cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r7av5j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmotherula luctuosa)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015217-250802193616735/datasets/export for details.
DOI: 10.15468/dl.ede7hk
title: Occurrence Download

description: A dataset containing 1127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmotherula minor)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1127 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015218-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jaxrnx
title: Occurrence Download

description: A dataset containing 2845 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epigonus telescopus"
 ]
}

 The dataset includes 2845 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015219-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16745298
title: Supplementary data for "The histone code of love: epigenetics of maturation of gonads in the human blood fluke Schistosoma mansoni"

description: Schistosoma mansoni is a parasitic flatworm that has two, genetically determined, sexes. We used aggregated data of 8 posttranslational histone modifications (ChIP-Seq), chromatin accessibility (ATAC-Seq), transcription (RNA-Seq) and genome feature annotations to decipher the histone code of genes involved in the differentiation of schistosome gonads such as the ovary of females and testes of males S. mansoni. We show that (i) schistosome gonads possess at least two classes of protein coding genes: H3K4me3-positive genes that display canonical features of eukaryotic protein-coding genes such as peaks of H3K4me3 at the transcription start sites (TSS) and increase of histone acetylation towards the transcription end site (TES), but also a non-canonical H3K9/27me3 plateau just upstream of the TSS. H3K4me3 enrichment at the TSS is highly predictive for transcription strength in these genes compared to a second class of protein coding genes (H3K4me3-negative genes) that does not display this pattern and is characterized by absence of the investigated histone marks at TSS and TES. This is indicative for the existence of hitherto unknown, potentially schistosome-specific histone marks in these genes. The absence of H3K4me3 at the TSS is not associated with inducible or stable genes in the gonads. Instead, gene ontology analysis indicates that H3K4me3-positive genes are related to intracellular functions typically govern processes such as metabolism or signal transduction while H3K4me3-negative genes are dedicated to intercellular functions such as cell communication or immune responses. (ii) Individual histone modifications and combinations of them are associated with functional features of the schistosome genome, something known as “chromatin colours”. In H3K4me3-positive genes, there is clear co-linearity of 3 colours, which strongly suggests a functional role of histone modifications in the control of transcription pre-initiation, promotor release, and transcription termination. (iii) There are striking chromatin structure changes during maturation of the gonads in all genomic features including protein-coding and non-protein coding genes as well as repetitive sequences. The nature of these changes is different in both sexes. H3K36me3 and H3K9me3, and H3K23ac and H3K9ac show the strongest variations. (iv) Pharmacological inhibition of histone demethylation activity by IOX1 leads to a concentration-dependent separation (“divorce”) of schistosome couples confirming the importance of H3K36/H3K9 methylation for pairing maintenance and indicating histone demethylase as a potential drug target, albeit of limited practical interest due to high homology to the human enzyme arguing for the search for schistosoma-specific histone modifications. Collectively, our findings offer unprecedented insights into histone codes and chromatin dynamics governing the reproductive development of S. mansoni gonads.

Made at IHPE.
DOI: 10.5281/zenodo.16745299
title: Supplementary data for "The histone code of love: epigenetics of maturation of gonads in the human blood fluke Schistosoma mansoni"

description: Schistosoma mansoni is a parasitic flatworm that has two, genetically determined, sexes. We used aggregated data of 8 posttranslational histone modifications (ChIP-Seq), chromatin accessibility (ATAC-Seq), transcription (RNA-Seq) and genome feature annotations to decipher the histone code of genes involved in the differentiation of schistosome gonads such as the ovary of females and testes of males S. mansoni. We show that (i) schistosome gonads possess at least two classes of protein coding genes: H3K4me3-positive genes that display canonical features of eukaryotic protein-coding genes such as peaks of H3K4me3 at the transcription start sites (TSS) and increase of histone acetylation towards the transcription end site (TES), but also a non-canonical H3K9/27me3 plateau just upstream of the TSS. H3K4me3 enrichment at the TSS is highly predictive for transcription strength in these genes compared to a second class of protein coding genes (H3K4me3-negative genes) that does not display this pattern and is characterized by absence of the investigated histone marks at TSS and TES. This is indicative for the existence of hitherto unknown, potentially schistosome-specific histone marks in these genes. The absence of H3K4me3 at the TSS is not associated with inducible or stable genes in the gonads. Instead, gene ontology analysis indicates that H3K4me3-positive genes are related to intracellular functions typically govern processes such as metabolism or signal transduction while H3K4me3-negative genes are dedicated to intercellular functions such as cell communication or immune responses. (ii) Individual histone modifications and combinations of them are associated with functional features of the schistosome genome, something known as “chromatin colours”. In H3K4me3-positive genes, there is clear co-linearity of 3 colours, which strongly suggests a functional role of histone modifications in the control of transcription pre-initiation, promotor release, and transcription termination. (iii) There are striking chromatin structure changes during maturation of the gonads in all genomic features including protein-coding and non-protein coding genes as well as repetitive sequences. The nature of these changes is different in both sexes. H3K36me3 and H3K9me3, and H3K23ac and H3K9ac show the strongest variations. (iv) Pharmacological inhibition of histone demethylation activity by IOX1 leads to a concentration-dependent separation (“divorce”) of schistosome couples confirming the importance of H3K36/H3K9 methylation for pairing maintenance and indicating histone demethylase as a potential drug target, albeit of limited practical interest due to high homology to the human enzyme arguing for the search for schistosoma-specific histone modifications. Collectively, our findings offer unprecedented insights into histone codes and chromatin dynamics governing the reproductive development of S. mansoni gonads.

Made at IHPE.
DOI: 10.15468/dl.xew2jv
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dama dama",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015220-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kg4n4a
title: Occurrence Download

description: A dataset containing 4427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-115.1647 37.65684,-115.378 37.67373,-115.4271 37.50599,-115.4504 37.61634,-115.6779 37.54731,-115.5296 37.24377,-115.7473 37.02409,-116.0185 37.27166,-115.928 36.99763,-115.9906 36.93546,-116.6995 36.9972,-116.8065 37.28315,-116.9092 37.19524,-117.0246 37.43963,-117.1808 37.52838,-117.879 37.40723,-117.9617 37.28309,-117.8731 37.28723,-117.7944 37.07732,-117.9544 37.00084,-117.9515 36.88746,-117.8227 36.66252,-117.5905 36.53221,-117.702 36.54888,-117.7001 36.33985,-117.8002 36.52408,-117.9937 36.60588,-118.0845 36.84138,-118.2462 36.70385,-118.0401 36.46577,-117.8747 35.6612,-118.1077 35.52994,-118.0064 35.30001,-118.067 35.21965,-118.7917 34.78093,-118.4387 34.71956,-117.4643 34.26589,-117.1769 34.41801,-116.4889 34.32896,-116.5167 34.16457,-116.3997 34.13626,-116.4803 34.10575,-116.3148 34.09686,-115.9023 33.67817,-115.4918 33.71225,-115.3721 33.95609,-115.2841 33.87187,-115.5649 34.39096,-115.3579 34.50802,-115.2336 34.50913,-115.1734 34.281,-115.0287 34.49015,-114.9045 34.48742,-114.8483 34.31828,-114.0637 34.52534,-113.7549 34.46349,-113.6928 34.6298,-113.9285 34.76649,-114.0439 35.11463,-113.8177 35.22367,-113.8187 35.40141,-113.7145 35.4153,-113.8815 35.71407,-114.0844 35.81357,-113.816 36.22755,-113.7161 36.52703,-113.7669 36.72443,-113.3502 36.84576,-113.2794 37.29557,-113.8386 37.20913,-113.9632 37.38364,-114.3332 37.26329,-114.575 37.38097,-114.8029 37.22457,-114.8184 37.32927,-114.9423 37.28012,-115.1626 37.47778,-115.1647 37.65684))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melozone crissalis"
 ]
}

 The dataset includes 4427 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015221-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/23414
title: Chandra X-ray Observatory ObsId 23414

description: Gaia, Galex, and the Curious Case of the Quiet K (and M) Star Coronae
DOI: 10.15468/dl.w3dvnk
title: Occurrence Download

description: A dataset containing 11415236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China"
 ]
}

 The dataset includes 11415236 records from 5254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015193-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cc2fcu
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008239-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8jw-fg4-web
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r8l-vvj-dw9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gsj-9dj-4xs
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyx-1fd-a7p
title: †Protetragonites quadrisulcatus (d'Orbigny, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4v4-hzy-z42
title: Diptera

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l5b-xfa-lvf
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3n-0t0-3vl
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zfn-2lw-p80
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/06z-xws-268
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/06g-qg2-hj9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1jm-gvf-zml
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5fl-lxn-sjv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vaw-fh8-46c
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ssl-9ta-nwe
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/14r-7ba-9wx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t4g-pp8-bpw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ane-3nl-87e
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/be6-fhf-ppk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sbv-e4p-yex
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vpz-fcb-f87
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k8t-v00-et9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pqj-fqc-jg7
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yn9-rq5-hev
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ezj-xry-xab
title: Rodentia Bowdich, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fw9-fjj-8fa
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lj6-39x-699
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r61-cs9-b6n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4jv-659-mm3
title: Proetus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/az8-44r-y2r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2hl-zza-mq4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/srz-eex-qjh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ez-lne-py9
title: †Thecosmilia Milne Edwards & Haime, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q53-9dk-2jn
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rwf-m6s-w1m
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v52-as6-rdv
title: †Archimedes Owen, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwb-p2e-zx3
title: Onnia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g84-e9e-axn
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tvh-qcn-76l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/80s-z8k-1jn
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txv-f01-m51
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bnv5q9
title: Occurrence Download

description: A dataset containing 19618 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus sabina"
 ]
}

 The dataset includes 19618 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006805-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dpc-1dz-4yp
title: Microthamnium tamariscifrons Besch. & Geh.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/f86-mc2-xy0
title: Alyssum desertorum Stapf

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/tqn-x15-9l2
title: Hieracium oxyodon f. pseudisariciforme Murr & Zahn

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnn84p
title: CCDC 615292: Experimental Crystal Structure Determination

description: Related Article: B.Antonioli, D.J.Bray, J.K.Clegg, K.A.Jolliffe, K.Gloe, K.Gloe, L.F.Lindoy|2007|Polyhedron|26|673|doi:10.1016/j.poly.2006.08.031
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnsq6b
title: CCDC 619572: Experimental Crystal Structure Determination

description: Related Article: H.Kurata, S.Muro, T.Enomoto, T.Kawase, M.Oda|2007|Bull.Chem.Soc.Jpn.|80|349|doi:10.1246/bcsj.80.349
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/1my-de3-t5c
title: Daphnopsis coriacea Taub.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/r30-p5d-zhc
title: Melinis nerviglumis (Franch.) Zizka

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc9mnq8
title: CCDC 287020: Experimental Crystal Structure Determination

description: Related Article: Guo-Ming Wang, Yan-Qiong Sun, Guo-Yu Yang|2006|J.Solid State Chem.|179|1545|doi:10.1016/j.jssc.2006.02.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/5jw-wdp-ck3
title: Heteropterys anceps Nied.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/lg3-lmw-c8d
title: Fissidens subpellucidus Broth.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rld-w27-570
title: Lolium rigidum Gaudin

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc9vf0k
title: CCDC 293508: Experimental Crystal Structure Determination

description: Related Article: Jianjiang Lu, J.A.Schlueter, U.Geiser|2006|J.Solid State Chem.|179|1559|doi:10.1016/j.jssc.2006.02.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccpl0gq
title: CCDC 642923: Experimental Crystal Structure Determination

description: Related Article: P.Sakthivel, K.Sethusankar, P.J.Shankar, P.S.Joseph|2007|Acta Crystallogr.,Sect.E:Struct.Rep.Online|63|o1947|doi:10.1107/S1600536807012019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/cjs-end-pmv
title: Agrostis stolonifera L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/f7q-p18-md9
title: Tetrapterys jussieuana Nied.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc9mnr9
title: CCDC 287021: Experimental Crystal Structure Determination

description: Related Article: Guo-Ming Wang, Yan-Qiong Sun, Guo-Yu Yang|2006|J.Solid State Chem.|179|1545|doi:10.1016/j.jssc.2006.02.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.18005.52960
title: Roof tile fromBiuk Khan djami
DOI: 10.3535/czl-wbr-432
title: Hypnum plumaeforme Wilson

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/tk3-aat-wj1
title: Hypnum plumaeforme Wilson

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/xhb-407-6ct
title: Centaurea extranea Beck

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.