cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f7fq9tm9
title: U.S. Geological Survey Gap Analysis Program- Land Cover Data v2.2

description: This dataset combines the work of several different projects to create a seamless data set for the contiguous United States. Data from four regional Gap Analysis Projects and the LANDFIRE project were combined to make this dataset. In the northwestern United States (Idaho, Oregon, Montana, Washington and Wyoming) data in this map came from the Northwest Gap Analysis Project. In the southwestern United States (Colorado, Arizona, Nevada, New Mexico, and Utah) data used in this map came from the Southwest Gap Analysis Project. The data for Alabama, Florida, Georgia, Kentucky, North Carolina, South Carolina, Mississippi, Tennessee, and Virginia came from the Southeast Gap Analysis Project and the California data was generated by the updated California Gap land cover project. The Hawaii Gap Analysis project provided the data for Hawaii. In areas of the county (central U.S., Northeast, Alaska) that have not yet been covered by a regional Gap Analysis Project, data from the Landfire project was used. Similarities in the methods used by these projects made possible the combining of the data they derived into one seamless coverage. They all used multi-season satellite imagery (Landsat ETM+) from 1999-2001 in conjunction with digital elevation model (DEM) derived datasets (e.g. elevation, landform) to model natural and semi-natural vegetation. Vegetation classes were drawn from NatureServe's Ecological System Classification (Comer et al. 2003) or classes developed by the Hawaii Gap project. Additionally, all of the projects included land use classes that were employed to describe areas where natural vegetation has been altered. In many areas of the country these classes were derived from the National Land Cover Dataset (NLCD). For the majority of classes and, in most areas of the country, a decision tree classifier was used to discriminate ecological system types. In some areas of the country, more manual techniques were used to discriminate small patch systems and systems not distinguishable through topography. The data contains multiple levels of thematic detail. At the most detailed level natural vegetation is represented by NatureServe's Ecological System classification (or in Hawaii the Hawaii GAP classification). These most detailed classifications have been crosswalked to the five highest levels of the National Vegetation Classification (NVC), Class, Subclass, Formation, Division and Macrogroup. This crosswalk allows users to display and analyze the data at different levels of thematic resolution. Developed areas, or areas dominated by introduced species, timber harvest, or water are represented by other classes, collectively refered to as land use classes; these land use classes occur at each of the thematic levels. Six layer files are included in the download packages to assist the user in displaying the data at each of the Thematic levels in ArcGIS.
DOI: 10.5281/zenodo.7889693
title: Data for the paper "Two small volcanoes, one inside the other: geophysical and drilling investigation of Bažina maar in western Eger Rift"

description: Data for the paper "Two small volcanoes, one inside the other: geophysical and drilling investigation of Bažina maar in western Eger Rift" Pavla Hrubcová, Tomáš Fischer, Vladislav Rapprich, Jan Valenta, Petr Tábořík, Jan Mrlina, Torsten Dahm, Tomáš Vylita, Roman Beránek, Radek Klanica, Veronika Turjaková This repository contains following data: 1. Gravity data <br> • file: Gravity_Topo.txt (measured field data after topographic correction)<br> <br> 2. Magnetic data <br> • file: bazina_maar_magnetics.xlsx (measured field data corrected for variations)<br> • file: bazina_maar_magnetics_RTP.grd (magnetic field data reduced to pole, Golden <br> Software Surfer grid file)<br> <br> 3. Ground resistivity data using the multielectrode method (ERT data)<br> • folder: ERT_data – raw data for inversion in BERT format (https://gitlab.com/resistivity-net/bert) <br> - profiles<br> - 3d compilation<br> - ESRI ShapeFiles with coordinates<br> • folder: ERT_results – inverted results <br> - profiles<br> - 3d compilation (3d data cube)<br> The data are in VTK file format (The Visualization Toolkit)<br> Geographic coordinates used for the 3d data processing are in the S-JTSK (Krovak’s projection <br> – Cartesian coordinates used by the Czech Office for Surveying, Mapping and Cadastre)<br> <br> • file: Bazina_resistivity.xls (each sheet contains one file with data for the inversion) <br> The format is for the BERT software (https://gitlab.com/resistivity-net/bert) <br> all profiles, 3d compilation, with coordinates 4. Lithology and logging data from the two boreholes S4 and S4b <br> • file: S4_data_EN.LAS (logging data for S4 borehole)<br> • file: S4b_data_EN.LAS (logging data for S4b borehole)<br> • file: Lithology_and_Logging_S4_S4b.pdf (lithology and logging data for S4 and S4b boreholes)<br>
DOI: 10.5281/zenodo.7991206
title: Raman Data for "Coral growth persistence amidst bleaching events"

description: This dataset includes codes and data used in "Coral growth persistence amidst bleaching events" by Mantanona and DeCarlo (2023). Methods are included in the publication and supplementary material. To reproduce the analysis, run the file, "run_me.R".
DOI: 10.22002/d1.20248
title: Shear Wave Velocities in the San Gabriel and San Bernardino Basins, California

description: This dataset contains the shear wave velocity model of northern Los Angeles basins, including San Gabriel, Chino, Raymond, and San Bernardino basin. The model domain is a rectangular box, with longitude between 116.90°W and 118.37°W, latitude between 33.90°N and 34.25°N. 
Details of the files see README file.
DOI: 10.34857/0048168
title: Fall Armyworm: Impacts and Implications for Africa Data 2018

description: This dataset was collected to produce the report _Fall Armyworm:\r\nImpacts and Implications for Africa, 2018_. The data was collected via household surveys conducted in Ghana, Zambia and Zimbabwe in 2018 using the Open Data Kit (ODK) data collection tool on tablets.\r\n\r\n###Data collected includes:###\r\n* Demographics of farming households\r\n* Fall armyworm field infestation levels \r\n* Maize area affected by fall armyworm\r\n* Effect on maize yield\r\n* Current control method including gender split, pesticides used and their cost and effectiveness \r\n\r\n\r\n####Further reports used producing this data include:####\r\n* Farmer perception of fall armyworm _(Spodoptera frugiderda J.E. Smith)_ and\r\nfarm-level management practices in Zambia (Kansiime et al., 2019)
DOI: 10.5067/8ruzi1f8u1ux
title: Sounder SIPS: Suomi NPP CrIMSS Level 2 CLIMCAPS Normal Spectral Resolution: Atmosphere, cloud and surface geophysical state V1
DOI: 10.5067/atjx1j10vomu
title: Sounder SIPS: Suomi NPP CrIMSS Level 2 CLIMCAPS Full Spectral Resolution: Cloud Cleared Radiances V2
DOI: 10.5067/ke4wcxm829a3
title: Sounder SIPS: JPSS-1 CrIS Level 2 CLIMCAPS: Cloud Cleared Radiances V2
DOI: 10.5067/lesqublws18h
title: Sounder SIPS: JPSS-1 CrIS Level 2 CLIMCAPS: Atmosphere cloud and surface geophysical state V2
DOI: 10.5067/ohluj5at5m27
title: Sounder SIPS: Suomi NPP CrIMSS Level 2 CLIMCAPS Normal Spectral Resolution: Cloud Cleared Radiances V1
DOI: 10.5281/zenodo.1252009
title: Cross-Shore Observations Of Warm, Internal Tide Bores Within The Nearshore

description: Temperature and current observations near Pt. Sal, CA.
DOI: 10.5281/zenodo.7248286
title: Observed water level from 2015 to 2019 in 4 wells from a porous fractured aquifer in Burgundy, France

description: This repository hosts the data used for drawing figure 8 from Jeannot et al.(submitted). The dataset is made of observed water levels from 2015 to 2019 in 4 wells from a porous fractured aquifer in Burgundy, France. The sampling time step is 2 hours. <strong>Cited bibliography</strong> Jeannot, B., Schaper, L., and Habets, F., submitted. Water Level in Observation Wells Simulated from Fracture and Matrix Water Heads Outputed by Dual-continuum Hydrogeological Models : POWeR-FADS. <em>Water Resources research</em>
DOI: 10.5281/zenodo.7398170
title: Eco-physiological constraints of deep soil desiccation in semiarid tree plantations

description: This is a database used to describe the response of tree's eco-physiological characteristics to deep soil desiccation, mainly including 60 years of simulated soil moisture and soil temperature, model calibration and validation data sets, and simulated physiological and ecological indicators in different precipitation years.
DOI: 10.5281/zenodo.7823080
title: Brush Creek Flux Data for Publication

description: These files contain the Surface Flux and turbulence data at the Brush Creek site during the deployment of NOAA's Physical Science Laboratory deployment of the atmospheric profile systems in late 2021 and early 2022.
DOI: 10.5281/zenodo.8015913
title: Custom R scripts and input files for manuscript "Evolutionary histories of breast cancer and related clones"

description: Supporting files for manuscript <em>"Evolutionary histories of breast cancer and related clones"</em>. Contents: Custom R script and an input file (*.txt) to evaluate clonal structure of single-cell derived organoids using the Gaussian mixture models Custom R script and an input file (*.txt) to estimate mutation rate in normal organoids using the linear regression models Custom R script and input files (*.txt) to generate mutation matrices for phylogenetic analysis using MEGA and treemut Custom R scripts and an input file (*.txt) to estimate the timing of 1q gain, 1q gain doubling, and MRCA emergence
DOI: 10.5281/zenodo.8036492
title: Example meshes for 'Human brain solute transport quantified by glymphatic MRI-informed biophysics during sleep and sleep deprivation'

description: Example meshes for 'Human brain solute transport quantified by glymphatic MRI-informed biophysics during sleep and sleep deprivation' The meshes contain DTI. To read the mesh to FEniCS, see e.g., here . Find the simulation codes for the manuscript here: https://github.com/bzapf/braintransport
description: M.E. Rognes acknowledges support and funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme under grant agreement 714892, and the Research Council of Norway (RCN) via FRIPRO grant agreement 324239 (EMIx). K.-A. Mardal acknowledges support from the Research Council of Norway, Grant 300305 and 301013, and the national infrastructure for computational science in Norway, Sigma2, Grant NN9279K
DOI: 10.5439/1377836
title: skyrad60s

description: This DOI is for skyrad60s.b1 datastream
DOI: 10.5439/1377837
title: gndrad60s

description: This DOI is for gndrad60s.b1 datastream
DOI: 10.6073/pasta/03dc1f107ca816675b4983daf7a97dbe
title: Harvard Forest Climate Data since 1964

description: This dataset provides daily air temperature and precipitation data from Harvard Forest for long-term climate studies. It combines measurements from the original manual weather station (Shaler, 1964-2002, dataset HF000) with measurements from the current automated weather station (Fisher, since 2001, dataset HF001). Gaps in the Shaler data were filled using data from nearby stations. Data from a 12-month period when both stations were operational were used to adjust the Shaler data to more closely match the Fisher data. This dataset is updated annually.
DOI: 10.6073/pasta/751d60c674f8750c1d3dfaca1e78839e
title: Larrea Seedling Monitoring Study at the Sevilleta National Wildlife Refuge, New Mexico (1999- )
DOI: 10.6073/pasta/93b27926879861815ebb021bfd6f14ae
title: Plant aboveground biomass data: Long-Term Nitrogen Deposition: Population, Community, and Ecosystem Consequences

description: The purpose of this experiment is to measure how adding nitrogen over a long time will affect the number of species, the type of species present, the amount of annual growth, and the change from year to year in the growth of each species in a plant community which is also relieved of grazing by large and small mammals. The experiment is being conducted within fields (A, B, C, and D) which were initially low in soil nutrients. There are 8 different levels of nitrogen addition with other nutrients added to ensure that nitrogen remains the limiting nutrient, and a control which receives no nutrients. There are 6 replicates of the 9 treatments in fields A, B, and C and 5 replicates in field D. The treatments were randomly assigned to the plots. In fields A, B, and C the plots are in 6 by 9 grids and are 4 by 4 meters in size with 1 meter aisles between plots. In field D the plots are 1.5 by 4 meters and are placed in a 3 by 17 grid. The plots are enclosed by a fence to keep out mammalian herbivores. Gophers are trapped and removed as they appear. Nitrogenfertilizer (NH4NO3) is applied twice per year, once in early May and once in late June. This experiment was begun in 1982 by David Tilman.
DOI: 10.6073/pasta/c790bd0b1bdde870b5b1e7f631d3d38e
title: Biodiversity - Fauna - Bird Survey
DOI: 10.6073/pasta/ec88f3dd4ed8e172802b52ff3bb82aa8
title: El Verde Grid long-term invertebrate data

description: The data set consists of 41 files: (1) abundance data for the walking stick, Lamponius portoricensis, (2) estimates of abundance (Minimum Number Known Alive) for 17 species of terrestrial snails, and (3) 39 files containing data on size and mark-recapture estimates of population size for the snails Caracolus caracolla and Nenia tridens from the Wet Season of 1995 to the Wet Season of 2016 (no dry season data for 1995 or after 2012). Note: MNKA estimates are not always identical to the number of individuals indicated in the Mark-Recapture data, because some individuals (e.g., those that were lost before being marked) had to be excluded from calculations for Mark-Recapture estimates of abundance.
DOI: 10.6073/pasta/f6ecfd9d99c9cc83e47469d10b620cfb
title: SGS-LTER Long-Term Monitoring Project: Vegetation Cover on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
DOI: 10.6084/m9.figshare.21651434.v1
title: Reference Tetranychus urticae genome annotation and variant data for inbred strains MR-VPi and ROS-ITi

description: An annotation of the genome of the two-spotted spider mite, <em>Tetranychus urticae</em>, is provided. Briefly, the annotation of Wybouw <em>et al.</em> (2019, GENETICS, 211:1409-1427; doi: 10.1534/genetics.118.301803) was updated with additional gene models present in the 2019 annotation of the <em>T. urticae</em> genome available from the Online Resource for Community Annotation of Eukaryotes (ORCAE: https://bioinformatics.psb.ugent.be/orcae/). This resulted in the Tetranychus_urticae_2022_12 annotation that is provided in the GTF format. Additionally, a variant call format (VCF) file is provided for single nucleotide polymorphisms (SNPs) detected in alignments of Illumina reads of <em>T. urticae</em> strains MR-VPi and ROS-ITi to the reference genome sequence reported by Wybouw et al. (2019). The VCF file was filtered to remove SNPs relative to the reference genome if they were fixed between the MR-VPi and ROS-ITi strains (variants were predicted with GATK). The resulting SNP data was used for selection of a maximally informative set of genetic markers (midpoints of genotype bins) for use in an eQTL mapping experiment (file “MR-VPi_vs_ROS-ITi_genetic_markers.txt").
DOI: 10.34711/inptdat.673
title: Laser absorption spectroscopy for plasma-assisted thermochemical treatment - dataset

description: Laser absorption spectroscopy (LAS) was applied to investigate a low pressure DC-pulsed discharge in N2-H2 gas mixtures with addition of CH4 or O2. The discharge was maintained in an industrial-scale, active screen plasma nitrocarburizing (ASPNC) reactor with a steel active screen (AS). Spectroscopic lines of CH4, NH3, HCN, CO and H2O were recorded. The dataset contains the species densities for different gas mixtures.
DOI: 10.35077/act-bag
title: A molecularly defined and spatially resolved cell atlas of the whole mouse brain

description: In this project, we used MERFISH to perform in situ gene expression profiling of individual cells in the entire mouse brain, determine the cell-type identity of these cells and map the spatial organization of the cell types. We performed MERFISH imaging on 1124 or 1147 genes in a total of 245 brain slices (217 coronal, 28 sagittal) from a total of 4 animals.
description: DATASET METADATA: title:'A molecularly defined and spatially resolved cell atlas of the whole mouse brain', GeneralModality:'spatial transcriptomics', Technique:'MERFISH' SPECIMEN METADATA: LocalID:'Mouse 1', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'57-63', Ageunit:'Days', Sex:'Male', SampleLocalID:'Mouse 1', LocalID:'Mouse 2', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'57-63', Ageunit:'Days', Sex:'Female', SampleLocalID:'Mouse 2', LocalID:'Mouse 3', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'57-63', Ageunit:'Days', Sex:'Male', SampleLocalID:'Mouse 3', LocalID:'Mouse 4', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'57-63', Ageunit:'Days', Sex:'Male', SampleLocalID:'Mouse 4' INSTRUMENT METADATA: MicroscopeType:'Inverted', MicroscopeManufacturerAndModel:'Nikon TI2-U' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1.0', displayColor:'single color, gray scale', stepSizeX:'0.109', stepSizeY:'0.109'
DOI: 10.5066/p98os2xk
title: Bighorn Mountains, Wyoming Forest Mapping, 2013-2017

description: This data collection is associated with the project: &quot;Status and Trends of Deciduous Communities in the Bighorn Mountains&quot;. It contains the project study area, model evaluation data, model input data, and model output data in the form of probability of occurrence rasters for deciduous and coniferous species, as well as a synthesis map. The aim of the study is to assess the current trends of deciduous communities in the Bighorn National Forest in north-central Wyoming. The data here represents phase I of the project, completed in FY2017. The USGS created a synthesis map of coniferous and deciduous communities in the Bighorn Mountains of Wyoming using a species distribution modeling approach developed in the Wyoming Landscape Conservation Initiative (WLCI) (Assal et al. 2015). The modeling framework utilized a number of topographic covariates and temporal remote sensing data from the early, mid and late growing season to capitalize on phenological differences in vegetation types. We used the program RandomForest in the R statistical program to generate probability of occurrence models for deciduous and coniferous vegetation. The binary maps were combined into a synthesis map using the procedure from Assal et al. 2015. In Phase II of this project (to be completed in FY2018 and 2019), the USGS will conduct a preliminary assessment on the baseline condition of riparian deciduous communities. This will be a proof-of-concept study where the USGS will apply a framework used in prior research in upland aspen and sagebrush communities to detect trends in riparian vegetation condition from the mid-1980s to present. Literature Cited Assal et al. 2015: https://doi.org/10.1080/2150704X.2015.1072289
DOI: 10.5281/zenodo.7696597
title: Validation of highly sensitive method based on UHPLC-ESI-MS/MS for the quantification of progestogens and androgens in plant material.

description: We prepared a highly sensitive method for the quantification of progestogens and androgens in plant materials. This method is based on UHPLC-ESI-MS/MS. We show here the data used for the method validation. This includes the determination of linearity, recovery, precision, limits of detection and limits of quantification. The general procedure can be found in the txt or pdf file. The resulting data are collected in the excel file and can be found in the csv files, additonally.
DOI: 10.5281/zenodo.7820230
title: Proteinaceous Matter in PM2.5 in a Hilly Basin area, Southwestern China: Decreased Importance in Long-Range Transport and Atmospheric Degradation

description: Data
DOI: 10.5281/zenodo.8094645
title: Dataset: The performance of approximate equation of motion coupled cluster for valence and core states of heavy element systems

description: This dataset comprises outputs and post-processing results related to the paper "The performance of approximate equation of motion coupled cluster for valence and core states of heavy element systems", by Loic Halbert and Andre Severo Pereira Gomes.
DOI: 10.6073/pasta/b75f34d8de6fcfa59c882bb1acf96226
title: Forest-wide bird survey at 183 sample sites the Andrews Experimental Forest from 2009-present
DOI: 10.5445/ir/1000151856
title: GLORIA, ALIMA, BAHAMAS and ECMWF IFS data for SouthTRAC flight 10 from 16 to 17 September 2019

description: This dataset includes airborne observations together with forecasts and analyses that were used to study non-orographic gravity waves during research flight ST10 of the SouthTRAC campaign. The flight was carried out by the German research aircraft HALO (High Altitude and LOng Range Research Aircraft) on 16 and 17 September 2019 from Rio Grande, Tierra del Fuego, Argentina. The airborne observations include remote sensing observations of temperature and trace gases by GLORIA (Gimballed Limb Observer for Radiance Imaging of the Atmosphere by KIT and Forschungszentrum Jülich) and temperature by ALIMA (Airborne LIdar for Middle Atmosphere research by DLR-IPA). Furthermore, airborne in situ observations of temperature, the three wind components and further parameters by BAHAMAS (Basic Halo Measurement and Sensor System by DLR-FX) at a data rate of 10 Hz and 100 Hz are included. The observations are also available via the HALO database (https://halo-db.pa.op.dlr.de/ongoing_subset/1108). The forecasts and analyses include deterministic short-term forecasts and six-hourly operational analyses from the integrated forecast system (IFS) of the European Centre for Medium-Range Weather Forecasts (ECMWF). ECMWF IFS data are available at https://www.ecmwf.int/en/forecasts. The terms of use by the ECMWF apply.
DOI: 10.17188/1191505
title: Materials Data on B by Materials Project

description: B is alpha boron structured and crystallizes in the trigonal R-3m space group. The structure is three-dimensional. there are two inequivalent B sites. In the first B site, B is bonded in a 6-coordinate geometry to six B atoms. There are a spread of B–B bond distances ranging from 1.67–1.80 Å. In the second B site, B is bonded in a 7-coordinate geometry to seven B atoms. There is two shorter (1.78 Å) and two longer (2.01 Å) B–B bond length.
DOI: 10.5066/f7rf5s8x
title: Shenandoah River Accumulated Wastewater Ratio

description: De facto wastewater reuse from Waste Water Treatment Facilities (WWTF) has the potential to be a significant contributor of Endocrine Disrupting Chemicals. An ArcGIS model of WWTFs, NHDPlus Version 2 stream networks (USGS and EPA 2012), and gage stations across the Shenandoah River watershed was created to calculate accumulated wastewater ratio. Virginia Pollutant Discharge Elimination System (VPDES) discharge facilities, VPDES outfall locations, and stream gages were spatially joined to the nearest river segment. Waste Water inputs from VPDES outfall locations were summarized by river segment COMIDs (Common identifier). All VPDES wastewater discharge facility locations were verified with VPDES outfall locations and United States Environmental Protection Agency (EPA) Facility Registry Service's facilities. WWTFs were categorized as industrial or municipal based on the type of permit they were granted. Accumulated wastewater and accumulated wastewater ratio were calculated using a python script. Maximum facility-capacity permitted wastewater discharge and 2015 average-annual wastewater discharge were used to calculate accumulated wastewater ratios for mean-annual and mean-August streamflow conditions.