cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15131/shef.data.23899131.v2
title: Examining Research Systems and Models for Local Government: A Systematic Review - Data extraction files.

description: We undertook a mapping review and time-constrained systematic review (in September-October 2020) to explore potential and existing models of local authority-based research systems. We searched databases, grey literature and references/citations of relevant sources, undertook systematic screening of titles, abstracts and full texts, and synthesised relevant data according to the characteristics of research systems, quality assessing for relevance, rigour and richness. We examined nine models in-depth and from these developed a typology of research systems. The review methods and findings will be published in the journal Evidence and Policy. The data deposited here detail the data extraction from the mapping review stage (in an Excel/CSV sheet), and the in-depth data extraction of the nine research models (all in one Word/PDF file), including a codebook to clarify the data extraction of core activities and research capacity subsystems, with references to the sources we used (also in a Word/PDF file).
DOI: 10.6084/m9.figshare.22614989
title: Additional file 6 of Transcriptomics and metabolomics reveal changes in the regulatory mechanisms of osteosarcoma under different culture methods in vitro

description: Additional file 6: Table S2. 166 differentially expressed genes were analyzed by Veen.
DOI: 10.6084/m9.figshare.22614992.v1
title: Additional file 7 of Transcriptomics and metabolomics reveal changes in the regulatory mechanisms of osteosarcoma under different culture methods in vitro

description: Additional file 7: Table S3. Pathway information from combined transcriptome with metabolomics analysis.
DOI: 10.15131/shef.data.23624259
title: Dataset for Self-assembled InAs QDs on InGaAsP/InP(100) by modified droplet epitaxy in MOVPE around the telecom C-band for quantum photonic application

description: Dataset for Self-assembled InAs QDs on InGaAsP/InP(100) by modified droplet epitaxy in MOVPE around the telecom C-band for quantum photonic application
DOI: 10.6084/m9.figshare.22615570.v1
title: Additional file 10 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 10: Supplementary Table 1. Total number of reads and read length before and after quality checking and normalization.
DOI: 10.6084/m9.figshare.22616039.v1
title: Additional file 9 of Transcriptional networks orchestrating red and pink testa color in peanut

description: Additional file 9: Table S8. KEGG pathway enrichment of DEGS involved in iso-flavonoid pathway.
DOI: 10.6084/m9.figshare.22616024.v1
title: Additional file 4 of Transcriptional networks orchestrating red and pink testa color in peanut

description: Additional file 4: Table S3. Significantly enriched GO terms between different comparison groups with pink and red testa peanuts.
DOI: 10.6084/m9.figshare.22616314
title: Additional file 10 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 10: Table S7. Pathway enrichment analysis of the LNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616317.v1
title: Additional file 11 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 11: Table S8. Pathway enrichment analysis of the nonLNM-specific DEGs.
DOI: 10.5281/zenodo.10627822
title: Specifying and Monitoring Safe Driving Properties with Scene Graphs
DOI: 10.5281/zenodo.10627823
title: Specifying and Monitoring Safe Driving Properties with Scene Graphs
DOI: 10.6084/m9.figshare.22616314.v1
title: Additional file 10 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 10: Table S7. Pathway enrichment analysis of the LNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616329.v1
title: Additional file 15 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 15: Table S12. GSEA analysis of Reactome pathways enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616018
title: Additional file 2 of Transcriptional networks orchestrating red and pink testa color in peanut

description: Additional file 2: Table S1. Statistics of up-regulated and down-regulated differentially expressed genes (DEGs) in each comparison group.
DOI: 10.6084/m9.figshare.22615967
title: Additional file 2 of Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin

description: Additional file 2: Table S1. Characteristics of metagenomic samples analyzed in this study. Perc_reads_* columns indicate the percentage of reads that map stringently (95% identity) to the dereplicated archaeal/bacterial or phage genome set, respectively. Table S2. Phylogenetic affiliation and relative abundance of ribosomal protein S3 (rps3) 'species groups' used to define community composition. Table S3. Characteristics of bacterial and archaeal genomes analyzed in this study. Table S4. Metabolic HMMs involved in carbon metabolism and manually-assigned score thresholds. Table S5. Presence of metabolic HMMs/pathways across the bacterial/archaeal genome set, and their abundance by sample percentage_relative_coverage refers to the percent of total coverage of all genomes in the quality-filtered, non-redundant set within a sample attributable to a given genome. Table S6. Phylogenetic affiliation, form affiliation, and relative abundance of RuBisCO genes across samples percentage_relative_coverage refers to the percent of all coverage to RuBisCO-containing scaffolds within a sample attributable to a given scaffold. Table S7. Relative abundance (percentage relative coverage of all genomes in the non-redundant set) of CPR bacteria genomes across samples. Table S8. Metrics of enrichment for CPR protein families by lake compartment. Table S9. Characteristics of phage genomes analyzed in this study. Table S10. Relative abundance (percentage relative coverage of all genomes in the non-redundant set) of phage genomes across samples. Table S11. Metrics of enrichment for phage protein families by lake compartment. Table S12. Characteristics of Methylobacter/phage pmoC sequences analyzed in this study.
DOI: 10.6084/m9.figshare.22616030
title: Additional file 6 of Transcriptional networks orchestrating red and pink testa color in peanut

description: Additional file 6: Table S5. DEGS distribution into different KEGG pathways between bulk pink-vs-bulk red testa peanuts.
DOI: 10.6084/m9.figshare.22616078.v1
title: Additional file 3 of Can biomarkers identified from the uterine fluid transcriptome be used to establish a noninvasive endometrial receptivity prediction tool? A proof-of-concept study

description: Additional file 3: Table S2. Functional enrichment of uterine fluid DEGs.
DOI: 10.6084/m9.figshare.22616081.v1
title: Additional file 4 of Can biomarkers identified from the uterine fluid transcriptome be used to establish a noninvasive endometrial receptivity prediction tool? A proof-of-concept study

description: Additional file 4: Table S3. GO enrichment analysis of common and specific DEGs from uterine fluid samples.
DOI: 10.6084/m9.figshare.22615576
title: Additional file 12 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 12: Supplementary Table 3. Alpha diversity indicated by Chao1 and Shannon under microhabitats, locations and varieties variations with related P and F values.
DOI: 10.6084/m9.figshare.14227835.v1
title: Additional file 8 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 8. GO enrichment of PRRSV-HNhx-upregulated-mAb-PN9cx3-reversed genes. The GO terms and KEGG pathways enriched in PRRSV-HNhx-upregulated-mAb-PN9cx3-reversed pig genes are collected in Additional file 9. Sheets 1, 2, and 3 show the enriched biological process (BP)-, cellular component (CC)-, and molecular function (MF)-associated GO terms, respectively. Sheet 4 shows the enriched KEGG pathways.
DOI: 10.6084/m9.figshare.22615573.v1
title: Additional file 11 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 11: Supplementary Table 2. Assigned numbers of bacterial phyla, genera and ASV under different locations, microhabitats and varieties.
DOI: 10.15131/shef.data.24220696
title: Plasmid maps for manuscript '<b>Molecular symmetry breaking in the Frizzled-dependent planar polarity pathway</b>'

description: Plasmid maps for associated publication as plain text GenBank Flat File Format containing DNA sequence information that can be viewed using a text editor (e.g. TextEdit) or common sequence analysis software (e.g. ApE, Geneious, SnapGene, Vector NTI).For details of GenBank Flat File Format see https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html<br>
DOI: 10.6084/m9.figshare.22615582
title: Additional file 14 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 14: Supplementary Table 5. Topological properties of networks for bacterial ASVs under different microhabitats.
DOI: 10.15131/shef.data.23899131
title: Examining Research Systems and Models for Local Government: A Systematic Review - Data extraction files.

description: We undertook a mapping review and time-constrained systematic review (in September-October 2020) to explore potential and existing models of local authority-based research systems. We searched databases, grey literature and references/citations of relevant sources, undertook systematic screening of titles, abstracts and full texts, and synthesised relevant data according to the characteristics of research systems, quality assessing for relevance, rigour and richness. We examined nine models in-depth and from these developed a typology of research systems. The review methods and findings will be published in the journal Evidence and Policy. The data deposited here detail the data extraction from the mapping review stage (in an Excel/CSV sheet), and the in-depth data extraction of the nine research models (all in one Word/PDF file), including a codebook to clarify the data extraction of core activities and research capacity subsystems, with references to the sources we used (also in a Word/PDF file).
DOI: 10.6084/m9.figshare.22615579
title: Additional file 13 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 13: Supplementary Table 4. Taxonomic composition of the bacterial communities under different plant microhabitats, locations at the class or genus level.
DOI: 10.6084/m9.figshare.22615967.v1
title: Additional file 2 of Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin

description: Additional file 2: Table S1. Characteristics of metagenomic samples analyzed in this study. Perc_reads_* columns indicate the percentage of reads that map stringently (95% identity) to the dereplicated archaeal/bacterial or phage genome set, respectively. Table S2. Phylogenetic affiliation and relative abundance of ribosomal protein S3 (rps3) 'species groups' used to define community composition. Table S3. Characteristics of bacterial and archaeal genomes analyzed in this study. Table S4. Metabolic HMMs involved in carbon metabolism and manually-assigned score thresholds. Table S5. Presence of metabolic HMMs/pathways across the bacterial/archaeal genome set, and their abundance by sample percentage_relative_coverage refers to the percent of total coverage of all genomes in the quality-filtered, non-redundant set within a sample attributable to a given genome. Table S6. Phylogenetic affiliation, form affiliation, and relative abundance of RuBisCO genes across samples percentage_relative_coverage refers to the percent of all coverage to RuBisCO-containing scaffolds within a sample attributable to a given scaffold. Table S7. Relative abundance (percentage relative coverage of all genomes in the non-redundant set) of CPR bacteria genomes across samples. Table S8. Metrics of enrichment for CPR protein families by lake compartment. Table S9. Characteristics of phage genomes analyzed in this study. Table S10. Relative abundance (percentage relative coverage of all genomes in the non-redundant set) of phage genomes across samples. Table S11. Metrics of enrichment for phage protein families by lake compartment. Table S12. Characteristics of Methylobacter/phage pmoC sequences analyzed in this study.
DOI: 10.6084/m9.figshare.22616078
title: Additional file 3 of Can biomarkers identified from the uterine fluid transcriptome be used to establish a noninvasive endometrial receptivity prediction tool? A proof-of-concept study

description: Additional file 3: Table S2. Functional enrichment of uterine fluid DEGs.
DOI: 10.6084/m9.figshare.22615876
title: Additional file 4 of Transcriptomics reveals the molecular mechanisms of flesh colour differences in eggplant (Solanum melongena)

description: Additional file 4: Table S3. Primers used in the q-PCR analysis.
DOI: 10.15468/dl.4scmfr
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neolitsea pingbienensis Yen C.Yang & P.H.Huang"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059051-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4e4r9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mussaenda nijensis R.D.Good"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059052-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3gbw5
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neyraudia montana Keng"
 ]
}

 The dataset includes 69 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059053-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wygmw
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myristica cucullata Markgr."
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059054-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hnu72
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontosoria africana F.Ballard"
 ]
}

 The dataset includes 93 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059055-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkpesz
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monophyllaea brevipes S.Moore"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059056-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d33dx9
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mussaenda nivea A.Chev. ex Hutch. & Dalziel"
 ]
}

 The dataset includes 49 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059058-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uedhmc
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neolitsea pinninervis Yen C.Yang & P.H.Huang"
 ]
}

 The dataset includes 62 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059057-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2xqrq
title: Occurrence Download

description: A dataset containing 1325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neyraudia reynaudiana (Kunth) Keng ex Hitchc."
 ]
}

 The dataset includes 1325 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxqfnc
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myristica cumingii Warb."
 ]
}

 The dataset includes 111 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059061-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaxgjd
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontosoria alutacea (Mett.) Perrie & L.D.Sheph."
 ]
}

 The dataset includes 126 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059062-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvhbmg
title: Occurrence Download

description: A dataset containing 740393 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is AD AVH Data"
 ]
}

 The dataset includes 740393 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059039-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfbxuz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monophyllaea burttiana Kiew"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2utvp
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mussaenda oreadum Wernham"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059065-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np6yqn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neolitsea poilanei H.Liu"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059064-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj5cvk
title: Occurrence Download

description: A dataset containing 1147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nichallea soyauxii (Hiern) Bridson"
 ]
}

 The dataset includes 1147 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059066-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vz69xx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myristica cylindrocarpa J.Sinclair"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059067-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6qzx7
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontosoria angustifolia (Bernh.) C.Chr."
 ]
}

 The dataset includes 64 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059069-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqhaae
title: Occurrence Download

description: A dataset containing 38274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bromus catharticus Vahl"
 ]
}

 The dataset includes 38274 records from 905 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059048-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3thy7u
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monophyllaea caulescens B.L.Burtt"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kae5qz
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neolitsea polycarpa H.Liu"
 ]
}

 The dataset includes 118 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059074-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqqe2y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mussaenda ornata S.Moore"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059073-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.