cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2zsmv5
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypotrigona braunsii"
 ]
}

 The dataset includes 96 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017331-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8b95q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brinkmannia mediterranea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017332-251025141854904/datasets/export for details.
DOI: 10.15468/dl.394pbq
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "VerbatimScientificName is Tamarix androssowii",
 "Year 1000-2025"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017333-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvcetq
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leopardus wiedii",
 "Country is Mexico",
 "Year is greater than or equal to 1700",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Unknown evidence)"
 ]
 }
 }
 ]
}

 The dataset includes 510 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017334-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc63dqd
title: CCDC 182023: Experimental Crystal Structure Determination

description: Related Article: N.F.Curtis, O.P.Gladkikh|2000|Aust.J.Chem.|53|597|doi:10.1071/CH00007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc63gd4
title: CCDC 182075: Experimental Crystal Structure Determination

description: Related Article: N.F.Curtis, O.P.Gladkikh, S.L.Heath, K.R.Morgan|2000|Aust.J.Chem.|53|577|doi:10.1071/CH99177
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc63gf5
title: CCDC 182076: Experimental Crystal Structure Determination

description: Related Article: N.F.Curtis, O.P.Gladkikh, S.L.Heath, K.R.Morgan|2000|Aust.J.Chem.|53|577|doi:10.1071/CH99177
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.w3fxuu
title: Occurrence Download

description: A dataset containing 4297 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Persicaria nepalensis, Persicaria nepalensis)",
 "DecimalLatitude is greater than or equal to 0"
 ]
}

 The dataset includes 4297 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017335-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7yp9t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drepanophoriella histriana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017336-251025141854904/datasets/export for details.
DOI: 10.15468/dl.gbfhms
title: Occurrence Download

description: A dataset containing 2607 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liotrigona"
 ]
}

 The dataset includes 2607 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017337-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r86za8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drepanophorus massiliensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017340-251025141854904/datasets/export for details.
DOI: 10.15468/dl.wxck95
title: Occurrence Download

description: A dataset containing 63677658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 63677658 records from 1942 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017279-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6glldth
title: Codebook for Manuscript on Developing LAI PrEP Campaign for Latino MSM

description: Enclosed is the codebook used to code Latino MSM focus group transcripts.
DOI: 10.5281/zenodo.17944438
title: Spatially Resolved Synchrotron X-ray Tomography and Diffraction of Cryogenic Natron and Fluid Inclusions in a Frozen Na-Cl-CO3 Solution

description: This dataset contains full-field reconstructed synchrotron X-ray computed microtomography (µCT) and spatially resolved X-ray diffraction (XRD) data of a frozen Na-Cl-CO3 solution. The data reveals the microstructure of the ice, the presence of cryogenic natron Na-Cl-CO3, and the entrapment of primary fluid inclusions within the salt crystals.

Sample Preparation:

An aqueous solution of 1.0 m NaCl and 0.5 m Na2CO3 was loaded into a 1 mm Kapton capillary. The sample was cooled from 268 K to 205 K at a rate of 6 K/min.

Data Collection (K11-DIAD, Diamond Light Source):





Tomography (43992.tiff): 1005 projections collected over 180 degrees at 20 keV with a 0.1 s exposure (PCO Edge 5.5). The detector was binned 2x, resulting in a pixel resolution of 2.16 µm. Reconstructed using ASTRA-Toolbox/SAVU.




Diffraction (k11-43994_processed.nxs): A 10x10 spatially correlated grid scan using a 25 x 25 µm micro-focused beam (20 keV) collected on a Pilatus 2M (15 s exposure).



New data (V2):

We have ammended this entry to include the training data, labelled data and output model constructed using the Volume Segmantics Package (https://doi.org/10.21105/joss.04691).

The training data consists of tif stacks containing the raw and labelled volumes of 256x256x256 pixels (43902_raw.tif, 43902_labeled.tif,43906_raw.tif, 43906_labeled.tif, 43908_raw.tif,43908_labeled.tif, 43910_raw.tif, 43910_labeled.tif, 43992_raw.tif, 43992_labeled.tif.). This data represents sequential tomographies of the same region in the sample at different temperatures.

The yaml file containing the model training characteristics for Volume Segmantics (2d_model_train_settings.yaml)

This dataset also includes the final trained UNET pytorch model (2024-10-25_U_NET_PLUS_PLUS__model.pytorch). This model was trained using the VolumeSegmantics package. Details published (https://doi.org/10.21105/joss.04691).

This data supports the findings in the manuscript "Fluid inclusions in natron - a window into the interior of Enceladus".
DOI: 10.5281/zenodo.18702084
title: Spatially Resolved Synchrotron X-ray Tomography and Diffraction of Cryogenic Natron and Fluid Inclusions in a Frozen Na-Cl-CO3 Solution

description: This dataset contains full-field reconstructed synchrotron X-ray computed microtomography (µCT) and spatially resolved X-ray diffraction (XRD) data of a frozen Na-Cl-CO3 solution. The data reveals the microstructure of the ice, the presence of cryogenic natron Na-Cl-CO3, and the entrapment of primary fluid inclusions within the salt crystals.

Sample Preparation:

An aqueous solution of 1.0 m NaCl and 0.5 m Na2CO3 was loaded into a 1 mm Kapton capillary. The sample was cooled from 268 K to 205 K at a rate of 6 K/min.

Data Collection (K11-DIAD, Diamond Light Source):





Tomography (43992.tiff): 1005 projections collected over 180 degrees at 20 keV with a 0.1 s exposure (PCO Edge 5.5). The detector was binned 2x, resulting in a pixel resolution of 2.16 µm. Reconstructed using ASTRA-Toolbox/SAVU.




Diffraction (k11-43994_processed.nxs): A 10x10 spatially correlated grid scan using a 25 x 25 µm micro-focused beam (20 keV) collected on a Pilatus 2M (15 s exposure).



New data (V2):

We have ammended this entry to include the training data, labelled data and output model constructed using the Volume Segmantics Package (https://doi.org/10.21105/joss.04691).

The training data consists of tif stacks containing the raw and labelled volumes of 256x256x256 pixels (43902_raw.tif, 43902_labeled.tif,43906_raw.tif, 43906_labeled.tif, 43908_raw.tif,43908_labeled.tif, 43910_raw.tif, 43910_labeled.tif, 43992_raw.tif, 43992_labeled.tif.). This data represents sequential tomographies of the same region in the sample at different temperatures.

The yaml file containing the model training characteristics for Volume Segmantics (2d_model_train_settings.yaml)

This dataset also includes the final trained UNET pytorch model (2024-10-25_U_NET_PLUS_PLUS__model.pytorch). This model was trained using the VolumeSegmantics package. Details published (https://doi.org/10.21105/joss.04691).

This data supports the findings in the manuscript "Fluid inclusions in natron - a window into the interior of Enceladus".
DOI: 10.15468/dl.a3tnx4
title: Occurrence Download

description: A dataset containing 3231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Inga edulis"
 ]
}

 The dataset includes 3231 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030004-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31370878
title: Supplementary Material for: Immune Deposits, Complement Activation and APOL1 Risk variants in Focal Segmental Glomerulosclerosis

description: Background: The role of immune deposits and complement activation in APOL1 mediated focal segmental glomerulosclerosis (FSGS) remains unclear. Using the CureGN cohort, we examined the associations between APOL1 renal risk variants (RRVs), glomerular immune deposits, and urinary complement activation.
Methods: We analyzed glomerular IgG, IgM and C3 deposition, kidney biopsy findings, urinary membrane attack complex (sC5b9) levels and clinical data in FSGS patients, regardless of race. Study participants patients were categorized as high-risk (two RRVs) or low risk (zero to one RRV). 
Results: Of 175 participants, 148 (84%) had genetic testing, among whom 31 were high-risk and 117 were low-risk participants. High-risk participants had a higher prevalence of collapsing FSGS (45% vs 11%, p&lt;0.001) and mesangial IgG deposition (intensity&gt;0) (32% vs 3%, p&lt;0.001). Incident participants enrolled within 6 months of biopsy showed a trend toward higher urinary sC5b9 to protein ratio in high-risk participants [0.15 (0.08-0.31) vs 0.03 (0-0.20) μg/g, p=0.09]. IgG staining correlated with urinary sC5b9 levels (r=0.34, p=0.008), suggesting a link between IgG deposition and urinary membrane attack complex excretion. 
Conclusions: APOL1 high-risk FSGS is associated with mesangial IgG deposition and increased urinary membrane attack complex levels, implicating immune-mediated mechanisms in FSGS pathogenesis.
DOI: 10.6084/m9.figshare.31370878.v1
title: Supplementary Material for: Immune Deposits, Complement Activation and APOL1 Risk variants in Focal Segmental Glomerulosclerosis

description: Background: The role of immune deposits and complement activation in APOL1 mediated focal segmental glomerulosclerosis (FSGS) remains unclear. Using the CureGN cohort, we examined the associations between APOL1 renal risk variants (RRVs), glomerular immune deposits, and urinary complement activation.
Methods: We analyzed glomerular IgG, IgM and C3 deposition, kidney biopsy findings, urinary membrane attack complex (sC5b9) levels and clinical data in FSGS patients, regardless of race. Study participants patients were categorized as high-risk (two RRVs) or low risk (zero to one RRV). 
Results: Of 175 participants, 148 (84%) had genetic testing, among whom 31 were high-risk and 117 were low-risk participants. High-risk participants had a higher prevalence of collapsing FSGS (45% vs 11%, p&lt;0.001) and mesangial IgG deposition (intensity&gt;0) (32% vs 3%, p&lt;0.001). Incident participants enrolled within 6 months of biopsy showed a trend toward higher urinary sC5b9 to protein ratio in high-risk participants [0.15 (0.08-0.31) vs 0.03 (0-0.20) μg/g, p=0.09]. IgG staining correlated with urinary sC5b9 levels (r=0.34, p=0.008), suggesting a link between IgG deposition and urinary membrane attack complex excretion. 
Conclusions: APOL1 high-risk FSGS is associated with mesangial IgG deposition and increased urinary membrane attack complex levels, implicating immune-mediated mechanisms in FSGS pathogenesis.
DOI: 10.6084/m9.figshare.31370881
title: Supplementary Material for: Burn and Bury: A Novel Technique to Avoid Conjunctival Peritomy

description: Introduction: To evaluate the safety and feasibility of a novel surgical technique for subconjunctival burial of 10-0 Prolene sutures without conjunctival peritomy.
Methods: Retrospective case series of 12 patients who underwent trans-scleral suture fixation or silicone oil retention suture placement using 10-0 Prolene sutures between January 2024 and February 2025 at Sant'Anna University Hospital, University of Ferrara, Italy. Inclusion criteria: adults requiring scleral fixation with 10-0 Prolene. Exclusion criteria: prior conjunctival surgery at the site, active ocular surface disease, or inability to complete follow-up. Instead of conjunctival peritomy, a linear high-temperature cautery was applied along the intended suture path to create a fibrotic track. Sutures were passed trans-scleral and left exposed on the cauterized zone, allowing spontaneous re-epithelialization. Follow-up included slit-lamp examination, anterior segment photography, and optical coherence tomography (AS-OCT) at 1 day, 1 week, 1, 3 and 6 months.
Results: 12 patients (12 eyes) were included. Successful suture burial was achieved in all 12 eyes (100%) without exposure, extrusion, or conjunctival dehiscence during the 6-month follow-up. Re-epithelialization was complete by day 7 in all cases (12/12, 100%). No patient reported foreign body sensation after day 7. There were no infections, granulomas, or surgery revisions.
Conclusions: The “Burn and Bury” technique is a safe, and minimally invasive alternative to conjunctival peritomy for burying trans-scleral Prolene sutures. It preserves conjunctival integrity, reduces surgical trauma, promotes rapid epithelial healing, and enhances patient comfort. This technique may be broadly applicable in anterior segment procedures requiring scleral suture fixation and warrants prospective validation.
DOI: 10.6084/m9.figshare.31370881.v1
title: Supplementary Material for: Burn and Bury: A Novel Technique to Avoid Conjunctival Peritomy

description: Introduction: To evaluate the safety and feasibility of a novel surgical technique for subconjunctival burial of 10-0 Prolene sutures without conjunctival peritomy.
Methods: Retrospective case series of 12 patients who underwent trans-scleral suture fixation or silicone oil retention suture placement using 10-0 Prolene sutures between January 2024 and February 2025 at Sant'Anna University Hospital, University of Ferrara, Italy. Inclusion criteria: adults requiring scleral fixation with 10-0 Prolene. Exclusion criteria: prior conjunctival surgery at the site, active ocular surface disease, or inability to complete follow-up. Instead of conjunctival peritomy, a linear high-temperature cautery was applied along the intended suture path to create a fibrotic track. Sutures were passed trans-scleral and left exposed on the cauterized zone, allowing spontaneous re-epithelialization. Follow-up included slit-lamp examination, anterior segment photography, and optical coherence tomography (AS-OCT) at 1 day, 1 week, 1, 3 and 6 months.
Results: 12 patients (12 eyes) were included. Successful suture burial was achieved in all 12 eyes (100%) without exposure, extrusion, or conjunctival dehiscence during the 6-month follow-up. Re-epithelialization was complete by day 7 in all cases (12/12, 100%). No patient reported foreign body sensation after day 7. There were no infections, granulomas, or surgery revisions.
Conclusions: The “Burn and Bury” technique is a safe, and minimally invasive alternative to conjunctival peritomy for burying trans-scleral Prolene sutures. It preserves conjunctival integrity, reduces surgical trauma, promotes rapid epithelial healing, and enhances patient comfort. This technique may be broadly applicable in anterior segment procedures requiring scleral suture fixation and warrants prospective validation.
DOI: 10.5281/zenodo.18140894
title: Dataset for Detecting Lifshitz Transitions Using Nonlinear Conductivity in Bilayer Graphene

description: This is the reproduction dataset for Detecting Lifshitz Transitions Using Nonlinear Conductivity in Bilayer Graphene. The data and the corresponding readme files are provided as .zip file.
DOI: 10.5281/zenodo.18108899
title: Dataset for Detecting Lifshitz Transitions Using Nonlinear Conductivity in Bilayer Graphene

description: This is the reproduction dataset for Detecting Lifshitz Transitions Using Nonlinear Conductivity in Bilayer Graphene. The data and the corresponding readme files are provided as .zip file.
DOI: 10.57903/uj/gqgxfr
title: Code for estimating the trajectory of a point mass elastically driven across a crystallographic point defect

description: Code used for the preparation of Fig. 2 and Fig. 3 in the manuscript.
DOI: 10.25824/redu/i5krgj
title: Dados relativos à pesquisa “Representações de ciências e cientistas em séries animadas: uma investigação fundamentada na natureza das ciências”

description: Os dados contidos nos documentos anexados referem-se à pesquisa apresentada na tese em formato alternativo intitulada "Representações de ciências e cientistas em séries animadas: uma investigação fundamentada na Natureza das Ciências", defendida em 2025 no Programa de Pós-graduação Multiunidades em Ensino de Ciências e Matemática (PECIM) da Universidade Estadual de Campinas (Unicamp). Estão disponíveis os dados referentes à: 1) revisão sistemática da literatura acadêmica sobre o tema "representações de ciências e cientistas em séries animadas"; 2) identificação de quais séries animadas e respectivos personagens cientistas tiveram essas representações analisadas na literatura acadêmica, assim como quais características da Natureza das Ciências (NdC) foram abordadas nessas análises; e 3) construção dos quadros que sintetizam os principais aspectos epistêmicos e não-epistêmicos da NdC, segundo referenciais que trabalham com a abordagem consensual da NdC e com os aspectos sociais envolvidos na construção e comunicação das ciências. As sínteses das metodologias de coleta e processamento dos dados para cada caso são apresentadas no corpo dos documentos anexados.
DOI: 10.5281/zenodo.18702512
title: LINF_330032200

description: CDC45-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18702513
title: LINF_330032200

description: CDC45-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.57903/uj/92kfva
title: Surface modification of polyurethane biomaterials by ammonia plasma: bacterial adhesion and cellular response - research data

description: In this study, polyurethane biomaterials were modified using low-temperature ammonia plasma to improve their surface properties for biomedical applications. The treatment introduced amine groups, enhanced surface hydrophilicity, and altered surface polarity without affecting topography. Surface characterization was performed using X-ray photoelectron spectroscopy (XPS), water contact angle measurements, and atomic force microscopy (AFM). The impact of surface modification on bacterial adhesion was assessed using reference strains Pseudomonas aeruginosa DSM 22644, Staphylococcus epidermidis DSM 28319, Staphylococcus aureus DSM 4910, and Escherichia coli DSM 18039. While E. coli adhesion remained unchanged, significantly increased adhesion was observed for P. aeruginosa and S. epidermidis on modified surfaces. At the same time, biocompatibility analysis using A549 cells showed enhanced cell adhesion, spreading, and cytoskeletal organization, confirmed by increased Focal Adhesion Kinase (FAK) expression. The findings demonstrate that ammonia plasma treatment improves cellular compatibility but may promote adhesion of certain bacterial strains, underlining the need to balance antimicrobial resistance and biocompatibility when designing polyurethane-based biomedical materials.
DOI: 10.15468/dl.d2r6n5
title: Occurrence Download

description: A dataset containing 2414 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ministrymon leda"
 ]
}

 The dataset includes 2414 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030007-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18133210
title: Dataset for Second‐Order Synaptic Memory using Inherent Plasticity of Moiré Superlattices

description: This is the reproduction dataset for Second‐Order Synaptic Memory using Inherent Plasticity of Moiré Superlattices. The data and the corresponding readme files are provided as a .zip file.
DOI: 10.5281/zenodo.18133211
title: Dataset for Second‐Order Synaptic Memory using Inherent Plasticity of Moiré Superlattices

description: This is the reproduction dataset for Second‐Order Synaptic Memory using Inherent Plasticity of Moiré Superlattices. The data and the corresponding readme files are provided as a .zip file.
DOI: 10.5281/zenodo.14783746
title: DNA_Tiles_intracellular
DOI: 10.5281/zenodo.14783745
title: DNA_Tiles_intracellular
DOI: 10.5281/zenodo.18702496
title: Iron Deficiency Anemia in Pregnancy in Northern Asir, Saudi Arabia
DOI: 10.5281/zenodo.17679762
title: Iron Deficiency Anemia in Pregnancy in Northern Asir, Saudi Arabia