cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17611/dp/20743826
title: Global ShakeMovie synthetic for January 01, 2023 MW 5.5 NEAR NORTH COAST OF IRIAN JAYA
DOI: 10.17611/dp/20743830
title: Global ShakeMovie synthetic for January 01, 2023 MW 5.8 SOUTHERN EAST PACIFIC RISE
DOI: 10.17611/dp/20743834
title: Global ShakeMovie synthetic for January 01, 2023 MW 5.4 NORTHERN CALIFORNIA
DOI: 10.17611/dp/20744582
title: Global ShakeMovie synthetic for December 27, 2022 MW 5.7 TONGA ISLANDS
DOI: 10.17611/dp/20745366
title: Global ShakeMovie synthetic for January 03, 2023 MW 5.4 BALLENY ISLANDS REGION
DOI: 10.17611/dp/20745370
title: Global ShakeMovie synthetic for January 03, 2023 MW 5.4 BALLENY ISLANDS REGION
DOI: 10.5061/dryad.305mq
title: Data from: Developmental constraints on behavioral flexibility

description: We suggest that variation in mammalian behavioural flexibility not
 accounted for by current socioecological models may be explained in part
 by developmental constraints. From our own work we provide examples of
 constraints affecting variation in behavioural flexibility, not only among
 individuals, but also among species and higher taxonomic units. We first
 implicate organizational maternal effects of androgens in shaping
 individual differences in aggressive behaviour emitted by female spotted
 hyenas throughout the lifespan. We then compare carnivores and primates
 with respect to their locomotor and craniofacial adaptations. We inquire
 whether antagonistic selection pressures on the skull might impose
 differential functional constraints on evolvability of skulls and brains
 in these two orders, thus ultimately affecting behavioural flexibility in
 each group. We suggest that, even when carnivores and primates would
 theoretically benefit from the same adaptations with respect to
 behavioural flexibility, carnivores may nevertheless exhibit less
 behavioural flexibility than primates because of constraints imposed by
 past adaptations in the morphology of the limbs and skull. Phylogenetic
 analysis consistent with this idea suggests greater evolutionary lability
 in relative brain size within families of primates than carnivores. Thus
 consideration of developmental constraints may help elucidate variation in
 mammalian behavioural flexibility.
description: fA_By_FecalAggressionData associated with this file show the relationship between maternal fecal androgen concentrations during gestation and rates of aggression emitted by female offspring produced from those pregnancies when offspring were adults (older than 24 months) toward their adult peers (n = 14).Species_details_for_analysisMammalian orders, suborders, families, genera, and species used in comparative analysis. Comparative analyses in paper include both the Moran's I phylogenetic signal analysis and the phylogenetic boxplots.
DOI: 10.5061/dryad.4p502
title: Data from: Adaptive walks and distribution of beneficial fitness effects

description: We study the adaptation dynamics of a maladapted asexual population on
 rugged fitness landscapes with many local fitness peaks. The distribution
 of beneficial fitness effects is assumed to belong to one of the three
 extreme value domains, viz. Weibull, Gumbel, and Fréchet. We work in the
 strong selection-weak mutation regime in which beneficial mutations fix
 sequentially, and the population performs an uphill walk on the fitness
 landscape until a local fitness peak is reached. A striking prediction of
 our analysis is that the fitness difference between successive steps
 follows a pattern of diminishing returns in the Weibull domain and
 accelerating returns in the Fréchet domain, as the initial fitness of the
 population is increased. These trends are found to be robust with respect
 to fitness correlations. We believe that this result can be exploited in
 experiments to determine the extreme value domain of the distribution of
 beneficial fitness effects. Our work here differs significantly from the
 previous ones that assume the selection coefficient to be small. On taking
 large effect mutations into account, we find that the length of the walk
 shows different qualitative trends from those derived using small
 selection coefficient approximation.
description: Simulation of adaptive
 walks on correlated fitness landscapesIn our simulations, the
 initial fitness of each block is chosen independently such that their
 average equals f_0. From then on, the adaptive proceeds until the fitness
 of all blocks reach local fitness peaks. Over 10^5 iterations, various
 quantities like average fitness difference between steps and the selection
 coefficient are calculated for the every step of the adaptive
 walk.Correlated_fitness_landscapes.cSimulation of adaptive walks on uncorrelated fitness landscapesStarting from fitness f_0, the adaptive walk proceeds as per the transition probability (4) in the manuscript until it reaches a local fitness peak. The average fitness difference, selection co-efficient and the walk length are averaged over 10^6 iterations.Uncorrelated_fitness_landscapes.c
DOI: 10.5061/dryad.05jb0
title: Data from: The ‘golden kelp’ Laminaria ochroleuca under global change: integrating multiple eco-physiological responses with species distribution models

description: 1. The loss of marine foundation species, in particular kelps at temperate
 latitudes, has been linked to climatic drivers and co-occurring human
 perturbations. Ocean temperature and nutrients typically co-vary over
 local and regional scales and play a crucial role on kelp dynamics.
 Examining their independent and interactive effects on kelp physiological
 performance is essential to understand and predict patterns of kelp
 distribution, particularly under scenarios of global change. 2. Crossed
 combinations of ocean temperatures and availability of nutrients were
 experimentally tested on juveniles of the ‘golden kelp’, Laminaria
 ochroleuca, from the northwestern Iberian Peninsula. Eco-physiological
 responses included: survival, growth and total N content. Results were
 embedded into a Species Distribution Model (SDM), which relates presence
 records and climatic and non-climatic data to forecast distribution
 patterns of L. ochroleuca under different climate change scenarios. 3.
 Temperatures above 24.6 ºC were lethal irrespective of nutrients. Optimal
 growth of juvenile sporophytes occurred between 12 °C and 18 ºC and no
 nutrient limitation. The SDM, where ocean temperature was the main
 predictor of kelp distribution in line with temperature thresholds given
 by eco-physiological responses, suggests a future expansion towards
 northern latitudes and a retreat from the southern limit/boundary of the
 current distribution. 4. Synthesis. Range-shifting of the golden kelp can
 have severe ecological impacts at regional and local scales. The expansion
 or retraction of the species along the European coast seems to be
 modulated mainly by temperature, but nutrient availability would be key to
 maintain optimal physiological performance. Our work highlights that the
 combination of empirical and modelling approaches is accessible to
 researchers and crucial to build more robust predictions of ecological and
 biogeographic responses of habitat-forming species to forecasted
 environmental change.
description: Franco et al_
 eco-physiological &SDMGrowth (g FW day-1) of
 L. ochroleuca sporophytes, according to experimental temperatures (12, 15,
 18, 20, 22, 24 º C) and nutrients availability (+, -), at 9, 18, 27 and 36
 days in relation to day 0.Lochroleuca_growth.csv
DOI: 10.5061/dryad.3qh1s
title: Data from: The elephants of Gash-Barka, Eritrea: nuclear and mitochondrial genetic patterns

description: Eritrea has one of the northernmost populations of African elephants. Only
 about 100 elephants persist in the Gash-Barka administrative zone.
 Elephants in Eritrea have become completely isolated, with no gene flow
 from other elephant populations. The conservation of Eritrean elephants
 would benefit from an understanding of their genetic affinities to
 elephants elsewhere on the continent and the degree to which genetic
 variation persists in the population. Using dung samples from Eritrean
 elephants, we examined 18 species-diagnostic single nucleotide
 polymorphisms in 3 nuclear genes, sequences of mitochondrial HVR1 and ND5,
 and genotyped 11 microsatellite loci. The sampled Eritrean elephants
 carried nuclear and mitochondrial DNA markers establishing them as savanna
 elephants, with closer genetic affinity to Eastern than to North Central
 savanna elephant populations, and contrary to speculation by some scholars
 that forest elephants were found in Eritrea. Mitochondrial DNA diversity
 was relatively low, with 2 haplotypes unique to Eritrea predominating.
 Microsatellite genotypes could only be determined for a small number of
 elephants but suggested that the population suffers from low genetic
 diversity. Conservation efforts should aim to protect Eritrean elephants
 and their habitat in the short run, with restoration of habitat
 connectivity and genetic diversity as long-term goals.
description: BrandtAL_JoH_2014-DryadEritrean elephant genotypes from 11 loci
DOI: 10.5061/dryad.86k9b
title: Data from: The evolutionary puzzle of egg size, oxygenation and parental care in aquatic environments

description: Offspring fitness generally improves with increasing egg size. Yet, eggs
 of most aquatic organisms are small. A common but largely untested
 assumption is that larger embryos require more oxygen than they can
 acquire through diffusion via the egg surface, constraining egg size
 evolution. However, we found no detrimental effects of large egg size on
 embryo growth and survival under hypoxic conditions. We tested this in the
 broad-nosed pipefish, Syngnathus typhle, whose males provide extensive
 care (nourishment, osmoregulation and oxygenation) to their young in a
 brood pouch on their bodies. We took advantage of this species'
 pronounced variation in egg size, correlating positively with female size,
 and tested the effect of hypoxia (40% dissolved oxygen) versus fully
 oxygenated (100%) water on embryo size and survival of large versus small
 eggs after 18 days of paternal brooding. Egg size did not affect embryo
 survival, regardless of O2 treatment. While hypoxia affected embryo size
 negatively, both large and small eggs showed similar reductions in growth.
 Males in hypoxia ventilated more and males with large eggs swam more, but
 neither treatment affected their position in the water column. Overall,
 our results call into question the most common explanation for constrained
 egg size evolution in aquatic environments.
description: Effects of egg size and
 oxygen treatment on embryo mortality and average embryo size in the
 broad-nosed pipefishBragaGoncalvesetalProcB_datafile1.csv contains the data used for the analysis of the effects of egg size and oxygen treatment on embryo mortality and average embryo size in the pipefish Syngnathus typhle.BragaGoncalvesetalProcB_datafile1.csvEffects of egg size and oxygen treatment on brooding male behaviour and ventilation rates in the broad-nosed pipefishBragaGoncalvesetalProcB_datafile2.csv contains the data used for the analysis of the effects of egg size and oxygen treatment on brooding male behaviour and ventilation rates in the pipefish Syngnathus typhle.BragaGoncalvesetalProcB_datafile2.csv
DOI: 10.5061/dryad.t34k1
title: Data from: Direct fitness benefits and kinship of social foraging groups in an Old World tropical babbler

description: Molecular studies have revealed that social groups composed mainly of
 non-relatives may be widespread in group-living vertebrates, but the
 benefits favoring such sociality are not well understood. In the Old
 World, birds often form conspecific foraging groups that are maintained
 year-round and offspring usually disperse to other social groups. We
 tested the hypothesis that non-breeding group members are largely
 unrelated and gain direct fitness benefits through breeding opportunities
 (males) and brood parasitism (females) in the tropical grey-throated
 babbler, Stachyris nigriceps, in Malaysian Borneo. Babblers foraged in
 social groups containing one or more breeding pairs (median = 8 group
 members of equal sex ratio), but group members rarely assisted with
 breeding (9% of 67 breeding pairs had a third helper; exhibiting
 facultative cooperative breeding). Although 20% of 266 group member dyads
 were first-order relatives of one or both members of the breeding pairs,
 80% were unrelated. Male group members gained direct fitness benefits
 through extra-pair and extra-group paternity (25% of 73 offspring), which
 was independent of their relatedness to the breeding pair and increased
 with decreasing group size. In contrast, females did not gain direct
 fitness benefits through brood parasitism. The low levels of relatedness
 and helping in social groups suggest that most group members do not gain
 indirect fitness benefits by helping to raise unrelated offspring. These
 findings highlight the importance of examining benefits of sociality for
 unrelated individuals that largely do not help and broaden the direct
 fitness benefits of group foraging beyond assumed survival benefits.
description: Model
 1Probability of a male
 group member siring extra-pair young based on relatedness to male breeder,
 group member size, and sex ratio of group members.ProbEPY_GTBA_malerelatedness_groupsize_sexratio_indiv.csvModel 2Probability of a male group member siring extra-pair young based on relatedness to female breeder, group member size, and sex ratio of group membersProbEPY_GTBA_femalerelatedness_groupsize_sexratio_indiv.csvModel 3Fisher's exact test: testing whether extra-pair young in a brood is independent of presence of related male group member to male breederProbEPY_GTBA_relatedness_groupsize_sexratio_group.csv
DOI: 10.5061/dryad.fh319v3
title: Data from: Biomechanical factors influencing successful self-righting in the pleurodire turtle, Emydura subglobosa

description: Self-righting performance is a key ability for most terrestrial animals,
 and has been used as a metric of fitness, exhaustion, and thermal limits
 in a variety of taxa. However, there is little understanding of the
 underlying mechanisms that drive variation in self-righting performance.
 To evaluate the mechanical factors that contribute to success versus
 failure when animals attempt to self-right, we compared force production
 and kinematic behavior in the rigid-bodied, pleurodire turtle Emydura
 subglobosa between successful and unsuccessful self-righting efforts. We
 found that the moment exerted during efforts to roll the body, and the
 velocity of that roll, are the primary drivers behind self-righting
 success (i.e., turtles that self-righted successfully produced both larger
 moments and faster rolls than turtles that failed). In contrast, the angle
 at which the head was directed to lever the body, and the extent of yaw
 that was incorporated in addition to roll, had little impact on the
 likelihood of success. These results show that specific performance
 metrics can predict the ability of animals to self-right, providing a
 framework for biomimetic applications as well future comparisons to test
 for differences in self-righting performance across animals from different
 environments, sexes, populations, and species.
description: Data used in statistical
 analysisData used for
 statistical analysis.Rubinetal_data.csv
DOI: 10.5061/dryad.m2v3ns6
title: Data from: Mating system shifts a species’ range

description: Understanding the ecological and evolutionary mechanisms that shape a
 species’ range is an important goal in evolutionary biology. Evidence
 indicates that mating system is an effective predictor of the global range
 of native species or naturalized alien plants, but the mechanisms
 underlying this predictability are not elaborated. Here, we develop a
 theoretical model to account for the ranges of plants under different
 mating systems based on migration-selection processes (an idea proposed by
 Haldane). The model includes alternation of gametophyte and sporophyte
 generations in one life cycle and the dispersal of haploid pollen and
 diploid seeds as vectors for gene flow. We show that the interaction
 between selfing rates and gametophytic selection determines the role of
 mating system in shaping a species’ range. Selfing restricts the species’
 range under gametophytic selection in non-random mating systems, but
 expands the species’ range under the absence of gametophytic selection in
 any mating system. Gametophytic selection slightly restricts the species’
 range in random mating. Both logarithmic and logistic models of population
 demography yield similar conclusions in the case of fixed or evolving
 genetic variance. The theory also helps to explain a broader relationship
 between mating system and range size following biological invasion or
 plant naturalization.
description: Scripts used in the
 simulationsScripts in C language
 used for simulations include five programs. Each file name shows which
 figure in the paper was produced by this program. Parameter settings in
 the source codes of each program are explained in detail so that readers
 can change parameter values to simulate different
 scenarios.programs.rar
DOI: 10.5061/dryad.720
title: Data from: Phylogenetic covariance probability: confidence and historical associations

description: The correlation that exists among multiple cladograms is often taken as
 evidence of some underlying macroevolutionary phenomenon common to the
 histories of those clades and, thus, as an explanation of the patterns of
 association of the constituent taxa. Such studies have various forms, the
 most common of which are cladistic biogeography and host--parasite
 coevolution. The issue of confidence has periodically been a theoretical
 consideration of vicariance biogeographers but in practice has been
 largely ignored by others. Previous approaches to assessing confidence in
 historical associations are examined here in relation to the difference
 between simple-event and cumulative probabilities and in relation to the
 restrictiveness of joint hypothesis testing. The phylogenetic covariance
 probability (PCP) test, a novel approach to assessing confidence in
 hypotheses of historical association, employs the empirical protocol of
 Brooks parsimony analysis (BPA) in an iterative, computer-intensive
 randomization routine. The PCP value consists of the frequency with which
 a solution as efficient or more efficient than the observed hypothesis of
 correlated phylogeny is achieved with random associations (e.g., of
 parasites and hosts or of taxa and areas). Because only the associations,
 and not the contributing phylogenies, are subjected to randomization, the
 test is not prone to certain criticisms leveled at other cladistic
 randomization routines. The behavior of the PCP test is examined in
 relation to eight published studies of historical association. This test
 is appropriately sensitive to the degrees of freedom allowed by the number
 of contributing clades and the number of taxa in those clades, to the
 extent of noncorrelated associations in the observed hypothesis, and to
 the relative information content contributing to that hypothesis.
description: Siddall
 Appendixsiddall.append.1
DOI: 10.5061/dryad.nr4k8
title: Data from: Hepatotoxicity of isotretinoin in patients with acne and Gilbert's syndrome: comparative study

description: Objectives: The objective of our follow-up study is to evaluate liver
 function tests (LFTs) and lipid profiles in patients with Gilbert's
 syndrome treated with isotretinoin because of severe acne. Setting:
 Dermatology outpatient clinics of three regional hospitals of Jaén
 (Spain). Participants: Over 4 years, we included all patients diagnosed
 with severe acne. Only 37 patients were identified, of which 11 had
 Gilbert's syndrome. Interventions: All patients were treated with
 isotretinoin and followed-up in our outpatient clinics after 10 and
 20 weeks. Patients were subjected to an interview questionnaire which
 included data on age, gender, complete blood count, coagulation profile,
 fasting blood glucose, LFTs and lipid profiles. Data and results of
 patients with severe acne and Gilbert's syndrome were compared with
 those of 26 patients with only severe acne (control group). Primary:
 outcome Blood analyses were repeated in the follow-up visits. Results: In
 patients with Gilbert's syndrome, bilirubin levels showed substantial
 decrease over the 20-week follow-up, with more decrease after 10 weeks.
 None of the control group patients had significant increase in total
 bilirubin levels after 10 and 20 weeks of follow-up. Liver enzymes were
 maintained within normal levels in both groups. Both study groups did not
 show significant pathological increase in lipid profile levels. LDL levels
 were increased in the two study groups, but this increase was less
 substantial in patients with Gilbert's syndrome. Conclusions: Our
 preliminary results suggest that oral isotretinoin could be an effective,
 safe treatment for patients with Gilbert's syndrome, and may lower
 bilirubin levels in the first 10 weeks of treatment. Limitations of the
 study include the small numbers of participants and the fact that it is
 restricted to one region of Spain.
description: Hepatotoxicity of
 Isotretinoin and Gilbert's syndromeSPSS
DOI: 10.5061/dryad.49n3878
title: Data from: Social structure contains epidemics and regulates individual roles in disease transmission in a group-living mammal

description: Population structure is critical to infectious disease transmission. As a
 result, theoretical and empirical contact networks models of infectious
 disease spread are increasingly providing valuable insights into wildlife
 epidemiology. Analysing an exceptionally detailed data set on contact
 structure within a high-density population of European badgers Meles
 meles, we show that a modular contact network produced by spatially
 structured stable social groups, lead to smaller epidemics, particularly
 for infections with intermediate transmissibility. The key advance is that
 we identify considerable variation among individuals in their role in
 disease spread, with these new insights made possible by the detail in the
 badger data set. Furthermore, the important impacts on epidemiology are
 found even though the modularity of the badger network is much lower than
 the threshold that previous work suggested was necessary. These findings
 reveal the importance of stable social group structure for disease
 dynamics with important management implications for socially-structured
 populations.
description: Network