cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5pjw9nxbw4
title: MRM DW-MRI Noise Paper Imaging Data

description: Imaging data to accompany MRM paper
DOI: 10.17632/p6bzdk696b
title: Data for: Microclimate edge effect in small fragments of temperate forests in the context of climate change
DOI: 10.6084/m9.figshare.6139889.v1
title: Giving-up density data, McMahon et al.

description: Data from McMahon et al. in Ecology. Grasshopper consumption of carbohydrate and protein rich artificial diets
DOI: 10.17632/9hy3npnjnd
title: Mapeamento de perigo potencial associado a rompimentos de barragens sob efeito cascata

description: Estes dados suplementares estão associados à dissertação intitulada "Mapeamento de perigo potencial associados a rompimentos de barragens sob efeito cascata" e o artigo "A simple model of flood peak attenuation". 

O conjunto de dados contido na pasta "Rompimento de barragens em cascata" inclui informações que podem ser facilmente verificadas através dos dados de entrada para algoritmos MATLAB que foram desenvolvidos e disponibilizados para analisar cheias causadas por possíveis rompimentos de barragens sob efeito cascata na Bacia Hidrográfica do Guaíba, localizada no Estado do Rio Grande do Sul, Brasil.

O conjunto de dados contido na pasta "Modelo de atenuação de pico de cheia" engloba uma planilha exemplo para aplicação do modelo, juntamente com um guia técnico detalhado para sua correta aplicação.
DOI: 10.17632/c3sdcp2m5b
title: Task-based dynamic functional connectivity in infants after exposure to regular white noise during natural sleep: An fNIRS study

description: Task-based dynamic functional connectivity in infants after exposure to regular white noise during natural sleep. Raw data of fNIRS（ Some names are abbreviated, for example, 1-2 represents 0.01-0.02 Hz）
DOI: 10.6084/m9.figshare.13042430.v2
title: Hypervigilance to dynamic and static facial expressions in social anxiety: an eye-tracking investigation.

description: Research has shown attentional bias and hypervigilance in individuals with social anxiety (SA) during the observation of emotional facial expressions, particularly with static stimuli such as pictures or schematic faces. Here, we investigated the recognition of dynamic and static facial expressions and eye tracking correlates in volunteers with symptoms of SA and controls. Fifty-six volunteers took part in the study, divided into a control group (CG) with low SA and a group with symptoms of SA (SAG). The stimuli were emotional faces of joy, disgust, anger, and sadness presented in four emotional intensities (25%, 50%, 75%, and 100%) presented statically (pictures) and dynamically (short movies from a neutral expression to the emotional expression). During the emotion recognition task, binocular eye movements were registered, and the number and duration of eye fixations were analyzed. Repeated-measures ANOVAs revealed that the SAG had a higher recognition rate only for low-intensity (25%) sadness. Both groups had a larger number of fixations for static than dynamic stimuli, as well as longer fixations for dynamic than static stimuli. Significant differences between groups were observed with dynamic stimuli, since the SAG presented larger number of fixations and shorter durations than the CG. Thus, our results revealed a negative bias towards sadness and a hypervigilance (more fixations with faster durations) pattern during the evaluation of emotional faces.
DOI: 10.6084/m9.figshare.14892087.v1
title: Data from: Biodiversity effects of food system sustainability actions from farm to fork

description: The data archived here are the raw data required to reproduce all analysis presented in a manuscript published in <i>PNAS</i>.<br><br>Read, Q. D., Hondula, K. L., & Muth, M. K. Biodiversity effects of food system sustainability actions from farm to fork. <i>PNAS</i>.<br><br>This dataset is intended for use with the code archived in the git repository at https://doi.org/10.5281/zenodo.5949590. Please refer to the <b>README.md</b> file in that repository for instructions on how to download the data and reproduce the analysis.<br><br>Note that the dataset is archived as a set of eight .zip archives. The archives all contain one or more directories. You will need to unzip all the archives into the same root directory to reproduce the directory structure described in the included documentation file.<br><br>The data archived here are from a variety of different sources. As much as is practicable, they are presented here in their raw form as they were downloaded, without any processing. All processing steps can be replicated using the code archived in the accompanying code repository.<br><b><br>Manuscript abstract</b><br><br>Diet shifts and food waste reduction have the potential to reduce the land and biodiversity footprint of the food system. In this study, we estimated the amount of land used to produce food consumed in the United States, and the number of species threatened with extinction as a result of that land use. We predicted potential changes to biodiversity threat under scenarios of food waste reduction and shifts to recommended healthy and sustainable diets. Domestically produced beef and dairy, which require vast land areas, and imported fruit, which has an intense impact on biodiversity per unit land, have especially high biodiversity footprints. Adopting the Planetary Health diet or the USDA-recommended vegetarian diet nationwide would reduce the biodiversity footprint of food consumption. However, increases in consumption of foods grown in global biodiversity hotspots both inside and outside the United States, especially fruits and vegetables, would partially offset the reduction. In contrast, the USDA-recommended US-style and Mediterranean-style diets would increase the biodiversity threat due to increased consumption of dairy and farmed fish. Simply halving food waste would benefit global biodiversity over half as much as all Americans simultaneously shifting to a sustainable diet. Combining food waste reduction with adoption of a sustainable diet could reduce the biodiversity footprint of United States food consumption by roughly half. Species facing extinction because of unsustainable food consumption practices could be rescued by reducing agriculture's footprint; diet shifts and food waste reduction can help us get there.<br><br>
DOI: 10.6084/m9.figshare.22638309.v1
title: Response of masticatory muscles to treatment with orthodontic aligners: a preliminary prospective longitudinal study

description: ABSTRACT Introduction: The emergence of orthodontic aligners has provided an aesthetic and comfortable option for orthodontic treatment. However, the encapsulated design of the aligners can influence the masticatory muscles, and might compromise safe treatment. Objective: This preliminary longitudinal study aimed to investigate whether the use of orthodontic aligners affects the biting force and myoelectric activity of the superficial masseter and anterior temporal muscles. Methods: Ten subjects participated in the study and underwent treatment during an 8-month follow-up period. The root mean square (RMS), the median power frequency (MPF) of the surface electromyography (sEMG) signals, and the biting force (kgf) were recorded and normalized relative to the pretreatment condition. The data were analyzed by repeated-measure analysis of variance (ANOVA), with the significance level set at 5%. Results: Both the superficial masseter and the anterior temporal muscles presented an increase in sEMG signal activity during the treatment, with a marked increase in the latter compared to the former (p&lt;0.05). Moreover, a significant decrease in bite force was evidenced (p&lt;0.05). Conclusions: This preliminary study observed that the orthodontic aligners affected the muscle recruitment pattern of masticatory muscles, and reduced biting performance during the 8-month follow-up period.
DOI: 10.6084/m9.figshare.24800232.v2
title: HPMI: A retinal fundus image dataset for identification of high and pathological myopia based on deep learning

description: Myopia is one of the leading causes of visual impairment worldwide and can progress to high or pathological myopia (HM or PM) if proper measures were not taken. Accurate identification of HM and PH plays an important role for their intervention and treatment, which can be implemented leveraging deep learning technology on sufficient annotation image data. However, few efforts have been made to construct public accessible annotation data for this task. In this paper, we constructed a retinal fundus image dataset (called HPMI) to identify the HM and PM. This dataset consists of 4011 fundus images with their corresponding annotations for HM and PM, which were confirmed by multiple ophthalmic examinations (e.g., visual acuity and axial length). To the best of our knowledge, this is the largest fundus image dataset for the classification of HM and PM. Based on the dataset, we further validated the classification potential of three representative deep learning networks (i.e., ResNet50, DenseNet121, and InceptionV3) and analyzed the consistency between prediction results and annotations
DOI: 10.6084/m9.figshare.28770554.v1
title: Supplementary Material for: Factors contributing to the efficacy of fecal microbiota transplantation for diarrhea-dominant functional bowel disorders

description: Introduction: In cases of effective fecal microbiota transplantation (FMT) for irritable bowel syndrome (IBS), donor feces have been observed to be enriched in Bifidobacterium spp., and FMT for functional bowel disease improved psychiatric symptoms. Although intestinal dysbiosis has received attention as one of the pathophysiologies of IBS, the efficacy of FMT for IBS has not yet been established. In this study, we performed a post-hoc analysis of the efficacy of FMT, focusing on metabolites in donor feces.
Methods: FMT was performed in 12 patients, 8 with refractory diarrhea-predominant IBS and 4 with functional diarrhea (FDr), who were refractory to medical therapy. The donors were family members within the second degree of kinship and were different for each transplant. Fecal characteristics were evaluated before and 12 weeks after transplantation using the Bristol stool scale (BS). BS scores of 3–5 at 12 weeks after transplantation were considered indicative of responders, while BS scores of 6 and 7 were indicative of non-responders. Metagenomic and metabolomic analyses of all 12 donor fecal samples were performed to compare the responder and non-responder groups.
Results: Before transplantation, all 12 patients had BS scores of 6–7, but 12 weeks after transplantation, 6 were in the responder group and 6 were in the non-responder group. Metagenomic analysis showed that effective donor feces contained significantly higher levels of Prevotella than ineffective donor feces. Metabolomic analysis showed that effective donor feces contained significantly higher levels of propionate and butyrate and significantly lower lactate levels than ineffective donor feces.
Conclusion: Propionate-, butyrate-, or Prevotella-rich donor feces may contribute to successful FMT in patients with diarrhea-dominant functional gastrointestinal disorders.
DOI: 10.17632/5b3rfrjxvg
title: Regional characteristics of heritage houses, Tibetan houses in the northeastern region of Aba prefecture, Semantic Segmentation Datasets

description: Interpreting regional characteristics of heritage houses based on 3D digital landscape and point cloud deep learning - Take Tibetan houses in the northeastern region of Aba prefecture as an example: Semantic Segmentation Datasets
DOI: 10.17632/5jp698sf2p
title: Seismotectonics at the transition between opposite-dipping slabs (western Alpine region) - DATASET

description: Supporting Information for the article entitled " Seismotectonics at the transition between opposite-dipping slabs (western Alpine region)" written by E. Eva, M.G. Malusà and S. Solarino. Contents of this file: Details on data processing; Distribution of P+S phase picks for the stations used in this study; Data selected for the comparison between LSQR and SVD performances; Vertical errors calculated using HypoDD with SVD; Focal mechanisms computed for this study; Dataset after HypoDD relocation.
DOI: 10.17632/fkjy37wx5m
title: Composition and distribution of long-chain alkyl diols and their indices for cores ECS-1302 and D12 from the East China Sea inner shelf

description: This data present all raw data for the long-chain alkyl diols and their indices for cores ECS-1302 and D12 from the East China Sea inner shelf. 
The detailed pretreatment method, instrumental parameters and qualitative-quantitative analysis are described in Chen et al. (2021).
Chen, L., Li, F., Liu, J., Duan, X., Xu, G., Qin, M., He, X., et al. (2021). Long-chain alkyl diols as indicators of local riverine input, temperature, and upwelling in a shelf south of the Yangtze River Estuary in the East China Sea. Marine Geology, 440, 106573. https://doi.org/10.1016/j.margeo.2021.106573
DOI: 10.17632/mmmjc6rtb3
title: Data to: Titanium isotopic compositions of bulk rocks and mineral separates from the Kos magmatic suite: Insights into fractional crystallization and magma mixing processes

description: We measured the Ti isotopic compositions of mineral separates and bulk rocks from the calc-alkaline Kos volcano-plutonic system, Aegean arc, Greece. Bulk rock Ti isotopic compositions (δ49Ti) increase with differentiation of the magmatic system, from δ49Ti of +0.042 ± 0.033‰ in basalt to +0.654 ± 0.034‰ in rhyolite. We document two different Ti isotope trends produced by (i) fractional crystallization, and (ii) mixing between a basaltic melt and an evolved (rhyolitic) magma. Trend (i) can be explained by a melt-cumulate Ti isotopic fraction factor α of 0.9998 (i.e., the bulk cumulate is on average 0.20‰ lighter than the melt). The mineral separates reveal variable δ49Ti values, with magnetite having the lightest 49Ti/47Ti isotopic composition, biotite being intermediate and neso- and tectosilicates (i.e., olivine, plagioclase and quartz) heaviest. Comparing the TiO2 concentrations of the low-Ti minerals olivine, plagioclase and quartz determined with LA-ICP-MS and isotope dilution shows that the δ49Ti values measured in these minerals reflect their isotopic compositions, and contamination by inclusions is minimal. The difference in δ49Ti between different minerals is smallest in a basalt (Δ49Tiolivine-magnetite = +0.426) and largest in two rhyolites (Δ49Tiquartz-magnetite = +1.083; both ± 0.046‰). Our data agree with theoretical predictions that Fe–Ti oxides have a light δ49Ti signature, and neso/tectosilicate minerals are heavy. Furthermore, the measured difference in δ49Ti between magnetite-olivine, magnetite-plagioclase and magnetite-quartz agree to first order with theoretically predicted inter-mineral Ti isotopic fractionation factors, thus suggesting that the measured inter-mineral Ti isotopic variations are equilibrium in nature.

Further information can be found in the open access publication, which should be cited when using the data: 
Greber, N. D., Pettke, T., Vilela, N., Lanari, P., & Dauphas, N. (2021). Titanium isotopic compositions of bulk rocks and mineral separates from the Kos magmatic suite: Insights into fractional crystallization and magma mixing processes. Chemical Geology, 578, 120303.
DOI: 10.6084/m9.figshare.3371038.v1
title: Sero-prevalence data in humans

description: This data set was described and analyzed by Andriamandimby et al.,2010. A nationwide cross-sectional serological survey was achieved in 2008 and 2009.<br>
DOI: 10.17632/3k7mrzpryf
title: Compost_Teas_Suppress_Verticillium_dahliae_In_Vitro

description: This data is from a factorial experiment examining the effects of 8 compost tea (CT) recipes on growth of Verticillium dahliae, an organism responsible for wilt in potatoes, both via direct and volatile effects.
DOI: 10.6084/m9.figshare.20064098.v1
title: DATA for Artificial Intelligence automates the characterization of reversibly actuating planar-flow-casted NiTi shape memory alloy foil

description: Nickel-Titanium (NiTi) shape memory alloys (SMAs) are smart materials able to recover their original shape under thermal stimulus. Near-net-shape NiTi SMA foils of 2 meters in length and width of 30 mm have been successfully produced by a planar flow casting facility at CSIRO, opening possibilities of wider applications of SMA foils. The study also focuses on establishing a fully automated experimental system for the characterisation of their reversible actuation, significantly improving SMA foils adaptation into real applications. Artificial Intelligence involving Computer Vision and Machine Learning based methods were successfully employed in the development of the automation SMA characterization process. The study finds that an Extreme Gradient Boosting (XGBoost) Regression model based predictive system experimented with over 175,000 video samples could achieve 99% overall prediction accuracy. Generalisation capability of the proposed system makes a significant contribution towards the efficient optimisation of the material design to produce high quality 30 mm SMA foils. This repository is related to this publication. <br> SI-1 Video: Demonstration video file for a 4BENDS shaped SMA foil while analysed through the newly proposed predictive AI system. SI-2 Video: Demonstration video file for a HALF CIRCLE shaped SMA foil while analysed through the newly proposed predictive AI system. SI-3 Video: Demonstration video file for an OMEGA shaped SMA foil while analysed through the newly proposed predictive AI system. SI-4 Video: Demonstration video file for a V shaped SMA foil while analysed through the newly proposed predictive AI system. 4BENDS_all_syncd_targets.txt: training targets for the 4 BENDS shaped SMA foils. 4BENDS_inputs_.txt: training inputs for the 4 BENDS shaped SMA foils. HALFCIRCLE_all_syncd_targets.txt: training targets for the HALF CIRCLE shaped SMA foils. HALFCIRCLE _inputs_.txt: training inputs for the HALF CIRCLE shaped SMA foils. OMEGA_all_syncd_targets.txt: training targets for the OMEGA shaped SMA foils. OMEGA_inputs_.txt: training inputs for the OMEGA shaped SMA foils. V_all_syncd_targets.txt: training targets for the V shaped SMA foils. V_inputs_.txt: training inputs for the V shaped SMA foils.
DOI: 10.17632/2g8hftwm7z
title: Social Network Data

description: We are providing the dataset that are used in our article.
DOI: 10.17632/cbs2nxpwmv
title: Technical efficiency of Public Higher Education Institutes using Data Envelopment Analysis

description: This data set is used to compute the technical efficiency and a reference set of public higher education (P-HEI) institutes using Data Envelopment Analysis. We compute the efficiency in teaching, research, and knowledge dissemination for 40 P-HEI from Mexico using a data set called ExeCUM.
DOI: 10.6084/m9.figshare.25541446.v2
title: Datasets and input for "Adsorption of 5-fluorouracil, an anticancer drug, in faujasite-type zeolites: understanding storage and release with density functional theory calculations​"

description: Sample input files and datasets connected to the study <b>"</b><b>Adsorption of 5-fluorouracil, an anticancer drug, in faujasite-type zeolites: understanding storage and release with density functional theory calculations</b>​<b>"</b> (<i>published in CrystEngComm, https://doi.org/10.1039/D4CE00344F</i>).The following files are included:<b>Sample_inputs.zip:</b> Sample inputs of CP2K calculations<b>Configs_TZVP_results.zip: </b>Low-energy configurations and output files from CP2K calculations using TZVP basis sets<b>Vibrational_calculations.zip: </b>Results of vibrational calculations performed with CP2K<b>5-FU_FAU_AIMD_results.zip</b><b>, </b><b>5-FU_H2O_FAU_AIMD_results.zip</b><b>, </b><b>5-FU_H2O_AIMD_results.zip:</b> AIMD trajectories (in PDB format) and .ener files obtained from CP2K AIMD simulations
DOI: 10.6084/m9.figshare.679765.v1
title: Effect of mouse orthotopic tissue co-engraftment on human BT474 tumor growth.

description: BT474 tumor spheroids expressing H2B-GFP were implanted directly onto the dorsal skin (sc) or with mouse mammary fat pad donor tissue (EO) and monitored by IVM. Tumor growth was measured by fluorescence signal over time. Mice received human estrogen supplement.
DOI: 10.17632/2vfdm42337
title: A Video Dataset of the Hand Gestures of Indian Sign Language Words used in Emergency Situations

description: The dataset includes videos files of the hand gestures of eight words (accident, call, doctor, help, hot, lose, pain, thief) from Indian sign language (ISL), commonly used to communicate during emergency situations. The data is useful for the researchers working on vision based automatic sign language recognition as well as hand gesture recognition. 

 All the words included in the dataset, except the word doctor are dynamic hand gestures. The videos in this dataset were collected by asking the participants to stand comfortably behind a black colored board and present the hand gestures, in front of the board.  A Sony cyber shot DSC-W810 digital camera with 20.1 mega pixel resolution has been used for capturing the videos.  

The videos have been collected from 26 individuals including 12 males and 14 females in the age group of 22 to 26 years. Two sample videos have been captured from each participant in an indoor environment under normal lighting conditions by placing the camera at a fixed distance. The dataset is presented in two folders with the original raw video sequences in one folder, and the cropped and downsampled video sequences in the other folder.
DOI: 10.17632/39wgn3jtxb
title: Collaborative behavior of intruders moving amid grains

description: These files contain an example of the configuration required to run and analyze a numerical simulation of the motion of a set of intruders within a two-dimensional granular system. The simulation is performed using the DEM open source software LIGGGHTS. Specifically, we use version 3.1.0 combined with the DESIgn toolbox (Agnieszka Herman, Geosci. Model Dev., doi:10.5194/gmd-9-1219-2016), which allows us to perform two-dimensional simulations considering cylindrical particles. The data set contains an example case of the initialization of the system, the actual simulation of the motion of the intruders, Octave and Matlab codes for post-processing the results, a code implemented in the DESIgn toolbox to insert basal friction effects in the simulations, and some videos of the actual simulations.
DOI: 10.17632/b5nxzsvd39
title: Transcription-coupled DNA repair underlies variation in persister awakening and the emergence of resistance 

description: Persisters constitute a population of temporarily antibiotic-tolerant variants in an isogenic bacterial population and are considered an important cause of relapsing infections. It is currently unclear how cellular damage inflicted by antibiotic action is reversed upon persister state exit and how this relates to antibiotic resistance development. We demonstrate that persisters, upon fluoroquinolone treatment, accumulate oxidative damage which is repaired through nucleotide excision repair. Detection of the damage occurs via transcription-coupled repair using UvrD-mediated backtracking or Mfd-mediated displacement of the RNA polymerase. This competition results in heterogeneity in persister awakening lags. Most persisters repair the oxidative DNA damage, displaying a mutation rate equal to the untreated population. However, the promutagenic factor Mfd increases the mutation rate in a persister subpopulation. Our data provide in-depth insight in the molecular mechanisms underlying persister survival and pinpoints Mfd as an important molecular factor linking persistence to resistance development.