cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5863497
title: Environmental variables in packing houses and their effects on the quality of grapes

description: ABSTRACT The aim of this study was to characterize the thermal environment in the selection and packing areas of a packing house and its effects on the quality of table grapes produced in the São Francisco Valley, Brazil. The thermal environment was monitored during the winter and summer seasons. The highest value of air temperature (Tair) and the lowest relative humidity (RH) observed in the packing house were 35 °C and 40.0%, respectively, obtained during the summer, for 8 h. After observing the thermal environment data of the packing house, simulations were performed to evaluate the effect of the ideal environmental storage conditions and observed thermal conditions on the postharvest quality of “Thompson” grapes. Grapes were harvested and stored directly at the ideal temperature and RH of 0 °C and 90%, respectively, or previously exposed to a temperature of 35 °C and RH of 40% for 8 h, the thermal environment observed in the evaluated packing house, followed by storage at 0 °C and 90% RH. Fruit exposure to high temperature and low RH before the ideal storage conditions resulted in higher loss of berry firmness and weight, along with increased soluble solids and dry matter content of rachis and berry. Based on these results, the environmental conditions observed in the packing house result in berry dehydration, which accelerates the loss of fruit quality during storage.
DOI: 10.6084/m9.figshare.5863497.v1
title: Environmental variables in packing houses and their effects on the quality of grapes

description: ABSTRACT The aim of this study was to characterize the thermal environment in the selection and packing areas of a packing house and its effects on the quality of table grapes produced in the São Francisco Valley, Brazil. The thermal environment was monitored during the winter and summer seasons. The highest value of air temperature (Tair) and the lowest relative humidity (RH) observed in the packing house were 35 °C and 40.0%, respectively, obtained during the summer, for 8 h. After observing the thermal environment data of the packing house, simulations were performed to evaluate the effect of the ideal environmental storage conditions and observed thermal conditions on the postharvest quality of “Thompson” grapes. Grapes were harvested and stored directly at the ideal temperature and RH of 0 °C and 90%, respectively, or previously exposed to a temperature of 35 °C and RH of 40% for 8 h, the thermal environment observed in the evaluated packing house, followed by storage at 0 °C and 90% RH. Fruit exposure to high temperature and low RH before the ideal storage conditions resulted in higher loss of berry firmness and weight, along with increased soluble solids and dry matter content of rachis and berry. Based on these results, the environmental conditions observed in the packing house result in berry dehydration, which accelerates the loss of fruit quality during storage.
DOI: 10.6084/m9.figshare.5863494
title: Use of elephant grass (Pennisetum purpureum) as substrate for cellulase and xylanase production in solid-state cultivation by Penicillium echinulatum

description: Abstract The high cost of the enzymes used for the hydrolysis of lignocellulosic biomass is one of the bottlenecks in the production of second-generation ethanol and the use of local biomass, such elephant grass, can help to reduce this cost. In this investigation elephant grass biomass was evaluated as a carbon and inducer source of production of cellulases and xylanases by the fungus Penicillium echinulatum strain 9A02S1 in solid-state cultivation. The highest filter paper activity (13.26 U.g-1 dry matter) and β-glucosidase activity (138.34 U.g-1 dry matter) were obtained on the fifth day of cultivation, in medium containing biomass pre-treated with sulfuric acid and untreated, respectively. The highest endoglucanase activity was 158.44 U.g-1 dry matter in the presence of elephant grass pre-treated with sulfuric acid. The xylanase activity was highest with medium that was formulated with 75% untreated elephant grass and 25% wheat bran (372.62 U.g-1 dry matter). In conclusion, the results showed that it is possible to obtain large amounts of cellulases and xylanases using a cosmopolitan and very low cost substrate such as elephant grass.
DOI: 10.6084/m9.figshare.5863494.v1
title: Use of elephant grass (Pennisetum purpureum) as substrate for cellulase and xylanase production in solid-state cultivation by Penicillium echinulatum

description: Abstract The high cost of the enzymes used for the hydrolysis of lignocellulosic biomass is one of the bottlenecks in the production of second-generation ethanol and the use of local biomass, such elephant grass, can help to reduce this cost. In this investigation elephant grass biomass was evaluated as a carbon and inducer source of production of cellulases and xylanases by the fungus Penicillium echinulatum strain 9A02S1 in solid-state cultivation. The highest filter paper activity (13.26 U.g-1 dry matter) and β-glucosidase activity (138.34 U.g-1 dry matter) were obtained on the fifth day of cultivation, in medium containing biomass pre-treated with sulfuric acid and untreated, respectively. The highest endoglucanase activity was 158.44 U.g-1 dry matter in the presence of elephant grass pre-treated with sulfuric acid. The xylanase activity was highest with medium that was formulated with 75% untreated elephant grass and 25% wheat bran (372.62 U.g-1 dry matter). In conclusion, the results showed that it is possible to obtain large amounts of cellulases and xylanases using a cosmopolitan and very low cost substrate such as elephant grass.
DOI: 10.6084/m9.figshare.5863488
title: Reservoir longitudinal gradient promotes ordered losses on diversity and density of Ephemeroptera community

description: Abstract Reservoir operations alter, eliminate or restrain the natural hydrologic cycles. Biotic community has become subject to these non-cyclic events, responding by reducing the species diversity. Ephemeroptera species present distinct responses to environmental deterioration such that poses this assemblage between the most useful groups in biomonitoring programs. We hypothesized an alteration in beta diversity at the longitudinal species gradient, which will be influenced mainly by species losses between zones. Changes in temporal beta diversity is also expected, but the main drivers of such alterations will be the species turnover between the sampling period. Ephemeroptera community was monitored in nine sampling points from Itaipu Reservoir, where were installed three sets of substrates composed by a float and 2 wooden substrates. We took biological samples in triplicates monthly, from June-01 to August-02. Our initial hypothesis was partially supported and with significant variations only for spatial approach, between the Reservoir zones. The generated ordering from Non-Metric Dimensional Scale – NMDS - corroborated with spatial analyzes, with the formation of two groups along the gradient zonation of the reservoir. The temporal ordination showed no clear pattern. As expected, the contribution to beta diversity was different for our two approaches, such that the loss of species was more important along the spatial gradient and despite of no significant result, the species replacement was more important among months. The spatial results lead us to infer that differences in limnological characteristics between zones are important for determining differences in Ephemeroptera composition and can reflect the dependency degree of the species in relation to the lentic and sometimes-lotic conditions, mainly in the riverine zone of reservoirs. On the other hand, the absence of a temporal pattern can be result of chaotic variations in the physical and chemical attributes imposed by the reservoir operation, disrupting continuity of the biota and natural succession processes.
DOI: 10.6084/m9.figshare.5863488.v1
title: Reservoir longitudinal gradient promotes ordered losses on diversity and density of Ephemeroptera community

description: Abstract Reservoir operations alter, eliminate or restrain the natural hydrologic cycles. Biotic community has become subject to these non-cyclic events, responding by reducing the species diversity. Ephemeroptera species present distinct responses to environmental deterioration such that poses this assemblage between the most useful groups in biomonitoring programs. We hypothesized an alteration in beta diversity at the longitudinal species gradient, which will be influenced mainly by species losses between zones. Changes in temporal beta diversity is also expected, but the main drivers of such alterations will be the species turnover between the sampling period. Ephemeroptera community was monitored in nine sampling points from Itaipu Reservoir, where were installed three sets of substrates composed by a float and 2 wooden substrates. We took biological samples in triplicates monthly, from June-01 to August-02. Our initial hypothesis was partially supported and with significant variations only for spatial approach, between the Reservoir zones. The generated ordering from Non-Metric Dimensional Scale – NMDS - corroborated with spatial analyzes, with the formation of two groups along the gradient zonation of the reservoir. The temporal ordination showed no clear pattern. As expected, the contribution to beta diversity was different for our two approaches, such that the loss of species was more important along the spatial gradient and despite of no significant result, the species replacement was more important among months. The spatial results lead us to infer that differences in limnological characteristics between zones are important for determining differences in Ephemeroptera composition and can reflect the dependency degree of the species in relation to the lentic and sometimes-lotic conditions, mainly in the riverine zone of reservoirs. On the other hand, the absence of a temporal pattern can be result of chaotic variations in the physical and chemical attributes imposed by the reservoir operation, disrupting continuity of the biota and natural succession processes.
DOI: 10.6084/m9.figshare.5863479
title: PROFESSIONAL INSERTION OF THE GRADUATES FROM A PHYSICAL EDUCATION COURSE WITH EMPHASIS ON HEALTH TRAINING

description: Abstract The objectives of the study were to understand the employability of the graduates from a Physical Education course with emphasis on health training from the perspective of the Unified Health System and to analyze the relationship between this insertion and the interdisciplinary and interprofessional training proposed by the institution – in this case, the Federal University of São Paulo – Baixada Santista Campus , São Paulo, Brazil. For that, in 2012, an exploratory qualitative research was developed, which analyzed part of the database of a study that aimed to evaluate the interprofessional education project in the health training program of the institution. From the total sample of this research (107 volunteers), 15 graduates from the Physical Education course, formed in the 1st and 2nd classes, were included in the study. Data analysis was performed by a posteriori categories. The results showed that the graduates were inserted in areas common to Physical Education (gymnastic academies, personal trainer, physical evaluation, among others), in postgraduation and, less frequently, in the Unified Health System environment. It is concluded that the employability of Physical Education professionals in the Unified Health System is still small, even for a course with this emphasis.
DOI: 10.6084/m9.figshare.5863479.v1
title: PROFESSIONAL INSERTION OF THE GRADUATES FROM A PHYSICAL EDUCATION COURSE WITH EMPHASIS ON HEALTH TRAINING

description: Abstract The objectives of the study were to understand the employability of the graduates from a Physical Education course with emphasis on health training from the perspective of the Unified Health System and to analyze the relationship between this insertion and the interdisciplinary and interprofessional training proposed by the institution – in this case, the Federal University of São Paulo – Baixada Santista Campus , São Paulo, Brazil. For that, in 2012, an exploratory qualitative research was developed, which analyzed part of the database of a study that aimed to evaluate the interprofessional education project in the health training program of the institution. From the total sample of this research (107 volunteers), 15 graduates from the Physical Education course, formed in the 1st and 2nd classes, were included in the study. Data analysis was performed by a posteriori categories. The results showed that the graduates were inserted in areas common to Physical Education (gymnastic academies, personal trainer, physical evaluation, among others), in postgraduation and, less frequently, in the Unified Health System environment. It is concluded that the employability of Physical Education professionals in the Unified Health System is still small, even for a course with this emphasis.
DOI: 10.6084/m9.figshare.5863431
title: Longitudinal demographic study of wild populations of African annual killifish

description: data in support of the analyses in Vrtilek et al. (2018), Scientific Reports
DOI: 10.6084/m9.figshare.5863431.v1
title: Longitudinal demographic study of wild populations of African annual killifish

description: data in support of the analyses in Vrtilek et al. (2018), Scientific Reports
DOI: 10.6084/m9.figshare.5863416
title: Data supporting Sheppard et al. (2018) Ecology Letters

description: These data files support the following publication:<br>Catherine E. Sheppard, Richard Inger, Robbie A. McDonald, Sam Barker, Andrew L. Jackson, Faye J. Thompson, Emma I. K. Vitikainen, Michael A. Cant, Harry H. Marshall (2018). Intragroup competition predicts individual foraging specialisation in a group-living mammal. <i>Ecology Letters </i>21, 665-673.<br>Please see read me file for more information
DOI: 10.6084/m9.figshare.5863416.v1
title: Data supporting Sheppard et al. (in press) Ecology Letters

description: These data files support the following publication:<br>Catherine E. Sheppard, Richard Inger, Robbie A. McDonald, Sam Barker, Andrew L. Jackson, Faye J. Thompson, Emma I. K. Vitikainen, Michael A. Cant, Harry H. Marshall (In Press). Intragroup competition predicts individual foraging specialisation in a group-living mammal. <i>Ecology Letters</i><br>Please see read me file for more information
DOI: 10.6084/m9.figshare.5863416.v3
title: Data supporting Sheppard et al. (2018) Ecology Letters

description: These data files support the following publication:<br>Catherine E. Sheppard, Richard Inger, Robbie A. McDonald, Sam Barker, Andrew L. Jackson, Faye J. Thompson, Emma I. K. Vitikainen, Michael A. Cant, Harry H. Marshall (2018). Intragroup competition predicts individual foraging specialisation in a group-living mammal. <i>Ecology Letters </i>21, 665-673.<br>Please see read me file for more information
DOI: 10.6084/m9.figshare.5863416.v2
title: Data supporting Sheppard et al. (in press) Ecology Letters

description: These data files support the following publication:<br>Catherine E. Sheppard, Richard Inger, Robbie A. McDonald, Sam Barker, Andrew L. Jackson, Faye J. Thompson, Emma I. K. Vitikainen, Michael A. Cant, Harry H. Marshall (In Press). Intragroup competition predicts individual foraging specialisation in a group-living mammal. <i>Ecology Letters</i><br>Please see read me file for more information
DOI: 10.6084/m9.figshare.5863407
title: Data_Spears et al_InducedReflection.xlsx

description: Data set for the manuscript Can induced reflection affect moral decision-making?<br>We conducted an experiment in which participants completed either the Cognitive Reflection Test (Task 1) or the Berlin Numeracy Test (Task 2), before answering moral dilemmas (Crying Baby, Submarine, and Rescue). For half of the participants, we provided feedback (Feedback = 2) for the wrong answer (Task_Correct = 0), together with a clue to help them find the correct response. After this, participants had the opportunity to change their previous response (Task Feedback Response). We measured acceptability rating of the proposed (utilitarian) action (Response Average). Further details are available upon request. <br>
DOI: 10.6084/m9.figshare.5863407.v1
title: Data_Spears et al_InducedReflection.xlsx

description: Data set for the manuscript Can induced reflection affect moral decision-making?<br>We conducted an experiment in which participants completed either the Cognitive Reflection Test (Task 1) or the Berlin Numeracy Test (Task 2), before answering moral dilemmas (Crying Baby, Submarine, and Rescue). For half of the participants, we provided feedback (Feedback = 2) for the wrong answer (Task_Correct = 0), together with a clue to help them find the correct response. After this, participants had the opportunity to change their previous response (Task Feedback Response). We measured acceptability rating of the proposed (utilitarian) action (Response Average). Further details are available upon request. <br>
DOI: 10.6084/m9.figshare.5863311
title: Inelastic Neutron scattering data from Aspirin locally disrupts the liquid-ordered phase

description: Neutron scattering raw data are given in IL format.
DOI: 10.6084/m9.figshare.5863311.v1
title: Inelastic Neutron scattering data from Aspirin locally disrupts the liquid-ordered phase

description: Neutron scattering raw data are given in IL format.
DOI: 10.6084/m9.figshare.5863275
title: Supplementary Material for: Hypoxia-Induced TPM2 Methylation is Associated with Chemoresistance and Poor Prognosis in Breast Cancer

description: <b><i>Background/Aims:</i></b> Tropomyosin-2 (TPM2) plays important roles in functions of the cytoskeleton, such as cytokinesis, vesicle transport, cell proliferation, migration and apoptosis,and these functions imply that TPM2 also plays a role in cancer development. Indeed, it has been shown that TPM2 plays a critical role in some cancers. However, the role of TPM2 in breast cancer is still poorly characterized. Thus, we explored the role of TPM2 in breast cancer. <b><i>Methods:</i></b> We analysed TPM2 expression and its correlation with the clinicopathological features in breast cancer. Then, we examined the influence of hypoxia on TPM2 expression and methylation status using bisulfite sequencing PCR. Furthermore, we performed TPM2-mediated migration and invasion assays in the context of hypoxia and examined changes in matrix metalloproteinase-2 (MMP2) expression. Finally, we detected the influence of TPM2 on survival and chemotherapy drug sensitivity. <b><i>Results:</i></b> We found that TPM2 expression is down-regulated in breast cancer cells compared to that in normal breast cells. The data from TCGA supported these results. Promoter methylation of TPM2, which could be induced by hypoxia, was responsible for its low expression. Hypoxia might regulate cell invasiveness partly by TPM2 down-regulation-mediated changes of MMP2 expression. Importantly, low TPM2 expression was correlated with lymph node metastasis (<i>P</i>=0.031), tumour node metastasis stage (<i>P</i>=0.01), histological grade (<i>P</i>=0.037), and shorter overall survival (<i>P</i>=0.028). Univariate and multivariate analyses indicated that TPM2 was an independent predictor in breast cancer patients. Paclitaxel chemotherapy did not benefit patients with low TPM2 expression (<i>P</i>&lt;0.0001). TPM2 knockdown significantly reduced cell sensitivity to paclitaxel. <b><i>Conclusion:</i></b> TPM2 is a potential novel tumour suppressor gene in breast cancer. TPM2 is associated with poor survival and chemoresistance to paclitaxel in breast cancer, and TPM2 may represent a promising therapeutic gene target for breast cancer patients with chemoresistance.
DOI: 10.6084/m9.figshare.5863248
title: Matlab code to generate Figure 2B from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 2B.
DOI: 10.6084/m9.figshare.5863248.v1
title: Matlab code to generate Figure 2B from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 2B.
DOI: 10.6084/m9.figshare.5863245
title: Model of the circuit in Figure 2A from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the phosphorylation-based controller.
DOI: 10.6084/m9.figshare.5863245.v1
title: Model of the circuit in Figure 2A from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the phosphorylation-based controller.
DOI: 10.6084/m9.figshare.5863242
title: Matlab code to generate Figure 2D from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 2D.
DOI: 10.6084/m9.figshare.5863242.v1
title: Matlab code to generate Figure 2D from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 2D.
DOI: 10.6084/m9.figshare.5863239
title: Model of the type 1 ICM in Figure 1 from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the type 1 ICMs in Figure 1A-C.
DOI: 10.6084/m9.figshare.5863239.v1
title: Model of the type 1 ICM in Figure 1 from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the type 1 ICMs in Figure 1A-C.
DOI: 10.6084/m9.figshare.5863233
title: Model of the circuit in Figure 2C from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the sRNA-based controller.
DOI: 10.6084/m9.figshare.5863233.v1
title: Model of the circuit in Figure 2C from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the sRNA-based controller.
DOI: 10.6084/m9.figshare.5863230
title: Model of the type 2 ICM in Figure 1 from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the type 2 ICMs in Figure 1A-C.
DOI: 10.6084/m9.figshare.5863230.v1
title: Model of the type 2 ICM in Figure 1 from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab ODE model of the type 2 ICMs in Figure 1A-C.
DOI: 10.6084/m9.figshare.5863227
title: Matlab code to generate Figure 1D from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 1D.
DOI: 10.6084/m9.figshare.5863227.v1
title: Matlab code to generate Figure 1D from Realizing ‘integral control’ in living cells: how to overcome leaky integration due to dilution?

description: Matlab code that generates Figure 1D.
DOI: 10.6084/m9.figshare.5863158
title: Additional file 3: of Unearthing new genomic markers of drug response by improved measurement of discriminative power

description: Number of training cell lines (nTrain), prevalence of gene mutation, p-values, number of test set cell lines (nTest) and MCC on the test set (MCC.tst) for each significant drug-gene association from the MANOVA test evaluated on the test set. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.5863158.v1
title: Additional file 3: of Unearthing new genomic markers of drug response by improved measurement of discriminative power

description: Number of training cell lines (nTrain), prevalence of gene mutation, p-values, number of test set cell lines (nTest) and MCC on the test set (MCC.tst) for each significant drug-gene association from the MANOVA test evaluated on the test set. (XLS 66Â kb)