cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3630218_d9
title: Additional file 1: Table S1. of Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome

description: Tissue Composition. (XLS 6Â kb)
DOI: 10.6084/m9.figshare.c.3630218_d10
title: Additional file 2: Table S2. of Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome

description: List of Differentially Expressed Genes (RNA-seq). (XLS 50Â kb)
DOI: 10.48366/r789970
title: Advancements in PRISMA Hyperspectral Imaging: From Deforestation Detection to Methane Estimation

description: This collection highlights the cutting-edge applications of PRISMA hyperspectral data for environmental and agricultural monitoring. The studies focus on PRISMA's ability to detect deforestation in the Amazon, estimate methane columns, quantify non-photosynthetic vegetation, and improve forest cover classification using machine learning. These advancements demonstrate the unique potential of PRISMA for enhancing land management and ecological monitoring, offering researchers, remote sensing professionals, and students valuable tools for tackling environmental challenges.
DOI: 10.15468/dl.8scscr
title: Occurrence Download

description: A dataset containing 607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles bancroftii Giles, 1902"
 ]
}

 The dataset includes 607 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033797-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630278_d4
title: Additional file 1: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of PbWRKY genes. (XLS 1392Â kb)
DOI: 10.6084/m9.figshare.c.3630293_d1
title: Additional file 2: of Relationship between early language skills and the development of inattention/hyperactivity symptoms during the preschool period: Results of the EDEN mother-child cohort

description: The dataset supporting the conclusion of this article. (XLSX 148Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d6
title: Additional file 11: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of genes in enriched GO terms. (XLS 290Â kb)
DOI: 10.6084/m9.figshare.c.3630296_d2
title: Additional file 3: Table S2. of Leptin and insulin up-regulate miR-4443 to suppress NCOA1 and TRAF4, and decrease the invasiveness of human colon cancer cells

description: Nanostring array results - all miRNA expression profiling data. (XLSX 174Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d8
title: Additional file 9: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of genes in co-expression gene clusters. (XLS 1128Â kb)
DOI: 10.6084/m9.figshare.c.3630257_d12
title: Additional file 1: of High variability of HIV and HCV seroprevalence and risk behaviours among people who inject drugs: results from a cross-sectional study using respondent-driven sampling in eight German cities (2011â  14)

description: Sample proportion and estimated population proportion estimates for all variables. (XLS 75Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d9
title: Additional file 8: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: Protein sequences of PbWRKY TFs. (TXT 42Â kb)
DOI: 10.15468/dl.yreyyg
title: Occurrence Download

description: A dataset containing 2256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Geometry POLYGON ((-98.93333 19.63333, -98.81667 19.63333, -98.81667 19.75, -98.93333 19.75, -98.93333 19.63333))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 2256 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033798-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630326_d6
title: Additional file 14: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Putative transposase genes encoded by Ab, MAC and MR. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3630344_d1
title: Additional file 3: Table S3. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

description: Table of all pairwise ANIm values. Table of pairwise ANIm values computed with JSpecies [72]. (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3630350_d1
title: Additional file 1: of Transcriptomic changes of Legionella pneumophila in water

description: Lp genes that are significantly up- or down-regulated in water. (XLSX 366 kb)
DOI: 10.6084/m9.figshare.c.3630326_d7
title: Additional file 13: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: RIP frequency index in Ab, MAC and MR genomes. (XLS 8Â kb)
DOI: 10.6084/m9.figshare.c.3630311_d7
title: Additional file 7: of The role of the aryl hydrocarbon receptor in the development of cells with the molecular and functional characteristics of cancer stem-like cells

description: The data sets supporting the results of each of the figures in this article are included within this excel document. For further information, please contact the corresponding author. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3630326_d8
title: Additional file 10: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by CE family. (XLS 15Â kb)
DOI: 10.15468/dl.wcaeqa
title: Occurrence Download

description: A dataset containing 2631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles barbirostris Wulp, 1884"
 ]
}

 The dataset includes 2631 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033799-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630326_d9
title: Additional file 8: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by GT family. (XLS 23Â kb)
DOI: 10.6084/m9.figshare.c.3630323_d5
title: Additional file 1: of The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses

description: Names, gene accession numbers and sequences of the P. pinaster NAC proteins. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3630326_d10
title: Additional file 12: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Summary of RIP signatures in Ab, MAC and MR genomes. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d11
title: Additional file 4: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: List of accession numbers for predicted NRPS gene cluster sequences identified in Ab, MAC and MR genomes. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d12
title: Additional file 7: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by GH family. (XLS 67Â kb)
DOI: 10.6084/m9.figshare.c.3630344_d6
title: Additional file 2: Table S2. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

description: Information regarding publicly available genomes examined in this study. Table of information regarding genomes included in this study. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3630404_d3
title: Additional file 3: Table S1. of A path reconstruction method integrating dead-reckoning and position fixes applied to humpback whales

description: Posterior statistics and R ^ $$ \widehat{R} $$ values. Table with the mean, SD, and 95 % CI for the posterior distributions of parameters σ x , σ y , v x,1 cor , v y,1 cor , x x,1, x y,1, and the values of convergence statistic R ^ $$ \widehat{R} $$ . (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3630425_d1
title: Additional file 1 of RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

description: Output files. Each output format of the following RDF resources: i) the CHEBI database, ii) Reactome (Biopax level 3) database, iii) UniProt database, iv) SAPP. (1,572 kb)
DOI: 10.6084/m9.figshare.c.3630437_d1
title: Additional file 1: of A tailored intervention to implement guideline recommendations for elderly patients with depression in primary care: a pragmatic cluster randomised trial

description: A complete presentation of our analysis, with univariate and multivariate mixed models, including the four effect modifiers. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3630440_d1
title: MOESM1 of Transcriptomic alterations in the heart of non-obese type 2 diabetic Goto-Kakizaki rats

description: Additional file 1. Raw data of the DNA microarray.
DOI: 10.6084/m9.figshare.c.3630404_d6
title: Additional file 1: of A path reconstruction method integrating dead-reckoning and position fixes applied to humpback whales

description: Example data set, JAGS model, and MATLAB code. Compressed file including the data set of whale 11, the JAGS model code, and example MATLAB code to process the data, fit the model, and reconstruct the high-resolution track shown in Fig.Â 3. (RAR 2041 kb)
DOI: 10.6084/m9.figshare.c.3630449_d1
title: Additional file 3 of Does conservation account for splicing patterns?

description: ISREs with high affinity for RBPs. (CSV 1 kb)
DOI: 10.5281/zenodo.14453502
title: Results of the Termination Competition 2014 - Raw Data
DOI: 10.5281/zenodo.14453503
title: Results of the Termination Competition 2014 - Raw Data
DOI: 10.6084/m9.figshare.c.3630488_d3
title: Additional file 9: Table S1. of Analysis of DNA methylation landscape reveals the roles of DNA methylation in the regulation of drug metabolizing enzymes

description: Levels of DNA methylation around the first exons of the UGT1A isoforms. The nine UGT1A isoforms were classified into two groups (hepatic and intestinal types). The levels of DNA methylation at individual CpG sites of the first exons were expressed as β values and separately compared between 18 adult livers and one normal small intestine (NSI) or one normal fetal liver (NLF). The β values colored in red were statistically higher than the median of β values of normal adult livers. The β values colored in blue were statistically lower than the median of β values of normal adult livers. The CpG sites proximal to TSS200 region (except TSS1500 region) were indicated by bold frame. (XLSX 15.2 KB)
DOI: 10.6084/m9.figshare.c.3630503_d1
title: Additional file 5: Supplemental Tables. of Iron homeostasis in Arabidopsis thaliana: transcriptomic analyses reveal novel FIT-regulated genes, iron deficiency marker genes and functional gene networks

description: Table S1. List of genes that were found regulated in the inter-line and intra-line comparisons in six-day-old seedlings and roots of six-week-old plants and that were found in iron homeostasis-related clusters after hierarchical clustering of the seedling, root and combined expression data. Table S2. Lists of input genes and the output genes before and after each of the four filtering steps. The lists are sorted alphabetically. Table S3. Expression patterns of genes that are induced by FIT in six-day-old seedlings. The genes marked red were found regulated in seedlings but not in the root samples. The genes marked yellow have previously been associated with iron homeostasis. For comparison, the respective root expression patterns have been added to the right. Additionally, we have added a column (S) with selected publications in which mutants have been investigated or which establish a direct link to iron homeostasis. Table S4. Expression patterns of genes that are induced by FIT in roots of six-week-old plants. The genes marked red were found regulated in the root samples but not in seedlings. For comparison the respective seedling expression patterns have been added to the right. Table S5. Expression patterns of genes that are repressed by FIT in six-week-old roots. The genes marked red were found regulated in the root samples but not in seedlings. For comparison the respective seedling expression patterns have been added to the right. Table S6. Expression patterns of genes that are repressed by FIT in six-day-old seedlings. The genes marked red were found regulated in seedlings but not in the root samples. For comparison the respective seedling expression patterns have been added to the right. Table S7. List of genes that were found in common regulons with ≥ 4 nodes in the co-expression analysis of iron deficiency-induced genes in the virtual dataset. The numbers correspond to the numbering in Fig. 7. Table S8. List of primers which we used to validate the expression data of some iron homeostasis-related genes. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3630509_d1
title: Additional file 9: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: KEGG description of core proteins. (XLSX 515 kb)
DOI: 10.6084/m9.figshare.c.3630518_d1
title: Additional file 1: of The adherence paradox: guideline deviations contribute to the increased 5-year survival of breast cancer patients

description: Common quality indicators valid across time intervals. Quality indicators of guideline adherence and guideline divergence valid in the time-intervals 1996â  97 or 2003â  04. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630518_d2
title: Additional file 2: of The adherence paradox: guideline deviations contribute to the increased 5-year survival of breast cancer patients

description: Quality indicators valid in each time-interval. Quality indicators of guideline adherence and guideline divergence valid in each time interval 1996â  97 and 2003â  04. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630509_d2
title: Additional file 6: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Eptiope analysis of 13 prioritized proteins. B-cell epitope predictions, T-cell epitope location, antigenicity, NetsurfP exposure of epitopes. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3630548_d1
title: Additional file 1: of Outcomes of TB treatment in HIV co-infected TB patients in Ethiopia: a cross-sectional analytic study

description: Cleaned data on Outcomes of TB treatment Ethiopia. This is the cleaned set of data of the 575 individual study participants that were included in the analysis. It shows the age and gender of the participants, their clinical characteristics and medical care received, and their individual health outcomes. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3630542_d3
title: MOESM5 of Identification of brain-enriched proteins in the cerebrospinal fluid proteome by LC-MS/MS profiling and mining of the Human Protein Atlas

description: Additional file 5: Table 3. 78 tissue-enriched and group-specific candidates.
DOI: 10.6084/m9.figshare.c.3630509_d9
title: Additional file 3: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Essential proteins: List of essential proteins (956) identified by employing DEG. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3630542_d5
title: MOESM4 of Identification of brain-enriched proteins in the cerebrospinal fluid proteome by LC-MS/MS profiling and mining of the Human Protein Atlas

description: Additional file 4: Table 2. Group-enriched proteins of secreted/membrane origin.
DOI: 10.15468/dl.92prfv
title: Occurrence Download

description: A dataset containing 108933 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CHSC - Ahart Herbarium, CSU Chico - Vascular Plants"
 ]
}

 The dataset includes 108933 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033779-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630524_d5
title: Additional file 7: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of G-, L- and C-type LecRLKs in moss, shrub, corn, soybean and Eucalyptus. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3630560_d1
title: Additional file 4: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Significant transcripts of Carbohydrate Active Enzymes (CAZy) by the presence of 10 different model oligosaccharides. Regulation is indicated by arrows. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3630560_d2
title: Additional file 2: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: The number of genes per GO term found to be significantly different in expression between each of the 10 sugars and glucose. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3630524_d6
title: Additional file 5: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of L-type PtLecRLKs. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630560_d3
title: Additional file 3: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: The fraction of the total number of genes (that a pathway consists) that was found significantly up- and/or down- regulated in each sugar compared to glucose for 66 metabolic pathways. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.26879440
title: Sacred forests as repositories of local biodiversity in Africa: A systematic review

description: Sacred forests (SFs) also known as sacred groves are common in many parts of the world and have been protected through traditional methods. In Africa, the number of published studies on the significance of SFs in biodiversity conservation has constantly increased. This offers an opportunity to deploy a systematic review. This study aimed to carry out the first review of SFs in Africa to apply a systematic approach. A systematic literature search on the role of SFs in biodiversity conservation was conducted on Scopus and Google Scholar databases, and additional searches of articles were carried out manually in the reference lists. The search produced 61 papers in 19 countries in Africa that were published between 1995 and 2022. Majority of studies on SFs (44%; n = 27) reported in the reviewed literature were from West Africa as compared to other regions. Methodologically, 80% (n = 49) of reviewed studies lack comparative data with non-sacred areas. A great majority of papers (69%; n = 42) focused on the role of SFs in the protection of plant species, particularly at local/regional scales with no study conducted at international level. Although SFs have great potential for <i>in situ</i> conservation, they are increasingly threatened by anthropogenic pressure. To avoid further threats to SFs, custodians should be legally recognised as owners of SFs and efforts should be made to ensure that SFs are granted juristic personhood. Government should support the protection of SFs and recognise them in a way similar to the recognition given formal protected areas as they also protect vulnerable, threatened and critically endangered species. Existing policies that embrace cultural and religious practices should be implemented to help protect the remaining SFs.
DOI: 10.6084/m9.figshare.26879440.v1
title: Sacred forests as repositories of local biodiversity in Africa: A systematic review

description: Sacred forests (SFs) also known as sacred groves are common in many parts of the world and have been protected through traditional methods. In Africa, the number of published studies on the significance of SFs in biodiversity conservation has constantly increased. This offers an opportunity to deploy a systematic review. This study aimed to carry out the first review of SFs in Africa to apply a systematic approach. A systematic literature search on the role of SFs in biodiversity conservation was conducted on Scopus and Google Scholar databases, and additional searches of articles were carried out manually in the reference lists. The search produced 61 papers in 19 countries in Africa that were published between 1995 and 2022. Majority of studies on SFs (44%; n = 27) reported in the reviewed literature were from West Africa as compared to other regions. Methodologically, 80% (n = 49) of reviewed studies lack comparative data with non-sacred areas. A great majority of papers (69%; n = 42) focused on the role of SFs in the protection of plant species, particularly at local/regional scales with no study conducted at international level. Although SFs have great potential for <i>in situ</i> conservation, they are increasingly threatened by anthropogenic pressure. To avoid further threats to SFs, custodians should be legally recognised as owners of SFs and efforts should be made to ensure that SFs are granted juristic personhood. Government should support the protection of SFs and recognise them in a way similar to the recognition given formal protected areas as they also protect vulnerable, threatened and critically endangered species. Existing policies that embrace cultural and religious practices should be implemented to help protect the remaining SFs.
DOI: 10.15468/dl.9zhy6b
title: Occurrence Download

description: A dataset containing 19620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON ((-91.79444 16.07778, -91.62778 16.07778, -91.62778 16.17222, -91.79444 16.17222, -91.79444 16.07778))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 19620 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033800-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630572_d9
title: Additional file 1: Table S1. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Unadjusted associations between participant characteristics and BMI across the MESA ethnic groups. (XLSX 51 kb)