cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8275673
title: Additional file 2: of Understanding health management and safety decisions using signal processing and machine learning

description: RQA exemplarÂ data. (MAT 236 bytes)
DOI: 10.6084/m9.figshare.8275673.v1
title: Additional file 2: of Understanding health management and safety decisions using signal processing and machine learning

description: RQA exemplarÂ data. (MAT 236 bytes)
DOI: 10.6084/m9.figshare.8275661
title: Additional file 1: of Understanding health management and safety decisions using signal processing and machine learning

description: Â RQA Matlab script. (M 1 kb)
DOI: 10.6084/m9.figshare.8275661.v1
title: Additional file 1: of Understanding health management and safety decisions using signal processing and machine learning

description: Â RQA Matlab script. (M 1 kb)
DOI: 10.6084/m9.figshare.8275622
title: MOESM1 of What evidence exists on the effectiveness of different types of olfactory lures as attractants for invasive mammalian predators? A systematic map protocol

description: Additional file 1. Metadata from all the studies assessed in the systematic map.
DOI: 10.6084/m9.figshare.8275622.v1
title: MOESM1 of What evidence exists on the effectiveness of different types of olfactory lures as attractants for invasive mammalian predators? A systematic map protocol

description: Additional file 1. Metadata from all the studies assessed in the systematic map.
DOI: 10.6084/m9.figshare.8275598
title: MOESM1 of Multispecies hybridization in birds

description: Additional file 1. Overview of patterns of hybridization in six bird orders (Anseriformes, Galliformes, Charadriiformes, Piciformes, Apodiformes and Passeriformes), based on the Serge Dumont Bird Hybrid Database ( http://www.bird-hybrids.com ).
DOI: 10.6084/m9.figshare.8275589
title: MOESM9 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 9. A spreadsheet describing the layout of all 1173 peptides contained on the custom peptide microarray. Peptide map of 13 MSP7 protein sequences elongated with neutral GSGSGSG linkers at the C- and N-terminus and translated into overlapping peptides, with peptide length of 15 amino acids and peptide overlap of 11 amino acids. Green and red peptides denote positive controls.
DOI: 10.6084/m9.figshare.8275598.v1
title: MOESM1 of Multispecies hybridization in birds

description: Additional file 1. Overview of patterns of hybridization in six bird orders (Anseriformes, Galliformes, Charadriiformes, Piciformes, Apodiformes and Passeriformes), based on the Serge Dumont Bird Hybrid Database ( http://www.bird-hybrids.com ).
DOI: 10.6084/m9.figshare.8275589.v1
title: MOESM9 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 9. A spreadsheet describing the layout of all 1173 peptides contained on the custom peptide microarray. Peptide map of 13 MSP7 protein sequences elongated with neutral GSGSGSG linkers at the C- and N-terminus and translated into overlapping peptides, with peptide length of 15 amino acids and peptide overlap of 11 amino acids. Green and red peptides denote positive controls.
DOI: 10.6084/m9.figshare.8275565
title: MOESM6 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 6. Clusters of co-expressed genes generated from transcript abundance data and their enriched GO/KEGG terms. In pairwise comparisons of Patient Groups, transcript abundance values for DEGs were analysed with coseq, to produce clusters of genes with expression profiles displaying significant positive correlations. Comparison of Patient Groups 3 and 4, 2 and 4 and 1 and 4 generated 14, 7 and 6 clusters respectively; the membership of these clusters is shown in three separate tabs, with notable stage-specific genes and MSP-7 shaded red. Also shown are the results of enrichment analyses for selected clusters in each comparison (i.e. those displaying a distinct profile with respect to patient group 4), and a filtered table of the same results showing only non-redundant ontological terms.
DOI: 10.6084/m9.figshare.8275565.v1
title: MOESM6 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 6. Clusters of co-expressed genes generated from transcript abundance data and their enriched GO/KEGG terms. In pairwise comparisons of Patient Groups, transcript abundance values for DEGs were analysed with coseq, to produce clusters of genes with expression profiles displaying significant positive correlations. Comparison of Patient Groups 3 and 4, 2 and 4 and 1 and 4 generated 14, 7 and 6 clusters respectively; the membership of these clusters is shown in three separate tabs, with notable stage-specific genes and MSP-7 shaded red. Also shown are the results of enrichment analyses for selected clusters in each comparison (i.e. those displaying a distinct profile with respect to patient group 4), and a filtered table of the same results showing only non-redundant ontological terms.
DOI: 10.6084/m9.figshare.8275553
title: MOESM3 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 3. Genes showing significant differential expression in pairwise comparisons of Patient Groups. Results of differential expression tests in pairwise comparisons of Patient Groups 1–4 using DEseq2. Fold-change is log2-transformed. p-value is Bonferroni-corrected for multiple tests. Differentially expressed genes are defined as having an adjusted p value &lt; 0.05 and are shaded red. Significant MSP-7 genes are listed first.Genes showing significant differential expression in pairwise comparisons of Patient Groups. Results of differential expression tests in pairwise comparisons of Patient Groups 1–4 using DEseq2. Fold-change is log2-transformed. p-value is Bonferroni-corrected for multiple tests. Differentially expressed genes are defined as having an adjusted p value
DOI: 10.6084/m9.figshare.8275550
title: Additional file 3: of The complex transmission seasonality of hand, foot, and mouth disease and its driving factors

description: The number of births and population in Anhui, Henan and Chongqing from 2008 to 2011. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.8275553.v1
title: MOESM3 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 3. Genes showing significant differential expression in pairwise comparisons of Patient Groups. Results of differential expression tests in pairwise comparisons of Patient Groups 1–4 using DEseq2. Fold-change is log2-transformed. p-value is Bonferroni-corrected for multiple tests. Differentially expressed genes are defined as having an adjusted p value &lt; 0.05 and are shaded red. Significant MSP-7 genes are listed first.Genes showing significant differential expression in pairwise comparisons of Patient Groups. Results of differential expression tests in pairwise comparisons of Patient Groups 1–4 using DEseq2. Fold-change is log2-transformed. p-value is Bonferroni-corrected for multiple tests. Differentially expressed genes are defined as having an adjusted p value
DOI: 10.6084/m9.figshare.8275550.v1
title: Additional file 3: of The complex transmission seasonality of hand, foot, and mouth disease and its driving factors

description: The number of births and population in Anhui, Henan and Chongqing from 2008 to 2011. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.8275532
title: MOESM10 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 10. Fluorescent signal intensity for 236 peptide spots on a custom PvMSP-7 peptide microarray that gave significant responses to human plasma from natural infections. Signal intensity values in infected and naĂŻve plasma are shown for 236 putative B-cell epitopes identified using a custom MSP-7 peptide microarray, assayed with plasma from clinical vivax malaria infections. Plasma were pooled into five age groups. Peptides shown gave significant responses when normalized using LIMMA (p-value adjusted form multiple tests), i.e. the response was significantly greater than the corresponding response from naĂŻve, uninfected patients. For each peptide, the relevant PvMSP-7 paralog is named, and the number of age groups for which the peptide gave a significant response is specified.
DOI: 10.6084/m9.figshare.8275535
title: MOESM1 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 1. Transcript abundance values (CPM) for RNA-seq data mapped to 5838 Plasmodium vivax PvPO1 genes. Log2 transformed normalized read counts for 5838 genes generated by DEseq2 after mapping RNA-seq data with Tophat2.
DOI: 10.6084/m9.figshare.8275538
title: Additional file 1: of The complex transmission seasonality of hand, foot, and mouth disease and its driving factors

description: RegressionData. The data used for the regression model. Data in this file include the meteorological data, the highway passenger traffic data, whether schools are in vacations or opening, and information of the Chinese Spring Festival period. (CSV 6 kb)
DOI: 10.6084/m9.figshare.8275532.v1
title: MOESM10 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 10. Fluorescent signal intensity for 236 peptide spots on a custom PvMSP-7 peptide microarray that gave significant responses to human plasma from natural infections. Signal intensity values in infected and naĂŻve plasma are shown for 236 putative B-cell epitopes identified using a custom MSP-7 peptide microarray, assayed with plasma from clinical vivax malaria infections. Plasma were pooled into five age groups. Peptides shown gave significant responses when normalized using LIMMA (p-value adjusted form multiple tests), i.e. the response was significantly greater than the corresponding response from naĂŻve, uninfected patients. For each peptide, the relevant PvMSP-7 paralog is named, and the number of age groups for which the peptide gave a significant response is specified.
DOI: 10.6084/m9.figshare.8275538.v1
title: Additional file 1: of The complex transmission seasonality of hand, foot, and mouth disease and its driving factors

description: RegressionData. The data used for the regression model. Data in this file include the meteorological data, the highway passenger traffic data, whether schools are in vacations or opening, and information of the Chinese Spring Festival period. (CSV 6 kb)
DOI: 10.6084/m9.figshare.8275535.v1
title: MOESM1 of Clinical expression and antigenic profiles of a Plasmodium vivax vaccine candidate: merozoite surface protein 7 (PvMSP-7)

description: Additional file 1. Transcript abundance values (CPM) for RNA-seq data mapped to 5838 Plasmodium vivax PvPO1 genes. Log2 transformed normalized read counts for 5838 genes generated by DEseq2 after mapping RNA-seq data with Tophat2.
DOI: 10.6084/m9.figshare.8275529
title: Data de planes de estudio: UNdeC, UdeA y UNET

description: Durante mucho tiempo se han implementado reformas o actualizaciones curriculares que pretenden hacer que los planes de estudio sean más adecuados a las exigencias de la realidad. En las carreras universitarias repensar y reorganizar un plan de estudio es un procedimiento que se da con cierta frecuencia, pero no se conoce si tales modificaciones permean o no la formación académica y profesional de los estudiantes y egresados. En las carreras universitarias de distintos países existen sistemas de acreditación y validación que dictan algunos lineamientos para que las carreras cuenten con estándares de calidad. Este estudio se propone una comparación entre las currículas de tres carreras de Ingeniería en Ciencias de la Computación de tres universidades públicas de diferentes países, a saber: Ingeniería en Sistemas de la Universidad Nacional de Chilecito (Argentina), Ingeniería de Sistemas de la Universidad de Antioquia (Colombia) e Ingeniería en Informática de la Universidad Nacional Experimental del Táchira (Venezuela). Se toma de manera puntual la subdisciplina de Sistemas de Información de acuerdo con las recomendaciones de la Computing Curricula 2005 (CC2005) de la Association for Computing Machinery (ACM), la Association for Information Systems (AIS) y de la IEEE-Computer Society (IEEE-CS). Si bien el objetivo general es comparar las tres mallas curriculares de esas Carreras sobre la base de las ciencias básicas, básicas de ingeniería, formación profesional, formación complementaria y socio-humanístico, se propone conocer cómo se configuran y tensionan esas áreas entre sí y las condiciones que favorecen o no la formación de los ingenieros en un campo del saber con tantas exigencias a nivel global. Para el estudio se tomaron los planes de estudio y una encuesta autoadministrada a una muestra de egresados de las carreras en las tres universidades. Estas dimensiones de análisis permiten afirmar que los planes de estudio de tales carreras de Ingeniería se adecuan a los vertiginosos cambios de la época, si hay un flujo curricular más o menos flexible y que se posibilita en pro de un currículo más contextuado que vincule los saberes profesionales con una formación que garantiza una calidad del egresado.
DOI: 10.6084/m9.figshare.8275499
title: Three new serine-protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) from extra-intestinal pathogenic <i>Escherichia coli</i> and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney

description: Serine protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) are secreted proteins that contribute to virulence and function as proteases, toxins, adhesins, and/or immunomodulators. An extra-intestinal pathogenic <i>E. coli</i> (ExPEC) O1:K1 strain, QT598, isolated from a turkey, was shown to contain <i>vat, tsh</i>, and three uncharacterized SPATE-encoding genes. Uncharacterized SPATEs: Sha (<i>S</i>erine-protease <i>h</i>emagglutinin <i>a</i>utotransporter), TagB and TagC (<i>t</i>andem <i>a</i>utotransporter <i>g</i>enes <i>B</i> and <i>C</i>) were tested for activities including hemagglutination, autoaggregation, and cytotoxicity when expressed in <i>E. coli</i> K-12. Sha and TagB conferred autoaggregation and hemagglutination activities. TagB, TagC, and Sha all exhibited cytopathic effects on a bladder epithelial cell line. In QT598, <i>tagB</i> and <i>tagC</i> are tandemly encoded on a genomic island, and were present in 10% of UTI isolates and 4.7% of avian <i>E. coli</i>. Sha is encoded on a virulence plasmid and was present in 1% of UTI isolates and 20% of avian <i>E. coli</i>. To specifically examine the role of SPATEs for infection, the 5 SPATE genes were deleted from strain QT598 and tested for cytotoxicity. Loss of all five SPATEs abrogated the cytopathic effect on bladder epithelial cells, although derivatives producing any of the 5 SPATEs retained cytopathic activity. In mouse infections, <i>sha</i> gene-expression was up-regulated a mean of sixfold in the bladder compared to growth <i>in vitro</i>. Loss of either <i>tagBC</i> or <i>sha</i> did not reduce urinary tract colonization. Deletion of all 5 SPATEs, however, significantly reduced competitive colonization of the kidney supporting a cumulative role of SPATEs for QT598 in the mouse UTI model.
DOI: 10.6084/m9.figshare.8275529.v1
title: Data de planes de estudio: UNdeC, UdeA y UNET

description: Durante mucho tiempo se han implementado reformas o actualizaciones curriculares que pretenden hacer que los planes de estudio sean más adecuados a las exigencias de la realidad. En las carreras universitarias repensar y reorganizar un plan de estudio es un procedimiento que se da con cierta frecuencia, pero no se conoce si tales modificaciones permean o no la formación académica y profesional de los estudiantes y egresados. En las carreras universitarias de distintos países existen sistemas de acreditación y validación que dictan algunos lineamientos para que las carreras cuenten con estándares de calidad. Este estudio se propone una comparación entre las currículas de tres carreras de Ingeniería en Ciencias de la Computación de tres universidades públicas de diferentes países, a saber: Ingeniería en Sistemas de la Universidad Nacional de Chilecito (Argentina), Ingeniería de Sistemas de la Universidad de Antioquia (Colombia) e Ingeniería en Informática de la Universidad Nacional Experimental del Táchira (Venezuela). Se toma de manera puntual la subdisciplina de Sistemas de Información de acuerdo con las recomendaciones de la Computing Curricula 2005 (CC2005) de la Association for Computing Machinery (ACM), la Association for Information Systems (AIS) y de la IEEE-Computer Society (IEEE-CS). Si bien el objetivo general es comparar las tres mallas curriculares de esas Carreras sobre la base de las ciencias básicas, básicas de ingeniería, formación profesional, formación complementaria y socio-humanístico, se propone conocer cómo se configuran y tensionan esas áreas entre sí y las condiciones que favorecen o no la formación de los ingenieros en un campo del saber con tantas exigencias a nivel global. Para el estudio se tomaron los planes de estudio y una encuesta autoadministrada a una muestra de egresados de las carreras en las tres universidades. Estas dimensiones de análisis permiten afirmar que los planes de estudio de tales carreras de Ingeniería se adecuan a los vertiginosos cambios de la época, si hay un flujo curricular más o menos flexible y que se posibilita en pro de un currículo más contextuado que vincule los saberes profesionales con una formación que garantiza una calidad del egresado.
DOI: 10.6084/m9.figshare.8275463
title: Supplementary Material for: Microbleeds after Carotid Artery Stenting: Small Embolism May Induce Cerebral Microbleeds

description: <b><i>Background:</i></b> Since the advent of magnetic resonance imaging technology, cerebral microbleeds can be diagnosed in vivo. However, the underlying mechanism of cerebral microbleed formation is not fully understood. <b><i>Objectives:</i></b> This study aimed to identify the factors associated with cerebral microbleeds after carotid artery stenting (CAS). <b><i>Method:</i></b> We retrospectively examined 125 patients who underwent CAS for carotid stenosis. Cerebral microbleeds were investigated using T2*-weighted gradient-echo (GRE) imaging before and after CAS. We analyzed the possible association of new microbleeds with the following risk factors: the number of baseline microbleeds and ischemic cerebral lesions, the occurrence of cerebral hyperperfusion syndrome, and new ischemic cerebral lesions after CAS. <b><i>Results:</i></b> Baseline cerebral microbleeds were detected in 53 patients (42.4%). New cerebral microbleeds after CAS were observed in 13 of 125 patients (10.4%) and were exclusively associated with new ischemic lesions but not with other risk factors. No patient showed a merged image of a new cerebral microbleed on GRE imaging or a new ischemic lesion on diffusion-weighted imaging. Lobar and deep microbleeds were noted in 12/13 (92.3%) and 1 patient (7.7%), respectively. Of 12 patients with new microbleeds, 10 (76.9%) and 2 (15.4%) had a new microbleed in the ipsilateral and contralateral hemispheres, respectively. <b><i>Conclusions:</i></b> We found that new cerebral microbleeds developed after CAS and that these might be associated with new ischemic lesions, mostly in the territory of the treated carotid artery. We speculate that these microbleeds result from the deoxygenation of hemoglobin in the embolus or, alternatively, small hemorrhagic transformation of ischemic lesions.
DOI: 10.6084/m9.figshare.8275496
title: WIsamples.correct.Final.map.recode.vcf

description: 180K SoyaSNP array genotype data for construction of genetic maps in WH, HI, WI, and II populations
DOI: 10.6084/m9.figshare.8275499.v2
title: Three new serine-protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) from extra-intestinal pathogenic <i>Escherichia coli</i> and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney

description: Serine protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) are secreted proteins that contribute to virulence and function as proteases, toxins, adhesins, and/or immunomodulators. An extra-intestinal pathogenic <i>E. coli</i> (ExPEC) O1:K1 strain, QT598, isolated from a turkey, was shown to contain <i>vat, tsh</i>, and three uncharacterized SPATE-encoding genes. Uncharacterized SPATEs: Sha (<i>S</i>erine-protease <i>h</i>emagglutinin <i>a</i>utotransporter), TagB and TagC (<i>t</i>andem <i>a</i>utotransporter <i>g</i>enes <i>B</i> and <i>C</i>) were tested for activities including hemagglutination, autoaggregation, and cytotoxicity when expressed in <i>E. coli</i> K-12. Sha and TagB conferred autoaggregation and hemagglutination activities. TagB, TagC, and Sha all exhibited cytopathic effects on a bladder epithelial cell line. In QT598, <i>tagB</i> and <i>tagC</i> are tandemly encoded on a genomic island, and were present in 10% of UTI isolates and 4.7% of avian <i>E. coli</i>. Sha is encoded on a virulence plasmid and was present in 1% of UTI isolates and 20% of avian <i>E. coli</i>. To specifically examine the role of SPATEs for infection, the 5 SPATE genes were deleted from strain QT598 and tested for cytotoxicity. Loss of all five SPATEs abrogated the cytopathic effect on bladder epithelial cells, although derivatives producing any of the 5 SPATEs retained cytopathic activity. In mouse infections, <i>sha</i> gene-expression was up-regulated a mean of sixfold in the bladder compared to growth <i>in vitro</i>. Loss of either <i>tagBC</i> or <i>sha</i> did not reduce urinary tract colonization. Deletion of all 5 SPATEs, however, significantly reduced competitive colonization of the kidney supporting a cumulative role of SPATEs for QT598 in the mouse UTI model.