cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8018816
title: TwaddleData.xlsx

description: The complex life history of the green turtle (<i>Chelonia mydas</i>), where large stage-specific migrations occur throughout its life cycle, make it challenging to accurately estimate population dynamics for management. Basking populations may provide an opportunity to gain insight into the demographic parameters of green turtles. In this study, we assessed whether basking habitats supporting mixed age classes of turtles could be used for such a purpose. Field data were collected from 2006 – 2013. A random effects Cormack-Jolly-Seber modelling approach was used to estimate annual survival probabilities and abundances at a nocturnal basking habitat in Hervey Bay, Queensland (25.28962°S, 152.8309°E).
DOI: 10.6084/m9.figshare.8018813
title: Comparative Pharmacokinetics of Alkaloids and Triterpenes in Rats after Oral Administration of Phellodendron Chinensis Cortex and Its Processed Products

description: <i>Phellodendr</i><i>on</i><i> Chinensis</i> Cortex, also called <i>Chuan Huang Bo</i> (CHB),<i> </i>is widely used in traditional Chinese medicine clinics. Its broad scope of application is dependent on processing it with honey, salt-water, or rice-wine. To elucidate the significance of processing, a UPLC-QqQ-MS method was developed in this study to determine the content of berberine, phellodendrine, magnoflorine, limonin, and obacunone in rat plasma after the oral administration of aqueous extracts of <i>Phellodendr</i><i>on</i><i> Chinensis </i>Cortex and its processed products. Results show that processing CHB alters the bioavailability, absorption, and clearance rate of berberine, phellodendrine, magnoflorine, limonin, and obacunone. There are differences in the <i>in vivo</i> pharmacokinetic behavior of CHB and its processed products of berberine, phellodendrine, magnoflorine, limonin, and obacunone. This paper contributes a pharmacokinetics perspective to the current understanding of the significance of processing CHB with honey, salt-water, and rice-wine.
DOI: 10.6084/m9.figshare.8018816.v1
title: TwaddleData.xlsx

description: The complex life history of the green turtle (<i>Chelonia mydas</i>), where large stage-specific migrations occur throughout its life cycle, make it challenging to accurately estimate population dynamics for management. Basking populations may provide an opportunity to gain insight into the demographic parameters of green turtles. In this study, we assessed whether basking habitats supporting mixed age classes of turtles could be used for such a purpose. Field data were collected from 2006 – 2013. A random effects Cormack-Jolly-Seber modelling approach was used to estimate annual survival probabilities and abundances at a nocturnal basking habitat in Hervey Bay, Queensland (25.28962°S, 152.8309°E).
DOI: 10.6084/m9.figshare.8018813.v1
title: Comparative Pharmacokinetics of Alkaloids and Triterpenes in Rats after Oral Administration of Phellodendron Chinensis Cortex and Its Processed Products

description: <i>Phellodendr</i><i>on</i><i> Chinensis</i> Cortex, also called <i>Chuan Huang Bo</i> (CHB),<i> </i>is widely used in traditional Chinese medicine clinics. Its broad scope of application is dependent on processing it with honey, salt-water, or rice-wine. To elucidate the significance of processing, a UPLC-QqQ-MS method was developed in this study to determine the content of berberine, phellodendrine, magnoflorine, limonin, and obacunone in rat plasma after the oral administration of aqueous extracts of <i>Phellodendr</i><i>on</i><i> Chinensis </i>Cortex and its processed products. Results show that processing CHB alters the bioavailability, absorption, and clearance rate of berberine, phellodendrine, magnoflorine, limonin, and obacunone. There are differences in the <i>in vivo</i> pharmacokinetic behavior of CHB and its processed products of berberine, phellodendrine, magnoflorine, limonin, and obacunone. This paper contributes a pharmacokinetics perspective to the current understanding of the significance of processing CHB with honey, salt-water, and rice-wine.
DOI: 10.6084/m9.figshare.8018756
title: Data from: Optical clearing potential of immersion-based agents applied to thick mouse brain sections

description: <b>Author list</b>Mathew Loren, Christian Crouzet, Adrian Bahani, Vitaly Vasilevko, Bernard Choi<br><b><b><br></b>Abstract</b><br>We have previously demonstrated that the use of a commercially-available immersion-based optical clearing agent (OCA) enables, within 3-6 hours, three-dimensional visualization of subsurface exogenous fluorescent and absorbing markers of vascular architecture and neurodegenerative disease in thick (0.5-1.0mm) mouse brain sections. Nonetheless, the relative performance of immersion-based OCAs has remained unknown. Here, we show that immersion of brain sections in specific OCAs (FocusClear, RIMS, sRIMS, or ScaleSQ) affects both their transparency and volume; the optical clearing effect occurs over the entire visible spectrum and is reversible; and that ScaleSQ had the highest optical clearing potential and increase in imaging depth of the four evaluated OCAs, albeit with the largest change in sample volume and a concomitant decrease in apparent microvascular density of the sample. These results suggest a rational, quantitative framework for screening and characterization of the impact of optical clearing, to streamline experimental design and enable a cost-benefit assessment. <br>
DOI: 10.6084/m9.figshare.8018753
title: CCDB_4043.jpg

description: Triple labeled confocal image of the dentate gyrus of a transgenic mouse engineered to overexpress a mutant form of human alpha synuclein (A53T), immunolabeled for mGluR5 (red), alpha synuclein (green) and counterstained with DAPI (blue) to reveal cell nuclei.
DOI: 10.6084/m9.figshare.8018750
title: CCDB_4003.jpg

description: Correlative microscopic characterization of dendritic spines in a transgenic mouse model of hyperdopaminergia: The dopamine transporter knockout mouse
DOI: 10.6084/m9.figshare.8018747
title: Supplemental Figure

description: <b>Supplemental Figure. Sample expansion and contraction occur in an anisotropic manner. </b>For each sample and each timepoint, the lateral change in area is plotted versus the measured change in sample thickness. If expansion and contraction occurred in an isotropic manner, the data should fall on a parabola. However, a best-fit quadratic model is associated with a R<sup>2</sup>value of 0.24, suggesting that volume changes do not occur in an isotropic manner.<b></b>
DOI: 10.6084/m9.figshare.8018753.v1
title: CCDB_4043.jpg

description: Triple labeled confocal image of the dentate gyrus of a transgenic mouse engineered to overexpress a mutant form of human alpha synuclein (A53T), immunolabeled for mGluR5 (red), alpha synuclein (green) and counterstained with DAPI (blue) to reveal cell nuclei.
DOI: 10.6084/m9.figshare.8018723
title: Supplemental Figure 3

description: <b>Figure S3. Analysis of cAMP FRET signals in PMVECs treated with cAMP elevating compounds.</b> Representative data from Fig. 4 are depicted here showing temporal and spatial cAMP signals in different planes.
DOI: 10.6084/m9.figshare.8018747.v1
title: Supplemental Figure

description: <b>Supplemental Figure. Sample expansion and contraction occur in an anisotropic manner. </b>For each sample and each timepoint, the lateral change in area is plotted versus the measured change in sample thickness. If expansion and contraction occurred in an isotropic manner, the data should fall on a parabola. However, a best-fit quadratic model is associated with a R<sup>2</sup>value of 0.24, suggesting that volume changes do not occur in an isotropic manner.<b></b>
DOI: 10.6084/m9.figshare.8018756.v1
title: Compiled data from manuscript

description: Minimal data for Figure 3-6, Table 1, and Supplemental Figure
DOI: 10.6084/m9.figshare.8018750.v1
title: CCDB_4003.jpg

description: Correlative microscopic characterization of dendritic spines in a transgenic mouse model of hyperdopaminergia: The dopamine transporter knockout mouse
DOI: 10.6084/m9.figshare.8018627
title: CCDB_3998.jpg

description: A slice by slice view from the backprojected volume of Caulobacter crescentus
DOI: 10.6084/m9.figshare.8018615
title: CCDB_3996.jpg

description: Assembled mosaic taken of a coronal slice through the level of anterior hippocampus of an alpha synuclein overexpressing mouse, labeled with antibodies against alpha synuclein (green) and counterstained with Hoescht 33342 to reveal cell nuclei (red). The contrast has been adjusted from the original data for display purposes.
DOI: 10.25380/iastate.8018612
title: Longitudinal Shoe Study: TekScan Mat Scanner Data

description: Images, CSV files, Video, and CSV-like video frame records of 160 participants on a pressure-sensing mat. Data were recorded with and without the participant wearing shoes (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) in the study. The files also include associated measurements and data about shoe wear, surfaces, and wearers.<br><br><br>The pressure scan data is only available for the initial time-point, that is, for shoes that are brand new. <br> <br><br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the Method_Image_Replicate coding outlined in the README.<br><br><br>These files may be used to supplement analysis of the shoe print data over time; we expect that there will be some correspondance between wear pattern development and the distribution of pressure on the foot and shoe sole as the participant walks across the mat.
DOI: 10.6084/m9.figshare.8018627.v1
title: CCDB_3998.jpg

description: A slice by slice view from the backprojected volume of Caulobacter crescentus
DOI: 10.25380/iastate.8018588
title: Longitudinal Shoe Study: 2D Scan Images

description: Images of shoe prints from 160 pairs of shoes (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) made using a 2D digital scanner (EverOS EverSpry) with associated measurements and data about shoe wear, surfaces, and wearers.<br><br>Each pair of shoes was worn for at least 10,000 steps per week over a 6-month period, with multiple measurements of the shoe soles taken initially and during three check-in periods spaced at approximately 5 week intervals.<br><br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the file naming scheme outlined in the README.<br><br>These files can be used to examine wear pattern development, to look for the presence of identifying characteristics among shoes with similar features, and to develop algorithms for matching shoes based on individualizing characteristics. <br>
DOI: 10.25380/iastate.8018606
title: Longitudinal Shoe Study: Vinyl Print Photos

description: Images of 160 shoe prints (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) made on vinyl plank flooring (wood patterned) using fingerprint powder, with associated measurements and data about shoe wear, surfaces, and wearers.<br><br>Each pair of shoes was worn for at least 10,000 steps per week over a 6-month period, with multiple measurements of the shoe soles taken initially and during three check-in periods spaced at approximately 5 week intervals.<br> <br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the Method_Image_Replicate coding outlined in the README.<br><br> These files are intended to provide patterns similar to those which might be found at a crime-scene; they can be used for testing algorithms on images with real-world problems (background patterns, lighting constraints) as well as for white and black-box studies with forensic examiners.
DOI: 10.6084/m9.figshare.8018615.v1
title: CCDB_3996.jpg

description: Assembled mosaic taken of a coronal slice through the level of anterior hippocampus of an alpha synuclein overexpressing mouse, labeled with antibodies against alpha synuclein (green) and counterstained with Hoescht 33342 to reveal cell nuclei (red). The contrast has been adjusted from the original data for display purposes.
DOI: 10.25380/iastate.8018612.v1
title: Longitudinal Shoe Study: TekScan Mat Scanner Data

description: Images, CSV files, Video, and CSV-like video frame records of 160 participants on a pressure-sensing mat. Data were recorded with and without the participant wearing shoes (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) in the study. The files also include associated measurements and data about shoe wear, surfaces, and wearers.<br><br><br>The pressure scan data is only available for the initial time-point, that is, for shoes that are brand new. <br> <br><br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the Method_Image_Replicate coding outlined in the README.<br><br><br>These files may be used to supplement analysis of the shoe print data over time; we expect that there will be some correspondance between wear pattern development and the distribution of pressure on the foot and shoe sole as the participant walks across the mat.
DOI: 10.25380/iastate.8018588.v2
title: Longitudinal Shoe Study: 2D Scan Images

description: Images of shoe prints from 160 pairs of shoes (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) made using a 2D digital scanner (EverOS EverSpry) with associated measurements and data about shoe wear, surfaces, and wearers.<br><br>Each pair of shoes was worn for at least 10,000 steps per week over a 6-month period, with multiple measurements of the shoe soles taken initially and during three check-in periods spaced at approximately 5 week intervals.<br><br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the file naming scheme outlined in the README.<br><br>These files can be used to examine wear pattern development, to look for the presence of identifying characteristics among shoes with similar features, and to develop algorithms for matching shoes based on individualizing characteristics. <br>
DOI: 10.25380/iastate.8018606.v1
title: Longitudinal Shoe Study: Vinyl Print Photos

description: Images of 160 shoe prints (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) made on vinyl plank flooring (wood patterned) using fingerprint powder, with associated measurements and data about shoe wear, surfaces, and wearers.<br><br>Each pair of shoes was worn for at least 10,000 steps per week over a 6-month period, with multiple measurements of the shoe soles taken initially and during three check-in periods spaced at approximately 5 week intervals.<br> <br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the Method_Image_Replicate coding outlined in the README.<br><br> These files are intended to provide patterns similar to those which might be found at a crime-scene; they can be used for testing algorithms on images with real-world problems (background patterns, lighting constraints) as well as for white and black-box studies with forensic examiners.
DOI: 10.6084/m9.figshare.8018555
title: Illinois Hospital Financial Data

description: Public dataset on the finances related to Illinois hospitals and types of reimbursement. Lists 213 hospitals, the cities and counties. Payment types and amounts are listed.
DOI: 10.25380/iastate.8018588.v1
title: Longitudinal Shoe Study: 2D Scan Images

description: Images of 160 shoe prints (“Nike Winflo 4” or “Adidas Seeley”; 4 sizes each) made using a 2D digital scanner (EverOS EverSpry) with associated measurements and data about shoe wear, surfaces, and wearers.<br><br>Each pair of shoes was worn for at least 10,000 steps per week over a 6-month period, with multiple measurements of the shoe soles taken initially and during three check-in periods spaced at approximately 5 week intervals.<br><br>The images are accompanied by 3 CSV files describing the shoes, visit (information collected from surveys along with the shoes), and individual images. The codebooks contain descriptions of the variables in each of the CSV files as well as a more extensive description of the file naming scheme outlined in the README.<br><br>These files can be used to examine wear pattern development, to look for the presence of identifying characteristics among shoes with similar features, and to develop algorithms for matching shoes based on individualizing characteristics. <br>
DOI: 10.6084/m9.figshare.8018513
title: JGR: Biogeosciences 2019 Supporting Data

description: Supporting Data for Ward et al (2019)<br>
DOI: 10.6084/m9.figshare.8018441
title: 2017 Soil data_w pond types.xlsx

description: All data corresponds with the full publication accessible at: https://link.springer.com/epdf/10.1007/s13157-019-01140-3?author_access_token=iYa_s6IyiFIkSGUHW2sAL_e4RwlQNchNByi7wbcMAY76YCVXkEubBIUhdYMZAM8hABnu88otj5tbT7LXsmYK2ELiG-h7Y2vXs4JejuD1IsNVzc0LzSoFlhBPXkN6m_hAXyVNSu2iAuWcdX2ym-27lg==
DOI: 10.6084/m9.figshare.8018441.v1
title: 2017 Soil data_w pond types.xlsx

description: All data corresponds with the full publication accessible at: https://link.springer.com/epdf/10.1007/s13157-019-01140-3?author_access_token=iYa_s6IyiFIkSGUHW2sAL_e4RwlQNchNByi7wbcMAY76YCVXkEubBIUhdYMZAM8hABnu88otj5tbT7LXsmYK2ELiG-h7Y2vXs4JejuD1IsNVzc0LzSoFlhBPXkN6m_hAXyVNSu2iAuWcdX2ym-27lg==
DOI: 10.6084/m9.figshare.8016446
title: Code System and Frequencies

description: This table contains the code system and code frequencies for the interview study "Microservices Migration in Industry: Intentions, Strategies, and Challenges"<br>
DOI: 10.6084/m9.figshare.8016458
title: Natural Language Processing in Qualitative Research

description: Excel spreadsheet of the data from semi-structured interviews with 56 men in the Toledo District of Southern Belize. Interview questions related to a men's health needs assessment study
DOI: 10.6084/m9.figshare.8016128
title: High primary resistance to metronidazole and levofloxacin, and a moderate resistance to clarithromycin in Helicobacter pylori isolated from Karnataka patients

description: Prokka-annotated draft genomes of <i>Helicobacter pylori</i> isolated from patients in Karnataka, India
DOI: 10.6084/m9.figshare.8016053
title: Statistically significant complexes involving 1222 ER alpha interactors

description: Corum complexes analysis
DOI: 10.6084/m9.figshare.8016047
title: Lists of ERalpha molecular partners

description: ERalpha molecular partners before and after RNase treatment
DOI: 10.6084/m9.figshare.8016128.v1
title: High primary resistance to metronidazole and levofloxacin, and a moderate resistance to clarithromycin in Helicobacter pylori isolated from Karnataka patients

description: Prokka-annotated draft genomes of <i>Helicobacter pylori</i> isolated from patients in Karnataka, India
DOI: 10.6084/m9.figshare.8016029
title: Using mineral compositions to indicate the origin of sediments in a tidal flat of an estuarine marsh

description: Given the importance of tidal flats as habitats for a wide range of organisms, a considerable amount of related research has accumulated. However, in Japan, as elsewhere in the world, tidal flats are disappearing because of increasing seaside population, urbanization, and development of coastal industries. We investigated the sediment characteristics of Tsuyabaru Marsh in Japan, using X-ray fluorescence and X-ray diffraction (XRD) analyses to trace their sources. The estuarine Tsuyabaru Marsh comprises a tidal flat, the peripheral basin, the Ooyodo River, and the Yae River. The mineral components of the tidal flat sediment were quartz, mica minerals, kaolinite, plagioclase, and dolomite. To trace the sediment source and characterize the sediment in the Tsuyabaru Marsh, cluster analysis was applied to the peak XRD intensity ratios. A strong similarity was demonstrated between the sediments collected from the tidal flat and the Ooyodo River. A comparably strong similarity was found between sediments from the bottom of Tsuyabaru Marsh and the upstream Yae River section. Our analysis helps understand the sources and distribution of sediments in estuarine marshes.
DOI: 10.6084/m9.figshare.8016050
title: CTAP-ERα nuclear interactors modulated by RNase

description: Statistical analysis
DOI: 10.6084/m9.figshare.8016053.v1
title: Statistically significant complexes involving 1222 ER alpha interactors

description: Corum complexes analysis
DOI: 10.6084/m9.figshare.8016047.v1
title: Lists of ERalpha molecular partners

description: ERalpha molecular partners before and after RNase treatment
DOI: 10.6084/m9.figshare.8016050.v1
title: CTAP-ERα nuclear interactors modulated by RNase

description: Statistical analysis
DOI: 10.6084/m9.figshare.8016029.v1
title: Using mineral compositions to indicate the origin of sediments in a tidal flat of an estuarine marsh

description: Given the importance of tidal flats as habitats for a wide range of organisms, a considerable amount of related research has accumulated. However, in Japan, as elsewhere in the world, tidal flats are disappearing because of increasing seaside population, urbanization, and development of coastal industries. We investigated the sediment characteristics of Tsuyabaru Marsh in Japan, using X-ray fluorescence and X-ray diffraction (XRD) analyses to trace their sources. The estuarine Tsuyabaru Marsh comprises a tidal flat, the peripheral basin, the Ooyodo River, and the Yae River. The mineral components of the tidal flat sediment were quartz, mica minerals, kaolinite, plagioclase, and dolomite. To trace the sediment source and characterize the sediment in the Tsuyabaru Marsh, cluster analysis was applied to the peak XRD intensity ratios. A strong similarity was demonstrated between the sediments collected from the tidal flat and the Ooyodo River. A comparably strong similarity was found between sediments from the bottom of Tsuyabaru Marsh and the upstream Yae River section. Our analysis helps understand the sources and distribution of sediments in estuarine marshes.
DOI: 10.6084/m9.figshare.8015936
title: Impact of different genetic backgrounds on the evolution of elevated antibiotic resistance in the blaADC-7

description: The same blaADC-7 in two different bacterial species yielded different MICs to a range of drugs after evolution in cefepime. Additionally, the 3rd E. coli evolutionary replicate evolved a novel point mutation in blaADC-7: S286R.
DOI: 10.6084/m9.figshare.8015903
title: Análisis de Web SEO

description: Resumen de la comparación de dos páginas web para la asignatura Búsqueda Avanzada de la información (UC3M)