cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1409398.v168
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1403621.v1
title: Figure 2a - fractional size of species

description: Data to produce figure 2a - fractional size (length/maximum length) of species in 100m depth bands. Species names can be found in 'Species codes'. See link for fileset description.
DOI: 10.6084/m9.figshare.1409398.v169
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1403617.v2
title: University of Sheffield APCs 2015 (Jan-July)

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Sheffield during the first half of 2015 (1 January - 18 July). The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Sheffield Library. Updated on 31 July to include figures up to an including 18 July.
DOI: 10.6084/m9.figshare.1403617.v1
title: University of Sheffield APCs 2015 (Q1)

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Sheffield during the first quarter of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Sheffield Library.
DOI: 10.6084/m9.figshare.1409398.v170
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1403609
title: Tentacle quantification accuracy evaluation

description: <strong>Tentacle quantification accuracy evaluation</strong> This zip file contains three subfolders containing Tentacle output from the coverage evaluation study, along with an IPython Notebook containing details on experimental design, data used, how the test data was generated, computations, plots and results. These results are part of the publication "Tentacle: distributed quantification of genes in metagenomes" by Boulund et al. 2015. To view and interactively study the code in the notebook we recommend the freely available Anaconda Scientific Python distribution (https://store.continuum.io/cshop/anaconda/) that contains all the Python packages required to run the notebook.
DOI: 10.6084/m9.figshare.1403608
title: Tentacle scaling benchmark

description: <strong>Tentacle scaling benchmark</strong> This is a zip file that contains an IPython Notebook with a description of the experimental design, along with the code to compute the results required to produce the figure used in the publication "Tentacle: distributed quantification of genes in metagenomes" by Boulund et al. 2015. To interactively view and run the IPython notebook we recommend the freely available Anaconda Scientific Python distribution (https://store.continuum.io/cshop/anaconda/) that contains all the Python packages required to run the notebook.
DOI: 10.6084/m9.figshare.1403609.v1
title: Tentacle quantification accuracy evaluation

description: <strong>Tentacle quantification accuracy evaluation</strong> This zip file contains three subfolders containing Tentacle output from the coverage evaluation study, along with an IPython Notebook containing details on experimental design, data used, how the test data was generated, computations, plots and results. These results are part of the publication "Tentacle: distributed quantification of genes in metagenomes" by Boulund et al. 2015. To view and interactively study the code in the notebook we recommend the freely available Anaconda Scientific Python distribution (https://store.continuum.io/cshop/anaconda/) that contains all the Python packages required to run the notebook.
DOI: 10.6084/m9.figshare.1409398.v171
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1403592
title: Creolimax fragrantissima genome data

description: The genome assembly of the ichthyosporean <em>Creolimax fragrantissima</em>, the annotation, mRNA and protein sequences as described in the paper "<em>Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals</em>".
DOI: 10.6084/m9.figshare.1409398.v172
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1402337
title: InputData

description: data used in case study
DOI: 10.6084/m9.figshare.1402347
title: Ambiente Virtual de Aprendizagem (Moodle)

description: You know what it means Moodle? English Modular Object- Oriented Dynamic Learning Environment is a free software to support learning , run in a virtual environment accessible via the Internet or LAN . The program allows the creation of online courses , with a choice of several pages of disciplines , working groups and learning communities. Demystifying...
DOI: 10.6084/m9.figshare.1402326
title: pCASL Sample Data

description: Sample data set for pCASL arterial spin labeling data analysis pripelines.
DOI: 10.6084/m9.figshare.1402337.v1
title: InputData

description: data used in case study
DOI: 10.6084/m9.figshare.1402347.v1
title: Ambiente Virtual de Aprendizagem (Moodle)

description: You know what it means Moodle? English Modular Object- Oriented Dynamic Learning Environment is a free software to support learning , run in a virtual environment accessible via the Internet or LAN . The program allows the creation of online courses , with a choice of several pages of disciplines , working groups and learning communities. Demystifying...
DOI: 10.6084/m9.figshare.1402326.v1
title: pCASL Sample Data

description: Sample data set for pCASL arterial spin labeling data analysis pripelines.
DOI: 10.6084/m9.figshare.1409398.v173
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1402263
title: Evidence Information Service, UK National Consultation Exercise

description: This archive contains raw and processed data associated with the Evidence Information Service consultation exercise.
DOI: 10.6084/m9.figshare.1402292
title: Music and science survey results

description: Results from a survey asking about the extent to which music or science plays a role in people's lives. Blog post at http://easternblot.net/2015/05/11/musicians-and-scientists-survey-results/ This document contains a total of 763 anonymized survey responses. Based on participants' answers, they were grouped into one of four categories: Musician only, Scientist only, Both, or Neither. Participants were recruited via mailing lists, twitter, and other social media. Since participation was voluntary, there is a strong bias towards people who are already active as musician or scientist.
DOI: 10.6084/m9.figshare.1402253
title: Functional Leaf Traits (55 spp. in central Panama)

description: We intensively measured 17 leaf functional traits of 55 woody species (n = 875 - 1761 individuals) across a successional gradient in tropical forests in central Panama (9°13′N, 79°47′W). We measured leaf photosynthetic capacity (Amass), specific leaf area (SLA), leaf mass area (LMA), leaf dry matter content (LDMC), leaf toughness (L_Tough), lamina density (Lamin_Dens), hemi-cellulose content (HemCell_mg_g), cellulose content (Cell_mg_g), lignin content (Lignin_mg_g), foliar Al (Al_mgg), Ca (Ca_mgg), K (K_mgg), Mg (Mg_mgg), N (mgg), and foliar C:N (foliarC_N_mgg), N:P (foliarN_P_mgg), and C:P (foliarC_P_mgg). <br><br>Here, we present species' means of these functional traits in standardised format, with the following columns: scientificName, traitName, traitID, traitValue, traitUnit, traitNameStd, traitValueStd, traitUnitStd, and measurementID. Trait standardisation was performed using the "traitdataform" R package (Schneider 2018) and scientific names were harmonized based on the The Plant List using the "taxonstand" R package (Cayuela et al. 2019). <br><br> If you use these data, please cite these articles: <br>Craven, Dylan, Jefferson S. Hall, Graeme P. Berlyn, Mark S. Ashton, and Michiel van Breugel 2018Environmental Filtering Limits Functional Diversity during Succession in a Seasonally Wet Tropical Secondary Forest. Journal of Vegetation Science 29(3): 511–520.https://onlinelibrary.wiley.com/doi/abs/10.1111/jvs.12632<br> Craven, Dylan, Jefferson S. Hall, Graeme P. Berlyn, Mark S. Ashton, and Michiel van Breugel 2015Changing Gears during Succession: Shifting Functional Strategies in Young Tropical Secondary Forests. Oecologia 179(1): 293–305.<em>http://dx.doi.org/10.1007/s00442-015-3339-x</em><em><br></em> Please e-mail with questions: dylan.craven@aya.yale.edu
DOI: 10.6084/m9.figshare.1402263.v1
title: Evidence Information Service, UK National Consultation Exercise

description: This archive contains raw and processed data associated with the Evidence Information Service consultation exercise.
DOI: 10.6084/m9.figshare.1409398.v174
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1402240
title: ICA maps for "Dynamic brain functional connectivity modulated by resting-state networks"

description: Nine ICA (independent component analysis) maps used in our paper titled "Dynamic brain functional connectivity modulated by resting-state networks". The labels of these maps are as follows:<br>IC 19, DMN<br>IC 4, salience<br>IC 10, Attention<br>IC 6, L Ex<br>IC 11, R Ex<br>IC 16, motor<br>IC 2, primary visual<br>IC 15, second visual<br>IC 17, auditory Detailed information of data processing can refer to: http://link.springer.com/article/10.1007/s00429-013-0634-3
DOI: 10.6084/m9.figshare.1402187
title: Gaussian Job Archive for C6H6Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1402207
title: ICA maps for "Modulatory interactions between the default mode network and task positive networks in resting-state"

description: Six ICA (independent component analysis) maps used in our paper titled "Modulatory interactions between the default mode network and task positive networks in resting-state". The labels of these maps are as follows:<br>ICA 18: aDMN<br>ICA 19: pDMN<br>ICA 20: Attention<br>ICA 14: Salience<br>ICA 17: L. Executive<br>ICA 2: R. Executive Detailed information of data processing can refer to: https://peerj.com/articles/367/
DOI: 10.6084/m9.figshare.1402240.v1
title: ICA maps for "Dynamic brain functional connectivity modulated by resting-state networks"

description: Nine ICA (independent component analysis) maps used in our paper titled "Dynamic brain functional connectivity modulated by resting-state networks". The labels of these maps are as follows:<br>IC 19, DMN<br>IC 4, salience<br>IC 10, Attention<br>IC 6, L Ex<br>IC 11, R Ex<br>IC 16, motor<br>IC 2, primary visual<br>IC 15, second visual<br>IC 17, auditory Detailed information of data processing can refer to: http://link.springer.com/article/10.1007/s00429-013-0634-3