cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10110755.v2
title: Metadata record for: SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific

description: This dataset contains key characteristics about the data described in the Data Descriptor SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10110755.v1
title: Metadata record for: SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific

description: This dataset contains key characteristics about the data described in the Data Descriptor SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10109840
title: Additional file 2 Log Rasch analysis Norwegian Claim Study_2019.docx

description: Log Rasch analysis Norwegian Claim Study_2019
DOI: 10.6084/m9.figshare.10109261
title: Dataset for matching estimation, based on Social Diagnosis, Statistics Poland and Orliki databases.

description: To construct the datasaet, firstly, the Social Diagnosis (SD) data was used – a dataset based on results of a representative, longitudinal study conducted by an interdisciplinary board of academics in 2000-2015 [[i]]. Furthermore, the SD dataset has been combined with two datasets on sports infrastructure: The Statistics Poland (SP), conducted every four years, the latest, from 2014, was used for our analysis [[ii]] and the “Orliki” database, containing information on facilities constructed in 2008–2012 within a publicly-funded programme [[iii]]. The data has been combined by calculation indicators of availability: number of sports facilities of particular types per capita, at the NUTS (Classification of Territorial Units for Statistics) 3 level. <br> 1. Czapiński J, Panek T. Social diagnosis. 2015. Available from: http://www.diagnoza.com/. 2. Statistics Poland. Surveys on sports facilities - results of KFT-OB/a (municipalities), KFT-OB/b (external administrators), KFT-1 (sport clubs) surveys. Warsaw: Statistics Poland. 2015. 3. Biernat E, Piątkowska M, Zembura P, Gołdys A. Problem zarządzania orlikami z perspektywy animatorów z gmin wiejskich i miejskich [Challenges of management of Orlik pitches in the perspective of the animators from municipal and rural communities]. Przeds Zarz. 2017;18(8):429–44. Polish.
DOI: 10.17633/rd.brunel.10109120
title: Grammar tests, Government and pedagogical coercion in England's primary schools - GPS tests

description: These are the Grammar, Punctuation and Spelling tests, from 2013-2019. These tests are compulsory for all primary school children in state-maintained education in England and Wales.
DOI: 10.17633/rd.brunel.10109120.v1
title: Grammar tests, Government and pedagogical coercion in England's primary schools - GPS tests

description: These are the Grammar, Punctuation and Spelling tests, from 2013-2019. These tests are compulsory for all primary school children in state-maintained education in England and Wales.
DOI: 10.6084/m9.figshare.10108706
title: The landscape genetic signature of pollination by trapliners: Evidence from the tropical herb, Heliconia tortuosa

description: <b>TwoGener:</b><br>All files necessary to complete the TwoGener analysis include the TwoGener_ prefix. Files include:<br>1. TwoGener_README.txt.2. TwoGener_Raw_Data.csv3. TwoGener_AMOVA.rmd<br><b>Paternity:</b><br>All files for the paternity analysis implemented in COLONY include the Paternity_ prefix. Files include:<br>1. Paternity_README.txt2. Paternity_OffspringGenotypes.csv3. Paternity_MothersGenotypes.csv4. Paternity_MaternalSibs.csv5. Paternity_MarkerErroRate.csv6. Paternity_ExclusionMaternity.csv7. Paternity_ExclusionMaternalSibs.csv8. Paternity_Selfed_Seeds.csv9. Paternity_Project_Information.txt<br><b>Simulations:</b><br>The R code for the simulations of pollen pool differentiation is provided.<br>1. Simulations.rmd<br><b>Mating System:</b><br>All files for the estimation of outcrossing rates in MLTR include the MatingSystem_ prefix. Files include:<br>1. MatingSystem_README.txt2. MatingSystem_Seeds.txt3. MatingSystem_Mothers_Seeds.txt<br><b>Loci Information:</b><br>Basic information for the 11 microsatellite loci were estimated in CERVUS and are given in:<br>1. Loci_Information.txt2. Loci_Information_Genotypes.txt
DOI: 10.6084/m9.figshare.10109261.v1
title: Dataset for matching estimation, based on Social Diagnosis, Statistics Poland and Orliki databases.

description: To construct the datasaet, firstly, the Social Diagnosis (SD) data was used – a dataset based on results of a representative, longitudinal study conducted by an interdisciplinary board of academics in 2000-2015 [[i]]. Furthermore, the SD dataset has been combined with two datasets on sports infrastructure: The Statistics Poland (SP), conducted every four years, the latest, from 2014, was used for our analysis [[ii]] and the “Orliki” database, containing information on facilities constructed in 2008–2012 within a publicly-funded programme [[iii]]. The data has been combined by calculation indicators of availability: number of sports facilities of particular types per capita, at the NUTS (Classification of Territorial Units for Statistics) 3 level. <br> 1. Czapiński J, Panek T. Social diagnosis. 2015. Available from: http://www.diagnoza.com/. 2. Statistics Poland. Surveys on sports facilities - results of KFT-OB/a (municipalities), KFT-OB/b (external administrators), KFT-1 (sport clubs) surveys. Warsaw: Statistics Poland. 2015. 3. Biernat E, Piątkowska M, Zembura P, Gołdys A. Problem zarządzania orlikami z perspektywy animatorów z gmin wiejskich i miejskich [Challenges of management of Orlik pitches in the perspective of the animators from municipal and rural communities]. Przeds Zarz. 2017;18(8):429–44. Polish.
DOI: 10.6084/m9.figshare.10108703
title: Metadata record for: Species occurrence of ticks in South America, and interactions with biotic and abiotic traits

description: This dataset contains key characteristics about the data described in the Data Descriptor Species occurrence of ticks in South America, and interactions with biotic and abiotic traits. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10109840.v1
title: Additional file 2 Log Rasch analysis Norwegian Claim Study_2019.docx

description: Log Rasch analysis Norwegian Claim Study_2019
DOI: 10.6084/m9.figshare.10106156
title: Source codes from Longitudinal wave propagation in a one-dimensional quasi-periodic waveguide

description: The paper deals with the analysis of wave propagation in a general one-dimensional (1D) non-uniform waveguide featuring multiple modulations of parameters with different, arbitrarily related, spatial periods. The considered quasi-periodic waveguide, in particular, can be viewed as a model of pure periodic structures with imperfections. Effects of such imperfections on the waveguide frequency bandgaps are revealed and described by means of the method of varying amplitudes and the method of direct separation of motions. It is shown that imperfections cannot considerably degrade wave attenuation properties of 1D periodic structures, e.g. reduce widths of their frequency bandgaps. Attenuation levels and frequency bandgaps featured by the quasi-periodic waveguide are studied without imposing any restrictions on the periods of the modulations, e.g. for their ratio to be rational. For the waveguide featuring relatively small modulations with periods that are not close to each other, each of the frequency bandgaps, to the leading order of smallness, is controlled only by one of the modulations. It is shown that introducing additional spatial modulations to a pure periodic structure can enhance its wave attenuation properties, e.g. a relatively low-frequency bandgap can be induced providing vibration attenuation in frequency ranges where damping is less effective.
DOI: 10.6084/m9.figshare.10108703.v2
title: Metadata record for: Species occurrence of ticks in South America, and interactions with biotic and abiotic traits

description: This dataset contains key characteristics about the data described in the Data Descriptor Species occurrence of ticks in South America, and interactions with biotic and abiotic traits. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10108703.v1
title: Metadata record for: Species occurrence of ticks in South America, and interactions with biotic and abiotic traits

description: This dataset contains key characteristics about the data described in the Data Descriptor Species occurrence of ticks in South America, and interactions with biotic and abiotic traits. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10105847
title: The landscape genetic signature of pollination by trapliners: Evidence from the tropical herb, Heliconia tortuosa

description: This folder contains all the data included in The landscape genetic signature of pollination by trapliners: Evidence from the tropical herb, Heliconia tortuosa.
DOI: 10.6084/m9.figshare.10105847.v1
title: The landscape genetic signature of pollination by trapliners: Evidence from the tropical herb, Heliconia tortuosa

description: This folder contains all the data included in The landscape genetic signature of pollination by trapliners: Evidence from the tropical herb, Heliconia tortuosa.
DOI: 10.6084/m9.figshare.10104368
title: References on Amazonia 311019.xlsx

description: This dataset contains a list of references used in a 2019 assessment of the importance of Amazonia for biodiversity and ecosystem services.
DOI: 10.6084/m9.figshare.10101449
title: PA_WES

description: WES sequencing bam file
DOI: 10.6084/m9.figshare.10101407
title: Dataset for: A newly identified photolyase from Arthrospira platensis possesses a unique MTHF binding model

description: Cyclobutane pyrimidine dimers (CPD), as a common DNA damage caused by UV radiation, often lead to disastrous diseases. Here, we identified a photolyase from Arthrospira platensis (designated as Ap-phr), which has been regarded as safe organism for humans for centuries. Ap-phr can efficiently repair CPD lesions in ssDNA and dsDNA in vitro, and the 1.6 Å resolution crystal structure of Ap-phr revealed that it possesses a unique MTHF-binding pattern with high energy transfer efficiency. Our study of Ap-phr highlights its potential use in cosmetic, industrial and aesthetic medicine applications.
DOI: 10.6084/m9.figshare.10101449.v1
title: PA_WES

description: WES sequencing bam file
DOI: 10.6084/m9.figshare.10101371
title: Application of Pharmacogenomics and Bioinformatics to Exemplify the Utility of Human ex vivo Organoculture Models in the Field of Precision Medicine.

description: Study data file sets for Application of Pharmacogenomics and Bioinformatics to Exemplify the Utility of Human ex vivo Organoculture Models in the Field of Precision Medicine.<br>Data sets include:25 donor whole exome vcf files25 donor demographic information xls format25 donor TNFalpha release concentrations (pg/mL) xls format25 donor miRNA normalized intensity results txt format
DOI: 10.6084/m9.figshare.10101407.v1
title: Dataset for: A newly identified photolyase from Arthrospira platensis possesses a unique MTHF binding model

description: Cyclobutane pyrimidine dimers (CPD), as a common DNA damage caused by UV radiation, often lead to disastrous diseases. Here, we identified a photolyase from Arthrospira platensis (designated as Ap-phr), which has been regarded as safe organism for humans for centuries. Ap-phr can efficiently repair CPD lesions in ssDNA and dsDNA in vitro, and the 1.6 Å resolution crystal structure of Ap-phr revealed that it possesses a unique MTHF-binding pattern with high energy transfer efficiency. Our study of Ap-phr highlights its potential use in cosmetic, industrial and aesthetic medicine applications.
DOI: 10.6084/m9.figshare.10099394
title: Reaction time data for CamoGAN experiment 1

description: <b>Column descriptions</b><b><br></b><b>participant_id</b>Participant identifier (1 to 45).<br><b>gan_id</b>Identifier of the GAN the target was extracted from (1 to 10).<br><b>treatment</b>500, 2500, 5000, 7500 and 10000 stand for the number of training iterations GANs were trained for when the target was extracted; F is for the Fourier and A is for the Average control conditions.<br><b>strain</b>The strain that was presented to a participant. 15 strains were extracted from each GAN. Strains with the same identifier, but different GAN origin are independent.<br><b>reaction_time</b>Reaction time of participants in seconds.<br><b>status</b>0 - target was found and clicked on1 - participant clicked, but not on the target2 - timeout (10 seconds)
DOI: 10.6084/m9.figshare.10099358
title: Turpan-Hami Block Early Permian Paleomagnetic data

description: We have conducted a paleomagnetic study on the Early Permian strata in the Turpan-Hami basin, NW China. The first Early Permian paleomagnetic pole for the Turpan-Hami Block was acquired. Accordingly, several quantitative constraints concerning the tectonic evolution of the SW CAOB were also proposed. This manuscript is submitted to JGR: Solid Earth, and we want to upload our demagnetization data here. Readers who want to reanalyze our data should download these data, and then use paleomagnetism.org website to open them. If you have questions or need more relevant data, feel free to contact me (xinzhu2017@gmail.com).
DOI: 10.6084/m9.figshare.10099358.v1
title: Turpan-Hami Block Early Permian Paleomagnetic data

description: We have conducted a paleomagnetic study on the Early Permian strata in the Turpan-Hami basin, NW China. The first Early Permian paleomagnetic pole for the Turpan-Hami Block was acquired. Accordingly, several quantitative constraints concerning the tectonic evolution of the SW CAOB were also proposed. This manuscript is submitted to JGR: Solid Earth, and we want to upload our demagnetization data here. Readers who want to reanalyze our data should download these data, and then use paleomagnetism.org website to open them. If you have questions or need more relevant data, feel free to contact me (xinzhu2017@gmail.com).
DOI: 10.6084/m9.figshare.10096595
title: Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: The dataset contains genotype (tped and tfam files) and phenotype data GWAS analyses on canine hip dysplasia. See README file for more information.
DOI: 10.6084/m9.figshare.10095890
title: Supplementary Material for: Protective Effects of Baicalin on Lipopolysaccharide-Induced Injury in <b><i>Caenorhabditis elegans</i></b>

description: <b><i>Objectives:</i></b> Sepsis-induced inflammation injury and oxidative stress are well known causes of mortality. The anti-inflammatory effects of baicalin have been proposed in a mouse model of experimental sepsis. Here, we investigated its protective effects and associated mechanisms with respect to lipopolysaccharide (LPS)-induced injury in <i>Caenorhabditis elegans</i>. <b><i>Methods:</i></b> Worms were stimulated by LPS (100 μg/mL), with baicalin (1, 10, 100 μmol/L), for 24 h. Animal survival rates and behaviors (reversal and omega turn) were then determined. Further, levels of the inflammatory cytokines interleukin 6 (IL-6), IL-1, and tumor necrosis factor (TNF)-α were detected by enzyme-linked immunosorbent assay. Western blotting was also performed to determine the protein expression levels of Toll-like receptor 4 (TLR4), nuclear factor-κB (NF-κB), Bax, and Bcl-2. The activities of malondialdehyde (MDA) and superoxide dismutase (SOD) contents were determined using corresponding kits. <b><i>Results:</i></b> Baicalin (10, 100 μmol/L) improved LPS-stimulated <i>C. elegans</i> survival and rescued behavioral phenotypes. It also suppressed the oxidative stress related to LPS injury by decreasing MDA levels and increasing SOD activity. Moreover, the inflammatory response was inhibited as evidenced by decreased levels of cytokines including IL-6, IL-1, and TNF-α. In addition, baicalin treatment significantly decreased cleaved Bax levels and increased Bcl-2 expression in<i> C. elegans</i> treated with LPS. Simultaneously, the expression of NF-κB and TLR4 was significantly decreased. <b><i>Conclusion:</i></b> Baicalin treatment protects against LPS-induced injury by decreasing oxidative stress, repressing the inflammatory cascade, and inhibiting apoptosis.
DOI: 10.6084/m9.figshare.10095317
title: Table 2

description: Table 2
DOI: 10.6084/m9.figshare.10095872
title: Supplementary Material for: A Polymorphism in <b><i>Interleukin-1β</i></b> Gene Is Associated with the Development of Pouchitis in Japanese Patients with Ulcerative Colitis

description: <b><i>Background:</i></b> Major complications in patients with ulcerative colitis (UC) include UC-associated cancer (UCAC) and postoperative pouchitis. We aimed to identify SNPs associated with UCAC/high-grade dysplasia (HGD) and pouchitis. <b><i>Methods:</i></b> Patients with UC who underwent ileal pouch-anal anastomosis (IPAA) with &gt;2 years of follow-up after functioning pouches were included. Pouchoscopies were performed at least once to diagnose pouchitis according to the modified pouchitis disease activity index. SNP genotyping was performed for 8 SNPs reportedly associated with UCAC and pouchitis, namely: <i>ELF1</i> (rs7329174), <i>FCGR2A</i>, (rs1801274), interleukin-1β (<i>IL-1B</i>; rs1143627), <i>ITLN1</i> (rs2274910), <i>MHC</i> (rs7765379), <i>TNFα</i> (rs1799964), <i>TNFSF15</i> (rs3810936), and <i>UHMK1</i> (rs768910), using TaqMan genotyping technologies. We investigated the association of these SNPs with UCAC/HGD and pouchitis. Patients’ background data were retrospectively collected, including the presence of preoperative extraintestinal manifestation (EIM). <b><i>Results:</i></b> A total of 91 Japanese patients with UC were included. None of the 8 SNPs were associated with UCAC/HGD in our cohort. Multivariable analyses proved that the presence of preoperative EIM (hazard ratio [HR] 3.313, 95% CI 1.325–8.289) and <i>IL-1B</i> (rs1143627) TT genotype (HR 2.425, 95% CI 1.049–5.61) were independent predictive factors for the development of overall pouchitis. The presence of preoperative EIM (HR 3.977, 95% CI 1.292–12.24) and <i>IL-1B</i> (rs1143627 TT genotype; HR 3.382, 95% CI 1.101–10.39) were also independent predictive factors for the development of chronic pouchitis. <b><i>Conclusions:</i></b> The <i>IL-1B</i> (rs1143627) TT genotype and preoperative EIM were statistically significant predictors of pouchitis development after IPAA in patients with UC.
DOI: 10.6084/m9.figshare.10095101
title: Data avaiability of TGF beta 1 olive oil

description: effect olive oil on TGF beta 1 levels data
DOI: 10.6084/m9.figshare.10095137
title: Table 1

description: Table 1
DOI: 10.6084/m9.figshare.10095317.v1
title: Table 2

description: Table 2
DOI: 10.6084/m9.figshare.10095086
title: Metabolism and disposition of 2-hydroxy-4-methoxybenzophenone, a sunscreen ingredient, in Harlan Sprague Dawley rats and B6C3F1/N mice; a species and route comparison

description: 2-Hydroxy-4-methoxybenzophenone (HMB) is a common ingredient in personal care products and used as an UV stabilizer. In these studies, disposition and metabolism of [<sup>14</sup>C]HMB in rats and mice was assessed following single gavage administration (10, 100, or 500 mg/kg), single IV administration (10 mg/kg), or dermal application (0.1, 1, 10, or 15 mg/kg).Following gavage administration, [<sup>14</sup>C]HMB was well absorbed and excreted mainly in urine (39–57%) and feces (24–42%) with no apparent difference between doses, species or sexes. Distribution of HMB in tissues was minimal in rats (0.36%) and mice (&lt;0.55%).Distribution of HMB following dermal application was comparable to that following gavage administration; no differences between doses, sexes, or species were observed but absorption varied between dose vehicles. Light paraffin oil had the highest absorption and excretion (98% of the HMB dose absorbed).In rats, HMB slowly appeared in the systemic circulation (<i>T</i><sub>max</sub> ∼2–6 h) and had poor bioavailability (F%&lt;1).Urine metabolites for both species and all routes included HMB, HMB-glucuronide, 2,4-dihydroxybenzophenone (DHB), DHB-glucuronide, and DHB-sulfates, and novel minor dihydroxy metabolites including 2,5-dihydroxy-4-methoxybenzophenone.<i>In vitro</i> hepatic metabolism in mice differed from human and <i>in vivo</i> metabolism especially for phase II conjugates. 2-Hydroxy-4-methoxybenzophenone (HMB) is a common ingredient in personal care products and used as an UV stabilizer. In these studies, disposition and metabolism of [<sup>14</sup>C]HMB in rats and mice was assessed following single gavage administration (10, 100, or 500 mg/kg), single IV administration (10 mg/kg), or dermal application (0.1, 1, 10, or 15 mg/kg). Following gavage administration, [<sup>14</sup>C]HMB was well absorbed and excreted mainly in urine (39–57%) and feces (24–42%) with no apparent difference between doses, species or sexes. Distribution of HMB in tissues was minimal in rats (0.36%) and mice (&lt;0.55%). Distribution of HMB following dermal application was comparable to that following gavage administration; no differences between doses, sexes, or species were observed but absorption varied between dose vehicles. Light paraffin oil had the highest absorption and excretion (98% of the HMB dose absorbed). In rats, HMB slowly appeared in the systemic circulation (<i>T</i><sub>max</sub> ∼2–6 h) and had poor bioavailability (F%&lt;1). Urine metabolites for both species and all routes included HMB, HMB-glucuronide, 2,4-dihydroxybenzophenone (DHB), DHB-glucuronide, and DHB-sulfates, and novel minor dihydroxy metabolites including 2,5-dihydroxy-4-methoxybenzophenone. <i>In vitro</i> hepatic metabolism in mice differed from human and <i>in vivo</i> metabolism especially for phase II conjugates.
DOI: 10.6084/m9.figshare.10094972
title: Data

description: The objective of this study was to compare the <i>in vitro</i> antibacterial activities of cinnamaldehyde (CIN) and <i>Zataria multiflora</i> essential oil in conventional (ZEO), nanoemulsion (NZEO) and fortified nanoemulsion (NZEOC) forms against common foodborne pathogens.