cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7743371
title: Methods of sampling benthic invertebrates in lotic habitats: a spatial and temporal evaluation

description: Abstract Aim We compared the effectiveness of two sampling devices, the Surber sampler and the D-frame net, commonly used in the analysis of invertebrate fauna structure in biomonitoring programs. These programs use the response of benthic invertebrates to assess changes in aquatic ecosystems because they respond quickly to spatial and temporal variations. However, the lack of consensus on the best method of sampling the fauna may reduce the quality of these studies. Methods We evaluated both devices in four structurally different reaches of streams, two in places with preserved riparian vegetation and two occurring in places with many anthropic disturbances. We repeated the analysis at the dry season of two consecutive years. Results The two samplers were equally effective in analyzing the benthic fauna and sensitive enough to identify spatial and temporal variation in the structure of this fauna, influenced by the presence or absence of riparian vegetation, by the position of the reach with this vegetation (upstream or downstream of the reach without vegetation) and the characteristics of the substrate. Conclusions The analyzed fauna structure was similar for the two samplers, but we consider the use of Surber more advantageous and effective because it collects a smaller number of individuals, reducing the time of processing and identifying in the laboratory, and allows a better definition of the area sampled.
DOI: 10.7284/106634
title: GNSS (Global Navigation Satellite System) data collected during research cruise AMAT03RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7743365.v1
title: Biology of non-native species (Rhaphiodon vulpinus Agassiz, 1829) (Characiformes, Cynodontidae) in a cage fish farm area, Upper Paraná River Basin, Brazil

description: Abstract Aim To assess the dietary, populational and parasitological aspects of the non-native wild species Rhaphiodon vulpinus in an area under the influence of cage fish farm, in the Ilha Solteira Reservoir, São Paulo State. Methods Fifty-one specimens of R. vulpinus were captured bimonthly, from September 2014 to August 2016, with gill nets with different mesh sizes, in area surrounding a cage fish farm and area not influenced by this activity. The specimens were quantified and their mass (g) and standard length (cm) measured. The stomachs were analyzed with a stereomicroscope and the food items were quantified using the gravimetric method. The parasites were collected during necropsy and their prevalence, mean intensity of infection and mean abundance were subsequently calculated. Results There were changes in feeding activity regarding the area, with greater numbers of individuals with stomach contents in the areas under the influence of fish farm. However, diet composition did not change between the areas analyzed, with prey represented by small fish, such as Geophagus sveni, and shrimps. In the fish farm area there was also a decrease in abundance and an increase in the total mass of the individuals, while there was no difference in standard length between the areas. In terms of parasitological aspects, low parasitic indexes and the absence of differences between the areas were observed. The first report of the monogenean Notozothecium lamotheargumedoi in the Ilha Solteira reservoir is also presented. Conclusions The cage fish farm affected some aspects of the population and the food intake of R. vulpinus. Furthermore, the parasite-host relationship demonstrated that phylogenetic specificities had a greater effect than aquaculture activity on R. vulpinus in the fish farm area.
DOI: 10.6084/m9.figshare.7743371.v1
title: Methods of sampling benthic invertebrates in lotic habitats: a spatial and temporal evaluation

description: Abstract Aim We compared the effectiveness of two sampling devices, the Surber sampler and the D-frame net, commonly used in the analysis of invertebrate fauna structure in biomonitoring programs. These programs use the response of benthic invertebrates to assess changes in aquatic ecosystems because they respond quickly to spatial and temporal variations. However, the lack of consensus on the best method of sampling the fauna may reduce the quality of these studies. Methods We evaluated both devices in four structurally different reaches of streams, two in places with preserved riparian vegetation and two occurring in places with many anthropic disturbances. We repeated the analysis at the dry season of two consecutive years. Results The two samplers were equally effective in analyzing the benthic fauna and sensitive enough to identify spatial and temporal variation in the structure of this fauna, influenced by the presence or absence of riparian vegetation, by the position of the reach with this vegetation (upstream or downstream of the reach without vegetation) and the characteristics of the substrate. Conclusions The analyzed fauna structure was similar for the two samplers, but we consider the use of Surber more advantageous and effective because it collects a smaller number of individuals, reducing the time of processing and identifying in the laboratory, and allows a better definition of the area sampled.
DOI: 10.6084/m9.figshare.7743374.v1
title: Distribution of aquatic macrophytes along depth gradients in Lajeado Reservoir, Tocantins River, Brazil

description: Abstract Aim The present study investigated the diversity of aquatic macrophytes in the littoral zone of Lajeado Reservoir, Tocantins River. We characterized spatial variations in species richness, composition and abundance along depth gradients. Methods Macrophyte sampling occurred at the end of the dry season (September and October 2014) in four sites of the reservoir. We established transects perpendicular to the shoreline, each 25 m long, divided in 3 sections (plots of 5 x 5 m). Results In total, we recorded 18 taxa of aquatic macrophytes, belonging to nine families and four life forms. Najas microcarpa, Echinodorus tenellus. and Chara sp. were the more frequent and abundant taxa. Considering depth gradients, we recorded 18 taxa in the section closer to the shoreline, 13 in the middle section and 10 in the section more distant to the shoreline. Submerged and emergent species were more frequent and abundant, especially in the section close to the shoreline; epiphytes and free-floating species were rare. Plot species richness (total, emergent and submerged) decreased along the gradient, and a Non-Metric Multidimensional Scaling (NMDS) revealed that the plot close to the shoreline had different composition when compared to adjacent sections. Individual species showed particular behaviors, but most tended to decline in abundance and occurrence along the gradient. Conclusions The present study revealed that small-scale environmental gradients affect the distribution of aquatic plants in Lajeado Reservoir, with greater diversity in habitats close to the shoreline.
DOI: 10.6084/m9.figshare.7743356
title: Structure and ecological aspects of zooplankton (Testate amoebae, Rotifera, Cladocera and Copepoda) in highland streams in southern Brazil

description: Abstract Aim: This study aimed to characterize the zooplankton structure in highland streams in southern Brazil, Pelotas River sub-basin, as well as the respective relationships with the environmental conditions in the different seasons. Methods Zooplankton was collected using a plankton net (68 µm mesh) and concentrated into a volume of 50 ml for later analysis in the laboratory. Sampling occurred during the winter (August 2013), spring (November 2013), summer (February 2014) and autumn (May 2014). Results Rotifers and testate amoebae were the predominant groups. Mean abundance, diversity and evenness varied considerably between the different seasons. The variability of zooplankton was correlated to environmental conditions (conductivity, suspended solids, pH, temperature and dissolved oxygen). Conclusions The seasonal variation of the zooplankton community made it possible to elucidate some questions involving the ecology of these organisms in highland streams in southern Brazil. These unique ecosystems warrant further research and monitoring efforts, including studies of their hydrological patterns, biological diversity and adaptive mechanisms of the zooplankton community.
DOI: 10.6084/m9.figshare.7743359
title: Repercussions of low fructose-drinking water in male rats

description: Abstract Fructose consumption has increased worldwide, and it has been associated with the development of metabolic diseases such as insulin resistance (IR) and steatosis. The aim was to evaluate if lower fructose concentrations may cause pancreatic structural abnormalities, leading to a glucose intolerance without steatosis in male rats. Young male rats orally received 7% fructose solution for 12 weeks. Body weight, food, water, and energy intake were measured. An oral glucose tolerance test (OGTT) was performed. After final experimental period, all rats were anaesthetized and killed. Blood samples were collected for biochemical analyses and organs (liver and pancreas) were processed for morphological analyses. Fructose consumption was not associated with lipid accumulation in liver. However, fructose administration was associated with an increased area under curve from OGTT and an increased percentage of insulin-positive cells, high beta cell mass and reduced pancreatic islet area. Fructose supplementation (7%) did not cause steatosis, but it led to abnormal morphology and function of pancreatic islet cells, contributing for glucose intolerance development. Our findings demonstrate that even low fructose concentrations may cause deleterious effects in animals.
DOI: 10.6084/m9.figshare.7743368.v1
title: Long-term effects of a rural landscape on the structure and trophic organization of a fish assemblage

description: Abstract Aim We investigated the long-term effects of a rural landscape on the structure and trophic organization of a fish assemblage. Methods We compared environmental data and data from fish assemblage structure and trophic organization sampled in a stream located in a rural area, within a time gap of 20 years. Results We observed only punctual changes in the environmental variables and fish structure, which may not be related to the rural landscape. In fish diet, insectivory remained predominant in all sample periods. However, when we analyzed the groups of hexapods consumed by the fish species, we found a substitution of Ephemeroptera and Trichoptera by Diptera over time. Conclusions Although the fish assemblage structure was not affected, the insectivore diet analysis showed that the stream stretch could be in an ongoing process of environmental quality loss, once the simplification in the macroinvertebrates assemblage structure over time is indicative of environmental degradation.
DOI: 10.7284/106635
title: GNSS (Global Navigation Satellite System) data collected during research cruise AMAT03RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106642
title: Gravimeter data collected during research cruise AMAT03RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7743353
title: Genesis and Classification of Nitisols from Volcano-Sedimentary Lithology in Northeastern Brazil

description: ABSTRACT On the southern coast of Pernambuco State (PE), Brazil, lithotypes of the Cabo Basin (volcanic and sedimentary rocks), in association with the relief, allow the determination of the dynamics of the formation of Nitossolos Háplicos (Nitisols), including those with high levels of exchangeable aluminum. The objective of this study was to evaluate the influence of lithological diversity (basalt and sedimentary siliciclastic rocks) on the morphological, physical, chemical, and mineralogical properties of Nitossolos Háplicos along a slope (P1-summit, P2-backslope, P3-footslope) on the southern coast of PE, in order to consider its genesis and the relation of soil properties to adjacent environments and to evaluate its framing within the Brazilian Soil Classification System (SiBCS). The interaction of lithology/soil permeability and climate indicate significant differences in the mineralogical composition and dynamics of soil chemical elements. The profiles P1 and P2 are subject to monosialitization, ferralitization, and alitization processes. All profiles showed high Fe contents (ferric soils) and clay fractions, consisting primarily of kaolinite, goethite, hematite, and gibbsite, as well as quartz and feldspar in the sand and silt fractions. However, smectite minerals (P3) are probably inherited from the sedimentary source material. In the conglomerate samples, under P3, biotite, muscovite, and plagioclase were identified. Allytic characteristics (P3) are probably associated with the weathering of aluminous smectite minerals. These properties distinguish these soils from adjacent Nitossolos and other Nitossolos in Brazil. For the classification of soils according to SiBCS, considering the high levels of Fe and Al, Nitossolo Háplico distroférrico (P1 and P2) and Nitossolo Háplico alitiférrico (P3) are suggested, and according to the World Reference Base of Soils (WRB), the soils are classified as Ferritic Nitisols.
DOI: 10.6084/m9.figshare.7743359.v1
title: Repercussions of low fructose-drinking water in male rats

description: Abstract Fructose consumption has increased worldwide, and it has been associated with the development of metabolic diseases such as insulin resistance (IR) and steatosis. The aim was to evaluate if lower fructose concentrations may cause pancreatic structural abnormalities, leading to a glucose intolerance without steatosis in male rats. Young male rats orally received 7% fructose solution for 12 weeks. Body weight, food, water, and energy intake were measured. An oral glucose tolerance test (OGTT) was performed. After final experimental period, all rats were anaesthetized and killed. Blood samples were collected for biochemical analyses and organs (liver and pancreas) were processed for morphological analyses. Fructose consumption was not associated with lipid accumulation in liver. However, fructose administration was associated with an increased area under curve from OGTT and an increased percentage of insulin-positive cells, high beta cell mass and reduced pancreatic islet area. Fructose supplementation (7%) did not cause steatosis, but it led to abnormal morphology and function of pancreatic islet cells, contributing for glucose intolerance development. Our findings demonstrate that even low fructose concentrations may cause deleterious effects in animals.
DOI: 10.6084/m9.figshare.7743353.v1
title: Genesis and Classification of Nitisols from Volcano-Sedimentary Lithology in Northeastern Brazil

description: ABSTRACT On the southern coast of Pernambuco State (PE), Brazil, lithotypes of the Cabo Basin (volcanic and sedimentary rocks), in association with the relief, allow the determination of the dynamics of the formation of Nitossolos Háplicos (Nitisols), including those with high levels of exchangeable aluminum. The objective of this study was to evaluate the influence of lithological diversity (basalt and sedimentary siliciclastic rocks) on the morphological, physical, chemical, and mineralogical properties of Nitossolos Háplicos along a slope (P1-summit, P2-backslope, P3-footslope) on the southern coast of PE, in order to consider its genesis and the relation of soil properties to adjacent environments and to evaluate its framing within the Brazilian Soil Classification System (SiBCS). The interaction of lithology/soil permeability and climate indicate significant differences in the mineralogical composition and dynamics of soil chemical elements. The profiles P1 and P2 are subject to monosialitization, ferralitization, and alitization processes. All profiles showed high Fe contents (ferric soils) and clay fractions, consisting primarily of kaolinite, goethite, hematite, and gibbsite, as well as quartz and feldspar in the sand and silt fractions. However, smectite minerals (P3) are probably inherited from the sedimentary source material. In the conglomerate samples, under P3, biotite, muscovite, and plagioclase were identified. Allytic characteristics (P3) are probably associated with the weathering of aluminous smectite minerals. These properties distinguish these soils from adjacent Nitossolos and other Nitossolos in Brazil. For the classification of soils according to SiBCS, considering the high levels of Fe and Al, Nitossolo Háplico distroférrico (P1 and P2) and Nitossolo Háplico alitiférrico (P3) are suggested, and according to the World Reference Base of Soils (WRB), the soils are classified as Ferritic Nitisols.
DOI: 10.6084/m9.figshare.7743356.v1
title: Structure and ecological aspects of zooplankton (Testate amoebae, Rotifera, Cladocera and Copepoda) in highland streams in southern Brazil

description: Abstract Aim: This study aimed to characterize the zooplankton structure in highland streams in southern Brazil, Pelotas River sub-basin, as well as the respective relationships with the environmental conditions in the different seasons. Methods Zooplankton was collected using a plankton net (68 µm mesh) and concentrated into a volume of 50 ml for later analysis in the laboratory. Sampling occurred during the winter (August 2013), spring (November 2013), summer (February 2014) and autumn (May 2014). Results Rotifers and testate amoebae were the predominant groups. Mean abundance, diversity and evenness varied considerably between the different seasons. The variability of zooplankton was correlated to environmental conditions (conductivity, suspended solids, pH, temperature and dissolved oxygen). Conclusions The seasonal variation of the zooplankton community made it possible to elucidate some questions involving the ecology of these organisms in highland streams in southern Brazil. These unique ecosystems warrant further research and monitoring efforts, including studies of their hydrological patterns, biological diversity and adaptive mechanisms of the zooplankton community.
DOI: 10.7284/106633
title: Magnetometer data collected during research cruise AMAT03RR using a Marine Magnetics SeaSPY instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7743329
title: Rates of Nicosulfuron Applied in Glyphosate-Tolerant and Sulfonylurea-Tolerant Soybean

description: ABSTRACT: STS cultivars tolerate up to four times higher rates of chlorimuron than those recommended for non-tolerant cultivars, without significant damage. However, few studies position the selectivity of nicosulfuron in STS cultivars. The aim of this study was to assess the selectivity of rates of the herbicide nicosulfuron applied in the post-emergence (V4) of RR/STS soybean. The experiments were conducted in the 2015/16 and 2016/17 seasons in Piracicaba, SP. In the 2016/17 season, the experiment was also conducted in Palotina, PR. Treatments consisted of six rates of the herbicide nicosulfuron (0, 50, 100, 150, 200, and 250 g a.i. ha-1). The experimental design was a randomized block design with four replications. The symptoms of injury were assessed at 7, 14, 21, and 28 days after application, as well as the assessment of variables related to the agronomic performance (plant height, number of pods per plant, yield, and one thousand-grain weight). The data were submitted to regression analysis (p&lt;0.05). The estimated rates reduced yield by 5% in relation to the rate 0 and were between 57.79 and 68.37 g a.i. ha-1. In general, the RR/STS soybean is tolerant to the application of nicosulfuron up to 57.79 g a.i. ha-1 when considering the estimated rates. Therefore, the RR/STS soybean is tolerant to the application of nicosulfuron up to 50 g a.i. ha-1, according to the applied rates.
DOI: 10.6084/m9.figshare.7743320
title: Reduction Potential of RuIII-Based Complexes with Potential Antitumor Activity and Thermodynamics of their Hydrolysis Reactions and Interactions with Possible Biological Targets: a Theoretical Investigation

description: In this article density functional theory (DFT)-based calculations were employed to investigate the electrochemistry of the antitumor ruthenium complexes trans-tetrachloro(dimethylsulfoxide)imidazole ruthenate(III) (NAMI-A) and trans-[tetrachlorobis(1.-indazole)ruthenate(III)] (KP1019), their hydrolysis products as well as their interactions with biological S-donors and N-donors targets as cysteine, glutathione and guanine nucleobase. The compounds exhibit different electrochemical behavior upon hydrolysis. While the reduction potential of NAMI-A increases up to 0.8 V upon hydrolysis, the reduction potential of KP1019 remains almost constant after the first hydrolysis. NAMI-A and KP1019 complexes have thermodynamic preference to be reduced prior to undergoing hydrolysis and, strong preference to undergo successive hydrolysis instead of interacting with the S-donor and N-donor ligands. Interaction with S-donor ligands in the unprotonated form is highly unfavorable, with the free energy in solution (ΔGsol) ≥ 18 kcal mol-1. For both complexes, the interaction with the guanine and glutathione are of the same magnitude (ΔGsol ca. –0.6 kcal mol-1) meaning that these ligands can compete for binding to the metallodrug.
DOI: 10.7284/106636
title: Meteorological Station data collected during research cruise AMAT03RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7743311
title: Temperature Dependence of Electrical Resistance in Ge-Sb-Te Thin Films

description: Nowadays, the Ge-Sb-Te system is studied extensively for use in the field of both electrical and optical non-volatile memories. The key of this application is based on the changes in the physical properties (electrical conductivity or refractive index) of these films as a result of structural transformation between amorphous and crystalline states. Both states are highly stable and it is relatively easy to change between them when they are prepared as thin films. In this work, structural and electrical behaviours with the temperature of thin films with compositions Ge13Sb5Te82, Ge1Sb2Te4, Ge2Sb2Te5, Ge1Sb4Te7 and Sb70Te30 (atomic fraction) were studied. Films were obtained by pulsed laser deposition (PLD) using a pulsed Nd:YAG laser (λ = 355 nm) and they were structurally characterized by X-ray diffraction. Temperature dependence of electrical resistance was studied for these films from room temperature to 520 K at a heating rate about 3 K/min. During crystallization, their electrical resistance falls several orders of magnitude in a narrow temperature range. The electrical conduction activation energies of the amorphous and crystalline states and the crystallization temperature were determined. The crystallization products were characterized by X-ray diffraction. The results were compared with those obtained by other authors.