cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/tye
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm458

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr15:63025492-63026341 **Name:** mCF144 **Vista Enhancer ID:** mm458 **Nearest craniofacial gene or locus:** NOG **Enhancer expression:** positive **Tissues where active:** branchial arch, limbs, other **Comment on OPT files:** no clip file This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 3 movie (.avi) files: 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Coronal plane movie, Sagittal plane movie, Transverse plane movie * 3 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text file mCF144metadata.txt from the External Reference section .
DOI: 10.25550/v1t
title: microCT - Bone Tissue of a Ctgf-/- mouse at P0

description: Mouse ID: CP041 This dataset includes microCT scans of the skull of a Ctgf-/- mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v5j
title: microCT - Bone Tissue of K14-Cre;Fgfr2flfl mouse at P0

description: This dataset includes microCT scans of the skull of two K14-Cre; Fgfr2flfl mice at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v72
title: microCT - Bone Tissue of Tgfbr2flfl Control mouse at P0

description: Mouse ID: JI211 This dataset includes 1 microCT scan of the skull of a Tgfbr2fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v7e
title: microMRI images and video of skulls of unaffected wild type mice at E14.5

description: microMRI images of skulls of unaffected wild type mice at E14.5 The dataset contains 3-D images in niftii format for each of 10 wild type mice. This is an update of dataset FB00000112
DOI: 10.25550/vgr
title: microCT - Soft Tissue of Msx1 Mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of an Msx1 mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vhp
title: microCT - Soft Tissue of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: AS324 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vm4
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E18.5

description: Mouse ID: JI140 This dataset includes a microCT scans of the head tissue of a K14-Cre;Tgfbr2fl/fl mouse at stage E18.5. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vpa
title: microCT - Soft Tissue of a K14-Cre;Fgfr2fl/fl mouse at E16.5

description: Mouse ID: ZZ352 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vpe
title: microCT - Soft Tissue of a Wnt1-Cre; Tgfbr2fl/fl; Tgfb2+/- mouse at E18.5

description: Mouse ID: JI331 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2fl/fl; Tgfb2+/- mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vr0
title: microMRI images of skulls of unaffected mice at E14.5

description: microMRI images of skulls of unaffected wild type mice at E14.5. The dataset contains 3-D images in niftii format for each of 4 mice.
DOI: 10.25550/vsc
title: microCT - Soft Tissue of C57BL6J Mouse at P0

description: Mouse ID: JI235 This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.7910/dvn/xbguul/0jtl3g
title: Luo et al. (2019) data.tab

description: :unav
DOI: 10.7910/dvn/xbguul/jiwoew
title: Luo et al. (2019) code for replication.do

description: :unav
DOI: 10.25550/26sm
title: Transgenic mouse enhancer assay - mm636

description: We used ChIP-seq to identify non-coding regulatory elements (enhancers) active during craniofacial development. This assay is Tg(mm9_chr11:112874475-112876828::LacZ). Follow this [link](https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&experiment_id=636&organism_id=2) to see the associated data in the VISTA browser.
DOI: 10.25550/tj0
title: Developing 3D Craniofacial Morphometry Data and Tools to Transform Dysmorphology

description: Subjects enrolled include over 4500 individuals; &gt;3800 are patients with &gt;300 different genetic syndromes with manifestations of craniofacial dysmorphology, as well as &gt;600 apparently unaffected relatives. Enrolled subjects include males and females, with diverse age, racial, and ethnic composition. Available data include 3D morphometric facial scans (.ply format) and associated clinical and molecular genetic metadata. This is **restricted-access** human data. To gain access to these data, you must first go through the [process outlined here](/odocs/data-guidelines/).
DOI: 10.25550/tm8
title: Micro-CT images of adult mouse skulls, Collaborative Cross A/J x NZO

description: The dataset consists of a set of images for 2 mice with one parent from the A/J strain, and the other parent from the NZO strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tn8
title: microCT - Soft Tissue of a Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: JI249 This dataset includes microCT scans of the skull of a Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/ts0
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm402

description: See link to the data preparation protocols for this study in the Additional Information section . See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6:50771120-50773588 **Name:** mCF88 **Vista Enhancer ID:** mm402 **Nearest craniofacial gene or locus:** none **Enhancer expression:** positive **Tissues where active:** branchial arch, forebrain, hindbrain, midbrain, neural tube, other This data set includes the following: * 4 files in .tgz format. Each of these corresponds to one .avi file and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF88metadata.txt from the External Reference section
DOI: 10.25550/twy
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: JI248 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/ty6
title: microCT - Soft Tissue of an Fgfr2fl/fl control mouse at E17.5

description: Mouse ID: ZZ293 This dataset includes microCT scans of the skull of an Fgfr2fl/fl control mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v10
title: microCT - Bone Tissue of Smad4fl/+ mouse at P0

description: Mouse ID: DH114 This dataset includes microCT scans of the skull of a Smad4fl/+ mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v3c
title: microCT - Bone Tissue of Wnt1-Cre; Tgfbr2flfl Mouse at E18.5

description: Mouse ID: JI251 This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2flfl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v48
title: microCT - Bone Tissue of a Msx1-/- mouse at E17.5

description: Mouse ID: AH243 This dataset includes microCT scans of the skull of an Msx1-/- mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v52
title: microCT - Bone Tissue of C57BL6J mouse at E16.5

description: Mouse ID: JI205 This dataset includes a microCT scan of the skull of a C57BL6J mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v5w
title: microCT - Soft Tissue of Msx1 Control mouse at E18.5

description: Mouse ID: AH244 This dataset includes 1 microCT scan of the skull of a Msx1 control mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v7a
title: What miRNAs are expressed in the E13.5 mouse midfacial tissue?

description: Researching what miRNAs are expressed in the E13.5 mouse midfacial tissue. Methods: 5 dissected maxillas (1.2 mg w/w per maxilla; 3.2 ug of purified miRNA); 3 dissected FNP (4.5 mg w/w per FNP; 4.8 ug of purified miRNA); 9 dissected palatal shelves (0.8 mg w/w per palatal shelves; 2.6 ug of purified miRNA); miRNA extracted using the Norgen miRNA Purification Kit, miRNA libraries prepared by ligation of barcoded adapters on 5' ends of small-RNA sequences, adapter was ligated to the 3' ends; miRNA-seq Illumina HiSeq
DOI: 10.25550/vfj
title: microCT - Soft Tissue of a Tgfbr2fl/fl Control mouse at E13.5

description: Mouse ID: AS333 This dataset includes microCT scans of the skull of a Tgfbr2fl/fl Control mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vhm
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x WSB

description: The dataset consists of a set of images for 11 mice with one parent from the 129S1 strain, and the other from the WSB strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vvc
title: microCT - Bone Tissue of a Ctgf-/- mouse at P0

description: Mouse ID: CP042 This dataset includes microCT scans of the skull of a Ctgf-/- mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.17632/26ddcrmtt8.1
title: Data for: Coupled heat and mass transfer model of gas migration during well cementing through a hydrate layer in deep-water regions

description: Coupled heat and mass transfer model of gas migration during well cementing through a hydrate layer in deep-water regions
DOI: 10.25550/3the
title: Activity of human neural crest enhancer near BMPER in E11.5 transgenic mouse embryo - Tg(hg38_chr7:33486073-33487607::LacZ)

description: Tg(hg38_chr7:33486073-33487607::LacZ) human neural crest enhancer primarily exhibiting expression in the trigeminal ganglion and nerve. 2/8 embryos also express LacZ in the medial frontonasal prominence, periocular mesenchyme, branchial arches, forelimb buds, and somites. This enhancer has relatively low expression in the human frontonasal prominence, demonstrating a species-specific bias in P. troglodytes when these two species are compared.
DOI: 10.25550/tj2
title: microMRI images of skulls of Ctgftm1Kml/Ctgftm1Kml mice at E14.5

description: microMRI images of skulls of Ctgftm1Kml/Ctgftm1Kml mice at E14.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/tjp
title: Frontal suture, Fgfr2+/S252W (Apert syndrome mouse model), E16.5 and E18.5

description: RNA-Seq libraries are from laser capture microdissections of C57BL/6J Apert syndrome EIIA-Cre+;Fgfr2+/S252W (A) mice, at development stages TS24/E16.5 (6) and TS26/E18.5 (8), from the frontal suture (IF), with 5 biological replicates (1-5), of the suture mesenchyme (SM) and frontal bone osteogenic front (FR). “A8IF1SM”, for example, indicates Apert, E18.5, frontal suture, replicate 1, suture mesenchyme.
DOI: 10.25550/tm0
title: microCT - Bone Tissue of Wnt1-Cre;Tgfbr2fl/fl mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tmt
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x C57BL6

description: The dataset consists of a set of images for 19 mice with one parent from the 129S1 strain and the other parent from the C57BL/6 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tq6
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm416

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr14:24313049-24314033 **Name:** mCF102 **Vista Enhancer ID:** mm416 **Nearest craniofacial gene or locus:** ZFP503 This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF102metadata.txt from the External Reference section
DOI: 10.25550/tyg
title: Micro-CT images of adult mouse skulls, Collaborative Cross NZO x C57BL6

description: The dataset consists of a set of images for 13 mice with one parent from the NZO strain and the other parent from the C57BL6 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/v42
title: microCT - Soft Tissue of K14-Cre;Tgfbr2flfl mice at E17.5

description: This dataset includes microCT scans of the skulls of K14-Cre;Tgfbr2fl/fl mice at E17.5. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v88
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm693

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr10: 36203387-36205893 **Name:** mAN32 **Vista Enhancer ID:** mm693 **Nearest craniofacial gene or locus:** none **Enhancer expression:** positive **Tissues where active:** nose, forebrain, limb, midbrain **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/v8e
title: microCT - Soft Tissue of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E13.5

description: Mouse ID: AS336 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vb4
title: microCT - Bone Tissue of Wnt1-Cre;Tgbr2fl/fl;Tgfb2+ mouse at E18.5

description: Mouse ID: JI217 This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2fl/fl; Tgfb2+ mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vde
title: Craniofacial phenotype analysis

description: MicroCT images of E16.5, E18.5, and P0 controls for Wnt1-Cre;Tgfbr2fl/fl
DOI: 10.25550/vg6
title: Gene expression RNA-Seq - mouse E14.5 Wild Type Anterior Medial Palate

description: This data set contains BAM RNA-Seq data for the Anterior Medial region of the palatal shelves at the E14.5 time-point in the developing mouse. Wild-type CD-1 outbred mice were used in this experiment. For each different region: Anterior Medial Palate - From the anterior region of the palatal shelf (closer to the front of the face). Also closer to the center of the palatal shelves (closer to the Medial-Edge Epithelia). Posterior Medial Palate - From the posterior region of the palatal shelf (closer to the hind-brain). Also located closer to the center of the palatal shelves (closer to the MEE). Anterior Lateral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The lateral region located further from the MEE. Posterior Lateral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The lateral region located further from the MEE. Anterior Nasal Palate - From the anterior region of the palatal shelf (closer to the front of the face). The nasal half of the palate located closer to the nose. Posterior Nasal Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The nasal half of the palate located closer to the nose. Anterior Oral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The oral half of the palate located closer to the tongue. Posterior Oral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The oral half of the palate located closer to the tongue. There are 3 replicates for each region collected (four for the ant. nasal region). Regions were isolated using Laser Capture Microdissection with the Arcturus Veritas instrument, then RNA-purified and processed for RNA Seq. The RNA-Seq was performed using 50 bp single-end reads (at least 20 million reads). Sequencing was performed on the Illumina HiSeq 2500.
DOI: 10.25550/vn0
title: microCT - Bone Tissue of Tgfbr2flfl Control mouse at P0

description: This dataset includes 1 microCT scan of the skull of a Tgfbr2fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vp0
title: microCT - Bone Tissue of Smad4flfl Control mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Smad4flfl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vw8
title: microCT - Bone Tissue of Tgfbr2 Control Mouse at E16.5

description: Mouse ID: JI193 This dataset includes microCT scans of the skull of a Tgfbr2 Control Mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vwe
title: microCT - Soft Tissue of Myf5-Cre;Smad4flfl mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Myf5-Cre; Smad4fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vx2
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x 129S1

description: The dataset consists of a set of images for 20 mice with one parent from the NOD strain, and the other from the 129S1 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.17632/c724r4rbdd.1
title: Data for: Pattern of Complementary and Alternative Medicine (CAM) Use Among Different Groups of Patients with Chronic Kidney Disease (CKD)

description: Data uploaded are the SPSS output for chi-square tests and binary logistic regression for the predictors of CAM use among different group of CKD patients
DOI: 10.25550/tkr
title: microCT - Soft Tissue of a Msx1+/+ Control mouse at E16.5

description: Mouse ID: AH254 This dataset includes microCT scans of the skull of a Msx1+/+ Control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format