cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c1j01/7
title: novel_high_maker_standard_proteins.fasta

description: Predicted proteins of novel genes predicted by the high GC HMM in rice.
DOI: 10.5061/dryad.c1j01/8
title: novel_high_maker_standard_transcripts.fasta

description: Predicted transcripts of novel genes predicted by the high GC HMM in rice.
DOI: 10.5061/dryad.c1j01/9
title: novel_low_maker_standard_genes.gff3

description: Gene annotations of novel genes predicted by the low GC HMM in rice.
DOI: 10.5061/dryad.fj669/1
title: Data fish species

description: Data on fish remains found in the pellets of great cormorants.
DOI: 10.5061/dryad.fj669/3
title: Data propagules

description: Data on propagules found in the pellets of great cormorants.
DOI: 10.5061/dryad.g500m/1
title: Polar_Vortex_Cold_Tolerance__Submitted_Data_07202017

description: Excel file including all individuals analyzed in cold tolerance analyses. Column 1: Individual lizard ID, Column 2: Site of collection, Column 3: Collection Period (Before Vortex - July-August 2013), Early Summer (Late April 2014) Late Summer (July 2014), Column 4: Sex of each individual, Column 5: Critical Thermal Minimum (CTmin), Column 6: average rate of cooling during each CTmin trial.
DOI: 10.5061/dryad.gm073.1
title: Data from: Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population
DOI: 10.5061/dryad.gm073.2/14.2
title: heterozygosity
DOI: 10.5061/dryad.gm073.2/15.2
title: recombination
DOI: 10.5061/dryad.gm073.2/16.2
title: info_marker_gene
DOI: 10.5061/dryad.gm073.2/17.2
title: monomorphism
DOI: 10.5061/dryad.gm073.2/18.2
title: prop_Tx430_distorsion
DOI: 10.5061/dryad.gm073.2/20.2
title: Sorghum Genome

description: Current genome version of sorghum (v3)
DOI: 10.5061/dryad.gm073.2/21.2
title: nam_composite.map
DOI: 10.5061/dryad.m1v40/10
title: correct_sfs

description: A script for correcting SFS using the method described in the original paper
DOI: 10.5061/dryad.m1v40/11
title: README

description: a README file
DOI: 10.5061/dryad.m1v40/8
title: THIN_table_2

description: A script for thinning ANGSD genotype output
DOI: 10.5061/dryad.m1v40/9
title: angsd2fsc_multipop_04

description: A script for generating grid script to run multiple instances of fatsimcoal2 simultaneously from ANGSD input SFS
DOI: 10.5061/dryad.m5p42/1
title: The Nexus format file

description: The Nexus format file for the maximum parsimony analysis
DOI: 10.5061/dryad.m5p42/2
title: The Nexus format file

description: The Nexus format file for the Bayesian inference analysis
DOI: 10.5061/dryad.mk8ns/1
title: Lohman_et_al_2017_SupplementaryData

description: R scripts, R data files, and CSV files with raw data for counts, meta data, parasite data,
DOI: 10.5061/dryad.n6d50/1
title: Hayashi Hojo Nomura Tsuji 2017 PRSB Attack rate and trophallaxis dataset

description: contains all data of all experiments
DOI: 10.17632/2w7gdrycpc.1
title: Data for: Financial performance and distress profiles. From classification according to financial ratios to compositional classification

description: Data for first illustration x1=Fixed assets; x2=Inventory; x3= Quick assets; x4=Equity; x5=Long term debt; x6=Short term debt; x7=operating expenses; x8=sales NACE code 21.2: Manufacture of pharmaceutical preparations n=110 Spanish and Portuguese firms with all-positive components in 2015.
DOI: 10.17632/2w8p6vggv8.1
title: Data for: Rotational Characterization of Methyl Methacrylate: Internal Dynamics and Structure Determination

description: XIAM input and output files, STRFIT and KRA files, and linelists for methyl methacrylate.
DOI: 10.17632/gn87yzc9jw.1
title: Data for: One disorder out of two orders: synthesis and crystal structures of cation-ordered PbNaF2NO3, anion-ordered Pb2OFNO3, and continuous disordered (Pb, Na)2(O,F)2-deltaNO3 solid solution with Sillén-derived structures

description: Crystallographic information file for Pb2OFNO3, PbNaF2NO3, Pb3NaOF3(NO3)2
DOI: 10.17632/n54wy7nj5t.1
title: Data for: Financial performance and distress profiles. From classification according to financial ratios to compositional classification

description: Data for second illustration x1=Fixed assets; x2=Inventory; x3= Quick assets; x4=Equity; x5=Long term debt; x6=Short term debt; x7=Operating expenses; x8=Sales NACE code 14.1 Manufacture of wearing apparel, except fur apparel. n=809 Spanish and Portuguese firms with all-positive components in 2015.
DOI: 10.5061/dryad.04pj7.1
title: Data from: Contrasting patterns of X-chromosome divergence underlie multiple sex-ratio polymorphisms in stalk-eyed flies
DOI: 10.5061/dryad.04pj7.1/1.1
title: Stalk Eyed Flies SR Genotyping Phenotyping

description: Contains offspring sex ratio phenotype data and X-linked STR genotype data for stalk-eyed flies (Teleopsis dalmanni and Teleopsis whitei).  Also includes X-linked STR genotype data for a series of crosses in Teleopsis dalmanni used to make a genetic map of the X-chromosome.
DOI: 10.5061/dryad.04pj7.2
title: Data from: Contrasting patterns of X-chromosome divergence underlie multiple sex-ratio polymorphisms in stalk-eyed flies
DOI: 10.5061/dryad.04pj7.2/1.2
title: Stalk Eyed Flies SR Genotyping Phenotyping

description: Contains offspring sex ratio phenotype data and X-linked STR genotype data for stalk-eyed flies (Teleopsis dalmanni and Teleopsis whitei).  Also includes X-linked STR genotype data for a series of crosses in Teleopsis dalmanni used to make a genetic map of the X-chromosome.
DOI: 10.5061/dryad.04pj7.2/2.2
title: Teleopsis Sequence Alignments
DOI: 10.5061/dryad.04pj7/2
title: Teleopsis Sequence Alignments
DOI: 10.6084/m9.figshare.12610279
title: Additional file 2 of TeaCoN: a database of gene co-expression network for tea plant (Camellia sinensis)

description: Additional file 2. NCBI-SRA accession numbers of all the RNA-Seq samples used in this study.
DOI: 10.6084/m9.figshare.12610279.v1
title: Additional file 2 of TeaCoN: a database of gene co-expression network for tea plant (Camellia sinensis)

description: Additional file 2. NCBI-SRA accession numbers of all the RNA-Seq samples used in this study.
DOI: 10.6084/m9.figshare.12610286
title: Additional file 3 of Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human

description: Additional file 3: Table S1–3. The summary list of epigenome data downloaded from ENCODE and RoadMap projects for H3K4me3 (Table S1), H3K27ac (Table S2) and H3K36me3 (Table S3).
DOI: 10.6084/m9.figshare.12610286.v1
title: Additional file 3 of Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human

description: Additional file 3: Table S1–3. The summary list of epigenome data downloaded from ENCODE and RoadMap projects for H3K4me3 (Table S1), H3K27ac (Table S2) and H3K36me3 (Table S3).
DOI: 10.6084/m9.figshare.12610292
title: Additional file 5 of Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human

description: Additional file 5: Table S4. The summary list of WGBS samples.
DOI: 10.6084/m9.figshare.12610292.v1
title: Additional file 5 of Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human

description: Additional file 5: Table S4. The summary list of WGBS samples.
DOI: 10.24403/jp.1342381
title: Vorläufiges über Goethe und die Niederen Pflanzen / Dieter Mollenhauer
DOI: 10.6084/m9.figshare.7367417
title: Adiponectin is protective against endoplasmic reticulum stress-induced apoptosis of endothelial cells in sepsis

description: Endoplasmic reticulum (ER) stress is a critical molecular mechanism involved in the pathogenesis of sepsis. Hence, strategies for alleviating this stress may be essential for preventing cardiovascular injuries under sepsis. Adiponectin is secreted by adipocytes and its levels are decreased in sepsis. The purpose of this study was to investigate the protective effects of adiponectin treatment on endothelial cells and its mechanism. Male Wistar rats underwent cecal ligation and puncture (CLP) before being treated with adiponectin (72 and 120 μg/kg). The levels of malondialdehyde (MDA) in plasma, histological structure, and apoptosis of endothelial cells were evaluated. In vitro, human umbilical vein endothelial cells (HUVECs) were treated with adiponectin at 10 and 20 μg/mL for 24 h after stimulation by lipopolysaccharide (LPS). The levels of reactive oxygen species (ROS), ultrastructure, rate of apoptosis, the expression of inositol-requiring enzyme 1α (IRE1α) protein, and its downstream molecules (78 kDa glucose-regulated protein (GRP78), C/EBP homologous protein (CHOP), and caspase-12) were detected. The results showed that the levels of MDA and ROS induced by CLP or LPS stimulation were increased. Furthermore, endothelial cell apoptosis was increased under sepsis. The IRE1α pathway was initiated, as evidenced by activated IRE1α, increased GRP78, and up-regulated CHOP and caspase-12 in HUVECs. Following treatment with adiponectin, the number of apoptotic endothelial cells was markedly decreased. These findings demonstrated that treatment with adiponectin decreased apoptosis of endothelial cells caused by sepsis by attenuating the ER stress IRE1α pathway activated by oxidative stress.
DOI: 10.6084/m9.figshare.7367417.v1
title: Adiponectin is protective against endoplasmic reticulum stress-induced apoptosis of endothelial cells in sepsis

description: Endoplasmic reticulum (ER) stress is a critical molecular mechanism involved in the pathogenesis of sepsis. Hence, strategies for alleviating this stress may be essential for preventing cardiovascular injuries under sepsis. Adiponectin is secreted by adipocytes and its levels are decreased in sepsis. The purpose of this study was to investigate the protective effects of adiponectin treatment on endothelial cells and its mechanism. Male Wistar rats underwent cecal ligation and puncture (CLP) before being treated with adiponectin (72 and 120 μg/kg). The levels of malondialdehyde (MDA) in plasma, histological structure, and apoptosis of endothelial cells were evaluated. In vitro, human umbilical vein endothelial cells (HUVECs) were treated with adiponectin at 10 and 20 μg/mL for 24 h after stimulation by lipopolysaccharide (LPS). The levels of reactive oxygen species (ROS), ultrastructure, rate of apoptosis, the expression of inositol-requiring enzyme 1α (IRE1α) protein, and its downstream molecules (78 kDa glucose-regulated protein (GRP78), C/EBP homologous protein (CHOP), and caspase-12) were detected. The results showed that the levels of MDA and ROS induced by CLP or LPS stimulation were increased. Furthermore, endothelial cell apoptosis was increased under sepsis. The IRE1α pathway was initiated, as evidenced by activated IRE1α, increased GRP78, and up-regulated CHOP and caspase-12 in HUVECs. Following treatment with adiponectin, the number of apoptotic endothelial cells was markedly decreased. These findings demonstrated that treatment with adiponectin decreased apoptosis of endothelial cells caused by sepsis by attenuating the ER stress IRE1α pathway activated by oxidative stress.
DOI: 10.6084/m9.figshare.7367414
title: Oridonin induces growth inhibition and apoptosis in human gastric carcinoma cells by enhancement of p53 expression and function

description: The tumor suppressive role of oridonin, an active compound extracted from Rabdosia rubescens, has been proven in several gastric cancer (GC) cell lines. The present study aimed to evaluate the effect of oridonin on another GC cell line, SNU-216, and explore the potential mechanisms. The viable cell numbers, cell migration, survival fraction, and cell viability were, respectively, evaluated by trypan blue exclusion assay, wound healing assay, clonogenic assay, and CCK-8 assay. Cell apoptosis was determined by flow cytometry assay and western blot. The expression of p53 was inhibited by transient transfection, and the efficiency was verified by western blot. qRT-PCR was performed to measure the mRNA expression of p53. Western blot was used to evaluate the protein expression of apoptosis, DNA damage and p53 function related factors. We found that oridonin significantly inhibited cell proliferation, migration, and survivability, and enhanced cell apoptosis in SNU-216 cells. However, it had no influence on HEK293 cell viability. Oridonin also remarkably enhanced the anti-tumor effect of cisplatin on SNU-216 cells, as it significantly increased apoptotic cells and decreased cell viability. Moreover, the mRNA and protein expression of p53 was significantly up-regulated in oridonin-treated cells, while Mdm2 expression was down-regulated. Furthermore, oridonin enhanced p53 function and induced DNA damage. Knockdown of p53 or employing the caspase inhibitor, Boc-D-FMK, reversed the effect of oridonin on cell viability and apoptosis-related protein expression. The present study demonstrated that oridonin exhibited an anti-tumor effect on GC SNU-216 cells through regulating p53 expression and function.
DOI: 10.6084/m9.figshare.7367414.v1
title: Oridonin induces growth inhibition and apoptosis in human gastric carcinoma cells by enhancement of p53 expression and function

description: The tumor suppressive role of oridonin, an active compound extracted from Rabdosia rubescens, has been proven in several gastric cancer (GC) cell lines. The present study aimed to evaluate the effect of oridonin on another GC cell line, SNU-216, and explore the potential mechanisms. The viable cell numbers, cell migration, survival fraction, and cell viability were, respectively, evaluated by trypan blue exclusion assay, wound healing assay, clonogenic assay, and CCK-8 assay. Cell apoptosis was determined by flow cytometry assay and western blot. The expression of p53 was inhibited by transient transfection, and the efficiency was verified by western blot. qRT-PCR was performed to measure the mRNA expression of p53. Western blot was used to evaluate the protein expression of apoptosis, DNA damage and p53 function related factors. We found that oridonin significantly inhibited cell proliferation, migration, and survivability, and enhanced cell apoptosis in SNU-216 cells. However, it had no influence on HEK293 cell viability. Oridonin also remarkably enhanced the anti-tumor effect of cisplatin on SNU-216 cells, as it significantly increased apoptotic cells and decreased cell viability. Moreover, the mRNA and protein expression of p53 was significantly up-regulated in oridonin-treated cells, while Mdm2 expression was down-regulated. Furthermore, oridonin enhanced p53 function and induced DNA damage. Knockdown of p53 or employing the caspase inhibitor, Boc-D-FMK, reversed the effect of oridonin on cell viability and apoptosis-related protein expression. The present study demonstrated that oridonin exhibited an anti-tumor effect on GC SNU-216 cells through regulating p53 expression and function.
DOI: 10.6084/m9.figshare.12610333
title: Additional file 4 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 4: Table S2. Analysis of GO enrichment for 13,783 common DEGs.
DOI: 10.6084/m9.figshare.12610333.v1
title: Additional file 4 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 4: Table S2. Analysis of GO enrichment for 13,783 common DEGs.
DOI: 10.6084/m9.figshare.12610336
title: Additional file 5 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 5: Table S3. Analysis of GO enrichment from tetrad stage to pollen maturation stage.
DOI: 10.6084/m9.figshare.12610336.v1
title: Additional file 5 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 5: Table S3. Analysis of GO enrichment from tetrad stage to pollen maturation stage.
DOI: 10.6084/m9.figshare.12610339
title: Additional file 6 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 6: Table S4. Analysis of KEGG enrichment of the DEGs.
DOI: 10.6084/m9.figshare.12610339.v1
title: Additional file 6 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 6: Table S4. Analysis of KEGG enrichment of the DEGs.
DOI: 10.6084/m9.figshare.12610342
title: Additional file 7 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 7: Table 5. Analysis of KEGG enrichment in green, purple, yellow and pink modules.
DOI: 10.6084/m9.figshare.12610342.v1
title: Additional file 7 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 7: Table 5. Analysis of KEGG enrichment in green, purple, yellow and pink modules.
DOI: 10.6084/m9.figshare.12610345
title: Additional file 8 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 8: Table S6. Key KEGG pathways genes enriched in five module.
DOI: 10.6084/m9.figshare.12610345.v1
title: Additional file 8 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 8: Table S6. Key KEGG pathways genes enriched in five module.
DOI: 10.6084/m9.figshare.12610348
title: Additional file 9 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 9: Table S7. The primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.12610348.v1
title: Additional file 9 of Characterization and transcriptome analysis of a dominant genic male sterile cotton mutant

description: Additional file 9: Table S7. The primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.13134647
title: Biomarkers and Key Pathways in Atrial Fibrillation Associated with Mitral Valve Disease Identified by Multi-omics Study

description: The iTRAQ technology was used for the proteomics study: the plasma samples from 24 patients were divided into 6 groups (3 chronic atrial fibrillation group and 3 sinus rhythm group), each of these groups contained the plasma from 4 patients. In addition, plasma samples from 12 atrial fibrillation or 12 sinus rhythm patients were used as control groups, respectively.<br>
DOI: 10.6084/m9.figshare.8940404
title: Nature Commun_19-01185A_Source data.xlsx

description: Source data for the paper titled "Asymmetric catalysis mediated by a mirror symmetry-broken helical nanoribbon".
DOI: 10.6084/m9.figshare.12610430
title: Additional file 1 of Weighted correlation network bioinformatics uncovers a key molecular biosignature driving the left-sided heart failure

description: Additional file 1. ENCODE analysis of transcription factors.
DOI: 10.6084/m9.figshare.12610430.v1
title: Additional file 1 of Weighted correlation network bioinformatics uncovers a key molecular biosignature driving the left-sided heart failure

description: Additional file 1. ENCODE analysis of transcription factors.
DOI: 10.6084/m9.figshare.13134728
title: Contrasting latest Permian intracontinental gabbro and Late Triassic arc gabbro–diorite in the Gangdese constrain the subduction initiation of the Neo-Tethys

description: When the Neo-Tethys subduction initiated has been a subject of debate, perhaps due to the lack of reliable evidence. This paper reports geochronological, geochemical, and Hf isotopic data for recently identified gabbro as well as diorite exposed in the Chanv area of the Gangdese in the southernmost margin of the western Lhasa block, western China. Zircon U–Pb dating indicates the Chanv magmatic rocks formed in two stages: latest Permian (gabbro, 254.8 ± 1.5 Ma) and Late Triassic (gabbro, 214.2 ± 2.0 Ma; diorite, 202.8 ± 1.1 Ma). Geochemical and Hf isotopic analyses reveal that the Chanv magmatic rocks of both stages have contrasting characters. The latest Permian gabbro has apparently higher TiO<sub>2</sub> concentrations (&gt; 3 wt.%) than the Late Triassic gabbro (0.86–1.24 wt.%). Although they all are enriched in light rare-earth elements (LREEs), the latest Permian gabbro displays no depletions in Nb and Ta, while the Late Triassic gabbro and diorite are apparently depleted in these two elements. In addition, the zircons from the latest Permian gabbro are all characterized by positive ε<sub>Hf</sub>(t) values whereas those from the Late Triassic gabbro dominantly by negative ε<sub>Hf</sub>(t) values. Conventional plots using multi-elements or elemental ratios all indicate the latest Permian gabbro has inherent resemblance to intraplate oceanic-island basalt (OIB) whereas the Late Triassic gabbro and diorite are of distinct arc affinity. Therefore, The Chanv latest Permian–Late Triassic magmatic rocks testify a switch of the tectonic environment in the southernmost Eurasian margin from latest Permian post-break-up to Late Triassic arc-related setting and thus constrain the initiation of the Neo-Tethys subduction between 255 Ma and 214 Ma.
DOI: 10.6084/m9.figshare.13134728.v1
title: Contrasting latest Permian intracontinental gabbro and Late Triassic arc gabbro–diorite in the Gangdese constrain the subduction initiation of the Neo-Tethys

description: When the Neo-Tethys subduction initiated has been a subject of debate, perhaps due to the lack of reliable evidence. This paper reports geochronological, geochemical, and Hf isotopic data for recently identified gabbro as well as diorite exposed in the Chanv area of the Gangdese in the southernmost margin of the western Lhasa block, western China. Zircon U–Pb dating indicates the Chanv magmatic rocks formed in two stages: latest Permian (gabbro, 254.8 ± 1.5 Ma) and Late Triassic (gabbro, 214.2 ± 2.0 Ma; diorite, 202.8 ± 1.1 Ma). Geochemical and Hf isotopic analyses reveal that the Chanv magmatic rocks of both stages have contrasting characters. The latest Permian gabbro has apparently higher TiO<sub>2</sub> concentrations (&gt; 3 wt.%) than the Late Triassic gabbro (0.86–1.24 wt.%). Although they all are enriched in light rare-earth elements (LREEs), the latest Permian gabbro displays no depletions in Nb and Ta, while the Late Triassic gabbro and diorite are apparently depleted in these two elements. In addition, the zircons from the latest Permian gabbro are all characterized by positive ε<sub>Hf</sub>(t) values whereas those from the Late Triassic gabbro dominantly by negative ε<sub>Hf</sub>(t) values. Conventional plots using multi-elements or elemental ratios all indicate the latest Permian gabbro has inherent resemblance to intraplate oceanic-island basalt (OIB) whereas the Late Triassic gabbro and diorite are of distinct arc affinity. Therefore, The Chanv latest Permian–Late Triassic magmatic rocks testify a switch of the tectonic environment in the southernmost Eurasian margin from latest Permian post-break-up to Late Triassic arc-related setting and thus constrain the initiation of the Neo-Tethys subduction between 255 Ma and 214 Ma.