cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hp758sn/2
title: Single phenotypic measurements for Helgeland house sparrows adjusted to May 2CY

description: File containing single phenotypic measurements for Helgeland individuals used in main analysis (metapopulation location 66°30’N, 12°30’E). Measurements were taken from all adult birds recorded between 1998-2013. To give a single value for each individual, measurements of adult birds (second calendar year (2CY) and older) were adjusted to May in 2CY using a linear mixed effects model with age, age2 and month as fixed factors, random intercepts for year, cohort and ID number, and a random slope for the effect of age within ID number to account for any between-individual variation. If age and month effects were significant (P &lt; 0.05) in likelihood ratio tests, predicted values from the model were used to adjust measurements to May in 2CY before calculation of mean phenotypic values. ID is individual id determined by ring number. Sex is the genetic sex. Hatchyear is the first year recorded for birds measured as nestlings or fledged juveniles, or the year prior to first year recorded for birds ringed as adults. Hatch island is the island the bird was first recorded on. Island is hatch island if hatch island was one of the 8 SNP typed islands, else it is the island on which the blood sample for SNP typing was taken.
DOI: 10.5061/dryad.hp758sn/3
title: .map file for Helgeland individuals

description: PLINK .map file containing marker information for Helgeland individuals. File contains information on chromosome, marker id, and bp position within chromosome.
DOI: 10.5061/dryad.hp758sn/4
title: .ped file for Helgeland individuals

description: PLINK .ped file containing genotype information for all Helgeland individuals used in analysis.
DOI: 10.5061/dryad.kj83851/1
title: Survival data

description: Text (csv) file with the data from the survival experiment. The count of beetles that survived (Y) and died (N) for each population and host plant is given.
DOI: 10.5061/dryad.kj83851/2
title: No-choice host preference data

description: Text (csv) file with the data from the no-choice host preference experiment. Each row denotes a single individual and gives the number of eggs laid on the host (as well as the number laid on the Petri dish).
DOI: 10.5061/dryad.kj83851/3
title: Choice test host preference data

description: Text (csv) file with the results from the choice host preference experiment. There is one row per female beetle. The number of eggs laid on the single cowpea (EGGSON1CP) and on the 10 seeds from the less preferred host (EGGSOTHER10), that is lentil (CPVSLE) or pea (CPVSKP) is given, along with the number of eggs laid on the Petri dish.
DOI: 10.5061/dryad.m58q16m/1
title: Microsatellite Genotype Data - STRUCTURAMA input

description: STRUCTURAMA file containing genotypic microsatellite data.
DOI: 10.5061/dryad.m58q16m/2
title: Supporting Data 2_Sequences

description: CytB and CO1 sequences with associated GenBank accession numbers.
DOI: 10.5061/dryad.qq6hv63/4
title: Dataset1_FcC_supermatrix_507_nuc

description: Final nucleotide alignment for 507 loci (Dataset 1, probe region only) used in phylogenetic analyses.
DOI: 10.5061/dryad.qq6hv63/5
title: Dataset1_FcC_supermatrix_507_AA

description: Final amino acid alignment for 507 loci (Dataset 1, probe region only) used in phylogenetic analyses.
DOI: 10.5061/dryad.qq6hv63/6
title: Dataset2_FcC_supermatrix_D60E15_FULL_LENGTH_FINAL

description: Final nucleotide alignment for 507 loci (Dataset 2, probe and flanking regions) used in phylogenetic analyses.
DOI: 10.5061/dryad.t0554g0/1
title: Data File 1

description: The number of OTUs retained for the community analysis, with the numbers of reads attributed to them in each sample.
DOI: 10.5061/dryad.t0554g0/2
title: Data File 2

description: Raw ct values from the qPCR used to quantify the abundance of microbiota
DOI: 10.17632/56hd9d2znk.1
title: Data for: Analysis of the $\tilde{A}-\tilde{X}$ bands of the Ethynyl Radical near 1.48$\mu$m and Re-evaluation of $\tilde{X}$ State Energies

description: Spreadsheet of supplementary data for the paper, consisting of 5 worksheets
DOI: 10.17632/9hhmsdcg5r.1
title: Data for: Analysis of the $\tilde{A}-\tilde{X}$ bands of the Ethynyl Radical near 1.48$\mu$m and Re-evaluation of $\tilde{X}$ State Energies

description: Spreadsheet containing 5 worksheets of spectroscopic data and analysis in open document format
DOI: 10.5061/dryad.3vk16fq/2
title: Assemblage_HAB_resistance_func

description: This is the function called by the main program.
DOI: 10.5061/dryad.3vk16fq/3
title: for Dryad - Lake Koronia

description: This is the time-series phytoplankton data for Lake Koronia, Greece
DOI: 10.5061/dryad.3vk16fq/4
title: for Dryad - Lake Mikri Prespa

description: This is the time-series phytoplankton data for Lake Mikri Prespa, Greece
DOI: 10.5061/dryad.3vk16fq/5
title: for Dryad - Lake Volvi

description: This is the time-series phytoplankton data for Lake Volvi, Greece
DOI: 10.5061/dryad.3vk16fq/6
title: for Dryad - Lake Constance

description: time series data for Lake Constance, Germany
DOI: 10.5061/dryad.3vk16fq/7
title: for Dryad - Lake Mezeshegyi

description: time series data for Lake Mezeshegyi, Hungary
DOI: 10.5061/dryad.3vk16fq/8
title: for Dryad - Lake Fancsika1

description: time series data for Lake Fancsika1, Hungary
DOI: 10.5061/dryad.3vk16fq/9
title: for Dryad - Lake Fancsika2

description: time series data for Lake Fancsika2, Hungary
DOI: 10.5061/dryad.40655hr/1
title: Malafaiaetal_Supplementary Data 1

description: List of osteological elements collected in the Cambelas fossil site
DOI: 10.5061/dryad.40655hr/2
title: Malafaiaetal_Supplementary Data 2

description: Measurements of the caudal vertebrae of SHN.019.
DOI: 10.5061/dryad.40655hr/3
title: Malafaiaetal_Supplementary Data 3

description: Measurements of the appendicular elements of SHN.019.
DOI: 10.5061/dryad.4bp82rc/1
title: Supplemental

description: This contains additional graphs that detail morphological change through time and provide results of the analyses excluding ancestral nodes
DOI: 10.5061/dryad.66jn7g7/1
title: Morphological Data

description: Morphological data (see README.md for variable description). All data & analysis files available as an .Rproj project file from GitHub: https://github.com/ColauttiLab/BlepharisMorphData
DOI: 10.5061/dryad.66jn7g7/2
title: LDA.R

description: R code for Linear Discriminant Analysis
DOI: 10.5061/dryad.66jn7g7/3
title: LDAvsISSR

description: R code for comparing LDA with NMDS from ISSR genotype data
DOI: 10.5061/dryad.66jn7g7/4
title: MuhaidatEtAl_ISSRData

description: ISSR genotype data
DOI: 10.5061/dryad.6980c06/13
title: SPACE_FU_KL

description: see SSanche - PLOS One - File descriptions.docx
DOI: 10.5061/dryad.6rv7470/1
title: 1
DOI: 10.5061/dryad.6rv7470/2
title: 2.WMV

description: Vortex structure in up-stroke
DOI: 10.5061/dryad.6rv7470/3
title: Schlieren Setup
DOI: 10.5061/dryad.8s3682g/1
title: ILPMinPPI_data
DOI: 10.5061/dryad.b40gd24/1
title: Monotomidae of GA CSV and KML files

description: Contains CSV and KML files organized by species. Each KML file can be opened in Google Earth to view occurrences geospatially. The CSV files contain flat data files with Darwin-Core headers of all species occurrences of Monotomidae occurring in Georgia, USA, at the time of this study.
DOI: 10.5061/dryad.c54h30c/1
title: Riecke_RData

description: RData file containing the capture-recapture and covariate data required to run the Bayesian RD model described in Riecke et al., Methods in Ecology and Evolution.
DOI: 10.5061/dryad.c54h30c/2
title: biological_model

description: Bayesian model used to estimate survival and breeding propensity of black brent nesting on the Yukon-Kuskokwim River Delta, Alaska, 1988-2014. From Riecke et al., Methods in Ecology and Evolution.
DOI: 10.5061/dryad.c54h30c/3
title: Riecke_et al_supplementary_material_1

description: This R script simulates and analyzes robust design data with random emigration. The model estimates detection at the population level.
DOI: 10.5061/dryad.c54h30c/4
title: Riecke_et al_supplementary_material_2

description: This script simulates and analyzes data with Markovian emigration. The model is parameterized with separate process and observation states, and detection is estimated at the population level.
DOI: 10.5061/dryad.c8m244m/1
title: Benadi_Pauw_2018_J_Ecol

description: Data and code to reproduce the analyses in:
Benadi, G. & Pauw, A. (2018) Frequency dependence of pollinator visitation rates suggests that pollination niches can allow plant species coexistence. Journal of Ecology.
DOI: 10.5061/dryad.d1c8046/1
title: Lyme_Study_Dataset_README
DOI: 10.5061/dryad.dv164/2
title: Example files

description: Data files used in "A geography aware reconciliation method to investigate diversification patterns in host/parasite cospeciation interactions "
DOI: 10.5061/dryad.f1s76f2/1
title: Six1, Six4, double knockout E12.5

description: Six1, Six4, double knockout analyzed at embryonic day E12.5
DOI: 10.5061/dryad.f1s76f2/10
title: mouse control embryo E17.5

description: mouse control embryo analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/11
title: Shh hypomorph mouse embryo E17.5

description: Shh hypomorph mouse embryo analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/17
title: (INV6b-C2)/(DEL-90-C2) E17.5

description: Inversion of the genomic region (INV6b-C2) and Deletion of the genomic region (DEL-90-C2) analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/18
title: mouse control embryo E18.5

description: mouse control embryo analyzed at embryonic day E18.5
DOI: 10.5061/dryad.f1s76f2/2
title: Nkx2.2-Cre/Shhfloxed/floxed embryos E15.5

description: Nkx2.2-Cre/Shhfloxed/floxed mouse embryo analyzed at embryonic day E15.5
DOI: 10.5061/dryad.f1s76f2/20
title: Six1 knockout E18.5

description: Six1 knockout analyzed at embryonic day E18.5
DOI: 10.5061/dryad.f1s76f2/3
title: mouse control embryo

description: mouse control embryo analyzed at embryonic day E12.5
DOI: 10.5061/dryad.f1s76f2/5
title: mouse control embryo E15.5

description: mouse control embryo analyzed at embryonic day E15.5
DOI: 10.5061/dryad.f53ph33/1
title: Cheetah_cub_recruitment_data
DOI: 10.5061/dryad.g23j32s/1
title: Sex of depositor and diet proportions for individual scat samples

description: The file lists the sex of the scat depositor, individual sample ID, sampling month, sampling season, sampling year, and sampling site, as well as the diet proportions of different prey species (in %) for each individual sample used in the study. Salmonid prey species proportions are listed separately for juvenile and adult salmon. The columns with prey species diet proportions are followed by columns showing diet proportions by order (for fish) or higher taxonomic level for invertebrates (Crustacea and Cephalopoda).
DOI: 10.5061/dryad.gr656gk/1
title: Parameter estimates and simulation output

description: These data include parameter estimates and simulation output for two outbreaks of foot-and-mouth disease (FMD): the outbreak in UK in 2001 and the outbreak in Miyazaki, Japan in 2010.  Parameters are estimated at several time points throughout both outbreaks.  Simulation of several control interventions from these time points onwards was also performed and the simulated total number of culled livestock is 
recorded.  Details of the model structure and parameterisation of the model are described in the Methods section of the manuscript.
DOI: 10.5061/dryad.q1c1j71/1
title: Supplementary_material
DOI: 10.5061/dryad.q1c1j71/2
title: Support

description: Table with support values for all the experiments.
DOI: 10.5061/dryad.qq6hv63/7
title: A3_MCC_BEAST

description: Maximum Clade Credibility tree from most likely divergence time estimate (Table 2 - Analysis A3).
DOI: 10.5061/dryad.qq6hv63/8
title: A3_MCC_BEAST_infile

description: BEAST infile for most likely divergence time estimate (Table 2 - Analysis A3).
DOI: 10.5061/dryad.qq6hv63/9
title: Gene_Coverage

description: Gene coverage information for nucleotide dataset for 507 loci (probe region only).
DOI: 10.5061/dryad.r711309/1
title: Measurement and moulting data for Dalmanitina specimens used in the study

description: Supplementary 1
DOI: 10.5061/dryad.r711309/2
title: Additional photos of Dalmanitina specimens from the Czech Geological Survey

description: Supplementary 2
DOI: 10.5061/dryad.tf04g6v/1
title: VCF file containing information on the identified SNPs

description: The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing genotyping of 64 clonal Norway spruce lines.
DOI: 10.5061/dryad.v8k18m8/1
title: Toxin production scans

description: Contains data for Figures 4, 6, S4a, and S4d.
DOI: 10.5061/dryad.v8k18m8/2
title: Bursting scan

description: Data from toxin and antitoxin bursting simulations used in Figure S4.
DOI: 10.5061/dryad.v8k18m8/3
title: Antitoxin degradation scan

description: Data from antitoxin degradation scan simulations used in Figure S4.
DOI: 10.17632/9vv52rfjv4.1
title: Data for: Quantification of High Temperature Oxidation of U3O8 and UO2

description: Supplementary data cited in the manuscript
DOI: 10.17632/mjjnnswnzb.1
title: Data for: A pin-on-disc study of airborne wear particle emissions from studded tyre on concrete road contacts
DOI: 10.5061/dryad.1m6764d/1
title: Supplemental Data

description: Appendix e-1-4, Figure e-1
DOI: 10.5061/dryad.2mv5722/1
title: Holland_etal_apex_pred_OtterMatrix

description: CSV file with detection matrix for river otter data, in southern Illinois 2012-2014. Additional information available in readme file.
DOI: 10.5061/dryad.2mv5722/2
title: READ_ME_Holland_etal_apex_pred

description: Text file containing meta data for all csv files in data package.
DOI: 10.5061/dryad.2mv5722/3
title: Holland_etal_apex_pred_MinkMatrix

description: CSV file with detection matrix for mink data, in southern Illinois 2012-2014. Additional information available in readme file.
DOI: 10.5061/dryad.2mv5722/4
title: Holland_etal_apex_pred_DectData

description: CSV file with detection data from top models for occupancy of mink and river otter in southern Illinois, 2012-2014.
DOI: 10.5061/dryad.2mv5722/5
title: Holland_etal_apex_pred_SiteData

description: CSV file with site variables used in top models of initial occupancy, colonization, or extinction aspects of multi-season occupancy models for mink and river otter in southern Illinois, 2012-2014.
DOI: 10.5061/dryad.2mv5722/6
title: Holland_etal_apex_pred_SeasData

description: CSV with seasonal variables from top models for multi-season occupancy of river otter and mink in southern Illinois, 2012-2014.
DOI: 10.5061/dryad.30mc3h7/1
title: Zip file containing all datasets for this publication

description: This .zip file contains 10 different datasets, which have been split up for each analysis separately, for easier reproducibility. The info.txt file which is included, explains the data contained in each file.
DOI: 10.5061/dryad.3vk16fq/10
title: for Dryad - Lake Kinneret

description: time series data for Lake Kinneret, Israel
DOI: 10.5061/dryad.44hc2/3
title: Daellenbach_etal_Ebalteatus_flight_behaviour

description: Flight behaviour data for the hoverfly Episyrphus balteatus, obtained from tethered flight mills.
DOI: 10.5061/dryad.44hc2/4
title: Daellenbach_etal_Ebalteatus_flight_ability

description: Flight ability of the hoverfly Episyrphus balteatus on tethered flight mills.
DOI: 10.5061/dryad.4bp82rc/2
title: OrdinationData

description: Contains values for each axis in the Principal Coordinates Ordination
DOI: 10.5061/dryad.6642j2s/1
title: Vega_Trejo etal_MaternalPaternalfish_Dryad

description: Data from What happens to offspring when parents are inbred, old or had a poor start in life? Evidence for sex-specific parental effects, Vega-Trejo, Regina, Kruuk, Loeske, Jennions, Michael, Head, Megan. Raw data in sheet 1 and labels in sheet 2.
DOI: 10.5061/dryad.7s6vh7p/1
title: Leaf Out in Experimental Gardens

description: This file includes the data on day of year of first leaf out for reciprocal transplants in experimental gardens. 'Site' is the colloquial name for site, while 'Garden' describes the elevation of each site (ie Paradise is our colloquial name for the Low Elevation site). 'Dinosaur Egg' as a Site and 'Dinosaur' as a Provenance are referring to the same Mid-Elevation location where we both sourced plants and constructed an experimental garden.
DOI: 10.5061/dryad.7s6vh7p/2
title: Common Gardens and Control Plots

description: This file contains data on leaf out phenology and mean spring temperatures observed in local transplants and control plants (not transplanted) in our study. Temperatures were recorded by ibuttons located in the gardens and in adjacent control plots.
DOI: 10.5061/dryad.81k9m23/1
title: Gelsemium phenotypic selection data

description: This data file contains floral and resistance traits, plant reproduction, pollination, nectar robbing, and florivory for plants from 16 sites (8 urban and 8 non-urban).
DOI: 10.5061/dryad.9043m48/1
title: HauberetalDryadDataJAB2018Final

description: Data used to generate the analyses and figures in our paper.
DOI: 10.5061/dryad.9v017mr/1
title: Female fitness data

description: The data are provided as a .csv file. Each row reports, for a given replicate, the survival (as a proportion) of the 35 females in that replicate and the average fecundity of 10 randomly chosen surviving females from that replicate. Total_fitness is the product of these. Females were low or high quality (Quality) and experienced low or high exposure to males (Male_exposure) in either a simple or complex mating environment (Environment). The experiment was performed in two blocks.
DOI: 10.5061/dryad.c003f8c/1
title: Sampling locations and mitogenome genotypes of killer whales in the western North Pacific

description: This file contains the mitogenome genotypes, ecotypes and geographic coordinates (latitude and longitude) of sampling locations for the killer whale samples analysed in this study.
DOI: 10.5061/dryad.cj3315s/1
title: Data for Rapkin et al 2018

description: Genotype, feeding and lipid data for Rapkin et al 2018 "Genotype-by-sex-by-diet interactions for nutritional preference, dietary consumption and lipid deposition in a field cricket". Data includes Sire, Dam, Sex and Diet Pair. Cricket body size (mm), total eaten (mg), total preference (calculated as total protein/total carbohydrate) and lipid mass (mg).
DOI: 10.5061/dryad.f1s76f2/12
title: Col2a1-CreERT2/R26DTA mouse embryo E17.5

description: Col2a1-CreERT2/R26DTA mouse embryo injected with 2.5 mg tamoxifen at E12.5 and analysed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/13
title: Heterozygous INV(-500-C1) mouse embryo E17.5

description: Heterozygous inversion of the genomic region INV(-500-C1) analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/14
title: Homozygous INV(-500-C1) E17.5

description: Homozygous inversion of the genomic region INV(-500-C1) analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/15
title: Heterozygous (DEL-90-C2) embryo E17.5

description: Heterozygous deletion of the genomic region (DEL-90-C2) analyzed at embryonic day E17.5
DOI: 10.5061/dryad.f1s76f2/19
title: Six1, Six4, double knockout E18.5

description: Six1, Six4, double knockout analyzed at embryonic day E18.5
DOI: 10.5061/dryad.f1s76f2/8
title: mouse control embryo E16.5

description: mouse control embryo analyzed at embryonic day E16.5
DOI: 10.5061/dryad.fg14s2r/1
title: Charnia masoni Holotype RTI

description: Supplementary Figure 1: Reflectance transformation image of the Charnia masoni holotype (LEIUG 2328).
DOI: 10.5061/dryad.fm23dq6/1
title: Meinekeetal_2018_JOE_Dryadsubmission

description: Each row in this file represents an herbarium specimen. For each specimen, associated herbivory data and climatic metadata are included.
DOI: 10.5061/dryad.g663p2b/1
title: Thalassa testudinum genet genotypes

description: Genepop infile for Thalassia testudinum genet genotypes.
DOI: 10.5061/dryad.nf45q26/1
title: ME_GC_Dryad

description: These are the data from the growth chamber experiment.
DOI: 10.5061/dryad.nf45q26/2
title: ME_field_Dryad

description: These are the data from the field experiment.
DOI: 10.5061/dryad.nk33c06/2
title: Plot_coverage_Structure

description: Plant covers of each plot of each transect in clay lick and non clay lick areas
DOI: 10.5061/dryad.nk33c06/3
title: Plot_Trees_Structure

description: Strucutural attributes of individuals of each plot of each transect in clay lick and non clay lick areas
DOI: 10.5061/dryad.pk5n1p4/1
title: Decomposition rates, litter traits, and abiotic and biotic soil properties

description: Data from field experiment on litter decomposition in crop rotation with cover crops (2014-2015), including chemical litter traits (C, N, lignin), mass loss en decomposition rates of winter cover crop litter and standard substrates (filter paper, bamboo, green tea, rooibos tea). Data presented by litterbag and by plot. Soil properties include: mineral N, potential N mineralisation, soil organic matter, soil pH, and also concentrations of PLFA markers and ergosterol. Daily averages of soil temperature and moisture present for limited number of plots. Names of cover crops abbreviated as follows: Lolium perenne (Lope), Trifolium repense (Trre), Raphanus sativus (Rasa), Vicia sativa (Visa). Main crops: Avena sativa (Avsa), Cichorium endivia (Cien).
DOI: 10.5061/dryad.qt8s031/1
title: Behavioural dataset

description: This file includes all the behavioural information of each cod individual
DOI: 10.5061/dryad.qt8s031/2
title: Novel object test - scores

description: This file contains the scores from the novel object test
DOI: 10.5061/dryad.qt8s031/3
title: Open field test - scores

description: This file contains the scores from the open-field test
DOI: 10.5061/dryad.qt8s031/4
title: Mirror-stimulation test scores

description: This file contains the scores frmom the mirror-stimulation test
DOI: 10.5061/dryad.rn0198d/1
title: DNA methylation data

description: DNA methylation dataset for all Bechstein's bats of known age with data from duplicates and stool samples
DOI: 10.5061/dryad.rn0198d/2
title: Mbechsteinii_Epigenetics

description: R script used for the data analysis (linear regression, multiple linear regression, LOOCV).
DOI: 10.5061/dryad.s85s9/1
title: Data Table 1 CDS list

description: Data Table 1: List of all CDS transcripts with read numbers per sample. Only entries with read counts 8 or higher in at least one tissue. Includes three Tabs, one for each population. Each population is represented by four individuals. Sample designations and underlying ready numbers are listed in the first tab of the table.
DOI: 10.5061/dryad.s85s9/2
title: Data Table 2 NC list

description: Data Table 1: List of all CDS transcripts with read numbers per sample. Only entries with read counts 8 or higher in at least one tissue. Includes three Tabs, one for each population. Each population is represented by four individuals. Sample designations and underlying ready numbers are listed in the first tab of the table.
DOI: 10.5061/dryad.s85s9/3
title: Data Table 3 INT list

description: Data Table 3: List of all INT transcripts with read numbers per sample. Only entries with read counts 8 or higher in at least one tissue. Includes three Tabs, one for each population. Each population is represented by four individuals. Sample designations and underlying ready numbers are listed in the first tab of the file.
DOI: 10.5061/dryad.s85s9/4
title: Data Table 4 - Assignments for MCA analysis

description: Data Table 4: List of all transcripts with expression category assignment per population for MCA analysis.
DOI: 10.5061/dryad.10bb924/1
title: Raw data for seed dispersal
DOI: 10.5061/dryad.1rq65qn/2
title: Wagner et al_PLOSone_Pheromone Emitter Data

description: All data reported in the manuscript is contained in this single Excel file. Detailed descriptions of the column headings are provided on each page.