cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2kbbva
title: Occurrence Download

description: A dataset containing 2352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lathyrus niger, Orobus niger)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 2352 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008362-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsg5uu
title: Occurrence Download

description: A dataset containing 1486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Paraxerus cepapi",
 "Year 2015-2025"
 ]
}

 The dataset includes 1486 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008364-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29816759
title: Alignment of mitochondrial genome, control region sequences and ND4 gene sequences of Crocodiles

description: This study investigates the population structure, history, and phylogenetic relationships of <i>Crocodylus porosus</i> and related species, including the extinct Seychelles crocodile. We sequenced mitochondrial genomes from several crocodile museum specimens and combined them with genetic data from modern samples to analyse the population structure of the saltwater crocodile, <i>Crocodylus porosus</i>, understand its history, and clarify the identity of the extinct Seychelles crocodile. We also examined the taxonomic status of the southern population of <i>Crocodylus novaeguineae </i>and sequenced the mitochondrial genomes of eleven museum specimens of <i>C. porosus, C. niloticus, C. palustris</i>, and <i>C. novaeguineae</i>, including the extinct Seychelles crocodile, for phylogenetic analysis of all <i>Crocodylus</i> species. Additionally, we analysed the mitochondrial control region for 187 and the ND4 region for 13 saltwater crocodiles across most of the species' range.
DOI: 10.6084/m9.figshare.29816759.v1
title: Alignment of mitochondrial genome, control region sequences and ND4 gene sequences of Crocodiles

description: This study investigates the population structure, history, and phylogenetic relationships of <i>Crocodylus porosus</i> and related species, including the extinct Seychelles crocodile. We sequenced mitochondrial genomes from several crocodile museum specimens and combined them with genetic data from modern samples to analyse the population structure of the saltwater crocodile, <i>Crocodylus porosus</i>, understand its history, and clarify the identity of the extinct Seychelles crocodile. We also examined the taxonomic status of the southern population of <i>Crocodylus novaeguineae </i>and sequenced the mitochondrial genomes of eleven museum specimens of <i>C. porosus, C. niloticus, C. palustris</i>, and <i>C. novaeguineae</i>, including the extinct Seychelles crocodile, for phylogenetic analysis of all <i>Crocodylus</i> species. Additionally, we analysed the mitochondrial control region for 187 and the ND4 region for 13 saltwater crocodiles across most of the species' range.
DOI: 10.15468/dl.g4hu3f
title: Occurrence Download

description: A dataset containing 1257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lathyrus palustris, Lathyrus palustris, Lathyrus palustris)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1257 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008365-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axd3qh
title: Occurrence Download

description: A dataset containing 15069368 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= 41) AND 
 ("decimallatitude" &lt; 91) AND 
 ("decimallongitude" &gt;= -76) AND 
 ("decimallongitude" &lt; -75) AND 
 ("year" &lt;= 2025)

 The dataset's 15069368 records were derived from 733 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008341-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgky5z
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Copris incertus"
 ]
}

 The dataset's 3 records were derived from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008338-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shxffg
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Votomita guianensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 52 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008367-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdg65p
title: Occurrence Download

description: A dataset containing 25504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leontodon autumnalis, Leontodon autumnalis, Scorzoneroides autumnalis)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 25504 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008368-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhmpg6
title: Occurrence Download

description: A dataset containing 11918633 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= 41) AND 
 ("decimallatitude" &lt; 91) AND 
 ("decimallongitude" &gt;= -75) AND 
 ("decimallongitude" &lt; -74) AND 
 ("year" &lt;= 2025)

 The dataset's 11918633 records were derived from 727 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008345-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15597133
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605a Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605a Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15597134
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605a Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605a Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5066/p144rsef
title: Data Release: Long-term production trends in Taxodium distichum swamps at their northern extreme in the Mississippi River Alluvial Valley: Water depth data for Crawford Tract, Illinois

description: These data track water depths in Crawford Tract, Illinois from May 5, 2023 to April 23, 2024.
DOI: 10.15468/dl.7gfrxm
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Dalbergia hiemalis Malme"
 ]
}

 The dataset includes 23 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014658-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16911390
title: SARS-CoV-2 Sequenzdaten aus Deutschland

description: Ein zentraler Bestandteil einer erfolgreichen Erregersurveillance ist das Verständnis der Verbreitung eines Erregers sowie seiner pathogenen Eigenschaften. Hierbei stellt das Wissen über das Erregergenom eine wichtige Informationsquelle dar. So erlaubt der Nachweis von Mutationen im Genom eines Erregers, Verwandtschaftsbeziehungen zu rekonstruieren, Übertragungswege aufzudecken und Resistenzen vorherzusagen. Die Integrierte Genomische Surveillance (IGS) von SARS-CoV-2 zielt darauf ab, die Verbreitung des Virus und insbesondere von besorgniserregenden Virusvarianten in der Bevölkerung zu überwachen sowie auftretende Veränderungen des Virus genau zu beobachten. Besondere Bedeutung kommt dabei der öffentlichen Bereitstellung der genomischen Daten zu, um Wissenschaftlern in Deutschland und weltweit die Möglichkeit zu eigenständigen Analysen zu eröffnen.  Im Rahmen der Coronavirus-Surveillanceverordnung wurden bis zum 31.05.2023 SARS-CoV-2 Sequenzdaten aus ganz Deutschland über den Deutschen Elektronischen Sequenzdaten-Hub (DESH) an das RKI übermittelt. Mit Ablauf der Verordnung werden künftig Proben durch das IMSSC2 Labornetzwerk bereitgestellt und am RKI sequenziert, analysiert und hier bereitgestellt. Trotz reduzierter  Probenanzahl, wird durch die sorgfältige Auswahl der beteiligten Labore ein repräsentativer Einblick in die Viruspopluation gesichert (Djin Ye Oh  et al. 2022). Zusätzlich werden Sequenzen vom NRZ Coronaviren an der Charité beigetragen um das IMSSC2 Netzwerk zu ergänzen.
DOI: 10.15468/dl.8th5kt
title: Occurrence Download

description: A dataset containing 6992 records in GBIF matching the query:
SELECT
 '458' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 41.89415215079384
 AND decimalLatitude &lt;= 46.479780028101516
 AND decimalLongitude &gt;= 137.86371930433822
 AND decimalLongitude &lt;= 151.065554203109
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 6992 records were derived from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001567-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.j00167.00046
title: BSN: Light Curve Modeling and Orbital Evolution of the Total-eclipse Contact Binary EZ Oct
title: BSN: Light Curve Modeling and Orbital Evolution of the Total-eclipse Contact Binary EZ Oct

description: The observational data and extracted minima are accessible in the online supplementary files
description: The observational data and extracted minima are accessible in the online supplementary files
DOI: 10.15468/dl.c8s7kk
title: Occurrence Download

description: A dataset containing 11303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Panicum repens"
 ]
}

 The dataset includes 11303 records from 408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001581-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfqbac
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cabo Verde",
 "TaxonKey is Pennatulacea"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001582-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31204255
title: Supplementary Material for: Morphometric and functional evaluation of non-renal vasculature in female and male PKD/Mhm (Cy/+) Rats

description: Background: Polycystic kidney disease (PKD) is a genetic disorder characterized by renal enlargement due to cyst formation. Besides cystic complications, patients with autosomal dominant PKD (ADPKD) can develop vascular abnormalities. We investigated the impact of ADPKD on aortic morphometry and function in female and male PKD rats.
Method: Thoracic aortic rings were obtained from six-month-old female (n=10; 307±4g) and male (n=10; 470±24g) PKD/Mhm (Cy/+) rats, as well as age-matched control-female (n=9; 312±6g) and control-male (+/+) (n=13; 460±14g) rats. Vascular function was evaluated ex vivo using organ baths. Biomarkers of renal function were evaluated and histology was performed. 
Results: PKD-female and PKD-male rats showed elevated serum creatinine levels compared to their respective controls (PKD-female: 50.0±1.7μmol/L vs. control-female: 43.9±2.1μmol/L; PKD-male: 178.7±21.0μmol/L vs. control-male: 40.4±1.3μmol/L, p&lt;0.05), and that in the PKD-males were found to be higher in the PKD-males than in the PKD-females (p&lt;0.0001). Endothelial dysfunction, characterized by reduced maximum relaxation to acetylcholine was observed in the PKD-males compared to control-males (55±2% vs. 77±1%, p&lt;0.05). Additionally, contractile responses to phenylephrine and high potassium were decreased in PKD-male compared to control-male. Morphometric analysis revealed increased wall thickness, wall cross-sectional area normalized to body weight, and wall: lumen area ratio in PKD-male aortas compared to control-male. Additionally, PKD-male showed increased cleaved poly(ADP-Ribose)-polymerase-1 immunoreactivity compared to control-males. All these parameters were unchanged in PKD-females compared to control-females.
Conclusion: Six-month-old male rats with PKD, but not females, display endothelial dysfunction, impaired smooth muscle contraction/relaxation, pathological changes in aortic morphometry, and increased apoptosis, providing a model for studying vascular complications in ADPKD.
DOI: 10.6084/m9.figshare.31204255.v1
title: Supplementary Material for: Morphometric and functional evaluation of non-renal vasculature in female and male PKD/Mhm (Cy/+) Rats

description: Background: Polycystic kidney disease (PKD) is a genetic disorder characterized by renal enlargement due to cyst formation. Besides cystic complications, patients with autosomal dominant PKD (ADPKD) can develop vascular abnormalities. We investigated the impact of ADPKD on aortic morphometry and function in female and male PKD rats.
Method: Thoracic aortic rings were obtained from six-month-old female (n=10; 307±4g) and male (n=10; 470±24g) PKD/Mhm (Cy/+) rats, as well as age-matched control-female (n=9; 312±6g) and control-male (+/+) (n=13; 460±14g) rats. Vascular function was evaluated ex vivo using organ baths. Biomarkers of renal function were evaluated and histology was performed. 
Results: PKD-female and PKD-male rats showed elevated serum creatinine levels compared to their respective controls (PKD-female: 50.0±1.7μmol/L vs. control-female: 43.9±2.1μmol/L; PKD-male: 178.7±21.0μmol/L vs. control-male: 40.4±1.3μmol/L, p&lt;0.05), and that in the PKD-males were found to be higher in the PKD-males than in the PKD-females (p&lt;0.0001). Endothelial dysfunction, characterized by reduced maximum relaxation to acetylcholine was observed in the PKD-males compared to control-males (55±2% vs. 77±1%, p&lt;0.05). Additionally, contractile responses to phenylephrine and high potassium were decreased in PKD-male compared to control-male. Morphometric analysis revealed increased wall thickness, wall cross-sectional area normalized to body weight, and wall: lumen area ratio in PKD-male aortas compared to control-male. Additionally, PKD-male showed increased cleaved poly(ADP-Ribose)-polymerase-1 immunoreactivity compared to control-males. All these parameters were unchanged in PKD-females compared to control-females.
Conclusion: Six-month-old male rats with PKD, but not females, display endothelial dysfunction, impaired smooth muscle contraction/relaxation, pathological changes in aortic morphometry, and increased apoptosis, providing a model for studying vascular complications in ADPKD.
DOI: 10.6084/m9.figshare.31204258
title: Supplementary Material for: Perianal Rhabdomyosarcoma Mimicking Perianal Abscess: Case Report and Literature Review

description: Introduction
Perianal rhabdomyosarcoma (RMS) is an exceedingly rare and aggressive soft tissue malignancy that can mimic benign conditions, such as perianal abscesses, which complicates its diagnosis and treatment. This study reports a case of perianal RMS and discusses the management approach and the challenges in diagnosis.
Presentation of case
A 26-year-old woman with a past medical history of breast cancer, treated with partial mastectomy, chemotherapy, and radiation therapy, presented with a recurrent perianal mass initially drained multiple times for presumed abscesses. Upon further evaluation, physical examination revealed a 7 cm perianal wound with purulent and bloody discharge. Imaging studies revealed a lobulated mass in the perineal area with involvement of the anus. Biopsy confirmed the diagnosis of alveolar RMS (ARMS). The patient was treated with six cycles of neoadjuvant chemotherapy, followed by excisional biopsy. The tumor was resected with clear margins and Immunohistochemical (IHC) analysis confirmed the diagnosis. Adjuvant chemotherapy was initiated, and the patient remains asymptomatic at six-month follow-up.
Conclusion
 Rhabdomyosarcoma should be considered in the differential diagnosis of perianal masses, especially in cases with recurrence
DOI: 10.6084/m9.figshare.31204258.v1
title: Supplementary Material for: Perianal Rhabdomyosarcoma Mimicking Perianal Abscess: Case Report and Literature Review

description: Introduction
Perianal rhabdomyosarcoma (RMS) is an exceedingly rare and aggressive soft tissue malignancy that can mimic benign conditions, such as perianal abscesses, which complicates its diagnosis and treatment. This study reports a case of perianal RMS and discusses the management approach and the challenges in diagnosis.
Presentation of case
A 26-year-old woman with a past medical history of breast cancer, treated with partial mastectomy, chemotherapy, and radiation therapy, presented with a recurrent perianal mass initially drained multiple times for presumed abscesses. Upon further evaluation, physical examination revealed a 7 cm perianal wound with purulent and bloody discharge. Imaging studies revealed a lobulated mass in the perineal area with involvement of the anus. Biopsy confirmed the diagnosis of alveolar RMS (ARMS). The patient was treated with six cycles of neoadjuvant chemotherapy, followed by excisional biopsy. The tumor was resected with clear margins and Immunohistochemical (IHC) analysis confirmed the diagnosis. Adjuvant chemotherapy was initiated, and the patient remains asymptomatic at six-month follow-up.
Conclusion
 Rhabdomyosarcoma should be considered in the differential diagnosis of perianal masses, especially in cases with recurrence
DOI: 10.6084/m9.figshare.31204261
title: Supplementary Material for: Cardiovascular Adverse Events of JAK vs. TNF Inhibitors using the Korean Pharmacovigilance Database

description: Introduction
Janus kinase inhibitors (JAK-Is), as novel medications, are utilized in treating immune-mediated inflammatory diseases such as rheumatoid arthritis. However, concerns about their cardiovascular safety associated with the use of JAK inhibitors have been increasing in recent years. This study aimed to compare the risk of cardiovascular events (CVEs) in patients taking JAK-Is and tumor necrosis factor alpha inhibitors (TNF-Is) using the Korea Adverse Event Reporting System (KAERS) database.

Methods
Adverse event (AE) reports between January 1, 2015 and December 31, 2020 of JAK-Is (tofacitinib or baricitinib) or TNF-Is (adalimumab, etanercept, or golimumab) were included. CVEs were categorized into major cardiovascular events (MACEs), thrombosis, and other CVEs. The reporting odds ratios (RORs) for outcomes with 95% confidence interval (CIs) were calculated using 2x2 contingency tables. 

Results
A total of 625 AE reports were identified for JAK-I and 4,777 for TNF-Is, resulting in 876 and 7,999 drug-AE pairs, respectively. Disproportionality analysis showed reporting signals suggesting possible associations between JAK-Is and CVEs compared with TNF-Is (ROR: 4.90, 95% CI: 2.80–8.59), with particularly pronounced for thrombosis (ROR: 12.70, 95% CI: 5.10–31.66). These trends were particularly notable in women (CVEs: ROR: 7.52, 95% CI: 3.06-18.47) and in patients over 50 years old (CVEs: ROR: 5.01, 95% CI: 2.02-12.43).

Conclusion
This disproportionality analysis using a national pharmacovigilance database identified reporting signals for total CVEs with JAK-Is compared to TNF-Is; in particular, a significant signal for thrombosis was observed.