cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7866077.v1
title: A re-annotation of the Anopheles darlingi mobilome

description: Abstract The mobilome, portion of the genome composed of transposable elements (TEs), of Anopheles darlingi was described together with the genome of this species. Here, this mobilome was revised using similarity and de novo search approaches. A total of 5.6% of the A. darlingi genome is derived of TEs. Class I gypsy and copia were the most abundant superfamilies, corresponding to 22.36% of the mobilome. Non-LTR elements of the R1 and Jockey superfamilies account for 11% of the TEs. Among Class II TEs, the mariner superfamily is the most abundant (16.01%). Approximately 87% of the A. darlingi mobilome consist of short, truncated and/or degenerated copies of TEs. Only three retrotransposons, two belonging to gypsy and one to copia superfamilies, are putatively active elements. Only one Class II element, belonging to the mariner superfamily, is putatively active, having 12 copies in the genome. The TE landscape of A. darlingi is formed primarily by degenerated elements and, therefore, somewhat stable. Future applications of TE-based vectors for genetic transformation of A. darlingi should take into consideration mariner and piggyBac transposons, because full length and putatively active copies of these elements are present in its genome.
DOI: 10.6084/m9.figshare.7866059
title: Combination of Multi-Energy Calibration (MEC) and Laser-Induced Breakdown Spectroscopy (LIBS) for Dietary Supplements Analysis and Determination of Ca, Mg and K

description: This study describes the application of laser-induced breakdown spectroscopy (LIBS) for the direct determination of Ca, K and Mg in powdered dietary supplements. Multi-energy calibration (MEC) method was applied to obtain a calibration curve. With MEC, it was possible to observe spectral interferences and select adequate emission lines from LIBS. For Ca and Mg, five lines were selected and for K just two lines among four could be selected (compromising the results). The trueness for dietary supplements ranged from 81 to 103% for Ca and 74 to 106% for Mg. For K, just the samples S3 (95%) and S5 (109%) showed acceptable trueness values. In the case of Ca and K, besides the MEC, the normalization using C as internal standard also improved the figure of merit results. The MEC and normalization processes showed that possible matrix effect and spectral interferences could be avoided, and the results of trueness and precision were satisfactory.
DOI: 10.6084/m9.figshare.7866062
title: Cross-genera SSR transferability in cacti revealed by a case study using Cereus (Cereeae, Cactaceae)

description: Abstract The study of transferability of simple sequence repeats (SSR) among closely related species is a well-known strategy in population genetics, however transferability among distinct genera is less common. We tested cross-genera SSR amplification in the family Cactaceae using a total of 20 heterologous primers previously developed for the genera Ariocarpus, Echinocactus, Polaskia and Pilosocereus, in four taxa of the genus Cereus: C. fernambucensis subsp. fernambucensis, C. fernambucensis subsp. sericifer, C. jamacaru and C. insularis. Nine microsatellite loci were amplified in Cereus resulting in 35.2% of success in transferability, which is higher than the average rate of 10% reported in the literature for cross-genera transferability in eudicots. The genetic variation in the transferred markers was sufficient to perform standard clustering analysis, indicating each population as a cohesive genetic cluster. Overall, the amount of genetic variation found indicates that the transferred SSR markers might be useful in large-scale population studies within the genus Cereus.
DOI: 10.6084/m9.figshare.7866065.v1
title: Impact of untreated dental caries on oral health-related quality of life of children with special health care needs

description: Abstract: The oral health status of children with special health care needs (SHCN) can affect their quality of life wich domains of the Brazilian version of the Early Childohood Oral Health Impact Scale (B-ECOHIS). A cross-sectional study was conducted in children with SHCN (aged 1 to 9 years), who underwent an oral examination for the assessment of dental caries severity. Parents/caregivers answered two questionnaires, one on oral health-related quality of life (OHRQoL) - B-ECOHIS, and one on socioeconomic characteristics. Statistical analyses were performed using the Kolmogorov-Smirnov test, Mann-Whitney U-test, Poisson regression, Point-biserial correlation coefficient, and Cronbach's alpha. A total of 128 children participated in the study and OHRQoL was affected in 68.75% of them. The function domain in the Child Impact Section (CIS) had a higher mean value. Caries severity was associated with worse quality of life (p=0.001). Severe dental caries was associated with a negative impact on the OHRQoL of disabled children and of their families. The impact of untreated dental caries and severity of dental caries was associated with the CIS domains (except for the self-image/social interaction domain).
DOI: 10.6084/m9.figshare.7866068.v1
title: Body Mass Index as a predictor of multimorbidity in the Brazilian population

description: Abstract Overweight is a health risk indicator, but little is known about its influence on the chronic non-communicable diseases (NCD) multimorbidity. The aim of this study was to identify the predictive values and sociodemographic factors associated with Body Mass Index (BMI) as a determinant of the occurrence of NCD multimorbidity in Brazilian men and women. Data from the "Surveillance of risk and protection factors for chronic diseases by telephone survey" -2013 national survey were used. The population was composed of ≥18 year-old individuals and those living in house with a fixed telephone line in the 27 Brazilian’s capitals. The outcome variables were BMI and its respective predictive value for the occurrence of multimorbidity (≥2 NCDs). The exposure was age, marital status and educational level. Inferential statistics included the construction of Receiver Operating Characteristic curves (cutoff point defined by sensibility [Se] and specificity [Sp]) and the association by Poisson Regression, stratified by sex. The values with the best predictive capacity for multimorbidity were 26.7 kg/m2 (Se = 60.9%, Sp = 60.2%) for men and 25.7 kg/m2 (Se = 61.8%, Sp = 61.1%) for women. The predictive multimorbidity value followed the progress of age groups up to 55 to 64 years for both groups. Women with higher educational level showed an inverse association for the presence of the outcome. BMI can be considered a predictor of the occurrence of multimorbidity, and sociodemographic profile associated with this predictive value was advancement age and inversely associated with educational level in women.
DOI: 10.6084/m9.figshare.7866056
title: Criteria validity of the Netherlands physical activity questionnaire for children

description: Abstract Physical activity measurement with accuracy and precision is extremely important in establishing the dose-response relationship between levels of physical activity and the different outcome possibilities. Subjective methods of measurement, such as proxy-reports have been used as a possibility to check physical activity in children. The aim of this study was to test the Netherlands Physical Activity Questionnaire (NPAQ), valid for Brazilian schoolchildren using physical aerobic fitness as a criterion. The study included 290 children aged 6-10 years from public schools of Itaúna/MG. NPAQ was applied to parents or guardians and children were tested using the Luc Léger test. NPAQ had mean score of 25 for children (25 for boys and 24 for girls) and VO2max was 50.8 ml/kg/min for children (52.6 and 50.2 ml/kg/min for boys and girls, respectively). The Spearmam correlation test showed significant correlation (rsho = 0.146; p = 0.013) between NPAQ and VO2max, but the correlation is weak (Kappa -0.14). The results showed that NPAQ presented poor construct validity for physical activity measurement in a Brazilian schoolchildren sample, based on aerobic physical fitness criteria.
DOI: 10.6084/m9.figshare.7866062.v1
title: Cross-genera SSR transferability in cacti revealed by a case study using Cereus (Cereeae, Cactaceae)

description: Abstract The study of transferability of simple sequence repeats (SSR) among closely related species is a well-known strategy in population genetics, however transferability among distinct genera is less common. We tested cross-genera SSR amplification in the family Cactaceae using a total of 20 heterologous primers previously developed for the genera Ariocarpus, Echinocactus, Polaskia and Pilosocereus, in four taxa of the genus Cereus: C. fernambucensis subsp. fernambucensis, C. fernambucensis subsp. sericifer, C. jamacaru and C. insularis. Nine microsatellite loci were amplified in Cereus resulting in 35.2% of success in transferability, which is higher than the average rate of 10% reported in the literature for cross-genera transferability in eudicots. The genetic variation in the transferred markers was sufficient to perform standard clustering analysis, indicating each population as a cohesive genetic cluster. Overall, the amount of genetic variation found indicates that the transferred SSR markers might be useful in large-scale population studies within the genus Cereus.
DOI: 10.6084/m9.figshare.7866044
title: Feeding activity of the cayenne pompano Trachinotus cayennensis (Cuvier 1832) (Perciformes, Carangidae) in estuaries on the western coast of the state of Maranhão, Brazil

description: Abstract The present paper addresses the feeding activity of Trachinotus cayennensis, collected in Lençóis Bay (1°18’S – 1°19’S; 44°51’W – 44°53’W) on the western coast of the state of Maranhão, Brazil. Sampling was conducted between June 2012 and June 2013 using driftnets with stretch mesh sizes from 95 to 100 mm. A total of 205 individuals (114 females and 91 males) were analyzed. Statistically significant differences in the sex ratio were found in June, September and December 2012. Food items were analyzed based on frequency of occurrence and volumetric method, with the subsequent calculation of the alimentary importance index. Three size groups were defined to determine possible ontogenetic changes in eating habits based on the size range of the individuals collected: I (˂ 29 cm), II (29.1 to 37.0) and III (≥ 37.1). Eleven food item categories were identified: mollusks, polychaetes, crustaceans, nematodes, insects, algae, bryozoans, ophiuroids, fishes, vegetal matter and sediments. The variety of items in the diet of T. cayennensis indicates considerable feeding plasticity and opportunistic behavior. Seasonal variations influenced the feeding pattern of the species, with greater feeding activity in the dry season. The considerable availability of resources in estuarine habitats of the western coast of Maranhão constitutes another factor that influences the feeding behavior of this species.
DOI: 10.6084/m9.figshare.7866056.v1
title: Criteria validity of the Netherlands physical activity questionnaire for children

description: Abstract Physical activity measurement with accuracy and precision is extremely important in establishing the dose-response relationship between levels of physical activity and the different outcome possibilities. Subjective methods of measurement, such as proxy-reports have been used as a possibility to check physical activity in children. The aim of this study was to test the Netherlands Physical Activity Questionnaire (NPAQ), valid for Brazilian schoolchildren using physical aerobic fitness as a criterion. The study included 290 children aged 6-10 years from public schools of Itaúna/MG. NPAQ was applied to parents or guardians and children were tested using the Luc Léger test. NPAQ had mean score of 25 for children (25 for boys and 24 for girls) and VO2max was 50.8 ml/kg/min for children (52.6 and 50.2 ml/kg/min for boys and girls, respectively). The Spearmam correlation test showed significant correlation (rsho = 0.146; p = 0.013) between NPAQ and VO2max, but the correlation is weak (Kappa -0.14). The results showed that NPAQ presented poor construct validity for physical activity measurement in a Brazilian schoolchildren sample, based on aerobic physical fitness criteria.
DOI: 10.6084/m9.figshare.7866059.v1
title: Combination of Multi-Energy Calibration (MEC) and Laser-Induced Breakdown Spectroscopy (LIBS) for Dietary Supplements Analysis and Determination of Ca, Mg and K

description: This study describes the application of laser-induced breakdown spectroscopy (LIBS) for the direct determination of Ca, K and Mg in powdered dietary supplements. Multi-energy calibration (MEC) method was applied to obtain a calibration curve. With MEC, it was possible to observe spectral interferences and select adequate emission lines from LIBS. For Ca and Mg, five lines were selected and for K just two lines among four could be selected (compromising the results). The trueness for dietary supplements ranged from 81 to 103% for Ca and 74 to 106% for Mg. For K, just the samples S3 (95%) and S5 (109%) showed acceptable trueness values. In the case of Ca and K, besides the MEC, the normalization using C as internal standard also improved the figure of merit results. The MEC and normalization processes showed that possible matrix effect and spectral interferences could be avoided, and the results of trueness and precision were satisfactory.
DOI: 10.6084/m9.figshare.7866035
title: Identification of novel mutations of Insulin Receptor Substrate 1 (IRS1) in tumor samples of non-small cell lung cancer (NSCLC): Implications for aberrant insulin signaling in development of cancer

description: Abstract Lung cancer is the leading cause of cancer-related death, and NSCLC constitutes nearly 85%–90% of all cases. The IRS proteins function as adaptors and transmit signals from multiple receptors. Upon binding of insulin to the insulin receptor (IR), IRS1 is phosphorylated at several YXXM motifs creating docking sites for the binding of PI3Kp85, which activates AKT kinase. Therefore, we thought that gain of function mutantions of IRS1 could be related to development of lung cancer. In line with this, we wanted determine whether the IRS1 gene was mutated in the coding regions surrounding YXXM motifs. We sequenced the coding regions surrounding YXXM motifs of IRS1 using tumor samples of 42 NSCLC patients and 40 matching controls and found heterozygote p.S668T mutation in nine of 42 samples and four of nine also had the p.D674H mutation. We generated IRS1 expression vectors harboring p.S668T, p.D674H and double mutants. Expression of the mutants differentially affected insulin-induced phosphorylation of IRS1, AKT, ERK, and STAT3. Also, our mutants induced proliferation, glucose uptake, inhibited the migration of 293T cells and affected the responsiveness of the cells to cisplatin and radiation. Our results suggest that these novel mutations play a role in the phenotype of lung cancer.
DOI: 10.6084/m9.figshare.7866038
title: Polymorphism of Sooty-fronted Spinetail (Synallaxis frontalis Aves: Furnariidae): Evidence of chromosomal rearrangements by pericentric inversion in autosomal macrochromosomes

description: Abstract The Passeriformes is the most diverse and cytogenetically well-known clade of birds, comprising approximately 5,000 species. The sooty-fronted spinetail (Synallaxis frontalis Aves: Furnariidae) species, which belongs to the order Passeriformes, is typically found in South America, where it is widely distributed. Polymorphisms provide genetic variability, important for several evolutionary processes, including speciation and adaptation to the environment. The aim of this work was to analyze the possible cytotypes and systemic events involved in the species polymorphism. Of the sampled 19 individuals, two thirds were polymorphic, an event supposedly linked to mutations resulting from genomic evolution that can be transmitted hereditarily. A chromosomal polymorphism was detected between the 1st and 3rdpairs of autosomal macrochromosomes. This type of polymorphism is related to a pericentric inversion in regions involving chromosomal rearrangements. Differently from other polymorphism studies that report a link between polymorphic chromosomes and phenotypic changes, S. frontalis did not present any morphological variation in the sampled individuals.
DOI: 10.6084/m9.figshare.7866038.v1
title: Polymorphism of Sooty-fronted Spinetail (Synallaxis frontalis Aves: Furnariidae): Evidence of chromosomal rearrangements by pericentric inversion in autosomal macrochromosomes

description: Abstract The Passeriformes is the most diverse and cytogenetically well-known clade of birds, comprising approximately 5,000 species. The sooty-fronted spinetail (Synallaxis frontalis Aves: Furnariidae) species, which belongs to the order Passeriformes, is typically found in South America, where it is widely distributed. Polymorphisms provide genetic variability, important for several evolutionary processes, including speciation and adaptation to the environment. The aim of this work was to analyze the possible cytotypes and systemic events involved in the species polymorphism. Of the sampled 19 individuals, two thirds were polymorphic, an event supposedly linked to mutations resulting from genomic evolution that can be transmitted hereditarily. A chromosomal polymorphism was detected between the 1st and 3rdpairs of autosomal macrochromosomes. This type of polymorphism is related to a pericentric inversion in regions involving chromosomal rearrangements. Differently from other polymorphism studies that report a link between polymorphic chromosomes and phenotypic changes, S. frontalis did not present any morphological variation in the sampled individuals.
DOI: 10.6084/m9.figshare.7866044.v1
title: Feeding activity of the cayenne pompano Trachinotus cayennensis (Cuvier 1832) (Perciformes, Carangidae) in estuaries on the western coast of the state of Maranhão, Brazil

description: Abstract The present paper addresses the feeding activity of Trachinotus cayennensis, collected in Lençóis Bay (1°18’S – 1°19’S; 44°51’W – 44°53’W) on the western coast of the state of Maranhão, Brazil. Sampling was conducted between June 2012 and June 2013 using driftnets with stretch mesh sizes from 95 to 100 mm. A total of 205 individuals (114 females and 91 males) were analyzed. Statistically significant differences in the sex ratio were found in June, September and December 2012. Food items were analyzed based on frequency of occurrence and volumetric method, with the subsequent calculation of the alimentary importance index. Three size groups were defined to determine possible ontogenetic changes in eating habits based on the size range of the individuals collected: I (˂ 29 cm), II (29.1 to 37.0) and III (≥ 37.1). Eleven food item categories were identified: mollusks, polychaetes, crustaceans, nematodes, insects, algae, bryozoans, ophiuroids, fishes, vegetal matter and sediments. The variety of items in the diet of T. cayennensis indicates considerable feeding plasticity and opportunistic behavior. Seasonal variations influenced the feeding pattern of the species, with greater feeding activity in the dry season. The considerable availability of resources in estuarine habitats of the western coast of Maranhão constitutes another factor that influences the feeding behavior of this species.
DOI: 10.6084/m9.figshare.7866029
title: Analysis of the adaptability of black bean cultivars by means of quantile regression

description: ABSTRACT: The aim of this study was to use quantile regression (QR) to characterize the effect of the adaptability parameter throughout the distribution of the productivity variable on black bean cultivars launched by different national research institutes (research centers) over the last 50 years. For this purpose, 40 cultivars developed by Brazilian genetic improvement programs between 1959 and 2013 were used. Initially, QR models were adjusted considering three quantiles (τ = 0.2, 0.5 and 0.8). Subsequently, with the confidence intervals, quantile models τ = 0.2 and 0.8 (QR0.2 and QR0.8) showed differences regarding the parameter of adaptability and average productivity. Finally, by grouping the cultivars into one of the two groups defined from QR0.2 and QR0.8, it was reported that the younger cultivars were associated to the quantile τ = 0.8, i.e., those with higher yields and more responsive conditions indicating that genetic improvement over the last 50 years resulted in an increase in both the productivity and the adaptability of cultivars.
DOI: 10.6084/m9.figshare.7866032
title: Science and evolution

description: Abstract Evolution is both a fact and a theory. Evolution is widely observable in laboratory and natural populations as they change over time. The fact that we need annual flu vaccines is one example of observable evolution. At the same time, evolutionary theory explains more than observations, as the succession on the fossil record. Hence, evolution is also the scientific theory that embodies biology, including all organisms and their characteristics. In this paper, we emphasize why evolution is the most important theory in biology. Evolution explains every biological detail, similar to how history explains many aspects of a current political situation. Only evolution explains the patterns observed in the fossil record. Examples include the succession in the fossil record; we cannot find the easily fossilized mammals before 300 million years ago; after the extinction of the dinosaurs, the fossil record indicates that mammals and birds radiated throughout the planet. Additionally, the fact that we are able to construct fairly consistent phylogenetic trees using distinct genetic markers in the genome is only explained by evolutionary theory. Finally, we show that the processes that drive evolution, both on short and long time scales, are observable facts.
DOI: 10.6084/m9.figshare.7866035.v1
title: Identification of novel mutations of Insulin Receptor Substrate 1 (IRS1) in tumor samples of non-small cell lung cancer (NSCLC): Implications for aberrant insulin signaling in development of cancer

description: Abstract Lung cancer is the leading cause of cancer-related death, and NSCLC constitutes nearly 85%–90% of all cases. The IRS proteins function as adaptors and transmit signals from multiple receptors. Upon binding of insulin to the insulin receptor (IR), IRS1 is phosphorylated at several YXXM motifs creating docking sites for the binding of PI3Kp85, which activates AKT kinase. Therefore, we thought that gain of function mutantions of IRS1 could be related to development of lung cancer. In line with this, we wanted determine whether the IRS1 gene was mutated in the coding regions surrounding YXXM motifs. We sequenced the coding regions surrounding YXXM motifs of IRS1 using tumor samples of 42 NSCLC patients and 40 matching controls and found heterozygote p.S668T mutation in nine of 42 samples and four of nine also had the p.D674H mutation. We generated IRS1 expression vectors harboring p.S668T, p.D674H and double mutants. Expression of the mutants differentially affected insulin-induced phosphorylation of IRS1, AKT, ERK, and STAT3. Also, our mutants induced proliferation, glucose uptake, inhibited the migration of 293T cells and affected the responsiveness of the cells to cisplatin and radiation. Our results suggest that these novel mutations play a role in the phenotype of lung cancer.