cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2639340
title: Pyridinylimidazoles as GSK3β inhibitors: the impact of tautomerism on compound activity via water networks

description: Data related to publication:

Heider et al.: Pyridinylimidazoles as GSK3β inhibitors: the impact of tautomerism on compound activity via water networks.

The files include:

1) Output conformations of the QM Tautomer & Conformation Predictor of Maestro (Schrödinger, LLC, New York, NY, 2018) of the compounds 2, 15, 16, 17, 18, 19, 20, 21, 24, 41, 42, 43, 44, 51 and 52 (.mae and .sdf files).

2) Movies of the MD simulations of compounds 15, 36, 37, 38, 41, 52 (.mpg files).

3) Raw trajectory files of the Desmond MD simulations of the compounds 15, 36, 37, 38, 41, 52 (out.cms and the full trj files)

 

<br>
DOI: 10.5281/zenodo.2639919
title: Data from the Cornell LDI Replication Lab

description: Data in this directory was compiled by participants in the Cornell LDI Replication Lab (https://www.ilr.cornell.edu/ldi). It stems from post-publication verification of computational reproducibility for several journals. "Replicators" were undergraduate research assistants, graduate research assistants, and the authors. More information is available at a TBD URL.
DOI: 10.5281/zenodo.2639920
title: Data from the Cornell LDI Replication Lab

description: Data in this directory was compiled by participants in the Cornell LDI Replication Lab (https://www.ilr.cornell.edu/ldi). It stems from post-publication verification of computational reproducibility for several journals. "Replicators" were undergraduate research assistants, graduate research assistants, and the authors. More information is available at a TBD URL.
DOI: 10.7303/syn18500212.1
title: i.syn.pancreas.zip Synthetic Mutational Spectra Based on Pancreatic Adenocarcinoma
DOI: 10.7303/syn18500213.1
title: ii. Synthetic Mutational Spectra Based on Many Cancer Types
DOI: 10.17632/2zp3zrdnxr.1
title: Data for: Deformation band formation as a function of progressive burial: depth calibration and mechanism change in the Pannonian Basin (Hungary)

description: The Excel file contains the input parameters for subsidence modelling for each of the 4 sub-area (each of them is on separate sheet). The input parameters are the age of the layer, the lithology, the thickness, the deposition and erosion intervals and the eroded thickness. The summary borehole data statistics of layer thicknesses are also indicated such as minimum, maximum, second maximum, average and the average of the highest 25%. The thickness for the input parameters for subsidence modelling is based on the average of the highest 25% of thicknesses taking into account those boreholes which are the nearest to the studied outcrops. In case of the Nógrád area, the input parameters are based on 1 borehole (Sh-16) which is the closest to the outcrops and drilled the most complete sequence of the local stratigraphy. The paleowater depth data were also indicated for each sub-area. The same paleo-heat flow data were used for each sub-area, and they are located on a separate sheet of the excel file.
DOI: 10.17632/nh5y2dddd2.1
title: Data for: Practical bioinformatic DNA-sequencing pipeline for detecting oncogene amplification and EGFRvIII mutational status in clinical glioblastoma samples
DOI: 10.5281/zenodo.2637749
title: Raw data for MSI prediction from HE

description: <strong>Network_comparison.xlsx</strong> contains raw data for the comparison of different neural network models on the tumor detection benchmark task. This is related to Extended Data Figure 1 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>TCGA_GI_Test_set_predictions.xlsx</strong> contains predicted MSIness for test set patients in TCGA-CRC-KR, TCGA-CRC-DX, TCGA-STAD. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>DACHS_predictions.xlsx</strong> contains predicted MSIness for DACHS patients. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>DACHS_MSIness_in_geneticMSS.xlsx </strong>contains MSIness raw data for genetic MSS DACHS patients. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"


in all files, each line is one patient.
DOI: 10.5281/zenodo.2637750
title: Raw data for MSI prediction from HE

description: <strong>Network_comparison.xlsx</strong> contains raw data for the comparison of different neural network models on the tumor detection benchmark task. This is related to Extended Data Figure 1 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>TCGA_GI_Test_set_predictions.xlsx</strong> contains predicted MSIness for test set patients in TCGA-CRC-KR, TCGA-CRC-DX, TCGA-STAD. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>DACHS_predictions.xlsx</strong> contains predicted MSIness for DACHS patients. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"
	<strong>DACHS_MSIness_in_geneticMSS.xlsx </strong>contains MSIness raw data for genetic MSS DACHS patients. This is related to Extended Data Figure 2 in our manuscript "Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer"


in all files, each line is one patient.
DOI: 10.17030/uclan.data.00000178
title: Theoretical grids of star spectra (A.T. Knowles thesis, UCLan).
DOI: 10.7910/dvn/xzrqmb
title: All Natural Kidney Health and Kidney Function Restoration Program

description: The All Natural Kidney Health & Kidney Function Restoration Program is the relief every kidney disease sufferer has been looking for. Despite what the doctors want you to think, going on dialysis and heavy prescription medications aren’t your only solutions, nor are they inevitable. There are various remedies that are 100% natural and that have been proven to improve kidney function and even reverse kidney disease as a whole. Since the approach is completely natural, there are no side effects that follow; just natural healing and a better quality of life. And if that’s what you’re looking for, you’ve come to the right place.The All Natural Kidney Health & Kidney Function Restoration Program is an online program that teaches you exactly what you need to do to improve your kidney function and reverse your kidney disease. It’s an incredibly comprehensive guide that covers everything from lifestyle habits to diet, natural supplements, conventional medicine and much more. Since there’s so much valuable information provided, The program is broken into seven different guides:  The Main Restoration Program The Diet Program The Definitive Guide to Potassium Content of Foods The Definitive Guide to Potassium Content of Foods Pt. 2 The Kidney Diet Grocery Shopping List The kidney Diet Tracking Sheets Vegetarian Diet for Diabetic Kidney Disease
DOI: 10.25919/5cb40cf2645e4
title: Parkes observations for project P834 semester 2018OCTS_06

description: Finding the pulsar born in SN 1987A would be of major significance. It would be by far the youngest pulsar known and would enable unique investigations of the early evolution and birth properties of a pulsar, as well as acting as a probe of the circumstellar and interstellar medium. We propose to use the new Ultra-Wideband Low (UWL) receiver to attempt confirmation of dispersed pulse candidates from previous P834 observations, to search for more isolated (giant) pulses and to continue the search for periodic emission from a pulsar associated with SN 1987A. The UWL receiver, with its much wider bandwidth and much lower system noise compared to the 10cm/50cm system will allow searches with much higher sensitivity.
DOI: 10.26066/rds.9873
title: Land Cover of Bhutan 1990

description: Land cover data of Bhutan for 1990. This dataset is created using the LandSat 30 meter spatial resolution satellite image of 1990
DOI: 10.17632/hrmkbc2w2d.1
title: Data for: Staged sediment supply from the Himalayas to the Bengal Fan in response to climate change over the past 50,000 years

description: grain size, clay minerals and Sr and Nd isotopes of the two study cores
DOI: 10.5281/zenodo.2640005
title: Retrotransposon-based genetic variation of Poa annua populations from contrasting climate conditions

description: Raw photographs of agarose electrophoresis. Material: six Poa annua populations. Method: inter-Primer Binding Site (iPBS) markers This is the documentation of studies described in the manuscript entitled "Retrotransposon-based genetic variation of Poa annua populations from contrasting climate conditions" accepted for publication in PeerJ journal (decision received on 02.04.2019)
description: n/a
DOI: 10.5281/zenodo.2589973
title: Supplementary data files for Manzano-Marín 2019 "No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa"

description: Supplementary data for Manzano-Marín 2019 "No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa".

The data in "supplementary_data.tar.gz" consists of six folders:

1) "Buchnera_GenBank_annotation”: GenBank-formatted file of the annotated genes of <em>Buchnera</em> from <em>Pentalonia nigronervosa</em> (BPn).

2) "Buchnera_gene_BLAST_search”: Tabular BLAST output files and FASTA-formatted files of the identified <em>Buchnera</em> Bpn genes.

3) "P_nigronervosa_blastx_binning”: Tabular BLAST output files and FASTA-formatted files of the <em>Buchnera</em>, <em>Wolbachia</em>, and mitochondrion bins.

4) "P_nigronervosa_BOWTIE_map_vs_bins": BAM-formatted alignment files for read libraries vs. <em>Buchnera</em> and <em>Wolbachia</em> bins from <em>Pentalonia nigronervosa</em>.

5) "P_nigronervosa_BOWTIE_map_vs_genes": BAM-formatted alignment files for read libraries vs. genes from <em>Buchnera</em> and <em>Wolbachia</em> bin from <em>Pentalonia nigronervosa</em>.

6) "P_nigronervosa_SPAdes_assembly": Output files for pooled SPAdes assembly.

Also, the filtered and trimmed FASTQ files used for genome assembly can be found in the comrpessed file "read_files_clean.tar.gz".
DOI: 10.5281/zenodo.2640004
title: Retrotransposon-based genetic variation of Poa annua populations from contrasting climate conditions

description: Raw photographs of agarose electrophoresis. Material: six Poa annua populations. Method: inter-Primer Binding Site (iPBS) markers This is the documentation of studies described in the manuscript entitled "Retrotransposon-based genetic variation of Poa annua populations from contrasting climate conditions" accepted for publication in PeerJ journal (decision received on 02.04.2019)
description: n/a
DOI: 10.21979/n9/ilqbab/9lps7d
title: List-of-References.docx

description: List of references that provided virulence information of influenza virus infections in mice.
DOI: 10.21979/n9/ilqbab/gbowmh
title: VI2VI-creation.docx

description: Description of methods and steps taken for collecting VI2VI datasets.
DOI: 10.21979/n9/ilqbab/rozxra
title: VI2VI-mice-x-virus.tab

description: Cleaned VI2VI dataset that provide virulence information of infections of a specific influenza virus strain in a specific mouse strain (redundant experiments were singled out).
DOI: 10.21979/n9/ilqbab/4dugps
title: VI2VI-raw.xlsx

description: Initial VI2VI datasets collected from literature.
DOI: 10.21979/n9/ilqbab/fgy1ip
title: genome-metadata.tab

description: Metadata of influenza virus genomes that were collected.
DOI: 10.21979/n9/ilqbab/rx95ng
title: extrapolation-genomes.tab

description: List of incomplete influenza virus genomes that were extrapolated.
DOI: 10.21979/n9/ilqbab/uzvr9f
title: VI2VI-preprocessed.xlsx

description: Preprocessed VI2VI datasets (determining the lower or upper bound for MLD50, adding the virulence classes, etc.).
DOI: 10.21979/n9/ilqbab/xqczlj
title: extrapolation-sequences.tab

description: List of partial influenza virus sequences that were extrapolated.
DOI: 10.21979/n9/ilqbab/yxqnia
title: VI2VI-virus.tab

description: Cleaned VI2VI dataset that provide virulence information of influenza viruses (mouse strains were ignored and most virulent information was considered for virulence label).
DOI: 10.14469/hpc/5473
title: xx

description: Gaussian Calculation
DOI: 10.14469/hpc/5474
title: xx

description: Gaussian Calculation
DOI: 10.14469/hpc/5475
title: xx

description: Gaussian Calculation
DOI: 10.5281/zenodo.2640501
title: Towards a Flying Assistant Paradigm: the OTHex

description: This folder contain the data relative to the bar lifting experiment presented on Staub et al. "Towards a Flying Assistant Paradigm: the OTHex". <em>IEEE 2018 International Conference on Robotics and Automation (ICRA)</em>, May 2018, Brisbane, Australia. 2018.
DOI: 10.5281/zenodo.2640502
title: Towards a Flying Assistant Paradigm: the OTHex

description: This folder contain the data relative to the bar lifting experiment presented on Staub et al. "Towards a Flying Assistant Paradigm: the OTHex". <em>IEEE 2018 International Conference on Robotics and Automation (ICRA)</em>, May 2018, Brisbane, Australia. 2018.
DOI: 10.5519/qd.9hy31bkm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/29y3rz5nt9.2
title: Ant colony system for the multi objective problems using the collective knowledge center

description: this source code proposes a dynamic parameterization approach to the ant colony optimization algorithm configuration applied to multi-objective optimization problems. Indeed, the inertia of the static vision of the pheromone or visibility preferences values makes our dynamic approach a desired approach. We propose a model based on a collective knowledge center shared by the colony members, storing the best configurations based on the old experiments of the colony during the learning phase on random problems. The construction of this center is based on a statistical and qualitative study of the evaluation criteria that will be explained over the paper. Our model gives results that show a rise in quality of the outputs, as well as a proof of concept of the artificial learning approach.
DOI: 10.17632/9mhw9yr67r.1
title: Gain of additional BIRC3 protein functions through 3′UTR-mediated protein complex formation. Lee and Mayr
DOI: 10.17632/dt9pnww8z4.2
title: Dataset for Ant colony system for the multi objective problems using the collective knowledge center

description: Dataset generated from running the ant colony system for the multi objective problems using the concept of the collective knowledge center, the four SQL dump files indicate the simulation of the ant colony tackling for a 50 random graphs of size equal respectively to 100, and 300 for the process of learning, and then tackling of the two tsp graph file euclideAB100.tsp and euclideAB300.tsp for evaluating the model performance. The learning process and the feeding of the knowledge center is done through the commitment of 110 ants subdivided into 11 groups of 10 ants. The members of the colony share a set of parameters of the MOACS algorithm, namely local and global evaporation respectively ρ, γ, fixed on the value 0.001, an exploitation value q_0= 0.9, and the maximum number of search cycles is 200 cycles.
DOI: 10.17632/548vtzjbyf.3
title: Data for: (DerainNet) Single-image Rain Removal Using Residual Deep Learning

description: a
DOI: 10.17632/82n5bjkz2c.1
title: Datos de la tesis: Modelación de la cinética de degradación de la lisina y formación de compuestos de la reacción de Maillard durante el secado por aspersión de proteínas del lactosuero obtenidas por membranas

description: Contiene los datos experimentales, modelos y códigos en Matlab y Excel necesarios para reproducir los resultados reportados en la tesis "Modelación de la cinética de degradación de la lisina y formación de compuestos de la reacción de Maillard durante el secado por aspersión de proteínas del lactosuero obtenidas por membranas" presentada para optar por el título de Doctor en Ciencias Farmacéuticas y Alimentarias de la Universidad de Antioquia.
DOI: 10.17632/82n5bjkz2c.2
title: Datos de la tesis: Modelación de la cinética de degradación de la lisina y formación de compuestos de la reacción de Maillard durante el secado por aspersión de proteínas del lactosuero obtenidas por membranas

description: Contiene los datos experimentales, modelos y códigos en Matlab y Excel necesarios para reproducir los resultados reportados en la tesis "Modelación de la cinética de degradación de la lisina y formación de compuestos de la reacción de Maillard durante el secado por aspersión de proteínas del lactosuero obtenidas por membranas" presentada para optar por el título de Doctor en Ciencias Farmacéuticas y Alimentarias de la Universidad de Antioquia.
DOI: 10.17632/m67xyxxcyb.1
title: ceo overconfidence

description: dataset for "CEO overcondence and Corporate Environmental Performances"
DOI: 10.17632/rfmf3tb5z8.1
title: An Adversarial DNA N6-methyladenine-Sensor Network Preserves Polycomb Silencing

description: The unprocessed and uncompressed imaging data (microscopy as well as gels and blots).
DOI: 10.17632/t3xr5j67fd.1
title: Calculus Video Worked Example Data

description: Summary data from a Calculus II class where students were required to watch an instructional video before or after lecture. Dataset includes gender (1=female; 2=male), vgroup (-1=before lecture; 1=after lecture), binary flag for 26 individual videos (1=watched 80% or more of length of video; 0=not watched), videosum (sum of number of videos watched), final_raw (raw grade student received on cumulative final course exam), sat_math (scaled SAT-Math score out of 800), math_place (institutional calculus readiness score out of 100), watched20 (grouping flag for students who watched 20 or more videos).
DOI: 10.17632/vznyfcx9xk.1
title: Data for: Implementation of Real-Time Online Mouse Tracking Case Study in a Small Online Quiz

description: The data are based from mouse tracking experiments at https://md.hicc.cs.kumamoto-u.ac.jp. 1. Filenames with "P2P" contains network packet captured of one click event submitted from the client to the server. The filenames also have the number of variables included such as name, email, date, current URL, etc, refer to "Summary_of_Data.ods". 2. Filename with "Local" contains resource cost and mouse tracking data of five users attempting a quiz session on the server via the Internet on 25 December 2018. 3. Filename with "Implementation" contains resource cost of a mouse tracking implementation of two quiz session attempted by twenty-two students on each session from School of Engineering and Applied Sciences, National University of Mongolia to the server at Human Interface and Cyber Communication laboratory, Kumamoto University on 03 January 2019. Unfortunately, the mouse tracking data is not open for a limited amount of time.
DOI: 10.5281/zenodo.2638159
title: Datasets for : High-resolution detection and differential expression analysis of transcription start sites using MAPCap

description: This dataset corresponds to the study: High-resolution detection and differential expression analysis of transcription start sites using MAPCap (Bhardwaj et. al. 2018)

It includes:

 - TSS identified using MAPCap in stage 15 embryos and larvae.

 - Differentially expressed TSS using MAPCap (FDR &lt; 0.05) in larvae.

 - Common and stage-specific enhancer TSS identified in this study
DOI: 10.5281/zenodo.2638160
title: Datasets for : High-resolution detection and differential expression analysis of transcription start sites using MAPCap

description: This dataset corresponds to the study: High-resolution detection and differential expression analysis of transcription start sites using MAPCap (Bhardwaj et. al. 2018)

It includes:

 - TSS identified using MAPCap in stage 15 embryos and larvae.

 - Differentially expressed TSS using MAPCap (FDR &lt; 0.05) in larvae.

 - Common and stage-specific enhancer TSS identified in this study
DOI: 10.17632/cgv9kmmym7.2
title: corporate governance and firm performance
DOI: 10.17632/ctdhwv3chw.1
title: Gadobutrol Preceeds Gd-DTPA in Contrast-enhanced MRA and MRI in Abdominal “One-stop” Imaging: A Prospective Intraindividual Comparison

description: raw data
DOI: 10.17632/hg573ttztv.1
title: MIGRATION DECISIONS AND DESTINATION CHOICES

description: Data used in a study related to migration decisions and destination choices of Nepali migrant households.
DOI: 10.17632/wy2x3fsjbc.1
title: Mediational Relationships

description: Raw data, processed data, SPSS syntax, and other miscellaneous files.
DOI: 10.17632/zgd49smpm6.1
title: Data for : Impact of Contextual and Personal Determinants on Online Social Conformity
DOI: 10.5281/zenodo.2640563
title: VOT19 Challenge RGBD

description: Dataset for the VOT19 RGBD Challenge.
DOI: 10.5281/zenodo.2640564
title: VOT19 Challenge RGBD

description: Dataset for the VOT19 RGBD Challenge.
DOI: 10.17632/27h7pf32gh.1
title: Data for: Micromixing-assisted preparation of TiO2 films from ammonium hexafluorotitanate and urea by liquid phase deposition based on simulation of mixing process in T-shaped micromixer

description: These are research data for this article.
DOI: 10.17632/3kr9dzf49c.1
title: : X-ray diffraction data to evaluate the welding residual stresses variation in welded joints under cyclic loads

description: This article presents the results for the measurement of the residual stresses by means of X-ray diffraction in butt-welded specimens subjected by cyclic loads. To do it a procedure was proposed and a study case was developed. The material studied was AISI 1018 steel. The process used to join the plates was semiautomatic welding. Residual stresses were measured at zero, 2 500, 5 000, 7 500 and 10 000 load cycles respectively. For this a diffractometer XRD; PANalytical Empyrean model was utilized to obtain a residual stresses and a MTS810 servohydraulic testing machine to mechanical test. The mechanical characterization of the joint was performed to determine the parameters of the fatigue load cycle. The residual stresses were measured before starting to apply the cyclic loads and subsequently they were measured again every 2 500 load cycles. As the main result of the application of this procedure to the joint studied, it was obtained that in the analyzed position, the residual stresses were compression and increased in absolute value with the action of the cyclic loads. For each diffractometric are showed a data of the position and the light intensity. Also are showed the incidence angle and the distance between adjacent lattice planes.
DOI: 10.17632/9wf2hhd4yf.1
title: Statistical data of a clinical study of the severity of bronchial asthma in children of the Kharkov region, 2017