cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/b8bncjb5hg.2
title: Sterols as dietary markers for Drosophila melanogaster

description: During cold acclimation fruit flies switch their feeding from yeast to plant food, however there are no robust markers to monitor it in the wild. Drosophila melanogaster is a sterol auxotroph and relies on dietary sterols to produce lipid membranes, lipoproteins and molting hormones. We employed shotgun lipidomics to quantify eight major food sterols in total lipid extracts of heads, female and male genital tracts of adult flies. We found that their sterol composition is dynamic and reflective of fly diet in an organ-specific manner. Season-dependent changes observed in the organs of wild-living flies suggested that the molar ratio between yeast (ergosterol, zymosterol) and plant (sitosterol, stigmasterol) sterols is a quantifiable, generic and unequivocal marker of their feeding behavior, including cold acclimation. It provides technically simpler and more specific readout compared to the full lipidome analysis and is suitable for ecological and environmental population-based studies.
DOI: 10.17632/k7nvtgn2x6.1
title: Data for glomeruli characterization in histopathological images

description: The data presented hereis part of the whole slide imaging (WSI) datasets generated in European project AIDPATH. This data is also related to the research paper entitle “Glomerulosclerosis Identification in Whole Slide Images using Semantic Segmentation”, published in Computer Methods and Programs in Biomedicine Journal (DOI: 10.1016/j.cmpb.2019.105273) . In that article, different methods based on deep learning for glomeruli segmentation and their classification into normal and sclerotic glomerulous are presented and discussed. These data will encourage research on artificial intelligence (AI) methods, create and compare fresh algorithms, and measure their usability in quantitative nephropathology. Parameters for data collection: Tissue samples were collected with a biopsy needle having an outer diameter between 100μm and 300μm. Afterwards, paraffin blocks were prepared using tissue sections of 4μm and stained using Periodic acid–Schiff (PAS). Then, images at 20x magnification were selected. Description of data collection: The tissue samples were scanned at 20x with a Leica Aperio ScanScope CS scanner. Data format: DATASET_A_DIB: Raw data, original images in SVS format. DATASET_B_DIB: Classified: Detected glomeruli to be used for classification in PNG format. The data is composed of two datasets: 1.) DATASET_A: Raw data with 31 whole slide images (WSI) in SVS format. The size of the WSI range between 21651x10498 pixels and 49799 x 32359 pixles acquired at 20x. The images contain different types of glomeruli that were detected using the algorithms explained at the following article [https://doi.org/10.1016/j.cmpb.2019.105273]. The detected glomeruli are provided in DATASET_B. 2.) DATASET_B: 2,340 images with a single glomerulous, 1,170 normal glomeruli and 1,170 sclerosed glomeruli. All of them are in PNG format. Value of the Data · These data can be used for benchmarking to encourage further research on AI methods applied to digital pathology in nephrology. · The additional value of this data is that it has been acquired and evaluated by expert pathologists from different European countries. · All researches in digital pathology can benefit from these data, to test classification algorithms. And particularly for glomeruli identification in nephrology studies. · This data can be used for further development and new experiments in glomeruli classification with more classes, like focal glomeruli besides normal and sclerotic glomeruli.
DOI: 10.17632/k7nvtgn2x6.2
title: Data for glomeruli characterization in histopathological images

description: The data presented hereis part of the whole slide imaging (WSI) datasets generated in European project AIDPATH. This data is also related to the research paper entitle “Glomerulosclerosis Identification in Whole Slide Images using Semantic Segmentation”, published in Computer Methods and Programs in Biomedicine Journal (DOI: 10.1016/j.cmpb.2019.105273) . In that article, different methods based on deep learning for glomeruli segmentation and their classification into normal and sclerotic glomerulous are presented and discussed. These data will encourage research on artificial intelligence (AI) methods, create and compare fresh algorithms, and measure their usability in quantitative nephropathology. Parameters for data collection: Tissue samples were collected with a biopsy needle having an outer diameter between 100μm and 300μm. Afterwards, paraffin blocks were prepared using tissue sections of 4μm and stained using Periodic acid–Schiff (PAS). Then, images at 20x magnification were selected. Description of data collection: The tissue samples were scanned at 20x with a Leica Aperio ScanScope CS scanner. Data format: DATASET_A_DIB: Raw data, original images in SVS format. DATASET_B_DIB: Classified: Detected glomeruli to be used for classification in PNG format. The data is composed of two datasets: 1.) DATASET_A: Raw data with 31 whole slide images (WSI) in SVS format. The size of the WSI range between 21651x10498 pixels and 49799 x 32359 pixles acquired at 20x. The images contain different types of glomeruli that were detected using the algorithms explained at the following article [https://doi.org/10.1016/j.cmpb.2019.105273]. The detected glomeruli are provided in DATASET_B. 2.) DATASET_B: 2,340 images with a single glomerulous, 1,170 normal glomeruli and 1,170 sclerosed glomeruli. All of them are in PNG format. Value of the Data · These data can be used for benchmarking to encourage further research on AI methods applied to digital pathology in nephrology. · The additional value of this data is that it has been acquired and evaluated by expert pathologists from different European countries. · All researches in digital pathology can benefit from these data, to test classification algorithms. And particularly for glomeruli identification in nephrology studies. · This data can be used for further development and new experiments in glomeruli classification with more classes, like focal glomeruli besides normal and sclerotic glomeruli.
DOI: 10.5066/p99n52q5
title: Lumped parameter models of groundwater age from the Columbia Plateau Aquifer, Vertical Flowpath Study Network

description: This data release documents two Microsoft Excel tables that contain data for understanding tracer concentrations and groundwater age in the Columbia Plateau aquifer system. Results for geochemical correction of carbon-14, and lumped parameter modeling of groundwater age for the sample network (VPFS, vertical flow path study) are described. Geochemical carbon-14 correction results (RFG) describe geochemical correction of carbon-14 in dissolved inorganic carbon (DIC) for groundwater age dating. Datasets includes measured water parameters and chemistry, model parameter inputs, and final corrected carbon-14 in DIC. Geochemical correction was completed using the revised Fontes and Granier model of Han and Plummer (2013). Mean age and age distribution results (TracerLPM) contain final models of groundwater age by calibration of lumped parameter models to tracer concentrations (Jurgens and others, 2012). Please see the processing steps below for additional details on the results presented in this table. Jurgens, B.C., Bohlke, J.K., and Eberts, S.M., 2012, TracerLPM (Version 1): An Excel workbook for interpreting groundwater age distributions from environmental tracer data: U.S. Geological Survey Techniques and Methods Report 4-F3, 60 p.
DOI: 10.17632/r3246rcz98.1
title: Data for: Factors Affecting Consumer Purchase Behavior Towards Online Clothing Products in Bangladesh

description: The data represents the research for the understanding of the points that create a positive connection between the consumers and the online fashion retailers in Bangladesh.
DOI: 10.17632/w8cg7xxbpd.1
title: ANSYS script and data

description: Finite element parametric model for free vibration behavior of 3D printed specimens (infill related)
DOI: 10.5258/soton/d0967
title: Dataset for: Characterization of Non-linearities through Mechanical Squashing in Levitated Optomechanic
DOI: 10.17037/data.00001341
title: Dataset for behaviour-microbiology studies of face washing techniques for trachoma control: a pilot study within the Stronger SAFE project

description: Stronger-SAFE is a five-year project funded by the Wellcome Trust that will increase our understanding of how trachoma is transmitted, leading to the development and testing of new, more effective interventions and treatment approaches The behaviour-microbiology studies sought to inform the target behaviour we should promote during our face washing intervention. In order to determine how best to promote face washing with soap to maximise interruption of Chlamydia trachomatis transmission, we assessed how effectively ocular and nasal discharge were removed from children's faces following washing with water or with water and soap. We also studied how long it took for ocular and nasal discharge to return to children's faces after washing. The dataset can be found here. The results of this pilot study can be found in our AJTMH paper (Czerniewska et al.) entitled "Comparison of face washing and face wiping methods for trachoma control: a pilot study".
DOI: 10.5066/p9h7fieo
title: Lumped parameter models of groundwater age and noble gas models of recharge conditions in support of Groundwater and Surface-Water Resources near Red Fleet Reservoir, Uintah County, Utah

description: This data release documents four Microsoft Excel tables; one contains data for understanding water ages, one contains noble gas model data, two that describe the data fields. Results described include environmental tracer concentrations (tritium, tritiogenic helium-3, choloroflourocarbons, and radiogenic helium-4), mean age and age distribution, noble gas concentrations, and groundwater recharge conditions. Mean age and age distribution results (LPM) contain final models of groundwater age by calibration of lumped parameter models to tracer concentrations (Jurgens and others, 2012). Please see the main manuscript for additional details on the results presented in this table. Noble gas model results (CEmodel) contain noble gas concentrations and closed-equilibrium model results. Please see the main manuscript for additional details on the results presented in this table. Jurgens, B.C., Bohlke, J.K., and Eberts, S.M., 2012, TracerLPM (Version 1): An Excel workbook for interpreting groundwater age distributions from environmental tracer data: U.S. Geological Survey Techniques and Methods Report 4-F3, 60 p., https://pubs.usgs.gov/tm/4-f3/.
DOI: 10.5281/zenodo.3644465
title: PDNET for protein distance prediction

description: Deep learning protein contacts and real-valued distances using PDNET
DOI: 10.5281/zenodo.3644466
title: PDNET for protein distance prediction

description: Deep learning protein contacts and real-valued distances using PDNET
DOI: 10.17632/nszt95sk4j.1
title: Data for: A systematic approach to quantitative Western blot analysis

description: Figures 5 and 6 have been shared for reviewers analysis.
DOI: 10.5281/zenodo.3641930
title: IODP Expedition 361 Natural gamma radiation

description: Natural gamma radiation (NGR) data in the ~0.1 to 3.0 MeV range were measured using eight custom-designed sodium iodide (thallium) [NaI(Tl)] detectors arranged along the core measurement axis at 20 cm intervals. The NGR system uses layers of passive shielding (lead) and active shielding (plastic scintillators and coincidence electronics) to reduce the cosmic-ray signal for low-count analysis of sediment core sections and to obtain the maximum signal-to-noise ratio. Data are reported on a total counts per second basis and the raw spectral files are available as compressed files for later analysis.
DOI: 10.5281/zenodo.3641931
title: IODP Expedition 361 Natural gamma radiation

description: Natural gamma radiation (NGR) data in the ~0.1 to 3.0 MeV range were measured using eight custom-designed sodium iodide (thallium) [NaI(Tl)] detectors arranged along the core measurement axis at 20 cm intervals. The NGR system uses layers of passive shielding (lead) and active shielding (plastic scintillators and coincidence electronics) to reduce the cosmic-ray signal for low-count analysis of sediment core sections and to obtain the maximum signal-to-noise ratio. Data are reported on a total counts per second basis and the raw spectral files are available as compressed files for later analysis.
DOI: 10.21227/7jan-t860
title: A DataSet of word sequences through MRI

description: A composite dataset with eight videos (totaling the pronunciation of seventeen words, with intervals, sagittal plane, and gray scale), for experiments in computer vision, video processing, and articulation investigation of the vocal tract.
DOI: 10.21227/bxhy-3650
title: A DataSet of word sequences through MRI

description: A composite dataset with eight videos (totaling the pronunciation of seventeen words, with intervals, sagittal plane, and gray scale), for experiments in computer vision, video processing, and articulation investigation of the vocal tract.
DOI: 10.5281/zenodo.3641924
title: IODP Expedition 361 Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.5281/zenodo.3641925
title: IODP Expedition 361 Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.5281/zenodo.3641926
title: IODP Expedition 361 Magnetic susceptibility (section half)

description: Magnetic susceptibility was measured on section halves on the Section Half Multisensor Logger (SHMSL) using a Bartington MS2 meter and either a MS2E or MS2K probe. Because all JRSO cores meet minimum size requirements for these two probes, MSPOINT data are corrected for volume and recorded in SI susceptibility units (x10<sup>-5</sup>).
DOI: 10.5281/zenodo.3641927
title: IODP Expedition 361 Magnetic susceptibility (section half)

description: Magnetic susceptibility was measured on section halves on the Section Half Multisensor Logger (SHMSL) using a Bartington MS2 meter and either a MS2E or MS2K probe. Because all JRSO cores meet minimum size requirements for these two probes, MSPOINT data are corrected for volume and recorded in SI susceptibility units (x10<sup>-5</sup>).
DOI: 10.5281/zenodo.3641934
title: IODP Expedition 361 Towed magnetometer

description: Seafloor magnetometer data were measured using a Marine Magnetics 1000 m SeaSpy towed magnetometer. Raw log and data files are presented by expedition.
DOI: 10.5281/zenodo.3645417
title: PDNET for protein distance prediction

description: Deep learning protein contacts and real-valued distances using PDNET
DOI: 10.5281/zenodo.3641935
title: IODP Expedition 361 Towed magnetometer

description: Seafloor magnetometer data were measured using a Marine Magnetics 1000 m SeaSpy towed magnetometer. Raw log and data files are presented by expedition.
DOI: 10.6073/pasta/1a0eba81a3648722b149cd59581014a0
title: PPH01 Phenology of Selected Plant Species at Konza Prairie

description: Twenty-nine selected species of grasses, forbs, and woody vegetation characteristic of a variety of habitats on Konza Prairie are used for phenological measurements. These species are observed weekly for the entire growing season and changes in their phenological states are recorded. The following phenological states are used for this survey: (1) initiation of growth, (2) first anthesis, (3) duration of anthesis, (4) fruits mature, (5) leaves more than 90% dry.
DOI: 10.25911/5e3b5380c7f5e
title: KirrKirr Story told by Tjawina Porter

description: This is a tjukurrpa Creation or Dreaming story about ‘Falcon Man’ (KirrKirr) the brown falcon.
description: This is a tjukurrpa Creation or Dreaming story about ‘Falcon Man’ (KirrKirr) the brown falcon. Filmed at Alice Springs, October 31 2012. (Archived at PARADISEC as WDVA1-TJU_12).
DOI: 10.25911/5e3b53fd88131
title: Minyma Kutungu Story told by Adrian Young

description: The Minyma Kutungu story is about a woman who travels around in the Creation Time creating the landscape.
description: The Minyma Kutungu story is about a woman who travels around in the Creation Time creating the landscape. Filmed at Tjukurla Community, October 14 2012. (Archived at PARADISEC as WDVA1-TJU_03).
DOI: 10.5281/zenodo.3645472
title: PDNET for protein distance prediction

description: Deep learning protein contacts and real-valued distances using PDNET
DOI: 10.17632/fnpzfw7rr8.1
title: Data for: Experimental and Modeling Investigations of Dropwise Condensation out of Convective Humid Air Flow

description: Additional figures for the current article
DOI: 10.5281/zenodo.3641941
title: IODP Expedition 361 P-wave velocity caliper (section/discrete)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.5281/zenodo.3641942
title: IODP Expedition 361 P-wave velocity caliper (section/discrete)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.5281/zenodo.3647642
title: NYC Open Data (Education) - D4 Evaluation Datasets

description: NYC Open Education data used for the evaluation of our data-driven domain discovery algorithm (D4). This repository contains 201 tables that were downloaded on 2016-11-22 from the Socrata Open Data API.
DOI: 10.5281/zenodo.3641961
title: IODP Expedition 361 Section summary

description: Report includes data for individual core sections: coring/drilling depths and recovery, database identifiers for the whole section and section halves, and number of samples taken from the section before and after splitting.
DOI: 10.5281/zenodo.3641962
title: IODP Expedition 361 Section summary

description: Report includes data for individual core sections: coring/drilling depths and recovery, database identifiers for the whole section and section halves, and number of samples taken from the section before and after splitting.
DOI: 10.5281/zenodo.3647641
title: NYC Open Data (Education) - D4 Evaluation Datasets

description: NYC Open Education data used for the evaluation of our data-driven domain discovery algorithm (D4). This repository contains 201 tables that were downloaded on 2016-11-22 from the Socrata Open Data API.
DOI: 10.5281/zenodo.3647647
title: NYC Open Data (Finance) - D4 Evaluation Datasets

description: NYC Open Finance data used for the evaluation of our data-driven domain discovery algorithm (D4). This repository contains 176 tables that were downloaded on 2016-11-22 from the Socrata Open Data API.
DOI: 10.5286/isis.e.rb1968028-3
title: Avalanche-like hybrid-improper ferroelectric transition in SrBi2Nb2O9

description: Improper-ferroelectrics (FE) are the backbone to development towards room-temperature multiferroics and carry the immense technological potential for next-generation data-storage and energy conversion. This class of FEs differs from displacive FEs (i.e. BaTiO3) as ferroelectricity is induced by anharmonic coupling between a (multiple) non-polar and a polar mode. With the proposed work, we aim to measure the condensation of non-polar and polar modes and confirm the theoretically proposed transition path. These polar and non-polar modes involve motions of heavy (Bi) and light (O) atoms, consequently, their energy scales are vastly different allowing for separation of dynamics on powder samples. Detailed T-dependent phonon measurements will also enable us to probe unusual T-dependence of polarization, which deviates strongly from square-root law because of the anharmonic coupling.
DOI: 10.25345/c5qh53
title: MassIVE MSV000084908 - GNPS - IBD 200 Human Fecal and Serum Samples 020520
title: IBD Severity extended study. Human fecal and serum samples. Data was acquired using a Thermo Q-Exactive and C18 RP-UHPLC.
DOI: 10.5281/zenodo.3641932
title: IODP Expedition 361 Bathymetry

description: Operational bathymetry data were measured using 3.5 kHz and/or 12 kHz echo sounders. Raw data are available in ODEC/CSV and SEGY formats, and depth-corrected bathymetry is presented in SEGY format. Data presented by expedition.
DOI: 10.5281/zenodo.3641933
title: IODP Expedition 361 Bathymetry

description: Operational bathymetry data were measured using 3.5 kHz and/or 12 kHz echo sounders. Raw data are available in ODEC/CSV and SEGY formats, and depth-corrected bathymetry is presented in SEGY format. Data presented by expedition.
DOI: 10.5281/zenodo.3641955
title: IODP Expedition 361 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.3641956
title: IODP Expedition 361 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.3641957
title: IODP Expedition 361 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.3641958
title: IODP Expedition 361 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.3645503
title: Exploring the Security Awareness of the Python and JavaScript Open Source Communities

description: Online appendix for "Exploring the Security Awareness of the Python and JavaScript Open Source Communities"
DOI: 10.5281/zenodo.3647646
title: NYC Open Data (Finance) - D4 Evaluation Datasets

description: NYC Open Finance data used for the evaluation of our data-driven domain discovery algorithm (D4). This repository contains 176 tables that were downloaded on 2016-11-22 from the Socrata Open Data API.
DOI: 10.17632/5vssx32pk2.1
title: Wilson and Jamieson 2019 - The effects of of urbanization on bee communities depends on floral resource availability and bee functional traits.

description: All data used for analysis in Wilson and Jamieson 2019.
DOI: 10.5281/zenodo.3645502
title: Exploring the Security Awareness of the Python and JavaScript Open Source Communities

description: Online appendix for "Exploring the Security Awareness of the Python and JavaScript Open Source Communities"