cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1431149
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: General/clinical baseline parameters. This SPSS file contains the general/clinical baseline parameters of the participants of the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431150
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: Baseline immunological parameters. This SPSS file contains the baseline immunological parameters of the participants of the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431152.v1
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: CD38+ HLA-DR+ CD4 and CD8 T cells. This SPSS file contains the percentage of CD38+ HLA-DR+ CD4 and CD8 T cells at various time points during the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431148
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: Annexin-V+ CD4+ and CD8+ T cells. This SPSS file contains the percentage of Annexin-V+ CD4+ and CD8+ T cells at various time points during the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431149.v1
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: General/clinical baseline parameters. This SPSS file contains the general/clinical baseline parameters of the participants of the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431144
title: Alpha-internexin interaction network

description: Alpha-internexin interaction network downloaded from stringdb.
DOI: 10.6084/m9.figshare.1431148.v1
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: Annexin-V+ CD4+ and CD8+ T cells. This SPSS file contains the percentage of Annexin-V+ CD4+ and CD8+ T cells at various time points during the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1431144.v1
title: Alpha-internexin interaction network

description: Alpha-internexin interaction network downloaded from stringdb.
DOI: 10.6084/m9.figshare.1431389.v5
title: Y-chromosome Haplogroup J-M172 subclades update with primary SNPs

description: Combined J2 Phylogeny from almost all available public and DTC sources. Included are ca. 240 informative subclades (pre Middle Age) as well as more recent haplogroups (low-diversity/Middle Age or Clans/Surnames). The phylogeny is available as Tree with primary SNPs (searchable PDF) and Spreadsheet with details for the selected primary SNPs. <br>This data is an output of the constantly updated online J2-M172 Research Tree simplified which is based on the J2-M172_spreadsheet. This citizen science research is done voluntarily by the author with the support of many others in the J2-M172 Haplogroup research and affiliated research. <br>ISOGG J-Haplogroup update submissions are planned to be based on this work and include equivalent SNPs.
DOI: 10.6084/m9.figshare.1430576
title: Weekly data for 2011

description: Weekly data for 2011
DOI: 10.6084/m9.figshare.1430577
title: Weekly data for 2013

description: Weekly data for 2013
DOI: 10.6084/m9.figshare.1430525
title: Weekly data for 2010

description: Weekly data for 2010
DOI: 10.6084/m9.figshare.1430575
title: Weekly data for 2012

description: Weekly data for 2012
DOI: 10.6084/m9.figshare.1430576.v1
title: Weekly data for 2011

description: Weekly data for 2011
DOI: 10.6084/m9.figshare.1430524
title: Weekly data for 2009

description: Weekly data for 2009
DOI: 10.6084/m9.figshare.1430526
title: Weekly data for 2008

description: Weekly data for 2008
DOI: 10.6084/m9.figshare.1430575.v1
title: Weekly data for 2012

description: Weekly data for 2012
DOI: 10.6084/m9.figshare.1430525.v1
title: Weekly data for 2010

description: Weekly data for 2010
DOI: 10.6084/m9.figshare.1430502
title: Weekly data for 2007

description: Weekly data for 2007
DOI: 10.6084/m9.figshare.1430524.v1
title: Weekly data for 2009

description: Weekly data for 2009
DOI: 10.6084/m9.figshare.1430577.v1
title: Weekly data for 2007

description: Weekly data for 2007, in a single .zip file
DOI: 10.6084/m9.figshare.1430465
title: data for Corral et al. PLoS ONE 2015

description: data
DOI: 10.6084/m9.figshare.1430449
title: Analyzing Discourse Communities with Distributional Semantic Models

description: Data for "Analyzing Discourse Communities with Distributional Semantic Models" - To appear in ACM Web Science 2015 (WebSci15) Conference, Oxford, United Kingdom. Format: 1 Tweet or User ID per line (LF) Note: Some data may not be retrievable due to tweet deletions, user suspensions, and accounts that were recently made private.
DOI: 10.6084/m9.figshare.1430096
title: Maraviroc intensification of cART in patients with suboptimal immunological recovery: a 48-week, placebo-controlled randomized trial

description: File: CD4 and CD8 subsets. This SPSS file contains the absolute number of CD4 and CD8 T cell subsets, as well as the percentage of CD31+ in CD4 naive T cells, at various time points during the MIRS trial. Please see the 'variable view' of the SPSS file and the 'methods' section of the paper for more information. We have used SAS software for our analyses.
DOI: 10.6084/m9.figshare.1430093
title: Levels and patterns of genetic variation in an Asian horseshoe crab species, <i>Tachypleus gigas</i> Müller, from the Malay Peninsula

description: Horseshoe crabs are one of the oldest living organisms that still exist today. Given the overexploitation of horseshoe crabs around the world, and the lack of information on their populations, it is crucial that genetic variation studies are done to assess their levels and patterns of genetic variation for continuous monitoring and management of their populations. Here, five populations of the Asian horseshoe crab <i>Tachypleus gigas</i> sampled from along the coasts of the Malay Peninsula were studied using simple-sequence repeat (SSR) and inter-simple-sequence repeat (ISSR) markers. Different results were obtained using the two different types of markers in terms of the levels of genetic variation estimated, but both concurred that most of the genetic variations were distributed at the individual level rather than among populations of the species. Inbreeding was also observed using the SSR data, although the presence of null alleles could have influenced the estimation. Finally, both marker types revealed that <i>T. gigas</i> could have been subjected to the land barrier effect of the Malay Peninsula that causes populations from the Indian Ocean to be genetically differentiated from the populations from the South China Sea.
DOI: 10.6084/m9.figshare.1430078
title: Issue 1, 2015

description: An introduction to systems thinking applied to obesity, by Øyvind Glosvik.
DOI: 10.6084/m9.figshare.1430078.v1
title: Issue 1, 2015

description: An introduction to systems thinking applied to obesity, by Øyvind Glosvik.
DOI: 10.6084/m9.figshare.1430093.v2
title: Levels and patterns of genetic variation in an Asian horseshoe crab species, <i>Tachypleus gigas</i> Müller, from the Malay Peninsula

description: Horseshoe crabs are one of the oldest living organisms that still exist today. Given the overexploitation of horseshoe crabs around the world, and the lack of information on their populations, it is crucial that genetic variation studies are done to assess their levels and patterns of genetic variation for continuous monitoring and management of their populations. Here, five populations of the Asian horseshoe crab <i>Tachypleus gigas</i> sampled from along the coasts of the Malay Peninsula were studied using simple-sequence repeat (SSR) and inter-simple-sequence repeat (ISSR) markers. Different results were obtained using the two different types of markers in terms of the levels of genetic variation estimated, but both concurred that most of the genetic variations were distributed at the individual level rather than among populations of the species. Inbreeding was also observed using the SSR data, although the presence of null alleles could have influenced the estimation. Finally, both marker types revealed that <i>T. gigas</i> could have been subjected to the land barrier effect of the Malay Peninsula that causes populations from the Indian Ocean to be genetically differentiated from the populations from the South China Sea.
DOI: 10.6084/m9.figshare.1430029
title: Bioinformatics notebook for Plot.ly

description: FANTOM5 provides high precision data of thousands of human and mouse samples. The vastness of this data can be overwhelming and operating it locally is challenging. Luckily, there are many tools out there to make our life easier.<br>For creating a small data subset we can work with in this tutorial, I used TET: Fantom 5 Table Extraction tool. I picked a few human samples, mostly brain tissues with a few outliers, like uterus and downloaded a tab-separated file from the website. For more advanced data extraction, it's good to have a look atTET's API. I have picked normalized tpm(tags per million) and annotated data, so we can focus only on processed data for protein coding genes.
DOI: 10.6084/m9.figshare.1430093.v1
title: Levels and patterns of genetic variation in an Asian horseshoe crab species, <i>Tachypleus gigas</i> Müller, from the Malay Peninsula

description: Horseshoe crabs are one of the oldest living organisms that still exist today. Given the overexploitation of horseshoe crabs around the world, and the lack of information on their populations, it is crucial that genetic variation studies are done to assess their levels and patterns of genetic variation for continuous monitoring and management of their populations. Here, five populations of the Asian horseshoe crab <i>Tachypleus gigas</i> sampled from along the coasts of the Malay Peninsula were studied using simple-sequence repeat (SSR) and inter-simple-sequence repeat (ISSR) markers. Different results were obtained using the two different types of markers in terms of the levels of genetic variation estimated, but both concurred that most of the genetic variations were distributed at the individual level rather than among populations of the species. Inbreeding was also observed using the SSR data, although the presence of null alleles could have influenced the estimation. Finally, both marker types revealed that <i>T. gigas</i> could have been subjected to the land barrier effect of the Malay Peninsula that causes populations from the Indian Ocean to be genetically differentiated from the populations from the South China Sea.
DOI: 10.6084/m9.figshare.1430026
title: The Habsburg Customs Statistics (Source NAB, FC, 5748-5805)

description: In <em>Carriers of Growth?</em> Ann Coenen exposes the wide-ranging impact of international trade on economic development in the eighteenth-century Southern Low Countries. The Habsburg Customs Statistics (Source NAB, FC, 5748-5805)
DOI: 10.6084/m9.figshare.1430024
title: Audio-Visual, Visuo-Tactile and Audio-Tactile Correspondences in Preschoolers

description: Interest in crossmodal correspondences has recently seen a renaissance thanks to numerous studies in human adults. Yet, still very little is known about crossmodal correspondences in children, particularly in sensory pairings other than audition and vision. In the current study, we investigated whether 4–5-year-old children match auditory pitch to the spatial motion of visual objects (audio-visual condition). In addition, we investigated whether this correspondence extends to touch, i.e., whether children also match auditory pitch to the spatial motion of touch (audio-tactile condition) and the spatial motion of visual objects to touch (visuo-tactile condition). In two experiments, two different groups of children were asked to indicate which of two stimuli fitted best with a centrally located third stimulus (Experiment 1), or to report whether two presented stimuli fitted together well (Experiment 2). We found sensitivity to the congruency of all of the sensory pairings only in Experiment 2, suggesting that only under specific circumstances can these correspondences be observed. Our results suggest that pitch–height correspondences for audio-visual and audio-tactile combinations may still be weak in preschool children, and speculate that this could be due to immature linguistic and auditory cues that are still developing at age five.
DOI: 10.6084/m9.figshare.1430026.v1
title: The Habsburg Customs Statistics (Source NAB, FC, 5748-5805)

description: In <em>Carriers of Growth?</em> Ann Coenen exposes the wide-ranging impact of international trade on economic development in the eighteenth-century Southern Low Countries. The Habsburg Customs Statistics (Source NAB, FC, 5748-5805)
DOI: 10.6084/m9.figshare.1430020
title: raw data for my acticle in plos one

description: Raw date for Diagnostic Accuracy of CT-guided Transthoracic Needle Biopsy for Solitary Pulmonary Nodules.
DOI: 10.6084/m9.figshare.1430024.v1
title: Audio-Visual, Visuo-Tactile and Audio-Tactile Correspondences in Preschoolers

description: Interest in crossmodal correspondences has recently seen a renaissance thanks to numerous studies in human adults. Yet, still very little is known about crossmodal correspondences in children, particularly in sensory pairings other than audition and vision. In the current study, we investigated whether 4–5-year-old children match auditory pitch to the spatial motion of visual objects (audio-visual condition). In addition, we investigated whether this correspondence extends to touch, i.e., whether children also match auditory pitch to the spatial motion of touch (audio-tactile condition) and the spatial motion of visual objects to touch (visuo-tactile condition). In two experiments, two different groups of children were asked to indicate which of two stimuli fitted best with a centrally located third stimulus (Experiment 1), or to report whether two presented stimuli fitted together well (Experiment 2). We found sensitivity to the congruency of all of the sensory pairings only in Experiment 2, suggesting that only under specific circumstances can these correspondences be observed. Our results suggest that pitch–height correspondences for audio-visual and audio-tactile combinations may still be weak in preschool children, and speculate that this could be due to immature linguistic and auditory cues that are still developing at age five.
DOI: 10.6084/m9.figshare.1430029.v1
title: Bioinformatics notebook for Plot.ly

description: FANTOM5 provides high precision data of thousands of human and mouse samples. The vastness of this data can be overwhelming and operating it locally is challenging. Luckily, there are many tools out there to make our life easier.<br>For creating a small data subset we can work with in this tutorial, I used TET: Fantom 5 Table Extraction tool. I picked a few human samples, mostly brain tissues with a few outliers, like uterus and downloaded a tab-separated file from the website. For more advanced data extraction, it's good to have a look atTET's API. I have picked normalized tpm(tags per million) and annotated data, so we can focus only on processed data for protein coding genes.
DOI: 10.6084/m9.figshare.1430020.v1
title: raw data for my acticle in plos one

description: Raw date for Diagnostic Accuracy of CT-guided Transthoracic Needle Biopsy for Solitary Pulmonary Nodules.
DOI: 10.6084/m9.figshare.1428736
title: Sine Wave IKr Recordings in HEK hERG expression cells

description: A set of whole cell patch clamp recordings in HEK-293 cells overexpressing hERG 1a. The protocols that were used are novel sine wave-based protocols designed to investigate mathematical models of the IKr current. Also included are the matlab and MEX files necessary to reproduce the simulation aspects of the paper.
DOI: 10.6084/m9.figshare.1428746
title: ANC and Stream Temperature Predictions

description: This dataset contains stream water acid neutralizing capacity (ANC) and temperature predictions for southern Appalachian Mountain streams.
DOI: 10.6084/m9.figshare.1428747
title: Tweets from ICSE 2015

description: A sqlite database containing the tweets (#icse15 and #icse2015) collected during the 37th edition of the International Conference on Software Engineering (ICSE2015)
DOI: 10.6084/m9.figshare.1428674
title: QA/QC Analysis Metrics for FDA-CFSAN Pathogen WGS Surveillance

description: QA/QC Analysis metrics from FDA-CFSAN Pathogen WGS Surveillance pipelines. Data is per-file with regards to paired-end or multi-lane data.
DOI: 10.6084/m9.figshare.1428746.v1
title: ANC and Stream Temperature Predictions

description: This dataset contains stream water acid neutralizing capacity (ANC) and temperature predictions for southern Appalachian Mountain streams.
DOI: 10.6084/m9.figshare.1428674.v1
title: QA/QC Analysis Metrics for FDA-CFSAN Pathogen WGS Surveillance

description: QA/QC Analysis metrics from FDA-CFSAN Pathogen WGS Surveillance pipelines. Data is per-file with regards to paired-end or multi-lane data.
DOI: 10.6084/m9.figshare.1428747.v2
title: Tweets from ICSE 2015

description: A sqlite database containing the tweets (#icse15 and #icse2015) collected during the 37th edition of the International Conference on Software Engineering (ICSE2015)
DOI: 10.6084/m9.figshare.1428673
title: Assembly Pipeline Metrics for FDA-CFSAN Pathogen WGS Surveillance

description: Assembly performance metrics for the FDA-CFSAN Pathogen WGS Surveillance Assembly Pipeline, collected since it's inception. Doesn't include organismal data or public accessions, but anything public should be retrievable from it's CFSAN accession number via NCBI.
DOI: 10.6084/m9.figshare.1428747.v1
title: Tweets from ICSE 2015

description: A sqlite database containing the tweets (#icse15 and #icse2015) collected during the 37th edition of the International Conference on Software Engineering (ICSE2015)
DOI: 10.6084/m9.figshare.1428736.v1
title: Sine Wave IKr Recordings in HEK hERG expression cells

description: A set of whole cell patch clamp recordings in HEK-293 cells overexpressing hERG 1a. The protocols that were used are novel sine wave-based protocols designed to investigate mathematical models of the IKr current.
DOI: 10.6084/m9.figshare.1428659
title: COM state spaces

description: This fileset contains files with information related to the state spaces considered in the work presented in J.P. Correia, R. Ocelák, and J. Mašek's "Towards more realistic modeling of linguistic color categorization" (to appear). This includes data points coordinates and (in separate files) prior priobabilities.
DOI: 10.6084/m9.figshare.1428660
title: Digital Poetry 1995-2015: 572 Edges

description: This CSV file contains 572 edges between 27 nodes of critical writing (monographs and Ph.D. dissertations) and 400 nodes of creative works referenced by those 27 nodes, all documented at the ELMCIP KB (http://elmcip.net), in the field of digital poetry, between 1995 and 2015. These edges were exported from the database and imported into Gephi, a network visualization software, during May 2015. The outcomes of this research project were presented at the Digital Literary Studies 2015 Conference in Coimbra, on May 14, and at the TBLR seminar on "Aesthetic Technologies" in NYC, on May 21, 2015.
DOI: 10.6084/m9.figshare.1428661
title: Digital Poetry 1995-2015: 427 Nodes

description: This CSV file contains 27 nodes of critical writing (monographs and Ph.D. dissertations) and 400 nodes of creative works documented at the ELMCIP KB (http://elmcip.net), in the field of digital poetry, between 1995 and 2015. These nodes were exported from the database and imported into Gephi, a network visualization software, during May 2015. The outcomes of this research project were presented at the Digital Literary Studies 2015 Conference in Coimbra, on May 14, and at the TBLR seminar on "Aesthetic Technologies" in NYC, on May 21, 2015.
DOI: 10.6084/m9.figshare.1428736.v2
title: Sine Wave IKr Recordings in HEK hERG expression cells

description: A set of whole cell patch clamp recordings in HEK-293 cells overexpressing hERG 1a. The protocols that were used are novel sine wave-based protocols designed to investigate mathematical models of the IKr current.
DOI: 10.6084/m9.figshare.1428661.v1
title: Digital Poetry 1995-2015: 427 Nodes

description: This CSV file contains 27 nodes of critical writing (monographs and Ph.D. dissertations) and 400 nodes of creative works documented at the ELMCIP KB (http://elmcip.net), in the field of digital poetry, between 1995 and 2015. These nodes were exported from the database and imported into Gephi, a network visualization software, during May 2015. The outcomes of this research project were presented at the Digital Literary Studies 2015 Conference in Coimbra, on May 14, and at the TBLR seminar on "Aesthetic Technologies" in NYC, on May 21, 2015.
DOI: 10.6084/m9.figshare.1428736.v4
title: Sine Wave IKr Recordings in HEK hERG expression cells

description: A set of whole cell patch clamp recordings in HEK-293 cells overexpressing hERG 1a. The protocols that were used are novel sine wave-based protocols designed to investigate mathematical models of the IKr current. Also included are the matlab and MEX files necessary to reproduce the simulation aspects of the paper.
DOI: 10.6084/m9.figshare.1428637
title: mm_cpicta3_gpipe_predictions.gft

description: C. picta gene predictions. Supplementary material to: Transcriptomic responses of the heart and brain to anoxia in the western painted turtle Authors Sarah W. Keenan, Craig A. Hill, Cyriac Kandoth, Leslie T. Buck and Daniel E. Warren PLoS ONE
DOI: 10.6084/m9.figshare.1428652.v1
title: COM model and data analysis scripts

description: This fileset contains scripts used for model implementation, simulation execution, and data processing for the work presented in J.P. Correia, R. Ocelák, and J. Mašek's "Towards more realistic modeling of linguistic color categorization" (to appear). Python script for model implementation and simulation execution is adapted from an another implementation originally by Gerhard Jaeger and later extended by Michael Franke. The code is provided <em>as is</em> to support a deeper understanding of the details involved in the data analysis we carried out. It is not fully organized or documented (it might even be a bit hacky in places), and for that we apologize.
DOI: 10.6084/m9.figshare.1428736.v3
title: Sine Wave IKr Recordings in HEK hERG expression cells

description: A set of whole cell patch clamp recordings in HEK-293 cells overexpressing hERG 1a. The protocols that were used are novel sine wave-based protocols designed to investigate mathematical models of the IKr current.
DOI: 10.6084/m9.figshare.1428637.v1
title: mm_cpicta3_gpipe_predictions.gft

description: C. picta gene predictions. Supplementary material to: Transcriptomic responses of the heart and brain to anoxia in the western painted turtle Authors Sarah W. Keenan, Craig A. Hill, Cyriac Kandoth, Leslie T. Buck and Daniel E. Warren PLoS ONE