cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29097173.v1
title: Figures.pdf

description: Allergic rhinitis (AR) is a prevalent global health concern with significant implications for public health.Current treatment approaches for AR patients have obvious concerns, which include various adverse effects, low remission rate, and less effective for those patients with unknown causing allergens. Thus, there is an urgent need to develop alternative therapeutic strategies that are both safe and effective for different allergens. In this study, we providedrobust evidence demonstrating that Lactobacillus plantarumGUANKE immunobiotic strain exerts its therapeutic effects by suppressing AR-associated cytokines and chemokineswhilerestoring epithelial barrier integrity. By using single-cell sequencing analysis, we further revealed that GUANKE inhibited Th2 cell differentiation in the nasal mucosa, thereby modulating the immune responses. Targeted metabolomics showed that GUANKE significantly increased levels of equol, indole-3-propionic acid (IPA), and phenylalanine metabolism as well.Additionally, we not only demonstrated that GUANKE has broad therapeutic effectsin improving nasal symptoms induced by two other allergens, mugwort and HDM, but also revealed that such therapeutic effects were attributed to the reduced levels of cytokines and chemokines as well as its inhibitory effect on Th2 cell differentiation.
DOI: 10.17632/t6cs4m68df
title: Replication Package for "High-frequency Trading in the Stock Market and the Costs of Option Market Making"

description: This zip file contains the replication package for "High-frequency Trading in the Stock Market and the Costs of Option Market Making" by Mahendrarajah Nimalendran, Khaladdin Rzayev, and Satchit Sagade.
DOI: 10.6084/m9.figshare.13271684.v1
title: PhyloP scores, state annotation and duration for 200bp genomes windows

description: PhyloP scores, genome wide in mouse genome, averaged in 200bp genomic windows (bigWigAvgOverBed), separated by tissue and state. First three columns are genomic coordinates, the next six are output from bigWigAvgOverBed, the remaining columns are genomic state annotation and duration for that location being in the respective state (across developmental timepoints; see publication).
DOI: 10.6084/m9.figshare.17109344.v1
title: count-data-spleen-annotated.rds

description: tissue-specific single-cell read count data showing the changes with parabiosis
DOI: 10.6084/m9.figshare.20677030.v1
title: Pretreatment and Enzymatic Saccharification of Water Hyacinth, Sugarcane Bagasse, Maize Straw, and Green Coconut Shell Using an Organosolv Method with Glycerol and FeCl3

description: A method to pretreatment of biomasses using glycerol as a green solvent was developed. Optimization of organosolv pretreatment was performed using a 23 factorial design, investigating synergism among the variables particle size (from &lt; 0.85 to &gt; 2.0 mm), FeCl3 concentration (0.025-0.175 mol L-1), and temperature (160-220 °C). Although the effects of the variables differed according to the type of lignocellulose, it was nonetheless possible to find an optimal condition in common (&lt; 0.85 mm; 0.025 mol L-1; 220 °C), which was economically and environmentally sustainable, employing a small amount of catalyst. The biomasses pretreated using this combination of factors exhibited enzymatic digestibility exceeding 93% after 48 h, reflecting efficient reduction of recalcitrance as a result of high removal of hemicellulose (ca. 90%), provided by the use of FeCl3, together with substantial delignification. There was low formation of inhibitors in the hydrolysate, indicating that it could be directly fermented. The lignin removed to liquors could be easily recovered by centrifugation. Tests carried out under the optimal condition revealed that after the pretreatment the biomass could be directly used in enzymatic hydrolysis, without washing and wet. Furthermore, after simple treatment, crude glycerol was as effective as commercial glycerol.
DOI: 10.6084/m9.figshare.22941959.v1
title: PlantSize.2018.csv

description: Raw data: plant size measurements
DOI: 10.6084/m9.figshare.4763335.v1
title: Anatomy Textbook Analysis

description: Two CSV files:1. Coding of all images2. Coding of narrative images only
DOI: 10.6084/m9.figshare.5126020.v1
title: Supplementary Material for: A Network-Based Kernel Machine Test for the Identification of Risk Pathways in Genome-Wide Association Studies

description: Biological pathways provide rich information and biological context on the genetic causes of complex diseases. The logistic kernel machine test integrates prior knowledge on pathways in order to analyze data from genome-wide association studies (GWAS). In this study, the kernel converts the genomic information of 2 individuals into a quantitative value reflecting their genetic similarity. With the selection of the kernel, one implicitly chooses a genetic effect model. Like many other pathway methods, none of the available kernels accounts for the topological structure of the pathway or gene-gene interaction types. However, evidence indicates that connectivity and neighborhood of genes are crucial in the context of GWAS, because genes associated with a disease often interact. Thus, we propose a novel kernel that incorporates the topology of pathways and information on interactions. Using simulation studies, we demonstrate that the proposed method maintains the type I error correctly and can be more effective in the identification of pathways associated with a disease than non-network-based methods. We apply our approach to genome-wide association case-control data on lung cancer and rheumatoid arthritis. We identify some promising new pathways associated with these diseases, which may improve our current understanding of the genetic mechanisms.
DOI: 10.6084/m9.figshare.7771091.v1
title: Dataset for paper "Non-Invasive Assessment of Mild Stress-Induced Hyperthermia by Infrared Thermography in Laboratory Mice"

description: This is the dataset for the study reported in the paper "Non-Invasive Assessment of Mild Stress-Induced Hyperthermia by Infrared Thermography in Laboratory Mice". The detailed description of the data for each sheet in the Excel file, is provided in the sheet named "Key".
DOI: 10.6084/m9.figshare.c.3607397_d4.v1
title: Additional file 10: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S9. Software used in this study. (XLSX 39 kb)
DOI: 10.17632/8mzr23hy7y
title: Spironolactone treatment for dermatologic indications is not associated with hypotension in a single-center retrospective study

description: Spironolactone treatment for dermatologic indications is not associated with hypotension in a single-center retrospective study
DOI: 10.17632/jzxcj7jdjw
title: Quantitative NMR Data of Isolated Compounds (1-12)

description: Physicochemical characterization and NMR data of isolated Compounds (1-12)
DOI: 10.25403/upresearchdata.25869421.v1
title: Seven gay men regarding their experiences of relationship stigma in the gay community

description: This dataset contains qualitative verbatim interview transcripts of seven gay men in South Africa. The participants were voluntarily recruited from various locations across South Africa. Data were collected through individual and unstructured virtual interviews. No interview schedule was utilised, though a grounding question was asked ("Can you tell me about an instance where a gay man behaved negatively towards you because of your relationship arrangement?"). The unstructured interview format was aimed at generating participants' experiences of stigma towards their consensually non-monogamous relationship arrangement that occurred within the gay community. Six of the seven participants were identified as White and one as Coloured, while sixcharacterised their relationships as 'Open' and one as 'Polyamorous.' Mage = 30. Note that all names used in the data are pseudonyms.
DOI: 10.6084/m9.figshare.22647490.v1
title: README.rtf

description: README with file descriptions.
DOI: 10.6084/m9.figshare.27933984.v1
title: ChatGPT Data JP.docx

description: Input and output data from long-term learning in mathematical statistics using ChatGPT
DOI: 10.6084/m9.figshare.7686215.v1
title: Additional file 5: of Rootstock-induced molecular responses associated with drought tolerance in sweet orange as revealed by RNA-Seq

description: Table S4. Differentially expressed genes related to cellular response in leaves of sweet orange (Citrus sinensis) grafted on ‘Rangpur’ lime. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9273491.v1
title: Dataset of human subjects walking on a treadmill while being perturbed at random intervals by cables attached at their waist.

description: Dataset of center of mass and foot positions for human subjects walking on a treadmill while being randomly perturbed either sideways or backwards at discrete points of time.
DOI: 10.17632/v38n3wbsrt
title: Coupling isothermal and adiabatic mode experiments for kinetic constants estimation

description: These data contained synthetic data and kinetic modeling results
DOI: 10.6084/m9.figshare.14742963.v1
title: Supplementary Material for: Ischemic Preconditioning for Liver Transplantation: A Systematic Review and Meta-Analysis of Randomized Controlled Trials

description: <b><i>Background:</i></b> In recent decades, liver transplantation (LTx) has increased the survival and quality of life of patients with end-stage organ failure. Unfortunately, LTx is limited due to the shortage of donors. A lot of effort is put into finding new ways to reduce ischemia-reperfusion injury (IRI) in liver grafts to increase the number of suitable organs procured from expanded-criteria donors (ECD). The aim of this study was to systematically review the literature reporting LTx outcomes when using ischemic preconditioning (IPC) or remote ischemic preconditioning (RIPC) to reduce IRI in liver grafts. <b><i>Methods:</i></b> A literature search was performed in the MEDLINE, Web of Science, and EMBASE databases. The following combination was used: “Liver” OR “Liver Transplantation” AND “Ischemic preconditioning” OR “occlusion” OR “clamping” OR “Pringle.” The following outcome data were retrieved: the rates of graft primary nonfunction (PNF), retransplantation, graft loss, and mortality; stay in hospital and the intensive care unit; and postoperative serum liver damage parameters. <b><i>Results:</i></b> The initial search retrieved 4,522 potentially relevant studies. After evaluating 17 full-text articles, a total of 9 randomized controlled trials (RCTs) were included (7 IPC and 2 RIPC studies) in the qualitative synthesis; the meta-analysis was only performed on the data from the IPC studies. RIPC studies had considerable methodological differences. The meta-analysis revealed the beneficial effect of IPC when comparing postoperative aspartate aminotransferase (AST) corresponding to a statistically lower mortality rate in the IPC group (odds ratio [OR] 0.51; 95% confidence interval [CI] 0.27–0.98; <i>p</i> = 0.04). <b><i>Conclusion:</i></b> IPC lowers postoperative AST levels and reduces the mortality rate; however, data on the benefits of RIPC are lacking.
DOI: 10.6084/m9.figshare.19519096.v1
title: Input data for inverse modeling

description: This Excel file presents sheets for each of the valleys used in the inverse modeling to calculate uplift rates and cumulative uplift. Each sheet includes the following spatial data: x, y, elevation, distance from stream head and drainage area.
DOI: 10.6084/m9.figshare.24783858.v1
title: MArine Bioprospecting PATent database

description: The goal of the MABPAT database is to provide a useful insight into the scope and scale of marine bioprospecting. We offer the research and practitioner community with direct access to marine genetic sequences submitted to patent bureaus, their potential to encode biological functions, species taxonomy, type of applicant, and other information that might be relevant for the discussion on the access and utilization of marine genetic resources.Erik Zhivkoplias, Agnes Pranindita, Paul Dunshirn et al. Novel database reveals growing prominence of deep-sea life for marine bioprospecting, https://doi.org/10.21203/rs.3.rs-3136354/v1
DOI: 10.6084/m9.figshare.24968679.v1
title: Genome assembly and annotation of the western flower thrips <i>Frankliniella occidentalis</i>

description: Frankliniella_occidentalis_genome_assembly.fa: genome assembly file of Frankliniella occidentalisFrankliniella_occidentalis_gene_structure_annotation.gff: genome structure annotation file of Frankliniella occidentalisFrankliniella_occidentalis_protein_coding_gene.fa: protein file of Frankliniella occidentalis
DOI: 10.6084/m9.figshare.27287541.v1
title: Supporting Data: Photoluminescence of a Uranium(IV) Alkoxide Complex

description: Supporting computational data for the publication titled:L. R. Valerio, S. Roy Chowdhury, R. Lewis, K. E. Knowles,* B. Vlaisavljevich,* and E. M. Matson* “Photoluminescence of a Uranium(IV) Alkoxide Complex", <i>S</i>ubmitted to JACS Au.
DOI: 10.6084/m9.figshare.29070398.v1
title: CSR Data

description: Plant leaf traits of 2,503 individuals from 160 woody species were measured, and the components of CSR were quantified at both individual and community levels.
DOI: 10.6084/m9.figshare.3513692.v1
title: Appendix A. An outline of methods employed to develop spatial data sets of anthropogenic features and to evaluate human footprint model output.

description: An outline of methods employed to develop spatial data sets of anthropogenic features and to evaluate human footprint model output.
DOI: 10.6084/m9.figshare.3528374.v1
title: Appendix A. Empirical basis of parameter ranges for focal parameters.

description: Empirical basis of parameter ranges for focal parameters.
DOI: 10.17632/gcrf6s8xh3
title: Dataset for "Centennial-Scale Shifts in Hydro-Physical Properties of Peat Induced by Drainage"

description: Centennial-Scale Shifts in Hydro-Physical Properties of Peat Induced by Drainage. The database contains subsidence, bulk density, and organic matter content separately for forested and agricultural peatlands.
DOI: 10.25415/ujhb.28016132.v1
title: Climate change and household debt

description: The research examines the impact of climate change on household debt using precipitation and CO2 emissions as proxies for climate risk. It further examines the moderating role of central bank independence on the impact of climate change on household debt.
DOI: 10.6084/m9.figshare.13637966.v1
title: Tumor Classification Model

description: A pytorch loadable model for tumor classification
DOI: 10.6084/m9.figshare.14866917.v3
title: Supplementary Data File 2

description: Integrated Network Details. Publication, gene count, edge count and experimental type for each yeast network and each human network used in <strong>Fig. 2-6</strong>. Rows in yellow indicate the three yeast networks used in <strong>Fig. 2-4, 6</strong> integrations.
DOI: 10.6084/m9.figshare.19771624.v1
title: ANI, AAI and dDDH analysis of A. apicola vs other Arsenophonus strains

description: Average Nucleotide Identity (ANI), Average Amino acid identity (AAI) and Digital DNA-DNA Hybridization (dDDH) data for Arsenophonus apicola compared to other sequenced strains within the clade Arsenophonus, and with Providencia stuartii and Proteus mirabilis as outgroup genera. <br> Sheet 1: Pairwise ANI between strains. Sheet 2: Pairwise AAI between strains. Sheet 3: dDDH of A. apicola vs other strains using three calculation methods. <br> ANI and AAI Calculations were made using the enveomics toolkit (Rodriguez-R LM, Konstantinidis KT. The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints. 2016;4:e1900v1.). <br> dDDH calculations were completed using the Genome-to-Genome Distance Calculator GGDC 3.0 from dsmz (https://www.dsmz.de/services/online-tools/genome-to-genome-distance-calculator-ggdc).
DOI: 10.6084/m9.figshare.27321012.v1
title: MaxTex(P)

description: In terms of printing, MaxTex (P) not only expands the sample size to 223000, becoming the best and largest mathematical formula dataset in terms of quality, but also adopts an efficient and unified word element design (431 words), avoiding the symbol redundancy problem in IM2LATEX-100K (516 words)
DOI: 10.15468/dl.vad9mc
title: Occurrence Download

description: A dataset containing 45241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Imperata cylindrica (L.) Raeusch.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 45241 records from 446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013214-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/383wc6f6d6
title: Face/Off: The Adverse Effects of Increased Competition

description: In this repository, you can find the material (e.g., dataset, codes) required to replicate the main analyses in the manuscript.
DOI: 10.17632/p8988t5cwg
title: CBD2023:A Hypercomplex Bangla Handwriting Character Recognition Dataset for Hierarchical Class Expansion Using Deep Learning

description: This dataset comprises approximately 80,000 meticulously organized Bangla character images, serving as a valuable resource for research in Bangla character recognition. Featuring 583 distinct character classes, including numerical characters, it provides a comprehensive foundation for researchers exploring various machine learning algorithms, developing deep neural networks, or conducting comparative studies in the field. To generate this dataset, Bangla words were initially written on A4-sized pages. Photocopies of the text were distributed to individuals, primarily students from Nazirhat Collegiate High School and Nazirhat College. Participants reproduced the text on another A4-sized paper based on the photocopy. The resulting dataset is organized as a zip file containing two main folders: "traindata" and "testdata." Traindata: Together Folder: This folder contains all images without labels. The corresponding labels and image names are stored in a CSV file called "full_df_train.csv." The CSV file has three columns: "image_name," "Label," and "long_label." The "Label" column categorizes classes into broader groups such as 'consonant,' 'vowel,' 'compound,' 'number,' 'kar-fola,' etc. The "long_label" column provides more detailed labels, with 583 individual classes denoted by numbers like 1, 2, 3, 4, etc. Total_datafinal Folder: This folder is independent and contains 583 subfolders, each representing a distinct class. Images within each subfolder correspond to the respective class name. Unlike the "Together" folder, the images here are labeled independently, making it suitable for different use cases. The "long_label" in the "Together" folder and the subfolder names in this folder are identical. Testdata: Test_Datatogether Folder: Similar to the "Together" folder in the training data, this folder contains images without labels. The corresponding labels and image names are stored in a CSV file connected to it. Test_Data Folder: This folder is independent and mirrors the structure of the "Total_datafinal" folder in the training set. It consists of 583 subfolders, each representing a class, with images stored accordingly. The meticulous organization ensures the dataset's usability and accessibility for various research applications in the realm of Bangla character recognition. Researchers can leverage this dataset for tasks such as Bangla character recognition, with the flexibility to use the labeled or unlabeled versions based on their specific requirements.
DOI: 10.6084/m9.figshare.26391571.v1
title: Data for changing plant phosphorus acquisition strategies in relation to altered soil phosphorus fractions after wetland drainage

description: 1. Plant phosphorus (P) acquisition strategy is considered to be an intrinsic driver behind plant succession. However, variations in plant P acquisition strategies in connection to soil P fraction changes after wetland drainage remain unclear.2. To address this issue, here we conducted a study in six distinct wetlands that experienced long-term (&gt; 20 years) artificial drainage, with the adjacent waterlogged wetlands as a control. We analyzed plant community composition, biomass and soil P fractions, and identified three plant P acquisition strategies based on soil acid phosphatase activity, plant P resorption efficiency, and soil arbuscular mycorrhizal fungi (AMF) content.3. We found that soil calcium-bound P (P<sub>Ca</sub>) and enzyme-extractable P (P<sub>enzyme</sub>) were key factors influencing plant P acquisition. Soil P<sub>Ca</sub> correlated negatively with acid phosphatase activity but positively with AMF content. Soil P<sub>enzyme</sub> negatively impacted P resorption efficiency. The wetlands were categorized into three types and each exhibited distinct plant P acquisition strategies. These changes in strategies after drainage corresponded with shifts in soil P fractions.4. Overall, our study highlights the role of soil P fractions in explaining plant P acquisition strategies after wetland drainage, suggesting P regulations on plant succession and ecosystem services.
DOI: 10.6084/m9.figshare.5786484.v2
title: Timelapse 5a - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5861043.v1
title: Tumor0909 slide 5

description: This is the single-cell western blot image data showing primary Tumor0909 cells immunoprobed by:HER2 antibody (488 nm laser channel)GAPDH antibody (532 nm laser channel)Actinin antibody (635 nm laser channel)rs6 antibody (488 nm laser channel)p-rs6 antibody (635 nm laser channel)<br>panCK antibody (635 nm laser channel)
DOI: 10.17632/p83n67xdb8
title: POT4A — A program for the direct solution of poisson's equation in complex geometries

description: Title of program: POT4A Catalogue Id: ACDB_v1_0 Nature of problem The program solves Poisson's equation in a rectangular region. Electrodes and dielectric interfaces can be included anywhere in the region. An electrode is defined as a line segment along which the potential is held at a given value. A dielectric interface is defined as a line across which the normal component of the electric displacement is held constant. The boundary conditions on the edge of the rectangle can be given value, zero normal gradient or periodic in the x-direction. In the y-direct ... Versions of this program held in the CPC repository in Mendeley Data ACDB_v1_0; POT4A; 10.1016/0010-4655(85)90017-7 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/r3twzy6s7t
title: High-resolution seamless construction of XCO2 in China based on OCO-2 remote sensing data

description: Using multi-source data, including OCO2-XCO2 data, ERA5 meteorological data, MODIS vegetation index data, elevation data, population data and carbon emission data, taking into account time characteristics, the optimal model is selected by comparing multiple machine learning models. Generate XCO₂ data sets with full daily coverage of 0.05° for the China region from 2015 to 2022.