cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11789427.v1
title: Additional file 1 of Black soldier fly and gut health in broiler chickens: insights into the relationship between cecal microbiota and intestinal mucin composition

description: Additional file 1. Ingredients and chemical composition of the experimental diets. Mineral-vitamin premix: vitamin A (retinyl acetate), 12,500 IU; vitamin D3 (cholecalciferol), 3000 IU; vitamin E (DL-a-tocopheryl acetate), 60 IU; vitamin K (menadione sodium bisulfite), 1.02 mg; riboflavin, 2.0 mg; pantothenate, 8.0 mg; niacin, 6 mg; piridossin, 4 mg; folic acid, 0.5 mg; biotin, 0.10 mg; tiamin, 1.0 mg; vitamin B12, 20 mg; Mn, 120 mg; Zn, 80 mg; Fe, 52 mg; Cu, 15 mg; I, 1.5 mg; Se, 0.4 mg. AME = apparent metabolizable energy; CP = crude protein; EE = ether extract; CF = crude fiber; C = control; HI5 = 5% inclusion level of Hermetia illucens; HI10 = 10% inclusion level of Hermetia illucens; HI15 = 15% inclusion level of Hermetia illucens.
DOI: 10.6084/m9.figshare.11789400
title: Additional file 1 of Effect of long-term feeding of the Obudu natural honey and table sugar-sweetened diets on obesity and pro-inflammatory biomarkers in rats

description: Additional file 1. Raw data obtained in the study. This additional file contains all data generated during this study and their transposition into charts/figures. They include data for body weights, tissue/organ weights, diet consumed, blood glucose, serum leptin and tissue necrosis factor-alpha (TNF-α) as measured in both male and female animal groups. NB: There is no provision for such a file to be cited in the main text, rather, it is for reviewers and editors’ perusal.
DOI: 10.6084/m9.figshare.11789400.v1
title: Additional file 1 of Effect of long-term feeding of the Obudu natural honey and table sugar-sweetened diets on obesity and pro-inflammatory biomarkers in rats

description: Additional file 1. Raw data obtained in the study. This additional file contains all data generated during this study and their transposition into charts/figures. They include data for body weights, tissue/organ weights, diet consumed, blood glucose, serum leptin and tissue necrosis factor-alpha (TNF-α) as measured in both male and female animal groups. NB: There is no provision for such a file to be cited in the main text, rather, it is for reviewers and editors’ perusal.
DOI: 10.6084/m9.figshare.11789367
title: Metamorphism in the New England Orogen, eastern Australia: a review

description: This paper summarises current knowledge on metamorphism within the entire New England Orogen (NEO) of eastern Australia. Rocks recording metamorphic assemblages characteristic of each of the three metamorphic facies series (high, medium and low P/T) have been identified within the orogen. These include high P/T blueschists and eclogites, mid P/T orogenic metamorphism and low P/T contact aureoles and sub-regional high-temperature–low-pressure (HTLP) metamorphism (regional aureoles). Metamorphism is described as it relates to six tectonic phases of development of the NEO that together comprise two major cycles of compression–extension. Medium–high-grade contact metamorphism spans all six tectonic phases while low-grade burial and/or orogenic metamorphism has been identified for four of the six phases. In contrast, exposure of high P/T eclogites and blueschists, and generation of sub-regional low P/T metamorphism is restricted to extensional phases of the orogen. Hallmarks of the orogen are two newly identified zones of HTLP metamorphism, the older of which extends for almost the entire length of the orogen.KEY POINTSThe orogen is dominated by low-temperature rocks while high-temperature amphibolite to granulite facies rocks are restricted to small exposures in HTLP complexes and contact aureoles.Blueschist metamorphism falls into two categories; that associated with subduction during the Currabubula-Connors continental arc phase occurring at depths of ∼13–30 km; and the other of Cambrian–Ordovician age, exposed within a serpentinite melange and associated with blocks of eclogite. The eclogite, initially from depths of ∼75–90 km, appears to have been entrained in the deep crust for an extended period of geological time.A comprehensive review of contact metamorphism in the orogen is lacking and as studies on low-grade metamorphism are more extensive in the southern part of the orogen than the north, this highlights a second research gap. The orogen is dominated by low-temperature rocks while high-temperature amphibolite to granulite facies rocks are restricted to small exposures in HTLP complexes and contact aureoles. Blueschist metamorphism falls into two categories; that associated with subduction during the Currabubula-Connors continental arc phase occurring at depths of ∼13–30 km; and the other of Cambrian–Ordovician age, exposed within a serpentinite melange and associated with blocks of eclogite. The eclogite, initially from depths of ∼75–90 km, appears to have been entrained in the deep crust for an extended period of geological time. A comprehensive review of contact metamorphism in the orogen is lacking and as studies on low-grade metamorphism are more extensive in the southern part of the orogen than the north, this highlights a second research gap.
DOI: 10.6084/m9.figshare.11789367.v1
title: Metamorphism in the New England Orogen, eastern Australia: a review

description: This paper summarises current knowledge on metamorphism within the entire New England Orogen (NEO) of eastern Australia. Rocks recording metamorphic assemblages characteristic of each of the three metamorphic facies series (high, medium and low P/T) have been identified within the orogen. These include high P/T blueschists and eclogites, mid P/T orogenic metamorphism and low P/T contact aureoles and sub-regional high-temperature–low-pressure (HTLP) metamorphism (regional aureoles). Metamorphism is described as it relates to six tectonic phases of development of the NEO that together comprise two major cycles of compression–extension. Medium–high-grade contact metamorphism spans all six tectonic phases while low-grade burial and/or orogenic metamorphism has been identified for four of the six phases. In contrast, exposure of high P/T eclogites and blueschists, and generation of sub-regional low P/T metamorphism is restricted to extensional phases of the orogen. Hallmarks of the orogen are two newly identified zones of HTLP metamorphism, the older of which extends for almost the entire length of the orogen.KEY POINTSThe orogen is dominated by low-temperature rocks while high-temperature amphibolite to granulite facies rocks are restricted to small exposures in HTLP complexes and contact aureoles.Blueschist metamorphism falls into two categories; that associated with subduction during the Currabubula-Connors continental arc phase occurring at depths of ∼13–30 km; and the other of Cambrian–Ordovician age, exposed within a serpentinite melange and associated with blocks of eclogite. The eclogite, initially from depths of ∼75–90 km, appears to have been entrained in the deep crust for an extended period of geological time.A comprehensive review of contact metamorphism in the orogen is lacking and as studies on low-grade metamorphism are more extensive in the southern part of the orogen than the north, this highlights a second research gap. The orogen is dominated by low-temperature rocks while high-temperature amphibolite to granulite facies rocks are restricted to small exposures in HTLP complexes and contact aureoles. Blueschist metamorphism falls into two categories; that associated with subduction during the Currabubula-Connors continental arc phase occurring at depths of ∼13–30 km; and the other of Cambrian–Ordovician age, exposed within a serpentinite melange and associated with blocks of eclogite. The eclogite, initially from depths of ∼75–90 km, appears to have been entrained in the deep crust for an extended period of geological time. A comprehensive review of contact metamorphism in the orogen is lacking and as studies on low-grade metamorphism are more extensive in the southern part of the orogen than the north, this highlights a second research gap.
DOI: 10.6084/m9.figshare.11788950
title: DifferentialMethylation.bw

description: testaaaaaaaaa
DOI: 10.6084/m9.figshare.11788950.v1
title: DifferentialMethylation.bw

description: testaaaaaaaaa
DOI: 10.6084/m9.figshare.11788917
title: ESSC_WRT2

description: Dataset used in papers
DOI: 10.6084/m9.figshare.11788923
title: bimanual_dominance_data.mat

description: MAT file contains all 13 subjects worth of data from subjects holding on to a vibrating objects using the left and right wrists of a 1D dual-wrist interface (known as Hi5). The data is stored as a structure file, with the main data inside each cell array DataAll(1).Data. Each element in this cell array is from a single trial, with the column of the double array containing the following data:<br><br>% Column number of dataColTime = 1;ColTrial = 3;ColState = 4;ColObjectTargetAngle = 5;ColAngleG = 6;ColAngleY = 7;ColTorqueG = 8;ColTorqueY = 9;ColFCRRectG = 10;ColECRLRectG = 11;ColFCRRectY = 12;ColECRLRectY = 13;ColObjectAngle = 14;ColObjectVelocity = 15;ColMinSqueeze = 16;ColMaxSqueeze = 17;ColObjectHeight = 18;ColTrialSuccess = 19;ColPertType = 20;ColPertFreq = 21;ColPertAmp = 22;ColObjectMass = 24;ColViscosity = 25;ColObjectTorqueG = 26;ColObjectTorqueY = 27;
DOI: 10.6084/m9.figshare.11788923.v1
title: bimanual_dominance_data.mat

description: MAT file contains all 13 subjects worth of data from subjects holding on to a vibrating objects using the left and right wrists of a 1D dual-wrist interface (known as Hi5). The data is stored as a structure file, with the main data inside each cell array DataAll(1).Data. Each element in this cell array is from a single trial, with the column of the double array containing the following data:<br><br>% Column number of dataColTime = 1;ColTrial = 3;ColState = 4;ColObjectTargetAngle = 5;ColAngleG = 6;ColAngleY = 7;ColTorqueG = 8;ColTorqueY = 9;ColFCRRectG = 10;ColECRLRectG = 11;ColFCRRectY = 12;ColECRLRectY = 13;ColObjectAngle = 14;ColObjectVelocity = 15;ColMinSqueeze = 16;ColMaxSqueeze = 17;ColObjectHeight = 18;ColTrialSuccess = 19;ColPertType = 20;ColPertFreq = 21;ColPertAmp = 22;ColObjectMass = 24;ColViscosity = 25;ColObjectTorqueG = 26;ColObjectTorqueY = 27;
DOI: 10.6084/m9.figshare.11788917.v1
title: ESSC_WRT2

description: Dataset used in papers
DOI: 10.6084/m9.figshare.11788845
title: Exploratory Models

description: Exploratory models that are generated by this code:<br>https://github.com/stenhaug/kinedu_milestones/blob/master/data-models/models_exploratory.Rmd<br>
DOI: 10.6084/m9.figshare.11788851
title: Strawberry_Fields_Crop_Rows_Dataset.zip

description: RGB images and Annotated Images under training and testing folder for semantic segmentation used for crop row guidance.<br>
DOI: 10.6084/m9.figshare.11788845.v2
title: Exploratory Models

description: Exploratory models that are generated by this code:<br>https://github.com/stenhaug/kinedu_milestones/blob/master/data-models/models_exploratory.Rmd<br>
DOI: 10.6084/m9.figshare.11788851.v1
title: Frogn_Dataset.zip

description: RGB images and Annotated Images under training and testing folder for semantic segmentation used for crop row guidance.<br>
DOI: 10.6084/m9.figshare.11788818
title: Confirmatory Models

description: The bifactor model that is generated by this code:
DOI: 10.6084/m9.figshare.11788833
title: detect_CS network weights

description: The files are Pytorch network architectures with trained weights . These network are aimed at detecting complex spikes in extracellular recordings electrophysiological recording of purkinje cells. They accompany the dataset entitled "Extracellular recording of cerebellar Purkinje cells and labels of complex spikes from expert". Each files is a network trained with a leave-one-out approach. The name of a file corresponds to the name of the only cell from which the network has not been trained on.<br><br><br>
DOI: 10.6084/m9.figshare.11788836
title: Bronchiectasis in a lung cancer screening program.xlsx

description: Bronchiectasis and false positives in a lung cancer screening program. Lung cancer is one of the leading causes of cancer-related mortality. Screening with low dose computed tomography (LDCT) has proven to be effective in its detection, although with possible damages mainly due to a high rate of false positives. The finding of bronchiectasis could imply an increased risk of false positives Of the 3028 subjects included in the Lung Cancer Screening Program of the Clínica Universidad de Navarra, between 2000 and 2012, 354 cases with bronchiectasis were matched with 354 controls by age, sex and history of tobacco. We identify the nodules in baseline and follow up LDCT that required additional tests and were found not to be cancer (false positives) as well as those that were cancer<br> In baseline LDCT, there were more false positives in patients with bronchiectasis (26% vs 17%, p 0.003), which led to a higher proportion of follow-up LDCT and more indications of antibiotics. The number of false positives during follow-up was 129 in bronchiectasis vs 88 for controls (p 0.008), especially for unnecessary LDCT in each group. The biopsy was done in 11 in the bronchiectasis group and 9 in the controls, being diagnostic of cancer in 6 and 7 cases respectively, p 0.77 In a screening program, both baseline and follow-up LDCTs have more false positives in patients with bronchiectasis than controls. This has led to a greater number of unnecessary tests in individuals with bronchiectasis, mainly more indications of LDCT and antibiotic regimen, without more proportion of cancer. The individuals with the highest risk of false positives, such as those with bronchiectasis, should be well identified to minimize the risks involved
DOI: 10.6084/m9.figshare.11788845.v1
title: Kinedu Milestone Areas

description: Maps milestones to their areas (Physical, Social & Emotional, etc.)
DOI: 10.6084/m9.figshare.11788836.v1
title: Bronchiectasis in a lung cancer screening program.xlsx

description: Bronchiectasis and false positives in a lung cancer screening program. Lung cancer is one of the leading causes of cancer-related mortality. Screening with low dose computed tomography (LDCT) has proven to be effective in its detection, although with possible damages mainly due to a high rate of false positives. The finding of bronchiectasis could imply an increased risk of false positives Of the 3028 subjects included in the Lung Cancer Screening Program of the Clínica Universidad de Navarra, between 2000 and 2012, 354 cases with bronchiectasis were matched with 354 controls by age, sex and history of tobacco. We identify the nodules in baseline and follow up LDCT that required additional tests and were found not to be cancer (false positives) as well as those that were cancer<br> In baseline LDCT, there were more false positives in patients with bronchiectasis (26% vs 17%, p 0.003), which led to a higher proportion of follow-up LDCT and more indications of antibiotics. The number of false positives during follow-up was 129 in bronchiectasis vs 88 for controls (p 0.008), especially for unnecessary LDCT in each group. The biopsy was done in 11 in the bronchiectasis group and 9 in the controls, being diagnostic of cancer in 6 and 7 cases respectively, p 0.77 In a screening program, both baseline and follow-up LDCTs have more false positives in patients with bronchiectasis than controls. This has led to a greater number of unnecessary tests in individuals with bronchiectasis, mainly more indications of LDCT and antibiotic regimen, without more proportion of cancer. The individuals with the highest risk of false positives, such as those with bronchiectasis, should be well identified to minimize the risks involved
DOI: 10.6084/m9.figshare.11788794
title: Molecular dynamics simulations of coronavirus 2019-nCoV protease model in complex with G75 and G82 ligands (covalently bound)

description: Molecular dynamics simulations (500 ps MD at 310 K) of comparative model of novel coronavirus 2019-nCoV protease Mpro in complex with the covalently bound ligands G75 and G82. The starting position of the ligands has been respectively taken from 3SZN and 3TIU PDB structures.<br>The archives contain also an heatmap representing the protein-ligand contact frequencies. Green-boxed occurrences in the heatmap represent hydrogen bond formation during the simulation.
DOI: 10.6084/m9.figshare.11788818.v1
title: this is it

description: asdfasdf hjgjhg
DOI: 10.6084/m9.figshare.11788818.v3
title: Confirmatory Models

description: The bifactor model that is generated by this code:
DOI: 10.6084/m9.figshare.11788818.v2
title: Kinedu Norming Survey Raw Data

description: Raw survey data
DOI: 10.6084/m9.figshare.11788680
title: Hormonal and behavioural effects of motorboat noise on wild coral reef fish

description: The data from a field experiment exposing wild anemonefish pairs to either ambient reef sound playback or motorboat noise playback for either 30 min or 48 h. The data includes behaviours and hormones (cortisol, testosterone and 11-ketotesterone).<br>
DOI: 10.6084/m9.figshare.11788680.v1
title: Hormonal and behavioural effects of motorboat noise on wild coral reef fish

description: The data from a field experiment exposing wild anemonefish pairs to either ambient reef sound playback or motorboat noise playback for either 30 min or 48 h. The data includes behaviours and hormones (cortisol, testosterone and 11-ketotesterone).<br>
DOI: 10.6084/m9.figshare.11787474
title: Mutation 2020

description: Scientists have created many cost reduction tech-niques for mutation testing, and most of them reduce cost withminor losses of effectiveness. However, many of these techniquesare difficult to generalize, difficult to scale, or both. Publishedresults are usually limited to a modest collection of programs.Therefore, an open question is whether the results of a given costreduction technique on programs studied in the paper will holdtrue for other programs. This paper introduces a conceptualframework, namedSiMut, to support the cost reduction ofmutation testing based on historical data and program similarity.Given a new, untested programu, the central idea is applyingtouthe same cost reduction strategy applied to a groupGofprograms that are similar touand have already been tested withmutation, and check for consistency of results in terms of reducedcosts and quality of test sets.SiMutincludes activities to computeprogram abstractions and similarity. Based on this information,it supports the application of mutation cost reduction techniquesto bothGandu. This paper presents the concepts behindSiMut,a proof-of-concept implementation ofSiMut, and results from apilot study. Finally, we discuss some issues related to the use ofSiMut, focusing on the composition of a representative dataset toproperly explore the potential of our framework.
DOI: 10.6084/m9.figshare.11787402
title: CaseDataPMAPS2020

description: Two test systems are provided.
DOI: 10.6084/m9.figshare.11787474.v1
title: Mutation 2020

description: Scientists have created many cost reduction tech-niques for mutation testing, and most of them reduce cost withminor losses of effectiveness. However, many of these techniquesare difficult to generalize, difficult to scale, or both. Publishedresults are usually limited to a modest collection of programs.Therefore, an open question is whether the results of a given costreduction technique on programs studied in the paper will holdtrue for other programs. This paper introduces a conceptualframework, namedSiMut, to support the cost reduction ofmutation testing based on historical data and program similarity.Given a new, untested programu, the central idea is applyingtouthe same cost reduction strategy applied to a groupGofprograms that are similar touand have already been tested withmutation, and check for consistency of results in terms of reducedcosts and quality of test sets.SiMutincludes activities to computeprogram abstractions and similarity. Based on this information,it supports the application of mutation cost reduction techniquesto bothGandu. This paper presents the concepts behindSiMut,a proof-of-concept implementation ofSiMut, and results from apilot study. Finally, we discuss some issues related to the use ofSiMut, focusing on the composition of a representative dataset toproperly explore the potential of our framework.
DOI: 10.6084/m9.figshare.11787366
title: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.xlsx

description: The clinical perioperative data of patients performed laparoscopic distal pancreatectomy or laparoscopic spleen-preserving distal pancreatectomy with simulation by three-dimensional virtual endoscopy.
DOI: 10.6084/m9.figshare.11787402.v1
title: CaseDataPMAPS2020

description: Two test systems are provided.
DOI: 10.6084/m9.figshare.11787342
title: aspiratsioonid_pub.xls

description: Perioperative pulmonary aspiration in Tartu University Hospital
DOI: 10.6084/m9.figshare.11787339
title: Yasir Akbar ED data.xlsx

description: This is datasheet used for the Reasearch
DOI: 10.6084/m9.figshare.11787339.v1
title: Yasir Akbar ED data.xlsx

description: This is datasheet used for the Reasearch
DOI: 10.6084/m9.figshare.11787243
title: Genotypic distribution of three polymorphisms of IL-10 in patients with PEX, PEXG, and POAG.xlsx

description: Genotypic distribution of three polymorphisms -592C/A (rs1800872), -819C/T (rs1800871) and -1082A/G (rs1800896) of IL-10 gene promoter in patients with pseudoexfoliation syndrome (PEX), pseudoexfoliative glaucoma (PEXG), and primary open-angle glaucoma (POAG)
DOI: 10.6084/m9.figshare.11787243.v1
title: Genotypic distribution of three polymorphisms -592CA, -819CT and -1082AG of IL-10 gene promoter in the pathiets with PEX, PEXG, and POAG.xlsx

description: Genotypic distribution of three polymorphisms -592C/A (rs1800872), -819C/T (rs1800871) and -1082A/G (rs1800896) of IL-10 gene promoter in patients with pseudoexfoliation syndrome (PEX), pseudoexfoliative glaucoma (PEXG), and primary open-angle glaucoma (POAG)
DOI: 10.6084/m9.figshare.11787252.v1
title: The annotation files for the draft genome of the Tibetan black bear (Ursus thibetanus thibetanus)

description: <b>Tibetan black bear genome annotation file (gff3 format)</b>Tibetanblackbear.gff.gz<br><b>The predicted protein sequences of the annotations for the genome of Tibetan black bear (fasta format)</b>Tibetanblackbear.pep.fasta.gz<br><b>The predicted protein-codng sequences of the annotations for the genome of Tibetan black bear (fasta format)</b>Tibetanblackbear.cds.fasta.gz
DOI: 10.6084/m9.figshare.11787210
title: scRNAseq benchmark datasets with known cell labels

description: scRNAseq benchmark datasets with known cell labels used with for the pipeComp paper. Each dataset is saved as a SingleCellExperiment RDS. The true labels are in the `phenoid` colData column.<br>
DOI: 10.6084/m9.figshare.11787219
title: Data to Flow Resistance and Energy Dissipation in Supercritical Air-Water Flows Down Vegetated Chutes

description: Experimental data of air-water flow measurements with phase-detection intrusive probes on several vegetated 1:3 sloped chutes
DOI: 10.6084/m9.figshare.11787219.v1
title: Data to Flow Resistance and Energy Dissipation in Supercritical Air-Water Flows Down Vegetated Chutes

description: Experimental data of air-water flow measurements with phase-detection intrusive probes on several vegetated 1:3 sloped chutes
DOI: 10.6084/m9.figshare.11787180
title: Untitled Item

description: Dateset of the bg paper<br>
DOI: 10.6084/m9.figshare.11787192
title: test.xlsx

description: test
DOI: 10.6084/m9.figshare.11787180.v1
title: Untitled Item

description: Dateset of the bg paper<br>
DOI: 10.6084/m9.figshare.11787192.v1
title: test.xlsx

description: test