cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8br54
title: Data from: Phenotypic differentiation is associated with divergent sexual selection among closely related barn swallow populations

description: Sexual selection plays a key role in the diversification of numerous
 animal clades and may accelerate trait divergence during speciation.
 However, much of our understanding of this process comes from phylogenetic
 comparative studies, which rely on surrogate measures such as dimorphism
 that may not represent selection in wild populations. In this study, we
 assess sexual selection pressures for multiple male visual signals across
 four barn swallow (Hirundo rustica) populations. Our sample encompassed
 2400 linear km and two described subspecies: European H. r. rustica (in
 the Czech Republic and Romania) and Eastern Mediterranean H. r. transitiva
 (in Israel), as well as a potential area of contact (in Turkey). We
 demonstrate significant phenotypic differentiation in four sexual
 signaling axes, despite very low-level genomic divergence and no
 comparable divergence in an ecological trait. Moreover, the direction of
 phenotypic divergence is consistent with differences in sexual selection
 pressures among subspecies. Thus, H. r. transitiva, which have the darkest
 ventral plumage of any population, experience directional selection for
 darker plumage. Similarly, H. r. rustica, which have the longest tail
 feathers of any population, experience directional selection for elongated
 tail feathers and disruptive selection for ventral plumage saturation.
 These results suggest that sexual selection is the primary driver of
 phenotypic differentiation in this species. Our findings add to growing
 evidence of phenotypic divergence with gene flow. However, to our
 knowledge, this is the first study to relate direct measures of the
 strength and targets of sexual selection to phenotypic divergence among
 closely-related wild populations.
description: Male barn swallow
 phenotypic & reproductive dataData file with maximum
 tail streamer length, right wing length, and tetrahedral color measures
 for 4 ventral patches for male barn swallows from the Czech Republic,
 Romania, Turkey, and Israel. Clutch initiation date is provided for all
 populations but Romania. There are two years of data for the potential
 contact zone in Turkey. Color patch codes: T=throat, R=breast, B=belly,
 and V=vent. Also included are rotated factors summarizing phenotypic
 characters which were used in analyzing divergence in phenotypes and
 selection pressures: [BodyBrightness], [ThroatBrightness], [Saturation],
 and [StreamerLength]. Age is denoted for individuals we could confidently
 assign to a first-year or older age-class (i.e. which we had banded as a
 hatchling or which was an unbanded breeder at a site where we had banded
 all adults the previous year.)fulldata.csv
DOI: 10.5061/dryad.9bc55
title: Data from: Maternal body size influences offspring immune configuration in an oviparous snake

description: Like most ectothermic vertebrates, keelback snakes (Tropidonophis mairii)
 do not exhibit parental care. Thus, offspring must possess an immune
 system capable of dealing with challenges such as pathogens, without
 assistance from an attendant parent. We know very little about immune
 system characteristics of neonatal reptiles, including the magnitude of
 heritability and other maternal influences. To identify sources of
 variation in circulating white blood cell (WBC) concentrations and
 differentials, we examined blood smears from 246 hatchling snakes and
 their field-caught mothers. WBC concentrations were lower in hatchlings
 than in adults, and hatchlings had more basophils and fewer azurophils
 than adults. A hatchling keelback's WBC differential was also
 influenced by its sex and body size. Although hatchling WBC measures
 exhibited negligible heritability, they were strongly influenced by
 maternal body size and parasite infection (but not by maternal body
 condition, relative clutch mass or time in captivity). Larger mothers
 produced offspring with more azurophils and fewer lymphocytes. The
 mechanisms and consequences of WBC variation are currently unknown, but if
 these maternal effects enhance offspring fitness, the impact of maternal
 body size on reproductive success may be greater than expected simply from
 allometric increases in the numbers and sizes of progeny.
description: Brown_Maternal body size
 influences offspring immune configuration defence in an oviparous
 snakeFamily relationships,
 sex, body size, WBC profiles, WBC concentrations and WBC principal
 component #1
DOI: 10.5061/dryad.2b65b
title: Data from: Dispersal of fungi spores by non-specialized flower-visiting birds

description: Birds are important biotic dispersers of a wide range of propagules. Fungi
 spores are mainly dispersed by wind. Nevertheless there are several
 animals known to disperse fungi spores, which might be particularly
 important if spores are delivered to particularly favourable sites i.e.
 directed dispersal. This may be especially important for fungi that
 require specific microsites such as flowers. We sampled birds for the
 presence of fungi spores and pollen grains during one year at two forest
 sites in central Portugal. We found that out of the 894 birds sampled, 131
 individuals from 11 species carried spores from at least 6 morphological
 types, mainly during winter. The great majority of birds found to carry
 fungi spores was also found to carry pollen grains, suggesting that they
 were feeding on flowers which are the main origin of the spores. This
 co-dispersion of pollen and fungi spores suggest that the latter are not
 randomly dispersed on the environment, but are likely to have an increased
 probability of being deposited on flowers propitious to fungi development.
 Our results suggest that directed dispersal of fungi by flower-visiting
 birds might by a common and under-appreciated phenomenon with potentially
 important ecological, biogeographic and even economic outcomes.
description: dryadData used in the
 article. Headings self explanatory
DOI: 10.15468/dl.8m6zgu
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nicotiana sylvestris",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 156 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000957-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.d52df21
title: Data from: Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment

description: We investigated the impacts of the Mount Polley tailings impoundment
 failure on chemical, physical, and microbial properties of substrates
 within the affected watershed, comprised of 70 hectares of riparian
 wetlands and 40 km of stream and lake shore. We established a
 biomonitoring network in October of 2014, two months following the
 disturbance, and evaluated riparian and wetland substrates for microbial
 community composition and function via 16S and full metagenome sequencing.
 A total of 234 samples were collected from substrates at 3 depths and
 1,650,752 sequences were recorded in a geodatabase framework. These data
 revealed a wealth of information regarding watershed-scale distribution of
 microbial community members, as well as community composition, structure,
 and response to disturbance. Substrates associated with the impact zone
 were distinct chemically as indicated by elevated pH, nitrate, and
 sulphate. The microbial community exhibited elevated metabolic capacity
 for selenate and sulfate reduction and an abundance of
 chemolithoautotrophs in the Thiobacillus thiophilus/T. denitrificans/T.
 thioparus clade that may contribute to nitrate attenuation within the
 affected watershed. The most impacted area (a 6km stream connecting two
 lakes) exhibited 30% lower microbial diversity relative to the remaining
 sites. The tailings impoundment failure at Mount Polley Mine has provided
 a unique opportunity to evaluate functional and compositional diversity
 soon after a major catastrophic disturbance to assess metabolic potential
 for ecosystem recovery.
description: Fall 2014 Mount Polley
 MetadataThe attached file
 includes recorded field metrics and laboratory analyses for soil and water
 samples collected following the Mount Polley tailings impoundment failure
 in August 2014. Worksheet descriptions are provided in the attached readme
 file and sample naming conventions are embedded within included
 worksheets.
DOI: 10.5061/dryad.gk23s
title: Data from: The effects of insects, nutrients, and plant invasion on community structure and function above- and belowground

description: Soil nutrient availability, invasive plants, and insect presence can
 directly alter ecosystem structure and function, but less is known about
 how these factors may interact. In this 6-year study in an old-field
 ecosystem, we manipulated insect abundance (reduced and control), the
 propagule pressure of an invasive nitrogen-fixing plant (propagules added
 and control), and soil nutrient availability (nitrogen added, nitrogen
 reduced and control) in a fully crossed, completely randomized plot
 design. We found that nutrient amendment and, occasionally, insect
 abundance interacted with the propagule pressure of an invasive plant to
 alter above- and belowground structure and function at our site. Not
 surprisingly, nutrient amendment had a direct effect on aboveground
 biomass and soil nutrient mineralization. The introduction of invasive
 nitrogen-fixing plant propagules interacted with nutrient amendment and
 insect presence to alter soil bacterial abundance and the activity of the
 microbial community. While the larger-scale, longer-term bulk measurements
 such as biomass production and nutrient mineralization responded to the
 direct effects of our treatments, the shorter-term and dynamic microbial
 communities tended to respond to interactions among our treatments. Our
 results indicate that soil nutrients, invasive plants, and insect
 herbivores determine both above- and belowground responses, but whether
 such effects are independent versus interdependent varies with scale.
description: WRIGHT ET AL.
 MasterData_P16_2009MasterData_P16_2009.xlsx
DOI: 10.5061/dryad.jm227
title: Data from: How weather instead of urbanity measures affects song trait variability in three European passerine bird species

description: Previous studies detected an influence of urban characteristics on song
 traits in passerine birds, that is, song adjustments to ambient noise in
 urban areas. Several studies already described the effect of weather
 conditions on the behavior of birds, but not the effect on song traits. We
 investigate, if song trait variability changes along a continuous urbanity
 gradient in Frankfurt am Main, Germany. We examined, for the first time on
 a larger scale, the influence of weather on song parameters. We made song
 recordings of three common passerine species: the blue and great tit
 (Cyanistes caeruleus (Linnaeus, 1758) and Parus major Linnaeus, 1758) and
 the European blackbird (Turdus merula Linnaeus, 1758). We measured
 different song traits and performed statistical analyses and modeling on a
 variety of variables—among them urbanity and weather parameters.
 Remarkably, we found only few cases of a significant influence of urbanity
 parameters on song traits. The influence of weather parameters (air
 pressure, atmospheric humidity, air and soil temperatures) on song traits
 was highly significant. Birds in Frankfurt face high noise pollution and
 might show different adaptations to high noise levels. The song trait
 variability of the investigated species is affected more by weather
 conditions than by urban characteristics in Frankfurt. However, the three
 species react differently to specific weather parameters. Smaller species
 seem to be more affected by weather than larger species.
description: sonametric
 dataData partly collected in
 the field, partly performed electronically. For abbreviations see Table 1
 and 2 in publication.
DOI: 10.15468/dl.8p7zqs
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthella sprucei",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 298 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007715-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18460281
title: Heterogeneous Structural Variations in M. tuberculosis

description: Supplemental Tables for the iScience manuscript.
DOI: 10.5281/zenodo.18460280
title: Heterogeneous Structural Variations in M. tuberculosis

description: Supplemental Tables for the iScience manuscript.
DOI: 10.15468/dl.7pnuf3
title: Occurrence Download

description: A dataset containing 2548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex otrubae, Carex otrubae, Carex vulpina, Carex vulpina, Carex vulpina, Carex vulpina, Carex vulpina, Carex vulpinaris, Carex cuprina, Carex cuprina, Carex cuprina)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 2548 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007717-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yv8xqg
title: Occurrence Download

description: A dataset containing 6985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carlina biebersteinii, Carlina biebersteinii, Carlina vulgaris, Carlina vulgaris)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 6985 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007719-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qdeyy
title: Occurrence Download

description: A dataset containing 2706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aciotis purpurascens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2706 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007720-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6duffd
title: Occurrence Download

description: A dataset containing 33747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carlina acaulis, Carlina acaulis, Carlina acaulis)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 33747 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007718-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xub7g4
title: Occurrence Download

description: A dataset containing 17481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carum carvi)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 17481 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007721-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4gg9q
title: Occurrence Download

description: A dataset containing 11997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurea montana, Centaurea montana, Centaurea montana, Centaurea montana, Cyanus montanus, Cyanus montanus)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 11997 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007723-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3zmyd
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Bothrocophias microphthalmus [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 84 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007724-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ygupj
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acisanthera hedyotoidea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007725-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14711795
title: Market Prices of Commodities in South Tangerang
DOI: 10.5281/zenodo.17880437
title: A highly resolved integrated single-cell atlas of HPV-negative Head and Neck Cancer

description: A single cell transcriptomic atlas of HPV-negative Head and Neck Squamous Carcinomas.

The atlas is a Seurat (v 4.1.0) object stored as a .rds file, which can be loaded in R.

The data can be loaded into R as follows:

atlas <- readRDS('FullHNSCCAtlas.rds')

The immune and nonimmune compartments can be separated as follows:

immune <- subset(atlas, cells = rownames(atlas@meta.data[atlas@meta.data$Compartment == "Immune",]))immune[["umap"]]@cell.embeddings <- as.matrix(immune@meta.data[,c("CompartmentUMAP1_Coordinates", "CompartmentUMAP2_Coordinates")])colnames(x = immune[["umap"]]@cell.embeddings) <- paste0("UMAP_", 1:2)

nonimmune <- subset(atlas, cells = rownames(atlas@meta.data[atlas@meta.data$Compartment == "nonImmune",]))nonimmune[["umap"]]@cell.embeddings <- as.matrix(nonimmune@meta.data[,c("CompartmentUMAP1_Coordinates", "CompartmentUMAP2_Coordinates")])colnames(x = nonimmune[["umap"]]@cell.embeddings) <- paste0("UMAP_", 1:2)
DOI: 10.5281/zenodo.14334994
title: A highly resolved integrated single-cell atlas of HPV-negative Head and Neck Cancer

description: A single cell transcriptomic atlas of HPV-negative Head and Neck Squamous Carcinomas.

The atlas is a Seurat (v 4.1.0) object stored as a .rds file, which can be loaded in R.

The data can be loaded into R as follows:

atlas <- readRDS('FullHNSCCAtlas.rds')

The immune and nonimmune compartments can be separated as follows:

immune <- subset(atlas, cells = rownames(atlas@meta.data[atlas@meta.data$Compartment == "Immune",]))immune[["umap"]]@cell.embeddings <- as.matrix(immune@meta.data[,c("CompartmentUMAP1_Coordinates", "CompartmentUMAP2_Coordinates")])colnames(x = immune[["umap"]]@cell.embeddings) <- paste0("UMAP_", 1:2)

nonimmune <- subset(atlas, cells = rownames(atlas@meta.data[atlas@meta.data$Compartment == "nonImmune",]))nonimmune[["umap"]]@cell.embeddings <- as.matrix(nonimmune@meta.data[,c("CompartmentUMAP1_Coordinates", "CompartmentUMAP2_Coordinates")])colnames(x = nonimmune[["umap"]]@cell.embeddings) <- paste0("UMAP_", 1:2)
DOI: 10.15468/dl.bbq7jp
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurea nigra, Centaurea nigra, Centaurea nigra, Centaurea nigra)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 518 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007726-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/ae08ef9f01d8c5509a31eff749cefbd9
title: Harvard Forest Climate Data since 1964

description: This dataset provides daily minimum, maximum, and mean air temperature and 24-hour precipitation data from Harvard Forest for long-term climate studies. It combines measurements from the original manual weather station (Shaler Met Station, 1964-2002, 42.53167 N, 72.18937 W, dataset HF000) with measurements from the current automated weather station (Fisher Met Station, since 2001, 42.53311 N, 72.18968 W, dataset HF001). Gaps in the Shaler data were filled using data from nearby stations. Data from a 12-month period when both stations were operational were used to adjust the Shaler data to account for differences in microclimate at the two sites. This dataset is updated annually.
DOI: 10.5281/zenodo.18461330
title: Supplemental Tables 2-7,9 for the iScience publication

description: Heterogeneous Structural Variations in M. tuberculosis
DOI: 10.5281/zenodo.18461329
title: Supplemental Tables 2-7,9 for the iScience publication

description: Heterogeneous Structural Variations in M. tuberculosis
DOI: 10.15468/dl.r487tz
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurea nigrescens, Centaurea nigrescens, Centaurea nigrescens)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 81 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007727-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.