cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0962995.10fu
title: SH0962995.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0962996.10fu
title: SH0962996.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0962997.10fu
title: SH0962997.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0962998.10fu
title: SH0962998.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.w2vcdy
title: Occurrence Download

description: A dataset containing 76802 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthemis arvensis L."
 ]
}

 The dataset includes 76802 records from 1009 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096045-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weh674
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ravenea declivium J.Dransf. & Rakotoarin."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096152-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fms7bt
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rangaeris trilobata Summerh."
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096154-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctw7x2
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia sepicana Diels"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096153-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am8pa9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clinopodium grandiflorum (L.) Kuntze",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096156-240321170329656/datasets/export for details.
DOI: 10.15468/dl.unrkx5
title: Occurrence Download

description: A dataset containing 25951 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vanellus leucurus (M.H.K.Lichtenstein, 1823)"
 ]
}

 The dataset includes 25951 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096155-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f76k7x
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ravenea delicatula Rakotoarin."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096158-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmcb6c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia tessellata Steenis ex A.J.Scott"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096160-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sd7t7
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranopisoa rakotosonii (Capuron) J.-F.Leroy"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096161-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7xgns
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clinopodium graveolens (M.Bieb.) Kuntze",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096159-240321170329656/datasets/export for details.
DOI: 10.15468/dl.d3bw3b
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ravenea dransfieldii Beentje"
 ]
}

 The dataset includes 55 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096164-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24c95z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clinopodium menthifolium (Host) Merino",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096166-240321170329656/datasets/export for details.
DOI: 10.15468/dl.5z84gz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus abbaianus Dunkel"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096167-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gya6yy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia toratot N.Snow"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096165-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25534636
title: LT-A6.csv.gz

description: Single-nucleus RNA-sequencing of the thalamus in rats.
DOI: 10.6084/m9.figshare.25534636.v1
title: LT-A6.csv.gz

description: Single-nucleus RNA-sequencing of the thalamus in rats.
DOI: 10.15468/dl.2z79yf
title: Occurrence Download

description: A dataset containing 9398 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocarpus macrophyllus (Thunb.) Sweet"
 ]
}

 The dataset includes 9398 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096168-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj4ukm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clinopodium nepeta (L.) Kuntze",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096169-240321170329656/datasets/export for details.
DOI: 10.15468/dl.32h58e
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ravenea glauca Jum. & H.Perrier"
 ]
}

 The dataset includes 95 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096170-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rn562h
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus abchasicus Freyn ex Sommier & Levier"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096171-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puyscx
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia uniflora (Ridl.) Burkill"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096172-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.meqa5u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clinopodium vulgare L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096173-240321170329656/datasets/export for details.
DOI: 10.15468/dl.a2wxmr
title: Occurrence Download

description: A dataset containing 33323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthemis cotula L."
 ]
}

 The dataset includes 33323 records from 957 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096162-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt2uvw
title: Occurrence Download

description: A dataset containing 3641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucospermum conocarpodendron (L.) H.Buek"
 ]
}

 The dataset includes 3641 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022041-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15210026
title: Synthetic calcium data for the 6.4 mm-long uncorrected microendoscope

description: This dataset is related to the article titled "Aberration correction in long GRIN lens-based microendoscopes for extended field-of-view two-photon imaging in deep brain regions".

Authors: 

Andrea Sattin1,2,*, Chiara Nardin1,2,*, Simon Daste3, Monica Moroni2,4, Innem Reddy5, Carlo Liberale5, Stefano Panzeri2,6, Alexander Fleischmann3, Tommaso Fellin1,2,#

*equal contribution; #corresponding author: tommaso.fellin@iit.it

Affiliations:

1Optical Approaches to Brain Function Laboratory, Istituto Italiano di Tecnologia, Genova, Italy

2Neural Coding Laboratory, Istituto Italiano di Tecnologia, Genova and Rovereto, Italy

3Department of Neuroscience and Carney Institute for Brain Science, Brown University, Providence, USA

4Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems @UniTn, Istituto Italiano di Tecnologia, Rovereto, Italy

5Biological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

6Institute for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany

DOI: https://doi.org/10.7554/eLife.101420.3

Description:

Data contained in this dataset were used to generate Figure 5,6 and figure supplements 1,2 related to Figure 6. Data are synthetic calcium t-series (tiff files) simulating the activity of neuronal populations virtually sampled using the 6.4 mm-long uncorrected microendoscope.  

We generated synthetic calcium t-series to evaluate the impact of the improved optical performance of long aberration corrected microendoscopes on the ability to extract information about neuronal activity. 

To build synthetic calcium data, we first generated neurons with 3D distribution and anatomical properties (i.e., cell size and cell density) similar to those measured in the mouse olfactory cortex, the ventral brain region which we imaged in vivo, and the biophysical characteristics of one of the two indicators used in our experiments, jGCaMP8f. We then simulated the optical sampling of 3D volume of neurons with the point spread function (PSF) properties of the uncorrected and corrected microendoscopes previously characterized. Fluorescence signals integrated over the PSF volume were then projected on a 2D matrix of pixels in time, with a frequency of 30 Hz, to obtain synthetic t-series (duration: 5 min).
DOI: 10.5281/zenodo.15210027
title: Synthetic calcium data for the 6.4 mm-long uncorrected microendoscope

description: This dataset is related to the article titled "Aberration correction in long GRIN lens-based microendoscopes for extended field-of-view two-photon imaging in deep brain regions".

Authors: 

Andrea Sattin1,2,*, Chiara Nardin1,2,*, Simon Daste3, Monica Moroni2,4, Innem Reddy5, Carlo Liberale5, Stefano Panzeri2,6, Alexander Fleischmann3, Tommaso Fellin1,2,#

*equal contribution; #corresponding author: tommaso.fellin@iit.it

Affiliations:

1Optical Approaches to Brain Function Laboratory, Istituto Italiano di Tecnologia, Genova, Italy

2Neural Coding Laboratory, Istituto Italiano di Tecnologia, Genova and Rovereto, Italy

3Department of Neuroscience and Carney Institute for Brain Science, Brown University, Providence, USA

4Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems @UniTn, Istituto Italiano di Tecnologia, Rovereto, Italy

5Biological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

6Institute for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany

DOI: https://doi.org/10.7554/eLife.101420.3

Description:

Data contained in this dataset were used to generate Figure 5,6 and figure supplements 1,2 related to Figure 6. Data are synthetic calcium t-series (tiff files) simulating the activity of neuronal populations virtually sampled using the 6.4 mm-long uncorrected microendoscope.  

We generated synthetic calcium t-series to evaluate the impact of the improved optical performance of long aberration corrected microendoscopes on the ability to extract information about neuronal activity. 

To build synthetic calcium data, we first generated neurons with 3D distribution and anatomical properties (i.e., cell size and cell density) similar to those measured in the mouse olfactory cortex, the ventral brain region which we imaged in vivo, and the biophysical characteristics of one of the two indicators used in our experiments, jGCaMP8f. We then simulated the optical sampling of 3D volume of neurons with the point spread function (PSF) properties of the uncorrected and corrected microendoscopes previously characterized. Fluorescence signals integrated over the PSF volume were then projected on a 2D matrix of pixels in time, with a frequency of 30 Hz, to obtain synthetic t-series (duration: 5 min).
DOI: 10.15468/dl.zsuqj3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Abundance of broken diatom frustules measured on water bottle samples at station PS58/092-3"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010140-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83b87h
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boloria selenis (Eversmann, 1837)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 91 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065528-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85p9ww
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amomum tephrodelphys K.Schum."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006561-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42vc8f
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Androsace kouytchensis Bonati"
 ]
}

 The dataset includes 27 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006568-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwkeww
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Nepal",
 "HasCoordinate is true",
 "TaxonKey is Yuhina bakeri Rothschild, 1926",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010140-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxbdcb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dyckia nana Leme & O.B.C.Ribeiro"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158173-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.