cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28759088.v1
title: Supplementary Data 2 and 2 of the paper "Light and electron microscopy, molecular phylogeny and mannitol content of <i>Dictyotopsis propagulifera</i> (Dictyotales, Heterokontophyta) isolated from mangrove mud in Perak, Malaysia"

description: This study presents microscopic, phylogenetic and biochemical research into the previously little known alga <i>Dictyotopsis propagulifera</i>.
DOI: 10.6084/m9.figshare.28870538.v1
title: Charging-patterns- US_States

description: This dataset provides a comprehensive analysis of electric vehicle (EV) charging patterns and user behavior. It contains 1,320 samples of charging session data, including metrics such as energy consumption, charging duration, and vehicle details. Each entry captures various aspects of EV usage, allowing for insightful analysis and predictive modeling.
DOI: 10.6084/m9.figshare.29132204.v1
title: PRISMA 2020 Flow diagram

description: This systematic review and meta-analysis aimed to evaluate the incidence and perioperative risk factors for postoperative infectious pneumonia (PIP) in adult patients undergoing cardiothoracic surgery, including CABG, heart valve procedures, and thoracic oncologic surgeries. Following PRISMA 2020 guidelines, the authors conducted a rigorous search across PubMed, Embase, and Scopus for cohort studies published between January 2021 and December 2023. From 1,142 initial records, 6 high-quality cohort studies (totaling 4,392 patients) were included in the final analysis. The pooled incidence of PIP was 14.8% (95% CI: 10.6%–19.2%), with the highest rates observed after thoracic oncologic surgeries (17.2%). The most significant risk factors for PIP included: Prolonged mechanical ventilation &gt;48 hours (OR: 3.46) Advanced age &gt;70 years (OR: 2.71) Chronic obstructive pulmonary disease (COPD) (OR: 2.95) Extended cardiopulmonary bypass (CPB) time &gt;120 minutes (OR: 2.63) Reduced left ventricular ejection fraction (&lt;40%) (OR: 2.38) Statistical heterogeneity was moderate (I² = 46%), and no significant publication bias was detected. The study concludes that PIP is a frequent and serious complication after cardiothoracic surgery. Targeted preventive strategies—such as early extubation, lung-protective ventilation, and preoperative pulmonary optimization—are urgently needed to reduce the burden of this condition and improve surgical outcomes.
DOI: 10.6084/m9.figshare.9999629.v1
title: Data and analysis scripts for "Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow"

description: Phenotypic, genotype, and analysis scripts for "Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow"<br>Main growth analysis of the 5,051 seedlings can be reproduced by running the "04a-fit-full-model.R" script and loading the "full growth analysis.Rdata" dataset in R<br>Data for GEBV estimation with cross-validation not across families is contained within the directories in: run_642454_tmax_sum_dif_rgr_10fold_notacross_seed300.zip<br>Data for GEBV estimation with cross-validation across families is in: run_648224_tmax_sum_dif_rgr_10fold_acrossfams_seed300.zip<br>To reproduce the GEBV estimation and analysis, download the corresponding zip files that contains the R environment and datasets and use the "04d-analyze-models-cluster.R" script<br>"valley oak growth data - all seedlings.csv" contains the relative growth rates and relevant covariates for the 5,051 seedlings in an easy to read format<br>"gbs451_FIL-4_noLD.recode.vcf" contains the genotypes of each maternal tree in the study in VCF format<br><br>All data preparation and analysis scripts are available on Github: https://github.com/lukembrowne/Valley-oak-common-garden-growth-analysis<br><br><br><br>
DOI: 10.6084/m9.figshare.16415556.v1
title: Phased VCFs

description: These files contain phased variant calls for Prairie Rattlesnakes (<i>Crotalus viridis</i>) and Northern Pacific Rattlesnakes (<i>C. oreganus</i>).
DOI: 10.6084/m9.figshare.19665096.v1
title: Annotated dataset for weakly supervised Cotton boll detection and counting

description: This dataset is a part of our journal paper titled "Supervised and weakly supervised deep learning for segmentation and counting of cotton bolls using proximal imagery". It contains cotton boll images to detect and count using supervised and weakly supervised methods. The count annotations are provided along with the instance masks.
DOI: 10.6084/m9.figshare.23650098.v1
title: data

description: The means and standard deviations of the variables in "3.2 Description of variables and correlation analysis" in this study were considered to meet the minimum data set definition and enhancement requirements of the PLOS Journal.
DOI: 10.6084/m9.figshare.25623525.v1
title: Concurrent spin squeezing and field tracking with machine learning

description: The dataset contains:Steady_squeezing.zip <b>a)</b> data for steady squeezing data and characteraztion <b>b)</b> data for pulse RF magnetormeterTracking1.zip <b>a)</b> data of OU process for Deep learning <b>b)</b> data of OU-jump process for Deep learningTracking2.zip <b>a)</b> data of white noise process in backaction experiment <b>b) </b>data of white noise process in rearrange experimentCode <b>a)</b> Randomly signal generating code <b>b)</b> Deep learning codec.data pre-processing codeThe network is implemented using the torch 1.13.1 framework and CUDA 11.6 on Python 3.8.8. All weights are initialized with the torch default.The training process is run on a computer with CPU Intel(R) CoreTM i7-8700 and GPU NVIDIA GeForce RTX 2070 (8G RAM).Any questions about the codes or dataset are welcomed to the email 20110190074@fudan.edu.cn .
DOI: 10.6084/m9.figshare.25997230.v1
title: Supplementary Material for: Long-term dynamics of serum α-MSH and α-MSH-binding immunoglobulins with a link to gut microbiota composition in patients with anorexia nervosa

description: Introduction. Immunoglobulins (Ig) reactive with α-melanocyte-stimulating hormone (α-MSH), an anorexigenic neuropeptide, are present in humans and were previously associated with eating disorders. In this longitudinal study involving patients with anorexia nervosa (AN), we determined whether α-MSH in serum is bound to IgG and analyzed long-term dynamics of both α-MSH peptide and α-MSH-reactive Ig in relation to changes in BMI and gut microbiota composition. Methods. The study included 64 adolescents with a restrictive form of AN, whose serum samples were collected at hospital admission, discharge, and during a 1-year follow-up visit, and 41 healthy controls, all females. Results. We found that in both study groups, approximately 40% of serum α-MSH was reversibly bound to IgG and that levels of α-MSH-reactive IgG, but not of α-MSH peptide in patients with AN were low at hospital admission, but recovered 1-year later. Total IgG levels were also low at admission. Moreover, BMI-standard deviation score (SDS) correlated positively with α-MSH IgG in both groups studied, but negatively with α-MSH peptide only in controls. Significant correlations between the abundance of specific bacterial taxa in the gut microbiota and α-MSH peptide and IgG levels were found in both study groups, but they were more frequent in controls. Conclusion/Discussion. We conclude that IgG in the blood plays a role as an α-MSH binding protein, whose characteristics are associated with BMI in both patients with AN and controls. Furthermore, the study suggests that low production of α-MSH-reactive IgG during the starvation phase in patients with AN may be related to altered gut microbiota composition.
DOI: 10.6084/m9.figshare.26087797.v1
title: HiGTS_2006s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2006s1 contains the data from January 1, 2006 to March 31, 2006.
DOI: 10.6084/m9.figshare.27287622.v1
title: Tracking large bees in open landscapes with active radio tags – advantages and challenges using stationary receivers.

description: 1. Recent technological advancements have enabled to study animal movement of large insects, such as carpenter bees. Remote tracking devices reveal movement patterns by applying miniaturised very-high-frequency (VHF) tags on large insects, such as wild bees. VHF tags enable to study population dynamics and migration patterns and spatial distribution in ecologically relevant species supporting effective conservation strategies.2. We applied VHF transmitters on two European carpenter bee species, <i>Xylocopa valga</i> and <i>Xylocopa violacea,</i>with the aim to establish a remote tracking approach for large bees. We studied the effect of the tags on the species flight behavior and their movement patterns within an open grassland landscape in Central Europe.3. Here, we provide a detailed description of the transmitter application on the dorsal body of the bees<i>.</i><i> </i>We give a step-by-step guide from purchasing the material to constructing stationary receivers. We discuss potential pitfalls of stationary receivers and how to overcome them in the field. Further, we provide a data set and a script to process the information collected by the receivers with open-source programs.4. Our results indicate the importance of preliminary tests on the flight behaviour of the tagged bees as even miniaturized tags significantly affected the flight duration and time.
DOI: 10.6084/m9.figshare.3562491.v1
title: Appendix A. Detailed results of all statistical tests, means and confidence intervals or standard error, and figure showing vegetation response to restoration treatments.

description: Detailed results of all statistical tests, means and confidence intervals or standard error, and figure showing vegetation response to restoration treatments.
DOI: 10.6084/m9.figshare.8868596.v1
title: 4 well Bicosta minor draft assembly

description: This draft genome of B. minor was assembled by co-assembly of four single cells, see detailed methods in manuscript. <br>rename.1k.4well.B.minor.coassembly.fasta is the full assembly of the combined four wells.<br>B.minor.tetranucleotide.filtered.Choano-contigs.fa is the draft B. minor genome, with likely co-sorted prokaryotic or phage sequences (from, possibly, degraded prey) removed based on divergent tetranucleotide frequency.
DOI: 10.17632/xwz23rg8ws
title: Web System Adoption Dataset

description: This dataset contains variables such as compatibility, relative advantage, security, and cost as independent variables, with top management support serving as a mediating variable. The dependent variable in this study is the web system adoptin by SMEs.
DOI: 10.6084/m9.figshare.11919828.v1
title: Frischholz et al_data.xlsx

description: This files provides all data used for statistics in the manuscript Frischholz et al. entitled "Corticospinal drive does not contribute to increased torque production in the presence of residual force ehnhancement".<br>
DOI: 10.6084/m9.figshare.16940389.v1
title: Sow call dataset

description: 这是一个标准的母猪叫声数据集，包含四个常见类别，划分为2s一段。
DOI: 10.6084/m9.figshare.24867639.v1
title: dataset_gdm_predictors.txt

description: File: dataset_gdm_predictors (txt file)<br>Contents overview: Survey data on landscape variables in 30 plots and geographic coordinates in the Caatinga region, Northeast Brazil. <br>Plot: Sampling units were identified by the three study areas with 9 hectares. AL: PPN Faz. Almas; SJ: Estação Experimental de São João do Cariri; SP: Faz. São Paulo dos Dantas.lat: latitude geographic coordinates.lon: longitude geographic coordinates.fragmentation: Spatial arrangement metric. Forest fragmentation is expressed by the number of forest fragments per hectare.Densi_borda: Spatial arrangement metric. Edge density is the linear length of forest cover and woodlands measured in km. habitat_amount: Habitat amount for which we consider the proportion of forest cover and woodlands, in percentage.Heteroge: Landscape heterogeneity considering the Shannon index of land use (landscape diversity per ha).
DOI: 10.6084/m9.figshare.25035971.v1
title: FASTQ files from CRISPR screen

description: All experimental details are described in the paper:<b>CRISPR screen for protein inclusion formation uncovers a role for SRRD in the regulation of intermediate filament dynamics and aggresome assembly</b><br>
DOI: 10.6084/m9.figshare.28190399.v2
title: Data for 3D-printed perfused models of the penis for the study of penile physiology and for restoring erectile function in rabbits and pigs

description: The datasets generated during the study "3D-printed perfused models of the penis for the study of penile physiology and for restoring erectile function in rabbits and pigs".
DOI: 10.6084/m9.figshare.5931028.v1
title: Phenylephrine 10% mydriatic effect: comparison between self instillation of eye drop in open eyes and spray in closed eyes

description: ABSTRACT Objective: To compare the effectiveness of phenylephrine 10% applied by a spray onto the eye closed over drop instillation onto an open eye on patients who will perform ophthalmoscopy and assess the level of difficulty and technical adequacy of the administration methods. Methods: The study was a clinical trial, controlled, randomized and paired, performed in 2014, involving 100 eyes of 50 patients in the Polyclinic Ronaldo Gazolla - RJ, with no ocular or systemic diseases that compromised the pupillary dilation. Patients underwent 10% phenylephrine eye drop instillation onto one open eye and spray application onto the other eye, which was closed. Pupillary diameter was measured before application and 10, 20, 30 minutes after. The process of instillation or vaporization was observed for its technical correctness by one of the authors. A questionnaire was asked to the patient about the difficulty of both methods after topical administration. Results: The average mydriasis difference between the eye groups assessed at a given time was at most 0.3 mm, which was not clinically or statistically significant (ANOVA: F = 1.97 and p = 0.163609). However, over time, the difference between the average pupil diameter before application and after 30 minutes was 1.15 mm to vaporized eyes and to 1.58 mm in eyes instilled with drops (ANOVA: F = 129, 22 and p ≤ 0.0001). Sixty per cent of patients touched the tip of the eye drop bottle onto the eye, while 12% touched the tip of the vaporizer with their fingers (p &lt;0.000001). Seventy two percent (72%) considered the drops instillation easy or very easy, while 62% considered vaporization in a closed eye easy or very easy (p = 0.238). Conclusion: The instillation of drops phenylephrine 10% in open eyes and the vaporization onto closed eyes showed similar clinical efficacy. Vaporization was safer and a little more difficult than instillation, despite the patients being experienced for instilling drops and inexperienced to vaporize the medication in a closed eye.
DOI: 10.6084/m9.figshare.20746564.v1
title: Supplementary Material for: Surgical Repair of the Extrusion of the Body of a PAUL Implant for Glaucoma

description: The purpose of our article was to describe a simple but effective surgical technique performed on a patient with an extrusion of part of the body of a PAUL drainage implant for glaucoma. We present the case of a patient with refractory glaucoma and a history of multiple ocular interventions. A PAUL shunt was implanted and in the early postoperative period the patient presented extrusion of part of the implant body. An excessive scarring tissue at the lateral rectus muscle tendon hampered the placement of the lateral wing under the muscle; therefore, we decided to trim a part of it and suture the implant body to the sclera. The surgical technique that satisfactorily resolved the complication is described and shown in a video. This is the first time that such complication is described with the PAUL implant. We suggest that the intrinsic characteristics of the implant, mainly the dimensions, material, and thickness, made it possible for a potentially serious complication such as that described to be solved in a relatively simple and nontraumatic way for the eye.
DOI: 10.6084/m9.figshare.25249018.v1
title: Study 3

description: This is the raw data for the article: Comparing mock-suspects’ self-reported experience with a narrative-rich mock crime compared to a narrative-sparse mock crime in virtual reality
DOI: 10.6084/m9.figshare.25484329.v1
title: Car Emotion Image Dataset

description: The car emotional image dataset contains 25152 images of different brands and types of cars, each with product information.
DOI: 10.17632/f4whmwr3h8
title: Monitoring blue carbon ecosystem restoration using drones and object-based classification - Data

description: These data were used as part of wetland restoration monitoring research, using drone imagery and object-based image classification. 

Drone flights were conducted over a restoration site (Fish Fry Flat, Kooragang Island, Hunter River estuary, NSW, Australia) at seven time points over a 46-month period. The raw multispectral and elevation drone data were used along with training data to classify saltmarsh and other land cover types at a saltmarsh restoration site at seven temporal points over a 46-month period. The Google Earth Engine code for this classification is available here: https://code.earthengine.google.com/f2a4ea73b8542e1e7cb4ca04ef9b8bf4.

This Mendeley repository includes the classified images produced in Google Earth Engine and other associated files used to analyse the classified images in RStudio. The change tiffs were generated in QGIS by subtracting the classified images from one another. The accuracy data ("training_validation_2_alldata.xlsx") are a summary of the confusion matrix data produced in Google Earth Engine, and the variable importance data ("variable_importance_allvars.xlsx") were exported from column charts of variable importance in Google Earth Engine. The growth/loss data ("growth_loss.xlsx") refer to growth, loss and species transitions between the two major saltmarsh species at our site (see which code refers to which growth/loss transition in the "growth_loss" script on GitHub), and were generated in QGIS by reclassifying and summing classified images. The "classmetrics" and "landmetrics" csvs were produced in the "patch_metrics" R script and allow users to skip midway into the patch analysis, because the initial patch analysis takes hours to run. 

The data can be analysed in RStudio using the code in this GitHub repository: https://github.com/dlanceman/kooragang. The data can be used to investigate temporal and spatial changes in saltmarsh species cover over time and relationships with elevation. They can also be used to look at the importance of different variables for classification and for exploring classification accuracy between classes and over time.
DOI: 10.6084/m9.figshare.14473776.v2
title: Comprehensive evolution analysis with genome scale metabolic models reveals diverse mechanisms in metabolic innovations across 332 yeast species

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning for yeast species without experimental dataSingle species GEMs in various formatsGeneMining KO query files for tblastn seach for substrate usage and complex IBranch site result for the trait of Crabtree effect and heat-toleranceSite model result for positively selected site analysis across 332 yeast species plus 11 fungal species
DOI: 10.6084/m9.figshare.3521714.v1
title: Full Archive

description: Full Archive
DOI: 10.17632/2t5c59rrrf
title: FLAME: A library of atomistic modeling environments

description: FLAME is a software package to perform a wide range of atomistic simulations for exploring the potential energy surfaces (PES) of complex condensed matter systems. The available methods include molecular dynamics simulations to sample free energy landscapes, saddle point searches to identify transition states, and gradient relaxations to find dynamically stable geometries. In addition to such common tasks, FLAME implements a structure prediction algorithm based on the minima hopping method (MHM) to identify the ground state structure of any system given solely the chemical composition, and a framework to train a neural network potential to reproduce the PES from ab initio calculations. The combination of neural network potentials with the MHM in FLAME allows a highly efficient and reliable identification of the ground state as well as metastable structures of molecules and crystals, as well as of nano structures, including surfaces, interfaces, and two-dimensional materials. In this manuscript, we provide detailed descriptions of the methods implemented in the FLAME code and its capabilities, together with several illustrative examples.
DOI: 10.17632/wkjdmrmrg4
title: Dataset on Online Impulsive buying behaviour of E-paylater user and non E-paylater user

description: The provided dataset sheds light on the online impulsive buying behavior triggered by the e-paylater payment alternative. It includes two files, one of which is a codebook in MS Excel, containing raw data that showcases respondent characteristics such as gender, age, educational background, job status, and more. This file also encompasses all research data, complete with question labels. The second file is a CSV file that contains filtered data suitable for testing purposes. Additionally, the dataset includes a third file that contains the survey questionnaire, attached as a complementary document for reference.

This dataset provided here is a valuable resource for conducting various analyses on e-paylater usage and consumer decision-making, especially in Indonesia. With its diverse data and demographic attributes, this dataset allows for comprehensive as well as segmented analyses and tests based on consumer groups categorized by age, gender, education level, and other relevant parameters. It offers a broad range of potential applications for researchers and analysts to explore and gain insights into consumer behavior and preferences.
DOI: 10.6084/m9.figshare.27634032.v4
title: Source data for 'Navigating condensate microenvironment to enhance small molecule drug targeting'

description: This repository contains source data for Figures 1-6 and Extended Data Figures.
DOI: 10.6084/m9.figshare.28552430.v2
title: Critical thinking data

description: This study develops a Critical Thinking-Real World Practice (CT-RWP) learning framework, integrating Challenge-Based Learning (CBL) and Values and Knowledge Education (VaKE) to enhance Critical Thinking skills (CTs). Traditional teaching models often fail to connect learning with real-world contexts, limiting their effectiveness in fostering CTs. CBL emphasizes practical challenges but lacks CT-focused instructional strategies, while VaKE promotes reflective decision-making but overlooks real-world applications. The CT-RWP framework combines the strengths of both models to address these gaps. Using a mixed-methods approach, nine experts evaluated the content and construct validity of the CT-RWP framework through interviews and questionnaires. Additionally, 111 first-year students from a university in eastern China were divided into an experimental group (n=51), which received the CT-RWP framework intervention, and a control group (n=60) following a traditional curriculum. CTs were assessed using a standardized CT scale. The results demonstrate strong alignment with key CT skills such as critical analysis, open-mindedness, and application. Meanwhile, the pilot study shows that the experimental group had significantly higher post-test CT scores compared to the control group, indicating the framework's practical effectiveness. These findings suggest the CT-RWP framework has significant potential for enhancing CT teaching practices.