cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27641982.v6
title: Data from: Responses of subsoil organic carbon to climate warming and cooling is determined by microbial community rather than its molecular composition

description: Little is currently known about how long-term climate changes modulate the relationship between soil organic carbon (SOC) molecular composition, microbial community and SOC storage, and the mechanisms involved. Here, we show substantial changes in subsoil SOC in the Qinghai-Tibetan alpine grasslands over 16 years of soil warming and cooling. Warming reduced SOC content by 8.5%, while cooling increased it by 7.0%. Neither warming nor cooling affected plant- and microbial-derived molecular components. However, warming elevated fungal-to-bacterial biomass ratio (F/B) and gram-positive to gram-negative bacterial biomass ratio (G+/G-) by 15.0% and 8.6%, respectively, whereas cooling reduced them by 4.5% and 9.6%. Warming reduced SOC storage by directly increasing F/B and G+/G- and indirectly decreasing the soil carbon-to-nitrogen ratio, whereas cooling enhanced SOC storage primarily by decreasing F/B. Conventional warming experiments, which consider only climate warming and neglect cooling, may underestimate the negative impacts of warming on subsoil SOC pools in alpine grasslands.
DOI: 10.6084/m9.figshare.27871374.v1
title: Human first-trimester heart atlas Seurat RDS file for reanalysis

description: Understanding human cardiac development is essential to improving the diagnosis and treatment of congenital heart defects. This dataset is part of a multi-modal atlas of the developing human fetal heart during the critical first trimester. Using single-nucleus RNA sequencing, we sampled nearly 50,000 cardiac nuclei from three human fetuses at 8.6, 9.0, and 10.7 post-conceptional weeks (pcw). This dataset enabled distinction of 21 cell types, including novel contractile, conductive, and stromal cells. Lymphatic endothelial, epicardial and autonomic neural and glial cells were among the new, smaller populations for which we established high-resolution transcriptional profiles. This is the *.rds file of the cells from all three hearts generated after Seurat-based integration and analysis in R.<br>This dataset is part of a greater project also comprising spatial transcriptomics, anatomy, histology, in situ hybridization and 2D and 3D immunofluorescence, most of which is also present on Figshare. The count matrices and the raw sequencing data for the spatial transcriptomics and this dataset will be available on GEO shortly.<br><i>This publication is part of the Human Cell Atlas. </i>https://www.humancellatlas.org/publications/
DOI: 10.6084/m9.figshare.28386431.v2
title: Supplementary data files

description: We measured N<sub>2</sub> fixation along the Western Antarctic Peninsula (WAP) and at Palmer Station over two austral summer months. N<sub>2</sub> fixation rates measured by <sup>15</sup>N<sub>2</sub> assays were below conservative detection limits, despite being detected when using less stringent detection thresholds, suggesting a potential for N<sub>2</sub> fixation. This was confirmed by our continuous acetylene reduction method (FARACAS). <i>nifH </i>gene amplicon sequencing revealed that Gammaproteobacteria were the dominant class of identified diazotrophs in the WAP’s coastal waters. However, Epsilonproteobacteria contributed disproportionally to <i>nifH</i> expression, particularly when putative N<sub>2</sub> fixation rates were at the highest. Combining diazotroph communities with environmental observations, we hypothesize that vertical water mixing resuspended sediments into the water column and contributed to the limited N<sub>2</sub> fixation in Antarctic waters.
DOI: 10.17632/3h4mt7xryk
title: COBRE dataset (Locally Linear Embedding and fMRI feature selection for psychiatric classification)

description: Centres of Biomedical Research Excellence (COBRE) dataset used in this study (it is larger than what we used).
DOI: 10.17632/jbydk2kvd5
title: Data for: Diagnosis of quality management systems using data analytics – a case study in the manufacturing sector

description: Contains: transformed raw data, analyses on transformed data, and time series charts of the transformed data
DOI: 10.6084/m9.figshare.1126401.v1
title: Disease mention annotations in pubtator format

description: This is a collection of disease-mention corpora generated through crowdsourcing. K indicates the number of votes per annotation included. lower K is higher recall, higher K is higher precision. The best mix is at K = 6.
DOI: 10.6084/m9.figshare.21822066.v1
title: Modeling the Morphological Responses of the Yellow River Delta to the Water-Sediment Regulation Scheme (WSRS): The Role of Impulsive River Floods and Density-driven Flows

description: (1) Observed data for model validation (2) Modeling results (river boundary conditions, topography, SSC, salinity, sediment fraction)
DOI: 10.6084/m9.figshare.7098575.v1
title: Tables matching genes across mouse and human

description: Tables matching genes across mouse and human extracted from ENSEMBL. Allow for matching between genes and their paralogs between mouse and human.
DOI: 10.17632/tm8z3hsvbp
title: Behavioral and Environmental Sensing and Intervention for Dementia Caregiver Empowerment

description: Summary: This dataset includes: (1) time-series data of the ambient environment in houses with person-with-dementia (PWD), (2) three-axis accelerometer time-series data of PWD living at home, and (3) dementia caregiver assessment of PWD behavior/agitation information. 

Description: Behavioral and Environmental Sensing and Intervention study (BESI) is an experimental, prospective study on community-dwelling person-with-dementia (PWD) and caregiver dyads residing in their own homes. PWDs suffer from memory loss, cognitive, visual, and vocal impairments. These symptoms progressively worsen over time and patients often express agitated behaviors. Agitation in dementia is described as a set of either repetitious behaviors like pacing, verbal repetition, etc., or socially inappropriate and aggressive behaviors such as verbal outbursts or hitting. Caring for a PWD can be physically and emotionally taxing for caregivers. The objective of this study is to detect and predict agitation at an early stage and to notify the caregiver with personalized interventions to prevent escalation. The study aims to empower caregivers, reduce burden, and increase self-efficacy by providing just-in-time interventions.

The BESI system is deployed in houses with PWD and CG dyads and generates behavioral and environmental data using the system components. The BESI system consists of smart-watches (Pebbles) as wearables (collecting PWD behavioral data), in-home environmental sensors (collecting room-level environmental data), and user interfacing devices collecting CG’s inputs. These parameters can be combined to extract contextual agitation stimuli such as changes in the environment. Pebble continuously senses the wrist and arm movement patterns of the patient. These data contain 3-axis (x,y, and z-axis) components of acceleration of the wearer’s motion that can be used to extract important features related to physical agitation behavior. The room-level environmental sensors collect light-level (lux), room temperature (°C), relative humidity (%), air-pressure (Pa), and audio features. These environmental data are stored as time-series data. Lastly, the user interfacing devices (a tablet, and a Pebble smart-watch) collect CG inputs. The CG inputs are agitation timestamps, agitation event information, recent PWD activity, PWD mood, and CG mood. These CG inputs are stored as comma-separated-values (CSV) files.

The detailed description of this dataset can be found in the readme file below.
DOI: 10.6084/m9.figshare.16825306.v1
title: uptake plots Gltph replicate 1

description: Linking function to global and local dynamics in an elevator-type transporter
DOI: 10.6084/m9.figshare.24242854.v1
title: Data & Scripts for Fig. 2A and Fig. S2

description: Growth of bacterial leaf colonizers in leaf extract medium
DOI: 10.6084/m9.figshare.27926595.v1
title: Auckland Urban Liveability Index - manually downloaded/cleaned data

description: We present the Auckland Urban Liveability Index (AULI), an indicator that quantifies modern liveability at the neighbourhood level in Auckland. The index comprises 29 variables spanning several components of liveability: social infrastructure, green space, transportation, safety and diversity. Each is documented transparently with accompanying data and code. We find that neighbourhoods with the highest liveability scores have comparatively good public transport provision and are amenable to active travel, reflecting the principles of modern urban densification. Through local modelling frameworks, we provide useful context on the generalisability of index components that supports the transfer of our index to other cities in New Zealand and re-evaluation of our index in light of new data.
DOI: 10.6084/m9.figshare.1593036.v2
title: The Effects of Buckthorn Invasive Species on Native Maple Leaf Sapling Plants

description: The duration of the collection of these observations was about 2.5 hours. The group of 5 members was split into two smaller groups, to make the task of observing, collecting, and recording data more efficient. One smaller group had 2 individuals, while the other group had 3 individuals. The group members' names are: Ratiba, Huda, Farkhanda, Olivia, and Reena. The weather conditions at the time of the collection of observations as mentioned in the metadata, were as follows: cool, but sunny, involved rustling of leaves, (on a scale of 0-3, an average of 1, with 3 indicative of a great deal of leaf rustle) no rain, warm, partly cloudy, windy, and dispersed seeds. The majority of the quadrat regions contained significantly more Buckthorn invasive plant species than others, while some quadrats contained more maple leaf saplings. This is most likely due to the fact that in those regions, there were more minerals, nutrients, and sunlight in these areas, thus yielding more of one type of species. The observations, (20 stations), were collected over the course of approximately 5 hours, over two weeks (classes), and quite consistently throughout. The trends, although not all of the time, generally and typically show a 2:1 ratio of Buckthorn invasive plant species, to the native Maple leaf sapling plants.
DOI: 10.6084/m9.figshare.7729514.v1
title: Context-induced renewal of Pavlovian conditioned approach for alcohol and sucrose

description: Dataset for a paper published in Frontiers in Behavioral Neuroscience.<br>
DOI: 10.6084/m9.figshare.12141147.v1
title: Syntermes grandis soldiers and workers raw spectral measures

description: Spectroscopic raw data of 363 individual termites of 6 colonies in two castes in*dpt format.<br>
DOI: 10.6084/m9.figshare.24728073.v1
title: Collection of example datasets used for the book - <b><i>R Programming - Statistical Data Analysis in Research</i></b>

description: This book is written for statisticians, data analysts, programmers, researchers, teachers, students, professionals, and general consumers on how to perform different types of statistical data analysis for research purposes using the R programming language. R is an open-source software and object-oriented programming language with a development environment (IDE) called RStudio for computing statistics and graphical displays through data manipulation, modelling, and calculation. R packages and supported libraries provides a wide range of functions for programming and analyzing of data. Unlike many of the existing statistical softwares, R has the added benefit of allowing the users to write more efficient codes by using command-line scripting and vectors. It has several built-in functions and libraries that are extensible and allows the users to define their own (customized) functions on how they expect the program to behave while handling the data, which can also be stored in the simple object system.For all intents and purposes, this book serves as both textbook and manual for R statistics particularly in academic research, data analytics, and computer programming targeted to help inform and guide the work of the R users or statisticians. It provides information about different types of statistical data analysis and methods, and the best scenarios for use of each case in R. It gives a hands-on step-by-step practical guide on how to identify and conduct the different parametric and non-parametric procedures. This includes a description of the different conditions or assumptions that are necessary for performing the various statistical methods or tests, and how to understand the results of the methods. The book also covers the different data formats and sources, and how to test for reliability and validity of the available datasets. Different research experiments, case scenarios and examples are explained in this book. It is the first book to provide a comprehensive description and step-by-step practical hands-on guide to carrying out the different types of statistical analysis in R particularly for research purposes with examples. Ranging from how to import and store datasets in R as Objects, how to code and call the methods or functions for manipulating the datasets or objects, factorization, and vectorization, to better reasoning, interpretation, and storage of the results for future use, and graphical visualizations and representations. Thus, congruence of Statistics and Computer programming for Research.
DOI: 10.6084/m9.figshare.5128249.v1
title: Supplementary Material for: A Randomized Comparative Study of Oral Corticosteroid Minipulse and Low-Dose Oral Methotrexate in the Treatment of Unstable Vitiligo

description: <b><i>Background:</i></b> Despite continued progress towards elucidation of the biochemical, genetic and immunopathological pathways in vitiligo, a definitive cure remains elusive. The initial therapy must be directed to arrest disease progression. Oral minipulse therapy (OMP) with betamethasone/dexamethasone has been tried and shown to be an effective modality to arrest the disease progression in vitiligo. <b><i>Objectives:</i></b> Methotrexate (MTX) is a time-tested effective treatment extensively used in various autoimmune disorders with good efficacy, safety and tolerability on a long-term basis. We intended to compare the efficacy of MTX with that of OMP in patients with unstable vitiligo vulgaris. <b><i>Patients and Methods:</i></b> In a prospective randomized open label study, 52 patients with vitiligo were divided into two groups. Patients in group 1 received 10 mg methotrexate weekly. Group 2 patients received corticosteroid OMP which comprised tablets of dexamethasone 2.5 mg (5 tablets), taken on 2 consecutive days in a week (total weekly dose of 5 mg dexamethasone). <b><i>Results:</i></b> In the MTX group, among 25 patients analyzed, during the course of treatment for 24 weeks, overall 6 patients developed new vitiliginous lesions. In the OMP group, 7/25 patients developed new lesions. Statistical correlation between the two groups showed no significance in the number of patients who developed new lesions (increasing disease activity) in either of the groups. At the end of the study, it was demonstrated that patients in both groups had a similar reduction in the vitiligo disease activity score. <b><i>Conclusion:</i></b> Our study demonstrated that both drugs are equally effective in controlling the disease activity of vitiligo. MTX can be used in patients with active vitiligo, wherever corticosteroids are contraindicated.
DOI: 10.17632/j73dt99449
title: Data for: Medically unexplained symptoms in children and adolescents: Illness-related self-concept and parental symptom evaluations

description: Final data set for MUS in children and adolescents
DOI: 10.17632/pr38g8834g
title: Oeste F. and Elsworth C. 2024 Tropospheric photosensitive Climate Catalyst Aerosols (CCAs) for climate cooling

description: Since preindustrial times methane‘s atmospheric concentration has roughly tripled, so that it now contributes around 40% of the current energy imbalance causing global warming (Forster et al, 2023, Hansen et al, 2023). Methane has an instantaneous global warming potential per unit mass of 120x that of CO2, and globally there are millions of methane sources. However, it is not cost-effective to plug or otherwise remove all these sources, nor is it practical to capture methane from major sources such as wetlands or rice paddies. Methane currently has an average lifetime of around 9-10 years, and we propose shortening that by enhancing its natural sink using climate catalyst aerosols.
As a highly inert volatile organic compound (VOC), methane is removed naturally from the air only by a process initiated by oxidative chemical radicals. These are mainly the hydroxyl radical (°OH), and the chlorine radical (°Cl). Depending on humidity, °Cl initiates methane oxidation at least 16x faster than °OH (Oeste et al, 2017). The atmosphere’s oxidative capacity (AOC) constituted by these radicals (i.e. methane sink) is increasingly consumed by VOC emissions and other sources such as carbon monoxide from wild-fires, agricultural slash and burn, and vehicle and industrial emissions. A future hydrogen economy will consume the AOC further, because H2 is a chemical reductant (i.e. reacts with oxidants). H2 is also a greenhouse gas with a global warming potential at least 8 times that of CO2 (Derwent 2023).
DOI: 10.6084/m9.figshare.14265350.v1
title: AEM Data

description: AEM Data from Figure 6 and Supplemental Figures 7-9
DOI: 10.6084/m9.figshare.21667103.v1
title: Supplemental: Buildings in refugee camp boundaries

description: Building footprint data derived from OpenStreetMap. It is contained within the boundaries of refugee camps and IDP used in the study.
DOI: 10.6084/m9.figshare.5117788.v1
title: Raw data from Ant queens increase their reproductive efforts after pathogen infection

description: Egg laying rates and infection loads of C. obscurior queens
DOI: 10.6084/m9.figshare.5778165.v1
title: Bayesian PTSD-Trajectory Analysis with Informed Priors Based on a Systematic Literature Search and Expert Elicitation

description: There is a recent increase in interest of Bayesian analysis. However, little effort has been made thus far to directly incorporate background knowledge via the prior distribution into the analyses. This process might be especially useful in the context of latent growth mixture modeling when one or more of the latent groups are expected to be relatively small due to what we refer to as <i>limited data</i>. We argue that the use of Bayesian statistics has great advantages in limited data situations, but only if background knowledge can be incorporated into the analysis via prior distributions. We highlight these advantages through a data set including patients with burn injuries and analyze trajectories of posttraumatic stress symptoms using the Bayesian framework following the steps of the WAMBS-checklist. In the included example, we illustrate how to obtain background information using previous literature based on a systematic literature search and by using expert knowledge. Finally, we show how to translate this knowledge into prior distributions and we illustrate the importance of conducting a prior sensitivity analysis. Although our example is from the trauma field, the techniques we illustrate can be applied to any field.
DOI: 10.6084/m9.figshare.7717640.v2
title: Data from: Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics. Oikos

description: This is the data related with the manuscript "Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics", submitted to Oikos.<br>The files include code of the analysis and figures. This code was created by Orlando Acevedo-Charry, based in several "bloggers" and resource online, and with the encouragement of Zuania Colon and advise of Mitch Aide. Thank you so much!! There are 16 scripts for different analysis-figures. For each script there is included the packages used. Each script will run with the file "MainData.csv", but the "figure script" run with the results of the bootstraps (csv). Have fun!<br>
DOI: 10.17632/2dk8bnnr2j
title: Data for: Easy pre/post-processing of finite elements with custom symbolic-objects: A self-expressive Python interface.

description: This data includes the entire code-base for the examples specified in the associated article. The reader can refer to the "README" file for installation instructions.
DOI: 10.17632/3vpkvxsyb9
title: Data for: Intelligent optimization of concrete mix proportion based on big data

description: The data set includes the raw data of mix proportion test and the fitting prediction results of support vector machine.
DOI: 10.17632/6rnjw37dcg
title: Reference Norms of Non-Equilibrium Coordination Tests Among Healthy College Students: An Observational Study

description: Coordination is an essential component of neurological examination if it lacks individual suffer with impaired balance. Coordination can be assessing through Equilibrium and Non-equilibrium test. The Heel on shin test (HTS) and Drawing a figure of eight with lower extremity test (D_FO8_LE) is reliable and valid test measures to asses coordination. But there is a dearth in literature regarding the normative values of HTS and D_FO8_LL among college going students aged between 20-25 years. To establish the normative reference values of the HTS and D_FO8_LE among healthy college students. A sample of 110 college students were recruited to participate in the study. Their Coordination was assessed using the HTS and D_FO8_LE, which typically involves limb movement in synchronize manner with eyes open or closed. The participants were asked to be supine lying to perform “HTS and D_FO8_LE” with eyes open and close each side alternatively with both the limbs three readings was noted with both eyes open and close three values each were noted for both the tests which were done with eyes close and eye open first with right limb and then left limb in both tests. This study recruited 57.27% males and 42.73% females. The normative reference values for HTS and D_FO8_LE was expressed in Geometric Mean, Mean ± SD. The normative reference values for HTS(EOR) was 2.36 (2.37 ± 0.17) seconds, the normative reference values for HTS(ECR) was 2.34 (2.34 ± 0.16) seconds, for HTS(EOL) was 2.42 (2.42 ± 0.18) seconds and, for HTS(ECL) was 2.39 (2.40 ± 0.18) seconds, for D_FO8_LE(EOR) was 3.35 (3.37 ± 0.36) seconds, for D_FO8_LE(ECR) was 3.37 (3.39 ± 0.35) seconds, for D_FO8_LE(EOL) was 3.43 (3.45 ± 0.33) seconds, for D_FO8_LE(ECL) was 3.43 (3.45 ± 0.33) seconds. This study established the normative reference values for age group 20-25 years among health college students. This suggested that while HTS and D_FO8_LE emerged as a reliable measure in some contexts, further investigation and refinement may be needed to improve its consistency across all aspects of the tests.MM