cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14885339
title: OpenFF Pure POPC Water Type and Short Range Interaction Tests

description: TIP3P, TIP3P-FB, and OPC3 POPC bilayer simulations with vdwtype interactions set to PME or a 0.9 nm cutoff. Both Sage 2.2.0 and 2.2.1 aux refit parameters were simulated (6 sims each).
DOI: 10.6084/m9.figshare.26561161
title: <b>Groundwater sustainability in India through non-rice dominated cropping pattern</b>

description: Datasets to prepare the main and supplemental figures.DOI: https://doi.org/10.1093/pnasnexus/pgae378Publication: <b>Groundwater sustainability in India through nonrice-dominated cropping pattern</b>Journal: <b>PNAS Nexus [</b><b>2024]</b>Authors: <b>Swarup Dangar</b><sup><strong>a</strong></sup><b> </b><b>& </b><b>Vimal Mishra</b><sup><strong>a,b</strong></sup><sup>a</sup> Civil Engineering, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India<sup>b</sup> Earth Sciences, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India
DOI: 10.6084/m9.figshare.26561161.v1
title: <b>Groundwater sustainability in India through non-rice dominated cropping pattern</b>

description: Datasets to prepare the main figures in each folder.Publication: <b>Groundwater sustainability in India through non-rice dominated cropping pattern</b>Journal: <b>PNAS Nexus</b>Authors: <b>Swarup Dangar</b><sup><strong>a</strong></sup><b> </b><b>& </b><b>Vimal Mishra</b><sup><strong>a,b</strong></sup><sup>a</sup> Civil Engineering, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India<sup>b</sup> Earth Sciences, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India<b>2024</b>
DOI: 10.6084/m9.figshare.26561161.v2
title: <b>Groundwater sustainability in India through non-rice dominated cropping pattern</b>

description: Datasets to prepare the main and supplemental figures.DOI: https://doi.org/10.1093/pnasnexus/pgae378Publication: <b>Groundwater sustainability in India through nonrice-dominated cropping pattern</b>Journal: <b>PNAS Nexus [</b><b>2024]</b>Authors: <b>Swarup Dangar</b><sup><strong>a</strong></sup><b> </b><b>& </b><b>Vimal Mishra</b><sup><strong>a,b</strong></sup><sup>a</sup> Civil Engineering, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India<sup>b</sup> Earth Sciences, Indian Institute of Technology (IIT) Gandhinagar, Gandhinagar, Gujarat, 382355, India
DOI: 10.15468/dl.jjmshf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Cetacean Sightings Survey and Southern Ocean cetacean program",
 "TaxonKey is Eubalaena australis (Desmoulins, 1822)"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004195-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aap5np
title: Occurrence Download

description: A dataset containing 1911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphiprion ocellaris Cuvier, 1830"
 ]
}

 The dataset includes 1911 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004196-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16566571
title: Analysis of laminar premixed flame structure of isooctane/2-methylfuran/air mixtures with a skeletal mechanism

description: The prospects of 2-methylfuran (2MF) as a biofuel and gasoline blend stock are quite high. Therefore, a skeletal chemical kinetic mechanism – containing 238 species and 1156 reactions – for the simulation of premixed flames involving isooctane (representing gasoline)/2MF blends is proposed in the present work. The proposed model has been validated against a wide range of experimental data at various pressures, temperatures and compositions. It is demonstrated in the present work that the proposed mechanism can predict the concentrations of gaseous soot precursors as well. Moreover, the compatibility of the NO<sub>x</sub> sub-mechanism in the present model has been assured through validations against a wide range of recent experimental data. The results obtained in this work suggest that there are little chances of co-oxidation reactions among the species generated from the initial decomposition of both isooctane and 2MF. Furthermore, there is around 26% variation in the peak laminar burning velocity when the mole fraction of 2MF is increased from 10% to 90% in isooctane/2MF blend.
DOI: 10.6084/m9.figshare.16566571.v2
title: Analysis of laminar premixed flame structure of isooctane/2-methylfuran/air mixtures with a skeletal mechanism

description: The prospects of 2-methylfuran (2MF) as a biofuel and gasoline blend stock are quite high. Therefore, a skeletal chemical kinetic mechanism – containing 238 species and 1156 reactions – for the simulation of premixed flames involving isooctane (representing gasoline)/2MF blends is proposed in the present work. The proposed model has been validated against a wide range of experimental data at various pressures, temperatures and compositions. It is demonstrated in the present work that the proposed mechanism can predict the concentrations of gaseous soot precursors as well. Moreover, the compatibility of the NO<sub>x</sub> sub-mechanism in the present model has been assured through validations against a wide range of recent experimental data. The results obtained in this work suggest that there are little chances of co-oxidation reactions among the species generated from the initial decomposition of both isooctane and 2MF. Furthermore, there is around 26% variation in the peak laminar burning velocity when the mole fraction of 2MF is increased from 10% to 90% in isooctane/2MF blend.
DOI: 10.34740/kaggle/dsv/10779196
title: Egypt Gold Prices | Daily Updated
DOI: 10.6084/m9.figshare.28432919.v1
title: CAD-MENBI.zip

description: CAD-MENBI, an extensive dataset with white light endoscopy and ME-NBI amassed from the Peking Union Medical College Hospital. This dataset encompasses 11,971 high-quality frames across four distinct classes, derived from 868 patients.
DOI: 10.15468/dl.xj8gm5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Geelong Field Naturalists Club",
 "TaxonKey is Eubalaena australis (Desmoulins, 1822)"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004198-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrv9k8
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.30025 63.09767,12.81683 63.09767,12.81683 65.33513,9.30025 65.33513,9.30025 63.09767))",
 "OccurrenceStatus is Present",
 "TaxonKey is Crangonyx Spence Bate, 1859"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004199-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpg4p3
title: Occurrence Download

description: A dataset containing 2632835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "GadmGid is IDN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2632835 records from 972 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004194-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28409744
title: Supplementary Materials

description: Numerous cancer treatments have been studied, however the concern of chemoresistance is still prevalent in the field, and one of the proteins responsible is clusterin. In this study, potential inhibitors of clusterin were designed through fragment based drug discovery. Commercially available fragment libraries were screened according to anti-cancer activity and the rule of three and then docked. The fragment with the highest affinity then underwent fragment growing. Resulting candidate drugs were then docked and screened for toxicity. Qualitative structure-activity relationship analysis was conducted to determine the properties relevant to the affinities. 4 distinct chemical domains were determined, candidates retaining the base structure provided both anticancer potential due to their substructures as well as additional interactions with residues due to the increase in size and chemical complexity, qualities found to contribute most to activity. 194 candidate drugs showed great potential for clusterin inhibition which could serve as inhibitors or as probes. ADMET filtering was conducted to filter out for general cancer cell application, the most favourable resulting in a top 1 final candidate drug that underwent molecular dynamics. Simulations revealed good initial binding affinity and significant ligand flexibility in the latter half of the 100ns simulation.
DOI: 10.6084/m9.figshare.28409744.v1
title: Supplementary Materials

description: Numerous cancer treatments have been studied, however the concern of chemoresistance is still prevalent in the field, and one of the proteins responsible is clusterin. In this study, potential inhibitors of clusterin were designed through fragment based drug discovery. Commercially available fragment libraries were screened according to anti-cancer activity and the rule of three and then docked. The fragment with the highest affinity then underwent fragment growing. Resulting candidate drugs were then docked and screened for toxicity. Qualitative structure-activity relationship analysis was conducted to determine the properties relevant to the affinities. 4 distinct chemical domains were determined, candidates retaining the base structure provided both anticancer potential due to their substructures as well as additional interactions with residues due to the increase in size and chemical complexity, qualities found to contribute most to activity. 194 candidate drugs showed great potential for clusterin inhibition which could serve as inhibitors or as probes. ADMET filtering was conducted to filter out for general cancer cell application, the most favourable resulting in a top 1 final candidate drug that underwent molecular dynamics. Simulations revealed good initial binding affinity and significant ligand flexibility in the latter half of the 100ns simulation.
DOI: 10.15468/dl.8m3h27
title: Occurrence Download

description: A dataset listing the 229057 species recorded in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset's 229057 records were derived from 4671 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/qxyb9x
title: We are the Crystal Gems: taxonomic revision of the gem-fruited species of Commelina L. (Commelinaceae, Commelinales) and their allies

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pellegrini, Marco O. O., Cornejo, Xavier, Morais, Isa Lucia De, De Almeida, Rafael F., Michelan, Thaisa S. (2025): We are the Crystal Gems: taxonomic revision of the gem-fruited species of Commelina L. (Commelinaceae, Commelinales) and their allies. European Journal of Taxonomy 1020: 1-94, DOI: 10.5852/ejt.2025.1020.3073, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/3073/13709Abstract. We present a taxonomic revision of the gem-fruited species of Commelina and their allies. We address misapplied names, taxonomic confusion, and undescribed taxa based on a combination of macro- and micromorphological characters, ecological and reproductive data, and preliminary molecular data for Commelina. We recognise a total of 14 species, including two new species, Commelina almandina M.Pell. & Cornejo sp. nov. and C. sugariae M.Pell. sp. nov., and five reestablished ones previously treated as synonyms. We provide an identification key to the gem-fruited species of Commelina and their closest allies, as well as complete morphological descriptions, images, comments, and distribution maps for all recognised species. Species are recognised based on a unique combination of discrete vegetative (i.e., root and rhizome morphology, stem posture and growth pattern, leaf-sheath morphology, phyllotaxy, and leaf-blade morphology) and reproductive (i.e., synflorescence architecture, inflorescence position, spathe morphology, upper cincinnus development and flower production, pedicel pubescence, sepal morphology, petal morphology, filaments’ posture at anthesis, anthers and antherodes morphology, gynoecium and fruit morphology, fruit dehiscence, and seed morphology) morphological characters. We also provide comments and corrections on the taxonomy, application, and nomenclature of names historically associated with or confused with species of gem-fruited Commelina. Finally, we provide a general overview of poorly explored characters and issues plaguing the taxonomy of Commelina.
DOI: 10.15468/dl.g32wsf
title: Occurrence Download

description: A dataset containing 6306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zerynthia polyxena",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 6306 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066838-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28828817.v6
title: Source Data and Code of Salinity Thresholds Shape Global Patterns of Freshwater Biodiversity.

description: This document comprises two parts: the dataset compiled for this study and the corresponding code and source data used for the analysis.The <b>code files</b> directory contains the source data and R scripts (in Tinn-R format) for each section of the analysis. Please set the working directory and install the required R packages before running the code.Code file details as follow:Step1_Calculation of rarefied richness; Step2_Classfication of salinity gradient; Step3_Biodiversity model;Step4_Salinity threshold of diversity metrics and Beta diveristy;Step5_Relative abundance along salinity gradient.The <b>dataset</b> compiles benthic macroinvertebrate community data and corresponding salinity measurements from 701 inland lakes sampled between 1972 and 2022, across multiple continents. It includes sampling metadata and SAD (species abundance distribution) data. Salinity (or conductivity) values measured at the time of biological sampling. The dataset was assembled from publicly available databases (e.g., the US EPA's National Lakes Assessment, PANGAEA), published literature, and co-author contributions. All data sources were selected based on consistent and comparable sampling methodologies, ensuring robustness and compatibility across studies.Each sample includes information on the sampling method, date, location, SAD data, and physicochemical conditions. A rarefaction-based standardization procedure was applied to ensure comparability across studies with different sampling effects.This dataset enables researchers to explore macroinvertebrate diversity responses to freshwater salinization, assess biodiversity loss under anthropogenic pressure, and support ecological modeling or conservation planning. It is particularly relevant for global change ecology, freshwater biodiversity research, and ecological threshold detection.The dataset is shared under the Creative Commons Attribution 4.0 International License (CC BY 4.0). Users are free to reuse the data with proper citation. Ethical and legal considerations were fully addressed: all data were either publicly available or shared with permission by contributing authors. Users should cite the original paper and this dataset if used in derivative work. Some data sources may have specific citation requirements; detailed references and access information for each data source are provided in Supplementary Table1. Users are encouraged to cite original sources where indicated. No sensitive or personally identifiable information is included.For more detailed information or any questions please contact <b>email</b>: <b>laixiyi2000@163.com</b>
DOI: 10.15468/s54zaq
title: New species and records of Algonina Schillhammer & Brunke, 2018, mainly from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Chong, Tang, Liang (2023): New species and records of Algonina Schillhammer & Brunke, 2018, mainly from China. Zootaxa 5256 (5): 457-482, DOI: 10.11646/zootaxa.5256.5.3, URL: http://dx.doi.org/10.11646/zootaxa.5256.5.3AbstractFive new species of the subtribeAlgonina Schillhammer& Brunke, 2018 from China are described: Algon. kuankuoshuiensis sp. n. from Guizhou, A. daweishanus sp. n. from Yunnan, A. pseudotibetanus sp. n. from Xizang, A. huadongensis sp. n. from Zhejiang and Fujian, and Barypalpus maoershanus sp. n. from Guangxi. A new species group, Algon tibetanus species group, is established. Males of Algon tibetanus Schillhammer, 2006 and A. malayanus (Cameron, 1950) are discovered for the first time. Algon bramlettorum Schillhammer, 2006 is newly recorded from China. Additional records for nine species of Algon and one species of Barypalpus are provided. Diagnostic characters for new species are described and illustrated. A key to the genera of Algonina and a key to the Chinese species of Algon are provided.
DOI: 10.15468/dl.eawu84
title: Occurrence Download

description: A dataset containing 51981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ochlodes sylvanus",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 51981 records from 488 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066835-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.11354.40648
title: HAL Maria Dalamagka
DOI: 10.15468/w5w4dn
title: Revision of the Nearctic species of the Lasioglossum (Dialictus) gemmatum species complex (Hymenoptera: Halictidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gardner, Joel, Gibbs, Jason (2023): Revision of the Nearctic species of the Lasioglossum (Dialictus) gemmatum species complex (Hymenoptera: Halictidae). European Journal of Taxonomy 858 (1): 1-222, DOI: 10.5852/ejt.2023.858.2041, URL: http://zoobank.org/d760cf56-dda7-4a35-9a2b-bf1f7e59f313Abstract. The Lasioglossum (Dialictus) gemmatum species complex, also known as the L. tegulare species group and the L. parvum species complex, is a very common, widespread, diverse, and recognisable lineage of sweat bees, containing 22 previously described species and several known undescribed species. The species were recently revised for the eastern Nearctic region and the Greater Antilles, but remain poorly known in the western Nearctic along with most other L. (Dialictus). These characteristics make it a prime candidate for revision in ongoing taxonomic work on the western Nearctic L. (Dialictus). Here we present the results of this revision, including 10 new species descriptions, one new synonymy, a preliminary phylogeny, and keys to known Nearctic species. Species of the eastern Nearctic and a few primarily Neotropical species which can occur in the Nearctic are also included. We report that the L. (D.) gemmatum species complex is likely a monophyletic group arising from the L. (D.) comulum group, but that the enlarged tegula has arisen independently in at least two other L. (Dialictus) lineages, and it contains multiple cases of allopatric speciation. The following species are described as new: Lasioglossum (Dialictus) angelicum sp. nov., L. (D.) deludens sp. nov., L. (D.) diabolicum sp. nov., L. (D.) eremum sp. nov., L. (D.) gloriosum sp. nov., L. (D.) indagator sp. nov., L. (D.) holzenthali sp. nov., L. (D.) magnitegula sp. nov., L. (D.) profundum sp. nov., and L. (D.) rufodeludens sp. nov. Previously undescribed males of L. (D.) perparvum (Ellis, 1914) and L. (D.) pseudotegulare (Cockerell, 1896) and the female of L. (D.) gaudiale (Sandhouse, 1924) are diagnosed and figured for the first time. Lasioglossum (Dialictus) hunteri (Crawford, 1932) is a new subjective junior synonym of L. (D.) ellisiae (Sandhouse, 1924). Pre-2022 specimen records of L. (D.) hunteri and L. (D.) tegulariforme (Crawford, 1907) are attributable to a heterogeneous mix of species, and records of L. (D.) perparvum are likely attributable to L. (D.) deludens.
DOI: 10.15468/u5exrg
title: A re-appraisal of the middle-late Miocene fossil decapod crustaceans of the ‘ Faluns’ (Anjou-Touraine, France)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ossó, Àlex, Gagnaison, Cyril, Gain, Olivier (2022): A re-appraisal of the middle-late Miocene fossil decapod crustaceans of the ‘ Faluns’ (Anjou-Touraine, France). Geodiversitas 44 (6): 207-228, DOI: 10.5252/geodiversitas2022v44a6ABSTRACTThe access to a new collection of decapod crustaceans collected from the middle-late Miocene ‘Faluns’, and examination of new specimens available, have allowed to expand the previous compilations by Couffon (1908) and Ossó & Gagnaison (2019), elevating to nineteen the species reported, representatives of seventeen genera and fourteen families. Squat lobsters and parthenopid crabs are reported for the first time in the Atlantic Miocene of France. The expected presence of Xantho moldavicus (Yanakevich, 1977) and Lobocarcinus sismondai (von Meyer, 1843), hitherto known only by chelae, is confirmed herein. The status of Haydnella pulchellus (A. Milne-Edwards, 1864) is discussed. Moreover, the ventral features of Necronectes michelini (A. Milne-Edwards, 1861) are described for the first time. This decapod assemblage presents clear affinity with coeval decapod faunas from the Mediterranean and Paratethys realm, as evidenced by the presence of identical species such as Liocarcinus kuehni (Bachmayer, 1953) or Pilumnus mediterraneus (Lőrenthey, 1897), which is by far, the most common decapod in the ‘Faluns’ outcrops. Several different chelae and carapace remains are left in open nomenclature.
DOI: 10.15468/dfzgaa
title: The value of regular monitoring and diverse sampling techniques to assess aquatic non-native species: a case study from Orkney

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kakkonen, Jenni E., Worsfold, Tim M., Ashelby, Christopher W., Taylor, Andrea, Beaton, Katy (2019): The value of regular monitoring and diverse sampling techniques to assess aquatic non-native species: a case study from Orkney. Management of Biological Invasions 10 (1): 46-79, DOI: 10.3391/mbi.2019.10.1.04, URL: http://dx.doi.org/10.3391/mbi.2019.10.1.04