cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22800638.v2
title: Long-read-based genome assembly reveals numerous endogenous viral elements in the green algal bacterivore <i>Cymbomonas tetramitiformis</i>

description: Additional data for the paper Gyaltshen, Rozenberg et al (2023) Long-read-based genome assembly reveals numerous endogenous viral elements in the green algal bacterivore <i>Cymbomonas tetramitiformis</i>, Genome Biol Evol 15(11):evad194. doi:10.1093/gbe/evad194.The files are as follows:Genome annotationInferno_Rfam.tblout - results of ncRNA predictiontRNA-ScanSE.tab - tRNA predictionsbraker_fixed.faa - protein sequencesbraker_fixed.gff - corrected gff gene annotationsbraker_original.gtf - original braker gene annotationseggnog.emapper.annotations - eggnog functional annotationsinterproscan.xml - interproscan functional annotations (xml)interproscan.tsv - interproscan functional annotations (tsv)RED.bed - genome masking (unmodified RED masking)masking.bed - genome masking (RED masking [subtracting regions of gene homologs in other prasinophytes] and viral elements)Viruses<br>All_MCP_sequences.zip - all PLV and NCLDV MCP protein sequencesViruses_mcl_genes.tsv - clustering and function predictions for genes from selected viral elements using remote homologyViruses_phylogeny_AG_03_multigene.jtree - multigene phylogeny of AG_03 and related viruses, in jtree formatViruses_phylogeny_PLVs_MCP.jtree - PLV phylogeny based on MCP, in jtree formatViruses_phylogeny_AG_03_multigene.jtreeViruses_phylogeny_AG_03_multigene.zipViruses_phylogeny_PLVs_MCP.jtreeViruses_phylogeny_PLVs_MCP.zipViruses_locations_including_fragments.bedViruses_representatives.zipjcf7180000139292_CtGEV.gbk - annotation of scaffold jcf7180000139292 (CtGEV with a PLVB insert) in Genbank formatjcf7180000174485_CHeCME.gbk - annotation of scaffold jcf7180000174485 (a CHeCME representative flanked by two near-identical RT genes) in Genbank formatBacteria.zip - bacterial scaffoldsBusco.zip - busco resultsCymbomonas_tetramitiformis_genome.gbf - annotated genome in Genbank formatCymbomonas_tetramitiformis_genome.faa - protein sequences in fasta format<br>
DOI: 10.6084/m9.figshare.1221540.v1
title: Adjacency Matrices of Primate Skulls

description: Adjacency matrices of the skull of 18 primates and 2 outgroup primatomorphs analyzed in the article: REF.
DOI: 10.6084/m9.figshare.5129893.v1
title: Supplementary Material for: Older Adults' Use of Retrieval Strategies in Everyday Life

description: <b><i>Background:</i></b> Despite declines in cognitive abilities, older adults often perform comparable to younger adults in everyday tasks [J Am Geriatr Soc 1999;47:172-183]. Older adults may compensate for cognitive declines by using more efficient strategies. People often improve their efficiency by switching from an algorithmic strategy where information is computed or looked-up, to a strategy where the information is retrieved directly from memory [J Exp Psychol Gen 1988;117:258-275]. However, older adults are reluctant to shift from algorithmic strategies to retrieval strategies in the laboratory, and this reluctance to use retrieval is driven by both bottom-up (slower learning) and top-down influences (memory confidence, motivation to be quick/accurate) [Psychol Aging 2004;19:452-466; Mem Cognit 2004;32:298-310]. <b><i>Objective:</i></b> We investigated whether bottom-up and top-down factors influence younger and older adults' decisions to use retrieval-based or algorithmic strategies in everyday life. <b><i>Methods:</i></b> In two studies, participants completed a daily diary for 5 (study 1) or 7 (study 2) days. Participants were asked if and how they completed daily activities within several everyday task domains. They also indicated for how long and how often they completed the specific activity (bottom-up factors), as well as how confident they were in using their memory and how motivated they were to perform the specific activity quickly and accurately (top-down influences). <b><i>Results:</i></b> Both studies provided evidence for bottom-up and top-down influences. Additionally, study 2 found that top-down factors (memory confidence and motivation to be quick) were more important for older compared to younger adults. <b><i>Conclusion:</i></b> These results indicate that strategy choices influence older adults' cognitive efficiency in everyday as well as laboratory learning.
DOI: 10.17632/n8x59pmjpt
title: CAM in DM: Findings from studies included in Scoping Review

description: Characteristics and Findings from studies included in Scoping Review
DOI: 10.6084/m9.figshare.21973685.v1
title: Appendix B. Supply chain sustainability maturity levels

description: Appendix B to the article Supply Chain Sustainability: A Model to assess the maturity level
DOI: 10.6084/m9.figshare.27321264.v1
title: <b>Welfare Impacts of Agricultural Technology Utilization Choices among Rice Farmers in the Anchor Borrowers’ Program in Southwest Nigeria</b>ed Item

description: An assessment of the impacts of agricultural technology utilization choices of an input subsidy program (ABP) beneficiaries in Nigeria
DOI: 10.6084/m9.figshare.8312408.v1
title: Low Level Repository FAIR Overview

description: This dataset acts as a reference point for a practice paper that surveyed 5 subject specific data repositories and 5 generalist data repositories.<br>This dataset offers a high level analysis of 10 repositories in an attempt not only to assess the levels of FAIR-ness, but to provide a number of simple recommendations to help standardize the academy’s data repository infrastructure and bolster interoperability<br>
DOI: 10.17632/fgf86jdfg6
title: The Diffusion-Simulated Connectivity Dataset

description: The Diffusion-Simulated Connectivity Dataset was generated from three numerical phantoms and Monte-Carlo simulation of the diffusion-weighted MRI signal [Rafael-Patino et al., Frontiers in Neuroinformatics, 2020]. The dataset was created to evaluate diffusion-weighted MRI methods, such as voxel-wise fiber orientation estimation, tractography, and structural connectome estimation. Each phantom was constructed from synthetic tubular fibers (strands) ranging in diameter from 1.4μm to 4.2μm. Phantoms geometry was obtained using the optimization procedure included in the Numerical Fiber Generator [Close et al., NeuroImage, 2009]. For each phantom, sixteen regions of interest (ROIs) located on the surface of a sphere are connected through a variable number of strands. The strands form complex white matter configurations that include kissing, branching, and crossing at different angles. The weights of the three 16x16 ground truth connectivity matrices are defined by the total cross-sectional area of the strands forming the connections.

The three phantoms have a volume of 1 cubic millimeter, divided into a 40x40x40 voxel image matrix. After the Monte-Carlo simulation of the diffusion-weighted MRI signals, the image header is set to a voxel size of 1.0 mm isotropic, creating a final image size of 4x4x4 cm³, compatible with conventional diffusion-weighted MRI methods. Additionally, the dataset contains images of 2.0 mm isotropic resolution, resulting in an image matrix of 20x20x20 voxels. The diffusion-weighted MRI simulation protocol includes 360 diffusion-weighted images and 4 non-diffusion-weighted images (b=0 s/mm²). The diffusion-weighted MRI signals are distributed on 4 b-shells (b=1000, 1925, 3094, 13191 s/mm²). The dataset includes the signal generated with the Monte Carlo simulation and the same signal corrupted with various levels of Rician noise. Additionally, the dataset contains the relevant phantom's ground-truth information, including:
i) voxel maps indicating the number of strands, the volume fraction occupied by the strands, and their corresponding average diameter,
ii) label maps of the location of the 16 ROIs, 
iii) strands' centerline trajectories, as well as their diameter and ending ROIs, 
iv) strand voxel-wise orientation distribution functions (ODF) images, and
v) three-dimensional substrate meshes used for the Monte Carlo simulation.
DOI: 10.6084/m9.figshare.28777215.v1
title: Metamorphism overprint in mafic–ultramafic cumulates in the Mangabal and Americano do Brasil Complexes, Brasilia Belt, Brazil

description: Local chemistry of sample MNN 19, used for pseudosection
DOI: 10.6084/m9.figshare.3833064.v1
title: Introduction to Ecology; A Study on Hair Color and Gender

description: Methods: In order to assess the relationship between hair color and gender, 22 human subjects were surveyed<br>Study site: Lumbers Building 118. Lab Benches. Well air-conditioned room. Data was collected verbally, with individuals represented by a spokesperson for their laboratory group.<br>Hypothesis: Subjects who identified as males are more likely to have darker hair as a means of maintaining a warm scalp.<br>Predictions1) Subjects who identified as female are more likely to have a wider range of hair color2) Subjects who are female are more likely to have red hair3) Subjects who are female are more likely to have non-biological hair colors.<br>Group Members: Andrew Nguyen, Kobina Vijay, Keethana Bala, Abesan Balakumar<br>
DOI: 10.6084/m9.figshare.7808477.v6
title: ABC-6 structures (2-16 layers)

description: 84292 ABC-6 zeolite structures generated by the enumeration of their genomic stacking sequences.<br>
DOI: 10.6084/m9.figshare.22304557.v1
title: Revised supplemental data figure for L-00382-2022

description: Revised supplemental data figure for L-00382-2022
DOI: 10.17632/r57nxxtc62
title: Non-linear eigenvalue problems with GetDP and SLEPc: Eigenmode computations of frequency-dispersive photonic open structures

description: We present a framework to solve non-linear eigenvalue problems suitable for a Finite Element discretization. The implementation is based on the open-source finite element software GetDP and the open-source library SLEPc. As template examples, we propose and compare in detail different ways to address the numerical computation of the electromagnetic modes of frequency-dispersive objects. This is a non-linear eigenvalue problem involving a non-Hermitian operator. A classical finite element formulation is derived for five different solutions and solved using algorithms adapted to the large size of the resulting discrete problem. The proposed solutions are applied to the computation of the dispersion relation of a diffraction grating made of a Drude material. The important numerical consequences linked to the presence of sharp corners and sign-changing coefficients are carefully examined. For each method, the convergence of the eigenvalues with respect to the mesh refinement and the shape function order, as well as computation time and memory requirements are investigated. The open-source template model used to obtain the numerical results is provided. Details of the implementation of polynomial and rational eigenvalue problems in GetDP are given in the appendix.
DOI: 10.17632/zb9ngwk5vs
title: Bathymetrical and hydrological data of newly formed lagoon near retreating Eidembreen glacier in Svalbard, Arctic

description: We present bathymetrical and hydrological data from newly formed lagoon between Eidembreen glacier and Eidembukta bay in Svalbard, European Arctic. Surveys were conducted in 2022 August 21-26th, 2023 August 14-19th and 2024 July 22-24th. The dataset consists of bathymetry data and hydrological data. Bathymetry data was collected using Garmin Echomap UHD 92sv sonar with GT56UHD-TM transducer, additionally, in 2022 shallow depths were measured with a sonar Deeper chirp+2. Hydrological data was collected using Valeport SWiFT SVP probe in 2022 and 2024, while in 2023 a multiparameter probe CTD115M was used. 
Bathymetrical data files consist of coordinates (longitude, latitude in WGS 1984 coordinate system) and depth measurements (in meters). Hydrological data from 2022 and 2024 consists of several parameters: depth profile (m), pressure (decibars), sound velocity (m/s), temperature (degree Celsius), salinity (PSU), density (kg/m3), conductivity (milliSiemens per centimeter), date and time. Hydrological data from 2023 consists of following parameters: pressure (decibars), temperature (degree Celsius), conductivity (milliSiemens per centimeter), oxygen saturation (%), dissolved oxygen concentration (mg/l), pH, photosynthetically active radiation (microeinsteins), turbidity (FTU), salinity (PSU), density (kg/m3), sound velocity (m/s).
The dataset consists of two directories: 1) “Bathymetry”, which includes four excel files “depths_Deeper2022.xlsx”, “depths_Garmin2022.xlsx”, “depths_Garmin2023.xlsx” and “depths_Garmin2024.xlsx”, with indication to sonar used and the year of survey; 2) “Hydrology”, which contains three subfolders “2022”, “2023” and “2024” indicating the year of survey. Each subfolder consists of two excel files with coordinates (contains site names, longitude and latitude in WGS 1984 coordinate system) and hydrological data (contains hydrological data for each site in separate sheet).
Geographic information. Edge coordinates of the the lagoon are: Northernmost point 78°24’19.1’’N / 12°50’33.7’’E, Easternmost point 78°22’10.4’’N / 12°55’44.8’’E, Southernmost point 78°21’13.1’’N / 12°52’34.4’’E, Westernmost point 78°22’30.8’’N / 12°45’26.8’’E.
DOI: 10.6084/m9.figshare.12621947.v2
title: CHAF_v1.zip

description: We present the first comprehensive database of active and potentially-active continental fault in Chile based on existing studies and new mapping at 1:25,000 scale using geologic and geomorphic criteria and digital elevation models derived from TanDEM-X and LiDAR data. The database includes 959 fault strands grouped into 17 fault systems and classified based on activity (78 proved, 592 probable, 288 possible). The database is a contribution to world compilation of active faults with applications in seismic hazards, paleoseismology, landscape evolution processes, geothermal exploration, and in the study of potential feedbacks between continental deformation and the plate-boundary seismic cycle along subduction zones.
DOI: 10.6084/m9.figshare.21431547.v1
title: RDD2022 - The multi-national Road Damage Dataset released through CRDDC'2022

description: Description The Road Damage Dataset, RDD2022, is released as a part of the Crowdsensing-based Road Damage Detection Challenge (CRDDC'2022), an IEEE BigData Cup. It comprises <strong>47,420 road images</strong> from six countries, <strong>Japan, India, the Czech Republic, Norway, the United States, and China. </strong> The images have been annotated with more than <strong>55,000</strong> instances of road damage. Four types of road damage, namely longitudinal cracks, transverse cracks, alligator cracks, and potholes, are captured in the dataset. Usage The annotated dataset is envisioned for developing <strong>deep learning</strong>-based methods to detect and classify road damage <strong>automatically. </strong> The <strong>municipalities and road agencies </strong>may utilize the RDD2022 dataset, and the models trained using RDD2022 for low-cost automatic monitoring of road conditions. Further,<strong> computer vision and machine learning researchers </strong>may use the dataset to benchmark the performance of different algorithms for other image-based applications of the same type (classification, object detection, etc.). For further details, please refer to the CRDDC'2022 resources.
DOI: 10.6084/m9.figshare.23274206.v1
title: Exam data

description: Exam data to detect collaboration
DOI: 10.6084/m9.figshare.23274299.v1
title: GBD of IHD(1990 to 2019)

description: Accurate and comprehensive data on the incidence, mortality, and burden of ischemic heart disease (IHD), as well as the associated risk factors, are essential for informed decision-making in healthcare policy. This study aimed to estimate IHD incidence, deaths, and disability-adjusted life years (DALYs) stratified by country, gender, age group, and sociodemographic status from 1990 to 2019. Through statistical analysis of the global population and IHD data from the GBD database from 1990 to 2019, we analyzed the region, sex, age characteristics, and temporal development of IHD. At the same time, we also included the relevant influencing factors of the sociodemographic index (SDI) and analyzed the incidence of IHD in regions with different SDI levels. Furthermore, we examined the primary risk factors for IHD during the same period and employed statistical models to predict the global IHD incidence through 2044.
DOI: 10.6084/m9.figshare.24317032.v2
title: Studies of Ni-Cr complexation in FLiBe molten salt using machine learning interatomic potentials, Journal of Molecular Liquids, 2024

description: This collection contains a series of input files and data sets related to the article:Studies of Ni-Cr complexation in FLiBe molten salt using machine learning interatomic potentials, Molecular Liquids, 2024
DOI: 10.17632/3cx8g2jc57
title: Data for: Structure—longitudinal sound velocity relationships in glassy anorthite (CaAl2Si2O8) up to 20 GPa: An in situ Raman and Brillouin spectroscopy study

description: This data is the longitudinal sound wave velocity and Brillouin scattering data associated with the article titled, "Structure—longitudinal sound velocity relationships in glassy anorthite (CaAl2Si2O8) up to 20 GPa: An in situ Raman and Brillouin spectroscopy study" in Geochimica et Cosomochimica Acta. It includes two table: Table S1:The Brillouin shift (nVp) values and Table S2: The calculated Vp values based on the in situ high pressure refractive index data of Kuryaeva et al., 2007 (DOI: 10.1134/S001670290703010X).
DOI: 10.17632/b8k5ssg28j
title: Data for: Polyketide derivatives from the sponge associated fungus Aspergillus europaeus with antioxidant and NO inhibitory activities

description: IR, UV, NMR, ESIMS spectra for new compounds
DOI: 10.17632/vr7f5skg5h
title: Oulu benchmarking

description: Benchmarking Oulu with Vaasa, Luke, Eastern Finland and Helsinki
DOI: 10.17632/x4nfrrfd7s
title: Suicide Trends in North India: An Autopsy-Based Retrospective Analysis

description: Suicide Trends in North India: An Autopsy-Based Retrospective Analysis
Data regarding the autopsies conducted in Suicide cases in the Department of Forensic Medicine, Shri Lal Bahadur Shastri Government Medical College and Hospital, Mandi at Nerchowk, Himachal Pradesh, India-175008
DOI: 10.6084/m9.figshare.10006625.v5
title: Genetic interactions derived from high-throughput phenotyping of 7,350 yeast cell cycle mutants

description: This dataset is derived from high-throughput phenotyping of over 7,000 yeast cell cycle mutants on six different media types. Multiple independent biological replicates (average of 12) were created for every possible double mutant combination of 36 cell cycle genes. Those mutants were phenotyped by measuring growth rates over time on six different media types.
DOI: 10.6084/m9.figshare.29135957.v1
title: Employability skills article findings and PRISMA analysis results

description: Employability skills article findings and PRISMA analysis results (Table and Figure)
DOI: 10.6084/m9.figshare.7619297.v1
title: Life table calculations

description: Excel sheet with life table statistic calculations based on the data sets that are part of this project.<br>
DOI: 10.17632/wft9s4w32s
title: DATASET ON OIL DRILLING GRADE CARBOXYMETHYL CELLULOSE FOR RHEOLOGY AND FILTRATION CONTROL IN WATER-BASED DRILLING FLUIDS

description: The dataset details the composition of the drilling fluids considered, includes images of all materials for easy identification in case of replication, and provides raw and analyzed data on the rheological properties of all the drilling fluids considered. It also includes density and pH readings, filtration properties, and results from characterization. Additionally, templates for replication are provided.
DOI: 10.6084/m9.figshare.11288633.v4
title: Genetic interactions derived from high-throughput phenotyping of 6,589 yeast cell cycle mutants

description: Data and scripts used to analyze the phenotypes of 7350 yeast cell-cycle mutants. The mutant collection includes several biological replicate of 630 double mutant combinations. The datasets includes both the results of synthetic lethality screen and growth data used to estimate genetic interactions.
DOI: 10.6084/m9.figshare.28874579.v2
title: Semi structured interview questions (Covid-19 Cases)

description: Until the dawn: everyday experiences of people living with COVID-19 during the pandemic in Thailand
DOI: 10.6084/m9.figshare.7093481.v1
title: AphasiaRecovery

description: normalized fMRI and behavioral data, auditory comprehension fMRI task (event-related design) with normal speech, reversed speech and pseudo-speech presented randomly. For details see manuskript submitted to Brain 2018.
DOI: 10.17632/fjbpwn9mx6
title: Data for: Two Fold Characteristics of Swift Heavy Ion Irradiation on Co3O4/RGO Nanocomposites

description: This work presents a unique role played by swift heavy ion irradiation (SHI) on Co3O4 - reduced graphene oxide (RGO) nanocomposites in modifying its optical, magnetic and surface electronic properties. Scanning electron microscope (SEM) images reveal that these nanocomposites are in the form of decoration of RGO sheets with Co3O4 nanoparticles. On exposure to SHI, there occur delinking of the attached functional groups from RGO thus driving towards its purification. Raman spectra of irradiated samples confirm this result, where, an exponential decrease in the intensity ratio of D and G peaks of RGO with fluence occurs. At the same time, SHI generates extended defects in the form of latent tracks in decorated Co3O4 nanoparticles, thus modifying the magnetic and surface electronic properties. Results obtained from magnetization studies using SQUID magnetometer and surface electronic response from scanning Kelvin probe reveals that a linear relationship could be established between magnetization and work function of the nanocomposite. An estimation for variation of defect-induced damage fraction with fluence is made from measured work function values.
DOI: 10.17632/yhyy8hbjpr
title: Ethical Management of Cutaneous Squamous Cell Carcinoma in Pregnancy: Balancing Maternal Health and Fetal Safety

description: Supplemental Table for JAAD Manuscript: "Ethical Management of Cutaneous Squamous Cell Carcinoma in Pregnancy: Balancing Maternal Health and Fetal Safety."
DOI: 10.25405/data.ncl.8131556.v1
title: Frequency response data in the vicinity of the localised and trapped modes of a stepped fused quartz plate.

description: The data sets are frequency response data obtained by exciting the localised and energy trapped modes of a stepped fused quartz plate using electromagnetic actuation via the Lorentz force. Of particular interest are the degenerate shear horizontal modes as these represent the optimal configuration for resonance based mass detection. <br>The data is in csv format for easy plotting in Microsoft Excel or other similar software. The frequency response data is in terms of complex amplitude response function thus enabling all type of frequency responses plots to be replotted at the reader's convenience and in the form most familiar to them e.g. magnitude (polar), Nyquist etc. The resonant frequencies can be obtained from the frequency response data and are compared with theoretical predictions obtained by a commercial finite element software package (ANSYS). The comparison is tabulated and demonstrates remarkable agreement for the family of localised and trapped modes.<br>The reason for obtaining the data is to confirm the existence of energy trapped degenerate modes and to distinguish them form the localised modes which stem for the finite boundary. <br>The data was transduced electromagnetically and a lock-in amplifier (manufactured by Zurich Instruments) was used the extract the electromagnetic signature of resonance.<br>The device was fabricated by INEX Micotechnology using conventional microfabrication principles. Fused quartz substrates were used as the elastic medium due to inherent high Q-factor and elastic isotropy.