cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9camswn
title: Real-time quaking-induced conversion assay data for membrane-fed ticks and wild-fed tick and deer tissues from hunter harvested white-tailed deer from Wisconsin, 2021

description: Real-time quaking induced conversion assay data from artificial membrane feeding assays of ticks and of engorged tick, ear tissue and lymph node samples from hunter harvested white-tailed deer heads from Wisconsin that were harvested during the 2021 hunting season.
DOI: 10.5066/p9kwj8w7
title: Stomach contents and consumption percentage from age-0 Scaphirhynchus sturgeon in the Missouri River, 2016

description: Diets were quantified in 282 age-0 sturgeon (15-120 mm) from four reaches of the Missouri River, none of which were pure pallid sturgeon. Prey items in the stomach were identified in the laboratory under microscope to taxonomic order and life stage (larvae, pupae, where appropriate), and counted. Consumption percentage (prey weight in the gut as a percentage of body weight) was measured to assess fullness.
DOI: 10.5066/p9b30k2l
title: Population Structure and Genetic Diversity of Eastern North American Moose

description: Hair samples were collected in discrete areas during radio-collar studies in Vermont under the auspices of University of Vermont IACUC protocol #17-035 (n=106), New Hampshire (n=34), and Maine (n=57). Hair and tissue samples were opportunistically collected from animals that were harvested, died in vehicle collisions, or translocated throughout Vermont (n = 105), Quebec (n = 198), Massachusetts (n = 5), and New York (n = 24). Of the 317 previously identified autosomal moose SNPs, 136 loci were utilized to develop a MALDI-TOF MS genotyping assay. After filtering problematic loci and individuals, genotypes from 112 of 136 SNPs (82%) were obtained for 507 individuals and all loci met Hardy-Weinberg expectations in the nine geographic regions samples.
DOI: 10.17028/rd.lboro.22657702
title: Supplementary information files for: The extent of windfarm infrastructures on recognised European blanket bogs

description: Supplementary files for article The extent of windfarm infrastructures on recognised European blanket bogs. Peatland environments are the Earth’s largest terrestrial carbon store and have the potential to act as carbon sinks. However, the development of windfarms on peatlands is affecting their morphology, hydrology, ground-level climate conditions, carbon functions and vegetation, and long-term consequences still need to be assessed. Blanket bogs are a rare type of ombrotrophic peatland that are typical of oceanic areas with high precipitation and low temperatures. Their distribution has been mapped across Europe, where they are mainly located on hill summits where wind energy potential is higher, making them attractive sites for windfarm developments. The promotion of renewable energy is currently a priority given the environmental and economic drive to increase low-carbon energy production. Establishing windfarms on peatland in pursuit of greener energy, therefore, risks compromising and undermining the green-energy transition. Despite this, the extent of windfarm infrastructures on blanket bogs have not yet been reported at the European scale. This research reports the extent of windfarm infrastructures on recognised blanket bogs, with a geographical focus on Europe, where blanket bogs have been mapped systematically. Under the EU Habitats Directive (92/43/EEC), there are 36 European regions NUTS level 2 with recognised blanket bogs. Of these, 12 have windfarm developments, including 644 wind turbines, 253.4 km of vehicular access tracks and an affected area of 207.6 ha, mainly in Ireland and Scotland where the extent of blanket bogs is also higher. However, despite Spain having under 0.2% of Europe’s recognised blanket bogs area, this was the most affected country. In Scotland, a comparison of the recognised blanket bogs under the Habitats Directive (92/43/EEC) with blanket bogs recorded in national inventories indicates that the extent of windfarm developments was higher, with 1,063 wind turbines and 634.5 km of vehicular access tracks. Our results highlight the extent of windfarm developments on blanket bog habitat, both in areas where peatlands are broadly distributed across the landscape, and also in areas where this recognised habitat is particularly rare. There is a pressing need to assess the long-term impacts of windfarms on peatlands to ensure that efforts to meet energy targets result only in carbon sequestration, and do not jeopardise ecosystem services. Blanket bogs represent a particularly vulnerable habitat, the study of which should be prioritised updating national and international inventories to protect and restore this habitat.
DOI: 10.17028/rd.lboro.22657702.v1
title: Supplementary information files for: The extent of windfarm infrastructures on recognised European blanket bogs

description: Supplementary files for article The extent of windfarm infrastructures on recognised European blanket bogs. Peatland environments are the Earth’s largest terrestrial carbon store and have the potential to act as carbon sinks. However, the development of windfarms on peatlands is affecting their morphology, hydrology, ground-level climate conditions, carbon functions and vegetation, and long-term consequences still need to be assessed. Blanket bogs are a rare type of ombrotrophic peatland that are typical of oceanic areas with high precipitation and low temperatures. Their distribution has been mapped across Europe, where they are mainly located on hill summits where wind energy potential is higher, making them attractive sites for windfarm developments. The promotion of renewable energy is currently a priority given the environmental and economic drive to increase low-carbon energy production. Establishing windfarms on peatland in pursuit of greener energy, therefore, risks compromising and undermining the green-energy transition. Despite this, the extent of windfarm infrastructures on blanket bogs have not yet been reported at the European scale. This research reports the extent of windfarm infrastructures on recognised blanket bogs, with a geographical focus on Europe, where blanket bogs have been mapped systematically. Under the EU Habitats Directive (92/43/EEC), there are 36 European regions NUTS level 2 with recognised blanket bogs. Of these, 12 have windfarm developments, including 644 wind turbines, 253.4 km of vehicular access tracks and an affected area of 207.6 ha, mainly in Ireland and Scotland where the extent of blanket bogs is also higher. However, despite Spain having under 0.2% of Europe’s recognised blanket bogs area, this was the most affected country. In Scotland, a comparison of the recognised blanket bogs under the Habitats Directive (92/43/EEC) with blanket bogs recorded in national inventories indicates that the extent of windfarm developments was higher, with 1,063 wind turbines and 634.5 km of vehicular access tracks. Our results highlight the extent of windfarm developments on blanket bog habitat, both in areas where peatlands are broadly distributed across the landscape, and also in areas where this recognised habitat is particularly rare. There is a pressing need to assess the long-term impacts of windfarms on peatlands to ensure that efforts to meet energy targets result only in carbon sequestration, and do not jeopardise ecosystem services. Blanket bogs represent a particularly vulnerable habitat, the study of which should be prioritised updating national and international inventories to protect and restore this habitat.
DOI: 10.6084/m9.figshare.22651180
title: Influenza H1N1 2009 California against Homo sapiens hg38 - Blast analysis

description: <strong>Introduction</strong> The study was performed to identify the hits of influenza virus genome against human genome hg38. In this analysis we reported the hits of Influenza H1N1 2009 California on Homo sapiens hg38 using blatsn. <strong>Methods</strong><br> <strong>Influenza H1N1 2009 California genome</strong> The genome sequence of Influenza H1N1 2009 California (2009 california) were downloaded from NCBI (https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/641809/). <strong>Blast analysis</strong> The Influenza H1N1 2009 California genome sequences were compared against of Homo sapiens hg38 downloaded from NCBI (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/) with blastn tools (2.13.0+) on a linux server, respectively. <strong>Results retrieving and sorting</strong> The hits/alignments on genome of Homo sapiens hg38 reported by the blast analysis were retrieved with customized python scripts. The regions of hits were annotated with gene information of both Influenza H1N1 2009 California and Homo sapiens hg38. 2 <strong>Results</strong> There are 262 hits reported by blast analysis between influenza H1N1 2009 California and Homo sapiens hg38 sequences.
DOI: 10.6084/m9.figshare.22651180.v1
title: Influenza H1N1 2009 California against Homo sapiens hg38 - Blast analysis

description: <strong>Introduction</strong> The study was performed to identify the hits of influenza virus genome against human genome hg38. In this analysis we reported the hits of Influenza H1N1 2009 California on Homo sapiens hg38 using blatsn. <strong>Methods</strong><br> <strong>Influenza H1N1 2009 California genome</strong> The genome sequence of Influenza H1N1 2009 California (2009 california) were downloaded from NCBI (https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/641809/). <strong>Blast analysis</strong> The Influenza H1N1 2009 California genome sequences were compared against of Homo sapiens hg38 downloaded from NCBI (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/) with blastn tools (2.13.0+) on a linux server, respectively. <strong>Results retrieving and sorting</strong> The hits/alignments on genome of Homo sapiens hg38 reported by the blast analysis were retrieved with customized python scripts. The regions of hits were annotated with gene information of both Influenza H1N1 2009 California and Homo sapiens hg38. 2 <strong>Results</strong> There are 262 hits reported by blast analysis between influenza H1N1 2009 California and Homo sapiens hg38 sequences.
DOI: 10.5066/p9qdys21
title: Isotopic Data for Fishes in Wyoming, USA

description: Trophic studies can provide valuable information on the risk an invader poses to native species. Brook Stickleback Culaea inconstans is an invasive fish species in Wyoming whose effect on native fish assemblages is poorly understood. Our goal was to understand the potential for competitive interactions between Brook Stickleback and native fishes. We used stable isotopes of carbon (?13C) and nitrogen (?15N) to evaluate the feeding ecology of Brook Stickleback relative to four native fishes. The data are appropriate for exploring whether native fish isotopic niches changed in sympatry with Brook Stickleback and to evaluate niche overlap between native fishes and Brook Stickleback. The data are associated with the manuscript: Ruthven, J.S. and A.W. Walters. In review. Invasive Brook Stickleback Culaea inconstans minimally alters the trophic ecology of four native fishes in Wyoming, USA. Food Webs.
DOI: 10.5066/p9vn4dfk
title: Local demographic rates and Critical Thermal Maximum (CTMax) values of four Eleutherodactylus frogs in Puerto Rico, 2021-2022

description: We determined the critical thermal maximum (CTMax) of six species of Eleutherodactylus frogs (Eleutherodactylus antillensis, Eleutherodactylus brittoni, Eleutherodactylus cochranae, Eleutherodactylus coqui, Eleutherodactylus juanariveroi, Eleutherodactylus wightmanae) to understand their response to warming temperatures. Data consist of capture history, body condition, and temperature at which the frog exhibited spasms and erratic behavior, which may impair predator avoidance. Our results underscored the potential vulnerability of Eleutherodactylus species exhibiting lower CTMax to the forecasted warming of tropical zones (e.g., E. wightmanae, E. brittoni).
DOI: 10.5066/p9u429yg
title: Population genetic analysis of three aquatic macroinvertebrate species from samples in Grand Canyon (Arizona, USA) tributaries and nearby reference streams, 2016-2021

description: This dataset contains single nucleotide polymorphism (SNP) information for aquatic insect species collected in tributaries of the Colorado River in Grand Canyon (Arizona, USA), as well as SNP information for individuals collected from reference reaches of the Upper Colorado River Basin in Utah. This dataset focuses specifically on three species that were common and widely distributed throughout tributary streams in Grand Canyon: a mayfly (Fallceon quilleri), a caddisfly (Hydrospyche oslari), and a water strider (Rhagovelia distincta).
DOI: 10.5066/p9shgsob
title: Seed germination requirements and seed responses to salinity for three rare wetland plants of spring-fed arid systems at Bitter Lake National Wildlife Refuge near Roswell, New Mexico 2018-2020

description: Data includes seed germination experiments observations from seeds collected during the fall of 2018 and 2020 at Bitter Lake National Wildlife Refuge, near Roswell, New Mexico. Seeds of Cirsium wrightii, Agalinis calycina, and Helianthus paradoxus were collected by manually clipping seed heads from plants across the wetland management units. Seeds were placed in brown paper bags and transported to the lab. In the lab, seeds from 2018 were immediately used for experiments by placing them in an incubator using petri dishes. Seeds collected in 2020 received cold stratification and salinity treatments. Following cold stratification, seeds were placed in the incubator and received salinity treatments. Seeds were monitored for germination.
DOI: 10.5066/p9yh2u8d
title: Movement Data of Partially Migratory Brown Pelicans from the South Atlantic Bight

description: This dataset contains locations acquired from GPS-tagged Brown Pelicans in the South Atlantic Bight. Locations correspond to the movements of pelicans tracked during the autumn migratory period (post-breed to the following spring, with length of deployment varying individually) from 2017-2020. Additional metrics include intrinsic and extrinsic variables both measured and acquired which may influence migration.
DOI: 10.5066/p9ydmomh
title: Pre- and post-White-nose Syndrome Bat Capture Models

description: These data are the collection of generalized linear mixed models run for AIC comparison of the pre- and post-White-nose Syndrome bat mist-net captures and percent juveniles in capture by year, time since White-nose Syndrome at collection set, U.S Fish and Wildlife Service designated geographic units, states or NABAT grid cell, collection site mean temperature, collection site temperature range and collection site elevation. Models are inclusive of data from 1999-2019 for the little brown bat (Myotis lucifugus), northern long-eared bat (Myotis septentrionalis) and the tri-colored bat (Perimyotis subflavus).
DOI: 10.5066/p9l2athv
title: Stream Temperature and Dissolved Oxygen Responses to Small Dams and Dam Removal in Massachusetts

description: Small, surface-release dams are ubiquitous across the U.S. and have the potential to alter stream flow, impede sediment and nutrient transport, and fragment biotic assemblages. To mitigate these and other ecological impacts and reduce public safety hazards, dam removal has become an increasingly prevalent method of stream restoration. However, few streams have been consistently monitored before and after dam removal, and there is a need for more information regarding how dam removals affect stream ecosystems across different dam, stream, and watershed characteristics. The presented data aimed to quantify the effects of dams and dam removals on two critical water quality parameters (stream temperature and dissolved oxygen) across 16 Massachusetts streams with completed (10 sites) or upcoming dam removals. This data release provides daily temperature and dissolved oxygen data before and up to 5 years after removal in upstream, downstream, and impounded or formerly impounded reaches.
DOI: 10.5066/p9r9w2jm
title: Data on Zerene silverspot butterfly and early blue violet responses to herbicide treatments from 2018-2019 greenhouse experiments

description: Herbicide treatments were applied to Zerene silverspot (Speyeria = Argynnis zerene zerene) post-diapause larvae and early blue violets (Viola adunca), the larval host plant of the Zerene silverspot butterfly, in two greenhouse experiments in 2018-2019. Treatments included distilled water for untreated (U), Agri-Dex (A), Nu Film IR (N), clopyralid (C), clopyralid with Agri-Dex (CA), clopyralid with Nu Film IR (CN), fluazifop-p-butyl (F), fluazifop-p-butyl with Agri-Dex (FA), and fluazifop-p-butyl with Nu Film IR (FN). Zerene silverspot responses measured in the 2018 experiment included larval and pupal survival, sex ratio, larval and pupal development time, pupal and adult mass, adult morphology, female fecundity, and offspring survival and development time. In the 2019 experiment, the recorded response was displayed oviposition behavior of untreated Zerene silverspot females on early blue violets treated with U, CA, and CN. Host plants were also measured for their carbon and nitrogen contents. An additional experiment in 2019 recorded the adult mass of females that were either reared on early blue violets in competition with false dandelions (Hypochaeris radicata) and tall fescues (Festuca arundinacea) or without competition when they were post-diapause larvae.
DOI: 10.5066/p9tka3l8
title: Ungulate Migrations of the Western United States, Volume 2

description: This is the data archive for the publication Ungulate Migrations of the Western United States, Volume 2 (Kauffman et al. 2022) and includes the collection of GIS map files that are mapped and described in the report. These map files are meant to provide a common spatial representation of the mapped migrations. This data release provides the means for ungulate migrations to be mapped and planned for across a wide variety of landscapes where they occur. Due to data sharing constraints of participating agencies, not all the files that underlie the mapped migrations included in the report have been released. Data can be viewed at: https://westernmigrations.net. Data in this archive can be downloaded two ways. To download by individual herd/range, clicking on child item pages and a zip shapefile archive is available. A single complete zip file archive of all the files is also provided below in the 'Files' section.
DOI: 10.5066/p9z0w4ik
title: Fish movement and colonization in the Wyoming Range 2018-2019

description: Fish colonization ability may be one factor affecting population resilience after disturbance. We conducted displacement experiments in headwater streams in Wyoming, U.S.A. to evaluate mottled sculpin (Cottus bairdii) and mountain sucker (Catostomus platyrhynchus) colonization ability. Specifically, we (1) determined if fish could colonize sites rapidly after displacement, (2) evaluated site-level factors affecting colonization, and (3) compared species-level differences in movement and colonization capabilities. For the colonization experiment, we removed fish from 31 experimental 100 m reaches to create an experimental displacement and examined short-term colonization dynamics in relation to initial fish abundance and habitat characteristics in 2018 and 2019. We selected four additional sites during 2018 to conduct a movement study and compare species mobility in the absence of experimental displacement. We calculated movement distances for all fish relocations, which included short-distance movements within short (200-meter) PIT tag resurveys and recaptures from long-distance surveys at the four movement sites, as well as six incidental recaptures during fish monitoring efforts across the entire study system.
DOI: 10.2908/road_go_ta_tott
title: Summary of annual road freight transport by type of operation and type of transport (1 000 t, Mio Tkm, Mio Veh-km)
title: Récapitulatif du transport routier annuel par type d'opération et type de transport (1 000 t, Mio Tkm, Mio Veh-km)
title: Zusammengefasster jährlicher Straßengüterverkehr nach der Art des Einsatzes und der Verkehrsart (1 000 t, Mio. Veh-km)
DOI: 10.5066/p9t541ml
title: Sample locations 2022 SARS-CoV-2 testing in little brown bats

description: The potential introduction of SARS-CoV-2, the virus responsible for the COVID-19 pandemic, into North American bat populations is of interest to wildlife managers due to recent declines of several species. Populations of little brown bats (Myotis lucifugus) have collapsed due to white-nose syndrome (WNS), a disease caused by the introduction and spread of the fungal pathogen Pseudogymnoascus destructans (Pd). Throughout much of the United States and southern Canada, large colonies of the species routinely established diurnal roosts in anthropogenic structures creating the potential for direct human contact and cross-species disease transmission. Given recent declines and the potential for further disease impacts, we collected oral swabs from eight little brown bat colonies for RT-qPCR analysis to describe the presence and prevalence of SARS-CoV-2. We visited colonies in Maryland (n = 1), New Hampshire (n = 1), New Jersey (n = 2), New York (n = 1), Rhode Island (n = 2), and Virginia (n = 1) during May-August, 2022. We have analyzed samples from 235 individuals and all have tested negative for SARS-CoV-2. Our results indicate that little brown bats are either negative for SARS-CoV-2 or that it persists in undetectable levels in populations of the Mid-Atlantic and Northeast in the summer months. Nonetheless, future work addressing other seasons or using serologic approaches may still be warranted to conclusively determine disease status.
DOI: 10.4121/9a9bdb35-8f65-41f1-be00-4d247722ad48
title: Supporting data for Simulating horizontal crustal motions of GIA using compressible cartesian models

description: This dataset includes input files for the Abaqus models, and the horizontal output data of the ICEAGE runs for the paper titled 'Simulating horizontal crustal motions of glacial isostatic adjustment using compressible cartesian models'. It also contains output data for the FastLove-HiDeg and AFCAL models that were used for the supplementary material of the paper.
DOI: 10.4121/9a9bdb35-8f65-41f1-be00-4d247722ad48.v1
title: Supporting data for Simulating horizontal crustal motions of GIA using compressible cartesian models

description: This dataset includes input files for the Abaqus models, and the horizontal output data of the ICEAGE runs for the paper titled 'Simulating horizontal crustal motions of glacial isostatic adjustment using compressible cartesian models'. It also contains output data for the FastLove-HiDeg and AFCAL models that were used for the supplementary material of the paper.
DOI: 10.5281/zenodo.7845709
title: Human CD34 bone marrow SCE data set to reproduce Totem protocols

description: The data set <code>human_cd34_bm_rep1.rds</code> was parsed with the R script <code>download_h5ad_to_SCE_rds_script.R</code> (see github repository elolab/Totem-protocol). It is a parsed <code>SingleCellExperiment</code> <code>RDS</code> object corresponding to the anndata h5ad <code>human_cd34_bm_rep1.h5ad</code> available on HCA Portal and published by Setty et al., 2019.
DOI: 10.5281/zenodo.7845708
title: Human CD34 bone marrow SCE data set to reproduce Totem protocols

description: The data set <code>human_cd34_bm_rep1.rds</code> was parsed with the R script <code>download_h5ad_to_SCE_rds_script.R</code> (see github repository elolab/Totem-protocol). It is a parsed <code>SingleCellExperiment</code> <code>RDS</code> object corresponding to the anndata h5ad <code>human_cd34_bm_rep1.h5ad</code> available on HCA Portal and published by Setty et al., 2019.