cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1172223.10fu
title: SH1172223.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1172226.10fu
title: SH1172226.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1172228.10fu
title: SH1172228.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1172229.10fu
title: SH1172229.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1172233.10fu
title: SH1172233.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.13738981
title: Mitigating activity cliff-induced discrepancies by structure-free compound-protein interaction and integrated bioactivity learning

description: CPI2M data for "Complex structure-free compound-protein interaction prediction for mitigating activity cliff-induced discrepancies and integrated bioactivity learning".

ki.csv: Bioactivity data with pKi activity type.

kd.csv: Bioactivity data with pKd activity type.

ec50.csv: Bioactivity data with pEC50 activity type.

ic50.csv: Bioactivity data with pIC50 activity type.

Protein_pretrained_feat.zip: pre-calculated protein feature files with UniProt ID naming. Should be unzipped before start model training with CPI2M data.

 

For each .csv data, columns include "smiles" (ligand SMILES), "exp_mean" (nM bioactivity), "y" (neg.log nM, final label), "cliff_mol" (whether activity cliff or not), "split" (splitting label by activity cliff), "Uniprot_id" (UniProt ID for protein), "Sequence" (wildtype sequence for protein).

 

Please find the project code at https://github.com/gu-yaowen/GGAP-CPI
DOI: 10.15468/dl.by5gp2
title: Occurrence Download

description: A dataset containing 4888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is kentucky",
 "DatasetKey is BugGuide - Identification, Images, & Information For Insects, Spiders & Their Kin For the United States & Canada"
 ]
}

 The dataset includes 4888 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022487-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4drfv
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla bipinnatifida Douglas ex Hook.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166550-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaccwf
title: Occurrence Download

description: A dataset containing 7673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-139.48798 2.61522,-139.48798 39.38478,-47.51202 39.38478,-47.51202 2.61522,-139.48798 2.61522))",
 "HasCoordinate is true",
 "TaxonKey is Oryzomys couesi (Alston, 1877)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7673 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022488-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57pw68
title: Occurrence Download

description: A dataset containing 6622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epilobium alpestre (Jacq.) Krock."
 ]
}

 The dataset includes 6622 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166552-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yz2deg
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((107.2807 21.29424,108.70168 17.12397,111.3583 18.3905,121.95387 21.88117,122.66436 26.26767,122.07743 29.04785,107.2807 21.29424))",
 "TaxonKey is Lophius litulon (Jordan, 1902)",
 "Year 1990-2020"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048233-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vqizh
title: Occurrence Download

description: A dataset containing 1158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Stipa ichu (Ruiz & Pav.) Kunth",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1158 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022488-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5gnj6
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Graptemys pulchra Baur, 1893",
 "Year 2000-2021"
 ]
}

 The dataset includes 111 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010612-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buocgg
title: Occurrence Download

description: A dataset containing 10830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-152.25675 11.40812,-152.25675 49.59188,-56.74325 49.59188,-56.74325 11.40812,-152.25675 11.40812))",
 "HasCoordinate is true",
 "TaxonKey is Peromyscus difficilis (J.A.Allen, 1891)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10830 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022489-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzvt4v
title: Occurrence Download

description: A dataset containing 471543 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 471543 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206245-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbacrc
title: Occurrence Download

description: A dataset containing 3198 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-3.7326 43.61847,-4.04022 43.19,-3.93036 42.75055,-3.60077 42.28363,-3.21625 41.8277,-2.83722 41.61346,-2.58453 41.55853,-2.01324 41.65741,-1.66168 42.38251,-1.23322 42.92084,-1.23871 43.38776,-1.69464 43.55255,-2.16705 44.00848,-2.79877 44.02496,-3.23822 44.04144,-3.65021 43.86566,-3.7326 43.61847))",
 "Geometry POLYGON((-3.7326 43.61847,-4.04022 43.19,-3.93036 42.75055,-3.60077 42.28363,-3.21625 41.8277,-2.83722 41.61346,-2.58453 41.55853,-2.01324 41.65741,-1.66168 42.38251,-1.23322 42.92084,-1.23871 43.38776,-1.69464 43.55255,-2.16705 44.00848,-2.79877 44.02496,-3.23822 44.04144,-3.65021 43.86566,-3.7326 43.61847))"
 ]
 },
 "DatasetKey is Natusfera Citizen Science Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3198 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022489-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwdxng
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hemigrammus bleheri Géry & Mahnert, 1986)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048234-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k52qx
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ectropothecium ohosimense Cardot & Thér."
 ]
}

 The dataset includes 62 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152213-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yutnm6
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-135.07301 -51.04163,-14.92699 -51.04163,-14.92699 -2.95837,-135.07301 -2.95837,-135.07301 -51.04163))",
 "HasCoordinate is true",
 "TaxonKey is Leopardus guigna (Molina, 1782)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022489-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ww792c
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardaminopsis halleri subsp. ovirensis (Wulfen) Hegi & Em.Schmid"
 ]
}

 The dataset includes 30 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046033-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9gz4w
title: Occurrence Download

description: A dataset containing 8492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-120.22522 12.51472,-120.22522 29.48528,-77.77478 29.48528,-77.77478 12.51472,-120.22522 12.51472))",
 "HasCoordinate is true",
 "TaxonKey is Peromyscus levipes Merriam, 1898",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8492 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022490-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4fb8e
title: Occurrence Download

description: A dataset containing 38934 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Morchella Dill. ex Pers., Morchellana Gray, 1862, Morchella Dill. ex L., Morchellastrea Reig Oriol, 1990, Morchellastraea Alloiteau, 1941, Morchella purpurascens f. heteroparaphysa Jacquet., 1985, Morchella apicata Smotl., Morchella pulchella Clowez & Franç.Petit, Morchella herediana L.D.Gómez, Morchella meiliensis Y.C.Zhao, Shu H.Li, H.M.Chai & M.H.Zhong)"
 ]
}

 The dataset includes 38934 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048231-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bu3cs
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus pennsylvanica Ashe",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166496-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqw5dv
title: Occurrence Download

description: A dataset containing 511702 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Esociformes"
 ]
}

 The dataset includes 511702 records from 322 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022490-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzz47n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus indicens Ashe",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166473-200613084148143/datasets/export for details.
DOI: 10.15468/dl.6a34xz
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetophractus nationi (Thomas, 1894)"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022516-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfsj8e
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ectropothecium zollingeri (Müll.Hal.) A.Jaeger"
 ]
}

 The dataset includes 503 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152217-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.og2zsk
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Sweden",
 "Geometry POLYGON((17.31473 68.0548,16.38164 67.5507,16.10101 67.46481,16.26913 67.22649,16.39567 67.04712,15.37138 66.46573,15.45557 66.28579,14.51547 66.11593,14.5295 65.30214,13.64552 64.59517,14.10856 64.48056,13.95421 64.02955,13.08427 64.09093,12.59317 63.90022,12.14416 63.60236,12.21432 63.45851,12.00385 63.25717,12.24238 62.98439,17.57431 62.18986,20.82959 63.5524,21.75566 64.43821,21.18038 64.81101,21.65744 65.03699,23.32016 65.76758,17.31473 68.0548))",
 "HasCoordinate is true",
 "TaxonKey is Cyanobacteria",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 121 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022492-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nenbv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus limata Beadle",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166484-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuax8x
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((107.11512 21.4626,108.49971 17.62836,115.63567 18.85319,122.77162 22.63418,122.77162 29.55712,108.07369 22.42116,107.11512 21.4626))",
 "TaxonKey is Clarias fuscus (Lacepède, 1803)",
 "Year 1990-2020"
 ]
}

 The dataset includes 114 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048235-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mprxq
title: Occurrence Download

description: A dataset containing 13438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.52879798 37.84406662,0.69069499 37.84406662,0.69069499 40.78865433,-1.52879798 40.78865433,-1.52879798 37.84406662))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Material sample"
 ]
 },
 "TaxonKey is Chromista"
 ]
}

 The dataset includes 13438 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237052-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmjcjy
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "TaxonKey is Cyclodium heterodon (Schrad.) T.Moore",
 "TaxonKey is Cyclodium heterodon var. heterodon",
 "TaxonKey is Aspidium abbreviatum Schrad.",
 "TaxonKey is Aspidium heterodon Schrad.",
 "TaxonKey is Cyclodium heterodon var. abbreviatum (C.Presl) A.R.Sm."
 ]
 }
 ]
}

 The dataset includes 398 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237332-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.se8yzu
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is 217880"
 ]
}

 The dataset includes 112 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218191-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.