cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48432/fbjuqa
title: Descritores físico-químicos e estruturais das proteínas contendo sítios alostéricos.

description: O banco de dados de sítios alostéricos foi construído a partir lista de arquivos descarregada do site da base de dados ASD (AlloSteric Database), disponível em https://mdl.shsmu.edu.cn/ASD/, contendo informações sobre as proteínas com sítios alostéricos. Usando essa lista, buscamos no PDB as proteínas cujas estruturas têm resolução melhor que 2.5 Å. Essa filtragem resultou em 7684 estruturas, e para cada uma delas foram calculados os descritores físico-químicos e estruturais da plataforma STING, distribuídos em 108 tabelas do banco de dados relacional. O objetivo desse conjunto de dados é identificar, baseado nesses descritores, os resíduos de aminoácidos pertencentes ao sítio alostérico dessas proteínas. Essa informação é importante, uma vez que a alosteria é pertinente para regular a atividade funcional de uma proteína induzida pela ação de um efetor em um sítio distinto do sítio ativo de biomoléculas através de alteração de conformação e/ou dinâmica. Os dados estão disponibilizados no formato CSV. O usuário pode trabalhar com um conjunto de dados separado, ou pode unir os arquivos. Não há uma sequência lógica para ele fazer isso, pode seguir a ordem alfabética, se quiser.
DOI: 10.6084/m9.figshare.24517165
title: C.elegans neuropeptide connectome neuropeptide grouped networks

description: The neuropeptide connectome of C.elegans networks grouped by the neuropeptide used by the neuropeptide-receptor pairs to connect the neurons. 49 neuropeptides used, identities described in Ligand-receptor interaction table.
DOI: 10.6084/m9.figshare.24517165.v1
title: C.elegans neuropeptide connectome neuropeptide grouped networks

description: The neuropeptide connectome of C.elegans networks grouped by the neuropeptide used by the neuropeptide-receptor pairs to connect the neurons. 49 neuropeptides used, identities described in Ligand-receptor interaction table.
DOI: 10.6084/m9.figshare.24517171
title: Cyprus-December_2017.xlsx

description: <i>Solomos, S.; Spyrou, C.; Barreto, A.; Rodríguez, S.; González, Y.; Neophytou, M.K.A.; Mouzourides, P.; Bartsotas, N.S.; Kalogeri, C.; Nickovic, S.; et al. The Development of METAL-WRF Regional Model for the Description of Dust Mineralogy in the Atmosphere. Atmosphere 2023, 14, 1615. </i><i>https://doi.org/10.3390/</i><i> atmos14111615</i>
DOI: 10.6084/m9.figshare.24517171.v1
title: Cyprus-December_2017.xlsx

description: <i>Solomos, S.; Spyrou, C.; Barreto, A.; Rodríguez, S.; González, Y.; Neophytou, M.K.A.; Mouzourides, P.; Bartsotas, N.S.; Kalogeri, C.; Nickovic, S.; et al. The Development of METAL-WRF Regional Model for the Description of Dust Mineralogy in the Atmosphere. Atmosphere 2023, 14, 1615. </i><i>https://doi.org/10.3390/</i><i> atmos14111615</i>
DOI: 10.6084/m9.figshare.24517180
title: C.elegans neuropeptide connectome ligand-receptor interactions used EC50 500nM cutoff

description: Interactions between neuropeptide ligand and GPCR receptors to build the neuropeptide connectome of C.elegans. Threshold set at EC50 500nM. Original dataset https://doi.org/10.1016/j.celrep.2023.113058
DOI: 10.5281/zenodo.10078200
title: Data set for analyzing scaling and criticality in large-scale social systems regulated by global factors

description: Research information:

Title: Scaling and criticality in large-scale social systems regulated by global factors
Abstract: How do individuals in large-scale social systems behave in response to global factors and what kinds of macroscopic dynamics will emerge as consequences? Here we conduct a naturalistic observation of the daily consumer behaviours of 190,000 individuals from January 2018 to December 2022, extracting the long-term consumption dynamics of about 6000 types of commodities from approximately 2.2 million purchase orders. The consumption dynamics is subdivided into trend, seasonal, and random components, whose dynamic processes across scales are analyzed by a renormalization group. we discover that the coronavirus pandemic, an exogenetic factor acting on the social system, regulates the scaling and criticality of consumption dynamics. On a large time scale, the long-term dynamics of the system, regardless of arising from trend, seasonal, or random individual behaviours, is pushed towards a boundary between independent and correlated phases as the pandemic erupts. On a smaller time scale, short-term consumption dynamics exhibits more diversities in response to the pandemic. While the trend and random behaviours of individuals are driven to quasi-criticality and exhibit scale-invariance as the pandemic breaks out, seasonal behaviours are more robust against regulations. Overall, our study provides insights into the regulation mechanisms of global factors on the dynamics of large-scale and heterogeneous social systems.
Data set description:

RawData: A csv file for approximately 2.2 million times purchase orders made by around 190,000 individuals before, during, and after the outbreak of coronavirus disease 2019 (COVID-19). 
ConsumptionDynamics: A csv file that describes the daily evolution of the consumption frequencies for approximately 6,000 types of commodities. Each row denotes an extracted time series that measures the number of times a commodity is purchased each day. Each column denotes a single day.
Note that the names of commodities in current data set are writen in Chinese.
DOI: 10.34740/kaggle/dsv/6908987
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.6084/m9.figshare.24517108.v1
title: Source data for parallel local adaptation to climate driven by introgression in oak species

description: Three source data for the article "List of candidate SNPs potentially under selection identified by PCAdapt, LFMM and RDA in <i>Q. acutissima</i> and <i>Q. variabilis</i>", including the list of candidate SNPs potentially under selection identified by PCAdapt, LFMM and RDA in <i>Q. acutissima</i> and <i>Q. variabilis</i> (Source table 1), the structure variants and its relative genetic divergence (<i>F</i><sub>ST</sub>) between the East and West groups in Q. variabilis and <i>Q. acutissima</i> at Chromosome 5 (Source table 2) and the overview of 1128 SNPs with a reference allele frequency difference between haplotype group Qv-E and haplotype group Qv-W larger than 0.8, as shown in Fig. S17 (Source table 3).
DOI: 10.6084/m9.figshare.24517108
title: Source data for parallel local adaptation to climate driven by introgression in oak species

description: Three source data for the article "List of candidate SNPs potentially under selection identified by PCAdapt, LFMM and RDA in <i>Q. acutissima</i> and <i>Q. variabilis</i>", including the list of candidate SNPs potentially under selection identified by PCAdapt, LFMM and RDA in <i>Q. acutissima</i> and <i>Q. variabilis</i> (Source table 1), the structure variants and its relative genetic divergence (<i>F</i><sub>ST</sub>) between the East and West groups in Q. variabilis and <i>Q. acutissima</i> at Chromosome 5 (Source table 2) and the overview of 1128 SNPs with a reference allele frequency difference between haplotype group Qv-E and haplotype group Qv-W larger than 0.8, as shown in Fig. S17 (Source table 3).
DOI: 10.6084/m9.figshare.24517204
title: Solomos et al., Atmosphere, 2023 dataset

description: Dataset corresponding to <i>Solomos, S.; Spyrou, C.; Barreto, A.; Rodríguez, S.; González, Y.; Neophytou, M.K.A.; Mouzourides, P.; Bartsotas, N.S.; Kalogeri, C.; Nickovic, S.; et al. The Development of METAL-WRF Regional Model for the Description of Dust Mineralogy in the Atmosphere. Atmosphere 2023, 14, 1615. </i><i>https://doi.org/10.3390/</i><i> atmos14111615</i>
DOI: 10.6084/m9.figshare.24516970
title: Test datasets 2

description: Coconut test2
DOI: 10.6084/m9.figshare.24516970.v1
title: Test datasets 2

description: Coconut test2
DOI: 10.6084/m9.figshare.24516961
title: Test datasets

description: hello world
DOI: 10.6084/m9.figshare.24516961.v1
title: Test datasets

description: hello world
DOI: 10.6084/m9.figshare.24517243
title: Supplementary Material for: Clinical effects of oral supplementation of gamma-ciclodextrin curcumin complex in male patients with moderate-to-severe BPH-related Lower Urinary Tract Symptoms

description: Introduction: Benign prostatic hyperplasia (BPH) is the most common cause of lower urinary tract symptoms (LUTS) in males. Curcumin exhibits anti-inflammatory and anti-tumor properties which may be effective for BPH. This multi-arm observational study evaluated the real-world efficacy of QURMIN® (Gamma-cyclodextrin-curcumin Complex-CAVACURMIN®) as single or combination therapy for BPH. Methods: Men with moderate-severe LUTS/BPH receiving a 6-month supplementation with QURMIN® alone or in combination with BPH-specific medication were propensity score matched with patients not taking curcumin and then divided into subgroups based on concomitant baseline treatment. Cohorts were compared in the 6-month variation of IPSS, quality of life (IPSS-QoL), Benign prostatic Hyperplasia Impact Index (BII) and uroflowmetry parameters. Curcumin tolerability was evaluated in terms of discontinuations and adverse effects. Results: The 1:1 propensity score matching resulted in a treatment-naïve (n=152), an alpha-blocker only(AB)(n=138) and a AB+5-alpha reductase inhibitors (5-ARI) (n=78) subgroup. After 6 months, drug-naïve patients taking curcumin reported significant improvement in IPSS-storage (-3.9,p&lt;0.001), IPSS-voiding(-2.0,p=0.011), IPSS-total(-5.9,p&lt;0.001), IPSS-QoL(-3.9,p&lt;0.001), BII(-2.0,p&lt;0.001), Qmax(+3.1 ml/s,p&lt;0.001), Qmean(+1.9 ml/s,p=0.005), PVR(-7.7 ml,p&lt;0.001), and PSA(-0.3 ng/ml,p=0.003), compared to controls. Patients taking ABs and curcumin showed improvement in IPSS-storage(-2.7,p&lt;0.001), IPSS-voiding(-1.3,p=0.033), IPSS-total(-3.5,p&lt;0.001), IPSS-QoL(-1.1,p=0.004), BII(-1.7,p=0.006), Qmax(+1.0 ml/s,p=0.006) and PSA(-0.2 ng/ml,p=0.01). Patients taking curcumin and AB+5-ARI showed improvement in IPSS-storage(-1.3,p=0.007), IPSS-total(-1.6,p=0.034), IPSS-QoL(-1.1,p&lt;0.001) and BII(-2.0,p&lt;0.001). No adverse reactions were reported for curcumin supplementation. Conclusion: QURMIN® (CAVACURMIN®) led to significant improvements in symptom burden, uroflow parameters and QoL, without significant additional side effects, thus proving to be a potential new treatment for BPH, either as a single therapy or in addition to standard treatment.
DOI: 10.6084/m9.figshare.24517243.v1
title: Supplementary Material for: Clinical effects of oral supplementation of gamma-ciclodextrin curcumin complex in male patients with moderate-to-severe BPH-related Lower Urinary Tract Symptoms

description: Introduction: Benign prostatic hyperplasia (BPH) is the most common cause of lower urinary tract symptoms (LUTS) in males. Curcumin exhibits anti-inflammatory and anti-tumor properties which may be effective for BPH. This multi-arm observational study evaluated the real-world efficacy of QURMIN® (Gamma-cyclodextrin-curcumin Complex-CAVACURMIN®) as single or combination therapy for BPH. Methods: Men with moderate-severe LUTS/BPH receiving a 6-month supplementation with QURMIN® alone or in combination with BPH-specific medication were propensity score matched with patients not taking curcumin and then divided into subgroups based on concomitant baseline treatment. Cohorts were compared in the 6-month variation of IPSS, quality of life (IPSS-QoL), Benign prostatic Hyperplasia Impact Index (BII) and uroflowmetry parameters. Curcumin tolerability was evaluated in terms of discontinuations and adverse effects. Results: The 1:1 propensity score matching resulted in a treatment-naïve (n=152), an alpha-blocker only(AB)(n=138) and a AB+5-alpha reductase inhibitors (5-ARI) (n=78) subgroup. After 6 months, drug-naïve patients taking curcumin reported significant improvement in IPSS-storage (-3.9,p&lt;0.001), IPSS-voiding(-2.0,p=0.011), IPSS-total(-5.9,p&lt;0.001), IPSS-QoL(-3.9,p&lt;0.001), BII(-2.0,p&lt;0.001), Qmax(+3.1 ml/s,p&lt;0.001), Qmean(+1.9 ml/s,p=0.005), PVR(-7.7 ml,p&lt;0.001), and PSA(-0.3 ng/ml,p=0.003), compared to controls. Patients taking ABs and curcumin showed improvement in IPSS-storage(-2.7,p&lt;0.001), IPSS-voiding(-1.3,p=0.033), IPSS-total(-3.5,p&lt;0.001), IPSS-QoL(-1.1,p=0.004), BII(-1.7,p=0.006), Qmax(+1.0 ml/s,p=0.006) and PSA(-0.2 ng/ml,p=0.01). Patients taking curcumin and AB+5-ARI showed improvement in IPSS-storage(-1.3,p=0.007), IPSS-total(-1.6,p=0.034), IPSS-QoL(-1.1,p&lt;0.001) and BII(-2.0,p&lt;0.001). No adverse reactions were reported for curcumin supplementation. Conclusion: QURMIN® (CAVACURMIN®) led to significant improvements in symptom burden, uroflow parameters and QoL, without significant additional side effects, thus proving to be a potential new treatment for BPH, either as a single therapy or in addition to standard treatment.
DOI: 10.6084/m9.figshare.24517234
title: SPSS v29 Data File for Functional imagery training to support adherence to self-guided attentional bias modification training for alcohol consumption

description: This study investigates the use of functional imagery training (FIT) to enhance adherence to self-guided online programs aimed at reducing alcohol consumption among young adults.https://www.anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=12622000985785
DOI: 10.6084/m9.figshare.24517234.v1
title: SPSS v29 Data File for Functional imagery training to support adherence to self-guided attentional bias modification training for alcohol consumption

description: This study investigates the use of functional imagery training (FIT) to enhance adherence to self-guided online programs aimed at reducing alcohol consumption among young adults.https://www.anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=12622000985785
DOI: 10.34740/kaggle/dsv/6909078
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.24517189
title: Religiosity DFS and Vulnerability CLEAN.xlsx

description: We examine how religiosity and digital financial services (DFS) alleviate the plight of vulnerable populations during the COVID-19 pandemic in Ghana. We find that individual religious belief activities are most likely to be exposed to the COVID-19 pandemic, and religion proffers a potent coping strategy against pandemics.
DOI: 10.6084/m9.figshare.24517189.v1
title: Religiosity DFS and Vulnerability CLEAN.xlsx

description: We examine how religiosity and digital financial services (DFS) alleviate the plight of vulnerable populations during the COVID-19 pandemic in Ghana. We find that individual religious belief activities are most likely to be exposed to the COVID-19 pandemic, and religion proffers a potent coping strategy against pandemics.
DOI: 10.5281/zenodo.10078193
title: 3DPC of the Rules Reservoir in Granada (Spain)

description: The Rules Reservoir is located in the vicinity of the Sierra Nevada mountains in Granada, Spain. In this reservoir, a multidisciplinary team conducted a study of slope movements in natural terrain and anthropogenic embankments using geophysical and remote sensing techniques. The results of this work were published in the "Landslides" journal in 2021, and the full article can be accessed through the following link: 
https://link.springer.com/article/10.1007/s10346-021-01728-z
 
Three sources of data were utilized, obtained from the IGN Data Center through the PNOA project. The point clouds used in the analysis were as follows:

Year 2000, Quinquennial flight. Reconstruction performed with Structure-from-Motion (SfM) using Metashape.
Year 2014, LiDAR flight.
Year 2016, PNOA flight. Reconstruction carried out with Structure-from-Motion (SfM) using Metashape.
Both raw and rasterized point cloud datasets are available for conducting the Difference of Digital Elevation Models (DEMs) comparisons.
DOI: 10.5281/zenodo.10078192
title: 3DPC of the Rules Reservoir in Granada (Spain)

description: The Rules Reservoir is located in the vicinity of the Sierra Nevada mountains in Granada, Spain. In this reservoir, a multidisciplinary team conducted a study of slope movements in natural terrain and anthropogenic embankments using geophysical and remote sensing techniques. The results of this work were published in the "Landslides" journal in 2021, and the full article can be accessed through the following link: 
https://link.springer.com/article/10.1007/s10346-021-01728-z
 
Three sources of data were utilized, obtained from the IGN Data Center through the PNOA project. The point clouds used in the analysis were as follows:

Year 2000, Quinquennial flight. Reconstruction performed with Structure-from-Motion (SfM) using Metashape.
Year 2014, LiDAR flight.
Year 2016, PNOA flight. Reconstruction carried out with Structure-from-Motion (SfM) using Metashape.
Both raw and rasterized point cloud datasets are available for conducting the Difference of Digital Elevation Models (DEMs) comparisons.
DOI: 10.34740/kaggle/dsv/6909112
title: Daily Trending Youtube Videos (113 Countries)
DOI: 10.34740/kaggle/dsv/6909048
title: Air Quality Index May 2019 - April 2020 Pakistan
DOI: 10.34740/kaggle/dsv/6909144
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15129/23d6e2d9-ef61-433e-9193-6a313085b531
title: Data for: "Does poor mental health impair the effectiveness of complementary food hy-giene behavior change intervention in rural Malawi? Inclusion of child care-givers with poor mental health in humanitarian action"

description: Full dataset for the manuscript: Does poor mental health impair the effectiveness of complementary food hy-giene behavior change intervention in rural Malawi? Inclusion of child care-givers with poor mental health in humanitarian action
DOI: 10.6084/m9.figshare.24517261
title: Supplementary Material for: Comparing the effect of pre-biopsy rectal cleaning together with biopsy needle disinfection to each technique alone on hospitalization rates because of post-biopsy infections.

description: Introduction: To compare the effects of three techniques: biopsy needle disinfection with 10% formalin solution, povidone-iodine rectal cleaning, and the use of both methods to decrease hospitalization due to infectious complications after transrectal prostate biopsy. Methods: A total of 827 patients were divided into 3 groups. Group 1 patient data were analyzed retrospectively, while groups 2 and 3 patients were followed up prospectively. Group 1 included 361 patients who underwent biopsy needle disinfection with a 10% formalin solution. Group 2 included 235 patients who underwent biopsy needle disinfection and povidone-iodine rectal cleaning. Group 3 included 231 patients who underwent povidone-iodine rectal cleaning only. The outcome scale was the number of patients hospitalized for biopsy-related infection 30 days after the date of transrectal prostate biopsy. Results: The hospitalization rates due to biopsy-related infectious complications were 3.0%, 0%, and 1.7% in Groups 1, 2, and 3, respectively. The only statistically significant difference was found between Groups 1 and 2. Conclusion: Biopsy needle disinfection and rectal cleaning with povidone-iodine seem to have greater potential to reduce infectious complications when applied together. Further prospective studies are required to confirm these findings.
DOI: 10.6084/m9.figshare.24517261.v1
title: Supplementary Material for: Comparing the effect of pre-biopsy rectal cleaning together with biopsy needle disinfection to each technique alone on hospitalization rates because of post-biopsy infections.

description: Introduction: To compare the effects of three techniques: biopsy needle disinfection with 10% formalin solution, povidone-iodine rectal cleaning, and the use of both methods to decrease hospitalization due to infectious complications after transrectal prostate biopsy. Methods: A total of 827 patients were divided into 3 groups. Group 1 patient data were analyzed retrospectively, while groups 2 and 3 patients were followed up prospectively. Group 1 included 361 patients who underwent biopsy needle disinfection with a 10% formalin solution. Group 2 included 235 patients who underwent biopsy needle disinfection and povidone-iodine rectal cleaning. Group 3 included 231 patients who underwent povidone-iodine rectal cleaning only. The outcome scale was the number of patients hospitalized for biopsy-related infection 30 days after the date of transrectal prostate biopsy. Results: The hospitalization rates due to biopsy-related infectious complications were 3.0%, 0%, and 1.7% in Groups 1, 2, and 3, respectively. The only statistically significant difference was found between Groups 1 and 2. Conclusion: Biopsy needle disinfection and rectal cleaning with povidone-iodine seem to have greater potential to reduce infectious complications when applied together. Further prospective studies are required to confirm these findings.
DOI: 10.5281/zenodo.10078041
title: Habitat fragmentation through urbanization selects for low dispersal in an ant species

description: Datasets for the paper published in Oikos entitled "Habitat fragmentation through urbanization selects for low dispersal in an ant species"
Visual_data_table.xlsx: Visual table of the data (not used for the analysis)Script_R.r, data_R.xlsx, Var_sites_R.xlsx: script and data used for the analysis
DOI: 10.5281/zenodo.10069958
title: Cortical somatostatin long-range projection neurons and interneurons exhibit divergent developmental trajectories

description: Spatial transcriptomic data with 94 gene panels on P5 mouse neocortex. Files here include raw tiff files, results/spot counts, DAPI files for ROI segmentation, ROI segmented, final measurement with annotated region and counts.
DOI: 10.5281/zenodo.10069959
title: Cortical somatostatin long-range projection neurons and interneurons exhibit divergent developmental trajectories

description: Spatial transcriptomic data with 94 gene panels on P5 mouse neocortex. Files here include raw tiff files, results/spot counts, DAPI files for ROI segmentation, ROI segmented, final measurement with annotated region and counts.
DOI: 10.11583/dtu.24514312
title: Raw data of Biomass and TDA production

description: Although aquaculture is a major player in current and future food production, the routine use of antibiotics provides ample ground for development of antibiotic resistance. An alternative route to disease control is the use of probiotic bacteria such as the marine bacteria <i>Phaeobacter inhibens</i> which produces tropodithietic acid (TDA) that inhibit pathogens without affecting the fish. Improving conditions for the formation of biofilm and TDA-synthesis is a promising avenue for biocontrol in aquaculture. In this study, the biosynthesis of TDA by <i>Phaeobacter inhibens</i> grown on micro-structured polymeric surfaces in micro-fluidic flow-cells is investigated. The formation of biofilms on three surface topographies; hexagonal micro-pit-arrays, hexagonal micro-pillar-arrays, and planar references is investigated. The biomass on these surfaces is measured by a non-invasive confocal microscopy 3D imaging technique, and the corresponding TDA production is monitored by liquid chromatography mass spectrometry (LC-MS) in samples collected from the outlets of the microfluidic channels. Although all surfaces support growth of <i>P. inhibens</i>, biomass appears to be decoupled from total TDA biosynthesis as the micro-pit-arrays generate the largest biomass while the micro-pillar-arrays produce significantly higher amounts of TDA. The findings highlight the potential for optimized micro-structured surfaces to maintain biofilms of probiotic bacteria for sustainable aquacultures.