cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26304876.v1
title: Chloroplast genome of <i>plantago major</i>, a medicinal plant in China

description: <i>Plantago major</i> (Plantaginaceae) is a medicinal plant in Chinese folk culture, known for its famous medicinal components such as plantagomain. In this study, we conducted genome sequencing of <i>P. major</i> using Illumina sequencing technology. The assembled complete chloroplast genome had a length of 165,044 bp, comprising a large single-copy regions (82,963 bp), a small single-copy regions (4,633 bp), and a pair of inverted repeat regions (38,724 bp). A total of 140 genes were detected, including 94 CDS, 38 tRNA, and 8 rRNA. Phylogenetic analysis revealed a close genetic relationship between <i>P. major</i> and <i>P. rigida</i>. These findings provide valuable data for a comprehensive understanding of the biological characteristics of <i>P. major</i>.
DOI: 10.6084/m9.figshare.26379633
title: The complete chloroplast genome of <i>Polyspora axillaris</i> (Theaceae)

description: <i>Polyspora axillaris</i> (Roxb. ex Ker Gawl.) Sweet 1825, is a shrub or tree that is about 9 meters tall in the Theaceae family, mainly distributed in China and Vietnam, and it is widely used as a green tree species in many regions owing to its rapid growth and good adaptability. It is rich in various beneficial extracts for humans, but there are limited studies on it. In this study, we sequenced and annotated the complete plastome of <i>P. axillaris</i>. The chloroplast genome length of <i>P. axillaris</i> is 156,770 bp, with a total of 132 genes, including 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes. The complete chloroplast genome of <i>P. axillaris</i> contains two Inverted Repeats (IRs) of 26,077 bp, a Large Single-Copy (LSC) region of 86,286 bp and a Small Single-Copy (SSC) region of 18,330 bp. The overall G/C content in the chloroplast is 37.3%. Phylogenetic inference shows that <i>P. axillaris</i> formed a sister relationship with <i>P. hainanensis</i>, along with 10 Theaceae species. The research result of <i>P. axillaris</i> will contribute to the genetic preservation of the species and the phylogenetic study of <i>Polyspora</i>.
DOI: 10.6084/m9.figshare.26384919
title: The complete mitochondrial genome of <i>Exoristobia philippinensis</i> (Hymenoptera: Chalcidoidea: Encyrtidae) and phylogenetic analysis

description: <i>Exoristobia philippinensis</i> (Hymenoptera: Encyrtidae) is a worldwide parasitic wasp. This work presents the mitochondrial genome (mitogenome) of <i>E. philippinensis</i> for the first time. The complete mitochondrial genome of <i>E. philippinensis</i> was sequenced and annotated, which was 15,751 bp in length, and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). All 13 PCGs were initiated by the ATN (ATG, ATT, and ATA) codon, terminated with the stop codon TAA except for <i>ND1</i> which ends with TAG. Phylogenetic analysis showed that <i>E. philippinensis</i> has a sister relationship with the genus <i>Lamennaisia</i>.
DOI: 10.6084/m9.figshare.26384919.v1
title: The complete mitochondrial genome of <i>Exoristobia philippinensis</i> (Hymenoptera: Chalcidoidea: Encyrtidae) and phylogenetic analysis

description: <i>Exoristobia philippinensis</i> (Hymenoptera: Encyrtidae) is a worldwide parasitic wasp. This work presents the mitochondrial genome (mitogenome) of <i>E. philippinensis</i> for the first time. The complete mitochondrial genome of <i>E. philippinensis</i> was sequenced and annotated, which was 15,751 bp in length, and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). All 13 PCGs were initiated by the ATN (ATG, ATT, and ATA) codon, terminated with the stop codon TAA except for <i>ND1</i> which ends with TAG. Phylogenetic analysis showed that <i>E. philippinensis</i> has a sister relationship with the genus <i>Lamennaisia</i>.
DOI: 10.5284/1122104
title: Buildings Recording And Investigation at Fawley Court

description: This digital archive comprises images and vector data from an Historic Investigation and Building watching brief, undertaken between April 2021 and June 2022 by Oxford Archaeology (OA), at Fawley Court, Buckinghamshire. The work was undertaken during the dismantling of the washrooms beneath the stairs to add to our existing understanding of the structure. Following a standard set by Historic England, the building's recording program had been set at Level 4.
DOI: 10.6084/m9.figshare.26379633.v1
title: The complete chloroplast genome of <i>Polyspora axillaris</i> (Theaceae)

description: <i>Polyspora axillaris</i> (Roxb. ex Ker Gawl.) Sweet 1825, is a shrub or tree that is about 9 meters tall in the Theaceae family, mainly distributed in China and Vietnam, and it is widely used as a green tree species in many regions owing to its rapid growth and good adaptability. It is rich in various beneficial extracts for humans, but there are limited studies on it. In this study, we sequenced and annotated the complete plastome of <i>P. axillaris</i>. The chloroplast genome length of <i>P. axillaris</i> is 156,770 bp, with a total of 132 genes, including 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes. The complete chloroplast genome of <i>P. axillaris</i> contains two Inverted Repeats (IRs) of 26,077 bp, a Large Single-Copy (LSC) region of 86,286 bp and a Small Single-Copy (SSC) region of 18,330 bp. The overall G/C content in the chloroplast is 37.3%. Phylogenetic inference shows that <i>P. axillaris</i> formed a sister relationship with <i>P. hainanensis</i>, along with 10 Theaceae species. The research result of <i>P. axillaris</i> will contribute to the genetic preservation of the species and the phylogenetic study of <i>Polyspora</i>.
DOI: 10.15468/dl.3sz6vr
title: Occurrence Download

description: A dataset containing 1036 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus densata Mast."
 ]
}

 The dataset includes 1036 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043365-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.26335564
title: Supplementary material

description: Electronic Supplementary Information
DOI: 10.60893/figshare.apl.26335564.v1
title: Supplementary material

description: Electronic Supplementary Information
DOI: 10.60893/figshare.apl.26363887
title: Supplemental materials

description: The supplementary materials for the fabrication of metal wire above polyimide substrate, schematical diagram of gold atoms penetrating into SiO2 layer, sample fabrication processes for XPS and EDS measurement, I-V characterization of the nanoelectrodes fabricated by EBL on different substrates, and so on.
DOI: 10.15468/dl.2qdwwk
title: Occurrence Download

description: A dataset containing 2434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salamandra lanzai Nascetti, Andreone, Capula & Bullini, 1988"
 ]
}

 The dataset includes 2434 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043366-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13143230
title: MANOLO_DeskResearchQuestionnaire_Dataset1_20240731_v1

description: The dataset includes the questions used to collect feedback from the MANOLO consortium regarding the project's "D1.1 Trustworthy Efficient AI for the Cloud-edge Deep Dive".
DOI: 10.5281/zenodo.13143231
title: MANOLO_DeskResearchQuestionnaire_Dataset1_20240731_v1

description: The dataset includes the questions used to collect feedback from the MANOLO consortium regarding the project's "D1.1 Trustworthy Efficient AI for the Cloud-edge Deep Dive".
DOI: 10.15468/dl.ght33u
title: Occurrence Download

description: A dataset containing 2107148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "PublishingOrg is 061b4f20-f241-11da-a328-b8a03c50a862",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2107148 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043351-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29ukqt
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Indicator archipelagicus Temminck, 1832"
 ]
}

 The dataset includes 476 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043367-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jap.26242214
title: Pseudopotential files

description: Pseudopotential files for silicon and vanadium
DOI: 10.60893/figshare.jap.26242214.v1
title: Pseudopotential files

description: Pseudopotential files for silicon and vanadium
DOI: 10.60893/figshare.jap.26242217
title: Calculation input and output files

description: Quantum-ESPRESSO code input and output files used to obtained the data as reported in the manuscript.
DOI: 10.60893/figshare.jap.26242217.v1
title: Calculation input and output files

description: Quantum-ESPRESSO code input and output files used to obtained the data as reported in the manuscript.
DOI: 10.60893/figshare.jap.26242223
title: Calculation input and output files

description: Quantum-ESPRESSO code input and output files used to obtain the data in the manuscript
DOI: 10.60893/figshare.jap.26242223.v1
title: Calculation input and output files

description: Quantum-ESPRESSO code input and output files used to obtain the data in the manuscript
DOI: 10.60893/figshare.jcp.26240267
title: Supplementary Information: First-principles study of plasmon-exciton coupling and charge transfer in a single porphine molecule sandwiched between Ag nanoparticles

description: Additional theory and calculations complementing the content of the main text.
DOI: 10.60893/figshare.jcp.26240267.v1
title: Supplementary Information: First-principles study of plasmon-exciton coupling and charge transfer in a single porphine molecule sandwiched between Ag nanoparticles

description: Additional theory and calculations complementing the content of the main text.
DOI: 10.15468/dl.txhynp
title: Occurrence Download

description: A dataset containing 28162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Grus antigone (Linnaeus, 1758), Grus antigone sharpii Blanford, 1895)"
 ]
}

 The dataset includes 28162 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043369-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vnrkt
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhabdotorrhinus exarhatus sanfordi Stresemann, 1932"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043371-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.26122039
title: Supplementary Information

description: Supplementary Tables S1-S9, Figure S1
DOI: 10.60893/figshare.jcp.26122039.v1
title: Supplementary Information

description: Supplementary Tables S1-S9, Figure S1
DOI: 10.4121/b2764d2c-5b8c-4daa-9526-048a1a412631.v1
title: Data underlying the longitudinal field study with AnimaTo included in Chapter 6 of the PhD thesis "Temporal, Unpredictable, Multisituated: Designing Performativity in Textile-forms for Multimorphism"

description: This project investigates the material experience, particularly the performativity, of an everyday textile-form artefact, namely AnimaTo. We designed AnimaTo to display morphing behaviour when exposed to water over two sequential stages: shrinking and unfolding. Then, we deployed AnimaTo in a two-week longitudinal study, presenting it as an ordinary tea towel and encouraging users to interact as they wished, guided by its evolving shape, size, and texture. We collected in-depth accounts of material experiences from eight households in the Netherlands, combining qualitative and quantitative methods. We collected quantitative and qualitative data via self-reporting, semi-structured interviews and a movement sensor embedded in the artefact. We analysed qualitative data through Thematic Analysis (TA) and qualitative data through summary statistics and visual analysis of the movement data. This dataset includes materials used to conduct the longitudinal field study (participant invitations, instruction cards, interview scripts), additional plots of raw data and a spreadsheet file including codes from the TA of the interviews.
DOI: 10.60893/figshare.jcp.26264201
title: Supplementary Material

description: Some calculations and procedures to obtain results on the main manuscript
DOI: 10.60893/figshare.jcp.26264201.v1
title: Supplementary Material

description: Some calculations and procedures to obtain results on the main manuscript
DOI: 10.15468/dl.3dtnaq
title: Occurrence Download

description: A dataset containing 843 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geomalacus maculosus Allman, 1843"
 ]
}

 The dataset includes 843 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043372-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gncumm
title: Occurrence Download

description: A dataset containing 853 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nisaetus bartelsi (Stresemann, 1924)"
 ]
}

 The dataset includes 853 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043373-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t58ce2
title: Occurrence Download

description: A dataset containing 226432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Diplopoda"
 ]
}

 The dataset includes 226432 records from 761 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043359-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9gp69
title: Occurrence Download

description: A dataset containing 17576 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthetrum sabina (Drury, 1773)"
 ]
}

 The dataset includes 17576 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043374-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13143211
title: 5G NR Full Grid Over-the-Air Measurements

description: This data set is collected for the full resource grid over-the-air measurements of 5G NR downlink tranmission. Some different scenarios including different numerologies, center frequencies, bandwidths and fading are included. Please refer to the PDF file in the folder for the detailed description of the scenarios
DOI: 10.5281/zenodo.13143212
title: 5G NR Full Grid Over-the-Air Measurements

description: This data set is collected for the full resource grid over-the-air measurements of 5G NR downlink tranmission. Some different scenarios including different numerologies, center frequencies, bandwidths and fading are included. Please refer to the PDF file in the folder for the detailed description of the scenarios
DOI: 10.11583/dtu.25845970
title: Data for "<i>INTROGRESSION AFFECTS SALMO TRUTTA JUVENILE LIFE-HISTORY TRAITS GENERATIONS AFTER STOCKING WITH NON-NATIVE STRAINS</i>"

description: Data for a study and paper in "Evolutionary Applications": DOI: 10.1111/eva.13725The file is a comma-separated file, where each row gives a phenotypes and sample information one of a total of 2799 juvenile brown trout (Salmo trutta, L.) raised under a common garden setup testing growth response to temperature treatment for family crosses with different genetic compositions. Each individual fish is denoted by its number ('Fish_ID'), the temperature treatment it was tested for ("Temperature_treatment"), total length in cm ("length"), wet weight in grammes ("weight"), ID and total length in cm of its father ("Sire_ID", "Sire_L"), ID and total length in cm of its mother ("Dam_ID", "Dam_L"), family number ("family_no"), type of cross ("cross_type"), age in days ("age_from_fert"), degree days since fertilisation ("deg_days"), date where phenotype data were recorded ("SampleDAY",SampleMONTH","SampleYEAR"), date where dam and sire were crossed ("CrossDAY",CrossMONTH","crossYEAR"). Notation follows data in tables and figures in Bekkevold et al. (accepted).<br>
DOI: 10.11583/dtu.25845970.v1
title: Data for "<i>INTROGRESSION AFFECTS SALMO TRUTTA JUVENILE LIFE-HISTORY TRAITS GENERATIONS AFTER STOCKING WITH NON-NATIVE STRAINS</i>"

description: Data for a study and paper in "Evolutionary Applications": DOI: 10.1111/eva.13725The file is a comma-separated file, where each row gives a phenotypes and sample information one of a total of 2799 juvenile brown trout (Salmo trutta, L.) raised under a common garden setup testing growth response to temperature treatment for family crosses with different genetic compositions. Each individual fish is denoted by its number ('Fish_ID'), the temperature treatment it was tested for ("Temperature_treatment"), total length in cm ("length"), wet weight in grammes ("weight"), ID and total length in cm of its father ("Sire_ID", "Sire_L"), ID and total length in cm of its mother ("Dam_ID", "Dam_L"), family number ("family_no"), type of cross ("cross_type"), age in days ("age_from_fert"), degree days since fertilisation ("deg_days"), date where phenotype data were recorded ("SampleDAY",SampleMONTH","SampleYEAR"), date where dam and sire were crossed ("CrossDAY",CrossMONTH","crossYEAR"). Notation follows data in tables and figures in Bekkevold et al. (accepted).<br>
DOI: 10.6084/m9.figshare.24083496.v1
title: Supplementary Material for: Flow cytometric characterization of HSPC subpopulations in autologous PBSC preparations after cryopreservation

description: Introduction: Autologous stem cell transplantation is a successful routine procedure with only a small number of non-engraftment cases, although the time to hematopoietic recovery may vary considerably across patients. While CD34 has been the decisive marker for enumerating hematopoietic stem and progenitor cell (HSPC) products for more than 30 years, the impact of CD34-positive cellular subpopulations in autologous HSPC grafts on hematopoietic reconstitution remains unclear.
Methods: The two-color ISHAGE protocol represents the current gold standard for CD34+ cell enumeration but includes only the number of viable CD45+/CD34+ cells relative to the body weight (bw) of the recipient. We adapted a multicolor flow cytometry marker panel for advanced characterization of CD34 subpopulations in retained samples of autologous PBSC products (n = 49), which had been cryostored for a wide range from 4-15 years. The flow cytometric analysis included CD10, CD34, CD38, CD45, CD45RA, CD133 and viability staining with 7AAD. The findings were correlated with clinical engraftment data, including reconstitution of leukocytes, neutrophils, and platelets after transplantation (TPL).
Results: We demonstrated that the identification of autologous HSPC subpopulations by flow cytometry after cryopreservation is feasible. Regarding the distribution of HSPC subpopulations, a markedly different pattern was observed in comparison to previously published data obtained using fresh autologous material. Our data revealed the largest ratio of lympho-myeloid progenitors (LMPPs) after freezing and thawing, followed by multipotent progenitors (MPPs) and erythroid-myeloid progenitors (EMPs). A high ratio of LMPPs, representing an immature stage of differentiation, correlated significantly with early neutrophilic granulocyte and leukocyte engraftment (p = 0.025 and p = 0.003). Conversely, a large ratio of differentiated cells correlated with late engraftment of neutrophilic granulocytes (p = 0.0235). Overall, successful engraftment was documented for all patients.
Conclusion: We established an advanced flow cytometry panel to assess the differentiation ability of cryostored autologous PBSC grafts and correlated it with timely hematopoietic reconstitution. This approach represents a novel and comprehensive way to identify hematopoietic stem and progenitor subpopulations. It is a feasible way to indicate the engraftment capacity of stem cell products.
DOI: 10.6084/m9.figshare.24083496
title: Supplementary Material for: Flow cytometric characterization of HSPC subpopulations in autologous PBSC preparations after cryopreservation

description: Introduction: Autologous stem cell transplantation is a successful routine procedure with only a small number of non-engraftment cases, although the time to hematopoietic recovery may vary considerably across patients. While CD34 has been the decisive marker for enumerating hematopoietic stem and progenitor cell (HSPC) products for more than 30 years, the impact of CD34-positive cellular subpopulations in autologous HSPC grafts on hematopoietic reconstitution remains unclear.
Methods: The two-color ISHAGE protocol represents the current gold standard for CD34+ cell enumeration but includes only the number of viable CD45+/CD34+ cells relative to the body weight (bw) of the recipient. We adapted a multicolor flow cytometry marker panel for advanced characterization of CD34 subpopulations in retained samples of autologous PBSC products (n = 49), which had been cryostored for a wide range from 4-15 years. The flow cytometric analysis included CD10, CD34, CD38, CD45, CD45RA, CD133 and viability staining with 7AAD. The findings were correlated with clinical engraftment data, including reconstitution of leukocytes, neutrophils, and platelets after transplantation (TPL).
Results: We demonstrated that the identification of autologous HSPC subpopulations by flow cytometry after cryopreservation is feasible. Regarding the distribution of HSPC subpopulations, a markedly different pattern was observed in comparison to previously published data obtained using fresh autologous material. Our data revealed the largest ratio of lympho-myeloid progenitors (LMPPs) after freezing and thawing, followed by multipotent progenitors (MPPs) and erythroid-myeloid progenitors (EMPs). A high ratio of LMPPs, representing an immature stage of differentiation, correlated significantly with early neutrophilic granulocyte and leukocyte engraftment (p = 0.025 and p = 0.003). Conversely, a large ratio of differentiated cells correlated with late engraftment of neutrophilic granulocytes (p = 0.0235). Overall, successful engraftment was documented for all patients.
Conclusion: We established an advanced flow cytometry panel to assess the differentiation ability of cryostored autologous PBSC grafts and correlated it with timely hematopoietic reconstitution. This approach represents a novel and comprehensive way to identify hematopoietic stem and progenitor subpopulations. It is a feasible way to indicate the engraftment capacity of stem cell products.