cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21970664.v1
title: Supplementary file 3

description: Functional enrichment (Gene Ontology enrichment) results from initial exploration of significant maternal mtDEG interaction gene sets identified during TcGSA. Excel spreadsheet with five tabs, corresponding to the five mtDEGs with interaction genes that were significantly affected by gestational age and condition. Only Biological Process is reported, as this was an initial exploration to determine gene sets of interest for later Ingenuity Pathway Analysis testing.
DOI: 10.6084/m9.figshare.21970667.v1
title: Supplementary file 4

description: Input data for Ingenuity Pathway Analysis testing. Excel spreadsheet containing fold change and adjusted p-value at each gestational ages (excluding delivery) for mtDEG interaction genes in gene sets of interest (<em>MRPL38</em>, <em>FKBP8</em>).
DOI: 10.6084/m9.figshare.21970667
title: Supplementary file 4

description: Input data for Ingenuity Pathway Analysis testing. Excel spreadsheet containing fold change and adjusted p-value at each gestational ages (excluding delivery) for mtDEG interaction genes in gene sets of interest (<em>MRPL38</em>, <em>FKBP8</em>).
DOI: 10.6084/m9.figshare.21970670
title: Supplementary file 5

description: Functional enrichment (Gene Ontology enrichment) results and plotting data for maternal at delivery and fetal at delivery. Excel spreadsheet with four tabs. Tab 1: plotting data for enriched maternal and fetal biological processes at delivery; Tab 2: plotting data for enriched maternal and fetal cellular components at delivery; Tab 3: maternal functional enrichment results (biological process, cellular component); Tab 4: fetal functional enrichment results (biological process, cellular component); Tab 5: expression data for maternal mtDEG interaction genes at delivery and associated Uniprot IDs; Tab 6: expression data for fetal mtDEG interaction genes at delivery and associated Uniprot IDs
DOI: 10.6084/m9.figshare.21970670.v1
title: Supplementary file 5

description: Functional enrichment (Gene Ontology enrichment) results and plotting data for maternal at delivery and fetal at delivery. Excel spreadsheet with four tabs. Tab 1: plotting data for enriched maternal and fetal biological processes at delivery; Tab 2: plotting data for enriched maternal and fetal cellular components at delivery; Tab 3: maternal functional enrichment results (biological process, cellular component); Tab 4: fetal functional enrichment results (biological process, cellular component); Tab 5: expression data for maternal mtDEG interaction genes at delivery and associated Uniprot IDs; Tab 6: expression data for fetal mtDEG interaction genes at delivery and associated Uniprot IDs
DOI: 10.6084/m9.figshare.21970694
title: Supplementary Tables 1-6

description: <strong>Table S1.</strong> Subject characteristics – mutational load measurements in peripheral mononuclear blood cells. <br> <strong>Table S2. </strong>Data structuring for maternal DESeq2 contrasts. PC1 eigen values for each collection were investigated for significant stratification by covariates using linear models. Covariates with a significant effect on PC1 eigen value stratification were included in DESeq model for respective collection contrasts (columns). P-value &lt; 0.1 used to allow for greater sensitivity in DESeq model. <br> <strong>Table S3.</strong> mtDEGs detected in maternal and fetal tissues. mtDEGs were identified via matching of DEGs to MitoCarta3.0 databases <br> <strong>Table S4:</strong> Mitochondrial interaction gene sets analyzed by TcGSA. Bold values represent significant gene sets. No gene sets were significant in null-model testing <br> <strong>Table S5.</strong> References supporting classification of <em>MRPL38</em> and <em>FKBP8</em> gene set pathway enrichments under the broader classifications of “Cell death/survival” and “Immune system”.
DOI: 10.26093/cds/vizier.36490083
title: Milky Way nuclear disk KMOS survey

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A KMOS survey of the nuclear disk of the Milky Way. I: Survey design and metallicities.' (bibcode: 2021A&A...649A..83F)
DOI: 10.26093/cds/vizier.19030096
title: The {mu}Tau Association (MUTA)

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The {mu}Tau Association: a 60 Myr old coeval group at 150pc from the Sun' (bibcode: 2020ApJ...903...96G)
DOI: 10.6084/m9.figshare.22782404
title: Dasypeltis data

description: This study examined if African egg-eating snakes show preference for which eggs they eat.
DOI: 10.6084/m9.figshare.22790294
title: myBigBed2.bb

description: Testing BigBed upload to UCSC.
DOI: 10.6084/m9.figshare.22790294.v1
title: myBigBed2.bb

description: Testing BigBed upload to UCSC.
DOI: 10.6084/m9.figshare.21675692.v6
title: ohun: optimizing sound event detection

description: Supporting information for the paper describing the R package "ohun: optimizing sound event detection". <br> A preprint of this manuscript is found at: https://www.biorxiv.org/content/10.1101/2022.12.13.520253v1
DOI: 10.6084/m9.figshare.22790315.v1
title: Additional file 1 of Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability

description: Additional file 1: Table S1. Sample information and viral identification statistics from Antarctic metagenomes. Table S2. Final viral catalog sequence information. Table S3. DRAM-v distilled annotations for predicted phage AMGs. Figure S1. Taxonomic classification of viral clusters (VCs) that include reference genomes. Figure S2. Comparison of host predictions between MAG and RefSeq databases.
DOI: 10.6084/m9.figshare.22790315
title: Additional file 1 of Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability

description: Additional file 1: Table S1. Sample information and viral identification statistics from Antarctic metagenomes. Table S2. Final viral catalog sequence information. Table S3. DRAM-v distilled annotations for predicted phage AMGs. Figure S1. Taxonomic classification of viral clusters (VCs) that include reference genomes. Figure S2. Comparison of host predictions between MAG and RefSeq databases.
DOI: 10.6084/m9.figshare.22790375
title: Additional file 2 of Six addiction components of problematic social media use in relation to depression, anxiety, and stress symptoms: a latent profile analysis and network analysis

description: Additional file 2: Supplementary Table 1. Correlation matrix of BSMAS and DASS-21 items.
DOI: 10.6084/m9.figshare.22790375.v1
title: Additional file 2 of Six addiction components of problematic social media use in relation to depression, anxiety, and stress symptoms: a latent profile analysis and network analysis

description: Additional file 2: Supplementary Table 1. Correlation matrix of BSMAS and DASS-21 items.
DOI: 10.6084/m9.figshare.22790426
title: Additional file 1 of SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes

description: Additional file 1.
DOI: 10.6084/m9.figshare.22790426.v1
title: Additional file 1 of SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes

description: Additional file 1.
DOI: 10.25345/c5f47h431
title: MassIVE MSV000091896 - JCVI HS gut microbiome NAM1-65 JU002-022
title: The stool samples were first aliquoted to microtubes with wet weight around 20-30mg, and added with 200ul of SDS buffer (5%SDS, 100mM Tris-HCl, pH8.0), 10mM TCEP and 40mM CAA, and boiled at 95C for 10min. The samples were centrifuged at 13000rpm for 30min, and supernatants were collected for protein digestion, which was performed following the Suspension Trapping (STrap) protocol using in-house packed filters as described previously. The digests were desalted using C18 based StageTip. For LC-MS/MS analysis, a nanoLC system coupled with FAIMS Pro interface and Orbitrap Eclipse mass spec was used. MaxQuant and Andromeda software suite were used for proteome identification and quantitation.
DOI: 10.6084/m9.figshare.22790494
title: Additional file 1 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 1: Table S1. List of 2743 BR responsive genes in Maize determined by RNA-seq.
DOI: 10.6084/m9.figshare.22790494.v1
title: Additional file 1 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 1: Table S1. List of 2743 BR responsive genes in Maize determined by RNA-seq.
DOI: 10.6084/m9.figshare.22790500
title: Additional file 3 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 3: Table S2. List of 17463 putative ZmBZR1 binding sites of the B73 inbred line.
DOI: 10.6084/m9.figshare.22790500.v1
title: Additional file 3 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 3: Table S2. List of 17463 putative ZmBZR1 binding sites of the B73 inbred line.
DOI: 10.6084/m9.figshare.22790503
title: Additional file 4 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 4: Table S3. List of 6371 ZmBZR1 target genes. Target genes were defined if the gene CDS +5 kb upstream or -1 kb downstream overlapped with a ZmBZR1 peak.
DOI: 10.6084/m9.figshare.22790503.v1
title: Additional file 4 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 4: Table S3. List of 6371 ZmBZR1 target genes. Target genes were defined if the gene CDS +5 kb upstream or -1 kb downstream overlapped with a ZmBZR1 peak.
DOI: 10.6084/m9.figshare.22790506
title: Additional file 5 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 5: Table S4. List of 2058 conserved BRZ1 target genes in Maize with orthologs in Arabidopsis.
DOI: 10.6084/m9.figshare.22790506.v1
title: Additional file 5 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 5: Table S4. List of 2058 conserved BRZ1 target genes in Maize with orthologs in Arabidopsis.
DOI: 10.6084/m9.figshare.22790509
title: Additional file 6 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 6: Table S5. List of GO-slim plant terms found enriched in Maize only BZR1 target genes, Arabidopsis only BZR1 target genes or both. Significantly over-enriched terms in the respective category are marked by a green background, non-enriched ones in either Arabidopsis only or maize only are marked in red, under-enriched terms are marked by red font color of the p-values. For comparison, p-values and enrichment of shared BZR1 target genes are displayed for the same categories.
DOI: 10.6084/m9.figshare.22790509.v1
title: Additional file 6 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 6: Table S5. List of GO-slim plant terms found enriched in Maize only BZR1 target genes, Arabidopsis only BZR1 target genes or both. Significantly over-enriched terms in the respective category are marked by a green background, non-enriched ones in either Arabidopsis only or maize only are marked in red, under-enriched terms are marked by red font color of the p-values. For comparison, p-values and enrichment of shared BZR1 target genes are displayed for the same categories.
DOI: 10.6084/m9.figshare.22790512
title: Additional file 7 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 7: Table S6. List of 52765 ZmBZR1 binding sites reproducible in all 6 replicas of B73xMo17 F1 hybrids and genes annotated to these regions. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes.
DOI: 10.6084/m9.figshare.22790512.v1
title: Additional file 7 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 7: Table S6. List of 52765 ZmBZR1 binding sites reproducible in all 6 replicas of B73xMo17 F1 hybrids and genes annotated to these regions. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes.
DOI: 10.6084/m9.figshare.22790515
title: Additional file 8 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 8: Table S7. List of ZmBZR1 target genes in B73xMo17 hybrids. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes. Gene names are given in B73 and Mo17 coordinates where a homologous gene exists, otherwise only one gene is listed.
DOI: 10.6084/m9.figshare.22790515.v1
title: Additional file 8 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 8: Table S7. List of ZmBZR1 target genes in B73xMo17 hybrids. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes. Gene names are given in B73 and Mo17 coordinates where a homologous gene exists, otherwise only one gene is listed.
DOI: 10.6084/m9.figshare.22790518.v1
title: Additional file 9 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 9: Table S8. List of 33267 SNPs with significant allele-specific bias in linkage groups.
DOI: 10.6084/m9.figshare.22790518
title: Additional file 9 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 9: Table S8. List of 33267 SNPs with significant allele-specific bias in linkage groups.
DOI: 10.6084/m9.figshare.22790521
title: Additional file 10 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 10: Table S9. Genomic location of the 6143 lead SNPs of allele-specific BZR1 binding site, genomic locations of ASBs and association with genes at the high-affinity allele.
DOI: 10.6084/m9.figshare.22790521.v1
title: Additional file 10 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 10: Table S9. Genomic location of the 6143 lead SNPs of allele-specific BZR1 binding site, genomic locations of ASBs and association with genes at the high-affinity allele.
DOI: 10.6084/m9.figshare.22790524
title: Additional file 11 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 11: Table S10. List of putative ASB ZmBZR1 target genes. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes. Gene names are given in B73 and Mo17 coordinates where a homologous gene exists, otherwise only one gene is listed.
DOI: 10.6084/m9.figshare.22790524.v1
title: Additional file 11 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 11: Table S10. List of putative ASB ZmBZR1 target genes. Genes with significant BZR1 binding sites from 5 kb upstream to 1 kb downstream of the TSS and TTS, respectively, were considered target genes. Gene names are given in B73 and Mo17 coordinates where a homologous gene exists, otherwise only one gene is listed.
DOI: 10.6084/m9.figshare.22790527.v1
title: Additional file 12 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 12: Table S11. ASBs overlapping with variations in motifs and/or DNA methylation.
DOI: 10.6084/m9.figshare.22790527
title: Additional file 12 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 12: Table S11. ASBs overlapping with variations in motifs and/or DNA methylation.
DOI: 10.6084/m9.figshare.22790530
title: Additional file 13 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 13: Table S12. Raw RNA-seq counts in the B73xMo17 hybrids for genes with homologs in both genome annotations. Fold-changevalues were calculated for each replicate and an average FC was calculated to be employed for further analysis. For comparison with ASB genes, only genes with differences in CDS length &lt;=50bp between B73 and Mo17 were employed.
DOI: 10.6084/m9.figshare.22790530.v1
title: Additional file 13 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 13: Table S12. Raw RNA-seq counts in the B73xMo17 hybrids for genes with homologs in both genome annotations. Fold-changevalues were calculated for each replicate and an average FC was calculated to be employed for further analysis. For comparison with ASB genes, only genes with differences in CDS length &lt;=50bp between B73 and Mo17 were employed.
DOI: 10.6084/m9.figshare.22790533
title: Additional file 14 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 14: Table S13. ASBs co-locolized within 2 kb of the 4015GWAS hits from Wallace et al. 2014
DOI: 10.6084/m9.figshare.22790533.v1
title: Additional file 14 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 14: Table S13. ASBs co-locolized within 2 kb of the 4015GWAS hits from Wallace et al. 2014
DOI: 10.6084/m9.figshare.22790536
title: Additional file 15 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 15: Table S14. Primers employed in this study.
DOI: 10.6084/m9.figshare.22790536.v1
title: Additional file 15 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 15: Table S14. Primers employed in this study.
DOI: 10.6084/m9.figshare.22790539
title: Additional file 16 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 16: Table S15. F1 samples sequencing statistics.
DOI: 10.6084/m9.figshare.22790539.v1
title: Additional file 16 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 16: Table S15. F1 samples sequencing statistics.
DOI: 10.6084/m9.figshare.22790542
title: Additional file 17 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 17: Table S16. MACS3 HASCh-seq peaks of reads that map uniquely to one or both parents. BZR1-YFP replicates vs. non-transgenic negative control were used for the peak calling.
DOI: 10.6084/m9.figshare.22790542.v1
title: Additional file 17 of Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize

description: Additional file 17: Table S16. MACS3 HASCh-seq peaks of reads that map uniquely to one or both parents. BZR1-YFP replicates vs. non-transgenic negative control were used for the peak calling.
DOI: 10.6084/m9.figshare.22790594
title: Additional file 2 of Indigenous maternal health and health services within Canada: a scoping review

description: Additional file 2. Characteristics of the studies included in the scoping review.
DOI: 10.6084/m9.figshare.22790594.v1
title: Additional file 2 of Indigenous maternal health and health services within Canada: a scoping review

description: Additional file 2. Characteristics of the studies included in the scoping review.
DOI: 10.6084/m9.figshare.21675692.v7
title: ohun: optimizing sound event detection

description: Supporting information for the paper describing the R package "ohun: optimizing sound event detection". <br> A preprint of this manuscript is found at: https://www.biorxiv.org/content/10.1101/2022.12.13.520253v1
DOI: 10.5281/zenodo.7916102
title: A prototyping software engineering approach for designing and implementing model-based cloud mobile application for rationalized energy consumption

description: The dataset used in this study comprises four files containing household consumers' energy consumption records. These records are collected at hourly intervals, providing detailed information on the energy usage patterns of the households. The dataset serves as a valuable resource for analyzing energy consumption trends, developing energy management strategies, and exploring the potential for energy efficiency improvements in residential settings.
DOI: 10.5281/zenodo.7916101
title: A prototyping software engineering approach for designing and implementing model-based cloud mobile application for rationalized energy consumption

description: The dataset used in this study comprises four files containing household consumers' energy consumption records. These records are collected at hourly intervals, providing detailed information on the energy usage patterns of the households. The dataset serves as a valuable resource for analyzing energy consumption trends, developing energy management strategies, and exploring the potential for energy efficiency improvements in residential settings.
DOI: 10.15454/2vz16d/nnhr9t
title: Genowine_Evolya_Schuller_Assembly.SNP.BIALLELIC.missingRemoved-0.20.AF-0.01.vcf.gz

description: :unav
DOI: 10.15454/2vz16d/1mwztp
title: GWEvSchSampAss-WROOE.map

description: Marker file at hapmap format, used for hapFLK analysis (Wine, Rum, Mediterrannean oak, North American oak populations)
DOI: 10.15454/2vz16d/7hv2tj
title: GWEvSchSampAss-WROOE.ped

description: Genotypes file at hapmap format, used for hapFLK analysis (Wine, Rum, Mediterrannean oak and north American populations)
DOI: 10.15454/2vz16d/hfy3bl
title: GWEvSchSampAss-WCROE.map

description: Marker file at hapmap format, used for hapFLK analysis (Wine, Cheese Rum, Mediterrannean oak populations)