cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc54lsn
title: CCDC 153381: Experimental Crystal Structure Determination

description: Related Article: M.Cindric, N.Strukan, T.Kajfez, G.Giester, B.Kamenar|2001|Z.Anorg.Allg.Chem.|627|2604|doi:10.1002/1521-3749(200112)627:12<2604::AID-ZAAC2604>3.0.CO;2-U
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.60712/si-id322371.1
title: StrainInfo SI-ID 322371.1

description: StrainInfo dataset 322371 about a strain of Xanthomonas citri pv. mangiferaeindicae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322372.1
title: StrainInfo SI-ID 322372.1

description: StrainInfo dataset 322372 about a strain of Xanthomonas campestris pv. passiflorae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322373.1
title: StrainInfo SI-ID 322373.1

description: StrainInfo dataset 322373 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322457.1
title: StrainInfo SI-ID 322457.1

description: StrainInfo dataset 322457 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.2tgz5x
title: Occurrence Download

description: A dataset containing 118790 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psilorhinus morio (Wagler, 1829)"
 ]
}

 The dataset includes 118790 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030002-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id322458.1
title: StrainInfo SI-ID 322458.1

description: StrainInfo dataset 322458 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322459.1
title: StrainInfo SI-ID 322459.1

description: StrainInfo dataset 322459 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322521.1
title: StrainInfo SI-ID 322521.1

description: StrainInfo dataset 322521 about a strain of Xanthomonas populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322522.1
title: StrainInfo SI-ID 322522.1

description: StrainInfo dataset 322522 about a strain of Xanthomonas populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322523.1
title: StrainInfo SI-ID 322523.1

description: StrainInfo dataset 322523 about a strain of Xanthomonas populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.4b8yv7
title: Occurrence Download

description: A dataset containing 13785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.05939 50.42916,3.05919 50.4318,3.05859 50.43442,3.05759 50.43698,3.0562 50.43947,3.05443 50.44186,3.0523 50.44413,3.04984 50.44625,3.04706 50.44821,3.044 50.44998,3.04067 50.45156,3.03712 50.45292,3.03338 50.45405,3.02949 50.45494,3.02547 50.45559,3.02138 50.45597,3.01724 50.4561,3.01311 50.45598,3.00901 50.45559,3.005 50.45495,3.0011 50.45406,2.99736 50.45293,2.99381 50.45157,2.99048 50.44999,2.98742 50.44822,2.98464 50.44626,2.98217 50.44414,2.98005 50.44187,2.97828 50.43948,2.97688 50.43699,2.97588 50.43443,2.97527 50.43181,2.97507 50.42917,2.97528 50.42653,2.97589 50.42392,2.97689 50.42136,2.97829 50.41887,2.98006 50.41648,2.98218 50.41421,2.98465 50.41209,2.98743 50.41013,2.99049 50.40836,2.99381 50.40678,2.99736 50.40542,3.0011 50.40429,3.00499 50.4034,3.009 50.40276,3.01309 50.40237,3.01722 50.40224,3.02135 50.40237,3.02544 50.40276,3.02946 50.4034,3.03335 50.40429,3.03709 50.40542,3.04064 50.40678,3.04396 50.40835,3.04703 50.41012,3.04981 50.41208,3.05227 50.4142,3.0544 50.41647,3.05617 50.41886,3.05757 50.42134,3.05858 50.42391,3.05919 50.42652,3.05939 50.42916))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13785 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085305-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id322374.1
title: StrainInfo SI-ID 322374.1

description: StrainInfo dataset 322374 about a strain of Xanthomonas vesicatoria. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322375.1
title: StrainInfo SI-ID 322375.1

description: StrainInfo dataset 322375 about a strain of Xanthomonas euvesicatoria. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322376.1
title: StrainInfo SI-ID 322376.1

description: StrainInfo dataset 322376 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322377.1
title: StrainInfo SI-ID 322377.1

description: StrainInfo dataset 322377 about a strain of Xanthomonas citri pv. viticola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322460.1
title: StrainInfo SI-ID 322460.1

description: StrainInfo dataset 322460 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322461.1
title: StrainInfo SI-ID 322461.1

description: StrainInfo dataset 322461 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322462.1
title: StrainInfo SI-ID 322462.1

description: StrainInfo dataset 322462 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.567jbg
title: Occurrence Download

description: A dataset containing 584341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Betula pendula Roth",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 584341 records from 1009 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0345888-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id322463.1
title: StrainInfo SI-ID 322463.1

description: StrainInfo dataset 322463 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322524.1
title: StrainInfo SI-ID 322524.1

description: StrainInfo dataset 322524 about a strain of Xanthomonas populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322525.1
title: StrainInfo SI-ID 322525.1

description: StrainInfo dataset 322525 about a strain of Xanthomonas populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.0ek3en
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypsugo anchietae (Seabra, 1900)"
 ]
}

 The dataset includes 159 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034319-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id322527.1
title: StrainInfo SI-ID 322527.1

description: StrainInfo dataset 322527 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322528.1
title: StrainInfo SI-ID 322528.1

description: StrainInfo dataset 322528 about a strain of Ralstonia pseudosolanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322378.1
title: StrainInfo SI-ID 322378.1

description: StrainInfo dataset 322378 about a strain of Xanthomonas citri pv. viticola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322379.1
title: StrainInfo SI-ID 322379.1

description: StrainInfo dataset 322379 about a strain of Xanthomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.prakmo
title: Occurrence Download

description: A dataset containing 55505 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dacnis cayana (Linnaeus, 1766)"
 ]
}

 The dataset includes 55505 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032802-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id322380.1
title: StrainInfo SI-ID 322380.1

description: StrainInfo dataset 322380 about a strain of Xanthomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322381.1
title: StrainInfo SI-ID 322381.1

description: StrainInfo dataset 322381 about a strain of Xanthomonas arboricola pv. populi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322464.1
title: StrainInfo SI-ID 322464.1

description: StrainInfo dataset 322464 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322465.1
title: StrainInfo SI-ID 322465.1

description: StrainInfo dataset 322465 about a strain of Xanthomonas arboricola pv. pruni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id322466.1
title: StrainInfo SI-ID 322466.1

description: StrainInfo dataset 322466 about a strain of Xanthomonas hortorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.gns9it
title: Occurrence Download

description: A dataset containing 43082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2006-2019",
 "HasCoordinate is true",
 "TaxonKey is Myriophyllum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43082 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029715-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8h6bh
title: Occurrence Download

description: A dataset containing 52293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 52293 records from 269 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018195-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112842165
title: Persepolis Fortification Elamite Tablet 1290.101, Fort 1290.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 1290.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Broken left edge, upper right corner. Crack on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc112045155
title: Cuneiform Tablet 1913.14.0169, Spurlock 1913.14.0169

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0169; CDLI P420550 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Brownish Pink (5YR 8/3) ❧ [Physical Object Note:] 7.5 x 4.5 x 2.3 cm (82g) ❧ [Physical Object Note:] Seal impressions
DOI: 10.25549/inscriptifact-ouc112045198
title: Cuneiform Tablet 1913.14.0169, Spurlock 1913.14.0169

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0169; CDLI P420550 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Brownish Pink (5YR 8/3) ❧ [Physical Object Note:] 7.5 x 4.5 x 2.3 cm (82g) ❧ [Physical Object Note:] Seal impressions
DOI: 10.15468/dl.cmhccq
title: Occurrence Download

description: A dataset listing the 181583 species recorded in GBIF matching the query:
{
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset's 181583 records were derived from 4325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100695-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zy8d9
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glebionis segetum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038682-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp29e8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glebionis segetum",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038684-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubajtd
title: Occurrence Download

description: A dataset containing 2348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colophospermum mopane"
 ]
}

 The dataset includes 2348 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038685-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15395353
title: tdap-vaccinee-db and tdap-monoclonal-db

description: Data from "Is the vaccination-induced B cell receptor repertoire predictable?" - Richardson, Willemsen, Shinde, Nielsen & Peters (2025).

Processed Tdap-expanded and baseline BCR VH clonotypes from 19 subjects (tdap-vaccinee-db); label = expanded (1) or baseline (0).

Processed VH monoclonal antibody database (tdap-monoclonal-db). Label = TT or PT mAbs (label = TT or PT), CoV/EBOV/Miscellaneous (0).

All TT or PT mAb sequences from literature (tt_pt_monoclonal). 

Read README.md for clarification of column names.
DOI: 10.5281/zenodo.16410082
title: tdap-vaccinee-db and tdap-monoclonal-db

description: Data from "Is the vaccination-induced B cell receptor repertoire predictable?" - Richardson, Willemsen, Shinde, Nielsen & Peters (2025).

Processed Tdap-expanded and baseline BCR VH clonotypes from 19 subjects (tdap-vaccinee-db); label = expanded (1) or baseline (0).

Processed VH monoclonal antibody database (tdap-monoclonal-db). Label = TT or PT mAbs (label = TT or PT), CoV/EBOV/Miscellaneous (0).

All TT or PT mAb sequences from literature (tt_pt_monoclonal). 

Read README.md for clarification of column names.
DOI: 10.5281/zenodo.16410604
title: MindScope-AI

description: # 🌿 MindScope: AI-Driven Digital Mindfulness for Chronic Care

**MindScope** is a video-based digital mindfulness framework designed to enhance engagement and attention in chronic disease management. It combines cognitive modeling, machine learning, and real-time nudging to deliver personalized, context-aware mindfulness support in primary care settings.

## 🧠 Motivation

Managing chronic conditions such as diabetes and hypertension often requires sustained behavioral change. However, traditional mindfulness interventions face challenges like poor engagement, limited personalization, and high dropout rates. **MindScope** addresses these gaps by:

- Detecting user attention in real-time from digital signals- Delivering tailored reflective prompts using counterfactual reasoning- Embedding mindfulness seamlessly into digital health workflows

## 💡 Core Components

### 1. Attentive Interaction State Encoder (AISE)

A deep learning encoder that models user attentional states using multimodal digital interaction signals:- Action, context, and physiological input- Temporal embedding + attention-weighted modeling- Robust latent state stabilization with volatility-aware noise injection

📍 *Diagram and architecture explained on page 6, Figure 1 of the paper*

### 2. Reflective Nudging via Temporal Counterfactuals (RNTC)

A reinforcement-learning-inspired mechanism to:- Predict when users are cognitively drifting- Simulate alternative intervention outcomes (counterfactuals)- Generate minimal but effective nudges using utility-based policies

📍 *Illustrated in Figure 3 on page 8*

## 📊 Experimental Results

MindScope outperforms state-of-the-art video understanding models (e.g., CLIP, TimeSformer, Uniformer) across four NER datasets in terms of:

| Dataset        | F1 Score | AUC     ||----------------|----------|---------|| CoNLL-2003     | 90.15%   | 93.06%  || OntoNotes 5.0  | 89.84%   | 93.28%  || WNUT-17        | 87.15%   | 90.28%  || GMB            | 88.12%   | 91.03%  |

📍 *See Tables 1–2 on pages 11–12*

## 🔍 Ablation Study

To validate component contributions:- Removing **AISE multimodal representation** causes a ~2.5% F1 drop- Excluding **contextual attention** reduces recall- Without **latent state stabilization**, robustness decreases in noisy settings

📍 *See Tables 3–4 on page 12*

## 🛠️ Installation

```bashgit clone https://github.com/yourname/mindscope-mindfulnesscd mindscope-mindfulnesspip install -r requirements.txt