cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10808942
title: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

description: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and juveniles, estimation of heritability, trends in green up and simulations of allelic shifts included as:



GEBV-regression.Rmd

heritabilityEst.R

GreeningAnalysis.R

Simulated_selection_analysis.Rmd

Distinguishing the effects of selection from genetic drift.pdf


Data files:



S1 - phenotypic measurements for adult and juvenile trees

S2 - Effect sizes for SNPs used to calculate GEBV

S3 - Allelic frequencies of sites used to calculate GEBV

related_trees.csv - Predicted parentage of trees

gebv_model_df.csv - Data used for greenup calculations in GreeningAnalysis.R

maf1.pass2.miss25.snps.only.LD.vcf - Filtered file of high MAF SNPs used for parentage estimation

unlinked_sites.csv - unlinked sites used in GEBV-regression.Rmd

ebv_table_10000_250 - table of estimated breeding values in field trial populatio, used for heritability estimation

MP_eefects_MIA_and_MAA.csv - Data for plotting Figure 3 - Estimated effect size of the major and minor allele, plus standard error on the estimate
DOI: 10.5281/zenodo.10808943
title: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

description: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of trends in green up and simulations of allelic shifts included as:



GreeningAnalysis.R

Simulated_selection_analysis.Rmd


Data files:



S1 - phenotypic measurements for adult and juvenile trees

S2 - Effect sizes for SNPs used to calculate GEBV

S3 - Allelic frequencies of sites used to calculate GEBV

related_trees.csv

gebv_model_df.csv
DOI: 10.5281/zenodo.12733868
title: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

description: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and juveniles, estimation of heritability, trends in green up and simulations of allelic shifts included as:



GEBV-regression.Rmd

heritabilityEst.R

GreeningAnalysis.R

Simulated_selection_analysis.Rmd


Data files:



S1 - phenotypic measurements for adult and juvenile trees

S2 - Effect sizes for SNPs used to calculate GEBV

S3 - Allelic frequencies of sites used to calculate GEBV

related_trees.csv - Predicted parentage of trees

gebv_model_df.csv - Data used for greenup calculations in GreeningAnalysis.R

maf1.pass2.miss25.snps.only.LD.vcf - Filtered file of high MAF SNPs used for parentage estimation

unlinked_sites.csv - unlinked sites used in GEBV-regression.Rmd

ebv_table_10000_250 - table of estimated breeding values in field trial populatio, used for heritability estimation
DOI: 10.5281/zenodo.14289874
title: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

description: Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and juveniles, estimation of heritability, trends in green up and simulations of allelic shifts included as:



GEBV-regression.Rmd

heritabilityEst.R

GreeningAnalysis.R

Simulated_selection_analysis.Rmd

Distinguishing the effects of selection from genetic drift.pdf


Data files:



S1 - phenotypic measurements for adult and juvenile trees

S2 - Effect sizes for SNPs used to calculate GEBV

S3 - Allelic frequencies of sites used to calculate GEBV

related_trees.csv - Predicted parentage of trees

gebv_model_df.csv - Data used for greenup calculations in GreeningAnalysis.R

maf1.pass2.miss25.snps.only.LD.vcf - Filtered file of high MAF SNPs used for parentage estimation

unlinked_sites.csv - unlinked sites used in GEBV-regression.Rmd

ebv_table_10000_250 - table of estimated breeding values in field trial populatio, used for heritability estimation

MP_eefects_MIA_and_MAA.csv - Data for plotting Figure 3 - Estimated effect size of the major and minor allele, plus standard error on the estimate
DOI: 10.15468/dl.yph2zc
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetragonurus cuvieri Risso, 1810",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 165 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043538-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kyvc2
title: Occurrence Download

description: A dataset containing 150942 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psittacula eupatria (Linnaeus, 1766)"
 ]
}

 The dataset includes 150942 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043525-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3gt4b
title: Occurrence Download

description: A dataset containing 18672 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erodium cicutarium (L.) L'Hér. ex Aiton"
 ]
}

 The dataset includes 18672 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043539-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68jayg
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetronarce californica (Ayres, 1855)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043542-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6y753t
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus contorta Douglas"
 ]
}

 The dataset includes 84 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043541-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9nb5v
title: Occurrence Download

description: A dataset containing 3039 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea canephora Pierre ex A.Froehner"
 ]
}

 The dataset includes 3039 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043540-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhjec5
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((131.9197 47.54205,133.65228 47.54205,133.65228 49.27462,131.9197 49.27462,131.9197 47.54205))",
 "Geometry POLYGON((126.69781 42.09071,139.18985 42.09071,139.18985 58.20497,126.69781 58.20497,126.69781 42.09071))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043544-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47dkke
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erodium cicutarium L"
 ]
}

 The dataset includes 223 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043543-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34965/i11176
title: 20210133
DOI: 10.15468/dl.9p75y7
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetronarce nobiliana (Bonaparte, 1835)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 172 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043546-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2vy7c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus pinus-contortae C.P.Sm."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043547-241126133413365/datasets/export for details.
DOI: 10.15468/dl.dgmqc7
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea canephora Pierre"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043548-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34812/p9yf-gm87
title: Scottish Book Trade Index (SBTI)
DOI: 10.15468/dl.knec62
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erodium cicutarium (L.) Léman"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043549-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ez9ez
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thaleichthys pacificus (Richardson, 1836)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 137 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043550-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ppe4w
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyalomma rufipes C.L.Koch, 1844"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043552-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s5h9k
title: Occurrence Download

description: A dataset containing 3085 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Desmodium scorpiurus (Sw.) Desv. ex DC."
 ]
}

 The dataset includes 3085 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043554-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgdd48
title: Occurrence Download

description: A dataset containing 41527 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxodium distichum (L.) Rich."
 ]
}

 The dataset includes 41527 records from 566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043551-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/28286
title: Chandra X-ray Observatory ObsId 28286

description: The X-ray properties of the most luminous quasars with outflows
DOI: 10.6084/m9.figshare.28826924
title: Interview Shari PA 15.docx

description: This is the interview transcription.
DOI: 10.6084/m9.figshare.28826924.v1
title: Interview Shari PA 15.docx

description: This is the interview transcription.
DOI: 10.15468/dl.ztaccb
title: Occurrence Download

description: A dataset containing 2299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2299 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105676-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hlwnbs
title: Occurrence Download

description: A dataset containing 895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Database of Vascular Plants of Himalaya",
 "TaxonKey is Rosaceae"
 ]
}

 The dataset includes 895 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038417-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n95mut
title: Occurrence Download

description: A dataset containing 3729 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ancistrops strigilatus (Spix, 1825)"
 ]
}

 The dataset includes 3729 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057748-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c55v32
title: Occurrence Download

description: A dataset containing 187758 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Michoacán"
 ]
}

 The dataset includes 187758 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126782-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wiwlio
title: Occurrence Download

description: A dataset containing 4989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula alpinopilosa (Chaix) Breistr.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 4989 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038418-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g77eut
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cytisus eriocarpus Boiss."
 ]
}

 The dataset includes 64 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061899-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqrjb4
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is Panama",
 "Country is Belize",
 "Country is Guatemala",
 "Country is Honduras",
 "Country is El Salvador"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus corrugata Hook."
 ]
}

 The dataset includes 196 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158245-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4p6sy
title: Occurrence Download

description: A dataset containing 133683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula multiflora (Ehrh.) Lej.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 133683 records from 352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038423-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jq3xjq
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octolasmis cor (Aurivillius, 1892)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063006-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73fy3u
title: Occurrence Download

description: A dataset containing 2299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2299 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105687-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrcdhi
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactrocera xanthodes (Broun, 1904)"
 ]
}

 The dataset includes 81 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038423-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmn2e7
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Incilius cristatus (Wiegmann, 1833)",
 "Year 1980-2020"
 ]
}

 The dataset includes 101 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114943-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mbsck
title: Occurrence Download

description: A dataset containing 1581884 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1581884 records from 352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061900-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqzqcc
title: Occurrence Download

description: A dataset containing 20151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula nivea (Nathh.) DC.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 20151 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038425-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25q2s2
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anaphothrips dubius (Girault, 1926))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045230-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaae6z
title: Occurrence Download

description: A dataset containing 575081 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is New Caledonia"
 ]
}

 The dataset includes 575081 records from 626 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105720-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.