cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cedsan
title: Occurrence Download

description: A dataset containing 35532 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "DatasetKey is Vulnerable marine ecosystems in the South Pacific Ocean region",
 "DatasetKey is NOAA National Coral Reef Monitoring Program Benthic Percent Cover",
 "DatasetKey is Queensland Museum provider for OZCAM",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is Atlantic and Gulf Rapid Reef Assessment - Benthic",
 "DatasetKey is Natural History Museum (London) Collection Specimens",
 "DatasetKey is Monitoreo complementarios de algas, invertebrados y peces en el Parque Nacional Arrecifes de Cozumel",
 "DatasetKey is Western Australian Museum provider for OZCAM",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Cnidaria",
 "DatasetKey is Lizard Island Research Station"
 ]
 },
 "TaxonKey is Porites Link, 1807"
 ]
}

 The dataset includes 35532 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001168-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6silxl
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armeniaca sibirica (L.) Lam."
 ]
}

 The dataset includes 63 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001168-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zc9ing
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Storeria storerioides (Cope, 1866)"
 ]
}

 The dataset includes 652 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049062-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhjpfr
title: Occurrence Download

description: A dataset containing 2623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloysia virgata (Ruiz & Pav.) Juss."
 ]
}

 The dataset includes 2623 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018555-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw6pap
title: Occurrence Download

description: A dataset containing 23219493 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Country is France",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia",
 "Year 1900-2022"
 ]
}

 The dataset includes 23219493 records from 3423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198500-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10818019
title: Working Catalogue for NIRCAM Team
title: Catalogue Version V12

description: This sis the latest working catalogue for the NIRCAM team. V12. Should be restricted and embargoed until 31/12/2025 to this group only.
DOI: 10.5281/zenodo.14749314
title: Exploring the Interaction between Protection Regime, Linear Infrastructure, and Carbon Sequestration in an Insular Forest Ecosystem

description: This repository includes the key results, datasets, and scripts used in the study assessing the interaction between protection regimes, linear infrastructures, and ecosystem services, with a focus on carbon sequestration in insular forest ecosystems. While a selection of datasets is available here, certain larger data files are available upon request from the corresponding author due to their size. This collection provides comprehensive resources for replicating the analysis and further exploring the findings presented in the associated paper.
DOI: 10.5281/zenodo.14831319
title: Dataset corresponding to the project "Aging, loneliness, and well-being in Spain"
DOI: 10.5281/zenodo.15921489
title: ERIES - THRUST dataset: The High Rotational Urban Savonius Turbine

description: This dataset comprises measured data from wind tunnel tests conducted between July and September 2023 at the “Giovanni Solari” Wind Tunnel Facility on a Savonius rotor wind turbine, having diameter 0.25 m, height 1 m. Key quantities investigated include: inlet wind speed, measured by a Pitot-static tube; rotor's rotational velocity, measured by Hall sensors; torque at the rotor axis, measured with a torquemeter, generated power, estimated from torque and rotational velocity; upstream and downstream flow velocities, recorded by hot wires; noise emissions that were recorded by four microphones downstream. Tests were performed across a range of wind tunnel velocities (up to 21 m/s) and rotor speeds (up to 2500 rpm), under smooth and turbulent flow, with turbulence intensity of approximately 4% and 8%.

Typically, each test begins when the wind tunnel reaches a steady-state speed and applying a predetermined load to the rotor. Once steady rotation is achieved, a 60-second measurement of the relevant quantities are recorded. The load is then increased, causing the turbine to settle at a new, lower rotational speed. After stabilization, another measurement is taken. This process is repeated incrementally, increasing the load step by step, until the turbine slows down to the point of near standstill.

The document readme.pdf supplies information on the data base and its use.
DOI: 10.5281/zenodo.17485929
title: Global Pasture Watch - Annual buffalo density layers at 1-km for 2000–2022 (including 95% prediction interval)

description: Global annual layers of buffalo density at 1-km spatial resolution convering the period of 2000–2022. The layers were produced using harmonized and used as reference data (55,336 census polygons and 313,604 individual data entries), random forest predictive models and a large stack of multi-source harmonized gridded/raster spatial layers (128 individual raster spatial layers harmonized at 1 km spatial resolution). 

Raster cell values represent heads km2 including:



Mean predicted values (_m_)

Upper prediction interval based on 97.5th percentiles (_p.975_)

Lower prediction interval based on 2.5th percentiles (_p.025_)


Based on 95% probability quantiles, prediction intervals are relatively wide; therefore, for a more effective use, we recommend converting them to standard deviation by dividing the range (p.975 - p.025) by four.

Raw/Uncalibrated headcounts are also provided and were computed by multiplying the density values by the actual area of potential land for livestock production.

In line with a request from our funders, livestock Layers will remain under embargo in Zenodo until the final acceptance of peer-reviewed publication. They can be accessed during the reviewing process by filling-in a form via Global Pasture Watch Early Access data program (https://survey.alchemer.com/S3/7859804/Pasture-Early-Adopters). All modeling framework presented in this work is publicly available at: https://github.com/wri/global-pasture-watch. We are currently preparing the data to be ingested in STAC and Google Earth Engine.

Related resources



Maps of livestock headcount for 2000—2022 (FAOSTAT-adjusted):All animals (Part-1)  All animals (Part-2)

Maps of livestock density for 2000—2022 (including 95% prediction interval):Cattle  Goats   Sheep  Horses Buffaloes

Livestock reference census data (2000–2022):CSV and GeoPackage files

Maps potential land for livestock production for 2000—2022 (including production systems)Raster files

Data catalogues:OpenLandMap STAC Google Earth Engine
DOI: 10.5281/zenodo.10730526
title: Neuroblastoma copper chelation GeoMx

description: To access the data, please send an e-mail to antonietta.salerno@outlook.it specifying a valid reason for your request.
DOI: 10.5281/zenodo.17009939
title: Persistent Geographic Patterns of Coral Recruitment in Hawaiʻi

description: Coral recruitment (settlement) by year, location, and coral genus in the southwest corner of Hawaii Island. These data are from the in-review paper:

Asner, G.P., R.R. Carlson, C. Labo, D. Harrison, and R.E. Martin. Persistent geographic patterns of coral recruitment in Hawaii. Oceans (in review)

This file will be updated and populated with the final dataset following peer review.
DOI: 10.5281/zenodo.15105821
title: Canadian Arctic whale genomic data for Gradient Forest analyses

description: This dataset contains resequencing data used in our Arctic whale genomics research exaiming genetic offsets using Gradient Forest analyses, including unfiltered genomic variants and filtered SNPs. Source code for genomic analyses is available at https://github.com/edegreef/arctic-whales-resequencing/tree/main/genetic_offsets. Data uploaded here contain:

Beluga whale:



sample_info_GF_beluga.csv - metadata for beluga whale samples

146Beluga.vcf.gz - all variant calls, including indels and SNPs (n = 146 beluga individuals), mapped to the beluga reference genome

140Belugas_filtered_imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 140 beluga individuals)

140Belugas_filtered_imputed_thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 140 beluga individuals)


Narwhal:



sample_info_GF_narwhal.csv - metadata for narwhal samples

narwhal_allvariants.n60.vcf.gz - all variant calls, including indels and SNPs (n = 60 narwhal individuals), mapped to the narwhal reference genome

narwhal_snps.filtered.n57.imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 57 narwhal individuals)

narwhal_snps.filtered.n57.imputed.thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 57 narwhal individuals)


Bowhead whale:



sample_info_GF_bowhead.csv - metadata for bowhead whale samples

bowhead_RWmap_allvariants.n20.vcf.gz  - all variant calls, including indels and SNPs (n = 20 bowhead individuals), mapped to the NA Right Whale reference genome

bowhead_RWmap_snps.filtered.n19.imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 19 bowhead individuals)

bowhead_RWmap.snps.filtered.n19.imputed.thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 19 bowhead individuals)
DOI: 10.5281/zenodo.14687742
title: Advances in Visuospatial Orienting Functions Assessment on Cerebral Visual Impairment: A Systematic Review

description: Cerebral visual impairment (CVI) is a brain-based visual disorder with an increasing incidence worldwide. Its diagnosis can be challenging, as visual acuity is often normal or near-normal in many cases. Visuospatial orienting functions (VOF) are higher-order, non-verbal abilities that process perceptual stimuli and mental images, enabling individuals to interact with their environment. Assessing VOF can reveal impairments in specific higher-order visual skills. Therefore, the aim of the present systematic review is to collect and analyse evidence related to the assessment of VOF in CVI subjects up to 18 years old and to identify the main biomarkers associated with this impairment. To achieve this goal, a systematic review of the literature was conducted, including primary research published between 2014 and 2024.
DOI: 10.5281/zenodo.14698803
title: Co-UDlabs \ USFD-08-RTCRIG-GUTIERREZ

description: Project Co-UDlabs "Building collaborative Urban Drainage research labs communities". 

TA project title: Evaluating level sensor methods and computational advanced modelling simulations for estimating flow in combined sewer overflows (CSO).

Uploaded data: 

- Raw data of the experiments conducted in the RTC Rig in University of Sheffield. 

- It also included the calibration data
DOI: 10.5281/zenodo.15482759
title: Data and code for Neighbors to Nature submission to CSP

description: Data and R code for "Neighbors to nature: a case study of recreation-wildlife co-existence in the Greater Yellowstone Ecosystem"
DOI: 10.5281/zenodo.16631649
title: Protein docking results for manuscript titled "Repeat Systemic Delivery of Cross-Neutralization Resistant Synthetic Vesiculoviruses Immunomodulates the Tumor Microenvironment"

description: Computational results of protein:antibody interactions and analysis scripts for ranking the protein docking results.
DOI: 10.5281/zenodo.17367642
title: Towards Sustainable Urban Transport Planning in Cities with Complex Topography: A Case Study of Constantine, Algeria Using Spatial Data Analytics and Predictive Modelling

description: This dataset supports the study “Towards Sustainable Urban Transport Planning in Cities with Complex Topography: A Case Study of Constantine, Algeria Using Spatial Data Analytics and Predictive Modelling”.

It includes processed OD flow data, mean slope measurements, classified slope maps, and Python scripts used for regression and accessibility analysis in QGIS 3.40 and Anaconda.

All data are derived from open sources (NASA SRTM, OpenStreetMap) and are released under the CC BY 4.0 license for reproducibility and reuse.
DOI: 10.5281/zenodo.15166433
title: Dataset Roland et al CB-CH chondrites
DOI: 10.5281/zenodo.15492750
title: PPI-Scanner Supplementary Dataset

description: This dataset accompanies the NeurIPS 2025 submission titled "Face to Face with Proteins: Contrastive Surface Learning for Protein–Protein Interaction Prediction."

It contains homology-aware and random train/val/test splits. 

All files were generated using the pipeline included in the supplementary code repository.
DOI: 10.5281/zenodo.14416581
title: Supplementary material: to support the assumption of no pore blocking and gel layer formation during filtration time (Separation of 5% (w/v) Prolastin)

description: The data set is a part of the PhD thesis of Nattawan Chorhirankul, Wageningen University, The Netherlands.
DOI: 10.5281/zenodo.17237031
title: Flower color and distribution of plant species: dataset of a campo rupestre community

description: Dataset of flower color and distribution of campo rupestre plant species, located in Serra do Cipó, MG-Brazil. This dataset was used in the paper "A mosaic of colors: the influence of biotic and abiotic factors shaping flower color diversity across a tropical mountain ecosystem" by Maria Gabriela Gutierrez Camargo, Montserrat Arista, Pedro Joaquim Bergamo, Beatriz Lopes Monteiro, Leonor Patrícia C. Morellato available in American Journal of Botany, 2025.
DOI: 10.5281/zenodo.15895220
title: Source data PFN2 coordinate post-transcriptional regulation manuscript Sangokoya

description: Source data PFN2 coordinate post-transcriptional regulation manuscript
DOI: 10.5281/zenodo.12963699
title: TIMCI Hospital Cost Data Kenya

description: Survey data on costs of selected hospital services in 3 hospitals in 3 counties in Kenya
DOI: 10.5281/zenodo.13869396
title: ClimEmpower: Regional Climate Service Needs

description: In preparation of the D2.1 deliverable within the ClimEmpower project, the project team has performed a survey among the five CoP regions (Costa del sol – Spain, Sicily - Italy, Osijek-Baranja County – Croatia, Troodos Mountain Range – Cyprus, PSTE – Greece) following the climate service typology proposed by Stegmaier & Visscher (2020) and asking them in a structured way what services they need.
DOI: 10.5281/zenodo.15202595
title: Digitlization of storm severity index from "Storminess in the Low Countries, 1390-1725, A de Kraker"

description: A digitilization of the storm severity metric from "Storminess in the Low Countries, 1390-1725" By Adriaan de Kraker published in Environment and History, 2013 (http://www.jstor.org/stable/43298486). This was done using WebPlotDigitizer from https://automeris.io
DOI: 10.5281/zenodo.15297914
title: Kallyope Test Data

description: Test dataset
DOI: 10.5281/zenodo.16791184
title: Machine learning-based paleobathymetric reconstructions using archaeal lipid biomarkers
DOI: 10.5281/zenodo.17055926
title: Dataset for "Statin Therapy and Mortality in Critically Ill Heart Failure Patients" (v1.0)

description: This dataset contains the de-identified patient-level data used in the study "Statin Therapy and Mortality in Critically Ill Heart Failure Patients" (v1.0). It comprises demographic characteristics, laboratory values, comorbidities, statin-exposure variables, and in-hospital mortality outcomes for adult patients admitted to intensive care with a primary diagnosis of heart failure. The data were extracted from Medical Information Mart for Intensive Care (MIMIC-IV, v2.2) and are supplied in both CSV and RData formats to facilitate reproducibility. A configuration file (PRJ-1.ini) and a compressed archive (PRJ-1.7z) with analysis scripts and complete statistical results are also provided. All patient identifiers have been removed in accordance with HIPAA standards. This release (v1.0) corresponds to the analyses reported in the main publication.
DOI: 10.5281/zenodo.4292288
title: Oil companies report's emissions dataset

description: This dataset provides the emissions of oil companies, in order to indirectly calculate the EROI for the 1999-2018 interval.
DOI: 10.5281/zenodo.15912015
title: Zou et al. (2025), Identifying metabolic indicators of physiological ageing during storage of potato seed tubers - Supplementary data

description: File: Figurative description of the 48 selected metabolites during transition from Phase 0 to Phase 1 (across physiological phases and across sampling timings)

Table: Peak intensity of (GC-MS and LC-MS) metabolites selected for each linear regression model across potato tuber samples of four cultivars stored at different temperatures for two seasons.
DOI: 10.5281/zenodo.17651970
title: Spatial transcriptomics analysis code

description: This repository contains the code used for the spatial transcriptomics analysis of mouse lung tissue samples included in the study. The analysis was performed on three experimental groups: (1) unvaccinated mice, (2) mice vaccinated with GLA-3M-052-LS + OVA, and (3) mice vaccinated with GLA-3M-052-LS + OVA with CD4/CD8 blocking. The code was used to process raw spatial transcriptomics data, perform quality control, generate spatial expression matrices, and conduct downstream analyses including clustering, differential expression, and spatial domain mapping.
DOI: 10.5281/zenodo.15259958
title: Apparent Optical Properties DOORS cruise 3, 01-20 June, 2024

description: Apparent Optical Properties of seawater  determined from multispectral free-fall system (MicroPro, Satalantic Inc)  during R/V Mare Nigrum cruise #3 at  11 stations mostly located in  Georgian coastal Black Sea waters . The MicroPro simultaneously measure the upwelling radiance Lu (z, λ), the downward irradiance Ed (z, λ) and the upward irradiance Eu (z, λ) as a function of depth z and wavelength λ, in addition to the above–water downward irradiance Ed (0+λ). All applied sensors (i.e., radiometers of the OCR-507) have equivalent spectral channels with 10 nm bandwidth centered at the nominal wavelengths 412, 443, 490, 510, 555, 665, and 683 nm. Data products from the free-fall optical profilers include spectral values of: remote sensing reflectance and  diffuse attenuation coefficient.
DOI: 10.5281/zenodo.15172377
title: Floating marine macro litter DOORS cruise 3, 01-20 June 2024

description: The datasest contains floating marine macro litter (> 2.5 cm)  data obesrved during  R/V Mare Nigrum cruise #3, within 33 transects located in the Bulgarian, Turkish and Georgian  Black Sea waters, 1-20 June, 2024 in the framework H2020 DOORS Project. The file contains information for the densities of floating marine macro litter (expressed in number of items. km-2) along survey transects, locations of transects (middle of transect) and date of the observation. The floating marine macro litter densities were determined in compliance with MSFD protocol for visual observations based on fixed-width strip transect method.
DOI: 10.5281/zenodo.17148175
title: Effect of Nitrogen Regime on Rice Grain Nutritional Traits and Multi-Trait Selection of Superior Genotypes

description: ## OverviewDataset, R scripts, and reproducibility materials accompanying the JCS manuscript:“Effect of Nitrogen Regime on Rice Grain Nutritional Traits and Multi-Trait Selection of Superior Genotypes”.

## Contents- /data/ — input CSVs.- /scripts/ — four R scripts:  1) 1_MixedModel_ANOVA.R — α-lattice mixed models; Type-III ANOVA; RLRT for random terms; variance components; BLUPs/EMMeans; entry-mean H²; descriptive stats.  2) 2_BLUP_ByENV_AdjustedMeans.R — per-environment GEN BLUPs + adjusted means with SE.  3) 3_PCA_Clustering_Correlation.R — PCA; k-means diagnostics (elbow, silhouette, gap); cluster biplots; Pearson correlation heatmaps; composites.  4) 4_MultiTrait_Selection_Pipeline.R — MTSI, MGIDI, Smith–Hazel; AMMI/GGE confirmations; stability & consensus visuals.- /Reproducibility/ — session snapshots (sessionInfo*.txt), package_info.csv, and SHA-256/MD5 checksums.- /outputs/ — derived figures/tables (can be regenerated).

## How to reproduce- R ≥ 4.5.1 (Windows 11 tested), RStudio ≥ 2025.5.1.513 recommended.- Open the project root in RStudio and run scripts 1→4 (or use `Rscript` from terminal).- Scripts quietly install missing packages; no internet is needed at runtime once installed.

## Licensing- Data, figures, and documentation: CC BY 4.0 (LICENSES/LICENSE-data-CCBY4.txt).- Code (all R scripts): MIT (LICENSES/LICENSE-code-MIT.txt).Note: The deposit’s UI license is CC-BY-4.0; code remains MIT by file headers and license file.

## CitationPlease cite the Zenodo record (10.5281/zenodo.17148175) and the JCS article when available.
DOI: 10.5281/zenodo.15877450
title: Data related to "Enhanced Plant Bottom-up Histone Proteomics"
DOI: 10.5281/zenodo.17185099
title: Training dataset for "Machine learning modelling of sonochemical systems using physically-derived dimensionless groups"

description: This dataset contains the training data used in the article “Machine learning modelling of sonochemical systems using physically-derived dimensionless groups.”

The data are organized in an Excel file and include both the dimensional and dimensionless input features, along with the corresponding experimental/observed outcomes employed for model training and validation.

The dataset ensures reproducibility of the results presented in the paper and may be reused for further research on modelling of sonochemical systems.
DOI: 10.5281/zenodo.15421884
title: Terrestrial heat flow measurments -  DOORS cruise 2 Leg 2, 12-18 September 2023

description: Heat flow and sediment sampling metadata and preliminary result from T-measurements in sediments in the column measured during DOORS cruise2,  Leg 2, 12-18 September 2023.
DOI: 10.5281/zenodo.17401407
title: Gastropod morphometrics from the Cosman Shell Collection, with a focus on the region of Waianae, Oahu, Hawaii, USA

description: Specimens measured are from the Cosman Shell Collection at Occidental College (CSCOC). The morphometric data were collected using digital calipers (lengths, widths, thickness) and an analytical balance (weight). Original species names have been updated as of 2025 to reflect currently accepted taxonomic names.