cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1801qd8
title: Data from: Conflicting selection on Cneorum tricoccon (Rutaceae) seed size caused by native and alien seed dispersers

description: The disappearance of native seed dispersers due to anthropogenic
 activities is often accompanied by the introduction of alien species,
 which may to some extent replace the ecological service provided by the
 extinct ones. Yet, little empirical evidence exists demonstrating the
 evolutionary consequences of such alien ‘replacement’. Here, we document
 the conflicting selection exerted on seed size by two native lizards
 (Podarcis lilfordi and P. pityusensis) and an alien mammal species (Martes
 martes), all acting as legitimate seed dispersers of the Mediterranean
 relict Cneorum tricoccon. While lizards mostly exerted a negative
 directional selection on seed diameter, especially P. pityusensis, the
 much larger pine marten exerted positive selection on seed size. Our
 findings suggest that this among-disperser variation in the selection
 regimes, together with the occurrence of spatial variation in the presence
 of each of seed disperser, help to create the geographical variation
 observed for seed size of C. tricoccon. To our knowledge, this is the
 first empirical evidence showing opposing selective pressures between
 native and alien species in the seed dispersal process in an invaded
 ecosystem.
description: DATA_CNEORUM_seed_size_CONTROL_PLANT_ID_climate_varsThis file contains the data on seed diameter of Cneorum tricoccon for all the study populations, considering only seeds collected directly from plants (i.e, undispersed seeds). Data on mean anual precipitation and temperature are given. We indicate the different species of disperser present in each population, with an extra-column showing if the disperser is native (in the case of lizards) or exotic (in the case of pine-martens). This is the file we have used to test for differences in seed size among populations and to assess whether this variable is affected by climatic variables.DATA_CNEORUM_seed_size_all_disp_climate_varsThis file contains data on seed diameter of Cneorum tricoccon from the different treatments (controls vs defecated/dispersed by each of the three different species: pine martens or either of the two lizards, Podarcis lilfordi or Podarcis pityusensis). In another column we code the treatment as 0 or 1 (indicating control and defecated seeds, respectively). This is the data file used for the seed selection analyses. We also include data on the climatic variables obtained for each population (mean anual precipitation and temperature).DATA_CNEORUM_GERMINATIONThis file contains data on the germination of seeds of Cneorum tricoccon from the different treatments (control vs dispersed by any of the three species) in each population. Data are given for each separate seed, indicating whether the seed germinated (1) or not (0). Weight (g) of each seed is given in the last column.
DOI: 10.5061/dryad.p79tm37
title: Data from: Ecology and evolution of blood oxygen-carrying capacity in birds

description: Blood oxygen-carrying capacity is one of important determinants of oxygen
 amounts supplied to the tissues per unit time and plays a key role in
 oxidative metabolism. In wild vertebrates, blood oxygen-carrying capacity
 is most commonly measured with the total blood haemoglobin concentration
 (Hb) and haematocrit (Hct), which is the volume percentage of red blood
 cells in blood. Here, I used published estimates of avian Hb and Hct
 (nearly one thousand estimates from 300 species) to examine
 macroevolutionary patterns in blood oxygen-carrying capacity of blood in
 birds. Phylogenetically-informed comparative analysis indicated that blood
 oxygen-carrying capacity was primarily determined by species distribution
 (latitude and elevation) and morphological constraints (body mass). I
 found little support for the effect of life history components on blood
 oxygen-carrying capacity, except for a positive association of Hct with
 clutch size. Hb was also positively associated with diving behaviour, but
 I found no effect of migratoriness on either Hb or Hct. Fluctuating
 selection was identified as the major force shaping the evolution of blood
 oxygen-carrying capacity. The results offer novel insights into the
 evolution of Hb and Hct in birds, as well as they provide a general,
 phylogenetically-robust support for some long-standing hypotheses in avian
 ecophysiology.
description: Minias RAW
 DATARaw data for
 "Ecology and evolution of blood oxygen-carrying capacity in
 birds".
DOI: 10.6078/d10d6p
title: MHD field line tracing for 2017 Sept ICME study

description: Many aspects of the Sun-Mars interaction have been investigated during
 solar transient events with measurements from multiple spacecrafts and
 also simulation efforts. Limited discussion has been paid to magnetic
 topology response to disturbed upstream conditions. The implications of
 topology changes include, but are not limited to, the pattern of energetic
 particle precipitation into the Martian atmosphere and the impact on cold
 ion escape during solar transient events as low-energy ion escape is
 dependent on magnetic topology. In this study, we investigate the magnetic
 topology response to the 2017 September interplanetary coronal mass
 ejection (ICME) event with measurements collected by the Mars Atmospheric
 and Volatile EvolutioN spacecraft. It is found that the interface between
 draped interplanetary magnetic field and closed field lines was moved from
 800–1400 km in altitude during quiet conditions to 200–400 km after ICME
 arrived at Mars and then relaxed back to high altitudes again after the
 event. To gain insight into magnetic topology response on a global scale,
 we first validate magnetic topology from a time-dependent simulation with
 a single-fluid multispecies magnetohydrodynamic (MHD) model by comparing
 magnetic topology determined from Mars Atmospheric and Volatile EvolutioN
 data, which shows a good agreement. Then we present MHD predictions of
 global magnetic topology changes during this ICME event. In addition to a
 deeper interplanetary magnetic field penetration, MHD results suggest more
 open field lines in response to the ICME event.
description: Datasets supporting the manuscript, "Investigation of
 Martian Magnetic Topology Response to 2017 September ICME", published
 in Geophysical Research Letters. All datasets are magnetic field line
 tracing results derived from magnetohydrodynamics (MHD) simulation results
 for the 2017 September ICME (interplanetary coronal mass ejection)
 event. All files are in simple ASCII format, with descriptive
 headers.
DOI: 10.25345/c5gf0n926
title: MassIVE MSV000100604 - S. chartreusis fed w 10ug acarbose 01.27.26
title: s chartreusis singlet feeding 10ug acarbose w ISPM blank
DOI: 10.5061/dryad.wpzgmsbgn
title: Species diversity of fungal endophytes across a stress gradient for plants

description: Foliar fungal endophytes are one of the most diverse guilds of symbiotic
 fungi found in the photosynthetic tissues of every plant lineage, but it
 is unclear how plant environments and leaf resource availability shape
 their diversity. We explored correlations between leaf nutrient
 availability and endophyte diversity among Pinus
 muricata and Vaccinium ovatum plants growing
 across a soil nutrient gradient spanning a series of coastal terraces in
 Mendocino, California. Endophyte richness decreased in plants with higher
 leaf nitrogen‐to‐phosphorus ratios for both host species, but increased
 with sodium, which may be toxic to fungi at high concentrations. Isolation
 frequency, a proxy of fungal biomass, was not significantly predicted by
 any of the same leaf constituents in the two plant species. We propose
 that stressed plants can exhibit both low foliar nutrients or high levels
 of toxic compounds, and that both of these stress responses predict
 endophyte species richness. Stressful conditions that limit growth of
 fungi may increase their diversity due to the suppression of otherwise
 dominating species. Differences between the host species in their
 endophyte communities may be explained by host specificity, leaf
 phenology, or microclimates.
DOI: 10.5061/dryad.m60f221
title: Data from: Safety cues can give prey more valuable information than danger cues

description: The ability of prey to assess predation risk is fundamental to their
 success. It is routinely assumed predator cues do not vary in reliability
 across levels of predation risk. We propose that cues can differ in how
 precisely they indicate different levels of predation risk. What we call
 danger cues precisely indicate high risk levels, while safety cues
 precisely indicate low risk levels. Using optimality modeling, we find
 that prey fitness is increased when prey pay more attention to safety cues
 than danger cues. This fitness advantage is greatest when prey need to
 protect assets, predators are more dangerous, and predation risk increases
 at an accelerating rate with prey foraging efforts. Each of these
 conditions lead to prey foraging less when estimated predation risk is
 higher. Danger cues have less value than safety cues because they give
 precise information about risk when it is high, but prey behavior varies
 little when risk is high. Safety cues give precise information about
 levels of risk where prey behavior varies. These results highlight how our
 fascination with predators may have biased the way we study predator-prey
 interactions and focused too exclusively on cues that clearly indicate the
 presence of predator rather than cues that clearly indicate their absence.
description: Safety cue code Aug2019
 BetaThe first half of this R
 code is written for the main model in the paper where an individual's
 terminal fitness is equal to their foraging success (if they alive at the
 end of the time steps). Second half is for when individuals immediately
 gain fitness whenever they find food.Safety cue code
 Aug2019.R
DOI: 10.5061/dryad.nc270f2
title: Data from: The variation of grain size distribution in rock granular material in seepage process considering the mechanical-hydrological-chemical coupling effect: An experimental research

description: As a common solid waste in geotechnical engineering, rock granular
 material should be properly treated and recycled. Rock granular material
 often coexists with water when it is used as the filling material in
 geotechnical engineering. Water flowing in rock granular materials is a
 complex progress with the mechanical-hydrological-chemical (MHC) coupling
 effect, i. e. the water scours in the gaps and spaces in the rock granular
 material structure, produces chemical reactions with rock grains, rock
 grains squeeze each other under the water pressure and compression leading
 re-breakage and producing secondary rock grains, the fine rock grains are
 migrated with water and rushed out. In this process, rock grain size
 distribution (GSD) changes, it affects the physical and mechanical
 characteristics of the rock granular materials, and even influences the
 seepage stability of the rock granular materials. To study the variation
 of GSD in the rock granular material considering the MHC coupling effect
 after the seepage process, seepage experiments of rock grain samples are
 carried out and analyzed in this paper. The result is expected to have a
 positive impact on further studies of the properties of the rock granular
 material.
description: the residual ratio
 analysis of rock grains without initial compressionthe residual ratio
 analysis of rock grains without initial compression无压实颗粒的残余比分析.opjthe residual ratio analysis of rock grains with initial compression of 10mmthe residual ratio analysis of rock grains with initial compression of 10mm压实10MM颗粒的残余比分析.opjthe residual ratio analysis of rock grains with the sizes of 5-8mm, 8-10mm, and 10-12mm when the initial compression is 0mmthe residual ratio analysis of rock grains with the sizes of 5-8mm, 8-10mm, and 10-12mm when the initial compression is 0mm5-8+8-10+10-12残余比分析(0压实).opjthe residual ratio analysis of rock grains with the sizes of 5-8mm, 8-10mm, and 10-12mm when the initial compression is 10mmthe residual ratio analysis of rock grains with the sizes of 5-8mm, 8-10mm, and 10-12mm when the initial compression is 10mm5-8+8-10+10-12残余比分析.opjthe residual ratio analysis of rock grains with the sizes of 12-15mm, 15-20mm, and 20-25mm when the initial compression is 0mmthe residual ratio analysis of rock grains with the sizes of 12-15mm, 15-20mm, and 20-25mm when the initial compression is 0mm12-15+15-20+20-25残余比分析(0mm压实).opjthe residual ratio analysis of rock grains with the sizes of 12-15mm, 15-20mm, and 20-25mm when the initial compression is 10mmthe residual ratio analysis of rock grains with the sizes of 12-15mm, 15-20mm, and 20-25mm when the initial compression is 10mm12-15+15-20+20-25残余比分析.opj
DOI: 10.6078/d1zh51
title: Data from: Interaction of the westerlies with the Tibetan Plateau in determining the mei-yu termination

description: Boundary topography and model output for "Interaction of the
 westerlies with the Tibetan Plateau in determining the mei-yu
 termination" This dataset contains the boundary topography files and
 key model outputs used in: Kong, W., and J. C. H. Chiang,
 Interaction of the westerlies with the Tibetan Plateau in determining the
 mei-yu termination. Accepted with minor revision, Journal of Climate,
 September 2019  
description: <strong>Data collection and
 processing </strong> Results of the
 extended Plateau simulations ("Plateau_control",
 "Plateau_3deg", "Plateau_6deg",
 "Plateau_10deg") We used the
 Community Earth System Model (CESM) 1.2.2 and chose the component set
 "F_1850_CAM5", which includes the coupler, active atmosphere,
 land, and ice components, and a data ocean. The atmospheric component is
 the Community Atmosphere Model version 5 (CAM5) at 0.9x1.25 horizontal
 resolution and 30 layers of vertical resolution. The sea surface
 temperature is prescribed using observed monthly climatology. Each
 simulation was integrated for 25 years; outputs archived here are pentad
 climatologies derived from the last 20 model years. Please refer to Kong
 and Chiang (2019) for more details.  Archived
 variables: U, V, PRECT, PRECC, PRECL, and Theta_e
 Results of the idealized dry dynamical core
 simulations We used the finite-volume
 dynamical core of CAM5, e.g. the component set "F_IDEAL_PHYS".
 Each simulation was integrated for 5 years; outputs archived here are
 climatologies derived from the last 3 model years. Please refer to Kong
 and Chiang (2019) for more details. Archived variables:
 U, V, eddy height at 500mb, QG stream function, three-dimensional EP
 flux Vertical coordinate
 The vertical coordinate of the above model output was
 interpolated from hybrid coordinate to pressure coordinate using NCAR
 Command Language function:
 https://www.ncl.ucar.edu/Document/Functions/Built-in/vinth2p.shtml.  
description: <strong>Data description </strong>
 Boundary topographies  
 BoundaryTopo.Plateau_xxx.nc files are boundary topography used
 for the extended Plateau simulations
 BoundaryTopo.dycore_xxx.nc files are boundary topography used
 for the dry dynamical core simulations  
 Files with below naming conventions are outputs of
 extended Plateau simulations 
 Plateau_control.xxx.nc
 Plateau_3deg.xxx.nc
 Plateau_6deg.xxx.nc
 Plateau_10deg.xxx.nc 
 Files with below naming conventions are outputs of the
 dynamical core Plateau simulations  
 dycore_Plateau.xxx.nc
 dycore_PlateauS3.xxx.nc
 dycore_PlateauS6.xxx.nc
 dycore_PlateauN3.xxx.nc
 dycore_PlateauN6.xxx.nc
DOI: 10.5061/dryad.2v0c05v
title: Data from: Plant nutrient supply alters the magnitude of indirect interactions between insect herbivores: from foliar chemistry to community dynamics

description:        1. Density- and
 trait-mediated indirect interactions (DMIIs and TMIIs, respectively) are
 important drivers of community dynamics, but how plant nutrients
 (bottom-up effects) affect the magnitude of such indirect interactions has
 been scarcely addressed. 2. To assess the impact of bottom-up
 forces on indirect interactions, we carried out lab and greenhouse
 experiments manipulating plant nutrient supplies in a four-species diamond
 food web consisting of a plant (tomato), two phytophagous insects (a
 leafminer and an aphid), and a predator (a mirid bug) attacking both
 herbivores. 3. Multiple negative indirect effects of the
 leafminer occurred toward the aphids. The presence of its eggs reduced
 aphid population growth through increased predator abundance (DMIIs), and
 larval herbivory both slowed down aphid development and negatively
 affected aphid behavioural pattern (TMIIs) e.g. they spent less time
 feeding; likely owing to enhanced plant chemical defences and/or its
 decreased nutritional quality. Moreover, the low plant nutrient supply
 further magnified TMIIs. 4. Abiotic factors modulated predator-
 and plant-mediated indirect interactions among herbivorous community
 members. Our study highlights the importance of a holistic approach, from
 foliar chemistry to community dynamics, for disentangling interspecific
 interactions in a simple food web.
description: Plant nutrient supply
 alters the magnitude of indirect interactions between insect herbivores:
 from foliar chemistry to community dynamicsData
 file.xlsx
DOI: 10.5061/dryad.pd2tq5g
title: Data from: A taxonomic revision of the whitefish radiation of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei: Coregonidae)

description: The alpha taxonomy of the endemic whitefish of lakes Brienz and Thun,
 Switzerland, is revised. We evaluate the status of seven known species:
 Coregonus steinmanni sp. nov., Coregonus profundus sp. nov. and Coregonus
 acrinasus sp. nov. are endemic to Lake Thun; Coregonus brienzii sp. nov.
 is endemic to Lake Brienz; and C. alpinus, C. albellus, and C. fatioi from
 lakes Brienz and Thun are redescribed. One of these species, C. alpinus,
 is revised, since the lectotype for this species is incongruent with the
 species description given by Kottelat (1997) and Kottelat and Freyhof
 (2007). The name C. alpinus is thus retained for the lectotype designated
 by Kottelat (1997) and a new description of this taxon provided. For the
 species otherwise described by Kottelat (1997) and Kottelat and Freyhof
 (2007) as C. alpinus the new name C. profundus is designated. Coregonus
 acrinasus is genetically partially of allochthonous origin, closely
 related to the radiation of Lake Constance, and we therefore compare it to
 all recognized species of Lake Constance, C. wartmanni, C. macrophthalmus,
 C. arenicolus, and C. gutturosus.
description: Selz_et_al_2020.xlsx
 Readme_Selz_et_al_2020.rtf
description: See Material and Methods section in Selz et al. (2020).
DOI: 10.5061/dryad.g5gk675
title: Data from: A preliminary survey of medium and large‐sized mammals from Lebu Natural Protected Forest, Southwest Showa, Ethiopia

description: Abstract: This study was conducted to determine the species composition
 and diversity of medium and large-sized mammals from Lebu Natural
 Protected Forest, Ethiopia. Surveys were conducted to record mammals
 through direct observation and indirect evidence from three habitat types,
 namely: Natural forest, Bushland, and Riverine forest. A total of 15
 mammalian species was recorded. The species recorded were Papio anubis,
 Chlorocebus aethiops, Tragelaphus scriptus, Canis aureus, Crocuta crocuta,
 Panthera pardus, Procavia capensis, Colobus guereza, Sylvicapra grimmia,
 Orycteropus afer, Helogale parvula, Hystrix cristata, Lepus fagani,
 Potamochoerus larvatus and Phacochoeus africanus. A total of 223 records
 of observations was compiled. 74% of these records (N=167) were obtained
 from direct sight, whereas the rest was recorded through indirect
 evidence. The dominant order recorded was Order Primates (57.4%) followed
 by Order Artiodactyla (17.5 %) while the least record was Order Lagomorpha
 (1.34%). The species richness varied across the stratified habitat types.
 However, there is no significant difference in Shannon-Wiener Index values
 between the habitat types. The species diversity of the study area was
 H’=2. 119. The present study area is of great potential area for the
 conservation of the species. Long-term detailed studies should be carried
 out for effective conservation and management initiatives in the study
 area.
description: Lebu's mammals
 survey data file
DOI: 10.5061/dryad.14t4h37
title: Data from: Species interactions and environmental context affect intraspecific behavioural trait variation and ecosystem function

description: Functional trait-based approaches are increasingly adopted to understand
 and project ecological responses to environmental change; however, most
 assume trait expression is constant between conspecifics irrespective of
 con- text. Using two species of benthic invertebrate (brittlestars
 Amphiura filiformis and A. chiajei), we demonstrate that trait expression
 at individual and com- munity levels differs with biotic and abiotic
 context. We use PERMANOVA to test the effect of species identity, density
 and local environmental history on individual (righting and burrowing) and
 community (particle reworking and burrow ventilation) trait expression, as
 well as associated effects on eco- system functioning (sediment nutrient
 release). Trait expression differs with context, with repercussions for
 the faunal mediation of ecosystem processes; we find increased rates of
 righting and burial behaviour and greater particle reworking with
 increasing density that are reflected in nutrient generation. However, the
 magnitude of effects differed within and between species, aris- ing from
 site-specific environmental and morphological differences. Our results
 indicate that traits and processes influencing change in ecosystem
 functioning are products of both prevailing and historic conditions that
 cannot be constrained within typologies. Trait-based study must
 incorporate context-dependent variation, including intraspecific
 differences from indi- vidual to ecosystem scales, to avoid jeopardizing
 projections of ecosystem functioning and service delivery.
description: <strong>A .zip
 file containing four .xls files of data, where 1) CassidyIndividual
 provides data as to the morphology and behaviour of individual A. chiajei
 and A. filiformis, 2) CassidyBioturbation and 3) CassidyBioirrigation
 provide data as to the mesocosm-level behaviour of communities of A.
 chiajei and A. filiformis, and 4) CassidyNutrients provides data as to the
 mesocosm-level ecosystem functioning of communities of A. chiajei and A.
 filiformis via dissolved nutrient release. Throughout, species are
 abbreviated to 'C' and 'F' respectively; species
 identities are abbreviated to 'C' and 'CM' and
 'F' and 'FM', where the addition of M indicates
 individuals maintained in mixed communities with both species; populations
 from Loch Etive are abbreviated to E and Loch Linnhe to L; and densities
 of categorical magnitude low, medium and high is abbreviated to 1, 2 and
 3.</strong> CassidyProceedingsData.zip