cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.926799
title: Age versus two relative paleointensity proxies (slopes of NRM/ARM and NRM/IRM) for u-channel samples from Core MD07-3077 recovered during Marion Dufresne cruise VT90/SOUC

description: Two relative paleointensity (RPI) proxies (slopes of NRM/ARM and NRM/IRM) from u-channel samples from Core MD07-3077. The RPI proxies were determined from stepwise alternating field demagnetization applied to the natural remanent magnetization (NRM) and to the anhysteretic remanent magnetization (ARM) (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.
DOI: 10.1594/pangaea.922135
title: Deep-water temperatures from the Southern Ocean during HS4

description: Foraminiferal magnesium to calcium ratios (Mg/Ca) are reported for two benthic species, drawn from down-core marine sediment samples obtained from the deep Southern Ocean. Samples of 4-10 individual benthic foraminifera, of the species Globobulimina affinis and/or Uvigerina sp., were oxidatively cleaned according to a standard protocol, involving clay/detrital material removal, methanol rinses, buffered oxidation of organic matter, weak acid leaching, and deionised water rinses, followed by visual inspection of the remaining calcite fragments. After dissolution, samples were analysed by inductively coupled plasma mass spectrometry (ICP-MS). The analytical internal reproducibility is better than 2%. The efficiency of cleaning to remove external contaminant phases was screened on the basis of Fe/Ca ratios, which here remain below 0.05 mmol/mol.
DOI: 10.1594/pangaea.922136
title: Spline interpolated deep-water temperatures from the Southern Ocean during HS4

description: Spline interpolated benthic foraminifer Mg/Ca based deep-water temperatures from sediment core MD07-3076Q.
DOI: 10.1594/pangaea.958181
title: Magnetic susceptibility of sediment core MD12-3396Cq
DOI: 10.1594/pangaea.958182
title: Mineralogical properties of sediment core MD12-3396Cq
DOI: 10.1594/pangaea.803141
title: Marine atmospheric boundary layer height during SONNE cruise SO202/2 (TRANSBROM)
DOI: 10.1594/pangaea.964997
title: Contents of total carbon, inorganic carbon, organic carbon, and total nitrogen as well as Corg/Ntotal values in gravity core GeoB21367-1 from the Calabrian accretionary prism (cruise POS499)

description: A shallow sediment core GeoB21367-1 was collected with a gravity corer from the region of the Sartori Mud Volcano in the Calabrian accretionary prism during cruise POS499 with R/V POSEIDON. Site GeoB21367-1 was positioned outside the mud volcano near its northwestern rim. In order to determine C/N values (organic C/total N), as well as contents of total carbon, inorganic carbon and organic carbon, sediment samples were taken from the core with cut-off syringes and transferred into glass vials. The sediment samples were analyzed with a vario EL III elemental analyzer (Elementar Analysensysteme GmbH). Contents of organic carbon were determined after removal of inorganic carbon through acidification.
DOI: 10.1594/pangaea.965092
title: Basic and other measurements of radiation at station Ny-Ålesund (2023-12)
DOI: 10.6084/m9.figshare.25282612
title: Posterior anthropogenic emissions of CO and NOx in China before and within the COVID-19 lockdown period in 2020

description: This dataset provides the temporal averages of posterior anthropogenic emissions of CO and NOx in China as the COVID-19 period in 2020 obtained through the data assimilation that incorporated surface air quality measurements. There are two data files, which are CO.before_within_lockdown & NOx.before_within_lockdown. Each file has two time frames, corresponding to the period before the lockdown (Jan 1-20, 2020) and within the lockdown period (Jan 21 - Feb 9, 2020). This dataset was originally created by Kong et al. (2023, ACP). Please check the reference for more details.Reference:<br>Kong et al. (2023). Unbalanced emission reductions of different species and sectors in China during COVID-19 lockdown derived by multi-species surface observation assimilation, Atmospheric Chemistry and Physics, 23, 6217–6240, https://doi.org/10.5194/acp-23-6217-2023
DOI: 10.6084/m9.figshare.25282612.v1
title: Posterior anthropogenic emissions of CO and NOx in China before and within the COVID-19 lockdown period in 2020

description: This dataset provides the temporal averages of posterior anthropogenic emissions of CO and NOx in China as the COVID-19 period in 2020 obtained through the data assimilation that incorporated surface air quality measurements. There are two data files, which are CO.before_within_lockdown & NOx.before_within_lockdown. Each file has two time frames, corresponding to the period before the lockdown (Jan 1-20, 2020) and within the lockdown period (Jan 21 - Feb 9, 2020). This dataset was originally created by Kong et al. (2023, ACP). Please check the reference for more details.Reference:<br>Kong et al. (2023). Unbalanced emission reductions of different species and sectors in China during COVID-19 lockdown derived by multi-species surface observation assimilation, Atmospheric Chemistry and Physics, 23, 6217–6240, https://doi.org/10.5194/acp-23-6217-2023
DOI: 10.6084/m9.figshare.25283044
title: Supplementary Material for: Measuring objective and subjective sleep during lisdexamfetamine treatment of acute methamphetamine withdrawal: A feasibility study

description: Background: Sleep disturbance is common during methamphetamine (MA) use and withdrawal, however the feasibility of combined subjective-objective measurement of sleep-wake has not been shown in this population. Actigraphy is a well-established, non-invasive measure of sleep-wake cycles with good concordance with polysomnography. 
Objective: To investigate the feasibility and utility of using actigraphy and sleep diaries to investigate sleep during MA withdrawal. 
Method: We conducted a feasibility and utility study of actigraphy and sleep diaries during a clinical trial of lisdexamfetamine for MA withdrawal. Participants were inpatients for 7-days, wore an actigraph (Philips Actiwatch 2) and completed a modified Consensus Sleep Diary each morning. Participants were interviewed between days 3-5.
Results: 10 participants (mean age 37 years, 90% male) were enrolled. No participant removed the device prematurely. Participants interviewed (n=8) reported that the actigraph was not difficult or distracting to wear or completion of daily sleep diary onerous. Actigraphic average daily sleep duration over 7 days was 568 minutes, sleep onset latency 22.4 minutes, wake after sleep onset (WASO) 75.2 minutes and sleep efficiency 83.6%. Sleep diaries underreported daily sleep compared with actigraphy (sleep duration was 56 minutes (p=0.008) and WASO 47 minutes (p&lt;0.001) less). Overall sleep quality was 4.4 on a nine-point Likert-scale within the diary. 
Conclusions: Continuous actigraphy is feasible to measure sleep-wake in people withdrawing from MA, with low participant burden. We found important differences in self-reported and actigraphic sleep, which needs to be explored in more detail.
DOI: 10.6084/m9.figshare.25283044.v1
title: Supplementary Material for: Measuring objective and subjective sleep during lisdexamfetamine treatment of acute methamphetamine withdrawal: A feasibility study

description: Background: Sleep disturbance is common during methamphetamine (MA) use and withdrawal, however the feasibility of combined subjective-objective measurement of sleep-wake has not been shown in this population. Actigraphy is a well-established, non-invasive measure of sleep-wake cycles with good concordance with polysomnography. 
Objective: To investigate the feasibility and utility of using actigraphy and sleep diaries to investigate sleep during MA withdrawal. 
Method: We conducted a feasibility and utility study of actigraphy and sleep diaries during a clinical trial of lisdexamfetamine for MA withdrawal. Participants were inpatients for 7-days, wore an actigraph (Philips Actiwatch 2) and completed a modified Consensus Sleep Diary each morning. Participants were interviewed between days 3-5.
Results: 10 participants (mean age 37 years, 90% male) were enrolled. No participant removed the device prematurely. Participants interviewed (n=8) reported that the actigraph was not difficult or distracting to wear or completion of daily sleep diary onerous. Actigraphic average daily sleep duration over 7 days was 568 minutes, sleep onset latency 22.4 minutes, wake after sleep onset (WASO) 75.2 minutes and sleep efficiency 83.6%. Sleep diaries underreported daily sleep compared with actigraphy (sleep duration was 56 minutes (p=0.008) and WASO 47 minutes (p&lt;0.001) less). Overall sleep quality was 4.4 on a nine-point Likert-scale within the diary. 
Conclusions: Continuous actigraphy is feasible to measure sleep-wake in people withdrawing from MA, with low participant burden. We found important differences in self-reported and actigraphic sleep, which needs to be explored in more detail.
DOI: 10.6084/m9.figshare.25060043.v2
title: 同彭美玉世界的支柱之第三篇----Corporate Transformation, income inequality, and Consumer Commodity Choice: The Economic cycle in the rise and fall of Industries

description: These items are approved by python3.0 and above.Basic experiments(baseline simulation) cost time for 3h-4h.I would like to thank my future wife, Peng Meiyu, for her physical and mental support and spiritual inspiration. I wish we have a wonderful encounter.In the next life, poetic splendor awaits us.<br>
DOI: 10.5519/qd.5ulnfdrf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.25060043
title: 同彭美玉世界的支柱之第三篇----Corporate Transformation, income inequality, and Consumer Commodity Choice: The Economic cycle in the rise and fall of Industries

description: These items are approved by python3.0 and above.Basic experiments(baseline simulation) cost time for 3h-4h.I would like to thank my future wife, Peng Meiyu, for her physical and mental support and spiritual inspiration. I wish we have a wonderful encounter.In the next life, poetic splendor awaits us.<br>
DOI: 10.6084/m9.figshare.25060043.v4
title: 同彭美玉世界的支柱之第三篇----Corporate Transformation, income inequality, and Consumer Commodity Choice: The Economic cycle in the rise and fall of Industries

description: These items are approved by python3.0 and above.Basic experiments(baseline simulation) cost time for 3h-4h.I would like to thank my future wife, Peng Meiyu, for her physical and mental support and spiritual inspiration. I wish we have a wonderful encounter.In the next life, poetic splendor awaits us.<br>
DOI: 10.6084/m9.figshare.25060043.v3
title: 同彭美玉世界的支柱之第三篇----Corporate Transformation, income inequality, and Consumer Commodity Choice: The Economic cycle in the rise and fall of Industries

description: These items are approved by python3.0 and above.Basic experiments(baseline simulation) cost time for 3h-4h.I would like to thank my future wife, Peng Meiyu, for her physical and mental support and spiritual inspiration. I wish we have a wonderful encounter.In the next life, poetic splendor awaits us.<br>
DOI: 10.6084/m9.figshare.25239613
title: GNSS-IR and TDR data

description: Experimental data of apparent depth obtained by GNSS-IR and relative permittivity real part obtained by TDR.They are in Excel format and are separated by PRN name for each book.Row 1: Date and time of measurement (UTC)Rows 2 and 3: Value of relative permittivity real part obtained by TDRRow 4: Apparent depth obtained by GNSS-IR.Unit is cm.
DOI: 10.6084/m9.figshare.24630414
title: <b>Protective role of protease-activated receptor-2 in anaphylaxis model mice</b>

description: Anaphylaxis is a severe life-threatening hypersensitivity reaction induced by mast cell degranulation. Among the various mediators of mast cells, little is known about the role of tryptase. Therefore, we aimed to elucidate the role of protease-activating receptor-2 (PAR-2), a receptor activated by tryptase, in murine anaphylactic models using PAR-2-deficient mice and newly generated tryptase-deficient mice. Anaphylaxis was induced by IgE-dependent and IgE-independent mast cell degranulation in mice. PAR-2 deficiency exacerbated the decrease in body temperature and hypotension during anaphylaxis; however, the number of skin mast cells, degree of mast cell degranulation, and systemic and local vascular hyperpermeability were comparable in PAR-2 knockout and wild-type mice. Nitric oxide, which is produced by endothelial nitric oxide synthase (eNOS), is an indispensable vasodilator in anaphylaxis. In the lungs of anaphylactic mice, PAR-2 deficiency promoted eNOS expression and phosphorylation, suggesting a protective effect of PAR-2 against anaphylaxis by downregulating eNOS activation and expression. Based on the hypothesis that the ligand for PAR-2 in anaphylaxis is mast cell tryptase, tryptase-deficient mice were generated using CRISPR-Cas9. In wild-type mice, the PAR-2 antagonist exacerbated the body temperature drop due to anaphylaxis; however, the effect of the PAR-2 antagonist was abolished in tryptase-deficient mice. These results suggest that tryptase is a possible ligand of PAR-2 in anaphylaxis and that the tryptase/PAR-2 pathway attenuates the anaphylactic response in mice.
DOI: 10.6084/m9.figshare.24630414.v2
title: <b>Protective role of protease-activated receptor-2 in anaphylaxis model mice</b>

description: Anaphylaxis is a severe life-threatening hypersensitivity reaction induced by mast cell degranulation. Among the various mediators of mast cells, little is known about the role of tryptase. Therefore, we aimed to elucidate the role of protease-activating receptor-2 (PAR-2), a receptor activated by tryptase, in murine anaphylactic models using PAR-2-deficient mice and newly generated tryptase-deficient mice. Anaphylaxis was induced by IgE-dependent and IgE-independent mast cell degranulation in mice. PAR-2 deficiency exacerbated the decrease in body temperature and hypotension during anaphylaxis; however, the number of skin mast cells, degree of mast cell degranulation, and systemic and local vascular hyperpermeability were comparable in PAR-2 knockout and wild-type mice. Nitric oxide, which is produced by endothelial nitric oxide synthase (eNOS), is an indispensable vasodilator in anaphylaxis. In the lungs of anaphylactic mice, PAR-2 deficiency promoted eNOS expression and phosphorylation, suggesting a protective effect of PAR-2 against anaphylaxis by downregulating eNOS activation and expression. Based on the hypothesis that the ligand for PAR-2 in anaphylaxis is mast cell tryptase, tryptase-deficient mice were generated using CRISPR-Cas9. In wild-type mice, the PAR-2 antagonist exacerbated the body temperature drop due to anaphylaxis; however, the effect of the PAR-2 antagonist was abolished in tryptase-deficient mice. These results suggest that tryptase is a possible ligand of PAR-2 in anaphylaxis and that the tryptase/PAR-2 pathway attenuates the anaphylactic response in mice.
DOI: 10.5281/zenodo.10699747
title: data collection for ORCA2_LIM3_GEOMETRIC

description: Data output from ORCA2_LIM3_GEOMETRIC, in relation to the publication

Corrigendum to "Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scale"J. Mak, D. P. Marshall, G. Madec, and J. R. Maddison

The data here are from ORCA2 calculations with the GEOMETRIC eddy energy advection by mean flow bug fixed, following the experimental procedure reported in "Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scale". The resulting conclusions do not change; ORCA2 calculations display a larger sensitivity compared to the ORCA1 calculations it would seem (the sensitivity seems to be more to do with grid resolution, and less with fixing the bug or GEOMETRIC parameter choices).

Various folders have been split out for easier downloading.



nemo3.7-8666 contains modified NEMO GEOMETRIC code

python contains the post-processing routines, and plotting commands are given in plot_talks.ipynb. The file directory pointers are relative paths and set up for the data organisation given here in this repository

ORCA0083-N01 contains reference data from a ORCA012 calculation

ORCA2_LIM3 contains sample raw and processed data outputs, as well as restart files for re-running calculations if needed. Spinup data ending at year 1500 is in EXP_GEOM_x100/{SPINUP, RESTARTS}. Rest of the data is from year 3001 to 3100.
description: Financial support from NERC NE/R000999/1, and acknowledgements to HK RGC Early Career Scheme 2630020 as well as the Center for Ocean Research in Hong Kong and Macau. The time-stamps of the data files here are correct, unlike in ver.1 where they were off by 500 years (due to an oversight in specifying the start date).
DOI: 10.5281/zenodo.5732754
title: data collection for ORCA2_LIM3_GEOMETRIC

description: Data output from ORCA2_LIM3_GEOMETRIC, in relation to the publication

Corrigendum to "Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scale"J. Mak, D. P. Marshall, G. Madec, and J. R. Maddison

The data here are from ORCA2 calculations with the GEOMETRIC eddy energy advection by mean flow bug fixed, following the experimental procedure reported in "Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scale". The resulting conclusions do not change; ORCA2 calculations display a larger sensitivity compared to the ORCA1 calculations it would seem (the sensitivity seems to be more to do with grid resolution, and less with fixing the bug or GEOMETRIC parameter choices).

Various folders have been split out for easier downloading.



nemo3.7-8666 contains modified NEMO GEOMETRIC code

python contains the post-processing routines, and plotting commands are given in plot_talks.ipynb. The file directory pointers are relative paths and set up for the data organisation given here in this repository

ORCA0083-N01 contains reference data from a ORCA012 calculation

ORCA2_LIM3 contains sample raw and processed data outputs, as well as restart files for re-running calculations if needed. Spinup data ending at year 1500 is in EXP_GEOM_x100/{SPINUP, RESTARTS}. Rest of the data is from year 3001 to 3100.
description: Financial support from NERC NE/R000999/1, and acknowledgements to HK RGC Early Career Scheme 2630020 as well as the Center for Ocean Research in Hong Kong and Macau. The time-stamps of the data files here are correct, unlike in ver.1 where they were off by 500 years (due to an oversight in specifying the start date).
DOI: 10.5281/zenodo.5732755
title: data collection for eORCA1_LIM3_L46_GEOMETRIC

description: UPDATE [17 Oct 2023]: there is a bug in ldfeke.F90, please do not use that. A fixed version for the relevant version of NEMO can be found at https://zenodo.org/records/10699747.

=========================

Data output from eORCA1_LIM3_L46_GEOMETRIC, in relation to the publication

Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scaleJ. Mak, D. P. Marshall, G. Madec, and J. R. Maddison

See readme for more details. The code is available through the GitHub repository at https://github.com/julianmak/GEOMETRIC_code (for the article, it is the nemo3.7-8666 and ldfeke_eigen_full.F90 that you want if you are looking for full reproducibility).
description: Financial support from NERC NE/R000999/1, and acknowledgements to HK RGC Early Career Scheme 2630020 as well as the Center for Ocean Research in Hong Kong and Macau.

Minor errata: 
* [01 Dec 2021] all outputs have time-stamps that are 500 years too far ahead (e.g. time 3501-3600 really refers to time 3001-3100). This arose because of an error in the initial nn_date00 specification during the preliminary investigation that was never corrected during model integrations.
DOI: 10.5281/zenodo.10674926
title: C4B_APR
DOI: 10.5281/zenodo.10679326
title: C4B_APR
DOI: 10.5281/zenodo.10674925
title: C4B_APR
DOI: 10.5281/zenodo.10699846
title: C4B_APR
DOI: 10.15151/esrf-es-1409457070
title: NORWAY BAG

description: The fourteen PIs associated to this proposal represent the entire crystallography community in Norway and are affiliated to the major Norwegian universities. The research interests of the PIs and their collaborators revolves around topics linked to structural biology and material sciences.

We apply for beam time for single- and multi-wavelength MX, Bio-SAXS and Cryo-EM, in support of our research projects funded e.g. by the Research Council of Norway and the ERC. Examples of research projects or topics are carbohydrate-active proteins of medical or bioeconomic relevance, inhibition of DNA repair enzymes, metalloprotein function and catalysis, regulation of cell-cycle processes, enzyme discovery, antibiotic resistance/drug-discovery and neurological diseases.

Our overarching aim is to use bright synchrotron sources to produce high quality science.
DOI: 10.15151/esrf-es-1422535181
title: Heidelberg BAG (HeidelBAG)

description: The HeidelBAG unites macromolecular crystallography of EMBL Heidelberg and the Heidelberg University Biochemistry Center (BZH). Central to all projects are large assemblies involved in chromosome organization and transcription control, in nuclear and cytoplasmic RNA regulation and modification, in translational control by ribosome associated factors or further in protein targeting, membrane protein insertion or post-translational modification. While O. Barabas from EMBL has left the BAG, Svetlana Dodonova and Sebastian Eustermann at EMBL will join and add projects on chromatin organization. Nearly all projects make use of integrated structural biology techniques (MX, SAXS/SANS, NMR, cryo-EM, AI approaches) that are combined with complementary methods, a strategy that warranties the continuous success of the BAG. More and more the detailed architecture and mechanistic description of entire macromolecular machines come into focus. The BAG reports on 17 publications and 30 PDB entries.
DOI: 10.15151/esrf-es-1445118797
title: UK Midlands BAG

description: The UK Midlands BAG consists of groups located at the Universities of Birmingham, Leicester, Warwick, Nottingham, Keele, and Wolverhampton. We represent a diverse spectrum of research interests, from microbiology, cancer biology, blood disorders, immunology to fundamental biological processes such as membrane transport, DNA repair and mechanisms of enzyme catalysis. Our groups use X-ray crystallography in conjunction with other structural biology, biophysical and biochemical techniques to elucidate molecular mechanisms of protein-protein and protein-ligand interactions. Our cooperation in this block allocation group is mirrored by the consortium of institutions that are stakeholders in the Midlands Regional CryoEM Facility at the University of Leicester.