cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5650057
title: FASTA file containing the MYB encoding genes at the Aft locus with genomic sequences corresponding to wild and cultivated tomato accessions

description: FASTA sequences correspond to the MYB encoding genes <em>An2-like </em>and <em>Ant1</em>. The genomic sequences were combined correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome (Hosmani et al., 2019), LA1996 [MN242011.1, EF433417.1(Sapir et al., 2008; Colanero et al., 2020)], and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), <em>S. lycopersicum </em>accession LA1996 [MN242011.1, EF433417.1 (Sapir et al., 2008; Colanero et al., 2020)], <em>S. chilense</em> accession LA1930 [MN242012.1 (Colanero et al., 2020)] were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/) and the National Center for Biotechnology Information (NCBI) (available at NCBI: https://www.ncbi.nlm.nih.gov).
description: Raw FASTA files
description: {"references": ["Colanero, S., Tagliani, A., Perata, P., & Gonzali, S. (2020). Alternative splicing in the anthocyanin fruit gene encoding an R2R3 MYB transcription factor affects anthocyanin biosynthesis in tomato fruits. Plant communications, 1(1), 100006.", "Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps. BioRxiv, 767764.", "Sapir, M., Oren-Shamir, M., Ovadia, R., Reuveni, M., Evenor, D., Tadmor, Y., ... & Levin, I. (2008). Molecular aspects of Anthocyanin fruit tomato in relation to high pigment-1. Journal of Heredity, 99(3), 292-303.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing. The Plant Journal, 80(1), 136-148."]}
DOI: 10.5281/zenodo.5649996
title: FASTA file containing to the MYB encoding gene Ant1 genomic sequences corresponding to wild and cultivated tomato accessions

description: Fasta sequence correspond to the MYB encoding gene <em>An2-like</em>. The genomic sequences correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome, and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/).
description: Raw FASTA files
description: {"references": ["Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps. BioRxiv, 767764.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing. The Plant Journal, 80(1), 136-148."]}
DOI: 10.5281/zenodo.5649995
title: FASTA file containing to the MYB encoding gene Ant1 genomic sequences corresponding to wild and cultivated tomato accessions

description: Fasta sequence correspond to the MYB encoding gene <em>An2-like</em>. The genomic sequences correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome, and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/).
description: Raw FASTA files
description: {"references": ["Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps. BioRxiv, 767764.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing. The Plant Journal, 80(1), 136-148."]}
DOI: 10.5281/zenodo.5649546
title: FASTA file containing the MYB encoding gene An2-like genomic sequences corresponding to wild and cultivated tomato accessions

description: FASTA sequence corresponds to the MYB encoding gene <em>An2-like</em>. The genomic sequences correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome (Hosmani et al., 2019), <em>S. lycopersicum </em>variety Indigo Rose (Yan et al., 2020), <em>S. lycopersicum</em> accession LA1996 [MN242011.1 (Colanero et al., 2020)], <em>S. chilense </em>accession LA1930 [MN242012.1 (Colanero et al., 2020)], and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), Indigo Rose [MN433087 (Yan et al., 2020)], <em>S. lycopersicum </em>accession LA1996 [MN242011.1, EF433417.1 (Sapir et al., 2008; Colanero et al., 2020)], <em>S. chilense</em> accession LA1930 [MN242012.1 (Colanero et al., 2020)] were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/) and the National Center for Biotechnology Information (NCBI)(available at NCBI: https://www.ncbi.nlm.nih.gov).
description: Raw FASTA files
description: {"references": ["Colanero, S., Tagliani, A., Perata, P., & Gonzali, S. (2020). Alternative splicing in the anthocyanin fruit gene encoding an R2R3 MYB transcription factor affects anthocyanin biosynthesis in tomato fruits.\u00a0Plant communications,\u00a01(1), 100006.", "Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps.\u00a0BioRxiv, 767764.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing.\u00a0The Plant Journal,\u00a080(1), 136-148.", "Yan, S., Chen, N., Huang, Z., Li, D., Zhi, J., Yu, B., ... & Qiu, Z. (2020). Anthocyanin Fruit encodes an R2R3\u2010MYB transcription factor, SlAN2\u2010like, activating the transcription of SlMYBATV to fine\u2010tune anthocyanin content in tomato fruit.\u00a0New Phytologist,\u00a0225(5), 2048-2063."]}
DOI: 10.5281/zenodo.5649545
title: FASTA file containing the MYB encoding gene An2-like genomic sequences corresponding to wild and cultivated tomato accessions

description: FASTA sequence corresponds to the MYB encoding gene <em>An2-like</em>. The genomic sequences correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome (Hosmani et al., 2019), <em>S. lycopersicum </em>variety Indigo Rose (Yan et al., 2020), <em>S. lycopersicum</em> accession LA1996 [MN242011.1 (Colanero et al., 2020)], <em>S. chilense </em>accession LA1930 [MN242012.1 (Colanero et al., 2020)], and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), Indigo Rose [MN433087 (Yan et al., 2020)], <em>S. lycopersicum </em>accession LA1996 [MN242011.1, EF433417.1 (Sapir et al., 2008; Colanero et al., 2020)], <em>S. chilense</em> accession LA1930 [MN242012.1 (Colanero et al., 2020)] were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/) and the National Center for Biotechnology Information (NCBI)(available at NCBI: https://www.ncbi.nlm.nih.gov).
description: Raw FASTA files
description: {"references": ["Colanero, S., Tagliani, A., Perata, P., & Gonzali, S. (2020). Alternative splicing in the anthocyanin fruit gene encoding an R2R3 MYB transcription factor affects anthocyanin biosynthesis in tomato fruits.\u00a0Plant communications,\u00a01(1), 100006.", "Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps.\u00a0BioRxiv, 767764.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing.\u00a0The Plant Journal,\u00a080(1), 136-148.", "Yan, S., Chen, N., Huang, Z., Li, D., Zhi, J., Yu, B., ... & Qiu, Z. (2020). Anthocyanin Fruit encodes an R2R3\u2010MYB transcription factor, SlAN2\u2010like, activating the transcription of SlMYBATV to fine\u2010tune anthocyanin content in tomato fruit.\u00a0New Phytologist,\u00a0225(5), 2048-2063."]}
DOI: 10.25810/c862-0e81.43
title: US Television Coverage of Climate Change or Global Warming, 2000-2021 - October 2021

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5517/ccdc.csd.cc23rnm5
title: CCDC 1959157: Experimental Crystal Structure Determination

description: Related Article: Yosdel Plasencia, Yosuan Avila, Joelis Rodríguez-Hernández, Manuel Avila, Edilso Reguera|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc253xrz
title: CCDC 1999771: Experimental Crystal Structure Determination

description: Related Article: Joelis joelis.rodriguez|2021|CSD Communication|||
DOI: 10.25422/azu.data.12814340
title: Supplementary data for "The north polar basal unit of Mars: An Amazonian record of surface processes and climate events"

description: This repository contains the geologic and radar mapping vector and raster products resulting from the analysis of radar profiles and visible imagery data of the basal unit (BU) in the Planum Boreum of Mars.<br>The radar profiles and imagery data are publicly available on the Planetary Data System (https://pds.nasa.gov/). Please refer to the Data and Methods section of the manuscript for details on the analysis and processing procedures.<br>The final products contained in this repository are in the form of geologic mapping vector files (shapefiles), radar mapping vector and raster files, and impact crater mapping files (spatial crater count, SCC). All vector and raster files use the following projection (projection information is stored in each file): North Polar Stereographic with IAU Mars 2000 datum.<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.25422/azu.data.12814340.v1
title: Supplementary data for "The north polar basal unit of Mars: An Amazonian record of surface processes and climate events"

description: This repository contains the geologic and radar mapping vector and raster products resulting from the analysis of radar profiles and visible imagery data of the basal unit (BU) in the Planum Boreum of Mars.<br>The radar profiles and imagery data are publicly available on the Planetary Data System (https://pds.nasa.gov/). Please refer to the Data and Methods section of the manuscript for details on the analysis and processing procedures.<br>The final products contained in this repository are in the form of geologic mapping vector files (shapefiles), radar mapping vector and raster files, and impact crater mapping files (spatial crater count, SCC). All vector and raster files use the following projection (projection information is stored in each file): North Polar Stereographic with IAU Mars 2000 datum.<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.21227/z5te-qz36
title: Decision Variables of class of evolutionary algorithms for Linear Antenna Array Design

description: Decision variables of the best run for each algorithm
DOI: 10.5281/zenodo.5650093
title: Top Popular Animes

description: Top popular animes dataset from myanimelist. Done with Python. Animes més populars de myanimelist. Fet amb Python. Cada fila del dataset corespon a un anime. - Nom: títol del anime.<br> - Nota: Nota mitja de les valoracions dels usuaris.<br> - Ranking: Posició en el ranking de més populars.<br> - Seguidors: Nombre de seguidors en la pagina.<br> - Tipus: tipus del anime, el qual pot ser “TV” (serie de TV), “Movie” (pelicula), “OVA” i <br> “Special” (episodis espacials) i “ONA” (serie online).<br> - Episodis: Número d’episodis totals.<br> - Llicència: Llista de distribuïdors.<br> - Estudi: Llista de productors.<br> - Gènere: temes relacionats amb aquell anime (exemple: Misteri, Suspens, etc.).<br> - Demografia: categoria japonesa per saber a qui va dirigit l’anime, per exemples: Shounen(adolecent masculí), Shojo(adolecent femení), Ecchi (adults), etc.<br> - Edat: Rang d’edat per visualitzar l’anime
DOI: 10.5281/zenodo.5650092
title: Top Popular Animes

description: Top popular animes dataset from myanimelist. Done with Python. Animes més populars de myanimelist. Fet amb Python. Cada fila del dataset corespon a un anime. - Nom: títol del anime.<br> - Nota: Nota mitja de les valoracions dels usuaris.<br> - Ranking: Posició en el ranking de més populars.<br> - Seguidors: Nombre de seguidors en la pagina.<br> - Tipus: tipus del anime, el qual pot ser “TV” (serie de TV), “Movie” (pelicula), “OVA” i <br> “Special” (episodis espacials) i “ONA” (serie online).<br> - Episodis: Número d’episodis totals.<br> - Llicència: Llista de distribuïdors.<br> - Estudi: Llista de productors.<br> - Gènere: temes relacionats amb aquell anime (exemple: Misteri, Suspens, etc.).<br> - Demografia: categoria japonesa per saber a qui va dirigit l’anime, per exemples: Shounen(adolecent masculí), Shojo(adolecent femení), Ecchi (adults), etc.<br> - Edat: Rang d’edat per visualitzar l’anime
DOI: 10.15468/ukxkux
title: Fauna marina de la costa vasca

description: Pendiente de cargar los datos del Endpoint.
DOI: 10.6084/m9.figshare.16943212.v1
title: Impact of the COVID-19 pandemic on the survival of small and medium businesses in Mexico

description: With this questionnaire, we expect to be able to measure the impact of the current crisis on small and medium businesses in order to create strategies to help them thrive. You will be required to read every question and answer it accordingly. Your participation will be anonymous, and the answers will be used with academic purposes only. We thank you in advance for your collaboration.
DOI: 10.6084/m9.figshare.16943212
title: Impact of the COVID-19 pandemic on the survival of small and medium businesses in Mexico

description: With this questionnaire, we expect to be able to measure the impact of the current crisis on small and medium businesses in order to create strategies to help them thrive. You will be required to read every question and answer it accordingly. Your participation will be anonymous, and the answers will be used with academic purposes only. We thank you in advance for your collaboration.
DOI: 10.17632/7yxnnpv4jr.1
title: Do dividend announcements override the pandemic impacts? An evidence from the BSE 500 constituent firms

description: The data contains closing prices and log-returns of 169 BSE500 constituent companies which declared final dividend during the year 2020 and 163 BSE500 constituent companies which had previously declared final dividend during the year 2019. The data has been collected from ProwessIQ and the BSE Website. The dividend announcements from January 2019 to December 2020 have been collected from www.moneycontrol.com. The firms with regular trading history and those having a sufficient number of trading days as per our estimation and event window have been included in the sample. We calculate the daily returns using the formula LN[(Ct-1)/Ct] in excel. In this data, we provide the complete sample list, closing prices, and daily log returns.
DOI: 10.17632/wwcc8df345.1
title: How the air travel restrictions to India impacted the global airline industry's stock returns? An event study analysis

description: We examine the impacts of the travel restrictions and bans imposed by several nations on India. Hence, our interest is concerned with the airline stocks listed in the nations' leading stock market, which have imposed restrictions/bans as of 30 April 2021. Initially, we had 20 nations that either imposed travel restrictions or travel bans. Further, the airline stock to be included in the sample must have a history of regular trade, and data for the estimation and event window is available. Owing to these conditions, we include 34 airline stocks across seven nations in our final sample.
We collect the adjusted closing prices, the quarterly revenue, and net earnings of the sample firms from Yahoo Finance. We also collect the closing prices of the leading stock market indices of the sample nations. The adjusted closing prices have been collected for t-216 to t+5. The quarterly revenue and net earnings have been collected for the four quarters of the year 2020.
DOI: 10.17632/75d9k6wysr.1
title: Bulk atmospheric deposition of fallout radionuclides (FRNs) beryllium-7 and lead-210, with major- and trace-elements (MTEs) including Al, C, Ca, K, Fe, Mg, Mn, N, Na, P, S, Sr, V, Hg, and Zn

description: Bulk atmospheric deposition collected weekly for 9 years, March 2011 - March 2020, based in Hanover, NH, USA. Samples are collected in 650 cm^2 polyethylene buckets at 40 cm height above ground.  Collectors are weighed to determine precipitation total [cm]. Samples are acidified to 2% HCl within the collector, and then vacuum filtered with tared 0.5 um quartz fiber filters.  Insoluble mass deposition [mg m-2] is determined by gravimetry. Fallout radionuclides (FRNs) beryllium-7 and lead-210 are measured by gamma spectrometry [Bq m-2] following pre-concentration by MnO2 co-precipitation, with stable Be and Pb added as yield monitors. Major- and trace-elements (MTEs) are measured by ICPOES (Thermo Iris Intrepid II, and Spectro Arcos) [mg m-2], and total Hg by ICPMS (Agilent 7700) [ug m-2].
DOI: 10.6084/m9.figshare.16909453
title: Immune cells

description: We characterized human and mouse immune cells in SARS-CoV-2 infected and uninfected <i>MISTRG6-hACE2</i>mice by flow cytometry to evaluate the cells that drive immunopathology and viral clearance.We reported frequencies (%) of cells at different times post-infection.
DOI: 10.34740/kaggle/ds/1697612
title: Climate Change Tweets Ids
DOI: 10.5281/zenodo.5650136
title: Data and script: Community size can affect the signals of ecological drift and niche selection on biodiversity

description: Updated version of the code. Data files are the same. This is the final version of the code, associated with a manuscript published in Ecology (doi: 10.1002/ecy.3014). A preprint is also available: https://www.biorxiv.org/content/10.1101/515098v1.abstract This is a unique dataset on insect communities sampled identically in a total of 200 streams in climatically highly different regions (100 in Brazil and 100 in Finland). The sampling design included 5 streams (communities) per watershed and provided us replicates of metacommunities (watersheds). Data also include information on in-stream variables (such as current velocity (m/s), depth (cm), stream width (cm), % of sand (0.25-2 mm), gravel (2-16 mm), pebble (16-64 mm), cobble (64-256 mm), and boulder (256-1024 mm), % of canopy cover by riparian vegetation, pH, conductivity, total nitrogen, and total phosphorus) and catchment level variables (such as average slope, % of native forest cover, pasture, agriculture, planted forests, urban areas, mining, water bodies, bare soil, secondary forest cover, and mixed land uses). In addition to the dataset, here we also provide and R code used to investigate the relationship between beta diversity and community size. This code calculates 4 types of beta-diversity metric for each of 100 watersheds (5 streams) in Brazil and Finland. Beta diversity: Sorensen and Bray-Curtis dissimilarity between all pairs. Beta deviation from null models: Raup-Crick (vegan version) and Bray-Curtis beta-deviation (based on the scripts by Chris Catano and Jonathan Myers). These beta diversity metrics are modelled against community size, environmental heterogeneity and spatial extent.
description: This research originated during a joint research project funded by grant #2013/50424-1 (São Paulo Research Foundation, FAPESP) to TS, and by grants #273557 and #273560 to JH and JS (Academy of Finland).