cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0zpc866vh
title: Amplicon sequence variants by sample table from Antarctic methane seeps

description: Antarctica is estimated to contain as much as a quarter of earth's
 marine methane, however we have not discovered an active Antarctic methane
 seep limiting our understanding of the methane cycle. In 2011, an
 expansive (70m x 1m) microbial mat formed at 10m water depth in the Ross
 Sea, Antarctica and we carried out 16S rRNA gene analysis on samples
 collected one year and five years after the methane seep formed. 
 The data set attached is the resulting Amplicon Sequence Variant table by
 sample that we used to track the community composition change during this
 time and in comparison to other sampling in the McMurdo sound
 region.  
description: To identify the microbial community of the Cinder Cones Seep
 (CCS; 77° 47.998' S 166° 40.241' E), sediment cores were
 collected using SCUBA. Sampling points were randomly distributed within
 patches of white, putative sulfur-oxidizing filamentous bacteria in 2012
 (n=3) and 2016 (n=12). Cores were also collected within 2m of the seep
 (called <i>Reference;</i> n=4) and at <i>Control
 </i>locations that were downslope, away from seep influence at
 Cinder Cones and 2 additional sites within McMurdo sound (‘Jetty’: 77°
 51.101' S 166° 39.933' E and ‘Turtle Rocks’: 77° 44.615' S
 166° 46.297' E; n= 3 at all control sites which were sampled at 20m
 water depth). A shallow linear microbial mat was also sampled, however
 with a single core so it is not included in quantitative statistical
 analysis. Cores were transported at in situ temp
 (-1.8<sup>o</sup>C) to McMurdo Station and sliced vertically
 (intervals given in Figure 4) and the sediment was frozen at
 -80<sup>o</sup>C for microbial characterization. A subset of
 cores had sequential 3cm deep subcores taken vertically for methane
 analysis and preserved as described below. <i>DNA
 </i>was extracted from<i> </i>between 0.25 and 0.5 grams
 of sediment using the MoBio (now Qiagen) DNeasy PowerSoil kit following
 manufacturer protocols. Earth Microbiome Project (EMP) Protocols were
 followed  including amplification with the 515f and 806rb primers. For
 amplicon sequence variant identification, we used forward reads generated
 on an Illumina MiSeq (V.2 chemistry and 2x250 paired end sequencing),
 trimmed to 250 bp and quality filtered using default parameters in
 QIIME2 2019.10
 [29]. Amplicon Sequence Variants (ASVs) were identified using Deblur within Qiime2, and taxonomy assigned by comparison to the Silva v123 database formatted for QIIME (NCBI SRA archive PRJNA387720).  Data analysis pipeline is included as suplamentary material in the manuscript and attached to this dataset.
DOI: 10.15468/dl.kp6prx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is one of (K-M000955040, K-M000773932, K-M000177251, K-M000081495, K-M000769762)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002413-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.547d7wm5s
title: Continuous petal variation in Epimedium tianmenshanense (Berberidaceae), a species endemic to western Hunan, China

description: Epimedium tianmenshanense (Berberidaceae), a species endemic to western
 Hunan, China, was found to be highly variable in floral characteristics.
 In the protologue, its characteristics were described as “flower small,
 0.2-0.4 cm diam., inner sepals white, petals as long as inner sepals or a
 little shorter than the latter, spur very short, ca. 5.0 mm”. However,
 both morphological characteristics and molecular evidence proves that E.
 tianmenshanense is closely related to E. baojingense, a taxon with a long
 spur.  Based on careful observation in the field and cultivation,
 the petals were found to be highly variable in morphology (both shape and
 size), being cucullate, subulate, short to long spurred, and with various
 transitions. The flowers size varied from small to large accordingly. The
 flowers with cucullate and subulate petals, which were a little shorter
 than the inner sepals or almost as long as the latter, were small (about
 0.8 cm in diameter). The flowers with long spurs, which were much longer
 than the inner sepals, were large (about 2.5–3.5 cm in diameter). Finally,
 the flowers with short spurs, which were a little longer than the inner
 sepals, were medium-sized (about 1.0–1.2 cm in diameter). In addition, the
 color of inner sepals was revised from “white, occasionally light
 mulberry-purple” to yellowish green or yellowish white. Epimedium
 tianmenshanense is a perfect example of natural petal evolution, which
 could be used for further taxonomic and evolutionary studies. The reason
 for the variation and the taxonomic treatment of the species still need
 further study.
DOI: 10.5061/dryad.qv9s4mwbs
title: Data from: A meta-analysis of global avian survival across species and latitude

description: Tropical birds are thought to be longer lived than many temperate species.
 We explored the idea of higher survival at tropical latitudes and whether
 extrinsic climate factors and intrinsic traits helped explain this pattern
 using a meta-analytical approach. The dataset consists of 949 estimates
 from 204 studies of avian survival from both New World and Old World
 biogeographical realms.
description: Data were collected from the primary literature using Web of
 Science Core Collections and Google Scholar. We extracted data on survival
 and its associated standard error from each paper, as well as information
 on the study location and species intrinsic traits. When information on
 species traits was not included in the publication, we used data from
 standard reference databases (i.e., Handbook of Birds of the World, Elton
 Traits database). All climatic variables were downloaded from
 WorldClim.
description: The column entitled 'auk_used' refers to studies that
 were conducted over broad-spatial scales. In these cases, we used the
 <em>R </em>package <em>auk</em> to delineate
 species ranges based on eBird records. We then took the centroid of the
 breeding range as the latitude and longitude for that species. When
 multiple estimates on adult survival were available from the same paper,
 we took the geometric mean of those estimates (see column geomean_used). 
 Detailed information on how we assembled the dataset can be found under
 the methods section in the associated Ecology Letters
 publication.
DOI: 10.5061/dryad.cfxpnvx36
title: Data from: Moderate grazing increased alpine meadow soils bacterial abundance and diversity index on the Tibetan Plateau

description: The response of grassland soil bacterial community characteristics to
 different grazing intensities are central ecological topics. However, the
 underlying mechanisms between bacterial abundance, diversity index, and
 grazing intensity remain unclear. We measured alpine meadow soil bacterial
 gene richness and diversity index under four grazing intensities using 16S
 rDNA sequence analysis on the Tibetan Plateau. The results suggest that
 extreme grazing significantly decreased alpine meadow both bacterial gene
 abundance and diversity index (P&lt;0.05). The lowest operational
 taxonomic unit numbers were 3012 ± 447 copies under heavy grazing in the
 growing season. It was significantly lower than heavy grazing with
 approximately 3958 ± 119 copies (P&lt;0.05). The Shannon index for
 medium and high grazing grassland bacterial diversity was slightly higher
 than for light grazing in the growing season. Furthermore, the lowest
 index was approximately 9.20 ± 0.50 for extreme grazing of grassland in
 the growing season. The average bacterial gene abundance and diversity
 index in the dormancy period was slightly higher than that in the growing
 season. Soil bulk density, pH, ammonium and nitrate nitrogen were the main
 positive factors driving grazed grassland bacterial communities. Our study
 provides insight into the response of alpine meadows to grazing intensity,
 demonstrating that moderate grazing increases bacterial community
 diversity in grazed grasslands.
DOI: 10.5061/dryad.fn2z34trc
title: Herbivory Improves the Fitness of Predatory Beetles

description: While many predatory arthropods consume non-prey foods from lower trophic
 levels, little is known about what drives the shift from predator to
 omnivore. Predatory lady beetles often consume non-prey foods like plant
 foliage and pollen. One species, Coccinella septempunctata, eats foliage
 to redress sterol deficits caused by eating sterol-deficient prey. Here we
 explore how omnivory benefits lady beetle fitness. We reared seven species
 of lady beetles – from five genera distributed across the tribe
 Coccinellini – on pea aphids in the presence or absence of fava bean
 foliage; pea aphids have very low sterol content. Foliage supplements
 lengthened the development times of four species and decreased survival to
 adulthood of two species; it had no effect on adult mass. We mated beetles
 in a 2x2 factorial design (males with or without foliage paired with
 females with or without foliage). For each species, we observed a profound
 paternal effect of foliage supplements on fitness. Females mated to
 foliage-supplemented males laid more eggs and more viable eggs compared to
 females mated to non-supplemented males. Foliage-supplemented males
 produced 2.9–4.6 times more sperm compared to non-supplemented males for
 the three species examined. We analyzed the sterol profile of four beetle
 species reared on pea aphids – with or without foliage – and compared
 their sterol profile to field-collected adults. For two lab-reared
 species, sterols were not detected in adult male beetles, and overall
 levels were generally low (total ng of sterol/beetle range: 3-33 ng); the
 exception being P. quatuordecimpunctata females (total ng of sterol/beetle
 range: 50-157 ng). Laboratory-reared lady beetle sterol content was not
 significantly affected by the presence of foliage. Field-collected beetles
 had higher levels of sterols compared to lab-reared beetles (2,452–145,348
 ng per beetle); cholesterol and sitosterol were the dominant sterols in
 field-collected and lab-reared beetles. Our findings indicate that
 herbivory benefits lady beetle fitness across the Coccinellini, and that
 this was entirely a paternal effect. Our data provides a rare example of a
 nutritional constraint impacting fitness in a sex-specific manner. It also
 shows, more broadly, how a nutritional constraint can drive predators
 toward omnivory. 17-Jul-2020
DOI: 10.5061/dryad.3r2280gd9
title: The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species

description: The Pyrenean desman (Galemys pyrenaicus) is a small semiaquatic mammal
 endemic to the Iberian Peninsula. Despite its limited range, this species
 presents a strong genetic structure due to past isolation in glacial
 refugia and subsequent bottlenecks. Additionally, some populations are
 highly fragmented today as a consequence of river barriers, causing
 substantial levels of inbreeding. These features make the Pyrenean desman
 a unique model in which to study the genomic footprints of
 differentiation, bottlenecks and extreme isolation in an endangered
 species. To understand these processes, the complete genome of the
 Pyrenean desman was sequenced and assembled using a Bloom filter-based
 approach. An analysis of the 1.83 Gb reference genome and the sequencing
 of five additional individuals from different evolutionary units allowed
 us to detect its main genomic characteristics. The population
 differentiation of the species was reflected in highly distinctive
 demographic trajectories. In addition, a severe population bottleneck
 during the postglacial recolonization of the eastern Pyrenees created one
 of the lowest genomic heterozygosity values recorded in a mammal.
 Moreover, isolation and inbreeding gave rise to a high proportion of runs
 of homozygosity (ROH). Despite these extremely low levels of genetic
 diversity, two key multigene families from an eco-evolutionary
 perspective, the major histocompatibility complex and olfactory receptor
 genes, showed heterozygosity excess in the majority of individuals,
 revealing that functional diversity can be maintained up to a certain
 extent. Furthermore, these two classes of genes were significantly less
 abundant than expected within ROH. In conclusion, the genomic landscape of
 each analyzed Pyrenean desman turned out to be strikingly distinctive and
 was a clear reflection of its recent ancestry and current conservation
 conditions. These results may help characterize the genomic health of each
 individual, and can be crucial for the conservation and management of the
 species.
description: Galpyr_genotypes.vcf.gz<br> Genotypes of the six
 individuals for autosomal scaffolds larger than 40,000 bp with a minimum
 depth of coverage of 10. Galpyr_commands.txt<br>
 Key commands for the assembly of the reference genome, SNP calling, and
 PSMC analysis.<br>
DOI: 10.5061/dryad.18931zctd
title: Drivers of global variation in land ownership - dataset

description: Land ownership shapes natural resource management and social–ecological
 resilience, but the factors determining ownership norms in human societies
 remain unclear. Here we conduct a global empirical test of long‐standing
 theories from ecology, economics and anthropology regarding potential
 drivers of land ownership and territoriality. Prior theory suggests that
 resource defensibility, subsistence strategies, population pressure,
 political complexity and cultural transmission mechanisms may all
 influence land ownership. We applied multi‐model inference procedures
 based on logistic regression to cultural and environmental data from 102
 societies, 71 with some form of land ownership and 31 with no land
 ownership. We found an increased probability of land ownership in
 mountainous environments, where patchy resources may be more cost
 effective to defend via ownership. We also uncovered support for the role
 of population pressure, with a greater probability of land ownership in
 societies living at higher population densities. Our results also show
 more land ownership when neighboring societies also practiced ownership.
 We found less support for variables associated with subsistence strategies
 and political complexity.
description: The land tenure data (Main_LT) represents the main landownership
 norm which was coded for 102 societies from ethnographic descriptions in
 eHRAF World Cultures (http://ehrafworldcultures.yale.edu/.  All other data were acquired from D-PLACE: https://d-place.org/
description: Please refer to ReadMe file.
DOI: 10.15468/dl.aaucyf
title: Occurrence Download

description: A dataset containing 438224 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swedish Bird Survey: Fixed routes (Standardrutterna)"
 ]
}

 The dataset includes 438224 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009649-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29108924
title: Data for Mkrn3 paper

description: Code for Mkrn3 paper
DOI: 10.5281/zenodo.15579552
title: Supporting Data for "Latent Variable Regression with Observation-Specific Uncertainty Modeling"

description: This archive contains the raw data used in the manuscript titled "Latent Variable Regression with Observation-Specific Uncertainty Modeling".

The data include unprocessed spectral files and original measurements acquired from the TRUST-MDX_240302_MIX sample set.

File types include .csv and .txt formats, accompanied by metadata and reference values (refvalues.txt, refvalues.xlsx) required for preprocessing and calibration.

This dataset is intended for reproducibility and transparency of the results presented in the manuscript. For further processing steps, refer to the associated preprocess_data.m script (available through the associated GitHub repository).
DOI: 10.5281/zenodo.15579553
title: Supporting Data for "Latent Variable Regression with Observation-Specific Uncertainty Modeling"

description: This archive contains the raw data used in the manuscript titled "Latent Variable Regression with Observation-Specific Uncertainty Modeling".

The data include unprocessed spectral files and original measurements acquired from the TRUST-MDX_240302_MIX sample set.

File types include .csv and .txt formats, accompanied by metadata and reference values (refvalues.txt, refvalues.xlsx) required for preprocessing and calibration.

This dataset is intended for reproducibility and transparency of the results presented in the manuscript. For further processing steps, refer to the associated preprocess_data.m script (available through the associated GitHub repository).
DOI: 10.5281/zenodo.15548383
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250529t Preliminary-ExtCoinc

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250529t Preliminary-ExtCoinc. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15548384
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250529t Preliminary-ExtCoinc

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250529t Preliminary-ExtCoinc. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15547047
title: Testing Library Migration with LLM
DOI: 10.5281/zenodo.15547048
title: Testing Library Migration with LLM
DOI: 10.5281/zenodo.18352784
title: SUN'IY INTELLEKT VA AVTOMATLASHTIRISHNING MEHNAT HUQUQIGA TA'SIRI

description:  Mazkur ilmiy maqolada sun’iy intellekt (SI) va avtomatlashtirish texnologiyalarining jadal rivojlanishi sharoitida mehnat huquqining mazmuni va ahamiyati tubdan o‘zgarib borayotgani ilmiy-huquqiy jihatdan tahlil qilinadi. Tadqiqot davomida zamonaviy texnologiyalar ta’sirida mehnat munosabatlarining transformatsiyasi, an’anaviy bandlik shakllarining qisqarishi va yangi mehnat modellari paydo bo‘lishi masalalari yoritilgan. Shuningdek, algoritmik boshqaruv, masofaviy mehnat va platformaviy bandlik sharoitida xodimlarning huquqiy holati, ularning mehnat huquqlari va ijtimoiy kafolatlarini ta’minlash masalalariga alohida e’tibor qaratilgan. Maqolada sun’iy intellektdan foydalanish natijasida yuzaga kelishi mumkin bo‘lgan huquqiy xavflar va ularni bartaraf etish yo‘llari asoslab berilgan hamda mehnat qonunchiligini takomillashtirish bo‘yicha ilmiy taklif va xulosalar ilgari surilgan.
DOI: 10.5281/zenodo.18352783
title: SUN'IY INTELLEKT VA AVTOMATLASHTIRISHNING MEHNAT HUQUQIGA TA'SIRI

description:  Mazkur ilmiy maqolada sun’iy intellekt (SI) va avtomatlashtirish texnologiyalarining jadal rivojlanishi sharoitida mehnat huquqining mazmuni va ahamiyati tubdan o‘zgarib borayotgani ilmiy-huquqiy jihatdan tahlil qilinadi. Tadqiqot davomida zamonaviy texnologiyalar ta’sirida mehnat munosabatlarining transformatsiyasi, an’anaviy bandlik shakllarining qisqarishi va yangi mehnat modellari paydo bo‘lishi masalalari yoritilgan. Shuningdek, algoritmik boshqaruv, masofaviy mehnat va platformaviy bandlik sharoitida xodimlarning huquqiy holati, ularning mehnat huquqlari va ijtimoiy kafolatlarini ta’minlash masalalariga alohida e’tibor qaratilgan. Maqolada sun’iy intellektdan foydalanish natijasida yuzaga kelishi mumkin bo‘lgan huquqiy xavflar va ularni bartaraf etish yo‘llari asoslab berilgan hamda mehnat qonunchiligini takomillashtirish bo‘yicha ilmiy taklif va xulosalar ilgari surilgan.
DOI: 10.15468/dl.r64rtw
title: Occurrence Download

description: A dataset containing 871 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((117.989 5.94014, 117.918361 5.934569, 117.849465 5.917994, 117.784013 5.890824, 117.723619 5.853729, 117.669772 5.807625, 117.623797 5.753649, 117.586828 5.693131, 117.559771 5.627564, 117.54329 5.558564, 117.537788 5.48783, 117.543395 5.417104, 117.559971 5.348127, 117.587103 5.282597, 117.624121 5.222126, 117.670111 5.168201, 117.723942 5.122149, 117.784288 5.085101, 117.849665 5.057967, 117.918466 5.041416, 117.989 5.035853, 118.059534 5.041416, 118.128335 5.057967, 118.193712 5.085101, 118.254058 5.122149, 118.307889 5.168201, 118.353879 5.222126, 118.390897 5.282597, 118.418029 5.348127, 118.434605 5.417104, 118.440212 5.48783, 118.43471 5.558564, 118.418229 5.627564, 118.391172 5.693131, 118.354203 5.753649, 118.308228 5.807625, 118.254381 5.853729, 118.193987 5.890824, 118.128535 5.917994, 118.059639 5.934569, 117.989 5.94014))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 871 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007637-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kk3fd
title: Occurrence Download

description: A dataset containing 5815825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.62423 43.48026,-72.96211 43.48026,-72.96211 45.12931,-73.62423 45.12931,-73.62423 43.48026))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1980-2026"
 ]
}

 The dataset includes 5815825 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007562-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18352735
title: Analisis kebutuhan sarana prasarana kota palu
DOI: 10.5281/zenodo.18352734
title: Analisis kebutuhan sarana prasarana kota palu
DOI: 10.15468/dl.9s4973
title: Occurrence Download

description: A dataset containing 1323 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is KU Leuven, Zoology Museum, Bird collection (Aves)"
 ]
}

 The dataset includes 1323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007638-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ect9bx
title: Occurrence Download

description: A dataset containing 12060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salilota australis",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 12060 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007636-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.