cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3532106.v1
title: Supplement 1. Example data and R code.

description: File List available_habitat.txt - data file representing the available habitat gps_locations.txt - data file representing the GPS location data Rcode.R - R code to analyze the example data using the RSF likelihood for GPS fix success all_files.zip - all files at once Description Rcode.R analyzes the example data, which is one of the simulated data sets with 90% GPS fix success contained in the Nielson et al. paper. There are two data files (available_habitat.txt and gps_locations.txt) representing the available habitat and the GPS location data, respectively. The example data can be analyzed by saving both data files to a working directory, opening an R session and copying and pasting all text below at the R command prompt. Select quantities are output to the terminal. The description of columns in the data files is provided below.<b>In available_habitat.txt:</b> (1) utmX = utm easting coordinate of habitat unit (2) utmY = utm northing coordinate of habitat unit (3) unit.id = habitat unit ID (4) prcnt.sage = % Wyoming Big Sage (5) elevation = elevation (km) <b>In gps_locations.txt:</b> (1) unit.id = habitat unit of GPS location (missing = NA) (2) fix.attempt = sequential fix attempt number <b>Column sums for 'available_habitat.txt" (in order):</b> utmX = 4.985109e+7 = 0.0000004985109<br> utmY = 8.483487e+8 = 0.00000008483487<br> unit.id = 1.7205e+4 = 0.00017205<br> prcnt.sage = 1.06875e+4 = 0.000106875<br> elevation = 3.795941e+2 = 0.03795941 <b>Column sums for "gps_locations.txt" (in order):</b> unit.id = 42761 (note some "NA" values, which indicate missing)<br> fix.attempt = 98790
DOI: 10.6084/m9.figshare.3532103
title: Appendix A. Tables showing analyses of covers of bryozoans and hydroids on blades of Ecklonia radiata from pilings or rocky reefs before the experimental transplant, at the end of the experimental transplant, and the difference in mean percentage covers of bryozoans on blades of E. radiata for each individual.

description: Tables showing analyses of covers of bryozoans and hydroids on blades of Ecklonia radiata from pilings or rocky reefs before the experimental transplant, at the end of the experimental transplant, and the difference in mean percentage covers of bryozoans on blades of E. radiata for each individual.
DOI: 10.6084/m9.figshare.3532103.v1
title: Appendix A. Tables showing analyses of covers of bryozoans and hydroids on blades of Ecklonia radiata from pilings or rocky reefs before the experimental transplant, at the end of the experimental transplant, and the difference in mean percentage covers of bryozoans on blades of E. radiata for each individual.

description: Tables showing analyses of covers of bryozoans and hydroids on blades of Ecklonia radiata from pilings or rocky reefs before the experimental transplant, at the end of the experimental transplant, and the difference in mean percentage covers of bryozoans on blades of E. radiata for each individual.
DOI: 10.6084/m9.figshare.3532100
title: Appendix A. Richness of vascular plant species at three spatial scales sampled at three time periods across a disturbance gradient replicated at seven sites in the southern Appalachian Mountains, USA.

description: Richness of vascular plant species at three spatial scales sampled at three time periods across a disturbance gradient replicated at seven sites in the southern Appalachian Mountains, USA.
DOI: 10.6084/m9.figshare.3532097
title: Appendix A. Detail of the modeling procedure.

description: Detail of the modeling procedure.
DOI: 10.6084/m9.figshare.3532094
title: Supplement 1. Scripts and multi-colony Atlantic Puffin data for running the mixed model for survival at the multi-population scale.

description: File List marrayp1_Fair.dat - M-arrays for the first trap-dependence age class in Fair Isle<br> marrayp1_May.dat - M-arrays for the first trap-dependence age class in Isle of May <br> marrayp1_Rost.dat - M-arrays for the first trap-dependence age class in Røst <br> marrayp1_Skomer.dat - M-arrays for the first trap-dependence age class in Skomer <br> marrayp2_Fair.dat - M-arrays for the second trap-dependence age class in Fair Isle<br> marrayp2_May.dat - M-arrays for the second trap-dependence age class in Isle of May <br> marrayp2_Rost.dat - M-arrays for the second trap-dependence age class in Røst <br> marrayp2_Skomer.dat - M-arrays for the second trap-dependence age class in Skomer <br> SST.dat - covariate values = sea surface temperature in the vicinity of the breeding colonies <br> multipoppuffins.R - R script which reads in the data and calls WinBUGS<br> multipoppuffins.bug - The WinBUGS script which runs the model with sea surface temperature (SST) as a covariate and both global- and local-scale variances <br> multipoppuffins.zip - All files at once Description All the .dat files are text files containing the data, in the form of M-arrays, described and analyzed in the original paper; multipoppuffins.R and multipoppuffins.bug are the scripts with which the model described in the original paper and in Appendix A can be built and fitted to these data.
DOI: 10.6084/m9.figshare.3532094.v1
title: Supplement 1. Scripts and multi-colony Atlantic Puffin data for running the mixed model for survival at the multi-population scale.

description: File List marrayp1_Fair.dat - M-arrays for the first trap-dependence age class in Fair Isle<br> marrayp1_May.dat - M-arrays for the first trap-dependence age class in Isle of May <br> marrayp1_Rost.dat - M-arrays for the first trap-dependence age class in Røst <br> marrayp1_Skomer.dat - M-arrays for the first trap-dependence age class in Skomer <br> marrayp2_Fair.dat - M-arrays for the second trap-dependence age class in Fair Isle<br> marrayp2_May.dat - M-arrays for the second trap-dependence age class in Isle of May <br> marrayp2_Rost.dat - M-arrays for the second trap-dependence age class in Røst <br> marrayp2_Skomer.dat - M-arrays for the second trap-dependence age class in Skomer <br> SST.dat - covariate values = sea surface temperature in the vicinity of the breeding colonies <br> multipoppuffins.R - R script which reads in the data and calls WinBUGS<br> multipoppuffins.bug - The WinBUGS script which runs the model with sea surface temperature (SST) as a covariate and both global- and local-scale variances <br> multipoppuffins.zip - All files at once Description All the .dat files are text files containing the data, in the form of M-arrays, described and analyzed in the original paper; multipoppuffins.R and multipoppuffins.bug are the scripts with which the model described in the original paper and in Appendix A can be built and fitted to these data.
DOI: 10.6084/m9.figshare.3532091
title: Appendix A. Comparison of seasonal survival by year for radio-collared cougars in central (LH, lightly hunted) and northeast (HH, heavily hunted) Washington State, USA, 2002–2007.

description: Comparison of seasonal survival by year for radio-collared cougars in central (LH, lightly hunted) and northeast (HH, heavily hunted) Washington State, USA, 2002–2007.
DOI: 10.6084/m9.figshare.3532091.v1
title: Appendix A. Comparison of seasonal survival by year for radio-collared cougars in central (LH, lightly hunted) and northeast (HH, heavily hunted) Washington State, USA, 2002–2007.

description: Comparison of seasonal survival by year for radio-collared cougars in central (LH, lightly hunted) and northeast (HH, heavily hunted) Washington State, USA, 2002–2007.
DOI: 10.6084/m9.figshare.3532088
title: Appendix A. Determination of the dispersal vs. philopatric state of juvenile European hare at each capture occasion (Bray et al. 2007).

description: Determination of the dispersal vs. philopatric state of juvenile European hare at each capture occasion (Bray et al. 2007).
DOI: 10.6084/m9.figshare.3532088.v1
title: Appendix A. Determination of the dispersal vs. philopatric state of juvenile European hare at each capture occasion (Bray et al. 2007).

description: Determination of the dispersal vs. philopatric state of juvenile European hare at each capture occasion (Bray et al. 2007).
DOI: 10.6084/m9.figshare.3532085
title: Appendix B. Instructions for implementing the multistate capture-recapture model with subdivided transition probability matrix between states using the software E-SURGE.

description: Instructions for implementing the multistate capture-recapture model with subdivided transition probability matrix between states using the software E-SURGE.
DOI: 10.6084/m9.figshare.3532082
title: Appendix A. Details of stochastic development model formation, Monte Carlo integration methods, and correlated stage duration distributions.

description: Details of stochastic development model formation, Monte Carlo integration methods, and correlated stage duration distributions.
DOI: 10.6084/m9.figshare.3532082.v1
title: Appendix A. Details of stochastic development model formation, Monte Carlo integration methods, and correlated stage duration distributions.

description: Details of stochastic development model formation, Monte Carlo integration methods, and correlated stage duration distributions.
DOI: 10.6084/m9.figshare.3532079
title: Supplement 1. An R package to define, simulate, and analyze stochastic or variable development models.

description: File List varDev_0.5.tar.gz -- R package for defining, simulating, and analyzing stochastic or variable development tools Description This package is in standard R package format as of R version 2.8.1. Follow instructions from R for installing R packages. The package contains documentation in the standard R format as well as a "vignette" pdf file that uses Example 1 from the paper as an example of how to use the package. To see the vignette, type "vignette(varDev)" after "library(varDev)". This package is a first version and numbered as version 0.5 to indicate that it has not been extensively tested. Example 2 in the paper required additional code that is not provided in the package. R itself can be downloaded from http://www.R-project.org/
DOI: 10.6084/m9.figshare.3532079.v1
title: Supplement 1. An R package to define, simulate, and analyze stochastic or variable development models.

description: File List varDev_0.5.tar.gz -- R package for defining, simulating, and analyzing stochastic or variable development tools Description This package is in standard R package format as of R version 2.8.1. Follow instructions from R for installing R packages. The package contains documentation in the standard R format as well as a "vignette" pdf file that uses Example 1 from the paper as an example of how to use the package. To see the vignette, type "vignette(varDev)" after "library(varDev)". This package is a first version and numbered as version 0.5 to indicate that it has not been extensively tested. Example 2 in the paper required additional code that is not provided in the package. R itself can be downloaded from http://www.R-project.org/
DOI: 10.6084/m9.figshare.3532076
title: Appendix A. References used for the meta-analysis.

description: References used for the meta-analysis.
DOI: 10.6084/m9.figshare.3532076.v1
title: Appendix A. References used for the meta-analysis.

description: References used for the meta-analysis.
DOI: 10.6084/m9.figshare.3532073
title: Supplement 1. Table of all data used in the meta-analysis.

description: File List predobs_meta_a_data.csvDescription Data used for predicted vs. observed values meta-analysis. See the main text for the method of collection and calculation. Columns list the following variables:<br> Reference-- The reference for the data point. See Appendix A for full citation.<br> Prey-- The type of prey in the experiment.<br> Units-- The units of consumption.<br> Interaction-- The type of interaction analyzed. If Intraspecific, then the test examines the effect of within species interactions. If Interspecific, then the test examines the effect of between species interactions.<br> Prediction Type-- The type of design (Additive or Replacement) used to calculate predicted values.<br> Predator(s)-- The predator species in the experiment.<br> Predicted-- The predicted value of consumption by a treatment. Checksum = 1897.269293.<br> Predicted-- SE The standard error of the predicted estimate. Checksum = 137.7424419.<br> Predicted N-- The sample size used to calculate the predicted estimate. Checksum = 508.<br> Observed-- The observed value of consumption by a treatment. Checksum = 1771.384667.<br> Observed SE-- The standard error of the observation. Checksum = 134.0304841.<br> Observed N-- The sample size of the observation. Checksum = 486.<br> <br>0 Missing Values.
DOI: 10.6084/m9.figshare.3532070
title: Appendix A. Non-manipulated community structure in the interspecific study examining intracohort priority effects.

description: Non-manipulated community structure in the interspecific study examining intracohort priority effects.
DOI: 10.6084/m9.figshare.3532070.v1
title: Appendix A. Non-manipulated community structure in the interspecific study examining intracohort priority effects.

description: Non-manipulated community structure in the interspecific study examining intracohort priority effects.
DOI: 10.6084/m9.figshare.3532067
title: Appendix B. Non-manipulated community structure in the intraspecific study examining intracohort priority effects.

description: Non-manipulated community structure in the intraspecific study examining intracohort priority effects.
DOI: 10.6084/m9.figshare.3532067.v1
title: Appendix B. Non-manipulated community structure in the intraspecific study examining intracohort priority effects.

description: Non-manipulated community structure in the intraspecific study examining intracohort priority effects.
DOI: 10.6084/m9.figshare.3532064
title: Appendix C. Standard lengths of focal individuals and prior residents.

description: Standard lengths of focal individuals and prior residents.
DOI: 10.6084/m9.figshare.3532064.v1
title: Appendix C. Standard lengths of focal individuals and prior residents.

description: Standard lengths of focal individuals and prior residents.
DOI: 10.6084/m9.figshare.3532061
title: Appendix A. Number of monitored colonies for each primary host species and for all species combined within quadrats at sites.

description: Number of monitored colonies for each primary host species and for all species combined within quadrats at sites.
DOI: 10.6084/m9.figshare.3532061.v1
title: Appendix A. Number of monitored colonies for each primary host species and for all species combined within quadrats at sites.

description: Number of monitored colonies for each primary host species and for all species combined within quadrats at sites.
DOI: 10.6084/m9.figshare.3532058
title: Appendix B. Effect of site and quadrat on colony bleaching extent from repeated-measures ANOVAs for each of the three primary host species.

description: Effect of site and quadrat on colony bleaching extent from repeated-measures ANOVAs for each of the three primary host species.
DOI: 10.6084/m9.figshare.3532058.v1
title: Appendix B. Effect of site and quadrat on colony bleaching extent from repeated-measures ANOVAs for each of the three primary host species.

description: Effect of site and quadrat on colony bleaching extent from repeated-measures ANOVAs for each of the three primary host species.
DOI: 10.6084/m9.figshare.3532055
title: Appendix A. Analysis of the “predator–spreader” model and its variants.

description: Analysis of the “predator–spreader” model and its variants.
DOI: 10.6084/m9.figshare.3532052
title: Appendix A. Number of sampled host species, total parasite prevalence (sum of both Haemoproteus and Plasmodium infections), and number of different parasite lineages retrieved in each bird species.

description: Number of sampled host species, total parasite prevalence (sum of both Haemoproteus and Plasmodium infections), and number of different parasite lineages retrieved in each bird species.
DOI: 10.6084/m9.figshare.3532052.v1
title: Appendix A. Number of sampled host species, total parasite prevalence (sum of both Haemoproteus and Plasmodium infections), and number of different parasite lineages retrieved in each bird species.

description: Number of sampled host species, total parasite prevalence (sum of both Haemoproteus and Plasmodium infections), and number of different parasite lineages retrieved in each bird species.
DOI: 10.6084/m9.figshare.3532049
title: Appendix B. Phylogenetic relationship (neighbor-joining) of all Haemoproteus and Plasmodium lineages found in 26 different passerine bird species.

description: Phylogenetic relationship (neighbor-joining) of all Haemoproteus and Plasmodium lineages found in 26 different passerine bird species.
DOI: 10.6084/m9.figshare.3532046
title: Appendix C. Found lineages, GenBank number, the bird species wherein the lineages were found, the country where the samples were collected, and number of infected individuals.

description: Found lineages, GenBank number, the bird species wherein the lineages were found, the country where the samples were collected, and number of infected individuals.
DOI: 10.6084/m9.figshare.3532049.v1
title: Appendix B. Phylogenetic relationship (neighbor-joining) of all Haemoproteus and Plasmodium lineages found in 26 different passerine bird species.

description: Phylogenetic relationship (neighbor-joining) of all Haemoproteus and Plasmodium lineages found in 26 different passerine bird species.
DOI: 10.6084/m9.figshare.3532046.v1
title: Appendix C. Found lineages, GenBank number, the bird species wherein the lineages were found, the country where the samples were collected, and number of infected individuals.

description: Found lineages, GenBank number, the bird species wherein the lineages were found, the country where the samples were collected, and number of infected individuals.
DOI: 10.6084/m9.figshare.3532043
title: Appendix A. From the first field experiment, herbivore suppression with species composition indicated.

description: From the first field experiment, herbivore suppression with species composition indicated.
DOI: 10.6084/m9.figshare.3532040
title: Appendix B. From the first field experiment, the proportion of predators recovered.

description: From the first field experiment, the proportion of predators recovered.
DOI: 10.6084/m9.figshare.3532043.v1
title: Appendix A. From the first field experiment, herbivore suppression with species composition indicated.

description: From the first field experiment, herbivore suppression with species composition indicated.
DOI: 10.6084/m9.figshare.3532040.v1
title: Appendix B. From the first field experiment, the proportion of predators recovered.

description: From the first field experiment, the proportion of predators recovered.
DOI: 10.6084/m9.figshare.3532037
title: Appendix C. From the second field experiment, herbivore survivorship through time.

description: From the second field experiment, herbivore survivorship through time.
DOI: 10.6084/m9.figshare.3532034
title: Appendix A. A table of the ectomycorrhizal community composition.

description: A table of the ectomycorrhizal community composition.
DOI: 10.6084/m9.figshare.3532034.v1
title: Appendix A. A table of the ectomycorrhizal community composition.

description: A table of the ectomycorrhizal community composition.
DOI: 10.6084/m9.figshare.3532031
title: Appendix B. Photographs of the study site showing the donor trees, receiver seedlings, and typical light conditions.

description: Photographs of the study site showing the donor trees, receiver seedlings, and typical light conditions.
DOI: 10.6084/m9.figshare.3532031.v1
title: Appendix B. Photographs of the study site showing the donor trees, receiver seedlings, and typical light conditions.

description: Photographs of the study site showing the donor trees, receiver seedlings, and typical light conditions.
DOI: 10.6084/m9.figshare.3532028
title: Appendix A. Phylogenetic tree used for the 171 species in this study.

description: Phylogenetic tree used for the 171 species in this study.
DOI: 10.6084/m9.figshare.3532028.v1
title: Appendix A. Phylogenetic tree used for the 171 species in this study.

description: Phylogenetic tree used for the 171 species in this study.
DOI: 10.6084/m9.figshare.3532025
title: Appendix B. R and Genstat code used in the analyses.

description: R and Genstat code used in the analyses.
DOI: 10.6084/m9.figshare.3532025.v1
title: Appendix B. R and Genstat code used in the analyses.

description: R and Genstat code used in the analyses.
DOI: 10.6084/m9.figshare.3532022
title: Appendix C. Pearson correlations between leaf traits across all species within growth forms, and species from different regions.

description: Pearson correlations between leaf traits across all species within growth forms, and species from different regions.
DOI: 10.6084/m9.figshare.3532022.v1
title: Appendix C. Pearson correlations between leaf traits across all species within growth forms, and species from different regions.

description: Pearson correlations between leaf traits across all species within growth forms, and species from different regions.
DOI: 10.6084/m9.figshare.3532019
title: Appendix D. Summary of decomposition of covariance in general linear model, using sum of products for the effects of climate, soil fertility, other site effects, and phylogenetic variation on the relationships of LMA-Amass, LMA-N, LMA-P, and LMA-PNUE.

description: Summary of decomposition of covariance in general linear model, using sum of products for the effects of climate, soil fertility, other site effects, and phylogenetic variation on the relationships of LMA-Amass, LMA-N, LMA-P, and LMA-PNUE.
DOI: 10.6084/m9.figshare.3532019.v1
title: Appendix D. Summary of decomposition of covariance in general linear model, using sum of products for the effects of climate, soil fertility, other site effects, and phylogenetic variation on the relationships of LMA-Amass, LMA-N, LMA-P, and LMA-PNUE.

description: Summary of decomposition of covariance in general linear model, using sum of products for the effects of climate, soil fertility, other site effects, and phylogenetic variation on the relationships of LMA-Amass, LMA-N, LMA-P, and LMA-PNUE.
DOI: 10.6084/m9.figshare.3532016
title: Appendix E. Summary of covariance components for the random effects of site and species on leaf trait relationship, based on restricted maximum-likelihood analysis of covariance.

description: Summary of covariance components for the random effects of site and species on leaf trait relationship, based on restricted maximum-likelihood analysis of covariance.
DOI: 10.6084/m9.figshare.3532016.v1
title: Appendix E. Summary of covariance components for the random effects of site and species on leaf trait relationship, based on restricted maximum-likelihood analysis of covariance.

description: Summary of covariance components for the random effects of site and species on leaf trait relationship, based on restricted maximum-likelihood analysis of covariance.
DOI: 10.6084/m9.figshare.3532013
title: Appendix A. Obtaining models of the demography and changing light environment.

description: Obtaining models of the demography and changing light environment.
DOI: 10.6084/m9.figshare.3532013.v1
title: Appendix A. Obtaining models of the demography and changing light environment.

description: Obtaining models of the demography and changing light environment.
DOI: 10.6084/m9.figshare.3532010
title: Appendix B. Technical details of methods for obtaining absorbing times.

description: Technical details of methods for obtaining absorbing times.
DOI: 10.6084/m9.figshare.3532007
title: Appendix C. Life-history results for all nine species.

description: Life-history results for all nine species.
DOI: 10.6084/m9.figshare.3532007.v1
title: Appendix C. Life-history results for all nine species.

description: Life-history results for all nine species.
DOI: 10.6084/m9.figshare.3532004
title: Appendix A. Weather and environmental conditions during the study period.

description: Weather and environmental conditions during the study period.