DOI: 10.6084/m9.figshare.3146698.v6
title: [Data Record 6]: DEEs and DEGs

description: DEG CA1 N-C 1H - # Description: Differentially Expressed Genes results for N-C comparison in CA1 1h. This list contains all genes with more than 5 reads in all conditions. The 'ensemblID' column shows the ENSEMBL gene ID. Column 'gene_name' contains the gene symbol ID. Column 'description' contains a brief description of the gene. Columns 'chromosome', 'start', 'stop' and 'strand' contain the information about the gene location in the mm10 genome assembly, respectively, chromosome, start position, stop position and strand information (1 for positive strand and -1 for negative strand). 'biotype' column refers to the gene type. 'baseMean' column shows the mean expression of the gene in all the samples. The 'log2FoldChange' column shows the ratio between treatment and control sample expression in log2 scale. The 'pvalue' column shows the raw p-value of DESeq2 analysis and column 'padj' shows the adjusted p-value by FDR multiple correction. <br>DEG CA1 N-CS 1H - # Description: Differentially Expressed Genes results for N-CS comparison in CA1 1h. This list contains all genes with more than 5 reads in all conditions. The 'ensemblID' column shows the ENSEMBL gene ID. Column 'gene_name' contains the gene symbol ID. Column 'description' contains a brief description of the gene. Columns 'chromosome', 'start', 'stop' and 'strand' contain the information about the gene location in the mm10 genome assembly, respectively, chromosome, start position, stop position and strand information (1 for positive strand and -1 for negative strand). 'biotype' column refers to the gene type. 'baseMean' column shows the mean expression of the gene in all the samples. The 'log2FoldChange' column shows the ratio between treatment and control sample expression in log2 scale. The 'pvalue' column shows the raw p-value of DESeq2 analysis and column 'padj' shows the adjusted p-value by FDR multiple correction. <br>DEG ACC N-C 4W - # Description: Differentially Expressed Genes results for N-C comparison in ACC 4w. This list contains all genes with more than 5 reads in all conditions. The 'ensemblID' column shows the ENSEMBL gene ID. Column 'gene_name' contains the gene symbol ID. Column 'description' contains a brief description of the gene. Columns 'chromosome', 'start', 'stop' and 'strand' contain the information about the gene location in the mm10 genome assembly, respectively, chromosome, start position, stop position and strand information (1 for positive strand and -1 for negative strand). 'biotype' column refers to the gene type. 'baseMean' column shows the mean expression of the gene in all the samples. The 'log2FoldChange' column shows the ratio between treatment and control sample expression in log2 scale. The 'pvalue' column shows the raw p-value of DESeq2 analysis and column 'padj' shows the adjusted p-value by FDR multiple correction. <br>DEG ACC N-CS 4W - # Description: Differentially Expressed Genes results for N-CS comparison in ACC 4w. This list contains all genes with more than 5 reads in all conditions. The 'ensemblID' column shows the ENSEMBL gene ID. Column 'gene_name' contains the gene symbol ID. Column 'description' contains a brief description of the gene. Columns 'chromosome', 'start', 'stop' and 'strand' contain the information about the gene location in the mm10 genome assembly, respectively, chromosome, start position, stop position and strand information (1 for positive strand and -1 for negative strand). 'biotype' column refers to the gene type. 'baseMean' column shows the mean expression of the gene in all the samples. The 'log2FoldChange' column shows the ratio between treatment and control sample expression in log2 scale. The 'pvalue' column shows the raw p-value of DESeq2 analysis and column 'padj' shows the adjusted p-value by FDR multiple correction. <br>DEE CA1 N-C 1H - # Description: Differentially Expressed Exons results for N-C comparison in CA1 1h. Column 'ensemblID' contains one or more ENSEMBL gene IDs (for exons belonging to multiple gene isoforms). Column 'exonID' contains an internal exon ID, composed by an 'E' letter and the exon number. Column ' pvalue' contains the raw p-value calculated by DEXseq. Column ' padj' contains the adjusted p-value by FDR multiple correction. The 'meanBase' column shows the mean expression of the exon in all the samples. The 'log2foldChange' column shows the difference of expression between treatment and control sample in log2 scale. Transcripts with values of log2 fold-change and raw and adjusted p-values equal to NA are those filtered by independent filtering in DEXSeq. <br>DEE CA1 N-CS 1H - # Description: Differentially Expressed Exons results for N-CS comparison in CA1 1h. Column 'ensemblID' contains one or more ENSEMBL gene IDs (for exons belonging to multiple gene isoforms). Column 'exonID' contains an internal exon ID, composed by an 'E' letter and the exon number. Column ' pvalue' contains the raw p-value calculated by DEXseq. Column ' padj' contains the adjusted p-value by FDR multiple correction. The 'meanBase' column shows the mean expression of the exon in all the samples. The 'log2foldChange' column shows the difference of expression between treatment and control sample in log2 scale. Transcripts with values of log2 fold-change and raw and adjusted p-values equal to NA are those filtered by independent filtering in DEXSeq. <br>DEE ACC N-C 4W - # Description: Differentially Expressed Exons results for N-C comparison in ACC 4w. Column 'ensemblID' contains one or more ENSEMBL gene IDs (for exons belonging to multiple gene isoforms). Column 'exonID' contains an internal exon ID, composed by an 'E' letter and the exon number. Column ' pvalue' contains the raw p-value calculated by DEXseq. Column ' padj' contains the adjusted p-value by FDR multiple correction. The 'meanBase' column shows the mean expression of the exon in all the samples. The 'log2foldChange' column shows the difference of expression between treatment and control sample in log2 scale. Transcripts with values of log2 fold-change and raw and adjusted p-values equal to NA are those filtered by independent filtering in DEXSeq. <br>DEE ACC N-CS 4W - # Description: Differentially Expressed Exons results for N-CS comparison in ACC 4w. Column 'ensemblID' contains one or more ENSEMBL gene IDs (for exons belonging to multiple gene isoforms). Column 'exonID' contains an internal exon ID, composed by an 'E' letter and the exon number. Column ' pvalue' contains the raw p-value calculated by DEXseq. Column ' padj' contains the adjusted p-value by FDR multiple correction. The 'meanBase' column shows the mean expression of the exon in all the samples. The 'log2foldChange' column shows the difference of expression between treatment and control sample in log2 scale. Transcripts with values of log2 fold-change and raw and adjusted p-values equal to NA are those filtered by independent filtering in DEXSeq.