cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bptw9e
title: Occurrence Download

description: A dataset containing 994 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mastigodryas bifossatus (Raddi, 1820)"
 ]
}

 The dataset includes 994 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286895-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bobj0o
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myotis fortidens Miller & G.M.Allen, 1928"
 ]
}

 The dataset includes 805 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008824-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qub3n
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Helianthus smithii Heiser, 1964"
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0316215-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epthbr
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Sander lucioperca (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221115-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkkvmc
title: Occurrence Download

description: A dataset containing 7857 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia saligna (Labill.) H.L.Wendl."
 ]
}

 The dataset includes 7857 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298389-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvfveq
title: Occurrence Download

description: A dataset containing 188032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Egretta rufescens (Gmelin, 1789)"
 ]
}

 The dataset includes 188032 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062763-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hu3up6
title: Occurrence Download

description: A dataset containing 520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Soricomorpha"
 ]
}

 The dataset includes 520 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002627-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skbysv
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Parachondrostoma arrigonis (Steindachner, 1866)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 152 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221109-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gfkyw
title: Occurrence Download

description: A dataset containing 2077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis heterophylla Nees",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2077 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262472-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvje7f
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Leporinus amblyrhynchus Garavello & Britski, 1987"
 ]
}

 The dataset includes 102 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0302417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5s3sg
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Scomberomorus brasiliensis Collette, Russo & Zavala-Camin, 1978",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 64 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008825-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cs3kb
title: Occurrence Download

description: A dataset containing 233717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castanea sativa Mill.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 233717 records from 505 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298401-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16900986.v1
title: Additional file 5 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 5: Table S5. The classification of duplicate events in JHDM genes subfamily.
DOI: 10.6084/m9.figshare.16893016
title: Additional file 13 of A genome variation map provides insights into the genetics of walnut adaptation and agronomic traits

description: Additional file 13: Table S12. Phenotypic values for walnut samples collected and investigated in 2016 and in 2019.
DOI: 10.6084/m9.figshare.16900989.v1
title: Additional file 6 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 6: Table S6. Ka/Ks calculation of the paralog pairs of BpJMJ in birch.
DOI: 10.6084/m9.figshare.6938942
title: Additional file 1: of Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus

description: GO enrichment analysis of DEGs between resynthesized B. napus and its diploid parents. Three major functional categories were grouped: biological process (P), cellular component (C) and molecular function (F). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.16900998
title: Additional file 9 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 9: Table S9. The spearman correlation between the number of BpJMJ genes cis-acting elements and their expression in different tissues.
DOI: 10.6084/m9.figshare.16901074
title: Additional file 11 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 11: Table S7. Excel file with data from DNA microarray analysis of the temporal dynamics of transcriptome changes in S2R+ cells after a shift to 14 °C (M3).
DOI: 10.34740/kaggle/dsv/7595616
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.16901122.v1
title: Additional file 2 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 2: Table S2. Excel file with log2 values of the fold changes in transcript levels observed when comparing low and high temperatures by DNA microarray analysis with S2R+ cells (worksheet 1), 3′ RNA-Seq with S2R+ cells (worksheet 2), 3′ RNA-Seq with adult male flies (worksheet 3) and DNA microarray analysis with HB10 cells (worksheet 4). Expression at low temperature represents the mean observed at 11 and 14 °C, while expression at high temperature the mean at 25 and 30 °C, except for the analyses with HB10 cells where expression at 14 and 24 °C is compared.
DOI: 10.6084/m9.figshare.6939302.v1
title: Additional file 21: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

description: Agave americana transcript sequences of less than 200Â bp. (FASTA 5010 kb)
DOI: 10.6084/m9.figshare.16900810.v1
title: Additional file 1 of Development and validation of genomic and epigenomic signatures associated with tumor immune microenvironment in hepatoblastoma

description: Additional file 1. The clinical information of 20 cases of hepatoblastoma patients
DOI: 10.6084/m9.figshare.16900941.v1
title: Additional file 15 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 15: Table S15. The Newick file obtained from MEGA software for constructing the phylogenetic tree.
DOI: 10.6084/m9.figshare.16900926
title: Additional file 10 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 10: Table S10. The quantitative distribution of cis-acting elements in the promoter region of BpJMJ gene family.
DOI: 10.6084/m9.figshare.16893013.v1
title: Additional file 12 of A genome variation map provides insights into the genetics of walnut adaptation and agronomic traits

description: Additional file 12: Table S11. Genes under putatively selected genomic regions for the Tibetan walnut population identified by three selective sweep scan approaches.
DOI: 10.6084/m9.figshare.16900929
title: Additional file 11 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 11: Table S11. Expression levels (TPM) of JHDM genes with cold stress.
DOI: 10.25549/usctheses-c89-142099
title: Actaeon II
DOI: 10.34740/kaggle/dsv/7595633
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.16901131.v1
title: Additional file 5 of A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

description: Additional file 5: Table S3. Excel file with data from the analysis of temperature dependence of the S2R+ cell transcriptome by 3′ RNA-Seq.
DOI: 10.5281/zenodo.10630851
title: Experimental Repository for "Certified MaxSAT Preprocessing"

description: Experimental Repository for “Certified MaxSAT Preprocessing”

Directory structure



data: Processed data and data analysis scripts.

examples: Example instances from the MaxSAT Evaluation 2023 with augmented and kernel proofs for preprocessing.

plots: Plots generated from the processed data. Some of them were used in the paper.

raw_data: Raw data collected from the computational experiments.

source_code: Source code for the certified version of MaxPRE (maxpre), the proof checker and elaborator VeriPB (VeriPB), and the formally verified proof checker CakePB (cakepb).


How to Run?

The preprocessor MaxPRE with default settings and proof logging enabled is run using

./maxpre <input WCNF instance> -proof=<augmented proof> > <preprocessed WCNF instance>

To check and elaborate the proof with VeriPB use

veripb --wcnf --proofOutput <kernel proof> <input WCNF instance> <augmented proof> <preprocessed WCNF instance>

To check the proof with the formally verified proof checker CakePB use

./cake_pb_wcnf <input WCNF instance> <kernel proof> <preprocessed WCNF instance>
DOI: 10.5281/zenodo.10630852
title: Experimental Repository for "Certified MaxSAT Preprocessing"

description: Experimental Repository for “Certified MaxSAT Preprocessing”

Directory structure



data: Processed data and data analysis scripts.

examples: Example instances from the MaxSAT Evaluation 2023 with augmented and kernel proofs for preprocessing.

plots: Plots generated from the processed data. Some of them were used in the paper.

raw_data: Raw data collected from the computational experiments.

source_code: Source code for the certified version of MaxPRE (maxpre), the proof checker and elaborator VeriPB (VeriPB), and the formally verified proof checker CakePB (cakepb).


How to Run?

The preprocessor MaxPRE with default settings and proof logging enabled is run using

./maxpre <input WCNF instance> -proof=<augmented proof> > <preprocessed WCNF instance>

To check and elaborate the proof with VeriPB use

veripb --wcnf --proofOutput <kernel proof> <input WCNF instance> <augmented proof> <preprocessed WCNF instance>

To check the proof with the formally verified proof checker CakePB use

./cake_pb_wcnf <input WCNF instance> <kernel proof> <preprocessed WCNF instance>
DOI: 10.6084/m9.figshare.16900932.v1
title: Additional file 12 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 12: Table S12. Expression levels (TPM) of JHDM genes with salt stress.
DOI: 10.6084/m9.figshare.16900935
title: Additional file 13 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 13: Table S13. JHDM gene distribution among Birch, Maize, Arabidopsis and Rice.
DOI: 10.6084/m9.figshare.25195865.v1
title: Supplementary Material for: Transient Myopia and Ciliochoroidal Effusion following Influenza Vaccination

description: <b><i>Introduction:</i></b> The aim of the study was to report a case of ocular adverse events following influenza vaccination which involved bilateral myopic shift, ciliochoroidal effusion, and fine retinal folds in a middle-aged woman. <b><i>Case Presentation:</i></b> A 42-year-old female presented with sudden-onset painless binocular decreased distance vision. She had received a quadrivalent influenza vaccine (Influvac Tetra) injection 10 days prior, a few days after which she experienced blurred vision. Her initial uncorrected visual acuity and refraction were 20/200 and −3.00/−1.00 × 180 in the right eye, 20/100 and −3.00/−0.50 × 50 in the left eye. Intraocular pressure was within normal limits bilaterally. Anterior segment examination was significant for bilateral shallow anterior chambers (AC) and narrow iridocorneal angles with no cells or flare. Fundus examination was notable for bilateral fine chorioretinal folds radiating from the macula and bilateral low-lying choroidal effusion in the far periphery. Ultrasound biomicroscopy confirmed bilateral ciliochoroidal effusions, shallow AC, and anterior rotation of the ciliary bodies. The patient was started on oral and topical corticosteroids plus atropine and timolol eye drops after which prompt improvement was observed. Restoration of visual acuity and complete resolution of the symptoms without any further complication were observed after 2 weeks. <b><i>Conclusion:</i></b> The temporal association between the onset of the patient’s symptoms and influenza vaccination, in the absence of any pertinent medical conditions or medications, significantly implicates causality. Future research and case reports can help in corroborating this ocular adverse event attributed to influenza vaccination.
DOI: 10.5258/soton/d2793
title: Experimental data supporting the University of Southampton Doctoral Thesis "A novel sensitive coherent Raman imaging method for cellular imaging of photodynamic agents"

description: This dataset is supporting the University of Southampton Doctoral Thesis "A novel sensitive coherent Raman imaging method for cellular imaging of photodynamic agent
DOI: 10.6084/m9.figshare.16900929.v1
title: Additional file 11 of Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch

description: Additional file 11: Table S11. Expression levels (TPM) of JHDM genes with cold stress.
DOI: 10.7270/q2fn182s
title: BindingDB Entry 50046794: Influence of polar side chains modifications on the dual enkephalinase inhibitory activity and conformation of human opiorphin, a pain perception related peptide.

description: Small molecule binding data for protein Aminopeptidase N and Neprilysin, Uniprot P08473 and P15144
DOI: 10.7270/q2gt5q2q
title: BindingDB Entry 50047332: Design, synthesis and docking studies of novel dipeptidyl boronic acid proteasome inhibitors constructed fromaa- andaß-amino acids.

description: Small molecule binding data for protein 20S proteasome chymotrypsin-like, Uniprot P28074
DOI: 10.7270/q2jm2cbk
title: BindingDB Entry 50045768: CNS drug design: balancing physicochemical properties for optimal brain exposure.

description: Small molecule binding data for protein Histamine H1 receptor, Mu-type opioid receptor, Neurokinin 1 receptor, and Voltage-gated potassium channel, Uniprot P25103, P35367, P35372, and Q12809
DOI: 10.7270/q2kd20rn
title: BindingDB Entry 50046793: Negishi cross-coupling enabled synthesis of novel NAD(+)-dependent DNA ligase inhibitors and SAR development.

description: Small molecule binding data for protein DNA ligase, Uniprot Q9AIU7
DOI: 10.7270/q2mk6fs1
title: BindingDB Entry 50047331: 7-Substituted umbelliferone derivatives as androgen receptor antagonists for the potential treatment of prostate and breast cancer.

description: Small molecule binding data for protein Androgen Receptor, Uniprot P10275
DOI: 10.7270/q2nz89kj
title: BindingDB Entry 50047828: Exploring the N-Terminal Region of C-X-C Motif Chemokine 12 (CXCL12): Identification of Plasma-Stable Cyclic Peptides As Novel, Potent C-X-C Chemokine Receptor Type 4 (CXCR4) Antagonists.

description: Small molecule binding data for protein C-X-C chemokine receptor type 4 (CXCR4), Uniprot P61073
DOI: 10.7270/q2rb76hr
title: BindingDB Entry 50047330: D-Amino acid oxidase inhibitors based on the 5-hydroxy-1,2,4-triazin-6(1H)-one scaffold.

description: Small molecule binding data for protein D-Amino Acid Oxidase (DAAO), Uniprot P14920
DOI: 10.7270/q2rj4m72
title: BindingDB Entry 50046296: 4,6-Substituted-1,3,5-triazin-2(1H)-ones as monocyclic catalytic inhibitors of human DNA topoisomerase IIa targeting the ATP binding site.

description: Small molecule binding data for protein Topoisomerase II alpha (HuTopoIIα), Uniprot P11388
DOI: 10.7270/q2w37z6n
title: BindingDB Entry 50047329: Synthesis and biological activities of indolizine derivatives as alpha-7 nAChR agonists.

description: Small molecule binding data for protein Neuronal acetylcholine receptor protein alpha-7 subunit, Uniprot P36544
DOI: 10.7270/q2w66nj2
title: BindingDB Entry 50046295: Discovery of potent and selective nonplanar tankyrase inhibiting nicotinamide mimics.

description: Small molecule binding data for protein Human diphtheria toxin-like ADP-ribosyltransferase (ARTD10 or PARP10), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD2 or PARP2), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD3 or PARP3), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD4 or PARP4), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD5 or PARP5a), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD6 or PARP5b), Human diphtheria toxin-like ADP-ribosyltransferase (ARTD7 or PARP15), and poly-ADP-ribose polymerase 1 (PARP1), Uniprot O95271, P09874, Q460N3, Q53GL7, Q9H2K2, Q9UGN5, and Q9UKK3
DOI: 10.7270/q2ws8vzj
title: BindingDB Entry 50045773: Identification of novel aldose reductase inhibitors based on carboxymethylated mercaptotriazinoindole scaffold.

description: Small molecule binding data for protein Aldo-keto reductase family member 1B10 (AKR1B10), Aldose reductase, Aldose reductase (AR), and Aldose reductase-related protein 1, Uniprot O60218, P07943, P15121, and Q5RJP0
DOI: 10.7270/q2xd13n8
title: BindingDB Entry 50047826: A molecular dynamics simulation investigation of the relative stability of the cyclic peptide octreotide and its deprotonated and its (CF

description: Small molecule binding data for protein Somatostatin receptor, Uniprot P30874
DOI: 10.7270/q2154k06
title: BindingDB Entry 50047833: Discovery of novel 2',4'-dimethyl-[4,5'-bithiazol]-2-yl amino derivatives as orally bioavailable TRPV4 antagonists for the treatment of pain: Part 2.

description: Small molecule binding data for protein 1,3-beta-glucan synthase component GLS2, Transient receptor potential cation channel subfamily V member 4, and Vanilloid receptor, Uniprot P40989, Q9ERZ8, and Q9HBA0
DOI: 10.7270/q23j3fvs
title: BindingDB Entry 50047335: Synthesis of unsymmetrical monocarbonyl curcumin analogues with potent inhibition on prostaglandin E2 production in LPS-induced murine and human macrophages cell lines.

description: Small molecule binding data for protein Cyclooxygenase, Uniprot O62664 and O62698
DOI: 10.7270/q24b330p
title: BindingDB Entry 50045779: Azepinone-Containing Tetrapeptide Analogues of Melanotropin Lead to Selective hMC4R Agonists and hMC5R Antagonist.

description: Small molecule binding data for protein Melanocortin receptor 3 (MC3R), Melanocortin receptor 4, Melanocortin receptor 5 (MC5R), and Melanocyte-stimulating hormone receptor, Uniprot P32245, P33032, P41968, and Q01726
DOI: 10.7270/q24x59q6
title: BindingDB Entry 50047832: Synthesis and P1' SAR exploration of potent macrocyclic tissue factor-factor VIIa inhibitors.

description: Small molecule binding data for protein Coagulation factor III/Factor VIIa (fVIIa), Coagulation factor X/antithrombin III, Kallikrein 1, Prothrombin, and Vitamin K-dependent protein C, Uniprot P00734, P00742, P04070, P06870, P08709, and P13726
DOI: 10.7270/q27946j2
title: BindingDB Entry 50047334: Comparison of the sulfonamide inhibition profiles of thea-,ß- and¿-carbonic anhydrases from the pathogenic bacterium Vibrio cholerae.

description: Small molecule binding data for protein Carbonic anhydrase and Carbonic anhydrase 2, Uniprot P00915 and P00918
DOI: 10.7270/q27h1mb8
title: BindingDB Entry 50046300: Synthesis and Characterization of 5-Hydroxy-2-(2-phenylethyl)chromone (5-HPEC) and Its Analogues as Non-nitrogenous 5-HT2B Ligands.

description: Small molecule binding data for protein Serotonin receptor (2b and 2c), Uniprot P41595
DOI: 10.7270/q28p62gc
title: BindingDB Entry 50047831: Brain penetrant liver X receptor (LXR) modulators based on a 2,4,5,6-tetrahydropyrrolo[3,4-c]pyrazole core.

description: Small molecule binding data for protein Cytochrome P450 2C9, Cytochrome P450 2D6, Cytochrome P450 3A, and Liver X receptor (LXR alpha AND LXR beta), Uniprot P08684, P10635, P11712, P55055, and Q13133