cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/yp8m6c
title: 2_processed_data.zip

description: :unav
DOI: 10.57745/ivjrbl
title: 0_raw_data.zip

description: :unav
DOI: 10.17615/85h3-p995
title: Dataset of expected stimulant drug samples

description: Samples of expected stimulants drugs and lab results.
DOI: 10.26036/cnp0000468
title: Single-cell RNA sequencing unveils distinctive immune microenvironment during oral carcinogenesis

description: Oral carcinogenesis is a complex and multifaceted process, and the acquisition of malignant features occurs involving a broad range of dynamic variations. Immune microenvironment, as a complex system, consists of a variety of immune cells, and the interaction between tumor-infiltrating immune cells and epithelia plays an important role in the occurrence and development of oral squamous cell carcinoma. The 4NQO rat cancer model is one of the most extensively studied animal systems for its close similarity to human malignant transformation at the histological and molecular levels. Here, we profiled transcriptomes of single cells from 6 rat models, including three dysplasia and three OSCC rats. By comparing with dysplasia and tumor samples, we suggested distinct immune patterns, including epithelia, stromal and immune cells interactions. Overall, our research provides distinctive insights into regulation of immune microenvironment during oral carcinogenesis.
DOI: 10.6084/m9.figshare.25078061
title: Regulatory Compliance Survey Dataset and Survey

description: Survey and Dataset asking questions on respondents perception on their Organization's Regulatory and Security Standard practices.
DOI: 10.6084/m9.figshare.25134800
title: cox1 alignment of Achlya species

description: cox1 alignment of Achlya species
DOI: 10.6084/m9.figshare.25093178
title: Metabolomic Profiling Reveals Key Metabolites Associated with Hypertension Progression

description: Introduction: Pre-hypertension is a prevalent condition among the adult population worldwide. It is characterized by asymptomatic elevations in blood pressure beyond normal levels but not yet reaching the threshold for hypertension. If left uncontrolled, pre-hypertension can progress to hypertension, thereby increasing the risk of serious complications such as heart disease, stroke, kidney damage, and others. Objective: The precise mechanisms driving the progression of hypertension remain unknown. Thus, identifying the metabolic changes associated with this condition can provide valuable insights into potential markers or pathways implicated in the development of hypertension. Methods: In this study, we utilized untargeted metabolomics profiling, which examines over 1,000 metabolites to identifynovel metabolites contributing to the progression from pre-hypertension to hypertension. Data were collected from 323 participants through Qatar Biobank. Results: By comparing metabolic profiles between pre-hypertensive, hypertensive and normotensive individuals, six metabolites including stearidonate, hexadecadienoate, N6-carbamoylthreonyladenosine, 9 and 13-S-hydroxyoctadecadienoic acid (HODE), 2,3-dihydroxy-5-methylthio- 4-pentenoate (DMTPA), and linolenate were found to be associated with increased risk of hypertension, in both discovery and validation cohorts. Moreover, these metabolites showed a significant diagnostic performance with area under curve &gt;0.7. Conclusion: These findings suggest possible biomarkers that can predict the risk of progression from pre-hypertension to hypertension. This will aid in early detection, diagnosis, and management of this disease as well as its associated complications.<br>
DOI: 10.17615/ap3g-w270
title: Matlab code to process 1D Varian spectroscopy data

description: The matlab file is to open and process 1D Varian spectroscopy data
DOI: 10.6084/m9.figshare.25134392
title: RSL - Qualidade no jornalismo - Resultado das Pesquisas.xlsx

description: Este arquivo apresenta os resultados de uma pesquisa de trabalhos científicos sobre qualidade no jornalismo e detalha o processo de codificação e seleção destes trabalhos para compor a amostra de uma revisão sistemática de literatura.
DOI: 10.6084/m9.figshare.25134392.v2
title: RSL - Qualidade no jornalismo - Resultado das Pesquisas.xlsx

description: Este arquivo apresenta os resultados de uma pesquisa de trabalhos científicos sobre qualidade no jornalismo e detalha o processo de codificação e seleção destes trabalhos para compor a amostra de uma revisão sistemática de literatura.
DOI: 10.6084/m9.figshare.25134392.v1
title: RSL - Qualidade no jornalismo - Resultado das Pesquisas.xlsx

description: Este arquivo apresenta os resultados de uma pesquisa de trabalhos científicos sobre qualidade no jornalismo e detalha o processo de codificação e seleção destes trabalhos para compor a amostra de uma revisão sistemática de literatura.
DOI: 10.17615/zc1m-fq29
title: Impact of malaria diagnostic choice on monitoring of Plasmodium falciparum prevalence estimates in the Democratic Republic of the Congo and relevance to control programs in high-burden countries 

description: These data were used used to compared diagnostic performance and Plasmodium falciparum prevalence estimates across health areas of varying transmission intensity to illustrate the relevance of diagnostic assay performance to malaria control programs, especially in high burden countries like the Democratic Republic of the Congo.
DOI: 10.5281/zenodo.10610961
title: FoNDUE-HTR/FONDUE-MLT-PRINT-TEST

description: FONDUE-MLT-PRINT-TEST

Dataset made of XML-ALTOs and images to test OCR models. Data are produced with eScriptorium.

Languages covered are: French (16th, 17th, 18th, 19th, 20th, 21th c.), Catalan, German, Spanish, Italian (19th-20th c.), French Creole (19th c.), Alsatian and Picard (20th c.).
DOI: 10.5281/zenodo.10610960
title: FoNDUE-HTR/FONDUE-MLT-PRINT-TEST

description: FONDUE-MLT-PRINT-TEST

Dataset made of XML-ALTOs and images to test OCR models. Data are produced with eScriptorium.

Languages covered are: French (16th, 17th, 18th, 19th, 20th, 21th c.), Catalan, German, Spanish, Italian (19th-20th c.), French Creole (19th c.), Alsatian and Picard (20th c.).
DOI: 10.6084/m9.figshare.25134887
title: Supplementary Material for: Clinical impact of proton pump inhibitor and potassium-competitive acid blocker for predicting the curability of endoscopic resection in ulcerative early gastric cancer

description: Background: Endoscopic diagnosis is essential for predicting the curability of early gastric cancer (EGC; R0 resection) before treatment, but the relationship between ulcerative lesions and clinical outcomes remains unclear. We aimed to investigate the effect of proton pump inhibitor (PPI) or potassium-competitive acid blocker (P-CAB) on the morphological changes of ulcerative EGCs and its relevance to the clinical outcomes. Methods: Altogether, 143 patients with differentiated ulcerative EGC that were resected by endoscopic submucosal dissection were retrospectively identified and divided into the following two cohorts depending on their PPI/P-CAB administration status: PPI/P-CAB (n = 76) and non-PPI/P-CAB (n = 67) cohorts. Furthermore, in each cohort, the patients were further divided into the improved and unimproved subgroups based on the ulcerative changes. Results: In the PPI/P-CAB cohort, the deep submucosal invasion and lymphovascular invasion rates were significantly higher in the unimproved subgroup than in the improved subgroup, resulting in a significantly lower R0 resection rate. Contrarily, no significant differences were found between the two subgroups in the non-PPI/P-CAB cohort. The significance of PPI/P-CAB administration was observed only in the ulcerative EGCs with open-type atrophy (R0 resection rate; improved vs. unimproved, 90.9% vs. 48.0%, p = 0.001). When the finding of improved ulcer with PPI/P-CAB administration was used as the indication of endoscopic resection in ulcerative EGCs with open-type atrophy, high sensitivity (78.9%) and accuracy (76.3%) rates for the curability were observed which were higher than those of conventional endoscopic diagnosis alone (p = 0.021). Conclusion: PPI or P-CAB administration might contribute to the potential selection of ulcerative EGCs, enabling endoscopic curative resection.
DOI: 10.6084/m9.figshare.25134887.v1
title: Supplementary Material for: Clinical impact of proton pump inhibitor and potassium-competitive acid blocker for predicting the curability of endoscopic resection in ulcerative early gastric cancer

description: Background: Endoscopic diagnosis is essential for predicting the curability of early gastric cancer (EGC; R0 resection) before treatment, but the relationship between ulcerative lesions and clinical outcomes remains unclear. We aimed to investigate the effect of proton pump inhibitor (PPI) or potassium-competitive acid blocker (P-CAB) on the morphological changes of ulcerative EGCs and its relevance to the clinical outcomes. Methods: Altogether, 143 patients with differentiated ulcerative EGC that were resected by endoscopic submucosal dissection were retrospectively identified and divided into the following two cohorts depending on their PPI/P-CAB administration status: PPI/P-CAB (n = 76) and non-PPI/P-CAB (n = 67) cohorts. Furthermore, in each cohort, the patients were further divided into the improved and unimproved subgroups based on the ulcerative changes. Results: In the PPI/P-CAB cohort, the deep submucosal invasion and lymphovascular invasion rates were significantly higher in the unimproved subgroup than in the improved subgroup, resulting in a significantly lower R0 resection rate. Contrarily, no significant differences were found between the two subgroups in the non-PPI/P-CAB cohort. The significance of PPI/P-CAB administration was observed only in the ulcerative EGCs with open-type atrophy (R0 resection rate; improved vs. unimproved, 90.9% vs. 48.0%, p = 0.001). When the finding of improved ulcer with PPI/P-CAB administration was used as the indication of endoscopic resection in ulcerative EGCs with open-type atrophy, high sensitivity (78.9%) and accuracy (76.3%) rates for the curability were observed which were higher than those of conventional endoscopic diagnosis alone (p = 0.021). Conclusion: PPI or P-CAB administration might contribute to the potential selection of ulcerative EGCs, enabling endoscopic curative resection.
DOI: 10.17615/kxbk-dz36
title: Dolostone as a reliable tracer of seawater lithium isotope composition

description: The lithium isotope composition (δ7Li) of seawater records important information on the evolution of the carbon and silicon cycles over geologic time. Here we report δ7Li values in a suite of Neogene dolostones (23–3.4 Ma, n = 39) from the South China Sea. Over the Neogene, dolostone δ7Li values have increased from 24.9‰ to 30.1‰, overlapping previously published foraminifera records and documenting seawater δ7Li without applying any isotopic fractionation factor correction. Our results suggest that fabric-retentive dolostones are good proxies for providing seawater δ7Li records even after early diagenesis. Importantly, these results provide a high-resolution dolostone record rather than a foraminifera record to confirm the observed ~5‰ increase in Neogene seawater δ7Li. We predict that early marine diagenetic dolostones with fabric textures abundant in the Proterozoic may record changes in seawater δ7Li and continental weathering, providing great insights into the Precambrian global carbon cycle.
DOI: 10.5281/zenodo.8226804
title: Rate coefficients  for inelastic Y+/Y-H  collisions

description: Rate coefficients in cm3s−1 for inelastic Y+H (include Y++H−) and Y++H (include Y2++H−) collisions at temperatures from T=1000K to T=10000K. 

For details see ReadMe.txt.
DOI: 10.5281/zenodo.8226805
title: Rate coefficients  for inelastic Y+/Y-H  collisions

description: Rate coefficients in cm3s−1 for inelastic Y+H (include Y++H−) and Y++H (include Y2++H−) collisions at temperatures from T=1000K to T=10000K. 

For details see ReadMe.txt.
DOI: 10.5281/zenodo.8065807
title: A super-pangenome of the North American wild grape species

description: https://doi.org/10.1186/s13059-023-03133-2
DOI: 10.5281/zenodo.8065808
title: A super-pangenome of the North American wild grape species

description: https://doi.org/10.1186/s13059-023-03133-2
DOI: 10.5281/zenodo.10587575
title: Autonomous closed-loop mechanistic investigation of molecular electrochemistry via automation

description: Here we provide the source data and source code associated with our manuscript (NCOMMS-23-50331-T) entitled "Autonomous closed-loop mechanistic investigation of molecular electrochemistry via automation" for its forthcoming publication in Nature Communications.

'Source Data.zip' contains the raw data for the main text figures.

'Source Code.zip' contains both the code for automated exhaustive experiment and the code for autonomous closed-loop workflow presented in the manuscript.

'Deep-learning model for voltammogram analysis.zip' contains the deep-learning model file used in the code.
description: Electrochemical research often requires stringent combinations of experimental parameters that are demanding to manually locate. Recent advances in automated instrumentation and machine-learning algorithms unlock the possibility for accelerated studies of electrochemical fundamentals via high-throughput, online decision-making. Here we report an autonomous electrochemical platform that implements an adaptive, closed-loop workflow for mechanistic investigation of molecular electrochemistry. As a proof-of-concept, this platform autonomously identifies and investigates an EC mechanism, an interfacial electron transfer (E step) followed by a solution reaction (C step), for cobalt tetraphenylporphyrin exposed to a library of organohalide electrophiles. The generally applicable workflow accurately discerns the EC mechanism’s presence amid negative controls and outliers, adaptively designs desired experimental conditions, and quantitatively extracts kinetic information of the C step spanning over 7 orders of magnitude, from which mechanistic insights into oxidative addition pathways are gained. This work opens opportunities for autonomous mechanistic discoveries in self-driving electrochemistry laboratories without manual intervention.
DOI: 10.5281/zenodo.10587576
title: Autonomous closed-loop mechanistic investigation of molecular electrochemistry via automation

description: Here we provide the source data and source code associated with our manuscript (NCOMMS-23-50331-T) entitled "Autonomous closed-loop mechanistic investigation of molecular electrochemistry via automation" for its forthcoming publication in Nature Communications.

'Source Data.zip' contains the raw data for the main text figures.

'Source Code.zip' contains both the code for automated exhaustive experiment and the code for autonomous closed-loop workflow presented in the manuscript.

'Deep-learning model for voltammogram analysis.zip' contains the deep-learning model file used in the code.
description: Electrochemical research often requires stringent combinations of experimental parameters that are demanding to manually locate. Recent advances in automated instrumentation and machine-learning algorithms unlock the possibility for accelerated studies of electrochemical fundamentals via high-throughput, online decision-making. Here we report an autonomous electrochemical platform that implements an adaptive, closed-loop workflow for mechanistic investigation of molecular electrochemistry. As a proof-of-concept, this platform autonomously identifies and investigates an EC mechanism, an interfacial electron transfer (E step) followed by a solution reaction (C step), for cobalt tetraphenylporphyrin exposed to a library of organohalide electrophiles. The generally applicable workflow accurately discerns the EC mechanism’s presence amid negative controls and outliers, adaptively designs desired experimental conditions, and quantitatively extracts kinetic information of the C step spanning over 7 orders of magnitude, from which mechanistic insights into oxidative addition pathways are gained. This work opens opportunities for autonomous mechanistic discoveries in self-driving electrochemistry laboratories without manual intervention.
DOI: 10.5525/gla.researchdata.1582
title: A one-dimensional model for focal adhesion and cytoskeleton formation in non-motile cells

description: Data for figures in `A one-dimensional model for focal adhesion and cytoskeleton formation in non-motile cells'
DOI: 10.21985/n2-0p46-wr66
title: Behavioral Economics Applications to Geriatrics Leveraging EHRs R33 Trial
DOI: 10.5519/qd.0zz05xzx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (320 records)
DOI: 10.17615/kjjg-7a88
title: Nonfalciparum Malaria in DRC - Cohort Dataset 

description: This dataset contains participant data from a longitudinal cohort study of malaria in Kinshasa, Democratic Republic of Congo that was conducted between 2015-2017.  Data include household survey data from baseline and 3 follow-up visits, as well as clinic questionnaire data collected each time participants presented to a study health clinic with malaria symptoms during the study follow-up period.
DOI: 10.13145/bacdive139621.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139622.20230509.8
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139623.20230509.8
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.8208216
title: Svalbox-DOM_2023-0001

description: Model description: 
Digital outcrop model of Torelva, in Andrée Land, Svalbard archipelago.

Data availability:
All uploaded archives are to be extracted to the same directory for a functional working environment, i.e., at the very least consisting of a project folder with the data and metashape subdirectories. The included processing report specifies the processing parameters that were used as input for the processing software (Agisoft Metashape, v2.0.2.16334).
Georeferencing data use CRS epsg:4326.Exported model data use CRS epsg:32633.

Show and visualise on Svalbox.no:
Through Svalbox we aim to take geoscientific research and education to the next level – with the simple motto of placing all key information and data sets in their correct spatial position. We bring modern technology, in particular cost-effective digital outcrops, to complement more than 200 years of geoscientific research on Svalbard. Finally, Svalbox provides a sustainable platform for sharing results, workflows and teaching material with the wider geoscientific community.

For more information, contact the Svalbox team at svalbox[at]gmail.com.
DOI: 10.5281/zenodo.8208217
title: Svalbox-DOM_2023-0001

description: Model description: 
Digital outcrop model of Torelva, in Andrée Land, Svalbard archipelago.

Data availability:
All uploaded archives are to be extracted to the same directory for a functional working environment, i.e., at the very least consisting of a project folder with the data and metashape subdirectories. The included processing report specifies the processing parameters that were used as input for the processing software (Agisoft Metashape, v2.0.2.16334).
Georeferencing data use CRS epsg:4326.Exported model data use CRS epsg:32633.

Show and visualise on Svalbox.no:
Through Svalbox we aim to take geoscientific research and education to the next level – with the simple motto of placing all key information and data sets in their correct spatial position. We bring modern technology, in particular cost-effective digital outcrops, to complement more than 200 years of geoscientific research on Svalbard. Finally, Svalbox provides a sustainable platform for sharing results, workflows and teaching material with the wider geoscientific community.

For more information, contact the Svalbox team at svalbox[at]gmail.com.
DOI: 10.13145/bacdive139624.20230509.8
title: Altererythrobacter luteolus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139625.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139626.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139627.20230509.8
title: Pseudopropionibacterium propionicum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139628.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139629.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139630.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139631.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139632.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139633.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139634.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139635.20230509.8
title: Cutibacterium avidum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive139636.20230509.8
title: Cutibacterium acnes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.