cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c2b53/1
title: Behavioural dataset (RFID recordings) with full description

description: Full experimental dataset. The structure of the data is described in detail in the ReadMe file (also included in the archive as "Data set description.pdf")
DOI: 10.5061/dryad.cf033/1
title: Mass and growth measurements for wild meerkats across five lifestages
DOI: 10.5061/dryad.g9117
title: Data from: Molecular phylogenetic reconstruction of the endemic Asian salamander family Hynobiidae (Amphibia, Caudata).
DOI: 10.5061/dryad.hd5c7/1
title: Allozyme data

description: Allelic variation scored from nine presumptive loci. In addition to genotypes, host and geographical locality data are provided for each acanthocephalan.
DOI: 10.5061/dryad.hd5c7/2
title: Egg and acanthor dimensions for Echinorhynchus gadi spp.

description: Egg and acanthor dimensions for Echinorhynchus gadi spp. A, B & I. All dimensions in micrometres.
DOI: 10.5061/dryad.hd5c7/3
title: Morphometric and meristic data for female Echinorhynchus gadi spp.

description: Morphometric and meristic data for female Echinorhynchus gadi spp. A, B & I. All measurements in micrometres.
DOI: 10.5061/dryad.hd5c7/4
title: Morphometric and meristic data for male Echinorhynchus gadi spp.

description: Morphometric and meristic data for male Echinorhynchus gadi spp. A & B. All measurements in micrometres.
DOI: 10.5061/dryad.hd5c7/5
title: Hook measurements for Echinorhynchus gadi spp.

description: Hook measurements for female and male Echinorhynchus spp.
DOI: 10.5061/dryad.m3c53/1
title: Kovach_geneticdata

description: These data were used in various combinations for the analyses in "Genetic change for earlier migration timing in a pink salmon population."  The first sheet includes the microsatellite data, which are in GENEPOP format.  The next 8 sheets are the data for the experimental genetic allozyme marker MdH.  The last sheet are the daily allele counts for the "control" allozyme locus AGP.  See additional details within the data.
DOI: 10.5061/dryad.mb0cd1bs/1
title: FITNESS_estimation
DOI: 10.5061/dryad.mb0cd1bs/2
title: LNS_phenotypes
DOI: 10.5061/dryad.n06g2/1
title: Adult data

description: Adult tree genotype and GPS data
DOI: 10.5061/dryad.n06g2/2
title: Progeny data

description: Progeny genotype data
DOI: 10.5061/dryad.n65k2/2
title: Ephydra_packardi_read-pair_set2

description: A gzip file containing one of two fastq files associated with the data set. Each gzip file contains a large FASTQ sequence file. Files contain congruent sequences from the paired-end run. For example, the first entry from file set 1 contains the first half of the read pair, while the first entry from file set 2 contains the second half of the read pair. There are 9015656 sequences in each file, and each sequence uses 4 lines in the file (consistent with the FASTQ format). These data can be used to reproduce the "Benchmarking and Code Performance" section of the manuscript associated with this Dryad submission.
DOI: 10.5061/dryad.q414b/1
title: Trachylepis_alignment_partition_scheme_P5

description: Interleaved alignment of all genes in Nexus format, with exclusion settings and partition scheme (P5) as used in the partitioned Bayesian analysis.
DOI: 10.5061/dryad.r4sj0/1
title: DryadData
DOI: 10.5061/dryad.rp131/1
title: X. birchmanni life history data

description: Life history data from samples collected from wild populations of sheepshead swordtail, X. birchmanni, in Hidalgo, Mexico.  NAs indicate missing data.Embryo staging was based on the methods described in Reznick DN, Endler JA. (1982) Evolution 86: 160-177, which in turn were based on the PhD thesis of SC Stearns. The embryo stage codes are as follows:VEE: Very early eyedEE: Early eyedLE: Late eyedVLE: Very late eyeVY: Vitellogenic yolk
DOI: 10.5061/dryad.s17s3d5r/1
title: DataBase

description: Ecological and genotype data of adults and seeds in the Castanopsis cuspidata population.
DOI: 10.5061/dryad.tk2jk/1
title: N availability in soils from Stipa tenacissima grasslands along an aridity gradient in the Mediterranean

description: Data on N availability in soils from Stipa tenacissima grasslands along a Mediterranean aridity gradient (from Spain to Tunisia). The database also includes information about other soil, plant and abiotic variables of the sites surveyed. All the units and information about the variables are included in the "Metadata" spreadsheet.
DOI: 10.5061/dryad.tm723/1
title: Studies

description: Information about studies included in the meta-analysis, including the Study ID used in the files containing data on moonlight effects
DOI: 10.5061/dryad.tm723/2
title: Species

description: Taxonomic and life history information about species included in the study, including a Species ID used in the files with moonlight response data
DOI: 10.5061/dryad.tm723/3
title: Giving up density data

description: This table contains data from studies that conducted giving-up density experiments. Predator treatment indicates whether predators were present, absent, or whether predator treatments were pooled. Habitat indicates whether habitat was open, cover, pooled (both), or "simulated" (experiments conducted indoors where artificial habitat was not described; these were excluded from our analyses). Initial seed weight is the amount of seed offered to rodents in grams, and GUD bright and dark are the amounts of seed remaining after foraging trials on full moon and new moon nights, respectively.
DOI: 10.5061/dryad.tm723/4
title: Responses of mammals to moonlight

description: This file contains data on the response of nocturnal mammals to moonlight. Zr is Fisher's z-transformation of correlation coefficients (r), which was used as the measure of effect size in the meta-analysis. Negative values indicate that moonlight suppressed activity and positive values indicate that moonlight increased activity. "Dendf" = Denominator degrees of freedom. Response type is the type of response to moonlight reported in the study. GUD = giving-up density, activity = time spent active, hunting = time spent hunting, capture/sight = number of sightings or captures, habitat shift = change in habitat use, predation = change in predation rate (negative = higher predation rate with moonlight). Preferred cover: 1=open, 1.5= open/bush, 2=grass, 2.5= open/forest or grass/bush, 3=bush, 3.5=bush/forest, 4=forest.
DOI: 10.5061/dryad.v21bb/1
title: SqrlStrikeFactors.4withstrikeoutcome&dodge

description: Field data of free-ranging rattlesnake strike behaviour in response to ground squirrel tail-flagging displays.
DOI: 10.5061/dryad.v21bb/2
title: SnakeHuntingDataCoxSurvUpdated3

description: Field data of free-ranging rattlesnake ambush site selection behaviours in response to tail-flagging displays from ground squirrels.
DOI: 10.5061/dryad.v7q42/1
title: Alignments

description: Sequence alignments analyzed in the study. 11 anlyzed DNA regions: accD, ITS, matK, nad5 intron, rbcL, rpoA, rpoB, rpoC1, rpoC2, trnH-psbA, trnL-trnF
DOI: 10.5061/dryad.v84jr/1
title: Murella_dryad
DOI: 10.5061/dryad.v84jr/2
title: HAPLO

description: Haplotypes for all the individuals are given.
DOI: 10.5061/dryad.1nt11/2
title: Perl script to filter reads by start and end primer sequences

description: A Perl script to filter 454 reads by the start and end primer sequence. Input reads are in fasta format. Outputs several files for reads that match the primers, and reads that are too short or too long, or don't match.
DOI: 10.5061/dryad.1nt11/3
title: Perl script to count unique sequences

description: Script to count unique sequences from fast input file, reverse complementing if necessary so forward primer is at start of the sequence.
DOI: 10.5061/dryad.1nt11/4
title: README

description: This Readme file gives details about the initial submission of manuscript to arXiv.org, before it subsequently accepted by the Journal of Evolutionary Biology.
DOI: 10.5061/dryad.3bv1h/1
title: Genotypes_starlings_DRYAD

description: Microsatellites genotypes and mitochondrial haplotypes description of Sturnus vulgaris in South Africa and United Kingdom
DOI: 10.5061/dryad.3bv1h/2
title: haplo-genbank

description: Genbank accession number for each haplotype
DOI: 10.5061/dryad.43cj7/1
title: Model video

description: a video of one model realization
DOI: 10.5061/dryad.43cj7/4
title: Reprising boundary condition data
DOI: 10.5061/dryad.43cj7/5
title: Stopping boundary condition data
DOI: 10.5061/dryad.43cj7/6
title: Reprising boundary condition data (replicate dataset)
DOI: 10.5061/dryad.43cj7/7
title: R script to produce fitted GAMs from the datasets
DOI: 10.5061/dryad.43cj7/8
title: A readme file describing the files in this archive
DOI: 10.5061/dryad.4p41m/2
title: Genotypes_data

description: The file Genotypes_data.zip contains two folders: Simulated_genotypes, Simulated_genotypes_subpopulations and one .csv file named Microtus_oeconomus_genotypes.csv
DOI: 10.5061/dryad.6g92f/1
title: Sequential choice within species

description: Differences in preference measures of female sticklebacks (benthics and limnetics) for two males seen 120 minutes apart.  Differences calculated as second male minus first male.  Difference in red throat coloration between males also included.  Data collected in laboratory no-choice mate trials.  Column headings in ReadMe file.
DOI: 10.5061/dryad.6g92f/2
title: Effect of experience on conspecific preference

description: Preference of female sticklebacks for conspecific and heterospecific males in first and second trials (two entries per female).  Data collected in laboratory no-choice mate trials.  Column headings in ReadMe file.
DOI: 10.5061/dryad.6g92f/3
title: Conspecific mate preference in second trials

description: Female stickleback preference for conspecific and heterospecific males in only second trials (120 minutes after first trial). Data collected in laboratory no-choice mating trials. Column headings in ReadMe file.
DOI: 10.5061/dryad.6g92f/4
title: Aggression and preference

description: Female preference of sticklebacks in second trials based on male aggressive behavior (bites, chases) towards female in first trial.  Data collected in laboratory no-choice mate trials.  Column headings in ReadMe file.
DOI: 10.5061/dryad.80md2d10/1
title: Genotype_Raw_Data

description: File: Genotype_Raw_data | Data collected by Lemer S.: sarah.lemer@gmail.com | Description of Data file | 1st column : individuals sampled in each populations. Individual names are composed of the 3 or 4 first letter of the sampled site followed by sample number. Population names are code as in Table 1 in the article. | 2nd to 21st column : individual genotype per locus. Alleles are reported for each locus in two columns. Locus are named as in Table A in the Supporting materials. | Alleles are reported in base pair. Missing data is indicated with the following sign '?'.
DOI: 10.5061/dryad.99db2/1
title: Locality, isotope, genetic and morphological data
DOI: 10.5061/dryad.c6g84/1
title: ASCO_FASTAS_ALIGNED_58S_OPTSIL

description: Alignment of 5.8S sequences corresponding to ascomycetes used in clustering analysis by OPTSIL.
DOI: 10.5061/dryad.c6g84/2
title: BASID_FASTAS_ALIGNED_58S_OPTSIL

description: Alignment of 5.8S sequences corresponding to basidiomycetes used in clustering analysis by OPTSIL. File is in FASTA format.
DOI: 10.5061/dryad.c6g84/3
title: TUL_ML56_ALN

description: Alignment of mitochondrial large subunit ribosomal DNA used in both clustering analysis by OPTSIL and phylogenetic analysis. The file is in FASTA format.
DOI: 10.5061/dryad.c6g84/4
title: Sebacinales_58s

description: Alignment of Sebacinales 5.8S used for inferring phylogeny. The file is in phylip format.
DOI: 10.5061/dryad.c6g84/5
title: Sebacinales_ITS

description: Alignment of Sebacinales sequences spanning ITS1-5.8S-ITS2 used in analysis of molecular diversity. The file is in FASTA format.
DOI: 10.5061/dryad.c6g84/6
title: Sebacinales_tree

description: The tree file for the Sebacinales phylogeny in analysis of phylogenetic variation. The file is in newick format.
DOI: 10.5061/dryad.c8m2k/1
title: Gorgonia ventalina microsatellite genotype data

description: Structure format
DOI: 10.5061/dryad.c8m2k/2
title: Geographic distance matrix by locality

description: ***README:  This is a matrix of pairwise geographic distances between all sampling localities used in the manuscript entitled "Range-wide population genetic structure of the Caribbean sea fan coral, Gorgonia ventalina" by Andras JP, Rypien KL, & Harvell CD published in Molecular Ecology in 2012.  The first row and first column contain locality numbers, which are in the same order as the localities in Table 1 of the corresponding manuscript.  All other cells contain pairwise distances in kilometers.  The matrix is symmetrical, meaning the values are identical across the diagonal.  Please direct any questions regarding these data to Jason Andras at jpa24@cornell.edu.
DOI: 10.5061/dryad.c8m2k/3
title: Average annual dispersal probability by region

description: ***README:  This is a matrix of pairwise dispersal probabiliteis between sampling regions used in the manuscript entitled "Range-wide population genetic structure of the Caribbean sea fan coral, Gorgonia ventalina" by Andras JP, Rypien KL, & Harvell CD, published in Molecular Ecology in 2012.  The first first column contains the region name.  The second column contains the localities averaged within that region (locality numbers correspond to Table 1 of the manuscript).  Column three and the top row contain the numerical designation for each region.  All other cells contain pairwise annual average dispersal probabilities between regions, given as [log(dispersal probability +1)].  The matrix is asymmetrical, meaning the values are not identical across the diagonal.  To compare this matrix to measures of genetic distance, bidirectional dispersal probabilites can be averaged to generate a lower triangular matrix, or the asymmetric matrix below can be compared to a full-square symmetric matrix of genetic distances.  Please direct any questions regarding these data to Jason Andras at jpa24@cornell.edu.
DOI: 10.5061/dryad.d3t16pd2/1
title: Unique mtDNA haplotypes (n=73)

description: Nexus file containing the sequences (949 bp) of the 73 unique ND5 mtDNA haplotypes discovered among 1128 bobcat samples. Also included in the file is the sequence "lynx" that was used as an outgroup (Canada lynx, Genbank accession AY598481).
DOI: 10.5061/dryad.d3t16pd2/2
title: Individual mtDNA sequences (n=1128)

description: Nexus file containing the 949 bp mtDNA ND5 sequences for each of the 1128 bobcat samples analyzed. Sequence name corresponds to the sample ID.
DOI: 10.5061/dryad.d3t16pd2/3
title: Microsatellite and Spatial Coordinate Data (n=1702)

description: Tab-delimited file containing microsatellite data, spatial coordinates, and other information for 1702 bobcat samples used in this study.
DOI: 10.5061/dryad.d3t16pd2/4
title: TableS2

description: Summary of mtDNA and microsatellite genetic variation for 52 a priori "sample groups". Note that this table also appears as an Excel file in online supplementary information associated with this article in Molecular Ecology.
DOI: 10.5061/dryad.dd550/1
title: Calothamnus quadrifidus ssp. teretifolius population  diversity data

description: File containing 160 Calothamnus quadrifidus subspecies teretifolius individuals sampled from eight populations and scored at 9 microsatellite loci.  The genotypes  are in a format suitable for the program GENEPOP 4.1 (Rousset, 2008).
DOI: 10.5061/dryad.dd550/2
title: T adult genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from T population and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.dd550/3
title: T progeny genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius progeny in family groups sampled from T population and scored at 6 microsatellite loci.  Mother numbers refer to individuals in the file T adult genotypes.txt
DOI: 10.5061/dryad.dd550/4
title: H adult genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from H population and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.gv4n5
title: Data from: Extinction cascades partially estimate herbivore losses in a complete Lepidoptera-plant food web
DOI: 10.5061/dryad.r3gr75qs/3
title: Eriocaulon madayiparense Figure
DOI: 10.5061/dryad.r3gr75qs/4
title: Eriocaulon madayiparense Type specimen
DOI: 10.5061/dryad.v84jr/3
title: Morphological data

description: Morphological data are given for all the individuals. Please, refer to the paper for codes.
DOI: 10.5061/dryad.09760/1
title: Yellowthroat_MHC_data

description: Data on major histocompatibility complex (MHC) gene variation in pairs of common yellowthroats. Data from Saukville, Wisconsin. See Readme file.
DOI: 10.5061/dryad.338tf52k/1
title: 20120318_Allozyme_data

description: Please see the ReadMe file. The file 20120318_Allozyme_data conatins the allozyme data for this manuscript in text format. Archival locations for other data are described in the ReadMe file.
DOI: 10.5061/dryad.38h06/1
title: Physiological and morphological measurements of Dryopteris ferns

description: This Excel file contains data collected in the field for eleven species of Dryopteris ferns in eastern North America. Physiological and morphological data include canopy transmittance, gas exchange parameters (Amax, Amax-mass, R, Rmass, k, LCP, ICP, gs), specific leaf area (SLA), stomatal densities, frond and plant narrowness (based on length or height and width measurements), and angles of frond inclination. Data for individual plants are given, along with means and standard errors reported in the manuscript.
DOI: 10.5061/dryad.43cj7/2
title: Absorbing boundary condition data
DOI: 10.5061/dryad.43cj7/3
title: Reflecting boundary condition data
DOI: 10.5061/dryad.73v17/1
title: Yann et al Paleobiology supplementary documents

description: Tables of stable isotope data and additional statistics
DOI: 10.5061/dryad.8c134/1
title: Alignment of group-specific primer set regions

description: Sequence alignment of DNA regions targeted by the four group-specific primer pairs amplifying Bird, Invertebrate and Plant (mitochondrial and chloroplastic) DNA. Target and non target species were aligned for each group-specific primer pair. Target species were chosen to be as much as possible divergent in order to highlight the potentiality of each primer pair to amplify a wide prey diversity. "N" represents unavailable nucleotide in the existing Genbank sequence, "-" indicates gap and nucleotides between brackets indicate insertions. Note that because Animals do not have chloraplastic DNA, only sequences from target species were aligned for the Plant chloroplastic primer pair.
DOI: 10.5061/dryad.8c1d0/1
title: caullerya_ITS_alignment
DOI: 10.5061/dryad.8sd03/1
title: Woods_Figure_2_data

description: File created in Microsoft Excel. See readme.txt for details.
DOI: 10.5061/dryad.c2pd5/1
title: Escolar_PTRSB_2011_0344R1

description: This zip file contains a series of tab-delimited text files containing data on the cover, richness, diversity, evenness and Fv/Fm data of the whole biological soil crust community, as well as on the cover of mosses, lichens and the two dominant lichen species in the study area (Squamarina lentigera and Diploschistes diacapsis). See materials and methods in the main text for all the details.
DOI: 10.5061/dryad.c6g84/10
title: Tulasnellaceae_ML

description: Alignment of Tulasnellaceae mitochondrial large subunit (mtLSU) used for inferring the phylogeny. The data file is in PHYLIP format.
DOI: 10.5061/dryad.c6g84/11
title: Tulasnellaceae_MLtree

description: The tree file for the phylogeny of the Tulasnellaceae mitochondrial large subunit of rDNA (mtLSU). The file is in newick format.
DOI: 10.5061/dryad.c6g84/7
title: Tulasnellaceae_tree

description: The tree file for the Tulasnellaceae phylogeny in analysis of phylogenetic variation. The file is in newick format.
DOI: 10.5061/dryad.c6g84/8
title: Tulasnellaceae_58s

description: Alignment of Tulasnellaceae 5.8S used for inferring the phylogeny. The file is in PHYLIP format.
DOI: 10.5061/dryad.c6g84/9
title: Tulasnellaceae_ITS

description: Alignment of Tulasnellaceae sequences spanning ITS1-5.8S-ITS2 used in analysis of molecular variation. The alignment is in FASTA format.
DOI: 10.5061/dryad.c8qq7/1
title: 13-0130.R2

description: Data on F1 generation of inbreeding and outbreeding crossings. Collected under semi-natural conditions. Data files were created using windows 7 in excel.
DOI: 10.5061/dryad.dd550/10
title: O and N background

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from O and N populations and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.dd550/5
title: H progeny genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius progeny in family groups sampled from H population and scored at 6 microsatellite loci.  Mother numbers refer to individuals in the file H adult genotypes.txt
DOI: 10.5061/dryad.dd550/6
title: D adult genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from D population and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.dd550/7
title: D progeny genotypes

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from D population and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.dd550/8
title: B, D, AM background

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from B, D, and AM populations and scored at 6 microsatellite loci.
DOI: 10.5061/dryad.dd550/9
title: H, AM, B background

description: File containing Calothamnus quadrifidus subspecies teretifolius adult individuals sampled from H, AM, and B populations and scored at 6 microsatellite
DOI: 10.5061/dryad.ds388/1
title: Individual tracking histories raptors, including details on mortality

description: Raptor birds were tracked by satellite telemetry (see main text for details and references). In this file, we provide an overview of tracking histories of individual birds, which formed the basis for our analysis on spatiotemporal patterns in mortality. Every row represents one individual. We provide tracking history which includes date animal was tagged, date tracking was terminated, classification for termination. Ospreys returning with non-functional transmitters were recaptured and fitted with new transmitters, hence they occasionally have two tracking histories. We also provide number of seasons and months survived.
DOI: 10.5061/dryad.fq613m13/1
title: Female Choice Data

description: Data from the female choice portion of the experiment
DOI: 10.5061/dryad.fq613m13/2
title: Male Comp Data

description: Data for Male Choice/Competition portion of experiment
DOI: 10.5061/dryad.fq613m13/3
title: Intrinsic Isolation Raw Data

description: Data used to estimate strength of intrinsic isolation
DOI: 10.5061/dryad.gk7nh/1
title: Genotype_Raw_Data_Mourier_and_Planes_2012
DOI: 10.5061/dryad.gm2p8/1
title: Stuart_etal_dataframes.RData

description: This R workspace image contains two dataframes, one for anoles and one for terraranans. Each data frame contains pairwise environmental dissimilarity and species turnover values for island and mainland sub regions. The columns are: | geo_dist: geographic distance between sampling areas | climelev.pc.dist: environmental distance between sampling areas from a pca on environmental variables and elevation | log.area.diff: the difference in log area between sampling areas | sor: Sorensen's index of species turnover | jac: jaccard's index | comp.type: Identifies measures as mainland-mainland (m.m), mainland-island (i.m), or island-island (i.i) | comp.nums: identifies the corresponding sampling areas, which are mapped in the accompanying ArcGIS grids in the Stuart_etal_sample_areas.zip file