cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/14170919.v2
title: Supporting dataset for the paper: Does load-induced shallow subsidence inhibit delta growth?

description: This is the supporting dataset for “Chamberlain, E.L., Shen, Z., Kim, W., Törnqvist, T.E., McKinley, S., & Anderson, S. Does load-induced shallow subsidence inhibit delta growth? In prep for Journal of Geophysical Research - Earth Surface”. Estimated submission date: March, 2021.<br>The dataset includes stratigraphic information for boreholes of ten cross sections that were hand drilled from 2013-2015 CE in the bayhead region of the Lafourche subdelta, Mississippi Delta, USA. The study area spans ~6000 km2 and the cross sections are located near distributary channels. Data herein describe the location, surface elevation, and depth of each borehole as well as the depth relative to the surface of the mouth-bar to overbank (M-O) boundary and OSL ages for the mouth-bar deposits.<br>We used these data to estimate centennial- to millennial-timescale cumulative subsidence and subsidence rates of a buried stratigraphic horizon, the M-O boundary, as detailed in the associated publication. Subsidence calculation methods are presented in the dataset, and subsidence data obtained from peat-top elevations at a relatively inland site (Paincourtville, LA, USA) are presented for comparison.
DOI: 10.4121/14339009.v1
title: Data underlying the research on "Comprehensibility of Risk Modeling Notations (Effect of Search Availability)"

description: This dataset contains results of a controlled experiment with students in TU Delft on September 10, 2018 on the comprehensibility of tabular and graphical risk model representations. The dataset contains the raw data collected with iSurvey survey platform, the dataset processed with responses validated against a baseline of correct responses.<br><br>This research project was reviewed and approved by the Human Research Ethics Committee of the Delft University of Technology (reference number: 489).<br>
DOI: 10.4121/14339009
title: Data underlying the research on "Comprehensibility of Risk Modeling Notations (Effect of Search Availability)"

description: This dataset contains results of a controlled experiment with students in TU Delft on September 10, 2018 on the comprehensibility of tabular and graphical risk model representations. The dataset contains the raw data collected with iSurvey survey platform, the dataset processed with responses validated against a baseline of correct responses.<br><br>This research project was reviewed and approved by the Human Research Ethics Committee of the Delft University of Technology (reference number: 489).<br>
DOI: 10.4121/14318822.v1
title: Terrestrial Laser Scan point cloud of the Oude Kerk, Delft, The Netherlands

description: Point cloud of the church tower of the Oude Kerk, Delft, made using the Leica P40 Terrestrial Laser Scanner. Consists of 6 registered scans from different positions. XYZ coordinates and intensity of the return signal.<br><br>This dataset was collected on February 23, 2019 for the course "CIE4614 3D Surveying of Civil and Offshore Infrastructure" at the Faculty of Civil Engineering and Geosciences.
DOI: 10.4121/14318822
title: Terrestrial Laser Scan point cloud of the Oude Kerk, Delft, The Netherlands

description: Point cloud of the church tower of the Oude Kerk, Delft, made using the Leica P40 Terrestrial Laser Scanner. Consists of 6 registered scans from different positions. XYZ coordinates and intensity of the return signal.<br><br>This dataset was collected on February 23, 2019 for the course "CIE4614 3D Surveying of Civil and Offshore Infrastructure" at the Faculty of Civil Engineering and Geosciences.
DOI: 10.4121/uuid:b7aac156-73d4-4b62-bad4-508c95de8331
title: Meteo measurements at the Sand Motor

description: Meteo measurements at the Sand Motor. Air temperature, humidity, pressure, solar radiation, precipitation, wind speed and wind direction are measured.
DOI: 10.4121/12713645.v2
title: Meteo measurements at the Sand Motor

description: Meteo measurements at the Sand Motor. Air temperature, humidity, pressure, solar radiation, precipitation, wind speed and wind direction are measured. Contributor: Verheijen, A.H. (Anne) [orcid:0000-0002-2131-7619]
DOI: 10.4121/12713645
title: Meteo measurements at the Sand Motor

description: Meteo measurements at the Sand Motor. Air temperature, humidity, pressure, solar radiation, precipitation, wind speed and wind direction are measured. Contributor: Verheijen, A.H. (Anne) [orcid:0000-0002-2131-7619]
DOI: 10.4121/14292383.v1
title: Data underlying the publication: Computationally guided in-vitro vascular growth model reveals causal link between flow oscillations and disorganized neotissue

description: This repository contains the data and scripts required to reproduce the subfigures of figure 2 of: van Haaften et al 2021 "Computationally guided in-vitro vascular growth model reveals causal link between flow oscillations and disorganized neotissue" related to the computational simulations. <br><br>More specifically, this repository contains:1) Datasets to visualize the time-averaged wall shear stress (TAWSS), oscillatory shear index (OSI) and the strain (ε) in graft at the venous anastomosis in Paraview. <br>2) Scripts and data to produce histograms of the time-averaged wall shear stress (TAWSS), oscillatory shear index (OSI) and the strain (ε) in the graft at the venous anastomosis in MATLAB<br>
DOI: 10.4121/14292383
title: Data underlying the publication: Computationally guided in-vitro vascular growth model reveals causal link between flow oscillations and disorganized neotissue

description: This repository contains the data and scripts required to reproduce the subfigures of figure 2 of: van Haaften et al 2021 "Computationally guided in-vitro vascular growth model reveals causal link between flow oscillations and disorganized neotissue" related to the computational simulations. <br><br>More specifically, this repository contains:1) Datasets to visualize the time-averaged wall shear stress (TAWSS), oscillatory shear index (OSI) and the strain (ε) in graft at the venous anastomosis in Paraview. <br>2) Scripts and data to produce histograms of the time-averaged wall shear stress (TAWSS), oscillatory shear index (OSI) and the strain (ε) in the graft at the venous anastomosis in MATLAB<br>
DOI: 10.4121/14307743
title: Dataset underlying the research on physical fatigue detection in running using inertial measurement units (IMUs)

description: This dataset contains data collected during fatigue detection experiments in running using IMUs.Subjects underwent a fatiguing protocol consisting of three distinct consecutive runs on an athletic track:1. The first run consisted of a 4000 m run (10 laps) at a constant speed, determined as 100% of the average speed of the subject during the best performance in the previous year on a 5 to 10 km race;2. The second run was performed according to a fatiguing protocol. The speed in this fatiguing protocol started at the same level of the first run and increased progres-sively of by 0.2km/h every 100 m. Perceived fatigue was assessed by means of a Borg Rating of Perceived Extertion (RPE) Scale (min-max score 6-20) [20], asked to the runner every 100 m. The fatiguing protocol was terminated once the RPE was higher than 16 (RPE between hard and very hard) , or, if such requirement was not met, after 1200m;3. The third run consisted of a 1200m run (3 laps), in which speed was kept constant and equal to the first 4000 m run.<br><br>pXXX_XXX_0-2K: contains the Segment and Joint data exported from MVN for the first half of the first runpXXX_XXX_2-4K: contains the Segment and Joint data exported from MVN for the second half of the first runpXXX_XXX_postfatigue1200m: : contains the Segment and Joint data exported from MVN for the third run<br>pXXX_strides: contains the segmented strides from each subject<br><br>TableFeats: contains values used for the machine learning pipeline, after normalization over each single subject
DOI: 10.4121/14316587.v1
title: Resulting data of Design of Experiments and optimisations of space layout design to improve the building energy performance

description: A Design of Experiments was run to identify the relationship between design indicators of space layout and energy demands. Two round of optimisation were run to identify how much energy can be saved by space layout design. One round included 3 single-objective optimisations for minimising heating, cooling and lighting demands separatly; one round included only 1 multi-objective optimisation for minimising heating, cooling and lighting demands together.<br>This dataset contains data resulted from the work performed during Oct 2020-Jan 2021,at Delft University of Technology, as part of Tiantian Du's PhD Thesis project.<br>
DOI: 10.4121/14316587
title: Resulting data of Design of Experiments and optimisations of space layout design to improve the building energy performance

description: A Design of Experiments was run to identify the relationship between design indicators of space layout and energy demands. Two round of optimisation were run to identify how much energy can be saved by space layout design. One round included 3 single-objective optimisations for minimising heating, cooling and lighting demands separatly; one round included only 1 multi-objective optimisation for minimising heating, cooling and lighting demands together.<br>This dataset contains data resulted from the work performed during Oct 2020-Jan 2021,at Delft University of Technology, as part of Tiantian Du's PhD Thesis project.<br>
DOI: 10.4121/14316119
title: Simulation results to identify the isolated effect of space layout on the building energy performance in 3 climates

description: This dataset contains data resulted from the simulation, perfromed during Nov 2020-Dec 2020,at Delft University of Technology, as part of Tiantian Du's PhD Thesis project.This part of work was published in a paper titled as Effect of space layouts on the energy performance of office buildings in three climates, with DOI: 10.1016/j.jobe.2021.102198.<br><br>11 layouts were simulated for their energy demands, in order to identify the effect of space layout on building energy performance. Also sensitivity analysis was run for the same 11 layouts, with different WWRs and U values. <br>
DOI: 10.4121/14221724.v1
title: Data underlying the research of OperationAIR, hardware and software design.

description: OperationAIR is a student team of Delft University of Technology that developed a simplified ventilator: the AIRone. It was developed as a non-certified, advanced emergency ventilator at times of a national shortage due to the covid-19 pandemic, in close contact with experts from Leiden University Medical Center and Erasmus Medical Center. This repository contains the hardware and software design data that can be used to recreate the project. Further more, the various documents developed for the ventilator including the user manual, technical and design specifications and lessons learnt are also archived herewith. This resource intends to give other researchers a head start on their design process. The files give an insight in the process and can prevent you from repeating the same mistakes.
DOI: 10.4121/14221724
title: Data underlying the research of OperationAIR, hardware and software design.

description: OperationAIR is a student team of Delft University of Technology that developed a simplified ventilator: the AIRone. It was developed as a non-certified, advanced emergency ventilator at times of a national shortage due to the covid-19 pandemic, in close contact with experts from Leiden University Medical Center and Erasmus Medical Center. This repository contains the hardware and software design data that can be used to recreate the project. Further more, the various documents developed for the ventilator including the user manual, technical and design specifications and lessons learnt are also archived herewith. This resource intends to give other researchers a head start on their design process. The files give an insight in the process and can prevent you from repeating the same mistakes.
DOI: 10.4121/14307704.v1
title: Timeseries data of a drive cycle aging test of 28 high energy NCA/C+Si round cells of type 18650

description: This dataset contains timeseries data (time, current, voltage, temperature) of a drive cycle aging test of 28 18650 high energy NCA/C+Si round cells. The aging test was conducted with all cells at the same aging condition at room temperature. The cells were cycled individually but with the same profile. They were charged with a CCCV regime and discharged using a recorded drive cycle profile. Regular check-ups every 30 cycles are also included in the data. <br>
DOI: 10.4121/14307704
title: Timeseries data of a drive cycle aging test of 28 high energy NCA/C+Si round cells of type 18650

description: This dataset contains timeseries data (time, current, voltage, temperature) of a drive cycle aging test of 28 18650 high energy NCA/C+Si round cells. The aging test was conducted with all cells at the same aging condition at room temperature. The cells were cycled individually but with the same profile. They were charged with a CCCV regime and discharged using a recorded drive cycle profile. Regular check-ups every 30 cycles are also included in the data. <br>
DOI: 10.4121/14308007.v1
title: Data underlying research on engineering oxygen-independent biotin biosynthesis in Saccharomyces cerevisiae

description: An oxygen requirement for <i>de novo</i> biotin synthesis in <i>Saccharomyces cerevisiae</i> precludes the application of biotin-prototrophic strains in anaerobic processes that use biotin-free media. To overcome this issue, this study explores introduction of the oxygen-independent <i>Escherichia coli</i> biotin-biosynthesis pathway in <i>S. cerevisiae</i>. Implementation of this pathway required expression of seven <i>E. coli </i>genes involved in fatty-acid synthesis and three <i>E. coli </i>genes essential for the formation of a pimelate thioester, a key precursor of biotin synthesis. A yeast strain expressing these genes readily grew in biotin-free medium, irrespective of the presence of oxygen. However, the engineered strain exhibited lower specific growth rates in biotin-free media than in biotin-supplemented media. Following adaptive laboratory evolution in anaerobic cultures, evolved cell lines that no longer showed this growth difference were characterized by genome sequencing and proteome analyses. The evolved isolates exhibited several genomic rearrangements, including a whole-genome duplication, which caused alterations in the relative gene dosages of biosynthetic pathway genes. These alterations resulted in a reduced abundance of the enzymes catalyzing the first three steps of the <i>E. coli</i> biotin pathway. The evolved pathway configuration was reverse engineered in the diploid industrial <i>S. cerevisiae </i>strain Ethanol Red. The resulting strain grew at nearly the same rate in biotin-supplemented and biotin-free media. This study established the first genetic engineering strategy to enable biotin-independent anaerobic growth of <i>S. cerevisiae</i> and demonstrated its portability in industrial strain backgrounds.
DOI: 10.4121/14308007
title: Data underlying research on engineering oxygen-independent biotin biosynthesis in Saccharomyces cerevisiae

description: An oxygen requirement for <i>de novo</i> biotin synthesis in <i>Saccharomyces cerevisiae</i> precludes the application of biotin-prototrophic strains in anaerobic processes that use biotin-free media. To overcome this issue, this study explores introduction of the oxygen-independent <i>Escherichia coli</i> biotin-biosynthesis pathway in <i>S. cerevisiae</i>. Implementation of this pathway required expression of seven <i>E. coli </i>genes involved in fatty-acid synthesis and three <i>E. coli </i>genes essential for the formation of a pimelate thioester, a key precursor of biotin synthesis. A yeast strain expressing these genes readily grew in biotin-free medium, irrespective of the presence of oxygen. However, the engineered strain exhibited lower specific growth rates in biotin-free media than in biotin-supplemented media. Following adaptive laboratory evolution in anaerobic cultures, evolved cell lines that no longer showed this growth difference were characterized by genome sequencing and proteome analyses. The evolved isolates exhibited several genomic rearrangements, including a whole-genome duplication, which caused alterations in the relative gene dosages of biosynthetic pathway genes. These alterations resulted in a reduced abundance of the enzymes catalyzing the first three steps of the <i>E. coli</i> biotin pathway. The evolved pathway configuration was reverse engineered in the diploid industrial <i>S. cerevisiae </i>strain Ethanol Red. The resulting strain grew at nearly the same rate in biotin-supplemented and biotin-free media. This study established the first genetic engineering strategy to enable biotin-independent anaerobic growth of <i>S. cerevisiae</i> and demonstrated its portability in industrial strain backgrounds.
DOI: 10.4121/12971528.v1
title: Data underlying the publication: Chitin- and keratin-rich soil amendments suppress Rhizoctonia solani disease via changes to the soil microbial community

description: Microbial and chemical-physical data from soil samples treated with ten organic products were selected to assess their potential to enhance disease suppression in soil. After the products were amended into two different arable soils, pot experiments were performed to assess soil suppressiveness against the fungal pathogen Rhizoctonia solani. In addition, several soil characteristics were analyzed, as well as the bacterial and fungal community composition and how microorganisms interact within these communities, to better understand the effect of the organic amendments on creating disease suppressive soils.<br>
DOI: 10.4121/12971528.v2
title: Data underlying the publication: Chitin- and keratin-rich soil amendments suppress Rhizoctonia solani disease via changes to the soil microbial community

description: Microbial and chemical-physical data from soil samples treated with ten organic products were selected to assess their potential to enhance disease suppression in soil. After the products were amended into two different arable soils, pot experiments were performed to assess soil suppressiveness against the fungal pathogen Rhizoctonia solani. In addition, several soil characteristics were analyzed, as well as the bacterial and fungal community composition and how microorganisms interact within these communities, to better understand the effect of the organic amendments on creating disease suppressive soils.<br>
DOI: 10.4121/12971528
title: Data underlying the publication: Chitin- and keratin-rich soil amendments suppress Rhizoctonia solani disease via changes to the soil microbial community

description: Microbial and chemical-physical data from soil samples treated with ten organic products were selected to assess their potential to enhance disease suppression in soil. After the products were amended into two different arable soils, pot experiments were performed to assess soil suppressiveness against the fungal pathogen Rhizoctonia solani. In addition, several soil characteristics were analyzed, as well as the bacterial and fungal community composition and how microorganisms interact within these communities, to better understand the effect of the organic amendments on creating disease suppressive soils.<br>
DOI: 10.4121/14174759.v1
title: Acoustic Bubble Dynamics in a Yield-Stress Fluid : Resonance Curve and Acoustic Radiation Force Data

description: A compilation of data on bubble oscillations in a model Carbopol gel. Bubbles are excited using an ultrasound transducer. <br><br>Here, data are for single bubbles. No shape oscillations were investigated. We did a nicely resolved resonance curve and some acquisitions in an acoustic pressure gradient<br>
DOI: 10.4121/14174759.v2
title: Acoustic Bubble Dynamics in a Yield-Stress Fluid : Raw Data

description: A compilation of data on bubble oscillations in a model Carbopol gel. Bubbles are excited using an ultrasound transducer. <br><br>Here, data are for single bubbles. We did a nicely resolved resonance curve (2019/08/15 - Bubble 1) and some acquisitions in an acoustic pressure gradient (2019/08/15 - Bubbles 2 to 6) and an investigation of shape oscillations (2019/10/10)<br>
DOI: 10.4121/14174759
title: Acoustic Bubble Dynamics in a Yield-Stress Fluid : Raw Data

description: A compilation of data on bubble oscillations in a model Carbopol gel. Bubbles are excited using an ultrasound transducer. <br><br>Here, data are for single bubbles. We did a nicely resolved resonance curve (2019/08/15 - Bubble 1) and some acquisitions in an acoustic pressure gradient (2019/08/15 - Bubbles 2 to 6) and an investigation of shape oscillations (2019/10/10)<br>
DOI: 10.4121/14236922
title: Data underlying the publication: nZVI impacts substrate conversion and microbiome composition in lactate-based chain elongation from D- and L-lactate substrates

description: Medium-chain carboxylates (MCC) derived from biomass biorefining are attractive biochemicals to uncouple the production of a wide array of products from the use of non-renewable sources. Biological conversion of biomass-derived lactate during secondary fermentation can be steered to produce a variety of MCC through chain elongation. We explored the effects of zero-valent iron nanoparticles (nZVI) and lactate enantiomers on substrate consumption, product formation and microbiome composition in batch lactate-based chain elongation.
DOI: 10.4121/14115461.v1
title: Data underlying the publication: Phytophthora pathogens exploit slicing action for host invasion

description: Host entry requires plant pathogens to breach the protective surface of the plant. <i>Phytophthora </i>species, classified as oomycetes, are among the most destructive filamentous plant pathogens worldwide and pose a substantial threat to food security. Little is known about the biomechanics of host invasion in oomycetes, yet this understanding is crucial to combat these pathogens more effectively. Here we unveil how <i>Phytophthora</i> spp. invade elastic surfaces by pressure application at an oblique angle without appressorium formation. This ‘slicing’ action, coined the <i>naifu</i>-mechanism, facilitates crack initiation by concentrating stresses towards the surface enabling host entry through the crack void. This contrasts the ‘brute’ force approach found in fungal filamentous plant pathogens capable of producing a melanized appressorium that generates tremendous turgor pressures. Measurements of surface deformations during invasion reveal an asymmetric geometry of decoupled adherence and indentation sites that is quantitatively described with a mathematical model. Moreover, we establish how polarized growth, surface adherence and turgor generation are each essential to accomplish host entry by this approach. The naifu-mechanism enables <i>Phytophthora </i>pathogens to penetrate their hosts without necessitating specialized pressure organs and vast turgor pressures. <b></b>