cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25390711
title: Supplementary Material for: Diagnostic yield of exome sequencing in early onset hypertensive nephropathy in adults

description: Introduction: Hypertensive nephrosclerosis (HN) ranks as one of the most frequent causes of chronic kidney disease (CKD), but its very existence has repeatedly been called into question, especially in young adults. Its diagnostic framework is established chiefly on non-specific clinical criteria and its defining histopathological set of features are in fact shared by numerous other conditions. Genetic testing based on exome sequencing (ES) has emerged as a comprehensive tool to detect Mendelian diseases in timely fashion in nephrology with a significant number of re-established diagnoses. 
The aim of this study was to investigate the diagnostic yield of ES in patients with a clinical diagnosis of hypertensive nephropathy. 
Method: Since September 2018, ES has been readily available as part of the routine diagnostic work-up in our institution. The indication of ES includes hypertensive nephropathy of early onset (i.e., &lt; 45 years old). We retrospectively collected the ES data performed in the context of hypertensive nephropathy in our institution between September 2018 and February 2021. 
Results: A total of 128 patients were sequenced in the context of hypertensive nephropathy with early onset. The chief indications of ES were an early onset of CKD (47%), family history of kidney disease (8%), or both (18%). We detected diagnostic variants in 19 of the 128 patients (15%) encompassing a total of 13 different monogenic disorders. The diagnostic yield of ES was lower in patients of African ancestry (diagnostic yield of 7% versus 30% in non-African ancestry patients, p&lt;0.001). 
Conclusions: The high diagnostic yield of ES (15%) in a population of patients thought to have HN casts further doubts on the validity of the existing diagnosis criteria, including histological criteria, supposed to characterize the condition. This was especially true in patients with no African ancestry where ES positivity reached 30%.
DOI: 10.6084/m9.figshare.25622415
title: Association of maternal and cord vitamin B12 levels with anthropometry in term neonates born to malnourished mothers in Coastal South India

description: Background : Malnourished pregnant women are at increased risk of micronutrient deficiencies. We assessed the vitamin B12 status in both malnourished and normally nourished pregnant women, and their neonates. Additionally we studied the association of maternal B12 levels, cord B12 levels and neonatal anthropometry . Methods : This cross sectional study enrolled 63 malnourished and 63 normally nourished mothers and their neonates. Maternal and cord blood samples were collected at the time of delivery for vitamin B12 estimation. Maternal and cord vitamin B12 levels were compared using Mann Whitney test. Neonatal anthropometry was correlated with maternal and cord B12 levels using Spearman’s correlation. Data was analyzed using SPSS version 25. Results : The mean maternal age was 26.58 yrs. The median cord B12 levels were lesser than the maternal B12 levels. Maternal B12 levels showed a strong positive correlation with cord B12 levels ( rho 0.879 p &lt; 0.001 ). Maternal (p &lt; 0.001) and cord (p &lt; 0.001) B12 were significantly lower in malnourished group in comparison with normally nourished group. In malnourished group , 66.8 % mothers and 95.2 % neonates were vitamin B12 deficient where as 1.5% mothers and 4.7% neonates were Vitamin B12 deficient in normally nourished group. In malnourished group, maternal B12 levels showed positive correlation with birth weight (rho 0.363, p = 0.003) and length (rho 0.330 p =0.008 ) where as in normally nourished group cord B12 levels showed positive correlation with birth weight. (rho 0.277 p= 0.028 ) Conclusion : High rates of vitamin B12 deficiency was observed in malnourished mothers and their neonates .There was a positive correlation of birth weight and length with maternal vitamin B12 levels in malnourished mothers. These findings stress the need to address maternal malnutrition and vitamin B12 deficiency to improve neonatal health.
DOI: 10.6084/m9.figshare.25938457
title: DataFile.rar

description: Radiometric calibration parameters of the instrument;
Instrument polarization calibration parameters;
AOD and CWV images;
Three parameters data required for atmospheric correction;
Aviation flight raw data;
DOI: 10.6084/m9.figshare.26503276
title: Supplementary Material for: Aging Delays Completion of Head Rotation Cycles in Continuous Gaze Stabilization Exercises Despite Putative Healthy Vestibular Function

description: Introduction: aging is associated with loss of balance, with falls being the leading cause of death 
among elderly in the United States. Gaze stabilization exercises (GSE) improve balance control in vestibular populations and could be useful to prevent falls in healthy individuals. However, the extent to which aging affects head kinematics in GSE is unknown. 
Methods: forty-eight young (n=25, 24 ± 6 years, 60% female) and older (n=23, 66 ± 5 years, 56% female) adults completed six 30-second GSE. Participants were asked to maintain gaze fixation on a stationary target while continuously performing head movements in pitch (e.g., vertical) and yaw (e.g., horizontal) directions. The visual target was placed on the wall 1m or 2m away, or hand-held at arm’s length. Head kinematics were recorded with an inertial measurement unit placed on the back of the participants’ head. 
Results: older adults took significantly more time (e.g., delay) to complete cycles of head rotation compared to young participants across all GSE. Such delay was further increased during pitch head rotation while fixating gaze of the 1m target. The range of velocity (ROV) of head rotation, however, was equivalent between groups in all GSE. 
Conclusion: aging leads to the maintenance of head cycle ROV at the expense of delayed cycles of head rotation, suggesting an age-dependent prioritization strategy (e.g., adapt duration first vs range second) during continuous head movements. The distance of the visual target and head movement direction influenced elderly performance and should be considered when prescribing GSE to older populations.
DOI: 10.6084/m9.figshare.26509624
title: Supplementary Material for: Effects of febuxostat therapy on circulating adipokine profiles in patients with overweight or obesity and asymptomatic hyperuricemia: A randomized controlled study

description: Introduction: Elevated levels of serum uric acid (SUA) are strongly associated with several components of the metabolic syndrome, particularly obesity. Previous studies have reported the correlation between SUA levels, xanthine oxidoreductase (XOR) activity, and the imbalanced adipokine levels that are characteristic of obesity. In this study, we explored the effect of febuxostat on circulating adipokine profiles in patients with overweight or obesity and asymptomatic hyperuricemia. Methods: This study was a single-center, randomized and controlled clinical trial that enrolled 130 participants with asymptomatic hyperuricemia and obesity. 117 participants were included in the final analysis, with 60 participants in the febuxostat group and 57 in the control group. We compared the circulating adipokine levels at 3 and 6 months, including high molecular weight (HMW) adiponectin, chemerin, omentin, (monocyte chemotactic protein-1) MCP-1, asprosin, fibroblast growth factor 21 (FGF21), neuregulin-4 (Nrg4), leptin, resistin, vaspin, visfatin, adipsin, and assessed the correlation between changes in adipokine levels (Δadipokines) and changes in XOR activity (ΔXOR) after febuxostat treatment. Results: The results showed that an increase in HMW adiponectin and omentin levels and a decrease in chemerin and asprosin levels at 3 or 6 months compared to the control group. Additionally, a positive correlation was observed between ΔXOR activity and Δasprosin. Furthermore, after adjusting for ΔTG (triglyceride) and ΔSUA (serum uric acid) in multiple linear regression analyses, we found that ΔXOR activity was independently correlated with Δasprosin. Conclusion: This study may provide important evidence that febuxostat could alleviate the imbalance in circulating adipokine levels in patients with overweight or obesity and asymptomatic hyperuricemia. Furthermore, we observed a positive correlation between changes in asprosin levels and changes in XOR activity after febuxostat treatment.
DOI: 10.15129/34945828-c43d-43d1-b6f8-cba1036d379e
title: Data for: "High Speed Single Pixel Imaging using a MicroLED-on-CMOS Light Projector"

description: Data for the article High Speed Single Pixel Imaging using a MicroLED-on-CMOS Light Projector including a video taken using high speed single pixel imaging.
DOI: 10.15129/d73c68e8-2939-4c24-aa6f-085bf87205d1
title: Data for : "Low-cost 3D printed lenses for brightfield and fluorescence microscopy"

description: The dataset contains raw data for the demonstration of 3D printed lens imaging applied to chrome lithographic targets and biological samples. 

Raw files are in .txt format for: 
stylus results showing x displacement & y height for lens curvature data;
and
x displacement and y greyscale values from Image J USAF target line plots;

Raw files are in .bmp format for USAF target images or biological sample images for lossless imaging data.
DOI: 10.15156/bio/2483918
title: UNITE QIIME release for eukaryotes 2

description: Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 3% distance (97% similarity) and 1% distance (99%) threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 3% distance level, some at the 2.5% distance level, some at the 2% distance level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is the same throughout the three sets of files. Includes global and 3% distance singletons.
DOI: 10.15468/dl.nj49bd
title: Occurrence Download

description: A dataset containing 3785 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanus orientalis L."
 ]
}

 The dataset includes 3785 records from 300 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0418935-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/79dcb8xghx.1
title: Scattering of electromagnetic radiation by a multilayered sphere

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The computer implementation of the algorithm for the calculation of electromagnetic radiation scattering by a multilayered sphere developed by Yang, is presented. It has been shown that the program is effective, resulting in very accurate values of scattering efficiencies for a wide range of size parameters, which is a considerable improvement over previous implementations of similar algorithms. The program, named scattnlay, would be the first of its kind to be publicly available. Title of program: scattnlay Catalogue Id: AEEY_v1_0 Nature of problem The scattering of electromagnetic (EM) radiation by a multilayered sphere is an interesting phenomenon to study for the application of such materials in several fields. Just to mention two examples, metal nanoshells (a dielectric core surrounded by a metallic shell) are a class of nanoparticles with tunable optical resonances that can be used, among others, in medicine for optical imaging and photothermal cancer therapy; while in the field of atmospheric sciences, light absorption by aerosols ha ... Versions of this program held in the CPC repository in Mendeley Data AEEY_v1_0; scattnlay; 10.1016/j.cpc.2009.07.010
DOI: 10.18462/iir.hfo.2021.1001
title: Charge limitation estimation of R1243zf/RE170 refrigerant for air conditioning systems for human comfort.
DOI: 10.22003/xfel.eu-data-002593-00
title: Seeded Soft X-Ray Stimulated Emission in Copper
DOI: 10.26180/25584777
title: Fulton et al, 2024_AA restriction confers resistance against multiple stressors

description: data to accompany manuscript
DOI: 10.5066/p98ufig6
title: Plant composition, shrub biomass, and soil biogeochemistry from an experimental drought treatment on the Colorado Plateau

description: These data were compiled for a study that investigated the effects of drought seasonality and plant community composition in a dryland ecosystem. In 2015 U.S. Geological Survey ecologists recorded vegetation and soil moisture data in 36 experimental plots which manipulated precipitation in two plant community types. The experiment consisted of three precipitation treatments: control (ambient precipitation), cool-season drought (-66% ambient precipitation November-April), and warm-season drought (-66% ambient precipitation May-October), applied in two plant communities (perennial grasses with or without a large shrub, Ephedra viridis) over a three-year period. These data were collected from 2015 to 2022 near Canyonlands National Park, UT. These data represent precipitation, soil moisture, percent cover estimates, soil biogeochemistry data (carbon, nitrogen, and phosphorus concentrations) and biomass from experimental treatments. The datasets includes data on when treatments were imposed, ambient precipitation, soil moisture measured at two depths, plant cover and plant biomass measured in the spring and fall from 2015-2019. Additionally, soil cores were collected in the fall 2018 and spring 2019 to measure biogeochemical cycling concentrations for available carbon, nitrogen, phosphorus, and microbial biomass. Standing grass biomass and Ephedra viridis biomass are done through allometric relationships based on a combination of point-frame green hits, leaf lengths, and leaf numbers, combined with double sampling. The biomass data provide an estimate of how treatments are impacting overall grass and shrub species productivity. These data can be used to compare the effects of drought seasonality on shrub and grass communities and biogeochemistry dynamics.
DOI: 10.5258/soton/d2790
title: Dataset supporting the publication "Optical switching beyond a million cycles of low-loss phase change material Sb2Se3"

description: Dataset supporting the publication "Optical switching beyond a million cycles of low-loss phase change material Sb2Se3"".
DOI: 10.5281/zenodo.11399378
title: Data for "CryoDRGN-ET: Deep reconstructing generative networks for visualizing dynamic biomolecules inside cells"

description: Trained models weights, training parameters, sampled density maps, reconstructed density maps for featured classes, and plotting scripts are included for each of the following datasets and training runs:



M. pneumoniae ribosome, initial training run with all 18,466 particles, 1 tilt per particle

M. pneumoniae ribosome, training run with 16,655 filtered particles and 10 tilts per particle

M. pneumoniae ribosome, training run with 16,655 filtered particles and 41 tilts per particle

S. cerevisiae ribosome, initial training run with all 119,031 particles, 10 tilts per particle

S. cerevisiae ribosome, training run with 93,281 filtered particles, 10 tilts per particle

S. cerevisiae ribosome, training run with 30,657 particles in the non-rotated state, 10 tilts per particle

S. cerevisiae ribosome, training run with 62,624 particles in the rotated state, 10 tilts per particle

S. cerevisiae fatty acid synthase, initial training run with all 33,492 particles, 10 tilts per particle

S. cerevisiae fatty acid synthase, training run with all 5,239 filtered particles, 10 tilts per particle
DOI: 10.5281/zenodo.1489120
title: Maven central dependency graph

description: The Maven dependency graph is an open dataset of Maven Central artifacts, their dependencies, as well as other relationships. Its main intent is to domesticate the wild within and around the Maven central ecosystem, in particular, and JVM-based libraries at large, making it more harnessable to both academics and industry. It is intended to answer high-level research questions concerning artifacts releases, evolution, and usage trends over time. It can also be used to assist researchers in selecting relevant datasets, among the mass of existing software artifact, for assessing particular empirical software engineering challenges. The complexity of these questions can range from simple pattern matching to advanced big data analysis and machine learning techniques.<br>
<br>
The accompanying paper to this dataset is has been accepted for publication in the proceedings of the International Conference on Mining Software Repositories 2019 and has received the MSR 2019 Data Showcase Award. This paper is available for download on arXiv.
description: The Maven dependency graph is the fruit of a collaboration between the DiverSE team (Inria Rennes, France) and CASTOR project (KTH, Sweden). Instructions on how to use and reproduce the dataset can be found in the dataset's repository on [Github](https://github.com/diverse-project/maven-miner). A complete description of the dataset and usages can be found in the accompanying [paper] (https://arxiv.org/abs/1901.05392).
DOI: 10.5281/zenodo.3066836
title: Early Instrumental Meteorological Measurements in Switzerland

description: This dataset encompasses early instrumental measurement series that have been gathered and digitised in the context of the Swiss National Science Foundation project Nr. 169676 “Swiss Early Instrumental Measurements for Studying Decadal Climate Variability (CHIMES)”. An overview on the individual series on ZENODO is given in the summary table in the description PDF-file. The dataset, organised alphabetically by location name is provided as a .zip-file. General information and terms of use are indicated on the first page of each file. To find further information about all Swiss measurement series (also the ones not published on ZENODO) consider the full inventory provided separately as CSV-file.
description: {"references": ["Pfister, L., Hupfer, F., Brugnara, Y., Munz, L., Villiger, L., Meyer, L., Schwander, M., Isotta, F. A., Rohr, C., and Br\u00f6nnimann, S.: Swiss Early Instrumental Meteorological Measurements, Clim. Past Discuss., https://doi.org/10.5194/cp-2019-26, in review, 2019."]}
DOI: 10.5281/zenodo.3746592
title: Magnetosheath Jets (Qpar-Qperp) Classification

description: Dataset of magnetosheath jets used in the article “Classification of Magnetosheath Jets Using Neural Networks and High Resolution OMNI (HRO) Data”. The dataset contains the time of observation, the initial classification and the characterization provided by the four different methods presented in the main article. The list has been generated using MMS1 satellite with data from 5/2015 to 6/2019. <em>Notes</em>: 0 = NaN data (No class) 1 = Quasi - Parallel Jet 2 = Quasi - Perpendicular Jet
DOI: 10.5281/zenodo.7461834
title: Derived environmental temperatures at Jezero crater from Air Temperature Sensors' measurements on the Perseverance rover.

description: Material from Version 2 extends derived Air Temperature Sensor data to the first 700 sols of the Mars 2020 mission used in the analysis of Munguira et al. (2024). "One Martian Year of Near-Surface Temperatures at Jezero from MEDA measurements on Mars2020/Perseverance". Journal of Geophysical Research: Planets. [in revision]. We also include the tables needed to generate and reproduce the figures in the paper. Most importantly, the tables include the results from different analyses of temperatures through Fourier series and Reynolds averaging.
DOI: 10.5281/zenodo.7704832
title: Supplementary Data: Collider constraints on electroweakinos in the presence of a light gravitino

description: This record contains the full dataset generated for the study "Collider constraints on electroweakinos in the presence of a light gravitino" by the GAMBIT Collaboration. The record also includes a GAMBIT configuration file and example scripts for plotting. See the README.md file for further details.
DOI: 10.5291/ill-data.9-13-628
title: Monitoring anomalous diffusion and dynamical arrest using elasticand inelastic fixed window scans at neutron backscattering
DOI: 10.6084/m9.figshare.12017181
title: Microtubule self-organisation during seed germination in Arabidopsis

description: This data set is Raw Imaging Data (Z stacks of one replicate) for the paper entitled Microtubule self-organisation during seed germination in Arabidopsis.<br>
DOI: 10.6084/m9.figshare.12630773
title: Zootaxa articles cited as TSV file

description: The TSV file has a header row mostly of CSL terms (e.g., "title", "container-title", "DOI"). The first column ("guid") is the DOI of the Zootaxa article that cites that work, "guid-date" is the date of publication of the Zootaxa article. The final column "unstructured" is the original citation string. Each data row is a single work that is cited, the "guid" field groups together works cited by the same <i>Zootaxa</i> article.<br>
DOI: 10.6084/m9.figshare.25162409
title: Supplementary Material for: Elevated Urine Hyaluronan Concentrations Are Associated with an Unfavorable Respiratory Outcome in Preterm Neonates at 40 Weeks Postmenstrual Age

description: Introduction:
Hyaluronan (HA) is a major component of the extracellular matrix. Increased pulmonary HA concentrations are associated with several respiratory disorders and is a pathophysiological feature of lung disease. We investigated whether elevated urine HA is a biomarker of an unfavorable 40-week respiratory outcome in preterm infants.
Methods:
Infants comprised a cohort of preterm neonates &lt;31 weeks gestational age (GA) from the Prematurity-Related Ventilatory Control (Pre-Vent) multicenter study. HA was quantified in urine obtained at 1 week and 1 month of age. Respiratory status at 40 weeks post-menstrual age (PMA) was classified as unfavorable [either (1) deceased at or before 40 weeks PMA, (2) an inpatient on respiratory medication, O2 or other respiratory support at 40 weeks, or (3) discharged prior to 40 weeks on medications/O2/other respiratory support], or favorable (alive and previously discharged, or inpatient and off respiratory medications, off O2, and off other respiratory support at 40 weeks PMA). The association between urine HA and the unfavorable 40 week PMA outcome was examined using a multivariate logistic generalized estimation equation model.
Results:
Infants with higher HA at 1 week (but not 1 month) showed increased odds of unfavorable respiratory outcome at 40 weeks PMA (OR (95% CI)=1.87 per 0.01 mg (1.27, 2.73)). 
Discussion and Conclusion:
Neonatal urine screening for HA could identify infants at risk for death or need for respiratory support at term-corrected age (40 weeks PMA). The relationship between elevated HA at 1 week and an unfavorable 40 week outcome was stronger in infants with lower GA.