cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qjjfwr
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidagathis sessilifolia (Pohl) Kameyama ex Wassh. & J.R.I.Wood"
 ]
}

 The dataset includes 360 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023168-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.467ncv
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.6_1",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Lynx rufus (Schreber, 1777)",
 "Year 2000-2024"
 ]
}

 The dataset includes 428 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023169-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/r42234r4z
title: Data from: Developmental exposure of rats to the flame retardant, triphenyl phosphate, causes long-lasting neurobehavioral and neurochemical dysfunction

description: Background: Human exposures to organophosphate flame retardants result from their use as additives in numerous consumer products. These agents are replacements for brominated flame retardants but have not yet faced similar scrutiny for developmental neurotoxicity. We examined a representative organophosphate flame retardant, triphenyl phosphate (TPP) and its potential effects on behavioral development and dopaminergic function. 

Methods: Female Sprague–Dawley rats were given low doses of TPP (16 or 32 mg/kg/day) via subcutaneous osmotic minipumps, begun preconception and continued into the early postnatal period. Offspring were administered a battery of behavioral tests from adolescence into adulthood, and littermates were used to evaluate dopaminergic synaptic function. 

Results: Offspring with TPP exposures showed increased latency to begin eating in the novelty-suppressed feeding test, impaired object recognition memory, impaired choice accuracy in the visual signal detection test, and sex-selective effects on locomotor activity in adolescence (males) but not adulthood.  Male, but not female, offspring showed marked increases in dopamine utilization in the striatum, evidenced by an increase in the ratio of the primary dopamine metabolite (3,4-dihydroxyphenylacetic acid) relative to dopamine levels. 

Conclusions: These results indicate that TPP has adverse effects that are similar in some respects to those of organophosphate pesticides, which were restricted because of their developmental neurotoxicity.
DOI: 10.15468/dl.kfz2a6
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphurus minor Ginsburg, 1951",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023171-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaqj6z
title: Occurrence Download

description: A dataset containing 79200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platalea minor Temminck & Schlegel, 1849"
 ]
}

 The dataset includes 79200 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023170-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g23xts
title: Occurrence Download

description: A dataset containing 17786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callophrys rubi (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 17786 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023172-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9cpya
title: Occurrence Download

description: A dataset containing 5278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-82.65929 42.49383,-81.69223 42.50602,-81.65917 43.43134,-82.14683 43.251,-82.46918 43.01576,-82.65929 42.49383))",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 5278 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023173-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh7b4r
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-89.90427 -46.75860,-56.09573 -46.75860,-56.09573 -33.24140,-89.90427 -33.24140,-89.90427 -46.75860))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ercilla syncarpellata Nowicke"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023174-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/4cd0-ee95
title: EM304 Water Column Sonar Data Collected During EX2301
DOI: 10.5284/1124577
title: Images from a Structural Watching Brief at Jagger Green Hall, Stainland Historic Township, West Yorkshire, 2021

description: This collection comprises images from a structural watching brief at Jagger Green Hall, Stainland historic township, West Yorkshire carried out by Stephen Haigh Buildings Archaeologist between February and April 2021. Jagger Green Hall is dated to 1703 but has earlier origins, and comprises a stone-built yeoman-clothier's house, with lobby-entry plan, and rear wing containing a kitchen and textile shop.
DOI: 10.15468/dl.m3jbwx
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-44.83731 29.59973,-4.16533 29.59973,-4.16533 51.06958,-44.83731 51.06958,-44.83731 29.59973))",
 "TaxonKey is Hygophum taaningi Becker, 1965"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023175-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5n4af7
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngnathus springeri Herald, 1942",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 158 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023176-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cvsvf
title: Occurrence Download

description: A dataset containing 4184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Digitaria insularis (L.) Fedde"
 ]
}

 The dataset includes 4184 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023177-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1124617
title: Images from a Watching Brief North of The Clock House, Watling Street, Little Brickhill, Milton Keynes, July 2023

description: This collection comprises site photographs from an archaeological watching brief undertaken by Network Archaeology in July 2023, in advance of the construction of a dwelling and hard landscaping at land to the north of The Clock House, Little Brickhill, Milton Keynes.
DOI: 10.15468/dl.fuqhef
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-88.40427 -41.75860,-54.59573 -41.75860,-54.59573 -28.24140,-88.40427 -28.24140,-88.40427 -41.75860))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galium trichocarpum DC."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023179-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vapgmt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arapaima gigas Lundberg & Chernoff, 1992"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023178-241126133413365/datasets/export for details.
DOI: 10.15468/dl.k9akkp
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Neonates tagged off Brazil (aggregated per 1-degree cell)"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023180-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrtmsn
title: Occurrence Download

description: A dataset containing 22903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xyrichtys splendens Castelnau, 1855",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22903 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/26039299
title: Data for "Defining and Conceptualizing Technology-Facilitated Abuse: A Global Delphi Study"

description: This data relates to the paper "Defining and Conceptualizing Technology-Facilitated Abuse: A Global Delphi Study", which is based on a study conducted by the Gender and Tech Research Lab at UCL Computer Science. The study is looking to define and conceptualise Technology-Facilitated Abuse (TFA), based on a global sample of experts.
DOI: 10.5522/04/26039299.v1
title: Data for "Defining and Conceptualizing Technology-Facilitated Abuse: A Global Delphi Study"

description: This data relates to the paper "Defining and Conceptualizing Technology-Facilitated Abuse: A Global Delphi Study", which is based on a study conducted by the Gender and Tech Research Lab at UCL Computer Science. The study is looking to define and conceptualise Technology-Facilitated Abuse (TFA), based on a global sample of experts.
DOI: 10.6084/m9.figshare.27165195
title: Quantification of Vaccine Waning as a Challenge Effect

description: Knowing whether vaccine protection wanes over time is important for health policy and drug development. However, quantifying waning effects is difficult. A simple contrast of vaccine efficacy at two different times compares different populations of individuals: those who were uninfected at the first time versus those who remain uninfected until the second time. Thus, the contrast of vaccine efficacy at early and late times can not be interpreted as a causal effect. We propose to quantify vaccine waning using the challenge effect, which is a contrast of outcomes under controlled exposures to the infectious agent following vaccination. We identify sharp bounds on the challenge effect under nonparametric assumptions that are broadly applicable in vaccine trials using routinely collected data. We demonstrate that the challenge effect can differ substantially from the conventional vaccine efficacy due to depletion of susceptible individuals from the risk set over time. Finally, we apply the methods to derive bounds on the waning of the BNT162b2 COVID-19 vaccine using data from a placebo-controlled randomized trial. Our estimates of the challenge effect suggest waning protection after 2 months beyond administration of the second vaccine dose. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.27165195.v1
title: Quantification of vaccine waning as a challenge effect

description: Knowing whether vaccine protection wanes over time is important for health policy and drug development. However, quantifying waning effects is difficult. A simple contrast of vaccine efficacy at two different times compares different populations of individuals: those who were uninfected at the first time versus those who remain uninfected until the second time. Thus, the contrast of vaccine efficacy at early and late times can not be interpreted as a causal effect. We propose to quantify vaccine waning using the challenge effect, which is a contrast of outcomes under controlled exposures to the infectious agent following vaccination. We identify sharp bounds on the challenge effect under non-parametric assumptions that are broadly applicable in vaccine trials using routinely collected data. We demonstrate that the challenge effect can differ substantially from the conventional vaccine efficacy due to depletion of susceptible individuals from the risk set over time. Finally, we apply the methods to derive bounds on the waning of the BNT162b2 COVID-19 vaccine using data from a placebo-controlled randomized trial. Our estimates of the challenge effect suggest waning protection after 2 months beyond administration of the second vaccine dose.
DOI: 10.6084/m9.figshare.27165195.v2
title: Quantification of Vaccine Waning as a Challenge Effect

description: Knowing whether vaccine protection wanes over time is important for health policy and drug development. However, quantifying waning effects is difficult. A simple contrast of vaccine efficacy at two different times compares different populations of individuals: those who were uninfected at the first time versus those who remain uninfected until the second time. Thus, the contrast of vaccine efficacy at early and late times can not be interpreted as a causal effect. We propose to quantify vaccine waning using the challenge effect, which is a contrast of outcomes under controlled exposures to the infectious agent following vaccination. We identify sharp bounds on the challenge effect under nonparametric assumptions that are broadly applicable in vaccine trials using routinely collected data. We demonstrate that the challenge effect can differ substantially from the conventional vaccine efficacy due to depletion of susceptible individuals from the risk set over time. Finally, we apply the methods to derive bounds on the waning of the BNT162b2 COVID-19 vaccine using data from a placebo-controlled randomized trial. Our estimates of the challenge effect suggest waning protection after 2 months beyond administration of the second vaccine dose. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.15468/dl.c88njj
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anarchias similis (Lea, 1913)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 338 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/b88535ywt8.1
title: Sniffer restricts arboviral brain infections by regulating ROS levels and protecting blood-brain barrier integrity in Drosophila and mosquitoes

description: Original immunofluorescence images.
DOI: 10.17632/2m55rh96kk.1
title: Supplementary material to: Don’t forget the dams! Dairy cows’ responses to two separation methods after 3 months of cow-calf contact

description: Supplementary material to the following publication: Vogt, A., Waiblinger, S., Palme, R., König von Borstel, U. & Barth, K. (TBC) Don’t forget the dams! Dairy cows’ responses to two separation methods after 3 months of cow-calfcontact. Journal of Dairy Science. TBC.

Abstract 
Weaning and separation remain among some of the biggest challenges for cow-calf contact systems, making the development of practical and low stress separation methods mandatory for future success of these systems. This study aimed to compare behavioral and physiological responses of dairy cows to separation from their calves after 3 months of full-time contact with either the two-step method (NF, 2 wks full-time contact while calves wore a nose flap, 1 wk fence-line contact before total separation, n=18) or by gradual reduction of contact time between cow and calf (GR, 1 wk half day contact, 1 wk morning contact, 1 wk fence-line contact before total separation, n=18). Vocalizations and searching behavior were observed on 4 days/wk from 1 wk before separation until 1 wk after total separation. During the same period, lying behavior and rumination time was automatically assessed via accelerometers and pressure sensors. Fecal and blood samples were collected twice/wk from day -1 till +23 relative to separation start for analysis of fecal cortisol metabolites and the immune response. Milk yield in the parlor was continuously recorded. Statistical analysis was conducted using linear mixed effects models. We found no difference between the two separation methods in any of the examined behavioral and physiological response variables. However, a significant increase in vocalizations and searching behavior compared to baseline was present with both methods. Further, there was a transient increase in physiological distress markers and a short-lived retention of milk yield at initiation of treatments, indicating that both methods induced distress for the cows. Descriptively, there were large inter-individual differences between cows as well as a different temporal distribution in occurrence of behavioral responses, as GR cows vocalized most frequently during the week with fence-line contact and after total separation from the calf, while NF cows reacted strongest during the 2 wks while calves wore the nose flap. Milk yield was higher in NF than GR cows during the 2 wks while GR calves had time-restricted access to their dams and NF calves were prevented from suckling, but showed no difference afterwards anymore. However, similar evening milk yields of GR cows in the weeks with half day and morning contact, indicated that the weekly reductions in contact time worked in a rather stepwise than gradual manner, which warrants further improvement of the GR method. Taken together, results showed that cows experienced distress during separation with the GR method, when implemented over 3 wks in 3 steps, as well as with the NF method, but differences between individuals were considerable.
DOI: 10.17632/2m55rh96kk.2
title: Supplementary material to: Don’t forget the dams! Dairy cows’ responses to two separation methods after 3 months of cow-calf contact

description: Supplementary material to: Vogt, A., Waiblinger, S., Palme, R., König von Borstel, U. & Barth, K. (TBC) Don’t forget the dams! Dairy cows’ responses to two separation methods after 3 months of cow-calf contact. Journal of Dairy Science. https://doi.org/10.3168/jds.2024-25293.

Abstract: Weaning and separation remain among some of the biggest challenges for cow-calf contact systems, making the development of practical and low stress separation methods mandatory for future success of these systems. This study aimed to compare behavioral and physiological responses of dairy cows to separation from their calves after 3 mo of full-time contact with either the two-step method (NF, 2 wks full-time contact while calves wore a nose flap, 1 wk fence-line contact before total separation, n=18) or by gradual reduction of contact time between cow and calf (GR, 1 wk half day contact, 1 wk morning contact, 1 wk fence-line contact before total separation, n=18). Vocalizations and searching behavior were observed on 4 d/wk from 1 wk before separation until 1 wk after total separation. During the same period, lying behavior and rumination time was automatically assessed via accelerometers and pressure sensors. Fecal and blood samples were collected twice/wk from day -1 till +23 relative to separation start for analysis of fecal cortisol metabolites and the immune response. Milk yield in the parlor was continuously recorded. Statistical analysis was conducted using linear mixed effects models. We found no difference between the two separation methods in any of the examined behavioral and physiological response variables. However, a significant increase in vocalizations and searching behavior compared to baseline was present with both methods. Further, there was a transient increase in physiological distress markers and a short-lived retention of milk yield at initiation of treatments, indicating that both methods induced distress for the cows. Descriptively, there were large inter-individual differences between cows as well as a different temporal distribution in occurrence of behavioral responses, as GR cows vocalized most frequently during the week with fence-line contact and after total separation from the calf, while NF cows reacted strongest during the 2 wks while calves wore the nose flap. Milk yield was higher in NF than GR cows during the 2 wks while GR calves had time-restricted access to their dams and NF calves were prevented from suckling, but showed no difference afterwards anymore. However, similar evening milk yields of GR cows in the weeks with half day and morning contact, indicated that the weekly reductions in contact time worked in a rather stepwise than gradual manner, which warrants further improvement of the GR method. Taken together, results showed that cows experienced distress during separation with the GR method, when implemented over 3 wks in 3 steps, as well as with the NF method, but differences between individuals were considerable.
DOI: 10.17632/6ttfftp6xn
title: Data for GLUT9 p.V114L

description: Research data used in paper. More detailed data is avaible on the request.
DOI: 10.17632/6ttfftp6xn.1
title: Data for GLUT9 p.V114L

description: Research data used in paper. More detailed data is avaible on the request.
DOI: 10.17632/bbsnbbpx5k.1
title: DietarydysregulationSCFA_IAV_Revision1

description: Raw data manuscript: "Dietary dysregulation of gut microbial metabolites exacerbates influenza A infection" after Revision (28.11.2024)