cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e5nk94
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogostemon glabratus Chermsir. ex Press"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089462-230530130749713/datasets/export for details.
DOI: 10.15468/dl.9cndai
title: Occurrence Download

description: A dataset containing 1351 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedyosmum bonplandianum Kunth"
 ]
}

 The dataset includes 1351 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003046-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apecux
title: Occurrence Download

description: A dataset containing 1035 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euchirella rostromagna Wolfenden, 1905"
 ]
}

 The dataset includes 1035 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118934-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec59bz
title: Occurrence Download

description: A dataset containing 1494 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia thonningii (Schumach. & Thonn.) Baker"
 ]
}

 The dataset includes 1494 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072868-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zawg2u
title: Occurrence Download

description: A dataset containing 7270 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is France",
 "Country is Spain",
 "Country is Italy",
 "Country is Andorra",
 "Country is Portugal",
 "Country is Switzerland",
 "Country is Belgium"
 ]
 },
 "TaxonKey is Autographa gamma (Linnaeus, 1758)"
 ]
}

 The dataset includes 7270 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003046-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52mmbn
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tonna zonata (Green, 1830)"
 ]
}

 The dataset includes 134 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100219-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uszuft
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroramphosus scolopax (Linnaeus, 1758)",
 "Year 1899-1950"
 ]
}

 The dataset includes 123 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125793-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ijzvm
title: Occurrence Download

description: A dataset containing 6898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-160 8,-50 8,-50 80,-160 80,-160 8))",
 "HasCoordinate is true",
 "TaxonKey is Trifolium repens L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6898 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003046-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.18865998.v2
title: IFI27 is a potential therapeutic target for HIV infection

description: Therapeutic studies against human immunodeficiency virus type 1 (HIV-1) infection have become one of the important works in global public health. Differential expression analysis was performed between HIV-positive (HIV+) and HIV-negative (HIV-) patients for GPL6947 and GPL10558 of GSE29429. Coexpression analysis of common genes with the same direction of differential expression identified modules. Module genes were subjected to enrichment analysis, Short Time-series Expression Miner (STEM) analysis, and PPI network analysis. The top 100 most connected genes in the PPI network were screened to construct the LASSO model, and AUC values were calculated to identify the key genes. Methylation modification of key genes were identified by the chAMP package. Differences in immune cell infiltration between HIV + and HIV- patients, as well as between antiretroviral therapy (ART) and HIV + patients, were calculated using ssGSEA. We obtained 3610 common genes, clustered into nine coexpression modules. Module genes were significantly enriched in interferon signalling, helper T-cell immunity, and HIF-1-signalling pathways. We screened out module genes with gradual changes in expression with increasing time from HIV enrolment using STEM software. We identified 12 significant genes through LASSO regression analysis, especially proteasome 20S subunit beta 8 (PSMB8) and interferon alpha inducible protein 27 (IFI27). The expression of PSMB8 and IFI27 were then detected by quantitative real-time PCR. Interestingly, IFI27 was also a persistently dysregulated gene identified by STEM. In addition, 10 of the key genes were identified to be modified by methylation. The significantly infiltrated immune cells in HIV + patients were restored after ART, and IFI27 was significantly associated with immune cells. The above results provided potential target genes for early diagnosis and treatment of HIV + patients. IFI27 may be associated with the progression of HIV infection and may be a powerful target for immunotherapy.
DOI: 10.6084/m9.figshare.18865998
title: IFI27 is a potential therapeutic target for HIV infection

description: Therapeutic studies against human immunodeficiency virus type 1 (HIV-1) infection have become one of the important works in global public health. Differential expression analysis was performed between HIV-positive (HIV+) and HIV-negative (HIV-) patients for GPL6947 and GPL10558 of GSE29429. Coexpression analysis of common genes with the same direction of differential expression identified modules. Module genes were subjected to enrichment analysis, Short Time-series Expression Miner (STEM) analysis, and PPI network analysis. The top 100 most connected genes in the PPI network were screened to construct the LASSO model, and AUC values were calculated to identify the key genes. Methylation modification of key genes were identified by the chAMP package. Differences in immune cell infiltration between HIV + and HIV- patients, as well as between antiretroviral therapy (ART) and HIV + patients, were calculated using ssGSEA. We obtained 3610 common genes, clustered into nine coexpression modules. Module genes were significantly enriched in interferon signalling, helper T-cell immunity, and HIF-1-signalling pathways. We screened out module genes with gradual changes in expression with increasing time from HIV enrolment using STEM software. We identified 12 significant genes through LASSO regression analysis, especially proteasome 20S subunit beta 8 (PSMB8) and interferon alpha inducible protein 27 (IFI27). The expression of PSMB8 and IFI27 were then detected by quantitative real-time PCR. Interestingly, IFI27 was also a persistently dysregulated gene identified by STEM. In addition, 10 of the key genes were identified to be modified by methylation. The significantly infiltrated immune cells in HIV + patients were restored after ART, and IFI27 was significantly associated with immune cells. The above results provided potential target genes for early diagnosis and treatment of HIV + patients. IFI27 may be associated with the progression of HIV infection and may be a powerful target for immunotherapy.
DOI: 10.6084/m9.figshare.19773607
title: Association between smoking and glycemic control in men with newly diagnosed type 2 diabetes: a retrospective matched cohort study

description: Longitudinal data on the association between smoking and glycemic control in men with newly diagnosed type 2 diabetes (T2DM) is scarce. Therefore, this study aimed to examine the extent of the association between smoking and glycemic control in this population. The retrospective cohort study identified 3044 eligible men with T2DM in a medical centre in Taiwan between 2002 and 2017. Smokers (<i>n</i> = 757) were matched 1:1 with non-smokers using propensity score-matching. All of them were followed for one year. Glycated haemoglobin (HbA1c) levels were measured at 0, 3, 6, 9, and 12 months after enrolment. Generalised estimating equations were used to assess smoking status-by-time interaction to determine the difference in HbA1c reduction between the two cohorts. All analyses were performed in 2020. The estimated maximal difference in HbA1c reduction between smokers and non-smokers was 0.33% (95% CI, 0.05–0.62%) at 3 months of follow-up. For patients with body mass index (BMI) &lt;25 kg/m<sup>2</sup>, the difference in HbA1c reduction between smokers and non-smokers was much larger (0.74%, 95% CI, 0.35–1.14%) than in those with a higher BMI. Our findings show that smoking was independently associated with unfavourable glycemic control among men with newly diagnosed T2DM, and such a detrimental association could be stronger in men with a lower BMI.
DOI: 10.6084/m9.figshare.19773607.v1
title: Association between smoking and glycemic control in men with newly diagnosed type 2 diabetes: a retrospective matched cohort study

description: Longitudinal data on the association between smoking and glycemic control in men with newly diagnosed type 2 diabetes (T2DM) is scarce. Therefore, this study aimed to examine the extent of the association between smoking and glycemic control in this population. The retrospective cohort study identified 3044 eligible men with T2DM in a medical centre in Taiwan between 2002 and 2017. Smokers (<i>n</i> = 757) were matched 1:1 with non-smokers using propensity score-matching. All of them were followed for one year. Glycated haemoglobin (HbA1c) levels were measured at 0, 3, 6, 9, and 12 months after enrolment. Generalised estimating equations were used to assess smoking status-by-time interaction to determine the difference in HbA1c reduction between the two cohorts. All analyses were performed in 2020. The estimated maximal difference in HbA1c reduction between smokers and non-smokers was 0.33% (95% CI, 0.05–0.62%) at 3 months of follow-up. For patients with body mass index (BMI) &lt;25 kg/m<sup>2</sup>, the difference in HbA1c reduction between smokers and non-smokers was much larger (0.74%, 95% CI, 0.35–1.14%) than in those with a higher BMI. Our findings show that smoking was independently associated with unfavourable glycemic control among men with newly diagnosed T2DM, and such a detrimental association could be stronger in men with a lower BMI.
DOI: 10.6084/m9.figshare.19457841
title: Factors associated with poor compliance amongst hospitalized, predominantly adolescent pediatric Crohn’s disease patients

description: Compliance with medical treatment is vital for the control of inflammatory bowel disease (IBD) and prevention of disease complications and is an issue in paediatric patients. We explored patient-related factors associated with non-compliance in a large database of predominantly adolescent, hospitalized paediatric Crohn’s disease (CD) patients. We analyzed data from the Kid’s Inpatient Database (KID) the largest publicly available all-payer paediatric inpatient care database in the United States. All available paediatric CD patients non-electively admitted in 2016 were included. CD patients were extracted using the standard international classification of diseases (ICD) 10 codes. Data suggesting non-compliance, comorbidities and surgical procedures related to CD were similarly extracted. 2439 paediatric CD patients with non-elective admission were included in the analysis. 2 280 patients (94%) were adolescents. Of the total cohort, 113 patients (4.6%) had a diagnosis of non-compliance. In univariate analyses, smoking (15.9 vs. 5.5%, <i>p</i> &lt; .001), cannabis use (5.3 vs 1.5%, <i>p</i> = .009), and a diagnosis of depression (19.5 vs. 9%, <i>p</i> = .001) or schizoaffective disorder (5.3 vs 0.3%, <i>p</i> &lt; .001) were associated with non-compliance. Multivariable analysis revealed that schizoaffective disorder (odds ratio (OR) 11.6, 95% CI 3.6–37.2), depression (OR 1.9, 95%CI 1.2-3.2) and smoking (OR 2.2, 95%CI 1.25–4) were independently associated with non-compliance. In this study, mental health disorders and smoking were independently associated with non-compliance to medication in predominantly adolescent, hospitalized paediatric CD patients. A multidisciplinary approach involving paediatric gastroenterologists, psychiatrists and addiction specialists are needed to treat the underlying causes and improve adherence in these patients.KEY MESSAGESMental health disorders and smoking are independent risk factors for medication non-compliance amongst adolescent, paediatric CD patients.A multidisciplinary approach is required to treat underlying causes and improve adherence in paediatric IBD patients. Mental health disorders and smoking are independent risk factors for medication non-compliance amongst adolescent, paediatric CD patients. A multidisciplinary approach is required to treat underlying causes and improve adherence in paediatric IBD patients.
DOI: 10.6084/m9.figshare.19457841.v1
title: Factors associated with poor compliance amongst hospitalized, predominantly adolescent pediatric Crohn’s disease patients

description: Compliance with medical treatment is vital for the control of inflammatory bowel disease (IBD) and prevention of disease complications and is an issue in paediatric patients. We explored patient-related factors associated with non-compliance in a large database of predominantly adolescent, hospitalized paediatric Crohn’s disease (CD) patients. We analyzed data from the Kid’s Inpatient Database (KID) the largest publicly available all-payer paediatric inpatient care database in the United States. All available paediatric CD patients non-electively admitted in 2016 were included. CD patients were extracted using the standard international classification of diseases (ICD) 10 codes. Data suggesting non-compliance, comorbidities and surgical procedures related to CD were similarly extracted. 2439 paediatric CD patients with non-elective admission were included in the analysis. 2 280 patients (94%) were adolescents. Of the total cohort, 113 patients (4.6%) had a diagnosis of non-compliance. In univariate analyses, smoking (15.9 vs. 5.5%, <i>p</i> &lt; .001), cannabis use (5.3 vs 1.5%, <i>p</i> = .009), and a diagnosis of depression (19.5 vs. 9%, <i>p</i> = .001) or schizoaffective disorder (5.3 vs 0.3%, <i>p</i> &lt; .001) were associated with non-compliance. Multivariable analysis revealed that schizoaffective disorder (odds ratio (OR) 11.6, 95% CI 3.6–37.2), depression (OR 1.9, 95%CI 1.2-3.2) and smoking (OR 2.2, 95%CI 1.25–4) were independently associated with non-compliance. In this study, mental health disorders and smoking were independently associated with non-compliance to medication in predominantly adolescent, hospitalized paediatric CD patients. A multidisciplinary approach involving paediatric gastroenterologists, psychiatrists and addiction specialists are needed to treat the underlying causes and improve adherence in these patients.KEY MESSAGESMental health disorders and smoking are independent risk factors for medication non-compliance amongst adolescent, paediatric CD patients.A multidisciplinary approach is required to treat underlying causes and improve adherence in paediatric IBD patients. Mental health disorders and smoking are independent risk factors for medication non-compliance amongst adolescent, paediatric CD patients. A multidisciplinary approach is required to treat underlying causes and improve adherence in paediatric IBD patients.
DOI: 10.7910/dvn/wyjwpk
title: Replication Data for: The Trump Treatment: A natural experiment in German public perception of the US

description: How does a historically turbulent week in transatlantic relations affect public perceptions of the USA and of foreign and defense policy in Germany? We address these questions using data from two surveys conducted in September 2023 and February/March 2025 (N1 ≈ 8,900, N2 ≈ 8,600). The latter period, spanning four days before to two days after the highly contentious Oval Office meeting between US President Donald Trump, Vice President J.D. Vance and Ukrainian President Volodymyr Zelenskyy, provides a natural experimental setting to assess shifts in German public opinion. Our findings indicate that this event reinforces longer-term trends: supporters of center parties (Christian Democrats, Social Democrats and Greens) already saw a negative change of attitudes toward the USA and were confirmed in this direction by the meeting. Yet, also on the political fringes, historically established certainties are shifting. Supporters of the populist radical-right AfD shed their strong anti-Americanism in the wake of Trump's election victory and were not swayed in their views by the meeting. At the same time, supporters of the traditionally anti-militarist Left Party positioned themselves more positively toward a joint European army and the participation of German soldiers in a peacekeeping mission in Ukraine post meeting.
DOI: 10.5281/zenodo.15708244
title: X-ray surface and Bragg Diffraction data for the ultrafast melting of orbital order in La0.5Sr1.5MnO4

description: The following contains raw and processed data from an X-ray surface scattering experiment performed at SwissFEL using the Bernina instrument. 

Details of the experiment can be found in the publication listed below.
DOI: 10.5281/zenodo.15708245
title: X-ray surface and Bragg Diffraction data for the ultrafast melting of orbital order in La0.5Sr1.5MnO4

description: The following contains raw and processed data from an X-ray surface scattering experiment performed at SwissFEL using the Bernina instrument. 

Details of the experiment can be found in the publication listed below.
DOI: 10.13145/bacdive154387.20230509.8.1
title: Dietzia cinnamea

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154388.20230509.8.1
title: Gordonia sputi

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154389.20230509.8.1
title: Lactococcus garvieae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154390.20230509.8.1
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154391.20230509.8.1
title: Streptococcus anginosus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154392.20230509.8.1
title: Staphylococcus caprae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154393.20230509.8.1
title: Streptococcus pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154394.20230509.8.1
title: Pasteurella canis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154395.20230509.8.1
title: Nocardia cyriacigeorgica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154400.20230509.8.1
title: Corynebacterium xerosis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154401.20230509.8.1
title: Corynebacterium xerosis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154402.20230509.8.1
title: Burkholderia multivorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154403.20230509.8.1
title: Bradyrhizobium elkanii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154404.20230509.8.1
title: Staphylococcus epidermidis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154405.20230509.8.1
title: Corynebacterium afermentans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154406.20230509.8.1
title: Actinomyces israelii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154407.20230509.8.1
title: Campylobacter jejuni

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154408.20230509.8.1
title: Yersinia enterocolitica subsp. palearctica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154409.20230509.8.1
title: Yersinia massiliensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154410.20230509.8.1
title: Raoultella terrigena

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154412.20230509.8.1
title: Streptococcus sanguinis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154413.20230509.8.1
title: Achromobacter ruhlandii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154414.20230509.8.1
title: Lautropia mirabilis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154415.20230509.8.1
title: Moraxella atlantae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.