cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3619163_d8.v1
title: Additional file 4: of The hybrid non-ethylene and ethylene ripening response in kiwifruit (Actinidia chinensis) is associated with differential regulation of MADS-box transcription factors

description: Physiology of selected time points for mRNA-Seq, and depth of libraries. (XLSX 1091 kb)
DOI: 10.6084/m9.figshare.c.3619121_d17.v1
title: Additional file 16: Table S7. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: SNP allele frequency correlation with virulence in non-effectors. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3619121_d18.v1
title: Additional file 18: Table S8. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: Effector islands. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3619121_d19.v1
title: Additional file 10: Table S3. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: High confidence effectors. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3619187_d2.v1
title: MOESM1 of Spatial distributions of Anopheles species in relation to malaria incidence at 70 localities in the highly endemic Northwest and South Pacific coast regions of Colombia

description: Additional file 1. a: Localities included in a cross sectional study in Northwest and South Pacific coast regions. b: List of Anopheles specimens using to generate COI sequence and identity percent with COI sequences deposited in GenBank and Boldsystems databases.
DOI: 10.6084/m9.figshare.c.3619121_d22.v1
title: Additional file 14: Table S6. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: Molecular markers of pathotypes Ro1, 4 and 5. (XLSX 24 kb)
DOI: 10.5519/qd.9rrk87z4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (55 records)
DOI: 10.6084/m9.figshare.c.3619121_d23.v1
title: Additional file 9: Table S2. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: Alien indices. (XLSX 81 kb)
DOI: 10.5517/ccdc.csd.cc2fwymx
title: CCDC 2261190: Experimental Crystal Structure Determination

description: Related Article: Jingli Zhang, Zengyu Zhang, Mengrui Su, Xingyu Xu, Rongyao Gao, Bingran Yu, Xiaoyu Yan|2024|Inorg.Chem.|63|22782|doi:10.1021/acs.inorgchem.4c03713
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fwypz
title: CCDC 2261192: Experimental Crystal Structure Determination

description: Related Article: Jingli Zhang, Zengyu Zhang, Mengrui Su, Xingyu Xu, Rongyao Gao, Bingran Yu, Xiaoyu Yan|2024|Inorg.Chem.|63|22782|doi:10.1021/acs.inorgchem.4c03713
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fwyt3
title: CCDC 2261196: Experimental Crystal Structure Determination

description: Related Article: Jingli Zhang, Zengyu Zhang, Mengrui Su, Xingyu Xu, Rongyao Gao, Bingran Yu, Xiaoyu Yan|2024|Inorg.Chem.|63|22782|doi:10.1021/acs.inorgchem.4c03713
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3619418_d2.v1
title: Additional file 10: of Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis â   a rich resource to identify new transcripts, proteins and to study gene regulation

description: Table S12 - Percentages of different types of TSSs above score cut-offs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619424_d1.v1
title: Additional file 3: Table S2. of Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes

description: Identification of differentially displayed proteins in Anopheles albimanus and orthologs in Anopheles darlingi and Drosophila melanogaster. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3619415_d4.v1
title: Additional file 3: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Gene Ontology terms predicted using Metastudent for the novel genes. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3619418_d3.v1
title: Additional file 6: of Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis â   a rich resource to identify new transcripts, proteins and to study gene regulation

description: Annotation file gbk. (ZIP 7457 kb)
DOI: 10.6084/m9.figshare.c.3619415_d6.v1
title: Additional file 1: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Summarized values of PredictProtein for the novel proteins and length-matched annotated proteins. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3619415_d7.v1
title: Additional file 4: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Raw data of PredictProtein for all natural sequences (72 novel and 288 annotated) and their 100-times shuffled counterparts. (XLSX 16697Â kb)
DOI: 10.6084/m9.figshare.c.3619424_d3.v1
title: Additional file 1: Table S1. of Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes

description: Identification of differentially displayed proteins in Anopheles albimanus. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3619418_d5.v1
title: Additional file 8: of Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis â   a rich resource to identify new transcripts, proteins and to study gene regulation

description: Table S7 - Predicted RpoD-like promoters; Table S8 - Predicted promoters with similarity to promoters found upstream of leaderless transcripts; Table S9 - Predicted RpoN-like promoters. (XLS 2957 kb)
DOI: 10.6084/m9.figshare.c.3619415_d8.v1
title: Additional file 7: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Overview of the machine learning results. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3619658_d2.v1
title: Additional file 2: of A toothed turtle from the Late Jurassic of China and the global biogeographic history of turtles

description: Character taxon matrix. (NEX 144 kb)
DOI: 10.6084/m9.figshare.c.3619667_d1.v1
title: MOESM5 of A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

description: Additional File 5. Transposable elements in CEC regions of T. reesei chromosomes.
DOI: 10.6084/m9.figshare.c.3619667_d3.v1
title: MOESM3 of A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

description: Additional file 3. SSCP clusters in T. reesei. * CAZymes are indicated in italics; SSCPs in bold.
DOI: 10.6084/m9.figshare.c.3619667_d4.v1
title: MOESM4 of A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

description: Additional file 4. Putative structure of the two PKS–NRPS products as predicted by antiSMASH [47] (A) and genomic organization of the two telomeric PKS–NRPS clusters (B). Abbreviations used: AT: Acyltransferase; KS: Keto-synthase; KR: Ketoreductase; DH: Dehydratase; cMT: carbon methyltransferase; C, condensation domain; A, activation domain; TD, thioesterase domain. The blue boxed domains do not specify any enzymatic function. R1–R3 in the chemical formulae specify a not-predictable substituent. Genes are indicated by Trire2: IDs, and shown in 5′→ 3′ order.
DOI: 10.6084/m9.figshare.c.3619676_d1.v1
title: Additional file 1: of Concurrent agreement between an anthropometric model to predict thigh volume and dual-energy X-Ray absorptiometry assessment in female volleyball players aged 14-18 years

description: Dataset used in this Research. YT: years of training; ANS: annual number of training sessions; ANG: annual number of games; BM: body mass; H: stature; SKTA: anterior mid-thigh skinfold; SKTP: posterior mid-thigh skinfold; PTL: proximal thigh length; DTL: distal thigh length; TTL: total thigh length; CGF: circumference at the most proximal gluteal furrow (highest possible horizontal circumference); CMT: circumference at the one-third of the subischial height up from the tibial–femoral joint space; CMTC: circumference at the one-third of the subischial height up from the tibial–femoral joint space corrected for subcutaneous adipose tissue thickness; CDT: circumference at the minimum circumference above the patella (distal thigh); TVANTH: thigh volume based on Jones and Pearson; TVANTHFF: fat free volume in the thigh calculated based on Jones and Pearson; TVANTHF: fat volume in the thigh based on Jones and Pearson; DXATV: thigh volume estimated by DXA; DXATVFF: fat free volume in the thigh estimated by DXA; DXATVF: fat volume in the thigh estimated by DXA. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3619667_d5.v1
title: MOESM2 of A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

description: Additional file 2. CAZyme clusters on T. reesei chromosome. * NG: not given for genes located at &gt;200 kb from either chromosomal end.
DOI: 10.6084/m9.figshare.c.3619868_d2.v1
title: Additional file 3: Table S2. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

description: Conserved miRNAs identified in durum wheat Ciccio and Svevo cultivars by Illumina sequencing. MiRNAs were annotated according to miRBase release 21. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3619868_d3.v1
title: Additional file 4: Table S3. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

description: Novel miRNAs from durum wheat identified in durum wheat Ciccio and Svevo cultivars by Illumina sequencing. MiRNAs were predicted in silico using similarity search and secondary structure analyses of putative pre-miRNAs sequences. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3619841_d13.v1
title: Additional file 10: Data S5. of Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin

description: Values to visualize the heat map of Fig. 5a. (TXT 26Â kb)
DOI: 10.6084/m9.figshare.c.3619868_d4.v1
title: Additional file 1: Table S1. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

description: List of primers used for Q-RT-PCR assay for durum wheat miRNAs and their putative target genes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3619841_d15.v1
title: Additional file 5: Data S4. of Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin

description: Cytoscape file of the genetic interaction network of DON and/or TTC sensitive strains based on Constanzo et al., 2008. (CYS 301Â kb)
DOI: 10.6084/m9.figshare.c.3619880_d1.v1
title: Additional file 11: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: List of enriched biological networks for resistant modulators. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3619883_d1.v1
title: Additional file 1: of High prevalence of IgG antibodies to Ebola virus in the EfĂŠ pygmy population in the Watsa region, Democratic Republic of the Congo

description: Efe pygmy, Watsa, DRC: EBOV exposures data. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3619880_d2.v1
title: Additional file 5: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: List of initial modulators for the resistant group. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3619880_d3.v1
title: Additional file 6: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: List of initial modulators for the sensitive group. (TXT 3Â kb)
DOI: 10.6084/m9.figshare.c.3619880_d4.v1
title: Additional file 7: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: Modulator list for the resistant group. (TXT 206 bytes)
DOI: 10.6084/m9.figshare.c.3619874_d4.v1
title: Additional file 5: of Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout

description: Nexus files and align file of phylogenetic networks. (ZIP 894 kb)
DOI: 10.6084/m9.figshare.c.3620069_d2.v1
title: Additional file 1: of TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells

description: List of TET1-bound TEs using either unique or inclusive mapping. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3620063_d3.v1
title: Additional file 7: Table S2. of RNY-derived small RNAs as a signature of coronary artery disease

description: Bioinformatic analysis of the high-throughput small RNAs sequencing of mouse bone marrow-derived macrophages stimulated with macrophage-colony stimulating factor withdrawal (highlighted in pink the RNY-derived small RNAs). (XLS 1017 kb)
DOI: 10.6084/m9.figshare.c.3620063_d5.v1
title: Additional file 10: Table S3. of RNY-derived small RNAs as a signature of coronary artery disease

description: Statistical analysis of the small RNAs expression in human primary macrophages stimulated with staurosporine at the indicated time and in mouse bone marrow-derived macrophages stimulated with macrophage-colony stimulating factor withdrawal and controls. (XLS 911 kb)
DOI: 10.6084/m9.figshare.c.3620069_d4.v1
title: Additional file 4: of TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells

description: Accession numbers of external datasets. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3620063_d6.v1
title: Additional file 6: Tables S1. of RNY-derived small RNAs as a signature of coronary artery disease

description: Bioinformatic analysis of the high-throughput small RNAs sequencing of human primary macrophages stimulated with staurosporine at the indicated time (highlighted in pink the RNY-derived small RNAs). (XLS 1622 kb)
DOI: 10.6084/m9.figshare.c.3620075_d4.v1
title: Additional file 2: Table S2. of Genome-wide association mapping of quantitative traits in a breeding population of sugarcane

description: Dataset of BLUE values obtained for each genotype from model adjusted as described in Methods Section. CY = Cane Yield; SC = Sugar Content. Table S3. Marker dataset for each genotype. (XLSX 520 kb)
DOI: 10.6084/m9.figshare.c.3620063_d7.v1
title: Additional file 4: Table S5. of RNY-derived small RNAs as a signature of coronary artery disease

description: Levels of high sensitive C-reactive protein and s-RNY1-5p in infected and non-infected individuals. Portal of entries and pathogens were identified. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3620090_d1.v1
title: Additional file 1: of Searching for rare diseases in PubMed: a blind comparison of Orphanet expert query and query based on terminological knowledge

description: Contains all the evaluated citation, their metadata and their final evaluation. As authors are French, this file is in French, however, the entire work was performed in English. Column 1 contains the unique disease ID, column 2 the disease name, column 3 the query, column 4 the MeSH level, column 5 the citation PubMed ID, column 6 the final answer for relevance (â  Does the article directly concern the disease?â  ), column 7 the year of publication, column 8 the journal title, column 9 a link toward the citation, column 10 and 11 the two evaluators, column 12 the adjudicator, if any. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3620096_d1.v1
title: Additional file 9: of Repeated cycles of 5-fluorouracil chemotherapy impaired anti-tumor functions of cytotoxic T cells in a CT26 tumor-bearing mouse model

description: Raw data Figure 6B, 6C, and S7 Tumor volumes (Figure 6B), mice survival (Figure 6C) of differently treated groups, namely control, CIK+ Îą PD-L1, 5-FU C4, and C1+ (CIK+ Îą PD-L1); and rechallenge data (Figure S7) of tumor-free mice after chemo-immunotherapy. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3620246_d7.v1
title: Additional file 2 of Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum

description: Fasta file of Final ncRNA candidates on D. vexillum. (PDF 51 kb)
DOI: 10.6084/m9.figshare.c.3620255_d1.v1
title: Additional file 8: of Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves

description: DE miRNA information used for this study. Sheet 1. DE miRNAs in the jejunum. Sheet 2. DE miRNAs in the ileum. (XLSX 13Â kb)
DOI: 10.25378/janelia.24262768
title: Manual organelle segmentations (crop319) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-1)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of extracellular space, plasma membrane, mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, lipid droplet, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver-zon-1 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop319<b>Primary Annotator</b>: Rebecca Vorimo<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<b>Annotated data dimensions (µm)</b>: 1.6 x 1.6 x 1.6 (x, y, z)<b>Annotated data offset (nm)</b>: 16918 x 90982 x 201838 (x, y, z)<b>Classes annotated</b>: extracellular space, plasma membrane, mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, lipid droplet, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop319<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-1<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 397.16 x 171.61 x 188.81 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24128700<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.