cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15129/176712e5-7677-461e-9d78-bb9af35cff76
title: Data for: "Attosecond-Angstrom free-electron-laser towards the cold beam limit"

description: This data set contains the raw data from the theoretical and numerical study of ultra-compact free-electron laser based on Plasma Wakefield acceleration. A README file is provided for a detailed description of the data set.
DOI: 10.6084/m9.figshare.16574255.v1
title: A trait database for European subterranean spiders

description: Database of traits for European cave spiders, available as an Excel file (.xlsx) or a tab-delimited file (.csv). See Metadata file for an explanation of the columns. <br> The database is described in detail in the following publication: <br> Mammola S, Pavlek P, Huber BA, Isaia M, Ballarin F, Tolve M, Čupić I, Hesselberg T, Lunghi E, Mouron S, Graco Roza C, & Cardoso P. 2022. A trait database and updated checklist for European subterranean spiders. Scientific Data, doi: 10.1038/s41597-022-01316-3
DOI: 10.5281/zenodo.7390279
title: ZooMS spectra Salzgitter-Lebenstedt

description: This ZooMS dataset is a supplement to the paper: Ruebens, K., Smith, G.M., Fewlass, H., Sinet-Mathiot, V., Hublin, J-J., Welker, F. Neanderthal subsistence, taphonomy and chronology at Salzgitter-Lebenstedt (Germany): a multifaceted analysis of morphologically unidentifiable bone. Journal of Quaternary Science. https://doi.org/10.1002/jqs.3499 This dataset contains txt files of MALDI spectra (merged triplicates) from both AmBic and Acid extractions of bone fragments from the Middle Palaeolithic site of Salzgitter-Lebenstedt (Germany), and an excel database listing the identified peptide markers and ZooMS identifications. If Acid extractions did not result in identifiable spectra, an AmBic equivalent was not always created, hence there are more Acid than AmBic spectra in this dataset. For any questions please contact Karen Ruebens. <br> <br> Please use the DOI when citing this dataset.
DOI: 10.5281/zenodo.7390278
title: ZooMS spectra Salzgitter-Lebenstedt

description: This ZooMS dataset is a supplement to the paper: Ruebens, K., Smith, G.M., Fewlass, H., Sinet-Mathiot, V., Hublin, J-J., Welker, F. Neanderthal subsistence, taphonomy and chronology at Salzgitter-Lebenstedt (Germany): a multifaceted analysis of morphologically unidentifiable bone. Journal of Quaternary Science. https://doi.org/10.1002/jqs.3499 This dataset contains txt files of MALDI spectra (merged triplicates) from both AmBic and Acid extractions of bone fragments from the Middle Palaeolithic site of Salzgitter-Lebenstedt (Germany), and an excel database listing the identified peptide markers and ZooMS identifications. If Acid extractions did not result in identifiable spectra, an AmBic equivalent was not always created, hence there are more Acid than AmBic spectra in this dataset. For any questions please contact Karen Ruebens. <br> <br> Please use the DOI when citing this dataset.
DOI: 10.5281/zenodo.7573494
title: Current pubertal development in Chinese children and the impact of overnutrition, lifestyle and perinatal factors

description: <strong>Context: </strong>Pubertal onset has been decreasing in many countries but there has been no data on pubertal development in Chinese children over the last decade. <strong>Objective: </strong>The primary objective of the study was to evaluate the current status of sexual maturation in Chinese children and adolescents. Secondary objectives were to examine socio-economic, lifestyle and auxological associations with pubertal onset. <strong>Design: </strong>A national, cross-sectional health survey. <strong>Setting: </strong>The community-based setting. <strong>Participants: </strong>A multistage, stratified cluster random sampling method was used to select a nationally representative sample, consisting of 231,575 children and adolescents(123,232 boys and 108,343 girls) between 2017 and 2019. <strong>Main Outcome Measure: </strong>Growth parameters and pubertal staging were assessed by physical examination. <strong>Results: </strong>Compared to 10 years previously the median age of Tanner 2 breast development and menarche were similar at 9.65 years and 12.39 years respectively. However, male puberty occurred earlier with a median age of testicular volume ≥4 ml of 10.65 years. Pubertal onset did occur earlier at the extremes with 3.3% of the girls with breast development between 6.5-6.99 years old increasing to 5.8% by 7.5-7.99 years old. Early pubertal onset was also noted in boys, with a testicular volume ≥ 4 ml noted in 1.5% between 7.5-7.99 years increasing to 3.5% between 8.5-8.99 years old. Obesity and overweight increased the risk of developing earlier puberty compared to the normal weight in both boys and girls. <strong>Conclusions: </strong>Over the past decade, pubertal development is occurring earlier in Chinese children. While the cause is multifactorial, overweight and obesity are associated with earlier puberty onset. The currently-used normative pubertal data of precocious puberty may not be applicable to diagnose precocious puberty.
DOI: 10.25405/data.ncl.21931509
title: An On-the-Fly Deep Neural Network for Simulating Time-Resolved Spectroscopy: Predicting the Ultrafast Ring Opening Dynamics of 1,2-Dithiane

description: Revolutionary developments in ultrafast light source technology are enabling experimental spectro-scopists to probe the structural dynamics of molecules and materials on the femtosecond timescale.<br> The capacity to investigate ultrafast processes afforded by these resources accordingly inspires the-oreticians to carry out high-level simulations which facilitate the interpretation of the underlying dynamics from ultrafast experiments. In this Article, we implement a Deep Neural Network (DNN) to convert excited-state molecular dynamics simulations into time-resolved spectroscopic signals. Our DNN is trained on-the-fly from first-principles theoretical data obtained from a set of time-evolving molecular dynamics. The train-test process iterates for each time-step of the dynamics data until the network can predict spectra with sufficient accuracy to replace the computationally intensive quan-tum chemistry calculations required to produce them, at which point it simulates the time-resolved spectra for longer timescales. The potential of this approach is demonstrated by probing dynamics of the the ring opening of 1,2-dithiane using sulphur K-edge X-ray absorption spectroscopy. The benefits of this strategy will be more markedly apparent for simulations of larger systems which will exhibit a more notable computational burden, making this approach applicable to the study of a diverse range of complex chemical dynamics.
DOI: 10.25405/data.ncl.21931509.v1
title: An On-the-Fly Deep Neural Network for Simulating Time-Resolved Spectroscopy: Predicting the Ultrafast Ring Opening Dynamics of 1,2-Dithiane

description: Revolutionary developments in ultrafast light source technology are enabling experimental spectro-scopists to probe the structural dynamics of molecules and materials on the femtosecond timescale.<br> The capacity to investigate ultrafast processes afforded by these resources accordingly inspires the-oreticians to carry out high-level simulations which facilitate the interpretation of the underlying dynamics from ultrafast experiments. In this Article, we implement a Deep Neural Network (DNN) to convert excited-state molecular dynamics simulations into time-resolved spectroscopic signals. Our DNN is trained on-the-fly from first-principles theoretical data obtained from a set of time-evolving molecular dynamics. The train-test process iterates for each time-step of the dynamics data until the network can predict spectra with sufficient accuracy to replace the computationally intensive quan-tum chemistry calculations required to produce them, at which point it simulates the time-resolved spectra for longer timescales. The potential of this approach is demonstrated by probing dynamics of the the ring opening of 1,2-dithiane using sulphur K-edge X-ray absorption spectroscopy. The benefits of this strategy will be more markedly apparent for simulations of larger systems which will exhibit a more notable computational burden, making this approach applicable to the study of a diverse range of complex chemical dynamics.
DOI: 10.5281/zenodo.7567333
title: QualBook

description: QualBook is a dataset of quality featurs extracted from Kaggle's jupyter notebooks
DOI: 10.5281/zenodo.7567332
title: QualBook

description: QualBook is a dataset of quality featurs extracted from Kaggle's jupyter notebooks
DOI: 10.23729/9e4a18c7-06ad-42e3-b61d-54e4627c4b55
title: Heliconius erato NMR data

description: README Heliconius erato NMR data The folders contain the raw data output of Nuclear Magnetic Resonance (1H-NMR; using Bruker Avance III HD NMR spectrometer; Bruker BioSpin, Germany) analyses of Heliconius erato butterfly samples. These data have been further analyzed and the results published in the following publications: Mattila ALK, Jiggins CD, Opedal ØH, Montejo-Kovacevich G, Pinheiro de castro ÉC, McMillan WO, Bacquet C, Saastamoinen M. 2021. Evolutionary and ecological processes influencing chemical defense variation in an aposematic and mimetic Heliconius butterfly. PeerJ 9:e11523 https://doi.org/10.7717/peerj.11523 Mattila ALK, Jiggins CD, Saastamoinen M. 2022. Condition dependence in biosynthesized chemical defenses of an aposematic and mimetic Heliconius butterfly. Ecology and Evolution 12 (6), e9041 https://doi.org/10.1002/ece3.9041 In the above publications, the concentrations of the two cyanogenic compounds biosynthesized by Heliconius larvae and adults, linamarin and lotaustralin, were analyzed from the butterfly samples using 1H-NMR data. The peaks of these cyanogen compounds were identified based on comparison of sample 1H spectra with the 1H spectra of authentic reference samples of linamarin and lotaustralin, also included here. The data were processed and analyzed using Bruker TopSpin software (versions 3.2.6; 2014 and 3.5.6; 2016). The key to id´s (NMR_id to Sample_id/Pedigree_data_id), including sample dry mass data and information about sample type can be found in attached file "Heliconius erato NMR data_key to ids.csv". The data folders are named by the NMR_id. The raw data types can be processed and analyzed using Bruker TopSpin software.
DOI: 10.23729/0b726232-79b5-4b21-8ff5-bc0748623964
title: Passiflora biflora LCMS raw data

description: README Passiflora biflora LCMS raw data.zip Compressed raw mass spectral (LC-MS) data from Passiflora biflora samples. The cyanogenic content of Passiflora biflora leaf samples was analyzed using liquid chromatography-mass spectrometry (LC-MS/MS) with Agilent 1100 Series LC (Agilent Technologies, Germany) hyphenated to a Bruker HCT-Ultra ion trap mass spectrometer (Bruker Daltonics, Germany) following the procedure of de castro et al. 2019. https://doi.org/10.1002/ece3.5062 and Mattila et al. 2021. https://doi.org/10.7717/peerj.11523 Mass spectral data can be analyzed with the native data analysis software (Compass DataAnalyses, Bruker Daltonics). Included are also files giving key to ids (linking raw LCMS id to sample id) and providing sample wet and dry mass. Also included METADATA describing these files. Passiflora_biflora_laboratory_samples_LCMS_Key to ids METADATA_Passiflora_biflora_laboratory_samples_LCMS_Key to ids Passiflora biflora field samples Panama_LCMS_Key to ids METADATA_Passiflora biflora field samples Panama_LCMS_Key to ids The data has been further analyzed and results published in: Mattila ALK, Jiggins CD, Opedal ØH, Montejo-Kovacevich G, Pinheiro de castro ÉC, McMillan WO, Bacquet C, Saastamoinen M. 2021. Evolutionary and ecological processes influencing chemical defense variation in an aposematic and mimetic Heliconius butterfly. PeerJ 9:e11523 https://doi.org/10.7717/peerj.11523
DOI: 10.25919/hnse-2w83
title: Parkes observations for project P456 semester 2022OCTS_07

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. We are now in an exciting regime where a signal detected in our (and other data sets) has the form expected for a gravitational wave background. We are therefore now attempting to confirm, or deny, this exciting result. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.6084/m9.figshare.12852867
title: Interactive tool for farmers to diversify high-latitude cereal-dominated crop rotations

description: Agricultural landscapes have become more intensive and monotonous, which may further increase biodiversity loss. Even though Finnish rural landscapes are often heterogeneous, crop choices and rotations lack diversity. The aim of this study was to develop an interactive, multi-step crop rotation tool, which acknowledges farmer’s preferences in land allocation for different crops depending on farm and field parcel characteristics. The tool was developed to provide as diverse a 5-year crop rotation plan as possible on the field parcel scale for the farmer’s consideration. The tool is flexible and interactive in the sense that it allows a farmer to include or exclude crops and spatially and temporally rearrange them to improve farming logistics. The tool was tested in southern-western Finland with the highest potential for diverse crop choices and sequencing. Test-runs indicated that the tool was powerful in proposing diversified crop rotations: the shares of current monotonous cereal-based rotations collapsed. The final diversification plan always lies in the farmer’s hands, who may exclude crop choices and even end up in cereal monoculture rotations. The tool provides estimates on farm economics for each step of the planning process. The tool will be available for all Finnish farmers (∼48,000) on the EconomyDoctor-portal with personal access only and the background information is automatically updated annually.
DOI: 10.6084/m9.figshare.12852867.v1
title: Interactive tool for farmers to diversify high-latitude cereal-dominated crop rotations

description: Agricultural landscapes have become more intensive and monotonous, which may further increase biodiversity loss. Even though Finnish rural landscapes are often heterogeneous, crop choices and rotations lack diversity. The aim of this study was to develop an interactive, multi-step crop rotation tool, which acknowledges farmer’s preferences in land allocation for different crops depending on farm and field parcel characteristics. The tool was developed to provide as diverse a 5-year crop rotation plan as possible on the field parcel scale for the farmer’s consideration. The tool is flexible and interactive in the sense that it allows a farmer to include or exclude crops and spatially and temporally rearrange them to improve farming logistics. The tool was tested in southern-western Finland with the highest potential for diverse crop choices and sequencing. Test-runs indicated that the tool was powerful in proposing diversified crop rotations: the shares of current monotonous cereal-based rotations collapsed. The final diversification plan always lies in the farmer’s hands, who may exclude crop choices and even end up in cereal monoculture rotations. The tool provides estimates on farm economics for each step of the planning process. The tool will be available for all Finnish farmers (∼48,000) on the EconomyDoctor-portal with personal access only and the background information is automatically updated annually.
DOI: 10.15468/38ws89
title: A checklist of Butterflies in Atewa Range Forest Reserve, Eastern Region, Ghana

description: The Atewa Range Reserve covers an area of 236.63 KM². The Atewa Range is internationally recognized as one of the highest priority rainforest ecosystems in West Africa for its high species diversity, high level of endemism and great hydrological importance (Larsen, 2006). Its butterfly diversity is outstanding with over 700 species projected to occur including the narrowly endemic Mylothris atewa Berger, 1980 and Abantis ja usheri Collins & Larsen, 2008 that also occurs only in a few upland forests in West Africa. This dataset is a checklist of butterfly species recorded in the Atewa forest of Ghana between 1950-2019. The dataset comprises 636 taxa compiled from dataset records from Torben Larsen’s book, the Butterflies of West Africa, RAP survey by Conservation International (2007), African Butterfly Research Institute, Nairobi, Kenya (ABRI), The Biodiversity of Atewa Report, Szabolcs Sáfián’s records as well as a review by Szabolcs Sáfián and Jeremy Lindsell in 2019. The dataset has also been aligned to taxonomic records of LepSoc Africa with a few variations. There were 87 records in the original dataset which are expected by Larsen but have not been confirmed and therefore have not been included in this publication.
DOI: 10.6084/m9.figshare.21828559
title: tableS10 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: Differentially abundant ASVs that are present in field and greenhouse derived samples.
DOI: 10.6084/m9.figshare.21828559.v2
title: tableS10 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: Differentially abundant ASVs that are present in field and greenhouse derived samples.
DOI: 10.6084/m9.figshare.21828559.v1
title: tableS10 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: Differentially abundant ASVs that are present in field and greenhouse derived samples.
DOI: 10.6084/m9.figshare.21828568
title: tableS2 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: R/qtl input file for QTL mapping of phenotypic traits of P.hallii RIL population grown under different microbial inoculation treatments.
DOI: 10.6084/m9.figshare.21828568.v2
title: tableS2 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: R/qtl input file for QTL mapping of phenotypic traits of P.hallii RIL population grown under different microbial inoculation treatments.
DOI: 10.6084/m9.figshare.21828568.v1
title: tableS2 from Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

description: R/qtl input file for QTL mapping of phenotypic traits of P.hallii RIL population grown under different microbial inoculation treatments.
DOI: 10.6084/m9.figshare.20209865
title: Pingel_et_al_U-Pb_AFT_ZHe_data.xlsx

description: This files contains 1) a summary sheet of AFT dates including sample locations and AFT length data; 2-3) the raw AFT and AFT-lenght data; 4) ZHe data; 5) Tt-Constraints used in thermal modelling and model results; 6) U-Pb zircon data; and 7) a regional compilation of deformation onset in NW Argentina.
DOI: 10.6084/m9.figshare.20209865.v1
title: Pingel_et_al_U-Pb_AFT_ZHe_data.xlsx

description: This files contains 1) a summary sheet of AFT dates including sample locations and AFT length data; 2-3) the raw AFT and AFT-lenght data; 4) ZHe data; 5) Tt-Constraints used in thermal modelling and model results; 6) U-Pb zircon data; and 7) a regional compilation of deformation onset in NW Argentina.
DOI: 10.6084/m9.figshare.21719957
title: Clicker Training Mice for Improved Compliance in the Catwalk Test

description: The data available here were published in the article "Clicker Training Mice for Improved Compliance in the Catwalk Test" in Animals (MDPI). All relevant information is available there.
DOI: 10.6084/m9.figshare.14141159
title: STR/Ort mouse epiphysis (male, 8w, #LT6) CT stack

description: CT stack of a male, 8-week-old STR/Ort mouse epiphysis.<br>Voxel size = 0.005 mm<br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office.
DOI: 10.6084/m9.figshare.14141159.v2
title: STR/Ort mouse epiphysis (male, 8w, #LT6) CT stack

description: CT stack of a male, 8-week-old STR/Ort mouse epiphysis.<br>Voxel size = 0.005 mm<br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office.
DOI: 10.6084/m9.figshare.14141159.v1
title: STR/Ort mouse epiphysis (male, 8w, #LT6) CT stack

description: CT stack of a male, 8-week-old STR/Ort mouse epiphysis.<br>Voxel size = 0.005 mm<br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office.
DOI: 10.6084/m9.figshare.14135879
title: Human parietal bone section (male, 5 months, craniosynostosis) CT Stack

description: Section of a human cranium of a 5-month-old male with cranial synostosis. <br>Voxel size: 0.009 mm <br>The samples were retrieved following ethical approval and patient consent.<br><br>
DOI: 10.6084/m9.figshare.14135879.v5
title: Human parietal bone section (male, 5 months, craniosynostosis) CT Stack

description: Section of a human cranium of a 5-month-old male with cranial synostosis. <br>Voxel size: 0.009 mm <br>The samples were retrieved following ethical approval and patient consent.<br><br>
DOI: 10.6084/m9.figshare.14097263
title: Human femur section (female, 77 years) CT stack

description: Section of a human femur from a 77-year-old female.Voxel size: 0.01 mm <br>The samples was retrieved following ethical approval and patient consent.
DOI: 10.6084/m9.figshare.14097263.v4
title: Human femur section (female, 77 years) CT stack

description: Section of a human femur from a 77-year-old female.Voxel size: 0.01 mm <br>The samples was retrieved following ethical approval and patient consent.
DOI: 10.6084/m9.figshare.14097380
title: CBA mouse epiphysis (male, 20wk, #4) CT stack

description: CT stack of a male, 20-week-old CBA mouse epiphysis .<br>Voxel size = 0.005 mm <br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office. <br>
DOI: 10.6084/m9.figshare.14097380.v3
title: CBA mouse epiphysis (male, 20wk, #4) CT stack

description: CT stack of a male, 20-week-old CBA mouse epiphysis .<br>Voxel size = 0.005 mm <br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office. <br>
DOI: 10.6084/m9.figshare.14097380.v4
title: CBA mouse epiphysis (male, 20wk, #4) CT stack

description: CT stack of a male, 20-week-old CBA mouse epiphysis .<br>Voxel size = 0.005 mm <br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office. <br>