cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13297913
title: DN-CSCs

description: Raw data for all graphs used in the manuscript.
DOI: 10.6084/m9.figshare.14075372.v4
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript
DOI: 10.5281/zenodo.4556330
title: Database FEP

description: An open-source experimental database on flush end-plate connections.
DOI: 10.6073/pasta/1d71014d631433cca1241ced90f18b64
title: Weather station data from three locations at Lake Sunapee (NH, USA), July 2019 – December 2020

description: Davis weather stations, owned and operated by the Lake Sunapee Protective Association (LSPA), were installed at three locations near the shoreline of Lake Sunapee (NH, USA) in July 2019. These stations collect data at 30-minute intervals for a number of weather and meteorological variables continuously throughout the year. In addition to the measured variables, a number of derived variables which are also recorded at the same time intervals. Data are manually downloaded from Davis’s WeatherLink website every quarter, then collated and QAQC’d to remove any obvious outliers or recording errors in the R programming language.
DOI: 10.17909/t9-knnn-b972
title: NGC 5253

description: Hubble data used for late time analysis of supernova 1972E in https://arxiv.org/abs/2102.07796.
DOI: 10.6084/m9.figshare.14081327
title: Data-adults.sav

description: Data-Adult group and Children group
DOI: 10.6084/m9.figshare.14081327.v2
title: Data-adults.sav

description: Data-Adult group and Children group
DOI: 10.6084/m9.figshare.14081327.v1
title: Data-adults.sav

description: Data-Adult group
DOI: 10.17632/yjf2fvd7yx.1
title: Data for: Natural attenuation of large anthropogenic nitrate loads in a subtropical stream revealed by δ15N and δ18O

description: Our data describe a time series and a spatial analysis of a subtropical creek
DOI: 10.17632/6fjns3h8f5.1
title: Data for: Contributions to the kinetics of the iodide-iodate test reaction for micromixing characterization in a non-toxic phosphate buffer

description: Concentration data
DOI: 10.6084/m9.figshare.13635353
title: 2-TDDFT-E-f.zip

description: 2001 geometries of acridophosphine derivative (compound 2 in T. A. Schaub, S. M. Brülls, P. O. Dral, F. Hampel, H. Maid, M. Kivala, <i>Chem. Eur. J. </i><b>2017</b>, <i>23</i>, 6988–6992, DOI: 10.1002/chem.201701412) in xyz format and reference TDDFT (ωB97XD/def2-SVP) values for 30 excitation energies and oscillator strengths at each geometry. Geometries were obtained from a Wigner distribution. The first geometry is an equilibrium geometry.<br><br>The raw data generated by Pavlo O. DralThe data was converted into the final format by Bao-Xin Xue
DOI: 10.6084/m9.figshare.14082788.v1
title: Data-children

description: Data-children group
DOI: 10.6084/m9.figshare.13568270.v1
title: Larsen, S., Comte, L., Filipe, A.F., Fortin, M-J., Jacquet, C., Ryser, R., Tedesco, P., Brose, U., Eros, T., Giam, X., Irving, K., Ruhi, A., Sharma, S., and J.D. Olden. 2021. The geography of metapopulation synchrony in dendritic river networks. Ecology Letters.

description: Data for: Larsen, S., Comte, L., Filipe, A.F., Fortin, M-J., Jacquet, C., Ryser, R., Tedesco, P., Brose, U., Eros, T., Giam, X., Irving, K., Ruhi, A., Sharma, S., and J.D. Olden. 2021. The geography of metapopulation synchrony in dendritic river networks. <i>Ecology Letters 00:0000-0000. </i><br>Contact information: Stefano Larsen (larsen.stefano@googlemail.com) and Julian Olden (olden@uw.edu)<br>ELE_synchrogram.datamat=Data matrix including temporal synchrony values between each population pair within each study basin, along with the three distance types separating the populations. Predictions from the exponential decay models are also included.<br>ELE_basin_level_params=Data matrix with basin-level information including area, mean Euclidean/watercourse distance between populations, and basin-level synchrogram parameters (i.e. decay and 1-km synchrony).<br>Last updated: 01/13/2021<br>
DOI: 10.6084/m9.figshare.13568270
title: Larsen, S., Comte, L., Filipe, A.F., Fortin, M-J., Jacquet, C., Ryser, R., Tedesco, P., Brose, U., Eros, T., Giam, X., Irving, K., Ruhi, A., Sharma, S., and J.D. Olden. 2021. The geography of metapopulation synchrony in dendritic river networks. Ecology Letters.

description: Data for: Larsen, S., Comte, L., Filipe, A.F., Fortin, M-J., Jacquet, C., Ryser, R., Tedesco, P., Brose, U., Eros, T., Giam, X., Irving, K., Ruhi, A., Sharma, S., and J.D. Olden. 2021. The geography of metapopulation synchrony in dendritic river networks. <i>Ecology Letters 00:0000-0000. </i><br>Contact information: Stefano Larsen (larsen.stefano@googlemail.com) and Julian Olden (olden@uw.edu)<br>ELE_synchrogram.datamat=Data matrix including temporal synchrony values between each population pair within each study basin, along with the three distance types separating the populations. Predictions from the exponential decay models are also included.<br>ELE_basin_level_params=Data matrix with basin-level information including area, mean Euclidean/watercourse distance between populations, and basin-level synchrogram parameters (i.e. decay and 1-km synchrony).<br>Last updated: 01/13/2021<br>
DOI: 10.5439/1046182
title: ARM AOS: Cloud Condensation Nuclei Counter (Dual Column) - aosccn200

description: ARM Instrument: Cloud Condensation Nuclei Particle Counter
DOI: 10.5281/zenodo.4556355
title: A new model for formation of lacustrine primary dolomite by subaqueous hydrothermal venting

description: Almost 230 years after it was first described, formation of the mineral dolomite remains enigmatic. Dolomitic rocks are abundant throughout the geological record, and most are thought to form by replacement of limestone. Recent work has identified substantial volumes of high-temperature primary dolomite deposited in Cretaceous lacustrine rift basins in northern China. Here we provide the missing conceptual understanding of the fundamental processes that may have formed such dolomitic sediments by combining an analysis of the physics and chemistry of sub-lacustrine hydrothermal systems with new data on the mineralogy and geochemistry of the dolomites. This novel mechanism accounts for systematic changes in the characteristics of the dolomite sequence that intimately link with the evolution of convection within the fault damage zone and venting of brine-rich mixtures to the lake basin, and provides a new model to be tested against dolomitic sediments in high-enthalpy settings such as rifting basins. The dataset is used to decrible geochemical characteristics of dolomites in the paper.
DOI: 10.5281/zenodo.3900064
title: Kuesioner Penilaian Ahli

description: Kuesioner penilaian ahli media dan ahli materi terhadap pengembangan rancangan aplikasi perhitungan Indikator Pelayanan Rawat Inap Berbasis Komputer
DOI: 10.5281/zenodo.4556354
title: A new model for formation of lacustrine primary dolomite by subaqueous hydrothermal venting

description: Almost 230 years after it was first described, formation of the mineral dolomite remains enigmatic. Dolomitic rocks are abundant throughout the geological record, and most are thought to form by replacement of limestone. Recent work has identified substantial volumes of high-temperature primary dolomite deposited in Cretaceous lacustrine rift basins in northern China. Here we provide the missing conceptual understanding of the fundamental processes that may have formed such dolomitic sediments by combining an analysis of the physics and chemistry of sub-lacustrine hydrothermal systems with new data on the mineralogy and geochemistry of the dolomites. This novel mechanism accounts for systematic changes in the characteristics of the dolomite sequence that intimately link with the evolution of convection within the fault damage zone and venting of brine-rich mixtures to the lake basin, and provides a new model to be tested against dolomitic sediments in high-enthalpy settings such as rifting basins. The dataset is used to decrible geochemical characteristics of dolomites in the paper.
DOI: 10.5281/zenodo.3900063
title: Kuesioner Penilaian Ahli

description: Kuesioner penilaian ahli media dan ahli materi terhadap pengembangan rancangan aplikasi perhitungan Indikator Pelayanan Rawat Inap Berbasis Komputer
DOI: 10.5281/zenodo.4556383
title: A Semi-Analytical Solution for Countercurrent Spontaneous Imbibition in Water-Wet Fractured Reservoirs

description: A datased containing the results obtained with the 2D numerical simulations and the semi-analytical model.
DOI: 10.5281/zenodo.4042113
title: A Semi-Analytical Solution for Countercurrent Spontaneous Imbibition in Water-Wet Fractured Reservoirs

description: A datased containing the results obtained with the 2D numerical simulations and the semi-analytical model.
DOI: 10.18141/1418810
title: MITAS - 2009 Expedition US Beaufort Shelf Slope of Alaska - Lithostratigraphy

description: The volume of methane released through the Arctic Ocean to the atmosphere and its potential role in the global climate cycle has increasingly become the focus of studies seeking to understand the source and origin of this methane. In 2009, an international, multi-disciplinary science party aboard the U.S. Coast Guard icebreaker Polar Sea successfully completed a trans-U.S. Beaufort shelf expedition aimed at understanding the sources and volumes of methane across this region. Following more than a year of preliminary cruise planning and a thorough site evaluation, the Methane in the Arctic Shelf/Slope (MITAS) expedition departed from the waters off the coast of Barrow, Alaska in September 2009. The expedition, led by researchers with the U.S. Naval Research Laboratory (NRL), the Royal Netherlands Institute for Sea Research (NIOZ), and the U.S. Department of Energy's National Energy Technology Laboratory (NETL), was organized with an international shipboard science team consisting of 33 scientists with the breadth of expertise necessary to meet the expedition goals. NETL researchers led the expeditions initial core processing and lithostratigraphic evaluations, which are the focus of this report. A full expedition summary is available at in First Trans-Shelf-Slope Climate Study in the U.S. Beaufort Sea Completed by Coffin et al.,( 2010).
DOI: 10.25345/c5nz2t
title: MassIVE MSV000086938 - GNPS_MetanolAgua_1-5_Pyropia-1
title: Pyropia acanthophora dataset ImpactII QToF MeOH extract
DOI: 10.25345/c5j506
title: MassIVE MSV000086939 - GNPS_MetanolAgua_1-5_Pyropia-1
title: Pyropia acanthophora_ impact II (Bruker Daltonics micrOTOF series)
DOI: 10.6084/m9.figshare.14091126.v1
title: Additional file 1 of Transient accumulation of subretinal fluid after half-fluence photodynamic therapy in neovascular age-related macular degeneration

description: Additional file 1. Changes in central foveal thickness and best-corrected visual acuity. Dataset that supports the findings of this study.
DOI: 10.6084/m9.figshare.14091126
title: Additional file 1 of Transient accumulation of subretinal fluid after half-fluence photodynamic therapy in neovascular age-related macular degeneration

description: Additional file 1. Changes in central foveal thickness and best-corrected visual acuity. Dataset that supports the findings of this study.
DOI: 10.6084/m9.figshare.14091153.v1
title: Additional file 6 of Insights into wing dimorphism in worldwide agricultural pest and host-alternating aphid Aphis gossypii

description: Additional file 6: Table S2. Lists of significantly enriched KEGG pathways from the shared DEGs in winged morphs.
DOI: 10.6084/m9.figshare.14091153
title: Additional file 6 of Insights into wing dimorphism in worldwide agricultural pest and host-alternating aphid Aphis gossypii

description: Additional file 6: Table S2. Lists of significantly enriched KEGG pathways from the shared DEGs in winged morphs.
DOI: 10.6084/m9.figshare.14091190
title: Additional file 1 of An ambient-temperature storage and stabilization device performs comparably to flash-frozen collection for stool metabolomics in infants

description: Additional file 1: Supplemental Table 1. Metabolites only detected in one collection method.
DOI: 10.6084/m9.figshare.14091196.v1
title: Additional file 2 of An ambient-temperature storage and stabilization device performs comparably to flash-frozen collection for stool metabolomics in infants

description: Additional file 2: Supplemental Table 2. Correlation of metabolite abundance between in Frozen and OMNImet.GUT tube fecal samples for individual metabolites.
DOI: 10.6084/m9.figshare.14091190.v1
title: Additional file 1 of An ambient-temperature storage and stabilization device performs comparably to flash-frozen collection for stool metabolomics in infants

description: Additional file 1: Supplemental Table 1. Metabolites only detected in one collection method.
DOI: 10.6084/m9.figshare.14091196
title: Additional file 2 of An ambient-temperature storage and stabilization device performs comparably to flash-frozen collection for stool metabolomics in infants

description: Additional file 2: Supplemental Table 2. Correlation of metabolite abundance between in Frozen and OMNImet.GUT tube fecal samples for individual metabolites.
DOI: 10.6084/m9.figshare.13719142.v1
title: Additional file 11 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 11. Master regulator molecules of genes upregulated in GE1-hepatocellular carcinoma (HCC). Significantly up regulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and P ≤ 0.01 were identified (Additional file 4) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719142
title: Additional file 11 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 11. Master regulator molecules of genes upregulated in GE1-hepatocellular carcinoma (HCC). Significantly up regulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and P ≤ 0.01 were identified (Additional file 4) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719145
title: Additional file 12 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 12. Master regulator molecules of genes upregulated in GE2-hepatocellular carcinoma (HCC). Significantly up regulated genes in GE2-HCC (n=13) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and false discovery rate (FDR) ≤ 0.05 were identified (Additional file 5) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719148
title: Additional file 13 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 13. Master regulator molecules of genes downregulated in GE1-hepatocellular carcinoma (HCC). Significantly down regulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≤ -2 and P ≤ 0.01 were identified (Additional file 4) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719148.v1
title: Additional file 13 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 13. Master regulator molecules of genes downregulated in GE1-hepatocellular carcinoma (HCC). Significantly down regulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≤ -2 and P ≤ 0.01 were identified (Additional file 4) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719154
title: Additional file 15 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 15. Lists of overrepresented transcription factor binding sites (TFBSs) in genes upregulated in GE1-hepatocellular carcinoma (HCC). Significantly upregulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and P ≤ 0.01 (Additional file 4) were used as an input gene list for bioinformatics analyses. Promoter sequences of the co-regulated in tumours genes (“Yes” set) and the control gene set (“No” set) were searched for potential transcription factor binding sites (TFBSs) using the MATCHTM tool and TRANSFAC® library of positional weight matrices. The frequencies of TFBSs in the “Yes” gene set and “No” gene set were identified, and the ratio of “Yes” versus “No” was calculated. Yes/No ratio &gt; 1 indicates overrepresentation of TFBSs in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes.
DOI: 10.6084/m9.figshare.13719151
title: Additional file 14 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 14. Master regulator molecules of genes downregulated in GE2-hepatocellular carcinoma (HCC). Significantly down regulated genes in GE2-HCC (n=13) versus NT (n=17) samples with mean fold change (FC) ≤ -2 and false discovery rate (FDR) ≤ 0.05 were identified (Additional file 5) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719151.v1
title: Additional file 14 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 14. Master regulator molecules of genes downregulated in GE2-hepatocellular carcinoma (HCC). Significantly down regulated genes in GE2-HCC (n=13) versus NT (n=17) samples with mean fold change (FC) ≤ -2 and false discovery rate (FDR) ≤ 0.05 were identified (Additional file 5) and used as an input gene list for bioinformatics analyses. Master regulator molecules in the signal transduction pathways, at a distance of up to 10 steps upstream of the dysregulated genes, were identified using the curated database of pathways and protein interactions TRANSPATH®.
DOI: 10.6084/m9.figshare.13719154.v1
title: Additional file 15 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 15. Lists of overrepresented transcription factor binding sites (TFBSs) in genes upregulated in GE1-hepatocellular carcinoma (HCC). Significantly upregulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and P ≤ 0.01 (Additional file 4) were used as an input gene list for bioinformatics analyses. Promoter sequences of the co-regulated in tumours genes (“Yes” set) and the control gene set (“No” set) were searched for potential transcription factor binding sites (TFBSs) using the MATCHTM tool and TRANSFAC® library of positional weight matrices. The frequencies of TFBSs in the “Yes” gene set and “No” gene set were identified, and the ratio of “Yes” versus “No” was calculated. Yes/No ratio &gt; 1 indicates overrepresentation of TFBSs in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes.
DOI: 10.6084/m9.figshare.13719157
title: Additional file 16 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 16. Lists of overrepresented transcription factor binding sites (TFBSs) in genes upregulated in GE2-hepatocellular carcinoma (HCC). Significantly up regulated genes in GE2-HCC (n=13) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and false discovery rate (FDR) ≤ 0.05 (Additional file 5) were used as an input gene list for bioinformatics analyses. Promoter sequences of the co-regulated in tumours genes (“Yes” set) and the control gene set (“No” set) were searched for potential transcription factor binding sites (TFBSs) using the MATCHTM tool and TRANSFAC® library of positional weight matrices. The frequencies of TFBSs in the “Yes” gene set and “No” gene set were identified, and the ratio of “Yes” versus “No” was calculated. Yes/No ratio &gt; 1 indicates overrepresentation of TFBSs in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes.
DOI: 10.6084/m9.figshare.13719157.v1
title: Additional file 16 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 16. Lists of overrepresented transcription factor binding sites (TFBSs) in genes upregulated in GE2-hepatocellular carcinoma (HCC). Significantly up regulated genes in GE2-HCC (n=13) versus NT (n=17) samples with mean fold change (FC) ≥ 2 and false discovery rate (FDR) ≤ 0.05 (Additional file 5) were used as an input gene list for bioinformatics analyses. Promoter sequences of the co-regulated in tumours genes (“Yes” set) and the control gene set (“No” set) were searched for potential transcription factor binding sites (TFBSs) using the MATCHTM tool and TRANSFAC® library of positional weight matrices. The frequencies of TFBSs in the “Yes” gene set and “No” gene set were identified, and the ratio of “Yes” versus “No” was calculated. Yes/No ratio &gt; 1 indicates overrepresentation of TFBSs in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes.
DOI: 10.6084/m9.figshare.13719160
title: Additional file 17 of Gene networks and transcriptional regulators associated with liver cancer development and progression

description: Additional file 17. Lists of overrepresented transcription factor binding sites (TFBSs) in genes downregulated in GE1-hepatocellular carcinoma (HCC). Significantly down regulated genes in GE1-HCC (n=10) versus NT (n=17) samples with mean fold change (FC) ≤ -2 and P ≤ 0.01 (Additional file 4) were used as an input gene list for bioinformatics analyses. Promoter sequences of the co-regulated in tumours genes (“Yes” set) and the control gene set (“No” set) were searched for potential transcription factor binding sites (TFBSs) using the MATCHTM tool and TRANSFAC® library of positional weight matrices. The frequencies of TFBSs in the “Yes” gene set and “No” gene set were identified, and the ratio of “Yes” versus “No” was calculated. Yes/No ratio &gt; 1 indicates overrepresentation of TFBSs in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes.