cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.682dc
title: Data from: Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests

description: Clearwing moths are known for their physical resemblance to hymenopterans,
 but the extent of their behavioural mimicry is unknown. We describe zigzag
 flights of sesiid bee mimics which are nearly indistinguishable from those
 of sympatric bees, whereas sesiid wasp mimics display faster, straighter
 flights more akin to those of wasps. In particular, the flight of the
 sesiids Heterosphecia pahangensis, Aschistophleps argentifasciata and
 Pyrophleps cruentata resembles both Tetragonilla collina and T. atripes
 stingless bees and, to a lesser extent, dwarf honey bees Apis
 andreniformis, whereas the sesiid Pyrophleps sp. resembles Tachysphex sp.
 wasps. These findings represent the first experimental evidence for
 behavioural mimicry in clearwing moths.
description: I. Tables 3-11 results
 of ANOVA and Tukey-Kramer tests for flight parameters by
 speciesTables 3–11: results of
 ANOVA and Tukey-Kramer tests for flight parameters by species. From
 "Moving like a model: mimicry of hymenopteran flight trajectories by
 clearwing moths of Southeast Asian rainforests" Skowron Volponi,
 Marta, McLean, Donald, Volponi, Paolo, Dudley, RobertI_Tables_pdfs.zipII. R code. Flight trajectories calculationsThis is a complete R code used for flight trajectory analysis described in "Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests" Skowron Volponi, Marta, McLean, Donald, Volponi, Paolo, Dudley, RobertII R Code.zipIII. Calculated flight trajectories parametersComplete calculated parameters of all analysed flight trajectories in study "Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests" Skowron Volponi, Marta, McLean, Donald, Volponi, Paolo, Dudley, RobertIII_Parameters_Complete.csvIV. Minimums, maximums and means of calculated variablesMinimums, maximums and means of calculated variables from "Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests" Skowron Volponi, Marta, McLean, Donald, Volponi, Paolo, Dudley, RobertIV_Parameters_Means_Species.csvV. (x,y) coordinates of digitized flight trajectories(x,y) coordinates of digitized flight trajectories from "Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests" Skowron Volponi, Marta, McLean, Donald, Volponi, Paolo, Dudley, RobertV_xy_coordinates_analysed_trajectories.zip
DOI: 10.5061/dryad.365f3
title: Data from: The relationship between substrate morphology and biological performances of nano-silver-loaded dopamine coatings on the titanium surfaces

description: Biomedical device-associated infection(BAI) and lack of osseointegration
 are the main causes of implant failure. Therefore, it is imperative for
 implant not only to depress microbial activity and biofilm colonization
 but also to prompt osteoblast functions and osseointegration. As part of
 the coating development for implants, the interest of in vitro studies on
 the interaction between implant substrate morphology and biological
 performances is growing. In this study, by harnessing the adhesion and
 reactivity of bioinspired polydopamine, nano-silver were successfully
 anchored onto micro/nanoporous as well as smooth titanium surfaces to
 analyze the effect of substrate morphology on biological performances of
 the coatings. Compared with smooth surface, small size of nano-Ag and high
 Ag content was found on the micro/nanoporous surface. More mineralization
 happened on the coating on micro/nanoporous structure than on smooth
 surface, which led to a more rapid decrease of Ag release from
 micro/nanoporous surface. Antimicrobial tests indicated that both surfaces
 with resulting coating inhibit microbial colonization on them and growth
 around them, indicating that the coating eliminates the shortcoming of
 porous structure which render the implant extremely susceptible to BAI.
 Besides, the multiple osteoblast responses of nano-Ag-loaded dopamine
 coatings on both surfaces, i.e. attachment, proliferation and
 differentiation, have deteriorated, however the mineralized surfaces of
 these coatings stimulated osteoblast proliferation and differentiation,
 especially for the micro/nanoporous surface. So the resulting coatings on
 micro/nanoporous substratum may not only reduce the risk of infection but
 also facilitate mineralization during the early post-operative period and
 then promote osseointegration due to good osteoblast-biocompatibility of
 the mineralized surface. These results highlight the influence of the
 substrate morphology on the biological performances of implant coating.
description: WCAAg release and
 XPSThe growth curve of the
 microbesALP
DOI: 10.5061/dryad.v5tn2
title: Data from: Ecological traps for large-scale invasive species control: predicting settling rules by recolonising American mink post-culling

description: 1. Management programs worldwide seeking to reduce the density of invasive
 species must overcome compensatory processes, such as recolonisation by
 dispersers from non- or partially-controlled areas. However, the scale and
 drivers of dispersal in such context are poorly known. 2. We investigated
 the dispersal patterns of American mink reinvading 20,000 km2 of their
 non-native range following a culling programme led by citizen
 conservationists. Using multinomial models, we estimated the contributions
 of density dependence, proxies for patch quality and distance from the
 natal patch on mink settlement. 3. Seventy seven percent of mink dispersed
 and settled in non-natal patches. Dispersal distances were large with
 settlement probabilities only reduced by half at ~60 km, and 20% of mink
 dispersing &gt; 80 km. 4. Females were more attracted to patches of
 high quality mostly found at low altitudes. Males favoured patches with
 intermediate current densities and consistently high quality. Synthesis
 and applications. Predicting post-culling recolonisation by a non-native
 mobile carnivore over large spatial scale was possible using information
 on relative densities obtained during management interventions largely
 implemented by citizen conservationists. This was possible by a continued
 monitoring of the area designed to feed into the adaptive management
 process of the control project. High mink mobility dictates management
 should take place on very large spatial scales to minimise reinvasion from
 un-controlled areas. Our research shows both males and females are
 attracted to patches with previously consistent occupation, which provides
 a degree of predictability to patterns of recolonisation. Targeting
 control to patches attractive to immigrant mink requires knowledge of
 current mink density. Creating so-called ecological traps in the face of
 ongoing immigration from peripheral areas provides a promising tool to
 effectively control mobile invasive species.
description: Data for
 RcodeContains the
 standardised data for the modelsMNP_invasion.txt
DOI: 10.5061/dryad.72431
title: Data from: Evidence that metallic proxies are unsuitable for assessing the mechanics of microwear formation and a new theory of the meaning of microwear

description: Mammalian tooth wear research reveals contrasting patterns seemingly
 linked to diet: irregularly-pitted enamel surfaces, possibly from
 consuming hard seeds, vs. roughly-aligned linearly-grooved surfaces,
 associated with eating tough leaves. These patterns are important for
 assigning diet to fossils, including hominins. However, experiments
 establishing conditions necessary for such damage challenge this paradigm.
 Lucas et al. (2013) slid natural objects against enamel, concluding
 anything less hard than enamel would rub, not abrade, its surface
 (producing no immediate wear). This category includes all organic plant
 matter. Particles harder than enamel, with sufficiently angular surfaces,
 could abrade it immediately, prerequisites that silica/silicate particles
 alone possess. Xia et al. (2015) countered with experiments using brass
 and aluminium balls. Their bulk hardness was lower than enamel, but the
 latter was abraded. We examined the ball exteriors to address this
 discrepancy. The aluminium was surfaced by a thin rough oxide layer harder
 than enamel. Brass surfaces were smoother, but work-hardening during
 manufacture gave them comparable or higher hardness than enamel. We
 conclude that Xia et al.’s results are actually predicted by the
 mechanical model of Lucas et al. To explain wear patterns, we present a
 new model of textural formation, based on particle properties and
 presence/absence of silica(tes).
description: Nanoindentation and EDS
 scanning of brass and aluminium ballsNanoindentation results
 for brass and aluminium balls with data for fused quartz used in Berkovich
 tip calibration to find its effective radius of curvature. The first 10
 files for aluminium have been processed in terms of initial contact of the
 blunt tip. Also, there are energy-dispersive spectroscopic (EDS) scans of
 the exterior of an aluminium ball to establish the nature of its external
 rough coating.Nanoindentation data on brass
 and Al balls plus EDS on Al ball
 exterior.zip
DOI: 10.5061/dryad.df59k
title: Data from: A taxonomic, functional and phylogenetic perspective on the community assembly of passerine birds along an elevational gradient in southwest China

description: Integrating multiple-facets of biodiversity to describe spatial and
 temporal distribution patterns is one way of revealing the mechanisms
 driving community assembly. We assessed the species, functional and
 phylogenetic composition and structure of passerine bird communities along
 an elevational gradient both in wintering and breeding seasons in the
 Ailao Mountains, southwest China, in order to identify the dominant
 ecological processes structuring the communities and how these processes
 change with elevation and season. Our research confirms that the highest
 taxonomic diversity, and distinct community composition, was found in the
 moist evergreen broadleaf forest at high elevation in both seasons.
 Environmental filtering was the dominant force at high elevations with
 relatively cold and wet climatic conditions, while the observed value of
 mean pairwise functional and phylogenetic distances of low elevation were
 constantly higher than expectation in two seasons, suggested interspecific
 competition could played the key role at low elevations, perhaps because
 of relative rich resource result from complex vegetation structure and
 human-induced disturbance. Across all elevations, there was a trend of
 decreasing intensity of environmental filtering whereas increasing
 interspecific competition from wintering season to breeding season. This
 was likely due to the increased resource availability but
 reproduction-associated competition in the summer months. In general,
 there is a clear justification for conservation efforts to protect entire
 elevational gradients in the Ailao Mountains, given the distinct
 taxonomic, functional and phylogenetic compositions and also elevational
 migration pattern in passerine bird communities.
description: Supplementary
 material
DOI: 10.5061/dryad.g7907
title: Data from: Wake-induced oscillation behavior of twin bundle conductor transmission lines

description: A numerical method to simulate air flow around a bundle conductor line by
 means of FLUENT software is presented and verified by a wind tunnel test
 for aerodynamic characteristics of a twin bundle conductor line. The lift
 and drag coefficients of the leeward sub-conductor of a twin bundle
 conductor varying with its relative position in the wake zone to the
 windward one under different wind velocities are numerically determined by
 the presented method. A user-defined subroutine of ABAQUS software is
 developed to apply the aerodynamic loads on each sub-conductor and the
 electromagnetic force between sub-conductors. The numerical simulation
 method for wake-induced oscillation of a bundle conductor line is
 proposed. By means of the numerical method, wake-induced oscillation
 processes of twin bundle conductor transmission lines under different
 parameters, including current intensity, spacer layout, span length and
 wind velocity, are numerically simulated. Moreover, the effects of those
 parameters on the oscillation characteristics of the lines, such as
 vibration mode, frequency, amplitude and motion trace, are discussed. The
 obtained results provide a fundamental for the understanding of
 wake-induced oscillation behavior of twin bundle conductor transmission
 lines and the development of control technique for wake-induced
 oscillation.
description: DataThe data file includes
 the original data of Figures. The file can be accessed by origin edit
 software.
DOI: 10.5061/dryad.j3073
title: Data from: Using molecular phylogenies in island biogeography: it’s about time

description: Island biogeography aims at inferring the processes that govern the
 assembly of communities in space and time. Molecular phylogenies can tell
 us about the timings of island colonisations and diversification, but have
 rarely been used for the estimation of colonisation, speciation and
 extinction rates on islands. In this study we illustrate the effects of
 including phylogenetic information with the Galápagos avifauna. We find
 that by including colonisation times we obtain much more precise and
 accurate parameter estimates than if we rely solely on species richness
 and endemicity status. Inclusion of branching times improves estimates
 even further. As molecular phylogenies become increasingly available, we
 urge biogeographers to start using more of the information they contain.
description: G1_GalapagosData on native resident Galápagos terrestrial birds, G1 format, only richness + island ageG2_GalapagosData on native resident Galápagos terrestrial birds, G2 format, richness + island age + colonisation timesG3_GalapagosData on native resident Galápagos terrestrial birds, G3 format, richness + island age + colonisation times + branching timesG1_sims_4MyrSimulations, G1 format, 3000 replicates, 4 million yearsG1_sims_10MyrSimulations, G1 format, 3000 replicates, 10 million yearsG2_sims_4MyrSimulations, G2 format, 3000 replicates, 4 million yearsG2_sims_10MyrSimulations, G2 format, 3000 replicates, 10 million yearsG3_sims_4MyrSimulations, G3 format, 3000 replicates, 4 million yearsG3_sims_10MyrSimulations, G3 format, 3000 replicates, 10 million years
DOI: 10.5061/dryad.5h74t
title: Data from: Geographic patterns of song variation in four species of Malurus fairy-wrens

description: Geographic variation in song is widespread among birds, particularly in
 species that learn vocalizations. The relationship between geographic
 distance and song variation is likely related to the degree of isolation
 between populations. To assess this effect of geographic isolation on song
 divergence, we examined patterns of geographic song variation in four
 species of Australian fairy-wrens (Malurus), two with suspected histories
 of geographic isolation and two without. Song variation in all four
 species was consistent with patterns of isolation by distance, and
 allopatric subspecies in two species were more divergent in song than
 predicted by distance alone. Each species' pattern was unique, and
 some interspecific variation could not be explained by geographic
 distance. These results indicate that patterns of geographic variation can
 be influenced by more than geographic distance and historical isolation
 alone. We suggest that morphological constraints, environmental
 influences, and sexual selection may all contribute to the variation
 observed for each species.
description: articleDOI
 10.1111_jav.01446_fairywren song dataSee
 README
DOI: 10.5061/dryad.h49g4
title: Data from: Individual differences in torpor expression in adult mice are related to relative birth weight

description: Daily torpor is a physiological adaptation in small mammals and birds,
 characterised by drastic reductions in metabolism and body temperature.
 Energy-constraining conditions, such as cold and starvation, are known to
 cause the expression of daily torpor. However, the reason for high degrees
 of inter- and intra- individual variation in torpor expression (TE) in
 similar situations is not clear. As littermates of altricial animals are
 exposed to an uneven allocation of maternal resources from conception to
 weaning, we tested whether early nutritional experiences have long-term
 effects on TE in adults. We used full-sibling littermates of laboratory
 mice that as adults were starved overnight to induce torpor. We measured
 body weight from birth until adulthood as an indicator of nutritional
 status, and calculated the relative body weight (RBW) as an indicator of
 the difference in nutritional status within a litter. After maturation, we
 subjected mice to five repeated torpor induction trials involving 24 hours
 of fasting and 5 days of recovery. Half of the female mice displayed great
 individual variation in TE, whereas male mice rarely exhibited daily
 torpor. In females, RBW at birth influenced TE, irrespective of body
 weight in adulthood; thus, female mice born with low RBWs displayed high
 TE in adulthood. In conclusion, we provide evidence that TE in mice
 differs among littermates, and that this variation is linked closely to
 heterogeneous nutritional experiences during the foetal period.
description: Kato et
 al_Fig1This file include data
 for Figure 1. We estimated the correlations between body weight (BW) on
 postnatal day (PND) 0 and subsequent BWs to clarify the long-term effect
 of birth weight on their development.Kato et
 al_Fig2This file include data
 for Figure 2. The figure shows four unique body temperature patterns and
 torpor expression induced by fasting.Kato et
 al_Fig3This file include data
 for Figure 3.Kato et
 al_Fig4This file include data
 for Figure 4.Kato et
 al_FigS1This file include data
 for Figure S1. This figure shows the torpor expression in female mice we
 tested.Kato et
 al_FigS2This file include data
 for Figure S2.Kato et
 al_FigS3This file include data
 for Figure S3. This figure shows the torpor expression in male mice we
 tested.Kato et
 al_bodyweightThis file include body
 weight data from 114 mice (10 litters). Each sheet include actual
 bodyweight data, relative body weight data and body weight immediately
 before fasting in torpor induction trials,
 respectively.Kato et al_logger
 weightKato et
 al_bodytemperatureThis file include all of
 body temperature data recorded by data loggers.Kato et al_torpor bout
 lengthWe calculated the length
 of torpor expression using a formula described in this
 file.Kato et al_glmer
 analysisThis file include data
 for our generalised linear mixed model analysis.
DOI: 10.5061/dryad.4qh45
title: Data from: Positive severity feedback between consecutive fires in dry eucalypt forests of southern Australia

description: Fire regimes have long-term effects on ecosystems which can be subtle,
 requiring study at a large spatial scale and temporal scale to fully
 appreciate. The way in which multiple fires interact to create a fire
 regime is poorly understood, and the relationship between the severities
 of consecutive fires has not been studied in Australia. By overlaying
 remotely sensed severity maps, our study investigated how the severity of
 a fire is influenced by previous fire severity. This was done by sampling
 points at 500-m spacing across 53 fires in dry eucalypt forests of
 southeast Australia, over a range of time since fire spanning every major
 fire season for 30 yr. Generalized additive models were used to determine
 the influence of previous severity on the probability of crown fire and
 understory fire, controlling for differences in time since fire,
 topography, and weather. We found that a crown fire is more than twice as
 likely after a previous crown fire than previous understory fire, and
 understory fire is more likely after previous understory fire. Our
 findings are in line with the results of studies from North America and
 suggest that severe fire promotes further fire. This may be evidence of a
 runaway positive feedback, which can drive ecological change, and lead to
 a mosaic of divergent vegetation, but research into more than two
 consecutive fires is needed to explore this. Our results also suggest that
 a low-severity prescribed fire may be a useful management option for
 breaking a cycle of crown fires.
description: Positive fire severity
 feedback in SE AustraliaThis data file contains
 R code for the statistical analysis of severity feedbacks between fires in
 South-East Australia.positive fire severity feedback
 code.RSeverity feedback
 dataThis is the original
 data used for the analysis of severity feedbacks.gis_data.csv
DOI: 10.5061/dryad.3878q
title: Data from: Black spot infection in juvenile steelhead trout increases with stream temperature in northern California

description: Climate change will increase water temperature in rivers and streams that
 provide critical habitat for imperiled species. Warmer water temperatures
 will influence the intensity and nature of biotic interactions, including
 parasitism. To better understand the factors influencing a neascus-type
 parasitic infection known as black spot disease, we examined the
 relationship between infection rate in juvenile steelhead trout
 (Oncorhynchus mykiss), abundance of another intermediate host (ramshorn
 snail, Planorbella trivolvis), and water temperature. We quantified
 infection patterns of trout at seven sites within the South Fork Eel River
 in northern California, visiting each site on three different occasions
 across the summer, and recording water temperature at each site. We also
 quantified infection patterns in trout captured from two tributaries to
 the South Fork Eel River. Overall, trout infection rates were highest in
 sites with the warmest temperatures. The abundance of ramshorn snails was
 positively related to both water temperature and black spot infection
 rates in juvenile trout. Both snail abundance and infection rates
 increased rapidly above a 23 °C daily maximum, suggesting a threshold
 effect at this temperature. We suggest that warmer temperatures are
 associated with environmental and biotic conditions that increase black
 spot disease prevalence in threatened steelhead trout. A comparison of our
 results with similar data collected from a more northern latitude suggests
 that salmonids in California may be warm-adapted in terms of their
 parasite susceptibility.
description: Steelhead_infections_dataThis data file includes capture date and location of steelhead trout along the South Fork Eel River. It also includes measurements of their fork length (FL) in mm and weight (Wt) in g. The last column is whether or not the fish was infected by black spot (bs_infection).stream_temperature_dataStream temperatures (in Celsius) taken along the South Fork Eel River in summer 2014. Coordinates included. Temperatures were recorded with HOBO temperature loggers.snail_count_dataSnail host (Planorbella trivolvis) of black spot were surveyed for 15 minutes within a 3m X 2m quadrat on July 14, 2014 at seven sites on the South Fork Eel River. The last column is the average monthly maximum temperature (AMM), in Celsius, centered on the survey date.Schaaf et al 2017_analysesR script for temperature summary and statistical analyses presented in the manuscript.