cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/03p-vk9-sz7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ma0-gw6-tnl
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5p3-prg-0yy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/84q-gzh-zy0
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dnx-9ja-2qw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tzk-da1-fv9
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hng-5k4-msq
title: Cibicidoides mundulus (Brady, Parker & Jones, 1888)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a9f-627-4pn
title: Elphidium Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qs7-q49-ec9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/326-0x6-05m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jnl-nmq-z7v
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gza-8ql-ra6
title: †Spiroplectammina anceps (Reuss, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yen-f5p-87r
title: Myrsine L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0j1-s8v-pc2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bjs-hde-s0j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/66s-l9f-xld
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8h-dya-8mm
title: †Ammonia atjehensis (van der Vlerk, 1924)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tdv-nnr-3k8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aab-yz1-btx
title: Sphaerogypsina globulus (Reuss, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x5a-9xb-96y
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4dp-1jj-jf6
title: †Alveolina elliptica (Sowerby, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cs6-5ks-pk3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/69n-mex-5fz
title: †Nummulites subbrongniarti Verbeek, 1871

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bhr-t6b-xtq
title: †Miogypsinoides complanatus (Schlumberger, 1900)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d33-lxs-c90
title: Globigerina

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/efl-9wm-z8z
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tn6-5nv-0gm
title: Operculinella Yabe, 1918

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lxe-gjq-kky
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pr7-mlq-tmy
title: †Nummulites fichteli Michelotti, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v64-06c-c6m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hsm-g3q-vkb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jqh-nfy-rrn
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/352-3zh-zfp
title: †Discocyclina augustae van der Weijden, 1940

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jwy-bmg-rxq
title: Laticarinina pauperata (Parker & Jones, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/48a-w4r-3wc
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z4z-qnw-jb8
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m11-3w7-0hd
title: †Discocyclina archiaci (Schlumberger, 1903)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r25-2q7-143
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.28430282
title: Bothrops insularis genome assembly

description: Genome sequence of the critically endangered golden lancehead (Bothrops insularis).
DOI: 10.6084/m9.figshare.28430282.v1
title: Bothrops insularis genome assembly

description: Genome sequence of the critically endangered golden lancehead (Bothrops insularis).
DOI: 10.3535/nwj-2g6-3vp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.b7t6bu
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azadirachta indica",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022016-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e08-thh-w43
title: Spiroloculina limbata d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s71-wa3-p2c
title: †Siderolites calcitrapoides Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ghmhu4
title: Occurrence Download

description: A dataset containing 69483 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((108.0307 -8.216364, 110.9095 -8.216364, 110.9095 -7.427288, 108.0307 -7.427288, 108.0307 -8.216364))"
 ]
}

 The dataset includes 69483 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009874-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15532564
title: dataset SN
DOI: 10.5281/zenodo.15532565
title: dataset SN
DOI: 10.5281/zenodo.16753751
title: Dataset for "Capturing the beat: Quantification of flagellar kinematics and 3D beat patterns in Pseudobodo sp. using digital holographic microscopy"

description: This repository contains all data supporting the publication "Capturing the beat: Quantification of flagellar kinematics and 3D beat patterns in Pseudobodo sp. using digital holographic microscopy"

Description of each data file:



data S1. Results of three-dimensional flagellar tracking of Pseudobodo sp. during swimming. Processed 3D coordinates of the flagellum are organized into individual worksheets, each corresponding to a single frame of the sequence and labeled by its frame number. Each worksheet contains the following columns: a numerical identifier for each point along the flagellum, its (x,y) coordinates in pixels, its z-coordinate in z-stack slices, and the corresponding (x,y,z) coordinates converted to micrometers (μm).

data S2. Results of three-dimensional flagellar tracking of Pseudobodo sp. during feeding. Processed 3D coordinates of the flagellum are organized into individual worksheets, each corresponding to a single frame of the sequence and labeled by its frame number. Each worksheet contains the following columns: a numerical identifier for each point along the flagellum, its (x,y) coordinates in pixels, its z-coordinate in z-stack slices, and the corresponding (x,y,z) coordinates converted to micrometers (μm).

data S3. Results of the flagellar kinematics analysis, comparing Pseudobodo sp. behavior during swimming and feeding. The data includes mean values and standard deviations for a set of key metrics calculated for each behavior mode. The metrics included in the analysis are: 2D length, 3D length, maximum radial distance, polar angle range, azimuthal angle range, planarity index, tortuosity, and convex hull volume.






 

For access to raw data and holograms, please contact Patryk Nienaltowski or Yves Emery.
DOI: 10.15468/dl.sh7r7g
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pangio anguillaris)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020469-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qssjv4
title: Occurrence Download

description: A dataset containing 801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Xerocrassa geyeri"
 ]
}

 The dataset includes 801 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020470-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny5bp4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllanthus rubiginosus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020473-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16752169
title: Third-octave band spectra and spectrograms of DataSEC sounds

description: This dataset supports the spectral analysis presented in the associated study and is based on the DataSEC dataset (DOI: 10.5281/zenodo.15393250), a previously developed and validated collection by the authors. DataSEC contains 5,048 .wav audio recordings covering 22 environmental sound classes, further subdivided into a total of 40 sub-classes. For each recording, both the third-octave band spectrum and spectrogram are provided to support detailed spectral exploration.

To offer practical spectral references for each sound class, third-octave band spectra and spectrograms were computed for all recordings. Each sub-class is treated as an independent category.

Signal processing was performed using MATLAB R2024b Update 5, primarily leveraging functions from the Signal Processing Toolbox. The frequency range was set between 20 Hz and 20 kHz, consistent with standard practices in environmental acoustics and the typical range of human hearing.

Given the variability in sound levels across the recordings, absolute sound pressure levels (SPL) were not used directly. Instead, each third-octave spectrum was min-max normalized, highlighting relative spectral patterns across different sound types and enabling meaningful comparisons.

To capture temporal spectral variations, third-octave band spectrograms were computed using a 50 ms Hann window with 50% overlap. Each spectrogram displays time on the x-axis (in seconds), third-octave center frequencies on the left y-axis, and unweighted SPL on the color scale. This representation allows for the identification of both transient and continuous sound events and facilitates the interpretation of spectral dynamics across time and frequency.

The dataset is organized into two main folders:



"Third_octave_band_spectra.zip" contains one spectrum per audio file, grouped by sound class

"Third_octave_band_spectrogram.zip" containing the corresponding spectrograms.


All files are provided in .svg vector format to ensure maximum clarity and scalability. File names directly reference the corresponding .wav recordings in the original DataSEC dataset, ensuring seamless cross-referencing and traceability.
DOI: 10.5065/ktet-k963
title: ICARUS Chamber Experiment: UCR-CECERT-APL-Cocker Group_20161220_SOA surrogate/NOx/H2O2_Hydroxyl radical_No Seed_EPA2291B - Weihan

description: Goals: Observing OH-initiated m-xylene reactions under SOA surrogate and NOx environment.Summary: Target: 1.1 ppmC SOA surrogate, 25 ppb NOx, 1 ppm H2O2, 25 ppb m-xylene (A) INSTRUMENTS: SMPS, GC1, AMS, VTDMA, HTDMA, APMOrganization: UCR-CECERT-APL-Cocker Group Lab Affiliation: University of California, Riverside, CE-CERT Chamber: EPA chamberExperiment Category: Photolysis, any phase, Blank/Control Oxidant: Hydroxyl radical Reactants: SOA surrogate, NOx, H2O2 Reaction Type: Photooxidation Relative Humidity: 0.01 Temperature: 28 Pressure: 0.015'' H2O
DOI: 10.15468/dl.guep3v
title: Occurrence Download

description: A dataset containing 2187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Musa velutina"
 ]
}

 The dataset includes 2187 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020471-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pfx24
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphenomorphus incognitus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020472-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf2dtt
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllastrephus albigula)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 213 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020474-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/9zr2-ef50
title: ICARUS Chamber Experiment: UCR-CECERT-APL-Cocker Group_20161013_SOA surrogate/NOx_Hydroxyl radical_No Seed_EPA2264B - Weihan

description: Goals: Observing ground reactions between SOA surrogate and NOx; Check chamber bag and cleaningSummary: Target: 2.2 ppmC SOA surrogate + 25 ppb NOx INSTRUMENTS: SMPS, GC1Organization: UCR-CECERT-APL-Cocker Group Lab Affiliation: University of California, Riverside, CE-CERT Chamber: EPA chamberExperiment Category: Photolysis, any phase, Blank/Control Oxidant: Hydroxyl radical Reactants: SOA surrogate, NOx Reaction Type: Photooxidation Relative Humidity: 0.01 Temperature: 28 Pressure: 0.015'' H2O
DOI: 10.5281/zenodo.15367352
title: Functionally dominant hotspot mutations of mitochondrial ribosomal RNA genes in cancer
DOI: 10.5281/zenodo.15367353
title: Functionally dominant hotspot mutations of mitochondrial ribosomal RNA genes in cancer
DOI: 10.15468/dl.na3637
title: Occurrence Download

description: A dataset containing 388920 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Angola"
 ]
}

 The dataset includes 388920 records from 853 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020445-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/jmze-1611
title: ICARUS Chamber Experiment: Nguyen Group_20190922_ALPHA-PINENE/OZONE/hydrogen peroxide_Ozone_Ammonium sulfate_control_for_20190918

description: Goals: Part of a series to quantify the nitrooxy-hydroperoxide yield and the SOA yield from nighttime RO2+HO2-dominated NO3-initiated chemistry of a-pinene by adding H2O2 + ozone + NO2 to the chamber. This experiment serves as a "no-NO2" control for the experiment on 20190918, to see what the ozonolysis products are so those can be subtracted off the NO3 + ozonolysis results.Summary: H2O2 and O3 were injected in the chamber and allowed to equilibrate. Ammonium sulfate seed particles were injected. Then a-pinene was injected and decayed by reaction with ozone. Gas phase was monitored by CF3O- CIMS and particle formation by SMPS.Organization: Nguyen Group Lab Affiliation: UC Davis Chamber: Tran's big bag of airExperiment Category: Gas phase chemical reaction, Aerosol formation Oxidant: Ozone Reactants: ALPHA-PINENE, OZONE, hydrogen peroxide Reaction Type: Dark oxidation Relative Humidity: 5 Temperature: 22 Seed Name: Ammonium sulfate Pressure: 755 Torr
DOI: 10.17632/xmhcrwsdyd
title: LINF_250006500

description: RPB6/omega subunit-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xmhcrwsdyd.1
title: LINF_250006500

description: RPB6/omega subunit-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7s2y7g4whx
title: LINF_250006000

description: Qc-SNARE protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7s2y7g4whx.1
title: LINF_250006000

description: Qc-SNARE protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r38g3ggrnz
title: LINF_250005800

description: Poly(A)-binding protein 3 | PABP3; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r38g3ggrnz.2
title: LINF_250005800

description: Poly(A)-binding protein 3 | PABP3; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.sy7gn4
title: Occurrence Download

description: A dataset containing 2225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunbergia alata",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2225 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020475-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygzjtj
title: Occurrence Download

description: A dataset containing 1233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "Country is India",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is IND",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elephas maximus",
 "Year 2011-2025"
 ]
}

 The dataset includes 1233 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020479-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9b3c2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunbergia alata",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020476-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdvr6v
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunbergia alata",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 238 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020477-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14921669
title: Cropped single instrument frames subset from Cholec80

description: This dataset is a subset of the original Cholec80 dataset and is used by the OpenMIBOOD framework to evaluate a specific out-of-distribution setting.When using this dataset, it is mandatory to cite the corresponding publication (OpenMIBOOD) and to follow the acknowledgement and citation requirements of the original dataset (Cholec80).

The original Cholec80 dataset (associated paper,Homepage) consists of 80 cholecystectomy surgery videos recorded at 25 fps, performed by 13 surgeons. It includes phase annotations (25 fps) and tool presence labels (1 fps), with phase definitions provided by a senior surgeon. A tool is considered present if at least half of its tip is visible. The dataset categorizes tools into seven types: Grasper, Bipolar, Hook, Scissors, Clipper, Irrigator, and Specimen bag. Multiple tools may be present in each frame. Additionally, 76 of the 80 videos exhibit a strong black vignette.

For this dataset subset, frames were extracted based on tool presence labels, selecting only those containing Grasper, Bipolar, Hook, or Clipper while ensuring that only a single tool appears per frame. To enhance visual consistency, the black vignette was removed by extracting an inner rectangular region, where applicable.