cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25639029.v2
title: Degradation determinants are abundant in human noncanonical proteins and minor annotated isoforms

description: The comprehensive characterization of human proteins, a key objective in contemporary biology, has been revolutionized by the identification of thousands of potential novel proteins through ribosome profiling and proteomics. Determining the physiological activity of these noncanonical proteins has proven difficult, because they are encoded by different types of coding regions and tend to share no sequence similarity with canonical polypeptides. Evidence from immunopeptidomic assays combined with a better understanding of the quality control of protein synthesis suggest that many noncanonical proteins may possess low stability in the cellular environment. Here, we tested this hypothesis by analyzing the frequency of multiple sequence features eliciting either proteasomal degradation or autophagy across 91,003 canonical (annotated) protein isoforms and 11,499 noncanonical proteins. Overall, noncanonical proteins were enriched for degradation-related features compared to all canonical proteins. Notably, degradation determinants were also enriched in canonical protein isoforms starting with a non-methionine amino acid. Analyses of original and shuffled sequences showed evidence of selective pressure either against or towards the accumulation of specific degradation signatures only in major isoforms of canonical proteins. However, stability was significantly higher in noncanonical proteins with evidence of phenotypic effects upon knock-out in cell lines. Notably, we found that the C-terminal tail hydrophobicity represents a reliable proxy for degradation propensity with potential applications in identifying functional noncanonical proteins. These findings underscore the critical role of degradation processes in regulating the half-life of noncanonical proteins and demonstrate the power of degradation-associated signatures in discriminating noncanonical genes likely to encode biologically functional molecules.
DOI: 10.6084/m9.figshare.25639029.v1
title: Degradation determinants are abundant in human noncanonical proteins and minor annotated isoforms

description: The comprehensive characterization of human proteins, a key objective in contemporary biology, has been revolutionized by the identification of thousands of potential novel proteins through ribosome profiling and proteomics. Determining the physiological activity of these noncanonical proteins has proven difficult, because they are encoded by different types of coding regions and tend to share no sequence similarity with canonical polypeptides. Evidence from immunopeptidomic assays combined with a better understanding of the quality control of protein synthesis suggest that many noncanonical proteins may possess low stability in the cellular environment. Here, we tested this hypothesis by analyzing the frequency of multiple sequence features eliciting either proteasomal degradation or autophagy across 91,003 canonical (annotated) protein isoforms and 11,499 noncanonical proteins. Overall, noncanonical proteins were enriched for degradation-related features compared to all canonical proteins. Notably, degradation determinants were also enriched in canonical protein isoforms starting with a non-methionine amino acid. Analyses of original and shuffled sequences showed evidence of selective pressure either against or towards the accumulation of specific degradation signatures only in major isoforms of canonical proteins. However, stability was significantly higher in noncanonical proteins with evidence of phenotypic effects upon knock-out in cell lines. Notably, we found that the C-terminal tail hydrophobicity represents a reliable proxy for degradation propensity with potential applications in identifying functional noncanonical proteins. These findings underscore the critical role of degradation processes in regulating the half-life of noncanonical proteins and demonstrate the power of degradation-associated signatures in discriminating noncanonical genes likely to encode biologically functional molecules.
DOI: 10.15468/dl.eb5dvj
title: Occurrence Download

description: A dataset containing 1296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.38692793264421",
 "DecimalLongitude is less than 7.38998748582861",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1296 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000861-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a86wc
title: Occurrence Download

description: A dataset containing 691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "GadmGid is one of (IRN.11_1, IRN.11.2_1, IRN.11.14_1, IRN.3_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoenicopterus roseus"
 ]
}

 The dataset includes 691 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000862-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usmz3f
title: Occurrence Download

description: A dataset containing 16500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Living Specimen, Machine Observation)",
 "Issue is Continent derived from coordinates",
 "TaxonKey is Glyphotaelius pellucidus"
 ]
}

 The dataset includes 16500 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000860-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvqsye
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Croatia",
 "OccurrenceStatus is Present",
 "TaxonKey is Clamator glandarius"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000864-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e130341v3-191688
title: Data and Code for: Intergenerational Economic Mobility and the Racial Wealth Gap

description: A growing body of research documents the importance of wealth and the racial wealth gap in perpetuating inequality across generations. We add to this literature by examining the impact of wealth on child income. Our two stage least squares regressions reveal that grandparental and parental wealth have an important effect on the younger generation’s stock (first stage results), which in turn affects the younger generation’s household income (second stage results). We further explore the relationship between income and wealth by decomposing the child’s income by race. We find that the intergroup disparity in income is mainly attributable to differences in family background. These findings indicate that wealth is an important source of income inequality.<br>
DOI: 10.15468/dl.5gzre9
title: Occurrence Download

description: A dataset containing 3008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis acetosella",
 "Country is Denmark",
 "Year is greater than or equal to 2020"
 ]
}

 The dataset includes 3008 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000866-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afgtxg
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthopterum coeganum"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000865-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2ve27
title: Occurrence Download

description: A dataset containing 1412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.38998748582861",
 "DecimalLongitude is less than 7.393047039013",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1412 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000867-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fk94zw
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.22158 4.21711,-73.89976 4.21711,-73.90472 4.91993,-74.22158 4.8231,-74.22158 4.21711))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus hortulanus"
 ]
}

 The dataset includes 249 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000868-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e170941v2-191689
title: Wealth of two nations: The U.S. racial wealth gap, 1860-2020

description: PSID data extract for computing per capita white-to-Black wealth gaps and active saving rates of Black and white Americans during 1984-2019.
DOI: 10.5519/qd.urkmntlo
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (215 records)
DOI: 10.15468/dl.3rzthp
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.36086 36.32018,-72.79334 36.32018,-72.54854 40.97111,-82.09521 41.46069,-81.36086 36.32018))",
 "TaxonKey is Ageratina altissima altissima"
 ]
}

 The dataset includes 47 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000869-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110814133
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110813765
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814085
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814050
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814120
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.5281/zenodo.17542294
title: GeoLocator Data Package: Siberian Rubythroat from China

description: Project description





Year: 2020 - 2024

Location: Datong, Qinghai, China

Deployment: 31 PinPoint-10 GPS + 13 light-level geolocator (2020); 20 CAnMove logger (2021); 12 PinPoint-10 GPS (2022); 9 MigrateTech multi-sensor logger (2023)

Main collaborating parties: CAnMove lab, Lund University (logger supplier); Zoology Institute of China, Chinese Academy of Science, China (fieldwork arrangements); Swiss Ornithology Institute (data analysis); University of Groningen (PhD basis)

Other tracked sympatric species: Yellow-streaked Warbler (Phylloscopus armandii), Siberian Stonechat (Saxicola maurus przewalskii), Black-faced Bunting (Emberiza spodocephala)


How to use

Datapackage:



Zhao T, Heim W, Lei F, Song G, Helm B, Nussbaumer R (2025). “GeoLocator Data Package: Siberian Rubythroat from China.” https://doi.org/10.5281/zenodo.17542294


Associated publication:



Zhao, T., Heim, W., Nussbaumer, R. et al. Seasonal migration patterns of Siberian Rubythroat (Calliope calliope) facing the Qinghai–Tibet Plateau. Mov Ecol 12, 54 (2024). https://doi.org/10.1186/s40462-024-00495-5


Data





Temporal: "2021-08-15" to "2022-06-05"

Taxonomic: "Calliope calliope"

Number of tags: 6

Sensors: light (only a few days), pressure and activity.
DOI: 10.5281/zenodo.17542295
title: GeoLocator Data Package: Siberian Rubythroat from China

description: Project description





Year: 2020 - 2024

Location: Datong, Qinghai, China

Deployment: 31 PinPoint-10 GPS + 13 light-level geolocator (2020); 20 CAnMove logger (2021); 12 PinPoint-10 GPS (2022); 9 MigrateTech multi-sensor logger (2023)

Main collaborating parties: CAnMove lab, Lund University (logger supplier); Zoology Institute of China, Chinese Academy of Science, China (fieldwork arrangements); Swiss Ornithology Institute (data analysis); University of Groningen (PhD basis)

Other tracked sympatric species: Yellow-streaked Warbler (Phylloscopus armandii), Siberian Stonechat (Saxicola maurus przewalskii), Black-faced Bunting (Emberiza spodocephala)


How to use

Datapackage:



Zhao T, Heim W, Lei F, Song G, Helm B, Nussbaumer R (2025). “GeoLocator Data Package: Siberian Rubythroat from China.” https://doi.org/10.5281/zenodo.17542294


Associated publication:



Zhao, T., Heim, W., Nussbaumer, R. et al. Seasonal migration patterns of Siberian Rubythroat (Calliope calliope) facing the Qinghai–Tibet Plateau. Mov Ecol 12, 54 (2024). https://doi.org/10.1186/s40462-024-00495-5


Data





Temporal: "2021-08-15" to "2022-06-05"

Taxonomic: "Calliope calliope"

Number of tags: 6

Sensors: light (only a few days), pressure and activity.
DOI: 10.25549/inscriptifact-ouc110814043
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110812551
title: Attic Black-Figure Sherd with Three Standing Figures and a Warrior, BMC P.978

description: [Text or Publication Number Note:] BMC P.978 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay, Black-Figure Sherd ❧ [Physical Object Note:] 5 1/2 x 4 5/16 x 5/32 in. (14 x 11 x 0.4 cm)
DOI: 10.25549/inscriptifact-ouc110812524
title: Attic Black-Figure Sherd with Three Standing Figures and a Warrior, BMC P.978

description: [Text or Publication Number Note:] BMC P.978 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay, Black-Figure Sherd ❧ [Physical Object Note:] 5 1/2 x 4 5/16 x 5/32 in. (14 x 11 x 0.4 cm)
DOI: 10.15468/dl.6ffvmv
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China)",
 "TaxonKey is Rhododendron breviperulatum Hayata"
 ]
}

 The dataset includes 327 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012716-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cfnmx
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron clementinae Forrest"
 ]
}

 The dataset includes 182 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012717-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7drde
title: Occurrence Download

description: A dataset containing 3169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pachypodium Lindl."
 ]
}

 The dataset includes 3169 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009010-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ykeuc
title: Passed Acts; St. 1839, c.4, SC1/series 229, Petition of Noah C. Cannon

description: &lt;p&gt;Petition subject: Incorporation &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:10520832"&gt;http://nrs.harvard.edu/urn-3:FHCL:10520832&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Boston &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Stephen Fairbanks, Suffolk; committee on parishes &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Noah C. Cannon&lt;/li&gt;&lt;li&gt;Henry Carroll&lt;/li&gt;&lt;li&gt;Daniel Laing&lt;/li&gt;&lt;li&gt;Charles H. Roberts&lt;/li&gt;&lt;li&gt;John Marshall&lt;/li&gt;&lt;li&gt;John Robins&lt;/li&gt;&lt;li&gt;George Turner&lt;/li&gt;&lt;li&gt;Peter Gambriel&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1839-01-10,1839-01-11 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on January 10, 1839 and referred to the committee on parishes and received in the Senate on January 11, 1839 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 9 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, received, concurred &lt;/p&gt; &lt;p&gt;Males of color signatures: 9 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: persons of color, [males of color], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: First African Methodist Episcopal and Bethel Church in Boston, religious &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: St. 1839, c.4, passed January 28, 1839 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/auhglp
title: Replication Data for: Understanding intersectionality between determinants associated with maternal health care utilization in Uttar Pradesh, India

description: This is the dataset for the paper "Understanding intersectionality between determinants associated with maternal health care utilization in Uttar Pradesh, India". The paper identifies intersections that relate to health care utilization being reduced or heightened. Understanding of such interactions between determinants can help in maximizing the efficiency of programs that increase health care utilization by more precisely targeting those groups in greatest need.
DOI: 10.5281/zenodo.15574080
title: Labeled Infrasound Dataset and Trained Models for CEEIN

description: Supplementry files for automatic Signal Discrimination Using Machine Learning on the Data from the Central and Eastern European Infrasound Network in Journal of Geophysical Research: Athmospheres.