cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9978311.v1
title: Laufer et al. 2019

description: Original Data of the Manuscript "Chemokine receptor CCR7 triggers an endomembrane signaling complex for spatial Rac activation"
DOI: 10.21223/72u7nb/9kdja3
title: elevation.csv

description: :unav
DOI: 10.21223/72u7nb/ddh06t
title: geographic_origin_accessions.csv

description: :unav
DOI: 10.6084/m9.figshare.9977528.v1
title: NBCI submitted annotations

description: Submitted NCBI gene annotation files
DOI: 10.6084/m9.figshare.9977495
title: 737_Registered_Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.21223/72u7nb/oayljx
title: harvest_canopy_traits_mean_across_rep.csv

description: :unav
DOI: 10.6084/m9.figshare.9977495.v1
title: 737_Registered_Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.21223/72u7nb/rb6kmh
title: harvest_traits_mean_across_rep.csv

description: :unav
DOI: 10.6084/m9.figshare.9977438
title: 725_Registered_Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.6084/m9.figshare.9977429
title: 746 Registered Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.21223/72u7nb/dmvfmk
title: Meteorol_data Piura.xlsb.tab

description: :unav
DOI: 10.6084/m9.figshare.9977426
title: Metadata record for: Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015

description: This dataset contains key characteristics about the data described in the Data Descriptor Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9977429.v1
title: 746 Registered Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.6084/m9.figshare.9977438.v1
title: 725_Registered_Images

description: All modalities were aligned to IMS data on a per pixel basis, by linking of the theoretical pixel location in each image to the laser ablation marks made by the IMS laser in a raster across the tissue. Both single-section multi-image, and multi-section multi-image workflows were used in registration16. Images were exported as high-resolution jpeg, tiff, mha, or png files. All images were registered to a pixel map, or theoretical grid, generated from a coordinate extraction from flex imaging, using a padding of 10 to add area to the images around the edges (Supplemental Fig. 6, Supplemental Table 4). We used external fiducial marks (rectangular regions external to the tissue) to reduce inaccuracy that could be introduced in determination of the exact center of the ablation mark for alignment to the theoretical pixel map of tissue at high spatial resolution (Supplemental Table 4). These fiducial benchmarks were acquired at half the spatial resolution and were used to enable high accuracy alignment with the center of the theoretical pixel map obtained from the spot list map. Laser ablation sites post-acquisition as well as external fiducial marks were recorded in the FITC channel. Masks in FIJI were used to increase accuracy of registration 43, and image figures were created using FIJI, using its pre-programmed macros.
DOI: 10.21223/72u7nb/htdb4f
title: morph_data_biostat2.csv

description: :unav
DOI: 10.6084/m9.figshare.9977411
title: 12-Step Alternative - DOI.sav

description: These data represent the results of a study that evaluating the 12-step vs. 12-step alternative language preferences for millennial and generation Z participants in relation to their religious preferences.
DOI: 10.21223/72u7nb/kqdhpl
title: Data dictionary_swp_heat stress screening.xlsx

description: :unav
DOI: 10.6084/m9.figshare.9977411.v1
title: 12-Step Alternative - DOI.sav

description: These data represent the results of a study that evaluating the 12-step vs. 12-step alternative language preferences for millennial and generation Z participants in relation to their religious preferences.
DOI: 10.6084/m9.figshare.9977426.v2
title: Metadata record for: Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015

description: This dataset contains key characteristics about the data described in the Data Descriptor Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.21223/72u7nb/ow2yxp
title: Data dictionary_swp_heat stress screening.xlsx

description: :unav
DOI: 10.6084/m9.figshare.9977426.v1
title: Metadata record for: Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015

description: This dataset contains key characteristics about the data described in the Data Descriptor Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK, 1970 – 2015. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.21223/72u7nb
title: Dataset for: Mass screening of sweetpotato germplasm for heat tolerance

description: This dataset presents the results of a screening for heat stress tolerance of 1973 sweetpotato accessions under field conditions in the coastal desert of Northern Peru (Piura). The experiment was laid out as an alpha lattice design with two replications in two consecutive seasons (2013-2014) characterized by hot and moderate temperatures representing a heat stress and a non-heat stress treatment. Yield performance metrics such as storage root yield, vine yield, total biomass yield, number of marketable roots, harvest index, dry matter content and normalized difference vegetation index (NDVI) were recorded at harvest at 120 days after planting. The dataset includes selected morhological descriptors and passportdata elements (elevation of germplasm collecting site, country of origin) originating from the database of CIP genebank . The original datasets of the screened accessions can be found at http://genebank.cipotato.org/gringlobal/search.aspx or https://www.genesys-pgr.org/. Climatic data were recorded (air temperature, air humidity, precipitation, solar radiation, and wind speed) every hour with a HOBObase weather station U30 4.0 (Onset Computer Corporation, MA, USA).
DOI: 10.6084/m9.figshare.9977390
title: Table S1 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: Radon data (i.e., activity concentration) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.17028/rd.lboro.9977378
title: Artificially Engineered Capacitors for Discrete High Frequency Electronic Circuitry - Data set

description: Measurement and simulation data presented in the paper titled 'Artificially Engineered Capacitors for Discrete High Frequency Electronic Circuitry'.
DOI: 10.6084/m9.figshare.9977384
title: Table S3 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: X-ray powder diffraction (XRPD) data (i.e., 2-theta vs. intensity) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.6084/m9.figshare.9977387
title: Table S2 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: Rock sample petrophysical properties (i.e., porosity and acoustic wave velocity) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.6084/m9.figshare.9977390.v1
title: Table S1 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: Radon data (i.e., activity concentration) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.6084/m9.figshare.9977384.v1
title: Table S3 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: X-ray powder diffraction (XRPD) data (i.e., 2-theta vs. intensity) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.6084/m9.figshare.9977387.v1
title: Table S2 from Transient to stationary radon (<sup>220</sup>Rn) emissions from a phonolitic rock exposed to subvolcanic temperatures

description: Rock sample petrophysical properties (i.e., porosity and acoustic wave velocity) from thermal experiments conducted at subvolcanic temperatures from 100 to 900 °C
DOI: 10.17028/rd.lboro.9977378.v1
title: Artificially Engineered Capacitors for Discrete High Frequency Electronic Circuitry - Data set

description: Measurement and simulation data presented in the paper titled 'Artificially Engineered Capacitors for Discrete High Frequency Electronic Circuitry'.
DOI: 10.6084/m9.figshare.9977261
title: Opioid-related respiratory and gastrointestinal adverse events in patients with acute postoperative pain: prevalence, predictors, and burden

description: Opioid-induced respiratory depression (OIRD) and postoperative nausea and vomiting (PONV) are challenging, resource-intensive, and costly opioid-related adverse events (ORAEs). Utilizing the Premier Healthcare Database, we identified patients &gt; 18 years old, who underwent at least one surgical procedure of interest (i.e., cardiothoracic/vascular, general/colorectal, obstetric/gynecologic, orthopedic, or urologic), and received at least one dose of intravenous morphine, hydromorphone, or fentanyl for acute postoperative pain. The incidence of OIRD and PONV using ICD-9 codes, factors influencing these AEs, length of stay (LOS) and related costs were analyzed. Among 592,127 inpatient stays, rates of respiratory depression ranged from 3% (obstetric/gynecologic) to 17% (cardiothoracic/vascular) and nausea/vomiting from 44% (obstetric/gynecologic) to 72% (general/colorectal). Increased odds of OIRD were associated with older age (cardiothoracic/vascular, general/colorectal, obstetric/gynecologic); obesity, respiratory conditions, and sleep apnea (all surgery groups); opioid dose (cardiothoracic/vascular, general/colorectal, orthopedic); and sedative use after day 1. Increased odds of PONV were associated with younger age, female sex, and major disease severity. When respiratory depression or nausea/vomiting was present versus absent, LOS was significantly longer, and hospital costs were higher. In this analysis, OIRD and PONV were more prevalent than previously reported, were associated with identifiable risk factors, and had substantial effects on resource utilization and costs.
DOI: 10.6084/m9.figshare.9977258
title: AIDGFP_SheepRedBloodCell_Immunized_spleen_746_4

description: Negative ion mode IMS data were acquired with a 9.4T Bruker FT-ICR Solarix mass spectrometer (Bruker Daltonics, Billerica, MA, USA) equipped with a 2 kHz Nd: YAG (wavelength: 355nm) laser and an Infinity ion cyclotron resonance (ICR) cell. Laser power was optimized for each sample by adjusting in the range of 18-20%. Data were collected in negative ion mode from <i>m/z</i> 200-2,000 with a raster step of 30 µm and a data size of 1 MB per spectrum with a free induction decay (FID) length of 0.8389 s. Each pixel consisted of 500 laser shots with the minimum laser energy focus setting (~10 µm) at a frequency of 2000 Hz, and a smart walk of 25 µm was enabled to increase sensitivity. The mass-selecting quadrupole was set to <i>m/z</i> 350 and TOF of 0.8 ms. The resolving power of all imaging experiments was ~80,000 at <i>m/z</i> 766.54. External calibration was performed prior to analysis and internal lock-mass calibration was performed using <i>m/z</i> 885.5494 ([PI(18:0_20:4)-H]<sup>-</sup>) during image acquisition.
DOI: 10.6084/m9.figshare.9977261.v2
title: Opioid-related respiratory and gastrointestinal adverse events in patients with acute postoperative pain: prevalence, predictors, and burden

description: Opioid-induced respiratory depression (OIRD) and postoperative nausea and vomiting (PONV) are challenging, resource-intensive, and costly opioid-related adverse events (ORAEs). Utilizing the Premier Healthcare Database, we identified patients &gt; 18 years old, who underwent at least one surgical procedure of interest (i.e., cardiothoracic/vascular, general/colorectal, obstetric/gynecologic, orthopedic, or urologic), and received at least one dose of intravenous morphine, hydromorphone, or fentanyl for acute postoperative pain. The incidence of OIRD and PONV using ICD-9 codes, factors influencing these AEs, length of stay (LOS) and related costs were analyzed. Among 592,127 inpatient stays, rates of respiratory depression ranged from 3% (obstetric/gynecologic) to 17% (cardiothoracic/vascular) and nausea/vomiting from 44% (obstetric/gynecologic) to 72% (general/colorectal). Increased odds of OIRD were associated with older age (cardiothoracic/vascular, general/colorectal, obstetric/gynecologic); obesity, respiratory conditions, and sleep apnea (all surgery groups); opioid dose (cardiothoracic/vascular, general/colorectal, orthopedic); and sedative use after day 1. Increased odds of PONV were associated with younger age, female sex, and major disease severity. When respiratory depression or nausea/vomiting was present versus absent, LOS was significantly longer, and hospital costs were higher. In this analysis, OIRD and PONV were more prevalent than previously reported, were associated with identifiable risk factors, and had substantial effects on resource utilization and costs.
DOI: 10.6084/m9.figshare.9977258.v1
title: AIDGFP_SheepRedBloodCell_Immunized_spleen_746_4

description: Negative ion mode IMS data were acquired with a 9.4T Bruker FT-ICR Solarix mass spectrometer (Bruker Daltonics, Billerica, MA, USA) equipped with a 2 kHz Nd: YAG (wavelength: 355nm) laser and an Infinity ion cyclotron resonance (ICR) cell. Laser power was optimized for each sample by adjusting in the range of 18-20%. Data were collected in negative ion mode from <i>m/z</i> 200-2,000 with a raster step of 30 µm and a data size of 1 MB per spectrum with a free induction decay (FID) length of 0.8389 s. Each pixel consisted of 500 laser shots with the minimum laser energy focus setting (~10 µm) at a frequency of 2000 Hz, and a smart walk of 25 µm was enabled to increase sensitivity. The mass-selecting quadrupole was set to <i>m/z</i> 350 and TOF of 0.8 ms. The resolving power of all imaging experiments was ~80,000 at <i>m/z</i> 766.54. External calibration was performed prior to analysis and internal lock-mass calibration was performed using <i>m/z</i> 885.5494 ([PI(18:0_20:4)-H]<sup>-</sup>) during image acquisition.
DOI: 10.6084/m9.figshare.9976991
title: SheepRedBloodCell_Immunized_spleen_746_1

description: Negative ion mode IMS data were acquired with a 9.4T Bruker FT-ICR Solarix mass spectrometer (Bruker Daltonics, Billerica, MA, USA) equipped with a 2 kHz Nd: YAG (wavelength: 355nm) laser and an Infinity ion cyclotron resonance (ICR) cell. Laser power was optimized for each sample by adjusting in the range of 18-20%. Data were collected in negative ion mode from <i>m/z</i> 200-2,000 with a raster step of 30 µm and a data size of 1 MB per spectrum with a free induction decay (FID) length of 0.8389 s. Each pixel consisted of 500 laser shots with the minimum laser energy focus setting (~10 µm) at a frequency of 2000 Hz, and a smart walk of 25 µm was enabled to increase sensitivity. The mass-selecting quadrupole was set to <i>m/z</i> 350 and TOF of 0.8 ms. The resolving power of all imaging experiments was ~80,000 at <i>m/z</i> 766.54. External calibration was performed prior to analysis and internal lock-mass calibration was performed using <i>m/z</i> 885.5494 ([PI(18:0_20:4)-H]<sup>-</sup>) during image acquisition.
DOI: 10.6084/m9.figshare.9977000
title: AIDGFP_NonImmunized_spleen_746_3

description: Negative ion mode IMS data were acquired with a 9.4T Bruker FT-ICR Solarix mass spectrometer (Bruker Daltonics, Billerica, MA, USA) equipped with a 2 kHz Nd: YAG (wavelength: 355nm) laser and an Infinity ion cyclotron resonance (ICR) cell. Laser power was optimized for each sample by adjusting in the range of 18-20%. Data were collected in negative ion mode from <i>m/z</i> 200-2,000 with a raster step of 30 µm and a data size of 1 MB per spectrum with a free induction decay (FID) length of 0.8389 s. Each pixel consisted of 500 laser shots with the minimum laser energy focus setting (~10 µm) at a frequency of 2000 Hz, and a smart walk of 25 µm was enabled to increase sensitivity. The mass-selecting quadrupole was set to <i>m/z</i> 350 and TOF of 0.8 ms. The resolving power of all imaging experiments was ~80,000 at <i>m/z</i> 766.54. External calibration was performed prior to analysis and internal lock-mass calibration was performed using <i>m/z</i> 885.5494 ([PI(18:0_20:4)-H]<sup>-</sup>) during image acquisition.