cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/a1mpd0
title: Replication Data and Code for: "Carnivorous Nepenthes pitchers with less acidic fluid house nitrogen-fixing bacteria"

description: Abstract:
Background. Carnivorous pitcher plants are well known for a unique adaptation to nitrogen limitation: pitchers are pitfall traps used to capture and digest insect prey, and acquire nutrients. Pitcher plants in the genus Sarracenia appear to also use nitrogen fixed by bacteria inhabiting the aquatic microcosms within pitchers. To investigate whether species of a convergently evolved pitcher plant genus, Nepenthes, also use this alternative strategy for nitrogen capture, we measured the presence and relative abundance of an essential nitrogen fixation gene, nifH, in Nepenthes microbiome samples taken from pitcher fluids, and measured correlations between nifH abundance and pitcher characteristics.
Methods. We used four approaches to investigate nitrogen fixation in pitcher fluid samples. First, we used 16S rRNA sequence data from the fluids of three species of Singaporean Nepenthes to construct a PICRUST-predicted metagenome of the pitcher plant microbes and correlate predicted nifH abundances with sample metadata. Second, we used gene-specific primers to amplify and quantify the presence or absence of nifH directly from our environmental samples. Third, we complemented our results from Singapore by analyzing nifH relative abundances in eight shotgun metagenomes from four additional Nepenthes species from Malaysian Borneo. Finally, we conducted an acetylene reduction assay using the pitcher fluids of Nepenthes housed in a greenhouse to prove nitrogen fixation is possible within the Nepenthes pitcher habitat. 
Results. The gene nifH frequently appears in the microbial communities of Nepenthes pitchers, and variation in nifH presence correlates with host plant species identity and particularly strongly with pitcher fluid acidity. The genes are more commonly found in more neutral fluids. We also present evidence for active acetylene reduction in greenhouse Nepenthes pitcher fluid. 
Discussion. In the aggregate, data suggest Nepenthes pitcher plants have the potential to access nitrogen via bacterial nitrogen fixation in addition to accessing nitrogen from the digestion of insect prey. Moreover, the proliferation of nitrogen-fixing bacteria appears to be associated with physiological features of the pitchers, and particularly fluid pH. Endogenous Nepenthes digestive enzymes are most active at low pH levels. Thus, we hypothesize Nepenthes species experience a tradeoff in nitrogen acquisition: when fluids are acidic, nitrogen is primarily acquired via plant enzymatic degradation of insects, but when fluids are neutral, Nepenthes plants may take up more nitrogen via bacterial nitrogen fixation in pitcher microcosms.
DOI: 10.7910/dvn/pt4bra
title: Meditation as an Effective BCI Training Protocol for Controlling Wheeled Robots

description: Dataset of Meditation as an Effective BCI Training Protocol for Controlling Wheeled Robots research article.
DOI: 10.7910/dvn/uyv3le
title: Replication Data for: "Who'll Stop the Rain? Repeated Disasters and Attitudes Toward Government"

description: These replication files allow for full replication of the analyses in "Who'll Stop the Rain? Repeated Disasters and Attitudes Toward Government," published in Social Science Quarterly, by Joshua P. Darr, Sarah D. Cate, and Daniel S. Moak.
DOI: 10.7910/dvn/dfg1tw
title: Wright Files I-Z Edited; Docketed Case: 21364
DOI: 10.7910/dvn/l90ar
title: House Unpassed Legislation 1840, Docket 788, SC1/series 230, Petition of Nathaniel H. Whiting

description: &lt;p&gt;Petition subject: Against the gag rule &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:10956345"&gt;http://nrs.harvard.edu/urn-3:FHCL:10956345&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Abington &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: John Cushing &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Nathaniel H. Whiting&lt;/li&gt;&lt;li&gt;David Cushing&lt;/li&gt;&lt;li&gt;Elias Shaw&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 181 &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 181 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: citizens, ["legal voters"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1840, Docket 788 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/dfb7vw
title: Executive Agreements Database, Statement Regarding Agreement Between The United States of America and The Republic Of Armenia Regarding the Surrender Of Persons To International Tribunals Signed At Yerevan October 16, 2004 Entered Into Force On March 17, 2005

description: TIAS 05-317

cover memo
DOI: 10.7910/dvn/i4xuc5
title: Replication Data for: Pooled testing conserves SARS-CoV-2 laboratory resources and improves turn-around time: experience at KEMRI-Wellcome Trust Programme, Kenya

description: These data is part of the nationwide testing of SARS-CoV-2 at the KEMRI-Wellcome Trust Programme, Kenya. It contains results of specimens collected between in June 2020 which were processed and screened for SARS-COV-2 using real-time polymerase chain reaction (RT-PCR). Aside from that, it also contains the quantification cycle (Ct) values for both the pools and the individual Ct values. The data is used to describe the experience of using pooled testing at KEMRI-Wellcome Trust Programme, Kenya.
DOI: 10.7910/dvn/uxkzwk
title: Administrative divisions of Romania in 1943

description: The dataset depicts the administrative boundaries of Romania (the counties/Ro. judeţe and the districts/Ro. plăși) in 1943. Main sources: 1. Împărţirea administrativă a României: întocmită după actele oficiale emanate până la 31 martie 1943 aflate in arhiva direcțiunii administrației locale (Bucharest, 1943); 2. Wilfried Krallert, Volkstumskarte von Rumänien: auf Grund der Ergebnisse der amtlichen rumänischen Zählung über die Volkszugehörigkeit von 1930 (Wien, 1940).
DOI: 10.7910/dvn/elrum5
title: Wright Casebook Edited; Docketed Case: 22,143
DOI: 10.7910/dvn/3zeje9
title: Petition of Joshua Ralph

description: &lt;p&gt;Petition subject: Marriage &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:26855840"&gt;http://nrs.harvard.edu/urn-3:FHCL:26855840&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1733-08 &lt;/p&gt; &lt;p&gt;Petition location: Eastham &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Joshua Ralph&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Males of color signatures: 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: Esqr Indian justice in behalf of his son Joshua Ralph Junr late of Eastham aforsd whale fisherman, [males of color] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Native American tribe: Mashpee &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt; &lt;p&gt;Additional archivist notes: permission for his son Joshua Ralph Jr. to marry Rachel Francis, supposed widow of Francis Francis Jr., perished in storm during whaling expedition with Ebenezer Paine, sloop, Boston, Cape Cod, shipwrecks, marriages, justices of the peace, attorney, minister, clergy, religious, Barnstable county, esquire, lawyer, Jonathan Belcher &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 31, pages 181-182 &lt;/p&gt;
DOI: 10.7910/dvn/jrjumr
title: Holzgruber et al., 2024

description: Raw data and exact p-values
DOI: 10.7910/dvn/apjbbb
title: Passed Acts; St. 1905, c.328, SC1/series 229, Petition of Walter A. Webster

description: &lt;p&gt;Petition subject: Abraham Lincoln legal holiday &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:25455160"&gt;http://nrs.harvard.edu/urn-3:FHCL:25455160&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Boston &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Walter A. Webster, Boston; committee on probate and chancery &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Walter A. Webster&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1905-01-26,1905-01-30 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on January 26, 1905 and referred to the committee on probate and chancery and sent for concurrence and received in the Senate on January 30, 1905 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: citizen &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: 908 Tremont Building, Boston, anniversary of the birthday &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: St. 1905, c.328, passed April 25, 1905 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.5281/zenodo.15241729
title: Unified Model 1.5 km configuration dataset used in "Impact of horizontal resolution on numerical weather predicted sensible heat fluxes in London"

description: These data are used in Chapter 4, “Impact of horizontal resolution on numerical weather predicted sensible heat fluxes in London” in the University of Reading thesis "Urban surface-atmosphere exchanges: scintillometry observations and NWP evaluation" submitted by Beth Saunders, 2024. 

The NWP (Met Office Unified Model, UM) dataset consists of a one-day case study (13th May 2016, day-of-year 134). Some of the experimental setup (observations) is also described in Saunders et. al 2024: “Methodology to evaluate numerical weather predictions using large aperture scintillometry sensible heat fluxes: demonstration in London”, DOI: https://doi.org/10.1002/qj.4837. File names and subdirectories are named in the format year + day of year (DOY).

These data correspond to the 1.5 km configuration of the UM, which are run offline over London. 100 m and 300 m configurations of this model run are also available (10.5281/zenodo.15169388 and 10.5281/zenodo.15241722 respectively).
description: The authors acknowledge the funding and support from the NERC Case studentship (NE/N008103/1) and ERC urbisphere (855005).
DOI: 10.5281/zenodo.15241730
title: Unified Model 1.5 km configuration dataset used in "Impact of horizontal resolution on numerical weather predicted sensible heat fluxes in London"

description: These data are used in Chapter 4, “Impact of horizontal resolution on numerical weather predicted sensible heat fluxes in London” in the University of Reading thesis "Urban surface-atmosphere exchanges: scintillometry observations and NWP evaluation" submitted by Beth Saunders, 2024. 

The NWP (Met Office Unified Model, UM) dataset consists of a one-day case study (13th May 2016, day-of-year 134). Some of the experimental setup (observations) is also described in Saunders et. al 2024: “Methodology to evaluate numerical weather predictions using large aperture scintillometry sensible heat fluxes: demonstration in London”, DOI: https://doi.org/10.1002/qj.4837. File names and subdirectories are named in the format year + day of year (DOY).

These data correspond to the 1.5 km configuration of the UM, which are run offline over London. 100 m and 300 m configurations of this model run are also available (10.5281/zenodo.15169388 and 10.5281/zenodo.15241722 respectively).
description: The authors acknowledge the funding and support from the NERC Case studentship (NE/N008103/1) and ERC urbisphere (855005).
DOI: 10.7910/dvn/8v7ppe
title: Replication Data for: Citations to the Publications of Male and Female Political Scientists

description: Much prior research finds women earn fewer citations than men for their publications and offers various reasons why that is the case. We offer new evidence on such citation differences from two data sets on career citations earned by male and female political scientists. Our findings extend and elaborate those in earlier research. Most notably, we find that older cohorts of women demonstrate substantial progress toward citation equity with their male peers.
DOI: 10.7910/dvn/lerjaj
title: Passed Acts; St. 1843, c.69, SC1/series 229

description: &lt;p&gt;Petition subject: Great Massachusetts Petition &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13448109"&gt;http://nrs.harvard.edu/urn-3:FHCL:13448109&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Bridgewater &lt;/p&gt; &lt;p&gt;Total signatures: 15 &lt;/p&gt; &lt;p&gt;Unidentified signatures: 15 &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: George Latimer [note: this data reflects the information on the spreadsheet submitted by Henry I. Bowditch and William F. Channing to the legislature, which was filed with St. 1843, c.69, passed April 26, 1843. The majority of the Great Massachusetts Petition has not been located.] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: St. 1843, c.69, passed April 26, 1843 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/fodwrv
title: Dan R Laks Code of Seurat analysis integration of 20 GBM from Neftel et al., 2019

description: Code for RSTUDIO with Seurat package integration and analysis of scRNA-Seq data for 20 GBM from Neftel et al., 2019
DOI: 10.7910/dvn/i4lufc
title: PDB - 2DD8 - Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody, (312K, 39°C, 100 ns) RMSD, SASA, RMSF, Rg, H-bonds

description: PDB - 2DD8 - Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody, (312K, 39°C, 100 ns) RMSD, SASA, RMSF, Rg, H-bonds
DOI: 10.7910/dvn/fbpzqc
title: Sparse Linear Discriminant Analysis for Simultaneous Gene Set/Pathway Significance Test and Gene Selection

description: MOTIVATION: Pathway and gene set based approaches for the analysis of gene expression profiling experiments have become increasingly popular for addressing problems associated with individual gene analysis. Since most genes are not differently expressed, existing gene set tests, which consider all the genes within a gene set, are subject to considerable noise and power loss, a concern exacerbated in studies in which the degree of differential expression is moderate for truly differentially expressed genes. Fora significantly differentially expressed pathway, it is also of substantial interest to select important genes that drive the differential expression of the pathway. METHODS: We develop a unified framework to jointly test the significance of a pathway and to select a subset of genes that drive the significant pathway effect. To achieve dimension reduction and gene selection, we decompose each gene pathway into a single score by using a regularized form of linear discriminant analysis, called sparse linear discriminant analysis (sLDA). Testing for the significance of the pathway effect proceeds via permutation of the sLDA score. The sLDA based test is compared to competing approaches with simulations and two application: a study on the effect of metal fume exposure on immune response and a study of gene expression profiles among Type II Diabetes patients. RESULTS: Our results show that sLDA based testing provides a powerful approach to test for the significance of a differentially expressed pathway and gene selection. AVAILABILITY: An implementation of the proposed sLDA based pathway test in the R statistical computing environment is available at http://www.hsph.harvard.edu/~mwu/software/ CONTACT: xlin@hsph.harvard.edu
DOI: 10.7910/dvn/phhcnu
title: How to find H63D Syndrome Research in Harvard Dataverse

description: Guide for readers.
DOI: 10.7910/dvn/4xx75
title: Passed Acts; St. 1863, c.193, SC1/series 229, Petition of Lewis Hayden

description: &lt;p&gt;Petition subject: Military companies &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:10935189"&gt;http://nrs.harvard.edu/urn-3:FHCL:10935189&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Massachusetts &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: George P. Clapp, Boston; committee on federal relations &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Lewis Hayden&lt;/li&gt;&lt;li&gt;Thomas Dalton&lt;/li&gt;&lt;li&gt;Mark De Mortie&lt;/li&gt;&lt;li&gt;Edmund Jackson&lt;/li&gt;&lt;li&gt;Edward Lawton&lt;/li&gt;&lt;li&gt;Henry W. Johnson&lt;/li&gt;&lt;li&gt;John V. de Grasse&lt;/li&gt;&lt;li&gt;Edward Ruhler&lt;/li&gt;&lt;li&gt;Nelson L. Perkins&lt;/li&gt;&lt;li&gt;Lorenzo D. Johnson&lt;/li&gt;&lt;li&gt;John H. Sterling&lt;/li&gt;&lt;li&gt;Michael Onley&lt;/li&gt;&lt;li&gt;William Mannix&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1863-01-28,1863-01-24 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on January 28, 1863 and referred to the committee on federal relations and sent for concurrence and received in the Senate on January 24, 1863 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 17 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Males of color signatures: 17 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: colored men, citizens, [males of color], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: To strike the word "white" from section 1, chapter 13 of the general statutes, military service, [doctor, M.D. next to de Grasse signature], ["…in order that the state may no longer stand in opposition to the patriotic desires of any portion of her citizens who are willing to give their service and if need be their lives in the cause of the Republic."] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: St. 1863, c.193, passed April 27, 1863 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/k142hp
title: Polish Sign Language Alphabet 100

description: This is a raw dataset of signs in Polish Sign Language alphabet. The dataset is collected in natural daylight lighting conditions, where photos were taken at the distance of 0.5m between the subject on the photos and the camera. This dataset is collected by the author and merged with relevant signs from different datasets outlined in detail in the undergraduate thesis: "Polish Sign Language recognition with convolutional neural networks" submitted at Minerva Schools at KGI.
DOI: 10.7910/dvn/ea2xep
title: Wright Casebook Edited; Docketed Case: 74-1505
DOI: 10.7910/dvn/fea17w
title: PELE VATWAM (TOKI BATU)

description: MY DOCUMENT HAVE COPYRIGHT AND THE NUMBER IS EC00202042521, AS INVENTOR
description: This data is reproduce from original data set of previous publication on art video which is already submitted to have copyright.
DOI: 10.7910/dvn/53f81r
title: Replication Data for: "Uncertainty Traps"

description: The data and programs replicate tables and figures from "Uncertainty Traps", by Fajgelbaum, Schaal, and Taschereau-Dumouchel. Please see the Readme file for additional details.
DOI: 10.7910/dvn/argaiu
title: Wright Casebook Edited; Docketed Case: 81-2350
DOI: 10.7910/dvn/6ducw2
title: Wright Files I-Z Edited; Docketed Case: 74-1832