cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19270952.v1
title: Evaluating the effectiveness of integrating digital technology into orthodontic cephalometric measurement teaching

description: The original results of the pedagogical experiments integrating the digital technology into the cephalometric measurement teaching.
DOI: 10.1285/i20705948v13n2p413
title: Properties of the Correlation Matrix Implied by a Recursive Path Model using the Finite Iterative Method

description: The present paper announces and demonstrates some useful properties of the impliedcorrelation matrix built by the Finite Iterative Method (Elhadri and Hanafi,2015, 2016; Elhadri et al., 2019) The most important property is that the impliedcorrelation matrix is affine for each of its parameters. In other words, the firstderivative with respect to each parameter does not depend on this parameter. Moreover,two properties affirm that the first and the second derivatives can be builtiteratively using the previous property. The final property shows that the secondderivatives with respect to every pair ofparameters in the same structural equationare null. These properties are very important in the sense that they can be used toconstruct a new computational approach to estimate recursive model parameters.These findings can be exploited in the estimation stage implementation, especiallyin the computation of the Newton Raphson algorithm to make the first and the secondderivatives of the discrepancy function more explicit and simplistic.
DOI: 10.5281/zenodo.5813527
title: GIS Protocol for Multy-Scale Emerging Hot Spot Analysis

description: This GIS protocol is primarily intended as supplementary material to the article (Štular et al., 2022). The article contains important contextual information about its intended use. In short, this GIS protocol was developed for the purposes of archaeological regional analysis of spatial data. The data are provided elsewhere in spreadsheet format (Štular et al., 2021). Data in GIS format are included in this repository. The GIS protocol can be used with any relevant data for any purpose as long as the data format matches the format of the included data. Includes GIS protocol (textual description) and GIS data in *.shp format.
description: Funding agency: Slovenian Research Agency (research core funding No. J6-9450)
DOI: 10.5281/zenodo.6583119
title: An inventory of school buildings in Central Sulawesi (Indonesia) developed through a mixed-mode data collection approach

description: Urban disaster risk management and reduction requires the development and periodic updating of regional building inventories. However, the development of such inventories can be very cost-intensive and time-consuming, making this a challenging task, particularly for low- and middle-income countries. We used a combination of side-walk and remote survey methods to develop an inventory of 2536 school buildings in Central Sulawesi, Indonesia. The Central Sulawesi region was affected by the 28th September 2018 Palu earthquake. The moment magnitude (Mw) 7.5 earthquake caused intense ground shaking in the epicentral area, triggering liquefaction, tsunami and major landslides, leading to over 4,000 fatalities and 165,000 displaced people. At least 1299 schools were reported to have been damaged or collapsed, affecting about 184,000 students. The developed inventory includes information on location, number of stories, occupancy characteristics (building use and population), age, type of lateral load resisting systems, building materials, structural vulnerabilities, and structural conditions following the 2018 earthquake. The developed database can be used in pre-event/long-term risk analysis and management, post-event/near-real-time loss estimation, and regional-level decision-making on school assets and related policies. The database has been made available for public use and can be readily harmonised with similar databases for other regions. This data repository also contains information on interviews with 30 school principals in the region. The interview details the damage states and functional recovery trajectory of school buildings in the 30 schools.
DOI: 10.5281/zenodo.6587903
title: Single-cell datasets for temporal gene expression integration

description: Contains loom files and preprocessed adata objects to compare methods for temporal gene expression integration. Loom files can be accessed using the 'read' function in Scvelo. Preprocessed adata objects can be accessed using the 'read_h5ad' function in Scanpy. The raw single-cell RNA sequencing datasets can be found under the following accession codes. Mouse embryonic cell cycle dataset from Ref. (https://doi.org/10.1038/nbt.3102) was originally downloaded from ArrayExpress with the accession code E-MTAB-2805 Hematopoiesis differentiation dataset from Ref. (https://doi.org/10.1182/blood-2016-05-716480) was originally downloaded from the Gene Expression Omnibus with the accession code GSE81682 NKT cell differentiation dataset from Ref. (https://doi.org/10.1038/ni.3437) was originally downloaded from the Gene Expression Omnibus with the accession code GSE74596. Hematopoiesis differentiation dataset from Ref. (https://doi.org/10.1038/nature19348) was originally downloaded from the Gene Expression Omnibus with the accession codes GSE70236, GSE70240, GSE70244 LPS stimulation dataset from Ref. (https://doi.org/10.1016/j.cels.2017.03.010) was originally downloaded from the Gene Expression Omnibus with the accession code GSE94383. INF-gamma stimulation dataset from Ref. (https://doi.org/10.1038/s41587-020-00803-5) was originally downloaded from the Gene Expression Omnibus with the accession code GSE161465. AML chemotherapy dataset from Ref. (https://doi.org/10.1038/s41591-018-0233-1) was originally downloaded from the Gene Expression Omnibus with the accession code GSE116481. AML diagnosis/relapse dataset from Ref. (https://doi.org/10.1038/s41375-021-01338-7) was originally downloaded from the Gene Expression Omnibus with the accession code GSE126068. MS case control PBMC and CSF datasets from Ref. (https://doi.org/10.1038/s41467-019-14118-w) was originally downloaded from the Gene Expression Omnibus with the accession code GSE138266.
DOI: 10.6084/m9.figshare.14727231
title: A multi-sensor human gait dataset captured through an optical system and inertial measurement units

description: This multi-sensor gait dataset comprises inertial and optical motion data from 25 subjects free of lower-limb injury, aged between 18 and 47 years. A smartphone and an IMU were attached to one of the subject's legs to capture accelerometer data, and 42 reflexive markers were taped over the whole body to record three-dimensional trajectories. The participants were instructed to walk on a straight-level walkway at their normal pace. Ten trials for each participant were recorded and preprocessed in each of two sessions, performed on different days. This amounts to 500 trials of three-dimensional trajectories, 500 trials of accelerations from the IMU, and 500 trials of accelerations from the smartphone.
DOI: 10.6084/m9.figshare.19920410.v4
title: Barriers to participation in research as perceived by medical students _Abeer Atta Elmannan et al,.sav

description: A cross-sectional survey was carried out to investigate students` views about research, and to identify the barriers preventing them from participation in research projects . The study targeted Year 4 and Year 5 medical students in the College of Medicine in Qassim University. A total 230 students particiapted in the study. Submitted responses were exported from Google forms to MS Excel 2010 for data cleaning and coding. Subsequently, the dataset was sent to SPSS 24.0 (SPSS Inc., Chicago, IL) for statistical analysis. Descriptive statistics was used to present categorical data in frequencies and proportions The perceptions of students were assessed using a 16-item questionnaire. The mean scores of students` perceptions were compared between students using Mann-Whitney test .Factors associated with students` perception of research barriers were analyzed using four separate logistic regression models <br> The an online questionnaire which was used in this study was adapted from a previous study undertaken by Achi <em>et al.</em>, with permission from the authors .
DOI: 10.17043/palmtag-2022-spatial-1
title: A high spatial resolution soil carbon and nitrogen dataset for the northern permafrost region
DOI: 10.5281/zenodo.6258085
title: The bulk parameterizations of turbulent air-sea fluxes in NEMO4: the origin of Sea Surface Temperature differences in a global model study

description: This repository contains the code and the data used to produce the results of "The bulk parameterizations of turbulent air-sea fluxes in NEMO4: the origin of Sea Surface Temperature differences in a global model study" a discussion paper by G. Bonino, D. Iovino, L. Brodeau, S. Masina submitted to Geoscientific Model Development. - DATA.tar contains the 5 days model outputs to produce the figures in the manuscript. - CODE.tar contains the code and the namelists to run the experiments. The namelists and the modified code for run each experiments are available in the subfolder CODE/cfgs/.
DOI: 10.5281/zenodo.6513444
title: Replication Package for the Paper: "Potential Technical Debt and Its Resolution in Code Reviews: An Exploratory Study of the OpenStack and Qt Communities"

description: This is the replication package for the paper: "Potential Technical Debt and Its Resolution in Code Reviews: An Exploratory Study of the OpenStack and Qt Communities", including the dataset and its description (README.md): <strong>PTD-related Comments in Code Review and Data Extraction Results.xlsx</strong> is the dataset of our paper, which contains 2,030 review comments collected from the Nova project and Neutron project of OpenStack community. Among all the review comments, 163 review comments indicate PTD. For the rows of review comments that are related to PTD, we filled them with blue color as an indicator. <strong>README.md</strong>
DOI: 10.5281/zenodo.6581077
title: Cartesian coordinates used for Radical Addition and H Abstraction Reactions in Ethane, Ethylene and Acetylene: A Gateway for Ethyl and Vinyl Bearing Molecules in the Interstellar Medium

description: Set of cartesian coordinates for reactants, pre-reactant complexes, transition states and products for the reactions presented in the manuscript "Cartesian coordinates used for Radical Addition and H Abstraction Reactions in Ethane, Ethylene and Acetylene: A Gateway for Ethyl and Vinyl Bearing Molecules in the Interstellar Medium". The energy level employed in the optimisation was UMN15-D3BJ/def2-TZVP using a grid=ultrafine and the dispersion correction parameters recommended in Goerigk et al 2017 (https://pubs.rsc.org/en/content/articlelanding/2017/cp/c7cp04913g), all geometries and energies were obtained using Gaussian16 interfaced to ChemShell. Edit: The comment line of every structure includes its electronic energy (in Eh) and the Zero Point Vibrational Energy (in Eh).
DOI: 10.5281/zenodo.6941502
title: Bulk NGS/allele quantification - Highly efficient generation of isogenic pluripotent stem cell models using prime editing

description: This file contains sequencing results for bulk NGS and amplicons covering specific regions of interest related to prime editing of hPSCs.
DOI: 10.5281/zenodo.6941599
title: Highly efficient generation of isogenic pluripotent stem cell models using prime editing - Datasets

description: This collection contains the following datasets: 1. AAVS1 knock-in genotyping 2. aCGH karyotyping 3. Tabular datasets for associated graphical figures
DOI: 10.5523/bris.fn4ujbvbe4nr2eji3icdzvp65
title: GC-QTOF MS data from Hebridean crannogs

description: GC-QTOF MS data from four Hebridean Neolithic crannogs (Loch Langhabat, Loch Bhorgastail, Loch Arnish and Loch an Duna) as well as four sediment samples from Loch Bhorgastail
DOI: 10.4119/unibi/2674041
title: ETACE Virtual Appliance

description: The intention behind the ETACE Virtual Appliance is to make every step related to the initialization, simulation and analysis of the Eurace@Unibi model as easy as possible. Thus, it is meant (i) to ensure the reproducibility of results, (ii) as a form of model documentation and communication, (iii) to heighten the credibility of the model. The Virtual Appliance is a stand-alone Linux-based virtual machine that provides a full suite of programmes for (large-scale) agent-based modelling and simulation. It builds on the core Flame modelling environment, adding programs such as a Graphical User Interface, an Editor for agent-based model design and an integrated solution for data visualisation using R. Code of the Eurace@Unibi Model (v1.0) is included to reproduce the results of various publications. Documentation of all programs and models are included.
DOI: 10.5281/zenodo.4536377
title: R&D Dataset for LHC Olympics 2020 Anomaly Detection Challenge

description: This is the first R&D dataset for the LHC Olympics 2020 Anomaly Detection Challenge. It consists of 1M QCD dijet events and 100k W'-&gt;XY events, with X-&gt;qq and Y-&gt;qq. The W', X, and Y masses are 3.5 TeV, 500 GeV and 100 GeV respectively. The events are produced using Pythia8 and Delphes 3.4.1, with no pileup or MPI included. They are selected using a single fat-jet (R=1) trigger with pT threshold of 1.2 TeV. The events are randomly shuffled together, but for the purposes of testing and development, we provide the user with a signal/background truth bit for each event. Obviously, the truth bit will not be included in the actual challenge. These events are stored as pandas dataframes saved to compressed h5 format. For each event, all Delphes reconstructed particles in the event are assumed to be massless and are recorded in detector coordinates (pT, eta, phi). More detailed information such as particle charge is not included. Events are zero padded to constant size arrays of 700 particles, with the truth bit appended at the end. The array format is therefore (Nevents=1.1M, 2101). For more information, including an example Jupyter notebook illustrating how to read and process the events, see the official LHC Olympics 2020 webpage. https://lhco2020.github.io/homepage/ <strong>UPDATE May 18 2020</strong> We have uploaded a second signal dataset for R&D, consisting of 100k W'-&gt;XY with X,Y-&gt;qqq (i.e. 3-prong substructure). Everything else about this signal dataset (particle masses, trigger, Pythia configuration, detector simulation) is the same as the previous one described above. <strong>UPDATE November 23 2020</strong> We now include high-level feature files for the background and 2-prong signal (events_anomalydetection_v2.features.h5) and for the 3-prong signal (events_anomalydetection_Z_XY_qqq.features.h5). To produce the features, we have clustered every event into R=1 jets using the anti-kT algorithm. The features (calculated using fastjet plugins) are the 3-momenta, invariant masses, and n-jettiness variables tau1, tau2 and tau3 for the highest pT jet (j1) and the second highest pT jet (j2): 'pxj1', 'pyj1', 'pzj1', 'mj1', 'tau1j1', 'tau2j1', 'tau3j1', 'pxj2', 'pyj2', 'pzj2', 'mj2', 'tau1j2', 'tau2j2', 'tau3j2' The rows (events) in each feature file should be ordered exactly the same as in their corresponding raw event file. For convenience, we have also included the label (1 for signal and 0 for background) as an additional column in the first feature file (events_anomalydetection_v2.features.h5). <strong>UPDATE February 11 2021</strong> We have included the Delphes detector card and the Pythia8 command files used to produce the R&D datasets.
DOI: 10.6084/m9.figshare.20372871.v1
title: Data for article: Sensitivities of general circulation and waves to horizontal subgrid-scale diffusion in long-term time-integrations of a dynamical core for Venus

description: We published the data presented in our paper "Sensitivities of general circulation and waves to horizontal subgrid-scale diffusion in long-term time-integrations of a dynamical core for Venus (Yamamoto & Takahashi)". The details of the simulation and output data are described in the paper, which is available from Masaru Yamamoto (yamakatu@kyudai.jp).
DOI: 10.6084/m9.figshare.20555802.v1
title: PRISMA-ScR-Fillable-Checklist_Manuscript 123331.pdf

description: PRISMA-ScR, Checklist for the article entitled <em>Smartphone applications are used for self-management, telerehabilitation, evaluation and data collection in low back pain healthcare: A scoping review. </em>
DOI: 10.5066/f7707zj6
title: Cottonwood Lake Study Area - Water Surface Elevations

description: This dataset contains water surface elevations for the wetlands in the Cottonwood Lake Study Area, Stutsman County, North Dakota, 1979 through 2015.
DOI: 10.5281/zenodo.6797894
title: BepiColombo Mio MIA Data During the First Mercury Flyby

description: This data set includes ion energy-time spectrograms obtained by MIA during BepiColombo Mio's first Mercury flyby in units of differential energy flux (eV/cm^2/s/sr/eV).
DOI: 10.15126/smg.21/2
title: Surrey Cross-linguistic Database on Defectiveness

description: The term 'defectiveness' refers to gaps in inflectional paradigms — specifically,
	gaps which do not appear to follow from natural restrictions imposed by meaning
	or function. The Cross-linguistic Database on Defectiveness looks
	at the prevalence of inflectional defectiveness in a controlled sample of
	genetically and geographically diverse language.
DOI: 10.5067/aqua/airs/data304
title: Aqua AIRS Level 3 Support Daily Product using AIRS and AMSU without HSB V6
DOI: 10.17632/wkv96vcvnj.1
title: Data from: Arctic geese tune migration to a warming climate but still suffer from a phenological mismatch
DOI: 10.5066/f7bp00xq
title: Cottonwood Lake Study Area - Specific Conductance

description: This dataset contains the specific conductance values for all wetlands in the Cottonwood Lake Study Area, Stutsman County, North Dakota, 1992 through 2015.
DOI: 10.5281/zenodo.7040612
title: Impact of negative and positive CO2 emissions on global warming metrics using an ensemble of Earth system model simulations

description: The data provided here has been used to create the figures in the paper submitted to Biogeosciences titled <em>Impact of negative and positive CO2 emissions on global warming metrics using an ensemble of Earth system model simulations.</em>
DOI: 10.5286/isis.e.rb2190080
title: Structure and proton locations in the novel ionic conductor Sr3V2O8
DOI: 10.5517/cc584yh
title: CCDC 156796: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, M.Amon|2001|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20677689.v4
title: Data of Figure 5 and Figure 7

description: The paper presents a diagnostic complex for plankton studies using the miniDHC (digital holographic camera). Its capabilities to study the rhythmic processes in plankton ecosystems were demonstrated using the natural testing in Lake Baikal in summer. The results of in situ measurements of plankton to detect the synchronization of collective biological rhythms with medium parameters are presented and interpreted. The most significant rhythms in terms of the correlation of their parameters with medium factors are identified. The study shows that the correlation with water temperature at the mooring site has the greatest significance and reliability. The results are verified with biodiversity data obtained by the traditional mesh method. The experience and results of the study can be used for the construction of a stationary station to monitor the ecological state of the water area through the digitalization of plankton behavior.
DOI: 10.23728/fmi-b2share.37e9742a67b8415e8f8102a8d9757f6b
title: Data and code for the manuscript "Mapping the dependence of BC radiative forcing on emission region and season" by Petri Räisänen et al. (submitted to ACP)

description: This dataset presents results from experiments, in which the dependence of black carbon (BC) radiative forcing on emission location and season has been systematically evaluated with the NorESM1-Happi climate model. Also provided are GrADS scripts and fortran programs employed to generate the results in the manuscript (Räisänen et al. 2022, submitted to ACP) in which these data are used. A related resource (a fortran-based tool for estimating the BC global-mean radiative forcing and associated temperature response based on the region and annual or monthly BC emission rates given by the user) is provided at https://doi.org/10.5281/zenodo.6461647 (Räisänen 2022). REFERENCE TO THE MANUSCRIPT (please refer to the final accepted version if/when the paper will be accepted!): Räisänen, P., Merikanto, J., Makkonen, R., Savolahti, M., Kirkevåg, A., Sand, M., Seland, Ø., and Partanen, A.-I.: Mapping the dependence of BC radiative forcing on emission location and season, Atmos. Chem. Phys. Discuss. [preprint], https://doi.org/10.5194/acp-2022-288, in review, 2022. REFERENCE TO THE TOOL AVAILABLE AT ZENODO: Räisänen, Petri: BC radiative forcing and climate response tool, version 1.0.0, Zenodo (code), https://doi.org/10.5281/zenodo.6461647, 2022.
description: NorESM1-Happi (Graff et al., https://doi.org/10.5194/esd-10-569-2019) was run at a horizontal resolution of ca. 1.9 x 2.5 deg (144 x 96 grid points) with 26 levels in the vertical. The model was run for years 2012-2017, and data is provided for 2013-2017. The experiments used prescribed sea surface temperature and sea ice. The model aerosol scheme was run in an offline mode, which means that the meteorological conditions are not influenced by the assumed aerosol emissions. This allowed for an essentially noise-free evaluation of the radiative forcing (RF) associated with changed BC emissions. To investigate how the BC RF depends on emission region and season, a very large number of experiments (960) was made, in which a fixed BC emission rate (1.E-12 kg m-2 s-1) was assumed separately for 192 regions (ca. 11.4 x 30 deg latitude-longitude boxes) and for five seasonal distributions of emissions. Evaluation of the methodology given in the manuscript showed that this approach works reasonably well for the BC direct RF and for the RF due to BC in snow, but not for the BC indirect effects on clouds. It should also be understood that NorESM1-Happi, like any climate model, is subject to model-specific biases that may influence the derived BC RF.
description: The contents of the data files are described in the file "README_data.txt". The contents of the file containing code "fortran_programs_and_GrADS_scripts.zip" are described in "README_code.txt" as well as in README files included in the zip file. The terms of use for the data and the code are given in the files "License_data.txt" and "License_code.txt", respectively.
DOI: 10.5281/zenodo.4439415
title: Datasets associated with the publication of the "satuRn" R package

description: On this Zenodo link, we share the data that is required to reproduce all the analyses from our publication "satuRn: Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications". This repository includes input transcript-level expression matrices and metadata for all datasets, as well as intermediate results and final outputs of the respective DTU analyses. For a more elaborate description of the data, we refer to the companion GitHub for our publications; https://github.com/statOmics/satuRnPaper. Note that this is version 1.0.2 of the data (uploaded on 2021-01-14). If any changes were to be made to the datasets in the future, this will also be communicated on our companion GitHub page.
DOI: 10.5523/bris.aczmplxdadnt2rcnhckkplue0
title: Does Narrative Drive Dynamic Attention to a Prolonged Stimulus?

description: This is the data related to a paper under review by Hinde, Smith and Gilchrist