cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26211637
title: Additional file 2 of Facilitators, barriers, and changes in POCUS use: longitudinal follow-up after participation in a national point-of-care ultrasound training course in Japan

description: Additional file 2: Point of care Ultrasound Post-course Survey Questions
DOI: 10.5281/zenodo.13228022
title: Polyclonal origins of human premalignant colorectal lesions

description: Cancer is generally thought to be caused by expansion of a single mutant cell. However, some analyses of early colorectal cancer lesions suggest that these tumors start not from a monoclonal expansion of a single cell, but rather from expansion of multiple, genetically distinct cell populations. Polyclonal tumor initiation is difficult to observe in patient samples because it requires profiling early-stage lesions that have not yet undergone clonal selective sweeps. Therefore, to study the clonality of early colorectal cancer initiation, we collected normal colorectal mucosa, benign and dysplastic premalignant polyps, and malignant adenocarcinomas (127 samples) from six individuals with familial adenomatous polyposis (FAP). Individuals with FAP have a germline heterozygous APC mutation, increasing their risk of colorectal cancer and leading to large numbers of premalignant polyps by early adulthood. Through analysis of whole-genome and/or whole-exome sequencing data of colectomy samples, we found that many premalignant polyps (40% with benign histology, 26% with dysplasia) were composed of multiple genetic lineages that diverged early and therefore were likely polyclonal. Our results have important implications for early neoplastic events and tumor heterogeneity; they further suggest that cell-intrinsic growth advantages may not be the only cause of tumor initiation.
DOI: 10.6084/m9.figshare.26211383
title: Additional file 1 of Selective anti-tumor activity of glutathione-responsive abasic site trapping agent in anaplastic thyroid carcinoma

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26211383.v1
title: Additional file 1 of Selective anti-tumor activity of glutathione-responsive abasic site trapping agent in anaplastic thyroid carcinoma

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26211643
title: Additional file 2 of Gut microbiome and major depressive disorder: insights from two-sample Mendelian randomization

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26211643.v1
title: Additional file 2 of Gut microbiome and major depressive disorder: insights from two-sample Mendelian randomization

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26211326
title: Additional file 1 of The contribution of silencer variants to human diseases

description: Additional file 1: Supplementary tables. It contains all supplementary tables.
DOI: 10.6084/m9.figshare.26211326.v1
title: Additional file 1 of The contribution of silencer variants to human diseases

description: Additional file 1: Supplementary tables. It contains all supplementary tables.
DOI: 10.6084/m9.figshare.26777098
title: Registro de Protocolo de Revisão Integrativa

description: Revisão Integrativa para levantamento das publicações sobre as práticas clínicas na punção, manutenção e manuseio dos Cateter Intravenoso Periférico curtos em recém-nascidos hospitalizados nas unidades neonatais ou no alojamento conjunto. O objetivo será correlacionar as práticas clínicas com a segurança e qualidade do cuidado.Método: As etapas metodológicas para desenvolver a revisão integrativa, descritas por Whittemore e Knafl (2005) sobre o conceito de integração, são:<b> estágio 1</b> – identificação do problema, <b>estágio 2</b> – busca na literatura, <b>estágio 3</b> – avaliação dos dados, <b>estágio 4</b> - análise dos dados, <b>estágio 5</b> – apresentação dos dados.A busca será definida por meio da estratégia <b>PICo</b> ou seja: <b>P</b> (população), <b>I</b> (interesse), <b>Co</b> (contexto):- <b>P</b>= recém-nascido- <b>I</b>= Cateter - intravenosos periféricos (CIVP) curtos- <b>Co=</b> Unidade de Neonatalogia e Maternidade.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.26746577
title: Additional file 4 of Clinical application of targeted next-generation sequencing in severe pneumonia: a retrospective review

description: Additional file4 (XLSX 14 kb)
DOI: 10.6084/m9.figshare.26746577.v1
title: Additional file 4 of Clinical application of targeted next-generation sequencing in severe pneumonia: a retrospective review

description: Additional file4 (XLSX 14 kb)
DOI: 10.6084/m9.figshare.26211435
title: Additional file 1 of Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26211435.v1
title: Additional file 1 of Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26211306
title: Additional file 1 of Genome-scale metabolic network of human carotid plaque reveals the pivotal role of glutamine/glutamate metabolism in macrophage modulating plaque inflammation and vulnerability

description: Supplementary Material 1.
DOI: 10.15468/dl.76cyfh
title: Occurrence Download

description: A dataset containing 4744 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clonostachys rosea (Link) Schroers, Samuels, Seifert & W.Gams"
 ]
}

 The dataset includes 4744 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181297-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jq8mj
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogogyne tenuiflora A.Gray"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089341-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2fyhy
title: Occurrence Download

description: A dataset containing 708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-2030.0",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus montezumae Lamb."
 ]
}

 The dataset includes 708 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108116-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeaveq
title: Occurrence Download

description: A dataset containing 2008 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psidium sartorianum (O.Berg) Nied."
 ]
}

 The dataset includes 2008 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125613-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xd5w2z
title: Occurrence Download

description: A dataset containing 2535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrolittorina unifasciata (J.E.Gray, 1826)"
 ]
}

 The dataset includes 2535 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078511-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhnpm2
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptanthus oblanceolatus T.W.Nelson & J.P.Nelson"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145545-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wy4d73
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colopisthus ronrico Moore & Brusca, 2003"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116034-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh5vaz
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogonarthria fleckii (Hack.) Hack."
 ]
}

 The dataset includes 266 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089345-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtzk7e
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neopisosoma curacaoense (Schmitt, 1924)"
 ]
}

 The dataset includes 43 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126443-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etu7wy
title: Occurrence Download

description: A dataset containing 538 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptanthus petiolaris A.Gray"
 ]
}

 The dataset includes 538 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145550-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhjt9y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoma pezizoides (Ellis & Everh.) Boerema & Kesteren",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125611-230530130749713/datasets/export for details.
DOI: 10.15468/dl.btwm9b
title: Occurrence Download

description: A dataset containing 420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-79.8716098000000017 40.3581841999999966, -79.8716098000000017 40.3601076100000000, -79.8716098000000017 40.3622573099999968, -79.8716098000000017 40.3638412999999971, -79.8716098000000017 40.3657647100000005, -79.8716098000000017 40.3668961300000007, -79.8716098000000017 40.3694983999999977, -79.8696822699999984 40.3694983999999977, -79.8665070800000052 40.3694983999999977, -79.8634452999999951 40.3694983999999977, -79.8603835100000055 40.3694983999999977, -79.8584557199999949 40.3694983999999977, -79.8568681299999952 40.3694983999999977, -79.8540334000000058 40.3694983999999977, -79.8540334000000058 40.3680275500000008, -79.8540334000000058 40.3656515699999972, -79.8540334000000058 40.3636150199999975, -79.8540334000000058 40.3608996099999970, -79.8540334000000058 40.3581841999999966, -79.8561877300000020 40.3581841999999966, -79.8580021199999948 40.3581841999999966, -79.8601567099999983 40.3581841999999966, -79.8621978999999982 40.3581841999999966, -79.8652596900000020 40.3581841999999966, -79.8673008800000019 40.3581841999999966, -79.8696822699999984 40.3581841999999966, -79.8716098000000017 40.3581841999999966))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 420 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078387-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr3pwy
title: Occurrence Download

description: A dataset containing 470844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erinaceus europaeus Linnaeus, 1758"
 ]
}

 The dataset includes 470844 records from 1132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078441-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrawhg
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptanthus squamiformis Goodman"
 ]
}

 The dataset includes 161 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145555-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6st76v
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrolittorina fernandezensis (Rosewater, 1970)"
 ]
}

 The dataset includes 30 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078505-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvkjnr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antimima stokoei (L.Bolus) H.E.K.Hartmann"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039352-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc477r
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrodrillia saxea (G.B.Sowerby Iii, 1896)"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078470-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lavuv1
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Penaeus semisulcatus De Haan, 1844",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 3 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000607-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mncgff
title: Occurrence Download

description: A dataset containing 581051 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Butterflies and Forester Moths Databank"
 ]
}

 The dataset includes 581051 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003242-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssik9k
title: Occurrence Download

description: A dataset containing 13691649 species occurrences available in GBIF matching the query:
{
 "or" : [
 "DecimalLatitude is greater than or equal to 65",
 "DecimalLatitude is less than or equal to -65"
 ]
}

 The dataset includes 13691649 records from 2409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012214-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jchaym
title: Occurrence Download

description: A dataset containing 1675 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hadrurus arizonensis Ewing, 1928"
 ]
}

 The dataset includes 1675 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017313-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13856672
title: Melange (COGs and Pfams) and AntiSMASH (BGCs) annotations of the genome sequence of Lentilitoribacter sp. EG35

description: Secondary Metabolite Encoding Biosynthetic Gene Cluster (BGC) annotation files from antiSMASH bacterial version 7.1.0 as well as Clusters of Orthologous Groups of proteins (COG) and Protein families (Pfam) annotations from the Melange pipeline (https://github.com/sandragodinhosilva/melange) of the genome assembly of Lentilitoribacter sp. strain EG35, isolated from the temperate octocoral Eunicella gazella sampled in the Northeast Atlantic Ocean, Portugal. 

The data correspond to the genome assembly of EG35 available under the BioProject accession number PRJNA1135483.

To interactively view the AntiSMASH results, please download and extract the entire content of the AntiSMASH folder, and open the HTML file named "index".

This dataset is part of the following study:

Tina Keller-Costa, Selene Madureira, Ana S. Fernandes, Lydia Kozma, Jorge M.S. Gonçalves, Cristina Barroso, Conçeicão Egas, & Rodrigo Costa 2024. Genome sequence of the marine alphaproteobacterium Lentilitoribacter sp. EG35 isolated from the temperate octocoral Eunicella gazella. Microbiology Resource Announcements. MRA00872-24.
DOI: 10.5281/zenodo.13856673
title: Melange (COGs and Pfams) and AntiSMASH (BGCs) annotations of the genome sequence of Lentilitoribacter sp. EG35

description: Secondary Metabolite Encoding Biosynthetic Gene Cluster (BGC) annotation files from antiSMASH bacterial version 7.1.0 as well as Clusters of Orthologous Groups of proteins (COG) and Protein families (Pfam) annotations from the Melange pipeline (https://github.com/sandragodinhosilva/melange) of the genome assembly of Lentilitoribacter sp. strain EG35, isolated from the temperate octocoral Eunicella gazella sampled in the Northeast Atlantic Ocean, Portugal. 

The data correspond to the genome assembly of EG35 available under the BioProject accession number PRJNA1135483.

To interactively view the AntiSMASH results, please download and extract the entire content of the AntiSMASH folder, and open the HTML file named "index".

This dataset is part of the following study:

Tina Keller-Costa, Selene Madureira, Ana S. Fernandes, Lydia Kozma, Jorge M.S. Gonçalves, Cristina Barroso, Conçeicão Egas, & Rodrigo Costa 2024. Genome sequence of the marine alphaproteobacterium Lentilitoribacter sp. EG35 isolated from the temperate octocoral Eunicella gazella. Microbiology Resource Announcements. MRA00872-24.
DOI: 10.15468/dl.gw853n
title: Occurrence Download

description: A dataset containing 33948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Staehelina dubia L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33948 records from 356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017314-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhfyex
title: Occurrence Download

description: A dataset containing 596 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Styrax obassis"
 ]
}

 The dataset includes 596 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045852-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5rz8q
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siphonaria crenata",
 "Country is Egypt",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045853-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv4jdr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siphonaria crenata",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045854-250920141307145/datasets/export for details.
DOI: 10.15468/dl.d88v7n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Hechtia marthae",
 "Country is Mexico",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045832-250920141307145/datasets/export for details.
DOI: 10.15468/dl.xdpjrh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siphonaria crenata",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045855-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3v2vc5
title: Occurrence Download

description: A dataset containing 6863947 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Orthoptera"
 ]
}

 The dataset includes 6863947 records from 6679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045787-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0205235.10fu
title: SH0205235.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.