cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7kh2sh1
title: Data from: Are females in good condition better able to cope with costly males?

description: The costs of mating for a female might depend on both her phenotype and
 that of her mate. Sexually antagonistic male traits that negatively affect
 females are often condition-dependent, so a male’s rearing environment can
 affect the costs he imposes on his mate. Likewise, a female’s ability to
 resist male-imposed costs might be condition-dependent. We experimentally
 manipulated female and male body condition in the seed beetle
 Callosobruchus maculatus by rearing larvae on a good or poor quality diet.
 We then tested whether the cost of mating for a female (measured as
 copulation behaviors associated with sexual conflict as well as her
 fecundity and survival) depended on her and/or her mate’s body condition.
 As expected, females in better condition laid more eggs and lived longer,
 indicating higher fitness. More interestingly, females that mated with
 males in better condition had shorter copulations and started to kick
 sooner. Both results are potentially indicative of greater sexual
 conflict. We suggest that these changes in mating behavior might be driven
 by the higher toxicity of ejaculates of males that are in better
 condition. Crucially, however, the lack of any interaction between male
 and female condition for the variables measured suggests that any increase
 in the costs of mating with a male in better condition is not ameliorated
 by the female’s own condition.
description: Beetle Condition:
 behaviour and fitness dataThis is the data for the
 manuscript Are females in good condition better able to cope with costly
 males? Data was collected by MIC. All methods are described in the
 associated manuscript. Column headings are described in the excel
 spreadsheet.BeetleCondition.xlsx
DOI: 10.5061/dryad.r759h
title: Data from: Latitudinal environmental niches and riverine barriers shaped the phylogeography of the central Chilean endemic Dioscorea humilis (Dioscoreaceae)

description: The effects of Pleistocene glaciations and geographical barriers on the
 phylogeographic patterns of lowland plant species in Mediterranean-climate
 areas of Central Chile are poorly understood. We used Dioscorea humilis
 (Dioscoreaceae), a dioecious geophyte extending 530 km from the Valparaíso
 to the Bío-Bío Regions, as a case study to disentangle the spatio-temporal
 evolution of populations in conjunction with latitudinal environmental
 changes since the Last Inter-Glacial (LIG) to the present. We used nuclear
 microsatellite loci, chloroplast (cpDNA) sequences and environmental niche
 modelling (ENM) to construct current and past scenarios from bioclimatic
 and geographical variables and to infer the evolutionary history of the
 taxa. We found strong genetic differentiation at nuclear microsatellite
 loci between the two subspecies of D. humilis, probably predating the LIG.
 Bayesian analyses of population structure revealed strong genetic
 differentiation of the widespread D. humilis subsp. humilis into northern
 and southern population groups, separated by the Maipo river. ENM revealed
 that the ecological niche differentiation of both groups have been
 maintained up to present times although their respective geographical
 distributions apparently fluctuated in concert with the climatic
 oscillations of the Last Glacial Maximum (LGM) and the Holocene. Genetic
 data revealed signatures of eastern and western postglacial expansion of
 the northern populations from the central Chilean depression, whereas the
 southern ones experienced a rapid southward expansion after the LGM. This
 study describes the complex evolutionary histories of lowland
 Mediterranean Chilean plants mediated by the summed effects of spatial
 isolation caused by riverine geographical barriers and the climatic
 changes of the Quaternary.
description: Population data and
 microsatellite genotype matrix of Disocorea humilisPopulation data and
 microsatellite genotype matrix of Disocorea humilis
DOI: 10.5061/dryad.767tg03
title: Data from: The theory of island biogeography, the sample-area effect, and the habitat diversity hypothesis: complementarity in a naturally fragmented landscape of lake islands

description: Aim: Investigate relationships between fragmentation and species diversity
 in the context of the theory of island biogeography, sample-area effect,
 and habitat diversity hypothesis. Location: Lake of the Woods, Canada.
 Taxon: Vascular plants Methods: Vascular plant species diversity was
 inventoried on 30 islands, organized into two island sets. Each island set
 contained four size classes that varied in degree of fragmentation while
 controlling for the sample-area effect (small island set: 8×0.1-ha,
 4×0.2-ha, 2×0.4-ha, and 1×0.8-ha islands; large island set: identical
 pattern utilizing 1.0-ha to 8.0-ha islands). Fragmentation effects were
 then examined using SLOSS-based analyses, addressing whether single large
 or several small islands contained more species: (1) direct comparisons of
 species and habitat richness across size classes; (2) extrapolations of
 species-area relationships; and (3) analyses of species and habitat
 accumulation curves. Multigroup path analysis was next used to quantify
 effects of habitat diversity, island area, and isolation on species
 richness for both island sets. Finally, pairwise and multiple-site
 dissimilarity was estimated for both species and habitats across 0.1-ha
 and 1.0-ha islands to investigate whether: (1) variation in species
 composition was related to habitat composition; and (2) species
 dissimilarity increased with inter-island distance. Results: SLOSS-based
 analyses indicated that several small islands contained more species than
 single large islands in both island sets. This pattern was also observed
 for habitats, but only in the small islands set. Path analysis suggested
 that island area had significant direct and indirect effects (mediated by
 habitat diversity) on species richness. Habitat diversity and island
 isolation had significant positive and negative effects on species
 richness, respectively, independent of island area. Species and habitat
 dissimilarities were significantly related across 0.1-ha but not 1.0-ha
 islands, and showed no relationship to inter-island distance. Main
 Conclusions: The overall positive relationship between fragmentation and
 species richness may be attributed to greater habitat diversity and
 increased species dissimilarity across smaller islands relative to larger
 islands. However, negative isolation effects indicate that landscape
 configuration is still an important conservation consideration. These
 results each align with different predictions of the theory of island
 biogeography, sample-area effect, and habitat diversity hypothesis,
 questioning the exclusivity of these theoretical frameworks.
description: MacDonald et al. 2018
 vascular plant dataContained within this
 file are the vascular plant data used in our analyses, as well as
 information for voucher specimens located in the University of Alberta
 Vascular Plant HerbariumMacDonald_et_al._2018_vascular_plant_data.xlsx
DOI: 10.5061/dryad.hb824gd4
title: Data from: Ancestral plasticity and allometry in threespine stickleback reveal phenotypes associated with derived, freshwater ecotypes

description: For over a century, evolutionary biologists have debated whether and how
 phenotypic plasticity impacts the processes of adaptation and
 diversification. The empirical tests required to resolve these issues have
 proven elusive, mainly because it requires documentation of ancestral
 reaction norms, a difficult prospect where many ancestors are either
 extinct or have evolved. The threespine stickleback radiation is not
 limited in this regard, making it an ideal system in which to address
 general questions regarding the role of plasticity in adaptive evolution.
 As retreating ice sheets have exposed new habitats, oceanic stickleback
 founded innumerable freshwater populations, many of which have evolved
 parallel adaptations to their new environments. Because the founding
 oceanic population is extant, we can directly evaluate whether specific
 patterns of ancestral phenotypic expression in the context of novel
 environments (plasticity), or over ontogeny, predisposed the repeated
 evolution of “benthic” and “limnetic” ecotypes in shallow and deep lakes,
 respectively. Consistent with this hypothesis, we found that oceanic
 stickleback raised in a complex habitat and fed a macroinvertebrate diet
 expressed traits resembling derived, benthic fish. Alternatively, when
 reared in a simple environment on a diet of zooplankton, oceanic
 stickleback developed phenotypes resembling derived, limnetic fish. As
 fish in both treatments grew, their body depths increased allometrically,
 as did the size of their mouths, while their eyes became relatively
 smaller. Allometric trajectories were subtly but significantly impacted by
 rearing environment. Thus, both environmental and allometric influences on
 development, along with their interactive effects, produced variation in
 phenotypes consistent with derived benthic and limnetic fish, which may
 have predisposed the repeated genetic accommodation of this specific suite
 of traits. We also found significant shape differences between marine and
 anadromous stickleback, which has implications for evaluating the
 ancestral state of stickleback traits.
description: WUND_BJLS_TotalBodyAllFishThis is a .tps morphometrics file of digitized landmarks from all stickleback in the study. The file can be read by a number of geometric morphometrics software packages, including James Rohlf's tps software, Chris Klingenberg's MorphoJ software, or H. David Sheets' IMP software.WUND_BJLS_ClassifiersThis file contains identifier variables associated with the specimens in the companion tps file. It is formatted for use as the identifier variables for MorphoJ, but otherwise as a text file can be used to match the landmark data in the tps file with the population and treatment identity of the specimens in the tps file.
DOI: 10.5061/dryad.69g7p
title: Data from: Pumping ions: rapid parallel evolution of ionic regulation following habitat invasions

description: Marine to freshwater colonizations constitute among the most dramatic
 evolutionary transitions in the history of life. This study examined
 evolution of ionic regulation following saline-to-freshwater transitions
 in an invasive species. In recent years, the copepod Eurytemora affinis
 has invaded freshwater habitats multiple times independently. We found
 parallel evolutionary shifts in ion-motive enzyme activity (V-type H+
 ATPase, Na+/K+-ATPase) across independent invasions and in replicate
 laboratory selection experiments. Freshwater populations exhibited
 increased V-type H+ ATPase activity in fresh water (0 PSU) and declines at
 higher salinity (15 PSU) relative to saline populations. This shift
 represented marked evolutionary increases in plasticity. In contrast,
 freshwater populations displayed reduced Na+/K+-ATPase activity across all
 salinities. Most notably, modifying salinity alone during laboratory
 selection experiments recapitulated the evolutionary shifts in V-type H+
 ATPase activity observed in nature. Maternal and embryonic acclimation
 could not account for the observed shifts in enzyme activity. V-type H+
 ATPase function has been hypothesized to be critical for freshwater and
 terrestrial adaptations, but evolution of this enzyme function had not
 been previously demonstrated in the context of habitat transitions.
 Moreover, the speed of these evolutionary shifts was remarkable, within a
 few generations in the laboratory and a few decades in the wild.
description: Lee_ATPase_DATA_ALL
DOI: 10.5061/dryad.3cn95
title: Data from: Optimal frequency of rabies vaccination campaigns in Sub-Saharan Africa

description: Rabies causes more than 24 000 human deaths annually in Sub-Saharan
 Africa. The World Health Organization recommends annual canine vaccination
 campaigns with at least 70% coverage to control the disease. While
 previous studies have considered optimal coverage of animal rabies
 vaccination, variation in the frequency of vaccination campaigns has not
 been explored. To evaluate the cost-effectiveness of rabies canine
 vaccination campaigns at varying coverage and frequency, we parametrized a
 rabies virus transmission model to two districts of northwest Tanzania,
 Ngorongoro (pastoral) and Serengeti (agro-pastoral). We found that optimal
 vaccination strategies were every 2 years, at 80% coverage in Ngorongoro
 and annually at 70% coverage in Serengeti. We further found that the
 optimality of these strategies was sensitive to the rate of rabies
 reintroduction from outside the district. Specifically, if a
 geographically coordinated campaign could reduce reintroduction,
 vaccination campaigns every 2 years could effectively manage rabies in
 both districts. Thus, coordinated campaigns may provide monetary savings
 in addition to public health benefits. Our results indicate that frequency
 and coverage of canine vaccination campaigns should be evaluated
 simultaneously and tailored to local canine ecology as well as to the risk
 of disease reintroduction from surrounding regions.
description: Ngorongoro_Base_CaseModel code for Ngorongoro in base case.Serengeti_Base_CaseModel code for Serengeti in base case.Uncertainty_Analysis_ReintroductionModel code for uncertainty analysis varying reintroduction in Ngorongoro and SerengetiUncertainty_NgorongoroModel code for uncertainty analysis in Ngorongoro.Uncertainty_SerengetiModel code for uncertainty analysis in Serengeti.
DOI: 10.5061/dryad.29pb4
title: Data from:Differential induction of plant chemical defenses by parasitized and unparasitized herbivores: consequences for reciprocal, multitrophic interactions

description: Insect parasitoids can play ecologically important roles in virtually all
 terrestrial plant–insect herbivore interactions, yet whether parasitoids
 alter the defensive traits that underlie interactions between plants and
 their herbivores remains a largely unexplored question. Here, we examined
 the reciprocal trophic interactions among populations of the wild cabbage
 Brassica oleracea that vary greatly in their production of defensive
 secondary compounds – glucosinolates (GSs), a generalist herbivore,
 Trichoplusia ni, and its polyembryonic parasitoid Copidosoma floridanum.
 In a greenhouse environment, plants were exposed to either healthy
 (unparasitized), parasitized, or no herbivores. Feeding damage by
 herbivores induced higher levels of the indole GSs, glucobrassicin and
 neoglucobrassicin, but not any of the other measured GSs. Herbivores
 parasitized by C. floridanum induced cabbage plants to produce 1.5 times
 more indole GSs than levels induced by healthy T. ni and five times more
 than uninduced plants. As a gregarious endoparasitoid, C. floridanum
 causes its host T. ni to feed more than unparasitized herbivores resulting
 in increased induction of indole GSs. In turn, herbivore fitness
 parameters (including differential effects on male and female
 contributions to lifetime fecundity in the herbivore) were negatively
 correlated with the aliphatic GSs, sinigrin and gluconapin, whereas
 parasitoid fitness parameters were negatively correlated with the indole
 GSs, glucobrassicin and neoglucobrassicin. That herbivores and their
 parasitoids appear to be affected by different sets of GSs was unexpected
 given the intimate developmental associations between host and parasitoid.
 This study is the first to demonstrate that parasitoids, through
 increasing feeding by their herbivorous hosts, can induce higher levels of
 non-volatile plant chemical defenses. While parasitoids are widely
 recognized to be ubiquitous in most terrestrial insect herbivore
 communities, their role in influencing plant–insect herbivore
 relationships is still vastly underappreciated.
description: Ode et al. OIK-03076
 dataExcel file containing
 results of a greenhouse study of the effects of parasitized and
 unparasitized herbivores on glucosinolate concentrations of four different
 cabbage populations (3 wild and 1 cultivar). Data on the correlations
 between glucosinolate profiles on herbivore and parasitoid fitness
 parameters are also given.
DOI: 10.5061/dryad.366nd
title: Data from: Niche limits of symbiotic gut microbiota constrain the salinity tolerance of brine shrimp

description: Symbiosis generally causes an expansion of the niche of each partner along
 the axis for which a service is mutually provided. However, for other
 axes, the niche can be restricted to the intersection of each partner’s
 niche and can thus be constrained rather than expanded by mutualism. We
 explore this phenomenon using Artemia as a model system. This crustacean
 is able to survive at very high salinities but not at low salinities,
 although its hemolymph’s salinity is close to freshwater. We hypothesized
 that this low-salinity paradox results from poor performance of its
 associated microbiota at low salinity. We showed that, in sterile
 conditions, Artemia had low survival at all salinities when algae were the
 only source of carbon. In contrast, survival was high at all salinities
 when fed with yeast. We also demonstrated that bacteria isolated from
 Artemia’s gut reached higher densities at high salinities than at low
 salinities, including when grown on algae. Taken together, our results
 show that Artemia can survive at low salinities, but their gut microbiota,
 which are required for algae digestion, have reduced fitness. Widespread
 facultative symbiosis may thus be an important determinant of niche limits
 along axes not specific to the mutualistic interaction.
description: Excel file with
 experimentation datadata.xlsx
DOI: 10.5061/dryad.qj811
title: Data from: Ejaculate quality and constraints in relation to sperm competition levels among eutherian mammals

description: The outcome of sperm competition is influenced by the relative quantity
 and quality of sperm among competing ejaculates. Whereas it is well
 established that individual ejaculate traits evolve rapidly under
 postcopulatory sexual selection, little is known about other factors that
 might influence the evolution of ejaculates. For example, the metabolic
 rate is likely to affect the sperm production rate and the cellular
 activity or metabolism of sperm, and it has recently been suggested to
 constrain the evolution of sperm length in large but not small mammals. I
 thus examined in eutherian mammals how ejaculate quality traits vary with
 one another and with testis mass, body size, and metabolism. I found all
 ejaculate traits to covary positively with one another and to increase
 with relative testis mass. When controlling for testis mass, small-bodied
 species showed superior sperm quality (but not sperm number). Furthermore,
 sperm motility and viability were positively associated with the
 mass-corrected metabolic rate, but the percentage of morphologically
 normal and acrosome-intact sperm were not. These results indicate that
 body size and the energy budget may also influence the evolution of
 ejaculate quality, although these influences appear to vary among traits.
description: datasetEjaculate quality traits, body mass, combined testis mass and basal metabolic rate for all species examined, collected from the literature (see References file). D=sperm quality traits were measured in samples from dissected specimens rather than ejaculates; (D)=only some of the traits were measured in dissected specimens; *=Combined testis mass was calculated from testicular dimensions or testis volume following: CTM = 1.166 * L * W * W, where L and W are the mean length and width, respectively, of the two testes; **=BMR was converted either from kcal/d (assuming 1L O2 = 4.839 kcal) or from kJ/d (assuming 1L O2 = 20.083 kJ)ReferencesReferences associated with the datasetphylogenyPhylogeny in NEXUS format, associated with dataset, based on combined molecular phylogenies (for references, see readme file).
DOI: 10.6084/m9.figshare.31153619.v1
title: Additional file 1 of Safety, tolerability, and efficacy of high versus low-dose, short versus long-course daily primaquine for the radical cure of uncomplicated Plasmodium vivax malaria in children under 15 years of age: an open-label, non-inferiority, randomized controlled trial (CHILDPRIM)

description: Additional file1
DOI: 10.6084/m9.figshare.31153619
title: Additional file 1 of Safety, tolerability, and efficacy of high versus low-dose, short versus long-course daily primaquine for the radical cure of uncomplicated Plasmodium vivax malaria in children under 15 years of age: an open-label, non-inferiority, randomized controlled trial (CHILDPRIM)

description: Additional file1
DOI: 10.5061/dryad.26087
title: Data from: Toward a geography of omnivory: omnivores increase carnivory when sodium is limiting

description: 1. Toward understanding the geography of omnivory, we tested three
 hypotheses that predict the proportion of animal tissue consumed: The
 Sodium Limitation Hypothesis predicts that omnivores increase animal
 consumption in Na-poor environments because Na bioaccumulates from plants
 to predators; thus, heterotrophs are Na-rich sources. The Nitrogen
 Limitation and Habitat Productivity Hypotheses use the same logic to
 predict more animal consumption in N-poor and productive environments
 respectively. 2. Omnivory is a common trophic strategy, but what
 determines the balance of plant and animal tissue omnivores consume is
 relatively unexplored. Most of what we know comes from single populations
 at local scales. Here we quantitatively test these three hypotheses at a
 large geographic scale and across 20 species of omnivorous ants. 3. We
 tested each hypothesis using N stable isotopes (δ 15 N) to quantify the
 degree of carnivory in ant populations in 20 forests that span 12°
 latitude from Georgia to Maine, USA. We used the difference in δ 15 N
 between 20 ant conspecifics in 10 genera between two paired forests (10
 pairs of 20 forests) that consisted of a coastal and inland forests on the
 same latitude to determine if the proportion of animal tissue consumed
 could be predicted based on Na, N or NPP. 4. Sodium gradients accounted
 for 18% of the variation in δ 15 N, 45% if one outlier ant species was
 omitted. In contrast, the Nitrogen Limitation and Habitat Productivity
 Hypotheses, which predict more animal consumption in N-poor and more
 productive environments respectively, failed to vary with δ 15 N. 5. Our
 results reveal a geography of omnivory driven in part by access to Na.
description: Ant_dN_Field_Lab_Data_201715N stable isotope, chemistry, and NaCl and Sugar usage data for ants species from 20 forests from Georgia to Maine, USA.
DOI: 10.15468/dl.by7utr
title: Occurrence Download

description: A dataset containing 5644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centropogon cornutus"
 ]
}

 The dataset includes 5644 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000955-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.