cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j01c1v8v
title: Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: This dataset describes a set of impact and residual compression strength tests and accompanying non-destructive evaluation (NDE) data. The data has three major divisions: impact testing, NDE collection, and residual strength testing. Impact testing data primarily consists of force-history impact curves, residual indentation measurements and some accompanying photos. Non-destructive data collected for this specimen include X-ray computed tomography (CT) and ultrasonic pulse-echo (UT) scanning. CT data is available as a .tif format. TIFF (.tif) format files are the CT database output as image slices provided in a stacked format. UT data is available as .stdd format, and .mat format. .stdd format files are the datastream files from the NASA Langley Floating Ultrasonic Scanning system. MAT (.mat) files are Matlab readable database files that include each A-scan and relevant scanning parameters, these files are also readable with Python. Residual strength testing data consists of the force-displacement curve, digital image correlation (DIC) images collected by 1 stereo camera pair for the front and 2 pairs for the back of the specimen, and accompanying testing images (including post-failure damage state photos). DIC images are provided in .tif format with an .xls file describing the DIC frame count connection with the loading of the specimen. DIC processed output is provided as Vic3D output and project files (.out and .Z3D) and as MAT (.mat) Matlab output.
DOI: 10.6075/j0x065gf
title: Specimen TC-24-31-1. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
description: 19.5 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
DOI: 10.6075/j05h7dpr
title: Specimen TC-24-33-2. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: 29.5 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
DOI: 10.6075/j01r6nz1
title: Specimen TC-24-33-1. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: 24.1 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
DOI: 10.6075/j0s75drq
title: Specimen TC-24-32-2. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
description: 29.3 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
DOI: 10.6075/j0ng4p1d
title: Specimen TC-24-32-1. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: 29.4 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
DOI: 10.6075/j0hq3xb4
title: Specimen TC-24-31-2. In Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

description: 24.1 J impact with a 25.4 mm radius impactor. 101.6 x 152.4 mm specimen dimensions. T800S/3900-2B unidirectional prepreg with a 24 ply [0/45/90/-45]3s layup. Additional fiberglass woven ply and aircraft grade paint on impact side. 76.2 x 101.6 mm picture frame impact window.
description: This specimen dataset includes impact, CT and UT NDE, and residual strength testing results.
DOI: 10.6084/m9.figshare.21555165
title: MAG Taxonomy and Genome Statistics

description: List of the MAGs obtained from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet includes the binID, their taxonomy, NCBI accession, and levels of completeness and contamination, among other genome statistics. This is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21555165.v3
title: MAG Taxonomy and Genome Statistics

description: List of the MAGs obtained from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet includes the binID, their taxonomy, NCBI accession, and levels of completeness and contamination, among other genome statistics. This is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21555165.v2
title: MAG Taxonomy and Genome Statistics

description: List of the MAGs obtained from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet includes the binID, their taxonomy, NCBI accession, and levels of completeness and contamination, among other genome statistics. This is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6075/j0z036kc
title: Spherical Sound Search

description: Extended Reality (XR) encompases Virtual Reality (VR), Mixed Reality (MR) and Augmented Reality (AR). The three pieces in this concert feature musical instruments for each one of these XR modalities. The compositions and instrument designs are debut works by University of California San Diego Computer Music PhD Candidate Isaac Garcia Munoz.
DOI: 10.6075/j0959fz9
title: Push Pull - An AR Rock Single. In Spherical Sound Search

description: Video: H264 (High), yuv420p, 1920x1080 Audio: 48kHz binaural mixed in MaxMSP using 3rd Order Ambisonics
DOI: 10.6075/j0dz06p8
title: Between a Log and a Pluck Place - Mixed Reality Minuet. In Spherical Sound Search

description: Video: H264 (High), yuv420p, 1920x1080 Audio: 48kHz binaural mixed in MaxMSP using 3rd Order Ambisonics
DOI: 10.6075/j0jm2814
title: VR Singing Kite - A VR Concerto. In Spherical Sound Search

description: Video: H264 (High), yuv420p, 1920x1080 Audio: 48kHz binaural mixed in MaxMSP using 3rd Order Ambisonics
DOI: 10.6084/m9.figshare.21440763.v4
title: Detailed Study Methods

description: Full study methodology for generating MAGs from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. The data (raw sequences, contigs, and MAGs) were submitted to Microbiology Resource Announcements and are available to download from the NCBI SRA and GenBank.
DOI: 10.25921/3rsq-ke98
title: EM302 Water Column Sonar Data Collected During EX1907
DOI: 10.25921/664z-c664
title: EK60 Water Column Sonar Data Collected During EX1907
DOI: 10.6084/m9.figshare.16595999
title: ML tree of 456 mapped 7PET genomes

description: Maximum-likelihood phylogeny of the 456 mapped 7PET genomes.<br>For variant calling, Illumina short reads were mapped against the novel reference strain CNRVC190243 genome. We mapped all 242 short read sets from 2018-2019 Yemeni <i>V. cholerae </i>isolates, provided read mapping were mapped at a sufficient depth (see below); we also mapped read sets from 218 contextual <i>V. cholerae</i> isolates linked to 7PET-T13 sublineage. Reads were trimmed with Trimmomatic, mapped to both CNRVC190243 reference chromosomes with BWA-MEM. Mapped genomes with an average read depth below 5x over the two chromosomes (n = 4, all from the novel Yemen read sets) were deemed of insufficient read depth and were excluded, for a final set of 456 mapped <i>V. cholerae</i> 7PET genomes. We used the software suite samtools/bcftools v1.9 to call variants with a minimum coverage of 10x read depth, excluding indels. Resulting consensus sequences were combined and processed with snp-sites (Page et al., 2016) to produce a single nucleotide polymorphism (SNP) alignment featuring 2,092 positions. <br>Alternative hypotheses of tolpologies were formulated based on the distribution of branch supports. The topology of the ML tree ouput by RaxML-NG (file with suffix tag "full.rooted") was compared to topologies featured in files with the tags "full.rooted.H9hsisterH9g" and "full.rooted.H9hsisterH9guniteH9c". Shimodaira-Hasegawa test were conducted, showing that the "full.rooted.H9hsisterH9guniteH9c" had better likelihood, and this topology was retained for further analyses.<br>The tree in files which names include the keyword *full* include the 456 genomes; the tree in files which names include the keyword *subcladeH9* is a subtree of the former and include only 352/456 genomes corresponding to the 7PET-T13<b> </b>sublineage and close relatives.<br>BactDating v1.1 was used to estimate a timed phylogeny (using 100,000 Monte-Carlo Markov chain iterations and otherwise default parameters) of the Yemen 2016-2019 genomes and relatives using the ML mapped genome tree (restricted to the 7PET-T13 genome tips) and day-resolved dates as input; median day of the year of isolation was used for isolates where these data were missing.
DOI: 10.6084/m9.figshare.16595999.v1
title: ML tree of 456 mapped 7PET genomes

description: Maximum-likelihood phylogeny of the 456 mapped 7PET genomes.<br>For variant calling, Illumina short reads were mapped against the novel reference strain CNRVC190243 genome. We mapped all 242 short read sets from 2018-2019 Yemeni <i>V. cholerae </i>isolates, provided read mapping were mapped at a sufficient depth (see below); we also mapped read sets from 218 contextual <i>V. cholerae</i> isolates linked to 7PET-T13 sublineage. Reads were trimmed with Trimmomatic, mapped to both CNRVC190243 reference chromosomes with BWA-MEM. Mapped genomes with an average read depth below 5x over the two chromosomes (n = 4, all from the novel Yemen read sets) were deemed of insufficient read depth and were excluded, for a final set of 456 mapped <i>V. cholerae</i> 7PET genomes. We used the software suite samtools/bcftools v1.9 to call variants with a minimum coverage of 10x read depth, excluding indels. Resulting consensus sequences were combined and processed with snp-sites (Page et al., 2016) to produce a single nucleotide polymorphism (SNP) alignment featuring 2,092 positions. <br>Alternative hypotheses of tolpologies were formulated based on the distribution of branch supports. The topology of the ML tree ouput by RaxML-NG (file with suffix tag "full.rooted") was compared to topologies featured in files with the tags "full.rooted.H9hsisterH9g" and "full.rooted.H9hsisterH9guniteH9c". Shimodaira-Hasegawa test were conducted, showing that the "full.rooted.H9hsisterH9guniteH9c" had better likelihood, and this topology was retained for further analyses.<br>The tree in files which names include the keyword *full* include the 456 genomes; the tree in files which names include the keyword *subcladeH9* is a subtree of the former and include only 352/456 genomes corresponding to the 7PET-T13<b> </b>sublineage and close relatives.<br>BactDating v1.1 was used to estimate a timed phylogeny (using 100,000 Monte-Carlo Markov chain iterations and otherwise default parameters) of the Yemen 2016-2019 genomes and relatives using the ML mapped genome tree (restricted to the 7PET-T13 genome tips) and day-resolved dates as input; median day of the year of isolation was used for isolates where these data were missing.
DOI: 10.25921/a4h7-1841
title: EK60 Water Column Sonar Data Collected During EX1903L1
DOI: 10.25921/5z77-pf52
title: EK60 Water Column Sonar Data Collected During EX1105
DOI: 10.25921/bak0-vw80
title: EM302 Water Column Sonar Data Collected During EX1811
DOI: 10.25921/7429-pg50
title: EM302 Water Column Sonar Data Collected During EX1906
DOI: 10.25921/ksfw-fw41
title: EK60 Water Column Sonar Data Collected During EX1811
DOI: 10.25921/bkzv-3n69
title: EK60 Water Column Sonar Data Collected During EX1902
DOI: 10.25921/883w-av19
title: EM302 Water Column Sonar Data Collected During EX1902
DOI: 10.25921/yyt2-vy76
title: EK60 Water Column Sonar Data Collected During EX1905L1
DOI: 10.25921/b0z7-3h74
title: EM302 Water Column Sonar Data Collected During EX1806
DOI: 10.25921/rh2w-7p08
title: EK60 Water Column Sonar Data Collected During EX1106
DOI: 10.25921/1qvp-x523
title: EM302 Water Column Sonar Data Collected During EX1905L1
DOI: 10.25921/rfnr-fc10
title: EK60 Water Column Sonar Data Collected During EX1906
DOI: 10.25921/da14-g582
title: EM302 Water Column Sonar Data Collected During EX1903L1
DOI: 10.25921/wkx8-4489
title: EM302 Water Column Sonar Data Collected During EX1812
DOI: 10.25921/5gpx-h712
title: EK60 Water Column Sonar Data Collected During EX1812
DOI: 10.6084/m9.figshare.21200503
title: Mesocosm snail response variables

description: These three datasets provide the raw growth, survival, and per capita feeding data for snails involved in the mesocosm experiment for this chapter.
DOI: 10.6084/m9.figshare.21200503.v1
title: Mesocosm snail response variables

description: These three datasets provide the raw growth, survival, and per capita feeding data for snails involved in the mesocosm experiment for this chapter.
DOI: 10.5281/zenodo.8213160
title: falco_pelegrinoides_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.8213159
title: falco_pelegrinoides_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21440763
title: Detailed Study Methods

description: Full study methodology for generating MAGs from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. The data (raw sequences, contigs, and MAGs) were submitted to Microbiology Resource Announcements and are available to download from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440763.v6
title: Detailed Study Methods

description: Full study methodology for generating MAGs from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. The data (raw sequences, contigs, and MAGs) were submitted to Microbiology Resource Announcements and are available to download from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440763.v5
title: Detailed Study Methods

description: Full study methodology for generating MAGs from cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. The data (raw sequences, contigs, and MAGs) were submitted to Microbiology Resource Announcements and are available to download from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.23849010
title: Not just range limits: warming rate and thermal sensitivity shape climate change vulnerability in a species range centre

description: Raw and cleaned data associated with Beaty et al. 2023 publication titled under the same name. In this publication, the intraspecific variability in thermal sensitivity of two populations of a marine snail, <i>Nucella lamellosa,</i> was measured using a mesocosm experiment and reciprocal transplant. Growth, feeding rate, and survival were measured along with environmental parameters (e.g., temperature, pH, salinity) in both the lab and field experiments. The three mesocosm datasets provide the raw growth, survival, and per capita feeding data for snails involved in the mesocosm experiment. The reciprocal transplant dataset includes the growth and survival data for all snails involved in the 2019 reciprocal transplant across the four study sites. The weight regressions csv provides submerged and dry snail weight to estimate regression relationships per source population.
DOI: 10.5281/zenodo.8212822
title: Data for "Benchmarking GOCART-2G in the Goddard Earth Observing System (GEOS)"

description: This tar file contains the data produced for the manuscript "Benchmarking GOCART-2G in the Goddard Earth Observing System (GEOS)". The contents include model data from the simulation presented in the paper, a four-year benchmark simulation using version 10.23.0 of GEOS with GOCART2G, spanning the period of 2016 through 2019. Aerosol mass budget terms including emissions, production, and deposition are included as well as the model data sampled according to the observational data sets for MODIS, AERONET, OMPS-LP, CALIOP, IMPROVE, and EMEP.
DOI: 10.5281/zenodo.8212821
title: Data for "Benchmarking GOCART-2G in the Goddard Earth Observing System (GEOS)"

description: This tar file contains the data produced for the manuscript "Benchmarking GOCART-2G in the Goddard Earth Observing System (GEOS)". The contents include model data from the simulation presented in the paper, a four-year benchmark simulation using version 10.23.0 of GEOS with GOCART2G, spanning the period of 2016 through 2019. Aerosol mass budget terms including emissions, production, and deposition are included as well as the model data sampled according to the observational data sets for MODIS, AERONET, OMPS-LP, CALIOP, IMPROVE, and EMEP.
DOI: 10.5281/zenodo.8208984
title: Venom: Toxin Accessory Domain Search

description: This contains the different fasta files used and generated for the search of accessory domains fused with toxin proteins in a variety of venoms and tick saliva. 2023-06-15-updated-venom-tick-proteins.fasta : fasta file of our custom "venom proteins from transcriptomes” data set, that was generated from the transcriptomes of venom glands of 124 species and from the salivary glands of 21 tick species uniprot-toxin-clustering_rep_seq.fasta: fasta file of all the representative sequences of the UniProt manually curated database of proteins and toxins from various venoms (from the animal toxin annotation project ) obtained after clustering. 2023-06-20-outliers-accessory-hits.fasta: fasta file of the accessory sequences identified on the toxin outliers observed in venoms and saliva. updated-accessory-toxin-clustering_rep_seq.fasta: fasta file of the representative sequences of the toxin outliers accessory sequences obtained after clustering.
DOI: 10.5281/zenodo.8208983
title: Venom: Toxin Accessory Domain Search

description: This contains the different fasta files used and generated for the search of accessory domains fused with toxin proteins in a variety of venoms and tick saliva. 2023-06-15-updated-venom-tick-proteins.fasta : fasta file of our custom "venom proteins from transcriptomes” data set, that was generated from the transcriptomes of venom glands of 124 species and from the salivary glands of 21 tick species uniprot-toxin-clustering_rep_seq.fasta: fasta file of all the representative sequences of the UniProt manually curated database of proteins and toxins from various venoms (from the animal toxin annotation project ) obtained after clustering. 2023-06-20-outliers-accessory-hits.fasta: fasta file of the accessory sequences identified on the toxin outliers observed in venoms and saliva. updated-accessory-toxin-clustering_rep_seq.fasta: fasta file of the representative sequences of the toxin outliers accessory sequences obtained after clustering.
DOI: 10.6075/j0cn71vp
title: Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: This collection includes the 3D archaeological record of Çatalhöyük Building 89 as it was digitally documented in 3D by means of structure from motion techniques. Çatalhöyük is a large and well-preserved Neolithic and Chalcolithic mound, or tell, located in the Konya plain, near the town of Çumra in Southern Anatolia, Turkey. The site is known for its elaborate art and symbolism, which have allowed researchers to better understand the social and symbolic processes underpinning early village formation, agricultural intensification, and religious ritual in Anatolia. The purpose of this collection is to curate online all the 3D models and related metadata representing the three-dimensional stratigraphy of Building 89 as they are disseminated through the open source virtual reality application Dig@IT. This application is a multi-platform virtual reality software developed at Duke University during 2014-2016, which fosters archaeological data analysis, interpretation, and curation in a realistic and highly-interactive immersive virtual environment. Between 2009 and 2015, scholars from the University of California Merced, Duke University, and Lund University excavated and documented Building 89 within the 3D Digging Project initiative. Dig@IT app.
DOI: 10.6075/j0tx3crr
title: Building 89, Model B89_14. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U19830 (room fill)
DOI: 10.6075/j0zp44gg
title: Building 89, Model B89_12. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U19829- room fill
DOI: 10.6075/j0fq9v0g
title: Building 89, Model B89_46+F3472_14. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U30924 (hearth infill) + U30976 (post hole infill) + U30977 (back dirty floor S/E of bench) + U30978 (infill S/W)
DOI: 10.6075/j0jh3jkz
title: Building 89, Model F3472_02. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U19872 (hearth rim)
DOI: 10.6075/j0p8499p
title: Building 89, Model F3472_01. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U19871 (hearth fill - burned clay) +U 30945.X1 (Quern Stone top part)
DOI: 10.6075/j0t1521d
title: Building 89, Model F3472_00. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U19865 (first hearth fill )
DOI: 10.6075/j0xp739n
title: Building 89, Model B89_50+F3472_16. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U30989 (hearth infill) + U30990 (hearth's rim east side)
DOI: 10.6075/j02f7ksj
title: Building 89, Model B89_5. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U18780 (NW part laying under B76 - initially called U19813 on 2011 matrix)
DOI: 10.6075/j0668bjq
title: Building 89, Model B89_49+F3472_15. In Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

description: U30987 (hearth infill) + U30981 (post hole near hearth)