cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3598733_d5
title: Additional file 2: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

description: Expression in untreated breast cancer cell lines in comparison to MCF12A. Probe IDs, gene names, and relative expressions in breast cancer cell lines with respect to untreated MCF12A at 1.5 fold and Pâ
DOI: 10.6084/m9.figshare.c.3598718_d6
title: Additional file 3: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

description: Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Functional annotation clustering conducted with DAVID of the top 5 % of homologs ranked by the number of commonly co-expressed genes. Sheet 2: Functional annotation clustering conducted with DAVID of the bottom 5 % of homologs ranked by the number of commonly co-expressed genes. Sheets 3 and 4: Same analysis as sheet 1 and 2 but using one-to-one homologous genes only. Sheets 5–8: Functional enrichment analysis using the GSEA method on the same gene lists as described for sheet 1–4. (XLS 756 kb)
DOI: 10.15468/dl.jxjpsq
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Mitrella Miq."
 ]
}

 The dataset includes 200 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032392-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prsrjr
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus cupreus (Spix, 1823)"
 ]
}

 The dataset includes 121 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032394-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598796_d2
title: Additional file 7: of Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network

description: The best-associated SNP is listed for each cis-eQTL (FDR
DOI: 10.15468/dl.49zds5
title: Occurrence Download

description: A dataset containing 4518 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wyethia angustifolia (DC.) Nutt."
 ]
}

 The dataset includes 4518 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032393-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598823_d1
title: Additional file 1: of Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in Aspergillus niger

description: Matlab codes. The Matlab codes used for modeling the Mt. (ZIP 22 kb)
DOI: 10.6084/m9.figshare.c.3598796_d4
title: Additional file 9: of Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network

description: GWAS hits tagged by TNFSF-related gene eQTLs (Additional file 7) were examined for risk allele effects. SNPs associated with gene expression in multiple cell types are repeated, one line per cell type. Duplicate associations from different studies were removed in plotting Fig.Â 5 but are retained here due to different references, p values and odds ratios. (XLSX 55 kb)
DOI: 10.15468/dl.3v3rzs
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON ((-92.40173 16.75937, -92.30737 16.75937, -92.30737 16.84784, -92.40173 16.84784, -92.40173 16.75937))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032396-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3b6yr9
title: Occurrence Download

description: A dataset containing 1339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-134 42,-111 42,-111.0002 48.51305,-111.15292 54.52723,-117.83227 54.49744,-122.68866 54.48562,-123.2952 54.48768,-134 54.5,-134 42))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Boloria chariclea (Schneider, 1794)"
 ]
}

 The dataset includes 1339 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032395-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n77nj9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Steno attenuatus Gray, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032397-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3598841_d2
title: Additional file 4: of A principal components method constrained by elementary flux modes: analysis of flux data sets

description: Data of the Saccharomyces cerevisiae case study. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3598796_d9
title: Additional file 2: of Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network

description: Autosomal TNFSF-related genes were identified and probesets extracted from theÂ Hugene1.1St Array. Gene names are from Ensembl release 71. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3598841_d3
title: Additional file 2: of A principal components method constrained by elementary flux modes: analysis of flux data sets

description: Matlab implementation of the proposed algorithm. (RAR 125 kb)
DOI: 10.6084/m9.figshare.c.3598853_d1
title: Additional file 1:  of Helminth infections and gut microbiota â   a feline perspective

description: Dataset S1. Sequence data representing the V3-V4 hypervariable region of the bacterial rRNA amplified from faecal samples from Toxocara cati-positive (Tc+) and T. cati-negative (Tc-) cats, and taxonomic assignment. (XLSX 3501 kb)
DOI: 10.6084/m9.figshare.c.3598874_d1
title: Additional file 1: of Quality of public information matters in mate-choice copying in female zebra finches

description: Table of weights, male time spent and male song. The table contains the weight of birds used in the experiments, the time stimulus males spent close to the test females, and the number of times stimulus males sang within the two mate-choice tests. Given are the median, 1st quartile and 3rd quartile. adorned = adorned stimulus males, unadorned = unadorned stimulus males. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3598889_d4
title: Additional file 1: Table S1. of Triatomine bugs, their microbiota and Trypanosoma cruzi: asymmetric responses of bacteria to an infected blood meal

description: Barcodes added to the 16S forward (F) and reverse (R) primers, identifying each amplicon sample. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3598901_d2
title: Additional file 2: of ELF5 isoform expression is tissue-specific and significantly altered in cancer

description: Excel spreadsheet with details of all qPCR assays (Roche UPL assays worksheet 1 and TaqMan assays worksheet 2). (XLSX 25 kb)
DOI: 10.6084/m9.figshare.28020827
title: 0.074 ng

description: This dataset was used to explore deep learning models ability to quantify analyte load of LFA. Commercially available COVID-19 Rapid test kits, which test for the presence of nucleocapsid(N) protein, were photographed with a smartphone after results were ready. During the testing a known amount of N protein was added to the extraction buffer tube after which the following steps were performed according to manufacturer's instructions. This dataset was used to train deep learning models to classify various levels of N protein.
DOI: 10.15468/dl.jc3fsz
title: Occurrence Download

description: A dataset containing 1360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physeter macrocephalus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1360 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032398-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598943_d3
title: Additional file 7: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from experiments with real images. This file contains all numerical data from the experiments with real images. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3598943_d4
title: Additional file 8: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from FibrilTool experiments with synthetic images. This file contains all numerical data from the comparative experiments with FibrilTool using synthetic images. (XLSX 336 kb)
DOI: 10.6084/m9.figshare.c.3598946_d3
title: Additional file 5: of CTCF-mediated chromatin loops enclose inducible gene regulatory domains

description: A custom Python script. (ZIP 7kb)
DOI: 10.6084/m9.figshare.c.3598943_d5
title: Additional file 5: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from sensitivity experiments. This file contains all numerical data from the experiments evaluating the sensitivity of the results to changes in the values of adjustable parameters. (XLSX 8008 kb)
DOI: 10.6084/m9.figshare.c.3598943_d6
title: Additional file 1: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: CytoSpectre installer. This file contains the installation package for the Windows 7 (64-bit) deployed application. (EXE 10939 kb)
DOI: 10.6084/m9.figshare.28020821
title: 0.18 ng

description: This dataset was used to explore deep learning models ability to quantify analyte load of LFA. Commercially available COVID-19 Rapid test kits, which test for the presence of nucleocapsid(N) protein, were photographed with a smartphone after results were ready. During the testing a known amount of N protein was added to the extraction buffer tube after which the following steps were performed according to manufacturer's instructions. This dataset was used to train deep learning models to classify various levels of N protein.
DOI: 10.6084/m9.figshare.c.3598946_d4
title: Additional file 2: Table S1. of CTCF-mediated chromatin loops enclose inducible gene regulatory domains

description: Gene Ontology term overrepresentation for genes located within and flanking ChIA-PET CTCF loops in K562 and MCF-7 cell lines. (XLSX 11854 kb)
DOI: 10.6084/m9.figshare.c.3598943_d9
title: Additional file 9: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from the case study. This file contains all numerical data from the case study experiment. (XLSX 919 kb)
DOI: 10.15468/dl.9gaww6
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus obtusilobus A.Heller"
 ]
}

 The dataset includes 394 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032401-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqrnrz
title: Occurrence Download

description: A dataset containing 10932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Dryobates villosus (Linnaeus, 1766)"
 ]
}

 The dataset includes 10932 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032399-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xnyp3
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON ((-92.73257 16.7512, -92.63971 16.7512, -92.63971 16.84094, -92.73257 16.84094, -92.73257 16.7512))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032403-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598976_d6
title: Additional file 4: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

description: Variant information between BTx623 and HongKeZi and features of each mutation on the physical position. (CSV 8445 kb)
DOI: 10.6084/m9.figshare.c.3598976_d7
title: Additional file 3: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

description: Primer sequences used technical validation of expression data obtained from RNASeq. (XLSX 9 kb)
DOI: 10.15468/dl.7m7nev
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Neotoma mexicana Baird, 1855"
 ]
}

 The dataset includes 349 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032404-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598976_d9
title: Additional file 5: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

description: Primer sequences and validation of additional variants using KASP technology. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3598976_d10
title: Additional file 11: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

description: Sequences near SNP site to be used for primer design. (XLSX 4098 kb)
DOI: 10.6084/m9.figshare.c.3598976_d11
title: Additional file 9: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

description: Description of transcripts retrieved from sorghum bicolor genome v 1.0. (XLSX 7247 kb)
DOI: 10.6084/m9.figshare.c.3599027_d3
title: Additional file 4: Tables S4. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: Selected target genes (37,661) used as a reference set for Fisherâ  s exact test. (XLSX 2572Â kb)
DOI: 10.6084/m9.figshare.c.3599027_d4
title: Additional file 8: Table S9. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: GO terms significantly over-represented in mite genes that are down-regulated in the A. mellifera host, cluster 3 (56 genes). (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3599027_d5
title: Additional file 6: Table S6. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: Genes that had a significant Blastx similarity hit (e-value ≤ 1e-06) to the M. occidentalis predicted peptideds (cluster 1). Table S8. Genes that had a significant Blastx similarity hit (e-value ≤ 1e-06) to the M. occidentalis predicted peptideds (cluster 2). Table S10. Genes that had a significant Blastx similarity hit (e-value ≤ 1e-06) to the M. occidentalis predicted peptideds (cluster 3). (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3599027_d6
title: Additional file 5: Table S5. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: GO terms significantly over-represented in mite genes that are down-regulated in the A. mellifera host, cluster 1 (23 genes). (XLS 43Â kb)
DOI: 10.6084/m9.figshare.c.3599027_d8
title: Additional file 7: Table S7. of Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

description: GO terms significantly over-represented in mite genes that are down-regulated in the A. mellifera host, cluster 2 (208 genes). (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3599063_d2
title: Additional file 2: Table S2 of A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging

description: 957 genes significantly associated with age across 340 samples (XLSX 257 kb)
DOI: 10.15468/dl.8aerfg
title: Occurrence Download

description: A dataset containing 94401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Dryobates scalaris (Wagler, 1829)"
 ]
}

 The dataset includes 94401 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032402-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17306360
title: snails and cheeses study on Instagram (post and hashtag collection method using LLMs)
DOI: 10.4121/9b4c88e6-ac97-4d32-ac6d-d8ff21fb19c2
title: Dataset underlying the publication: Dating Celtic fields with luminescence

description: The content of this data set is the data that has been used for the publication of the article "Dating Celtic fields with Luminescence". We have performed both small-aliquot quartz OSL measurements and single-grain feldspar pIRIR measurements to 1) test which luminescence dating sampling strategy is best suited to obtain adequate information to understand the age and formation process of Celtic field banks, 2 ) investigate what luminescence procedures provide robust information on the ages of bank construction and formation processes, and 3) interpret what the luminescence data tell us about the age and formation processes of Celtic field banks. The measurements were performed on 6 samples collected from the Celtic field in Vaassen, and 7 samples collected from the Celtic field in Zeijen. The results of the measurements were analysed using the "Luminescence" package in R and age models coded in Matlab. The dataset includes all of the raw data of the measurements (*.binx/*.SEQ/*.sec/*.txt); scripts (*.R/*.m), input data, results of analyses involving R (*.R/*.pdf/*.csv/*.xlsx); and other additional analyses required for the research (*.xlsx/*.pdf/*.csv), including the results of the filtering method.<br>
DOI: 10.4121/9b4c88e6-ac97-4d32-ac6d-d8ff21fb19c2.v1
title: Dataset underlying the publication: Dating Celtic fields with luminescence

description: The content of this data set is the data that has been used for the publication of the article "Dating Celtic fields with Luminescence". We have performed both small-aliquot quartz OSL measurements and single-grain feldspar pIRIR measurements to 1) test which luminescence dating sampling strategy is best suited to obtain adequate information to understand the age and formation process of Celtic field banks, 2 ) investigate what luminescence procedures provide robust information on the ages of bank construction and formation processes, and 3) interpret what the luminescence data tell us about the age and formation processes of Celtic field banks. The measurements were performed on 6 samples collected from the Celtic field in Vaassen, and 7 samples collected from the Celtic field in Zeijen. The results of the measurements were analysed using the "Luminescence" package in R and age models coded in Matlab. The dataset includes all of the raw data of the measurements (*.binx/*.SEQ/*.sec/*.txt); scripts (*.R/*.m), input data, results of analyses involving R (*.R/*.pdf/*.csv/*.xlsx); and other additional analyses required for the research (*.xlsx/*.pdf/*.csv), including the results of the filtering method.<br>
DOI: 10.15468/dl.4phbsj
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinnasa nana"
 ]
}

 The dataset includes 73 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004695-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vscgqz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hexalectris fallax M.I.Rodr. & R.González"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242354-230224095556074/datasets/export for details.
DOI: 10.15468/dl.6jveu8
title: Occurrence Download

description: A dataset containing 2266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triatoma brasiliensis Neiva, 1911",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 2266 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069457-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxxru6
title: Occurrence Download

description: A dataset containing 16189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "TaxonKey is Buteo buteo (Linnaeus, 1758)",
 "Year 1990-2023"
 ]
}

 The dataset includes 16189 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240557-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ug5zjd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hewittia puccioniana (Chiov.) Verdc."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242346-230224095556074/datasets/export for details.