cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19645140.v1
title: Supplementary Material for: Discrepancy between Guidelines and Clinical Practice in the Management of Cow’s Milk Allergy in Children: An Online Cross-Sectional Survey of Polish Physicians

description: The aim of this study was to assess the compliance between current guidelines on the diagnosis and management of children with cow’s milk allergy (CMA) and clinical practice by a survey of Polish physicians. An online cross-sectional survey involving a convenience series of participants was performed from January 15 to March 20, 2020. Data provided by 605 physicians (74.2% of them pediatricians working in general practice) were analyzed. Contrary to the current recommendations, only a minority of respondents (27.4%) reported performing oral food challenge (OFC) to confirm the diagnosis of CMA. Among those who reported performing OFC (<i>n</i> = 160 respondents), the majority performed an open challenge (82.5%). Most respondents (79.2%) correctly recommended as the first-line treatment extensively hydrolyzed cow’s milk formula for a child with mild-to-moderate CMA. Less than half of participants (43.8%) recommended amino acid-based formula for a child with severe CMA (anaphylaxis). Only half of respondents (50.8%) reassessed tolerance to cow’s milk proteins. For assessing tolerance acquisition, more respondents recommended challenge to baked milk compared with fresh cow’s milk (60.5% vs. 39.5%, respectively). This survey study found that only a minority of responding physicians follow current guidelines for diagnosis and management of children with CMA in Poland.
DOI: 10.6084/m9.figshare.26240468.v1
title: Original data and graphs from all Figures in the manuscript

description: Master Graphpad Prism file containing all original data and graphs used for main and supplemental figures. Datasets and graphs are ordered by Figure number.
DOI: 10.6084/m9.figshare.26771899.v2
title: Data for "Effects of winter soil warming on crop biomass carbon loss from organic matter degradation"

description: Supporting data for "Effects of winter soil warming on crop biomass carbon loss from organic matter degradation"
DOI: 10.6084/m9.figshare.27471918.v1
title: SpudDB: A database for accessing potato genomic data

description: Gene Expression, gene coexpression, and syntelog data for the 2024 update of SpudDB ( https://spuddb.uga.edu )
DOI: 10.6084/m9.figshare.27601341.v1
title: An inter-city input-output database distinguishing firm ownership in the Greater China area during 2002-2017

description: The inter-city IO database presents the city-level economic structure and inter-city trade flows for three municipalities, Chongqing with two regions and 335 prefecture cities in 27 provinces in mainland China, as well as Hong Kong, Macao, and Taiwan for 2002, 2007, 2012, and 2017. Each city in mainland China includes 42 commodity sectors distinguishing three types of firm ownership, while HMT each has 42 sectors without firm type information. All folders have been transformed into zip folders.
(1)"Estimate the shares at city-level by firm type" includes the code and relevant results of estimating shares based on census and survey data.
(2)"Other data and code for mainland" provides other relevant data used for constructing inter-city IO by distinguishing firm types for mainland of China (i.e. The concordance, final demand, domestic production and trade data for the mainland of China)
(3)"Inter-city IO for Greater China" provides the trade matrices between the mainland of China and HMT.
(4)“Hongkong Macao & Taiwan” gives the IO tables of HMT
(5) IO table: This folder provide the inter-city IO tables for 340 Chinese cities in mainland China. It also provides the relevant code and relevant IPIO tables to generate inter-city IO for the mainland of China.
DOI: 10.6084/m9.figshare.28786766.v1
title: Results and analysis Midas Tunnel Pile set up.rar

description: The Earth Pressure Balance (EPB) tunnel boring in combination of piling and sequential excavation method (SEM) is used to discuss the influence of piled tunnel lining that under crosses an existing tunnel along the Zhongshan Road. Soil investigation data and numerical simulation was applied to analyze the model. The Mohr -Coulomb (MC) model in MIDAS GTS NX software is used to simulate the settlement levels of semicircular tunnel lining and soil against various pile set ups in order to obtain the best set up for ground improvement. Results indicate a substantial variation in vertical settlement. The. designed 5x4 pile set up has the highest crown settlement but optimal lining uplift control by 138-165% while substantially increasing crown displacement by 32-47%. The 4x4 pile performs all-round by reducing uplift by 184-194 % and less volatile settlement by -12% to -47% to within 5-10mm. The 4x4 pile is more reliable and less volatile in both settlement and uplift. Uniform pile set provides a better settlement trough than non-uniform pile setups. Proposed formulas based on Gaussian function reliably uses n and k parameters to predict settlement for greenfield conditions and project behavior for tunnel under-crossings. The green field prediction function is verified using 12 existing projects and n values are estimated at prediction while back-calculation gives values close to known settlements.
DOI: 10.6084/m9.figshare.6373145.v1
title: Dataset (features extracted from chest CT images) accompanying the paper Automatic emphysema detection using weakly labeled HRCT lung images

description: The dataset contains derived features from CT images of patients and controls scanned at two different centers, Frederikshavn and Aalborg.Each image is represented by 50 feature vectors, where each feature vector describes a volumetric ROIs of size 41 x 41x 41 voxels, extracted at random locations inside the lung mask. The features extracted are Gaussian scale space features, or histograms of intensity values in the ROI after filtering the image. Here we use eight filters (smoothed image, gradient magnitude, Laplacian of Gaussian, three eigenvalues of the Hessian, Gaussian curvature and eigen magnitude), four scales (0.6, 1.2, 2.4 and 4.8 mm), and histograms of ten bins. <br>
DOI: 10.6084/m9.figshare.12513650.v1
title: Supplementary Material for: Nomenclature for Kidney Function and Disease: Executive Summary and Glossary from a Kidney Disease: Improving Global Outcomes (KDIGO) Consensus Conference

description: Medicine
DOI: 10.6084/m9.figshare.21587940.v1
title: Carbon stock and environmental characteristics data

description: Data for carbon stock (response variable) alongside tidal, vegetation, and soil characteristics (predictor variables) in excel format. Data is given for sampling plots within each study site, and metadata is provided for each variable. <br> Tidal characteristics include relative tidal height data. Vegetation characteristics include marsh zone, NVC community, species richness, above-ground biomass and diversity index data. Soil characteristics include dry bulk density and silt: sand fraction data.
DOI: 10.6084/m9.figshare.7725668.v1
title: Untitled Item

description: The data is the supplementary material from the research article "<b>Genome-wide association analysis</b><b>identifies loci associated with resistance against infectious pancreatic necrosis virus in rainbow trout (<i>Oncorhynchus mykiss</i>)"</b><b></b>
DOI: 10.17632/by3yh79hx4
title: A synthetic 3D ground-penetrating radar (GPR) data set across a realistic sedimentary model

description: ______V1____________2019____________________
This data set includes a 3D modeled ground-penetrating radar (GPR) reflection data set as well as the underlying realistic sedimentary model.

We provide a 3D porosity model showing heterogeneities down to the sub-facies scale. We have inferred this model from the publicly available 3D Herten hydrofacies model ('Realization 1' in Supplementary Material of Comunian et al., 2011; see related links down below) and the associated porosity values and ranges (Bayer et al., 2011; see related links down below). Details on the generation of our porosity model are found in the associated article.
We deliver our unprocessed 3D GPR reflection data set modeled using gprMax (Warren et al., 2016; see related links down below) across the entire model surface assuming fresh-water saturated sediments. Details on the transformation of the porosity model into electrical parameter fields used as input for GPR modeling as well as information on the GPR modeling procedure are found in the associated article.

Additionally, we provide basic code to read and visualize the provided data in MATLAB and python. The Readme-file comprises detailed descriptions of the data files and formats and step-by-step instructions on code usage and ParaView visualization.

______V2____________2025____________________
We deliver a unprocessed 3D Multi-Offset (MO) dataset modeled using gprMax (Warren et al., 2016; see related links down below) along selected 2D lines (y = 2, 4, 6, 8 m) assuming fresh-water saturated sediments. Details on the GPR modeling procedure are found in the associated article.
DOI: 10.17632/kb3ngxfmjw
title: BOWS2

description: 10000 resized grayscale images of the BOWS2 dataset:
Bas P, Furon T. BOWS-2 Contest (Break Our Watermarking System). Organized between the 17th of July 2007 and the 17th of April 2008.	Earlier available at: http://bows2.ec-lille.fr.
DOI: 10.6084/m9.figshare.19416827.v1
title: DRAM database built on 24-Mar-2022

description: DRAM database built on 24-Mar-2022 as described here: https://hackmd.io/@astrobiomike/dram-setup-24-Mar-2022
DOI: 10.6084/m9.figshare.20709214.v1
title: Supplementary Material for: Signal Alteration of the Inner Ear on High-Resolution Three-Dimensional Constructive Interference in Steady State Sequence in Patients with Ménière’s Disease and Labyrinthitis

description: <b><i>Introduction:</i></b> The aim of this study is to evaluate signal alteration in the inner ear using three-dimensional (3D)-constructive interference in steady state (CISS) sequence in patients with Ménière’s disease and labyrinthitis and its correlation with clinical and audiological parameters. <b><i>Methods:</i></b> The medical records of the department of otorhinolaryngology were searched for patients with Ménière’s disease or labyrinthitis who underwent MRI with 3D-CISS sequence. Blinded analysis of these patients and of MRI from control subjects without middle or inner ear symptoms was performed to detect any signal asymmetry of the inner ear structures. The results were correlated with clinical symptoms and results of audiological and vestibular tests. <b><i>Results:</i></b> Fifty-eight patients with definite Ménière’s disease and 5 patients with labyrinthitis as well as 41 control exams were included. A separate analysis was performed for patients with probable Ménière’s disease (<i>n</i> = 68). A total of 172 3D-CISS sequences were analyzed by 2 blinded independent neuroradiologists. A CISS-hypointense signal of the inner ear structures was found in 3 patients with definite Ménière’s disease (5.2%), in 4 patients with probable Ménière’s disease (5.9%), and 2 patients with labyrinthitis (40%). No CISS hypointensity was found in the control group. Although no significant difference in symptoms or audiological test results was found between patients with and without this signal change, the side of hypointensity was frequently correlated with the symptomatic side and with hearing impairment. <b><i>Discussion/Conclusion:</i></b> CISS hypointensity of the inner ear structures was evident in patients with clinical conditions other than vestibular schwannoma – more frequently in labyrinthitis than in Ménière’s disease. This signal alteration was frequently encountered on the same symptomatic side as that of the pathological audiology tests, but it is not a predictor for hearing or vestibular impairment.
DOI: 10.6084/m9.figshare.5126347.v1
title: Supplementary Material for: Addition of Taxane to Induction Therapy in Head and Neck Malignancies: A Systematic Review and Meta-Analysis of Randomized Controlled Trials

description: <b><i>Background:</i></b> Head and neck cancer, mostly squamous cell carcinoma, ranks sixth among the most common cancers. Despite progress in treatment in recent years, survival remains poor. Since induction chemotherapy has been associated with survival benefit, it is a reasonable treatment option. The standard protocol up to recently has been cisplatin and 5-flourouracil. The addition of taxanes to the standard induction protocol has shown superiority in terms of the overall response rate. Nevertheless, not all trials demonstrated survival benefit. We aimed to evaluate the effect of taxane added to the standard protocol of induction therapy. <b><i>Methods:</i></b> We performed a systematic review and meta-analysis of randomized controlled trials that compared the addition of taxane to the standard induction protocol of cisplatin and 5-flourouracil for patients with head and neck malignancy. We searched The Cochrane library, PubMed, LILACS, conference proceedings, and references of published trials. Two reviewers independently assessed the quality of the trials and extracted data. Hazard ratios (HRs) for time-to-event were determined and pooled. <b><i>Results:</i></b> A total of 4 trials comprising 1,441 patients were included in this meta-analysis. All patients were available for the meta-analysis of overall survival. Patients treated with the addition of taxane had statistically significant overall survival [HR = 0.82, 95% confidence interval (CI) 0.71-0.94] and progression-free survival (HR = 0.82, 95% CI 0.72-0.93). No effect was observed in larynx preservation rate (relative risk = 0.88, 95% CI 0.64-1.19). The rate of hematological adverse events was higher in the taxane group than in the control group. <b><i>Conclusions:</i></b> These results suggest that induction therapy with the addition of taxane is superior to induction therapy with cisplatin and 5-flourouracil in terms of overall survival and progression-free survival. The higher rate of neutropenia and neutropenic fever should be taken into consideration when making treatment decisions.
DOI: 10.6084/m9.figshare.8115971.v2
title: 20190512 PI PPV study data repository

description: This file is data set from the results of "The effects of hemodynamic management using the trend of the perfusion index and pulse pressure variation on tissue perfusion".<br>
DOI: 10.6084/m9.figshare.8330285.v3
title: Wind power observation

description: The data were tested based on the wind power, wind direction, and wind speed data collected from wind farms in regions A, B, C in Jeju Island in order to predict the short-term wind power.
DOI: 10.17632/8gzxg4zyr4
title: Depressive Symptoms in Children and Adolescents with Autism Spectrum Disorder: Application of Cognitive Behavioral Therapy in School

description: Children and adolescents with Autism Spectrum Disorder (ASD) often exhibit symptoms of various mental disorders along with the defining features of ASD. High rates of several mental disorders have been reported in children and adolescents with or without ASD, such depression, emotional regulation difficulties, and can occur in children of all ages with evidence of ASD. Cognitive and Behavioral Therapy (CBT), through various therapeutic techniques and programs, can help children and adolescents with evidence of autism to recognize and manage their symptoms. The present study aims to examine whether a therapeutic CBT program can improve symptoms of depression a in children and adolescents with elements of ASD in the school context. Data were collected from 102 students (intervention group, N=67), (control group, N=35), Primary and Secondary Education with evidence of autism and coexisting mental disorder aged 7-16 years, through therapeutic intervention and quantitative research. The research was carried out within the school framework with the consent of the children's parents during the 2021-2023. A significant reduction in symptoms of depression were observed after the intervention. There wasn’t a gender difference before intervention. CBT programs are important tools for reducing symptoms of depression in children and adolescents with or without ASD.
Keywords: [symptoms of depressions, Autism Spectrum Disorder, Cognitive and Behavioral Therapy, school context]
DOI: 10.26188/5da55346af5dc
title: EPiC database - Cross laminated timber (CLT)

description: This material is part of the free Environmental Performance in Construction (EPiC) Database. The EPiC Database contains embodied environmental flow coefficients for 250+ construction materials using a comprehensive hybrid life cycle inventory approach.<br><br>Cross laminated timber (CLT) is a manufactured timber product, similar to plywood. Solid timber members are bonded together, with the grain alternating by 90 degrees for each lamination. CLT is much thicker than traditional plywood and has superior structural capabilities. It has excellent dimensional stability, strength and rigidity. <br><br>CLT is fabricated using a range of different timber varieties. It is typically bonded together using melamine urea formaldehyde, polyurethane or other adhesives. <br><br>CLT has different structural capabilities when compared with conventional timber, and acts as a sheet product, rather than a framing product. It can be used as a complete floor, wall or roof system, without the need for additional supporting members.
DOI: 10.6084/m9.figshare.12895127.v1
title: Gene database of Thermococcus kodakarensis KOD1

description: <i>Thermococcus kodakarensis</i> is a thermophilic archaeon whose repertoire of thermostable enzymes have found use in industrial biotechnology applications. Capable of surviving at high temperatures of 80 to 95 <sup>o</sup>C, the archaeon’s growth is also stimulated by elemental sulphur. More importantly, the archaeon is an obligate heterotroph capable of fermenting a variety of organic compounds such as peptides, amino acids, and sugars in the absence of sulphur. This work sought to provide fundamental information about the genetic repertoire of <i>T. kodakarensis </i>KOD1 by parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the database should find use in a variety of fundamental and applied biology workflows such as profiling useful enzymes from the archaeon, as well as cloning candidate genes into other expression hosts.
DOI: 10.6084/m9.figshare.13473168.v2
title: CLIP datasets

description: Processed multi-modal cancer cell line omics datasets used by the CLIP pipeline. For more details: https://www.biorxiv.org/content/10.1101/2020.01.31.929372v1.full
DOI: 10.6084/m9.figshare.14096209.v3
title: fMRI Teaching Materials

description: These are some datasets that I'm using for teaching. There are three separate zip files, corresponding to the data of one experiment each. All were acquired at the 7T scanner at the Spinoza Centre for Neuroimaging, Amsterdam. All data are resampled to the 59k HCP surface format. <br>1. an HRF mapper (TR 0.945s, 2mm iso), consisting of a single run of 63 presentations of a full-field checkerboard visual stimulus. There is additional data for this single run dataset: eye tracking (saccade and blink onset times), and fmriprep confound outputs. This allows the deconvolution of impulse-response functions from the BOLD data. <br>2. a somatotopic motor-mapper experiment (TR 1.6s, 1.8mm iso), a single subject's five runs averaged across runs after fmriprep preprocessing. The experimental design is encoded in the `sub-01_ses-01_task-soma_run-median_events.tsv` tsv file, and can be used as input to GLM and more elaborate analyses. <br> 3. a retinotopic mapping experiment (TR 1.5s, 1.6/2.0mm iso). , a single subject's 43 runs from 4 sessions averaged across runs after fmriprep preprocessing. The visual design matrix of the experiment, which can be used as the basis of a population receptive field analysis, is provided as `vis_design.mat`<br><br>
DOI: 10.6084/m9.figshare.26502910.v1
title: Appendix: Co-creating eLearning resources through a virtual hackathon

description: In this paper, we report an innovative approach to engaging students as co-creators in eLearning resource development by using a virtual hackathon as well as the evaluation outcomes of this approach.
DOI: 10.6084/m9.figshare.29005208.v1
title: Supplementary Material for: Intradialytic Cognitive and Aerobic Exercise Training to Preserve Cognitive Function: IMPCT, A Multi-Dialysis Center 2x2 Factorial Block-Randomized Controlled Trial

description: Introduction: Patients with end-stage kidney disease (ESKD) develop cognitive impairment due to comorbidities and dialysis dependence. Among community-dwelling older adults, cognitive (CT) and exercise training (ET) are promising interventions to preserve cognition; these interventions may be tailored for adults undergoing in-center hemodialysis. 

Methods: Adult (≥18 years) English-speaking patients undergoing hemodialysis (within 3 months to 3 years of initiation) were enrolled in a 2x2 factorial randomized controlled trial: Interventions Made to Preserve Cognitive Function Trial (IMPCT). Participants (n=121) were block-randomized (09/2018-02/2023) into 4 arms: control (SC) (n=26), intradialytic web-based CT (n=31), ET using foot peddler (n=29), and combined CT+ET (n=35). Participants underwent assessments at baseline and 3 months for executive function, global cognitive function, clinical outcomes, and patient-centered outcomes. We estimated 3-month executive function change (primary outcome) and secondary outcomes using linear regression.

Results: There were no differences in 3-month executive function change by arm. Participants exhibited improvement in 3-month global cognitive function in CT+ET arm (Montreal Cognitive Assessment score difference=2.1, 95%CI:0.4-3.9), and self-reported 3-month improvement in perceived health change (score difference=0.8, 95%CI:0.2-1.4) in ET arm.

Conclusion: Clinicians may encourage CT+ET for hemodialysis patients to improve short-term global cognitive function and perceived health. The long-term benefits of these interventions warrant further study. 
This trial was registered at clinicaltrials.gov (NCT03616535). URL: https://clinicaltrials.gov/study/NCT03616535.
DOI: 10.6084/m9.figshare.3564435.v1
title: Appendix B. Life history pattern classification method.

description: Life history pattern classification method.
DOI: 10.6084/m9.figshare.4483823.v1
title: Data for PseudoSSIM model for sub-block (4x4, 8x8) prediction using covariance in H.264/AVC

description: Data for PseudoSSIM model for sub-block (4x4, 8x8) prediction using covariance in H.264/AVC <br> Code book: "BlockSize","SSIM","OneMinSSIM1k","Covariance","AbsMeanDiff","PseudoSSIM","TradDist","OneMinSSIM","LogCovar" <br> "BlockSize", 8 for 8x8, 4 for 4x4 "SSIM", Structural Similarity (SSIM) measure "OneMinSSIM1k", 1-SSIM times 1000, to make it an integer "Covariance", statistical component of SSIM "AbsMeanDiff", additional measure of calculating difference between original and reconstructed "PseudoSSIM", proposed measure "TradDist", L1 norm of Sum of Absolute Transform Difference, (SATD) "OneMinSSIM", 1-SSIM used make SSIM score zero based "LogCovar", Log value of covariance scaled against a maximum covariance score observed, ~13k. <br>
DOI: 10.17632/k864xjhrw6
title: MNISTDigit

description: A dataset containing images of handwritten english numerals from 0-9 obtained from National Institute of Standards and Technology. It consists of greyscale images of handwritten digits and
consists of 60000 images of size 28*28 for training and 10000 images as test
examples.