cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sffw9cbxh6.1
title: Concatenated DNA sequence alignments of CO1, ND1 and 16S rRNA for the land snail Corilla

description: Four concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the Sri Lankan land snail Corilla (Pulmonata: Corillidae). See: Raheem, D.C., Breugelmans, K., Wade, C.M., Naggs, F.C., Backeljau, T., In press, Exploring the shell-based taxonomy of the Sri Lankan land snail Corilla H. and A. Adams, 1855 (Pulmonata: Corillidae) using mitochondrial DNA, Molecular Phylogenetics and Evolution. All datasets aligned using MAFFT v. 7 (Katoh & Standley, 2013, Molecular Biology and Evolution, 30, 772-780). 1) File name: 1_Corilla47seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (42 samples) and 5 other land snails. Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (42 samples) and 5 other stylommatophoran taxa (Albinaria caerulea, Cornu aspersum, Halongella schlumbergeri, Lissachatina fulica and Sculptaria damaraensis damaraensis). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-891 bp (commencing at codon position 3); 16S = 892-2166 bp. 2) File name: 2_Corilla45seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (40 samples) and 5 other land snails. Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (40 samples) and 5 other stylommatophoran taxa (Albinaria caerulea, Cornu aspersum, Halongella schlumbergeri, Lissachatina fulica and Sculptaria damaraensis damaraensis). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-891 bp (commencing at codon position 3); 16S = 892-2163 bp. 3) File name: 3_Corilla42seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (42 samples). Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (42 samples). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-899 bp (commencing at codon position 3); 16S = 900-1361 bp. 4) File name: 4_Corilla40seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (40 samples). Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (40 samples). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-899 bp (commencing at codon position 3); 16S = 900-1360 bp.
DOI: 10.5281/zenodo.197100
title: Training Material For Chip-Seq Analysis

description: The data provided here are part of a Galaxy tutorial that analyzes ChIP-seq data from a study published by Wu et al., 2014 (DOI:10.1101/gr.164830.113). The goal of this study was to investigate "the dynamics of occupancy and the role in gene regulation of the transcription factor Tal1, a critical regulator of hematopoiesis, at multiple stages of hematopoietic differentiation." To this end, ChIP-seq experiments were performed in multiple mouse cell types including a G1E cell line and megakaryocytes, the two cell types represented here. The dataset contains biological replicate Tal1 ChIP-seq and input control experiments (*.fastqsanger files). Because of the long processing time for the large original files, we have downsampled the original raw data files to include only reads that align to chromosome 19 and a subset of interesting genomic loci (ChIPseq_regions_of_interest_v4.bed) pulled from the Wu et al. publication. Also included is a gene annotation file (RefSeq_gene_annotations_mm10.bed) with gene names added for viewing in a genome browser.
description: {"references": ["Afgan, E et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. 44, W3\u2013W10 (2016).", "Wu, W et al. Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis. 24, 1945\u20131962 (2014)."]}
DOI: 10.5281/zenodo.197111
title: Issue Close Time: Datasets + Prediction Classifiers

description: This project contains experiments on predicting the amount of time required to close issue reports in software repositories. Namely, it contains (a) issue lifetime datasets from 10 large software projects and (b) experiment scripts to generate decision tree classifiers that predict issue close time.

<strong>To run the cross-validation experiment:</strong><br>
1. Compile the Java classes by running "make" or "make compile-java" on the command line<br>
2. Configure the experimental setup by changing the variables at the top of run.sh<br>
3. Run "bash run.sh" on the command line<br>
4. Results can be found in out/

<strong>To run the round robin experiment:</strong><br>
1. Compile the Java classes by running "make" or "make compile-java" on the command line<br>
2. Run "bash roundRobin.sh" on the command line<br>
3. Results can be found in out/roundRobin

 

The latest version of this project can be found on GitHub: https://github.com/reesjones/issueCloseTime
DOI: 10.5517/ccdc.csd.cc10lv0g
title: CCDC 941625: Experimental Crystal Structure Determination

description: Related Article: Miaoling Huang|2013|J.Rare Earths|31|689|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccn6pq7
title: CCDC 602259: Experimental Crystal Structure Determination

description: Related Article: Stephen K A. Hashmi, Sascha Schafer, Peter Fischer, Cesar Diez Gil, Jan W. Bats|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccn6pr8
title: CCDC 602260: Experimental Crystal Structure Determination

description: Related Article: Stephen K A. Hashmi, Sascha Schafer, Peter Fischer, Cesar Diez Gil, Jan W. Bats|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccn6ps9
title: CCDC 602261: Experimental Crystal Structure Determination

description: Related Article: Stephen K A. Hashmi, Sascha Schafer, Peter Fischer, Cesar Diez Gil, Jan W. Bats|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12md8c
title: CCDC 1001742: Experimental Crystal Structure Determination

description: Related Article: Seong Huh, Youngmee Kim|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12p5pm
title: CCDC 1003460: Experimental Crystal Structure Determination

description: Related Article: O. A. Nurkenov, S. D. Fazylov, Zh. B. Satpaeva, K. M. Turdybekov, G. Zh. Karipova, A. Zh. Isaeva, S. A. Talipov, B. T. Ibragimov|2015|Zh.Obshch.Khim.|85|62|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccn6pvc
title: CCDC 602263: Experimental Crystal Structure Determination

description: Related Article: Stephen K. A. Hashmi, Sascha Schafer, Peter Fischer, Cesar Diez Gil, Jan W. Bats|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccswy2n
title: CCDC 741832: Experimental Crystal Structure Determination

description: Related Article: Yunling Liu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccszwrc
title: CCDC 744674: Experimental Crystal Structure Determination

description: Related Article: Timothy J. Snape|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccszwsd
title: CCDC 744675: Experimental Crystal Structure Determination

description: Related Article: Timothy J. Snape|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccszwtf
title: CCDC 744676: Experimental Crystal Structure Determination

description: Related Article: Timothy J. Snape|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccszxrd
title: CCDC 744705: Experimental Crystal Structure Determination

description: Related Article: Ze-Bao Zheng|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cct49s0
title: CCDC 748922: Experimental Crystal Structure Determination

description: Related Article: Yunling Liu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cct49t1
title: CCDC 748923: Experimental Crystal Structure Determination

description: Related Article: Yunling Liu|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccvpcwr
title: CCDC 795115: Experimental Crystal Structure Determination

description: Related Article: Alessia Millemaggi, R. J. K. Taylor|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccw4ynl
title: CCDC 809120: Experimental Crystal Structure Determination

description: Related Article: Paulo Martinho, Helge Müller-Bunz, Grace Morgan|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12qtxj
title: CCDC 1005048: Experimental Crystal Structure Determination

description: Related Article: Jan W. Bats, Hans-Wolfram Lerner|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12qtyk
title: CCDC 1005049: Experimental Crystal Structure Determination

description: Related Article: Jan W. Bats, Hans-Wolfram Lerner|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12qtzl
title: CCDC 1005050: Experimental Crystal Structure Determination

description: Related Article: Jan W. Bats, Hans-Wolfram Lerner|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12rbdk
title: CCDC 1005528: Experimental Crystal Structure Determination

description: Related Article: Jan W. Bats, ShengLi Guo|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc12rbfl
title: CCDC 1005529: Experimental Crystal Structure Determination

description: Related Article: Jan W. Bats, ShengLi Guo|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccw4ylj
title: CCDC 809118: Experimental Crystal Structure Determination

description: Related Article: Paulo Martinho, Helge Müller-Bunz, Grace Morgan|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccw4ymk
title: CCDC 809119: Experimental Crystal Structure Determination

description: Related Article: Paulo Martinho, Helge Müller-Bunz, Grace Morgan|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccw98hx
title: CCDC 813269: Experimental Crystal Structure Determination

description: Related Article: Ehsan Fereyduni, Mohammad Kazem Rofouei|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccw9z26
title: CCDC 813938: Experimental Crystal Structure Determination

description: Related Article: Debakanta Tripathy, V. Ramkumar, Dillip Kumar Chand|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccwc19k
title: CCDC 814968: Experimental Crystal Structure Determination

description: Related Article: Ehsan Fereyduni, Mohammad Kazem Rofouei|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccwhcrg
title: CCDC 819136: Experimental Crystal Structure Determination

description: Related Article: Bagautdin Bagautdinov, Kunihisa Sugimoto, Hiroshi Tanaka, Sono Sasaki, Kohji Tashiro, Masaki Takata|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccwhcsh
title: CCDC 819137: Experimental Crystal Structure Determination

description: Related Article: Bagautdin Bagautdinov, Kunihisa Sugimoto, Hiroshi Tanaka, Sono Sasaki, Kohji Tashiro, Masaki Takata|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxgk0x
title: CCDC 848129: Experimental Crystal Structure Determination

description: Related Article: Richard G. Doveston, Richard J.K. Taylor|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxtmbn
title: CCDC 858772: Experimental Crystal Structure Determination

description: Related Article: K. Manoj, Hiroki Takahashi, Hirohito Tsue, Rui Tamura|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxvnm0
title: CCDC 859773: Experimental Crystal Structure Determination

description: Related Article: Cheal Kim, Youngmee Kim|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxybqw
title: CCDC 862349: Experimental Crystal Structure Determination

description: Related Article: Yun Luo, Olivier Guillou, Carole Daiguebonne|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxyj5j
title: CCDC 862518: Experimental Crystal Structure Determination

description: Related Article: Olivier Guillou, Carole Daiguebonne|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.