cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28560338.v2
title: Agricultural ditches and stream networks are overlooked hotspots of carbon emissions

description: Boxplots showing variation of CH4 flux among different types of ditches (Agriculture (ndiffusive = 41, nebullusive = 9), Forest (n = 24), Urban (n = 10), Wetland (n = 5)), streams (ndiffusive = 321, nebullusive = 27), rivers (Strahler stream order &gt; 4, ndiffusive = 157, nebullusive = 20), and lakes (ndiffusive = 631, nebullusive = 144). (c) Boxplots showing variation of CO2 flux among different types of ditches (Agriculture (n = 40), Forest (n = 26), Urban (n = 12), Wetland (n = 5)), streams (n = 311), rivers (n = 170), and lakes (n = 7250). Abbreviations: DO (dissolved oxygen), OC (organic carbon), SOC (soil organic carbon), TP (total phosphorus), TOC (total organic carbon), TN (total nitrogen), n (number of samples). Carbon emission flux data of ditches was obtained from Silverthorn, Audet [16], streams and rivers from [17], lakes from [18]. Stream and river represent rivers with Strahler stream orders 1-2 and &gt; 5 in the Global River Methane Database of concentrations and fluxes (non-targeted sites were used), respectively.
DOI: 10.6084/m9.figshare.8014997.v1
title: Patient 1 Structure Sets

description: Admire, Pinnacle, and Velocity denote structure sets after a deformable or rigid registration was applied to the MRI holding the CT as primary.
DOI: 10.17632/sgff3j9sbg
title: Isolation of a structural mechanism for uncoupling TCR signaling from peptide-MHC binding. Sibener et al.

description: Additional data related to: Isolation of a structural mechanism for uncoupling TCR signaling from peptide-MHC binding. Sibener et al. Cell (2018).
DOI: 10.6084/m9.figshare.12765404.v1
title: appendix: weight changes and lipids

description: appendix to systematic review
DOI: 10.6084/m9.figshare.1375504.v1
title: cardiac data 1

description: The cardiac data was acquired with a dual source CT scanner(Siemens Somatom Definition, Germany). Each patient was scanned at twenty-one time phases.
DOI: 10.6084/m9.figshare.1612460.v4
title: A new method for identifying the Pacific-South American pattern and its influence on regional climate variability: supplementary metadata

description: This page contains supplementary material relating to the following paper: Irving D, Simmonds I (2016). A new method for identifying the Pacific-South American pattern and its influence on regional climate variability. <i>Journal of Climate</i>. 29, 6109-6125. doi:10.1175/JCLI-D-15-0843.1 In particular, it contains metadata files (.met) for each of the figures in that paper, outlining the history of command line entries that were executed from initial data download right up to the generation of the figure. A snapshot of the code repository referred to in those .met files is also included (github-climate-analysis.zip), however readers are encouraged to view that code at the GitHub repository linked to below instead. It should be noted that it is my daily repository, meaning there is code in there that does not directly relate to the paper - the .met files explain which code is relevant. A link is also included to a live online draft of the paper. The motivation for this approach to publishing reproducible computational research is outlined at: Irving D (2016). A minimum standard for publishing computational results in the weather and climate sciences. <i>Bulletin of the American Meteorological Society</i>. 97, 1149-1158. doi:10.1175/BAMS-D-15-00010.1.
DOI: 10.6084/m9.figshare.5042974.v9
title: Foundations of Dynamical Modeling

description: An introduction to the susceptible-infected-recovered compartmental model of infectious disease transmission. This video lecture includes a demonstration of how to build an SIR model using spreadsheet software (Google Sheets), including a capture of Jonathan's screen as he builds the model.<br>Slide set with video, MMED 2017:- 'Dushoff-TheSIRModelFamily.pdf'- 'Dushoff-Foundations of Dynamic Modelling.mp4'<br>Latest slide set, MMED 2019:'Dushoff_FoundationsOfDynamicModelling_2019.pdf'<br>
DOI: 10.6084/m9.figshare.7290125.v1
title: Lionfish metapopulation paper - Dispersal distances

description: Inter-patch distances between resightings of tagged lionfish
DOI: 10.17632/yyndyf8wxb
title: Manual, SAE L2 and SAE L3 driving on a test track: EEG, ERP, and self-report data

description: This dataset contains empirical data collected in a study conducted in a prototype automated vehicle on a test track. Drivers experienced manual driving, SAE L2 and SAE L3 driving. Continuously, they were presented with a passive auditory oddball task employing two types of beep tones and novel environmental sounds. Their electroencephalography (EEG) was recorded using a 32-channel cap with active electrodes and digitalised with a 1000 Hz sampling frequency. Moreover, we administered the NASA-TLX and the Karolinska Sleepiness Scale after each experimental condition. Thirty participants joined the experiment.
DOI: 10.6084/m9.figshare.12302522.v1
title: Table 3.XLSX

description: Matrix of isoform expression values for a population of Populus deltoides.<br>
DOI: 10.6084/m9.figshare.3851466.v1
title: Bird Audio Detection Challenge 2016: public data

description: Data labels for the Bird Audio Challenge 2016. These annotations indicate the presence/absence of bird sounds in various datasets of 10-second audio clips.<br><br>More info:<br>http://machine-listening.eecs.qmul.ac.uk/bird-audio-detection-challenge/<br><br>===============<br><br>REUSE:<br><br>The data is published under a Creative Commons CC-BY licence, and so you may reuse it as long as you attribute the origin. In academic work, please do this via a citation to our paper on the challenge:<br><br>Dan Stowell, Mike Wood, Yannis Stylianou, Hervé Glotin. Bird detection in audio: a survey and a challenge, in <i>Proceedings of MLSP 2016</i>, arXiv:1608.03417 [cs.SD], 2016.<br><br>You may also wish to link directly to this dataset, which you can do via its DOI https://dx.doi.org/10.6084/m9.figshare.3851466<br><br>===============<br><br>How the annotations were collected:<br><br>The label "hasbird" represents whether a sound clip contains any audible bird sound. Note that there may be other sounds such as weather or humans, occasionally loud - the label does not mean that bird sound predominates.<br><br>The labels were double-annotated, by the following procedures:<br><br>* For the ff1010bird data, the presence/absence of birds was first deduced from the tags provided by the original FreeSound recordist (diverse crowdsourced tags such as "birdsong" "dawn-chorus" or "phylloscopus-collybita"), and then double-checked and refined by a manual annotator.<br><br>* For the warblrb10k data, the annotations were crowdsourced via a web service, answering the following question: "Can you hear any birds in this clip?" Annotations were then double-checked by a manual annotator to correct false-positives and -negatives.<br><br><br>To download the corresponding audio data please see http://machine-listening.eecs.qmul.ac.uk/bird-audio-detection-challenge/<br>
DOI: 10.6084/m9.figshare.868961.v3
title: Locations of 108 Archaic Greek settlements used in Rihll and Wilson 1987.

description: Locations of Archaeic Greek settlements used in RW87 T. E. Rihll and A. G. Wilson, “Spatial Interaction and Structural Models in Historical Analysis: Some Possibilities and an Example” in Histoire & Mesure, 1987 volume 2 - n°1. pp. 5-32. These are derived from a digitisation of Figure 1 of RW87. If you find these useful, please cite this figshare archive or <br>T.S.Evans, R.J.Rivers, "New approaches to Archaic Greek settlement structure", to appear in Les Nouvelles de l’Archéologie, 2014.
DOI: 10.17632/dzzspfszsh
title: PairDiag: An exact diagonalization program for solving general pairing Hamiltonians

description: We present a program for solving exactly the general pairing Hamiltonian based on diagonalization. The program generates the seniority-zero shell-model-like basis vectors via the ‘01’ inversion algorithm. The Hamiltonian matrix is constructed in this seniority-zero space. The program evaluates all non-zero elements of the Hamiltonian matrix “on the fly” using the scattering operator and a search algorithm. The matrix is diagonalized by using the iterative Lanczos algorithm. The OpenMP parallel program thus developed, PairDiag, can efficiently calculate the ground-state eigenvalue and eigenvector of the general pairing Hamiltonian for both the even-mass and the odd-mass system. The program is packaged in a Fortran module, which makes it easy to use the program to replace the BCS approximation in standard self-consistent mean field calculations. For systems with dimension around 10^8, the calculation can be done within hours on standard desktop computers.
DOI: 10.6084/m9.figshare.7916144.v2
title: End-to-end deep image reconstruction from human brain activity

description: Shen, Dwivedi, Majima, Horikawa, and Kamitani (2019) End-to-end deep image reconstruction from human brain activity. Front. Comput. Neurosci. (bioRxiv preprint). <br><br>Here we provide pre-trained deep artificial neural networks (DNN) for reconstructing images from human brain activity. The pre-trained DNNs are composed of generator networks and discriminator networks. The generator networks were trained to reconstruct the stimulus images from human brain fMRI activity. The discriminator networks were trained to distinguish between the reconstructed images and the original stimulus images. The pre-trained DNNs of 3 human subjects are shared here:<br><br>- trainedmodel_sub-01.zip<br>- trainedmodel_sub-02.zip<br>- trainedmodel_sub-03.zip<br><br>These pre-trained DNNs were trained for 500,000 mini-batch iterations, with batch size of 64. In each of the zip files, there are 4 files:<br><br>- generator.caffemodel: the Caffe caffemodel file for the trained generator<br>- generator_test.prototxt: the Caffe prototxt file for the generator<br>- discriminator.caffemodel: the Caffe caffemodel file for the trained discriminator<br>- discriminator.prototxt: the Caffe prototxt file for the discriminator<br><br>Demo code: GitHub<br>
DOI: 10.17632/6p2rtvt23b
title: JUN Engineering Group - Modelling of Delta Extended Multiwinding Transformer

description: Modelling of a Delta Extended Multiwinding Transformer taking in account its magnetic and electrical properties at low frequencies. The main Objective is to study its Inrush, short circuit properties and Harmonyc Losses.
DOI: 10.6084/m9.figshare.25912267.v2
title: Low-temperature Alloy Mechanical Properties Database

description: Low-temperature alloys are important for a wide spectrum of modern technologies ranging from liquid hydrogen, superconductivity to the quantum technology. These applications push the limit of material performance into extreme coldness, often demanding a combination of strength and toughness to address various challenges.Steel is one of the most widely used materials in cryogenic applications. With the deployment in aerospace liquid hydrogen storage and transportation, aluminum and titanium alloys are also gaining increasing attention. Emerging medium-entropy alloys (MEAs) and high-entropy alloys (HEAs) demonstrate excellent low-temperature mechanical performance with a much-expanded space of material design. A database of low-temperature metallic alloys is reported here by collecting the literature data published from 1991 to 2023, which is hosted in an open repository. The workflow of data collection includes automated extraction based on machine learning and natural language processing, supplemented by manual inspection and correction, to enhance data extraction efficiency and database quality. The product datasets cover key performance parameters including yield strength, tensile strength, elongation at fracture, Charpy impact energy, as well as detailed information on materials such as their types, chemical compositions, processing and testing conditions. Data statistics are analyzed to elucidate the research and development patterns and clarify the challenges in both scientific exploration and engineering deployment.
DOI: 10.17632/k3kg9jsrgt
title: Data and Codes for ‘Learning to be rational in the presence of news: a lab investigation’

description: This is the replication package for ‘Learning to be rational in the presence of news: a lab investigation’, by Joep Lustenhouwer and Isabelle Salle
DOI: 10.6084/m9.figshare.13179965.v1
title: Hospitals.shp

description: Hospitals in western USA
DOI: 10.6084/m9.figshare.26268622.v1
title: carbon_data.xlsx

description: 碳排放预测数据<br>
DOI: 10.6084/m9.figshare.3530258.v1
title: Appendix C. Complex models make slightly more conservative predictions of climate change effects.

description: Complex models make slightly more conservative predictions of climate change effects.
DOI: 10.17632/256652nd4d
title: Social media handles, Content, OTT platforms ,Posts and engagement rate 

description: We collected data from a social media monitoring tool called social insider. The data was collected from 17th August 2022 to 17th January 2023. We collected the data from Indian social media handles (Facebook and Instagram) of three Prominent OTT Platforms (Netflix, Amazon Prime Video and Disney +). We filtered the data into 4 categories : Social media handles, OTT platforms, content, post and engagement rate. We looked at each post and found if it was from Facebook or Instagram. Similarly, we coded the data for the type of OTT platform. We classified the data into original/acquired content, TV series /Movie (only original content tv series with one completed run of a season were considered) from the label provided by the OTT provider. Similarly, we categorised the posts into Top-rated or low-rated using Nielsen charts. Furthermore, we coded the posts if they are memes or not basing them on various definitions from scholarly articles. We excluded content which did not have a minimum of three posts from the corpus. Finally, we obtained 165 posts.
DOI: 10.17632/tjdz43w9mm
title: PLS regression variable selection for quantification of biopolymer

description: Spectral data for biopolymer solution in water and cell-free supernatant are used to build PLS models. Four variable selection algorithm, i.e., GA, CARS, ABUSE, and PSO are adopted to build PLS sub-models on reduced variable space. The LOD estimation is performed on the data sets.
DOI: 10.6084/m9.figshare.26978218.v2
title: Data from: Phenology is an important driver of hawkmoth-flower interactions in a megadiverse mountain area in Brazil

description: Hawkmoths and flowers exhibit striking examples of morphological specialisation, yet how these interactions are structured by different processes within communities still need to be better understood. In this study, we investigated the interactions between hawkmoths and flowers in the megadiverse, open-vegetation landscape of the Brazilian Campos Rupestres. Using a zoocentric approach based on pollen loads found on hawkmoth bodies, we assessed their interactions at the community-level. Our results revealed a modular network, with both hawkmoths and flowering plants organised into modules characterised by dissimilarity in their phenologies. This temporal segregation suggests species partitioning resources across the year. Furthermore, phenology better predicted interaction frequencies than abundances in the network. This study represents the first attempt to unravel the organisation of hawkmoth-flower interactions at a community level in this ancient, megadiverse Brazilian ecosystem, and we show that phenology is an important process determining interactions between flowers and specialized pollinators.
DOI: 10.6084/m9.figshare.3527906.v1
title: Appendix C. A description of the methodologies used to assess environmental parameters of the ponds.

description: A description of the methodologies used to assess environmental parameters of the ponds.
DOI: 10.17632/t6nf9k8pj4
title: Human TMC1 and TMC2 are Mechanically gated ion channels

description: Raw and analyzed data
DOI: 10.6084/m9.figshare.11369511.v1
title: An across-breed validation study of 46 genetic markers in canine hip dysplasia

description: The analysis of this dataset is described in the manuscript entitled "An across-breed validation study of 46 genetic markers in canine hip dysplasia" by Mikkola et al., BMC Genomics 2021. https://doi.org/10.1186/s12864-021-07375-x
DOI: 10.6084/m9.figshare.19294349.v2
title: Transfer Learning in Large-Scale Gaussian Graphical Models with False Discovery Rate Control

description: Transfer learning for high-dimensional Gaussian graphical models (GGMs) is studied. The target GGM is estimated by incorporating the data from similar and related auxiliary studies, where the similarity between the target graph and each auxiliary graph is characterized by the sparsity of a divergence matrix. An estimation algorithm, Trans-CLIME, is proposed and shown to attain a faster convergence rate than the minimax rate in the single-task setting. Furthermore, we introduce a universal debiasing method that can be coupled with a range of initial graph estimators and can be analytically computed in one step. A debiased Trans-CLIME estimator is then constructed and is shown to be element-wise asymptotically normal. This fact is used to construct a multiple testing procedure for edge detection with false discovery rate control. The proposed estimation and multiple testing procedures demonstrate superior numerical performance in simulations and are applied to infer the gene networks in a target brain tissue by leveraging the gene expressions from multiple other brain tissues. A significant decrease in prediction errors and a significant increase in power for link detection are observed. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.25441147.v3
title: data.xlsx

description: This dataset contains nanoindentation test results for determining Young's modulus, hardness, fracture toughness of coral reef limestones. This dataset is described and used in the article 'Study on the micromechanical properties of porous coral reef limestone'.
DOI: 10.6084/m9.figshare.29019608
title: Enhanced hydrogen peroxide photosynthesis via charge-complementary π-electron sites

description: Source data for "Enhanced hydrogen peroxide photosynthesis via charge-complementary π-electron sites".
DOI: 10.6084/m9.figshare.8092148.v1
title: Crystallization Behavior and Mechanical Properties of Cu-based Bulk Metallic Glass Composites

description: This work highlights the relationship between the preparation, crystallization behavior, microstructures, and mechanical properties of Cu-based bulk metallic glasses (BMGs) and their composites (BMGCs). (Cu47Zr45Al8)97.5Y1.5Nb in-situ BMGCs were prepared using isothermal annealing, and the experimental results indicate tunable mechanical properties of the alloys by processing parameter manipulation. The crystallinity of (Cu47Zr45Al8)97.5Y1.5Nb BMGCs increases with extended annealing temperature and time, while their phase transition with rising temperature follows Am (amorphous state) → Am + Cu10Zr7 →Am + Cu10Zr7 + AlCu2Zr + Al2Zr. Precipitation strengthening during annealing above 720 K (447 ºC) can enhance the alloy microhardness remarkably and achieve an optimum of 712 HV by annealing at 800 K (527 ºC) for 60 min. TEM results show that Cu10Zr7 with sizes of 12~15 nm precipitates out upon crystallization and thereby accounts for the superior compressive property. The alloy exhibits a fracture strength up to 2080 MPa after annealing at 680 K (407 ºC) for 30 min. Morphological observation of the fracture surface reveals a transition of fracture characteristics from the typical amorphous ductile manner to a brittle manner with further annealing. The investigation provides novel thoughts of BMGs processing for further performance improvement.
DOI: 10.17632/85x3f8r789
title: A novel PLOD1 gene mutation

description: yphoscoliotic Ehlers-Danlos syndrome (kEDS) is a rare autosomal recessive connective tissue disorder characterized by progressive kyphoscoliosis, congenital muscular hypotonia, marked joint hypermobility, and severe skin hyperextensibility and fragility. Deficiency of lysyl hydroxylase 1 (LH1) due to mutations of PLOD1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) gene has been identified as the pathogenic cause of kEDS (kEDS-PLOD1). Up to now, kEDS-PLOD1 has not been reported among Chinese population. We reported a 17-year-old Chinese male patient presenting with hypotonia, joint hypermobility and scoliosis was referred to our hospital. After birth, he was found to have severe hypotonia leading to delayed motor development. Subsequently, joint hypermobility, kyphoscoliosis and amblyopia were found. Inguinal hernia was found at age 5 years and closed by surgery. At the same time, he presented with hyperextensible and bruisable velvety skin with widened atrophic scarring after minor trauma. Dislocation of elbow joint was noted at age of 6 years. Orthopedic surgery for correction of kyphoscoliosis was performed at age 10 years. His family history was unremarkable. Physical examination revealed elevated blood pressure. Slight facial dysmorphologies including high palate, epicanthal folds, and down-slanting palpebral fissures were found. He also had blue sclerae with normal hearing. X-rays revealed severe degree of scoliosis and osteopenia. The Echocardiography findings were normal. Laboratory examination revealed a slightly elevated bone turnover. Based on the clinical manifestations presented by our patient, kEDS was suspected. Genetic analysis revealed a novel homozygous missense mutation of PLOD1 (c.1697 G&gt;A, p.C566Y) (NM_000302.4), confirming the diagnosis of kEDS-PLOD1. Corresponding heterozygous mutation was detected in his parents. This variant is possibly causative for kEDS because it was predicted to be “PROBABLY DAMAGING” with a score 0.999 by Polyphen‐2, “AFFECT PROTEIN FUNCTION” with a score 0.00 by SIFT, and “disease causing” by Mutation Taster.
DOI: 10.6084/m9.figshare.24866355.v1
title: Datasets

description: The dataset involved in <i>Balance confidentiality and publicity of vector data: a novel geometric accuracy reduction method</i>
DOI: 10.17608/k6.auckland.23538261.v1
title: Meerkat Behaviour Recognition Dataset

description: This project contains annotated and unannotated behavioural video footage of meerkats at Wellington Zoo. Data is annotated as bounding boxes with a behaviour class for each frame. <br> Abstract: Recording animal behaviour is an important step in evaluating the well-being of animals and further understanding the natural world. Current methods for documenting animal behaviour within a zoo setting, such as scan sampling, require excessive human effort, are unfit for around-the-clock monitoring, and may produce human-biased results. Several animal datasets already exist that focus predominantly on wildlife interactions, with some extending to action or behaviour recognition. However, there is limited data in a zoo setting or data focusing on the group behaviours of social animals. We introduce a large meerkat (<em>Suricata Suricatta</em>) behaviour recognition video dataset with diverse annotated behaviours, including group social interactions, tracking of individuals within the camera view, skewed class distribution, and varying illumination conditions. This dataset includes videos from two positions within the meerkat enclosure at the Wellington Zoo (Wellington, New Zealand), with 848,400 annotated frames across 20 videos and 15 unannotated videos. <br> Associated annotations: https://meerkat-dataset.github.io/Annotations.zip More information: https://meerkat-dataset.github.io/