cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.31zcrjdq6
title: A paradoxical bias in knowledge about Norwegian freshwater fishes: Research efforts during 1980–2020

description: Norwegian freshwater systems are in general species-poor. That is
 particularly the case for freshwater fishes. Only 32 species are
 considered native, whereas an additional 12 species are non-native. Some
 of the non-native species are also considered to be invasive and have
 negative ecosystem effects. Freshwater fishes are exposed to numerous
 stressors throughout their life cycle, many of which are of anthropogenic
 origin. In order to manage and conserve the diversity of fish there is a
 need for basic knowledge and understanding. Here I make an effort to
 review the published research on all Norwegian freshwater fish species
 during the 1980–2020 period, based on a standardized search on the Web of
 Science. Over 2000 relevant articles were retrieved and evaluated
 following the search. The research activity has been highly biased, with
 most research activity directed at a few species of high economic and
 societal value. Most work was directed at Atlantic salmon Salmo salar and
 brown trout S. trutta, and in general towards species within the salmonid
 family. Extremely little attention was directed at species such as the
 lampreys (four species) and sculpins (three species). Also, many species
 that have been listed on the Norwegian Red List during various time
 periods have not been given any particular attention. This lack of
 attention was also evident for most of the non-native species. The strong
 bias in research activity and lack of attention given to many species will
 clearly lead to difficulties in making appropriate management decisions.
 This is unfortunate, in particular at a time when climate change may lead
 to numerous ecosystem-level changes.
description: I used the Clarivate Web of
 Science to search for relevant publications selecting the “All databases”
 option. Further, I formulated a search query of the form: (“species name”)
 AND (Norway OR Norge) in the “all fields” search widow. The species name
 was first the valid formal Latin name, then I used searches with synonyms
 and also common names (in English). I constrained the search to only
 include articles published between 1980–2020. By including the (Norway OR
 Norge) clause in the search, papers that do not have information on either
 the species or the country in the title, abstract or keywords will be
 missed.  
description: The file is in CSV format and should be readable in many
 applications. In addition, the same file is available in .xlsx
 format.
DOI: 10.5061/dryad.b2rbnzsk3
title: Separability of human motor memories during reaching adaptation with force cues

description: Judging by the breadth of our motor repertoire during daily activities, it
 is clear that learning different tasks is a hallmark of the human motor
 system. However, for reaching adaptation to different force fields, the
 conditions under which this is possible in laboratory settings have
 remained a challenging question. Previous work has shown that independent
 movement representations or goals enabled dual adaptation. Considering the
 importance of force feedback during limb control, here we hypothesised
 that independent cues delivered by means of background loads could support
 simultaneous adaptation to various velocity-dependent force fields, for
 identical kinematic plan and movement goal. We demonstrate in a series of
 experiments that indeed healthy adults can adapt to opposite force fields,
 independently of the direction of the background force cue. However, when
 the cue and force field were in the same direction but differed by their
 magnitude, the formation of different motor representations was still
 observed but the associated mechanism was subject to increased
 interference. Finally, we highlight that this paradigm allows dissociating
 trial-by-trial adaptation from online feedback adaptation, as these two
 mechanisms are associated with different time scales that can be
 identified reliably and reproduced in a computational model. 
description: All information about data collection is provided in the original
 reference. 
description: Data structures were generated with Matlab in format *.m.
DOI: 10.5061/dryad.2jm63xsss
title: Local weather and endogenous factors affect the initiation of migration in short- and medium-distance songbird migrants

description: Migratory birds employ a variety of mechanisms to ensure appropriate
 timing of migration based on the integration of endogenous and exogenous
 information. The cues to fatten and depart from the non-breeding area are
 often linked to exogenous cues such as temperature or precipitation and
 the endogenous program. Shorter-distance migrants should rely heavily on
 environmental information when initiating migration given the relatively
 close proximity to the breeding area. However, the ability to fatten and
 subsequently depart may be linked to individual circumstances, including
 current fuel load and body size. For early and late departing migrants, we
 investigate the effects of temperature, precipitation, lean body mass,
 fuel load, and day of year on the initiation of migration (i.e., fuel load
 and departure timing) from the non-breeding region by analyzing 21 years
 of banding data for four species of short- and medium-distance migrants.
 Temperatures at the non-breeding area were related to temperatures at
 potential stopover areas. Despite local cues being predictive of
 conditions further north, the amount of variation explained by local
 weather conditions in our models differed by species and temporal period
 but was low overall (&lt; 33% variation explained). For each species,
 we also compared lean body mass and fuel load between early and late
 departing migrants, which showed mixed results. Our combined results
 suggest that most individuals migrating short or medium distances in our
 study did not time the initiation of migration with local predictive cues
 alone, but rather other factors such as lean body mass, fuel load, and day
 of year, which may be a proxy for the endogenous program, and those beyond
 the scope of our study also influenced the initiation of migration. Our
 study contributes to understanding which factors influence departure
 decisions of short- and medium-distance migrants as they transition from
 the non-breeding to the migratory phase of the annual cycle.
DOI: 10.5061/dryad.9p8cz8wkp
title: Including a spatial predictive process in band recovery models improves inference for Lincoln estimates of animal abundance

description: Abundance estimation is a critical component of conservation planning,
 particularly for exploited species where managers set regulations to
 restrict harvest based on current population size. An increasingly common
 approach for abundance estimation is through integrated population
 modeling (IPM), which uses multiple data sources in a joint likelihood to
 estimate abundance and additional demographic parameters. Lincoln
 estimators are one commonly used IPM component for harvested species,
 which combine information on the rate and the total number of individuals
 harvested within an integrated band-recovery framework to estimate
 abundance at large scales. A major assumption of the Lincoln estimator is
 that banding and recoveries are representative of the whole population,
 which may be violated if major sources of spatial heterogeneity in
 survival or harvest rates are not incorporated into the model. We
 developed an approach to account for spatial variation in harvest rates
 using a spatial predictive process, which we incorporated into a Lincoln
 estimator IPM. We simulated data under different configurations of sample
 sizes, harvest rates, and sources of spatial heterogeneity in harvest rate
 to assess potential model bias in parameter estimates.  We then
 applied the model to data collected from a field study of wild turkeys
 (Meleagris gallapavo) to estimate local and statewide abundance in Maine,
 USA. We found that the band recovery model that incorporated a spatial
 predictive process consistently provided estimates of adult and juvenile
 abundance with low bias across a variety of spatial configurations of
 harvest rate and sampling intensities. When applied to data collected on
 wild turkeys, a model that did not incorporate spatial heterogeneity
 underestimated the harvest rate in some sub-regions.  Consistent
 with simulation results, this led to over-estimation of both local and
 statewide abundance. Our work demonstrates that a spatial predictive
 process is a viable mechanism to account for spatial variation in harvest
 rates and limit bias in abundance estimates. This approach could be
 extended to large-scale band recovery datasets and has applicability for
 the estimation of population parameters in other ecological models as
 well.
description: Data was in the form of band recovery information. Turkeys were
 banded at capture locations across Maine and fit with leg bands with
 unique ID information and contact information to report harvested turkeys
 during the hunting season. Additionally, we used survival information
 collected from wild turkeys which were fit with VHF or GPS transmitters.
 Regular checks of these birds by technicians resulted in the final
 survival dataset used. 
description: Data and analysis can be reproduced in R.
DOI: 10.5061/dryad.xd2547dm7
title: The effects of changing climate on skull size in the common shrew

description: We assesed the impact of the changes in climate on the overall skull size
 (the proxy of the overall body size) and the seasonal changes of skull
 height (Dehnel’s phenomenon) in skulls of the common shrew, Sorex araneus,
 collected over 50 years in the Białowieża Forest, E Poland. Overall skull
 size decreased, along with increasing temperatures and decreasing soil
 moisture, which determined the availability of the shrews’ main food
 source, earthworms. The magnitude of Dehnel’s phenomenon increased over
 time, indicating an increasing selection pressure on animals in winter.
 Two files include the data on 1) the size of the skulls of Sorex araneus
 collected in the Białowieża Forest  between 1953 and 2004; and 2)
 the meteorological data from Białowieża, from 1952 to 2004.
description: Skull
 measurements Sorex araneus were collected
 between 1953 and 2004 in Białowieża National Park, preserved in alcohol
 and stored in the zoological collection of the Mammal Research Institute,
 Polish Academy of Sciences, in Białowieża. The skull height, length and
 width (mm) of 502 S. araneus were measured using X-ray images of the
 alcohol-preserved specimens, as described by Lázaro et al.
 (2017). Climate parameters in Białowieża between 1952
 and 2004 Mean
 temperatures (degrees Celsius), rainfall (mm), and the number of days with
 snow cover are routine measurements from the meteorological station in
 Białowieża (52.7070 N, 23.8479 E). We computed the soil
 moisture deficit from monthly temperatures and precipitation using the
 Watbug program (Willmott 1977). Lazáro, J., Dechmann, D.K.N., LaPoint, S.,
 Wikelski, M., & Hertel, M. (2017). Profound reversible seasonal
 changes of individual skull size in a mammal. Current Biology, 27, R1089-R1107.
 Willmott, C. J. (1977).
 WATBUG: a FORTRAN IV algorithm for calculating the climatic water budget.
 CW Thornthwaite Associates Laboratory of Climatology, Publications in
 Climatology, 30, 1-55.
DOI: 10.5061/dryad.5tb2rbp7b
title: Online supporting material: †Estelestes ensis (Mammalia, Metatheria) from the Early Eocene of Baja California, Mexico, as a generalized polydolopimorphian

description: In Table 1, we provide the ratio between the length of m1-4 and the height
 of the dentary below m1 in several extinct and extant metatherians from
 the Americas. We give the taxonomic assignment (Family, Order) for each of
 the measured species and indicate the source of the figure where the ratio
 was obtained. In Figure 1, we show details of the anterior portion of the
 left lower jaw of Bobbschaefferia fluminensis (MNRJ 1350-V, cast of the
 holotype) in occluso-lateral and occlusal views.
description: Word
DOI: 10.6078/d1nd9q
title: Severe inbreeding, increased mutation load, and gene loss-of-function in the critically endangered Devil’s Hole pupfish

description: Small populations with limited range are often threatened by inbreeding
 and reduced genetic diversity, which can reduce fitness and exacerbate
 population decline. One of the most extreme natural examples is the
 Devil’s Hole pupfish (Cyprinodon diabolis), an iconic and critically
 endangered species with the smallest known range of any vertebrate. This
 species has experienced severe declines in population size over the last
 thirty years and suffered major bottlenecks in 2007 and 2013, when the
 population shrunk to 38 and 35 individuals, respectively. Here we analyzed
 30 resequenced genomes of desert pupfishes from Death Valley, Ash Meadows,
 and surrounding areas to examine the genomic consequences of small
 population size. We found extremely high levels of inbreeding
 (FROH=0.34–0.81) and an increased amount of potentially deleterious
 genetic variation in the Devil’s Hole pupfish as compared to other
 species, including unique, fixed loss-of-function alleles and deletions in
 genes associated with sperm motility and hypoxia. Additionally, we
 successfully resequenced a formalin-fixed museum specimen from 1980 and
 found that the population was already highly inbred prior to recent known
 bottlenecks. We thus document severe inbreeding and increased mutation
 load in the Devil’s Hole pupfish and identify candidate deleterious
 variants to inform management of this conservation icon.
DOI: 10.5061/dryad.cfxpnvx8v
title: The gut microbiome reflects ancestry despite dietary shifts across a hybrid zone

description: The microbiome is critical to an organism’s phenotype,
 and its composition is shaped by, and a driver of,
 eco-evolutionary interactions.
 We investigated how host ancestry,
 habitat, and diet shape gut microbial composition in
 a mammalian hybrid zone that occurs
 across an ecotone between distinct vegetation
 communities. We found that habitat is the primary determinant of
 diet, while host genotype is the primary determinant of the gut
 microbiome—a finding further supported by intermediate microbiome
 composition in first generation hybrids. Despite these distinct primary
 drivers, microbial richness was correlated with diet richness, and
 individuals that maintained higher dietary richness had greater gut
 microbial community stability. Both relationships were stronger in the
 relative dietary generalist of the two parental species. Our findings show
 that host ancestry interacts with dietary habits to shape the microbiome,
 ultimately resulting in the organismal phenotypic plasticity that
 host-microbial interactions allow.
DOI: 10.5061/dryad.mpg4f4r3b
title: Changing plant species composition and richness benefit soil carbon sequestration under climate warming

description: Anthropogenic warming and land-use change are expected to accelerate
 global soil organic carbon (SOC) losses and change plant species
 composition and richness. However, how changes in plant composition and
 species richness mediate SOC responses to climate warming and land-use
 change remains poorly understood. Using data from a 7-year warming and
 clipping field experiment in an alpine meadow on the Qinghai-Tibetan
 Plateau, we examined the direct effects of warming and clipping on SOC
 storage versus their indirect effects mediated by plant functional type
 and species richness. We found that warming significantly increased SOC
 storage by 8.1% and clipping decreased it by 6.4%, which was closely
 correlated with the corresponding response of below-ground net primary
 productivity (BNPP). We also found a negative correlation between SOC
 storage and species richness, which was ascribed to the increased BNPP via
 enhancing the dominance of grasses and decreasing species richness under
 warming. The lower SOC storage under clipping was caused by the
 clipping-induced decrease in BNPP via weakening the dominance of grasses
 and increasing species richness. Our findings highlight that the SOC
 storage in this alpine meadow under climate warming and clipping was
 primarily governed by BNPP, which was mediated by changes in the dominance
 of grasses and species richness. Overall, our study demonstrates that
 shifting to the dominance of grasses and changing species richness would
 benefit soil C sequestration under climate warming, but this positive
 effect would be dampened by grazing or hay harvest.
DOI: 10.5061/dryad.8931zcrv0
title: Dataset for Xia et al.: Reproductive isolation via divergent genital morphology due to cascade reinforcement in Ohomopterus ground beetles

description: Secondary contact between incipient species and selection against
 maladaptive hybridization can drive reinforcement between populations in
 contact and result in reproductive character displacement (RCD). Resultant
 divergence in mating traits within a species may generate downstream
 reproductive isolation between populations with displaced and
 non-displaced traits, referred to as the cascade reinforcement hypothesis.
 We examined this hypothesis using three allopatric populations of the
 ground beetle Carabus maiyasanus with a genital
 lock-and-key system. This species shows RCD in male and female genital
 morphologies in populations in contact with the sister species C.
 iwawakianus. In a reciprocal mating experiment using three allopatric
 populations with differences in male and female genital sizes,
 inseminationfailure increased as the difference in genital size increased.
 Based on the reproductive isolation index, insemination failure was the
 major postmating-prezygotic isolation barrier, at least in one population
 pair with comparable total isolation to those of other species pairs. By
 contrast, there was only incomplete premating isolation among
 populations. These results suggest that RCD in genital
 morphologies drives incipient allopatric speciation, supporting the
 cascade reinforcement hypothesis. These findings provide insight into the
 roles of interspecific interactions and subsequent trait diversification
 in speciation processes.
DOI: 10.5061/dryad.jdfn2z3f0
title: Dataset for attitude measures towards Dengue control efforts with the potential of digital technology during COVID-19

description: This data contains a questionnaire and a data set of structural equation
 modeling for Attitude Towards Dengue Control Efforts with the Potential of
 Digital Technology. The variables are grouped into six namely the need for
 digital information systems, perceptions of being threatened with dengue,
 the benefits of dengue control programs, program constraints on
 environmental factors and attitudes in dengue control. Data was collected
 online using Google Forms.
description: The data is conducted using an online survey with 6 variables.
 These include perceptions of the need for digital information systems,
 dangers of DHF, benefits of DHF control programs, program constraints, and
 environ- mental factors related to attitudes toward controlling DHF.
 Respondents answered with a Likert scale of 1–5, where 1, 2 3, 4, and 5
 represent strongly disagree, disagree, neutral, agree, and strongly agree.
 The questionnaire was made by discussing with experts and testing about 30
 respondents to measure the validity and reliability. Respondents were
 selected based on inclusion criteria, aged more than 17 years, having an
 address in Denpasar City for more than one year, and willing to answer
 questions. The results of the validity and reliability tests found that 46
 of the indicators were declared valid. Invalid indicators are excluded and
 not used. The final questionnaire can be found as Extended data. It was
 then distributed online using a google form, and data collection was
 carried out in the Denpasar City area, which is endemic to DHF. Table 1
 shows a description of the data from the composites and indicators, as
 well as the definitions of attitudes towards dengue control efforts with
 the other five composites. This study was analyzed
 using PLS-SEM with SmartPLS 3.0 software. It analyzed five variables
 related to attitudes towards dengue control. The PLS-SEM analysis uses two
 stages, and the first describes the measurement model connecting the
 constructs and indicators to the theory. In the second stage, the
 structural model determines the determinants of the relationship between
 the construction and the hypothetical model.
description: The data can be opened with Microsoft Excel
 and for analysis statisctics software such SPSS, STATA,
 etc.
DOI: 10.15468/dl.zcvtd5
title: Occurrence Download

description: A dataset containing 8136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haemopis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8136 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003306-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.kh1893298
title: Interpreting the mammal deposits of Cloggs Cave (SE Australia), GunaiKurnai Aboriginal Country, through community-led partnership research

description: Palaeontological animal bone deposits are rarely investigated through
 research partnerships where the local First Nations communities have a
 defining hand in both the research questions asked and the research
 processes. Here we report research undertaken through such a partnership
 approach at the iconic archaeological site of Cloggs Cave (GunaiKurnai
 Country, East Gippsland), in the southern foothills of SE Australia’s
 Great Dividing Range. A new excavation was combined with detailed
 chronometric dating, high-resolution 3D mapping, and geomorphological
 studies. This allowed for the interpretation of a sequence of
 stratigraphic layers spanning from a lowermost excavated mixed layer dated
 to between 25,640–48,470 cal BP, to a dense set of uppermost, ash layers
 dated to between 1460–3360 cal BP. This long and well-dated
 chronostratigraphic sequence enabled temporal trends in the abundant small
 mammal remains to be examined. The fossil assemblage consists of at least
 31 taxa of mammals which change in proportions through time. Despite clear
 evidence that the Old Ancestors repeatedly carried vegetation into the
 cave to fuel cool fires (no visible vegetation grows in Cloggs Cave), we
 observed little to no evidence of cooking fires or calcined bone,
 suggesting that people had little involvement with the accumulation of the
 faunal remains. Small mammal bones were most likely deposited in the cave
 by large disc-faced owls, Tyto novaehollandae (Masked Owl) or Tyto
 tenebricosa (Sooty Owl). Despite being well-dated and largely undisturbed,
 the Cloggs Cave assemblage does not appear to track known Late Quaternary
 environmental change. Instead, the complex geomorphology of the area
 fostered a vegetation mosaic that supported mammals with divergent habitat
 preferences. The faunal deposit suggests a local ancestral landscape
 characterised by a resilient mosaic of habitats that persisted over
 thousands of years, signaling that the Old Ancestors burned landscape
 fires to encourage and manage patches of different vegetation types and
 ages within and through periods of climate change.