cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc28tfbw
title: CCDC 2109808: Experimental Crystal Structure Determination

description: Related Article: Shan Huang, Vinay K. R. Cheemarla, Davide Tiana, Simon E. Lawrence|2023|Cryst.Growth Des.|23|5446|doi:10.1021/acs.cgd.2c01403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tffz
title: CCDC 2109811: Experimental Crystal Structure Determination

description: Related Article: Shan Huang, Vinay K. R. Cheemarla, Davide Tiana, Simon E. Lawrence|2023|Cryst.Growth Des.|23|5446|doi:10.1021/acs.cgd.2c01403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgntd
title: CCDC 2248424: Experimental Crystal Structure Determination

description: Related Article: Shao-Xian Shi, Huan-Huan Zhang, Yi-Lin Wang, Lin-Hong Jiang, Peng-Fei Xu, Yong-Chun Luo|2023|Org.Lett.|25|5426|doi:10.1021/acs.orglett.3c01695
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhvc5
title: CCDC 2249557: Experimental Crystal Structure Determination

description: Related Article: Xiuliang Cheng, Yuhang He, Silin Song, Yu-Mei Lin, Lei Gong|2023|Chem.Commun.|59|9513|doi:10.1039/D3CC02968A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhvmf
title: CCDC 2249565: Experimental Crystal Structure Determination

description: Related Article: Xiuliang Cheng, Yuhang He, Silin Song, Yu-Mei Lin, Lei Gong|2023|Chem.Commun.|59|9513|doi:10.1039/D3CC02968A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fnyjl
title: CCDC 2254460: Experimental Crystal Structure Determination

description: Related Article: Cheng Niu, Yao Zheng, Da-Ming Du|2023|New J.Chem.|47|14515|doi:10.1039/D3NJ02798H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6lcn
title: CCDC 2270451: Experimental Crystal Structure Determination

description: Related Article: Xiuliang Cheng, Yuhang He, Silin Song, Yu-Mei Lin, Lei Gong|2023|Chem.Commun.|59|9513|doi:10.1039/D3CC02968A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3bkh
title: CCDC 2267326: Experimental Crystal Structure Determination

description: Related Article: Ramu V. Ranga Naidu Chinta, Sushree Sulava, Basava Punna Rao Aradhyula, Harithalakshmi Jandhyam, Debasmita Pankaj Alone, Krishnan Venkatasubbaiah|2023|New J.Chem.|47|14508|doi:10.1039/D3NJ02622A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3blj
title: CCDC 2267327: Experimental Crystal Structure Determination

description: Related Article: Ramu V. Ranga Naidu Chinta, Sushree Sulava, Basava Punna Rao Aradhyula, Harithalakshmi Jandhyam, Debasmita Pankaj Alone, Krishnan Venkatasubbaiah|2023|New J.Chem.|47|14508|doi:10.1039/D3NJ02622A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3bmk
title: CCDC 2267328: Experimental Crystal Structure Determination

description: Related Article: Ramu V. Ranga Naidu Chinta, Sushree Sulava, Basava Punna Rao Aradhyula, Harithalakshmi Jandhyam, Debasmita Pankaj Alone, Krishnan Venkatasubbaiah|2023|New J.Chem.|47|14508|doi:10.1039/D3NJ02622A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6257532
title: A localization transition underlies the mode-coupling crossover of glasses

description: This dataset is associated to "A localization transition underlies the mode-coupling crossover of glasses" by D. Coslovich, A. Ninarello and L. Berthier [https://arxiv.org/abs/1811.03171]. It includes post-processed data and workflow to reproduce the analysis and the figures of the article and of the supplemental information. <strong>Supplementary information is available in the Supplement section of the project document (project.pdf).</strong> The easiest way to reproduce the analysis and figures, and then check the results, is to use the make script: <pre><code class="language-bash">./make all</code></pre> Alternatively, the analysis and figures can be reproduced in any of the following ways following the workflow described in the org-mode project file project.org using the individual bash and gnuplot scripts in src/ and plots/ Folders and files description: analysis/: post-processed data src/: bash, python and gnuplot scripts needed to reproduce the analysis plots/: eps figures that appear in the paper and supplemental information and associated gnuplot scripts make: convenience script to setup the python environment, analyze the data and reproduce the figures project.org: org-mode project file with workflow and supplemental information project.pdf: pdf project file with workflow and supplemental information project.bib: bibtex bibliography associated to the project Dependencies: numpy (1.16.3) scipy (1.3.1) argh (0.26.2) atooms (1.9.1) gnuplot (5.0.0) The analysis scripts have been tested with python versions 2.7 and 3.5. The org-mode project file has been tested with org version 9.1.13. Note: this dataset does not contain (at least yet) the particle configurations associated to saddle points, only the post-processed files containing selected properties of their normal modes. Changelog: 1.0.0 initial submission 1.1.0 add "all" target to ./make fix ./make check improve setup description 1.2.0 add analysis of eigenvector-following optimizations small changes and fixes to analysis scripts 1.2.1 fix ./src/adiff.py fix final check of ./make all improve pdf layout improve handling of org properties
DOI: 10.5281/zenodo.1478600
title: A localization transition underlies the mode-coupling crossover of glasses

description: This dataset is associated to "A localization transition underlies the mode-coupling crossover of glasses" by D. Coslovich, A. Ninarello and L. Berthier [https://arxiv.org/abs/1811.03171]. It includes post-processed data and workflow to reproduce the analysis and the figures of the article and of the supplemental information. <strong>Supplementary information is available in the Supplement section of the project document (project.pdf).</strong> The easiest way to reproduce the analysis and figures, and then check the results, is to use the make script: <pre><code class="language-bash">./make all</code></pre> Alternatively, the analysis and figures can be reproduced in any of the following ways following the workflow described in the org-mode project file project.org using the individual bash and gnuplot scripts in src/ and plots/ Folders and files description: analysis/: post-processed data src/: bash, python and gnuplot scripts needed to reproduce the analysis plots/: eps figures that appear in the paper and supplemental information and associated gnuplot scripts make: convenience script to setup the python environment, analyze the data and reproduce the figures project.org: org-mode project file with workflow and supplemental information project.pdf: pdf project file with workflow and supplemental information project.bib: bibtex bibliography associated to the project project.setup: org-mode export configuration Dependencies: numpy (1.21.6) scipy (1.11.1) argh (0.26.2) atooms (1.9.1) gnuplot (5.0.0) The analysis scripts have been tested with python 3.8. The org-mode project file has been tested with org version 9.1.13. Note: this dataset does not contain (at least yet) the particle configurations associated to saddle points, only the post-processed files containing selected properties of their normal modes. Changelog: 1.2.2 fix requirements 1.2.1 fix ./src/adiff.py fix final check of ./make all improve pdf layout improve handling of org properties 1.2.0 add analysis of eigenvector-following optimizations small changes and fixes to analysis scripts 1.1.0 add "all" target to ./make fix ./make check improve setup description 1.0.0 initial submission
DOI: 10.5281/zenodo.8219016
title: A localization transition underlies the mode-coupling crossover of glasses

description: This dataset is associated to "A localization transition underlies the mode-coupling crossover of glasses" by D. Coslovich, A. Ninarello and L. Berthier [https://arxiv.org/abs/1811.03171]. It includes post-processed data and workflow to reproduce the analysis and the figures of the article and of the supplemental information. <strong>Supplementary information is available in the Supplement section of the project document (project.pdf).</strong> The easiest way to reproduce the analysis and figures, and then check the results, is to use the make script: <pre><code class="language-bash">./make all</code></pre> Alternatively, the analysis and figures can be reproduced in any of the following ways following the workflow described in the org-mode project file project.org using the individual bash and gnuplot scripts in src/ and plots/ Folders and files description: analysis/: post-processed data src/: bash, python and gnuplot scripts needed to reproduce the analysis plots/: eps figures that appear in the paper and supplemental information and associated gnuplot scripts make: convenience script to setup the python environment, analyze the data and reproduce the figures project.org: org-mode project file with workflow and supplemental information project.pdf: pdf project file with workflow and supplemental information project.bib: bibtex bibliography associated to the project project.setup: org-mode export configuration Dependencies: numpy (1.21.6) scipy (1.11.1) argh (0.26.2) atooms (1.9.1) gnuplot (5.0.0) The analysis scripts have been tested with python 3.8. The org-mode project file has been tested with org version 9.1.13. Note: this dataset does not contain (at least yet) the particle configurations associated to saddle points, only the post-processed files containing selected properties of their normal modes. Changelog: 1.2.2 fix requirements 1.2.1 fix ./src/adiff.py fix final check of ./make all improve pdf layout improve handling of org properties 1.2.0 add analysis of eigenvector-following optimizations small changes and fixes to analysis scripts 1.1.0 add "all" target to ./make fix ./make check improve setup description 1.0.0 initial submission
DOI: 10.5281/zenodo.8169924
title: Polar metabolomics from Phadnis et al., 2023

description: Polar metabolites data from OVCAR-8 NT sg, OVCAR-8 MMD KO, 786-O NT sg, and 786-O MMD KO cells.
DOI: 10.5281/zenodo.8169923
title: Polar metabolomics from Phadnis et al., 2023

description: Polar metabolites data from OVCAR-8 NT sg, OVCAR-8 MMD KO, 786-O NT sg, and 786-O MMD KO cells.
DOI: 10.7910/dvn/edlf3i
title: Religio-populism Metanalysis

description: Metanalysis for Religio-Populism: A Relational Approach to Religion and Populism
DOI: 10.13020/3s96-fj14
title: Data set for the publication 'Invasive fly species displaces natives in Galapagos with implications for biological control risk assessment'

description: The composition and interactions of carrion flies in the Galapagos Islands is poorly understood, especially when focusing on competition between introduced and endemic fly species. We aimed to assess such composition and interactions by deploying carrion bait traps during the cool and hot seasons, and an experimental approach in a controlled setting was used to investigate interspecific competition among them. Of the eight fly species found in our baited traps, all were introduced except for the endemic sarcophagid, Sarothromyiops dasycnemis (Thomson), and a number of endemic species expected to be encountered were not found. The introduced sarcophagid, Peckia chrysostoma (Wiedemann) was the most abundant fly species found overall, comprising over half of the collected specimens. Most fly species exhibited some level of habitat preference. We conducted a laboratory experiment on resource competition between P. chrysostoma and a subset of the fly species encountered in the baiting study. The results demonstrated that P. chrysostoma is a strong competitor against other carrion fly species in the Galapagos necrobiome, including the endemic S. dasycnemis. A comparison of our data to historical records of fly abundance in Galapagos, combined with the results of our laboratory study, leads to the conclusion that introduced carrion fly species such as P. chrysostoma represent a threat to endemic carrion fly species, such as S. dasycnemis. Three parasitoid species were reared from the puparia collected, two that attacked fly larvae (Brachymeria podagrica and Aphaereta sp.) and one that attacked puparia (Exoristobia sp.). We discuss our results in light of the possibility of the purposeful introduction of a hymenopteran parasitoid as a biological control agent against the avian vampire fly (Philornis downsi Dodge Aitken) in Galapagos.
description: The data set describes the necrophagous insects collected in the Galapagos Islands using meat bait during the wet and dry seasons.
DOI: 10.18739/a2jm23h6z
title: Dissolved Nitrogen Concentrations and Stable Isotopic Composition in The Eastern Canadian Arctic Archipelago and Baffin Bay, Legs 2a and 2b of the ArcticNet expedition, CCGS Amundsen, July 5th to August 15th 2019

description: Climate change is expected to alter the input of nitrogen (N) sources in the Eastern Canadian Arctic Archipelago (ECAA) and Baffin Bay due to increased discharge from glacial meltwater and permafrost thaw. Since dissolved inorganic N is generally depleted in surface waters, dissolved organic N (DON) could represent a significant N source fueling phytoplankton activity in Arctic ecosystems. Yet, few DON data for this region exist. We measured concentrations and stable isotope ratios (δ15N and δ18O) of DON and nitrate (NO3−) to investigate the sources and cycling of dissolved nitrogen in regional rivers and at the sea surface from samples collected in the ECAA and Baffin Bay. Samples were collected during Leg 2a and 2b of the ArcticNet expedition aboard the Canadian Coast Guard Ship (CCGS) Amundsen from July 5th to August 15th of 2019. The concentration and δ15N of DON were measured as in Knapp et al. (2005). Total dissolved nitrogen (TDN) was oxidized to NO3− using recrystallized persulfate followed by measurement on a NOx analyzer by chemiluminescent detection (Braman and Hendrix, 1989). The δ15N of NO3 was determined using the denitrifier method (Weigand et al., 2016). References: Braman, R. S., and Hendrix, S. A. (1989). Nanogram Nitrite and Nitrate Determination in Environmental and Biological Materials by Vanadium(III) Reduction with Chemiluminescence Detection. Analytical Chemistry, 61, 2715–2718. Knapp, A. N., Sigman, D. M., and Lipschultz, F. (2005). N isotopic composition of dissolved organic nitrogen and nitrate at the Bermuda Atlantic Time-series Study site. Global Biogeochemical Cycles, 19(1). Weigand, M. A., Foriel, J., Barnett, B., Oleynik, S., and Sigman, D. M. (2016). Updates to instrumentation and protocols for isotopic analysis of nitrate by the denitrifier method. Rapid Communications in Mass Spectrometry, 30(12), 1365-1383.).
DOI: 10.5281/zenodo.8221546
title: Unconventional secretion of alpha-synuclein mediated by palmitoylated DNAJC5 oligomers

description: Alpha-synuclein (α-syn), a major component of Lewy bodies found in Parkinson’s disease (PD) patients, has been found exported outside of cells and may mediate its toxicity via cell-to-cell transmission. Here, we reconstituted soluble, monomeric α-syn secretion by the expression of DnaJ homolog subfamily C member 5 (DNAJC5) in HEK293T cells. DNAJC5 undergoes palmitoylation and anchors on the membrane. Palmitoylation is essential for DNAJC5-induced α-syn secretion, and the secretion is not limited by substrate size or unfolding. Cytosolic α-syn is actively translocated and sequestered in an endosomal membrane compartment in a DNAJC5-dependent manner. Reduction of α-syn secretion caused by a palmitoylation-deficient mutation in DNAJC5 can be reversed by a membrane-targeting peptide fusion-induced oligomerization of DNAJC5. The secretion of endogenous α-syn mediated by DNAJC5 is also found in a human neuroblastoma cell line, SH-SY5Y, differentiated into neurons in the presence of retinoic acid, and in human-induced pluripotent stem cell-derived midbrain dopamine neurons. We propose that DNAJC5 forms a palmitoylated oligomer to accommodate and export α-syn.
DOI: 10.5281/zenodo.8221547
title: Unconventional secretion of alpha-synuclein mediated by palmitoylated DNAJC5 oligomers

description: Alpha-synuclein (α-syn), a major component of Lewy bodies found in Parkinson’s disease (PD) patients, has been found exported outside of cells and may mediate its toxicity via cell-to-cell transmission. Here, we reconstituted soluble, monomeric α-syn secretion by the expression of DnaJ homolog subfamily C member 5 (DNAJC5) in HEK293T cells. DNAJC5 undergoes palmitoylation and anchors on the membrane. Palmitoylation is essential for DNAJC5-induced α-syn secretion, and the secretion is not limited by substrate size or unfolding. Cytosolic α-syn is actively translocated and sequestered in an endosomal membrane compartment in a DNAJC5-dependent manner. Reduction of α-syn secretion caused by a palmitoylation-deficient mutation in DNAJC5 can be reversed by a membrane-targeting peptide fusion-induced oligomerization of DNAJC5. The secretion of endogenous α-syn mediated by DNAJC5 is also found in a human neuroblastoma cell line, SH-SY5Y, differentiated into neurons in the presence of retinoic acid, and in human-induced pluripotent stem cell-derived midbrain dopamine neurons. We propose that DNAJC5 forms a palmitoylated oligomer to accommodate and export α-syn.
DOI: 10.5066/p9z2kngl
title: Data Release: Seed banks of rare Physostegia correllii in Lady Bird Johnson Lake, Austin, Texas

description: Soil samples were collected from Lady Bird Johnson Lake, Austin, Texas in 2019 to generate seed bank data for the rare plant Physostegia correllii. Seed germination data was produced from the soil samples kept in a greenhouse at the Wetland and Aquatic Research Center in Lafayette, LA.
DOI: 10.5281/zenodo.8221583
title: Student Feedback on Archaeogaming: Persepectives from a Classics Classrom (Dataset)

description: Dataset for submission to CAA 2023 Proceedings.
DOI: 10.5281/zenodo.8221582
title: Student Feedback on Archaeogaming: Persepectives from a Classics Classrom (Dataset)

description: Dataset for submission to CAA 2023 Proceedings.
DOI: 10.6084/m9.figshare.23850366
title: Forearm Gesture Dataset: Gesture Recognition under Different Arm Postures and Force Levels

description: <sub>We present a forearm gesture dataset named "</sub><sub>FEMG-VPF</sub><sub>", comprising simultaneously recorded high-density sEMG, sparse multi-channel sEMG, and Euler angle signals of the forearm muscles. High-density sEMG signals were recorded with a 64-channel high-density grid as well as sparse 8-channel sEMG and 3-channel Euler angle signals were recorded with a Myo armband. Specifically, 28 healthy subjects performed 38 hand gestures under two distinct forearm states: 1) the upper arm naturally drooping with the forearm parallel to the ground, and 2) the upper arm naturally drooping with the forearm at a 45-degree angle to the ground. Each arm posture incorporates one resting gesture, 15 finger movements, and 3 grasping gestures. The finger movements encompassed in the database include single-finger movement, double-finger movement, triple-finger movement, and full-hand movements. The grasping gestures incorporate actions grasping cylindrical objects (i.e., mineral water bottles), planar objects (i.e., books), and spherical objects (i.e., tennis balls), respectively. Each gesture was performed in 6 repeated trials, namely four high-force trials and two low-force trials.</sub>