_results_c2.mat; divide by the time between images, 15 min, to convert to velocity), cell-induced substrate deformations (DIC_results_c1.mat), tractions (displ_tractions.mat), and stresses (stresses.mat).The code to compute traction and stresses is available from https://github.com/jknotbohm/Cell-Traction-Stress. The ExperimentalSettings.txt file is used to run our code.A list of located +1/2 defects in this island is provided (plus_half_Defects.xlsx), where their frame of appearence, head centre co-ordinates, and the direction of motion are mentioned.
DOI: 10.15468/dl.t8u3dy
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Cinchona calisaya"
 ]
}

 The dataset includes 196 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043814-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkj7cy
title: Occurrence Download

description: A dataset containing 658227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mibora verna, Mibora verna desvauxii, Mibora verna desvauxii, Mibora verna elongata, Poa minima, Poa minima, Sturmia minima, Sturmia verna, Molinia caerulea, Aira atrovirens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 658227 records from 1440 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043772-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttsr99
title: Occurrence Download

description: A dataset containing 75005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lolliguncula"
 ]
}

 The dataset includes 75005 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043766-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu4e4n
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera tigris altaica Temminck, 1844"
 ]
}

 The dataset includes 257 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000718-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/cw6e-v950
title: California Cooperative Oceanic Fisheries Investigations (CalCOFI) hydrographic, CTD, and zooplankton data 1949-2010 (NCEI Accession 0069123)

description: This dataset contains the California Cooperative Oceanic Fisheries Investigations (CalCOFI) database of hydrographic, CTD, and zooplankton data, from 1949 to 2010. The database includes CTD data, a Hydrographic database, bottle data in IEH format, and zooplankton primary productivity reports.
DOI: 10.5281/zenodo.15553591
title: Data and code for The Nesting Ecology of Southern Two-lined Salamanders (Eurycea cirrigera) in Urban Streams

description: Code and data for "The Nesting Ecology of Southern Two-lined Salamanders (Eurycea cirrigera) in Urban Streams" by Rittenburg et al. The repository includes three CSV files with raw data and R code for all analyses.
DOI: 10.5281/zenodo.15553592
title: Data and code for The Nesting Ecology of Southern Two-lined Salamanders (Eurycea cirrigera) in Urban Streams

description: Code and data for "The Nesting Ecology of Southern Two-lined Salamanders (Eurycea cirrigera) in Urban Streams" by Rittenburg et al. The repository includes three CSV files with raw data and R code for all analyses.
DOI: 10.5281/zenodo.15553497
title: TABLE 1 in Taxonomy of Triportheus (Ostariophysi: Triportheidae) from the Paraná-Paraguai basin, South America

description: TABLE 1 | Morphometric data of Triportheus claudiae. N = Number of individuals; Min-Max = Minimum and maximum; SD = Standard deviation.
HolotypeParatypesNon-typesNMin-MaxMeanSDNMin-MaxMeanSDStandard length (mm)102.62337.9–99.763.7–1532.4–96.164.5–Percents of standard lengthBody depth38.02332.8–39.635.91.91533.8–38.636.11.6Head length23.42323.6–30.526.01.81521.6–30.125.91.9Head depth21.32320.3–26.923.71.71520.6–27.623.91.7Predorsal distance63.12359.6–64.361.81.41558.0–66.062.41.8Preventral distance56.12253.7–59.756.61.81552.4–57.654.81.4Preanal distance74.12369.7–77.073.52.01570.8–74.572.11.1Caudal peduncle height10.9237.8–10.79.30.8156.5–10.38.71.1Dorsal-fin base length10.5239.6–12.311.10.7159.8–13.310.91.1Anal-fin base length27.52325.7–31.629.01.21524.3–30.127.71.9Pectoral-fin length37.02336.8–43.239.81.71537.1–41.739.41.4Pelvic-fin length14.72211.3–17.613.91.61511.8–14.112.90.9Dorsal-fin length18.12317.5–22.920.31.41516.0–21.818.91.8Anal-fin length11.1238.5–14.111.71.6158.6–12.710.71.4Caudal peduncle length9.9237.8–10.79.00.8158.2–10.19.00.6Dorsal-fin to adipose-fin distance27.12325.2–28.126.41.01526.0–30.027.61.3Orbit to dorsal-fin distance52.72345.8–52.949.41.91546.4–51.849.61.8Dorsal-fin to caudal peduncle distance41.22336.0–41.539.21.41537.5–43.939.72.0Percents of head lengthOrbital diameter28.62329.2–34.631.51.71527.9–31.829.61.5Snout length27.12321.8–26.223.91.01522.4–27.624.51.5Interorbital distance30.82326.4–32.630.01.81529.0–33.031.31.2Upper jaw length25.52321–26.624.01.91520.5–26.623.61.9
description: Published as part of Lopes, Douglas Alves & Carvalho, Fernando Rogério, 2024, Neotropical Ichthyology 22 (2) on page e 230121, DOI: 10.1590/1982-0224-2023-0121, http://zenodo.org/record/15553496
DOI: 10.15468/dl.casqge
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dolichopteroides binocularis (Beebe, 1932)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 -7.1504,26.9648 -7.1504,26.9648 -16.1504,35.9648 -16.1504,35.9648 -7.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008757-250525065834625/datasets/export for details.
DOI: 10.15468/dl.x4x55m
title: Occurrence Download

description: A dataset containing 799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arenaria serpyllifolia, Arenaria serpyllifolia, Arenaria serpyllifolia, Arenaria serpyllifolia)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 799 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015156-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.446thc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphotyphlops braminus",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015157-260108223611665/datasets/export for details.
DOI: 10.5683/sp3/aei3vm
title: Burning the candle at both ends: two sympatric thrushes are equally detectable and sing at similar rates at dawn and dusk

description: Many birds sing prolifically during the dawn chorus and a subset of these species also sing at dusk. How vocal activity varies between these two periods has not been examined in many species. In this study, we explored rates of detection and song rate of two sympatric passerines, Hermit (Catharus guttatus) and Swainson’s (Catharus ustulatus) thrushes, at dawn and dusk. At three intervals in the breeding season, we examined eight 1-min intervals from 60-min before to 60-min after both sunrise and sunset. We recorded whether each species was detected, the total number of songs sung, and the number of individuals singing. We found that both Hermit and Swainson’s thrushes were equally likely to be detected at all time periods except that Hermit Thrush singing was reduced and Swainson’s Thrush song was absent 60-min after sunset. We also detected both species singing less often earlier in the season. We found that song rate was not strongly related to either time of day or time of season, but the song rate/individual detected was higher for Hermit Thrush when more individuals were singing. Our results suggest that the dusk chorus ceases at a higher light level than the dawn chorus starts and that neighbors’ singing may increase the song rate. Our study adds to our general understanding of the daily and seasonal singing phenology of Hermit and Swainson’s thrushes and suggests breeding bird surveys for these two species could occur in both morning and evening with equal likelihood of detection.
description: Updated citation metadata.
DOI: 10.6084/m9.figshare.30837428
title: Thematic Analysis

description: thematic analysis
DOI: 10.6084/m9.figshare.30837428.v1
title: Thematic Analysis

description: thematic analysis
DOI: 10.6084/m9.figshare.30837428.v2
title: Thematic Analysis

description: thematic analysis
DOI: 10.15468/dl.fpaxbb
title: Occurrence Download

description: A dataset containing 36711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Notemigonus crysoleucas",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36711 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015158-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fc5ven
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphotyphlops braminus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 223 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015160-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4h2vr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphotyphlops braminus",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015161-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18271423
title: Cyperus meyenianus Kunth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.5281/zenodo.18271422
title: Cyperus meyenianus Kunth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:45
DOI: 10.14288/1.0451237
title: Dissolved and Particulate PBDE Concentrations in the Strait of Georgia, Juan de Fuca Strait, Burrard Inlet and the Fraser River (2013-2018)

description: Fifty-five filtered seawater and twenty-one suspended particles samples were collected in the Strait of Georgia and surrounding areas on multiple research cruises between 2013 and 2018. The samples were processed within 48 hrs after collection and sent to SGS AXYS Analytical Services Ltd. (Sidney, B.C., Canada) to measure PBDEs. The dataset includes the dissolved and particulate concentration (pg/kg and pg/L, respectively) of 40 PBDE congeners in each sample, the weight of water (kg) from which dissolved PBDEs were extracted or the volume of water (L) filtered to collect the suspended particles, and mass of congeners in the analytical and procedural blanks. The limits of detection and quantification were determined from the standard deviations of the analytical blanks (3 and 10 standard deviations, respectively). The reported congener concentrations have been blank-corrected. The mass of congeners found to be below their limit of detection or quantification are reported as ranges (0 - LoD, or LoD - LoQ, respectively).
DOI: 10.15468/dl.535tcp
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 140 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015163-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7v65p
title: Occurrence Download

description: A dataset containing 28458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus parvifolius"
 ]
}

 The dataset includes 28458 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015162-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9tn98
title: Occurrence Download

description: A dataset containing 2721 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Soliva anthemifolia"
 ]
}

 The dataset includes 2721 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015164-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkcfbz
title: Occurrence Download

description: A dataset containing 19426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Notropis atherinoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19426 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015165-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bp7bw
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Armeria maritima, Armeria maritima, Armeria maritima, Armeria maritima)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 146 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015166-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygcz5j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pantherophis alleghaniensis",
 "Country is Saint Kitts and Nevis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015168-260108223611665/datasets/export for details.
DOI: 10.15468/dl.qq5533
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pantherophis alleghaniensis",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015167-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9rjga
title: Occurrence Download

description: A dataset containing 4839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arnica montana, Arnica montana)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 4839 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015170-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sd74sc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Balaenoptera musculus [GBIF Backbone Taxonomy])",
 "Country is one of (Canada, France)",
 "StateProvince is one of (Newfoundland, Newfoundland and Labrador (Prov.), Newfoundland and Labrador)",
 "EventDate 2016-06-01-2025-09-30"
 ]
 }
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015169-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tw2dh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthriophis taeniurus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015171-260108223611665/datasets/export for details.
DOI: 10.15468/dl.k73fwa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthriophis taeniurus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015172-260108223611665/datasets/export for details.
DOI: 10.15468/dl.q9r4w9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthriophis taeniurus",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015173-260108223611665/datasets/export for details.