cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8370638
title: Drop count and size of 38 numerical simulation of a flat fan spray

description: Data refer to the drop size distribution used in the paper "Data-driven modelling for drop size distributions" by T. Traverso, T. Abadie, O. K. Matar, and L. Magri (arXiv link: https://arxiv.org/abs/2305.18049) Each of the 38 .csv file in this folder is associated with a different working condition of the nozzle. Specifically, the name 'alpha##_Re##_We##.csv' contains the working condition of the nozzle as - alpha## (## is the spray angle) - Re## (## is the Reynolds number) - We## (## is the Weber number) Each file contains as many raws as the number of drops. In the i-th raw, 1) the first element is the Volume of the i-th drop; 2) the second element is the estimated surface of the i-th drop with the method in equation (18) of [1]; 3) the third element is the equivalent diameter of the i-th drop (i.e., as if it was spherical - computed from the volume) The value of the Weber number found in the Arxiv paper is half of that reported here. The correct one is the one in this database. The paper will be corrected in due time.
description: {"references": ["Traverso, T., Abadie, T., Matar, O. K., & Magri, L. (2023). Data-driven modelling for drop size distributions. arXiv preprint arXiv:2305.18049."]}
DOI: 10.7298/7txw-2681
title: Surveillance Benefit Components for Chronic Wasting Disease in White-Tailed Deer
DOI: 10.5519/qd.8csa4y19
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35 records)
DOI: 10.6084/m9.figshare.24183921
title: Sequencing data of DNA repair substrate plasmid by TMEJ

description: <b>TMEJ assay in nuclear extracts</b>.The assay was performed as described by Dutta et al. (Dutta et al., 2017) with modifications. Briefly, exponentially growing U2OS cells transiently expressing POLQ-Flag-HA in 60 mm plates (90% confluent) were irradiated with X-rays (10Gy). After indicated time points of incubation, the irradiated and control cells were harvested for preparation of nuclear extracts. 100ng I-<i>Sce</i>I digested pBabehygro-EGFP-MMEJ (Truong et al., 2013), the repair substrate, mixed with 100μl nuclear extracts 30 min with gentle shaking at 30<sup>o</sup>C followed by incubation at 15 h at 16<sup>o</sup>C. 10μl of mixture were used to XL10- gold ultracompetent E. coli (Agilent Technologies) following the manufacturer’s protocol. The colonies in each agar plate were counted and submitted for PCR + sequence analysis of the product using the PCR primers: 5′-ACGGGGTCATTAGTTCATAGCCCA-3′, and 5′-GGGATTTTGCCGATTTCGGCC-3′; and the sequencing primer: 5'-ATGGTGAGCAAGGGCGAGGAG-3' (Genewiz Inc.).
DOI: 10.6084/m9.figshare.24183921.v1
title: Sequencing data of DNA repair substrate plasmid by TMEJ

description: <b>TMEJ assay in nuclear extracts</b>.The assay was performed as described by Dutta et al. (Dutta et al., 2017) with modifications. Briefly, exponentially growing U2OS cells transiently expressing POLQ-Flag-HA in 60 mm plates (90% confluent) were irradiated with X-rays (10Gy). After indicated time points of incubation, the irradiated and control cells were harvested for preparation of nuclear extracts. 100ng I-<i>Sce</i>I digested pBabehygro-EGFP-MMEJ (Truong et al., 2013), the repair substrate, mixed with 100μl nuclear extracts 30 min with gentle shaking at 30<sup>o</sup>C followed by incubation at 15 h at 16<sup>o</sup>C. 10μl of mixture were used to XL10- gold ultracompetent E. coli (Agilent Technologies) following the manufacturer’s protocol. The colonies in each agar plate were counted and submitted for PCR + sequence analysis of the product using the PCR primers: 5′-ACGGGGTCATTAGTTCATAGCCCA-3′, and 5′-GGGATTTTGCCGATTTCGGCC-3′; and the sequencing primer: 5'-ATGGTGAGCAAGGGCGAGGAG-3' (Genewiz Inc.).
DOI: 10.3886/e193989v1
title: The Health-Driven Safety and Security for Older Adults with Partial Activity of Daily Living (ADL-2) who Live Independently

description: This research and development study aimed to examine health safety and security situations, establish an advancement model, and evaluate the outcomes associated with health-driven safety and security for partial activities of daily living (ADL-2) in older adults who live independently. Participants included 377 older adults in the two settings using cluster random sampling and 15 experts who worked in various community settings in Lampang Province, Thailand, between April to August 2023. The developed model included the Older Adult Safety and Security Questionnaires (OA-SQs) and the framework of health-driven safety and security. It was evaluated in the pre-post longitudinal study and, qualitative focus group discussions to gather feedback on the developed model. The developed model consisted of 1) analyzing the situation context, 2) developing a model and framework, 3) utilizing a developed model, and 4) evaluating model effectiveness. Before and after using the model for sixth months, the average overall health safety and security of the participants after the experiment was higher than before was statistically significant at the level of .05 and 95% confidence intervals. Knowledge of living security was at an average level. Older adults desire to continually develop self-care knowledge to be independent and maintain their current health conditions. Healthcare providers, along with government agencies, local communities, and private organizations, prioritize health and safety measures for older adults living independently to improve their quality of life
DOI: 10.5281/zenodo.8370704
title: RMT repository test data

description: This data set contains all of the test data which was previously housed in the R-matrix with time-dependence (RMT) repository at https://gitlab.com/Uk-amor/RMT/rmt. There are four separate directories: atomic_big, atomic_small and molecular_tests contain sample inputs and outputs for rmt calculations. field_tests contains inputs and outputs for the field_check utility. Each test calculation contains an inputs and rmt_output directory. Calculations were performed with RMT compiled with the gnu compiler running on the ARCHER2 supercomputer.
DOI: 10.5281/zenodo.8370703
title: RMT repository test data

description: This data set contains all of the test data which was previously housed in the R-matrix with time-dependence (RMT) repository at https://gitlab.com/Uk-amor/RMT/rmt. There are four separate directories: atomic_big, atomic_small and molecular_tests contain sample inputs and outputs for rmt calculations. field_tests contains inputs and outputs for the field_check utility. Each test calculation contains an inputs and rmt_output directory. Calculations were performed with RMT compiled with the gnu compiler running on the ARCHER2 supercomputer.
DOI: 10.34740/kaggle/ds/3766052
title: Yandex Music TOP 100 songs🎵
DOI: 10.14286/a4boa7
title: West River, Sheet Harbour, Brook Trout

description: This is the OBIS extraction of the Ocean Tracking Network and Ocean Tracking Network (OTN) West River, Sheet Harbour, Brook Trout, consisting of the release tagging metadata, i.e. the location and date when the tagged animal was released, and summarized detection events of tagged individuals. If readers are interested in the source dataset they may also inquire with the project PIs as listed here or on the OTN web site (https://members.oceantrack.org/project?ccode=ABC).
description: Abstract:This project examined the estuarine migration, behaviour, habitat use and general ecology of brook charr while in estuarine and coastal habitats. This was a two year project (2009 & 2010) and ran concurrent to the West River Sheet Harbour Atlantic Salmon smolt tracking project (WRS).
DOI: 10.6084/m9.figshare.24183849.v1
title: Dataset S1

description: An emerging area of interest is how virulent viruses impact the assembly, structure, and function of commensal bacterial populations in the human gut. Synthetic microbiomes offer a powerful way to study these interactions <i>in vitro</i>, however, a major challenge is obtaining a representative bacteriophage population during the isolation process. Here, we demonstrate that standard colony isolation procedures reliably exclude virulent viruses from synthetic microbiomes. When the virulent virome was reintroduced to a 73-strain synthetic microbiome and cocultured in a bioreactor model of the human colon, we found that phage predation had a targeted effect on susceptible strains, but little overall impact on community structure and metabolism. Overall, the findings indicate that dilution-based isolation methods are prone to generating synthetic microbiomes heavily depleted, if not devoid, of virulent viruses, and that those viruses, if reintroduced, impact community assembly, metabolism, and prophage induction.
DOI: 10.6084/m9.figshare.22353862
title: DATASET: Radiation-grafted anion-exchange membranes for CO<sub>2</sub> electroreduction cells: an unexpected effect of using a lower excess of <i>N</i>-methylpiperidine in their fabrication

description: Raw data in support of select figures in the article. These are organised in individual .zip files per Figure, containing a variety of supporting file types, mostly Microsoft Excel.
DOI: 10.6084/m9.figshare.22353862.v1
title: DATASET: Radiation-grafted anion-exchange membranes for CO<sub>2</sub> electroreduction cells: an unexpected effect of using a lower excess of <i>N</i>-methylpiperidine in their fabrication

description: Raw data in support of select figures in the article. These are organised in individual .zip files per Figure, containing a variety of supporting file types.
DOI: 10.5522/04/24107193
title: Data files for the paper "Mouse frontal cortex nonlinearly encodes sensory, choice and outcome signals"

description: Contains raw and processed calcium fluorescence traces for cells recorded with 2-photon microscopy from mice performing a choice task. <br> Frontal area MOs (secondary motor area) is a key brain structure in rodents for making decisions based on sensory evidence and on reward value. In behavioral tasks, its neurons can encode sensory stimuli, upcoming choices, expected rewards, ongoing actions, and recent outcomes. However, the information encoded, and the nature of the resulting code, may depend on the task being performed. We recorded MOs population activity using two-photon calcium imaging, in a task requiring mice to integrate sensory evidence with reward value. Mice turned a wheel to report the location of a visual stimulus following a delay period, to receive a reward whose size varied over trial blocks. MOs neurons encoded multiple task variables, but not all of those seen in other tasks. In the delay period, the MOs population strongly encoded the stimulus side but did not significantly encode the reward-size block. A correlation of MOs activity with upcoming choice could be explained by a common effect of stimulus on those two correlates. After the wheel turn and the feedback, the MOs population encoded choice side and choice outcome jointly and nonlinearly according to an exclusive-or (XOR) operation. This nonlinear operation would allow a downstream linear decoder to infer the correct choice side (i.e., the side that would have been rewarded) even on zero contrast trials, when there had been no visible stimulus. These results indicate that MOs neurons flexibly encode some but not all variables that determine behavior, depending on task. Moreover, they reveal that MOs activity can reflect a nonlinear combination of these behavioral variables, allowing simple linear inference of task events that would not have been directly observable. <br>
DOI: 10.5522/04/24107193.v1
title: Data files for the paper "Mouse frontal cortex nonlinearly encodes sensory, choice and outcome signals"

description: Contains raw and processed calcium fluorescence traces for cells recorded with 2-photon microscopy from mice performing a choice task. <br> Frontal area MOs (secondary motor area) is a key brain structure in rodents for making decisions based on sensory evidence and on reward value. In behavioral tasks, its neurons can encode sensory stimuli, upcoming choices, expected rewards, ongoing actions, and recent outcomes. However, the information encoded, and the nature of the resulting code, may depend on the task being performed. We recorded MOs population activity using two-photon calcium imaging, in a task requiring mice to integrate sensory evidence with reward value. Mice turned a wheel to report the location of a visual stimulus following a delay period, to receive a reward whose size varied over trial blocks. MOs neurons encoded multiple task variables, but not all of those seen in other tasks. In the delay period, the MOs population strongly encoded the stimulus side but did not significantly encode the reward-size block. A correlation of MOs activity with upcoming choice could be explained by a common effect of stimulus on those two correlates. After the wheel turn and the feedback, the MOs population encoded choice side and choice outcome jointly and nonlinearly according to an exclusive-or (XOR) operation. This nonlinear operation would allow a downstream linear decoder to infer the correct choice side (i.e., the side that would have been rewarded) even on zero contrast trials, when there had been no visible stimulus. These results indicate that MOs neurons flexibly encode some but not all variables that determine behavior, depending on task. Moreover, they reveal that MOs activity can reflect a nonlinear combination of these behavioral variables, allowing simple linear inference of task events that would not have been directly observable. <br>
DOI: 10.5522/04/24107193.v2
title: Data files for the paper "Mouse frontal cortex nonlinearly encodes sensory, choice and outcome signals"

description: Contains raw and processed calcium fluorescence traces for cells recorded with 2-photon microscopy from mice performing a choice task. <br> Frontal area MOs (secondary motor area) is a key brain structure in rodents for making decisions based on sensory evidence and on reward value. In behavioral tasks, its neurons can encode sensory stimuli, upcoming choices, expected rewards, ongoing actions, and recent outcomes. However, the information encoded, and the nature of the resulting code, may depend on the task being performed. We recorded MOs population activity using two-photon calcium imaging, in a task requiring mice to integrate sensory evidence with reward value. Mice turned a wheel to report the location of a visual stimulus following a delay period, to receive a reward whose size varied over trial blocks. MOs neurons encoded multiple task variables, but not all of those seen in other tasks. In the delay period, the MOs population strongly encoded the stimulus side but did not significantly encode the reward-size block. A correlation of MOs activity with upcoming choice could be explained by a common effect of stimulus on those two correlates. After the wheel turn and the feedback, the MOs population encoded choice side and choice outcome jointly and nonlinearly according to an exclusive-or (XOR) operation. This nonlinear operation would allow a downstream linear decoder to infer the correct choice side (i.e., the side that would have been rewarded) even on zero contrast trials, when there had been no visible stimulus. These results indicate that MOs neurons flexibly encode some but not all variables that determine behavior, depending on task. Moreover, they reveal that MOs activity can reflect a nonlinear combination of these behavioral variables, allowing simple linear inference of task events that would not have been directly observable. <br>
DOI: 10.5281/zenodo.8370566
title: TunSwitch: Code-Switched Tunisian Arabic Speech Dataset

description: This folder contains the data used to develop and test the Tunisian Arabic Automatic Speech Recognition model developed in the following paper : A. A. Ben Abdallah*, A. Kabboudi, A. Kanoun, and S. Zaiem*, “Leveraging data collection and unsupervised learning for code-switched tunisian arabic automatic speech recognition”, Submitted to ICASSP 2024, vol. * : These two authors have contributed equally. 2023. <br> It contains 4 zipped folders containing audio data :<br> - TunSwitchCS.zip : containing annotated code-switched data.<br> - TunSwitchTO.zip : containing annotated Tunisian-Only data.<br> - weakly_labeled_tn.zip : containing weakly-labeled (or unlabeled) audio data. Audios may contain code-switching, but the current weak labels do not.<br> - test_wavs.zip : contains annotated testing data, divided between a code-switched part and a tunisian-only part. <br> It also contains textual data, used for language modelling, contained in TextData.zip. Finally it also contains a language-detailed annotation of TunSwitchCS in the language_annotation.zip file . More details about the data are available in the paper. The current table are in a SpeechBrain-friendly format, the column path is irrelevant and has to be changed according to your local setting. Please use the provided train-dev-test splits if you work with this dataset. Please cite the aforementioned paper if you use or refer to this dataset. You can find models trained and tested on this dataset Here. Space demos are also available. If you use or refer to this dataset, please cite : ``` @misc{abdallah2023leveraging,<br> title={Leveraging Data Collection and Unsupervised Learning for Code-switched Tunisian Arabic Automatic Speech Recognition}, <br> author={Ahmed Amine Ben Abdallah and Ata Kabboudi and Amir Kanoun and Salah Zaiem},<br> year={2023},<br> eprint={2309.11327},<br> archivePrefix={arXiv},<br> primaryClass={eess.AS}<br> } ``` <br>
DOI: 10.5281/zenodo.8370565
title: TunSwitch: Code-Switched Tunisian Arabic Speech Dataset

description: This folder contains the data used to develop and test the Tunisian Arabic Automatic Speech Recognition model developed in the following paper : A. A. Ben Abdallah*, A. Kabboudi, A. Kanoun, and S. Zaiem*, “Leveraging data collection and unsupervised learning for code-switched tunisian arabic automatic speech recognition”, Submitted to ICASSP 2024, vol. * : These two authors have contributed equally. 2023. <br> It contains 4 zipped folders containing audio data :<br> - TunSwitchCS.zip : containing annotated code-switched data.<br> - TunSwitchTO.zip : containing annotated Tunisian-Only data.<br> - weakly_labeled_tn.zip : containing weakly-labeled (or unlabeled) audio data. Audios may contain code-switching, but the current weak labels do not.<br> - test_wavs.zip : contains annotated testing data, divided between a code-switched part and a tunisian-only part. <br> It also contains textual data, used for language modelling, contained in TextData.zip. Finally it also contains a language-detailed annotation of TunSwitchCS in the language_annotation.zip file . More details about the data are available in the paper. The current table are in a SpeechBrain-friendly format, the column path is irrelevant and has to be changed according to your local setting. Please use the provided train-dev-test splits if you work with this dataset. Please cite the aforementioned paper if you use or refer to this dataset. You can find models trained and tested on this dataset Here. Space demos are also available. If you use or refer to this dataset, please cite : ``` @misc{abdallah2023leveraging,<br> title={Leveraging Data Collection and Unsupervised Learning for Code-switched Tunisian Arabic Automatic Speech Recognition}, <br> author={Ahmed Amine Ben Abdallah and Ata Kabboudi and Amir Kanoun and Salah Zaiem},<br> year={2023},<br> eprint={2309.11327},<br> archivePrefix={arXiv},<br> primaryClass={eess.AS}<br> } ``` <br>
DOI: 10.5281/zenodo.8277360
title: Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems - Supplementary Datasets

description: These datasets comprise the supplementary datasets found in Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems, <strong><em>Geochimica et Cosmiochimica Act </em></strong>
DOI: 10.5281/zenodo.8277359
title: Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems - Supplementary Datasets

description: These datasets comprise the supplementary datasets found in Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems, <strong><em>Geochimica et Cosmiochimica Act </em></strong>
DOI: 10.6084/m9.figshare.23807328
title: De-identified_dataset_hemidiaphragm

description: De-identified dataset including examination of the right hemidiaphragm using M-mode ultrasonography during tidal breathing and loaded breathing while lifting the weight with the left or right hand.
DOI: 10.6084/m9.figshare.23807328.v3
title: De-identified_dataset_hemidiaphragm

description: De-identified dataset including examination of the right hemidiaphragm using M-mode ultrasonography during tidal breathing and loaded breathing while lifting the weight with the left or right hand.
DOI: 10.6084/m9.figshare.23551911
title: 15 Nwestbladi. Ultrafiltration excretory system. Fasta file

description: Fasta file containing the genes involved in the development of the ultrafiltration excretory system from Acoelomorpha and other phyla.
DOI: 10.6084/m9.figshare.23551911.v1
title: 15 Nwestbladi. Ultrafiltration excretory system. Fasta file

description: Fasta file containing the genes involved in the development of the ultrafiltration excretory system from Acoelomorpha and other phyla.
DOI: 10.6084/m9.figshare.23551938
title: 22 Nwestbladi. Details of repeat content. Illumina

description: Repeat content annotated in the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23551938.v1
title: 22 Nwestbladi. Details of repeat content. Illumina

description: Repeat content annotated in the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23551935
title: 21 Nwestbladi. Annotation file. GTF. Illumina genome

description: Annotation (in format GTF) of the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23551935.v1
title: 21 Nwestbladi. Annotation file. GTF. Illumina genome

description: Annotation (in format GTF) of the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23551941
title: 23 Nwestbladi. BUSCO completeness report. Metazoa. Illumina

description: Results of the BUSCO analysis over the genome of Nemertoderma westbladi sequenced with Illumina. The database was Metazoa_odb10
DOI: 10.6084/m9.figshare.23551944
title: 24 Nwestbladi. BUSCO completeness report. Eukaryota. Illumina

description: Results of the BUSCO analysis from the genome of Nemertoderma westbladi sequenced with Illumina. The database was Eukaryota_odb10
DOI: 10.6084/m9.figshare.23551953
title: 25 Nwestbladi. PFAM annotation. Illumina

description: Functional annotation of the genome of Nemertoderma westbladi sequenced with Illumina. All annotated gene models were annotated with the PFAM database.
DOI: 10.6084/m9.figshare.23551914
title: 14 Nwestbladi. Analysis of gene content evolution. Orthogroups

description: Orthogroups annotated among 18 animal genomes, including three acoelomorphs, eight protostomes, four deuterostomes, and there cnidarians.
DOI: 10.6084/m9.figshare.23551914.v1
title: 14 Nwestbladi. Analysis of gene content evolution. Orthogroups

description: Orthogroups annotated among 18 animal genomes, including three acoelomorphs, eight protostomes, four deuterostomes, and there cnidarians.
DOI: 10.6084/m9.figshare.23551917
title: 13 Nwestbladi. PFAM annotation. HiFi

description: Functional annotation of the genome of Nemertoderma westbladi sequenced with HiFi. All annotated gene models were annotated with the PFAM database.