cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26946507.v1
title: Perspective: metabolomics has the potential to change the landscape of kidney transplantation diagnostics

description: Kidney transplantation is the most efficient renal replacement therapy. Current diagnostics for monitoring graft health are either invasive or lack precision. Metabolomics is an emerging discipline focused on the analysis of the small molecules involved in metabolism. Given the kidneys' central role in metabolic homeostasis and previous observations of altered metabolites correlating with restricted kidney graft function, metabolomics is highly promising for the discovery of novel biomarkers and the development of novel diagnostics. In this perspective, we summarize the known metabolic roles for the kidney, discuss biomarkers of graft health and immune status emerging from metabolomics research, and provide our perspective on how these and future findings can be integrated in clinical practice to enable precision diagnostics. Kidney transplantation (KT) remains the best treatment for renal disease but better diagnostic tests for monitoring graft health are required as the current ones are inadequate. Metabolomics, the study of small molecule metabolites in biological samples, is poised to enable the discovery of novel metabolite biomarkers. The kidneys play a central role in metabolic homeostasis, and impaired kidney function leads to metabolite level changes in plasma and urine. Discussion of representative papers performing metabolomics on plasma and urine samples from KT patients. Accurate prediction of rejection status using specific metabolite panels and a potential ability to determine the type of rejection (ABMR vs. TCMR). Survey of the KT metabolomics literature. Despite a general low concordance between studies due to differences in sample cohorts and analytical methodologies, multiple metabolite markers surface across multiple studies. Metabolic alterations observed with rejection across multiple studies include phenylalanine (directly metabolized by the kidney), symmetric dimethylarginine (a uremic toxin known to accumulate in plasma with compromised kidney function) and tryptophan (a precursor for kynurenine in immune-mediated responses). Multi-metabolite panels may provide earlier and more detailed insights into graft injury. Combination with protein and/or RNA biomarkers (smart biomarker panels) may further boost test performance.
DOI: 10.6084/m9.figshare.26946570
title: Novel metabolic biomarkers for the diagnosis of acute ischemic stroke

description: <b>Aim:</b> To identify novel metabolic biomarkers for patients with acute ischemic stroke (AIS). <b>Methods:</b> The metabolites in the sera of 63 patients with AIS aged 45∼77 years and 60 healthy individuals were analyzed by liquid chromatography (LC)-mass spectrometry (MS)/MS. The efficiency of significantly altered metabolites as biomarkers of AIS was evaluated by ROC curve analysis. <b>Results:</b> Different metabolic profiles were revealed in AIS patients' sera compared with healthy persons. Twelve significantly altered metabolites had an area under the curve (AUC) value &gt;0.80, demonstrating their potential as a biomarker of AIS. Among them, six metabolites are firstly reported to distinguish between AIS patients and healthy individuals. <b>Conclusion:</b> These 12 metabolites can be further researched as potential diagnostic biomarkers of AIS. In this study, the serum metabolome of patients with AIS aged 45–77 years were analyzed and the potential biomarkers for AIS diagnosis were identified. Twelve serum compounds were found to be significantly altered and have the ability to distinguish patients with AIS and healthy individuals effectively. Among them, six metabolites were firstly reported to have the potential as biomarkers for AIS diagnosis. These results will contribute to biomarker explorations from blood metabolites to predict AIS in patients from different age groups. Stroke is the second leading cause of death globally and leads to long-term disability and mortality in adults. Acute ischemic stroke (AIS) contributes to most of the incident strokes. However, no blood biomarker has demonstrated optimal sensitivity and specificity for AIS diagnosis up to date. The serum metabolome of 63 patients with AIS and 60 healthy individuals were analyzed by LC-MS/MS in this study. The blood samples were collected from patients with AIS at the early disease stage, prior to surgery and drug treatment. 76 metabolites were identified to be significantly changed (<i>p</i> &lt; 0.05, fold change &gt;1 or &lt;1) in the patients with AIS compared with the healthy individuals. Amino acid metabolites and lipid metabolites were the most altered metabolites in the patients with AIS. The metabolism of alanine, aspartate and glutamate was the most altered pathway in the patients with AIS with the highest impact value. 12 metabolites, including L-glutamic acid, 20α-dihydroprogesterone, 3-(2-Hydroxyphenyl) propanoic acid, L-lactic acid, 6-keto-prostaglandin F1α, 6-hydroxynicotinic acid, desmosterol, 1H-indole-3-acetamide, deoxyinosine, leucodopachrome 1-aminocyclopropanecarboxylic acid and GMP, showed high sensitivity and specificity (AUC &gt;0.80) in distinguishing patients with AIS from healthy individuals. These 12 metabolites can be further researched as potential diagnostic biomarkers of AIS.
DOI: 10.6084/m9.figshare.26946570.v1
title: Novel metabolic biomarkers for the diagnosis of acute ischemic stroke

description: <b>Aim:</b> To identify novel metabolic biomarkers for patients with acute ischemic stroke (AIS). <b>Methods:</b> The metabolites in the sera of 63 patients with AIS aged 45∼77 years and 60 healthy individuals were analyzed by liquid chromatography (LC)-mass spectrometry (MS)/MS. The efficiency of significantly altered metabolites as biomarkers of AIS was evaluated by ROC curve analysis. <b>Results:</b> Different metabolic profiles were revealed in AIS patients' sera compared with healthy persons. Twelve significantly altered metabolites had an area under the curve (AUC) value &gt;0.80, demonstrating their potential as a biomarker of AIS. Among them, six metabolites are firstly reported to distinguish between AIS patients and healthy individuals. <b>Conclusion:</b> These 12 metabolites can be further researched as potential diagnostic biomarkers of AIS. In this study, the serum metabolome of patients with AIS aged 45–77 years were analyzed and the potential biomarkers for AIS diagnosis were identified. Twelve serum compounds were found to be significantly altered and have the ability to distinguish patients with AIS and healthy individuals effectively. Among them, six metabolites were firstly reported to have the potential as biomarkers for AIS diagnosis. These results will contribute to biomarker explorations from blood metabolites to predict AIS in patients from different age groups. Stroke is the second leading cause of death globally and leads to long-term disability and mortality in adults. Acute ischemic stroke (AIS) contributes to most of the incident strokes. However, no blood biomarker has demonstrated optimal sensitivity and specificity for AIS diagnosis up to date. The serum metabolome of 63 patients with AIS and 60 healthy individuals were analyzed by LC-MS/MS in this study. The blood samples were collected from patients with AIS at the early disease stage, prior to surgery and drug treatment. 76 metabolites were identified to be significantly changed (<i>p</i> &lt; 0.05, fold change &gt;1 or &lt;1) in the patients with AIS compared with the healthy individuals. Amino acid metabolites and lipid metabolites were the most altered metabolites in the patients with AIS. The metabolism of alanine, aspartate and glutamate was the most altered pathway in the patients with AIS with the highest impact value. 12 metabolites, including L-glutamic acid, 20α-dihydroprogesterone, 3-(2-Hydroxyphenyl) propanoic acid, L-lactic acid, 6-keto-prostaglandin F1α, 6-hydroxynicotinic acid, desmosterol, 1H-indole-3-acetamide, deoxyinosine, leucodopachrome 1-aminocyclopropanecarboxylic acid and GMP, showed high sensitivity and specificity (AUC &gt;0.80) in distinguishing patients with AIS from healthy individuals. These 12 metabolites can be further researched as potential diagnostic biomarkers of AIS.
DOI: 10.15468/dl.uemqfm
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.82041 43.20017,3.82449 43.19585,3.79755 43.76998,2.77572 43.71817,2.82041 43.20017))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Helianthus tuberosus L."
 ]
}

 The dataset includes 170 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039083-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pm3qbs
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Prionailurus javanensis (Desmarest, 1816)"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039084-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxf6eb
title: Occurrence Download

description: A dataset containing 395286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is GBR.1.36_1",
 "TaxonKey is Aves",
 "Year 2021-2021"
 ]
}

 The dataset includes 395286 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039076-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fq3wxd
title: Occurrence Download

description: A dataset containing 733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.34724 43.78224,4.35178 43.78364,4.34894 43.78804,4.34238 43.78656,4.34724 43.78224))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 733 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039085-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39gvwn
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Paradoxurus hermaphroditus (Pallas, 1777)"
 ]
}

 The dataset includes 174 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039087-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26809078
title: Cathar endura data

description: This is a dataset of all known real-life cases (N = 36) of a radical form of fasting in the Cathar heterodox Christianity in Languedoc with several variables: sex, age group, family status, condition, relation to consolament, initiator, diet, reaction of the environment, etc.
DOI: 10.15468/dl.det3xc
title: Occurrence Download

description: A dataset listing the 1383 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 1383 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039079-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13884958
title: Material properties
DOI: 10.5281/zenodo.13884959
title: Material properties
DOI: 10.15468/dl.zydxa4
title: Occurrence Download

description: A dataset containing 218767 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ARGOS Satellite Tracking of animals"
 ]
}

 The dataset includes 218767 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039073-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9538576
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.15468/dl.fj4dhb
title: Occurrence Download

description: A dataset containing 960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Callosciurus notatus (Boddaert, 1785)"
 ]
}

 The dataset includes 960 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039089-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13884894
title: Pharmacokinetic Table Classification (PKTC) Dataset

description: The annotated data stored here is for training and evaluating table classification models to identify tables containing pharmacokinetic parameter estimates and demographic information from scientific text. 

Training, validation, and test files are released in pickle format and can be read into a Pandas DataFrame. 

Each row in the DataFrame corresponds to an annotated table with the following information: 



table_id: unique identifier expressing the PubMed Open Access article and table number of the retrieved table.

pmc_link: link to the original PubMed Open Access article from which the table was retrieved.

label:  exclusive table type label (e.g. Pharmacokinetics, Demographics or Other).  

caption: the table caption, in string format. 

HTML: the raw table in HTML format (unchanged from how it appears in PubMed Open Acess XML articles). 

footer: the table footer, in string format.
DOI: 10.5281/zenodo.13884895
title: Pharmacokinetic Table Classification (PKTC) Dataset

description: The annotated data stored here is for training and evaluating table classification models to identify tables containing pharmacokinetic parameter estimates and demographic information from scientific text. 

Training, validation, and test files are released in pickle format and can be read into a Pandas DataFrame. 

Each row in the DataFrame corresponds to an annotated table with the following information: 



table_id: unique identifier expressing the PubMed Open Access article and table number of the retrieved table.

pmc_link: link to the original PubMed Open Access article from which the table was retrieved.

label:  exclusive table type label (e.g. Pharmacokinetics, Demographics or Other).  

caption: the table caption, in string format. 

HTML: the raw table in HTML format (unchanged from how it appears in PubMed Open Acess XML articles). 

footer: the table footer, in string format.
DOI: 10.15468/dl.jedm3j
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -5.7866759",
 "DecimalLongitude is less than -5.6359005",
 "DecimalLatitude is greater than -16.0214844",
 "DecimalLatitude is less than -15.9042645",
 "Country is Saint Helena, Ascension and Tristan da Cunha"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039090-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9538606
title: BBC Burmese News rss
DOI: 10.5281/zenodo.13883234
title: Replication Package for the ICST 2025 Submission 190

description: Replication Package for the ICST 2025 Submission 190
DOI: 10.5281/zenodo.13883235
title: Replication Package for the ICST 2025 Submission 190

description: Replication Package for the ICST 2025 Submission 190
DOI: 10.5281/zenodo.13884960
title: Replication Package for the ICST 2025 Submission 190

description: Replication Package for the ICST 2025 Submission 190
DOI: 10.15468/dl.84sw6x
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Muntiacus muntjak (Zimmermann, 1780)"
 ]
}

 The dataset includes 96 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039091-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujvz3b
title: Occurrence Download

description: A dataset containing 2183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Macaca fascicularis (Raffles, 1821)"
 ]
}

 The dataset includes 2183 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039092-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a39kvt
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Glasgow Museums Biological Records Centre: Diptera: Hippoboscoidea"
 ]
}

 The dataset includes 60 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039093-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcv29n
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -5.7866759",
 "DecimalLongitude is less than -5.6359005",
 "DecimalLatitude is greater than -16.0214844",
 "DecimalLatitude is less than -15.9042645",
 "Country is Saint Helena, Ascension and Tristan da Cunha"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039094-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44ahqs
title: Occurrence Download

description: A dataset containing 257445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Pinus pinea L."
 ]
}

 The dataset includes 257445 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039088-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j57zdc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Glasgow Museums Biological Records Centre: Diptera: Hippoboscoidea"
 ]
}

 The dataset includes 60 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039095-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tds9pa
title: Occurrence Download

description: A dataset containing 1105 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -172.8036957",
 "DecimalLongitude is less than -169.423645",
 "DecimalLatitude is greater than -14.3685446",
 "DecimalLatitude is less than -13.4456501",
 "Country is American Samoa"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1105 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039096-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27159183
title: Canaloplasty_10_year_results.xlsx

description: Retrospective data analysis 10 years following a glaucoma surgery, called canaloplasty.
DOI: 10.5518/220
title: Dataset for 'The Effects of Geometric Uncertainties on Computational Modelling of Knee Biomechanics'

description: This dataset contains the finite element models developed in this study and the outputs of the finite element models presented in the paper.
DOI: 10.15468/dl.abvn6p
title: Occurrence Download

description: A dataset containing 736 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -172.8036957",
 "DecimalLongitude is less than -169.423645",
 "DecimalLatitude is greater than -14.3685446",
 "DecimalLatitude is less than -13.4456501",
 "Country is Samoa"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 736 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039098-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5t7kcn
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is IDN",
 "TaxonKey is Hystrix brachyura Linnaeus, 1758"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039097-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.