cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17140061
title: Altered bile acids profile associates with hyperandrogenism in lean women with PCOS: a potential role for BA alternative pathway activated in the liver

description: Comparison of bile
acids concentration in serum from controls with lean women with PCOS
DOI: 10.6084/m9.figshare.11897244
title: The Prognostic Value of External <i>vs</i> Internal Pancreatic Duct Stents in CR-POPF after Pancreaticoduodenectomy: A Systematic Review and Meta-analysis

description: There is no specific evidence regarding the benefits of external and internal pancreatic duct stents after pancreaticoduodenectomy since pancreatic fistula (grade A) have been redefined with no clinical treatment effect. We aimed to reevaluate the prognostic value of external and internal stents in clinically relevant postoperative pancreatic fistula over pancreaticoduodenectomy. PubMed, Web of Science, EMBASE and the Cochrane Database were specifically searched for pertinent and original articles published before May 2019. The project has been registered in PROSPERO (Registration number: CRD42019137579). Four randomized controlled trials and six nonrandomized controlled trials with a total of 2101 patients were enrolled in this meta-analysis. The use of an external stent resulted in better performance than the use of an internal stent in terms of pancreatic fistula (grade C) (OR 0.58, <i>P</i> = 0.03) but did not reduce the rate of pancreatic fistula (grade B) (OR 0.99, <i>P</i> = 0.94) in all studies. The meta-analysis of randomized controlled trials found that the use of an external stent approached a level of significance for an increased rate of clinically relevant postoperative pancreatic fistula compared to the use of an internal stent (OR 1.40, <i>P</i> = 0.10) but had no significant effect on pancreatic fistula (grade B) (OR 1.34, <i>P</i> = 0.26) or pancreatic fistula (grade C) (OR 1.68, <i>P</i> = 0.62). Compared with internal stents, the use of external stent might be associated with a lower rate of pancreatic fistula (grade C). More randomized clinical trials are warranted to further explore safety and efficacy of pancreatic duct external stents.
DOI: 10.6084/m9.figshare.11897244.v1
title: The Prognostic Value of External <i>vs</i> Internal Pancreatic Duct Stents in CR-POPF after Pancreaticoduodenectomy: A Systematic Review and Meta-analysis

description: There is no specific evidence regarding the benefits of external and internal pancreatic duct stents after pancreaticoduodenectomy since pancreatic fistula (grade A) have been redefined with no clinical treatment effect. We aimed to reevaluate the prognostic value of external and internal stents in clinically relevant postoperative pancreatic fistula over pancreaticoduodenectomy. PubMed, Web of Science, EMBASE and the Cochrane Database were specifically searched for pertinent and original articles published before May 2019. The project has been registered in PROSPERO (Registration number: CRD42019137579). Four randomized controlled trials and six nonrandomized controlled trials with a total of 2101 patients were enrolled in this meta-analysis. The use of an external stent resulted in better performance than the use of an internal stent in terms of pancreatic fistula (grade C) (OR 0.58, <i>P</i> = 0.03) but did not reduce the rate of pancreatic fistula (grade B) (OR 0.99, <i>P</i> = 0.94) in all studies. The meta-analysis of randomized controlled trials found that the use of an external stent approached a level of significance for an increased rate of clinically relevant postoperative pancreatic fistula compared to the use of an internal stent (OR 1.40, <i>P</i> = 0.10) but had no significant effect on pancreatic fistula (grade B) (OR 1.34, <i>P</i> = 0.26) or pancreatic fistula (grade C) (OR 1.68, <i>P</i> = 0.62). Compared with internal stents, the use of external stent might be associated with a lower rate of pancreatic fistula (grade C). More randomized clinical trials are warranted to further explore safety and efficacy of pancreatic duct external stents.
DOI: 10.4121/b9896e32-e99b-41b9-ae24-1700b9e4cbff
title: Script underlying the paper "Phase-Space Discontinuous Galerkin Scheme for the Radiative Transfer Equation in Slab Geometry"

description: *** Solver for a phase-space Discontinuous Galerkin discretization for radiative transfer in slab-geometry ***authors: R. Bardin, F. Bertrand, O. Palii, M. Schlottbom corresponding author: Matthias Schlottbom, University of Twente, m.schlottbom@utwente.nl<br>We implement a symmetric interior penalty discontinuous Galerkin scheme for the approximation of the second-order form of the radiative transfer equation in slab geometry, using different polynomial degrees and quad-tree grids, which allow for local refinement in phase-space. We implement hierarchical error estimators.<br>*** Scientific reference ***R. Bardin, F. Bertrand, O. Palii, M. Schlottbom <em>A Phase-Space Discontinuous Galerkin Scheme for the Radiative Transfer Equation in Slab Geometry.</em>Computational Methods in Applied Mathematics, 2024. doi: <em>10.1515/cmam-2023-0090</em>When using this code, cite that paper.<br><br>*** Description ***For using the code, unzip the repository and run run.m. In lines 8-15, there are parameters regarding the solvers, test cases, and mesh refinement routines used.<br><br>
DOI: 10.6084/m9.figshare.16615866
title: Prevalence and identification of tick species on large ruminants from district Rajanpur in Punjab Pakistan

description: Ticks are most prevalent vectors for the transmission of tick-borne diseases to animals (both wild and domesticated) as well as humans. Due to the favourable subtropical conditions of Pakistan, ticks are abundant and parasitize ruminants resulting in their morbidity and mortality causing economic losses to owners. In the present study, a total of 991 ticks from bovines (n = 690 from cattle; n = 301 from buffaloes) were collected during July to October 2019 from six sampling sites in Rajanpur District to report identification and prevalence of collected tick species. During the current investigation, 16 species of ticks belonging to 3 genera were identified: <i>Hyalomma</i> (<i>Hy</i>.) <i>anatolicum, Hy. excavatum, Hy. dromedarii, Hy. impeltatum, Hy. marginatum, Hy. impressum, Hy. scupense, Hy. rufipes, Hy. detritum, Hy. truncatum, Rhiphicephalus</i> (<i>Rh</i>.) <i>sanguineus, Rh. turanicus, Rh. annulatus, Rh. parvas, Ixodes</i> (<i>Ix</i>.) <i>pilosus</i> and <i>I. ricinus. Hyalomma</i> ticks were most prevalent (85%) followed by <i>Rhipicephalus</i> (10%) and <i>Ixodes</i> (4%) on enrolled animals. Tick prevalence varied between sampling sites (P = 0.007). Tick infestation was significantly higher (P &lt; 0.001) in cattle (70%) than buffaloes (30%). Udder was the most preferred site of tick infestation in enrolled animals (P &lt; 0.05) as compared to other predilection sites.
DOI: 10.6084/m9.figshare.16615866.v1
title: Prevalence and identification of tick species on large ruminants from district Rajanpur in Punjab Pakistan

description: Ticks are most prevalent vectors for the transmission of tick-borne diseases to animals (both wild and domesticated) as well as humans. Due to the favourable subtropical conditions of Pakistan, ticks are abundant and parasitize ruminants resulting in their morbidity and mortality causing economic losses to owners. In the present study, a total of 991 ticks from bovines (n = 690 from cattle; n = 301 from buffaloes) were collected during July to October 2019 from six sampling sites in Rajanpur District to report identification and prevalence of collected tick species. During the current investigation, 16 species of ticks belonging to 3 genera were identified: <i>Hyalomma</i> (<i>Hy</i>.) <i>anatolicum, Hy. excavatum, Hy. dromedarii, Hy. impeltatum, Hy. marginatum, Hy. impressum, Hy. scupense, Hy. rufipes, Hy. detritum, Hy. truncatum, Rhiphicephalus</i> (<i>Rh</i>.) <i>sanguineus, Rh. turanicus, Rh. annulatus, Rh. parvas, Ixodes</i> (<i>Ix</i>.) <i>pilosus</i> and <i>I. ricinus. Hyalomma</i> ticks were most prevalent (85%) followed by <i>Rhipicephalus</i> (10%) and <i>Ixodes</i> (4%) on enrolled animals. Tick prevalence varied between sampling sites (P = 0.007). Tick infestation was significantly higher (P &lt; 0.001) in cattle (70%) than buffaloes (30%). Udder was the most preferred site of tick infestation in enrolled animals (P &lt; 0.05) as compared to other predilection sites.
DOI: 10.6084/m9.figshare.12421592
title: Additional file 1 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 1: Dataset S1. Summary of RNA-seq libraries of pepper samples infected with P. capsici.
DOI: 10.6084/m9.figshare.12421592.v1
title: Additional file 1 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 1: Dataset S1. Summary of RNA-seq libraries of pepper samples infected with P. capsici.
DOI: 10.6084/m9.figshare.12421607
title: Additional file 3 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 3 Dataset S2. The characterization of CaWRKY family members.
DOI: 10.6084/m9.figshare.12421607.v1
title: Additional file 3 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 3 Dataset S2. The characterization of CaWRKY family members.
DOI: 10.6084/m9.figshare.12421619
title: Additional file 5 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 5: Dataset S4. The classification of WRKY family members in pepper’s response to P. capsici infection.
DOI: 10.6084/m9.figshare.12421619.v1
title: Additional file 5 of The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection

description: Additional file 5: Dataset S4. The classification of WRKY family members in pepper’s response to P. capsici infection.
DOI: 10.5281/zenodo.10658777
title: Input files used for the tutorials of the calorine package

description: This record contains input files that are used in the notebooks and examples included in the documentation of the calorine package.

These files have been compiled from several different sources as referenced in the tables below.

NEP models




File
Source


nep-PbTe.txt
https://zenodo.org/records/10108287


nep-CsPbI3-SCAN.txt
https://zenodo.org/records/8014365/files/nep-CsPbCl3-SCAN.txt


nep-graphite-CX.txt
https://zenodo.org/records/7811021/files/nep-C-CX.txt


nep-dipole-PTAF.txt
https://zenodo.org/records/10255268




Structures




File
Source


CsPbI3-cubic-Pm-3m.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-cubic-Pm-3m.xyz


CsPbI3-delta-Pnma.xyz
https://zenodo.org/records/8014365/files/CsPbCl3-SCAN-delta-Pnma.xyz


CsPbI3-orthorhombic-Pnma.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-orthorhombic-Pnma.xyz


CsPbI3-tetragonal-I4mcm.xyz
https://zenodo.org/records/8014365/files/CsPbCl3-SCAN-tetragonal-I4mcm.xyz


CsPbI3-tetragonal-P4mbm.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-tetragonal-P4mbm.xyz


graphite-prim.xyz
n/a


PTAF-monomer.xyz
n/a
DOI: 10.5281/zenodo.10658778
title: Input files used for the tutorials of the calorine package

description: This record contains input files that are used in the notebooks and examples included in the documentation of the calorine package.

These files have been compiled from several different sources as referenced in the tables below.

NEP models




File
Source


nep-PbTe.txt
https://zenodo.org/records/10108287


nep-CsPbI3-SCAN.txt
https://zenodo.org/records/8014365/files/nep-CsPbCl3-SCAN.txt


nep-graphite-CX.txt
https://zenodo.org/records/7811021/files/nep-C-CX.txt


nep-dipole-PTAF.txt
https://zenodo.org/records/10255268




Structures




File
Source


CsPbI3-cubic-Pm-3m.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-cubic-Pm-3m.xyz


CsPbI3-delta-Pnma.xyz
https://zenodo.org/records/8014365/files/CsPbCl3-SCAN-delta-Pnma.xyz


CsPbI3-orthorhombic-Pnma.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-orthorhombic-Pnma.xyz


CsPbI3-tetragonal-I4mcm.xyz
https://zenodo.org/records/8014365/files/CsPbCl3-SCAN-tetragonal-I4mcm.xyz


CsPbI3-tetragonal-P4mbm.xyz
https://zenodo.org/records/8014365/files/CsPbBr3-SCAN-tetragonal-P4mbm.xyz


graphite-prim.xyz
n/a


PTAF-monomer.xyz
n/a
DOI: 10.6084/m9.figshare.12421415
title: Additional file 1 of Genome-wide analysis of DNA methylation identifies S100A13 as an epigenetic biomarker in individuals with chronic (≥ 30 years) type 2 diabetes without diabetic retinopathy

description: Additional file 1:. Supplement 1.
DOI: 10.6084/m9.figshare.12421415.v1
title: Additional file 1 of Genome-wide analysis of DNA methylation identifies S100A13 as an epigenetic biomarker in individuals with chronic (≥ 30 years) type 2 diabetes without diabetic retinopathy

description: Additional file 1:. Supplement 1.
DOI: 10.6084/m9.figshare.12421682
title: Additional file 2 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 2: Table S1. Raw and log2 value of the normalized intensity of each sample in the control group and the M. vaccae group.
DOI: 10.6084/m9.figshare.12421682.v1
title: Additional file 2 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 2: Table S1. Raw and log2 value of the normalized intensity of each sample in the control group and the M. vaccae group.
DOI: 10.6084/m9.figshare.12421421
title: Additional file 2 of Genome-wide analysis of DNA methylation identifies S100A13 as an epigenetic biomarker in individuals with chronic (≥ 30 years) type 2 diabetes without diabetic retinopathy

description: Additional file 2:. Supplement 2.
DOI: 10.6084/m9.figshare.12421421.v1
title: Additional file 2 of Genome-wide analysis of DNA methylation identifies S100A13 as an epigenetic biomarker in individuals with chronic (≥ 30 years) type 2 diabetes without diabetic retinopathy

description: Additional file 2:. Supplement 2.
DOI: 10.6084/m9.figshare.12421685
title: Additional file 3 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 3: Table S2. Detail information of 2326 upregulated genes and 2221 downregulated genes.
DOI: 10.6084/m9.figshare.12421691
title: Additional file 4 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 4: Table S3. GO analysis for upregulated DE genes in control and M. vaccae groups in terms of biological process (BP sheet), cellular component (CC sheet), and molecular function (MF sheet).
DOI: 10.6084/m9.figshare.12421691.v1
title: Additional file 4 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 4: Table S3. GO analysis for upregulated DE genes in control and M. vaccae groups in terms of biological process (BP sheet), cellular component (CC sheet), and molecular function (MF sheet).
DOI: 10.6084/m9.figshare.9275963
title: Effect of Simulated Geomagnetic Activity on Myocardial Ischemia/Reperfusion Injury in Rats

description: Abstract Objective: To study the response of myocardial ischemia/reperfusion injury (MI/RI) in rats to simulated geomagnetic activity. Methods: In a simulated strong geomagnetic outbreak, the MI/RI rat models were radiated, and their area of myocardial infarction, hemodynamic parameters, creatine kinase (CK), lactate dehydrogenase (LDH), melatonin, and troponin I values were measured after a 24-hour intervention. Results: Our analysis indicates that the concentrations of troponin I in the geomagnetic shielding+operation group were lower than in the radiation+operation group (P&lt;0.05), the concentrations of melatonin in the shielding+operation group and normal+operation group were higher than in the radiation + operation group (P&lt;0.01), and the concentrations of CK in the shielding + operation group were lower than in the radiation + operation group and normal + operation group (P&lt;0.05). Left ventricular developed pressure (LVDP) and ± dP/dtmax in the radiation+operation group were lower than in the shielding + operation group and normal+operation group (P&lt;0.01). Left ventricular end-diastolic pressure (LEVDP) in the shielding + operation group was higher than in the normal + operation group (P&lt;0.05). There was no significant difference in area of myocardial infarction and LDH between the shielding + operation group and the radiation + operation group. Conclusion: Our data suggest that geomagnetic activity is important in regulating myocardial reperfusion injury. The geomagnetic shielding has a protective effect on myocardial injury, and the geomagnetic radiation is a risk factor for aggravating the cardiovascular and cerebrovascular diseases.
DOI: 10.6084/m9.figshare.9275963.v1
title: Effect of Simulated Geomagnetic Activity on Myocardial Ischemia/Reperfusion Injury in Rats

description: Abstract Objective: To study the response of myocardial ischemia/reperfusion injury (MI/RI) in rats to simulated geomagnetic activity. Methods: In a simulated strong geomagnetic outbreak, the MI/RI rat models were radiated, and their area of myocardial infarction, hemodynamic parameters, creatine kinase (CK), lactate dehydrogenase (LDH), melatonin, and troponin I values were measured after a 24-hour intervention. Results: Our analysis indicates that the concentrations of troponin I in the geomagnetic shielding+operation group were lower than in the radiation+operation group (P&lt;0.05), the concentrations of melatonin in the shielding+operation group and normal+operation group were higher than in the radiation + operation group (P&lt;0.01), and the concentrations of CK in the shielding + operation group were lower than in the radiation + operation group and normal + operation group (P&lt;0.05). Left ventricular developed pressure (LVDP) and ± dP/dtmax in the radiation+operation group were lower than in the shielding + operation group and normal+operation group (P&lt;0.01). Left ventricular end-diastolic pressure (LEVDP) in the shielding + operation group was higher than in the normal + operation group (P&lt;0.05). There was no significant difference in area of myocardial infarction and LDH between the shielding + operation group and the radiation + operation group. Conclusion: Our data suggest that geomagnetic activity is important in regulating myocardial reperfusion injury. The geomagnetic shielding has a protective effect on myocardial injury, and the geomagnetic radiation is a risk factor for aggravating the cardiovascular and cerebrovascular diseases.
DOI: 10.6084/m9.figshare.12421700
title: Additional file 5 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 5: Table S4. GO analysis for downregulated DE genes in control and M. vaccae groups in terms of biological process (BP sheet), cellular component (CC sheet), and molecular function (MF sheet).
DOI: 10.6084/m9.figshare.12421700.v1
title: Additional file 5 of Effects of Mycobacterium vaccae vaccine in a mouse model of tuberculosis: protective action and differentially expressed genes

description: Additional file 5: Table S4. GO analysis for downregulated DE genes in control and M. vaccae groups in terms of biological process (BP sheet), cellular component (CC sheet), and molecular function (MF sheet).
DOI: 10.6084/m9.figshare.9275978
title: Effects of varying levels of dietary protein and net energy on growth performance, nitrogen balance and faecal characteristics of growing-finishing pigs

description: ABSTRACT This experiment was conducted to evaluate the effects of dietary protein and net energy (NE) levels on growth performance, nutrient digestibility, nitrogen metabolism, and faecal microbiota of growing-finishing pigs. Eighteen crossed barrows were randomly allocated into one of three dietary treatments: high protein + high NE diet, low protein + high NE diet, and low protein + low NE diet. The whole experiment lasted 90 days and was divided into three phases (phase I: 25-50 kg; phase II: 50-75 kg; phase III: 75-105 kg). All pigs were individually housed in a metabolism cage and subjected to four-day total faeces and urine collection period at the end of each phase. There was no significant difference in growth performance, nutrient digestibility, serum total protein, and albumin concentrations of pigs among the dietary treatments. Compared with the high protein + high NE diet, pigs fed low protein + high NE and low protein + low NE diets had lower N intake, urine N, and total N excretion in each phase. At the end of the experiment, pigs fed the low protein + high NE and low protein + low NE diets had lower blood urea nitrogen, serum NH3-N concentrations, faecal pH value, faecal NH3-N concentration, and faecal Escherichia coli count than those fed the high protein + high NE diet. However, there was no significant difference in all of the above indexes between low protein + high NE and low protein + low NE diets. Decreasing the dietary protein content by 3.5 percentage units has no adverse effects on growth performance and nutrient digestibility of pigs while significantly reduces N excretion and faecal Escherichia coli count. Moreover, further decreasing dietary NE level in the low-protein diet by 0.35-0.5 MJ/kg does not affect growth performance, nutrient digestibility, N excretion, blood profiles, and faecal Escherichia coli count of pigs.