cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26037/yareta:ef2h6hlu5zc3zhw6fiuywsj54m
title: Maternal obesity increases the risk for hepatocellular carcinoma in offspring through the transmission of an altered gut microbiome

description: Objective: The obesity pandemic leads to a rising number of obese women of reproductive age. Emerging evidence suggests that maternal obesity has a negative impact on the long-term health of offspring. Additionally, obesity is an independent risk factor for malignancies, particularly hepatocellular carcinoma (HCC). The aim of our study is to investigate the impact of maternal obesity on the risk for HCC in the offspring and identify potential mechanisms of transmission.
Methods: Female mice were fed either a high fat (HFD) or a normal diet (ND) before mating. Offspring received ND throughout life. In the offspring, we studied the gut microbiome, liver histology, inflammatory patterns, and tumor load in a diethylnitrosamine-induced HCC mouse model. To normalize the gut microbiome, we co-housed offspring of HFD and ND mothers after weaning. The composition of the gut microbiota was assessed through 16S rRNA sequencing.
DOI: 10.26037/yareta:h7kqhfxslfebffr7ujpmhazsoe
title: Li_Calvi_Gotta_2025

description: EMBO reports manuscript source data
DOI: 10.26037/yareta:jlwgts73nza3nhfscr3om4k7ri
title: Performance of Sieve versus SwissPre prehospital triage algorithms in a simulated mass-casualty incident: a randomized open-label study

description: Dataset from a randomized open-label simulation study comparing the performance of the Sieve and SwissPre prehospital triage algorithms in identifying patients likely to die within 60 minutes if untreated. Using a web-based real-time physiological simulator, 67 participants triaged 30 simulated patients in random order, resulting in 2,010 individual patient assessments.
DOI: 10.26037/yareta:lqze2mcuurdntahzxehoyslqxe
title: Biouptake and Effects of TiO2 and CeO2 Nanoparticles in Algae 

description: We explore the relationship between biouptake and effects of TiO2-NPs and CeO2-NPs on the green alga Raphidocelis subcapitata using advanced single-event techniques. Flow cytometry was used to distinguish algal cells from NP aggregates and determine growth rates, while single-cell inductively coupled plasma mass spectrometry (SC-ICP-MS) quantified adsorbed and internalized metals. Single-particle ICP-MS (SP-ICP-MS) characterized NP size distribution and dissolution
DOI: 10.26037/yareta:mti5iqxierhohfgcblrhfhmfn4
title: NIH Stroke Scale Knowledge Among Stroke Care Professionals in Switzerland: A Multicenter Cross-Sectional Study

description: Dataset used in a secondary analysis aiming to evaluate NIH stroke scale knowledge among healthcare professionals frequently caring for stroke patients and to identify factors that may influence this knowledge.
DOI: 10.26037/yareta:mzfaokbfr5e6hoxnowsgjt62fe
title: Interface density driven metal-to-insulator transition in nickelate based heterostructures

description: Resistance vs Temperature and X ray diffraction raw data
DOI: 10.26037/yareta:o5l4bcz2qvckpofubwvsfdpgae
title: Aktas

description: Lithuanian document for a specific use case: the declaration of independence to be encoded into DNA
DOI: 10.26037/yareta:p7pj6gc3w5bepjq7ysjyxd3piy
title: LiftOn annotation of the leopard gecko (Eublepharis macularius) genome

description: GFF file with the annotation of the leopard gecko genome (NCBI Accession GCA_050574515.1) using LiftOn.
DOI: 10.26037/yareta:qeaep7ndeff3joku7zjlnxtho4
title: Terthiophene Photophysics  Revisited: Independence of the Triplet Quantum Yield on the Excitation Wavelength

description: Experimental data published in:
Terthiophene Photophysics  Revisited: Independence of the Triplet Quantum Yield on the Excitation Wavelength, J. Wega, F. Guignard and Eric Vauthey, J. Phys. Chem. Lett. (2025) 16, 7984-7989.
https://doi.org/10.1021/acs.jpclett.5c02050
DOI: 10.26037/yareta:upchntlfavgizdljt7cyeixtmu
title: Cellosaurus release 53

description: Release 53 of Cellosaurus
DOI: 10.26037/yareta:v6dqk6j63zfkdcfmkaozvrhae4
title: Nature of Metallic and Insulating Domains in the Charge-Density-Wave System 1T-TaSe2

description: Source data of manuscript "Nature of Metallic and Insulating Domains in the Charge-Density-Wave System 1T-TaSe2" by M. Straub et al. published in Phys. Rev. Lett.
DOI: 10.26037/yareta:xkpk4bojqzfctdt2eb34kl64ie
title: Fermi surface and pseudogap in highly doped Sr2IrO4

description: Source data of manuscript "Fermi surface and pseudogap in highly doped Sr2IrO4" by Y. Alexanian et al. published in npj Quantum Materials.
DOI: 10.26037/yareta:yqceixq6i5dbzdj2jlte5sunmm
title: Nanobody‑based Pannexin1 channel inhibitors

description: Nanobody‑based Pannexin1 channel inhibitors increase survival
after cardiac ischemia/reperfusion
DOI: 10.26037/yareta:37u2gpjojfhzfjsvankfapoj3m
title: Diagnostic Interview Transcripts (French)

description: This resource provides transcripts of seven diagnostic interviews conducted in French by medical students from the Faculty of Medicine at the University of Geneva. The interviews, held in the training stations at the Geneva University Hospitals, were recorded and involved standardized patients presenting with symptoms of chest pain or shortness of breath. The recordings were transcribed using Whisper (August 2024) and then revised and anonymized manually.

This resource includes :
	- Two Excel files
		○ One containing the original Whisper-generated transcripts
		○ One containing the manually revised transcripts
	- A PDF document describing the conventions used for transcript revision

Acknowledgement
This resource was developed at the University of Geneva in collaboration with Geneva University Hospitals. This work is part of the PROPICTO project, funded by the Swiss National Science Foundation (N°197864) and the French National Research Agency (ANR-20-CE93-0005). We would also like to thank Prof. Mathieu Nendaz and Dr. Thomas Fassier for facilitating the use of the training stations.
DOI: 10.26037/yareta:47hsvsq6hngg7gc4eashhqtwhi
title: Diagnostic Interview Corpus - Translation

description: The Diagnostic Interview Corpus is a multilingual dataset of 12,754 French medical consultation sentences (questions and instructions) with translations into 12 languages and associated UMLS-based semantic glosses. It supports research on low-resource medical machine translation, semantic representation, and pictograph generation.

Languages
- Source: French
- Targets (in translations.csv): Albanian, Modern Standard Arabic, Tunisian Arabic, Moroccan Arabic, Algerian Arabic, Dari (Afghan Persian), Farsi (Iranian Persian), Russian, English, Spanish, Tigrinya, Ukrainian
- Semantic gloss  (in translations.csv): French sentences aligned with UMLS glosses (concept sequences + functional tokens).
- Paraphrases (in paraphrases.csv): French paraphrases aligned with the corresponding French source sentences, generated through a grammar-based approach to ensure controlled syntactic variation

Domains and registers
- Medical consultations
- Questions and instructions (e.g., symptom checks, treatment directives)
- Categories by body region (e.g., head, chest, abdomen)

Features
- Parallel multilingual translations created and adapted with clinical experts
- Semantic gloss layer (UMLS CUIs + functional tokens) for pictograph generation
- Patient-centered simplifications and cultural adaptations to improve comprehension

Example
French: Avez-vous des nausées ou des vomissements ?
English: Do you have nausea or vomiting?
UMLS gloss: You | Nausea | or – article | Vomiting | Question

Intended Use
- Low-resource multilingual MT research
- Semantic representation learning (UMLS-based)
- Pictograph translation systems for patients with limited health literacy
- Evaluation of medical-domain MT beyond surface-level accuracy

Acknowledgements
This corpus was developed in the context of the BabelDr and PictoDr projects at the University of Geneva in collaboration with Geneva University Hospitals.This work is part of the PROPICTO project, funded by the Swiss National Science Foundation (N°197864) and the French National Research Agency (ANR-20-CE93-0005). This project also received funding by the ”Fondation Privée des Hôpitaux Universitaires de Genève”.
DOI: 10.26037/yareta:4q74hn6kbjgkji5ktto55cmzz4
title: Impact of transjugular intrahepatic portosystemic shunt on hepatocellular carcinoma:  A prospective cohort of liver transplant candidates analysis

description: Transjugular intrahepatic portosystemic shunt (TIPS) is used to mitigate the side effects of portal hypertension. Its impact on hepatocellular carcinoma (HCC) remains unclear. 
We conducted an analysis of 43,734 liver transplant candidates with  HCC from the prospective Scientific Registry of Transplant Recipients (SRTR) database between 1985-2022. A total 7,404 patients with and without TIPS were propensity score matched 1:3. We assessed wait-list changes in total tumor volume, number of HCC , and alpha-fetoprotein levels. We examined survival rates from time of listing and post-transplantation, as well as the incidence of HCC recurrence post-transplantation.
Before matching, patients with TIPS exhibited poorer liver function and less advanced HCCs compared to patients without TIPS. After matching, TIPS was associated with a decrease in the number of HCC nodules (-0.24 vs 0.11, p = 0.008) over a median waiting period of 225 days (IQR 94; 441) and a better overall survival rate from listing (93.0% vs 89.1% at one year, p = 0.0003). TIPS was not associated with altered changes in waitlist tumor volume (0.26 vs -0.07 cm3/month, p = 0.26) and AFP (14.62 vs 12.67 ng/mL, p = 0.79) compared to the non-TIPS group. Both post-transplant survival rates (91.8% vs 91.7% at one year, p = 0.25) and incidence of HCC recurrence (5.2% vs 5.4% at 5 years, p = 0.73) were similar between groups with a median follow-up duration of 5.6 years (IQR 2.7; 9.6).
TIPS is associated with improved waitlist survival and a reduction in the number of HCC , potentially due to a better efficacy in HCC treatment. However, TIPS did not have a measurable impact on HCC growth or aggressiveness.
DOI: 10.26037/yareta:5otraeqhnfaczja6dbxgjv5poa
title: Nature of 2D XY antiferromagnetism in a van der Waals monolayer

description: Data set for: 
https://doi.org/
DOI: 10.26037/yareta:cvlb5qujzzc3ti3pgxq62y76ui
title: Workshop 13 May 2024 : SPEECH PRODUCTION MODELS AND EMPIRICAL EVIDENCE FROM TYPICAL AND PATHOLOGICAL SPEECH

description: The present document is an edited version of the automatic transcription of the discussions during the Workshop that has been organized on the 13th of May 2024, in the context of the Swiss National Science Foundation Sinergia  ChaSpeePro project and in collaboration with Gipsa-Lab. 

The workshop was aimed at debating theoretical positions and empirical evidence from both typical and pathological speech on three major questions, each discussed in a round table: 
1.	Planning/programming/execution or phonological/phonetic/motor encoding (or other encoding/computing distinctions): how to define the different processes in (motor) speech production?
2.	Encoding units/representations in speech production models: which ones, how many different units, how are they selected and combined in larger units?
3.	How are different speech modes (whispered, loud, fast, clear, …) encoded/parametrized for production?
The round tables have been recorded with authorization of all speakers. Each edited transcription is 
 preceded by a summary of the discussions.
DOI: 10.26037/yareta:e3zggd5vx5hnnbsrgtbnmuxngm
title: Long-chain unsaturated fatty acids released during immune responses stimulate host-microbe trans-kingdom communication

description: Tabular data and codes related to the above manuscript
DOI: 10.26037/yareta:gmr7hvps5vbhlmeloxnoqktl5u
title: The Luminal Ring Protein C2CD3 Acts as a Radial In-to-Out Organizer of the Distal Centriole and Appendages

description: Raw data
DOI: 10.26037/yareta:idtxttl4yncyrjmxp354tmqwfi
title: LA RCT LoAD Calc vs usual

description: Randomized Controlled Trial Evaluating the LoAD Calc Mobile App for Calculating Maximum Safe Local Anesthetic Doses
DOI: 10.26037/yareta:igm4ac55hnhajjudysfc7pdpie
title: Supplementary Materials for : Impact of SNAPPS clinical supervision method on clinical reasoning of post-graduation medical residents: A mixed methods study in a real clinical context

description: This repository contains the supplementary materials for the study "Impact of SNAPPS clinical supervision method on clinical reasoning of post-graduation medical residents: A mixed methods study in a real clinical context",organized into the following sections:
Supplementary Material 1: Data Collection Tools and Results
This section contains:
Data collection instruments: Sociodemographic questionnaire, clinical reasoning steps documentation, and SNAPPS method grid
Quantitative research tools: Feedback questionnaires
Qualitative research tools: Focus group guides
Corresponding results: Processed outcomes from feedback assessments and focus group analyses
Supplementary Material 2: Methodological Checklists
Contains the completed CONSORT Checklist Adapted for Pragmatic Trials.
Supplementary Material 3: Trial Pragmatism Assessment 
Includes the completed PRECIS-2 Tool for trial pragmatism.
DOI: 10.26037/yareta:j5ecxqy32jcehjnbc4nopl4shm
title: Exciton Trapping with a Twist

description: Data presented in: 'Exciton Trapping with a Twist'
DOI: 10.26037/yareta:mthw5jev2remhba42p4ubeoa2q
title: Chimeric liver transplantation reveals interspecific graft remodelling

description: Dataset corresponding to the publication in Journal of Hepatology 2018
Graziano Oldani ∙ Andrea Peloso ∙ Sandrine Vijgen ∙ Elizabeth M. Wilson ∙ Florence Slits ∙ Quentin Gex ∙ Philippe Morel ∙ Vaihere Delaune ∙ Lorenzo A. Orci ∙ Tomoyuki Yamaguchi ∙ Toshihiro Kobayashi ∙ Laura Rubbia-Brandt ∙ Hiromitsu Nakauchi ∙ Stéphanie Lacotte ∙ Christian Toso

Chimeric animals are composed of cells from different species. Chimeric animals carrying human tissue have the potential to increase the availability of transplantable organs. We transplanted rat-to-mouse liver grafts into newly weaned rats. The chimeric grafts underwent post-transplant remodelling with rat hepatocytes replacing all mouse hepatocytes within 56 days. In addition, we observed the post-transplant development of diffuse mature rat bile ducts through the transformation of hepatocytes, and patchy areas of portal endothelium originating from the host. These data demonstrate the efficacy of transplanting rat-to-mouse chimeric livers into rats, with a high potential for post-transplant graft remodelling.
DOI: 10.26037/yareta:rhngiyubv5d6rnlfets4rw5qri
title: Supplementary file (Impact of parathyroidectomy on vascular stiffness: exploring pulse wave velocity and renal resistive index)

description: Supplementary files of the article "Impact of parathyroidectomy on vascular stiffness: exploring pulse wave velocity and renal resistive index" (Huber A. et al.)
DOI: 10.26037/yareta:rij6bpbhwvfalhmajupmiucr5m
title: Li et al, EMBO Reports 2025

description: Data of article of Yi Li, Ida Calvi and Monica Gotta submitted to EMBO Reports
DOI: 10.26037/yareta:tpkszhbgtnepzffp4ewbogc2wq
title: Edge polaritons at metal-insulator boundaries in a phase separated correlated oxide

description: Data for the figures in the main text
DOI: 10.26037/yareta:vhpfezelunby7k52hflhmezele
title: Photoinduced Charge-Transfer Dynamics in Fluorescent Electron Donor-Acceptor Polymers

description: Data presented in: 'Photoinduced Charge-Transfer Dynamics in Fluorescent Electron Donor-Acceptor Polymers', E. Sucre-Rosales, S. Ye, Y. Bao and E. Vauthey, Chem. Sci.
DOI: 10.26037/yareta:vo7jydjb25ektpwcvlxwktr72m
title: UMLS Concepts to Pictographs

description: This resource provides pictograph illustrations for UMLS (Unified Medical Language System) concepts and other functional concepts used in the Diagnostic Interview Corpus (see other deposits for the Propicto Project).

The pictographs were selected and/or created for use in pictograph sequences, designed to facilitate diagnostic interviews. All concept-pictograph associations were submitted to human evaluation.

This resource includes:
- a compressed file containing 1331 image files (BMP, GIF and SVG files)
- a tab-separated file for 1400 concept-pictograph pairs with metadata including human evaluation results

This resource was developed at the University of Geneva in collaboration with Geneva University Hospitals. This work is part of the PROPICTO project, funded by the Swiss National Science Foundation (N°197864) and the French National Research Agency (ANR-20-CE93-0005).
DOI: 10.26037/yareta:xkxjrec7mfdadafvaclnna322y
title: Brinkmann_et_al_difficulty_effort

description: Influence of a task difficulty manipulation (easy vs. difficult) of a cognitive task on effort-related cardiovascular reactivity.
DOI: 10.26037/yareta:zlu2kvlvl5d4zebrnwsd5w4wde
title: Brain processes of loud speech and faking an accent as a window on motor speech planning/programming (Cortex)

description: - Study contrasting loud speech/Faking an english accent with standard speech.
- 20 neurotypical speakers aged from 18 to 37 years old.
- Paradigm: Delayed production task (see Laganaro & Alario (2006))
- EEG system: Biosemi with 128 electrodes and a sampling frequency of 512 Hz
DOI: 10.26037/yareta:53eg74ujvbedvpdh2ynsxbd4fy
title: Hepatectomy alters adjuvant anti-PD-1 action in a mouse model of HCC but does not compromise neoadjuvant efficacy

description: All data supporting the publication "Hepatectomy alters adjuvant anti-PD-1 action in a mouse model of HCC but does not compromise neoadjuvant efficacy"
DOI: 10.26037/yareta:5amaf72rdfdd3eb7liq5aya4su
title: Climate Analogues of European Vineyards

description: This repository contains the code and data processing workflows used to analyse climate-driven shifts in European viticulture through a climate analogues framework. The scripts implement bioclimatic indices related to vine growth and pathogen risk, account for vineyard-scale topography, and handle redundancy between climate indicators. The code enables identification of regions that are currently climatically analogous to projected future vineyard conditions, supporting both adaptation and expansion strategies in viticulture under climate change scenarios.

For an easy visualisation of the results, discover the Climate analogues - vines app (MacOS and iOS: https://apps.apple.com/fr/app/id6756234067).

The code in this repository was used to produce the analysis presented in:
Allaman, Héloïse, Goyette, Stéphane, Dubuis, Pierre-Henri and Kasparian, Jérôme, Future Viability of European Vineyards Using Bioclimatic Climate Analogues (https://doi.org/10.1016/j.agrformet.2025.110978).
DOI: 10.26037/yareta:bywoffiptrbgnekjr2xjogz7mu
title: Structural Modulation and Enhanced Magnetic Ordering in Incommensurate K1−xCrSe2 Crystals

description: This data base contains the data shown in the figures of "Structural Modulation and Enhanced Magnetic Ordering in Incommensurate K1−xCrSe2 Crystals", published in the Journal of the American Chemical Society as doi:10.1021/jacs.4c13545
DOI: 10.26037/yareta:ehkvr2be4za3bchnlyjv6pgeie
title: Dataset for Densely-Functionalized Bicyclic Cyclopentanones by Combined Photoinduced 6-endo-trig Giese Additions and Mild Aldol Cyclizations

description: Polycyclic scaffolds are central to numerous natural products and pharmaceuticals, motivating concise, stereocontrolled routes to their construction. We report a photoredox-enabled synthesis of trans-fused [n.3.0] bicyclic ketones (n = 4, 5, 10) from malonate-derived enol ethers. α-Brominated intermediates, formed by acylation with 2-bromo-2-methylpropanoyl bromide, undergo radical cyclization under two complementary conditions: (i) acridinium orange (AOH+) with Hantzsch ester (HE) at 455 nm, or (ii) photoexcited HE alone at 365 nm. Both modes trigger 6-endo-trig Giese addition, C–O bond fragmentation, and hydrogen-atom transfer to α-branched cyclic ketones that ring-close under mild Brønsted or Lewis acid activation to trans-fused products with exclusive junction control. Mechanistic studies (Stern–Volmer, UV–Vis, electrochemistry) support two activation pathways—AOH+* quenching by HE or direct HE excitation— each generating the same radical intermediates in fine. DFT calculations validate mechanistic pathways and regioselectivity in favor of a philicity matching of the electrophilic radical and the polar electron-rich enol ether. The method accommodates ring-size diversity, accesses trans-hydrindanone architectures, and outcompetes 5-exo-trig spirocyclization.
DOI: 10.26037/yareta:fsfjfpbndvboxgrwnayldkd73y
title: Trade-offs in insect eye nanocoatings: Implications for vision, ecology, and climate sensitivity.  

description: Functional traits shape ecological niches, yet the interplay between nanoscale structural modifications, sexual dimorphism, and habitat range remains poorly understood. In fireflies, cuticular nanostructures that enhance bioluminescent signaling efficiency also impose ecological constraints. Anti-reflective nanocoatings improve cuticle transparency and optical performance but typically increase surface adhesion, reducing fitness. In Luciola lusitanica, this trade-off is mitigated by temperature-sensitive nanocoatings that form only within a narrow thermal range, limiting habitat expansion. This study presents the first thermodynamic analysis of environmentally constrained nanocoating formation, demonstrating how small temperature fluctuations can destabilize protein-lipid self-assembly. These findings link nanoscale biophysics to ecological resilience, providing a framework to understand how the environmental sensitivity of structural self-organization shapes adaptation, species distribution, and evolutionary potential.
DOI: 10.26037/yareta:gsciqvezcffqpoxxie5qfy7nyy
title: Loss of Fsr quorum sensing promotes biofilm formation and worsens outcomes in enterococcal infective endocarditis - GC-MS Dataset

description: Raw GC-MS Data associated with the manuscript 'Loss of Fsr quorum sensing promotes biofilm formation and worsens outcomes in enterococcal infective endocarditis' by Antypas et al.

Infective endocarditis (IE) is a life-threatening biofilm-associated infection, yet the factors driving biofilm formation in this setting remain poorly understood. Here, we identified the Fsr quorum sensing (QS) system of Enterococcus faecalis as a potent negative regulator of IE pathogenesis. Using microfluidic and in vivo models, we show that Fsr is induced in late IE when bacteria become shielded from blood flow. Deleting Fsr promoted robust biofilm growth, partly through downregulation of gelE and sprE, reprogrammed metabolism by upregulating lrgAB to enhance pyruvate utilization, and increased gentamicin tolerance in vivo. Furthermore, the Fsr-regulated protease GelE cleaved human pro-IL-1β into a bioactive fragment, suggesting a potential species-specific mechanism for inflammation modulation by QS. Consistent with our pre-clinical findings, analysis of two IE patient cohorts linked naturally occurring Fsr-deficient E. faecalis to prolonged bacteremia and a higher disease severity score.  Overall, our findings provide insights into the role of QS in biofilm growth and persistence in IE.

This dataset contains the raw data of the gas chromatography-mass spectrometry (GC-MS) analysis, quantifying lactic acid, pyruvic acid and L-alanine in cell pellets (CL) and supernatant (SN) of OG1RF WT, Δfsr, lrgA::Tn, and lrgB::Tn cultured under aerobic (AER) and anaerobic (ANA) conditions.
Details of the analyses including sample harvest, metabolite extraction, derivatization, GC-MS settings and metabolite quantification are described in the Material and Methods section of the manuscript.
The data was acquired with a 8890 GC System (Agilent Technologies) equipped with a DB5 capillary column (J&W Scientific, 30 m, 250 μm inner diameter, 0.25-μm film thickness, 10-m inert duraguard) connected to a 5977B GC/MSD in electron impact (EI) mode linked to a 7693A autosampler (Agilent Technologies). The files are .D format.