cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30662654.v2
title: data

description: Despite extensive studies on the taxonomic diversity and metabolic capacity of microbiomes in response to drought, drought effects on the soil microbial co-occurrence networks and their function roles are less understood. This is partly due to the distinct microbial composition and activities in the rhizosphere compared to bulk soil.Here, we conducted a 2-year controlled watering experiment to examine the effects of drought on the network structure and functions of soil microbiomes in both the rhizosphere and bulk soil of the native grass <i>Bothriochloa ischaemum</i>. We evaluated the secretion rate and composition of root exudates linked to microbial variation under three different watering regimes: well-watered (80% field capacity), moderate drought (60% field capacity), and severe drought (40% field capacity). Microbial community composition was analyzed using amplicon sequencing, and functional gene abundance was quantified via qPCR.We found that, compared to the weak response of the microbial community in the bulk soil, drought markedly reduced the diversity of bacteria, fungi and protists, their network complexity (e.g., nodes and edges numbers, average degree, modularity, and clustering coefficient), and the abundance of genes related to C degradation (<i>sga</i>,<i> amyX</i>,<i> abfA</i>,<i> and xlyA</i>), N fixation (<i>nifH</i>), ammonification (<i>ureC</i>), denitrification (<i>nirK</i> and <i>nirS</i>), and assimilatory (<i>nasA</i>) and dissimilatory (<i>napA</i>) N reduction in the rhizosphere. The reduction in microbial network complexity and reduced C- and N transformation genes were highly correlated with the drought-induced decline in root C exudation and changes in the component diversity of exudate components, including amino acids, lipids, organic acids, vitamins, cofactors and carbohydrates. Among the root exudates, organic acids played a crucial role in shaping microbial occurrence networks, while amino acids were essential in regulating functional genes involved in C and N cycling.
DOI: 10.6084/m9.figshare.30662654.v1
title: data

description: Despite extensive studies on the taxonomic diversity and metabolic capacity of microbiomes in response to drought, drought effects on the soil microbial co-occurrence networks and their function roles are less understood. This is partly due to the distinct microbial composition and activities in the rhizosphere compared to bulk soil.Here, we conducted a 2-year controlled watering experiment to examine the effects of drought on the network structure and functions of soil microbiomes in both the rhizosphere and bulk soil of the native grass <i>Bothriochloa ischaemum</i>. We evaluated the secretion rate and composition of root exudates linked to microbial variation under three different watering regimes: well-watered (80% field capacity), moderate drought (60% field capacity), and severe drought (40% field capacity). Microbial community composition was analyzed using amplicon sequencing, and functional gene abundance was quantified via qPCR.We found that, compared to the weak response of the microbial community in the bulk soil, drought markedly reduced the diversity of bacteria, fungi and protists, their network complexity (e.g., nodes and edges numbers, average degree, modularity, and clustering coefficient), and the abundance of genes related to C degradation (<i>sga</i>,<i> amyX</i>,<i> abfA</i>,<i> and xlyA</i>), N fixation (<i>nifH</i>), ammonification (<i>ureC</i>), denitrification (<i>nirK</i> and <i>nirS</i>), and assimilatory (<i>nasA</i>) and dissimilatory (<i>napA</i>) N reduction in the rhizosphere. The reduction in microbial network complexity and reduced C- and N transformation genes were highly correlated with the drought-induced decline in root C exudation and changes in the component diversity of exudate components, including amino acids, lipids, organic acids, vitamins, cofactors and carbohydrates. Among the root exudates, organic acids played a crucial role in shaping microbial occurrence networks, while amino acids were essential in regulating functional genes involved in C and N cycling.
DOI: 10.5281/zenodo.17694517
title: Thermal runaway experimental data (supplementary material to the paper)
DOI: 10.5281/zenodo.17694518
title: Thermal runaway experimental data (supplementary material to the paper)
DOI: 10.15468/dl.dtgz3u
title: Occurrence Download

description: A dataset containing 3646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Grus grus"
 ]
}

 The dataset includes 3646 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004951-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mgmz4
title: Occurrence Download

description: A dataset containing 136209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON(( -122.579833609134 38.295142783213 , -121.985474401023 38.295142783213 , -121.985474401023 38.9510779503872 , -122.579833609134 38.9510779503872 , -122.579833609134 38.295142783213 ))",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 136209 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004943-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzjb87
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Hermit crabs (Crustacea: Decapoda: Anomura: Paguroidea) of the Northern Marianas, including new records and an updated checklist"
 ]
}

 The dataset includes 164 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004954-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txucky
title: Occurrence Download

description: A dataset containing 11021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON(( -121.507599856648 39.5160963010035 , -120.746812965946 39.5160963010035 , -120.746812965946 39.9337141638776 , -121.507599856648 39.9337141638776 , -121.507599856648 39.5160963010035 ))",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 11021 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004955-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17694307
title: Datos fisicoquímicos, microbiológicos y sensoriales de fréjol cocido (Phaseolus vulgaris L.) tratado con ozono y aceite esencial de orégano

description: Los datos contiene los resultados experimentales de la investigación titulada "Efecto del aceite esencial de orégano y ozonización como alternativa para la prolongación del tiempo de vida útil en fréjol cocido (Phaseolus vulgaris L.)", recogen mediciones tomadas durante un periodo de almacenamiento de 21 días. Incluye las variables, fisicoquímicas: pH y acidez titulable, microbiológicas: Recuentos de aerobios mesófilos, coliformes totales, sensoriales: Puntuaciones de paneles de cata para color, olor, sabor, textura y aceptabilidad general.Estos datos respaldan los análisis estadísticos (ANOVA y pruebas de Tukey) presentados en el artículo de investigación asociado.
DOI: 10.5281/zenodo.17694308
title: Datos fisicoquímicos, microbiológicos y sensoriales de fréjol cocido (Phaseolus vulgaris L.) tratado con ozono y aceite esencial de orégano

description: Los datos contiene los resultados experimentales de la investigación titulada "Efecto del aceite esencial de orégano y ozonización como alternativa para la prolongación del tiempo de vida útil en fréjol cocido (Phaseolus vulgaris L.)", recogen mediciones tomadas durante un periodo de almacenamiento de 21 días. Incluye las variables, fisicoquímicas: pH y acidez titulable, microbiológicas: Recuentos de aerobios mesófilos, coliformes totales, sensoriales: Puntuaciones de paneles de cata para color, olor, sabor, textura y aceptabilidad general.Estos datos respaldan los análisis estadísticos (ANOVA y pruebas de Tukey) presentados en el artículo de investigación asociado.
DOI: 10.15468/dl.2wdrmc
title: Occurrence Download

description: A dataset containing 39111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Primates"
 ]
}

 The dataset includes 39111 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004957-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7vtgx
title: Occurrence Download

description: A dataset containing 1948426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coleoptera"
 ]
}

 The dataset includes 1948426 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004947-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3cmkh
title: Occurrence Download

description: A dataset containing 136209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON(( -122.579833609134 38.295142783213 , -121.985474401023 38.295142783213 , -121.985474401023 38.9510779503872 , -122.579833609134 38.9510779503872 , -122.579833609134 38.295142783213 ))",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 136209 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004949-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d98mz9
title: Occurrence Download

description: A dataset containing 2667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zapoteca formosa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2667 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004959-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13845108
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.8dhy45
title: Occurrence Download

description: A dataset containing 3674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON(( -123.502061487548 40.5209990718498 , -123.020468927299 40.5209990718498 , -123.020468927299 40.919642561555 , -123.502061487548 40.919642561555 , -123.502061487548 40.5209990718498 ))",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 3674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004961-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k926g6
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomy of the genus Periacma Meyrick (Lepidoptera: Autostichidae) from China, with a checklist of the world species"
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004960-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7uzka
title: Occurrence Download

description: A dataset containing 7350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-111.74974 33.16511,-111.67797 33.1642,-111.67912 33.23077,-111.74671 33.23172,-111.74974 33.16511))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 7350 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004962-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2w4ezj
title: Occurrence Download

description: A dataset containing 61597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ziziphus"
 ]
}

 The dataset includes 61597 records from 726 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004922-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxe8pr
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schoenoplectus",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 337 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009184-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw3kke
title: Occurrence Download

description: A dataset containing 7448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 64.085278",
 "DecimalLatitude is less than or equal to 69.085278",
 "DecimalLongitude is greater than or equal to -180.0",
 "DecimalLongitude is less than or equal to -175.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 7448 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009187-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekmke6
title: Occurrence Download

description: A dataset containing 1727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 49.085278",
 "DecimalLatitude is less than or equal to 54.085278",
 "DecimalLongitude is greater than or equal to -180.0",
 "DecimalLongitude is less than or equal to -175.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1727 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009186-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.883km2
title: Occurrence Download

description: A dataset containing 2101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -15.914722",
 "DecimalLatitude is less than or equal to -10.914722",
 "DecimalLongitude is greater than or equal to -180.0",
 "DecimalLongitude is less than or equal to -175.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2101 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009185-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e2egn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "OccurrenceStatus is Present",
 "TaxonKey is Cucumis dipsaceus"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009189-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h52gev
title: Occurrence Download

description: A dataset containing 20300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Smilax",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 20300 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009192-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17712895
title: Ciona+Paroxetine_Bioamines in Threat response
DOI: 10.5281/zenodo.17712894
title: Ciona+Paroxetine_Bioamines in Threat response
DOI: 10.15468/dl.2ngggp
title: Occurrence Download

description: A dataset containing 2615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Zanthoxylum bungeanum"
 ]
}

 The dataset includes 2615 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009193-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhh28t
title: Occurrence Download

description: A dataset listing the 135090 species recorded in GBIF matching the query:
{
 "PublishingCountry" : [
 "is China"
 ]
}

 The dataset's 135090 records were derived from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009179-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/xmyqho/mgjoew
title: moments_d50k.pt

description: :unav
DOI: 10.25625/xmyqho/5kaqx0
title: D50k_edited.h5

description: :unav
DOI: 10.25625/xmyqho/xz8fv2
title: D500_edit.h5

description: :unav
DOI: 10.25625/xmyqho/uwv4ur
title: regression_no_noise_0526.ckpt

description: :unav
DOI: 10.25625/xmyqho/cytlm3
title: regression_075_noise_0312.ckpt

description: :unav
DOI: 10.25625/xmyqho/sgxnqf
title: flow_matching_0331.ckpt

description: :unav
DOI: 10.25625/xmyqho/ujwiue
title: D50k_complex_field_5.h5

description: :unav
DOI: 10.25625/xmyqho/famwkr
title: D50k_complex_field_3.h5

description: :unav
DOI: 10.25625/xmyqho/mv2esf
title: D50k_complex_field_0.h5

description: :unav
DOI: 10.25625/xmyqho/9ho8sw
title: D50k_complex_field_4.h5

description: :unav
DOI: 10.25625/xmyqho/l7y3fm
title: D50k_complex_field_1.h5

description: :unav
DOI: 10.15468/dl.narppv
title: Occurrence Download

description: A dataset containing 3088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum carolinense",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 3088 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009194-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/xmyqho
title: Minimizing Structural Vibrations Dataset

description: Overview This repository contains two main datasets: a primary dataset with 51,000 plate geometries (each with 15 frequency solutions) intended for training and validation, and a test dataset with 500 geometries (each with 300 frequency solutions). Alongside the data, we provide the weights of the trained models. Included Files D50k_edited.h5: Dataset with 51,000 plate geometries and numerical solutions for 15 frequencies. D500_edit.h5: Dataset with 500 plate geometries and numerical solutions for 300 frequencies. moments_d50k.pt: Mean and standard deviation of the dataset. flow_matching_0331.ckpt: Flow matching model weights. regression_075_noise_0312.ckpt: Regression model weights, trained with noisy beading patterns. regression_no_noise_0526.ckpt: Regression model weights, trained with clean beading patterns. Data Format & Usage The datasets are saved in the HDF5 file format (.h5) and compressed with the "Blosc" compression filter. To read these files, you will need the hdf5plugin Python package. Include the following in your Python script: import h5py import hdf5plugin The HDF5 files contain the following keys: bead_patterns: The mesh geometry. z_vel_mean_sq: The frequency response. z_vel_abs: Velocity fields. phy_para: The scalar properties. frequencies: The frequencies for frequency response and velocity fields. ModeONet files In addition to the original version of the dataset, an updated version with the full complex velocity fields has been added. The dataset is split up into separate files with 10.000 samples each. The files are named D50k_complex_field_{id}.h5. The dataset field for the velocity fields is renamed to z_vel. The other fields remain the same. z_vel: Complex velocity fields. More Information Please refer to the paper as well as the code repository for a full introduction into this dataset.
DOI: 10.25625/xmyqho/jbh06t
title: D50k_complex_field_2.h5

description: :unav
DOI: 10.5281/zenodo.17181850
title: Raw data to: Wrapping it Up: Structural Basis of ADAMTS13 Global Latency

description: Initial configurations (PDB) and TIGER2hPE ensembles of all six simulations reported in this study in DCD trajectory format, along with major clusters.

AF2 Models of ADAMTS13-Del3To6 and Spacer-CUB1 binding

PDB of the final conformational inactive ADAMTS13-Del3To6 model

A set of scripts to facilitate the design of experimental setups

Movie file illustrating unravelling (activation) of conformational inactive ADAMTS13-Del3To6 model induced during Sim6 via constant velocity pulling and its reversal (inactivation)
DOI: 10.5281/zenodo.17202521
title: Raw data to: Wrapping it Up: Structural Basis of ADAMTS13 Global Latency

description: Initial configurations (PDB) and TIGER2hPE ensembles of all six simulations reported in this study in DCD trajectory format, along with major clusters.

AF2 Models of ADAMTS13-Del3To6 and Spacer-CUB1 binding

PDB of the final conformational inactive ADAMTS13-Del3To6 model

A set of scripts to facilitate the design of experimental setups

Movie file illustrating unravelling (activation) of conformational inactive ADAMTS13-Del3To6 model induced during Sim6 via constant velocity pulling and its reversal (inactivation)