cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0t5v4/1
title: Gallet et al - Evolution - DATASET - 2012

description: This data file includes all the data that were used in the article: Phenotypic stochasticity prevents lytic bacteriophage population from extinction during bacterial stationary phase, authored by Romain Gallet, Thomas Lenormand, and Ing Nang Wang. The Excel file comprises 4 sheets, one per figure in the article. We always show the raw data, as well as the proportions calculated from these raw data. A graph, similar to the figure included in the manuscript, is also present on each data sheet, to illustrate the data presented.
DOI: 10.5061/dryad.2rg92p5v/12
title: Complete CO1 dataset of European Agabini in nexus format
DOI: 10.5061/dryad.369q9/5
title: Joshua tree phenotypic measurements

description: Phenotypic measurements for Joshua tree. Includes measurements not analyzed in the present manuscript: crown diameter in meters (crown dia); branch count (branch #); lengths in centimeters and widths in millimeters for five leaves (l1, w1, l2, w2, l3, w3, l4, w4, l5, w5); total tree height in meters (tree_h); height to first branching in meters (h_1st_br); petal length and width in mm (pet_l and pet_w); diagonal length of a petal in mm (pet_diag); total pistil length and width in mm (pis_l and pis_w); style length, basal width, and midpoint width in mm (sty_l, sty_bw, sty_mw).
DOI: 10.5061/dryad.3c5r8/1
title: GKR Capture Histories

description: Capture histories at each trapping grid, formatted for analysis in Program MARK or rMark
DOI: 10.5061/dryad.3c5r8/2
title: Environmental Predictors for Giant Kangaroo Rats in Carrizo Plain

description: ASCII rasters of environmental predictors used to produce species distribution model for giant kangaroo rats (Dipodomys ingens) in the Carrizo Plain National Monument.
DOI: 10.5061/dryad.3c5r8/3
title: Estimate of giant kangaroo rat burrow density

description: Count of active and inactive giant kangaroo rat burrows in 10m x 50m transect at sites across GKR range.
DOI: 10.5061/dryad.467r0/2
title: DrogeYoung_CompatibilityDryadData

description: This file includes all data collected in the laboratory experiment assessing male and female contribution to offspring viability (experiment one in the publication). Data was collected by E.M. Droge-Young, M.K. Manier, S. Lüpold and S. Pitnick; additional questions should be directed to E.M. Droge-Young (emdroge@syr.edu). Data are in csv. format. Empty cells represent missing data (e.g., missing body size) whereas 0 is an informative value (e.g., 0% of eggs hatched)

Specific variable information:
Copulation duration is measured in minutes
Hatch success represents the proportion of eggs that successfully hatched after at least 24 hours
Development time is an average for each mating measured in days
Posthatching viability represents the proportion of hatched offspring that successfully eclose as adults
Thorax length is measured in millimeters
DOI: 10.5061/dryad.4kv44/1
title: Matute_Harris_Pigmentation_ForDryad

description: Dataframes and scripts. Zip File
DOI: 10.5061/dryad.5321kq8j/1
title: Dalton, Charruau et al_73cheetah
DOI: 10.5061/dryad.560r4/2
title: Linkage mapping genotypes dataset

description: Genotypes used to produce a linkage map of 11 RAD-Seq derived markers flanking the shell colour (C) and banding presence (B) loci of the Cepaea nemoralis supergene. Data for two crosses are shown: C100 x C101 was a cross between a double homozygous recessive yellow-banded mother and a heterozygous  father, resulting in either yellow-unbanded or pink-banded F1 offspring (n = 102). C118 x C119 was a cross between a double homozygous recessive yellow-banded parent and a pink-banded parent heterozygous for colour, but not banding. Full details of the crosses and the genotype assays are provided in the paper. Marker genotypes are provided in CRIMAP formatting.
DOI: 10.5061/dryad.560r4/3
title: Shell colour and banding phenotype data from 6 Cepaea nemoralis crosses

description: Phenotype data for the shell ground colour (C)and banding presence (B) supergene loci, scored in 398 individuals from 6 crosses of Cepaea nemoralis. As C. nemoralis is a simultaneous hermaphrodite, offspring from both parents were used, except for crosses C100 x C101 and C108 x C109, where a non-virgin snail (C100 and C108 respectively) was removed after mating. Full details of the crosses, rearing of the snails and analysis of the data are provided in the paper.
DOI: 10.5061/dryad.6pq0n/1
title: Microsatellite Genotype Data
DOI: 10.5061/dryad.73pv8/1
title: Morphological measurements of Aceria anthocoptes

description: Morphological measurements of Aceria anthocoptes, original data. Abbreviations for column headings: please see in the publication.
DOI: 10.5061/dryad.7d2g2/7
title: Supplementary Table 5

description: Supplementary Table 5
DOI: 10.5061/dryad.82gr4/2
title: Microsatellite 454 GS-FLX sequences from microsatellite libraries for Planococcus citri

description: High throughput DNA sequencing by 454-GS-FLX Titanium (Roche Diagnostics) chemistry of microsatellite libraries of Planococcus citri
DOI: 10.5061/dryad.82j66/2
title: Cardenolide data from 12 species of milkweed (Asclepias sp)
DOI: 10.5061/dryad.8ps58rp2/11
title: TCM_021

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 21
DOI: 10.5061/dryad.8ps58rp2/12
title: TCM_024

description: Animal Sequences from Traditional Chinese Medicine Sample No. 24
DOI: 10.5061/dryad.8ps58rp2/13
title: TCM_026

description: Plant Sequences from Traditional Chinese Medicine Sample No. 26
DOI: 10.5061/dryad.8ps58rp2/14
title: TCM_027

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 27
DOI: 10.5061/dryad.8ts3p/1
title: Supplementary Table1

description: List of planktonic foraminifera species recorded from Atlantic deep‐sea cores included in this study for each time bin. Note that only those species that can be unambiguously dated to within a time bin are included. Columns give the time interval covered in millions of years.
DOI: 10.5061/dryad.b1q2n/12
title: 120524_97-108.csv

description: File: 120524_97-108.csvFormat: text (comma separated values)Contents: Data obtained from the analysis of flow cytometry data files well.079 - well.108 using WEASEL 3.0.1. File also contains information about the identity of every sample. Data are from samples prior to the competition experiment and are used to obtain the initial frequencies of the competitors as shown on the x-axis of the inset of figure 2 and on the right side of figure 2.
DOI: 10.5061/dryad.b8r5c/1
title: Food web data for seven coastal food webs with metazoan parasites
DOI: 10.5061/dryad.bq858/1
title: STRUCTURE_input
DOI: 10.5061/dryad.bq858/2
title: IMa2_BG_K2
DOI: 10.5061/dryad.c744j/2
title: Sterility
DOI: 10.5061/dryad.c744j/4
title: SublineCreation
DOI: 10.5061/dryad.cb5f3/6
title: 50% majority-rule consensus 28S and COI

description: 50% majority-rule consensus 28S and COI BI tree used in the ancestral state reconstruction (ASR) performed in MESQUITE.
DOI: 10.5061/dryad.cf16m/1
title: data1_copy number and growth rate

description: Copy number (plasmids/cell) and growth rate (mOD600/min) data collected from the same clones isolated from transfers 0 and 20 of the long term selection experiment.
DOI: 10.5061/dryad.cf16m/2
title: data2_respiratory deficinet counts

description: Counts of aerobic respiratory deficient colonies (i.e. colonies unable to grow when transferred on to non-fermentable glycerol media) isolated from the long term selection experiment at 5 transfer intervals.  Number of mutants, total colonies screened, and the resulting proportions are shown.
DOI: 10.5061/dryad.g2p5g/2
title: phased_tempoMode_phylogeo_sequences
DOI: 10.5061/dryad.gb4kh/1
title: inputdata_nuclear_microsats

description: Arlequin inputfile of nuclear microsatellites
DOI: 10.5061/dryad.gb4kh/3
title: plastid_haplotype_list

description: Plastid haplotype list for use in Arlequin software
DOI: 10.5061/dryad.gd031k26/1
title: Supplemental Dataset 1
DOI: 10.5061/dryad.j35fc/2
title: GenePartitions

description: GenePartitions
DOI: 10.5061/dryad.k8d1f/1
title: Adhesive contact on microstructured substrates

description: This file contains single pad friction force measurements of cockroach and dock beetle pads on transparent micro-structured substrates and the static contact study of dock beetle pads on "tall" pillar substrates.
DOI: 10.5061/dryad.kn3d0/5
title: hemi_arb-soc_ND4_starbeast12_So-14sp

description: Sequence alingment for the gene ND4 used in the *BEAST analysis
DOI: 10.5061/dryad.m2r31/1
title: cpDNA.fas

description: Alignment of chloroplast data (partial psbA gene, psbA - trnH intergenic spacer, partial trnH gene) for all individuals. Fasta format.
DOI: 10.5061/dryad.mb06v/1
title: Table S2

description: Microsatellite genoypes at LG2 & LG15 for males and females from six populations.
DOI: 10.5061/dryad.mb06v/2
title: Sweden LG2-15 all pops-PCA

description: Input file for PCAgen v2.0 with all 6 Swedish populations.
DOI: 10.5061/dryad.mb06v/3
title: Sweden LG2-15 Tvedora-PCA

description: Input file for PCAgen v2.0 with the Tvedora population.
DOI: 10.5061/dryad.mb06v/4
title: Sweden LG2-15 PCA

description: Archive file with input files of all 6 populations and a file with the 6 populations pooled together, for PCAgen v2.0
DOI: 10.5061/dryad.mb06v/5
title: Sweden LG2-15 STRUCTURE

description: Archive file with input files of all 6 populations and a file with the 6 populations pooled together, for Structure v2.3.3
DOI: 10.5061/dryad.nh63c/1
title: BlowDry-Exp-Duplouy-Spring2012

description: Blow dry experiment 1
DOI: 10.5061/dryad.nh63c/2
title: Claws-ALPTUPSA-2012

description: Claw measurements - experiment 2
DOI: 10.5061/dryad.ns624/1
title: Roeselii_invasion_data

description: The .xls file contains the years and relative positions that Roesel's bush-crickets were observed in southern-central Sweden from 1981-2010 during their ongoing invasion of this area. The distance measures are in metres relative to the original observation location (see Preuss et al. 2014, Ecology and Evolution for more details). The observation locations were summarised as the centre of 5x5km landscape squares.
DOI: 10.5061/dryad.p88q8/1
title: 29564HighQualitySNPs

description: plink map file to extract the high quality SNPs used for analysis from ISGC
DOI: 10.5061/dryad.q8f74/2
title: BellyButton.Only_Mapping_File
DOI: 10.5061/dryad.q8f74/3
title: Aligned representative sequences
DOI: 10.5061/dryad.qs941/1
title: Runaway indirect genetic effects code and data

description: MATLAB code used to numerically iterate the full recursions in the main paper. Raw data for each figure in the main paper.
DOI: 10.5061/dryad.r4jq1/10
title: DataPrediction3RookTable3
DOI: 10.5061/dryad.r4jq1/11
title: DataPrediction4JackdawTable4
DOI: 10.5061/dryad.r4jq1/12
title: DataPrediction4RookTable4
DOI: 10.5061/dryad.t5st8/1
title: Mauldin et al Microsatellite Data Dryad

description: This file contains all microsatellite data examined in the study.  The first row contains column headers.  The first column contains museum ID numbers.  All following columns indicate allele sizes for the animal indicated at the beginning of the row.  Missing data value is coded as "0"
DOI: 10.5061/dryad.t8q3k/1
title: Martin and Husband Diameter Height Data

description: This file contains diameter measurements for seedlings of Chamerion angustifolium, grown from field collected seed, reared in the green house and planted into 9 plots in the Canadian Rocky Mountains. (See paper for details.) Read me on first sheet of work book.
DOI: 10.5061/dryad.t8q3k/4
title: Martin and Husband Weather Data

description: This file contains daily meteorological data downloaded from Environment Canada (http://climate.weatheroffice.ec.gc.ca/climateData/canada_e.html) as csvs covering 1 year of data each and amalgamated.Specifically, the available data was downloaded for 9 stations in the Canadian Rocky Mountains for the period from 1997 to 2007. Station information and read me included in the data file.
DOI: 10.5061/dryad.vp634306/19
title: Figure S02

description: Phylogenetic estimates from sites on each of the chromosomes and the chloroplast. Each tree is the Bayesian consensus tree estimated for the concatenated variable sites on each chromosome and the chloroplast, with posterior support indicated at each node: black filled circles, ≥ 0.95; gray, between 0.95 and 0.75; white, &lt; 0.75. Scale bars indicate branch length in expected substitutions per site.
DOI: 10.5061/dryad.vq76f/1
title: Model code

description: The code for the simulation model for which results are presented in the paper. Coding was done in Delphi 7.0.
DOI: 10.5061/dryad.084g8/4
title: MITO data set - TREES output
DOI: 10.5061/dryad.2727k/1
title: Phylogenetic Analyses

description: Input-files (data) and resulting phylogenetic tree(s) for all RAxML, MrBayes, PAUP* and BEAST analyses.
DOI: 10.5061/dryad.2727k/3
title: Aepyornis hildebrandti Sequence Data

description: FASTQ file containing filtered and de-mulitplexed Ion Torrent PGM (Life Technologies) sequencing reads corresponding to the Aepyornis hildebrandti (MNZ S38301) enriched genomic library. See main publication for full details on data processing.
DOI: 10.5061/dryad.2727k/4
title: Mullerornis agilis Sequence Data

description: FASTQ file containing filtered and de-mulitplexed Ion Torrent PGM (Life Technologies) sequencing reads corresponding to the Mullerornis agilis (MNZ S38300) enriched genomic library. See main publication for full details on data processing.
DOI: 10.5061/dryad.2hk46/1
title: Barraquand Pinot et al. JAE Overcompensation and phase effects in a cyclic vole 2014

description: Vole abundance data and computer codes, in both R and Matlab, to reproduce the results presented in the main text and SI.
DOI: 10.5061/dryad.369q9/6
title: Pollinator ovipositor lengths

description: Ovipositor measurements in millimeters (ovip_mm) for both species of moths pollinating Joshua tree. Date of preparation and imaging/measurement, and the initials of observer are given for each specimen.
DOI: 10.5061/dryad.3h7g8/1
title: Female_preference_dataset_Dryad

description: Data on female preference from artificial playback songs in experimentally sexually selected populations of Drosophila pseudoobscura.
DOI: 10.5061/dryad.3n8j0/1
title: Dietrich_Leptospira_alldata
DOI: 10.5061/dryad.3n8j0/2
title: Dietrich_Leptospira_alignments
DOI: 10.5061/dryad.4v0c5/2
title: SNP_genotypes_1047

description: This tab-separated file contains the genotype data for the initial analysis of the 4T 1928 and the 4T 2008 samples with the full 1047 SNP panel.
DOI: 10.5061/dryad.541v5/1
title: individual_by_individual_sampling_location_and_genotypes

description: This file contains individual by individual information about sampling and microsatellite Multilocus Haplotypes. This includes Country, State, locality, site number sensu table 1, whether the isolate was collected on native forest or commercial plantation, host and GPS coordinates. Because 112 MLHs were observed on the populations the internal code for MLHs (#MLH) is provided. Three genetic groups were identified using Structure, this info is also presented individual by individual. The isolate name and the culture collection number (CMW) of the Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, South Africa is also presented individual by individual. Finally the allele for each of the eight microsatellite loci (MN-1, MN-2, MN-3, MN-7, MN-9, MN-10, MN-11 and MN-14) amplified using the fluorescently labelled T. nubilosa-specific primers developed by Hunter et al. (2006) are provided.
DOI: 10.5061/dryad.560r4/1
title: Linkage map marker sequence assemblies

description: RAD-tag sequences and paired-end contig assemblies for 11 RAD loci, which were used to develop a linkage map of genetic markers flanking the shell colour (C) and banding presence (B) loci of the Cepaea nemoralis supergene. The sequences were generated by Illumina sequencing of three RAD-Seq libraries comprising both parents and a total 24 F1 offspring from a single cross (C100 x C101) that segregated for shell colour (C) and presence or absence of banding (B). De novo assembly of RAD loci was performed using RADtools 1.2.4 (http://www.RAD-Seq.info). A combination of Unix and Excel commands were then used to identify candidate RAD loci that cosegregate with colour and banding. Paired-end reads were assembled into contigs using VelvetOptimiser version 2.1.7, separately for each of the three RAD libraries. For the RAD markers shown, the corresponding contigs were concatenated and then manually aligned into longer, high-quality contigs. Each sequence is labelled: RAD marker ID – allelic phase with the supergene loci – sequence type – length – coverage. Contigs that could not be aligned are labelled as such.
DOI: 10.5061/dryad.5k3t47p0/1
title: Supplementary Electronic Files
DOI: 10.5061/dryad.62797/1
title: Microsatellite data for F. vesiculosus (9 loci)
DOI: 10.5061/dryad.62797/2
title: Occurrences (presences) of F. vesiculosus throughout its range (Northern Atlantic). Information gathered from literature. File formate: TXT (Lon, Lat, References)
DOI: 10.5061/dryad.62797/3
title: Input files for modeling (raster files for environmental and tidal data)
DOI: 10.5061/dryad.62797/4
title: R code for modeling
DOI: 10.5061/dryad.6h822/2
title: Figure_3_ExperimentII

description: Data collected in the laboratory, for the number of eggs spawned per female, over the 10 day study period of Experiment II. Each spawning group (each tank) contained 1 female (either inbred or outbred, as indicated in table) and 2 males (one inbred and one outbred). Low dose refers to previous exposure to 5 ug/L clotrimazole (nominal) as detailed in manuscript.
DOI: 10.5061/dryad.6h822/7
title: Figure_5_Tank2(A22A)

description: Paternity analysis for Tank 2 (A22A). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6r42r366/4
title: Baamrane_ITSAst_filtered_data
DOI: 10.5061/dryad.7b185/1
title: cytBcomplete

description: ClustalX alignment of cytochrome B mtDNA
DOI: 10.5061/dryad.7jd83/1
title: Buffalo Body Condition Data

description: These data comprise African buffalo body condition scores created from video files in Kruger National park in 2001-2002; a subset of these data were used in Ryan et al, 2012, as described in methods therein. This dataset contains 5,327 observations. DO NOT open this file in Excel, as the age ranges will be read incorrectly.
DOI: 10.5061/dryad.7jd83/2
title: NP_01-02_KNP

description: These data comprise the mean fecal Nitrogen and Phosphorous values, for herds sampled in Kruger National Park, South Africa, in 2001 and 2002.These data were used in analyses in Ryan, S.J., Cross, P.C., Winnie, J, Jr, Hay, C., Bowers, J., Getz, W.M. 2012. The utility of NDVI for predicting African buffalo forage quality. Journal of Wildlife Management. 76(7):1499-1508
DOI: 10.5061/dryad.7jd83/3
title: Vegetation and fecal indicators of Nitrogen and Phosphorous

description: These vegetation and fecal data were used to describe the relationship between fecal and vegetation Nitrogen (N) and Phosphorous (P) content, in 2002-2003 in Kruger National Park, as described in Ryan et al, 2012
DOI: 10.5061/dryad.8p7435hq/1
title: albo

description: Distributional records used in construction of MaxEnt species distribution model for Lucasium alboguttatum sourced from OZCAM and vetted for errors.
DOI: 10.5061/dryad.8p7435hq/2
title: dorn

description: Distributional records used in construction of MaxEnt species distribution model for Diplodactylus ornatus sourced from OZCAM and vetted for errors.
DOI: 10.5061/dryad.8p7435hq/3
title: llin

description: Distributional records used in construction of MaxEnt species distribution model forLerista lineopunctulata sourced from OZCAM and vetted for errors.
DOI: 10.5061/dryad.8p7435hq/4
title: lprae

description: Distributional records used in construction of MaxEnt species distribution model for Lerista praepedita sourced from OZCAM and vetted for errors.
DOI: 10.5061/dryad.8ps58rp2/15
title: TCM_020

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 20
DOI: 10.5061/dryad.986kd/1
title: ITS2 fasta aligment
DOI: 10.5061/dryad.9cp1f/1
title: Dissecting the genetic architecture of F1 hybrid sterility in PWD/Ph and C57BL/6J backcross

description: QTL mapping data in R/qtl format: BW = body weight [g], TW testes weight [mg], SC = sperm cells counted in Bürker chamber [millions]
DOI: 10.5061/dryad.9cs2v/2
title: Dam_Data
DOI: 10.5061/dryad.9p91h/1
title: Gabon_dryad_fish_data

description: Data description: Date – MM/DD/YYYY ; Reef – Gabon ; STATION – Rig1……Rig10 ; Latitude – Decimal degrees, WGS 1984 ; Longitude - Decimal degrees, WGS 1984 ; Depth_m- depth in meters ; Depth_stratum - DIVER – AMF = Alan Friedlander ; TRANSECT = A, B, C, D ; Taxon – lowest possible scientific name ; num_m^2 – numerical abundance in number per meter squared ; g_m^2 – biomass in grams per meter squared
DOI: 10.5061/dryad.bb5t3/1
title: RawData

description: The compressed file contains all raw data of the chemostat populations collected within this study. Please, find a more detailed description in the ReadMe.txt file.
DOI: 10.5061/dryad.c2124/2
title: Mapping and variant calling data on SSC5:98000000-99000000

description: This file shares the same REAME as SSC11_53500000-55500000.tar
DOI: 10.5061/dryad.c744j/1
title: SegDist

description: See ReadMe file.
DOI: 10.5061/dryad.gm201/6
title: Fig. S2_treeTNTtraditional2

description: Fig. S2. Unweighted parsimony (TNT New Technology Search) results for combined data.
DOI: 10.5061/dryad.h1v65/1
title: Call_P_matrix_data

description: Archive contains data in 3 .csv files and ReadMe.txt, which describes the data files. Data comprises measurements of advertisement call parameters from male Teleogryllus commodus.
DOI: 10.5061/dryad.h9873/1
title: Santini_et_al_2013_timetree

description: Pufferfish timetree, Newick format
DOI: 10.5061/dryad.m0n61/1
title: RAxML alignment

description: concatenated, 5 locus alignment including all Varanus data and relevant outgroup samples
DOI: 10.5061/dryad.m0n61/16
title: *BEAST xml 4

description: 4 of 6 xml files for *BEAST analyses
DOI: 10.5061/dryad.m0n61/7
title: BPP lineage assignments

description: lineage assignment for each sample in the sequence file
DOI: 10.5061/dryad.m2r31/2
title: MYC_AllIndividuals.fas

description: Alignment of nuclear marker (1st intron of MYC-like gene) for all individuals. Fasta format.
DOI: 10.5061/dryad.m2r31/3
title: NIA_AllIndividuals

description: Alignment of nuclear marker (3rd intron of NIA gene) for all individuals. Fasta format.
DOI: 10.5061/dryad.m42s5/2
title: Survival Juvenile Eucs in Ecol Monogr
DOI: 10.5061/dryad.mb06v/6
title: Sweden LG2-15 FSTAT

description: Archive file with input files of all 6 populations, for Fstat v2.9.3.2
DOI: 10.5061/dryad.mf122/3
title: METADATA
DOI: 10.5061/dryad.p8b82/1
title: trees_and_alignments

description: This file contains all the alignments and trees that were used for this work.
DOI: 10.5061/dryad.qv6hr4mq/1
title: Richards-Zawacki et al. - COLOR ANALYSIS

description: Analysis of dorsal and ventral coloration of the poison frog Dendrobates pumilio from a polymorphic (red and yellow) population on Bastimentos Island, Panama. Comparisons are made between color classifications made "by eye" and those made using analysis of RGB color scores derived from standardized photographs using Principle Components Analysis and a two-step clustering algorithm in SPSS.