cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5258/soton/d0643
title: Human data supporting journal article: 'Disruptive colouration and binocular disparity: Breaking camouflage

description: Dataset relating to manuscript:Disruptive colouration and binocular disparity: Breaking camouflage
Adams, Graf & Anderson.The .zip file includes psychophysics data for all participants. There are two files for each numbered participant; one file with raw reaction time data and another with summarised data for each condition used for the ANOVA, for each of the 30 participants in the paper:The seven columns in the raw data .csv (i.e. 1.csv) correspond to different aspects of each trial; with each row containing data from one trial.The values in each cell are explicable from the heading label. For example, in the MonoStereo column, a value of 1 corresponds to Monocular presentation for that trial, 2 would indicate Stereo presentation.The Summary file for each participant combines repetitions into single values for each of the conditions used in further analysis.The dataset relates to work conducted as part of the EPSRC-funded grant EP/K005952/1
DOI: 10.7799/1476631
title: U.S. Voluntary Green Power Market Data 2017

description: This data book provides certain data behind figures and tables found in the NREL report Status and Trends in the U.S. Voluntary Green Power Market 2017 Data. These data reflect estimates based on the best available data.
DOI: 10.3886/e104880v1-8703
title: Transmission of Paternal Ex-POW Trauma

description: Data (in STATA, STATA dat files, and R) and programs (in STATA) used for "The Intergenerational Transmission of Paternal Trauma among US Civil War Ex-POWs."    The data contain death and census records of children of Union Army soldiers, together with information on their fathers and mothers. <br>
DOI: 10.5258/soton/d0639
title: Dataset for: Monitoring and repair of isolated trackbed defects on a ballasted railway

description: This dataset contains track stiffness and deflection data to accompany:Le Pen, L., Milne, D., Powrie, W., Watson, G., Thompson, D., Hayward, M., & Morley, S. (2018)
'Monitoring and repair of isolated trackbed defects on a ballasted railway', Transportation GeotechnicsPlease see read me.
DOI: 10.5258/soton/d0664
title: Experimental Data for Research: Masking a fishâ²s detection of environmental stimuli: application to improving downstream migration

description: Dataset includes raw Acoustic Doppler Velocimeter data and results of the fish trials with tracked positions.This dataset supports the publication:
Kerr, J., & Kemp, P. (2018). Masking a fish′s detection of environmental stimuli: application to improving downstream migration.
Journal of Fish Biology. DOI: 10.1111/jfb.13812
DOI: 10.25919/5bbd096797c33
title: Parkes observations for project P892 semester 2018APRS_BPSR_58

description: SUPERBx looks at the highest Galactic latitudes in a search for pulsars and fast radio bursts (FRBs). We use optimised GPU codes and supercomputing to search for these, making discoveries in real time. Handling our data as it comes in is essential for the SKA Phase I era so this work applies directly to the high-data rates of next generation telescopes. Our pulsar discoveries are typically nearby scintillating sources, intermittent sources and those in interesting binary systems. Our FRB discoveries have discovery lags of ~1 second, rather than months/years and these feed rapid alerts to the world-wide follow-up community via a dedicated VOEvent format an Astronomer's Telegrams. The goal of this is to allow localisation of the discovered FRBs. This is key for identifying FRB host galaxies, so as to solve the mystery of their progenitors and to exploit their many uses as tools for precision cosmology measurements.
DOI: 10.17861/ab6d5f14-ee8f-4be1-94c7-3c9fd0eea37a
title: NMR data supporting the publication of: On the reactivity of N-tert-butyl-1,2-diaminoethane: Synthesis of 1-tert-butyl-2-imidazoline, formation of an intramolecular carbamate salt from the reaction with CO2 and generation of a hydroxyalkyl-substituted imidazolinium salt

description: Zipped folder containing NMR files in JCAMP format (1D data) or ACD format (2D data)
DOI: 10.5061/dryad.2bs69.2/1.2
title: Program to analyze E. coli cell lengths from DIC images

description: DIC cell length detection code developed in MATLAB and released into the Open Source community. This code is suited for all elongated cell types and has been optimized for the purposes of analyzing E. coli cells. All the data analyzed in the related manuscript for cell-lengths has been generated using this program.
DOI: 10.17632/btb6s33sxp.1
title: Data for: Magnetic ordering in the nano-laminar ternary Mn2AlB2 using neutron and X - ray diffraction

description: The following data contains the measured and Rietvelt refined results of the room temperature powder X-ray diffraction and neutron powder diffraction of Mn2Al11B2. The data is divided into 2 folders: XRD and NPD for the X-ray diffraction data and neutron diffraction data, respectively. The NPD data is split into different folders labeled by the temperature, at which the measurement was made. Each folder contains the raw data (.dat) file, the refinement control file used in the FULLPROF program (.pcr), and the files outputted after the refinement process (.out, .sum, .cif, .mcif).
DOI: 10.17632/pnkcjryfp9.1
title: Protection against the lethal side effects of social immunity in ants. Pull et al

description: All data arising from "Protection against the lethal side effects of social immunity in ants" by Pull et al
DOI: 10.25919/5bbc32430adb4
title: Parkes observations for project PX501 semester 2018APRS_07

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries.  As the observing time has been purchased this proposal (and the related PX500) does not require TAC grading.  The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first (PX500) will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period.  The second type of time (relating to this proposal) will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.21227/x54z-z548
title: Large-scale Genetic Exploration of Genome-wide Models: an Application to Human Cancer Metabolism

description: Computational modelling of metabolic processes has proven to be a useful approach to formulate our knowledge and improve our understanding of core biochemical systems that are crucial to maintain cellular functions. Recently, it has become evident that metabolism is not only responsible for generating the required energy and controlling the abundance of metabolites within a cell, but also has an important role in and influence on cellular fate specification. Toward understanding the broader role of metabolism on cellular decision-making in healthy and disease conditions, it is important to integrate the study of metabolism with other core regulatory systems within the cell, including gene regulatory networks that control gene expression patterns.  However, the sheer size of human metabolism models makes large-scale integration and discovery difficult to perform extensively. After quantitatively integrating gene expression profiles with a genome-scale reconstruction of human metabolism, we propose combinatorial methods to reverse engineer gene expression profiles and combinations of genetic modifications that simultaneously optimize multi-objective cellular goals. This enables us to suggest classes of transcriptomic profiles that are most suitable to achieve given metabolic phenotypes. As a result, we can express objectives on the phenotypes and characterize genotypes able to reach the set objectives. We demonstrate how our techniques are able to compute beneficial, neutral or ``toxic'' combinations of gene expression levels. We test our method on a manually curated improved version of the human metabolic reconstruction (Recon 2), and on nine cell-specific cancer models, comparing our outcomes with the corresponding normal cells.  When applied to cancer models, toxic genes become simultaneous targets for potential therapies.  Our methods enable large scale studies of metabolic reconstructions coupled to gene expression models, and open the way to a broad class of applications that require understanding of the interplay among genotype, metabolism, and cellular behavior. The code is freely available as a MATLAB toolbox.
DOI: 10.21227/yegx-4z80
title: Large-scale Genetic Exploration of Genome-wide Models: an Application to Human Cancer Metabolism

description: Computational modelling of metabolic processes has proven to be a useful approach to formulate our knowledge and improve our understanding of core biochemical systems that are crucial to maintain cellular functions. Recently, it has become evident that metabolism is not only responsible for generating the required energy and controlling the abundance of metabolites within a cell, but also has an important role in and influence on cellular fate specification. Toward understanding the broader role of metabolism on cellular decision-making in healthy and disease conditions, it is important to integrate the study of metabolism with other core regulatory systems within the cell, including gene regulatory networks that control gene expression patterns.  However, the sheer size of human metabolism models makes large-scale integration and discovery difficult to perform extensively. After quantitatively integrating gene expression profiles with a genome-scale reconstruction of human metabolism, we propose combinatorial methods to reverse engineer gene expression profiles and combinations of genetic modifications that simultaneously optimize multi-objective cellular goals. This enables us to suggest classes of transcriptomic profiles that are most suitable to achieve given metabolic phenotypes. As a result, we can express objectives on the phenotypes and characterize genotypes able to reach the set objectives. We demonstrate how our techniques are able to compute beneficial, neutral or ``toxic'' combinations of gene expression levels. We test our method on a manually curated improved version of the human metabolic reconstruction (Recon 2), and on nine cell-specific cancer models, comparing our outcomes with the corresponding normal cells.  When applied to cancer models, toxic genes become simultaneous targets for potential therapies.  Our methods enable large scale studies of metabolic reconstructions coupled to gene expression models, and open the way to a broad class of applications that require understanding of the interplay among genotype, metabolism, and cellular behavior. The code is freely available as a MATLAB toolbox.
DOI: 10.21227/jn60-6546
title: IEEE Brain Data Bank Competition at the IEEE Big Data Conference

description: The IEEE Brain Initiative partnered with the 3rd IEEE Big Data Governance and Metadata Management Workshop to host Hackathon Track #2, Brain Data Bank on Video Gaming Enhances Cognitive Skills. The BDGMM Workshop is held in conjunction with IEEE Big Data 2018.
DOI: 10.25919/5bbc33b9310d3
title: Parkes observations for project PX500 semester 2018APRS_07

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries.  As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading.  The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period.  The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.5281/zenodo.1455729
title: Florent-Leclercq/Borg_Sdss_Data_Release V1.0

description: Public release of data products following the BORG SDSS analysis
description: {"references": ["Jasche et al. 2015, arXiv:1409.6308", "Leclercq et al. 2015a, arXiv:1410.0355", "Leclercq et al. 2015b, arXiv:1502.02690", "Leclercq et al. 2015c, arXiv:1503.00730", "Leclercq et al. 2016, arXiv:1606.06758", "Leclercq et al. 2017, arXiv:1601.00093"]}
DOI: 10.17632/5k2y9k32fm.1
title: Data for: SMOOTH: Self-Management Open Online Trials in Health An Analysis of Existing Online Trials

description: Appendix-1 ORCHID search strategy Appendix-2 Glossary Appendix 3 Table of included and Excluded studies Self-Management Open Online Trials in Health (SMOOTH) What can we learn from existing trials? BACKGROUND The use of online clinical trials is growing, but there remains little practical guidance on their conduct and it is sometimes challenging for researchers to adapt the conventions used in face-to-face trials and maintain the validity of the work. Online trials of self-management may indicate how an intervention will be used in daily practice as the online environment can mirror the self-management of care increasingly expected. The Online Randomized Controlled Trials of Health Information Database (ORCHID) contains health trials undertaken using the internet which were systematically sought and cataloged. This ORCHID analysis provides insight into the current state of online clinical trials. AIM To systematically explore existing self-recruited online randomized trials of self-management interventions and analyze the trials to assess their strengths and weaknesses, the quality of reporting and the involvement of participants in the research process. METHODS ORCHID was used as a sampling frame to identify a subset of self-recruited looking at self-management interventions. These were appraised to explore the qualities of self-recruited online randomized trials and to evaluate the usefulness of online trials for obtaining trustworthy answers to questions about health self-management and citizen research involvement. RESULTS The sample included (n=41) online trials published from 2002-2015. Trial quality was critically appraised as High (n=9), Medium-high (n=15), Medium (n=17), and low as (n=1). Descriptive settings in (N=23/41) trials provided insufficient information to be replicable and did not report piloting or testing platforms before the trial launch. Reporting of patient and public involvement was more common than in face-to-face trials, however reporting, replicability, and methods used in online randomized trials of self-recruited self-management interventions were sub-optimal and dissemination strategies were sparse and reported in only (n=1) trial. CONCLUSIONS The information gained in this study catalogs the state of online trials of self-management in the early 21st century and provides insights for online trials development as early as the protocol planning stage.
DOI: 10.25919/5bbc349a702d6
title: Parkes observations for project PX501 semester 2018APRS_06

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries.  As the observing time has been purchased this proposal (and the related PX500) does not require TAC grading.  The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first (PX500) will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period.  The second type of time (relating to this proposal) will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.3886/e106543v1
title: Joireman High Court

description: This data set consists of archival records collected from the Shoa High Court in Ethiopian in order to better understand the country's tenure system as well as the "position and intentions of the Ethiopian imperial government" (Joireman 2000, 11). "This data set is problematic, however, as by 1967 the jurisdiction of the court had changed from being a court of appeal for the country as a whole to a court of appeal for Shoa alone. Thus the data are not consistent across time. However, for most of the cases we have a complete summary of the dispute, which is a valuable record" (Joireman 2000, 15).
description: N/A
description: Response Rates: N/A
description: Presence of Common Scales: N/A
description: other~~
description: All Shoa High Court cases from the years 1947, 1957, 1967 and 1974 (according to the Gregorian calendar). Smallest Geographic Unit: Ethiopia and Eritrea
description: "A standard random sampling of every twenty-fifth case was collected of all of the Shoa High Court cases from 1947, 1957, 1967 and 1974. A total of 412 cases were collected" (Joireman 2000, 15). Note: The Ethiopian calendar is distinct from the Gregorian calendar, which is utilized in the United States. Thus, the years noted above represent the sample years according to the Gregorian calendar. The calendar utilized for the data collection, however, was the Ethiopian calendar. Thus, the sample was taken from the years 1939, 1949, 1959, and 1966 according to the Ethiopian calendar and these are the years that appear on the data submitted.
DOI: 10.5281/zenodo.1453459
title: Analysis Results For Association Study Of Long-Term Kidney Transplant Rejection Using Whole-Exome Sequencing

description: Association study results for long-term kidney transplant rejection. Single-variant association results are provided as Plink output files. Meta-analysis results are provided as METAL output files. FDR results are sorted lists of the top association result from random sample label permutations and are included with the plink and meta-analysis results. SKAT and GSEA results are provided for gene and pathway level analyses, respectively.
DOI: 10.5281/zenodo.1453460
title: Analysis Results For Association Study Of Long-Term Kidney Transplant Rejection Using Whole-Exome Sequencing

description: Association study results for long-term kidney transplant rejection. Single-variant association results are provided as Plink output files. Meta-analysis results are provided as METAL output files. FDR results are sorted lists of the top association result from random sample label permutations and are included with the plink and meta-analysis results. SKAT and GSEA results are provided for gene and pathway level analyses, respectively.
DOI: 10.5281/zenodo.1455730
title: Florent-Leclercq/Borg_Sdss_Data_Release V1.0

description: Public release of data products following the BORG SDSS analysis
description: {"references": ["Jasche et al. 2015, arXiv:1409.6308", "Leclercq et al. 2015a, arXiv:1410.0355", "Leclercq et al. 2015b, arXiv:1502.02690", "Leclercq et al. 2015c, arXiv:1503.00730", "Leclercq et al. 2016, arXiv:1606.06758", "Leclercq et al. 2017, arXiv:1601.00093"]}
DOI: 10.25919/5bbc381842324
title: Parkes observations for project P965 semester 2018APRS_01

description: The deployment of the new ultra-wide-band receiver UWL enables a plethora of experiments which were previously not possible or very difficult. One immediate benefit for pulsar timing studies is the significantly increased ratio of available radio frequency bandwidth to the decorrelation bandwidth as induced by the ionised interstellar medium (ISM). PSR J1933-6211 is a strongly-scintillating millisecond pulsar. Due to its scintillation, previous studies failed to measure the mass and orbital parameters of this system and instead provided limits. With the UWL we expect more reliable detection of bright scintles during every observation; and hence improved and reliable timing precision that will allow a mass measurement through Shapiro-Delay detection. As an additional benefit, we can use the broad band to adequately study the scintillation properties of this pulsar and thereby constrain its orbital inclination. 
    The mass of the pulsar is potentially the lowest known, depending on the type of its white dwarf companion. By measuring it we will also determine the type of the white dwarf which is interesting in its own right and is one of the coolest such objects known (Antoniadis, priv. comm.). Finally, we will verify if, as we expect, the precision attainable with the increased bandwidth is sufficient for high-precision pulsar timing and inclusion of PSR J1933-6211 in pulsar timing array experiments.
DOI: 10.25919/5bbc38fa7b090
title: Parkes observations for project P970 semester 2018APRS_03

description: During the past 6 years, we at Parkes and collaborators at other radio telescopes have been remarkably successful at discovering millisecond pulsars (MSPs) associated with unidentified Fermi-LAT gamma-ray sources. Based on lessons learned, we here propose to carry out targeted searches with the new Ultra-wideband Low (UWL) receiver that will be installed next semester. The ultra-wide frequency coverage will enable us to detect MSPs with steep spectrum and avoid difficulties caused by interstellar scintillation and dispersive and scattering smearing. We propose to revisit highly ranked pulsar candidates that remain unidentified. Such a pilot survey will help us designing future searches of the coming 4FGL gamma-ray source catalog using the UWL. The overall time request is 23 hours on source, or 26 hours including overheads.
DOI: 10.26300/7asw-k867
title: Supplementary data files from "Meta-analysis of genetic modifiers reveals candidate dysregulated pathways in Amyotrophic Lateral Sclerosis"
DOI: 10.7910/dvn/a4agsw/1gxgpj
title: cpsnx.dat
DOI: 10.7910/dvn/a4agsw/62xohw
title: arcaba.txt
DOI: 10.7910/dvn/a4agsw/g3vxp3
title: oadsect2.txt
DOI: 10.7910/dvn/a4agsw/pcntjj
title: expunti.dat
DOI: 10.7910/dvn/a4agsw/ridvmn
title: cpsny.dat
DOI: 10.7910/dvn/a4agsw/sljrur
title: expunti.dat
DOI: 10.7910/dvn/a4agsw/wd0nra
title: cgdxy.dat
DOI: 10.7910/dvn/a4agsw/xuknca
title: cgsnx.dat
DOI: 10.7910/dvn/a4agsw/zk4l6l
title: cgdxx.dat
DOI: 10.15142/t34p9w
title: Collaborative Research: The interplay between host diet, immunity, reproduction, and the microbiome across an anthropogenic-disturbed landscape
DOI: 10.7910/dvn/a4agsw/0tdu92
title: oadsecto.txt
DOI: 10.7910/dvn/a4agsw/1q82sc
title: cgsny.dat
DOI: 10.7910/dvn/a4agsw/cdgebm
title: istruzioni3.txt
DOI: 10.7910/dvn/a4agsw/dkfxlr
title: cgsny.dat
DOI: 10.7910/dvn/a4agsw/k1k1lw
title: cgdxx.dat
DOI: 10.7910/dvn/a4agsw/oa8ezt
title: cpdxx.dat
DOI: 10.7910/dvn/a4agsw/sntqzd
title: cgsny.dat
DOI: 10.7910/dvn/a4agsw/z3kdjq
title: arcang.txt
DOI: 10.7910/dvn/a4agsw/zqt5gp
title: oaditext.txt
DOI: 10.21421/d2/j3nd48
title: Identified foliar fungal disease-resistant introgression lines with higher pod and haulm yield testing of Groundnut in MABC Post rainy 2013-14
DOI: 10.25919/5bbc3d9487cd4
title: Parkes observations for project P957 semester 2017OCTS_01

description: Pulse times of arrival are the key to any pulsar timing experiment, but the inferences we make depend critically on removing the effects of the interstellar medium.  High-precision pulsar timing is reaching the limits of our ISM models and residuals effects may limit future goals, like the detection of gravitational waves.  NICER, the newly-installed X-ray observatory on the International Space Station, provides the first opportunity to perform high-precision timing  with X-rays, free from ISM effects.  Radio telescopes still offer much greater precision, but NICER will allow us to carefully analyze ISM effects on a few pulsars.  NICER will make weekly observations of PSR J1824-2452A, and we propose a high-cadence Parkes campaign to obtain contemporaneous radio TOAs.  Since we know the "answer" from X-rays, we'll be able to test our ISM models and apply the results to all pulsar timing efforts.