cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24128726
title: DNA methylation biomarkers to identify epigenetically abnormal spermatozoa in male partners from couples experiencing recurrent pregnancy loss

description: Previously, we showed that DNA methylation defects in spermatozoa from male partners of couples undergoing recurrent pregnancy loss (RPL) could be a contributing paternal factor. In the present study, we aimed to determine whether the methylation levels of selected imprinted genes can be used as diagnostic markers to identify epigenetically abnormal spermatozoa sample in these cases. The methylation levels of selected imprinted genes in spermatozoa, which were previously found to be differentially methylated, were combined into a probability score (between 0–1) using multiple logistic regression. Different combinations of these genes were investigated using Receiver Operating Characteristic analysis, and the threshold values were experimentally validated in an independent cohort of 38 control and 45 RPL spermatozoa samples. Among the different combinations investigated, a combination of five imprinted genes comprising IGF2-H19 DMR, IG-DMR, ZAC, KvDMR, and PEG3 (AUC = 0.88) with a threshold value of 0.61 was selected with a specificity of 90.41% and sensitivity of 70%. The results from the validation study indicated that 97% of the control samples had probability scores below this threshold, whereas 40% of the RPL samples were above this threshold with a post-hoc power of 97.8%. Thus, this combination can correctly classify control samples and potentially identify epigenetically abnormal spermatozoa samples in the male partners of couples undergoing RPL. We propose that the combined DNA methylation levels of these imprinted genes can be used as a diagnostic tool to identify spermatozoa samples with epigenetic defects which could contribute to the pathophysiology of RPL and the couple could be counselled appropriately.
DOI: 10.6084/m9.figshare.24128726.v1
title: DNA methylation biomarkers to identify epigenetically abnormal spermatozoa in male partners from couples experiencing recurrent pregnancy loss

description: Previously, we showed that DNA methylation defects in spermatozoa from male partners of couples undergoing recurrent pregnancy loss (RPL) could be a contributing paternal factor. In the present study, we aimed to determine whether the methylation levels of selected imprinted genes can be used as diagnostic markers to identify epigenetically abnormal spermatozoa sample in these cases. The methylation levels of selected imprinted genes in spermatozoa, which were previously found to be differentially methylated, were combined into a probability score (between 0–1) using multiple logistic regression. Different combinations of these genes were investigated using Receiver Operating Characteristic analysis, and the threshold values were experimentally validated in an independent cohort of 38 control and 45 RPL spermatozoa samples. Among the different combinations investigated, a combination of five imprinted genes comprising IGF2-H19 DMR, IG-DMR, ZAC, KvDMR, and PEG3 (AUC = 0.88) with a threshold value of 0.61 was selected with a specificity of 90.41% and sensitivity of 70%. The results from the validation study indicated that 97% of the control samples had probability scores below this threshold, whereas 40% of the RPL samples were above this threshold with a post-hoc power of 97.8%. Thus, this combination can correctly classify control samples and potentially identify epigenetically abnormal spermatozoa samples in the male partners of couples undergoing RPL. We propose that the combined DNA methylation levels of these imprinted genes can be used as a diagnostic tool to identify spermatozoa samples with epigenetic defects which could contribute to the pathophysiology of RPL and the couple could be counselled appropriately.
DOI: 10.5281/zenodo.8339232
title: [IO Islamic 1064] لطيفۀ فيّاضى

description: <strong>Laṭîfa-i-Fayyâḍî.</strong> <strong>This manuscript is now IO Islamic 1479 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1064 here with notations and hyperlinks].</strong> 1479 Laṭîfa-i-Fayyâḍî(لطيفۀ فيّاضى ). The correspondence of Faiḍî, collected by Nûr-aldîn Muḥammad, the son of Ḥakîm ‘Ain-almulk and nephew of the poet (see fol. 3<sup>b</sup>, l. 13 sq.), A.H. 1035 (A.D. 1625, 1626), see Rieu ii. p. 792, iii. p. 984, etc.; Elliot, History of India, vi. pp. 147-149. It is styled here simply انشاء فيضى ; the proper title, as given above, is a chronogram for the date of the collection. Ḥakîm ‘Ain-almulk of Shîrâz, the father of the collector, died the 27th of Dhû-alḥijjah, A.H. 1003 (A.D. 1595, Sept. 2), see his biography in Blochmann, Â’în-i-Akbarî, pp. 480 and 481; he had married a sister of Faiḍî and Abû-alfaḍl. The work is divided into five chapters, called لطيفه, viz.: 1.Letters addressed to the Emperor Akbar (عرائض فيّاضى بوالا درگاه خلائق پناه ظلّ الهى شاهنشاه جلال الدّين و الدّنيا اكبر پادشاه), on fol. 7<sup>b</sup>. 2.Letters addressed to ‘Ulamâs and Ṣûfic Shaikhs (مفاوضات فيضى بشرفاى عظام و علماى علاّم و عرفاى معرفت انتظام ), on fol. 51<sup>b</sup>. 3.Letters addressed to contemporary physicians (مفاوضات كه بحكماء معاصر قلمى شده), on fol. 93<sup>b</sup>. 4.Letters addressed to Amîrs, Khâns, etc. ( بامراء عظام و خوانين الكرام), on fol. 116<sup>a</sup>. 5.Letters addressed to his father, brothers, and other relatives ( رقائمى كه بوالد بزرگوار و اخوان و اقارب قلمى شده), on fol. 129<sup>a</sup>; the last letters are all addressed to his brother Abû-alfaḍl. Another brother of his was Abû-alkhair. The five laṭîfas are preceded by Faiḍi’s preface to his diwân (see No. 1464 above), beginning here with the initial bait of the first ḳaṣîdah: يا ازلىّ الظّهور يا ابدىّ الخفا الخ . The three manṭûḳas and the khâtimah which, according to Faiḍi’s own statement, were to follow after the five laṭîfas, are wanting in this copy, just as in Rieu’s. Dated the 22nd of Shawwâl, in the fourth year of ‘Âlamgîr’s reign (=A.H. 1072, A.D. 1662, June 10). No. 1064, ff. 136, ll. 17; Nasta’lîḳ; size, 7<sup>7/8</sup> in. by 4<sup>1/4</sup> in.
DOI: 10.5281/zenodo.8339231
title: [IO Islamic 1064] لطيفۀ فيّاضى

description: <strong>Laṭîfa-i-Fayyâḍî.</strong> <strong>This manuscript is now IO Islamic 1479 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1064 here with notations and hyperlinks].</strong> 1479 Laṭîfa-i-Fayyâḍî(لطيفۀ فيّاضى ). The correspondence of Faiḍî, collected by Nûr-aldîn Muḥammad, the son of Ḥakîm ‘Ain-almulk and nephew of the poet (see fol. 3<sup>b</sup>, l. 13 sq.), A.H. 1035 (A.D. 1625, 1626), see Rieu ii. p. 792, iii. p. 984, etc.; Elliot, History of India, vi. pp. 147-149. It is styled here simply انشاء فيضى ; the proper title, as given above, is a chronogram for the date of the collection. Ḥakîm ‘Ain-almulk of Shîrâz, the father of the collector, died the 27th of Dhû-alḥijjah, A.H. 1003 (A.D. 1595, Sept. 2), see his biography in Blochmann, Â’în-i-Akbarî, pp. 480 and 481; he had married a sister of Faiḍî and Abû-alfaḍl. The work is divided into five chapters, called لطيفه, viz.: 1.Letters addressed to the Emperor Akbar (عرائض فيّاضى بوالا درگاه خلائق پناه ظلّ الهى شاهنشاه جلال الدّين و الدّنيا اكبر پادشاه), on fol. 7<sup>b</sup>. 2.Letters addressed to ‘Ulamâs and Ṣûfic Shaikhs (مفاوضات فيضى بشرفاى عظام و علماى علاّم و عرفاى معرفت انتظام ), on fol. 51<sup>b</sup>. 3.Letters addressed to contemporary physicians (مفاوضات كه بحكماء معاصر قلمى شده), on fol. 93<sup>b</sup>. 4.Letters addressed to Amîrs, Khâns, etc. ( بامراء عظام و خوانين الكرام), on fol. 116<sup>a</sup>. 5.Letters addressed to his father, brothers, and other relatives ( رقائمى كه بوالد بزرگوار و اخوان و اقارب قلمى شده), on fol. 129<sup>a</sup>; the last letters are all addressed to his brother Abû-alfaḍl. Another brother of his was Abû-alkhair. The five laṭîfas are preceded by Faiḍi’s preface to his diwân (see No. 1464 above), beginning here with the initial bait of the first ḳaṣîdah: يا ازلىّ الظّهور يا ابدىّ الخفا الخ . The three manṭûḳas and the khâtimah which, according to Faiḍi’s own statement, were to follow after the five laṭîfas, are wanting in this copy, just as in Rieu’s. Dated the 22nd of Shawwâl, in the fourth year of ‘Âlamgîr’s reign (=A.H. 1072, A.D. 1662, June 10). No. 1064, ff. 136, ll. 17; Nasta’lîḳ; size, 7<sup>7/8</sup> in. by 4<sup>1/4</sup> in.
DOI: 10.5281/zenodo.8339237
title: [IO Islamic 2486] رباعيّات سحابى

description: <strong>Rubâ’iyyât-Saḥâbî.</strong> <strong>This manuscript is now IO Islamic 1480 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2486 here with notations and hyperlinks].</strong> 1480 Rubâ’iyyât-Saḥâbî (رباعيّات سحابى). 654 rubâ’îs (besides some additional ones on the margin) by Maulânâ Saḥâbî of Astarâbâd (according to Taḳî Auḥadî of Shûshtar), usually called Najafî, because he had settled in Najaf, who died A.H. 1010 (A.D. 1601, 1602); comp. Bodleian Cat., No. 1063; Rieu ii. p. 672; A. Sprenger, Catal., pp. 42 (No. 587) and 552, 553; see also Haft Iḳlîm, No. 1171 (col. 467 in this Cat.); Khulâṣat-alafkâr, No. 130 (col. 307 in the Bodleian Cat.), and W. Pertsch, Berlin Cat., pp. 925 and 926 (where, by a mistake, the patron of the poet is called Shâh ‘Abbâs II, instead of ‘Abbâs I or the Great). In A. Sprenger, loc. cit., the collection of Saḥâbî’s rubâ’îs is styled حقائق معنوى . The quatrains are arranged alphabetically, and begin: معنى فعل است هر بد و نيكورا در پردۀ قول کرده پنهان اورا The initial rubâ’î of Sprenger’s and Rieu’s copies is not found in this selection. Bibliotheca Leydeniana. No. 2486, ff. 92-157<sup>a</sup>, five rubâ’îs in a page; Nasta’lîḳ; size, 8¼ in. by 5 in.
DOI: 10.5281/zenodo.8339236
title: [IO Islamic 2486] رباعيّات سحابى

description: <strong>Rubâ’iyyât-Saḥâbî.</strong> <strong>This manuscript is now IO Islamic 1480 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2486 here with notations and hyperlinks].</strong> 1480 Rubâ’iyyât-Saḥâbî (رباعيّات سحابى). 654 rubâ’îs (besides some additional ones on the margin) by Maulânâ Saḥâbî of Astarâbâd (according to Taḳî Auḥadî of Shûshtar), usually called Najafî, because he had settled in Najaf, who died A.H. 1010 (A.D. 1601, 1602); comp. Bodleian Cat., No. 1063; Rieu ii. p. 672; A. Sprenger, Catal., pp. 42 (No. 587) and 552, 553; see also Haft Iḳlîm, No. 1171 (col. 467 in this Cat.); Khulâṣat-alafkâr, No. 130 (col. 307 in the Bodleian Cat.), and W. Pertsch, Berlin Cat., pp. 925 and 926 (where, by a mistake, the patron of the poet is called Shâh ‘Abbâs II, instead of ‘Abbâs I or the Great). In A. Sprenger, loc. cit., the collection of Saḥâbî’s rubâ’îs is styled حقائق معنوى . The quatrains are arranged alphabetically, and begin: معنى فعل است هر بد و نيكورا در پردۀ قول کرده پنهان اورا The initial rubâ’î of Sprenger’s and Rieu’s copies is not found in this selection. Bibliotheca Leydeniana. No. 2486, ff. 92-157<sup>a</sup>, five rubâ’îs in a page; Nasta’lîḳ; size, 8¼ in. by 5 in.
DOI: 10.6084/m9.figshare.24128730
title: Untitled Item

description: The data is a qualiatative data and gathered by 10 semi-structured interviews.
DOI: 10.6084/m9.figshare.24128730.v1
title: Untitled Item

description: The data is a qualiatative data and gathered by 10 semi-structured interviews.
DOI: 10.6073/pasta/2c5dfc007f2b1f1247c85cc516f92770
title: Limnological data for 17 mountain lakes in Banff and Yoho National Parks (Canadian Rocky Mountains) from 2015 to 2022

description: From 2015 to 2022, mid-summer vertical profiles of temperature, chlorophyll a fluorescence, turbidity, and fDOM were collected in a set of 17 lakes in Banff and Yoho National Parks, Canada. These lakes are located across montane, sub-alpine and alpine ecoregions and they vary widely in elevation (1300-2423 m a.s.l.), surface area (1.5-116 ha) and maximum depth (2.4-39.2 m). Eight of the lakes receive surface and/or groundwater hydrologic inputs from glaciers within the catchment, and the other nine lakes are not glacially-fed. Vertical profiles were collected in each lake within one or two days of an index sampling date between late July and early August using an Exo2 vertical profiling sonde. Measurements were taken at 1 s intervals as the sonde was lowered slowly through the water column, and then averaged over 0.5 m depth intervals. In addition, attenuation rates were estimated for 305 nm, 320 nm, and 380 nm, and PAR (400-700 nm) as the slopes of log-linear regressions of irradiance vs. depth. Downwelling irradiance measured with a Biospherical Instruments underwater radiometer. Vertical Profile Data are contained in Can_Rocky_Mtn_Lakes_Profiles.csv. Attenuation rates are contained in Can_Rocky_Mtn_Lakes_Kd.csv. Information about study lakes is contained in Can_Rocky_Mtn_Lakes_Site_Information.csv.
DOI: 10.25345/c5sf2mn96
title: MassIVE MSV000092841 - Toxoplasma protein phosphatase PPKL Co-IP MS data
title: Toxoplasma protein phosphatase PPKL Co-IP MS data of the paper "The protein phosphatase PPKL is a key regulator of daughter parasite development in Toxoplasma gondii".
DOI: 10.6084/m9.figshare.23266559.v2
title: OnBody Shortcuts placements data

description: Репозиторий с прототипом функии и визуализированными данными: https://github.com/UlyanaTsi/Empirical-Evaluation-of-Spatial-Shortcuts-for-Launching-App-at-Augmented-Reality-Glasses <br>
DOI: 10.5281/zenodo.8339229
title: Mastcam Image Data (Sols 2303-3672)

description: Decorrelation stretch and context images for regions of interest.
DOI: 10.5281/zenodo.8339228
title: Mastcam Image Data (Sols 2303-3672)

description: Decorrelation stretch and context images for regions of interest.
DOI: 10.18120/gnd8-r216
title: test
DOI: 10.26207/hcjx-8w62
title: Data for "A global dataset of enteric methane mitigation experiments with lactating and non-lactating dairy cows conducted from 1963 to 2022"
DOI: 10.5281/zenodo.8339248
title: Data for "Gender and retention patterns among U.S. faculty"

description: This repository contains the data for the paper "Gender and retention patterns among U.S. faculty".
DOI: 10.5281/zenodo.8339247
title: Data for "Gender and retention patterns among U.S. faculty"

description: This repository contains the data for the paper "Gender and retention patterns among U.S. faculty".
DOI: 10.5281/zenodo.8339288
title: BigWig files for Han project

description: BigWig files for Han project
DOI: 10.5281/zenodo.8339287
title: BigWig files for Han project

description: BigWig files for Han project
DOI: 10.34992/pnqh-zs42
title: Fagradalsfjall Iceland Eruption - Mercury sampling campaigns 2021-2022
DOI: 10.5281/zenodo.8338557
title: Outputs of the Jupyter Notebook - Variational data assimilation with deep prior (CIRC23)

description: The dataset contains the outputs of the notebook "Variational data assimilation with deep prior (CIRC23)" published in The Environmental Data Science Book.
DOI: 10.5281/zenodo.8338586
title: Outputs of the Jupyter Notebook - Variational data assimilation with deep prior (CIRC23)

description: The repository contains the outputs of the notebook "Variational data assimilation with deep prior (CIRC23)" published in The Environmental Data Science Book.
DOI: 10.5281/zenodo.8339319
title: Outputs of the Jupyter Notebook - Variational data assimilation with deep prior (CIRC23)

description: The repository contains the outputs of the notebook "Variational data assimilation with deep prior (CIRC23)" published in The Environmental Data Science Book.
DOI: 10.5281/zenodo.8338556
title: Outputs of the Jupyter Notebook - Variational data assimilation with deep prior (CIRC23)

description: The repository contains the outputs of the notebook "Variational data assimilation with deep prior (CIRC23)" published in The Environmental Data Science Book.
DOI: 10.21233/0vk6-pv92
title: Four Mile Billabong pollen dataset

description: Raw data for the Four Mile Billabong pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/5qce-my61
title: Moon Point pollen dataset

description: Raw data for the Moon Point pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.25345/c5ns0m798
title: MassIVE MSV000092842 - Investigating the relationship between drone body size and heat response
title: We recorded the thorax widths of 90 drones and subjected them to heat shock or control treatments. We then investigated relationships between post-treatment abdomen protein expression and body size x treatment interactions.
DOI: 10.21233/c2fs-hz19
title: ODP820 pollen dataset

description: Raw data for the ODP820 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/th70-yv81
title: Old Lake Coomboo Depression pollen dataset

description: Raw data for the Old Lake Coomboo Depression pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/q34f-1006
title: Amatitlan pollen surface sample dataset

description: Raw data for the Amatitlan pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/hsc0-6404
title: Oshukovskoe macrocharcoal dataset

description: Raw data for the Oshukovskoe macrocharcoal dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/td0e-f871
title: Báb-tava pollen dataset

description: Raw data for the Báb-tava pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/x1d2-vg29
title: Taul dintre Brazi pollen dataset

description: Raw data for the Taul dintre Brazi pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/xb1k-4w74
title: Sandy Creek pollen dataset

description: Raw data for the Sandy Creek pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.26093/cds/vizier.18430091
title: Massive star cluster in LIRGs in GOALS.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Massive star cluster formation and destruction in Luminous Infrared Galaxies in GOALS.' (bibcode: 2017ApJ...843...91L)
DOI: 10.21233/ea4n-1a85
title: Taul dintre Brazi loss-on-ignition dataset

description: Raw data for the Taul dintre Brazi loss-on-ignition dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/4e00-dk20
title: Four Mile Billabong pollen dataset

description: Raw data for the Four Mile Billabong pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.34740/kaggle/dsv/6460567
title: Text_VPH
DOI: 10.5281/zenodo.8339329
title: eurycea_paludicola_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8339328
title: eurycea_paludicola_spades_01.fasta.gz

description: .
DOI: 10.5066/p940ry1p
title: Physiological Analysis of Eleutherodactylus Specimens in West-Central Puerto Rico, 2021-2022

description: Amphibians are vulnerable to extinction owing, partly, to altered physiological processes induced by projected global warming and drying. Understanding the mechanisms behind their responses is essential to formulate adaptation strategies for their conservation. Puerto Rico harbors 15 endemic Eleutherodactylus frogs considered vulnerable to extinction due to poor vagility and sensitivity to environmental variability. Herein are reported the effects of four temperature treatments (15, 20, 25, and 30 degrees Centigrade) on metabolic rates associated with specific dynamic action (SDA) and standard metabolic rates (SMR) of four representative species of Eleutherodactylus employing a respirometer. All species in either experiment increased their excretion of CO2 with increasing temperature. CO2 excretion rates were higher immediately post-ingestion, subsiding to low levels by the third day (72 hours). SMR excretion rates of E. juanariveroi and E. antillensis increased up to 20 degrees Centigrade and then curbed. Rates of E. coqui increased linearly, whereas rates of E. wightmanae increased markedly from 20 to 25 degrees Centigrade, perishing at 30 degrees Centigrade. E. antillensis, E. wightmanae and E. juanariveroi exhibited a change in metabolic rates between 20 degrees Centigrade and 25 degrees Centigrade, the same range where occupancy shifts from lower to higher probability for all species. Climate projections suggest that species will be exposed to 2-3 additional hours during evenings at ?25 degrees Centigrade below 300 m, and about 1 hour at 400-500 m. Species occurring in low elevations (?400 m) may have to compensate for the additional energy expenditure induced by increased exposure and adjust their evening time budget. A continuing warming trend could begin to infringe on habitats of high elevation specialists like E. wightmanae.
DOI: 10.6084/m9.figshare.3761562.v2706
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.21227/hgz1-v869
title: Rapid Drought Stress Detection in Plants Using Bioimpedance Measurements and Analysis

description: Smart farming is the targeted use of phenotyping for the rapid, continuous, and accurate assessment of plant health in the field. Bioimpedance monitoring can play a role in smart farming as a phenotyping method, which is now accessible thanks to recent efforts to commoditize and miniaturize electronics. Here, we demonstrate that bioimpedance measurements reflect the physiological changes in live plant tissue with induced alterations in their environmental conditions. When plants were exposed to -1.0 MPa polyethylene glycol, to simulate drought conditions, the extracellular resistance was observed to increase prior to the intercellular resistance, where the low frequency bioimpedance measurements increased by 25\% within one hour. Similar patterns were observed when drought stress was applied to the plants by water withholding, with a bioimpedance increase within a matter of a few hours. The bioimpedance measurements were also compared with leaf relative water content, imaging, and field transpirable soil water, which reinforced these findings. These preliminary results suggest that bioimpedance can function as a phenotyping tool for continuous and real time monitoring of plant stress to allow the development of strategies to prevent damage from environmental stresses such as drought.
DOI: 10.6084/m9.figshare.22320904
title: SPSS syntax

description: SPSS syntax
DOI: 10.6084/m9.figshare.22320898
title: Data for R scripts

description: The data here includes all the excel files storing factor scores and loading matrices across conditions in the study.