cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gb5mkkwsh
title: Data for: Aggressive hosts are undeterred by a cuckoo's hawk mimicry, but probably make good foster parents

description: Parasites face a trade-off if the highest quality hosts are also most
 resistant to exploitation. For brood parasites, well-defended host nests
 may be both harder to parasitize and harder to predate, leading to better
 survival of parasitic chicks. This trade-off could be accentuated if
 brood-parasitic adaptations to reduce front-line defences of hosts, such
 as mimicry of hawks by Cuculus cuckoos, do not deter hosts which
 aggressively mob raptors. Here we investigate the costs and benefits to
 the African cuckoo (Cuculus gularis) of specializing on a highly
 aggressive host species, the fork-tailed drongo (Dicrurus adsimilis).
 Field experiments showed that drongos strongly attacked and mobbed both
 cuckoo and hawk models, implying that hawk mimicry does not deter
 front-line defences against African cuckoos. Attacks on cuckoo and hawk
 models generally declined after the egg stage but attacks on snake models
 sharply increased, suggesting drongos may treat hawks more like cuckoos
 than predators. We suggest that the cost to cuckoos of parasitizing an
 aggressive host may be alleviated by subsequent benefits to their
 offspring, since drongo nests survived better than nests of other species
 with similar nesting ecology. These results are indicative of a trade-off
 between host quality and susceptibility for a brood parasite.
description: We presented models of three species at drongo nests in 2019: an
 African cuckoo, a little sparrowhawk (Accipiter minullus), and a
 ring-necked dove (Streptopelia capicola). For each species we used two
 different models, which were 3D-printed in polylactic acid, and painted.
 In 2021, we repeated presentations of the hawk and dove models, alongside
 a rubber snake snake (Supkeyer 130 cm). The models were presented in a
 random order with an hour between trials. Prior to each trial, we set up a
 video recorder (Sony CX280 Full HD Handycam) in a blind 10 m from the
 nest, and tied the model to a branch approximately 2 m from the nest.
 Trials were filmed and lasted for 5 minutes, beginning when a drongo came
 within 5 m of the model. We quantified mobbing dives
 towards each model from video recordings. Mobs were defined as close
 swoops accompanied by a short sound, and sometimes involved direct contact
 with the model . As it was not possible to count blind to treatment type,
 mobs in a subset of videos were independently counted by another observer
 without prior knowledge of the experiment. We also
 checked nests of fork-tailed drongos, dark-capped bulbuls (Pycnonotus
 tricolor) and tchagra bush-shrikes (Tchagra australis and Tchagra
 senegalus) for predation every three days, +/- 1 day.
 Methods for processing the data: All analyses were carried out in
 R 4.1.3, see RMarkdown document for details
description: Excel csv files and a html document.
DOI: 10.5061/dryad.573n5tb9v
title: Data from: Evolution of cold tolerance in the highly stress tolerant samphires and relatives (Salicornieae: Amaranthaceae)”

description: Low temperature constitutes one of the main barriers to plant
 distributions, confining many clades to their ancestrally tropical biome.
 However, recent evidence suggests that transitions from tropical to
 temperate biomes may be more frequent than previously thought. Here, we
 study the evolution of cold and frost tolerance in the globally
 distributed and highly stress-tolerant Salicornieae (Salicornioideae,
 Amaranthaceae s.l.). We first generate a phylogenetic tree comprising
 almost all known species (85-90%), using newly generated (n = 106) and
 published nuclear-ribosomal and plastid sequences. Next, we use
 geographical occurrence data to document in which clades and geographical
 regions cold-tolerant species occur and reconstruct how cold tolerance
 evolved. Finally, we test for correlated evolution between frost tolerance
 and the annual life form. We find that frost tolerance has evolved
 independently in up to four Northern Hemisphere lineages but that annuals
 are no more likely to evolve frost tolerance than perennials, indicating
 the presence of different strategies for adapting to cold environments.
 Our findings add to mounting evidence for multiple independent
 out-of-the-tropics transitions among close relatives of flowering plants
 and raise new questions on the ecological and physiological mechanism(s)
 of adaptation to low temperatures in Salicornieae.
description: Data associated with this research article:
 Cousins-Westerberg, R., Dakin, N., Schat, L., Kadereit, G. and
 Humphreys, A.M. 2023. Evolution of cold tolerance in the highly
 stress-tolerant samphires and relatives
 (Salicornieae: Amaranthaceae). Botanical Journal of the Linnean
 Society, https://doi.org/10.1093/botlinnean/boad009
DOI: 10.5061/dryad.fttdz08wb
title: Evolutionary footprints of cold adaptation in arctic-alpine Cochlearia (Brassicaceae) – evidence from freezing experiments and electrolyte leakage

description: As global warming progresses, plants may be forced to adapt to drastically
 changing environmental conditions. Arctic-alpine plants have been among
 the first to experience the effects of climate change. As a result, cold
 acclimation and freezing tolerance may become increasingly crucial for the
 survival as winter warming events and earlier snowmelt will cause
 increased exposure to occasional frost. The tribe Cochlearieae in the
 mustard family (Brassicaceae) offers an instructive system for studying
 cold adaptation in evolutionary terms, as the two sister genera
 Ionopsidium and Cochlearia are distributed among different ecological
 habitats throughout the European continent and the far north into
 circumarctic regions. By applying an electrolyte leakage assay to leaves
 obtained from plants cultivated under controlled temperature regimes in
 growth chambers, the freezing tolerance of different Ionopsidium and
 Cochlearia species was assessed measuring lethal freezing temperature
 values (LT50 and LT100), thereby allowing for a comparison across
 different species and accessions in their responses to cold. We
 hypothesized that, owing to varying selection pressures, geographically
 distant species would differ in freezing tolerance. Despite Ionopsidium
 occurring under warm and dry Mediterranean conditions and Cochlearia
 species distributed often at cold habitats, all accessions exhibited
 similar cold responses. The results may indicate that physiological
 adaptations of primary metabolic pathways to different stressors, such as
 salinity and drought, may confer an additional tolerance to cold; this is
 because all these stressors induce osmotic challenges.
description: Electrolyte leakage analysis of single leafs.
description: Data can be accessed using microsoft word office and excel.
DOI: 10.5061/dryad.9ghx3ffkz
title: Data for: Modeling the distribution of the endangered Jemez Mountains salamander (Plethodon neomexicanus) in relation to geology, topography, and climate

description: The Jemez Mountains salamander (Plethodon neomexicanus; hereafter JMS) is
 an endangered salamander restricted to the Jemez Mountains in
 north-central New Mexico, United States. This strictly terrestrial species
 requires moist surface conditions for mating and foraging. Threats to its
 current habitat include fire suppression and ensuing severe fires, changes
 in forest composition, habitat fragmentation, and climate change. Forest
 composition changes resulting from reduced fire frequency and
 increased tree density suggest that its current aboveground habitat does
 not mirror its historically successful habitat regime. We hypothesized
 that geology and topography might play a significant role in the current
 distribution of the salamander. We modeled the distribution of
 the JMS using a machine learning algorithm to assess how geology,
 topography, and climate variables influence its distribution. Our habitat
 suitability map reveals low uncertainty in model predictions, and we found
 slight discrepancies between the designated critical habitat and the most
 suitable areas for the JMS. Because geological features are important to
 its distribution, we recommend that geological and topographical data are
 considered, both during survey design and in the description of localities
 of JMS records once detected.
description: We used ten variables in our
 distribution models [geologic: (1) unit classification based on 1:24,000
 scale geologic maps produced by New Mexico Bureau of Geology and Mineral
 Resources, New Mexico Institute of Mining and Technology, (2) distance to
 the boundary of mapped geologic contacts within the Valles caldera region;
 topographic: (3) high-resolution elevation (10 m), (4) slope, (5)
 topographic characterization (i.e., curvature; change in slope, first
 derivative) from a LiDAR-derived digital elevation model (DEM); climatic:
 (6) total precipitation in summer, (7) total precipitation in winter, (8)
 maximum temperature in winter, (9) minimum temperature in winter, (10)
 minimum temperature in summer]. The climate variables were derived
 specifically for Southwestern United States from PRISM (PRISM Climate
 Group, Oregon State University, https://prism.oregonstate.edu, data created 11 Sep 2013, accessed 29 Jul 2019) and are based on climate normals (1981-2010). Climate data that was at 800m resolution, and when needed (50% of our variables were downscaled), was downscaled to match our intended 5 m fine scale for our analysis by following the methodology of Lee et al. (2014). Lee, T. R., De Wekker, S. F. J., & Wofford, J. E. B. (2014). Downscaling Maximum Temperatures to Subkilometer Resolutions in the Shenandoah National Park of Virginia, USA. Advances in Meteorology, 2014, 1–9. https://doi.org/10.1155/2014/594965
description: ESRI ArcGIS Pro QGIS (open-source alternative
 to ArcGIS) R with appropriate packages
DOI: 10.5061/dryad.rxwdbrvc7
title: Data from: Host plant height explains the effect of nitrogen enrichment on arbuscular mycorrhizal fungal communities

description: Nitrogen (N) enrichment is widely known to affect the root-associated
 arbuscular mycorrhizal fungal (AMF) community in different ways, for
 example, via altering soil properties and/or shifting host plant
 functional traits. However, empirical knowledge of their relative
 importance is still lacking. Using a long-term N addition experiment, we
 measured the AMF community taxonomic and phylogenetic diversity at the
 single plant species (roots of 15 plant species) and plant community
 (mixed roots) levels. We also measured four functional traits of 35 common
 plant species along the N addition gradient. We found divergent responses
 of AMF diversity to N addition for host plants with different innate
 heights (i.e., plant natural height under unfertilized treatment).
 Furthermore, our data showed that species-specific responses of AMF
 diversity to N addition were negatively related to the change in maximum
 plant height. When scaling up to the community level, N addition affected
 AMF diversity mainly by increasing the maximum plant height, rather than
 altering soil properties. Our results highlight that plant height drives
 the AMF community dynamics under nitrogen enrichment at both species and
 community levels, thus providing important implications for understanding
 the response of AMF diversity to anthropogenic nitrogen deposition.
description: <em><strong>Individual root
 sampling</strong></em> At the end of
 August 2017 (7 years after the start of the experiment), we sampled roots
 from 15 common plant species occurring in all N addition treatments. For
 logistic reasons, we sampled only 4 plots per N addition treatment (16
 plots in total).  We carefully washed the samples to separate the
 soil around the roots, and selected the fine roots (diameter &lt; 2
 mm) of 6 individuals or 1
 g of each selected plant species in each plot and mixed as one root
 sample. This resulted in a total of 240 individual root samples collected
 for AMF DNA extraction, which were brought back to the laboratory within
 24h and stored at −80°C. <em><strong>Mixed-root
 sampling</strong></em>
 At the end of August 2020, 6
 plots of each N addition level (24 plots in total) were samples to
 investigate AMF community structure at the plant community level. Soil
 cores (3.8 cm diameter; 25 cm depth) were taken randomly at 5 locations
 within each plot and mixed into a single composite sample. Fine roots were
 carefully separated from each soil sample and washed. This resulted in a
 total of 24 mixed root samples, which were brought back to the laboratory
 within 24h and stored at −80°C for DNA extraction. The remaining soil
 samples were air-dried, sieved (2 mm) and stored at 4 °C to measure soil properties (see
 below).
DOI: 10.5061/dryad.wstqjq2pz
title: Autopolyploid establishment depends on life history strategy and the mating outcomes of clonal architecture

description: Polyploidy is a significant component in the evolution of many taxa,
 particularly plant groups. However, new polyploids face substantial
 fitness disadvantages due to a lack of same-cytotype mates, and the
 factors promoting or preventing polyploid establishment in natural
 populations are often unclear. We develop spatially explicit agent-based
 simulation models to test the hypothesis that a perennial life history and
 clonal propagation facilitate the early stages of polyploid establishment
 and persistence. Our models show that polyploids are more likely to
 establish when they have longer lifespans than diploids, especially when
 self-fertilization rates are high. Polyploids that combine sexual and
 clonal reproduction can establish across a wide range of life histories,
 but their success is moderated by clonal strategy. By tracking individuals
 and mating events we reveal that clonal architecture has a substantial
 impact on the spatial structure of the mixed diploid-polyploid population
 during polyploid establishment: altering patterns of mating within or
 between cytotypes via geitonogamous self-fertilization, the mechanisms
 through which polyploid establishment proceeds, and the final composition
 of the polyploid population. Overall, our findings provide novel insight
 into the role of clonal structure in modulating the complex relationship
 between polyploidy, perenniality, and clonality; and offer testable
 predictions for future empirical work.
DOI: 10.5061/dryad.47d7wm3h3
title: Safety of ChAdOx1 nCoV-19 vaccination in patients with end-stage renal disease on hemodialysis

description: This dataset was the minimal dataset of the research article entitle
 'Safety of ChAdOx1 nCoV-19 vaccination in patients  with
 end-stage renal disease on hemodialysis'.  The study aims to
 investigate the localized and systemic adverse effects (AEs) within
 30-days after the first dose of ChAdOx1 nCoV19 (Oxford-AstraZeneca)
 vaccination in end-stage renal disease (ESRD) patients receiving
 hemodialysis (HD). The first dataset is the raw data for logistic
 regression analyses examining the risk factors in association with AEs,
 another dataset  contains the second- and the seventh- day
 incidences of various AEs depicted in bar graphs. It comprises variables
 recording the status of patient-reported local and systemic AEs in
 questionnaire on the second and seventh days after vaccination as well as
 patients' baseline demographic and clinical characteristics.
description: This study enrolled 270 patients with ESRD receiving HD at a
 medical center in southern Taiwan in 2021.Patients' demographic and
 clinical characteristics were collected by reviewing medical charts. The
 self-reported localized and systemic AEs were collected via a face-to-face
 survey on the 2nd- and 7th- day after the first dose of ChAdOx1 nCoV19
 vaccination. The variables recording AEs status were dichotomized,
 representing with or without the symptoms. Personal identification number
 were deleted in this dataset.
description: The dataset was saved as MS-Excel format (*.xlsx).
DOI: 10.25349/d9x032
title: Data from: Vacuole dynamics and popping-based motility in liquid droplets of DNA

description: Liquid droplets of biomolecules play key roles in organizing cellular
 behavior and are also technologically relevant, yet physical studies of
 dynamic processes of such droplets have generally been lacking. Here, we
 investigate and quantify the dynamics of formation of dilute internal
 inclusions, i.e. vacuoles, within a model system consisting of liquid
 droplets of DNA `nanostar' particles. When acted upon by DNA-cleaving
 restriction enzymes, these DNA droplets exhibit cycles of appearance,
 growth, and bursting of internal vacuoles. Analysis of vacuole growth
 shows their radius increases linearly in time. Further, vacuoles pop upon
 reaching the droplet interface, leading to droplet motion driven by the
 osmotic pressure of restriction fragments captured in the vacuole. We
 develop a model that accounts for the linear nature of vacuole growth, and
 the pressures associated with motility, by describing the dynamics of
 diffusing restriction fragments. The results illustrate the complex
 non-equilibrium dynamics possible in biomolecular condensates.
description: Dataset collection is described fully in the associated
 paper.
description: This data repository contains an example of image analysis code
 that is used to measure droplet and vacuole radii in the associated paper,
 "Vacuole Dynamics and Popping-based Motility in Liquid Droplets of
 DNA," by Saleh et al. The repository
 contains:<br>-An example image of a droplet containing a vacuole
 (this image is shown in Fig. 2A of the paper) -Code
 carrying out an example image-analysis calculation, using Mathemetica, and
 following principles described in the paper and its supplement. The code
 is fully commented on and referenced to relevant equations in the
 paper -The same Mathematica code, but uploaded as a pdf
 for accessibility.
DOI: 10.15468/dl.e3ushj
title: Occurrence Download

description: A dataset containing 3157169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia, Europe)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pararge aegeria"
 ]
}

 The dataset includes 3157169 records from 4057 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003173-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/hsnz7f
title: Replication Data for: Revisiting Oblivious Top-k Selection with Applications to Secure k-NN Classification
title: ppknn

description: The code implements a homomorphic Top-k selection algorithm and an application to secure k-nearest neighbors classification. More specifically, our method applies a new truncation technique to Batcher's odd-even sorting algorithm. All of this is done in an oblivious manner, because the underlying data is encrypted. Our experimental results show a speedup of up to 47 times (not accounting for difference in CPU) compared to a previous secure k-nearest neighbors classifier.
DOI: 10.60656/3011bc8cf9d143ad
title: Custom collection of categorize data from Neumayer Station between 2 Jan 2024 and 25 Apr 2025
DOI: 10.57703/ce-z5p8f
title: C38 - FAMU-FSU College of Engineering Submission

description: Scanning white light interferometry measurements using Bruker Countour GT at 20x and 50x magnification.
DOI: 10.24414/rob-euref-unpg00ita
title: GNSS data of UNPG00ITA, Perugia, Italy

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.26093/cds/vizier.19469016
title: CEERS Key Paper. IV. JWST & HST data

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' CEERS Key Paper. IV. A triality in the nature of HST-dark galaxies.' (bibcode: 2023ApJ...946L..16P)
DOI: 10.26093/cds/vizier.19469035
title: High-z galaxies from JWST ERO

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' Physical characterization of early galaxies in the Webb's first deep field SMACS J0723.3-7323.' (bibcode: 2023ApJ...946L..35M)
DOI: 10.26093/cds/vizier.19469040
title: Galaxies in JWST obs. of SMACS J0723.3-7327

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' PAH emission from star-forming galaxies in JWST mid-infrared imaging of the lensing cluster SMACS J0723.3-7327.' (bibcode: 2023ApJ...946L..40L)
DOI: 10.26093/cds/vizier.19469006
title: JWST NIRSpec & MIRI sp. of the BD* SIPS J1256-1257B

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' The JWST Early-release Science Program for Direct Observations of Exoplanetary Systems II: a 1 to 20um spectrum of the planetary-mass companion VHS 1256-1257 b.' (bibcode: 2023ApJ...946L...6M)
DOI: 10.26093/cds/vizier.19329006
title: Young stars in the Galactic Center

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' The young stars in the Galactic Center.' (bibcode: 2022ApJ...932L...6V)
DOI: 10.26093/cds/vizier.19460098
title: HST/COS obs. of main-sequence FGKM dwarfs

description: VizieR online Data Catalogue associated with article published in journal Astrophysical Journal with title ' Disentangling stellar and airglow emission lines from Hubble Space Telescope (HST) Cosmic Origins Spectrograph (COS) spectra.' (bibcode: 2023ApJ...946...98C)
DOI: 10.15468/dl.xxgbaw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tapirus indicus Desmarest, 1819)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016260-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy9hpd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tapirus indicus Desmarest, 1819)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016261-250525065834625/datasets/export for details.