cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6214787
title: Additional file 4: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S5. Codon usage bias ratios for synonymous substitutions between codons ending with G/C and those ending with A/T. Table S6. Codon usage bias ratios for nonsynonymous substitutions between codons ending with G/C and those ending with A/T. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6214787.v1
title: Additional file 4: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S5. Codon usage bias ratios for synonymous substitutions between codons ending with G/C and those ending with A/T. Table S6. Codon usage bias ratios for nonsynonymous substitutions between codons ending with G/C and those ending with A/T. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6214799
title: MOESM4 of Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa

description: Additional file 4. Amplicon deep sequencing data of 222 P. falciparum samples.
DOI: 10.6084/m9.figshare.6214799.v1
title: MOESM4 of Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa

description: Additional file 4. Amplicon deep sequencing data of 222 P. falciparum samples.
DOI: 10.6084/m9.figshare.6214808
title: Additional file 5: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S7. Codon substitution for synonymous substitutions between codons ending with G/C and those ending with A/T. Table S8. Codon substitution for nonsynonymous substitutions between codons ending with G/C and those ending with A/T. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.6214808.v1
title: Additional file 5: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S7. Codon substitution for synonymous substitutions between codons ending with G/C and those ending with A/T. Table S8. Codon substitution for nonsynonymous substitutions between codons ending with G/C and those ending with A/T. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.6214817
title: MOESM5 of Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa

description: Additional file 5. Population frequency, sample counts, and GenBank blast result of the 307 haplotypes identified in the 222 P. falciparum samples.
DOI: 10.6084/m9.figshare.6214817.v1
title: MOESM5 of Multiplicity and molecular epidemiology of Plasmodium vivax and Plasmodium falciparum infections in East Africa

description: Additional file 5. Population frequency, sample counts, and GenBank blast result of the 307 haplotypes identified in the 222 P. falciparum samples.
DOI: 10.6084/m9.figshare.6214826
title: Additional file 6: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S9. Statistics from condonw analysis. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.6214826.v1
title: Additional file 6: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S9. Statistics from condonw analysis. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.6214847
title: Additional file 7: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S10. Spermanâ s rank correlation coefficient between codon bias ratio and GC content of codons. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6214847.v1
title: Additional file 7: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S10. Spermanâ s rank correlation coefficient between codon bias ratio and GC content of codons. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6214874
title: Additional file 8: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S11. Amino acid substitution between cold-water and tropical fishes. Table S12. Amino acid property changes between cold-water and tropical fishes. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.6214874.v1
title: Additional file 8: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S11. Amino acid substitution between cold-water and tropical fishes. Table S12. Amino acid property changes between cold-water and tropical fishes. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.6214892
title: Additional file 9: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S13. Molecular Weight change of amino acids resulting from substitutions between equally GC-rich codons. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6214892.v1
title: Additional file 9: of GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes

description: Table S13. Molecular Weight change of amino acids resulting from substitutions between equally GC-rich codons. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6215123
title: Additional file 2: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: E2-regulated expression of UNC5A in various cell types extracted from published studies using NURSA data resource. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6215123.v1
title: Additional file 2: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: E2-regulated expression of UNC5A in various cell types extracted from published studies using NURSA data resource. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6215198
title: Additional file 2: of Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress

description: Table S1. Differentially expressed protein kinases and protein phosphatases genes involved in low temperature responses. (XLS 74 kb)
DOI: 10.6084/m9.figshare.6215198.v1
title: Additional file 2: of Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress

description: Table S1. Differentially expressed protein kinases and protein phosphatases genes involved in low temperature responses. (XLS 74 kb)
DOI: 10.6084/m9.figshare.6215201
title: Additional file 6: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: Summary of results of RNA-seq of sh-Control and sh5-UNC5A clones of MCF7 and T-47D cells. Various comparisons are shown. (XLSX 859Â kb)
DOI: 10.6084/m9.figshare.6215201.v1
title: Additional file 6: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: Summary of results of RNA-seq of sh-Control and sh5-UNC5A clones of MCF7 and T-47D cells. Various comparisons are shown. (XLSX 859Â kb)
DOI: 10.6084/m9.figshare.6215216
title: Additional file 3: of Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress

description: Table S2. Genes involved in ABA signaling pathway and DREBs in response to low temperature. (XLS 27 kb)
DOI: 10.6084/m9.figshare.6215216.v1
title: Additional file 3: of Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress

description: Table S2. Genes involved in ABA signaling pathway and DREBs in response to low temperature. (XLS 27 kb)
DOI: 10.6084/m9.figshare.6215219
title: Additional file 7: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: Pathways analyses using DAVID of differentially expressed genes under different conditions and in different cell types. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.6215219.v1
title: Additional file 7: of Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis

description: Pathways analyses using DAVID of differentially expressed genes under different conditions and in different cell types. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.25466815
title: saliva_data

description: test data
DOI: 10.6084/m9.figshare.25466815.v3
title: saliva_data

description: test data
DOI: 10.6084/m9.figshare.25466815.v2
title: saliva_data

description: test data
DOI: 10.6084/m9.figshare.6222194
title: Do patients, their families, and doctors really think the same: A population-based, multi-centered cohort study using the Inflammatory Bowel Disease Disability Index

description: Results of IBD-DI questionnaires
DOI: 10.6084/m9.figshare.6222194.v1
title: Do patients, their families, and doctors really think the same: A population-based, multi-centered cohort study using the Inflammatory Bowel Disease Disability Index

description: Results of IBD-DI questionnaires
DOI: 10.6084/m9.figshare.6223646
title: Poly-Drug Use of Prescription Medicine among People with Opioid Use Disorder in China: A Systematic Review and Meta-Analysis

description: <i>Background</i>: Opioid use disorder (OUD) causes substantial public health and social problems worldwide. Poly-drug use is common in people with OUD and increases morbidity and mortality. Investigation of the patterns and characteristics of poly-drug use of prescription medicine among opioid users is needed to develop appropriate prevention and intervention strategies. <i>Objectives</i>: To estimate the prevalence of poly-drug use of prescription medicine among people with OUD in China using meta-analysis. <i>Methods</i>: We searched relevant epidemiological studies published before February 2017 in English and Chinese databases. The quality of included studies was assessed using the Agency for Healthcare Research and Quality scale. The pooled prevalences of prescription medicine use among people with OUD were estimated. <i>Results</i>: We included 80 eligible studies in the meta-analysis. The main prescription medicines were benzodiazepines (BZDs) and prescription opioid analgesics. The pooled prevalence of unclassified BZDs and prescription opioids was 40.6% and 23.2%, respectively. Diazepam was the most frequently co-used BZD (32.6%), followed by triazolam (32.1%), and estazolam (9.2%). Tramadol was the most commonly used prescription opioid (27.3%), followed by methadone (16.8%), buprenorphine (12.6%), pethidine (8.9%), morphine (6.5%), dihydroetorphine (3.9%), and codeine-containing cough syrup (3.7%). BZDs were mainly used for self-medication (56.1%), whereas prescription opioids were primarily coused for nonmedical purposes (69.4%). <i>Conclusions</i>: The results demonstrate that prescription medicine use is widespread among opioid users in China. There needs to be more consideration of poly-drug use, and early interventions and management strategies are needed to prevent poly-drug use among opioid users in China.
DOI: 10.6084/m9.figshare.6223646.v1
title: Poly-Drug Use of Prescription Medicine among People with Opioid Use Disorder in China: A Systematic Review and Meta-Analysis

description: <i>Background</i>: Opioid use disorder (OUD) causes substantial public health and social problems worldwide. Poly-drug use is common in people with OUD and increases morbidity and mortality. Investigation of the patterns and characteristics of poly-drug use of prescription medicine among opioid users is needed to develop appropriate prevention and intervention strategies. <i>Objectives</i>: To estimate the prevalence of poly-drug use of prescription medicine among people with OUD in China using meta-analysis. <i>Methods</i>: We searched relevant epidemiological studies published before February 2017 in English and Chinese databases. The quality of included studies was assessed using the Agency for Healthcare Research and Quality scale. The pooled prevalences of prescription medicine use among people with OUD were estimated. <i>Results</i>: We included 80 eligible studies in the meta-analysis. The main prescription medicines were benzodiazepines (BZDs) and prescription opioid analgesics. The pooled prevalence of unclassified BZDs and prescription opioids was 40.6% and 23.2%, respectively. Diazepam was the most frequently co-used BZD (32.6%), followed by triazolam (32.1%), and estazolam (9.2%). Tramadol was the most commonly used prescription opioid (27.3%), followed by methadone (16.8%), buprenorphine (12.6%), pethidine (8.9%), morphine (6.5%), dihydroetorphine (3.9%), and codeine-containing cough syrup (3.7%). BZDs were mainly used for self-medication (56.1%), whereas prescription opioids were primarily coused for nonmedical purposes (69.4%). <i>Conclusions</i>: The results demonstrate that prescription medicine use is widespread among opioid users in China. There needs to be more consideration of poly-drug use, and early interventions and management strategies are needed to prevent poly-drug use among opioid users in China.
DOI: 10.6084/m9.figshare.6223967
title: Additional file 1: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Distribution of contigs according to length. (XLSX 9014Â kb)
DOI: 10.6084/m9.figshare.6223967.v1
title: Additional file 1: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Distribution of contigs according to length. (XLSX 9014Â kb)
DOI: 10.6084/m9.figshare.6223979
title: Additional file 1: of Targeting cattle for malaria elimination: marked reduction of Anopheles arabiensis survival for over six months using a slow-release ivermectin implant formulation

description: Table S1. Survival analysis in all mosquito groups throughout the experiment. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6223988
title: Additional file 2: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Contigs mapped per library. R204, R245, R41 and R78 correspond to the colony replicate and the last digit of the library ID to the life-cycle stage or condition: 1. Arrest, 2. Pre-lay, 3. Laying, 4. NR, 5. Emerg., 6.Young, 7. Male, 8. Phor, 9. Cage, 10. Post-lay. (XLSX 11673Â kb)
DOI: 10.6084/m9.figshare.6223979.v1
title: Additional file 1: of Targeting cattle for malaria elimination: marked reduction of Anopheles arabiensis survival for over six months using a slow-release ivermectin implant formulation

description: Table S1. Survival analysis in all mosquito groups throughout the experiment. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6223988.v1
title: Additional file 2: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Contigs mapped per library. R204, R245, R41 and R78 correspond to the colony replicate and the last digit of the library ID to the life-cycle stage or condition: 1. Arrest, 2. Pre-lay, 3. Laying, 4. NR, 5. Emerg., 6.Young, 7. Male, 8. Phor, 9. Cage, 10. Post-lay. (XLSX 11673Â kb)
DOI: 10.6084/m9.figshare.25469452.v1
title: Crosslinks_miR-eCLIP_Ago2IP_minus.bw

description: Non-chimeric crosslinks of Ago2 in mouse thymocytes, from miR181-eCLIP experiment in Verheyden & Klostermann et al 2024. Merge of all 3 replicates, crosslinks from minus strand.
DOI: 10.6084/m9.figshare.6224012
title: Additional file 3: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Graphical representation of contig annotation. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.6224012.v1
title: Additional file 3: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Graphical representation of contig annotation. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.6224021
title: Additional file 2: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S2. Data of variant calling for the three Bordetella bronchiseptica RB50 strains and one Bordetella pertussis Tohama I strain. (XLSX 122Â kb)
DOI: 10.6084/m9.figshare.6224021.v1
title: Additional file 2: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S2. Data of variant calling for the three Bordetella bronchiseptica RB50 strains and one Bordetella pertussis Tohama I strain. (XLSX 122Â kb)
DOI: 10.6084/m9.figshare.6224027
title: Additional file 4: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Contig description. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6224027.v1
title: Additional file 4: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Contig description. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6224045
title: Additional file 3: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S3. Highly comparable RPKMs resulted from RNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 1126Â kb)
DOI: 10.6084/m9.figshare.6224045.v1
title: Additional file 3: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S3. Highly comparable RPKMs resulted from RNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 1126Â kb)
DOI: 10.6084/m9.figshare.6224066
title: Additional file 4: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S4. Highly comparable RPKMs resulted from MicroRNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 95Â kb)
DOI: 10.6084/m9.figshare.6224066.v1
title: Additional file 4: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S4. Highly comparable RPKMs resulted from MicroRNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 95Â kb)
DOI: 10.6084/m9.figshare.6224081
title: Additional file 5: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S5. Highly comparable RPKMs resulted from other small noncoding RNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 2013Â kb)
DOI: 10.6084/m9.figshare.6224081.v1
title: Additional file 5: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S5. Highly comparable RPKMs resulted from other small noncoding RNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 2013Â kb)
DOI: 10.6084/m9.figshare.6224108
title: Additional file 7: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S7. Highly similar taxonomic hierarchy and relative abundance of classification (sheet 1) and strong correlation of number of hits (sheet 2) resulted form 16S rRNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.6224108.v1
title: Additional file 7: of Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

description: Table S7. Highly similar taxonomic hierarchy and relative abundance of classification (sheet 1) and strong correlation of number of hits (sheet 2) resulted form 16S rRNA-Seq using standard Illumina protocol and the sub-nanomolar protocol. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.6224111
title: Additional file 9: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Enriched GO terms for each pairwise comparison of mite life-cycle stages and conditions. Each worksheet reports results (biological process and molecular function) for a specific pairwise comparison. The columns indicate GO ID, GO term, total number of contigs in the GO category, number of contigs differentially expressed within the category, expected number of contigs and P-value. (XLSX 4646Â kb)
DOI: 10.6084/m9.figshare.6224111.v1
title: Additional file 9: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Enriched GO terms for each pairwise comparison of mite life-cycle stages and conditions. Each worksheet reports results (biological process and molecular function) for a specific pairwise comparison. The columns indicate GO ID, GO term, total number of contigs in the GO category, number of contigs differentially expressed within the category, expected number of contigs and P-value. (XLSX 4646Â kb)
DOI: 10.6084/m9.figshare.6224144
title: Additional file 11: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Co-expressed contigs during the adult mite cycle. The co-expression analysis was performed for contigs identified as differentially expressed in at least one of the life-cycle stages by performing a likelihood ratio test of the full model (~stage) versus the null model (~â 1). Cluster labels, as well as the normalized expression counts for each sample, are provided for all contigs included in the co-expression analysis. In the sample names (library IDs), R204, R245, R41 and R78 correspond to the colony replicate and the last digit of the library ID to the life-cycle stage or condition: 1. Arrest, 2. Pre-lay, 3. Laying, 5. Emerg., 6.Young, 8. Phor, 10. Post-lay. (XLSX 6591Â kb)
DOI: 10.6084/m9.figshare.6224144.v1
title: Additional file 11: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Co-expressed contigs during the adult mite cycle. The co-expression analysis was performed for contigs identified as differentially expressed in at least one of the life-cycle stages by performing a likelihood ratio test of the full model (~stage) versus the null model (~â 1). Cluster labels, as well as the normalized expression counts for each sample, are provided for all contigs included in the co-expression analysis. In the sample names (library IDs), R204, R245, R41 and R78 correspond to the colony replicate and the last digit of the library ID to the life-cycle stage or condition: 1. Arrest, 2. Pre-lay, 3. Laying, 5. Emerg., 6.Young, 8. Phor, 10. Post-lay. (XLSX 6591Â kb)
DOI: 10.6084/m9.figshare.6224186
title: Additional file 14: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Abundance of viruses across the reproductive cycle of foundress and different conditions of adult Varroa. Virus abundance is expressed as the mean number of counts for contigs that matched DWV (Deformed Wing virus), VDV-1 (Varroa destructor virus 1), VDV-2 (Varroa destructor virus 1) or Macula viruses in pools of 10 mites (nâ =â 4 for each group). (XLSX 199Â kb)
DOI: 10.6084/m9.figshare.6224186.v1
title: Additional file 14: of Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

description: Abundance of viruses across the reproductive cycle of foundress and different conditions of adult Varroa. Virus abundance is expressed as the mean number of counts for contigs that matched DWV (Deformed Wing virus), VDV-1 (Varroa destructor virus 1), VDV-2 (Varroa destructor virus 1) or Macula viruses in pools of 10 mites (nâ =â 4 for each group). (XLSX 199Â kb)
DOI: 10.34740/kaggle/dsv/7936011
title: OnlineFree
DOI: 10.34740/kaggle/dsv/7936010
title: AutoXGB