cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2dks6z
title: CCDC 2221621: Experimental Crystal Structure Determination

description: Related Article: Jun’an Lai, Daofu Wu, Peng He, Kang An, Yijia Wang, Peng Feng, WeiWei Chen, Zixian Wang, Linfeng Guo, Xiaosheng Tang|2024|J.Alloys Compd.|971|172788|doi:10.1016/j.jallcom.2023.172788
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f23pb
title: CCDC 2236361: Experimental Crystal Structure Determination

description: Related Article: Saleh Alsaee|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3k8d
title: CCDC 2237743: Experimental Crystal Structure Determination

description: Related Article: Zhi-Qiang Zhu, Jia-Yu Hu, Zong-Bo Xie, Zhang-Gao Le|2023|Chem.Commun.|60|106|doi:10.1039/D3CC04107G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddmr6
title: CCDC 2216678: Experimental Crystal Structure Determination

description: Related Article: Friedericke S. Menke, Barbara Wicher, Lars Allmendinger, Victor Maurizot, Ivan Huc|2023|Chemical Science|14|3742|doi:10.1039/D3SC00267E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fpplf
title: CCDC 2255175: Experimental Crystal Structure Determination

description: Related Article: Hao Wang, Bolin Qiao, Jide Zhu, Huosheng Guo, Zhen Zhang, Kai Yang, Shi-Jun Li, Yu Lan, Qiuling Song|2024|Chem (Cell Press)|10|317|doi:10.1016/j.chempr.2023.09.017
description: Related Article: W H|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fppmg
title: CCDC 2255176: Experimental Crystal Structure Determination

description: Related Article: Hao Wang, Bolin Qiao, Jide Zhu, Huosheng Guo, Zhen Zhang, Kai Yang, Shi-Jun Li, Yu Lan, Qiuling Song|2024|Chem (Cell Press)|10|317|doi:10.1016/j.chempr.2023.09.017
description: Related Article: W H|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g77hg
title: CCDC 2271075: Experimental Crystal Structure Determination

description: Related Article: Dmitry L. Lipilin, Mikhail O. Zubkov, Mikhail D. Kosobokov, Alexander D. Dilman|2024|Chemical Science|15|644|doi:10.1039/D3SC05513B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggjm3
title: CCDC 2278085: Experimental Crystal Structure Determination

description: Related Article: Pratiksha P. Gawas, Buthanapalli Ramakrishna, Rajesh Pamanji, Joseph Selvin, Venkatramaiah Nutalapati|2024|Mat.Advs.|5|336|doi:10.1039/D3MA00559C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkx87
title: CCDC 2281329: Experimental Crystal Structure Determination

description: Related Article: Anna Schannong Manvell, Rouven Pfleger, Niels Andreas Bonde, Matteo Briganti, Carlo Andrea Mattei, Theis Brock Nannestad, Høgni Weihe, Annie K. Powell, Jacques Ollivier, Jesper Bendix, Mauro Perfetti|2024|Chemical Science|15|113|doi:10.1039/D3SC03928E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7372124
title: Balochi Language to English Translation Dataset
DOI: 10.34943/4c4d638b-d110-4b71-ba77-2667c5ee38da
title: Sandspit Oceanographic Radar System Deployed 2019-04-17

description: The CODAR SeaSonde 5MHz SAND was deployed on 2019-04-17 at Sandspit. The Sandspit CODAR station contributes to an array of CODARs to monitor surface currents in the Hecate. This device is a Oceanographic Radar System. Oceanographic radars measure the ocean surface currents and waves in near real-time, by timing reflected radio waves, and contribute to an accurate prediction of severe weather conditions. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.24955836.v1
title: DsPCBSD+

description: This work categorized PCB surface defects into 9 distinct categories based on factors such as their causes, locations, and morphologies and developed a dataset of PCB surface defect (DsPCBSD+). In DsPCBSD+, a total of 20,276 defects were annotated manually by bounding boxes on the 10,259 images. This openly accessible dataset is aimed accelerating and promoting further researches and advancements in the field of DL-based detection of PCB surface defect.
DOI: 10.6073/pasta/89139a7d28cef6b4dce8b4ff29b39d0c
title: Underwater photosynthetically active radiation (PAR) vertical profiles collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2023, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, lakes are monitored for photosynthetic active radiation (PAR) levels. This data set exemplifies the vertical profile of underwater PAR profiles in perennial ice covered lakes and ambient PAR measured at the air-ice interface. Profile data can be used to calculate extinction coefficients for the water column and ice layer.
DOI: 10.6073/pasta/dcab665da20b8e75a57506b19f90262a
title: Hubbard Brook Experimental Forest: 1 meter LiDAR-derived and Hydro-enforced Digital Elevation Models, 2012

description: This data package contains a 1 m LiDAR-derived digital elevation model
 (DEM) and a 1 m hydro-enforced DEM across Hubbard Brook EF. The LiDAR
 was collected during leaf-off and snow-free conditions by Photo
 Science, Inc. in April 2012 for the White Mountain National Forest
 (WMNF).

 
 These data were gathered as part of the Hubbard Brook Ecosystem Study
 (HBES). The HBES is a collaborative effort at the Hubbard Brook
 Experimental Forest, which is operated and maintained by the USDA
 Forest Service, Northern Research Station.
DOI: 10.3886/e113617v1-144881
title: Replication data for: Racial Discrimination in Grading: Evidence from Brazil

description: We investigate whether racial discrimination in the form of biased
assessment of students is prevalent within Brazilian schools.
Evidence is drawn from unique administrative data pertaining to
eighth-grade students and educators. Holding constant performance
in blindly-scored tests of proficiency and behavioral traits we find
that blacks have lower teacher-assigned math grades than their white
classmates. Heterogeneity in differentials provides evidence both of
robustness with respect to omission biases and of compatibility with
predictions from models of statistical discrimination. (JEL I21, I24,
J15, O15)
DOI: 10.6084/m9.figshare.24272167
title: The colonization of an irradiated environment: the case of microbial biofilm in a nuclear reactor

description: The investigation of the microbial community change in the biofilm, growing on the walls of a containment tank of TRIGA nuclear reactor revealed a thriving community in an oligotrophic and heavy-metal-laden environment, periodically exposed to high pulses of ionizing radiation (IR). We observed a vertical IR resistance/tolerance stratification of microbial genera, with higher resistance and less diversity closer to the reactor core. One of the isolated <i>Bacillus</i> strains survived 15 kGy of combined gamma and proton radiation, which was surprising. It appears that there is a succession of genera that colonizes or re-colonizes new or IR-sterilized surfaces, led by <i>Bacilli</i> and/or <i>Actinobacteria</i>, upon which a photoautotrophic and diazotrophic community is established within a fortnight. The temporal progression of the biofilm community was evaluated also as a proxy for microbial response to radiological contamination events. This indicated there is a need for better dose-response models that could describe microbial response to contamination events. Overall, TRIGA nuclear reactor offers a unique insight into IR microbiology and provides useful means to study relevant microbial dose-thresholds during and after radiological contamination.
DOI: 10.6084/m9.figshare.24000091
title: A pooled analysis of nine studies in one institution to assess effects of whole heart irradiation in rat models

description: Over the years, animal models of local heart irradiation have provided insight into mechanisms of and treatments for radiation-induced heart disease in human populations. However, it is not completely clear which manifestations of radiation injury are most commonly seen after whole heart irradiation, and whether certain biological factors impact experimental results. Combining 9 homogeneous studies in rat models of whole heart irradiation from one laboratory, we sought to identify experimental and/or biological factors that impact heart outcomes. We evaluated the usefulness of including (1) heart rate and (2) bodyweight as covariates when analyzing biological parameters, and (3) we determined which echocardiography, histological, and immunohistochemistry parameters are most susceptible to radiation effects. Finally, (4) as an educational example, we illustrate a hypothetical sample size calculation for a study design commonly used in evaluating radiation modifiers, using the pooled estimates from the 9 rat studies only for context. The results may assist investigators in the design and analyses of pre-clinical studies of whole heart irradiation. We made use of data from 9 rat studies from our labs, 8 published elsewhere in 2008–2017, and one unpublished study. Echocardiography, histological, and immunohistochemical parameters were collected from these studies. Using mixed effects analysis of covariance models, we estimated slopes for heart rate and bodyweight and estimated the radiation effect on each of the parameters. Bodyweight was related to most echocardiography parameters, and heart rate had an effect on echocardiography parameters related to the diameter of the left ventricle. For some parameters, there was evidence that heart rate and bodyweight relationships with the parameter depended on whether the rats were irradiated. Radiation effects were found in systolic measures of echocardiography parameters related to the diameter of the left ventricle, with ejection fraction and fractional shortening, with atrial wall thickness, and with histological measures of capillary density, collagen deposition, and mast cells infiltration in the heart. Accounting for bodyweight, as well as heart rate, in analyses of echocardiography parameters should reduce variability in estimated radiation effects. Several echocardiography and histological parameters were particularly susceptible to whole heart irradiation, showing robust effects compared to sham-irradiation. Lastly, we provide an example approach for a sample size calculation that will contribute to a rigorous study design and reproducibility in experiments studying radiation modifiers.
DOI: 10.6084/m9.figshare.24272167.v2
title: The colonization of an irradiated environment: the case of microbial biofilm in a nuclear reactor

description: The investigation of the microbial community change in the biofilm, growing on the walls of a containment tank of TRIGA nuclear reactor revealed a thriving community in an oligotrophic and heavy-metal-laden environment, periodically exposed to high pulses of ionizing radiation (IR). We observed a vertical IR resistance/tolerance stratification of microbial genera, with higher resistance and less diversity closer to the reactor core. One of the isolated <i>Bacillus</i> strains survived 15 kGy of combined gamma and proton radiation, which was surprising. It appears that there is a succession of genera that colonizes or re-colonizes new or IR-sterilized surfaces, led by <i>Bacilli</i> and/or <i>Actinobacteria</i>, upon which a photoautotrophic and diazotrophic community is established within a fortnight. The temporal progression of the biofilm community was evaluated also as a proxy for microbial response to radiological contamination events. This indicated there is a need for better dose-response models that could describe microbial response to contamination events. Overall, TRIGA nuclear reactor offers a unique insight into IR microbiology and provides useful means to study relevant microbial dose-thresholds during and after radiological contamination.
DOI: 10.6084/m9.figshare.24000091.v1
title: A pooled analysis of nine studies in one institution to assess effects of whole heart irradiation in rat models

description: Over the years, animal models of local heart irradiation have provided insight into mechanisms of and treatments for radiation-induced heart disease in human populations. However, it is not completely clear which manifestations of radiation injury are most commonly seen after whole heart irradiation, and whether certain biological factors impact experimental results. Combining 9 homogeneous studies in rat models of whole heart irradiation from one laboratory, we sought to identify experimental and/or biological factors that impact heart outcomes. We evaluated the usefulness of including (1) heart rate and (2) bodyweight as covariates when analyzing biological parameters, and (3) we determined which echocardiography, histological, and immunohistochemistry parameters are most susceptible to radiation effects. Finally, (4) as an educational example, we illustrate a hypothetical sample size calculation for a study design commonly used in evaluating radiation modifiers, using the pooled estimates from the 9 rat studies only for context. The results may assist investigators in the design and analyses of pre-clinical studies of whole heart irradiation. We made use of data from 9 rat studies from our labs, 8 published elsewhere in 2008–2017, and one unpublished study. Echocardiography, histological, and immunohistochemical parameters were collected from these studies. Using mixed effects analysis of covariance models, we estimated slopes for heart rate and bodyweight and estimated the radiation effect on each of the parameters. Bodyweight was related to most echocardiography parameters, and heart rate had an effect on echocardiography parameters related to the diameter of the left ventricle. For some parameters, there was evidence that heart rate and bodyweight relationships with the parameter depended on whether the rats were irradiated. Radiation effects were found in systolic measures of echocardiography parameters related to the diameter of the left ventricle, with ejection fraction and fractional shortening, with atrial wall thickness, and with histological measures of capillary density, collagen deposition, and mast cells infiltration in the heart. Accounting for bodyweight, as well as heart rate, in analyses of echocardiography parameters should reduce variability in estimated radiation effects. Several echocardiography and histological parameters were particularly susceptible to whole heart irradiation, showing robust effects compared to sham-irradiation. Lastly, we provide an example approach for a sample size calculation that will contribute to a rigorous study design and reproducibility in experiments studying radiation modifiers.
DOI: 10.6084/m9.figshare.24101343
title: Evaluating transport conditions of conventional, widely used EDTA blood tubes for gene expression analysis in comparison to expensive, specialized PAXgene tubes in preparedness for radiological and nuclear events

description: Gene expression (GE) analysis of a radio-sensitive gene set (<i>FDXR, DDB2, WNT3, POU2AF1</i>) has been introduced in the last decade as an early and high-throughput prediction tool of later developing acute hematologic radiation syndrome (H-ARS) severity. The use of special tubes for RNA extraction from peripheral whole blood (PAXgene) represent an established standard in GE studies, although uncommonly used in clinics and not immediately available in the quantities needed in radiological/nuclear (R/N) incidents. On the other hand, EDTA blood tubes are widely utilized in clinical practice. Using blood samples from eleven healthy donors, we investigated GE changes associated with delayed processing of EDTA tubes up to 4 h at room temperature (RT) after venipuncture (simulating delays caused by daily clinical routine), followed by a subsequent transport time of 24 h at RT, 4 °C, and −20 °C. Differential gene expression (DGE) of the target genes was further examined after X-irradiation with 0 Gy and 4 Gy under optimal transport conditions. No significant changes in DGE were observed when storing EDTA whole blood samples up to 4 h at RT and subsequently kept at 4 °C for 24 h which is in line with expected DGE. However, other storage conditions, such as −20 °C or RT, decreased RNA quality and/or (significantly) caused changes in DGE exceeding the known methodological variance of the qRT-PCR. Our data indicate that the use of EDTA whole blood tubes for GE-based H-ARS severity prediction is comparable to the quality of PAXgene tubes, when processed ≤ 4 h after venipuncture and the sample is transported within 24 hours at 4 °C.
DOI: 10.6084/m9.figshare.24101343.v2
title: Evaluating transport conditions of conventional, widely used EDTA blood tubes for gene expression analysis in comparison to expensive, specialized PAXgene tubes in preparedness for radiological and nuclear events

description: Gene expression (GE) analysis of a radio-sensitive gene set (<i>FDXR, DDB2, WNT3, POU2AF1</i>) has been introduced in the last decade as an early and high-throughput prediction tool of later developing acute hematologic radiation syndrome (H-ARS) severity. The use of special tubes for RNA extraction from peripheral whole blood (PAXgene) represent an established standard in GE studies, although uncommonly used in clinics and not immediately available in the quantities needed in radiological/nuclear (R/N) incidents. On the other hand, EDTA blood tubes are widely utilized in clinical practice. Using blood samples from eleven healthy donors, we investigated GE changes associated with delayed processing of EDTA tubes up to 4 h at room temperature (RT) after venipuncture (simulating delays caused by daily clinical routine), followed by a subsequent transport time of 24 h at RT, 4 °C, and −20 °C. Differential gene expression (DGE) of the target genes was further examined after X-irradiation with 0 Gy and 4 Gy under optimal transport conditions. No significant changes in DGE were observed when storing EDTA whole blood samples up to 4 h at RT and subsequently kept at 4 °C for 24 h which is in line with expected DGE. However, other storage conditions, such as −20 °C or RT, decreased RNA quality and/or (significantly) caused changes in DGE exceeding the known methodological variance of the qRT-PCR. Our data indicate that the use of EDTA whole blood tubes for GE-based H-ARS severity prediction is comparable to the quality of PAXgene tubes, when processed ≤ 4 h after venipuncture and the sample is transported within 24 hours at 4 °C.
DOI: 10.6084/m9.figshare.24272167.v1
title: The Colonization of an Irradiated Environment: The Case of Microbial Biofilm in a Nuclear Reactor

description: Graphical abstract showing the samples taken and analyses performed.
DOI: 10.6084/m9.figshare.23912193
title: Retinal regeneration after injury induced by gamma-ray irradiation during early embryogenesis in medaka, <i>Oryzias latipes</i>

description: Zebrafish, a small fish model, exhibits a multipotent ability for retinal regeneration after damage throughout its lifetime. Compared with zebrafish, birds and mammals exhibit such a regenerative capacity only during the embryonic period, and this capacity decreases with age. In medaka, another small fish model that has also been used extensively in biological research, the retina’s inner nuclear layer (INL) failed to regenerate after injury in the hatchling at eight days postfertilization (dpf). We characterized the regenerative process of the embryonic retina when the retinal injury occurred during the early embryonic period in medaka. We employed a 10 Gy dose of gamma-ray irradiation to initiate retinal injury in medaka embryos at 3 dpf and performed histopathological analyses up to 21 dpf. One day after irradiation, numerous apoptotic neurons were observed in the INL; however, these neurons were rarely observed in the ciliary marginal zone and the photoreceptor layer. Numerous pyknotic cells were clustered in the irradiated retina until two days after irradiation. These disappeared four days after irradiation, but the abnormal bridging structures between the INL and ganglion cell layer (GCL) were present until 11 days after irradiation, and the neural layers were completely regenerated 18 days after irradiation. After gamma-ray irradiation, the spindle-like Müller glial cells in the INL became rounder but did not lose their ability to express SOX2. Irradiated retina at 3 dpf of medaka embryos could be completely regenerated at 18 days after irradiation (21 dpf), although the abnormal layer structures bridging the INL and GCL were transiently formed in the retinas of all the irradiated embryos. Four days after irradiation, embryonic medaka Müller glia were reduced in number but maintained SOX2 expression as in nonirradiated embryos. This finding contrasts with previous reports that 8 dpf medaka larvae could not fully regenerate damaged retinas because of loss of SOX2 expression.