cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9877055.v1
title: Additional file 1: of Satellites in the prokaryote world

description: Table S1. A list of all the species studied, including the NCBI description, genome size, CG%, number of satellites and satellites/Mb. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.9877013
title: Additional file 4: of QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

description: List of all candidate genes mapped in the HapMap/GWAS population for anion concentration under phosphate sufficient (+Pi) and deficient (−Pi) treatments. PHO = leaf Pi concentration, PUE = Pi use efficiency, IP6 = leaf phytate concentration, Cit = leaf citrate concentration, Nit = leaf nitrate concentration, Oxa = leaf oxalate concentration, SUL = leaf sulphate concentration. MAF is the minor allele frequency. -log10(P) indicates the significance level of association. β indicates the phenotypic effect of a SNP in (+Pi) or (−Pi) with positive values indicating a positive effect on the trait value from the Col allele. Chromosome numbers are indicated (Chr.). The SNP positions on each chromosome are given, in kilo basepairs (kb). Both SNP position and description is based on TAIR v.10 ( www.arabidopsis.org ). Genes found to be in linkage disequilibrium (LD), (LD &gt; 0.3) or within 10 kb on both sides of the significant SNP if no LD is found, are listed. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9877013.v1
title: Additional file 4: of QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

description: List of all candidate genes mapped in the HapMap/GWAS population for anion concentration under phosphate sufficient (+Pi) and deficient (−Pi) treatments. PHO = leaf Pi concentration, PUE = Pi use efficiency, IP6 = leaf phytate concentration, Cit = leaf citrate concentration, Nit = leaf nitrate concentration, Oxa = leaf oxalate concentration, SUL = leaf sulphate concentration. MAF is the minor allele frequency. -log10(P) indicates the significance level of association. β indicates the phenotypic effect of a SNP in (+Pi) or (−Pi) with positive values indicating a positive effect on the trait value from the Col allele. Chromosome numbers are indicated (Chr.). The SNP positions on each chromosome are given, in kilo basepairs (kb). Both SNP position and description is based on TAIR v.10 ( www.arabidopsis.org ). Genes found to be in linkage disequilibrium (LD), (LD &gt; 0.3) or within 10 kb on both sides of the significant SNP if no LD is found, are listed. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9876989
title: Additional file 1: of QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

description: Population performances, correlations and QTLs for leaf phytate, citrate, nitrate and oxalate concentrations. Overview of comparable results as provided in TablesÂ 1 to 3, for additional anion concentrations. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9876980
title: MOESM2 of Α de novo 3.8-Mb inversion affecting the EDA and XIST genes in a heterozygous female calf with generalized hypohidrotic ectodermal dysplasia

description: Additional file 2: Table S2. Details on private heterozygous SNPs and small indels carried by the HED animal. QUAL and MQ scores: quality score of the variant and mapping quality score of the read containing the variant as calculated by SAMtools. DP4: number of reads containing the reference allele on the forward strand, the alternative allele on the forward strand, the reference allele on the reverse strand and the alternative allele on the reverse strand.
DOI: 10.6084/m9.figshare.9876989.v1
title: Additional file 1: of QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

description: Population performances, correlations and QTLs for leaf phytate, citrate, nitrate and oxalate concentrations. Overview of comparable results as provided in TablesÂ 1 to 3, for additional anion concentrations. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9876980.v1
title: MOESM2 of Α de novo 3.8-Mb inversion affecting the EDA and XIST genes in a heterozygous female calf with generalized hypohidrotic ectodermal dysplasia

description: Additional file 2: Table S2. Details on private heterozygous SNPs and small indels carried by the HED animal. QUAL and MQ scores: quality score of the variant and mapping quality score of the read containing the variant as calculated by SAMtools. DP4: number of reads containing the reference allele on the forward strand, the alternative allele on the forward strand, the reference allele on the reverse strand and the alternative allele on the reverse strand.
DOI: 10.6084/m9.figshare.9876920
title: MOESM1 of Tertiary lymphoid organs in the inflammatory myopathy associated with PD-1 inhibitors

description: Additional file 1: Figure S1. “Clinical and histological features of disease control cases” in 1 page carrying text and 4 figures. Figure S2. “Control study: Normal sera applied in place of the primary antibodies” carrying a figure.
DOI: 10.6084/m9.figshare.9876920.v1
title: MOESM1 of Tertiary lymphoid organs in the inflammatory myopathy associated with PD-1 inhibitors

description: Additional file 1: Figure S1. “Clinical and histological features of disease control cases” in 1 page carrying text and 4 figures. Figure S2. “Control study: Normal sera applied in place of the primary antibodies” carrying a figure.
DOI: 10.6084/m9.figshare.9876893
title: MOESM4 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 4: Figure S5 and S6. Correlation of the measured and calculated pH variations between the inlet and the outlet of the dialyzer (Î pH = pHoutlet â pHinlet) during experimental Set 1 and 2, respectively. Measured values were obtained from BGA while calculated values were obtained according to the Equation 2. Each line accounts for a combination of different ADVOS settings (blood flow/concentrate flow). As demonstrated for Supplementary Figure 3 and 4, for each of the settings, there is a correlation between measured and calculated values according to the Stewart approach.
DOI: 10.6084/m9.figshare.9876887
title: MOESM3 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 3: Figure S3 and S4. Representation of all the BGA tests performed during the experiments from Set 1 and Set 2, respectively. The black line shows values obtained from blood. The green line shows calculated values considering variations (inlet â outlet) from pCO2 and SID according Equation 2 (see methods 2.7). It is assumed that no variation on total protein content occurs as it cannot be lost in the dialyzer. Therefore, variations in [Atot] are not considered within the equation. These results show, that taking into account variations in pCO2 and SID along the dialyzer, the resulting pH at the outlet can be predicted following the calculations suggested by Stewart [29].
DOI: 10.6084/m9.figshare.9876893.v1
title: MOESM4 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 4: Figure S5 and S6. Correlation of the measured and calculated pH variations between the inlet and the outlet of the dialyzer (Î pH = pHoutlet â pHinlet) during experimental Set 1 and 2, respectively. Measured values were obtained from BGA while calculated values were obtained according to the Equation 2. Each line accounts for a combination of different ADVOS settings (blood flow/concentrate flow). As demonstrated for Supplementary Figure 3 and 4, for each of the settings, there is a correlation between measured and calculated values according to the Stewart approach.
DOI: 10.6084/m9.figshare.9876878
title: MOESM2 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 2: Figure S1 and S2. Correlation between variations of inlet and outlet pCO2 with measured or calculated variations in blood pH during experimental Set 1 and Set 2, respectively. The black line shows values obtained from BGA. The green line shows values calculated according to the Equation 2 (see methods 2.7). According to these data, the removal of CO2 and the corresponding decrease on pCO2 accounts for the elevation of blood pH. The higher the CO2 removal, the higher the pH increase in blood that can be achieved.
DOI: 10.6084/m9.figshare.9876887.v1
title: MOESM3 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 3: Figure S3 and S4. Representation of all the BGA tests performed during the experiments from Set 1 and Set 2, respectively. The black line shows values obtained from blood. The green line shows calculated values considering variations (inlet â outlet) from pCO2 and SID according Equation 2 (see methods 2.7). It is assumed that no variation on total protein content occurs as it cannot be lost in the dialyzer. Therefore, variations in [Atot] are not considered within the equation. These results show, that taking into account variations in pCO2 and SID along the dialyzer, the resulting pH at the outlet can be predicted following the calculations suggested by Stewart [29].
DOI: 10.6084/m9.figshare.9876878.v1
title: MOESM2 of Respiratory and metabolic acidosis correction with the ADVanced Organ Support system

description: Additional file 2: Figure S1 and S2. Correlation between variations of inlet and outlet pCO2 with measured or calculated variations in blood pH during experimental Set 1 and Set 2, respectively. The black line shows values obtained from BGA. The green line shows values calculated according to the Equation 2 (see methods 2.7). According to these data, the removal of CO2 and the corresponding decrease on pCO2 accounts for the elevation of blood pH. The higher the CO2 removal, the higher the pH increase in blood that can be achieved.
DOI: 10.6084/m9.figshare.9876839
title: Additional file 9: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 3 The ASTRAL phylogeny. (TXT 7 kb)
DOI: 10.6084/m9.figshare.9876830
title: Additional file 7: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 1 The Prâ +â Fl phylogeny. (TXT 8 kb)
DOI: 10.6084/m9.figshare.9876839.v1
title: Additional file 9: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 3 The ASTRAL phylogeny. (TXT 7 kb)
DOI: 10.6084/m9.figshare.9876836
title: Additional file 8: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 2. The AA phylogeny. (TXT 8 kb)
DOI: 10.6084/m9.figshare.9876830.v1
title: Additional file 7: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 1 The Prâ +â Fl phylogeny. (TXT 8 kb)
DOI: 10.6084/m9.figshare.9876836.v1
title: Additional file 8: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: phylogeny 2. The AA phylogeny. (TXT 8 kb)
DOI: 10.6084/m9.figshare.9876797
title: Additional file 2: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: Table S2. List of the total taxa included in the phylogenetic analyses. Specimen names refer to tip names and include the specimen accession number and preliminary taxonomy. These specimen names can be used to identify a specimenâ s specific molecular data in the supplemental data. Other pieces of information included: taxonomy (family, subfamily, tribe, genus, and species â per Kitching et al., (12)); storage method of the tissues; whether the data came from an AHE probe set, transcriptome, or genome; and collecting date. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9876788
title: Additional file 1: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: Table S1. List of the loci names in the modified Bombycoidea-specific AHE probe set “BOM1”. The first column lists the name of the locus; the second column explains what the locus was named in the “LEP1” kit or the name of the “legacy” or vision-related loci; the third column lists the length (bp) of each locus. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9876797.v1
title: Additional file 2: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: Table S2. List of the total taxa included in the phylogenetic analyses. Specimen names refer to tip names and include the specimen accession number and preliminary taxonomy. These specimen names can be used to identify a specimenâ s specific molecular data in the supplemental data. Other pieces of information included: taxonomy (family, subfamily, tribe, genus, and species â per Kitching et al., (12)); storage method of the tissues; whether the data came from an AHE probe set, transcriptome, or genome; and collecting date. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9876788.v1
title: Additional file 1: of Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives

description: Table S1. List of the loci names in the modified Bombycoidea-specific AHE probe set “BOM1”. The first column lists the name of the locus; the second column explains what the locus was named in the “LEP1” kit or the name of the “legacy” or vision-related loci; the third column lists the length (bp) of each locus. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9876743
title: Figure 3. Mutants have attenuated virulence in G. mellonella.

description: Survival of larvae injected with PBS, approximately 5x10<sup>4</sup> cfu of wild-type <i>B. anthracis </i>Sterne (WT), or the indicated mutant. Each infection was repeated at least three independent times and total number of larvae for each condition are indicated in parentheses.
DOI: 10.6084/m9.figshare.9876764
title: Figure 4. Attenuated virulence is seen in a competition model of infection.

description: Relative survival of wild-type <i>B. anthracis </i>Sterne (WT) and either <i>ΔhtrA</i> or Δ<i>yceGH</i> after being mixed at a 1:1 ratio and injected into each larva. Assays were repeated three independent times.
DOI: 10.6084/m9.figshare.9876737
title: Figure 2. Validation of in vitro phenotype of reconstructed virulence mutants.

description: Growth of wild-type <i>B. anthracis </i>Sterne (WT) was compared to the growth of Δ<i>purH</i> in minimal R-medium after 24 hrs<i>, </i>Δ<i>mntA</i> in H<sub>2</sub>O<sub>2</sub> after 24 hours, Δ<i>htrA</i> in H<sub>2</sub>O<sub>2</sub> after 8 hours and Δ<i>htrA</i> at 44<sup>o</sup>C in BHI. All assays were repeated at least three independent times
DOI: 10.6084/m9.figshare.9876734
title: Figure 1. B. anthracis Sterne can infect G. mellonella larvae

description: <b></b>Larvae were left uninjected (UI), injected with PBS, or injected with <i>B. anthracis</i> Sterne using approximately the number of colony forming units (cfu) indicated. Each infection was repeated three independent times and total number of larvae for each condition are indicated in parentheses.
DOI: 10.6084/m9.figshare.9876743.v1
title: Figure 3. Mutants have attenuated virulence in G. mellonella.

description: Survival of larvae injected with PBS, approximately 5x10<sup>4</sup> cfu of wild-type <i>B. anthracis </i>Sterne (WT), or the indicated mutant. Each infection was repeated at least three independent times and total number of larvae for each condition are indicated in parentheses.
DOI: 10.6084/m9.figshare.9876764.v1
title: Figure 4. Attenuated virulence is seen in a competition model of infection.

description: Relative survival of wild-type <i>B. anthracis </i>Sterne (WT) and either <i>ΔhtrA</i> or Δ<i>yceGH</i> after being mixed at a 1:1 ratio and injected into each larva. Assays were repeated three independent times.
DOI: 10.6084/m9.figshare.9876734.v1
title: Figure 1. B. anthracis Sterne can infect G. mellonella larvae

description: <b></b>Larvae were left uninjected (UI), injected with PBS, or injected with <i>B. anthracis</i> Sterne using approximately the number of colony forming units (cfu) indicated. Each infection was repeated three independent times and total number of larvae for each condition are indicated in parentheses.
DOI: 10.6084/m9.figshare.9876683
title: Spo0 predicted pathways and curated Firmicutes

description: List of manually curated Firmicutes having the Spo0 predicted pathway<br>Columns from "A" to "Q" show each predicted architecture<br>"0" stands for a not predicted architecture"1" stands for a predicted architectureColumns from "R" to "U" carry:<br>KEGG organism identifierClassSpeciesPhenotype<br>Columns from "V" to "W" show the bibliographic reference; in all cases, we are giving live links to the publications. Column "V" shows annotations found in public curated databases.
DOI: 10.6084/m9.figshare.9876737.v1
title: Figure 2. Validation of in vitro phenotype of reconstructed virulence mutants.

description: Growth of wild-type <i>B. anthracis </i>Sterne (WT) was compared to the growth of Δ<i>purH</i> in minimal R-medium after 24 hrs<i>, </i>Δ<i>mntA</i> in H<sub>2</sub>O<sub>2</sub> after 24 hours, Δ<i>htrA</i> in H<sub>2</sub>O<sub>2</sub> after 8 hours and Δ<i>htrA</i> at 44<sup>o</sup>C in BHI. All assays were repeated at least three independent times
DOI: 10.6084/m9.figshare.9876656
title: P_leopardus_genome.gene.gff

description: The gene annotation file of the leopard coral grouper, <i>Plectropomus leopardus</i> genome.
DOI: 10.6084/m9.figshare.9876659
title: File S1

description: <b>File S1</b> Genome annotation for <i>Metrosideros polymorpha</i> (ver. 2.0) in GFF format
DOI: 10.6084/m9.figshare.9876683.v1
title: Spo0 predicted pathways and curated Firmicutes

description: List of manually curated Firmicutes having the Spo0 predicted pathway<br>Columns from "A" to "Q" show each predicted architecture<br>"0" stands for a not predicted architecture"1" stands for a predicted architectureColumns from "R" to "U" carry:<br>KEGG organism identifierClassSpeciesPhenotype<br>Columns from "V" to "W" show the bibliographic reference; in all cases, we are giving live links to the publications. Column "V" shows annotations found in public curated databases.
DOI: 10.6084/m9.figshare.9876656.v1
title: P_leopardus_genome.gene.gff

description: The gene annotation file of the leopard coral grouper, <i>Plectropomus leopardus</i> genome.
DOI: 10.6084/m9.figshare.9876659.v1
title: File S1

description: <b>File S1</b> Genome annotation for <i>Metrosideros polymorpha</i> (ver. 2.0) in GFF format
DOI: 10.26180/5d82dac21d43f
title: The mechanical effect of the periodontal ligament on bone strain regimes in a validated finite element model of a macaque mandible: Raw data from finite element models

description: All raw strain data from FEMs presented in Mehari Abraha et al., (2019).<br>*Surface principal Strains refers to maximum, mid and minimum principal strains exported from the respective surface using the abaqus probe values function<br>*Surface direct strains refers to axial and shear strains exported from the respective surface using the abaqus probe values function. The local coordinate system of all FEMs was such that the X-axis (E11) is in the supero-inferior direction, the Y-axis (E22) in the anterior–posterior direction, and the Z-axis (E33) oriented mediolaterally. Subsequently, E12, E13 and E23 represent shear in the sagittal, frontal and transverse planes respectively.<br>DATA 1: Surface principal strains from cortical bone of Model 4DATA 2: Surface principal strains from cortical bone of Model 1DATA 3: Surface principal strains from cortical bone of the PDL modelDATA 4: Surface principal strains from cortical bone of the NO PDL modelDATA 5: Surface direct strains from cortical bone of the PDL modelDATA 6: Surface direct strains from cortical bone of the NO PDL modelDATA 7: Surface principal strains from teeth of the PDL modelDATA 8: Surface principal strains from teeth of the NO PDL modelDATA 9: Surface direct strains from teeth of the PDL modelDATA 10: Surface direct strains from teeth of the NO PDL modelDATA 11: Surface principal strains from periodontal ligament of the PDL modelDATA 12: Surface principal strains from periodontal ligament of the NO PDL modelDATA 13: Surface direct strains from periodontal ligament of the PDL modelDATA 14: Surface direct strains from periodontal ligament of the NO PDL modelDATA 15: Principal Strains from locations across the working side corpus in Models 1-4DATA 6: Surface principal strains from trabecular tissue of the PDL modelDATA 7: Surface principal strains from trabecular tissue of the NO PDL model
DOI: 10.6084/m9.figshare.9876461
title: Ecological Restoration - Pipeline Sonoran Desert

description: Dataset describing bacterial and fungal soil communities in the Sonoran Desert
DOI: 10.6084/m9.figshare.9876464
title: Cuyama, California long-term ecological research shrub data

description: Ephedra californica shrub data from a long-term ecological research study site.
DOI: 10.6084/m9.figshare.9876467
title: Facial segment assignments

description: The facial segment mat file contains the level and cluster assignment for each of the facial segments ('info') as well as the level and cluster assignment for each of the 7,160 vertices, which can be used to visualize the facial segments ('label'). <br>
DOI: 10.6084/m9.figshare.9876461.v1
title: Ecological Restoration - Pipeline Sonoran Desert

description: Dataset describing bacterial and fungal soil communities in the Sonoran Desert
DOI: 10.6084/m9.figshare.9876458
title: Cuyama, California long-term ecological research site descriptor data

description: Simple descriptive data for long-term ecological research sites.
DOI: 10.6084/m9.figshare.9876464.v1
title: Cuyama, California long-term ecological research shrub data

description: Ephedra californica shrub data from a long-term ecological research study site.