cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.48rv3bh
title: Data from: Correlated divergence of female and male genitalia in replicated lineages with ongoing ecological speciation

description: Divergence of genital traits among lineages has the potential to serve as
 a reproductive isolating barrier when copulation, insemination, or
 fertilization are inhibited by incompatibilities between female and male
 genitalia. Despite widespread evidence for genital trait diversity among
 closely related lineages and coevolution of female and male genitalia
 within lineages, few studies have investigated genital evolution during
 the early stages of speciation. We quantified genital variation in
 replicated population pairs of Poecilia mexicana with ongoing ecological
 speciation between sulfidic (H2S-containing) and nearby non-sulfidic
 habitats. These analyses revealed rapid and correlated divergence of
 female and male genitalia across evolutionarily independent population
 pairs exposed to divergent selection regimes. Both sexes exhibited
 convergent evolution of genital traits among populations inhabiting
 similar habitat types. Our results demonstrate that genital evolution can
 occur during the early stages of speciation-with-gene-flow, potentially as
 a result of variation in the intensity of sexual conflict among
 populations. Our results suggest genitalia may contribute to early stages
 of divergence, and challenge the generality of previously suggested
 mechanisms of genital evolution in poeciliids.
description: Male Genitalia
 DataLandmarks from geometric
 morphometrics for analysis of wild-caught male
 genitaliaFemale
 DataMeasurements of female
 Poecilia mexicana urogenital aperture morphologyFemale Genital
 AnalysisR code for analyses used
 for wild-caught female genital morphological variationMale Genital
 AnalysisR code to perform
 analyses used for gonopodium shape variationFemaleGenital_EMMsEstimated Marginal Means from MANCOVA for female genital morphological variationMaleGenitalEMMsEstimated Marginal Means from MANCOVA for male gonopodium morphological variationFSTPairwise Fst among P. mexicana populationshabitatHabitat matrix for partial mantel testGenitalMantelR code to perform partial mantel tests for correlations among female and male genital traits
DOI: 10.15468/dl.kaxzbu
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Astragalus membranaceus mongholicus"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001678-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.68s80k7
title: Data from: Clone configuration and spatial genetic structure of two Halophila ovalis populations with contrasting internode lengths

description: Fine-scale spatial genetic structure (SGS) is predominantly determined by
 gene flow. While sexually reproducing plants can disperse their genes
 through pollen and seed grains, clonal plants can additionally disperse
 genes through clonal growth. Plants’ clonal reproduction strategy,
 however, often varies within and between species. Still, the effect of
 differential clonal reproduction strategy on fine-scale SGS remains
 somewhat unclear. Halophila ovalis is a fast-growing clonal seagrass,
 whose internode length (which defines a species’ clonal reproduction
 strategy) varies among populations. Using eight polymorphic
 microsatellites, here we compare the genetic diversity, clonal structure
 and fine-scale SGS of two H. ovalis populations with contrasting internode
 lengths (Yingluo versus Xialongwei populations). We found moderate to high
 genotypic and allelic richness and heterozygosities in both populations.
 Compared to Xialongwei population, genetic and genotypic diversity was
 significantly lower in Yingluo population. Although their internode length
 was relatively short, clones of Yingluo population spread farther than
 those of Xialongwei population. Sexual-to-vegetative dispersal variance
 ratios were 34.6 and 445.5 in Yingluo and Xialongwei populations,
 respectively. In both populations, clonal growth significantly intensified
 the SGS, especially in short distance classes. The SGS at small distance
 classes were weaker in Yingluo than Xialongwei, in part, due to more
 intermingled distribution of genets and more extensive clonal expansion in
 the former population. Our results indicate that vegetative dispersal
 variance/distance, rather than internode length, plays a crucial role in
 shaping the fine-scale genetic structure.
description: data file (Halophila
 ovalis)
DOI: 10.5061/dryad.dm97908
title: Data from: Influence of genetic drift on patterns of genetic variation: the footprint of aquaculture practices in Sparus aurata (Teleostei: Sparidae)

description: Aquaculture finfish production based on floating cage technology has
 raised increasing concerns on the genetic integrity of natural
 populations. Accidental mass escapes can induce the loss of genetic
 diversity in wild populations by increasing genetic drift and inbreeding.
 Farm escapees likely represent an important issue in the gilthead sea
 bream, which accounted for 76.4% of total escapes recorded in Europe
 during a three-year survey. Here, we investigated patterns of genetic
 variation in farmed and wild populations of gilthead sea bream from the
 Western Mediterranean, a region that faced a long-history of gilthead sea
 bream farming. We focused our attention on the role that genetic drift may
 play in shaping these patterns. Results based on microsatellite markers
 matched those observed in previous studies. Farmed populations showed
 lower levels of genetic diversity than wild populations and were
 genetically divergent from their wild counterparts. Overall, farmed
 populations showed the smallest population effective size and increased
 levels of relatedness compared to wild populations. The small broodstock
 size coupled with breeding practices that may favor the variance in
 individual reproductive success likely boosted genetic drift. This factor
 appeared to be a major driver of the genetic patterns observed in the
 gilthead sea bream populations analysed in the present study. These
 results further stress the importance of recommendations aimed at
 maintaining broodstock sizes as large as possible and equal sex-ratios
 among breeders, as well as avoiding unequal contributions among parents
description: Aquaculture footprint on
 genetic variationThis data package
 includes the microsatellite genotype datasets as well as the files and the
 scripts needed to reproduce the analyses and the figures of the paper that
 were obtained using the R 3.5.2 statistical environmentCossu_Sparus_aurata_2019.zip
DOI: 10.5061/dryad.601k960
title: Data from: Teachers’ involvement and students’ self-efficacy: keys to achievement in higher education

description: We study the relative importance of the three dimensions of
 need-supportive teaching (NST) and students’ self-efficacy to gain new
 knowledge about students’ achievement in higher education. NST assumes
 that teachers are key to the motivation of students, providing autonomy
 support, structure (support of competence), and involvement (support of
 relatedness). In turn, self-efficacy raises students’ confidence in their
 ability to succeed in academic tasks. Drawing on 86,000 records of
 teaching evaluations by students at the University of Girona (Spain), we
 present evidence that teachers’ involvement and students’ self-efficacy
 are the two elements most strongly and positively related to achievement.
 Students obtain higher marks when they believe that their teachers are
 dependable and available to offer resources, and when they feel capable of
 organizing and implementing the courses of action necessary to acquire
 knowledge. We also find that students’ experience of autonomy support and
 structure are negatively (or not) correlated with achievement. Subgroup
 analyses also indicate that students have different needs in different
 knowledge areas.
description: Teaching evaluations by
 students at the University of Girona (2014-2016)The data set contains 11
 variables from which one can reproduce the results of the aforementioned
 paper. The variables can be read as follows: nota: achievement, values
 from 0 to 10 preg1: question 1 in the questionnaire, labelled as STRUC_1,
 values from 1 to 5 preg2: question 2 in the questionnaire, labelled as
 EFFICACY_1, values from 1 to 5 preg3: question 3 in the questionnaire,
 labelled as AUTON_1, values from 1 to 5 preg4: question 4 in the
 questionnaire, labelled as STRUC_2, values from 1 to 5 preg5: question 5
 in the questionnaire, labelled as EFFICACY_2, values from 1 to 5 preg6:
 question 6 in the questionnaire, labelled as INVOL_1, values from 1 to 5
 idassig: subject identification number year: academic year, values from
 2014 to 2016 pdi: lecturer identification number ciencia: area of
 knowledge =1, Humanities =2, Social Sciences =3, Sciences =4, Life
 Sciences =5, Medical Sciences =6, Arquitecture /
 EngineeringquestionnaireUdG.xlsx
DOI: 10.5061/dryad.d7p497r
title: Data from: Soil microbiomes underlie population persistence of an endangered plant species

description: Microbiomes can dramatically alter individual plant performance, yet how
 these effects influence higher order processes is not well resolved. In
 particular, little is known about how microbiome effects on individual
 plants alter plant population dynamics, a question critical to imperiled
 species conservation. Here, we integrate bioassays, multidecadal
 demographic data, and integral projection modeling to determine how the
 presence of the natural soil microbiome underlies plant population
 dynamics. Simulations indicated that the presence of soil microbiomes
 boosted population growth rates (λ) of the endangered Hypericum cumulicola
 by 13% on average, the difference between population growth versus decline
 in 76% of patches. The greatest benefit (47% increase in λ) occurred in
 low nutrient, high elevation habitats, suggesting that the soil microbiome
 may help expand H. cumulicola’s distribution to include these stressful
 habitats. Our results demonstrate that soil microbiomes can significantly
 affect plant population growth and persistence, and support the
 incorporation of soil microbiomes into conservation planning. plant
 population growth and persistence, and support the incorporation of soil
 microbiomes into conservation planning.
description: bioassay_resultsGermination and size results from bioassay
DOI: 10.5061/dryad.40sf920
title: Data from: Uncovering a mitochondrial unfolded protein response in corals and its role in adapting to a changing world

description: The Anthropocene will be characterized by increased environmental
 disturbances, leading to the survival of stress tolerant organisms
 particularly in the oceans where novel marine diseases and elevated
 temperatures are re-shaping ecosystems. These environmental changes
 underscore the importance of identifying mechanisms which promote stress
 tolerance in ecologically important non-model species such as
 reef-building corals. Mitochondria are central regulators of cellular
 stress and have dedicated recovery pathways including the mitochondrial
 unfolded protein response, which increases the transcription of protective
 genes promoting protein homeostasis, free radical detoxification, and
 innate immunity. In this investigation, we identify a mitochondrial
 unfolded protein response in the endangered Caribbean coral Orbicella
 faveolata, by performing in vivo functional replacement using a
 transcription factor (Of-ATF5) originating from a coral in the model
 organism Caenorhabditis elegans. In addition, we use RNA-seq network
 analysis and transcription factor binding predictions to identify a
 transcriptional network of genes likely regulated by Of-ATF5 which is
 induced during immune challenge and temperature stress. Overall, our
 findings uncover a conserved cellular pathway which may promote the
 ability of reef-building corals to survive increasing levels of
 environmental stress.
description: Step1_WGCNAThis zip file contains all of the required R.code to run the WGCNA analysis used to identify the UPRmt of O. faveolata.Step2_GoMWUThis zip folder contains the gene_ids and the module membership scores for the identified O. faveolata UPRmt genes, as well as the GO terms for those genes.Step3_Transcription_factors
DOI: 10.15468/dl.9c9ad6
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akodon juninensis"
 ]
}

 The dataset includes 225 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001680-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5c4c6h8
title: Data from: Chiral Majorana fermion modes in a quantum anomalous Hall insulator–superconductor structure

description: Majorana fermion is a hypothetical particle that is its own antiparticle.
 We report transport measurements that suggest the existence of
 one-dimensional chiral Majorana fermion modes in the hybrid system of a
 quantum anomalous Hall insulator thin film coupled with a superconductor.
 As the external magnetic field is swept, half-integer quantized
 conductance plateaus are observed at the locations of magnetization
 reversals, giving a distinct signature of the Majorana fermion modes. This
 transport signature is reproducible over many magnetic field sweeps and
 appears at different temperatures. This finding may open up an avenue to
 control Majorana fermions for implementing robust topological quantum
 computing.
description: Data_ChiralMF-20190428Supple-Data_ChiralMF-20190428.2
DOI: 10.5061/dryad.jh5n738
title: Data from: Allocation of invasive plant management expenditures for conservation: lessons from Florida, USA

description: Although the ecological impacts of biological invasions are well studied,
 comprehensive analyses of spending on invasive species management are
 lacking. Such analyses could inform both effective resource allocation and
 management planning. We evaluated long-term invasive plant management
 expenditures and their potential geographic, economic, and ecological
 drivers for freshwater and terrestrial conservation areas in Florida, USA.
 Average expenditures for managing invaders were approximately US$45M
 annually, with over 90% of funding provided by the state. Our model showed
 that expenditures were best predicted by the prevalence of waterways and
 abundance of invaders, indicating that funding was allocated towards asset
 protection in highly-invaded aquatic and terrestrial habitats. Higher
 spending was directly correlated with reduced area invaded for the
 costliest invader (Hydrilla verticillata, ~$10M/year), demonstrating
 management efficacy and constructive use of resources. Our study
 highlights that significant funding is required to manage plant invaders
 in Florida and that greater funding would likely limit the extent of
 invasions. Additional analyses of management cost-effectiveness for
 Florida and other regions would benefit from consistent collection and
 reporting of high-resolution management data. Given the exponential rate
 of spread of many invaders, additional and sustained management funding is
 needed for early detection and rapid, effective control of invasive
 species.
description: IPM_model_dataCounty level invasive plant management expenditures and geographic, ecological, and economic demographics to assess the predictors of expenditures on invasive plant management at the county level.
DOI: 10.5061/dryad.2108pm6
title: Data from: Distal-less activates butterfly eyespots consistent with a reaction diffusion process

description: Eyespots on the wings of nymphalid butterflies represent colorful examples
 of pattern formation, yet the developmental origins and mechanisms
 underlying eyespot center differentiation are still poorly understood.
 Using CRISPR-Cas9 we re-examine the function of Distal-less (Dll) as an
 activator or repressor of eyespots, a topic that remains controversial. We
 show that the phenotypic outcome of CRISPR mutations depends upon which
 specific exon is targeted. In Bicyclus anynana, exon 2 mutations are
 associated with both missing and ectopic eyespots and also exon-skipping.
 Exon 3 mutations, which do not lead to exon-skipping, produce only null
 phenotypes including missing eyespots, lighter wing coloration and loss of
 scales. Reaction-diffusion modeling of Dll function, using Wnt and Dpp as
 candidate morphogens, accurately replicates these complex crispant
 phenotypes. These results provide new insight into the function of Dll as
 a potential activator of eyespot development, scale growth, and
 melanization, and suggest that the tuning of Dll expression levels can
 generate a diversity of eyespot phenotypes, including their appearance on
 the wing.
description: Bicyclus_anynana_Wildtype_dorsalEyespots image of Bicyclus anynana Wildtype dorsal sideBicyclus_anynana_Wildtype_VentralEyespots image of Bicyclus anynana Wildtype dorsal sideexon 2 mutantsImages for Exon 2 mutantsexon 3 mutantsImages for Exon 3 mutants
DOI: 10.5061/dryad.8c4c359
title: Data from: Estimated six percent loss of genetic variation in wild populations since the industrial revolution

description: Genetic variation is fundamental to population fitness and adaptation to
 environmental change. Human activities are driving declines in many wild
 populations and could have similar effects on genetic variation. Despite
 the importance of estimating such declines, no global estimate of the
 magnitude of ongoing genetic variation loss has been conducted across
 species. By combining studies that quantified recent changes in genetic
 variation across a mean of 27 generations for 91 species, we
 conservatively estimate a 5.4-6.5% decline in within-population genetic
 diversity of wild organisms since the industrial revolution. This loss has
 been most severe for island species, which show a 30% average decline. We
 identified taxonomic and geographic gaps in temporal studies that must be
 urgently addressed. Our results are consistent with single time-point
 meta-analyses, which indicated that genetic variation is likely declining.
 However, our results represent the first confirmation of a global decline,
 and provide an estimate of the magnitude of the genetic variation lost
 from wild populations.
description: Leigh_et.al.data_used_in_synthesisGenetic diversity estimates per study included in the synthesis. References for the original studies used are included in the spreadsheet.
DOI: 10.15468/dl.sqyuwj
title: Occurrence Download

description: A dataset containing 6631476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)"
 ]
}

 The dataset includes 6631476 records from 3941 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001654-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17548444
title: Dataset for: The evolving landscape of artificial intelligence in patient education: a bibliometric knowledge mapping study

description: This repository contains the associated data and visualization files for the bibliometric analysis paper titled, "The evolving landscape of artificial intelligence in patient education: a bibliometric knowledge mapping study." The study analyzed 837 documents retrieved and screened from the Web of Science Core Collection (WOSCC), published between January 1, 2016, and July 27, 2025. This repository includes:



Cleaned Dataset: The standardized and deduplicated dataset used for the analysis.

Detailed Search Strategy: The complete search query used in the WOSCC database.

Network Visualizations: The configuration files, project files, and generated network maps for RStudio (Bibliometrix) and CiteSpace analyses.
DOI: 10.5281/zenodo.17548443
title: Dataset for: The evolving landscape of artificial intelligence in patient education: a bibliometric knowledge mapping study

description: This repository contains the associated data and visualization files for the bibliometric analysis paper titled, "The evolving landscape of artificial intelligence in patient education: a bibliometric knowledge mapping study." The study analyzed 837 documents retrieved and screened from the Web of Science Core Collection (WOSCC), published between January 1, 2016, and July 27, 2025. This repository includes:



Cleaned Dataset: The standardized and deduplicated dataset used for the analysis.

Detailed Search Strategy: The complete search query used in the WOSCC database.

Network Visualizations: The configuration files, project files, and generated network maps for RStudio (Bibliometrix) and CiteSpace analyses.
DOI: 10.15468/dl.zxak82
title: Occurrence Download

description: A dataset containing 4588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erythemis plebeja"
 ]
}

 The dataset includes 4588 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006469-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30719162
title: Capturing coherent pseudorotation through conical intersection in photoionized benzene

description: Vibronic coupling and coherence are crucial in the charge and energy transfer of photoexcited molecules. Here we investigate the coupled electron-nuclear dynamics of the photoionized benzene molecule using the time-resolved Coulomb-explosion imaging method. An unusual long-period oscillation is experimentally observed in the ion yields of the dication, as well as the Coulomb explosion channels. Quantum dynamics simulations reveal that this ~600 fs oscillation, which notably exceeds the period of any vibrational modes, originates from pseudorotation of the benzene cation. This motion arises from quantum beating between two coherent vibronic states of the benzene molecule coupled via the Jahn-Teller effect around the conical intersection. The structural evolution of the benzene cation via pseudorotation is visualized by the time-resolved momentum imaging in the three-body Coulomb explosion channel. Our work offers a comprehensive characterization of coherent vibronic dynamics of the benzene cation and demonstrates the power of the time-resolved Coulomb-explosion imaging for unraveling coupled electronic and nuclear motions in aromatic molecules.