cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14784837
title: Supplementary Material for: Teratomatous Elements in Orchiectomy Specimens Are Associated with a Reduced Relapse-Free Survival in Metastasized Testicular Germ Cell Tumors

description: <b><i>Introduction:</i></b> The impact of teratomatous elements in orchiectomy specimens of metastasized testicular germ cell tumors (TGCT) regarding oncological outcome is still unclear. <b><i>Methods:</i></b> We performed a retrospective analysis including 146 patients with metastasized TGCT analysing patient characteristics. <b><i>Results:</i></b> Twenty-six (18%) of all patients showed teratomatous elements in the orchiectomy specimens. TGCT with teratomatous elements showed a significantly higher frequency of clinical-stage 2C-3 disease (73 vs. 49%, <i>p</i> = 0.031), visceral metastases (58 vs. 32%, <i>p</i> = 0.015), and poor prognosis (<i>p</i> = 0.011) than TGCT without teratomatous elements. Teratoma-containing TGCT revealed a significantly higher rate of post-chemotherapy retroperitoneal lymph node dissection (PC-RPLND, 54 vs. 32%, <i>p</i> = 0.041), with teratomatous elements being more often present in the PC-RPLND specimens (43 vs. 11%, <i>p</i> = 0.020) than nonteratoma-containing primaries. In the Kaplan-Meier estimates, the presence of teratomatous elements in orchiectomy specimens was associated with a significantly reduced relapse-free survival (RFS) (<i>p</i> = 0.049) during a median follow-up of 36 months (10–115.5). <b><i>Conclusions:</i></b> The presence of teratomatous elements in orchiectomy specimens is associated with an advanced tumor stage, worse treatment response as well as a reduced RFS in metastasized TGCT. Consequently, the presence of teratomatous elements might act as a reliable stratification tool for treatment decision in TGCT patients.
DOI: 10.6084/m9.figshare.14778750
title: Brain MRI Dataset

description: This dataset was curated in collaboration between the Computer Science and Engineering Department, University of Dhaka and the National Institute of Neuroscience, Bangladesh. It comprise 5,285 T1-weighted contrast- enhanced brain MRI images belonging to 38 categories. This work is accompanied by a paper found here http://arxiv.org/abs/2106.07333<br>
DOI: 10.5281/zenodo.4916469
title: snpQT reference data

description: This dataset is a collection of other publicly available data, formatted for use with the snpQT pipeline, including: An extra filtered 1,000 genome project plink2 dataset initially downloaded from (http://dx.doi.org/10.5524/100516) for population stratification EBI's latest release of 1,000 human genome VCF files for imputation and phasing (along with index files) Reference FASTA, VCF and chain files for fixing strand issues, imputation, phasing and human genome build conversion A TXT file including the high linkage disequilibrium regions in the human genome in hg37 Auxiliary TXT files for intermediate snpQT processes
DOI: 10.5281/zenodo.4916468
title: snpQT reference data

description: This dataset is a collection of other publicly available data, formatted for use with the snpQT pipeline, including: An extra filtered 1,000 genome project plink2 dataset initially downloaded from (http://dx.doi.org/10.5524/100516) for population stratification EBI's latest release of 1,000 human genome VCF files for imputation and phasing (along with index files) Reference FASTA, VCF and chain files for fixing strand issues, imputation, phasing and human genome build conversion A TXT file including the high linkage disequilibrium regions in the human genome in hg37 Auxiliary TXT files for intermediate snpQT processes
DOI: 10.5281/zenodo.4955508
title: Video Analysis Scale of Engagement (VASE) project: data set

description: This file contains the validity testing and rating data from the Video Analysis Scale of Engagement (VASE) project, published in 2020 by <em>Wellcome Open Research, 5</em>(230).https://wellcomeopenresearch.org/articles/5-230/v2
description: This work is part of the Created Out of Mind research programme. Created Out of Mind was funded as 'Created Out of Mind: Shaping Perceptions of Dementias' [200783] by the Wellcome Trust as a part of the Hub Award. (Principal Investigator S.J. Crutch; Core Group: P. Ball, P.M. Camic, C. Evans, N. Fox, C. Murphy, F. Walsh, J. West, G. Windle).
DOI: 10.5281/zenodo.4001111
title: Video Analysis Scale of Engagement (VASE) project: data set

description: This file contains the validity testing and rating data from the Video Analysis Scale of Engagement (VASE) project, published in 2020 by <em>Wellcome Open Research, 5</em>(230).https://wellcomeopenresearch.org/articles/5-230/v2
description: This work is part of the Created Out of Mind research programme. Created Out of Mind was funded as 'Created Out of Mind: Shaping Perceptions of Dementias' [200783] by the Wellcome Trust as a part of the Hub Award. (Principal Investigator S.J. Crutch; Core Group: P. Ball, P.M. Camic, C. Evans, N. Fox, C. Murphy, F. Walsh, J. West, G. Windle).
DOI: 10.18170/dvn/ihroue
title: pkuh6_mir137

description: SNP for pkuh6_mir137
DOI: 10.5281/zenodo.4955569
title: The Potential of Serum Amylase Level as an Indicator for Type 2 Diabetes Mellitus: A Systematic Review

description: This file covers the complete appendices section for the aforementioned systematic review.
DOI: 10.5281/zenodo.4955568
title: The Potential of Serum Amylase Level as an Indicator for Type 2 Diabetes Mellitus: A Systematic Review

description: This file covers the complete appendices section for the aforementioned systematic review.
DOI: 10.5281/zenodo.4782778
title: Original CT data for the paper entitled "Exites in Cambrian arthropods and homology of arthropod limb branches".

description: Original CT data for the paper entitled "Exites in Cambrian arthropods and homology of arthropod limb branches".
DOI: 10.25625/fksrmx/ywlqjk
title: Gasfluxes.tab

description: Gasfluxes from the automatic incubation experiment
DOI: 10.25625/fksrmx/j33qxg
title: Soil data.tab

description: Date of soil analysis at end of experiment
DOI: 10.25625/fksrmx/1frdsm
title: Denitrifier method.tab

description: Results of the denitrifier method
DOI: 10.25625/fksrmx/vs9xxf
title: N2O-Isotopomers.tab

description: Data of N2O isotopomers
DOI: 10.25625/fksrmx/8tpffl
title: Litter 13C.tab

description: 13CO2 of incubation with plant litter only (supplementary)
DOI: 10.25625/fksrmx/vmzodk
title: 13CO2.tab

description: 13CO2 data
DOI: 10.25625/fksrmx
title: Data for: Carbon availability and nitrogen mineralization control denitrification rates and product stoichiometry during initial maize litter decomposition

description: This dataset contains the data generated for the publication: Rummel et al., 2021, Carbon availability and nitrogen mineralization control denitrification rates and product stoichiometry during initial maize litter decomposition, Applied Sciences
DOI: 10.6084/m9.figshare.13398065.v1
title: Expression of 197 surface markers and 462 mRNAs in 15281 cells from blood and bone marrow from a young healthy donor

description: R data archive containing the seurat v3 object Integration_200AB<br><b><br>ASSAYS</b>:AB: Antibody expression dataRNA: mRNA expression dataBOTH: Antibody and mRNA expression matrices concatenatedintegrated: Antibody and mRNA expression matrices were concatenated and data was integrated across the blood and bone marrow sample using scanorama<br><b>DIMENSIONALITY REDUCTION</b>MOFA: Multi-OMICS factor analysis to integrate AB and RNA data. MOFA was run on scanorama-integrated data and served as input for clustering and further dimensionality reduction.MOFAUMAP: UMAP performed on MOFA dimensions. Display used in the manuscript.<br>MOFATSNE: UMAP performed on MOFA dimensions.<br><br><b>METADATA</b>Batch: Sample1 (Bone marrow) or Sample2 (Blood)<br>
DOI: 10.6084/m9.figshare.14784879
title: Dataset of endogenized phage genes in Bacteroides thetaiotaomicron strain 7330

description: This work presents the set of endogenized phage genes in <i>Bacteroides thetaiotaomicron </i>strain 7330. Original data for the dataset was derived from annotated genome file of the microbe downloaded from GenBank, which was parsed and searched by an in-house MATLAB genome analysis software. The dataset comprises gene name, gene function, and gene sequence of each endogenized phage gene in the microbe. Overall, the data should serve as useful starter for initiating understanding of why particular phage genes remain endogenized in the host genome, and deciphering how evolutionary forces and host transposase has reshaped endogenized phage genes.
DOI: 10.6084/m9.figshare.14784879.v1
title: Dataset of endogenized phage genes in Bacteroides thetaiotaomicron strain 7330

description: This work presents the set of endogenized phage genes in <i>Bacteroides thetaiotaomicron </i>strain 7330. Original data for the dataset was derived from annotated genome file of the microbe downloaded from GenBank, which was parsed and searched by an in-house MATLAB genome analysis software. The dataset comprises gene name, gene function, and gene sequence of each endogenized phage gene in the microbe. Overall, the data should serve as useful starter for initiating understanding of why particular phage genes remain endogenized in the host genome, and deciphering how evolutionary forces and host transposase has reshaped endogenized phage genes.
DOI: 10.5517/ccdc.csd.cc24lcjn
title: CCDC 1983861: Experimental Crystal Structure Determination

description: Related Article: Jyoti Yadav, Dibya Jyoti Mondal, Sanjit Konar|2021|Chem.Commun.|57|5925|doi:10.1039/D1CC01160J
DOI: 10.5517/ccdc.csd.cc254svz
title: CCDC 2000611: Experimental Crystal Structure Determination

description: Related Article: Montserrat Ferrer, Albert Gutiérrez, Manuel Martínez, Cristiana Da Silva, Adelino V. G. Netto, Laura Rodríguez, Guillermo Romo-Islas, Fangfang Pan, Kari Rissanen|2021|Dalton Trans.|50|8154|doi:10.1039/D1DT00402F
DOI: 10.21227/a7x0-ng19
title: Feasibility and Adaptability of ATLAS 2030 for CP data

description: Cerebral Palsy (CP), the most common motor disability in childhood, affects individual´s motor skills, movement, and posture. This results in limited activity and a low social participation. Walking has well-recognized physiological and functional benefits. For this purpose, rehabilitation focused on Robot-Assisted Gait Training (RAGT) has shown to improve their mobility and it is increasingly being used in pediatric neurorehabilitation to complement conventional physical therapy. In this case, a pilot study has been conducted to assess the feasibility and adaptability of ATLAS 2030 exoskeleton to be used in children with CP. Moreover, some state variables and electromyography have been analyzed as a secondary objective. Nine children with CP between 3 and 9 years old and with Gross Motor Function Classification System (GMFCS) levels III-V received RAGT with ATLAS 2030 during one session. All modes of use of the exoskeleton were tested: forward and backward walking, gait in passive and active modes.The average time of use was 32.4 ± 7.2 minutes. Nofalls or adverse events that seriously compromised the health of the patients were reported.Furthermore, adductor spasticity was significantly reduced after the use of the exoskeleton (p = 0.04) and most joint limits were reduced, showing statistically significant differences for hip (p = 0.03) and popliteal (p = 0.001) angles.To conclude, ATLAS 2030 pediatric exoskeleton has been demonstrated to be feasible and adaptable for children with cerebral palsy.However, medium or long-term studies on safety and efficacy should be conducted to verify these results.
DOI: 10.5517/ccdc.csd.cc254sw0
title: CCDC 2000612: Experimental Crystal Structure Determination

description: Related Article: Montserrat Ferrer, Albert Gutiérrez, Manuel Martínez, Cristiana Da Silva, Adelino V. G. Netto, Laura Rodríguez, Guillermo Romo-Islas, Fangfang Pan, Kari Rissanen|2021|Dalton Trans.|50|8154|doi:10.1039/D1DT00402F
DOI: 10.5517/ccdc.csd.cc254sx1
title: CCDC 2000613: Experimental Crystal Structure Determination

description: Related Article: Montserrat Ferrer, Albert Gutiérrez, Manuel Martínez, Cristiana Da Silva, Adelino V. G. Netto, Laura Rodríguez, Guillermo Romo-Islas, Fangfang Pan, Kari Rissanen|2021|Dalton Trans.|50|8154|doi:10.1039/D1DT00402F
DOI: 10.5517/ccdc.csd.cc254sy2
title: CCDC 2000614: Experimental Crystal Structure Determination

description: Related Article: Montserrat Ferrer, Albert Gutiérrez, Manuel Martínez, Cristiana Da Silva, Adelino V. G. Netto, Laura Rodríguez, Guillermo Romo-Islas, Fangfang Pan, Kari Rissanen|2021|Dalton Trans.|50|8154|doi:10.1039/D1DT00402F
DOI: 10.17632/dsyp24db7h.1
title: INFLAMMATORY BIOMARKERS IN INDUCED SPUTUM FROM YOUNG CHILDREN WITH CYSTIC FIBROSIS

description: Background: In adults with cystic fibrosis (CF), induced sputum (IS) is a minimally invasive alternative to bronchoalveolar lavage (BAL) to monitor airway inflammation. Here, we investigated whether IS could yield biomarkers of early disease in young children with CF. Methods: We collected IS, BAL (right middle lobe and lingula) and blood, and performed chest computed tomography (CT) scans from 2-year-olds with CF (N=11) within a single visit. Molecular biomarkers included 20 immune mediators and soluble neutrophil elastase (NE). Cellular biomarkers consisted in frequency and phenotype (including surface NE) of T cells, monocytes / macrophages and neutrophils. Results: Six mediators were correlated between IS and BAL. Eight mediators showed similar levels in IS and BAL, including GRO-alpha, IL-1alpha, IL-6, IL-8, IP-10, M-CSF and VEGF. Four mediators were higher in IS than in both BAL fractions, including ENA-78, IL-1beta, I-TAC and TRAIL. IL-10 and IFN-gamma were present in IS samples but largely undetectable in BAL. At the cellular level, T-cell frequency was lower in IS than in BAL. Monocytes / macrophages were dominant in IS and BAL with similar frequencies but differing expression of CD16 (lower in IS), CD115 and surface-associated NE (higher in IS). Meanwhile, soluble NE had lower activity in IS than in BAL. Neutrophil frequency and phenotype did not differ between IS and BAL. Importantly however, neutrophil frequency in IS correlated measures of lung damage by chest CT. Conclusions: IS collected from young children with CF yields molecular and cellular biomarkers of early airway inflammation and structural lung damage.
DOI: 10.17632/wsrjd8m2h6.1
title: Data for "The h-index is no longer an effective correlate of scientific reputation"

description: The impact of individual scientists is commonly quantified using citation-based measures. The most common such measure is the h-index. A scientist's h-index affects hiring, promotion, and funding decisions, and thus shapes the progress of science. Here we report a large-scale study of scientometric measures, analyzing millions of articles and hundreds of millions of citations across four scientific fields and two data platforms. We find that the correlation of the h-index with awards that indicate recognition by the scientific community has substantially declined. These trends are associated with changing authorship patterns. We show that these declines can be mitigated by fractional allocation of citations among authors, which has been discussed in the literature but not implemented at scale. We find that a fractional analogue of the h-index outperforms other measures as a correlate and predictor of scientific awards. Our results suggest that the use of the h-index in ranking scientists should be reconsidered, and that fractional allocation measures such as h-frac provide more robust alternatives.
DOI: 10.17632/jkv4sg69xr.1
title: Peer assessment

description: Dataset for manuscript "Students’ experience of making and receiving peer assessment: The effect of self-assessed knowledge and trust"
DOI: 10.25646/8654
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4955808
title: Data base from Efficacy of Sphincter Control Training and medical device in the treatment of premature ejaculation: A multicenter randomized controlled clinical trial.

description: <strong>Data base from </strong>Efficacy of Sphincter Control Training and medical device in the treatment of premature ejaculation: A multicenter randomized controlled clinical trial. <strong>Fold Increase in IELT</strong>. As the main measure, the FI in the IELT was used, which was calculated using the geometric mean (GM)* of the posttreatment IELT (period B), calculated with the recorded times of the last two weeks of treatment, divided by the geometric mean of the IELT at the beginning of the treatment that served as the baseline (period A), calculated with the times of the two weeks of records prior to the random assignment to each group, FI = (GM of 8S)/(GM of prtr) (14). Geometric mean was calculated using mean of natural logarithm with each of the IELT calculated by the subject in each phase. The geometric mean uses its transform for its interpretation once expressed in seconds. <strong>PEDT</strong>. For the diagnosis and as a secondary measure, is a tool originally validated in the Spanish-speaking population, among other. The PEDT was used, consisting of five items that evaluate difficulty delaying ejaculation, ejaculation before the patient desires, ejaculation with little stimulation, frustration related to premature ejaculation and opinion of the partner on ejaculation. The test-retest reliability is .82, and all items discriminate in a statistically significant way between patients with PE and without PE, with a cut-off score for this diagnosis (13)
DOI: 10.5281/zenodo.4955807
title: Data base from Efficacy of Sphincter Control Training and medical device in the treatment of premature ejaculation: A multicenter randomized controlled clinical trial.

description: <strong>Data base from </strong>Efficacy of Sphincter Control Training and medical device in the treatment of premature ejaculation: A multicenter randomized controlled clinical trial. <strong>Fold Increase in IELT</strong>. As the main measure, the FI in the IELT was used, which was calculated using the geometric mean (GM)* of the posttreatment IELT (period B), calculated with the recorded times of the last two weeks of treatment, divided by the geometric mean of the IELT at the beginning of the treatment that served as the baseline (period A), calculated with the times of the two weeks of records prior to the random assignment to each group, FI = (GM of 8S)/(GM of prtr) (14). Geometric mean was calculated using mean of natural logarithm with each of the IELT calculated by the subject in each phase. The geometric mean uses its transform for its interpretation once expressed in seconds. <strong>PEDT</strong>. For the diagnosis and as a secondary measure, is a tool originally validated in the Spanish-speaking population, among other. The PEDT was used, consisting of five items that evaluate difficulty delaying ejaculation, ejaculation before the patient desires, ejaculation with little stimulation, frustration related to premature ejaculation and opinion of the partner on ejaculation. The test-retest reliability is .82, and all items discriminate in a statistically significant way between patients with PE and without PE, with a cut-off score for this diagnosis (13)
DOI: 10.5281/zenodo.4955756
title: BrCris_Model_Example

description: Conjunto de arquivos exemplificado o Modelo de Dados do BrCris.
DOI: 10.5281/zenodo.4955755
title: BrCris_Model_Example

description: Conjunto de arquivos exemplificado o Modelo de Dados do BrCris.
DOI: 10.5281/zenodo.4557021
title: Artifacts of the ESEC/FSE 2021 Submisssion Cognac

description: This repository contains the artifacts of <em><strong>Cognac</strong></em>, a paper under review by ESEC/FSE 2021. <strong>Datasets</strong>: All datasets used in our study are open-sourced. We provide the links to each of them below. Empirical dataset (here) MNR task datasets: <em>Java-small</em>, <em>Java-med</em>, <em>Java-large</em> (here) MNR task dataset: <em>MNire's</em> (here) MCC task dataset (here) To extract this dataset, we excuted the code from Liu et al. on a high-performance server for an extremely long tome. To facilitate future researches, we release our parsed data in <em>RenamedMethods.zip</em>. <strong>Source code</strong>: We release two source files in this repository. <em>dataextractor.py:</em> This is a project-level call graph builder implemented in Python language. One can use it to analyze the call relations within specific projects. Furthermore, one can also use it to extract the input of <em>Cognac</em>, which is a sequence of tokens extracted from totally six sources as we have introduced in the paper. <em>model.py:</em> This is the pointer-generator model of <em>Cognac </em>which is implemented in Pytorch. We will build a homepage for <em>Cognac </em>on Github and release the whole project upon acceptance.
DOI: 10.5281/zenodo.4557020
title: Artifacts of the ESEC/FSE 2021 Submisssion Cognac

description: This repository contains the artifacts of <em><strong>Cognac</strong></em>, a paper under review by ESEC/FSE 2021. <strong>Datasets</strong>: All datasets used in our study are open-sourced. We provide the links to each of them below. Empirical dataset (here) MNR task datasets: <em>Java-small</em>, <em>Java-med</em>, <em>Java-large</em> (here) MNR task dataset: <em>MNire's</em> (here) MCC task dataset (here) To extract this dataset, we excuted the code from Liu et al. on a high-performance server for an extremely long tome. To facilitate future researches, we release our parsed data in <em>RenamedMethods.zip</em>. <strong>Source code</strong>: We release two source files in this repository. <em>dataextractor.py:</em> This is a project-level call graph builder implemented in Python language. One can use it to analyze the call relations within specific projects. Furthermore, one can also use it to extract the input of <em>Cognac</em>, which is a sequence of tokens extracted from totally six sources as we have introduced in the paper. <em>model.py:</em> This is the pointer-generator model of <em>Cognac </em>which is implemented in Pytorch. We will build a homepage for <em>Cognac </em>on Github and release the whole project upon acceptance.
DOI: 10.48370/ofd/xkivc9/fxhkd7
title: FMW_Daedalea_quercina_L_Pers_F_1122_1.JPG

description: Eksykat_makrofotografia
DOI: 10.48370/ofd/xkivc9/3p1u9o
title: FMW_Daedalea_quercina_L_Pers_F_1122_2.JPG

description: Eksykat_makrofotografia
DOI: 10.48370/ofd/xkivc9/jbq2u5
title: FMW_Daedalea_quercina_L_Pers_F_1122_3.JPG

description: Eksykat_makrofotografia
DOI: 10.48370/ofd/xkivc9/9rjsta
title: M-1122.jpg

description: :unav
DOI: 10.48370/ofd/xkivc9/a3drrf
title: 1122.S3Dm

description: :unav
DOI: 10.48370/ofd/xkivc9
title: Gmatwek dębowy (Daedalea quercina (L.) Pers.), 1122

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.4955945
title: Research questions identified by Florida Mosquito Control Districts

description: Research questions identified by Florida Mosquito Control Districts that will improve their control efforts in 2020.
DOI: 10.5281/zenodo.4955944
title: Research questions identified by Florida Mosquito Control Districts

description: Research questions identified by Florida Mosquito Control Districts that will improve their control efforts in 2020.