cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23719/1368541
title: USEEIO v1.1 - Elementary Flows and Life Cycle Impact Assessment (LCIA) Characterization Factors

description: This dataset is part of the USEEIO v1.1 model release. It provides the elementary flows used in the USEEIO v1.1 Satellite Tables (DOI: 10.23719/1365565) and their matching characterization factors for the various indicators. The indicators are described and categorized. An original mapping file is also provided that shows the correspondence between original source names for resources, emissions, land, etc and USEEIO elementary flows. This dataset supersedes USEEIO Elementary Flows and Life Cycle Impact Assessment (LCIA) Characterization Factors(https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B8A87EE76-F047-43E1-A4B3-9D83BAE110C4%7D). It can be exported as a .csv file and used with the exported satellite tables and BEA 2007 Make and Use tables to build USEEIO v1.1 using the IO Model Builder (https://github.com/USEPA/IO-Model-Builder).
DOI: 10.23719/1369389
title: Drinking Water Microbiome Taxonomic Lineage Abundance Data Set

description: An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a ratio of all sequences obtained for each individual sample.
DOI: 10.23719/1369397
title: Respiratory Effects and Systemic Stress Response Following Acute Acrolein Inhalation in Rats

description: This data set is an Excel file pertaining to the study that examined nasal, pulmonary, and systemic effects of acrolein in rats acutely exposed to a range of concentrations.  The different tabs of the spreadsheet pertain to each figure found in the manuscript.
DOI: 10.23719/1371705
title: Data Set for: Step-by-Step Calculation and Spreadsheet Tools for Predicting Stressor Levels that Extirpate Genera and Species

description: The data includes measured data from Ecoregions 69 and 70 in West Virginia.  Paired biological and chemical grab samples are included.  These data were used to estimate SC extirpation concentration  (XC95) for benthic invertebrate genera.  Also included are cumulative frequency distribution plots, scatter plots fitted with generalized additive models, and biogeographical maps of observations of each genus.
The metadata and full data set is available in Supplemental Appendices S4 and S5, respectively. The output of 176 XC95 values from Ecoregions 69 and 70 are provided in Supplemental Appendix S6. Supplemental Appendix S7 depicts the probability of observing a genus for discrete ranges of SC. Supplemental Appendix S8 depicts the proportion of occurrence of a genus for discrete ranges of SC. Supplemental Appendix S9 shows the biogeographic distributions of the genera included in the data set. We also discuss limitations of this method to help avoid misinterpretations and inferential errors.  A data dictionary is provided in Cond_DataFileColumnMetada-20161221.
DOI: 10.23719/1373104
title: CMAQv5.1 with new dust AQS Hourly site compare files

description: CMAQv5.1 with a new dust module AQS Hourly sitex files containing hourly paired model/ob data for the AQS network.
DOI: 10.23719/1373706
title: Las Vegas Near Road Data - PM2.5 and Black Carbon

description: Las Vegas Near Road Data PM2.5 and Black Carbon Data
DOI: 10.23719/1374183
title: Experimental data sulfate and metal removal from mining impacted water collected at the Formosa Mine, OR, and sulfur speciation in the obtained solid residues.

description: The data set contains the elemental composition, pH, and sulfate content of the utilized mining impacted water used as influent in the columns study, the data for pH, Eh, Cd, Fe, Mn, Zn, sulfate and sulfate removal rate in the columns, and the data for an example XPS spectrum of sulfur from one of the collected solid residues from the bioactive column.
DOI: 10.23719/1375203
title: SA-PM versus SA-O3 complete data set_May 2014-August 2015

description: Raw data of cardiac and ventilatory responses to SA-PM and SA-O3
DOI: 10.23719/1375240
title: Photochemical smog and vitamin D deficiency

description: The dataset contains the results of a study examining the impact of vitamin D deficiency on the cardiopulmonary response of mice to photochemical smog.
DOI: 10.23719/1375338
title: Ozone and IUGR CMiller

description: Data related to the effects of peri-implantation ozone exposure on maternal and fetal health outcomes at the end of gestation.
DOI: 10.23719/1375440
title: Watershed impervious cover relative to stream location

description: Estimates of watershed (12-digit huc) impervious cover and impervious cover near streams and water body shorelines for three dates (2001, 2006, 2011) using NLCD data. Differences between watershed impervious cover and impervious cover near streams can be used to assess the spatial pattern of impervious cover within a watershed.
DOI: 10.23719/1375711
title: Effects of Simulated Smog in Rodent Models of Disease Dataset.

description:    The dataset includes the draft main paper and supporting information file to be submitted to the journal, and also excel spread sheets containing the raw data which backs up the processed data used in the paper and supporting information file.
    Data include exposure characterization (temperature, RH, pollutant levels, etc.), physiology data, serum data, lung inflammation data, viral burden data, PCR data, blood data, lung pathology data, and other miscellaneous data.  All the column headings and other relevant definitions and information are included in the data sets, and match the relevant data in the paper to be submitted.
DOI: 10.23719/1375712
title: Assembled cross-species perchlorate dose-response data

description: This data set contains dose-response data for perchlorate exposure in multiple species.  These data were assembled from peer-reviewed studies.  Species included in this dataset are: rats (Rattus sp.), meadow voles (Microtus sp.), rabbits (Oryctolagus cuniculus), the African clawed frog (Xenopus laevis), zebrafish (Danio rerio), mosquito fish (Gambusia holbrooki), the bobwhite quail (Colinus virginianus), earthworms (Eisenia foetida), mosquito larvae (Culex quinquefasciatus), the water flea (Daphnia magna), and the sand dollar (Peronella japonica).
DOI: 10.23719/1375804
title: Factors Affecting Annual Zostera

description: Dataset for figures in text and supplementary materials for a manuscript describing the influence of microtopographic variation and macroalgal cover on morphometrics and survival of the annual form of eelgrass (Zostera marina).
DOI: 10.23719/1376237
title: Supporting datasets for paper "Estimating Future Temperature Maxima in Lakes across the United States using a Surrogate Modeling Approach"

description: Model input and simulation output files
DOI: 10.23719/1376681
title: Small Scale MBR Monitoring Data

description: Real-time measurements of on-line parameters to assess water quality after treatment with a membrane bioreactor.
DOI: 10.23719/1376685
title: Ozonolysis of α/β-farnesene mixture: analysis of gas-phase and particulate reaction products

description: Atmospheric oxidation of sesquiterpenes has been of considerable interest recently because of their likely contribution to ambient organic aerosol, but farnesene oxidation has been reported in only a few studies and with limited data. In the present study, a detailed chemical analysis of the organic fraction of gas and particle phases originating from the ozonolysis of a mixture of α-farnesene and β-farnesene was carried out in a 14.5 m3 smog chamber. More than 80 organic compounds bearing OH functionality were detected for the first time in this system in the gas and particle phases. The major secondary organic aerosol (SOA) components included conjugated α farnesene trienols, hydroxyl carboxylic acid and its corresponding lactones, C3–C7 linear dicarboxylic acids, and hydroxy/carbonyl/carboxylic compounds. Of particular importance was 5,6-dihydroxy-6-methylheptan-2-one (DHMHO), which was detected at high concentration. In the gas phase, the main species identified were trienols and their corresponding epoxides and diepoxides. Proposed reaction schemes are provided for selected compounds. A similar analysis was performed for ambient PM2.5 samples collected during summer 2013 as part of the SOAS to determine farnesene contributions to PM2.5. Gas chromatography–mass spectrometry analysis were consistent with the occurrence of several farnesene SOA compounds, indicating the potential impact of farnesene on the regional aerosol burden. The high abundance of DHMHO in chamber SOA and its presence in ambient PM2.5 is particularly important because to our knowledge it is specific to farnesene and therefore could serve as an indicator for farnesene emitted into ambient aerosol. In the absence of authentic standards, however, it is difficult to accurately quantify the contribution of SOA originating from farnesene to ambient PM2.5.
DOI: 10.23719/1376728
title: Comparison of Five Modeling Approaches to Quantify and Estimate the Effect of Clouds on the Radiation Amplification Factor (RAF) for Solar Ultraviolet Radiation

description: Ultraviolet Radiation (UV) data collected at 21 US Environmental Protection Agency sites throughout the continental US, Alaska, Hawaii, and the US Virgin Islands from 1996 through 2004.
DOI: 10.23719/1377038
title: Speciation of ZnO and CuO nanoparticles exposed to culture medium and lymphocyte cells

description: Spectral fits and linear combination data for ZnO and CuO nanoparticles exposure during toxicity testing
DOI: 10.23719/1377842
title: The effectiveness of Light Rail transit in achieving regional CO2 emissions targets is linked to building energy use: insights from system dynamics modeling

description: Dataset is comprised of a series of journal publications  (in pdf form) that use system dynamics modeling to analyze the interactions among transportation, land use, economy and resources (water, energy) to yield sustainability outcomes, with a focus on achieving energy sustainability goals. In particular, the paper analyzes the tradeoffs and cumulative impacts of energy use across building and transportation types under a range of transportation and land use scenarios. In addition to the articles themselves, the dataset includes figures from the articles and a link to the model documentation, as well as tabular sources of input and calibration data and the full set of model output data.
DOI: 10.23719/1377869
title: Evaluation of air pollutant emissions projections from the GCAM-USA integrated assessment model

description: This dataset contains 2010 emissions of nitrogen oxides, sulfur dioxide, and fine particulate matter by sector and state as modeled using the GCAM-USA integrated assessment model, in comparison to the 2011 National Emissions Inventory (NEI).  In addition, the dataset includes 2025 projections from both GCAM-USA and the NEI.
The dataset includes data underlying the figures and tables in the following journal article:
Wenjing Shi et al. (2017), Projecting state-level air pollutant emissions using an integrated assessment model: GCAM-USA.  Applied Energy, in review.
DOI: 10.23719/1378453
title: Gridded Hourly O3 Data for NAM case contributed by USEPA

description: This dataset contains data contributed by EPA/ORD/NERL/CED researchers to the manuscript " Assessment and economic valuation of air pollution impacts on human health over Europe and the United States as calculated by a multi-model ensemble in the framework of AQMEII3" led by Dr. Ulas Im of Aarhus University in Denmark.
DOI: 10.23719/1378475
title: Data for human cell spheroid model of embryonic tissue fusion in vitro.

description: Epithelial-mesenchymal interactions drive embryonic fusion events during development and upon perturbation can result in birth defects. Cleft palate and neural tube defects can result from genetic defects or environmental exposures during development, yet very little is known about the effect of chemical exposures on fusion defects in humans because of the lack of relevant and robust human in vitro assays of developmental fusion behavior. Given the etiology and prevalence of cleft palate and the relatively simple architecture and composition of the embryonic palate, we sought to develop a three-dimensional culture system that could be used to study fusion behavior in vitro using human cells. We engineered human Wharton’s Jelly stromal cell (HWJSC) spheroids of defined size and established that 7 days of culture in osteogenesis differentiation medium was sufficient to promote an osteogenic phenotype consistent with embryonic palatal mesenchyme. HWJSC spheroids supported the attachment of human epidermal keratinocyte progenitor cells on the outer spheroid surface likely through deposition of collagens I and IV, fibronectin, and laminin, and co-cultured spheroids exhibited fusion behavior that was dependent on epidermal growth factor signaling and fibroblast growth factor signaling in agreement with palate fusion literature. The method described here may broadly apply to the generation of three-dimensional epithelial-mesenchymal co-cultures to study developmental fusion events in a format that is amenable to predictive toxicology applications.
DOI: 10.23719/1379484
title: Microbial raw data for UV-C LED disinfection study

description: This study evaluated ultraviolet (UV) light emitting diodes (LEDs) emitting at 260 nm, 280 nm, and the combination of 260|280 nm together for their efficacy at inactivating Escherichia. coli, MS2 coliphage, human adenovirus type 2 (HAdV2), and Bacillus pumilus spores; research included an evaluation of genomic damage. Inactivation by the LEDs was compared with the efficacy of conventional UV sources, the low-pressure (LP) and medium-pressure (MP) mercury vapor lamps. The work also calculated the electrical energy per order of reduction of the microorganisms by the five UV sources.For E. coli, all five UV sources yielded similar inactivation rates. For MS2 coliphage, the 260 nm LED was most effective. For HAdV2 and B. pumilus, the MP UV lamp was significantly more effective than the LP UV and UVC LED sources. When considering electrical energy per order of reduction, the LP UV lamp was the most efficient for E. coli and MS2, and the MPUV and LPUV were equally efficient for HAdV2 and B. pumilus spores. Among the UVC LEDs, the 280 nm LED unit required the least energy per log reduction of E. coli and HAdV2. The 280 nm and 260|280 nm LED units were equally efficient per log reduction of B. pumilus spores, and the 260 nm LED unit required the lowest energy per order of reduction of MS2 coliphage. The combination of the 260 nm and 280 nm UV LED wavelengths was also evaluated for potential synergistic effects. No dual-wavelength synergy was detected for inactivation of all four microorganisms, nor for DNA/RNA damage.
DOI: 10.23719/1379488
title: Illumina sequencing data for MEC study on high biofilm conductivity in a Geobacter-enriched biofilm

description: This study systematically assessed intracellular electron transfer (IET) and extracellular electron transfer (EET) kinetics with respect to anode potential (Eanode) in a mixed-culture biofilm anode enriched with Geobacter spp. High biofilm conductivity (0.96–1.24 mScm^-1) was maintained during Eanode changes from -0.2 to +0.2 V versus the standard hydrogen electrode (SHE), although the steady-state current density significantly decreased from 2.05 to 0.35 Am^-2 in a microbial electrochemical cell. Substantial increase of the Treponema population was observed in the biofilm anode at Eanode=+0.2 V, which reduced intracellular electron-transfer kinetics associated with the maximum specific substrate-utilization rate by a factor of ten. This result suggests that fast EET kinetics can be maintained under dynamic Eanode conditions in a highly conductive biofilm anode as a result of shift of main EET players in the biofilm anode, although Eanode changes can influence IET kinetics.
DOI: 10.23719/1389322
title: Photocatalytic oxidation of aromatic amines using MnO2@g-C3N4

description: An efficient and direct oxidation of aromatic amines to aromatic azo-compounds has been achieved using a MnO2@g-C3N4 catalyst under visible light as a source of energy at room temperature.
DOI: 10.23719/1390112
title: GMAP Charleston data

description: GMAP mobile monitoring data from Charleston study and C-PORT results
DOI: 10.23719/1390127
title: Data contributed by EPA/ORD/NERL/CED researchers to the manuscript "Advanced Error Diagnostics of the CMAQ and CHIMERE modeling systems within the AQMEII3 Model Evaluation Framework"

description: This dataset contains the data contributed by EPA/ORD/NERL/CED researchers to the manuscript "Advanced Error Diagnostics of the CMAQ and CHIMERE modeling systems within the AQMEII3 Model Evaluation Framework" led by Dr. Efisio Solazzo of the European Commission's Joint Research Center.
DOI: 10.23719/1390128
title: Occurrence and in vitro bioactivity of estrogen, androgen, and glucocorticoid compounds in a nationwide screen of United States stream waters

description: In vitro bioactivity concentrations and chemical concentrations of estrogens, androgens, and glucocorticoids from a nationwide screen of United States stream water samples.  In vitro bioassays include T47D-Kbluc, MDA-kb2, and a CV-1 cell line transduced with human glucocorticoid receptor.
DOI: 10.23719/1391808
title: High-throughput in-silico prediction of ionization equilibria for pharmacokinetic modeling

description: Estimates of ionization equilibrium constants (i.e., pKa) were analyzed for 8,132 pharmaceuticals and 24,281 other compounds to which humans might be exposed in the environment. Results revealed broad differences in the ionization of pharmaceutical chemicals and chemicals with either near-field (in the home) or far-field sources. Probability distributions corresponding to ionizable atom types (IATs) were then used to analyze the sensitivity of predicted Vdss on predicted pKa using Monte Carlo methods. 8 of the 22 compounds were predicted to be ionizable. For 5 of the 8 the predictions based upon ionization are significantly different from what would be predicted for a neutral compound. For all but one (foramsulfuron), the probability distribution of predicted Vdss generated by IAT sensitivity analysis spans both the neutral prediction and the prediction using ionization.
DOI: 10.23719/1394116
title: St Francis Hydro, Soils data

description: We collected data 2012-2016 covering spatially-explicit, soil layering, bulk density, drainage rate (2012, 2015) infiltration into rain garden mulch and mineral soil layers; and full water cycle monitoring data. Links for the latter are given in the SDM document.
DOI: 10.23719/1398251
title: Data for figure 2 and study conclusions.

description: Projected global methane emissions from lakes and reservoirs under scenarios of enhance eutrophication.
DOI: 10.23719/1407527
title: Characterization of Emissions from Liquid Fuel and Propane Open Burns

description: emission factor data
DOI: 10.23719/1407549
title: AOP-Wiki Event Component Annotation

description: This dataset contains ontology terms associated with key events from the AOP-Wiki.  This information was used to seed the AOP-Wiki with a carefully selected set of ontology terms prior to opening up the option for authors to tag their own AOPs. This is intended to provide existing examples for authors and improve consistency when assigning terms to the key events.
DOI: 10.23719/1407561
title: TDS-TSS-Flow Data Used_IMWA_Eval Relationships between TDS and TSS in a mining-influenced watershed

description: TDS, TSS, and Flow data used for developing and testing relationships in the Clear Creek Watershed, Colorado.  Data for development of relationships was collected by Barbara Butler while at the Colorado School of Mines.  Data for testing relationships was obtained from Tim Steele of TDS Consulting in Colorado as provided by the Upper Clear Creek Watershed Association.
DOI: 10.23719/1407576
title: Data and code files for co-occurrence modeling project

description: Files included are original data inputs on stream fishes (fish_data_OEPA_2012.csv), water chemistry (OEPA_WATER_2012.csv), geographic data (NHD_Plus_StreamCat); modeling files for generating predictions from the original data, including the R code (MVP_R_Final.txt) and Stan code (MV_Probit_Stan_Final.txt); and the model output file containing predictions for all NHDPlus catchments in the East Fork Little Miami River watershed (MVP_EFLMR_cooc_Final).
DOI: 10.23719/1407577
title: Space-time paired simulation-observation records

description: Files uploaded to ScienceHub pair the model results in space and time to observations of NCAR NOy, NO, NO2 and O3, UC Berkeley NO2, peroxy nitrates, alkyl nitrates, and nitric acid, made aboard the NASA P3B aircraft during the DISCOVER-AQ, Maryland, 2011. Data are paired as follows: Model predictions are paired with aircraft measurements in space where aircraft latitude, longitude, altitude were matched to nearest grid cell center and model layer center height.  Fifteen second averages of measurements were matched to modeled estimates in time to the nearest hour.

Observational data is also archived at the NASA LaRC Atmospheric Sciences Data Center (https://www-air.larc.nasa.gov/data.htm)
DOI: 10.23719/1407591
title: Evaluation of SWAT reservoir, ponds, and wetlands tools in water and sediment simulation in the Rock River watershed

description: The dataset supported findings in the study:
"Evaluation of SWAT reservoir, ponds, and wetlands tools in water and sediment simulation in the Rock River watershed".
Results of this study demonstrate the impact of impoundments in SWAT modeling.The dataset includes sources of the SWAT input data.
DOI: 10.23719/1407601
title: Role of solution chemistry in the retention and release of graphene oxide nanomaterials in uncoated and iron oxide-coated sand (Journal Article: Science of the Total Environment; 579: 776-785)

description: Laboratory experimental data include: 1) transport and retention of graphene oxide nanomaterials (GONMs) in packed-columns under different KCl and CaCl2 concentrations in pure sand and iron oxide-coated sands; 2) average hydrodynamic size of GONMs using dynamic light scattering (DLS); and 3) zeta potentials of GONMs.

Other data include: Derjaguin-Landau-Verwey-Overbeek (DLVO) interaction energy using surface element integration (SEI) technique.
DOI: 10.23719/1407602
title: Biofiltration of trihalomethanes stripped from chlorinated drinking water 

description: This study examined the removal of chloroform under two environmental conditions (anaerobic and aerobic), and in the presence of ethanol as co-metabolite.  Investigations of the biological community structure within the BTFs were also conducted. The use of aerobic fungi BTF under acidic condition successfully enhanced the biodegradation process of chloroform. The BTF provided more stable performance by having smaller standard deviation in the removal efficiency as compared to the anaerobic BTF. Hence, acidic aerobic BTF had achieved significant improvement in the removal of chloroform.
DOI: 10.23719/1500015
title: CMAQv502 Base AQS Hourly site compare output

description: Monthly AQS hourly site compare output files for the CMAQv502 Base simulation. Monthly files contain hourly paired model/ob data for the AQS network. These data were used in some of model/ob plot provided in the manuscript.
DOI: 10.23719/1365653
title: Phthalate SHEDS-HT runs

description: Inputs and outputs for SHEDS-HT runs of DiNP, DEHP, DBP.
DOI: 10.23719/1369388
title: Drinking Water Microbiome OTU Abundance Data Set

description: An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained for each individual sample.
DOI: 10.23719/1371467
title: Potential Wetland Restoration Indicators data for the EnviroAtlas

description: Data is based on overlap of topographic, soil drainage, and national wetland inventory areas.