cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/f3kg9rsn7x.1
title: Data for: Breastfeeding in Women with Type 1 Diabetes Mellitus

description: There are well-recognised maternal and infant benefits conferred by breastfeeding. Type 1 diabetes mellitus (T1DM) is an important endocrinopathy affecting women of childbearing age. However, little information exists regarding the impact of breastfeeding on glycaemic control in women with T1DM and the impact of T1DM on lactation. Further, it is unclear if suckling induces acute changes in maternal glycaemia. This review explores the process of lactogenesis in women with T1DM, the impact of lactogenesis on maternal insulin requirements and the potential mechanisms and changes of suckling on maternal glucose levels.
DOI: 10.17632/f3kg9rsn7x.2
title: Data for: Breastfeeding in Women with Type 1 Diabetes Mellitus

description: There are well-recognised maternal and infant benefits conferred by breastfeeding. Type 1 diabetes mellitus (T1DM) is an important endocrinopathy affecting women of childbearing age. However, little information exists regarding the impact of breastfeeding on glycaemic control in women with T1DM and the impact of T1DM on lactation. Further, it is unclear if suckling induces acute changes in maternal glycaemia. This review explores the process of lactogenesis in women with T1DM, the impact of lactogenesis on maternal insulin requirements and the potential mechanisms and changes of suckling on maternal glucose levels.
DOI: 10.5061/dryad.006bf/1
title: Histoplasma Raw Data
DOI: 10.5061/dryad.006bf/2
title: Supplementary Tables: S1-S6 (Sepulveda et al. mBio 2017)
DOI: 10.5061/dryad.006bf/3
title: Histoplasma H88: Reference genome
DOI: 10.5061/dryad.006bf/4
title: Histoplasma BAM files
DOI: 10.5061/dryad.32bp4/1
title: Appendix 1 - GenBank sequences

description: All sequence data used for this study (a file is generated per gene).
DOI: 10.5061/dryad.32bp4/2
title: Appendix 2 - Gene alignments and trees

description: The individual gene alignments as recovered by MAFFT. Results of the Bayesian phylogenetic analyses for each gene, and an explanation of the results.
DOI: 10.5061/dryad.32bp4/22
title: Appendix 8 - Bayesian paleoenvironmental model

description: Description of the Bayesian episodic environment-dependent birth-death model.
DOI: 10.5061/dryad.32bp4/3
title: Appendix 3 - Parnassiinae_Fossils_MB

description: The total-evidence matrix (including molecular and morphological data) used for the phylogenetic placement of fossils with MrBayes.
DOI: 10.5061/dryad.32bp4/4
title: Appendix 4 - BEAST files for the dating analyses

description: The BEAST files for the Bayesian dating analyses (the tree prior can be a Yule process or a birth-death model, and the dataset can include or not the morphological data).
DOI: 10.5061/dryad.32bp4/5
title: Appendix 5 - Parnassiinae Distribution

description: The current geographic species distribution data of all Parnassiinae as coded present (1) or absent (0) in all ten geographic areas (Western Palearctic, North Africa, Turkey, Central Asia, Himalaya, India, Mongolia, Siberia, China-Japan, and Western Nearctic).
DOI: 10.5061/dryad.32bp4/6
title: Appendix 6 - Adjacency matrices through time

description: The time-stratified biogeographic model used for DEC analyses (time slices represent geological epochs or stages in the Cenozoic).
DOI: 10.5061/dryad.32bp4/7
title: Appendix 7 - Himalaya and Tibetan paleoaltimetry

description: Paleo-elevation for the Himalayan and Tibetan compiled from the literature.
DOI: 10.5061/dryad.32bp4/8
title: Appendix 9 - PartitionFinder analyses and results

description: Results of PartitionFinder performed on the concatenated molecular dataset.
DOI: 10.5061/dryad.46pk7/1
title: VCF file with Copy Number Variation events over 35 accessions relative to the reference genome v2.1

description: Catalog of copy number variants identified over 35 accessions relative to the reference genome v2.1. The file was assembled clustering events predicted in individual accessions using the implementation of the CNVnator algorithm implemented in NGSEP. The file was compressed with bgzip. GZI and tbi indexes for this file are also provided with this data publication
DOI: 10.5061/dryad.46pk7/2
title: GZI index for the file with copy number variation events relative to the bean reference genome v2.1

description: GZI index for the file with copy number variation events relative to the bean reference genome v2.1. This file was generated using the bgzip tool (http://www.htslib.org/doc/tabix.html)
DOI: 10.5061/dryad.46pk7/6
title: Regions masked as repetitive in the reference genome v2.1

description: Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1. See https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Pvulgaris for details.
DOI: 10.5061/dryad.46pk7/7
title: Regions from the reference genome v2.1 called repetitive based on reads with non-unique alignments

description: Catalog of regions marked as repetitive by NGSEP, based on Illumina reads from G19833 with non-unique alignments to the reference genome
DOI: 10.5061/dryad.46pk7/8
title: Merging of regions identified as repetitive in the reference genome v2.1

description: Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1, or  marked as repetitive by NGSEP, based on Illumina reads from G19833 with non-unique alignments to the reference genome. This is the file provided here containing the largest amount of predicted repetitive regions in the reference genome
DOI: 10.5061/dryad.46pk7/9
title: TBI index for the file with copy number variation events relative to the bean reference genome v2.1

description: TBI index for the file with copy number variation events relative to the bean reference genome v2.1. This file was generated using the tabix tool (http://www.htslib.org/doc/tabix.html)
DOI: 10.5061/dryad.67gk284/1
title: NJB-01580-R data
DOI: 10.5061/dryad.73kq1/17
title: 160805A-3
DOI: 10.5061/dryad.73kq1/18
title: 160809-1
DOI: 10.5061/dryad.73kq1/19
title: 160809-2
DOI: 10.5061/dryad.73kq1/20
title: 160809-3
DOI: 10.5061/dryad.73kq1/21
title: 161016A-1
DOI: 10.5061/dryad.73kq1/22
title: 161016A-2
DOI: 10.5061/dryad.73kq1/23
title: 161017-1
DOI: 10.5061/dryad.73kq1/24
title: 161016A-3
DOI: 10.5061/dryad.73kq1/25
title: 161017-2
DOI: 10.5061/dryad.73kq1/26
title: 161017-3
DOI: 10.5061/dryad.dv322/10
title: SWP microsatellite

description: TSV files containing SWP microsatellite data
DOI: 10.5061/dryad.dv322/12
title: Centroid size of lower second of Babirusa and SWP

description: Centroid size for the lower M2
DOI: 10.5061/dryad.dv322/13
title: Shape of lower second molar of Babirusa and SWP

description: Shape coordinates after superimposition for the lower M2
DOI: 10.5061/dryad.dv322/14
title: Sample list for second lower molar TPS and NTS files
DOI: 10.5061/dryad.dv322/15
title: Shape of third second molar of Babirusa and SWP

description: Shape coordinates after superimposition for the lower M3
DOI: 10.5061/dryad.dv322/16
title: Centroid size of lower third molar of Babirusa and SWP

description: Centroid size for the lower M3
DOI: 10.5061/dryad.dv322/17
title: Sample list for third lower molar TPS and NTS files
DOI: 10.5061/dryad.dv322/4
title: Babirusa microsatellite

description: TSV files containing Babirusa microsatellite data
DOI: 10.5061/dryad.dv322/9
title: SWP mtDNA

description: Fasta files containing SWP mtDNA data
DOI: 10.5061/dryad.gn2664t/1
title: Adult Experts’ Perceptions of Telemental Health for Youth: A Delphi Study
DOI: 10.5061/dryad.h8f66/1
title: Cheirogaleus crossleyi assembled transcripts

description: Transcripts were assembled from 17 RNA-Seq samples using Trinity. The samples were from white adipose tissue from 6 individuals.
DOI: 10.5061/dryad.h8f66/2
title: Cheirogaleus crossleyi transcript annotations

description: List of transcripts with sequence homology hits to human proteins annotated in Ensembl.
DOI: 10.5061/dryad.h8f66/3
title: Cheirogaleus sibreei assembled transcripts

description: Transcripts were assembled from 6 RNA-Seq samples using Trinity. The samples were from white adipose tissue from 2 individuals.
DOI: 10.5061/dryad.h8f66/4
title: Cheirogaleus sibreei transcript annotations

description: List of transcripts with sequence homology hits to human proteins annotated in Ensembl.
DOI: 10.5061/dryad.hj093/1
title: bpp

description: BPP folder: This folder contains a set of 1877 aligned loci, and the neccessary control and mapping files to conduct the analysis, with sample output files.                                             - necturus_bpp_2000_cut: input file for bpp
- necturus.Imap.txt: map of individuals to populations
- bpp.ctl: sample control file for correct tree topology
- out_correct.txt: sample output for correct tree topology
- out_reverse.txt :sample output for incorrect tree topology
DOI: 10.5061/dryad.hj093/2
title: necturus_3pops

description: necturus_3pops: Input file for Migrate-n. This file contains a random subset of 1000 loci organized by the three river basins, Kentucky, Licking, and Kinniconick.
DOI: 10.5061/dryad.hj093/3
title: necturus.phylip

description: necturus.phylip: Input file for SVDquartets. This file contains a subset of 3,672 concatenated loci.
DOI: 10.5061/dryad.hj093/4
title: necturus.vcf

description: necturus.vcf: Input file for admixture and DAPC analyses. This file includeds the set of 6,873 unlinked loci.
DOI: 10.5061/dryad.hj093/5
title: Suppl stitch script

description: Suppl stitch script: Script written by Paul Hime to stitch together ddRad reads
DOI: 10.5061/dryad.nm3d3/4
title: tree_species_info

description: This file provides taxonomic information corresponding to the codes used in the other files for the 12 common species.
DOI: 10.5061/dryad.nm3d3/5
title: Kargudi_daily_rainfall

description: This file contains 24 yr long (1990-2013) daily rainfall record at Kargudi weather station, 4 km away from the 50 ha Mudumalai Forest Dynamics Plot.
DOI: 10.5061/dryad.q0032/1
title: natural_populations_individual

description: This file contains data from transects in natural populations on individual plants. This dataset supports the section on the methods and results called "Environmental correlates of flower color variation"
DOI: 10.5061/dryad.q0032/2
title: natural_populations_plot

description: This file contains the data to analyze the environmental correlates of flower color variation. The results are laid out in the text (Environmental correlates of flower color variation) and Table S3.
DOI: 10.5061/dryad.t096s.1/1.1
title: fastq.part1

description: Raw sequences reads, demultiplexed paired-end fastq files, samples S1-S75
DOI: 10.5061/dryad.t1p7c/1
title: Dataset 1 Experiment A results data

description: Dataset 1 consists of animal signalment, survival and pathogen infection intensity data from the animals in Experiment A. These data are contained in Dataset 1, as a single comma-separated file (.csv format), entitled ‘Dataset 1 Experiment A results data’ [Data Citation 1]. Each row below the header represents an individual frog (n = 353, from the original 355 minus two whose data were removed due to mortality pre-exposure), and columns (n = 55) contain frog identifier and treatment group information, signalment and measurement data, raw qPCR results, and length of survival data. Full descriptions of the column headers are contained in the associated readme file. Please see the associated metadata records in Supplementary File 1 for full details of study subjects and swab samples collected.
DOI: 10.5061/dryad.t1p7c/2
title: Dataset 2 Experiment B results data

description: Dataset 2 consists of animal signalment and pathogen infection intensity data from the animals in Experiment B. These data are contained in Dataset 2, as a single comma-separated file (.csv format), entitled ‘Dataset 2 Experiment B results data’ [Data Citation 1]. Each row below the header represents an individual frog (n = 61, from the original 51 frogs in this experiment plus the 10 frogs that were obtained from Experiment A and sampled when moribund at 28-30 days post exposure). Columns (n = 27) contain frog identifier and treatment group information, signalment and measurement data, and qPCR results data. Full descriptions of the column headers are contained in the associated readme file. Please see the associated metadata records in Supplementary File 1 for full details of study subjects and swab samples collected.
DOI: 10.5061/dryad.t1p7c/3
title: Dataset 4 Sequencing quality control data

description: Dataset 4 consists of a summary of the phred Q-score quality control data accompanying the sequence data from each tissue sample (described above). These data are contained in Dataset 4 as a single comma-separated file (.csv format). Descriptions of the column headers are contained in the associated readme file.
DOI: 10.5061/dryad.t1p7c/4
title: Dataset 5.1 Liver-filtered-condensed

description: Dataset 5 consists of de novo assembled transcriptomes for each tissue type from frogs in Experiment B (n = 61). These data are contained in Dataset 5, as six individual .fasta text files, including both nucleotide sequence assembly files and amino acid sequence assembly files (translated using TransDecoder) for each of the three tissue types (skin, liver and spleen) [Data Citation 1]. Descriptions of the sequence identifier lines are contained in the associated readme file.
DOI: 10.12751/g-node.3cfa73
title: Lateral Integration During Memory Retention in Mushroom Body Output Neurons of the Honeybee

description: The dataset includes recordings of mushroom body output neurons (MBON). Before, during and after unilateral conditioning. The conditioning was performed at the antennae contralateral to the recording position. Tests before and after conditioning were performed to both antennae.
description: Related Reference: Strube-Bloss MF, Nawrot MP, Menzel R (2016) Neural correlates of side-specific odour memory in mushroom body output neurons, Proceedings of the Royal Society of London B: Biological Sciences, The Royal Society 283. DOI: 10.1098/rspb.2016.1270
DOI: 10.17632/b2zpc37rp9.1
title: Data for: ISSR and ITS analyses to assess genetic diversity and phylogeny to conserve an endemic and critically endangered tree, Memecylon subcordatum, in India

description: GPS recordings of Memecylon subcordatum from Kalakkad-Mundanthurai Tiger Reserve in India.
DOI: 10.17632/rz38ccfc57.1
title: Data for: Will hospital peer grouping by patient socioeconomic status fix the Medicare Hospital Readmission Reduction Program or create new problems?

description: Data used in this article are available from public sources provided by CMS.
DOI: 10.5061/dryad.22sf7/1
title: Trachylepis affinis forest and ecotone thermal tolerance

description: Critical thermal minimum and maximum values measured for all individuals collected in the ecotone (n=7) and forest sites (n=29) from June 2015 to April 2016.
DOI: 10.5061/dryad.22sf7/2
title: Trachylepis affinis locality points in Cameroon

description: List of coordinate points for sites in Cameroon where T. affinis has been found during the period of 2001 to 2005.
DOI: 10.5061/dryad.22sf7/3
title: Trachylepis affinis raw maximum running speed data

description: Maximum running speed values (in m/s) measured at seven different body temperatures for individuals collected from ecotone  (n=7) and forest sites (n=29) from June 2015 to April 2016.
DOI: 10.5061/dryad.22sf7/4
title: Trachylepis affinis thermal performance values

description: Range of thermal physiological metrics for each individual collected in the ecotone (n=7) and forest sites (n=29) from June 2015 to April 2016. These values were extracted from the "double exponential" model fit to the raw maximum running speed data (Appendix 1, Table A1).
DOI: 10.5061/dryad.32bp4/10
title: Appendix 11 - Bayes factors Dating

description: Results of the model comparison for the dating analyses based on marginal likelihood estimates and Bayes factors.
DOI: 10.5061/dryad.32bp4/11
title: Appendix 12 - Parnassiinae DEC

description: Biogeographic history of Parnassiinae as estimated by DEC.
DOI: 10.5061/dryad.32bp4/13
title: Appendix 14 - SSE models

description: Results of the MuSSE and GeoSSE analyses performed on 200 trees randomly taken from the Bayesian dating analysis. Models are ranked by AICc.
DOI: 10.5061/dryad.32bp4/14
title: Appendix 13 - DDD Parnassiinae

description: Results from the diversity-dependence diversification analyses in DDD.
DOI: 10.5061/dryad.32bp4/15
title: Appendix 15 - MuSSE MCMC difference on speciation rates

description: Plot of the difference between speciation rates between all traits. When the difference overlaps zero (vertical red bar), the speciation rates are not significantly different.
DOI: 10.5061/dryad.32bp4/16
title: Appendix 16 - Robustness of SSE analyses

description: Robustness of the SSE models with simulation tests, HiSSE analyses and an implementation in RevBayes. For the simulation, the difference of fit between the best model and the reference model is shown with the red vertical line for real data, and in black for simulated data. HiSSE and RevBayes agree with the MuSSE models on host plants.
DOI: 10.5061/dryad.32bp4/17
title: Appendix 17 - BAMM analyses

description: Summary of diversification models in BAMM compared across a gradient of values for the Poison process governing the number of rate shifts.
DOI: 10.5061/dryad.32bp4/18
title: Appendix 18 - Credible set of speciation shifts in Parnassiinae

description: Credible set of configuration shifts inferred with BAMM and five different values of the Poison prior. It shows the distinct shift configurations with the highest posterior probability. For each shift configuration, the locations of rate shifts are shown as black circles, with circle size proportional to the marginal probability of the shift.
DOI: 10.5061/dryad.32bp4/9
title: Appendix 10 - Time-calibrated trees of Parnassiinae

description: Time-calibrated trees of Parnassiinae as estimated by BEAST following four different analyses.
DOI: 10.5061/dryad.4ck56/1
title: DataSummary

description: Matlab 2017B .mat data file
DOI: 10.5061/dryad.4qt17/1
title: supplementary-material_Appendix A

description: To improve the phytogeographic characterization of peninsular Italy, we analysed and compared the spatial distribution of woody flora at species and genus levels along an approximate 160 km west–east transect within the central peninsula (Lazio and Abruzzo regions). A total of 1710 occurrence data, 138 species, and 74 genera from 153 floristic relevés was used. Woody flora types and subtypes were identified.
Appendix A includes: list of the relevés (environmental variables, surface, data, source, type, and subtype are reported for each relevé); presence/absence data of woody species in each relevé (one table for each subtype is presented); and list of the species data (genus, family, chorotype, and life-form are reported for each species).
DOI: 10.5061/dryad.5pr17/1
title: Ziter_Turner_2018_UrbanSoil_Data

description: Urban soil data collected in Madison, WI, USA. The zipped folder contains core data used for analyses, including soil physical properties (bulk density, texture, Ksat), soil carbon, soil phosphorous, and SSURGO soil type for 100 field sites across 5 urban land-cover classes (forest, prairie, open space, low-density residential, medium-density residential).
DOI: 10.5061/dryad.5r2f8/1
title: Tiger Demography in Shuklaphanta and Babai Valley

description: Demographic Population Size of Tigers in Shuklaphanta National Park and Babai Valley in Bardia National Park. This also include the details on common tiger between Nepal and India transboundary protected area
DOI: 10.5061/dryad.5r2f8/2
title: GIS file of MCP from Suklaphanta and Babai

description: File contains year wise the locations where tiger were captured and these information were used to develop MCP
DOI: 10.5061/dryad.6b058n7/1
title: General_information_readme

description: general description of project and description of manuscript files
DOI: 10.5061/dryad.6b058n7/20
title: Schuermann_Figure_1

description: Schuermann_Figure_1 - contains Prism-File "angles between nearest neighbours" to quantify patterns of immunoggold-labelling of cell-surface associated large Hedgehog (Hh) morphogen clusters. Contains Folder "IEM of Shh on Bosc23" showing original IEM data. Contains PyMol file "apbs_olig_hh.pse" showing a modelled fly Hh pentamer using crystal lattice interactions observed in the human Sonic Hh crystal structure pdb3m1n as a template.
DOI: 10.5061/dryad.6b058n7/21
title: Schuermann_Figure_2

description: Schuermann_Figure_2 - contains Folders showing Drosophila wing patterning phenotypes as a consequence of Hh or dominant-negative HhC85S over expression under the control of engrailed-Gal4 or patched-Gal4 (described below). Contains Prizm files to quantify the intervein regions between longitudinal wing veins L3-L4 and L2-L3. The obtained ratio serves as a readout for Hh patterning activity. CD8-GFP serves as a control (wild-type patterning).
DOI: 10.5061/dryad.6b058n7/22
title: Schuermann_Figure_3

description: Schuermann_Figure_3 - contains Excel-data on HhC85S multimerization and demonstrates that HhNC85S, a non-lipidated artificial Hh variant, does not act in dominant-negative manner. Contains Prize-Files to quantify unaffected wing patterning in three independently derived HhNC85S lines. The original wing patterns are shown in folders en&gt;HhNC85S and ptc&gt;HhNC85S.
DOI: 10.5061/dryad.6b058n7/23
title: Schuermann_Figure_4

description: Schuermann_Figure_4 - contains files demonstrating that the consecutive N-terminal truncation of HhC85S reverses the dominant negative phenotype. Supplemental folders contain confirming data obtained from independent driver lines en(2)-Gal4 and Hh_Gal4. Unimpaired multimerization as a prerequisite for direct contact with, and dominant-negative suppression of Hh activity are shown as excel-files. HhC85SD86-100 denotes a non-palmitoylated Hh variant that lacks inhibitory N-terminal peptide amino acids 86-100.
DOI: 10.5061/dryad.6b058n7/24
title: Schuermann_Figure_6

description: Schuermann_Figure_6 - contains excel-file showing gel filtration (size exclusion chromatography, or SEC) results. HA-tagged Hh variants are unimpaired in their ability to multimerize.
DOI: 10.5061/dryad.73kq1/27
title: 161018A-1
DOI: 10.5061/dryad.73kq1/28
title: 161018A-2
DOI: 10.5061/dryad.73kq1/29
title: 161018A-3
DOI: 10.5061/dryad.73kq1/30
title: 161018B-1
DOI: 10.5061/dryad.73kq1/31
title: 161018B-2
DOI: 10.5061/dryad.73kq1/32
title: 161018B-3
DOI: 10.5061/dryad.8r7k5/1
title: Figure 1. Full length PrP (PrP-FL) inhibits vesicular fast axonal transport in isolated squid axoplasm.
DOI: 10.5061/dryad.8r7k5/2
title: Figure 2. Prion inhibits fast axonal transport of mitochondria in primary hippocampal cultured neurons.
DOI: 10.5061/dryad.8r7k5/3
title: Figure 3. PrP-induced fast axonal transport inhibition is mediated by Casein kinase 2 activity.
DOI: 10.5061/dryad.8r7k5/4
title: Figure 4. PrP induces detachment of conventional kinesin from membrane cargoes through CK2-mediated phosphorylation of kinesin light chain subunits.
DOI: 10.5061/dryad.8r7k5/5
title: Supplementary Figure 2. PrP Full length (PrP-FL) inhibits fast axonal transport.
DOI: 10.5061/dryad.8r7k5/6
title: Supplementary Figure. 3 The CK2 pharmacological inhibitor DMAT does not interfere with FAT.
DOI: 10.5061/dryad.8r7k5/7
title: Supplementary Figure 5 Data
DOI: 10.5061/dryad.dv322/5
title: Table S1

description: Sample information for all three species
DOI: 10.5061/dryad.m8t72.2
title: Data from: Female dietary bias towards large migratory moths in the European free-tailed bat (Tadarida teniotis)
DOI: 10.5061/dryad.m8t72.2/1.2
title: Sequence Raw Data - Part 1

description: First part of a file containing the raw illumina sequencing data regarding Tadarida teniotis diet described in Mata et al.
DOI: 10.5061/dryad.m8t72.2/2.2
title: Sequence Raw Data - Part 2

description: Second part of a file containing the raw illumina sequencing data regarding Tadarida teniotis diet described in Mata et al.