cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4z7gys
title: Occurrence Download

description: A dataset containing 75685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dactylorhiza incarnata (L.) Soó",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 75685 records from 382 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161854-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3tpt9
title: Occurrence Download

description: A dataset containing 9928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calidris alba (Pallas, 1764)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 1999",
 "Year is less than or equal to 2001",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False",
 "DecimalLatitude is greater than or equal to 24.5",
 "DecimalLatitude is less than or equal to 49.5",
 "DecimalLongitude is greater than or equal to -125.0",
 "DecimalLongitude is less than or equal to -66.5"
 ]
}

 The dataset includes 9928 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378692-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbvhnh
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evotella Kurzweil & H.P.Linder"
 ]
}

 The dataset includes 261 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045401-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8390710
title: CESPED-10648_split1

description: CESPED-10647_split1 is part of the Cryo-EM Supervised Pose Estimation Dataset benchmark. The particles*.star file contains the metadata, and the .mrcs.chunk* contains the images. https://arxiv.org/abs/2311.06194
DOI: 10.5281/zenodo.8390711
title: CESPED-10648_split1

description: CESPED-10647_split1 is part of the Cryo-EM Supervised Pose Estimation Dataset benchmark. The particles*.star file contains the metadata, and the .mrcs.chunk* contains the images. https://arxiv.org/abs/2311.06194
DOI: 10.15468/dl.gtq46y
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Maquira coriacea (H.Karst.) C.C.Berg"
 ]
}

 The dataset includes 51 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378699-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4yjee
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya confusa Rolfe"
 ]
}

 The dataset includes 42 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092744-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54027
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.18739/a2833n091
title: Woody debris and snag carbon pools across a post-fire tree density gradient in far northeastern Siberia, 2010 - 2017

description: Fire severity is increasing in larch forests of the Siberian Arctic as climate warms, and initial fire impacts on tree demographic processes could be an especially important determinant of long-term forest structure and carbon (C) dynamics. We hypothesized that changes in post-fire larch recruitment impact C accumulation through tree density impacts on understory microclimate and permafrost thaw. We tested these hypotheses by quantifying C pools across a Cajander larch (Larix cajanderi Mayr.) tree density gradient within a fire perimeter near Cherskiy, Russia that burned in ~1940. Across the density gradient, from 2010 - 2017 we inventoried larch trees and harvested ground-layer vegetation to estimate above ground contribution to C pools. We also quantified snag and woody debris C pools and sampled below ground C pools (soil, fine roots, and coarse roots) in the organic + upper mineral soils. Our findings should highlight the potential for a climate-driven increase in fire severity to alter tree recruitment, successional dynamics, and C cycling in Siberian larch forests.
DOI: 10.15468/dl.tbdcy9
title: Occurrence Download

description: A dataset containing 3334 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxalis latifolia Kunth"
 ]
}

 The dataset includes 3334 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009959-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7m2py
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nycticeius cubanus (Gundlach, 1861)"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0352507-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w538uz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asteroma inconspicuum (Cavara) B.Sutton",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101089-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3exmd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Renanthera hennisiana Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101087-230530130749713/datasets/export for details.
DOI: 10.15468/dl.dcq1wv
title: Occurrence Download

description: A dataset containing 1307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ephestia kuehniella Zeller, 1879",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1307 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011388-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11002775
title: Walking behavior of flies (Drosophila melanogaster)
title: Dataset accompanying the study "Modeling conditional distributions of neural and behavioral data with masked variational autoencoders"

description: Dataset description

The dataset consists of walking behaviors of flies, Drosophila melanogaster, that were placed in an acrylic arena that constrained them to move in a 2D plane. The flies were part of a genetic screen (not wild-type) but were examined during behavior capture and were morphologically and behaviorally indistinguishable from wild-type flies.

We placed three female flies in one arena simultaneously and filmed them from below for 3 seconds (frame rate 80Hz). This was repeated several times for different sets of flies. To extract each fly from the video separately, we tracked the centroid of each fly using Tracktor (Sridhar et al. 2019), cropped out the flies in each frame, and aligned them to point in the same direction. We then tracked 32 body parts (four joints per leg, as well as head features, thorax, abdomen, and wings), each with x- and y-directions using DeepLabCut (Mathis et al. 2018). This resulted in time series with 64 feature dimensions. We then smoothed the extracted time series using a Savitzky-Golay-Filter (Savitzky and Golay, 1964).

Dataset dimensions








number of sequences
28059


sequence length
234


keypoints (2 per keypoint)
64




 



frame rate: 80 Hz 

Loading the data in Python

 

import h5py

with h5py.File('Fly_DLC_behavior_tracking.h5', 'r') as f:
    data = f['data'][:]
DOI: 10.5281/zenodo.11002776
title: Walking behavior of flies (Drosophila melanogaster)
title: Dataset accompanying the study "Modeling conditional distributions of neural and behavioral data with masked variational autoencoders"

description: Dataset description

The dataset consists of walking behaviors of flies, Drosophila melanogaster, that were placed in an acrylic arena that constrained them to move in a 2D plane. The flies were part of a genetic screen (not wild-type) but were examined during behavior capture and were morphologically and behaviorally indistinguishable from wild-type flies.

We placed three female flies in one arena simultaneously and filmed them from below for 3 seconds (frame rate 80Hz). This was repeated several times for different sets of flies. To extract each fly from the video separately, we tracked the centroid of each fly using Tracktor (Sridhar et al. 2019), cropped out the flies in each frame, and aligned them to point in the same direction. We then tracked 32 body parts (four joints per leg, as well as head features, thorax, abdomen, and wings), each with x- and y-directions using DeepLabCut (Mathis et al. 2018). This resulted in time series with 64 feature dimensions. We then smoothed the extracted time series using a Savitzky-Golay-Filter (Savitzky and Golay, 1964).

Dataset dimensions








number of sequences
28059


sequence length
234


keypoints (2 per keypoint)
64




 



frame rate: 80 Hz 

Loading the data in Python

 

import h5py

with h5py.File('Fly_DLC_behavior_tracking.h5', 'r') as f:
    data = f['data'][:]
DOI: 10.15468/dl.4nk3vu
title: Occurrence Download

description: A dataset containing 9384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crupina vulgaris (Pers.) Cass., Crustulina guttata (Wider, 1834))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 9384 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0358516-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54021
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.4kus9s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON Z ((-114.8998 35.39983 928.3167, -114.8992 35.39979 928.8764, -114.8992 35.40035 929.6347, -114.9004 35.40036 928.9726, -114.8998 35.39983 928.3167))",
 "TaxonKey is one of (Aves)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378700-210914110416597/datasets/export for details.
DOI: 10.15468/dl.k2ccdp
title: Occurrence Download

description: A dataset containing 5569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is Guinea-Bissau",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 5569 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010751-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp8a3v
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya cooperi Summerh."
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092745-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru834r
title: Occurrence Download

description: A dataset containing 78687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aristolochia L."
 ]
}

 The dataset includes 78687 records from 857 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378713-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8387466
title: CESPED-10648_split0

description: CESPED-10647_split0 is part of the Cryo-EM Supervised Pose Estimation Dataset benchmark. The particles*.star file contains the metadata, and the .mrcs.chunk* contains the images. https://arxiv.org/abs/2311.06194
DOI: 10.5281/zenodo.8387467
title: CESPED-10648_split0

description: CESPED-10647_split0 is part of the Cryo-EM Supervised Pose Estimation Dataset benchmark. The particles*.star file contains the metadata, and the .mrcs.chunk* contains the images. https://arxiv.org/abs/2311.06194
DOI: 10.15468/dl.zymmfo
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrena micheneriana LaBerge, 1978"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001744-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ez9hxm
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asteridiella pitya (Sacc. ex F.Stevens) Hansf.",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101084-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej5t74
title: Occurrence Download

description: A dataset containing 3313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciurus deppei Peters, 1863"
 ]
}

 The dataset includes 3313 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0352716-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54035
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.egpmcz
title: Occurrence Download

description: A dataset containing 987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Ursus arctos Linnaeus, 1758"
 ]
}

 The dataset includes 987 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011389-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdp24t
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya brugeana Geerinck"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092723-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc758f
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus morio (Swederus, 1787)"
 ]
}

 The dataset includes 206 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205014-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwq253
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trinomys iheringi (Thomas, 1911)"
 ]
}

 The dataset includes 209 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0352726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwdpy4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphenomorphus celebense (Müeller, 1894)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011389-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v27rts
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piriqueta suborbicularis (A.St.-Hil. & Naudin) Arbo"
 ]
}

 The dataset includes 237 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081176-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzocfc
title: Occurrence Download

description: A dataset containing 14846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphalidae",
 "Country is Colombia"
 ]
}

 The dataset includes 14846 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012844-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhfwug
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceuthostoma terminale L.A.S.Johnson"
 ]
}

 The dataset includes 25 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091121-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.blnap5
title: Occurrence Download

description: A dataset containing 1227 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus varius (Lichtenstein & Martens, 1856)"
 ]
}

 The dataset includes 1227 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012844-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-03.1958716/2364230
title: Data for EMSL Project 49229 from March 2020
DOI: 10.15468/dl.4qxh9e
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anilios pinguis (Waite, 1897)"
 ]
}

 The dataset includes 74 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091130-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h99bb9
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha papillosa Rose"
 ]
}

 The dataset includes 142 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008608-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdtdpu
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chadsia grevei Drake"
 ]
}

 The dataset includes 594 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091143-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zijx9q
title: Occurrence Download

description: A dataset containing 72391 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine and Coastal Management - Linefish Dataset (First Semester of 1997) (AfrOBIS)"
 ]
}

 The dataset includes 72391 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012845-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-03.1958673/2364231
title: Data for EMSL Project 49229 from March 2020