cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3626945_d5.v1
title: Additional file 7: Table S9. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

description: Gene-wise level of differentiation of allele frequencies between landraces and Dent (left) and Flint (right) elite lines based on genotyping data. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3626945_d6.v1
title: Additional file 5: Table S6. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

description: Genomic composition and flowering dates of 97 single-segment introgression library lines. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3626972_d1.v1
title: MOESM1 of Spatial patterns of genetic diversity, community composition and occurrence of native and non-native amphipods in naturally replicated tributary streams

description: Additional file 1. The complete dataset on the community data, including a unique identification number for each stream (“nr”), the stream name (“stream_name”), the locality (“gemeinde”, political community), the coordinates (“x_koord” and “y_koord”) in the Swiss coordinate system, the upstream distance to the lake (“distance”, in m), the site being at Untersee or Obersee of Lake Constance (“lakepart”), the sampling day, month and year, the amphipod species identity (“species”) and the number of individuals of that species found (“individuals”).
DOI: 10.17863/cam.31834
title: Research data supporting Cell size control driven by the circadian clock and environment in cyanobacteria

description: This record contains data on birth and division times, as well as on birth and division lengths, of single cells of the cyanobacterium S. elongatus. Data for wild type and clock-null (deletion of kaiBC operon) cells are included. 3 environmental conditions (constant light, graded 12 h light : 12 h dark, and graded 16 h light : 8 h dark) were assayed. Data were obtained from time-lapse microscopy movies, which were acquired on an inverted Nikon Ti-E microscope. Acquired images were subsequently analysed in Matlab using the software Schnitzcells.
DOI: 10.6084/m9.figshare.c.3626957_d6.v1
title: Additional file 6: of Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora

description: Bcl-2 and caspase protein predictions for the coral A. millepora. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3626939_d10.v1
title: MOESM13 of Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing

description: Additional file 13. Reactivation of the inactive PGK X chromosome measured by gene. Aggregated counts for the reference and alternative alleles across all SNPs within a gene. Genes displayed showed p
DOI: 10.6084/m9.figshare.c.3627008_d1.v1
title: Additional file 2: of The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

description: A: Differential gene expression analysis with polysomal RNAseq. Cuffdiff summary including fold change and test statics of genes found to be differentially expressed within the polysomal RNAseq. B: Differential gene expression analysis with total RNAseq (for explanation see legend to File A). (ZIP 1789 kb)
DOI: 10.6084/m9.figshare.c.3626987_d5.v1
title: Additional file 4: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this file we list the genome-wide in vivo NEUROD2 target genes. (XLSX 799 kb)
DOI: 10.6084/m9.figshare.c.3627005_d2.v1
title: Additional file 2: Figure S1. of Initiation of recombination suppression and PAR formation during the early stages of neo-sex chromosome differentiation in the Okinawa spiny rat, Tokudaia muenninki

description: Frequency distribution of relative rates of A/T → G/C and G/C → A/T substitutions in T. muenninki, mouse, and rat. Each relative rate was estimated from the combined sequences of coding (3rd codon only) and noncoding sites of each gene located on the peritelomeric (a) and pericentromeric (b) regions of T. muenninki neo-sex chromosomes and the corresponding autosomal regions of mouse and rat. The horizontal axis shows the log of the ratio of A/T → G/C substitutions to G/C → A/T substitutions, and the vertical axis shows the number of genes. Black bar: T. muenninki; white bar: M. musculus; and gray bar: R. norvegicus. Figure S2. Comparison of nucleotide sequences of TXNDC11 between T. muenninki neo-X and neo-Y. Single base insertion site in neo-Y–linked sequence was indicated by gray box. The sequences were partially skipped in TMU (2407 bp) and MMU (2410 bp), and the skipped site is shown by double slashes. The accession number for Txndc11 gene from mouse is NM_029582. TMU: T. muenniniki, MMU: M.musculus. Figure S3. The estimation of nucleotide substitution directions in the three species by the maximum parsimony principle. TMU: T. muenninki, MMU: M. musculus, RNO: R. norvegicus. (ZIP 342 kb)
DOI: 10.6084/m9.figshare.c.3627008_d2.v1
title: Additional file 6: of The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

description: Parameters employed for the read alignments using Tophat and Cuffdiff. (XLSX 8 kb)
DOI: 10.17863/cam.13320
title: Computational Data for "The Synthesis and Characterization of the Rare-Earth Hybrid Double Perovskites: (CH₃NH₃)₂KGdCl₆ and (CH₃NH₃)₂KYCl₆"

description: This repository contains the data from the computational work done in the paper. The data provide enough information to reproduce the results shown in the paper.
DOI: 10.23668/psycharchives.4982
title: Dataset for "I Know What I Like When I See It: Likability is Distinct from Pleasantness since Early Stages of Multimodal Emotion Evaluation "

description: Liking and pleasantness are common concepts in psychological emotion theories, and everyday language related to emotions. Despite obvious similarities between the terms, several empirical and theoretical notions support the idea that pleasantness and liking are cognitively different phenomena, becoming most evident in the context of emotion regulation and art enjoyment. In this study it was investigated whether liking and pleasantness indicate behaviourally measurable differences, not only in the long timespan of emotion regulation, but already within the initial affective responses to visual and auditory stimuli. A cross-modal affective priming protocol was used to assess whether there is a behavioural difference in the response time when providing an affective rating to a liking or pleasantness task. It was hypothesized that the pleasantness task would be faster as it is known to rely on rapid feature detection. Furthermore, an affective priming effect was expected to take place across the sensory modalities and the presentative and non-presentative stimuli. A linear mixed effect analysis indicated a significant priming effect, as well as an interaction effect between the auditory and visual sensory modalities and the affective rating tasks of liking and pleasantness: While liking was rated fastest across modalities, it was significantly faster in vision compared to audition. No significant modality dependent differences between the pleasantness ratings were detected. The results demonstrate that liking and pleasantness rating scales refer to separate processes already within the short time scale of a one to two seconds. Furthermore, the affective priming effect indicates that an affective information transfer takes place across modalities and the types of stimuli applied. Unlike hypothesized, liking rating took place faster across the modalities. This is interpreted to support emotion theoretical notions where liking and disking are crucial properties of emotions perception and homeostatic self-referential information, possibly overriding pleasantness-related feature analysis. Conclusively, the findings provide empirical evidence for a conceptual delineation of common affective processes.
DOI: 10.6084/m9.figshare.c.3626987_d6.v1
title: Additional file 5: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: Confirmation of NEUROD2 binding to putative target genes identified by the ClosesetGene method. NEUROD2 ChIP and GFP ChIP DNA were used as templates for qPCR analysis. Data is represented as the amount of enrichment in target genes in NEUROD2 ChIP DNA as compared to a negative control GFP ChIP DNA. NEUROD2 non-target genes did not display a significant level of NEUROD2 binding. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3626939_d15.v1
title: MOESM15 of Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing

description: Additional file 15. Genes that fail to establish silencing upon Setdb1 depletion. The SNPs that show a failure to establish silencing at day 5 of differentiation in replicates 1 and 2 from RNA-seq in differentiating ES cells are shown. The genes that overlap between replicates 1 and 2 are also shown and the Xi/Xa read count ratio is given.
DOI: 10.6084/m9.figshare.c.3627008_d3.v1
title: Additional file 4: of The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

description: Total RNAseq FPKM of regulated TSS. Expression levels as measured by total RNAseq of primary transcripts (those containing the same TSS) of genes found to have altered promoter usage between MCF10A and MCF7. The average level of expression (“_FPKM”) as well as the lower (“_conf_lo”) and upper (“_conf_hi”) 95 % confidence intervals are recorded for every primary transcript of each gene. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3627005_d3.v1
title: Additional file 1: Table S1. of Initiation of recombination suppression and PAR formation during the early stages of neo-sex chromosome differentiation in the Okinawa spiny rat, Tokudaia muenninki

description: List of BAC clones screened for FISH analysis in this study. Table S2. List of genes located on the three regions of neo-sex chromosomes in T. muenninki. Table S3. Comparison of G + C content and nucleotide substitution frequency in three regions among T. muenninki, mouse, and rat with guinea pig as outgroup. Table S4. Frequencies (%) of nucleotide substitutions in sites preceded by C or followed by G in T. muenninki neo-sex chromosomal segments and their autosomal homologs in mouse and rat. Table S5. Detection of male-specific substitutions in 24 genes located on the neo-sex chromosomes. Table S6. Male-specific substitutions observed in the pericentromeric region of the T. muenninki neo-Y chromosome. Table S7. Resulti of tests of the differences in dN/dS ratios among T. muenninki neo-X, neo-Y, and other branches. Table S8. G + C content and frequency of nucleotide substitutions in T. muenninki neo-sex chromosomes and their homologous region in mouse. Table S9. List of BAC clones identified for neo-sex sequence determination. Table S10. Results of next-generation sequencing on an Illumina HiSeq, using a 100 bp paired-end protocol and de novo assembly. Table S11. Results of next-generation sequencing on an Illumina MiSeq, using a 300 bp paired-end protocol and de novo assembly. (ZIP 110 kb)
DOI: 10.6084/m9.figshare.c.3626987_d7.v1
title: Additional file 3: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this file we list the genome-wide in vivo NEUROD2 peak coordinates. (XLSX 3195 kb)
DOI: 10.17863/cam.13336
title: Dataset - The effect of local reinforcing bar reductions and anchorage zone cracking on the load capacity of RC half-joints

description: Dataset supporting the journal publication 'The effect of local reinforcing bar reductions and anchorage zone cracking on the load capacity of RC half-joints', published in Engineering Structures
DOI: 10.6084/m9.figshare.c.3626987_d8.v1
title: Additional file 9: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: This table lists the sequences of all primers used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3627008_d4.v1
title: Additional file 5: of The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

description: Polysomal RNAseq FPKM of regulated TSS. Expression levels as measured by polysomal RNAseq of primary transcripts (those containing the same TSS) of genes found to have altered promoter usage between MCF10A and MCF7 cells. For an explanation see legend to Additional file 4. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3627008_d5.v1
title: Additional file 3: of The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

description: Translational regulated genes. Names of genes found to be UP or DOWN-regulated in MCF7 cells relative to MCF10A using both the RefSeq and Ensembl annotations. Assigned genes common to both data sets are aligned and highlighted in red. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3627017_d2.v1
title: Additional file 2:Â Table S1. of Systemic immune response and virus persistence after foot-and-mouth disease virus infection of naĂŻve cattle and cattle vaccinated with a homologous adenovirus-vectored vaccine

description: Full dataset in tab-separated format. (TSV 70Â kb)
DOI: 10.6084/m9.figshare.c.3626987_d9.v1
title: Additional file 8: of Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation

description: In this table we provide the NEUROD2 target genes that function in axon guidance pathways. (XLSX 11 kb)
DOI: 10.17863/cam.54273
title: Dataset supporting Suryanarayan et al., 2020, 'Lipid residues in pottery from the Indus Civilisation in northwest India', Journal of Archaeological Science

description: This dataset is linked to the publication Suryanarayan et al. 'Lipid residues in pottery from the Indus Civilisation in northwest India', published open access in Journal of Archaeological Science. It contains: 1. A .csv file that contains all the GC-MS and GC-C-IRMS results, along with the details of the vessel samples. This includes contextual information such as sample ID, site name, type of settlement, trench number, context number, chronological details, details of climatic period (before, during or after 4.2 ka BP), vessel details (including type of sample, type of vessel and other vessel characteristics such as rim diameter, shape, etc.); GC-MS results: the lipid yield and concentration of every fatty acid present in the sample (from C12:0 to C28:0), the presence/absence of n-alkanes, alcohols, phthalates and sulphur, the values of C16:0/C18:0 ad finally, the GC-C-IRMS results which include the d13C values of C16:0 and C18:0 fatty acids as well as the D13C (d13C18:0-d13C16:0) values. 2. R Markdown file that contains the R code for the figures in the paper. 3. R Markdown file that contains the R code for the figures and statistics in the supplementary information. 4. PDFs of the R Markdown files and Supplementary Information-3, which contains images and details of all the vessels analysed.
DOI: 10.23668/psycharchives.4985
title: (Un)Locking Self-Motivation: Action versus State Orientation Moderates the Effect of Demanding Conditions on Self-Regulatory Performance

description: Objective: The present research examined whether individual differences in self-motivation (i.e., action vs. state orientation) moderate the effect of demands on self-regulatory performance. Whereas state-oriented individuals consistently show a locking effect (i.e., impaired self-regulatory performance under demands), it is empirically less clear whether action-oriented individuals need at least some demands to unlock their self-motivation potential. Method: In three studies (N1=164, N2=120, N3=113), we examined the impact of demanding conditions (Study 1: subjective listlessness; Studies 2&3: uncompleted vs. completed intention) on action- and state-oriented individuals in established self-regulatory tasks (Studies 1&2: Stroop task; Study 3: Grid task). Tasks required self-regulation when congruent Stroop stimuli were frequent (vs. rare) and target shifts in the Grid task self-initiated (vs. externally cued). Results: Across all studies, action versus state orientation moderated the effect of demands on self-regulatory performance. Action-oriented participants showed fewer errors (pStudy1=.074, pStudy2=.036) and faster self-initiated target shifts (pStudy3=.046) under moderate compared to low demands. State-oriented participants showed trends in the opposite direction. Conclusions: The findings show that action-oriented individuals do not unlock their self-motivation potential unless there is some kind of demand. This dynamic suggests that action orientation is neither good nor bad but has opposing effects under different demand levels.
DOI: 10.17863/cam.8309
title: Research Data Supporting: Intermolecular Anharmonicity in Molecular Crystals: Interplay Between Experimental Low-Frequency Dynamics and Quantum Quasi-Harmonic Simulations of Solid Purine

description: Variable temperature THz-TDS and low-frequency Raman data DFT-predicted low-frequency spectra Crystallographic information
DOI: 10.15468/dl.mgtrtb
title: Occurrence Download

description: A dataset containing 4063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hesperomyces harmoniae Haelew. & De Kesel"
 ]
}

 The dataset includes 4063 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037845-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.96712
title: Research Data supporting "Age and an obesogenic diet affect mouse behaviour in a sex-dependent manner"

description: There are three variables: age (8-9 weeks, 11-13 weeks and 20-22), sex, and diet (control or high fat, high sugar). There are three types of data: 1. Behaviour (open field OF, elevated plus maze EPM or social preference SP tasks): effects of age (OF and EPM only), sex and diet 2. Nutrient intake: food intake, calorie intake and protein intake 3. Body composition: body weight, total body fat mass and individual fat deposit masses. All three types of data are in CSV files. 1. Behavioural data: these are structured by sex and either age (Figure 1, OF; Figure 2, EPM) or by diet (OF, Figure 5; EPM, Figure 6; SP, Figure 7). For OF data, measurements include the total number of lines crossed in the OF, the number of entries into the centre of the OF, the time spent in the centre of the OF (in seconds) and the number of times the mouse rears within the OF. For EPM data, measurements include the time spent in the open arm of the EPM (% of total), the number of full entries to the open arm, the number of full entries to the closed arm, the number of explorations to the end of the open arm, and the number of times the mouse rears in the open arm. For SP data, measurements include the time spent in the intruder compartment as a % of total time and the social preference index (TS-TNS)/(TS+TNS), where TS is the social stimulus or intruder mouse and TNS is the non-social stimulus or object. 2. Nutrient intake is expressed as either kcal or g of food or protein per day per gram of mouse, measured weekly over a 24h period from weeks 9-13 for a subset of cages. There is a single CSV file containing the data for male and female mice on either the standard lab chow or on the high fat, high sugar diet. 3. Body composition: total body fat and lean mass (measured by Dual Energy X-ray Absorptiometry (DEXA) scanning (Lunar PIXImus densitometer; GE Healthcare) and/or the weights of the individual fat deposits and body organs are expressed in grams. There is a single CSV file containing the data for male and female mice on either the standard lab chow or on the high fat, high sugar diet.
DOI: 10.17863/cam.17392
title: Research data supporting "An Event-Triggered Programmable Prefetcher for Irregular Workloads"

description: Source code for the LLVM passes for automating programmable prefetching, as well as code modifications to gem5 to evaluate programmable prefetching, and associated benchmarks.
DOI: 10.15468/dl.kzyxr5
title: Occurrence Download

description: A dataset containing 69921 records in GBIF matching the query:
SELECT
 datasetKey AS "datasetKey",
 COUNT(*) AS "numberOccurrences",
 COUNT(DISTINCT kingdomKey) AS "distinctKingdom",
 COUNT(DISTINCT phylumKey) AS "distinctPhylum",
 COUNT(DISTINCT classKey) AS "distinctClass",
 COUNT(DISTINCT orderKey) AS "distinctOrder",
 COUNT(DISTINCT familyKey) AS "distinctFamily",
 COUNT(DISTINCT genusKey) AS "distinctGenus",
 COUNT(DISTINCT speciesKey) AS "distinctSpecies",
 COUNT(DISTINCT taxonKey) AS "distinctTaxa",
 COUNT(DISTINCT countryCode) AS "distinctCountry"
FROM
 occurrence
GROUP BY
 datasetKey
ORDER BY
 "distinctTaxa" DESC;


 The dataset's 69921 records were derived from 69921 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037831-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.37974
title: Research data supporting 'Border-ownership-dependent tilt aftereffect for shape defined by binocular disparity and motion parallax'

description: Research project description: Figure-ground segmentation is a critical function that may be supported by “border-ownership” neural systems that conditionally respond to object borders. We measured border-ownership-dependent tilt aftereffects to figures defined by motion parallax or binocular disparity and found aftereffects for both cues. These effects were transferable between cues, but selective for figure-ground depth order, suggesting that the neural systems supporting figure-ground segmentation have strict depth order selectivity and access to multiple depth cues that are jointly encoded. Data description: This dataset comprises two .mat files, one for each experiment in the project. Each file contains raw, normalized, and average bias and slope parameters for each subject/condition.
DOI: 10.6084/m9.figshare.c.3627146_d1.v1
title: MOESM5 of Genetic associations with micronutrient levels identified in immune and gastrointestinal networks

description: Met_PC1 genes mapping to quantitative trait loci (Figure 8 ) (XLSX 1090Â kb)
DOI: 10.6084/m9.figshare.c.3627152_d1.v1
title: Additional file 1: of Mental health literacy measures evaluating knowledge, attitudes and help-seeking: a scoping review

description: Supplementary files contain an example of search strategies in PubMed, and supplementary references of studies that applied mental health literacy measures but did not provide related psychometrics information. (ZIP 97 kb)
DOI: 10.6084/m9.figshare.c.3627146_d2.v1
title: MOESM3 of Genetic associations with micronutrient levels identified in immune and gastrointestinal networks

description: Genewise analysis of SNPs associated with met_PC1 (FigureÂ 6) (XLSX 425Â kb)