DOI: 10.6084/m9.figshare.17798526
title: Additional file 2 of Association analysis and functional annotation of imputed sequence data within genomic regions influencing resistance to gastro-intestinal parasites detected by an LDLA approach in a nucleus flock of Sarda dairy sheep

description: Additional file 2: Table S1. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_01_1 on Ovis aries chromosome 1. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_01_1 on chromosome 1 (from 99000291 to 100998839 bp, Ovis aries genome assembly v4.0). Tables S2. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_02_1 on Ovis aries chromosome 2. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_02_1 on chromosome 2 (from 135000202 to 136999313 bp, Ovis aries genome assembly v4.0). Tables S3. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_02_2 on Ovis aries chromosome 2. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_02_2 on chromosome 2 (from 212000099 to 213999982 bp, Ovis aries genome assembly v4.0). Tables S4. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_04_1 on Ovis aries chromosome 4. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_04_1 on chromosome 4 (from 4000037 to 10000000 bp, Ovis aries genome assembly v4.0). Tables S5. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_06_1 on Ovis aries chromosome 6. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_06_1 on chromosome 6 (from 12000078 to 13999887 bp, Ovis aries genome assembly v4.0). Tables S6. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_07_1 on Ovis aries chromosome 7. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_07_1 on chromosome 7 (from 87000021 to 88999946 bp, Ovis aries genome assembly v4.0). Tables S7. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_12_1 on Ovis aries chromosome 12. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_12_1 on chromosome 12 (from 35000043 to 41999843 bp, Ovis aries genome assembly v4.0). Tables S8. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_15_1 on Ovis aries chromosome 15. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_15_1 on chromosome 15 (from 33000037 to 34999984 bp, Ovis aries genome assembly v4.0). Tables S9. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_19_1 on Ovis aries chromosome 19. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_19_1 on chromosome 19 (from 18000014 to 31999894 bp, Ovis aries genome assembly v4.0). Tables S10. Variant classification according to SNPeff 4.3t of bilallelic SNPs identified within the QTL region Q_20_1 on Ovis aries chromosome 20. Summary table extracted from the additional snpeff output file”snpEff_summary.html file” reporting the number of effects by impact and the number of effects per type and region, for the QTL region Q_20_1 on chromosome 20 (from 16000304 to 36997864 bp, Ovis aries genome assembly v4.0).