cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/independent-c69-27958
title: Interviews - Meyer, Marshall, 1979-1991

description: Derrick Boston (Irell & Manella), memorandum, 1991 April 22, to Gilbert T. Ray, re Marshall Meyer interview. ❧ Marshall W. Meyer résumé, [1991]. ❧ Marshall W. Meyer (Wharton School of the University of Pennsylvania), Philadelphia, Pennsylvania, USA, letter, 1991 April 22, to Derrick O. Boston (Irell & Manella), 1800 Avenue of the Stars, Los Angeles, California, USA. ❧ LAPD disposition of complaint form. ❧ LAPD personnel complaint form, 1979 April. ❧ LAPD personnel complaint statistical information form, 1986 August (2 copies). ❧ Los Angeles Board of Police Commissioners. "Part IV. Officer involved shootings" in Report... concerning the shooting of Eulia Love and the use of deadly force, [s.d.]. PART OF A SERIES: Latham & Watkins researched a total of 83 civil litigation cases brought against the LAPD pertaining to excessive force and/or improper tactics to ascertain whether the Rodney King incident was in fact the aberration that Chief Daryl Gates described. Included in the series are several materials related to the firm’s investigation and final work product. Specifically, the series contains source materials related to the 83 cases that were studied. These materials include the firm’s own memoranda and notes, statistics on misconduct and police brutality, summaries of the selected cases, recommendations for settlement drafted by the Office of the City Attorney, docket cards, copies of settlement agreements, a master roster of officers named in the civil suits, and excerpts from officers’ personnel files. Also included are summaries of interviews held with police personnel and aggrieved citizens about their perception of problems within the LAPD.
DOI: 10.5281/zenodo.11106922
title: Discrete Flow Cytometry of Depth Profile Samples from the Gradients 5 (2023) Cruise Using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations from discrete flow cytometry data collected during the Gradients 2023 (Gradients 5/TN412) oceanographic research cruise in the equatorial Pacific Ocean. The data consists of cell abundance, cell size (equivalent spherical diameter), carbon quota, and carbon biomass for heterotrophic bacteria, picophytoplankton populations, namely the cyanobacteria Prochlorococcus and Synechococcus, and small eukaryotic phytoplankton (<5 μm ESD). Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
DOI: 10.5281/zenodo.11106923
title: Discrete Flow Cytometry of Depth Profile Samples from the Gradients 5 (2023) Cruise Using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations from discrete flow cytometry data collected during the Gradients 2023 (Gradients 5/TN412) oceanographic research cruise in the equatorial Pacific Ocean. The data consists of cell abundance, cell size (equivalent spherical diameter), carbon quota, and carbon biomass for heterotrophic bacteria, picophytoplankton populations, namely the cyanobacteria Prochlorococcus and Synechococcus, and small eukaryotic phytoplankton (<5 μm ESD). Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
DOI: 10.15468/dl.vcbjyd
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliangelus micraster Gould, 1872"
 ]
}

 The dataset includes 395 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003164-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pu4pp
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlamydomonas reinhardtii P.A.Dang."
 ]
}

 The dataset includes 123 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033449-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmr0it
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protozoa",
 "DecimalLatitude is greater than 38.5482718175967",
 "DecimalLatitude is less than 39.3348923317677",
 "DecimalLongitude is greater than -114.70238386965",
 "DecimalLongitude is less than -113.786578154844"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007198-180824113759888/datasets/export for details.
DOI: 10.25549/independent-c69-26945
title: Interviews - Murphy, Patrick, 1988-1991

description: David C. Marcus, memorandum, 1991 May 13, to Christopher Commission files, re Patrick Murphy (2 copies). ❧ Irell & Manella (Louise LaMothe and Derrick Boston), memorandum, 1991 May 3, to Independent Commission, re Testimony of Patrick Murphy. ❧ Patrick Murphy witness file, 1991 May 8 (2 copies). ❧ Patrick V. Murphy. "Police brutality is not the norm" New York Times (1991 April 5) (2 copies). ❧ Jefferson Morley. "Patrick Murphy: One of nation's foremost cops brokenhearted by the brutality" Los Angeles Times (1991 April 2): p. M3 etc. (2 copies). ❧ U.S. Mayor vol. 57, no. 19 (1990 October 29) (2 copies). ❧ Patrick V. Murphy. "The role of mayors in police improvement", [s.d.] (2 copies). ❧ Perspectives on Policing, no. 4 (1988 November). ❧ Perspectives on Policing, no. 13 (1990 January) (2 copies). ❧ Mae Churchill (Urban Policy Research Institute), 530 Paseo Miramar, Pacific Palisades, California, USA, letter, 1991 April 30, to Nancy McClelland (Gibson, Dunn & Crutcher), 2029 Century Park East, Los Angeles, California, USA. ❧ David Burnham (Transactional Records Access Clearinghouse (TRAC), Syracuse University), letter, 1991 April 23, to Warren Christopher (Independent Commission on the Los Angeles Police Department), 400 South Hope Street, Los Angeles, California, USA. PART OF A SERIES: Latham & Watkins researched a total of 83 civil litigation cases brought against the LAPD pertaining to excessive force and/or improper tactics to ascertain whether the Rodney King incident was in fact the aberration that Chief Daryl Gates described. Included in the series are several materials related to the firm’s investigation and final work product. Specifically, the series contains source materials related to the 83 cases that were studied. These materials include the firm’s own memoranda and notes, statistics on misconduct and police brutality, summaries of the selected cases, recommendations for settlement drafted by the Office of the City Attorney, docket cards, copies of settlement agreements, a master roster of officers named in the civil suits, and excerpts from officers’ personnel files. Also included are summaries of interviews held with police personnel and aggrieved citizens about their perception of problems within the LAPD.
DOI: 10.15468/dl.zu55ut
title: Occurrence Download

description: A dataset containing 42304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrtus communis L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42304 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001868-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26656906
title: Additional file 10 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 10.  Table S4. Differentially methylated loci in the three SDHB patients (37.5%) who developed distant metastatic events after primary tumour formation compared to the other SDHB patients were examined. Location of promoters of genes in EAPGL versus PCC are included.
DOI: 10.6084/m9.figshare.26656906.v1
title: Additional file 10 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 10.  Table S4. Differentially methylated loci in the three SDHB patients (37.5%) who developed distant metastatic events after primary tumour formation compared to the other SDHB patients were examined. Location of promoters of genes in EAPGL versus PCC are included.
DOI: 10.6084/m9.figshare.26656909
title: Additional file 11 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 11. Table S5. Differentially methylated loci in the three SDHB patients who developed distant metastatic events after primary tumour formation compared to the other SDHB samples.
DOI: 10.6084/m9.figshare.26656909.v1
title: Additional file 11 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 11. Table S5. Differentially methylated loci in the three SDHB patients who developed distant metastatic events after primary tumour formation compared to the other SDHB samples.
DOI: 10.6084/m9.figshare.26656912
title: Additional file 12 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 12.  Table S6. GSEA enrichment analyses comparing non-metastatic versus metastatic tumours.
DOI: 10.6084/m9.figshare.26656912.v1
title: Additional file 12 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 12.  Table S6. GSEA enrichment analyses comparing non-metastatic versus metastatic tumours.
DOI: 10.6084/m9.figshare.26656915
title: Additional file 13 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 13.  Table S7. Over-representation analysis (ORA) on upregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms. Perturbed biological processes included “negative regulation of execution phase of apoptosis” (GO:1900118) with enrichment ratio (ER) 27.43 and FDR &lt; 0.001, “extracellular regulation of signal transduction” (GO:1900115, ER=16.625, FDR &lt; 0.001) and “regulation of transcription involved in cell fate commitment” (GO:0060850, ER=16.136, FDR=0.01).
DOI: 10.6084/m9.figshare.26656915.v1
title: Additional file 13 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 13.  Table S7. Over-representation analysis (ORA) on upregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms. Perturbed biological processes included “negative regulation of execution phase of apoptosis” (GO:1900118) with enrichment ratio (ER) 27.43 and FDR &lt; 0.001, “extracellular regulation of signal transduction” (GO:1900115, ER=16.625, FDR &lt; 0.001) and “regulation of transcription involved in cell fate commitment” (GO:0060850, ER=16.136, FDR=0.01).
DOI: 10.6084/m9.figshare.26656918
title: Additional file 14 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 14.  Table S8. Reactome pathway analysis on upregulated genes in Cluster 1A compared to non-Cluster 1A tumours. From the Reactome Knowledgebase, the pathway related to RTK-protein phosphatases (R-HSA-388844) had ER=17.947 and FDR &lt; 0.01.
DOI: 10.6084/m9.figshare.26656918.v1
title: Additional file 14 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 14.  Table S8. Reactome pathway analysis on upregulated genes in Cluster 1A compared to non-Cluster 1A tumours. From the Reactome Knowledgebase, the pathway related to RTK-protein phosphatases (R-HSA-388844) had ER=17.947 and FDR &lt; 0.01.
DOI: 10.6084/m9.figshare.26656921
title: Additional file 15 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 15.  Table S9. Over-representation analysis (ORA) on downregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms. Affected biological processes included inner dynein arm assembly (GO:0036159, ER=12.171, FDR=0.02), positive regulation of protein processing (GO:0010954, ER=7.86, FDR=0.03) and positive regulation of lipid biosynthetic process (GO:0046889, ER=4.4839, FDR=0.03). Some of the cellular components involved were collagen-containing extracellular matrix (GO:0062023, ER=3.4064, FDR &lt; 0.001) and the neuronal cell body (GO:0043025, ER=3.1354, FDR=9.32 x 10-7).
DOI: 10.6084/m9.figshare.26656921.v1
title: Additional file 15 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 15.  Table S9. Over-representation analysis (ORA) on downregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms. Affected biological processes included inner dynein arm assembly (GO:0036159, ER=12.171, FDR=0.02), positive regulation of protein processing (GO:0010954, ER=7.86, FDR=0.03) and positive regulation of lipid biosynthetic process (GO:0046889, ER=4.4839, FDR=0.03). Some of the cellular components involved were collagen-containing extracellular matrix (GO:0062023, ER=3.4064, FDR &lt; 0.001) and the neuronal cell body (GO:0043025, ER=3.1354, FDR=9.32 x 10-7).
DOI: 10.6084/m9.figshare.26656924
title: Additional file 16 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 16.  Table S10. Reactome pathway analysis revealed multiple pathways were perturbed including those related to epigenetic regulation: “passive transport by aquaporins” (R-HSA-432047, ER=13.712, FDR &lt; 0.01), “RNA polymerase I promoter opening” (R-HSA-73728, ER=5.65, FDR &lt; 0.001), “DNA methylation” (R-HSA-5334118, ER=5.4849, FDR=0.004) and “packaging of telomere ends” (R-HSA-171306, ER=5.4849, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26656924.v1
title: Additional file 16 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 16.  Table S10. Reactome pathway analysis revealed multiple pathways were perturbed including those related to epigenetic regulation: “passive transport by aquaporins” (R-HSA-432047, ER=13.712, FDR &lt; 0.01), “RNA polymerase I promoter opening” (R-HSA-73728, ER=5.65, FDR &lt; 0.001), “DNA methylation” (R-HSA-5334118, ER=5.4849, FDR=0.004) and “packaging of telomere ends” (R-HSA-171306, ER=5.4849, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26656927
title: Additional file 17 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 17.  Table S11. Reactome pathway analysis on downregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms.
DOI: 10.6084/m9.figshare.26656927.v1
title: Additional file 17 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 17.  Table S11. Reactome pathway analysis on downregulated genes in Cluster 1A compared to non-Cluster 1A tumours for Biological Process and Cellular Component gene ontology terms.
DOI: 10.6084/m9.figshare.26656930
title: Additional file 18 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 18.  Table S12. Some gene ontology sets from the Biological Process analysis include “positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity” (GO:2000373, ER=71.214, FDR=0.02), “regulation of exit from mitosis” (GO:0007096, ER=35.607, FDR &lt; 0.001) and “regulation of mitotic sister chromatid separation” (GO:0010965, ER=26.705, FDR &lt; 0.001).
DOI: 10.6084/m9.figshare.26656930.v1
title: Additional file 18 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 18.  Table S12. Some gene ontology sets from the Biological Process analysis include “positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity” (GO:2000373, ER=71.214, FDR=0.02), “regulation of exit from mitosis” (GO:0007096, ER=35.607, FDR &lt; 0.001) and “regulation of mitotic sister chromatid separation” (GO:0010965, ER=26.705, FDR &lt; 0.001).
DOI: 10.6084/m9.figshare.26656933
title: Additional file 19 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 19.  Table S13. In Molecular Function gene sets (Figure 4D) “ATP-dependent microtubule motor activity, plus-end-directed” (GO:0008574, ER=37.164, FDR &lt; 0.001), “microtubule motor activity” (GO:0003777, ER=26.194, FDR=1 x 10-7) and “extracellular matrix structural constituent conferring tensile strength” (GO:0030020, ER=26.115, FDR &lt; 0.01) were the most enriched.
DOI: 10.6084/m9.figshare.26656933.v1
title: Additional file 19 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 19.  Table S13. In Molecular Function gene sets (Figure 4D) “ATP-dependent microtubule motor activity, plus-end-directed” (GO:0008574, ER=37.164, FDR &lt; 0.001), “microtubule motor activity” (GO:0003777, ER=26.194, FDR=1 x 10-7) and “extracellular matrix structural constituent conferring tensile strength” (GO:0030020, ER=26.115, FDR &lt; 0.01) were the most enriched.
DOI: 10.6084/m9.figshare.26656936
title: Additional file 20 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 20.  Table S14. The Reactome pathways “G2/M DNA replication checkpoint” (R-HSA-69478, ER=72.779, FDR=0.015), “condensation of prometaphase chromosomes” (R-HSA-2514853, ER=66.163, FDR &lt; 0.001), “kinesins” (R-HSA-983189, ER 25.537, FDR=8.35 x 10-8) and “amplification of signal from the kinetochores” (R-HSA-141424, ER=18.953, FDR=1.38 x 10-8) were enriched.
DOI: 10.6084/m9.figshare.26656936.v1
title: Additional file 20 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 20.  Table S14. The Reactome pathways “G2/M DNA replication checkpoint” (R-HSA-69478, ER=72.779, FDR=0.015), “condensation of prometaphase chromosomes” (R-HSA-2514853, ER=66.163, FDR &lt; 0.001), “kinesins” (R-HSA-983189, ER 25.537, FDR=8.35 x 10-8) and “amplification of signal from the kinetochores” (R-HSA-141424, ER=18.953, FDR=1.38 x 10-8) were enriched.
DOI: 10.6084/m9.figshare.26656939
title: Additional file 21 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 21.  Table S15. ORA on the Pharmacogenomics Knowledgebase (PharmGKB) was interrogated using the upregulated genes in the metastatic tumours as input. The results pointed to the drug group taxanes (PA150481189, ER=21.722, FDR=3.75 x 10-10) docetaxel (PA449383, ER=19.795, FDR &lt; 0.001), epirubicin (PA449476, ER=14.405, FDR &lt; 0.01) and paclitaxel (PA450761, ER=13.986, FDR &lt; 0.001).
DOI: 10.6084/m9.figshare.26656939.v1
title: Additional file 21 of A comprehensive characterisation of phaeochromocytoma and paraganglioma tumours through histone protein profiling, DNA methylation and transcriptomic analysis genome wide

description: Additional file 21.  Table S15. ORA on the Pharmacogenomics Knowledgebase (PharmGKB) was interrogated using the upregulated genes in the metastatic tumours as input. The results pointed to the drug group taxanes (PA150481189, ER=21.722, FDR=3.75 x 10-10) docetaxel (PA449383, ER=19.795, FDR &lt; 0.001), epirubicin (PA449476, ER=14.405, FDR &lt; 0.01) and paclitaxel (PA450761, ER=13.986, FDR &lt; 0.001).
DOI: 10.6084/m9.figshare.24883836
title: Additional file 4 of Competing endogenous RNA network analysis of Turner syndrome patient-specific iPSC-derived cardiomyocytes reveals dysregulation of autosomal heart development genes by altered dosages of X-inactivation escaping non-coding RNAs

description: Additional file 4. Table S1. Differentially expressed mRNA.
DOI: 10.6084/m9.figshare.24883836.v1
title: Additional file 4 of Competing endogenous RNA network analysis of Turner syndrome patient-specific iPSC-derived cardiomyocytes reveals dysregulation of autosomal heart development genes by altered dosages of X-inactivation escaping non-coding RNAs

description: Additional file 4. Table S1. Differentially expressed mRNA.
DOI: 10.6084/m9.figshare.26657053
title: Additional file 5 of Competing endogenous RNA network analysis of Turner syndrome patient-specific iPSC-derived cardiomyocytes reveals dysregulation of autosomal heart development genes by altered dosages of X-inactivation escaping non-coding RNAs

description: Additional file 5. Table S2. Differentially expressed lncRNA.
DOI: 10.15468/dl.6r7gxq
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Amelanchier amabilis Wiegand"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2023",
 "DecimalLatitude is greater than or equal to 24.1271113347408",
 "DecimalLatitude is less than or equal to 56.572699215132005",
 "DecimalLongitude is greater than or equal to -89.31544323258166",
 "DecimalLongitude is less than or equal to -51.73636965516586",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005083-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.