cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.27ejsf
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocarpus milanjianus"
 ]
}

 The dataset includes 1024 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024456-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30104062.v3
title: Auxiliary and validation data for SAGEA-fluid

description: Auxiliary and validation data for Project SAGEA-fluid at https://github.com/NCSGgroup/SAGEfA-fluid. Users can successfully run the demos provided by SAGEA-fluid by unzipping these data in the root directory.
DOI: 10.23729/fd-f9dc7d2c-0465-3991-961f-56128ee518d0
title: SQuaD: The Software Quality Dataset

description: Software quality research increasingly relies on large-scale datasets that measure both the product and process aspects of software systems. However, existing resources often focus on limited dimensions, such as code smells, technical debt, or refactoring activity, thereby restricting comprehensive analyses across time and quality dimensions. To address this gap, we present the Software Quality Dataset (SQuaD), a multi-dimensional, time-aware collection of software quality metrics extracted from 450 mature open-source projects across diverse ecosystems, including Apache, Mozilla, FFmpeg, and the Linux kernel. By integrating nine state-of-the-art static analysis tools, i.e., SonarQube, CodeScene, PMD, Understand, CK, JaSoMe, RefactoringMiner, RefactoringMiner++, and PyRef, our dataset unifies over 700 unique metrics at method, class, file, and project levels. Covering a total of 63,586 analyzed project releases, SQuaD also provides version control and issue-tracking histories, software vulnerability data (CVE/CWE), and process metrics proven to enhance Just-In-Time (JIT) defect prediction. The SQuaD enables empirical research on maintainability, technical debt, software evolution, and quality assessment at unprecedented scale. We also outline emerging research directions, including automated dataset updates and cross-project quality modeling to support the continuous evolution of software analytics.

Note: This Upload Covers the MongoDB data. The tables are compressed with Z-Standard (zstd). For more details, please refer to the main Zenodo upload (https://doi.org/10.5281/zenodo.17566690)
Dataset Size: ~95.71GB
DOI: 10.15468/dl.86wrb9
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocarpus milanjianus"
 ]
}

 The dataset includes 1024 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024457-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30104062.v4
title: Auxiliary and validation data for SAGEA-fluid

description: Auxiliary and validation data for Project SAGEA-fluid at https://github.com/NCSGgroup/SAGEfA-fluid. Users can successfully run the demos provided by SAGEA-fluid by unzipping these data in the root directory.
DOI: 10.15468/dl.xhyvbf
title: Occurrence Download

description: A dataset containing 4049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-31.10837 -39.79821,58.73156 -39.79821,58.73156 33.89522,-31.10837 33.89522,-31.10837 -39.79821))",
 "HasGeospatialIssue is false",
 "TaxonKey is Podocarpus"
 ]
}

 The dataset includes 4049 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024459-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rzd5j
title: Occurrence Download

description: A dataset containing 2506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-31.10837 -39.79821,58.73156 -39.79821,58.73156 33.89522,-31.10837 33.89522,-31.10837 -39.79821))",
 "HasGeospatialIssue is false",
 "TaxonKey is Afrocarpus"
 ]
}

 The dataset includes 2506 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024460-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yp7qyv
title: Occurrence Download

description: A dataset listing the 449032 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset's 449032 records were derived from 4856 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024453-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmqyxg
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centropus rectunguis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 523 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086125-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrr6g9
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.24_1",
 "TaxonKey is Trachemys scripta elegans"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086126-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bx9wa6
title: Occurrence Download

description: A dataset containing 4116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "OccurrenceStatus is Present",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 4116 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086127-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgvza9
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Abeliophyllum Nakai"
 ]
}

 The dataset includes 92 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010485-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btkk27
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Plectroglyphidodon fasciolatus"
 ]
}

 The dataset includes 138 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002237-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e99775
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euxestonotus error",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002238-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18779688
title: FIShBOT Archive 2026-02-26

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.18779687
title: FIShBOT Archive 2026-02-26

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.15468/dl.dpas7h
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Loxopholis osvaldoi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 126 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002239-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avd2ja
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Plectroglyphidodon gascoynei"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002240-260225131425191/datasets/export for details.
DOI: 10.15468/dl.3a6652
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylocoris flavipes",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002241-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18779062
title: Variables: climate, soil, altitude, solar, wind speed, vapor pressure

description: This is raster dataset and sqlite dataset for make prediction of species distribution modelling
DOI: 10.7939/r3-jyma-8492
title: Text Analysis Portal for Research (TAPoR) Archive

description: This is an Archive of the Text Analysis Portal for Research (TAPoR) website located at http://tapor.ca. TAPoR is a gateway to the tools used in sophisticated text analysis and retrieval. The archive contains: -A readme text document. -An SQL dump file of the database that contains the list of tools and information about the tools in different tables. -A folder containing Portable Document Format(PDF) documents of snapshots of the TAPoR user interface. -A folder that contains XML files of the data from the database's tables. -A text document that presents the design of the tables in the database. -An API documentation document
DOI: 10.7939/r3-tnha-4924
title: Text Analysis Portal for Research (TAPoR) Archive

description: This is an Archive of the Text Analysis Portal for Research (TAPoR) website located at http://tapor.ca. TAPoR is a gateway to the tools used in sophisticated text analysis and retrieval. The archive contains: -A readme text document. -An SQL dump file of the database that contains the list of tools and information about the tools in different tables. -A folder containing Portable Document Format(PDF) documents of snapshots of the TAPoR user interface. -A folder that contains XML files of the data from the database's tables. -A PDF document that presents the design of the tables in the database. -An API documentation document (PDF).
DOI: 10.5281/zenodo.18567880
title: Screened stability descriptors for hypothetical double perovskites (Tables S6–S13)

description: This dataset provides the calculated stability descriptors (t, μ, Tf, η, and decomposition energy) for 5,420 screened hypothetical double perovskite compounds corresponding to Tables S6–S13.
DOI: 10.15468/dl.4agdxr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Plectroglyphidodon insularis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002245-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dq585
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Loxopholis percarinatum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 485 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002243-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vhjua
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotesia marginiventris",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002246-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30039718
title: RAW DATA supporting “FimH of uropathogenic Escherichia coli enhances infection in prostate cells via JAK/STAT signaling”

description: This repository contains the original raw experimental data that underpin all primary figures and quantitative results presented in the manuscript:<b>“FimH of uropathogenic </b><b><i>Escherichia coli</i></b><b> enhances infection in prostate cells by the modulation of JAK/STAT signaling pathway”</b>.The dataset includes unprocessed primary files corresponding directly to specific figures as follows:<b>Figure 2 – Prostate Cell Infection Imaging</b><b>Folder:</b> <code>FimH rawdata/fig2/0910/</code><br>Original microscopy images of prostate epithelial cells infected with UPEC strains with varied <b>FimH expression</b> (wild-type, deletion, and overexpression). These images support the bacterial adhesion and invasion phenotypes shown in Figure 2.<b>Figure 3 – Quantitative Infection Assays (CFU counts)</b>Raw colony-forming unit (CFU) count data used to quantify intracellular bacterial burden across experimental groups. These data underlie statistical comparisons presented in Figure 3.<b>Figure 4 – Western Blot Analysis of JAK/STAT Signaling</b><b>Folder:</b> <code>FimH WB/figure 4 raw data/20210811-FimH/</code><br>Subfolders include: <code>1-FimH del/</code> and <code>2-FimH overexp/</code>.<br>This contains uncropped TIFF images of immunoblots (e.g., STAT1, IL-6, β-actin loading control) that support the protein expression analyses presented in Figure 4.<b>Figure 5 – Cytokine Quantification (CBA assays)</b>Raw cytokine measurement values (including IL-6 and IFN-γ) from cytometric bead array (CBA) assays. These data support inflammatory mediator analyses shown in Figure 5.<b>Figure 6 – Integrated Signaling Outcomes</b>Combined quantitative datasets derived from CFU counts, cytokine assays, and western blot densitometry used for integrative analysis of how <b>FimH modulates host signaling responses</b>, as shown in Figure 6.<b>Data Integrity Statement:</b><br>All files in this repository represent original, unedited experimental outputs. Processed values and statistical analyses reported in the manuscript were derived directly from these raw data files.
DOI: 10.6084/m9.figshare.30039718.v4
title: RAW DATA supporting “FimH of uropathogenic Escherichia coli enhances infection in prostate cells via JAK/STAT signaling”

description: This repository contains the original raw experimental data that underpin all primary figures and quantitative results presented in the manuscript:<b>“FimH of uropathogenic </b><b><i>Escherichia coli</i></b><b> enhances infection in prostate cells by the modulation of JAK/STAT signaling pathway”</b>.The dataset includes unprocessed primary files corresponding directly to specific figures as follows:<b>Figure 2 – Prostate Cell Infection Imaging</b><b>Folder:</b> <code>FimH rawdata/fig2/0910/</code><br>Original microscopy images of prostate epithelial cells infected with UPEC strains with varied <b>FimH expression</b> (wild-type, deletion, and overexpression). These images support the bacterial adhesion and invasion phenotypes shown in Figure 2.<b>Figure 3 – Quantitative Infection Assays (CFU counts)</b>Raw colony-forming unit (CFU) count data used to quantify intracellular bacterial burden across experimental groups. These data underlie statistical comparisons presented in Figure 3.<b>Figure 4 – Western Blot Analysis of JAK/STAT Signaling</b><b>Folder:</b> <code>FimH WB/figure 4 raw data/20210811-FimH/</code><br>Subfolders include: <code>1-FimH del/</code> and <code>2-FimH overexp/</code>.<br>This contains uncropped TIFF images of immunoblots (e.g., STAT1, IL-6, β-actin loading control) that support the protein expression analyses presented in Figure 4.<b>Figure 5 – Cytokine Quantification (CBA assays)</b>Raw cytokine measurement values (including IL-6 and IFN-γ) from cytometric bead array (CBA) assays. These data support inflammatory mediator analyses shown in Figure 5.<b>Figure 6 – Integrated Signaling Outcomes</b>Combined quantitative datasets derived from CFU counts, cytokine assays, and western blot densitometry used for integrative analysis of how <b>FimH modulates host signaling responses</b>, as shown in Figure 6.<b>Data Integrity Statement:</b><br>All files in this repository represent original, unedited experimental outputs. Processed values and statistical analyses reported in the manuscript were derived directly from these raw data files.
DOI: 10.6084/m9.figshare.30039718.v3
title: <b>Dataset Description and Figure Mapping for Data Availability</b>

description: This repository contains the original raw experimental data that underpin all primary figures and quantitative results presented in the manuscript:<b>“FimH of uropathogenic </b><b><i>Escherichia coli</i></b><b> enhances infection in prostate cells by the modulation of JAK/STAT signaling pathway”</b>.The dataset includes unprocessed primary files corresponding directly to specific figures as follows:<b>Figure 2 – Prostate Cell Infection Imaging</b><b>Folder:</b> <code>FimH rawdata/fig2/0910/</code><br>Original microscopy images of prostate epithelial cells infected with UPEC strains with varied <b>FimH expression</b> (wild-type, deletion, and overexpression). These images support the bacterial adhesion and invasion phenotypes shown in Figure 2.<b>Figure 3 – Quantitative Infection Assays (CFU counts)</b>Raw colony-forming unit (CFU) count data used to quantify intracellular bacterial burden across experimental groups. These data underlie statistical comparisons presented in Figure 3.<b>Figure 4 – Western Blot Analysis of JAK/STAT Signaling</b><b>Folder:</b> <code>FimH WB/figure 4 raw data/20210811-FimH/</code><br>Subfolders include: <code>1-FimH del/</code> and <code>2-FimH overexp/</code>.<br>This contains uncropped TIFF images of immunoblots (e.g., STAT1, IL-6, β-actin loading control) that support the protein expression analyses presented in Figure 4.<b>Figure 5 – Cytokine Quantification (CBA assays)</b>Raw cytokine measurement values (including IL-6 and IFN-γ) from cytometric bead array (CBA) assays. These data support inflammatory mediator analyses shown in Figure 5.<b>Figure 6 – Integrated Signaling Outcomes</b>Combined quantitative datasets derived from CFU counts, cytokine assays, and western blot densitometry used for integrative analysis of how <b>FimH modulates host signaling responses</b>, as shown in Figure 6.<b>Data Integrity Statement:</b><br>All files in this repository represent original, unedited experimental outputs. Processed values and statistical analyses reported in the manuscript were derived directly from these raw data files.
DOI: 10.15468/dl.z2chsd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((96.67797 1.08719,100.90847 1.08719,100.90847 3.44708,96.67797 3.44708,96.67797 1.08719))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pongo tapanuliensis"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002247-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x47asb
title: Occurrence Download

description: A dataset containing 106106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphocelus flammigerus",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 106106 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002212-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnw9mx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Stegastes limbatus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002248-260225131425191/datasets/export for details.