cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7717835
title: Mini-review: effect sizes and meta-analysis for antifouling research

description: It is widely recognised that findings from experimental studies should be replicated before their conclusions are accepted as definitive. In many research areas, synthesis of results from multiple studies is carried out <i>via</i> systematic review and meta-analysis. Some fields are also moving away from null hypothesis significance testing, which uses <i>p</i> values to identify ‘significant’ effects, towards an estimation approach concerned with effect sizes and confidence intervals. This review argues that these techniques are underused in biofouling and antifouling (AF) research and discusses potential benefits of their adoption. They enable comparison of test surfaces even when these are not tested simultaneously, and allow results from repeated tests on the same surfaces to be combined. They also enable the use of published data to explore effects of different variables on the functioning of AF surfaces. AF researchers should consider using these approaches and reporting results in ways that facilitate future research syntheses.
DOI: 10.6084/m9.figshare.7717835.v1
title: Mini-review: effect sizes and meta-analysis for antifouling research

description: It is widely recognised that findings from experimental studies should be replicated before their conclusions are accepted as definitive. In many research areas, synthesis of results from multiple studies is carried out <i>via</i> systematic review and meta-analysis. Some fields are also moving away from null hypothesis significance testing, which uses <i>p</i> values to identify ‘significant’ effects, towards an estimation approach concerned with effect sizes and confidence intervals. This review argues that these techniques are underused in biofouling and antifouling (AF) research and discusses potential benefits of their adoption. They enable comparison of test surfaces even when these are not tested simultaneously, and allow results from repeated tests on the same surfaces to be combined. They also enable the use of published data to explore effects of different variables on the functioning of AF surfaces. AF researchers should consider using these approaches and reporting results in ways that facilitate future research syntheses.
DOI: 10.7284/102190
title: Multiplexed data collected during research cruise AT15-61 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717823
title: Supplementary Material for: <b><i>Panax notoginseng</i></b> Saponins Ameliorate Leukocyte Adherence and Cerebrovascular Endothelial Barrier Breakdown upon Ischemia-Reperfusion in Mice

description: <i>Panax notoginseng</i> saponins (PNS) are known as clinical anti-stroke herbal medicines. The aim of this study is to describe the impact of PNS on ischemia-reperfusion-induced cerebral microvasculature barrier dysfunction which has not been investigated yet. Mice were subjected to transient middle cerebral artery occlusion and PNS were administrated to mice 3 days before and 2 days after surgery. Leukocyte adhesion, albumin leakage, tight junctions and other parameters in the cortex were measured. The PNS 45 mg/kg intervention alleviated leukocyte adhesion, inhibited endothelial barrier alterations evidenced by reduced albumin leakage and tight junction degradations, and ultimately ameliorated infarct volumes and neurological deficits subsequent to ischemia-reperfusion. Taken together, <i>P. notoginseng</i> saponins are able to attenuate leukocyte-mediated microvascular disturbance at the onset of ischemic stroke.
DOI: 10.7284/102193
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT15-61 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717814
title: Data and information from Persistent effect of sex ratios on relationship quality and life satisfaction

description: Transformed data; regression tables; program. Please read the README file for full details.
DOI: 10.7284/102191
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT15-61 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717814.v1
title: Data and information from Persistent effect of sex ratios on relationship quality and life satisfaction

description: Transformed data; regression tables; program. Please read the README file for full details.
DOI: 10.7284/102192
title: Gravimeter data collected during research cruise AT15-61 using a Bell BGM-3 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717739
title: Forensic parameters and admixture in seven geographical regions of the Guerrero state (South, Mexico) based on STRs of the Globalfiler<sup>®</sup> kit

description: <b>Background:</b> New commercial STR kits have emerged with greater numbers of markers, which allows for obtaining stronger conclusions in forensic casework, which has been poorly studied in Mexico. <b>Aim:</b> To obtain forensic parameters and to analyse the genetic relationships, structure and admixture in seven geographic regions of Guerrero state (South, Mexico) based on the Globalfiler<sup>®</sup> kit. <b>Subjects and methods:</b> A total of 245 unrelated Mexican individuals from seven regions of the state of Guerrero were analysed with the Globalfiler<sup>®</sup> kit. Forensic parameters, pairwise comparisons, genetic distances, structure analysis and admixture levels were estimated. <b>Results:</b> Allele frequencies and forensic parameters of 22 STRs were estimated in this Mexican population sample. The combined power of exclusion and power of discrimination values were &gt; 99.9999% and &gt;99.99999999%, respectively. The Native American, European and African ancestries estimated in the Guerrero state population were 70.9%, 25.9% and 3.2%, respectively. <b>Conclusion:</b> Forensic validation of the Globalfiler<sup>®</sup> kit was performed in the Guerrero state population. The geographic isolation level seems to be the principal factor in defining genetic relationships and admixture among the Guerrero sub-populations. Despite the intrinsic limitations of STRs for admixture analysis, these results are very close to previous values based on AIMs and genome-wide SNPs.
DOI: 10.6084/m9.figshare.7717727
title: met_em.tar.gz

description: Met_Em
DOI: 10.7284/112016
title: Multibeam Echosounder data collected during research cruise AT15-61 using a SeaBeam 2112 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717640
title: Data from: Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics. Oikos

description: This is the data related with the manuscript "Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics", submitted to Oikos.<br>The files include code of the analysis and figures. This code was created by Orlando Acevedo-Charry, based in several "bloggers" and resource online, and with the encouragement of Zuania Colon and advise of Mitch Aide. Thank you so much!! There are 16 scripts for different analysis-figures. For each script there is included the packages used. Each script will run with the file "MainData.csv", but the "figure script" run with the results of the bootstraps (csv). Have fun!<br>
DOI: 10.6084/m9.figshare.7717727.v1
title: met_em.tar.gz

description: Met_Em
DOI: 10.6084/m9.figshare.7717739.v1
title: Forensic parameters and admixture in seven geographical regions of the Guerrero state (South, Mexico) based on STRs of the Globalfiler<sup>®</sup> kit

description: <b>Background:</b> New commercial STR kits have emerged with greater numbers of markers, which allows for obtaining stronger conclusions in forensic casework, which has been poorly studied in Mexico. <b>Aim:</b> To obtain forensic parameters and to analyse the genetic relationships, structure and admixture in seven geographic regions of Guerrero state (South, Mexico) based on the Globalfiler<sup>®</sup> kit. <b>Subjects and methods:</b> A total of 245 unrelated Mexican individuals from seven regions of the state of Guerrero were analysed with the Globalfiler<sup>®</sup> kit. Forensic parameters, pairwise comparisons, genetic distances, structure analysis and admixture levels were estimated. <b>Results:</b> Allele frequencies and forensic parameters of 22 STRs were estimated in this Mexican population sample. The combined power of exclusion and power of discrimination values were &gt; 99.9999% and &gt;99.99999999%, respectively. The Native American, European and African ancestries estimated in the Guerrero state population were 70.9%, 25.9% and 3.2%, respectively. <b>Conclusion:</b> Forensic validation of the Globalfiler<sup>®</sup> kit was performed in the Guerrero state population. The geographic isolation level seems to be the principal factor in defining genetic relationships and admixture among the Guerrero sub-populations. Despite the intrinsic limitations of STRs for admixture analysis, these results are very close to previous values based on AIMs and genome-wide SNPs.
DOI: 10.6084/m9.figshare.7717634
title: Dataset 1 Salmonella origin, biochemical and PCR results.xlsx

description: Describes the results of biochemical test and PCR typification of <i>Salmonella </i>isolated from layer farms in central Ecuador, 2017.
DOI: 10.7284/102194
title: Multiplexed data collected during research cruise AT15-62 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102196
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT15-62 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717634.v1
title: Dataset 1 Salmonella origin, biochemical and PCR results.xlsx

description: Describes the results of biochemical test and PCR typification of <i>Salmonella </i>isolated from layer farms in central Ecuador, 2017.
DOI: 10.7284/102195
title: Gravimeter data collected during research cruise AT15-62 using a Bell BGM-3 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102197
title: Multiplexed data collected during research cruise AT15-63 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102199
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT15-63 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717595
title: Additional file 8: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S5. p values from complete dataset and independent dataset (1 sample each patient) for Mann-Whitney U tests of different variables in this study. (XLSX 9 kb)
DOI: 10.7284/102198
title: Gravimeter data collected during research cruise AT15-63 using a Bell BGM-3 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717589
title: Additional file 7: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S4. Human and Pseudomonas aeruginosa peptides from MS-GF+ proteomics search against human and P. aeruginosa SwissProt genomes. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.7717595.v1
title: Additional file 8: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S5. p values from complete dataset and independent dataset (1 sample each patient) for Mann-Whitney U tests of different variables in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7717583
title: Additional file 5: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S2. Correlations between metabolites and 16S rRNA gene OTUs with Target FEV1%. (XLSX 438 kb)
DOI: 10.6084/m9.figshare.7717586
title: Additional file 6: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S3. Peptidomics data on human proteome as produced using PEAKS software. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.7717583.v1
title: Additional file 5: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S2. Correlations between metabolites and 16S rRNA gene OTUs with Target FEV1%. (XLSX 438 kb)
DOI: 10.6084/m9.figshare.7717589.v1
title: Additional file 7: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S4. Human and Pseudomonas aeruginosa peptides from MS-GF+ proteomics search against human and P. aeruginosa SwissProt genomes. (XLSX 103 kb)
DOI: 10.7284/112017
title: Multibeam Echosounder data collected during research cruise AT15-63 using a SeaBeam 2112 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717574
title: Additional file 3: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S6. 16S rRNA gene read abundance for sputum samples and blanks after illumina sequencing. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.7717586.v1
title: Additional file 6: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S3. Peptidomics data on human proteome as produced using PEAKS software. (XLSX 87 kb)
DOI: 10.7284/102200
title: Multiplexed data collected during research cruise AT15-64 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717574.v1
title: Additional file 3: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S6. 16S rRNA gene read abundance for sputum samples and blanks after illumina sequencing. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.7717562
title: Additional file 1: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S1. Samples and clinical information for patients included in this study. (XLSX 56 kb)
DOI: 10.7284/102188
title: Multiplexed data collected during research cruise AT15-65 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717562.v1
title: Additional file 1: of Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

description: Table S1. Samples and clinical information for patients included in this study. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7717553
title: Additional file 7: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S5. Hormone signaling networks. A. ABA, auxin, and ethylene network for V. riparia root. B. ABA, auxin, and ethylene network for V. riparia shoot. 5C. ABA, cytokinin, and circadian rhythm network for V. riparia root. D. ABA, cytokinin, and circadian rhythm network for V. riparia shoot. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7717556
title: Additional file 8: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S6. RPKM expression fold change (FC log2) of reactive oxygen species scavenging enzymes in water deficit (WD) relative to well-watered organ (C) for root and shoot. Enzymes are noted as superoxide dismutase (SOD), glutathione reductase (GR), glutathione peroxidase (GPX), catalase (CAT), and ascorbate peroxidase (APX). Differentially expressed genes (DEG) at q-value
DOI: 10.6084/m9.figshare.7717556.v1
title: Additional file 8: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S6. RPKM expression fold change (FC log2) of reactive oxygen species scavenging enzymes in water deficit (WD) relative to well-watered organ (C) for root and shoot. Enzymes are noted as superoxide dismutase (SOD), glutathione reductase (GR), glutathione peroxidase (GPX), catalase (CAT), and ascorbate peroxidase (APX). Differentially expressed genes (DEG) at q-value
DOI: 10.7284/102189
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT15-65 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717553.v1
title: Additional file 7: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S5. Hormone signaling networks. A. ABA, auxin, and ethylene network for V. riparia root. B. ABA, auxin, and ethylene network for V. riparia shoot. 5C. ABA, cytokinin, and circadian rhythm network for V. riparia root. D. ABA, cytokinin, and circadian rhythm network for V. riparia shoot. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7717544
title: Additional file 4: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S4. Differentially expressed genes in water defict shoot (WD shoot) and well-watered shoot (C shoot). Values are normalized RPKM for each treatment, fold change (FC) and test statistic and q-value. Genes highlighted in gray were up-regulated in WD shoot relative to C shoot. Genes in bold were differentially express in common in WD root and WD shoot relative to their respective C tissue. (XLSX 673 kb)
DOI: 10.7284/102201
title: Multiplexed data collected during research cruise AT15-66 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717541
title: Additional file 3: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S3. Differentially expressed genes in water defict root (WD root) and well-watered root (C root). Values are normalized RPKM for each treatment, fold change (FC) and test statistic and q-value. Genes highlighted in gray were up-regulated in WD root relative to C root. Genes in bold were differentially express in common in WD root and WD shoot relative to their respective C tissue. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.7717535
title: Additional file 1: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S1. RT-PCR candidate gene information. Candidate gene name, Unique ID, forward (F) and reverse (R) primer sequences, optimal primer concentrations (nM), amplification efficiency (%), and correlation coefficient for fold change of RT-PCR and RNAseq expression values (R2) of each gene in root and shoot. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7717538
title: Additional file 2: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S2. Root and shoot water and dry matter content. Mean % Water content (WC), hydration value (HV) and dry matter content (DMC) of grapevine tissues. Two-way ANOVA significance noted by: y = main effect of Day of Treatment; z = main effect of Water Status Treatment; yz = significant main effects of water status and day at p ≤ 0.05. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7717538.v1
title: Additional file 2: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S2. Root and shoot water and dry matter content. Mean % Water content (WC), hydration value (HV) and dry matter content (DMC) of grapevine tissues. Two-way ANOVA significance noted by: y = main effect of Day of Treatment; z = main effect of Water Status Treatment; yz = significant main effects of water status and day at p ≤ 0.05. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7717541.v1
title: Additional file 3: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S3. Differentially expressed genes in water defict root (WD root) and well-watered root (C root). Values are normalized RPKM for each treatment, fold change (FC) and test statistic and q-value. Genes highlighted in gray were up-regulated in WD root relative to C root. Genes in bold were differentially express in common in WD root and WD shoot relative to their respective C tissue. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.7717544.v1
title: Additional file 4: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S4. Differentially expressed genes in water defict shoot (WD shoot) and well-watered shoot (C shoot). Values are normalized RPKM for each treatment, fold change (FC) and test statistic and q-value. Genes highlighted in gray were up-regulated in WD shoot relative to C shoot. Genes in bold were differentially express in common in WD root and WD shoot relative to their respective C tissue. (XLSX 673 kb)
DOI: 10.7284/102202
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT15-66 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717535.v1
title: Additional file 1: of Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)

description: Table S1. RT-PCR candidate gene information. Candidate gene name, Unique ID, forward (F) and reverse (R) primer sequences, optimal primer concentrations (nM), amplification efficiency (%), and correlation coefficient for fold change of RT-PCR and RNAseq expression values (R2) of each gene in root and shoot. (XLSX 10 kb)
DOI: 10.7284/102203
title: Multiplexed data collected during research cruise AT15-67 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102205
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT15-67 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102204
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT15-67 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102206
title: Multiplexed data collected during research cruise AT15-68 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7717484
title: Additional file 2: of Large tsunamis reset growth of massive corals

description: Table S1. Fault models proposed by Nakamura (2009) and Imamura et al. (2001). (XLSX 9 kb)