cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14887985
title: PainMotion: Multimodal Biosignal Datasets from Upper-arm DOMS vs Musculoskeletal Disorders Pain during Industrial Tasks

description: This dataset for musculoskeletal pain research contains 6 h and 4 min of biosignals acquired from 17 healthy participants with delayed-onset muscle soreness (DOMS) and 1 h 6 min from 6 participants with shoulder musculoskeletal disorders (MSDs), performing industrial tasks, where certain movements trigger musculoskeletal pain in the shoulder/upper arm.

In each trial, several biosignals were recorded:



Electrocardiogram (ECG), sampled at 1259.26 Hz, using the Trigno EKG Biofeedback Sensor (Delsys Incorporated);

Surface electromyography (sEMG) from the sore upper-arm muscles biceps brachii, deltoid anterior, deltoid medius, and deltoid posterior, sampled at 2148.15 Hz, using the Trigno Avanti (Delsys Incorporated);

Inertial data from the upper limbs, sampled at 60 Hz, using the Xsens MTw Awinda + Xsens MVN Analyze (Movella Inc.);

Participants’ self-reported pain level, which was defined as binary (0 - no pain, 1 - pain; 2 - samples to discard), sampled at 100 Hz.


 

Database structure:



Protocol: step-by-step description of the acquisition protocol.

Code: Arduino file to acquire the labels (labelling_buttons.ino), Jupyter Notebook files containing the base code to read and compute physiological features (feature_extraction_ECG.ipynb, feature_extraction_EMG.ipynb, feature_extraction_IMU.ipynb), and Jupyter Notebook file to perform a statistical analysis (analysis_features.ipynb).

DOMS dataset.zip: includes data (biosignals and pain labels acquired in each trial for each participant, stored in .csv and .xlsx files) and metadata (participants' anthropometric data, cardiac conditions, anti-inflammatories, caffeine, alcohol and nicotine intake, and exercise habits);

MSD dataset.zip: includes data (biosignals, pain labels and task labels acquired in each trial for each participant, stored in .csv and .xlsx files) and metadata (participants' anthropometric data, cardiac conditions, anti-inflammatories, caffeine, alcohol and nicotine intake, exercise habits, musculoskeletal disorder description, and physiotherapy info).


 

This dataset may contribute to the development and testing of new pain detection algorithms and analysis of the underlying mechanisms.





For any questions, please contact Diogo R. Martins at diogo-martins-9@live.com.pt, Sara M. Cerqueira at saracerqueira1996@gmail.com or Cristina P. Santos at cristina@dei.uminho.pt.
DOI: 10.15468/dl.bu9mhm
title: Occurrence Download

description: A dataset containing 1144019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasioglossum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)"
 ]
}

 The dataset includes 1144019 records from 703 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040134-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1651250954
title: In-situ tensile microtomography of crack nucleation and meso-scale deformation mechanics in Ni-based alloy Inconel 718 (SAME AS IH-MA-461)

description: Inconel 718 is an alloy used in critical components in the aero-engine industry and energy sector that has high performances characteristics at high temperature
and load. Digital Volume Correlation (DVC) will be employed as a primary analysis tool, using carbide precipitates in the microstructure as "trackers", to compute
the macroscopic strain tensor and elucidate the meso-scale deformation mechanics, and particularly cracks that nucleate within the precipitates themselves.
DOI: 10.15468/dl.c954bg
title: Occurrence Download

description: A dataset containing 1113598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyanocitta cristata (Linnaeus, 1758)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 1989",
 "Year is less than or equal to 2009",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False",
 "DecimalLatitude is greater than or equal to 24.5",
 "DecimalLatitude is less than or equal to 49.5",
 "DecimalLongitude is greater than or equal to -125.0",
 "DecimalLongitude is less than or equal to -66.5"
 ]
}

 The dataset includes 1113598 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239438-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xaneen
title: Occurrence Download

description: A dataset containing 417208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lonicera L."
 ]
}

 The dataset includes 417208 records from 679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138776-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471179237
title: Berlin-Karlsruhe - Macromolecular Crystallography BAG - Structural Biology of light-responsive, signal-transducing and metallo- proteins

description: In this project, we aim to investigate the structure-function relationships of various soluble and membrane proteins involved in signal transduction and/or energy conversion. We are analysing different hydrogen-converting oxygen-tolerant [NiFe] hydrogenases under specific environmental conditions. In our work on G protein-coupled receptors (e.g., endothelin receptors, melanocortin receptors or rhodopsin), we study the structures bound to agonists and antagonists as well as in complex with their cognate G proteins to understand the mechanism of signal transduction. We also investigate light-regulated proteins such as phytochromes and DNA photolyases. Here we focus on the detailed analysis of the different intermediates of their photocycle and the understanding of their signalling mechanisms. Other areas of research include microbial rhodopsins, ion pumps and guanylate cyclase-activating proteins.
DOI: 10.15151/esrf-es-1561473130
title: Structural biology at Umeå University

description: The BAG consists out of 7 groups that are heavily involved in macromolecular crystallography, as well as other structural biology techniques, at Umeå University, Sweden. We work on a diverse set of biological questions, ranging from understanding the structure and function of Gram-positive Type 4 Secretion Systems, mobile genetic elements in Staphylococcus aureus, DNA and RNA polymerases, effector protein in Type 6 Secretion Systems and transcriptional regulators.
DOI: 10.15468/dl.pkjs5m
title: Occurrence Download

description: A dataset containing 2672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum zonatum (Brid.) Kindb., Dolichopoda geniculata (Costa, 1860), Dolichosoma lineare (Rossi))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2672 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239476-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1561458033
title: Quantitative analysis of the phase transformation kinetics during reactive sintering in refractory innovative ceramics. An in situ high temp

description: We propose to study in situ at the quantitative level the spinel and mullite crystallization processes inside bulk refractory ceramics and the
influence of the kind of alumina particles used on their reactivity under solid state at high temperature.
DOI: 10.15468/dl.kmcv7q
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonella caelesyriaca Boiss."
 ]
}

 The dataset includes 246 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010585-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1561467116
title: Unraveling the 3D structural organization of Fireworm chaetae fibers: from structure to function

description: Fireworms are a type of marine bristleworm that have long, slender bodies that can grow up to 35 centimeters in length, and they are covered in many small, hair-like structures called chaetae. These chaetae are specialized bristles that are involved in locomotion, defense, and other functions. These bristles are composed of a mineralized structure that is formed through the process of biomineralization. Not much research has been performed to date on the structure and mineralization of the chaetae. We have preliminary revealed that the mineral is organized in a beautiful 3D hexagonal packing along the fibers and that other than calcite various unknown mineral phases exist. Herein we propose to study the 3D structural organization along the fiber via SAXS/WAX on the microdiffrcation beamline ID13 as well as the mineral composition lattice strains in the mineral on ID22. In situ kinetics of the strain relaxation and crystallization of the amorphous phase will also be carried out.
DOI: 10.15151/esrf-es-1637818565
title: Fast Access at Beamline ID19: Microtomography ("resubmission")

description: The experimental programme at beamline ID19 underwent tremendous changes in the more than 20 years of operation: starting from Bragg diffraction
topography (already with a substantial contribution of in situ experiments), the beamline pioneered hard X-ray phase contrast microtomography in routine user
application, later coupled with polychromatic illumination to exploit hard X-rays up to 250 keV as well as short exposure times. Here, we propose an access route
for routine microtomography which is fast, i.e. can be made available on short terms, and requires minimal overheads for the beamline staff. The basic idea is to
deploy the robotic sample changer of the beamline which has already proven to be a useful tool during the pandemic where users remotely scanned and changed
samples. It can be easily installed, with samples pre-mounted from the users loaded and made available in non-used evening and night shifts in a remote manner
exactly like it was done during the pandemic.
DOI: 10.15468/dl.7zrs9j
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation)",
 "TaxonKey is Naemorhedus goral (Hardwicke, 1825)"
 ]
}

 The dataset includes 186 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013949-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1634393946
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, the National Research Council and Hospital research centres in Italy. The laboratories take
advantage of single crystal and small angle X-ray diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for
the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or
indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes,
such as crystal growth, or aim at characterising macromolecules with potential biotechnological applications.
DOI: 10.15151/esrf-es-1645840491
title: Southampton, Bristol, Cardiff, Exeter, KCL, UCL Royal Free Block Allocation Group (BAG)

description: This BAG coordinates activities of groups from the South-West of the UK. The focus of the bag is on projects in Immunology, enzymology, and transcriptional regulation. A particular strength are the macromolecular complexes that several of the groups target. The activities in rational protein design (Bristol) and in cancer immunology and enzyme mechanism (Southampton) are particular highlights, with high profile publication. Cardiff has joined the bag as a new member in 2022. Several bag members are active in using facilities such as icOS and ID29 serial as pointed out in the proposal. NB although ID29 is a separate proposal at present, we have a new member with the University of Essex, expected to join this bag when ID29 is part of the bag proposal.
DOI: 10.15468/dl.nzjhrh
title: Occurrence Download

description: A dataset containing 4319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum flexicaule (Schwägr.) Hampe)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 4319 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239465-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1542513097
title: Southampton, Bristol, Cardiff, Exeter, KCL, UCL Royal Free Block Allocation Group (BAG)

description: This BAG coordinates activities of groups from the South-West of the UK. The focus of the bag is on projects in Immunology, enzymology, and transcriptional regulation. A particular strength are the macromolecular complexes that several of the groups target. The activities in rational protein design (Bristol) and in cancer immunology and enzyme mechanism (Southampton) are particular highlights, with high profile publication. Cardiff has joined the bag as a new member in 2022. Several bag members are active in using facilities such as icOS and ID29 serial as pointed out in the proposal. NB although ID29 is a separate proposal at present, we have a new member with the University of Essex, expected to join this bag when ID29 is part of the bag proposal.
DOI: 10.15468/dl.efjvp8
title: Occurrence Download

description: A dataset containing 66463 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Fish Databank"
 ]
}

 The dataset includes 66463 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013912-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471037775
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2498 proposal and can be grouped into different topics as follows: host-pathogen interaction, new therapy targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, cryo-EM, SAXS and NMR), together with other biophysical and biochemical studies, and very recently the use of AI, with the aim to fully understand the complexity of the biological macromolecular systems under study.
DOI: 10.15468/dl.gmpnj8
title: Occurrence Download

description: A dataset containing 2725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum gracile (Mitt.) Kuntze)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2725 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239468-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471204053
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, the National Research Council and Hospital research centres in Italy. The laboratories take
advantage of single crystal and small angle X-ray diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for
the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or
indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes,
such as crystal growth, or aim at characterising macromolecules with potential biotechnological applications.
DOI: 10.15151/esrf-es-1634419936
title: iNEXT Discovery-Instruct ESRF-ERIC; Structural biology for translational research and discovery.

description: The aim of this proposal is to provide user access to automated protein-to-structure and fragment screening pipelines based on the combination of EMBL HTX lab services and CrystalDirect technology and automated data collection at ESRF’s MX beamlines. Access modalities will include 1) Online-Crystallography (Protein-to-Structure pipeline) 2) Large-Scale ligand and Fragment Screening and 3) new Plate-to-beam data collection modalities enabled by the integration of CrystalDirect at MASSIF1. User access to these modalities will require competitive application and peer-review through the E.C. funded iNEXT Discovery and Instruct-ERIC consortia. Moreover, new approaches for high density ligand screening will be implemented and the experimental opportunities enabled by the Integration of CrystalDirect at the MASSIF-1 station will be further developed. This work will be carried out in the context of international collaborative projects.
DOI: 10.15468/dl.5bubma
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telitoxicum peruvianum Moldenke"
 ]
}

 The dataset includes 50 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010605-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1560209173
title: Mercury speciation in herbaria as a tool for collections' restoration and health hazard mitigation

description: Botanical collections (herbaria) are unique archives for botanical research, which help preserve plant genetic resources and biodiversity. Mercuric chloride (HgCl2) was widely employed to botanical specimens to prevent samples’ degradation [1]. Over time, HgCl2 decomposes to Hg0, which readily vaporizes, becoming a serious occupational health hazard for the workers and visitors of worldwide collections [2-5]. 
The present project aims at investigating Hg-contaminated botanical collections of the Erbario Centrale Italiano of the Natural History Museum of the University of Firenze (Italy) by non-destructive techniques, such High Resolution X-ray Absorption Near Edge Spectroscopy (HR-XANES). The proposed experiment will reveal the Hg speciation in the botanical samples, the paper supports, and the wooden storage cabinets, offering specific information to set-up restoration methods, combining mitigation of the potential Hg exposures to humans with preservation of sample integrity.
DOI: 10.15151/esrf-es-1468222073
title: High-Energy Synchrotron Studies on Asteroid Samples Provided by Return Missions

description: Our project is embedded within the two sample return missions from near-Earth C-type asteroids ever undertaken so far in international space science, Hayabusa2 (JAXA) and OSIRIS-REx (NASA).

The proposers of this Long Term Project are members of the Initial Analysis Team associated with JAXA’s Hayabusa2 mission and the goal of this proposal is to 1) establish the necessary experimental and data-analysis protocols for high-energy quantitative scanning 2D/3D X-ray fluorescence (XRF) and X-ray diffraction (XRD) micro-/nano-analysis of unique extra-terrestrial samples, and 2) to apply these methods to analyze unique sample materials originating from both carbonaceous asteroids which are remnants from the early Solar System, preserving primitive materials since their formation approximately 4.6 billion years ago.