cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3522734.v1
title: Appendix A. Details of the hydroacoustic methodology.

description: Details of the hydroacoustic methodology.
DOI: 10.6084/m9.figshare.3522731
title: Appendix B. Zooplankton vertical distributions for Lakes Kulik and Nerka (southwestern Alaska).

description: Zooplankton vertical distributions for Lakes Kulik and Nerka (southwestern Alaska).
DOI: 10.6084/m9.figshare.3522731.v1
title: Appendix B. Zooplankton vertical distributions for Lakes Kulik and Nerka (southwestern Alaska).

description: Zooplankton vertical distributions for Lakes Kulik and Nerka (southwestern Alaska).
DOI: 10.6084/m9.figshare.3522728
title: Appendix C. Temperature–depth profiles for Lakes Kulik, Nerka, and Little Togiak.

description: Temperature–depth profiles for Lakes Kulik, Nerka, and Little Togiak.
DOI: 10.6084/m9.figshare.3522728.v1
title: Appendix C. Temperature–depth profiles for Lakes Kulik, Nerka, and Little Togiak.

description: Temperature–depth profiles for Lakes Kulik, Nerka, and Little Togiak.
DOI: 10.6084/m9.figshare.3522725
title: Appendix A. A table showing key features of the reviewed studies.

description: A table showing key features of the reviewed studies.
DOI: 10.6084/m9.figshare.3522725.v1
title: Appendix A. A table showing key features of the reviewed studies.

description: A table showing key features of the reviewed studies.
DOI: 10.6084/m9.figshare.3522722
title: Appendix B. Tables presenting a summary of the reviewed studies.

description: Tables presenting a summary of the reviewed studies.
DOI: 10.6084/m9.figshare.3522722.v1
title: Appendix B. Tables presenting a summary of the reviewed studies.

description: Tables presenting a summary of the reviewed studies.
DOI: 10.6084/m9.figshare.3522719
title: Appendix A. Sampling methods and a table of quantitative density estimates of Lestes damselfly larvae and predators.

description: Sampling methods and a table of quantitative density estimates of Lestes damselfly larvae and predators.
DOI: 10.6084/m9.figshare.3522716
title: Appendix B. A description of the setup of the enclosure experiments.

description: A description of the setup of the enclosure experiments.
DOI: 10.6084/m9.figshare.3522713
title: Appendix A. Details on creation of host pots and trap pots for use in estimating A. columbi parasitism and density, respectively.

description: Details on creation of host pots and trap pots for use in estimating A. columbi parasitism and density, respectively.
DOI: 10.6084/m9.figshare.3522713.v1
title: Appendix A. Details on creation of host pots and trap pots for use in estimating A. columbi parasitism and density, respectively.

description: Details on creation of host pots and trap pots for use in estimating A. columbi parasitism and density, respectively.
DOI: 10.6084/m9.figshare.3522710
title: Appendix B. Census procedure and analyses of A. columbi distributions among cordgrass patches.

description: Census procedure and analyses of A. columbi distributions among cordgrass patches.
DOI: 10.6084/m9.figshare.3522710.v1
title: Appendix B. Census procedure and analyses of A. columbi distributions among cordgrass patches.

description: Census procedure and analyses of A. columbi distributions among cordgrass patches.
DOI: 10.6084/m9.figshare.3522707
title: Appendix C. A table of statistical results for contrasts between the patch interior and edge, and interior and matrix for three A. columbi response variables (density, proportion parasitized, and per capita hosts parasitized).

description: A table of statistical results for contrasts between the patch interior and edge, and interior and matrix for three A. columbi response variables (density, proportion parasitized, and per capita hosts parasitized).
DOI: 10.6084/m9.figshare.3522707.v1
title: Appendix C. A table of statistical results for contrasts between the patch interior and edge, and interior and matrix for three A. columbi response variables (density, proportion parasitized, and per capita hosts parasitized).

description: A table of statistical results for contrasts between the patch interior and edge, and interior and matrix for three A. columbi response variables (density, proportion parasitized, and per capita hosts parasitized).
DOI: 10.6084/m9.figshare.3522704
title: Appendix A. Field sampling techniques, matrix construction notes, and original transition matrices for five perennial plant species.

description: Field sampling techniques, matrix construction notes, and original transition matrices for five perennial plant species.
DOI: 10.6084/m9.figshare.3522701
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3522701.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3522698
title: Appendix A. A table of microhabitat use by morphotypes of Herichthys minckleyi.

description: A table of microhabitat use by morphotypes of Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522698.v1
title: Appendix A. A table of microhabitat use by morphotypes of Herichthys minckleyi.

description: A table of microhabitat use by morphotypes of Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522695
title: Appendix B. A table of feeding behaviors used by morphotypes of Herichthys minckleyi.

description: A table of feeding behaviors used by morphotypes of Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522695.v1
title: Appendix B. A table of feeding behaviors used by morphotypes of Herichthys minckleyi.

description: A table of feeding behaviors used by morphotypes of Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522692
title: Appendix C. A table of feeding behaviors in the two most commonly used microhabitats by Herichthys minckleyi.

description: A table of feeding behaviors in the two most commonly used microhabitats by Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522692.v1
title: Appendix C. A table of feeding behaviors in the two most commonly used microhabitats by Herichthys minckleyi.

description: A table of feeding behaviors in the two most commonly used microhabitats by Herichthys minckleyi.
DOI: 10.6084/m9.figshare.3522689
title: Appendix A. A community-disassembly table for the 13 species of mammals and birds at our field site in Dutchess County, New York, USA, giving parameters used in models relating vertebrate community composition to nymphal tick infection prevalence (NIP).

description: A community-disassembly table for the 13 species of mammals and birds at our field site in Dutchess County, New York, USA, giving parameters used in models relating vertebrate community composition to nymphal tick infection prevalence (NIP).
DOI: 10.6084/m9.figshare.3522689.v1
title: Appendix A. A community-disassembly table for the 13 species of mammals and birds at our field site in Dutchess County, New York, USA, giving parameters used in models relating vertebrate community composition to nymphal tick infection prevalence (NIP).

description: A community-disassembly table for the 13 species of mammals and birds at our field site in Dutchess County, New York, USA, giving parameters used in models relating vertebrate community composition to nymphal tick infection prevalence (NIP).
DOI: 10.6084/m9.figshare.3522686
title: Appendix A. Calculation of the optimal loading.

description: Calculation of the optimal loading.
DOI: 10.6084/m9.figshare.3522683
title: Appendix A. The forward filtering backward smoothing algorithm.

description: The forward filtering backward smoothing algorithm.
DOI: 10.6084/m9.figshare.3522680
title: Appendix A. A description of the Gibbs sampler, which uses Markov chain Monte Carlo (MCMC) methods.

description: A description of the Gibbs sampler, which uses Markov chain Monte Carlo (MCMC) methods.
DOI: 10.6084/m9.figshare.3522680.v1
title: Appendix A. A description of the Gibbs sampler, which uses Markov chain Monte Carlo (MCMC) methods.

description: A description of the Gibbs sampler, which uses Markov chain Monte Carlo (MCMC) methods.
DOI: 10.6084/m9.figshare.3522677
title: Appendix A. A Gibbs sampler for the hierarchical model.

description: A Gibbs sampler for the hierarchical model.
DOI: 10.6084/m9.figshare.3522674
title: Appendix A. A description of the parameterization of the stage-structured model.

description: A description of the parameterization of the stage-structured model.
DOI: 10.6084/m9.figshare.3522674.v1
title: Appendix A. A description of the parameterization of the stage-structured model.

description: A description of the parameterization of the stage-structured model.
DOI: 10.6084/m9.figshare.3522671
title: Appendix B. An explanation of calculating the main and total Sobol' indices by the Winding Stairs algorithm.

description: An explanation of calculating the main and total Sobol' indices by the Winding Stairs algorithm.
DOI: 10.6084/m9.figshare.3522671.v1
title: Appendix B. An explanation of calculating the main and total Sobol' indices by the Winding Stairs algorithm.

description: An explanation of calculating the main and total Sobol' indices by the Winding Stairs algorithm.
DOI: 10.6084/m9.figshare.3522668
title: Supplement 1. R source code for parameter estimation, model simulations, and calculation of Sobol' indices.

description: File List FitUnstructuredModel.R <br> IterateUnstructuredModel.R <br> BootstrapDistributionsStageModel.R <br> IterateStageModel.R <br> SobolandCI.R <br> All files (WinZip archive) <br> Description These are text files (readable by, e.g., Notepad or Wordpad on PCs or by any ASCII text-file editor). They contain R-language source code for the data analyses and model simulations in the paper. Because we are not at liberty to redistribute all of the original data used in the analyses, only some portions of these programs can be run by users. The purpose of presenting the complete source code is to document in full detail calculations that are described conceptually in the paper. A WinZip archive containing all the files is also provided. FitUnstructuredModel.R contains the statistical analyses behind the models for the distributions of Et and p4t for the unstructured models. As noted in the paper, we considered a number of models for p4t and only the final one is presented in the code here (a truncated logistic distribution). Users cannot run any portions of this code. IterateUnstructuredModel.R contains code for iterating the structured model, including iterations using bootstrap parameter distributions to account for parameter uncertainty. Users can run portions of this code. The top part of the code (which reads in data and fits models for Et and p4t) cannot be run by users. However at the comment line 'USERS START HERE' we insert 'by hand' the necessary numerical results from the analysis so that the rest of the code can be run, to replicate the process leading to Fig. 2 in the paper. BootstrapDistributionsStageModel.R contains code for generating the bootstrap distribution of model parameters for the stage-structured model, that is used for Sobol sensitivity indices and confidence interval calculations. Users cannot run any portions of this code. IterateStageModel.R contains code for an R function that simulates the stage-structured model using user-supplied parameters, and estimates the population growth rate as a function of parameter values by doing multiple simulations of the model. Users can run this file (which will load the model function into the current R workspace), but must supply parameter values when calling the function. SobolandCI.R contains code to calculate confidence intervals on population growth rate, and Sobol' sensitivity indices, for the structured population model. Users cannot run this code.
DOI: 10.6084/m9.figshare.3522668.v1
title: Supplement 1. R source code for parameter estimation, model simulations, and calculation of Sobol' indices.

description: File List FitUnstructuredModel.R <br> IterateUnstructuredModel.R <br> BootstrapDistributionsStageModel.R <br> IterateStageModel.R <br> SobolandCI.R <br> All files (WinZip archive) <br> Description These are text files (readable by, e.g., Notepad or Wordpad on PCs or by any ASCII text-file editor). They contain R-language source code for the data analyses and model simulations in the paper. Because we are not at liberty to redistribute all of the original data used in the analyses, only some portions of these programs can be run by users. The purpose of presenting the complete source code is to document in full detail calculations that are described conceptually in the paper. A WinZip archive containing all the files is also provided. FitUnstructuredModel.R contains the statistical analyses behind the models for the distributions of Et and p4t for the unstructured models. As noted in the paper, we considered a number of models for p4t and only the final one is presented in the code here (a truncated logistic distribution). Users cannot run any portions of this code. IterateUnstructuredModel.R contains code for iterating the structured model, including iterations using bootstrap parameter distributions to account for parameter uncertainty. Users can run portions of this code. The top part of the code (which reads in data and fits models for Et and p4t) cannot be run by users. However at the comment line 'USERS START HERE' we insert 'by hand' the necessary numerical results from the analysis so that the rest of the code can be run, to replicate the process leading to Fig. 2 in the paper. BootstrapDistributionsStageModel.R contains code for generating the bootstrap distribution of model parameters for the stage-structured model, that is used for Sobol sensitivity indices and confidence interval calculations. Users cannot run any portions of this code. IterateStageModel.R contains code for an R function that simulates the stage-structured model using user-supplied parameters, and estimates the population growth rate as a function of parameter values by doing multiple simulations of the model. Users can run this file (which will load the model function into the current R workspace), but must supply parameter values when calling the function. SobolandCI.R contains code to calculate confidence intervals on population growth rate, and Sobol' sensitivity indices, for the structured population model. Users cannot run this code.
DOI: 10.6084/m9.figshare.3522665
title: Appendix A. A description of the second-order expansion for mean density.

description: A description of the second-order expansion for mean density.
DOI: 10.6084/m9.figshare.3522665.v1
title: Appendix A. A description of the second-order expansion for mean density.

description: A description of the second-order expansion for mean density.
DOI: 10.6084/m9.figshare.3522662
title: Appendix B. A description of the definitions and methods for invasion speeds.

description: A description of the definitions and methods for invasion speeds.
DOI: 10.6084/m9.figshare.3522662.v1
title: Appendix B. A description of the definitions and methods for invasion speeds.

description: A description of the definitions and methods for invasion speeds.
DOI: 10.6084/m9.figshare.3522659
title: Appendix A. A table providing results of two-way ANOVA on the effect of Japanese dace and year on the number of macroinvertebrates, abundance of chlorophyll a, and the growth rates of ayu and Japanese dace in experiment 1.

description: A table providing results of two-way ANOVA on the effect of Japanese dace and year on the number of macroinvertebrates, abundance of chlorophyll a, and the growth rates of ayu and Japanese dace in experiment 1.
DOI: 10.6084/m9.figshare.3522659.v1
title: Appendix A. A table providing results of two-way ANOVA on the effect of Japanese dace and year on the number of macroinvertebrates, abundance of chlorophyll a, and the growth rates of ayu and Japanese dace in experiment 1.

description: A table providing results of two-way ANOVA on the effect of Japanese dace and year on the number of macroinvertebrates, abundance of chlorophyll a, and the growth rates of ayu and Japanese dace in experiment 1.
DOI: 10.6084/m9.figshare.3522656
title: Appendix A. Simulation tests of multistrata mark–recapture modeling for undetectable strata.

description: Simulation tests of multistrata mark–recapture modeling for undetectable strata.
DOI: 10.6084/m9.figshare.3522653
title: Appendix A. The distribution of sizes for all cordgrass patches located within Site 104.

description: The distribution of sizes for all cordgrass patches located within Site 104.
DOI: 10.6084/m9.figshare.3522656.v1
title: Appendix A. Simulation tests of multistrata mark–recapture modeling for undetectable strata.

description: Simulation tests of multistrata mark–recapture modeling for undetectable strata.
DOI: 10.6084/m9.figshare.3522653.v1
title: Appendix A. The distribution of sizes for all cordgrass patches located within Site 104.

description: The distribution of sizes for all cordgrass patches located within Site 104.
DOI: 10.6084/m9.figshare.3522650
title: Appendix B. Evidence that fluorescent powders do not adversely affect planthopper survivorship or dispersal ability.

description: Evidence that fluorescent powders do not adversely affect planthopper survivorship or dispersal ability.
DOI: 10.6084/m9.figshare.3522650.v1
title: Appendix B. Evidence that fluorescent powders do not adversely affect planthopper survivorship or dispersal ability.

description: Evidence that fluorescent powders do not adversely affect planthopper survivorship or dispersal ability.
DOI: 10.6084/m9.figshare.3522647
title: Appendix C. A description of a simple and heterogeneous diffusion model used to predict planthopper redistribution in space.

description: A description of a simple and heterogeneous diffusion model used to predict planthopper redistribution in space.
DOI: 10.6084/m9.figshare.3522647.v1
title: Appendix C. A description of a simple and heterogeneous diffusion model used to predict planthopper redistribution in space.

description: A description of a simple and heterogeneous diffusion model used to predict planthopper redistribution in space.
DOI: 10.6084/m9.figshare.3522644
title: Appendix D. The census procedure and analyses of planthopper distributions in nature.

description: The census procedure and analyses of planthopper distributions in nature.
DOI: 10.6084/m9.figshare.3522644.v1
title: Appendix D. The census procedure and analyses of planthopper distributions in nature.

description: The census procedure and analyses of planthopper distributions in nature.
DOI: 10.6084/m9.figshare.3522641
title: Appendix E. The fit of a simple Gaussian diffusion model to the redistribution of female planthoppers in a homogeneous or heterogeneous landscape.

description: The fit of a simple Gaussian diffusion model to the redistribution of female planthoppers in a homogeneous or heterogeneous landscape.
DOI: 10.6084/m9.figshare.3522641.v1
title: Appendix E. The fit of a simple Gaussian diffusion model to the redistribution of female planthoppers in a homogeneous or heterogeneous landscape.

description: The fit of a simple Gaussian diffusion model to the redistribution of female planthoppers in a homogeneous or heterogeneous landscape.
DOI: 10.6084/m9.figshare.3522638
title: Appendix F. A table of statistical tests for the effect of patch size, isolation, and planthopper abundance on planthopper distributions over five generations.

description: A table of statistical tests for the effect of patch size, isolation, and planthopper abundance on planthopper distributions over five generations.
DOI: 10.6084/m9.figshare.3522638.v1
title: Appendix F. A table of statistical tests for the effect of patch size, isolation, and planthopper abundance on planthopper distributions over five generations.

description: A table of statistical tests for the effect of patch size, isolation, and planthopper abundance on planthopper distributions over five generations.
DOI: 10.6084/m9.figshare.3522635
title: Appendix A. Data on landscape properties and plant species diversity in ancient and recent forests of Europe and eastern North America.

description: Data on landscape properties and plant species diversity in ancient and recent forests of Europe and eastern North America.
DOI: 10.6084/m9.figshare.3522635.v1
title: Appendix A. Data on landscape properties and plant species diversity in ancient and recent forests of Europe and eastern North America.

description: Data on landscape properties and plant species diversity in ancient and recent forests of Europe and eastern North America.
DOI: 10.6084/m9.figshare.3522632
title: Appendix B. Details on methods of data acquisition and analysis for studies on plant diversity in ancient and recent forests that includes sufficient information to calculate estimates of the proportions of the landscape in ancient (PA) and recent (PR) forest.

description: Details on methods of data acquisition and analysis for studies on plant diversity in ancient and recent forests that includes sufficient information to calculate estimates of the proportions of the landscape in ancient (PA) and recent (PR) forest.
DOI: 10.6084/m9.figshare.3522632.v1
title: Appendix B. Details on methods of data acquisition and analysis for studies on plant diversity in ancient and recent forests that includes sufficient information to calculate estimates of the proportions of the landscape in ancient (PA) and recent (PR) forest.

description: Details on methods of data acquisition and analysis for studies on plant diversity in ancient and recent forests that includes sufficient information to calculate estimates of the proportions of the landscape in ancient (PA) and recent (PR) forest.
DOI: 10.6084/m9.figshare.3522629
title: Appendix A. Figures showing sensitivity analyses of how functional forms affect the sizes of trait- and density-mediated indirect effects vs. resource levels.

description: Figures showing sensitivity analyses of how functional forms affect the sizes of trait- and density-mediated indirect effects vs. resource levels.
DOI: 10.6084/m9.figshare.3522629.v1
title: Appendix A. Figures showing sensitivity analyses of how functional forms affect the sizes of trait- and density-mediated indirect effects vs. resource levels.

description: Figures showing sensitivity analyses of how functional forms affect the sizes of trait- and density-mediated indirect effects vs. resource levels.
DOI: 10.6084/m9.figshare.3522626
title: Appendix A. A worked example of spatial covariance in plant communities.

description: A worked example of spatial covariance in plant communities.
DOI: 10.6084/m9.figshare.3522626.v1
title: Appendix A. A worked example of spatial covariance in plant communities.

description: A worked example of spatial covariance in plant communities.
DOI: 10.6084/m9.figshare.3522623
title: Appendix A. A description of independent variables, the sampling methods used, and results of univariate analyses.

description: A description of independent variables, the sampling methods used, and results of univariate analyses.
DOI: 10.6084/m9.figshare.3522623.v1
title: Appendix A. A description of independent variables, the sampling methods used, and results of univariate analyses.

description: A description of independent variables, the sampling methods used, and results of univariate analyses.
DOI: 10.6084/m9.figshare.3522620
title: Appendix B. Procedures for the stepwise multiple regression used in this study.

description: Procedures for the stepwise multiple regression used in this study.
DOI: 10.6084/m9.figshare.3522620.v1
title: Appendix B. Procedures for the stepwise multiple regression used in this study.

description: Procedures for the stepwise multiple regression used in this study.
DOI: 10.6084/m9.figshare.3522617
title: Appendix A. A construction of the effective geographic distance matrix.

description: A construction of the effective geographic distance matrix.
DOI: 10.6084/m9.figshare.3522617.v1
title: Appendix A. A construction of the effective geographic distance matrix.

description: A construction of the effective geographic distance matrix.
DOI: 10.6084/m9.figshare.3522614
title: Appendix A. Environmental data for each study site and experimental period.

description: Environmental data for each study site and experimental period.