cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ncjsxksx9
title: Dataset for quantification of CFUs using AI

description: In recent years, smartphones and software have developed to help to
 automate imaging processes and thereby support digitalization in clinical
 microbiology laboratories. Due to the time-consuming nature of manual
 bacterial colony counting, diverse apps for smartphones have been
 developed to quantify the number of colony-forming units (CFUs) on agar
 plate images.  Currently, at least four different apps with a
 colony counter function exist. Our study aimed to compare the accuracy of
 the apps compared to human visual manual counting. The images were
 acquired using four different colony counters with three apps on an iPhone
 11 Pro Max (CFU.Ai, Promega Colony Counter, APD Colony Counter App PRO)
 and one app on a Samsung Galaxy A52 (@BactLAB). Two different measurement
 conditions were investigated. Firstly, standardized measurement in a
 handcrafted wooden apparatus, and secondly “freestyle measurement”
 manually holding the plate. The apparatus measurements were performed
 against a black background, apart from @BactLAB on a white background (as
 per the manufacturer’s instructions). We used three different types of
 media: blood agar, chrome agar, and LB. Four Escherichia
 coli isolates were used. We prepared a bacterial suspension of
 each strain, made a six-fold serial 1:10 dilution in saline and spread the
 dilutions “1:104”, “1:105”, and “1:106” at three
 different solution volumes (100μl, 50μl, and 25μl) homogeneously
 across the agar plates. We included a total of 108 agar plates. This
 dataset contains all analyzed images. It may possibly be useful in order
 to assess and improve colony counter apps in the future. On the one hand,
 the dataset contains raw data (images before processing), on the other
 hand, it contains screenshots of our app measurement and thus enables
 accountability of our results (screenshots of all apps were uploaded apart
 from @BactLAB as from its screenshots nothing can be derived).
description: The dataset consists of five
 zip files.  “Images iPhone” and “Images Samsung” contain all
 acquired images (before processing) from the iPhone and Samsung devices,
 respectively. “CFU.Ai”, “Promega Colony Counter” and “APD
 Colony Counter App PRO” contain the screenshots of the various apps after
 the quantification process.
DOI: 10.5061/dryad.n8pk0p2xq
title: Characteristics of medical marijuana dispensary patients

description: Introduction: Despite the rising availability and use of medical marijuana
 (MM) in the U.S., little is known about the demographics, clinical
 characteristics, or quality of life of MM patients. This study describes
 the demographic characteristics and health-related quality of life (HRQoL)
 of MM patients who are initiating treatment in Pennsylvania. Methods: Two
 hundred adults naive to MM and referred for any of the 23 state-approved
 qualifying conditions were recruited at three MM dispensaries in
 Pennsylvania between September 2020 and March 2021. All participants
 consented to the study, completed semi-structured interviews that included
 demographic questionnaires, the Short Form-36 (SF-36), and Generalized
 Anxiety Disorder-7 (GAD-7), provided height and weight measurements, and
 allowed access to their dispensary medical records. Results: Participants
 had a mean age of 48.5 ±15.6 years, predominantly identified as female
 (67.5 %), and were most commonly referred for chronic pain (63.5%) and/or
 anxiety (58.5%). Additionally, 46.0% were living with obesity as
 determined by Body Mass Index (BMI). Relative to a normative sample,
 participants reported diminished HRQoL in several domains, most notably in
 role limitations due to physical health (M = 46.0 ± 42.0), role
 limitations due to emotional problems (M = 52.5 ± 42.3), energy and
 fatigue (M = 39.8 ± 20.2), and pain (M = 49.4 ± 26.0).
 Discussion/Conclusion: Patients initiating MM treatment experienced low
 HRQoL in multiple domains. Future studies could evaluate the relationship
 between HRQoL and patients’ decisions to pursue MM treatment, as well as
 changes in HRQoL with MM use over time.
description: Participants were recruited
 between September 2020 and March 2021 at three dispensary locations in
 central Pennsylvania. Interested patients were introduced to research
 staff utilizing a “warm handoff” from the dispensary pharmacist.
 Pharmacist consultations were conducted via phone and patients who
 expressed interest in the study were transferred to the on-site research
 staff. Interested patients that met the eligibility criteria were invited
 for a brief in-person meeting at the dispensary to complete the informed
 consent process and select assessments (i.e., cognitive assessments,
 height, and weight).  Data were collected and managed in PCOM's
 REDCap. Descriptive statistics (e.g., means, standard
 deviations, and percentages) were calculated to characterize the sample in
 terms of demographic and clinical characteristics, functional status, and
 HRQoL at treatment initiation using SPSS (version 24.0).
description: -9 and -8 represent missing data. Age, weight and height were
 masked or modified, and education, employment, ethnicity, and medical
 histories removed, as required for dataset approval.
DOI: 10.5061/dryad.x69p8czm8
title: Mizagliflozin and Phloretin in experimental PD

description: Here we tested a selective blocker of sodium glucose co-transporter 1,
 mizagliflozin, as well as phloretin, a non-selective blocker of
 facilitative glucose channels in an experimental model of peritoneal
 dialysis in anesthetized Sprague-Dawley rats.
DOI: 10.5281/zenodo.18400098
title: Outer Port of Punta Langosteira (Spain) wave data: 2025-02 - 2025-04

description: Wave agitation data from the Outer Port of Punta Langosteira (A Coruña, Spain), recorded using an OBS-Buoy400 Wave Buoy.

Includes significant wave height (Hs), maximum wave height (Hmax), and peak wave period (Tp) from Feb 2025 to Apr 2025.
DOI: 10.5281/zenodo.18400099
title: Outer Port of Punta Langosteira (Spain) wave data: 2025-02 - 2025-04

description: Wave agitation data from the Outer Port of Punta Langosteira (A Coruña, Spain), recorded using an OBS-Buoy400 Wave Buoy.

Includes significant wave height (Hs), maximum wave height (Hmax), and peak wave period (Tp) from Feb 2025 to Apr 2025.
DOI: 10.5061/dryad.9kd51c5km
title: A B cell actomyosin arc network couples integrin co-stimulation to mechanical force-dependent immune synapse formation

description: B-cell activation and immune synapse (IS) formation with membrane-bound
 antigens are actin-dependent processes that scale positively with the
 strength of antigen-induced signals. Importantly, ligating the B-cell
 integrin, LFA-1, with ICAM-1 promotes IS formation when antigen is
 limiting. Whether the actin cytoskeleton plays a specific role in
 integrin-dependent IS formation is unknown. Here we show using
 super-resolution imaging of mouse primary B cells that LFA-1: ICAM-1
 interactions promote the formation of an actomyosin network that dominates
 the B-cell IS. This network is created by the formin mDia1, organized into
 concentric, contractile arcs by myosin 2A, and flows inward at the same
 rate as B-cell receptor (BCR): antigen clusters. Consistently, individual
 BCR microclusters are swept inward by individual actomyosin arcs. Under
 conditions where integrin is required for synapse formation, inhibiting
 myosin impairs synapse formation, as evidenced by reduced antigen
 centralization, diminished BCR signaling, and defective signaling protein
 distribution at the synapse. Together, these results argue that a
 contractile actomyosin arc network plays a key role in the mechanism by
 which LFA-1 co-stimulation promotes B-cell activation and IS formation.
DOI: 10.15468/dl.6mqez4
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gentianella amarella"
 ]
}

 The dataset includes 256 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003111-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cz8w9gj5s
title: Data from: Foraging decisions with conservation consequences: Interaction between beavers and invasive tree species

description: Herbivore species can either hinder or accelerate the invasion of woody
 species through selective utilization. Therefore, an exploration of
 foraging decisions can contribute to the understanding and forecasting of
 woody plant invasions. Despite the large distribution range and rapidly
 growing abundance of beaver species across the Northern Hemisphere, only a
 few studies focus on the interaction between the beaver and invasive woody
 plants. We collected data on the woody plant supply and utilization at 20
 study sites in Hungary, at two fixed distances from the water. The
 following parameters were registered: taxon, trunk diameter, type of
 utilization, and carving depth. Altogether 5401 units (trunks and thick
 branches) were identified individually. We developed a statistical
 protocol that uses a dual approach, combining whole-database and
 transect-level analyses to examine foraging strategy. Taxon, diameter, and
 distance from water all had a significant effect on foraging decisions.
 The order of preference for the four most abundant taxa was: Populus spp.
 (softwood), Salix spp. (softwood), Fraxinus pennsylvanica (invasive
 hardwood), Acer negundo (invasive hardwood). The diameter influenced the
 type of utilization, as units with greater diameter were rather carved or
 debarked than felled. According to the central-place foraging strategy,
 intensity of the foraging decreased with the distance from the water,
 while both the taxon and diameter selectivity increased. This suggests
 stronger modification of the woody vegetation directly along the
 waterbank, together with a weaker impact further from the water. In
 contrast to invasive trees, for which utilization occurred almost
 exclusively in the smallest diameter class, even the largest softwood
 trees were utilized by means of carving and debarking. This may lead to
 the gradual loss of softwoods or the transformation of them into shrubby
 form. After the return of the beaver, mature stages of softwood stands and
 thus the structural heterogeneity of floodplain woody vegetation could be
 supported by the maintenance of sufficiently large active floodplains. The
 beaver accelerates the shift of the canopy layer’s species composition
 towards invasive hardwood species, supporting the enemy release
 hypothesis. However, the long-term impact will also depend on how plants
 respond to different types of utilization and on their ability to
 regenerate, which are still unexplored issues in this environment. Our
 results should be integrated with knowledge about factors influencing the
 competitiveness of the studied native and invasive woody species to
 support floodplain conservation and reconstruction.
description: Full data processing
 methodology is available in the associated manuscript and its
 appendices.
DOI: 10.5061/dryad.12jm63z0x
title: Mangrove deforestation and degradation areas in Indonesia 2009-2019

description: Mangrove forests are important carbon sinks and this is especially true
 for Indonesia where about 24% of the world’s mangroves exist. 
 Unfortunately, vast expanses of these mangroves have been deforested,
 degraded or converted to other uses resulting in significant greenhouse
 gas emissions. The objective of this study was to quantify the climate
 change mitigation potential of mangrove conservation and restoration in
 Indonesia. We calculated the emission factors from the dominant land uses
 in mangroves, determined mangrove deforestation rates and quantified the
 total emissions and the potential emission reductions that could be
 achieved from mangrove conservation and restoration.  Based upon
 our analysis of the carbon stocks and emissions from land use in mangroves
 we found: (1) Indonesia’s mangrove ecosystem carbon stocks are amongst the
 highest of any tropical forest type; (2) mangrove deforestation results in
 greenhouse gas emissions that far exceed that of upland tropical
 deforestation; (3) in the last decade the rates of deforestation in
 Indonesian mangroves have remained high; and (4) conservation and
 restoration of mangroves promise to sequester significant quantities of
 carbon.  While mangroves comprise only ≈2.6% of Indonesia’s total
 forest area, their degradation and deforestation accounted for ≈10% of
 total greenhouse gas emissions arising from the forestry sector. The large
 source of greenhouse gas emissions from a relatively small proportion of
 the forest area underscores the value for inclusion of mangroves as a
 natural climate solution (NCS). Mangrove conservation is far more
 effective than mangrove restoration in carbon emissions reductions and an
 efficient pathway to achieve Indonesia’s nationally determined
 contribution (NDC) targets. The potential emission reduction from halting
 deforestation of primary and secondary mangroves coupled with restoration
 activities could result in an emission reduction equivalent to 8%
 of Indonesia’s 2030 NDC emission reduction targets from the forestry
 sector.
DOI: 10.5061/dryad.gtht76hpp
title: Impacts of seasonality on gene expression in the Chinese Horseshoe Bat

description: Seasonality can cause changes in many environmental factors which
 potentially affects gene expression. Here, we used a bat species
 (Rhinolophus sinicus) from eastern China as a model to explore the
 molecular mechanisms of seasonal effects, in particular during
 phenological shifts in the spring and autumn. Based on the analysis of 45
 RNA-seq samples, we found strong seasonal effects on gene expression, with
 a large number of genes identified as either specific or biased to each
 season. Weighted gene co-expression network analysis also identified
 multiple modules significantly associated with each season. These seasonal
 genes were further enriched into different functional categories.
 Consistent with effects of phenological shifts on bats, we found that
 genes related to promoting food intake were highly expressed in both
 autumn and spring. In addition, immunity genes were also highly expressed
 in both seasons although this seasonal immune response had tissue
 specificity in different seasons. In female bats, genes related to the
 delay of ovulation (e.g. NPPC, natriuretic peptide precursor type C) were
 highly expressed in October, while genes associated with the promotion of
 reproduction (e.g. DIO2, iodothyronine deiodinase 2) were biasedly
 expressed in April. Lastly, we found multiple known core clock genes in
 both October-biased and April-biased expressed genes, which may be
 involved in regulating the start and end of hibernation, respectively.
 Overall, together with studies in other land and aquatic animals, our work
 supports that seasonal gene expression variations may be a general
 evolutionary response to environmental changes in wild animals.
DOI: 10.26165/juelich-data/locmj6
title: Gebäudedatenbank "BUILDA" API (Informationen aus 3D-Gebäudedaten/OSM und weiteren offenen Quellen)

description: OpenStack Instanz
DOI: 10.5061/dryad.zw3r2289k
title: Drosophila survival after infection and Buletin antibacterial activity data

description: Antimicrobial peptides (AMPs) are key players in innate defence against
 infection in plants and animals. In Drosophila, many host defence peptides
 are produced downstream of the Toll and Imd NF-κB pathways. Use of single
 and compound AMP mutations in Drosophila has revealed that AMPs can
 additively or synergistically contribute to combat pathogens in vivo.
 However, these studies also revealed a high degree of specificity, wherein
 just one AMP can play a major role in combatting a specific pathogen. We
 recently uncovered a specific importance of the antibacterial peptide
 Drosocin for defence against Enterobacter cloacae. Here, we show that the
 Drosocin locus (CG10816) is more complex than previously described. In
 addition to its namesake peptide “Drosocin”, it encodes a second peptide
 generated from a precursor via furin cleavage. We name this peptide
 “Buletin”, and show that it corresponds to the uncharacterized
 “Immune-induced Molecule 7” previously identified by MALDI-TOF. The
 existence of a naturally occurring polymorphism (Thr52Ala) in the CG10816
 precursor protein masked the identification of this peptide previously.
 Using mutations differently affecting the production of these two CG10816
 gene products, we show that Drosocin, but not Buletin, contributes to the
 CG10816-mediated defence against E. cloacae. Strikingly, we observed that
 Buletin, but not Drosocin, contributes to the CG10816-mediated defence
 against Providencia burhodogranariea. Moreover, the Thr52Ala polymorphism
 in Buletin affects survival to P. burhodogranariea, wherein the Alanine
 allele confers better defence than the Threonine allele. However, we found
 no activity of Buletin against either P. burhodogranariea or E. coli in
 vitro. Collectively, our study reveals that CG10816 encodes not one but
 two prominent host defence peptides with different specificity against
 different pathogens. This finding emphasizes the complexity of the
 Drosophila humoral response consisting of multiple host defence peptides
 with specific activities, and demonstrates how natural polymorphisms found
 in Drosophila populations can affect host susceptibility.
DOI: 10.5061/dryad.rn8pk0pd3
title: Data from: Genetic divergence along a climate gradient shapes chemical plasticity of a foundation tree species to both changing climate and herbivore damage

description: Climate change is threatening the persistence of many tree species via
 independent and interactive effects on abiotic and biotic conditions. In
 addition, changes in temperature, precipitation, and insect attacks can
 alter the traits of these trees, disrupting communities and ecosystems.
 For foundation species such as Populus, phytochemical traits are key
 mechanisms linking trees with their environment and are likely jointly
 determined by interactive effects of genetic divergence and variable
 environments throughout their geographic range. Using reciprocal Fremont
 cottonwood (Populus fremontii) common gardens along a steep climatic
 gradient, we explored how environment (garden climate and simulated
 herbivore damage) and genetics (tree provenance and genotype) affect both
 foliar chemical traits and the plasticity of these traits. We found that:
 1) Constitutive and plastic chemical responses to changes in garden
 climate and damage varied among defense compounds, structural compounds
 and nitrogen. 2) For both defense and structural compounds, plastic
 responses to garden climate depended on the climate in which a population
 or genotype evolved. Specifically, trees originating from cool provenances
 showed higher defense plasticity in response to climate changes than trees
 from hotter provenances. 3) Trees from cool provenances growing in cool
 conditions expressed the lowest constitutive defense levels but the
 strongest induced (plastic) defenses. 4) The combination of hot growing
 conditions and simulated herbivory switched the strategy used by these
 genotypes, increasing constitutive defenses but erasing the capacity for
 induction. Because Fremont cottonwood chemistry plays a major role in
 shaping riparian communities and ecosystems in the southwestern US, the
 effects of changes in phytochemical traits can be wide-reaching. As the
 southwestern US is confronted with warming temperatures and insect
 outbreaks, these results improve our capacity to predict ecosystem
 consequences of climate change and inform selection of tree genotypes for
 conservation and restoration purposes.
description: The data set contains all data collected and processes as
 described in the main article : https://doi.org/10.1111/gcb.16275
DOI: 10.5061/dryad.1jwstqjx6
title: Data for: Systematics and taxonomy of the Hymenophyllum polyanthos (Sw.) Sw. complex in the Brazilian Atlantic Forest Domain

description: Hymenophyllum subg. Mecodium is subcosmopolitan and comprises ca. 35
 species. Its neotropical species are poorly known taxonomically. The high
 degree of morphological similarity among the species and the absence of
 clear characters to distinguish them has confounded taxonomic treatments,
 resulting in the lumping of many putative segregate taxa into a broadly
 circumscribed Hymenophyllum polyanthos species complex. The goal of the
 present study was to analyze morphologically and phylogenetically the
 species of Hymenophyllum subg. Mecodium in the Atlantic Forest domain.
 Morphological studies were conducted utilizing traditional
 stereomicroscopy and scanning electron microscopy (SEM). Additionally,
 Bayesian Inference and Maximum Likelihood phylogenetic analyses were
 performed using plastid data for seven markers: atpB, atpB-rbcL, matK,
 rbcL, rbcL-accD, rps4, and rps4-trnS. Seven independent lineages were
 identified in this study, while morphological analysis supported the
 delimitation of five taxa within the Atlantic Forest domain: Hymenophyllum
 apiculatum, H. polyanthos, H. schomburkii, H. undulatum, and, H.
 viridissimum. One taxon, Hymenophyllum sturmii is recognized as a cryptic
 species, formed by two independent evolutionary lineages, and treated here
 provisionally as the H. sturmii complex. A taxonomic revision for the six
 taxa occurring in the Atlantic Forest domain is presented, including seven
 new lectotypifications, along with an identification key, descriptions,
 and illustrations for the species. We also provide data regarding the
 geographical distribution and conservation status of these six
 species.