cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15474784
title: Software Quality Indicators: extraction, categorisation and recommendations from canonical sources

description: Extraction, categorisation and recommendations of research software quality indicators from seven canonical source. This work began at the BioHackathon 2024 (BH24) as Project #5.

Over 300 indicators from seven sources were extracted. In follow on conference calls after the BH24 refining the indicators took place - for example, deciding on which ones should be kept, maybe should be considered and which ones discarded.  Discarding indicators was informed by duplicate indicators and those that advocated a particular philosophy that might not have being universally recognised as necessary for quality research software. We also highlighted the difficulty level in implemented the indicators - i.e. in how much effort was required (easy, possible, hard) in ascertaining whether software, a service or project governance satisfied a particular indicator.

This is made available to allow others to use this as a starting point for their own project considerations of which software quality indicators to include and/or take into account.

There are current gaps around green software indicators and those in the Reusable part of the FAIR (Findable, Accessible, Interoperable and Reusable) acronym.

This exercise did not define new indicators, it set out to categorise existing indicators from various canonical sources (both in the research software space and in the wider software engineering space).

You can see the slide about progress at the BH24 and further work has been undertake as part of the ELIXIR Tools Platform WP3 (Software Best Practices group + it was open to those who attended the BH24 Project #5) which is part of the ELIXIR Scientific Programme of Work 2024-2028.

Some individuals who took part were funded by the EOSC EVERSE and ELIXIR STEERS projects.

All indicators have been categorised apart from those in the 'X - uncategorised' super group. Definitions have been double checked against the canonical sources.
DOI: 10.5281/zenodo.14834246
title: Software Quality Indicators: extraction, categorisation and recommendations from canonical sources

description: Extraction, categorisation and recommendations of research software quality indicators from seven canonical source. This work began at the BioHackathon 2024 (BH24) as Project #5.

Over 300 indicators from seven sources were extracted. In follow on calls after the BH24 can carried on refining the indicators - and deciding on which ones should be kept, maybe kept and discarded; this was informed by duplicate indicators and those that advocated a particular philosophy that might not have being universally recognised as necessary for quality research software. We also highlighted the difficulty level in implemented the indicators - i.e. in how much effort was required (easy, possible, hard) in ascertaining whether software, a service or project governance satisfied a particular indicator.

This is made available to allow others to use this as a starting point for their own project considerations of which software quality indicators to include and/or take into account.

There are current gaps around green software indicators and the FAIR supergroup categorisation are not all present.

This exercise did not define new indicators, it set out to categorise existing indicators from various canonical sources (both in the research software space and in the wider software engineering space).

You can see the slide about progress at the BH24 and further work has been undertake as part of the ELIXIR Tools Platform WP3 (Software Best Practices group + it was open to those who attended the BH24 Project #5) which is part of the ELIXIR Scientific Programme of Work 2024-2028.

Some individuals who took part were funded by the EOSC EVERSE and ELIXIR STEERS projects.

This is currently a work in progress so not all indicators have been categorised and there maybe definitions may be paraphrased rather than verbatim.
DOI: 10.5281/zenodo.18768816
title: CRK nucleotide sequences extracted from 69 Arabidopsis thaliana ecotypes and phylogenetic tree

description: We used the nucleotide sequences of 40 Cysteine-Rich Receptor-Like Kinases (CRKs) from A. thaliana Col-0 to search against a panel of 69 A. thaliana ecotypes. In this repository we placed the raw complete sequences extracted and downstream coding-region only nucleotide based phylogenetic tree.

https://www.biorxiv.org/content/10.1101/2025.11.26.690834v1
DOI: 10.15468/dl.nmbycd
title: Occurrence Download

description: A dataset containing 2100019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Geometry POLYGON((-45 21,65 21,65 73,-45 73,-45 21))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Andrenidae, Apidae, Braconidae, Colletidae, Halictidae, Ichneumonidae, Megachilidae, Melittidae, Stenotritidae)",
 "Year 2000-2022"
 ]
}

 The dataset includes 2100019 records from 816 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022905-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/prim-c46-5022
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.5281/zenodo.18768815
title: CRK nucleotide sequences extracted from 69 Arabidopsis thaliana ecotypes and phylogenetic tree

description: We used the nucleotide sequences of 40 Cysteine-Rich Receptor-Like Kinases (CRKs) from A. thaliana Col-0 to search against a panel of 69 A. thaliana ecotypes. In this repository we placed the raw complete sequences extracted and downstream coding-region only nucleotide based phylogenetic tree.

https://www.biorxiv.org/content/10.1101/2025.11.26.690834v1
DOI: 10.25549/prim-c46-5028
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5030
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-6524
title: People's Commune, China, 1974

description: Manufacturing and farming activities at People's Commune including agricultural handtools and machines, boat construction, cattle, chickens, crops, diagrams, exhibit, fields, furniture, geese, hogs, maps, metal machining, rabbit, woodworking. 44 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6527
title: People's Commune, China, 1974

description: Manufacturing and farming activities at People's Commune including agricultural handtools and machines, boat construction, cattle, chickens, crops, diagrams, exhibit, fields, furniture, geese, hogs, maps, metal machining, rabbit, woodworking. 44 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6529
title: People's Commune, China, 1974

description: Manufacturing and farming activities at People's Commune including agricultural handtools and machines, boat construction, cattle, chickens, crops, diagrams, exhibit, fields, furniture, geese, hogs, maps, metal machining, rabbit, woodworking. 44 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6531
title: People's Commune, China, 1974

description: Manufacturing and farming activities at People's Commune including agricultural handtools and machines, boat construction, cattle, chickens, crops, diagrams, exhibit, fields, furniture, geese, hogs, maps, metal machining, rabbit, woodworking. 44 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6380
title: Paupers Co-Op, China, 1974

description: Paupers Co-Op (Hsi Pu Production Brigade of Chien Ming People’s Commune) views including buildings, crops, handprocessing olives, handwashing basins, irrigation ditch, retaining wall, in Hebei province. 9 photographs taken on a visit of hydraulic engineers to China, 1974. Maury Albertson may be the gray-haired man with the glasses case in his breast pocket.
DOI: 10.5281/zenodo.18751647
title: Calibration model for FY-4A PWV based on different GNSS station network
DOI: 10.25549/prim-c46-5091
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.5281/zenodo.18751646
title: Calibration model for FY-4A PWV based on different GNSS station network
DOI: 10.25549/prim-c46-5092
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5097
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.15468/dl.3qsrjz
title: Occurrence Download

description: A dataset containing 3178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sida acuta",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3178 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009463-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/prim-c46-5099
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5102
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.15468/dl.u4crq4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Armenia",
 "TaxonKey is Russula sanguinea"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009466-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/prim-c46-6272
title: Tea brigade, China, 1974

description: Agricultural fields for Tea brigade and an interior image of a processing room. 5 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6104
title: Museum art, China, 1974

description: Objects in a museum including archaeological artifacts, art, bowls, burial site, carvings, porcelain figurines, jewelry, scientific instrument, scrimshaw, pottery, stoneware, vase. 28 photographs taken on a visit of hydraulic engineers to China, 1974.
DOI: 10.25549/prim-c46-6266
title: Shanghai technology exhibit, China, 1974

description: Exhibit of technology including automobiles, bulldozer, calculators, ceramics, couplers, farming and construction equipment, looms, machining bits, milling machine, model ships, rods, ship building, textiles, tractors, trucks, turbine. 55 photographs taken on a visit of hydraulic engineers to China, 1974. Maury Albertson may be the gray-haired man with the glasses case in his breast pocket.
DOI: 10.25549/prim-c46-4981
title: Carr Liang letters to his aunt and to James and Sarah Daily, 1940-1942

description: Carr Liang was a student or colleague of James W. Daily, engineering professor at CalTech. He received his masters degree in Mechanical Englineering in 1939. Sally (Sarah) was James' wife. Most of the other people he mentions in his letters are CalTech colleagues. Wen-hsin Wang was Carr Liang's aunt. The letters chronicle his trip back to and conditions in wartime China.
DOI: 10.25549/prim-c46-4992
title: Carr Liang letters to his aunt and to James and Sarah Daily, 1940-1942

description: Carr Liang was a student or colleague of James W. Daily, engineering professor at CalTech. He received his masters degree in Mechanical Englineering in 1939. Sally (Sarah) was James' wife. Most of the other people he mentions in his letters are CalTech colleagues. Wen-hsin Wang was Carr Liang's aunt. The letters chronicle his trip back to and conditions in wartime China.
DOI: 10.25549/prim-c46-5033
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.15468/dl.ypfepj
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Gaillardia aestivalis",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 203 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009467-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/prim-c46-5036
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5037
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5041
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.15468/dl.e28p2f
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Armenia",
 "TaxonKey is Byssomerulius corium"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009468-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/prim-c46-5043
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5109
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5124
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5130
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5135
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5136
title: Visit to China, May-June 1979, for Lectures at the East China College of Hydraulic Engineering

description: This travel diary records a return visit to China for hydraulic engineering professor James Daily in which he and his wife Sarah pass through Hong Kong, Guangzhou and Shanghai before arriving at Nanjing, where he lectured at the East China College of Hydraulic Engineering.
DOI: 10.25549/prim-c46-5251
title: One Month in the People's Republic of China, August-September 1974 : "Kowloon to Kwangchow"

description: Chapter in an unpublished typescript of a book written by James W. Daily about a visit to China of a delegation of mostly American hydraulic engineers
DOI: 10.25549/prim-c46-5255
title: One Month in the People's Republic of China, August-September 1974 : "Kowloon to Kwangchow"

description: Chapter in an unpublished typescript of a book written by James W. Daily about a visit to China of a delegation of mostly American hydraulic engineers
DOI: 10.15468/dl.rj7fz9
title: Occurrence Download

description: A dataset containing 13353198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "TaxonKey is one of (Coleoptera)",
 "TaxonomicStatus is one of (Accepted, Synonym)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than 1980",
 "CoordinateUncertaintyInMeters is less than or equal to 9275"
 ]
}

 The dataset includes 13353198 records from 3332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009443-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/k1p-060-ak6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/45y-fna-ha8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qms-qyp-6vh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5a9-qc8-lbf
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q36-yrw-n0p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lex-b1k-k3b
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pn0-wyv-7h0
title: Carthaginites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zg5-3a3-cxw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hq-pkd-4jb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zed-tcb-42y
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0bk-wwk-v11
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qq7-bvp-gqt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gn6-vp0-qkm
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xjg-w0z-49w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hnd-c31-gby
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zzg-s8p-zb8
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.kbajhq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorites orbiculus",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019933-250811113504898/datasets/export for details.