cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0161362.10fu
title: SH0161362.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161363.10fu
title: SH0161363.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17450185
title: Rt-PCR curves of RNA template extracted from biofilm state with and without exposure to Quorum-sensing molecules C8HSL at 0.2mM. Images A-I; SdiA, CsgD, FlgG, rck, bapA, FimA, HilA, InvA and the housekeeping gene 16s rRNA.

description: This dataset contains the PCR cycles and relative fluorescence unit (RFU) values obtained from RT-PCR amplification curves for eight Salmonella enterica genes involved in biofilm formation and virulence regulation (sdiA, csgD, rck, bapA, FimA, HilA, InvA, and FlgG).

Each gene was analyzed under four experimental conditions:





S. enteritidis (SE) with C8HSL (quorum sensing signal)




S. enteritidis (SE) without C8HSL




S. Typhimurium 14028 (ST14028) with C8HSL




S. Typhimurium 14028 (ST14028) without C8HSL



The dataset provides raw amplification data (Pcr cycles vs RFU) reflecting transcriptional responses to quorum sensing modulation.
DOI: 10.5281/zenodo.18162315
title: Rt-PCR curves of RNA template extracted from biofilm state with and without exposure to Quorum-sensing molecules C8HSL at 0.2mM. Images A-I; SdiA, CsgD, FlgG, rck, bapA, FimA, HilA, InvA and the housekeeping gene 16s rRNA.

description: This dataset contains the PCR cycles and relative fluorescence unit (RFU) values obtained from RT-PCR amplification curves for eight Salmonella enterica genes involved in biofilm formation and virulence regulation (sdiA, csgD, rck, bapA, FimA, HilA, InvA, and FlgG).

Each gene was analyzed under four experimental conditions:





S. enteritidis (SE) with C8HSL (quorum sensing signal)




S. enteritidis (SE) without C8HSL




S. Typhimurium 14028 (ST14028) with C8HSL




S. Typhimurium 14028 (ST14028) without C8HSL



The dataset provides raw amplification data (Pcr cycles vs RFU) reflecting transcriptional responses to quorum sensing modulation.
DOI: 10.15156/bio/sh0161364.10fu
title: SH0161364.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161365.10fu
title: SH0161365.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161366.10fu
title: SH0161366.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161367.10fu
title: SH0161367.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161368.10fu
title: SH0161368.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161369.10fu
title: SH0161369.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.r6qn3u
title: Occurrence Download

description: A dataset containing 5983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.78841 43.14337,-79.65095 43.34594,-79.26752 43.62085,-78.21128 43.88129,-77.30696 43.80171,-76.46775 44.08386,-75.80218 44.40218,-74.46378 45.06052,-75.3247 42.4995,-78.55932 40.92882,-78.94362 37.75159,-82.39879 35.96723,-83.93982 34.19909,-80.04668 32.17141,-75.75433 35.0608,-75.21902 35.96921,-69.18464 41.61427,-58.39848 46.37855,-64.67618 50.33658,-80.28121 44.09132,-80.03788 43.06937,-79.78841 43.14337))",
 "OccurrenceStatus is Present",
 "TaxonKey is Morone americana (Gmelin, 1789)"
 ]
}

 The dataset includes 5983 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047113-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avf8ps
title: Occurrence Download

description: A dataset containing 1259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.62723 45.36145,-99.78593 43.59827,-101.12819 30.62312,-98.4996 28.63918,-89.32751 27.91212,-86.86671 30.70849,-83.79071 32.21853,-82.9518 36.469,-86.86671 36.97235,-87.48191 42.17359,-87.20228 44.46662,-92.62723 45.36145))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Morone mississippiensis Jordan & Eigenmann, 1887"
 ]
}

 The dataset includes 1259 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047132-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9q6qas
title: Occurrence Download

description: A dataset containing 2450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Morone mississippiensis Jordan & Eigenmann, 1887"
 ]
}

 The dataset includes 2450 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012950-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hje4ev
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-60.09735 7.74269,-63.52245 2.95011,-57.85714 0.26397,-54.87797 0.41048,-55.26868 7.25812,-60.09735 7.74269))",
 "OccurrenceStatus is Present",
 "TaxonKey is Myleus pacu (Jardine, 1841)"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047298-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv5sgv
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.56496 9.58291,-69.41123 5.89038,-60.76015 0.86667,-57.06762 0.91942,-55.48511 3.87345,-59.49414 8.25174,-67.56496 9.58291))",
 "OccurrenceStatus is Present",
 "TaxonKey is Myleus pacu (Jardine, 1841)"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012954-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5extn
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.169 46.08704,27.05879 43.01261,26.97339 41.39,29.87702 39.59658,35.68427 40.27979,59.25488 33.44773,53.87463 48.47826,49.7754 48.30746,42.00393 44.97683,40.72292 48.39286,33.72005 53.43151,28.59601 51.29649,28.169 46.08704))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neogobius melanostomus (Pallas, 1814)"
 ]
}

 The dataset includes 160 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047353-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bdgpg
title: Occurrence Download

description: A dataset containing 2933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.88358 45.56246,-80.01651 44.87664,-76.21856 44.35926,-76.08022 44.1477,-76.00919 43.9209,-76.12696 43.59376,-83.27732 38.95762,-85.26491 33.72381,-86.43121 30.95383,-82.18248 30.7873,-78.2773 32.39896,-75.27838 36.05643,-75.35128 45.31401,-77.9036 45.59439,-79.88358 45.56246))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Noturus insignis (Richardson, 1836)"
 ]
}

 The dataset includes 2933 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047440-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n6ffa
title: Occurrence Download

description: A dataset containing 40895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((19.93582 64.40672,-6.47781 49.95398,-1.92128 41.90886,56.24566 33.50776,62.2973 40.69853,60.37502 60.06378,40.79618 62.34204,19.93582 64.40672))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neogobius melanostomus (Pallas, 1814)"
 ]
}

 The dataset includes 40895 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013073-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byzn2j
title: Occurrence Download

description: A dataset containing 1343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Specimen)",
 "Geometry POLYGON((-121.1722 35.11244,-117.3696 35.99971,-115.59506 39.42205,-119.84129 51.90722,-124.97479 55.58306,-144.79744 64.58756,-157.47274 59.6442,-162.47948 55.52472,-160.0078 54.19382,-121.1722 35.11244))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus clarkii (Richardson, 1836)"
 ]
}

 The dataset includes 1343 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059346-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q24kbq
title: Occurrence Download

description: A dataset containing 3386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.16984 40.95809,-97.16023 39.60069,-95.42577 34.62355,-90.18469 30.06116,-80.83369 30.06116,-71.10564 38.13017,-68.73018 41.07121,-71.29416 44.46472,-73.02862 44.20078,-75.34882 46.80136,-78.89315 46.23577,-80.11728 40.88268,-85.16984 40.95809))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Noturus insignis (Richardson, 1836)"
 ]
}

 The dataset includes 3386 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013076-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfuwgd
title: Occurrence Download

description: A dataset containing 38695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-223.98588 55.52238,-232.29547 37.41172,-229.95174 36.66599,-213.33255 42.20572,-195.75455 51.68718,-167.94936 50.83491,-160.3855 54.24398,-153.29665 56.12932,-145.9359 58.92771,-137.69054 58.01963,-130.97076 51.29985,-123.11477 46.49112,-121.24326 45.6222,-117.50023 47.82792,-127.72672 59.12384,-124.18421 72.62549,-132.87339 71.55605,-163.45135 72.56669,-218.79472 58.73085,-223.98588 55.52238))",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus gorbuscha (Walbaum, 1792)"
 ]
}

 The dataset includes 38695 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007008-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rngrgt
title: Occurrence Download

description: A dataset containing 18549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus clarkii (Richardson, 1836)"
 ]
}

 The dataset includes 18549 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013334-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fvasu
title: Occurrence Download

description: A dataset containing 106749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-219.52258 46.89466,-222.52634 30.5542,-215.12155 41.23723,-151.08134 55.29484,-135.48045 54.81865,-125.26766 39.19908,-116.49667 30.9087,-111.38423 33.24069,-118.53923 50.49323,-130.19383 61.54707,-131.39533 70.79866,-168.88228 71.75987,-204.68713 61.18662,-227.75602 58.30301,-219.52258 46.89466))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus kisutch (Walbaum, 1792)"
 ]
}

 The dataset includes 106749 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059636-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94hvsg
title: Occurrence Download

description: A dataset containing 39104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125.3962 75.51422,-158.74485 74.77038,-190.97776 73.03476,-209.82161 64.72859,-263.0059 65.72037,-311.85114 69.81147,-351.02652 82.95258,-361.81214 65.22448,-373.21763 52.20735,-357.72104 44.02515,-265.36138 59.89366,-243.54218 45.76077,-233.45482 32.3494,-218.4997 39.06624,-192.34146 50.22379,-179.26622 49.91025,-166.7202 51.95263,-149.06824 58.22564,-136.81398 55.59973,-128.06094 46.84669,-127.76918 38.82307,-121.05851 37.36423,-114.23865 44.52104,-125.3962 75.51422))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus gorbuscha (Walbaum, 1792)"
 ]
}

 The dataset includes 39104 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006993-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kr3axj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "ScientificName is Canis lupus",
 "Year 1999-2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008404-251025141854904/datasets/export for details.
DOI: 10.15468/dl.azhhnh
title: Occurrence Download

description: A dataset containing 109839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus kisutch (Walbaum, 1792)"
 ]
}

 The dataset includes 109839 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013357-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6x3uth
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((136.98455 54.08984,123.96368 38.78152,128.01071 28.0481,145.60648 35.43833,161.79459 54.61772,151.06117 63.06369,136.98455 54.08984))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus masou (Brevoort, 1856)"
 ]
}

 The dataset includes 461 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059735-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.