cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zrmmen
title: Occurrence Download

description: A dataset containing 1032 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora alata Curtis"
 ]
}

 The dataset includes 1032 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005315-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmnxv9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Coleoptera",
 "Country is Andorra"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196062-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m74pmb
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glis glis (Linnaeus, 1766)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-5.14 50.97,-5.14 53.65,1.75 53.65,1.75 50.97,-5.14 50.97))",
 "Year 1960-2020"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005315-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgwh3w
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Bruguiera cylindrica (L.) Blume"
 ]
}

 The dataset includes 69 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052227-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urnfc5
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus africana (Hook.fil.) Kalkman"
 ]
}

 The dataset includes 1024 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152923-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctasqu
title: Occurrence Download

description: A dataset containing 1913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1835-2017",
 "HasCoordinate is true",
 "TaxonKey is Schinus terebinthifolia Raddi",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1913 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005315-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmm34c
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Owstonia fallax Smith-Vaniz & Johnson, 2016"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067026-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8snmn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Actinidia eriantha var. calvescens C.F.Liang, Actinidia eriantha Benth., Actinidia eriantha var. brunnea C.F.Liang, Actinidia eriantha f. alba C.F.Gan)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2003",
 "Year is less than or equal to 2023",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086607-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6fp24
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observatoire Pelagis - Reseau National Echouage (French stranding network) strandings 1934-2020",
 "Geometry POLYGON((163.2633 -20.38655,165.32659 -22.52604,167.81039 -23.06771,168.16946 -22.20102,168.32604 -21.61478,168.48262 -21.2961,167.28111 -20.43729,166.74784 -20.11091,165.11816 -20.43729,163.8727 -19.47774,163.2633 -20.38655))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dugong Lacépède, 1799"
 ]
}

 The dataset includes 62 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140259-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pgvp8
title: Occurrence Download

description: A dataset containing 3345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arctostaphylos bicolor (Nutt.) A.Gray"
 ]
}

 The dataset includes 3345 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086643-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fvdx8
title: Occurrence Download

description: A dataset containing 15248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nectria cinnabarina (Tode) Fr., Fusarium cicatricum (Berk.) O'Donnell & Geiser)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 15248 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246626-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wy4fka
title: Occurrence Download

description: A dataset containing 1023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-2000.0",
 "GadmGid is FRA.8_1",
 "TaxonKey is Triticum L.",
 "Year 1970-2023"
 ]
}

 The dataset includes 1023 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086689-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxttan
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Basananthe malaissei A.Robyns"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086693-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbjthj
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dahlia rudis P.D.Sørensen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 63 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064364-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6ub28
title: Occurrence Download

description: A dataset containing 2792774 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Philippines"
 ]
}

 The dataset includes 2792774 records from 1791 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011614-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25402/pme.19328831
title: Supplementary Table 1 - Investigating underlying human immunity genes, implicated diseases, and their relationship with the COVID-19

description: Supplementary Table
 1: COVID-19 WGS data download information.
DOI: 10.57841/casdc.0003490
title: 面内外延应变调控二维CrSe2和CrTe2的层内及层间磁耦合-原始数据
DOI: 10.25402/pme.19328834.v1
title: Supplementary Table 3 - Investigating underlying human immunity genes, implicated diseases, and their relationship with the COVID-19

description: Supplementary Table
 3: Common genes-diseases.
DOI: 10.25402/fsoa.9117002
title: Supplementary Table 1. Leveraging phytochemicals: the plant phylogeny predicts sources of novel antibacterial compounds

description: <br>Antibacterial plant taxa used in this study. Antibacterial plant
 taxa, their mechanisms of action, and corresponding GenBank numbers are
 tabulated. The rbcL sequence of another congeneric species was used when the
 exact species cited in the article was not available in GenBank.<br>
DOI: 10.25402/pme.20089616.v1
title: A novel epigenetic biomarker, plasma miR-138-5p gene promoter-methylated DNA, for colorectal cancer diagnosis - Supplementary table 1

description: A novel epigenetic biomarker, plasma miR-138-5p gene promoter-methylated DNA, for colorectal cancer diagnosis - Supplementary table 1
DOI: 10.25402/pme.21609333.v1
title: Identification of DPYD variants and estimation of uracil and dihydrouracil in a healthy Indian population - Supplementary File

description: Background: 5-fluorouracil (5-FU) is a medicine used in cancer treatment. It
is eliminated from body by the enzyme DPD. Identifying deficiency in DPD before initiating 5-FU can
save patients from oral, intestinal, and bone marrow toxic effects. Methods: The uracil and dihydrouracil
(DHU, produced by DPD enzyme action) levels were measured and DPD gene (for identifying defects)
was sequenced in 100 healthy adults. Results: Participants with DPD gene sequence that is known to be
defective had higher plasma uracil levels and a low DHU-to-uracil ratio compared with those who did
not have a defective gene. Conclusion: Measuring plasma uracil and DHU-to-uracil ratio can help identify
people with defective DPD genes.
DOI: 10.25402/pme.24081525.v1
title: Cost-effectiveness of extended DPYD testing before fluoropyrimidine chemotherapy in metastatic breast cancer in the UK - Supplementary material

description: Appendix Table 1 Age and sex specific mortality rates and population utility in the Netherlands and United Kingdom
DOI: 10.25402/pme.24117858.v1
title: Lessons learnt from the application of the HEcoPerMed guidance to three modelling case studies - Supplementary material

description: Appendix Table 1 Recommendations of the Guidance for the Harmonisation and Improvement of Economic Evaluations of Personalised Medicine applied in the NTRK case studyAppendix Table 2 Recommendations of the Guidance for the Harmonisation and Improvement of Economic Evaluations of Personalised Medicine applied in the ToxNav case studyAppendix Table 3 Recommendations of the Guidance for the Harmonisation and Improvement of Economic Evaluations of Personalised Medicine applied in the MODY case study<br>
DOI: 10.25402/fsoa.13227893.v1
title: Supplementary data: The Effect of Patient Satisfaction Scores on Physician Job Satisfaction and Burnout

description: Physician burnout is recognized as reversible
with the potential to negatively influence quality of care and patient
outcomes. The study objective was to evaluate associations between patient satisfaction
scores (PSS) and physicians’ perceptions of job satisfaction and burnout via a
physician survey. 82/107 report PSS are institutionally tracked, with 23/107
and 39/107 reporting PSS utilization in financial compensation or performance
review, respectively. 54/107, report pressure to emphasize PSS; 63/107, report
PSS having negative effect on job satisfaction; 31/107 considered leaving their
job or career due to PSS; and 84/107 report PSS contribute to burnout. In the
cohort of physicians treating patients with spine pain who responded to this
survey, PSS are associated with decreased job satisfaction and increased
burnout. The survey is provided.
DOI: 10.25402/fsoa.14036372
title: Supplementary data: Idarucizumab (Praxbind®) for dabigatran reversal in patients undergoing heart transplantation: a cohort of 10 patients.docx

description: <b>Supplementary Table 1</b>. Idarucizumab (Praxbind®) for dabigatran reversal in patients undergoing heart transplantation: a cohort of 10 patients Baseline characteristics of the patients.
DOI: 10.25402/fsoa.14036372.v1
title: Supplementary data: Idarucizumab (Praxbind®) for dabigatran reversal in patients undergoing heart transplantation: a cohort of 10 patients.docx

description: <b>Supplementary Table 1</b>. Idarucizumab (Praxbind®) for dabigatran reversal in patients undergoing heart transplantation: a cohort of 10 patients Baseline characteristics of the patients.
DOI: 10.25402/fsoa.14333327
title: Supplementary Material. The histone modification H3K4me3 is altered at the ANK1 locus in Alzheimer’s disease brain.

description: <b>Supplementary
 Material</b>. The
 histone modification H3K4me3 is altered at the ANK1 locus in Alzheimer’s
 disease brain.
 
 Background
 Several
 epigenome-wide association studies of DNA methylation have highlighted
 altered DNA methylation in the <i>ANK1 </i>gene
 in Alzheimer’s disease brain samples. However, no study has specifically examined
 <i>ANK1 </i>histone modifications in the
 disease.
 
 Methods
 We
 use chromatin immunoprecipitation-qPCR to quantify tri-methylation at histone
 3 lysine 4 (H3K4me3) and 27 (H3K27me3) in the <i>ANK1</i> gene in entorhinal cortex from donors with high (N= 59) or
 low (N=29) Alzheimer’s pathology.
 
 Discussion
 We
 demonstrate decreased levels of H3K4me3, a marker of active gene
 transcription, with no change in H3K27me3, a marker of inactive genes.
 H3K4me3 is negatively correlated with DNA methylation in specific regions of
 the <i>ANK1 </i>gene.
 
 Conclusions
 Our
 study suggests that the <i>ANK1 </i>gene
 shows altered epigenetic marks indicative of reduced gene activation in
 Alzheimer’s disease.
 
 
 
<br>
DOI: 10.25402/fsoa.14452665
title: Validation of red cell distribution width as a COVID-19 severity screening tool: Supplementary tables 1 & 2

description: <b>Supplementary
 Tables</b>. Validation of red cell distribution width
 as a COVID-19 severity screening tool
 
 Multivariate logistic Regression Analysis of 331 COVID-19 patients for
 clinical signs and outcomes (categorical variables)
 
 <b>Graphical Abstract. </b>Validation of red cell
 distribution width as a COVID-19 severity screening tool
 
 Aim:
 The aim of this study is the predictive validation of red cell distribution
 width (RDW) in COVID-19 patients. Method: In total, 331 COVID-19 patients
 were classified as severe and non-severe groups based on the WHO standard
 criteria. The levels of RDW standard deviation (SD) were evaluated as both
 continuous and categorical variables. Multivariate statistical analyses were
 used. Results: RDW-SD ≤43 and ≤47 (fL) thresholds showed high specificity
 (90.1% to 91.4%) for diagnosing non-severe illness and no risk of death.
 RDW-SD&gt;47 indicated severe illness and a high mortality risk while
 43
DOI: 10.25402/fsoa.14452665.v1
title: Validation of red cell distribution width as a COVID-19 severity screening tool: Supplementary tables 1 & 2

description: <b>Supplementary
 Tables</b>. Validation of red cell distribution width
 as a COVID-19 severity screening tool
 
 Multivariate logistic Regression Analysis of 331 COVID-19 patients for
 clinical signs and outcomes (categorical variables)
 
 <b>Graphical Abstract. </b>Validation of red cell
 distribution width as a COVID-19 severity screening tool
 
 Aim:
 The aim of this study is the predictive validation of red cell distribution
 width (RDW) in COVID-19 patients. Method: In total, 331 COVID-19 patients
 were classified as severe and non-severe groups based on the WHO standard
 criteria. The levels of RDW standard deviation (SD) were evaluated as both
 continuous and categorical variables. Multivariate statistical analyses were
 used. Results: RDW-SD ≤43 and ≤47 (fL) thresholds showed high specificity
 (90.1% to 91.4%) for diagnosing non-severe illness and no risk of death.
 RDW-SD&gt;47 indicated severe illness and a high mortality risk while
 43
DOI: 10.25402/fvl.16999417.v1
title: Supplementary Table 5a.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 5a</b>: The list of
 experimentally determined Spike protein epitopes along with their start and
 end positions, as predicted from 8 independent studies.
DOI: 10.25402/fvl.16999426.v1
title: Supplementary Table 5b.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 5b</b>: The list of
 bioinformatically predicted Spike protein epitopes along with their start and
 end positions, as predicted from 3 independent studies, given in individual
 sheets
DOI: 10.14278/rodare.2863
title: Collinstown Hyperspectral Drillcore Data

description: This hyperspectral drillcore dataset (shed) contains 10 drill holes, totalling 413 boxes that cumulatively contain 2845 meters of scanned cores. Hyperspectral data is stored in the widely used ENVI format (.dat and associated .hdr files), which can be opened using e.g., napari-hippo (GUI) and hylite (python). The whole directory structure is compatible with hycore, for easier out-of-core processing and visualisation.

These hyperspectral data and associated visualisations can also be viewed interactively here.

These cores intersect stratigraphic units of the Lower Carboniferous Irish Midlands, including the Lucan Formation (Upper Dark Limestones), the Feltrim Formation (Boulder Conglomerate), the Slane Castle Formation (Argillaceous Bioclastic Limestone), the Meath Formation (Shaley Pale Limestones unit), the Liscarton Formation (Mixed Beds unit), and Lower Paleozoic basement rocks.

Scanning was conducted on cores such that a variety of lithology, sedimentary facies, proximity to mineralization, alteration intensity, and dolomitization intensity were sampled.

These data were acquired as part of the Horizons Europe project Vector. Teck Ireland is acknowledged for providing access to core material and assisting with the hyperspectral scanning logistics.
DOI: 10.14278/rodare.2864
title: Collinstown Hyperspectral Drillcore Data

description: This hyperspectral drillcore dataset (shed) contains 10 drill holes, totalling 413 boxes that cumulatively contain 2845 meters of scanned cores. Hyperspectral data is stored in the widely used ENVI format (.dat and associated .hdr files), which can be opened using e.g., napari-hippo (GUI) and hylite (python). The whole directory structure is compatible with hycore, for easier out-of-core processing and visualisation.

These hyperspectral data and associated visualisations can also be viewed interactively here.

These cores intersect stratigraphic units of the Lower Carboniferous Irish Midlands, including the Lucan Formation (Upper Dark Limestones), the Feltrim Formation (Boulder Conglomerate), the Slane Castle Formation (Argillaceous Bioclastic Limestone), the Meath Formation (Shaley Pale Limestones unit), the Liscarton Formation (Mixed Beds unit), and Lower Paleozoic basement rocks.

Scanning was conducted on cores such that a variety of lithology, sedimentary facies, proximity to mineralization, alteration intensity, and dolomitization intensity were sampled.

These data were acquired as part of the Horizons Europe project Vector. Teck Ireland is acknowledged for providing access to core material and assisting with the hyperspectral scanning logistics.
DOI: 10.25402/fvl.19096973
title: Supplementary_materials: Efficacy of lopinavir-ritonavir combination therapy for the treatment of hospitalized COVID-19 patients: A meta-analysis

description: <b>Table
 S1 </b>PRISMA checklist
 
 <b>Table
 S2 </b>MEDLINE search strategy
 
 <b>Table
 S3 </b>EMBASE search strategy
 <b> </b>
 <b>Table
 S4 </b>PubMed search strategy
 
 <b>Table
 S5 </b>CNKI search strategy
 
 <b>Table
 S6 </b>Wanfang search strategy
 
 <b>Table
 S7 </b>Wanfang Med Online search strategy
 
 <b>Table
 S8 </b>SinoMed search strategy
 
 <b>Table
 S9 </b>CQVIP search strategy<br><b>Figure</b> <b>1–38</b>
 
 


<br>
DOI: 10.25402/fvl.17206286.v1
title: Supplementary tables 1–7: A systematic review and meta-analysis of the sensitivity of antibody tests for the laboratory confirmation of COVID-19

description: Table S1: Antibody type within 7 days of onset of
 symptoms subgroup meta-analysis heterogeneity
 Table S2: Overall antibody type subgroup
 meta-analysis heterogeneity
 Table S3: Comparison of sensitivity at 7 days*
 Table S4: Comparison of overall
 sensitivity and specificity 
 
 Table S5: Comparison of overall
 sensitivity, specificity as per the test antigen<br>
 Table S6: Summary of specificity and sensitivity 7
 days post symptom onset based on different antigens for CLIA, LFIA and ELISA
 Table S7: Serological test summary of
 overall specificity and sensitivity based on LFIA, CLIA and ELISA