cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8637563
title: Additional file 4: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Sequence processing report generated automatically by the iMAP to provide a summary of the output. The report was automatically saved in the “reports” folder as “report3_sequence_processing.html”. (HTML 4205 kb)
DOI: 10.6084/m9.figshare.8637557
title: Additional file 3: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Preprocessing report generated automatically by the iMAP to provide a summary of quality control of the reads. The iMAP pipeline automatically saved the output in the “reports” folder as “report2_read_preprocessing.html”. (HTML 3463 kb)
DOI: 10.6084/m9.figshare.8637563.v1
title: Additional file 4: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Sequence processing report generated automatically by the iMAP to provide a summary of the output. The report was automatically saved in the “reports” folder as “report3_sequence_processing.html”. (HTML 4205 kb)
DOI: 10.6084/m9.figshare.8637557.v1
title: Additional file 3: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Preprocessing report generated automatically by the iMAP to provide a summary of quality control of the reads. The iMAP pipeline automatically saved the output in the “reports” folder as “report2_read_preprocessing.html”. (HTML 3463 kb)
DOI: 10.6084/m9.figshare.8637551
title: Additional file 2: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Metadata profiling report generated automatically by the iMAP to provide a summary of the samples and the associated metadata. This report is the initial step in the RAYG (review-as-go) process. The report also displays the R-commands that demonstrates how to reproduce the report. The pipeline is set to automatically save the output in the “reports” folder as “report1_metadata_profiling.html”. (HTML 953 kb)
DOI: 10.6084/m9.figshare.8637551.v1
title: Additional file 2: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Metadata profiling report generated automatically by the iMAP to provide a summary of the samples and the associated metadata. This report is the initial step in the RAYG (review-as-go) process. The report also displays the R-commands that demonstrates how to reproduce the report. The pipeline is set to automatically save the output in the “reports” folder as “report1_metadata_profiling.html”. (HTML 953 kb)
DOI: 10.6084/m9.figshare.8637539
title: Additional file 1: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Format of input files. Includes sample-metadata mappingÂ (sheet 1), sample-read-file mapping in mothur-format (sheet2), and sample-variable mapping (sheet 3, 4 and 5).Â (XLSX 69 kb)
DOI: 10.6084/m9.figshare.8637539.v1
title: Additional file 1: of iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

description: Format of input files. Includes sample-metadata mappingÂ (sheet 1), sample-read-file mapping in mothur-format (sheet2), and sample-variable mapping (sheet 3, 4 and 5).Â (XLSX 69 kb)
DOI: 10.6084/m9.figshare.8637521
title: Additional file 1: of Value of parental concern and clinicianâ s gut feeling in recognition of serious bacterial infections: a prospective observational study

description: Study population, participants and results of parental and clinician questionnaires. Information on the demographic data and outcomes of the study population, as well as data collected in the parental and clinician questionnaires that were analysed for this article. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8637350
title: The annotation of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau

description: The annotation of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau
DOI: 10.6084/m9.figshare.8637521.v1
title: Additional file 1: of Value of parental concern and clinicianâ s gut feeling in recognition of serious bacterial infections: a prospective observational study

description: Study population, participants and results of parental and clinician questionnaires. Information on the demographic data and outcomes of the study population, as well as data collected in the parental and clinician questionnaires that were analysed for this article. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8637338
title: Supplementary Data Table 2 - Data and demographics (pairs) Study 2 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637350.v1
title: The annotation of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau

description: The annotation of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau
DOI: 10.6084/m9.figshare.12369947.v7
title: Mechanisms of the persistent high primary production during the growing season in the Chukchi Sea

description: This item includes the datasets utilized in the article for submission to Ecosystems.
DOI: 10.6084/m9.figshare.8637332
title: Supplementary Data Table 3 - Demographics individuals Study 2 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637335
title: Supplementary Data Table 1 - Data and demographics Study 1 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637338.v1
title: Supplementary Data Table 2 - Data and demographics (pairs) Study 2 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637332.v1
title: Supplementary Data Table 3 - Demographics individuals Study 2 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637335.v1
title: Supplementary Data Table 1 - Data and demographics Study 1 from Visually attending to a video together facilitates great ape social closeness

description: Humans create social closeness with one another through a variety of shared social activities in which they align their emotions or mental states towards an external stimulus such as dancing to music together, playing board games together or even engaging in minimal shared experiences such as watching a movie together. Although these specific behaviours would seem to be uniquely human, it is unclear whether the underlying psychology is unique to the species, or if other species might possess some form of this psychological mechanism as well. Here we show that great apes who have visually attended to a video together with a human (Study 1) and a conspecific (Study 2) subsequently approach that individual faster or spend more time in their proximity than when they had attended to something different. Our results suggest that one of the most basic mechanisms of human social bonding—feeling closer to those with whom we act or attend together—is present in both humans and great apes and thus has deeper evolutionary roots than previously suspected.
DOI: 10.6084/m9.figshare.8637293
title: Academic Hardiness as a Moderator between Evaluative Concerns Perfectionism and Academic Procrastination in Students

description: <b>Academic Hardiness as a Moderator between Evaluative Concerns Perfectionism and Academic Procrastination in Students</b>
DOI: 10.6084/m9.figshare.8637302
title: The unigene of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau

description: The unigene of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau
DOI: 10.6084/m9.figshare.8637290
title: Ding et al. 2019 JVS.

description: <b>The effect of environmental filtering on variation in functional diversity along a tropical elevational gradient</b><b></b>
DOI: 10.6084/m9.figshare.8637290.v1
title: Ding et al. 2019 JVS.

description: <b>The effect of environmental filtering on variation in functional diversity along a tropical elevational gradient</b><b></b>
DOI: 10.6084/m9.figshare.8637284
title: phyto_data_new.csv

description: Tree-level data for long term ant exclusion experiment.
DOI: 10.6084/m9.figshare.8637284.v1
title: phyto_data_new.csv

description: Tree-level data for long term ant exclusion experiment.
DOI: 10.6084/m9.figshare.8637302.v1
title: The unigene of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau

description: The unigene of comprehensive transcriptome for endemic Schizothoracinae fish in the Tibetan Plateau
DOI: 10.6084/m9.figshare.8637260
title: Naturalised status of exotic conifers in New Zealand

description: This paper provides an assessment of the naturalisation status all exotic conifers present in New Zealand using existing herbarium specimens as qualifiers. A total; of 371 exotic taxa are confirmed as having been introduced for cultivation which represents 63% of world conifers that are non-native to New Zealand. In strong contrast to indigenous conifers, introduced conifers are predominantly from the Pineaceae and Cupressaceae families. Naturalised conifers are a major issue for southern hemisphere countries, this paper confirms a total of 57 exotic conifer taxa as wild in New Zealand, including 15 new taxa described as wild since the last comprehensive update. Conifers from the Rocky Mountain and Eastern Asiatic Botanical Regions are prominent among introduced taxa, but naturalised taxa frequently originate from Madrean and Circumboreal Regions. Many of the taxa previously reported as wild have expanded their New Zealand range considerably since their distributions were last described. Despite these increases, most exotic conifers in New Zealand likely occupy a relatively small proportion of the area in which they could establish. The ongoing naturalisation and spread of exotic conifers illustrate the significant environmental weed threat posed by this group.
DOI: 10.6084/m9.figshare.8637260.v1
title: Naturalised status of exotic conifers in New Zealand

description: This paper provides an assessment of the naturalisation status all exotic conifers present in New Zealand using existing herbarium specimens as qualifiers. A total; of 371 exotic taxa are confirmed as having been introduced for cultivation which represents 63% of world conifers that are non-native to New Zealand. In strong contrast to indigenous conifers, introduced conifers are predominantly from the Pineaceae and Cupressaceae families. Naturalised conifers are a major issue for southern hemisphere countries, this paper confirms a total of 57 exotic conifer taxa as wild in New Zealand, including 15 new taxa described as wild since the last comprehensive update. Conifers from the Rocky Mountain and Eastern Asiatic Botanical Regions are prominent among introduced taxa, but naturalised taxa frequently originate from Madrean and Circumboreal Regions. Many of the taxa previously reported as wild have expanded their New Zealand range considerably since their distributions were last described. Despite these increases, most exotic conifers in New Zealand likely occupy a relatively small proportion of the area in which they could establish. The ongoing naturalisation and spread of exotic conifers illustrate the significant environmental weed threat posed by this group.
DOI: 10.6084/m9.figshare.8636894
title: HCT1.sav

description: HCT dataset at Connaught Hospital, Freetown, Sierra leone.
DOI: 10.6084/m9.figshare.8636498
title: Microarray Gene Expression Dataset Re-Analysis Reveals Variability in Influenza Infection and Vaccination.

description: This data is supplementary to the Manuscript Microarray Gene Expression Dataset Re-Analysis Reveals Variability in Influenza Infection and Vaccination by LRK Rogers, G de los Campos and GI Mias. Please consult the README file for an index of the available files.
DOI: 10.6084/m9.figshare.8632370
title: Yes-associated protein 1 regulates proliferation of mesenchymal stem cells by regulating the β-catenin signaling pathway

description: <b>Abstract</b> <b>Objectives:</b> The placenta and umbilical cord are preeminent candidate sources of mesenchymal stem cells (MSCs). However, placenta-derived MSCs (P-MSCs) showed greater proliferation capacity than umbilical cord-derived MSCs (UC-MSCs) in our study. We investigated the drivers of this proliferation difference and elucidated the mechanisms of proliferation regulation.<b></b> <b>Materials and Methods:</b> Proteomic profiling and Gene Ontology (GO) functional enrichment were conducted to identify candidate proteins that may influence proliferation. Using lentiviral or small interfering RNA infection, we established overexpression and knockdown models and observed changes in cell proliferation to examine whether a relationship exists between the candidate proteins and proliferation capacity. Real-time quantitative polymerase chain reaction, western blotting, and immunofluorescence assays were conducted to elucidate the mechanisms underlying proliferation. <b>Results: </b>Six candidate proteins were selected based on the results of proteomic profiling and GO functional enrichment. Through further validation, Yes-associated protein 1 (YAP1) and β-catenin were confirmed to affect MSC proliferation rates. YAP1 and β-catenin showed increased nuclear co-localization during cell expansion. YAP1 overexpression significantly enhanced proliferation capacity and upregulated the expression of both β-catenin and the transcriptional targets of Wnt signaling, CCND1 and c-MYC, whereas silencing β-catenin attenuated this effect. We found that YAP1 directly interacts with β-catenin in the nucleus to form a transcriptional YAP/β-catenin/TCF4 complex. <b>Conclusions: </b>Our study revealed that YAP1 and β-catenin cause the different proliferation capacities of P-MSCs and UC-MSCs. Mechanism analysis showed that YAP1 stabilized the nuclear β-catenin protein, and also triggered the Wnt/β-catenin pathway, promoting proliferation.<b></b>
DOI: 10.6084/m9.figshare.8629853
title: genes_annotations

description: A mapping between different identifiers of genes<br>
DOI: 10.6084/m9.figshare.8625341
title: PMCC_PSet

description: These are the molecular profiles of PMCC breast cancer cell lines used in the paper.<br>
DOI: 10.6084/m9.figshare.8625341.v1
title: PMCC_PSet

description: These are the molecular profiles of PMCC breast cancer cell lines used in the paper.<br>
DOI: 10.6084/m9.figshare.8598548
title: Predicted rasters (.gri files) of 30 triatomine vectors

description: The data files contain .gri objects that contain the predicted relative probability of occurrence for 30 traitomine species (Chagas vectors). The files consist of the predicted probabilities (`predicted-maps-tgb-revision.grd`) and the respective lower (`predicted-cil-tgb-revision.grd`) and upper (`predcited-ciu-tgb-revision.grd`) confidence intervals. Each layer in the raster brick represents one species. <br>They can be read into R using command `raster::brick`. For example: <br>pred_maps sp::plot(pred_maps[["Panstrongylus.megistus"]])
DOI: 10.6084/m9.figshare.8593337
title: Marker data

description: ssr mining, marker design, mapping and annotation data
DOI: 10.6084/m9.figshare.8593337.v2
title: Marker data

description: ssr mining, marker design, mapping and annotation data
DOI: 10.6084/m9.figshare.8593337.v1
title: Marker data

description: ssr mining, marker design, mapping and annotation data
DOI: 10.6084/m9.figshare.8550914
title: Non-typhoidal Salmonella bloodstream infections: surveillance in DR Congo 2007-2017

description: This dataset contains the data on non-typhoidal Salmonella bloodstream infections collected during a blood culture surveillance project in the Democratic Republic of the Congo from 2007-2017. <br>The report "Increase in non-typhoidal <i>Salmonella </i>bloodstream infections in the Democratic Republic of the Congo (2015-2017): emergence of O5-negative <i>Salmonella</i> Typhimurium and alarming rates of resistance" was based on the data available in this dataset.
DOI: 10.6084/m9.figshare.8543132
title: Supplementary Material for: Starting Renal Replacement Therapy: Is It About Time?

description: <b><i>Background:</i></b> Studies of the timing of end-stage renal disease (ESRD) have primarily defined “early” versus “late” initiation of dialysis using estimated glomerular filtration rate (eGFR)-based criteria. Our objective was to determine the theoretical <i>time</i> that could be spent in chronic kidney disease (CKD) stage 5 prior to reaching a conservative eGFR threshold of 5 mL/min/1.73 m<sup>2</sup> compared to the actual time spent in CKD stage 5 by risk factors of interest. <b><i>Methods:</i></b> Eight-hundred and seventy Chronic Renal Insufficiency Cohort participants with CKD stage 5 who started renal replacement therapy (RRT) were included for retrospective study. We used mixed models to estimate the person-specific trajectory of renal function. We then used these individual trajectories to estimate the amount of time that would be spent in CKD stage 5 (between eGFR of 15 and 5 mL/min/1.73 m<sup>2</sup>) and compared this estimate to the actual time spent in CKD stage 5 prior to ESRD (between eGFR of 15 mL/min/1.73 m<sup>2</sup> and ESRD). <b><i>Results:</i></b> We found the median observed time between eGFR of 15 mL/min/1.73 m<sup>2</sup> to RRT was 9.6 months, but the median predicted time between eGFR of 15 mL/min/1.73 m<sup>2</sup> to eGFR of 5 mL/min/1.73 m<sup>2</sup> was 17.7 months. Some of the largest differences between the predicted and actual amount of time spent in CKD stage 5 were noted among those with systolic blood pressure &lt;140 mm Hg (9.7 months longer predicted compared to actual), proteinuria &lt;1 g/g (9.1 months), and serum albumin ≥3.5 g/dL (9.0 months). <b><i>Conclusion:</i></b> We found marked differences between the actual and predicted time spent in CKD stage 5 based on risk factors of interest. We believe that placing timing of dialysis initiation in the perspective of time is novel and may identify subgroups of patients who may derive particular benefit from a more concerted effort to delay RRT.