cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mqdmrz
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jordania zonope Starks, 1895",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 472 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041234-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3713947_d1.v1
title: Additional file 1: Table S1. of Root morphogenic pathways in Eucalyptus grandis are modified by the activity of protein arginine methyltransferases

description: Listing of genes exhibiting significant differential expression levels in roots treated with DMNS as opposed to control treated roots. Genes were considered to be significantly regulated when fold change in gene expression was ≥ 5-fold, p ≤ 0.05. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3713947_d1
title: Additional file 1: Table S1. of Root morphogenic pathways in Eucalyptus grandis are modified by the activity of protein arginine methyltransferases

description: Listing of genes exhibiting significant differential expression levels in roots treated with DMNS as opposed to control treated roots. Genes were considered to be significantly regulated when fold change in gene expression was ≥ 5-fold, p ≤ 0.05. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3799399_d7.v1
title: Additional file 7: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

description: Templates used for threading. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3799399_d8.v1
title: Additional file 8: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

description: Sequence-structure comparison between the amino acid sequence of AtPAE8 and a human palmitoleoyl-protein carboxylesterase (4UYU_A) threaded with FUGUE [75]. The catalytic triad in 4UYU is shown in dark red; other important amino acid residues involved in 4UYU activity are depicted in light red; amino acids involved in the substrate binding pocket are shown in blue. A cluster of 12 or 13 cysteine residues is in green [30]. The amino acid sequence of each protein does not contain the signal peptide. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3799399_d12
title: Additional file 16: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

description: Primer sequences designed from the cDNA sequence of AtPAE4, AtPAE8 and AtPAE10. (PDF 87 kb)
DOI: 10.6084/m9.figshare.c.3799399_d14
title: Additional file 2: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

description: The plant PAE genes used in this study. The 72 plant PAEs were selected from the 611 putative PAEs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3799399_d15
title: Additional file 4: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

description: Features of putative Arabidopsis and rice PAEs. The name, locus, accession number, length, MW, and pI are given. (PDF 57.7Â kb)
DOI: 10.6084/m9.figshare.c.3800149_d2.v1
title: MOESM2 of Microtiter plate cultivation of oleaginous fungi and monitoring of lipogenesis by high-throughput FTIR spectroscopy

description: Additional file 2: Table S5. HTS-FTIR spectra of biomass.
DOI: 10.6084/m9.figshare.c.3800149_d2
title: MOESM2 of Microtiter plate cultivation of oleaginous fungi and monitoring of lipogenesis by high-throughput FTIR spectroscopy

description: Additional file 2: Table S5. HTS-FTIR spectra of biomass.
DOI: 10.6084/m9.figshare.c.3803704_d6
title: Additional file 1: Table S1. of The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

description: Taxonomic, sequence name, and phylogenetic summary of sequences used in this study. (XLSX 82 kb)
DOI: 10.5258/soton/d3326
title: Dataset for doctoral thesis titled "The heritagisation of Thai luxury retail developments and the embodiment of the "Utopolis"

description: The data comprises interview transcripts from participants involved in the development of ICONSIAM and Central Ayutthaya, two luxury retail projects in Thailand that integrate Thai cultural heritage into their design. Each participant took part in a one-on-one interview, which lasted approximately one hour.

Additionally, the data includes focus group transcripts from participants who visit ICONSIAM and Central Ayutthaya as customers. One focus group was conducted for each luxury retail development, with six participants per group. Each focus group session also lasted approximately one hour. All transcripts for both the interviews and the focus groups are in XLSX file format.

Finally, the data includes images of design features at ICONSIAM and Central Ayutthaya, which were used and analyzed in this thesis. These images were captured by me with the approval of both retail developments, and no individuals were included in the photographs. All images are in JPEG format and labeled in accordance with the Figure numbers referenced in the thesis.
DOI: 10.6084/m9.figshare.c.3833437_d3
title: Additional file 3: Table S2. of Epidemiology of taeniosis/cysticercosis in Europe, a systematic review: Western Europe

description: List of references included in the review retrieved through online international databases. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3833437_d4
title: Additional file 4: Table S3. of Epidemiology of taeniosis/cysticercosis in Europe, a systematic review: Western Europe

description: List of references included in the review made available through local sources. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3833437_d4.v1
title: Additional file 4: Table S3. of Epidemiology of taeniosis/cysticercosis in Europe, a systematic review: Western Europe

description: List of references included in the review made available through local sources. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3833482_d2.v1
title: Additional file 2: Table S2. of Characterization of background noise in capture-based targeted sequencing data

description: Genes targeted for massively parallel sequencing. Table S3. Summary of sequencing metrics for 19 paired plasma and PBL DNA samples. Table S4. Acoustic shearing conditions. Table S5. Donor characteristics and KRAS variant allele frequency. (XLSX 19 kb)
DOI: 10.15468/dl.na4e6a
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali indica Lloyd, 1909",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041235-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3878266_d13
title: Additional file 9: of Regulatory network changes between cell lines and their tissues of origin

description: Significance of the in-degree difference of genes belonging to a specific pathway against genes not in the pathway using an unpaired t-test. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3894787_d2
title: MOESM2 of Climate variability and causes: from the perspective of the Tharaka people of eastern Kenya

description: Additional file 2. Household survey data.
DOI: 10.6084/m9.figshare.c.3894784_d2.v1
title: Additional file 2: of Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance

description: Supplementary Table1. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3894784_d2
title: Additional file 2: of Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance

description: Supplementary Table1. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3894763_d7.v1
title: Additional file 6: of Role of PCNA and RFC in promoting Mus81-complex activity

description: The individual data values for colony formation assay. (XLSX 22 kb)
DOI: 10.12770/3e50f1c4-c552-4f9b-bede-f49cd216e78d
title: Concentrations métalliques au sein des réseaux trophiques des marais de Tasdon (La Rochelle) et du Fier d'Ars (île de Ré)

description: Les mesures des concentrations en métaux (Hg, Cd, Pb, As...) ont été réalisées dans les espèces représentatrices des réseaux trophiques aquatiques. Ceci avant (automne 2019) et après (automne 2021) les travaux de reconnexion à la mer pour Tasdon. Ceci au niveau d'un pré salé (Bossys) et d'un vasais endigué (Lilleau des Niges) en juin 2021 au Fier d'Ars.
DOI: 10.6084/m9.figshare.c.3894763_d7
title: Additional file 6: of Role of PCNA and RFC in promoting Mus81-complex activity

description: The individual data values for colony formation assay. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3894763_d9.v1
title: Additional file 8: of Role of PCNA and RFC in promoting Mus81-complex activity

description: The individual data values for cell survival assay. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3894763_d9
title: Additional file 8: of Role of PCNA and RFC in promoting Mus81-complex activity

description: The individual data values for cell survival assay. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3904504_d15.v1
title: Additional file 6: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: hexA motif sequences. sto file for hexA motif sequences and their alignment. (STO 2 kb)
DOI: 10.6084/m9.figshare.c.3904546_d6
title: Additional file 6: Table S3. of Gene expression modules in primary breast cancers as risk factors for organotropic patterns of first metastatic spread: a case control study

description: Distribution of gene module scores for cases and controls in each case-control series, and estimated ORs using conditional logistic and logistic regression models. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3904555_d2.v1
title: Additional file 2: Table S2. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: All strain information. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3904555_d3.v1
title: Additional file 3:Table S3. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: Assemble results in each B. subtilis strain. Related to Fig. 3. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3904555_d2
title: Additional file 2: Table S2. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: All strain information. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3904504_d15
title: Additional file 6: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: hexA motif sequences. sto file for hexA motif sequences and their alignment. (STO 2 kb)
DOI: 10.6084/m9.figshare.c.3904555_d3
title: Additional file 3:Table S3. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: Assemble results in each B. subtilis strain. Related to Fig. 3. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3904504_d16.v1
title: Additional file 7: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: SART-1 motif sequences. sto file for SART-1 motif sequences and their alignment. (STO 2 kb)
DOI: 10.6084/m9.figshare.c.3904504_d17.v1
title: Additional file 8: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: AU-rich motif sequences. sto file for AU-rich motif sequences and their alignment. (STO 1 kb)
DOI: 10.6084/m9.figshare.c.3904504_d16
title: Additional file 7: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: SART-1 motif sequences. sto file for SART-1 motif sequences and their alignment. (STO 2 kb)
DOI: 10.6084/m9.figshare.c.3904504_d17
title: Additional file 8: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

description: AU-rich motif sequences. sto file for AU-rich motif sequences and their alignment. (STO 1 kb)
DOI: 10.6084/m9.figshare.c.3904555_d5.v1
title: Additional file 5: Table S4. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: eRP arrangement result data in other bacteria. Related to Figure S1. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3904555_d6.v1
title: Additional file 6: Table S5. of eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

description: eRP arrangement accuracy corresponding to the number of contigs. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3905821_d1
title: Additional file 1 of TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms

description: Validation taxa. Information on taxa used for evaluating the logistic regression model. (CSV 3 kb)
DOI: 10.15468/dl.3tmf2t
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali kerberti (Weber, 1913)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041237-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3912775_d6.v1
title: MOESM3 of Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

description: Additional file 3: Table S2. Variants identified in the 200 whole-genome sequences. This file provides details on all predicted and merged variants before applying validation approaches (in silico and experimental).
DOI: 10.6084/m9.figshare.c.3912775_d6
title: MOESM3 of Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

description: Additional file 3: Table S2. Variants identified in the 200 whole-genome sequences. This file provides details on all predicted and merged variants before applying validation approaches (in silico and experimental).
DOI: 10.15468/dl.k6p3ab
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-6.26547 36.69218,-6.23565 36.69218,-6.23565 36.73521,-6.26547 36.73521,-6.26547 36.69218))"
 ]
}

 The dataset includes 366 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041238-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3912832_d10.v1
title: Additional file 9: of RNA sequencing and proteomics approaches reveal novel deficits in the cortex of Mecp2-deficient mice, a model for Rett syndrome

description: List of 77 gene-protein matches (gene expression p
DOI: 10.6084/m9.figshare.c.3923398_d1.v1
title: Additional file 1: Table S1. of Validation and comparison of the molecular classifications of pancreatic carcinomas

description: List of pancreatic cancer data sets included (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3923398_d1
title: Additional file 1: Table S1. of Validation and comparison of the molecular classifications of pancreatic carcinomas

description: List of pancreatic cancer data sets included (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3923398_d2.v1
title: Additional file 2: Table S2. of Validation and comparison of the molecular classifications of pancreatic carcinomas

description: Clinicopathological characteristics of samples and correlations with molecular subtypes of the four classifications (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3923398_d3.v1
title: Additional file 3: Table S3. of Validation and comparison of the molecular classifications of pancreatic carcinomas

description: Gene overlapping between the four classifiers (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3923398_d2
title: Additional file 2: Table S2. of Validation and comparison of the molecular classifications of pancreatic carcinomas

description: Clinicopathological characteristics of samples and correlations with molecular subtypes of the four classifications (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3923389_d4.v1
title: Additional file 4: Table S4. of 
                     In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR

description: Identification of candidate LraD genes in Aspergillus niger. The data are organized according to the fold changes (highest to smallest). The fold change is the difference in expression between the wild-type on rhamnose over glucose. p-value &lt;0.05 (cells marked yellow). In red are indicated the three LraD candidates selected. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3929329_d1.v1
title: Additional file 1: of Frequency of canine nt230(del4) MDR1 mutation in prone pure breeds, their crosses and mongrels in Israel - insights from a worldwide comparative perspective.

description: List of all tested dogs, stratified by breed. For each sample ID, the breed and MDR1 genotyping status is indicated. (XLSX 60Â kb)
DOI: 10.6084/m9.figshare.c.3929329_d1
title: Additional file 1: of Frequency of canine nt230(del4) MDR1 mutation in prone pure breeds, their crosses and mongrels in Israel - insights from a worldwide comparative perspective.

description: List of all tested dogs, stratified by breed. For each sample ID, the breed and MDR1 genotyping status is indicated. (XLSX 60Â kb)
DOI: 10.6084/m9.figshare.c.3929464_d2
title: Additional file 2: of Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene

description: Links of differentially expressed genes identified by Cufflinks and EdgeR programs to BarleyCyc pathways. (XLSX 25Â kb)
DOI: 10.5281/zenodo.11102639
title: Statistical analyses and datasets for "Bumblebees collect a fixed sucrose intake per foraging bout rather than maximising collection volume"

description: ABSTRACT

Bumblebees face the intricate challenge of collecting substantial quantities of sugar from various floral resources. Yet, it remains unclear how individual bees optimise nectar collection. Here we investigated how Bombus terrestris workers collect sucrose solution on mixed-quality flower patches. Individual bees were observed foraging in a flight arena containing artificial flowers arranged in half-blue, half-yellow patches over three consecutive foraging bouts. Yellow flowers were highly rewarding (40% w/w sucrose solution) while blue flowers were either poorly rewarding (20% w/w sucrose solution) or not rewarding. In both conditions, the bees significantly increased their sucrose intake rate by increasing their foraging speed and accuracy over subsequent foraging bouts. However, they maintained a consistent total absolute quantity of sucrose intake across the three bouts. In the condition where both flower types were rewarding, the bees collected lower volumes but increased their consumption of high-concentration sucrose solution over time. These findings suggest that bumblebees forage with a specific target for carbohydrates rather than maximising volume collection.
DOI: 10.5281/zenodo.14524634
title: Supplementary material for: Interindividual variability in flower pickiness by foraging bumblebees

description: ABSTRACT

Pollinators navigate complex and heterogeneous "flower markets", where floral resources vary in quality, availability, and distribution. Bumblebees, as generalist foragers, visit numerous flowers during their foraging bouts. Yet, the factors influencing their flower choices and the notable individual differences in foraging behaviour among bees are still not well understood. We hypothesised that early foraging experiences influence bees' subsequent flower choices. To test this, we observed individual Bombus terrestris workers forage for three consecutive bouts in two artificial flower arrays. One array simulated a favourable environment with patches alternating high- and low-quality flowers (40% vs. 20% w/w sucrose solution), while the other array presented a more challenging environment with patches of high-quality flowers alongside unrewarded flowers (40% w/w sucrose solution vs. plain water). In both arrays, bees rapidly improved their foraging efficiency, increasing sucrose intake per unit time across bouts. In the favourable array, most bees became highly selective for high-quality flowers, while some continued visiting both flower types. Their degree of pickiness was influenced by early experiences: bees initially exposed to high-quality flowers became more selective, whereas those encountering low-quality flowers first were less selective in subsequent foraging. Despite differences in pickiness and array conditions, bees achieved comparable sucrose intake rates within three bouts. This study highlights the adaptability of bee foraging behaviour and emphasizes the role of early foraging experiences in driving individual differences.
DOI: 10.15468/dl.sf7rg2
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kathetostoma albigutta Bean, 1892",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 109 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041239-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3936799_d3.v1
title: MOESM3 of Determination of the residual efficacy of carbamate and organophosphate insecticides used for indoor residual spraying for malaria control in Ethiopia

description: Additional file 3. Excel spreadsheet containing individual chemical analysis results and bioassay data results.
DOI: 10.6084/m9.figshare.c.3936799_d3
title: MOESM3 of Determination of the residual efficacy of carbamate and organophosphate insecticides used for indoor residual spraying for malaria control in Ethiopia

description: Additional file 3. Excel spreadsheet containing individual chemical analysis results and bioassay data results.
DOI: 10.6084/m9.figshare.c.3936805_d1.v1
title: Additional file 1: of Elevated Aspergillus-specific antibody levels among HIV infected Ugandans with pulmonary tuberculosis

description: Study raw data. File contains a full set of raw data for the tests performed and baseline clinical and demographics characteristics. (XLSX 51Â kb)