cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/1196731
title: Cimex Lectularius Genome Annotations v0.5.3

description: The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius  genome as part of the i5k pilot project. The C. lectularius  research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.

The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.

This dataset presents the Cimex lectularius gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Cimex lectularius genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.

NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
DOI: 10.17632/rhmwjbt789
title: CHATGPT; A GAME-CHANGER IN THE EDUCATIONAL SECTOR.

description: In the past decade, there has been rapid acceptance and adoption of Artificial Intelligence due to its ability to deliver timeous result with precision and accuracy. The most notable being the ChatGPT xhatbox, due to its ability to deliver high-quality human-like results in record time. This Article delves into the potential revolutionary solution to Formal Education in Nigeria.
DOI: 10.17632/zf8hpmdmjc
title: scRNA-Seq of rejecting human heart transplant biopsy

description: Cloupe files for a normal and acute rejection biopsy from an adult heart transplant patient
DOI: 10.6084/m9.figshare.27894246.v2
title: IMRMB-Net.zip

description: IMRMB
DOI: 10.6084/m9.figshare.29109806.v1
title: Matsuo_et_al_datasets.tar

description: Sequence datasets, alignments, and phylogenetic trees for "Eukaryotic recombinases duplicated after divergence from known Asgardarchaea: implications for the evolution of sex during eukaryogenesis."
DOI: 10.6084/m9.figshare.29206628.v1
title: Reimagining Disaster Resilience Education: A critical review of what can be transformative

description: The presentation summarises my PhD and in particular the findings of a critical review of international disaster resilience education programmes delivered in school settings.
DOI: 10.17632/vnyh3xprh3
title: Movie Research Bibliometrics 2007-2021

description: The dataset includes bibliometric information of academic papers published in the area of movie research between 2007-2021. A search query was initiated on Scopus – the largest bibliometric database. The following keywords were used to retrieve relevant studies: “cinema”, “film”, “motion picture”, “movie”, “box office”. For the purposes of this review, “stream” and “Netflix” were also added in the keyword list. The search query included journals with ABS 2 stars and above, in the areas of Business, Management & Accounting, Economics, Econometrics & Finance, Decision Sciences, and Psychology. The following information was retrieved for each paper: author details, title, year of publication, journal, ABS stars, total citations and author keywords. After filtering out irrelevant studies, the sample consisted of 744 papers.
DOI: 10.6084/m9.figshare.27979286.v1
title: Supplementary Material for: Retinal Vasculitis in the Setting of Mycobacterium Tuberculosis Exposure: Clinical Course and Management of Three Cases

description: Abstract
Introduction: Retinal vasculitis in the setting of positive mycobacterium tuberculosis (mTB) exposure represents an important diagnostic dilemma. Tubercular retinal vasculitis (TRV) is a recognized clinical entity that previously lacked diagnostic consensus. It shares clinical features with cases diagnosed as Eales disease. A precise distinction between the entities remains unclear. Historically, Eales disease represented an idiopathic, obliterative retinal vasculitis seen in young males. Research has identified a potential relationship of Eales to mTB exposure, but the exact role is unclear . We present the clinical course of three patients with retinal vasculitis and mTB exposure who were managed prior to group consensus guidelines for management of TRV. We discuss the evolving clinical meaning of Eales disease and review consensus TRV management guidelines. Case Presentations: The clinical course of three patients with retinal vasculitis and mTB exposure were reviewed. Two patients were male, and one was female. Mean age at presentation was 56.8 years. Mean follow-up was 119.5 months. Mean presenting visual acuity was Snellen 20/25 in the right eye and 20/30 in the left eye. Mean visual acuity at final visit was 20/30 in both eyes. All three patients received antitubercular therapy (ATT). Two patients underwent retinal laser photocoagulation in one or both eyes. Two patients experienced multiple episodes of vitreous hemorrhage. One patient underwent pars plana vitrectomy for non-clearing vitreous hemorrhage in both eyes. Conclusion: The cases presented demonstrate the potential diagnostic and management variability created by the overlapping features of Eales disease and TRV. All three cases had some form of positive mTB testing (radiologic, immunologic, or both) and received different ATT regimens. Case 1 was labeled Eales disease and Cases 2 and 3 were labeled TRV. All three had favorable outcomes with control of the inflammation and neovascular complications . Recent consensus guidelines now provide guidance on ATT initiation.
DOI: 10.6084/m9.figshare.28227902.v1
title: Mycobacterium bovis wgMLST scheme.

description: Backup of BioNumerics Mycobacterium tuberculosis variant bovis wgMLST scheme.
DOI: 10.6084/m9.figshare.29063255.v1
title: 土壤特性

description: 土壤特性
DOI: 10.6084/m9.figshare.6318833.v3
title: 31 Prochlorococcus Isolate Genomes

description: Contigs databases for 31 Prochlorococcus isolate genomes.<br>These genomes used in this study:<br>https://peerj.com/articles/4320/<br>And used in the pangenomics tutorial for anvi'o:<br>http://merenlab.org/2016/11/08/pangenomics-v2/<br>
DOI: 10.17632/5xjf2br8t5
title: The Impact of Action Planning after  Causation-and-Effectuation-Based Entrepreneurship Education

description: The entrepreneurship literature shows inconsistent results in outcome effectiveness, such as en-trepreneurial self-efficacy (ESE), entrepreneurial intention (EI), and entrepreneurial behavior. This could be due to the sole focus on the motivational aspects of behavioral change. Action planning, a volitional intervention used to modify health behavior, could resolve the inconsistent results men-tioned above. Therefore, this study aims to evaluate the direct impacts of action planning inter-vention (API) following entrepreneurship education (EE) on ESE, EI, and opportunity recognition and to examine the behavioral change process from motivational and volitional perspectives. In this randomized controlled trial (RCT), we considered action planning to enhance entrepreneurial be-havior after EE. The sample included 83 participants from a university in Myanmar. We randomly assigned the students to the API and control groups. We collected data on ESE and EI before and after training. We used objective measures for opportunity recognition through an opportunity evalua-tion framework. Serial mediation analysis revealed that the volitional impact on opportunity recognition was positively significant. From a motivational standpoint, ESE improved significantly, but we found no significant impact on EI; ESE and EI were serial mediators, with no specific medi-ation solely by ESE or EI. The findings contribute to the EE literature by presenting a brief and cost-effective API for EE.
DOI: 10.17632/mmz2gznth5
title: The phosphodiesterase 2A controls lymphatic junctional maturation via cGMP-mediated control of Notch signaling. Carlantoni et al.

description: The molecular mechanisms by which lymphatic vessels induce cell contact inhibition are not understood. Here, we identify the cGMP-dependent phosphodiesterase 2A (PDE2A) as a selective regulator of lymphatic, but not blood endothelial contact inhibition. Conditional deletion of Pde2a in mouse embryos reveals severe lymphatic dysplasia, while blood vessel architecture remains unaltered. In the absence of PDE2A, human lymphatic endothelial cells fail to induce mature junctions and cell cycle arrest, while cGMP levels, but not cAMP levels, are increased. Loss of PDE2A-mediated cGMP hydrolysis leads to activation of p38 signaling and downregulation of NOTCH signaling. Vice versa, DLL4-induced NOTCH activation restores junctional maturation and contact inhibition in PDE2A-deficient lymphatic endothelial cells. In postnatal mesenteries, PDE2A is specifically enriched in collecting lymphatic valves and loss of Pde2a results in formation of abnormal valves. Our data demonstrate that PDE2A selectively finetunes a crosstalk of cGMP, p38 and NOTCH signaling during lymphatic vessel maturation. Source data Original western blot images of the main figures
DOI: 10.6084/m9.figshare.28581020.v1
title: JinEr mushroom genome and structure annotation

description: Genome and structure annotation
DOI: 10.17632/8ftmmsjhdy
title: Software Self-hosting: A systematic review of quantitative research - Replication package

description: In an era marked by heightened concerns surrounding personal privacy and data security, software self-hosting has gained significance as a means for individuals and organisations to reclaim control over their digital assets. We have performed a systematic review which aimed to identify relevant research gaps in the quantitative analysis of self-hosting, primarily focusing on studies employing Structural Equation Modelling (SEM) and regression techniques. Employing a refined version of the Systematic Mapping Process, we analysed 49 quantitative research papers whose concepts were grouped into 12 substantive groups.

We have limited our search to four of the biggest and most important scientific databases in the field of computer science: IEEEXplore, ACM, Science Direct and Scopus. The search was conducted in November 2023.
DOI: 10.6084/m9.figshare.14776176.v2
title: DelphiPruebaIngreso.xlsx

description: The data indicates the experimental results of two Delphi rounds. Both rounds ask for a probable prognosis of the results on a college entrance test. The data contains the most probable perception perceived, bounded by its minimum and maximum values. The data also contains information on the levels of security and insecurity of each individual, at the time of issuing their response.
DOI: 10.17632/cynrsfsvg5
title: Dataset: Aaron Industries Limited (AARON.NS) Stock Performance

description: This dataset provides historical stock market performance data for specific companies. It enables users to analyze and understand the past trends and fluctuations in stock prices over time. This information can be utilized for various purposes such as investment analysis, financial research, and market trend forecasting.
DOI: 10.17632/3bsfy669xt
title: Employees’ personal relative deprivation negatively associated with job satisfaction and affective commitment: The mediating role of work-related basic need satisfaction

description: The current study aims to investigate the relationships between personal relative deprivation and employees’ attitudes towards job and organization and the underlying psychological mechanisms of the associations. Drawing on the self-determination theory, we propose the personal relative deprivation leads to the three work-related basic needs unsatisfied, which in turn lower the job satisfaction and affective commitment. We collected data from 390 participants recruited from a professional research participation system. The results indicated that higher level of personal relative deprivation significantly reduce individual’s job satisfaction and affective commitment. The indirect effects of personal relative deprivation on the job satisfaction or affective commitment through the satisfaction of the autonomy needs or the satisfaction of the relatedness needs are significant, while the mediating effects of the satisfaction of competence needs are nonsignificant.
DOI: 10.6084/m9.figshare.16399284.v1
title: Random Base Editing NGS

description: Whole Genome Sequencing Data and SNP analysis results
DOI: 10.6084/m9.figshare.27888378.v1
title: Additional files for Drivers of the temporal dynamics of social bee viromes

description: This folder contains:the plant-insect interactions recorded for the three time points of April (1), June (2) and August (3) 2016, from which we calculated the Horn-Morisita niche dissimilarity indices.the insect virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus</i><i> </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirINS files for insect viruses, number 1 for April, 2 for June, 3 for August.the plant virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus</i><i> </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirPLANT files for insect viruses, number 1 for April, 2 for June, 3 for August.the mitochondrial gene COI sequence alignment for the 5 bee species.the R script used to test the effect of host ecological niche dissimilarity (Horn-Morisita), the host phylogenetic distance (using DNADist method to calculate the nucleotide distance between aligned sequences) and phenology (time points) on virome dissimilarity.Data (files 'ApisFromsiRNA', 'ApisMetaTrans', 'BombusFromsiRNA', and 'BombusMetaTrans'), and scripts to generate the Venn diagram showing overlap in virus composition between honeybees and bumblebees, and between meta-transcriptomes and small-RNA sequencing.Output files of small RNA sequences screen for viral reads, using CoverM and the same viral assembly targets as for meta-transcriptomes (text file names starting with 'covread_small*). Number 1 for April, 2 for June, 3 for August.17 individual meta-transcriptome library output files from virus screening with CoverM (text files with libary names). Number 1 for April, 2 for June, 3 for August.One table that provides the final names of viral assemblies used in the article (file named 'reference names viruses').The list of viral assemblies in FAS format (file named 'Viral assemblies for mapping').One data table with compiled and normalized (by viral target sequence length and transcriptome depth) read numbers for each viral target and libraries (file named 'Normalized Log Viromes').A text file (named 'BeeViromeRscript') shows the R script used to perform the analyses, including heat maps, PERMANOVA and NMDS plots.The datasets for both meta-transcriptomes (names 'NormalizedNumberReadsMetaTrans') and small RNA sequences (named 'NormalizedNumberReadssiRNA'), including for both normalized read numbers for each viral targets and libraries, including taxonomic classification of viruses (named 'NormalizedNumberReadsMetaTrans_withTAXA'), A text file with the R scripts to generate the bipartite networks, perform network modularity analyses and calculate diversity metrics (named 'BeeViromeBipartiteNetworks').
DOI: 10.6084/m9.figshare.28260164.v1
title: Broadband Kinetic Alfvén Waves and the Pitch Angle Distribution of Relativistic Electrons

description: These datafiles are for figures produced in the manuscript "Broadband Kinetic Alfvén Waves and the Pitch Angle Distribution of Relativistic Electrons" by K. C. Barik and C. C. Chaston.
DOI: 10.6084/m9.figshare.8023436.v1
title: Transcriptomic Analysis of embryonic commissural neurons

description: Transcriptomic analysis of embryonic commissural neurons identifies preferentially expressed genes and reveals molecular heterogeneity
DOI: 10.17632/ry7cy2k7hb
title: Table_S1_Structural_Sites_Coordinates_and_raw_structural_data_Pag

description: Coordinates of structural analysis measurements sites and list of raw structural measurements on the Island of Pag, Croatia.
DOI: 10.6084/m9.figshare.26212643.v1
title: The dataset of main grain land changes in China over 1985–2020

description: We have collected spatial distribution datasets of rice, wheat, and maize in China within a resolution range of 30m-1km, spanning from 1985 to 2020. Based on these existing datasets, we have utilized data fusion techniques to create a nationwide fundamental sample dataset of main grain land (MGL). Considering 7 types comprehensively, including single wheat, single rice, single maize, wheat & maize, wheat & rice, double rice, and non-MGL, we have automatically selected 100,000 sample points nationwide from the fundamental sample dataset using stratified sampling. Meanwhile, utilizing Landsat imagery from the GEE platform, we have constructed a remote sensing imagery feature set for each year. Available spectral features are synthesized every three months, including red, green, blue, and near-infrared bands, as well as NDVI, NDBI, and NDWI. By combining four spectral features from each year, we have formed a phenological feature dataset. Finally, using the random forest algorithm, we individually mapped the MGL for each year. In addition, we assigned MGL and non-MGL values of 1 and 0 to all cropland, respectively. The planting intensity, gain time and loss time of cropland and MGL was calculated.<br>
DOI: 10.6084/m9.figshare.21899877.v2
title: Table S4

description: <b>Table S4 </b>Gene model naming scheme. This table shows our abbreviation scheme and our fasta header gene ID scheme. Notice that for example a gene id "iba_apa00730g01.1" includes the following information: iba = <i>Ipomoea batatas</i>; apa= genotype apache; 00730 = contig number; g01= specifies the gene number in the respective contig ex. g01 means this is the first gene in the contig; .1 = remind us that this gene has a transcript sequence associated in a different file
DOI: 10.6084/m9.figshare.28874390.v1
title: Supplementary Material for: Familial kidney disease phenocopying hypertensive nephropathy

description: Introduction
Familial kidney disease is common in Cyprus and previous studies have found that the majority of families have mutations in Alport syndrome genes COL4A3/4/5.
We have collected data from over 50 Turkish Cypriot families in whom kidney disease appears to follow an autosomal dominant (AD) pattern, and looked for pathological variants in these genes.
Methods 
Probands from 55 families underwent massive parallel DNA sequencing using a glomerular gene panel for familial hematuria, and whole exome sequencing (WES) was also performed in 22 of them. Clinical records were reviewed.
Results
Likely pathogenic variants were identified in 7 of the 55 families (COL4A3 (3), COL4A4 (2), and COL4A5 (2)), leaving 48 unsolved families. Among the latter a common missense variant of uncertain significance (COL4A4:p.G545A), was present in 5 families (9.1%). In contrast to families with a pathogenic variant in COL4A3/4 and a clear glomerular phenotype the 5 families (54 patients with clinical and genetic data), manifested near dominant susceptibility with incomplete penetrance, presenting with hypertension, variable and intermittent microscopic hematuria, and minimal proteinuria,&lt;1 g/day until the estimated glomerular filtration rate (eGFR) fell below 30 ml/min, after which it increased in some individuals. Of those over age 50, 20% had reached end-stage by median age of 66 (48-80) years.
Conclusions
We describe a kidney disease with mild hypertension that is more characteristic of a tubulointerstitial disease and phenocopies hypertensive nephropathy. While the variant COL4A4:p.G545A is not responsible for a Mendelian CKD phenotype, it appears to increases the susceptibility, acting as a hypomorphic variant contributing to Alport spectrum nephropathy. Early detection and treatment with ACE inhibitors should prolong kidney survival to an age where hemodialysis is avoided.
DOI: 10.6084/m9.figshare.3529145.v1
title: Appendix A. Methods for the review and meta-analysis of avian functional diversity.

description: Methods for the review and meta-analysis of avian functional diversity.
DOI: 10.17632/9d65p4z799
title: GC-MS analysis of 13C metabolic labeling of HeLa kyoto cells expressing DadA in answer to intramitochondrial pyruvate influx by Grubraw

description: We analysed 13C metabolic inclusion into aminoacids, lactate, and fatty acids in HeLa cell lines stably expressing Pseudomonas aeruginosa DadA (FAD-dependent D-amino acid dehydrogenase) gene with mitochondrial targeting (named Grubraw) after the addition of 12C D-alanine comparing to no D-alanine. We used HeLa with functional DadA and mutated DadA for control. In cells expressing functionally active DadA, D-alanine generates additional influx of intra-mitochondrial pyrovate. If cells grows on labelled carbone source and unlabeled D-alanine is used, this upcoming pyruvate shifts original mass-isotopologue distribution that can be registered by GC-MS. Our cells were cultured for in a medium with labeled glucose or glutamine. To obtain current data at 90 min timescale, we changed rich growth medium with labelled glucose to pure phosphate medium containing labeled glucose as only carbon substrate. In 24h timescale, we added labelled glucose or glutamine into rich medimum and change it to fresh one 24h before the extraction. We publish original CDF data from Shimadzu TQ8040 mass-spectrometer. In “G” folders we put experiments with glucose as the only carbon source. In “GQ” folders, there are measurements for glucose+glutamine experiments. G/Q in folder name indicates the experiment with labelled glucose or glutamine correspondingly (the other source is unlabelled). “90m”/”24h” - indicate the treatment scheme (see next section). “C12”/”C13” in folder name indicates using of isotopically labeled carbon source or non-labeled one. All files are named in a similar way. “M”/“D” in file name indicate using a cell line with mutated (M) or functional (D) DadA. “+”/“-” indicates the addition of D-alanine. First number is a biological replicate, second number - technical replicate.