cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12279884
title: Biodiversity and ecosystem functioning across gradients in spatial scale

description: Biodiversity is critical for sustaining ecosystem functioning. Our inference, however, is based mainly on studies that have kept spatial scale constant and environmental heterogeneity to a minimum. We thus still know little about how the role of biodiversity changes with spatial scale and environmental heterogeneity. In this study we performed computer simulations to explore how the relationship between species richness and ecosystem functioning could be expected to change when local patches are aggregated into landscapes of increasing size. The expectations were tested in an experiment with five strains of E. coli under five different environmental conditions (defined by different sub-inhibitory antibiotics). We included all 31 possible strain combinations for each environment, yielding 155 unique local patch configurations and a total of 13860 patches with replication.
DOI: 10.6084/m9.figshare.12279875
title: Table S1 from Diet quantity influences caste determination in honeybees (<i>Apis mellifera</i>)

description: Survival by treatment
DOI: 10.6084/m9.figshare.12279869
title: Supporting Information from Evolution of conditional cooperation in public good games

description: Cooperation declines in repeated public good games because individuals behave as conditional cooperators. This is because individuals imitate the social behaviour of successful individuals when their payoff information is available. However, in human societies, individuals cooperate in many situations involving social dilemmas. We hypothesize that humans are sensitive to both success (payoffs) and how that success was obtained, by cheating (not socially sanctioned) or good behaviour (socially sanctioned and adds to prestige or reputation), when information is available about payoffs and prestige. We propose and model a repeated public good game with heterogeneous conditional cooperators where an agent's donation in a public goods game depends on comparing the number of donations in the population in the previous round and with the agent's arbitrary chosen conditional cooperative criterion. Such individuals imitate the social behaviour of role models based on their payoffs and prestige. The dependence is modelled by two population-level parameters: <i>affinity towards payoff</i> and <i>affinity towards prestige</i>. These affinities influence the degree to which agents value the payoff and prestige of role models. Agents update their conditional strategies by considering both parameters. The simulations in this study show that high levels of cooperation are established in a population consisting of heterogeneous conditional cooperators for a certain range of affinity parameters in repeated public good games. The results show that social value (prestige) is important in establishing cooperation.
DOI: 10.6084/m9.figshare.12279875.v1
title: Table S1 from Diet quantity influences caste determination in honeybees (<i>Apis mellifera</i>)

description: Survival by treatment
DOI: 10.6084/m9.figshare.12279884.v1
title: Biodiversity and ecosystem functioning across gradients in spatial scale

description: Biodiversity is critical for sustaining ecosystem functioning. Our inference, however, is based mainly on studies that have kept spatial scale constant and environmental heterogeneity to a minimum. We thus still know little about how the role of biodiversity changes with spatial scale and environmental heterogeneity. In this study we performed computer simulations to explore how the relationship between species richness and ecosystem functioning could be expected to change when local patches are aggregated into landscapes of increasing size. The expectations were tested in an experiment with five strains of E. coli under five different environmental conditions (defined by different sub-inhibitory antibiotics). We included all 31 possible strain combinations for each environment, yielding 155 unique local patch configurations and a total of 13860 patches with replication.
DOI: 10.6084/m9.figshare.12279869.v1
title: Supporting Information from Evolution of conditional cooperation in public good games

description: Cooperation declines in repeated public good games because individuals behave as conditional cooperators. This is because individuals imitate the social behaviour of successful individuals when their payoff information is available. However, in human societies, individuals cooperate in many situations involving social dilemmas. We hypothesize that humans are sensitive to both success (payoffs) and how that success was obtained, by cheating (not socially sanctioned) or good behaviour (socially sanctioned and adds to prestige or reputation), when information is available about payoffs and prestige. We propose and model a repeated public good game with heterogeneous conditional cooperators where an agent's donation in a public goods game depends on comparing the number of donations in the population in the previous round and with the agent's arbitrary chosen conditional cooperative criterion. Such individuals imitate the social behaviour of role models based on their payoffs and prestige. The dependence is modelled by two population-level parameters: <i>affinity towards payoff</i> and <i>affinity towards prestige</i>. These affinities influence the degree to which agents value the payoff and prestige of role models. Agents update their conditional strategies by considering both parameters. The simulations in this study show that high levels of cooperation are established in a population consisting of heterogeneous conditional cooperators for a certain range of affinity parameters in repeated public good games. The results show that social value (prestige) is important in establishing cooperation.
DOI: 10.6084/m9.figshare.12279845
title: R Functions Behavioural inference of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R Script containing the functions associated to the R Script Behavioural inference of sea turtle
DOI: 10.6084/m9.figshare.12279851
title: R Script Behavioural inference of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R-script containing the overall procedure to automatically predict the behaviours from raw acceleration, angular speed and depth data
DOI: 10.6084/m9.figshare.12279857
title: Flow_Dataset.sav

description: This data was collected to understand the employees behaviors, experienes as well as wellbeing at work. Main variabels included as: strengths use, work flow, risk-taking and attention.
DOI: 10.6084/m9.figshare.12279842
title: R Script Visualisation of the raw data associated with the behaviours of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R script containing the required package and script to visualise the raw acceleration signals associated with the behavioural labels of the immature green turtles
DOI: 10.6084/m9.figshare.12279845.v1
title: R Functions Behavioural inference of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R Script containing the functions associated to the R Script Behavioural inference of sea turtle
DOI: 10.6084/m9.figshare.12279842.v1
title: R Script Visualisation of the raw data associated with the behaviours of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R script containing the required package and script to visualise the raw acceleration signals associated with the behavioural labels of the immature green turtles
DOI: 10.6084/m9.figshare.12279851.v1
title: R Script Behavioural inference of sea turtle from Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology

description: R-script containing the overall procedure to automatically predict the behaviours from raw acceleration, angular speed and depth data
DOI: 10.6084/m9.figshare.12279806
title: Dataset of article: How do short sleepers use extra waking hours? A compositional analysis of 24-hour time-use patterns among children and adolescents

description: This file contains data for an article entitled: "How do short sleepers use extra waking hours? A compositional analysis of 24-hour time-use patterns among children and adolescents" published in the International Journal of Behavioral Nutrition and Physical Activity.
DOI: 10.6084/m9.figshare.12279797
title: Appendix 1 - Supplementary tables from Phylogenomics indicates Amazonia as the major source of Neotropical swarm-founding social wasp diversity

description: Table S1 Sequencing, assembly and UCE statistics for all samples included in this study. Table S2 Statistics for all matrices analyzed in this study. Table S3 Likelihood values, branch lengths and clocklikeness score for each RAxML tree generated using different partitioning schemes. Table S4 Calibrations used for BEAST divergence time. Table S5 Sampling probabilities used as input for the program BAMM. Table S6 Summary of support values from phylogenetic analyses.
DOI: 10.6084/m9.figshare.12279773
title: Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

description: List of samples and metadata included in the analyses.
DOI: 10.6084/m9.figshare.12279773.v2
title: Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

description: List of samples and metadata included in the analyses.
DOI: 10.6084/m9.figshare.12279773.v1
title: Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

description: List of samples and metadata included in the analyses.
DOI: 10.6084/m9.figshare.12279743
title: NifH sequences from a temperate inverse estuary in southern Australia.

description: Seawater samples were collected from Spencer Gulf and the adjacent continental shelf waters during Austral autumn and summer 2014. Microbial cells within 2 L surface seawater were concentrated on membrane filters, DNA extracted, and <i>nifH</i> gene fragments amplified by PCR and subject to pyrosequencing.
DOI: 10.6084/m9.figshare.12279746
title: Supplementary Material for: Profiling of the Peripheral Blood Mononuclear Cell Proteome in Schizophrenia and Mood Disorders for the Discovery of Discriminatory Biomarkers: A Proof-of-Concept Study

description: <b><i>Introduction:</i></b> Current diagnoses in psychiatry are solely based on the evaluation of clinical presentation by the treating psychiatrist. This results in a high percentage of misdiagnosis and consequential inefficient treatment; especially regarding major depressive disorder (MDD), depression in the context of bipolar disorder (BD-D), bipolar disorder with manic symptoms (BD-M), and psychosis in the context of schizophrenia (SZ). Objective biomarkers allowing for accurate discriminatory diagnostics are therefore urgently needed. <b><i>Methods:</i></b> Peripheral blood mononuclear cell (PBMC) proteomes of patients with MDD (<i>n</i> = 5) , BD-D (<i>n</i> = 3), BD-M (<i>n</i> = 4), and SZ (<i>n</i> = 4), and also of healthy controls (HC; <i>n</i> = 6) were analyzed by state-of-the-art mass spectrometry. Proteins with a differential expression of a &gt;2 standard deviation (SD) expression fold change from that of the HC and between either MDD versus BD-D or BD-M versus SZ were subsequently identified as potential discriminatory biomarkers. <b><i>Results:</i></b> In total, 4,271 individual proteins were retrieved from the HC. Of these, about 2,800 were detected in all patient and HC samples. For objective discrimination between MDD and BD-D, 66 candidate biomarkers were found. In parallel, 72 proteins might harbor a biomarker capacity for differential diagnostics of BD-M and SZ. A single biomarker was contraregulated versus HC in each pair of comparisons. <b><i>Discussion:</i></b> With this work, we provide a register of candidate biomarkers with the potential to objectively discriminate MDD from BD-D, and BD-M from SZ. Although concerning a proof-of-concept study with limited sample size, these data provide a stepping-stone for follow-up research on the validation of the true discriminatory potential and feasibility of clinical implementation of the discovered biomarker candidates.
DOI: 10.6084/m9.figshare.12279743.v1
title: NifH sequences from a temperate inverse estuary in southern Australia.

description: Seawater samples were collected from Spencer Gulf and the adjacent continental shelf waters during Austral autumn and summer 2014. Microbial cells within 2 L surface seawater were concentrated on membrane filters, DNA extracted, and <i>nifH</i> gene fragments amplified by PCR and subject to pyrosequencing.
DOI: 10.6084/m9.figshare.12279746.v1
title: Supplementary Material for: Profiling of the Peripheral Blood Mononuclear Cell Proteome in Schizophrenia and Mood Disorders for the Discovery of Discriminatory Biomarkers: A Proof-of-Concept Study

description: <b><i>Introduction:</i></b> Current diagnoses in psychiatry are solely based on the evaluation of clinical presentation by the treating psychiatrist. This results in a high percentage of misdiagnosis and consequential inefficient treatment; especially regarding major depressive disorder (MDD), depression in the context of bipolar disorder (BD-D), bipolar disorder with manic symptoms (BD-M), and psychosis in the context of schizophrenia (SZ). Objective biomarkers allowing for accurate discriminatory diagnostics are therefore urgently needed. <b><i>Methods:</i></b> Peripheral blood mononuclear cell (PBMC) proteomes of patients with MDD (<i>n</i> = 5) , BD-D (<i>n</i> = 3), BD-M (<i>n</i> = 4), and SZ (<i>n</i> = 4), and also of healthy controls (HC; <i>n</i> = 6) were analyzed by state-of-the-art mass spectrometry. Proteins with a differential expression of a &gt;2 standard deviation (SD) expression fold change from that of the HC and between either MDD versus BD-D or BD-M versus SZ were subsequently identified as potential discriminatory biomarkers. <b><i>Results:</i></b> In total, 4,271 individual proteins were retrieved from the HC. Of these, about 2,800 were detected in all patient and HC samples. For objective discrimination between MDD and BD-D, 66 candidate biomarkers were found. In parallel, 72 proteins might harbor a biomarker capacity for differential diagnostics of BD-M and SZ. A single biomarker was contraregulated versus HC in each pair of comparisons. <b><i>Discussion:</i></b> With this work, we provide a register of candidate biomarkers with the potential to objectively discriminate MDD from BD-D, and BD-M from SZ. Although concerning a proof-of-concept study with limited sample size, these data provide a stepping-stone for follow-up research on the validation of the true discriminatory potential and feasibility of clinical implementation of the discovered biomarker candidates.
DOI: 10.6084/m9.figshare.12279713
title: Data for "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"

description: Behavior and conversation data analyzed in "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"
DOI: 10.6084/m9.figshare.12279701
title: Supplementary Material for: Contribution of Immune-Mediated Paraneoplastic Syndromes to Neurological Manifestations of Neuroendocrine Tumours: A Retrospective Study

description: <b><i>Introduction:</i></b> Neurological symptoms associated with neuroendocrine tumours (NETs) may be related to metastatic disease or paraneoplastic syndromes (PNSs); these last are often associated with autoantibodies targeting various onconeural antigens. To better characterize neurological PNSs related to NETs, we report the largest case-series study to date. <b><i>Methods:</i></b> We retrospectively reviewed the charts of all patients diagnosed with NETs of the gastrointestinal tract who presented with neurological symptoms at either of 2 tertiary academic hospitals (Henri Mondor and Beaujon, France) between 1994 and 2016. All patients underwent extensive neurological tests including clinical, laboratory, and radiological investigations. The clinical response to immunomodulating agents was recorded. <b><i>Results:</i></b> In the 13 identified patients, the most common presentations were peripheral neuropathy (46.2%) and encephalopathy (26.6%). Of the 6 (53.3%) patients whose serum anti-neuronal antibodies were assayed, 5 had high titres. Short-term oral corticosteroid and immunosuppressant drug therapy was given to 4 of these patients, of whom 3 had a clinical response and 1 no response. Repeated high-dose intravenous immunoglobulin therapy induced a complete clinical response in 1 patient. Encephalopathy resolved fully after hepatectomy or intrahepatic chemoembolization for liver metastases in another 2 patients. <b><i>Discussion:</i></b> The neurological symptoms associated with NETs may be due in part to autoimmune PNS. Based on experience at our 2 centres, we estimate that autoimmune PNS occurs in about 1% of patients with NETs. Early symptom recognition allows the initiation of effective treatments including corticosteroids, immunosuppressive drugs, and/or intravenous immunoglobulins.
DOI: 10.6084/m9.figshare.12279701.v1
title: Supplementary Material for: Contribution of Immune-Mediated Paraneoplastic Syndromes to Neurological Manifestations of Neuroendocrine Tumours: A Retrospective Study

description: <b><i>Introduction:</i></b> Neurological symptoms associated with neuroendocrine tumours (NETs) may be related to metastatic disease or paraneoplastic syndromes (PNSs); these last are often associated with autoantibodies targeting various onconeural antigens. To better characterize neurological PNSs related to NETs, we report the largest case-series study to date. <b><i>Methods:</i></b> We retrospectively reviewed the charts of all patients diagnosed with NETs of the gastrointestinal tract who presented with neurological symptoms at either of 2 tertiary academic hospitals (Henri Mondor and Beaujon, France) between 1994 and 2016. All patients underwent extensive neurological tests including clinical, laboratory, and radiological investigations. The clinical response to immunomodulating agents was recorded. <b><i>Results:</i></b> In the 13 identified patients, the most common presentations were peripheral neuropathy (46.2%) and encephalopathy (26.6%). Of the 6 (53.3%) patients whose serum anti-neuronal antibodies were assayed, 5 had high titres. Short-term oral corticosteroid and immunosuppressant drug therapy was given to 4 of these patients, of whom 3 had a clinical response and 1 no response. Repeated high-dose intravenous immunoglobulin therapy induced a complete clinical response in 1 patient. Encephalopathy resolved fully after hepatectomy or intrahepatic chemoembolization for liver metastases in another 2 patients. <b><i>Discussion:</i></b> The neurological symptoms associated with NETs may be due in part to autoimmune PNS. Based on experience at our 2 centres, we estimate that autoimmune PNS occurs in about 1% of patients with NETs. Early symptom recognition allows the initiation of effective treatments including corticosteroids, immunosuppressive drugs, and/or intravenous immunoglobulins.
DOI: 10.6084/m9.figshare.12279713.v2
title: Data for "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"

description: Behavior and conversation data analyzed in "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"
DOI: 10.6084/m9.figshare.12279713.v1
title: Data for "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"

description: Behavior and conversation data analyzed in "Social deliberation systematically shifts resource allocation decisions by focusing on the fate of the least well-off"
DOI: 10.6084/m9.figshare.12279692
title: Supplementary Material for: Longitudinal Changes in Kidney Function Estimated from Cystatin C and Its Association with Mortality in Elderly Women

description: <b><i>Background/Aims:</i></b> Prospective data on age-related changes in kidney function are required, especially since the current Kidney Disease Improving Global Outcomes (KDIGO) definition has been suggested to classify a large number of elderly people with CKD. <b><i>Objective:</i></b> This study, a complement to our previous Cr-based study in the same cohort, is aimed at evaluating cystatin C (cysC)-based changes in kidney function during aging in older women and analyzing the association between CKD and mortality through 10 years of follow-up. <b><i>Methods:</i></b> cysC was available in 981 women from the Osteoporosis Prospective Risk Assessment (OPRA) cohort, all aged 75 years on entry. Reinvestigations were made after 5 (<i>n</i> = 685) and 10 years (<i>n</i> = 365). Kidney function was estimated (estimated glomerular filtration rate [eGFR]) using Chronic Kidney Disease Epidemiology Collaboration cysC and Caucasian, Asian, Pediatric, and Adult cysC equations and the change in function calculated. Women were staged equivalent to CKD stage 1, 2, 3a, or 3b–5 according to the KDIGO classification. Mortality risk was estimated for 5-year or 10-year follow-up time using Cox proportional hazard analyses (reference category, CKD stages 1 and 2). <b><i>Results:</i></b> Mortality risk for women with the worst kidney function (CKD stages 3b–5) increased during both 5-year follow-up times compared to that for women in stages 1 and 2 (age 75–80 years: adjusted Hazard Ratio [HR<sub>adj</sub>] 3.9, 95% confidence interval [CI] 2.3–6.5; age 80–85 years: HR<sub>adj</sub> 1.7, 95% CI 1.0–2.7). In contrast, women in stage 3a had increased risk only in the first 5-year follow-up (HR<sub>adj</sub> 1.7, 95% CI 1.0–3.0, age 75–80 years). Change in kidney function amounted to a loss of 1.9 (±1.4) mL/min/1.73 m<sup>2</sup> per year during the 10-year follow-up, and at age 85 years, 4 of every 5 women had an eGFR equivalent to CKD. <b><i>Conclusion:</i></b> In the future, an age-adapted definition of CKD, lowering the threshold for CKD in the elderly, may be beneficial to avoid overdiagnosis of CKD.
DOI: 10.6084/m9.figshare.12279662
title: Marmot burrow data from Cold War spy satellite images reveal long-term declines of a philopatric keystone species in response to cropland expansion

description: Data on marmot burrow counts for 2 time periods (historical and contemporary) as well as related environmental and anthropogenic variables associated to the plot locations.
DOI: 10.6084/m9.figshare.12279662.v1
title: Marmot burrow data from Cold War spy satellite images reveal long-term declines of a philopatric keystone species in response to cropland expansion

description: Data on marmot burrow counts for 2 time periods (historical and contemporary) as well as related environmental and anthropogenic variables associated to the plot locations.