cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9791417.v1
title: Supplementary Material for: Spoilt for Choice: A Survey of Current Practices of Surgical Urinary Stone Treatment and Adherence to Evidence-Based Guidelines among Swiss Urologists

description: <b><i>Introduction:</i></b> Urologists have to master a variety of techniques to be able to offer the most appropriate surgical stone treatment for each individual patient. Therefore, we performed a survey among board-certified Swiss urologists to assess the availability of the different surgical methods, the current practices of surgical treatment of urolithiasis and the adherence to evidence-based guideline recommendations in Switzerland. <b><i>Methods:</i></b> A 14-question survey assessed the working environment, equipment, perioperative settings and decision trees for specific stone scenarios. Data was analyzed using descriptive statistics and chi-square tests to determine differences between frequencies of answers. <b><i>Results:</i></b> Hundred and five members of <i>Swiss Urology</i> (38%) completed the survey. All treatment modalities are available for the majority of respondents. Ureterorenoscopy was found to have the highest availability (100%) and was the preferred choice in the majority of stone scenarios. A high adherence to the guidelines was found for the treatment of ureteral stones &lt;10 mm (100% proximal and distal), and &gt;10 mm (69% proximal, 94% distal). All respondents answered in accordance with the guidelines regarding the treatment of middle and upper pole stones &lt;10 mm, 10–20 mm and lower pole stones 10–20 mm. Guideline adherence was 99% for lower pole stones &lt;10 mm, 78% for lower pole stones &gt;20 mm, and 63% for middle/upper pole stones &gt;20 mm. <b><i>Conclusion:</i></b> This survey provides a detailed insight into current stone treatment practices in Switzerland. The full spectrum of urinary stone treatment options is available for the majority of Swiss urologists. The choice of treatment shows a high accordance with evidence-based guidelines and a preference for retrograde endoscopic surgery in the majority of stone scenarios.
DOI: 10.6084/m9.figshare.21498561.v2
title: Performance_041022.mat

description: Video from the performance done on 04/10/22.
DOI: 10.6084/m9.figshare.21644429.v1
title: EEG Dataset for 'Immediate effects of short-term meditation on sensorimotor rhythm-based brain–computer interface performance'

description: This database includes the de-identified EEG data from 37 healthy individuals who participated in a brain-computer interface (BCI) study. All but one subject underwent 2 sessions of BCI experiments that involved controlling a computer cursor to move in one-dimensional space using their “intent”. EEG data were recorded with 62 electrodes. In addition to the EEG data, behavioral data including the online success rate and results of BCI cursor control are also included. This dataset was collected under support from the National Institutes of Health via grants AT009263, EB021027, NS096761, MH114233, RF1MH to Dr. Bin He. Correspondence about the dataset: Dr. Bin He, Carnegie Mellon University, Department of Biomedical Engineering, Pittsburgh, PA 15213. E-mail: bhe1@andrew.cmu.edu This dataset has been used and analyzed to study the immediate effect of short meditation on BCI performance. The results are reported in: Kim et al, “Immediate effects of short-term meditation on sensorimotor rhythm-based brain–computer interface performance,” Frontiers in Human Neuroscience, 2022 (https://doi.org/10.3389/fnhum.2022.1019279). Please cite this paper if you use any data included in this dataset.
DOI: 10.6084/m9.figshare.9730700.v1
title: Placement files and comparison from A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades

description: The two jplace files contain the results of EPA and pplacer. The .txt file is the comparison of these files conducted by the software genesis.
DOI: 10.17632/5hbfnnjfff
title: Dataset for "Accuracy and learning curves of inexperienced observers for manual segmentation of electromyograms"

description: The simulated SEMG(i) presents variable quantities of events, smooth changes in amplitude with marked on-off timing, and variable SNR. Globally, 1.200 SEMG were synthesized using sets of uniformly distributed random values for σn (single events durations in range 50 to 150 ms), αn (1 to 2.5), and SNR (0 to 39 dB). All simulated components – r(i), gn(i), sn(i), and e(i) – were stored as ASCII files in a database and are available upon request. Notice that the SNR does not depend on the duration of the simulated contraction event. The SNR ratio per event was calculated as the 10log10 (σ2y /σ2e), where σ2y and σ2e represent calculated variances of y(i) and e(i), respectively. All signals were simulated with a sampling frequency of 1.0 kHz. No additional signal processing was performed in the SEMG(i).
DOI: 10.17632/5y2pj9y2bc
title: Efficacy and safety of oral upadacitinib monotherapy in patients with recalcitrant vitiligo

description: Mendeley supplemental figure 1.  Patients 1 and 10 before and after 8 and 16 weeks of treatment
DOI: 10.6084/m9.figshare.12268673.v2
title: Efficient Parameter Sampling for Markov Jump Processes

description: Markov jump processes (MJPs) are continuous-time stochastic processes widely used in a variety of applied disciplines. Inference typically proceeds via Markov chain Monte Carlo (MCMC), the state-of-the-art being a uniformization-based auxiliary variable Gibbs sampler. This was designed for situations where the process parameters are known, and Bayesian inference over unknown parameters is typically carried out by incorporating it into a larger Gibbs sampler. This strategy of sampling parameters given path, and path given parameters can result in poor Markov chain mixing. In this work, we propose a simple and efficient algorithm to address this problem. Our scheme brings Metropolis–Hastings (MH) approaches for discrete-time hidden Markov models to the continuous-time setting, resulting in a complete and clean recipe for parameter and path inference in MJPs. In our experiments, we demonstrate superior performance over Gibbs sampling, a more naïve MH algorithm, as well as another popular approach, particle MCMC. We also show our sampler inherits geometric mixing from an “ideal” sampler that is computationally much more expensive. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.18130796.v1
title: Supplementary material

description: Supplementary material for 'The exaggerated inflammatory response to bacterial products in decompensated cirrhotic patients is orchestrated by interferons, IL-6 and IL-8' manuscript<b></b>
DOI: 10.6084/m9.figshare.27094738.v1
title: Supplementary Material for: Confronting Complexity : SBRT for Localized Lung Cancer with a Pacemaker - case report

description: Introduction : 
Lung cancer management in patients with pacemakers presents unique challenges. 
This report examines the utilization of Stereotactic Body Radiation Therapy (SBRT) in such a patient population.
Case Presentation : 
A 75-year-old former smoker with a dual-chamber pacemaker presented with inoperable lung adenocarcinoma. SBRT (48 Gy in 4 fractions) was chosen following multidisciplinary consultation and thorough pre-treatment evaluation by a rhythmologist to assess pacemaker integrity. Continuous cardiac monitoring during SBRT detected no arrhythmias. Adjuvant therapy consisted of radiotherapy alone due to the patient's health status and limited evidence supporting chemotherapy in this context. At the 18-month follow-up, no cancer recurrence was observed, and regular device checks confirmed pacemaker integrity.
Conclusion: 
This case demonstrates the successful management of inoperable lung adenocarcinoma with SBRT in a patient with a pacemaker. It underscores the significance of interdisciplinary cooperation and careful patient assessment to optimize treatment outcomes in this challenging clinical scenario.
DOI: 10.6084/m9.figshare.28777334.v1
title: rawdata

description: AoVps18 regulates sporulation, trap morphogenesis, and nematode predation by modulating vacuole assembly and attractant synthesis in Arthrobotrys oligospora
DOI: 10.17632/wd959kzvxh
title: Data for: Sources, abundances, size and distribution of microplastic in marine sediments - a Critical Review

description: Microplastics are prevalent in marine environments. A scientometric analysis of 364 data points provides the basis for sources, abundances, and spatial distribution of microplastic in marine sediments. This review aims to describe the state-of-the-art study of microplastic and marine pollution between 2010 and 2020 using Harzing’s Publish or Perish. 364 journal articles were analyzed through the combination of scientometric analysis and critical reviews. Publication, keywords analysis, and bibliographical data and evolution of microplastic were visualized using VOSviewer. We identified microplastics in the marine environment on 308 different sites by the authors of 67 countries. Four research concepts and corresponding challenges of microplastic in the marine environment.
DOI: 10.6084/m9.figshare.13013741.v1
title: ECMWF YOPP dataset workflow

description: Schematic of the YOPP dataset production framework: The ini-tial conditions and ensemble forecasts are generated by ECMWF’s operationalforecasting system based on ensembles of data assimilation and models. Atmo-sphere, land and ocean waves are separate from the ocean and sea-ice circulationin the data assimilation system, while the forecasts are fully coupled. Only the unperturbed control experiment output is ingested in the YOPP dataset from day 0 to day 15, and complemented by physical process tendency output from day 0 to day 2
DOI: 10.6084/m9.figshare.4811173.v1
title: Dispersal events from Reproductive seasonality, sex ratio and philopatry in Argentina's common vampire bats

description: Distance, sex, and time between recaptures of dispersed bats
DOI: 10.6084/m9.figshare.5624959.v1
title: Dataset RSTB-2016-0441.xlsx

description: Dataset RSTB-2016-0441<br>
DOI: 10.17632/cts2jkgvrw
title: Soil Geotechnical Properties Dataset for a Tremor Area of South-West Nigeria

description: The data contain soil geotechnical parameters collected from nine locations in a tremor area. The Data contain the following featurees:
1. NMC: Natural Moisture Content
2. Gs: Specific Gravity
3. PL: Plastic Limit
4. PI: Plasticity Index
5. LI: Liquidity Index
6. FL: Flow Index
7. TI: Toughness Index
8. G: Gravel 
9. CS: Coarse sand
10. MS: Medium Sand
11. F: Fine Content
12. OMC: Optimum Moisture Content
13. MDD: Maximum Dry Density
14. Consistency Limit classification
15. Grain Size Classification
16. Cohension
17. Angle of Friction
18. Coefficient of Compressibility
19. Preconsolidation Pressure
20. Compression Index
21. Swelling Index
22. Recompression Index
23. Coefficient of Compressibility
24. Settlement
25 Permeability
DOI: 10.6084/m9.figshare.28929617.v1
title: conceptual modelling

description: The data sets is presented
DOI: 10.6084/m9.figshare.3840192.v1
title: Permissions documents for reproduction of third party copyrighted works in Flow Synthesis of Silver Nanowires

description: This fileset includes PDFs of documents giving me permission to reproduce the third party copyrighted works in my PhD thesis <i>Flow Synthesis of Silver Nanowires</i>.
DOI: 10.6084/m9.figshare.17152481.v1
title: Alpine rockwall erosion patterns follow elevation-dependent climate trajectories

description: The data set comprises rock surface temperatures used to model permafrost distribution and frost weathering, and rockfall volume and location derived from terrestrial laserscanning. All data was collected in the Hungerli Valley, Swiss Alps.<br>
DOI: 10.6084/m9.figshare.22647850.v2
title: Data for "Discrete simulations of fluid-driven transport of naturally shaped sediment particles"

description: There are three folders:data: contains data (flume and wide wall-free geometries) and the corresponding matlab (.m) files to make the figures used in the manuscriptprogram: contains the code for the DEM-LBM simulations, as well as some examples (flume simulations). See readme.txt for how to compile the code and run simulations.videos: contains the two SI videos
DOI: 10.6084/m9.figshare.28773545.v1
title: Supplementary Material 20250217 clean.pdf

description: GueguenT,MartinerieL,CastetsS,et al.Supplementary material for: Inhibin B and AMH for diagnosis of hypogonadotropic hypogonadism in boys under one year of age: a case-control study.
DOI: 10.6084/m9.figshare.745353.v1
title: Display HTML demo

description: Display HTML demo
DOI: 10.17632/6vc65xttmv
title: Supply Chain Management South Korea Survey

description: This is a data set used for research regarding the supply chain resilience of South Korean manufacturing firms. The data was collected in 2020 amid the Covid-19 pandemic. Firms exhibited supply chain resilience, supply chain disruption orientation among other characteristics.
DOI: 10.6084/m9.figshare.12752453.v5
title: Reproduction of Black Soldier Fly (Diptera: Stratiomyidae) under Different Adult Densities and Light Regimes

description: The black soldier fly (BSF) <i>Hermetia illucens</i> L. (Diptera: Stratiomyidae) has been recognized as a promising insect species for sustainable management of organic waste and by-products. Indoor breeding of BSF with artificial lighting has been proved successful, but efforts are still needed to optimize BSF reproductive output. Increasing adult density seems an option to exploit space, whereas decreasing artificial lighting duration may reduce unnecessary power consumption. This study aimed at investigating the effects of adult density (10, 25, and 50 pairs per 30 × 30 × 30 cm cage; i.e., 370, 926, and 1852 pairs/m<sup>3</sup>), light regime (8:16, 12:12, and 16:8 [L:D] h), and their possible interactions, on some BSF life history traits relevant to reproduction. The results show that the overall BSF reproductive output increased with increasing adult density but was not affected by light regimes tested <i>per se</i>. With the highest BSF adult density tested, an average of more than 20,000 neonate larvae were produced from a cage within 10 d. At the highest adult density tested, increasing photoperiod increased neonate production, but also decreased the number of neonates per watt used for artificial illumination. The temporal oviposition patterns, mean individual female reproductive output, mating success, egg hatching rate, and insect survival rate were not affected by adult density or light regime as simple effects. However, the interaction between adult density and light regime was significant for the first oviposition peak, mean individual female reproductive output, and insect survival rate. The possible mechanisms behind our results are discussed.
DOI: 10.6084/m9.figshare.24759615.v1
title: AgriMPs_SJC_DataFile.xlsx

description: The data file supports the manuscript entitled 'Agricultural fertilisers contribute substantially to microplastic concentrations in UK soils'.Data from microplastic analysis of agricultural soils from the Broadbalk winter wheat experiment at Rothamsted Research. The available data is part of a time-series analysis of soils from the Rothamsted Sample Archive.
DOI: 10.6084/m9.figshare.28194065.v3
title: Bacillus cereus wgMLST scheme

description: Backup of the BioNumerics Bacillus cereus wgMLST scheme.
DOI: 10.17632/89cnxc58kj
title: ESCA-dataset

description: The dataset provide a collection of images of grapevine leaves, related to two classes: unhealthy leaves acquired from plants affected by Esca disease and healthy leaves. The data presented has been collected to be used in a research project jointly developed by the Department of Information Engineering, Polytechnic University of Marche, Ancona, Italy and the STMicroelectronics, Italy, under the cooperation of the Umani Ronchi SPA winery, Osimo, Ancona, Marche, Italy.
DOI: 10.6084/m9.figshare.14247296.v1
title: Supplementary Material for: Identifying Responders and Exploring Mechanisms of Action of the Endobronchial Coil Treatment for Emphysema

description: <b><i>Background:</i></b> So far, 3 randomized controlled trials have shown that the endobronchial treatment using coils is safe and effective. However, the more exact underlying mechanism of the treatment and best predictors of response are unknown. <b><i>Objectives:</i></b> The aim of the study was to gain more knowledge about the underlying physiological mechanism of the lung volume reduction coil treatment and to identify potential predictors of response to this treatment. <b><i>Methods:</i></b> This was a prospective nonrandomized single-center study which included patients who were bilaterally treated with coils. Patients underwent an extensive number of physical tests at baseline and 3 months after treatment. <b><i>Results:</i></b> Twenty-four patients (29% male, mean age 62 years, forced expiratory volume in 1 s [FEV<sub>1</sub>] 26% pred, residual volume (RV) 231% pred) were included. Three months after treatment, significant improvements were found in spirometry, static hyperinflation, air trapping, airway resistance, treated lobe RV and treated lobes air trapping measured on CT scan, exercise capacity, and quality of life. The change in RV and airway resistance was significantly associated with a change in FEV<sub>1</sub>, forced vital capacity, air trapping, maximal expiratory pressure, dynamic compliance, and dynamic hyperinflation. Predictors of treatment response at baseline were a higher RV, larger air trapping, higher emphysema score in the treated lobes, and a lower physical activity level. <b><i>Conclusions:</i></b> Our results confirm that emphysema patients benefit from endobronchial coil treatment. The primary mechanism of action is decreasing static hyperinflation with improvement of airway resistance which consequently changes dynamic lung mechanics. However, the right patient population needs to be selected for the treatment to be beneficial which should include patients with severe lung hyperinflation, severe air trapping, and significant emphysema in target lobes.
DOI: 10.6084/m9.figshare.24902889.v6
title: Data Science for Environmental Justice PBL Module: Air Pollution Data

description: This is a PBL module on Air Pollution to be used in an introductory environmental science course to motivate students to analyze related environmental justice issues.Original data was from the US EPA data on "State EJScreen Data at the Block Group Level" (EJSCREEN_2023_BG_StatePct_with_AS_CNMI_GU_VI.csv) which was downloaded from https://www.epa.gov/ejscreen/download-ejscreen-data on December 20, 2023. (Note: Access to the EJSCREEN tool was removed during February 2005).This data was processed and cleaned as described in the data provenance document.Lecture Slides, Activity Sheets and Instructor Notes are available here.The following files are included:<b>Data Provenance and Data Dictionary: </b>Data Provenance and Data Dictionary.pdf<b>R Script for Data Processing:</b> EJSCREEN_Data_Curation_NC_Summarized_by_County.R<b>Processed Dataset for North Carolina:</b> EJScreen_State_BGLevel_NC_13Columns.csv<b>Curated Data used in the Module - Summarized Dataset for North Carolina (summarized by county): </b>EJScreen_State_BGLevel_NC_Summarized_By_County_13Columns.csv<b>Data Dictionary: </b>Data_Dictionary_EJSCREEN_2023_BG_Columns.pdf<b>Original Dataset from EPA/EJSCREEN from which Data was Extracted for North Carolina: </b>DS4EJ_EJSCREEN_2023_BG_StatePct_with_AS_CNMI_GU_VI.csv<br>
DOI: 10.6084/m9.figshare.3563100.v1
title: Appendix B. Detailed description of the applications.

description: Detailed description of the applications.
DOI: 10.17632/337mvx7nxn
title: CaDNetASR: Dry cow therapy and clinical mastitis research questionnaires

description: The 2019 and 2020 research questionnaires regarding dry cow therapy and clinical mastitis conducted through the Canadian Dairy Network for Antimicrobial Stewardship and Resistance (CaDNetASR).
DOI: 10.17632/r69rjpwwrj
title: Sense of Belonging and Grit in E-learning

description: This was collected from 441 postgraduate learners who responded via an online survey to examine the role of sense of belonging and grit toward e-learning usage. Structural Equation Modelling(SEM) via Smart PLS was utilized to analyze the data collected.
DOI: 10.6084/m9.figshare.11357012.v2
title: dataset.xlsx

description: results of a questionnaire survey
DOI: 10.17632/35vvns44m8
title: Anthropophilic and zoophilic dermatophytes express specific genes when infecting reconstructed human epidermis

description: Dermatophytoses are superficial fungal infections of the host keratinized structures. While anthropophilic dermatophytes generally cause mildly inflammatory lesions only in humans, zoophilic species are responsible for more severe lesions. Despite the increasing incidence of dermatophytosis worldwide, and the emergence of strains resistant to available antifungals, there is still a lack of information about the virulence mechanisms and the factors determining host-specificity of dermatophytes species. Here, we used a previously developed model based on reconstructed human epidermis (RHE) to compare the development of infection between the anthropophilic Trichophyton rubrum and the zoophilic Trichophyton benhamiae. By optimizing a method for the recovery of both human and fungal RNA from infected RHE, we were able to investigate the expression of host inflammatory factors and fungal genes, including subtilisins as potential virulence factors. By this means, we showed that dermatophytes deployed the same processes during infection in RHE as those observed during in vivo infection, validating the infection model in RHE as a valuable tool to study pathogenesis of dermatophytoses. Furthermore, we identified some robust fungal markers of infection, and highlighted different mechanisms deployed by zoophilic or anthropophilic dermatophyte species.
DOI: 10.6084/m9.figshare.27050101.v1
title: 2032 Data

description: 2032 data of Chinese adolescents.