cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/zd7-4w5-emw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lhw-8lj-1ny
title: Strandesia Stuhlmann, 1888

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x6v-cf5-akx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/pb152vr3113
title: Data for manuscript "Measurement of the magnetic octupole susceptibility of PrV2Al20"

description: Data for manuscript "Measurement of the magnetic octupole susceptibility of PrV2Al20"
DOI: 10.25740/vb564st1676
title: Stanford Graduation, Stanford CA 06-16-2024, captured by SkySat, and provided as 50cm cloud-optimized geotiff RGB & IR visualizations

description: Stanford Graduation, Stanford CA 06-16-2024, captured by SkySat. Privided as 50cm cloud-optimized geotiff RGB & IR visualizations. With and without Planet.com logo.
DOI: 10.3535/mln-vkx-gv9
title: Codonocera stellifera (Claus, 1873)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s7r-b1e-620
title: Mesocyclops aspericornis (Daday, 1906)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/dv365fv2933
title: Data for "Bottom stress and drag on a shallow coral reef"

description: Data to accompany manuscript "Discrepancy in friction velocity and drag measurements on a shallow coral reef"
DOI: 10.3535/fze-9ht-pp3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/76n-d3n-8kq
title: Heterocypris antilliensis Broodbakker, 1982

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wb8-8yg-8ms
title: Amaryllis Haswell, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29492861
title: shiyan

description: Data included N2O emission fluxes, potential denitrification rates and anaerobic ammonia oxidation rates, soil properties, abundance of denitrification and anaerobic ammonia oxidation genes (nirS, nirK, nosZI, and nrfA), as well as geographic location and time of sampling at different sampling sites during summer and winter.
DOI: 10.6084/m9.figshare.29492861.v1
title: shiyan

description: Data included N2O emission fluxes, potential denitrification rates and anaerobic ammonia oxidation rates, soil properties, abundance of denitrification and anaerobic ammonia oxidation genes (nirS, nirK, nosZI, and nrfA), as well as geographic location and time of sampling at different sampling sites during summer and winter.
DOI: 10.25740/jz111ct9401
title: Deriving the Cone Fundamentals

description: The files posted here are the 'data' files from our GitHub repository associated with the paper entitled "Deriving the cone fundamentals: a subspace intersection method".   The repository is here:  https://github.com/isetbio/isetfundamentals/wiki.  They are not our original data, but rather they are derived from scanning and papers in the literature; often quite old papers.

The publisher and Referees of our paper asked that we post these files in a long-lasting repository. We hope that proves useful.  The files remain in the GitHub repository as well.

Abstract

Two ideas, proposed by Thomas Young and James Clerk Maxwell, form the foundations of color science: (1) Three types of retinal receptors encode light under daytime conditions, and (2) color matching experiments establish the critical spectral properties of this encoding. Experimental quantification of these ideas are used in international color standards. But, for many years the field did not reach consensus on the spectral properties of the biological substrate of color matching: the spectral sensitivity of the  cone fundamentals. By combining auxiliary data (thresholds, inert pigment analyses), complex calculations, and color matching from genetically analyzed dichromats, the human cone fundamentals have now been standardized.  Here we describe a new computational method to estimate the cone fundamentals using only color matching from dichromatic observers. We show that it is not necessary to include data from trichromatic observers in the analysis or to know the primary lights used in the matching experiments. Remarkably, it is even possible to estimate the fundamentals by combining data from experiments using different, unknown primaries. We then suggest how the new method may be applied to color management in modern image systems.

This repository contains the data files used in our calculations.  The same files are available in the ISETBio GitHub repository at https://github.com/isetbio/isetfundamentals
DOI: 10.3535/ner-bt2-b3j
title: Mesocyclops aspericornis (Daday, 1906)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qca-kq6-ycs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4gc-9ef-c32
title: Cymodoce robusta Nierstrasz, 1918

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mpv-v39-xvy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/swz-vxz-jkw
title: Cilicaeopsis laevis Nierstrasz, 1931

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8sp-qxn-ld1
title: Zosime pacifica Fiers, 1991

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yfw-qee-br9
title: Zealandcyclops fenwicki Karanovic, 2005

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/hj801ns5929
title: Data for Human pathogen nucleic acids in wastewater solids from 191 wastewater treatment plants in the United States

description: We measured concentrations of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its variants, influenza A and B viruses, respiratory syncytial virus, human metapneumovirus, enterovirus D68, human parainfluenza types 1, 2, 3, 4a, and 4b in aggregate, norovirus genotype II, rotavirus, Candida auris, hepatitis A virus, human adenovirus, mpox virus, H5 influenza A virus, and pepper mild mottle virus nucleic acids in wastewater solids prospectively at 191 wastewater treatment plants in 40 states across the United States plus Washington DC. Measurements were made two to seven times per week from 1 January 2022 to 30 June 2024, depending on wastewater treatment plant staff availability. Measurements were made using droplet digital (reverse-transcription–) polymerase chain reaction (RT-PCR) following best practices for making environmental molecular biology measurements. These data can be used to better understand disease occurrence in communities contributing to the wastewater.
DOI: 10.3535/3fw-avt-j9m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x64-w7s-zp8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.wyvfcb
title: Occurrence Download

description: A dataset containing 46667 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Computarización de colecciones y adquisición de infraestructura (mobiliario) para el herbario CIIDIR-Durango"
 ]
}

 The dataset includes 46667 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103011-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25740/qb660dn2902
title: Single Female Assisted Immigrants to New South Wales (1848-1887)

description: This dataset contains data on single, female, assisted immigrants arriving in New South Wales, Australia between 1848 and 1887 compiled from shipping lists held by the NSW State Archives. It contains information on  3,768 single (unmarried), female, assisted (sponsored or subsidised) immigrants and any children travelling with them arriving in Sydney, NSW between the opening of the Female Immigration Depot in 1848 and its closure in 1887. This sample was selected by using a random number generator to choose one ship arriving in Sydney for each year of the period. Data for each woman or child was transcribed by hand from digitized copies of 'NRS 5316 Persons on bounty ships (Agent's Immigrant Lists), 1838-96' made available online by NSW State Archives.  For information about data collection, cleaning, and the variables used see the Data Schema.
DOI: 10.25740/qf850cv6453
title: Hepatitis A virus RNA concentrations in 191 Wastewater Treatment Plants Across the United States

description: This data set includes concentrations of hepatitis A RNA in wastewater solids across the united states. The data are collected three times a week, typically, from 191 plants at most from 2023-2024. The data are used in a publication that compares concentrations to case data, as well as measurements of homelessness and drug overdoses.
DOI: 10.3535/04v-ysf-fqt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d8v-cb5-jxm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/01x-eka-478
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jtk-6ev-ddw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/deb-8pm-tz1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tzk-49k-c87
title: Cypridina inermis (Müller, 1906)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/mm452ct6249
title: Data - Reef community productivity and calcification – spatial and temporal variability in recovering coral reefs

description: Coral reef Net Community Production (NCP) and Net Community Calcification (NCC) are measures of the functioning of reef ecosystems, currently under threat due to multiple anthropogenic stressors. We assessed these rates using a benthic gradient-flux approach (BEAMS system) on forereef and lagoon coral reefs that were recovering from the major 2015-2016 bleaching event in the Chagos Archipelago, Indian Ocean. Structure-from-Motion (SfM) Photogrammetry from 2019-2022 indicates significant recovery, with an increase of ~60% in hard coral cover and ~10% in rugosity between 3 to 6 years post-bleaching. Biogeochemical measurements show net heterotrophy at both reefs 3 years within the recovery, with the lagoon reef exhibiting in particular high rates. Six years into the recovery process, productivity and calcification rates at the forereef more than doubled compared with the rates 3 years prior, while calcification rates computed from SfM increased by 34%. Large day-to-day variability was documented. This included a transition in the lagoon reef from net calcification to dissolution within days, despite the long-term trend of net CaCO3 accumulation. On the forereef, an increase of 51% in heterotrophy was measured on cloudy days, while a shift to autotrophy (147% increase in NCP) and 47% higher calcification were found on sunny days that directly followed cloudy days. An internal wave event presumably led to enhanced production on one of the days on the forereef. Our findings highlight the importance of combining long-term reef health indicators with short-term measurements of reef functioning for a comprehensive understanding of reef responses to environmental changes.
DOI: 10.3535/jc1-5k5-l9c
title: Jaera (Jaera) syei Bocquet, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lma-5tj-4wh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xs1-2ej-y3h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ts-hs9-sqf
title: Stygocyathura curassavica (Stork, 1940)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fvb-v9f-2lw
title: Jaera (Jaera) syei Bocquet, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1yd-0rl-3f1
title: Stygocyathura curassavica (Stork, 1940)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3aw-emg-q59
title: Stygocyathura curassavica (Stork, 1940)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8b3-wq3-2tf
title: Salentinella angelieri Delamare-Deboutteville & Ruffo, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z3b-mgg-yds
title: Idotea Fabricius, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zqa-g39-slt
title: Stenasellus virei virei Dollfus, 1897

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/02z-202-48m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zl7-vm0-n9t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mzs-cbp-a4z
title: Heterocypris Claus, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/akc-01k-hq3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xf6-z6r-z00
title: Heterocypris Claus, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/vr531hs0228
title: Data Repository - Natural History of Shedding and Household Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Using Intensive High-Resolution Sampling

description: Deidentified data from a prospective cohort study that enrolled 60 households with index cases who tested positive for SARS-CoV-2. All household contacts and index cases were tested daily for SARS-CoV-2 via reverse transcription polymerase chain reaction (RT-PCR) using self-collected anterior nares specimens. Households were followed until all study participants in the household tested negative for SARS-CoV-2 for seven consecutive days. We collected sex, age, race/ethnicity, comorbidities, and relationship to index case for secondary contacts.
DOI: 10.25740/xq706xv7995
title: Source Data for: Nanoscale Architecture of Synaptic Vesicles and Scaffolding Complexes Revealed by Cryo-Electron Tomography

description: The spatial distribution of proteins and their arrangement within the cellular ultrastructure regulates the opening of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors in response to glutamate release at the synapse. Fluorescence microscopy imaging revealed that the postsynaptic density (PSD) and scaffolding proteins in the presynaptic active zone (AZ) align across the synapse to form a trans-synaptic “nanocolumn”, but the relation to synaptic vesicle release sites is uncertain. Here, we employ focused-ion beam (FIB) milling and cryo-electron tomography (cryo-ET) to image synapses under near-native conditions. Improved image contrast, enabled by FIB-milling, allows simultaneous visualization of supramolecular nanoclusters within the AZ and PSD and synaptic vesicles. Surprisingly, membrane-proximal synaptic vesicles, which fuse to release glutamate, are not preferentially aligned with AZ or PSD nanoclusters. These synaptic vesicles are linked to the membrane by peripheral protein densities, often consistent in size and shape with Munc13, as well as globular densities bridging the synaptic vesicle and plasma membrane, consistent with prefusion complexes of SNAREs, synaptotagmins, and complexin. Monte Carlo simulations of synaptic transmission events using bio-realistic models guided by our tomograms predict that clustering AMPARs within PSD nanoclusters increases the variability of the postsynaptic response but not its average amplitude. Together, our data support a model in which synaptic strength is tuned at the level of single vesicles by the spatial relationship between scaffolding nanoclusters and single synaptic vesicle fusion sites.
DOI: 10.3535/4jg-0xw-zmt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zw-qnx-kyv
title: Thermocyclops decipiens Kiefer, 1929

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fjf-w8m-w4t
title: Sapphirina iris Dana, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1de-dd1-d6y
title: Heterocypris Claus, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/50k-bnc-nzv
title: Rotundiclipeus canariensis Huys, 1988

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1xc-lrp-lym
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4d4-peb-kys
title: Ilyocryptus cuneatus Štifter, 1988

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/sv100pn2892
title: 0004_H_AO_SVD

description: Model of the aorta of a 17 year-old girl with a single ventricle defect that has undergone the Fontan procedure without aortic reconstruction. Simulation results are available. This model can be found in the Vascular Model Repository.
DOI: 10.25740/zm209tn5260
title: Stinson Beach, CA subterranean estuary microbiome analysis

description: Subterranean estuaries (STEs) are critically important ecosystems at the interface of meteoric groundwater and subsurface seawater that are threatened by sea level rise. To characterize the influences of tides and waves on the STE microbial community, we collected porewater samples from a high-energy beach STE (Stinson Beach, CA, USA) over the two-week neap-spring tidal transition during a wet and a dry season. The microbial community, analyzed by 16S rRNA gene (V4) amplicon sequencing, clustered according to consistent features found in STEs: shallow, nitrate-enriched fresher groundwater and deep, ammonia-enriched saltier groundwater with a distinct transition zone between the layers, as well as an intertidal saltwater cell near the surf zone. The porewater community harbored relatively abundant Proteobacteria, Verrucomicrobiota, and Bacteroidota, as well as members of the archaeal DPANN and bacterial Candidate Phyla Radiation groups. The taxa present were inferred to have a broad variety of aerobic and anaerobic metabolic capabilities. Salinity, dissolved inorganic nitrogen, and dissolved organics were important environmental correlates with microbial community structure. While tidal conditions were not associated with microbial community composition, a wave overtopping event did significantly impact the beach microbiome. Our results elucidate the unique dynamics of an STE microbiome as a baseline for environmental change.
DOI: 10.3535/8q3-5hs-5se
title: Jaera (Jaera) syei Bocquet, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vwe-sn8-4hf
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/zv353hh1281
title: 0007_H_AO_H

description: Model of the aorta of a 13 year-old boy that is healthy and was part of the control group of an experiment. Simulation results are available. This model can be found in the Vascular Model Repository.
DOI: 10.3535/bya-sd8-1h1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/ff672rt7847
title: 0005_H_AO_SVD

description: Model of the aorta of a 27 year-old woman with a single ventricle defect that has undergone the Fontan procedure without aortic reconstruction. Simulation results are available. This model can be found in the Vascular Model Repository.
DOI: 10.3535/9d7-7cy-mcw
title: Jaera (Jaera) syei Bocquet, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mh4-3g8-afg
title: Hartiella dudichi (Klie, 1938) Danielopol, 1971

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60q-g9p-zc8
title: Heterocypris antilliensis Broodbakker, 1982

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tst-qev-a55
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wzs-atv-8er
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8j6-q3p-pc2
title: Onisimus barentsi (Stebbing, 1894)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fl9-f7a-xbr
title: Proasellus meridianus meridianus (Racovitza, 1919)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jl7-7qb-vwa
title: Jaera (Jaera) nordmanni balaerica Margalef, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aem-qa4-jz6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qzp-p5k-n4m
title: Porcellio scaber scaber Latreille, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0e5-xpg-vl9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wb7-6jf-kb1
title: Jaera (Jaera) Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7yd-91c-khy
title: Idotea chelipes (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ke8-slh-5wr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q0m-h13-h3g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g9f-5lw-1h5
title: Proasellus coxalis coxalis (Dollfus, 1892)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kxj-9b6-twm
title: Livoneca Leach, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/08l-asz-zt3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7lx-kl2-bdw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bt-z0t-l5c
title: Jaera (Jaera) Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t00-1e1-1bc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.