cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/9ddwt-v1b45
title: Agrobacterium tumefaciens C1

description: Wild type, no T4SS
description: <strong>Tilt Series Date:</strong> 2014-02-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> liquid LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
  etl2014-02-01-16_slicer7144.jpg: Periplasmic granule
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/rawdata/</p>c1_60005.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/rawdata/c1_60005.mrc"
        > <i class="download icon"></i> Download </a></p>

        c1_60005_full.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/3dimage_49221/c1_60005_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/file_10962/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/file_10963/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/file_10964/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-01-16/file_10965/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ap7h2-gg950
title: Agro C58 22C liq_pl

description: Agrobacterium tumefaciens C58
description: <strong>Tilt Series Date:</strong> 2014-07-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski wild type cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C on plates then recovered in liquid for 4 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/rawdata/</p>c58_22C-plliq0002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/rawdata/c58_22C-plliq0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_22C-plliq0002.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/3dimage_49385/c58_22C-plliq0002.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/file_11573/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/file_11574/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/file_11575/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-14/file_11576/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4nnde-9xr14
title: Agrobacterium tumefaciens C58

description: Wild type
description: <strong>Tilt Series Date:</strong> 2014-01-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown on plates, scraped off and grown o/n in a drop</p>
<strong>Sample Preparation:</strong> Vitrobot, manual blot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/rawdata/</p>c58_drop10019.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/rawdata/c58_drop10019.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_drop10019_full.rec,  Reconstruction (Pixel Size 0.0 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/3dimage_49327/c58_drop10019_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/file_11387/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/file_11388/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/file_11389/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-28-26/file_11390/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/31vzj-e9452
title: Agrobacterium tumefaciens A139

description: Bald strain with GFP tagged VirB8
description: <strong>Tilt Series Date:</strong> 2014-01-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown on plate, scraped off and grown o/n in a drop</p>
<strong>Sample Preparation:</strong> Vitrobot manual blotting</p>
  etl2014-01-27-2_slicer20271.jpg: Flattening
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/rawdata/</p>A139_drop0002.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/rawdata/A139_drop0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        A139_drop0002_full.rec,  Reconstruction (Pixel Size 0.0 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/3dimage_49298/A139_drop0002_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/file_11268/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/file_11269/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/file_11270/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-2/file_11271/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.yzkf3p
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrostis stolonifera",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 301 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034046-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/dm9be-cpk90
title: MamJ deletion (and might contain

description: Raw data files of MamJ deletion (and might contain
description: <strong>Tilt Series Date:</strong> 2010-02-18</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture were from Arash Komeili. Upon receiving, cells were frozen in 2 hours. Meanwhile they were kept in 30C. Data collected and processed by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Stationary phase. </p>
<strong>Sample Preparation:</strong> R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/rawdata/</p>10feb18a_dJnofe5_028.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/rawdata/10feb18a_dJnofe5_028.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_028_part.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/3dimage_9403/10feb18a_dJnofe5_028_part.rec"
        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_028.tif,  1.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/file_2675/10feb18a_dJnofe5_028.tif"
        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_028a.tif,  774.8 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/file_2676/10feb18a_dJnofe5_028a.tif"
        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_028b.tif,  1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/file_2677/10feb18a_dJnofe5_028b.tif"
        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe5_028c.tif,  1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-28/file_2678/10feb18a_dJnofe5_028c.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p517z-9j637
title: Agro C58 22C liq_pl

description: Agrobacterium tumefaciens C58
description: <strong>Tilt Series Date:</strong> 2014-07-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski wild type cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C on plates then recovered in liquid for 4 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/rawdata/</p>c58_22C-plliq0006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/rawdata/c58_22C-plliq0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_22C-plliq0006.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/3dimage_49391/c58_22C-plliq0006.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/file_11590/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/file_11591/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/file_11592/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-18/file_11593/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16930734
title: FIShBOT Archive 2025-08-23

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.16930735
title: FIShBOT Archive 2025-08-23

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.22002/dfydb-zf686
title: HUVECs CHMP4A+VPS4DN

description: HUVECs transfected with CHMP4A+VPS4DN constructs using Nucleofector Kit. Sample# C58-2
description: <strong>Tilt Series Date:</strong> 2010-12-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4DN construct provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/rawdata/</p>10dec13a_C45_4_037.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/rawdata/10dec13a_C45_4_037.st"
        > <i class="download icon"></i> Download </a></p>

        10dec13a_C45_4_037_full.rec,  Reconstruction (Pixel Size 2.0 nm), 3.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/3dimage_68216/10dec13a_C45_4_037_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10dec13a_C45_4_037_vault.tiff,  file associated to 3D Image #68216, 994.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/file_15871/10dec13a_C45_4_037_vault.tiff"
        > <i class="download icon"></i> Download </a></p>

        10dec13a_C45_4_037_vaultlowcenter.tiff,  file associated to 3D Image #68216, 1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/file_15872/10dec13a_C45_4_037_vaultlowcenter.tiff"
        > <i class="download icon"></i> Download </a></p>

        10dec13a_C45_4_037_vaults_assembly?.tiff,  file associated to 3D Image #68216, 1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/file_15873/10dec13a_C45_4_037_vaults_assembly?.tiff"
        > <i class="download icon"></i> Download </a></p>

        10dec13a_C45_4_037packedbarrels.tiff,  file associated to 3D Image #68216, 1.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2010-12-13-22/file_15874/10dec13a_C45_4_037packedbarrels.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.7910/dvn/tlff2f
title: Models and Data for "Data-Centric System Dynamics Modelling of General Internal Medicine Physicians in Ontario: Forecasting Supply and Workload Analysis"

description: This dataset contains the system dynamics models, calibration setup, and supporting files associated with the MASc thesis “Data-Centric System Dynamics Modelling of General Internal Medicine Physicians in Ontario: Forecasting Supply and Workload Analysis” by Parnian Azimzadeh. The models are implemented in Vensim Professional 10.1.3 and include four main components:

1) Calibration Model – used for optimization and identification of optimal rates for five base fractions: Base Return Fraction, Base Leave Fraction, Base OutMigration Fraction, Base CredLoss Fraction, and Base Retire Fraction. The final optimized rates, along with the final payoff report, are provided in the file Final_Flow_Coef_0.1.par.txt.

2) Validation Model – applies the optimized rates from the calibration period (2009–2019) to test the model against out-of-sample data for 2020–2023.

3) Baseline Forecast Model – uses the optimized calibration results to project the supply of general internal medicine physicians in Ontario through 2040 under baseline conditions.

4) Scenario Analysis Model – introduces adjustable policy levers to test alternative futures by modifying selected inflows and outflows. For this purpose, a separate scenario dataset with disaggregated flows is used to enable more detailed scenario analysis.

Additional files included:

A) Optimization trace (.tab) – contains the simulation results for each optimization run, showing how error and parameter values evolve across iterations.

B) Payoff and optimizer configuration files (.vpd, .voc) – define the error measure and optimization settings used in calibration.

All three core models (Calibration, Validation, and Baseline Forecast) rely on a “pushed” data series, which shifts the original longitudinal OPRC PIO dataset forward by one year. This adjustment ensures alignment with the Vensim equations that calculate physician counts annually. The recategorization and one-year push, as described in the thesis, produce only negligible changes in results, and validation tests are conducted against the actual data.

Note on data loading: When loading the CSV data through Tools → Control Panel in Vensim, the setting “time runs down” must be selected, with time values recognized when col# = 1. This ensures proper alignment of time series with the model equations.

Together, these files enable full reproduction of the calibration (2009–2019), validation (2020–2023), and projection analyses, as well as exploration of scenario-based futures for physician workforce supply.