cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1196501221
title: Unveiling the role of chitin arrangement and inorganic additives in scorpion’s stinger

description: For predating and defence, scorpions largely rely on their sharp stingers to inject venom, subjecting these stingers to extreme mechanical loads. In contrast to other arthropods, e.g. crustaceans, who employ mineral for cuticle hardening, spiders and scorpions (class Arachnida) fabricate hard and sharp parts entirely without mineral. Alternatively, they often use locally elevated levels of metal ions such as Zn and Mn, as they are also found in scorpion stingers. A recent experiment at BM05, however, showed strong variations of metal ion type and distribution, both between species and in different locations of the stinger, suggesting substantial variation of strategies or even metal ion functionalites different from just mechanics. By high resolution XRD and XRF mapping, we wish to get insight into the structure, composition and functionality of scorpion stingers, a fascinating, but not fully explored type of biological tissue.
DOI: 10.5281/zenodo.7646785
title: High-resolution (5 m) surface water persistence map for 2021 in East-Africa

description: Raster surface water image highlighting the percentage of time in 2021 that there was water at a certain pixel in East Africa. Script which classifies individual countries: https://code.earthengine.google.com/3f508773522979dfa62a75bda7750b5f?noload=true Script which combines the individual maps and filters the end-result: https://code.earthengine.google.com/ed8ee1bbade0b51f3759565b30da37ab?noload=true
DOI: 10.5281/zenodo.7646784
title: High-resolution (5 m) surface water persistence map for 2021 in East-Africa

description: Raster surface water image highlighting the percentage of time in 2021 that there was water at a certain pixel in East Africa. Script which classifies individual countries: https://code.earthengine.google.com/3f508773522979dfa62a75bda7750b5f?noload=true Script which combines the individual maps and filters the end-result: https://code.earthengine.google.com/ed8ee1bbade0b51f3759565b30da37ab?noload=true
DOI: 10.5519/qd.dbyn4kjt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (597 records)
DOI: 10.6084/m9.figshare.23565939
title: CombinedDataRepositoryFile.xlsx

description: Data from 2015 and 2016 London Marathon.
DOI: 10.6084/m9.figshare.23565939.v2
title: CombinedDataRepositoryFile.xlsx

description: Data from 2015 and 2016 London Marathon.
DOI: 10.6084/m9.figshare.23565939.v1
title: CombinedDataRepositoryFile.xlsx

description: Data from 2015 and 2016 London Marathon.
DOI: 10.4121/1e28497e-00d5-4be2-8533-0a143922421c
title: Data underlying the publication: Mining Software Testing Knowledge from Stack Overflow

description: This paper aims to uncover and gather testing-related information from Stack Overflow, highlighting it as a valuable resource for practitioners seeking answers and guidance. The objective of the study is to accumulate knowledge from real-life experiences shared on Stack Overflow and bridge the knowledge gap between industry practices and teaching practices. The paper explores different types of software testing, popular frameworks, temporal trends of those frameworks, controversial opinions, and recommended practices/tips/advice/suggestions from Stack Overflow posts. The methodology involves determining search terms through literature, querying the Stack Exchange API, conducting frequency analysis of words from posts, and manually inspecting threads. Our results show that Selenium, Spring, JMeter, and React are the most popular frameworks discussed. Automated testing and JavaScript frameworks have shown an upward trajectory over the years. The recommendations made by practitioners were categorized based on the broad scope of topics covered. We draw comparisons and parallels with related previous research and discuss the technical limitations faced during the study. Overall, this paper uncovers valuable insights from Stack Overflow and provides practitioners with current knowledge of industry practices.
DOI: 10.4121/1e28497e-00d5-4be2-8533-0a143922421c.v1
title: Data underlying the publication: Mining Software Testing Knowledge from Stack Overflow

description: This paper aims to uncover and gather testing-related information from Stack Overflow, highlighting it as a valuable resource for practitioners seeking answers and guidance. The objective of the study is to accumulate knowledge from real-life experiences shared on Stack Overflow and bridge the knowledge gap between industry practices and teaching practices. The paper explores different types of software testing, popular frameworks, temporal trends of those frameworks, controversial opinions, and recommended practices/tips/advice/suggestions from Stack Overflow posts. The methodology involves determining search terms through literature, querying the Stack Exchange API, conducting frequency analysis of words from posts, and manually inspecting threads. Our results show that Selenium, Spring, JMeter, and React are the most popular frameworks discussed. Automated testing and JavaScript frameworks have shown an upward trajectory over the years. The recommendations made by practitioners were categorized based on the broad scope of topics covered. We draw comparisons and parallels with related previous research and discuss the technical limitations faced during the study. Overall, this paper uncovers valuable insights from Stack Overflow and provides practitioners with current knowledge of industry practices.
DOI: 10.5281/zenodo.7804143
title: Data sets and machine learning models for: Predicting critical properties of fluids using machine learning

description: The experimental data sets, data splits, additional features, QM calculations, model predictions, and final machine learning models for the manuscript "Predicting critical properties of fluids using multi-task machine learning". Citation should refer directly to the manuscript. (citation will be added soon) To use the machine learning models, please refer to the sample files and instructions on https://github.com/yunsiechung/chemprop/tree/crit_prop. Detailed information can be found in README.md file. <strong>Details on the properties considered</strong> The data set includes the following 8 properties: Tc: critical temperature, in K Pc: critical pressure, in bar rhoc: critical density, in mol/L omega: acentric factor, unitless Tb: boiling point, in K Tm: melting point, in K dHvap: enthalpy of vaporization at boiling point, in kJ/mol dHfus: enthalpy of fusion at melting point, in kJ/mol <strong>Details on the files</strong> 1. Data sets under CritProp_v1.0.0: all_data: includes the data sets used in this work. All data points are listed for each chemical compound as well as its corresponding data source. The details of the data sources can be found in the README.md file. The distribution of the data set is included in each folder. estimated_data_for_pretraining: contains the estimated data from Yaws' handbook that are used to pre-train our machine learning (ML) model. experimental_data: contains the experimental data used to fine-tune our ML model. additional_features: includes the additional features tested for the ML model. abraham: Abraham solute parameters (E, S, A, B, L). Molecular features. acsf: ACSF (atom-centered symmetry functions). Atomic features that are coverted from the 3D coordinates of the compound qm_atom: QM (quantum chemical) atomic feature. qm_mol: QM molecular feature. rdkit: Selected RDKit 2D molecular features. data_splits_and_model_predictions: contains the training set and test set used to for random and scaffold splits. It also contains the predicted values from our final ML model for each test set. 2. Machine learning (ML) model files: CritProp_ML_model_fiiles_with_abraham_feat.zip: contains the Chemprop ML model files that are trained using Abraham features as additional molecular features. This gives the best results. CritProp_ML_model_fiiles_without_additional_feat.zip: contains the Chemprop ML model files that are trained without any additional features. This gives the second best results. To use these ML models, please refer to the sample files and instructions on https://github.com/yunsiechung/chemprop/tree/crit_prop 3. QM (quantum chemical) calculations: QM_calculations.zip: contains the results of the QM calculations that are performed to compute QM features.
DOI: 10.4121/d1f3ca5c-f1e4-48f5-9a04-0564572d2b9c
title: Ot & Sien, a dataset to help the development of object detection in children's book illustrations

description: The original dataset is Ot & Sien Dataset (https://lab.kb.nl/dataset/ot-sien-dataset). We corrected mistakes and made it ML-ready.The purpose of this dataset is to help the development of automatic visual object detection in children's book illustrations. The properties of our dataset are summarized as: The dataset consists of illustrations rather than standard photos. 1452 images with 8241 objects (5.7 per image) are annotated including the category and bounding boxes.All images are resized to 416 x 416 with black fitting edges to adapt to the training procedure.The dataset follows a natural long-tail property, with some object categories being rare.The dataset has imbalanced categories.
DOI: 10.4121/d1f3ca5c-f1e4-48f5-9a04-0564572d2b9c.v1
title: Ot & Sien, a dataset to help the development of object detection in children's book illustrations

description: The original dataset is Ot & Sien Dataset (https://lab.kb.nl/dataset/ot-sien-dataset). We corrected mistakes and made it ML-ready.The purpose of this dataset is to help the development of automatic visual object detection in children's book illustrations. The properties of our dataset are summarized as: The dataset consists of illustrations rather than standard photos. 1452 images with 8241 objects (5.7 per image) are annotated including the category and bounding boxes.All images are resized to 416 x 416 with black fitting edges to adapt to the training procedure.The dataset follows a natural long-tail property, with some object categories being rare.The dataset has imbalanced categories.
DOI: 10.5281/zenodo.8072940
title: Anthropogenic Warming Induced Intensification of Summer Monsoon Frontal Precipitation over East Asia

description: Codes for detecting East Asian summer monsoon front and frontal precipitation, as well as generating figures
DOI: 10.5281/zenodo.8072939
title: Anthropogenic Warming Induced Intensification of Summer Monsoon Frontal Precipitation over East Asia

description: Codes for detecting East Asian summer monsoon front and frontal precipitation, as well as generating figures
DOI: 10.5519/qd.0ibxez6w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.6084/m9.figshare.23560401
title: Supporting data associated with the manuscript: "Domain collapse and active site ablation generate a widespread animal mitochondrial seryl-tRNA synthetase"

description: Contents: <strong>Clustal_X species and raw alignment: </strong> clustal_x_aln_species.fa clustal_aligment_supplementary.docx <br> <br> <strong>Data for phylogenetic pipeline:</strong> <em><strong>Species included in the eukaryotic database with download link </strong></em> eukaryotic_database__data.xlsx <em><strong>Query for blastsearch</strong></em> HOMSAP007601_serrs.fa <em><strong>Raw blastoutput</strong></em> SRS2_SLIMP_blastoutput.txt <em><strong>Fasta sequences of all sequences used in the phylogenetic analyses</strong></em> SRS2_SLIMP_species.fa <em><strong>Raw alignment of blasthits</strong></em> SRS2_SLIMP.aln <em><strong>Trimmed alignment</strong></em> SRS2_SLIMP_trim10.aln <em><strong>Raw tree files </strong></em> SRS2_SLIMP_trim10.aln.ckp.gz SRS2_SLIMP_trim10.aln.contree SRS2_SLIMP_trim10.aln.iqtree SRS2_SLIMP_trim10.aln.log SRS2_SLIMP_trim10.aln.mldist SRS2_SLIMP_trim10.aln.model.gz SRS2_SLIMP_trim10.aln.nex SRS2_SLIMP_trim10.aln.treefile SRS2_SLIMP_trim10.aln.uniqueseq.phy SRS2_SLIMP_trim10.newick.txt <br>
DOI: 10.6084/m9.figshare.23560401.v2
title: Supporting data associated with the manuscript: "Domain collapse and active site ablation generate a widespread animal mitochondrial seryl-tRNA synthetase"

description: Contents: <strong>Clustal_X species and raw alignment: </strong> clustal_x_aln_species.fa clustal_aligment_supplementary.docx <br> <br> <strong>Data for phylogenetic pipeline:</strong> <em><strong>Species included in the eukaryotic database with download link </strong></em> eukaryotic_database__data.xlsx <em><strong>Query for blastsearch</strong></em> HOMSAP007601_serrs.fa <em><strong>Raw blastoutput</strong></em> SRS2_SLIMP_blastoutput.txt <em><strong>Fasta sequences of all sequences used in the phylogenetic analyses</strong></em> SRS2_SLIMP_species.fa <em><strong>Raw alignment of blasthits</strong></em> SRS2_SLIMP.aln <em><strong>Trimmed alignment</strong></em> SRS2_SLIMP_trim10.aln <em><strong>Raw tree files </strong></em> SRS2_SLIMP_trim10.aln.ckp.gz SRS2_SLIMP_trim10.aln.contree SRS2_SLIMP_trim10.aln.iqtree SRS2_SLIMP_trim10.aln.log SRS2_SLIMP_trim10.aln.mldist SRS2_SLIMP_trim10.aln.model.gz SRS2_SLIMP_trim10.aln.nex SRS2_SLIMP_trim10.aln.treefile SRS2_SLIMP_trim10.aln.uniqueseq.phy SRS2_SLIMP_trim10.newick.txt <br>
DOI: 10.6084/m9.figshare.23560401.v1
title: Supporting data associated with the manuscript: "A widespread metazoan heterodimeric mitochondrial seryl-tRNA synthetase evolved through asymmetric domain loss."

description: Contents: <strong>Clustal_X species and raw alignment: </strong> clustal_x_aln_species.fa clustal_aligment_supplementary.docx <br> <br> <strong>Data for phylogenetic pipeline:</strong> <em><strong>Species included in the eukaryotic database with download link </strong></em> eukaryotic_database__data.xlsx <em><strong>Query for blastsearch</strong></em> HOMSAP007601_serrs.fa <em><strong>Raw blastoutput</strong></em> SRS2_SLIMP_blastoutput.txt <em><strong>Fasta sequences of all sequences used in the phylogenetic analyses</strong></em> SRS2_SLIMP_species.fa <em><strong>Raw alignment of blasthits</strong></em> SRS2_SLIMP.aln <em><strong>Trimmed alignment</strong></em> SRS2_SLIMP_trim10.aln <em><strong>Raw tree files </strong></em> SRS2_SLIMP_trim10.aln.ckp.gz SRS2_SLIMP_trim10.aln.contree SRS2_SLIMP_trim10.aln.iqtree SRS2_SLIMP_trim10.aln.log SRS2_SLIMP_trim10.aln.mldist SRS2_SLIMP_trim10.aln.model.gz SRS2_SLIMP_trim10.aln.nex SRS2_SLIMP_trim10.aln.treefile SRS2_SLIMP_trim10.aln.uniqueseq.phy SRS2_SLIMP_trim10.newick.txt <br>
DOI: 10.6084/m9.figshare.23565960
title: Biochemical compositions of ovary, hepatopancreas and muscle at different ovarian development stages of female swimming crab, <em>Portunus trituberculatus</em>

description: In this study, we compared the nutrient dynamic among the tissues during the ovary maturation process, and also analyzed the growth traits and histological characteristics of the ovary at different ovarian maturation stages of <em>P. trituberculatus</em>.
DOI: 10.6084/m9.figshare.23565057
title: Source_data

description: All data required to reproduce the results are available in the file
DOI: 10.6084/m9.figshare.23565057.v1
title: Source_data

description: All data required to reproduce the results are available in the file
DOI: 10.6084/m9.figshare.23560404
title: Supporting data associated with the manuscript: "Domain collapse and active site ablation generate a widespread animal mitochondrial seryl-tRNA synthetase"

description: Contents: <br> <strong>Clustal_X species and raw alignment: </strong><br> clustal_x_aln_species.fa<br> clustal_aligment_supplementary.docx<br> <br> <strong>Data for phylogenetic pipeline:</strong><br> <em><strong>Species included in the eukaryotic database with download link </strong></em><br> eukaryotic_database__data.xlsx<br> <em><strong>Query for blastsearch</strong></em><br> HOMSAP007601_serrs.fa<br> <em><strong>Raw blastoutput</strong></em><br> SRS2_SLIMP_blastoutput.txt<br> <em><strong>Fasta sequences of all sequences used in the phylogenetic analyses</strong></em><br> SRS2_SLIMP_species.fa<br> <em><strong>Raw alignment of blasthits</strong></em><br> SRS2_SLIMP.aln<br> <em><strong>Trimmed alignment</strong></em><br> SRS2_SLIMP_trim10.aln<br> <em><strong>Raw tree files </strong></em><br> SRS2_SLIMP_trim10.aln.ckp.gz<br> SRS2_SLIMP_trim10.aln.contree<br> SRS2_SLIMP_trim10.aln.iqtree<br> SRS2_SLIMP_trim10.aln.log<br> SRS2_SLIMP_trim10.aln.mldist<br> SRS2_SLIMP_trim10.aln.model.gz<br> SRS2_SLIMP_trim10.aln.nex<br> SRS2_SLIMP_trim10.aln.treefile<br> SRS2_SLIMP_trim10.aln.uniqueseq.phy<br> SRS2_SLIMP_trim10.newick.txt<br> <br>
DOI: 10.6084/m9.figshare.23560404.v1
title: Supporting data associated with the manuscript: "Domain collapse and active site ablation generate a widespread animal mitochondrial seryl-tRNA synthetase"

description: Contents: <br> <strong>Clustal_X species and raw alignment: </strong><br> clustal_x_aln_species.fa<br> clustal_aligment_supplementary.docx<br> <br> <strong>Data for phylogenetic pipeline:</strong><br> <em><strong>Species included in the eukaryotic database with download link </strong></em><br> eukaryotic_database__data.xlsx<br> <em><strong>Query for blastsearch</strong></em><br> HOMSAP007601_serrs.fa<br> <em><strong>Raw blastoutput</strong></em><br> SRS2_SLIMP_blastoutput.txt<br> <em><strong>Fasta sequences of all sequences used in the phylogenetic analyses</strong></em><br> SRS2_SLIMP_species.fa<br> <em><strong>Raw alignment of blasthits</strong></em><br> SRS2_SLIMP.aln<br> <em><strong>Trimmed alignment</strong></em><br> SRS2_SLIMP_trim10.aln<br> <em><strong>Raw tree files </strong></em><br> SRS2_SLIMP_trim10.aln.ckp.gz<br> SRS2_SLIMP_trim10.aln.contree<br> SRS2_SLIMP_trim10.aln.iqtree<br> SRS2_SLIMP_trim10.aln.log<br> SRS2_SLIMP_trim10.aln.mldist<br> SRS2_SLIMP_trim10.aln.model.gz<br> SRS2_SLIMP_trim10.aln.nex<br> SRS2_SLIMP_trim10.aln.treefile<br> SRS2_SLIMP_trim10.aln.uniqueseq.phy<br> SRS2_SLIMP_trim10.newick.txt<br> <br>
DOI: 10.5281/zenodo.8073034
title: Data for Millennial-scale precipitation and chemical weathering variations since the last deglaciation recorded by the northwestern South China Sea sediments

description: Magnetic, DRS and Geochemical data sets of core SCS-02
DOI: 10.5281/zenodo.8073033
title: Data for Millennial-scale precipitation and chemical weathering variations since the last deglaciation recorded by the northwestern South China Sea sediments

description: Magnetic, DRS and Geochemical data sets of core SCS-02
DOI: 10.4121/4b4b1f8a-b32e-4d6f-974f-991c289925b6
title: Data for Droplet-based Assembly of Magnetic Superballs

description: This dataset contains all raw 2D small-angle x-ray scattering (SAXS) images for <em>in-situ </em>hematite-silica core-shell superball crystallization. Colloidal crystallization was obtained under a drying droplet for all experiments. The corresponding 2D SAXS calibration file is also included. The form factor measurements of dilute particle suspensions is included.
DOI: 10.4121/4b4b1f8a-b32e-4d6f-974f-991c289925b6.v1
title: Data for Droplet-based Assembly of Magnetic Superballs

description: This dataset contains all raw 2D small-angle x-ray scattering (SAXS) images for <em>in-situ </em>hematite-silica core-shell superball crystallization. Colloidal crystallization was obtained under a drying droplet for all experiments. The corresponding 2D SAXS calibration file is also included. The form factor measurements of dilute particle suspensions is included.
DOI: 10.25442/hku.23543343
title: <strong>Supporting data for</strong> "Development of RNA Proximity Labeling Approaches Mediated by Fluorogenic Photosensitizers"

description: This dataset contains four subfiles, including 1) Organic synthesis of fluorogenic photosensitizers. Detailed synthetic routes of a series of malachite green derivatives and Hoechst-conjugated dibromofluorescien are recorded with the purification processes. 2) In vitro photophysical characterization of the synthetic compounds and the complex forming by binding to protein and DNA, including the UV-Vis absorption spectra, fluorescence spectra, and ROS detecting assays; 3) bacteria-related experiments which detailly record plasmid construction, amplification, protein expression, and purification; 4) mammalian cell-related experiments, including the microscope imaging of the synthetic compounds in live cells and visualization of the in situ labeling, analysis of protein and RNA isolated from labeled cells via western blot, in-gel fluorescence, dot blot, etc..
DOI: 10.25442/hku.23543343.v1
title: <strong>Supporting data for</strong> "Development of RNA Proximity Labeling Approaches Mediated by Fluorogenic Photosensitizers"

description: This dataset contains four subfiles, including 1) Organic synthesis of fluorogenic photosensitizers. Detailed synthetic routes of a series of malachite green derivatives and Hoechst-conjugated dibromofluorescien are recorded with the purification processes. 2) In vitro photophysical characterization of the synthetic compounds and the complex forming by binding to protein and DNA, including the UV-Vis absorption spectra, fluorescence spectra, and ROS detecting assays; 3) bacteria-related experiments which detailly record plasmid construction, amplification, protein expression, and purification; 4) mammalian cell-related experiments, including the microscope imaging of the synthetic compounds in live cells and visualization of the in situ labeling, analysis of protein and RNA isolated from labeled cells via western blot, in-gel fluorescence, dot blot, etc..
DOI: 10.34740/kaggle/dsv/5232637
title: Google Trends
DOI: 10.6084/m9.figshare.22696420
title: Suppression of Exciton Annihilation in Molecular Aggregates by Quantum Interference

description: source data for figures
DOI: 10.6084/m9.figshare.22696420.v1
title: Suppression of Exciton Annihilation in Molecular Aggregates by Quantum Interference

description: source data for figures
DOI: 10.6084/m9.figshare.22177910
title: Record of pre-industrial atmospheric sulfate in continental interiors

description: Sulfur and triple oxygen isotope composition of sulfate leached out of carbonate outcrops from northern China and the southwestern US.
DOI: 10.6084/m9.figshare.22734761.v1
title: Amorphous nickel hydroxide shell tailors local chemical environment on platinum surface for alkaline hydrogen evolution reaction

description: Source data for plots in main figures
DOI: 10.6084/m9.figshare.22734761
title: Amorphous nickel hydroxide shell tailors local chemical environment on platinum surface for alkaline hydrogen evolution reaction

description: Source data for plots in main figures
DOI: 10.6084/m9.figshare.22736801.v1
title: Scalar topological photonic nested meta-crystals and skyrmion surface states in the light cone continuum

description: Simulation and experiment data for "Scalar topological photonic nested meta-crystals and skyrmion surface states in the light cone continuum".
DOI: 10.6084/m9.figshare.22736801
title: Scalar topological photonic nested meta-crystals and skyrmion surface states in the light cone continuum

description: Simulation and experiment data for "Scalar topological photonic nested meta-crystals and skyrmion surface states in the light cone continuum".
DOI: 10.6084/m9.figshare.22637743.v1
title: Hong-Ou-Mandel Interference in Colloidal CsPbBr3 Perovskite Nanocrystals

description: Datasets for all the figures in this work, adequately labeled. Each .xlsx file a tab that corresponds to each sub figure dataset, which is also appropriately labeled.
DOI: 10.6084/m9.figshare.22637743
title: Hong-Ou-Mandel Interference in Colloidal CsPbBr3 Perovskite Nanocrystals

description: Datasets for all the figures in this work, adequately labeled. Each .xlsx file a tab that corresponds to each sub figure dataset, which is also appropriately labeled.
DOI: 10.6084/m9.figshare.21483405.v1
title: The Dynamics of Agonist-β2-Adrenergic Receptor Activation Induced by Binding of GDP Bound Gs Protein

description: Additional Data including Structure and free energy results
DOI: 10.6084/m9.figshare.21483405
title: The Dynamics of Agonist-β2-Adrenergic Receptor Activation Induced by Binding of GDP Bound Gs Protein

description: Additional Data including Structure and free energy results