cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ft4sn88.1/7.1
title: Dryad Supplementary File 7. Time-calibrated maximum-likelihood phylogeny of 1731 ant species and associated Aculeata outgroup taxa.

description: Dryad Supplementary File 7. Time-calibrated maximum-likelihood phylogeny of 1731 ant species and associated Aculeata outgroup taxa.
DOI: 10.5061/dryad.ft4sn88.1/8.1
title: Dryad Supplementary File 8. List of valid ant species derived from AntWiki.

description: Dryad Supplementary File 8. List of valid ant species derived from AntWiki.
DOI: 10.5061/dryad.g67n2n1/1
title: sampleInfo_with_rich_diversity

description: Sample metadata. Includes treatment information & richness and diversity estimates
DOI: 10.5061/dryad.jb4645r/1
title: HPV study reports

description: Data of HPV test results and cervical dysplasia
DOI: 10.5061/dryad.k5k9074/1
title: Example Data and Code from SI

description: The example code and relevant data provided in the manuscript Supplemental Information, including SIData S1, S2, S3 and S4.
DOI: 10.5061/dryad.k5k9074/2
title: Tree_Info_BAI_012118

description: Focal tree size, competitive environment, regeneration counts within 5m of focal tree, and focal tree 10yr Basal Area Increment (2003-2012) data for 9 species replicates. One .csv per species replicate, named by Transect ID (CO/MT/WA) and Species ID (PIPO = Pinus ponderosa, POTR = Populus tremuloides, ABLA=Abies lasiocarpa, TSHE = Tsuga heterophylla, PSME = Psuedotsuga menziesii). treeinfobai_Metadata_VERSION# .csv has metadata including column descriptions.
DOI: 10.5061/dryad.k5k9074/3
title: Raw_Ring_Widths_012118

description: Raw ring width data (2013-variable start date) for focal trees from nine species-replicates. "avRingWidth_Metadata_VERSION##.csv" contains metadata for data files, including column descriptions.
DOI: 10.5061/dryad.k5k9074/4
title: README

description: README for Dryad repository.
DOI: 10.5061/dryad.kf2553j/10
title: Ant Effects on Aphids R Code

description: This is the R script for analyses of the effects of ants on aphids.
DOI: 10.5061/dryad.kf2553j/11
title: Natural Enemy Abundance Data

description: The abundance of aphid natural enemies on focal Chamerion angustifolium plants in one high (East River Valley) and one low elevation valley (Spring Creek) in 2009.
DOI: 10.5061/dryad.kf2553j/9
title: Ant Effects on Aphids Data

description: Formica podzolica ant effects on experimentally established colonies of the aphid Aphis varians feeding on Chamerion angustifolium at high and low elevations.
DOI: 10.5061/dryad.kn45n49/1
title: Electronic data for kinetics study

description: The electronic raw data for kinetics experiment
DOI: 10.5061/dryad.kn45n49/2
title: Electronic data caloxin
DOI: 10.5061/dryad.kn45n49/3
title: Electronic data ORM
DOI: 10.5061/dryad.kn45n49/4
title: Electronic data ouabain
DOI: 10.5061/dryad.kn45n49/5
title: Electronic data vanadate
DOI: 10.5061/dryad.kn45n49/6
title: Electronic data verapamil
DOI: 10.5061/dryad.rc454pc/2
title: concatenated alignment_amino acids_Figure4
DOI: 10.5061/dryad.rc454pc/3
title: Figure S2_Bayesian
DOI: 10.5061/dryad.rc454pc/4
title: Figure S3_Bayesian
DOI: 10.5061/dryad.rc454pc/5
title: Figure S2_Maximum Likelihood
DOI: 10.5061/dryad.rc454pc/6
title: Figure S3_Maximum Likelihood
DOI: 10.5061/dryad.rh6h5d0/1
title: SwensonEtAl.2011.traits

description: Species level trait values for Swenson et al. 2011 PRSB study. Units for traits are given in column headers. Six letter species codes are given in first column, which are the codes consistent with those used in the Luquillo LTER site for plant species.
DOI: 10.5061/dryad.s3j9074/1
title: README

description: Contains readme and notes for all files.
DOI: 10.5061/dryad.s3j9074/2
title: files_runsims

description: Contains Matlab code (.m files) for running model simulation data used for Figures 2-4 in the paper.
DOI: 10.5061/dryad.s3j9074/3
title: output_environments

description: Contains Matlab data files (.mat files) for each type of simulation environment.
DOI: 10.5061/dryad.s3j9074/4
title: output_simulations

description: Contains Matlab data files (.mat files) for each individual-based simulation.
DOI: 10.5061/dryad.s3j9074/5
title: files_plotsims

description: Contains Matlab code (.m files) for plotting Figures 2-4 in the paper, using the above .mat files.
DOI: 10.17632/77rtm4cxpt.1
title: Data for: The Effect of Substrate Bulk Stiffness on Focal and Fibrillar Adhesion Formation in Human Abdominal Aortic Endothelial Cells

description: Data of Figure 1 and Figure 3
DOI: 10.17632/cy5xz3xv22.1
title: Data for: LATE CRETACEOUS PALEOGEOGRAPHY OF THE ANTARCTIC PENINSULA: NEW PALEOMAGNETIC POLE FROM THE JAMES ROSS BASIN

description: Raw paleomagnetic data to be opened with PaleoMag 3.1 (download from http://cires1.colorado.edu/people/jones.craig/PMag3.html). Tables with paleomagnetic directions used to calculate paleopole.
DOI: 10.17632/fd2yhvfpp2.1
title: Data for: An Analytic Computation-Driven Algorithms for Decentralized Multicore Systems

description: The main interface of Python package AdomianPy is asolve(eq, ics, kwargs), where the parameter $eq$ can be any supported ordinary or partial differential equations, ics is the set of boundary conditions for the differential equations. kwargs is optional, depending on the sophistication of our physical model. The kwargs includes func=None, n=5 type=4 and core=1, where func is a function of variables whose derivatives in that variables make up the ordinary or partial differential equations, n represents the required highest order of the truncated series solutions, type is the class number of the Adomian polynomials, core is the number of processors used for computation, and their default value is None, 5 ,4, 1 respectively. In Appendix A, we will describe the details about how-to-use of AdomianPy.
DOI: 10.17632/fgmdbys7fm.1
title: Data for: A GIS-based model to assess electric energy consumptions and usable renewable energy potential in Lazio Region at municipality scale

description: Annex 1 - plants powered by RES in the Lazio Region; Annex 2 - Electricity consumptions, RES electricity production and percentages of electricity consumption from local RES for each Lazio Municipality; Annex 3 - Additional PV power and PV surface for each Lazio Municipality
DOI: 10.17632/rky5rgxffz.1
title: Data for: Writing in Young Bilingual Children: Review of Research
DOI: 10.17632/vgdwfj2knh.1
title: Data for: 3333343

description: Contain responses of some desert plants to shock stress condition through the photosynthetic compounds behavior compared with control.
DOI: 10.17632/ykpz859fn2.1
title: Data for: Clay minerals in the Quaternary sediments of the Tulare Lake, California: Implications for climate change, weathering and erosion processes

description: Raw data in the format of .UDF which can be opened by Highscore+, dataviewer, and MacDiff.
DOI: 10.17632/zzhfmgcdh3.1
title: Data for: Hybrid Multiscale Method for Numerical Modeling of Coupled Flow and Geomechanics
DOI: 10.5061/dryad.31b9h5m/1
title: SporeParasiteCounts_KristelSanchez_DietEffectsOnParasitism

description: These are spore counts of each individual Daphnia in our experiment. Daphnia were reared in the laboratory (one individual per beaker). Individuals were exposed to following infection treatments: (a) bacterial parasite only (Pasteuria), (b) fungal parasite only (Metschnikowia), (c) both parasites at the same time, and (d) no parasites (controls).
DOI: 10.5061/dryad.31b9h5m/2
title: Host Offspring production, Length, & Mortality

description: Host fitness data taken throughout host lifetime.
DOI: 10.5061/dryad.31b9h5m/3
title: Anatoxin-a concentrations produced by Anabaena

description: Anatoxin-a concentrations from water samples belonging from water from beakers in which Daphnia were reared. Concentrations were measured using Abraxis ELISA phycotoxins kit as described by the manufacturer.
DOI: 10.5061/dryad.31b9h5m/4
title: Nodularin concentrations produced by Nodularia

description: Nodularin concentrations from water samples belonging from water from beakers in which Daphnia were reared. Concentrations were measured using Abraxis ELISA phycotoxins kit as described by the manufacturer.
DOI: 10.5061/dryad.3374429/1
title: Chinese Daphnia microsatellites-Mingbo Yin
DOI: 10.5061/dryad.44sk691/1
title: Strain data

description: Strain data collected from semilandmarks
DOI: 10.5061/dryad.44sk691/2
title: Landmarks

description: Raw shape data
DOI: 10.5061/dryad.44sk691/3
title: Specimen details

description: Details on specimens used in morphometric analyses
DOI: 10.5061/dryad.44sk691/4
title: Phylogenetic tree

description: Phylogenetic tree for morphometric analyses
DOI: 10.5061/dryad.4r683v3/1
title: JRM_JAE_2018_data from publication

description: The .zip file contains .csv data files corresponding to mosquito and West Nile virus surveillance in Atlanta, GA from 2014 to 2016. The data files are: 1) mosquito collections from catch basins in urban parks, 2) estimates of West Nile virus (WNv) infections in mosquito populations throughout Atlanta, 3) WNv antibody presence/absence in bird populations throughout Atlanta, and 4) temperature data observed in Atlanta. All data were used to estimate the vectorial capacity of mosquitoes for WNv given temperature and then analyze trends in WNv transmission as they relate to mosquito population dynamics and the vectorial capacity estimate.
DOI: 10.5061/dryad.9n5m91v/1
title: Among-cohort paternity distances and population sizes

description: This file contains data used in analyses of annual mean paternity distances (PDc) and contains posterior modes of paternity distance as well as population sizes and numbers of adult males and females for each badger cub cohort (i.e. year)
DOI: 10.5061/dryad.9n5m91v/2
title: Among-individual paternity distance and extra-group paternity

description: This file contains data used for the individual-level analyses of paternity distance (PDi) and extra-group paternity. Data were collected as part of the long-term mark-recapture study of badgers at Woodchester Park (UK). It includes unique identifiers for each badger (ID) as well as their assigned father (Sire ID) and mother (Dam ID), the natal group ID of each badger (Cub_SocG) and its father (Sire_SocG) as well as the distance from cub to paternal social group (zero if same group, measured in meters from social group main sett to social group main sett), parental ages (Dam and Sire Age) and weights (Dam and Sire weight) in kilos, and size (number of adults) and sex ratio (proprtion male) of badgers natal group (Cub_SocG size, sex ratio) and that of their father's social group ( Sire_SocG Size, Sex Ratio).
DOI: 10.5061/dryad.9n5m91v/3
title: Microsatellite genotypes and coordinate data

description: This file contains the microsatellite genotypes and social group coordinates for each badger, used to reconstruct the pedigree. Includes badger identity (ID), latitude and longitude (Lat, Lng) and genotypes at each of 22 microsatellite markers (two columns per locus, a & b denote each allele, e.g. Mel101a, Mel101b)
DOI: 10.5061/dryad.b0c6j7k/1
title: Habitat composition along dispersal route of juvenile squirrels for Turku area

description: Data describes habitat composition along juvenile squirrel dispersal paths and random paths. Landscape composition is calculated from 25m buffer along routes and is presented as percentages of the whole area of the buffer. Column "class" specifies squirrel routes (1) and random routes (2).
DOI: 10.5061/dryad.b0c6j7k/2
title: Habitat composition along dispersal route of juvenile squirrels for Southern Ostrobothnia area

description: Data describes habitat composition along juvenile squirrel dispersal paths and random paths. Landscape composition is calculated from 25m buffer along routes and is presented as percentages of the whole area of the buffer. Column "class" specifies squirrel routes (1) and random routes (2).
DOI: 10.5061/dryad.b0c6j7k/3
title: Step lengths of juvenile squirrels in Turku area

description: Data describes habitat composition along juvenile squirrel steps (landscape between two consecutive tracking observation). date_difference is the amount of days from previous location, describing the time taken for making the step. Landscape composition is calculated from 25m buffer along the steps and is presented as percentages of the whole area of the buffer.
DOI: 10.5061/dryad.b0c6j7k/4
title: Step lengths of juvenile squirrels in Southern Ostrobothnia area

description: Data describes habitat composition along juvenile squirrel steps (landscape between two consecutive tracking observation) compared to the step length. date_difference is the amount of days from previous location, describing the time taken for making the step. Landscape composition is calculated from 25m buffer along the steps and is presented as percentages of the whole area of the buffer.
DOI: 10.5061/dryad.b5gf344/1
title: Metadata - Phrases and total song detections

description: The spread sheet contains 4 different datasets each located in a separate sheet. The first sheet contains all the acoustic sound files detected with the automatic humpback whale song detector ("All_detections"). In the second sheet named "Phrases" there is a subsample of humpback whale song files which was created from the whole dataset. This subsample was used to analyse phrase occurrence and sequences of phrases. The third sheet named "AnalysedSoundFiles_subsample" contains a random subsample of sound files from the sheet "Phrases". This subsample was used to measure the average signal to noise ratio of the song units in the sound files, including the average received signal level to investigate differences in these values in analysed sound files between periods within the total study period. The forth sheet named "TotalFiles_Randosubsample" contains a random subsample of the total detected files from the sheet "All_detections". That data was used to investigate the effect of different received signal levels and SNR on the automatic acoustic detector.
DOI: 10.5061/dryad.ft4sn88.1/10.1
title: Dryad_Supplementary_File_10_richness_modifier_10nov2016.28nov2016

description: Dryad Supplementary File 10. R script used to modify richness estimates of ant genera.
DOI: 10.5061/dryad.ft4sn88.1/11.1
title: Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.

description: Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.
DOI: 10.5061/dryad.ft4sn88.1/12.1
title: Dryad Supplementary File 12. Constraint tree derived from higher-level taxonomy which was used to infer vascular plant phylogeny.

description: Dryad Supplementary File 12. Constraint tree derived from higher-level taxonomy which was used to infer vascular plant phylogeny.
DOI: 10.5061/dryad.ft4sn88.1/13.1
title: Dryad Supplementary File 13. Partition file used to infer vascular plant phylogeny.

description: Dryad Supplementary File 13. Partition file used to infer vascular plant phylogeny.
DOI: 10.5061/dryad.ft4sn88.1/14.1
title: Dryad Supplementary File 14. Constrained ML phylogeny of vascular plants.

description: Dryad Supplementary File 14. Constrained ML phylogeny of vascular plants.
DOI: 10.5061/dryad.ft4sn88.1/15.1
title: Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.

description: Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.
DOI: 10.5061/dryad.ft4sn88.1/16.1
title: Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.

description: Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.
DOI: 10.5061/dryad.ft4sn88.1/17.1
title: Dryad Supplementary File 17. Time-scaled phylogeny of plant genera based on age estimates in Magallón et al. (2013).

description: Dryad Supplementary File 17. Time-scaled phylogeny of plant genera based on age estimates in Magallón et al. (2013).
DOI: 10.5061/dryad.ft4sn88.1/9.1
title: Dryad Supplementary File 9. List of valid ant species assigned to alternate genera.

description: Dryad Supplementary File 9. List of valid ant species assigned to alternate genera.
DOI: 10.5061/dryad.g67n2n1/2
title: TaxonomyVsOTUKey

description: Taxonomic hypotheses for each OTU
DOI: 10.5061/dryad.g67n2n1/3
title: OTUtable_unrarified

description: Unrarified otu table.
DOI: 10.5061/dryad.g67n2n1/4
title: Sequences

description: Trimmed sequences output from Qiime
DOI: 10.5061/dryad.kn45n49/10
title: DPM ouabain
DOI: 10.5061/dryad.kn45n49/11
title: DPM vanadate
DOI: 10.5061/dryad.kn45n49/12
title: DPM verapamil
DOI: 10.5061/dryad.kn45n49/7
title: DPM kinetics study
DOI: 10.5061/dryad.kn45n49/8
title: DPM caloxin
DOI: 10.5061/dryad.kn45n49/9
title: DPM ORM
DOI: 10.5061/dryad.mn46cd6/1
title: Hodge-Morrey-Friedrich decomposition for WSS vector field

description: Models and source code to decompose a WSS vector field into five components: gradient, co-gradient, harmonic center, Neumann, and Dirichlet.
DOI: 10.5061/dryad.nn430n6/1
title: README
DOI: 10.6084/m9.figshare.19959958
title: Additional file 11 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 11: Table S6. The identity level of CATs in specific higher plants.
DOI: 10.6084/m9.figshare.7379531
title: Volume of motor area predicts motor impulsivity

description: Subjects' information including gender, age and behavior data.
DOI: 10.6084/m9.figshare.25152239.v1
title: Supplementary Material for: Long-Term Follow-Up of Kidney Function after Acute Liver Failure or Acute Liver Injury: A Cohort Study

description: <b><i>Introduction:</i></b> Acute liver failure (ALF) is a rare disease with high mortality. Acute kidney injury (AKI) following ALF is frequent. We assessed AKI impact on long-term kidney function among ALF survivors. <b><i>Methods:</i></b> Observational cohort study including consecutive adult (age ≥16 years) patients with ALF or acute liver injury (ALI) admitted to a Portuguese tertiary center intensive care unit (ICU) between October 2013 and February 2020. KDIGO criteria were used to define AKI and chronic kidney disease (CKD). Primary outcome was the estimated glomerular filtration rate (eGFR), defined by the Chronic Kidney Disease Epidemiology Collaboration formula, at least 1 year after index ICU admission. <b><i>Results:</i></b> Among 104 patients with ALF (<i>n</i> = 74) or ALI (<i>n</i> = 30), mean (SD) age was 43.7 (18.0) years, and 44 were male. Among all patients (<i>n</i> = 104), following adjustment for age and SOFA score, AKI during the first 7 ICU days (<i>n</i> AKI = 57 and <i>n</i> renal replacement therapy [RRT] = 32) was independently associated with all-cause mortality (adjusted HR [95% CI] 11.61 [1.49–90.34]; <i>p</i> = 0.019). Among hospital survivors with long-term kidney function available (<i>n</i> = 56), median (interquartile range) &gt;1 year eGFR was 95.3 (75.0–107.7) mL/min/1.73 m<sup>2</sup> (mean [SD] follow-up of 3.1 [1.6] years). Among these hospital survivors, following adjustment for baseline eGFR, AKI during the first 7 ICU days (<i>n</i> AKI = 19 and <i>n</i> RRT = 10) was not associated with &gt;1 year eGFR (<i>p</i> = 0.15). At least 1 year after index ICU admission, 5 patients developed CKD, none RRT-dependent. <b><i>Conclusions:</i></b> Among ALF or ALI survivors, AKI was not associated with significant long-term loss of kidney function.
DOI: 10.6084/m9.figshare.14718013.v1
title: Fat mass and obesity-associated protein (FTO) mediates signal transducer and activator of transcription 3 (STAT3)-drived resistance of breast cancer to doxorubicin

description: Excessive activation of signal transducer and activator of transcription 3 (STAT3) is implicated in breast cancer (BC) chemoresistance, but its underlying mechanism is not fully understood. There are STAT3 binding sites in fat mass and obesity-associated protein (FTO) promoter region, thus STAT3 may regulate the transcription of FTO. This study aimed to investigate the correlation between FTO and STAT3 in BC chemoresistance. Herein, FTO and STAT3 were highly expressed in doxorubicin-resistant BC (BC-DoxR) cells. CHIP assay verified the binding between STAT3 and FTO promoter in BC-DoxR cells. Dual luciferase reporter assay showed that FTO promoter activity was inhibited by S3I-201 (STAT3 inhibitor) but enhanced by epidermal growth factor (EGF, STAT3 activator) in BC-DoxR and BC cells. FTO mRNA and protein expression were suppressed by S3I-201 in BC-DoxR cells and EGF-stimulated BC cells. Notably, FTO regulated total N6-methyladenosine (m6A) levels in BC-DoxR and BC cells but could not affect STAT3 mRNA expression, indicating that FTO was not involved in the m6A modification of STAT3. However, FTO could activate STAT3 signaling in BC-DoxR and BC cells. Besides, FTO knockdown inhibited the doxorubicin resistance of BC-DoxR cells, while FTO overexpression enhanced the doxorubicin resistance and weakened the doxorubicin sensitivity of BC cells. Moreover, decreased doxorubicin resistance by STAT3 knockdown was abolished by FTO overexpression and decreased doxorubicin sensitivity by STAT3 overexpression was reversed by FTO knockdown, indicating that FTO was implicated in STAT3-mediated doxorubicin resistance and impairment of doxorubicin sensitivity of BC cells. Altogether, our findings provide a mechanism underlying BC doxorubicin resistance.
DOI: 10.4121/ea20cfbe-8ae5-41ff-80fc-955793342a9f
title: Data accompanying PhD thesis Transient Hydraulic Transport in Pipelines

description: The included data is of all time traces given as figures in the PhD thesis: Transient Hydraulic Transport in Pipelines, on flow assurance influenced by slurry dynamics.<br>This data contains data of experiments on density waves in hydraulic transport pipelines.<br>The data also includes data of experiments of the erosion of sand bed layers in a pipe, measured using Electrical Resistivity Tomography.
DOI: 10.4121/ea20cfbe-8ae5-41ff-80fc-955793342a9f.v1
title: Data accompanying PhD thesis Transient Hydraulic Transport in Pipelines

description: The included data is of all time traces given as figures in the PhD thesis: Transient Hydraulic Transport in Pipelines, on flow assurance influenced by slurry dynamics.<br>This data contains data of experiments on density waves in hydraulic transport pipelines.<br>The data also includes data of experiments of the erosion of sand bed layers in a pipe, measured using Electrical Resistivity Tomography.
DOI: 10.6084/m9.figshare.25152251
title: Supplementary Material for: Rare Delayed Ifosfamide Encephalopathy: A Case Report of Chemotherapeutic Neurotoxicity

description: <b><i>Introduction:</i></b> Neurotoxicity is a well-documented side effect of ifosfamide chemotherapy. The presentation includes hallucinations, seizures, disorientation, coma, and death. Treatment with methylene blue can shorten the duration and severity of symptoms. Ifosfamide neurotoxicity almost always happens during or shortly after drug infusion and so is usually immediately recognized. Here, we describe a case of ifosfamide neurotoxicity with onset 14 days after treatment started. <b><i>Case Presentation:</i></b> A 25-year-old woman with round cell sarcoma of the jaw presented to the emergency department with 2 days of encephalopathy and bizarre behavior. Antipsychotic medications and benzodiazepines produced no benefit. After consultation, oncology recommended methylene blue, hypothesizing that her symptoms could be a rare presentation of delayed ifosfamide-induced neurotoxicity, 14 days after first administration. After 4 days of methylene blue infusion, her functioning returned to baseline. <b><i>Conclusion:</i></b> Delayed ifosfamide-related neurotoxicity is a rare side effect of this chemotherapeutic agent and should be considered in the workup of altered mental status, even if symptoms occur after the previously accepted 5-day standard. In such patients, delayed symptomology may require extended use of methylene blue as treatment.