cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20064695
title: Additional file 4 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line

description: Additional file 4: Table S4. The total numbers of CAZy modules for each family identified in the PBL host and in the gut microbiome.
DOI: 10.6084/m9.figshare.20064701
title: Additional file 6 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line

description: Additional file 6: Table S6. Lignocellulose-degrading CAZymes and lignocellulose-binding modules identified in the PBL host and in the gut microbiome.
DOI: 10.6084/m9.figshare.12731617
title: Additional file 1 of Comprehensive analysis and establishment of a prediction model of alternative splicing events reveal the prognostic predictor and immune microenvironment signatures in triple negative breast cancer

description: Additional file 1: The optimal OS-related AS events was selected by LASSO regression for constructing the prediction models.
DOI: 10.6084/m9.figshare.20064707.v1
title: Additional file 7 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line

description: Additional file 7. Protein sequences of identified lignocellulose-degrading CAZymes genes in the PBL gut transcriptome and metagenome.
DOI: 10.6084/m9.figshare.20064710
title: Additional file 8 of Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line

description: Additional file 8: Table S7. The predicted enzymatic function of CAZy modules identified in the PBL host and in the gut microbiome.
DOI: 10.6084/m9.figshare.20072221.v1
title: Long noncoding RNA (lncRNA) metallothionein 1 J, pseudogene (MT1JP) is downregulated in triple-negative breast cancer and upregulates microRNA-138 (miR-138) to downregulate hypoxia-inducible factor-1α (HIF-1α)

description: Triple-negative breast cancer (TNBC) is a highly invasive subtype of breast cancer. This study explored the molecular mechanism and influences of metallothionein 1 J, pseudogene (MT1JP), microRNA-138 (miR-138), and hypoxia-inducible factor-1α (HIF-1α) on TNBC cell proliferation and migration. We confirmed TNBC cases by immunohistochemistry (IHC) staining. The expression of MT1JP in two types of tissue collected from 78 TNBC patients was detected by performing real-time quantitative fluorescence PCR (RT-qPCR). To further evaluate the relationship among MT1JP, miR-138 and HIF-1α, expression vectors of MT1JP and HIF-1α, as well as miR-138 mimic and inhibitor, were delivered into BT-549 cells. We observed that MT1JP was downregulated in TNBC. MT1JP was positively correlated with miR-138 but negatively correlated with HIF-1α in TNBC tissues. In TNBC cells, upregulation of miR-138 and downregulation of HIF-1α were observed after overexpression of MT1JP. In addition, overexpression of miR-138 resulted in downregulation of HIF-1α but did not affect the expression of MT1JP. Decreased proliferation rate of TNBC cells was observed after overexpression of MT1JP and miR-138. HIF-1α increased cell proliferation and migration. HIF-1α also suppressed the role of MT1JP and miR-138 in TNBC cell proliferation and migration. In conclusion, our findings demonstrated that MT1JP inhibited TNBC by regulating the miR-138/HIF-1α axis, indicating that MT1JP might serve as a biomarker or target for TNBC treatment.
DOI: 10.6084/m9.figshare.12731536.v1
title: Additional file 8 of High-efficiency procedure to characterize, segment, and quantify complex multicellularity in raw micrographs in plants

description: Additional file 8: Dataset S2. Parameter identification of mCherry-labeled cells in a vertical Arabidopsis root section by ImageJ software.
DOI: 10.17632/9m53f4x2d8.1
title: Legal Writing

description: Legal Writing, Society and Culture
DOI: 10.6084/m9.figshare.20071677
title: Efficacy comparison of immune treating strategies for NSCLC patients with negative PD-L1 expression

description: We intended to compare and grade the proposed immune treating strategies for non-small cell lung cancer (NSCLC) with negative Programmed Cell Death Ligand 1(PD-L1). We compared the efficacy of single immune checkpoint inhibitor (ICI), single ICI plus chemotherapy, and doublet ICIs with chemotherapy alone, as well as single ICI plus radiotherapy with single ICI for negative PD-L1 (&lt;1%) NSCLC patients. Hazard Ratio (HR) and 95% confidence interval (CI) of progression-free survival (PFS) and overall survival (OS) were used as outcomes. We included 23 randomized control trials with 4665 patients. Compared with chemotherapy alone, single ICI, single ICI plus chemotherapy and doublet ICIs all showed a better OS (0.84 [0.71, 0.99] ; 0.77 [0.69, 0.85] ; 0.64 [0.53, 0.77])), while single ICI plus chemotherapy and doublet ICIs showed a better PFS (0.68 [0.61, 0.75] ; 0.69 [0.56, 0.85]). Additionally, single ICI plus radiotherapy obtained a greater pooled PFS (0.49 [0.28–0.87]) than single ICI. Both single ICI plus chemotherapy and doublet ICIs were probably better treatment decisions than chemotherapy alone for negative PD-L1 NSCLC patients. Also, single ICI plus radiotherapy carved out a new strategy.
DOI: 10.6084/m9.figshare.20072268
title: Empirical Correlations between the Spectral Input Energy and Spectral Acceleration

description: Correlating different intensity measures (IMs) enables the joint consideration of multiple IMs in various performance-based earthquake engineering applications, such as ground motion selection. The correlations between the spectral input energy and spectral accelerations have not been previously examined. This study develops a correlation model quantifying the uncertainties due to GMPE selection and a finite sample size. The results show a strong correlation between the spectral amplitudes at the same period, and the correlation decreases as the period difference increases. With the proposed model, ground motion characteristics reflected by the input energy can be explicitly considered in performance-based earthquake engineering applications.
DOI: 10.17028/rd.lboro.14828796.v1
title: Supplementary information files for Two superconductor-insulator phase transitions in the spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub> O<sub>4-δ</sub> induced by ionic liquid gating

description: Supplementary files for article Two superconductor-insulator phase transitions in the spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub> O<sub>4-δ</sub> induced by ionic liquid gating. The associations between emergent physical phenomena (e.g., superconductivity) and orbital, charge, and spin degrees of freedom of 3d electrons are intriguing in transition metal compounds. Here, we successfully manipulate the superconductivity of spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub>O<sub>4-δ</sub> (LTO) by ionic liquid gating. A dome-shaped superconducting phase diagram is established, where two insulating phases are disclosed both in heavily electron-doping and hole-doping regions. The superconductor-insulator transition (SIT) in the hole-doping region can be attributed to the loss of Ti valence electrons. In the electron-doping region, LTO exhibits an unexpected SIT instead of a metallic behavior despite an increase in carrier density. Furthermore, a thermal hysteresis is observed in the normal state resistance curve, suggesting a first-order phase transition. We speculate that the SIT and the thermal hysteresis stem from the enhanced 3d electron correlations and the formation of orbital ordering by comparing the transport and structural results of LTO with the other spinel oxide superconductor MgTi<sub>2</sub>O<sub>4</sub> (MTO), as well as analyzing the electronic structure by first-principles calculations. Further comprehension of the detailed interplay between superconductivity and orbital ordering would contribute to the revealing of unconventional superconducting pairing mechanism.
DOI: 10.6084/m9.figshare.20064940
title: Additional file 1 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 1. DEGs in C. ficifolia leaf after infection by FOC at 2 dpi compared with control.
DOI: 10.6084/m9.figshare.20064955
title: Additional file 6 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 6. DEGs and DAPs in C. ficifolia leaf after infection by FOC at 4dpi.
DOI: 10.6084/m9.figshare.20064965.v1
title: Additional file 1 of A 13.42-kb tandem duplication at the ASIP locus is strongly associated with the depigmentation phenotype of non-classic Swiss markings in goats

description: Additional file 1: Table S1. Summary of the short-read sequencing data and mapping statistics for 169 domestic goats and 21 Bezoars included in this study.
DOI: 10.6084/m9.figshare.12731539
title: Additional file 9 of High-efficiency procedure to characterize, segment, and quantify complex multicellularity in raw micrographs in plants

description: Additional file 9: Dataset S3. Modification of centroid coordinates of cells in a vertical Arabidopsis root section for analysis with SR-Tesseler software.
DOI: 10.6084/m9.figshare.12731539.v1
title: Additional file 9 of High-efficiency procedure to characterize, segment, and quantify complex multicellularity in raw micrographs in plants

description: Additional file 9: Dataset S3. Modification of centroid coordinates of cells in a vertical Arabidopsis root section for analysis with SR-Tesseler software.
DOI: 10.6084/m9.figshare.6964487
title: Effect of acetamiprid on the immature murine testes

description: Neonicotinoids, such as acetamiprid (ACE), a pesticide used worldwide, are believed to be safe for human use. These molecules are structurally similar to nicotine, act as nicotinic acetylcholine receptor (nAChR) agonists, and were shown to be associated with neuromuscular and reproductive disorders, but these experiments were primarily performed in mature animals. In this study, the effects of ACE on the testes of immature mice were examined. The exposure of 3-week-old mice to ACE-containing water for 180 days led to a decrease in body weight and mildly affected spermatogenesis. Additionally, the expression of testosterone-metabolism genes, nAChR subunit genes, and proliferation-associated genes decreased in the testes of ACE-treated mice. Our results show that immature rodents may be less sensitive to ACE than mature ones, that mice may be more likely to accumulate ACE than rats, and that the development of disorders may be affected by the accumulation of ACE in the testes.
DOI: 10.17632/yhfb587cxy.1
title: Estudo de adequabilidade final para implantação de aterro sanitário no município de Almadina-Bahia/Brasil

description: Com o intuito de contribuir para o gerenciamento de resíduos sólidos, esse estudo tem como objetivo realizar a identificação de áreas adequadas para implantação de aterro sanitário no município de Almadina na Bahia. Utilizando o geoprocessamento, através do Sistema de Informações Geográficas (SIG), análise multicritérios e lógica fuzzy. Foram organizadas sete bases georreferenciadas das características da área de estudo, sendo, a distância mínima dos recursos hídricos, das estradas, dos núcleos urbanos, informações da declividade, geologia, solos e uso e cobertura da terra. Aplicou-se os pesos para as classes de cada uma das bases, em seguida, definiu-se qual o percentual de importância das variáveis. De acordo com os pesos e critérios adotados foi gerado o mapa final, o qual foi categorizado nas classes: Muito baixa, Baixa, Moderada, Alta, Muito Alta, classificadas de acordo com o grau de adequabilidade.
DOI: 10.6084/m9.figshare.11805060
title: Additional file 13 of Immune-related miRNA-mRNA regulation network in the livers of DHAV-3-infected ducklings

description: Additional file 13: The list of 155 DEMs and their target genes in the negative miRNA-mRNA network.
DOI: 10.6084/m9.figshare.12731698
title: Additional file 3 of The critical role of dysregulated Hh-FOXM1-TPX2 signaling in human hepatocellular carcinoma cell proliferation

description: Additional file 3: Table S5. Function clustering of DEGs.
DOI: 10.17028/rd.lboro.14828796
title: Supplementary information files for Two superconductor-insulator phase transitions in the spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub> O<sub>4-δ</sub> induced by ionic liquid gating

description: Supplementary files for article Two superconductor-insulator phase transitions in the spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub> O<sub>4-δ</sub> induced by ionic liquid gating. The associations between emergent physical phenomena (e.g., superconductivity) and orbital, charge, and spin degrees of freedom of 3d electrons are intriguing in transition metal compounds. Here, we successfully manipulate the superconductivity of spinel oxide Li<sub>1±x</sub>Ti<sub>2</sub>O<sub>4-δ</sub> (LTO) by ionic liquid gating. A dome-shaped superconducting phase diagram is established, where two insulating phases are disclosed both in heavily electron-doping and hole-doping regions. The superconductor-insulator transition (SIT) in the hole-doping region can be attributed to the loss of Ti valence electrons. In the electron-doping region, LTO exhibits an unexpected SIT instead of a metallic behavior despite an increase in carrier density. Furthermore, a thermal hysteresis is observed in the normal state resistance curve, suggesting a first-order phase transition. We speculate that the SIT and the thermal hysteresis stem from the enhanced 3d electron correlations and the formation of orbital ordering by comparing the transport and structural results of LTO with the other spinel oxide superconductor MgTi<sub>2</sub>O<sub>4</sub> (MTO), as well as analyzing the electronic structure by first-principles calculations. Further comprehension of the detailed interplay between superconductivity and orbital ordering would contribute to the revealing of unconventional superconducting pairing mechanism.
DOI: 10.17632/c2hb33kg46.1
title: SD-3000

description: The purpose of the dataset selection was to train a YOLO-based machine learning model for shadow detection. In surveillance systems, where accurate and timely shadow identification is crucial to enhancing security standards, this approach finds extensive application. The focus of the collection is on several shadow classes, including human, dog, cow, and gun shadows, which makes it flexible enough to be used in a range of surveillance scenarios.

• Human Shadow: The SD-3000 Dataset consists of 956 images associated with human shadows. Among these, 669 images are allocated for training, 143 for testing, and another 143 for validation. 

• Dog Shadow: For the dog shadow class, there are 877 images in total. Out of these, 614 are designated for training, 132 for testing, and an additional 132 for validation. 

• Cow Shadow: The cow shadow class is represented by 357 images in the dataset. Among these, 250 images are earmarked for training, 54 for testing, and an identical 54 for validation. 

• Gun Shadow: The gun shadow class contributes 810 images to the dataset. Of these, 567 are utilized for training, 122 for testing, and an equivalent 122 for validation.
DOI: 10.6084/m9.figshare.11805063
title: Additional file 14 of Immune-related miRNA-mRNA regulation network in the livers of DHAV-3-infected ducklings

description: Additional file 14: The primers used in this study.
DOI: 10.6084/m9.figshare.14304929.v1
title: Self-starting single control charts for multivariate processes: a comparison of methods

description: Abstract Paper aims Based on challenges faced in real SPC application, this paper considers implementation and performance of self-starting methodology in multivariate process monitoring. Originality Traditional omnibus charts depend on in-control process parameters while parameters are generally known. However, in real settings, this information may not exist. This paper proposes and compares novel methods to overcome this difficulty. Research method This paper introduces, evaluates the performance and implements multivariate self-starting charts (SSMEC, SSMELR, and SSMME) for multivariate process monitoring. Main findings Proposed SSMME chart is the best choice in real application because it proves better performance in response to various simulation scenarios and gives diagnostic tools for further analysis. Implications for theory and practice The main contributions are the comparison of different self-starting approaches and introducing a novel multivariate self-starting chart that are suitable in real process monitoring and illustrate the benefit of the selected SPC chart with hypertension monitoring.
DOI: 10.6084/m9.figshare.20064949.v1
title: Additional file 4 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 4. DAPs in C. ficifolia leaf after infection by FOC at 4 dpi compared with control.
DOI: 10.6084/m9.figshare.12731676
title: Additional file 1 of Quality standard of traditional Chinese medicines: comparison between European Pharmacopoeia and Chinese Pharmacopoeia and recent advances

description: Additional file 1: Table S1. Comparison of herbal drugs recorded in both European Pharmacopoeia and Chinese Pharmacopoeia.
DOI: 10.6084/m9.figshare.12731676.v1
title: Additional file 1 of Quality standard of traditional Chinese medicines: comparison between European Pharmacopoeia and Chinese Pharmacopoeia and recent advances

description: Additional file 1: Table S1. Comparison of herbal drugs recorded in both European Pharmacopoeia and Chinese Pharmacopoeia.
DOI: 10.6084/m9.figshare.14305526
title: Changes in bacterial community of soil induced by long-term straw returning

description: ABSTRACT: Straw returning is an effective way to improve soil quality. Whether the bacterial community development has been changed by long-term straw returning in non-calcareous soil is not clear. In this study, the following five treatments were administered: soil without fertilizer (CK); wheat and corn straw returning (WC); wheat straw returning with 276 kg N ha−1 yr−1 (WN); manure, 60,000 kg ha−1 pig manure compost (M) and wheat and corn straw returning with 276 kg N ha−1 yr−1 (WCN). The high-throughput 16S rRNA sequencing technology was used to evaluate the bacterial communities. The results showed that the community was composed mostly of two dominant groups (Proteobacteria and Acidobacteria). Bacterial diversity increased after the application of straw and manure. Principal component analyses revealed that the soil bacterial community differed significantly between treatments. The WCN treatment showed relatively higher total soil N, available P, available K, and organic carbon and invertase, urease, cellulase activities and yield than the WC treatment. Our results suggested that application of N fertilizer to straw returning soil had significantly higher soil fertility and enzyme activity than straw returning alone, which resulted in a different bacterial community composition, Stenotrophomonas, Pseudoxanthomonas, and Acinetobacter which were the dominant genera in the WC treatment while Candidatus, Koribacter and Granulicella were the dominant genera in the WCN treatment. To summarize, wheat and maize straw returning with N fertilizer would be the optimum proposal for improving soil quality and yield in the future in non-calcareous fluro-acquic-wheat and maize cultivated soils in the North China Plain in China.
DOI: 10.6084/m9.figshare.24269267
title: Additional file 10 of CmNAC25 targets CmMYB6 to positively regulate anthocyanin biosynthesis during the post-flowering stage in chrysanthemum

description: Additional file 10. Individual data values.
DOI: 10.6084/m9.figshare.20064955.v1
title: Additional file 6 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 6. DEGs and DAPs in C. ficifolia leaf after infection by FOC at 4dpi.
DOI: 10.6084/m9.figshare.24269267.v1
title: Additional file 10 of CmNAC25 targets CmMYB6 to positively regulate anthocyanin biosynthesis during the post-flowering stage in chrysanthemum

description: Additional file 10. Individual data values.
DOI: 10.6084/m9.figshare.14304929
title: Self-starting single control charts for multivariate processes: a comparison of methods

description: Abstract Paper aims Based on challenges faced in real SPC application, this paper considers implementation and performance of self-starting methodology in multivariate process monitoring. Originality Traditional omnibus charts depend on in-control process parameters while parameters are generally known. However, in real settings, this information may not exist. This paper proposes and compares novel methods to overcome this difficulty. Research method This paper introduces, evaluates the performance and implements multivariate self-starting charts (SSMEC, SSMELR, and SSMME) for multivariate process monitoring. Main findings Proposed SSMME chart is the best choice in real application because it proves better performance in response to various simulation scenarios and gives diagnostic tools for further analysis. Implications for theory and practice The main contributions are the comparison of different self-starting approaches and introducing a novel multivariate self-starting chart that are suitable in real process monitoring and illustrate the benefit of the selected SPC chart with hypertension monitoring.
DOI: 10.6084/m9.figshare.20064986
title: Additional file 8 of A 13.42-kb tandem duplication at the ASIP locus is strongly associated with the depigmentation phenotype of non-classic Swiss markings in goats

description: Additional file 8: Table S6. The genome-coverage analysis and predicted copy numbers of the 13,420-bp duplicated sequence in the total 70 goats with Swiss markings from four domestic goat populations.
DOI: 10.6084/m9.figshare.14305307.v1
title: Evaluating the effectiveness of university agricultural extension test stations using Wuli-Shili-Renli methodology

description: ABSTRACT: Wuli-Shili-Renli (WSR) methodology was used to assess the effects of systematic management on university agricultural extension test stations, in order to understand areas for further optimization. We developed a framework model and evaluation index system, of which, the weights of the evaluation index system were determined using AHP. Using an agricultural extension test station of Hebei Agricultural University as an example, we interviewed and surveyed in total of 225 university extension experts from nine test stations. Assessment showed that the test station system organization produces desirable societal benefits and improvements. In addition, the organizational structure and job allocation were found to act as high-impact factors in improving the optimal system function, with the university extension experts functional better in the incentive and guarantee mechanism than other factors. Our investigation validated that the university extension experts were critical in designing the incentives and evaluation programs.
DOI: 10.6084/m9.figshare.20064946
title: Additional file 3 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 3. DAPs in C. ficifolia leaf after infection by FOC at 2 dpi compared with control.
DOI: 10.6084/m9.figshare.20064946.v1
title: Additional file 3 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 3. DAPs in C. ficifolia leaf after infection by FOC at 2 dpi compared with control.