cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/w4nn6-gpw81
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C107
description: <strong>Tilt Series Date:</strong> 2012-01-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-14-15/3dimage_68967/</p>12jan14_C107_1_pNL_DN_AT3BT10002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-14-15/3dimage_68967/12jan14_C107_1_pNL_DN_AT3BT10002_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12jan14_C107_1_pNL_DN_AT3BT10002.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-14-15/rawdata/12jan14_C107_1_pNL_DN_AT3BT10002.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/64gcx-j1n17
title: COS7 tfx pNL4GFP and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing pNLGFP and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-15</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> VPS4B (E235Q) expression construct provided by W.Sundquist (Utah); pNLGFP construct provided by I. Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-24/rawdata/</p>12mar15_c108_1_Cos7pNLDN_AT1bt10024.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-24/rawdata/12mar15_c108_1_Cos7pNLDN_AT1bt10024.mrc"
        > <i class="download icon"></i> Download </a></p>

        12mar15_c108_1_Cos7pNLDN_AT1bt10024_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-15-24/3dimage_17893/12mar15_c108_1_Cos7pNLDN_AT1bt10024_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.g7cn22
title: Occurrence Download

description: A dataset containing 8355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterorhinus sannio",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8355 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045818-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/4dn6n-46714
title: MEFs (Rho-) Chan Lab

description: Mef cell line (Rho-) Chan Lab
description: <strong>Tilt Series Date:</strong> 2012-05-29</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Murine embryonic fibroblast (MEFs)</p>
<strong>Strain:</strong> Primary cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Mefs from Chan Lab. Contact person in Chan lab was H. Ngo. Cells were grown on grids, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-05-29-16/3dimage_69391/</p>12may29_C135_1_MEFnomitoDNA_AT2BT20007_full.rec,  Reconstruction (Pixel Size 2.0 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-05-29-16/3dimage_69391/12may29_C135_1_MEFnomitoDNA_AT2BT20007_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12may29_C135_1_MEFnomitoDNA_AT2BT20007.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-05-29-16/rawdata/12may29_C135_1_MEFnomitoDNA_AT2BT20007.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.f5cmj8
title: Occurrence Download

description: A dataset containing 602119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix caprea"
 ]
}

 The dataset includes 602119 records from 2557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045757-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt4cuw
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Andreettaea Luer, Muscarella Luer)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Material citation)"
 ]
}

 The dataset includes 548 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003110-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktjdfn
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Singapore, Malaysia, Indonesia)",
 "OccurrenceStatus is Present",
 "TaxonKey is Urogymnus granulatus (Macleay, 1883)",
 "Year 2000-2024"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011816-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hduv4u
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-110.0688 24.74913, -109.9188 24.74913, -109.9188 24.89913, -110.0688 24.89913, -110.0688 24.74913))"
 ]
}

 The dataset includes 172 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043514-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/748a882dd3aebfaffdb00aa37d55beb9
title: MCR LTER: Coral Reef: Island-Wide Lagoon Benthic Water Temperature, ongoing since 2021

description: Beginning in August 2021, a continuous time series of benthic water temperature is measured with bottom-mounted thermistors (SBE 56s) at 49 sites around the lagoons of Moorea. The thermistor array consists of a backbone of 36 thermistors placed on the backreef approximately 200 m shoreward of the reef crest and spaced approximately 1 km apart. In addition, there are three cross-shore transects (one on each of the three sides of the island). Each cross-shore transect consists of five bottom-mounted thermistors spaced at 100 m intervals, starting at the reef crest and ending 400 m inshore. All thermistors are mounted on plates at ~ 1.5 m depth. Temperature measurements are taken every 2 minutes.
DOI: 10.15468/dl.6ygmrw
title: Occurrence Download

description: A dataset containing 1692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.43846644548183",
 "DecimalLongitude is less than 6.44152599866622",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1692 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043515-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ocucid
title: Données STOC-EPS

description: Données pour le programme STOC-EPS, transmises par le CESCO (UMR 7204), à mettre à jour annuellement
DOI: 10.5281/zenodo.17635056
title: Somatic copy number mutations contribute to fitness in transplantation models of spontaneous human breast cancer metastasis

description: This dataset contains processed genomic files generated as part of a cancer genomics study, including single-cell DNA copy number profiles and bulk RNA-seq quantification. For each sample, we provide HMMcopy reads files (per-bin read counts used for copy number inference) and HMMcopy metrics files (per-cell quality and normalization metrics such as coverage, mappability, GC content, and breakpoint scores). In addition, we include kallisto abundance files, which report transcript-level expression estimates (TPM, estimated counts, and effective lengths) for the corresponding RNA-seq libraries. Files are named to include sample identifiers (e.g., SA535) and the DLP sequencing chip identifier (e.g., A98282B).
DOI: 10.5281/zenodo.17635055
title: Somatic copy number mutations contribute to fitness in transplantation models of spontaneous human breast cancer metastasis

description: This dataset contains processed genomic files generated as part of a cancer genomics study, including single-cell DNA copy number profiles and bulk RNA-seq quantification. For each sample, we provide HMMcopy reads files (per-bin read counts used for copy number inference) and HMMcopy metrics files (per-cell quality and normalization metrics such as coverage, mappability, GC content, and breakpoint scores). In addition, we include kallisto abundance files, which report transcript-level expression estimates (TPM, estimated counts, and effective lengths) for the corresponding RNA-seq libraries. Files are named to include sample identifiers (e.g., SA535) and the DLP sequencing chip identifier (e.g., A98282B).
DOI: 10.15468/hrpnub
title: Données de l'atlas des Mammifères sauvages de Midi-Pyrénées (données agrégées à la maille de 10km)

description: Synthèse des données utilisées pour la réalisation des cartographies publiées dans l'atlas des Mammifères sauvages de Midi-Pyrénées. Les données sont agrégées aux mailles de 10km de coté. Seules les données concernant les espèces aquatiques ont été agrégées suivant le zones hydrographiques de la BDcarthage et se trouvent dans un autre jeux de données (atlas_mam_MP_hydro). 



Synthèse des données centralisées pour la réalisation de l'atlas régional des Mammifères sauvages de Midi-Pyrénées. Les données sources proviennent de toutes les associations qui ont participé à la réalisation de cet atlas. Elles sont pour la plupart issues de protocoles spécifiques à chaque espèce ou groupe d'espèces, ou de contacts occasionnels. 

Les date de prise en compte de la présence des espèces varient suivant les ordres, et sont indiquées dans les fichiers de données.



Le nom indiqué en validation est Emmanuelle Jacquot, coordinatrice de l'atlas, mais en réalité, chaque carte maillée a été validée par l'ensemble des experts participants à la réalisation de cet atlas.
DOI: 10.15468/dl.bqvzuq
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.9188 24.74913, -109.7688 24.74913, -109.7688 24.89913, -109.9188 24.89913, -109.9188 24.74913))"
 ]
}

 The dataset includes 192 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043516-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17487639
title: CJP_2025

description: This is a subset of processed single-nucleus RNA sequencing count data from mouse kidney produced as part of the study "Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains captures global and local expression variation" by Rebboah et al. (https://doi.org/10.1101/2025.04.21.649844). The original count data for all samples and genes is available at the IGVF portal: https://data.igvf.org/matrix-files/IGVFFI3941URLH/ and processing is described in https://doi.org/10.1101/2025.04.21.649844.

adata_female.h5ad: nuclei from 4 females (2,000 genes)

adata_male.h5ad nuclei from 4 females (2,000 genes)
DOI: 10.5281/zenodo.17487638
title: CJP_2025

description: This is a subset of processed single-nucleus RNA sequencing count data from mouse kidney produced as part of the study "Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains captures global and local expression variation" by Rebboah et al. (https://doi.org/10.1101/2025.04.21.649844). The original count data for all samples and genes is available at the IGVF portal: https://data.igvf.org/matrix-files/IGVFFI3941URLH/ and processing is described in https://doi.org/10.1101/2025.04.21.649844.

adata_female.h5ad: nuclei from 4 females (2,000 genes)

adata_male.h5ad nuclei from 4 females (2,000 genes)
DOI: 10.15468/my1dtw
title: Danish True Bugs

description: Database of specimens of true bugs belonging to the superfamilies Pentatomoidea, Coreoidea and Pyrrhocoroidea. The specimens are kept in Natural History Museum in Aarhus and Natural History Museum of Denmark (SNM) in Copenhagen - as well as in a few private collections. The major part of the specimens are included in an atlas survey by Søren Tolsgaard in the period 1992-2000.


a private collection, but some are deposited in the Natural History Museum, Aarhus, Denmark. The database includes a few records from other European countries.
DOI: 10.5281/zenodo.17644690
title: Datasets for "Land subsidence amplifies climate-driven compound flooding and inequality across New York City-Long Island"

description: The dataset contains 2 files (1 CSV file and 1 folder).

1) VLM_longIsland.csv: This CSV file contains vertical land motion (VLM) data for New York City and Long Island. The file includes 5 columns:

Column 1: Longitude (degrees)

Column 2: Latitude (degrees)

Column 3: VLM (mm/year)

Column 4: Standard deviation of VLM (mm/year)

Column 5: Acceration (mm/year2)

VLM values are expressed in the North American reference frame (NA).

2) FloodData Folder: This folder contains flood-model outputs at 30-m spatial resolution across New York City and Long Island. It includes 10 flood scenarios, representing:

Historical baseline (2012 Hurricane Sandy event)

Climate change (CC-only): sea-level rise and precipitation forcing

VLM-only: present and projected subsidence uplift patterns

Combined VLM + CC: joint effects of land motion and climate forcing

Each scenario is provided for three time horizons: Present-day (2025), 25-year horizon (2050), and 50-year horizon (2075).

The naming convention is:

LongIslandFlood_baseline — historical baseline (2012 Sandy)

LongIslandFlood_CC_2025, _2050, _2075 — climate change only

LongIslandFlood_VLM_2025, _2050, _2075 — VLM only

LongIslandFlood_VLM_CC_2025, _2050, _2075 — combined VLM + CC

Abstract: Compound flooding from tropical cyclones threatens coastal communities through combined storm surge and extreme rainfall, with these hazards projected to intensify under climate change (CC) due to storm intensification and sea level rise (SLR). However, current assessments rarely account for land subsidence, which locally amplifies relative SLR and alters floodwater pathways, producing nonlinear changes in flood dynamics. Here, we integrate high-resolution satellite-derived vertical land motion (VLM) measurements with hydrodynamic flood model to quantify how subsidence will alter present and future cyclone-driven flooding across New York City and Long Island, NY. We find an average subsidence rate of 1.1 mm/yr, with localized hotspots experiencing cumulative settlements exceeding 0.3 m per decade across the region. Under a Sandy-like tropical cyclone, the combined influence of subsidence and CC increases flood extent by 46% (680.5 Mm3) within 25 years and 81% (843.2 Mm3) within 50 years, exposing an addition– 290,000 people compared to baseline conditions. Relative to SLR alone, subsidence further amplifies the flood extent and depth by 2-6%, highlighting the sensitivity of urban flooding to land surface changes. Additionally, we find that relative SLR increases flood risk for low-income and marginalized communities. These findings demonstrate that excluding subsidence from flood-hazard assessments underestimates risk and obscures emerging social inequities, underscoring the need to integrate land motion into coastal flood mapping, infrastructure design, and equitable adaptation planning.
DOI: 10.5281/zenodo.17644691
title: Datasets for "Land subsidence amplifies climate-driven compound flooding and inequality across New York City-Long Island"

description: The dataset contains 2 files (1 CSV file and 1 folder).

1) VLM_longIsland.csv: This CSV file contains vertical land motion (VLM) data for New York City and Long Island. The file includes 5 columns:

Column 1: Longitude (degrees)

Column 2: Latitude (degrees)

Column 3: VLM (mm/year)

Column 4: Standard deviation of VLM (mm/year)

Column 5: Acceration (mm/year2)

VLM values are expressed in the North American reference frame (NA).

2) FloodData Folder: This folder contains flood-model outputs at 30-m spatial resolution across New York City and Long Island. It includes 10 flood scenarios, representing:

Historical baseline (2012 Hurricane Sandy event)

Climate change (CC-only): sea-level rise and precipitation forcing

VLM-only: present and projected subsidence uplift patterns

Combined VLM + CC: joint effects of land motion and climate forcing

Each scenario is provided for three time horizons: Present-day (2025), 25-year horizon (2050), and 50-year horizon (2075).

The naming convention is:

LongIslandFlood_baseline — historical baseline (2012 Sandy)

LongIslandFlood_CC_2025, _2050, _2075 — climate change only

LongIslandFlood_VLM_2025, _2050, _2075 — VLM only

LongIslandFlood_VLM_CC_2025, _2050, _2075 — combined VLM + CC

Abstract: Compound flooding from tropical cyclones threatens coastal communities through combined storm surge and extreme rainfall, with these hazards projected to intensify under climate change (CC) due to storm intensification and sea level rise (SLR). However, current assessments rarely account for land subsidence, which locally amplifies relative SLR and alters floodwater pathways, producing nonlinear changes in flood dynamics. Here, we integrate high-resolution satellite-derived vertical land motion (VLM) measurements with hydrodynamic flood model to quantify how subsidence will alter present and future cyclone-driven flooding across New York City and Long Island, NY. We find an average subsidence rate of 1.1 mm/yr, with localized hotspots experiencing cumulative settlements exceeding 0.3 m per decade across the region. Under a Sandy-like tropical cyclone, the combined influence of subsidence and CC increases flood extent by 46% (680.5 Mm3) within 25 years and 81% (843.2 Mm3) within 50 years, exposing an addition– 290,000 people compared to baseline conditions. Relative to SLR alone, subsidence further amplifies the flood extent and depth by 2-6%, highlighting the sensitivity of urban flooding to land surface changes. Additionally, we find that relative SLR increases flood risk for low-income and marginalized communities. These findings demonstrate that excluding subsidence from flood-hazard assessments underestimates risk and obscures emerging social inequities, underscoring the need to integrate land motion into coastal flood mapping, infrastructure design, and equitable adaptation planning.
DOI: 10.15468/dl.9tkjuq
title: Occurrence Download

description: A dataset containing 1550687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1550687 records from 5027 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043487-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12034513
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.25549/inscriptifact-ouc110823670
title: Persepolis Fortification Elamite Tablet 2280.101, Fort 2280.101

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2280.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge, reverse, upper edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110823454
title: Persepolis Fortification Elamite Tablet 2280.101, Fort 2280.101

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2280.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge, reverse, upper edge. ❧ [Physical Object Note:] Left side of tablet missing.