cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.665117s
title: Data from: Rearing a virulent common cuckoo is not extra costly for its only cavity-nesting host

description: Virulent brood parasites refrain from arduous parental care, often kill
 host progeny and inflict rearing costs upon their hosts. Quantifying the
 magnitude of such costs across the whole period of care (from incubation
 through to parasite fledgling independence) is essential for understanding
 the selection pressures on hosts to evolve antiparasitic defences. Despite
 the central importance of such costs for our understanding of
 co-evolutionary dynamics, they have not yet been comprehensively
 quantified in any host of any avian brood parasite. We quantified parasite
 rearing costs in common redstarts Phoenicurus phoenicurus raising either
 parasitic common cuckoo Cuculus canorus or their own chicks throughout the
 complete breeding cycle and used multiple cost parameters for each
 breeding stage: incubation, brooding and feeding effort; length of
 parental/host care; parent/host body condition and the
 heterophil/lymphocyte ratio (stress level indicator). Surprisingly and
 contrary to traditional assumptions, rearing the parasite per se was not
 associated with overall higher physiological or physical costs to hosts
 above the natural levels imposed by efforts to rear their own progeny. The
 low parasite-rearing costs imposed on hosts may in part explain the low
 levels of known host counter-defences in this unusually frequently
 parasitised cuckoo host.
description: costs_of_brood_parasitism_data
DOI: 10.5061/dryad.h5q66
title: Data from: Basal cold but not heat tolerance constrains plasticity among Drosophila species (Diptera: Drosophilidae)

description: Thermal tolerance and its plasticity are important for understanding
 ectotherm responses to climate change. However, it is unclear whether
 plasticity is traded off at the expense of basal thermal tolerance and if
 plasticity is subject to phylogenetic constraints. Here, we investigated
 associations between basal thermal tolerance and acute plasticity thereof
 in laboratory-reared adult males of eighteen Drosophila species at low and
 high temperatures. We determined the high and low temperatures where 90 %
 of flies are killed (ULT90 and LLT90 respectively) and also the magnitude
 of plasticity of acute thermal pre-treatments (i.e. rapid cold- and
 heat-hardening) using a standardized, species-specific approach for
 induction of hardening responses. Regression analyses of survival
 variation were conducted in ordinary and phylogenetically-informed
 approaches. Low temperature pre-treatments significantly improved LLT90 in
 all species tested except for D. pseudoobscura, D. mojavensis and D.
 borealis. High temperature pre-treatment only significantly increased
 ULT90 in D. melanogaster, D. simulans, D. pseudoobscura and D. persimilis.
 LLT90 was negatively correlated with low temperature plasticity even after
 phylogeny was accounted for. No correlations were found between ULT90 and
 LLT90, or between ULT90 and rapid heat hardening RHH in ordinary
 regression approaches. However, after phylogenetic adjustment there was a
 positive correlation between ULT90 and RHH. These results suggest a
 trade-off between basal low temperature tolerance and acute low
 temperature plasticity, but at high temperatures, increased basal
 tolerance was accompanied by increased plasticity. Furthermore, high and
 low temperature tolerances and their plasticity are clearly decoupled.
 These results are of broad significance to understanding how organisms
 respond to changes in habitat temperature and the degree to which they can
 adjust thermal sensitivity.
description: Discriminating_tempsrapid_cold_hardeningrapid_heat_hardening_1rapid_heat_hardening_repeated
DOI: 10.57760/sciencedb.35929
title: Dataset to analyse Impact of MMRY Cash Transfer Scheme on Women's Voting Behavior in Bihar Assembly Elections 2025
title: Dataset to analyse Impact of MMRY Cash Transfer Scheme on Women's Voting Behavior in Bihar Assembly Elections 2025

description: Collection Period: November 15–20, 2025 (post-Bihar Assembly Elections)Geographical Scope: 5 Bihar districts (Patna, Darbhanga, Muzaffarpur, Madhubani, Gaya); urban/rural mix.Methodology: Semi-structured interviews (35 questions) with 52 MMRY ₹10,000 beneficiary women. Face-to-face in Hindi, audio-recorded, transcribed, double-coded (NVivo 14, Cohen's Kappa &gt;0.90). Purposive sampling of verified recipients who voted.File: Interview-Data-52-Respondents.xlsx (23.7 KB, 4 sheets):Interview Responses (52×37): Primary data; rows=respondents R001–R052, columns=demographics (age, education, income INR), MMRY receipt timing/method, Likert scales (1-5), voting choice (84.6% NDA)Summary Statistics: Counts/percentages (age, occupation, voting)Theme Analysis: 14 qualitative themes (e.g., "Tangibility of Money" 92.3%)Questionnaire Items: 35 questions with response typesData Quality: 100% complete, no missing values. Tools: Samsung Galaxy A52 (recording), NVivo 14 (coding), LibreOffice Calc 7.6.4 (Excel formatting). Opens in Excel/LibreOffice/Google Sheets.Key Metrics: MMRY importance 4.3/5, empowerment 4.1/5, 90.4% positive impression.
description: Collection Period: November 15–20, 2025 (post-Bihar Assembly Elections)Geographical Scope: 5 Bihar districts (Patna, Darbhanga, Muzaffarpur, Madhubani, Gaya); urban/rural mix.Methodology: Semi-structured interviews (35 questions) with 52 MMRY ₹10,000 beneficiary women. Face-to-face in Hindi, audio-recorded, transcribed, double-coded (NVivo 14, Cohen's Kappa &gt;0.90). Purposive sampling of verified recipients who voted.File: Interview-Data-52-Respondents.xlsx (23.7 KB, 4 sheets):Interview Responses (52×37): Primary data; rows=respondents R001–R052, columns=demographics (age, education, income INR), MMRY receipt timing/method, Likert scales (1-5), voting choice (84.6% NDA)Summary Statistics: Counts/percentages (age, occupation, voting)Theme Analysis: 14 qualitative themes (e.g., "Tangibility of Money" 92.3%)Questionnaire Items: 35 questions with response typesData Quality: 100% complete, no missing values. Tools: Samsung Galaxy A52 (recording), NVivo 14 (coding), LibreOffice Calc 7.6.4 (Excel formatting). Opens in Excel/LibreOffice/Google Sheets.Key Metrics: MMRY importance 4.3/5, empowerment 4.1/5, 90.4% positive impression.
DOI: 10.15468/dl.5hda4a
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capsicum eximium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 93 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000867-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.23r11
title: Data from: Lineage-specific mapping of quantitative trait loci

description: We present an approach for quantitative trait locus (QTL) mapping, termed
 "lineage-specific QTL mapping", for inferring allelic changes of
 QTL evolution along branches in a phylogeny. We describe and analyze the
 simplest case: by adding a third taxon into the normal procedure of QTL
 mapping between pairs of taxa, such inferences can be made along lineages
 to a presumed common ancestor. While comparisons of QTL maps among species
 can identify homology of QTLs by apparent co-location, lineage specific
 mapping of QTL can classify homology into (1) orthology (shared origin of
 QTL) versus (2) paralogy (independent origin of QTL within resolution of
 map distance). In this light, we present a graphical method that
 identifies six modes of QTL evolution in a three taxon comparison. We then
 apply our model to map lineage-specific QTLs for inbreeding among three
 taxa of yellow monkeyflower: Mimulus guttatus and two inbreeders M.
 platycalyx and M. micranthus, but critically assuming outcrossing was the
 ancestral state. The two most common modes of homology across traits were
 orthologous (shared ancestry of mutation for QTL alleles). The outbreeder
 M. guttatus had the fewest lineage- specific QTL, in accordance with the
 presumed ancestry of outbreeding. Extensions of lineage-specific QTL
 mapping to other types of data and crosses, and to inference of ancestral
 QTL state, are discussed.
description: Chen and Ritland
 supplementary data
DOI: 10.5061/dryad.7jb92
title: Data from: Disentangling visual and olfactory signals in mushroom-mimicking Dracula orchids using realistic three-dimensional printed flowers

description: Flowers use olfactory and visual signals to communicate with pollinators.
 Disentangling the relative contributions and potential synergies between
 signals remains a challenge. Understanding the perceptual biases exploited
 by floral mimicry illuminates the evolution of these signals. Here, we
 disentangle the olfactory and visual components of Dracula lafleurii,
 which mimics mushrooms in size, shape, color and scent, and is pollinated
 by mushroom-associated flies. To decouple signals, we used
 three-dimensional printing to produce realistic artificial flower molds
 that were color matched and cast using scent-free surgical silicone, to
 which we could add scent. We used GC-MS to measure scents in co-occurring
 mushrooms, and related orchids, and used these scents in field
 experiments. By combining silicone flower parts with real floral organs,
 we created chimeras that identified the mushroom-like labellum as a source
 of volatile attraction. In addition, we showed remarkable overlap in the
 volatile chemistry between D. lafleurii and co-occurring mushrooms. The
 characters defining the genus Dracula – a mushroom-like, ‘gilled’ labellum
 and a showy, patterned calyx – enhance pollinator attraction by exploiting
 the visual and chemosensory perceptual biases of drosophilid flies. Our
 techniques for the manipulation of complex traits in a nonmodel system not
 conducive to gene silencing or selective breeding are useful for other
 systems.
description: Behavior Data for
 Policha etalLanding and approach
 rates for drosophilid flies to Dracula lafleurii and various
 treatmentsData for Policha
 etal.xlsxChemistry Data for
 Policha etalStandardized GCMS data
 from Dracula orchids, mushrooms and related co-occurring
 orchidsChemistry data to
 upload.xls
DOI: 10.57760/sciencedb.08428
title: Open Data to "Characterizing patients who may benefit from mature medical AI models in real-world clinical applications"
title: Open Data to "Characterizing patients who may benefit from mature medical AI models in real-world clinical applications"

description: This repository is to share data materials to reproduce study of "Characterizing patients who may benefit from mature medical AI models in real-world clinical applications"
description: This repository is to share data materials to reproduce study of "Characterizing patients who may benefit from mature medical AI models in real-world clinical applications"
DOI: 10.5061/dryad.1fk2s
title: Data from: Thermal physiology: a new dimension of the pace-of-life syndrome

description: 1) Current syndrome research focuses primarily on behavior with few
 incorporating components of physiology. One such syndrome is the
 Pace-of-Life Syndrome (POLS) which describes covariation between
 behaviour, metabolism immunity, hormonal response, and life history
 traits. Despite the strong effect temperature has on behavior, thermal
 physiology has yet to be considered within this syndrome framework. 2) We
 proposed the POLS to be extended to include a new dimension, the cold-hot
 axis. Under this premise, it is predicted that thermal physiology and
 behavior would covary whereby individual positioning along the thermal
 continuum would coincide with that of the behavioral continuum. 3) This
 hypothesis was tested by measuring thermal traits of delicate skinks
 (Lampropholis delicata) and linking it to their behavior. Principal
 components analysis and structural equation modelling were used to
 determine if traits were structured within the Pace-of-Life Syndrome
 (POLS) and to characterize the direction of their interactions. 4) Model
 results supported the inclusion of the cold-hot axis into the POLS and
 indicated that thermal physiology was the driver of this relationship, in
 that thermal traits either constrained or promoted activity, exploration,
 boldness, and social behavior. 5) This study highlights the need to
 integrate thermal physiology within a syndrome framework.
description: CT_PT_TT_dataThis is the raw data for each of the thermal, personality, and cognitive traits used in the analyses for individual lizards.
DOI: 10.5061/dryad.t285m
title: Data from: Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosa cystic fibrosis bacterial isolates

description: Recent years have seen renewed interest in phage therapy - the use of
 viruses to specifically kill disease-causing bacteria – because of the
 alarming rise in antibiotic resistance. However, a major limitation of
 phage therapy is the ease at with bacteria can evolve resistance to
 phages. Here we determined if in vitro experimental coevolution can
 increase the efficiency of phage therapy by limiting the resistance
 evolution of intermittent and chronic cystic fibrosis Pseudomonas
 aeruginosa lung isolates to four different phages. We first pre-adapted
 all phage strains against all bacterial strains and then compared the
 efficacy of pre-adapted and non-adapted phages against ancestral bacterial
 strains. We found that evolved phages were more efficient in reducing
 bacterial densities than ancestral phages. This was primarily because only
 50% of bacterial strains were able to evolve resistance to evolved phages,
 while all bacteria were able to evolve some level of resistance to
 ancestral phages. While the rate of resistance evolution did not differ
 between intermittent and chronic isolates, it incurred a relatively higher
 growth cost for chronic isolates when measured in the absence of phages.
 This is likely to explain why evolved phages were more effective in
 reducing the densities of chronic isolates. Our data shows that pathogen
 genotypes respond differently to phage pre-adaptation, and as a result,
 phage therapies might need to be individually adjusted for different
 patients.
description: ODdata
 Sheet1OD data
 1ODdata
 Sheet2OD data
 2
DOI: 10.5061/dryad.c80p7
title: Data from: Automation and evaluation of the SOWH test with SOWHAT

description: The Swofford–Olsen–Waddell–Hillis (SOWH) test evaluates statistical
 support for incongruent phylogenetic topologies. It is commonly applied to
 determine if the maximum likelihood tree in a phylogenetic analysis is
 significantly different than an alternative hypothesis. The SOWH test
 compares the observed difference in log-likelihood between two topologies
 to a null distribution of differences in log-likelihood generated by
 parametric resampling. The test is a well-established phylogenetic method
 for topology testing, but it is sensitive to model misspecification, it is
 computationally burdensome to perform, and its implementation requires the
 investigator to make several decisions that each have the potential to
 affect the outcome of the test. We analyzed the effects of multiple
 factors using seven data sets to which the SOWH test was previously
 applied. These factors include a number of sample replicates, likelihood
 software, the introduction of gaps to simulated data, the use of distinct
 models of evolution for data simulation and likelihood inference, and a
 suggested test correction wherein an unresolved “zero-constrained” tree is
 used to simulate sequence data. To facilitate these analyses and future
 applications of the SOWH test, we wrote SOWHAT, a program that automates
 the SOWH test. We find that inadequate bootstrap sampling can change the
 outcome of the SOWH test. The results also show that using a
 zero-constrained tree for data simulation can result in a wider null
 distribution and higher p-values, but does not change the outcome of the
 SOWH test for most of the data sets tested here. These results will help
 others implement and evaluate the SOWH test and allow us to provide
 recommendations for future applications of the SOWH test. SOWHAT is
 available for download from https://github.com/josephryan/SOWHAT.
description: Analysis and Evaluation
 of SOWH test on Seven DatasetsThis file contains all
 commands used and configuration files necessary for analyzing the SOWH
 test with SOWHAT.analysis.zipAppendix 1RAxML results and the BFGS optimizationhttps://github.com/josephryan/sowhat/tree/3137601014e24274ebc115acabe086290b5f46e7SOWHAT V0.21. This is the version of the sowhat software used for the analyses.
DOI: 10.5061/dryad.f3k8p
title: Data from: Host and parasite thermal acclimation responses depend on the stage of infection

description: 1. Global climate change is expected to alter patterns of temperature
 variability, which could influence species interactions including
 parasitism. Species interactions can be difficult to predict in
 variable-temperature environments because of thermal acclimation
 responses, i.e. physiological changes that allow organisms to adjust to a
 new temperature following a temperature shift. 2. The goal of this study
 was to determine how thermal acclimation influences host resistance to
 infection and to test for parasite acclimation responses, which might
 differ from host responses in important ways. 3. We tested predictions of
 three, non-mutually exclusive hypotheses regarding thermal acclimation
 effects on infection of green frog tadpoles (Lithobates clamitans) by the
 trematode parasite Ribeiroia ondatrae with fully replicated
 controlled-temperature experiments. Trematodes or tadpoles were
 independently acclimated to a range of ‘acclimation temperatures’ prior to
 shifting them to new ‘performance temperatures’ for experimental
 infections. 4. Trematodes that were acclimated to intermediate
 temperatures (19–22 °C) had greater encystment success across temperatures
 than either cold- or warm-acclimated trematodes. However, host acclimation
 responses varied depending on the stage of infection (encystment vs.
 clearance): warm- (22–28 °C) and cold-acclimated (13–19 °C) tadpoles had
 fewer parasites encyst at warm and cold performance temperatures,
 respectively, whereas intermediate-acclimated tadpoles (19–25 °C) cleared
 the greatest proportion of parasites in the week following exposure. 5.
 These results suggest that tadpoles use different immune mechanisms to
 resist different stages of trematode infection, and that each set of
 mechanisms has unique responses to temperature variability. Our results
 highlight the importance of considering thermal responses of both
 parasites and hosts when predicting disease patterns in
 variable-temperature environments.
description: Altman et al. 2016 JAE
 tadpole acclimation dataData from the tadpole
 acclimation experimentAltman et al. 2016 JAE
 trematode acclimation dataData from the trematode
 acclimation experiment
DOI: 10.5061/dryad.v6sm8
title: Data from: New mud turtles (Kinosternidae, Kinosternon) from the Middle-Late Miocene of the United States

description: Kinosternon Spix, 1824, was widespread in xeric to savanna associated
 paleowetlands across North America during the middle–late Miocene and
 steadily diversified following its first occurrences in the Hemingfordian.
 In the middle Miocene, Kinosternon rincon n. sp. occurred in the late
 Barstovian Cerro Conejo Formation of north central New Mexico, perhaps
 concurrently with Kinosternon pojoaque Bourque 2012a from the Tesuque
 Formation. Subsequent late Miocene kinosternine fossils indicate that at
 least three potentially contemporaneous species existed throughout the
 Clarendonian. These are Kinosternon pannekollops n. sp., from the Ogallala
 Formation of northern Texas; Kinosternon wakeeniense, n. sp., from the
 Ogallala Formation of northwestern Kansas and Ash Hollow Formation of
 south-central Nebraska; and Kinosternon notolophus n. sp., from the
 Alachua and Statenville formations of northern Florida. Kinosternon rincon
 is phylogenetically nested between the Kinosternon flavescens (Agassiz,
 1857) group (=Platythyra Agassiz, 1857) and more derived Kinosternon
 including the Kinosternon subrubrum (Lacépède, 1788) group (=Thyrosternum
 Agassiz, 1857). Kinosternon pannekollops is recovered on the stem of the
 K. subrubrum group and is the oldest and largest member of that lineage.
 Kinosternon notolophus is readily differentiated from other Miocene
 Kinosternon in possessing a distinct dorsomedial keel on the nuchal and
 faint dorsolateral costal carination. The K. subrubrum group probably
 originated in the late Miocene savannas of the Great Plains and dispersed
 eastward via the Gulf Coastal Plain. An unnamed kinosternine taxon existed
 in the coastal plains of the eastern and southeastern United States during
 the Middle Miocene Climatic Optimum (with fossils from ~18 to 15 Ma), and
 disappeared from the region coincident with the end of that megathermal
 event.
description: Bourque matrix
 Revision2character/taxon matrix
 used in phylogenetic analysisBourque Appendix 1
 Revision2description of
 characters used in phylogenetic analysisBourque Appendix 2
 Revision2character/taxon matrix
 used in phylogenetic analysis (in Excel format)
DOI: 10.5061/dryad.9qk7d
title: Data from: Environmental selection is a main driver of divergence in house sparrows (Passer domesticus) in Romania and Bulgaria

description: Both neutral and adaptive evolutionary processes can cause population
 divergence, but their relative contributions remain unclear. We
 investigated the roles of these processes in population divergence in
 house sparrows (Passer domesticus) from Romania and Bulgaria, regions
 characterized by high landscape heterogeneity compared to Western Europe.
 We asked whether morphological divergence, complemented with genetic data
 in this human commensal species, was best explained by environmental
 variation, geographic distance, or landscape resistance—the effort it
 takes for an individual to disperse from one location to the other—caused
 by either natural or anthropogenic barriers. Using generalized
 dissimilarity modeling, a matrix regression technique that fits biotic
 beta diversity to both environmental predictors and geographic distance,
 we found that a small set of climate and vegetation variables explained up
 to ~30% of the observed divergence, whereas geographic and resistance
 distances played much lesser roles. Our results are consistent with
 signals of selection on morphological traits and of isolation by
 adaptation in genetic markers, suggesting that selection by natural
 environmental conditions shapes population divergence in house sparrows.
 Our study thus contributes to a growing body of evidence that adaptive
 evolution may be a major driver of diversification.
description: Environmental
 VariablesValues of the
 environmental variables at the sampling locations. Bio1-19 and elevation
 were obtained from WorldClim. Slope and aspect were calculated from
 elevation. Tree2001 (percent tree cover) and LAI variables were obtained
 from the Global Landcover facility. QSCAT variables were computed from raw
 data obtained from the NASA SCP data set. Road density was computed from
 the Digital Chart of the World. Human population density was obtained from
 the Gridded Population of the World data set. For detailed methods, please
 see the online supporting information.Morphological
 measurementsMorphological
 measurements for adult males and females collected in the
 field.Microsatellite
 genotypesMicrosatellite genotypes
 (fragment lengths). Two columns per locus; one for each allele. 0 = no
 data. Samples were collected in the field between 2007-2015. Allele
 calling performed with GeneMarker V2.4.1 (Softgenetics, State College, PA,
 USA).Microsatssub.xlsx