cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20673255.v5
title: Replication Package of the study "Exploring the Notion of Risk in Reviewer Recommendation"

description: Description <strong>This is a Dockerized version of the repository https://github.com/software-rebels/RAR_Recommender . The package is developed to ease the replication of our study for researchers and practitioners.</strong> <br> This package contains the necessary information to replicate the study "Exploring the Notion of Risk in Reviewer Recommendation." This code extends the RelationalGit package (https://github.com/CESEL/RelationalGit) from the study of E. Mirsaeedi and P. C. Rigby [1]. It adds some functionality needed to incorporate the concept of the fix-inducing likelihood of a project. In addition to our dataset, this repository also has the supporting materials for our study. The supporting materials are in the "ICSME_online_materials_ICSME.pdf" and contain the following items: Table 1 contains the detail of the dataset and some related statistics for each studied project. Table 2 shows the risk measures used in our defect prediction model. We use Commit Guru Tool to extract the data from the GitHub repositories and then use this data to train our defect prediction model. Figure 1 illustrates the distribution of predicted defect probability of different projects. This distribution shows how the defect probability of different periods is similar to the adjacent periods. Replication Steps: Read Requirements.md and ensure the necessary software/hardware requirements. Read Install.md and install the necessary packages to run the containers. Follow the steps in ReadMe.md to reproduce the results of our study. References: [1] E. Mirsaeedi and P. C. Rigby, 'Mitigating turnover with code review recommendation: Balancing expertise, workload, and knowledge distribution', στο Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering, 2020.
DOI: 10.6084/m9.figshare.27897204.v1
title: Metagenomic assembled genomes (MAGs) data

description: DMP_1921_MAGs contains 1921 Metagenomic assembled genomes (MAGs) .fa files (sequence)DMP_1921_gff3 contains 1921 annotation gff3 files (using BAKTA)MAG_information contains quality and relative abundance information of these MAGs.sgv_full contains SV data for all individuals included in this papers_abun contains species abundance data for all individuals included in this paper<br>
DOI: 10.6084/m9.figshare.29083745.v1
title: 3D GeFi simulation data

description: 3D GeFi simulations of collisionless reconnection under strong guide fields.
DOI: 10.6084/m9.figshare.27930912.v2
title: Datafile 4. Filtering annotated species with gene completeness &gt;=80%

description: Filtering annotated species with gene completeness &gt;=80%<br>
DOI: 10.6084/m9.figshare.10005065.v2
title: Treatment with commonly used antiretroviral drugs induces a type I/III interferon signature in the gut in the absence of HIV infection: RNAseq from MTN-017

description: The purpose of this data set was to measure how the expression of RNA transcripts in rectal biopsies is affected by use of oral tenofovir disoproxil fumarate/emtricitabine, daily rectal tenofovir gel, or pericoital rectal tenofovir gel for prevention of HIV infection. Transcripts were measured by RNAseq from samples taken from the MTN-017 study at baseline and after two months of each treatment. <br>In the count_matrix tab, each column is a sample and each row is a transcript. Values are counts of transcripts. <br>In the transcript_metadata tab, each row is a transcript. <br>In the sample_metadata tab, each row is a sample.<br>The complete methods and results are described here: https://doi.org/10.1101/701961
DOI: 10.6084/m9.figshare.26028931.v1
title: 3 models for AMP prediction

description: 3 models for AMP prediction
DOI: 10.17632/dv7t7mrt3j
title: Target and Non-target Discovery Screening of Poly-and Per-Fluoroalkyl Substances (PFASs) in Environmental Biota-Samples

description: There are workflow and databases for non-target screening PFASs in complex environmental biota- samples using ultra-high performance liquid chromatography and quadrupole- orbitrap high-resolution mass spectrometer with software of Compound Discoverer. 
User can download these databases and import them into Mass Lists, Spectral Libraries and Compound Classes in Lists & Library of Compound Discoverer software, respectively, and then use the workflow to make non-target screening for PFASs.
DOI: 10.17632/zghxwmy3w2
title: Data for: Effect of foliar applications of phosphites on tomato plant growth, nutritional status and defense responses

description: Data set includes the raw data of results on biomass production (weight of roots, stems and leaves), gene expression (three genes) and nutrient concentration in leaves of hydroponic tomato plants.
DOI: 10.6084/m9.figshare.28722983.v1
title: Legal Paper_Data_v2.xlsx

description: Data set on sexual violence cases from Post rape care forms from 2017 to 2024.
DOI: 10.17632/sg3796w62j
title: Vintage Guitar Pricing

description: Vintage Guitar Pricing Dataset
DOI: 10.6084/m9.figshare.807694.v1
title: nveGenes.vienna130208.fasta

description: Nematostella vectensis transcriptome and gene models v2.0 Description: The gene models, transcripts and other derived data were generated from a comprehensive transcriptome survey of samples taken from five embryonic stages, adult femal, and adult male samples. In total 1.6 billion 76-100 bp pair-end reads were obtained. The reads were mapped onto the N. vectensis genome v1.0, and new gene models were constructed using the RNA-seq evidence with the Augustus gene caller. These RNA-seq evidence based gene models are identified by a NVE prefix.
DOI: 10.17632/tdxv8x7b7r
title: 14C DATABASE for the TRB site of Kałdus, PL

description: Set of radiocarbon dates, sampled from the TRB site in Kałdus, Chełmno commune, Poland
DOI: 10.17632/wwzxwcwj62
title: Immunoblots PROT3ECT

description: Uncropped immunoblots for "Engineered E. coli for the in situ secretion of therapeutic payloads into the gut"
DOI: 10.6084/m9.figshare.12016341.v1
title: Applying frequent-pattern mining and time geography to impute gaps in smartphone-based human-movement data

description: Though GPS-based human trajectory data have been commonly used in travel surveys and human mobility studies, missing data or data gaps that are intrinsically relevant to research reliability remain a critical and challenging issue. This study proposes a novel framework for imputing data gaps based on frequent-pattern mining and time geography, which allows for considering spatio-temporal travel restrictions during imputation by evaluating the spatio-temporal topology relations between the space-time prisms of gaps and corresponding frequent activities or trips. For the validation, the proposed framework is applied to raw GPS trajectories that were collected from 139 participants in Switzerland. In the case study, the temporal and spatio-temporal gaps are artificially generated by randomly choosing activities and trips from the trajectory data. Through comparing the mobility indicators (i.e. duration and distance) calculated from raw data, imputed data, and data with gaps, we quantitatively evaluate the performance of the proposed method in terms of Pearson correlation coefficients and deviation. We further compare the framework with the shortest path interpolation method based on the generated spatio-temporal gaps. The comparison results demonstrate the performance and advantage of the proposed method in imputing gaps from GPS-based human movement data.<br>
DOI: 10.6084/m9.figshare.26003491.v1
title: Carpooling China

description: Carpooling presents a sustainable alternative to single-occupancy vehicles in China, given its rapidly growing urban population and reliance on private cars. We tested pop-up messages in a mock transportation app using a 4 x 2 between-subjects design (N=1600) testing the effects of three motivational messages – environmental benefits, carpool safety, and monetary savings (vs. no message control group). Furthermore, we tested the effect of placing the carpool option as the (default) first option shown to participants (vs. the second option), both in the choice for an urgent trip, and a non-urgent trip. Results showed that carpool was preferred for non-urgent trips, and placing carpool as the default choice in non-urgent trips increased average demand by 10% (4% in the absence of any message). For urgent trips, single-occupancy rides were preferred but presenting an environmental benefits or safety messages about carpooling significantly increased the odds of carpool being selected.
DOI: 10.17632/bvjg2p8w3h
title: the raw data in my submitted manuscript
DOI: 10.6084/m9.figshare.11757078.v1
title: Euterpe edulis seed germination parameters and genotype selection

description: ABSTRACT. The palm tree juçara (Euterpe edulis Mart) is considered one of the most important and threatened native species in the Atlantic Forest. The search for juçara seeds (Euterpe edulis Martius) has increased, generating a need for technologies favorable to their production, quality and conservation. The aim of this study was to describe the seed germination patterns of 45 juçara accessions by using a nonlinear model to examine the behavior of these patterns and select superior genotypes. After clustering 45 juçara accessions into four groups, four nonlinear models, namely, the logistic, Gompertz, von Bertalanffy and Weibull models, were tested based on their fit for each group of accessions. The Gompertz model presented the best fit to describe the germination growth curve of E. edulis seeds. Groups 3 and 4 presented the highest daily germination rates and were considered the most vigorous. Analysis of deviance was performed, revealing genetic variability among the genotypes in terms of seed germination and vigor. It was possible to find a nonlinear model that best explained our data, and this model may also be a promising model for other palm tree species. It is possible to select genotypes based on the characters we analyzed, due to the elevated genetic variability.
DOI: 10.6084/m9.figshare.24100050.v2
title: Data

description: the association between the single nucleotide polymorphism of AIM2 gene and susceptibility to periodontitis with and without coronary heart disease and their correlation with clinical periodontal parameters
DOI: 10.6084/m9.figshare.28052417.v2
title: Daily melt flux estimated from Antarctic automatic weather station data

description: Daily melt flux estimated from Antarctic automatic weather station data based on a surface energy balance model.The dataset comprises melt fluxes from 16 automatic weather stations in Antarctica.Melt fluxes from 10 IMAU stations were provided by Jakobs et al., (2022).Jakobs, C. L., Reijmer, C. H., Smeets, C. J. P. P., Trusel, L. D., Van De Berg, W. J., Van Den Broeke, M. R., & Van Wessem, J. M. (2020). A benchmark dataset of in situ Antarctic surface melt rates and energy balance. Journal of Glaciology, 66(256), 291–302. https://doi.org/10.1017/jog.2020.6<br>
DOI: 10.17632/9gmn6gsb6p
title: gVOF: An open-source package for unsplit geometric volume of fluid methods on arbitrary grids

description: The gVOF package implements several accurate and efficient geometric volume of fluid (VOF) methods on arbitrary grids, either structured or unstructured with convex or non-convex cells, based on multidimensional unsplit advection and piecewise linear interface calculation (PLIC) schemes, with the purpose of facilitating and extending the use of advanced unsplit geometric VOF methods in new or existing computational fluid dynamics codes. The package includes a complete and self-contained set of routines for VOF initialization, interface reconstruction and fluid advection, and uses as external libraries a set of publicly available in-house tools to perform several analytical and geometrical operations. These operations may involve handling of high-complex non-convex flux polyhedra, even with self-intersecting faces, which are robustly and efficiently treated in this work without the need of costly techniques based on convex decomposition. Results for the accuracy, computational efficiency, and volume (local and global) conservation properties of different combinations of the implemented advection and reconstruction methods are presented for several numerical tests on structured and unstructured grids. An extensive comparison with results obtained by other authors using advanced geometric VOF methods shows the outstanding performance of the gVOF package in terms of efficiency and accuracy. To demonstrate the performance of the package in solving complex two-phase flow problems, the implemented methods are combined with an existing in-house code to simulate the impact of a water drop on a free surface.
DOI: 10.17632/cyd7wbh4ch
title: A new program to calculate differential and total cross sections for electron-atom or ion scattering using the momentum transfer formalism

description: Title of program: MOMTRANF Catalogue Id: AANW_v1_0 Nature of problem The scattering of low energy electrons by atoms or ions in the LS coupling scheme, or the rotational or rotovibrational excitation of diatomic molecules by electron impact in the laboratory frame. CORRECTION SUMMARY: Vol:Year:Page 52:1988:165 "000ACORRECTION 26/09/88" "A new program to calculate differential and total cross sections for electron-atom or ion scattering using the momentum transfer formalism. (C.P.C. 27(1982)25)." S.A. Salvini Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data AANW_v1_0; MOMTRANF; 10.1016/0010-4655(82)90004-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/sp7knj8bjr
title: Antisocial and Borderline Personality Disorder and Childhood Trauma in Male Prisoners: Mediating Effect of Difficulties in Emotional Regulation

description: This study aimed to investigate the prevalence of probable antisocial personality disorder (ASPD) and borderline personality disorder (BPD) among prisoners, and further examine the mediating effect of difficulties in emotional regulation (ER) between childhood trauma and symptoms of ASPD and BPD. 
A total of 1,491 male participants (35.4 ± 9.69 years) were recruited from a prison in Guangdong, China. The symptoms of ASPD and BPD, childhood trauma, difficulties in ER, and suicide were measured by self-administered structured questionnaires. Logistic regressions were performed to investigate the associations of ASPD and BPD with suicide. Path analysis was used to examine the mediating effects of difficulties in ER between childhood trauma and symptoms of ASPD and BPD.
DOI: 10.6084/m9.figshare.19762627.v2
title: Simulating diverse forest management options in a changing climate on a Pinus nigra subsp. laricio plantation in Southern Italy

description: Simulation outputs of a Laricio pine stand development at the Bonis watershed (southern Italy) under three climate scenarios and six forest management options using the 3D-CMCC-FEM process-based forest model.
The model code is also included.
DOI: 10.6084/m9.figshare.26564140.v1
title: Global surface ocean fCO2 from CSIR-ML6 (v2024)

description: The CSIR-ML6-v2024 is an update to the original CSIR-ML6 method by Gregor et al. (2019), extending the CO2 data product until 2023-12-15. The following changes have been made:SOCAT-v2024 is used;ERA5 reanalysis wind data and mean sea level pressure (MSLP) are used (instead of ERA-interim);The gas-exchange coefficient (kw) used, is appropriately scaled for the ERA5 wind product as recommended by Fay and Gregor et al. (2021);fCO2, the sea surface fugacity of CO2 is reported as per the Global Carbon Budget recommendation instead of pCO2, the sea surface partial pressure of CO2.<br><b>NETCDF FILE:</b>The dataset is stored in a single netCDF file and it mainly contains the following data variables:sfco2 = surface fugacity of CO2 for the ensemble average (in µatm). Therefgco2 = air-sea CO2 fluxes (in mol m-2 yr-1)area = the ocean area per pixel (in m2) - doubles as mask for the data<br><b>CITATION</b>Please cite the dataset as Djeutchouang et al. (2024), see the DOI: 10.6084/m9.figshare.26564140, as well as the original publication by Gregor et al. (2019), see the DOI: 10.5194/gmd-12-5113-2019.<br><b>HOST</b>CSIR, Southern Ocean Carbon – Climate Observatory (SOCCO)
DOI: 10.6084/m9.figshare.4909304.v1
title: RNA-seq raw data of PS-C_2_1

description: File 1 of RNA-seq raw data of
C48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end
sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.17632/d9ggkzp7bc
title: Content moderation from Twitter to X: policies, enforcement and community notes

description: This dataset contains: (1) Twitter/X policies from 2006 to late 2024 in markdown format; (2) calculations of policy changes over time; (3) Dutch-speaking community notes and corresponding posts, categorised by topic and user types; and (4) temporal search ranking of thousands of posts about immigration, dating from September to October 2023.
DOI: 10.6084/m9.figshare.28491107.v1
title: Datasets of species mixing effects

description: Database associated with Guo J. et al. "Positive effects of species mixing on biodiversity of understory plant communities and soil health in forest plantations"
DOI: 10.17632/v6yj8cpj9s
title: Dataset of "Skin blood flow and skin temperature 24 h after induced muscle damage"

description: Dataset of the paper "Skin blood flow and skin temperature 24 h after induced muscle damage"
DOI: 10.6084/m9.figshare.25370752.v2
title: 16S rRNA sequencing data of preterm infants before onset of meningitis

description: Study population: preterm infants (&lt;30 weeks) with late onset meningitis and matched controls (GA, birth weight, center)Sample type: stool samples collected 1 to 10 days before onset of disease and postnatal age matched control samplesData type: Contains OTU abundances as obtained by 16S rRNA analysis
DOI: 10.17632/934kkhk7sc
title: Data for: The Trust Game Does Not (Only) Measure Trust: The Risk-Trust Confound Revisited

description: This zip file contains the data and code to reproduce the estimates in the paper entitled "The Trust Game Does Not (Only) Measure Trust: The Risk-Trust Confound Revisited" by Chetty, Hofmeyr, Kincaid and Monroe
DOI: 10.17632/dghd5gr8gz
title: Bathymetry grid (5 m cell size) for Lord Howe Island and Balls Pyramid shelves, southwest Pacific Ocean

description: This dataset is a seamless, high resolution (5m cell size) bathymetry model of Lord Howe Island and Balls Pyramid. 

Multibeam echo sounder data were acquired aboard two voyages on the CSIRO Marine National Facility R.V. Southern Surveyor in 2008 and 2013. Gaps in data coverage were interpolated using Natural Neighbor in ArcGIS 10.4. Data were clipped at 0 to 300 m depth. Shallow depth data derived from World View II satellite imagery of Lord Howe Island (collected in 2013) and Quickbird Imagery of Balls Pyramid (collected in 2009) were excluded from this dataset due to low accuracy. A 'Confidence' shapefile is included, indicating source coverage and relative accuracy of input datasets. 

Full description of methods is outlined in the following open-access publication: http://www.mdpi.com/2076-3263/8/1/11/htm
DOI: 10.6084/m9.figshare.1533075.v1
title: RNAseq_data_tables

description: RNAseq data, file name legend: condition1_vs_condition2
DOI: 10.17632/gbcxky8wwz
title: Scopus database about teaching statistics

description: Scopus database about teaching statistics includes 190 document metadata.
DOI: 10.6084/m9.figshare.29046647.v2
title: Questionário de Avaliação Diagnóstica - QAD - Nível de Maturidade do Gerenciamento de Infraestrutura TIC Governo

description: O presente questionário visa avaliar a maturidade dos processos de gerenciamento de infraestrutura de TI com base nas práticas técnicas do ITIL 4. Ele pode ser aplicado a qualquer organização, independentemente da adoção formal do framework, incluindo municípios de diferentes portes. O objetivo é identificar pontos fortes e áreas de melhoria para implementar ou aprimorar práticas de gestão da infraestrutura.
DOI: 10.6084/m9.figshare.24591381.v1
title: img2mol dataset

description: Dataset of hand drawn images of molecular depictions with instructions ready to train Img2Mol
DOI: 10.6084/m9.figshare.28077629.v1
title: <b>Mare milk and fermented mare milk alleviate DSS-induced ulcerative colitis in mice by reducing inflammation and modulating intestinal flora</b>

description: 马奶 （MM） 和马奶发酵 （FM） 是营养价值高的专用动物奶，含有多种能够抵抗炎症反应和氧化应激的功能性活性物质。然而，关于维持肠道稳态的研究一直不够。本研究旨在探讨 MM 和 FM 对小鼠模型中 DSS 诱导的溃疡性结肠炎预防的影响，并初步阐明其潜在机制。结果显示，MM 和 FM 对 DSS 的损伤具有不同程度的保护作用，通过抑制体重减轻、减少结肠长度缩短和恢复肠道结构来缓解溃疡性结肠炎。此外，MM 和 FM 维持肠道紧密连接蛋白水平以修复屏障功能，下调炎性细胞因子（例如 IL-1β、TNF-α、IL-6, 和 iNOS）并增强人体’的抗氧化防御系统。此外，MM 和 FM 通过改善肠道菌群多样性和重塑其结构来调节肠道微环境的失调，包括增加厚壁菌门和拟杆菌门的比例以及有益细菌属 （例如，Akkermansia。总之，马奶和发酵马奶可以作为预防溃疡性结肠炎和维持肠道稳态的饮食资源。
DOI: 10.6084/m9.figshare.8180915.v1
title: Small Sample Analysis of Modern Slavery Statements in Cocoa and Garment Sectors

description: In advance of fieldwork to examine what impact, if any, the relatively new Transparency in Supply Chain (TISC) requirement is having on working conditions in garment and cocoa sectors supply chains, where there are known issues around exploitation and child labour, a small sample analysis of 40 Modern Slavery Act statements produced in the UK garment and cocoa sectors was undertaken by the University of Liverpool Clothes, Chocolate and Children Project.
DOI: 10.17632/3knm93dkc5
title: An Image Dataset of Taro Leaf Blight Disease Collected from the West African Sub-Region

description: Taro Leaf Blight, caused by the pathogen Phytophthora colocasiae, manifests as distinct necrotic spots with white sporangia bands and orange droplets on the leaves. Thriving in temperatures between 25°C to 30°C, the disease spreads rapidly through rain splash and wind-blown spray. This blight not only reduces yields but also affects the income of smallholder farmers who depend heavily on taro cultivation. In recent years, taro yields in Africa have declined due to this disease, combined with other factors such as limited input utilization and cultivation on less fertile lands.

Early detection of Taro Leaf Blight is essential for effective management and prevention. Technologies such as smartphone-based apps, handheld spectrometers, drone-mounted sensors, and biosensors are being explored to enable real-time disease identification. These methods empower farmers to implement timely measures, thus minimizing yield losses and preserving crop quality. However, challenges like the financial barriers of advanced technologies and the need for technical knowledge pose limitations, especially for smallholder farmers in developing countries.

A critical part of combating TLB is building robust datasets for training deep-learning models for disease detection. To this end, a meticulous data collection effort was undertaken by teams in Nigeria and Ghana. This initiative focused on capturing images of taro plants at various stages of TLB infection—Taro Early Blight, Taro Mid Blight, Taro Late Blight, and Taro Healthy. The result of the initiative is the Taro Leaf Blight Disease Image Dataset. 

The dataset consists of 18,248 images. The breakdown of each class is as follows:
Taro-Late: 1,270
Taro-Mid: 3,370
Taro-Early: 4,864
Taro-Healthy: 8,744
Taro-Not-Early: 4,640 (Combination of Taro-Late & Taro-Mid)
Each image is a JPG (RGB) of size 500x500. 

Support for implementation of project activities was made possible by the Research Grant (109705-001/002) by the Responsible Artificial Intelligence Network for Climate Action in Africa (RAINCA) consortium made up of WASCAL, RUFORUM and AKADEMIYA2063 provided by IDRC.