cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30875714.v1
title: LKCC hydrogel

description: A novel sequential drug delivery system for infected wound healing
DOI: 10.5281/zenodo.17918106
title: Cryptic leukemia antigens share homology with microbial epitopes and stimulate T-cell responses in healthy donors

description: The dataset contains processed T-cell receptor repertoire sequencing data accompanying the manuscript:

"Cryptic leukemia antigens share homology with microbial epitopes and stimulate T-cell responses in healthy donors" by Rulleau et al. 

DOI: https://doi.org/10.64898/2025.12.01.691479

 

Experimental details: TCR β-chain repertoire profiling. Bulk TCR repertoire profiling was performed from sorted multimer-positive and -negative CD8+ T cell RNA isolated as above using next-generation sequencing (NGS) targeting the hypervariable CDR3 of TCRβ. TCRβ amplicon libraries were prepared from 25 ng total RNA with the Oncomine TCR Beta-SR Assay for RNA (Thermo Fisher Scientific). The TCRβ libraries obtained were quantified on the ViiA 7 real-time PCR system with the Ion Library TaqMan Quantitation Kit (Thermo Fisher Scientific). NGS was completed on the Ion S5 semiconductor platform using an Ion 540 chip prepared with the Ion Chef System (all from Thermo Fisher Scientific). TCRβ repertoire analysis was completed using the Ion Reporter software (Thermo Fisher Scientific) and Immunarch package (R software).

5'RACE PCR and alpha/beta TCR chain sequencing. Previously extracted RNA was used to amplify and capture the integrity of the V(D)J variable regions of the α and β chains of TCRs contained in the peptide-specific CD8 T cell repertoire. For this purpose, rapid amplification of complementary DNA ends by polymerase chain reaction (5' RACE PCR) was performed using the SMARTer® Human TCR α/β Profiling Kit v2 (Takara Bio). Amplicons were then purified and size selected using solid phase immobilization beads (NucleoMag beads). Next-generation sequencing was performed at the Institute for Research in Immunology and Cancer (IRIC) using the Illumina Miseq instrument. The Miseq 600-cycle kit was used to cover the integrity of the VDJ regions. Sequences were then pre-processed and analyzed using MIXCR and Immune eProfiler software (Takara Bio). TCR repertoire diversity was analyzed using the Immunarch package, R version 4.1.2 and R studio version 2022.02.1+461. In addition, based on the annotations of the V and J rearrangements and the obtained CDR3 sequence, the complete TCR sequence of the most abundant clonotypes was determined using the Stitchr package.
DOI: 10.5281/zenodo.17918107
title: Cryptic leukemia antigens share homology with microbial epitopes and stimulate T-cell responses in healthy donors

description: The dataset contains processed T-cell receptor repertoire sequencing data accompanying the manuscript:

"Cryptic leukemia antigens share homology with microbial epitopes and stimulate T-cell responses in healthy donors" by Rulleau et al. 

DOI: https://doi.org/10.64898/2025.12.01.691479

 

Experimental details: TCR β-chain repertoire profiling. Bulk TCR repertoire profiling was performed from sorted multimer-positive and -negative CD8+ T cell RNA isolated as above using next-generation sequencing (NGS) targeting the hypervariable CDR3 of TCRβ. TCRβ amplicon libraries were prepared from 25 ng total RNA with the Oncomine TCR Beta-SR Assay for RNA (Thermo Fisher Scientific). The TCRβ libraries obtained were quantified on the ViiA 7 real-time PCR system with the Ion Library TaqMan Quantitation Kit (Thermo Fisher Scientific). NGS was completed on the Ion S5 semiconductor platform using an Ion 540 chip prepared with the Ion Chef System (all from Thermo Fisher Scientific). TCRβ repertoire analysis was completed using the Ion Reporter software (Thermo Fisher Scientific) and Immunarch package (R software).

5'RACE PCR and alpha/beta TCR chain sequencing. Previously extracted RNA was used to amplify and capture the integrity of the V(D)J variable regions of the α and β chains of TCRs contained in the peptide-specific CD8 T cell repertoire. For this purpose, rapid amplification of complementary DNA ends by polymerase chain reaction (5' RACE PCR) was performed using the SMARTer® Human TCR α/β Profiling Kit v2 (Takara Bio). Amplicons were then purified and size selected using solid phase immobilization beads (NucleoMag beads). Next-generation sequencing was performed at the Institute for Research in Immunology and Cancer (IRIC) using the Illumina Miseq instrument. The Miseq 600-cycle kit was used to cover the integrity of the VDJ regions. Sequences were then pre-processed and analyzed using MIXCR and Immune eProfiler software (Takara Bio). TCR repertoire diversity was analyzed using the Immunarch package, R version 4.1.2 and R studio version 2022.02.1+461. In addition, based on the annotations of the V and J rearrangements and the obtained CDR3 sequence, the complete TCR sequence of the most abundant clonotypes was determined using the Stitchr package.
DOI: 10.15468/dl.bjn6x2
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.24603 29.12077,121.24677 29.12077,121.24677 30.8882,119.24603 30.8882,119.24603 29.12077))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sciuridae, Leporidae)"
 ]
}

 The dataset includes 248 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050426-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30849311
title: <b>Plant diversity–mediated variation in root exudates regulates soil nitrogen transformations</b>

description: In pot and microcosm experiments, we investigated how root exudates mediate the effects of plant diversity on nitrogen cycling processes.
DOI: 10.6084/m9.figshare.30849311.v1
title: <b>Plant diversity–mediated variation in root exudates regulates soil nitrogen transformations</b>

description: In pot and microcosm experiments, we investigated how root exudates mediate the effects of plant diversity on nitrogen cycling processes.
DOI: 10.15468/dl.qy9aca
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhodnius neglectus"
 ]
}

 The dataset includes 521 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050428-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17918180
title: DAO Analyzer dataset

description: DAO-Analyzer's dataset.


Explore data from Decentralized Autonomous Organizations deployed on the DAOstack, DAOhaus and Aragon platforms.
description: DAO-Analyzer is created under the umbrella of multiple research projects:



Chain Community, funded by the Spanish Ministry of Science and Innovation (RTI2018‐096820‐A‐I00) and led by Javier Arroyo and Samer Hassan

P2P Models, funded by the European Research Council (ERC-2017-STG 625 grant no.: 75920), led by Samer Hassan.

DAOapplications, funded by the Spanish Ministry of Science and Innovation (PID2021-127956OB-I00) and led by Javier Arroyo, Samer Hassan and maria Cruz Valiente
DOI: 10.15468/dl.mzh4md
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-98.97658 -24.87096,-21.66700 -24.87096,-21.66700 6.08478,-98.97658 6.08478,-98.97658 -24.87096))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca"
 ]
}

 The dataset includes 119 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050429-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14135464
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.9b65kx
title: Occurrence Download

description: A dataset containing 765356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-110.706674 31.527251, -110.734340 31.564729, -110.782386 31.564729, -110.754707 31.527251, -110.706674 31.527251))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 765356 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050419-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqp6z5
title: Occurrence Download

description: A dataset containing 11310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tremarctos ornatus"
 ]
}

 The dataset includes 11310 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050433-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gajkjd
title: Occurrence Download

description: A dataset containing 812029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Setophaga caerulescens)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 812029 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050422-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxw2z5
title: Occurrence Download

description: A dataset containing 7740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-110.681498 31.589858, -110.710142 31.628571, -110.759779 31.628571, -110.731123 31.589858, -110.681498 31.589858))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 7740 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050434-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53952s
title: Occurrence Download

description: A dataset containing 12230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-110.645482 31.745062, -110.669310 31.777085, -110.710385 31.777085, -110.686548 31.745062, -110.645482 31.745062))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 12230 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050436-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30068398
title: meta_raw_data.xlsx

description: A global dataset from 106 studies (6,195 paired observations) to investigate rhizosphere effects on soil N transformations and nitrous oxide (N<sub>2</sub>O) emissions at the global scale.
DOI: 10.6084/m9.figshare.30068398.v1
title: meta_raw_data.xlsx

description: A global dataset from 106 studies (6,195 paired observations) to investigate rhizosphere effects on soil N transformations and nitrous oxide (N<sub>2</sub>O) emissions at the global scale.
DOI: 10.6084/m9.figshare.30875792
title: Novel Ecotypes of the cyanobacteria <i>Microseria wollei</i> and <i>Phormidium species </i>mats and associated microbial communities from the Chesapeake Bay Dataset

description: This folder contains the 16S rRNA ASV and <i>nifH </i>ASV data for Novel Ecotypes of the cyanobacteria <i>Microseria wollei</i> and <i>Phormidium species </i>mats and associated microbial communities from the Chesapeake Bay
DOI: 10.6084/m9.figshare.30875792.v1
title: Novel Ecotypes of the cyanobacteria <i>Microseria wollei</i> and <i>Phormidium species </i>mats and associated microbial communities from the Chesapeake Bay Dataset

description: This folder contains the 16S rRNA ASV and <i>nifH </i>ASV data for Novel Ecotypes of the cyanobacteria <i>Microseria wollei</i> and <i>Phormidium species </i>mats and associated microbial communities from the Chesapeake Bay
DOI: 10.15468/dl.r92wm7
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "TaxonKey is Salvinia molesta",
 "Year 2000-2025"
 ]
}

 The dataset includes 86 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050437-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.turp2c
title: Occurrence Download

description: A dataset containing 1509351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 34.085278",
 "DecimalLatitude is less than or equal to 39.085278",
 "DecimalLongitude is greater than or equal to 135.0",
 "DecimalLongitude is less than or equal to 140.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1509351 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050427-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4dqqy
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-111.436023 31.740049, -111.465216 31.779004, -111.515183 31.779004, -111.485977 31.740049, -111.436023 31.740049))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 444 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050438-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17918173
title: Synergistic GPM Satellite and Buoy Match-up Datasets for Maximum Wave Height Retrieval (2016–2021)

description: This dataset contains two comma-separated values (CSV) files that provide the core match-up records used to develop and validate a novel dynamic correction method for retrieving ocean maximum wave height (MWH) from synergistic Global Precipitation Measurement (GPM) satellite observations.
DOI: 10.5281/zenodo.17918127
title: Passive acoustic monitoring reveals surprising patterns of avian community antipredator behavior at a regional scale

description: The purpose of this study was to investigate how birds in the Sierra Nevada vocally respond to goshawk calls. The data were collected as part of a long-term passive acoustic monitoring project originally designed to monitor Spotted Owls (see Kelly et al. 2023, Ecological Indicators 154:110851).

Recordings were collected with Swift One autonomous recording units deployed in mixed conifer forest across 25,000 km2 of the Western slope of the Sierra Nevada. The present study only used audio collected in 2021 between the hours of 4:00-10:00 and 18:00-21:00. Calls were detected and identified to species using the artificial neural network BirdNET. The present data set consists of 5 .csv files with data and 1 .R file with code used to analyze those data.
DOI: 10.5281/zenodo.15238145
title: Passive acoustic monitoring reveals surprising patterns of avian community antipredator behavior at a regional scale

description: The purpose of this study was to investigate how birds in the Sierra Nevada vocally respond to goshawk calls. The data were collected as part of a long-term passive acoustic monitoring project originally designed to monitor Spotted Owls (see Kelly et al. 2023, Ecological Indicators 154:110851).

Recordings were collected with Swift One autonomous recording units deployed in mixed conifer forest across 25,000 km2 of the Western slope of the Sierra Nevada. The present study only used audio collected in 2021 between the hours of 4:00-10:00 and 18:00-21:00. Calls were detected and identified to species using the artificial neural network BirdNET. The present data set consists of 5 .csv files with data and 1 .R file with code used to analyze those data.
DOI: 10.15468/dl.8hwncj
title: Occurrence Download

description: A dataset containing 963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-110.297064 31.604281, -110.325149 31.642351, -110.373964 31.642351, -110.345866 31.604281, -110.297064 31.604281))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 963 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mevk9t
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Ahtiana aurescens"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050440-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc5rf3f
title: CCDC 171464: Experimental Crystal Structure Determination

description: Related Article: S.B.Clendenning, B.Gehrhus, P.B.Hitchcock, D.F.Moser, J.F.Nixon, R.West|2002|J.Chem.Soc.,Dalton Trans.||484|doi:10.1039/b108020m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5rf2d
title: CCDC 171463: Experimental Crystal Structure Determination

description: Related Article: S.B.Clendenning, B.Gehrhus, P.B.Hitchcock, D.F.Moser, J.F.Nixon, R.West|2002|J.Chem.Soc.,Dalton Trans.||484|doi:10.1039/b108020m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5rf4g
title: CCDC 171465: Experimental Crystal Structure Determination

description: Related Article: S.B.Clendenning, B.Gehrhus, P.B.Hitchcock, D.F.Moser, J.F.Nixon, R.West|2002|J.Chem.Soc.,Dalton Trans.||484|doi:10.1039/b108020m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5rf5h
title: CCDC 171466: Experimental Crystal Structure Determination

description: Related Article: S.B.Clendenning, B.Gehrhus, P.B.Hitchcock, D.F.Moser, J.F.Nixon, R.West|2002|J.Chem.Soc.,Dalton Trans.||484|doi:10.1039/b108020m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.jj6thb
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-124.22356 -43.59049,53.05583 -43.59049,53.05583 27.39444,-124.22356 27.39444,-124.22356 -43.59049))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tapirus"
 ]
}

 The dataset includes 224 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050441-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29925824.v1
title: An integrated platform for <b>hierarchical </b>traffic control with <b>city-scale high-resolution </b>data

description: We present comprehensive traffic datasets and a large-scale simulation platform for hierarchical traffic control. The datasets cover five cities, among which the Xuancheng dataset provides a large urban network with long-term historical trips and high-frequency complete trip paths. The platform offers a modular hierarchical control architecture that coordinates actions across vehicle control, signal control, and perimeter control. It also provides a multidimensional set of traffic flow–based metrics for rigorous evaluation.
DOI: 10.15468/dl.b9f7ms
title: Occurrence Download

description: A dataset containing 2994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-110.168950 31.341295, -110.196560 31.379158, -110.245076 31.379158, -110.217453 31.341295, -110.168950 31.341295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2994 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050442-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17519908
title: Dataset of Controlled gold-catalyzed 5-exo-dig cyclization of 3-sulfur-substituted 1,3-dien-5-ynes for synthesizing fulvenes and the in situ reaction with indoles

description: Densely substituted fulvenes have been synthesized from 1,3-dien-5-ynes by gold-catalyzed 5-exo-dig cyclization, determined by the S-substituent. In addition, these fulvenes interact with the gold catalyst, forming fulvenium intermediates that react with indoles in a one-pot two-step protocol to synthesize 3-(alkylidene-cyclopent-2-en-1-yl)-1H-indoles, by the cooperative action of gold and Brønsted acid catalysts