cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7322357
title: observed_pred_prey_A.RDSData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains adjacency matrices of food webs from New Zealand streams. These matrices were modified from the originals as described in the manuscript text. Briefly, they were subset to only include predator-prey interactions, and the taxa were aggregated to avoid naming discrepancies between food webs. The original food webs can be found at: https://www.nceas.ucsb.edu/interactionweb/resources.html
DOI: 10.6084/m9.figshare.7322351
title: fish_invert_dw.RDSData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This file contains the data found in "Taxa_dry_weight_abundance.csv". However, it is saved as a .RDS file type. When loaded into R, it is already separated into a list format for easier use with the code associated with this publication.
DOI: 10.7284/120995
title: Meteorological Station data collected during research cruise RR1502 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322351.v2
title: fish_invert_dw.RDSData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This file contains the data found in "Taxa_dry_weight_abundance.csv". However, it is saved as a .RDS file type. When loaded into R, it is already separated into a list format for easier use with the code associated with this publication.
DOI: 10.6084/m9.figshare.7322357.v2
title: observed_pred_prey_A.RDSData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains adjacency matrices of food webs from New Zealand streams. These matrices were modified from the originals as described in the manuscript text. Briefly, they were subset to only include predator-prey interactions, and the taxa were aggregated to avoid naming discrepancies between food webs. The original food webs can be found at: https://www.nceas.ucsb.edu/interactionweb/resources.html
DOI: 10.6084/m9.figshare.7322351.v1
title: fish_invert_dw.RDS

description: This file contains the data found in "Taxa_dry_weight_abundance.csv". However, it is saved as a .RDS file type. When loaded into R, it is already separated into a list format for easier use with the code associated with this publication.
DOI: 10.6084/m9.figshare.7322357.v1
title: observed_pred_prey_A.RDS

description: This dataset contains adjacency matrices of food webs from New Zealand streams. These matrices were modified from the originals as described in the manuscript text. Briefly, they were subset to only include predator-prey interactions, and the taxa were aggregated to avoid naming discrepancies between food webs. The original food webs can be found at: https://www.nceas.ucsb.edu/interactionweb/resources.html
DOI: 10.7284/120998
title: Multibeam Echosounder data collected during research cruise RR1502 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322342
title: taxonomy.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This file contains the phylogenetic information for freshwater taxa in New Zealand streams. It is used in the analysis of Pomeranz et al. (In Press). Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. The "minimum.res.method" and "minimum.con.method" are specific to the "WebBuilder" analysis as discussed in Gray et al. 2015. Joining the dots: an automated method for constructing food webs from compendia of published interactions. Food webs. 5, 11-20.
DOI: 10.6084/m9.figshare.7322345
title: other_feeding_interactions.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains trophic interactions collected from the literature for New Zealand freshwater communities. Each row contains a single trophic interaction between a resource and consumer, along with their taxonomic data. Columns with a "res." prefix refer to the taxonomic information for resources. Columns with a "con." prefix refer to consumers. References for each trophic interaction can be found in the "source.id" column.
DOI: 10.7284/121003
title: Winch data collected during research cruise RR1502 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322342.v2
title: taxonomy.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This file contains the phylogenetic information for freshwater taxa in New Zealand streams. It is used in the analysis of Pomeranz et al. (In Press). Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. The "minimum.res.method" and "minimum.con.method" are specific to the "WebBuilder" analysis as discussed in Gray et al. 2015. Joining the dots: an automated method for constructing food webs from compendia of published interactions. Food webs. 5, 11-20.
DOI: 10.6084/m9.figshare.7322345.v1
title: other_feeding_interactions.csv

description: This dataset contains trophic interactions collected from the literature for New Zealand freshwater communities. Each row contains a single trophic interaction between a resource and consumer, along with their taxonomic data. Columns with a "res." prefix refer to the taxonomic information for resources. Columns with a "con." prefix refer to consumers. References for each trophic interaction can be found in the "source.id" column.
DOI: 10.6084/m9.figshare.7322345.v2
title: other_feeding_interactions.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains trophic interactions collected from the literature for New Zealand freshwater communities. Each row contains a single trophic interaction between a resource and consumer, along with their taxonomic data. Columns with a "res." prefix refer to the taxonomic information for resources. Columns with a "con." prefix refer to consumers. References for each trophic interaction can be found in the "source.id" column.
DOI: 10.7284/121007
title: Winch data collected during research cruise RR1502 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322336
title: Taxa_dry_weight_abundance.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains empirical estimates on mean dry weight and numerical densities for macroinvertebrates in New Zealand streams. the "dw" is the estimated dry weight in grams for a given taxa. The "no.m2" column is the estimated number of individuals per meter squared. The estimated dry weight and abundance for fish taxa were estimated as described in Pomeranz et al. (In press) Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution.<br>If using this data, please cite original publications: Thompson, R. M., & Townsend, C. R. (1999). The effect of seasonal variation on the community structure and food-web attributes of two streams: implications for food-web science. <i>Oikos</i>, <i>87</i>(1), 75–88. Thompson, R. M., & Townsend, C. R. (2004). Land‐use influences on New Zealand stream communities: Effects on species composition, functional organisation, and food‐web structure. <i>New Zealand Journal of Marine and Freshwater Research</i>, <i>38</i>(4), 595–608. doi:10.1080/00288330.2004.9517265
DOI: 10.6084/m9.figshare.7322342.v1
title: taxonomy.csv

description: This file contains the phylogenetic information for freshwater taxa in New Zealand streams. It is used in the analysis of Pomeranz et al. (In Press). Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. The "minimum.res.method" and "minimum.con.method" are specific to the "WebBuilder" analysis as discussed in Gray et al. 2015. Joining the dots: an automated method for constructing food webs from compendia of published interactions. Food webs. 5, 11-20.
DOI: 10.6084/m9.figshare.7322279
title: Field experiences in geosciences: A case study from a multidisciplinary geology and geography course

description: Multidisciplinary field investigations courses offer exciting alternatives to traditional learning. They offer a more holistic view of Earth and an opportunity for students to experience the relationships between all of the different elements instead of just one individual segment. We designed a multidisciplinary field investigations course for upper division students of the earth sciences. The course provides an opportunity for geology, environmental science, environmental studies, and geography students to collaborate on projects while learning about the interconnections between geology and geography as they shape unique landscapes. We use the field investigations courses that we have taught in the Greater Yellowstone region, Pacific Northwest, and Southwest United States as case studies to demonstrate the advantages of combining disciplines into a single course. We collected voluntary course evaluations from the student participants of these courses to evaluate the course and learn the benefits of field experiences in the geosciences. These data along with faculty experience and observation suggest that a holistic approach in undergraduate field courses broadens student experiences, enhances peer-based and collaborative learning, builds team-working skills, and fosters a curiosity about the natural environment.
DOI: 10.7284/117355
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1503 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322336.v2
title: Taxa_dry_weight_abundance.csvData for Pomeranz et al. Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution. Accepted

description: This dataset contains empirical estimates on mean dry weight and numerical densities for macroinvertebrates in New Zealand streams. the "dw" is the estimated dry weight in grams for a given taxa. The "no.m2" column is the estimated number of individuals per meter squared. The estimated dry weight and abundance for fish taxa were estimated as described in Pomeranz et al. (In press) Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution.<br>If using this data, please cite original publications: Thompson, R. M., & Townsend, C. R. (1999). The effect of seasonal variation on the community structure and food-web attributes of two streams: implications for food-web science. <i>Oikos</i>, <i>87</i>(1), 75–88. Thompson, R. M., & Townsend, C. R. (2004). Land‐use influences on New Zealand stream communities: Effects on species composition, functional organisation, and food‐web structure. <i>New Zealand Journal of Marine and Freshwater Research</i>, <i>38</i>(4), 595–608. doi:10.1080/00288330.2004.9517265
DOI: 10.6084/m9.figshare.7322279.v1
title: Field experiences in geosciences: A case study from a multidisciplinary geology and geography course

description: Multidisciplinary field investigations courses offer exciting alternatives to traditional learning. They offer a more holistic view of Earth and an opportunity for students to experience the relationships between all of the different elements instead of just one individual segment. We designed a multidisciplinary field investigations course for upper division students of the earth sciences. The course provides an opportunity for geology, environmental science, environmental studies, and geography students to collaborate on projects while learning about the interconnections between geology and geography as they shape unique landscapes. We use the field investigations courses that we have taught in the Greater Yellowstone region, Pacific Northwest, and Southwest United States as case studies to demonstrate the advantages of combining disciplines into a single course. We collected voluntary course evaluations from the student participants of these courses to evaluate the course and learn the benefits of field experiences in the geosciences. These data along with faculty experience and observation suggest that a holistic approach in undergraduate field courses broadens student experiences, enhances peer-based and collaborative learning, builds team-working skills, and fosters a curiosity about the natural environment.
DOI: 10.6084/m9.figshare.7322336.v1
title: Taxa_dry_weight_abundance.csv

description: This dataset contains empirical estimates on mean dry weight and numerical densities for macroinvertebrates in New Zealand streams. the "dw" is the estimated dry weight in grams for a given taxa. The "no.m2" column is the estimated number of individuals per meter squared. The estimated dry weight and abundance for fish taxa were estimated as described in Pomeranz et al. (In press) Inferring predator-prey interactions in food webs. Methods in Ecology and Evolution.<br>If using this data, please cite original publications: Thompson, R. M., & Townsend, C. R. (1999). The effect of seasonal variation on the community structure and food-web attributes of two streams: implications for food-web science. <i>Oikos</i>, <i>87</i>(1), 75–88. Thompson, R. M., & Townsend, C. R. (2004). Land‐use influences on New Zealand stream communities: Effects on species composition, functional organisation, and food‐web structure. <i>New Zealand Journal of Marine and Freshwater Research</i>, <i>38</i>(4), 595–608. doi:10.1080/00288330.2004.9517265
DOI: 10.7284/117363
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1503 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322258
title: Temporal trend of the suspended sediment transport of the Amazon River (1984–2016)

description: We discuss the claim that the Amazon River has been subjected to a noticeable increase in suspended sediment transport (SST) in response to both climate and land-use changes. To study this, both satellite imagery and <i>in situ</i> data were compiled to produce a 32-year time series (1984–2016) of suspended sediment concentration. Both parametric and nonparametric statistics were applied to examine the SST time trend. The results indicate that there has been no statistically significant increase in SST in the last 32 years, independent of the statistical approach. The results indicate that, over the last 32 years at the Óbidos station, in Brazil, a recurring pattern of increase and decrease in SST has occurred, rather than a unidirectional systematic trend. This further explains the increasing trend reported in the literature and indicates that short time series are not recommended for time trend analyses due to the large inter-annual variability.
DOI: 10.6084/m9.figshare.7322258.v1
title: Temporal trend of the suspended sediment transport of the Amazon River (1984–2016)

description: We discuss the claim that the Amazon River has been subjected to a noticeable increase in suspended sediment transport (SST) in response to both climate and land-use changes. To study this, both satellite imagery and <i>in situ</i> data were compiled to produce a 32-year time series (1984–2016) of suspended sediment concentration. Both parametric and nonparametric statistics were applied to examine the SST time trend. The results indicate that there has been no statistically significant increase in SST in the last 32 years, independent of the statistical approach. The results indicate that, over the last 32 years at the Óbidos station, in Brazil, a recurring pattern of increase and decrease in SST has occurred, rather than a unidirectional systematic trend. This further explains the increasing trend reported in the literature and indicates that short time series are not recommended for time trend analyses due to the large inter-annual variability.
DOI: 10.6084/m9.figshare.7322252
title: GuacaMol All SMILES

description: The full dataset for the GuacaMol de novo design benchmarks.<br>This is a subset of molecules extracted from ChEMBL 24. For more information see https://www.ebi.ac.uk/chembl/<br>
DOI: 10.7284/117356
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1503 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322246
title: GuacaMol Test SMILES

description: Test partition of dataset for the GuacaMol de novo design benchmarks.<br>This is a subset of molecules extracted from ChEMBL 24. For more information see https://www.ebi.ac.uk/chembl/<br>
DOI: 10.6084/m9.figshare.7322252.v1
title: GuacaMol All SMILES

description: The full dataset for the GuacaMol de novo design benchmarks.
DOI: 10.7284/117358
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1503 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322243
title: GuacaMol Validation SMILES

description: Validation partition of dataset for the GuacaMol de novo design benchmarks.<br>This is a subset of molecules extracted from ChEMBL 24. For more information see https://www.ebi.ac.uk/chembl/<br>
DOI: 10.7284/122627
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1503 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322246.v1
title: GuacaMol Test SMILES

description: Test partition of dataset for the GuacaMol de novo design benchmarks.
DOI: 10.6084/m9.figshare.7322234
title: Dark Energy & Dark Matter

description: The derivation of a formula for calculating dark energy is described in this article. The result is tested on the basis of the available data from the Max Planck Institute for Radio Astronomy. Further formulas are deducted. The dark matter of the cosmos is calculated. A balance sheet is drawn up. Conclusions are drawn.<br>
DOI: 10.6084/m9.figshare.7322243.v1
title: GuacaMol Validation SMILES

description: Validation partition of dataset for the GuacaMol de novo design benchmarks.
DOI: 10.7284/117361
title: Gyrocompass data collected during research cruise RR1503 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117354
title: Meteorological Station data collected during research cruise RR1503 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322243.v2
title: GuacaMol Validation SMILES

description: Validation partition of dataset for the GuacaMol de novo design benchmarks.
DOI: 10.6084/m9.figshare.7322228
title: GuacaMol Training SMILES

description: Training partition of dataset for the GuacaMol de novo design benchmarks.<br><br>This is a subset of molecules extracted from ChEMBL 24. For more information see https://www.ebi.ac.uk/chembl/<br>
DOI: 10.7284/117357
title: Multibeam Echosounder data collected during research cruise RR1503 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322228.v1
title: GuacaMol Training SMILES

description: Training partition of dataset for the GuacaMol de novo design benchmarks.<br>
DOI: 10.6084/m9.figshare.7322165
title: Micro computed tomography of P. spumarius and G. atropunctata

description: This record reports µCT Images mentioned in the paper "Fluid dynamics in the foregut of xylem-sap feeding insects: a comparative study of two <i>Xylella fastidiosa </i>vectors", limited to the head of the two insects. In the section materials and method of the paper are available the description of the sample acquisition and preparation and of the images acquisition . In particular, a SkyScan1272 was used at the MicroPhotonics facility (Micro Photonics Inc. Allentown, PA). The beam energy was set to 50KV in a current source of 200µA. The image pixel size resolution was 1.999974µm and pictures were captured over a global 360°rotation sampled at steps of 0.1°. The record is composed of archive files: <i>1) </i><i>BGSS_HEAD.zip</i> contains 965 µCT Images of the blue green sharpshooter (<i>G. atropunctata</i>), numbered from the basis of the head (<i>bgss_2um__rec_tra_voi__voi_00002060.bmp</i>) up to the top of the head (<i>bgss_2um__rec_tra_voi__voi_00003024.bmp</i>) <i>2) </i><i>PS_HEAD.zip</i> contains 1068 µCT Images of the meadow spittlebug (<i>P. spumarius</i>), numbered from the basis of the head (<i>ps_2um__rec_voi__voi__Tra_Tra00002133.jpg</i>) up to the top of the head (<i>ps_2um__rec_voi__voi__Tra_Tra00003201.jpg</i>).
DOI: 10.7284/117360
title: Winch data collected during research cruise RR1503 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117364
title: Winch data collected during research cruise RR1503 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7322042
title: Gough et al. data_Figs_2_&_3

description: Canopy trait, tree species diversity, and aboveground wood net primary production data for 10 National Ecological Observatory Network temperate forest sites.
DOI: 10.7284/117366
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1504 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition