cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/36mjr8r5c3.1
title: The proteome of large or small extracellular vesicles in pig seminal plasma differs and defines sources and biological functions

description: Seminal plasma contains many and morphologically heterogeneous extracellular vesicles (sEVs) which, released by cells of the testis, epididymis and accessory sex glands, are involved in male and female reproductive processes. The goal of this study was to describe the proteome of porcine sEVs isolated by a size exclusion chromatography (SEC)-based procedure and size-classed as small (S-EVs) or large (L-EVs). The sEV-subsets were characterized for their total protein concentration, morphology, size distribution, EV-specific protein markers and purity. A total of 988 proteins were identified by LC-MS/MS and 737 of them were quantified by SWATH in S-EVs, L-EVs and EVs-free samples. The differential expression analysis revealed 197 differentially abundant proteins between both EV-subsets, and 37 and 199 between S-EVs and L-EVs vs EVs-free samples, respectively. The gene ontology (GO) enrichment analysis of differentially abundant proteins suggested, by the type of protein detected, that S-EVs would be released mainly through an apocrine blebbing pathway and be involved in modulating the immune environment of the female reproductive tract as well as during sperm-oocyte interaction. In contrast, the protein types detected might imply L-EVs are released by fusion of multivesicular bodies with the plasma membrane and would be involved in sperm physiological processes, such as capacitation and avoidance of oxidative stress.  In conclusion, this study provides a procedure capable of isolating of subsets of EVs from pig seminal plasma with a high degree of purity and shows differences in the proteomic profile between EV-subsets, suggesting different sources and biological functions.
DOI: 10.17632/kwkfh294fr.2
title: Repository of original figures

description: Capsicum annuum (Bell pepper cv. California Wonder) and Capsicum chinense (Habanero pepper) plants were infected with Tomato brown rugose fruit virus (ToBRFV). In this repository, we showed some results. First,  symptom development was compared between mock-inoculated and infected plants. Then, we performed droplet digital PCR (ddPCR) to quantify and compare the number of viral copies in systemic leaf samples.
DOI: 10.17632/m25mtx28kr.1
title: Sarasalai Bird Abundance Data

description: This data set includes the Sarasalai Brid Abundance data collected in 2021 for nine months.
DOI: 10.17632/gc634d2w2g.1
title: Data Repository

description: Capsicum annuum (Bell pepper cv. California Wonder) and Capsicum chinense (Habanero pepper) plants were infected with Tomato brown rugose fruit virus (ToBRFV). In this repository, we showed some results. First,  symptom development was compared between mock-inoculated and infected plants. Then, we performed droplet digital PCR (ddPCR) to quantify and compare the number of viral copies in systemic leaf samples.
DOI: 10.5517/ccdc.csd.cc21yvwr
title: CCDC 1905535: Experimental Crystal Structure Determination

description: Related Article: Shaun Millard, Jenny W. Fothergill, Zoe Anderson, Eric C. Brown, Matthew D. King, Adam C. Colson|2019|Inorg.Chem.|58|8130|doi:10.1021/acs.inorgchem.9b00917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21yvxs
title: CCDC 1905536: Experimental Crystal Structure Determination

description: Related Article: Shaun Millard, Jenny W. Fothergill, Zoe Anderson, Eric C. Brown, Matthew D. King, Adam C. Colson|2019|Inorg.Chem.|58|8130|doi:10.1021/acs.inorgchem.9b00917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21yvyt
title: CCDC 1905537: Experimental Crystal Structure Determination

description: Related Article: Shaun Millard, Jenny W. Fothergill, Zoe Anderson, Eric C. Brown, Matthew D. King, Adam C. Colson|2019|Inorg.Chem.|58|8130|doi:10.1021/acs.inorgchem.9b00917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21znqf
title: CCDC 1906305: Experimental Crystal Structure Determination

description: Related Article: Cuiying Huang, Tao Chen, Zhangyuan Yan, Huixian Guo, Xiaobei Hou, Lasheng Jiang, Yuhua Long|2019|Fitoterapia|137|104246|doi:10.1016/j.fitote.2019.104246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2268sc
title: CCDC 1912662: Experimental Crystal Structure Determination

description: Related Article: Qing-Xu Wang, Zhong-Cheng Guo, Yin Qin, Xin Wang, Gang Li|2021|Inorg.Chem.|60|19278|doi:10.1021/acs.inorgchem.1c03093
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23370h
title: CCDC 1939515: Experimental Crystal Structure Determination

description: Related Article: Huici Shan, Anjie Liu, Yan Lv, Xueyan Wu, Yongdong Ma, Xiaoping Jin, Jixi Guo|2020|Dyes Pigm.|180|108400|doi:10.1016/j.dyepig.2020.108400
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2355vb
title: CCDC 1941401: Experimental Crystal Structure Determination

description: Related Article: Kai Xu,  Jianxun Ye,  Hao Liu,  Jiefeng Shen,  Delong Liu,  Wanbin Zhang|2020|Adv.Synth.Catal.|362|2059|doi:10.1002/adsc.202000151
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23jjy4
title: CCDC 1952316: Experimental Crystal Structure Determination

description: Related Article: Subramani Kumaran,  Kanniyappan Parthasarathy|2020|Eur.J.Org.Chem.|2020|866|doi:10.1002/ejoc.201901763
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23dmx2
title: CCDC 1948564: Experimental Crystal Structure Determination

description: Related Article: Subramani Kumaran,  Kanniyappan Parthasarathy|2020|Eur.J.Org.Chem.|2020|866|doi:10.1002/ejoc.201901763
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23mcy2
title: CCDC 1955044: Experimental Crystal Structure Determination

description: Related Article: Sampath Thavaselvan, Kanniyappan Parthasarathy|2020|Org.Lett.|22|3810|doi:10.1021/acs.orglett.0c01055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23nmr5
title: CCDC 1956247: Experimental Crystal Structure Determination

description: Related Article: Yu Xin, Na Zhang, Xiao Xin Han, Bing Li, Ying Sun, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2020|J.Mol.Struct.|1205|127656|doi:10.1016/j.molstruc.2019.127656
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23nmt7
title: CCDC 1956249: Experimental Crystal Structure Determination

description: Related Article: Yu Xin, Na Zhang, Xiao Xin Han, Bing Li, Ying Sun, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2020|J.Mol.Struct.|1205|127656|doi:10.1016/j.molstruc.2019.127656
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23nn0g
title: CCDC 1956255: Experimental Crystal Structure Determination

description: Related Article: Yu Xin, Na Zhang, Xiao Xin Han, Bing Li, Ying Sun, Li Xian Sun, Feng Ying Bai, Yong Heng Xing|2020|J.Mol.Struct.|1205|127656|doi:10.1016/j.molstruc.2019.127656
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23sl8s
title: CCDC 1960045: Experimental Crystal Structure Determination

description: Related Article: Zhibin Ni, Chengli Mou, Xun Zhu, Puying Qi, Song Yang, Yonggui Robin Chi, Zhichao Jin|2020|Eur.J.Org.Chem.|2020|492|doi:10.1002/ejoc.201901773
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23sl9t
title: CCDC 1960046: Experimental Crystal Structure Determination

description: Related Article: Zhibin Ni, Chengli Mou, Xun Zhu, Puying Qi, Song Yang, Yonggui Robin Chi, Zhichao Jin|2020|Eur.J.Org.Chem.|2020|492|doi:10.1002/ejoc.201901773
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23tj0h
title: CCDC 1960936: Experimental Crystal Structure Determination

description: Related Article: Ruiping Han, Yue Ding, Xueke Jin, Er-Qing Li|2020|Org.Biomol.Chem.|18|646|doi:10.1039/C9OB02633A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc248flg
title: CCDC 1974315: Experimental Crystal Structure Determination

description: Related Article: Bunta Watanabe, Katsunori Makino, Masaharu Mizutani, Hikaru Takaya|2021|Tetrahedron|91|132194|doi:10.1016/j.tet.2021.132194
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc248tkt
title: CCDC 1974686: Experimental Crystal Structure Determination

description: Related Article: Bunta Watanabe, Katsunori Makino, Masaharu Mizutani, Hikaru Takaya|2021|Tetrahedron|91|132194|doi:10.1016/j.tet.2021.132194
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc248tlv
title: CCDC 1974687: Experimental Crystal Structure Determination

description: Related Article: Bunta Watanabe, Katsunori Makino, Masaharu Mizutani, Hikaru Takaya|2021|Tetrahedron|91|132194|doi:10.1016/j.tet.2021.132194
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24bzbt
title: CCDC 1976756: Experimental Crystal Structure Determination

description: Related Article: Qi Xu, Chu Wang, Dan Zheng, Jing He, Ying Wang, Xuebo Chen, Hua Jiang|2021|J.Org.Chem.|86|13990|doi:10.1021/acs.joc.0c03065
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.7399205
title: Novel sub-cellular localizations and intra-molecular interactions may define new functions of Mixed Lineage Leukemia protein

description: Mixed-lineage leukemia (MLL) protein is the best-characterized member of SET family of histone 3 lysine 4 methyltransferase, known for its transcriptional-activation role during development. <i>mll</i> gene rearrangements cause multiple kinds of aggressive leukemia in both children and adults. An important ‘first’ step in understanding the role of MLL in leukemogenesis would be to identify its localization throughout the cell cycle. In order to fully understand the breath of MLL functions in proliferating cells, we have analyzed its sub-cellular localization during the cell cycle. Our results show that MLL localizes to nucleolus and centrosome in interphase. During mitosis, it localizes to centrosomes and midbody in addition to previously reported spindle apparatus. Our results show that MLL<sub>N</sub> is required to translocate MLL<sub>C</sub> to the nucleolus. These finding suggest functional roles for MLL in nucleolus and mitosis. We also show how MLL-fusion proteins (MLL-FPs) localize to the same sub-cellular organelles like endogenous MLL. Our results indicate that MLL-fusion proteins may not only disturb the cell homeostasis by gain-of-function of the chimeric protein, but also by interfering with the functions of endogenous MLL.
DOI: 10.6084/m9.figshare.7399205.v1
title: Novel sub-cellular localizations and intra-molecular interactions may define new functions of Mixed Lineage Leukemia protein

description: Mixed-lineage leukemia (MLL) protein is the best-characterized member of SET family of histone 3 lysine 4 methyltransferase, known for its transcriptional-activation role during development. <i>mll</i> gene rearrangements cause multiple kinds of aggressive leukemia in both children and adults. An important ‘first’ step in understanding the role of MLL in leukemogenesis would be to identify its localization throughout the cell cycle. In order to fully understand the breath of MLL functions in proliferating cells, we have analyzed its sub-cellular localization during the cell cycle. Our results show that MLL localizes to nucleolus and centrosome in interphase. During mitosis, it localizes to centrosomes and midbody in addition to previously reported spindle apparatus. Our results show that MLL<sub>N</sub> is required to translocate MLL<sub>C</sub> to the nucleolus. These finding suggest functional roles for MLL in nucleolus and mitosis. We also show how MLL-fusion proteins (MLL-FPs) localize to the same sub-cellular organelles like endogenous MLL. Our results indicate that MLL-fusion proteins may not only disturb the cell homeostasis by gain-of-function of the chimeric protein, but also by interfering with the functions of endogenous MLL.
DOI: 10.17632/k2ss2hznhk.1
title: Data from: Using Acoustic Data Repositories to Study Vocal Responses to Playback in a Neotropical Songbird

description: Data and R codes corresponding to the paper:
Guimarães PO, Guimarães LC, Oliveira RR, Almeida F, Diniz P. 2023. Using Acoustic Data Repositories to Study Vocal Responses to Playback in a Neotropical Songbird. Birds.

Data include (i) information about song recordings of Rufous-browed peppershrikes (Cyclarhis gujanensis) downloaded from acoustic repositories; (ii) acoustic features of the songs and their elements (notes). There is also the audio file (.wav) used to create the spectrogram (Figure 2 of the referenced paper).
DOI: 10.5281/zenodo.7599963
title: tornado_forecast_kit_v1

description: Testing GFDL SPEAR for seasonal tornado forecast
DOI: 10.5281/zenodo.7599962
title: tornado_forecast_kit_v1

description: Testing GFDL SPEAR for seasonal tornado forecast
DOI: 10.34740/kaggle/dsv/4937220
title: Egypt Gold Prices | Daily Updated
DOI: 10.6084/m9.figshare.21996836
title: A novel intestine-specific circRNA promotes intestinal adaption after irradiation via sponging miR-125a-5p

description: data and diagrams correspond to the figures
DOI: 10.6084/m9.figshare.21996836.v1
title: A novel intestine-specific circRNA promotes intestinal adaption after irradiation via sponging miR-125a-5p

description: data and diagrams correspond to the figures
DOI: 10.25390/caryinstitute.11801052.v52
title: Cary Institute Environmental Monitoring Program Current Year Data 2022

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, and water pollution and other streamwater chemistry. Our solar radiation monitoring includes diffuse and global photosynthetically active radiation (PAR), diffuse and global shortwave radiation, net radiation and UV. Long-term monitoring of solar radiation provides us with an understanding of atmospheric energy dynamics, which can affect natural and human systems. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: please click on the Cite button in the Figshare repository.<br>Those wishing to publish data from Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact data manager Vicky Kelly, kellyv@caryinstitute.org.<br>For complete data for previous years and for complete metadata, please see appropriate items for the Cary Institute Environmental Monitoring Program at https://caryinstitute.figshare.com/
DOI: 10.6084/m9.figshare.21997178
title: Supplementary Material for: Modulatory Effects of Ketamine and Lamotrigine on Cognition: Emotion Interaction in the Brain

description: <b><i>Introduction:</i></b> Cognition and emotion are fundamentally integrated in the brain and mutually contribute to behavior. The relation between working memory (WM) and emotion is particularly suited to investigate cognition-emotion interaction since WM is an essential component of many higher cognitive functions. Ketamine affects not only WM but also has a profound impact on emotional processing. Effects of acute ketamine challenge are sensitive to modulation by pretreatment with lamotrigine, which inhibits glutamate release. Accordingly, a combination of these approaches should be particularly suited to investigate cognition-emotion interaction. <b><i>Methods:</i></b> Seventy five healthy subjects were investigated in a double-blind, placebo-controlled, randomized, single-dose, parallel-group study with three treatment conditions. All subjects underwent two scanning sessions (acute/post 24 h). <b><i>Results:</i></b> Compared to placebo, acute ketamine administration induced significant dissociative, psychotomimetic, and cognitive effects, as well as an increase in neural activity during WM for positive stimuli. Inhibition of glutamate release by pretreatment with lamotrigine did not influence ketamine’s subjective effects, but significantly attenuated its impact on emotional WM and associated neural activity. There was no effect on these measures 24 h after ketamine administration. <b><i>Conclusion:</i></b> Our results demonstrate differential acute effects of modulated glutamate release and a swift restoration of disturbed neurobehavioral homeostasis in healthy subjects.