cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5873411
title: Gut Microbiome Characteristics in feral and domesticated horses from different geographic locations

description: 31 Abstract 32 Domesticated horses live under different conditions compared with their extinct wild ancestors. While housed, medicated and kept on a restricted source of feed, the microbiota of domesticated horses is hypothesized to be altered. We assessed the fecal microbiome of 57 domestic and feral horses from different locations on three continents, observing geographical differences. A higher abundance of eukaryota (p&lt;0.05) and viruses (p&lt;0.05) and lower of archaea (p&lt;0.05) were found in feral animals when compared with domestic ones. The abundance of genes coding for microbe-produced enzymes involved in the metabolism of carbohydrates was significantly higher (p&lt;0.05) in feral animals regardless of the geographic origin. Differences in the fecal resistomes between both groups of animals were also noted. The domestic/captive horse microbiomes were enriched in genes conferring resistance to tetracycline, likely reflecting the use of this antibiotic in the management of these animals. Our data showed an impoverishment of the fecal microbiome in domestic horses with diet, antibiotic exposure and hygiene being likely drivers. The results offer a view of the intestinal microbiome of horses and the impact of domestication or captivity, which may uncover novel targets for modulating the microbiome of horses to enhance animal health and well-being.
DOI: 10.18112/openneuro.ds003592.v1.0.4
title: Neurocognitive aging data release with behavioral, structural, and multi-echo functional MRI measures
DOI: 10.18112/openneuro.ds003592.v1.0.5
title: Neurocognitive aging data release with behavioral, structural, and multi-echo functional MRI measures
DOI: 10.6073/pasta/7e9444b9b9ad8be100d4f39fc763782d
title: Association of Organic Carbon with Reactive Iron Oxides

description: We used soils provided by the National Ecological Observatory Network (NEON), along with additional samples and data collected from published studies, to characterize Fe-associated C and its relationships with climate and soil physicochemical factors across global mineral soils
DOI: 10.5517/ccdc.csd.cc25fd67
title: CCDC 2008868: Experimental Crystal Structure Determination

description: Related Article: You-Yuan Guo, Hong-Li Yang, Wei Jiang, Cheng-Guo Liu|2021|Ind.J.Heterocycl.Chem.|31|208|
DOI: 10.5281/zenodo.5872661
title: Transcranial Direct Current Stimulation Modulates Cortical Neuronal Activity in Autism - proof of concept study

description: Estatística ABC - ATEC- CGI https://1drv.ms/x/s!As8pqQd3D2wxg512cD_KFH3zKPYp7A?e=If8zoL Dados Clínicos iniciais https://1drv.ms/x/s!As8pqQd3D2wxg5E6ubJ3-eJ3lUB42A?e=4PeGvB Dados EEGs https://1drv.ms/x/s!As8pqQd3D2wxg51znE05imGFyO7J-Q?e=J7UhP3
DOI: 10.5281/zenodo.5872660
title: Transcranial Direct Current Stimulation Modulates Cortical Neuronal Activity in Autism - proof of concept study

description: Estatística ABC - ATEC- CGI https://1drv.ms/x/s!As8pqQd3D2wxg512cD_KFH3zKPYp7A?e=If8zoL Dados Clínicos iniciais https://1drv.ms/x/s!As8pqQd3D2wxg5E6ubJ3-eJ3lUB42A?e=4PeGvB Dados EEGs https://1drv.ms/x/s!As8pqQd3D2wxg51znE05imGFyO7J-Q?e=J7UhP3
DOI: 10.5281/zenodo.5873590
title: SciExpeM - 10.5281/zenodo.5873590

description: Li, Yuyang; Cai, Jianghuai; Zhang, Lidong; Yuan, Tao; Zhang, Kuiwen; Qi, Fei - Proceedings Of The Combustion Institute, 2011, (33), 593-600
DOI: 10.5281/zenodo.5873589
title: SciExpeM - 10.5281/zenodo.5873590

description: Li, Yuyang; Cai, Jianghuai; Zhang, Lidong; Yuan, Tao; Zhang, Kuiwen; Qi, Fei - Proceedings Of The Combustion Institute, 2011, (33), 593-600
DOI: 10.5281/zenodo.5873594
title: SciExpeM - 10.5281/zenodo.5873594

description: Li, Yuyang; Cai, Jianghuai; Zhang, Lidong; Yuan, Tao; Zhang, Kuiwen; Qi, Fei - Proceedings Of The Combustion Institute, 2011, (33), 593-600
DOI: 10.5281/zenodo.5873593
title: SciExpeM - 10.5281/zenodo.5873594

description: Li, Yuyang; Cai, Jianghuai; Zhang, Lidong; Yuan, Tao; Zhang, Kuiwen; Qi, Fei - Proceedings Of The Combustion Institute, 2011, (33), 593-600
DOI: 10.5281/zenodo.5347696
title: Plots of metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC

description: The plots of metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC
DOI: 10.5281/zenodo.5347695
title: Plots of metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC

description: The plots of metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC
DOI: 10.5281/zenodo.5343166
title: All metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC

description: All metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC
DOI: 10.5281/zenodo.5343165
title: All metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC

description: All metrics from the regridding benchmark with SCRIP, XIOS,ESMF and YAC
DOI: 10.6084/m9.figshare.18622097
title: BT-CC_Data_alltrials.csv

description: Data For:<b>Shifting thermal regimes influence competitive feeding and aggression dynamics of brook trout (<i>Salvelinus fontinalis</i>) and creek chub (<i>Semotilus atromaculatus</i>).</b><br><br>The natural distributions of freshwater fish species are limited by their thermal tolerances, both by physiological constraints and increased interspecific competition as temperatures shift toward the thermal optima of other syntopic species. Species may mediate stress from temperature change physiologically, behaviorally, or both; but these changes may compromise competitive advantages through effects on feeding and social behavior. In the Appalachian Mountains of North America, creek chub (<i>Semotilus atromaculatus</i>) are found in warm-water and cold-water streams and overlap in range with brook trout (<i>Salvelinus fontinalis</i>) across lower thermal maxima, where they compete for food and space. As stream temperatures continue to increase due to climate change, brook trout are under increasing thermal stress which may negatively affect their ability to compete with creek chub. To examine the influences of temperature on competitive interactions between these species, we observed feeding behavior, aggression, and habitat use differences at three temperatures approaching brook trout thermal maxima (18°C, 20°C, and 22°C) among dyad pairs for all combinations of species in experimental flow-through tanks. We also examined feeding and habitat use of both species under solitary conditions. We found as temperature increased, feeding and aggression of brook trout was significantly reduced in the presence of creek chub. Creek chub pairs were more likely to occupy benthic areas and refugia while brook trout pairs used surface water more. Space use patterns significantly changed by temperature and pairing treatment. Aggression and space use shifts allowed increased exploitative and interference competition from creek chub when paired with brook trout that was not present in conspecific pairs. The decreased dominance of a top predator may lead to diverse impacts on stream community dynamics with implications for the future range restriction of brook trout and demonstrate possible mechanisms to facilitate competitive advantages of warm water generalist species under thermal stress.<br>
DOI: 10.6084/m9.figshare.18622097.v1
title: BT-CC_Data_alltrials.csv

description: Data For:<b>Shifting thermal regimes influence competitive feeding and aggression dynamics of brook trout (<i>Salvelinus fontinalis</i>) and creek chub (<i>Semotilus atromaculatus</i>).</b><br><br>The natural distributions of freshwater fish species are limited by their thermal tolerances, both by physiological constraints and increased interspecific competition as temperatures shift toward the thermal optima of other syntopic species. Species may mediate stress from temperature change physiologically, behaviorally, or both; but these changes may compromise competitive advantages through effects on feeding and social behavior. In the Appalachian Mountains of North America, creek chub (<i>Semotilus atromaculatus</i>) are found in warm-water and cold-water streams and overlap in range with brook trout (<i>Salvelinus fontinalis</i>) across lower thermal maxima, where they compete for food and space. As stream temperatures continue to increase due to climate change, brook trout are under increasing thermal stress which may negatively affect their ability to compete with creek chub. To examine the influences of temperature on competitive interactions between these species, we observed feeding behavior, aggression, and habitat use differences at three temperatures approaching brook trout thermal maxima (18°C, 20°C, and 22°C) among dyad pairs for all combinations of species in experimental flow-through tanks. We also examined feeding and habitat use of both species under solitary conditions. We found as temperature increased, feeding and aggression of brook trout was significantly reduced in the presence of creek chub. Creek chub pairs were more likely to occupy benthic areas and refugia while brook trout pairs used surface water more. Space use patterns significantly changed by temperature and pairing treatment. Aggression and space use shifts allowed increased exploitative and interference competition from creek chub when paired with brook trout that was not present in conspecific pairs. The decreased dominance of a top predator may lead to diverse impacts on stream community dynamics with implications for the future range restriction of brook trout and demonstrate possible mechanisms to facilitate competitive advantages of warm water generalist species under thermal stress.<br>
DOI: 10.18434/m3119
title: NIST Radionuclide Half-Life Measurements - SRD 120 - SUPERSEDED
DOI: 10.5281/zenodo.5866732
title: Supporting data for: Where and When Does Streamflow Regulation Significantly Affect Climate Change Outcomes in the Columbia River Basin?

description: Unregulated and regulated streamflow statistics presented in: Where and When Does Streamflow Regulation Significantly Affect Climate Change Outcomes in the Columbia River Basin?
description: Jane Harrell was supported in part by a National Science Foundation Graduate Research Fellowship under Grant No. DGE-1762114.
DOI: 10.5281/zenodo.5873639
title: TA, pH, DIC, and nutrient data from 7 cruises in the NE Gulf of Mexico

description: TA, pH, DIC, and nutrient data from 7 cruises in the NE Gulf of Mexico (2012 to 2014).
DOI: 10.5281/zenodo.5873638
title: TA, pH, DIC, and nutrient data from 7 cruises in the NE Gulf of Mexico

description: TA, pH, DIC, and nutrient data from 7 cruises in the NE Gulf of Mexico (2012 to 2014).
DOI: 10.5066/p98dc3dx
title: Radar-based field measurements of surface velocity and discharge from 10 U.S. Geological Survey streamgages for various locations in the United States, 2002-19

description: Near-field remote sensing methods were used to collect Doppler velocity and pulsed stage radar data at 10 conventional U.S. Geological Survey streamgages in river reaches with varying hydrologic and hydraulic characteristics. Basin sizes ranged from 381 to 66,200 square kilometers and included agricultural, desert, forest, mixed, and high-gradient mountain environments. During the siting and operational phases, radar-derived mean-channel (mean) velocity and discharge were computed using the Probability Concept (PC) and were compared against conventional instantaneous measurements and stage-discharge time series. During siting phase, radars were located, installed, and PC parameters computed. To test the efficacy of the remote-sensing methods, radars were deployed for extended periods of time to capture a range of hydraulic conditions. During operational phase, continuous time series of radar-derived surface velocity and discharge and stage-discharge were recorded, computed, and transmitted contemporaneously and continuously in real time every 5 to 15 minutes. Data are presented in two compressed (zipped) folders and one comma-separated value (CSV) file. One folder contains the radar-derived discharge values. One folder contains the stage-discharge values that were used to check the accuracy of radar-derived values. The CSV file contains siting and validation values used to derive the discharge values for the radar time series.
DOI: 10.6084/m9.figshare.18622880
title: Factors influencing the persistence of a fire-sensitive Artemisia species in a fire-dependent ecosystem

description: Fire refugia and patchiness are important to the persistence of fire-sensitive species and may facilitate biodiversity conservation in fire-dependent landscapes. Playing the role of ecosystem engineers, large herbivores alter vegetation structure and can reduce wildfire risk. However, herbivore effects on the spatial variability of fire and the persistence of fire-sensitive species are not clear. To examine the hypothesis that large herbivores support the persistence of fire-sensitive species through the creation of fire refugia in fire-prone landscapes, we examined the response of a fire-sensitive plant, Wyoming big sagebrush (<i>Artemisia tridentata </i>ssp. <i>wyomingensis </i>[Beetle & Young]) to fire and grazing in the fire-dependent mixed-grass prairie of the northern Great Plains. We carried out a controlled burn in 2010 within pre-established exclosures that allowed differential access to wild and domestic herbivores and no record of fire in the previous 75 years due to fire suppression efforts. The experiment was set-up with a split-plot design to also examine potential changes in plots that were not burned. Canopy cover of big sagebrush was recorded before the burn in 2010 and again in 2011 with percent area burned recorded within one-month post-fire in the burned plots. Percent area burned was the greatest in ungulate exclosures (92 ± 2%) and the least in open areas (55 ± 21%) suggesting that large herbivores influenced fire behavior (e.g. reducing fire intensity and rate of spread) and likely increased fire patchiness through their alterations to the fuel bed. Regression analysis indicated that the proportion of sagebrush cover lost was significantly correlated with the proportion of area burned (R<sup>2</sup> = 0.76, p = 0.05). No differences in the non-burn plots were observed among grazing treatments or among years. Altogether, this illustrates the potential importance of large herbivores in creating biotic-driven fire refugia for fire-sensitive species to survive within the flammable fuel matrix of fire-dependent grassland ecosystems like the mixed-grass prairie. Our findings also attest to the resiliency of the northern Great Plains to fire and herbivory and underscore the value of managing grasslands for heterogeneity with spatial and temporal variations in these historic disturbances.
DOI: 10.6084/m9.figshare.18622880.v1
title: Factors influencing the persistence of a fire-sensitive Artemisia species in a fire-dependent ecosystem

description: Fire refugia and patchiness are important to the persistence of fire-sensitive species and may facilitate biodiversity conservation in fire-dependent landscapes. Playing the role of ecosystem engineers, large herbivores alter vegetation structure and can reduce wildfire risk. However, herbivore effects on the spatial variability of fire and the persistence of fire-sensitive species are not clear. To examine the hypothesis that large herbivores support the persistence of fire-sensitive species through the creation of fire refugia in fire-prone landscapes, we examined the response of a fire-sensitive plant, Wyoming big sagebrush (<i>Artemisia tridentata </i>ssp. <i>wyomingensis </i>[Beetle & Young]) to fire and grazing in the fire-dependent mixed-grass prairie of the northern Great Plains. We carried out a controlled burn in 2010 within pre-established exclosures that allowed differential access to wild and domestic herbivores and no record of fire in the previous 75 years due to fire suppression efforts. The experiment was set-up with a split-plot design to also examine potential changes in plots that were not burned. Canopy cover of big sagebrush was recorded before the burn in 2010 and again in 2011 with percent area burned recorded within one-month post-fire in the burned plots. Percent area burned was the greatest in ungulate exclosures (92 ± 2%) and the least in open areas (55 ± 21%) suggesting that large herbivores influenced fire behavior (e.g. reducing fire intensity and rate of spread) and likely increased fire patchiness through their alterations to the fuel bed. Regression analysis indicated that the proportion of sagebrush cover lost was significantly correlated with the proportion of area burned (R<sup>2</sup> = 0.76, p = 0.05). No differences in the non-burn plots were observed among grazing treatments or among years. Altogether, this illustrates the potential importance of large herbivores in creating biotic-driven fire refugia for fire-sensitive species to survive within the flammable fuel matrix of fire-dependent grassland ecosystems like the mixed-grass prairie. Our findings also attest to the resiliency of the northern Great Plains to fire and herbivory and underscore the value of managing grasslands for heterogeneity with spatial and temporal variations in these historic disturbances.
DOI: 10.26300/r7yd-jg85
title: Data for "Force and torque-free helical tail robot to study low Reynolds number microorganism swimming"
DOI: 10.5281/zenodo.5872424
title: Seismic modeling of a very young SPB star – KIC 8264293

description: An inlists for MESA v9575, used to compute a grid of evolutionary models used in the paper "Seismic modeling of a very young SPB star – KIC 8264293".
DOI: 10.5281/zenodo.5872423
title: Seismic modeling of a very young SPB star – KIC 8264293

description: An inlists for MESA v9575, used to compute a grid of evolutionary models used in the paper "Seismic modeling of a very young SPB star – KIC 8264293".
DOI: 10.6073/pasta/a37fc0e58fb3e46aa9566e0c990681de
title: Data and R code for “Individual-level variation in reproductive effort in chestnut oak (Quercus montana Willd.) and black oak (Q. velutina Lam.)”, Forest Ecology and Management, 2022

description: Masting is a population-level reproductive strategy, where individuals synchronize large but intermittent seed production. Despite the high degree of synchrony at the population level, there can be considerable variation in reproduction among individuals (intraspecific variation). Here, we use 18 years of acorn production data from individual chestnut oak and black oak from control and thinned stands, to understand what factors influence individual differences in reproductive effort and variability. We included a variety of tree-level measurements, environmental characteristics, and measurements from tree cores to determine if certain characteristics were associated variations in reproduction. We considered both mean annual acorn production per m2 crown and interannual variation in acorn production (CV) as response variables. We also classified individuals as super producers (i.e., those that consistently produce more acorns than others), good, fair and poor producers (i.e., those that consistently produce less or have a higher number of failure years). In chestnut oak, 14% of the individuals were classified as super producers and contributed 34% of the total acorns, while poor producers made up 35% of the trees and contributed only 16% to total acorn production. In black oak, super producers (14% of the individuals) contributed 31% of total acorns and poor producers (24% of the individuals) contributed only 9% of the acorns. Diameter at breast height (DBH) was the most consistent variable for explaining intraspecific variation in reproductive effort and variability (i.e., larger individuals had higher mean acorn production for both chestnut oak and black oak, and lower CV for black oak). Other variables that influenced reproduction and variation included elevation and clay content for chestnut oak, and slope for black oak. We found no significant effect from the thinning treatment on acorn production. Our results illustrate how tree-level and environmental characteristics can distinguish acorn production groups, which can be used to inform management and selective harvesting decisions.
DOI: 10.5281/zenodo.5873425
title: Anxiety, Locomotor activity, Morris

description: Dataset
DOI: 10.5281/zenodo.5873424
title: Anxiety, Locomotor activity, Morris

description: Dataset
DOI: 10.26300/5tw8-nk34
title: Swimmer CAD files
DOI: 10.5066/p92ey47r
title: Cross-Section Geometry at Two Bridges over the Gunnison River in Western Colorado, 2016-17

description: This dataset contains cross-section surveys of the Gunnison River at Colorado Department of Transportation bridges I-04-K and I-03-A, western Colorado, 2016-17. The surveys were performed using a combination of: Trimble R8 Real-Time Kinematic Global Navigation Satellite System (RTK-GNSS) receiver, a USGS bridge crane with sounding weights, and optical levels. During surveys performed in 2016, a base was established at each bridge using the RTK-GNSS equipment. Subsequent surveys of channel geometry were performed using optical levels for ground surface observations above the water line and sounding weights for streambed observations below the water line, referenced to the base established in 2016. Streambed elevations were interpolated at 10 foot intervals between the measured points for both bridges because measured elevations were not always obtained at the exact same stationing from 2016 to 2017. Additionally, streambed elevations were interpolated at 5 foot intervals for stations within 20 feet of either side of the monitored piers. Stationing and elevation data are presented in the .CSV files, with one file for each bridge. Discussion of these data is presented in Henneberg (2018) USGS Scientific Investigations Report, Real-Time Streambed Scour Monitoring at Two Bridges over the Gunnison River in Western Colorado, 2016-17.&quot; These data were collected in cooperation with the Colorado Department of Transportation.
DOI: 10.5281/zenodo.5867164
title: AMR Benchmarking dataset - Metagenomics

description: Metagenomic benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. These genomes were then randomly assigned a relative abundance, had additional AMR genes randomly inserted (to cover all AMR genes in CARD v3.1.4) and metagenomic Illumina reads simulated from them.<br> <br> Metagenomic simulation was performed using: https://github.com/fmaguire/AMR_Metagenome_Simulator and the entire process can be repeated using the metagenome_benchmark.sh script included above.<br>
DOI: 10.5066/p9nwqw7c
title: Data for Characterization of Ambient Groundwater Quality within a State-wide, Fixed Station Monitoring Network in Pennsylvania, 2015-2019

description: This dataset contains quality-assurance and quality-control data (QA/QC) not publicly available in the online National Water Information System (NWIS) for the Pennsylvania Groundwater Monitoring Network collected by the U.S. Geological Survey (USGS) in Pennsylvania, 2015-2019. The quality-control data (such as blanks and replicates) were collected at a subset of sites to ensure that the data meets specific data-quality objectives of this program. Also included in this data release are the supplemental tables for the accompanying USGS publication “Characterization of Ambient Groundwater Quality within a State-wide, Fixed Station Monitoring Network in Pennsylvania, 2015-2019.” The supplemental tables consist of: 1) a correlation matrix using results from principal components analysis (PCA) and 2) individual contributions of each sample to the PCA results are also included.