cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13141334.v1
title: Supplementary Material for: Toe Web Infection: Epidemiology and Risk Factors in a Large Cohort Study

description: <b><i>Introduction:</i></b> Toe web infection (TWI) is a bacterial infection of the interdigital space. In most cases, the infection is caused by gram-negative bacteria, secondary to a chronic fungal infection (dermatophytosis). The typical presentation includes macerations and erosions in the interdigital space. Predisposing factors include interdigital tinea, hyperhidrosis, and humidity. <b><i>Objective:</i></b> The aim of this study was to characterize the TWI patient population and identify associated risk factors. <b><i>Methods:</i></b> We conducted a retrospective study of patients diagnosed with TWI from 2006 to 2020 at Sheba Medical Center, Israel. Collected data included patients’ demographics (age, sex, weight, and occupation), smoking pack-years, comorbidities, medications, and course of disease. <b><i>Results:</i></b> A total of 200 patients were diagnosed with TWI. The median age at diagnosis was 51 years. The majority of the patients were men (72.5%). The most common comorbidities were dyslipidemia, hypertension, diabetes, and ischemic heart disease. We found that 71.2% of patients were smokers, and 46.4% of patients had occupations that required closed-toe shoes. TWI incidence did not increase seasonally. Bilateral TWI was found in 50% of the patients, 33% had recurrent infections, and 20% had secondary cellulitis. <b><i>Conclusions:</i></b> Smoking and diabetes were more prevalent among TWI patients than in the general population, and there was a correlation between smoking and TWI recurrences. We identified risk factors for TWI to identify at-risk populations.
DOI: 10.6084/m9.figshare.23605371.v1
title: OT ROIs and Reference Curves

description: Optic Tract ROIs and reference curves in MNI space for use in tractometry. Still being worked on, may be updated in the future.
DOI: 10.6084/m9.figshare.26049661.v1
title: Ancestry-specific MTR scores

description: Genome-wide ancestry-specific MTR scores, accompanying publication "Diverse ancestral representation improves genetic intolerance metrics"
DOI: 10.6084/m9.figshare.28189436.v1
title: Raw data, python code, COMSOL Model for paper "Chiral resonant modes induced by intrinsic birefringence in lithium niobate metasurfaces"

description: The CSV files contain the raw data, which are used to generate Figures in the paper. LN_chiral_T.py is the python code for RCWA slover. All the transmission spectra in the paper are calculated based on LN_chiral_T.py. LN_chiral_modeanalysis.mph is a model of the COMSOL Multiphysics. The resonant frequencies and damping rates, electric field distributions, and optical chiral densities are simulated by using LN_chiral_modeanalysis.mph. <br>
DOI: 10.6084/m9.figshare.17372036.v1
title: Supplementary Material for: Mast Cell Tryptase Potentiates Neutrophil Extracellular Trap Formation

description: Previous research has indicated an intimate functional communication between mast cells (MCs) and neutrophils during inflammatory conditions, but the nature of such communication is not fully understood. Activated neutrophils are known to release DNA-containing extracellular traps (neutrophil extracellular traps [NETs]) and, based on the known ability of tryptase to interact with negatively charged polymers, we here hypothesized that tryptase might interact with NET-contained DNA and thereby regulate NET formation. In support of this, we showed that tryptase markedly enhances NET formation in phorbol myristate acetate-activated human neutrophils. Moreover, tryptase was found to bind vividly to the NETs, to cause proteolysis of core histones and to cause a reduction in the levels of citrullinated histone-3. Secretome analysis revealed that tryptase caused increased release of numerous neutrophil granule compounds, including gelatinase, lactoferrin, and myeloperoxidase. We also show that DNA can induce the tetrameric, active organization of tryptase, suggesting that NET-contained DNA can maintain tryptase activity in the extracellular milieu. In line with such a scenario, DNA-stabilized tryptase was shown to efficiently degrade numerous pro-inflammatory compounds. Finally, we showed that tryptase is associated with NET formation in vivo in a melanoma setting and that NET formation in vivo is attenuated in mice lacking tryptase expression. Altogether, these findings reveal that NET formation can be regulated by MC tryptase, thus introducing a novel mechanism of communication between MCs and neutrophils.
DOI: 10.6084/m9.figshare.26970154.v1
title: Zooplankton densities in a new pond over four hydrological years

description: Raw data associated with:Maria Anton-Pardo, Barbbara Silva Rocha, Carla Olmo, Raquel Ortells, Xavier Armengol. Succession of zooplankton in a Mediterranean pond using taxonomic and functional approaches (submitted) Data containing:Densities of zooplankton species over four hydrological years in a new interdunal pond from l'Albufera Natural Park (Valencia, Spain).
DOI: 10.6084/m9.figshare.28861835.v1
title: Mapa Conceitual da Inteligência Artificial e suas Implicações Éticas

description: Os três artigos analisam a Inteligência Artificial, mas com enfoques distintos: ética e moral, biotecnologia e mídia sonora. Enquanto um explora questões filosóficas e éticas, outro examina aspectos práticos da narrativa e o terceiro discute a relação entre IA e aprimoramento humano.
DOI: 10.6084/m9.figshare.23531004.v1
title: The 'motion' sample: Data collected from 35 information-dense linguistic descriptions

description: <b>Legend:</b>This is a conflated version of all collected variables relating to Place/Goal/Source coding plus additional information. To display finer-grained distinctions, some categories are labelled according to their functions with capitalized English terms (such as FROM, ONTO, etc.). As in the main text, Marker refers to marking on the Ground argument by an adposition, nominal affix, particle or other language-specific bound forms, whereas affix refers to verbal morphology. (Degree of) attachment to the stem is not indicated for better comparability. Element order is only specified where necessary, so that ‘plus’ does not indicate preferred element order. Spatial Interrogative refers to a dedicated form occurring in locational or motion expressions (as opposed to a general interrogative). The numbers of speakers and contact languages are taken from the descriptions so that the speaker count stems from the time of description. In the case of Lower Grand Valley Dani, the number stems from the 1996 SIL count cited in Ethnologue (http://www.ethnologue.com/18/language/dni/), and for Japhug, Jacques (2021: 1) does not specify a number.
DOI: 10.6084/m9.figshare.26549821.v1
title: Data for DIM Paper

description: Animal model of DIM exposure to understand the effects of the phytochemical on TLT formation during induced colitis, and the involvement of AhR signaling at the intestinal epithelium in the process.
DOI: 10.6084/m9.figshare.3544274.v1
title: Appendix A. A list of the studies included in our analysis.

description: A list of the studies included in our analysis.
DOI: 10.6084/m9.figshare.1136081_d182
title: Ex10R55 DAPI-7 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.12084657.v1
title: Quantum correlation dynamics in controlled two-coupled-qubit systems

description: Supplementary data from Quantum correlation dynamics in controlled two-coupled-qubit systems<br>
DOI: 10.6084/m9.figshare.24560203.v1
title: Data - Aqua notes: Miljöövervakning – Elprovfiske i trendvattendrag 2022 (Näslund & Strömberg)

description: Data used for analyses within the Swedish environmental monitoring programme for fish in rivers.Explanations for variables are found in the Excel document. References to SERS and VISS:SERS: https://www.slu.se/institutioner/akvatiska-resurser/databaser/elfiskeregistret/ (Go to Elfiskeprotokoll: Elfiskeprotokoll med instruktioner - descriptions of variables are found in PDF-document in the ownloadable zip-file)VISS: https://viss.lansstyrelsen.se/<br>
DOI: 10.15131/shef.data.25233514.v1
title: Data in support of "Design and Selection of High Entropy Alloys for Hardmetal Matrix Applications using a Coupled Machine Learning and CALPHAD Methodology"

description: Abstract: This study aimed to utilise a combined Machine Learning (ML) and CALculations of PHAse Diagrams (CALPHAD) methodology to design hardmetal matrix phases for metal forming applications that could serve as the basis for carbide reinforcement. The vast compositional space that High Entropy Alloys (HEAs) occupy, offers a promising avenue to satisfy the application design criteria of wear resistance and ductility. To efficiently explore this space, random forest ML models are constructed and trained from publicly available experimental HEA databases to make phase constitution and hardness predictions. Interrogation of the ML models constructed revealed accuracies &gt; 78.7% and mean absolute error of 66.1 HV for phase and hardness predictions. Six promising alloy compositions, extracted from the ML predictions and CALPHAD calculations, were experimentally fabricated and tested. The hardness predictions are found to be systematically under and over predicted depending on the alloy microstructure. In parallel, the phase classification models were found to lack sensitivity towards additional intermetallic phase formation. Despite the discrepancies identified between ML and experimental results, the fabricated compositions showed promise for further experimental evaluation. These discrepancies were believed to be directly associated with the available databases but importantly have highlighted several avenues for both ML and database development.
DOI: 10.6084/m9.figshare.28203218.v2
title: <b>Contrasting responses of plant diversity and soil microbial</b><b> </b><b>diversity to altered phosphorus supply</b>

description: Biodiversity underpins critical ecological processes, yet its relationship with phosphorus (P) remains poorly understood globally. In particular, it is essential to explore how plant diversity and soil microbial diversity respond distinctly to changes in P availability on a global scale. This study aims to assess the responses of global-scale plant diversity and soil microbial diversity to altered P supply using a meta-analytical technique, with 998 observations from 111 field P addition experimentsand a natural gradient analysis of foresttree diversityand vascular plant diversity.Our results showed that P additions reduced plant richness by 7.4% and the Shannon index by 2.4%, but had minor effects on soil bacterial diversity (0.9/0.2/0.2%) and fungal diversity (-1.3/2.7/1.1%) in global grasslands. P additions also had minor effects on soil bacterial and fungal diversity in forests and croplands. Natural gradient analysis showed that both forest tree richness and vascular plant richness were significantly related to soil total Pconcentration, either positively or negatively, depend on the environmental variables controlled for partial correlation analyses. These findings collectively suggest that plant diversity exhibits greater sensitivity to altered soil P availability than soil microbial diversity. Therefore, improved understanding the distinct responses of above- and below-ground biodiversity to altered nutrient supply provides a scientific foundation for implementing sound management practices of terrestrial functions and processes.
DOI: 10.6084/m9.figshare.28509584.v1
title: CalEnviro4.R

description: Data and Code to Identify Prioritization Criteria for CalEnviroScreen (Noted in Table 2, Step 6)
DOI: 10.6084/m9.figshare.5552656.v2
title: review_homoscedasticity_clinical_trials.csv

description: Data from 208 parallel clinical trials with quantitative outcome published in years 2004, 2007, 2010 and 2013. The main collected variables are: title; link to PubMed abstract; type of outcome (measured or scored); type of intervention (pharmacological or not); type of measure (automatic or assessed); if the main endpoint was significant; the standard deviations of the main outcome in both arms at the baseline and at the end of the study.<br>
DOI: 10.6084/m9.figshare.21353601.v1
title: Supplementary Material for: Predictive Value of the Hepatic Immune Predictive Index for Patients with Primary Liver Cancer Treated with Immune Checkpoint Inhibitors

description: Background: Immune checkpoint inhibitors (ICIs) have improved survival outcomes and resulted in long-term responses in primary liver cancer in some patients. However, its efficacy is limited by the risk of tumor recurrence, resulting in rapid death and graft loss if patients are not selected appropriately. Therefore, it is necessary to identify patients suitable for such therapy. Methods: 215 patients with primary liver cancer with immunotherapy were screened between August 2018 and October 2020 as a training set and our validation set were included 71 patients of hepatocellular carcinoma from Jiangxi Cancer Hospital, The Second Affiliated Hospital of Nanchang Medical College from May 2019 to July 2021. The primary endpoint was the disease control rate (DCR), and the secondary endpoints were overall survival (OS) and progression-free survival (PFS). Results: In the traing set, Neutrophil-leukocyte ratio (NLR) &gt;3, Alpha-fetoprotein (AFP) level &gt;20 ng/ml, distant metastasis at baseline, and absence of combination with targeted therapy were associated with non-DCR in the training set. Moreover, NLR &gt;3 and AFP level &gt;20 ng/ml were also independently associated with OS. Furthermore, a hepatic immune predictive index (HIPI) based on NLR &gt;3 and AFP level &gt;20 ng/mL was developed and associated with worse clinical outcomes. In validation set, HIPI was associated with overall survival. Conclusion: Baseline hepatic immune predictive index based on NLR and AFP level is an effective indicator in ICI-treated patients with primary liver cancer. Our findings may help guide the selection and on-treatment strategies for immunotherapies for primary liver cancer patients.
DOI: 10.6084/m9.figshare.15034875.v1
title: Supplementary Material for: New Reference Values for Thyroid Volume and a Comprehensive Assessment for Influencing Factors in Chinese Adults with Iodine Sufficiency

description: <b><i>Objectives:</i></b> The reference values for thyroid volume (Tvol) determined by ultrasound require supportive data of normal Tvol from local iodine-sufficient populations. This study aimed to explore new reference values for Tvol in Chinese adults and comprehensively evaluate the factors associated with enlarged Tvol. <b><i>Methods:</i></b> A cross-sectional study was conducted in Tianjin, China. Tvol was measured by ultrasound in adults with long-term iodine sufficiency. Blood and urine samples were collected to evaluate biochemical indexes, thyroid function, and iodine status. <b><i>Results:</i></b> A total of 1,991 adults from the urban and suburban areas were analysed. The trend of Tvol increasing with age was observed in men under age 40 years and in women under age 52 years. In the quantile regression analyses, we found that body surface area (BSA) (β = 7.22, 95% CI: 5.33, 9.12), thyroid-stimulating hormone (TSH) (β = −1.48, 95% CI: −2.39, −0.57), thyroid nodules (TNs) (β = 6.70, 95% CI: 2.19, 11.22), and metabolic syndrome (MetS) (β = 1.40, 95% CI: 0.63, 2.17) had a strong effect on Tvol at higher percentiles in males. The dominant factors influencing Tvol were BSA (β = 9.64, 95% CI: 2.66, 16.61), TSH (β = −0.78, 95% CI: −1.16, −0.39), and TNs (β = 1.11, 95% CI: 0.43, 1.79) in females. The largest reference values for Tvol based on BSA were 20.18 (17.79, 24.32) mL in males and 15.31 (14.05, 16.70) mL in females. <b><i>Conclusions:</i></b> Quantile regression analyses showed that a high BSA index, a decreased TSH level, and the prevalence of TNs were essential factors associated with the enlargement of the thyroid gland. Our findings reported the new reference values for Tvol determined by ultrasound based on gender and BSA in Chinese adults.
DOI: 10.6084/m9.figshare.12965096.v1
title: Raw data of data sharing

description: Raw data of data sharing policies of journals in life, health, and physical sciences indexed in Journal Citation Reports
DOI: 10.6084/m9.figshare.7609193.v2
title: CA_lidar_tree_mortality

description: These data are the product of a LiDAR based tree detection algorithm (lidR) and are described in detail in the manuscript "Tree height controls mortality rate during extreme drought." The study took place in the Sierra Nevada mountains, CA and captures the crown level mortality of 1.8+ million trees from 2009-2016.
DOI: 10.60893/figshare.jcp.28107341.v1
title: Supplementary Information

description: Details on the DFT-based partial charge calculations, partial charge distributions for the considered hBN nanopores, snapshots of the AIMD simulations demonstrating the functionalization of hBN nanopores, information about the FF used in the water desalination simulations, individual ion rejection data, analysis of the stability of MD simulations performed using the proposed force field, analysis of water permeance and salt rejection using longer simulation times
DOI: 10.6084/m9.figshare.14614065.v1
title: SVD Quartets Tree File - Bootstraps

description: SVD Quartets Tree File in newick format with bootstrap support values.
DOI: 10.6084/m9.figshare.20408100.v1
title: soil.xls

description: The minimal dataset. Full data will be made available on reasonable request
DOI: 10.6084/m9.figshare.28455434.v1
title: Native plant diversity provides resistance to invasion by an alien species in natural and experimental settings

description: Native diversity resist invasion in nature and field
DOI: 10.6084/m9.figshare.24945384.v3
title: Endosymbiont genomes from Pseudococcus viburni mealybugs

description: Genome data (in FASTA format) for the three endosymbionts found within Pseudococcus viburni mealybugs.
DOI: 10.6084/m9.figshare.16771195.v1
title: Replication data for How localised are knowledge spillovers? Evidence from microgeographic data on UK patent citations

description: These files contain the data needed to replicate "How localised are knowledge spillovers? Evidence from microgeographic data on UK patent citations" in <em>Economics of Innovation and New Technology</em> at: https://doi.org/10.1080/10438599.2023.2184809 <br> The data are described in the file README.txt
DOI: 10.6084/m9.figshare.28342634.v1
title: Supplementary Material for: Identification of Fatty Acid-Binding Protein 4 as a Potential Biomarker and Therapeutic Target for ANCA-Associated Glomerulonephritis

description: Introduction: 
Fatty acid-binding protein 4 (FABP4) is a novel adipokine that is critically involved in many inflammatory and immune diseases. However, the role of FABP4 in anti-neutrophil cytoplasmic antibody (ANCA)-associated glomerulonephritis (ANCA-GN) remains unclear. The current study aimed to investigate the role of FABP4 in patients with ANCA-GN. 
Methods: 
Plasma and urine samples from 37 patients with active ANCA-GN and kidney biopsy specimens from another group of 56 patients with ANCA-GN were collected. The plasma and urinary level of FABP4 were measured by enzyme-linked immunosorbent assay and the kidney FABP4 expression was determined by immunohistochemistry and immunofluorescence staining. Associations between FABP4 levels with clinical and pathologic parameters were analyzed. To further elucidate the role of FABP4 in ANCA-GN, a novel FABP4 inhibitor BMS309403 was employed in a recognized rat model of experimental autoimmune vasculitis (EAV).
Results: 
Plasma and urinary levels of FABP4 in active ANCA-GN patients were significantly higher than those in normal controls (52.8 ± 23.6 ng/ml vs. 16.9 ± 8.8 ng/ml, P&lt;0.01; median 126.6 [interquartile range (IQR) 28.4-311.2] ng/g Cr vs. median 0.0 [IQR 0.0-0.0] ng/g Cr, P&lt;0.01, respectively). Immunohistochemical analysis revealed higher glomerular and tubular expression of FABP4 in the kidneys of ANCA-GN patients than those in normal controls (0.015 ± 0.012 vs. 0.004 ± 0.003, P&lt;0.001; 0.053 ± 0.026 vs. 0.011 ± 0.010, P&lt;0.001, respectively). Moreover, for ANCA-GN patients, urinary FABP4 levels were significantly higher in active ANCA than those in remission (184.3 ± 187.0 ng/g Cr vs. 9.4 ± 23.9 ng/g Cr, P&lt;0.01). Correlation analysis showed that urinary levels of FABP4 correlated with serum creatinine (r=0.596, P&lt;0.0001), urinary albumin/Cr (r=0.523, P=0.001), blood neutrophil ratio (r=0.386, P=0.018), PT (r=0.583, P=0.001), APTT (r=0.364, P=0.034), hemoglobin level (r=-0.398, P=0.015), eGFR (r=-0.680, P&lt;0.0001), crescent proportion (r=0.661, P=0.032) and all-cause death of ANCA-GN patients (HR 2.93, 95%CI (1.05-8.19)). Furthermore, FABP4 inhibition by BMS309403 ameliorated renal injury in a rat mole of ANCA-GN.
Conclusions: 
Urinary FABP4 levels might reflect the disease activity and renal involvement of ANCA-associated vasculitis, and FABP4 might act as a promising therapeutic target against ANCA-GN.
DOI: 10.6084/m9.figshare.21618303.v1
title: Allele_freq_spr2014.csv.gz

description: Allele frequncy data from pool-seq of D. magna subpopulations from Finnish rock pools. Each column represents one subpopulation and each row one SNP corresponding to the XINB3 individual genome (BioProject ID: PRJNA624896). The underlying sequncing reads are accecible at GenBank (PRJNA862292).
DOI: 10.6084/m9.figshare.24796608.v1
title: Control tasks_labeling_days 2-6

description: This file consists of the time ranges for the markers present within the control tasks recorded on days 2-6 of this experiment.
DOI: 10.6084/m9.figshare.13271717.v1
title: Epigenetic signals for Enh and TssBiv states

description: H3K27ac signal for Enh states and the signal of 10 marks (H3K4me1, H3K4me2, H3K4me3m H3K9me3, H3K9ac, H3K27me3, H3K27ac, H3K36me3, ATAC, and DNAme) for TssBiv states
DOI: 10.6084/m9.figshare.19745419.v1
title: DPIA Data Wheel

description: A privacy risk assessment framework for practitioners to help support with conducting Data Protection Impact Assessments (DPIAs) and Privacy Impact Assessments (PIAs). The framework will also allow practitioners to create and maintain a GDPR compliant data register and a privacy risk register that will access risks to both the organisation (the data controller) and the individual(s) whose data is being processed (the data subject(s)). If you need any support with using this framework, do please reach out to me (jhenriksenbulmer@bournemouth.ac.uk) Thanks for showing an interest Jane Henriksen-Bulmer
DOI: 10.6084/m9.figshare.20464338.v1
title: Effects of Climate Change Knowledge on Adolescents’ Atti-tudes and Willingness to Participate in Carbon Neutrality Ed-ucation

description: Achieving carbon neutrality has become increasingly important. Therefore, it is urgent to use education to increase public understanding of carbon neutrality and facilitate low-carbon behaviors. Climate change knowledge is an effective measure to promote people’s interest and enthusiasm for specific educational projects. The present study analyzed the effects of climate change knowledge on adolescents’ attitudes and their willingness to participate in carbon neutrality education, and validated the mediating effect of environmental responsibility. The findings showed that climate change knowledge improves adolescents’ attitudes toward carbon neutrality education and that environmental responsibility plays a mediating role in this. The findings provide insightful implications for carbon neutrality-related policy making and education promotion.