cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11188613
title: Model output derived from SWE pacemaker experiments using MIROC6-AGCM

description: This data set is model output derived from numerical simulations using MIROC6-AGCM (Onuma et al., 2024, Journal of Climate).

The contents are as below.

- python: Python scripts for the visualization- figure: PNG files created by the Python scripts- data: model output data for the Python scripts. The data directory includes the below contents.-- LMIP: Output data simulated using MATSIRO6 with GSWP3 reanalysis data (LMIP experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from LMIP experiment (netCDF and csv files, respectively).

-- AMIP: Output data simulated using MIROC6 with prescribed sea surface temperature and sea ice concentration (AMIP experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from AMIP ensemble experiments (netCDF and csv files, respectively).

-- AMIP+SWE: Output data simulated using MIROC6 with prescribed sea surface temperature, sea ice concentration and snow water equivalent (AMIP+SWE experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from AMIP+SWE ensemble experiments (netCDF and csv files, respectively). Difference in a surface energy budget between AMIP+SWE and AMIP is also included (feedback_*.csv).

-- AS-A: Statistical results analyzed from output data in AMIP+SWE and AMIP experiments (csv files). R_a (R_b) means the correlation coefficients of the outputs in AMIP+SWE (AMIP) for inter-annual change from 1901 to 2010 with those in LMIP. P means p-value.  RMSD_a (RMSD_b) means the root mean square difference of the outputs in AMIP+SWE (AMIP) for inter-annual change from 1901 to 2010 with those in LMIP. Tr_a (Tr_b, Tr_ref) means the inter-annual trends from 1901 to 2010 in AMIP+SWE (AMIP, LMIP).-- else: CMIP6 amip multi-models output, GlobSnow3 observation data and mask files for the regional averages. CMIP6 and GlobSnow3 data have been processed for analysis.

*Regarding AMIP and AMIP+SWE data, the uploaded data are limited to ensemble mean data and run01 data due to data size that can be uploaded. If you need model outputs from run02 to run10, please contact Yukihiko Onuma (yonuma613@gmail.com). 

The abbreviations of the output files are below.alb: land surface albedoclt: total cloud cover fractionebflx: soil evaporationgdt: surface air temperature (GSWP3)hfls: latent heat fluxhfss: sensible heat fluxmrsos: surface soil moisturepr: total precipitationrlds: downward longwave radiation at the surfacerldscs: clear-sky downward longwave radiation at the surfacerls: net longwave radiation at the surfacerlus: upward longwave radiation at the surfacersds: downward shortwave radiation at the surfacersdscs: clear-sky downward shortwave radiation at the surfacerss: net shortwave radiation at the surfacersus: upward shortwave radiation at the surfacesnc: snow cover fractionsnow: snow water equivalentT2: surface air temperaturetsl_z0: surface soil temperature (top 0.05 m)tsl_z1: sub-surface soil temperature (top 0.05-0.25 m)
DOI: 10.5281/zenodo.8255459
title: Model output derived from SWE pacemaker experiments using MIROC6-AGCM

description: This data set is model output derived from numerical simulations using MIROC6-AGCM (Onuma et al., 2024, Journal of Climate).

The contents are as below.

- python: Python scripts for the visualization- figure: PNG files created by the Python scripts- data: model output data for the Python scripts. The data directory includes the below contents.-- LMIP: Output data simulated using MATSIRO6 with GSWP3 reanalysis data (LMIP experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from LMIP experiment (netCDF and csv files, respectively).

-- AMIP: Output data simulated using MIROC6 with prescribed sea surface temperature and sea ice concentration (AMIP experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from AMIP ensemble experiments (netCDF and csv files, respectively).

-- AMIP+SWE: Output data simulated using MIROC6 with prescribed sea surface temperature, sea ice concentration and snow water equivalent (AMIP+SWE experiment) are included. Monthly time-series data and regional averages for 1901-2010 derived from AMIP+SWE ensemble experiments (netCDF and csv files, respectively). Difference in a surface energy budget between AMIP+SWE and AMIP is also included (feedback_*.csv).

-- AS-A: Statistical results analyzed from output data in AMIP+SWE and AMIP experiments (csv files). R_a (R_b) means the correlation coefficients of the outputs in AMIP+SWE (AMIP) for inter-annual change from 1901 to 2010 with those in LMIP. P means p-value.  RMSD_a (RMSD_b) means the root mean square difference of the outputs in AMIP+SWE (AMIP) for inter-annual change from 1901 to 2010 with those in LMIP. Tr_a (Tr_b, Tr_ref) means the inter-annual trends from 1901 to 2010 in AMIP+SWE (AMIP, LMIP).-- else: CMIP6 amip multi-models output, GlobSnow3 observation data and mask files for the regional averages. CMIP6 and GlobSnow3 data have been processed for analysis.

*Regarding AMIP and AMIP+SWE data, the uploaded data are limited to ensemble mean data and run01 data due to data size that can be uploaded. If you need model outputs from run02 to run10, please contact Yukihiko Onuma (yonuma613@gmail.com). 

The abbreviations of the output files are below.alb: land surface albedoclt: total cloud cover fractionebflx: soil evaporationgdt: surface air temperature (GSWP3)hfls: latent heat fluxhfss: sensible heat fluxmrsos: surface soil moisturepr: total precipitationrlds: downward longwave radiation at the surfacerldscs: clear-sky downward longwave radiation at the surfacerls: net longwave radiation at the surfacerlus: upward longwave radiation at the surfacersds: downward shortwave radiation at the surfacersdscs: clear-sky downward shortwave radiation at the surfacerss: net shortwave radiation at the surfacersus: upward shortwave radiation at the surfacesnc: snow cover fractionsnow: snow water equivalentT2: surface air temperaturetsl_z0: surface soil temperature (top 0.05 m)tsl_z1: sub-surface soil temperature (top 0.05-0.25 m)
DOI: 10.5061/dryad.rn8pk0p83
title: Data for: Early-life behavior predicts first-year survival in a long-distance avian migrant

description: Early-life conditions have critical, long-lasting effects on the fate of
 individuals, yet early-life activity has rarely been linked to subsequent
 survival of animals in the wild. Using high-resolution GPS and
 body-acceleration data of 93 juvenile white storks (Ciconia ciconia), we
 examined the links between behavior during both pre-fledging and
 post-fledging (fledging-to-migration) periods and subsequent first year
 survival. Juvenile daily activity (based on overall dynamic body
 acceleration) showed repeatable between-individual variation, the
 juveniles’ pre and post-fledging activity levels were correlated, and both
 were positively associated with subsequent survival. Daily activity
 increased gradually throughout the post-fledging period, and the
 relationship between post-fledging activity and survival was stronger in
 individuals who increased their daily activity level faster (an
 interaction effect). We suggest that high activity profiles signified
 individuals with increased pre-migratory experience, higher individual
 quality and perhaps more proactive personality, which could underlie their
 superior survival rates. The duration of individuals’
 fledging-to-migration periods had a hump-shaped relationship with
 survival: higher survival was associated with intermediate rather than
 short or long durations. Short durations reflect lower pre-migratory
 experience, whereas very long ones were associated with slower increases
 in daily activity level which possibly reflects slow behavioral
 development. In accordance with previous studies, heavier nestlings and
 those that hatched and migrated earlier had increased survival. Using
 extensive tracking data, our study exposed new links between early-life
 attributes and survival, suggesting that early activity profiles in
 migrating birds can explain variation in first-year survival.
description: GPS-body acceleration data from tramsitteres that were fitted to
 white storks as nestlings and cover the pre-/post-fledging periods. Data
 were proccessed in Matlab R 2016.
DOI: 10.5061/dryad.tx95x69wc
title: Improved route to a diphenoxide-based precursor for CVD of parylene AF-4

description: In this work, we present an easy synthesis of a alternative precursor for
 CVD of parylene AF-4 to the widely used standard,
 Octafluoro[2.2]paracyclophane. The standard precursor suffers from
 uncertainties in its supply chain and its synthesis is of low yield. A
 comparison between different reaction parameters and solvents are being
 discussed by means of thermal, laboratory scale and microwave assisted
 reactions and qNMR studies.
description: There is GC-MS data available, as well as infrared and various
 NMR spectra.
description: Usage notes are included in the .zip-file. File name:
 "Interpretation of spectroscopic data"
DOI: 10.5061/dryad.8931zcrpc
title: The island biogeography of the eBird citizen-science program

description: Aim: Island biotas face an array of unique challenges under global change.
 Monitoring and research efforts, however, have been hindered by the large
 number of islands, their broad distribution and geographic isolation.
 Global citizen-science initiatives have the potential to address these
 deficiencies. Here, we determine how the eBird citizen-science program is
 currently sampling island bird assemblages annually and how these patterns
 are developing over time. Location: Global. Taxa: Birds. Methods: We
 compiled occurrence information of non-marine bird species across the
 world’s islands (n = 21,813) over an 18-year period (2002-2019) from
 eBird. We estimated annual survey completeness and species richness across
 islands, which we examined in relation to six geographical and four
 climatic features. Results: eBird contained bird occurrence information
 for ca. 20% of the world’s islands (n = 4,205) with ca. 8% classified as
 well surveyed annually (n =1,644). eBird participants tended to survey
 larger islands that were more distant from the mainland. These islands had
 lower proximity to other islands and contained a broader range of
 elevations. Temperature, precipitation, and temperature seasonality were
 at intermediate levels. Precipitation seasonality was at low and
 intermediate levels. Islands located between 10-60° N latitude and 30-40°
 S latitude were overrepresented, and islands located between 60-130° W
 longitude were underrepresented. From 2002 to 2019, the number of islands
 surveyed annually increased by ca. 96.3 islands/year. During this period,
 island size decreased, distance from mainland did not change, proximity to
 other islands increased, and elevation range decreased. Main conclusions:
 The eBird program tends to survey larger islands containing intermediate
 climates that are more isolated from the mainland and other islands. These
 findings provide a framework to support the rigorous application of eBird
 data in avian island biogeography. Our findings also emphasize citizen
 science as a resource to support ecological research, conservation, and
 monitoring efforts across remote regions of the globe.
description: The bird occurrence data in this dataset was acquired from eBird
 (ebird.org). 
description: The zip file contains 6,573 RData files organized by month, day,
 and year. Each file contains eBird checklists of non-pelagic bird species
 that were observed on that date on the world's islands. A total of
 4,205 islands are represented in the dataset. Each file contains the the
 scientific name of the bird species (SCI_NAME), the unique submission ID
 for the eBird checklist (SUB_ID), the longitude and latitude of the
 submission, and the ISLAND_ID where the observation occurred.  ISLAND_ID
 corresponds to OBJECTID in the Sayre et al. (2018) global islands database
 (doi:10.1080/1755876X.2018.1529714).
DOI: 10.15468/dl.j2hp4h
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cicer pungens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002633-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.63xsj3v16
title: Dire wolves were the last of an ancient New World canid lineage

description: Dire wolves are considered one of the most common and widespread large
 carnivores in Pleistocene America, yet relatively little is known
 about their evolution or extinction. To reconstruct the evolutionary
 history of dire wolves, we sequenced five genomes from sub-fossil bones
 dating from 13,000 to over 50,000 years ago. Our results indicate that
 though they were similar morphologically to the extant gray wolf, dire
 wolves were a highly divergent lineage that split from living canids ~5.7
 million years ago. In contrast to numerous examples of hybridization
 across Canidae, there is no evidence for gene flow between dire
 wolves and either North American gray wolves or coyotes. This suggests
 that dire wolves evolved in isolation from the Pleistocene ancestors of
 these species. Our results also support an early New World origin of dire
 wolves, while the ancestors of gray wolves, coyotes, and dholes evolved in
 Eurasia and only colonized North America relatively recently.
description: 2D Landmarks recorded with tpsDig from photographs taken using a
 Nikon DSLR with 60mm fixed focal length lens. Dental data was digitised by
 Ardern Hulme-Beaman; mandibular data was digitised by Carly Ameen. Each
 csv is in a format with specimens by row and data by column. The first
 column includes specimen IDs, the second column is the species and the
 third column is the centroid size; the remaining columns are the x and y
 coordinates of the individual landmarks for each specimens in the format
 x1, y1, x2, y2, x3 … etc. For the 2D molar shape data
 (Canid_M1_SIdata.csv) there are 51 landmarks and therefore an additional
 102 columns. For the 2D mandibular shape data (Canid_Mand_SIdata.csv)
 there are 15 landmarks and therefore in the csv files there are an
 additional 30 columns.
DOI: 10.5061/dryad.n2z34tmvc
title: Data from: Female mating experience and genetic background independently influence male mating success in fruit flies

description: When the reproductive interests of males and females conflict, males can
 evolve traits that are harmful to females, and females can coevolve traits
 to resist this harm. In the fruit fly, Drosophila melanogaster, there is
 genetic variation in female resistance traits, which can affect the pre-
 and post-mating success of males that try to mate with them. However, it
 is not clear to what extent the expression of these phenotypes can be
 modified by environmental factors such as sociosexual experience. Here, we
 tested how the genetic background of a female and her previous mating
 experience interact to affect the mating success of focal males. In the
 experience phase, we placed females from 28 distinct genetic backgrounds
 individually either with a single male (low conflict) or with three males
 (high conflict) for 48 hours. In the subsequent test phase, we measured
 the mating and post-mating fertilization success of focal males paired
 individually with each female. We found that focal males paired with
 females from the high conflict treatment were less successful at mating,
 took longer to mate when they were successful, and had a lower proportion
 of paternity share. Furthermore, we identified significant female genetic
 variation associated with male mating success. These results indicate that
 female experience, along with intrinsic genetic factors, can independently
 influence different fitness components of her subsequent mates and has
 implications for our understanding of plastic female mating strategies and
 the evolution of sexually antagonistic traits in males and females.
DOI: 10.5061/dryad.0zpc866wc
title: Raw data for Leigh et al 2020: Satyrization in Drosophila fruiflies

description: The satyr of Greek mythology was half-man, half-goat, with an animal
 persona signifying immoderate sexual appetites. In biology, satyrization
 is the disruption of reproduction in matings between closely-related
 species. Interestingly, its effects are often reciprocally asymmetric,
 manifesting more strongly in one direction of heterospecific mating than
 the other. Heterospecific matings are well known to result in female
 fitness costs due to the production of sterile or inviable hybrid
 offspring and can also occur due to reduced female sexual receptivity,
 lowering the likelihood of any subsequent conspecific matings. Here we
 investigated the costs and mechanisms of satyrization in the Drosophila
 melanogaster species subgroup of fruitflies. The results showed that D.
 simulans females experienced higher fitness costs from a loss of remating
 opportunites due to significantly reduced post-mating sexual receptivity,
 than D. melanogaster females, as a result of reciprocal heterospecific
 matings. Reciprocal tests of the effects of male reproductive accessory
 gland protein (Acp) injections on female receptivity in pairwise
 comparisons between D. melanogaster and five other species within the
 melanogaster species subgroup revealed significant post-mating receptivity
 asymmetries. This was due to variation in the effects of heterospecific
 Acps within species with which D. melanogaster can mate
 heterospecifically, and significant but non-asymmetric Acp effects in
 species with which it cannot. We conclude that asymmetric satyrization due
 to post-mating effects of Acps may be common among diverging and
 hybridising species. The findings are of interest in understanding the
 evolution of reproductive isolation and species divergence.
description: Data were collected from the empirical experiments described in
 the above MS. Given in this dataset are all the raw data feeding into the
 analyses used.
description: Readme information has been incorporated into the relevant tabs
 in the raw data file. We believe that the datafile is readable by a
 general reader.
DOI: 10.5061/dryad.hx3ffbgcn
title: Avian survival on islands

description: Island species are often predictably different from their mainland
 counterparts. Milder climates and reduced predation risk on islands have
 been involved to explain shifts in body size and a suite of life history
 traits such as clutch size and offspring growth rate. Despite the key role
 of adult survival on risk taking and reproduction, the prediction that
 living on islands increases adult survival has yet to be tested
 systematically. I gathered data on adult annual apparent survival from
 island and mainland year-round resident species of birds from around the
 world. With this large dataset (708 species), I found that species of
 birds living on islands showed higher apparent survival than their
 mainland counterparts in the two hemispheres and at all latitudes
 controlling for several known predictors of adult survival including body
 size, clutch size, and breeding system. These results shed light on the
 ecological factors that influence survival on islands and extend the life
 history island syndrome to adult survival.
description: I searched the literature for avian studies that reported
 survival rates. I focused on year-round resident species, as most island
 species are not migratory. I first consulted earlier extensive reviews of
 survival rates in birds [15, 18, 20-22]. I complemented this set by
 performing online database searches using key words such as ‘adult’,
 ‘survival’, ‘annual’ and ‘birds’. Studies were included in the analysis if
 they met the following criteria: (1) the study provided estimates of adult
 annual survival for year-round resident species, (2) survival was not
 based on age ratios or DNA fingerprinting, (3) the study population was
 not subject to extensive harvest or artificial conditions that can
 influence survival such as predator control, (4), the study did not
 include urban populations or recently introduced species. Most studies
 reported survival estimates for two sexes combined but if this was not the
 case I took the arithmetic mean of the two sexes.
DOI: 10.5061/dryad.18931zcvs
title: Social network position predicts male mating success in a small passerine

description: Individuals differ in the quantity and quality of associations with
 conspecifics. The resulting variation in the positions that individuals
 occupy within their social environment can affect several aspects of life
 history, including reproductive behavior. While research
 increasingly shows how social factors can predict dyadic mating patterns
 (i.e. who will breed with whom), much less is known about how an
 individual’s social position affects it’s overall likelihood to acquire
 mating partner(s). We studied social networks of socially monogamous blue
 tits (Cyanistes caeruleus) to investigate whether the number and
 strength of connections to opposite-sex conspecifics, the ratio between
 same- and opposite-sex connections, and the tendency to move between
 social groups in the months prior to breeding affects individuals’ success
 in acquiring 1) a breeding partner and 2) an extra-pair partner. After
 controlling for differences in spatial location, we show that males
 without previous local breeding experience that moved more often between
 social groups were more likely to acquire a breeding partner. Moreover,
 adult males that associated with more females were more likely to sire
 extra-pair young. The number of female associates also predicted the
 proportion of familiar female breeding neighbors, suggesting that
 familiarity among neighbors may facilitate opportunities for extra-pair
 matings. In females, none of the social network metrics significantly
 predicted the likelihood of acquiring a breeding or extra-pair partner.
 Our study suggests that the positioning of males within their social
 environment prior to breeding can translate into future mating success,
 adding an important new dimension to studies of (extra-pair) mating
 behavior.