cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/1f4-pr9-alz
title: Eurema hecabe (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dx-538-0ca
title: Lethe manthara (Felder, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ek0-xlx-z9k
title: Delias nais Jordan, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kre-vy0-86a
title: Catopsilia scylla (Linnaeus, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgy-e8l-fhd
title: Leptidea sinapis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wmr-a4e-z3w
title: Delias castaneus Kenrick, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z0b-2hs-46t
title: Erebia lappona Thunberg, 1791

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zr-2by-rhw
title: Stauropus fagi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n3v-hv8-dcj
title: Peridea anceps (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/70f-fma-qe4
title: Drymonia dodonaea ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7w4-2r9-eth
title: Sphinx pinastri Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mqb-f6m-y66
title: Yponomeuta padella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sjc-pt4-tew
title: Biston betularia betularia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tf5-k82-4g3
title: Phalera (Phalera) bucephala (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/537-nah-pvb
title: Leucophlebia hogenesi Eitschberger, 2003

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vg4-xdq-qnh
title: Mimas tiliae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5nq-srx-j74
title: Biston betularia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yw4-y6k-0n8
title: Hepialus humuli (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ep-r63-fpd
title: Furcula furcula (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tqn-qe8-v6d
title: Gelechiidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y5c-mx6-04w
title: Clostera pigra (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rkb-65l-wq0
title: Furcula bifida (Brahm, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z61-eq5-k3a
title: Odontosia carmelita (Esper, 1799)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dwg-y2n-1rt
title: Gluphisia crenata (Esper, 1785)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m1e-5rm-ts0
title: Ptilodon capucina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ebd-zss-9by
title: Stauropus fagi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.t4nz7e
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus indicus (L.) R.Br.",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096896-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9v3-jd9-vxn
title: Pheosia tremula (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sam-w7y-bea
title: Clostera curtula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/045-bcw-8lv
title: Mimas tiliae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ey-tt2-dp8
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/szw-dy2-wpf
title: Yponomeuta padella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bgq2ym
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus indicus (L.) R.Br.",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096897-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3tw-5ck-1sk
title: Macroglossum stellatarum Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wfd-q3r-pz1
title: Notodonta ziczac (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.p4akcq
title: Occurrence Download

description: A dataset containing 4719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-124.45933 31.23585,-68.83818 31.23585,-68.83818 47.05371,-124.45933 47.05371,-124.45933 31.23585))",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 4719 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096894-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ex4-vwk-7tq
title: Notodonta tritophus ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/glc-sxb-3qt
title: Furcula furcula (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fgy-xnw-m96
title: Hyles Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r3e-v10-frc
title: Eucosma Hübner, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/09s-3rj-e3b
title: Deilephila elpenor Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kzz-n80-q2f
title: Stauropus fagi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/szf-dwx-5z0
title: Drymonia querna ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f8r-dgr-djs
title: Thaumetopoea processionea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v66-v7t-ay2
title: Tethea (Tethea) ocularis (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2a4-49r-2zh
title: Deilephila porcellus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2j1-d0j-ced
title: Leucoma salicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/33r-a3l-10s
title: Chlorissa pretiosaria (Staudinger, 1877)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c1g-mjb-vh8
title: Yponomeuta mahalebella Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vt7-wj2-jbv
title: Pheosia tremula (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qpt-6yg-wxs
title: Mimas tiliae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v0s-6rc-wjz
title: Yponomeuta gigas Rebel, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kd4-lmt-dg5
title: Pempelia Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5q3-qtt-cnb
title: Erebia melampus Füssly, 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7qj-tcy-9jf
title: Peridea anceps (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qka-99r-qm3
title: Cilix glaucata (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ps-q35-41n
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eml-b0n-6dm
title: Macroglossum stellatarum Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dqc-xl5-kmz
title: Pterostoma palpina (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e6j-72k-e73
title: Stauropus fagi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.c6tu24
title: Occurrence Download

description: A dataset containing 3023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Troglodytes troglodytes (Linnaeus, 1758)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 3023 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096895-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/a01-q85-fjp
title: Clostera pigra (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m29-4np-bmy
title: Clostera curtula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ays-sy1-q0w
title: Polyploca ridens (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ceerr2
title: Occurrence Download

description: A dataset containing 181366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra salamandra (Linnaeus, 1758)",
 "Country is one of (Holy See, Jersey, Guernsey, Isle of Man, United Kingdom of Great Britain and Northern Ireland, Ukraine, Switzerland, Sweden, Spain, Slovakia, Slovenia, Serbia, San Marino, Russian Federation, Romania, Portugal, Poland, Netherlands, Montenegro, Moldova, Republic of, Monaco, Malta, North Macedonia, Luxembourg, Lithuania, Liechtenstein, Latvia, Italy, Ireland, Iceland, Hungary, Greece, Germany, Åland Islands, Finland, Estonia, Faroe Islands, Denmark, Czechia, Croatia, Bulgaria, Bosnia and Herzegovina, Belgium, Belarus, Austria, Andorra, Albania, France, Cyprus, Georgia, Armenia, Azerbaijan, Türkiye, Norway, Kosovo)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 181366 records from 1823 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096886-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-dc-2262510166
title: Role of PEG chain length on structure and diffusion properties of TPGS-based nanocarriers for the ocular delivery

description: Pathologies affecting the posterior segment of the eye cause irreversible vision loss. Nanovectors can be proposed as delivery systems for the intravitreal administration of drugs to the eye. This experiment aims to characterize TPGS-based micelles with varying pegylated chain lengths (600, 750, 1000, 1500, 2000, 3000, and 4000) suitable for encapsulation of hydrophobic drugs. The structure of the micelles and the diffusion in a vitreous substitute will be investigated by SAXS.
DOI: 10.5281/zenodo.17296294
title: Lygodium microphyllum v1.1.9 genome assembly and annotation

description: Lygodium microphyllum is a highly invasive vining fern. Here, we present the sequencing, assembly, and analysis of the Lygodium microphyllum genome including transcriptomic and epigenomic variation between the gametophyte and sporophyte life phases.

In this repository, we include the assembly and annotation files for the Lygodium microphyllum v1.1.9 genome. 

This data is published in the article: 

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant. Proceedings of the National Academy of Sciences 122(39): e2504773122. https://doi.org/10.1073/pnas.2504773122

Publication Abstract: 

Functional and genomic studies on the differences between the gametophyte and sporophyte life phases of plants remain scarce, yet unraveling these dynamics is crucial to understanding the biology of plants and the success of each phase under different conditions. Here, we provide a reference genome for the highly invasive fern Lygodium microphyllum and compare the transcriptomic and epigenomic landscapes of its gametophyte and sporophyte life phases. Under ambient conditions, we found differential regulation and splicing of developmental genes (homeobox and MADS-box clades) may play a role in the genomic determination of the haploid and diploid life stages. We generated a base pair-resolution methylome of a fern gametophyte, and determined that methylation patterns are remarkably similar between vegetative tissues despite their morphological and functional differences. We further explored the physiological and transcriptomic responses of gametophytes and sporophytes to freezing stress, the most likely abiotic factor limiting further range expansion of this invasive species. While controlled by the same genome, we show that life phases and tissues use alternative molecular pathways in response to freezing and greater physiological resilience in the gametophyte life stage to this stressor. Our results underscore the need to incorporate both life phases when developing effective mitigation strategies, as differential responses to environmental stressors between phases reveal opportunities for management approaches (e.g., targeting gametophytes in addition to sporophytes). These genomic resources fill a gap in our understanding of fundamental plant biology and inform invasive species research.

Sequence data have been deposited in NCBI SRA under BioProject PRJNA1157352 and from 10KP at https://db.cngb.org/search/organism/148566/. The genome assembly is available at NCBI under Accession JBLQGR000000000. Genome assembly and annotations are also available at FernBase (https://fernbase.org/). All code used in this study is available at https://github.com/jessiepelosi/LygodiumGenome.
DOI: 10.5281/zenodo.17296295
title: Lygodium microphyllum v1.1.9 genome assembly and annotation

description: Lygodium microphyllum is a highly invasive vining fern. Here, we present the sequencing, assembly, and analysis of the Lygodium microphyllum genome including transcriptomic and epigenomic variation between the gametophyte and sporophyte life phases.

In this repository, we include the assembly and annotation files for the Lygodium microphyllum v1.1.9 genome. 

This data is published in the article: 

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant. Proceedings of the National Academy of Sciences 122(39): e2504773122. https://doi.org/10.1073/pnas.2504773122

Publication Abstract: 

Functional and genomic studies on the differences between the gametophyte and sporophyte life phases of plants remain scarce, yet unraveling these dynamics is crucial to understanding the biology of plants and the success of each phase under different conditions. Here, we provide a reference genome for the highly invasive fern Lygodium microphyllum and compare the transcriptomic and epigenomic landscapes of its gametophyte and sporophyte life phases. Under ambient conditions, we found differential regulation and splicing of developmental genes (homeobox and MADS-box clades) may play a role in the genomic determination of the haploid and diploid life stages. We generated a base pair-resolution methylome of a fern gametophyte, and determined that methylation patterns are remarkably similar between vegetative tissues despite their morphological and functional differences. We further explored the physiological and transcriptomic responses of gametophytes and sporophytes to freezing stress, the most likely abiotic factor limiting further range expansion of this invasive species. While controlled by the same genome, we show that life phases and tissues use alternative molecular pathways in response to freezing and greater physiological resilience in the gametophyte life stage to this stressor. Our results underscore the need to incorporate both life phases when developing effective mitigation strategies, as differential responses to environmental stressors between phases reveal opportunities for management approaches (e.g., targeting gametophytes in addition to sporophytes). These genomic resources fill a gap in our understanding of fundamental plant biology and inform invasive species research.

Sequence data have been deposited in NCBI SRA under BioProject PRJNA1157352 and from 10KP at https://db.cngb.org/search/organism/148566/. The genome assembly is available at NCBI under Accession JBLQGR000000000. Genome assembly and annotations are also available at FernBase (https://fernbase.org/). All code used in this study is available at https://github.com/jessiepelosi/LygodiumGenome.
DOI: 10.15468/dl.kvkh9n
title: Occurrence Download

description: A dataset containing 1727145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Year 2009-2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1727145 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022740-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kxztz
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Streptopelia turtur (Linnaeus, 1758)",
 "Year 1994-1994"
 ]
}

 The dataset includes 352 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152308-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.30d2tm
title: Occurrence Download

description: A dataset containing 1803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera tigris (Linnaeus, 1758)"
 ]
}

 The dataset includes 1803 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022741-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwms8r
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aesculus sylvatica W.Bartram",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166865-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfolnd
title: Occurrence Download

description: A dataset containing 4840 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calomys callosus (Rengger, 1830)"
 ]
}

 The dataset includes 4840 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022742-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9er8j3
title: Occurrence Download

description: A dataset containing 41646 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lepidoptera collection of National Museum of Nature and Science"
 ]
}

 The dataset includes 41646 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166897-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2gfuf
title: Occurrence Download

description: A dataset containing 71852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Stipa L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71852 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022742-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hesybf
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lydus turcicus Kaszab, 1952"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187024-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.