cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/n89gm-dke74
title: NLBi Fixed 293T

description: NLBi, wild type, WT, fixed, 1% formaldehyde, 293T
description: <strong>Tilt Series Date:</strong> 2014-03-08</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-9/rawdata/</p>L012_2_NLBifixed_293t0007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-9/rawdata/L012_2_NLBifixed_293t0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        L012_2_NLBifixed_293t0007_part121_62.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-9/3dimage_39828/L012_2_NLBifixed_293t0007_part121_62.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vqhwt-ezy06
title: NLdeltaNefBi Fixed 293T

description: deltanef, fixed, 1% formaldehyde, 293T
description: <strong>Tilt Series Date:</strong> 2014-03-09</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-58.0°, 58.0°), step: 1.0°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-09-30/rawdata/</p>L014_3_NLdeltanefBifixed_293t0007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-09-30/rawdata/L014_3_NLdeltanefBifixed_293t0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        L014_3_NLdeltanefBifixed_293t0007_part117_3.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-09-30/3dimage_39877/L014_3_NLdeltanefBifixed_293t0007_part117_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sp821-3z587
title: R. sphaeroides Cryosections

description: R. sphaeroides Cryosections strain 593
description: <strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-53/rawdata/</p>rhodosectionsatlas10060.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-53/rawdata/rhodosectionsatlas10060.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodosectionsatlas10060_full.rec,  Reconstruction (Pixel Size 0.64 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-53/3dimage_33141/rhodosectionsatlas10060_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x4t7s-xw376
title: Protochlamydia amoebophila Cryosections

description: Cryosections of infected amoeba cells
description: <strong>Tilt Series Date:</strong> 2012-03-30</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Protochlamydia amoebophila</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Matthias Horn</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cryosections</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-30/rawdata/</p>10012012_CS_S6_00024.st,  Tilt Series (Pixel Size 1.23 nm), 586.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-30/rawdata/10012012_CS_S6_00024.st"
        > <i class="download icon"></i> Download </a></p>

        10012012_CS_S6_00024.rec,  Reconstruction (Pixel Size 1.23 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-30/3dimage_31765/10012012_CS_S6_00024.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0tntb-4xw80
title: dK203 5h induced

description: dK203 is the dQ167 strain in which dK has also been additionally deactivated. The strain is only inducible for dQ
description: <strong>Tilt Series Date:</strong> 2014-12-21</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Arash Komeili</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-15/rawdata/</p>dK5hinduced_atlas50017.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-15/rawdata/dK5hinduced_atlas50017.mrc"
        > <i class="download icon"></i> Download </a></p>

        dK5hinduced_atlas50017_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-15/3dimage_49888/dK5hinduced_atlas50017_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xm0nt-6xg80
title: Methanoregula formicica

description: Methanoregula formicica
description: <strong>Tilt Series Date:</strong> 2014-06-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Methanoregula formicica</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  aba2014-06-17-9_slicer4011.jpg: filament/tube M. formicia
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-17-9/rawdata/</p>formicia6cell0003.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-17-9/rawdata/formicia6cell0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        formicia6cell0003_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-17-9/3dimage_43647/formicia6cell0003_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ghmx0-fx020
title: magnetosome induced t0.5

description: Raw data files of magnetosome induced t0.5
description: <strong>Tilt Series Date:</strong> 2014-06-19</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  psa2014-06-19-30_slicer9578.jpg: magnetospirillum magneticum .  polysome
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-06-19-30/rawdata/</p>atlas70005.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-06-19-30/rawdata/atlas70005.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas70005_full.rec,  Reconstruction (Pixel Size 2.4 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-06-19-30/3dimage_43808/atlas70005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t5ajg-5wy92
title: R. sphaeroides Cryosections

description: Strain JPA 543 cryosections
description: <strong>Tilt Series Date:</strong> 2013-07-26</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Mark Ladinsky, Judy Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-52/rawdata/</p>rhodobactertestb0020.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-52/rawdata/rhodobactertestb0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodobactertestb0020_part61_20.rec,  Reconstruction (Pixel Size 0.52 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-52/3dimage_29021/rhodobactertestb0020_part61_20.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7x54k-13m66
title: NLdeltaNefBi Fixed 293T

description: NLdeltaNefBi, fixed, 293T
description: <strong>Tilt Series Date:</strong> 2014-07-04</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-07-04-5/rawdata/</p>L027_2_deltaNefBi_293T_fixed_bt2_New0004.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-07-04-5/rawdata/L027_2_deltaNefBi_293T_fixed_bt2_New0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        L027_2_deltaNefBi_293T_fixed_bt2_New0004_full.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-07-04-5/3dimage_44367/L027_2_deltaNefBi_293T_fixed_bt2_New0004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2f7wt-y7491
title: HUVECs 24h PI pNLBglI

description: Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection
description: <strong>Tilt Series Date:</strong> 2013-05-09</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-05-09-10/rawdata/</p>C161-4a0007.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-05-09-10/rawdata/C161-4a0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        C161-4a0007_full.rec,  Reconstruction (Pixel Size 2.4 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-05-09-10/3dimage_26677/C161-4a0007_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hd7ac-g3591
title: AZ21

description: Caulobacter crescentus CB15N with inframe deletion of all three lytic transglycosylases
description: <strong>Tilt Series Date:</strong> 2013-09-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in PYE</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-18/rawdata/</p>CaulobacterAZ2122mag0018.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-18/rawdata/CaulobacterAZ2122mag0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        CaulobacterAZ2122mag0018_part121_5.rec,  Reconstruction (Pixel Size 0.96 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-18/3dimage_31253/CaulobacterAZ2122mag0018_part121_5.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v6h72-b0j98
title: Peg4Q

description: PEG4Q:       Tar CF 4Q/CheA/CheW complexes (with excess Che A and Che W) with PEG8000/trehalose mediating complex assembly
description: <strong>Tilt Series Date:</strong> 2013-07-25</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -4.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-25-15/rawdata/</p>PEG4Q4micron50degree0015.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-25-15/rawdata/PEG4Q4micron50degree0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        PEG4Q4micron50degree0015_part67_3.rec,  Reconstruction (Pixel Size 0.52 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-25-15/3dimage_28677/PEG4Q4micron50degree0015_part67_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/841j9-5qx36
title: Vibrio harveyi

description: Vibrio harveyi delta luxN delta luxQ delta cqss
description: <strong>Tilt Series Date:</strong> 2013-12-25</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio harveyi</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kirsten Jung</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in AB medium</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-25-14/rawdata/</p>VibrioHBB120delta0014.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-25-14/rawdata/VibrioHBB120delta0014.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioHBB120delta0014_part121_4.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-25-14/3dimage_36583/VibrioHBB120delta0014_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/bhb1t-vx250
title: NLBi Fixed 293T

description: wild type, 293T, fixed
description: <strong>Tilt Series Date:</strong> 2014-07-03</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-07-03-7/rawdata/</p>L025_3_NLBi_293T_fixed0007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        L025_3_NLBi_293T_fixed0007_part121_17.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
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DOI: 10.5281/zenodo.16946117
title: Surface ocean metatranscriptome high-resolution time series from InVirT-19-BATS

description: This resource contains data originating from the JGI project, "Inferring virus-host interactions through multi-omics high-resolution time series" (see award and files). The sequencing project was part of the NSF project, "InVirT-19-BATS": "Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses," which involved sample collection in the vicinity of the Bermuda Atlantic Time Series (BATS) in October 2019 (see the BCO-DMO project page).

img_data_integration.md explains files in this record and shows how they were generated, including code which can be run as a reproducible workflow.

img_data.tsv.gz contains gene-level data from assembled metatranscriptomic transcripts. The table merges data products generated by the JGI IMG Annotation Pipeline (v5.0.23). The table includes 35 surface ocean metatranscriptomic samples with sample metadata and CTD data.

INVIRT19_metaT_metadata.txt contains metatranscriptomic sample metadata provided by Daniel Muratore that also applies to the samples in the Muratore et al. 2024 paper, "Diel partitioning in microbial phosphorus acquisition in the Sargasso Sea."

all_casts.csv, also provided by Daniel Muratore, contains cast CTD data collected concomitantly with the metatranscriptomic bottle samples.

cognames2003-2014.tab, tigr_names.txt, and ko_list.txt contain function names used in img_data.tsv.

Version 2 update: img_data_sample.xlsx is a file that adheres to Simons CMAP submission portal guidelines. dataset_meta_data.xlsx and vars_meta_data.xlsx from v1 are now tabs of this workbook.