cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/scw4zjsrbv
title: NHEJ-mediated repair of CRISPR-Cas9-induced DNA breaks efficiently corrects mutations in HSPCs from patients with Fanconi Anemia. Roman-Rodriguez et al

description: The raw data of the main figures can be obtained here.
DOI: 10.6084/m9.figshare.19619898.v1
title: PLOS_ONE_raw_data_images

description: folder contains data-set and microscopic images used in manuscript PONE-D-22-00134 submitted to PLOS ONE journal
DOI: 10.17632/k6rkkrzryk
title: Data for: The morphology- vocabulary- reading mechanism and its effect on students’ academic achievement in an English L2 context

description: SPSS file with raw data regarding students' morphological awareness, reading comprehension and vocabulary knowledge.
DOI: 10.6084/m9.figshare.20498970.v2
title: Disease database

description: Disease database
DOI: 10.17632/m5zmrr564v
title: ViCoW: A Dataset for Colorization and Restoration of Vietnam War Imagery

description: ViCoW is a dataset of 1,896 high-resolution image pairs extracted from four historically significant Vietnamese films set during the Vietnam War era. Each pair includes a color frame and its grayscale version (converted using the ITU-R BT.601 formula), supporting research in AI-based image restoration and colorization.

Many photos and film scenes from this period exist only in black and white, making them feel distant to modern audiences. ViCoW helps bridge this gap by enabling the development of models that bring historical visuals to life in color. Frames were extracted every 3 seconds from well-preserved footage and manually curated for diversity and cultural relevance.

ViCoW contributes to both technical research and cultural preservation, offering a valuable resource for training and evaluating deep learning models in digital heritage, education, and historical storytelling.
DOI: 10.17632/vgx7jx4w7p
title: Soil quality following 12 years of corn monocultures and short rotations

description: This data set includes soil properties collected from an experimental setup of corn (Zea mays L.) monocultures and short rotations with soybeans [Glycine max (L.) Merr.] following 12 years of agronomic management at six locations around the state of Illinois, U.S.A. Our goal was to compare soil properties under long-term use of the most common crop rotations in the state and to identify soil quality indicators. Crop rotations of continuous corn (CCC), corn-soybean (CS), and corn-corn-soybean (CCS) were arranged in a randomized complete block design (RCBD), with three or four replications at each of six locations, with all phases present each year. Soil sampling was conducted in the fall of 2014 at at all sites following crop harvest. This project was funded by the Illinois Nutrient Research and Education Council (IL-NREC), Award No. 2014-02379 "Measuring Soil Quality Changes in Corn and Soybean Rotations".
DOI: 10.17632/vwdbw6w678
title: Potential effects of fertilization strategies on greenhouse gas emissions from bamboo forest soils

description: This is the data on Potential effects of fertilization strategies on greenhouse gas emissions from bamboo forest soils, mainly used as raw data for meta-analysis.
DOI: 10.17632/w9ndx3v3pp
title: Data for: Two­-phase modelling of liquid-­gas flow of dispersed and segregated flows

description: The following data were attached: -Processed data -Table and graphics -Experimental and numerical data -Cases configured to simulate each of the experiments in OpenFOAM -The modified twoPhaseEulerFoam code. One of the modifications made is the addition of the Grace Dredge model
DOI: 10.17632/s72t6rdxjf
title: Thermal tolerance responses of the two-spotted stink bug, Bathycoelia distincta (Hemiptera: Pentatomidae), vary with life stage and the sex of adults

description: Critical thermal limits
DOI: 10.17632/9v6pwjzxg6
title: Comparison of Aerosol Optical Depth from MODIS Product Collection 6.1 and AERONET in the Western United States

description: The files attached here include the datasets and codes used for assessing the number of MODIS AOD retrievals, and the relationship between MODIS AOD and AERONET AOD across the western United States. The raw MODIS Level 2 AOD data products (Collection 6.1) are NASA's data and can be acquired through the link [https://ladsweb.modaps.eosdis.nasa.gov]. The ground-based aerosol products are AERONET program's data and can be obtained through the link [https://aeronet.gsfc.nasa.gov]. The explanation for the datasets and codes is given below: 1. AERONET_Data_Excel_File_Format: the aerosol data properties (AOD and Angstrom exponent) for 23 AERONET sites from the western United States. 2. AERONET_Data_Mat_File_Format: the processed AOD at 550 nm in Mat file format for 23 sites. 3. MODIS_Aqua_and_Terra_Data_List: this dataset includes the list of MODIS Aerosol Level 2 data from Aqua and Terra satellites used in this study. 4. Code_for_Interpolating_MODIS_AOD_into_Regular_Grids: this is a code used to interpolate the MODIS DB AOD recordings for each day into regular grids. 5. Code_for_Counting_the_Number_of_AOD_Retrieval: this is a code used to count the number of MODIS DB AOD retrievals. 6. Code_for_Generating_Figures_for_Number_of_Seasonal_and_Monthly_AOD_Retrieval: the code used to map the seasonal and monthly number of AOD retrievals. 7. Code_for_Extracting_Time_Series_of_AOD: this package includes the codes for extracting the time series of AOD from the Deep Blue and Dark Target algorithms. 8. Code_for_Generating_Correlation_Figures: this package includes the codes used to plot the correlation between MODIS (Aqua and Terra) AOD and AERONET AOD for the 23 sites. 9. Code_for_Spatial_Distribution_of_Correlation_beween_MODIS_and_AERONET: this is code used to map the spatial variability of correlation between MODIS and AERONET AOD for the 23 sites. 10. Code_for_Processing_Excel_File: this code is used to process the aerosol data properties from AERONET sites.
DOI: 10.6084/m9.figshare.20097293.v1
title: Dataset on Preservice Teachers’ Technology Integration during Teaching Practice: An Extended Theory of Planned Behavior

description: This data refers to the factors affecting technology integration during teaching practice among preservice teachers: Indonesian contexts.
DOI: 10.6084/m9.figshare.5472964.v2
title: SI 3. Executable file for parsimony analyses using PAUP (Figure 3) Worthy et al. galloanseres from The evolution of giant flightless birds and novel phylogenetic relationships for extinct fowl (Aves, Galloanseres).

description: The executable file for Parsimony analyses using PAUP for the analysis shown in Figure 3.
DOI: 10.17632/f4py97mdy4
title: [Dataset and R scripts] Shaping pollinator diversity through coffee agroforestry management: A meta-analytical approach

description: Dataset and R scripts supporting the statistical analyses of the Review Article "Shaping pollinator diversity through coffee agroforestry management: A meta-analytical approach" by Diego Centeno-Alvarado, Ariadna Valentina Lopes and Xavier Arnan in Insect Conservation and Diversity (https://doi.org/10.1111/icad.12755).
DOI: 10.6084/m9.figshare.28731020.v1
title: OKL-proteomic-analysis.xlsx

description: Proteomic analysis of two Orthokeratology lenses worn by a healthy 30 year old male overnight.
DOI: 10.6084/m9.figshare.24975375.v1
title: Supplementary Material for: Efﬁcacy and safety of cold snare polypectomy versus cold endoscopic mucosal resection for resecting 3–10 mm colorectal polyps: Systematic review and meta-analysis of randomized controlled trials

description: Abstract
Introduction The safety and efficacy of cold snare polypectomy (CSP) compared to those of cold endoscopic mucosal resection (CEMR) have been reported. This meta-analysis compared the efficacy and safety of CEMR and CSP.
Methods PubMed, EMBASE, Web of Science, and Cochrane Library databases were systematically searched to identify randomized controlled trials comparing the efficacy and safety of CEMR and CSP in removing 3–10 mm polyps. The outcomes assessed included complete resection rate, intraoperative bleeding rate, delayed bleeding rate, perforation, and polyp removal time. The results are reported as risk ratios (RR) and 95% confidence intervals (CI) derived from a Mantel–Haenszel random effects model.
Results Seven studies comprising 1,911 polyps were included in the analysis. The complete resection rate of CEMR was comparable to that of CSP (RR: 1.01, 95% CI: 0.99–1.04, P = 0.32). Comparable results were also demonstrated for intraoperative bleeding rate (polyp-based analysis: RR: 1.22, 95% CI: 0.33–4.43, P = 0.77), delayed bleeding rate (polyp-based analysis: RR: 1.34, 95% CI: 0.44–4.15, P = 0.61), and polyp removal time (mean difference: 28.31 s, 95% CI: -21.40~78.02, P=0.26). No studies reported cases of perforation.
Conclusion CEMR has comparable efficacy and safety to CSP in removing 3–10 mm polyps. Further randomized controlled trials with long-term follow-up are warranted to compare and validate efficacy.
DOI: 10.17632/xtww8jmgwr
title: A model for one-dimensional consolidation of clayey soils with non-linear viscosity

description: In this repository files are stored referring to an algorithm developed to calculate the one-dimensional consolidation of clayey soils, based on a model where creep is attributed to the non-linear viscous behavior of this type of soil.
DOI: 10.6084/m9.figshare.17816324.v1
title: Supplementary Material for: Novel Cranial Imaging Findings and a Splice-Site Variant in a Patient with Tyrosinemia Type III, and a Summary of Published Cases

description: Tyrosinemia type III is an extremely rare autosomal recessive disease, with only 19 patients yet reported. It is caused by a deficiency of the 4-hydroxyphenylpyruvate dioxygenase enzyme, resulting from biallelic mutations in the <i>HPD</i> gene. Although the clinical spectrum of the disease is not fully known, most patients present with neurodevelopmental symptoms. We report on a 20-month-old patient who was investigated due to developmental delay and dysmorphic features. The girl had a novel splice-site mutation in the <i>HPD</i> gene and ventriculomegaly in cranial imaging, which was not previously associated with tyrosinemia type III. Our patient had mild subjective improvement in social skills and language development after dietary therapy was started and her tyrosine levels decreased. We also summarize clinical, biochemical, and genetic findings of previously published patients with biallelic <i>HPD</i> mutations.
DOI: 10.6084/m9.figshare.28350179.v5
title: xdm_R_import_and_manipulate_data.R

description: This file is an R code designed to guide the user through data import and manipulation, with examples of data operations and visualizations, a theoretical example of biomass calculation using species wood density means, and an example of recalculation of the basic wood density.
DOI: 10.17632/txjxfppp3w
title: Images for underwater 3D reconstruction of Posidonia seagrass transplantation site 

description: The photographic data, which are the first step for data processing, were acquired with a low-cost action camera (GoPro Hero 9) capable of shooting high quality (20 Mpix images) photos with a specific time-lapse function. To perform the acquisition over a large area (3200 m2) the camera was mounted on a Diver Propulsion Vehicle (DPV) which allowed the SCUBA diver to map the entire area in only 1h and 10’. Consecutive (2 seconds interval) photos were acquired in raw format to allow further manual editing aimed at improving the result via colour grading and correction. Subsequently, each image was processed in a photogrammetric software (Agisoft Metashape) based on Structure from Motion (SfM) processing algorithms to generate 2D raster outputs (orthophoto mosaics and Digital Elevation Models, DEM),3D dense point clouds and 3D triangular mesh with texture. Finally, the open-source software Blender 2.93 was used to render the 3D scene to create a realistic view of the transplanted area by adding water effects and Posidonia leaves that otherwise cannot be well reproduced by only SfM data.
DOI: 10.5281/zenodo.15313981
title: 38 Glass Models Generated Using the MACE Potential in VASP Format

description: A machine-learning interatomic potential, MACE, was employed to construct structural models of 38 high-refractive glasses.

Pretrained foundation models, MACE-MP-L0 and L2, were utilized.

The glass models were constructed using a melt-quench simulation, involving melting at 2000 K for 500 ps, followed by a cooling simulation at a rate of 2 K/ps down to 300 K. The models were further equilibrated at 300 K for 500 ps. All simulations were performed using a canonical (NVT) ensemble.

The model volume was set to be consistent with the experimental density or the density estimated by GlassNet when experimental data was unavailable.

All MD simulations were performed using the LAMMPS package. The atomic motions were integrated with a 1-fs time step, and the temperature was controlled by a Nosé-Hoover thermostat.

DFT calculation results based on these glass models will be published in Computational Materials Science under the title "Leveraging LLMs to Identify Patent-Free Glass Materials".
DOI: 10.5281/zenodo.15313982
title: 38 Glass Models Generated Using the MACE Potential in VASP Format

description: A machine-learning interatomic potential, MACE, was employed to construct structural models of 38 high-refractive glasses.

Pretrained foundation models, MACE-MP-L0 and L2, were utilized.

The glass models were constructed using a melt-quench simulation, involving melting at 2000 K for 500 ps, followed by a cooling simulation at a rate of 2 K/ps down to 300 K. The models were further equilibrated at 300 K for 500 ps. All simulations were performed using a canonical (NVT) ensemble.

The model volume was set to be consistent with the experimental density or the density estimated by GlassNet when experimental data was unavailable.

All MD simulations were performed using the LAMMPS package. The atomic motions were integrated with a 1-fs time step, and the temperature was controlled by a Nosé-Hoover thermostat.

DFT calculation results based on these glass models will be published in Computational Materials Science under the title "Leveraging LLMs to Identify Patent-Free Glass Materials".
DOI: 10.15468/dl.bq8479
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Bibio marci (Linnaeus, 1758)"
 ]
}

 The dataset includes 1002 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009243-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4zfm69tpmx
title: Use of kodo millet and S.tenerrimum seaweed Powder in functional Chicken Nuggets:- shelf life study

description: The data is a complete set of information collected during the Ph.D., research work on physico-chemical, microbial, sensory, mineral, DPPH, colour, TPA and product characteristics of kodo millet and Sargassum tenerrimum seaweed incorporated chicken nuggets, packed under aerobic and vacuum packaging and stored in chiller at 4°C until spoilage.
DOI: 10.17632/s294p9sf9r
title: MALDI-TOF normalized average mass spectra of Escherichia coli treated by essential oil components, chlorine, proxide and tetracyckline

description: This dataset contains normalized spectra of Escherichia coli. The E. coli culture was treated with chemical agents derived from essential oils and subsequently measured by the MALDI-TOF at 30, 60, 90 and 120 minutes after treatment. Methods are described in the article. Exported spectra are in TXT files (m/z and intensity) for processing in other software (ex. mMass).
DOI: 10.17632/bf379xwcx3
title: Raw Lemon Leaf Image Dataset for Disease Detection: Canker and Healthy Classification Under Diverse Conditions

description: This dataset consists of high-resolution images of lemon leaves categorized into two classes: ''Canker'' (580 images of diseased leaves) and ''Healthy'' (369 images of healthy leaves). The images were captured in diverse environmental conditions, including varying lighting, angles, and leaf orientations, to ensure the dataset’s robustness for real-world applications. The dataset aims to support research in automated lemon leaf disease detection, particularly for canker, using machine learning and deep learning models. While it is unannotated, future versions will provide labels and bounding boxes for object detection tasks. Researchers can use this dataset for image classification, disease localization, and to explore strategies for addressing class imbalance, such as data augmentation. This collection serves as a valuable resource for developing and testing models for plant disease detection in real-world conditions.
DOI: 10.17632/k34hgzgz6h
title: Energy Economics Data

description: Data for Energy Economics paper titled "Climate Change, Energy Security and Agriculture: Evaluating Ecosystem Services, Renewable Energy Integration and Socioeconomic Impacts through a Global SWOT Analysis".
DOI: 10.17632/wrrc55c44f
title: Data for: Zircon constraints on granite provenance in the northern North China Craton

description: These are supplementary datasets for article ‘Zircon constraints on granite provenance in the northern North China Craton’
DOI: 10.17632/7fppp3wcyp
title: GREEN BANKING PRACTICES IMPACT THE BANKS ENVIRONMENTAL PERFORMANCE

description: HOW DO GREEN BANKING PRACTICES IMPACT THE BANKS ENVIRONMENTAL PERFORMANCE? A CASE STUDY IN VIETNAM
DOI: 10.17632/fpmnncmg84
title: ERWIAM dataset

description: Annotated image dataset of Fire blight symptoms for object detection in orchards.

Monitoring plant diseases in tree nurseries, breeding farms and orchards is essential for maintaining plant health. One of the most dangerous diseases in fruit growing is fire blight (Erwinia amylovora), as it can spread epidemically and cause enormous economic damage. In this context, a digital disease monitoring system for fire blight based on RGB images was developed for orchards. Data was collected on a total of nine dates in 2021, 2022 and 2023 under different weather conditions and with different cameras. The RGB images were taken of different apple genotypes after artificial inoculation with Erwinia amylovora, including varieties, wild species and progeny from breeding. The presented ERWIAM dataset contains manually labelled RGB images with a size of 1280 x 1280 pixels of fire blight infected shoots, flowers and leaves at different stages of development as well as background images without symptoms. In addition, symptoms of other plant diseases were recorded and integrated into the ERWIAM dataset as a separate class. The dataset contains a total of 1,611 annotated images and 87 background images. This dataset can be used as a resource for researchers and developers working on digital plant disease monitoring systems.
DOI: 10.6084/m9.figshare.15052299.v2
title: Climate warming promotes pesticide resistance through expanding overwintering range of a global pest

description: Data associated with “Climate warming promotes pesticide resistance through expanding overwintering range of a global pest” published in <i>Nature Communications.</i><br><br>Data have been uploaded in an excel file. First sheet includes cold survival data in laboratory test, the second sheet includes the cold survival data in field test, and the third sheet includes the pesticide resistance data for meta-analysis.
DOI: 10.17632/32zgm48rhc
title: ACAME Data

description: Data compiled from the IPUMS USA database, Bureau of Labor Statistics, Department of Human and Health Services, and Kaiser Family Foundation. Data is in stata format and spans 2009 to 2023.
DOI: 10.6084/m9.figshare.25626990.v1
title: Source data files--pairwise temporal coupling in collective motion

description: Data of the plots in the paper:For line plots there are two vectors, x and y. x is the top row, and y is the bottom.For figures with multiple line plots, there is a third row of NaNs dividing between the lines.For heatmaps the data are in a matrix (or 3D array in case of multiple heatmaps).
DOI: 10.6084/m9.figshare.25782840.v1
title: Research data for "Technology Impact on Law Enforcement: From More Dialogue to Learning Limitations"Research data for "Technology Impact on Law Enforcement: From More Dialogue to Learning Limitations"Research data for "Exploring novel frontiers in online privacy ethics"

description: This data was used for the "Exploring novel frontiers in online privacy ethics" paper.
DOI: 10.6084/m9.figshare.27132552.v1
title: PPG signals in .CSV files

description: This information is related to the project "PPG-Based Cholesterol Assessment," which showcases different PPG signals along with the cholesterol levels of the subjects. The purpose is to validate techniques or tools for estimating total cholesterol levels in the blood using the PPG signal.
DOI: 10.6084/m9.figshare.5077843.v1
title: Additional files for: Genome size in North American fireflies: Substantial variation likely driven by neutral processes

description: Three supplementary data files for: <br>Sarah Sander Lower, J. Spencer Johnston, Kathrin Stanger-Hall, Carl E. Hjelmen, Shawn J. Hanrahan, Katharine Korunes, David Hall; Genome size in North American fireflies: Substantial variation likely driven by neutral processes. Genome Biol Evol 2017 evx097. doi: 10.1093/gbe/evx097 <br>Contents: <br>1) Phylogeny used in PGLS analysis (newick format) <br>2) Traits used in PGLS analysis (excel spreadsheet, key to column names on 2nd sheet) <br>3) RepeatExplorer output for (a) entire dataset and (b) uniform 0.01x subsampled dataset (.zip file)
DOI: 10.17632/5mcb9pk3yj
title: Dataset for "A unique chaperoning mechanism in Class A JDPs recognizes and stabilizes mutant p53" by Zoltsman G. et al.

description: Raw data for "A unique chaperoning mechanism in Class A JDPs recognizes and stabilizes mutant p53" manuscript by Zoltsman G. et al.
DOI: 10.17632/byfgc9ycg8
title: Data for: Synthetic Aperture Radar and Optical Satellite Data for Estimating the Biomass of Corn

description: The measured dry and wet biomass, measured soil moisture, satellite observations including HH and HV backscatters and incidence angles are reported for all the 66 points (including calibration and validation points) in a table. This table was sorted such that the first 23 points are the calibration points and the rest of the points were used as the validation points.
DOI: 10.17632/7f6yxz2d4c
title: Risk factors and outcomes of acute kidney injury in South African critically ill adults: A prospective cohort study.

description: Raw clean data used for analysis
DOI: 10.17632/scsgf27ywh
title: Data for "Calf fitness associates with early embryo and recipient metabolomes, and with calf epigenetic marks"

description: Metadata used, including metabolites identified in embryo culture medium and recipient plasma, along with calf parameters, as well as gene expression and methylation results in calf lymphocytes obtained after the first colostrum intake. This data were used in the study "Calf fitness associates with early embryo and recipient metabolomes, and with calf epigenetic marks".