cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.z612jm6h4
title: The natural capital of seagrass beds in the Caribbean: evaluating their ecosystem services and blue carbon trade potential

description: Seagrass beds provide tremendous services to society, including the
 storage of carbon, with important implications for climate change
 mitigation. Prioritizing conservation of this valuable natural capital is
 of global significance, and including seagrass beds in global carbon
 markets through projects that minimize loss, increase area, or restore
 degraded areas represents a mechanism towards this end. Using newly
 available Caribbean seagrass distribution data, we estimated carbon
 storage in the region and calculated economic valuations of total
 ecosystem services and carbon storage. We estimated the 88,170 km2 of
 seagrass in the Caribbean stores 1,337.8 (360.5–2335.0, minimum and
 maximum estimates, respectively) Tg carbon. The value of these seagrass
 ecosystems in terms of total ecosystem services and carbon alone was
 estimated to be $255 billion yr-1 and $88.3 billion, respectively,
 highlighting their potential monetary importance for the region. Our
 results show that Caribbean seagrass beds are globally substantial pools
 of carbon, and our findings underscore the importance of such evaluation
 schemes to promote urgently needed conservation of these highly threatened
 and globally important ecosystems.
DOI: 10.5061/dryad.573n5tbcs
title: Northern Yellowstone Elk survival and competing risks

description: Prey vulnerability to predation can vary by life history stage, and prey
 population stage structure determines the strength a predator species
 wields on their community. Prey population stage structure can vary over
 time, yet little is known about how temporal change in prey stage
 structure influences predator-prey interactions. We used data of wolves
 hunting adult female elk in Yellowstone National Park to demonstrate that
 stage-selective wolf predation of old individuals  (&gt;11
 years old) was more additive than wolf predation of young individuals
 (2–11 years old). Additive predation of older elk coupled with an aging
 female elk population increased the strength of wolf predation over time.
 When vulnerable prey comprise an increasing proportion of a population,
 their early demise may decrease population growth. Accounting for temporal
 variation in predation risk across a prey population is therefore critical
 to understanding the community-level consequences of predator-prey
 interactions.
description: Please refer to the corresponding publication for methods of elk
 telemetry, determination of cause of mortality, elk age structure, and
 recovery of wolf-killed elk.  Elk telemetry and
 survival data were processed into the format required by R package
 <em>Flexsurv</em> for competing risk analysis. Elk have
 records for each 'elk year' they were observed during the study
 period (2000–2009, 2011–2016), where 'elk year' runs from June
 to May. Start and stop times refer to their ages at the beginning and end
 of each year. The start age is mid-year if they were captured and marked
 that year, the stop age is at the end of the year unless they died, their
 collar failed, or they went missing. For elk marked as yearlings, we
 excluded their yearling year of data.  Elk telemetry
 and survival data were processed into the format required by R package
 <em>Wild1</em> for CIF analysis. These elk are the same as
 those in the other dataset, but the format was changed. Here time refers
 to days of the year rather than elk age.  Please see
 the README file for additional information.
DOI: 10.5061/dryad.brv15dvdz
title: Data for: Age and an obesogenic diet affect mouse behaviour in a sex-dependent manner

description: Obesity is rising globally and is associated with neurodevelopmental and
 psychiatric disorders among children, adolescents, and young adults.
 Whether obesity is the cause or the consequence of these disorders remains
 unclear. To examine the behavioural effects of obesity systematically,
 locomotion, anxiety, and social behaviour were assessed in male and female
 C57Bl/6J mice using the open field, elevated plus maze and social
 preference task. First, the effects of age and sex were examined in
 control mice, before investigating post-weaning consumption of a high fat,
 high sugar diet commonly consumed in human populations with high rates of
 obesity. In the open field and elevated plus maze, locomotor activity and
 anxiety-related behaviours reduced with aging in both sexes, but with
 different sex-specific profiles. The high fat, high sugar diet reduced
 food and calorie intake and increased body mass and fat deposition in both
 sexes. In the open field, both male and female mice on the obesogenic diet
 showed reduced locomotion, whereas, in the elevated plus maze, only
 females on the obesogenic diet displayed reduced anxiety-related
 behaviours. Both male and female mice on the obesogenic diet had a
 significantly higher social preference index than controls. In conclusion,
 the findings demonstrate that the behavioural effects of age and of
 diet-induced obesity all depend on the sex of the mouse. This emphasises
 the importance of considering the age of the animal and including both
 sexes when assessing behavioural phenotypes arising from dietary
 manipulations.
description: Behavioural data from the open field, elevated plus maze and
 social preference tasks was collected using a ceiling mounted webcam over
 the testing apparatus followed by manual experimenter counting, blind to
 cohort where possible. Food, calorie and protein intake
 for a cage of mice was determined by measuring food weekly over a 24 hour
 period and expressed as intake per day per gram of the total weight of
 mice in each cage. Body weight of individual mice was
 monitored weekly from weaning to the end of the experimental
 period.  A subset of the females and males in the two
 diet groups were used to quantify total body fat and lean mass by Dual
 Energy X-ray Absorptiometry (DEXA) scanning (Lunar PIXImus densitometer;
 GE Healthcare) and/or to measure the weights of the individual fat
 deposits and body organs. All data sets were added to
 an Excel spreadsheet and statistical comparisons between groups were made
 using GraphPad Prism (version 9).
DOI: 10.15468/dl.rvhyf7
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Pl@ntNet observations",
 "License is CC-BY 4.0",
 "PublishingOrg is da86174a-a605-43a4-a5e8-53d484152cd3",
 "TaxonKey is Cupressus sempervirens"
 ]
}

 The dataset includes 1300 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003534-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7sqv9s4xg
title: The trait-mediated trade-off between growth and survival depends on tree sizes and environmental conditions

description: Interspecific relationships between growth and survival are critical
 determinants of tree species diversity maintenance in forests. The
 trade-offs between growth and survival in co-occurring tree species are
 believed to arise along a continuum of life-history strategies. For
 example, co-occurring species range from those that grow slowly and
 survive well in resource-poor environments to those that grow quickly but
 have low survival rates in resource-rich environments. However,
 uncertainties remain regarding how growth-survival trade-offs are related
 to species traits, tree sizes, or environmental conditions. We examined
 how the relationships between species traits and growth–survival
 relationships shift in response to changes in stem sizes and across census
 periods with different climate conditions (frequency of strong winds,
 drought intensity) across 45 co-occurring tree species based on 23 years
 of growth and survival records in a warm temperate rain forest on
 Yakushima Island, Japan. We developed hierarchical Bayesian models of
 relative growth and survival rates, including leaf traits, wood density,
 and 95-percentile maximum stem diameter as explanatory variables. We
 tested the relationships between estimated trait-mediated growth–survival
 relationships and the intensities of climate events during five census
 periods. Each trait’s effects on growth–survival relationships differed
 across the five census periods in response to climate conditions.
 Interspecific growth–survival relationships affected by a single trait
 axis for leaves or wood tended to be negative. In contrast, those affected
 by the maximum stem diameter tended to be positive. Such
 trends increased with more frequent strong winds or more intense
 droughts. The single-trait effects on growth–survival relationships were
 stronger for smaller sizes than for larger sizes. For all traits combined,
 we found a significant growth–survival trade-off only for small-sized
 stems in three of five census periods. Synthesis: Our results indicate
 that the effect of species traits on the growth–survival relationships
 depended on tree sizes, the census periods, or both in response to the
 frequency or intensity of climate events. We argue the importance of
 incorporating spatial and temporal variations in environmental conditions
 into long-term data from tree census to predict forest dynamics.
DOI: 10.15468/dl.xmr3vs
title: Occurrence Download

description: A dataset containing 3482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Russian Federation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Chronicle of Nature - Phenology of Plants of FSE Zapovednoe Podlemorye, Local floras of Russia: records from literature)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "TaxonKey is one of (Achillea impatiens, Achillea asiatica)"
 ]
}

 The dataset includes 3482 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003532-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60905/hiqzzd
title: La ��ltima semana de julio volver��a a abrirse la U de A

description: &lt;p&gt;Noticia que hace menci��n de a las reuniones y posibles medidas de reapertura de la universidad luego de las jornadas de protesta en d��as anteriores. menciona el reporte frente a la terminaci��n del semestre y el inicio de un pr��ximo, adem��s de los arreglos que se deben hacer en el campus tras los desmanes. se registra adem��s la ocupaci��n y vigilancia del ejercito en las instalaciones del campus.&lt;/p&gt;
description: CONTEXTO DE LA NOTICIA: Reorganizaci��n de la rama judicial en Colombia, visitas de Rockefeller en Latinoam��rica, violencia racial en singapur, giras pablo vi, protestas estudiantiles en Venezuela y Espa��a, comunismo en Francia, conservadurismo antioque��o y sus crisis.
DOI: 10.15468/dl.fm246v
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sagmatias cruciger"
 ]
}

 The dataset includes 79 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003535-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.6wwpzgn40
title: Divergent east-west lineages in an Australian fruit fly, (Bactrocera jarvisi), associated with the Carpentaria Basin divide

description: Bactrocera jarvisi is an endemic Australian fruit fly species (Diptera:
 Tephritidae). It occurs commonly across tropical and subtropical coastal
 Australia, from far-northern Western Australia, across the ‘Top End’ of
 the Northern Territory, and then down the Queensland east coast. 
 Across this range, its distribution crosses several well-documented
 biogeographic barriers.  In order to better understand factors
 leading to the divergence of Australian fruit fly lineages, we carried out
 a population genetic study of B. jarvisi from across its range using
 genome-wide SNP analysis, utilising adult specimens gained from trapping
 and fruit rearing.  Populations from the Northern Territory (NT)
 and Western Australia were genetically similar to each other but divergent
 from the genetically uniform east-coast (=Queensland, QLD) population.
 Phylogenetic analysis demonstrated that the NT population derived from the
 QLD population. We infer a role for the Carpentaria Basin as a
 biogeographic barrier restricting east-west gene flow.  The QLD
 populations were largely panmictic and recognised east-coast biogeographic
 barriers play no part in north-south population structuring. 
 While the NT and QLD populations were genetically distinct, there was
 evidence for the historically recent translocation of flies from each
 region to the other.  Flies reared from different host fruits
 collected in the same location showed no genetic divergence. 
 While a role for the Carpentaria Basin as a barrier to gene flow for
 Australian fruit flies agrees with existing work on the related B. tryoni,
 the reason(s) for population panmixia for B. jarvisi (and B. tryoni) over
 the entire Queensland east coast, a linear north-south distance of
 &gt;2000km, remains unknown.
description: For DNA extractions, either the head and legs or the full body
 without the abdomen was used depending on the samples’ freshness and
 quality. DNA was extracted using QIAGEN DNeasy® Blood & Tissue Kit
 following the manufacturer’s protocol with only slight modifications
 (i.e., overnight incubation of the tissue with lysis buffer and proteinase
 K at 36 0C and eluting the genomic DNA into 30–50 µL of elution buffer
 for more concentrated DNA extraction. DNA samples were screened for
 quality and quantity, using both gel electrophoresis and Qubit assay, and
 then sent to Diversity Arrays Technology Pty Ltd, Canberra (DArT P/L), for
 DArTseq high-density genotyping. The restriction enzyme combination,
 PstI/SphI, was used by DArT P/L for the current <em>B.
 jarvisi</em> dataset, and the fragments (up to 90bp) were sequenced
 on an Illumina Hiseq2500 as single end reads.
DOI: 10.5061/dryad.2fqz612tx
title: Dataset for: Fifty years of research on questionable research practices in science: Quantitative analysis of co-citation patterns

description: Questionable research practices (QRPs) have been the focus of the
 scientific community amid greater scrutiny and evidence highlighting
 issues with replicability across many fields of science. To capture the
 most impactful publications and the main thematic domains in the
 literature on QRPs, this study uses a document co-citation analysis. The
 analysis was conducted on a sample of 341 documents that covered the past
 50 years of research in QRPs. Nine major thematic clusters emerged.
 Statistical reporting and statistical power emerged as key areas of
 research, where systemic-level factors in how research is conducted are
 consistently raised as the precipitating factors for QRPs. There is also
 an encouraging shift in the focus of research into open science practices
 designed to address engagement in QRPs. Such a shift is indicative of the
 growing momentum of the open science movement, and more research can be
 conducted on how these practices are employed on the ground and how their
 uptake by researchers can be further promoted. However, the results
 suggest that, while pre-registration and registered reports receive the
 most research interest, less attention has been paid to other open science
 practices (e.g., data and methods sharing).
description: All data were downloaded from the Scopus platform on 6 February
 2023. Data were retrieved using the string TITLE-ABS-KEY(``questionable
 research practice*"). The files contains information for 341
 documents published between 1974–2023.
description: The file in "QRP.ris" format can be analyzed using
 CiteSpace software. The file "QRP.bib"
 contains the dataset and can be analyzed using a statistical software,
 such as R. The R script used to analyze the .bib file
 is also provided as "BibliometricAnalysisQRP.md".
DOI: 10.5061/dryad.2bvq83bvx
title: Habitat preferences and functional traits drive longevity in Himalayan high-mountain plants

description: Plant lifespan has important evolutionary, physiological, and ecological
 implications related to population persistence, community stability, and
 resilience to ongoing environmental change impacts. Although biologists
 have long been puzzled over the extraordinary variation in plant lifespan
 and its causes, our understanding of interspecific variability in plant
 lifespan and the key internal and external factors influencing longevity
 remains limited. Here, we demonstrate the concurrent impacts of
 environmental, morphological, physiological, and anatomical constraints on
 interspecific variation in longevity among &gt;300 vascular dicot
 plant species naturally occurring at an elevation gradient (2800-6150 m)
 in the western Himalayas. First, we show that plant longevity (ranging
 from 1 to 100 years) is largely related to species' habitat
 preferences. Ecologically stressful habitats such as alpine and subnival
 host long-lived species, while productive ruderal and wetland habitats
 contain a higher proportion of shorter-lived species. Second, longevity is
 influenced by growth form with monocarpic forbs having the shortest
 lifespan and woody shrubs having the highest. Small-statured cushion
 plants with compact canopies and deep roots, most found on cold and
 infertile alpine and subnival soils, had a higher chance of achieving
 longevity. Third, plant traits reflecting plant adaptations to stress and
 disturbance affect interspecific differences in plant longevity. We show
 that longevity and growth are negatively correlated. Slow-growing species
 are those that have a higher chance of reaching a high age. Finally,
 higher longevity was associated with high leaf carbon and phosphorus, low
 root phosphorus and nitrogen, and with large bark-xylem ratio. Our
 findings suggest that plant longevity in high elevation is intricately
 determined by a combination of habitat preferences and growth form, as
 well as the plant growth rate and physiological processes.
DOI: 10.5061/dryad.05qfttf7t
title: Data from: Listening to tropical forest soils

description: Passive acoustic monitoring (PAM) has proven to be an effective tool for
 monitoring biotic soundscapes in the marine, terrestrial, and aquatic
 realms. Recently it has been suggested that it could also be an effective
 method for monitoring soil fauna, but has so far been used in only four
 studies in temperate and polar regions. We present the first study of soil
 soundscapes in tropical forests, using a novel analytical pipeline
 allowing for the use of in-situ recording of soundscapes with minimal soil
 disturbance. We found significant differences in soil soundscapes between
 burnt and unburnt forests and the first indications of a diel cycle in
 soil soundscapes. These promising results and methodological advances
 highlight the potential of PAM for large-scale and long-term monitoring of
 soil biodiversity. We use the results to discuss research priorities,
 including relating soil biophony to biodiversity, community structure and
 ecosystem functioning, and the use of appropriate hardware and analytical
 techniques.
description: We collected soil acoustic data in three
 municipalities: Santarém, Belterra and Mojuí dos Campos, in the state of
 Pará, (eastern Brazilian Amazon latitude ~ −3.046, longitude −54.947 WGS
 84). We sampled seven sites unaffected by fire and three sites in which
 the forest has been burnt in 2015/2016. All sites were separated by a
 minimum distance of 2 km. Data were collected between 21 November and 06
 December 2023. This period is the onset of the rainy season when soil
 biotic activity is likely at its highest although we avoided recording
 during periods of rain.  Recordings
 were made at each point for 30 minutes between 09:20 and 14:00, with a
 minimum buffer of 3 minutes at the start and end of each recording to
 avoid including footsteps or other anthropogenic sounds associated with
 researcher presence. Recordings were made using a Zoom H5n recorder with
 JrF C-series Pro contact microphones and XLR impedance adapters in both
 the left and right channels. The input levels were set to the maximum
 (10). We chose to use contact microphones, as they are much less sensitive
 to above-ground sounds, and therefore reducing the likelihood of recording
 above-ground sounds that may obscure the soil soundscape pattern.
 Microphones were placed at the furthest distance apart the cables would
 allow, approximately 5 m, and small holes were dug so that the microphones
 would sit in the soil/clay layer just below the hummus layer. 
description: These files are standard .wav sound files and can be opened in
 any standard media player software.
DOI: 10.15468/dl.ea234s
title: Occurrence Download

description: A dataset containing 27325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobophora",
 "Year 1993-2026"
 ]
}

 The dataset includes 27325 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003533-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6badq
title: Occurrence Download

description: A dataset containing 195439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Waarnemingen.be - Non-native animal occurrences in Flanders and the Brussels Capital Region, Belgium",
 "Year 2023-2023"
 ]
}

 The dataset includes 195439 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003467-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qbzkh18p2
title: 50 shades of greenbeard: Robust evolution of altruism based on similarity of complex phenotypes

description: We study the evolution of altruistic behavior under a model where
 individuals choose to cooperate by comparing a set of continuous phenotype
 tags. Individuals play a donation game and only donate to other
 individuals that are sufficiently similar to themselves in a
 multidimensional phenotype space. We find the generic maintenance of
 robust altruism when phenotypes are multidimensional. Selection for
 altruism is driven by the coevolution of individual strategy and
 phenotype; altruism levels shape the distribution of individuals in
 phenotype space. Low donation rates induce a phenotype distribution that
 renders the population vulnerable to the invasion of altruists, whereas
 high donation rates prime a population for cheater invasion, resulting in
 cyclic dynamics that maintain substantial levels of altruism. Altruism is
 therefore robust to invasion by cheaters in the long term in this model.
 Furthermore, the shape of the phenotype distribution in high phenotype
 dimension allows altruists to better resist the invasion by cheaters, and
 as a result, the amount of donation increases with increasing phenotype
 dimension.  We also generalize previous results in the regime of
 weak selection to two competing strategies in continuous phenotype space,
 and show that success under weak selection is crucial to success under
 strong selection in our model. Our results support the viability of a
 simple similarity-based mechanism for altruism in a well-mixed population.
description: Mathematica