cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28452002.v1
title: Forest spatial configuration and local management influence bee pollinator biodiversity in urban and rural landscapes

description: Dataset 1 - Bee abundance for each site and coordinates to retrieve landscape variables from the source dataset online (see methods) Dataset 2 - Bee species richness, forest and meadow dataDataset 3 - Pollen grain counts on bee bodies and their traits<br>Abstract: Forests are crucial for sustainable land planning and they are believed to buffer land use changes and to promote human wellbeing and biodiversity. However, it is not clear how forests could influence bee diversity, that is responsible for the pollination ecosystem service. Here, we investigated bee biodiversity in relation to forests in agricultural and urban landscapes, and to urban forest features and flower richness in green areas; we also quantified the amount of pollen transported in relation to nesting and body-size traits. In the results, the importance of landscape variables depended on the macrohabitat: in agricultural lands, bee abundance increased with the number, distance and intermediate cover of forest patches, but in urban environments only forest shape complexity contributed. Moreover, in urban parks with mature urban forests, cavity-nesting bee richness increased with large logs and decaying wood, while bee richness increased with flower species richness in meadows adjacent to forests. Hence, open spaces rich in flowers and forests managed to keep understorey wood are relevant for increasing urban bee richness. Forest management could shape the occurrence of certain bee traits, but the nesting substrate trait will not modify the potential pollination ecosystem service because the amount of pollen transported related more to the body size. This study emphasises the importance of forested areas for bees in agricultural and urban environments. The results could contribute to develop biodiversity-friendly landscape planning and forest management practices when they are focused on ensuring wood elements, flowers and specific forest patch configurations sustaining bees.
DOI: 10.6084/m9.figshare.19786921.v1
title: Interpolation, Machine Learning, or Meteorological simulation? A comparison analysis for spatio-temporal estimation of meso-scale urban air temperature

description: Fine resolution spatio-temporal maps of near-surface urban air temperature (<i>T</i><sub><em>a</em></sub>) distribution provide crucial data inputs for sustainable urban decision-making, personal heat exposure, and climate-relevant epidemiological studies. However, due to the low density of reference meteorological stations, data at high spatial resolution that accounts for the complexity of the urban built environment is not always available. Recent availability of IoT weather station data now allows for high resolution urban <i>T</i><sub><em>a</em></sub> mapping using Machine Learning (ML). Here, we employ a network of NetAtmo crowd-sourced weather station data and XGBoost Gradient Boosting algorithm to predict/map daily <i>T</i><sub><em>a</em></sub> at nearly 1 km spatial resolution in Warsaw (Poland) during warm months (Jun - Sep). The output from the ML approach was used to map sub-daily (four times per day) variability in <i>T</i><sub><em>a</em></sub> for Warsaw at nearly 1 km<sup>2</sup> spatial (0.008°) resolution. See the related materials, describing the details of collecting/producing the data.
DOI: 10.6084/m9.figshare.6834770.v1
title: File S3: Saccharomyces cerevisiae predicted protein connectivity distribution data.

description: Saccharomyces cerevisiae predicted protein connectivity distribution data.
DOI: 10.17045/sthlmuni.5173477.v1
title: A map of agricultural systems in Africa by 1800

description: Illustrations, maps and GIS-files of the following articleWidgren Mats:  Agriculture in sub-Saharan Africa by 1800: a map and a gazetteer. In Mercuri, A.M., D'Andrea, A.C., Fornaciari, R., Höhn, A. (eds.): Plants and People in the African Past - Progress in African Archaeobotany (in press), SPRINGER The GIS-files can be opened with GIS programmes such as QGIS (open source) or ArcGIS. Note that they have to overlayered with coastlines (and lakes, depending on scale).If you use the data: please refer to the article.AbstractRecent global
historical cropland modelling grossly underestimates the pre-colonial
development of agriculture in the Americas and many parts of sub-Saharan
Africa. Such models are usually developed from backcasting from recent land
cover combined with environmentally deterministic algorithms. Historical
geographers have been slow in responding to this new demand for a global
synthesis. Here a a
preliminary map of African agricultural systems by 1800 AD is presented. It
forms part of the project Mapping Global Agriculture and is based on the
existing historical literature, observations by early travellers, archaeology
and archaeobotany. Its preliminary nature must be emphasized.
DOI: 10.6084/m9.figshare.1597607.v1
title: Marked strain-to-strain diversity in light harvesting antenna complex gene composition and expression in photosynthetic bacteria affiliated with or closely related to Rhodopseudomonas palustris

description: Alignment of <em>pucA </em>or <em>pucB </em>genes from photosynthetic bacteria affiliated with or closely related to <em>Rhodopseudomonas palustris.</em> These alignments were used to construct the phylogenetic trees in Fig. 1 and Fig. 2.
DOI: 10.6084/m9.figshare.25245745.v1
title: treefile in the Supplementary Fig. 5

description: treefile in the Supplementary Fig. 5Phylogenetic trees of major virus groups in seamount sediments.<br><br>
DOI: 10.6084/m9.figshare.27916542.v1
title: Supplementary Material for: Co-occurrence of two rare diseases: a child with phenylketonuria and WNT1 osteoporosis

description: Introduction: Phenylketonuria (PKU), an inborn error of metabolism, when inadequately treated, may lead to nutritional deficits, which could affect bone health. This remains a controversial issue, given that in the majority of PKU cases, bone mineral density is within normal limits. On the other hand, WNT1 mutations are detrimental for bone, as they lead to primary osteoporosis.
Case presentation: We present an eleven year-old girl under a very strict diet for phenylketonuria (i.e. with low phenylalanine levels) and severe osteoporosis, signified by the presence of multiple vertebral fractures, which could not be attributed to her inborn error of metabolism. Family screening, including bone densitometry revealed unexplained osteoporosis in her father and brother. Further genetic work up revealed a new WNT1, disease-causing mutation. The patient’s dietary plan was modified, in order to achieve better metabolic control and she was given vitamin D and calcium supplements. These measures led to great clinical and radiological improvement, without the use of bisphosphonates.
Conclusion: In a patient with a chronic disorder known to affect the skeleton, the presence of disproportionally severe osteoporosis should prompt further diagnostic work up, in order to explain the severe bone phenotype, thus enabling more efficient and targeted therapeutic interventions.
DOI: 10.6084/m9.figshare.26202266.v1
title: <i>Database: Combining social science and chemistry to uncover the potential of the traditional pit method for shea processing</i>

description: This study combines social science and chemistry to examine the use and chemical impact of the pit method. The study focuses on Burkina Faso due to its significance as a shea sourcing country and the traditional use of the pit method in the region. The study was guided by the following research questions: 1) How and why is the traditional pit method used in Burkina Faso? 2) What are the pros and cons of the pit method for the local processors, and what drives the adoption among new processors? 3) How does the pit method affect the chemical profile of the kernels? And 4) What are the pros and cons of the pit method for the shea industry? During the investigation 130 shea processors were interviewed, and 28 shea kernel samples (fresh, boiled, and pit-processed) were chemically characterized
DOI: 10.6084/m9.figshare.26347657.v5
title: Supplementary Materials (Table SM1)

description: Detailed literature review data on the occurrence and fate of emerging and persistent organic pollutants in dumpsite leachate, soils, and crops.
DOI: 10.6084/m9.figshare.3219244.v1
title: Eliciting positive, negative and mixed emotional states: A film library for affective scientists

description: We describe the creation of a film library designed for researchers interested in positive (amusing), negative (repulsive), mixed (amusing and repulsive) and neutral emotional states. Three hundred 20- to 33-second film clips videotaped by amateurs were selected from video-hosting websites and screened in laboratory studies by 75 female participants on self-reported amusement and repulsion (Experiments 1 and 2). On the basis of pre-defined cut-off values, 51 positive, 39 negative, 59 mixed and 50 neutral film clips were selected. These film clips were then presented to 411 male and female participants in a large online study to identify film clips that reliably induced the target emotions (Experiment 3). Depending on the goal of the study, researchers may choose positive, negative, mixed or neutral emotional film clips on the basis of Experiments 1 and 2 or Experiment 3 ratings.
DOI: 10.6084/m9.figshare.27020074.v3
title: IL3000 minicircle annotation and gRNA alignments

description: We annotated IL3000 minicircles from <i>de novo</i> assembly with a bespoken pipeline and followed the definition for gRNAs from a previous study. We aligned minicircle sequences to known edited mRNAs allowing G-U wobble base pairing to identify high-quality canonical gRNAs encoded within cassettes. The motifs of forward and reverse repeats and the initiation sequence enabled subsequent characterization of cassettes on each minicircle and the detection of non-canonical gRNAs by nucleotide bias. We defined canonical gRNA genes as gRNAs aligned to the edited mRNA without gaps for at least 25 nt with a maximum of three mismatches. The criteria were somewhat arbitrary and may misclassify some gRNAs with parameters close to the cutoffs. However, the strong association of gene characters we observed suggested that the ambiguities were unlikely to sway our conclusion. We detected 556 gRNAs in total. Excluding gRNAs aligned to the non-variable regions on alternatively edited mRNAs gave 465 gRNAs
DOI: 10.6084/m9.figshare.3184546.v2
title: Materials for "Accurate automatic detection of densely distributed cell nuclei in 3D space"

description: Data and code associated with "Accurate automatic detection of densely distributed cell nuclei in 3D space" manuscript.This data contains the images, ground truth, code, and executable used in the manuscript. "software.zip" includes code and executable of the image analysis pipeline. "data.zip" includes microscopy images and ground truth used in the manuscript. "data2.zip" contains 4D movie of whole brain activity imaging in Data2, a part of the dataset used in the manuscript.
DOI: 10.6084/m9.figshare.4810705.v1
title: EEG data--Early and Late Stage Processing Abnormalities in Autism Spectrum Disorders: An ERP Study

description: This research assessed event-related potentials (ERPs) elicited during the processing of different kinds of visual stimuli among children with Autism Spectrum Disorder (ASD) (n=15) and typically developing (TD) children (n=19). Within a simple visual oddball paradigm, participating children passively viewed fruit and vegetable images that were used as standard stimuli in addition to images of these foods with their usual colors modified to create novel stimuli and cartoon depictions of these images (i,e., “deviant” stimuli). Analyses revealed significant main effect differences between the groups for P100, N100 and P300 components; ASD group children showing longer P100 latencies, weaker N100 amplitudes and larger P300 amplitudes than TD group. A Group x Hemisphere interaction also emerged for N400 amplitudes but differences were not significant in simple-effects analyses. Together these results suggested children with ASD may be characterized by lower attention resource allocation, and engagement during early stages of processing visual stimuli. However, ERPs in later processing stages suggested children with ASD and TD children have similar neural responses in attending to visual images as stimulus presentations continue.
DOI: 10.6084/m9.figshare.24463879.v1
title: <b>Forest management affects ecosystem functioning (predation and herbivory) but not ecosystem constancy: A comparative study across four forest ecosystems around the </b><b>world</b>

description: Forest management can affect both the functioning and stability of ecosystems. Constancy, along with persistence are key factors that contribute to the overall stability of an ecosystem. These effects can be highly variable and change across forest ecosystems. We studied the effects of forest management on the strength of resource–consumer interactions (bird predation and insect herbivory) as important measures of ecosystem functioning, as well as on their constancy in time in four different forested regions globally. Within each region, we selected (i) three heavily managed or plantation forests, and (ii) three urban/peri-urban forests or urban plantings, and paired each of them with pristine/semi-natural forests. Bird predation was estimated using plasticine caterpillars with different colors. Chewer, galler, and miner herbivory on leaves were estimated for 15 plants (shrubs and trees) per study site. Constancy was quantified as the invariability of both predation and herbivory during a period of three years. We found no consistent responses in terms of either predation or herbivory to forest management practices across forest ecosystems. Bird predation was higher in urban/peri-urban forests than pristine/semi-natural forests in Patagonian and boreal forest, with intermediate levels of predation in managed or plantation forests. These differences might be explained by the increase of resource winter availability and by the higher abundances of generalist predators due to increase of temperatures (i.e., urban heat effect), for those regions where winter temperatures could be a limiting factor. Chewing insect herbivory was lower in urban/peri-urban forests, probably explained by the exclusion of certain herbivores in response to warming and the higher predation pressure. No differences were found in other types of herbivory, which support that effects of urbanization are guild-specific. In addition, we consistently found no effects of forest management practices on predation invariability and herbivory, thereby demonstrating the high constancy of ecosystem functioning to different forest management practices across regions. This can be a consequence of ecosystem stability. These findings improve our knowledge of the generalized effects of forest management on ecosystem functions and stability by establishing a connection between the ecology and management and conservation of plantations and natural forests.
DOI: 10.6084/m9.figshare.28705559.v2
title: BTS: Building Timeseries Dataset: Raw

description: The Building TimeSeries (BTS) dataset covers three buildings over a three-year period, comprising more than ten thousand timeseries data points with hundreds of unique Brick classes. Moreover, the metadata is standardized using the Brick schema.For more info, including data cards, check here: https://github.com/cruiseresearchgroup/DIEF_BTS
DOI: 10.6084/m9.figshare.c.3830017_d1.v1
title: Additional file 1: of Effects of the EQUIP quasi-experimental study testing a collaborative quality improvement approach for maternal and newborn health care in Tanzania and Uganda

description: Webannex I EQUIP Maps. Webannex II EQUIP mentoring and coaching. Webannex III EQUIP Timeline of assessment and implementation. Webannex IV Project charter. Webannex V EQUIP Example report card. Webannex VI Vignettes. Webannex VII EQUIP Example Runchart. Webannex VIII EQUIP Example Analysis. (ZIP 1064.96 kb)
DOI: 10.6084/m9.figshare.12187158.v1
title: Supplementary Material for: MicroRNA-93 Targets p21 and Promotes Proliferation in Mycosis Fungoides T Cells

description: <b><i>Background:</i></b> Mycosis fungoides (MF), the most common form of cutaneous T-cell lymphoma (CTCL), is a lymphoproliferative disorder characterized by proliferation of malignant T cells in a chronic inflammatory environment in the skin. The nature of MF is still not fully understood, but aberrant microRNA (miR) expression and function seem to play an important role in the pathogenesis and disease progression and have been proposed as a putative disease marker. Recent studies have reported aberrant expression of miR-93 in situ<i></i>in MF lesions and linked dysregulated miR-93 expression to advanced stages of MF. However, the pathophysiological role of miR-93 in MF is unknown. <b><i>Objective:</i></b> Here, we provide the first evidence that miR-93 targets the cell cycle regulator cyclin-dependent kinase inhibitor p21 and promotes growth of malignant T cells in MF. <b><i>Methods/Results:</i></b> Thus, inhibition of miR-93 in MF patient-derived malignant T-cell lines increases expression of p21 and inhibition of malignant proliferation. Notably, treatment with the histone deacetylase inhibitor Vorinostat (SAHA) reduces miR-93 expression and enhances p21 expression in the malignant T cells. Importantly, transfection with an miR-93 mimic partly blocks SAHA-induced p21 expression. <b><i>Conclusions:</i></b> we provide evidence that enhanced expression of the putative oncogenic miR, miR-93, represses the cell cycle inhibitor p21 and promotes proliferation of malignant T cells. Moreover, we demonstrate that SAHA triggers p21 expression – at least partly – through an inhibition of miR-93.
DOI: 10.6084/m9.figshare.17159195.v2
title: Supplemental Table S1. Effects of calcium ammonium nitrate fed to dairy cows on nutrient intake and digestibility, milk quality, microbial protein synthesis, and ruminal fermentation parameters.

description: Effect of calcium ammonium nitrate supplementation on plasma urea nitrogen (PUN) before (0 h) and after (4 h) feeding in lactating Holstein dairy cows. P-values: Treat = 0.64; Time &lt;0.01; Treat × time = 0.28; Linear = 0.37; Quadratic = 0.91; SEM = 1.43. URE: control group (without nitrate); CAN15: 15 g of calcium ammonium nitrate per kg of DM; CAN30: 30 g of calcium ammonium nitrate per kg of DM.
DOI: 10.6084/m9.figshare.28559093.v1
title: 2025-03-08-diatomics.json.gz

description: Diatom system test
DOI: 10.6084/m9.figshare.827260.v1
title: Do It Yourself Alcohol Lamp

description: A simple Do It Yourself (DIY) Alcohol Lamp for home laboratories. Original article posted on Science 2.0: http://www.science20.com/square_root_not/diy_spirit_lamp-110438 and featured on Citizen Scientists League: http://citizenscientistsleague.com/2013/05/01/diy-spirit-lamp/
DOI: 10.6084/m9.figshare.5848068.v1
title: whale shark peptide sequences predicted on Rtypus_kobe_v1.0

description: This resource is associated with our original publication https://doi.org/10.1038/s41559-018-0673-5
DOI: 10.6084/m9.figshare.6503075.v1
title: Oral and oropharyngeal cancer: epidemiology and survival analysis

description: ABSTRACT Objective To evaluate the epidemiological profile and survival rate of oral and oropharyngeal cancer patients seen at a university hospital. Methods A cross-sectional study was carried out by means of the pathological reports of patients with oral and oropharyngeal cancer, seen at a university hospital of the Southern Region, between January 2004 and December 2014. Information was collected on patients and tumors. The mortality rate was gathered from the patient death registry in the Mortality Information System. Data were analyzed using the Kaplan-Meier survival curve and the log-rank test to compare variables. Results The 5- and 10-year survival rates were 42% and 38%, respectively. The anatomical location had a significant association with survival rate (p=0.001), with the rates were better in the lips (p=0.04), and worse in the oropharynx (p=0.03). There were no statistically significant differences between survival rates according to age, sex, ethnicity, schooling level and histologic grade. Conclusion The survival rates of oral and oropharyngeal cancer were and associated with the anatomical site of the tumor.
DOI: 10.6084/m9.figshare.17701211.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 49
DOI: 10.6084/m9.figshare.28427807.v1
title: Divergent succession of microbial communities in the litter and soil layers during vegetation succession

description: Divergent succession of microbial communities in the litter and soil layers during vegetation succession
DOI: 10.6084/m9.figshare.21542175.v1
title: L2 Achievement and FLE

description: It contains 206 FL learners’ actual L2 achievement and their FLE. Each of the two variables was measured at two occasions across 10 months in a course where English was a foreign language (EFL) .
DOI: 10.6084/m9.figshare.21585693.v1
title: Round 1 - Lower secondary math scores

description: This data contains math scores of lower secondary grade 7 students in 2017 in Vietnam.
DOI: 10.6084/m9.figshare.28821809.v1
title: Perfect Storm Paper - Rainfall (mm) versus Average abundance of mosquitoes per trap per trap night

description: Comparison of Rainfall (mm) and average abundance of mosquitoes per trap per trap night for northern Victoria, Australia.
DOI: 10.4121/14309240.v2
title: [0] SPH simulations of a 2D dam-break flow against a vertical wall. General information on the collection

description: This dataset is the entry point to the simulations contained in the collection "High-resolution SPH simulations of the 2D dam-break benchmark solution by Meringolo et al., 2019" with referrer https://doi.org/10.4121/c.5353691<br><br>Perusing this dataset first is strongly recommended. It provides the context information on the collection, how the data have been generated, how they can be reproduced/ accessed/used, how they are named and organized in this collection. It also provides a redistribution of the DualSPHysics software suite used to generate the data.<br>The file <b>Commentary.pdf</b> in this dataset provides information on the generalities of the collection (physics, modelling, solver), on the test case (the dam-break flow impinging on a vertical wall), on the simulation datasets (aim, possible usages, creation and content, access, decompression, etc.), and on the research context. <br><i>Reading that file first is strongly recommended.</i><br>The companion datasets, then, contain the output results for values of the resolution parameter H/dx=800, 1600, 3200, 6400, leading to simulations with 1M, 5M, 20M, 82M fluid particles, as specified in the names of the datasets.<br><br>This one dataset also includes the images of the flow fields for each file in the output datasets above; users can preview their content and evaluate which files to download and inspect avoiding bulk downloads.<br>When using this dataset, please cite the overarching <b>collection</b> instead: Lipari, Giordano; Vuik, Cornelis (2021): High-resolution SPH simulations of a 2D dam-break flow against a vertical wall. 4TU.ResearchData. Collection. https://doi.org/10.4121/c.5353691 <br><br>
DOI: 10.6084/m9.figshare.19626003.v1
title: ICMR_Pterygium_Study_Data.csv

description: This dataset is from the ICMR EYE SEE study group on determination and comparing the prevalence of ocular diseases like cataract, dry eye and pterygium in multicentric geographically diverse locations of India including populations from plains, hilly and coastal areas. The study also explored the interplay of risk factors including UV radiation, environmental factors, smoking, use of bio-mass fuels etc. in ther pathogenesis.
DOI: 10.6084/m9.figshare.28774430.v1
title: Karanlığın Yüzyılı

description: Düşüncelerinizi özgürce anlattığınızda devrim ayaklarınızın altında olacak.