cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20530702
title: Evaluating associations between trauma-related characteristics and functional recovery in individuals with spinal cord injury

description: To determine the associations between trauma variables, acute phase-related variables, and patient-level characteristics with functional recovery during inpatient rehabilitation for individuals with spinal cord injury (SCI). The associations were evaluated by linking individuals’ records between the Pennsylvania Trauma Systems Outcomes Study and the National SCI Model Systems databases. Retrospective cohort analysis. Two SCI Model Centers in Pennsylvania, United States. We used a record linkage toolkit in Python to link 735 individuals with traumatic SCI between the databases. The percentage for true-match and error were 92.0% and 0.1%, respectively. The functional recovery during inpatient rehabilitation was determined in 604 individuals with SCI by ordinary least squares regression (OLS) and gradient boosting regression (GBR) analyses. The OLS and GBR analyses indicated older age, greater impairment (SCI level combined with American Spinal Injury Association impairment scale), presence of diabetes mellitus, pulmonary complications during acute care, and longer length of stay at an inpatient rehabilitation facility were associated with lower functional recovery (OLS <i>R</i><sup>2 </sup>= 0.56 and GBR <i>R</i><sup>2 </sup>= 0.58). Trauma and acute care variables in addition to patient characteristics were associated with functional recovery during inpatient rehabilitation in individuals with SCI. Further investigation is needed to understand the role of diabetes mellitus and pulmonary complications, which have not been previously associated with functional recovery in individuals with SCI.
DOI: 10.6084/m9.figshare.22677546
title: Retinal Sublayer Analysis in Autoimmune Retinopathy and Identification of New Optical Coherence Tomography Phenotypes

description: Autoimmune retinopathy (AIR) is a poorly characterized disease with a wide phenotypic spectrum, complicating investigations of its underlying pathophysiology. We sought to analyze optical coherence tomography (OCT) retinal thickness changes in AIR patients. A retrospective chart review from 2007 to 2017 was performed evaluating AIR patients at a single academic, tertiary referral center. OCT retinal sublayer analysis was performed, and paradoxical thickening phenotypes were reviewed. Twenty-nine AIR patients with positive anti-retinal antibodies and OCT imaging were identified. Overall, AIR patients had thinner retinal sublayers compared to controls; however, 12 patients (41.4%) had paradoxical thickening of the outer plexiform layer (OPL). This revealed two distinct OCT phenotypes. No association was found between retinal sublayer thickness and specific antiretinal antibodies. While the pathogenicity of antiretinal antibodies remains unclear, the OCT phenotypes observed underscore the potential for identifying clues in the underlying disease processes and clinical diagnosis.
DOI: 10.6084/m9.figshare.20530702.v1
title: Evaluating associations between trauma-related characteristics and functional recovery in individuals with spinal cord injury

description: To determine the associations between trauma variables, acute phase-related variables, and patient-level characteristics with functional recovery during inpatient rehabilitation for individuals with spinal cord injury (SCI). The associations were evaluated by linking individuals’ records between the Pennsylvania Trauma Systems Outcomes Study and the National SCI Model Systems databases. Retrospective cohort analysis. Two SCI Model Centers in Pennsylvania, United States. We used a record linkage toolkit in Python to link 735 individuals with traumatic SCI between the databases. The percentage for true-match and error were 92.0% and 0.1%, respectively. The functional recovery during inpatient rehabilitation was determined in 604 individuals with SCI by ordinary least squares regression (OLS) and gradient boosting regression (GBR) analyses. The OLS and GBR analyses indicated older age, greater impairment (SCI level combined with American Spinal Injury Association impairment scale), presence of diabetes mellitus, pulmonary complications during acute care, and longer length of stay at an inpatient rehabilitation facility were associated with lower functional recovery (OLS <i>R</i><sup>2 </sup>= 0.56 and GBR <i>R</i><sup>2 </sup>= 0.58). Trauma and acute care variables in addition to patient characteristics were associated with functional recovery during inpatient rehabilitation in individuals with SCI. Further investigation is needed to understand the role of diabetes mellitus and pulmonary complications, which have not been previously associated with functional recovery in individuals with SCI.
DOI: 10.6084/m9.figshare.22677546.v1
title: Retinal Sublayer Analysis in Autoimmune Retinopathy and Identification of New Optical Coherence Tomography Phenotypes

description: Autoimmune retinopathy (AIR) is a poorly characterized disease with a wide phenotypic spectrum, complicating investigations of its underlying pathophysiology. We sought to analyze optical coherence tomography (OCT) retinal thickness changes in AIR patients. A retrospective chart review from 2007 to 2017 was performed evaluating AIR patients at a single academic, tertiary referral center. OCT retinal sublayer analysis was performed, and paradoxical thickening phenotypes were reviewed. Twenty-nine AIR patients with positive anti-retinal antibodies and OCT imaging were identified. Overall, AIR patients had thinner retinal sublayers compared to controls; however, 12 patients (41.4%) had paradoxical thickening of the outer plexiform layer (OPL). This revealed two distinct OCT phenotypes. No association was found between retinal sublayer thickness and specific antiretinal antibodies. While the pathogenicity of antiretinal antibodies remains unclear, the OCT phenotypes observed underscore the potential for identifying clues in the underlying disease processes and clinical diagnosis.
DOI: 10.6084/m9.figshare.22354045.v1
title: Theory- and evidence-based best practices for physical activity counseling for adults with spinal cord injury

description: This project used a systematic and integrated knowledge translation (IKT) approach to co-create theory- and evidence-based best practices for physical activity counseling for adults with spinal cord injury (SCI). Guided by the IKT Guiding Principles, we meaningfully engaged research users throughout this project. A systematic approach was used. An international, multidisciplinary expert panel (<i>n</i> = 15), including SCI researchers, counselors, and people with SCI, was established. Panel members participated in two online meetings to discuss the best practices by drawing upon new knowledge regarding counselor-client interactions, current evidence, and members’ own experiences. We used concepts from key literature on SCI-specific physical activity counseling and health behavior change theories. An external group of experts completed an online survey to test the clarity, usability and appropriateness of the best practices. The best practices document includes an introduction, the best practices, things to keep in mind, and a glossary. Best practices focused on how to deliver a conversation and what to discuss during a conversation. Examples include: build rapport, use a client-centred approach following the spirit of motivational interviewing, understand your client’s physical activity barriers, and share the SCI physical activity guidelines. External experts (<i>n</i> = 25) rated the best practices on average as clear, useful, and appropriate. We present the first systematically co-developed theory- and evidence-based best practices for SCI physical activity counseling. The implementation of the best practices will be supported by developing training modules. These new best practices can contribute to optimizing SCI physical activity counseling services across settings.
DOI: 10.7924/r4wd4323c
title: Data from: A Griffith description of fracture for non-monotonic loading with application to fatigue

description: With the fundamental objective of establishing the universality of the Griffith energy competition to describe the growth of large cracks in solids not just under monotonic but under general loading conditions, this paper puts forth a generalization of the classical Griffith energy competition in nominally elastic brittle materials to arbitrary non-monotonic quasistatic loading conditions, which include monotonic and cyclic loadings as special cases. Centered around experimental observations, the idea consists in: i) viewing the critical energy release rate Gc not as a material constant but rather as a material function of both space X and time t, ii) one that decreases in value as the loading progresses, this solely within a small region around crack fronts, with the characteristic size of such a region being material specific, and iii) with the decrease in value of Gc being dependent on the history of the elastic fields. By construction, the proposed Griffith formulation is able to describe any Paris-law behavior of the growth of large cracks in nominally elastic brittle materials for the limiting case when the loading is cyclic. For the opposite limiting case when the loading is monotonic, the formulation reduces to the classical Griffith formulation. Additional properties of the proposed formulation are illustrated via a parametric analysis and direct comparisons with representative fatigue fracture experiments on a ceramic, mortar, and PMMA.
DOI: 10.15468/dl.tux4kt
title: Occurrence Download

description: A dataset containing 995034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, Italy, Greece, Svalbard and Jan Mayen, Denmark, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Belgium, Netherlands, France, Germany, Switzerland, Austria, Türkiye, Russian Federation, Belarus, Ukraine, Romania, Bulgaria, North Macedonia, Albania, Montenegro, Serbia, Kosovo, Slovenia, Bosnia and Herzegovina, Poland, Czechia, Slovakia, Hungary)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Festuca rubra L."
 ]
}

 The dataset includes 995034 records from 1828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007320-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23j7fw
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((40.98561 30.94268, 41.07802 30.94268, 41.07802 31.01129, 40.98561 31.01129, 40.98561 30.94268))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043861-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27174750
title: PCA.xlsxDevelopment of multi-species qPCR assays for a stress transcriptional profiling (STP) Chip to assess the resilience of salmonids to changing environments

description: Ecologically and socio-economically important salmonid fishes in Canada are threatened by diverse environmental stressors. Using custom-designed nanofluidic stress transcriptional profiling chip (STP-Chip), we tested our developed 112 multi-species Taqman qPCR assays using gill, liver and muscle tissue from eight species of salmonids across four genera. Of the selected 112 assays, 69 assays showed amplification in gill, 64 in liver, and 67 in muscle across all eight salmonid species. In general, the assays performed better in <em>Salmo</em>, <em>Oncorhynchus</em>, and <em>Salvelinus</em> species than <em>Coregonus</em>species. Not surprisingly, we observed tissue-specific variation among qPCR amplification patterns. Stress, circadian rhythm, apoptosis, growth-metabolism, and detoxification-relevant assays showed high success rates for amplification across all salmonid species for all three tissues. In contrast, neural plasticity, appetite regulation, osmoregulation, immune function, endocrine disruption, and hypoxia-relevant assays showed poorer amplification, potentially due to the tissues being tested. These qPCR assays can be used to design custom STP-Chips that can be used for quantifying stress in salmonid fishes, and monitoring physiological responses to accelerated climate change regionally and globally
DOI: 10.6084/m9.figshare.27174750.v1
title: PCA.xlsxDevelopment of multi-species qPCR assays for a stress transcriptional profiling (STP) Chip to assess the resilience of salmonids to changing environments

description: Ecologically and socio-economically important salmonid fishes in Canada are threatened by diverse environmental stressors. Using custom-designed nanofluidic stress transcriptional profiling chip (STP-Chip), we tested our developed 112 multi-species Taqman qPCR assays using gill, liver and muscle tissue from eight species of salmonids across four genera. Of the selected 112 assays, 69 assays showed amplification in gill, 64 in liver, and 67 in muscle across all eight salmonid species. In general, the assays performed better in <em>Salmo</em>, <em>Oncorhynchus</em>, and <em>Salvelinus</em> species than <em>Coregonus</em>species. Not surprisingly, we observed tissue-specific variation among qPCR amplification patterns. Stress, circadian rhythm, apoptosis, growth-metabolism, and detoxification-relevant assays showed high success rates for amplification across all salmonid species for all three tissues. In contrast, neural plasticity, appetite regulation, osmoregulation, immune function, endocrine disruption, and hypoxia-relevant assays showed poorer amplification, potentially due to the tissues being tested. These qPCR assays can be used to design custom STP-Chips that can be used for quantifying stress in salmonid fishes, and monitoring physiological responses to accelerated climate change regionally and globally
DOI: 10.15468/dl.hmqatb
title: Occurrence Download

description: A dataset containing 2932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Virola surinamensis (Rol. ex Rottb.) Warb.)"
 ]
}

 The dataset includes 2932 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043862-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b7smv
title: Occurrence Download

description: A dataset containing 59545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((44.70863 41.62308, 44.93227 41.62308, 44.93227 41.81278, 44.70863 41.81278, 44.70863 41.62308))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 59545 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043863-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4j72p
title: Occurrence Download

description: A dataset containing 8146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((37.3063 -3.397588, 37.40638 -3.397588, 37.40638 -3.29238, 37.3063 -3.29238, 37.3063 -3.397588))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 8146 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043864-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btevav
title: Occurrence Download

description: A dataset containing 5570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((39.07938 21.28923, 39.39309 21.28923, 39.39309 21.72154, 39.07938 21.72154, 39.07938 21.28923))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 5570 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043865-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8mdf5
title: Occurrence Download

description: A dataset containing 7248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((37.62734 -6.848427, 37.72144 -6.848427, 37.72144 -6.743003, 37.62734 -6.743003, 37.62734 -6.848427))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 7248 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043866-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6aj3wf
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((38.42664 15.76651, 38.48794 15.76651, 38.48794 15.79934, 38.42664 15.79934, 38.42664 15.76651))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 136 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043867-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xff48j
title: Occurrence Download

description: A dataset containing 5424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((44.38428 40.08591, 44.61127 40.08591, 44.61127 40.2471, 44.38428 40.2471, 44.38428 40.08591))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 5424 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043868-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b9t97
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baskervilla auriculata Garay"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043869-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msmch9
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((43.02004 36.29314, 43.2345 36.29314, 43.2345 36.40728, 43.02004 36.40728, 43.02004 36.29314))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 70 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043870-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2u3kyc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((43.24705 35.72338, 43.33739 35.72338, 43.33739 35.81093, 43.24705 35.81093, 43.24705 35.72338))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043871-240906103802322/datasets/export for details.
DOI: 10.15468/dl.7nsm8f
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((38.86344 15.2989, 38.95999 15.2989, 38.95999 15.36451, 38.86344 15.36451, 38.86344 15.2989))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 322 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043872-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kbatw
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((39.73859 21.33908, 39.92348 21.33908, 39.92348 21.54689, 39.73859 21.54689, 39.73859 21.33908))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 360 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043873-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whdj34
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((47.92575 46.26583, 48.15302 46.26583, 48.15302 46.43324, 47.92575 46.43324, 47.92575 46.26583))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 320 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043874-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.