cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jwtuxj
title: Occurrence Download

description: A dataset containing 3723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera pallida",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3723 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042994-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txdr2x
title: Occurrence Download

description: A dataset containing 1835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.1019155951984",
 "DecimalLongitude is less than 6.10497514838279",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1835 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042995-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/395xhy
title: Inventaire des coléoptères saproxyliques de France métropolitaine - Données multi sources collectées par Hanot Christophe, pour l'atlas des Cerambycidae de métropole (lot 2017)

description: Compilations de différents jeux de données transmises par des entomologistes, saisies d'articles, saisie de collections.
DOI: 10.6073/pasta/b6a154d54a600d673cdeb3d66b39c76a
title: Lake Tahoe Historic Secchi depth

description: Historic Secchi depth (Water clarity) measurement of Lake Tahoe, CA/NV. There are two sampling stations Index (LTP, 39.0972 -120.155) and Mid-lake (MLTP, 39.1417 -120.0153
 ). Observation at Index station started on 1967-07-28, and averaged sampling interval is around 14 days. Mid-lake station sampling has been started on 1980-04-29, and taken at approximately 33 days interval.
 
 See methods for details.
DOI: 10.15468/dl.677axs
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthagrion rubrifrons",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042996-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h42vef
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.1688 23.99913, -109.0188 23.99913, -109.0188 24.14913, -109.1688 24.14913, -109.1688 23.99913))"
 ]
}

 The dataset includes 190 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042997-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/sviopq
title: Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Caille des blés 2008 - 2012 Coordonnées GPS Lambert 93

description: Aire de reproduction de l'espèce Caille des blés fondée sur la présence de mâles chanteurs au printemps (avril – juin), à partir de points d’écoutes répartis le long d’itinéraires échantillons. Environ 5 000 points ont été visités chaque année entre 2008 et 2012
DOI: 10.15468/dl.6f32rb
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dermochelys coriacea"
 ]
}

 The dataset's 5 records were derived from 488 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042981-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18434/mds2-3978
title: Tracking Community Resilience (TraCR) Database
DOI: 10.15468/dl.h4y4n4
title: Occurrence Download

description: A dataset containing 8063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Onobrychis arenaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8063 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042999-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zws8on
title: CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Matthias COLIN

description: Les données issues de l'outil de gestion CardObs et de son application mobile Carnat (hors programme relavant d'un cadre d'acquisition spécifique) regroupent les observations de naturalistes expérimentés. Ces observations concernent la faune, la flore et la fonge tant continentales que marines. L’emprise géographique des saisies couvre la France métropolitaine et l’Outre-mer. Les données peuvent être opportunistes aussi bien que protocolées en fonction des utilisateurs, et peuvent disposer de champs complémentaires propres à chaque jeu de données. L'outil CardObs a été mis en place en 2007 par le Service du Patrimoine Naturel du MNHN. Il est actuellement géré par PatriNat (OFB, MNHN, CNRS, IRD).
DOI: 10.15468/dl.dhsyvz
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.10497514838279",
 "DecimalLongitude is less than 6.10803470156719",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1002 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042998-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30651554
title: Gene expression of chronically occluded tissue sections in terms of transcripts per million.

description: Gene expression of chronically occluded porcine femoral vein tissue sections in terms of transcripts per million. Here, two sections from three separate specimens were processed. Associated cell types based on deconvolution are also included.Histological regions of interest were identified and annotated on H&E stained images. The corresponding tissue areas were dissected and processed for RNA isolation using the RNeasy FFPE kit (QIAGEN Cat#73504) according to the manufacturer instructions. Selected regions were deparaffinized, digested with Proteinase K and crosslinks were reversed before RNA purification. The resulting purified product was subsequently used for RNA sequencing. Strand-specific RNA-seq libraries were prepared using an TruSEQ total RNA-SEQ library protocol (Illumina provided). Library quality and quantity was assessed using an Agilent bio-analyzer and libraries were sequenced using an Illumina NovaSEQ-X2. The data were processed to count tables using the nf-core/rnaseq pipeline. Reads were trimmed using Trim Galore and then mapped to the Sscrofa11.1 genome assembly using STAR. Quantification of gene counts was done using Salmon. FastQC and MultiQC were used for data quality checking. The online version of CYBERSORTx was used for deconvolution. The safeTME matrix was exported from the spatialDecon R package and used as the signature matrix in CYBERSORTx. The raw count table was normalized by library size, scaled by gene length, and log2 transformed to be used as the mixture file in CYBERSORTx. The "Impute Cell Fractions" analysis module was run with the following parameters: Batch correction - disabled, Disable quantile normalization - true, Run mode (relative or absolute) - relative, Permutations - 1. The top 200 highly expressed genes in the RNAseq sample were overlapped with the safeTME signature genes to verify the deconvoluted major cell types.<br>
DOI: 10.6084/m9.figshare.30651554.v1
title: Gene expression of chronically occluded tissue sections in terms of transcripts per million.

description: Gene expression of chronically occluded porcine femoral vein tissue sections in terms of transcripts per million. Here, two sections from three separate specimens were processed. Associated cell types based on deconvolution are also included.Histological regions of interest were identified and annotated on H&E stained images. The corresponding tissue areas were dissected and processed for RNA isolation using the RNeasy FFPE kit (QIAGEN Cat#73504) according to the manufacturer instructions. Selected regions were deparaffinized, digested with Proteinase K and crosslinks were reversed before RNA purification. The resulting purified product was subsequently used for RNA sequencing. Strand-specific RNA-seq libraries were prepared using an TruSEQ total RNA-SEQ library protocol (Illumina provided). Library quality and quantity was assessed using an Agilent bio-analyzer and libraries were sequenced using an Illumina NovaSEQ-X2. The data were processed to count tables using the nf-core/rnaseq pipeline. Reads were trimmed using Trim Galore and then mapped to the Sscrofa11.1 genome assembly using STAR. Quantification of gene counts was done using Salmon. FastQC and MultiQC were used for data quality checking. The online version of CYBERSORTx was used for deconvolution. The safeTME matrix was exported from the spatialDecon R package and used as the signature matrix in CYBERSORTx. The raw count table was normalized by library size, scaled by gene length, and log2 transformed to be used as the mixture file in CYBERSORTx. The "Impute Cell Fractions" analysis module was run with the following parameters: Batch correction - disabled, Disable quantile normalization - true, Run mode (relative or absolute) - relative, Permutations - 1. The top 200 highly expressed genes in the RNAseq sample were overlapped with the safeTME signature genes to verify the deconvoluted major cell types.<br>
DOI: 10.15468/dl.ft6pn8
title: Occurrence Download

description: A dataset containing 178485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-10-24",
 "EventDate is less than or equal to 2025-11-23",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 178485 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042977-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/z9hnhp
title: Suivi de l'expansion du Frelon asiatique (Vespa velutina) : données exclues de l'inventaire Frelon

description: L’objectif de cet inventaire est de rassembler un jeu exhaustif de données concernant Vespa velutina pour suivre la progression de son invasion en France. 
Ce jeu de données contient les observations exclus de l'inventaire de l'espèce. Elles correspondent à des castes (mâles et femelles sexuées ou gynes) ou stades de développement des colonies à très forte mortalité, qui ne permettent pas de prouver que l'espèce est capable de survivre sur le lieu d'observation l'année de l'observation. Les mâles, par exemple, non inféodés à une colonie, peuvent s'éloigner du nid le plus proche de 30 km par jour. Ces données peuvent, par contre, apporter de nombreuses informations sur la biologie de l'espèce. La justification de l'exclusion d'une observation de l'inventaire des colonies, donc la caractérisation de la caste ou du stade de développement d'une colonie, est précisée dans le champ "Justification invalidation inventaire".

Les données de colonies viables, permettant de prouver la capacité de l'espèce à survivre l'année de l'observation sur le lieu de l'observation, sont enregistrées dans le JDD T73_3. Les espèces avec lesquelles il est parfois confondu par les observateurs sont également inventoriées et regroupées dans le JDD T73_1.
Les données sont collectées par divers organismes et par le grand public via un formulaire de signalement (http://frelonasiatique.mnhn.fr/signaler-informations/)
DOI: 10.15468/dl.jnx7nu
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthallagma luteum",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043000-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffru78
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.0188 23.99913, -108.8688 23.99913, -108.8688 24.14913, -109.0188 24.14913, -109.0188 23.99913))"
 ]
}

 The dataset includes 53 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043001-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/0nhpuu
title: Inventaire des coléoptères saproxyliques de France métropolitaine - Données SAPROX - Ecole d'ingénieur de Purpan

description: Données transmises au SPN par Hervé BRUSTEL pour le compte de l'EI Purpan dans le cadre du programme SAPROX
DOI: 10.15468/dl.9pd254
title: Occurrence Download

description: A dataset containing 276375 records in GBIF matching the query:
SELECT
 countrycode,
 taxonkey,
 COUNT(*) total_observations
FROM
 occurrence
WHERE
 occurrence.kingdom = 'Animalia'
 AND occurrence.establishmentmeans.concept &lt;&gt; 'MANAGED'
GROUP BY
 occurrence.taxonkey,
 occurrence.countrycode

 The dataset's 276375 records were derived from 520 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042989-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2q9x9
title: Occurrence Download

description: A dataset containing 1690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.10803470156719",
 "DecimalLongitude is less than 6.11109425475158",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1690 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043003-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/catxgb
title: Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Alouette lulu 2012 - 2016 Coordonnées GPS Lambert 93

description: Aire de reproduction de l'espèce Alouette lulu fondée sur la présence de mâles chanteurs au printemps (avril – juin), à partir de points d’écoutes répartis le long d’itinéraires échantillons. Environ 5 000 points ont été visités chaque année entre 2012 et 2016
DOI: 10.5281/zenodo.17643660
title: Applying a Requirements-Focused Agile Management Approach for Machine Learning-Enabled Systems

description: This Zenodo repository provides the supplementary material for the article “Applying a Requirements-Focused Agile Management Approach for Machine Learning-Enabled Systems”, including the data-collection instruments, thematic-analysis process, questionnaire protocol and responses, and anonymized interview transcripts.
DOI: 10.15468/dl.nsdk3u
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.8688 23.99913, -108.7188 23.99913, -108.7188 24.14913, -108.8688 24.14913, -108.8688 23.99913))"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043004-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjhhkv
title: Occurrence Download

description: A dataset containing 4911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Callinectes sapidus",
 "Year 2023-2025"
 ]
}

 The dataset includes 4911 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043005-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/mjl87o
title: Modelaje de la Distribución geográfica de Pinus pseudostrobus y P. leiophylla

description: The objective of the proposal is to model the geographic distribution of Pinus psedostrobus and P. leiophylla, by predicting the distribution of their suitable habitat from climate variables. Both species are very important on their ecological role as components of the pine-oak and coniferous forest in México. Pinus psedostrobus is one of the most economically important species in the Neovolcanic Axis (named also Trans-Mexican Volcanic Belt) for its good wood quality, relatively fast growth rate and straight stem. P. leiophylla is usually heavily tapped for resin production and its distribution reaches southern USA, making it a subject for bi-national interest due to its potential to colonize USA grassland-forest transition areas under climatic change scenarios. We will use presence/absence data from (a previously screened for errors) Mexican National Forest Inventory and climatic variables estimated by a spline climate model. Presence or absence in the contemporary climate will be predicted from climate variables obtained for each observation from spline climate surfaces available for Mexico and the rest of North America. A climate profile for each species will be constructed by selecting 5 to 8 of the most relevant climatic variables from 36 climatic variables using the Random Forests algorithm in R. Relevant climate variables are selected according to importance values calculated by the statistical software and according to the errors of prediction of the classification tree. The best fitting models will be used to predict the suitability of the climate for the species on maps gridded at 1 km2 , and distribution maps will be constructed with ArcMap. As an extra product, we will predict the distribution of their suitable habitat for the years 2030, 2060 and 2090, using combinations of three General Circulation Models and two emission scenarios (low and elevated emissions). We considered that management plans for both biological conservation and commercial use must consider actions to accommodate the climatic change, such as assisted migration or assisted colonization.Reino: 1
Filo: 1
Clase: 1
Orden: 1
Familia: 1
Género: 1
Subgénero: 1
Especie: 2
DOI: 10.6084/m9.figshare.28722545
title: Supplemental material

description: Supplemental material for <i>"</i><i>SGLT-2 inhibitors attenuate pattern recognition molecules collectin kidney 1 and mannose-binding lectin in kidney and liver in mice with diabetes</i><i>"</i>
DOI: 10.6084/m9.figshare.28722545.v1
title: Supplemental material

description: Supplemental material for <i>"</i><i>SGLT-2 inhibitors attenuate pattern recognition molecules collectin kidney 1 and mannose-binding lectin in kidney and liver in mice with diabetes</i><i>"</i>
DOI: 10.15468/vhdbww
title: SILENE-FAUNE-PACA - PROSERPINE_2017_12_18

description: PROSERPINE / SILENE est un outil public et collectif au service de la prise en compte de la biodiversité. Soutenu par la DREAL et le Conseil Régional, il associe de nombreux partenaires et contributeurs régionaux. Il est développé et administré par les conservatoires (CBNMED ; CBNA ; CEN). Ensemble, ils partagent un cadre commun de référence : charte SILENE et principes de gouvernance.
DOI: 10.15468/dl.99ktyg
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.11109425475158",
 "DecimalLongitude is less than 6.11415380793598",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 906 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043006-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzcjz9
title: Occurrence Download

description: A dataset containing 1997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Alces americanus"
 ]
}

 The dataset includes 1997 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043008-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/v1m7gx
title: CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de BOUNIAS-DELACOUR Anne

description: Les données issues de l'outil de gestion CardObs et de son application mobile Carnat (hors programme relavant d'un cadre d'acquisition spécifique) regroupent les observations de naturalistes expérimentés. Ces observations concernent la faune, la flore et la fonge tant continentales que marines. L’emprise géographique des saisies couvre la France métropolitaine et l’Outre-mer. Les données peuvent être opportunistes aussi bien que protocolées en fonction des utilisateurs, et peuvent disposer de champs complémentaires propres à chaque jeu de données. L'outil CardObs a été mis en place en 2007 par le Service du Patrimoine Naturel du MNHN. Il est actuellement géré par PatriNat (OFB, MNHN, CNRS, IRD).