cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13397987.v3
title: Expression of 97 surface markers and RNA (transcriptome wide) in 13165 cells from a healthy young bone marrow donor

description: Seurat v3 object<b><br></b><b>ASSAYS</b>:AB: Antibody expression dataRNA: mRNA expression dataBOTH: Concatenated mRNA and antbody expression matrices<br><b>DIMENSIONALITY REDUCTION</b>MOFA: Multi-OMICS factor analysis to integrate AB and RNA data. MOFA served as input for clustering and further dimensionality reduction.MOFAUMAP: UMAP performed on MOFA dimensions. Display used in the manuscript.<br>MOFATSNE: UMAP performed on MOFA dimensions.<b>Projected</b>: Data was projected on the reference dataset MOFAUMAP coordinates<br><b>METADATA</b><b>ct: </b>Projected cell type (cell type labels from the reference dataset are used).Idents(object) uses an unsupervised clustering performed on this dataset.<br>For the reference dataset, see https://doi.org/10.6084/m9.figshare.13397651.v2<br><b>Changelog</b>Compared to the previous version of the file, projected UMAP coordinates and projected cell type labels were added. Also, neighborhood graphs and normalized data are now contained in the object.
DOI: 10.6084/m9.figshare.14327064.v1
title: Principal component and cluster analyses to evaluate production and milk quality traits

description: ABSTRACT Using multivariate analyses, this study attempted to identify important traits explaining the relationship between milk production and quality produced by Holstein cows. Monthly milk records from three commercial dairy farms located in the Agreste region of Pernambuco, Brazil, collected in the period from 2007 to 2017, were used. A total of 5,872 observations regarding milk production, milk components and somatic cell score (SCS) were analyzed using principal component analysis (PCA) and cluster analysis. According to the former analysis, the first three principal components explained 79.69% of the total variation. Total solids content contributed 29.66% of the variation in the first principal component, while lactose content contributed 49.43% of the variation in the second principal component. According to the latter analysis, three clusters differed for all characteristics (p&lt;0.001) and cluster 2 concentrated 43.15% (2,534) of the information with lower SCS and higher lactose content and milk production. Total solids, lactose and fat were considered the most representative traits explaining the variability of the data set. The multivariate techniques used in this study proved useful in obtaining effective characteristics, with three factors considered important in explaining the relationship between Holstein cows’ milk production and quality.
DOI: 10.15468/dl.hpef82
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Hippocamelus bisulcus (Molina, 1782))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016421-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15579982
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250602w Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250602w Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15579983
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250602w Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250602w Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.13755295
title: Distinct Stromal Cell Populations Define the B-cell Acute Lymphoblastic Leukemia Microenvironment

description: Processed single-cell RNA-seq from the study 



10X Genomics CellRanger output (barcodes.tsv, genes.tsv, matrix.mtx) for each each sample

Metadata


Distinct Stromal Cell Populations Define the B-cell Acute Lymphoblastic Leukemia Microenvironment

Mauricio N. Ferrao Blanco1, Bexultan Kazybay1, Mirjam Belderbos1, Olaf Heidenreich1, Hermann Josef Vormoor1,2

1 Princess Máxima Center for Pediatric Oncology, Utrecht, the Netherlands

2 University Medical Center Utrecht, Utrecht, the Netherlands

Abstract

The bone marrow microenvironment is critical for B-cell acute lymphoblastic leukemia (B-ALL) but its cellular heterogeneity remains poorly defined. Here, we employed single-cell RNA sequencing to comprehensively characterize the stromal and hematopoietic niches in pediatric B-ALL. Our analysis revealed two distinct mesenchymal stromal cell (MSC) populations as primary leukemia-supportive niches: early mesenchymal progenitors and adipogenic progenitors. Single-cell transcriptomic analysis infers that ALL blasts use distinct cell-cell interactions to communicate with the different stromal populations. Purified adipogenic progenitors from the bone of children with ALL support survival of the leukemic blasts ex vivo and their signature is enriched in relapse samples. Our data establish adipogenic progenitors as a distinct and novel component of the ALL niche.
DOI: 10.15468/dl.b4hans
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aspicarpa sericea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 86 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004169-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t222rv
title: Occurrence Download

description: A dataset containing 21687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis capaccinii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 21687 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004170-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hpvy9
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barnebya harleyi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 221 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004171-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18437889
title: Supplementary Materials for LCA
DOI: 10.15468/dl.9hyskr
title: Occurrence Download

description: A dataset containing 2786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis ciliolabrum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 2786 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004174-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr6k9j
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachylophon curtisii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004175-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18444561
title: HippUnfold: tpl-multihist7 surface-based template and atlas for dev-v2.0.0, with updated (rotated) unfolded space

description: Surface-based template and atlas files for use in HippUnfold v2.0.0.

 

From:

https://github.com/khanlab/hippunfold-atlases

Branch: updated-unfold

Commit: 9c10d3c
DOI: 10.15468/dl.dmv9w4
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prangos pabularia"
 ]
}

 The dataset includes 772 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.capus4
title: Occurrence Download

description: A dataset containing 1297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis crypticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 1297 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004179-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqby5k
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bronwenia cinerascens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 97 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004180-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4gkuu
title: Occurrence Download

description: A dataset containing 7863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis dasycneme",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 7863 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004182-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446561
title: Supplementary Material for Upcycling Excess Concrete with CDW-Derived Alternatives: Performance and Environmental Evaluation
DOI: 10.5281/zenodo.18446562
title: Supplementary Material for Upcycling Excess Concrete with CDW-Derived Alternatives: Performance and Environmental Evaluation
DOI: 10.15468/dl.t2un9v
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bunchosia montana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 158 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004184-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wag4ju
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prangos lophoptera"
 ]
}

 The dataset includes 74 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004185-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446576
title: Surface Phonon Hall Viscosity Induced Phonon Chirality and Nonreciprocity in Magnetic Topological Insulator Films
DOI: 10.5281/zenodo.18446575
title: Surface Phonon Hall Viscosity Induced Phonon Chirality and Nonreciprocity in Magnetic Topological Insulator Films
DOI: 10.15468/dl.jd47cf
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Burdachia prismatocarpa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 346 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004189-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hthpuv
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Byrsonima spicata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004191-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyh8x8
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callaeum septentrionale",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 319 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004195-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdxu2b
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caucanthus albidus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004198-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3caf2
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Christianella multiglandulosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 133 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004201-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrngrv
title: Occurrence Download

description: A dataset containing 10326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas andium",
 "Year 1975-2026"
 ]
}

 The dataset includes 10326 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004200-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spnck7
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicella bracteosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 259 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004205-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbbcjy
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cycas dolichophylla"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004207-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.artjxn
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinopterys eglandulosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 510 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004209-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjh9ad
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gloydius chambensis"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004212-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31223410
title: Nationwide trends and regional variation in intravitreal injections and anti-VEGF agent use in Japan (FY2017–FY2022)

description: This figshare item provides the derived datasets and analysis tables used in our nationwide observational study of intravitreal injections in Japan using NDB Open Data (FY2017–FY2022). Files include: (1) annual national totals for procedure code G016 and agent-specific anti-VEGF counts (aflibercept, ranibizumab, brolucizumab, faricimab) with the non–anti-VEGF remainder; (2) prefecture-level crude utilization rates (per 100,000 population); (3) sensitivity analyses addressing population aging (≥75-year denominator rates and indirect age-standardization using two age groups: &lt;75 and ≥75 years), provided as Supplementary Tables S2–S4; and (4) regional comparison tables for Eastern vs Western Japan and metropolitan vs non-metropolitan groupings. All files contain only aggregated, de-identified counts and derived rates. No individual-level data are included. A README file describes fiscal-year definitions (April–March), variables, and calculation steps. NDB Open Data and official population statistics used as inputs are publicly available; this repository contains the processed tables and outputs needed to reproduce the reported results.
DOI: 10.6084/m9.figshare.31223410.v1
title: Nationwide trends and regional variation in intravitreal injections and anti-VEGF agent use in Japan (FY2017–FY2022)

description: This figshare item provides the derived datasets and analysis tables used in our nationwide observational study of intravitreal injections in Japan using NDB Open Data (FY2017–FY2022). Files include: (1) annual national totals for procedure code G016 and agent-specific anti-VEGF counts (aflibercept, ranibizumab, brolucizumab, faricimab) with the non–anti-VEGF remainder; (2) prefecture-level crude utilization rates (per 100,000 population); (3) sensitivity analyses addressing population aging (≥75-year denominator rates and indirect age-standardization using two age groups: &lt;75 and ≥75 years), provided as Supplementary Tables S2–S4; and (4) regional comparison tables for Eastern vs Western Japan and metropolitan vs non-metropolitan groupings. All files contain only aggregated, de-identified counts and derived rates. No individual-level data are included. A README file describes fiscal-year definitions (April–March), variables, and calculation steps. NDB Open Data and official population statistics used as inputs are publicly available; this repository contains the processed tables and outputs needed to reproduce the reported results.
DOI: 10.15468/dl.c7atsb
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ectopopterys soejartoi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 72 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004214-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9jpfa
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Osbornictis piscivora"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004215-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mes53q
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gloydius himalayanus"
 ]
}

 The dataset includes 148 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004218-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnwjbk
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flabellariopsis acuminata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004219-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73hynw
title: Occurrence Download

description: A dataset containing 266085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis daubentonii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 266085 records from 2204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004188-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.