cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.espcgm
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-97.2918559999999957 32.7128336000000033, -97.2918559999999957 32.7157651200000004, -97.2918559999999957 32.7182275999999987, -97.2918559999999957 32.7206900799999971, -97.2918559999999957 32.7222144799999981, -97.2918559999999957 32.7251460000000023, -97.2888172499999939 32.7251460000000023, -97.2868303700000041 32.7251460000000023, -97.2841422500000022 32.7251460000000023, -97.2823891200000048 32.7251460000000023, -97.2801685000000020 32.7251460000000023, -97.2801685000000020 32.7236216100000021, -97.2801685000000020 32.7216281700000025, -97.2801685000000020 32.7190484300000008, -97.2801685000000020 32.7172895200000013, -97.2801685000000020 32.7143579900000034, -97.2801685000000020 32.7128336000000033, -97.2821553800000061 32.7128336000000033, -97.2849603800000011 32.7128336000000033, -97.2871810000000039 32.7128336000000033, -97.2885835000000014 32.7128336000000033, -97.2918559999999957 32.7128336000000033))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101956-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8waua6
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana crinita Froel."
 ]
}

 The dataset includes 396 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036375-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpubyv
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-82.90168 -5.86396,-51.09832 -5.86396,-51.09832 6.86396,-82.90168 6.86396,-82.90168 -5.86396))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Roestes ogilviei (Fowler, 1914)"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109112-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krkyvh
title: Occurrence Download

description: A dataset containing 975 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podolepis canescens A.Cunn. ex DC."
 ]
}

 The dataset includes 975 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089115-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7ye43
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-10 52,-12 52,-12 51,-10 51,-10 52))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "LastInterpreted is greater than or equal to 2022-01-01",
 "LastInterpreted is less than or equal to 2022-11-10",
 "TaxonKey is one of (Scleractinia, Alcyonacea)"
 ]
}

 The dataset includes 227 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166507-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puvq6s
title: Occurrence Download

description: A dataset containing 5341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Falco subniger",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 5341 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071508-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwc93c
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eurysquilla pumae Hendrickx & Salgado-Barragán, 1987"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119239-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y44ds
title: Occurrence Download

description: A dataset containing 147043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Tanacetum vulgare L."
 ]
}

 The dataset includes 147043 records from 645 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036367-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzqm9g
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Cyperus reflexus Vahl"
 ]
}

 The dataset includes 342 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101983-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9n6f4x
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormosolenia alpina (Sieber ex Schult.) Pimenov"
 ]
}

 The dataset includes 30 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071535-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.352szb
title: Occurrence Download

description: A dataset containing 12989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Natural History Museum (London) Collection Specimens",
 "Geometry POLYGON((110.70541 -44.62552,156.40397 -44.62552,156.40397 -10.63149,110.70541 -10.63149,110.70541 -44.62552))"
 ]
}

 The dataset includes 12989 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109113-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2x8jx
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petunia bajeensis T.Ando & Hashim."
 ]
}

 The dataset includes 69 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071495-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42emwk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Prothoe franck"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116379-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6z22us
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thaumatophyllum lundii (Warm.) Sakur., Calazans & Mayo"
 ]
}

 The dataset includes 74 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074054-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5d8yb
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Lalage atrovirens",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 610 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074233-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkcshq
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Tapoides Airy Shaw"
 ]
}

 The dataset's 2 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030767-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vujce7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philodendron longipedunculatum Croat & M.M.Mora"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074050-230530130749713/datasets/export for details.
DOI: 10.15468/dl.bpnh3w
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cumopsis robusta Day, 1975"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116383-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5xbkr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philodendron madronense Croat"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074059-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-02.3033839/2548655
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033840/2548656
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033841/2548657
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033842/2548658
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033843/2548659
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033844/2548660
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033845/2548661
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033846/2548662
title: Data for EMSL Project 60579 from February 2024
DOI: 10.25582/data.2024-02.3033851/2548663
title: Data for EMSL Project 60579 from February 2024
DOI: 10.15468/dl.3phvqg
title: Occurrence Download

description: A dataset containing 5247225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1987-2025"
 ]
}

 The dataset includes 5247225 records from 2316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009460-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26700607.v1
title: Additional file 5 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 5. Differential expression analysis data in cancer cells.
DOI: 10.6084/m9.figshare.26700607
title: Additional file 5 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 5. Differential expression analysis data in cancer cells.
DOI: 10.6084/m9.figshare.26700610
title: Additional file 6 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 6. Differential expression analysis data in CD8+ effector T cells.
DOI: 10.6084/m9.figshare.26700610.v1
title: Additional file 6 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 6. Differential expression analysis data in CD8+ effector T cells.
DOI: 10.6084/m9.figshare.26700613
title: Additional file 7 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 7. Differential expression analysis data in NK cells.
DOI: 10.6084/m9.figshare.26700613.v1
title: Additional file 7 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 7. Differential expression analysis data in NK cells.
DOI: 10.6084/m9.figshare.26700616
title: Additional file 8 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 8. Differential expression analysis data in Treg cells.
DOI: 10.6084/m9.figshare.26700616.v1
title: Additional file 8 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 8. Differential expression analysis data in Treg cells.
DOI: 10.6084/m9.figshare.26700622.v1
title: Additional file 9 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 9. Raw data used for CellphoneDB analysis.
DOI: 10.6084/m9.figshare.26700622
title: Additional file 9 of Single-cell profiling of response to neoadjuvant chemo-immunotherapy in surgically resectable esophageal squamous cell carcinoma

description: Additional file 9. Raw data used for CellphoneDB analysis.
DOI: 10.6084/m9.figshare.25530373
title: Additional file 2 of Full-spectral genome analysis of natural killer/T cell lymphoma highlights impacts of genome instability in driving its progression

description: Additional file 2: Table S1. Summary of the sequencing coverage of the 163 NKTCL tumor samples. Table S2. Distribution of clinical features across different patient cohorts (n = 163). Table S3. Prognostic factors for overall survival (OS) by univariate and multivariate analysis. Table S4. The clinical feature summary for the 163 NKTCL patients. Table S5. Cancer-related genes interrupted by structural variant (SV) breakpoints in NKTCL patients with WGS data.
DOI: 10.6084/m9.figshare.25530373.v1
title: Additional file 2 of Full-spectral genome analysis of natural killer/T cell lymphoma highlights impacts of genome instability in driving its progression

description: Additional file 2: Table S1. Summary of the sequencing coverage of the 163 NKTCL tumor samples. Table S2. Distribution of clinical features across different patient cohorts (n = 163). Table S3. Prognostic factors for overall survival (OS) by univariate and multivariate analysis. Table S4. The clinical feature summary for the 163 NKTCL patients. Table S5. Cancer-related genes interrupted by structural variant (SV) breakpoints in NKTCL patients with WGS data.
DOI: 10.6084/m9.figshare.25530375
title: Additional file 2 of Leveraging new methods for comprehensive characterization of mitochondrial DNA in esophageal squamous cell carcinoma

description: Additional file 2: Table S1. The non-ref NUMTs in two ESCC patients based on short-read and long-read sequencing data. Table S2. The 110 distinct non-ref NUMTs and the occurrence in the previous study. Table S3. The 126 ESCC tumor specific mtDNA variants.
DOI: 10.6084/m9.figshare.25530375.v1
title: Additional file 2 of Leveraging new methods for comprehensive characterization of mitochondrial DNA in esophageal squamous cell carcinoma

description: Additional file 2: Table S1. The non-ref NUMTs in two ESCC patients based on short-read and long-read sequencing data. Table S2. The 110 distinct non-ref NUMTs and the occurrence in the previous study. Table S3. The 126 ESCC tumor specific mtDNA variants.
DOI: 10.6084/m9.figshare.25530384
title: Additional file 2 of Species-aware DNA language models capture regulatory elements and their evolution

description: Additional file 2. List of the specific datasets analyzed.
DOI: 10.6084/m9.figshare.25530384.v1
title: Additional file 2 of Species-aware DNA language models capture regulatory elements and their evolution

description: Additional file 2. List of the specific datasets analyzed.
DOI: 10.5281/zenodo.13338474
title: conraua_beccarii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.13338475
title: conraua_beccarii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.26700709
title: Additional file 4 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 4: Table S3. 315 genes annotated by Cluster A.
DOI: 10.6084/m9.figshare.26700709.v1
title: Additional file 4 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 4: Table S3. 315 genes annotated by Cluster A.
DOI: 10.6084/m9.figshare.26700712
title: Additional file 5 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 5: Table S4. 132 genes annotated by SLM.
DOI: 10.6084/m9.figshare.26700712.v1
title: Additional file 5 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 5: Table S4. 132 genes annotated by SLM.
DOI: 10.6084/m9.figshare.26700715
title: Additional file 6 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 6: Table S5. CMT3b regulates gene in meiocyte and sperm.
DOI: 10.6084/m9.figshare.26700715.v1
title: Additional file 6 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 6: Table S5. CMT3b regulates gene in meiocyte and sperm.
DOI: 10.6084/m9.figshare.26700718
title: Additional file 7 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 7: Table S6. 83 zygotic genes upregulated in cmt3b egg.
DOI: 10.6084/m9.figshare.26700718.v1
title: Additional file 7 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 7: Table S6. 83 zygotic genes upregulated in cmt3b egg.
DOI: 10.6084/m9.figshare.26700721
title: Additional file 8 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 8: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.26700721.v1
title: Additional file 8 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

description: Additional file 8: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.25530336
title: Additional file 1 of Harnessing alkaline-pH regulatable promoters for efficient methanol-free expression of enzymes of industrial interest in Komagataella Phaffii

description: Additional file 1 (xlsx): Oligonucleotides used in this work
DOI: 10.15156/bio/sh0201951.10fu
title: SH0201951.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0201952.10fu
title: SH0201952.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.