cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18746
title: Reconstruction Algorithms In Undersampled Afm Imaging - Results

description: This data set contains numerical simulation results from experiments for the paper "Review of compressed sensing reconstruction algorithms in AFM cell imaging", submitted to IEEE Journal of Selected Topics in Signal Processing.

The data set consists of an HDF5 file containing the simulation results as well as MD5 and SHA checksums of the HDF5 database for validating the integrity of the data after download.

The data set is licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/).

Python scripts used for producing these results as well as Python scripts for extracting images and data used in the accompanying paper from the database can be found in the accompanying deposition http://doi.org/10.5281/zenodo.18745.

The data set contains images, and reconstructed versions of these, originally published in the data set available at http://dx.doi.org/10.5281/zenodo.17573.
DOI: 10.5281/zenodo.2538022
title: Patients data for meta-analysis of genotype-phenotype associations in Bardet-Biedl Syndrome

description: Data used for metaanalysis of the genotype-phenotype relationship in Bardet Biedl Syndrome.

File "EV table 1 literature.xlsx" describes studies that were included in the metaanalysis. File "EV table 2 dataset.xlsx" contains individual patient data. Each row corresponds to a patient. If the same patient was reported in more than 1 study, their data were merged into one row. The columns are as follows:

* source - a citation to the study the patient originated in

* unique family - no two patients with "1" in this column belong to the same family

* source case n. - A unique identifier of the patient within the study

* gene - A gene carrying the principal BBSome related mutation

* nucleotide change (allele 1,2)  - description of the mutations in DNA individual alleles of the gene, in HGVS nomenclature

* protein change (allele 1,2)  - description of how the mutations in DNA change the resulting protein, in HGVS nomenclature

* type of mut allele 1,2 - whether the given mutation  is considered missense (MS) or large truncation (trunc)

* mut/mut - combination of mutations for both alleles

* additional mutations - mutations in other BBSome-related genes. Format is "gene: DNA mutation, protein mutation"

* sex - "F" or "M"  (where reported)

* age group - age group (where reported)

* age - age in years. Contains fractions, decimal values and "5 month"

* RD, OBE, PD, CI, REP, REN, HEART, LIV - presense or absence of phenotypes, if reported. RD – retinal dystrophy, OBE – obesity, PD – polydactyly, CI – cognitive impairment , REP – reproductive system anomalies, REN – renal anomalies, HRT – heart disease, LIV – liver anomalies. Values are "" (not reported), "0" (no phenotype), "1" (phenotype present), "1!" conflicting reports of phenotype in multiple studies (some patients were involved in multiple studies)

* note - miscellanous text, in particular contains notes on patients merged from multiple studies

====

The protocol for this meta-analysis was pre-registered with PROSPERO (CRD42018096099).

PubMed and Google Scholar databases were searched in May 2018 for the following keywords: [bardet-biedl syndrome AND (genotype phenotype OR cohort)]. Other suitable records were identified by snowball searching, in particular, by retrieving relevant articles from the references of the studied full-texts. In addition, all the references included in the publicly available Euro-Wabb database (https://lovd.euro-wabb.org/home.php) were covered. Our search was limited to the literature published in English language and covered the period from the inception of each database to the 21st of May 2018.
DOI: 10.21227/dxgz-3m95
title: Processed airborne hyperspectral images and mosaics of a Paranapanema River region in Capivara reservoir, Brazil

description: This database is a image set of a strongest glint-affected region of inland water Capivara reservoir, Brazil. We carried out a flight survey in September 2016 on the confluence region of the Tibagi and Paranapanema Rivers. We use the hyperspectral camera manufactured by Rikola, model FPI2014, wich collect 25 spectral bands at following intervals and full widths at half maximum (FWHM), both expressed in nanometers (nm):  505.37, (9.51), 515.31 (14.05), 528.55 (14.82), 539.87 (14.03), 546.99 (14.31), 554.99 (13.26), 560.22 (12.11), 570.44 (14.31), 579.58 (13.26), 592.57 (16.57), 605.73 (14.98), 620.22 (16.26), 625.92 (15.47), 655.06 (12.55), 665.72 (15.59), 670.03 (15.74), 681.33 (15.89), 695.04 (14.96), 700.46 (15.44), 707.96 (15.32), 715.19 (15.37), 725.37 (14.72), 737.29 (14.98), 749.87 (15.08) and 780.1 (14.72).  The external orientation parameters (EOP) are acquired by dual frequency GPS and adjusted with tie points computed by bundle adjustment. We perform individual georeferencing on each individual image. This dataset was processed using nine approaches to mosaicking individual georeferenced images. Three of then are new proposed methods developed by the authors. Details of processing and methodology are described on the oficial paper (currently in review process of journal). The authors thank the Graduate Program in Cartographic Sciences (PPGCC) of the School of Science and Technology (UNESP), campus Presidente Prudente, for allowing the development of this research; the National Council for Scientific and Technological Development (CNPq) and the Coordination for the Improvement of Higher Education Personnel (CAPES) for financial assistance dedicated to the project. The authors extend special thanks to the São Paulo Research Foundation (FAPESP) for financial support for the hyperspectral camera (2013/50426-4).
DOI: 10.21227/fbks-rj40
title: Python algorithms and dataset of empirical line method applied to inland water hyperspectral images combining reference targets and in situ water measurements

description: Empirical line methods are frequently used to correct images from aerial remote sensing. Remote sensing of aquatic environments captures only a small amount of energy because the water absorbs much of it. The small signal response of the water is proportionally smaller when compared to the other land surface targets. This dataset presents some resources of a new approach to calibrate empirical lines combining reference calibration panels with a water point. We optimize the method using python algorithms until reaches the best result. We evaluated several combinations of targets using both linear and exponential fit. All results are included: python scripts to calibrate and validate the ELM and also the entire dataset of 26 water espectrum.
DOI: 10.6084/m9.figshare.22696285
title: RTOWHTO

description: Additional anteromedial staple fixation prevents changes in the posterior tibial slope in retrotuberosity bi-planar open-wedge high tibial osteotomy
DOI: 10.6084/m9.figshare.22696285.v1
title: RTOWHTO

description: Additional anteromedial staple fixation prevents changes in the posterior tibial slope in retrotuberosity bi-planar open-wedge high tibial osteotomy
DOI: 10.5281/zenodo.546734
title: Arxiv:1704.05309: Supporting Dataset

description: This is a supporting dataset that accompanies arXiv:1704.05309. It consists of databases and parameter files used to generate the numerical results presented in the paper.

This deposit contains the following files:

<strong>Databases</strong>

These are SQLite databases produced by the Sussex LSSEFT tool (git revision 977e5b03) containing the one-loop SPT results and counterterms used to obtain EFT predictions for the real-space and redshift-space power spectra.


	<strong>Planck2015_CAMB@z=0_k10-full.sqlite</strong><br>
	This contains results for a Planck2015 cosmology. The initial power spectrum is generated using linear theory by CAMB at z = 50, using the parameter file documented below. The tree-level component is generated using a CAMB z = 0 power spectrum, also computed using linear theory, for which we also supply a CAMB parameter file.
	<strong>MDR1_CAMB@z=0_k10-full.sqlite</strong><br>
	This contains results for a cosmology matching the MultiDark MDR1 simulation. The initial power spectrum is generated using linear theory by CAMB at z = 50 and the tree-level component is generated using a CAMB z = 0 power spectrum as above. The corresponding parameter files are supplied; see below.
	<strong>MDR1_CAMB@z=0_k10-EdS.sqlite</strong><br>
	This contains results matching the <strong>MDR1_CAMB@z=0_k10-full.sqlite </strong>database, but with growth functions computed using the standard SPT Einstein-de Sitter approximation.


<strong>CAMB parameter files</strong>

Power spectra were produced using the November 2015 release of CAMB.


	<strong>Planck2015_linear_init_params.ini</strong>, <strong>Planck2015_linear_final_params.ini</strong><br>
	Parameter files to generate initial (z = 50) and final (z = 0) linear power spectra in the Planck2015 cosmology.
	<strong>Planck2015_nonlinear_params.ini</strong><br>
	Parameter file to generate a <em>nonlinear </em>z = 0 power spectrum using the HALOFIT prescription for the Planck2015 cosmology. This is used to renormalize the EFT power spectrum.
	<strong>MDR1_linear_init_params.ini</strong>, <strong>MDR1_linear_final_params.ini</strong><br>
	Parameter files to generate initial (z = 50) and final (z = 0) linear power spectra in the MDR1 cosmology.


<strong>gevolution parameter files</strong>

N-body simulations were performed using gevolution 1.1.


	<strong>gevolutionsettings.ini</strong><br>
	This is a settings file for gevolution that reproduces our 1024^3-particle, (2000 Mpc/h)-side simulation volume, used to compute the real-space power spectrum and the l = 0, 2, 4 multipoles of the redshift-space power spectrum.
DOI: 10.5281/zenodo.56381
title: Data And Scripts For "Den Samlede Dyd: Kardinaldyderne I Arkaisk Og Klassisk Tid"

description: The version tag represents the publication of the book. Changes to the documentation or bug fixes on the scripts may be made after this release, but there will <em>not</em> be made any changes to the content of the dataset.
DOI: 10.26030/jtcr-jn42
title: Expression Data from International C. elegans Experiment 1st (ICE-FIRST)

description: The effect of microgravity on gene expression in C.elegans was comprehensively analysed by DNA microarray (Agilent). Overall design: Mix staged C. elegans N2 was exposed microgravity for 10 days.
DOI: 10.34740/kaggle/dsv/5523477
title: US counties COVID 19 dataset
DOI: 10.5517/ccdc.csd.cc26cc87
title: CCDC 2036708: Experimental Crystal Structure Determination

description: Related Article: Hashini N. K. Herath, Austin L. MacRae, Angel Ugrinov, Glenn R. Morello, Alexander R. Parent|2023|Eur.J.Inorg.Chem.|26|e202200747|doi:10.1002/ejic.202200747
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26cc98
title: CCDC 2036709: Experimental Crystal Structure Determination

description: Related Article: Hashini N. K. Herath, Austin L. MacRae, Angel Ugrinov, Glenn R. Morello, Alexander R. Parent|2023|Eur.J.Inorg.Chem.|26|e202200747|doi:10.1002/ejic.202200747
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vkd1
title: CCDC 2051313: Experimental Crystal Structure Determination

description: Related Article: Ganesh Kumar Raut, Genji Sukumar, Moumita Chakrabarti, Jolly Janette Mendonza, Srihari Pabbaraja, B. Jagan Mohan Reddy, Ramakrishna Sistla, Sai Balaji Andugulapati, Manika Pal Bhadra|2022|Apoptosis|27|825|doi:10.1007/s10495-022-01745-w
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26vkf2
title: CCDC 2051314: Experimental Crystal Structure Determination

description: Related Article: Ganesh Kumar Raut, Genji Sukumar, Moumita Chakrabarti, Jolly Janette Mendonza, Srihari Pabbaraja, B. Jagan Mohan Reddy, Ramakrishna Sistla, Sai Balaji Andugulapati, Manika Pal Bhadra|2022|Apoptosis|27|825|doi:10.1007/s10495-022-01745-w
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b741s
title: CCDC 2151804: Experimental Crystal Structure Determination

description: Related Article: Saheli Karmakar, Suvendu Dey, Manoj Upadhyay, and Debdas Ray|2022|ACS Omega|7|16827|doi:10.1021/acsomega.2c01909
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.249647
title: Comparison Results From 'A Global Comparison Of Integrated Water Vapour Estimates From Wmo Radiosondes, Aeronet Sun Photometers And Gps For The 17 Year Period From 1997 To 2013' By Wilson, Hansen, Bingley And Milton

description: This dataset contains the raw comparison results from the paper <em>A global comparison of integrated water vapour estimates from WMO radiosondes, AERONET sun photometers and GPS for the 17 year period from 1997 to 2013</em> by Wilson, Hansen, Bingley and Milton.

The three files contain comparisons between:

a) AERONET and Radiosonde (Validation_AERONET-Radiosonde.csv)

b) AERONET and GPS (Validation_AERONET.csv)

c) Radiosonde and GPS (Validation_Radiosonde.csv)
DOI: 10.5281/zenodo.1037548
title: Evolutionary Dynamics Of Mycorrhizal Symbiosis In Land Plant Diversification - Phylogenetic Data

description: This submission supplements the manuscript entitled <em>Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification</em> by <strong>Frida A.A. Feijen, Rutger A. Vos, Jorinde Nuytinck & Vincent S.F.T. Merckx.</strong>

The contents of this submission are dating analysis results for rootings of the land plant topology. Contains the following files:


	*.log.gz BEAST logs
	*.trees.gz BEAST trees
	*.tiff screen dumps of tracer, showing the burn-in
	*.consensus.trees produced with treeannotator


<strong>For more information</strong>: https://github.com/naturalis/mycorrhiza/tree/v1.0.0
DOI: 10.5281/zenodo.807765
title: A Detailed Comparison Of Multi-Dimensional Boltzmann Neutrino Transport Methods In Core-Collapse Supernovae

description: This dataset contains results of 1D and 2D static neutrino transport calculations using discrete ordinates and Monte Carlo methods, as described in the 2017 paper by the same name. The results include the neutrino momentum space grids used for the simulations, the full spectral and angular distribution functions, energy-dependent angular moments of the distribution functions, and neutrino heating rates. The HDF5 dataset name corresponds to the simulation of the same name in the 2017 paper, Table 1. Also included are the fluid backgrounds and opacities. See the readme for a description of all quantities in the datasets.

There are also two simulation setups including all initial conditions and parameters for 1D and 2D Monte Carlo calculations using the open-source code Sedonu. This accompanies Sedonu commit 8bd509b27aa0461df26b194df65b4526d6c153fe.
DOI: 10.5281/zenodo.163349
title: 3D-E-Chem/Knime-Klifs: V1.0.14

description: KLIFS KNIME nodes v1.0.14

Some bug fixes, code cleaning, and inclusion of a testflow for all KLIFS KNIME nodes.

Changed

Added KNIME testflow Client is now based on okhttp/gson libraries to prevent conflicts within KNIME Project is linked to Codacy and Travis-CI

Fixed

When and empty input table is provided the nodes will now return an emtpy list instead of polling the KLIFS webservice. Cleaned code based on Codacy flags
DOI: 10.5281/zenodo.1423300
title: High Temperature Compression Studies Of Ti64 And Ti407 Alloys Using Dilatometer

description: Ti64 and Ti407 alloys were compressed at temperatures 700C, 850C and 950C and strain rates 10-2, 10-1 and 1 s-1 to 50% height reduction using TA Instruments DIL805 Compression Dilatometer. The cylindrical samples measured 5 mm diameter and 10 mm length. The Ti64 alloy was machined from the top of an as-received forged Airbus testpiece with a bimodal microstructure. The Ti407 alloy was machined from the edge of a forged TIMET testpiece with a lamellar microstructure. Al2O3 platens were used throughout all tests to minimise temperature differences between the end and centre of the samples, except at 700C in Ti64 which used Si3N4 platens due to the higher material yield strength. Temperature was controlled using an S-Type thermocouple welded to the centre of the samples, along with another two thermocouples welded to the end and between the end and centre of samples to monitor temperature differences. Mo disks were attached to the ends of the samples to further reduce temperature differences at the ends of the samples, along with graphite lubricant to reduce friction. The alloys were deformed in an inert He gas atmosphere.
description: http://gow.epsrc.ac.uk/NGBOViewGrant.aspx?GrantRef=EP/R001715/1
EPSRC Reference: EP/R001715/1 Title: LightForm: Embedding Materials Engineering in Manufacturing with Light Alloys Principal Investigator: Prangnell, Professor P Department: Materials Organisation: University of Manchester, The Scheme: Programme Grants EPSRC Research Topic Classifications: - Continuum Mechanics - Materials Characterisation - Materials Processing EPSRC Industrial Sector Classifications: Manufacturing
DOI: 10.6084/m9.figshare.22180051
title: PRISMA checklist

description: PRISMA checklist for the study " <strong>The doctor-patient relationship and barriers in non-verbal communication during teleconsultation in the era of COVID-19: A Scoping Review"</strong>
DOI: 10.6084/m9.figshare.22180051.v2
title: PRISMA checklist

description: PRISMA checklist for the study " <strong>The doctor-patient relationship and barriers in non-verbal communication during teleconsultation in the era of COVID-19: A Scoping Review"</strong>
DOI: 10.6084/m9.figshare.22180051.v1
title: PRISMA checklist

description: PRISMA checklist for the study " <strong>The doctor-patient relationship and barriers in non-verbal communication during teleconsultation in the era of COVID-19: A Scoping Review"</strong>
DOI: 10.5281/zenodo.1324020
title: Realismia Ja Konstruktionismia Opinnäytteissä

description: Code and research data for an article: Mäntysaari, M & Lassila, M. (2018). Realismia ja konstruktionismia opinnäytteissä.
DOI: 10.6084/m9.figshare.22180012
title: Tables

description: <strong>Table 1.</strong> General Characteristics of the included studies (n=18)
DOI: 10.6084/m9.figshare.22180012.v1
title: Table 1

description: <strong>Table 1.</strong> General Characteristics of the included studies (n=18)
DOI: 10.25345/c5br8ms00
title: MassIVE MSV000091796 - Dissecting detergent-insoluble proteome in Alzheimer's disease by improved TMT-MS of high accuracy
title: Protein aggregation of amyloid beta peptides and tau are pathological hallmarks of Alzheimer's disease (AD), which are often resistant to detergent extraction and thus enriched in the insoluble proteome. However, additional proteins that co-accumulate in the detergent-insoluble AD brain proteome remain less studied. Here we comprehensively characterized key proteins and pathways in the detergent-insoluble proteome from human AD brain samples by differential extraction, coupled with tandem mass tags labeling and two-dimensional liquid chromatography tandem mass spectrometry (TMT-LC/LC-MS/MS).
DOI: 10.15468/dl.4myxya
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum stagnophilum Morrone & Zuloaga"
 ]
}

 The dataset includes 856 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101040-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpsf0g
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "TaxonKey is Pleurothallis ruscifolia (Jacq.) R.Br."
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015046-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54634
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.cyuv65
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protonemura risi (Jacobson & Bianchi, 1905))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 429 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250398-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry29cv
title: Occurrence Download

description: A dataset containing 401250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Coregonus Linnaeus, 1758"
 ]
}

 The dataset includes 401250 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097888-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.