cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26965903.v3
title: <b>3D multimodal dental dataset based on CBCT and oral scan.​</b>

description: We collected CBCT and oral scan data from 300 patients aged 19-28 years and invited three doctors to aid in the creation of a multi-modal dental dataset. After thorough data screening and desensitization, we obtained 289 paired dental medical images. We believe that publicly releasing this dataset will provide researchers with valuable new resources to further advance the safeguarding of oral health globally.
DOI: 10.17632/jz7d45p4x2
title: Biogeographic patterns of olenid trilobites

description: The biogeographic histories of two cosmopolitan groups of Olenida: Hypermecaspididae and <i>Parabolinella</i> (Olenidae) are studied herein. Different biogeographical models were compared, and the results were discussed in a paleogeographic and palaeoceanographic context. Dispersal pathways were proposed for both groups, identifying potential environmental factors that affected their distribution. Calibrated phylogenetic hypotheses for each taxon were used to compare different models of geographical evolution with the R package BioGeoBEARS. Time-stratified analyses were carried out, using different distance matrices, for three intervals (Furongian, Early Ordovician, and Middle Ordovician). Numbers and types of biogeographical events were estimated under the best-fitting models by using Biogeographic Stochastic Mapping (BSM). The folders include in this project contain the data used in the analysis, the code, and the outputs of the program.
The best-fitting model for both groups incorporated jump dispersal, indicating that this was an important speciation strategy. Vicariance was unimportant for these trilobites. The main strategy used for both groups would have been “island hopping”, taking advantage of the microterranes and volcanic island arc chains surrounding Laurentia, Baltica, Avalonia, and Gondwana. Superficial currents generated more homogeneous conditions, allowing dispersal by creeping in <i>Parabolinella</i>. By contrast, in Hypermecaspididae long-distance founder events would have been achieved only by stepping-stone, which is consistent with paleogeographic models that contemplate the development of ocean stratification. The different timings in the evolutionary histories of Parabolinella and Hypermecaspididae would have had an impact on the type and time of the event count inferred for each group. These differences can be explained by the tectonic and climatic changes during the intervals studied. Despite these differences, in both clades, founder and dispersal events were more abundant from the western margin of Gondwana, which constituted an important dispersal center during the Late Cambrian and Early Ordovician.
DOI: 10.17632/pxv3724ry3
title: Data-driven Characterization of Cooling Needs in a Portfolio of Co-located Commercial Buildings

description: This dataset contains a measured and cleaned chronological record of cooling consumed during the summer months (May through September) by a hundred and nineteen co-located commercial buildings. The timeseries data is recorded at the daily interval and contains the daily averages of weather-related parameters that reflect the warm Mediterranean climate in which the buildings are located. Additionally, information regarding the physical characteristics and attributes of each building, including the buildings’ area and use type, is also provided. 


More information is available at: https://doi.org/10.1016/j.isci.2024.110398
DOI: 10.6084/m9.figshare.24496615.v1
title: DIPY_EVAC+_weights (new version)

description: The data is for the EVAC+ model in dipy. Old one will be deleted as soon as this is officially used.
DOI: 10.6084/m9.figshare.990215.v2
title: Young Star Animations 2014

description: Spatialplot: We're looking at the spatial positions of the members of known nearby young moving groups - the circles are the galactic plane at 25 and 100 parsecs (the lines point to the galactic center and galactic north pole). These moving groups range from well-studied ones like Ursa Major, beta Pictoris, and TW Hydra, to less well known ones like Octans and Carina. What makes these groups particularly difficult to study is that they're incredibly spread out- they cover large regions of space, overlap with each other, and some are all over the sky. You can't simply point a telescope at one region and expect to get all, or even most of the members. These groups are extremely sparse- if you compare them to a sample of all stars within 25 parsecs (even one that's not yet volume-complete; the RECONS 25 pc list has ~2100 star systems where we expect ~6000), you'll notice how thinly spread these groups are. The nearest neighbors of members of the group are not other members of the group. UVWs: This movie shows the UVW spatial VELOCITIES (relative to the Sun) of all the nearby stars that someone has considered as a member of a nearby young moving group. This is in velocity space, so objects that are moving in parallel through space -- regardless of where they are -- should appear as a single point, and co-moving groups of stars should appear as clusterings. <br>The box (from Zuckerman & Song 2004) is where all stars less than 150 Myrs old are supposed to exist, and I can see about four clusters in there. If I turn on the colors, you can see which cluster is which. One is the beta Pictoris moving group, one is AB Doradus, one is Tuc-Hor, and the rest are smushed up into the fourth one. Now, I'm not saying those groups aren't real, I'm just saying you can't identify them with kinematics alone, you need more information. Prior to Hipparcos and its high precision astrometry, everything within the box was blurred together and it was called the "Local Association". After Gaia and its vastly improved precision, we may be able to break these groups up further.
DOI: 10.6084/m9.figshare.4240232.v2
title: Data for Bailey, Smith et al. 2017.Soil Biology and Biochemistry, 107, 133-143.

description: Data, organized by figure/table number, used for analyses and for figures in Bailey, V. L., Smith, A. P., Tfaily, M., Fansler, S. J., & Bond-Lamberty, B. (2017). Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains. <i>Soil Biology and Biochemistry</i>, <i>107</i>, 133-143.Please note that data here is often in its original form and that statistical analyses were often performed on transformed data (transformed to meet assumptions of normality). Transformations are noted in methods and/or figure and table captions.
DOI: 10.17632/nf22d786tj
title: DReLAB dataset - Deep REinforcement Learning Adversarial Botnet dataset

description: We present the first dataset that aims to serve as a benchmark to validate the resilience of botnet detectors against adversarial attacks. The dataset includes realistic adversarial samples automatically generated by leveraging two widely used Deep Reinforcement Learning (DRL) techniques. These adversarial samples are proved to evade state of the art detectors based on both Machine- and Deep-Learning algorithms. The initial corpus of malicious samples consists in network flows belonging to different botnet families presented in three public datasets that contain real enterprise network traffic. We use these datasets to devise detectors capable of achieving state-of-the-art performance. We then train two DRL agents, based on Double Deep Q-Network and Deep Sarsa, to generate realistic adversarial samples: the goal is achieving misclassifications by performing small modifications to the initial malicious samples; these alterations involve the features that can be more realistically altered by an expert attacker, and do not compromise the underlying malicious logic of the original samples. Our dataset provides an important contribution to the cybersecurity research community as it is the first that includes thousands of automatically generated adversarial samples that are able to thwart state of the art classifiers with a high evasion rate. The adversarial samples are grouped by malware variant and provided in CSV file format. Researchers can validate their defensive proposals by testing their detectors against the adversarial samples introduced in the proposed dataset. Moreover, the analysis and the study of those samples can pave a way to a deeper comprehension of adversarial attacks; to the development of new and effective defensive techniques; and can also benefit the works in the explainability of machine learning algorithms.
DOI: 10.17632/ntvc6bbffx
title: melanoma and melanocytes sequencing

description: We performed RNA deep sequencing on poly-A RNAs from three normal melanocyte primary cultures and three melanoma cell lines. The three melanoma cell-lines were recently established from lymph node metastases of melanoma patients. In addition, in terms of mutations of the raf pathway, one cell-line was not mutated (M383), one had Braf V600E mutation (M305) and the last one harbored N-ras Q61R mutation (M315). Our primary objective was to identify cancer specific neoantigens whose expression is controlled by an IRES-dependent translation. Initial selection of transcripts of interest was performed based on RNA-seq results presented here.
DOI: 10.6084/m9.figshare.27640317.v1
title: Singer et al. Pluto Crater Data for JGR-Planets Publication Titled "Pluto Geologic Map: Use of Crater Data to Understand Age Relationships"

description: Table S1 is a comma-delimited text file (.csv) that contains a list of all craters between 7-to-25 km, their feature identification number (FID), their longitude and latitude in decimal degrees, and the unit abbreviation for the geologic unit they were assigned to.These data are associated with a Singer et al. manuscript submitted to the Journal of Geophysical Research - Planets. The title is "Pluto Geologic Map: Use of Crater Data to Understand Age Relationships". Publication information, including a DOI, will be updated upon completion of the peer review process.<b>Abstract: </b>Pluto’s surface displays a wide variety of geologic units from smooth plains to extremely rugged mountainous expanses. These terrains range in age from young, actively resurfaced regions (no observable craters even in the highest-resolution New Horizons images) to old, heavily cratered, eroded regions. Here we expand upon the crater data analysis and the independent crater data set used in the production of a 1:7M scale geologic map of Pluto that is to be published by the United States Geologic Survey (USGS). We present both relative ages based on crater spatial density (number of craters in a given size bin per km<sup>2</sup>) and also quantitative ages (e.g., 2 Ga) using the estimated impactor flux onto Pluto. The techniques presented here were developed specifically for the information available from a USGS geologic map, where smaller craters are mapped as points only (no specific diameter information per crater). We developed a new type of visualization, called a distributed R-plot, to understand the relative ages of the geologic units. The uncertainties in the current knowledge of the Kuiper belt populations and impactor flux at Pluto propagate to large uncertainties in the estimated quantitative ages (~a factor of two). However, both relative and quantitative ages from crater analysis were still valuable tools in developing the sequence of geologic events. Pluto has large areas of crater-free young terrains (13 units making up ~27% of mapped higher-resolution surface area), with widely varying morphologies, indicating a variety of resurfacing mechanisms, both exogenic and endogenic, likely active into Pluto’s recent past or present.
DOI: 10.6084/m9.figshare.7678481.v1
title: Severity of leaf diseases in onion seedlings produced in low tunnel.

description: ABSTRACT Production of onion seedlings at the region of Alto Vale do Itajaí, Santa Catarina State (SC), Brazil, occurs predominantly in seedbeds, where the plants are exposed to biotic and abiotic factors that directly influence the leaf health and the yield. Thus, the aim of this study was to evaluate the influence of covering seedbeds with low tunnel system on the yield and intensity of leaf diseases. The experiments were carried out in 2012 and 2013 at “Instituto Federal Catarinense”, Rio do Sul, SC. The treatments were with and without low tunnel system. Experimental design was in randomized blocks with four replicates and ten plants evaluated in each replicate. Data were subjected to analysis of variance by the F test and if significant compared according to Tukey’s test 5%. The fresh weight of the aerial part with the tunnel was superior to the conventional system by 127.38% and 125.40% in 2012 and 2013, respectively. In 2012, there was a difference of 42.88% in the area under the disease progress curve (AUDPC) for leaf blight and in 2013 there was a difference of 87.27% and 85% in the AUDPC and final severity, respectively, for downy mildew. The seedlings grown in seedbeds with low tunnel system had superior yield and leaf health, compared to those obtained in the conventional production system.
DOI: 10.17632/mccwkz3xwg
title: Generative AI, Hybrid and Traditional AI Chatbots - Dataset

description: Dataset employed for an experimental study on users' perceptions of different chatbot types: generative, hybrid and traditional AI
DOI: 10.6084/m9.figshare.10251038.v1
title: Genomes of subaerial Zygnematophyceae provide insights into land plant evolution-- Data S1 & S2

description: Supplementary Data S1 & S2
DOI: 10.6084/m9.figshare.12763028.v1
title: Dataset S8 - areas_adjacency.txt

description: Text file for BioGeoBEARS analysis in R, containing the areas adjacency matrix. A=Arctic, NP=North Pacific, AA=Australasia, ESP=Eastern South Pacific, NAT=North Atlantic, SA=South Atlantic, MP=Mediterranean/Paratethys, LB=Lake Baikal, IO=Indian Ocean, SO=Southern Ocean.
DOI: 10.6084/m9.figshare.21253518.v1
title: Raw VOC data per sample

description: <strong>Volatile compounds detected in the headspace of of untreated, starved or starved then surface sterilised </strong><em><strong>C. glomerata</strong></em><strong> parasitised or unparasitised caterpillars (</strong><em><strong>P. brassicae</strong></em><strong>). </strong>Amounts of individual compounds are given as the of peak height. Abbreviations used: Cg = Untreated parasitised caterpillars; Cg-ST = starved parasitised caterpillars; Cg-ST+EMD = starved then external microbiome disrupted caterpillars. Pb = Untreated unparasitised caterpillars; Pb-ST = starved unparasitised caterpillars; Pb-ST+EMD = starved then external microbiome disrupted unparasitised caterpillars.
DOI: 10.6084/m9.figshare.28873895.v1
title: Patient Data for TB and DMT2.xlsx

description: The purpose of this study is to increase the role of private practitioners, especially doctors in primary care with the characteristics of continuous, comprehensive, first contact, and coordinated services in filling TB treatment gaps ranging from suspected TB to complete and cured treatment.
DOI: 10.6084/m9.figshare.5129050.v1
title: Supplementary Material for: Biochemical Screening for Pulmonary Hypertension in Preterm Infants with Bronchopulmonary Dysplasia

description: <b><i>Background:</i></b> Pulmonary hypertension (PH) in infants with bronchopulmonary dysplasia (BPD) is associated with increased morbidity and mortality. Elevated levels of N-terminal pro-B-type natriuretic peptide (NT-proBNP) and decreased levels of amino acid precursors of nitric oxide (NO) have been associated with PH, but have not been studied in infants with PH secondary to BPD. <b><i>Objective:</i></b> The aim of this study was to identify a biochemical marker for PH in infants with BPD. <b><i>Methods:</i></b> Twenty infants, born at &lt;27 weeks' gestational age (GA) and/or with a birth weight (BW) ≤750 g, who met the criteria for BPD at 36 weeks' corrected GA (CGA) were enrolled in this cross-sectional pilot study. A screening echocardiogram was conducted at 36-38 weeks' CGA and plasma NT-proBNP and amino acid levels were obtained within 1 week of the screening echocardiogram. <b><i>Results:</i></b> Five infants (25%) had echocardiographic evidence of PH. GA and BW were not significantly different between the 2 groups (a PH group and a No PH group). NT-proBNP was significantly elevated in the PH group (median 1,650 vs. 520 pg/ml; p = 0.001) but citrulline levels were significantly lower (median 21 vs. 36 μmol/l; p = 0.005). Arginine levels were not significantly different between the groups (median 78 vs. 79 μmol/l; p = 1). <b><i>Conclusion:</i></b> NT-proBNP and the NO precursor citrulline may be cost-effective biochemical markers for screening for the presence of PH in preterm infants who have BPD. If validated in a larger study, such biochemical markers may, in part, replace PH screening echocardiograms in these patients.
DOI: 10.17632/yxbnmmv4db
title: High Performance Concrete

description: Elaborate data containing 1134 experiments
DOI: 10.6084/m9.figshare.16744126.v1
title: The bear-berry connection_data and scripts

description: Data and R scripts used for the manuscript <b>"The bear-berry connection: ecological and management implications of brown bears' food habits in a highly touristic protected area".</b><br>
DOI: 10.6084/m9.figshare.5011637.v1
title: Underwater recordings of the whistles of bottlenose dolphins in Fremantle Inner Harbour, Western Australia

description: Dolphins use frequency-modulated whistles for a variety of social functions. Whistles vary in their characteristics according to context, such as activity state, group size, group composition, geographic location, and ambient noise levels. Therefore, comparison of whistle characteristics can be used to address numerous research questions regarding dolphin populations and behaviour. However, logistical and economic constraints on dolphin research have resulted in data collection biases, inconsistent analytical approaches, and knowledge gaps. Here, we present an acoustic dataset of bottlenose dolphin (<i>Tursiops aduncus</i>) whistles recorded in the Fremantle Inner Harbour, Western Australia. Digital files of individual whistles and corresponding measurements make this dataset available to researchers to address future questions regarding variations within and between dolphin communities. Data were collected using an autonomous recorder and analysed using a range of acoustic measurements. Acoustic data review identified 336 whistles, which were subsequently measured for six key characteristics using Raven Pro software. These six characteristics were: duration, minimum frequency, maximum frequency, delta frequency, start frequency and end frequency. Of these 336 whistles, 164 “high-quality” whistles were manually measured to provide an additional five acoustic characteristics. These additional characteristics were: inflection points, extrema, breaks and saddles. Each of the 336 whistles is stored as an individual .wav file, with a sequential name (Wh_0001, Wh_0002, Wh_0003, etc). File names correspond with a unique “Whistle Number” in an Excel spreadsheet. The date and time of each 10 min acoustic recording are presented, along with a column called “Whistle Begins” which lists the point within a recording when a whistle occurs. This spreadsheet also contains information regarding the whistle quality (Grades 1-3) and the whistle characteristics measured. Duration is measured in seconds, all frequency characteristics are measured in Hz, harmonics are present (1) or absent (0), and all remaining characteristics are counts. Frequency measurements were rounded to the nearest 100 Hz. Further information is available in the accompanying Data Descriptor published in Scientific Data.
DOI: 10.15468/dl.vfgtz6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.877 -22.4563,40.8172 -22.0642,40.48 -21.825,40.0801 -21.8881,39.8467 -22.172,39.8612 -22.5315,40.2159 -22.8442,40.6757 -22.7649,40.877 -22.4563))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013427-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.13139711.v2
title: Raw data subject-CRP-Calcium

description: Raw data contains rapid test, dental and medical history, salivary C-Reactive Protein level and salivary Calcium level.
DOI: 10.6084/m9.figshare.7413503.v1
title: Survey Responses 1st Round.xlsx

description: See Spackman et al. Developing Key Performance Indicators for Prescription Medication Systems. PLOS One
DOI: 10.6084/m9.figshare.12745229.v1
title: Dataset S4

description: Raw velocity seismograms for direct P and S phases propagated through the isotropic subduction zone model. Seismograms are in SAC format (see SAC manual; http://ds.iris.edu/files/sac-manual/). Arrival times for P determined via waveform cross-correlation are stored in the appropriate SAC header. The TauP predicted S arrival time through IASP91 is also stored for reference. SAC files are written individually for each station and component for a particular event. The filenames follow the format EVT.STN.X where 'EVT' is a unique numeric event ID (see Dataset S2), 'STN' is the station name (see Dataset S1), and 'X' is 'N', 'E', or 'Z' corresponding to the north, east, or vertical seismogram component.
DOI: 10.6084/m9.figshare.25392279.v1
title: Non-acute exposure of neonicotinoids, health risk assessment, and evidence integration: a systematic review

description: Neonicotinoid pesticides are utilized against an extensive range of insects. A growing body of evidence supports that these neuro-active insecticides are classified as toxicants in invertebrates. However, there is limited published data regarding their toxicity in vertebrates and mammals. the current systematic review is focused on the up-to-date knowledge available for several neonicotinoid pesticides and their non-acute toxicity on rodents and human physiology. Oral lethal dose 50 (LD<sub>50</sub>) of seven neonicotinoids (i.e. imidacloprid, acetamiprid, clothianidin, dinotefuran, thiamethoxam, thiacloprid, and nitenpyram) was initially identified. Subsequently, a screening of the literature was conducted to collect information about non-acute exposure to these insecticides. 99 studies were included and assessed for their risk of bias and level of evidence according to the Office of Health and Translation (OHAT) framework. All the 99 included papers indicate evidence of reproductive toxicity, hepatotoxicity, nephrotoxicity, neurotoxicity, immunotoxicity, and oxidative stress induction with a high level of evidence in the health effect of rodents and a moderate level of evidence for human health. The most studied type of these insecticides among 99 papers was imidacloprid (55 papers), followed by acetamiprid (22 papers), clothianidin (21 papers), and thiacloprid (11 papers). While 10 of 99 papers assessed the relationship between clothianidin, thiamethoxam, dinotefuran, and nitenpyram, showing evidence of liver injury, dysfunctions of oxidative stress markers in the reproductive system, and intestinal toxicity. This systematic review provides a comprehensive overview of the potential risks caused by neonicotinoid insecticides to humans and rodents with salient health effects. However, further research is needed to better emphasize and understand the patho-physiological mechanisms of these insecticides, taking into account various factors that can influence their toxicity.