cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6443969
title: Additional file 3: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S3. Gene enrichment analysis of DEGs from the CCHCR1-HEK293 cell lines based on RNAseq. Cell line-specific gene enrichment analyses of DEGs (Additional file 2: Table S2) from the CCHCR1-overexpressing cell lines Iso1Non-risk (1 N), Iso1Risk (1R), Iso3Non-risk (3 N), and Iso3Risk (3R) when compared with wild type and vector controls. The gene enrichment analysis of DEGs that were shared by the four CCHCR1 cell lines (Intersection). Analyses were done using the KEGG pathway analysis (WebGestaltR and WebGestalt), and GO and cluster analyses from DAVID. Gene enrichment of Iso3Non-Risk DEGs in the mRNA surveillance pathway is shown (KEGG pathway figure and a list of genes). (XLSX 1183 kb)
DOI: 10.6084/m9.figshare.6443969.v1
title: Additional file 3: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S3. Gene enrichment analysis of DEGs from the CCHCR1-HEK293 cell lines based on RNAseq. Cell line-specific gene enrichment analyses of DEGs (Additional file 2: Table S2) from the CCHCR1-overexpressing cell lines Iso1Non-risk (1 N), Iso1Risk (1R), Iso3Non-risk (3 N), and Iso3Risk (3R) when compared with wild type and vector controls. The gene enrichment analysis of DEGs that were shared by the four CCHCR1 cell lines (Intersection). Analyses were done using the KEGG pathway analysis (WebGestaltR and WebGestalt), and GO and cluster analyses from DAVID. Gene enrichment of Iso3Non-Risk DEGs in the mRNA surveillance pathway is shown (KEGG pathway figure and a list of genes). (XLSX 1183 kb)
DOI: 10.6084/m9.figshare.6443957
title: Additional file 5: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the gain main effect. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 987 kb)
DOI: 10.6084/m9.figshare.6443957.v1
title: Additional file 5: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the gain main effect. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 987 kb)
DOI: 10.6084/m9.figshare.6443951
title: Additional file 2: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S2. Differentially expressed genes of RNAseq from the comparisons between the CCHCR1-HEK293 cell lines and controls. Up- and downregulated DEGs of CCHCR1-overexpressing cell lines Iso1Non-risk (1Â N), Iso1Risk (1R), Iso3Non-risk (3Â N), and Iso3Risk (3R) when compared with controls (wild type and vector transfected cells). (XLSX 1215 kb)
DOI: 10.6084/m9.figshare.6443948
title: Additional file 7: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S3. Characteristics of all circular RNAs identified in this study. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6443951.v1
title: Additional file 2: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S2. Differentially expressed genes of RNAseq from the comparisons between the CCHCR1-HEK293 cell lines and controls. Up- and downregulated DEGs of CCHCR1-overexpressing cell lines Iso1Non-risk (1Â N), Iso1Risk (1R), Iso3Non-risk (3Â N), and Iso3Risk (3R) when compared with controls (wild type and vector transfected cells). (XLSX 1215 kb)
DOI: 10.6084/m9.figshare.6443948.v1
title: Additional file 7: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S3. Characteristics of all circular RNAs identified in this study. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6443942
title: Additional file 4: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the gain by intake interaction effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in low gain, high intake. (XLSX 1218 kb)
DOI: 10.6084/m9.figshare.6443942.v1
title: Additional file 4: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the gain by intake interaction effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in low gain, high intake. (XLSX 1218 kb)
DOI: 10.6084/m9.figshare.6443936
title: Additional file 1: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S1. Microarray data and gene enrichment analysis of the CCHCR1 Iso1 cell lines. Gene expression profiling data of microarrays from the Isoform 1 CCHCR1-HEK293 cell lines. Gene enrichment analysis of differentially expressed genes using the KEGG pathway analysis of WebGestaltR and functional cluster analysis of the DAVID. (XLSX 305 kb)
DOI: 10.6084/m9.figshare.6443936.v1
title: Additional file 1: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S1. Microarray data and gene enrichment analysis of the CCHCR1 Iso1 cell lines. Gene expression profiling data of microarrays from the Isoform 1 CCHCR1-HEK293 cell lines. Gene enrichment analysis of differentially expressed genes using the KEGG pathway analysis of WebGestaltR and functional cluster analysis of the DAVID. (XLSX 305 kb)
DOI: 10.6084/m9.figshare.6443924
title: Additional file 3: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the intake main effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in high intake. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. (XLSX 1241 kb)
DOI: 10.6084/m9.figshare.6443924.v1
title: Additional file 3: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the intake main effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in high intake. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. (XLSX 1241 kb)
DOI: 10.6084/m9.figshare.6443912
title: Additional file 2: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the gain main effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in high gain. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. (XLSX 1224 kb)
DOI: 10.6084/m9.figshare.6443909
title: Additional file 4: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S2. Characteristics of all lncNATs identified in this study. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.6443912.v1
title: Additional file 2: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: DEGs associated with the gain main effect in the individual cohort and meta analyses. Genes are ordered by adjusted meta-P-value. The individual cohort cells for DEGs identified in the meta-analysis are colored according to the sign of their log2 fold change, where green indicates up-regulation and red indicates down-regulation in high gain. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. (XLSX 1224 kb)
DOI: 10.6084/m9.figshare.6443909.v1
title: Additional file 4: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S2. Characteristics of all lncNATs identified in this study. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.6443894
title: Additional file 1: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: (A) Cohort and age of animals selected for this study. (B) Breed percentages of phenotypic quadrants for each cohort (HH = high gain, high intake; LH = low gain, high intake; LL = low gain, low intake; HL = high gain, low intake). (C) Rationale for exclusion of animals within each cohort. (D) Sequencing statistics. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6443894.v1
title: Additional file 1: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: (A) Cohort and age of animals selected for this study. (B) Breed percentages of phenotypic quadrants for each cohort (HH = high gain, high intake; LH = low gain, high intake; LL = low gain, low intake; HL = high gain, low intake). (C) Rationale for exclusion of animals within each cohort. (D) Sequencing statistics. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6443891
title: Additional file 3: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S1. Characteristics of all lincRNAs identified in this study. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.6443891.v1
title: Additional file 3: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S1. Characteristics of all lincRNAs identified in this study. (XLSX 181 kb)
DOI: 10.6084/m9.figshare.6443861
title: Additional file 6 of Distinctive characters of Nostoc genomes in cyanolichens

description: Orthologous groups enriched in different clades. (XLS 756 kb)
DOI: 10.6084/m9.figshare.6443861.v1
title: Additional file 6 of Distinctive characters of Nostoc genomes in cyanolichens

description: Orthologous groups enriched in different clades. (XLS 756 kb)
DOI: 10.6084/m9.figshare.6443843
title: Additional file 5 of Distinctive characters of Nostoc genomes in cyanolichens

description: Comparison of the cyanobacterial core and shell gene set to Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’. (XLS 172 kb)
DOI: 10.6084/m9.figshare.6443843.v1
title: Additional file 5 of Distinctive characters of Nostoc genomes in cyanolichens

description: Comparison of the cyanobacterial core and shell gene set to Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’. (XLS 172 kb)
DOI: 10.6084/m9.figshare.6443828
title: Additional file 4 of Distinctive characters of Nostoc genomes in cyanolichens

description: Comparison of the minimal bacterial gene set to Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’. (XLS 61 kb)
DOI: 10.6084/m9.figshare.6443828.v1
title: Additional file 4 of Distinctive characters of Nostoc genomes in cyanolichens

description: Comparison of the minimal bacterial gene set to Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’. (XLS 61 kb)
DOI: 10.6084/m9.figshare.6443816
title: Additional file 3 of Distinctive characters of Nostoc genomes in cyanolichens

description: Proteins encoded in 10 most prominent locally collinear blocks in Nostoc punctiforme PCC 73102, Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’, identified by Mauve. (XLS 84 kb)
DOI: 10.6084/m9.figshare.6443816.v1
title: Additional file 3 of Distinctive characters of Nostoc genomes in cyanolichens

description: Proteins encoded in 10 most prominent locally collinear blocks in Nostoc punctiforme PCC 73102, Nostoc sp. N6 and Nostoc sp. ‘Lobaria pulmonaria cyanobiont’, identified by Mauve. (XLS 84 kb)
DOI: 10.6084/m9.figshare.6443789
title: Additional file 2: of Expression of glycolytic enzymes in ovarian cancers and evaluation of the glycolytic pathway as a strategy for ovarian cancer treatment

description: TMA dataset. Mean AQUA expression values for GLUT1, LDHA, HKII and PKM2 in 380 ovarian cancer samples. Histology and stage are shown for individual tumours. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.6443789.v1
title: Additional file 2: of Expression of glycolytic enzymes in ovarian cancers and evaluation of the glycolytic pathway as a strategy for ovarian cancer treatment

description: TMA dataset. Mean AQUA expression values for GLUT1, LDHA, HKII and PKM2 in 380 ovarian cancer samples. Histology and stage are shown for individual tumours. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.6443783
title: Additional file 1 of Distinctive characters of Nostoc genomes in cyanolichens

description: Nostocales strains used in this study. (XLS 44 kb)
DOI: 10.6084/m9.figshare.6443783.v1
title: Additional file 1 of Distinctive characters of Nostoc genomes in cyanolichens

description: Nostocales strains used in this study. (XLS 44 kb)
DOI: 10.6084/m9.figshare.6443750
title: MOESM2 of RNAi-dependent heterochromatin assembly in fission yeast Schizosaccharomyces pombe requires heat-shock molecular chaperones Hsp90 and Mas5

description: Additional file 2: Table S1. Strains used in this study. Table S2. Primers used in this study. Table S3. Transcription related factors detected in massspectrometry analysis. Table S4. List of candidate genes for silencing factors suggested by massspectrometry.
DOI: 10.6084/m9.figshare.6443750.v1
title: MOESM2 of RNAi-dependent heterochromatin assembly in fission yeast Schizosaccharomyces pombe requires heat-shock molecular chaperones Hsp90 and Mas5

description: Additional file 2: Table S1. Strains used in this study. Table S2. Primers used in this study. Table S3. Transcription related factors detected in massspectrometry analysis. Table S4. List of candidate genes for silencing factors suggested by massspectrometry.
DOI: 10.6084/m9.figshare.6443600
title: Additional file 5: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire consensus meeting. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.6443561
title: Additional file 3: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire third email round. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6443561.v1
title: Additional file 3: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire third email round. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6443540
title: Additional file 2: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire second email round. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.6443519
title: Additional file 1: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire first email round. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6443519.v1
title: Additional file 1: of Standardised data reporting from pre-hospital advanced airway management â a nominal group technique update of the Utstein-style airway template

description: Questionnaire first email round. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6442982
title: Iwahashi_suppl.pdf

description: Supplemental Data for Endocrinology
DOI: 10.6084/m9.figshare.6442982.v1
title: Iwahashi_suppl.pdf

description: Supplemental Data for Endocrinology
DOI: 10.6084/m9.figshare.6442982.v2
title: Iwahashi_suppl.pdf

description: Supplemental Data for Endocrinology
DOI: 10.6084/m9.figshare.6442796.v1
title: Data on forest regeneration after catastrophic windthrow in the headwater region of the Ishikari River, Hokkaido, Japan

description: Details of the data are described in:ITÔ,Hiroki; NAKANISHI, Atsushi; TSUYAMA, Ikutaro; SEKI, Takeshi, IIDA, Shigeo; KAWAHARA, Takayuki (2018) Data on forest regeneration after catastrophic windthrow in the headwater region of the Ishikari River, Hokkaido, Japan. Bulletin of FFPRI 17: 265–272 (in Japanese with English summary).<br>Table S1.txt: Tab delimitated text file (UTF-8, LF) containing the temporal changes in vegetation. The structure is as follows:<br>Field name: DescriptionBelt: Numerical identifier of the study belt.Quadrat: Numerical identifier of the quadrat in each belt.Layer: Position in vertical layer (canopy, subcanopy, shrub, herb, vine, moss).Year: Survey year; The survey of Belt [38] in 1988 was conducted in 1989 in real.Date: Survey date; If the month or day was unclear, this filed is described up to the year or month, respectively.Scientific_name: Scientific name of the species.Japanese_name: Japanese name of the species.Cover: Rank of the vegetation coverage (+: 0–0.01, 1: 0.01–0.1, 2: 0.1–0.25, 3: 0.25–0.5, 4: 0.5–0.75, 5: 0.75–1).<br>Table S2: Tab delimitated text file (UTF-8, LF) containing the temporal changes in trees. The structure is as follows:<br>Field name: DescriptionID: Numerical identifier of the stem.Individual_ID: Numerical identifier of the individual.Belt: Numerical identifier of the survey belt.X: Location along the X axis in the belt (m).Y: Location along the Y axis in the belt (m).Scientific_name: Scientific name of the species.Japanese_name: Japanese name of the species.First: The first year that the stem was observed.Last: The last year that the stem was observed alive; for living stems, the last survey year is assigned to this field.H_1993: Height at 1993 (m); NA for missing data.D_1993: Diameter at breast height in 1993 (cm).H_1998: Height at 1998 (m); NA for missing data.D_1998: Diameter at breast height in 1998 (cm).H_2002: Height at 2002 (m).D_2002: Diameter at breast height in 2002 (cm).H_2009: Height at 2009 (m); NA for missing data.D_2009: Diameter at breast height in 2009 (cm).H_2017: Height at 2017 (m).D_2017: Diameter at breast height in 2017 (cm).<br>
DOI: 10.6084/m9.figshare.6441818
title: Bleaching scores - laboratory experiments

description: This contains the raw bleaching scores for the seaweed Gracilaria vermiculophylla from native and non-native (introduced) populations.<br>assay (heat, cold or salinity assays)ind.type (common-garden vs field-collected samples)pop (3-letter abbreviation - see metadata from Sotka et al. 2018 Evolutionary Applications)ind (individual ID)trt (levels of treatment)day (day 0, 2, 4 ,6, 8 after treatment started)bleach.score (1= healthy, 2 = partially bleaching, 3 = bleached)<br><br>
DOI: 10.6084/m9.figshare.6441818.v1
title: Bleaching scores - laboratory experiments

description: This contains the raw bleaching scores for the seaweed Gracilaria vermiculophylla from native and non-native (introduced) populations.<br>assay (heat, cold or salinity assays)ind.type (common-garden vs field-collected samples)pop (3-letter abbreviation - see metadata from Sotka et al. 2018 Evolutionary Applications)ind (individual ID)trt (levels of treatment)day (day 0, 2, 4 ,6, 8 after treatment started)bleach.score (1= healthy, 2 = partially bleaching, 3 = bleached)<br><br>
DOI: 10.6084/m9.figshare.6438686
title: Table S1.xlsx

description: Dataset for manuscript: Functional trait tradeoffs and species abundance: insights from a multi-decadal study
DOI: 10.6084/m9.figshare.6438686.v1
title: Table S1.xlsx

description: Dataset for manuscript: Functional trait tradeoffs and species abundance: insights from a multi-decadal study
DOI: 10.6084/m9.figshare.6434627
title: Why the term 'Article Processing Charge' is misleading

description: Infographic based on Jon Tennant's blog post listed below.