cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ytrjjf
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT PRINTF('%04d-%02d', "year", "month") AS yearMonth, decimalLatitude AS lat, decimalLongitude AS lon, family, familyKey, genus, genusKey, species, speciesKey, iucnRedListCategory FROM occurrence WHERE iucnRedListCategory IN ('EW','EX') AND occurrenceStatus = 'PRESENT' AND countryCode = 'ES' AND speciesKey = 359 AND hasCoordinate = TRUE AND (coordinateUncertaintyInMeters &lt;= 1000 OR coordinateUncertaintyInMeters IS NULL) AND speciesKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "month" IS NOT NULL GROUP BY yearMonth, lat, lon, familyKey, family, genusKey, genus, speciesKey, species, iucnRedListCategory

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019016-240626123714530/datasets/export for details.
DOI: 10.15468/dl.j6pndm
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eragrostis minor Host"
 ]
}

 The dataset includes 62 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019024-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6yc93
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Solidago fallax (Fernald) Semple, Solidago canadensis var. fallax (Fernald) Beaudry, Solidago elongata var. fallax (Fernald) G.N.Jones, Solidago lepida subsp. fallax (Fernald) Semple, Solidago lepida var. fallax Fernald)"
 ]
}

 The dataset includes 323 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019023-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12704446
title: JWST-JupiterSPR-MIRI benzene and Aerosol retrieval

description: In this dataset you can find the benzene abundance for the three MIRI/JWST tiles, noted as obsX, where x is the number of the tile. In each directory, wou will find three folders noted as 'c6h6...' indicating the peak altitude for the c6h6 profile. In obs2 you will also find the results for the optical depth of the aerosols in the 'hazes...' directories.
DOI: 10.5281/zenodo.12704447
title: JWST-JupiterSPR-MIRI benzene and Aerosol retrieval

description: In this dataset you can find the benzene abundance for the three MIRI/JWST tiles, noted as obsX, where x is the number of the tile. In each directory, wou will find three folders noted as 'c6h6...' indicating the peak altitude for the c6h6 profile. In obs2 you will also find the results for the optical depth of the aerosols in the 'hazes...' directories.
DOI: 10.57745/o5roaf
title: Table 1.2 Steps list.tab

description: :unav
DOI: 10.57745/xotwrb
title: Specific surface.txt

description: :unav
DOI: 10.57745/b1mnvv
title: True density.txt

description: :unav
DOI: 10.57745/enanf2
title: Color.txt

description: :unav
DOI: 10.57745/i2busg
title: Biochemical composition.txt

description: :unav
DOI: 10.57745/nd41cu
title: Particle size.txt

description: :unav
DOI: 10.57745/ogsqpz
title: SEM pictures.txt

description: :unav
DOI: 10.57745/oopchf
title: FTIR spectra.txt

description: :unav
DOI: 10.15468/dl.er24ew
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis inexpectatus Garrido & Estrada, 1989"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019026-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/hyexu9
title: Table 1.1 Feedstocks provenance.tab

description: :unav
DOI: 10.57745/qdoijo
title: Particle shape.txt

description: :unav
DOI: 10.57745/tb80ob
title: Table 1.1 feedstocks provenance.sparql

description: :unav
DOI: 10.57745/w6zu9t
title: Water sorption properties.txt

description: :unav
DOI: 10.57745/xseozr
title: Spectrofluorimetry.txt

description: :unav
DOI: 10.57745/zx2u3z
title: Thermogravimetric analysis.txt

description: :unav
DOI: 10.57745/2wrnjg
title: Table 1.3 Steps and controled parameters list.tab

description: :unav
DOI: 10.57745/cxsmgd
title: Consultation of a PO2 project using PO2 Manager.mp4

description: :unav
DOI: 10.57745/mrjmtq
title: SPARQL query execution with SPO2Q.mp4

description: :unav
DOI: 10.57745/n3supo
title: Table 1.2 Steps list.sparql

description: :unav
DOI: 10.57745/ogayhr
title: Table 1.3 Steps and controled parameters list.sparql

description: :unav
DOI: 10.15468/dl.ztahfk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Argyreia kerrii Craib",
 "Year 2000-2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019027-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26181092.v1
title: Supplementary Material for: Diverging trends in survival and functional outcome between males and females after intracerebral hemorrhage

description: Background
Compared to ischemic stroke, sex differences in patient outcome following intracerebral hemorrhage (ICH) is underreported. We aimed to determine sex differences in mortality and functional outcome in a large, unselected Swedish cohort.

Methods
In this observational study, data on 22789 patients with spontaneous ICH registered in the Swedish Stroke Register between 2012–2019 were used to compare sex differences in 90-day mortality and functional outcome using multivariable Cox and logistic regression analyses, adjusting for relevant confounders. Multiple imputation was used to impute missing data.

Results
The crude 90-day mortality rate was 36.7% in females (3820/10405) and 31.7% in males (3929/12384) (female Hazard Ratio (HR) 1.20 95%CI: 1.15–1.25). In multivariable analysis, the HR for 90-day mortality following ICH in females was 0.89 (95%CI: 0.85–0.94). Age was an important driving factor for the effect of sex on mortality. After adjustment for age, vascular risk factors, and stroke severity, 90-day functional outcome in prestroke independent patients was worse in females compared to males (OR 1.27 95%CI: 1.16–1.40). 

Conclusion
In this large observational study, despite a lower 90-day mortality, female sex was independently associated with a worse functional outcome compared to males after ICH, even after adjusting for significant covariates. These diverging trends have not been previously reported for ICH. Given the observational design, our findings should be interpreted with caution, thus further external validation is warranted.
DOI: 10.6084/m9.figshare.26181092.v2
title: Supplementary Material for: Diverging trends in survival and functional outcome between males and females after intracerebral hemorrhage

description: Background
Compared to ischemic stroke, sex differences in patient outcome following intracerebral hemorrhage (ICH) is underreported. We aimed to determine sex differences in mortality and functional outcome in a large, unselected Swedish cohort.

Methods
In this observational study, data on 22789 patients with spontaneous ICH registered in the Swedish Stroke Register between 2012–2019 were used to compare sex differences in 90-day mortality and functional outcome using multivariable Cox and logistic regression analyses, adjusting for relevant confounders. Multiple imputation was used to impute missing data.

Results
The crude 90-day mortality rate was 36.7% in females (3820/10405) and 31.7% in males (3929/12384) (female Hazard Ratio (HR) 1.20 95%CI: 1.15–1.25). In multivariable analysis, the HR for 90-day mortality following ICH in females was 0.89 (95%CI: 0.85–0.94). Age was an important driving factor for the effect of sex on mortality. After adjustment for age, vascular risk factors, and stroke severity, 90-day functional outcome in prestroke independent patients was worse in females compared to males (OR 1.27 95%CI: 1.16–1.40). 

Conclusion
In this large observational study, despite a lower 90-day mortality, female sex was independently associated with a worse functional outcome compared to males after ICH, even after adjusting for significant covariates. These diverging trends have not been previously reported for ICH. Given the observational design, our findings should be interpreted with caution, thus further external validation is warranted.
DOI: 10.5281/zenodo.12703231
title: Abundance Trend Indicator - Models, Prediction, Stacked Environmental Data and Training Set Similarity

description: # Readme

These trained models can be used to predict the abundance trends of New Zealand's forest species and can be used together with the code in https://github.com/lnilya/abundance-trend-indicator

Since the process of using the models requires coding expertise and some setting up, please make sure to reach out to ilya.shabanov@vuw.ac.nz for any questions. All files will require the code in the repository to be read and used. 

If you want to explore the results generated with these models, please visit https://ati-nz-predictions-7e6f3d514735.herokuapp.com/ for a user-friendly, interactive UI.

## Contents

_models: Contains the trained models (Artificial Neural Network (ANN), Random Forest (RF), SVMW (Support vector machine) and GLM (logistic regression)) at different degrees of noise filtering, different datasets and variable sets. The model files also contain test and training scores. To load the files please refer to the readme in the code repository: ttps://github.com/lnilya/abundance-trend-indicator

_predictions/_environment: Contains the predictor variables for the study area (New Zealand, 1950-2019) that are needed by the models to make predictions. 

_predictions/_similarity: Contains the masks of areas that can be predicted by models and are similar to the training set.

_predictions/_ati: Contain the predicted results for the abundance trend. These can be explored on https://ati-nz-predictions-7e6f3d514735.herokuapp.com/
DOI: 10.5281/zenodo.12703232
title: Abundance Trend Indicator - Models, Prediction, Stacked Environmental Data and Training Set Similarity

description: # Readme

These trained models can be used to predict the abundance trends of New Zealand's forest species and can be used together with the code in https://github.com/lnilya/abundance-trend-indicator

Since the process of using the models requires coding expertise and some setting up, please make sure to reach out to ilya.shabanov@vuw.ac.nz for any questions. All files will require the code in the repository to be read and used. 

If you want to explore the results generated with these models, please visit https://ati-nz-predictions-7e6f3d514735.herokuapp.com/ for a user-friendly, interactive UI.

## Contents

_models: Contains the trained models (Artificial Neural Network (ANN), Random Forest (RF), SVMW (Support vector machine) and GLM (logistic regression)) at different degrees of noise filtering, different datasets and variable sets. The model files also contain test and training scores. To load the files please refer to the readme in the code repository: ttps://github.com/lnilya/abundance-trend-indicator

_predictions/_environment: Contains the predictor variables for the study area (New Zealand, 1950-2019) that are needed by the models to make predictions. 

_predictions/_similarity: Contains the masks of areas that can be predicted by models and are similar to the training set.

_predictions/_ati: Contain the predicted results for the abundance trend. These can be explored on https://ati-nz-predictions-7e6f3d514735.herokuapp.com/
DOI: 10.6084/m9.figshare.26232812
title: Supplementary Dataset1 and 2

description: N-terminal acetyltransferase B (NatB) is a major contributor to the N-terminal acetylome and is implicated in several key cellular processes including apoptosis and proteostasis. However, the molecular mechanisms linking NatB-mediated N-terminal acetylation to apoptosis and its relationship with protein homeostasis remain elusive. In this study, we generated mouse embryonic fibroblasts (MEFs) with an inactivated catalytic subunit of NatB (<i>Naa20</i><sup>-/-</sup>) to investigate the impact of NatB deficiency on apoptosis regulation. Through quantitative N-terminomics, label-free quantification, and targeted proteomics, we demonstrated that NatB does not influence the proteostasis of all its substrates. Instead, our focus on putative NatB-dependent apoptotic factors revealed that NatB serves as a protective shield against UBR4 and UBR1 Arg/N-recognin-mediated degradation. Notably, <i>Naa20</i><sup>-/-</sup> MEFs exhibited reduced responsiveness to an extrinsic pro-apoptotic stimulus, a phenotype that was partially reversible upon UBR4 Arg/N-recognin silencing and consequent inhibition of procaspase-8 degradation. Collectively, our results shed light on how the interplay between NatB-mediated acetylation and the Arg/N-degron pathway appears to impact apoptosis regulation, providing new perspectives in the field including in therapeutic interventions.[MOU1]I prefer can
DOI: 10.6084/m9.figshare.26232812.v1
title: Supplementary Dataset1

description: N-terminal acetyltransferase B (NatB) is a major contributor to the N-terminal acetylome and is implicated in several key cellular processes including apoptosis and proteostasis. However, the molecular mechanisms linking NatB-mediated N-terminal acetylation to apoptosis and its relationship with protein homeostasis remain elusive. In this study, we generated mouse embryonic fibroblasts (MEFs) with an inactivated catalytic subunit of NatB (<i>Naa20</i><sup>-/-</sup>) to investigate the impact of NatB deficiency on apoptosis regulation. Through quantitative N-terminomics, label-free quantification, and targeted proteomics, we demonstrated that NatB does not influence the proteostasis of all its substrates. Instead, our focus on putative NatB-dependent apoptotic factors revealed that NatB serves as a protective shield against UBR4 and UBR1 Arg/N-recognin-mediated degradation. Notably, <i>Naa20</i><sup>-/-</sup> MEFs exhibited reduced responsiveness to an extrinsic pro-apoptotic stimulus, a phenotype that was partially reversible upon UBR4 Arg/N-recognin silencing and consequent inhibition of procaspase-8 degradation. Collectively, our results shed light on how the interplay between NatB-mediated acetylation and the Arg/N-degron pathway appears to impact apoptosis regulation, providing new perspectives in the field including in therapeutic interventions.[MOU1]I prefer can
DOI: 10.6084/m9.figshare.26232812.v2
title: Supplementary Dataset1 and 2

description: N-terminal acetyltransferase B (NatB) is a major contributor to the N-terminal acetylome and is implicated in several key cellular processes including apoptosis and proteostasis. However, the molecular mechanisms linking NatB-mediated N-terminal acetylation to apoptosis and its relationship with protein homeostasis remain elusive. In this study, we generated mouse embryonic fibroblasts (MEFs) with an inactivated catalytic subunit of NatB (<i>Naa20</i><sup>-/-</sup>) to investigate the impact of NatB deficiency on apoptosis regulation. Through quantitative N-terminomics, label-free quantification, and targeted proteomics, we demonstrated that NatB does not influence the proteostasis of all its substrates. Instead, our focus on putative NatB-dependent apoptotic factors revealed that NatB serves as a protective shield against UBR4 and UBR1 Arg/N-recognin-mediated degradation. Notably, <i>Naa20</i><sup>-/-</sup> MEFs exhibited reduced responsiveness to an extrinsic pro-apoptotic stimulus, a phenotype that was partially reversible upon UBR4 Arg/N-recognin silencing and consequent inhibition of procaspase-8 degradation. Collectively, our results shed light on how the interplay between NatB-mediated acetylation and the Arg/N-degron pathway appears to impact apoptosis regulation, providing new perspectives in the field including in therapeutic interventions.[MOU1]I prefer can
DOI: 10.15468/dl.mf66r2
title: Occurrence Download

description: A dataset containing 2461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-3.05842 52.84881,-3.05641 52.84901,-3.05468 52.84978,-3.05374 52.85123,-3.05073 52.85304,-3.04781 52.85262,-3.0466 52.85075,-3.0449 52.8459,-3.04348 52.84219,-3.0423 52.84073,-3.03981 52.84219,-3.03898 52.84122,-3.03714 52.84191,-3.02979 52.84815,-3.0309 52.84933,-3.03281 52.85106,-3.03339 52.85234,-3.03547 52.85342,-3.03755 52.85397,-3.03825 52.85252,-3.04015 52.85269,-3.03877 52.85484,-3.0327 52.85557,-3.03222 52.85713,-3.02799 52.85796,-3.02809 52.86253,-3.03031 52.86711,-3.03423 52.86926,-3.03638 52.86888,-3.04199 52.86683,-3.04438 52.86818,-3.04463 52.8695,-3.0545 52.8687,-3.05565 52.86732,-3.06251 52.86766,-3.06282 52.86638,-3.06171 52.86496,-3.06099 52.86281,-3.06376 52.86316,-3.06584 52.86479,-3.06854 52.86392,-3.07107 52.86156,-3.07125 52.85869,-3.07048 52.85751,-3.06976 52.85362,-3.06792 52.85276,-3.06587 52.85362,-3.06282 52.85567,-3.06126 52.85404,-3.06698 52.85054,-3.06716 52.8496,-3.06459 52.84732,-3.06272 52.84707,-3.06119 52.84714,-3.0604 52.84843,-3.05842 52.84881))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2004-2024"
 ]
}

 The dataset includes 2461 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019029-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rrcyz
title: Occurrence Download

description: A dataset listing the 86 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Switzerland",
 "DatasetKey is one of (EOD – eBird Observation Dataset, Swiss National Butterflies and Forester Moths Databank, Swiss National Moths Databank, Swiss National Coleoptera Databank, Swiss National Grasshoppers Databank, Swiss National Dragonflies Databank, Swiss National Mammal Databank, Swiss National Apoidea Databank, Swiss National Amphibian Databank, Swiss National Mollusca Databank)",
 "Geometry POLYGON((9.53508 47.27115,9.59493 47.27115,9.59493 47.33036,9.53508 47.33036,9.53508 47.27115))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 86 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019025-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhwq5v
title: Occurrence Download

description: A dataset containing 2461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-3.05842 52.84881,-3.05641 52.84901,-3.05468 52.84978,-3.05374 52.85123,-3.05073 52.85304,-3.04781 52.85262,-3.0466 52.85075,-3.0449 52.8459,-3.04348 52.84219,-3.0423 52.84073,-3.03981 52.84219,-3.03898 52.84122,-3.03714 52.84191,-3.02979 52.84815,-3.0309 52.84933,-3.03281 52.85106,-3.03339 52.85234,-3.03547 52.85342,-3.03755 52.85397,-3.03825 52.85252,-3.04015 52.85269,-3.03877 52.85484,-3.0327 52.85557,-3.03222 52.85713,-3.02799 52.85796,-3.02809 52.86253,-3.03031 52.86711,-3.03423 52.86926,-3.03638 52.86888,-3.04199 52.86683,-3.04438 52.86818,-3.04463 52.8695,-3.0545 52.8687,-3.05565 52.86732,-3.06251 52.86766,-3.06282 52.86638,-3.06171 52.86496,-3.06099 52.86281,-3.06376 52.86316,-3.06584 52.86479,-3.06854 52.86392,-3.07107 52.86156,-3.07125 52.85869,-3.07048 52.85751,-3.06976 52.85362,-3.06792 52.85276,-3.06587 52.85362,-3.06282 52.85567,-3.06126 52.85404,-3.06698 52.85054,-3.06716 52.8496,-3.06459 52.84732,-3.06272 52.84707,-3.06119 52.84714,-3.0604 52.84843,-3.05842 52.84881))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2004-2024"
 ]
}

 The dataset includes 2461 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019030-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12688713
title: Silene uralensis aggregate, circumpolar species : dataset, Miseq Illumina RAW READS

description: This dataset includes 43 samples of circumpolar species included in the Silene uralensis aggregate, sensu http://panarcticflora.org/. Forty-eight low copy nuclear genes were enriched with Silene-specific probes. The samples were sequenced with the Miseq technology from the short read Illumina platform. An excel sheet with samples information is included.

Two other datasets are associated to this one, called "Silene uralensis aggregate, circumpolar species : dataset, Novaseq Illumina RAW READS SET 1" on Zenodo 10.5281/zenodo.12699639 and "Silene uralensis aggregate, circumpolar species : dataset, Novaseq Illumina RAW READS SET 2" on Zenodo 10.5281/zenodo.12700012. These three datasets belong to a study about phylogenetics in the circumpolar Silene uralensis aggregate.
DOI: 10.5281/zenodo.12688714
title: Silene uralensis aggregate, circumpolar species : dataset, Miseq Illumina RAW READS

description: This dataset includes 43 samples of circumpolar species included in the Silene uralensis aggregate, sensu http://panarcticflora.org/. Forty-eight low copy nuclear genes were enriched with Silene-specific probes. The samples were sequenced with the Miseq technology from the short read Illumina platform. An excel sheet with samples information is included.

Two other datasets are associated to this one, called "Silene uralensis aggregate, circumpolar species : dataset, Novaseq Illumina RAW READS SET 1" on Zenodo 10.5281/zenodo.12699639 and "Silene uralensis aggregate, circumpolar species : dataset, Novaseq Illumina RAW READS SET 2" on Zenodo 10.5281/zenodo.12700012. These three datasets belong to a study about phylogenetics in the circumpolar Silene uralensis aggregate.
DOI: 10.15468/dl.n9j79q
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis incredulus Garrido & Moreno, 1998"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019031-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.