cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/sy3d-cf59
title: Supporting Data for Tunable and Recyclable Polyesters from CO2 and Butadiene

description: These files contain primary data along with associated output from instrumentation supporting all results reported in the referenced manuscript. Findings include: an alternate route to tunable, recyclable polyesters derived from CO2 and butadiene via an intermediary lactone, 3-ethyl-6-vinyltetrahydro-2H-pyran-2-one. Catalytic ring-opening polymerization of the lactone by 1,5,7-triazabicyclo[4.4.0]dec-5-ene yields polyesters with molar masses up to 13.6 kg/mol and pendent vinyl sidechains that can undergo post-polymerization functionalization. The polymer has a low ceiling temperature of 138 ºC, allowing for facile chemical recycling. These results mark the first example of a well-defined polyester derived solely from CO2 and olefins, expanding access to new feedstocks that were once considered unfeasible.
description: Each type of data is collected in a single main folder (e.g., NMR, SEC dRI, etc.) and then separated into corresponding folders.
DOI: 10.26188/62142d7356d1d
title: VRP forecasting

description: VRPs for each asset plus predictors
DOI: 10.4119/unibi/2941052
title: Python Programming Dataset

description: This repository contains programming data collected from 15 students during November and December of 2019 at Bielefeld University. Students were asked to implement gradient descent. Note that this data set contains only source code snapshots and neither timestamps nor personal information. All students programmed in a web environment, which is also contained in this repository.
DOI: 10.7302/z2wm1bk6
title: Data from: Functional traits in cover crop mixtures: biological nitrogen fixation and multifunctionality

description: This dataset contains three data files used in: Blesh, J. 2017. Functional traits in cover crop mixtures: biological nitrogen fixation and multifunctionality. Journal of Applied Ecology. There are also three corresponding metadata files.

The file “Ecosystem_functions_soil_species.csv” contains data organized by farm, treatment, replicate block, and species combining the fall and spring sampling time points. These data include aboveground biomass, nitrogen and carbon content, and biological nitrogen fixation for the plant species. The dataset also includes measured soil characteristics for each farm site. 

The file “Ecosystem_functions_soil_treatment.csv” contains data organized by farm, treatment, and replicate block for the fall and spring sampling time points combined. These data include aboveground biomass, nitrogen and carbon content, and biological nitrogen fixation aggregated by treatment. The dataset also includes measured soil characteristics for each farm site. 

The file “Traits_unstandardized.csv” contains individual plant trait data, a subset of which were used to calculate an index of functional diversity after they were standardized to have zero mean and unit variance. These data are organized by farm, treatment, replicate block, and species. 

The corresponding metadata files: “Ecosystem_functions_soil_species_metadata.csv”,   “Ecosystem_functions_soil_treatment_metadata.csv”, and “Traits_unstandardized_metadata.csv” provide a detailed description of all variables in each dataset and any abbreviations used. 

Note: On Dec 19th 2017, the format of the files was changed to csv to aid preservation. The following information was added to the three metadata files: the name of the data file the metadata refers to, an explanation as to the meaning of blank cells in the data file, a full citation to the paper where the author describes her findings and contact information for the author. 

description: Plant functional traits and ecosystem functions were measured in fall and spring for ten different cover crop treatments (mixtures and monocultures) planted in a randomized complete block design on eight farms in southeastern Michigan. All treatments were established between August 13 and 20, 2015. Baseline characterization of soil properties at each site was conducted prior to planting. Legume nitrogen fixation was measured using stable isotope methods. Full details of the project and methods can be found in: Blesh, J. 2017. Functional traits in cover crop mixtures: biological nitrogen fixation and multifunctionality. Journal of Applied Ecology.
DOI: 10.3886/e166881v1
title: Data and Code for: Expected and Realized Inflation in Historical Perspective

description: These are the replication files to produce the figures and table in our Journal of Economic Perspectives paper about the relationship between actual and expected inflation in historical perspective.
description: United States. Smallest Geographic Unit: United States
DOI: 10.5281/zenodo.6535083
title: Sapporo execution results - broadinstitute/gatk/MitochondriaPipeline

description: See GitHub - sapporo-wes/test-workflow - #broadinstitute/gatk/MitochondriaPipeline.
DOI: 10.25919/5f7ba8554fc6d
title: Population genomics of the Mediterranean fruit fly Ceratitis capitata using RADseq

description: The collection is radseq data representing a reduced representation of the genome of populations of the Mediterranean fruit fly Ceratitis capitata collected from diverse geographical locations worldwide.
DOI: 10.5281/zenodo.6534202
title: Sapporo execution results - nf-core/rnaseq

description: See GitHub - sapporo-wes/test-workflow - #nf-core/rnaseq.
DOI: 10.6084/m9.figshare.19333487.v1
title: Settat_pollinators_2022_data

description: The data presents the flower visitors of FAP fields (i.e. the main crop in 75 % of the field surrounded by marketable habitat enhancement plants in the remaining 25 % area), control fields (i.e. 100% main crop) and the nearby wild flowering plants in Settat (Morocco) in 2019
DOI: 10.5281/zenodo.6612737
title: Sapporo execution results - JGA analysis - per-sample

description: See GitHub - sapporo-wes/test-workflow - biosciencedbc/jga-analysis - per-sample workflow.
DOI: 10.17632/scmz2vr49s.2
title: Surface plasmon resonance dataset of Trypanosoma evansi RoTat1.2 variant surface glycoprotein antigen interaction with monoclonal antibody- coated biosensors

description: The surface plasmon resonance (SPR) bio-(immuno-)sensors are being developed for the diagnosis of infectious diseases, cancers, food safety, etc. The SPR immunosensor using a monoclonal antibody as the capture biomolecule coated onto the gold chip allows direct, rapid, real-time, label-free, quantitative and cost-effective detection of the target antigens as analyte in a test sample. We developed for the first time SPR immunosensors using two monoclonal antibodies, viz., 2E11 (IgG1) and 1C2 (IgG1), produced in our laboratory for real-time, label-free, and rapid detection of their target antigen, i.e., Trypanosoma evansi RoTat 1.2 variant surface glycoprotein (VSG) in sera samples from the laboratory rodents and the field bovines [File 1 pdf]. First, we produced by the hybridoma technique several mAbs that reacted with the T. evansi RoTat 1.2 lysate Ags [File 2 pdf]. One of these mAbs, viz., 2E11 mAb was then used to immunoprecipitate the target Ag in the parasite lysate [Fig. 1A & 1B; File 3 pdf], which was then identified as T. evansi VSG by mass spectrometry [Fig. 2; File 3 pdf & File 4 Excel data]. Both 2E11 and 1C2 mAbs reacted with the VSG Ag in the Western blots [Fig. 3; File 3 pdf]. Then, the interactions of these mAbs with the above VSG Ag in the parasite lysate were analyzed by the respective SPR-immunosensor. The immunosensor was developed by binding of the biotinylated mAbs onto streptavidin immobilized on the gold chip [Dutra, RF and Kubota, LT. (2006). Clinica Chimica Acta. 379, 114-120]. The equilibrium dissociation constants (KD= kd/ka) of mAbs-VSG were determined to be 127 nM (ka=196.4 ± 61.9 s-M-; kd=2.51E-05 s-) for 2E11 mAb and 290 pM (ka=4616.1 ± 170.1 s-M-; kd=1.36E-06 s-) for 1C2 mAb (Table 1 pdf; Files 5 & 6 Excel data; Fig. 4-5 pdf). Further, we produced the SPR data and the sensograms of the interactions of 2E11 and 1C2 mAbs with the VSG Ag in the sera samples of the parasite-infected laboratory rodents as well as the test sera samples from the field cattle and buffaloes [File 7 with Fig. 6-11 Excel data; Fig. 6-11 pdf; File 8 with Fig. 13-17 Excel data; Fig. 12-17 pdf]. In addition, the kinetic parameters of the mAb interactions with two synthetic peptide mimotopes of the VSG were determined (Table 1 pdf; File 9 with Fig. 18-21 Excel data; Fig. 18-21 pdf). The peptide mimotopes of VSG were previously selected by PhD-12 phage display library panning against 2E11 and 1C2 mAbs in another study [Dataset reference: Mendeley Data, V2, doi: 10.17632/bs6pbskc8n.2]. These data provide valuable information for developing the real-time, label-free, SPR- based immunosensors for the diagnosis of surra caused by Trypanosoma evansi infection in a wide variety of domestic, zoo, and wildlife animal species.
DOI: 10.24431/rw1k31z
title: Steller sea lion (Eumetopias jubatus) satellite telemetry data used to determine at-sea distribution in the western-central Aleutian Islands, Alaska 2000-2013

description: For this study we combined telemetry data from satellite-linked transmitters that were deployed on juvenile (n = 39) and adult female (n = 6) Steller sea lions during 2000-2013 in the western and central Aleutian Islands and conducted a spatial analysis to identify patterns of use relative to Steller sea lion (Eumetopias jubatus) critical habitat (50 CFR 226.202) and bathymetry in an area of intense fisheries management measures that were intended to reduce potential competition. Location data (Lander et al Table 1 Argos data) and animal information (Lander et al Table 2 Suppl info) are presented in two CSV files.
DOI: 10.17632/fkyrwttynj.1
title: Northern Malawi (Nyika Plateau) Low-Temperature Thermochronology Data

description: Apatite fission track, Apatite (U-Th-Sm)/He and Zircon (U-Th)/He data for the northern Malawi, Nyika plateau region.
DOI: 10.17632/853gfbbx7m.3
title: IWS1 phosphorylation by AKT3 controls nuclear export of type I IFN mRNAs and sensitivity to viral infection, by regulating the alternative RNA splicing of U2AF2.

description: We have previously shown that loss of IWS1 phosphorylation promotes the alternative RNA splicing of U2 Associated-Factor 2 (U2AF2), resulting in transcripts lacking exon 2. This exon encodes part of the Serine-Rich (SR) domain of U2AF65, which is responsible for its binding with pre-mRNA Processing Factor 19 (Prp19). Here, we show that whereas both U2AF65 isoforms bind cytoplasmic accumulation response elements (CAR-E) of intronless mRNAs, the loading of Prp19 occurs only in exon 2-containing U2AF65, in cells expressing phosphorylated IWS1, promoting their nucleocytoplasmic export. Furthermore, this Prp19 loading is RNA Pol II dependent. Given that IFNA1 and IFNB1 are among the target genes, the expression of IFNα and IFNβ was decreased in cells deficient in IWS1 phosphorylation, and their sensitivity to the oncolytic VSV, Reovirus and Sendai virus infection was increased accordingly. More importantly, treatment of the lung adenocarcinoma cells with the pan-AKT inhibitor, MK2206 phenocopied the loss of IWS1 phosphorylation and showed increased sensitivity to oncolytic viral infection. These data identify a novel mechanism by which the AKT/p-IWS1 axis, via the epigenetic regulation of alternative RNA splicing, contribute to the sensitivity to oncolytic viruses.
DOI: 10.5281/zenodo.4317505
title: Fiji/CellProfiler cell migration timelapse data set and code

description: This zenodo upload consists of: Fiji IJMacro script create_LabelledMasks.ijm<br> CellProfiler pipeline TrackMate_CellProfiler.cppipe<br> Matlab script Plot_per_cell.m <br> <br> Saved manually curated TrackMate project crop_1_60_ManualCuration.xml<br> Saved Spots Results Table of manually curated TrackMate project: Spots in tracks statistics.csv<br> CellProfiler pipeline output cp_output.zip Example data set crop_1_60.tif - subset of image data previously described in: <strong>Shafqat-Abbasi, H., Kowalewski, J. M., Kiss, A., Gong, X., Hernandez-Varas, P., Berge, U., Jafari-Mamaghani, M., Lock, J. G., and Strömblad, S. 2016. An analysis toolbox to explore mesenchymal migration heterogeneity reveals adaptive switching between distinct modes. eLife 5:e11384–e11384.</strong><br> Many thanks to Staffan Strömblad et al. for sharing the data.
DOI: 10.15139/s3/98jfpw
title: BGU Couple Diary Study, 2019

description: Ninety-seven Israeli cohabiting adult couples were recruited and completed an initial background questionnaire. Ten couples dropped out during the study. Mean age for men was 29.9 years (range: 22-65, SD = 8.9) and mean age for women was 29.7 years (range: 22-64, SD = 9.5). All participants had a high-school education, and 67% completed higher education. The average relationship duration was 7.2 years (range: 10 months to 39 years, SD = 8.31 years), and average cohabitation was 4.9 years. Sixty (33.1%) of the couples were married and 30 (17%) had at least one child. Three of the couples were lesbians, all others were heterosexual. At the study initiation, a research assistant introduced the study’s general goal of examining daily processes in intimate relationships. After providing informed consent, participants were asked to complete a background questionnaire. They then receive to their personal email a link to the diary for a period of 3 weeks. The link arrived daily at 8:00 pm, but partners were requested to complete the diary within an hour of going to bed. On average, participants completed 18.4 diaries (SD = 3.38, 87.6% compliance). At the end of the diary couples completed a short follow-up assessment. Couples received no monetary compensation but participated in a raffle for two prizes (vacation vouchers) worth $140.
DOI: 10.5066/f76t0jt4
title: Catchment-flowline network and selected model inputs for an enhanced and updated spatially referenced statistical assessment of dissolved-solids load sources and transport in streams of the Upper Colorado River Basin

description: This USGS data release consists of the synthetic stream network and associated catchments used to develop spatially referenced regressions on watershed attributes (SPARROW) model of dissolved-solids sources and transport in the Upper Colorado River Basin as well as geology and selected Basin Characterization Model (BCM) data used as input to the model.
DOI: 10.6084/m9.figshare.19683768
title: Language as a tool for social bonding: evidence from wild chimpanzee gestural, vocal and bimodal signals: Supplementary Information

description: This is the Supplementary Information for the paper entitled: Language as a tool for social bonding evolved from gestures: evidence from wild chimpanzee gestural, vocal and bimodal signals <br> This paper is forthcoming in Philososhopical Transacations of the Royal Society B.
DOI: 10.17632/bkvcff9dw8.1
title: Detection of organic carbon in Mars-analog paleosols with thermal and evolved gas analysis

description: This study examined the organic carbon content of ~30 million Mars-relevant paleosols with an instrument configured to operate like the Sample Analysis at Mars - Evolved Gas Analysis (SAM-EGA) instrument onboard Curiosity Mars Rover. The files in this data set include the raw TG-DSC-EGA data generated with two instruments, and serve as supplemental materials to the corresponding manuscript.

A Setaram Labsys Evo differential scanning calorimeter (DSC) / thermal gravimeter (TG) connected to a Pfeiffer Omnistar quadrupole mass spectrometer (QMS) was configured to operate similarly to the SAM evolved gas analyzer. The SAM instrument does not have TG/DSC capabilities, but these components permit a better understanding of phase transitions and chemical reactions in laboratory experiments. Approximately 50 mg ± 3 mg of ground paleosol sample were placed in an Al2O3 sample crucible. The sample crucible and an identical empty reference crucible were placed in the furnace and then the system was purged twice with helium gas and set to a pressure of 30 mbar. Helium was chosen as a carrier gas because it is inert and because it used as a carrier gas in the SAM instrument. The crucibles were heated from approximately 35 °C to 1000 °C at a heating rate of 35°C/min and at a flow rate of 10 sccm. Volatiles ranging from mass/charge (m/z) 1 - 100 were measured. 

Next, total organic carbon (TOC) content was determined using a Netzsch TG/DSC coupled to a Pfeiffer QMS. An Al2O3 sample crucible and an identical reference crucible were placed in the furnace. The instrument was purged twice with ultra-high purity O2 and set to a pressure of 1000 mbar prior to sample analyses to remove any contamination in the system. Oxygen was chosen as a carrier gas because it encourages complete combustion of all organic and inorganic carbon in samples. The crucibles containing samples were heated from approximately 35 °C to 1000 °C at a heating rate of 35°C/min and at a flow rate of 19 ml O2/min. A series of three blanks were analyzed before and after each group (n=10) of samples. A calibration curve for CO2 was created by analyzing a calcite standard (Iceland sparry calcite 40 ųM) at eight sample masses ranging from 0.01 – 4 mg. This calibration curve was used to calculate the amount of CO2 evolved from each sample, and these values were used to calculate total carbon in each sample.
Carbon was considered organic between 150-550° C and inorganic from ~700-900° C. Total organic carbon was quantified by deconvolving CO2 peaks if a carbonate-C peak was present. This was done by determining the relative percentage of peak area from inorganic carbon-evolved CO2 (~700-900° C) then subtracting this value from total carbon-evolved CO2 peak area to solve for TOC. All evolved gas plots were background-corrected to account for possible atmospheric contamination.
DOI: 10.17632/xcys7sjg8w.1
title: Zooplankton abundance in the Sea of Japan

description: This is data sets for long-term zooplankton data in the Sea of Japan.  We put R script and data sets.  When use this data, you must cite Hirota and Hasegawa (Hirota Y., Hasegawa S. 1999 The zooplankton biomass in the Sea of Japan. Fish Oceanogr 8(4), 274-283. doi:10.1046/j.1365-2419.1999.00116.x), and our paper (submitted, when accepted we will add).  In addition, you can only use "Sea of Japan" , "Japan Sea", or "日本海”, and the other names of this area are banned, when you use this data set in your documents.
DOI: 10.21227/8jzz-ar98
title: Food portions sales in a canteen context

description: In the catering industry, one major challenge is the unknown short-term demand for dish portions. Meeting these demands is important for the industry but predicting future sales is a challenging task.This data set presents sales of food portions from a canteen in absolute numbers of dish portions per day. In particular, the columns include text-based extractions of ingredients and a date. The data set is intended to be used for forecasting/predicting the food portions on a daily level.
DOI: 10.6084/m9.figshare.19809523.v1
title: Two-Dimensional TiVC Solid-Solution MXene as Surface-Enhanced Raman Scattering Substrate

description: Raw data from the manuscript titled "Two-Dimensional TiVC Solid-Solution MXene as Surface-Enhanced Raman Scattering Substrate" was published in <em>ACS Nano </em>(<em>ACS Nano</em> 2022, 16, 3, 4072–4083).
DOI: 10.6084/m9.figshare.19964480.v5
title: Paid sticker article datasets

description: These are the datasets used for the article titled 'The role of personality traits and engagement factors towards the use of paid stickers in personal communication messages'.
DOI: 10.6084/m9.figshare.20022845.v1
title: Model configurations for studying the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future

description: Model setups that are used to study the influence of antecedent morphology on development of equilibrium bathymetry in estuaries past and future.
DOI: 10.6084/m9.figshare.4805809.v1
title: Automated Fiber Quantification (AFQ) tract profiles for each of the 20 identified fiber tracts in girls and boys

description: <pre>Shown are the Automated Fiber Quantification (AFQ) tract profiles for each of the 20 identified fiber tracts in girls and boys. Plotted are FA, RD, AD, and MD (± SE) along the core of the fiber tract (y-axis) at 100 equidistant points (x-axis). Shaded regions represent locations in which p &lt; 0.05, FDR-corrected.</pre>
DOI: 10.6084/m9.figshare.4805839.v1
title: TRACULA tract profiles for each of the 18 identified fiber tracts in girls and boys

description: <pre>Shown are the TRACULA tract profiles for each of the 18 identified fiber tracts in girls and boys. Plotted are FA, RD, AD, and MD (± SE) along the core of the fiber tract (y-axis) at equidistant points (x-axis). Shaded regions represent locations in which p &lt; 0.05, FDR-corrected.</pre>
DOI: 10.24431/rw1k583
title: Satellite telemetry data used to determine habitat use of adult female Steller sea lions (Eumetopias jubatus) in Alaska, 2010-2016

description: During fall months (October–November) from 2010–2015, satellite transmitters (SPLASH10-F-400 tags; Wildlife Computers, Redmond, WA, USA) were deployed on 16 adult female Steller sea lions (AFSSLs; Eumetopias jubatus) in three regions of Alaska (Southeast Alaska, central Aleutian Islands, and western Aleutian Islands) because there is limited information regarding the habitat use of this age class during winter and populations have yet to recover in western Alaska. All tags were programmed to acquire Fastloc-GPS positions every 15 min and conductivity (wet/dry) readings every 20 min. From 2010 to 2014, tags (n=13) were programmed to transmit dive depth histogram messages, whereas during 2015, tags (n=3) were programmed to transmit dive behavior messages. These datasets were used to examine the spatial distribution and diving behaviors (mean and maximum dive depths, dive frequency) of AFSSLs with respect to a combination of static (distance to shore, sea lion site, and continental shelf break, presence on/off the continental shelf, and bathymetric depth and slope), dynamic (proportion of daylight, fraction of lunar illumination, chlorophyll-a, wind speed, sea surface height, eddy kinetic energy, and sea surface temperature), and other (region, distinct population segment, and season) covariates. All data files are provided in csv format. Tag deployment metadata (e.g. tag type and identification, capture date and location, and individual morphometrics) are presented in "Lander_ATN Tag Deployment Metadata_foraging sea lions_3Mar21.csv." Filtered Fastloc-GPS data for all AFSSL tag deployment periods are compiled in "Lander et al Table 1 GPS Data.csv", and serve as the foundation for Tables 2 & 3. Modeled spatial positions configured for summarized dive depth histogram data collected for AFSSLs tagged during 2010-2014 are compiled in "Lander et al Table 2 Dive Histogram Data." Similarly, modeled spatially explicit positions of maximum dive depths for AFSSL tagged during 2015 are compiled in "Lander et al Table 3 Behavior Data."
DOI: 10.6084/m9.figshare.4805827.v1
title: Automated Fiber Quantification (AFQ) tract profiles for each of the 20 identified fiber tracts in old (age &gt; 13.0 yrs.) and young (age &lt;= 13.0 yrs.) participants

description: <pre>Shown are the Automated Fiber Quantification (AFQ) tract profiles for each of the 20 identified fiber tracts in old (age &gt; 13.0 yrs.) and young (age &lt;= 13.0 yrs.) participants. Plotted are FA, RD, AD, and MD (± SE) along the core of the fiber tract (y-axis) at 100 equidistant points (x-axis). Shaded regions represent locations in which p &lt; 0.05, FDR-corrected.</pre>
DOI: 10.17632/sy3kcttdtx.3
title: A dataset for elderly action recognition using indoor location and activity tracking data

description: This dataset describes the data collected from physical activity and indoor location systems.