cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29879730.v1
title: Mitochondrial DNA copy number as a genetic determinant of renal function: insights from bidirectional Mendelian randomization

description: <b>Background:</b> Observational studies suggest a correlation between mitochondrial DNA copy number (mtDNA-CN) and renal function; however, the causality remains uncertain. This study employed a two-sample bidirectional Mendelian randomization (MR) analysis to investigate the genetic causal relationship between mtDNA-CN and renal function. <b>Methods:</b> Genome-wide association study (GWAS) data for mtDNA-CN were obtained from the UK Biobank (<i>n</i> = 395,718), with renal function data primarily sourced from the CKDGen consortium and FinnGen studies. Four MR methods were employed, using inverse variance weighting as the primary approach, complemented by weighted median, MR Egger, and MR-PRESSO for sensitivity analyses. Multivariable MR (MVMR) assessed result robustness. Reverse MR treated renal function as the exposure. Validation was performed using additional mtDNA-CN GWAS data from the CHARGE UK Biobank (<i>n</i> = 465,809). <b>Results:</b> Forward MR analysis demonstrated a positive association between genetically predicted mtDNA-CN and estimated glomerular filtration rate (eGFR) [odds ratio (OR) = 1.007, 95% CI 1.003–1.012, <i>p</i> = 0.003]. MVMR suggested weaker evidence after adjusting for neutrophil count. Reverse MR revealed causal associations of urinary albumin-creatinine ratio (OR = 0.958, 0.923–0.994, <i>p</i> = 0.023) and microalbuminuria (OR = 0.981, 0.965–0.997, <i>p</i> = 0.021) with mtDNA-CN, though these effects were non-significant after multiple testing correction. Sensitivity and validation analyses confirmed robust. The findings from validation analyses were consistent. <b>Conclusion:</b> Our study suggests a potential causal association between mtDNA-CN and eGFR. However, the impact of confounding factors and the absence of consistent associations with other renal function markers underscore the necessity for further research to clarify the role of mtDNA-CN in renal function.
DOI: 10.15468/dl.kqkdcg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callionymus microps"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035855-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29879711.v1
title: Modern Societal Changes and Their Impacts on Students’ Identity: Results in Light of Social Cognitive Theory

description: Dataset of study titled: Modern Societal Changes and Their Impacts on Students’ Identity: Results in Light of Social Cognitive Theory
DOI: 10.6084/m9.figshare.29879711
title: Modern Societal Changes and Their Impacts on Students’ Identity: Results in Light of Social Cognitive Theory

description: Dataset of study titled: Modern Societal Changes and Their Impacts on Students’ Identity: Results in Light of Social Cognitive Theory
DOI: 10.15468/dl.asjbwj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Reynoutria japonica)",
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035856-250802193616735/datasets/export for details.
DOI: 10.15468/dl.mrquq6
title: Occurrence Download

description: A dataset containing 390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synchiropus papilio"
 ]
}

 The dataset includes 390 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035857-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15032395
title: Generative AI for Software Architecture. Applications, Trends, Challenges, and Future Directions

description:  




Sheet Name
Description




Query
Search strings for all sources


White_Literature_Process
Screening log — white literature (peer‑reviewed)


Grey_Literature_Process
Screening log — grey literature


Extraction_Form
Data Extraction Form for the selected papers


Accepted_Papers_WhiteGrey
Master inclusion table with full coding


Final_Coding
See detailed description below


Open_Ended
Free‑text purposes mapped to thematic codes


Publication_Venue
Venue aggregation


LLMModel_Table
Model‑usage summary (by family/model)




Detailed Sheet Descriptions

Query

Contains the exact search strings used in all databases and web sources. Each query is tailored to the syntax of the specific search engine (e.g., Scopus, IEEE Xplore, ACM DL, Web of Science, Google). Used to reproduce searches in the replication process.

White_Literature_Process

Screening log for peer‑reviewed literature. Includes staged inclusion columns:



Title/Abstract (T/A) screening

Full‑text screening

Snowballing inclusion

Quality Assessment (QA) Each stage records independent scores from three authors.


Grey_Literature_Process

Screening log for grey literature (e.g., blogs, technical reports). Mirrors the structure of the white literature sheet with the same staged decisions and per‑reviewer columns.

Accepted_Papers_WhiteGrey

Consolidated table of all included studies (white and grey literature). Contains complete metadata and coded variables such as:



Work Category, Type of Work

Architecture styles/patterns, Analysis Methods, Modelling Languages

Purpose (Direction), Purpose (LLM), Human Model Interaction

Rationale, LLM Models, Model Enhancements, Prompt Engineering

Use Cases, Languages, and Future Challenges


Open_Ended

Maps free‑text responses to thematic codes for qualitative analysis of purposes and trends.

Publication_Venue

Aggregates venues of included studies, including counts and venue type (e.g., conference, journal).

LLMModel_Table

Summarizes LLM families and models used in the included studies. Supports figures showing model adoption trends.

Coding

Used for figure and table generation.

Glossary of [White/Grey] Literature Process Fields



Included by T/A: Inclusion at title/abstract screening stage.

Included by Fullread: Inclusion after full‑text review.

Included by Snowballing: Added through citation chasing.

Included by QA: Passed quality assessment stage.


Citation

If you use this package, please cite the accompanying MLR paper.
DOI: 10.5281/zenodo.16791899
title: Generative AI for Software Architecture. Applications, Trends, Challenges, and Future Directions

description:  




Sheet Name
Description




Query
Search strings for all sources


White_Literature_Process
Screening log — white literature (peer‑reviewed)


Grey_Literature_Process
Screening log — grey literature


Extraction_Form
Data Extraction Form for the selected papers


Accepted_Papers_WhiteGrey
Master inclusion table with full coding


Final_Coding
See detailed description below


Open_Ended
Free‑text purposes mapped to thematic codes


Publication_Venue
Venue aggregation


LLMModel_Table
Model‑usage summary (by family/model)




Detailed Sheet Descriptions

Query

Contains the exact search strings used in all databases and web sources. Each query is tailored to the syntax of the specific search engine (e.g., Scopus, IEEE Xplore, ACM DL, Web of Science, Google). Used to reproduce searches in the replication process.

White_Literature_Process

Screening log for peer‑reviewed literature. Includes staged inclusion columns:



Title/Abstract (T/A) screening

Full‑text screening

Snowballing inclusion

Quality Assessment (QA) Each stage records independent scores from three authors.


Grey_Literature_Process

Screening log for grey literature (e.g., blogs, technical reports). Mirrors the structure of the white literature sheet with the same staged decisions and per‑reviewer columns.

Accepted_Papers_WhiteGrey

Consolidated table of all included studies (white and grey literature). Contains complete metadata and coded variables such as:



Work Category, Type of Work

Architecture styles/patterns, Analysis Methods, Modelling Languages

Purpose (Direction), Purpose (LLM), Human Model Interaction

Rationale, LLM Models, Model Enhancements, Prompt Engineering

Use Cases, Languages, and Future Challenges


Open_Ended

Maps free‑text responses to thematic codes for qualitative analysis of purposes and trends.

Publication_Venue

Aggregates venues of included studies, including counts and venue type (e.g., conference, journal).

LLMModel_Table

Summarizes LLM families and models used in the included studies. Supports figures showing model adoption trends.

Coding

Used for figure and table generation.

Glossary of [White/Grey] Literature Process Fields



Included by T/A: Inclusion at title/abstract screening stage.

Included by Fullread: Inclusion after full‑text review.

Included by Snowballing: Added through citation chasing.

Included by QA: Passed quality assessment stage.


Citation

If you use this package, please cite the accompanying MLR paper.
DOI: 10.15468/dl.vnyz5e
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5451"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035858-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8ps4j
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clematis pierotii"
 ]
}

 The dataset includes 83 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035859-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj4uhe
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camellia anlungensis"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035860-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2t5bk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5452"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035861-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh7d6x
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Camellia atuberculata"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035862-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.km2cze
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "GadmGid is one of (IDN.1_1, IDN.30_1, IDN.31_1, IDN.32_1, IDN.24_1, IDN.16_1, IDN.8_1, IDN.3_1, IDN.17_1, IDN.5_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Cercopithecidae",
 "Year 2025-2025"
 ]
}

 The dataset includes 138 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035864-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjx3ua
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is TRUE",
 "TaxonKey is one of (Halimeda macroloba, Halimeda opuntia)"
 ]
}

 The dataset includes 252 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035863-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj5qx7
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synchiropus stellatus"
 ]
}

 The dataset includes 136 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035865-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2askh2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Camellia hupehensis"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035866-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47v83j
title: Occurrence Download

description: A dataset containing 23285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Reynoutria japonica)",
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23285 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035867-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npkfbc
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5248"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035868-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfy7g6
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clematis tamurae"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035869-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25451/flinders.29879330.v1
title: Taxonomy summaries of the metagenomics data sequenced as part of the investigation into the Panzi outbreak.

description: These tables contain the taxonomic summaries of the sequences generated as part of the investigation into the disease outbreak in Panzi in 2024. Tony Wawina-Bokalanga and colleagues generated the sequences, and the taxonomic summaries were generated by comparing those sequences to the UniRef50 database using MMSeqs2 using the atavide-lite pipeline.For each taxonomic level (kingdom, phylum, class, order, family, genus, species) there are two files, <code>raw</code> for the raw data which is the number of reads that mapped at that taxonomic level, and <code>norm</code> for the normalised number of reads that mapped, which is given by the number of reads that mapped at that level, dividided by the total number of reads that mapped, multiplied by 1,000,000.The tables are tab-separated values that can be easily read by R, Python, Pandas, Excel, OpenOffice, or any other software.<br>
DOI: 10.15468/dl.r969nw
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neosynchiropus stellatus"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035870-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12730872
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.7w2ucq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5247"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035871-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4g7ey
title: Occurrence Download

description: A dataset containing 299536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Veronica serpyllifolia"
 ]
}

 The dataset includes 299536 records from 1660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035832-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kqpvv
title: CCDC 2375308: Experimental Crystal Structure Determination

description: Related Article: Ping-Xin Zhou, Yang Liu, Mengjuan Li, Hang Chen, Tao Wu, Xinyang Chen, Kaikai Wang, Feng Ren, Yun Fu, Yong-Min Liang|2025|Org.Lett.|27|4389|doi:10.1021/acs.orglett.5c01208
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kv20j
title: CCDC 2378537: Experimental Crystal Structure Determination

description: Related Article: Lidan Sun, Mengze Xu, Yurou Feng, Quanjie Lin, Xiaolan Xie, Jinhai Shen, Zhichao Chen|2025|New J.Chem.|49|7268|doi:10.1039/D5NJ00238A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l76sv
title: CCDC 2390217: Experimental Crystal Structure Determination

description: Related Article: Yanxia Zhen, Wei Jiang, Yuanzhen Xu, Xiangyu Hui, Xiaoran Shi, Huanhuan Zou, Qianhu Chen, Junhan Chen, Hongbo Wei, Weiqing Xie|2025|Org.Lett.|27|4305|doi:10.1021/acs.orglett.5c00982
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.sgd38m
title: Occurrence Download

description: A dataset containing 184237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solidago canadensis L."
 ]
}

 The dataset includes 184237 records from 803 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011757-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5255/ukda-sn-9318-1
title: Understanding Society: Innovation Panel, Waves 13-16, 2020-2023: Special Licence Access, Higher Education Codes
title: Understanding Society, Waves 1-, 2008- : Special Licence Access

description: &lt;span style="font-style: italic;"&gt;Understanding Society&lt;/span&gt; (the UK Household Longitudinal Study), which began in 2009, is conducted by the Institute for Social and Economic Research (ISER) at the University of Essex, and the survey research organisations Verian Group (formerly Kantar Public) and NatCen. It builds on and incorporates, the British Household Panel Survey (BHPS), which began in 1991. 
&lt;p&gt;Understanding Society (the UK Household Longitudinal Study), which began in 2009, is conducted by the Institute for Social and Economic Research (ISER) at the University of Essex, and the survey research organisations Kantar Public and NatCen. It builds on and incorporates, the British Household Panel Survey (BHPS), which began in 1991.&lt;/p&gt;
&lt;p&gt;The Understanding Society: Innovation Panel, Special Licence Access, Higher Education Codes dataset contains higher education institution identification codes for Waves 13 onwards. For a full description of the variables available in this dataset please refer to the Understanding Society: Innovation Panel Higher Education Codes User Guide.&lt;/p&gt;
&lt;p&gt;The details in this dataset can be linked to the main Understanding Society datasets SN 6849 (End User Licence), SN 7083 (Special Licence) and SN 7332 (Secure Access) using the crosswave personal identifier pidp. The institution identifiers in the data files can be used to link to publicly available datasets published by HESA and elsewhere.&lt;/p&gt;
&lt;p&gt;These data have more restrictive access conditions than those available under the standard End User Licence (see 'Access' section below). Those users who wish to make an application for these data should contact the Help Desk for further details.&lt;/p&gt;
&lt;p&gt;&lt;b&gt;Latest Edition Information&lt;/b&gt;&lt;/p&gt;
&lt;p&gt;For the 1st edition (November 2024), Higher Education institution data has been removed from all applicable waves (13 to 16) of the EUL (SN 6849), Special Licence (SN 7083) and Secure Access (SN 7332) versions of the Innovation Panel and released in this new Special Licence dataset.&lt;/p&gt;