cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12615649
title: Saccostrea glomerata (Sydney Rock Oyster) - Meta Analysis Dataset Repository

description: Saccostrea glomerata (Sydney Rock Oyster) - Meta Analysis Dataset Repository:

Dataset used to do 8 separate meta-analyses on the following topics for Saccostrea glomerata (Sydney Rock Oyster):

1.    Ocean acidification and size

2.    Ocean acidification and mortality

3.    Ocean warming and size

4.    Ocean warming and mortality

5.    Transgenerational exposure to ocean acidification and size

6.     Transgenerational exposure to ocean acidification and mortality

7.     Transgenerational exposure to ocean warming effect and size

8.    Transgenerational exposure to ocean warming and mortality

Dataset contains:



Original code and all associated data files in order to reproduce the work within the "Code and Formatted Data" Folder.

Datasheets containing the raw data extracted from the papers identified during the literature searches 


Description of the data and file structure



R-Markdown file contains the original code required to reproduce the results outlined in this paper

All datasheets appended with "_Formatted_For_Effect_Sizes" were used to generate the effect sizes required for the meta-analysis

All datasheets appended with "_Extracted_Raw_Data" are the raw data extracted from the papers identified during the literature searches


Abbreviations



OA - Ocean Acidification

Temp - Temperature

Transgen - Transgenerational Exposure

Mort - Mortality


Abstract

Global oceans are warming and acidifying because of increasing greenhouse gas emissions which are anticipated to have cascading impacts on marine ecosystems and organisms, especially those essential for biodiversity and food security. Despite this concern, there remains some scepticism about the reproducibility and reliability of research done to predict the future climate change impacts on marine organisms. Here we present meta-analyses of over two decades of research on the climate change impacts on an ecologically and economically valuable Sydney rock oyster, Saccostrea glomerata. We confirm with high confidence that ocean acidification has a significant impact on mortality and size of S. glomerata, that ocean warming has a significant impact on mortality, but not size, and transgenerational exposure has positive benefits to offspring. These meta-analyses reveal impacts of climate change on an ecologically and economically significant oyster species and recommends solutions for experimental designs to ensure sustainability of this iconic oyster.
DOI: 10.5281/zenodo.12615650
title: Saccostrea glomerata (Sydney Rock Oyster) - Meta Analysis Dataset Repository

description: Saccostrea glomerata (Sydney Rock Oyster) - Meta Analysis Dataset Repository:

Dataset used to do 8 separate meta-analyses on the following topics for Saccostrea glomerata (Sydney Rock Oyster):

1.    Ocean acidification and size

2.    Ocean acidification and mortality

3.    Ocean warming and size

4.    Ocean warming and mortality

5.    Transgenerational exposure to ocean acidification and size

6.     Transgenerational exposure to ocean acidification and mortality

7.     Transgenerational exposure to ocean warming effect and size

8.    Transgenerational exposure to ocean warming and mortality

Dataset contains:



Original code and all associated data files in order to reproduce the work within the "Code and Formatted Data" Folder.

Datasheets containing the raw data extracted from the papers identified during the literature searches 


Description of the data and file structure



R-Markdown file contains the original code required to reproduce the results outlined in this paper

All datasheets appended with "_Formatted_For_Effect_Sizes" were used to generate the effect sizes required for the meta-analysis

All datasheets appended with "_Extracted_Raw_Data" are the raw data extracted from the papers identified during the literature searches


Abbreviations



OA - Ocean Acidification

Temp - Temperature

Transgen - Transgenerational Exposure

Mort - Mortality


Abstract

Global oceans are warming and acidifying because of increasing greenhouse gas emissions which are anticipated to have cascading impacts on marine ecosystems and organisms, especially those essential for biodiversity and food security. Despite this concern, there remains some scepticism about the reproducibility and reliability of research done to predict the future climate change impacts on marine organisms. Here we present meta-analyses of over two decades of research on the climate change impacts on an ecologically and economically valuable Sydney rock oyster, Saccostrea glomerata. We confirm with high confidence that ocean acidification has a significant impact on mortality and size of S. glomerata, that ocean warming has a significant impact on mortality, but not size, and transgenerational exposure has positive benefits to offspring. These meta-analyses reveal impacts of climate change on an ecologically and economically significant oyster species and recommends solutions for experimental designs to ensure sustainability of this iconic oyster.
DOI: 10.15468/dl.pccfkv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Makalata macrura (Wagner, 1842)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009481-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11560194
title: 30 m canopy height map across China in 2020
DOI: 10.5281/zenodo.11560195
title: 30 m canopy height map across China in 2020
DOI: 10.15468/dl.6h4a7b
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((117.22161 8.3564,117.25345 8.34517,117.298 8.35356,117.37013 8.40499,117.35683 8.47536,117.31422 8.53362,117.24346 8.44663,117.23797 8.41601,117.19326 8.36456,117.22161 8.3564))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009482-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vu7gs
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Mesomys hispidus (Desmarest, 1817)"
 ]
}

 The dataset includes 37 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009483-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2hn55j
title: CCDC 2313287: Experimental Crystal Structure Determination

description: Related Article: Pankaj Kalita, Kusum Kumari, Pawan Kumar, Vierandra Kumar, Saurabh Kumar Singh, Guillaume Rogez, Vadapalli Chandrasekhar|2024|Dalton Trans.|53|10521|doi:10.1039/D4DT00803K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h9140
title: CCDC 2302591: Experimental Crystal Structure Determination

description: Related Article: Rani Gourkhede, Bhupinder Kaur, Basvaraj S. Kote, Maravanji S. Balakrishna|2024|Dalton Trans.|53|10693|doi:10.1039/D4DT00940A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h93hf
title: CCDC 2302664: Experimental Crystal Structure Determination

description: Related Article: Rani Gourkhede, Bhupinder Kaur, Basvaraj S. Kote, Maravanji S. Balakrishna|2024|Dalton Trans.|53|10693|doi:10.1039/D4DT00940A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jpdn9
title: CCDC 2344271: Experimental Crystal Structure Determination

description: Related Article: Rani Gourkhede, Bhupinder Kaur, Basvaraj S. Kote, Maravanji S. Balakrishna|2024|Dalton Trans.|53|10693|doi:10.1039/D4DT00940A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h913z
title: CCDC 2302590: Experimental Crystal Structure Determination

description: Related Article: Rani Gourkhede, Bhupinder Kaur, Basvaraj S. Kote, Maravanji S. Balakrishna|2024|Dalton Trans.|53|10693|doi:10.1039/D4DT00940A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jlz9f
title: CCDC 2341935: Experimental Crystal Structure Determination

description: Related Article: Qiankun Zhou, Ming Chen, Yubo An, Xiaoyan Tang, Ryotaro Matsuda, Yunsheng Ma|2024|Dalton Trans.|53|10416|doi:10.1039/D4DT01014K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k8s3r
title: CCDC 2361924: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Tobias Blömker, Roland Fröhlich, Gerhard Erker|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k8t9z
title: CCDC 2361961: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Gereon Dierker, Roland Fröhlich, Gerhard Erker|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k8w3v
title: CCDC 2362017: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Markus Neumann, Roland Fröhlich, Gerhard Erker|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k9186
title: CCDC 2362177: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Roland Fröhlich, Richard Göttlich|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k91xv
title: CCDC 2362197: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Christoph Herrmann, Roland Fröhlich, Gerhard Erker|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k9322
title: CCDC 2362233: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Christoph Herrmann, Roland Fröhlich, Gerhard Erker|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.csjpyk
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Proechimys brevicauda (Günther, 1877)"
 ]
}

 The dataset includes 201 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009485-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qx8mp
title: Occurrence Download

description: A dataset containing 9557269 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Peru"
 ]
}

 The dataset includes 9557269 records from 2547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbt82r
title: Occurrence Download

description: A dataset containing 1822993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HostingOrganizationKey is c4f66525-4d36-4c18-82ac-98e088f54db4",
 "Year 2000-2021"
 ]
}

 The dataset includes 1822993 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015654-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn2tbk
title: Occurrence Download

description: A dataset containing 1628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lutjanus viridis (Valenciennes, 1846)"
 ]
}

 The dataset includes 1628 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032929-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw34kd
title: Occurrence Download

description: A dataset containing 1283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bruguiera gymnorhiza (L.) Lam."
 ]
}

 The dataset includes 1283 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083221-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjoodp
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verticordia chrysantha Endl.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 106 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047153-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuo4rc
title: Occurrence Download

description: A dataset containing 6450 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"1929697","matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"equals","key":"BASIS_OF_RECORD","value":"PRESERVEDSPECIMEN","matchCase":false}]}

 The dataset includes 6450 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023186-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekxf7b
title: Occurrence Download

description: A dataset containing 15632 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchotus rufescens (Temminck, 1815)"
 ]
}

 The dataset includes 15632 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071154-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdbcvv
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verticordia drummondii Schauer",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047159-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d458gq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((77.03613 41.79199,118.78418 41.79199,118.78418 68.15918,77.03613 68.15918,77.03613 41.79199))",
 "TaxonKey is Cortinarius violaceus (L.) Gray"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083227-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jim3jt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verticordia fragrans A.S.George",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047164-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqp9wa
title: Occurrence Download

description: A dataset containing 2052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-14.15558 39.54088,8.15558 39.54088,8.15558 48.45912,-14.15558 48.45912,-14.15558 39.54088))",
 "HasCoordinate is true",
 "TaxonKey is Galemys pyrenaicus (É.Geoffroy Saint-Hilaire, 1811)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2052 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015020-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpwvjk
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Alsophila spinulosa (Wall. ex Hook.) R.M.Tryon"
 ]
}

 The dataset includes 297 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083240-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsjqyg
title: Occurrence Download

description: A dataset containing 338256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rumex obtusifolius L."
 ]
}

 The dataset includes 338256 records from 807 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008145-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17866257
title: Supplementary data
DOI: 10.5281/zenodo.17866258
title: Supplementary data
DOI: 10.13130/rd_unimi/ui9ecn/1jhudb
title: Agosto_1880_Pagina_001.jpg

description: Bulletin of 1880/08/01
DOI: 10.13130/rd_unimi/ui9ecn/6lep4r
title: Agosto_1880_Pagina_002.jpg

description: Bulletin of 1880/08/01
DOI: 10.13130/rd_unimi/ui9ecn/mfrwmr
title: Agosto_1880_Pagina_003.jpg

description: Bulletin of 1880/08/01
DOI: 10.13130/rd_unimi/ui9ecn/c2ma0e
title: Agosto_1880_Pagina_004.jpg

description: Bulletin of 1880/08/01
DOI: 10.13130/rd_unimi/ui9ecn/jx60ve
title: Agosto_1880_Pagina_005.jpg

description: Bulletin of 1880/08/02
DOI: 10.13130/rd_unimi/ui9ecn/lt9prj
title: Agosto_1880_Pagina_006.jpg

description: Bulletin of 1880/08/02
DOI: 10.13130/rd_unimi/ui9ecn/mn2e6h
title: Agosto_1880_Pagina_007.jpg

description: Bulletin of 1880/08/02
DOI: 10.13130/rd_unimi/ui9ecn/sd2th4
title: Agosto_1880_Pagina_008.jpg

description: Bulletin of 1880/08/02
DOI: 10.13130/rd_unimi/ui9ecn/fi868z
title: Agosto_1880_Pagina_009.jpg

description: Bulletin of 1880/08/03
DOI: 10.13130/rd_unimi/ui9ecn/pt8kar
title: Agosto_1880_Pagina_011.jpg

description: Bulletin of 1880/08/03
DOI: 10.13130/rd_unimi/ui9ecn/rozcqx
title: Agosto_1880_Pagina_010.jpg

description: Bulletin of 1880/08/03
DOI: 10.13130/rd_unimi/ui9ecn/bumo7z
title: Agosto_1880_Pagina_012.jpg

description: Bulletin of 1880/08/03
DOI: 10.13130/rd_unimi/ui9ecn/e6dthx
title: Agosto_1880_Pagina_013.jpg

description: Bulletin of 1880/08/04
DOI: 10.13130/rd_unimi/ui9ecn/ugcslr
title: Agosto_1880_Pagina_014.jpg

description: Bulletin of 1880/08/04
DOI: 10.13130/rd_unimi/ui9ecn/kvbcaa
title: Agosto_1880_Pagina_015.jpg

description: Bulletin of 1880/08/04
DOI: 10.13130/rd_unimi/ui9ecn/asb1uv
title: Agosto_1880_Pagina_016.jpg

description: Bulletin of 1880/08/04