cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8mc44/10
title: PCA scores 2

description: Principal Component Analysis scores based on eight leaf characters observed from 201 specimens.
DOI: 10.5061/dryad.8mc44/11
title: Morphological matrix2

description: Data matrix of georefences of the 201 specimens of the Vauquelinia corymbosa complex along with their measures of sixteen morphometric characters.
DOI: 10.5061/dryad.8mc44/3
title: Matrix1 used in Parsimony analyses

description: Matrix of sixteen morphological characters of 32 populations of the subspecies of Vauquelinia corymbosa used in  Parsimony analyses.
DOI: 10.5061/dryad.8mc44/4
title: Matrix2 used in Parsimony analyses

description: Matrix of eight morphological leaf characters of 32 populations of the subspecies of Vauquelinia corymbosa used in Parsimony analyses.
DOI: 10.5061/dryad.8mc44/5
title: Morphological matrix1

description: Matrix of sixteen morphological characters observed from 201 specimens of the Vauquelinia corymbosa complex.
DOI: 10.5061/dryad.8mc44/6
title: Matrix of morphometric distances

description: Matrix of morphometric distances of sixteen morphological character of 201 specimens of the subspecies of Vauquelinia corymbosa utilized in Mantel test.
DOI: 10.5061/dryad.8mc44/7
title: Parsimonious trees 1

description: Set of most parsimonious trees retained in Parsimony analysis based on a data matrix of sixteen morphological characters of 32 populations of the subspecies of Vauquelinia corymbosa.
DOI: 10.5061/dryad.8mc44/8
title: Parsimonious trees 2

description: Set of most parsimonious trees retained in Parsimony analysis based on a data matrix of eight leaf morphological characters of 32 populations of the subspecies of Vauquelinia corymbosa.
DOI: 10.5061/dryad.9c50s/11
title: bayescan_bie&occ_in

description: BAYESCAN bie & occ parent input file.
DOI: 10.5061/dryad.9c50s/12
title: bayescan_bie&fum_in

description: BAYESCAN bie & fum parent input file.
DOI: 10.5061/dryad.9c50s/13
title: blast_bayescan&bgcoutlier_outlier&10kbflanks_in

description: BLAST and BLAST2GO input file.
DOI: 10.5061/dryad.9c50s/14
title: parent_samplelist_bie_pcadapt

description: Sample list of bie parent population, determined using PCADAPT.
DOI: 10.5061/dryad.9c50s/15
title: parent_samplelist_occ_pcadapt

description: Sample list of occ parent population, determined using PCADAPT.
DOI: 10.5061/dryad.9c50s/16
title: parent_samplelist_fum_pcadapt

description: Sample list of fum parent population, determined using PCADAPT.
DOI: 10.5061/dryad.9c50s/17
title: hybridzone_samplelist_bie-occ-fum_pcadapt

description: Sample list of bie-occ-fum hybrid populations, determined using PCADAPT.
DOI: 10.5061/dryad.9c50s/18
title: hybridzone_samplelist_bie-occ_pcadapt&hiest

description: Sample list of bie-occ hybrid zone, determined using PCADAPT and HIEST.
DOI: 10.5061/dryad.b273t/1
title: Coyote and red fox scat contents

description: This file contains data of percent volume of items found in 471 coyote and red fox scats collected in interior Alaska, winter 2013-2014. "Scat number" refers to the sample number, "Study area" refers to the study area from which the scat was collected, "Species" refers to the species that deposited the scat, as determined by molecular analyses. The remaining categories and values refer to the percent volume of each item found in that scat as determined by visual inspection of contents  and  microscopic evaluation of hair fragments. See methods of Sivy et al. 2017 for further details.
DOI: 10.5061/dryad.b8s93/1
title: Archived data_Functional Ecology_Gliksman
DOI: 10.5061/dryad.bb775/1
title: Nestdata_Dryad

description: Nest characteristic information for four raptor species (White-backed vulture, Lappet-faced vulture, White-headed vulture, and Tawny eagle) in Masai Mara National Reserve, Kenya
DOI: 10.5061/dryad.bq4nn/1
title: Hempson.et.al_2017_FuncEcol_Data
DOI: 10.5061/dryad.cr785/1
title: Baruffaldi-Andrade-NeutralFitnessOutcomes-data

description: Data from "Neutral fitness outcomes contradict inferences of sexual ‘coercion’ derived from male’s damaging mating tactic in a widow spider". Baruffaldi & Andrade. File includes mating behaviour; fecundity, fertility, and longevity of females; and responses of males to sex pheromones.
DOI: 10.5061/dryad.ct182/1
title: Condition-dependent female preference for male genitalia length is based on male reproductive tactics

description: This data set contains a copy of the main data file exactly as used for this paper and was obtained in the laboratory from fish collected in the field. This data file was made in excel and can be converted to most formats of different statistical programs. the same document has a description of the included variables.
Please feel free to contact me if you have suggestions, find errors, inconsistencies, or any other bug in the file. As well, please let me know about your uses of this data.
DOI: 10.5061/dryad.d08g0/1
title: b2g_PN_ref_transcriptome_annotation

description: Blast2Go annotation of spawning male plainfin midshipman (Porichthys notatus) preoptic area-anterior hypothalamus
DOI: 10.5061/dryad.db11f/1
title: Pollinator and seed data.

description: Pollinator visitations (sheet1), Pollinator observation sessions (sheet2), fruit counts (sheet3), and seed counts (sheet4)
DOI: 10.5061/dryad.df564/40
title: nobomaxenteapnatureserve

description: Collated and spatially rarefied occurrence locations of northern bobwhite used to create ecological niche models through Maxent. Data were collated from both Breeding Bird Survey and eBird databases.
DOI: 10.5061/dryad.df564/41
title: scqu_maxentfileeap

description: Collated and spatially rarefied occurrence locations of scaled quail used to create ecological niche models through Maxent. Data were collated from both Breeding Bird Survey and eBird databases.
DOI: 10.5061/dryad.f6506/1
title: Estimations from HP images

description: Estimated parameters from traditional and smartphone hemispherical images. Data used for analysis and GLMMs calibration.
DOI: 10.5061/dryad.f6506/2
title: Smartphone images

description: Diagonal smartphone images taken with a Samsung Galaxy Grand Prime smartphone in the same plot (East-West and North-South orientation), and resulting merged picture from Hugin processing.
DOI: 10.5061/dryad.f6506/3
title: Hugin processing

description: Scripts for writing and running in a batch mode the Hugin files for all your paired smartphone diagonal pictures and merge them.
DOI: 10.5061/dryad.f6506/4
title: EnhanceHP thresholding for smartphone pictures

description: Script for batch processing of all diagonals and merged smartphone pictures using the package caiman. Includes comments to adjust the specific settings.
DOI: 10.5061/dryad.gj922/1
title: grey_whale_bone_sequences

description: Data file contains sample id, collection location, cyt-b and control region sequences, and species identification for the bones analyzed in this study.
DOI: 10.5061/dryad.hg53s/1
title: short-term exp phyto

description: Phytoplankton community data (cell counts) after 24 hour grazing experiment
DOI: 10.5061/dryad.mc450/1
title: figures of Angelica muliensis

description: diagram, photos, parafin section picture
DOI: 10.5061/dryad.mh577/1
title: Data Scaup

description: Excel file with Scaup Data
DOI: 10.5061/dryad.mh577/2
title: Data ruddy ducks
DOI: 10.5061/dryad.nd5hf/1
title: Data from: Temporal constraints on the potential role of fry odors as cues of past reproductive success for spawning lake trout

description: Data are from the chemistry, electrophysiology, and laboratory behavior experiments.  Chemistry data are in nanomolar concentrations. Time data for behavior experiments are in seconds.
DOI: 10.5061/dryad.pj784/1
title: The isotopic data of damselfish assemblages from Madagascar, Dongsha and Moorea

description: Values of carbon and nitrogen stable isotope ratios of 583 damselfish individuals, which belong to 55 species and were caught during three respective sampling campaigns: the Great Reef of Madagascar in November 2005 (Frédérich et al. 2009), Dongsha Atoll in May-June 2015 (Present study) and Moorea Island in April-June 2014 (Gajdzik et al. 2016).
DOI: 10.5061/dryad.q2v22/1
title: Pittosporum roimata ITS alignment

description: Alignment of nrITS sequences
DOI: 10.5061/dryad.r726b/1
title: Simulation model for local adaptation by parasites

description: This is a computer simulation, written in Excel.  Instructions for running the simulation occur on the first tab, called "Instructions."  The variable names are as defined in the published paper in Journal of Heredity.
DOI: 10.5061/dryad.t3j32/1
title: Cambronero_etal_microsatellite_genotyping

description: Cambronero_etal_microsatellite_genotyping: microsatellite genotyping results for the genotypes used in the study obtained from 13 microsatellite loci arranged in two multiplexes. The genotype IDs are as in Orsini et al, 2016 Molecular Ecology. The microsatellite loci were first published in Jansen et al, 2010 Molecular Ecology Resources as part of a panel of 84 microsatellites. -9 indicates missing data.
DOI: 10.5061/dryad.td0g3/1
title: core datation

description: Data for the core datation
DOI: 10.5061/dryad.vv469/42
title: imputed-seq-genotypes-12k-Chr6.88540000-89540000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr3:89.04 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/43
title: imputed-seq-genotypes-12k-Chr7.8270000-9270000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr7:8.77 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/44
title: imputed-seq-genotypes-12k-Chr10.1640000-2640000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr10:2.14 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/45
title: imputed-seq-genotypes-12k-Chr11.62950000-63950000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr11:63.45 LY QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/46
title: imputed-seq-genotypes-Chr14.1270000-2270000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr14:1.77 LY QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/47
title: imputed-seq-genotypes-12k-Chr15.27860000-28860000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr15:28.36 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/48
title: imputed-seq-genotypes-12k-Chr16.24490000-25490000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr16:24.99 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/49
title: imputed-seq-genotypes-12k-Chr16.67270000-68270000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr16:67.77 LC QTL, for 12,000 animals.
DOI: 10.5061/dryad.vv469/50
title: imputed-seq-genotypes-12k-Chr17.55970000-56970000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr17:56.47 LC QTL, for 12,000 animals.
DOI: 10.17632/cvf5df757g.1
title: Data for: Water transport and ion rejection investigation for application of cyclic peptide nanotubes to forward osmosis process: a simulation study

description: Supplementary information
DOI: 10.17632/cvf5df757g.2
title: Data for: Water transport and ion rejection investigation for application of cyclic peptide nanotubes to forward osmosis process: a simulation study

description: Supplementary information
DOI: 10.17632/ysw85763bb.2
title: Data for: Infants reason about deserving agents: A test with distributive actions

description: Data set including main results from the reported experiment - see paper for method details.
DOI: 10.5061/dryad.1h2h6/1
title: Stable isotope values through time for four Great Basin desert mice

description: Stable isotope data from mouse bone collagen, arrayed by stratum at Two Ledges Chamber, NV.  Stratum age represents years BP unless otherwise noted.  AMS 14C dates from bone collagen were calibrated using OxCal 4.1 and the IntCal 09 calibration curve.  Age estimates represent the highest probability peak obtained from the Bayesian posterior probability distribution associated with date calibration.  Age type refers to the following: (a) known collection year, (b) known by AMS 14C dates, (c) inferred from a combination of AMS 14C dates and spline function estimate, (d) undated stratum age inferred from a spline function.  δ13C_2013 indicates carbon data Seuss-corrected to 2013 CE.
DOI: 10.5061/dryad.1t3r4/10
title: Dataset S4

description: Phylogenetic trees used in our analyses, in Newick format. The main trees are found in Dinosaur trees Benson 2017.tre. Other trees are timescaled subsets of these trees, described with reference to a timescaling method (mbl1, cal3, Hedman) and clade name (Dinosauria, Sauropodomorpha, Ornithischia, Theropoda).
DOI: 10.5061/dryad.1t3r4/11
title: Scripts S1

description: Functions of R version 3.3.3 used in Benson et al. (2017) Cope’s rule and the adaptive landscape of dinosaur body size evolution.
DOI: 10.5061/dryad.1t3r4/4
title: Appendix S4

description: Diagrams illustrating trajectories of stepwise-AICc and stepwise-pBIC searches following the SUFACE algorithm and resulting regime configurations.
DOI: 10.5061/dryad.1t3r4/5
title: Appendix S5 phenograms

description: Phenograms illustrating regime configurations mapped to phylogenies evolving in body size space through time.
DOI: 10.5061/dryad.1t3r4/6
title: Dataset S1

description: Measurements, metadata and body mass estimates for Dinosauria.
DOI: 10.5061/dryad.1t3r4/7
title: Dataset S2

description: AICc scores for trend-based model fits compared to Brownian motion based on our phylogenies. For comparison to SURFACE and OUwie model fits.
DOI: 10.5061/dryad.1t3r4/8
title: Dataset S3

description: AICc scores and model fits for OU and other models implemented in OUwie.
DOI: 10.5061/dryad.1t3r4/9
title: Phylogenetic trees

description: Phylogenetic trees used in our analyses, in Newick format. The main trees are found in Dinosaur trees Benson 2017.tre. Other trees are timescaled subsets of these trees, described with reference to a timescaling method (mbl1, cal3, Hedman) and clade name (Dinosauria, Sauropodomorpha, Ornithischia, Theropoda).
DOI: 10.5061/dryad.2ph6s/1
title: Sequence of unigene related with lipid metabolism

description: Sequence of unigenes related with lipid metabolism
DOI: 10.5061/dryad.348k2/12
title: PairwiseResults.034.056

description: Tab delimited file with pairwise test results and log fold changes in expression between HM034 and HM056 nodules containing E. medicae and E. meliloti
DOI: 10.5061/dryad.348k2/13
title: PairwiseResults.034.340

description: Tab delimited file with pairwise test results and log fold changes in expression between HM034 and HM340 nodules containing E. medicae and E. meliloti
DOI: 10.5061/dryad.3sq24/1
title: Nitrogen and phosphorus concentrations in forage and herbivore dung

description: The data file lists the nitrogen and phosphorus concentrations of the forage and herbivore dung used in Figure 1 in the paper. The data file consists of 3 sheets. Sheet 1 is the meta data explaining the column names in sheet 2 and 3. Sheet 2 contains the forage nutrient data of 4 N-fixing tree species (i.e., Acacia (Senegalia) brevispica, A. mellifera,
Acacia (Vachellia) drepanolobium, and A. gerrardii) and 4 C4-grass species (i.e., Brachiaria lachnantha, Pennisetum mezianum, P. stramineum, and Themeda triandra). Sheet 3 contains the dung nutrient data of 5 browser species (i.e., Guenther’s dikdik, eland, giraffe, greater kudu and Thomson’s gazelle) and 4 grazer species (African buffalo, Burchell’s zebra, Grevy’s zebra, and common warthog).
DOI: 10.5061/dryad.3vs6b/1
title: Data_set_D1

description: Data set including specimen information, body shape data (procrustes aligned landmark data and pairwise procrustes distances), functional raw measurements and PC outputs, taxonomic, environmental and group data, results from statistical tests (NPMANOVA and permutation) and image references.
DOI: 10.5061/dryad.4vm16/1
title: Psychological skills Data for PLOS ONE manuscript

description: Anonymized SPSS data from study participants across gender and skill level on four basic psychological skills (self-talk, imagery, goal-setting, relaxation). These skills were measured across a 7 day precompetition period.
DOI: 10.5061/dryad.5181v/1
title: S2 - raw data
DOI: 10.5061/dryad.5538k/1
title: Aiptasia and Symbiodinium mf105 (clade B) concatenated reference transcriptome

description: Concatenated reference transcriptome of both Exaiptasia pallida and Symbiodinium Clade B. Assembled using the de novo transcriptome assembler Trinity version 2.0.2 with default settings.
DOI: 10.5061/dryad.5j3cc/1
title: Rare bacteria affect plant performance data
DOI: 10.5061/dryad.5kc61/6
title: Juvenile fish condition from lab experiment

description: Body condition for all lab experiment juveniles, calculated as residuals from a length-weight regression and standardized to weight of a fish of average length.
DOI: 10.5061/dryad.61f2h/1
title: R script for generating results

description: The file included is a self-contained R script that was used to produce the results and images of the manuscript. Figures obtained with this script will not exactly match the ones of the paper due to the type of analyses performed, based on random parameterizations (within given parameter intervals) of dynamic models.
DOI: 10.5061/dryad.6sv46/1
title: data

description: Flower phenotype, pollinators' visitation data, and plant's fitness of Linum pubescens in two years (2010 - 2011) in Ramat Hanadiv (Carmel mountain, Israel).
DOI: 10.5061/dryad.73250/2
title: Dryad TKR Dataset without dates

description: This is a dataset of 2600 patients who underwent primary TKR between Jan 2013 to Jun 2014 in Singapore General Hospital. The purpose of this dataset was to investigate the relationship between preoperative anaemia, hospital length of stay, perioperative blood transfusion rate and 30-day readmission rate among patients who had undergone primary TKA.
DOI: 10.5061/dryad.7h3f6/20
title: backbone_trees.tar.gz

description: An archived folder containing two folders: The trees folder contains the original backbone trees and the list of outgroups for running parts II and III of the pipeline.  The blastdbs folder contains the fasta files to make the two BLAST databases (te original database for the start of part I of the pipeline, called forblast20150128b.fa and the individual databases for each locus with sequences that have been divided into exons for the end of part I of the pipeline).
DOI: 10.5061/dryad.7h3f6/21
title: suppl_methods_2018_08_19.pdf

description: Supplementary methods, focused on bait design and an expanded explanation of the pipeline.
DOI: 10.5061/dryad.7h3f6/22
title: Supplementary_Figures_new
DOI: 10.5061/dryad.7hm1m/1
title: Calibration Object File

description: The “20150615 Calibration file_20pt.csv” file contains the physical measurements in millimeters of our 20-point calibration object (coordinate system based on an origin point) and is used to calibrate a volume of space in which the object of interest moves in.
DOI: 10.5061/dryad.7hm1m/2
title: Spike Sorted Neural Data (time stamps of spiking)

description: Each file contains the spike timestamps of the units isolated from the extracellular data of a particular moth (M# refers to a particular moth). Each column represents a unit and each row corresponds to a timestamp of when a unit spiked. The last column of each file contains the unsorted spike timestamps, and therefore, was not used for further analyses. Spike sorting was performed using Offline Sorter V4 and timestamp data was exported from NeuroExplorer V5.
DOI: 10.5061/dryad.7hm1m/3
title: Spike Train Data Structures Resulting From White Noise Stimulus

description: The spike train data structure consists of a matrix in which each of the 30 columns represents the white noise stimulus segments and the 400,000 rows represent each of the sample indices (sample rate of 40kHz over 10 seconds results in 400,000 sample points). Furthermore, this matrix is binary in which the value “one” indicates the sample index that this unit spiked and zeros represent non-spiking indices. The two folders, “Base Spike Trains” and “NonBase Spike Trains”, contain the spike train data for the corresponding wing base and non-localized units. These data structures were created using Matlab code.
DOI: 10.5061/dryad.7hm1m/4
title: Wand Calibration Data

description: We verified the wing motion reconstruction data through cross validating that the measured length of a physical wand object can be reconstructed through 3D high-speed videography. The “20150615 Calibration file_20pt.csv” file contains the physical measurements of our calibration object and is used to calibrate the volume of space that the wand moved through. The “cal01_WandDLTcoefs.csv” file contains the calibrated volume coefficients. “M1_Wand.cine” and “M2_Wand.cine” are the recorded video files (using phantom software) that capture the wand movement through the calibrated space. “Digitized_Wandxyzpts.csv” contains the 3D coordinates of the wand position at each frame. The cameras were set at 1000 fps.The remaining files are output files not used in further analyses. Calibration and Digitization was performed with custom matlab codes by the Hedrick laboratory at UNC.
DOI: 10.5061/dryad.7hm1m/5
title: Wing Video and Reconstruction Data

description: The “UpSampled_Generalized Base Displacement.mat” and “Generalized Base Displacement.mat” files contain the generalized wing base displacement transformed from the wing tip displacement. The first file is upsampled so that the sampling rate of the data is 40 kHz, while the later file is sampled at 1 kHz. The “Tip Motor Stim.mat” and “Motor Tip Displacement.mat” files contain the wing tip displacements of one 10-second white noise segement (first file) and for 10 10-second white noise repeats (later file). Each tip displacement file is sample at 40 kHz. Each “Moth Wing Video” folder contains the 3D high-speed videography data of that moth wing. A total of four moth wings (2 males (files labeled with M16 or M27) and 2 females (files labeled with M26 or M28)) were used to transform their wing base and tip displacements into a generalizable wing base displacement. Each “Moth Wing Video” folder contains a “DLTcoefs.csv” file (calibration file), two “.cine” files (Video data of each camera sampled at 1000 fps), and a “xyzpts.csv” file that contains the reconstructed 3D coordinates of the digitized points at each frame. The remaining files are output files not used in further analyses. Calibration and Digitization was performed with custom matlab codes by the Hedrick laboratory at UNC. High-speed videography was conducted using phantom software.
DOI: 10.5061/dryad.851jr/1
title: Source code and data

description: The package provides Matlab code for the individual based model and approximate Bayesian computation based inference introduced in article "Assessing the dynamics of natural populations by fitting individual based models with approximate Bayesian computation" by Jukka Sirén, Luc Lens, Laurence Cousseau  and Otso Ovaskainen accepted for publication in Methods in Ecology and Evolution. The package includes also the White-starred robin data analyzed in the article.
DOI: 10.5061/dryad.8dd39/1
title: MrBayesBlock

description: Commands used for Bayesian Analyses
DOI: 10.5061/dryad.8dd39/2
title: suppFigureS1

description: Supplementary Figure S1. Bayesian, Maximum Likelihood, and Parsimony topologies of  the data from Hilton and Bateman (2006). The optimal tree with node support is shown for each method (a-c) as well as the topologies that are produced after nodes with &lt;0.5 support are collapsed to polytomies (d-f), and when nodes with &lt;0.8 support are collapsed (g-i).
DOI: 10.5061/dryad.8dd39/3
title: suppFigureS2

description: Supplementary Figure S2. Bayesian, Maximum Likelihood, and Parsimony topologies of the data from Luo et al. (2015). The optimal tree with node support is shown for each method  (a-c) as well as the topologies that are produced after nodes with &lt;0.5 support are collapsed to polytomies (d-f), and when nodes with &lt;0.8 support are collapsed (g-i).