cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc20bskq
title: CCDC 1857413: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bslr
title: CCDC 1857414: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bsms
title: CCDC 1857415: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bsnt
title: CCDC 1857416: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bspv
title: CCDC 1857417: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bsqw
title: CCDC 1857418: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bsrx
title: CCDC 1857419: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bssy
title: CCDC 1857420: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20bstz
title: CCDC 1857421: Experimental Crystal Structure Determination

description: Related Article: Tener F. Jenkins, David H. Woen, Luke N. Mohanam, Joseph W. Ziller, Filipp Furche, William J. Evans|2018|Organometallics|37|3863|doi:10.1021/acs.organomet.8b00557
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20khwz
title: CCDC 1863871: Experimental Crystal Structure Determination

description: Related Article: Hosein Tafazolian, Charlene Tsay, Richard R. Schrock, Peter Müller|2018|Organometallics|37|4024|doi:10.1021/acs.organomet.8b00614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/4e1745ea523325bf35bedc88e7a9b4d0
title: Ecological Survey of Central Arizona: a survey of key ecological indicators in parcels of residential areas in the greater Phoenix metropolitan area, ongoing since 2010 (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-cap&identifier=653&revision=2

The abstract below was extracted from the Level 0 data package and is included for context:


  The Ecological Survey of Central Arizona (ESCA) is an extensive field
  survey and integrated inventory designed to capture key ecological
  indicators of the CAP LTER study area consisting of the urbanized,
  suburbanized, and agricultural areas of metropolitan Phoenix, and the
  surrounding Sonoran desert. The survey is conducted every five years
  at approximately 200 sample plots (30m x 30m) that were located
  randomly using a tessellation-stratified dual-density sampling design.
  Study plots cover habitats throughout the CAP LTER study area ranging
  from native Sonoran desert sites to residential yards to an airport
  tarmac.



  In 2010, the survey was expanded to include an assessment of
  residential parcels overlapping the survey plot at sites in
  residential areas. Many of the same variables that are measured in the
  30m x 30m survey plot are measured in the parcel, including an
  inventory of perennial plants, and the biovolume of trees. In
  addition, a detailed assessment of characteristics of the parcel is
  performed.



  Investigators interested in data from the broader Ecological Survey of
  Central Arizona that includes all survey plots should should search
  the data catalog for 'ecological survey of central arizona' or 'survey
  200' to locate those and other data related to the CAP LTER's ESCA.
DOI: 10.18112/openneuro.ds001559.v1.0.1
title: Formulaic language
DOI: 10.5281/zenodo.1467018
title: Sardinia_Rhs_Miroc-Esm-Chem_Rcp8P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467019
title: Sardinia_Rhs_Miroc-Esm-Chem_Rcp8P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5517/ccdc.csd.cc20khx0
title: CCDC 1863872: Experimental Crystal Structure Determination

description: Related Article: Hosein Tafazolian, Charlene Tsay, Richard R. Schrock, Peter Müller|2018|Organometallics|37|4024|doi:10.1021/acs.organomet.8b00614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20khy1
title: CCDC 1863873: Experimental Crystal Structure Determination

description: Related Article: Hosein Tafazolian, Charlene Tsay, Richard R. Schrock, Peter Müller|2018|Organometallics|37|4024|doi:10.1021/acs.organomet.8b00614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20q13x
title: CCDC 1868218: Experimental Crystal Structure Determination

description: Related Article: Stefano Parisotto, Annamaria Deagostino|2018|Org.Lett.|20|6891|doi:10.1021/acs.orglett.8b03026
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1467020
title: Sardinia_Rlds_Miroc-Esm-Chem_Historical_1961-2005_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467021
title: Sardinia_Rlds_Miroc-Esm-Chem_Historical_1961-2005_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467022
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp2P6_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467023
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp2P6_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.25773/7fva-d594
title: Summary Tables: 2018 Caroline County, Virginia Shoreline Inventory
DOI: 10.5281/zenodo.1320754
title: Data And Results For Manuscript: "Imaging And Functional Characterization Of Crop Root Systems Using Spectroscopic Electrical Impedance Measurements"

description: This package contains measured raw EIT data, electrical imaging results, spectral results from the Debye decomposition, and the Python scripts used to generate the plots in the manuscript titled:<br>
<br>
Imaging and functional characterization of crop root systems using spectroscopic electrical impedance measurement
DOI: 10.5281/zenodo.1320755
title: Data And Results For Manuscript: "Imaging And Functional Characterization Of Crop Root Systems Using Spectroscopic Electrical Impedance Measurements"

description: This package contains measured raw EIT data, electrical imaging results, spectral results from the Debye decomposition, and the Python scripts used to generate the plots in the manuscript titled:<br>
<br>
Imaging and functional characterization of crop root systems using spectroscopic electrical impedance measurement
DOI: 10.5281/zenodo.1467026
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp4P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467027
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp4P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467028
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp6P0_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467029
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp6P0_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5517/ccdc.csd.cc205108
title: CCDC 1851878: Experimental Crystal Structure Determination

description: Related Article: Benjamin J. Frogley, Anthony F. Hill|2018|Chem.Commun.|54|12373|doi:10.1039/C8CC07166G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1463939
title: A Dataset Of Multiple Types Of Linux Kernel Patches

description: We share a dataset of a nine-year history of patches (666,550 patches produced from December 2008 to December 2017) and related discussion recorded by the LKML project on the Linux kernel patchwork. To better help future studies, we analyzed the review results of these patches, and marked three types: accepted patches, rejected patches, and patches that are rejected because of the communication problem.
DOI: 10.5281/zenodo.1463940
title: A Dataset Of Multiple Types Of Linux Kernel Patches

description: We share a dataset of a nine-year history of patches (666,550 patches produced from December 2008 to December 2017) and related discussion recorded by the LKML project on the Linux kernel patchwork. To better help future studies, we analyzed the review results of these patches, and marked three types: accepted patches, rejected patches, and patches that are rejected because of the communication problem.
DOI: 10.5281/zenodo.1467025
title: Partially Methylated Domains Are Hypervariable In Breast Cancer And Fuel Widespread Cpg Island Hypermethylation

description: This dataset contains supplemental tables and tracks for the study entitled: "Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation".


	Files
	
		PMDs_CGIs.zip
		
			The included files contain
			Genome positions of detected PMDs with their mean methylation (weighted mean, see Methods)
			Genome positions of CpG islands with their mean methylation (weighted mean)
			The "Brinkman" directory contains files from breast cancer data produced in this study
			The "normals" directory contains files from normal tissues (external data) analyzed in this study
			The "tumors" directory contains files from tumors (external data) analyzed in this study
			All genome positions are based on GRCh37/hg19 
			All files are TAB-delimited text files (.tsv)
		
		
		DNAme_bigwigs.zip
		
			The included files are BIGWIG files (http://genome.ucsc.edu/goldenPath/help/bigWig.html) for viewing the DNA methylation profiles in a genome browser such as UCSC (http://genome.ucsc.edu). Each file represents a whole-Genome Bisulfite Sequencing (WGBS) DNA methylation profile from one tumor used in this study. The used genome build was GRCh37/hg19. For every CpG with a coverage of at least 4 reads, the DNA methylation value (range: 0-1) is included.
		
		
	
	
	Methods
	
		Detection of partially methylated domains (PMDs) in all whole-genome bisulfite sequencing (WGBS) methylation profiles throughout this study was done using the MethylSeekR package for R (1). Before PMD calling, CpGs overlapping common SNPs (dbSNP build 137) were removed. The alpha distribution (1) was used to determine whether PMDs were present at all, along with visual inspection of WGBS profiles. After PMD calling, the resulting PMDs were further filtered by removing regions overlapping with centromers (undetermined sequence content).
		Mean methylation values from WGBS inside CGIs were calculated using the ‘weighted methylation level’ (2).
		Mean methylation values from WGBS inside PMDs were calculated using the ‘weighted methylation level’ (2). Calculation of mean methylation within PMDs involved removing all CpGs overlapping with CpG island(-shores) and promoters, as the high CpG densities within these elements yield unbalanced mean methylation values, not representative of PMD methylation. 
	
	
	References
	
		(1) Burger, L., Gaidatzis, D., Schübeler, D. & Stadler, M. B. Identification of active regulatory regions from DNA methylation data. Nucleic Acids Research 41, (2013).
		(2) Schultz, M. D., Schmitz, R. J. & Ecker, J. R. ’Leveling’ the playing field for analyses of single-base resolution DNA methylomes. Trends in Genetics 28, 583–585 (2012).
DOI: 10.5281/zenodo.1467030
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp8P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467031
title: Sardinia_Rlds_Miroc-Esm-Chem_Rcp8P5_2006-2099_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467032
title: Sardinia_Rsds_Miroc-Esm-Chem_Historical_1961-2005_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5281/zenodo.1467033
title: Sardinia_Rsds_Miroc-Esm-Chem_Historical_1961-2005_Daily.Nc4

description: ISIMIP-2a climate data cutout provided for Sardinia in the framework of SIM4NEXUS
DOI: 10.5517/ccdc.csd.cc205f2q
title: CCDC 1852252: Experimental Crystal Structure Determination

description: Related Article: Patrícia A. A. M. Vaz, João Rocha, Artur M. S. Silva, Samuel Guieu|2018|New J.Chem.|42|18166|doi:10.1039/C8NJ03228A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc205f3r
title: CCDC 1852253: Experimental Crystal Structure Determination

description: Related Article: Patrícia A. A. M. Vaz, João Rocha, Artur M. S. Silva, Samuel Guieu|2018|New J.Chem.|42|18166|doi:10.1039/C8NJ03228A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc205f4s
title: CCDC 1852254: Experimental Crystal Structure Determination

description: Related Article: Patrícia A. A. M. Vaz, João Rocha, Artur M. S. Silva, Samuel Guieu|2018|New J.Chem.|42|18166|doi:10.1039/C8NJ03228A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc205f5t
title: CCDC 1852255: Experimental Crystal Structure Determination

description: Related Article: Patrícia A. A. M. Vaz, João Rocha, Artur M. S. Silva, Samuel Guieu|2018|New J.Chem.|42|18166|doi:10.1039/C8NJ03228A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1418899
title: Meshography Workshop

description: Leveraging the meshing of frog gastrocnemius muscle from digital photography using artificial neural networks.

This data collection supports the finding in our paper submitted to the INTERNATIONAL JOURNAL OF NUMERICAL METHODS IN BIOMEDICAL ENGINEERING", on Oct.20,2018.

There are two folders (left and right) containing 15 images each, processed for edge detection of the left and right object contours.

There are also some Matlab scripts and functions, for data preparation and training of a Bayesian backpropagation neural network.

The script (kod2.m) is associated with the polynomial fitting procedure to the contours, and it utilized the function (fiterror.m) in the process.

The file (polinomtablo4th.mat) contains the output of the fitting procedure, and is used by the neural networking script (plotneur4th.m).

Finally, the unit cylinder mesh are processed through the network, to produce the 1767 node, 1440 hexahedral-type element FEAP mesh (wIplant2), of the muscle shown in (mesh_view2.png).

The codes are based in the MATLAB R15b, image processing and neural network toolboxes.
DOI: 10.5281/zenodo.1418900
title: Meshography Workshop

description: Leveraging the meshing of frog gastrocnemius muscle from digital photography using artificial neural networks.

This data collection supports the finding in our paper submitted to the INTERNATIONAL JOURNAL OF NUMERICAL METHODS IN BIOMEDICAL ENGINEERING", on Oct.20,2018.

There are two folders (left and right) containing 15 images each, processed for edge detection of the left and right object contours.

There are also some Matlab scripts and functions, for data preparation and training of a Bayesian backpropagation neural network.

The script (kod2.m) is associated with the polynomial fitting procedure to the contours, and it utilized the function (fiterror.m) in the process.

The file (polinomtablo4th.mat) contains the output of the fitting procedure, and is used by the neural networking script (plotneur4th.m).

Finally, the unit cylinder mesh are processed through the network, to produce the 1767 node, 1440 hexahedral-type element FEAP mesh (wIplant2), of the muscle shown in (mesh_view2.png).

The codes are based in the MATLAB R15b, image processing and neural network toolboxes.
DOI: 10.5281/zenodo.1464922
title: Molecular Basis For The Increased Affinity Of An Rna Recognition Motif With Re-Engineered Specificity:  A Molecular Dynamics And Enhanced Sampling Simulations Study-Part 7

description: Simulations of the Rbfox*-miR20b and of the Rbfox-mir20b* complexes.