cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14414114.v1
title: Supplementary Material for: Fecal Lactoferrin Predicts Primary Nonresponse to Biologic Agents in Inflammatory Bowel Disease

description: <b><i>Introduction:</i></b> Fecal lactoferrin (FL) is a timely and accurate marker of inflammation in ulcerative colitis (UC) and Crohn’s disease (CD). The aim of this study was to verify whether FL can predict primary nonresponse (PNR) to biologic agents during induction. <b><i>Methods:</i></b> Retrospective outcome review in 27 patients (13 with CD and 14 with UC) tested for baseline FL and retested within a week after the first and second induction doses. Clinical/biochemical outcomes were evaluated at end of induction and at follow-up (3–24 months). <b><i>Results:</i></b> Compared to baseline, changes of the Harvey-Bradshaw (CD) and Partial Mayo Scoring (UC) indices at end of induction separated responders (18/27 or 67%) from nonresponders (9/17 or 33%). In all patients, the initial FL value at induction decreased compared to baseline, continuing to decrease after the following dose in clinical responders while bouncing back in the others. Models targeting the 2 consecutively decreased FL values or the second FL value compared to baseline or the second FL value compared to the first were able to accurately predict response at end of induction. Follow-up assessment confirmed clinical remission in initial responders (with FL values reduced on the average by 94 ± 10% compared to baseline). <b><i>Conclusions:</i></b> In CD and UC patients during induction with biologic agents, early FL measurements accurately separate clinical responders from those experiencing PNR. The method described here offers several potential advantages over other strategies to assess and manage these patients.
DOI: 10.6084/m9.figshare.28137164.v5
title: PIS

description: Background: The human ear is unique to individuals, and ear prints, like fingerprints, are discrete enough to distinguish identical twins. Therefore, the external ear could be used to identify both living and deceased individuals. Therefore, this study aimed to evaluate the stature and sexual dimorphism of the external ear using various morphometric parameters and morphological features for forensic identification.Methods: This study included 40 participants. Various measurements were taken and the morphological features of both the right and left ears were noted. The results were statistically analyzed.Results: In males and females, the most common shape was oval, and the ear lobe was free. The most common shape of the ear lobe in males was arched, while in females, it was triangular. In males and females, the most common form of the helix was the concave marginal. In males, the most common shape of the tragus was round, whereas in females, it was long. In males and females, the most common shape of Darwin’s tubercle was enlarged. It was seen that the right lobe width showed perfect separation, indicating its potential as an extremely reliable predictor. It was noted that in females, the strongest correlation with height was with the ear inclination angle on both sides.Conclusion: The results of this study can help forensic anthropologists identify the sex and stature of a person from various ear measurements.
DOI: 10.6084/m9.figshare.5862354.v1
title: Non-destructive ultrasonic tomography for concrete pavement evaluation: signal processing and image analysis of crucial parameters

description: Abstract In recent years, due to the destructive and unproductive character of pavement specimen extraction, pavement maintenance technology intensified the use of non-destructive techniques for pavement evaluation which resulted in the development of several devices and evaluation methods. This paper describes the use of technology based on low frequency ultrasonic tomography for evaluation of concrete pavement parameters. The equipment was applied in three experimental sections with different concrete pavements built at the University of Sao Paulo campus. The ultrasonic signal processing is given. The results analysis enables the efficient and reliable identification of thickness and reinforcement position within the concrete slab. Construction problems were evidenced in one of experimental sections with thickness deficiencies and reinforcement in a position below projected. Furthermore, the use of a novel concrete quality indicator was correlated with the presence of transverse cracks and alkali-silica reaction within the sections.
DOI: 10.6084/m9.figshare.12058065.v7
title: Solar wind in situ data suitable for machine learning (python numpy structured arrays): STEREO-A/B, Wind, Parker Solar Probe, Ulysses, Venus Express, MESSENGER

description: These are solar wind in situ data arrays in python pickle format suitable for machine learning, i.e. the arrays consist only of numbers, no strings and no datetime objects.<br><br>See AAREADME_insitu_ML.txt for more explanation.<br>If you use these data for peer reviewed scientific publications, please get in touch concerning usage and possible co-authorship by the authors (C. Möstl, A. J. Weiss, R. L. Bailey, R. Winslow, A. Isavnin, D. Stansby): christian.moestl@oeaw.ac.at or twitter @chrisoutofspace <br>Made with https://github.com/cmoestl/heliocats <br><br>Load in python with e.g. for Parker Solar Probe data:<br>&gt; import pickle&gt; filepsp='psp_2018_2019_sceq_ndarray.p'&gt; [psp,hpsp]=pickle.load(open(filepsp, "rb" ) ) <br>plot time vs total field&gt; import matplotlib.pyplot as plt&gt; plt.plot(psp['time'],psp['bt'])<br><br>Times psp[:,0 ] or psp['time'] are in matplotlib format. Variable 'hpsp' contains a header with the variable names and units for each column. Coordinate systems for magnetic field components are RTN (Ulysses), SCEQ (Parker Solar Probe, STEREO-A/B, VEX, MESSENGER), HEEQ (Wind)<br>available parameters:<br>bt = total magnetic fieldbxyz = magnetic field componentsvt = total proton speedvxyz = velocity components (only for PSP)np = proton densitytp = proton temperaturexyz = spacecraft position in HEEQr, lat, lon = spherical coordinates of position in HEEQ<br><br><br><br>
DOI: 10.6084/m9.figshare.1287792.v2
title: Survey of human-wildlife conflict, resource use and attitudes towards conservation and sustainable development in the Kanuku Mountains, Rupununi, Guyana

description: Raw data, metadata and summaries from surveys of human-wildlife conflict, subsistence and commercial resource use, attitudes towards wildlife, research and conservation, knowledge of regional wildlife, agricultural and livestock management practices, regional demographics and regional social issues in six indigenous communities surrounding the Kanuku Mountains, Guyana.
DOI: 10.6084/m9.figshare.25323826.v2
title: Indoorgml datasets and their corresponding point clouds

description: These point clouds have been used for ISPRS funded project "Integrating IndoorGML with outdoors: Automatic routing graph generation for indoor‐outdoor transitional space for seamless navigation"!
DOI: 10.6084/m9.figshare.25686039.v1
title: <b>Long-term soil warming changes the profile of primary metabolites in fine roots of Norway Spruce in a temperate montane forest</b>

description: This file contains Supplementary Metadata and R code for the publication "Long-term soil warming alters the profile of primary metabolites in fine roots of Norway Spruce in a temperate montane forest" in Plant, Cell & Environment
DOI: 10.17632/chwhh9n3bf
title: Vibration Data for Axial Ball Bearings and Spall Faults

description: The datasets involve vibration measurements for axial ball bearings in healthy and faulty conditions. The faulty conditions are for artificially-seeded spall defects at the outer and the inner races. There are 28 datasets in two groups. The first group is for a fault-free condition and it consists of four datasets. The second group involves 24 datasets for six levels of fault-sizes and four loading groups. The file is a standard MATLAB data file ".mat". The file name for each dataset follows the following format: (NX_R_S_T.mat), where X indicates the applied axial load in kN, R is the spindle speed in revolutions per minute, S is the spall fault width in millimeters and T is the spall location on the outer or the inner races. Each dataset has a single time series for the axial vibration from an accelerometer mounted on the bearing outer race (radial axis).  Both of the spindle speed and the axial load are time invariant within the dataset. All datasets are sampled at 25.6 kHz for a duration of 30 seconds.
DOI: 10.6084/m9.figshare.1226519.v1
title: Insect Species Diversity Across Different Types of Vegetation

description: Hypothesis Species diversity in the area vegetation is present is higher than area where vegetation is absent due to the abundant vegetation. Four students set out to grassland site at York university keele campus at 2:30 pm. Two areas in the grassland site were chosen to execute the experiment. One area where vegetation was present (area 1) had a high abundance of vegetation; the area was covered with tall and bushy plants highly disturbed grassland area. The second area where vegetation was absent (area 2) there were no tall plants and mainly comprised of flattened grass. In area 2 the students made sure that if there were any tall grass surrounding the pan traps it would be removed by hand or a shovel. Two line transects were laid out 18m across the areas and 9 pan traps of different colors were placed along the transect in a straight line line leaving 2m between each pan. The pan traps colors were 3 blue, 3 yellow, and 3 white these were placed in alternating colors in order to attract different types of insects. The pans were half filled with soapy water in order to catch the insects and the soaps purpose was to cut the surface tension in order for the insect to drown instantly. The pan traps were left undisturbed for two and a half hours. For each pan trap the students counted the number of insects captured in each pan and the record the number of different recognizable taxonomic units (rtus). A replicate was performed the following week at the same time. The weather conditions were different for both days. On the first day of collecting data it was windy and rainy, the following week the weather was partially cloudy and sunny no wind, puddles were present in both sites.
DOI: 10.6084/m9.figshare.14899077.v1
title: Feline behavior and personality survey data

description: Dataset used in the article "Reliability and Validity of Seven Feline Behavior and Personality Traits" by Salla Mikkola, Milla Salonen, Emma Hakanen, Sini Sulkama, and Hannes Lohi
DOI: 10.6084/m9.figshare.17032397.v1
title: Supplementary Material for: Amphetamine-Type Stimulant Dependence and Association with Concurrent Use of Cocaine, Alcohol, and Cannabis: A Cross-Sectional Study

description: <b><i>Introduction:</i></b> Amphetamine-type stimulants (ATSs) are the second most commonly used class of illegal substances in Europe. Although concurrent substance use has been subject to research, little is known about associations between concurrent use of cocaine, alcohol, or cannabis and ATS dependence. We expect that the concurrent use of any of the substance, especially cannabis and cocaine, is associated with ATS dependence. <b><i>Methods:</i></b> Cross-sectional data were gathered within the European ATTUNE study in 2018/2019. Participants (<i>N</i> = 721) were asked about their consumption patterns and social, psychological, and economic situation. Multivariate logistic regressions were carried out for associations between ATS dependence and use combinations of frequent cocaine, alcohol, or cannabis, with the reference group of no frequent concurrent use (model 1). Model 2 calculated associations for ATS dependence with lifetime methamphetamine use for respective use combinations. <b><i>Results:</i></b> The study population was on average 28.9 years old (SD = 7.7), with the majority being male (63.5%). In model 1, the adjusted odds ratio (aOR) for frequent alcohol use was 0.70 (confidence interval [CI] 0.41–1.20). Similar results were shown for model 2 (aOR 0.82, CI 0.42–1.62). Frequent cannabis use significantly reduced the chance for ATS dependence by 50% in adjusted model 1 (aOR 0.50, CI 0.28–0.89) and by 62% in model 2 (aOR 0.38, CI 0.18–0.82). For frequent cocaine use, models 1 and 2 report an aOR at 1.37 (CI 0.58–3.25) and 2.39 (CI 0.77–7.43), although not statistically significant. Frequent users of all 3 substances had a significant 3-fold chance for ATS dependence (model 1: aOR 2.98, CI 1.16–7.63; model 2: aOR 2.95, CI 1.02–8.58). <b><i>Discussion:</i></b> Against initial hypotheses, frequent concurrent use of alcohol or cannabis generally decreased chances for ATS dependence. An explanation could be the study population, which consists of many irregular users of ATS, who mainly consume alcohol or cannabis. Cocaine generally increased chances, although results were not significant. The frequent use of all 3 substances together with ATS in the last year was significantly associated with dependence, thus reporting important information for treatment services. Further research is needed for disentangling causal relationships underlying these associations and for pinpointing consequences for relapse prevention and retention success.
DOI: 10.6084/m9.figshare.24924279.v1
title: Supplementary Material for: Analysis of burnout prevalence among German physicians working in a palliative care setting – a survey of the AIO quality of life working group

description: Introduction: Palliative care physicians (pcps) face special challenges caring for terminally ill patients. We conducted this study to evaluate the burnout (bo) prevalence among pcps and sought to identify risk as well as protective factors as a basis for the development of preventive measures.
Methods: Participants (Pcs) were invited via e-mail to complete an online survey between May and June 2022. Besides the Oldenburg Burnout Inventory assessing the bo dimensions exhaustion (exh) and disengagement (dis), sociodemographic data were collected.
Results: The study found that 58% (cut-off mean value (M)≥2.18) or more specifically 38% (cut-off M≥2.5) of the pcs showed increased scores in the exh subscale as a key dimension of bo. All dimensions correlated with the level of medical and palliative care training, with higher scores for physicians in training. Furthermore, pcs without preventive measures like employee appraisals at work were more likely to be considered exh, disengaged (dis) or burned out. The discrepancy between high exh and low dis scores shows that the polled pcps despite feeling exh nevertheless considered their work meaningful.
Conclusion: Burnout prevalence among pcps exceeds that of general population and other specialties, whereas inexperienced pcps might be at high risk of shifting from exh to bo and could therefore benefit from tailored support. Further preventive measures including individual and organizational aspects are necessary to prevent bo and promote health among medical staff, thereby preserving quality of patient care. Elementary preventive measures such as employee appraisals can have a protective effect against bo.
DOI: 10.6084/m9.figshare.28335131.v2
title: Data for 'Functional robustness declines faster than structural robustness in hyperdiverse seed dispersal networks following defaunation'

description: To understand the impacts of defaunation on the seed dispersal of Cerrado, we sampled plant-frugivore interactions in five sites and assessed seed dispersal effectiveness of each interaction. Using a network approach, we simulated frugivore extinctions and population declines to evaluate the plant community response in terms of structural (remaining plant species) and functional robustness (remaining seed dispersal effectiveness).This dataset contains 5 plant-frugivore interaction networks and a combined network joining all 5 study sites, weighted by SDE of each pair of interacting species. Furthermore, it contains 5 dataframes with values of interaction frequencies, number of seeds dispersed per visit, seed germination, seed dispersal effectiveness (SDE), animal specialization (i.e., normalized degree), animal abundance, animal body mass and fruit diameter for each pair of interacting species.We have the following worksheets in the Excel table:<b>pop_declines: </b>the joined network combining all 5 study sites, weighted by SDE values for each pair of interacting species. Columns refer to plant species and rows refer to each interaction event between a frugivore individual and a plant species.<b>network_1 - 5: </b>5 plant-frugivore interaction networks weighted by SDE values for each pair of interacting species. Columns refer to plant species and rows refer to frugivore species.<b>DF_1 - 5: </b>5 dataframes containing the variables, organized in columns:animalSp: frugivore speciesplantSp: plant speciesvis: interaction frequencies calculated following the grand total standardization method (Quintero et al., 2022) per pair of interacting speciesqtc: average number of seeds dispersed per visit per pair of interacting speciesqlc: average seed germination proportions per pair of interacting speciessde: seed dispersal effectiveness, given by the product of vis, qtc and qlc, per pair of interacting speciesn.degree: normalized degree for each frugivore species. Normalized degree is given by the number of plant species each frugivore interacts divided by the total number of plants in the network.abund_animals: frugivore relative abundances given by the number of records of each frugivore species weighted by sampling effort, divided by the total number of records weighted by sampling effort.body_mass: frugivores body mass, given by their weights in grams (g).fruit_diameter: average fruit diameter for each plant species, given in millimeters (mm).<br>Scripts simulating defaunation scenarios were adapted from Donoso et al. (2020) (doi.org/10.1038/s41467-020-15438-y) for species extinction scenarios, and from Rumeu et al. (2017) (doi.org/10.1111/1365-2435.12897) for the population decline scenario.
DOI: 10.6084/m9.figshare.24208653.v1
title: S014.zip

description: Data for S014
DOI: 10.6084/m9.figshare.28928105.v1
title: Temporal mHVSR data

description: Temporal mHVSR data for the CTON station in the BGS network + mHVSR curves for each week of 2024.
DOI: 10.6084/m9.figshare.28630382.v1
title: Dataset response sensor

description: This study tested an electronic nose device to detect the presence of fruit flies on snake fruit from the first to the fourth day after fruit fly infestation, GC-MS analysis was also conducted to confirm the mechanism of the differentiating compounds between the control and fruit fly treatments.
DOI: 10.6084/m9.figshare.29145881.v1
title: uspto_templates.csv.gz

description: aizynthfinder python package
DOI: 10.17632/m3p9m9vc4g
title: ExAgBov: a public database of annotated variations from hundreds of bovine whole-exome sequencing samples

description: ExAgBov: A public database of annotated variations from hundreds of bovine whole-exome sequencing samples

Rotem Raz1,2, Zvi Roth2 and Moran Gershoni1*

1.	Department of Ruminant Science, Institute of Animal Sciences, Agricultural Research Organization, The Volcani Center, Rishon LeZion 7505101, Israel
2.	Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot 76100, Israel.

*Corresponding author: Moran Gershoni (gmoran@volcani.agri.gov.il)

Cite this database:
Raz, R., Roth, Z. & Gershoni, M. ExAgBov: A public database of annotated variations from hundreds of bovine whole-exome sequencing samples. Sci Data 9, 469 (2022). https://doi.org/10.1038/s41597-022-01597-8


Abstract
Large reference datasets of annotated genetic variations from genome-scale sequencing are essential for interpreting identified variants, their functional impact, and their possible contribution to diseases and traits. However, to date, no such database of annotated variation from broad cattle populations is publicly available. To overcome this gap and advance bovine NGS-driven variant discovery and interpretation, we obtained and analyzed raw data deposited in the SRA public repository. Short reads from 262 whole-exome sequencing samples of Bos Taurus were mapped to the Bos Taurus ARS-UCD1.2 reference genome. The GATK best practice workflow was applied for variant calling. Comprehensive annotation of all recorded variants was done using the Ensembl Variant Effect Predictor (VEP). An in-depth analysis of the population structure revealed the breeds comprising the database. The Exomes Aggregate of Bovine- ExAgBov is a comprehensively annotated dataset of more than 20 million short variants, of which ~2% are located within open reading frames, splice regions, and UTRs, and more than 60,000 variants are predicted to be deleterious. 


The following files are available:
1. BovExAg.DB.TSV+DP.filtered = The filtered database file. includes variants that pass the quality filtration for the read quality and depth of coverage (see Raz R. et al.)
2. ExAgBov.DB.TSV.gz = The database file with all the annotated variants and the supporting information
3. ExAgBov.DP.all-var.csv.gz = The depth of coverage of all variants in all samples
4. SRA.ID+breed.csv = The SRA ID of the ExAgBov WES samples including the sample breed whenever available in the metadata
5. ExAgBov.SRA.metadata.txt = The complete metadata file of all the WES samples included in the ExAgBov database
DOI: 10.17632/mx8k5dwdgs
title: What will the corporate income tax system in Ukraine be by 2035? Delphi Method. Quantitative and qualitative data

description: This data are the result of scientific research relating to the evaluation of alternative scenarios of corporate income taxation in Ukraine by 2035, in the terms of their preferability and probability.

For this research, the Delphi method was chosen.

The results show 6 main points.
1.	The experts are fully convinced that the corporate income tax will not be abolished by 2035. However, experts are not as confident whether the corporate income tax will remain unchanged.

2. All scenarios with strong and moderate consensus are undesirable and low probable. 

3. After 4 evaluation rounds the most desirable scenario «Expanding the base through taxation of digital companies that have no physical presence in the country» remained moderately inconsistent. However, this is currently the most discussed scenario in the world, which is a part of OECD initiatives Pillar 1 and Pillar 2.

4. The most undesirable scenario with the strongest consensus was «Increasing the basic tax rate», although it is considered by Nobel Prize Laureate Joseph Stiglitz as one of the preferred scenarios for a particular group of countries.

5. The most discussed scenario in Ukraine since 2015 «Replacement of corporate income tax with tax on withdrawn capital» showed strong experts inconsistent on the desirability, as well as a moderate consensus on the low probability.

And finally, 6. The results of the Delphi method research did not close the discussion about corporate income taxation future in Ukraine, but only highlighted new issues that need further investigations. Thus, conducting such research on a regular basis should be a good foundation for making informed decisions about the future of the taxation system in Ukraine.

The generalizability of these results is subject to certain limitations:
1. The experts from Ukraine and The Commonwealth of Independent States could affect the breadth of views on the research problem.
2. The results of the study depend on the socio-economic and institutional conditions in Ukraine and cannot be fully extrapolated to the tax systems of the other countries.

Data are available in Ukrainian and Russian only.
DOI: 10.6084/m9.figshare.21657017.v1
title: Solanum americanum SMRT_RenSeq_Assemblies

description: <em>Solanum americanum</em> SMRT RenSeq assemblies