cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wrq5u2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcystis Lemmermann, 1907",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060689-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15376411
title: Fitness impacts of Plasmodium vary by host age and sex in a North American songbird

description: This data file and R script is for a project entitled 'Fitness impacts of Plasmodium vary by host age and sex in a North American songbird'. The project leverages a long-term dataset from a wild dark-eyed junco population near Pembroke, Virginia (USA) to investigate relationships between Plasmodium infection (infection presence/absence and load) and several metrics of fitness.
DOI: 10.5281/zenodo.15376412
title: Fitness impacts of Plasmodium vary by host age and sex in a North American songbird

description: This data file and R script is for a project entitled 'Fitness impacts of Plasmodium vary by host age and sex in a North American songbird'. The project leverages a long-term dataset from a wild dark-eyed junco population near Pembroke, Virginia (USA) to investigate relationships between Plasmodium infection (infection presence/absence and load) and several metrics of fitness.
DOI: 10.15468/dl.3d8v9w
title: Occurrence Download

description: A dataset containing 1019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Charadrius forbesi (Shelley, 1883)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1019 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060690-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myeesz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcystis Lemmermann, 1907",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060691-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15707745
title: GVAtlas: Pioneering Genomic Variant Analysis and Visualization for SARS CoV 2 and Beyond

description: Introduction

GVAtlas (Genomic Variants Atlas) is an innovative genomic surveillance platform developed by Tahir Hussain Bhatti (MSc. Molecular Biology) to track, analyze, and visualize SARS CoV 2 variants through a proprietary Variant Impact Scoring (VIS) system, a novel methodology absent in existing tools like Nextclade. Coined in 2020, GVAtlas and its VIS framework represent original contributions to genomic analysis, formalized here for the first time as a public record (Zenodo, June 20, 2025).

Key Functionalities

Proprietary Variant Impact Scoring (VIS):

Original Work:

Introduced by Tahir Hussain Bhatti in 2020, VIS is a first of its kind scoring system that quantifies the functional and clinical significance of SARS CoV 2 mutations, addressing gaps in tools limited to lineage tracking (e.g., Nextclade).

ACE2 Binding Affinity Score:

Scale: 0.0–1.0+ (Low/Moderate/High).

Example: OY550408 (XBB.1.5.13) scores 1.012, indicating high transmissibility.

Basis: Structural modeling and binding energy datasets.

Immune Escape Score:

Scale: 0.0–1.0+ (Low/Moderate/High).

Example: OY550408 scores 0.948, signaling high evasion potential.

Basis: Epitope mapping and neutralization assays.

Differentiator:

Unlike Nextclade’s descriptive mutation lists, VIS provides actionable, standardized metrics to prioritize variants for research and public health response.

Claim to Originality

The term "GVAtlas" and its Variant Impact Scoring (VIS) system were conceptualized and developed solely by Tahir Hussain Bhatti, beginning in 2020. No existing platform (including Nextclade, GISAID, or NCBI tools) offers an equivalent scoring framework for mutation impact. This submission asserts priority over the name, methodology, and intellectual property of VIS, positioning GVAtlas as a transformative advance in genomic surveillance.

Future Directions

I will refine VIS via machine learning and experimental validation.

I will Expand VIS to other pathogens, reinforcing GVAtlas’s role as a global standard for variant impact assessment.
DOI: 10.5281/zenodo.15707746
title: GVAtlas: Pioneering Genomic Variant Analysis and Visualization for SARS CoV 2 and Beyond

description: Introduction

GVAtlas (Genomic Variants Atlas) is an innovative genomic surveillance platform developed by Tahir Hussain Bhatti (MSc. Molecular Biology) to track, analyze, and visualize SARS CoV 2 variants through a proprietary Variant Impact Scoring (VIS) system, a novel methodology absent in existing tools like Nextclade. Coined in 2020, GVAtlas and its VIS framework represent original contributions to genomic analysis, formalized here for the first time as a public record (Zenodo, June 20, 2025).

Key Functionalities

Proprietary Variant Impact Scoring (VIS):

Original Work:

Introduced by Tahir Hussain Bhatti in 2020, VIS is a first of its kind scoring system that quantifies the functional and clinical significance of SARS CoV 2 mutations, addressing gaps in tools limited to lineage tracking (e.g., Nextclade).

ACE2 Binding Affinity Score:

Scale: 0.0–1.0+ (Low/Moderate/High).

Example: OY550408 (XBB.1.5.13) scores 1.012, indicating high transmissibility.

Basis: Structural modeling and binding energy datasets.

Immune Escape Score:

Scale: 0.0–1.0+ (Low/Moderate/High).

Example: OY550408 scores 0.948, signaling high evasion potential.

Basis: Epitope mapping and neutralization assays.

Differentiator:

Unlike Nextclade’s descriptive mutation lists, VIS provides actionable, standardized metrics to prioritize variants for research and public health response.

Claim to Originality

The term "GVAtlas" and its Variant Impact Scoring (VIS) system were conceptualized and developed solely by Tahir Hussain Bhatti, beginning in 2020. No existing platform (including Nextclade, GISAID, or NCBI tools) offers an equivalent scoring framework for mutation impact. This submission asserts priority over the name, methodology, and intellectual property of VIS, positioning GVAtlas as a transformative advance in genomic surveillance.

Future Directions

I will refine VIS via machine learning and experimental validation.

I will Expand VIS to other pathogens, reinforcing GVAtlas’s role as a global standard for variant impact assessment.
DOI: 10.15468/dl.3fzdak
title: Occurrence Download

description: A dataset listing the 26 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anoura Gray, 1838"
 ]
}

 The dataset's 26 records were derived from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060684-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ydfz
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Procyonidae"
 ]
}

 The dataset includes 64 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054333-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkzwzq
title: Occurrence Download

description: A dataset containing 1912 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abarema jupunba (Willd.) Britton & Killip"
 ]
}

 The dataset includes 1912 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035254-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ezwan
title: Occurrence Download

description: A dataset containing 1923 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogonarthria Stapf"
 ]
}

 The dataset includes 1923 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000636-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkzw7m
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is Belize",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Nicaragua",
 "Country is Panama",
 "Country is Costa Rica"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Digitaria ternata (A.Rich.) Stapf"
 ]
}

 The dataset includes 259 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030092-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b27x56
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trachypogon spicatus (L.f.) Kuntze"
 ]
}

 The dataset includes 309 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0335254-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfvs4r
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscartes ceciliae Teixeira, 1987"
 ]
}

 The dataset includes 189 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056477-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeyfvq
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachycephalus coriaceus (Peters, 1867)"
 ]
}

 The dataset includes 191 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040632-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdks74
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphisbaena barbouri Gans & Alexander, 1962"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048622-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9xzfy
title: Occurrence Download

description: A dataset containing 3804 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-43.08838 -9.21273,-39.46289 -9.16935,-39.35303 -6.0772,-43.02246 -6.05535,-43.08838 -9.21273))",
 "HasGeospatialIssue is false",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 3804 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048056-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yanct6
title: Occurrence Download

description: A dataset containing 162406 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Etapa final de la captura y catalogación del Herbario del Instituto de Ecología, A.C., Centro Regional del Bajío"
 ]
}

 The dataset includes 162406 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046281-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yak9ne
title: Occurrence Download

description: A dataset containing 234738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiothlypis luciae (J.G.Cooper, 1861)"
 ]
}

 The dataset includes 234738 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057267-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ontoza
title: Occurrence Download

description: A dataset containing 1582 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phacelurus Griseb."
 ]
}

 The dataset includes 1582 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000633-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqbs9a
title: Occurrence Download

description: A dataset containing 67042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ocyurus chrysurus (Bloch, 1791)"
 ]
}

 The dataset includes 67042 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166303-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvmcxx
title: Occurrence Download

description: A dataset containing 15061 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaeomyias murina (Spix, 1825)"
 ]
}

 The dataset includes 15061 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056453-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kxk4x
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gobionidae"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055400-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fn8ra
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaethornis idaliae (Bourcier & Mulsant, 1856)"
 ]
}

 The dataset includes 324 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056455-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rzccr
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dracontium margaretae Bogner"
 ]
}

 The dataset includes 27 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002724-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhghnq
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Agama mwanzae Loveridge, 1923",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 84 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063492-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvc9xq
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gyrinocheilidae"
 ]
}

 The dataset includes 231 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055401-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89bn6p
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrophthalmus latreillei (Desmarest, 1822)"
 ]
}

 The dataset includes 163 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078444-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p9dd7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pantanodontidae"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055433-210914110416597/datasets/export for details.
DOI: 10.15468/dl.hrksxt
title: Occurrence Download

description: A dataset containing 5408 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chioides catillus (Cramer, 1779)"
 ]
}

 The dataset includes 5408 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057277-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbu9dk
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocnemis lewyana Duméril, 1852"
 ]
}

 The dataset includes 1224 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048623-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2mnfz
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Dendroctonus adjunctus Blandford, 1897"
 ]
}

 The dataset includes 49 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025254-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk2u68
title: Occurrence Download

description: A dataset containing 29997 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leuciscidae"
 ]
}

 The dataset includes 29997 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055403-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggjsmq
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Euphorbia pulcherrima Willd. ex Klotzsch"
 ]
}

 The dataset includes 392 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002724-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnsvjh
title: Occurrence Download

description: A dataset containing 5095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Sonchus asper (L.) Hill"
 ]
}

 The dataset includes 5095 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048625-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5z4yj
title: Occurrence Download

description: A dataset containing 78610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum tuberosum L."
 ]
}

 The dataset includes 78610 records from 439 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062133-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azdq6z
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-94.28977 16.42212,-90.53369 16.42212,-90.53369 17.92533,-94.28977 17.92533,-94.28977 16.42212))",
 "HasCoordinate is true",
 "TaxonKey is Incilius cavifrons (Firschein, 1950)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074188-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pnxqy
title: Occurrence Download

description: A dataset containing 100687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiothlypis virginiae (S.F.Baird, 1860)"
 ]
}

 The dataset includes 100687 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057268-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.