cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4738237
title: Haplotype analysis of the polymorphic 24 Y-STR markers in six ethnic populations from China

description: Twenty-four Y-STR loci were analysed in 1446 males from the following six Chinese ethnic populations: Guangxi Han (<i>n</i>=600), Gin (<i>n</i>=161), Maonan (<i>n</i>=135), Miao (<i>n</i>=186), Zhuang (<i>n</i>=226) and Yao (<i>n</i>=138) using the AGCU Y24 STR amplification kit. The lowest estimates of genetic diversity (below 0.5) correspond to markers DYS391 (0.4006), DYS438 (0.4300), and DS388 (0.4907), and the greatest diversity corresponds to markers DYS385a/b (0.9636) and DYS527a/b (0.9439). Moreover, there were 1331 different haplotypes identified from the 1446 total samples, of which 1233 were unique. Notably, we observed shared haplotypes between the four ethnic populations (Maonan, Miao, Zhuang, Yao ethnic population), except between the Guangxi Han and Gin population. The estimated overall haplotype diversity (HD) was 0.9997. A multidimensional scaling (MDS) plot based on the genetic distances between populations demonstrates the genetic similarity of the Maonan, Miao and Zhuang populations with genetic distance below 3.0. No substructure correction is required to estimate the rarity of a haplotype comprising 24 markers. In summary, the results of our study indicate that the 24 Y-STRs have a high level of polymorphism in these six Chinese ethnic populations and could therefore be a powerful tool for forensic applications and population genetic studies.
DOI: 10.6084/m9.figshare.19418311.v1
title: Additional file 9 of Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture

description: Additional file 8. ASV and taxonomy table.
DOI: 10.6084/m9.figshare.19418341
title: Additional file 3 of Physiology and metabonomics reveal differences in drought resistance among soybean varieties

description: Additional file 3: Table S1. Metabolites identified in HN44.
DOI: 10.6084/m9.figshare.13126560.v1
title: Additional file 1 of Barley yellow dwarf virus-GAV-derived vsiRNAs are involved in the production of wheat leaf yellowing symptoms by targeting chlorophyll synthase

description: Additional file 1: Table S1. List of the RT-qPCR primers used for validation of target transcripts in this study. Table S2. List of the primers used for VIGS vector construction, detection of silencing efficiency, and determination of viral. Table S3. List of the RT-PCR primers used for cloning of vsiRNA8856 and the TaChlG gene. Table S4. List of the PCR primers used for 5’RLM-RACE.
DOI: 10.6084/m9.figshare.13126563
title: Additional file 2 of Barley yellow dwarf virus-GAV-derived vsiRNAs are involved in the production of wheat leaf yellowing symptoms by targeting chlorophyll synthase

description: Additional file 2: Table S5. The prediction results of putative target transcripts of vsiRNAs.
DOI: 10.6084/m9.figshare.22564195
title: Identification of differentially methylated genes for severe acne by genome-wide DNA methylation and gene expression analysis

description: Severe acne is a chronic inflammatory skin condition that is affected by both genetic and environmental factors. DNA methylation is associated with a variety of inflammatory skin diseases, but its role in severe acne is unclear. In this study, we conducted a two-stage epigenome correlation study using 88 blood samples to identify disease-related differential methylation sites. We found close associations between the DNA methylation at 23 differentially methylated sites (DMSs) and severe acne, including <i>PDGFD, ARHGEF10</i>, etc. Further analysis revealed that differentially methylated genes (<i>PARP8</i> and <i>MAPKAPK2</i>) were also expressed differently between severe acne and health control groups. These findings lead us to speculation that epigenetic mechanisms may play an important role in the pathogenesis of severe acne.
DOI: 10.5281/zenodo.10622826
title: Interannual and seasonal migration patterns of wheat aphids across the Bohai Strait in eastern Asia based on ten years of monitoring data

description: The bird cherry-oat aphid (Rhopalosiphum padi) and the grain aphid (Sitobion miscanthi) are two destructive wheat pests that have caused severe economic losses in China's main wheat-producing regions. Although previous studies have focused  mainly on the population dynamics of wheat pests in wheat fields, little is known about the trans-sea migration of both wheat aphids in eastern China. Here, we conducted a 10-year monitoring from 2012 to 2021 to determine for understanding the aerial migration patterns of both wheat aphids utilizing a suction trap on Beihuang Island (BH), a small island in the center of the Bohai Strait that serves as a seasonal insect migration pathway in eastern Asia. We also simulated the migration trajectories of these pests using the HYSPLIT model. Overall, a total of 6362 alatae S. miscanthi and 335 alatae R. padi were captured, and both wheat aphids exhibited regular patterns of comigration across the sea during late April to late October each year. There were significant interannual and seasonal differences in the migratory numbers of both wheat aphids. Notably, the average daily humidity was the most important meteorological factor affecting migration biomass. The seasonal migration trajectories simulated using the HYSPLIT model revealed different source areas for both wheat aphid species, which mostly originated in Northeast, North and East China. Accordingly, our study provides valuable insights into the occurrence and migration route of wheat aphids in eastern Asia, helps fine-tune forecasting and early warning systems, and thereby guides integrated pest management of wheat aphids in China.
DOI: 10.5281/zenodo.10622827
title: Interannual and seasonal migration patterns of wheat aphids across the Bohai Strait in eastern Asia based on ten years of monitoring data

description: The bird cherry-oat aphid (Rhopalosiphum padi) and the grain aphid (Sitobion miscanthi) are two destructive wheat pests that have caused severe economic losses in China's main wheat-producing regions. Although previous studies have focused  mainly on the population dynamics of wheat pests in wheat fields, little is known about the trans-sea migration of both wheat aphids in eastern China. Here, we conducted a 10-year monitoring from 2012 to 2021 to determine for understanding the aerial migration patterns of both wheat aphids utilizing a suction trap on Beihuang Island (BH), a small island in the center of the Bohai Strait that serves as a seasonal insect migration pathway in eastern Asia. We also simulated the migration trajectories of these pests using the HYSPLIT model. Overall, a total of 6362 alatae S. miscanthi and 335 alatae R. padi were captured, and both wheat aphids exhibited regular patterns of comigration across the sea during late April to late October each year. There were significant interannual and seasonal differences in the migratory numbers of both wheat aphids. Notably, the average daily humidity was the most important meteorological factor affecting migration biomass. The seasonal migration trajectories simulated using the HYSPLIT model revealed different source areas for both wheat aphid species, which mostly originated in Northeast, North and East China. Accordingly, our study provides valuable insights into the occurrence and migration route of wheat aphids in eastern Asia, helps fine-tune forecasting and early warning systems, and thereby guides integrated pest management of wheat aphids in China.
DOI: 10.6084/m9.figshare.19418427.v1
title: Additional file 1 of Human induced-T-to-natural killer cells have potent anti-tumour activities

description: Additional file 1: Table S1. Downregulated differential expression genes (DEGs) in CD4 ITNKs compared to CD4 T cells, |Log2FC| &gt; 1, padj&lt; 0.05.
DOI: 10.6084/m9.figshare.19418451.v1
title: Additional file 9 of Human induced-T-to-natural killer cells have potent anti-tumour activities

description: Additional file 9: Table S9. Longitudinal measurement of relative levels for circulating cytokines/chemokines/growth factors in serum of patient GD001 before and after infusion.
DOI: 10.6084/m9.figshare.19418433.v1
title: Additional file 3 of Human induced-T-to-natural killer cells have potent anti-tumour activities

description: Additional file 3: Table S3. Upregulated differential expression genes (DEGs) in ITNKs compared to NK cells, |Log2FC| &gt; 1, pval&lt; 0.05.
DOI: 10.6084/m9.figshare.14173887
title: Additional file 11 of High-generation near-isogenic lines combined with multi-omics to study the mechanism of polima cytoplasmic male sterility

description: Additional file 11: Table S6. Transcriptome differential gene KEGG enrichment analysis
DOI: 10.6084/m9.figshare.7884218
title: Additional file 13: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S12. Pearson correlation coefficients of gene expression between all samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.14173905.v1
title: Additional file 6 of High-generation near-isogenic lines combined with multi-omics to study the mechanism of polima cytoplasmic male sterility

description: Additional file 6: Table S1. Significantly different metabolites of the metabolome
DOI: 10.6084/m9.figshare.19418451
title: Additional file 9 of Human induced-T-to-natural killer cells have potent anti-tumour activities

description: Additional file 9: Table S9. Longitudinal measurement of relative levels for circulating cytokines/chemokines/growth factors in serum of patient GD001 before and after infusion.
DOI: 10.6084/m9.figshare.7884287
title: Additional file 3: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S3. DEGs in the susceptible accession W11 at 1 d. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.19418448.v1
title: Additional file 8 of Human induced-T-to-natural killer cells have potent anti-tumour activities

description: Additional file 8: Table S8. Characteristics of the infused ITNKs in the clinical trial.
DOI: 10.6084/m9.figshare.7884296
title: Additional file 4: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S4. DEGs in the susceptible accession W11 at 2 d. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.7884320
title: Additional file 8: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S8. One hundred forty-six common DEGs in four comparisons. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.21365994
title: Additional file 5 of Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species

description: Additional file 5: Table S2. List of large repeat sequences in the CPGs of six subgenus Gynopodium species.
DOI: 10.6084/m9.figshare.7884206
title: Additional file 10: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S10. List of significantly differentially expressed TFs. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.7884206.v1
title: Additional file 10: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S10. List of significantly differentially expressed TFs. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.7884233
title: Additional file 15: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S13. Information concerning all primers in the text. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9981314
title: Data of the study "A method to evaluate task-specific importance of spatio-temporal units based on explainable artificial intelligence"

description: Data (numbered one to four) are saved as the byte format and can be read by the pickle library of python.1. The file "holiday_2_test_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the validation set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).2. The file "holiday_2_train_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the training set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).3. The file "holiday_2_test_2017" is the organized taxi origin point distribution dataset collected in three months (from January to March) of 2017. This dataset is used as the test set. Each input data are labeled by the temporal information (weekday or weekend/holiday). 4. The file "totalmean" is the mean value distribution (30*30*48) of the taxi origin point volume. This dataset is used as the input data of the clustering experiment.5. The file "POIStatistics.csv" is the contribution value difference and POI counts of units. This dataset is used as the input data of the regression experiment.<br>
DOI: 10.6084/m9.figshare.21365994.v1
title: Additional file 5 of Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species

description: Additional file 5: Table S2. List of large repeat sequences in the CPGs of six subgenus Gynopodium species.
DOI: 10.6084/m9.figshare.14173914.v1
title: Additional file 9 of High-generation near-isogenic lines combined with multi-omics to study the mechanism of polima cytoplasmic male sterility

description: Additional file 9: Table S4. Enrichment analysis of KEGG metabolites
DOI: 10.6084/m9.figshare.7884359
title: MOESM3 of Kluyveromyces marxianus developing ethanol tolerance during adaptive evolution with significant improvements of multiple pathways

description: Additional file 3. Transcriptome data and differential expression analysis. A file containing the expression data of all genes in K. marxianus based on RNA-seq analysis, as well as their differential expression analysis results, according to the groups defined in Fig.Â 2.
DOI: 10.6084/m9.figshare.22564195.v1
title: Identification of differentially methylated genes for severe acne by genome-wide DNA methylation and gene expression analysis

description: Severe acne is a chronic inflammatory skin condition that is affected by both genetic and environmental factors. DNA methylation is associated with a variety of inflammatory skin diseases, but its role in severe acne is unclear. In this study, we conducted a two-stage epigenome correlation study using 88 blood samples to identify disease-related differential methylation sites. We found close associations between the DNA methylation at 23 differentially methylated sites (DMSs) and severe acne, including <i>PDGFD, ARHGEF10</i>, etc. Further analysis revealed that differentially methylated genes (<i>PARP8</i> and <i>MAPKAPK2</i>) were also expressed differently between severe acne and health control groups. These findings lead us to speculation that epigenetic mechanisms may play an important role in the pathogenesis of severe acne.
DOI: 10.6084/m9.figshare.14173911.v1
title: Additional file 8 of High-generation near-isogenic lines combined with multi-omics to study the mechanism of polima cytoplasmic male sterility

description: Additional file 8: Table S3. Significantly different proteins of proteome
DOI: 10.6084/m9.figshare.7884215
title: Additional file 12: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S11. Binding site prediction of representative defense- and growth-related genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13126715
title: Additional file 3 of Stage-specific protein-domain mutational profile of invasive ductal breast cancer

description: Additional file 3 Table S1: (Related to Fig. 1) The mutational and clinical information for 468 patients.
DOI: 10.6084/m9.figshare.7884233.v1
title: Additional file 15: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S13. Information concerning all primers in the text. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.13126721
title: Additional file 5 of Stage-specific protein-domain mutational profile of invasive ductal breast cancer

description: Additional file 5 Table S3: (Related to Fig. 2) The 1,217 domains that mutated in IDBC.
DOI: 10.6084/m9.figshare.19418595
title: Additional file 3 of The pathogens of secondary infection in septic patients share a similar genotype to those that predominate in the gut

description: Additional file 3. Types and durations of antibiotic therapy of all septic patients.
DOI: 10.6084/m9.figshare.19418592
title: Additional file 2 of The pathogens of secondary infection in septic patients share a similar genotype to those that predominate in the gut

description: Additional file 2. This file contains the detailed information of all septic patients.
DOI: 10.6084/m9.figshare.19418592.v1
title: Additional file 2 of The pathogens of secondary infection in septic patients share a similar genotype to those that predominate in the gut

description: Additional file 2. This file contains the detailed information of all septic patients.
DOI: 10.6084/m9.figshare.13126724
title: Additional file 6 of Stage-specific protein-domain mutational profile of invasive ductal breast cancer

description: Additional file 6 Table S4: (Related to Fig. 2) Functional annotation of the identified 22 protein domains.
DOI: 10.6084/m9.figshare.19418595.v1
title: Additional file 3 of The pathogens of secondary infection in septic patients share a similar genotype to those that predominate in the gut

description: Additional file 3. Types and durations of antibiotic therapy of all septic patients.
DOI: 10.6084/m9.figshare.23612485
title: Additional file 5 of Exploring an immune cells-related molecule in STEMI by bioinformatics analysis

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.7884269.v1
title: Additional file 1: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S1. Number of aligned genes for each sample. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7884281.v1
title: Additional file 2: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S2. Non-redundant DEGs. (XLSX 428 kb)
DOI: 10.6084/m9.figshare.13126727
title: Additional file 7 of Stage-specific protein-domain mutational profile of invasive ductal breast cancer

description: Additional file 7 Table S5: (Related to Fig. 2) The identified 22 protein domains.
DOI: 10.6084/m9.figshare.7884287.v1
title: Additional file 3: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S3. DEGs in the susceptible accession W11 at 1 d. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.13127098
title: MicroRNA-206, IL-4, IL-13, and INF-γ levels in lung tissue and plasma are increased by the stimulation of particulate matter with a diameter of ≤2.5μm, and are associated with the poor prognosis of asthma induced pulmonary arterial hypertension patients

description: This study aimed to explore the prognostic value of particulate matter with a diameter of ≤2.5 μm (PM2.5)-related microRNA-206 combined with interleukin (IL)-4, IL-13 and interferon-γ (INF-γ) in asthma induced pulmonary arterial hypertension (PAH). Fifty SPF BALB/c mice were divided into 5 groups: control group, asthma + PAH group, low-toxic asthma + PAH group, moderately-exposed asthma + PAH group, highly-exposed asthma + PAH group. Differences of microRNA-206, IL-4, IL-13, and INF-γ expression in lung tissue and plasma were detected. A total of 98 patients with asthma induced PAH and 98 healthy persons were collected. Patients were followed up for 12 months. Based on microarray analyses, we found that microRNA-206 may be involved in asthma induced PAH stimulated by PM2.5. Compared with healthy people, plasma microRNA-206, IL-4, IL-13, and INF-γ levels in asthma induced PAH patients were significantly higher (<i>P</i>&lt; .05). Compared with survivors, plasma microRNA-206, IL-4, IL-13, and INF-γ levels in non-survivors were significantly higher (<i>P</i>&lt; .05). Survival analyses showed that compared with low microRNA-206, low IL-4, low IL-13 and low INF-γ groups, survival rate of patients in high microRNA-206 (<i>χ<sup>2</sup> </i>= 4.864, <i>P</i>= .013), high IL-4 (<i>χ<sup>2</sup> </i>= 3.774, <i>P</i>= .038), high IL-13 (<i>χ<sup>2</sup> </i>= 8.375, <i>P</i>&lt; .001) and high INF-γ groups (<i>χ<sup>2</sup> </i>= 9.007, <i>P</i>&lt; .001) were significantly reduced. Established prognostic evaluation model was built and the estimated probability was 0.473. Compared with estimated probability ≤ 0.473, survival rate of patients in estimated probability&gt; 0.473 was significantly reduced (<i>χ<sup>2</sup> </i>= 17.377, <i>P</i>&lt; .001). Current model combining plasma microRNA-206, IL-4, IL-13, and INF-γ has potential significance for prognosis of asthma induced PAH.
DOI: 10.6084/m9.figshare.19418202
title: Additional file 2 of Antibacterial and anti-virulence effects of furazolidone on Trueperella pyogenes and Pseudomonas aeruginosa

description: Additional file 2.
DOI: 10.6084/m9.figshare.7884302
title: Additional file 5: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S5. DEGs in the resistant accession W99 at 1 d. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.7884302.v1
title: Additional file 5: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S5. DEGs in the resistant accession W99 at 1 d. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.7884314.v1
title: Additional file 7: of RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines

description: Table S7. GO analysis of DEGs in four comparisons and a common group. (XLSX 13 kb)