cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27159747
title: Supplementary Material for: Global and Regional Burden of Vaccine-Associated Erythema Multiforme and their Related Vaccines, 1967–2023: An In-Depth Analysis of the World Health Organization Pharmacovigilance Database

description: Objective: Vaccine-associated erythema multiforme (EM) remains under-researched, impacting global vaccine safety evaluations. This study examines the global and regional burden of EM and its association with specific vaccines to optimize vaccination strategies. Materials and Methods: We analyzed data from the WHO pharmacovigilance database on vaccine-associated EM from 1967 to 2023 (n=131,255,418 reports). Reporting frequencies, reported odds ratios (ROR), and information components (IC) were calculated for 16 vaccines across 170 countries. Results: We identified 6,355 cases (males, n=3,182 [50.07%]) of vaccine-associated EM from a total of 46,378 reports of all-cause EM. While vaccine-associated EM has been consistently reported, there has been a notable increase in reported incidence particularly in 2010 and 2020. Measles, mumps, and rubella vaccines had the highest association with vaccine-associated EM reports (ROR, 8.75 [95% confidence interval (CI), 8.11–9.44]; IC, 3.10 [IC0.25, 2.97]), followed by hepatitis B (8.54 [7.66–9.51]; 3.06 [2.88]), hepatitis A (8.11 [7.01–9.39]; 2.98 [2.74]), typhoid (6.50 [4.75–8.90]; 2.60 [2.07]), encephalitis (5.86 [4.35–7.91]; 2.47 [1.96]), diphtheria, tetanus toxoids, pertussis, polio, and Hemophilus influenza type b (5.70 [5.42–5.99]; 2.46 [2.38]), pneumococcal (5.56 [5.11–6.06]; 2.45 [2.31]), rotavirus (4.96 [4.21–5.84]; 2.29 [2.01]), varicella-zoster (4.44 [3.99–4.95]; 2.13 [1.95]).Vaccine-associated EM reports were more strongly correlated with younger age groups and males. The overall fatality rate of vaccine-associated EM was 0.04%. Conclusions: The rise in vaccine-associated EM across multiple vaccines, especially in younger populations, highlights the need for closer monitoring and more informed vaccination practices to mitigate adverse reactions.
DOI: 10.7799/1052221
title: NREL Solar Radiation Research Laboratory (SRRL): Baseline Measurement System (BMS); Golden, Colorado (Data)

description: The SRRL was established at the Solar Energy Research Institute (now NREL) in 1981 to provide continuous measurements of the solar resources, outdoor calibrations of pyranometers and pyrheliometers, and to characterize commercially available instrumentation. The SRRL is an outdoor laboratory located on South Table Mountain, a mesa providing excellent solar access throughout the year, overlooking Denver. Beginning with the basic measurements of global horizontal irradiance, direct normal irradiance and diffuse horizontal irradiance at 5-minute intervals, the SRRL Baseline Measurement System now produces more than 130 data elements at 1-min intervals that are available from the Measurement & Instrumentation Data Center Web site. Data sources include global horizontal, direct normal, diffuse horizontal (from shadowband and tracking disk), global on tilted surfaces, reflected solar irradiance, ultraviolet, infrared (upwelling and downwelling), photometric and spectral radiometers, sky imagery, and surface meteorological conditions (temperature, relative humidity, barometric pressure, precipitation, snow cover, wind speed and direction at multiple levels). Data quality control and assessment include daily instrument maintenance (M-F) with automated data quality control based on real-time examinations of redundant instrumentation and internal consistency checks using NREL's SERI-QC methodology. Operators are notified of equipment problems by automatic e-mail messages generated by the data acquisition and processing system. Radiometers are recalibrated at least annually with reference instruments traceable to the World Radiometric Reference (WRR).
DOI: 10.5063/f15d8q9w
title: Tlalpan profile porosity

description: This dataset is submitted in relation to the article entitled "Pore space memory of the Tlalpan pedosedimentary sequence as an indicator of paleopedogenesis", submitted to the Journal of Plant Nutrition and Soil Science, Willey.The data contain microphotographs and excel data with results of pare space analysis.
DOI: 10.5281/zenodo.12531291
title: Data used in the study: Highly dynamic gamma-ray emissions are common in tropical thunderclouds

description: This repository includes the data presented in the study: Highly dynamic gamma-ray emissions are common in tropical thunderclouds.

Detailed description is given in the uploaded pdf document: Data_description.pdf
DOI: 10.5281/zenodo.13789954
title: The Efficacy of Azithromycin in the Treatment of Influenza A infection: A Systematic Review

description: Background:

The WHO recommendation against the use of macrolides reflects the little low-quality evidence about the effect of azithromycin (AZ) on influenza A infection. Considering recent reports about AZ use despite the WHO's unfavorable recommendations, we aimed to test the evidence for the usage of AZ in the treatment of influenza A infection.

Methods:

Various online databases were searched till August 2023 and thorough text and evidence evaluation resulted in selecting 7 studies.

Results:

The selected reports included randomized control trials (two), cohort (three), case/control (one) studies, and one case report. Pooling of the results was unattainable due to the variability among studies in patient criteria, study outcomes, and study designs. Based on the limited reports with insufficient evidence, a recommendation for the use of AZ in the treatment regimen was not possible despite the associated reduction in inflammatory cytokines by AZ administration and the absence of significant adverse effects or mortality in hospital-admitted or ICU patients. While these findings support the current guidelines for the treatment of influenza A infection, the evidence behind these guidelines and treatment characteristics were illustrated.

Conclusion:

AZ shows a potential symptom improvement and pro-inflammatory laboratory indices in influenza A patients. Another positive aspect is the absence of complications associated with AZ administration to critically ill patients and acceptable prognosis. However, it is crucial to have more quality research on this matter that focuses on the indication of the use of AZ, and the timing of initiation, dosage, and duration of treatment while monitoring adverse events.
DOI: 10.15468/dl.8xgxmr
title: Occurrence Download

description: A dataset containing 1924 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.68064503834611",
 "DecimalLongitude is less than 7.68370459153051",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1924 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024453-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25522/manifesto.mpds.2017b
title: Manifesto Project Dataset

description: The Manifesto Project Dataset provides the scientific community with parties’ policy positions derived from a content analysis of parties’ electoral manifestos. It covers over 1.000 parties from 1945 until today in over 50 countries on five continents.
 The content analysis aims to discover party and presidential stances by quantifying their statements and messages to their electorate. A unified classification scheme with an accompanying set of rules was developed to make such statements comparable. Analysing manifestos allows for measurement of party and presidents’ policy positions across countries and elections within a common framework. Manifestos are understood to be parties’ only and presidential candidates’ main authoritative policy statements and, therefore, as indicators of the parties’ policy preferences at a given point in time.
 The Manifesto Project Data Collection was originally created by the Manifesto Research Group (MRG) in the late 1970s and the 1980s. The work was continued under the name Comparative Manifestos Project (CMP) at the WZB Berlin Social Science Center in the 1990s and 2000s. Since 2009 the Manifesto Research on Political Representation (MARPOR) project updates and extends the dataset. It is funded by the German Research Foundation (DFG) and is still located at the WZB Berlin Social Science Center.
description: Content coding
DOI: 10.26030/9thk-dv75
title: microRNA expression profiles in human peripheral blood lymphocytes cultured in modeled microgravity

description: In the present study we analyzed miRNA and mRNA expression profiles in human peripheral blood lymphocytes (PBLs) incubated in microgravity condition, simulated by a ground-based Rotating Wall Vessel (RWV) bioreactor. Our results show that 42 miRNAs were differentially expressed in MMG-incubated PBLs compared with 1g-incubated ones. Among these, miR-9-5p, miR-9-3p, miR-155-5p, miR-150-3p, and miR-378-3p were the most dysregulated. To improve the detection of functional miRNA-mRNA pairs we performed gene expression profiles on the same samples assayed for miRNA profiling and we integrated miRNA and mRNA expression data. The functional classification of miRNA-correlated genes evidenced significant enrichments in the biological processes of immune/inflammatory response, signal transduction, regulation of response to stress, regulation of programmed cell death and regulation of cell proliferation. We identified the correlation between miR-9-3p, miR-155-5p, miR-150-3p and miR-378-3p expression with that of genes involved in immune/inflammatory response (eg. IFNG and IL17F), apoptosis (eg. PDCD4 and PTEN) and cell proliferation (eg. NKX3-1 and GADD45A). Experimental assays of cell viability and apoptosis induction validated the results obtained by bioinformatics analyses demonstrating that in human PBLs the exposure to reduced gravitational force increases the frequency of apoptosis and decreases cell proliferation. microRNA expression profiling were carried out on total RNA extracted from PBLs of twelve healthy donors at the end of 24h-incubation time in MMG and in 1g conditions. Analyses were performed by using the Human miRNA Microarray kit (V2) (Agilent Technologies), that allows the detection of 723 known human (miRBase v.10.1) and 76 human viral miRNAs. By comparing the expression profile of MMG-incubated vs. 1g-incubated PBLs of the same donor, we found 42 differentially expressed miRNAs, 25 up-regulated and 17 down-regulated.
DOI: 10.5255/ukda-sn-852474
title: Study of dynamic communities on networks - Diabetes tweets
DOI: 10.5281/zenodo.7637988
title: labsyspharm/ORION-CRC

description: This is a companion release for the manuscript, "High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers." 

Nature Cancer: 10.1038/s43018-023-00576-1
bioRxiv: 10.1101/2022.09.28.509927
Visit tissue-atlas.org/atlas-datasets/lin-chen-campton-2023 to view image data (no download required!) and learn more about related work!
The dataset index and scripts for processing and analysis are deposited in the latest release. The same files can also be found on GitHub at github.com/labsyspharm/orion-crc or by following the link under "Related identifiers".
Funding
This work was supported by NCI grants U54-CA225088 and U2C-CA233262 (P.K.S. and S.S.), an NCI SBIR small business grant R41-CA224503 (RareCyte and P.K.S.) and commercial investment from RareCyte; image processing software and data science methods were developed with support from the Bill and Melinda Gates Foundation grant INV-027106 (P.K.S.), a Team Science Grant from the Gray Foundation (P.K.S. and S.S.), the David Liposarcoma Research Initiative (P.K.S. and S.S.), Emerson Collective (P.K.S.) and Ludwig Cancer Research (P.K.S. and S.S.). J.-R.L. is supported by an NCI Research Specialist Award (R50-CA274277), and S.C. by training grants T32-GM007748 from the NIGMS and T32-CA009216 from the NCI. S.S. is also supported by the BWH President's Scholars Award.
Access the full Orion CRC dataset
All images at full resolution, derived image data (e.g., segmentation masks), and single-cell tables are stored and can be accessed through Amazon Web Services (AWS) S3.
AWS S3 bucket location
s3://lin-2023-orion-crc/data
To browse and download the data use either a graphical file transfer application that supports S3 such as CyberDuck, or the AWS CLI tools. A graphical tool may be more convenient but the CLI tools will likely offer higher download speeds. For users who wish to perform processing within AWS, note that the bucket is located in the us-east-1 region so any other resources must be instantiated in this same region.
Cyberduck or Graphical File Transfer Instructions
Make sure anonymous login is selected, either through using the following server information: s3://anonymous@lin-2023-orion-crc.s3.amazonaws.com/ or make sure the anonymous login button is selected.
AWS CLI Tip
Review your IAM permissions and add additional in-line policies, as needed. For example, use: aws s3 ls --no-sign-request s3://lin-2023-crc/data/. If you continue to experience issues using the CLI, please follow the instructions for using a GUI above or refer to AWS existing documentation.
Email tissue-atlas(at)hms.harvard.edu with the subject line "Orion-CRC: Data Access" if you experience issues accessing the above S3 buckets. Please include the steps you have already tried to help us troubleshoot.
File organization
A detailed description of the file organization can be found at github.com/labsyspharm/orion-crc/blob/main/datarelease-README.md
DOI: 10.6073/pasta/00be57c4f397606fb4897cd257b640cc
title: Dataset on sub-daily vertical profiles of physicochemical parameters and chlorophyll concentration in El Val reservoir, together with its daily meteorological data, storage state and downstream flow (2018-2022).

description: This dataset contains the physicochemical parameters and chlorophyll concentration of El Val reservoir (province of Zaragoza, Spain), together with its meteorological conditions, the water level, the stored volume and the flow rate of the effluent, the Queiles River, a few meters downstream of the dam. These data are useful to feed deterministic, data driven or hybrid hydrological models with different purposes, like the identification of the impact of meteorological conditions on the physicochemical properties of the reservoir, like the thermal stratification, as well as the assessment of different management strategies in the reservoir.
 The original data were collected by the Confederación Hidrográfica del Ebro (CHE) and were published in real time through the web page of the Ebro Automatic Water Quality Information System (SAICA Ebro by its initials in Spanish) and the Ebro Automatic Hydrographic Information System (SAIH Ebro by its initials in Spanish). Then, the CHE curated the data that are finally available to the citizens under request by variable and date. In order to facilitate their availability and reuse, these data have been gathered, pre-processed and packaged in the form of datasets. Specifically, they are structured in four data tables: vertical profiles of physicochemical data in the reservoir, meteorological data in the same basin, water level and stored water volume in the reservoir and water flow rate of the Queiles River downstream of the reservoir.
DOI: 10.6084/m9.figshare.21456261.v5
title: Application of an interrupted time series analysis (ITS) to evaluate the effect of universal dialysis policy from 2006 to 2016 in a province of northeastern Thailand

description: This dataset is for the interrupted time series
DOI: 10.6084/m9.figshare.26925850
title: Supplementary Material for: Burnout and Work Engagement Concerning Dental Malpractice Among Saudi Dentists: A Cross-Sectional Study

description: Introduction: Dental malpractice is becoming an increasing concern in the healthcare sector. Dentistry is a highly stressful profession, and neglecting stress and burnout can harm patients, dentists, and the quality of their work. This study estimated the prevalence of dental malpractice, evaluated the association between burnout, work engagement, and dental malpractice, and identified other potential risk factors.

Methods: Between May 2023 and May 2024, a cross-sectional study was conducted using a convenience sample of 259 Saudi dentists working in public dental clinics in Jeddah. Dentists completed an online self-administered anonymous questionnaire that included four sections: sociodemographics and occupational characteristics, a previously valid and reliable Maslach Burnout Inventory, Areas of Worklife Survey, and self-reported dental malpractice questions. Data were analyzed using STATA 18, including descriptive statistics, bivariate analysis, and multivariate analysis. 

Results: Among the 259 responding Saudi dentists, 27% reported malpractice concerns, and 20.8% reported that they had a malpractice claim. Multivariate logistic regression analysis revealed that dentists with high levels of depersonalization (OR=2.44, P=0.012) and low levels of community engagement (OR=2.92, P= 0.011) were more likely to have malpractice concerns. Additionally, dentists working in primary health care centers (OR=4.62, P≤0.001), dentists experiencing high emotional exhaustion (OR= 2.58, P=0.033), and those with low value engagement (OR= 2.99, P=0.017) were more likely to be involved in malpractice claims. 

Conclusion: This study provides in-depth information on dentists' characteristics, burnout levels, work engagement levels, and their association with dental malpractice. Saudi dentists experience high emotional exhaustion and low personal accomplishment. In addition, various workplace factors have been associated with dental malpractice.
DOI: 10.6084/m9.figshare.5971387
title: Practical challenges for researchers in data sharing - Springer Nature survey data (anonymised)

description: Survey data underlying Springer Nature whitepaper 'Practical challenges for researchers in data sharing'. <br><br>Data were collected between April and May in 2017 by contacting registrants to nature.com, biomedcentral.com and springer.com.<br><br>The dataset is made up of 7,719 respondents from 126 different countries.<br><br>Related infographic: https://doi.org/10.6084/m9.figshare.5996786
DOI: 10.15468/dl.zbrcf9
title: Occurrence Download

description: A dataset containing 2605 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mytilus coruscus Gould, 1861"
 ]
}

 The dataset includes 2605 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024454-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tavv8z
title: Occurrence Download

description: A dataset containing 4786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.68370459153051",
 "DecimalLongitude is less than 7.68676414471491",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 4786 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024455-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ra5h7x
title: Occurrence Download

description: A dataset containing 2096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.68676414471491",
 "DecimalLongitude is less than 7.6898236978993",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2096 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024456-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zfnhf
title: Occurrence Download

description: A dataset containing 948 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mytilus chilensis Hupé, 1854"
 ]
}

 The dataset includes 948 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024457-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w4a8s
title: Occurrence Download

description: A dataset containing 2891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.6898236978993",
 "DecimalLongitude is less than 7.69288325108369",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2891 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024458-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fwbkg
title: Occurrence Download

description: A dataset containing 212546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Amaranthus tricolor L., Amaranthus cruentus L., Amaranthus retroflexus L., Amaranthus viridis L., Amaranthus spinosus L., Amaranthus hybridus L., Amaranthus caudatus L.)"
 ]
}

 The dataset includes 212546 records from 2030 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024451-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.