cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kb814nh
title: Data from: Accelerated redevelopment of vocal skills is preceded by lasting reorganization of the song motor circuitry

description: Complex motor skills take considerable time and practice to learn. Without
 continued practice the level of skill performance quickly degrades, posing
 a problem for the timely utilization of skilled motor behaviors. Here we
 quantified the recurring development of vocal motor skills and the
 accompanying changes in synaptic connectivity in the brain of a songbird,
 while manipulating skill performance by consecutively administrating and
 withdrawing testosterone. We demonstrate that a songbird with prior
 singing experience can significantly accelerate the re-acquisition of
 vocal performance. We further demonstrate that an increase in vocal
 performance is accompanied by a pronounced synaptic pruning in the
 forebrain vocal motor area HVC, a reduction that is not reversed when
 birds stop singing. These results provide evidence that lasting synaptic
 changes in the motor circuitry are associated with the savings of motor
 skills, enabling a rapid recovery of motor performance under environmental
 time constraints.
description: SQL
 B010SQL data file of
 developmental song features of individual B010. Feature extraction was
 conducted with Sound Analysis Pro 2011.SQL
 B041SQL data file of
 developmental song features of individual B041. Feature extraction was
 conducted with Sound Analysis Pro 2011.SQL
 B002SQL data file of
 developmental song features of individual B002. Feature extraction was
 conducted with Sound Analysis Pro 2011.SQL
 B022SQL data file of
 developmental song features of individual B022. Feature extraction was
 conducted with Sound Analysis Pro 2011.SQL
 B047SQL data file of
 developmental song features of individual B047. Feature extraction was
 conducted with Sound Analysis Pro 2011.SQL
 B068SQL data file of
 developmental song features of individual B068. Feature extraction was
 conducted with Sound Analysis Pro 2011.
DOI: 10.5061/dryad.4d786
title: Data from: A modern ampelography: a genetic basis for leaf shape and venation patterning in Vitis vinifera

description: Terroir, the unique interaction between genotype, environment, and
 culture, is highly refined in domesticated grape, Vitis vinifera. Towards
 cultivating terroir, the science of ampelography tried to distinguish
 thousands of grape cultivars, without the aid of genetics. This led to
 sophisticated phenotypic analyses of natural variation in grape leaves,
 which within a palmate-lobed framework exhibit diverse patterns of blade
 outgrowth, hirsuteness, and venation patterning. Here, we provide a
 morphometric analysis of &gt;1,200 V. vinifera accessions. Elliptical
 Fourier Descriptors provide a global analysis of leaf outlines and lobe
 positioning, while a Procrustes analysis quantitatively describes venation
 patterning. Correlation with previous ampelography suggests an important
 genetic component, which we confirm with estimates of heritability. We
 further use RNA-Seq of mutant varieties and perform a Genome-Wide
 Association Study (GWAS) to explore the genetic basis of leaf shape.
 Meta-analysis reveals a relationship between leaf morphology and
 hirsuteness, traits known to correlate with climate in the fossil record
 and extant species. Together, our data demonstrate a genetic basis for the
 intricate diversity present in grape leaves. We discuss the possibility of
 using grape leaves as a breeding target to preserve terroir in the face of
 anticipated climate change, a major problem facing viticulture.
description: RNA-Seq FASTQ data for
 Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices,
 replicate #1 ("WT_1")WT_1.filtered.fq.gzRNA-Seq FASTQ data for Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices, replicate #2 ("WT_2")WT_2.filtered.fq.gzRNA-Seq FASTQ data for Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices, replicate #3 ("WT_3")WT_3.filtered.fq.gzRNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #1 ("mutant_1")mutant_1.filtered.fq.gzRNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #2 ("mutant_2")mutant_2.filtered.fq.gzRNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #3 ("mutant_3")mutant_3.filtered.fq.gz
DOI: 10.5061/dryad.4qb53
title: Data from: Pros and cons of external swabbing of amphibians for genetic analyses

description: Non-invasive DNA sampling is an important tool in amphibian conservation.
 Buccal swabs are nowadays replacing the wounding toe-clipping method. Skin
 and cloaca swabbing are even less invasive and easier to handle than
 buccal swabbing, but could result in contaminations of genetic material.
 Therefore, we test if external skin and cloaca swabs are as reliable as
 buccal swabs for genetic analysis of amphibians. We analysed eight
 microsatellite loci for the common frog (Rana temporaria, Linnaeus 1758)
 and compared genotyping results for buccal, skin and cloaca swabs
 regarding allelic dropouts and false alleles. Furthermore, we compared two
 DNA extraction methods regarding efficiency and cost. DNA quality and
 quantity (amplification success, genotyping error rate, in nanogram per
 microlitre) were comparable among DNA sources and extraction methods.
 However, skin and cloaca samples exhibited high degrees of contamination
 with foreign individuals, which was due to sample collection during mating
 season. Here, we established a simple low budget procedure to receive DNA
 of amphibians avoiding stressful buccal swabbing or harmful toe clipping.
 However, the possibility of contaminations of external swabs has to be
 considered.
description: List of genotypes of
 buccal, skin and cloaca swabsThis file is a
 supplement for the publication “Pros and cons of external swabbing of
 amphibians for genetic analysis” by Müller A., Lenhardt P. and Theissinger
 K (2013). The file shows the dataset and includes three tables. Two tables
 show all repetitions of each sample, each table for one multiplex set (Set
 1: 66, 151, 130; Set 2: 82, 99, 160, 145, 129). The third table shows
 genotypes of all samples and all loci without repetitions. The tables are
 compiled as follows: The first column contains the individual numbers and
 the second column contains the kind of swab sample (B: Buccal swab, S:
 Skin swab, C: Cloaca swab). From column three the alleles per loci are
 listed. Real genotypes are printed in bold, false alleles in red and
 allelic drop outs in blue.Datatable_Müller et al.
 2013_Pros and cons of external swabbing of amphibians for genetic
 analyses.xlsx
DOI: 10.5061/dryad.q835s
title: Data from: Promiscuity resolves constraints on social mate choice imposed by population viscosity

description: Population viscosity can have major consequences for adaptive evolution,
 in particular for phenotypes involved in social interactions. For example,
 population viscosity increases the probability of mating with close kin,
 resulting in selection for mechanisms that circumvent the potential
 negative consequences of inbreeding. Female promiscuity is often suggested
 to be one such mechanism. However, whether avoidance of genetically
 similar partners is a major selective force shaping patterns of
 promiscuity remains poorly supported by empirical data. Here, we show (i)
 that fine-scale genetic structure constrains social mate choice in a
 pair-bonding lizard, resulting in individuals pairing with genetically
 similar individuals, (ii) that these constraints are circumvented by
 multiple mating with less related individuals and (iii) that this results
 in increased heterozygosity of offspring. Despite this, we did not detect
 any significant effects of heterozygosity on offspring or adult fitness or
 a strong relationship between pair relatedness and female multiple mating.
 We discuss these results within the context of incorporating the genetic
 context dependence of mating strategies into a holistic understanding of
 mating system evolution.
description: Whileetal_MolEcol_DryadGenotype information for all adults and offspring for each season. Data on adult and offspring traits.
DOI: 10.5061/dryad.36951
title: Data from: Despite catch-up, prolonged growth has detrimental fitness consequences in a long-lived vertebrate

description: Individuals experiencing poor growth early in life may later make up their
 size deficit. Compensatory growth or growth prolongation may lead to such
 catch-up, involving different life-history tradeoffs under natural
 conditions. Frequent recaptures and detailed monitoring of animals
 surviving to asymptotic size are required to compare growth tactics and
 their fitness consequences. No study to date has obtained such detailed
 information for wild animals. We used repeated mass measurements (mean
 11.6/animal) spanning the lifetime of 104 bighorn ewes (Ovis canadensis)
 to quantify growth tactics and identify the determinants and life-history
 costs of these tactics. Growth prolongation, not compensatory growth, led
 to partial catch-up: mass difference at age 7 was reduced to 4%, for two
 groups that differed by nearly 20% as yearlings. Ewes that had been light
 as yearlings prolonged their growth regardless of density or age of
 primiparity. Growth prolongation did not affect fecundity or longevity.
 Ewes that experienced poor early growth prolonged growth at the expense of
 reproductive fitness, weaning a smaller proportion of their lambs. By
 tracking multi-year growth patterns and comparing events at different
 life-history stages, we quantified a trade-off between growth and
 reproduction that would be overlooked if only the adult phenotype was
 considered. Compensatory growth in long-lived animals appears unlikely
 when early growth restrictions are mostly density-dependent.
description: BighornEweGrowthFitnessFirst sheet: mass of ewes when caught as lambs, with ID of mother, population density, age of primiparity. Second sheet: for each year of life of each ewe, mass and reproductive successThird sheet: codes for reproductive successs
DOI: 10.5061/dryad.3kn78
title: Data from: Dispersal influences genetic and acoustic spatial structure for both males and females in a tropical songbird

description: 1. Animals exhibit diverse dispersal strategies, including sex-biased
 dispersal, a phenomenon common in vertebrates. Dispersal influences the
 genetic structure of populations as well as geographic variation in
 phenotypic traits. Patterns of spatial genetic structure and geographic
 variation may vary between the sexes whenever males and females exhibit
 different dispersal behaviours. 2. Here, we examine dispersal, spatial
 genetic structure, and spatial acoustic structure in Rufous-and-white
 Wrens, a year-round resident tropical bird. Both sexes sing in this
 species, allowing us to compare acoustic variation between males and
 females, and examine the relationship between dispersal and song sharing
 for both sexes. 3. Using a long-term dataset collected over an 11-year
 period, we used banding data and molecular genetic analyses to quantify
 natal and breeding dispersal distance in Rufous-and-white Wrens. We
 quantified song-sharing and examined whether sharing varied with dispersal
 distance, for both males and females. 4. Observational data and molecular
 genetic analyses indicate that dispersal is female-biased. Females
 dispersed farther from natal territories than males, and more often
 between breeding territories than males. Furthermore, females showed no
 significant spatial genetic structure, consistent with expectations,
 whereas males showed significant spatial genetic structure. Overall, natal
 dispersal appears to have more influence than breeding dispersal on
 spatial genetic structure and spatial acoustic structure, given that the
 majority of breeding dispersal events resulted in individuals moving only
 short distances. 5. Song sharing between pairs of same-sex animals
 decreases with the distance between their territories for both males and
 females, although males exhibited significantly greater song-sharing than
 females. 6. Lastly, we measured the relationship between natal dispersal
 distance and song sharing. We found that sons shared fewer songs with
 their fathers the farther they dispersed from their natal territories, but
 that song sharing between daughters and mothers was not significantly
 correlated with natal dispersal distance. 7. Our results reveal cultural
 differences between the sexes, suggesting a relationship between culture
 and sex-biased dispersal
description: Dryad msat
 file
DOI: 10.5061/dryad.g3m1g92
title: Data from: Fuel moisture content enhances nonadditive effects of plant mixtures on flammability and fire behavior

description: Fire behavior of plant mixtures includes a complex set of processes for
 which the interactive contributions of its drivers, such as plant identity
 and moisture, have not yet been unraveled fully. Plant flammability
 parameters of species mixtures can show substantial deviations of fire
 properties from those expected based on the component species when burnt
 alone; that is, there are nonadditive mixture effects. Here, we
 investigated how fuel moisture content affects nonadditive effects in fire
 behavior. We hypothesized that both the magnitude and variance of
 nonadditivity in flammability parameters are greater in moist than in dry
 fuel beds. We conducted a series of experimental burns in monocultures and
 2‐species mixtures with two ericaceous dwarf shrubs and two bryophyte
 species from temperate fire‐prone heathlands. For a set of fire behavior
 parameters, we found that magnitude and variability of nonadditive effects
 are, on average, respectively 5.8 and 1.8 times larger in moist (30% MC)
 species mixtures compared to dry (10% MC) mixed fuel beds. In general, the
 moist mixtures caused negative nonadditive effects, but due to the larger
 variability these mixtures occasionally caused large positive nonadditive
 effects, while this did not occur in dry mixtures. Thus, at moister
 conditions, mixtures occasionally pass the moisture threshold for ignition
 and fire spread, which the monospecific fuel beds are unable to pass. We
 also show that the magnitude of nonadditivity is highly species dependent.
 Thus, contrary to common belief, the strong nonadditive effects in
 mixtures can cause higher fire occurrence at moister conditions. This new
 integration of surface fuel moisture and species interactions will help us
 to better understand fire behavior in the complexity of natural
 ecosystems.
description: Blauw et al 2015 Non
 additivity and moistureThe columns show what
 data it contains. This is the data calculated based on the raw data.
 Please contact lukeblauw@hotmail.com for raw data or
 details.
DOI: 10.5061/dryad.9r295
title: Data from: Model misspecification confounds the estimation of rates and exaggerates their time dependency

description: While welcoming the comment of Ho et al. (2015), we find little that
 undermines the strength of our criticism, and it would appear they have
 misunderstood our central argument. Here we respond with the purpose of
 reiterating that we are (i) generally critical of much of the evidence
 presented in support of the time-dependent molecular rate (TDMR)
 hypothesis and (ii) specifically critical of estimates of μ derived from
 tip-dated sequences that exaggerate the importance of purifying selection
 as an explanation for TDMR over extended timescales. In response to
 assertions put forward by Ho et al. (2015), we use panmictic coalescent
 simulations of temporal data to explore a fundamental assumption for
 tip-dated tree shape and associated mutation rate estimates, and the
 appropriateness and utility of the date randomization test. The results
 reveal problems for the joint estimation of tree topology, effective
 population size and μ with tip-dated sequences using beast. Given the
 simulations, beast consistently obtains incorrect topological tree
 structures that are consistent with the substantial overestimation of μ
 and underestimation of effective population size. Data generated from
 lower effective population sizes were less likely to fail the date
 randomization test yet still resulted in substantially upwardly biased
 estimates of rates, bringing previous estimates of μ from temporally
 sampled DNA sequences into question. We find that our general criticisms
 of both the hypothesis of time-dependent molecular evolution and Bayesian
 methods to estimate μ from temporally sampled DNA sequences are further
 reinforced.
description: Mutation rates
 simulation pipelineThe simulation pipeline
 generates coalescent-based genealogies that comprise a mixed of current
 and ancestral samples. These genealogies are then converted into
 phylograms with branch lengths in units of substitutions per site onto
 which mutations are simulated. The resultant sequences serve then to
 estimate substitution rates in BEAST using the simulated date-calibrated
 data.Compressed files
 simulation pipelineCompressed files for the
 simulation pipeline generates coalescent-based genealogies that comprise a
 mixed of current and ancestral samples. These genealogies are then
 converted into phylograms with branch lengths in units of substitutions
 per site onto which mutations are simulated. The resultant sequences serve
 then to estimate substitution rates in BEAST using the simulated
 date-calibrated data.tdmra_simulations.tar.gz
DOI: 10.5061/dryad.vm0m6
title: Data from: Effects of time pressure and time passage on face-matching accuracy

description: This study investigated the impact of time pressure on matching accuracy
 with face pairs that combined photographs from student ID cards with
 high-quality person portraits, and under conditions that provided
 infrequent identity mismatches. Time pressure was administered via two
 onscreen displays that observers could use to adjust the amount of time
 that was allocated to a given trial while completing a block of trials
 within a required timeframe. Under these conditions, observers matched
 faces under time pressure that varied from 10 to 2 s (Experiment 1) and 8
 to 2 s (Experiment 2). An effect of time pressure was found in each
 experiment, whereby performance deteriorated under time targets of 4 s.
 Additionally, a match response bias emerged consistently across blocks,
 and indicated that separately to time pressure, performance also
 deteriorated due to time passage. These results therefore indicate that
 both time passage and pressure exert detrimental effects on face matching.
description: FaceMatchingTimePressure_SupplementaryDataThe data in this file provide percentage accuracy scores, mean correct response times, and signal detection scores for each subject, across both analyses used in Experiments 1 and 2.
DOI: 10.15468/dl.gafpug
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Melilotus officinalis"
 ]
}

 The dataset includes 192 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000927-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4khppw
title: Occurrence Download

description: A dataset containing 13063778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Podicipediformes, Procellariiformes, Pelecaniformes, Anseriformes, Ciconiiformes, Gruiformes, Charadriiformes, Gaviiformes)",
 "Year 2022-2022"
 ]
}

 The dataset includes 13063778 records from 1419 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000852-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x7f34
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ruta chalepensis",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025848-250811113504898/datasets/export for details.
DOI: 10.15468/dl.ku79w6
title: Occurrence Download

description: A dataset containing 1529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heimia salicifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1529 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007614-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6y433
title: Occurrence Download

description: A dataset containing 956594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Erithacus rubecula",
 "Year 2020-2024"
 ]
}

 The dataset includes 956594 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007549-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d34tjb
title: Occurrence Download

description: A dataset containing 1582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex atrata, Carex atrata, Carex atrata, Carex aterrima, Carex aterrima)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1582 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007615-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3510022801-eng
title: Average counts of adults in federal and provincial custody by racial identity

description: Adult custodial supervision, average counts of adults in federal and provincial programs, by racial identity, five years of data.
DOI: 10.15468/dl.pmnved
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex buekii)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 956 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007617-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18460933
title: LINF_320022900

description: DNA polymerase alpha subunit B; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18460932
title: LINF_320022900

description: DNA polymerase alpha subunit B; Leishmania infantum (strain JPCM5)