cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3822298
title: All-atom 500-nano seconds Molecular Dynamics Simulations of SARS-CoV-2 Spike Receptor-binding Domain bound with ACE2

description: Data includes all of the trajectories (1000) of classical all-atom molecular dynamics (MD) simulations of of SARS-CoV2 Spike Protein/ACE2 complex (PDB ID: 6M0J). In order to decrease the size of the file only protein rajectories were provided. Simulation has been performed with Desmond. Protein was placed in the cubic boxes with explicit TIP3P water models that have 10.0 Å thickness from surfaces of protein. The system is neutralized by adding counter ions, and salt solution of 0.15M NaCl was also used to adjust the concentration of the systems. The long-range electrostatic interactions were calculated by the particle mesh Ewald method. A cutoff radius of 9.0 Å was used for both van der Waals and Coulombic interactions. The temperature was set as 310K initially, and Nose–Hoover thermostat was used for adjustment. Martyna–Tobias–Klein protocol was employed to control the pressure, which was set at 1.01325 bar. The time-step was assigned as 2.0 fs. The default values were used for minimization and equilibration steps, and finally 500 nano-seconds (ns) production run was performed for the simulation.
description: for more information: durdagilab.com; serdardurdagi@gmail.com
DOI: 10.5281/zenodo.3822490
title: Simulating desorption in vacuum from a porous soil

description: This dataset contains simulated data of desorption events from a Monte Carlo simulation of desorption and diffusion in 3D sphere packings. The packings were produced sampling the grain size distribution from Apollo soil 72141.<br> The gas species in these simulations have microphysical parameters consistent with alkali gases (Na, K).<br> The output may enable better representations of the desorption process in global exosphere models of Mercury and the Moon for these species.<br> Output in CSV format is presented as fraction of desorbed test particles versus time.
description: {"references": ["Sarantos, Tsavachidis (2020). The boundary of alkali surface boundary exospheres of Mercury and the Moon. GRL"]}
DOI: 10.5281/zenodo.3822491
title: Simulating desorption in vacuum from a porous soil

description: This dataset contains simulated data of desorption events from a Monte Carlo simulation of desorption and diffusion in 3D sphere packings. The packings were produced sampling the grain size distribution from Apollo soil 72141.<br> The gas species in these simulations have microphysical parameters consistent with alkali gases (Na, K).<br> The output may enable better representations of the desorption process in global exosphere models of Mercury and the Moon for these species.<br> Output in CSV format is presented as fraction of desorbed test particles versus time.
description: {"references": ["Sarantos, Tsavachidis (2020). The boundary of alkali surface boundary exospheres of Mercury and the Moon. GRL"]}
DOI: 10.5281/zenodo.3821951
title: Dataset de les xarxes socials de les biblioteques de Lleida

description: Dataset de les xarxes socials de les província de Leida. Aquest dataset va ser recollit al febrer de 2020 per presentar el treball de fi de grau de Carina Mirassó. Els camps que conté aquest fitxer són: Comarca Biblioteca Twitter Facebook Instagram YouTube Linkedin Blog TikTok Slideshare Vimeo Web Spotify Pinterest Telegram Recordeu fer la citació corresponent si utilitzeu el dataset
DOI: 10.15468/jw8cz6
title: Systematic revision of the family Pleioplanidae Faubel, 1983 (Polycladida, Acotylea): new genus and combinations

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rodríguez, Jorge, Grande, Cristina, Bulnes, NataliaVeronica, Almon, Bruno, Perez, Jacinto, Noreña, Carolina (2017): Systematic revision of the family Pleioplanidae Faubel, 1983 (Polycladida, Acotylea): new genus and combinations. European Journal of Taxonomy 264: 1-30, DOI: http://dx.doi.org/10.5852/ejt.2017.264
DOI: 10.5285/01f26c07-ea6c-4d89-893e-d86247874e78
title: Ice surface, ice base and lake bed elevation data from seismic data acquired over Subglacial Lake Ellsworth 2007-08

description: Point data measurements of ice surface, ice base and lake bed elevation are given from Subglacial Lake Ellsworth (SLE), West Antarctica. The data were acquired during the austral summer of 2007-2008. Five seismic reflection lines were acquired over SLE, with surface elevation determined by dual frequency GPS. Funding was provided by NERC AFI, award numbers NE/D009200/1, NE/D008638/1 and NE/D008751/1. Logistics support: British Antarctic Survey. Equipment support: NERC Geophysical Equipment Facility (loan numbers 838 and 870).
description: Five seismic reflection profiles were acquired. The seismic source was 450 g explosives at 30 m depth. Shot spacing was 240 m, number of channels was 48 and geophone spacing was 10 m, resulting in single-fold data. Data processing included normal moveout correction, and migration. Ice-water and water-bed interface reflections were picked from stacked seismic sections. Depth conversion used a travel-time correction for the upper snow and firn, and standard ice- and water-column velocities. Full details of data acquisition and processing are given in: Woodward, J., A. M. Smith, N. Ross, M. Thoma, H. F. J. Corr, E. C. King, M. A. King, K. Grosfeld, M. Tranter, M. J. Siegert, 2010. Location for direct access to subglacial Lake Ellsworth: An assessment of geophysical data and modelling. Geophysical Research Letters, doi:10.1029/2010GL042884. Smith, A.M., J. Woodward, N. Ross, M.J. Bentley, D.A. Hodgson, M.J. Siegert, E.C. King, 2018. Evidence for the long-term sedimentary environment in an Antarctic subglacial lake. Earth and Planetary Science Letters, doi:10.1016/j.epsl.2018.10.011.
description: Seismic data were acquired with Geometrics Geode seismographs; data processing and picking were done with Landmark ProMAX.
description: Data quality are good; the ice-water interface can be clearly picked on virtually all traces, the water-bed interface can be picked in most places, except close to the lake shoreline and at a few other locations on each line. Only the results from traces where both reflections can be picked are provided. Nominal point spacing is 5 m, with occasional gaps at the locations where both reflections could not be picked. Absolute errors in ice- and water-column thickness are 10 m and 1.5 m respectively, although relative thicknesses changes (trace-to-trace) are more precise. See publications for full details.
DOI: 10.25345/c5141k
title: MassIVE MSV000085400 - Soluble SORLA enhances neurite outgrowth and regeneration through activation of EGFR and MAPK pathways
title: SORLA is a type I transmembrane component associated with Alzheimers disease (AD) risk. Although SORLA is abundantly expressed in neurons, physiological roles for SORLA remain yet unclear. Here, we show that cultured neurons overexpressing SORLA (SORLA TG) feature enhanced neurite length, and accelerated neurite regeneration with wounding. Enhanced accumulation of a soluble SORLA form (sSORLA) is observed in SORLA TG neurons, where purified sSORLA can sufficiently drive neurite extension and regeneration. Phosphoproteomic analysis indicates enrichment of phosphoproteins related to the EGFR/ERK pathway in SORLA TG hippocampus. We find that sSORLA can co-precipitate with EGFR in vitro, where sSORLA treatment can induce EGFR Y1173 phosphorylation in cultured neurons. sSORLA also triggers Erk activation and downstream c-fos upregulation/nuclear translocation, where pharmacological EGFR or ERK inhibition reversed enhancements in sSORLA-dependent neurite regeneration. Together, these results implicate the EGFR as a sSORLA receptor which activates ERK/c-Fos pathways to enhance neurite extension, outgrowth and regeneration.
DOI: 10.14458/rsu.res.2020.332
title: A morphological study of Korean past tense in translating Chinese
DOI: 10.14458/rsu.res.2020.333
title: How can teachers activate Peer Response? : Practical Report on a University Writing course in Thailand Using Peer Reading
DOI: 10.14458/rsu.res.2020.334
title: State Powers and Trading Patterns: Three Types and Changes of Overseas Trade in Early Modern China
DOI: 10.14458/rsu.res.2020.335
title: The Impacts on The East Asia's International Order of The Evolution of Chinese Land-Sea Concept
DOI: 10.25345/c5h429
title: MassIVE MSV000085404 - GNPS - Metal addition E coli Nissle dataset for workshop 2020
title: Native ESI metal addition E. coli Nissle dataset for use in workshop [doi:10.25345/C5WQ16]
DOI: 10.5281/zenodo.3820786
title: Brazilian missing persons

description: 10.499 registers of Brazilian missing persons collected in 2018.
description: {"references": ["Gomes Jr, J., Ferranti, N., & de Souza, J. F. (2019, May). Semantic Enrichment of Web Data for the Provision of an Unified Data Repository of Brazilian Missing Persons. In Proceedings of the XV Brazilian Symposium on Information Systems (pp. 1-8)."]}
DOI: 10.5281/zenodo.3820787
title: Brazilian missing persons

description: 10.499 registers of Brazilian missing persons collected in 2018.
description: {"references": ["Gomes Jr, J., Ferranti, N., & de Souza, J. F. (2019, May). Semantic Enrichment of Web Data for the Provision of an Unified Data Repository of Brazilian Missing Persons. In Proceedings of the XV Brazilian Symposium on Information Systems (pp. 1-8)."]}
DOI: 10.5281/zenodo.3822546
title: Isoprene in the Southern Ocean and remote sensed variables

description: %%%%%%<br> Variables' names contained in "rodriguezrosetal_2020_isorems_data.csv"<br> %%%%%% "id" = source of the data ("peg" = PEGASO cruise, "ace" = ACE Expedition, "pml" = ANDREXII, "ooki" = Ooki et al. 2015, "hack" = Hackemberg et al. 2017) "solar_time" = solar time estimated with solaR package on R. "month" = month of the year. "iso_pm" = Isoprene concentration (pM) "chla_fluo" = Chlorophyll-a (fluorometric) "chla_matchup" = Chlorophyll-a (MODIS Aqua) "sst_matchup" = Sea Surface Temperature (MODIS Aqua) "zeu_matchup" = Depth of the Euphotic Layer (MODIS Aqua) "poc_matchup" = Particulate Organic Carbon (MODIS Aqua) "pic_matchup" = Particulate Inorganic Carbon (MODIS Aqua) "mld_matchup" = Mixing Layer Depth (Holte et al. 2017) "par_matchup" = PAR radiation (MODIS Aqua) "lat" = Latitude (decimal degrees) "lon" = Longitude (decimal degrees)
DOI: 10.5281/zenodo.3822547
title: Isoprene in the Southern Ocean and remote sensed variables

description: %%%%%%<br> Variables' names contained in "rodriguezrosetal_2020_isorems_data.csv"<br> %%%%%% "id" = source of the data ("peg" = PEGASO cruise, "ace" = ACE Expedition, "pml" = ANDREXII, "ooki" = Ooki et al. 2015, "hack" = Hackemberg et al. 2017) "solar_time" = solar time estimated with solaR package on R. "month" = month of the year. "iso_pm" = Isoprene concentration (pM) "chla_fluo" = Chlorophyll-a (fluorometric) "chla_matchup" = Chlorophyll-a (MODIS Aqua) "sst_matchup" = Sea Surface Temperature (MODIS Aqua) "zeu_matchup" = Depth of the Euphotic Layer (MODIS Aqua) "poc_matchup" = Particulate Organic Carbon (MODIS Aqua) "pic_matchup" = Particulate Inorganic Carbon (MODIS Aqua) "mld_matchup" = Mixing Layer Depth (Holte et al. 2017) "par_matchup" = PAR radiation (MODIS Aqua) "lat" = Latitude (decimal degrees) "lon" = Longitude (decimal degrees)
DOI: 10.5519/qd.nscx8hrw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (83998 records)
DOI: 10.5281/zenodo.3822076
title: Data_Two sources of task prioritization: The interplay of effector-based and task order-based capacity allocation in the PRP paradigm

description: Data of 'Two sources of task prioritization: The interplay of effector-based and task order-based capacity allocation in the PRP paradigm' Hoffmann, Pieczykolan, Koch, & Huestegge, comparing RT data and error rates of oculomotor, vocal, and manual responses in a PRP setting
DOI: 10.6073/pasta/5287350a9c456aa19a91ac4d8f8673a1
title: Moths, Ants and Pitcher Plants in Bogs at Harvard Forest and Belchertown MA 2007-2013

description: Ecologists have long recognized that coexistence of interacting species depends on a diversity of separate, but linked habitats. Most models of species coexistence treat these habitat "patches" as unchanging elements of the landscape, but in reality, they are constantly changing in size and shape. The structure and dynamics of the food webs that inhabit them both control and depend on these changes. In this five-year (2006-2011) collaborative project, we are using a combination of extensive field surveys and intensive field experiments to understand how species interactions change the spatial distribution of dynamic habitat patches across the landscape, and to determine how food webs are structured within and among these patches. The experimental system for this five-year research project is the Sarracenia "microecosystem": the northern pitcher-plant Sarracenia purpurea; the unique food web of bacteria, protozoa, rotifers, mites, and fly larvae that live within its rainwater-filled leaves; three species of bog-inhabiting ants that are the primary prey for this carnivorous plant; and larvae of the pitcher-plant moth, Exyra fax, which cut and drain pitchers and remove food web habitat. Results from surveys of bogs in all six New England state and field experiments conducted at bogs at Harvard Forest and Belchertown, Massachusetts will be used to parameterize a simulation model to predict changes in spatial structure of ant, moth, and plant populations, and the structure and composition of the aquatic food web associated with the plant. This work is funded by the U.S. National Science Foundation, through collaborative awards 0541680 and 0541936.
DOI: 10.5281/zenodo.3820858
title: DRAM Minimal Databases

description: The minimal set of DRAM databases. Used for set up of KBase DRAM installation.
DOI: 10.5281/zenodo.3822075
title: Data_Two sources of task prioritization: The interplay of effector-based and task order-based capacity allocation in the PRP paradigm

description: Data of 'Two sources of task prioritization: The interplay of effector-based and task order-based capacity allocation in the PRP paradigm' Hoffmann, Pieczykolan, Koch, & Huestegge, comparing RT data and error rates of oculomotor, vocal, and manual responses in a PRP setting
DOI: 10.15468/fpuuef
title: Not all spotted cats are leopards: evidence for a Hemilienardia ocellata species complex (Gastropoda: Conoidea: Raphitomidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fedosov, Alexander E., Stahlschmidt, Peter, Puillandre, Nicolas, Aznar-Cormano, Laetitia, Bouchet, Philippe (2017): Not all spotted cats are leopards: evidence for a Hemilienardia ocellata species complex (Gastropoda: Conoidea: Raphitomidae). European Journal of Taxonomy 268: 1-20, DOI: http://dx.doi.org/10.5852/ejt.2017.268
DOI: 10.15468/jdydyb
title: An assessment of the taxonomic status of the Mediterranean endemic genus Acrodiscus Zanardini (Halymeniales, Rhodophyta)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Manghisi, Antonio, Gall, Line Le, Bonillo, Céline, Gargiulo, Gaetano M., Ribeira, M. Antonia, Morabito, Marina (2017): An assessment of the taxonomic status of the Mediterranean endemic genus Acrodiscus Zanardini (Halymeniales, Rhodophyta). European Journal of Taxonomy 267: 1-24, DOI: http://dx.doi.org/10.5852/ejt.2017.267
DOI: 10.15468/ma9r7e
title: Distribution of Aureoboletus projectellus in Europe

description: Aureoboletus projectellus is an American bolete which was first reported in Europe at the end of the 20th century. At the beginning, it was only observed on the Baltic Sea shore. Recently, the range of this fungus has been expanding significantly. To predict the directions of its further dispersal, the current distribution of Aureoboletus projectellus in Europe is monitored by Department of Molecular Phylogenetics and Evolution (University of Warsaw, Poland). Several information on distribution of this species in Europe were gathered from different mycological forums and websites (e.g. bioforum.pl, senes.lv, schwammer.de), available published papers (e.g. Motiejūnaitė et al., 2011; Kutorga et al., 2012; Schreiner, 2015; Wrzosek et al., 2017) personal observations, and personal communications with mushroom hunters, national parks and foresters, amateur and professional mycologists. These data were used to prepare following paper: Banasiak et al. (2019). Related papers: 1) Banasiak Ł., Pietras M., Wrzosek M., Okrasińska A., Gorczak M., Kolanowska M., Pawłowska J. (2019) Aureoboletus projectellus (Fungi, Boletales) - An American bolete rapidly spreading in Europe as a new model species for studying expansion of macrofungi. Fungal Ecology 39: 94-99 and 2) Wrzosek M., Motiejunaite J., Kasparavicius J., Wilk M., Mukins E., Schreiner J., Vishnevskiy M., Gorczak M., Okrasińska A., Istel Ł., Pawłowska J. (2017). The progressive spread of Aureoboletus projectellus (Fungi, Basidiomycota) in Europe. Fungal Ecology 27: 134-136.
DOI: 10.15468/rckzbr
title: Philippine mossy forest stick insects: first record of the genus Otraleus Günther, 1935 in the country, with four new species, and the new genus Capuyanus gen. nov. (Phasmida, Diapheromeridae, Necrosciinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bresseel, Joachim, Constant, Jérôme (2017): Philippine mossy forest stick insects: first record of the genus Otraleus Günther, 1935 in the country, with four new species, and the new genus Capuyanus gen. nov. (Phasmida, Diapheromeridae, Necrosciinae). European Journal of Taxonomy 265: 1-31, DOI: http://dx.doi.org/10.5852/ejt.2017.265
DOI: 10.17632/zj9snmy57h.6
title: Data for: A hybrid analysis of LBSN data to early detect anomalies in crowd dynamics

description: This is a data set of 4,335,880 public posts published in Instagram, in the New York City area for 190 days.
DOI: 10.5281/zenodo.3822552
title: Linked COVID-19 Data: Johns Hopkins University (JHU) and European Centre for Disease Prevention and Control (ECDC)

description: Linked COVID-19 Data derived from <strong>Johns Hopkins University</strong> and <strong>European Centre for Disease Prevention and Control</strong> using the COVID-19 Ontology 10.5281/zenodo.3757828 developed for the Linked COVID-19 Data Dashboard: http://covid19data.link This files include data for covid19_jhu.ttl - COVID-19 data collected by the JHU covid19_ecdc.ttl - COVID-19 data collected by the ECDC This RDF files are based on https://pomber.github.io/covid19/timeseries.json https://opendata.ecdc.europa.eu/covid19/casedistribution/json/
DOI: 10.17632/ky4wrhxv2b.1
title: Data for: Sr-Nd-Pb isotope systematics of fine river sediments in southwest Japan: Indications for sediment provenance of the Northwest Pacific

description: Sr-Nd-Pb Isotope ratios of fine river sediments in SW Japan with compilation of Sr-Nd-Pb isotope ratios of basement rocks in Japan, desert sediments in China, river sediments in China and Taiwan, and seafloor sediments in the North Pacific reported by several authors.
DOI: 10.18112/openneuro.ds002790.v1.0.0
title: Put the name of your experiment here
DOI: 10.5281/zenodo.3819968
title: TAU Urban Acoustic Scenes 2020 Mobile, Development dataset

description: TUT Urban Acoustic Scenes 2020 Mobile development dataset consists of 10-seconds audio segments from 10 acoustic scenes: Airport - <em>airport</em> Indoor shopping mall - <em>shopping_mall</em> Metro station - <em>metro_station</em> Pedestrian street - <em>street_pedestrian</em> Public square - <em>public_square</em> Street with medium level of traffic - <em>street_traffic</em> Traveling by a tram - <em>tram</em> Traveling by a bus - <em>bus</em> Traveling by an underground metro - <em>metro</em> Urban park - <em>park</em> The dataset contains in total 64 hours of audio. Version 2 fixes synchronization between 118 segments from devices A, B, and C, and removes 5 incorrect audio segments.
DOI: 10.15468/abgb6h
title: The saber-toothed cat Homotherium latidens (Owen, 1846) from the lower Pleistocene locality Dafnero, Western Macedonia, Greece

description: This dataset contains the digitized treatments in Plazi based on the original journal article Koufos, George D., Kostopoulos, Dimitris S., Merceron, Gildas (2020): The saber-toothed cat Homotherium latidens (Owen, 1846) from the lower Pleistocene locality Dafnero, Western Macedonia, Greece. Geodiversitas 42 (10): 139-149, DOI: 10.5252/geodiversitas2020v42a10
DOI: 10.5255/ukda-sn-852300
title: Ethnography of biomedicine collaborations: bioethics, clinical trails, malaria science and IVF, 2007-2010
DOI: 10.6073/pasta/eb12c1e5904c33f561988559f932d213
title: Climate data for C1 data loggers (CR23X and CR1000), 2000 - ongoing, daily.

description: Climatological data were collected from the C1 climate station on Niwot Ridge (3018 m elevation) throughout the year. From 2000-06-24 to 2013-03-25, data were recorded using a Campbell Instruments CR23X data logger. Starting 2013-03-27, data were recorded using a Campbell Instruments CR1000 data logger. Maximum and minimum values were recorded instantaneously, with a sampling interval of 5 seconds. Daily means and totals were calculated from 17,280 individual measurements. The CR23X logger was programmed to generate both hourly and daily output. The CR1000 logger generated daily, hourly, and minute data until 2014-09-10, when these time periods were discontinued and only 10 minute raw data were collected.
DOI: 10.6073/pasta/ff11dc1f759fb202e6f985450295b3ee
title: Measurements of tidal creek discharge measurements during tidal creek lateral exchange measurements approximately every 15 minutes from beginning of flood tide to the following low tide, Rowley, MA, PIE LTER.

description: Measurement of the volume of water during lateral exchange measurements in tidal creek systems draining predominantly low-elevation marsh dominated by Spartina alterniflora (LM1 and LM2) and high-elevation marsh dominated by Spartina patens (West, Nelson, HM1). Creeks are located in Rowley, MA, PIE LTER.
DOI: 10.21942/uva.12280316
title: Sample Whole-Brain MP2RAGEME

description: Sample data set from the MP2RAGEME sequence, pre-processed to extract the brain and reconstruct quantitative R1, R2* and QSM maps.<br>
DOI: 10.21942/uva.12280316.v1
title: Sample Whole-Brain MP2RAGEME

description: Sample data set from the MP2RAGEME sequence, pre-processed to extract the brain and reconstruct quantitative R1, R2* and QSM maps.<br>
DOI: 10.25386/genetics.12284324
title: Supplemental Material for Osmond and Coop, 2020

description: fileS1.nb is the supplementary Mathematica notebook (also in open-source PDF and CDF formats; see https://www.wolfram.com/cdf/ for instructions on how to use the latter). <br>fileS2.pdf is the supplementary text, containing additional methods and results.<br>simulations.tar.gz is a compressed folder containing all simulation code and output.<br>figureS*.pdf are the supplementary figures.
DOI: 10.25386/genetics.12284324.v1
title: Supplemental Material for Osmond and Coop, 2020

description: fileS1.nb is the supplementary Mathematica notebook (also in open-source PDF and CDF formats; see https://www.wolfram.com/cdf/ for instructions on how to use the latter). <br>fileS2.pdf is the supplementary text, containing additional methods and results.<br>simulations.tar.gz is a compressed folder containing all simulation code and output.<br>figureS*.pdf are the supplementary figures.
DOI: 10.17632/9zd7d4cpnx.1
title: When did the Lhasa and Qiantang Terranes “divorce”: Constraints from Middle-Late Triassic Alkaline Trachytic Lavas

description: Data accompanying "When did the Lhasa and Qiantang Terranes “divorce”: constraints from Middle-Late Triassic alkaline trachytic lavas" by Yang Song, Haifeng Li, Carl Guilmette, Ming Zheng, Douwe J.J. van Hinsbergen, Zhenyu Li, Faqiao Li. Tectonics, 2020