cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1528305
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations.

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html) Excel table and coordinates in .xyz format are available at dx.doi.org/10.6084/m9.figshare.2073322
DOI: 10.6084/m9.figshare.1528308.v1
title: Gaussian Job Archive for C6H6(5)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1528312.v1
title: Gaussian Job Archive for C6H6(7)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1528263
title: OERRH Survey Data 2013-2015 csv

description: CSV file containing responses to surveys conducted by the Hewlett-funded OER Research Hub Project during 2013-2015 exploring key questions around OER use and attitudes. xcel file available at http://figshare.com/articles/OERRH_Survey_Data_2013_2015/1546584You can read about the creation of the file at http://oerhub.net/blogs/cleaning-our-way-to-a-monster-dataset/ and the background of the project at http://oerhub.net/what-we-do/background-to-oer-hub/
DOI: 10.6084/m9.figshare.1528383.v1
title: SP

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528305.v1
title: Bernini

description: Optimization: inputs and outputs.
DOI: 10.6084/m9.figshare.1528237
title: Presentation: guidelines for psychoempirical software engineering

description: Abstract: Affects--emotions and moods--have an impact on cognitive processing activities and the working performance of individuals. It has been established that software development tasks are undertaken through cognitive processing activities. Therefore, we have proposed to employ psychology theory and measurements in software engineering (SE) research. We have called it "psychoempirical software engineering". However, we found out that existing SE research has often fallen into misconceptions about the affect of developers, lacking in background theory and how to successfully employ psychological measurements in studies. The contribution of this paper is threefold. (1) It highlights the challenges to conduct proper affect-related studies with psychology; (2) it provides a comprehensive literature review in affect theory; and (3) it proposes guidelines for conducting psychoempirical software engineering. This is the presentation of the article D. Graziotin, X. Wang, and P. Abrahamsson, “Understanding the Affect of Developers: Theoretical Background and Guidelines for Psychoempirical Software Engineering”, Proc. 2015 ACM 7th International Workshop on Social Software Engineering (SSE 2015), pp. 25-32, 2015. DOI 10.1145/2804381.2804386 It only mentions the guidelines for psychoempirical software engineering because of restricted presentation time.
DOI: 10.6084/m9.figshare.1528383.v2
title: SP

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528237.v1
title: Presentation: guidelines for psychoempirical software engineering

description: Abstract: Affects--emotions and moods--have an impact on cognitive processing activities and the working performance of individuals. It has been established that software development tasks are undertaken through cognitive processing activities. Therefore, we have proposed to employ psychology theory and measurements in software engineering (SE) research. We have called it "psychoempirical software engineering". However, we found out that existing SE research has often fallen into misconceptions about the affect of developers, lacking in background theory and how to successfully employ psychological measurements in studies. The contribution of this paper is threefold. (1) It highlights the challenges to conduct proper affect-related studies with psychology; (2) it provides a comprehensive literature review in affect theory; and (3) it proposes guidelines for conducting psychoempirical software engineering. This is the presentation of the article D. Graziotin, X. Wang, and P. Abrahamsson, “Understanding the Affect of Developers: Theoretical Background and Guidelines for Psychoempirical Software Engineering”, Proc. 2015 ACM 7th International Workshop on Social Software Engineering (SSE 2015), pp. 25-32, 2015. DOI 10.1145/2804381.2804386 It only mentions the guidelines for psychoempirical software engineering because of restricted presentation time.
DOI: 10.6084/m9.figshare.1528305.v2
title: Computational characterization of Cu(I)-catallyze reactions - geometry optimizations

description: Optimization: inputs and outputs.
DOI: 10.6084/m9.figshare.1528383.v3
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528263.v1
title: OERRH Survey Data 2013-2015

description: CSV file containing responses to surveys conducted by the Hewlett-funded OER Research Hub Project during 2013-2015 exploring key questions around OER use and attitudes.
DOI: 10.6084/m9.figshare.1528228
title: Differential relevance of NF-κB and JNK in the pathophysiology of hemorrhage/resususcitation-induced liver injury after chronic ethanol feeding

description: Hemorrhagic shock and resuscitation (H/R) induce hepatic injury and strong inflammatory changes. Chronic ethanol (EtOH) abuse worsens pathophysiological derangements after H/R. Here, the underlying mechanisms involve JNK and NF-κB activation. In our previous studies, we have shown that inhibiting JNK with a cell-penetrating, protease-resistant peptide D-JNKI-1 after H/R in mice with healthy livers ameliorated H/R-induced harmful changes. In this study, we analyzed if JNK inhibition by D-JNKI-1 in chronically EtOH-fed mice after hemorrhagic shock prior to the onset of resuscitation also confers protection. Our findings show that JNK inhibition is protective only in not pre-harmed liver after H/R. Moreover, the pronounced H/R-induced liver damage in mice being chronically fed with ethanol cannot be prevented by JNK inhibition after H/R and seems to be under the control of NF-ĸB.
DOI: 10.6084/m9.figshare.1528229
title: Data from "Spatial associations and patterns of perennial vegetation in a semi-arid steppe: a multivariate geostatistics approach"

description: Data from "Maestre, F. T., F. Rodríguez, S. Bautista, J. Cortina & J. Bellot. 2005. Spatial associations and patterns of perennial vegetation in a semi-arid steppe: a multivariate geostatistics approach. Plant Ecology 179: 133-147. doi: 10.1007/s11258-004-4641-6" There are three spreadsheets with data, one for each sampling grid used. All the data represent the cover of the different species/functional group (in %). See the article for all the details on the methodology and the study site used.
DOI: 10.6084/m9.figshare.1528383.v4
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528227
title: Allele frequencies in severe influenza A cases and mild influenza A controls

description: See García-Etxeberria et al. (2015) PLoS paper
DOI: 10.6084/m9.figshare.1528305.v3
title: Bernini

description: Optimization: inputs and outputs. Computational characterization of Cu(I)-catallyze reactions - geometry optimizations
DOI: 10.6084/m9.figshare.1528227.v1
title: Allele frequencies in severe influenza A cases and mild influenza A controls

description: See García-Etxeberria et al. (2015) PLoS paper
DOI: 10.6084/m9.figshare.1528229.v1
title: Data from "Spatial associations and patterns of perennial vegetation in a semi-arid steppe: a multivariate geostatistics approach"

description: Data from "Maestre, F. T., F. Rodríguez, S. Bautista, J. Cortina & J. Bellot. 2005. Spatial associations and patterns of perennial vegetation in a semi-arid steppe: a multivariate geostatistics approach. Plant Ecology 179: 133-147. doi: 10.1007/s11258-004-4641-6" There are three spreadsheets with data, one for each sampling grid used. All the data represent the cover of the different species/functional group (in %). See the article for all the details on the methodology and the study site used.
DOI: 10.6084/m9.figshare.1528383.v5
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528228.v1
title: Differential relevance of NF-κB and JNK in the pathophysiology of hemorrhage/resususcitation-induced liver injury after chronic ethanol feeding

description: Hemorrhagic shock and resuscitation (H/R) induce hepatic injury and strong inflammatory changes. Chronic ethanol (EtOH) abuse worsens pathophysiological derangements after H/R. Here, the underlying mechanisms involve JNK and NF-κB activation. In our previous studies, we have shown that inhibiting JNK with a cell-penetrating, protease-resistant peptide D-JNKI-1 after H/R in mice with healthy livers ameliorated H/R-induced harmful changes. In this study, we analyzed if JNK inhibition by D-JNKI-1 in chronically EtOH-fed mice after hemorrhagic shock prior to the onset of resuscitation also confers protection. Our findings show that JNK inhibition is protective only in not pre-harmed liver after H/R. Moreover, the pronounced H/R-induced liver damage in mice being chronically fed with ethanol cannot be prevented by JNK inhibition after H/R and seems to be under the control of NF-ĸB.
DOI: 10.6084/m9.figshare.1528305.v4
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html)
DOI: 10.6084/m9.figshare.1528383.v6
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528305.v5
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html)
DOI: 10.6084/m9.figshare.1528383.v7
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528222
title: Uca pugnax claw landmark data

description: This data consists of six landmark coordinates for both the major and minor claws of 63 male fiddler crabs of the species <em>Uca pugnax.</em> The data is in a tab-delimited text file. The landmark descriptions can be found in the associated paper: Rosenberg, M.S. (1997) Evolution of shape differences between the major and minor chelipeds of <em>Uca pugnax</em> (Decapoda: Ocypodidae). <em>Journal of Crustacean Biology</em> 17(1):52–59.
DOI: 10.6084/m9.figshare.1528305.v6
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html)
DOI: 10.6084/m9.figshare.1528383.v9
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions: single-point energies

description: single-point inputs and outputs<br>Excel table and coordinates in .xyz format are available at dx.doi.org/10.6084/m9.figshare.2073322<br>
DOI: 10.6084/m9.figshare.1528222.v1
title: Uca pugnax claw landmark data

description: This data consists of six landmark coordinates for both the major and minor claws of 63 male fiddler crabs of the species <em>Uca pugnax.</em> The data is in a tab-delimited text file. The landmark descriptions can be found in the associated paper: Rosenberg, M.S. (1997) Evolution of shape differences between the major and minor chelipeds of <em>Uca pugnax</em> (Decapoda: Ocypodidae). <em>Journal of Crustacean Biology</em> 17(1):52–59.
DOI: 10.6084/m9.figshare.1528228.v4
title: Differential relevance of NF-κB and JNK in the pathophysiology of hemorrhage/resususcitation-induced liver injury after chronic ethanol feeding

description: Hemorrhagic shock and resuscitation (H/R) induce hepatic injury and strong inflammatory changes. Chronic ethanol (EtOH) abuse worsens pathophysiological derangements after H/R. Here, the underlying mechanisms involve JNK and NF-κB activation. In our previous studies, we have shown that inhibiting JNK with a cell-penetrating, protease-resistant peptide D-JNKI-1 after H/R in mice with healthy livers ameliorated H/R-induced harmful changes. In this study, we analyzed if JNK inhibition by D-JNKI-1 in chronically EtOH-fed mice after hemorrhagic shock prior to the onset of resuscitation also confers protection. Our findings show that JNK inhibition is protective only in not pre-harmed liver after H/R. Moreover, the pronounced H/R-induced liver damage in mice being chronically fed with ethanol cannot be prevented by JNK inhibition after H/R and seems to be under the control of NF-ĸB.
DOI: 10.6084/m9.figshare.1528383.v8
title: Computational analysis of the reaction mechanism of Cu(I)-catalyzed reactions: single-point energies

description: single-point inputs and outputs
DOI: 10.6084/m9.figshare.1528214
title: Table 3. Readmissions and reason for readmissions during the 24- month’s follow-up period.

description: Student’s t- test was used for continuous variables, presented as mean ± standard deviation (SD). Categorical variables are given as percent (%) and are compared using Chi-square test.
DOI: 10.6084/m9.figshare.1528215
title: Table 4. Multiple linear regression analyses (robust variance estimates) to detect intervention effects regarding health, symptoms of depression and perceived control for both patients and partners.

description: a Control group as reference category b Mean difference between the baseline and 24-month follow-up assessment c Robust standard errors (robust variance estimates) PCS = SF-36 physical component scale, MCS = SF-36 mental component scale, PF = physical functioning, RP = role limitations due to physical health problems, BP = bodily pain, GH = general health, VT = vitality, SF = social functioning, RE = role limitations due to emotional problems and MH = mental health, BDI = Beck Depression Inventory, CAS = Control Attitude Scale.
DOI: 10.6084/m9.figshare.1528212
title: Proposed Flood Resilient Redesign of Lower City Park

description: Since 2008, the Lower City Park has been closed for a total of six months due to flooding. Costs associated with recent flood-related closures stand at $1.6 million. Therefore, it is imperative to design Lower City Park to reach the following goals:<br>1. Lower City Park as a flood resilient natural area, including native prairie and wetland. 2. Increase biodiversity and ecosystem services. 3. Reduce maintenance and flood recovery costs.4. Relocate structures and events disrupted by flooding. 5. Maintain recreation opportunities.6. Provide educational opportunities and experience of nature through building interpretive trails.
DOI: 10.6084/m9.figshare.1528228.v3
title: S 1. Graph data as supporting information.

description: Hemorrhagic shock and resuscitation (H/R) induce hepatic injury and strong inflammatory changes. Chronic ethanol (EtOH) abuse worsens pathophysiological derangements after H/R. Here, the underlying mechanisms involve JNK and NF-κB activation. In our previous studies, we have shown that inhibiting JNK with a cell-penetrating, protease-resistant peptide D-JNKI-1 after H/R in mice with healthy livers ameliorated H/R-induced harmful changes. In this study, we analyzed if JNK inhibition by D-JNKI-1 in chronically EtOH-fed mice after hemorrhagic shock prior to the onset of resuscitation also confers protection. Our findings show that JNK inhibition is protective only in not pre-harmed liver after H/R. Moreover, the pronounced H/R-induced liver damage in mice being chronically fed with ethanol cannot be prevented by JNK inhibition after H/R and seems to be under the control of NF-ĸB.
DOI: 10.6084/m9.figshare.1528305.v7
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html)
DOI: 10.6084/m9.figshare.1528211
title: Table 2. Clinical and demographic characteristics of the patient-partner dyads at baseline.

description: a Lung disease was significantly (p &lt;0.05) more common in the partner control group compared to the partner intervention group.
DOI: 10.6084/m9.figshare.1528212.v1
title: Proposed Flood Resilient Redesign of Lower City Park

description: Since 2008, the Lower City Park has been closed for a total of six months due to flooding. Costs associated with recent flood-related closures stand at $1.6 million. Therefore, it is imperative to design Lower City Park to reach the following goals:<br>1. Lower City Park as a flood resilient natural area, including native prairie and wetland. 2. Increase biodiversity and ecosystem services. 3. Reduce maintenance and flood recovery costs.4. Relocate structures and events disrupted by flooding. 5. Maintain recreation opportunities.6. Provide educational opportunities and experience of nature through building interpretive trails.
DOI: 10.6084/m9.figshare.1528209
title: Urban pollinator project

description: This is a project whose goal was to provide the City of Iowa City, IA with information about how urban bee diversity compares across neighborhoods and public sites and how bee diversity is related to floral diversity. Pan trapping and sweep netting were adopted to collect bees in the field followed by lab observation on genus and gender. Bee diversity was correlated to floral diversity along urban-rural gradient.
DOI: 10.6084/m9.figshare.1528210
title: Table 1. Description of the modules in the intervention

description: Content of each of the three modules utilised in the intervention.
DOI: 10.6084/m9.figshare.1528208
title: dots1.lsa.input.output

description: Input into LSA for time-lagged and non-time lagged pairwise correlation of taxa relative abundances and environmental parameters.
DOI: 10.6084/m9.figshare.1528210.v1
title: Table 1. Description of the modules in the intervention

description: Content of each of the three modules utilised in the intervention.
DOI: 10.6084/m9.figshare.1528197
title: File S1. Study protocol Swedish Ethical-version.

description: Study protocol Swedish Ethical-version.
DOI: 10.6084/m9.figshare.1528208.v1
title: dots1.lsa.input.output

description: Input into LSA for time-lagged and non-time lagged pairwise correlation of taxa relative abundances and environmental parameters.
DOI: 10.6084/m9.figshare.1528195
title: Table S3. CONSORT 2010 Checklist.

description: CONSORT 2010 Checklist.
DOI: 10.6084/m9.figshare.1528196
title: File S2. Study protocol translation in English.

description: Study protocol translation in English.
DOI: 10.6084/m9.figshare.1528197.v1
title: File S1. Study protocol Swedish Ethical-version.

description: Study protocol Swedish Ethical-version.
DOI: 10.6084/m9.figshare.1528192
title: Nederlandsche Unie, sluitzegels

description: Collectie A.J.R. Nivard, oorlogsdocumentatie.
DOI: 10.6084/m9.figshare.1528187
title: Code - Generic and consistent confidence and credible regions

description: Implementation of <strong>Generic and consistent confidence and credible regions. Christian Bartels (2015) figshare.</strong> <strong>http://dx.doi.org/10.6084/m9.figshare.1528163</strong> A generic, consistent, efficient and exact method is proposed for set selection. The method is generic in that its definition and implementation uses only the likelihood function. The method is consistent in that the same criterion is used to select confidence and credible sets making the two kinds of sets consistent even though the two sets may differ since they answer different questions. The method is exact in that no approximations are used except numerical integration which can be made as exact as needed by investing computational resources. The method is comparatively efficient and requires computational resources comparable to what is needed for a Bayesian analysis and may be more efficient than bootstrap of maximum likelihood estimates as it avoids repeated minimizations of randomly perturbed data. Central to the proposed approach are the use of (1) reference priors (e.g., Bernardo, 2005), (2) pointwise mutual information as test statistics and (3) importance sampling to efficiently evaluate series of related statistical integrals (e.g., Schafer, 2009). These central pieces are expected to be useful to address statistical questions beyond set selection.
DOI: 10.6084/m9.figshare.1528187.v1
title: Code - Generic and consistent confidence and credible regions

description: Implementation of <strong>Generic and consistent confidence and credible regions. Christian Bartels (2015) figshare.</strong> <strong>http://dx.doi.org/10.6084/m9.figshare.1528163</strong> A generic, consistent, efficient and exact method is proposed for set selection. The method is generic in that its definition and implementation uses only the likelihood function. The method is consistent in that the same criterion is used to select confidence and credible sets making the two kinds of sets consistent even though the two sets may differ since they answer different questions. The method is exact in that no approximations are used except numerical integration which can be made as exact as needed by investing computational resources. The method is comparatively efficient and requires computational resources comparable to what is needed for a Bayesian analysis and may be more efficient than bootstrap of maximum likelihood estimates as it avoids repeated minimizations of randomly perturbed data. Central to the proposed approach are the use of (1) reference priors (e.g., Bernardo, 2005), (2) pointwise mutual information as test statistics and (3) importance sampling to efficiently evaluate series of related statistical integrals (e.g., Schafer, 2009). These central pieces are expected to be useful to address statistical questions beyond set selection.
DOI: 10.6084/m9.figshare.1528192.v1
title: Nederlandsche Unie, sluitzegels

description: Collectie A.J.R. Nivard, oorlogsdocumentatie.
DOI: 10.6084/m9.figshare.1528159
title: Supplemental data - Phenolic Metabolites - Ounnas et al 2015 Plos One

description: Phenolic metabolites as detected in the urine of rats fed either a whole rye or a refined rye diet - as presented in Ounnas et al, Plos One, 2015
DOI: 10.6084/m9.figshare.1528160
title: Supplemental data - bacterial family abundances - Ounnas et al 2015 Plos One

description: Bacterial familiy abundances as detected in stools and caecum of rats fed a whole rye or refined rye diet, as presented in Ounnas et al - Plos One - 2015
DOI: 10.6084/m9.figshare.1528155
title: Google Scholar Citation Profiles of Dutch Universities

description: Ranking researchers citedness profiles in Google Scholar of Dutch Universities collected at the beginning of July 2015
DOI: 10.6084/m9.figshare.1528155.v1
title: Google Scholar Citation Profiles of Dutch Universities

description: Ranking researchers citedness profiles in Google Scholar of Dutch Universities collected at the beginning of July 2015
DOI: 10.6084/m9.figshare.1528124
title: Microbiological assessment of pre-monsoon and post-monsoon open well water quality in Karumalloor panchayat, Ernakulam, Kerala

description: Ground water is a source of potable water among the rural population in Kerala. This study was carried out among the rural population of Karumalloor panchayat in Paravoor Taluk, Ernakulam district. Bacteriological analysis of water from open wells was carried out in two consecutive years as part of department programme, once during post-monsoon and other during pre-monsoon season. Twenty three percentage of post-monsoon water samples tested were potable however only 5% of pre-monsoon samples were potable.