cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6078/d17d8m
title: The dynamics of external water-conduction in the dryland moss Syntrichia

description: Syntrichia relies on external water conduction for photosynthesis,
 survival, and reproduction, a condition referred to as ectohydry.
 Capillarity spaces are abundant in Syntrichia, but the link between
 function and morphology is complex. The aim of this study was to provide a
 better understanding of species-specific morphological traits underlying
 functions of water conduction and storage. We used an environmental
 scanning electron microscope (ESEM) and confocal microscopy for observing
 anatomical characters in the leaves of Syntrichia species. We also
 measured hydration/dehydration curves to understand the rate of conduction
 and dehydration by experimental approaches. Syntrichia is an ectohydric
 moss that can externally transport and store water from the base of the
 stem using capillary action. We propose a new framework to study
 ectohydric capabilities, which incorporates three morphological scales and
 the timing of going from completely dehydrated to fully hydrated.
 Characters of interest in this model include: cell anatomy (papillae
 development, hyaline basal cells, and laminar cells), architecture of the
 stem (concavity and orientation), and whole clump characteristics (density
 of stems). We report significant variation in the speed of conduction,
 water holding capacity, and hydration associated with each species studied
 (11 in total). All Syntrichia species are capable of external water
 conduction and storage, but the relevant traits differ among species.
 These results help to understand potential evolutionary and ecological
 tradeoffs among speed of water conduction, water holding capacity,
 ontogeny, and differing habitat requirements. An integrative view of
 ectohydry in Syntrichia contributes to understanding the water
 relationships of mosses.
DOI: 10.7272/q6wm1bpt
title: Building infrastructure leading to diversity (BUILD) initiative production data share

description: Data are collected from the 2016-2017 Higher Education Research Institute
 (HERI) survey of Building Infrastructure Leading To Diversity (BUILD)
 Initiative faculty and the National Institutes of Health (NIH) progress
 reports for the first four years of the BUILD program (2015-2018). Data
 are productivity outcomes and BUILD research tools used within each of the
 9 institutions analyzed in the manuscript titled, "Enhancing
 grant-writing expertise in BUILD institutions: building infrastructure
 leading to diversity".
description: Data are aggregated within institutions from surveys of
 participants and from progress reports to the study data Coordination and
 Evaluation Center (CEC).
description: Simple text editor
DOI: 10.5061/dryad.tmpg4f51z
title: Using dietary metabarcoding analyses to characterise waterbirds-agriculture interactions

description: Globally, the use of agricultural fields by waterbirds has increased,
 resulting in conflicts with farmers. Designing effective management
 strategies to resolve these conflicts requires understanding the species’
 resource use. Dietary analyses can shed light on the extent of consumption
 of agricultural crops and surrounding natural resources, as well as the
 potential relationship between diet and an individual’s body condition and
 ultimately its fitness. We examined the dietary composition of the
 tropical magpie goose (Anseranas semipalmata), seasonally utilising a
 mixed natural-agricultural landscape of northern Australia. We used DNA
 metabarcoding of intestinal contents from hunted geese to reconstruct
 individual diets and evaluated body condition from morphometric
 measurements. We compared the relative contribution of agricultural and
 natural foods to dietary composition, and investigated how this
 contribution varied spatially, temporally, and among individuals that
 differed in body condition. We found that geese consumed both agricultural
 and naturally occuring plants assigned to at least 35 taxa. The most
 frequent and abundant taxa belonged to three families: Poaceae (grasses),
 Cyperaceae (sedges), and Anacardiaceae (mangoes). Dietary composition
 varied substantially among sampling sites and over time but not with body
 condition of geese. Synthesis and applications. We used a novel approach
 to investigate the diet of a waterbird perceived as problematic across an
 agricultural landscape in tropical Australia. We showed that individuals
 forage opportunistically, and that agricultural crops, while eaten, may
 not represent an essential part of geese diet across the study region. The
 knowledge acquired provides new insights into the species’ foraging
 ecology offering clear alternatives for mitigating goose-agriculture
 interactions. Providing disturbance-free alternative foraging areas or
 minimising the attractiveness of targeted agricultural fields (e.g.,
 shorter grass, alternative ground cover) may alleviate crop consumption
 while benefiting the species’ long-term conservation. While also
 highlighting the limitations of DNA metabarcoding, our dietary study
 emphasises the potential of this methodology to improve our understanding
 of crop damage by wildlife, allowing effective evaluation of management
 requirements.
DOI: 10.5061/dryad.44j0zpch8
title: Salamanders reveal novel trajectories of amphibian MHC evolution

description: Genes of the Major Histocompatibility Complex (MHC) code for immune
 proteins that are crucial for pathogen recognition in vertebrates. MHC
 research in non-model taxa has long been hampered by its genomic
 complexity that makes the locus-specific genotyping challenging. The
 recent progress in sequencing and genotyping methodologies allows an
 extensive phylogenetic coverage in studies of MHC evolution. Here, we
 analysed the peptide-binding region of MHC class I in 30 species of
 salamanders from six families representative of Urodela phylogeny. This
 extensive dataset revealed an extreme diversity of MHC-I in salamanders,
 both in terms of sequence diversity (ca. 3000 variants) and architecture
 (2-22 gene copies per species). The signal of positive selection was
 moderate and consistent between both peptide binding domains, but varied
 greatly between genera. Positions of positively selected sites mostly
 coincided with human Peptide Binding Sites, suggesting similar structural
 properties of MHC-I molecules across distant vertebrate lineages. Finally,
 we provided evidence for the common intra-exonic recombination at MHC-I
 and for the role of life-history traits in the processes of MHC-I
 expansion/contraction. Our study revealed novel evolutionary trajectories
 of amphibian MHC and it contributes to the understanding of the mechanisms
 that generated extraordinary MHC diversity throughout vertebrate
 evolution.
description: Ilumina sequencing
DOI: 10.5281/zenodo.18365911
title: Data and Materials for "Beyond Pride: A Tripartite Motivation Framework for Language Planning in the Balinese Context"

description: This repository contains the anonymised quantitative and qualitative data supporting the study “Beyond Pride: A Tripartite Motivation Framework for Language Planning in the Balinese Context.”

Quantitative data include datasets and JASP analysis files for the pilot exploratory factor analysis (EFA; N = 126), confirmatory factor analysis (CFA; N = 259), and structural equation modeling (SEM; N = 259).

Qualitative data include selected anonymised excerpts from responses to 10 open-ended questions (N = 73), organised thematically to illustrate key findings reported in the article.

Research instruments include the full questionnaire items used in both the pilot and main studies.

All data have been anonymised. Cultural terms are retained in their original form where relevant to preserve contextual meaning.
DOI: 10.5281/zenodo.18365910
title: Data and Materials for "Beyond Pride: A Tripartite Motivation Framework for Language Planning in the Balinese Context"

description: This repository contains the anonymised quantitative and qualitative data supporting the study “Beyond Pride: A Tripartite Motivation Framework for Language Planning in the Balinese Context.”

Quantitative data include datasets and JASP analysis files for the pilot exploratory factor analysis (EFA; N = 126), confirmatory factor analysis (CFA; N = 259), and structural equation modeling (SEM; N = 259).

Qualitative data include selected anonymised excerpts from responses to 10 open-ended questions (N = 73), organised thematically to illustrate key findings reported in the article.

Research instruments include the full questionnaire items used in both the pilot and main studies.

All data have been anonymised. Cultural terms are retained in their original form where relevant to preserve contextual meaning.
DOI: 10.15468/dl.vpga44
title: Occurrence Download

description: A dataset containing 1430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cigaritis lohita"
 ]
}

 The dataset includes 1430 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003187-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.vdncjsxz2
title: Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time

description: Aim: We tested if historical demographic changes of populations occurring
 on the floodplains of a major Amazon Basin tributary could be associated
 with range expansions from upper and middle sections of the river,
 following the establishment of widespread river-created environments
 during the Late Pleistocene and Holocene. Location: Solimões River,
 Western Amazon, South America. Taxon: Myrmoborus lugubris, Thamnophilus
 cryptoleucus and Myrmotherula assimilis. Methods: We explored spatial
 patterns of genetic diversity and connectivity among sampled localities
 using thousands of Ultra-Conserved Elements. Range expansions were tested
 with alternative methods. We quantified habitat preference for the
 analyzed species to test whether the occupation of dynamic habitats could
 predict spatial patterns of genetic diversity. Results: Our study did not
 support shared population range expansions related to historical
 regionalized changes in habitat availability. We found considerable
 variation in the spatial distribution of the genetic diversity between
 studied taxa, and that species with higher levels of specialization to
 dynamic environments have a more heterogeneous distribution of genetic
 diversity and reduced levels of gene flow across space. Main conclusions:
 Our results suggest that demographic expansions along the Solimões River
 might be linked to spatially homogeneous oscillation in the distribution
 of floodplain environments, promoting effective population size changes
 but not range expansion. We found that habitat specificity might be a good
 predictor of population connectivity along the Amazonian floodplains.
DOI: 10.5061/dryad.b2rbnzsjk
title: Correlation analysis of epicardial adipose tissue and ventricular myocardial strain in Chinese amateur marathoners using cardiac magnetic resonance

description: The volume of epicardial adipose tissue (EAT) is associated with an
 increased incidence of cardiovascular disease (CVD); however, only a few
 studies have examined its effect on the myocardial function of endurance
 in athletes. The association between the EAT and the variation of
 myocardial function is still unclear in amateur marathoners. Consequently,
 by using some sedentary individuals as the control, this study aims to
 evaluate the correlation between the EAT volume and the myocardial strain
 in the left and right ventricles of Chinese amateur marathoners by cardiac
 magnetic resonance (CMR).The volume of epicardial adipose tissue (EAT) is
 associated with an increased incidence of cardiovascular disease (CVD);
 however, only a few studies have examined its effect on the myocardial
 function of endurance in athletes. The association between the EAT and the
 variation of myocardial function is still unclear in amateur marathoners.
 Consequently, by using some sedentary individuals as the control, this
 study aims to evaluate the correlation between the EAT volume and the
 myocardial strain in the left and right ventricles of Chinese amateur
 marathoners by cardiac magnetic resonance (CMR).
description: The main manuscript describes how the data was collected or
 generated.
DOI: 10.5061/dryad.qrfj6q5k1
title: Integrative species delimitation reveals fine-scale allopatric speciation in a good-flying insect: A case study on Cylindera pseudocylindriformis complex (Coleoptera, Cicindelidae)

description: Alpha taxonomy is fundamental for many biological fields. Delineation of
 species boundary, however, can be challenging in a species complex, where
 different species share a similar morphology and diagnostic characters may
 not be available. In this context, integrative approaches that incorporate
 molecular and morphological data sets and account for speciation history
 can be helpful to alpha taxonomy. Different approaches to species
 delimitation based on different assumptions are complementary, and by
 integrating the results from multiple approaches we can generate a more
 reliable and objective taxonomic decision. In this study, we applied three
 molecular approaches to species delimitation and inferred the demographic
 history based on an isolation with migration model to test a
 morphologically based taxonomic hypothesis for the Cylindera
 pseudocylindriformis complex. We discuss the association between genetic
 divergence and microhabitat specialization, and we further corroborated
 that C. subtilis sp. nov. is a valid new species by integrating the
 results from model-based species delimitation and the genealogical
 divergence index. We argue that genetic endemism can form at a small
 geographic scale, even in a winged insect-like tiger beetle. Our results
 also indicated that there may still be undocumented species diversity of
 Taiwanese Cylindera remaining to be discovered.
description: These are input data sets for various phylogenetic and species
 delimitation programs.
DOI: 10.5061/dryad.fxpnvx0vz
title: Effects of El Niño drought on seedling dynamics in a seasonally dry tropical forest in northern Thailand

description: As El Niño is predicted to become stronger and more frequent in the
 future, it is crucial to understand how El Niño-induced droughts will
 affect tropical forests. Although many studies have focused on tropical
 rainforests, there is a paucity of studies on them, particularly in Asia,
 and few studies have focused on seedling dynamics, which are expected to
 be strongly affected by drought. Seedlings in seasonally dry tropical
 forests (SDTFs) are generally more drought-tolerant than those in the
 rainforests, and the effects of El Niño-induced droughts may differ
 between SDTF and tropical rainforests. In this study, we explored the
 impact of El Niño-induced drought at an SDTF in northern Thailand by
 monitoring the seedling dynamics at monthly intervals for seven years,
 including a period of strong El Niño. The effects were compared between
 two forest types in an SDTF: a deciduous dipterocarp forest (DDF),
 dominated by deciduous species, and an adjacent lower montane
 forest (LMF) with more evergreen species. El Niño-induced drought
 increased seedling mortality in both forest types. The effect of drought
 was stronger in evergreen than in the deciduous species, resulting in
 higher mortality in the LMF during El Niño. However, El Niño increased
 seedling recruitment only in the DDF, mainly because of the massive
 recruitment of the deciduous oak, Quercus brandisiana (Fagaceae), which
 compensated for the mortality of seedlings in the DDF. As a result, El
 Niño increased seedling density in the DDF and decreased it in the LMF.
 This is the first long-term study to identify the differences in the
 impacts of El Niño on seedlings between the two forest types, DDF and LMF,
 and two leaf habits, evergreen and deciduous, in Southeast Asia. Our
 findings suggest that future climate change may alter the species
 composition and spatial distribution of seedlings in Asian SDTFs.
DOI: 10.15468/dl.63tcgc
title: Occurrence Download

description: A dataset containing 2737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutypa lata"
 ]
}

 The dataset includes 2737 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003189-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quj68z
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Trigonella cancellata"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003190-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gf1vhhmsr
title: Divergent nitrogen and phosphorus allocation strategies in terrestrial plant leaves and fine roots: a global meta-analysis

description: The quantification of the allocation of nitrogen (N) and phosphorus (P)
 among plant organs is essential to improve our understanding of plant
 growth, life-history strategies, and ecosystem nutrient and energy cycles.
 However, allocation strategies of N and P between terrestrial plant leaves
 and fine roots are unclear. Here, we compiled a global dataset comprising
 807 terrestrial plant species to analyze the stoichiometric scaling of N
 and P between leaves and fine roots across species, families, plant
 groups, biomes, and locations. We found that N and P, and N:P ratios
 manifest different scaling exponents (α-values) between leaves and fine
 roots. Specifically, overall αN and αP were &gt;1 and &lt;1,
 respectively, and αN:P = 1, indicating a higher proportional increase of N
 to fine roots and P to leaves. However, there were differences in αN, αP,
 and αN:P among major species, families, plant groups, biomes, and
 locations. In addition, αN and αN:P increased with latitude; there was no
 clear trend for αP. Mean annual temperature accounted for the greatest
 proportion of variation in αN, whereas soil total P accounted for the
 greatest proportion of variation in αP and αN:P. Synthesis. Our results
 demonstrate a divergent N and P allocation strategy between leaves and
 fine roots in terrestrial plants. This study improves our understanding of
 the effects of the environment (including changes in global climate, and
 life history strategies) on nutrient allocation patterns between these two
 important plant organs.
DOI: 10.5061/dryad.jq2bvq8cc
title: Disentangling the interrelated abiotic and biotic pathways linking landscape composition and crop production

description: Landscape composition and its related functional agrobiodiversity (FAB)
 was severely simplified during the last decades. As landscape composition
 is expected to influence the interrelated microclimate and arthropod
 community at different scales, this simplification might have led to a
 decline in multiple agro-ecosystem services, with potential impacts for
 the growth of crops with different demands from the environment. To study
 landscape-scale effects on multi-crop yield and herbivory in combination
 with its potential drivers, including functional arthropod community and
 microclimate, we used standardised 1 m² mini-gardens planted with ten
 different vegetable crops as phytometers. The gardens were installed at
 locations varying in surrounding landscape composition and the vegetables
 were selected to have contrasting requirements in terms of growing
 conditions, pollination services, and susceptibility to pests. Monitoring
 of the mini-gardens was performed in 2018 and 2019 in Flanders (Belgium).
 We found no relationship between landscape composition in a 500 meter
 radius and crop yield. Considering possible mechanisms, we found that an
 increasing share of woody vegetation (&gt; 3 m high) in the
 surrounding landscape is important to buffer the temperature and soil
 moisture variation in the mini-gardens. The share of agricultural land use
 and urban green (&lt; 3 m high) is, respectively, positively and
 negatively related with the activity-density of natural enemies and
 pollinators. The growth of different crops responded differently to higher
 temperature ranges and we found no relation between natural enemies and
 herbivory. In conclusion, these abiotic and biotic pathways did not cause
 an overall relationship between landscape composition and yield.
description: All datasets are compatible with Microsoft Excel and can be
 imported in all programs (R, Python, Matlab ...).
DOI: 10.5061/dryad.jh9w0vtf7
title: Sex, landscape diversity and primary productivity shape the seasonal space use of a migratory European raptor

description: Intrinsic and extrinsic drivers shape the space use of wide-ranging
 raptors. A large proportion of raptors are migrants that shift their
 activity ranges between summer and winter habitats, where they encounter
 different environmental conditions. Analysing the effects of intrinsic and
 extrinsic drivers on the space use in summer and winter habitats provides
 crucial insights into the ecology of migratory raptors. Here, we
 investigated the seasonal space use by 43 red kites (Milvus milvus)
 tracked by GPS-transmitters across central and south-western Europe over
 seven years. We compared space use patterns, i.e., activity range sizes
 and mean daily distances of the birds between summer and winter, and
 analysed the influence of extrinsic (landscape diversity, primary
 productivity) and intrinsic factors (sex). Within summer, we investigated
 the influence of breeding success and sex on activity range sizes. We
 further analysed differences in habitat availability and habitat selection
 between seasons. We found that space use was smaller in summers than in
 winters. When compared to those of males, activity ranges of female red
 kites were larger in summers and smaller in winters, with shorter mean
 daily distances in both seasons. Within summer, successfully breeding red
 kites had smaller activity range sizes in both sexes, but this effect was
 stronger in females than in males. Regardless of the season, landscape
 diversity was positively correlated with space use, whereas primary
 productivity was negatively correlated with it. The habitat use differed
 between seasons, with agricultural landscapes being less proportionally
 used in summers than in winters. Overall, we showed that both intrinsic
 and extrinsic drivers shaped space use in both the seasons, leading to
 differences in space use patterns and habitat use in migratory raptors
 between their summer and winter habitats. Our findings underline the
 importance of consideration of the entire annual cycle of migratory
 species for conservation management.