cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14616818.v1
title: Land use and land cover play weak roles in typhoon economic losses at the county level

description: Many empirical typhoon economic loss models consider that the losses caused by typhoons mainly depend on the intensity of the hazards and the exposure in the affected areas. Few studies have attracted attention to the role of disaster-formative environmental factors in typhoon losses. In this study, we chose land use and land cover (LULC) as disaster-formative environmental factors together with typhoon wind speed, rainfall, and gross domestic product (GDP) as predictive factors for typhoon economic losses in Guangdong Province, China. The results showed that the intensity of wind speed was the most important factor, while LULC played weak roles in typhoon economic losses for 23 typical typhoons in terms of county level losses in Guangdong. Subregionally, typhoon economic loss models performed better in coastal areas than in noncoastal areas.
DOI: 10.7924/r4v40xs2n
title: Data from: Self-assembling allergen vaccine platform raises therapeutic allergen-specific IgG responses without induction of systemic allergic responses

description: Allergen immunotherapies are often successful at desensitizing allergic patients but can require life-long dosing and suffer from frequent adverse events including instances of systemic anaphylaxis, leading to poor patient compliance and high cost. Allergen vaccines, in turn, can generate more durable immunological allergen desensitization with far fewer doses. However, like immunotherapies, allergen vaccines are often highly reactogenic in allergic patients, hampering their use in therapeutic settings. In this work, we utilize a peptide-based self-assembling nanofiber platform to design allergen vaccines against allergen B-cell epitopes that do not elicit systemic anaphylaxis when administered subcutaneously to allergic mice. We show that, in contrast to protein vaccines, nanofiber vaccines prevent leakage of allergen material into the vascular compartment, a feature that likely underpins their reduced systemic reactogenicity. Further, we show that our allergen vaccine platform elicits therapeutic IgG antibody responses capable of desensitizing allergic mice to allergen-induced Type I hypersensitivity reactions. Finally, we have demonstrated a proof-of-concept for the therapeutic potential of nanofiber-based peanut allergen vaccines directed against peanut allergen-derived epitopes.
DOI: 10.5517/ccdc.csd.cc2d121l
title: CCDC 2205558: Experimental Crystal Structure Determination

description: Related Article: Chunyang Zhang, Yuelan Li, Zhaojun Chu, Shuangzhi Yuan, Yanan Qiao, Jiaozhen Zhang, Lin Li, Yueqing Zhang, Ruifeng Tian, Yajie Tang, Hongxiang Lou|2023|Chin.Chem.Lett.|35|108206|doi:10.1016/j.cclet.2023.108206
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7r7n
title: CCDC 2211981: Experimental Crystal Structure Determination

description: Related Article: Chen Chen, Jin Zhou, Jing Jiang, Yang Li, Ting Mao, Cheng Peng, Gu Zhan, Wei Huang|2024|Chin.Chem.Lett.|35|108295|doi:10.1016/j.cclet.2023.108295
description: Related Article: Chen Chen|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmx76
title: CCDC 2223668: Experimental Crystal Structure Determination

description: Related Article: Bingsen Xiang, Yuhao Wang, Chuqing Xiao, Fengkai He, Yiyong Huang|2024|Chin.Chem.Lett.|35|108777|doi:10.1016/j.cclet.2023.108777
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fds5t
title: CCDC 2246606: Experimental Crystal Structure Determination

description: Related Article: Bingsen Xiang, Yuhao Wang, Chuqing Xiao, Fengkai He, Yiyong Huang|2024|Chin.Chem.Lett.|35|108777|doi:10.1016/j.cclet.2023.108777
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fb936
title: CCDC 2244217: Experimental Crystal Structure Determination

description: Related Article: Andrei Andreichenko, Aurélien R. Willauer, Till Schertenleib, Antoine Curé, Rosario Scopelliti, Farzaneh Fadaei-Tirani, Wendy L. Queen, Anne-Sophie Chauvin, Marinella Mazzanti|2023|Inorg.Chem.|62|7982|doi:10.1021/acs.inorgchem.3c00881
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.11471106
title: MOESM5 of DeepMF: deciphering the latent patterns in omics profiles with a deep learning method

description: Additional file 5 DMF adjusted rand index on cancer data sets.
DOI: 10.6084/m9.figshare.11471106.v1
title: MOESM5 of DeepMF: deciphering the latent patterns in omics profiles with a deep learning method

description: Additional file 5 DMF adjusted rand index on cancer data sets.
DOI: 10.6084/m9.figshare.8849684
title: Additional file 1: of Quantitative proteomic analysis of sperm in unexplained recurrent pregnancy loss

description: Table S1. The total proteins were identified using an iTRAQ based quantitative proteomic method. (XLSX 454 kb)
DOI: 10.6084/m9.figshare.8849684.v1
title: Additional file 1: of Quantitative proteomic analysis of sperm in unexplained recurrent pregnancy loss

description: Table S1. The total proteins were identified using an iTRAQ based quantitative proteomic method. (XLSX 454 kb)
DOI: 10.6084/m9.figshare.16714010.v1
title: Additional file 4 of Gammaproteobacteria, a core taxon in the guts of soil fauna, are potential responders to environmental concentrations of soil pollutants

description: Additional files 3: Data set S1. Uploading sequence data ID. Data set S2. Antibiotic resistance gene primers.
DOI: 10.21227/8vkr-qt41
title: IEEEXtreme 15: Expression Evaluation

description: This dataset contains a total of 11730 submissions, with 1% correct solutions and 63% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/expression/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.16714010
title: Additional file 4 of Gammaproteobacteria, a core taxon in the guts of soil fauna, are potential responders to environmental concentrations of soil pollutants

description: Additional files 3: Data set S1. Uploading sequence data ID. Data set S2. Antibiotic resistance gene primers.
DOI: 10.6084/m9.figshare.16714020
title: Additional file 4 of LncRNA MCF2L-AS1 aggravates the malignant development of colorectal cancer via targeting miR-105-5p/RAB22A axis

description: Additional file 4 Supplementary Table 1 Related information on plasmids quantities and transfection concentration was presented.
DOI: 10.6084/m9.figshare.16714020.v1
title: Additional file 4 of LncRNA MCF2L-AS1 aggravates the malignant development of colorectal cancer via targeting miR-105-5p/RAB22A axis

description: Additional file 4 Supplementary Table 1 Related information on plasmids quantities and transfection concentration was presented.
DOI: 10.15468/zrtykj
title: A Collection of Coral-reef Fishes Made by Dr. and Mrs. Marshall Laird at Fiji 1954

description: The collection here reported contains 360 specimens, chiefly coral-reef forms, of which there are 36 species, comprising 9 new additions to the islands. Two of the latter were described as new. Of the 36 species listed, nine are additions to the Fiji Islands. They are Choeroicthys brachysoma (F. Syngnathidae), Cephalopholis argus (F. Serranidae), Chrysiptera yamashimai (F. Pomacentridae), Tripterygion hemimelas (F. Clinidae), Salarias sinuosus Snyder (F. Blennridae), Acentrogobius puntang (F. Gobridae) and Acentrogobius cauerensis (F. Gobridae). The Cheorichthys, Chrysiptera, and Salarias are also additional to the vast fish fauna of Oceania. A new species of Chrysiptera, (F. Pomacentridae) and a new species of Scorpaena (F. Scorpaenidae) are described.
DOI: 10.15468/cqktvq
title: Catch composition and measurement records from trawling, RV Investigator voyage IN2017_V05, North West Shelf, Australia (2017)

description: Survey sampling occurred aboard the RV Investigator between 12 October and 6 November 2017 between 30 and 125 km offshore between Port Hedland and the Montebello Islands on the Pilbara section of the North West Shelf, Western Australia, in water depths of 25 m to 100 m. Approximately 373 fish taxa from 89 families were identified.. The following families had the highest number of identified taxa: Carangidae (19 species), Apogonidae (17), Serranidae and Labridae (16 species), Lutjanidae, Monacanthidae, Nemipteridae and Scorpaenidae (12), Dasyatidae, Synodontidae and Platycephalidae (11) and Lethrinidae (10). Other diverse families included Gobiidae, Bothidae and Tetraodontidae (9), Chaetodontidae and Paralichthyidae (8), Mullidae, Muraenidae and Ostraciidae (7 each), and Syngnathidae (6 each). All other families had five or less species and 41 families were represented by a single species. One hundred and thirty-three “soft coral” species (133) within the subclass Octocorallia, Order Alcyonacea were identified. The following families had the highest number of identified taxa: Plexauridae (58), Nephtheidae (13), Acanthogorgiidae (13), Ellisellidae (12) and Nidaliidae (10). All other families were represented by only a few species (1–9). Voyage details (metadata, projects, other datasets either online or as downloads, publications and reports, events, maps etc) can be accessed at https://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=IN2017_05 If this data has been used in any products, please acknowledge with the following: We acknowledge the use of the CSIRO Marine National Facility (https://ror.org/01mae9353) in undertaking this research.
DOI: 10.15468/38n5yu
title: WAMSI Node 3.1.1b and 3.2.2 - Ecosystem Effects of Fishing: finescale coral reef fish surveys Ningaloo Reef, Australia (2006)

description: From 2006 to 2007 at northern Ningaloo Reef, stereo Baited Remote Underwater Video (stereo-BRUVs) and stereo Diver Operated Video (stereo-DOVs) were used to measure fish assemblages across shallow coral reef lagoon habitats. Four areas were identified including Osprey and Mandu Sanctuary, and Osprey and Mandu Reference Areas which were studied with stereo-BRUV and stereo DOV transects, during two successive summer and winter periods. Each time, six stereo BRUVs and 5 stereo-DOV transects were collected from within 6 coral reef lagoon habitats at 2 well established sanctuary zones and adjacent areas. The video footage was used to create the raw abundance and length data of different fish species.
DOI: 10.25345/c5bc3t78g
title: MassIVE MSV000094194 - Multivalent Coiled-Coil Interactions as a Conserved Design Principle for Centrosome Assembly
title: Purified SPD-5 (in Storage Buffer; 25 mM HEPES, pH 7.4, 500 mM KCl, 0.1% CHAPS, 1% glycerol) was diluted in Assembly Buffer (25 mM HEPES, pH 7.4, 150 mM KCl) and incubated for 2 hr at 23 C. Final conditions for mass spectrometry analysis of multimeric species included 1.7 mM protein, 200 mM KCl and 2 hr incubation at 23 C. For DMTMM cross-linking, 8 mM 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride (Sigma-Aldrich) was added to the protein samples and incubated at 23 C with shaking for 45 min. Reactions were quenched with 50 mM ammonium bicarbonate and incubated at 23 C for 15 min.
DOI: 10.6084/m9.figshare.8325461
title: Human exposure to trichloroethylene is associated with increased variability of blood DNA methylation that is enriched in genes and pathways related to autoimmune disease and cancer

description: Human exposure to trichloroethylene (TCE) is linked to kidney cancer, autoimmune diseases, and probably non-Hodgkin lymphoma. Additionally, TCE exposed mice and cell cultures show altered DNA methylation. To evaluate associations between TCE exposure and DNA methylation in humans, we conducted an epigenome-wide association study (EWAS) in TCE exposed workers using the HumanMethylation450 BeadChip. Across individual CpG probes, genomic regions, and globally (i.e., the 450K methylome), we investigated differences in mean DNA methylation and differences in variability of DNA methylation between 73 control (&lt; 0.005 ppm TCE), 30 lower exposed (&lt; 10 ppm TCE), and 37 higher exposed (≥ 10 ppm TCE) subjects’ white blood cells. We found that TCE exposure increased methylation variation globally (Kruskal-Wallis <i>p</i>-value = 3.75e-3) and in 25 CpG sites at a genome-wide significance level (Bonferroni <i>p</i>-value &lt; 0.05). We identified a 609 basepair region in the <i>TRIM68</i> gene promoter that exhibited hypomethylation with increased exposure to TCE (FWER = 1.20e-2). Also, genes that matched to differentially variable CpGs were enriched in the ‘focal adhesion’ biological pathway (<i>p</i>-value = 2.80e-2). All in all, human exposure to TCE was associated with epigenetic alterations in genes involved in cell-matrix adhesions and interferon subtype expression, which are important in the development of autoimmune diseases; and in genes related to cancer development. These results suggest that DNA methylation may play a role in the pathogenesis of TCE exposure-related diseases and that TCE exposure may contribute to epigenetic drift.
DOI: 10.6084/m9.figshare.8325461.v1
title: Human exposure to trichloroethylene is associated with increased variability of blood DNA methylation that is enriched in genes and pathways related to autoimmune disease and cancer

description: Human exposure to trichloroethylene (TCE) is linked to kidney cancer, autoimmune diseases, and probably non-Hodgkin lymphoma. Additionally, TCE exposed mice and cell cultures show altered DNA methylation. To evaluate associations between TCE exposure and DNA methylation in humans, we conducted an epigenome-wide association study (EWAS) in TCE exposed workers using the HumanMethylation450 BeadChip. Across individual CpG probes, genomic regions, and globally (i.e., the 450K methylome), we investigated differences in mean DNA methylation and differences in variability of DNA methylation between 73 control (&lt; 0.005 ppm TCE), 30 lower exposed (&lt; 10 ppm TCE), and 37 higher exposed (≥ 10 ppm TCE) subjects’ white blood cells. We found that TCE exposure increased methylation variation globally (Kruskal-Wallis <i>p</i>-value = 3.75e-3) and in 25 CpG sites at a genome-wide significance level (Bonferroni <i>p</i>-value &lt; 0.05). We identified a 609 basepair region in the <i>TRIM68</i> gene promoter that exhibited hypomethylation with increased exposure to TCE (FWER = 1.20e-2). Also, genes that matched to differentially variable CpGs were enriched in the ‘focal adhesion’ biological pathway (<i>p</i>-value = 2.80e-2). All in all, human exposure to TCE was associated with epigenetic alterations in genes involved in cell-matrix adhesions and interferon subtype expression, which are important in the development of autoimmune diseases; and in genes related to cancer development. These results suggest that DNA methylation may play a role in the pathogenesis of TCE exposure-related diseases and that TCE exposure may contribute to epigenetic drift.
DOI: 10.6084/m9.figshare.11471196
title: MOESM10 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 10: Table S10. Polymorphic molecular marker primer sequences developed between translocation and non-translocation lines.
DOI: 10.6084/m9.figshare.11471196.v1
title: MOESM10 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 10: Table S10. Polymorphic molecular marker primer sequences developed between translocation and non-translocation lines.
DOI: 10.6084/m9.figshare.11471211
title: MOESM1 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 1: Table S1. Summary of the Illumina sequencing data.
DOI: 10.6084/m9.figshare.11471211.v1
title: MOESM1 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 1: Table S1. Summary of the Illumina sequencing data.
DOI: 10.6084/m9.figshare.22752352
title: Studying Between-Subject Differences in Trends and Dynamics: Introducing the Random Coefficients Continuous-Time Latent Curve Model with Structured Residuals

description: The recently proposed <i>continuous-time latent curve model with structured residuals</i> (CT-LCM-SR) addresses several challenges associated with longitudinal data analysis in the behavioral sciences. First, it provides information about process trends and dynamics. Second, using the continuous-time framework, the CT-LCM-SR can handle unequally spaced measurement occasions and describes processes independently of the length of the time intervals used in a given study. Third, it is a hierarchical model. Thus, multiple subjects can be analyzed simultaneously. However, subjects might also differ in dynamics and trends. Therefore, in the present paper, we extend the CT-LCM-SR to capture these differences as well. This newly proposed <i>random coefficients continuous-time latent curve model with structured residuals</i> (RC-CT-LCM-SR) is introduced theoretically and technically. Additionally, we provide an illustrative example with data from the Health and Retirement Study (HRS), and we show how the RC-CT-LCM-SR can be used to study multiple sources of between-subject differences over time.
DOI: 10.6084/m9.figshare.11471217
title: MOESM2 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 2: Table S2. GO enrichment analysis for transcripts expressed in all sampled tissues.
DOI: 10.6084/m9.figshare.11471217.v1
title: MOESM2 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 2: Table S2. GO enrichment analysis for transcripts expressed in all sampled tissues.
DOI: 10.6084/m9.figshare.11471226
title: MOESM3 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 3: Table S3. GO enrichment analysis for transcripts enriched in leaves.
DOI: 10.6084/m9.figshare.11471226.v1
title: MOESM3 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 3: Table S3. GO enrichment analysis for transcripts enriched in leaves.
DOI: 10.21227/zvdq-wd61
title: IEEEXtreme 15: Doctor's Appointments

description: This dataset contains a total of 14105 submissions, with 2% correct solutions and 17% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/appointment/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.11471232
title: MOESM4 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 4: Table S4. GO enrichment analysis for transcripts enriched in stems.
DOI: 10.6084/m9.figshare.11471232.v1
title: MOESM4 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 4: Table S4. GO enrichment analysis for transcripts enriched in stems.
DOI: 10.6084/m9.figshare.11471238
title: MOESM5 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 5: Table S5. GO enrichment analysis for transcripts enriched in roots.
DOI: 10.6084/m9.figshare.11471238.v1
title: MOESM5 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 5: Table S5. GO enrichment analysis for transcripts enriched in roots.
DOI: 10.6084/m9.figshare.17762696
title: AACA-D-21-00020

description: Two datasets were used to verify the idea of this paper as shown in Figure 3. The 3D vector field data is the wind data set in MATLAB, which is the wind field data over America with data size 35x41x15 (longitude-latitude-elevation). The 2D vector field data used in this experiment are the global average monthly wind field data published by the National Oceanic and Atmospheric Administration for the period 1871-2012. The data is organized into temporal and spatial data (longitude-latitude-elevation-time), the data size is 180x91x24x1704. The bottom section (elevation 0) of the wind field in May 1873 is selected as the two-dimensional vector field data with size 180x91.To simulate different levels of data security, here we used three perturbation schemes and four rotation angle schemes. The rotation axis is set to stationary to make the results comparable. The three perturbation vector schemes are (0.1σ,0.3σ), (0.3σ,0.5σ) and (0.5σ,0.7σ); the four rotation angle schemes are (4,6), (9,11), (24,26) and (44,46). The results were saved as out-2D/3D-perturbation scheme ID-angle scheme ID (ID starting from 0). For example, out-3D1-2 means the declassification result of 3D wind field with perturbation vector scheme (0.3σ,0.5σ) and angle scheme (24,26).
DOI: 10.6084/m9.figshare.11471244
title: MOESM6 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 6: Table S6. GO enrichment analysis for transcripts enriched in caryopses.
DOI: 10.6084/m9.figshare.11471244.v1
title: MOESM6 of Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

description: Additional file 6: Table S6. GO enrichment analysis for transcripts enriched in caryopses.