cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5648055
title: Effects of intolerance of uncertainty on subjective and psychophysiological measures during threat acquisition and delayed threat extinction

description: This dataset includes measurements of intolerance of uncertainty (Intolerance of Uncertainty Scale [Freeston et al., 1994]), trait anxiety (State-Trait Anxiety Inventory [Spielberger et al., 1983]), skin conductance response (SCR), fear potentiated startle (FPS) and fear ratings (RAT) acquired in a differential fear conditioning paradigm with habituation and threat acquisition training on one day and extinction training, mood induction (by presenting negative vs. neutral slides), re-extinction training, reinstatement and reinstatement-test 24h later. Overall, 66 participants (female = 44, aged between 18 and 40 years, M = 25.76, SD = 5.82) took part in the study. Several participants had to be excluded due to technical issues (n = 3), non-responding (SCR: n = 2; auditory startle blink: n = 1) and no SCRs to the CSs (n = 1). Visual CSs were two shapes resembling snowflakes. The US consisted of a train of three 2 ms electrotactile square-waves (inter stimulus interval, ISI: 50 ms) and was delivered 7.9 s after each CS+ onset (100% reinforcement rate) during threat acquisition training and three times during reinstatement. The duration of the ITIs ranged from 10 to 13 s (M = 11.5). For SCR measurements, a 1 Hz lowpass filter and a gain of 5 or 10 μΩ were applied. SCR data were scored by using the semi-automatic scoring system Autonomate (Green et al., 2014), down sampled to 10 Hz and scored as the first response within 0.9 to 4 s after CS onset as SCR from trough to peak with a maximum rise time of 5 s. SCRs were square root transformed to reduce skew and z-scored within individuals across trials for day 1 and day 2 separately. To elicit the auditory startle blink, a 95 dB white noise burst was presented simultaneously on both ears. Startle probes were administered 6 or 8 s after the ITI-onset and 6 or 7 s after CS-onset. A gain of 5000 at 1000 Hz and a band-pass filter (28–500 Hz) were applied. Data were rectified and integrated online (averaged over 20 samples) and scored semi-automatically by using a custom-made computer program (EDA View, developed by Prof. Dr. Matthias Gamer, University of Würzburg) as trough to peak 20–120 ms after startle probe onset. For analyses, FPS data was z-scored within individuals across trials for day 1 and day 2 separately. To acquire fear ratings, participants rated throughout the experiment, how much stress, fear, and tension they experienced, when they last saw the CSs. Answers had to be logged in via button press within 7 s on a visual analog scale (VAS) ranging from zero (answer = none) to 100 (answer = maximum). Unlogged ratings were considered as missing values.
description: The published article using this dataset can be found in the International Journal of Psychophysiology: https://www.sciencedirect.com/science/article/abs/pii/S016787602200126X. This work was supported by grants awarded by the German Research Foundation to TBL (DFG LO1980/1-1).
DOI: 10.5281/zenodo.5648054
title: Effects of intolerance of uncertainty on subjective and psychophysiological measures during threat acquisition and delayed threat extinction

description: This dataset includes measurements of intolerance of uncertainty (Intolerance of Uncertainty Scale [Freeston et al., 1994]), trait anxiety (State-Trait Anxiety Inventory [Spielberger et al., 1983]), skin conductance response (SCR), fear potentiated startle (FPS) and fear ratings (RAT) acquired in a differential fear conditioning paradigm with habituation and threat acquisition training on one day and extinction training, mood induction (by presenting negative vs. neutral slides), re-extinction training, reinstatement and reinstatement-test 24h later. Overall, 66 participants (female = 44, aged between 18 and 40 years, M = 25.76, SD = 5.82) took part in the study. Several participants had to be excluded due to technical issues (n = 3), non-responding (SCR: n = 2; auditory startle blink: n = 1) and no SCRs to the CSs (n = 1). Visual CSs were two shapes resembling snowflakes. The US consisted of a train of three 2 ms electrotactile square-waves (inter stimulus interval, ISI: 50 ms) and was delivered 7.9 s after each CS+ onset (100% reinforcement rate) during threat acquisition training and three times during reinstatement. The duration of the ITIs ranged from 10 to 13 s (M = 11.5). For SCR measurements, a 1 Hz lowpass filter and a gain of 5 or 10 μΩ were applied. SCR data were scored by using the semi-automatic scoring system Autonomate (Green et al., 2014), down sampled to 10 Hz and scored as the first response within 0.9 to 4 s after CS onset as SCR from trough to peak with a maximum rise time of 5 s. SCRs were square root transformed to reduce skew and z-scored within individuals across trials for day 1 and day 2 separately. To elicit the auditory startle blink, a 95 dB white noise burst was presented simultaneously on both ears. Startle probes were administered 6 or 8 s after the ITI-onset and 6 or 7 s after CS-onset. A gain of 5000 at 1000 Hz and a band-pass filter (28–500 Hz) were applied. Data were rectified and integrated online (averaged over 20 samples) and scored semi-automatically by using a custom-made computer program (EDA View, developed by Prof. Dr. Matthias Gamer, University of Würzburg) as trough to peak 20–120 ms after startle probe onset. For analyses, FPS data was z-scored within individuals across trials for day 1 and day 2 separately. To acquire fear ratings, participants rated throughout the experiment, how much stress, fear, and tension they experienced, when they last saw the CSs. Answers had to be logged in via button press within 7 s on a visual analog scale (VAS) ranging from zero (answer = none) to 100 (answer = maximum). Unlogged ratings were considered as missing values.
description: The published article using this dataset can be found in the International Journal of Psychophysiology: https://www.sciencedirect.com/science/article/abs/pii/S016787602200126X. This work was supported by grants awarded by the German Research Foundation to TBL (DFG LO1980/1-1).
DOI: 10.15454/vwzbuf/0tlbhd
title: Sup_res_1.pdf

description: :unav
DOI: 10.15454/vwzbuf/5kjvjw
title: Table S10 virulence.tab

description: :unav
DOI: 10.15454/vwzbuf/fbrysg
title: Table S7 final.tab

description: :unav
DOI: 10.15454/vwzbuf/iea4i2
title: Table S8 final.tab

description: :unav
DOI: 10.15454/vwzbuf/ysfzoe
title: Table S4.tab

description: :unav
DOI: 10.15454/vwzbuf/0v4zop
title: Table S5 final.tab

description: :unav
DOI: 10.15454/vwzbuf/1jziya
title: Table S6 final.tab

description: :unav
DOI: 10.15454/vwzbuf/1tvpcn
title: Sup_res_2.pdf

description: :unav
DOI: 10.15454/vwzbuf/pqpa9k
title: Table S9 SCFAs.tab

description: :unav
DOI: 10.15454/vwzbuf/tlmoju
title: Table S2.tab

description: :unav
DOI: 10.15454/vwzbuf/totwkq
title: Table S3.tab

description: :unav
DOI: 10.15454/vwzbuf/s98kuj
title: Sup_res_3.pdf

description: :unav
DOI: 10.57745/0ncrsa
title: Table S6 final REV.tab

description: :unav
DOI: 10.57745/ew30kq
title: Table S2_REV.tab

description: :unav
DOI: 10.57745/xryoup
title: Table S3 REV.tab

description: :unav
DOI: 10.57745/zivhyx
title: Table S9 SCFAs REV.tab

description: :unav
DOI: 10.57745/drxnpl
title: categories_samples2

description: intermediate file for analysis using R: contains groups description
DOI: 10.57745/i84zgh
title: Table S4 REV.tab

description: :unav
DOI: 10.57745/nxzkpd
title: Table S8 final REV.tab

description: :unav
DOI: 10.57745/oyvpzz
title: VFdb.VFcorrected.NOT_imputed.fragment.by.length.ratios_130422

description: intermediate file for R analysis: matrix of VFdb features for all samples calculated by KMA and corrected by gene length and total number of features (see manuscript for a full description)
DOI: 10.57745/rvjkis
title: sup_res2-REV.pdf

description: Supplementary results 2: KEGGs and pathways
DOI: 10.57745/ybe01k
title: all.genomic_NOT_imputed.fragment.by.length.ratios_130422

description: intermediate file for R analysis: MAGs compositional matrix for all samples calculated by KMA and corrected by gene length and total number of 16S counts (see manuscript for a full description)
DOI: 10.57745/c7hsar
title: Table S9 REV.tab

description: :unav
DOI: 10.57745/czbfu1
title: MAGs.merged2.all.emapnotations.tbl

description: intermediate file for R analysis; contains all eggNOG annotations for all MAGs
DOI: 10.57745/jxtkit
title: Suppl.Res.1-REV.pdf

description: Supplementary Results 1 - phylogenies
DOI: 10.57745/mpp6s7
title: phylogeny_metainfo4v2

description: intermediate file for R analysis; info on MAGs
DOI: 10.57745/mvhwo6
title: all.genomic.corrected_n_imputed.fragment.by.length.ratios_130422

description: intermediate file for R analysis: MAG compositional matrix for all samples calculated using KMA, corrected by gene length and total number of 16S counts and 0s have been imputed - CLR transformation is recommended before usage (see manuscript for a full description)
DOI: 10.57745/431be0
title: Table S6 final REV.tab

description: :unav
DOI: 10.57745/ja9p83
title: Table S8 final REV.tab

description: :unav
DOI: 10.25345/c5c824r0z
title: MassIVE MSV000092467 - Comparative proteome profiling of uteroplacental tissues using a Data-Independent Acquisition (DIA) approach
title: Human uteroplacental proteomes, namely from myometrium, myometrial arteries and placental arteries, from pregnant women at time of caesarean sections were investigated using a Thermo Orbitrap Exploris 480 mass spectrometer using DIA mode. Raw spectral peaks were analyzed using library-free DIA-NN software.
DOI: 10.3886/e184107
title: Data and Code for: Individuals and Organizations as Sources of State Effectiveness

description: Bureaucrats implement policy. How important are they for a state’s productivity? And do the tradeoffs between policies depend on their effectiveness? Using data on 16 million public purchases in Russia, we show that 39 percent of the variation in prices paid for narrowly defined items is due to the individual bureaucrats and organizations who manage procurement. Low-price buyers also display higher spending quality. Theory suggests that such differences in effectiveness can be pivotal for policy design. To illustrate, we show that a common one---bid preferences for domestic suppliers---substantially improves procurement performance, but only when implemented by ineffective bureaucrats.<br><br>
description: Electronic auction public procurement data from Russia<br>.
DOI: 10.3886/e184107v1
title: Data and Code for: Individuals and Organizations as Sources of State Effectiveness

description: Bureaucrats implement policy. How important are they for a state’s productivity? And do the tradeoffs between policies depend on their effectiveness? Using data on 16 million public purchases in Russia, we show that 39 percent of the variation in prices paid for narrowly defined items is due to the individual bureaucrats and organizations who manage procurement. Low-price buyers also display higher spending quality. Theory suggests that such differences in effectiveness can be pivotal for policy design. To illustrate, we show that a common one---bid preferences for domestic suppliers---substantially improves procurement performance, but only when implemented by ineffective bureaucrats.<br><br>
description: Electronic auction public procurement data from Russia<br>.
DOI: 10.3886/e181583v1
title: Data and Code for: The Micro Anatomy of Macro Consumption Adjustments

description: We study crises characterized by large adjustments of aggregate consumption through their microlevel patterns. We document the cross-sectional patterns of consumption adjustment across the income distribution and find large adjustments for top-income households, who exhibit consumption-income elasticities similar to or larger than the average. We construct a heterogeneous-agent open economy model of consumption under income fluctuations and show that the data patterns are largely consistent with theories that attribute the dynamics of aggregate consumption to changes in aggregate permanent income. We also discuss our findings’ implications for theories based on the tightening of households’ borrowing constraints and analyze policy implications.
DOI: 10.5281/zenodo.7442972
title: GreenVerse Issues Log_ITACA

description: User stories gathered during the "GreenVerse" app pilot. GreenVerse is one of the apps developed as part of the GreenSCENT project.
DOI: 10.5281/zenodo.7442973
title: GreenVerse Issues Log_ITACA

description: User stories gathered during the "GreenVerse" app pilot. GreenVerse is one of the apps developed as part of the GreenSCENT project.
DOI: 10.5281/zenodo.8160175
title: cyathermia_naticoides_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8160174
title: cyathermia_naticoides_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23703663
title: Comparison of NB_wild type vs. AD_wild type (q value of edgeR &lt; 0.01)

description: The list of DE genes sorted by q value of edgeR &lt; 0.01 in comparison of NB_wild type vs. AD_wild type
DOI: 10.6084/m9.figshare.23703663.v1
title: Comparison of NB_wild type vs. AD_wild type (q value of edgeR &lt; 0.01)

description: The list of DE genes sorted by q value of edgeR &lt; 0.01 in comparison of NB_wild type vs. AD_wild type
DOI: 10.5281/zenodo.8146404
title: Vari (Attica) archaeological map

description: The AutoCAD file provides the first accurate archaeological map of the Vari area, SW Attica (Greece). The file includes all pre-Classical archaeological discoveries from Late Bronze Age to the end of the Archaic period (1400-500 BC).
DOI: 10.5281/zenodo.8146403
title: Vari (Attica) archaeological map

description: The AutoCAD file provides the first accurate archaeological map of the Vari area, SW Attica (Greece). The file includes all pre-Classical archaeological discoveries from Late Bronze Age to the end of the Archaic period (1400-500 BC).
DOI: 10.5281/zenodo.8160501
title: phascolosoma_agassizii_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8160500
title: phascolosoma_agassizii_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21507900
title: Data

description: Raw data for cleaning (see code) and analysis (see code)
DOI: 10.6084/m9.figshare.21507900.v1
title: Data

description: Raw data for cleaning (see code) and analysis (see code)
DOI: 10.25345/c57h1dx66
title: MassIVE MSV000092468 - Metabolic profiling stratifies colorectal cancer and reveals adenosylhomocysteinase as a therapeutic target
title: The genomic landscape of colorectal cancer (CRC) is shaped by inactivating mutations in tumour suppressors such as APC, and oncogenic mutations such as mutant KRAS. Here we used genetically engineered mouse models (GEMMs), and multimodal mass spectrometry-based metabolomics to study the impact of common genetic drivers of CRC on the metabolic landscape of the intestine. We show that untargeted metabolic profiling can be applied to stratify intestinal tissues according to underlying genetic alterations, and use mass spectrometry imaging (MSI) to identify tumour, stromal and normal adjacent tissues. By identifying ions that drive variation between normal and transformed tissues, we found dysregulation of the methionine cycle to be a hallmark of APC-deficient CRC. Loss of Apc in the murine intestine was found sufficient to drive expression of one of its enzymes, adenosylhomocysteinase (AHCY), which was also found to be transcriptionally upregulated in human CRC. Targeting of AHCY function impaired growth of APC-deficient organoids in vitro, and prevented the characteristic hyperproliferative/crypt progenitor phenotype driven by acute deletion of Apc in vivo, even in the context of mutant Kras. Finally, pharmacological inhibition of AHCY reduced intestinal tumour burden in ApcMin/+ mice indicating its potential as a metabolic drug target in CRC.
DOI: 10.5519/qd.j30r2vvm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (22 records)
DOI: 10.5281/zenodo.8160566
title: sarracenia_psittacina_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8160565
title: sarracenia_psittacina_decontaminated_gx.fasta.gz

description: .
DOI: 10.5519/qd.b7s0ero7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (239 records)
DOI: 10.5519/qd.rojegvh2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7369 records)
DOI: 10.5519/qd.hv4102c9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (197 records)
DOI: 10.5519/qd.i6l2tlvl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (48 records)
DOI: 10.5281/zenodo.8160640
title: urticina_crassicornis_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8160639
title: urticina_crassicornis_decontaminated_gx.fasta.gz

description: .
DOI: 10.5519/qd.l1has99n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (174 records)
DOI: 10.6084/m9.figshare.23703726
title: Comparison of the NB group (q value of edgeR &lt; 0.01)

description: The list of DE genes sorted by q value of edgeR &lt; 0.01 in comparison of the NB group.
DOI: 10.6084/m9.figshare.23703726.v1
title: Comparison of the NB group (q value of edgeR &lt; 0.01)

description: The list of DE genes sorted by q value of edgeR &lt; 0.01 in comparison of the NB group.
DOI: 10.5281/zenodo.8160393
title: Arc_Width

description: data of arc
DOI: 10.6084/m9.figshare.23703807
title: Comparison of the AD group (q value of edgeR &lt; 0.01)

description: The list of DE genes sorted by q value of edgeR &lt; 0.01 in comparison of the AD group.
DOI: 10.5281/zenodo.8156157
title: A multivariate physiological model of vagus nerve signalling during metabolic challenges in anaesthetised rats for diabetes treatment

description: Raw recordings that support the findings of the paper. In the intact recordings, there may be more than one recoridng corresponding to the same animal. For ligated recordings, odd numbers correspond to efferent and even numbers to afferent recordings.
description: Please contact first author for further instructions to use this dataset if needed.
DOI: 10.5517/ccdc.csd.cc2ck1hh
title: CCDC 2191126: Experimental Crystal Structure Determination

description: Related Article: Michael R. Dworzak, Christine M. Montone, Nicole I. Halaszynski, Glenn P. A. Yap, Christopher J. Kloxin, Eric D. Bloch|2023|Chem.Commun.|59|8977|doi:10.1039/D3CC02015K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ck1jj
title: CCDC 2191127: Experimental Crystal Structure Determination

description: Related Article: Michael R. Dworzak, Christine M. Montone, Nicole I. Halaszynski, Glenn P. A. Yap, Christopher J. Kloxin, Eric D. Bloch|2023|Chem.Commun.|59|8977|doi:10.1039/D3CC02015K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5wq7
title: CCDC 2239989: Experimental Crystal Structure Determination

description: Related Article: Xing Wang, Yanping Zhang, Miao Hong|2023|Polym.Chem.|14|3286|doi:10.1039/D3PY00546A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5wr8
title: CCDC 2239990: Experimental Crystal Structure Determination

description: Related Article: Xing Wang, Yanping Zhang, Miao Hong|2023|Polym.Chem.|14|3286|doi:10.1039/D3PY00546A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5ws9
title: CCDC 2239991: Experimental Crystal Structure Determination

description: Related Article: Xing Wang, Yanping Zhang, Miao Hong|2023|Polym.Chem.|14|3286|doi:10.1039/D3PY00546A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5wvc
title: CCDC 2239993: Experimental Crystal Structure Determination

description: Related Article: Xing Wang, Yanping Zhang, Miao Hong|2023|Polym.Chem.|14|3286|doi:10.1039/D3PY00546A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmzjl
title: CCDC 2253530: Experimental Crystal Structure Determination

description: Related Article: Jiping Du, Hui Li, Tanping Wu, Menglei Wang, Rui Cheng, Di Wu, Yudong Yang, Jingbo Lan|2023|Chem.Commun.|59|8957|doi:10.1039/D3CC01748F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmzkm
title: CCDC 2253531: Experimental Crystal Structure Determination

description: Related Article: Jiping Du, Hui Li, Tanping Wu, Menglei Wang, Rui Cheng, Di Wu, Yudong Yang, Jingbo Lan|2023|Chem.Commun.|59|8957|doi:10.1039/D3CC01748F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fstpr
title: CCDC 2258185: Experimental Crystal Structure Determination

description: Related Article: Kosuke Oki, Wei Zheng, Eiji Yashima, and Tomoyuki Ikai|2023|Chem.Commun.|59|8989|doi:10.1039/D3CC02259E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.