cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vv469/4
title: imputed_seq_results_5loci-LY.txt

description: Associations for 1Mbp windows of imputed whole genome sequence around 5 GWAS peaks for lactose yield, using GLS to account for pedigree.
DOI: 10.5061/dryad.vv469/5
title: eQTL for genes at lactose QTL peaks

description: 1Mbp cis-eQTL from imputed whole-genome sequence for 313 genes arounds QTL peaks for lactose phenotypes. Calculated using GLS to account for pedigree.
DOI: 10.5061/dryad.vv469/6
title: imputed-seq-genotypes-Chr1.153640000-154640000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr1:153.96 LC QTL, for 357 animals.
DOI: 10.17632/564rt8s835.1
title: Data for: STEMI in coronary bridging: An unusual scenario
DOI: 10.17632/nmjx97ggd6.1
title: Data for: Detection of newly discovered KIs virus in India
DOI: 10.17632/nmjx97ggd6.2
title: Data for: Detection of newly discovered KIs virus in India
DOI: 10.17632/zfmg7rxtr6.1
title: Data for: A Heuristic Task Scheduling Algorithm Based on Server Power Efficiency Model in Cloud Environments

description: Experiment source code
DOI: 10.5061/dryad.0645r/1
title: Fish species occupancy File A1

description: Species detections by survey for 13 Conasauga River sites (1995 – 2014) and 10 Etowah River sites (2001-2014). Data fields are: species (Taxon); site name (Site.no); survey year and replicate number written as xxxx.y, where xxxx is year and y is replicate number (1-3). A value of “1” is shown where a species was detected in a survey; “0” indicates the species was not detected in the survey. Blanks indicate no survey data are available for a given site, year, and replicate combination.
DOI: 10.5061/dryad.0645r/2
title: Fish species occupancy File A2

description: Just Another Gibbs Sampler (JAGS) code as implemented in R using the package r-jags to fit multi-taxa dynamic occupancy models to detection/non-detection data for the Conasauga and Etowah river study sites. The terms “ntaxa”, “nsite”, and “nyear” refer to the number of taxa, sites, and years, respectively, included in the data set; nrep is the maximum number of replicate, within-year surveys across all sites and years. Code is shown for the basic (no covariates) model, with lines added and marked with “#” to show how random-slopes models were fit for streamflow covariates.
DOI: 10.5061/dryad.0645r/3
title: Fish species occupancy Table A1

description: Detection probabilities for 26 fish taxa at 13 sites in the Conasauga River mainstem sampled multiple years, 1995-2014, and for 28 fish taxa at 10 sites in the Etowah River mainstem sampled multiple years, 2001-2014. Values are posterior means (and 95% credible intervals) estimated using a multi-taxa, dynamic occupancy model applied to detection data for each river.
DOI: 10.5061/dryad.145g7/1
title: Genotype file

description: File containing the genetic profile as well as the geographic origin of each Belgian and European deer
DOI: 10.5061/dryad.17889/1
title: Performance of pigmented and anthocyanin-deficient Mimulus guttatus plants in a common garden

description: Measures of vigour and seed set made in an experimental common garden site in Syracuse.
DOI: 10.5061/dryad.17889/2
title: Performance of pigmented and anthocyanin-deficient Mimulus guttatus plants in a drought experiment
DOI: 10.5061/dryad.17889/3
title: Performance of pigmented and anthocyanin-deficient Mimulus guttatus plants in UV-controlled growth chambers
DOI: 10.5061/dryad.33hc6/1
title: Subject Data

description: File contains individual subject time series of sacral marker position data, captured at 100 Hz and reported in mm. Those time series for Experiments 1 and 2 are organized under separate tabs. Each tab is organized by headers representing different experimental conditions. Under each condition header, X, Y, and Z correspond to the medio-lateral, anterior-posterior, and vertical directions, respectively.
DOI: 10.5061/dryad.36n7v/6
title: 9mA_Heater_Currrent_fs_mode_neffr_0

description: Effective and group index for 9mA heater current
DOI: 10.5061/dryad.3g591/1
title: Efficacy Manuscript Data

description: Data used in paper analysis
DOI: 10.5061/dryad.3g591/2
title: Supplementary materials - Tables

description: Tables used in paper
DOI: 10.5061/dryad.3j218/34
title: GenotypeVCFs_noBSQR_filtered_aDNA_only.vcf.gz.tab_with_baboon_and_human

description: Autosomal RADseq alignment with human, baboon,and rhesus outgroups
DOI: 10.5061/dryad.3j218/35
title: GenotypeVCFs_noBSQR_filtered_xDNA_only_genotyped_based_on_depth_with_baboon_and_human

description: chrX RADseq alignment with human, baboon,and rhesus outgroups
DOI: 10.5061/dryad.3j218/36
title: README

description: README file; this is a summary of the files in this accession.
DOI: 10.5061/dryad.41ng6/1
title: Luscinia svecica mRNA 454 reads

description: A file with 454 FLX reads, demultiplexed and converted to FASTQ with Roche sfffile tool.
DOI: 10.5061/dryad.602hq/1
title: Brooker et al. 2017. Behav Ecol. Data

description: All data from Brooker et al. 2017. Including 1) wild crab survey data, 2) experiment 1 data (pompom size and placement), and 3) experiment 2 data (pompom use with/ without shelter).
DOI: 10.5061/dryad.761k6/1
title: Coldsnow et al._Circadian_Raw

description: CT values from qPCR for the 24-hour and 48-hour experiment.
DOI: 10.5061/dryad.8dm60/1
title: Life history traits
DOI: 10.5061/dryad.940m2/1
title: Phylo_morpho_cane_toads

description: Morphological data used in phylogenetic analyses.
DOI: 10.5061/dryad.9mg5c/1
title: Bee Measurements

description: Here we have measured the size of the mason bees that were collected in the strawberry plots
DOI: 10.5061/dryad.9mg5c/2
title: JAEData.NestHomeColonization

description: This file contains data on mason bee nest home colonization on berry farms
DOI: 10.5061/dryad.9mg5c/3
title: JAEData.NestHomeParasitization

description: This file addresses the number of holes in mason bee homes that were colonized by mason bees (eggs laid) but then damaged by parasitizing predatory species like wasps.
DOI: 10.5061/dryad.9mg5c/4
title: JAEData.StrawberryData

description: This file contains measurements of berries on nine farm plots where half of each plot is a treatment (mason bee addition) and half is a control (no bee addition)
DOI: 10.5061/dryad.bc1gb/1
title: Data and codes in R for all figures in Malerba et al. 2017 Ecology Letters

description: Instructions - 
The main file is called "Main script.R". Open it with statistical software R. Within the script file: (1) check that all packages are installed in the computer (otherwise install before running the script), and (2) set the directory where the "Main script.R" file is in the computer. After having done that, everything else should work by simply running the file in R. The script will read all data, calculate the statistics, plot the images, and save the images in the same folder where the Main script file is. The file is designed to run in Mac computers.

Also added in the folder are the final version of all figures after layout melioration using Adobe Illustrator and an example of the microscopy photos for the lineages (taken in date 11 Sep 2017).
DOI: 10.5061/dryad.cs635/1
title: Full Grusz 2014 trnGR alignment

description: Full Grusz (2014) trnGR alignment used for plastid phylogeny and divergence time estimation.
DOI: 10.5061/dryad.cs635/2
title: Trimmed (1 per species) Grusz (2014) trnGR alignment

description: Trimmed (1 per species) Grusz (2014) trnGR alignment used for plastid phylogeny and divergence time estimation.
DOI: 10.5061/dryad.cs635/3
title: Myriopteris gracilis clade trnGR alignment

description: Myriopteris gracilis clade trnGR alignment used for plastid phylogeny and divergence time estimation.
DOI: 10.5061/dryad.d8j34/1
title: Data for Cape buffalo social dynamics in a flood pulsed ecosystem

description: This data file contains 1. Distances &lt;1000m between dyads of collared buffalo; 2. Utilization Distribution Overlap Indices and number of fusion events; 3. Data matrices for seasonal DCG social network calculations; 4. Details on each fusion event; 5. Habitat types at fission and fusion locations; 6. Habitat composition in home ranges and home range overlap areas; 7. Distance to water from fission and fusion locations; 8. Distance to water from home ranges and home range overlap areas
DOI: 10.5061/dryad.dc883/1
title: Spillover data into both coffee plantations and pastures

description: These are the raw data regarding avian cross-habitat spillover into agricultural matrices.
DOI: 10.5061/dryad.df564/10
title: NOBO_Future_Thresholds

description: A ZIP file of 32 discrete TIFF layers indicating the future areas of environmental suitability for northern bobwhite based on Maxent modeling.
DOI: 10.5061/dryad.df564/11
title: SCQU_Current_Thresholds_PLOS

description: A ZIP file of 32 discrete TIFF layers indicating the current areas of environmental suitability for scaled quail based on Maxent modeling.
DOI: 10.5061/dryad.df564/12
title: SCQU_Future_Thresholds_PLOS

description: A ZIP file of 32 discrete TIFF layers indicating the future areas of environmental suitability for scaled quail based on Maxent modeling.
DOI: 10.5061/dryad.df564/13
title: CAQU_MPM

description: Model performance metrics (AUC, test omission, and standardized test omission) for traditional (correlation/variable contribution [T]), biological (B), and five random (R1-R5) variable suites used to model the climatic niche of the California quail in Maxent. Ecological niche models were estimated across 100 replicates for each variable suite.
DOI: 10.5061/dryad.df564/14
title: GAQU_MPM

description: Model performance metrics (AUC, test omission, and standardized test omission) for traditional (correlation/variable contribution [T]), biological (B), and five random (R1-R5) variable suites used to model the climatic niche of the Gambel's quail in Maxent. Ecological niche models were estimated across 100 replicates for each variable suite.
DOI: 10.5061/dryad.df564/6
title: MOUQ_Future_Thresholds_PLOS

description: A ZIP file of 32 discrete TIFF layers indicating the future areas of environmental suitability for mountain quail based on Maxent modeling.
DOI: 10.5061/dryad.df564/7
title: CAQU_Current_Thresholds_PLOS

description: A ZIP file of 32 discrete TIFF layers indicating the current areas of environmental suitability for California quail based on Maxent modeling.
DOI: 10.5061/dryad.df564/8
title: CAQU_Future_Thresholds_PLOS

description: A ZIP file of 32 discrete TIFF layers indicating the future areas of environmental suitability for California quail based on Maxent modeling.
DOI: 10.5061/dryad.df564/9
title: NOBO_Current_Thresholds

description: A ZIP file of 32 discrete TIFF layers indicating the current areas of environmental suitability for northern bobwhite based on Maxent modeling.
DOI: 10.5061/dryad.h9r01/1
title: MicrosatData

description: CSV file containing microsatellite genotype data for Solidago canadensis in Switzerland. Refer to README file for more details.
DOI: 10.5061/dryad.h9r01/2
title: ClimateData

description: CSV file containing environmental data for the experimental common garden plots and natural populations of Solidago canadensis in Switzerland. Refer to README file for more details.
DOI: 10.5061/dryad.j6q05/1
title: Jenouvrier_et_al_2017_JAE

description: See Supplementary material and section 7: Other data available on Dryad, for a detailed description of the files.
DOI: 10.5061/dryad.k17g2/1
title: Raw point count data

description: The file includes the sampling date, observer, trial start time, point number (i.e. replicate), playback treatment (including species and number of individuals in the playback), trial stage, time of detection (min, sec), responding species, individual,  distance from speaker, and vocalization type.
DOI: 10.5061/dryad.kc412/1
title: Density of zooplankton
DOI: 10.5061/dryad.kc412/2
title: Phenotypic differences between groups
DOI: 10.5061/dryad.kc412/3
title: File for path analysis
DOI: 10.5061/dryad.kk4qn/1
title: Ihle_data
DOI: 10.5061/dryad.kn8d2/19
title: Promiscuity_L3_F100M100_Autosomal_100Iterations

description: Autosomal distance matrices for promiscuity (L3) simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/20
title: Promiscuity_L3_F100M100_mtDNA_100Iterations

description: mtDNA distance matrices for promiscuity (L3) simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/21
title: Promiscuity_L3_F100M100_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for promiscuity (L3) simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/22
title: Promiscuity_L3_F100M500_Autosomal_100Iterations

description: Autosomal distance matrices for promiscuity (L3) simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/23
title: Promiscuity_L3_F100M500_mtDNA_100Iterations

description: mtDNA distance matrices for promiscuity (L3) simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/24
title: Promiscuity_L3_F100M500_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for promiscuity (L3) simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/25
title: Promiscuity_L3_F500M500_Autosomal_100Iterations

description: Autosomal distance matrices for promiscuity (L3) simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/26
title: Promiscuity_L3_F500M500_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for promiscuity (L3) simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.r4ps0/1
title: Early Life History Trait Data

description: Includes data related to early life history traits, egg diameter, adult female length, and phenotypic divergence rates. A full description of the data files and variables can be found in the associated README file.
DOI: 10.5061/dryad.rd24d/2
title: DataRaw_Cornec_etal_BoomingFar
DOI: 10.5061/dryad.rg15p/2
title: Phenotype and genotypes for pop sample_nuclear markers_table

description: Excel table with two morphological traits and genotypes at five nuclear loci provided for 29 tree weta (Hemideina crassidens) collected from the same location
DOI: 10.5061/dryad.rg15p/3
title: Hemideina_crassidens_mtDNAgenomes.fasta

description: Whole mitochondrial genome sequences from two tree weta (Hemideina crassidens) representing two clades observed within a single population sample
DOI: 10.5061/dryad.s074j/1
title: data_adult_yearling

description: This dataset described the physiological responses to water treatment in adults and yearlings. It also includes the data on fitness estimates (annual growth rate, survival rate and reproduction the next year).
DOI: 10.5061/dryad.s074j/2
title: data_juvenile

description: This dataset includes juvenile characteristics at birth and after few weeks during september recapture (early body growth rate).
DOI: 10.5061/dryad.sf33k/1
title: Datasheets

description: The zipped folder contains 9 csv files used for data analysis of tick counts. ALL_ALL refers to counts of all tick species for all treatments (a subset of five months). ALL_LC refers to counts of all tick species for Total exclosures vs. Control plots. RHPR_ALL and RHPR_LC are data for Rhipicephalus praetextatus for all treatments and Total vs. Control plots, respectively. RHPU_ALL and RHPU_LC are data for Rhipicephalus pulchellus. RHPV_ALL and RHPV_LC are data for Rhipicephalus pravus. Pathogens_CB_R contain data on Coxiella burnetii and Rickettsia pathogen infection in ticks. Column headers are Period: The month that ticks were collected, starting from October 2013.  Level: The geographic location of the exclosure treatment. 1 = Southern, mesic region, 2 = Central, intermediate region, 3 = North, arid region. Replicate: Numbered 1-9, the identity of replicated plot treatments. Treatment: The type of exclosure - LMH = Total exclosure, CONT = control, MESO = exclusion of all herbivores &gt;15kg, MEGA = exclusion of elephant and giraffe. Rain = Mean annual rainfall at each level (mm/year).
DOI: 10.5061/dryad.t5pr5.1
title: Data from: Women's emotional and sexual attraction to men across the menstrual cycle
DOI: 10.5061/dryad.t5pr5.1/1.1
title: Womens' daily reports of emotional and sexual attraction towards partners and extra-pair men.

description: Data used for mixed models.
DOI: 10.5061/dryad.t5pr5.1/2.1
title: Womens' reports of emotional and sexual attraction towards partners and extra-pair men in two phases.

description: Data used for repeated measure ANCOVA.
DOI: 10.5061/dryad.t5pr5.1/3.1
title: Womens' reports of emotional and sexual attraction towards partners and extra-pair men in five phases.

description: Data used for repeated measure ANCOVA.
DOI: 10.5061/dryad.t5pr5.2/3.2
title: Womens' reports of emotional and sexual attraction towards partners and extra-pair men in five phases.

description: Data used for repeated measure ANCOVA.
DOI: 10.5061/dryad.v1k54/19
title: 19_20160822_DUP_LB_temp

description: Response of ∆rsbP ∆rsbU cells. Representative MTC1930 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. The cells are kept in LB with no medium switch to assess whether there is any σB activation in the absence of both known activating phosphatases. This experiment corresponds to Figure S10.
DOI: 10.5061/dryad.vq8h7/1
title: Weissflog_et_al._Herbivory_data

description: Field data collected across the Isthmus of Panama between May and August 2014 (rainy season). Herbivory is defined as the leaf area removed by insect herbivores. Herbivory was assessed on 3-5 leaves per individual plant and 3-18 saplings per plant species per field site. Leaves were undamaged at the beginning of the observation and measurements were taken after ~50 days exposure in the field.
DOI: 10.5061/dryad.vv469/10
title: imputed-seq-genotypes-Chr5.20640000-21640000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr5:21.14 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/11
title: imputed-seq-genotypes-Chr5.31060000-32060000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr5:31.56 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/12
title: imputed-seq-genotypes-Chr5.43660000-44660000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr5:44.16 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/13
title: imputed-seq-genotypes-Chr5.93440000-94440000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr5:93.94 LY QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/14
title: imputed-seq-genotypes-Chr6.37260000-38260000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr6:37.76 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/15
title: imputed-seq-genotypes-Chr6.88540000-89540000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr6:89.04 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/7
title: imputed-seq-genotypes-Chr2.127140000-128140000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr2:127.64 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/8
title: imputed-seq-genotypes-Chr3.15020000-16020000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr3:15.52 LC QTL, for 357 animals.
DOI: 10.5061/dryad.vv469/9
title: imputed-seq-genotypes-Chr3.53340000-54340000.vcf

description: Imputed genotypes for variants within 1Mbp of the Chr3:53.84 LC QTL, for 357 animals.
DOI: 10.5061/dryad.0645r/10
title: Fish species occupancy Figure A2

description: March-September hydrograph, 1982-2014, U.S. Geological Survey streamgage 02392000 Etowah River at Canton, highlighting low-flow years during the study period (red).
DOI: 10.5061/dryad.0645r/4
title: Fish species occupancy Table A2

description: Species-specific rarity values used as covariates in dynamic occupancy models for 26 fish taxa in the Conasauga River (1995-2014) and 28 taxa in the Etowah River, GA (2001-2014). Values are the proportion of all surveys having counts of individuals in which a species was represented by 1-4 individuals.
DOI: 10.5061/dryad.0645r/5
title: Fish species occupancy Table A3

description: Species-specific slope estimates in logit-regression models of persistence and colonization probabilities as functions of a variable representing low-flow frequency in dynamic occupancy models for 26 fish taxa at 13 sites in the Conasauga River (1995-2014). The low-flow variable was an annual count of days in March through September with daily average discharge less than the 10th percentile of the mean monthly flow based on the period-of-record for U.S. Geological Survey streamgage 02384500, Conasauga River near Eton GA. Prior to analysis, the flow variable was transformed by subtracting the mean and dividing by the standard deviation of the untransformed data. Species-specific slopes are on the logit scale and were calculated as the sum of the fixed-effect and the species-specific random effect for the slope relating low-flow days to persistence or colonization. The 2.5% and 97.5% values bracket the 95% credible interval for the slope estimate.