cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3908473_d7.v1
title: Additional file 4: Table S3. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Results for the longitudinal time since quitting analysis. The first sheet: Presents the sites statistically significant for TSQL category 1 or TSQL category 2. The columns “Sign. for TSQL category 1” and “Sign. for TSQL category 2” indicate whether the CpG site is significant longitudinally (reference category individuals who have never smoked) for TSQL category 1 (&gt;0–4 years since quitting smoking at the time of the follow-up) and for TSQL category 2 (5–14 years). In addition to the longitudinal coefficients and p-values (representing the rate of change of methylation between baseline and follow-up per year relative to never smokers), cross-sectional coefficients are also given (representing the methylation difference to never smokers at baseline). “Chromosome” is the chromosome of the CpG site and “Gene or region” is based on the annotation file provided by Illumina (HumanMethylation450 v1.2 Manifest File). The remaining sheets: Results for all 590 CpG sites for each TSQL category and for the time coefficient. (XLS 695 kb)
DOI: 10.6084/m9.figshare.c.3908473_d7
title: Additional file 4: Table S3. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Results for the longitudinal time since quitting analysis. The first sheet: Presents the sites statistically significant for TSQL category 1 or TSQL category 2. The columns “Sign. for TSQL category 1” and “Sign. for TSQL category 2” indicate whether the CpG site is significant longitudinally (reference category individuals who have never smoked) for TSQL category 1 (&gt;0–4 years since quitting smoking at the time of the follow-up) and for TSQL category 2 (5–14 years). In addition to the longitudinal coefficients and p-values (representing the rate of change of methylation between baseline and follow-up per year relative to never smokers), cross-sectional coefficients are also given (representing the methylation difference to never smokers at baseline). “Chromosome” is the chromosome of the CpG site and “Gene or region” is based on the annotation file provided by Illumina (HumanMethylation450 v1.2 Manifest File). The remaining sheets: Results for all 590 CpG sites for each TSQL category and for the time coefficient. (XLS 695 kb)
DOI: 10.6084/m9.figshare.c.3908473_d5.v1
title: Additional file 2: Table S2. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Statistically significant results of the baseline epigenome-wide association study (EWAS). Presented are all CpG sites significant at a Bonferroni-corrected threshold of P
DOI: 10.6084/m9.figshare.c.3908473_d5
title: Additional file 2: Table S2. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Statistically significant results of the baseline epigenome-wide association study (EWAS). Presented are all CpG sites significant at a Bonferroni-corrected threshold of P
DOI: 10.6084/m9.figshare.c.3908473_d4.v1
title: Additional file 1: Table S1. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Category descriptions for the time since quitting smoking analysis (TSQL categories). (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3908473_d4
title: Additional file 1: Table S1. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: Category descriptions for the time since quitting smoking analysis (TSQL categories). (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3908473_d3
title: Additional file 12: Table S8. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: All results for the model incorporating both intensity and duration of smoking. Intensity of smoking is given in average number of cigarettes per day, and duration of smoking is length of smoking habit in years. The EWAS coefficient presented represents the methylation difference between smokers and never smokers at baseline, based on only the baseline information. It is presented to show whether the effect directions of increased intensity or increased duration are consistent with the effect of smoking vs not smoking. “Chromosome” is the chromosome of the CpG site and “Gene or region” is based on the annotation file provided by Illumina (HumanMethylation450 v1.2 Manifest File). (XLS 132 kb)
DOI: 10.6084/m9.figshare.c.3908473_d3.v1
title: Additional file 12: Table S8. of The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers

description: All results for the model incorporating both intensity and duration of smoking. Intensity of smoking is given in average number of cigarettes per day, and duration of smoking is length of smoking habit in years. The EWAS coefficient presented represents the methylation difference between smokers and never smokers at baseline, based on only the baseline information. It is presented to show whether the effect directions of increased intensity or increased duration are consistent with the effect of smoking vs not smoking. “Chromosome” is the chromosome of the CpG site and “Gene or region” is based on the annotation file provided by Illumina (HumanMethylation450 v1.2 Manifest File). (XLS 132 kb)
DOI: 10.6084/m9.figshare.c.3905971_d1
title: MOESM1 of Prediction of microbeâ  disease association from the integration of neighbor and graph with collaborative recommendation model

description: Additional file 1: Table S1. We publicly released the predicted of microbes for each disease, which may offer valuable information and clues for biological experiments.
DOI: 10.15468/dl.escw54
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmaridae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 237 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036891-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3905956_d2
title: Additional file 2: of An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

description: DIP PPI data. (TXT 290Â kb)
DOI: 10.6084/m9.figshare.c.3905956_d2.v1
title: Additional file 2: of An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

description: DIP PPI data. (TXT 290Â kb)
DOI: 10.6084/m9.figshare.c.3905956_d1.v1
title: Additional file 1: of An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

description: GSE3431 gene expression data. (TXT 4397Â kb)
DOI: 10.6084/m9.figshare.c.3905956_d1
title: Additional file 1: of An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

description: GSE3431 gene expression data. (TXT 4397Â kb)
DOI: 10.6084/m9.figshare.28035431
title: SOR TikTok Data Set

description: Dataset for SORTikTok Project
DOI: 10.6084/m9.figshare.c.3903658_d4.v1
title: Additional file 4: Table S4. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: Candidate genes detected in QTL intervals from nine populations, with their respective homolog in A. thaliana. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3903658_d4
title: Additional file 4: Table S4. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: Candidate genes detected in QTL intervals from nine populations, with their respective homolog in A. thaliana. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3903658_d3.v1
title: Additional file 3: Table S3. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: Overlapping QTLs for FA and OC in nine populations, mapped to B. napus â  Darmor-bzhâ   reference genome v4.1. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3903658_d3
title: Additional file 3: Table S3. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: Overlapping QTLs for FA and OC in nine populations, mapped to B. napus â  Darmor-bzhâ   reference genome v4.1. (XLSX 21 kb)
DOI: 10.15468/dl.8efsyd
title: Occurrence Download

description: A dataset containing 7608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles gambiae Giles, 1900",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 7608 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036892-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3903658_d2.v1
title: Additional file 2: Table S2. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: QTLs for FA and OC in nine populations, mapped to B. napus â  Darmor-bzhâ   reference genome v4.1. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3903658_d2
title: Additional file 2: Table S2. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: QTLs for FA and OC in nine populations, mapped to B. napus â  Darmor-bzhâ   reference genome v4.1. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3903670_d1
title: Additional file 1: of Genetic architecture of lipid traits in the Hispanic community health study/study of Latinos

description: Supplementary Tables. (ODS 129Â kb)
DOI: 10.6084/m9.figshare.c.3903670_d1.v1
title: Additional file 1: of Genetic architecture of lipid traits in the Hispanic community health study/study of Latinos

description: Supplementary Tables. (ODS 129Â kb)
DOI: 10.6084/m9.figshare.c.3903655_d2.v1
title: Additional file 1: Table S1. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

description: Origins and Q values of the varieties used in the present study. All varieties used in this study were pure line varieties. Bold varieties have Qâ
DOI: 10.6084/m9.figshare.c.3903655_d2
title: Additional file 1: Table S1. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

description: Origins and Q values of the varieties used in the present study. All varieties used in this study were pure line varieties. Bold varieties have Qâ
DOI: 10.6084/m9.figshare.c.3903658_d1.v1
title: Additional file 1: Table S1. of Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

description: Genes involved in FA biosynthesis and TAG formation in A. thaliana, B. rapa, B. oleracea and B. napus. (XLSX 39 kb)
DOI: 10.5281/zenodo.14502272
title: FUNCTIONAL AND STYLISTIC DIFFERENTIATION OF THE RUSSIAN LANGUAGE
DOI: 10.5281/zenodo.14502273
title: FUNCTIONAL AND STYLISTIC DIFFERENTIATION OF THE RUSSIAN LANGUAGE
DOI: 10.6084/m9.figshare.c.3902497_d2
title: Additional file 11: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Pearson correlations between protein-coding genes and lncRNAs. (XLSX 1804Â kb)
DOI: 10.6084/m9.figshare.c.3901363_d1
title: Additional file 1: Table S1. of Genome-wide characterization, evolution, and expression analysis of the leucine-rich repeat receptor-like protein kinase (LRR-RLK) gene family in Rosaceae genomes

description: Typical protein kinase in Arabidopsis and Rosaceae. Table S2. Atypical protein kinase in Arabidopsis and Rosaceae. Table S3. Subfamily classification of protein kinases and their related information. Table S4. Conserved domains of LRR-RLK subfamily members in Arabidopsis and Rosaceae. Table S5. Statistics of domain numbers and list of conserved domains for LRR-RLK genes in Arabidopsis and Rosaceae. Table S6. Statistics of intron number and intron length for LRR-RLK genes in Arabidopsis and Rosaceae. Table S7. Collinearity events and Ka/Ks values LRR-RLK genes in Arabidopsis and Rosaceae. Table S8. Number of WGD events and number of genes involved in WGD events in 23 LRR-RLK subfamilies in Arabidopsis and Rosaceae. Table S9. List of tandem duplicated LRR-RLK genes in Arabidopsis and Rosaceae. Table S10. Number tandem arrays and tandem duplicated genes in 23 LRR-RLK subfamilies in Arabidopsis and Rosaceae. Table S11. Expression (FPKM) of 201 strawberry LRR-RLK genes. Table S12. Expression (FPKM) of 244 apple LRR-RLK genes. Table S13. Expression (FPKM) of 427 Chinese white pear LRR-RLK genes. Table S14. Expression (FPKM) of 267 mei LRR-RLK genes. Table S15. Expression (FPKM) of 258 peach LRR-RLK genes. Table S16. Co-expression network attributes of LRR-RLK genes in five Rosaceae species. Table S17. Sequences of primers used in qRT-PCR. (XLSX 1945Â kb)
DOI: 10.6084/m9.figshare.c.3901363_d1.v1
title: Additional file 1: Table S1. of Genome-wide characterization, evolution, and expression analysis of the leucine-rich repeat receptor-like protein kinase (LRR-RLK) gene family in Rosaceae genomes

description: Typical protein kinase in Arabidopsis and Rosaceae. Table S2. Atypical protein kinase in Arabidopsis and Rosaceae. Table S3. Subfamily classification of protein kinases and their related information. Table S4. Conserved domains of LRR-RLK subfamily members in Arabidopsis and Rosaceae. Table S5. Statistics of domain numbers and list of conserved domains for LRR-RLK genes in Arabidopsis and Rosaceae. Table S6. Statistics of intron number and intron length for LRR-RLK genes in Arabidopsis and Rosaceae. Table S7. Collinearity events and Ka/Ks values LRR-RLK genes in Arabidopsis and Rosaceae. Table S8. Number of WGD events and number of genes involved in WGD events in 23 LRR-RLK subfamilies in Arabidopsis and Rosaceae. Table S9. List of tandem duplicated LRR-RLK genes in Arabidopsis and Rosaceae. Table S10. Number tandem arrays and tandem duplicated genes in 23 LRR-RLK subfamilies in Arabidopsis and Rosaceae. Table S11. Expression (FPKM) of 201 strawberry LRR-RLK genes. Table S12. Expression (FPKM) of 244 apple LRR-RLK genes. Table S13. Expression (FPKM) of 427 Chinese white pear LRR-RLK genes. Table S14. Expression (FPKM) of 267 mei LRR-RLK genes. Table S15. Expression (FPKM) of 258 peach LRR-RLK genes. Table S16. Co-expression network attributes of LRR-RLK genes in five Rosaceae species. Table S17. Sequences of primers used in qRT-PCR. (XLSX 1945Â kb)
DOI: 10.15468/dl.mzkz2n
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pandeidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036893-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3895852_d8.v1
title: Additional file 8: Table S2. of System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia

description: Model parameters. Symbols, definitions, values, units and references for all model parameters are listed in the table here. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3895852_d8
title: Additional file 8: Table S2. of System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia

description: Model parameters. Symbols, definitions, values, units and references for all model parameters are listed in the table here. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3895957_d1.v1
title: Additional file 1: of Block-based characterization of protease specificity from substrate sequence profile

description: Software package. A .tar.gz file that contains Perl and C++ scripts and an example to illustrate our approach. The package also includes a manual file (txt) for the instruction of the software. (GZ 11Â kb)
DOI: 10.6084/m9.figshare.c.3895957_d1
title: Additional file 1: of Block-based characterization of protease specificity from substrate sequence profile

description: Software package. A .tar.gz file that contains Perl and C++ scripts and an example to illustrate our approach. The package also includes a manual file (txt) for the instruction of the software. (GZ 11Â kb)
DOI: 10.6084/m9.figshare.c.3895852_d7.v1
title: Additional file 7: Table S1. of System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia

description: Table for the combinatorial numerical tests. Qualitative results of the numerical tests on combinations of possible regulatory relations are documented here, with all 81 combinations exhausted. The first four columns represent the regulatory code, “1” – inhibitory, “2” – none, and “3” – activatory effects, respectively. Molecular actions are indicated by the column headers. The last two columns show the agreement or discrepancy with input experimental data, “0” qualitative discrepancy, “1” qualitative agreement. The input experimental data for model training are the cell-cycle status after transduction of Maff/Egr3 and qRT-PCR results for cell-cycle genes. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3895852_d7
title: Additional file 7: Table S1. of System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia

description: Table for the combinatorial numerical tests. Qualitative results of the numerical tests on combinations of possible regulatory relations are documented here, with all 81 combinations exhausted. The first four columns represent the regulatory code, “1” – inhibitory, “2” – none, and “3” – activatory effects, respectively. Molecular actions are indicated by the column headers. The last two columns show the agreement or discrepancy with input experimental data, “0” qualitative discrepancy, “1” qualitative agreement. The input experimental data for model training are the cell-cycle status after transduction of Maff/Egr3 and qRT-PCR results for cell-cycle genes. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3893314_d5.v1
title: Additional file 5: Table S2. of Hexokinases link DJ-1 to the PINK1/parkin pathway

description: Complete list of biochemicals quantified in DJ-1 knockout mouse brains (TIFF 91 kb) (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3893314_d5
title: Additional file 5: Table S2. of Hexokinases link DJ-1 to the PINK1/parkin pathway

description: Complete list of biochemicals quantified in DJ-1 knockout mouse brains (TIFF 91 kb) (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3893314_d1
title: Additional file 1: Table S1. of Hexokinases link DJ-1 to the PINK1/parkin pathway

description: Complete list of proteins quantified using iTRAQ in DJ-1 knockout rodent brains (XLSX 309 kb)
DOI: 10.6084/m9.figshare.c.3893314_d1.v1
title: Additional file 1: Table S1. of Hexokinases link DJ-1 to the PINK1/parkin pathway

description: Complete list of proteins quantified using iTRAQ in DJ-1 knockout rodent brains (XLSX 309 kb)
DOI: 10.6084/m9.figshare.c.3887437_d7
title: Additional file 7: Table S5. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Gene ontology function enrichment analysis of DEPs involved in PPI network construction. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d7.v1
title: Additional file 7: Table S5. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Gene ontology function enrichment analysis of DEPs involved in PPI network construction. (XLSX 15Â kb)
DOI: 10.15468/dl.7gu5ku
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Periphyllidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036895-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkdmm8
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-141.6204 59.69288,-125.27065 58.54071,-121.32037 60.79018,-141.01688 70.39154,-141.6204 59.69288))",
 "OccurrenceStatus is Present",
 "TaxonKey is Mystacides sepulchralis (Walker, 1852)"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036896-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3886498_d7.v1
title: MOESM1 of Genome-wide SNP data unveils the globalization of domesticated pigs

description: Additional file 1: Table S1. Detailed information and parameters of population genetics for pig populations in this study.
DOI: 10.6084/m9.figshare.c.3885127_d6
title: Additional file 6: of Whoâ  s holding the baby? A prospective diary study of the contact patterns of mothers with an infant

description: Mean daily number of non-companion contacts. Provides data from our study underlying Supplementary FigureÂ 1. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3885127_d6.v1
title: Additional file 6: of Whoâ  s holding the baby? A prospective diary study of the contact patterns of mothers with an infant

description: Mean daily number of non-companion contacts. Provides data from our study underlying Supplementary FigureÂ 1. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3885127_d4.v1
title: Additional file 4: of Whoâ  s holding the baby? A prospective diary study of the contact patterns of mothers with an infant

description: Mean daily number of contacts of infants. Provides data from our study underlying Fig. 3. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3885127_d4
title: Additional file 4: of Whoâ  s holding the baby? A prospective diary study of the contact patterns of mothers with an infant

description: Mean daily number of contacts of infants. Provides data from our study underlying Fig. 3. (XLSX 10 kb)