cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.868738
title: Slow shell building, a possible trait for resistance to the effects of acute ocean acidification

description: Increasing anthropogenic carbon dioxide is altering marine carbonate chemistry through a process called ocean acidification. Many calcium carbonate forming organisms are sensitive to changes in marine carbonate chemistry, especially mollusk bivalve larvae at the initial shell building stage. Rapid calcification, limited energy reserves, and more exposed calcification surfaces, are traits at this stage that increase vulnerability to ocean acidification through our previously argued kinetic-energetic hypothesis. These developmental traits are common to broadcast spawning bivalve species that are the focus of most ocean acidification studies to date. Some oyster species brood their young, which results in slower development of the embryos through the initial shell formation stage. We examined the responses of the brooding Olympia oyster, Ostrea lurida, during their initial shell building stage. We extracted fertilized eggs from, O. lurida, prior to shell development, then exposed developing embryos to a wide range of marine carbonate chemistry conditions. Surprisingly, O. lurida showed no acute negative response to any ocean acidification treatments. Compared to the broadcast spawning Pacific oyster, Crassostrea gigas, calcification rate and standardized endogenous energy lipid consumption rate were nearly 10 and 50 times slower, respectively. Our results suggest that slow shell building may lessen the energetic burden of acidification at this stage and provides additional support for our kinetic-energetic hypothesis. Furthermore, these results may represent an example of exaptation; fitness conveyed by a coopted trait that evolved for another purpose, a concept largely lacking in the current perspective of adaptation and global climate change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-23.
description: Supplement to: Waldbusser, George G; Gray, Matthew W; Hales, Burke; Langdon, Chris; Haley, Brian A; Gimenez, Iria; Smith, Stephanie R; Brunner, Elizabeth L; Hutchinson, Greg (2016): Slow shell building, a possible trait for resistance to the effects of acute ocean acidification. Limnology and Oceanography, 61(6), 1969-1983
DOI: 10.1594/pangaea.966531
title: Seawater carbonate chemistry and shell mineralogy, epibiont abundance, and growth of juvenile American lobster Homarus americanus

description: We examined the combined effects of ocean warming and acidification on shell mineralogy, epibiont abundance, and growth in early benthic juveniles of American lobster Homarus americanus H. Milne Edwards, 1837 (Decapoda: Astacidea: Nephropidae), a commercially important species. Lobsters were grown under six different temperature/pCO2 treatment conditions over 52 days (three replicates per treatment) aligned with environmentally relevant as well as predicted future extremes.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-03-14.
DOI: 10.1594/pangaea.778150
title: Seawater carbonate chemistry and Strongylocentrotus droebachiensis larval and juvenile survival and reporductive processes, 2012

description: Anthropogenic CO2 emissions are acidifying the world's oceans. A growing body of evidence demonstrates that ocean acidification can impact survival, growth, development and physiology of marine invertebrates. Here we tested the impact of long term (up to 16 months) and trans life-cycle (adult, embryo/larvae and juvenile) exposure to elevated pCO2 (1200 µatm, compared to control 400 µatm) on the green sea urchin Strongylocentrotus droebachiensis. Female fecundity was decreased 4.5 fold when acclimated to elevated pCO2 for 4 months during reproductive conditioning while no difference was observed in females acclimated for 16 months. Moreover, adult pre-exposure for 4 months to elevated pCO2, had a direct negative impact on subsequent larval settlement success. Five to nine times fewer offspring reached the juvenile stage in cultures using gametes collected from adults previously acclimated to high pCO2 for 4 months. However, no difference in larval survival was observed when adults were pre-exposed for 16 months to elevated pCO2. pCO2 had no direct negative impact on juvenile survival except when both larvae and juveniles were raised in elevated pCO2. These negative effects on settlement success and juvenile survival can be attributed to carry-over effects from adults to larvae and from larvae to juveniles. Our results support the contention that adult sea urchins can acclimate to moderately elevated pCO2 in a matter of a few months and that carry-over effects can exacerbate the negative impact of ocean acidification on larvae and juveniles.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Dupont, Sam; Dorey, Narimane; Stumpp, Meike; Melzner, Frank; Thorndyke, Mike (2013): Long-term and trans-life-cycle effects of exposure to ocean acidification in the green sea urchin Strongylocentrotus droebachiensis. Marine Biology, 160(8), 1835-1843
DOI: 10.1594/pangaea.885872
title: pH variations and relationship with oxygen concentration in the DBL

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-02-02.
DOI: 10.1594/pangaea.972826
title: Seawater carbonate chemistry and acute physiological response of Haliotis midae to acute exposure to hypercapnia

description: This study investigated the acute pH effects in isolation as an initial step in studying the acute physiological response of Haliotis midae to provide a mechanistic basis for the design of complex multifactorial studies, imitating more closely what occurs on farms and in the natural habitat.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-09-27.
DOI: 10.1594/pangaea.874959
title: Ocean acidification adversely influences metabolism, extracellular pH and calcification of an economically important marine bivalve, Tegillarca granosa

description: Oceanic uptake of CO2 from the atmosphere has significantly reduced surface seawater pH and altered the carbonate chemistry within, leading to global Ocean Acidification (OA). The blood clam, Tegillarca granosa, is an economically and ecologically significant marine bivalve that is widely distributed along the coastal and estuarine areas of Asia. To investigate the physiological responses to OA, blood clams were exposed to ambient and three reduced seawater pH levels (8.1, 7.8, 7.6 and 7.4) for 40 days, respectively. Results obtained suggest that OA suppresses the feeding activity and aerobic metabolism, but elevates proteins catabolism of blood clams. OA also causes extracellular acidosis and decreases haemolymph Ca2+ concentration. In addition, our data also suggest that OA impairs the calcification process and inner shell surface integrity. Overall, OA adversely influences metabolism, acid-base status and calcification of blood clams, subsequently leading to a decrease in the fitness of this marine bivalve species.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-04-26.
description: Supplement to: Zhao, Xinguo; Shi, Wei; Han, Yu; Liu, Saixi; Guo, Cheng; Fu, Wandong; Chai, Xueliang; Liu, Guangxu (2017): Ocean acidification adversely influences metabolism, extracellular pH and calcification of an economically important marine bivalve, Tegillarca granosa. Marine Environmental Research, 125, 82-89
DOI: 10.1594/pangaea.972995
title: Seawater carbonate chemistry and Montipora capitata and Porites compressa physiological measurements for experimental corals and parent colonies from 2014-2015

description: Following natural thermal stress in two consecutive years (2014 and 2015), we evaluated the effects of feeding and simulated ocean acidification on the physiological recovery of Montipora capitata and Porites compressa sourced from Kāne'ohe Bay and Waimānalo Bay, Hawai'i.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-10-10.
DOI: 10.1594/pangaea.973022
title: Seawater carbonate chemistry and calcification data for widespread scope for coral adaptation under combined ocean warming and acidification

description: Here, we take advantage of the ability to sample genetically distinct coral colonies (genets) to produce genetically identical clonal fragments (ramets) and use an identical twin design to estimate the broad sense heritability (H2) and potential for adaptation of coral calcification rates under warming, acidification and the combination of both factors. Corals of eight species were exposed to one of four treatments: (i) control (present-day temperature and pH), (ii) ocean warming (+2°C and present-day pH), (iii) ocean acidification (present-day temperature and −0.2 pH units), or (iv) combined future ocean (+2°C and −0.2 pH units). This study was conducted over 1 year, providing the corals with time to acclimatize to the treatments and helping to ensure that the measured calcification responses were a result of heritable variation among them rather than differences in their short-term histories. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-10-15.
DOI: 10.1594/pangaea.872533
title: Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-02-22.
DOI: 10.15468/dl.47vr6n
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sergestidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 93 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015871-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.883475
title: Seawater carbonate chemistry, N/C and P/C biomass ratios, Polyunsaturated fatty acids of Rhodomonas sp. and Phaeodactylum tricornutum

description: Marine phytoplankton is simultaneously affected by multiple environmental drivers. To-date integrative assessments of multiple combined effects are rare on the relationship between elemental stoichiometry and biochemicals in marine phytoplankton. We investigated responses of stoichiometric (N:C and P:C ratios) and fatty acid-based (polyunsaturated fatty acid, PUFA) indicators of nutritional quality to three N:P supply ratios (10:1, 24:1, and 63:1 mol/mol), three temperatures (12, 18, and 24°C) and two pCO2 levels (560 and 2400 µatm) in the marine phytoplankters Rhodomonas sp. and Phaeodactylum tricornutum. Overall, warming and nutrient deficiency showed dramatic effects, but increased pCO2 had modest effects on the two indicators of nutritional quality. Specifically, warming showed strong positive effects on N:C and P:C ratios in Rhodomonas sp. but negative effects on PUFAs in both species. The low N- and low P-media led to low contents of both nutrients but high contents of PUFAs in the biomass of Rhodomonas sp., while the response of P. tricornutum was more complex: N:C ratios were lowest at the intermediate N:P supply but P:C ratios responded negatively to P deficiency and positively to N deficiency. Large variations in the two indicators of nutritional quality can be attributed to species-specific physiological optima and interactions between the three manipulated variables. Our results suggest that stoichiometric and FA-based indicators of nutritional quality may change differentially in response to warming and nutrient deficiency in marine phytoplankton, highlighting the relevance of simultaneous considerations of the two indicators of nutritional quality, when assessing food web dynamics under future ocean scenarios.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-11-23.
description: Supplement to: Bi, Rong; Ismar, Stefanie M; Sommer, Ulrich; Zhao, Meixun (2017): Environmental dependence of the correlations between stoichiometric and fatty acid-based indicators of phytoplankton nutritional quality. Limnology and Oceanography, 62(1), 334-347
DOI: 10.1594/pangaea.914662
title: Seawater carbonate chemistry and calcification of Halimeda cuneata, photosynthetic rate of Halodule wrightii

description: The ultimate effect that ocean acidification (OA) and warming will have on the physiology of calcifying algae is still largely uncertain. Responses depend on the complex interactions between seawater chemistry, global/local stressors and species-specific physiologies. There is a significant gap regarding the effect that metabolic interactions between coexisting species may have on local seawater chemistry and the concurrent effect of OA. Here, we manipulated CO2 and temperature to evaluate the physiological responses of two common photoautotrophs from shallow tropical marine coastal ecosystems in Brazil: the calcifying alga Halimeda cuneata, and the seagrass Halodule wrightii. We tested whether or not seagrass presence can influence the calcification rate of a widespread and abundant species of Halimeda under OA and warming. Our results demonstrate that under elevated CO2, the high photosynthetic rates of H. wrightii contribute to raise H. cuneata calcification more than two-fold and thus we suggest that H. cuneata populations coexisting with H. wrightii may have a higher resilience to OA conditions. This conclusion supports the more general hypothesis that, in coastal and shallow reef environments, the metabolic interactions between calcifying and non-calcifying organisms are instrumental in providing refuge against OA effects and increasing the resilience of the more OA-susceptible species.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-02.
DOI: 10.1594/pangaea.875583
title: Seawater carbonate chemistry and germling growth rate, and male and female gametophyte sizes of kelps Macrocystis pyrifera and Undaria pinnatifida in laboratory experiment

description: Anthropogenic atmospheric emissions of CO2 are responsible for simultaneous ocean warming (OW) and ocean acidification (OA). These global events can have important impacts on marine fleshy macroalgae and coastal ecosystems. To understand the effects of OW and OA on the early life history stages of native (Macrocystis pyrifera) and invasive (Undaria pinnatifida) macroalgae, a multi-factorial experiment was performed to determine the independent and interactive effects of the drivers and the corresponding species-specific responses. Meiospores of M. pyrifera and U. pinnatifida were separately exposed to a 4 * 2 factorial design of seawater pH (pHT 7.20, extreme OA predicted for 2300; pHT 7.65, OA predicted for 2100; pHT 8.03, ambient pH; and pHT 8.40, pre-industrial pH) and temperature (12 °C, seasonal average temperature; and 16 °C, OW predicted for 2100). Over 15 days, different physiological parameters (i.e. meiospore germination, germling growth rate, gametophyte development and sex ratio) were measured. Reduced seawater pH and elevated temperature had independent and significant effects on developmental processes (germling growth rate, and male and female gametophyte sizes were independently greater under OA and OW conditions), but the interaction of the abiotic factors had no effect on any stage of meiospore development of either species. Despite some small differences between species (e.g. sex ratio), results of this experiment suggest that microscopic stages of the native M. pyrifera and the invasive U. pinnatifida will respond similarly to OA and OW.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-05-17.
description: Supplement to: Leal, Pablo P; Hurd, Catriona L; Fernández, Pamela A; Roleda, Michael Y (2016): Meiospore development of the kelps Macrocystis pyrifera and Undaria pinnatifida under ocean acidification and ocean warming: independent effects are more important than their interaction. Marine Biology, 164(1)
DOI: 10.1594/pangaea.721195
title: Seawater carbonate chemistry and processes during an experiment with coral reef, 2000

description: The concentration of CO2 in the atmosphere is projected to reach twice the preindustrial level by the middle of the 21st century. This increase will reduce the concentration of [CO3]2- of the surface ocean by 30% relative to the preindustrial level and will reduce the calcium carbonate saturation state of the surface ocean by an equal percentage. Using the large 2650 m3 coral reef mesocosm at the BIOSPHERE-2 facility near Tucson, Arizona, we investigated the effect of the projected changes in seawater carbonate chemistry on the calcification of coral reef organisms at the community scale. Our experimental design was to obtain a long (3.8 years) time series of the net calcification of the complete system and all relevant physical and chemical variables (temperature, salinity, light, nutrients, Ca2+,pCO2, TCO2, and total alkalinity). Periodic additions of NaHCO3, Na2CO3, and/or CaCl2 were made to change the calcium carbonate saturation state of the water. We found that there were consistent and reproducible changes in the rate of calcification in response to our manipulations of the saturation state. We show that the net community calcification rate responds to manipulations in the concentrations of both Ca2+ and [CO3]2- and that the rate is well described as a linear function of the ion concentration product, [Ca2+]0.69[[CO3]2-]. This suggests that saturation state or a closely related quantity is a primary environmental factor that influences calcification on coral reefs at the ecosystem level. We compare the sensitivity of calcification to short-term (days) and long-term (months to years) changes in saturation state and found that the response was not significantly different. This indicates that coral reef organisms do not seem to be able to acclimate to changing saturation state. The predicted decrease in coral reef calcification between the years 1880 and 2065 A.D. based on our long-term results is 40%. Previous small-scale, short-term organismal studies predicted a calcification reduction of 14-30%. This much longer, community-scale study suggests that the impact on coral reefs may be greater than previously suspected. In the next century coral reefs will be less able to cope with rising sea level and other anthropogenic stresses.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Langdon, Chris; Takahashi, Taro; Sweeney, Colm; Chipman, D W; Goddard, J G; Marubini, Francesca; Aceves, Heather; Barnett, Heidi; Atkinson, M J (2000): Effect of calcium carbonate saturation state on the calcification rate of an experimental coral reef. Global Biogeochemical Cycles, 14(4), 639-354