cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.25111505
title: Supplementary information files for Designing intervention prototypes to improve infant and young child nutrition in Peru: A participatory design study protocol

description: (c) the authors, CC-BY 4.0 Supplementary files for article Designing intervention prototypes to improve infant and young child nutrition in Peru: A participatory design study protocol<b>Introduction:</b> Nutrition during the complementary feeding period (6-23 months) is critical to ensure optimal growth and reduce the risk of diet-related disease across the life course. Strategies to reduce multiple forms of malnutrition (stunting, overweight/obesity and anaemia) in infants and young children (IYC) are a key priority in low- and middle-income countries, including Peru. This study aims to co-design and develop prototypes for interventions to address the multiple forms of malnutrition in IYC in urban Peru, using a participatory design approach.<b>Methods and analysis</b>: The study will be based within peri-urban communities in two areas of Peru (Lima and Huánuco city). Following the identification of key nutritional challenges for IYC aged 6-23 months through formative research (Phase 1), we will conduct a series of workshops bringing together healthcare professionals from government health centres and caregivers of IYC aged 6-23 months. Workshops (on idea generation; creating future scenarios; storyboarding, and early implementation and feedback) will take place in parallel in the two study areas. Through these workshops, we will engage with community participants to explore, experiment, co-design, and iteratively validate new design ideas to address the challenges around IYC complementary feeding from Phase 1. Workshop outputs and transcripts will be analysed qualitatively using affinity diagramming and thematic analyses. The intervention prototypes will be evaluated qualitatively and piloted with the participating communities.<b>Ethics and dissemination:</b> Ethical approval for this study was obtained from the Ethical Review Committee of the Instituto de Investigación Nutricional (IIN) Peru (388-2019/CIEIIIN), Loughborough University (C19-87) and confirmed by Cardiff University. Findings of the participatory design process will be disseminated through a deliberative workshop in Lima, Peru with national and regional government stakeholders, as well as participants and researchers involved in the design process. Further dissemination will take place through policy briefs, conferences and academic publications.
DOI: 10.17028/rd.lboro.25111505.v1
title: Supplementary information files for Designing intervention prototypes to improve infant and young child nutrition in Peru: A participatory design study protocol

description: (c) the authors, CC-BY 4.0 Supplementary files for article Designing intervention prototypes to improve infant and young child nutrition in Peru: A participatory design study protocol<b>Introduction:</b> Nutrition during the complementary feeding period (6-23 months) is critical to ensure optimal growth and reduce the risk of diet-related disease across the life course. Strategies to reduce multiple forms of malnutrition (stunting, overweight/obesity and anaemia) in infants and young children (IYC) are a key priority in low- and middle-income countries, including Peru. This study aims to co-design and develop prototypes for interventions to address the multiple forms of malnutrition in IYC in urban Peru, using a participatory design approach.<b>Methods and analysis</b>: The study will be based within peri-urban communities in two areas of Peru (Lima and Huánuco city). Following the identification of key nutritional challenges for IYC aged 6-23 months through formative research (Phase 1), we will conduct a series of workshops bringing together healthcare professionals from government health centres and caregivers of IYC aged 6-23 months. Workshops (on idea generation; creating future scenarios; storyboarding, and early implementation and feedback) will take place in parallel in the two study areas. Through these workshops, we will engage with community participants to explore, experiment, co-design, and iteratively validate new design ideas to address the challenges around IYC complementary feeding from Phase 1. Workshop outputs and transcripts will be analysed qualitatively using affinity diagramming and thematic analyses. The intervention prototypes will be evaluated qualitatively and piloted with the participating communities.<b>Ethics and dissemination:</b> Ethical approval for this study was obtained from the Ethical Review Committee of the Instituto de Investigación Nutricional (IIN) Peru (388-2019/CIEIIIN), Loughborough University (C19-87) and confirmed by Cardiff University. Findings of the participatory design process will be disseminated through a deliberative workshop in Lima, Peru with national and regional government stakeholders, as well as participants and researchers involved in the design process. Further dissemination will take place through policy briefs, conferences and academic publications.
DOI: 10.4119/unibi/2942069
title: Gold standard of Nd1 vs TAIR10 sequence variants

description: High-throughput sequencing technologies have rapidly developed during the past years and became an essential tool in plant sciences. However, the analysis of genomic data remains challenging and relies mostly on the performance of automatic pipelines. Frequently applied pipelines involve the alignment of sequence reads against a reference sequence and the identification of sequence variants. Since most benchmarking studies of bioinformatics tools for this purpose have been conducted on human datasets, there is a lack of benchmarking studies in plant sciences. In this study, we evaluated the performance of 50 different variant calling pipelines, including five read mappers and ten variant callers, on six real plant datasets of the model organism Arabidopsis thaliana. Sets of variants were evaluated based on various parameters including sensitivity and specificity. We found that all investigated tools are suitable for analysis of NGS data in plant research. When looking at different performance metrices, BWA-MEM and Novoalign were the best mappers and GATK returned the best results in the variant calling step.
DOI: 10.4119/unibi/2938178
title: Homozygous SNVs between BoeWGS1.0 and PN40024

description: Belongs to the study 'A Partially Phase-separated Genome Sequence Assembly of the Vitis rootstock ‘Börner’ (_Vitis riparia_ x _Vitis cinerea_) and its Exploitation for Marker Development and Targeted Mapping' which contains additional information about this dataset.
DOI: 10.4119/unibi/2938180
title: Heterozygous SNVs between BoeWGS1.0 and PN40024

description: Belongs to the study 'A Partially Phase-separated Genome Sequence Assembly of the Vitis rootstock ‘Börner’ (_Vitis riparia_ x _Vitis cinerea_) and its Exploitation for Marker Development and Targeted Mapping' which contains additional information about this dataset.
DOI: 10.4119/unibi/2937972
title: Small sequence variants between the Musa acuminata cultivars Dwarf Cavendish and DH Pahang

description: This is an updated version of https://doi.org/10.4119/unibi/2936278. Additional filter steps have been applied to generate this high confidence variant set. Please see https://doi.org/10.1101/691923 for a description of the data set and applied methods.
DOI: 10.5281/zenodo.8380441
title: Degraded Librispeech

description: Degraded Librispeech includes 34110 degraded speech samples obtained from 2650 clean speech sources extracted from Librispeech.

DEGRADATIONS



Background noise



0, 8, 15, 25, 40 dB



Clipping



5, 10, 25, 40, 60 % of waveform samples



Opus



8, 16, 32, 64, 128 kbps



mp3



8, 16, 32, 64, 128 kbps




DETAILS

Loudness is normalized using EBU R 128. 

You can extract labels regarding the degradation type and intensity levels from the filenames.

Degraded Librispeech has been used to develop NOMAD (Non-matching audio distance), a non-matching reference audio quality metric. NOMAD can also be used as a waveform generation loss function to improve speech quality, e.g., speech enhancement.

References:

NOMAD metric (ICASSP 2024): Ragano, Alessandro, Jan Skoglund, and Andrew Hines: NOMAD: Unsupervised Learning of Perceptual Embeddings for Speech Enhancement and Non-matching Reference Audio Quality Assessment [Paper],[Code]

Original Librispeech dataset: Panayotov, Vassil, Guoguo Chen, Daniel Povey, and Sanjeev Khudanpur. "Librispeech: an asr corpus based on public domain audio books." In 2015 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp. 5206-5210. IEEE, 2015.
DOI: 10.5281/zenodo.8380442
title: Degraded Librispeech

description: Degraded Librispeech includes 34110 degraded speech samples obtained from 2650 clean speech sources extracted from Librispeech.

DEGRADATIONS



Background noise



0, 8, 15, 25, 40 dB



Clipping



5, 10, 25, 40, 60 % of waveform samples



Opus



8, 16, 32, 64, 128 kbps



mp3



8, 16, 32, 64, 128 kbps




DETAILS

Loudness is normalized using EBU R 128. 

You can extract labels regarding the degradation type and intensity levels from the filenames.

Degraded Librispeech has been used to develop NOMAD (Non-matching audio distance), a non-matching reference audio quality metric. NOMAD can also be used as a waveform generation loss function to improve speech quality, e.g., speech enhancement.

References:

NOMAD metric (ICASSP 2024): Ragano, Alessandro, Jan Skoglund, and Andrew Hines: NOMAD: Unsupervised Learning of Perceptual Embeddings for Speech Enhancement and Non-matching Reference Audio Quality Assessment [Paper],[Code]

Original Librispeech dataset: Panayotov, Vassil, Guoguo Chen, Daniel Povey, and Sanjeev Khudanpur. "Librispeech: an asr corpus based on public domain audio books." In 2015 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp. 5206-5210. IEEE, 2015.
DOI: 10.6084/m9.figshare.25111637
title: Literature used for trait data

description: This table provides information about the sources (references below) of traits used in the study, along with the quantities of values obtained from each source for each specific trait.
DOI: 10.6084/m9.figshare.25111637.v1
title: Literature used for trait data

description: This table provides information about the sources (references below) of traits used in the study, along with the quantities of values obtained from each source for each specific trait.
DOI: 10.21227/zx5v-q531
title: Evaluation of independent component analysis algorithms for artifact removal in photoplethysmographic signals

description: Abstract— Objective: Pulse oximetry is widely used to measure photoplethysmographic (PPG) signals and blood oxygen saturation but is susceptible to motion artifacts. This is a particular challenge for the growing field of wearable health devices. Independent component analysis (ICA) offers a solution for artifact removal without additional sensors. As there are different approaches for performing an ICA and because artifacts can take many forms, the optimal configuration is unknown. Methods: A prototype of a sensitive reflectance pulse oximeter was developed to measure PPG signals. Six ICA algorithms and their ability to filter motion artifacts were evaluated. Five different artifact types interfered with the PPG signals and were processed in the time and frequency domains for several signal lengths. The evaluation is based on the correlation between the source signal and the restored PPG signal. The most effective configuration was applied on real artifacts. Results: SOBI achieved the most effective signal separation in the time domain, where the specific ICA algorithm or artifact shape had little effect. In contrast, the ICA was less successful in the frequency domain and was compromised by sinusoidal signals. When applied to real motion artifacts, the signal artifacts were considerably reduced but not eliminated entirely. Conclusion: A mismatch between the mathematical assumptions and the composition of the noise signals is indicated. ICA in time domain is a robust approach for filtering varying artifacts.  Significance: This study supports the development of wearables by selecting optimal ICA algorithms and provides an approach for comparing algorithms for artifact reduction.
DOI: 10.5281/zenodo.10592570
title: Named Entity Recognition mit dem Stanford Named Entity Recognizer

description: In der Lerneinheit „Named Entity Recognition mit dem Stanford Named Entity Recognizer“ lassen Sie Figuren, Orte und Organisationen in Goethes „Wahlverwandtschaften" automatisch annotieren. Sie lernen, die Qualität Ihrer automatischen Annotationen zu beurteilen und das dahinter liegende Modell für Figuren zu verbessern. Den Primärtext zu dieser Lerneinheit stellen wir Ihnen hier zum Download bereit. Zu unserer Lerneinheit finden Sie über diesen Link: https://fortext.net/routinen/lerneinheiten/named-entity-recognition-mit-dem-stanford-named-entity-recognizer
DOI: 10.5281/zenodo.10592571
title: Named Entity Recognition mit dem Stanford Named Entity Recognizer

description: In der Lerneinheit „Named Entity Recognition mit dem Stanford Named Entity Recognizer“ lassen Sie Figuren, Orte und Organisationen in Goethes „Wahlverwandtschaften" automatisch annotieren. Sie lernen, die Qualität Ihrer automatischen Annotationen zu beurteilen und das dahinter liegende Modell für Figuren zu verbessern. Den Primärtext zu dieser Lerneinheit stellen wir Ihnen hier zum Download bereit. Zu unserer Lerneinheit finden Sie über diesen Link: https://fortext.net/routinen/lerneinheiten/named-entity-recognition-mit-dem-stanford-named-entity-recognizer
DOI: 10.5517/ccdc.csd.cc204n0v
title: CCDC 1851506: Experimental Crystal Structure Determination

description: Related Article: Yanya|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20k5kb
title: CCDC 1863551: Experimental Crystal Structure Determination

description: Related Article: Wang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgbdk
title: CCDC 2158728: Experimental Crystal Structure Determination

description: Related Article: Nvdan Hu, Xia Wang, Shengxin Sun, Juan Yang, Shengkun Li|2024|Org.Chem.Front.|11|709|doi:10.1039/D3QO01816D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgbfl
title: CCDC 2158729: Experimental Crystal Structure Determination

description: Related Article: Nvdan Hu, Xia Wang, Shengxin Sun, Juan Yang, Shengkun Li|2024|Org.Chem.Front.|11|709|doi:10.1039/D3QO01816D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10592622
title: Korpusanalyse mit CATMA

description: In der Lerneinheit „Korpusanalyse mit CATMA“ analysieren und visualisieren sie beispielhaft ein kleines Korpus aus Romanen des 18. Jahrhunderts mit CATMA. Das vornotierte Korpus zu dieser Lerneinheit stellen wir Ihnen hier zum Download bereit. Zu unserer Lerneinheit finden Sie über diesen Link: https://fortext.net/routinen/lerneinheiten/korpusanalyse-mit-catma
DOI: 10.5281/zenodo.10592623
title: Korpusanalyse mit CATMA

description: In der Lerneinheit „Korpusanalyse mit CATMA“ analysieren und visualisieren sie beispielhaft ein kleines Korpus aus Romanen des 18. Jahrhunderts mit CATMA. Das vornotierte Korpus zu dieser Lerneinheit stellen wir Ihnen hier zum Download bereit. Zu unserer Lerneinheit finden Sie über diesen Link: https://fortext.net/routinen/lerneinheiten/korpusanalyse-mit-catma
DOI: 10.5281/zenodo.10592378
title: Long-term effects of physical training on cardiopulmonary exercise parameters in young patients with congenital heart diseases

description: Ferrero P, Piazza I, Poggioli G, Chessa M, Lorenzelli F. Long-term effects of physical training on cardiopulmonary exercise parameters in young patients with congenital heart diseases. Cardiol Young. 2023 Oct 23:1-7. doi: 10.1017/S1047951123003621. Epub ahead of print. PMID: 37869879.

Abstract



Introduction: Physical activity is recognised as an important intervention in patients with CHD. However, more data on the actual magnitude of physical training impact on functional capacity in this group of patients are still warranted. We aim to assess effort tolerance in a contemporary cohort of patients with congenital heart disease, regularly following a training programme, in comparison with a matched control group.

Methods: Patients with CHD followed at the sports medicine department, who had undergone cardiopulmonary exercise test between 2011 and 2019, were included. Variables recorded were maximum workload, absolute and indexed maximum oxygen consumption, maximum heart rate, absolute and indexed maximum O2 pulse, ventilatory equivalent of CO2 and oxygen consumption/Work. Trend of cardiopulmonary parameters was analysed over time. Maximal workload, maximum oxygen consumption and ventilatory equivalent of CO2 were compared with a control group of patients with a more sedentary lifestyle, matched for diagnosis, gender, age, and body mass index.

Results: Among one hundred and eleven patients, 73 males (66%) were analysed. Median age was 14 (12-17) years. Twenty-nine patients (27%) were practising sports at competitive level. Maximum oxygen consumption and oxygen consumption % of maximum predicted were not significantly different at follow-up as compared with baseline. Follow-up of maximum oxygen consumption was 38.2 ± 9 ml/kg/min versus 38.6 ± 9.2 ml/kg/min (p = NS) and follow-up of %oxygen consumption was 88 ± 20 versus 87 ± 15 (p = NS). Ventilatory equivalent of CO2 significantly improved in the last test as compared with the baseline: 30 ± 4 versus 33 ± 5 (p = 0.002). As compared with the control group, trained patients displayed a significantly higher maximum workload and oxygen consumption, while ventilatory equivalent of CO2 was not significantly different.

Conclusions: In our cohort, patients following a regular training programme displayed a significantly higher functional capacity as compared with not trained control group, irrespective of NYHA class. Objective functional capacity was stable over a median follow-up of 3 years.
DOI: 10.5281/zenodo.10592379
title: Long-term effects of physical training on cardiopulmonary exercise parameters in young patients with congenital heart diseases

description: Ferrero P, Piazza I, Poggioli G, Chessa M, Lorenzelli F. Long-term effects of physical training on cardiopulmonary exercise parameters in young patients with congenital heart diseases. Cardiol Young. 2023 Oct 23:1-7. doi: 10.1017/S1047951123003621. Epub ahead of print. PMID: 37869879.

Abstract



Introduction: Physical activity is recognised as an important intervention in patients with CHD. However, more data on the actual magnitude of physical training impact on functional capacity in this group of patients are still warranted. We aim to assess effort tolerance in a contemporary cohort of patients with congenital heart disease, regularly following a training programme, in comparison with a matched control group.

Methods: Patients with CHD followed at the sports medicine department, who had undergone cardiopulmonary exercise test between 2011 and 2019, were included. Variables recorded were maximum workload, absolute and indexed maximum oxygen consumption, maximum heart rate, absolute and indexed maximum O2 pulse, ventilatory equivalent of CO2 and oxygen consumption/Work. Trend of cardiopulmonary parameters was analysed over time. Maximal workload, maximum oxygen consumption and ventilatory equivalent of CO2 were compared with a control group of patients with a more sedentary lifestyle, matched for diagnosis, gender, age, and body mass index.

Results: Among one hundred and eleven patients, 73 males (66%) were analysed. Median age was 14 (12-17) years. Twenty-nine patients (27%) were practising sports at competitive level. Maximum oxygen consumption and oxygen consumption % of maximum predicted were not significantly different at follow-up as compared with baseline. Follow-up of maximum oxygen consumption was 38.2 ± 9 ml/kg/min versus 38.6 ± 9.2 ml/kg/min (p = NS) and follow-up of %oxygen consumption was 88 ± 20 versus 87 ± 15 (p = NS). Ventilatory equivalent of CO2 significantly improved in the last test as compared with the baseline: 30 ± 4 versus 33 ± 5 (p = 0.002). As compared with the control group, trained patients displayed a significantly higher maximum workload and oxygen consumption, while ventilatory equivalent of CO2 was not significantly different.

Conclusions: In our cohort, patients following a regular training programme displayed a significantly higher functional capacity as compared with not trained control group, irrespective of NYHA class. Objective functional capacity was stable over a median follow-up of 3 years.
DOI: 10.17630/bf27a028-7eb7-472b-8891-c3558bbcae8a
title: Phospholane-phosphite ligands for Rh catalysed enantioselective conjugate addition: unusually reactive catalysts for challenging couplings (dataset)

description: This dataset contains the raw data files for the NMRs. Chemdraws of the molecules are affiliated with the associated NMR files.
DOI: 10.6084/m9.figshare.25111628
title: Supplementary Material

description: The main purpose of the study was to investigate whether gender identity stigma, teachers’ acceptance, and parental support were predictors of mental health among LGBT senior high school students utilizing the predictive research design. A non-probability sampling, specifically the combination of convenience and snowball sampling was employed. A total of four hundred senior high school students participated in the study. Results revealed that the gender identity stigma, teachers’ acceptance, and parental support significantly predict the mental health of the respondents (F (3, 396) = 37.695, p&lt;.001. Specifically, Gender Identity Stigma (β = -.224, t = -4.542, p &lt; .001) negatively predicted Overall Mental Health while both Teachers’ Acceptance (β = .201, t = 4.493, p &lt; .001) and Parental Support (β = .253, t = 5.102, p &lt; .001) positively predicted the Overall Mental Health. The result of the study helped in developing intervention programs that will enhance the existing policy on gender and development in the education sector.