cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6632903.v2
title: Medically indicated late preterm delivery and its impact on perinatal morbidity and mortality: a retrospective population-based cohort study

description: <b>Objective:</b> In the last few decades, attention has been focused on morbidity and mortality associated with late preterm delivery (34–36 + 6/7 weeks), accounting for 60–70% of all preterm births. This study is aimed to determine (1) the prevalence of late preterm deliveries (spontaneous and medically indicated) in our population; and (2) the rate of neonatal morbidity and mortality as well as maternal complications associated with the different phenotypes of late preterm deliveries. <b>Study design:</b> This retrospective population-based cohort study, included 96,176 women who had 257,182 deliveries, occurred between 1988 and 2011, allocated into three groups: term (<i>n</i> = 242,286), spontaneous (<i>n</i> = 10,063), and medically indicated (<i>n</i> = 4833) late preterm deliveries. <b>Results:</b> (1) Medically indicated late preterm deliveries were associated with increased maternal morbidity, as well as neonatal morbidity and mortality, in comparison with other study groups (<i>p</i> <b>Conclusions:</b> (1) Medically indicated late preterm deliveries were independently associated with adverse composite neonatal outcome; and (2) to benefit in term of neonatal outcome from the tool of medically indicated late preterm birth, their proportion should be kept below 35% of all late preterm deliveries, while exceeding this threshold increases the risk of neonatal mortality.
DOI: 10.6084/m9.figshare.6632903.v1
title: Medically indicated late preterm delivery and its impact on perinatal morbidity and mortality: a retrospective population-based cohort study

description: <b>Objective:</b> In the last few decades, attention has been focused on morbidity and mortality associated with late preterm delivery (34–36 + 6/7 weeks), accounting for 60–70% of all preterm births. This study is aimed to determine (1) the prevalence of late preterm deliveries (spontaneous and medically indicated) in our population; and (2) the rate of neonatal morbidity and mortality as well as maternal complications associated with the different phenotypes of late preterm deliveries. <b>Study design:</b> This retrospective population-based cohort study, included 96,176 women who had 257,182 deliveries, occurred between 1988 and 2011, allocated into three groups: term (<i>n</i> = 242,286), spontaneous (<i>n</i> = 10,063), and medically indicated (<i>n</i> = 4833) late preterm deliveries. <b>Results:</b> (1) Medically indicated late preterm deliveries were associated with increased maternal morbidity, as well as neonatal morbidity and mortality, in comparison with other study groups (<i>p</i> <b>Conclusions:</b> (1) Medically indicated late preterm deliveries were independently associated with adverse composite neonatal outcome; and (2) to benefit in term of neonatal outcome from the tool of medically indicated late preterm birth, their proportion should be kept below 35% of all late preterm deliveries, while exceeding this threshold increases the risk of neonatal mortality.
DOI: 10.6084/m9.figshare.6632612
title: Figures data of Papers

description: Data files from "A comparative study of regularization method in structure load identification"include fig2,3,4,5,6,8.
DOI: 10.6084/m9.figshare.6632612.v1
title: Figures data of Papers

description: Data files from "A comparative study of regularization method in structure load identification"include fig2,3,4,5,6,8.
DOI: 10.6084/m9.figshare.6632144
title: Raw data from Fitness consequences of threshold trait expression subject to environmental cues

description: Excel spreadsheet.
DOI: 10.6084/m9.figshare.6632144.v1
title: Raw data from Fitness consequences of threshold trait expression subject to environmental cues

description: Excel spreadsheet.
DOI: 10.6084/m9.figshare.6631403
title: Data and scripts for Selection acting on indels and substitutions in protein coding sequences M.Bogusz and S.Whelan

description: Protein coding gene pair data, scripts, alignments, analysis results and simulations
DOI: 10.6084/m9.figshare.6631403.v1
title: Data and scripts for Selection acting on indels and substitutions in protein coding sequences M.Bogusz and S.Whelan

description: Protein coding gene pair data, scripts, alignments, analysis results and simulations
DOI: 10.6084/m9.figshare.6631400
title: Myocardial motion dataset (processed data)

description: processed_data.pkl<br>Processed myocardial motion recordings organized into python data structures. Pkl files can be loaded in python using the pickle package.<br>analysed_data.pklMeasures extracted from the processed data organised into a pandas dataframe and saved in pickle format.<br>analysed_data_R.csvSame data as analysed_data.pkl but exported as .csv for statistical analysis in R.<br>
DOI: 10.6084/m9.figshare.6631400.v1
title: Myocardial motion dataset (processed data)

description: processed_data.pkl<br>Processed myocardial motion recordings organized into python data structures. Pkl files can be loaded in python using the pickle package.<br>analysed_data.pklMeasures extracted from the processed data organised into a pandas dataframe and saved in pickle format.<br>analysed_data_R.csvSame data as analysed_data.pkl but exported as .csv for statistical analysis in R.<br>
DOI: 10.6084/m9.figshare.6631394
title: Supplementary Material for: The Relationship between White Matter and Reading Acquisition, Refinement and Maintenance

description: Reading requires efficient communication between brain regions that are situated all over the cortex. These brain areas are structurally connected by white-matter pathways that develop over the period of reading acquisition. Here, we conducted a cross-sectional study to assess the relationship between white-matter tracts and reading performance across the lifespan. <b><i>Methods:</i></b> Behavioral (reading performance) and neuroimaging (diffusion tensor imaging [DTI]) data were collected from participants aged 3–21 years as a part of the multi-site project called the pediatric imaging neurocognition genetics study. DTI measures (fractional anisotropy [FA], mean diffusivity, radial diffusivity and axial diffusivity) of bilateral dorsal tracts (arcuate fasciculus, superior longitudinal fasciculus, and posterior superior longitudinal fasciculus) and ventral tracts (uncinate fasciculus, inferior fronto-occipital fasciculus, and inferior longitudinal fasciculus) were extracted. Reading performance was calculated as the number of items correctly read (words for older children and letters in the case of young children). Correlational and regression analyses were conducted between the DTI measures and reading scores. <b><i>Results:</i></b> During the early stages of reading acquisition (ages 3–6), the dorsal tracts were positively related to reading performance (as FA goes up, reading performance goes up). For ages 6–10, the dorsal tracts remain positively associated with reading performance and a relationship between ventral tracts and reading performance emerges. From the age of 10 onwards, the dorsal tracts no longer correlate with reading performance, and a brain-behavior relationship in the right ventral tracts begins to shift, whereby higher FA is associated with lower reading performance. In addition to the involvement of left hemispheric tracts, this study revealed the initial engagement of right hemispheric tracts during the early stages of reading acquisition. <b><i>Conclusion:</i></b> We discuss these different associations of white-matter tracts with reading during development in the context of the biological processes model of myelination and pruning.
DOI: 10.6084/m9.figshare.6631394.v1
title: Supplementary Material for: The Relationship between White Matter and Reading Acquisition, Refinement and Maintenance

description: Reading requires efficient communication between brain regions that are situated all over the cortex. These brain areas are structurally connected by white-matter pathways that develop over the period of reading acquisition. Here, we conducted a cross-sectional study to assess the relationship between white-matter tracts and reading performance across the lifespan. <b><i>Methods:</i></b> Behavioral (reading performance) and neuroimaging (diffusion tensor imaging [DTI]) data were collected from participants aged 3–21 years as a part of the multi-site project called the pediatric imaging neurocognition genetics study. DTI measures (fractional anisotropy [FA], mean diffusivity, radial diffusivity and axial diffusivity) of bilateral dorsal tracts (arcuate fasciculus, superior longitudinal fasciculus, and posterior superior longitudinal fasciculus) and ventral tracts (uncinate fasciculus, inferior fronto-occipital fasciculus, and inferior longitudinal fasciculus) were extracted. Reading performance was calculated as the number of items correctly read (words for older children and letters in the case of young children). Correlational and regression analyses were conducted between the DTI measures and reading scores. <b><i>Results:</i></b> During the early stages of reading acquisition (ages 3–6), the dorsal tracts were positively related to reading performance (as FA goes up, reading performance goes up). For ages 6–10, the dorsal tracts remain positively associated with reading performance and a relationship between ventral tracts and reading performance emerges. From the age of 10 onwards, the dorsal tracts no longer correlate with reading performance, and a brain-behavior relationship in the right ventral tracts begins to shift, whereby higher FA is associated with lower reading performance. In addition to the involvement of left hemispheric tracts, this study revealed the initial engagement of right hemispheric tracts during the early stages of reading acquisition. <b><i>Conclusion:</i></b> We discuss these different associations of white-matter tracts with reading during development in the context of the biological processes model of myelination and pruning.
DOI: 10.6084/m9.figshare.6628487
title: Bird calls_Hindes´ Babbler

description: Audiofiles (wav) which were recorded in the field and used for further bioacoustic analyses.<br>
DOI: 10.6084/m9.figshare.6627959
title: Additional file 3: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with hypertension. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6627959.v1
title: Additional file 3: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with hypertension. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6627941
title: Additional file 2: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with coronary artery disease. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.6627941.v1
title: Additional file 2: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with coronary artery disease. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.6627923
title: Additional file 1: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with type 1 diabetes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6627923.v1
title: Additional file 1: of Genetic interaction effects reveal lipid-metabolic and inflammatory pathways underlying common metabolic disease risks

description: List of top-ranked pathways associated with type 1 diabetes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6627770
title: Additional file 20: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: The file contains the raw sequencing data obtained from the founders generated for the Rims1R655H point mutation. (ZIP 21747 kb)
DOI: 10.6084/m9.figshare.6627770.v1
title: Additional file 20: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: The file contains the raw sequencing data obtained from the founders generated for the Rims1R655H point mutation. (ZIP 21747 kb)
DOI: 10.6084/m9.figshare.6627755
title: Additional file 1: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: Table S1. Sequences of reagents used in the study. The table shows the sequences of the oligonucleotides and lssDNA donors, primers and TaqMan assays employed in this study. LoxP sites (for all conditional projects) and point mutations (for Gckr and Rims1 project) are underlined. Sequences added for diagnostic (for all conditional projects except Syt7) and silent mutations (for Gckr and Rims1 project) are shown in italics. For the plasmids, sequences flanked by and including homology arms are shown. The ddPCR reference copy counting assay is labelled with VIC. All other ddPCR copy counting assays are labelled with fluorescein amidite (FAM). Copy counting assays labelled as UNIV ddPCR assays recognize both WT and engineered alleles; MUT ddPCR assays recognize engineered allele only. Table S2. Production of founders for conditional alleles. The table shows the numbers of embryos and animals involved in mutagenesis attempts employing the injection of CRISPR/Cas9 reagents and lssDNA donors. Table S3. Generation of conditional alleles employing different donor types. The table shows the numbers of embryos and animals involved in mutagenesis attempts employing the injection of CRISPR/Cas9 reagents and oligonucleotides, plasmids or lssDNA donors. The results of the analysis of the founders obtained from these attempts are also summarized. Table S4. Generation of a Rims1R655H point mutation. Further genotype screening data for this project are shown in Additional file 18: Figure S16 and Additional file 19: Figure S17. Table S5. Analysis of the Rims1R655H project. The table details the results of screening of five positive F0 animals obtained for the generation of a Rims1R655H point mutation and the subsequent characterization of the F1 animals obtained from mating of these F0 animals to WT mice. Table S6. Nomenclature of new mouse lines established in the course of the study. (XLS 81 kb)
DOI: 10.6084/m9.figshare.6627755.v1
title: Additional file 1: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: Table S1. Sequences of reagents used in the study. The table shows the sequences of the oligonucleotides and lssDNA donors, primers and TaqMan assays employed in this study. LoxP sites (for all conditional projects) and point mutations (for Gckr and Rims1 project) are underlined. Sequences added for diagnostic (for all conditional projects except Syt7) and silent mutations (for Gckr and Rims1 project) are shown in italics. For the plasmids, sequences flanked by and including homology arms are shown. The ddPCR reference copy counting assay is labelled with VIC. All other ddPCR copy counting assays are labelled with fluorescein amidite (FAM). Copy counting assays labelled as UNIV ddPCR assays recognize both WT and engineered alleles; MUT ddPCR assays recognize engineered allele only. Table S2. Production of founders for conditional alleles. The table shows the numbers of embryos and animals involved in mutagenesis attempts employing the injection of CRISPR/Cas9 reagents and lssDNA donors. Table S3. Generation of conditional alleles employing different donor types. The table shows the numbers of embryos and animals involved in mutagenesis attempts employing the injection of CRISPR/Cas9 reagents and oligonucleotides, plasmids or lssDNA donors. The results of the analysis of the founders obtained from these attempts are also summarized. Table S4. Generation of a Rims1R655H point mutation. Further genotype screening data for this project are shown in Additional file 18: Figure S16 and Additional file 19: Figure S17. Table S5. Analysis of the Rims1R655H project. The table details the results of screening of five positive F0 animals obtained for the generation of a Rims1R655H point mutation and the subsequent characterization of the F1 animals obtained from mating of these F0 animals to WT mice. Table S6. Nomenclature of new mouse lines established in the course of the study. (XLS 81 kb)
DOI: 10.6084/m9.figshare.6627686
title: Additional file 16: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: The file contains the raw sequencing data obtained from the founders generated for the GckrP446L point mutation. (ZIP 14449 kb)
DOI: 10.6084/m9.figshare.6627686.v1
title: Additional file 16: of Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

description: The file contains the raw sequencing data obtained from the founders generated for the GckrP446L point mutation. (ZIP 14449 kb)
DOI: 10.6084/m9.figshare.6627605
title: Additional file 1: of Bat Astrovirus in Mozambique

description: Detailed results of Astrovirus detection in samples from Mozambique. (ODS 30 kb)
DOI: 10.6084/m9.figshare.6627605.v1
title: Additional file 1: of Bat Astrovirus in Mozambique

description: Detailed results of Astrovirus detection in samples from Mozambique. (ODS 30 kb)
DOI: 10.6084/m9.figshare.6627590
title: Additional file 9: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S2. Summary of glycoside hydrolase annotations in metazoan genomes. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.6627590.v1
title: Additional file 9: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S2. Summary of glycoside hydrolase annotations in metazoan genomes. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.6627575
title: Additional file 8: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S1. List of accession numbers for species used in this study. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6627575.v1
title: Additional file 8: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S1. List of accession numbers for species used in this study. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6627524
title: Additional file 4: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Data details of metabolites identified in roots of 101.14 and M4 rootstock genotypes. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6627524.v1
title: Additional file 4: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Data details of metabolites identified in roots of 101.14 and M4 rootstock genotypes. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6627518
title: Additional file 3: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Assignment of the functional bin code category of all proteins identified in roots of 101.14 and M4 rootstock genotypes (Table S3A and B) and functional classification of proteins showing significant changes in responses to WS (Table S3C). (XLSX 190 kb)
DOI: 10.6084/m9.figshare.6627518.v1
title: Additional file 3: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Assignment of the functional bin code category of all proteins identified in roots of 101.14 and M4 rootstock genotypes (Table S3A and B) and functional classification of proteins showing significant changes in responses to WS (Table S3C). (XLSX 190 kb)
DOI: 10.6084/m9.figshare.6627503
title: Additional file 2: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Quantification data details of all the proteins identified in roots of 101.14 and M4 rootstock genotypes. (XLSX 226 kb)
DOI: 10.6084/m9.figshare.6627503.v1
title: Additional file 2: of Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

description: Quantification data details of all the proteins identified in roots of 101.14 and M4 rootstock genotypes. (XLSX 226 kb)
DOI: 10.6084/m9.figshare.6627458
title: Additional file 13: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Fasta file of glycoside hydrolase sequences identified from crustacean transcriptomes. (TXT 25708 kb)
DOI: 10.6084/m9.figshare.6627458.v1
title: Additional file 13: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Fasta file of glycoside hydrolase sequences identified from crustacean transcriptomes. (TXT 25708 kb)
DOI: 10.6084/m9.figshare.6627440
title: Additional file 12: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Fasta file of glycoside hydrolase sequences identified from metazoan genomes. (TXT 1687 kb)
DOI: 10.6084/m9.figshare.6627440.v1
title: Additional file 12: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Fasta file of glycoside hydrolase sequences identified from metazoan genomes. (TXT 1687 kb)
DOI: 10.6084/m9.figshare.6627383
title: Additional file 10: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S3. Summary of glycoside hydrolase annotations in crustacean transcriptomes. (XLSX 468 kb)
DOI: 10.6084/m9.figshare.6627383.v1
title: Additional file 10: of Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals

description: Table S3. Summary of glycoside hydrolase annotations in crustacean transcriptomes. (XLSX 468 kb)
DOI: 10.6084/m9.figshare.6627374
title: Additional file 1: of Submucosal hematoma: a new distinctive sign during emergency upper digestive endoscopy for ammonia ingestion

description: All data generated or analyzed during this study are included in the supplementary information files. The collected data were: epidemiological data (age, gender), type of caustic agent (ammonia, volume of the ingested agent, mode of ammonia ingestion), clinical evaluation upon admission (clinical signs of severity, associated oropharyngeal lesions), endoscopic esophago-gastric lesions at first endoscopy (endoscopic lesions according to Zargar classification, presence of submucosal hematoma and its localization), endoscopic follow-up (date, duration and result), therapeutic management (medical, surgical, endoscopic dilation, results of computed tomography). (XLS 70 kb)
DOI: 10.6084/m9.figshare.6627374.v1
title: Additional file 1: of Submucosal hematoma: a new distinctive sign during emergency upper digestive endoscopy for ammonia ingestion

description: All data generated or analyzed during this study are included in the supplementary information files. The collected data were: epidemiological data (age, gender), type of caustic agent (ammonia, volume of the ingested agent, mode of ammonia ingestion), clinical evaluation upon admission (clinical signs of severity, associated oropharyngeal lesions), endoscopic esophago-gastric lesions at first endoscopy (endoscopic lesions according to Zargar classification, presence of submucosal hematoma and its localization), endoscopic follow-up (date, duration and result), therapeutic management (medical, surgical, endoscopic dilation, results of computed tomography). (XLS 70 kb)
DOI: 10.6084/m9.figshare.6627332
title: Additional file 2: of Whole exome sequencing in the rat

description: Table S2. PCR forward and reverse primer pairs for Sanger sequencing. (XLSX 10 kb)