cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7530501
title: Data associated with "Developing a standardized but extendable framework to increase the findability of infectious disease datasets"

description: <strong>Data associated with "Developing a standardized but extendable framework to increase the findability of infectious disease datasets"</strong> Includes: NIAID Dataset schema NIAID ComputationalTool schema Crosswalk between NIAID schemas and common schemas Survey of Schema.org-compliant repositories <br> The open access movement and scientific reproducibility concerns have led the biomedical research community to embrace efforts to make scientific datasets openly accessible. While many datasets are now available, there are still challenges in ensuring that they are Findable, Accessible, Interoperable, and Reusable (FAIR). To improve the FAIRness of datasets, we evaluated dataset repositories for compliance with Schema.org standards – a collection of standards developed to increase metadata searchability across the internet. Adoption of the Schema.org Dataset standard was highly variable in biomedical research datasets, and the standard omitted many desirable metadata fields. We customized the Schema.org Dataset standard to catalog datasets collected across a Systems Biology research consortium consisting of 15 Centers. We developed a reusable process for creating a schema which is interoperable with other standards, but still extendable and customizable to a particular context. Here, we describe our process along with the associated gains in FAIRness, and discuss ongoing challenges with dataset discoverability – the first step to ensure that the vast amount of open data published by the research community is reused to its maximum value.
description: This work was supported in part by the National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH) grants U01 AI124290 (Baylor: TS, QW), U01 AI124302 (Boston College: JB), U19 AI135995 (Scripps Research: MC, LDH, GT, AIS, CW, JX, XZ), U19 AI135964 (Northwestern: MK, LVR, JS), U19AI135972 (Sanford Burnham Prebys: LP); National Center for Advancing Translational Sciences NIH grant U24 TR002306 (Scripps Research: MC, LDH, GT, AIS, CW, JX, XZ); and National Institute of General Medical Sciences grant R01 GM083924 (Scripps Research: MC, GT, AIS, CW, JX, XZ). We acknowledge the NIAID/DMID Systems Biology Consortium for Infectious Diseases Data Dissemination Working Group for developing the NIAID schemas, registering center-created datasets and computational tools, and providing critical feedback on the manuscript. We thank Reed Shabman for his leadership within the Data Dissemination Working Group, coordinating with centers to register datasets and tools, and helpful comments and careful revisions of the paper. We additionally thank Liliana Brown for the support of the Program this paper originated from.
DOI: 10.5281/zenodo.7530407
title: ROOSTER underlying dataset

description: ROOSTER is a software package to integrate both labeling and prediction in a single place. It has single user-friendly graphic user interface (GUI) that allow people apply deep learning to reduce the laborious labeling work. The use case data and raw images related to the ROOSTER were upload here.
DOI: 10.5281/zenodo.7530406
title: ROOSTER underlying dataset

description: ROOSTER is a software package to integrate both labeling and prediction in a single place. It has single user-friendly graphic user interface (GUI) that allow people apply deep learning to reduce the laborious labeling work. The use case data and raw images related to the ROOSTER were upload here.
DOI: 10.5281/zenodo.7530443
title: ROOSTER underlying dataset

description: ROOSTER is a software package to integrate both labeling and prediction in a single place. It has single user-friendly graphic user interface (GUI) that allow people apply deep learning to reduce the laborious labeling work. The use case data and raw images related to the ROOSTER were upload here.
DOI: 10.5281/zenodo.7530460
title: ROOSTER underlying dataset

description: ROOSTER is a software package to integrate both labeling and prediction in a single place. It has single user-friendly graphic user interface (GUI) that allow people apply deep learning to reduce the laborious labeling work. The use case data and raw images related to the ROOSTER were upload here.
DOI: 10.5517/ccdc.csd.cc25cnw3
title: CCDC 2007215: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cnx4
title: CCDC 2007216: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cny5
title: CCDC 2007217: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cnz6
title: CCDC 2007218: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp08
title: CCDC 2007219: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp19
title: CCDC 2007220: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp2b
title: CCDC 2007221: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp3c
title: CCDC 2007222: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp4d
title: CCDC 2007223: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp5f
title: CCDC 2007224: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp6g
title: CCDC 2007225: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp7h
title: CCDC 2007226: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp8j
title: CCDC 2007227: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cp9k
title: CCDC 2007228: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpbl
title: CCDC 2007229: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpcm
title: CCDC 2007230: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpdn
title: CCDC 2007231: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpfp
title: CCDC 2007232: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpgq
title: CCDC 2007233: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cphr
title: CCDC 2007234: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpjs
title: CCDC 2007235: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpkt
title: CCDC 2007236: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cplv
title: CCDC 2007237: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpmw
title: CCDC 2007238: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpnx
title: CCDC 2007239: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cppy
title: CCDC 2007240: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpqz
title: CCDC 2007241: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cpr0
title: CCDC 2007242: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25cps1
title: CCDC 2007243: Experimental Crystal Structure Determination

description: Related Article: W.F. Sanjuan-Szklarz, M. Woińska, S. Domagała, P.M. Dominiak, S. Grabowsky, D. Jayatilaka, M. Gutmann, K. Woźniak|2020|IUCrJ|7|920|doi:10.1107/S2052252520010441
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.