cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22361821.v1
title: Supplementary Material for: LINC01002 targets miR-650/FLNA pathway to suppress prostate cancer progression

description: Introduction: In view of the vital implication of long non-coding RNAs (lncRNAs) in tumorigenesis, we possess the aim to determine the action effects and mechanisms of LINC01002 in prostate cancer (PCa). Methods: Expression level of LINC01002, miR-650 or filamin A (FLNA) in PCa tissues and cells was assessed using quantitative real-time PCR (qPCR) or western blotting. Cell proliferative and migratory capacities were investigated by Cell Counting Kit-8 (CCK8) and wound healing assays. Cell apoptosis was investigated by the levels of Bax and Bcl-2. Xenograft models were constructed to testify the role of LINC01002 in vivo. The anticipated binding of miR-650 to LINC01002 or FLNA was confirmed by dual-luciferase reporter or RNA Binding Protein Immunoprecipitation (RIP) assays. Results: Relatively poor expression of LINC01002 and FLNA, and high expression of miR-650 were identified in PCa tumor specimens and cells. Ectopic LINC01002 expression restrained PCa cell proliferation/migration and provoked apoptosis in vitro, and blocked solid tumor growth in Xenograft models. MiR-650 was directly targeted by LINC01002, and it also directly bound to FLNA. MiR-650 reintroduction in PCa cells overexpressing LINC01002 or FLNA partly reversed the anti-cancer effects of LINC01002 or FLNA overexpression, thus recovering PCa cell proliferation/migration and repressing apoptosis. Conclusion: LINC01002 deregulation was linked to PCa development. LINC01002 exerted potential anti-cancer effects in PCa via targeting the miR-650/FLNA pathway, which, at least in part, provided a basis for the involvement of LINC01002 as a therapeutic target in PCa.
DOI: 10.6084/m9.figshare.27753855.v1
title: Supplementary Material for: Who changes indwelling urinary catheters in male nursing home residents and where? Results from a nationwide cross-sectional survey in Germany

description: Introduction: We examined the practice and variability of indwelling urinary catheter changes in male nursing home residents.

Methods: Cross-sectional data from a nationwide survey conducted in a representative sample of German nursing homes in 2023 were analyzed. The professions conducting most transurethral/suprapubic catheter changes in men were identified and proportions for whom respective catheters are changed in nursing homes were determined. Associations between these proportions and nursing home characteristics were investigated via multivariable logistic regressions.

Results: Of 1,369 invited facilities, 330 (24.1%) participated. Urologists changed most catheters in 72.8% (transurethral catheters) and 88.3% (suprapubic catheters) of the facilities. The median proportion of men whose catheters were changed in nursing homes was 8.5% (transurethral catheters; interquartile range 0.6%–100.0%) and 1.0% (suprapubic catheters; IQR 0.0%–100.0%). Facilities in which urologists changed most catheters were less likely to have a high proportion (≥90%) of in-home catheter changes compared to the reference group (odds ratio 0.44 [transurethral catheters; 95% confidence interval 0.24–0.82] and 0.30 [suprapubic catheters; 0.12–0.76]).

Conclusion: The proportion of men whose catheters were changed in nursing homes varied considerably between facilities and was lower where urologists were involved.
DOI: 10.6084/m9.figshare.28783106.v1
title: Mosquito species data at SLP city

description: This data set contains mosquito species collected during one year in San Luis Potosí (Mexico) city. It also contains socioecological and economical data as predictors of mosquito richness and abundance.
DOI: 10.6084/m9.figshare.5255686
title: nLDE SPARQL engine: computing diefficiency metrics based on answer traces and query processing performance benchmarking

description: This dataset contains results of various metric tests performed in the SPARQL query engine nLDE: the network of Linked Data Eddies, in different configurations. The queries themselves are available via the nLDE website and tests are explained in depth within the associated publication.To compute the diefficiency metrics <b><i>dief@t</i></b> and <b><i>dief@k</i></b>, we need the answer trace produced by the SPARQL query engines when executing queries. <b>Answer traces</b> record the exact point in time when an engine produces an answer when executing a query.<br>We executed SPARQL queries using three different configurations of the nLDE engine: <code>Selective</code>, <code>NotAdaptive</code>, <code>Random</code>. The resulting answer trace for each query execution is stored in the CSV file `nLDEBenchmark1AnswerTrace.csv`. The structure of this file is as follows: <b>`query`</b>: id of the query executed. Example: 'Q9.sparql'<b>`approach`</b>: name of the approach (or engine) used to execute the query.<b>`tuple`</b>: the value `i` indicates that this row corresponds to the ith answer produced by `approach` when executing `query`.<b>`time`</b>: elapsed time (in seconds) since `approach` started the execution of `query` until the answer `i` is produced.In addition, to compare the performance of the nLDE engine using the metrics <i>dief@t</i> and <i>dief@k</i> as well as <b>conventional metrics</b> used in the query processing literature, such as: <i>execution time</i>, <i>time for the first tuple</i>, and <i>number of answers produced</i>. We measured the performance of the nLDE engine using conventional metrics. The results are available at the CSV file i`nLDEBenchmark1Metrics`. The structure of this CSV file is as follows:<b>`query`</b>: id of the query executed. Example: 'Q9.sparql'<b>`approach`</b>: name of the approach (or engine) used to execute the query.<b>`tfft`</b>: time (in seconds) required by `approach` to produce the first tuple when executing `query`.<b>`totaltime`</b>: elapsed time (in seconds) since `approach` started the execution of `query` until the last answer of `query` is produced.<b>`comp`</b>: number of answers produced by `approach` when executing `query`.
DOI: 10.17632/4sh6s766fj
title: Attributes that build Florianópolis Brand Identity in the Technological Context

description: This dataset explores the key attributes that contribute to the construction of the brand identity of Florianópolis within the technological context. It includes insights derived from documentary research and open data collected from interviews. The data is structured to support studies on regional branding, innovation ecosystems, and the role of technology in urban identity development.
DOI: 10.17632/78pwtzstz6
title: A new geophysical and geospatial dataset from the Quaternary basin of Norcia (central Italy)

description: We provide the entire dataset of the paper "Dataset of seismic ambient vibrations from the Quaternary Norcia basin (central Italy)" submitted to "Data in Brief" journal, including geophysical and geospatial data. The dataset was used and analysed in the article: Di Giulio, G., Ercoli, M., Vassallo, M., Porreca, M. (2020). Investigation of the Norcia basin (Central Italy) through ambient vibration measurements and geological surveys, Engineering Geology, 267, 105501, https://doi.org/10.1016/j.enggeo.2020.105501 The geophysical dataset was collected in the Norcia basin in Central Italy, area struck by a long earthquake sequence during the 2016-2017, including five main-shocks with Mw&gt;5.0. The Mw 6.5 mainshock occurred on 30 October 2016 close to the town of Norcia. Different degrees of damages were observed during this seismic crisis, with a variable seismic shaking controlled, among many factors, by important 1D and 2D variation of Quaternary fluvio-lacustrine sediments infilling the basin. Following this seismic sequence, we registered seismic vibration measurements, mainly single-seismic station noise data. We aimed to determine the distribution of resonant frequency (f0) of the basin and, though a join analysis with the available geological information, to infer the subsurface basin architecture. A total of 60 sites were measured to cover the entire extension in the basin. We deployed seismometers along three transects of a total length of 21 km, mostly along the main structural directions of the basin (i.e. NNW-SSE and NE-SW). Two 2D arrays of seismic stations with a elicoidal-shaped geometry, and a set of MASW active data were also acquired in the northern sector of the basin, in order to better constrain the seismic velocity of the sedimentary infilling. In comparison to the data used in the paper Di Giulio et al. (2020), seven additional records have been here recovered across the basin (i.e. N54-N60). We also provide geospatial ancillary data, both as a complete open-source Geographical Information Systems (GIS) project and as a set of single GeoPackage (.gpkg) and Keyhole Markup Language (.kml) files. The dataset can be used for different purposes: specific researches on the Norcia basin, comparative studies on similar areas around the world, development of new data modeling/analysis software.
DOI: 10.6084/m9.figshare.19236777.v1
title: Statlog (Heart) Data Set

description: Adaptation of http://archive.ics.uci.edu/ml/datasets/Statlog+(Heart)<br>Ready for usage with ehrapy
DOI: 10.6084/m9.figshare.23586204.v1
title: S Data 1 - MAGs statistics file

description: Chloroflexota MAGs statistics file
DOI: 10.6084/m9.figshare.25809853.v1
title: data for postharvest tomato.xlsx

description: this is the raw data for the articl tiltled '<b>Impact of pre-harvest fungicide application on the storage performance of tomato fruits</b>'.
DOI: 10.6084/m9.figshare.26364181.v1
title: sim00000000.zip

description: Example simulation data file human eye retina
DOI: 10.6084/m9.figshare.28912124.v3
title: The People vs Dating Apps - A Design Justice Zine

description: This zine was created as part of my Design Justice module coursework on my Human-Computer Interaction (HCI) Master’s programme. There are two files: a PDF for viewing online and an A5 print-ready PDF of the zine.It explores the harms embedded in dating app design through a fictional court case that puts dating apps on trial. From algorithmic bias to insufficient safety measures, the zine critically examines how these platforms have prioritised profit over people.It's not you, it's them.
DOI: 10.17632/3g2s8p5jzz
title: International Oil Price and Sectoral Output Asymmetry data of the Philippines

description: The dependent variables of this study are the value added outputs of the Philippine economy's agriculture (agr) , industry (ind) , and service (ser) sectors measured in million Philippine pesos at constant 2018 prices. The international crude oil price (wop) is the simple average of three spot prices: Dated Brent, West Texas Intermediate, and the Dubai Fateh. The Crude oil unit is U.S. Dollar per barrel as obtained from the World Bank published by Index Mundi. Macroeconomic variables were also included in the model, such as real effective exchange (Ex) rate (Peso per U.S. Dollar) weighted average rate under the Philippine Dealing System (PDS) as obtained from the Bangko Sentral ng Pilipinas (BSP). The short-term interest rate (IntR) -91-day Treasury bill rate from the BSP was used as the monetary response variable to control oil shocks' inflationary effect. The wholesale price index (WPI) was used as a proxy for domestic inflation (Inf). Gross capital formation measured in million Philippine pesos at constant 2018 price was used to proxy investment (Inv). InfR and Inv were both obtained from the Philippines Statistical Authority (PSA). The outputs for agriculture, industry, and services as well as the gross capital formation were transformed into natural logarithm.
DOI: 10.17632/cybmt37r2m
title: Appendix files for 'Molecular insights into information processing, developmental and immune regulation of Eriocheir sinensis megalopa under hyposaline stress'

description: Appendix files for DEGs in this experiment and primers used for qPCR validation.
DOI: 10.6084/m9.figshare.25262674.v1
title: BRAKER3 ab-initio gene predictions

description: BRAKER3 ab-initio gene predictions for Xenos peckii de novo genome assembly
DOI: 10.6084/m9.figshare.29053283.v1
title: Coverage SRR5836474

description: Differential methylation
DOI: 10.6084/m9.figshare.8323163.v1
title: pacbio_dastool_high_quality_dasbins.contigs

description: PacBio dastool high quality bins
DOI: 10.17632/zgx8bshzy2
title: Importance of elongation and organogenesis on rhizome length of Zostera marina in an Individual-based simulation model, datasets.
DOI: 10.6084/m9.figshare.25691040.v1
title: COVID-19 Tobacco User Dissertation Data

description: The coronavirus disease (COVID-19) pandemic has spread in the US with more than 100 million people getting COVID-19 and more than a million deaths since March 2020. A population of concern are high-risk individuals such as adults who use tobacco since COVID-19 is a respiratory disease that affects the lungs. Although 79% of the US population ≥ 18 years of age have completed the primary COVID-19 vaccine series, it is imperative to understand the factors associated with receiving or declining the COVID-19 vaccine among high-risk populations to improve vaccination rates. Guided by the diffusion of innovations (DOI) theory, this study identified factors related to COVID-19 vaccination and its impact on COVID-19 vaccine uptake in adults who use tobacco.We conducted a cross-sectional study using a sample of Pennsylvanian adults who use tobacco by emailing a unique survey link to 4,081 email addresses in April 2022. Participants were asked about tobacco use, COVID-19 vaccination status, and reasons for receiving/declining the COVID-19 vaccine. Participants (n=157) were 75% female, 96% White, 74% current tobacco users, and had a mean age of 50.1 (SD=10.8) years. Nearly 78% (n=119) received at least one dose of the COVID-19 vaccine (primary series). We categorized all vaccinated tobacco users into adopter categories of the DOI theory; innovators (10%), early adopters (14%), early majority (33%), late majority (11%), and laggards (32%). The major reason that prompted participants to get the COVID-19 vaccine were to protect them against COVID-19 infection (77%). Additionally, the only reason for receiving the vaccine that significantly predicted early vaccine uptake (being an innovator or early adopter) was “to loosen restrictions on mask mandates and social/physical distancing” (p=0.0180). Among the 22% that did not receive a COVID-19 vaccine, the most common major reason they declined the vaccine was because they felt politics played a big role in the vaccine development process (94%).Our findings suggest that major factors that influenced why adults who use tobacco would receive or decline the COVID-19 vaccine included infection control mandates, protection from the COVID-19 infection, and politics. Investigating these factors can help public health professionals to tailor future vaccination programs to high-risk populations which may increase vaccine rates.
DOI: 10.6084/m9.figshare.27215451.v1
title: Supplementary Data file 1-10

description: <b>List of the Supplementary Data file 1-10:</b><br>Supplementary Data file 1: The volcano plots for each infection and timepoint<br>Supplementary Data file 2: The OPLS-DA plots for each infection and timepoint<br>Supplementary Data file 3: Normalized metabolite peak intensity (positive ion mode) in four phage infections and control populations<br>Supplementary Data file 4: Normalized metabolite peak intensity (negative ion mode) in four phage infections and control populations<br>Supplementary Data file 5: List of metabolite peaks (positive ion mode) significantly changed in phage infection relative to control populations at corresponding time points<br>Supplementary Data file 6: List of metabolite peaks (negative ion mode) significantly changed in phage infection relative to control populations at corresponding time points<br>Supplementary Data file 7: The number and percentage of total peaks significantly changed (p ≤ 0.05 and VIP ≥ 1) shared among multiple phage infections<br>Supplementary Data file 8: Source data for venn and upsets plots<br>Supplementary Data file 9: The p value for the pathway enrichment analysis<br>Supplementary Data file 10: List of significantly changed metabolites shared in all or three phage infections
DOI: 10.6084/m9.figshare.4276445.v1
title: PowerPoint Slides for: Simple Cysts in Donor Kidney Contribute to Reduced Allograft Function

description: <b><i>Background:</i></b> Simple renal cysts may be an early marker of renal disease. We investigated whether simple cysts in donor kidney are associated with the decline of allograft function in living donor kidney transplantation. <b><i>Methods:</i></b> We retrospectively reviewed records of donors and recipients from 716 living donor kidney transplants performed between April 2007 and April 2015 in our hospital. Ninety-one donors with renal cysts and 64 recipients with cysts in donor kidney were noted. We compared these 64 cases to 128 no cyst-bearing controls matched for the donor gender, recipient gender, donor baseline serum creatinine (sCr), donor/recipient body surface area ratio, donor age, recipient age and the date of kidney transplantation in turn. <b><i>Results:</i></b> The presence of cysts was interrelated with age, gender and renal function independently in donors. Pathological findings of time-zero biopsy revealed that donor kidney harboring cysts existed more glomerular sclerosis compared with no cyst-bearing controls (p = 0.040). The estimating glomerular filtration rate levels of recipients were 80.82 ± 26.61 vs. 88.21 ± 23.12, 66.95 ± 17.42 vs. 72.15 ± 16.42 and 60.92 ± 22.17 vs. 68.72 ± 14.43 ml/min· 1.73 m<sup>2</sup> in cyst-bearing and no cyst-bearing group on day 7, month 6 and year 5, respectively, after surgery (p &lt; 0.05). The mean sCr were 112.14 ± 48.32 vs. 98.75 ± 29.71 and 126.28 ± 42.32 vs. 115.05 ± 26.35 μmol/l on the 7th day and a half year after transplant, respectively (p &lt; 0.05). The 2 groups did not significantly differ in terms of the other characteristics. <b><i>Conclusion:</i></b> Simple cysts in donor kidney can influence the early and long-term allograft function. In living donor transplantation, kidney presenting cysts should be considered carefully at the time of donor selection.
DOI: 10.17632/967n3v5kn5
title: Three biofilm types produced by a model pseudomonad are differentiated by structural characteristics and fitness advantage Supplementary Information

description: This is the Supplementary Information for our paper 'Three biofilm types produced by a model pseudomonad are differentiated by structural characteristics and fitness advantage', Anna Koza, Robyn Jerdan, Scott Cameron, and Andrew J. Spiers; Microbiology 2020; DOI 10.1099/mic.0.000938. This contains the Supplementary Sections S1 - S6 and Figures S1 - S4.
DOI: 10.17632/tsvdyhbphs
title: PhilMedic: Philippine Medicinal Plant Leaf Dataset

description: Medicinal plants play an important role in human mental and physical well-being. As a result, recognizing and categorizing medicinal herbs is critical to providing quality medicines. This dataset contains forty (40) different species of medicinal plants found in the Philippines with a total of 4922 leaves. This dataset was used in the study "Classifying Philippine Medicinal Plants Based on Their Leaves Using Deep Learning" published on July 13, 2023. Using VGG19 as classifier in the study, it yielded an average accuracy of 92.67%. The images were captured in natural light using a 48-MP Android phone. Each leaf is photographed on both sides (front and back) to ensure that it can be recognized in different poses. Data collection started from September 30, 2022 to December 9, 2022. The following are the 40 classes: Class1-Hibiscus rosa-sinensis(HRS) or Hibiscus; Class2-Psidium guajava(PG) or Guava; Class3-Antidesma bunius(AB) or Salamander tree; Class4-Vitex negundo(VN) or Five-leaved chaste tree; Class5-Moringa oleifera(MO) or Horseradish tree; Class6-Blumea balsamifera(BB) or Ngai camphor; Class7-Origanum vulgare(OV) or Wild marjoram; Class8-Pepromia pellucida(PP) or Silver bush; Class9-Centella asiatica(CA) or Indian hydocotyle; Class10-Coleus scutellarioides(CS) or Painted Nettle; Class11-Phyllanthus niruri(PN) or Stone-breaker; Class12-Corchorus olitorius(CO) or Jute leaves; Class13-Momordica charantia (MC) or Bitter gourd; Class14-Euphorbia hirta(EH) or Asthma plant; Class15-Curcuma longa(CL) or Turmeric; Class16-Carmona retusa(CR) or Philippine Tea; Class17-Senna alata(SA) or Ringworm bush; Class18-Mentha cordifolia Opiz(MCO) or Spearmint; Class19-Capsicum frutescens(CF) or Chili pepper; Class20-Jatropha curcas(JC) or Physic Nut; Class21-Ocimum basilicum(OB) or Sweet basil; Class22-Nerium oleander(NO) or Oleander; Class23-Pandanus amaryllifolius(PA) or Vanilla grass; Class24-Aloe barbadensis Miller(ABM) or Aloe vera; Class25-Lagerstroemia speciosa(LS) or Crape Myrtle; Class26-Averrhoea bilimbi(AVB) or Cucumber tree; Class27-Annona muricata(AM) or Soursop; Class28-Citrus aurantiifolia(CIA) or Lime Tree; Class29-Premna odorata(PO) or Fragrant Premna; Class30-Gliricidia sepium(GS) or Mexican lilac; Class31-Citrus sinensis(CIS) or Sweet Orange; Class32-Mangifera indica(MI) or Mango; Class33-Citrus microcarpa(CM) or Philippine lime; Class34-Impatiens balsamina(IB) or Garden balsam; Class35-Arachis hypogaea(AH) or Peanut; Class36-Tamarindus indica(TI) or Tamarind; Class37-Leucaena leucocephala(LL) or River Tamarind; Class38-Ipomoea batatas(IPB) or Sweet potato; Class39-Manihot esculenta(ME) or Cassava; Class40-Citrus maxima(CMA) or Grapefruit.
DOI: 10.17632/z789nc69gn
title: Incidencia del síndrome post cuidado intensivo y su impacto en la calidad de vida del cuidador familiar

description: Base de datos del estudio PIC F
DOI: 10.6084/m9.figshare.28920818.v1
title: Landmarks and bullets in skull tomographies

description: Tomographies of the x-ray scanned hornbill skulls, with bullets highlighted