cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/0142-7561
title: Multi-channel Near Infrared Tof Response Images of Five Materials

description: Conventionally, the texture of the object is used for material imaging. However, this method can mistake an image of an object, tothe object itself. This dataset furthers a new and more relevant method to classify the material of an object. This data is richer, compared to RGB images, because the time of flight responses correlate with the material property of an object. This makes the features, thus extracted, more suitable to infer the material information. It provides near-infrared Time of Flight response images of objects from 10 different distances ranging from 40cm to 60cm and at 7 different orientations ranging from -30 degrees to + 30 degrees. This dataset contains images of five different objects, where each image contains only one object, and each object is made of unique materials. The five materials are Melamine Panel, Polystyrene, Bubble Wrap, Paper and Wax. The images are acquired using a Photonic Mixer Device (PMD) Selene module. PMD Selene module is a low-power multifrequency time of flight camera. The images are acquired in a near-dark room to avoid the ambient light interference.
DOI: 10.5281/zenodo.6382440
title: The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication

description: The distribution of recombination events along large cereal chromosomes is uneven and generally restricted to gene-rich telomeric ends. In order to understand how the lack of recombination affects diversity in the large pericentromeric regions, we assembled and analysed deep exome capture data from a panel of 879 cultivars, landraces, and wild barleys, sampled from across their eco-geographical ranges. We defined and compared variant data across the pericentromeric and non-pericentromeric regions, observing a clear partitioning of diversity both within and between chromosomes and germplasm groups. Dramatically reduced diversity was found in the pericentromeres of both cultivars and landraces when compared to wild barley. We observed a mixture of completely and partially differentiated SNPs between domesticated and wild genepools, suggesting the former were derived from multiple wild ancestors. Patterns of genome-wide linkage disequilibrium, haplotype block size and number, and variant frequency within blocks showed clear contrasts among individual chromosomes and between cultivars and wild barleys. While most cultivar chromosomes shared a single major pericentromeric haplotype, chromosome 7H clearly differentiated 2-row and 6-row types associated with different geographical origins. Within the pericentromeric regions we identified 22,387 non-synonymous SNPs, of which 92 were fixed for alternative alleles in cultivar versus wild accessions. Surprisingly, only 29 SNPs found exclusively in the cultivars were predicted to be ‘highly deleterious’. GO terms associated with the pericentromeric regions revealed housekeeping genes to be over-represented. Overall, our data reveal an unconventional pericentromeric genetic landscape among distinct barley gene pools with different evolutionary processes driving domestication and diversification.
description: Funding & Acknowledgements: This was a collaborative study and funded from the following granting bodies: ERC project 669182 'SHUFFLE' (YYC, MS, RW); European Union's Seventh Frame-work Programme (FP7/2007-2013) under the grant agreement no.FP7-613556, WHEALBI (JRR & IKD); Scottish Government Rural and Environment Science and Analytical Services (RESAS)(JRR, RW, MMB, PEH); USDA-NIFA Triticeae Coordinated Agricultural Project 2011-68002-30029 (GM, LL, AA, CL & BJS) and National Science Foundation (Grant IOS-1339393), the Minnesota Agricultural Experiment Station Variety Development fund (KPS, JCF & PLM). The authors would like to thank Professor Nils Stein and colleagues at Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben.
DOI: 10.5281/zenodo.6382439
title: The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication

description: The distribution of recombination events along large cereal chromosomes is uneven and generally restricted to gene-rich telomeric ends. In order to understand how the lack of recombination affects diversity in the large pericentromeric regions, we assembled and analysed deep exome capture data from a panel of 879 cultivars, landraces, and wild barleys, sampled from across their eco-geographical ranges. We defined and compared variant data across the pericentromeric and non-pericentromeric regions, observing a clear partitioning of diversity both within and between chromosomes and germplasm groups. Dramatically reduced diversity was found in the pericentromeres of both cultivars and landraces when compared to wild barley. We observed a mixture of completely and partially differentiated SNPs between domesticated and wild genepools, suggesting the former were derived from multiple wild ancestors. Patterns of genome-wide linkage disequilibrium, haplotype block size and number, and variant frequency within blocks showed clear contrasts among individual chromosomes and between cultivars and wild barleys. While most cultivar chromosomes shared a single major pericentromeric haplotype, chromosome 7H clearly differentiated 2-row and 6-row types associated with different geographical origins. Within the pericentromeric regions we identified 22,387 non-synonymous SNPs, of which 92 were fixed for alternative alleles in cultivar versus wild accessions. Surprisingly, only 29 SNPs found exclusively in the cultivars were predicted to be ‘highly deleterious’. GO terms associated with the pericentromeric regions revealed housekeeping genes to be over-represented. Overall, our data reveal an unconventional pericentromeric genetic landscape among distinct barley gene pools with different evolutionary processes driving domestication and diversification.
description: Funding & Acknowledgements: This was a collaborative study and funded from the following granting bodies: ERC project 669182 'SHUFFLE' (YYC, MS, RW); European Union's Seventh Frame-work Programme (FP7/2007-2013) under the grant agreement no.FP7-613556, WHEALBI (JRR & IKD); Scottish Government Rural and Environment Science and Analytical Services (RESAS)(JRR, RW, MMB, PEH); USDA-NIFA Triticeae Coordinated Agricultural Project 2011-68002-30029 (GM, LL, AA, CL & BJS) and National Science Foundation (Grant IOS-1339393), the Minnesota Agricultural Experiment Station Variety Development fund (KPS, JCF & PLM). The authors would like to thank Professor Nils Stein and colleagues at Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben.
DOI: 10.5281/zenodo.6646941
title: Data from: Land use, season, and parasitism predict metal concentrations in Australian flying fox fur

description: There are two .csv files in this upload. The "Pteropus_metal_data_wide.csv" file contains metal concentrations (reported in ng/g) measured in fur samples collected from <em>Pteropus </em>flying foxes (<em>P. alecto</em>, <em>P. conspicillatus</em>, <em>P. poliocephalus</em>). Flying foxes were captured from 2015-2018 at multiple sites across Australia. The file also contains capture information (e.g. date, location) and biological information (e.g. species, sex, age class, parasitism) for each flying fox. The "Pteropus_metadata.csv" file provides further details on all column names in the primary data file, including the specific metals that were quantified. Detailed information on the study methods and results can be found in the associated Science of the Total Environment publication, "Land use, season, and parasitism predict metal concentrations in Australian flying fox fur" by Sánchez et al.
DOI: 10.5281/zenodo.6646940
title: Data from: Land use, season, and parasitism predict metal concentrations in Australian flying fox fur

description: There are two .csv files in this upload. The "Pteropus_metal_data_wide.csv" file contains metal concentrations (reported in ng/g) measured in fur samples collected from <em>Pteropus </em>flying foxes (<em>P. alecto</em>, <em>P. conspicillatus</em>, <em>P. poliocephalus</em>). Flying foxes were captured from 2015-2018 at multiple sites across Australia. The file also contains capture information (e.g. date, location) and biological information (e.g. species, sex, age class, parasitism) for each flying fox. The "Pteropus_metadata.csv" file provides further details on all column names in the primary data file, including the specific metals that were quantified. Detailed information on the study methods and results can be found in the associated Science of the Total Environment publication, "Land use, season, and parasitism predict metal concentrations in Australian flying fox fur" by Sánchez et al.
DOI: 10.21227/3rvt-qd18
title: Dialogue corpus for explanation request in a customer-care chatbot service

description: The dialogue corpus is  described in the paper "Anticipating User Intentions in Customer Care Dialogue Systems" and contains a selection of human-chatbot Italian dialogues concerning customer-care requests.In order to preserve the privacy and company data property, we removed the actual sentences and we present only the annotation described in the paper.
DOI: 10.48544/759319f1-125c-4fb3-9a64-2755ebea04cb
title: Verkenning van subsidiekansen voor het Kenniscentrum Duurzaam Organiseren Hogeschool Leiden
DOI: 10.6084/m9.figshare.20080473
title: Additional file 1 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 1: The Home Healthcare Nurses' Job Satisfaction Scale: HHNJS.
DOI: 10.6084/m9.figshare.20080473.v1
title: Additional file 1 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 1: The Home Healthcare Nurses' Job Satisfaction Scale: HHNJS.
DOI: 10.6084/m9.figshare.20080476
title: Additional file 2 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 2: Item analysis and exploratory factor analysis of 30 items (same as original HHNJS Scale) Japanese version exploration.
DOI: 10.6084/m9.figshare.20080476.v1
title: Additional file 2 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 2: Item analysis and exploratory factor analysis of 30 items (same as original HHNJS Scale) Japanese version exploration.
DOI: 10.6084/m9.figshare.20080479
title: Additional file 3 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 3: Table S1. Results of confirmatory factor analysis: comparison of several indices from Models 1 to 4 (n = 409)
DOI: 10.6084/m9.figshare.20080479.v1
title: Additional file 3 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 3: Table S1. Results of confirmatory factor analysis: comparison of several indices from Models 1 to 4 (n = 409)
DOI: 10.6084/m9.figshare.20080482
title: Additional file 4 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 4: Table S2. Pearson’s correlation coefficients between the satisfaction in Japanese Nurses' questionnaire and the total and factor Scores of the HHNJS-J: Model 4 (n = 409)
DOI: 10.6084/m9.figshare.20080482.v1
title: Additional file 4 of The development and validation of the Japanese version of job satisfaction scale: a cross-sectional study on home healthcare nurses

description: Additional file 4: Table S2. Pearson’s correlation coefficients between the satisfaction in Japanese Nurses' questionnaire and the total and factor Scores of the HHNJS-J: Model 4 (n = 409)
DOI: 10.5281/zenodo.6653120
title: Data for Figures and Tables in "Bounce backs amid continued losses: Life expectancy changes since COVID-19"

description: <strong>Data for Figures and Tables in "Bounce backs amid continued losses: Life expectancy changes since COVID-19"</strong> <em>cc-by Jonas Schöley, José Manuel Aburto, Ilya Kashnitsky, Maxi S. Kniffka, Luyin Zhang, Hannaliis Jaadla, Jennifer B. Dowd, and Ridhi Kashyap. "Bounce backs amid continued losses: Life expectancy changes since COVID-19".</em> These are CSV files of data in the figures and tables published in the paper "Bounce backs amid continued losses: Life expectancy changes since COVID-19". <strong>50-e0diffT.csv</strong> Figure 1: Life expectancy changes 2019/20 and 2020/21 across countries. The countries are ordered by increasing cumulative life expectancy losses since 2019. Grey dots indicate the average annual LE changes over the years 2015 through 2019. <strong>51-arriagaT.csv</strong> Figure 2: Age contributions to life expectancy changes since 2019 separated for 2020 and 2021. The position of the arrowhead indicates the total contribution of mortality changes in a given age group to the change in life expectancy at birth since 2019. The discontinuity in the arrow indicates those contributions separately for the years 2020 and 2021. Annual contributions can compound or reverse. The total life expectancy change from 2019 to 2021 in a given country is the sum of the arrowhead positions across age. <strong>52-sexdiff.csv</strong> Figure 3: Change in the female life expectancy advantage from 2019 through 2021. Blue colors indicate an increase and red colors a decrease in the female life expectancy advantage. Muted colors indicate non-significant changes. <strong>53-e0diffcodT.csv</strong> Figure 4: Life expectancy deficit in 2021 decomposed into contributions by age and cause of death. LE deficit is defined as observed minus expected life expectancy had pre-pandemic mortality trends continued. <strong>55-vaxe0.csv</strong> Figure 5: Years of life expectancy deficit during October through December 2021 contributed by ages &lt;60 and 60+ against % of population twice vaccinated by October 1st in the respective age groups. LE deficit is defined as the counterfactual LE from a Lee-Carter mortality forecast based on death rates for the fourth quarter of the years 2015 to 2019 minus observed LE. <strong>54-tab_arriaga.csv</strong> Table 1: Months of life expectancy (LE) changes and deficits (labelled ES) since the start of the pandemic attributed to age-specific mortality changes (labelled AT). LE deficit is defined as observed minus expected life expectancy had pre-pandemic mortality trends continued.
DOI: 10.5281/zenodo.5702609
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 18

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 18 contains stitched image montages of a thin section through the lung of patient C08 which were acquired by scanning electron microscopy. The file “Data_set_18.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5702608
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 18

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 18 contains stitched image montages of a thin section through the lung of patient C08 which were acquired by scanning electron microscopy. The file “Data_set_18.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5702550
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 17

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 17 contains stitched image montages of a thin section through the lung of patient C07 which were acquired by scanning electron microscopy. The file “Data_set_17.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5702549
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 17

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 17 contains stitched image montages of a thin section through the lung of patient C07 which were acquired by scanning electron microscopy. The file “Data_set_17.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5702444
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 16

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 16 contains stitched image montages of a thin section through the lung of patient C06 which were acquired by scanning electron microscopy. The file “Data_set_16.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5702443
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 16

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 16 contains stitched image montages of a thin section through the lung of patient C06 which were acquired by scanning electron microscopy. The file “Data_set_16.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5683122
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 15

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 15 contains stitched image montages of a thin section through the lung of patient C05 which were acquired by scanning electron microscopy. The file “Data_set_15.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5683121
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 15

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 15 contains stitched image montages of a thin section through the lung of patient C05 which were acquired by scanning electron microscopy. The file “Data_set_15.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5517/ccdc.csd.cc2c24h3
title: CCDC 2176804: Experimental Crystal Structure Determination

description: Related Article: W. Guerrab, A. El Moutaouakil Ala Allah, A. Alsubari, J.T. Mague, Y. Ramli|2022|IUCrData|7|x220598|doi:10.1107/S2414314622005983
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.5683073
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 14

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 14 contains stitched image montages of a thin section through the lung of patient C04 which were acquired by scanning electron microscopy. The file “Data_set_14.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.
DOI: 10.5281/zenodo.5683072
title: A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 14

description: We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 doi.org/10.1007/s00428-020-02934-1) by using thin section electron microscopy (Cortese et al. 2022 doi.org/10.1007/s00428-022-03308-5). A detailed description of the methods and the data set is provided in the download container. Data set 14 contains stitched image montages of a thin section through the lung of patient C04 which were acquired by scanning electron microscopy. The file “Data_set_14.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.