cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/z5p2-z798
title: Parkes observations for project P1066 semester 2021APRS_29

description: We propose 36 hrs of Parkes observations to continue our successful Deeper, Wider, Faster (DWF) program to detect fast transients and fast radio burst (FRB) counterparts and help resolve their nature. DWF coordinates over 80 observatories worldwide at all wavelengths, from radio to gamma-ray to detect and follow-up FRBs and other elusive fast (millisecond-to-hours duration) transients. Crucially, we coordinate simultaneous deep, fast-cadenced, wide-field observations at all wavelengths to observe the same field at the same time as Parkes, enabling multi-wavelength detection before, during, and after the radio detection. Little to no multi-wavelength observations to any significant depth have been done on these timescales, leaving this parameter space underexplored. DWF coordinates major facilities to observe with Parkes, such as South Pole Telescope (mm/sub-mm), GROND (infrared), CTIO Dark Energy Camera (optical), Astrosat (UV/X-ray), HXMT (X-ray), HESS (gamma-ray), and Pierre Auger (high-energy). We perform realtime data processing and transient identification at all wavelengths that enables triggering our deep, rapid-response (within minutes) follow up programs for deep spectroscopy and imaging using the world's largest telescopes (e.g., Keck, VLT, Gemini, SALT, ATCA).
DOI: 10.25919/1zcj-2p27
title: Parkes observations for project P456 semester 2021APRS_10

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days over a wide bandwidth. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.6084/m9.figshare.16655239
title: Quality Assessment with DQV, SHACL and SPARQL

description: This resource provides files used for a quality assessment of an RDF social media archive where quality information is described using the Data Quality Vocabulary (DQV)and linked to RDF validation rules expressed in W3C SHACL.The *actual* quality assessment is then performed as SPARQL query on these sources.<br>The research activities were supported by the Belgian Federal Science Policy Office (BELSPO) BRAIN 2.0 Research Project BESOCIAL, Ghent University, imec.<br>More information in the file README.md <br>
DOI: 10.5281/zenodo.5520066
title: Supplementary data --The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA supertype-dependent manner

description: Supplementary data for the Cell Systems manuscript 'The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA supertype-dependent manner', by Hamelin <em>et al.</em> <strong>GISAID_Authors_Recognition_2021-01-19. </strong>Metadata concerning the SARS-CoV-2 viral sequences analysed, and generously provided by GISAID. <strong>Table S1. </strong>SARS-CoV-2 mutations identified from 330,246 GISAID entries (December 31<sup>st</sup> 2020), Related to Figure 1 and Figure 2. SARS-CoV-2 mutations at the nucleic and amino acid level are indicated. Number of genomes carrying mutation show the frequency of individual mutations among all SARS-CoV-2 variants. <strong>Table S2. </strong>SARS-CoV-2 prevalent mutations identified from 330,246 GISAID entries (December 31<sup>st</sup> 2020) and detected in at least 100 individuals, Related to Figure 2. <strong>Table S3.</strong> Previously validated SARS-CoV-2 CD8+ T cell epitopes and their matching mutated forms identified in this study, Related to Figure 1 and Figure 2. <strong>Table S4.</strong> List of previously validated SARS-CoV-2 CD8+ T cell epitopes. Epitopes were downloaded from https://www.mckayspcb.com/SARS2TcellEpitopes/ (as of January 2021). This database has effectively catalogued all SARS-CoV-2 CD8+ epitopes validated by 18 separate studies. See Quadeer et al. 2021 for details, Related to Figure 1 and Figure 2.
DOI: 10.5281/zenodo.5520065
title: Supplementary data --The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA supertype-dependent manner

description: Supplementary data for the Cell Systems manuscript 'The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA supertype-dependent manner', by Hamelin <em>et al.</em> <strong>GISAID_Authors_Recognition_2021-01-19. </strong>Metadata concerning the SARS-CoV-2 viral sequences analysed, and generously provided by GISAID. <strong>Table S1. </strong>SARS-CoV-2 mutations identified from 330,246 GISAID entries (December 31<sup>st</sup> 2020), Related to Figure 1 and Figure 2. SARS-CoV-2 mutations at the nucleic and amino acid level are indicated. Number of genomes carrying mutation show the frequency of individual mutations among all SARS-CoV-2 variants. <strong>Table S2. </strong>SARS-CoV-2 prevalent mutations identified from 330,246 GISAID entries (December 31<sup>st</sup> 2020) and detected in at least 100 individuals, Related to Figure 2. <strong>Table S3.</strong> Previously validated SARS-CoV-2 CD8+ T cell epitopes and their matching mutated forms identified in this study, Related to Figure 1 and Figure 2. <strong>Table S4.</strong> List of previously validated SARS-CoV-2 CD8+ T cell epitopes. Epitopes were downloaded from https://www.mckayspcb.com/SARS2TcellEpitopes/ (as of January 2021). This database has effectively catalogued all SARS-CoV-2 CD8+ epitopes validated by 18 separate studies. See Quadeer et al. 2021 for details, Related to Figure 1 and Figure 2.
DOI: 10.5517/ccdc.csd.cc284hxv
title: CCDC 2089707: Experimental Crystal Structure Determination

description: Related Article: Fábio F. Paiva, Leonildo A. Ferreira, Iara M.L. Rosa, Rafaela M.R. da Silva, Fernando Sigoli, Odivaldo Cambraia Alves, Flávio Garcia, Guilherme P. Guedes, Maria Vanda Marinho|2021|Polyhedron|209|115466|doi:10.1016/j.poly.2021.115466
DOI: 10.17632/xdhbjvkprf.1
title: Data for: Delineating the relative contribution of climate related variables to chlorophyll-a and phytoplankton biomass in lakes using the ERA5-Land climate reanalysis data

description: These files contain the raw data used for modelling chlorophyll-a concentration and phytoplankton biomass using ERA5-Land variables as predictors.
The datasets contain 640 measurements of chlorophyll-a concentration and 452 measurements of phytoplankton biomass from 51 water bodies of Greece. The measurements were collected from 2013 to 2016 under the National Lake Monitoring Programme according to the implementation of the Water Framework Directive. The data are freely accessible in the following site:  http://biodiversity-info.gr/index.php/el/lakes-data. 
In addition they contain  ERA5-Land climate and lake related variables on average monthly basis.Theextraction was conducted for the nearest grid cell to the centroid of the lake applying the nearest-neighbor interpolation algorithm. Specifically, we extracted the following variables: zonal component of the 10-m wind, meridional component of the 10-m wind, total (surface and subsurface) runoff, total precipitation, air temperature, lake bottom temperature, lake mix-layer temperature, lake mix-layer depth, lake total-layer temperature, and lake shape factor. For precipitation and runoff, we edited the native average monthly data to calculate the accumulated monthly values for each month. Average monthly wind speed was calculated through the zonal and meridional components of the 10-m wind to be used in further analysis. 
The available chlorophyll-a and phytoplankton biomass measurements were matched with monthly values of the climate reanalysis data based on the date of the sampling. For the spatial match of measurements with the gridded climate data, the nearest-neighbor interpolation algorithm was also applied. 
Thus, we generated two datasets, one containing 640 cases of chlorophyll-a paired with monthly values of the climate related variables and another containing 452 cases of phytoplankton biomass also paired with climate related variables
DOI: 10.17632/5xkc2y75zs.1
title: Data for: Organic geochemistry and gas prospectivity of Permian source rocks in the western margin of the Songliao Basin, northeastern China

description: The Permian in western margin of Songliao Basin is a strategic potential field of oil and gas resources in northeastern China, but the systematic researches since few boreholes were drilled up to Permian strata, as well as there is a lack of seismic and well-logging data. This paper presents the lithological composition of the Permian Formations on the basis of regional geological survey in western margin of Songliao Basin.
DOI: 10.17632/7s8sng9yn8.1
title: Baseline lower lymphocyte count predicts faster APOE ε4-related longitudinal cognitive decline in Parkinson’s Disease

description: The R-scripts and obtained tables used for the manuscript, entitled "Baseline lower lymphocyte count predicts faster APOE ε4-related longitudinal cognitive decline in Parkinson’s Disease".
DOI: 10.17632/4ns5ffk8fg.1
title: NSD2 dimethylation at H3K36 promotes lung adenocarcinoma pathogenesis.  Sengupta et al

description: Source Data for main and supplementary figures
DOI: 10.17632/jvkcfwyz47.1
title: Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26

description: This dataset includes the models from molecular dynamics simulations described in the article 'Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26'.  

The initial structure of the Mei-P26-NHL:RNA complex was generated by superimposing the Mei-P26 protein with the Brat-RNA complex (PDB ID: 5EX7) and copying the coordinates of the Brat RNA ligand. The superposition was performed for the 257 Cα atoms (RMSD = 1.343 Å), which matches between the Mei-26-NHL and Brat proteins. The sequence of that RNA was modified to UUUUUUU, UUUUACA, or UUUGUUGU using UCSF Chimera to prepare three starting structures for Mei-P26-NHL:RNA complexes. Molecular dynamics simulations for Mei-P26-NHL:RNA complexes for the three cases were performed using the Amber18 package. Molecular dynamics simulations were run for Brat in complex with UUGUUAA, UUUUACA and UUGUUGU RNAs as controls. Additional control simulation was run for Brat in complex with UUGUUGUUUUUUUU and the starting structure for this simulation was taken from the Brat-RNA complex with PDB ID: 4ZLR. The input structure for the simulation was prepared using tleap in a truncated octahedral box of 10 Å allowance using the TIP3P water model. Simulations were performed using the combination of the Amber ff14sb force field for proteins and the χOL3 force field for RNA. The structure was energy-minimized for 10,000 cycles with restraints, followed by 10,000 cycles without restraints. The minimized structures were subjected to heating, density equilibration and short runs of equilibration. The heating was done from 100 K to 300 K for 500 ps with restraints on the entire structure and the density equilibration was performed for 500 ps, also with restraints on the entire structure. The equilibration of the structures was run for four short rounds. The first three rounds of equilibration were run for 200 ps each with the main chain atoms constrained. The final round of equilibration was performed for 1 µs (10-6 s). The production run was run for 1000 ns. We have used constant pressure periodic boundary conditions (ntb = 2) with isotropic position scaling (ntp = 1) with a pressure relaxation time taup = 2.0 ps for the production run. The particle-mesh Ewald (PME) procedure (45) was used for computing the electrostatic interactions.  The cut-off values used for electrostatics and LJ interactions were set as 12 Å.  The equilibration steps were run with the NVT ensemble (ntb = 1) while the production run was performed with the NPT ensemble. The minimization was performed using Sander, and the subsequent steps were performed using the CUDA version of PMEMD available in the Amber package (46–48). The simulation trajectories were clustered using the reimplementation of NMRCLUST algorithm available in UCSF Chimera and the representative frames are provided as PDB files in this dataset.
DOI: 10.17632/h9z94f9y6p.1
title: Systematic Directed Evolution. (PRANCE). 

description: Real-time monitoring data for PRANCE directed evolution. Raw data contained in .db files and annotated with associated manifest.csv files. NGS files for qtRNA population sequencing are uploaded as FASTQ files, with associated barcode files for each qtRNA and time stamp.
DOI: 10.5523/bris.2dp6gppdz8krn278vks70p218m
title: Thermal stress reduces carbonate production of benthic foraminifera and changes the material properties of their shells

description: The data accompanies the following paper: Titelboim, D., et al. (2021). " Thermal stress reduces carbonate production of benthic foraminifera and changes the material properties of their shells". This dataset contains three-dimensional X-Ray tomographic datasets that reflectance the thermal stress response of two benthic foraminifera species. The data also include the raw measurements at the basis of this study including the morphological and Raman analysis
DOI: 10.5281/zenodo.5520101
title: My test set

description: This is test
DOI: 10.5281/zenodo.5520100
title: My test set

description: This is test
DOI: 10.25345/c57p0k
title: MassIVE MSV000088136 - Untargeted Metabolomics of cell-free extracts from Aspergillus sydowii grown under low- and high-salt conditions
title: Aspergillus sydowii was grown under low and high-salt conditions. Cell-free extracts were recovered, dried-down and metabolites extracted using cold acetone. Metabolites were separated by liquid chromatography and data was acquired (data-dependent acquisition) on a Sciex TripleTOF 5600 under positive ion mode. The accumulation time for TOF MS was 0.25 s/spectra over the m/z range 100-1500 Da and for MS/MS scan was 0.05 s/spectra over the m/z 50-1500 Da.
DOI: 10.21227/hfvt-9a65
title: Self-Aligning Capability of IPT Pads for High-Power Wireless EV Charging Stations

description: This paper studies magnetic forces between transmitter (Tx) and receiver (Rx) coils in an Inductive Power Transfer (IPT) system aiming to use those forces to align the coils and, consequently, improve power transfer. The analysis is conducted on a series-series compensated IPT system with planar spiral coils due to its popularity. The proposed method utilizes the bifurcation operation mode of the system and unloaded resonating receiver to maximize attractive force between magnetic couplers. 3D Finite Element Method (FEM) simulations indicate that high-power IPT systems can develop enough attractive force to align Tx and Rx coils even for nominal current. Regardless of the coil shape, e.g., spiral or DD, the attractive forces tend to increase the coupling factor, i.e., to align the coils. Hence, a smart charging station can be devised based on self-aligning capability. Furthermore, this paper proposes a mechanical structure to facilitate the attractive lateral force for the alignment of high power applications, i.e., wireless fast-charging stations. The forces are analyzed, modeled, and simulated for a 100-kW IPT system with an operating frequency of 20 kHz, while the self-aligning capability is experimentally verified on a downscale 11-kW laboratory prototype.
DOI: 10.6084/m9.figshare.16655311
title: Table_S1.docx

description: <b>Table S1.</b> Number of animals that were alive at each time point and available for each measurement displayed in figure 3, table 2, and figure S1.
DOI: 10.6084/m9.figshare.16655311.v1
title: Table_S1.docx

description: <b>Table S1.</b> Number of animals that were alive at each time point and available for each measurement displayed in figure 3, table 2, and figure S1.
DOI: 10.5281/zenodo.5520021
title: Skyros Traces

description: Traces for reproducing the results in our SOSP '21 paper: Exploiting Nil-Externality for Fast Replicated Storage.
DOI: 10.5281/zenodo.5520020
title: Skyros Traces

description: Traces for reproducing the results in our SOSP '21 paper: Exploiting Nil-Externality for Fast Replicated Storage.
DOI: 10.3886/e114251v1-96720
title: Replication data for: Temperature Shocks and Economic Growth: Evidence from the Last Half Century

description: This paper uses historical fluctuations in temperature within countries to identify its effects on aggregate economic outcomes. We find three primary results. First, higher temperatures substantially reduce economic growth in poor countries. Second, higher temperatures may reduce growth rates, not just the level of output. Third, higher temperatures have wide-ranging effects, reducing agricultural output, industrial output, and political stability. These findings inform debates over climate's role in economic development and suggest the possibility of substantial negative impacts of higher temperatures on poor countries. (JEL E23, O13, Q54, Q56)
DOI: 10.5281/zenodo.5520099
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.6084/m9.figshare.16655326
title: Meta-thinking: education data meta-analysis 2020

description: Data from Table 3 in this publication to explore replication science in meta-analyses.<br><b>The Power of Feedback Revisited: A Meta-Analysis of Educational Feedback Research</b><br><br>https://www.frontiersin.org/articles/10.3389/fpsyg.2019.03087/full
DOI: 10.5281/zenodo.5520129
title: My test 2

description: This is test description
description: Some notes here
DOI: 10.5281/zenodo.5520128
title: My test 2

description: This is test description
description: Some notes here
DOI: 10.6084/m9.figshare.16655332
title: model.hdf5

description: Network weight for segmentation of corals, seagrass, and sea urchins.
DOI: 10.6084/m9.figshare.16655332.v1
title: model.hdf5

description: Network weight for segmentation of corals, seagrass, and sea urchins.
DOI: 10.6084/m9.figshare.14936052.v1
title: Maps of cropping patterns in China during 2015-2020

description: Here we present the first annual 500-m maps of multiple cropping systems in china at national scale during 2015 to 2020,which provide information on cropping intensity with descriptions of three staple crops (Maize,paddy rice and wheat). We produced the cropping patterns maps by developing phenological metrics, which can be applied to national scale.
DOI: 10.5281/zenodo.4615691
title: Dataset of Waves generated by discrete and sustained gas eruptions with implications for submarine volcanic tsunamis

description: This dataset contains all the data used to plot figures in the manuscript "Waves generated by discrete and sustained gas eruptions with implications for submarine volcanic tsunamis" by Yaxiong Shen, Colin Whittaker, Emily Lane, James White, William Power and Bruce Melville submitted to Geophysical Research Letters. The folder "jetplumefountainquantification" contains data for figure 1. The wavedata.xlsx contains wave data and plume rise velocity data. The MATLAB script fig1.m is used to visualise the jet-plume-fountain evolution.
DOI: 10.5281/zenodo.4615690
title: Dataset of Waves generated by discrete and sustained gas eruptions with implications for submarine volcanic tsunamis

description: This dataset contains all the data used to plot figures in the manuscript "Waves generated by discrete and sustained gas eruptions with implications for submarine volcanic tsunamis" by Yaxiong Shen, Colin Whittaker, Emily Lane, James White, William Power and Bruce Melville submitted to Geophysical Research Letters. The folder "jetplumefountainquantification" contains data for figure 1. The wavedata.xlsx contains wave data and plume rise velocity data. The MATLAB script fig1.m is used to visualise the jet-plume-fountain evolution.
DOI: 10.5281/zenodo.5520138
title: Hydrological data from the Dajiuhu basin, central eastern China, during the last deglaciation

description: This is the original data used in the manuscript titled "Hydrological changes related to ENSO-like states during the last deglaciation in central eastern China" which has been accepted by Paleoceanography and Paleoclimatology. This excel includes calendar age, Rb/Sr, Zr/Rb, median grainsize and other data that used to evaluate hydrological changes in the Dajiuhu basin.
DOI: 10.5281/zenodo.5520137
title: Hydrological data from the Dajiuhu basin, central eastern China, during the last deglaciation

description: This is the original data used in the manuscript titled "Hydrological changes related to ENSO-like states during the last deglaciation in central eastern China" which has been accepted by Paleoceanography and Paleoclimatology. This excel includes calendar age, Rb/Sr, Zr/Rb, median grainsize and other data that used to evaluate hydrological changes in the Dajiuhu basin.
DOI: 10.3886/e113197v1-96721
title: Replication data for: The Costs of Patronage: Evidence from the British Empire

description: I combine newly digitized personnel and public finance data from the British colonial administration for the period 1854-1966 to study how patronage affects the promotion and incentives of governors. Governors are more likely to be promoted to higher salaried colonies when connected to their superior during the period of patronage. Once allocated, they provide more tax exemptions, raise less revenue, and invest less. The promotion and performance gaps disappear after the abolition of patronage appointments. Patronage therefore distorts the allocation of public sector positions and reduces the incentives of favored bureaucrats to perform.
DOI: 10.3886/e113783v1-96740
title: Replication data for: Improving the Design of Conditional Transfer Programs: Evidence from a Randomized Education Experiment in Colombia

description: Using a student level randomization, we compare three education-based conditional cash transfers designs: a standard design, a design where part of the monthly transfers are postponed until children have to re-enroll in school, and a design that lowers the reward for attendance but incentivizes graduation and tertiary enrollment. The two nonstandard designs significantly increase enrollment rates at both the secondary and tertiary levels while delivering the same attendance gains as the standard design. Postponing some of the attendance transfers to the time of re-enrollment appears particularly effective for the most at-risk children. (JEL H23, I21, I22, J13, O15)