cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24089633.v1
title: Precipitation as a key control on erosion rates in the tectonically inactive northeastern Sonoran Desert, central Arizona, USA

description:  Langbein and Schumm (1958) connected precipitation to erosion in a right-skewed curve used in earth science textbooks for over six decades, where denudation increases with precipitation on the arid/semiarid limb and decreases in humid regions. Development of the catchment-averaged <sup>10</sup>Be denudation method a quarter-century ago led geomorphologists to evaluate this hypothesis using data not influenced by the Anthropocene, with mixed findings. The Sonoran Desert in Arizona, USA, is optimal for investigating the longstanding hypothesis of increased erosion from arid to semiarid climates due to: (i) the modern orographic effect aligning elevated precipitation with altitude, mirroring <i>Neotoma</i> packrat midden paleoecology research for the Holocene and late Pleistocene; (ii) the region has been tectonically quiet for the residence times of analyzed <sup>10</sup>Be ranging from ca. 8,000-110,000 years. Our significant finding echoes Langbein and Schumm's work, revealing heightened erosion along an elevation-precipitation gradient from arid to semiarid conditions. Notably, the significance of precipitation-elevation contrasts with the absence of significant correlation between <sup>10</sup>Be denudation and attributes like slope, drainage area, relief, or landform type (e.g., alluvial fan, pediment, mountain watershed). Modern faunalturbation, increasing along this gradient, exposes more ground to rainsplash and overland flow at higher elevations, adding complexity to these results. Further insights unveil that (i) catchments in areas with substantial Quaternary base level reduction imitate tectonic effects, tripling <sup>10</sup>Be denudation rates; (ii) basaltic boulders and cobbles yield an armoring influence; (iii) historical erosion acceleration due to urbanization and wildfires insignificantly affects <sup>10</sup>Be denudation rates in the Sonoran Desert; and (iv) minute desert catchments yield anomalous erosion rates.
DOI: 10.18112/openneuro.ds004907.v1.1.2
title: RestHoldMove
DOI: 10.34740/kaggle/dsv/7350080
title: MNIST Linear Multidigit Dataset
DOI: 10.5281/zenodo.10469444
title: Polarisation camera PAINT movie of single Nile red dyes binding to lipid bilayer-coated silica microspheres

description: This PAINT dataset is a movie of the fluorescence of single Nile red molecules reversibly binding to a lipid bilayer (DPPC + 40% cholesterol) on a 5 μm diameter silica microsphere (44054-5ML-F, Sigma-Aldrich). Images were recorded at 3 different focal planes; approximately at the midpoint of the bead (z1), the top of the bead (z3) and a position in between (z2).

The data was collected on a fluorescence microscope (Eclipse Ti2, Nikon) with a polarisation camera (CS505MUP, Thorlabs). The molecules were excited with a 514 nm DPSS laser with a measured power density at the sample plane of 6.08 kW/cm^2. An exposure time of 50 ms was used. The following filters were used: dichroic (Di03-R514-t1, Semrock) and emission filter (FF01-515/LP and FF01-650/200, Semrock).
DOI: 10.5287/ora-rv8ar2gx8
title: Regional groundwater flow system characterization of volcanic aquifers in upper Awash using multiple approaches, central Ethiopia

description: Characterization of the groundwater flow systems is important for sustainable water resource management decision-making. We have used vertical profiles of electrical conductivity (EC) and water temperature taken at 2 m intervals during drilling of 109 boreholes, and samples for stable isotope analysis (δ18O, δ2H) taken from 47 boreholes to characterize groundwater recharge, flow and discharge in the Upper Awash sub-basin, central Ethiopia. 222Rn measurements and piezometric evidence were used to complement results from the EC and stable isotopes. The converging evidence shows that groundwater in the study area is characterized by a mix of two different groundwater flow systems: i) the deep groundwater systems are connected to the regional groundwater flow originating from the highlands, outside the surface water basin, ii) the shallow groundwater systems get recharge from local rains. The local recharge zones are located in highly urbanized and industrialized zones posing risk to recharge reduction and pollution. Therefore, attention should be given to protect groundwater resources from contamination and increase groundwater resilience to climate change. This dataset was collected under research conducted within the REACH programme - reachwater.uk - between 14/04/2021 and 31/03/2022.
DOI: 10.6073/pasta/818789a882a318c1d7f3fc43a2289e12
title: Harvard Forest CTFS-ForestGEO Mapped Forest Plot since 2014

description: To investigate the forest dynamics across a larger range of scales in which many processes operate, Harvard Forest (HF) researchers, with assistance from the Center for Tropical Forest Science (CTFS) and the Smithsonian Institute’s Forest Global Earth Observatory (ForestGEO), completed an initial census of all woody stems within a 35 ha plot located at the Harvard Forest in 2014. The HF MegaPlot is part of a global array of large-scale plots established by CTFS whose goals are to increase sampling efforts into temperate forests to explore ecosystem processes beyond population dynamics and biodiversity. The geography and size of the HF MegaPlot (500 m x 700 m) is designed to include a continuous, expansive, and varied natural forest landscape. The strategic plot location will yield opportunities for the study of forest dynamics and demography while capturing a large amount of existing NSF funded LTER (Long Term Ecological Research) science infrastructure (e.g. eddy flux towers, gauged sections of a small watershed, existing smaller permanent plots) and a century of observations and studies. The HF MegaPlot will enable an integrated study of ecosystem processes (e.g., biogeochemistry, hydrology, carbon dynamics) and forest dynamics by melding the past with current and future forest research. The second census was conducted during the summers of 2018 and 2019 but did not contain the central swamp portion of the plot.
DOI: 10.5281/zenodo.5163166
title: Data supplementing the article "Paleoreconstructions of ciliate communities reveal long‑term ecological changes in temperate lakes" C. Barouillet, V. Vasselon, F. Keck, L. Millet, D. Etienne, D. Galop, D. Rius & I. Domaizon published in "Scientific reports"

description: These data supplement the article "Changes in ciliate communities reveal modification of lake ecosystem functioning over the last century" C. Barouillet, V. Vasselon, F. Keck, L. Millet, D. Etienne, D. Galop, D. Rius & I. Domaizon submitted to "Journal of Paleolimnology".


In this study, a curated version of the 18S Protist Ribosomal Reference database PR2 (version 4.12.0, Vaulot 2019) was used to perform taxonomic assignement of HTS data. The curation was performed using Mothur software (v1.44.1, Schloss et al. 2009) and the directory contains the following files : 


pr2_database_curation_procedure.docx : key steps applied to prepare a curated version of the PR2 database.


pr2_version_4.12.0_18S_cil_cur.fasta : DNA sequences of the curated PR2 database as required by Mothur software for taxonomic assignment of HTS data.


pr2_version_4.12.0_18S_cil_cur.tax : Taxonomy related to DNA sequences contain in the curated PR2 database as required by Mothur software for taxonomic assignment of HTS data.
DOI: 10.5281/zenodo.5163167
title: Data supplementing the article "Paleoreconstructions of ciliate communities reveal long‑term ecological changes in temperate lakes" C. Barouillet, V. Vasselon, F. Keck, L. Millet, D. Etienne, D. Galop, D. Rius & I. Domaizon published in "Scientific reports"

description: These data supplement the article "Changes in ciliate communities reveal modification of lake ecosystem functioning over the last century" C. Barouillet, V. Vasselon, F. Keck, L. Millet, D. Etienne, D. Galop, D. Rius & I. Domaizon submitted to "Journal of Paleolimnology".


In this study, a curated version of the 18S Protist Ribosomal Reference database PR2 (version 4.12.0, Vaulot 2019) was used to perform taxonomic assignement of HTS data. The curation was performed using Mothur software (v1.44.1, Schloss et al. 2009) and the directory contains the following files : 


pr2_database_curation_procedure.docx : key steps applied to prepare a curated version of the PR2 database.


pr2_version_4.12.0_18S_cil_cur.fasta : DNA sequences of the curated PR2 database as required by Mothur software for taxonomic assignment of HTS data.


pr2_version_4.12.0_18S_cil_cur.tax : Taxonomy related to DNA sequences contain in the curated PR2 database as required by Mothur software for taxonomic assignment of HTS data.
DOI: 10.6084/m9.figshare.24968247.v3
title: Basel phages annotation and clusters

description: <b>Table:</b><br>Annotation of Basel phages using current taxonomy information (Family, Subfamily, Genus) extracted from NCBI Taxonomy (version of DATE) and ICTV (sheet 1); The clustering results (sheet 2).<b>Figure:</b><br>Results of phages clustering visualised using C<i>omplexHeatmap</i>.
DOI: 10.35097/1756
title: Electrochemical Investigations of Sulfur-Decorated Organic Materials as Cathodes for Alkali Batteries

description: Alkali metal-sulfur batteries (Li/Na-S) have attracted much attention because of their high energy density, the natural abundance of sulfur, and environmental friendliness. However, Li/Na-S batteries still face big challenges, such as limited cycle life, poor conductivity, large volume changes, and “shuttle effect” caused by the high solubility of Li/Na-polysulfides. Herein, novel organosulfur-containing materials, i.e., bis(4-hydroxy-2,2,6,6-tetramethylpiperidin-1-yl)disulfide (BiTEMPS-OH) and 2,4-thiophene/arene copolymer (TAC) are proposed as cathode materials for Li and Na batteries. BiTEMPS-OH shows an initial discharge/charge capacity of 353/192 mAh g-1 and a capacity of 62 mAh g-1 after 200 cycles at 100 mA g-1 in ether-based Li-ion electrolyte. Meanwhile, TAC has an initial discharge/charge capacity of 270/248 mAh g-1 and better cycling performance (106 mAh g-1 after 200 cycles) than BiTEMPS-OH in the same electrolyte. However, the rate capability of TAC is limited by the slow diffusion of Li-ions. Both materials show inferior electrochemical performances in Na battery cells compared to the Li analogs. X-ray powder diffraction reveals that BiTEMPS-OH loses its crystalline structure permanently upon cycling in Li battery cells. X-ray photoelectron spectroscopy demonstrates the cleavage and partially reversible formation of S-S bonds in BiTEMPS-OH and the formation/decomposition of thick solid electrolyte interphase on the electrode surface of TAC.
description: The data include electrochemistry data, XRD data, and XPS data, which was plotting using Origin software.
DOI: 10.35097/1785
title: Hindered aluminum plating and stripping in urea/NMA/Al(OTF)3 as a Cl-free electrolyte for Al batteries

description: Conventional electrolytes for aluminum metal batteries are highly corrosive because they must remove the Al2O3 layer to enable plating and stripping. However, such corrosiveness impacts the stability of all cell parts, thus hampering the real application of aluminum-metal batteries. The urea/NMA/Al(OTF)3 electrolyte is a non-corrosive alternative to the conventional [EMImCl]: AlCl3 ionic liquid electrolyte (ILE). Unfortunately, this electrolyte demonstrates poor Al plating/stripping, probably because (being not corrosive) it cannot remove the Al2O3 passivation layer. This work proves that no plating/stripping occurs on the Al electrode despite modifying the Al surface. We highlight how urea/NMA/Al(OTF)3 electrolyte and the state of the Al electrode surface impact the interphase layer formation and, consequently, the likelihood and reversibility of Al plating/stripping. We point up the requirement for carefully drying electrolyte mixture and components, as water results in hydrogen evolution reaction and creation of an insulating interphase layer containing Al(OH)3, AlF3, and re-passivated Al oxide, which finally blocks the path for the possible Al plating/stripping.
description: The data that support the findings of this study are openly available in KIT Library.
DOI: 10.6084/m9.figshare.24968565
title: <b>Functions of Informal Subgroups in Relation to Working Groups and Group </b><b>Effectiveness</b>

description: A comparative analysis of the degree to which informal subgroups implement three specific functions in relation to the work ingroup (performing group tasks, organizing group activities, and positioning and influence within the group) has been carried out, and the direct and indirect connections of these functions of subgroups with group social and performance effectiveness have been investigated. Forty-four work groups, containing 63 informal subgroups (varying from one to three per participating group), took part in the study.
DOI: 10.35097/1659
title: Modification of Al surface via acidic treatment and its impact on plating and stripping

description: This repository contains the data of the paper.
DOI: 10.6073/pasta/233e2a2503582c7943ee489fa7b4b4de
title: Long-term trends in abundance of Lepidoptera larvae at Hubbard Brook Experimental Forest and three additional northern hardwood forest sites, 1986-2021

description: Numbers and lengths of Lepidoptera larvae (caterpillars, all species)
were censused on shrub level foliage at biweekly intervals from late
May/early June through late July/early August each year. Measurements
were conducted on the Main bird plot in the Hubbard Brook Experimental
Forest and on three additional plots within the White Mountain National
Forest from 1986-1997.
 These data were gathered as part of the Hubbard Brook Ecosystem Study
(HBES). The HBES is a collaborative effort at the Hubbard Brook
Experimental Forest, which is operated and maintained by the USDA Forest
Service, Northern Research Station.
DOI: 10.5281/zenodo.10474473
title: Hsp70-mRNA-SHAPE-DMS

description: Raw and processed SHAPE and DMS probing data for Wenshuai et al. (2024)"A compact regulatory RNA element in mouse Hsp70 mRNA." NAR Molecular Medicine
DOI: 10.5281/zenodo.10474474
title: Hsp70-mRNA-SHAPE-DMS

description: Raw and processed SHAPE and DMS probing data for Wenshuai et al. (2024)"A compact regulatory RNA element in mouse Hsp70 mRNA." NAR Molecular Medicine
DOI: 10.5281/zenodo.10473546
title: Supplementary data: A time-delayed model for active mode-locking: Data and Figures

description: Here, we present supplementary material in form of figures, their generating code and the respective data sets from our publication 'A time-delayed model for active mode-locking'. The directory contains a generating file for each figure that can be executed using matlab to reproduce the figures exactly as they are presented in the publication.
DOI: 10.4121/bb567f3e-a146-4ad8-8074-3b3fee387a0a.v1
title: Data and CFD-CRD model of industrial-scale gas fermentation

description: The models and data used in the paper "High-resolution computation predicts that low dissolved CO concentrations and CO gradients promote ethanol production at industrial-scale gas fermentation" are made available.The simulation is of an industrial-scale reactor for gas fermentation, coupled with a Lagrangian-based metabolic kinetic model of C. autoethanogenum. The simulation results (lifelines) are compared with the metabolic kinetic model solved at constant dissolved gas concentrations.The start-up files for the FLUENT simulation are provided, the processed lifelines, and all data for the constant concentration model.For each figure in the paper, the underlying data is provided.Models are .cas (FLUENT 2021R2), .c (C) and .m (Matlab R2020b) files.
DOI: 10.5281/zenodo.10474568
title: Dataset related to article "Indoleamine 2,3-dioxygenase deletion to modulate kynurenine pathway and to prevent brain injury after cardiac arrest in mice"

description: Excel file containing data related to the article
DOI: 10.5281/zenodo.10474569
title: Dataset related to article "Indoleamine 2,3-dioxygenase deletion to modulate kynurenine pathway and to prevent brain injury after cardiac arrest in mice"

description: Excel file containing data related to the article
DOI: 10.5281/zenodo.10226836
title: Data and code for: Natal legacies cause social and spatial marginalisation during dispersal

description: Abstract

Early-life experiences can drive subsequent variation in social behaviours, but how differences among individuals emerge remains unknown. We combined experimental manipulations with GPS-tracking to investigate the pathways through which developmental conditions affect social network position during the early dispersal of wild red kites (Milvus milvus). Across 211 juveniles from 140 broods, last-hatched chicks—the least competitive—had the fewest number of peer encounters after fledging. However, when food supplemented, they had more encounters than all others. Using 4,425 bird-days of GPS data, we revealed that this was driven by differential responses to competition, with less competitive individuals naturally spreading out into marginal areas, and clustering in central foraging areas when food supplemented. Our results suggest that early-life adversities can cause significant natal legacies on individual behaviour beyond independence, with potentially far-reaching consequences on the social and spatial structure of animal populations.
DOI: 10.5281/zenodo.10226837
title: Data and code for: Natal legacies cause social and spatial marginalisation during dispersal

description: Abstract

Early-life experiences can drive subsequent variation in social behaviours, but how differences among individuals emerge remains unknown. We combined experimental manipulations with GPS-tracking to investigate the pathways through which developmental conditions affect social network position during the early dispersal of wild red kites (Milvus milvus). Across 211 juveniles from 140 broods, last-hatched chicks—the least competitive—had the fewest number of peer encounters after fledging. However, when food supplemented, they had more encounters than all others. Using 4,425 bird-days of GPS data, we revealed that this was driven by differential responses to competition, with less competitive individuals naturally spreading out into marginal areas, and clustering in central foraging areas when food supplemented. Our results suggest that early-life adversities can cause significant natal legacies on individual behaviour beyond independence, with potentially far-reaching consequences on the social and spatial structure of animal populations.
DOI: 10.6084/m9.figshare.24968679
title: Genome assembly and annotation of the western flower thrips <i>Frankliniella occidentalis</i>

description: Frankliniella_occidentalis_genome_assembly.fa: genome assembly file of Frankliniella occidentalisFrankliniella_occidentalis_gene_structure_annotation.gff: genome structure annotation file of Frankliniella occidentalisFrankliniella_occidentalis_protein_coding_gene.fa: protein file of Frankliniella occidentalis
DOI: 10.4121/9011d7d2-b715-4aee-86c0-a67ca2810f2b.v1
title: MATLAB code for Modelling form roughness induced by tidal sand waves: second order perturbation approach analysis

description: This dataset contains the codes needed to compute the basic and second order flow obtained from a second order perturbation approach performed on a bed covered with tidal sand waves. The model setting is morphostatic and 2DV. The model is forced with an oscillatory flow, representative of the tidal flow.The flow is obtained by solving the dimensionless momentum and mass balance equations in Fourier space.
DOI: 10.34740/kaggle/dsv/7370504
title: Indian students data for data analysis Practice
DOI: 10.6084/m9.figshare.23968617
title: WIV, a protein domain found in a wide number of arthropod viruses, which probably facilitates infection

description: Supplementary material for "WIV, a protein domain found in a wide number of arthropod viruses, which probably facilitates infection", as described in <i>Journal of General Virology. </i>
DOI: 10.6084/m9.figshare.23968617.v1
title: WIV, a protein domain found in a wide number of arthropod viruses, which probably facilitates infection

description: Supplementary material for "WIV, a protein domain found in a wide number of arthropod viruses, which probably facilitates infection", as described in <i>Journal of General Virology. </i>
DOI: 10.1285/i15910725v44suppi
title: Copertina
DOI: 10.6084/m9.figshare.24569959.v1
title: Livelihood support for caregivers of children with developmental disabilities: findings from a scoping review and stakeholder survey

description: Poverty amongst families with a child with disability adversely impacts child and family quality of life. We aimed to identify existing approaches to livelihood support for caregivers of children with developmental disabilities in low- and middle-income countries. This mixed-method study incorporated a scoping literature review and online stakeholder survey. We utilised the World Health Organization community-based rehabilitation (CBR) matrix as a guiding framework for knowledge synthesis and descriptively analysed the included articles and survey responses. We included 11 peer-reviewed publications, 6 grey literature articles, and 49 survey responses from stakeholders working in 22 countries. Identified programmes reported direct and indirect strategies for livelihood support targeting multiple elements of the CBR matrix; particularly skills development, access to social protection measures, and self-employment; frequently in collaboration with specialist partners, and as one component of a wider intervention. Self-help groups were also common. No publications examined effectiveness of livelihood support approaches in mitigating poverty, with most describing observational studies at small scale. Whilst stakeholders describe a variety of direct and indirect approaches to livelihood support for caregivers of children with disabilities, there is a lack of published literature on content, process, and impact to inform future programme development and delivery. Disability and poverty are interlinked, but little is known on approaches to livelihood support for caregivers of children with developmental disabilities in low- and middle-income countries.Stakeholders report direct and indirect strategies for livelihood support targeting multiple livelihood elements; particularly skills development, access to social protection measures and self-employment; frequently in collaboration with specialist partners, and as one component of a wider intervention.Improved reporting of livelihood targeted activities inclusive of evaluation of feasibility, acceptability and impact would support wider implementation of effective livelihood programmes for caregivers of children with disability. Disability and poverty are interlinked, but little is known on approaches to livelihood support for caregivers of children with developmental disabilities in low- and middle-income countries. Stakeholders report direct and indirect strategies for livelihood support targeting multiple livelihood elements; particularly skills development, access to social protection measures and self-employment; frequently in collaboration with specialist partners, and as one component of a wider intervention. Improved reporting of livelihood targeted activities inclusive of evaluation of feasibility, acceptability and impact would support wider implementation of effective livelihood programmes for caregivers of children with disability.