cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7398359.v1
title: Additional file 12: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

description: Orthogroups unique to Peronospora spp. Details sequence names of all proteins inferred as being orthologous only between P. effusa and P. tabacina. To query P. effusa proteins in GenBank, substitute PeffR13 with DD237, PeffR14 with DD238 and remove the -RA suffix. (XLSX 10 kb)
DOI: 10.7284/119984
title: Radiometer data collected during research cruise OC1406A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398350
title: Additional file 17: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S12. The frequencies of TF and non-TF targets. (XLS 22 kb)
DOI: 10.6084/m9.figshare.7398350.v1
title: Additional file 17: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S12. The frequencies of TF and non-TF targets. (XLS 22 kb)
DOI: 10.7284/119985
title: Radiometer data collected during research cruise OC1406A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398344
title: Additional file 11: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

description: Read alignment summary of isolate specific genes. Details genes which were found to contain inter-isolate indels or SNPs which affected either the start or stop codon position of the protein. To query P.effusa proteins in GenBank, substitute PeffR13 with DD237, PeffR14 with DD238 and remove the -RA suffix. (XLSX 17 kb)
DOI: 10.7284/119986
title: Rain Gauge data collected during research cruise OC1406A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398326
title: Additional file 10: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

description: Significant chi-squared results. All significant Chi squared results detected, when comparing the occurrence of domains encoded by P. effusa, P. tabacina, H. arabidopsidis, P. halstedii, P. ramorum, P. sojae and P. infestans. (XLSX 32 kb)
DOI: 10.7284/119977
title: Singlebeam Echosounder data collected during research cruise OC1406A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398326.v1
title: Additional file 10: of Comparative genomics of downy mildews reveals potential adaptations to biotrophy

description: Significant chi-squared results. All significant Chi squared results detected, when comparing the occurrence of domains encoded by P. effusa, P. tabacina, H. arabidopsidis, P. halstedii, P. ramorum, P. sojae and P. infestans. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.7398317
title: Additional file 15: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S11. The top 20 enriched pathways identified for target genes mapped to Banana Genome A. (XLS 33 kb)
DOI: 10.7284/119979
title: Singlebeam Echosounder data collected during research cruise OC1406A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398317.v1
title: Additional file 15: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S11. The top 20 enriched pathways identified for target genes mapped to Banana Genome A. (XLS 33 kb)
DOI: 10.6084/m9.figshare.7398311
title: Additional file 1: of Genomic insights into virulence mechanisms of Leishmania donovani: evidence from an atypical strain

description: Table S1-(A). Summary of patient characteristics. Table S1-(B). Genome coverage and number of sequencing reads per sample Table S2. Calculation of chromosome somy. Table S3. Chromosome somy calls in Sri Lankan L. donovani six CL and two VL isolates. Table S4. Genes with highly variable copy numbers between Sri Lankan L. donovani CL and VL isolates. Table S5. Multicopy genes (tandem arrays) with highly variable copy numbers between Sri Lankan L. donovani CL and VL isolates. Table S6. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL isolates. Table S7. Multicopy genes (tandem arrays) in Sri Lankan L. donovani VL isolates. Table S8. Gene ontology enrichment in Sri Lankan Leishmania donovani CL and VL isolates based on genes identified with high copy numbers. Table S9. REVIGO analysis of GO ontology terms for genes with high copy numbers in Sri Lankan Cutaneous and Visceral Leishmania donovani populations Table S10. High SNP count genes in Sri Lankan L. donovani CL isolates. Table S11. High indel count genes in Sri Lankan L. donovani CL isolates. Table S12. High SNP count genes in Sri Lankan L. donovani VL isolates. Table S13. High indel count genes in Sri Lankan L. donovani VL isolates. Table S14. Predicted pseudogenes among L. donovani CL-SL and VL-SL isolates. Table S15. Genes under strong selection among the high SNP count genes in Sri Lankan L. donovani CL isolates. Table S16. Genes under strong selection among the high SNP count genes in Sri Lankan L. donovani VL isolates. Table S17. Genes with highly variable copy numbers between Sri Lankan L. donovani CL wild type and CL poor responders to sodium stibogluconate. Table S18. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL wild type. Table S19. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL poor responders to sodium stibogluconate. Table S20. Multicopy genes (tandem arrays) with highly variable copy numbers between Sri Lankan L. donovani CL wild type and CL poor responders to sodium stibogluconate. Table S21. Top genes with non-synonymous unique SNPs in Sri Lankan L. donovani CL poor responders to SSG. Table S22. Predicted pseudogenes and their functions in L. donovani CL wild type and CL poor responders to sodium stibogluconate. (XLSX 961 kb)
DOI: 10.7284/119987
title: Speedlog data collected during research cruise OC1406A using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398305
title: Additional file 14: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S10. KEGG enrichment analysis mapped to Banana Genome A. (XLS 239 kb)
DOI: 10.6084/m9.figshare.7398311.v1
title: Additional file 1: of Genomic insights into virulence mechanisms of Leishmania donovani: evidence from an atypical strain

description: Table S1-(A). Summary of patient characteristics. Table S1-(B). Genome coverage and number of sequencing reads per sample Table S2. Calculation of chromosome somy. Table S3. Chromosome somy calls in Sri Lankan L. donovani six CL and two VL isolates. Table S4. Genes with highly variable copy numbers between Sri Lankan L. donovani CL and VL isolates. Table S5. Multicopy genes (tandem arrays) with highly variable copy numbers between Sri Lankan L. donovani CL and VL isolates. Table S6. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL isolates. Table S7. Multicopy genes (tandem arrays) in Sri Lankan L. donovani VL isolates. Table S8. Gene ontology enrichment in Sri Lankan Leishmania donovani CL and VL isolates based on genes identified with high copy numbers. Table S9. REVIGO analysis of GO ontology terms for genes with high copy numbers in Sri Lankan Cutaneous and Visceral Leishmania donovani populations Table S10. High SNP count genes in Sri Lankan L. donovani CL isolates. Table S11. High indel count genes in Sri Lankan L. donovani CL isolates. Table S12. High SNP count genes in Sri Lankan L. donovani VL isolates. Table S13. High indel count genes in Sri Lankan L. donovani VL isolates. Table S14. Predicted pseudogenes among L. donovani CL-SL and VL-SL isolates. Table S15. Genes under strong selection among the high SNP count genes in Sri Lankan L. donovani CL isolates. Table S16. Genes under strong selection among the high SNP count genes in Sri Lankan L. donovani VL isolates. Table S17. Genes with highly variable copy numbers between Sri Lankan L. donovani CL wild type and CL poor responders to sodium stibogluconate. Table S18. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL wild type. Table S19. Multicopy genes (tandem arrays) in Sri Lankan L. donovani CL poor responders to sodium stibogluconate. Table S20. Multicopy genes (tandem arrays) with highly variable copy numbers between Sri Lankan L. donovani CL wild type and CL poor responders to sodium stibogluconate. Table S21. Top genes with non-synonymous unique SNPs in Sri Lankan L. donovani CL poor responders to SSG. Table S22. Predicted pseudogenes and their functions in L. donovani CL wild type and CL poor responders to sodium stibogluconate. (XLSX 961 kb)
DOI: 10.7284/119975
title: Water Temperature data collected during research cruise OC1406A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398305.v1
title: Additional file 14: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S10. KEGG enrichment analysis mapped to Banana Genome A. (XLS 239 kb)
DOI: 10.7284/119988
title: Water Temperature data collected during research cruise OC1406A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398290
title: Additional file 13: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S9. Significant GO terms for target genes of differentially miRNAs mapped to Banana Genome A. (XLS 5758 kb)
DOI: 10.7284/119989
title: Transmissometer data collected during research cruise OC1406A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398290.v1
title: Additional file 13: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S9. Significant GO terms for target genes of differentially miRNAs mapped to Banana Genome A. (XLS 5758 kb)
DOI: 10.7284/119990
title: TSG (Thermosalinograph) data collected during research cruise OC1406A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398278
title: Additional file 4: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full lists of GO enriched terms (BP: biological processes, and CC: cellular compartment) for the subsets of windows showing particular patterns of epigenetic change (Fig. 5). (ZIP 72 kb)
DOI: 10.6084/m9.figshare.7398278.v1
title: Additional file 4: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full lists of GO enriched terms (BP: biological processes, and CC: cellular compartment) for the subsets of windows showing particular patterns of epigenetic change (Fig. 5). (ZIP 72 kb)
DOI: 10.7284/120008
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1406B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398263
title: Additional file 11: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S8. Numbers of miRNA targets. (XLS 42 kb)
DOI: 10.6084/m9.figshare.7398263.v1
title: Additional file 11: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S8. Numbers of miRNA targets. (XLS 42 kb)
DOI: 10.7284/119995
title: Anemometer data collected during research cruise OC1406B using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119993
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1406B using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398257
title: Additional file 3: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full lists of GO enriched terms (BP: biological processes, and CC: cellular compartment) for the three experiments, including the genes overlapping with the detected windows within each GO term. (ZIP 33 kb)
DOI: 10.6084/m9.figshare.7398254
title: MOESM2 of Rapid computation and visualization of data from Kano surveys in R

description: Additional file 2. Sample dataset used in this paper.
DOI: 10.6084/m9.figshare.7398254.v1
title: MOESM2 of Rapid computation and visualization of data from Kano surveys in R

description: Additional file 2. Sample dataset used in this paper.
DOI: 10.6084/m9.figshare.7398257.v1
title: Additional file 3: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full lists of GO enriched terms (BP: biological processes, and CC: cellular compartment) for the three experiments, including the genes overlapping with the detected windows within each GO term. (ZIP 33 kb)
DOI: 10.7284/119997
title: Fluorometer data collected during research cruise OC1406B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398245
title: Additional file 10: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S7. Annotation of miRNA targets mapped to Banana Genome A. (XLS 499 kb)
DOI: 10.6084/m9.figshare.7398248
title: Additional file 2: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full list of windows in all chromosomes for the three experiments (in plain text and html format). The lists include the detailed epigenetic profiles for the windows as well as links to inspect these in a genome browser. (ZIP 973 kb)
DOI: 10.6084/m9.figshare.7398248.v1
title: Additional file 2: of Automatic detection of genomic regions with informative epigenetic patterns

description: Full list of windows in all chromosomes for the three experiments (in plain text and html format). The lists include the detailed epigenetic profiles for the windows as well as links to inspect these in a genome browser. (ZIP 973 kb)
DOI: 10.6084/m9.figshare.7398245.v1
title: Additional file 10: of High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

description: Table S7. Annotation of miRNA targets mapped to Banana Genome A. (XLS 499 kb)
DOI: 10.7284/117344
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1406B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398239
title: MOESM1 of Rapid computation and visualization of data from Kano surveys in R

description: Additional file 1. R code to perform the analysis explained in the paper.
DOI: 10.6084/m9.figshare.7398239.v1
title: MOESM1 of Rapid computation and visualization of data from Kano surveys in R

description: Additional file 1. R code to perform the analysis explained in the paper.
DOI: 10.7284/119998
title: Gyrocompass data collected during research cruise OC1406B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398224
title: Additional file 2: of Budgeting for a billion: applying health technology assessment (HTA) for universal health coverage in India

description: Summary of results. Tables summarising results of the data collected through the survey. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7398224.v1
title: Additional file 2: of Budgeting for a billion: applying health technology assessment (HTA) for universal health coverage in India

description: Summary of results. Tables summarising results of the data collected through the survey. (XLSX 15 kb)
DOI: 10.7284/120000
title: Hygrometer data collected during research cruise OC1406B using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119999
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1406B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398212
title: MOESM2 of The genomics of desmoplastic small round cell tumor reveals the deregulation of genes related to DNA damage response, epithelial–mesenchymal transition, and immune response

description: Additional file 2. Table S1. List of somatic mutations identified in each patient. Table S2. List, information and literature supply for genes mutated or copy number altered described in the main text as belonging to DDR or MErT/EMT categories. Table S3. List of somatic copy number aberrations identified by EXCAVATOR2. Table S4. List of gains with at least two copies and losses with homozygous deletions. Table S5. List of recurrent amplified genes on chromosome 1. Table S6. List of recurrently amplified genes of chromosome 1, belonging to the two significant biological functions identified by Ingenuity Pathway Analysis (IPA®, Qiagen; Bioinformatics, Redwood City, CA, USA; http://www.qiagen.com/ingenuity ). For the entire name of the genes, reported as gene ID, see Table S5. Table S7. List of recurrent deleted genes on chromosome 6.
DOI: 10.6084/m9.figshare.7398212.v1
title: MOESM2 of The genomics of desmoplastic small round cell tumor reveals the deregulation of genes related to DNA damage response, epithelial–mesenchymal transition, and immune response

description: Additional file 2. Table S1. List of somatic mutations identified in each patient. Table S2. List, information and literature supply for genes mutated or copy number altered described in the main text as belonging to DDR or MErT/EMT categories. Table S3. List of somatic copy number aberrations identified by EXCAVATOR2. Table S4. List of gains with at least two copies and losses with homozygous deletions. Table S5. List of recurrent amplified genes on chromosome 1. Table S6. List of recurrently amplified genes of chromosome 1, belonging to the two significant biological functions identified by Ingenuity Pathway Analysis (IPA®, Qiagen; Bioinformatics, Redwood City, CA, USA; http://www.qiagen.com/ingenuity ). For the entire name of the genes, reported as gene ID, see Table S5. Table S7. List of recurrent deleted genes on chromosome 6.
DOI: 10.7284/120001
title: Radiometer data collected during research cruise OC1406B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120002
title: Radiometer data collected during research cruise OC1406B using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120003
title: Rain Gauge data collected during research cruise OC1406B using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119994
title: Singlebeam Echosounder data collected during research cruise OC1406B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119996
title: Singlebeam Echosounder data collected during research cruise OC1406B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120004
title: Speedlog data collected during research cruise OC1406B using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119992
title: Water Temperature data collected during research cruise OC1406B using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120005
title: Water Temperature data collected during research cruise OC1406B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120006
title: Transmissometer data collected during research cruise OC1406B using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120007
title: TSG (Thermosalinograph) data collected during research cruise OC1406B using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120012
title: Anemometer data collected during research cruise OC1407A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398107
title: Additional file 8: of Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?

description: HyDe output for all comparisons. (XLSX 3454â kb)
DOI: 10.7284/120010
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1407A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398107.v1
title: Additional file 8: of Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?

description: HyDe output for all comparisons. (XLSX 3454â kb)
DOI: 10.6084/m9.figshare.7398095
title: Additional file 7: of Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?

description: 1024 SNP SNPhylo phylogeny. (NEX 277â kb)
DOI: 10.7284/120014
title: Fluorometer data collected during research cruise OC1407A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition