cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8js8vp0/1
title: phylogenetic functional response

description: In the functional response (FR) experiment, five plant species that share an evolutionary history with P. canaliculata were chosen: Alternanthera philoxeroides (alligator weed), Eichhornia crassipes (water hyacinth), Ipomoea batatas (sweet potato), Myriophyllum aquaticum (parrot feather) and Pistia stratiotes (water lettuce). In addition, we chose five plant species with which P. canaliculata has had no evolutionary exposure: Apium graveolens (Chinese celery), Colocasia esculenta (taro), Ipomoea aquatica (water spinach), Hydrocotyle vulgaris (pennywort) and Lactuca sativa (lettuce).We collected all host plant species on the day of the experiment to ensure their freshness. Each of these species is common in wetlands and agricultural areas of South China and the snail was observed to consume all these plants to some degree in the laboratory.Then we measured the plant consumption by apple snail along 7 plant biomass gradients at 5 temperature gradients.
DOI: 10.5061/dryad.8js8vp0/2
title: The phylogeny of 10 species used in this study

description: To verify the phylogenetic structure of these species, for each of the 10 species we searched GenBank for matK gene sequences, which are commonly used in published plant phylogenies (Cadotte 2013). We included a gymnosperm Platycladus orientalis as the out-group species. Sequences were aligned with ClustalW (Thompson et al. 2002). The Bayesian phylogeny was reconstructed using BEAST version v1.8.2 (Drummond et al. 2012). The Bayesian MCMC chain was run for one million generations, and convergence was checked using Tracer version v1.6.0 (http://beast.bio.ed.ac.uk/Tracer). The maximum clade credibility tree was used to quantify phylogenetic pattern by TreeAnnotator version v1.8.2 (Drummond et al. 2012)
DOI: 10.5061/dryad.8sf5v66/1
title: Avian community data

description: Matrix corresponding to sites and avian species for the aggregation schemes AS2x2 and AS3x3. A total of 73 avian species were recorded in 1-km spatial transects. The number of spatial replicates (J) for each site where the species was observed and the different covariates for each site: the percentage of forest cover (forest), the annual mean temperature (temp) and the anual precipitation (prec).
DOI: 10.5061/dryad.911161j/1
title: Wasmannia affinis_nova_036a_data_part 1

description: Part 1 of volumetric micro-CT scanning dataset for Wasmannia affinis Santschi, 1929 worker (nova_036a) in TIFF format (300 slices)
DOI: 10.5061/dryad.911161j/2
title: Wasmannia affinis_nova_036a_part 2

description: Part 2 of volumetric micro-CT scanning dataset for Wasmannia affinis Santschi, 1929 worker (nova_036a) in TIFF format (300 slices)
DOI: 10.5061/dryad.911161j/3
title: Wasmannia affinis_nova_036a_part 3

description: Part 3 of volumetric micro-CT scanning dataset for Wasmannia affinis Santschi, 1929 worker (nova_036a) in TIFF format (300 slices)
DOI: 10.5061/dryad.911161j/4
title: Wasmannia affinis_nova_036a_part 4

description: Part 4 of volumetric micro-CT scanning dataset for Wasmannia affinis Santschi, 1929 worker (nova_036a) in TIFF format (300 slices)
DOI: 10.5061/dryad.911161j/5
title: Wasmannia affinis_nova_036a_part 5

description: Part 5 of volumetric micro-CT scanning dataset for Wasmannia affinis Santschi, 1929 worker (nova_036a) in TIFF format (328 slices)
DOI: 10.5061/dryad.9rv260r/1
title: miRNA microarray within hippocampus region of PSEN12 double knockout mice

description: The wild type and PSEN dKO mice were sacrificed at the ages of 7 and 18 months. The complete mouse brain structure was removed and immediately prepared on dry ice. The hippocampus was dissected and stored at −80°C until RNA isolation. Total RNA was isolated using the Trizol reagent. MiRNA expression profiling was performed using Affymetrix Gene Chip miRNA 4.0 arrays (Affymetrix, Santa Clara, CA, USA) containing 4500 mouse mature miRNAs in the miRBase.
DOI: 10.5061/dryad.b9v801n/1
title: genotype_data

description: Nine nuclear microsatellites (HJssr001, HJssr011, HJssr013, HJssr014, HJssr022, HJssr023, HJssr026, HJssr028, and Hjssr029) for Haemadipsa japonica and 798 individuals, including source location information and genotype data. This is the input file used for the Structure analysis.
DOI: 10.5061/dryad.dg03kv8/1
title: JBi-18-0362-suppinfo

description: Datasets used in the paper: The distribution of plants and seed dispersers in response to habitat fragmentation in an artificial island archipelago
DOI: 10.5061/dryad.h550gp2/1
title: Reed_BioLet_Data_20181210

description: Data on growth of clown anemonefish Amphiprion percula collected in the lab at Boston University in 2016 and 2017. Two years of data, reflecting two slightly different experiments, on two separate pages. 'Final length' is the length of the fish at the end of the experiment (mm); 'Individual' is the type of individual at the end of the experiment (P1 = pair-rank-1; P2 = pair-rank-2; S = solitary); 'Treatment' is the experimental treatment (P = paired; S = solitary); 'Replicate' is the replicate ID: in both years the fish were housed in size-matched replicates at the start of the experiment.
DOI: 10.5061/dryad.ns790j4/2
title: Teske_gINLAnd_MinTemp

description: SNPs under thermal selection (minimum temperature data)
DOI: 10.5061/dryad.ns790j4/3
title: Teske_gINLAnd_MaxTemp

description: SNPs under thermal selection (maximum temperature data)
DOI: 10.5061/dryad.p0544hn/1
title: Dataframes used for analyses in the paper

description: The first file includes data related to longevity and reproductive success in early life of females that survived beyond the onset of actuarial senescence. This data was used to produce Table 2 and Figure 1. The second file includes data related to longevity and weaning success in early life of females that survived beyond the onset of actuarial senescence. This data was used to produce Table 3 and Figure 1. The third file includes data related to longevity and lifetime reproductive success of adult females. This data was used to produce Table 4 and Figure 2. The fourth file includes data related to longevity and lifetime weaning success of adult females. This data was used to produce Table 5 and Figure 2.
DOI: 10.5061/dryad.q6m40r0.2
title: Data from: Phytoplankton species richness along coastal and estuarine salinity continua
DOI: 10.5061/dryad.q6m40r0.2/1.2
title: Count table

description: A 4 columns (descriptors) x 478018 rows (records) data table of phytoplankton species specific counts. Column 1: sampleID [character] - unique ID code for each phytoplankton saample; Column 2: name [character] - valid taxonomic latin name of the taxon; Column 3: AphiaID [integer] - WORMS unique ID code for the taxon; Column 4: biomass [numeric] - biomass of the taxon in the particular sample (µg / L). The records are linked with the sample table by the sampleID code, and with the taxon table by the AphiaID code.
DOI: 10.5061/dryad.q6m40r0.2/2.2
title: Sample table

description: A 7 columns (descriptors) x 15640 rows (samples) data table, containing the meta data about each phytoplankton sample used in the analysis. Column 1: sampleID [character] - unique ID code for each sample; Column 1: date [character] - year and date when the sample was taken; Column 3: basin [character] - sample location, either bs (the Baltic Sea) or chesa (the Chesapeake Bay); Column 4: lon [numeric] - longitude coordinate (degrees); Column 5: lat [numeric] - latitude coordinate (degrees); Column 6: Temp [numeric] - water temperature (°C) of the sample; Column 7: Salin [numeric] - salinity of the sample. The records are linked wiht the count table by the sample ID code. UTF-8 text file with LF line endings.
DOI: 10.5061/dryad.rh807jp/1
title: Seedling and seedbank data

description: Environmental characterization, seedling count data, seedbank size and germination data
DOI: 10.5061/dryad.s76h0s6/1
title: Data

description: This file contains the data used for analysis of phenotype induced by RNAi. Please read the README file for more details.
DOI: 10.5061/dryad.s76h0s6/2
title: R_Script

description: This file contains the script used on Rstudio for data analysis. Please read the README file for more information.
DOI: 10.5061/dryad.sb4kr01/1
title: Coarelli et al., Table 4

description: Table 4. New SPG7 variants found in the analyzed cohort.
DOI: 10.5061/dryad.t7r6kg5/2
title: Phenology_data

description: Table of phenology data collected from herbarium specimens. This file contains information on ther Herbarium, species, collector, collection number, locality, date, and phenological stage. In this file the phenology is scored: 0 = leaves, small flower buds, 1 = flower buds with expanded inflorescences, 2 = flowering, 3 = past flowering, small fruits visible, 4 = young fruits, 5 = mature fruits, 6 = fruits fallen off, 7 = no leaves or fruits (winter), NA = infertile.
DOI: 10.5061/dryad.t7r6kg5/3
title: core_lentago-c88-d6-min24_outfiles

description: All ipyrad outfiles for the entire V. lentago clade + outgroups with all loci shared across at least 24 individuals.
DOI: 10.5061/dryad.t7r6kg5/4
title: core_lentago-c88-d6-min49_outfiles

description: All ipyrad outfiles for the entire V. lentago clade + outgroups with all loci shared across at least 49 individuals.
DOI: 10.5061/dryad.t7r6kg5/5
title: core_lentago-c88-d6-min73_outfiles

description: All ipyrad outfiles for the entire V. lentago clade + outgroups with all loci shared across at least 73 individuals.
DOI: 10.5061/dryad.t7r6kg5/6
title: core_lentago_combined_floral_trait_data

description: Morphological trait data for the core Lentago species.
DOI: 10.5061/dryad.t7r6kg5/7
title: cleaned_occurrences_lentago_clade

description: Table of occurrence information compiled from multiple sources and cleaned according to the processes described in our manuscript.
DOI: 10.5061/dryad.v3g896t/1
title: The Chla+b (mg·l-1) average concentration

description: The Chla+b (mg·l-1) average concentration at each time point (0h, 1h, 3h and 6h) which leaves were exposed to UV-C in different genotypes.
DOI: 10.17632/5tbc2g9tvg.1
title: Data for: Impact of Sea-level and facies changes on reservoir characteristics of the Middle Jurassic Rocks at Ras El Abd, Gulf of Suez, Egypt

description: The petrographical analysis, depending on the microscopic investigation of eighteen representative samples covered the studied Ras El Abd section. This analysis was used to clarify the reservoir mineralogy and diagenetic processes affected on their quality. All thin sections were impregnated with blue dye is to facilitate the description of porosity types. For the petrophysical analyses, the samples were cut into plugs of around 2.5 cm diameter and a length reaches to 3.5 cm. Acoustic velocities (P and S - waves) were measured at surrounding conditions on cylinder-shaped samples at 500 kHz (ultrasonic frequencies) by using of Inspection Technologies (USLT 2000) instrument. The velocity measurements were applied on the dry and wholly water flooded samples.
DOI: 10.5061/dryad.150v8g3/1
title: CCE data with repeat exposures

description: Data from three experiments:  1. 12 subjects with five consecutive days of CCE testing. 2. 8 subjects with five consecutive days of CCE testing plus a 6th test that occurred 6 months later. 3. 18 subjects with two consecutive days of CCE testing, half with 8 block protocol and the other half with a 4 block protocol.   Summary and raw data are included.
DOI: 10.5061/dryad.2ck7120/55
title: DNA18_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA18
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/56
title: DNA18_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA18
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/57
title: DNA19_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA19
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/58
title: DNA19_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA19
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/59
title: DNA20_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA20
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/60
title: DNA20_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA20
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/61
title: DNA20_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA20
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/62
title: DNA21_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA21
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/63
title: DNA21_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA21
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/84
title: DNA19_MFZR.tar

description: Fastq file with raw data of Illumina reads Plate: DNA19 Marker: MFZR Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2qh4k34/3
title: WGS_fastq_Erythrose

description: Fastq files obtained from whole genome sequencing of mutants growing on erythrose as sole carbon source. Each mutant was paired end sequenced using Illumina's Miseq. Thus there are two fastq files per mutant. Each file name has a DA number designating the strain, and description of the strain can be obtained from the supplementary table 3 of the manuscript.
DOI: 10.5061/dryad.2qh4k34/4
title: WGS_fastq_D-adonitol

description: Fastq files obtained from whole genome sequencing of mutants growing on D-adonitol as sole carbon source. Each mutant was paired end sequenced using Illumina's Miseq. Thus there are two fastq files per mutant. Each file name has a DA number designating the strain, and description of the strain can be obtained from the supplementary table 3 of the manuscript.
DOI: 10.5061/dryad.2ss22k3/1
title: Supplemental Tables_01 02 19
DOI: 10.5061/dryad.3k5c0sh/10
title: Nexus file for 74,955 SNPs from 94 populations.

description: Data are 74,955 SNPs from 94 populations of Eurycea. For populations represented by more than one sampled individual, only those SNPs that are fixed within the population are used to create the exemplar sequence using the 'populations' program in Stacks. Details needed to reproduce the RAxML analysis are provided in the README file.
DOI: 10.5061/dryad.3k5c0sh/11
title: Barcode files for demultiplexing raw reads.

description: A zip archive of seven text files containing sample names and associated barcodes for demultiplexing raw reads from pooled samples. See the attached README file for the steps taken to demultiplex in Stacks and ipyrad and produce assemblies for downstream analyses.
DOI: 10.5061/dryad.3k5c0sh/4
title: Structure input file for the southeastern clade.

description: A Structure data file consisting of 73 individuals from the southeastern clade (excluding Typhlomolge) genotyped at 146 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.3k5c0sh/5
title: Structure input file for the southwestern clade.

description: A Structure data file consisting of 82 individuals from the southwestern clade genotyped at 604 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.3k5c0sh/6
title: Structure input file for E. sp. 2.

description: A Structure data file consisting of 36 individual E. sp. 2 samples genotyped at 604 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.3k5c0sh/7
title: Structure input file for E. troglodytes and E. sp. 3.

description: A Structure data file consisting of 46 E. troglodytes and E. sp. 3 samples genotyped at 604 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.3k5c0sh/8
title: Structure input file for E. troglodytes.

description: A Structure data file consisting of 26 individual E. troglodytes genotyped at 604 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.3k5c0sh/9
title: Structure input file for E. sp. 3.

description: A Structure data file consisting of 20 E. sp. 3 samples genotyped at 604 loci. See README file for MAINPARAMS and EXTRAPARAMS settings.
DOI: 10.5061/dryad.4nn33b2.1
title: Data from: Globally consistent impact of tropical cyclones on the structure of tropical and subtropical forests
DOI: 10.5061/dryad.4nn33b2.2
title: Data from: Globally consistent impact of tropical cyclones on the structure of tropical and subtropical forests
DOI: 10.5061/dryad.4nn33b2.2/1.2
title: Dataset

description: Raw data including location of the plots (longitude, latitude and type of forest), forest structural features (stem density, basal area and canopy height) climatic variables (potential evapotranspiration, mean annual precipitation, mean annual temperature), human footprint index and cyclone regime variables (cyclone frequency and power dissipation index). Includes reference list.
DOI: 10.5061/dryad.4nn33b2.2/2.2
title: Dataset - csv

description: Raw data in csv format including location of the plots (longitude, latitude and type of forest), forest structural features (stem density, basal area and canopy height) climatic variables (potential evapotranspiration, mean annual precipitation, mean annual temperature), human footprint index and cyclone regime variables (cyclone frequency and power dissipation index).
DOI: 10.5061/dryad.52213gc/1
title: alignment and phylogenic trees used in the paper
DOI: 10.5061/dryad.5q66f0n/1
title: plant functional traits and relative aboveground biomass

description: This sheet contains traits and relative aboveground biomass of each species in three grasslands over two years.
DOI: 10.5061/dryad.6jc8jd1/1
title: Tephritid captures in California

description: Detection records of alien tephritids in California from 1950-2017. The dataset includes the following variables: Species (scientific name of detected tephritids in California). Common Name (the common name of detected tephritids in California). Date (the detection date as month/day/year). City (location information of detected tephritids in California). Total (the detected number of alien tephritids in California). 
Latitude (detected location, a geographic coordinate that specifies the north–south position of a point on the Earth's surface). Longitude (detected location, a geographic coordinate that specifies the east–west position of a point on the Earth's surface). 
Please NOTE: These data are also available from Ecology in CSV format. They have been uploaded as supporting information for the corresponding publication.
DOI: 10.5061/dryad.6n5h0pb/1
title: Experiments raw data
DOI: 10.5061/dryad.6v52770/1
title: Wilson et al. 2019 BehavEco
DOI: 10.5061/dryad.770nj18/10
title: Toxicol Sciences_Kim H et al_Supple Fig4

description: Figure S4. High dose BPA does not significantly promote the tumor growth in DCIS xenograft models.
DOI: 10.5061/dryad.770nj18/11
title: Fig1_RAW DATA_READ COUNT

description: Figure 1. Differentially expressed genes (DEGs) clusters and Gene Ontology (GO) categorization between BPA-exposed DCIS.com cells and control. RAW data in RNA-seq analysis.
DOI: 10.5061/dryad.770nj18/9
title: Toxicol Sciences_Kim H et al_Supple Fig3

description: Figure S3. Low dose BPA promotes the migration capacities of J774A.1 cells and upregulates NOS2, Arg-1 and CD206.
DOI: 10.5061/dryad.791n66r/4
title: Survival data of wasps in generation 40

description: This excel file gives time until death in days after emergence, from individuals of the selection lines, unselected control lines  from the AcymCx and HVRx_2 strains. These wasps were either naive or trained (=conditioned). This dataset supports fig 7.
DOI: 10.5061/dryad.7m41jd8/1
title: Long term nestling body size data

description: 10-16 day old tree swallow nestlings body size measurements from 1977-2017. Column names are as follows: nestlingID = Unique ring Canadian Wildlife Service number identifying individual nestlings, nestID=Unique code for each nest, year=	year, age=number of days since hatching (e.g., on the hatch date, age=0) in days, hatchdate=date most of the nestlings hatched (tree swallows typically hatch synchronously)	(Julian date), hatchsize=number of hatched nestlings, fledgedate=date most of the nestlings fledged or the nest failed (Julian date), 
fledgesize	=number of nestlings that fledged, mass=nestling body mas (g), tarsus=nestling tarsus length (mm), ninprim= nestling wing chord	(mm), year2= decades since 1977 (the first year nestlings were measured)
DOI: 10.5061/dryad.7m41jd8/2
title: Long term adult body size data

description: Adult body size records from 1983-2017. Column headings are as follows: band=unique ring Canadian Wildlife Service number identifying individual birds, year=year	, sex=male (M) or female (F), age=males are listed as AHY (after hatch year) when caught as adults initially. Females may be aged by plumage as SY (second year, a one-year-old bird) or ASY (after second year, and 2+ years old). Birds caught subsequently are listed based on their age as first capture (e.g. A3Y (after third year), 4Y (four years old), mass=adult’s body mass (g), tarsus=adult’s tarsus length (mm), wingChord=adult’s wing chord (mm), nestID=nest box identifier, not unique, laydate=date the first egg was laid	 (Julian date), incdate=date the last egg was laid, when incubation begins (julian date), hatchdate=date most of the nestlings hatched (tree swallows typically hatch synchronously) (Julian date), fledgedate=date most of the nestlings fledged or the nest failed 	(Julian date), dateMeas2=date mass, tarsus, and wing chord measurements were taken (Julian date), year2=years since 1975, when adults were first captured, diff=days between when eggs were first laid and when the bird was measured (dateMeas2-laydate), Period=Was the nest in the incubation stage or the nestling stage?