cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/yfp5sfj47m.2
title: CRC-HGD-v1: A Histopathological Image Dataset for Grading Colorectal Cancer

description: CRC-HGD-v1 is the first version of Colorectal Cancer Histopathological Grading Image Dataset. This dataset includes 1,899 images in 3 categories: 1- Grade I (Well Differentiated), 2- Grade II (Moderately Differentiated), and 3- Grade III (Poorly Differentiated). 
The first main three category (Grade I, II, and III) consists of images in four magnification level: 4x, 10x, 20x, and 40x. Almost for all of the specimens, there is one image in 4x, three images in 10x, three images in 20x, and three images in 40x, which make it 10 images per specimen. Overall, there is 103 samples for Grade I, 75 samples for Grade II, and 32 samples for Grade III. Considering all images related to four magnifications, there is 860 images in Grade I, 712 in Grade II, and 327 in Grade III.

These samples are gathered and prepared by a team of medical experts in pathology, surgery, gastroenterology, artificial intelligence (AI), and data science under supervision of PoursinaHakim Digestive Disease Research Center (PDDRC).

For query on the latest update and more information about this dataset, you can refer to: https://databiox.com
DOI: 10.6084/m9.figshare.c.3857032_d2.v1
title: Additional file 2: of Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis)

description: Gene Ontology. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3857032_d3.v1
title: Additional file 3: of Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis)

description: Interaction of microsporidia and EMB within k-means clustering. (XLSX 95Â kb)
DOI: 10.6084/m9.figshare.c.3857032_d4.v1
title: Additional file 4: of Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis)

description: Consensus transcripts within Cluster B across L. salmonis studies. (XLSX 107Â kb)
DOI: 10.17632/43mdjcsrm6.1
title: The immune microenvironment of multifocal primary tumors and peritumoral tissuesin MMTV-PyMT transgenic mice was characterized by mass cytometry

description: Mass cytometry data from MMTV-PyMT transgenic mice. FCS files are normalized to remove batch effect and subsequently gated for CD45+ cells.
DOI: 10.17632/9jrjswxtbf
title: High elongation strain sensor data used in Sensors manuscript

description: Contains example data for sensor strain, stress and resistance for sensors cycled at different rates, along with a couple of example plotting and curve fit scripts.
DOI: 10.17632/9jrjswxtbf.1
title: High elongation strain sensor data used in Sensors manuscript

description: Contains example data for sensor strain, stress and resistance for sensors cycled at different rates, along with a couple of example plotting and curve fit scripts.
DOI: 10.17632/hgkdscww3n.1
title: Data for overburden layer thickness prediction

description: There are some data about the overburden layer thickness samples and conditioning factors in Huangtan Town.
DOI: 10.17632/m9d5dhj7fy.1
title: Huang et.al, raw data Dec 18th, 2024

description: This is the raw data for the manuscript titled with “Development of a solidification-free gelatin hydrogel ink for high-resolution printing and improved osteogenic differentiation of mesenchymal stem cells”
DOI: 10.6084/m9.figshare.c.3857923_d1
title: Additional file 10: Table S9. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Metabolic network modeling results. (XLS 217Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d1.v1
title: Additional file 10: Table S9. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Metabolic network modeling results. (XLS 217Â kb)
DOI: 10.5281/zenodo.14224616
title: Split-beam echosounder data from keel-mounted EK60 during PolarFront 2024-01 cruise

description: PolarFront 2024-01 ship EK60

The dataset contains 32 .raw echosunder files with their auxillaty files (.bot,.idx), recorded in the period 2024-01-03 to 2024-01-13

See the Cruise Report (Daase 2024) for details.

Daase, M. (2024). PolarFront January 2024 Cruise Report. Zenodo. https://doi.org/10.5281/zenodo.10623810
DOI: 10.5281/zenodo.14224617
title: Split-beam echosounder data from keel-mounted EK60 during PolarFront 2024-01 cruise

description: PolarFront 2024-01 ship EK60

The dataset contains 32 .raw echosunder files with their auxillaty files (.bot,.idx), recorded in the period 2024-01-03 to 2024-01-13

See the Cruise Report (Daase 2024) for details.

Daase, M. (2024). PolarFront January 2024 Cruise Report. Zenodo. https://doi.org/10.5281/zenodo.10623810
DOI: 10.6084/m9.figshare.c.3857923_d2.v1
title: Additional file 11: Table S10. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: MS/MS spectral information for significantly altered metabolites irradiated mice. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d2
title: Additional file 11: Table S10. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: MS/MS spectral information for significantly altered metabolites irradiated mice. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d3.v1
title: Additional file 1: Table 1. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Diversity analysis of 16S rRNA sequencing samples. Alpha and beta diversity groups comparison statistics. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3857905_d3.v1
title: Additional file 3: of Who and where are the uncounted children? Inequalities in birth certificate coverage among children under five years in 94 countries using nationally representative household surveys

description: Birth Registration Status of Children Under Age Five in 94 countries: country level estimates, sample size, and data sources. (XLSX 27Â kb)
DOI: 10.5287/ora-9o5jz6jab
title: Dataset for Cytomegalovirus infection is a risk factor for TB disease but not TB infection

description: Raw data from 2 cohorts - a Ugandan cohort of TB patients and matched controls, and a Gambian paediatric population of high TB exposure with and without TB infection
DOI: 10.6084/m9.figshare.c.3857923_d7
title: Additional file 5: Table S4. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: ANODEV and model-based clustering results for 16S rRNA data at the phylotype level. (XLS 836Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d8.v1
title: Additional file 6: Table S5. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Constrained analysis of principal coordinates (db-RDA method) for 16S rRNA counts at the phylotype level. (XLS 671Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d8
title: Additional file 6: Table S5. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Constrained analysis of principal coordinates (db-RDA method) for 16S rRNA counts at the phylotype level. (XLS 671Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d10.v1
title: Additional file 8: Table S7. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Multivariate regression and clustering of LC-MS data. (XLS 5048Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d11.v1
title: Additional file 9: Table S8. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Constrained analysis of principal coordinates (db-RDA method) for LC/MS data. Enrichment analysis of HMDB metabolite classes. (XLS 5550Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d9.v1
title: Additional file 7: Table S6. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Statistical significance of microbiome functional shifts (FishTaco algorithm). (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d10
title: Additional file 8: Table S7. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Multivariate regression and clustering of LC-MS data. (XLS 5048Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d9
title: Additional file 7: Table S6. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Statistical significance of microbiome functional shifts (FishTaco algorithm). (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3857923_d11
title: Additional file 9: Table S8. of Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

description: Constrained analysis of principal coordinates (db-RDA method) for LC/MS data. Enrichment analysis of HMDB metabolite classes. (XLS 5550Â kb)
DOI: 10.15468/dl.h7m9u8
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenopsis ocellata Poey, 1865",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 69 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039300-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6092/unibo/amsacta/8079
title: INTELLIMAN. WP5 T5-1-1. Monocular Estimation of Connector Orientation: Combining Deformable Linear Object Priors and Smooth Angle Classification

description: The dataset contains data related to the development of a learning-based solution for the detection of manufacturing errors in the context of robotic wiring harness assembly. In particular, the dataset contains the training set, the validation set, and the test set used to develop the proposed neural networks-based error detector, and the scripts to train and test the neural networks and store the trained models. The data were produced in the framework of Horizon Europe INTELLIMAN project and are presented in the publication: 
A. Caporali, K. Galassi, G. Berselli and G. Palli, "Monocular Estimation of Connector Orientation: Combining Deformable Linear Object Priors and Smooth Angle Classification," 2024 IEEE International Conference on Advanced Intelligent Mechatronics (AIM), Boston, MA, USA, 2024, pp. 799-804, doi: 10.1109/AIM55361.2024.10637081.
DOI: 10.6084/m9.figshare.c.3857998_d1.v1
title: Additional file 1: Table S1. of Comprehensive proteome profiling in Aedes albopictus to decipher Wolbachia-arbovirus interference phenomenon

description: List of spots and fold change with sequences of peptides. (XLSX 7247Â kb)
DOI: 10.6084/m9.figshare.c.3857992_d1
title: Additional file 1: of Survey of practitionersâ   competency for diagnosis of acute diseases manifest on chest X-ray

description: Raw data of the survey (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3857992_d1.v1
title: Additional file 1: of Survey of practitionersâ   competency for diagnosis of acute diseases manifest on chest X-ray

description: Raw data of the survey (XLSX 18Â kb)
DOI: 10.15468/dl.6dgesw
title: Occurrence Download

description: A dataset containing 22728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Acris blanchardi Harper, 1947)"
 ]
}

 The dataset includes 22728 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039301-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3858004_d3.v1
title: Additional file 3: of Examining database persistence of ISO/EN 13606 standardized electronic health record extracts: relational vs. NoSQL approaches

description: XQuery program. Program written in XQuery performing the six queries on the eXist database. (XQUERY 5.51 kb)
DOI: 10.6084/m9.figshare.c.3858004_d3
title: Additional file 3: of Examining database persistence of ISO/EN 13606 standardized electronic health record extracts: relational vs. NoSQL approaches

description: XQuery program. Program written in XQuery performing the six queries on the eXist database. (XQUERY 5.51 kb)
DOI: 10.6084/m9.figshare.c.3858007_d4.v1
title: Additional file 4: of Methods for medical device and equipment procurement and prioritization within low- and middle-income countries: findings of a systematic literature review

description: Appendix 4: Data extraction sheet. (XLSX 85Â kb)
DOI: 10.6084/m9.figshare.c.3858007_d4
title: Additional file 4: of Methods for medical device and equipment procurement and prioritization within low- and middle-income countries: findings of a systematic literature review

description: Appendix 4: Data extraction sheet. (XLSX 85Â kb)
DOI: 10.6084/m9.figshare.c.3859273_d1.v1
title: Additional file 1: Table S1. of Disseminated intravascular coagulation with increased fibrinolysis during the early phase of isolated traumatic brain injury

description: (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3859273_d1
title: Additional file 1: Table S1. of Disseminated intravascular coagulation with increased fibrinolysis during the early phase of isolated traumatic brain injury

description: (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3859300_d4.v1
title: Additional file 4: of Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

description: Predicted Membrane Proteins. (XLSX 206 kb)
DOI: 10.6084/m9.figshare.c.3859300_d5.v1
title: Additional file 5: of Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

description: Predicted Transporter Proteins. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3859300_d4
title: Additional file 4: of Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

description: Predicted Membrane Proteins. (XLSX 206 kb)
DOI: 10.6084/m9.figshare.c.3859300_d5
title: Additional file 5: of Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

description: Predicted Transporter Proteins. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3860329_d1.v1
title: Additional file 1: Table S1. of Genetic diversity and differentiation patterns in Micromeria from the Canary Islands are congruent with multiple colonization dynamics and the establishment of species syngameons

description: List of all localities with information regarding the number of individuals sampled, species classification according to Puppo and Meimberg [26, 27], and coordinates. Table S2. Summary statistic of the STRUCTURE analyses performed. This includes the K values tested and which ones were the best. It also includes the mean LnProb and similarity score of the 15 replicates obtained with CLUMPAK. Lastly we also include the results of the power analysis done with POWSIM, presented as percentage of runs that contradicted the null hypothesis of homogeneity of the data. Table S3. Migration rates calculated with BayesAss. Values correspond to percentage of individuals from the species (3.1) or island (3.2) in the upper line originated from species (3.1) or island (3.2) in the left column. The second value corresponds to the 95% confidence interval. Migration rates significantly higher than zero are marked in bold. Table S4. Migration rate calculated with Migrate. Values correspond to average number of individuals migrating per generation. Source species or islands are in the left column and sink species or islands in the upper line. Values with 95% intervals above zero (under brackets) are marked as bold. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3860329_d1
title: Additional file 1: Table S1. of Genetic diversity and differentiation patterns in Micromeria from the Canary Islands are congruent with multiple colonization dynamics and the establishment of species syngameons

description: List of all localities with information regarding the number of individuals sampled, species classification according to Puppo and Meimberg [26, 27], and coordinates. Table S2. Summary statistic of the STRUCTURE analyses performed. This includes the K values tested and which ones were the best. It also includes the mean LnProb and similarity score of the 15 replicates obtained with CLUMPAK. Lastly we also include the results of the power analysis done with POWSIM, presented as percentage of runs that contradicted the null hypothesis of homogeneity of the data. Table S3. Migration rates calculated with BayesAss. Values correspond to percentage of individuals from the species (3.1) or island (3.2) in the upper line originated from species (3.1) or island (3.2) in the left column. The second value corresponds to the 95% confidence interval. Migration rates significantly higher than zero are marked in bold. Table S4. Migration rate calculated with Migrate. Values correspond to average number of individuals migrating per generation. Source species or islands are in the left column and sink species or islands in the upper line. Values with 95% intervals above zero (under brackets) are marked as bold. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3860341_d1.v1
title: Additional file 1: Table S1. of Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

description: Metadata and accession numbers of the 69 E. coli strains used for phylogenetic analysis. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3860347_d2.v1
title: MOESM2 of Effects of background statin therapy on glycemic response and cardiovascular events following initiation of insulin therapy in type 2 diabetes: a large UK cohort study

description: Additional file 2. Events and hazard ratios of CV events between non-statin vs non-statin users and statin type.
DOI: 10.6084/m9.figshare.c.3860347_d2
title: MOESM2 of Effects of background statin therapy on glycemic response and cardiovascular events following initiation of insulin therapy in type 2 diabetes: a large UK cohort study

description: Additional file 2. Events and hazard ratios of CV events between non-statin vs non-statin users and statin type.
DOI: 10.15468/dl.36ppv8
title: Occurrence Download

description: A dataset containing 4546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetodipterus faber (Broussonet, 1782)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4546 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039302-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3860359_d1.v1
title: Additional file 1: of Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers

description: Table of number of breakdowns recorded for each NI spoligotype, 2003â  2010 (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3860359_d1
title: Additional file 1: of Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers

description: Table of number of breakdowns recorded for each NI spoligotype, 2003â  2010 (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3860365_d1.v1
title: Additional file 1: of Assessment of the prognostic role of a 94-single nucleotide polymorphisms risk score in early breast cancer in the SIGNAL/PHARE prospective cohort: no correlation with clinico-pathological characteristics and outcomes

description: Table S1. List of 94 variants associated with risk, involved in the 94-SNP risk score (identification and characteristics of variants). (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3860359_d2.v1
title: Additional file 2: of Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers

description: Table of number of breakdowns recorded for each NI MVLA-type, 2003â  2010 (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3860365_d1
title: Additional file 1: of Assessment of the prognostic role of a 94-single nucleotide polymorphisms risk score in early breast cancer in the SIGNAL/PHARE prospective cohort: no correlation with clinico-pathological characteristics and outcomes

description: Table S1. List of 94 variants associated with risk, involved in the 94-SNP risk score (identification and characteristics of variants). (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3860359_d2
title: Additional file 2: of Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers

description: Table of number of breakdowns recorded for each NI MVLA-type, 2003â  2010 (XLS 65Â kb)
DOI: 10.15468/dl.v3mkuq
title: Occurrence Download

description: A dataset listing the 197452 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 197452 records were derived from 3936 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039287-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1147818.10fu
title: SH1147818.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1147819.10fu
title: SH1147819.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.