cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.44pp0/1
title: Wolverine traffic and GPS data

description: Steps from wolverine GPS data in northern Alberta. Steps are lines connecting sequential GPS relocations. “Start” refers to the start point of the step and “End” refers to the end point of the step. For example, “traffic_end” is the traffic volume on the road closest to the end point of the step. The distances to roads are indicated by “road_start” and “road_end”. “Twilight” is the time until civil twilight.  “Used” refers to real steps (coded 1) versus available steps (coded 0). "Cluster" is a group of available data points associated with a used data point (this is needed for conditional logistic regression). "SL_m" is the distance (m) from the start to end point of a step. NOTE: Sensitive GPS locations were removed from this version of the file in accordance with the agreement under which the data were acquired.
DOI: 10.5061/dryad.4cf2p/1
title: ELE_Kagawa_Takimoto

description: The data file contains: (1) Java source code of the individual-based computer simulation in our paper, (2) R codes to produce figures from output files of the simulation, and (3) simulation results that we used to produce figures in our paper.
DOI: 10.5061/dryad.57m0f/10
title: Genotype input file for LFMM analysis (6605 loci)

description: Genotype (6605 SNP loci) input file for 230 individuals of Maccullochella peelii used in the used for LFMM analysis in the study by Harrisson et al "Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity." Contact Katherine Harrisson: katherine.harrisson@gmail.com
DOI: 10.5061/dryad.57m0f/2
title: CSV file with sample information
DOI: 10.5061/dryad.57m0f/3
title: Imputed SNP genotypes input file for RDA
DOI: 10.5061/dryad.57m0f/4
title: Climate and PCNM input file for RDA
DOI: 10.5061/dryad.57m0f/5
title: Version of draft Murray cod reference genome used for read mapping

description: A fasta file of the version of the draft reference genome used for read mapping in the the study by Harrisson et al "Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity." A final version of the genome is now published and publicly available at: http://dx.doi.org/10.5524/100329 Contact Katherine Harrisson katherine.harrisson@gmail.com
DOI: 10.5061/dryad.57m0f/6
title: Input file for STRUCTURE analysis (3650 loci)
DOI: 10.5061/dryad.57m0f/7
title: Input file for STRUCTURE analysis (6605 loci)
DOI: 10.5061/dryad.57m0f/8
title: Candidate SNP regions sequences used in BLAST analysis

description: Sequences for candidate SNP regions in fasta format.
DOI: 10.5061/dryad.5bk4c/1
title: Trinity_andropogon_02122016.fasta

description: Trinity assembly of the Andropogon gerardii transcriptome, assembled Feb 12, 2016.
DOI: 10.5061/dryad.5bk4c/2
title: Trinity_sorghastrum_04102016.fasta

description: Trinity assembly of Sorghastrum nutans transcriptome, assembled Apr 10, 2016.
DOI: 10.5061/dryad.5bk4c/3
title: edgeR_results_andropogon

description: Counts and differential expression for Andropogon.
DOI: 10.5061/dryad.5bk4c/4
title: edgeR_results_both_species

description: Preliminary count data for annotation clustered genes compared between the two species. This information was processed further in the pipeline to account for multiple copy numbers (orthologs, paralogs)
DOI: 10.5061/dryad.5s32v/1
title: Data_Evaluation_Skyline
DOI: 10.5061/dryad.60h3r/2
title: FluctuationTest

description: Fluctuation test dataset
DOI: 10.5061/dryad.60h3r/3
title: Gradient_experiment

description: Gradient experiment
DOI: 10.5061/dryad.6j56v/1
title: Supplementary Table 1. Georeferenced occurrences of chondricthyes

description: Georeferenced occurrences of fossil sharks, rays, and chimaeras from Neogene outcrops along the TPSA. Max: maximum assigned age, Min: minimum assigned age.
DOI: 10.5061/dryad.6j56v/2
title: Supplementary Table 2. Summary of ecological and life-history and oceanographic tolerance

description: Summary of ecological and life-history and oceanographic tolerance used for the analysis of biogeographic dynamics of marine chondrichthyans. Lat_S_fossil: Fossil southern latitude, Lat_S_current: Current southern latitude, Max: Maximum assigned age, Min: Minimum assigned age, Zmax: Maximum depth, SSTmax: Sea Surface Temperature maximum, SSTmin: Sea Surface Temperature minimum, SSTmedian: Sea Surface Temperature median, SST range: Sea Surface Temperature range, Salmax: Maximum salinity, Salmin: Minimum salinity, Salmedian: Median Salinity, Salrange: Salinity range, Ppmax: Primary productivity maximum, Ppmin: Primary productivity minimum, Ppmedian: Primary productivity median, Pprange: Primary productivity range.
DOI: 10.5061/dryad.7g5s4/1
title: Crespi_Data_rs850807_Year.1.2_2017oct24
DOI: 10.5061/dryad.89757/1
title: Immune_03282017_dryad

description: Animal ID with capture date, season, AR and disease status, and health parameters.
DOI: 10.5061/dryad.93pr2/2
title: Genotypes, colonies and geographic location of Rousettus aegyptiacus

description: Genotypes (n=223) from 26 sampling sites of Egyptian fruit bat (Rousettus aegyptiacus) in the Middle East using 18 microsatellites. Lat/Long coordinates (decimal degrees) of each sampling site are also provided.
DOI: 10.5061/dryad.b8d23/1
title: Caribou GPS Location Data

description: csv file containing GPS location data of boreal caribou. Note that data has been cleaned as per the methods outlined in the Journal of Animal ecology paper.
DOI: 10.5061/dryad.b8d23/2
title: Wolf GPS Location Data

description: csv file containing GPS location data of wolves from northeast British Columbia. Note that data have been cleaned as per the methods outlines in the Journal of Animal Ecology paper.
DOI: 10.5061/dryad.bq570/1
title: Data_seed germination_experiment 1

description: Data on proportion germinated seeds in experimental evolution lines monogamous M, polyandrous P, and source S in Collinsia heterophylla.
DOI: 10.5061/dryad.bq570/2
title: Data_flower production_experiment 1

description: Data on flower production in experimental evolution lines monogamous M, polyandrous P, and source S in Collinsia heterophylla. Flower production estimated as number of branches times number of flowers in top branch.
DOI: 10.5061/dryad.bq570/3
title: Data_pollen tube growth rate_experiment 1

description: Data on pollen tube growth rate in experimental evolution lines monogamous M, polyandrous P, and source S in Collinsia heterophylla. Pollen tube growth rate estimated in vitro as a mean for ten replicate pollen tubes after 1h, 45 min.
DOI: 10.5061/dryad.bq570/4
title: Data_seed production_experiment 1

description: Data on seed production in experimental evolution lines monogamous M, polyandrous P, and source S in Collinsia heterophylla following one-donor crosses within and between lines at floral developmental stage 1-4. Seed production estimated as number of seeds per capsule.
DOI: 10.5061/dryad.d5r24/1
title: File 1 - TPC parameters_csv
DOI: 10.5061/dryad.d5r24/2
title: File 2 - Absolute locomotor performance_csv
DOI: 10.5061/dryad.d5r24/3
title: File 3 - Critical temperatures minimum
DOI: 10.5061/dryad.d5r24/4
title: File 4 - Critical temperatures maximum
DOI: 10.5061/dryad.d5r24/5
title: File 5 - Thermal preference
DOI: 10.5061/dryad.d5r24/6
title: Read me_Files contents
DOI: 10.5061/dryad.db470/1
title: Reference transcriptome

description: Reference transcriptome reconstructed from de novo assembly produced with program Trinity by merging isoforms into gene models.
DOI: 10.5061/dryad.db470/2
title: Genotype information for 59 individuals

description: Variant Call Format file
DOI: 10.5061/dryad.db470/3
title: Python script to retain a single, random SNP per gene

description: To run this script, type: python SNPs_oneSNPperContig.py
DOI: 10.5061/dryad.db470/4
title: Python script to run a HWE test

description: This Python script calls a perl script written by Joshua C. Randall (available at: http://www.sph.umich.edu/csg/abecasis/Exact/) to perform an exact Hardy-Weinberg Equilibrium test (Wigginton et al., 2005, Am J Hum Genet, 76: 887-893) for each SNP separately. To run this script, type: python P_value_HWE.py $outfile1.txt
DOI: 10.5061/dryad.db470/5
title: Python script to make an input file for the script P_value_HWE.py

description: To run this script, type: python script_hwe_testing.py $infile.vcf $outfile1.txt
DOI: 10.5061/dryad.kv02g/12
title: Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France

description: This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-16, NOMAM142-16 and SKBPA621-11 might not be reliable: they could have been assigned to the wrong species or may be of low quality (see results in the phylogenetic tree and Table S4, Supplemental Information).
DOI: 10.5061/dryad.kv02g/13
title: Alignment of COI reference sequences available for 33 bat species found in France and recorded in Barcode of Life Database for the 29bp position of the reverse primer

description: This FASTA file contains 693 reference sequences from BOLD corresponding to the 33 bat species found in France. We removed sequences showing less than 29bp for the position of the reverse primer used in our study and/or showing one or more ambiguous base (N). See also Table S4 for a summary.
DOI: 10.5061/dryad.kv02g/14
title: Alignment of the COI haplotypes obtained by Sanger and MiSeq sequencing for the 19 insect species included in the mock communities

description: This FASTA file contains 19 and 20 COI sequences generated by Sanger and Illumina Miseq sequencing respectively. The Sanger sequences correspond to a fragment of 634 to 658bp of the standard COI barcode following the Barcode of Life Consortium. The MiSeq sequences correspond to the 133bp COI minibarcode used in this study. For this latter, only the most abundant variant for each of the 19 samples is provided, except for Forficula lesnei specimen for which an unexpected parasitoid (Triarthria setipennis) was detected and is also provided.
DOI: 10.5061/dryad.m2fr6/1
title: RO Cave Bear Isotopes SI

description: Table S1.  Romanian/Carpathian MIS 3 cave bear and large-bodied mammals carbon (δ13C) and nitrogen (δ15N) stable isotope samples and results. Table S2.  Sites providing comparative European data, all central and western European except Sunghir.  The number for each species indicates the sample size for that species providing stable isotopic data from the site employed in the comparisons
DOI: 10.5061/dryad.mc02p/3
title: Test data for the restricted viewing condition

description: This file contains the 20 choices each bee made during all tests (learning, transfer 1 and transfer 2) in the restricted viewing condition using the y-maze.
DOI: 10.5061/dryad.mr5p1/1
title: SEV_BRANCH_2013_1.0

description: Sevilleta Long-Term Ecological Research Area LTER (34°23′11″N,106°31′46″W; 1,911 m asl) in the Los Pinos Mountains of the Sevilleta National Wildlife Refuge, NEW MEXICO, USA
DOI: 10.5061/dryad.pn30v/1
title: MEC-17-0564
DOI: 10.5061/dryad.q6p50/4
title: ModelPlot.ContinentalN

description: R code for running analyses. Includes analyses and plots. Will output to pdf and output text file.
DOI: 10.5061/dryad.q96g6.2
title: Data from: Nuclear microenvironments modulate transcription from low-affinity enhancers
DOI: 10.5061/dryad.r87pq/1
title: HLA genotypes, ratings of body odors, and further information about donors and raters

description: MHC genotypes (HLA-A, HLA-B, and HLA-DR); evaluation of T-shirt odors (intensity, pleasantness, sexiness, each on a scale from 0 to 10, with 10 = most intense, most pleasant, or most sexy, respectively. The file also provides information about age, use of contraceptive pill, and whether armpits of the donors were shaved or not during the time of the experiments.
DOI: 10.5061/dryad.tv652/1
title: trait_data_Gleason_et_al_2017

description: Leaf, stem, xylem, height, shoot growth data for 44 Australian woody dicotyledon species.  Trait descriptions and units are given in the last column.
DOI: 10.5061/dryad.tv7fk/1
title: Youngetal_TurtleHumerusStrainData_Dryad

description: Humeral strain data for Pseudemys concinna during walking and swimming trials.
DOI: 10.5061/dryad.v8b0s/1
title: Deikumah et al_data

description: Data obtained from point count sampling of birds in forest and different agricultural land types.
DOI: 10.17632/4m4znzc7tg.1
title: Data for: Injury patterns in road traffic victims comparing road user categories: prospective analysis of 811 consecutive cases in the emergency department of a level I institution in a middle-income country.

description: Data base
DOI: 10.17632/5n8v7kw8g3.1
title: Data for: Emotional and attentional responses to stimuli associated with a reward can occur in the absence of expectancy awareness

description: Research Data for the manuscript under review "Attentional responses to stimuli associated with a reward can occur in the absence of knowledge of their predictive values" Mateo Leganes Fonteneau, Ryan Scott, Theodora Duka. School of Psychology, University of Sussex, Falmer, BN1 9QH. UK. T.Duka@sussex.ac.uk; M.Leganes-Fonteneau@sussex.ac.uk Consciousness Centre, University of Sussex, Falmer BN1 9QH UK. R.B.Scott@sussex.ac.uk Sussex Addiction Research and Intervention Centre (SARIC), University of Sussex, Falmer BN1 9QH UK.
DOI: 10.5061/dryad.03v7p/1
title: PolyandryInbreeding header file
DOI: 10.5061/dryad.03v7p/2
title: PolyandryInbreeding cpp file
DOI: 10.5061/dryad.03v7p/3
title: Class Parameters: header file
DOI: 10.5061/dryad.03v7p/4
title: Class Parameters: cpp file
DOI: 10.5061/dryad.03v7p/5
title: Class Traits: header file
DOI: 10.5061/dryad.03v7p/6
title: Class Traits: cpp file
DOI: 10.5061/dryad.03v7p/7
title: Class allelic means
DOI: 10.5061/dryad.03v7p/8
title: Class allelic standard deviations
DOI: 10.5061/dryad.03v7p/9
title: Class mutation standard deviations
DOI: 10.5061/dryad.113v0/6
title: LSW2

description: liana seedling census and canopy height data for the site LSW1, located in Parque Natcional San Lorenzo, Road to San Lorenzo Fort, CTFS site P 1
DOI: 10.5061/dryad.19ph7/1
title: MEE_SPOT_Fig5_ColonyLocomotion

description: Meteorological data and time lapse image recordings (04/02/2013 to 04/07/2013) used to evaluate the influence of wind speed and wind direction on the position of the Atka Bay emperor penguin colony
DOI: 10.5061/dryad.19ph7/2
title: MEE_SPOT_Fig6_SingleLocomotion

description: Video (4008x2672, 5 fps, 60s) recorded on 07/22/2013 at 11:40:47 UTC used to evaluate the movement characteristics of single emperor penguins at the huddle boundaries
DOI: 10.5061/dryad.19ph7/4
title: MEE_SPOT_Fig4_Abundance

description: High resolution panoramic images for 04/01/2014 to 04/21/2014 used to evaluate emperor penguin numbers and arrival pattern
DOI: 10.5061/dryad.20650/1
title: data_oikos_tuzun&stoks_2017

description: Data used for the Tuzun & Stoks 2017 Oikos paper.
DOI: 10.5061/dryad.2hn31/1
title: Data_Dryad

description: This data file contains all of the data, published in Koorem et al. "Relatedness with plant species in native community influences ecological consequences of range expansions". First sheet "Community level biomass" contains above-and belowground biomass (g) of plant communities in each mesocosm. Second sheet "Biomass of individual plants" contains aboveground biomass of each plant individual in each mesocosm. Third sheet "Chemistry of individual plants" contains C and N content of Brassicacea plants in this experiment. Fourth sheet "Herbivore weight" contains the weight and relative growth rate of herbivores in this experiment.
DOI: 10.5061/dryad.4k0j7/1
title: main

description: Nest = Identity of nest box
Idfemale = Identity of female
Year = 1 denotes 2010 and 2 denotes 2011
Date = The date of female body temperature measurement, 1 = 1 May
Femtemp = Female body temperature
Ambientnight = Ambient temperature during the night of female body temperature measurement
Boxnight = The temperature within the nest box
Day = The age of the nestlings when the female body temperature was measured
Exp = Experimental category; 1 = enlarged, 2 = control, 3 = reduced broods
Brood = Number of nestlings in the brood
Femalemass = mass of the female at nestling age 14 days
Femage = female age; 2 = a female in her second calendar year etc.
Nestl mass = The mean mass of the nestlings in a brood
Femaletars = tars of the female at nestling age 14 days
Fem cond = Female condition estimated as the residual mass from the relationship between mass and tarsus length of the females
DOI: 10.5061/dryad.4k0j7/2
title: inout

description: Femid = Female identity
Year = 1 denotes 2010 and 2 denotes 2011
Exp = Experimental category; 1 = enlarged, 2 = control, 3 = reduced broods
Inout = Denotes if the female is in or out of the box during the second night visit. 1 = in, 2 = out
Age = female age; 2 = a female in her second calendar year etc.
NestT = The temperature within the nest box
DOI: 10.5061/dryad.57m0f/11
title: Input file for LFMM analysis (env variables)

description: Contains the environmental data used in LFMM analysis in the study by Harrisson et al "Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity." Column 1 is PC1 and column 2 is PC2. Contact Katherine Harrisson: katherine.harrisson@gmail.com
DOI: 10.5061/dryad.57m0f/12
title: Genotype (6605 loci) input file for TASSEL analysis

description: A VCF formatted file (sorted for TASSEL) that includes genotype information (6605 SNP loci) for 230 individuals of Maccullochella peelii used in TASSEL analysis.
DOI: 10.5061/dryad.57m0f/13
title: Phenotypes and covariates input for TASSEL
DOI: 10.5061/dryad.57m0f/9
title: List of SNPs removed in LD thinning

description: The file Harrisson_etal_ListRemovedSNPs.txt is a list of SNP loci removed during LD thinning in the study by Harrisson et al "Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity." 
Contact Katherine Harrisson: katherine.harrisson@gmail.com
DOI: 10.5061/dryad.5bk4c/5
title: edgeR_results_sorghastrum

description: Count and differential expression data for Sorghastrum.
DOI: 10.5061/dryad.5bk4c/6
title: Kristiansson_analysis_results

description: Accounts for multiple different gene copy numbers in differential expression.
DOI: 10.5061/dryad.5bk4c/7
title: raw_data
DOI: 10.5061/dryad.5bk4c/8
title: all_paralogs_bothspecies

description: Counts of paralogs/orthologs found in each gene annotation group for each species, not filtered by significance.
DOI: 10.5061/dryad.5d926/1
title: FMR1 locus, Fibroblast cell line established from individual with fragile X syndrome, double-stranded DNA methylation patterns

description: Batchstamp- and barcode-authenticated, double-stranded DNA sequence sets collected from the human loci indicated, using hairpin-bisulfite PCR.
DOI: 10.5061/dryad.5d926/2
title: FMR1, IMR90 Fibroblast cell line, double-stranded DNA methylation patterns
DOI: 10.5061/dryad.5d926/3
title: Line 1 locus, FSH iPS, Differentiated, double-stranded DNA methylation patterns
DOI: 10.5061/dryad.5d926/4
title: Line 1, FSH iPS, Undifferentiated, double-stranded DNA methylation patterns
DOI: 10.5061/dryad.6p823/1
title: raw Data

description: These is the complete raw data file for survival rates of eggs and hatchlings under control, heat and desiccation/food stress treatment.
DOI: 10.5061/dryad.6v29b/1
title: Vedder & Bouwhuis 2017 Oikos

description: Data used for models presented in:
Heterogeneity in individual quality in birds: overall patterns and insights from a study on common terns
by Vedder, O. & Bouwhuis, S.
DOI: 10.5061/dryad.7c4s5/1
title: Table S1

description: Taqman primer and probe sequences for RT-qPCR mRNA integrity assay targeting Actb (NM_007393.5)
DOI: 10.5061/dryad.7c4s5/2
title: Table S2

description: FFPE RNA fragmentation duration for library preparation
DOI: 10.5061/dryad.7c4s5/3
title: Table S3

description: RNA yield and RNA integrity numbers
DOI: 10.5061/dryad.7c4s5/4
title: Table S4

description: Summary of Actb RNA copies by amplicon across different preservation conditions
DOI: 10.5061/dryad.7c4s5/5
title: Table S5

description: RNA-sequencing quality summary for additional metrics that A) demonstrate no chemical exposure related interaction with preservation groups and B) those that do
DOI: 10.5061/dryad.7c4s5/6
title: Table S6

description: Summary of total gene counts and quantity of unique genes identified prior to count normalization
DOI: 10.5061/dryad.7c4s5/7
title: Table S7

description: All significant differentially expressed genes identified between preservation groups
DOI: 10.5061/dryad.7c4s5/8
title: Table S8

description: Significant differentially expressed genes list from each preservation group overlapping with FR
DOI: 10.5061/dryad.7sd66/1
title: Supplementary Text

description: Additional information on geological localities and conodont distribution.
DOI: 10.5061/dryad.7sd66/2
title: Supplementary Table 1 - Conodont counts

description: Counts of individual conodonts in each sample
DOI: 10.5061/dryad.7sd66/3
title: Supplementary table 2 - diversity

description: Alpha and gamma diversity for each unit analysed in the study
DOI: 10.5061/dryad.7sd66/4
title: Supplementary table 3 - turnover

description: Turnover (beta diversity) between each pair of units analysed in the study
DOI: 10.5061/dryad.8741v/1
title: Shakyo2012_English(aggregate the age)
DOI: 10.5061/dryad.87hr5/1
title: Data from: Relationship between socioeconomic status and Human Immunodeficiency Virus infection: findings from a survey in the Free State and Western Cape Provinces of South Africa

description: The dataset contains data on HIV status, and sociodemographic variables. These data were obtained from a community survey among women of reproductive age attending antenatal clinics in 2 provinces in South Africa.
DOI: 10.5061/dryad.908ds/1
title: DATA_Lodjak_Magi_2017

description: Glutathione peroxidase (GPx) activity data of free-living pied flycatcher (Ficedula hypoleuca) nestlings. Data is in an Excel file.
DOI: 10.5061/dryad.9sk4v/1
title: SI 1 - R code to download data from Xeno Canto

description: R functions (commented using roxygen2) to download data from Xeno Canto
DOI: 10.5061/dryad.9sk4v/2
title: SI 2 - Ruby script to download a recording from Xeno Canto

description: Documented within the file; can get help on how to run it from the command line with something like "ruby supplement_2.rb --help"
DOI: 10.5061/dryad.9sk4v/3
title: SI 3 - Ruby script to download lots of recordings from Xeno-Canto

description: Ruby script to download recordings for many species from Xeno Canto. Can get help on how to run over the command line with something like "ruby supplement_3.rb --help"
DOI: 10.5061/dryad.9sk4v/4
title: SI 4 - Birdsong metrics for all downloaded recordings

description: Xeno-Canto ID for each recording is listed
DOI: 10.5061/dryad.b8d23/3
title: Black Bear GPS Location Data

description: csv file containing GPS location data of black bears in northeast British Columbia.  Data have been cleaned as per the methods outlined in the Journal of Animal Ecology paper.