cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1061154055
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryo-EM in the Italian Structural Biology community, as in Italy there is no top-end instrument available. The groups in this application have acquired know-how in cryo.EM through international collaborations or by acquiring medium-level in-house equipment. Access to the CM01 beamline at the ESRF has been instrumental for the achievement of high-profile scientific results and publications in top journals. Presently three screening microscopes are available in Italy, these instruments will boost sample production and the number of applications to CM01. Given these premises a BAG from Italian institutions could ensure timely data collection, nurturing the expansion of the field in Italy and a high-level scientific production.
DOI: 10.5281/zenodo.7760609
title: efantnu/drep-2021-collab-MINESParisTech-NTNU: Pre-print version IEEE Access

description: This repository contains the data sets of the paper "Allocation of spinning reserves in autonomous grids considering frequency stability constraints and short-term solar power variations" authored by Erick F. Alves, Louis Polleux, Gilles Guerassimoff, Magnus Korpås, Elisabetta Tedeschi. With these files, it is possible to reproduce most simulations and results obtained in the paper. Folder organization Results: final results and values of intermediate steps of the optimization model implemented in Gurobi 9.1 and described in section III-A and III-B of the paper. Validation: test system implemented in OpenModelica for validation of the results and described in section III-C of paper. Solar convex hulls: hourly convex hulls obtained using the procedure detailed in Appendix A. Solar irradiance profiles: high-resolution irradiance timeseries from NREL used to identify the worst-case solar PV ramp scenarios.
DOI: 10.5281/zenodo.6334799
title: efantnu/drep-2021-collab-MINESParisTech-NTNU: Pre-print version IEEE Access

description: This repository contains the data sets of the paper "Allocation of spinning reserves in autonomous grids considering frequency stability constraints and short-term solar power variations" authored by Erick F. Alves, Louis Polleux, Gilles Guerassimoff, Magnus Korpås, Elisabetta Tedeschi. With these files, it is possible to reproduce most simulations and results obtained in the paper. Folder organization Results: final results and values of intermediate steps of the optimization model implemented in Gurobi 9.1 and described in section III-A and III-B of the paper. Validation: test system implemented in OpenModelica for validation of the results and described in section III-C of paper. Solar convex hulls: hourly convex hulls obtained using the procedure detailed in Appendix A. Solar irradiance profiles: high-resolution irradiance timeseries from NREL used to identify the worst-case solar PV ramp scenarios.
DOI: 10.34992/qp1r-8s13
title: National Ecological Framework for Canada: Terrestrial Ecozones
DOI: 10.34992/samf-t878
title: Clip of Lake Winnipeg Watershed from Atlas of Canada
DOI: 10.34992/bdqb-5y81
title: Ecoatlas: The State of Canada's Ecosystems in Maps - Archived
DOI: 10.34992/a3wb-e624
title: Ecodistrict data explanation
DOI: 10.6084/m9.figshare.22226239.v2
title: Data from: Impacts of ocean acidification and warming on post-larval growth and metabolism in two populations of the great scallop (Pecten maximus L.)

description: Data from experiments carried out with French and Norwegian <em>Pecten maximus</em> spat. The aim of the experiment was to identify differential effects of ocean acidification and warming on protein abundance, metabolism and growth phenotypes in these two populations. The following files are included: Appendix_impacts-climate-stress-scallop_230322.pdf Additional figures including image of experimental setup, example images for survival and shell height data, and annotated gel images showing actin, myosin and paramyosin spots. <br> Pmaximus_survdata_221201_random.csv Mortality data. Data for French spat, which were more numerous, were randomly downsampled to ensure similar statistical power between populations. <br> Pmaximus_phenodata_221201.csv Shell height, shell weight, body weight, and condition index <br> Pmaximus_metabolicdata_210316.csv Oxygen consumption <br> Pmaximus_proteodata_samespots_180109.csv Spot sizes following image analysis with samespots Fr_...tif + No_...tif All 32 images of 2D gels. File names indicate: population_temperature-pH_batch_ID
DOI: 10.6084/m9.figshare.22226239.v1
title: Impacts of ocean acidification and warming on post-larval growth and metabolism in two populations of the great scallop (Pecten maximus L.)

description: Data from experiments carried out with French and Norwegian <em>Pecten maximus</em> spat. The aim of the experiment was to identify differential effects of ocean acidification and warming on protein abundance, metabolism and growth phenotypes in these two populations. The following files are included: Appendix_impacts-climate-stress-scallop_230322.pdf Additional figures including image of experimental setup, example images for survival and shell height data, and annotated gel images showing actin, myosin and paramyosin spots. <br> Pmaximus_survdata_221201_random.csv Mortality data. Data for French spat, which were more numerous, were randomly downsampled to ensure similar statistical power between populations. <br> Pmaximus_phenodata_221201.csv Shell height, shell weight, body weight, and condition index <br> Pmaximus_metabolicdata_210316.csv Oxygen consumption <br> Pmaximus_proteodata_samespots_180109.csv Spot sizes following image analysis with samespots Fr_...tif + No_...tif All 32 images of 2D gels. File names indicate: population_temperature-pH_batch_ID
DOI: 10.5281/zenodo.7760579
title: Meta-analysis of diurnal transcriptomics in mouse liver reveals low repeatability of rhythm analyses

description: The accumulation of public transcriptomic timeseries data enables robust meta-analyses that were not possible until recently. To assess the consistency of biological rhythms across studies, 57 public mouse liver tissue timeseries totaling 1096 RNA-seq samples were obtained and analyzed. Only the control groups of each study were included, to create comparable data. Technical factors in RNA-seq library preparation were the largest contributors to transcriptome-level differences, beyond biological or experiment-specific factors such as lighting conditions. Core clock genes were remarkably consistent in phase across all studies. Overlap of genes identified as rhythmic across studies was generally low, with no pair of studies having over 60% overlap. Distributions of phases of significant genes were remarkably inconsistent across studies, but the genes that consistently identified as rhythmic had acrophase clustering near ZT0 and ZT12. Despite the discrepancies between single-study analyses, cross-study analyses found substantial consistency. Running compareRhythms on each pair of studies identified a median of only 11% of the identified rhythmic genes as rhythmic in only one of the two studies. Data was integrated across studies in a JIVE analysis, which showed that the top two components of joint within-study variation are determined by time of day. A shape-invariant model with random effects was fit to the genes to identify the underlying shape of the rhythms, consistent across all studies, including identifying 72 genes with consistently multiple peaks.<br> <br> This dataset accumulates the quantified values from the 1096 samples along with the sample and study meta-data, and the results of JTK and BooteJTK methods run on each of the individual studies. It also includes the spline-fit curves results from the Shape Invarient Models (SIM).
description: Refer to README.txt for file content descriptions. A prior version with fewer studies and analyses is available at https://www.biorxiv.org/content/10.1101/2022.06.22.497209v1
DOI: 10.5281/zenodo.7760578
title: Meta-analysis of diurnal transcriptomics in mouse liver reveals low repeatability of rhythm analyses

description: The accumulation of public transcriptomic timeseries data enables robust meta-analyses that were not possible until recently. To assess the consistency of biological rhythms across studies, 57 public mouse liver tissue timeseries totaling 1096 RNA-seq samples were obtained and analyzed. Only the control groups of each study were included, to create comparable data. Technical factors in RNA-seq library preparation were the largest contributors to transcriptome-level differences, beyond biological or experiment-specific factors such as lighting conditions. Core clock genes were remarkably consistent in phase across all studies. Overlap of genes identified as rhythmic across studies was generally low, with no pair of studies having over 60% overlap. Distributions of phases of significant genes were remarkably inconsistent across studies, but the genes that consistently identified as rhythmic had acrophase clustering near ZT0 and ZT12. Despite the discrepancies between single-study analyses, cross-study analyses found substantial consistency. Running compareRhythms on each pair of studies identified a median of only 11% of the identified rhythmic genes as rhythmic in only one of the two studies. Data was integrated across studies in a JIVE analysis, which showed that the top two components of joint within-study variation are determined by time of day. A shape-invariant model with random effects was fit to the genes to identify the underlying shape of the rhythms, consistent across all studies, including identifying 72 genes with consistently multiple peaks.<br> <br> This dataset accumulates the quantified values from the 1096 samples along with the sample and study meta-data, and the results of JTK and BooteJTK methods run on each of the individual studies. It also includes the spline-fit curves results from the Shape Invarient Models (SIM).
description: Refer to README.txt for file content descriptions. A prior version with fewer studies and analyses is available at https://www.biorxiv.org/content/10.1101/2022.06.22.497209v1
DOI: 10.5281/zenodo.7738326
title: Alelaimat Chemistry Laboratory

description: This is my own trademark for my organization Alelaimat Chemistry Laboratory.
DOI: 10.5281/zenodo.7738325
title: Alelaimat Chemistry Laboratory

description: This is my own trademark for my organization Alelaimat Chemistry Laboratory.
DOI: 10.5281/zenodo.6868405
title: Neural network models for processing of ultrasound rodents recordings

description: Neural network models for processing of ultrasound rodents recordings to be used with custom software dedicated to detection and classification of USV.
description: The work was funded by grant no. 2019/34/E/ST2/00457 of the National Science Centre, Poland and the Priority Research Area Digiworld under the program Excellence Initiative – Research University at the Jagiellonian University in Cracow.
DOI: 10.5281/zenodo.6868406
title: Neural network models for processing of ultrasound rodents recordings

description: Neural network models for processing of ultrasound rodents recordings to be used with custom software dedicated to detection and classification of USV.
description: The work was funded by grant no. 2019/34/E/ST2/00457 of the National Science Centre, Poland and the Priority Research Area Digiworld under the program Excellence Initiative – Research University at the Jagiellonian University in Cracow.
DOI: 10.34992/nd45-e574
title: Ecoprovinces are a subdivision of an ecozone
DOI: 10.34992/ayg3-wx34
title: Identifying Minimum Sets of Conservation Sites for Representing Biodiversity in Canada: A Complementary Approach
DOI: 10.34992/5qxz-rw78
title: Lake Winnipeg Outline
DOI: 10.25824/redu/2lqd2l
title: Estudo do conjunto dos deputados estaduais eleitos em 2014.xlsx
DOI: 10.25824/redu/icmqkz
title: Estudo do conjunto dos deputados estaduais eleitos em 2014

description: Esta pesquisa envolveu a análise dos perfis socioeconômicos e de parentesco dos 1.059 parlamentares eleitos para a Legislatura 2015-2019 do conjunto das 26 Assembleias Legislativas e da Câmara Legislativa do Distrito Federal (CLDF), com ênfase nas deputadas do gênero feminino, com o intuito de delinear os perfis singulares de acesso a estes cargos eletivos e observando possíveis constrangimentos para se alcançar uma maior paridade de gênero entre os eleitos. De maneira central, procurou-se demonstrar que os tipos de capital político identificados nos parlamentares pode ser compreendido em quatro dimensões principais: (1) capital institucional – trajetória política formada dentro dos partidos políticos e/ou pelo exercício de mandatos eletivos anteriores; (2) capital familiar – parentesco com outros políticos; (3) capital econômico – concentração elevada de patrimônio; e (4) capital midiático – vínculo com os meios de comunicação e/ou propriedade de concessões públicas de rádio e televisão. Assim, para o levantamento destes perfis sócio-políticos recorreu-se aos dados de “Divulgação de Candidaturas e de Contas Eleitorais”, sistema do Tribunal Superior Eleitoral (TSE) que reúne as informações sobre os candidatos com registro deferido na Justiça Eleitoral, as informações sobre as suas contas eleitorais e a relação detalhada dos valores em dinheiro, dos investimentos e das propriedades em nome próprio do parlamentar para obter as declarações de bens prestadas durante as candidaturas dos deputados e deputadas. Para o recolhimento de dados referentes aos órgãos de direção dos partidos políticos e de seus integrantes, utilizou-se o “Sistema de Gerenciamento de Informações Partidárias” (SGIP), ferramenta desenvolvida pela Secretaria de Tecnologia da Informação do TSE, que permite elucidar vínculos internos vigentes ou anteriores da parlamentar dentro dos organogramas partidários. Para verificar a relação de proprietários e sócios das concessões públicas de rádio e televisão, extraiu-se as informações do “Sistema de Acompanhamento de Controle Societário (SIACCO), gerenciado pela Agência Nacional de Telecomunicações (Anatel) em parceria com a Secretaria de Radiodifusão do Ministério das Comunicações (MiniCom), voltado à divulgação das informações referentes a sócios e dirigentes das empresas prestadoras de serviços de radiodifusão e de telecomunicações no país. As demais informações sobre as biografias individuais, vida profissional ou trajetória política foram obtidas com o apoio dos respectivos sites das Assembleias Legislativas, dos sites das legendas partidárias e do próprio site dos parlamentares, quando disponíveis, além de informações divulgadas por outros meios oficiais de comunicação e de imprensa. Assim, os dados aqui depositados representam o compilado das informações coletadas durante o processo de pesquisa.
DOI: 10.5281/zenodo.7760820
title: qepsilon LDDT model

description: This repo contains the best model with respect to LDDT scores for qepsilon
DOI: 10.5281/zenodo.7760819
title: qepsilon LDDT model

description: This repo contains the best model with respect to LDDT scores for qepsilon
DOI: 10.6084/m9.figshare.22318048
title: raw data

description: Ethylene is an important gaseous plant hormone involved in regulating multiple aspects of plant development
DOI: 10.6084/m9.figshare.22318048.v1
title: raw data

description: Ethylene is an important gaseous plant hormone involved in regulating multiple aspects of plant development
DOI: 10.34992/3y7q-s133
title: Shape clip of Ecodistricts for the Lake Winnipeg Watershed
DOI: 10.34992/p32j-jj48
title: Shape clip of Ecoprovinces for the Lake Winnipeg Watershed
DOI: 10.6084/m9.figshare.6105131
title: Additional file 3: of Magnitude and factors associated with adherence to Iron-folic acid supplementation among pregnant women in Eritrean refugee camps, northern Ethiopia

description: The minimal anonymized quantitative data used for analysis. (ZIP 17 kb)
DOI: 10.6084/m9.figshare.6105131.v1
title: Additional file 3: of Magnitude and factors associated with adherence to Iron-folic acid supplementation among pregnant women in Eritrean refugee camps, northern Ethiopia

description: The minimal anonymized quantitative data used for analysis. (ZIP 17 kb)
DOI: 10.6084/m9.figshare.6105122
title: Additional file 3: of The phenotype control kernel of a biomolecular regulatory network

description: The controlled state space has multiple attractors which have the desired value. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.6105122.v1
title: Additional file 3: of The phenotype control kernel of a biomolecular regulatory network

description: The controlled state space has multiple attractors which have the desired value. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.6105101
title: Additional file 2: of The phenotype control kernel of a biomolecular regulatory network

description: The update rules of the MAPK network model, its simplified update rules and attractors of the model. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6105101.v1
title: Additional file 2: of The phenotype control kernel of a biomolecular regulatory network

description: The update rules of the MAPK network model, its simplified update rules and attractors of the model. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6105080
title: Additional file 2: of TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

description: Table S2. Details of motif occurrence comparison between web-based motif discovery software. The highest scoring motifs discovered in DREME, MEME, RSAT peak-motifs, and TrawlerWeb and their corresponding occurrences are illustrated here. For the highest scoring motif, the number of motif occurrences were expressed as a percentage of the total number of input sequences. *MEME-ChIP pre-processes submitted sequences longer than 100 by trimming them evenly from both ends to get the centered 100Â bp sequence and discards trimmed sequences containing only Ns from repeat masking. **MEME motif discovery automatically limits the run to a randomly sampled 600 sequences to reduce run time. (XLSX 576Â kb)
DOI: 10.6084/m9.figshare.6105080.v1
title: Additional file 2: of TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

description: Table S2. Details of motif occurrence comparison between web-based motif discovery software. The highest scoring motifs discovered in DREME, MEME, RSAT peak-motifs, and TrawlerWeb and their corresponding occurrences are illustrated here. For the highest scoring motif, the number of motif occurrences were expressed as a percentage of the total number of input sequences. *MEME-ChIP pre-processes submitted sequences longer than 100 by trimming them evenly from both ends to get the centered 100Â bp sequence and discards trimmed sequences containing only Ns from repeat masking. **MEME motif discovery automatically limits the run to a randomly sampled 600 sequences to reduce run time. (XLSX 576Â kb)
DOI: 10.6084/m9.figshare.6105068
title: Additional file 1: of TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

description: Table S1. Details of the assessment of TrawlerWeb. Detailed table of Fig.Â 1b showing, for each ChIP experiment, the ability of individual programs to uncover the correct binding site in yeast. For each individual ChIP experiment, the success or failure of 8 different algorithms including TrawlerWeb is shown. The results from the 6 algorithms (Coverage, AlignACE, Kellis, mdscan, MEME, and MEME-c) were extracted from Harbison et al. 2004 [38]. The matching motifs found by TrawlerWeb are identical to that found by Trawler_standalone (detailed previously in Ettwiller et al. 2007 [5]). The results from RSAT were performed by this study, where the matching motifs found by RSAT were described in the last column. (XLSX 190Â kb)
DOI: 10.6084/m9.figshare.6105068.v1
title: Additional file 1: of TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

description: Table S1. Details of the assessment of TrawlerWeb. Detailed table of Fig.Â 1b showing, for each ChIP experiment, the ability of individual programs to uncover the correct binding site in yeast. For each individual ChIP experiment, the success or failure of 8 different algorithms including TrawlerWeb is shown. The results from the 6 algorithms (Coverage, AlignACE, Kellis, mdscan, MEME, and MEME-c) were extracted from Harbison et al. 2004 [38]. The matching motifs found by TrawlerWeb are identical to that found by Trawler_standalone (detailed previously in Ettwiller et al. 2007 [5]). The results from RSAT were performed by this study, where the matching motifs found by RSAT were described in the last column. (XLSX 190Â kb)
DOI: 10.6084/m9.figshare.6105065
title: Additional file 10: of The phenotype control kernel of a biomolecular regulatory network

description: Two converging trees of the simplified cancer cell signaling network. One is for a single phenotype node and the other for multiple phenotype nodes. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6105065.v1
title: Additional file 10: of The phenotype control kernel of a biomolecular regulatory network

description: Two converging trees of the simplified cancer cell signaling network. One is for a single phenotype node and the other for multiple phenotype nodes. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6104912
title: The political agenda-setting power of the media: the Europeanization nexus

description: Previous studies have demonstrated that the extent to which media coverage influences the issue priorities of policy-makers is contingent on the type of issues, media, and political agendas. This article contributes to this literature by elaborating on a factor that has been surprisingly neglected so far: the domestic or Europeanized character of the political issue covered in the news. Empirically, we apply time-series cross-section analyses to a dataset on media and parliamentary agendas during the years 1995–2003 in Switzerland. We find that the media’s political agenda-setting power mainly stems from news coverage of domestic issues. News on Europeanized issues have a weak impact on so-called symbolic parliamentary agendas, and no impact at all on the more substantial parliamentary agendas that may initiate decision-making processes.
DOI: 10.6084/m9.figshare.6104912.v1
title: The political agenda-setting power of the media: the Europeanization nexus

description: Previous studies have demonstrated that the extent to which media coverage influences the issue priorities of policy-makers is contingent on the type of issues, media, and political agendas. This article contributes to this literature by elaborating on a factor that has been surprisingly neglected so far: the domestic or Europeanized character of the political issue covered in the news. Empirically, we apply time-series cross-section analyses to a dataset on media and parliamentary agendas during the years 1995–2003 in Switzerland. We find that the media’s political agenda-setting power mainly stems from news coverage of domestic issues. News on Europeanized issues have a weak impact on so-called symbolic parliamentary agendas, and no impact at all on the more substantial parliamentary agendas that may initiate decision-making processes.