cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6616241
title: Additional file 1: of Absolute quantitation of microbiota abundance in environmental samples

description: Experiment preparation details: spike sequences, primers sequences, Rhizobium experiment spike output and spike concentration to numbers calculation. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6616241.v1
title: Additional file 1: of Absolute quantitation of microbiota abundance in environmental samples

description: Experiment preparation details: spike sequences, primers sequences, Rhizobium experiment spike output and spike concentration to numbers calculation. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6616109
title: Flow cytometry analysis of mouse spleen cells

description: Flow cytometry analysis of mouse spleen cells
DOI: 10.6084/m9.figshare.6616109.v2
title: Flow cytometry analysis of mouse spleen cells

description: Flow cytometry analysis of mouse spleen cells
DOI: 10.6084/m9.figshare.6616109.v1
title: Untitled Item

description: Flow cytometry analysis of mouse spleen cells
DOI: 10.6084/m9.figshare.6615611
title: Hermetia illucens (Diptera) wing venation photos

description: Images of <i>Hermetia illucens </i>wings used in a geometric morphometric analysis. Please see metadata for information about each individual specimen (e.g. sex, population)<br>
DOI: 10.6084/m9.figshare.6615494
title: Theoretical ribosomal protein mass fingerprint of Listeria seeligeri

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria seeligeri.</i><br><br>
DOI: 10.6084/m9.figshare.6615494.v1
title: Theoretical ribosomal protein mass fingerprint of Listeria seeligeri

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria seeligeri.</i><br><br>
DOI: 10.6084/m9.figshare.6615485
title: Theoretical ribosomal protein mass fingerprint of Listeria monocytogenes

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria monocytogenes.</i>
DOI: 10.6084/m9.figshare.6615485.v1
title: Theoretical ribosomal protein mass fingerprint of Listeria monocytogenes

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria monocytogenes.</i>
DOI: 10.6084/m9.figshare.6615482
title: jointsum

description: Package "jointsum". More descriptions: https://github.com/yangq001/conditional<br>
DOI: 10.6084/m9.figshare.6615482.v1
title: jointsum

description: Package "jointsum". More descriptions: https://github.com/yangq001/conditional<br>
DOI: 10.17608/k6.auckland.6615476
title: Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales: Data and README

description: State-space modelled data and README files associated with Riekkola et al. (2018). Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales. Ecological Indicators, 89, 455-465.<br>AbstractObtaining direct measurements to characterise ecosystem function can be hindered by remote or inaccessible regions. Next-generation satellite tags that inform increasingly sophisticated movement models, and the miniaturisation of animal-borne loggers, have enabled the use of animals as tools to collect habitat data in remote environments, such as the Southern Ocean. Research on the distribution, habitat use and recovery of Oceania’s humpback whales (<em>Megaptera novaeangliae</em>) has been constrained by the inaccessibility to their Antarctic feeding grounds and the limitations of technology. In this multi-disciplinary study, we combine innovative analytical tools to comprehensively assess the distribution and population structure of this marine predator throughout their entire migratory range. We used genotypeand photo-identification matches and conducted a genetic mixed-stock analysis to identify the breeding ground origins of humpback whales migrating past the Kermadec Islands, New Zealand. Satellite tracking data and a state-space model were then used to identify the migratory paths and behaviour of 18 whales, and to reveal their Antarctic feeding ground destinations. Additionally, we conducted progesterone assays and epigenetic aging to determine the pregnancy rate and age-profile of the population. Humpback whales passing the Kermadec Islands did not assign to a single breeding ground origin, but instead came from a range of breeding grounds spanning ∼3500 km of ocean. Sampled whales ranged from calves to adults of up to 67 years of age, and a pregnancy rate of 57% was estimated from 30 adult females. The whales migrated to the Southern Ocean (straight-line distances of up to 7000 km) and spanned ∼4500 km across their Antarctic feeding grounds. All fully tracked females with a dependent calf (n = 4) migrated to the Ross Sea region, while 70% of adults without calves (n = 7) travelled further east to the Amundsen and Bellingshausen Seas region. By combining multiple research and analytical tools we obtained a comprehensive understanding of this wide-ranging, remote population of whales. Our results indicate a population recovering from exploitation, and their feeding ground distribution serves as an indicator of the resources available in these environments. The unexpected Kermadec Islands migratory bottle-neck of whales from several breeding grounds, variable distribution patterns by life history stage and high pregnancy rates will be important in informing conservation and management planning, and for understanding how this, as well as other whale populations, might respond to emerging threats such as climate change.
DOI: 10.17608/k6.auckland.6615476.v1
title: Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales: Data and README

description: State-space modelled data and README files associated with Riekkola et al. (2018). Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales. Ecological Indicators, 89, 455-465.<br>AbstractObtaining direct measurements to characterise ecosystem function can be hindered by remote or inaccessible regions. Next-generation satellite tags that inform increasingly sophisticated movement models, and the miniaturisation of animal-borne loggers, have enabled the use of animals as tools to collect habitat data in remote environments, such as the Southern Ocean. Research on the distribution, habitat use and recovery of Oceania’s humpback whales (<em>Megaptera novaeangliae</em>) has been constrained by the inaccessibility to their Antarctic feeding grounds and the limitations of technology. In this multi-disciplinary study, we combine innovative analytical tools to comprehensively assess the distribution and population structure of this marine predator throughout their entire migratory range. We used genotypeand photo-identification matches and conducted a genetic mixed-stock analysis to identify the breeding ground origins of humpback whales migrating past the Kermadec Islands, New Zealand. Satellite tracking data and a state-space model were then used to identify the migratory paths and behaviour of 18 whales, and to reveal their Antarctic feeding ground destinations. Additionally, we conducted progesterone assays and epigenetic aging to determine the pregnancy rate and age-profile of the population. Humpback whales passing the Kermadec Islands did not assign to a single breeding ground origin, but instead came from a range of breeding grounds spanning ∼3500 km of ocean. Sampled whales ranged from calves to adults of up to 67 years of age, and a pregnancy rate of 57% was estimated from 30 adult females. The whales migrated to the Southern Ocean (straight-line distances of up to 7000 km) and spanned ∼4500 km across their Antarctic feeding grounds. All fully tracked females with a dependent calf (n = 4) migrated to the Ross Sea region, while 70% of adults without calves (n = 7) travelled further east to the Amundsen and Bellingshausen Seas region. By combining multiple research and analytical tools we obtained a comprehensive understanding of this wide-ranging, remote population of whales. Our results indicate a population recovering from exploitation, and their feeding ground distribution serves as an indicator of the resources available in these environments. The unexpected Kermadec Islands migratory bottle-neck of whales from several breeding grounds, variable distribution patterns by life history stage and high pregnancy rates will be important in informing conservation and management planning, and for understanding how this, as well as other whale populations, might respond to emerging threats such as climate change.
DOI: 10.6084/m9.figshare.6615473
title: Theoretical ribosomal protein mass fingerprint of Listeria ivanovii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria ivanovii.<br></i><br>
DOI: 10.6084/m9.figshare.6615473.v1
title: Theoretical ribosomal protein mass fingerprint of Listeria ivanovii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Listeria ivanovii.<br></i><br>
DOI: 10.6084/m9.figshare.6615470
title: AHIUT

description: Package "AHIUT". More descriptions: https://github.com/yangq001/AHIUT<br>
DOI: 10.6084/m9.figshare.6615461
title: SCZ summary statistics for 103 loci

description: LD matrices and Z scores for 103 pruned loci.
DOI: 10.6084/m9.figshare.6615470.v1
title: AHIUT

description: Package "AHIUT". More descriptions: https://github.com/yangq001/AHIUT<br>
DOI: 10.6084/m9.figshare.6615461.v1
title: SCZ summary statistics for 103 loci

description: @font-face { font-family: "宋体"; }@font-face { font-family: "宋体"; }@font-face { font-family: "@宋体"; }@font-face { font-family: "Cambria"; }p.MsoNormal, li.MsoNormal, div.MsoNormal { margin: 0cm 0cm 0.0001pt; text-align: justify; font-size: 12pt; font-family: Cambria; }.MsoChpDefault { font-family: Cambria; }div.WordSection1 { } LD matrices and Z scores for 103 pruned loci.
DOI: 10.23641/asha.6615401
title: Linguistic markers in Parkinson’s disease (Smith et al., 2018)

description: <b>Purpose:</b> Early cognitive symptoms such as word-finding difficulty (WFD) in daily conversation are common in Parkinson’s disease (PD), but studies have been limited by a lack of feasible, quantitative measures. Linguistic analysis, focused on pauses in speech, may yield markers of impairment of cognition and communication in PD. The objective of this study was to evaluate the relationship of linguistic markers in semistructured speech to WFD symptoms and cognitive function in PD.<b>Method: </b>Speech recordings of description of the Cookie Theft picture in 53 patients with PD without dementia and 23 elderly controls were analyzed with Praat software. Montreal Cognitive Assessment (MoCA; Nasreddine et al., 2005), category naming fluency, and confrontation naming tests were administered. Questionnaires rating WFD symptoms and cognitive instrumental activities of daily living were completed. We determined the relationships between (a) pause length and location, (b) MoCA score, and (c) WFD symptoms, using Pearson’s correlations and multivariate regression models.<b>Results:</b> Compared with controls, patients with PD had more pauses within utterances as well as fewer words per minute and a lower percentage of well-formed sentences. Pauses within utterances differed significantly between PD–mild cognitive impairment and normal cognition (<i>p</i> &lt; .001). Words per minute and percentage of well-formed sentences were predictive of MoCA in multivariate regression models. Pauses before verbs were associated with patient-reported severity of WFD symptoms (<i>p</i> = .006).<b>Conclusions:</b> Linguistic markers including pauses within utterances distinguish patients with PD with mild cognitive symptoms from elderly controls. These markers are associated with global cognitive function before the onset of dementia. Pauses before verbs and grammatical markers may index early cognitive symptoms such as WFD that may interfere with functional communication.<br><b>Supplemental Material S1.</b> Baseline characteristics of Parkinson’s disease (PD) with mild cognitive impairment (MCI) and normal cognition (NC). <br><b>Supplemental Material S2.</b> Correlations between clinical, neuropsychological, and linguistic biomarkers and word-finding difficulty (WFD) symptoms.<br><b>Supplemental Material S3.</b> Transcription conventions.<br>Smith, K. M., Ash, S., Xie, S. X., & Grossman, M. (2018). Evaluation of linguistic markers of word-finding difficulty and cognition in Parkinson’s disease. <i>Journal of Speech, Language, and Hearing Research, 61,</i> 1691–1699. https://doi.org/10.1044/2018_JSLHR-L-17-0304
DOI: 10.23641/asha.6615332
title: Naturalistic speech-generating device (Gevarter & Zamora, 2018)

description: <b>Purpose: </b>This article presents a systematic review that aimed to synthesize single-subject–design studies that have examined naturalistic interventions for teaching the expressive use of speech-generating devices (SGDs) to children with complex communication needs. Specifically, this review describes what intervention strategies are most commonly applied in studies with positive effects and minimal methodological flaws and examines the populations and outcomes for which these strategies have been effective.<b>Method:</b> A systematic approach was used to qualitatively code variables of interest to this review. Results were summarized via both visual analysis and effect size methods, and a certainty of evidence methodology was adopted to describe the quality of the evidence.<b>Results: </b>Thirty-two unique studies met inclusion criteria, with 19 having consistent positive results and meeting minimum requirements for certainty of evidence. Although studies used a variety of titles to describe intervention packages (e.g., milieu teaching, interaction strategies), certain strategies were common across studies. These included (a) creating and capturing communication opportunities via methods such as time delay and questioning; (b) providing feedback via methods such as reinforcement of requests, praise, or expansions; (c) prompting (verbal, physical, gestural); (d) modeling; and (e) training communication partners.<b>Conclusions:</b> Findings regarding these intervention components help to provide practical guidelines for naturalistic SGD intervention. Limitations of the current body of research (e.g., need to include more home-based studies and more intermediate to advanced SGDs, need to critically analyze the most critical intervention components) provide suggestions for future research.<br><b>Supplemental Material S1. </b>Codes and definitions for participants, speech-generating devices (SGDs), dependent variables, and settings/routines. <br><b>Supplemental Material S2. </b>General and specific strategy definitions.<br><b>Supplemental Material S3. </b>Participants, SGD types/use, and routines/settings.<br><b>Supplemental Material S4. </b>Intervention packages, strategies, results, and certainty of evidence.<br>Gevarter, C., & Zamora, C. (2018). Naturalistic speech-generating device interventions for children with complex communication needs: A systematic review of single-subject studies. <i>American Journal of Speech-Language Pathology, 27, </i>1073–1090. https://doi.org/10.1044/2018_AJSLP-17-0128<br>
DOI: 10.23641/asha.6615332.v2
title: Naturalistic speech-generating device (Gevarter & Zamora, 2018)

description: <b>Purpose: </b>This article presents a systematic review that aimed to synthesize single-subject–design studies that have examined naturalistic interventions for teaching the expressive use of speech-generating devices (SGDs) to children with complex communication needs. Specifically, this review describes what intervention strategies are most commonly applied in studies with positive effects and minimal methodological flaws and examines the populations and outcomes for which these strategies have been effective.<b>Method:</b> A systematic approach was used to qualitatively code variables of interest to this review. Results were summarized via both visual analysis and effect size methods, and a certainty of evidence methodology was adopted to describe the quality of the evidence.<b>Results: </b>Thirty-two unique studies met inclusion criteria, with 19 having consistent positive results and meeting minimum requirements for certainty of evidence. Although studies used a variety of titles to describe intervention packages (e.g., milieu teaching, interaction strategies), certain strategies were common across studies. These included (a) creating and capturing communication opportunities via methods such as time delay and questioning; (b) providing feedback via methods such as reinforcement of requests, praise, or expansions; (c) prompting (verbal, physical, gestural); (d) modeling; and (e) training communication partners.<b>Conclusions:</b> Findings regarding these intervention components help to provide practical guidelines for naturalistic SGD intervention. Limitations of the current body of research (e.g., need to include more home-based studies and more intermediate to advanced SGDs, need to critically analyze the most critical intervention components) provide suggestions for future research.<br><b>Supplemental Material S1. </b>Codes and definitions for participants, speech-generating devices (SGDs), dependent variables, and settings/routines. <br><b>Supplemental Material S2. </b>General and specific strategy definitions.<br><b>Supplemental Material S3. </b>Participants, SGD types/use, and routines/settings.<br><b>Supplemental Material S4. </b>Intervention packages, strategies, results, and certainty of evidence.<br>Gevarter, C., & Zamora, C. (2018). Naturalistic speech-generating device interventions for children with complex communication needs: A systematic review of single-subject studies. <i>American Journal of Speech-Language Pathology, 27, </i>1073–1090. https://doi.org/10.1044/2018_AJSLP-17-0128<br>
DOI: 10.23641/asha.6615332.v1
title: Naturalistic speech-generating device (Gevarter & Zamora, 2018)

description: <b>Purpose: </b>This article presents a systematic review that aimed to synthesize single-subject–design studies that have examined naturalistic interventions for teaching the expressive use of speech-generating devices (SGDs) to children with complex communication needs. Specifically, this review describes what intervention strategies are most commonly applied in studies with positive effects and minimal methodological flaws and examines the populations and outcomes for which these strategies have been effective.<b>Method:</b> A systematic approach was used to qualitatively code variables of interest to this review. Results were summarized via both visual analysis and effect size methods, and a certainty of evidence methodology was adopted to describe the quality of the evidence.<b>Results: </b>Thirty-two unique studies met inclusion criteria, with 19 having consistent positive results and meeting minimum requirements for certainty of evidence. Although studies used a variety of titles to describe intervention packages (e.g., milieu teaching, interaction strategies), certain strategies were common across studies. These included (a) creating and capturing communication opportunities via methods such as time delay and questioning; (b) providing feedback via methods such as reinforcement of requests, praise, or expansions; (c) prompting (verbal, physical, gestural); (d) modeling; and (e) training communication partners.<b>Conclusions:</b> Findings regarding these intervention components help to provide practical guidelines for naturalistic SGD intervention. Limitations of the current body of research (e.g., need to include more home-based studies and more intermediate to advanced SGDs, need to critically analyze the most critical intervention components) provide suggestions for future research.<br><b>Supplemental Material S1. </b>Codes and definitions for participants, speech-generating devices (SGDs), dependent variables, and settings/routines. <br><b>Supplemental Material S2. </b>General and specific strategy definitions.<br><b>Supplemental Material S3. </b>Participants, SGD types/use, and routines/settings.<br><b>Supplemental Material S4. </b>Intervention packages, strategies, results, and certainty of evidence.<br>Gevarter, C., & Zamora, C. (2018). Naturalistic speech-generating device interventions for children with complex communication needs: A systematic review of single-subject studies. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2018_AJSLP-17-0128 <br>
DOI: 10.6084/m9.figshare.6615218
title: Quantification of Mmp1 and Vkg.pdf

description: Macros for the quantification of Metalloproteinase 1 and Viking in wing and haltere discs of wildtype, Haltere mimic and Ultrabithorax RNAi Drosophila prepupae<br>
DOI: 10.6084/m9.figshare.6614975
title: gtReport.txt

description: We conducted extreme-phenotype GWAS comparing CHB patients who achieved functional cure before age of 60 years and those who maintained high serum levels of HBsAg even after age of 60 years.
DOI: 10.6084/m9.figshare.6613919
title: Is there a role for melanopsin in chromatic adaptation?

description: Talk given on 20/06/2018 at LS16 in Sheffield, UK.<br>Above are:1. pdf of slides (hyperlinks preserved)2. powerpoint file (notes preserved)3. pdf of slides with notes preserved (but not hyperlinks)<br><br>Abstract: We consider the applied problem of producing museum lighting which is visually pleasing yet causes minimal damage to objects. Within this context we consider whether melanopsin (the photo-pigment expressed by intrinsically photosensitive retinal ganglion cells) may have the right attributes to play a role in chromatic adaptation (the process by which human vision adapts to ambient lighting of different chromaticities). I shall give an overview of the context and motivation, and multiple experiments which are ongoing, and which attempt to answer this question from different perspectives.<br>A longer abstract will be available in the conference proceedings (or email the author).
DOI: 10.6084/m9.figshare.6613919.v1
title: Is there a role for melanopsin in chromatic adaptation?

description: Talk given on 20/06/2018 at LS16 in Sheffield, UK.<br>Above are:1. pdf of slides (hyperlinks preserved)2. powerpoint file (notes preserved)3. pdf of slides with notes preserved (but not hyperlinks)<br><br>Abstract: We consider the applied problem of producing museum lighting which is visually pleasing yet causes minimal damage to objects. Within this context we consider whether melanopsin (the photo-pigment expressed by intrinsically photosensitive retinal ganglion cells) may have the right attributes to play a role in chromatic adaptation (the process by which human vision adapts to ambient lighting of different chromaticities). I shall give an overview of the context and motivation, and multiple experiments which are ongoing, and which attempt to answer this question from different perspectives.<br>A longer abstract will be available in the conference proceedings (or email the author).
DOI: 10.21227/dcad-v458
title: New observation-Part I

description: This dataset is in support of my claim to new theory me-Part 1, submittthod ed to IEEE Transactions on Circuits and Systems I
DOI: 10.21227/61f8-8k66
title: New observation- I

description: This dataset is in support of my claim to new observation on " " submitted to IEEE Transactions on Circuits and Systems I
DOI: 10.21227/5hz3-f540
title: New observation- 2

description: This dataset is in support of my claim to new observation on " " submitted to IEEE Transactions on Circuits and Systems I