cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11300015.v1
title: MOESM6 of Transcriptome profiling of posterior kidney of brown trout, Salmo trutta, during proliferative kidney disease

description: Additional file 6: Table S4. List of all pathways mapped in KEGG pathway analysis.
DOI: 10.6084/m9.figshare.11299991
title: MOESM3 of Transcriptome profiling of posterior kidney of brown trout, Salmo trutta, during proliferative kidney disease

description: Additional file 3: Table S3. Gene ontology terms enriched by up- and downregulated genes separately.
DOI: 10.6084/m9.figshare.11299982
title: MOESM2 of Transcriptome profiling of posterior kidney of brown trout, Salmo trutta, during proliferative kidney disease

description: Additional file 2: Table S2. List of all significant differentially expressed up- and downregulated genes.
DOI: 10.6084/m9.figshare.11299991.v1
title: MOESM3 of Transcriptome profiling of posterior kidney of brown trout, Salmo trutta, during proliferative kidney disease

description: Additional file 3: Table S3. Gene ontology terms enriched by up- and downregulated genes separately.
DOI: 10.6084/m9.figshare.11299982.v1
title: MOESM2 of Transcriptome profiling of posterior kidney of brown trout, Salmo trutta, during proliferative kidney disease

description: Additional file 2: Table S2. List of all significant differentially expressed up- and downregulated genes.
DOI: 10.6084/m9.figshare.11299955
title: MOESM1 of Comparative genomics of Mycoplasma pneumoniae isolated from children with pneumonia: South Korea, 2010â€“2016

description: Additional file 1: P1 type and MLST type of the 30 strains from this study and 48 strains from NCBI.
DOI: 10.6084/m9.figshare.11299955.v1
title: MOESM1 of Comparative genomics of Mycoplasma pneumoniae isolated from children with pneumonia: South Korea, 2010â€“2016

description: Additional file 1: P1 type and MLST type of the 30 strains from this study and 48 strains from NCBI.
DOI: 10.6084/m9.figshare.11299880
title: MOESM1 of Disentangling Trypanosoma cruzi transmission cycle dynamics through the identification of blood meal sources of natural populations of Triatoma dimidiata in Yucatán, Mexico

description: Additional file 1: Table S1. Detailed information of Triatoma dimidiata specimens included in this study.
DOI: 10.6084/m9.figshare.11299883
title: MOESM1 of Efficient depletion of ribosomal RNA for RNA sequencing in planarians

description: Additional file 1: Sequences of DNA oligonucleotides used for the removal of planarian rRNA. Assembled planarian rRNA sequences are indicated.
DOI: 10.6084/m9.figshare.11299880.v1
title: MOESM1 of Disentangling Trypanosoma cruzi transmission cycle dynamics through the identification of blood meal sources of natural populations of Triatoma dimidiata in Yucatán, Mexico

description: Additional file 1: Table S1. Detailed information of Triatoma dimidiata specimens included in this study.
DOI: 10.6084/m9.figshare.11299883.v1
title: MOESM1 of Efficient depletion of ribosomal RNA for RNA sequencing in planarians

description: Additional file 1: Sequences of DNA oligonucleotides used for the removal of planarian rRNA. Assembled planarian rRNA sequences are indicated.
DOI: 10.6084/m9.figshare.11299805
title: MOESM3 of ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

description: Additional file 3. Matches of the 32 motifs from Additional file 2 to RBP motifs from CISBP-RNA database.
DOI: 10.6084/m9.figshare.11299799
title: MOESM2 of ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

description: Additional file 2. Motif file for the 32 filters from the CNN model.
DOI: 10.6084/m9.figshare.11299805.v1
title: MOESM3 of ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

description: Additional file 3. Matches of the 32 motifs from Additional file 2 to RBP motifs from CISBP-RNA database.
DOI: 10.6084/m9.figshare.11299799.v1
title: MOESM2 of ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

description: Additional file 2. Motif file for the 32 filters from the CNN model.
DOI: 10.6084/m9.figshare.11299562
title: MOESM2 of Functional analysis of granulocyte and monocyte subpopulations in neonates

description: Additional file 2: Figure S1. A/B Gating strategy for granulocyte and monocyte subpopulations and their activation marker: Representative probe of a new-born infant for activation marker on granulocyte and monocyte subpopulation. After single cell gating and determination of living cells by ZOMBIE, cells were gated by SSC-A and subpopulation marker (CD14, CD16, CD62L) in their subpopulation according to FMOs. CD14dim monocytes and CD16dim neutrophil population was distinguished by gating the 25th percentile of main neutrophil population.
DOI: 10.6084/m9.figshare.11299553
title: MOESM1 of Functional analysis of granulocyte and monocyte subpopulations in neonates

description: Additional file 1: Table S1. Characteristics of analysed populations for activation and burst measurements in comparison to healthy young adults. Values presented as mean Â± SD
DOI: 10.6084/m9.figshare.11299553.v1
title: MOESM1 of Functional analysis of granulocyte and monocyte subpopulations in neonates

description: Additional file 1: Table S1. Characteristics of analysed populations for activation and burst measurements in comparison to healthy young adults. Values presented as mean Â± SD
DOI: 10.6084/m9.figshare.11299562.v1
title: MOESM2 of Functional analysis of granulocyte and monocyte subpopulations in neonates

description: Additional file 2: Figure S1. A/B Gating strategy for granulocyte and monocyte subpopulations and their activation marker: Representative probe of a new-born infant for activation marker on granulocyte and monocyte subpopulation. After single cell gating and determination of living cells by ZOMBIE, cells were gated by SSC-A and subpopulation marker (CD14, CD16, CD62L) in their subpopulation according to FMOs. CD14dim monocytes and CD16dim neutrophil population was distinguished by gating the 25th percentile of main neutrophil population.
DOI: 10.6084/m9.figshare.11299493
title: MOESM2 of Comparative analysis of functional assay evidence use by ClinGen Variant Curation Expert Panels

description: Additional file 2: Specific instance of assay literature curation results. Table S1. Summary of CDH1 variant-level curation. Table S2. Summary of CDH1 specific instance-level curation. Table S3. Comparison of CDH1 functional assay findings to variant evidence in ClinVar. Table S4. Summary of Hearing Loss variant-level curation. Table S5. Summary of Hearing Loss specific instance-level curation. Table S6. Summary of Inherited Cardiomyopathy (MYH7) variant-level curation. Table S7. Summary of Inherited Cardiomyopathy (MYH7) specific instance-level curation. Table S8. Summary of PAH variant-level curation. Table S9. Summary of PAH specific instance-level curation. Table S10. Summary of PTEN variant-level curation. Table S11. Summary of PTEN specific instance-level curation. Table S12. Summary of RASopathy variant-level curation. Table S13. Summary of RASopathy specific instance-level curation.
DOI: 10.6084/m9.figshare.11299493.v1
title: MOESM2 of Comparative analysis of functional assay evidence use by ClinGen Variant Curation Expert Panels

description: Additional file 2: Specific instance of assay literature curation results. Table S1. Summary of CDH1 variant-level curation. Table S2. Summary of CDH1 specific instance-level curation. Table S3. Comparison of CDH1 functional assay findings to variant evidence in ClinVar. Table S4. Summary of Hearing Loss variant-level curation. Table S5. Summary of Hearing Loss specific instance-level curation. Table S6. Summary of Inherited Cardiomyopathy (MYH7) variant-level curation. Table S7. Summary of Inherited Cardiomyopathy (MYH7) specific instance-level curation. Table S8. Summary of PAH variant-level curation. Table S9. Summary of PAH specific instance-level curation. Table S10. Summary of PTEN variant-level curation. Table S11. Summary of PTEN specific instance-level curation. Table S12. Summary of RASopathy variant-level curation. Table S13. Summary of RASopathy specific instance-level curation.
DOI: 10.6084/m9.figshare.11299478
title: MOESM3 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 3: Table S3. Full Results.
DOI: 10.6084/m9.figshare.11299472
title: MOESM2 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 2: Table S2. Correlations Matrix.
DOI: 10.6084/m9.figshare.11299478.v1
title: MOESM3 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 3: Table S3. Full Results.
DOI: 10.6084/m9.figshare.11299466
title: MOESM1 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 1: Table S1. Time Use Diary Categories.
DOI: 10.6084/m9.figshare.11299466.v1
title: MOESM1 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 1: Table S1. Time Use Diary Categories.
DOI: 10.6084/m9.figshare.11299472.v1
title: MOESM2 of Type of screen time moderates effects on outcomes in 4013 children: evidence from the Longitudinal Study of Australian Children

description: Additional file 2: Table S2. Correlations Matrix.
DOI: 10.6084/m9.figshare.11299319
title: Lunar_secondary_crater_data_v1

description: This is the supplementary data associated with the paper titled Lunar Secondary Craters and Estimated Ejecta Block Sizes Reveal a Scale-dependent Fragmentation Trend published in the Journal of Geophysical Research.<br>Caption for Table: Table S2 is an excel spreadsheet with six tabs of data for the six secondary crater fields presented in this paper. It includes the diameters (in km) and locations (center latitude and longitude in degrees) for each secondary crater presented in the paper.
DOI: 10.6084/m9.figshare.11299298
title: Prediction model

description: Prediction model developed
DOI: 10.6084/m9.figshare.11299298.v1
title: Prediction model

description: Prediction model developed
DOI: 10.6084/m9.figshare.11299265
title: Amoeboaphelidium_protococcarum_X4_protein_annotation

description: EggNOG:Preferred_name - Predicted gene name Orthogroups - ID of the orthogroup constructed for Amoeboaphelidium protococcarum (X4) and Paraphelidium tribonemae NCBInr_hit - best hit with NCBI non-redundant protein database NCBInr_identity(%) - best hit identity percentage SwissProt_hit - best hit with SwissProt protein database SwissProt_identity (%) - best hit identity percentage Domain_arch - reconstructed protein architecture based on analysis of comparison results with a PfamAdatabase EggNOG:GO_terms - comma delimited list of predicted Gene Ontology terms EggNOG:EC_number - the Enzyme Commission number (EC number) EggNOG:KEGG_KO - comma delimited list of predicted KEGG KOs EggNOG:KEGG_Pathway - comma delimited list of predicted KEGG Pathways EggNOG:KEGG_Module - predicted KEGG Module EggNOG:KEGG_Reaction - predicted KEGG Reaction EggNOG:rclass - predicted KEGG Reaction Class EggNOG:BRITE - predicted KEGG BRITE EggNOG:KEGG_TC - predicted KEGG TC EggNOG:CAZy - best hit with Carbohydrate-Active enZYmes Database EggNOG:BiGG_Reaction - comma delimited list of predicted BiGG metabolic reactions EggNOG:OG - comma delimited list of matching eggNOG Orthologous Groups EggNOG:COG_cat - COG functional category inferred from best matching OG EggNOG:Description - eggNOG functional description inferred from best matching OG
DOI: 10.6084/m9.figshare.11299262
title: Letters to the Editor on the Zika Virus: Data2

description: Microsoft Excel file containing Web of Science citation reports for 5 categories of Letters. Column T is Times Cited.<br>
DOI: 10.6084/m9.figshare.11299265.v1
title: Amoeboaphelidium_protococcarum_X4_protein_annotation

description: EggNOG:Preferred_name - Predicted gene name Orthogroups - ID of the orthogroup constructed for Amoeboaphelidium protococcarum (X4) and Paraphelidium tribonemae NCBInr_hit - best hit with NCBI non-redundant protein database NCBInr_identity(%) - best hit identity percentage SwissProt_hit - best hit with SwissProt protein database SwissProt_identity (%) - best hit identity percentage Domain_arch - reconstructed protein architecture based on analysis of comparison results with a PfamAdatabase EggNOG:GO_terms - comma delimited list of predicted Gene Ontology terms EggNOG:EC_number - the Enzyme Commission number (EC number) EggNOG:KEGG_KO - comma delimited list of predicted KEGG KOs EggNOG:KEGG_Pathway - comma delimited list of predicted KEGG Pathways EggNOG:KEGG_Module - predicted KEGG Module EggNOG:KEGG_Reaction - predicted KEGG Reaction EggNOG:rclass - predicted KEGG Reaction Class EggNOG:BRITE - predicted KEGG BRITE EggNOG:KEGG_TC - predicted KEGG TC EggNOG:CAZy - best hit with Carbohydrate-Active enZYmes Database EggNOG:BiGG_Reaction - comma delimited list of predicted BiGG metabolic reactions EggNOG:OG - comma delimited list of matching eggNOG Orthologous Groups EggNOG:COG_cat - COG functional category inferred from best matching OG EggNOG:Description - eggNOG functional description inferred from best matching OG
DOI: 10.6084/m9.figshare.11299256
title: SV_Amoeboaphelidium_protococcarum_X4_vs_FD95

description: File containing information about the structural variations between the genomes of two strains ( X4 and FD95) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299250
title: SV_Amoeboaphelidium_protococcarum_X4_vs_X5

description: File containing information about the structural variations between the genomes of two strains ( X4 and X5) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299247
title: VCF_Amoeboaphelidium_protococcarum_X4_vs_FD95

description: VCF-file containing information about the differences between the genomes of two strains ( X4 and FD95) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299256.v1
title: SV_Amoeboaphelidium_protococcarum_X4_vs_FD95

description: File containing information about the structural variations between the genomes of two strains ( X4 and FD95) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299241
title: VCF_Amoeboaphelidium_protococcarum_X4_vs_X5

description: VCF-file containing information about the differences between the genomes of two strains ( X4 and X5) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299244
title: Letters to the Editor on the Zika Virus: Data1

description: Microsoft Excel file containing citations for 499 articles, category, number of authors, number of references, graphics, funding<br>
DOI: 10.6084/m9.figshare.11299247.v1
title: VCF_Amoeboaphelidium_protococcarum_X4_vs_FD95

description: VCF-file containing information about the differences between the genomes of two strains ( X4 and FD95) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299250.v1
title: SV_Amoeboaphelidium_protococcarum_X4_vs_X5

description: File containing information about the structural variations between the genomes of two strains ( X4 and X5) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299241.v1
title: VCF_Amoeboaphelidium_protococcarum_X4_vs_X5

description: VCF-file containing information about the differences between the genomes of two strains ( X4 and X5) of the Amoeboaphelidium protococcarum
DOI: 10.6084/m9.figshare.11299133
title: Amblyomma cajennense.xlsx

description: En el documento se muestran las mediciones realizadas a las principales estructuras morfológicas de interés taxonómico para las garrapatas en individuos de un aislado de campo de garrapatas del complejo <i>Amblyomma cajennense</i> (todas expresadas en mm). Se ofrecen las mediciones tomadas en individuos de ambos sexos y se especifican a partir de imágenes cómo se tomaron las mismas. <br>
DOI: 10.6084/m9.figshare.11299133.v1
title: Amblyomma cajennense.xlsx

description: En el documento se muestran las mediciones realizadas a las principales estructuras morfológicas de interés taxonómico para las garrapatas en individuos de un aislado de campo de garrapatas del complejo <i>Amblyomma cajennense</i> (todas expresadas en mm). Se ofrecen las mediciones tomadas en individuos de ambos sexos y se especifican a partir de imágenes cómo se tomaron las mismas. <br>
DOI: 10.6084/m9.figshare.11299103
title: Microsatellite_data_BM_Maipo_River.xlsx

description: Genotype table for eight microsatellite loci from the silverside Basilichthys microlepidotus inhabiting the Maipo River basin. In total 6 populations were analyzed<br>
DOI: 10.6084/m9.figshare.11299118
title: Wikipedia Abusive Conversations

description: We propose a corpus of Wikipedia conversations, with comment-level abuse annotations of different types
DOI: 10.6084/m9.figshare.11299052
title: Dataset for: Curved or linear: Predicting the 3-dimensional structure of α-helical antimicrobial peptides in an amphipathic environment

description: α-Helical membrane-active antimicrobial peptides (AMPs) are known to act via a range of mechanisms including the formation of barrel-stave and toroidal pores, and the micellisation of the membrane (carpet mechanism). Different mechanisms imply the peptides adopt different 3D-structures when bound at the water-membrane interface, a highly amphipathic environment. Here an evolutionary algorithm is used to predict the 3D-structure of a range of α-helical membrane-active AMPs at the water-membrane interface by optimising amphipathicity. This amphipathic structure prediction (ASP) is capable of distinguishing between curved and linear peptides solved experimentally, potentially allowing the activity and mechanism of action of different membrane-active AMPs to be predicted. The ASP algorithm is accessible via a web interface at http://atb.uq.edu.au/asp/.
DOI: 10.6084/m9.figshare.11299025
title: Anda

description: rsk3
DOI: 10.6084/m9.figshare.11299052.v1
title: Dataset for: Curved or linear: Predicting the 3-dimensional structure of α-helical antimicrobial peptides in an amphipathic environment

description: α-Helical membrane-active antimicrobial peptides (AMPs) are known to act via a range of mechanisms including the formation of barrel-stave and toroidal pores, and the micellisation of the membrane (carpet mechanism). Different mechanisms imply the peptides adopt different 3D-structures when bound at the water-membrane interface, a highly amphipathic environment. Here an evolutionary algorithm is used to predict the 3D-structure of a range of α-helical membrane-active AMPs at the water-membrane interface by optimising amphipathicity. This amphipathic structure prediction (ASP) is capable of distinguishing between curved and linear peptides solved experimentally, potentially allowing the activity and mechanism of action of different membrane-active AMPs to be predicted. The ASP algorithm is accessible via a web interface at http://atb.uq.edu.au/asp/.
DOI: 10.6084/m9.figshare.11299007
title: Phylogenomics and mitochondrial genome evolution of the gall-associated doryctine wasp genera (Hymenoptera: Braconidae)

description: The braconid subfamily Doryctinae is a cosmopolitan, highly diverse group of wasps mainly represented by parasitoid species. In this subfamily, however, there is a group of mainly Neotropical genera whose species are associated with galls of several vascular plant families. Previous molecular phylogenetic studies based on a few markers consistently recovered the monophyly of this group, though various relationships among genera and the monophyly of its most speciose genus, <i>Allorhogas</i> Gahan, remained unresolved. We characterized the mitogenomes of 13 representative species of the gall-associated doryctine clade and performed a phylogenomic analysis with both mitogenome and ultraconserved element (UCE) DNA sequence data to assess the classification of Doryctinae and to examine the evolution of phytophagy within the group. We found different patterns of tRNA gene rearrangements, two of which are present in most of the ingroup taxa. All phylogenetic analyses yielded highly similar, well-supported topologies that are congruent with relationships reported in previous studies. The resulting phylogenies confirmed <i>Percnobracon</i> as sister to the remaining genera and supported two separate clades whose genera are exclusively associated with <i>Ficus</i> (Moraceae). <i>Allorhogas</i> is confirmed to be polyphyletic. The combined evidence also supported a main <i>Allorhogas</i> clade composed of multiple phytophagous species that feed on at least five different host plant families. Further rearing records and phylogenetic studies are needed to examine host plant shifts and to broaden our understanding of a poorly studied radiation of gall-associated wasps.
DOI: 10.6084/m9.figshare.11299010
title: Salivary gland and proventriculus radial intensity

description: Two folders contain data for proventriculus (Proventriculus.zip) and salivary gland (Salivary gland.zip) nuclei. Each folder has two subfolders with measurements of wild-type (wt) and LamA25 mutant nuclei split by experiment. Each .csv table in the subfolders contains radial fluorescence intensity data for an individual nucleus. The tables consist of the X and Y columns, where the X column comprises the radial position (in pixels) and the Y column comprises the integrated radial intensity in the corresponding positions. The integrated radial intensity is shown in default conventional units generated by “Radial profile plot" ImageJ plugin, which is a sum of the pixel values around a circle within the nuclear disk divided by the number of pixels in the circle where intensity is measured.
DOI: 10.6084/m9.figshare.11299007.v1
title: Phylogenomics and mitochondrial genome evolution of the gall-associated doryctine wasp genera (Hymenoptera: Braconidae)

description: The braconid subfamily Doryctinae is a cosmopolitan, highly diverse group of wasps mainly represented by parasitoid species. In this subfamily, however, there is a group of mainly Neotropical genera whose species are associated with galls of several vascular plant families. Previous molecular phylogenetic studies based on a few markers consistently recovered the monophyly of this group, though various relationships among genera and the monophyly of its most speciose genus, <i>Allorhogas</i> Gahan, remained unresolved. We characterized the mitogenomes of 13 representative species of the gall-associated doryctine clade and performed a phylogenomic analysis with both mitogenome and ultraconserved element (UCE) DNA sequence data to assess the classification of Doryctinae and to examine the evolution of phytophagy within the group. We found different patterns of tRNA gene rearrangements, two of which are present in most of the ingroup taxa. All phylogenetic analyses yielded highly similar, well-supported topologies that are congruent with relationships reported in previous studies. The resulting phylogenies confirmed <i>Percnobracon</i> as sister to the remaining genera and supported two separate clades whose genera are exclusively associated with <i>Ficus</i> (Moraceae). <i>Allorhogas</i> is confirmed to be polyphyletic. The combined evidence also supported a main <i>Allorhogas</i> clade composed of multiple phytophagous species that feed on at least five different host plant families. Further rearing records and phylogenetic studies are needed to examine host plant shifts and to broaden our understanding of a poorly studied radiation of gall-associated wasps.
DOI: 10.6084/m9.figshare.11299025.v1
title: Anda

description: rsk3
DOI: 10.6084/m9.figshare.11298992
title: GSM2390642_EPAS1_ChIPSeq data

description: epas chip seq