cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15155851
title: Table S1. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Mean and median longevity values for Cohort 1 and Cohort 2 and Cox Proportional Hazard values for the full model.
DOI: 10.6084/m9.figshare.15155851.v1
title: Table S1. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Mean and median longevity values for Cohort 1 and Cohort 2 and Cox Proportional Hazard values for the full model.
DOI: 10.6084/m9.figshare.15155857
title: Table S3. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cohort 1 raw longevity data.
DOI: 10.6084/m9.figshare.15155857.v1
title: Table S3. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cohort 1 raw longevity data.
DOI: 10.6084/m9.figshare.15155863
title: R code for mated virgin experiment.R from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Females are in red, males blue. Each symbol type indicates a different genotype. Genotypes are represented by the same symbols in both cohorts.
DOI: 10.6084/m9.figshare.15155863.v1
title: R code for mated virgin experiment.R from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Females are in red, males blue. Each symbol type indicates a different genotype. Genotypes are represented by the same symbols in both cohorts.
DOI: 10.6084/m9.figshare.15155866
title: Table S4. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cohort 2 raw longevity data.
DOI: 10.6084/m9.figshare.15155860
title: Table S2. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cox Proportional hazard models controlling for vial effects
DOI: 10.6084/m9.figshare.15155860.v1
title: Table S2. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cox Proportional hazard models controlling for vial effects
DOI: 10.6084/m9.figshare.15155866.v1
title: Table S4. from Sex, mating and repeatability of <i>Drosophila melanogaster</i> longevity

description: Cohort 2 raw longevity data.
DOI: 10.6084/m9.figshare.14540625
title: Metadata record for: European primary forest database (EPFD) v2.0

description: This dataset contains key characteristics about the data described in the Data Descriptor European primary forest database (EPFD) v2.0. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.14540625.v1
title: Metadata record for: European primary forest database (EPFD) v2.0

description: This dataset contains key characteristics about the data described in the Data Descriptor European primary forest database (EPFD) v2.0. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.25678/0003zg
title: Data for: Robustness of mainstream anammox activity at bench and pilot scale

description: New technologies and processes, such as mainstream anammox, aim to reduce energy requirements of wastewater treatment and improve effluent quality. However, in municipal wastewater (MWW) anammox system are often unstable due to process control disturbance, influent variability, or unwanted nitrite oxidizing bacteria (NOB). This study examines the anammox system by focusing on anammox activity and its robustness in a mainstream environment. An 8 m3 pilot-scale sequencing batch reactor (SBR) receiving pretreated MWW (with external nitrite addition) was seeded with pre-colonized carriers. Within six months at 12–20 °C an anammox activity of 200 gN∙m-3∙d-1 was achieved. After the startup an anammox activity of 260 ± 83 gN∙m-3∙d-1 was maintained over 450 days. The robustness of the anammox activity was analyzed through three disturbance experiments. Anammox biofilm on carriers were exposed to dissolved oxygen (DO = 1.6 mg∙L-1, intermittent aeration), organic loading rate (OLR, C/N increased from 2:1 to 5:1) and temperature disturbances (20 °C to 12 °C) in triplicate 12 L bench scale reactors. The anammox activity and microbial community was monitored during these disturbances. The DO and OLR disturbance experiments were replicated at pilot scale to investigate upscaling effects. Bench and pilot scale anammox activity were unaffected by the DO disturbance. Similarly, an increase in OLR did not deteriorate the bench and pilot scale anammox activity, if nitrate was available. When, at bench scale, the reactor temperature was reduced from 20 °C to 12 °C overnight, anammox activity decreased significantly, this was not the case for the slow seasonal temperature changes (12–25 °C) at pilot scale where no strong temperature dependency was detected in winter. Metagenomic analysis revealed a broad range of Brocadiaceae species with no single dominant anammox species. Anammox thrive under mainstream conditions and can withstand typical process disruptions.
DOI: 10.5281/zenodo.5185062
title: Primary data for "Temperature-dependence of the clear-sky feedback in radiative-convective equilibrium"

description: Primary data for the manuscript "Temperature-dependence of the clear-sky feedback in radiative-convective equilibrium". The archive is described in more detail in the enclosed README file.
DOI: 10.6084/m9.figshare.14052269
title: Metadata record for: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

description: This dataset contains key characteristics about the data described in the Data Descriptor Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.14052269.v1
title: Metadata record for: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

description: This dataset contains key characteristics about the data described in the Data Descriptor Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.25345/c59c2v
title: MassIVE MSV000087973 - GNPS_QC1_False_Discovery_Rate_ESI_positive
title: random sample for testing data processing in terms of false discovery rate
DOI: 10.6084/m9.figshare.15149097
title: Plantago_major.evm.gff

description: Gene Structure Annotation of Plantago major
DOI: 10.5281/zenodo.5119267
title: Raw data to: "Persistent RNA virus infection is short-lived at the single cell level but leaves transcriptomic footprints"

description: Raw data underlying the publication by Reuther and Martin et al. entitled "Persistent RNA virus infection is short-lived at the single cell level but leaves transcriptomic footprints"
DOI: 10.5281/zenodo.5119266
title: Raw data to: "Persistent RNA virus infection is short-lived at the single cell level but leaves transcriptomic footprints"

description: Raw data underlying the publication by Reuther and Martin et al. entitled "Persistent RNA virus infection is short-lived at the single cell level but leaves transcriptomic footprints"
DOI: 10.5281/zenodo.5184773
title: Training data for MaxQuant and Msstats TMT analysis in Galaxy

description: The files serve as input and intermediate results for a MaxQuant and MsstatsTMT training on lysine methyl transferase 9 knockdown and control cell proteomics (https://doi.org/10.1186/s12935-020-1141-2) in the Galaxy training network (https://training.galaxyproject.org). Input files: human FASTA protein database for Maxquant. MaxQuant experimental design template, MSstatsTMT annotation file Intermediate result files: MaxQuant protein groups and evidence
DOI: 10.25405/data.ncl.15060786
title: Tensions and Mitigations Survey and Data

description: Survey form and data set collected for study described in paper "Tensions and Mitigations: Understanding Concerns and Values around Smartphone Data Collection for Public Health Emergencies"
DOI: 10.25405/data.ncl.15060786.v1
title: Tensions and Mitigations Survey and Data

description: Survey form and data set collected for study described in paper "Tensions and Mitigations: Understanding Concerns and Values around Smartphone Data Collection for Public Health Emergencies"
DOI: 10.5517/ccdc.csd.cc24sph4
title: CCDC 1989936: Experimental Crystal Structure Determination

description: Related Article: Alvaro Sanz-Vidal, Daniel Gaviña, Lia Sotorríos, Enrique Gómez-Bengoa, Fernando López Ortiz, María Sánchez-Roselló, Carlos del Pozo|2021|Chem.Commun.|57|8023|doi:10.1039/D1CC03161A
DOI: 10.5517/ccdc.csd.cc24spm8
title: CCDC 1989940: Experimental Crystal Structure Determination

description: Related Article: Alvaro Sanz-Vidal, Daniel Gaviña, Lia Sotorríos, Enrique Gómez-Bengoa, Fernando López Ortiz, María Sánchez-Roselló, Carlos del Pozo|2021|Chem.Commun.|57|8023|doi:10.1039/D1CC03161A
DOI: 10.5517/ccdc.csd.cc24tgl1
title: CCDC 1990683: Experimental Crystal Structure Determination

description: Related Article: Yuichi Kitagawa, Kenji Matsuda, Pedro Paulo Ferreira da Rosa, Koji Fushimi, Yasuchika Hasegawa|2021|Chem.Commun.|57|8047|doi:10.1039/D1CC03596G
DOI: 10.5517/ccdc.csd.cc26ps1r
title: CCDC 2046714: Experimental Crystal Structure Determination

description: Related Article: Alex T. O’Neil, John A. Harrison, Jonathan A. Kitchen|2021|Chem.Commun.|57|8067|doi:10.1039/D1CC02628C
DOI: 10.5517/ccdc.csd.cc27hszj
title: CCDC 2070768: Experimental Crystal Structure Determination

description: Related Article: Haoxuan Yuan, Kemiao Hong, Xiangrong Liu, Yu Qian, Xinfang Xu, Wenhao Hu|2021|Chem.Commun.|57|8043|doi:10.1039/D1CC02876F
DOI: 10.5517/ccdc.csd.cc27ht4q
title: CCDC 2070773: Experimental Crystal Structure Determination

description: Related Article: Haoxuan Yuan, Kemiao Hong, Xiangrong Liu, Yu Qian, Xinfang Xu, Wenhao Hu|2021|Chem.Commun.|57|8043|doi:10.1039/D1CC02876F
DOI: 10.5517/ccdc.csd.cc27zmyt
title: CCDC 2085027: Experimental Crystal Structure Determination

description: Related Article: Marjan Hosseinzadeh, Sergio Sanz, Jan van Leusen, Natalya V. Izarova, Euan K. Brechin, Scott J. Dalgarno, Paul Kögerler|2021|Chem.Commun.|57|8087|doi:10.1039/D1CC02910J
DOI: 10.5517/ccdc.csd.cc24tgk0
title: CCDC 1990682: Experimental Crystal Structure Determination

description: Related Article: Yuichi Kitagawa, Kenji Matsuda, Pedro Paulo Ferreira da Rosa, Koji Fushimi, Yasuchika Hasegawa|2021|Chem.Commun.|57|8047|doi:10.1039/D1CC03596G
DOI: 10.5517/ccdc.csd.cc2860l3
title: CCDC 2091154: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.25919/fkm4-xz20
title: Optimisation of mealworm (Tenebrio molitor) proteome using Discovery proteomics

description: Protein extraction protocol optimisation work was performed to assess the optimum buffer compositions from mealworm powder. Upon protein extraction, samples were analysed and assessed using discovery proteomics experiments.
DOI: 10.7910/dvn/2ijmfc
title: nicst registry review docdat

description: The source data required for NICS docdat assessment
DOI: 10.5281/zenodo.5185364
title: Raw and aggregated data for the study introduced in the article "An analysis of citing and referencing habits across all scholarly disciplines: approaches and trends in bibliographic metadata errors"

description: This dataset contains all the raw data and aggregated data subject of the study introduced in the article "An analysis of citing and referencing habits across all scholarly disciplines: approaches and trends in bibliographic metadata errors". The study is based on the bibliographic and citation data contained in 729 articles published in 147 journals in 27 subject areas. The articles contained a total amount of 34,140 bibliographic references and 55,100 mentions and quotations overall. The dataset is composed of a series of files: the files "subject_area_&lt;discipline-name&gt;.csv" contain the raw data of the articles published in the journals of all the disciplines considered in the study; the file "article_data_summary.csv" contains the aggregated data created considering the raw data in the previous files, which have been used to creating all the tables and figures in the article; the file "starred_metadata_set.csv" contains information about the most used subset of bibliographic metadata; the file "journals_selection.csv" contains information about all the journals selected for the study.
DOI: 10.5281/zenodo.5185363
title: Raw and aggregated data for the study introduced in the article "An analysis of citing and referencing habits across all scholarly disciplines: approaches and trends in bibliographic metadata errors"

description: This dataset contains all the raw data and aggregated data subject of the study introduced in the article "An analysis of citing and referencing habits across all scholarly disciplines: approaches and trends in bibliographic metadata errors". The study is based on the bibliographic and citation data contained in 729 articles published in 147 journals in 27 subject areas. The articles contained a total amount of 34,140 bibliographic references and 55,100 mentions and quotations overall. The dataset is composed of a series of files: the files "subject_area_&lt;discipline-name&gt;.csv" contain the raw data of the articles published in the journals of all the disciplines considered in the study; the file "article_data_summary.csv" contains the aggregated data created considering the raw data in the previous files, which have been used to creating all the tables and figures in the article; the file "starred_metadata_set.csv" contains information about the most used subset of bibliographic metadata; the file "journals_selection.csv" contains information about all the journals selected for the study.
DOI: 10.15468/0nwdvo
title: Liste des taxons évalués RLA Flore NC

description: Liste des taxons évalués par RLA Flore NC (à fin avril 2017) et soumis à l'UICN pour export GBIF LE RLA FLORE NC Il rassemble largement les experts locaux et internationaux (amateurs, professionnels exerçant dans le privé ou le public…) détenteurs de connaissance sur la flore calédonienne (taxonomie, écologie, connaissance terrain…) et les menaces qui pèsent sur son intégrité. LA LISTE ROUGE Etablie conformément aux critères de l’UICN, la Liste rouge de la flore menacée de Nouvelle-Calédonie vise à dresser un bilan objectif du degré de menace pesant sur la flore. Cet inventaire de référence, fondé sur une solide base scientifique et réalisé à partir des meilleures connaissances disponibles, contribue à mesurer l’ampleur des enjeux, les progrès accomplis et les défis à relever en Nouvelle-Calédonie. La méthodologie de l’UICN s’appuie sur des critères d’évaluation associés au risque d’extinction d’une espèce: taille et structure de sa population, déclin des populations, répartition géographique, degré de fragmentation… En confrontant la situation de chaque espèce aux différents seuils quantitatifs fixés pour chacun des critères et aux menaces estimées, on définit si elle se classe dans l’une des catégories d’espèces menacées (CR, EN, VU) sur la base des connaissances disponibles.
DOI: 10.24396/ordar-81
title: rumurutite

description: Data of R chondrules
DOI: 10.6084/m9.figshare.15155973.v1
title: Sequence subtyping of <i>Trichomonas gallinae</i> from Bonelli’s eagle (<i>Aquila fasciata</i>) during four years (2014–2017) reveals that MLS type is associated with lesions

description: Avian trichomonosis is a parasitic disease that affects wild birds. The objective of this work was to determine the importance of avian trichomonosis in Bonelli’s eagles to improve conservation measures in this population. One hundred and eighty-eight birds were studied: 181 chicks, two juveniles, one subadult and four adults. The birds were externally examined and gross lesions at the oropharynx registered. Samples from the oropharyngeal cavity were obtained for <i>Trichomonas</i> spp. detection by culture and PCR, and positive samples were subjected to a multilocus sequence typing approach, including the ITS1/5.8S/ITS2 region (ITS), ribosomal RNA small subunit (18S) and Fe-hydrogenase gene (FeHyd). Global prevalence of <i>T. gallinae</i> infection was 37.8% in total, 45.5% in nestlings. Thirty-three percent of the birds developed lesions that ranged from mild (<i>n</i> = 41) to moderate (<i>n</i> = 14) or severe (<i>n</i> = 7). Multilocus sequence typing analysis showed five different MLS types, ITS-A/18S-VI/FeHyd-A1 and ITS-D/18S-II/Fe-C4 being the most frequent. An association between ITS-A/18S-VI/FeHyd-A1 and moderate or severe lesions was observed, but birds with type ITS-A/18S-VI/FeHyd-A2 also developed lesions. On the contrary, birds with MLS type ITS-D/18S-II/FeHyd-C4 displayed only a low proportion of mild lesions. Chicks raised in nests were at higher risk for <i>T. gallinae</i> infection and development of lesions than chicks raised in captivity. Discordances between samples cultured in TYM and samples subjected to PCR from oropharyngeal swabs were observed, swab-ITS-PCR being more sensitive. RESEARCH HIGHLIGHTS45.5% of Bonelli’s eagles in the nest carried <i>T. gallinae</i> and 39.4% showed lesions.PCR from oral swabs showed higher sensitivity than culture in TYM for detection of <i>T. gallinae</i>.MLS types ITS-A/18S-VI/Fe-A1 (and A2) are a risk factor for the development of lesions. 45.5% of Bonelli’s eagles in the nest carried <i>T. gallinae</i> and 39.4% showed lesions. PCR from oral swabs showed higher sensitivity than culture in TYM for detection of <i>T. gallinae</i>. MLS types ITS-A/18S-VI/Fe-A1 (and A2) are a risk factor for the development of lesions.
DOI: 10.6084/m9.figshare.15155973
title: Sequence subtyping of <i>Trichomonas gallinae</i> from Bonelli’s eagle (<i>Aquila fasciata</i>) during four years (2014–2017) reveals that MLS type is associated with lesions

description: Avian trichomonosis is a parasitic disease that affects wild birds. The objective of this work was to determine the importance of avian trichomonosis in Bonelli’s eagles to improve conservation measures in this population. One hundred and eighty-eight birds were studied: 181 chicks, two juveniles, one subadult and four adults. The birds were externally examined and gross lesions at the oropharynx registered. Samples from the oropharyngeal cavity were obtained for <i>Trichomonas</i> spp. detection by culture and PCR, and positive samples were subjected to a multilocus sequence typing approach, including the ITS1/5.8S/ITS2 region (ITS), ribosomal RNA small subunit (18S) and Fe-hydrogenase gene (FeHyd). Global prevalence of <i>T. gallinae</i> infection was 37.8% in total, 45.5% in nestlings. Thirty-three percent of the birds developed lesions that ranged from mild (<i>n</i> = 41) to moderate (<i>n</i> = 14) or severe (<i>n</i> = 7). Multilocus sequence typing analysis showed five different MLS types, ITS-A/18S-VI/FeHyd-A1 and ITS-D/18S-II/Fe-C4 being the most frequent. An association between ITS-A/18S-VI/FeHyd-A1 and moderate or severe lesions was observed, but birds with type ITS-A/18S-VI/FeHyd-A2 also developed lesions. On the contrary, birds with MLS type ITS-D/18S-II/FeHyd-C4 displayed only a low proportion of mild lesions. Chicks raised in nests were at higher risk for <i>T. gallinae</i> infection and development of lesions than chicks raised in captivity. Discordances between samples cultured in TYM and samples subjected to PCR from oropharyngeal swabs were observed, swab-ITS-PCR being more sensitive. RESEARCH HIGHLIGHTS45.5% of Bonelli’s eagles in the nest carried <i>T. gallinae</i> and 39.4% showed lesions.PCR from oral swabs showed higher sensitivity than culture in TYM for detection of <i>T. gallinae</i>.MLS types ITS-A/18S-VI/Fe-A1 (and A2) are a risk factor for the development of lesions. 45.5% of Bonelli’s eagles in the nest carried <i>T. gallinae</i> and 39.4% showed lesions. PCR from oral swabs showed higher sensitivity than culture in TYM for detection of <i>T. gallinae</i>. MLS types ITS-A/18S-VI/Fe-A1 (and A2) are a risk factor for the development of lesions.
DOI: 10.5281/zenodo.5185708
title: yangclaraliu/armslist_scraping: provide access to data

description: This is the data used in the research letter: Drake, Coleman, Ashley M. Hernandez, Yang Liu, Adam H. Schwartz, and Maria E. Sundaram. "Evidence of Background Checks in an Online Firearms Marketplace." <em>American journal of preventive medicine</em> 57, no. 5 (2019): 718. https://www.ajpmonline.org/article/S0749-3797(19)30273-9/fulltext#%20
DOI: 10.5281/zenodo.5185707
title: yangclaraliu/armslist_scraping: provide access to data

description: This is the data used in the research letter: Drake, Coleman, Ashley M. Hernandez, Yang Liu, Adam H. Schwartz, and Maria E. Sundaram. "Evidence of Background Checks in an Online Firearms Marketplace." <em>American journal of preventive medicine</em> 57, no. 5 (2019): 718. https://www.ajpmonline.org/article/S0749-3797(19)30273-9/fulltext#%20
DOI: 10.5281/zenodo.5185433
title: Mapping GPIIb/IIIa on murine blood platelets with expansion microscopy

description: <strong>Mapping GPIIb/IIIa on murine blood platelets with expansion microscopy</strong> We visualize the membrane architecture of platelets by mapping platelet integrin GPIIb/IIIa by super-resolution fluorescence. Our approach combines colocalization and expansion microscopy and successfully interrogates highly abundant receptors and their interactions where conventional methods fail in such dense 3D scenarios (https://doi.org/10.1101/2021.02.16.431449) Here we provide a s<em>election of typical images</em> of receptor distributions on unexpanded and expanded murine platelets, the <em>code</em> for simulation of platelet receptor distributions including a <em>user manual </em>and a <em>video protocol </em>of 10x expansion microscopy with resting platelets. <strong>Sample images: </strong> Unexpanded, 4x expanded and 10x expanded resting murine platelets on glycine coated coverslips were imaged on a SP5 confocal microscope (detailed methods can be found in the manuscript). There are three different labeling combinations: Case I: directly immunolabeled with monoclonal antibodies antibodies carrying Alexa Fluor 488 (MWReg30, green channel) or Alexa Fluor 594 (JON6, magenta channel) can bind simultaneously on the same GPIIb/IIIa receptor -&gt; high colocalization Case II: directly immunolabeled with a monoclonal antibody targeting GPIIb/IIIa (MWReg30) carrying either Alexa Fluor 594 or Alexa Fluor 488) -&gt; low colocalizaiton Case III: directly immunolabeld with monoclonal antibodies carrying Alexa Fluor 488 targeting GPIIb/IIIa (JON6) and carrying Alexa Fluor 594 targeting GPIX (p0p6) -&gt; low colocalization The provided sample images are .ims (Imaris) files contain the raw data, chromatic aberration corrected data & deconvolved data as consecutive time points, as well as the cropped image stack of a single platelet with the masked data used for colocalization analysis. <strong>MatLab Scipts: 3D-Image simulation of Platelet Receptor Distributions</strong> The provided MatLab scripts allow to create 2-color, 3D image stacks based on simulated platelet receptor distributions and the image resolution provided by confocal microscopy and sample expansion. Refer to the user manual for a detailed description of how to set up and run the simulation. <strong>Video Protocol:</strong> <strong>10x expansion microscopy with resting platelets.</strong> The provided video protocol describes the sample preperation for 10x expansion microscopy of resting platelets, including platelet washing, immunolabeling, gelation, digestion, expansion and sample mounting for imaging. Detailed step by step protocols are also provided in the supplementary material (https://doi.org/10.1101/2021.02.16.431449).