cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/c2cj-c109
title: Flood Response Surge Support for NRRA - Task 4: Economic Value at Risk Assessment Tool

description: NRRA requested surge team to develop a means to produce a defensible, evidence-based estimate of total economic impact of disasters for the recent flood events in Northern NSW and southern Queensland in February and March 2022 . Although the primary objective was to be quantify the total economic impact for the entire flood event, the team developed an approach that would enable estimation of value at risk and value impacted at higher spatial resolution or granularity that could also be used to inform policy and program design. The aim was to develop a minimum viable product (MVP) for immediate use by the NRRA. An approach was developed to estimating economic value at risk for administrative areas and then use flood extent to calculate percent of each administrative area impacted by the hazard, to estimate economic value impacted. Gross Value Added (GVA) by each administrative area (ASGS SA2 level) was selected as the headline economic value at risk figure. The GVA for each administrative area can be aggregated to a headline figure of total economic impact. The approach was intended to be rapid and robust, and to provide a preliminary view of direct impacts soon after a disaster occurs. The outputs include: A) An Economic value-at-risk data stack (including a range of economic data - jobs, productivity by worker, property reconstruction value, inter-regional and sectoral economic activity and built environment data) B) A calculation sheet to calculate value impacted based on value at risk (GVA) and input parameters to quantify hazard within each administration unit Both outputs are contained within a Microsoft Excel document. Acknowledgement: This publication was developed by the CSIRO on behalf of the Australian Climate Service, a Type F Commonwealth entity hosted by the Bureau of Meteorology and delivered through a partnership between the Bureau of Meteorology, Australian Bureau of Statistics, CSIRO and Geoscience Australia. Important disclaimer: CSIRO advises that the information contained in this publication comprises general statements based on scientific research. The reader is advised and needs to be aware that such information may be incomplete or unable to be used in any specific situation. No reliance or actions must therefore be made on that information without seeking prior expert professional, scientific and technical advice. To the extent permitted by law, CSIRO (including its employees and consultants) excludes all liability to any person for any consequences, including but not limited to all losses, damages, costs, expenses and any other compensation, arising directly or indirectly from using this publication (in part or in whole) and any information or material contained in it.
DOI: 10.6084/m9.figshare.20129357
title: FICB I

description: ficb, surgery
DOI: 10.6084/m9.figshare.20409345
title: Predictive metabolic modeling data

description: Experimentally measured metabolite data and predicted metabolite data for human microbiome-associated samples.
DOI: 10.6084/m9.figshare.20409345.v1
title: Predictive metabolic modeling data

description: Experimentally measured metabolite data and predicted metabolite data for human microbiome-associated samples.
DOI: 10.6084/m9.figshare.20129357.v1
title: FICB I

description: ficb, surgery
DOI: 10.6084/m9.figshare.20129357.v2
title: FICB I

description: ficb, surgery
DOI: 10.6084/m9.figshare.20024183
title: EVIDENCE-BASED ONLINE MODEL PROCTORED EXAMINATION

description: This paper describes an innovative method developed to conduct online, synchronous, closed book Professional Exams. The results from the cohort that participated in this exam were used to establish the reliability and validity of this study.
DOI: 10.6084/m9.figshare.20024183.v1
title: Data for Repository.xlsx

description: This paper describes an innovative method developed to conduct online, synchronous, closed book Professional Exams. The results from the cohort that participated in this exam were used to establish the reliability and validity of this study.
DOI: 10.6084/m9.figshare.20479068
title: FICB I

description: ficb 手术
DOI: 10.34740/kaggle/dsv/4060942
title: WallStreetBets 2022
DOI: 10.6084/m9.figshare.20456814
title: PBMCs

description: Single cell gene expression dataset of 10k Human peripheral blood mononuclear cells (PBMCs) processed with Cell Ranker 6.1.0. Cells were annotated using scvi-tools, the original, unlabeled dataset can be found here.
DOI: 10.6084/m9.figshare.19802719.v1
title: Nanoparticle and Antimicrobial data.xlsx

description: Sheet 1 and 2 - Diameter (mm) Shows the 3 trials of the drug sensitivity tests against the five bacteria;<em> K. pnuemonea (KLEB), P. aerugenosa (PA), S. aureaus (SA), S. epidermidis (SE) </em>and<em> E. coli (EC).</em> The drugs tested were as follow; <em>Brachystegia boehmii</em> nanopaticles (BN), <em>B. boehmii</em> water extract (B), <em>B. boehmii </em>methanol extract (BM), <em>B. boehmi</em>i choroform extract (BC) all the results were recorded in millimeters. <br> Sheet 2- UV Results shows the UV-Vis spectra of silver nanoparticles: Green synthesized <em>B. boehmii</em> , <em>X. caffra</em> and Sodium citrate synthesized (Control).
DOI: 10.14469/hpc/10844
title: Oxetane to lactone conversion with inversion, with two formic acids as proton transfer agent, wB97XD/Def2-TZVPP, TS, G = -800.460865 DG = 27.0 kcal/mol

description: Gaussian 16 (C01) calculation
DOI: 10.34740/kaggle/dsv/4061026
title: Kaggle Competition User Rankings
DOI: 10.6084/m9.figshare.20479572
title: Additional file 1 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 1 File S1. Summary of sequence read statistics (number of sequences, number of base pairs, maximum read length, average read length, sum, estimated genome size, and estimated overall sequence depth).
DOI: 10.6084/m9.figshare.20479572.v1
title: Additional file 1 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 1 File S1. Summary of sequence read statistics (number of sequences, number of base pairs, maximum read length, average read length, sum, estimated genome size, and estimated overall sequence depth).
DOI: 10.6084/m9.figshare.20479575.v1
title: Additional file 2 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 2 ∙ ‘notch-related.gtf‘: Independent annotation of genes that belong to the Notch signaling pathway. ∙ ‘repeatMasker.gtf‘: Repeat annotation based on similarity (not included in the gene statistics). ∙ ‘braker.gtf‘: Main gene annotation file produced with the BRAKER pipeline. ∙ ‘exonerate_complete.gtf‘: All hits from exonerate alignments (may include suboptimal hits because it stores the best hit per transcript query, not the best hit per target location). ∙ ‘exonerate_filtered.gtf‘: Filtered results from exonerate with the best hits per target location.
DOI: 10.6084/m9.figshare.20479575
title: Additional file 2 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 2 ∙ ‘notch-related.gtf‘: Independent annotation of genes that belong to the Notch signaling pathway. ∙ ‘repeatMasker.gtf‘: Repeat annotation based on similarity (not included in the gene statistics). ∙ ‘braker.gtf‘: Main gene annotation file produced with the BRAKER pipeline. ∙ ‘exonerate_complete.gtf‘: All hits from exonerate alignments (may include suboptimal hits because it stores the best hit per transcript query, not the best hit per target location). ∙ ‘exonerate_filtered.gtf‘: Filtered results from exonerate with the best hits per target location.
DOI: 10.6084/m9.figshare.20479593
title: Additional file 4 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 4 File S4. Expected C-value variation in echinoderms. Data in this table is reference in our manuscript and is based mainly on information available from the “Animal genome size database” [52].
DOI: 10.6084/m9.figshare.20479593.v1
title: Additional file 4 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

description: Additional file 4 File S4. Expected C-value variation in echinoderms. Data in this table is reference in our manuscript and is based mainly on information available from the “Animal genome size database” [52].
DOI: 10.6084/m9.figshare.20479634
title: Additional file 2 of The telomere maintenance mechanism spectrum and its dynamics in gliomas

description: Additional file 2: Tables S1–S9.
DOI: 10.6084/m9.figshare.20479634.v1
title: Additional file 2 of The telomere maintenance mechanism spectrum and its dynamics in gliomas

description: Additional file 2: Tables S1–S9.
DOI: 10.6084/m9.figshare.20479637
title: Additional file 1 of Outpatient palliative care during the COVID-19 pandemic: a retrospective single centre analysis in Germany

description: Additional file 1.
DOI: 10.6084/m9.figshare.20479637.v1
title: Additional file 1 of Outpatient palliative care during the COVID-19 pandemic: a retrospective single centre analysis in Germany

description: Additional file 1.
DOI: 10.6084/m9.figshare.20479643.v1
title: Additional file 1 of Comparative analyses of chloroplast genomes from Six Rhodiola species: variable DNA markers identification and phylogenetic relationships within the genus

description: Additional file 1: Table S1. Summary of six Rhodiola chloroplast genome characteristics.
DOI: 10.6084/m9.figshare.20479643
title: Additional file 1 of Comparative analyses of chloroplast genomes from Six Rhodiola species: variable DNA markers identification and phylogenetic relationships within the genus

description: Additional file 1: Table S1. Summary of six Rhodiola chloroplast genome characteristics.
DOI: 10.6084/m9.figshare.20479728
title: Additional file 2 of Limited evidence for blood eQTLs in human sexual dimorphism

description: Additional file 2: Table S1. Sex-specific eQTLs. Table S2. Summary statistics for eQTLs in binding sites for estrogen receptor genes. Table S3. Gene level summary statistics. Table S4. Wilcoxon test P-values for mean sex differences in cellular composition. Table S5. Wilcoxon test P-values for mean sex differences in principal components. Table S6. Levene test P-values for mean sex differences before and after correcting for principal components. Table S7. BIOS results for the sex-biased eQTLs found in Yao et al [PMID: 24242183]. Table S8. BIOS results for the sex-biased eQTLs found in Kukurba et al [PMID: 27197214]. Table S9. Replication analyses results - SHIP-Trend cohort. Table S10. PheWAS for top sex-specific eQTLs. Table S11. Independent SNPs associated with WHR. Table S12. Independent SNPs associated with testosterone. Table S13. Sex-stratified TWMR results for testosterone. Table S14. Sex-stratified TWMR results for WHR. Table S15. Sex specific causal genes for WHR and testosterone.
DOI: 10.6084/m9.figshare.20479728.v1
title: Additional file 2 of Limited evidence for blood eQTLs in human sexual dimorphism

description: Additional file 2: Table S1. Sex-specific eQTLs. Table S2. Summary statistics for eQTLs in binding sites for estrogen receptor genes. Table S3. Gene level summary statistics. Table S4. Wilcoxon test P-values for mean sex differences in cellular composition. Table S5. Wilcoxon test P-values for mean sex differences in principal components. Table S6. Levene test P-values for mean sex differences before and after correcting for principal components. Table S7. BIOS results for the sex-biased eQTLs found in Yao et al [PMID: 24242183]. Table S8. BIOS results for the sex-biased eQTLs found in Kukurba et al [PMID: 27197214]. Table S9. Replication analyses results - SHIP-Trend cohort. Table S10. PheWAS for top sex-specific eQTLs. Table S11. Independent SNPs associated with WHR. Table S12. Independent SNPs associated with testosterone. Table S13. Sex-stratified TWMR results for testosterone. Table S14. Sex-stratified TWMR results for WHR. Table S15. Sex specific causal genes for WHR and testosterone.
DOI: 10.6084/m9.figshare.20479757.v1
title: Additional file 1 of Different serotypes of Escherichia coli flagellin exert identical adjuvant effects

description: Additional file 1.
DOI: 10.6084/m9.figshare.20479757
title: Additional file 1 of Different serotypes of Escherichia coli flagellin exert identical adjuvant effects

description: Additional file 1.
DOI: 10.6084/m9.figshare.20479800
title: Additional file 3 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 3.
DOI: 10.6084/m9.figshare.20479800.v1
title: Additional file 3 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 3.
DOI: 10.6084/m9.figshare.20479803
title: Additional file 4 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 4.
DOI: 10.6084/m9.figshare.20479803.v1
title: Additional file 4 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 4.
DOI: 10.6084/m9.figshare.20479806
title: Additional file 5 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 5.
DOI: 10.6084/m9.figshare.20479809
title: Additional file 6 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 6.
DOI: 10.6084/m9.figshare.20479809.v1
title: Additional file 6 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 6.
DOI: 10.6084/m9.figshare.20479806.v1
title: Additional file 5 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa

description: Additional file 5.
DOI: 10.6084/m9.figshare.20479829
title: Additional file 1 of Antibiotic prophylaxis for percutaneous renal biopsy: study protocol for a prospective randomized trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.20479829.v1
title: Additional file 1 of Antibiotic prophylaxis for percutaneous renal biopsy: study protocol for a prospective randomized trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.19802719.v2
title: Nanoparticle and Antimicrobial data.xlsx

description: The Antimicrobial data excel file consists of 2 tabs. The first tab labelled 'Antimicrobial Activity' shows 3 trials of the drug sensitivity tests against the five bacteria;<em> K. pnuemonea (KLEB), P. aerugenosa (PA), S. aureaus (SA), S. epidermidis (SE) </em>and<em> E. coli (EC).</em> The drugs tested were as follow; <em>Brachystegia boehmii</em> nanopaticles (BN), <em>B. boehmii</em> water extract (B), <em>B. boehmii </em>methanol extract (BM),<em> B. boehmii</em> chloroform extract (BC) and the control Ciprofloxacin All the results were recorded in millimeters (mm). <br> The second tab labelled 'UV Results' shows the UV-Vis Absorbance spectra of silver nanoparticles: Green synthesized <em>B. boehmii</em> and Sodium citrate synthesized (Control). <br> The zone of Inhibition diameter analysis .spv file attached is an SPSS statistic output document showing the repeated measures ANOVA used to test for the level of significance for both the treatment trials and the organisms. <br>
DOI: 10.6084/m9.figshare.20308752
title: Supplementary Material for: Augmented vision for dental students’ education in detecting proximal carious lesions on bitewing radiographs: A randomized controlled trial

description: This two-arm, parallel, randomized controlled trial aimed to assess the effect of augmented vision (AV, using interactive color-overlays) on the education of dental students in detecting proximal carious lesions on bitewing radiographs compared to black-and-white textbook-like illustrations. Forty-eight preclinical third-year dental students were randomized using a random number generator into two learning groups: test (AV, allowing interaction with color-highlighted carious lesions, n=24) and control (showing the native radiograph and a black-and-white illustration displaying the carious lesion, n=24). Firstly, students had 2 weeks to assess 50 bitewings (lesion prevalence on tooth level: 54.5%) in test or control. Due to the nature of the intervention participants could not be blinded towards the intervention. After that, they were asked to detect lesions on 10 independent bitewings and to assess lesion extent (outer/inner enamel; outer/middle/inner dentin). The reference test was constituted by two experienced dentists. No significant differences in accuracy (test 0.84 [95% CI 0.79, 0.88]; control 0.83 [0.78,0.87]), AUC (test 0.82 [0.81, 0.84]; control 0.81 [0.80,0.83]) and F1-score (test 0.79 [0.75, 0.82]; control 0.77 [0.72,0.81]) were observed between groups. Students of both groups showed difficulties in differentiating enamel from dentin carious lesions. While AV was reported to be motivating by students, it did not increase their accuracy.
DOI: 10.6084/m9.figshare.20308752.v1
title: Supplementary Material for: Augmented vision for dental students’ education in detecting proximal carious lesions on bitewing radiographs: A randomized controlled trial

description: This two-arm, parallel, randomized controlled trial aimed to assess the effect of augmented vision (AV, using interactive color-overlays) on the education of dental students in detecting proximal carious lesions on bitewing radiographs compared to black-and-white textbook-like illustrations. Forty-eight preclinical third-year dental students were randomized using a random number generator into two learning groups: test (AV, allowing interaction with color-highlighted carious lesions, n=24) and control (showing the native radiograph and a black-and-white illustration displaying the carious lesion, n=24). Firstly, students had 2 weeks to assess 50 bitewings (lesion prevalence on tooth level: 54.5%) in test or control. Due to the nature of the intervention participants could not be blinded towards the intervention. After that, they were asked to detect lesions on 10 independent bitewings and to assess lesion extent (outer/inner enamel; outer/middle/inner dentin). The reference test was constituted by two experienced dentists. No significant differences in accuracy (test 0.84 [95% CI 0.79, 0.88]; control 0.83 [0.78,0.87]), AUC (test 0.82 [0.81, 0.84]; control 0.81 [0.80,0.83]) and F1-score (test 0.79 [0.75, 0.82]; control 0.77 [0.72,0.81]) were observed between groups. Students of both groups showed difficulties in differentiating enamel from dentin carious lesions. While AV was reported to be motivating by students, it did not increase their accuracy.
DOI: 10.14469/hpc/10849
title: Supporting information for A Computational Study of the Nondissociative Mechanisms that Interchange Apical and Equatorial Atoms in Square Pyramidal Molecules, DOI: 10.1021/ic0519988
DOI: 10.6084/m9.figshare.19829473.v1
title: Focusing ATG on Host T-Cell Depletion Prevents Grade III-IV acute GVHD and is Associated with Immune surrogates of GVL

description: Graft versus host disease prevention with ATG
DOI: 10.6084/m9.figshare.19829473
title: Focusing ATG on Host T-Cell Depletion Prevents Grade III-IV acute GVHD and is Associated with Immune surrogates of GVL

description: Graft versus host disease prevention with ATG
DOI: 10.6084/m9.figshare.20017631
title: Therapy-induced senescence promotes breast cancer cells plasticity by inducing Lipocalin-2 expression.

description: Uncropped gels and RNA seq data associated with this manuscript.
DOI: 10.6084/m9.figshare.20375496
title: ESM(eugenol against cancer)_1.pdf

description: Protein-protein interaction, Cytoscape, pathway enrichment
DOI: 10.6084/m9.figshare.20375496.v2
title: ESM(eugenol against cancer)_1.pdf

description: Protein-protein interaction, Cytoscape, pathway enrichment
DOI: 10.6084/m9.figshare.20375496.v1
title: ESM(eugenol against cancer)_1.pdf

description: Protein-protein interaction, Cytoscape, pathway enrichment
DOI: 10.5281/zenodo.6477945
title: Dataset A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN)

description: This dataset gathers synthetic T2-weighted magnetic resonance (MR) images generated using FaBiAN, a Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates fast spin echo (FSE) sequences of the developing fetal brain throughout gestation.<br> This dataset is associated with the following paper:<br> Lajous H. et al. (2022) A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Scientific Reports. https://doi.org/10.1038/s41598-022-10335-4 This dataset provides images simulated by FaBiAN based on the specific implementation of FSE sequences by two MR vendors (Half-Fourier Acquisition Single-shot Turbo spin Echo (HASTE), Siemens Healthcare, and Single-Shot Fast Spin Echo (SS-FSE), GE Healthcare) at 1.5 T or 3 T.<br> Automated brain tissue annotations of the low-resolution series and super-resolution (SR) reconstructions are also included. Works using any of these data should cite the following references:<br> - Lajous, H. et al. A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Scientific Reports (2022). https://doi.org/10.1038/s41598-022-10335-4<br> - Lajous, H., Roy, C. W., Yerly, J. & Bach Cuadra, M. Medical-Image-Analysis-Laboratory/FaBiAN: FaBiAN v1.2 (1.2). Zenodo (2022). https://doi.org/10.5281/zenodo.5471094<br> - Lajous, H. et al. Dataset A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Zenodo (2022). https://doi.org/10.5281/zenodo.6477946 <br> Copyright (c) - All rights reserved. Medical Image Analysis Laboratory - Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland & CIBM Center for Biomedical Imaging. 2022.
description: This work was supported by the Swiss National Science Foundation through grants 182602, 141283 and 173129. We acknowledge the expertise of the CIBM Center for Biomedical Imaging, a Swiss research center of excellence founded and supported by Lausanne University Hospital (CHUV), University of Lausanne (UNIL), Ecole Polytechnique Fédérale de Lausanne (EPFL), University of Geneva (UNIGE) and Geneva University Hospitals (HUG).