cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4534391
title: Supplementary Files from: The leukotriene receptor antagonist Montelukast ameliorates neuroinflammation and improves cognition in a mouse model of Alzheimer's disease

description: Supplementary table 1: Significantly downregulated biological processes by MTK treatment Supplementary table 2: Genes related to the biological process "glial cell activation" (Top Hit from Sup table 1) Supplementary table 3: Significantly upregulated biological processes by MTK treatment Supplementary table 4: Antibodies and dilutions Supplementary table 5: Overlapping genes from Fig 3 A Tab 6: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK Tab 7: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK - females only Tab 8: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK - males only
DOI: 10.5281/zenodo.4534390
title: Supplementary Files from: The leukotriene receptor antagonist Montelukast ameliorates neuroinflammation and improves cognition in a mouse model of Alzheimer's disease

description: Supplementary table 1: Significantly downregulated biological processes by MTK treatment Supplementary table 2: Genes related to the biological process "glial cell activation" (Top Hit from Sup table 1) Supplementary table 3: Significantly upregulated biological processes by MTK treatment Supplementary table 4: Antibodies and dilutions Supplementary table 5: Overlapping genes from Fig 3 A Tab 6: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK Tab 7: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK - females only Tab 8: Raw Data from RNA Sequence Analysis: hippocampal tissue from 5xFAD mice vehicle vs 10mg/kg/d MTK - males only
DOI: 10.6084/m9.figshare.12271292.v13
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - December 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-May-13, updated 2020-Jan-12.<br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1616Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>Rules: If results are produced with this catalog for peer-reviewed scientific publications,please contact christian.moestl@oeaw.ac.at for co-authorships.<br>
DOI: 10.5523/bris.128vc9hwe7zgm29csj8a84oca2
title: The creation of a neural network based capability profile to enable generative design and the manufacture of functional FDM parts

description: Tensile test data and analysis
DOI: 10.15468/8ykrx9
title: A new species of the genus Larsia Fittkau (Diptera: Chironomidae) from India with cladistic analysis and a world key to the known males

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mondal, Debarshi, Mukherjee, Tuhar, Hazra, Niladri (2020): A new species of the genus Larsia Fittkau (Diptera: Chironomidae) from India with cladistic analysis and a world key to the known males. Zootaxa 4859 (3): 342-354, DOI: https://doi.org/10.11646/zootaxa.4859.3.2
DOI: 10.15468/acfybh
title: New species of Culex (Culiciomyia) (Diptera: Culicidae) from Talangaye Forest in Cameroon and descriptions and identification keys for males of the Afrotropical species of the subgenus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cornel, Anthony John, Mayi, Marie Paul Audrey, Kowo, Cyril, Foncha, David, Andongma, Esack, Anong, Damian Nota, Elad, Mirabel, Djomo, Charlene, Tchuinkam, Timoleon, Brisco, Katherine K., Sehgal, Ravinder (2020): New species of Culex (Culiciomyia) (Diptera: Culicidae) from Talangaye Forest in Cameroon and descriptions and identification keys for males of the Afrotropical species of the subgenus. Zootaxa 4858 (4): 451-506, DOI: https://doi.org/10.11646/zootaxa.4858.4.1
DOI: 10.5281/zenodo.4534368
title: Disordered information processing dynamics in experimental epilepsy

description: Abstract Neurological disorders share common high-level alterations, such as cognitive deficits, anxiety, and depression. This raises the possibility of fundamental alterations in the way information conveyed by neural firing is maintained and dispatched in the diseased brain. Using experimental epilepsy as a model of neurological disorder we tested the hypothesis of altered information processing, analyzing how neurons in the hippocampus and the entorhinal cortex store and exchange information during slow and theta oscillations. We equate the storage and sharing of information to low level, or primitive, information processing at the algorithmic level, the theoretical intermediate level between structure and function. We find that these low-level processes are organized into substates during brain states marked by theta and slow oscillations. Their internal composition and organization through time are disrupted in epilepsy, loosing brain state-specificity, and shifting towards a regime of disorder in a brain region dependent manner. We propose that the alteration of information processing at an algorithmic level may be a mechanism behind the emergent and widespread co-morbidities associated with epilepsy, and perhaps other disorders.
description: Partial data for this publication. For full data set please contact Wesley Clawson.
DOI: 10.6084/m9.figshare.13907348.v1
title: Collection of putative promoter sequence of genes on different chromosomes of the human genome

description: Promoter serve as communication link between protein-based regulatory control systems and nucleotide-based sequence determinants that regulate gene expression. As such, promoters should be relatively well characterised as stretches of DNA sequence with transcription factor binding motifs should be candidates for promoter sequence for specific genes. But, the perennial problem of defining the start and end nucleotide of promoter remains unresolved, and promoter sequences for both prokaryotic and eukaryotic systems remain poorly defined. This work took the oft-used approach of estimating promoter sequence of genes by characterising 800 base pair sequence upstream of the gene start site as putative promoter sequence for all genes in the human genome. Using an in-house MATLAB genome analysis software, the start site and gene sequence of each gene in the human genome is determined, which provides foundational knowledge for estimating putative promoter sequence of each gene in the human genome. Defined in this way, putative promoter sequence should contain extraneous elements, but, these promoter sequences remain useful for initial characterisation of the functional basis of specific promoter of particular gene such as understanding the repertoire of transcription factors that bind to each promoter, as well as their qualitative binding affinity. The collection of promoter sequence of each gene in the human genome reported herein is catalogued based on each chromosome in the karyotype of humans, and may be useful for understanding possible chromosomal specificities in the sequence of promoters in the human genome.
DOI: 10.6084/m9.figshare.13907348
title: Collection of putative promoter sequence of genes on different chromosomes of the human genome

description: Promoter serve as communication link between protein-based regulatory control systems and nucleotide-based sequence determinants that regulate gene expression. As such, promoters should be relatively well characterised as stretches of DNA sequence with transcription factor binding motifs should be candidates for promoter sequence for specific genes. But, the perennial problem of defining the start and end nucleotide of promoter remains unresolved, and promoter sequences for both prokaryotic and eukaryotic systems remain poorly defined. This work took the oft-used approach of estimating promoter sequence of genes by characterising 800 base pair sequence upstream of the gene start site as putative promoter sequence for all genes in the human genome. Using an in-house MATLAB genome analysis software, the start site and gene sequence of each gene in the human genome is determined, which provides foundational knowledge for estimating putative promoter sequence of each gene in the human genome. Defined in this way, putative promoter sequence should contain extraneous elements, but, these promoter sequences remain useful for initial characterisation of the functional basis of specific promoter of particular gene such as understanding the repertoire of transcription factors that bind to each promoter, as well as their qualitative binding affinity. The collection of promoter sequence of each gene in the human genome reported herein is catalogued based on each chromosome in the karyotype of humans, and may be useful for understanding possible chromosomal specificities in the sequence of promoters in the human genome.
DOI: 10.5281/zenodo.4534372
title: 4_1_iBET_Dataset1stPaper_v0_2020-10-31

description: Dataset of paper entitled "Development of highly selective composite polymeric membranes for Li<sup>+</sup>/ Mg<sup>2+</sup> separation" published at Journal of Membrane Science 620 (2021) 118891.
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 869467 (SEArcularMINE). This work was supported by the Associate Laboratory for Green Chemistry- LAQV, which is financed by Portuguese national funds from FCT/MCTES (UID/QUI/50006/2019). This work was also supported by "Programa Operacional Regional de Lisboa, na componente FEDER" and "Fundacao para a Ciencia e Tecnologia, I.P." through research project PTDC/EQU-EPQ/29579/2017. S. Pawlowski acknowledges Fundacao para a Ciencia e Tecnologia, I.P. for his contracts CEECIND/01617/2017 and CEECIND/00340/2018. iNOVA4Health – UIDB/Multi/04462/2020, a program financially supported by Fundacao para a Ciencia e Tecnologia is acknowledged. Funding from INTERFACE Programme, through the Innovation, Technology and Circular Economy Fund (FITEC), is also gratefully acknowledged. The authors acknowledge Professor Vítor D. Alves, from Instituto Superior de Agronomia, Universidade de Lisboa, for the support to analysing mechanical properties.
DOI: 10.5281/zenodo.4534371
title: 4_1_iBET_Dataset1stPaper_v0_2020-10-31

description: Dataset of paper entitled "Development of highly selective composite polymeric membranes for Li<sup>+</sup>/ Mg<sup>2+</sup> separation" published at Journal of Membrane Science 620 (2021) 118891.
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 869467 (SEArcularMINE). This work was supported by the Associate Laboratory for Green Chemistry- LAQV, which is financed by Portuguese national funds from FCT/MCTES (UID/QUI/50006/2019). This work was also supported by "Programa Operacional Regional de Lisboa, na componente FEDER" and "Fundacao para a Ciencia e Tecnologia, I.P." through research project PTDC/EQU-EPQ/29579/2017. S. Pawlowski acknowledges Fundacao para a Ciencia e Tecnologia, I.P. for his contracts CEECIND/01617/2017 and CEECIND/00340/2018. iNOVA4Health – UIDB/Multi/04462/2020, a program financially supported by Fundacao para a Ciencia e Tecnologia is acknowledged. Funding from INTERFACE Programme, through the Innovation, Technology and Circular Economy Fund (FITEC), is also gratefully acknowledged. The authors acknowledge Professor Vítor D. Alves, from Instituto Superior de Agronomia, Universidade de Lisboa, for the support to analysing mechanical properties.
DOI: 10.5281/zenodo.4518372
title: Biases in demographic modelling affect our understanding of recent divergence

description: This repository incorporates data and scripts associated with the paper "Biases in demographic modelling affect our understanding of recent divergence" published in Molecular Biology and Evolution (doi: 10.1093/molbev/msab047 ). Included in the repository are the following compressed folders: Alignment_and_SNP_Calling.zip. Contains bioinformatic pipelines to align raw data (available in GenBank from Bioproject PRJNA699405) and generate BAM and VCF files necessary for further analyses. Several VCF files are also included. SFS.zip. Contains scripts to generate the 2d-SFS for demographic analyses of empirical data. Includes also input SNP files for <em>moments</em>. pi_dxy.zip. This compressed folder contains a bash script to generate 1d-SFS and 2d-SFS in windows across the genome, and R scripts to derive summary statistics from those (\(\pi\), \(\theta\), \(d_{xy}\), Tajima's \(D\)) as well as the results (SFS and summary statistics in windows) PCANGSD.zip. Contains arguments to generate the input file (in beagle format) for PCangsd, results from PCangsd (covariance matrix and selection test statistics) and a R script to plot a PCA. Stairway_Plots.zip. Contains blueprint files to run StairwayPlots and results. Simulations.zip. Contains commands to run all simulations, <em>dadi</em> and <em>moments</em> models for inference, results and some R scripts to reproduce plots. Moments_models.zip. Contains the one-population and two-population models for <em>moments </em>that we designed for this study. Moments_results.zip. Contains results from demographic models optimized for the empirical data, as well as scripts and results from Likelihood Ratio Tests and estimation of uncertainties using the Godambe Information Matrix. Please note that most of these scripts and models are also available from GitHub (https://github.com/Nopaoli/Demographic-Modelling) .
DOI: 10.5281/zenodo.4518371
title: Biases in demographic modelling affect our understanding of recent divergence

description: This repository incorporates data and scripts associated with the paper "Biases in demographic modelling affect our understanding of recent divergence" published in Molecular Biology and Evolution (doi: 10.1093/molbev/msab047 ). Included in the repository are the following compressed folders: Alignment_and_SNP_Calling.zip. Contains bioinformatic pipelines to align raw data (available in GenBank from Bioproject PRJNA699405) and generate BAM and VCF files necessary for further analyses. Several VCF files are also included. SFS.zip. Contains scripts to generate the 2d-SFS for demographic analyses of empirical data. Includes also input SNP files for <em>moments</em>. pi_dxy.zip. This compressed folder contains a bash script to generate 1d-SFS and 2d-SFS in windows across the genome, and R scripts to derive summary statistics from those (\(\pi\), \(\theta\), \(d_{xy}\), Tajima's \(D\)) as well as the results (SFS and summary statistics in windows) PCANGSD.zip. Contains arguments to generate the input file (in beagle format) for PCangsd, results from PCangsd (covariance matrix and selection test statistics) and a R script to plot a PCA. Stairway_Plots.zip. Contains blueprint files to run StairwayPlots and results. Simulations.zip. Contains commands to run all simulations, <em>dadi</em> and <em>moments</em> models for inference, results and some R scripts to reproduce plots. Moments_models.zip. Contains the one-population and two-population models for <em>moments </em>that we designed for this study. Moments_results.zip. Contains results from demographic models optimized for the empirical data, as well as scripts and results from Likelihood Ratio Tests and estimation of uncertainties using the Godambe Information Matrix. Please note that most of these scripts and models are also available from GitHub (https://github.com/Nopaoli/Demographic-Modelling) .
DOI: 10.17632/kndd25m5y3.1
title: Supplemental Material 'Yield gap analysis in dairy production systems using the mechanistic model LiGAPS-Dairy'

description: This Supplemental Material belongs to the paper 'Yield gap analysis in dairy production systems using the mechanistic model LiGAPS-Dairy', and contains two supplementary tables. For more information, contact Aart van der Linden (Email: aart.vanderlinden@wur.nl).
DOI: 10.17632/5bhjkv7hff.1
title: Obtained Material properties

description: Because of scarf repair geometry, using shell composite section to simulate 2D model of scarf repair is not feasible. Current work presents a development in material properties assignment to a planar geometry that makes plane strain, plane stress and generalized plane strain modeling of a scarf repair under a uniaxial tensile load possible.
DOI: 10.17632/xx6f327rb5.5
title: C-test Meta-analysis

description: This dataset contains all of the spreadsheets, code, and files that we used to complete our meta-analysis of correlation coefficients reported in C-test studies (published in English). Files can also be found on my personal website (https://rb.gy/z7nov3).
DOI: 10.17632/hzjvj99rbh.1
title: Material Rotation MATLAB Code

description: To rotate on-axis orthotropic material properties to ABAQUS 2D planar CSYS, a MATLAB CODE is required. Details of material properties rotation are described in attached file.
DOI: 10.17632/mb77zhxynt.1
title: Coreferent Clusters (dataset and a pre-trained model)

description: MySQL database (a single table `word`) that contains a marked set of Ukrainian texts with coreferent groups and additional information (Lemma, Cases, etc) for each token. The reference below implies a Docker repository that represents an HTTP web-service to detect coreferent pairs for a Ukrainian corpus.
DOI: 10.17632/r9vkdj8pw6.1
title: Perception on Online Teaching and Learning Among Health Sciences Students in Higher Education Institutions during the COVID-19 Lockdown – Ways to Improve Teaching and Learning in Saudi Colleges and Universities

description: This Questionnaire consisting the information gathered through Online channel (QuestionPro) to assess the student’s perceptions about the online teaching and learning during COVID 19 lockdown and their satisfaction to the provided facilities as well as their future recommendation with online learning. Demographic data consist of categorical variables sets. where as the 5 point likert scale was used for main outcome questions (divided into two sections). This is the requirement of the journal to upload data
DOI: 10.17632/ffzwgk8bsg.1
title: Hydrological Risk Transfer Model for droughts impacts on Agriculture in Southeastern Brazil
DOI: 10.17632/hm25k9sdm4.1
title: Partner management Framework, key concept identification, clustering, merging and removal

description: The process of creating the partner management framework from the identified literature list
DOI: 10.17632/2ghxnrkr9p.3
title: COVID-19 in Europe at NUTS3 level

description: To aid the evaluation of the determinants and impact of the COVID-19 pandemic at a large scale, we present here a new dataset with socio-demographic, economic, public policy, health, pollution and environmental factors for the European Union at the small regions level (NUTS3). This dataset can help to monitor the COVID-19 mortality and infections at the sub-national level and enable analysis that may inform future policymaking.
DOI: 10.17632/t57pws28rp.1
title: Partner Management Query Results including inclusion/exclusion reason

description: 120 articles articles found by using Publish or Perish on Scholar and Scopus, concerning partner management. The following query was used: (value OR power OR management) AND (partner OR complementor OR alliance) AND (software ecosystem OR business OR ecosystem).
DOI: 10.17632/xbvbkj5dtm.1
title: CRITICAL LATERAL TORSIONAL BUCKLING UNDER INTERMEDIATE MOMENT & REVISED LOADS

description: 1- Moment factor diagrams 2- MSE and correlation factor charts
DOI: 10.17632/ktyydm6wgp.1
title: Cryogenic CFRP Drilling

description: A total of 16 drilling experiments, based on the full-factorial combination of the 3 predictors (cutting fluid, cutting speed, and pecking), were performed on the CNC 5-axis machining center. Three through-holes were drilled in each experimental run. For each run, the measurements regarding tool wear (VB), force components (Fxy and Fz), specific cutting energy (SCE), surface roughness (Ra), hole circularity at entry and exit (Cr1 and Cr2), hole coaxiality, and process cost (PC) were performed using the aforementioned measuring instruments.
DOI: 10.17632/p6363fc333.1
title: Parathyroid hormone induces transition of myofibroblasts in arteriovenous fistula and increases maturation failure - Supplemental Figures and Tables

description: Supplemental Figure 1. AVF created by aortocaval puncture. Supplemental Figure 2. Doppler signals for confirmation of successful AVF creation. Supplemental Figure 3. Non-specific staining control. Supplemental Figure 4. Non-specific control of anti-ITGB6 antibody. Supplemental Table 1. Reference of the antibodies used in western blots Supplemental Table 2. Demographic and laboratory characteristics and risk for AVF maturation failure tested by univariable logistic regression. Supplemental Table 3. Medication and risk for AVF maturation failure tested by univariable logistic regression.
DOI: 10.17632/w7g3ynkc6n.2
title: Cuboid-Sphere Collision Detection

description: The present program tests the run-time efficiency of algorithms for collision detection of one sphere and one randomly oriented cuboid. The acceptance rate, i.e. the number of non-overlapping configurations, the radius of the sphere and a set of cuboids with different thickness T, length L and width W are defined in input. The program generates a set number of configurations choosing a random point inside a spherocuboid as the centre of the sphere. The spherocuboid is centred at the centre of the cuboid and has the same orientation of the cuboid.
DOI: 10.17632/bj3nwk3wpm.1
title: Ryan et al., 2021