cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gutxgm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Entyloma calendulae",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006459-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.przzum
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Entyloma calendulae",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006461-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nahbtv
title: Occurrence Download

description: A dataset containing 701956 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.25_1"
 ]
}

 The dataset includes 701956 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001029-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11400220
title: Datasets of paper "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation"

description: These are the datasets, processing scripts, and plots that are used in the paper titled "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation" submitted to the JAMES.
DOI: 10.5281/zenodo.11400221
title: Datasets of paper "Improving the performance of a mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation" submitted to the JAMES

description: These are the datasets, processing scripts, and plots that are used in the cut-cell paper submitted to the JAMES.
DOI: 10.5281/zenodo.11407971
title: Datasets of paper "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation"

description: These are the datasets, processing scripts, and plots that are used in the paper titled "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation" submitted to the JAMES.
DOI: 10.5281/zenodo.13988836
title: Datasets of paper "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation"

description: These are the datasets, processing scripts, and plots that are used in the paper titled "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation" submitted to the JAMES.
DOI: 10.5281/zenodo.13988871
title: Datasets of paper "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation"

description: These are the datasets, processing scripts, and plots that are used in the paper titled "Improving the performance of a reduced-order mass-consistent model for urban environments and complex terrain with a higher-order geometrical representation" submitted to the JAMES.
DOI: 10.17909/y22z-yt33
title: Saturnian Irregular Satellites
DOI: 10.15468/dl.g96w3a
title: Occurrence Download

description: A dataset containing 1758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 1758 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001048-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuea3m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-9939.0",
 "Geometry POLYGON((-114.29304 32.10433,-107.7578 32.10433,-107.7578 35.60068,-114.29304 35.60068,-114.29304 32.10433))",
 "TaxonKey is Pennisetum setaceum (Forssk.) Chiov."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001049-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv2cv3
title: Occurrence Download

description: A dataset containing 1030589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sambucus australis Cham. & Schltdl., Sambucus javanica Reinw. ex Blume, Sambucus lanceolata R.Br., Sambucus nigra L., Sambucus peruviana Kunth, Sambucus racemosa L., Sambucus williamsii Hance)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 1030589 records from 3248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001030-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vczdfck7k4.1
title: LINF_360041200

description: mitoribosomal protein mS47
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zjwhhpzgvm.1
title: Phosphate Depletion in Insulin-Insensitive Skeletal Muscle Drives AMPD Activation and Sarcopenia in Chronic Kidney DIsease

description: The original images and blots of the manuscript Phosphate Depletion in Insulin-Insensitive Skeletal Muscle Drives AMPD Activation and Sarcopenia in Chronic Kidney DIsease
DOI: 10.17632/8tg9bv7xp6.1
title: LINF_020010400

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7x7x9fygwt.1
title: LINF_020010600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xvm66mhhfh.1
title: LINF_290033800

description: polynucleotide adenylyltransferase | poly(A) polymerase | PAP1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yrffdbpjcx.1
title: LINF_360042200

description: Bromodomain factor 3 | BDF3
Leishmania infantum (strain JPCM5)
DOI: 10.17632/39zndn2c2c.1
title: LINF_360042000

description: mitoribosomal protein mL42
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xw856n3vsd.1
title: LINF_020011400

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jjpcj7fy6t.1
title: Night-haze: hazy images dataset with localized light sources for benchmarking of dehazing methods

description: Here we proposed two datasets for benchmarking single-image dehazing (haze removal) methods in both day and night conditions: "Night-haze" and "Night-haze-ext".

"Night-haze" features:
- real hazy, haze-free images and its corresponding depth maps, taken indoors;
- 2 scenes – one with simpler objects and the other with more complex objects and with the presences of localized light sources;
- 4 haze density levels – from absent to heavy haze;
- 4 lighting levels – from sufficient to weak lighting (which are try to simulate day and nighttime lighting);
- 32 images and depth maps in total.

"Night-haze-ext" has similar features, but:
- increased depth of scenes;
- increased the number of haze density levels to 8; 
- thermal images in addition to regular (visible) images and depth maps;
- 64 images and depth maps, 63 thermal images in total.

Folders description:
- night-haze:
 - jpg: visible images, collected using Canon 2000d in .jpg format;
 - raw: visible images, collected using Canon 2000d in .cr2 format;
 - kinnect: files, collected using Microsoft Kinnect v2;
 - color: visible images in .npy* format;
 - depth: depth map in .npy* format;
 - realsense: files, collected using Intel RealSence d435i;
 - color: visible images in .npy* format;
 - depth: depth map in .npy* format;
- night-haze-ext: similar to night-haze, but:
 - kinnect: files in .png format in "color" and "depth" folders;
 - realsense: files in .png format in "color" and "depth" folders;
 - infrared: files, collected using Flir C2;
 - color: visible images in .png format;
 - spectrum: infrared images in .png format;
* - numpy’ arrays format (https://numpy.org/doc/stable/reference/generated/numpy.load.html) 

Details about our motivation, descriptions of datasets collection processes as well as some experimental results can be found in the articles:
- Night-haze: "Filin, A., Kopylov, A., Seredin, O., & Gracheva, I. (2022, July). Hazy images dataset with localized light sources for experimental evaluation of dehazing methods. In The 6th International Workshop on Deep Learning in Computational Physics (p. 19)." (https://pos.sissa.it/429/019/pdf)
- Night-haze-ext: article in progress.

Please, use night-haze.bib and night-haze-ext.bib (see Files section) for the corresponding references.
DOI: 10.17632/kdsgskv76c.1
title: LINF_110011800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/m6rd76bsnc.1
title: Prediction of the first-pass metabolism of a drug after oral intake based on structural parameters and physicochemical properties

description: All of the data associated with analyzing the descriptors, developing equations and modeling, and validation the models of the research project entitled "Prediction of the first-pass metabolism of a drug after oral intake based on structural parameters and physicochemical properties"
DOI: 10.17632/3v79sh9njf.1
title: Data from two experiments investigating the functional locus of size-space interactions

description: This is the raw data from two experiments in which we investigated the functional locus of interactions between the processing of physical size and the processing of space. We have submitted a manuscript describing the results of the two experiments for publication, but not yet received an editorial decision. Here is the abstract from our manuscript: Previous studies revealed an S-R compatibility effect between physical stimulus size and response location, with faster left (right) responses to small (large) stimuli, respectively, as compared to the reverse assignments. Here, we investigated the locus of interactions between the processing of size and spatial locations. In Experiment 1, we explored whether stimulus size and stimulus location interact at a perceptual level of processing when responses lack spatiality. The stimuli varied on three feature dimensions (color, size, location), and participants responded vocally to each feature in a separate task. Most importantly, we failed to observe a size-location congruency effect in the color-naming task where S-R compatibility effects were excluded. In Experiment 2, responses to color were spatial, that is, keypresses with the left and right hand. With these responses there was a congruency effect. In addition we tested the interaction of the size-location compatibility effect with the Simon effect, for which response-selection is known as the origin. We observed an interaction between the two effects only with a subsample of participants with slower RTs and a larger size-location compatibility effect in a control condition. Together, the results suggest that the size-location compatibility effect arises at the response selection stage. An extended leaky, competing accumulator model with independent staggered impacts of stimulus size and stimulus location on response selection fits the data of Experiment 2 and specifies how the size-location compatibility effect and the Simon effect can arise during response selection.
DOI: 10.17632/6pt94yk68b.1
title: Docking of spike protein of different coronaviruses with dengue virus serotype 2 envelope antibodies

description: Each folder contains HDOCK and CLUSPRO docking files.
DOI: 10.17632/94hc43vgct.1
title: LINF_120006800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t8ykvvbhy4.1
title: Charge Trapping in SiO₂ Substrate during Electron Beam Deposition of CaF₂ Thin Films

description: This dataset supports the study of charge trapping phenomena in Si/SiO₂ substrates during the electron beam deposition of CaF₂ thin films of varying thicknesses (50-277 nm). The research hypothesis suggests that electron beam deposition induces charge trapping in the defect centers of the SiO₂ layer which is observed as distinct photoelectron (PE) peaks in the PE spectra of Si/SiO₂/CaF₂ structures. PE spectra were collected under high vacuum conditions using ultraviolet photons (4.2–6.2 eV) to measure electron emission. The results reveal distinct electron trapping peaks in the SiO₂ substrate, with their intensity varying depending on the thickness of the CaF₂ films and the electron irradiation dose.

The dataset includes:
1. X-Ray diffraction (XRD) patterns of CaF₂ films and SiO₂/Si substrate obtained in the grazing incidence mode.
2. Atomic force microscopy (AFM) characterization of CaF₂ film on Si/SiO₂ substrate: surface image of the film and its cross-section.
3. PE data:
3.1. PE spectra of CaF₂ films with varying thicknesses, as well as spectra of the bare Si/SiO₂ substrate (Fig.4).
3.2. PE spectra of the bare Si/SiO₂ substrate before and after irradiation with 1.5 keV electrons to analyze electron trapping (Fig.5).
3.3. Normalized integrated PE intensity for CaF₂ films of different thicknesses as a function of electron irradiation dose (Fig.6). The electron irradiation dose was determined by the deposition time of each CaF₂ film.
3.4. PE spectra of 50 nm, 125 nm, and 277 nm thick CaF₂ films on Si/SiO₂ substrates after additional electron irradiation with varying doses (Fig.7).
DOI: 10.17632/t8ykvvbhy4.2
title: Charge Trapping in SiO₂ Substrate during Electron Beam Deposition of CaF₂ Thin Films

description: This dataset supports the study of charge trapping phenomena in Si/SiO₂ substrates during the electron beam deposition of CaF₂ thin films of varying thicknesses (50-277 nm). The research hypothesis suggests that electron beam deposition induces charge trapping in the defect centers of the SiO₂ layer which is observed as distinct photoelectron (PE) peaks in the PE spectra of Si/SiO₂/CaF₂ structures. PE spectra were collected under high vacuum conditions using ultraviolet photons (4.2–6.2 eV) to measure electron emission. The results reveal distinct electron trapping peaks in the SiO₂ substrate, with their intensity varying depending on the thickness of the CaF₂ films and the electron irradiation dose.

The dataset includes:
1. X-Ray diffraction (XRD) patterns of CaF₂ films and SiO₂/Si substrate obtained in the grazing incidence mode.
2. X-Ray photoelectron spectroscopy (XPS) of CaF₂ film on on Si/SiO₂ substrate.
3. Atomic force microscopy (AFM) characterization of CaF₂ film on Si/SiO₂ substrate: surface image of the film and its cross-section.
4. PE data:
4.1. PE spectra of CaF₂ films with varying thicknesses, as well as spectra of the bare Si/SiO₂ substrate (Fig.5).
4.2. PE spectra of the bare Si/SiO₂ substrate before and after irradiation with 1.5 keV electrons to analyze electron trapping (Fig.6).
4.3. Normalized integrated PE intensity for CaF₂ films of different thicknesses as a function of electron irradiation dose (Fig.7). The electron irradiation dose was determined by the deposition time of each CaF₂ film.
4.4. PE spectra of 50 nm, 125 nm, and 277 nm thick CaF₂ films on Si/SiO₂ substrates after additional electron irradiation with varying doses (Fig.8).
DOI: 10.17632/mwvf5vdj8b.1
title: Deciphering Urban Heat Island Mitigation: A Comprehensive Analysis of Application Categories and Research Trends: Raw Data

description: a search was conducted on the Web of Science (WoS) database using a specific search string, ((TS=("urban*")) AND TS=("heat* island*")) AND TS=("mitigat*"), limited to the timeframe of 1980 to 2022. The first search term, (TS=("urban*")), is a title search that retrieves records containing the word "urban" or any word beginning with "urban" in the title. The second search term, TS=("heat* island*"), is also a title search that retrieves records containing the words "heat," "island," or any word beginning with "heat" or "island" in the title. Finally, the third search term, TS=("mitigat*"), retrieves records containing the word "mitigation" or any word beginning with "mitigat" in the title. This search strategy is commonly used in scientometric research to yield a comprehensive set of records related to the topic.
DOI: 10.17632/bpjfndfjws.1
title: Electrophysiological_analysis_Slo1-gamma1

description: Source data for Inside-out patch clamp using Xenopus leavis oocyte
The human KCNMA1 (NM_001014797; WT and mutants) and human LRRC26 (NM_001013653; WT and the R295A mutant) cDNAs were inserted into the pGEMHE expression vector67. The cRNAs were transcribed using the mMESSAGE mMACHINE™ T7 Transcription Kit (ThermoFisher Scientific). Oocytes were surgically taken from female Xenopus laevis anesthetized in water containing 0.15% tricaine (Sigma-Aldrich, E10521) for 15-30 min. They were treated with collagenase (Sigma-Aldrich, C0130) for 6-7 h at room temperature to remove the follicular cell layer. Defolliculated oocytes of a similar size at stage V or VI were selected for cRNA injection. The cRNA was injected into each oocyte using Nanoject II (Drummond Scientific Company). Slo1 and LRRC26 cRNAs were coinjected at a ratio of 1:2. cRNA-injected oocytes were incubated for 2-7 days at 18 °C in MBSH buffer (88 mM NaCl, 1 mM KCl, 2.4 mM NaHCO3, 10 mM HEPES, 0.3 mM Ca(NO3)2, 0.41 mM CaCl2, and 0.82 mM MgSO4, pH 7.6) supplemented with 0.1% penicillin-streptomycin solution (Sigma-Aldrich, P4333)
The microelectrodes were drawn from borosilicate glass capillaries (Sutter Instruments, B150-86-10) using a P-1000 micropipette puller (Sutter Instrument) to a resistance of 1.5-3.5 MΩ. An agar bridge containing 3M KCl was used as the reference electrode. The pipette and bath solutions were prepared as described previously21. The pipette solution contains 140 mM K-methanesulfonate, 10 mM HEPES, and 2 mM Mg Cl2. The bath solution contains 140 mM K-methanesulfonate, 10 mM HEPES. Both pipette and bath solutions were adjusted to pH 7.0 by KOH. For the recordings in the absence of CaCl2, the bath solution supplemented with 5 mM EGTA was used. For the recordings in the presence of CaCl2, the bath solution supplemented with 1 µM Ca Cl2 (not the free [Ca2+]) was used. Before experiments, the vitelline membrane of oocytes was removed manually. Devitellinized oocytes were placed in a 35 mm dish (Corning) filled with 3 ml of bath solutions. Current recordings were acquired with an Integrated Patch Clamp (IPA) Amplifier (Sutter Instrument), sampled at 50 kHz, and filtered at 10 kHz. All experiments were performed at room temperature. Residual capacitance and leak currents were subtracted by a P/8 protocol at holding potentials of -120 mV for Slo1 alone condtions or -160 mV for Slo1 with LRRC26 conditions
DOI: 10.17632/mmtcn8fzm3.1
title: Mechanisms of lepidocrocite transformation and concurrent Cd (im)mobilization: Insights from Fe and Cd stable isotopes

description: Raw data for figures in the manuscript and supplementary material. Please refer to the original article for details.
DOI: 10.17632/7f22n9v7hp.1
title: Data on different particulate matter profiles produced in laboratory from construction activity and outdoor monitoring

description: PM1, PM2.5, and PM10 data from construction activity in lab and outdoor monitoring settings using low-cost sensor devices including Alphasense OPC-N3, Soarability Sniffer4d V2, and Plantower PMS5003.
It cab be used for comparing their readings in both settings to find out their accuracy, precision, and reliability while using Alphasense OPC-N3 as a reference sensor for comparison purpose.
DOI: 10.17632/xzzt3gzdjy.1
title: Downscaled ESA CCI Soil Moisture: a new dataset at 1 km for the period 2008-2020

description: The European Space Agency (ESA) Climate Change Initiative (CCI) provides long-term surface soil moisture (SM) records with daily temporal resolution. However, the coarse spatial resolution of approximately 25 km limits their use in many applications, such as agricultural water management, drought monitoring, and rainfall-runoff response. 

To address this constraint, we downscaled the CCI SM product to 0.01° (~ 1 km) using machine learning and a set of static and dynamic variables affecting the spatial organization of SM. In particular, datasets describing the vegetation status throughout time, as well as land cover class, soil and topographic attributes were fed into a Random Forest model. 

The dataset currently consists of two study areas of the WATERLINE project, located in Poland and Greece.
DOI: 10.17632/h766k7nyc4.1
title: Data from: Bacterial pore-forming toxin pneumolysin drives pathogenicity through host extracellular vesicles released during infection

description: Raw data and analysis files
DOI: 10.17632/zs5fkwwg6d.1
title: Upadacitinib for Refractory Alopecia Areata Unresponsive to Prior Systemic Therapies: A Retrospective Study

description: Supplemental table detailing baseline SALT scores, changes in SALT scores, and serum IgE levels for each patient with refractory alopecia areata following treatment with Upadacitinib.
DOI: 10.17632/83fgp472pk.2
title: Southern Ocean Primary Productivity Changes during Middle Eocene to Early Oligocene: Inferences from Benthic Foraminifera: Datasets and Supplementary Materials

description: These datasets contain raw data on benthic foraminiferal abundance and stable isotopes used for statistical analysis. Results suggest the change in the past productivity with time. The interval from the late Eocene to the early Oligocene marked increased productivity with a maximum gain at the Oligocene-Eocene boundary. During Eocene, the proto-Antarctic Circumpolar Current initiated at a deeper depth and may have enhanced productivity.
DOI: 10.17632/83fgp472pk.1
title: Southern Ocean Primary Productivity Changes during Middle Eocene to Early Oligocene: Inferences from Benthic Foraminifera: Datasets and Supplementary Materials

description: These datasets contain raw data on benthic foraminiferal abundance and stable isotope, which is used for statistical analysis. Results suggest the change in the past productivity with time. The interval from the late Eocene to the early Oligocene marked increased productivity with a maximum gain at the Oligocene-Eocene boundary. During the middle Eocene, the proto-Antarctic Circumpolar Current initiated at a deeper depth and may have enhanced productivity.
DOI: 10.17632/hryjdbx7bf.2
title: EKRM for Mesostructural Reconstruction

description: This is the code for method Expert K-Means Reconstruction Method (EKRM).
This code is designed for mesostructure identification, providing a high-resolution image of granite as an example.
The code implements the algorithm from the paper titled "Expert K-Means Reconstruction Method: A Novel Image Processing Approach for Mesostructure Reconstruction."
This paper is currently under review, and further updates on its publication status will be available soon.
Instructions for use can be found within the demo scripts.