cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/qsh-fa6-68g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16592693.v1
title: ref_LCMV_CD4_mouse_release_v1.rds

description: GP66:I-A<sup>b+</sup> spleen T cells were sorted from LCMV infected animals either 7 or 21 days after Clone 13 infection, conditions referred to as Early and Late Chronic. In addition, similar populations were isolated 7, 21 and &gt;60 days after LCMV Armstrong infection (samples referred to as Acute, Early and Late Memory, respectively). A total of 11 datasets were processed with droplet-based (10x Chromium) single-cell RNA sequencing resulting in over 35,000 high-quality virus-specific CD4<sup>+ </sup>T cell transcriptomes. In addition, selected samples were used to measure simultaneously TCR usage and transcriptome at the single-cell resolution. For the construction of the CD4+ T cell reference atlas, datasets were downsampled to balance the contribution from different types of infection and time point. To this end, a maximum of 5,000 cells were randomly selected for each of the 5 subsets: acute day7, acute day21, acute day60, chronic day7 and chronic day21. To mitigate batch effects between samples, we integrated the 11 samples using STACAS (Andreatta & Carmona 2020) with the following parameters: number of variable genes=800, dist.thr=0.6, dims=20. On the integrated data, unsupervised clusters were calculated using the <i>FindNeighbors</i> and <i>FindClusters</i> functions from Seurat (Hao et al. 2021) with parameters: k.parameter=10, resolution=0.4. Finally, unsupervised clusters were manually annotated to obtain nine “functional clusters” that summarize the diversity of CD4<sup>+ </sup>T cells in acute and chronic infection. The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021). Sequencing data underlying this object can be obtained at NCBI GEO under accession number GSE182320.
DOI: 10.6084/m9.figshare.6002177.v1
title: Statistics of reference genome

description: The details of the sugar beet reference genome used for alignment are displayed herein including the total number of the assembled genomic sequences, the total length of the assembled genomic sequence, the percentage GC content, the proportion of unknown sequence, the length of the scaffold N50 and scaffold N90.
DOI: 10.3535/kbe-p54-gbj
title: Opal

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s9l-mjt-hh9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1394678.v1
title: Multiarray EMG data, finger presses

description: EMG finger press data for classification.
DOI: 10.6084/m9.figshare.22461901.v1
title: National Seashore and Estuary CBA Map

description: This dataset is the first version of a national CBA Map developed for the South African seashore (backshore and shore) and estuaries, aiming to align land-based and marine CBA Maps at the land-sea (including estuaries) interface. It was developed by doing cross-realm biodiversity planning for the coastal zone (using Marxan), extracting the seashore and estuaries, and systematically allocating areas to the different CBA Map categories. Because this is the first time this product has been developed, it is provided as a beta version for testing by biodiversity planners in South Africa.
DOI: 10.6084/m9.figshare.7577795.v1
title: Dataset 20190111

description: Involvement of gliadin in increased intestinal permeability leading to NSAID-induced small-intestinal damage<br>
DOI: 10.6084/m9.figshare.c.3685249_d2.v1
title: Additional file 4: Table S4. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The upregulated and downregulated pathways during osteogenic differentiation of BMSCs. (XLS 33 kb)
DOI: 10.3535/90s-58m-yxp
title: Astrophyllite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3556923.v1
title: Appendix B. Methods and results for soil analyses conducted at the onset of the experiment, one year, and two years after fertilization.

description: Methods and results for soil analyses conducted at the onset of the experiment, one year, and two years after fertilization.
DOI: 10.3535/5gz-agt-naq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6dz-kp2-39p
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14783850.v1
title: Direct association between rainfall and non-typhoidal Salmonella bloodstream infections in hospital-admitted children in the Democratic Republic of Congo

description: Dataset used for analysis in "Direct association between rainfall and non-typhoidal Salmonella bloodstream infections in hospital-admitted children in the Democratic Republic of Congo" written by Tack et al
DOI: 10.3535/j3l-zz0-jkl
title: Grossular

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x49-asn-xnh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26880901.v1
title: Prompts and interactions with the Claude AI tool that underpin the manuscript "Reliance on Artificial Intelligence Tools May Displace Research Skills Acquisition Within Engineering Doctoral Programmes: Examples and Implications"

description: These PDF transcripts record the prompting interaction with Claude Sonnet 3.5 which underpins certain results in a manuscript initially submitted as :<br><br>“<i>Reliance on Artificial Intelligence Tools May Displace Research Skills Acquisition Within Engineering Doctoral Programmes: Examples and Implications</i>”<br>Yevhenii Mormul , Jan Przybyszewski, Andrew Nakoud and Paul Cuffe
DOI: 10.3535/80f-ld2-xp7
title: metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fdx-9lx-4ep
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21679919.v1
title: Fasta files of the representative P. aeruginosa genomes

description: Fasta files of the 18 representative P. aeruginosa assemblies
DOI: 10.6084/m9.figshare.c.3812668_d5.v1
title: MOESM3 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 3. Luciferase reporter assay results of G4 DNA sequences cloned in pGL4.10 vector.
DOI: 10.3535/6ga-dhd-h8z
title: metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sxq-jhm-dyx
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11309624.v2
title: Acitgraphy and oxytocin in alcohol withdrawal

description: All data for manuscript<br><br>
DOI: 10.6084/m9.figshare.11750061.v1
title: Brazilian Legal Proceedings

description: Our data is composed by two datasets: a dataset of 3*10^6 unlabelled motions (mov_treino.txt) and a dataset containing legal proceedings (mov.txt), each with an individual and variable number of motions, but which have been labeled by law experts (tags.txt). They were labeled in 3 classes: arquivado (archived), ativo (active), suspenso (suspended). These datasets are random samples from the first (São Paulo) ans third (Rio de Janeiro) biggest State Courts. State Courts handle the most variable types of cases throughout the Courts in Brazil, and are responsible for 80% of the total amount of lawsuits. Therefore, these datasets are representative of a very significative portion of the variable use of language and expressions in Courts vocabulary.
DOI: 10.6084/m9.figshare.12625085.v6
title: SI Data 2

description: Raw data and Prism statistical analysis files for Fig S1 to Fig S7<br>
DOI: 10.6084/m9.figshare.24599844.v4
title: <b>Unveiling the Relationship between Narcissistic Admiration, Narcissistic Rivalry, and Self-Control: Evidence from Structural Equation Modeling and MMM Design</b>

description: study 1 and study 2
DOI: 10.3535/420-41a-47n
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8je-ej3-xls
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rf3-p10-5m2
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yl5-n74-wsk
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8z8-tvz-6wz
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a9k-037-wpz
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12896336.v1
title: Orchids 52 Dataset

description: The Orchids 52 dataset is the orchid flowers selected from the northern part of Thailand. The dataset contains Thai native orchid flowers, and each class contains at least 20 samples. The orchid dataset, including 52 species and the flower's visual characteristics are varying in terms of shape, color, texture, flower size, and the other parts of the orchid plant like a leaf, inflorescence, roots, and surroundings. All images are taken from many devices such as a digital camera, a mobile phone, and other equipment. The orchids dataset contains 3,559 flower images from 52 categories.<br>Please remember cited the paper correctly: "Orchids Classification Using Spatial Transformer Network with Adaptive Scaling."<br>Cite this paper as:Sarachai W., Bootkrajang J., Chaijaruwanich J., Somhom S. (2019) Orchids Classification Using Spatial Transformer Network with Adaptive Scaling. In: Yin H., Camacho D., Tino P., Tallón-Ballesteros A., Menezes R., Allmendinger R. (eds) Intelligent Data Engineering and Automated Learning – IDEAL 2019. IDEAL 2019. Lecture Notes in Computer Science, vol 11871. Springer, Cham. https://doi.org/10.1007/978-3-030-33607-3_1<br>BibTeX:@InProceedings{w_sarachai,author="Sarachai, Watcharinand Bootkrajang, Jakramateand Chaijaruwanich, Jeerayutand Somhom, Samerkae",editor="Yin, Hujunand Camacho, Davidand Tino, Peterand Tall{\'o}n-Ballesteros, Antonio J.and Menezes, Ronaldoand Allmendinger, Richard",title="Orchids Classification Using Spatial Transformer Network with Adaptive Scaling",booktitle="Intelligent Data Engineering and Automated Learning -- IDEAL 2019",year="2019",publisher="Springer International Publishing",address="Cham",pages="1--10",isbn="978-3-030-33607-3"}
DOI: 10.3535/jmb-7nz-mpt
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r2h-r2d-b5h
title: †Ilionia prisca (Hisinger, 1837)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17012558.v2
title: Gut microbiota in mucosa and feces of newly diagnosed, treatment-naïve adult inflammatory bowel disease and irritable bowel syndrome patients

description: <br> For more details see DOI: 10.1080/19490976.2022.2083419 <br> 16S rRNA gene amplicon V3-V4 sequencing performed on Illumina Mi-Seq with Nextera XT kit, processed with QIIME pipeline. Faecal and gut mucosa samples of adult, treatment-naive IBD and IBS patients, as well as faecal samples of healthy volunteers.<br>
DOI: 10.3535/01e-2hx-9bc
title: igneous- and metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wpz-gws-s0g
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10319810.v1
title: On <i>Targaryendraco wiedenrothi</i> gen. nov. (Pterodactyloidea, Pteranodontoidea, Lanceodontia) and recognition of a new cosmopolitan lineage of Cretaceous toothed pterodactyloids

description: <i>Ornithocheirus wiedenrothi</i>, from the Hauterivian (Early Cretaceous of Germany), is a taxon represented by three-dimensional remains of the lower jaw and wing elements. Its phylogenetic affinities have for long been elusive, though several works had already pointed out that it probably did not belong within the wastebasket genus <i>Ornithocheirus</i>. In the present contribution, we redescribe this species, assigning it to the new genus <i>Targaryendraco</i> and offering updated morphological comparisons. Subsequently, we present a phylogenetic analysis in which we recover a clade formed by <i>Targaryendraco, Aussiedraco, Barbosania, Aetodactylus, Camposipterus</i> and <i>Cimoliopterus</i>. This newly recognised clade is interesting in being quite cosmopolitan and spanning from the Hauterivian to the Cenomanian, like its sister-group, the Anhangueria. The recognition of this clade helps fill the temporal gap between the Anhangueria and <i>Cimoliopterus</i>, and also demonstrates that the diversity of Cretaceous toothed pterosaurs was higher than previously thought.
DOI: 10.6084/m9.figshare.13246841.v1
title: Data file 4 - Organelle database

description: NCBI queries to download and build the organellar protein database used with tag-loc-ids.pl.<br>
DOI: 10.6084/m9.figshare.28255967.v1
title: Bone Forcep Compression Data.xlsx

description: This project was intended to measure compression generated by varying bone forceps when using for reduction of lateral condylar fractures in immature canine patients.
DOI: 10.17632/7tgzczrs39
title: Data for: Triple oxygen isotopes of cherts through time

description: Data accompanying the publication
DOI: 10.3535/e2m-rpm-44x
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lct-fkt-x8f
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kj5-8q1-3mn
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wgw-l8t-kpr
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6276176.v1
title: Full surface MIR-reflectance spectra Allende and NWA6966

description: This files contains the data behind the mid-IR reflectance spectra from full surface scans in the paper. Note-mixed spectra were not used in the paper, but are available here.
DOI: 10.3535/td8-w0g-mps
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7326536.v2
title: Quantitative characteristics and relative coordiantes of Stipa breviflora in desert steppe, China

description: Ten 50 × 50-cm quadrats were randomly positioned to record species name, height, density, and cover in each plot. Then the standing biomass was clipped at the soil surface, oven-dried at 65°C, and weighed. One 2 × 2-m quadrat was selected in each plot that stocking rates were 0, 0.91, 1.82, 2.71 sheep·hm<sup>-2</sup>·half y<sup>-1</sup> representing no grazing (CK), light grazing (LG), moderate grazing (MG), and heavy grazing (HG), respectively in desert steppe of north China. In this quadrat, a 1 × 1-m quadrat frame with 10 × 10-cm grids was placed 4 times from left to right and from top to bottom of the quadrat sequentially, and a tape measure used to identify the precise spatial locations of <i>S. breviflora </i>in the quadrat. The origin of coordinates was defined as the upper left corner of the quadrat.
DOI: 10.3535/hfs-xvm-d25
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ymc-ner-2qx
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20021475.v1
title: Correlation between the hearing loss classifications and speech recognition

description: Purpose to check the correlation between Speech Reception Threshold and Index of Speech Recognition with mean audiometric results. Methods we selected 241elderly patients who underwent examinations of the pure tone audiometry and speech audiometry. As inclusion, audiometry should have a sensorineural hearing loss. The tone thresholds for air obtained were classified according with the following averages: Average 1 – Average of frequencies of 500, 1000 and 2000 Hz; Average 2 – Average of frequencies of 500, 1000, 2000 and 4000 Hz; Average 3 – average of frequencies of 500, 1000, 2000 and 3000 Hz; and 4 average – average of frequencies of 500, 1000, 2000, 3000 and 4000 Hz. The data were compared with Speech Reception Threshold and Index of Speech Recognition, and treated statistically. Results Average 1 showed higher correlation with the Speech Reception Threshold (rho = 0.934, CI = 0.901 to 0.958; eqm = 52.2). In relation to the Index of Speech Recognition, it was observed that the average 3 showed the highest degree of correlation with the test (rho = – 0.768, CI = –0.807 to –0.721; eqm = 245) followed averages 2 and 4. Conclusion for elderly people with ski slop sensorineural hearing loss, the Speech Reception Threshold has the strongest correlation with the average frequencies 500 Hz, 1000 Hz and 2000 Hz, while the Index of Speech Recognition has the highest correlation with the average which include the frequencies 3000 Hz and 4000 Hz.
DOI: 10.25417/uic.24002007.v1
title: Mobile Health Intervention in Patients With Type 2 Diabetes (NIDDK R01 Data and Metadata)

description: Description: A clinical trial was conducted to determine whether clinical pharmacists and health coaches using mHealth tools can improved hemoglobin A1c levels. This study randomized 221 African American or Latinx patients with type 2 diabetes and elevated A1c from an academic medical center in Chicago. Adults aged 21-75 were enrolled and randomized to either: (1) intervention group receiving mHealth diabetes support for 1 year followed by usual diabetes care during a second year (follow up duration 24 months), or (2) wait-list control group receiving usual diabetes care for 1 year followed by the mHealth diabetes intervention a second year. The mHealth intervention included remote support from clinical pharmacists via video telehealth and health coach activities that occurred in person at participant homes and via phone calls and text messaging. This dataset includes primary outcome (A1c) and secondary outcomes, such as blood pressure, cholesterol, body mass index, health-related quality of life, diabetes distress, diabetes self-efficacy, depressive symptoms, social support, medication taking behavior, and diabetes self-care, measured every 6 months.
DOI: 10.3535/2ww-w0e-112
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xsk-52d-qcl
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4697539.v2
title: RNA-sequencing of Lymph, Spleen, and Thymus Transcriptome of Peninsular Malaysia M. fascicularis

description: Raw paired end sequencing reads derived from lymph, spleen, and thymus tissues harvested from wild Peninsular Malaysia macaque individuals (<i>Macaca fascicularis</i>)
DOI: 10.3535/1q6-egk-ehf
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ns7-nah-5xq
title: †Eunema Salter, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pev-mkq-31w
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.749690.v2
title: Season total densities of arthropods (total and individual groups) on caged & control branches in four vertical strata

description: Data from a 2007 field study in the Morgan Arboretum, Ste-Anne-de-Bellevue, Québec. Associated with a published paper (https://peerj.com/articles/138/). This dataset has 11 columns and 160 rows of data. Column titles: TRT = cage (caged branch) or control (no cage) Stratum = one of four vertical strata (UN = understory; LC = lower canopy; MC = mid canopy; UC = upper canopy) Rep = tree identity; 20 mature sugar maple trees were used, with control and caged branches in each stratum (i.e. 8 branches per tree) The next 8 columns contain the densities of the various groups on each branch. Note that density is provided as individuals per gram of dry leaf weight. ART = all arthropods combined Ara = spiders (Araneae) Col = beetles (Coleoptera) Der = earwigs (Dermaptera) Hem = true bugs (Hemiptera) Hym = ants, bees & wasps (Hymenoptera) Lep = caterpillars (Lepidoptera) Opi = harvestmen (Opiliones) Note that two branches contain NAs - the cages on these branches were lost during the study.
DOI: 10.6084/m9.figshare.8220689.v3
title: Measurement Error Without the Proxy Exclusion Restriction

description: <b><i>Abstract–</i>This article studies the identification of the coefficients in a linear equation when data on the outcome, covariates, and an error-laden proxy for a latent variable are available. We maintain that the measurement error in the proxy is classical and relax the assumption that the proxy is excluded from the outcome equation. This enables the proxy to directly affect the outcome and allows for differential measurement error. Without the proxy exclusion restriction, we first show that the effects of the latent variable, the proxy, and the covariates are not identified. We then derive the sharp identification regions for these effects under any configuration of three auxiliary assumptions. The first weakens the assumption of no measurement error by imposing an upper bound on the noise-to-signal ratio. The second imposes an upper bound on the outcome equation coefficient of determination that would obtain had there been no measurement error. The third weakens the proxy exclusion restriction by specifying whether the latent variable and its proxy affect the outcome in the same or the opposite direction, if at all. Using the College Scorecard aggregate data, we illustrate our framework by studying the financial returns to college selectivity and characteristics and student characteristics when the average SAT score at an institution may directly affect earnings and serves as a proxy for the average ability of the student cohort.</b>
DOI: 10.3535/0qh-wvm-rqv
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/53h-kbk-5m6
title: †Phymatopleuridae Batten, 1956

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.