cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5519/qd.41f0wpas
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (39019 records)
DOI: 10.6069/stg7-nn50
title: Triage of >1300 candidate biomarkers in plasma using internal standard-triggered parallel reaction monitoring mass spectrometry

description: Despite advances in proteomic technologies, clinical translation of plasma biomarkers remains low, partly due to a major bottleneck between the discovery of hundreds of candidate biomarkers and downstream costly clinical validation studies. Due to a dearth of multiplexable assays, generally only a few candidate biomarkers are tested, and the validation success rate is accordingly low. Here, we demonstrate the capability of internal standard triggered parallel reaction monitoring (IS-PRM) to prioritize candidate biomarkers for validation studies. A 5,176-plex IS-PRM assay  was developed and implemented in human plasma to quantify peptides representing 1,314 breast cancer biomarker candidates. Compared to prior approaches using data-dependent analysis, IS-PRM showed improved sensitivity and precision and enabled rank-ordering of candidate biomarkers for validation studies. The method greatly expands the capabilities for quantification of large numbers of proteins and is well suited for large-scale prioritization of viable candidate biomarkers.
DOI: 10.25740/jd768nw9509
title: Whole Exome sequencing data for Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via Transmission Electron Microscopy: a pilot study

description: Whole Exome sequencing data for "Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via Transmission Electron Microscopy: a pilot study. Jahanbani, F., Maynard, R., Sing, J., Jahanbani , S., Perrino , J., Spacek , D., Davis, R., and Snyder, M"
DOI: 10.25740/zm622tr7008
title: Transmission Electron Microscope images. Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via Transmission Electron Microscopy: a pilot study

description: Transmission Electron Microscope images for "Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via Transmission Electron Microscopy: a pilot study. Jahanbani, F., Maynard, R., Sing, J., Jahanbani , S., Perrino , J., Spacek , D., Davis, R., and Snyder, M"
DOI: 10.5281/zenodo.6473366
title: Data generated from: Functional connectivity of the world's protected areas

description: Here, we provide the two primary global connectivity datasets generated in the study titled "Functional connectivity of the world's protected areas", including the protected area isolation (PAI) metric for all included protected areas (i.e., effective resistance), provided as a csv file, and the map of global mammal movement probability (i.e., electrical current density), provided as a tif. We also include the nationally aggregated PAI values in National_PAI.csv. National PAI represents the median PAI value for each country, after excluding values equal to -1. Generation of these datasets relied on the following three external data sources: - Observed mammal movement data (0.95 quantile displacement distances over 10-days), predictor variables and the linear mixed effects model presented in: M. A. Tucker <em>et al.</em>, <em>Science</em>. <strong>359</strong>, 466–469 (2018). - The 2009 Global Human Footprint map presented in: O. Venter <em>et al.</em>, <em>Nat. Communications.</em> <strong>7</strong>, 1–11 (2016). - The May 2020 and April 2018 versions of the World Database on Protected Areas, found at: UNEP-WCMC and IUCN, Protected Planet: the World Database on Protected Areas (WDPA), Cambridge, UK, (available at www.protectedplanet.com). Please read the Readme.txt for file details and cite the following paper if you use these data: Brennan, A., R. Naidoo, L. Greenstreet, Z. Mehrabi, N. Ramankutty and C. Kremen. Functional connectivity of the world's protected areas. Science (2022).
DOI: 10.5281/zenodo.6473365
title: Data generated from: Functional connectivity of the world's protected areas

description: Here, we provide the two primary global connectivity datasets generated in the study titled "Functional connectivity of the world's protected areas", including the protected area isolation (PAI) metric for all included protected areas (i.e., effective resistance), provided as a csv file, and the map of global mammal movement probability (i.e., electrical current density), provided as a tif. We also include the nationally aggregated PAI values in National_PAI.csv. National PAI represents the median PAI value for each country, after excluding values equal to -1. Generation of these datasets relied on the following three external data sources: - Observed mammal movement data (0.95 quantile displacement distances over 10-days), predictor variables and the linear mixed effects model presented in: M. A. Tucker <em>et al.</em>, <em>Science</em>. <strong>359</strong>, 466–469 (2018). - The 2009 Global Human Footprint map presented in: O. Venter <em>et al.</em>, <em>Nat. Communications.</em> <strong>7</strong>, 1–11 (2016). - The May 2020 and April 2018 versions of the World Database on Protected Areas, found at: UNEP-WCMC and IUCN, Protected Planet: the World Database on Protected Areas (WDPA), Cambridge, UK, (available at www.protectedplanet.com). Please read the Readme.txt for file details and cite the following paper if you use these data: Brennan, A., R. Naidoo, L. Greenstreet, Z. Mehrabi, N. Ramankutty and C. Kremen. Functional connectivity of the world's protected areas. Science (2022).
DOI: 10.5281/zenodo.6762717
title: Tightly linked zonal and meridional sea surface temperature gradients over the past five million years

description: Climatologies for the climate model simulations performed by Fedorov et al., Nature Geoscience, https://www.nature.com/articles/ngeo2577. This table shows how the names of the simulation files provided in this dataset relate to the experiment names provided in Table S2 of Fedorov et al., (2015, Nature Geoscience). Note that experiments 1-26 are from Burls and Fedorov (2014) and published in https://doi.org/10.5281/zenodo.6762450 <strong>Experiment # in Article (Table S2)</strong> <strong>Name of Files</strong> 27 abrupt2xCO2_T31_gx3v7*.nc 28 abrupt4xCO2_T31_gx3v7*.nc 29 abrupt8xCO2_T31_gx3v7*.nc 30 abrupt16xCO2_T31_gx3v7*.nc Extended Exp 11 40p_ILWP_1590deg_tropx2_T31_gx3v7*.nc Extended Exp 16 60p_ILWP_1590deg_tropx4_T31_gx3v7*.nc Article abstract: The climate of the tropics and surrounding regions is defined by pronounced zonal (east–west) and meridional (equator to mid-latitudes) gradients in sea surface temperature. These gradients control zonal and meridional atmospheric circulations, and thus the Earth’s climate. Global cooling over the past five million years, since the early Pliocene epoch, was accompanied by the gradual strengthening of these temperature gradients. Here we use records from the Atlantic and Pacific oceans, including a new alkenone palaeotemperature record from the South Pacific, to reconstruct changes in zonal and meridional sea surface temperature gradients since the Pliocene, and assess their connection using a comprehensive climate model. We find that the reconstructed zonal and meridional temperature gradients vary coherently over this time frame, showing a one-to-one relationship between their changes. In our model simulations, we systematically reduce the meridional sea surface temperature gradient by modifying the latitudinal distribution of cloud albedo or atmospheric CO<sub>2</sub> concentration. The simulated zonal temperature gradient in the equatorial Pacific adjusts proportionally. These experiments and idealized modelling indicate that the meridional temperature gradient controls upper-ocean stratification in the tropics, which in turn controls the zonal gradient along the equator, as well as heat export from the tropical oceans. We conclude that this tight linkage between the two sea surface temperature gradients posits a fundamental constraint on both past and future climates.
description: {"references": ["Fedorov, A. V., Burls, N. J., Lawrence, K. T., & Peterson, L. C. (2015). Tightly linked zonal and meridional sea surface temperature gradients over the past five million years. Nature Geoscience, 8(12), 975-980."]}
DOI: 10.5281/zenodo.6762716
title: Tightly linked zonal and meridional sea surface temperature gradients over the past five million years

description: Climatologies for the climate model simulations performed by Fedorov et al., Nature Geoscience, https://www.nature.com/articles/ngeo2577. This table shows how the names of the simulation files provided in this dataset relate to the experiment names provided in Table S2 of Fedorov et al., (2015, Nature Geoscience). Note that experiments 1-26 are from Burls and Fedorov (2014) and published in https://doi.org/10.5281/zenodo.6762450 <strong>Experiment # in Article (Table S2)</strong> <strong>Name of Files</strong> 27 abrupt2xCO2_T31_gx3v7*.nc 28 abrupt4xCO2_T31_gx3v7*.nc 29 abrupt8xCO2_T31_gx3v7*.nc 30 abrupt16xCO2_T31_gx3v7*.nc Extended Exp 11 40p_ILWP_1590deg_tropx2_T31_gx3v7*.nc Extended Exp 16 60p_ILWP_1590deg_tropx4_T31_gx3v7*.nc Article abstract: The climate of the tropics and surrounding regions is defined by pronounced zonal (east–west) and meridional (equator to mid-latitudes) gradients in sea surface temperature. These gradients control zonal and meridional atmospheric circulations, and thus the Earth’s climate. Global cooling over the past five million years, since the early Pliocene epoch, was accompanied by the gradual strengthening of these temperature gradients. Here we use records from the Atlantic and Pacific oceans, including a new alkenone palaeotemperature record from the South Pacific, to reconstruct changes in zonal and meridional sea surface temperature gradients since the Pliocene, and assess their connection using a comprehensive climate model. We find that the reconstructed zonal and meridional temperature gradients vary coherently over this time frame, showing a one-to-one relationship between their changes. In our model simulations, we systematically reduce the meridional sea surface temperature gradient by modifying the latitudinal distribution of cloud albedo or atmospheric CO<sub>2</sub> concentration. The simulated zonal temperature gradient in the equatorial Pacific adjusts proportionally. These experiments and idealized modelling indicate that the meridional temperature gradient controls upper-ocean stratification in the tropics, which in turn controls the zonal gradient along the equator, as well as heat export from the tropical oceans. We conclude that this tight linkage between the two sea surface temperature gradients posits a fundamental constraint on both past and future climates.
description: {"references": ["Fedorov, A. V., Burls, N. J., Lawrence, K. T., & Peterson, L. C. (2015). Tightly linked zonal and meridional sea surface temperature gradients over the past five million years. Nature Geoscience, 8(12), 975-980."]}
DOI: 10.18164/9a10a030-7a1a-475b-9d0a-44a92611524a
title: Great Lakes Basin Integrated Nutrient Dataset (2000-2019)
title: Jeu de données intégré des nutriments dans les bassins versants des Grands Lacs (2000-2019)

description: The Great Lakes Basin Integrated Nutrient Dataset compiles and standardizes phosphorus, nitrogen, and suspended solids data collected between the 2000-2019 water years from multiple Canadian and American sources around the Great Lakes. Ultimately, the goal is to enable regional nutrient data analysis within the Great Lakes Basin. This data is not directly used in the Water Quality Monitoring and Surveillance Division tributary load calculations. Data processing steps include standardizing data column and nutrient names, date-time conversion to Universal Time Coordinates, normalizing concentration units to milligram per liter, and reporting all phosphorus and nitrogen compounds 'as phosphorus' or 'as nitrogen'. Data sources include the Environment and Climate Change Canada National Long-term Water Quality Monitoring Data (WQMS), the Provincial (Stream) Water Quality Monitoring Network (PWQMN) of the Ontario Ministry of the Environment, the Grand River Conservation Authority (GRCA) water quality data, and Heidelberg University’s National Center for Water Quality Research (NCWQR) Tributary Loading Program.
description: Le jeu de données intégré des nutriments dans les bassins versants des Grands Lacs collige et harmonise des données de phosphore, d’azote et de sédiments en suspension recueillies entre les années hydrologiques 2000 et 2019 à partir de multiples sources canadiennes et américaines autour des Grands Lacs. Le but ultime de ce jeu de données est de permettre une analyse de données régionale. Ces données ne sont pas directement utilisées dans les calculs de charge des affluents de la Division du contrôle et de la surveillance de la qualité de l'eau. Les étapes de traitement de données incluent l’harmonisation des noms des colonnes et des noms des nutriments, la conversion des dates et des heures à un Temps Universel Coordonné, la normalisation des valeurs de concentration à des unités de milligramme par litre, et la transformation des concentrations des composés phosphorés et azotés en la concentration des éléments de phosphore et d’azote. L’origine des données incluent le Données nationales de monitoring de la qualité de l’eau à long terme d’Environnement et Changement Climatique Canada, le Réseau provincial de contrôle de la qualité de l’eau du ministère de l’environnement de l’Ontario, les données de la qualité de l’eau de l’office de protection de la nature de la rivière Grand, et le programme de charges tributaires du National Center for Water Quality Research de l’université de Heidelberg en Ohio.
DOI: 10.3886/e173721
title: War, Pandemics, and Modern Economic Growth in Europe. Replication files.

description: Replication files for the paper entitled "War, Pandemics, and Modern Economic Growth in Europe".<br><br>These files include:<br>Databases used in the paper. Excel format.Different R codes to replicate results in the paper.
DOI: 10.3886/e173721v2
title: War, Pandemics, and Modern Economic Growth in Europe. Replication files.

description: Replication files for the paper entitled "War, Pandemics, and Modern Economic Growth in Europe".<br><br>These files include:<br>Databases used in the paper. Excel format.Different R codes to replicate results in the paper.
DOI: 10.18712/norlag_v3
title: Den norske studien av livsløp, aldring og generasjon - NorLAG 2002-2017

description: NorLAG er en studie som gir ny kunnskap om aldring og eldre år i Norge. Så langt er det gjennomført tre runder med datainnsamling (2002, 2007 og 2017). Studien belyser sentrale livsområder til personer født mellom 1922 og 1966 og deres nære familiemedlemmer (partner, foreldre og barn). Spørreskjemadata kobles til årlige registerdata. Denne kombinasjonen av data gir unike muligheter for forskere fra ulike disipliner til å studere årsaker og konsekvenser av tidspunkt og rekkefølge for overganger som preger andre halvdel av livet. NorLAG data er gratis tilgjengelig for forskningsformål. I tillegg til en basismodul med nøkkelopplysninger om respondenten (f.eks. kjønn, fødselsår), er dataene organisert i 18 moduler som dekker følgende hovedområder: (1) Familie og sosiale nettverk; (2) Arbeid og aktiviteter; og (3) Helse, velvære og verdier. Familie og sosiale nettverk Barn (CH) Partner (PA) Foreldre (PT) Familie og nettverk (FN) Hushold (HH) Sivil status (register) Bolig og bomiljø (HE) Arbeid og aktiviteter Arbeid og pensjonering (WR) Aktiviteter (AC) FD-Trygd: Sykefravær, AAP og pensjon (register) Utdanning (register) Inntekt (register) Helse, velvære og verdier Helse og omsorg (HC) Velvære (WB) Personlighet (PC) Verdier og holdninger (VA) Livshendelser (LE)
DOI: 10.18164/8a362830-b3c3-4cb9-b057-c220ea230e77
title: Taste and Odour Data Lake Ontario 1999 to 2010
title: Données sur le goût et l’odeur, lac Ontario, de 1999 à 2006

description: Lake Ontario is the primary source of drinking water for millions of people. Undesirable taste and odour events may occur in late summer as a result of the release of two volatile organic compounds geosmin (trans-1,10-dimethyl-trans-9-decalol) and 2-Methylisoborneol(1,6,7,7-tetramethylbicyclo[2.2.1]heptan-6-ol) (MIB). These secondary metabolites are produced by actinomycetes and cyanobacteria and yield a musty or earthy taste and odour. These compounds can be detected at very low concentrations (~4 ng/L). Here we present Geosmin, MIB, nutrients and physical data collected between 1999 and 2010 to characterize taste and odour events in Lake Ontario. Spatial surveys of Lake Ontario consisting of approximately 60 stations were conducted yearly in late August and weekly surveys were conducted July to September near the Lorne Park drinking water Intake and Lakeview Park near Toronto, Ontario. Bay of Quinte surveys were conducted August to October 2004 to 2010.
description: Le lac Ontario est la source principale d’eau potable de millions de personnes. Il peut arriver qu’on y détecte un goût et une odeur indésirables vers la fin de l’été en raison de la libération de deux composés organiques volatiles, la géosmine (trans-1,10-diméthyl-trans-9-deécalol) et le 2-méthylisobornéol(1,6,7,7-tétramethylbicyclo[2.2.1]heptan-6-ol) (MIB). Ces métabolites secondaires sont produits par des actinomycètes et des cyanobactéries et rejettent une odeur et un goût de moisi ou de terre. Ces composés peuvent être détectés à des concentrations très basses (~4 ng/L). Nous présentons ici des données sur la géosmine, le MIB et les nutriments et des données physiques recueillies entre 1999 et 2006 pour caractériser les événements causant des odeurs et des goûts indésirables au lac Ontario. Des relevés spatiaux du lac Ontario consistant d’environ 60 stations ont été réalisés chaque année à la fin du mois d’août et des relevés hebdomadaires ont été réalisés de juillet à septembre près de la prise d’eau du parc Lorne et au parc Lakeview près de Toronto. Des relevés à la baie de Quinte ont été réalisés d’août à octobre de 2004 à 2010.
DOI: 10.5281/zenodo.5576626
title: Chrome Testing Dataset

description: This dataset is designed to study testing on Chrome, and It includes about 276 million test cases taken from the Chrome Gerrit website. It also consists of the immediate test results, e.g., fail or pass, and the outcome, such as flaky, decided by the Chrome testing infrastructure.
DOI: 10.5281/zenodo.5576625
title: Chrome Testing Dataset

description: This dataset is designed to study testing on Chrome, and It includes about 276 million test cases taken from the Chrome Gerrit website. It also consists of the immediate test results, e.g., fail or pass, and the outcome, such as flaky, decided by the Chrome testing infrastructure.
DOI: 10.6084/m9.figshare.20126543
title: Data, Code, and Results for the Mediation Analysis with Measurement Error Manuscript

description: Data and code used for the Mediation Analysis with Measurement Error Manuscript. Data includes liver tissue gene expression, protein abundance, and genotypes from 192 Diversity Outbred (DO) mice and 116 Collaborative Cross mice; kidney tissue gene expression and genotypes from 188 DO mice; and gene expression and chromatin accessibility from 63 human Lymphoblastoid Cell Lines. Code for simulatng and processing data, running analyses, and producing figures are included.
DOI: 10.6084/m9.figshare.20126543.v1
title: Data, Code, and Results for the Mediation Analysis with Measurement Error Manuscript

description: Data and code used for the Mediation Analysis with Measurement Error Manuscript. Data includes liver tissue gene expression, protein abundance, and genotypes from 192 Diversity Outbred (DO) mice and 116 Collaborative Cross mice; kidney tissue gene expression and genotypes from 188 DO mice; and gene expression and chromatin accessibility from 63 human Lymphoblastoid Cell Lines. Code for simulatng and processing data, running analyses, and producing figures are included.
DOI: 10.18164/886c889f-22c7-47f4-82b8-9fc16fdb7b82
title: Ecosystem Sites, Total Gaseous Mercury, Preliminary Data, Oil Sands Region
title: Sites de l’écosystème, mercure gazeux total, données préliminaires, region des sables bitumineux

description: Total gaseous mercury (TGM) data are currently collected by Environment and Climate Change Canada at two Wood Buffalo Environmental Association (WBEA) Air Monitoring Stations (AMS). Preliminary, hourly averaged TGM data from the oil sands region are available for: WBEA AMS 6 - Patricia McInnes, located in Fort McMurray, Alberta, and WBEA AMS 13 – Fort McKay South, located near Fort McKay, Alberta. There are no Environment and Climate Change Canada or Canadian Council of Ministers of the Environment (CCME) air quality guidelines, nor Alberta Ambient Air Quality Objectives, for TGM. The monitoring follows the established Canadian Air and Precipitation Monitoring Network (CAPMoN) standard operating procedures. These data are preliminary and of unspecified quality. They are subject to significant change, can occasionally include maintenance data, and should not be used in published documents. Please do not use or distribute these files without the associated metadata. It is recommended that people wishing to use these data first consult with the Principal Investigator to better understand potential limitations.
description: Des données relatives au mercure gazeux total (MGT) sont actuellement recueillies par Environnement et Changement climatique Canada à deux stations de surveillance de la pollution atmosphérique (SSPA) de la Wood Buffalo Environmental Association (WBEA). Des données préliminaires basées sur les concentrations moyennes horaires de MGT provenant de la région des sables bitumineux sont disponibles pour les stations suivantes : SSPA 6 de la WBEA – Patricia McInnes, située à Fort McMurray, en Alberta, et SSPA 13 de la WBEA – Fort McKay Sud, située près de Fort McKay, en Alberta. Dans le cas du MGT, il n’existe aucune recommandation sur la qualité de l’air formulée par Environnement et Changement climatique Canada et le Conseil canadien des ministres de l’environnement (CCME), ni d’objectifs de qualité de l’air ambiant de l’Alberta. La surveillance respecte les procédures normalisées d’exploitation établies du Réseau canadien d’échantillonnage des précipitations et de l’air (RCEPA). Les données sont préliminaires et de qualité non spécifique. Elles peuvent faire l’objet de modifications importantes, comportent parfois des données de maintenance et ne devraient pas être utilisées dans des documents publiés. Veuillez n’utiliser ni diffuser ces fichiers sans les métadonnées associées. On recommande donc aux personnes souhaitant utiliser ces données de consulter d’abord le chercheur principal de manière à mieux comprendre les limites potentielles.
DOI: 10.5517/ccdc.csd.cc29wkyq
title: CCDC 2141664: Experimental Crystal Structure Determination

description: Related Article: Nico Zeitter, Nikolai Hippchen, Steffen Maier, Frank Rominger, Andreas Dreuw, Jan Freudenberg, Uwe H. F. Bunz|2022|Angew.Chem.,Int.Ed.|61|e202200918|doi:10.1002/anie.202200918
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.