cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tn2ntw
title: Occurrence Download

description: A dataset containing 2032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Cypripedium calceolus L.",
 "Country is Norway",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2032 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017891-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kj5z7d
title: Occurrence Download

description: A dataset containing 309751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.18673 2.66299,-74.83231 2.66299,-74.83231 4.67947,-78.18673 4.67947,-78.18673 2.66299))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 309751 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017819-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apk8qh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-100 -50,-90 -50,-90 -40,-100 -40,-100 -50))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017890-251009101135966/datasets/export for details.
DOI: 10.15468/dl.33g2g6
title: Occurrence Download

description: A dataset containing 13145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((1.67267 46.82537,1.66191 46.83571,1.65363 46.83737,1.64664 46.83572,1.64637 46.83441,1.64314 46.83643,1.64073 46.83529,1.63267 46.83787,1.6346 46.84092,1.64445 46.8406,1.64675 46.84349,1.6551 46.8438,1.65558 46.8536,1.6602 46.86091,1.65066 46.875,1.64367 46.87336,1.64332 46.87654,1.64217 46.87606,1.63926 46.87947,1.63532 46.87646,1.62842 46.88123,1.61746 46.88227,1.61445 46.88056,1.60757 46.88521,1.59632 46.88189,1.58258 46.87529,1.59451 46.86823,1.59609 46.86433,1.58767 46.8553,1.5919 46.85585,1.59471 46.85039,1.59281 46.83351,1.59068 46.82928,1.5935 46.82508,1.59733 46.82297,1.60744 46.8213,1.61018 46.81717,1.59728 46.80371,1.59548 46.80711,1.58835 46.8068,1.57444 46.78739,1.57409 46.78357,1.57707 46.78143,1.57403 46.77847,1.57692 46.77786,1.57797 46.7684,1.57028 46.76503,1.55611 46.75425,1.56826 46.74997,1.57922 46.73671,1.59354 46.74188,1.59952 46.7473,1.61478 46.75092,1.61063 46.74633,1.6145 46.74402,1.61491 46.74197,1.64005 46.74654,1.66527 46.74765,1.67357 46.75508,1.67125 46.75607,1.67089 46.75908,1.68082 46.76663,1.68421 46.7721,1.68425 46.77757,1.66903 46.78403,1.66309 46.79465,1.65195 46.79755,1.63877 46.79862,1.63819 46.80015,1.64793 46.80705,1.66021 46.8047,1.66356 46.81285,1.66738 46.81588,1.67173 46.81665,1.67267 46.82537)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862"
 ]
}

 The dataset includes 13145 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017892-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2da94b
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((27.00438 37.69659,27.0756 37.6999,27.10492 37.78051,26.91222 37.85222,26.75722 37.85442,26.51738 37.74298,26.57602 37.64575,26.81899 37.59044,26.95863 37.65459,27.00438 37.69659))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strigiformes"
 ]
}

 The dataset includes 318 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017893-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9b6nx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-90 -50,-80 -50,-80 -40,-90 -40,-90 -50))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017895-251009101135966/datasets/export for details.
DOI: 10.15468/dl.t6dun5
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetragnatha nitens",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017896-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5k7xg2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((40 -70,50 -70,50 -60,40 -60,40 -70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017897-251009101135966/datasets/export for details.
DOI: 10.15468/dl.cz35sm
title: Occurrence Download

description: A dataset containing 1552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melocactus zehntneri, Melocactus zehntneri, Melocactus zehntneri)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1552 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017898-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tatdy7
title: Occurrence Download

description: A dataset containing 1663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-80 -50,-70 -50,-70 -40,-80 -40,-80 -50))"
 ]
}

 The dataset includes 1663 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017900-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fkht2
title: Occurrence Download

description: A dataset containing 1362 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Gentiana decumbens)"
 ]
}

 The dataset includes 1362 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017899-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx3nks
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((30 -70,40 -70,40 -60,30 -60,30 -70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017901-251009101135966/datasets/export for details.
DOI: 10.15468/dl.7snyd3
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "TaxonKey is Polyphagotarsonemus latus",
 "Year 2000-2025"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017902-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17346376
title: Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes

description: Understanding how non-coding DNA sequences control nearby gene expression is essential for synthetic biology and crop improvement. Current methods for identifying functional regulatory elements rely on expensive, specialized biochemical datasets and are typically limited to a single genotype, overlooking the genetic diversity present at the population level, especially in genes undergoing rapid evolution. Here we developed a computational tool that links natural sequence variation and gene expression variation across the pan-genome and pan-transcriptome to identify causative promoter sequences that directly regulate gene expression. Our tool employs a statistical framework that prioritizes causality over correlation, in contrast to most genome-wide association studies. Applying this tool to maize and soybean, two staple crops, we uncovered both known and novel regulatory elements often found in DNA structural variation that drive gene expression diversity. This approach provides a scalable and cost-effective way to map functional regulatory DNA in crops and efficiently utilizes natural variation from existing pangenomic datasets. It opens new avenues for crop engineering and the study of gene regulation in diverse plant species.
DOI: 10.5281/zenodo.17346377
title: Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes

description: Understanding how non-coding DNA sequences control nearby gene expression is essential for synthetic biology and crop improvement. Current methods for identifying functional regulatory elements rely on expensive, specialized biochemical datasets and are typically limited to a single genotype, overlooking the genetic diversity present at the population level, especially in genes undergoing rapid evolution. Here we developed a computational tool that links natural sequence variation and gene expression variation across the pan-genome and pan-transcriptome to identify causative promoter sequences that directly regulate gene expression. Our tool employs a statistical framework that prioritizes causality over correlation, in contrast to most genome-wide association studies. Applying this tool to maize and soybean, two staple crops, we uncovered both known and novel regulatory elements often found in DNA structural variation that drive gene expression diversity. This approach provides a scalable and cost-effective way to map functional regulatory DNA in crops and efficiently utilizes natural variation from existing pangenomic datasets. It opens new avenues for crop engineering and the study of gene regulation in diverse plant species.
DOI: 10.15468/dl.2vrpfp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((20 -70,30 -70,30 -60,20 -60,20 -70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017903-251009101135966/datasets/export for details.
DOI: 10.15468/dl.336vxk
title: Occurrence Download

description: A dataset containing 13968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Observation, Machine Observation, Material sample, Material citation, Fossil, Living Specimen, Occurrence evidence, Human Observation)",
 "Continent is one of (Africa, Asia, Oceania)",
 "Geometry POLYGON((142.40144 70.64135,-3.73107 53.56609,-15.64405 -0.24085,52.45846 5.11998,98.32342 -49.6797,154.11582 -50.4739,166.62445 6.31129,142.40144 70.64135))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Setaria viridis"
 ]
}

 The dataset includes 13968 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017904-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzmt8d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-60 -50,-50 -50,-50 -40,-60 -40,-60 -50))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017906-251009101135966/datasets/export for details.
DOI: 10.15468/dl.8bzks5
title: Occurrence Download

description: A dataset containing 7209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 -50,-60 -50,-60 -40,-70 -40,-70 -50))"
 ]
}

 The dataset includes 7209 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017905-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgzum6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((10 -70,20 -70,20 -60,10 -60,10 -70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017908-251009101135966/datasets/export for details.
DOI: 10.5517/cc6v0bc
title: CCDC 203742: Experimental Crystal Structure Determination

description: Related Article: Jin-Ho Park, M.Afzaal, M.Helliwell, M.A.Malik, P.O'Brien, J.Raftery|2003|Chem.Mater.|15|4205|doi:10.1021/cm0310420
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6v0cd
title: CCDC 203743: Experimental Crystal Structure Determination

description: Related Article: Jin-Ho Park, M.Afzaal, M.Helliwell, M.A.Malik, P.O'Brien, J.Raftery|2003|Chem.Mater.|15|4205|doi:10.1021/cm0310420
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc79l25
title: CCDC 217746: Experimental Crystal Structure Determination

description: Related Article: Yong-Jin Wu, Huan He, Shuanghua Hu, Yazhong Huang, P.M.Scola, K.Grant-Young, R.L.Bertekap, Dedong Wu, Qi Gao, Yi Li, C.Klakouski, R.S.Westphal|2003|J.Med.Chem.|46|4834|doi:10.1021/jm034142q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc79l36
title: CCDC 217747: Experimental Crystal Structure Determination

description: Related Article: Yong-Jin Wu, Huan He, Shuanghua Hu, Yazhong Huang, P.M.Scola, K.Grant-Young, R.L.Bertekap, Dedong Wu, Qi Gao, Yi Li, C.Klakouski, R.S.Westphal|2003|J.Med.Chem.|46|4834|doi:10.1021/jm034142q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc73h93
title: CCDC 211894: Experimental Crystal Structure Determination

description: Related Article: Gui-Ling Zhao, Min Shi|2005|J.Org.Chem.|70|9975|doi:10.1021/jo051763d
description: Related Article: Gui-Ling Zhao, Jin-Wen Huang, Min Shi|2003|Org.Lett.|5|4737|doi:10.1021/ol0359416
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc73hb4
title: CCDC 211895: Experimental Crystal Structure Determination

description: Related Article: Gui-Ling Zhao, Min Shi|2005|J.Org.Chem.|70|9975|doi:10.1021/jo051763d
description: Related Article: Gui-Ling Zhao, Jin-Wen Huang, Min Shi|2003|Org.Lett.|5|4737|doi:10.1021/ol0359416
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.kb5g6n
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetragnatha vermiformis",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017907-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc70kh8
title: CCDC 209079: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc70kj9
title: CCDC 209080: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc70kkb
title: CCDC 209081: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc70klc
title: CCDC 209082: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc70kmd
title: CCDC 209083: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc73lxt
title: CCDC 212006: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, K.J.Brown, J.R.Gardinier, M.D.Smith|2003|Organometallics|22|4973|doi:10.1021/om0305216
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.