cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28729010.v1
title: Otago Schist lizard habitat

description: Rock outcrops provide distinct physical resources for biological species that depend on them for persistence in terrestrial environments. This paper synthesises existing and new information to characterise and quantify geological features of tor outcrops in Otago Schist that host indigenous rock-dwelling lizards. The highest grade of metamorphism and structural reconstitution of schist, Textural Zone (TZ) 4, dominates regional lizard distribution, with some spillover into less well-foliated TZ 3 schist. Quartz lineations, abundant cross-cutting quartz veins, and joints are favourable for making ridges of protruding tors in TZ 4 landscape. The principal lizard habitat is in narrow (&lt;6 cm), recessed (up to 30 cm), wedge-shaped pelitic schist cavities eroded beneath relatively erosion-resistant psammitic schist layers. Both schist lithologies provide basking surfaces for lizards but surface temperatures were highest on pelitic schist during experimental sun heating. The lithological controls on tor outcrop morphology provide explanatory and predictive data for habitat carrying capacity of lizards across Otago, although differences may exist between Caples and Torlesse Terrane schists in refuge density. This information can be integrated into conservation initiatives to preserve and enhance lizard populations.
DOI: 10.6084/m9.figshare.28934240.v1
title: Costa Rican women's national team. Laboratory Test FIFA World Cup 2024

description: Data for the manuscript: Association between Physiological and Body Composition Indicators with Physical–Technical Output of a Women’s National Team during the FIFA World Cup.
DOI: 10.6084/m9.figshare.7991600.v2
title: Fish Behaviour Index (FBI)

description: <b>The Fish Behaviour Index (FBI):</b><i> </i>User guide, FBI spreadsheet and examples as outlined in the FBI user guide. <br><b>The FBI is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i><br><i><br></i>
DOI: 10.6084/m9.figshare.12763547.v3
title: Dating Alphaproteobacteria evolution with eukaryotic fossils

description: <br><br>Data and codes for the study Wang, S., Luo, H. Dating Alphaproteobacteria evolution with eukaryotic fossils. Nat Commun 12, 3324 (2021). For a more detailed introduction to each dataset, please see the file Readme.docx. Please let me know should there be any question.<br><br><b>host_asr/</b>: reconstruction of ancestral hosts of<b>phylobayes/:</b> time estimates using phylobayes<b>beast/:</b> time estimates using BEAST<b>phylogeny/:</b> phylogenomic reconstruction of α-proteobacteria+mitochondria with two recoding schemes (<i>dayhoff4</i> and <i>SR4</i>) based on GTR+G+F+C30 under PMSF approximation<b>mcmc3r/:</b> mcmc3r analysis using the 20-taxon (s20) and 40-taxon (s20) subsets of species<b>dating-dna/: </b>time estimates using MCMCTree based on nucleotides<b>dating-aa/: </b>time estimates using MCMCTree based on amino acids. You might wish to note that the tree presented in Fig. 1 corresponds to topo1.<b>dating-expanded/:</b> MCMCTree molecular clock analysis with the expanded genome set based on amino acids<b>dating-cyano/:</b> MCMCTree molecular clock analysis using the cyanobacteria-based strategy<b>scripts/:</b> scripts used in analysis<br>Update for v3:proteins used in MCMCtree analysis uploaded.<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.19614657.v4
title: Transition1x

description: <b>Transition1x - a dataset for building generalizable reactive machine learning potentials</b>https://www.nature.com/articles/s41597-022-01870-w<br>This dataset is constructed by running NEB on 10.000 reactions with H, C, N and O using the wb97x functional and 6-31G(d) basis set. This resulted in DFT calculations for 9.6 million molecular configurations on and around minimal energy paths on the potential energy surface. The data is intended for training ML models to work in transition state regions of chemical space.<br>Dataloaders and example scripts are availble in https://gitlab.com/matschreiner/T1x<br>The authors acknowledge support from the Novo Nordisk Foundation (SURE, NNF19OC0057822) and the European Union’s Horizon 2020 research and innovation program under Grant Agreement No. 957189 (BIG-MAP) and No. 957213 (BATTERY2030PLUS). Ole Winther also receives support from Novo Nordisk Foundation through the Center for Basic Machine Learning Research in Life Science (NNF20OC0062606) and the Pioneer Centre for AI, DNRF grant number P1
DOI: 10.6084/m9.figshare.21384186.v1
title: Corn 3D point clouds

description: This data are corn point clouds collected by Terrestrial laser scanning. They contain a total of 48 individual corn point clouds in three different growing seasons. The data format is pcd, and each point cloud data contains the (x,y,z) coordinates of the points.
DOI: 10.6084/m9.figshare.22666207.v1
title: Supplemental Table 4 mouse-human comp.xlsx

description: Comparison between mouse LV Day 3 AngII/PE with human HFpEF
DOI: 10.17632/6tgz2db7yn
title: Dataset on diagnostic errors of Ear, Nose and Throat (ENT) diseases 

description: This data assessed the diagnosis outcomes that were made by the patient’s non-ENT clinicians at the referral health facilities and those that were made by ENT specialists at the hospital patients were referred to. The ENT specialist's diagnoses were made after further investigation and this diagnosis was the definitive or final diagnosis. Furthermore, where there was an agreement between the diagnosis made by the non-ENT clinicians and the ENT specialists, it was referred to as a ‘match’ and differences in diagnosis were classified as a 'mismatch'.
DOI: 10.17632/w3hr2dgt2s
title: The real-time detection of vertical displacements by low-cost GNSS receivers using Precise Point Positioning (dataset)

description: The dataset contains RINEX files used in both parts of the experiment concerning GNSS levelling and real-time detection of vertical displacements.
DOI: 10.6084/m9.figshare.25058588.v1
title: source file related the manuscript "<b>Single-base tiled screen reveals new design principles of </b><b><i>Psp</i></b><b>Cas13b for potent and off-target-free RNA silencing</b>" by Hu et al, 2024

description: This file contains raw data related to the manuscript "<b>Single-base tiled screen reveals new design principles of </b><b><i>Psp</i></b><b>Cas13b for potent and off-target-free RNA silencing</b>" by Hu et al, 2024.Authors:Wenxin Hu<sup>1,2</sup>, Amit Kumar<sup>1,2,8</sup>, Syed Faraz<sup> </sup>Ahmed<sup>6,7</sup>, Shijiao Qi<sup>1,2</sup>, David K.G. Ma<sup>2,3</sup>, Honglin Chen<sup>1,2</sup>, Gurjeet J. Singh<sup>1,2</sup>, Joshua M.L. Casan<sup>1,2</sup>, Michelle Haber<sup>4,5</sup>, Ilia Voskoboinik<sup>1,2</sup>, Matthew McKay<sup>6,7</sup>, Joseph A. Trapani<sup>1,2</sup>, Paul G. Ekert<sup>1,2,3,4,5 </sup>and Mohamed Fareh<sup>1,2,</sup><sup>*</sup><sup>Affiliations</sup><sup>1</sup>Peter MacCallum Cancer Centre, Melbourne, 3000, Australia<sup>2</sup>Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, 3052, Australia<sup>3</sup>Murdoch Children’s Research Institute, Royal Children's Hospital, 50 Flemington Rd, Parkville, Melbourne, 3052, Australia<sup>4</sup>Children’s Cancer Institute, Lowy Cancer Research Centre, UNSW Sydney, NSW Australia 2052<sup>5</sup>School of Women’s and Children’s Health, UNSW Sydney, Sydney, NSW, Australia<sup>6</sup>Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville, VIC 3010, Australia<sup>7</sup>Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, VIC 3000, Australia<sup>8</sup> Present address: Diagnostic Genomics, Monash Health Pathology, Monash Medical Centre, 246 Clayton Rd, Clayton VIC 3168
DOI: 10.6084/m9.figshare.28824236.v1
title: Movies from the revised version of manuscript McKellar et al. initially posted on bioRxiv in 2024: Human MX1 induces the cytoplasmic sequestration of neo-synthesized influenza A virus vRNPs

description: The movies are supplementary material to a revised version for https://www.biorxiv.org/content/10.1101/2024.02.22.581565v1 (revised version not on BioRxiv)
DOI: 10.17632/tdjbdwwjwj
title: Chlorophyll-a (Chl-a) and Rrs dataset used to estimate Chlorophyll-a in Western Mississippi Sound

description: This dataset supports the study titled "Estimation of Chlorophyll-a in Uncrewed Aircraft Systems Imagery using Autonomous Surface Vessel data with Machine Learning Algorithms and Feature Selection Techniques" for monitoring Chlorophyll-a (Chl-a) in the Western Mississippi Sound (WMS). It includes field-measured in situ Chl-a concentrations alongside remote sensing reflectance (Rrs) data derived from a hand-held radiometer. The Rrs values correspond to five spectral bands of the Micasense RedEdge sensor, adjusted to match the sensor's spectral response. These data were collected concurrently with an Autonomous Surface Vessel (ASV) and Uncrewed Aircraft System (UAS) to ensure compatibility with remote sensing applications.
DOI: 10.6084/m9.figshare.13614620.v1
title: Supplementary Material for: Curcumin-Loaded Self-Microemulsifying Gel for Enhancing Wound Closure

description: <b><i>Introduction:</i></b> Wound healing is a process in which damaged cutaneous tissues are repaired and is a dynamic physiological interaction involving several types of cells, tissues, and proteins. Compared with typical treatments, specifically in terms of multifunctional properties, bioactive drug-loaded wound dressing in a controlled and sustained delivery system is an advanced tool that significantly improves wound healing. Curcumin substantially enhances wound healing and prevents oxidative damage. However, the effects of this compound on improving wound healing are limited by its aqueous solubility, poor tissue absorption, and rapid metabolism. Hence, the current study aimed to investigate the therapeutic effect of curcumin-loaded self-microemulsifying gel on wound healing. <b><i>Methods:</i></b> Ex vivo permeation studies of the skin of BALB/c mice were performed using a diffusion cell sampling system. The in vivo therapeutic effect was investigated with a full-thickness wound model. Two 6-mm full-thickness circular wounds were created on the back of the mice via punch biopsy. Then, they received different topical gels for 12 days to enhance wound closure. <b><i>Results:</i></b> The curcumin-loaded self-microemulsifying gel had higher skin flux, cumulative amount, and permeability coefficient than the commercial gels. In addition, it enhanced wound healing. <b><i>Conclusions:</i></b> This is the first study that utilized self-microemulsifying gel loaded with curcumin as a delivery system for wound healing. However, the effect of this delivery system on wound healing or skin disease treatment should be further investigated.
DOI: 10.17632/jhgrr5cb5p
title: DESIGNING LONG-LASTING RUT-RESISTANT ASPHALT CONCRETE USING MARSHALL MIX DESIGN METHOD

description: This paper summarizes the binder and wearing course mix design test results used during the sectional rehabilitation of the Tanzam highway in Tanzania. The mix design was carried out using the Marshall mix design procedures whereby the Marshall specimens were compacted to refusal using 500 Marshall blows. The optimum binder content was selected as the binder content, which gave 3% air voids at 500 blows - 0.4%. The rehabilitated pavement section has been heavily trafficked, with estimated traffic loading of 6 million equivalent standard axles traversing the pavement within three years with no noticeable rutting. Therefore, the Marshall mix design method can be used to design asphalt concrete for heavily loaded pavement if the binder content is correctly selected to limit the effect of post-construction densification.
DOI: 10.17632/tpcw383fkm
title: USP tropical maize hybrid panel

description: 906 maize single-crosses obtained from a full dial- lel, according to Griffing’s method 4, divided into two heterotic groups, flint and dent, with 34 and 15 lines, respec- tively. Moreover, each heterotic group has a representative line, frequently used as the tester in our breeding program. The experimental scheme used to evaluate the hybrids was an augmented block design (unreplicated trial) consisted of small blocks, each with 16 unique hybrids and two checks. Trials were carried out in Anhembi (22°50′51′′S, 48°01′06′′W, 466 m) and Piracicaba, at São Paulo State, Brazil (22°42′23′′S, 47°38′14′′W, 535 m), during the second growing season of 2016 and 2017, cultivated between January to June. In both sites and years, the hybrids were evaluated under two nitrogen (N) levels, low (LN) with 30 kg N ha−1, and normal (NN) with 100 kg N ha−1. The genotyping of the 49 tropical inbred lines was per- formed by Affymetrix® platform, containing about 614,000 SNPs (Unterseer et al. 2014). Then, markers with low call rate (&lt; 95%), minor allele frequency (MAF &lt; 0.05) and heterozygous loci on at least one individual were removed. The missing markers were imputed using the snpReady R package. Finally, the resulting 146,365 SNPs high-quality polymorphic SNPs were used to build the artificial hybrids genomic matrix, deduced by combining the genotypes from its two parents.
DOI: 10.6084/m9.figshare.15627969.v2
title: Spatio-temporal Variation and Biodegradation of Chromophoric Dissolved Organic Matter (CDOM) in the Bohai Sea and the Yellow Sea

description: Relevant sampling information and the measurement data of chromophoric dissolved organic matter (CDOM) in the Bohai Sea and the Yellow Sea<br>
DOI: 10.6084/m9.figshare.19328939.v7
title: MultiPic: Multilingual Picture Database

description: Database of name agreement and familiarity for a set of 500 colored pictures of concrete objects in 34 different languages (i.e., American English, Australian English, Basque, Belgium Dutch, British English, Cantonese, Catalan, Cypriot Greek, Czech, Finnish, French, Galician, German, Greek, Hebrew, Hungarian, Italian, Korean, Lebanese Arabic, Malay, Malay English, Mandarin Chinese, Netherlands Dutch, Norwegian, Polish, Portuguese, Quebec French, Rioplatense Spanish, Russian, Serbian, Slovak, Spanish, Turkish, Welsh).
DOI: 10.6084/m9.figshare.28498571.v1
title: <b>Does long term fertilization impact soil carbon’s functional group composition and its distribution in aggregates?</b>

description: The carbon (C) sink capacity of soil hinges its ability to retain C over time. Hence, understanding the factors influencing C stability is crucial for assessing changes in its dynamics due to long-term agricultural practices. The present study was conducted from 51-year long-term fertilizer experiment (LTFE) in maize-wheat system started since 1971 by selecting five treatments consisting of control, 100% N, 100%NPK, 150% NPK, 100% NPK+ farmyard manure (FYM) (10 Mg ha<sup>-1</sup>) along with undisturbed fallow area. The study determined the soil organic carbon (SOC) and its fractions, including particulate organic matter (POM), light, and heavy C (LFC and HFC), in 0-100 cm soil, and aggregate size and associated C in 0-15 cm and 15-30 cm soil. Fourier Transform Spectroscopy- Attenuated Total Reflectance (FTIR-ATR) was used to analyze functional groups within the SOC. Long-term use of 100% NPK+FYM significantly increased SOC by 150%, even in deeper layers. The concentration of cPOM, fPOM, LFC and HFC, in 0-15 cm layer were 55-147, 65-103, 30-70 and 11-80% higher over control. Micro-aggregates decreased while macro-aggregates increased under 100%NPK+FYM, resulting in improved soil aggregation compared to chemical fertilization-based treatments and control. FTIR revealed that integrated application of chemical fertilizers and organic manures positively impacts the presence of amides, amines, hydroxyl, aliphatic, and carboxylic groups, as well as complex organic molecules like polysaccharides, lignin, and phenols. This study demonstrated the beneficial effects of long-term, balanced, and integrated fertilizer management in maize-wheat system on aggregates associated C, stable C fractions, and functional groups for improved soil and environmental sustainability.
DOI: 10.6084/m9.figshare.8323688.v1
title: Temperatures for each plot and each month

description: Temperatures for each plot and each month
DOI: 10.6084/m9.figshare.12278249.v7
title: SARS-CoV-2 RNA in blood

description: This dataset provides supplementary material for a report of the prevalence of SARS-CoV-2 RNA in blood and blood products.<br> <b>Extended Data File 1: Metadata table providing data for prevalence of SARS-CoV-2 RNA in blood and blood products based on a systematic literature review. </b>Details of 28 citations are presented, and the 22 studies included in quantitative meta-analysis are indicated.<br> <b>Extended Data File 2: qRT-PCR quantification of vRNA from sera and viral culture assays.</b> Calculation of vRNA copy numbers, and qRT-PCR results in figure and table format.<br> <b>Underlying Data File 1: Metadata table providing underlying data for serum samples from adults with confirmed SARS-CoV-2 infection, based on RT-PCR nose/throat swab. </b>Sheet 1: samples obtained through patients recruited into a UK clinical cohort at Oxford University Hospitals NHS Foundation Trust (n=212 samples from 167 unique individuals). Cells highlighted in blue show follow-up samples collected from the same individual at different time points. Cells highlighted in orange show serum PCR positives. Sheet 2: samples obtained from convalescent donors a minimum of 28 days post resolution of symptoms, via NHS Blood and Transplant, NHSBT (n=142 samples from 142 individuals).<br><b>RT-PCR Primer sequences: </b>provided in a .xlsx file.<br><b> </b><b>PRISMA checklist: </b>reporting for systematic review and meta-analysis<br><b> </b><b>STROBE checklist: </b>reporting for cohort studies<br><b>Fig 4A-D:</b> raw, unedited microscope images of cell cultures. Dates of each image stored in the format YYYYMMDD. (A) and (B) are controls:(A) Negative control Vero E6 cells in media; (B) Cytopathic effect (CPE) in Vero E6 cells spiked with Victoria/01/2020 SARS-CoV-2.(C) and (D) are Vero E6 cells inoculated with 1/10 dilution of serum sample from sample VC12 (patient ID UKCOV040), that tested positive for SARS-CoV-2 RNA by RT-PCR:(C) Aberrant cellular effects at day 4 in a culture inoculated with VC12 at day 0; (D) Normal appearance of cells at day 7 inoculated with 1/10 dilution of the culture supernatant of the VC12-challenged culture, illustrated in (C).<br>
DOI: 10.6084/m9.figshare.19501921.v1
title: Dataset

description: This is a description
DOI: 10.6084/m9.figshare.24420598.v1
title: Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning: DepMap23Q2

description: Cancer Dependency Map (DepMap) cancer cell lines multi-omic datasets.<br><br>
DOI: 10.6084/m9.figshare.29105015.v1
title: [<sup>68</sup>Ga]DOTA-FAPI-04, on-cassette

description: Time List and Cassette Layout for the synthesis of Gallium-68 DOTA-FAPI-04 using an on-cassette protocol with cyclotron produced [<sup>68</sup>Ga]GaCl<sub>3</sub>This labeling method, uses a preformulated reactor and does not require solid phase extraction (SPE) purification after labeling.Reference: Wang IE, Cheng K, Brooks AF, Scott PJH, Viglianti BL. Towards a General Method for Using Cyclotron-Produced Ga68 to Manufacture Clinical and Research Ga68 Tracers. Molecules. 2024; 29(22):5457. https://doi.org/10.3390/molecules29225457
DOI: 10.6084/m9.figshare.29149667.v1
title: Associations between ambient particulate matter exposure and the prevalence of arthritis: findings from the China Health and Retirement Longitudinal Study

description: The raw data and R code for this article: “Associations between ambient particulate matter exposure and the prevalence of arthritis: findings from the China Health and Retirement Longitudinal Study.”
DOI: 10.6084/m9.figshare.3517595.v1
title: Appendix D. Predictions of the reliance of focal predators on source habitats derived using Bayesian isotope mixing models parameterized with different fractionation values.

description: Predictions of the reliance of focal predators on source habitats derived using Bayesian isotope mixing models parameterized with different fractionation values.
DOI: 10.17632/2x8xnfbsfd
title: Dataset of Concerns for Privacy Information Practices and Consumer Behavior in Online Market: A survey in Vietnam

description: This novel dataset provides valuable survey insights into privacy concerns, online trust, and purchase intentions among consumers in Vietnam's rapidly growing e-commerce market. With 467 randomized respondents, it explores perspectives on privacy aspects like data collection, secondary usage, access, and errors—and their impact on online consumer behavior.
DOI: 10.17632/5bvng5dynm
title: BSR: B-spline atomic R-matrix codes

description: Abstract BSR is a general program to calculate atomic continuum processes using the B-spline R-matrix method, including electron–atom and electron–ion scattering, and radiative processes such as bound–bound transitions, photoionization and polarizabilities. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme by including terms of the Breit–Pauli Hamiltonian. Title of program: BSR Catalogue Id: ADWY_v1_0 Nature of problem This program uses the R-matrix method to calculate electron-atom and electron-ion collision processes, with options to calculate radiative data, photoionization etc. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme, with options to include Breit-Pauli terms in the Hamiltonian. Versions of this program held in the CPC repository in Mendeley Data ADWY_v1_0; BSR; 10.1016/j.cpc.2005.10.006 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.28262693.v4
title: <b>YO-AFD: An improved YOLOv8-based deep learning approach for rapid and accurate</b>

description: The training images: <b>images\train\*.jpg</b>The annotations: <b>annotations\train\*.xml</b>
DOI: 10.6084/m9.figshare.28766750.v1
title: Data for "Non-contact and nanometer-scale measurement of PN junction depth buried in Si wafers using terahertz emission spectroscopy"

description: Data set for paper titled "Non-contact and nanometer-scale measurement of PN junction depth buried in Si wafers using terahertz emission spectroscopy"
DOI: 10.6084/m9.figshare.29069771.v2
title: Supplementary Data for CE&E.xlsx

description: This document contains five supplementary tables (Table 4 to Table 8), which serve as the supporting data tables for the study entitled <b>"Enhanced continental weathering drove a transient oxygenation event during the largest Ediacaran carbon isotope excursion."</b>