cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/phzdzr487g
title: NDVI measurements connected to specific N fertilisation levels and management zones.

description: Dataset 1 represents a collection of NDVI measurements connected to specific N fertilisation levels and management zones. Dataset 2 represents geo- referred soil samples collected at 0-20 cm depth, following a random grid (40 m) spatial survey, collected before sowing and after tillage, used for the delineation of the management zones. The two datasets were used to check the effectiveness of two nitrogen fertilisation management strategies, one based on management zones and one on crop data. The two datasets provide rules for choosing the best strategy based on the dimension of spatial structure of the available information. More details are reported in the paper “Cordero, E., Longchamps, L., Khosla, R., Sacco, D., 2019. Spatial management strategies for nitrogen in maize production based on soil and crop data. Science of the Total Environment 697, 133854. Doi: https://doi.org/10.1016/j.scitotenv.2019.133854”
DOI: 10.6084/m9.figshare.12459065.v7
title: Dataset - Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions

description: Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function relationships (iBEFs) have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (<i>Phoxinus phoxinus</i>), to test whether iBEFs exist in consumer species, and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or in interaction. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, both losses in genotypic and functional richness altered essential functions (e.g. decomposition) through trophic cascades. We concluded that iBEFs lead to substantial top-down effects on entire food chains. The loss of genotypic richness was similarly prejudicial than the loss of functional richness, probably because it sustains “cryptic” functional diversity.
DOI: 10.6084/m9.figshare.25152158.v1
title: Supplementary Material for: Successful Management of Familial Exudative Vitreoretinopathy with a Large Macular Hole Using Inverted Internal Limiting Membrane Flap Technique

description: <b><i>Introduction:</i></b> This case report aims to shed light on a rare presentation of familial exudative vitreoretinopathy (FEVR) co-existing with a large full-thickness macular hole (FTMH) in a 16-year-old male and discuss its successful surgical management, thereby adding to the limited existing knowledge on this topic. <b><i>Case Presentation:</i></b> Over an 8-month period, the patient had experienced progressively worsening visual blurring and distortion in his left eye. Following a comprehensive examination, diagnosis confirmed FEVR and an accompanying large FTMH. It was hypothesized that this unusual manifestation resulted from the tractional forces exerted by a thick posterior vitreous membrane and a thin epiretinal membrane – a distinctive attribute of FEVR. The patient underwent surgical intervention, which included pars plana vitrectomy (PPV), internal limiting membrane (ILM) peeling, gas tamponade, and the inverted ILM flap technique. Postoperative outcomes were favorable, with the FTMH successfully closed and substantial improvement observed in the patient’s visual acuity at the 3-month follow-up visit. <b><i>Conclusion:</i></b> This case report highlights a rare association of FEVR with FTMH, thereby broadening our understanding of potential complications in patients with FEVR. The successful surgical intervention reinforces the utility of the PPV and the inverted ILM flap technique in managing such complications. It underscores the need for clinicians to maintain vigilance for such atypical manifestations in FEVR patients.
DOI: 10.17632/636vgmk272
title: zs-hematology-MM01

description: The data included whole-exome sequencing data of 49 newly diagnosed DS stage III MM patients who received standard first-line therapy and did not undergo autologous stem cell transplantation, 7 patients with relapsed or refractory MM, and 7 patients with newly diagnosed monoclonal gammopathy of unknown significance between July 2017 and October 2019 at the department of hematology, Zhongshan hospital Fudan University.
DOI: 10.6084/m9.figshare.12052950.v3
title: Opportunistic screening for diabetes mellitus and hypertension in primary care settings of Karnataka, India : few steps forward but still some way to go- Raw Data

description: Increasing burden of non-communicable diseases is an important public health concern in developing counties. To address this, the national non-communicable diseases programme was rolled out in India. A thorough understanding of operational issues involved in opportunistic screening of diabetes mellitus (DM) and hypertension (HTN) at primary health facilities is critical in meeting the objectives of this programme. Most of the studies so far have not responded to this need. Our study provides valuable insights regarding this which will guide the programme managers to take corrective measures.The objective was to determine the number and proportion eligible for screening, number screened, diagnosed and treated for DM and HTN among persons aged ≥30 years in two selected primary health centres (PHCs) in Dakshina Kannada district, Karnataka, India during March-May 2019 and to explore the enablers and barriers in the implementation of screening from the perspective of the health care providers (HCPs) and beneficiaries . This was a sequential explanatory mixed-methods study with a quantitative (cohort design) and a descriptive qualitative component (in-depth interviews and focus group discussions) with HCPs and persons seeking care. Those that were not known DM/HTN and not screened for DM/HTN in one year were used to estimate persons eligible for screening. This consists of the raw data sheets of the study and includes the de-identified participant results from the quantitative study and the de-identified transcripts from the focused group discussions and key informant interviews. I
DOI: 10.6084/m9.figshare.28407812.v1
title: EB-EVP TCM Paper -SCOPUS-DATA.xlsx

description: EB-EVP TCM Paper -SCOPUS-DATA
DOI: 10.17632/w8msskkp9n
title: An Investigation of Africans and Hongkongers relationship

description: This data explores Africans' and Hongkonger's relationship.
DOI: 10.6084/m9.figshare.24417031.v1
title: BP in Hemodialysis patients.xlsx

description: BP in a cohort of Hemodialysis patients. Data include patient demographics, antihypertensive drug use and Pre-intra and post blood pressure in each dialysis, including a total 2616 hemodialysis sessions.
DOI: 10.17605/osf.io/rk6qs
title: EmbodiedWorkshop2024-dataset

description: Concurrent physiological measurements from participants at a multi-day worshop between education, music, and technology researchers. During a variety of presentations, discussions, and activities on embodied cognition, learning, rhythm, and dance, a couple dozen researchers and students wore sensor systems and were recorded during various activities. This data set shares concurrent physiological and audio visual measurements from those who agreed to make their measurements and recordings available for open science research.
DOI: 10.17632/f4zt4myrb7
title: Cryptocurrency dataset (1984-2020)

description: The Cryptocurrency research & publication dataset, which was indexed by Scopus from 1984 to 2020. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.25939258.v1
title: database for the rural atlas of chile.

description: The dataAtlas, Rurality, Clúster, Affinity Propagation, Geographic Information Systems stored below are associated with the different characteristics of the rural territories of Chile, to agglomerate territories based on domains and indicators, such as: Demographic, Natural Areas, Productive Sector, Geography and Territory, Accessibility, Culture. These data are the result of different processes, the first one associated to the crossing between geospatial variables (geomorphology, climate, land use, among others) with the selection of rural and mixed districts. The second set of data is related to the data dictionary, this information base (Excel) has the necessary indicators to run the clustering model. Third, the data of the 95 clusters established during the AP clustering process. Fourth, the data on the 34 typologies finally established for the rural territory of Chile are presented.
DOI: 10.6084/m9.figshare.14276727.v1
title: (Lack of) oral hygiene care for hospitalized elderly patients

description: ABSTRACT Objective: to analyze the oral hygiene care for hospitalized elderly patients provided by the nursing staff. Method: this is a qualitative, exploratory-descriptive study carried out in a university hospital, with the participation of 35 professionals from the nursing staff. Data collection was carried out through semi-structured interviews, explored through thematic content analysis. Results: two categories emerged: The oral hygiene of hospitalized elderly patients as an extension of body care and Barriers in (lack of) care with the oral hygiene of hospitalized elderly patients, with two subcategories: The oral hygiene and dental prosthesis technique performed divergently; Care hampered by deficit of materials and human resources. Final considerations: this study showed weaknesses in the oral hygiene care of hospitalized elderly patients, promoting reflections on the practice informed in data and management actions, allowing recommendations of care standards for the nursing staff.
DOI: 10.6084/m9.figshare.25560924.v1
title: grainsapce wheat p600 1/3

description: grainsapce wheat p600 1/3
DOI: 10.6084/m9.figshare.26310781.v1
title: ProjecTILs human reference atlas of tumor-infiltrating and blood Dendritic Cells (DC), version 2

description: ProjecTILs human reference atlas of blood and tumor-infiltrating Dendritic Cells (DC), generated by semi-supervised STACAS integration of 11 scRNA-seq datasets spanning 5 cancer types. The datasets were obtained from Gerhard et al. JEM, 2020, as well as Villani et al. Science, 2017, for the blood samples.The dataset is available as a Seurat object, with subtype labels (functional.cluster), sample of origin and several other measurement for each cell stored in the object metadata. The object can be directly used as a reference atlas for ProjecTILs (Andreatta et al. Nat Comms 2021) or HiTME tools.<b>v2 updates:</b><b>Downsampling of cDC2_CLEC10A subset</b><b>Splitting MonoDC subset into: MonoDC_CD14, MonoDC_CD16, and MonoDC_DN</b>Code for its generation can be found at: https://github.com/carmonalab/DC_atlasv1 found at https://doi.org/10.6084/m9.figshare.22041191
DOI: 10.7910/dvn/wujrz7
title: Replication Data for: When Does Employee Turnover Matter? Analyzing the Role of Organizational Memory in the Federal IT Workforce

description: This database contains the data replication file materials for "When Does Employee Turnover Matter? Analyzing the Role of Organizational Memory in the Federal IT Workforce."
DOI: 10.17632/2vvny3xd85
title: Modelled benthic oxygen flux for the German Bight

description: These data include simulation results of benthic-pelagic coupled model ECOSMO+TOCMAIM. Each excel file contains 8 columns, representing time (decimal unit), Organic carbon pool 1+2 in surface sediments (in percentage), macrobenthos biomass (g C/m2), biodiffusivity (cm2/day), advective flux of oxygen (micromol/m2/h), molecular diffusive flux of oxygen (micromol/m2/h), bioturbation diffusive flux of oxygen (micromol/m2/h), total oxygen flux (micromol/m2/h), respectively. Source code of the benthic model TOCMAIM with a coupling interface to 3-D hydrodynamic biogeochemical modelsis also provided.
DOI: 10.6084/m9.figshare.25406434.v1
title: MERFISH data

description: MERFISH data used for Panpipes GitHub Action, provided here https://info.vizgen.com/mouse-brain-map?submissionGuid=a66ccb7f-87cf-4c55-83b9-5a2b6c0c12b9
DOI: 10.6084/m9.figshare.28374908.v1
title: Supplementary Material for: Function of Transforming growth factor-β2 and -β3 in palatogenesis

description: Abstract
Introduction: This study aimed to examine the transforming growth factor (TGF)-β signaling pathway during secondary palate fusion by transfecting single and double small interfering RNA (siRNAs) for TGF-β2 and -β3. This investigation also focused on understanding the phenotype of palatal development.
Methods: siRNAs targeting TGF-β2 and -β3 were used in an organ culture model of fusion of the secondary palate of 13-day embryonic ICR mice cultured for up to 72 h. The palatal shelves were collected at different times following the initiation of organ culture and were examined for TGF-β2 and -β3 gene expression. Downstream signaling was characterized using western blotting and PCR.
Results: In the double siRNA-treated palatal shelves, approximately 90% (91% anterior, 89% posterior with phenotype A) showed fusion failure in hematoxylin and eosin staining. Phosphorylation of Smad-dependent and -independent signaling showed a significant reduction in phosphorylation in double knockdown palate organ cultures when compared to single knockdown cultures. Although, the expression of MMP13 and TIMP2 were small influenced by siTGF-β2, the extracellular matrix and transcription factor expressions showed to be significantly reduced in double knockdown palate compared to single knockdown palates.
Conclusions: This study demonstrates that double siRNAs targeting TGF-β2 and -β3 results in phenotypes during secondary palatal fusion and that they could be affected phosphorylation of Smad- dependent and -independent signaling synergistically compared to single knockdown of TGF-β2 and -β3. The results of this study demonstrate important functions during secondary palatal fusion and will contribute to our understanding of the etiology of cleft palate.
DOI: 10.17632/w222dby553
title: Los Angeles County soil patch metrics

description: Data summarizing unsealed soil surface delineations in the southern half of Los Angeles County, USA. Delineations were made by interpreting high-resolution aerial photographs in a random sample of 1-hectare hexagons. The data set includes the number of soil patches in each hexagon, the proportion of the hexagon that is soil, the size of the largest soil patch, the mean perimeter-area ratio for soil patches, interpolated ATSDR/CDC Social Vulnerability Index value for the hexagon location, and latitude/longitude coordinates.
DOI: 10.4121/21154606.v1
title: Input data for the master thesis “Security of supply during the energy transition”

description: This dataset contains the input data needed to run the AMIRIS-EMLab simulation for the Dutch scenario. The dataset consists of: - Installed power plants in Germany in 2020. - Installed power plants in the Netherlands in 2020. - Load demand curve for the Netherlands in 2020. - Load demand curve for the Netherlands in 2050 in a "dunkelflaute" scenario.
DOI: 10.6084/m9.figshare.25421050.v1
title: 12 Claims Management

description: Supplementary material for the paper “LLM-Assisted Optimization of Waiting Time in Business Processes: A Prompting Method” by K. Lashkevich et al. submitted to BPM'24.
DOI: 10.6084/m9.figshare.27321450.v3
title: A Resilient Atlantic Meridional Overturning Circulation in the Near Future

description: Statistical methods generally predict a possible tipping of the Atlantic Meridional Overturning Circulation (AMOC) in the near future, suggesting that the climate models overestimate the stability of AMOC. While the observations show a stable AMOC during the past decades, suggesting otherwise. Based on the MITgcm-ECCO2, here we show that the biases in the simulated Arctic sea ice and freshwater content as well as the water transport across various straits/passages around the Arctic play a key role in the future stability of AMOC in the climate models.
DOI: 10.17632/3h635bg8mh
title: Dataset: Air Quality Index (AQI) of Major Indian Cities and Stations 21/4/2024

description: The dataset contains air quality information for various cities across India. It includes parameters such as Air Quality Index (AQI), concentrations of particulate matter (PM2.5 and PM10), ozone (O3), nitrogen dioxide (NO2), sulfur dioxide (SO2), carbon monoxide (CO), as well as geographical coordinates and time stamps. This dataset enables analysis and comparison of air quality levels among different cities, aiding in understanding environmental health impacts and informing policy decisions.
DOI: 10.6084/m9.figshare.19929104.v1
title: Physiological indices of irrigated rice affected by flooding and nitrogen fertilization

description: ABSTRACT The management of water and nitrogen are among the necessary actions to achieve high yield potential in irrigated agricultural systems. The objective of this study was to determine the influence of time of the beginning of flood and N topdressing, in the development stages from V3 - V4 until V12 - V13, on physiological characteristics positively related to grain yield of irrigated rice cultivar BRS Jaçanã in a tropical wetland. A field experiment was conducted at Palmital farm of Embrapa Rice and Beans, Goianira, GO, Brazil, in a Dystrophic Haplic Gleysol, for two consecutive years. The experimental design was completely randomized with six replications arranged in a split-plot scheme. The main plots were comprised by the times of the beginning of flood and subplots by the times of N topdressing of 90 kg ha-1. For both factors, the times were set as 15, 30, 45, and 60 days after emergence, which corresponded to the vegetative development stages V3 - V4, V6 - V7, V9 (VF-4) - V10 (VF-3), and V12 (VF-1) - V13 (VF). As flood delays, tillering, leaf area ratio, and specific leaf area increase and shoot biomass, leaf area index, and leaf area duration decrease. Late N fertilization timing also provides decrease in these physiological indices. Delay in flooding and N fertilization reduced more leaf area than rice grain yield, resulting in higher leaf area efficiency. Nitrogen topdressing performed at the beginning of tillering and continuous flooding at the middle tillering stage result in increased physiological indices, such as leaf area ratio, leaf area index, and leaf area duration, which provide increase in irrigated rice grain yield.
DOI: 10.17632/xfs5tpbx6j
title: original data of METTL5-mediated 18S rRNA m6A modification promotes oncogenic mRNA translation and intrahepatic cholangiocarcinoma progression

description: Intrahepatic cholangiocarcinoma (ICC) is a highly lethal malignancy characterized by rapid tumor progression. Hyperactive mRNA translation driven by mis-regulated RNA modifications has emerged as an essential oncogenic mechanism in ICC. While mRNA and tRNA modifications have been intensively studied, the function and mechanism of ribosomal RNA (rRNA) modifications, however, remain poorly understood in cancer biology. 
18S rRNA m6A is one of the two m6A modification in human rRNA catalyzed by methyltransferase METTL5. Despite its emerging functional importance in regulation of stem cell fate and growth, the role of 18S rRNA m6A modification in cancers remains largely unclear. Here we found that 18S rRNA m6A modification and METTL5 are aberrantly upregulated in ICC and associate with poor clinical survival. We further revealed the critical role of METTL5-mediated 18S rRNA m6A modification in regulation of ICC cell growth and metastasis using loss- and gain-of function assays in vitro and in vivo. The crucial oncogenic function of METTL5 was further corroborated using liver-specific knockout and overexpression ICC mouse models. Mechanistically, METTL5 depletion impairs 18S rRNA m6A modification level that hampers ribosome synthesis, which preferentially results in the translation inhibition of G-quadruplexes-containing mRNAs that enriched in many oncogenic signals including TGF-beta pathway. 
There are two novel findings in this original research. First, we disclose the important physiological functions of METTL5-mediated 18S rRNA m6A modification in ICC, uncovering an important link between rRNA modifications and cancer development. Second, we find that METTL5-mediated 18S rRNA m6A modification preferentially modulate the translation of certain oncogenic transcripts containing G-quadruplexes and shorter 5’-UTR length due to the impaired ribosome synthesis. Excepting mRNA and tRNA modifications, our study reveals an additional layer of selective regulation of gene expression mediated by rRNA modification, providing new strategies targeting abnormal translation for effective ICC treatment from rRNA modification layer.
DOI: 10.6084/m9.figshare.19610070.v3
title: Clinical Profile and Outcome of Acute Kidney Injury in a Tertiary Care Center of Eastern Nepal

description: Excel dataset, consent format, proforma
DOI: 10.17632/4ksvttht8c
title: Time series of mesoplastics and microplastics abundance from two sandy beaches in Taiwan

description: This dataset presents microplastics and mesoplastics abundances, shapes and colors from samples collected from two sandy beaches at the northern coast of Taiwan. Samples where collected from Longmen Beach (25.02951°N, 121.9355°E) and from Xialiao Beach (25.21469°N, 121.65406°E). The data set consists of three cvs-files for Longmen Beach and three csv-files for Xialiao Beach. Each of these files contains data about the abundance of particles, shapes, and colors. For a detailed description of sampling location, sampling procedure, plastic particle extraction and counting please refer to: ...

Each table contains following data:
Date_YYYY-MM-DD = sampling date in the form of year-months-day
Country_Region = country or region where samples were collected
Location_name = name of the beach where samples were collected
Location_lat = coordinates of the sampling location (latitude / N)
Location_lon = coordinates of the sampling location (longitude / E)
Transect = A letter A, B, C for each of the three transects. Transects are 1 m apart from each other and run perpendicular to the water line starting in the dunes and ending at the intertidal.
Position = 50 x 50 cm quadrat from which the samples were taken. Numbering starts in the dunes with 1 and ends at the intertidal.
Size_min_mm = lower particle size in mm
Size_max_mm = upper particle size in mm
Size_class = name of the size class for plastic pieces (microplastics or mesoplastics)
Particle_count = number of plastic particles in a sample (only in file "... particle count.csv")
Particle_weight_g = weight of the plastic particles found in a sample (only in file "... particle count.csv")
Weight_dry_sand_g = dry weight of the sand before plastic particles were extracted (only in file "... particle count.csv")
Beach_Zone = beach zone in which the sample was collected (only in file "... particle count.csv")

Shapes were classified into following categories: fragment, foamed_plastic, pellet, foil, fiber, fishing_line, cigarette_butt, rope, rubber, fabric, unclear.

Colors were classified into following: no_color, black, grey, red_pink, orange_brown_yellow, green, blue, purple