cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2upq3m
title: Occurrence Download

description: A dataset containing 12926 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Datos observacionales sobre biodiversidad Ministerio del Medio Ambiente 2015"
 ]
}

 The dataset includes 12926 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019489-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nffvzs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontarrhena metajnae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019491-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48324/dandi.001534/0.250715.2016
title: 20250707_Patchseq_BICAN_R01_Neuromodulation_mouse

description: BICAN R01 Neuromodulation mouse upload (Q3 2025)
DOI: 10.5281/zenodo.15926745
title: Precomputed PharmGScore Variant Deleteriousness Scores for Pharmacogenomic Analysis

description: # README: PharmGScore Dataset

**Title**: Precomputed PharmGScore Variant Deleteriousness Scores for Pharmacogenomic Analysis  **Associated Manuscript**:  "Computational variant predictors for pharmacogenomics: from evaluation of single alleles to assessment of adverse drug reactions to antidepressants"_  

---

## Description

This dataset provides **precomputed PharmGScore values** for all possible single-nucleotide variants (SNVs) located in human protein-coding exons ±60 base pairs, across selected pharmacogenes. PharmGScore is a pharmacogenomics-specific variant scoring metric developed by aggregating multiple general-purpose predictors, designed to capture the potential functional impact of both known and novel variants in pharmacogenes.

These scores can be used to evaluate variant deleteriousness in sequencing studies (e.g., WES) and are intended as a scalable alternative or complement to star allele classification in pharmacogenomics.

---

## PharmGScore Calculation Summary

PharmGScore is an **ensemble score** derived from the following tools:- CADD- FATHMM-XF- MutationAssessor- PROVEAN
DOI: 10.5281/zenodo.15926746
title: Precomputed PharmGScore Variant Deleteriousness Scores for Pharmacogenomic Analysis

description: # README: PharmGScore Dataset

**Title**: Precomputed PharmGScore Variant Deleteriousness Scores for Pharmacogenomic Analysis  **Associated Manuscript**:  "Computational variant predictors for pharmacogenomics: from evaluation of single alleles to assessment of adverse drug reactions to antidepressants"_  

---

## Description

This dataset provides **precomputed PharmGScore values** for all possible single-nucleotide variants (SNVs) located in human protein-coding exons ±60 base pairs, across selected pharmacogenes. PharmGScore is a pharmacogenomics-specific variant scoring metric developed by aggregating multiple general-purpose predictors, designed to capture the potential functional impact of both known and novel variants in pharmacogenes.

These scores can be used to evaluate variant deleteriousness in sequencing studies (e.g., WES) and are intended as a scalable alternative or complement to star allele classification in pharmacogenomics.

---

## PharmGScore Calculation Summary

PharmGScore is an **ensemble score** derived from the following tools:- CADD- FATHMM-XF- MutationAssessor- PROVEAN
DOI: 10.5281/zenodo.15918158
title: GC×GC-TOF-MS VOCs Dataset from Streptomyces sp. MM122 and Amycolatopsis sp. MMun171

description: This dataset contains GC×GC-TOF-MS data (in .cdf format) of volatile organic compounds (VOCs) emitted by Streptomyces sp. MM122 and Amycolatopsis sp. MMun171, the two different strains were cultivated in two different media : MHB and ISP2.  Each strain–medium combination includes two biological replicates and three technical replicates per biological replicate.  In addition to the experimental samples, pooled quality control (QC) samples were also included in the dataset. These QC samples were prepared by combining aliquots from all experimental samples and were analyzed periodically throughout the run to monitor instrument performance

An accompanying Excel file provides a detailed inventory of all .cdf files, including injection dates and sample descriptions.
DOI: 10.5281/zenodo.15918157
title: GC×GC-TOF-MS VOCs Dataset from Streptomyces sp. MM122 and Amycolatopsis sp. MMun171

description: This dataset contains GC×GC-TOF-MS data (in .cdf format) of volatile organic compounds (VOCs) emitted by Streptomyces sp. MM122 and Amycolatopsis sp. MMun171, the two different strains were cultivated in two different media : MHB and ISP2.  Each strain–medium combination includes two biological replicates and three technical replicates per biological replicate.  In addition to the experimental samples, pooled quality control (QC) samples were also included in the dataset. These QC samples were prepared by combining aliquots from all experimental samples and were analyzed periodically throughout the run to monitor instrument performance

An accompanying Excel file provides a detailed inventory of all .cdf files, including injection dates and sample descriptions.
DOI: 10.15468/dl.eg5wws
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nemacheilus triangularis"
 ]
}

 The dataset includes 64 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019493-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thephe
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019494-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf4sae
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019495-250711103210423/datasets/export for details.
DOI: 10.7910/dvn/atcoi7
title: Replication Data for: Automation and Polarization

description: This is the replication package for "Automation and Polarization," accepted in 2025 by the Journal of Political Economy.
DOI: 10.15468/dl.4a4wjm
title: Occurrence Download

description: A dataset containing 2923 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum linifolium"
 ]
}

 The dataset includes 2923 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019497-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssq5fd
title: Occurrence Download

description: A dataset containing 1432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Diachlorus ferrugatus"
 ]
}

 The dataset includes 1432 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019496-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snu8ru
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba hemsleyana"
 ]
}

 The dataset includes 25 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019500-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4aau2h
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metynnis luna"
 ]
}

 The dataset includes 323 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019501-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pp6az
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matthiola shiraziana"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019502-250711103210423/datasets/export for details.
DOI: 10.15468/dl.ceunm4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Eritrea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019504-250711103210423/datasets/export for details.
DOI: 10.15468/dl.6u562t
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 104 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019505-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj57jf
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizopetalon arcuatum"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019506-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5x8xt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADM0605"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019507-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/jf80-c671
title: Liberia Compact - Roads: Final Analysis Report
DOI: 10.15468/dl.u2pjks
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperis odorata"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019508-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arsh63
title: Occurrence Download

description: A dataset containing 1262760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falona castagnei, Falona echinata, Phalona castagnei, Phalona echinata, Dactylis, Amaxitis, Dactilis, Dacttylis, Dactylus, Trachypoa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1262760 records from 3902 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019419-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq7m29
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scaphopoda)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((150 60,180 60,180 90,150 90,150 60))"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012939-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hh2fd6
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scaphopoda)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((30 30,60 30,60 60,30 60,30 30))"
 ]
}

 The dataset includes 300 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012938-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15619438
title: 2007 - London - RAW - Grimmond Urban Micromet Group

description: King's College London/University of Reading Grimmond Urban Micromet Group  

Year: 2007

City: London

Data Levels: raw

Sites:
DOI: 10.5281/zenodo.15619439
title: 2007 - London - RAW - Grimmond Urban Micromet Group

description: King's College London/University of Reading Grimmond Urban Micromet Group  

Year: 2007

City: London

Data Levels: raw

Sites:
DOI: 10.5281/zenodo.16630268
title: Effects of legume and non-legume winter cover crops on summer crops under organic management from 2015 to 2023

description: This database originates from field trials conducted between 2013 and 2023 by CREABIO at the La Hourre experimental site (southwestern France), and was compiled by ITAB. The objective of these trials was to investigate the impact of introducing cover crops during the intercrop period on the performance of the subsequent summer crop (soybean- Glycine max and linseed - Linum usitatissimum). The cover crops were sown in September and terminated by mowing in March of the following year, prior to the establishment of the summer crop.Each treatment corresponded to a specific combination of two cover crop species—legume or non-legume—sown at varying densities. A total of 21 treatments were implemented, involving 12 cover crop species, including faba bean (Vicia faba), Vicia benghalensis, Vicia sativa, oat (Avena strigosa), buckwheat (Fagopyrum esculentum), barley (Hordeum vulgare), clover (Trifolium spp.), Setaria italica, Sinapis alba, lentil (Lens culinaris), phacelia (Phacelia tanacetifolia), and sorghum (Sorghum bicolor). All treatments were compared to a control with no cover crop.The trials followed a split-plot design with 3 replicates.

The database includes information on:

-    Field operations: sowing, fertilization, weed control, and harvesting-    Summer crop production performance: yield, protein content, grain nitrogen and phosphorus total content, aboveground residue biomass quantity, nitrogen and phosphorus total content-    Cover crop production performance for each species: aboveground residue biomass quantity, nitrogen and phosphorus total content-    Yield components: plant density (plants/m²), pods density (pods/m²), grain density (grains/m²), and thousand seed weight-    Soil mineral nitrogen content at different horizons at different dates.

In addition, the database includes daily weather data (minimum, maximum, and mean temperature, as well as precipitation) recorded at the on-site weather station during the trial period.

Crop succession:

              Year n               ||               Year n+1

                      <-Cover crops->  <-Summer crop->

This dataset is part of the database compiled as an outcome of Work Area 1 in project OrganicYieldsUP. Variable definitions can be found here:  https://doi.org/10.5281/zenodo.15276082
description: ID abbreviations:CC: cover cropsCC-W: winter cover cropsNO: without cover cropsW-x: treatment numberExample « CC_W-6 » correspond to winter cover crops treatment number 6
description: Publications based on this dataset (Frensh):

Résultats de l’essai test de couverts végétaux en agriculture biologique : –    Campagne 2015–    Campagne 2016–    Campagne 2017–    Campagne 2018–    Campagne 2019–    Campagne 2020–    Campagne 2021–    Campagne 2022–    Campagne 2023
DOI: 10.5281/zenodo.16630269
title: Effects of legume and non-legume winter cover crops on summer crops under organic management from 2015 to 2023

description: This database originates from field trials conducted between 2013 and 2023 by CREABIO at the La Hourre experimental site (southwestern France), and was compiled by ITAB. The objective of these trials was to investigate the impact of introducing cover crops during the intercrop period on the performance of the subsequent summer crop (soybean- Glycine max and linseed - Linum usitatissimum). The cover crops were sown in September and terminated by mowing in March of the following year, prior to the establishment of the summer crop.Each treatment corresponded to a specific combination of two cover crop species—legume or non-legume—sown at varying densities. A total of 21 treatments were implemented, involving 12 cover crop species, including faba bean (Vicia faba), Vicia benghalensis, Vicia sativa, oat (Avena strigosa), buckwheat (Fagopyrum esculentum), barley (Hordeum vulgare), clover (Trifolium spp.), Setaria italica, Sinapis alba, lentil (Lens culinaris), phacelia (Phacelia tanacetifolia), and sorghum (Sorghum bicolor). All treatments were compared to a control with no cover crop.The trials followed a split-plot design with 3 replicates.

The database includes information on:

-    Field operations: sowing, fertilization, weed control, and harvesting-    Summer crop production performance: yield, protein content, grain nitrogen and phosphorus total content, aboveground residue biomass quantity, nitrogen and phosphorus total content-    Cover crop production performance for each species: aboveground residue biomass quantity, nitrogen and phosphorus total content-    Yield components: plant density (plants/m²), pods density (pods/m²), grain density (grains/m²), and thousand seed weight-    Soil mineral nitrogen content at different horizons at different dates.

In addition, the database includes daily weather data (minimum, maximum, and mean temperature, as well as precipitation) recorded at the on-site weather station during the trial period.

Crop succession:

              Year n               ||               Year n+1

                      <-Cover crops->  <-Summer crop->

This dataset is part of the database compiled as an outcome of Work Area 1 in project OrganicYieldsUP. Variable definitions can be found here:  https://doi.org/10.5281/zenodo.15276082
description: ID abbreviations:CC: cover cropsCC-W: winter cover cropsNO: without cover cropsW-x: treatment numberExample « CC_W-6 » correspond to winter cover crops treatment number 6
description: Publications based on this dataset (Frensh):

Résultats de l’essai test de couverts végétaux en agriculture biologique : –    Campagne 2015–    Campagne 2016–    Campagne 2017–    Campagne 2018–    Campagne 2019–    Campagne 2020–    Campagne 2021–    Campagne 2022–    Campagne 2023
DOI: 10.3535/h1t-px9-ewz
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rre-7cy-14d
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0jb-s91-d47
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e15-p23-2a3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v7g-mt2-f3e
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yzx-rp0-yf4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v8h-k5t-n5c
title: Balaenoptera acutorostrata Lacépède, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ght-9wp-yad
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xa2-j71-e69
title: Raja

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/220-y0d-pm7
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rxk-jyl-620
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3fj-pgr-22j
title: Bos taurus primigenius Bojanus, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ge3-bpl-2c8
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.yfskjn
title: Occurrence Download

description: A dataset containing 24736657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sturnus vulgaris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24736657 records from 5892 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018289-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn7kdu
title: Occurrence Download

description: A dataset containing 1784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gentiana macrophylla Pall."
 ]
}

 The dataset includes 1784 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001433-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.