cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pj88jm
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Tribeles australis Phil."
 ]
}

 The dataset includes 33 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071528-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvxsxy
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ascionana darwinia Just & Wilson, 2004"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113613-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cq50x
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014404-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgaspv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079020-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4gjdq
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is R-Tipos - Herbário do Museu Nacional - Tipos",
 "Year 1831-1852"
 ]
}

 The dataset includes 94 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014432-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gunvqj
title: Occurrence Download

description: A dataset containing 2769 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Braya humilis (C.A.Mey.) B.L.Rob."
 ]
}

 The dataset includes 2769 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149525-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swp9b9
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001634-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q09pvo
title: Occurrence Download

description: A dataset containing 1657630823 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1657630823 records from 18706 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014037-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/nkwt-zqxd
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/tbt6-yf77
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/z2xx-mpvy
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/4fd5-c4vc
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/9gz4-tggc
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/azwe-upjg
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/h2tz-8zpx
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/rru4-prcy
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/uesg-5vvj
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/y2d7-tmv6
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/pwj5-w4mr
title: VOC (hydrocarbons) at Cape Verde Atmospheric Observatory

description: Measurement of VOC (hydrocarbons) at Cape Verde Atmospheric Observatory
DOI: 10.48597/23py-8v6e
title: Measurement of VOC (hydrocarbons) at Cape Verde Atmospheric Observatory

description: Measurement of VOC (hydrocarbons) at Cape Verde Atmospheric Observatory
DOI: 10.48597/cjpf-gsev
title: Measurement of VOC (hydrocarbons) at Neuglobsow

description: Measurement of VOC (hydrocarbons) at Neuglobsow
DOI: 10.48597/drbg-t74g
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/ew8m-e5te
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/mpuv-k6e7
title: Measurement of VOC (hydrocarbons) at Schauinsland

description: Measurement of VOC (hydrocarbons) at Schauinsland
DOI: 10.48597/nqf9-smgq
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/ppwf-e2wz
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/6z7b-3fkx
title: Measurement of Particle_number_concentration at Barcelona (Palau Reial)

description: Measurement of Particle_number_concentration at Barcelona (Palau Reial)
DOI: 10.48597/7xc8-q764
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/a638-ws8k
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/m8yc-cc5g
title: Measurement of Particle_number_concentration at Värriö

description: Measurement of Particle_number_concentration at Värriö
DOI: 10.48597/njcf-mtax
title: Measurement of VOC (hydrocarbons) at Cape Verde Atmospheric Observatory

description: Measurement of VOC (hydrocarbons) at Cape Verde Atmospheric Observatory
DOI: 10.48597/uzs8-fy6e
title: Measurement of VOC (hydrocarbons) at Schauinsland

description: Measurement of VOC (hydrocarbons) at Schauinsland
DOI: 10.48597/a4wb-p2d8
title: Inorganics in precipitation at Montelibretti

description: Measurement of Inorganics in precipitation at Montelibretti
DOI: 10.48597/x9uh-n4qc
title: Measurement of VOC (hydrocarbons) at Neuglobsow

description: Measurement of VOC (hydrocarbons) at Neuglobsow
DOI: 10.48597/b6f6-yz9k
title: Heavy metals at Montelibretti

description: Measurement of Heavy metals at Montelibretti
DOI: 10.48597/tdu7-8btz
title: Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/4h9v-zkqk
title: Measurement of Particle_number_concentration at Barcelona (Palau Reial)

description: Measurement of Particle_number_concentration at Barcelona (Palau Reial)
DOI: 10.48597/abad-tn8a
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/avqa-sq88
title: Measurement of Heavy metals at Montelibretti

description: Measurement of Heavy metals at Montelibretti
DOI: 10.48597/jpzv-q45x
title: Measurement of Nitrate at Leova II

description: Measurement of Nitrate at Leova II
DOI: 10.48597/kjm3-vvsw
title: Measurement of Inorganics in precipitation at Montelibretti

description: Measurement of Inorganics in precipitation at Montelibretti
DOI: 10.48597/rfrz-592d
title: Measurement of Sulphate_total at Leova II

description: Measurement of Sulphate_total at Leova II
DOI: 10.48597/tub2-v5cy
title: Measurement of Inorganics in air and particle phase at Montelibretti

description: Measurement of Inorganics in air and particle phase at Montelibretti
DOI: 10.48597/xzr4-keu9
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/3b45-2ymp
title: Measurement of Inorganics in precipitation at Montelibretti

description: Measurement of Inorganics in precipitation at Montelibretti
DOI: 10.48597/4t7x-fw5e
title: Measurement of Inorganics in air and particle phase at Montelibretti

description: Measurement of Inorganics in air and particle phase at Montelibretti
DOI: 10.48597/qewm-8knx
title: Measurement of Heavy metals at Montelibretti

description: Measurement of Heavy metals at Montelibretti
DOI: 10.48597/tdzu-8vrp
title: Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/v6ua-xvt2
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/6jj2-vdqt
title: Measurement of Sulphate_corrected at Leova II

description: Measurement of Sulphate_corrected at Leova II
DOI: 10.48597/6pwp-vfed
title: Measurement of Sulphate_corrected at Leova II

description: Measurement of Sulphate_corrected at Leova II
DOI: 10.48597/8rn6-w75t
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/8xw9-svwm
title: Measurement of Sum_nitric_acid_and_nitrate at Leova II

description: Measurement of Sum_nitric_acid_and_nitrate at Leova II
DOI: 10.48597/duq9-6s6n
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/xexa-4g6b
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/ynpw-wu8j
title: Measurement of Chloride at Leova II

description: Measurement of Chloride at Leova II
DOI: 10.48597/3cz6-9e8y
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/m3uv-et7w
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/p24j-hhgp
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/cbfv-k3zs
title: Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/wgp2-geas
title: Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/8k9t-ed3w
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/efzu-wh6h
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.5281/zenodo.18407403
title: Ventricular Assist Device Unloading Reverses Microvascular Senescence in Single Ventricle Disease

description: Ventricular Assist Device Unloading Reverses Microvascular Senescence in Single Ventricle Disease

 

Author list:

Xiao Li1,2#, Diwakar Turaga3,4#, Yi Zhao1, Chang-Ru Tsai5, Richard Gang Li1, Yuka Morikawa1, Hanna J Tadros3,6, Md Abdul Hassan Samee5, Iki Adachi7,8, and James F. Martin1,5*

 

Affiliations:                                                                                                                   

1The Texas Heart Institute at Baylor College of Medicine, Houston, TX 77030, USA.

2Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

3Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.

4Division of Critical Care Medicine, Texas Children's Hospital, Houston, TX 77030, USA.

5Department of Integrative Physiology, Baylor College of Medicine, Houston, TX 77030, USA.

6Division of Cardiology, Texas Children’s Hospital, Houston, TX 77030, USA.

7Department of Surgery, Baylor College of Medicine, Houston, TX 77030, USA.

8Division of Congenital Heart Surgery, Texas Children's Hospital, Houston, TX 77030, USA.

# These authors contributed equally 

*Corresponding author. Email: jfmartin@bcm.edu

 

Abstract:

Patients with hypoplastic left heart syndrome (HLHS) have an underdeveloped left ventricle and require multiple surgeries to reconfigure cardiac blood flow for survival. We studied myocardial microenvironment cell states using single nuclear RNA-sequencing and spatial transcriptomics on HLHS right ventricles at birth before heart failure develops; in post-surgical patients in heart failure; and in patients treated for heart failure by ventricular assist device (VAD), which unloads the heart and relieves hypoxia and volume overload. HLHS cardiomyocytes within the heart, as well as cardiomyocytes derived from induced pluripotent stem cells are senescent, indicating cardiomyocyte intrinsic senescence. Spatial transcriptomics revealed a microvasculature niche within capillary beds that contained hypoxic endothelial cells and pericytes and senescent cardiac fibroblasts with increased YAP activity, indicating a mechanically stressed and hypoxic microenvironment. This niche is similar to adult myocardial infarction but not pediatric dilated cardiomyopathy with heart failure pointing to a prominent role of hypoxia in senescence. The microvascular senescent niche was improved by VAD providing insight into the potential to reverse cardiac cell states that lead to heart failure.
description: Data deposited:

snRNA-seq_matrcies: 



17 Stage I-III HLHS patients (HLHS_01 - HLHS_17)  

4 Post-VAD HLHS patients (VAD_02 - VAD_05)


 Format: Standard 10x CellRanger output matrix files

visium_st_matries_images: 



1 donor control (Ctrl_02)  

3 Stage I-III HLHS patients (HLHS_03, HLHS_13 and HLHS_14*)  

2 Post-VAD HLHS patient (VAD_04 and VAD_05*)


 Format: Standard 10x SpaceRanger output matrix files

*Note VAD_05 tissue (small) and HLHS_14 tissue (large) are in the same visium capture area.
DOI: 10.5281/zenodo.18407404
title: Ventricular Assist Device Unloading Reverses Microvascular Senescence in Single Ventricle Disease

description: Ventricular Assist Device Unloading Reverses Microvascular Senescence in Single Ventricle Disease

 

Author list:

Xiao Li1,2#, Diwakar Turaga3,4#, Yi Zhao1, Chang-Ru Tsai5, Richard Gang Li1, Yuka Morikawa1, Hanna J Tadros3,6, Md Abdul Hassan Samee5, Iki Adachi7,8, and James F. Martin1,5*

 

Affiliations:                                                                                                                   

1The Texas Heart Institute at Baylor College of Medicine, Houston, TX 77030, USA.

2Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

3Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.

4Division of Critical Care Medicine, Texas Children's Hospital, Houston, TX 77030, USA.

5Department of Integrative Physiology, Baylor College of Medicine, Houston, TX 77030, USA.

6Division of Cardiology, Texas Children’s Hospital, Houston, TX 77030, USA.

7Department of Surgery, Baylor College of Medicine, Houston, TX 77030, USA.

8Division of Congenital Heart Surgery, Texas Children's Hospital, Houston, TX 77030, USA.

# These authors contributed equally 

*Corresponding author. Email: jfmartin@bcm.edu

 

Abstract:

Patients with hypoplastic left heart syndrome (HLHS) have an underdeveloped left ventricle and require multiple surgeries to reconfigure cardiac blood flow for survival. We studied myocardial microenvironment cell states using single nuclear RNA-sequencing and spatial transcriptomics on HLHS right ventricles at birth before heart failure develops; in post-surgical patients in heart failure; and in patients treated for heart failure by ventricular assist device (VAD), which unloads the heart and relieves hypoxia and volume overload. HLHS cardiomyocytes within the heart, as well as cardiomyocytes derived from induced pluripotent stem cells are senescent, indicating cardiomyocyte intrinsic senescence. Spatial transcriptomics revealed a microvasculature niche within capillary beds that contained hypoxic endothelial cells and pericytes and senescent cardiac fibroblasts with increased YAP activity, indicating a mechanically stressed and hypoxic microenvironment. This niche is similar to adult myocardial infarction but not pediatric dilated cardiomyopathy with heart failure pointing to a prominent role of hypoxia in senescence. The microvascular senescent niche was improved by VAD providing insight into the potential to reverse cardiac cell states that lead to heart failure.
description: Data deposited:

snRNA-seq_matrcies: 



17 Stage I-III HLHS patients (HLHS_01 - HLHS_17)  

4 Post-VAD HLHS patients (VAD_02 - VAD_05)


 Format: Standard 10x CellRanger output matrix files

visium_st_matries_images: 



1 donor control (Ctrl_02)  

3 Stage I-III HLHS patients (HLHS_03, HLHS_13 and HLHS_14*)  

2 Post-VAD HLHS patient (VAD_04 and VAD_05*)


 Format: Standard 10x SpaceRanger output matrix files

*Note VAD_05 tissue (small) and HLHS_14 tissue (large) are in the same visium capture area.
DOI: 10.48597/mtjk-t4gh
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/pmgz-e9xr
title: Measurement of Pm10_mass at Leova II

description: Measurement of Pm10_mass at Leova II
DOI: 10.15468/dl.4g66h9
title: Occurrence Download

description: A dataset containing 1166502 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Guyana"
 ]
}

 The dataset includes 1166502 records from 1176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010314-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/u3zc-mhje
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/um4v-dcq6
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/7bdm-zg8p
title: Measurement of Inorganics in air and particle phase at Leova II

description: Measurement of Inorganics in air and particle phase at Leova II
DOI: 10.48597/wyeb-djvq
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/c7uu-k9ku
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/dwpt-jua6
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/gcdc-7js8
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/gqgk-b56b
title: Measurement of Pm10_mass at Leova II

description: Measurement of Pm10_mass at Leova II
DOI: 10.48597/scwx-bajw
title: Measurement of Nitrogen_dioxide at Leova II

description: Measurement of Nitrogen_dioxide at Leova II
DOI: 10.48597/ud82-e2ye
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/5zh6-ehaz
title: Measurement of pH at Leova II

description: Measurement of pH at Leova II
DOI: 10.48597/c52t-yxp9
title: Measurement of Inorganics in precipitation at Leova II

description: Measurement of Inorganics in precipitation at Leova II
DOI: 10.48597/d76p-9szc
title: Measurement of Sulphate_total at Leova II

description: Measurement of Sulphate_total at Leova II
DOI: 10.48597/nv9z-ngbj
title: Measurement of Precipitation_amount at Leova II

description: Measurement of Precipitation_amount at Leova II
DOI: 10.15468/dl.4y3a76
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falconiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-150 -60,-120 -60,-120 -30,-150 -30,-150 -60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062860-250920141307145/datasets/export for details.
DOI: 10.15468/dl.ew3f6y
title: Occurrence Download

description: A dataset containing 57569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falconiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((150 -30,180 -30,180 0,150 0,150 -30))"
 ]
}

 The dataset includes 57569 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062821-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbe7vc
title: Occurrence Download

description: A dataset containing 74015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thymallus thymallus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 74015 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062779-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.