cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5255/ukda-sn-856288
title: Economic Risk, Resources and Environment Model, 2016-2021

description: Economic Risk, Resources and Environment (ERRE) is a system dynamics model whose purpose is to analyse the financial pressures emerging from global economic growth while coping with natural limits in both energy and agricultural systems. A major feature of the model is to integrate in the same framework both the dynamic evolution of long term phenomena (e.g. energy transition, climate effects) and the short to medium term structures that are more relevant to decision making in the real world (e.g. extreme weather effects, irrational behaviours of markets). Building on the World3-03 Limits to Growth model, ERRE links the financial system with the energy, agriculture and climate systems through the real economy, by means of feedback loops, time lags and non-linear rationally bounded decision making. Prices and their interaction with growth, inflation and interest rates are assumed to be the main driver of economic failure while reaching planetary limits. Developed within the the CUSP System Dynamics theme, the model allows for the stress-testing of fat tail extreme risk scenarios, such as climate shocks, energy transition, monetary policies and carbon taxes. Risks are addressed via scenario analyses, compared to real available data, and assessed in terms of the economic theory that lies behind.
DOI: 10.5285/03c935c6890c4b2ebf4aae4d84cd9472
title: ESA Lakes Climate Change Initiative (Lakes_cci): Lake products, Version 2.0.1

description: This dataset contains the Lakes Essential Climate Variable, which is comprised of processed satellite observations at the global scale, over the period 1992-2020, for over 2000 inland water bodies. This dataset was produced by the European Space Agency (ESA) Lakes Climate Change Initiative (Lakes_cci) project. For more information about the Lakes_cci please visit the project website. This is version 2.0.1 of the dataset. The five thematic climate variables included in this dataset are: • Lake Water Level (LWL), derived from satellite altimetry, is fundamental to understand the balance between water inputs and water loss and their connection with regional and global climate change. • Lake Water Extent (LWE), modelled from the relation between LWL and high-resolution spatial extent observed at set time-points, describes the areal extent of the water body. This allows the observation of drought in arid environments, expansion in high Asia, or impact of large-scale atmospheric oscillations on lakes in tropical regions for example. . • Lake Surface Water temperature (LSWT), derived from optical and thermal satellite observations, is correlated with regional air temperatures and is informative about vertical mixing regimes, driving biogeochemical cycling and seasonality. • Lake Ice Cover (LIC), determined from optical observations, describes the freeze-up in autumn and break-up of ice in spring, which are proxies for gradually changing climate patterns and seasonality. • Lake Water-Leaving Reflectance (LWLR), derived from optical satellite observations, is a direct indicator of biogeochemical processes and habitats in the visible part of the water column (e.g. seasonal phytoplankton biomass fluctuations), and an indicator of the frequency of extreme events (peak terrestrial run-off, changing mixing conditions). Data generated in the Lakes_cci are derived from multiple satellite sensors including: TOPEX/Poseidon, Jason, ENVISAT, SARAL, Sentinel 2-3, Landsat OLI, ERS, MODIS Terra/Aqua and Metop. Detailed information about the generation and validation of this dataset is available from the Lakes_cci documentation available on the project website.
DOI: 10.5281/zenodo.7186868
title: Processed results supporting MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics

description: Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics". Processed PSM, ion, peptide, and protein tables for each search are provided, sorted by figure within the zip file. FragPipe workflows with parameters are also provided for all searches.
DOI: 10.5281/zenodo.7661299
title: Processed results supporting MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics

description: Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics". Processed PSM, ion, peptide, and protein tables for each search are provided, sorted by figure within the zip file. FragPipe workflows with parameters are also provided for all searches.
DOI: 10.5281/zenodo.7186867
title: Processed results supporting MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics

description: Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics". Processed PSM, ion, peptide, and protein tables for each search are provided, sorted by figure within the zip file. FragPipe workflows with parameters are also provided for all searches.
DOI: 10.17863/cam.68134
title: Unpublished description by M.R. James of Cambridge, University Library, MS Ll.4.3 (Iohannes de Caulibus (attrib. to pseudo-Bonaventure), The Mirror of the Blessed Life of Jesus Christ, trans. into Middle English by Nicholas Love)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.25345/c55h7c41q
title: MassIVE MSV000091334 - Signatures of native-like glycosylation in RNA replicon-derived HIV-1 immunogens
title: Signatures of native-like glycosylation in RNA replicon-derived HIV-1 immunogens
DOI: 10.6084/m9.figshare.22134827
title: ERBC telemetry database 24 drug V2.2

description: This new version of the ERBC telemetry database includes analysis of telemetry data for 24 drugs including 15 torsadogenic drugs This database reports drug-induced cardiovascular effects on blood pressure (abdominal aortic pressure), heart rate, QT and QTc interval, PQ interval. It also includes modelling data of haemodynamic effects on central aortic pressure, stroke volume, cardiac output and systemic vascular resistances (AUCsys model) and modelling of effects on the autonomic nervous system (HFAM model).
DOI: 10.6084/m9.figshare.22134827.v1
title: ERBC telemetry database 24 drug V2.2

description: This new version of the ERBC telemetry database includes analysis of telemetry data for 24 drugs including 15 torsadogenic drugs This database reports drug-induced cardiovascular effects on blood pressure (abdominal aortic pressure), heart rate, QT and QTc interval, PQ interval. It also includes modelling data of haemodynamic effects on central aortic pressure, stroke volume, cardiac output and systemic vascular resistances (AUCsys model) and modelling of effects on the autonomic nervous system (HFAM model).
DOI: 10.15151/esrf-es-1057907650
title: Investigation of the structural symmetry of homomeric coiled-coil peptides using BioSAXS

description: The development of functional materials through the formation of supramolecular assemblies is a critical approach in Nature and biomimetics. Here, we will explore the formation of higher-order structures through the directed assembly of α-helical peptides. In particular, the design of the amino acid sequence with non-canonical residues allows the programming of the coiled coils, as shown by our spectroscopic and electron microscopy characterisation. Here, we will perform a detailed determination of the structure of the hierarchical assembly as a function of the peptide architecture, where changes in the size of the side chains control the formation of different oligomers on demand.
DOI: 10.6084/m9.figshare.22134861
title: Sub-regional analysis of the parotid glands: model development for predicting late xerostomia with radiomics features in head and neck cancer patients

description: <b>Background:</b> The irradiation of sub-regions of the parotid has been linked to xerostomia development in patients with head and neck cancer (HNC). In this study, we compared the xerostomia classification performance of radiomics features calculated on clinically relevant and de novo sub-regions of the parotid glands of HNC patients. <b>Material and Methods:</b> All patients (<i>N</i> = 117) were treated with TomoTherapy in 30–35 fractions of 2–2.167 Gy per fraction with daily mega-voltage-CT (MVCT) acquisition for image-guidance purposes. Radiomics features (<i>N</i> = 123) were extracted from daily MVCTs for the whole parotid gland and nine sub-regions. The changes in feature values after each complete week of treatment were considered as predictors of xerostomia (CTCAEv4.03, grade ≥ 2) at 6 and 12 months. Combinations of predictors were generated following the removal of statistically redundant information and stepwise selection. The classification performance of the logistic regression models was evaluated on train and test sets of patients using the Area Under the Curve (AUC) associated with the different sub-regions at each week of treatment and benchmarked with the performance of models solely using dose and toxicity at baseline. <b>Results:</b> In this study, radiomics-based models predicted xerostomia better than standard clinical predictors. Models combining dose to the parotid and xerostomia scores at baseline yielded an AUC<sub>test</sub> of 0.63 and 0.61 for xerostomia prediction at 6 and 12 months after radiotherapy while models based on radiomics features extracted from the whole parotid yielded a maximum AUC<sub>test</sub> of 0.67 and 0.75, respectively. Overall, across sub-regions, maximum AUC<sub>test</sub> was 0.76 and 0.80 for xerostomia prediction at 6 and 12 months. Within the first two weeks of treatment, the cranial part of the parotid systematically yielded the highest AUC<sub>test</sub>. <b>Conclusion:</b> Our results indicate that variations of radiomics features calculated on sub-regions of the parotid glands can lead to earlier and improved prediction of xerostomia in HNC patients.
DOI: 10.6084/m9.figshare.22134861.v1
title: Sub-regional analysis of the parotid glands: model development for predicting late xerostomia with radiomics features in head and neck cancer patients

description: <b>Background:</b> The irradiation of sub-regions of the parotid has been linked to xerostomia development in patients with head and neck cancer (HNC). In this study, we compared the xerostomia classification performance of radiomics features calculated on clinically relevant and de novo sub-regions of the parotid glands of HNC patients. <b>Material and Methods:</b> All patients (<i>N</i> = 117) were treated with TomoTherapy in 30–35 fractions of 2–2.167 Gy per fraction with daily mega-voltage-CT (MVCT) acquisition for image-guidance purposes. Radiomics features (<i>N</i> = 123) were extracted from daily MVCTs for the whole parotid gland and nine sub-regions. The changes in feature values after each complete week of treatment were considered as predictors of xerostomia (CTCAEv4.03, grade ≥ 2) at 6 and 12 months. Combinations of predictors were generated following the removal of statistically redundant information and stepwise selection. The classification performance of the logistic regression models was evaluated on train and test sets of patients using the Area Under the Curve (AUC) associated with the different sub-regions at each week of treatment and benchmarked with the performance of models solely using dose and toxicity at baseline. <b>Results:</b> In this study, radiomics-based models predicted xerostomia better than standard clinical predictors. Models combining dose to the parotid and xerostomia scores at baseline yielded an AUC<sub>test</sub> of 0.63 and 0.61 for xerostomia prediction at 6 and 12 months after radiotherapy while models based on radiomics features extracted from the whole parotid yielded a maximum AUC<sub>test</sub> of 0.67 and 0.75, respectively. Overall, across sub-regions, maximum AUC<sub>test</sub> was 0.76 and 0.80 for xerostomia prediction at 6 and 12 months. Within the first two weeks of treatment, the cranial part of the parotid systematically yielded the highest AUC<sub>test</sub>. <b>Conclusion:</b> Our results indicate that variations of radiomics features calculated on sub-regions of the parotid glands can lead to earlier and improved prediction of xerostomia in HNC patients.
DOI: 10.6084/m9.figshare.21379066.v1
title: Prevention of submicron aerosolized particle dispersion: evaluation of an aerosol box using a pediatric simulation model

description: <b>Background and Aim:</b> The SplashGuard CG (SG) is a barrier enclosure developed to protect healthcare workers from SARS-CoV-2 transmission during aerosol-generating procedures. Our objective was to evaluate the protection provided by the SG against aerosolized particles (AP), using a pediatric simulation model of spontaneous ventilation (SV) and noninvasive ventilation (NIV). <b>Methods:</b> An aerosol generator was connected to the airways of a pediatric high-fidelity manikin with a breathing simulator. AP concentrations were measured both in SV and NIV in the following conditions: with and without SG, inside and outside the SG, with and without suction applied to the device. <b>Results:</b> In the SV simulated setting, AP peaks were lower with SG: 0.1 × 10<sup>5</sup> particles/L compared to without: 1.6 × 10<sup>5</sup>, only when the ports were closed and suction applied. In the NIV simulated setting, AP peaks outside the SG were lower than without SG (20.5 × 10<sup>5</sup> particles/L), whatever the situation, without suction (14.4 × 10<sup>5</sup>particles/L), with suction and ports open or closed: 10.3 and 0.7 × 10<sup>5</sup> particles/L. In SV and NIV simulated settings, the AP peaks measured within the SG were much higher than the AP peaks measured without SG, even when suction was applied to the device. <b>Conclusions:</b> The SG seems to decrease peak AP exposure in the 2 ventilation contexts, but only with closed port and suction in SV. However, high concentrations of AP remain inside even with suction and SG should be used cautiously.
DOI: 10.6084/m9.figshare.21564720
title: Changes in lung sialidases in male and female mice after bleomycin aspiration

description: <b>Aim of the study:</b> Sialidases, also called neuraminidases, are enzymes that cleave terminal sialic acids from glycoconjugates. In humans and mice, lung fibrosis is associated with desialylation of glycoconjugates and upregulation of sialidases. There are four mammalian sialidases, and it is unclear when the four mammalian sialidases are elevated over the course of inflammatory and fibrotic responses, whether tissue resident and inflammatory cells express different sialidases, and if sialidases are differentially expressed in male and females. <b>Materials and Methods:</b> To determine the time course of sialidase expression and the identity of sialidase expressing cells, we used the bleomycin model of pulmonary fibrosis in mice to examine levels of sialidases during inflammation (days 3 − 10) and fibrosis (days 10 − 21). <b>Results:</b> Bleomycin aspiration increased sialidase NEU1 at days 14 and 21 in male mice and day 10 in female mice. NEU2 levels increased at day 7 in male and day 10 in female mice. NEU3 appears to have a biphasic response in male mice with increased levels at day 7 and then at days 14 and 21, whereas in female mice NEU3 levels increased over 21 days. In control mice, the sialidases were mainly expressed by EpCAM positive epithelial cells, but after bleomycin, epithelial cells, CD45 positive immune cells, and alveolar cells expressed NEU1, NEU2, and NEU3. Sialidase expression was higher in male compared to female mice. There was little expression of NEU4 in murine lung tissue. <b>Conclusions:</b> These results suggest that sialidases are dynamically expressed following bleomycin, that sialidases are differentially expressed in male and females, and that of the four sialidases only NEU3 upregulation is associated with fibrosis in both male and female mice.
DOI: 10.6084/m9.figshare.21564720.v4
title: Changes in lung sialidases in male and female mice after bleomycin aspiration

description: <b>Aim of the study:</b> Sialidases, also called neuraminidases, are enzymes that cleave terminal sialic acids from glycoconjugates. In humans and mice, lung fibrosis is associated with desialylation of glycoconjugates and upregulation of sialidases. There are four mammalian sialidases, and it is unclear when the four mammalian sialidases are elevated over the course of inflammatory and fibrotic responses, whether tissue resident and inflammatory cells express different sialidases, and if sialidases are differentially expressed in male and females. <b>Materials and Methods:</b> To determine the time course of sialidase expression and the identity of sialidase expressing cells, we used the bleomycin model of pulmonary fibrosis in mice to examine levels of sialidases during inflammation (days 3 − 10) and fibrosis (days 10 − 21). <b>Results:</b> Bleomycin aspiration increased sialidase NEU1 at days 14 and 21 in male mice and day 10 in female mice. NEU2 levels increased at day 7 in male and day 10 in female mice. NEU3 appears to have a biphasic response in male mice with increased levels at day 7 and then at days 14 and 21, whereas in female mice NEU3 levels increased over 21 days. In control mice, the sialidases were mainly expressed by EpCAM positive epithelial cells, but after bleomycin, epithelial cells, CD45 positive immune cells, and alveolar cells expressed NEU1, NEU2, and NEU3. Sialidase expression was higher in male compared to female mice. There was little expression of NEU4 in murine lung tissue. <b>Conclusions:</b> These results suggest that sialidases are dynamically expressed following bleomycin, that sialidases are differentially expressed in male and females, and that of the four sialidases only NEU3 upregulation is associated with fibrosis in both male and female mice.
DOI: 10.6084/m9.figshare.21564720.v3
title: Changes in lung sialidases in male and female mice after bleomycin aspiration

description: <b>Aim of the study:</b> Sialidases, also called neuraminidases, are enzymes that cleave terminal sialic acids from glycoconjugates. In humans and mice, lung fibrosis is associated with desialylation of glycoconjugates and upregulation of sialidases. There are four mammalian sialidases, and it is unclear when the four mammalian sialidases are elevated over the course of inflammatory and fibrotic responses, whether tissue resident and inflammatory cells express different sialidases, and if sialidases are differentially expressed in male and females. <b>Materials and Methods:</b> To determine the time course of sialidase expression and the identity of sialidase expressing cells, we used the bleomycin model of pulmonary fibrosis in mice to examine levels of sialidases during inflammation (days 3 − 10) and fibrosis (days 10 − 21). <b>Results:</b> Bleomycin aspiration increased sialidase NEU1 at days 14 and 21 in male mice and day 10 in female mice. NEU2 levels increased at day 7 in male and day 10 in female mice. NEU3 appears to have a biphasic response in male mice with increased levels at day 7 and then at days 14 and 21, whereas in female mice NEU3 levels increased over 21 days. In control mice, the sialidases were mainly expressed by EpCAM positive epithelial cells, but after bleomycin, epithelial cells, CD45 positive immune cells, and alveolar cells expressed NEU1, NEU2, and NEU3. Sialidase expression was higher in male compared to female mice. There was little expression of NEU4 in murine lung tissue. <b>Conclusions:</b> These results suggest that sialidases are dynamically expressed following bleomycin, that sialidases are differentially expressed in male and females, and that of the four sialidases only NEU3 upregulation is associated with fibrosis in both male and female mice.
DOI: 10.34740/kaggle/dsv/5038044
title: Car detection mini dataset
DOI: 10.5517/ccdc.csd.cc221w78
title: CCDC 1908429: Experimental Crystal Structure Determination

description: Related Article: Xiaohe Wang, Mingyuan Lei, Tianjun Zhang, Qingfu Zhang|2021|Dalton Trans.|50|3816|doi:10.1039/D0DT03049J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc22zv97
title: CCDC 1936269: Experimental Crystal Structure Determination

description: Related Article: Siriporn Saepua, Jittra Kornsakulkarn, Patchanee Auncharoen, Pranee Rachtawee, Surisa Kongthong, Nattawut Boonyuen, David J. Harding, Tatsuo Nehira, Tienthong Thongpanchang, Chawanee Thongpanchang|2020|Nat.Prod.Res.|35|3556|doi:10.1080/14786419.2020.1713119
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24x1hm
title: CCDC 1993160: Experimental Crystal Structure Determination

description: Related Article: Dmytro Sysoiev, Eliška Procházková, Aleksander Semenenko, Radek Pohl, Svitlana Shishkina, Blanka Klepetářová, Volodymyr Shvadchak, Dmytro A. Yushchenko|2020|ChemPlusChem|85|2084|doi:10.1002/cplu.202000481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24x1jn
title: CCDC 1993161: Experimental Crystal Structure Determination

description: Related Article: Dmytro Sysoiev, Eliška Procházková, Aleksander Semenenko, Radek Pohl, Svitlana Shishkina, Blanka Klepetářová, Volodymyr Shvadchak, Dmytro A. Yushchenko|2020|ChemPlusChem|85|2084|doi:10.1002/cplu.202000481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.