cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0397875
title: Data from: Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an Artichoke

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The perennial sunflower Helianthus tuberosus, known as Jerusalem Artichoke or Sunchoke, was cultivated in eastern North America before European contact. As such, it represents one of the few taxa that can support an independent origin of domestication in this region. Its tubers were adopted as a source of food and forage when the species was transferred to the Old World in the early 1600s, and are still used today. Despite the cultural and economic importance of this tuber crop species, its origin is debated. Competing hypotheses implicate the occurrence of polyploidization with or without hybridization, and list the annual sunflower H. annuus and five distantly related perennial sunflower species as potential parents. Here, we test these scenarios by skimming the genomes of diverse populations of Jerusalem Artichoke and its putative progenitors. We identify relationships among Helianthus taxa using complete plastomes (151 551 bp), partial mitochondrial genomes (196 853 bp) and 35S (8196 bp) and 5S (514 bp) ribosomal DNA. Our results refute the possibility that Jerusalem Artichoke is of H. annuus ancestry. We provide the first genetic evidence that this species originated recursively from perennial sunflowers of central-eastern North America via hybridization between tetraploid Hairy Sunflower and diploid Sawtooth Sunflower.
DOI: 10.14288/1.0397879
title: Data from: Genomic prediction accuracies in space and time for height and wood density of Douglas-fir using exome capture as the genotyping platform

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Background Genomic selection (GS) can offer unprecedented gains, in terms of cost efficiency and generation turnover, to forest tree selective breeding; especially for late expressing and low heritability traits. Here, we used: 1) exome capture as a genotyping platform for 1372 Douglas-fir trees representing 37 full-sib families growing on three sites in British Columbia, Canada and 2) height growth and wood density (EBVs), and deregressed estimated breeding values (DEBVs) as phenotypes. Representing models with (EBVs) and without (DEBVs) pedigree structure. Ridge regression best linear unbiased predictor (RR-BLUP) and generalized ridge regression (GRR) were used to assess their predictive accuracies over space (within site, cross-sites, multi-site, and multi-site to single site) and time (age-age/ trait-trait). Results The RR-BLUP and GRR models produced similar predictive accuracies across the studied traits. Within-site GS prediction accuracies with models trained on EBVs were high (RR-BLUP: 0.79–0.91 and GRR: 0.80–0.91), and were generally similar to the multi-site (RR-BLUP: 0.83–0.91, GRR: 0.83–0.91) and multi-site to single-site predictive accuracies (RR-BLUP: 0.79–0.92, GRR: 0.79–0.92). Cross-site predictions were surprisingly high, with predictive accuracies within a similar range (RR-BLUP: 0.79–0.92, GRR: 0.78–0.91). Height at 12 years was deemed the earliest acceptable age at which accurate predictions can be made concerning future height (age-age) and wood density (trait-trait). Using DEBVs reduced the accuracies of all cross-validation procedures dramatically, indicating that the models were tracking pedigree (family means), rather than marker-QTL LD. Conclusions While GS models’ prediction accuracies were high, the main driving force was the pedigree tracking rather than LD. It is likely that many more markers are needed to increase the chance of capturing the LD between causal genes and markers.
DOI: 10.14288/1.0397880
title: Data from: When should we expect early bursts of trait evolution in comparative data? Predictions from an evolutionary food web model

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Conceptual models of adaptive radiation predict that competitive interactions among species will result in an early burst of speciation and trait evolution followed by a slowdown in diversification rates. Empirical studies often show early accumulation of lineages in phylogenetic trees, but usually fail to detect early bursts of phenotypic evolution. We use an evolutionary simulation model to assemble food webs through adaptive radiation, and examine patterns in the resulting phylogenetic trees and species' traits (body size and trophic position). We find that when foraging trade-offs result in food webs where all species occupy integer trophic levels, lineage diversity and trait disparity are concentrated early in the tree, consistent with the early burst model. In contrast, in food webs in which many omnivorous species feeding at multiple trophic levels, high levels of turnover of species' identities and traits tends to eliminate the early burst signal. These results suggest testable predictions about how the niche structure of ecological communities may be reflected by macroevolutionary patterns.
DOI: 10.14288/1.0397882
title: Data from: Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Differential gene flow, reductions in diversity following linked selection and/or features of the genome can structure patterns of genomic differentiation during the process of speciation. Possible sources of reproductive isolation are well studied between coastal and inland subspecies groups of Swainson's thrushes, with differences in seasonal migratory behaviour likely playing a key role in reducing hybrid fitness. We assembled and annotated a draft reference genome for this species and generated whole-genome shotgun sequence data for populations adjacent to the hybrid zone between these groups. We documented substantial genomewide heterogeneity in relative estimates of genetic differentiation between the groups. Within population diversity was lower in areas of high relative differentiation, supporting a role for selective sweeps in generating this pattern. Absolute genetic differentiation was reduced in these areas, further suggesting that recurrent selective sweeps in the ancestral population and/or between divergent populations following secondary contact likely occurred. Relative genetic differentiation was also higher near centromeres and on the Z chromosome, suggesting that features of the genome also contribute to genomewide heterogeneity. Genes linked to migratory traits were concentrated in islands of differentiation, supporting previous suggestions that seasonal migration is under divergent selection between Swainson's thrushes. Differences in migratory behaviour likely play a central role in the speciation of many taxa; we developed the infrastructure here to permit future investigations into the role several candidate genes play in reducing gene flow between not only Swainson's thrushes but other species as well.
DOI: 10.6084/m9.figshare.29040866
title: Data in the paper "Enhancing Vulnerability Repair through the Extraction and Matching of Repair Patterns"

description: This is the data in the paper "Enhancing Vulnerability Repair through the Extraction and Matching of Repair Patterns"
DOI: 10.15468/dl.ap3p53
title: Occurrence Download

description: A dataset containing 760491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is one of (March, July, August, September)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 760491 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004423-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ra2vw
title: Occurrence Download

description: A dataset containing 30113 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((116.667 -3.918596, 119.5458 -3.918596, 119.5458 -0.9367197, 116.667 -0.9367197, 116.667 -3.918596))"
 ]
}

 The dataset includes 30113 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004448-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.114480
title: Research Data supporting "Characterizing the ODN for a PON using longitudinal power monitoring and simplified coherent receivers"

description: The dataset provides the data supporting the research project of longitudinal power monitoring for characterising the ODN in PONs using simplified coherent receivers. The data includes the power profiles estimated for both single-loss and multiple-loss events, the model selection data based on the Bayesian Information Criteria, the experimental power budget data, and the simulation results for the investigation of regularisation and signal-to-noise ratio. The power profiles data contains the Matlab simulation and experimental results obtained using the regularised linear least squares and the fitted ones with the piecewise linear fitting. The experimental data was collected in the setup of 60 GBd 16 QAM downstream transmission with a 60 km fibre link using the simplified coherent receiver.
DOI: 10.15468/dl.nnxtq6
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrmica americana Weber, 1939",
 "Country is Canada",
 {
 "not" : {
 "InstitutionCode" : [
 "is one of (iNaturalist)"
 ]
 }
 }
 ]
}

 The dataset includes 318 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004449-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxrtj7
title: Occurrence Download

description: A dataset containing 181153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jynx torquilla Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 181153 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004444-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jurm4m
title: Occurrence Download

description: A dataset containing 655671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spodoptera exigua (Hübner, 1808), Galeruca daurica (Joannis, 1865), Eupithecia alliaria Staudinger, 1870, Blastobasis ochromorpha Meyrick, 1925, Aglossa caprealis (Hübner), Doloessa viridis Zeller, 1848, Lacertinella australis (Remes Lenicov & Rossi Batiz, 2011), Saccharosydne subandina Remes Lenicov & Rossi Batiz, 2010, Tapajosa rubromarginata (Signoret, 1855), Lilioceris merdigera (Linnaeus, 1758), Cadra figulilella (Gregson, 1871), Araecerus fasciculatus (C.DeGeer, 1775), Scirtothrips dorsalis Hood, 1919, Korscheltellus lupulina (Linnaeus, 1758), Embellisia allii E.G.Simmons, Pelecanoides georgicus Murphy & Harper, 1916, Pygoscelis papua (J.R.Forster, 1781), Pseudosagitta gazellae (Ritter-Záhony, 1909), Pelecanoides urinatrix (Gmelin, 1789), Procellaria aequinoctialis Linnaeus, 1758, Solidosagitta marri (David, 1956), Gymnoscopelus nicholsi (Gilbert, 1911), Eukrohnia hamata (Möbius, 1875), Electrona antarctica (Günther, 1878), Gymnoscopelus braueri (Lönnberg, 1905), Champsocephalus gunnari Lönnberg, 1905, Protomyctophum bolini (Fraser-Brunner, 1949), Hydraecia nordstroemi Horke, 1952, Thorybes pylades (Scudder, 1870), Bombus vancouverensis Cresson, 1879, Bombus rufocinctus Cresson, 1863, Eumenes fraternus Say, 1824, Zethus spinipes Say, 1837, Euodynerus foraminatus (de Saussure, 1853), Euchloe ausonides (Lucas, 1852), Andrena prunorum Cockerell, 1896, Bombus sitkensis Nylander, 1848, Bombus hypnorum (Linnaeus, 1758), Megachile melanophaea Smith, 1853, Halticoptera circulus (Walker, 1833), Eumenes consobrinus de Saussure, 1856, Pyrausta rubricalis Hübner, 1796, Eumenes crucifera Prov., 1888, Hedriodiscus binotatus (Loew, 1866), Euodynerus pratensis (de Saussure, 1870), Suastus gremius (Fabricius, 1798), Chioides catillus (Cramer, 1779), Cotinis mutabilis (Gory & Percheron, 1833), Ammophila procera Dahlbom, 1843, Zelus longipes (Linnaeus, 1767))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 655671 records from 1311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004431-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb5tr8
title: Occurrence Download

description: A dataset containing 184770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.7_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 184770 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012113-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwqztd
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Database of North American beaver (Castor canadensis Kuhl, 1820) in Russia",
 "OccurrenceStatus is Present",
 "TaxonKey is Castor canadensis Kuhl, 1820"
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012123-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajhwy4
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Namibia",
 "Geometry POLYGON((14.15 -21.42,14.9 -21.42,14.9 -20.75,14.15 -20.75,14.15 -21.42))",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002564-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15119448
title: Surface Defects and Crystal Growth of Apremilast Benzoic Acid Cocrystals

description: Original data for the publication: https://doi.org/10.1021/acs.oprd.4c00480
DOI: 10.5281/zenodo.15119449
title: Surface Defects and Crystal Growth of Apremilast Benzoic Acid Cocrystals

description: Original data for the publication: https://doi.org/10.1021/acs.oprd.4c00480
DOI: 10.17632/3brcsp737s
title: Table_func_KEGG_L3

description: Functional gene data of different forest types.
DOI: 10.17632/3brcsp737s.1
title: Table_func_KEGG_L3

description: Functional gene data of different forest types.
DOI: 10.17632/9fvbc42mmc
title: Trends in Utilization of Telemedicine in Safety-Net Dermatology Clinics During 2022: Figure S1.

description: Figure S1. Percentage of Completed In-person and Virtual Visits from Safety-Net Dermatology Clinics. Percentage of completed in-person and virtual visits from safety-net dermatology clinics in the NYC Health and Hospitals System between 01/2022-11/2022. (BE: Bellevue, CI: Coney Island, EL: Elmhurst, HA: Harlem, JA: Jacobi, KI: Kings, LI: Lincoln, ME: Metropolitan, QU: Queens, WO: Woodhull, Derm: All Dermatology Departments Combined, Amb: All Ambulatory Care Departments Combined (excluding Dermatology). The numbers below the site names are the total telemedicine and total in-person visits performed.
DOI: 10.17632/9fvbc42mmc.1
title: Trends in Utilization of Telemedicine in Safety-Net Dermatology Clinics During 2022: Figure S1.

description: Figure S1. Percentage of Completed In-person and Virtual Visits from Safety-Net Dermatology Clinics. Percentage of completed in-person and virtual visits from safety-net dermatology clinics in the NYC Health and Hospitals System between 01/2022-11/2022. (BE: Bellevue, CI: Coney Island, EL: Elmhurst, HA: Harlem, JA: Jacobi, KI: Kings, LI: Lincoln, ME: Metropolitan, QU: Queens, WO: Woodhull, Derm: All Dermatology Departments Combined, Amb: All Ambulatory Care Departments Combined (excluding Dermatology). The numbers below the site names are the total telemedicine and total in-person visits performed.
DOI: 10.6084/m9.figshare.28881467
title: Physical and Biological Fate of Protozoan (Oo)cysts in Slow Sand Filtration: A Review

description: Data for literature review associated with: Physical and Biological Fate of Protozoan (Oo)cysts in Slow Sand Filtration: A Review
DOI: 10.6084/m9.figshare.28881467.v1
title: Physical and Biological Fate of Protozoan (Oo)cysts in Slow Sand Filtration: A Review

description: Data for literature review associated with: Physical and Biological Fate of Protozoan (Oo)cysts in Slow Sand Filtration: A Review
DOI: 10.3535/fcm-7n1-x6g
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kmm-2nx-s7z
title: †Stichoporina Stoliczka, 1862

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kcg-yh0-p39
title: Microporina Levinsen, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3f9-8he-0q2
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pn3-vh4-zwx
title: Vincularia Defrance, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d6b-fya-plm
title: †Ditaxiporina bifenestrata Cheetham, 1963

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yal-qx7-2m4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljv-hqb-f7e
title: Thalamoporella Hincks, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sh0-2vf-grd
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g00-5ll-9nw
title: Canda Lamouroux, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykw-3pl-wh6
title: Crisia fistulosa (Heller, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ppr-a0c-s4p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8z1-97y-116
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y3f-asj-ygg
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bpg-ebm-a8m
title: Sorex Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lh7-drl-4l6
title: †Tremogasterina Canu, 1911

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q2b-v5w-nrk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rra-zky-7at
title: Crisia Lamouroux, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0hm-e4z-r70
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s2q-6nm-z95
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2b0-mma-rch
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gfj-t6k-211
title: Schizomavella (Schizomavella) hastata (Hincks, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j24-fal-z0q
title: Celleporina caminata (Waters, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h74-yhg-a6k
title: †Cellaria elongata Canu, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jpp-n80-h9w
title: Metrarabdotos Canu, 1914

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/drp-8s2-ccp
title: Cytherella compressa (Muenster, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/peb-znn-tkn
title: †Baryphyllia de Fromentel, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8zc-ty3-cfq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2at-9m0-p3d
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ggm-2n8-zp9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2er-6gb-qzq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r2h-0ne-yb9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bqbhu7
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Rwanda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023698-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dc6-8rq-9mk
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/laf-jb2-anb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nqd-chf-ejq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7z1-sk0-epy
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tqg-h4r-vyv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eew-n28-me2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qy8-q0p-ech
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9tw-chb-7ax
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5519/qd.sny8lox1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2364 records)