cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25955/5f3f31cdb7c80
title: Hansenetal_Ramsar_shorebird_summaries_AUS_NZ_August2020

description: This dataset describes the results of a comprehensive review of long-term shorebird monitoring at Australian and New Zealand Ramsar sites. The review was conducted using an online literature search (from 2010 onwards) to compile information for individual site-based studies from published and unpublished sources (i.e. “grey literature”). Field researchers known to be working at particular sites were contacted by email to obtain data and information from additional monitoring initiatives. The review also included data and modelling results from the most recent Australia-wide assessment of waterbird populations, the Australian Bird Index 2 (ABI2), which analysed shorebird population trends at individual Ramsar sites (Clemens et al. 2019). <br> The review included all available Ramsar documentation relating to individual Ramsar sites in Australia and New Zealand. Original Ramsar Information Statements (RIS) and Ecological Character Descriptions (ECD) were accessed through the Ramsar Sites Information Service and the Australian Government Ramsar website, respectively. This information was used to determine which sites were nominated on the basis of one or more shorebird species (or subspecies) under Criterion 6. Other included information was the population counts or values (i.e. total abundance or proportion of flyway population) for individual listed taxa that supported the nomination (if available), Limits of Acceptable Change (LAC) (where quantified for individual species), and any documented changes in LAC from previous assessments. More details on data fields and references can be found under the “Metadata” tab in the Excel spreadsheet.
DOI: 10.6084/m9.figshare.8196908
title: Additional file 5: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S4. Maximum symptom score of 71 previously uncharacterized M. truncatula accessions in response to root infection by V. alfalfae. (CSV 3 kb)
DOI: 10.6084/m9.figshare.8196908.v1
title: Additional file 5: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S4. Maximum symptom score of 71 previously uncharacterized M. truncatula accessions in response to root infection by V. alfalfae. (CSV 3 kb)
DOI: 10.6084/m9.figshare.8196902
title: Additional file 4: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S3. Maximum symptom score of 262 M. truncatula accessions in response to root infection by V. alfalfae. (CSV 6 kb)
DOI: 10.6084/m9.figshare.8196902.v1
title: Additional file 4: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S3. Maximum symptom score of 262 M. truncatula accessions in response to root infection by V. alfalfae. (CSV 6 kb)
DOI: 10.6084/m9.figshare.8196896
title: Additional file 3: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S2. Classification of 262 M. truncatula accessions in eight populations. (CSV 26 kb)
DOI: 10.6084/m9.figshare.8196896.v1
title: Additional file 3: of WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

description: Table S2. Classification of 262 M. truncatula accessions in eight populations. (CSV 26 kb)
DOI: 10.6084/m9.figshare.8196740
title: Additional file 7: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S6. Genetic diversity for each serovar, lineage or biotype. Mean genetic diversity, and index of association IAS, were determined by the LIAN v. 3.7 software. Number of monoallelic VFs, VFs with allelic diversity h &lt; 0.1, total number of monoallelic VFs and VFs with allelic diversity h &lt; 0.1, were calculated with corresponding 95% confidence intervals. Cells were highlighted with a color gradient (white = 0 to darkest blue = 0.8655). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8196734
title: Additional file 6: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S5. Genetic diversity for 70 virulence factors among all serovars. Simpsonâ s index with confidence interval (CI), non-approximated confidence interval (CINA), number of amino acids (aa) in the mature protein (without the signal peptide, SP), number of alleles to the number of total amino acids, number of variable amino acids, percent of variable amino acids per total amino acids. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8196740.v1
title: Additional file 7: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S6. Genetic diversity for each serovar, lineage or biotype. Mean genetic diversity, and index of association IAS, were determined by the LIAN v. 3.7 software. Number of monoallelic VFs, VFs with allelic diversity h &lt; 0.1, total number of monoallelic VFs and VFs with allelic diversity h &lt; 0.1, were calculated with corresponding 95% confidence intervals. Cells were highlighted with a color gradient (white = 0 to darkest blue = 0.8655). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8196725
title: Additional file 4: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S4. List of allele numbers for the 70 virulence factors in the 500 Salmonella strains. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.8196734.v1
title: Additional file 6: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S5. Genetic diversity for 70 virulence factors among all serovars. Simpsonâ s index with confidence interval (CI), non-approximated confidence interval (CINA), number of amino acids (aa) in the mature protein (without the signal peptide, SP), number of alleles to the number of total amino acids, number of variable amino acids, percent of variable amino acids per total amino acids. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8196722
title: Additional file 3: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S3. List of virulence factor genes absent in some Salmonella strains or serovars. Genes were either present (+) or absent (-) in all or some strains (+/-). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8196725.v1
title: Additional file 4: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S4. List of allele numbers for the 70 virulence factors in the 500 Salmonella strains. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.8196722.v1
title: Additional file 3: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S3. List of virulence factor genes absent in some Salmonella strains or serovars. Genes were either present (+) or absent (-) in all or some strains (+/-). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8196713
title: Additional file 2: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S2. List of the 500 Salmonella genomes (7 serovars) selected and metadata. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.8196707
title: Additional file 1: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S1. List of virulence factors and â controlâ proteins selected for this study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8196713.v1
title: Additional file 2: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S2. List of the 500 Salmonella genomes (7 serovars) selected and metadata. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.8196707.v1
title: Additional file 1: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S1. List of virulence factors and â controlâ proteins selected for this study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8196692
title: Additional file 14: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S7. Genetic diversity for 40 virulence factors-associated proteins among all serovars. Values as described in Additional file: Table S5. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196692.v1
title: Additional file 14: of Association of Salmonella virulence factor alleles with intestinal and invasive serovars

description: Table S7. Genetic diversity for 40 virulence factors-associated proteins among all serovars. Values as described in Additional file: Table S5. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196680
title: Additional file 5: of Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

description: Table S3. Top 20 candidate reference genes in each cancer type. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.8196680.v1
title: Additional file 5: of Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

description: Table S3. Top 20 candidate reference genes in each cancer type. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.8196659
title: Additional file 3: of Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

description: Table S2. Gene expression variability of commonly used and experimentally selected reference genes in each cancerous and normal group. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8196659.v1
title: Additional file 3: of Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

description: Table S2. Gene expression variability of commonly used and experimentally selected reference genes in each cancerous and normal group. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8196608
title: MOESM1 of A proposed correction in the weighted method to score the Ishihara test

description: Additional file 1. Binary results of Ishihara test. Three spreadsheets containing the binary results of Ishihara plates for normal trichromats (spreadsheet #1), protan subjects (spreadsheet #2), and deutan (spreadsheet #1). Value 1 means correct response, value 0 means incorrect response.
DOI: 10.17632/7pn6jgkkvx.1
title: Data for: Experimental study on thermal cracking reactions of ultra-heavy oils during air injection assisted in-situ upgrading process

description: Compositional characterization of the reaction products during thermal cracking experiments
DOI: 10.17632/8mwwdp4kpm.1
title: Data for: Relative efficiency of passive dust samplers: progress towards coarse dust dispersion modelling

description: Results from DS100 directional sticky dust monitoring, Wilson and Cooke dust catcher and meteorological monitoring data at a small mineral stockyard and quarry in southern England
DOI: 10.17632/8xbd6394z7.2
title: Data for: Patterns of diversity change for forest vegetation across different climatic zones - a compound habitat gradient analysis approach

description: It provides ecological data of forest communities in different climatic regions of China, which is helpful to understand the forest distribution and construction law in China.
DOI: 10.26182/5f474fe5dfefe
title: Supplement to “Serum testosterone is inversely, and sex hormone-binding globulin directly, associated with all-cause mortality in men”.
DOI: 10.17632/8xbd6394z7.3
title: Data for: Patterns of diversity change for forest vegetation across different climatic zones - a compound habitat gradient analysis approach

description: It provides ecological data of forest communities in different climatic regions of China, which is helpful to understand the forest distribution and construction law in China.
DOI: 10.34740/kaggle/dsv/1436885
title: World University Rankings 2020-21
DOI: 10.6084/m9.figshare.8158817
title: Advancing land-sea integration for ecologically meaningful coastal conservation and management: Dataset

description: Dataset from "Advancing land-sea integration for ecologically meaningful coastal conservation and management". <br>This dataset is an ESRI shapefile of South Africa's ecologically determined coastal zone. It is available on South Africa's National Integrated Coastal Map Project page: http://bgis.sanbi.org/Projects/Detail/213 (click on the 2018 Coastal Map tab on the left for shapefiles). Any further iterations and refinements of this map will also be available from this Coastal Map Project page; this way, readers will always have access to the latest version of the map of coastal ecosystem types for South Africa.<br>The map was developed by fine-scale mapping of a seashore zip (comprising a backshore and shore zone) that seamlessly joins the existing terrestrial National Vegetation Map (see: http://bgis.sanbi.org/Projects/Detail/60), National Estuaries Map (http://bgis.sanbi.org/SpatialDataset/Detail/2683), and National Marine Map (http://bgis.sanbi.org/SpatialDataset/Detail/2681).
DOI: 10.6084/m9.figshare.8158817.v1
title: Advancing land-sea integration for ecologically meaningful coastal conservation and management: Dataset

description: Dataset from "Advancing land-sea integration for ecologically meaningful coastal conservation and management". <br>This dataset is an ESRI shapefile of South Africa's ecologically determined coastal zone, developed by fine-scale mapping of a seashore zip (comprising a backshore and shore zone) that seamlessly joins the existing terrestrial National Vegetation Map (see: http://bgis.sanbi.org/Projects/Detail/60), National Estuaries Map, and National Marine Map.<br>It is available on South Africa's National Integrated Coastal Map Project page: http://bgis.sanbi.org/Projects/Detail/213
DOI: 10.6084/m9.figshare.8158814
title: Supplementary Material for: Disease-Free Survival for Patients with Thin Melanomas according to the American Joint Committee on Cancer 8th Edition

description: <b><i>Background:</i></b> The recently implemented AJCC 8th edition TNM staging system for malignant melanoma (MM) changed the definition for T1a and T1b tumours. <b><i>Objectives:</i></b> To analyse differences in disease-free survival (DFS) among patients with thin MM staged according to both AJCC 7th and 8th editions. <b><i>Methods:</i></b> An observational study including 285 patients with cutaneous thin MM (thickness ≤1 mm). Cases were staged as T1a and T1b using both 7th and 8th editions. Neither regional nor visceral diseases were present at diagnosis. DFS curves were generated according to the Kaplan-Meier method. <b><i>Results:</i></b> An 8% shift of patients from a T1a towards a T1b stage group was observed after applying the AJCC 8th edition. According to this 8th edition, DFS for T1a patients was significantly longer than for T1b patients (log-rank test; <i>p</i> = 0.005); 5-year DFS for T1a and T1b was 100 and 95%, respectively (Wilcoxon test; <i>p</i> = 0.002). According to the AJCC 7th edition, DFS did not significantly differ for T1a and T1b patients; 5-year DFS for T1a and T1b was 99 and 97%, respectively (<i>p</i> &gt; 0.05). <b><i>Conclusions:</i></b> The AJCC 8th edition seems to be a better tool for staging thin melanomas.
DOI: 10.6084/m9.figshare.8158814.v1
title: Supplementary Material for: Disease-Free Survival for Patients with Thin Melanomas according to the American Joint Committee on Cancer 8th Edition

description: <b><i>Background:</i></b> The recently implemented AJCC 8th edition TNM staging system for malignant melanoma (MM) changed the definition for T1a and T1b tumours. <b><i>Objectives:</i></b> To analyse differences in disease-free survival (DFS) among patients with thin MM staged according to both AJCC 7th and 8th editions. <b><i>Methods:</i></b> An observational study including 285 patients with cutaneous thin MM (thickness ≤1 mm). Cases were staged as T1a and T1b using both 7th and 8th editions. Neither regional nor visceral diseases were present at diagnosis. DFS curves were generated according to the Kaplan-Meier method. <b><i>Results:</i></b> An 8% shift of patients from a T1a towards a T1b stage group was observed after applying the AJCC 8th edition. According to this 8th edition, DFS for T1a patients was significantly longer than for T1b patients (log-rank test; <i>p</i> = 0.005); 5-year DFS for T1a and T1b was 100 and 95%, respectively (Wilcoxon test; <i>p</i> = 0.002). According to the AJCC 7th edition, DFS did not significantly differ for T1a and T1b patients; 5-year DFS for T1a and T1b was 99 and 97%, respectively (<i>p</i> &gt; 0.05). <b><i>Conclusions:</i></b> The AJCC 8th edition seems to be a better tool for staging thin melanomas.
DOI: 10.6084/m9.figshare.8158109
title: A new kannemeyeriiform dicynodont (<i>Ufudocyclops mukanelai</i>, gen. et sp. nov.) from Subzone C of the <i>Cynognathus</i> Assemblage Zone, Triassic of South Africa, with implications for biostratigraphic correlation with other African Triassic faunas

description: A new taxon of kannemeyeriiform dicynodont, <i>Ufudocyclops mukanelai</i>, is described based on a well-preserved skull from Subzone C of the <i>Cynognathus</i> Assemblage Zone, which are the youngest strata (probably Middle Triassic) of the Beaufort Group (uppermost Burgersdorp Formation) in South Africa. <i>Ufudocyclops mukanelai</i> is diagnosed by its autapomorphic intertemporal morphology: the intertemporal bar in this taxon is ‘X’-shaped—broad anteriorly and posteriorly but distinctly ‘pinched’ at mid-length and bears a deep, triangular depression immediately behind the enormous pineal foramen. The new kannemeyeriiform can also be diagnosed by the presence of a laterally expanded jugal plate beneath the orbit, and highly discrete, ovoid nasal bosses separated by a broad, unornamented median portion of the premaxilla and the nasals. Two partial dicynodont skulls from this subzone, previously identified as specimens of the otherwise Tanzanian taxon <i>Angonisaurus</i>, are also referable to <i>U</i>. <i>mukanelai</i>. Removal of these specimens from the hypodigm of <i>Angonisaurus</i> eliminates a crucial point of correlation between <i>Cynognathus</i> Subzone C and the Manda Beds of Tanzania and suggests that Subzone C preserves a distinct, endemic fauna, not just a southern extension of the better-known Middle–Late Triassic tetrapod faunas from Tanzania and Zambia. Inclusion of <i>Ufudocyclops</i> in a phylogenetic analysis of anomodonts recovers it as an early stahleckeriid, the first record of this clade from the <i>Cynognathus</i> Assemblage Zone.
DOI: 10.6084/m9.figshare.8158109.v2
title: A new kannemeyeriiform dicynodont (<i>Ufudocyclops mukanelai</i>, gen. et sp. nov.) from Subzone C of the <i>Cynognathus</i> Assemblage Zone, Triassic of South Africa, with implications for biostratigraphic correlation with other African Triassic faunas

description: A new taxon of kannemeyeriiform dicynodont, <i>Ufudocyclops mukanelai</i>, is described based on a well-preserved skull from Subzone C of the <i>Cynognathus</i> Assemblage Zone, which are the youngest strata (probably Middle Triassic) of the Beaufort Group (uppermost Burgersdorp Formation) in South Africa. <i>Ufudocyclops mukanelai</i> is diagnosed by its autapomorphic intertemporal morphology: the intertemporal bar in this taxon is ‘X’-shaped—broad anteriorly and posteriorly but distinctly ‘pinched’ at mid-length and bears a deep, triangular depression immediately behind the enormous pineal foramen. The new kannemeyeriiform can also be diagnosed by the presence of a laterally expanded jugal plate beneath the orbit, and highly discrete, ovoid nasal bosses separated by a broad, unornamented median portion of the premaxilla and the nasals. Two partial dicynodont skulls from this subzone, previously identified as specimens of the otherwise Tanzanian taxon <i>Angonisaurus</i>, are also referable to <i>U</i>. <i>mukanelai</i>. Removal of these specimens from the hypodigm of <i>Angonisaurus</i> eliminates a crucial point of correlation between <i>Cynognathus</i> Subzone C and the Manda Beds of Tanzania and suggests that Subzone C preserves a distinct, endemic fauna, not just a southern extension of the better-known Middle–Late Triassic tetrapod faunas from Tanzania and Zambia. Inclusion of <i>Ufudocyclops</i> in a phylogenetic analysis of anomodonts recovers it as an early stahleckeriid, the first record of this clade from the <i>Cynognathus</i> Assemblage Zone.
DOI: 10.6084/m9.figshare.8158109.v1
title: A new kannemeyeriiform dicynodont (<i>Ufudocyclops mukanelai</i>, gen. et sp. nov.) from Subzone C of the <i>Cynognathus</i> Assemblage Zone, Triassic of South Africa, with implications for biostratigraphic correlation with other African Triassic Faunas

description: A new taxon of kannemeyeriiform dicynodont, <i>Ufudocyclops mukanelai</i>, is described based on a well-preserved skull from Subzone C of the <i>Cynognathus</i> Assemblage Zone, which are the youngest strata (probably Middle Triassic) of the Beaufort Group (uppermost Burgersdorp Formation) in South Africa. <i>Ufudocyclops mukanelai</i> is diagnosed by its autapomorphic intertemporal morphology: the intertemporal bar in this taxon is ‘X’-shaped—broad anteriorly and posteriorly but distinctly ‘pinched’ at mid-length and bears a deep, triangular depression immediately behind the enormous pineal foramen. The new kannemeyeriiform can also be diagnosed by the presence of a laterally expanded jugal plate beneath the orbit, and highly discrete, ovoid nasal bosses separated by a broad, unornamented median portion of the premaxilla and the nasals. Two partial dicynodont skulls from this subzone, previously identified as specimens of the otherwise Tanzanian taxon <i>Angonisaurus</i>, are also referable to <i>U</i>. <i>mukanelai</i>. Removal of these specimens from the hypodigm of <i>Angonisaurus</i> eliminates a crucial point of correlation between <i>Cynognathus</i> Subzone C and the Manda Beds of Tanzania and suggests that Subzone C preserves a distinct, endemic fauna, not just a southern extension of the better-known Middle–Late Triassic tetrapod faunas from Tanzania and Zambia. Inclusion of <i>Ufudocyclops</i> in a phylogenetic analysis of anomodonts recovers it as an early stahleckeriid, the first record of this clade from the <i>Cynognathus</i> Assemblage Zone.
DOI: 10.6084/m9.figshare.8158097
title: Carbepenem acyl-enzyme parameters (for beta-lactamase simulations): Meropenem

description: Acyl-enzyme parameters used in the following publication:"QM/MM simulations as an assay for carbapenemase activity in class A β-lactamases"<br>Chudyk EI, Limb MAL, Jones C, Spencer J, Van der Kamp MW, Mulholland AJ. 2014. <i>Chem Commun 50</i>, 14736<br>DOI: 10.1039/c4cc06495j<br><br><br>Acyl-enzyme of Meropenem (incl. Ser70) Files: MER.off, MER.frcmodResidue name: MERAtom names are labeled in: MER_atom_names.png<br>Parameterisation procedure: Initial Amber ff14SB force field parameters for the acylated Ser-70 residue (with caps on either side) were obtained from the RED Server (partial charges from HF/6-31G(d,p) RESP-fitting and atom types). For missing parameters, chemically equivalent parameters from the GAFF force field were used.
DOI: 10.6084/m9.figshare.8158094
title: CC Stats

description: This file contains the CC statistics.
DOI: 10.6084/m9.figshare.8158094.v1
title: CC Stats

description: This file contains the CC statistics.
DOI: 10.6084/m9.figshare.8158091
title: Genotype data of South China indigenous pigs

description: The genotype data of South China indigenous pigs.
DOI: 10.6084/m9.figshare.8158091.v2
title: Genotype data of South China indigenous pigs

description: The genotype data of South China indigenous pigs.