cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6zbbku
title: Occurrence Download

description: A dataset containing 23540611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "StateProvince is New Jersey",
 "Year 2013-2024"
 ]
}

 The dataset includes 23540611 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037933-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628454_d9.v1
title: Additional file 4: Table S3. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Annotation of root transcripts to the Uniprot database. (XLS 16520 kb)
DOI: 10.6084/m9.figshare.c.3628559_d5.v1
title: Additional file 9: of Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors

description: qRTPCR_primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3628559_d8.v1
title: Additional file 3: of Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors

description: Fom genes up or down-regulated in A17 plants versus in vitro. (XLSX 167 kb)
DOI: 10.6084/m9.figshare.c.3628616_d1.v1
title: Additional file 1: of The economic burden of asthma and chronic obstructive pulmonary disease and the impact of poor inhalation technique with commonly prescribed dry powder inhalers in three European countries

description: Inputs used in the model for the analyses presented in this publication. (XLSX 20Â kb)
DOI: 10.15468/dl.n6hewu
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Austroblechnum penna-marina (Poir.) Gasper & V.A.O.Dittrich"
 ]
}

 The dataset includes 270 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037963-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628631_d18.v1
title: MOESM11 of Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

description: Additional file 11. Gene symbols, annotations and expression abundance data for S. fibuligera genes involved in carbon and sulfur metabolism.
DOI: 10.6084/m9.figshare.c.3628700_d5.v1
title: Additional file 4: Data S2. of De novo transcriptome sequencing of black pepper (Piper nigrum L.) and an analysis of genes involved in phenylpropanoid metabolism in response to Phytophthora capsici

description: The differentially expressed transcripts enriched in phenylpropanoid metabolic pathways. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3628724_d1.v1
title: MOESM5 of Classifying publications from the clinical and translational science award program along the translational research spectrum: a machine learning approach

description: Additional file 5. Threshold validation: For 50 articles randomly chosen from each decile of the scores returned by the T0 classifier this file lists the PMID, the classifier score, and a manual classification of either “T0” or “not T0”.
DOI: 10.6084/m9.figshare.c.3628730_d1.v1
title: Additional file 1: of Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae

description: Figure S1. Efficient bisulfite conversion of non-methylated cytosine residues. Figure S2. Characterization of Arabidopsis thaliana T-DNA mutants. Figure S3. Specificity of tRNA and rRNA MTases. Figure S4. Multiple sequence alignment of methyltransferase motifs from Arabidopsis thaliana RMTases. The amino acid sequences of two subfamilies of RMTases in Arabidopsis; (A) TRM4A and TRM4B; (B) NOP2A/OLI2, NOP2B and NOP2C were aligned using Clustal Omega [72]. Table S1. Unique tRNA isodecoder consensus sequences used for tRNA expression and methylation analysis. Table S2. Annotation table of tRNA isodecoder sequences detected in diverse plant species. Table S3. Ribosomal RNA sequences used for methylation analysis in diverse plant species and number of m5C sites. Table S4. Methylation % of tRNAs from A. thaliana, B. rapa, T. durum, C. taxifolia, N. occulata and G. biloba. Table S5. Methylation % of rRNAs from A. thaliana, B. rapa, T. durum, C. taxifolia, N. occulata and G. biloba. Table S6. Primer sequences used in this study [73]. Table S7. Read coverage of libraries sequenced. (ZIP 5681 kb)
DOI: 10.6084/m9.figshare.c.3628724_d2.v1
title: MOESM1 of Classifying publications from the clinical and translational science award program along the translational research spectrum: a machine learning approach

description: Additional file 1. Filter terms: Search terms used to filter randomly selected articles indexed to CTSA grants in order to increase the incidence of T1 and T2 articles in the training set.
DOI: 10.6084/m9.figshare.c.3628724_d3.v1
title: MOESM3 of Classifying publications from the clinical and translational science award program along the translational research spectrum: a machine learning approach

description: Additional file 3. External validation: For each of 300 PMIDs (top 100 scored from each classifier), the file lists the classifier for which it received a top score, the classification given by the two coders, and, when applicable, the decision of the third coder.
DOI: 10.6084/m9.figshare.c.3628724_d4.v1
title: MOESM4 of Classifying publications from the clinical and translational science award program along the translational research spectrum: a machine learning approach

description: Additional file 4. Training set: For each PMID in training set, the file lists the manual codings and, where applicable, the decision of the lead author.
DOI: 10.6084/m9.figshare.c.3628754_d2.v1
title: Additional file 14: Table S4. of Variation in NAT2 acetylation phenotypes is associated with differences in food-producing subsistence modes and ecoregions in Africa

description: Pairwise Wilcoxon rank sum tests of differences in predicted frequency of NAT2 slow acetylation among subsistence modes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3628868_d4.v1
title: Additional file 2: Table S1. of Silencing of GATA3 defines a novel stem cell-like subgroup of ETP-ALL

description: List of DEG comparing patients with low and high GATA3 mRNA expression. Microarray analyses of diagnostic bone marrow samples of 83 adult patients with T-ALL were used to generate a list of DEG comparing GATA3low and GATA3high. Only probe sets with at least 1.5-fold up- or downregulation with respect to GATA3 expression and a FDR &lt;0.05 were included. (XLSX 102 kb)
DOI: 10.6084/m9.figshare.c.3628883_d1.v1
title: MOESM2 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

description: Additional file 2: Analysis of Gene Ontology categories associated with differential expression during HIV 89.6 infection of primary CD4 + T cells. Counts of differentially expressed genes for each Gene Ontology category are stored in a csv file with columns categoryÂ name, the numbers of genes differentially up- and downregulated or not significantly changed and odds ratios and p-values from Fisherâ  s exact tests.
DOI: 10.15468/dl.nxvjqw
title: Occurrence Download

description: A dataset containing 37290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Passerina ciris (Linnaeus, 1758)"
 ]
}

 The dataset includes 37290 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037962-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybd2fj
title: Occurrence Download

description: A dataset listing the 17 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5.56_1",
 "Geometry POLYGON((-119.26783 34.24051,-119.26431 34.22824,-119.17143 34.24888,-119.1206 34.28002,-119.08143 34.31863,-119.009 34.34997,-118.96409 34.36334,-118.90543 34.37748,-118.81313 34.38379,-118.6956 34.405,-118.77529 34.41245,-118.83033 34.3964,-118.89473 34.39698,-118.96849 34.37939,-119.0004 34.36946,-119.06366 34.35207,-119.10508 34.31263,-119.21143 34.24453,-119.26783 34.24051))",
 "TaxonKey is Carabidae"
 ]
}

 The dataset's 17 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037951-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628883_d3.v1
title: MOESM4 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

description: Additional file 4: Genes called as up- or downregulated by studies of expression during HIV infection. Genes called as differentially expressed in the five studies analyzed in the meta-analysis of differential expression with HIV infection are stored in a csv file with columns study, the gene name(s) and whether the differential expression was up or down.
DOI: 10.15468/dl.dqcv99
title: Occurrence Download

description: A dataset containing 42741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Passerina cyanea (Linnaeus, 1766)"
 ]
}

 The dataset includes 42741 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037961-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628991_d3.v1
title: Additional file 5 of Profound impact of sample processing delay on gene expression of multiple myeloma plasma cells

description: Table S5 - Genes differentially expressed in risk predictors. Subset of genes from IFM15, GEP70 & EMC-92 that show differential expression between shipped and in-house samples. (XLSX 16.3 KB)
DOI: 10.6084/m9.figshare.c.3628991_d5.v1
title: Additional file 1 of Profound impact of sample processing delay on gene expression of multiple myeloma plasma cells

description: Participating_centers.xls. Names of the participating centers and the ethics committees that granted approval to this study. (XLS 35.5 KB)
DOI: 10.6084/m9.figshare.c.3628991_d6.v1
title: Additional file 7 of Profound impact of sample processing delay on gene expression of multiple myeloma plasma cells

description: Table S6 - Multivariate Cox regression on overall survival of HD4 patients. Results of cox regression analysis on OS of external HD4 patients. (XLS 22.0 KB)
DOI: 10.6084/m9.figshare.c.3629027_d1.v1
title: Additional file 3: of Tryptophan metabolism, its relation to inflammation and stress markers and association with psychological and cognitive functioning: Tasmanian Chronic Kidney Disease pilot study

description: Table S2. Spearman rank correlation coefficients for associations of psychological and cognitive functioning, with clinical parameters and serum metabolites. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3628991_d7.v1
title: Additional file 3 of Profound impact of sample processing delay on gene expression of multiple myeloma plasma cells

description: Table S2 - Altered Pathways. KEGG Pathways significantly enriched in deregulated genes of shipped samples. (XLSX 11.5 KB)
DOI: 10.6084/m9.figshare.c.3629027_d3.v1
title: Additional file 4: of Tryptophan metabolism, its relation to inflammation and stress markers and association with psychological and cognitive functioning: Tasmanian Chronic Kidney Disease pilot study

description: Raw Data in five data sheets including Patients relevant metadata, quantified metabolites (given at Îźg/L as well as Îźmol/L), psychology measures, common medication and comorbidities. (XLS 58Â kb)
DOI: 10.6084/m9.figshare.c.3629129_d2.v1
title: Additional file 2: of Scrapie incidence and PRNP polymorphisms: rare small ruminant breeds of Sicily with TSE protecting genetic reservoirs

description: Total number of analysed animals for each Sicilian goat breed with single polymorphism frequency and percentage. (XLS 56Â kb)
DOI: 10.6084/m9.figshare.c.3629099_d10.v1
title: Additional file 2: of A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle

description: Functional effects of 52 variants in LD with BH2. The functional consequences of the non-reference alleles were predicted using the Variant Effect Predictor tool from Ensembl. (TXT 16Â kb)
DOI: 10.6084/m9.figshare.c.3629147_d1.v1
title: Additional file 2: of cFinder: definition and quantification of multiple haplotypes in a mixed sample

description: Archive containing test data. Include annotations and exemplary alignment files from AVA and CLC for sample 5, as well as simulated test reads for overlapping amplicons.
DOI: 10.6084/m9.figshare.c.3629150_d1.v1
title: Additional file 4 of Functional networks inference from rule-based machine learning models

description: Enriched terms. Complete list of enriched terms for each dataset and network. (XZ 3041 kb)
DOI: 10.6084/m9.figshare.c.3629147_d2.v1
title: Additional file 1: of cFinder: definition and quantification of multiple haplotypes in a mixed sample

description: Archive containing the cFinder software. Includes executable, library and settings files.
DOI: 10.6084/m9.figshare.c.3629153_d1.v1
title: Additional file 4 of FlexFlux: combining metabolic flux and regulatory network analyses

description: Comparison between rFBA and RSA on 125 conditions and 110 gene knock-outs of E. coli regulatory and metabolic networks. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3629150_d3.v1
title: Additional file 2 of Functional networks inference from rule-based machine learning models

description: Networks. All networks used in the analysis given as a list of edges. (XZ 11980 kb)
DOI: 10.6084/m9.figshare.c.3629153_d2.v1
title: Additional file 5 of FlexFlux: combining metabolic flux and regulatory network analyses

description: Constraint file used to run FlexFlux simulations of the lactose and maltose operon. (TXT 939 bytes)
DOI: 10.6084/m9.figshare.c.3629153_d3.v1
title: Additional file 7 of FlexFlux: combining metabolic flux and regulatory network analyses

description: Fibroblast regulatory network [ 44 ] in the SBML format. (TXT 505 kb)
DOI: 10.6084/m9.figshare.c.3629150_d4.v1
title: Additional file 3 of Functional networks inference from rule-based machine learning models

description: Disease-associated genes. Complete list of the disease-associated genes for each dataset. (XZ 46 kb)
DOI: 10.6084/m9.figshare.c.3629246_d3.v1
title: Additional file 3: Table S2. of Transposable element detection from whole genome sequence data

description: Sample-level examination of intersections between TE detection methods. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.c.3629267_d4.v1
title: Additional file 4: Table S1. of Using genome-wide associations to identify metabolic pathways involved in maize aflatoxin accumulation resistance

description: Association effect and p values for tagSNPs and genes in the 17 pathways with FDRâ
DOI: 10.6084/m9.figshare.c.3629258_d4.v1
title: Additional file 3: Table S8. of Eligibility of real-life patients with COPD for inclusion in trials of inhaled long-acting bronchodilator therapy

description: Overview of inclusion and exclusion criteria of RCTs testing tiotropium. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3629258_d5.v1
title: Additional file 4: Table S9. of Eligibility of real-life patients with COPD for inclusion in trials of inhaled long-acting bronchodilator therapy

description: Overview of inclusion and exclusion criteria of RCTs testing for RCTs testing other single treatments. (XLSX 17Â kb)
DOI: 10.5519/qd.thqlzfqr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (253 records)
DOI: 10.6084/m9.figshare.c.3629297_d1.v1
title: Additional file 2: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: Pairwise synonymous substitution rate (Ks) of the three nuclear loci for the six Acanthus species. The abbreviations were listed in Additional file 9. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629297_d2.v1
title: Additional file 7: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: List of the 99 candidate positively selected genes (PSGs) in Acanthus ilicifolius . â   indicates that the gene cannot find their orthologous genes in Arabidopsis. Gene ID of the 23 PSGs involved in salt, high temperature and UV stress tolerance, seedling germination and embryo development is shown in bold. (XLSX 14Â kb)
DOI: 10.5281/zenodo.14510537
title: BUXGALTERIYA HISOBIDA AXBOROT TEXNOLOGIYALARINING O'RNI

description: Iqtisodiyotning rivojlanishida bazor munosabatlariga o'tish jarayonida buxgalteriya hisobini tashkil etish va uni olib borish katta ahamiyat kasb etadi. Bu esa o'z navbatida buxgalteriya hisobining axborot tizimi va uni  kompyuterda ishlab chiqish, ya'ni hisobni to'g'ri yuritishda foydalaniladigan asosiy vositasi bo'lib kelmoqda. Ushbu maqolada buxgalteriya hisobini yuritishda axborot texnologiyalarning o'rni, ularning vazifalari, qanday yuritilishi usullari va zamonaviy uslubiyatlari yoritib berilgan.
DOI: 10.5281/zenodo.14510538
title: BUXGALTERIYA HISOBIDA AXBOROT TEXNOLOGIYALARINING O'RNI

description: Iqtisodiyotning rivojlanishida bazor munosabatlariga o'tish jarayonida buxgalteriya hisobini tashkil etish va uni olib borish katta ahamiyat kasb etadi. Bu esa o'z navbatida buxgalteriya hisobining axborot tizimi va uni  kompyuterda ishlab chiqish, ya'ni hisobni to'g'ri yuritishda foydalaniladigan asosiy vositasi bo'lib kelmoqda. Ushbu maqolada buxgalteriya hisobini yuritishda axborot texnologiyalarning o'rni, ularning vazifalari, qanday yuritilishi usullari va zamonaviy uslubiyatlari yoritib berilgan.
DOI: 10.6084/m9.figshare.c.3629378_d4.v1
title: Additional file 2: of Difference in C3â  C4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

description: Central carbon metabolism model for M. extorquens AM1 and list of metabolites with full name. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3629372_d3.v1
title: Additional file 5: Table S5. of Variation in life history traits and transcriptome associated with adaptation to diet shifts in the ladybird Cryptolaemus montrouzieri

description: Annotation of differentially expressed genes (DEGs) in comparison of fourth instar larvae feeding on mealybugs and aphids (LM vs LA). (XLS 353 kb)
DOI: 10.6084/m9.figshare.c.3629372_d4.v1
title: Additional file 6: Table S6. of Variation in life history traits and transcriptome associated with adaptation to diet shifts in the ladybird Cryptolaemus montrouzieri

description: Annotation of differentially expressed genes (DEGs) in comparison of female adults feeding on mealybugs and aphids (AM vs AA). (XLS 149 kb)
DOI: 10.6084/m9.figshare.c.3629375_d5.v1
title: Additional file 1: of Independent mitochondrial and nuclear exchanges arising in Rhizophagus irregularis crossed-isolates support the presence of a mitochondrial segregation mechanism

description: Table showing qPCR data (ct values) of mitochondrial genotyping. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3629378_d5.v1
title: Additional file 3: of Difference in C3â  C4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

description: Three replicates of isotopomer labeling pattern of metabolites used in the simulation. (XLSX 77Â kb)
DOI: 10.6084/m9.figshare.c.3629387_d1.v1
title: MOESM1 of Early hyperreactive malarial splenomegaly and risk factors for evolution into the full-blown syndrome: a single-centre, retrospective, longitudinal study

description: Additional file 1. Study database.
DOI: 10.6084/m9.figshare.c.3629372_d6.v1
title: Additional file 7: Table S7. of Variation in life history traits and transcriptome associated with adaptation to diet shifts in the ladybird Cryptolaemus montrouzieri

description: Candidate differentially expressed genes (DEGs) in comparison of fourth instar larvae feeding on mealybugs and aphids (LM vs LA). (XLS 126 kb)
DOI: 10.6084/m9.figshare.c.3629405_d1.v1
title: Additional file 2: of A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

description: Transcript sequences. (TXT 6650 kb)
DOI: 10.6084/m9.figshare.c.3629405_d2.v1
title: Additional file 4: Table S2. of A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

description: Immunogenicity scores. (XLSX 5486 kb)
DOI: 10.6084/m9.figshare.c.3629522_d1.v1
title: Additional file 1: of Plumage quality mediates a life-history trade-off in a migratory bird

description: Raw data for feather measurements, moult status, and migratory traits of the first-year common snipe. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3629528_d1.v1
title: Additional file 2: of Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids

description: BLASTn megablast results (limit set: 1000 hits). Minimum, maximum (green) and calculated average (grey) percentage of similarity for each pair of species as well as the overall average (yellow) are shown. Fish systematics followed. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3629528_d2.v1
title: Additional file 1: of Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids

description: Estimates of evolutionary divergence between selected Rex3 partial sequences (Neighbour-Joining method, 1000 replicates) [ 37, 38 ]. Species are referred to by a three-letter code followed by GenBank accession numbers (alphabetical order). For more details refer to the text and Fig. 2. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3629546_d1.v1
title: Additional file 1: of Poor awareness of syphilis prevention and treatment knowledge among six different populations in south China

description: Dataset of the syphilis awareness survey among six different populations in Shenzhen, China. (XLS 934Â kb)
DOI: 10.6084/m9.figshare.c.3629549_d1.v1
title: Additional file 1: of The effects of lymph node status on predicting outcome in ER+ /HER2- tamoxifen treated breast cancer patients using gene signatures

description: (RAR 837 kb)
DOI: 10.15468/dl.ma25p4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-120.41753 34.80689,-120.34756 34.80823,-120.35182 34.86831,-120.42261 34.8704,-120.42018 34.81551,-120.41753 34.80689))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)",
 "Year 2016-2024"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037965-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629600_d9.v1
title: Additional file 11: Table S2. of IMPACT is a GCN2 inhibitor that limits lifespan in Caenorhabditis elegans

description: qPCR data of Additional file 2: Figure S2. (XLSX 12 kb)