cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5127370.v1
title: Supplementary Material for: End-Stage Renal Disease Attributed to Acute Tubular Necrosis in the United States, 2001-2010

description: <b><i>Background/Aims:</i></b> Though end-stage renal disease (ESRD) is increasingly attributed to acute tubular necrosis (ATN), contemporary trends in the rates of incidence and recovery of renal function are poorly defined. Hence, we set out to describe the clinical epidemiology of ESRD due to ATN between 2001 and 2010. <b><i>Methods:</i></b> We examined United States Renal Data System data (n = 1,070,490) for 2001 through 2010 to calculate the incidence rates and rates of renal recovery and death for patients with ESRD due to ATN treated with renal replacement therapy (RRT, n = 27,603). <b><i>Results:</i></b> Standardized incidence ratios increased between 2001-2002 and 2009-2010 in the overall population (ratio 2.14), having risen in all demographic subgroups examined. Recovery of renal function was more likely in patients with ATN than in matched controls (cumulative incidence 23% vs. 2% at 12 weeks, 34% vs. 4% at 1 year), as was death (cumulative incidence 38% vs. 27% at 1 year). Hazards ratios for renal recovery increased stepwise with year of RRT inception to 1.34 (95% confidence interval 1.24-1.45) for 2009-2010 (vs. 2001-2002). In contrast, hazards ratios for death declined stepwise to 0.83 (0.79-0.87) in 2009-2010. <b><i>Conclusion:</i></b> While the incidence of ESRD attributed to ATN has increased, prospects of renal recovery and survival have also increased. Despite substantial mortality risk on RRT, renal recovery is not a rare occurrence.
DOI: 10.6084/m9.figshare.6839993.v1
title: Reproductive success of Anacyclus clavatus and A. valentinus

description: Data set describing floral visitors and reproductive success of the rayed daisy <i>Anacyclus clavatus </i>and the rayless <i>A. valentinus</i> in three sites: i) sympatric, ii) rayed, and iii) rayless site. It also includes a pollen limitation and a ray removal experiment.<br>
DOI: 10.6084/m9.figshare.8298032.v1
title: Supplemental Table 1_IPAH vs Ctrl gene list.xlsx

description: <strong> </strong><strong>Supplemental Table 1_IPAH vs Ctrl gene list</strong><strong> </strong>
DOI: 10.15468/dl.6wh2zm
title: Occurrence Download

description: A dataset containing 1074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ischaemum rugosum Salisb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1074 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013234-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2k536m8r25
title: Total returns for UK Gilt Sectors of Different Maturities from 1870 onwards

description: The total returns, together with yield and duration, of UK gilts sectors (i.e., gilts with maturities under 5 years, from 5 to 15 years, over 15 years, etc.) have been calculated using the historical prices, coupons and amounts outstanding of individual gilts for years since 1870. The full method is described in Stocker A.J. (2024). “Total Returns for UK Gilt Sectors of Different Maturities from 1870 Onwards”, Available at SSRN: https://ssrn.com/abstract=4742450 or http://dx.doi.org/10.2139/ssrn.4742450. A full description of the dataset can be found in the readme.txt file.
DOI: 10.17632/689pm8s7jc
title: Entropy sorting of single cell RNA sequencing data reveals the inner cell mass in the human pre-implantation embryo

description: This repository stores the data and code used to generate the human pre-implantation embryo results in our publication titled, "Entropy sorting of single cell RNA sequencing data reveals the inner cell mass in the human pre-implantation embryo". In this work we present a mathematical framework that we term Entropy Sorting, that allows us to confidently isolate the previously elusive inner cell mass population in single cell RNA sequencing data (scRNA-seq).

The data is subset into four sub folders whose recommended order of usage is as follows:
1. Pre_Implantation_Embryo_Analysis_Code - Contains the code used to generate all the results in our publication. See the README.txt file within this folder for a summary of each workflow provided.
2. Mesitermann_Data - Contains an exact copy of the human pre-implantation embryo scRNA-seq data used in the Mesitermann et al. 2021 publication, which the authors kindly provided to us directly. This dataset was complied from 4 separate scRNA-seq datasets by Mesitermann et al. 2021. See their paper, cited in our publication, for a description of how they complied the 4 datasets. This folder also contains key outputs from the software we present in our work (FFAVES and ESFW), which allows others to re-create the results presented in our publication.
3. Yanagida_Data - An independent human pre-implantation embryo dataset from the Yanagida et al. 2021 paper (GEO ID = GSE171820), which was kindly provided to us by author, alongside a tSNE embedding used in their paper.
4. Nakamura_Data - An independent Macaca embryo dataset from the Nakamura et al. 2016 paper (GEO ID = GSE74767).

We would like to highlight that we have provided exact copies of the pre-implantation human embryo used in the paper to make our work as accessible as possible. However, we recommend that researchers who wish to use the datasets we used in their own work start from the source data (e.g. the Gene Expression Omnibus repositories) to maintain their integrity. Details of each dataset used for this work are provided in the experimental procedures section of our manuscript.
DOI: 10.17632/mg2spfwjb5
title: Overborrowing and Systemic Externalities in the Business Cycle Under Imperfect Information

description: We study the interaction between imperfect information and financial frictions and their role in financial crises in small open economies. We use a model where households observe income growth but cannot distinguish whether the underlying income shocks are permanent or transitory, and borrowing is subject to a collateral constraint. We show that the combination of imperfect information and a borrowing constraint is a significant source of economic instability. Optimal macroprudential policy helps stabilize the economy by actively taxing debt. Furthermore, the interaction between the collateral constraint and the information friction reshapes the correlation between the optimal tax and the underlying components of income.
DOI: 10.17632/vt67fzbv4z
title: Optimal Trade Policy with International Technology Diffusion

description: Replication package for "Optimal Trade Policy with International Technology Diffusion" by Yan Bai, Keyu Jin, Dan Lu, and Hanxi Wang
DOI: 10.6084/m9.figshare.11409429.v1
title: Intraspecific variation in seed traits of Geropogon hybridus

description: Data used in the paper:Variation in morphological traits affects dispersal and seedling emergence in dispersive diaspores of <i>Geropogon hybridus</i><br>American Journal of Botany (AJB-D-19-00308)<i><br></i>
DOI: 10.6084/m9.figshare.12860837.v1
title: GPS data

description: HKPC, HKOH, HKST14 September 2013 to 2 October 2013
DOI: 10.6084/m9.figshare.19497386.v1
title: Raman Spectra (raw files)

description: Enspel and Messel shales, irradiated and controls.<br>
DOI: 10.6084/m9.figshare.24247744.v1
title: China planted forest data

description: The dataset is a subset of the large dataset produced by Tang et al. (2018), including 1928 planted forest sites collected from a national field campaign performed in China in the early 2010s. During the field campaign, the mainland China was first divided into three regions in a standardized, sampling protocol. The sampling protocol was enforced to ensure the forest sites sampled are representative of the distribution, composition, and structure of the forests in China. In each of the three regions, the grid sizes of 100, 400, and 900 km<sup>2</sup> were adopted for tropical/subtropical, temperate, and alpine regions, respectively. Second, 3%–5% of the grids were randomly chosen for the field survey by overlaying the grids and the administrative boundary maps. Third, a 600-1000 m<sup>2</sup> plot was designed for each forest site (i.e. plot) for data sampling. During the field surveying, each plot was further divided into six to ten 10 × 10 m<sup>2</sup> subplots, and the geographical information, forest origin, community type, the diameter at breast height (DBH), and stand age were recorded. For each plot, trees with DBH larger than 5 cm were all measured, and the biomass of each tree was estimated with 158 sets of allometric equations (including each dominant tree species in China). The field sampling was conducted from June to September to minimize bias. By excluding planted forests with missing age information and sites established before 1980, 1928 sites were retained. The dataset was used in this study published in One Earth: "<b>China’s forestation on m</b><b>argi</b><b>nal lands was less efficient in carbon sequestration compared to non-marginal lands</b>"
DOI: 10.6084/m9.figshare.4005129.v1
title: PROBLEMÁTICA AMBIENTAL DEL RÍO MANZANARES Y LA ZONA COSTERA DE CUMANÁ

description: El río Manzanares con sus afluentes constituye una cuenca aislada, perteneciente a la gran cuenca del Caribe (figura 1). Nace en el cerro Turimiqire a una altura superior a 2000 m sobre el nivel del mar y desemboca en la entrada del Golfo de Cariaco, ejerciendo una gran influencia hacia el lado occidental de la costa de Cumaná, la cual se encuentra ubicada entre los 64º 24' latitud Norte, 64º 10' longitud Oeste y los 10º 30' latitud Norte y 64º 20' longitud Oeste. Su hoya hidrógrafica cubre una extensión aproximada de 165.210 hectáreas. Este cuerpo fluvial de gran importancia en la región Nor-Oriental del país, recibe por su margen derecho 9 ríos, 13 riachuelos y quebradas y por el izquierdo 14 ríos principales y 6 secundarios (Senior, 1994). El aporte anual de su escorrentia se estima en 600 millones de m3, la cual se reparte entre la zona del aliviadero, sector donde se produce una gran sedimentación y su desembocadura original, pero en los últimos años (1980-1991), se ha incrementado en más de un 20% (770.689 x 106 m3; (Aguilera,1976; Alvarado, 1976; Senior, 1994; León 1995 ). Las descargas del río Manzanares, originan una pluma laminar cuyos límites forman un sistema frontal. Primordialmente el eje principal de la pluma se orienta hacia el Sur Oeste como consecuencia de la intensidad de los vientos alisios predominantes, sinemabargo en ocasiones durante los períodos prolongados de calma la pluma esta sometida a las fuerzas inerciales producto de la rotación de la tierra. Como resultado, se observa que el eje principal de la pluma se orienta en la dirección Este, penetrando el Golfo de Cariaco. Desde el Distrito Montes, en Cumanacoa el Manzanaaaares acoge de efluentes de las descargas de desechos químicos del central azucarero y de las aguas domésticas de la región que son vertidas al río Guasdua – afluente del Manzanares–. Por otra parte, en su cuenca alta es frecuente la práctica de talas y quemas indiscriminadas con fines agrícolas. Actividades inadecuadas que causan erosión y disminución progresiva del caudal del río en épocas de sequía (Senior, 1994; León., 1995). En las adyacencias de su desembocadura, el Manzanares se encuentran ubicadas una serie de industria y servicios que imponen un fuerte estrés sobre el ecosistema. Asi por ejemplo, se evidencian las descargas líquidas industriales de una procesadora de pescado y los desechos sólidos y líquidos del Mercado Municipal; de igual manera se encuentran una estación de servicios, un astillero naval y una planta de hielo. Esta última utiliza amoniaco durante el proceso de refrigeración. En último término en sus márgenes se encuentran estructuras habitacionales del tipo rancho, que son usadas por un sector humilde de la población en condiciones muy deplorables de insalubridad. Todos los actores arriba mencionados constituyen potenciales fuentes de metales pesados cuyo destino son las aguas del río.
DOI: 10.17632/3kzr8mt8s2
title: Flood Amateur Video for Semantic Segmentation Dataset

description: This dataset is flood data in the city of Parepare, South Sulawesi Province, which contains video data collected from social media Instagram. This dataset was created to develop deep learning methods for recognizing floods and surrounding objects, specializing in semantic segmentation methods. This dataset consists of three folders, namely raw video data collected from Instagram, image data resulting from splitting the video into several images, and annotation data containing images that have been color-labeled according to their objects. There are 6 object classifications based on color labels, namely: floods (blue light), buildings (red), plants (green), people (sage), vehicles (orange), and sky (dark blue). This dataset has data in image (JPEG/PNG) and video (MP4) formats. This dataset is suitable for object recognition tasks with the semantic segmentation method. In addition, because this dataset contains original data in the form of videos and images, it can be developed for other purposes in the future. As a note, if you intend to use this dataset, please ensure that you comply with applicable copyright, privacy, and regulatory requirements. If you intend to read the paper about this dataset, please visit this link: https://doi.org/10.1016/j.dib.2023.109768
DOI: 10.25381/cput.19481114.v1
title: THE USE OF DIGITAL PROJECT MANAGEMENT SOLUTIONS BY PROJECT BUSINESSES: A CASE STUDY OF A SELECTED PLATINUM MINE IN THE LIMPOPO PROVINCE

description: <i>Ethical Clearance</i><i> reference number: </i>2020FOBREC758<br><br> The purpose of this study was to investigate the awareness and adoption levels of digital project management solutions by project businesses at a selected platinum mine in the Limpopo Province. The study further investigated their project management challenges. It examined the impediments of adoption and the readiness of project businesses that had not yet adopted digital project management solutions, to adopt these solutions. The quantitative research survey was distributed and emailed to project businesses at a selected mine in the Limpopo Province, where 110 project businesses participated in this study. SPSS v26.0 software was utilised to process data. The study revealed that the level of awareness of digital project management tools is higher than the level of adoption. It was found that project businesses that have not employed digital project management tools experience several internal challenges, while external challenges were faced by various project businesses. This study identified several barriers which affected project businesses that had not employed digital project management tools, for example, lack of knowledge and the high costs associated with the use of digital project management solutions. These barriers were also identified as factors that affected the readiness of project businesses to adopt digital project management tools. <br> The study proposed several recommendations, including that software developers should consider integrating their software packages with external systems that could enhance project management processes. It was further recommended that the South African mining sector should set a minimum standard requirement of project management training and the South African business development agencies should consider offering ongoing training programmes that are focused on digitalisation and knowledge building in the discipline of project management.
DOI: 10.6084/m9.figshare.13740400.v1
title: Supplements: Blood transcriptome analysis of patients with uncomplicated bacterial infection and sepsis 080221

description: These are supplementary data to our manuscript.<i>ST1_QC_Sepsis_080221.xlsx: </i><i>Quality control of raw reads before trimming, after trimming, uniquely mapped reads and percentage of mapped reads</i><i>ST2_summary_table_080221.xlsx: </i><i>Summary statistics for patient groups</i><i>ST3_Patients_characteristics_080221.xlsx: </i><i>Description of patients characteristics</i><i>S4_Material_Methods_080221.docx: </i><i>Detailed Material and Methods</i><i><br></i><br>
DOI: 10.6084/m9.figshare.24434812.v1
title: Indicators created for the MSF malaria risk study

description: This project encompasses all datasets generated throughout the MSF malaria case study. The entire workflow, from initial data access to the final results, is meticulously documented and openly shared on GitHub. Our scripts are extensively commented and explained line by line to enhance transparency and accessibility, enabling others to easily reuse and build upon our work.
DOI: 10.6084/m9.figshare.5943289.v1
title: Trial Information

description: Information about each trials for every subject. Letters assigned for every trial, please refer to the "Key" tab in the file.
DOI: 10.15468/dl.8v6ze5
title: Occurrence Download

description: A dataset containing 119526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Poa annua L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 119526 records from 511 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013219-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ynb99zjpxh
title: Locust data

description: Two datasets containing 60 locust genera each
DOI: 10.17632/ypc5d397ff
title: Dataset on velocity fields around single and interacting particles sinking in aqueous xanthan gum solutions

description: This dataset contains (1) 2D2C velocity fields around spheres sinking in dispersions of xanthan gum (XG) in distilled water (2) shear and extensional rheological characteristics of these non-Newtonian dispersions. Experiments comprised two test solutions containing 0.75 and 1.25 g/L of XG. The settling of three types of spheres was examined in a settling column using Particle Image Velocimetry (PIV).
DOI: 10.6084/m9.figshare.13270916.v1
title: A real-time approach to diagnose the rice leaf disease using deep learning-based faster R-CNN framework

description: Here three types of rice leaf data have been stored.
DOI: 10.6084/m9.figshare.28906499.v1
title: 3D-GloBFP: the first global three-dimensional building footprint dataset (PART Ⅹ, grid ID: 2300-2599)

description: The 3D Global Building Footprints (3D-GloBFP) dataset is the first global-scale building height dataset at the individual building footprint level for the year 2020, generated through the integration of multisource Earth Observation (EO) data and the extreme gradient boosting (XGBoost) model. The reliability and accuracy of 3D-GloBFP have been validated across 33 subregions, achieving R² values ranging from 0.66 to 0.96 and root-mean-square errors (RMSEs) between 1.9 m and 14.6 m. The dataset is divided into spatial grid-based tiles, each stored as an individual ShapeFile (.shp) containing estimated building heights (in meters) in attribute tables.
DOI: 10.6084/m9.figshare.29145890.v1
title: uspto_model.onnx

description: aizynthfinder python package
DOI: 10.17632/367z8ffpxn
title: Tomtschik et al - Regional Disparities in the Dermatology Workforce (Supplement)

description: Supplementary figures for Tomtschik et al 2022 "Regional Disparities in the Dermatology Workforce: A Longitudinal Analysis of AMA Workforce Data"

Supplemental Figure 1. Dermatologist Density by State (2021). Mapped are dermatologist densities for each US state in 2021. *p<0.01; refers to Moran’s I spatial autocorrelation using dermatologist density from each state.

Supplemental Figure 2. Rural vs. Non-Rural Dermatologist Supply (2006-2017). Shown are numbers of US dermatologists working in rural and non-rural areas from 2006 to 2017. Compound annual growth rates are shown in the figure legend.

Supplemental Figure 3. Dermatology Residency Programs vs. Dermatologists by State (2021). Each point on the plot below represents one US state or the District of Columbia. States are arranged by number of dermatology residency programs (x-axis) vs. number of practicing dermatologists (y-axis). P-value refers to univariate linear regression statistic of the plot points.

All analyses conducted using AMA workforce data.
DOI: 10.17632/7djc6f9ggz
title: Simulated Datas -A Novel Circularly Polarized Microstrip Antenna Design for Ka-Band Bandwidth Enhancement

description: This is a dataset about the manuscript "A Novel Circularly Polarized Microstrip Antenna Design for Ka-Band Bandwidth Enhancement".
DOI: 10.17632/cgd7gv3b85
title: Social learning during human-animal interaction: Effects on broiler chickens' behavior

description: This study aimed to test whether broiler chickens can learn to trust humans through social learning by observing a conspecific receiving gentle handling. Our research hypothesis was that observer chicks exposed to a demonstrator chick receiving positive human interactions would exhibit reduced fear and increased approach behaviors toward humans. Data were collected from 72 one-day-old male Ross 308 broiler chickens, randomly assigned to three treatments: Gentle Handling, Human Presence, and Control. Each treatment had two pens of 12 chicks each.
The experiment spanned from day 1 to day 32 of age. Observer chicks in the Gentle Handling group viewed a demonstrator chick being gently handled by an experimenter twice daily for 15 sessions. The Human Presence group was exposed to the experimenter without interaction, while the Control group received only routine human contact. Behavioral responses toward the experimenter were assessed through a home-pen test on days 31 and 32.
Behavioral measures included time spent near the experimenter, latency to approach, and behaviors such as preening, resting, and alertness. Linear mixed models revealed that chicks from the Gentle Handling group approached the experimenter more quickly, spent more time nearby, and displayed less alert behavior than those in the Human Presence and Control groups. Logistic regression indicated a higher probability of entering the proximal zone for Gentle Handling chicks. These results support the hypothesis that broiler chicks can learn socially from conspecifics and that observing positive human-animal interactions reduces fear. The study suggests a practical welfare approach for poultry management through social learning.
DOI: 10.6084/m9.figshare.11931726.v1
title: Multi-Energy X-ray analysis data

description: CT and radiographic measurements with results of a novel multi energy reconstruction method<br>