cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hn3v2q
title: Occurrence Download

description: A dataset containing 2980 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China)",
 "TaxonKey is Dimocarpus longan"
 ]
}

 The dataset includes 2980 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000071-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3fuzb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000073-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10493769
title: Adiar 2.0.0-beta.3 : Experiment Data

description: In our experiments for Adiar v2.0-beta.3 (which introduces the levelized random access optimization), we have measured running time with different thresholds for using the new optimization:



pq : The new algorithm is turned off.

auto : The new algorithm is used if the width of the narrowest input (that is canonical) is smaller than 2 MiB.

ra : The new algorithm is always used.


These measurements were (like in previous measurements) done on the Grendel cluster on CSCAA (https://www.cscaa.dk/). These measurements were done two times - once in Summer 2023 and repeated (with similar results) in Fall the same year. The repetition of these experiments were to exclude the possibility the machines were in a bad state during the summer.



time.ods is a Libre Office Calc document with all of the data analysis.


The raw data is available in the following .zip files



time_summer23.zip and time_fall23.zip contain the measurements of the running time.

stats.zip contains separate runs where additional statistics are gathered (whose running time is not of interest and even potentially misleading)


To explain an odd slowdown in the above, we timed the Apply and the Reduce algorithms separately.



split.ods is a Libre Office Calc document with all of the data analysis from this second experiment.

split.zip contains the raw measurements from this second experiment.


The code for the benchmarks can be found at https://github.com/SSoelvsten/bdd-benchmark.
DOI: 10.5281/zenodo.10493770
title: Adiar 2.0.0-beta.3 : Experiment Data

description: In our experiments for Adiar v2.0-beta.3 (which introduces the levelized random access optimization), we have measured running time with different thresholds for using the new optimization:



pq : The new algorithm is turned off.

auto : The new algorithm is used if the width of the narrowest input (that is canonical) is smaller than 2 MiB.

ra : The new algorithm is always used.


These measurements were (like in previous measurements) done on the Grendel cluster on CSCAA (https://www.cscaa.dk/). These measurements were done two times - once in Summer 2023 and repeated (with similar results) in Fall the same year. The repetition of these experiments were to exclude the possibility the machines were in a bad state during the summer.



time.ods is a Libre Office Calc document with all of the data analysis.


The raw data is available in the following .zip files



time_summer23.zip and time_fall23.zip contain the measurements of the running time.

stats.zip contains separate runs where additional statistics are gathered (whose running time is not of interest and even potentially misleading)


To explain an odd slowdown in the above, we timed the Apply and the Reduce algorithms separately.



split.ods is a Libre Office Calc document with all of the data analysis from this second experiment.

split.zip contains the raw measurements from this second experiment.


The code for the benchmarks can be found at https://github.com/SSoelvsten/bdd-benchmark.
DOI: 10.15468/dl.jnt3wx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000075-250717081556266/datasets/export for details.
DOI: 10.25625/asrcph/djcnko
title: Metadata_Versioning_for_Persistent_Identifiers.pdf

description: :unav
DOI: 10.25625/asrcph
title: Metadata Versioning for Persistent Identifiers

description: This is the slide for the presentation of the paper named "Metadata Versioning for Persistent Identifiers". The presentation takes place in DH2025 conference in Lisbon, Portugal.
DOI: 10.15468/dl.parj9h
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Berberis amurensis"
 ]
}

 The dataset includes 198 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000072-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ud8xy
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000074-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e59ytc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Corvus brachyrhynchos)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000076-250717081556266/datasets/export for details.
DOI: 10.15468/dl.dcxhna
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Saudi Arabia",
 "Geometry POLYGON((43.62719 23.77973,47.87113 23.77973,47.87113 26.6836,43.62719 26.6836,43.62719 23.77973))",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "OccurrenceStatus is Present",
 "Year 2010-2025"
 ]
}

 The dataset includes 452 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000078-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vs652
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (June, July, August, September)",
 "TaxonKey is Hyphantria cunea",
 "Year 2019-2025"
 ]
}

 The dataset includes 391 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000079-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aa3s4p
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum distichum",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000077-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qmy56
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000081-250717081556266/datasets/export for details.
DOI: 10.15468/dl.hmdsx2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((37.37 55.55,37.85 55.55,37.85 55.9,37.37 55.9,37.37 55.55))",
 "OccurrenceStatus is Present",
 "TaxonKey is Triturus cristatus",
 "Year 2024-2025"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000080-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16023300
title: Dataset ISM Don and Nat

description: Dataset Untuk ISM
DOI: 10.5281/zenodo.16023301
title: Dataset ISM Don and Nat

description: Dataset Untuk ISM
DOI: 10.60882/cispa.29581451
title: “That’s my perspective from 30 years of doing this”: An Interview Study on Practices, Experiences, and Challenges of Updating Cryptographic Code

description: Keeping cryptographic code up to date and free of vulnerabilities is critical for overall software security. Updating algorithms (e.g., SHA-1 to SHA-512), key sizes (e.g., 2048 to 4096 bits), protocols (e.g., TLS 1.2 to 1.3), or transitioning to post-quantum cryptography (PQC) are common objectives of cryptographic updates. However, previous work and recent incidents illustrate developers’ struggle with cryptographic updates. The research illustrates that many software products include outdated and insecure cryptographic code and libraries. However, the security community lacks a solid understanding of cryptographic updates. We conducted an interview study with 21 experienced software developers to address this research gap. We wanted to learn about their experiences, approaches, challenges, and needs. Our participants updated for security and non-security reasons and generally perceived cryptographic updates as challenging and tedious. They lacked structured processes and faced significant challenges, such as insufficient cryptographic knowledge, legacy support hindering cryptographic transition, and a lack of helpful guidance. Participants desired the assistance of cryptographic experts and understandable resources for successful updates. We conclude with recommendations for developers, academia, standards organizations, and the upcoming transition to PQC.
DOI: 10.60882/cispa.29581451.v1
title: “That’s my perspective from 30 years of doing this”: An Interview Study on Practices, Experiences, and Challenges of Updating Cryptographic Code

description: Keeping cryptographic code up to date and free of vulnerabilities is critical for overall software security. Updating algorithms (e.g., SHA-1 to SHA-512), key sizes (e.g., 2048 to 4096 bits), protocols (e.g., TLS 1.2 to 1.3), or transitioning to post-quantum cryptography (PQC) are common objectives of cryptographic updates. However, previous work and recent incidents illustrate developers’ struggle with cryptographic updates. The research illustrates that many software products include outdated and insecure cryptographic code and libraries. However, the security community lacks a solid understanding of cryptographic updates. We conducted an interview study with 21 experienced software developers to address this research gap. We wanted to learn about their experiences, approaches, challenges, and needs. Our participants updated for security and non-security reasons and generally perceived cryptographic updates as challenging and tedious. They lacked structured processes and faced significant challenges, such as insufficient cryptographic knowledge, legacy support hindering cryptographic transition, and a lack of helpful guidance. Participants desired the assistance of cryptographic experts and understandable resources for successful updates. We conclude with recommendations for developers, academia, standards organizations, and the upcoming transition to PQC.
DOI: 10.15468/dl.rdcww7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000083-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38kxbp
title: Occurrence Download

description: A dataset containing 5399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Corvus brachyrhynchos)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 5399 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000084-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbrkwg
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum distichum",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000085-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99ted3
title: Occurrence Download

description: A dataset containing 67014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbascum thapsus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 67014 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000055-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc5dvc
title: Occurrence Download

description: A dataset containing 197020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elaphoglossum pygmaeum, Gunnera albocarpa, Chondroscaphe plicata, Austrostipa stipoides, Guettardella ternata, Erigeron uniflorus vichrenensis, Argyrotegium fordianum, Pseudadenia vizanensis, Pothos luzonensis, Guettardella affinis, Austrostipa platychaeta, Toxicodendron radicans verrucosum, Aldama bishopii, Argyranthemum adauctum jacobaeifolium, Aratitiyopea lopezii colombiana, Elymus dolichatherus, Salacia crassifolia, Guettardella attenuata, Rhododendron arboreum nilagiricum, Dopatrium lobelioides, Microdon capitatus, Elymus viridulus, Astragalus khassanovii, Crepis triasii, Bomarea andimarcana densifolia, Vestia foetida, Astragalus spatulatus, Hydriastele vitiensis, Guettardella tenuiflora, Austrostipa dongicola, Microdon dubius, Crepis pontana, Anarthria, Hieracium chondrillifolium delasoiei, Quechua glabrescens, Osmanthus yunnanensis, Elymus alienus, Vandopsis lissochiloides, Galium porrigens tenue, Juncus tingitanus, Trachelospermum lucidum, Angelica venenosa, Brickelliastrum nesomii, Astragalus edmonstonei, Eugenia cordata caribaea, Pyranthus lucens, Stemonurus perobtusus, Tephroseris integrifolia serpentini, Astragalus chaidamuensis, Hymenolepis crithmifolia, Austrostipa setacea, Odontites longiflorus, Linostoma decandrum, Hieracium sparsum peninsulare, Leptodesmia bojeriana, Centaurea aucheri szowitsii, Odontites hispidulus, Elymus fibrosus, Microchilus tridax, Microchilus paleaceus, Carduncellus pectinatus, Combretum hereroense grotei, Crepis canariensis, Rhombophyllum dyeri, Acronema hookeri, Astragalus serenoi, Cleisostoma williamsonii, Crepis jacquinii kerneri, Aristida laevis, Astragalus chamissonis, Acantholimon puberulum longiscapum, Guettardella tayabensis, Sphenostylis erecta, Astragalus plumbeus, Astragalus scaphoides, Cleisostoma bilamellatum, Spiraea splendens rosea, Elymus sajanensis, Calycobolus goodii, Cipuropsis singularis, Bechium rhodolepis, Capsicum cornutum, Astragalus cutleri, Leucadendron vinimontis, Glischrocaryon lucasii, Chrysolaena propinqua, Nephrolepis cordifolia, Arceuthobium sichuanense, Astragalus coluteoides, Astragalus brulloi, Chrysolaena campestris, Septulina glauca, Crepis paludosa, Microchilus caucanus, Weigela decora, Meistera ghatica, Comandra umbellata, Boehmeria virgata scabrella, Pytinicarpa comptonii, Hieracium bosniacum pelliculatum)",
 "Geometry POLYGON((-179.97229438 12.5928053297675, 179.99990562 12.5928053297675, 179.99990562 81.8519053297675, -179.97229438 81.8519053297675, -179.97229438 12.5928053297675))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 197020 records from 1020 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29589356
title: VNS for recurrent DRE

description: This is a draft of original data of VNS for post-operative recurrent epilepsy.
DOI: 10.6084/m9.figshare.29589356.v1
title: VNS for recurrent DRE

description: This is a draft of original data of VNS for post-operative recurrent epilepsy.
DOI: 10.6084/m9.figshare.29589383
title: Global coastal water clarity has increased due to human intervention (code)

description: This software package contains four Jupyter Notebooks used to analyze long-term trends in suspended particulate matter (SPM) in global continental coastal waters from 2000 to 2023. The analyses are based on remote sensing data and statistical modeling, and include both global-scale evaluations and country-level summaries.Included notebooks:SPM_Trend_and_Distance.ipynbComputes the annual trend of coastal SPM concentrations and the landward recession of high-turbidity zones.SPM_Trend_Contribution.ipynbQuantifies the contribution of five classified SPM trend categories (e.g., Further Clearing, Further Turbidifying) using machine learning outputs.SPM_EEZ_Top20_SPMgt10.ipynbVisualizes the top 20 countries with the highest proportion of coastal grid cells (0.05°) where SPM exceeds 10 mg/L within their Exclusive Economic Zones (EEZs).SPM_ClearTrend_ByCountry_Top20.ipynbDisplays the top 20 countries ranked by the proportion of coastal waters showing clearing trends (Class 1 + 2), with China and Taiwan aggregated.All output figures are generated in high-resolution PDF format. Input CSV files (listed in the README) should be placed in a ./data/ folder, and plots will be saved to ./output/.The code supports reproducible analysis for researchers studying sediment dynamics, coastal water clarity, and long-term environmental change.
DOI: 10.6084/m9.figshare.29589383.v1
title: Global coastal water clarity has increased due to human intervention (code)

description: This software package contains four Jupyter Notebooks used to analyze long-term trends in suspended particulate matter (SPM) in global continental coastal waters from 2000 to 2023. The analyses are based on remote sensing data and statistical modeling, and include both global-scale evaluations and country-level summaries.Included notebooks:SPM_Trend_and_Distance.ipynbComputes the annual trend of coastal SPM concentrations and the landward recession of high-turbidity zones.SPM_Trend_Contribution.ipynbQuantifies the contribution of five classified SPM trend categories (e.g., Further Clearing, Further Turbidifying) using machine learning outputs.SPM_EEZ_Top20_SPMgt10.ipynbVisualizes the top 20 countries with the highest proportion of coastal grid cells (0.05°) where SPM exceeds 10 mg/L within their Exclusive Economic Zones (EEZs).SPM_ClearTrend_ByCountry_Top20.ipynbDisplays the top 20 countries ranked by the proportion of coastal waters showing clearing trends (Class 1 + 2), with China and Taiwan aggregated.All output figures are generated in high-resolution PDF format. Input CSV files (listed in the README) should be placed in a ./data/ folder, and plots will be saved to ./output/.The code supports reproducible analysis for researchers studying sediment dynamics, coastal water clarity, and long-term environmental change.
DOI: 10.15468/dl.65ksad
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000087-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggj6fd
title: Occurrence Download

description: A dataset containing 1072 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Ianthocincla bieti, Ianthocincla sukatschewi, Paradoxornis paradoxus, Pterorhinus berthemyi, Pterorhinus courtoisi, Pterorhinus koslowi, Pterorhinus waddelli, Suthora conspicillata, Sinosuthora przewalskii)",
 "Year 1995-2025"
 ]
}

 The dataset includes 1072 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000088-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.