cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19698847.v1
title: Supplementary Material for: Development and Validation of a Prognostic Nomogram to Predict 30-Day Mortality Risk in Patients with Sepsis-Induced Cardiorenal Syndrome

description: <b><i>Introduction:</i></b> Sepsis-induced cardiorenal syndrome (sepsis-induced CRS) is a devastating medical condition that is frequently associated with a high fatality rate. In this study, we aimed to develop an individualized nomogram that may help clinicians assess 30-day mortality risk in patients diagnosed with sepsis-induced CRS. <b><i>Methods:</i></b> A total of 340 patients with sepsis-induced CRS admitted from January 2015 to May 2019 in Shanghai Tongji Hospital were used as a training cohort to develop a nomogram prognostic model. The model was constructed using multivariable logistic analyses and was then externally validated by an independent cohort of 103 patients diagnosed with sepsis-induced CRS from June 2019 to December 2020. The prognostic ability of the nomogram was assessed through discrimination, calibration, and accuracy. <b><i>Results:</i></b> Five prognostic factors were determined and included in the nomogram: age, Sequential (sepsis-related) Organ Failure Assessment (SOFA) score, vasopressors, baseline serum creatinine, and the rate of change in myoglobin. Our prognostic nomogram showed well-fitted calibration curves and yielded strong discrimination power with the area under the curve of 0.879 and 0.912 in model development and validation, respectively. In addition, the nomogram prognostic model exhibited an evidently higher predictive accuracy than the SOFA score. <b><i>Conclusions:</i></b> We developed a prognostic nomogram model for patients with sepsis-induced CRS and externally validated the model in another independent cohort. The nomogram exhibited greater strength in predicting 30-day mortality risk than the SOFA score, which may help clinicians estimate short-term prognosis and modulate therapeutic strategies.
DOI: 10.6084/m9.figshare.4524467.v2
title: Dataset from: Correlation between the twig-cutting behavior of the acorn weevil and the reproductive traits of host fagaceous trees

description: Dataset from a paper titled "Correlation between the twig-cutting behavior of the acorn weevil and the reproductive traits of host fagaceous trees"
DOI: 10.6084/m9.figshare.5124490.v1
title: Supplementary Material for: Immunological Biomarkers Improve the Accuracy of Clinical Risk Models of Infection in the Acute Phase of Ischemic Stroke

description: Infection is an independent risk factor for adverse outcome in stroke patients. The risk of developing an infection in this setting is partly related to a stroke-induced immunodepression, in which a shift to a predominant Th2 (immunosuppressive) phenotype has been postulated to play a major role. Our aim was to study whether clinical variables or changes in plasma cytokine expression can predict poststroke infections. <b><i>Patients and Methods:</i></b> Medical records of 92 stroke patients were reviewed, and the baseline concentration of cytokines from the Th1/Th2 system was determined. Clinical and serological predictors of incident infections and their prognostic significance were sought by means of univariate and multivariate analysis, and two predictive models for developing an infection were constructed by combining independent predictors (strictly clinical in one, and both clinical and serological in the other) for this outcome. The improvement conferred by the addition of immunological markers to the clinical model was assessed by comparing their respective ROC curves and by improvement (Net Reclassification Index and Integrated Discriminator Improvement) analysis. <b><i>Results:</i></b> Nineteen patients (20.7% of the study sample) developed an infection. Ongoing antiplatelet therapy at symptom onset (OR 0.02, 95% CI 0.001-0.23, p = 0.001), diabetes mellitus (OR 9.96, 95% CI 1.32-75.29, p = 0.03), IL-13 level &lt;33 pg/ml (OR 84.16, 95% CI 2.53-2795.18, p = 0.01) and interferon-γ level &gt;8.4 pg/ml (OR 60.17, 95% CI 1.78-2037.23, p = 0.02) were independently associated with the development of infections during hospital admission. The combined regression model predicted infection with an accuracy of 93.4%, an improvement in the predictive capacity of 17% (p &lt; 0.001). Infection was associated with a worse neurological status at hospital discharge (median NIHSS score 11 (6-18) vs. 4 (1-11.5), p = 0.014). <b><i>Conclusions:</i></b> This study shows that bloodstream biomarkers are useful to improve the accuracy of clinical prognostic models for infection in the acute phase of stroke. The clinical predictors of infection in the acute phase of stroke are relatively well established in the medical literature, but further research to identify the optimal combination of biomarkers (possibly inflammatory and stress markers) to be included in a clinically useful model is needed. Such a model could be subsequently used in clinical trials to assess the effect of prophylactic and/or early antibiotic therapy in this setting, a currently controversial issue in this field.
DOI: 10.6084/m9.figshare.20014799.v1
title: Data supporting results of the study comparing Health Related Quality of life between people with HIV with and those without hypertension

description:   
The presence of hypertension could likely reduce the HRQoL of PWH. We aimed to  compare HRQoL scores of PWH with and without hypertension on long term (ART) in Uganda using a generic EQ-5D- 5L and MOS-HIV questionnaires.
We evaluated 308 persons (149 hypertensive PWH vs 159 non-hypertensive PWH) in the ART long term cohort at an urban clinic in Kampala, Uganda.
DOI: 10.6084/m9.figshare.6621464.v1
title: Supplementary Material for: Gestational Age and the Cord Blood Lipidomic Profile in Late Preterm and Term Infants

description: <b><i>Background:</i></b> Lipid metabolism is vital to fetal development and cardiometabolic health and the final weeks of gestation are known to be a time of intense metabolic activity. New techniques such as lipidomics allow investigation of a complex lipidomic profile in infants. <b><i>Objectives:</i></b> This research aimed to (1) describe variations in lipidomic profile in late preterm and term infants and (2) compare variations to an adult lipidomic profile with known clinical implications. <b><i>Methods:</i></b> The Barwon Infant Study (<i>n</i> = 1,074) is a population-derived pre-birth cohort study. The lipidomic profile of cord blood was measured by liquid chromatography-mass spectrometry in 225 participants and the association between gestational age and lipidomic profile was investigated using multiple linear regression adjusting for birth weight, exposure to labour, and infant sex. Patterns of association with gestational age across the lipidomic profile were compared with associations between body mass index (BMI) and lipidomic profile observed among adults in the San Antonia Family Heart Study (<i>n</i> = 994). <b><i>Results:</i></b> Gestational age was independently associated with the abundances of 39% of lipid species. Variations in the lipidomic profile with increasing gestational age were comparable to some variations observed in association with increasing BMI among adults. <b><i>Conclusion:</i></b> There is a strong relationship between gestational age and the cord blood lipid profile at birth, providing further evidence for the importance of metabolic changes of late gestation. A number of the variations in the lipid profile with increasing gestational age are analogous to differences observed in the adult lipid profile with an increasing BMI.
DOI: 10.6084/m9.figshare.6823121.v1
title: Lamellipodia SVM test set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.3550125.v1
title: Appendix E. Percentage contribution of different arthropod species to compositional dissimilarities among nitrogen treatments.

description: Percentage contribution of different arthropod species to compositional dissimilarities among nitrogen treatments.
DOI: 10.6084/m9.figshare.11406594.v1
title: Data set from agreement between CVD risk assessment tools in UAE study.xlsx

description: This is a data set for a study of Agreement between Cardiovascular Disease Risk Assessment Tools: An application to the United Arab Emirates Population.
DOI: 10.6084/m9.figshare.19193792.v2
title: Data

description: Source data to support the results we reported in both manuscript and supplementary information
DOI: 10.6084/m9.figshare.24518593.v5
title: Full-spectrum metabolism-LCMS raw data and Supplemental Table

description: Full-spectrum metabolism-LCMS raw data of the article
DOI: 10.6084/m9.figshare.6227135.v1
title: WHO/UNICEF Strategic Review of IMCI & iCCM (2016)

description: Data sources for the 2016 WHO/UNICEF Strategic Review of IMCI and iCCM.
DOI: 10.6084/m9.figshare.14572527.v1
title: Pre-Exposure Prophylaxis with Various Doses of Hdroxychloroquine among high-risk COVID 19 Healthcare Personnel: CHEER randomized controlled trial.

description: A Phase II, randomized, placebo-controlled clinical trial (Clinicaltrials.gov NCT04359537) was conducted at SZABMU/PIMS to evaluate the comparative efficacy of various HCQ doses in preventing COVID-19 among high-risk healthcare workers. Enrolment began on 1st May 2020, and the intervention continued for a total of 12 weeks. A total of 228 participants were initially enrolled (Figure 1); of them, 28 were ineligible and excluded. Participants fulfilling the eligibility criteria were randomized into the four treatment groups. Group 1 participants (n=48) were intervened with HCQ 400 mg (locally manufactured by Getz Pharma) twice a day on day 1 followed by 400 mg weekly. Group 2 (n=51) participants were given HCQ 400 mg once every 3 weeks, group 3 (n=55) administered HCQ 200 mg once every 3 weeks and participants in the control group received placebo (n=46). The baseline characteristics of all participants, including age, gender, role, comorbidities, and drug records, were obtained. COVID-19 related symptoms and adverse events (AEs) from the drug were self-reported by the enrolled participant during the study period. The COVID-19 exposure and preventive practices were monitored on a monthly basis. Disease severity was assessed through ordinal scale i.e. no illness (score=1), illness with outpatient observation (score=2), hospitalization (or post-hospital discharge) (score=3), hospitalization with ICU stay (score=4) and death from COVID 19 (score=5). All participants exhibiting COVID-19 symptoms were tested for SARS-CoV-2 during the study and also by the end of the 12th week, with PCR or IgM and IgG serology (as per accessibility).The primary endpoint was to evaluate the COVID-19-free survival among the participants by the end of the study. The secondary endpoints were to evaluate the proportion of rRT-PCR positive COVID-19 cases, the role of exposure and preventive practices, the frequency of COVID-related symptoms, treatment-related side effects, the incidence of all-cause study medicine discontinuation, and maximum disease severity during the study treatment.The study protocol was approved by the ethical review board of Shaheed Zulfiqar Ali Bhutto Medical University (Reference no. 1-1/2015/ERB/SZABMU/549; Dated 20 April 2020), and written informed consents were acquired from the participants before inclusion.
DOI: 10.6084/m9.figshare.19329827.v1
title: Tracks of one eyed ants

description: Ant movement tracks supporting the publication:<br><br>Joseph L. Woodgate, Craig Perl, Thomas S. Collett; The routes of one-eyed ants suggest a revised model of normal route following. <em><em>J Exp Biol</em></em> 15 August 2021; 224 (16): jeb242167. doi: https://doi.org/10.1242/jeb.242167<br>Joseph Woodgate was funded by Engineering and Physical Sciences Research Council, under grant no. EP/P006094/1, Brains on Board.
DOI: 10.6084/m9.figshare.20070371.v1
title: NAS-bench-Graph

description: refer to https://github.com/THUMNLab/NAS-Bench-Graph
DOI: 10.6084/m9.figshare.28519811.v2
title: Research Document for Threat Hunting

description: THis research comparing hunt query quality crafted by human using Gemini and without Gemini focus on threat hunting
DOI: 10.17608/k6.auckland.25834876.v1
title: Data and code

description: Dataset used to produce the results and figures
DOI: 10.6084/m9.figshare.14872554.v2
title: Excel file- Dataset.xlsx

description: This dataset is analysed for theories, type of papers, Academic entrepreneurial engagement factors and challenges, method and findings
DOI: 10.6084/m9.figshare.25601277.v1
title: Test case

description: Test cases for Amromics pipeline paper
DOI: 10.6084/m9.figshare.25816858.v4
title: Test raw sequencing files for easyampr

description: Sequencing data for examples for the R package easyampr.raw.zip: raw sequences from amplicon sequencing in MiSeq 300 PE of 30 markers of three individuals of a mammal species.demultiplexed.zip: per-locus demultiplexed sequences (product of 'demultiplex_loci').truncated.zip: truncated sequences after being demultiplexed (product of 'easyampr::trunc_amp').
DOI: 10.15468/dl.jbnatp
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Neoascia interrupta (Meigen, 1822)"
 ]
}

 The dataset includes 112 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009450-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5909611.v1
title: Supplementary Material for: Benzodiazepines as a Monotherapy in Depressive Disorders: A Systematic Review

description: <b><i>Background:</i></b> The aim of this paper was to perform a systematic review and, when feasible, a meta-analysis of randomized controlled trials (RCT) which used benzodiazepines (BZD) as a monotherapy versus placebo, antidepressant drugs (AD), or both. <b><i>Methods:</i></b> Keyword searches were conducted for identifying RCT comparing BZD and AD, and/or placebo in the treatment of depression, using electronic databases from their inception up to April 2017. We selected reports of RCT in which BZD were compared to AD and/or placebo in the treatment of adult patients with a primary diagnosis of depressive disorder or anxious depression. When feasible, data were subjected to meta-analysis. <b><i>Results:</i></b> A total of 38 studies met the criteria for inclusion and were then included in the systematic review. Only 1 study concerned a newer AD, fluvoxamine. For the meta-analysis, we submitted data on response rate from 22 RCT, considering BZD versus placebo (8 comparisons) and BZD versus tricyclic antidepressants (TCA) (20 comparisons). There was a lack of significant differences as to response rate between BZD and placebo, as well as between BZD and TCA. Analysis of individual studies disclosed that, in more than half of the studies comparing BZD to TCA and/or placebo, BZD were significantly more effective than placebo and as effective as TCA. <b><i>Conclusions:</i></b> BZD are a therapeutic option in anxious depression and there are no indications that AD are preferable. There is a pressing need for RCT of adequate methodological quality and follow-up comparing BZD to second-generation AD and placebo in anxious depression.
DOI: 10.6084/m9.figshare.22277758.v1
title: Code and data for "Statistical Indices of Masculinity-Femininity: A Theoretical and Practical Framework"

description: R code and data for:<br>Del Giudice, M. (2024). Statistical Indices of Masculinity-Femininity: A Theoretical and Practical Framework. Behavior Research Methods.
DOI: 10.6084/m9.figshare.27906300.v2
title: The release of Pitaya genomes of <b>Gap-free genome and efficient transcript purification system reveals the genomes diversity and chlorophyll degradation mechanism in pitaya</b><i> </i><i>H. polyrhizus (</i>Cultivar. ShuangSe (Gapfree),Cultivar. DaHong<i>) and </i><i>H. stenopterus (</i>Wild variety. Honghuaqinglong<i>)</i>

description: Pitaya is an important perennial herbaceous fruit tree. The color of fruit determines pitaya nutritive (and attractive) value, which is considered as an important objective in breeding improvement. In this study, we reported the first telomere-to-telomere (T2T) gap-free genome of ‘Shuangse No. 1’ pitaya (<i>Hylocereus </i><i>polyrhizus</i>;<i> </i>red peel). Two high-quality genomes for ‘Dahong’ (<i>H. polyrhizus</i>;<i> </i>red peel) and ‘Honghuaqinglong’ (<i>H. stenopterus</i>; stay-green) were further assembled aiming to explore the genetic diversity of pitaya genomes. In further analysis, we noticed a high proportion of viral contamination in pitaya tissues, which hindered the efficient utilization of transcriptomic data. To address this issue, we analyzed 111 pitaya transcriptome data from different geographic regions to characterize and separate viral components. Then we developed an efficient, novel, and universal transcript purification system for pitaya transcriptomes by applying it to 27 samples from different tissues and species, thereby enhancing the utility for transcriptomic and broader biological research. Combining the purified transcriptomic data with comparative genomic analyses, we identified <i>HuERF72</i>, a transcription factor that potentially regulates chlorophyll degradation in pitaya.<i> </i>Interaction assays and plant transformation elucidated that <i>HuERF72</i> acts as a repressive transcription factor by directly binding to the promoter of <i>HuSGR1</i>, a key structural gene in the chlorophyll degradation pathway. This study provides high-quality genomic resources and novel methodologies for molecular investigations in pitaya. Additionally, the proposed regulatory network advances our understanding of the transcriptional regulatory mechanisms underlying chlorophyll degradation, offering valuable insights into the genetic improvement of pitaya.
DOI: 10.6084/m9.figshare.12442244.v1
title: Web appendix National and regional under-5 mortality rate by economic status for low-income and middle-income countries: a systematic assessment

description: This web appendix formed part of the original submission and has been peer reviewed. The journal post it as supplied by the authors.Supplement to: Chao F, You D, Pedersen J, Hug L, Alkema L. National and regional under-5 mortality rate by economic status for low-income and middle-income countries: a systematic assessment. Lancet Glob Health 2018; 6: e535-47.
DOI: 10.6084/m9.figshare.5318449.v2
title: The biomechanical origin of extreme wing allometry in hummingbirds

description: These are data and JAGS model files for Skandalis et al. 2017, The biomechanical origin of extreme wing allometry in hummingbirds<br>For descriptions of the data, see README analysis_data_power.txt, and for an overview of the JAGS models, see README JAGS_models.txt.MCC_analysis_data.nex is the Maximum Clade Credibility hummingbird species tree found by McGuire et al. 2014<br>posttrees_analysis_data.nex is the posterior distribution of trees generated as described in the text.<br><br>JAGS model codes are published under MIT license.<br>
DOI: 10.17632/r9v37kwxn9.1
title: Effect of Motor Imagery and Conventional Exercises on Pain and Disability in Subjects with Chronic Mechanical Back Pain

description: Abstract 
Background: Chronic mechanical back pain is a prevalent musculoskeletal disorder that 
significantly impacts quality of life by increasing pain, disability, and psychological distress. 
Conventional exercise therapy is a widely accepted treatment; however, newer approaches like 
MI have shown potential in enhancing rehabilitation outcomes by targeting both physical and 
psychological components of pain. 
Objective: The objective of this study was to evaluate and compare the effects of MI and 
conventional exercises on pain intensity, functional disability, and psychological inflexibility in 
subjects with chronic mechanical back pain. 
Research Methodology: A total of 40 participants with chronic mechanical back pain were 
randomly assigned to either an MI group or a conventional exercise group. Interventions were 
administered over four weeks. Pain intensity was assessed using the NPRS, functional disability 
was measured through the MODI, and psychological inflexibility was evaluated using the PIPS. 
Data normality was assessed using the Shapiro-Wilk test. Within-group and between-group 
analyses were conducted using paired t-tests and Mann-Whitney U tests respectively. Post-hoc 
power analysis and MCID calculations were also performed. 
Results: Both groups demonstrated significant within-group improvements in NPRS, MODI, 
and PIPS scores after four weeks (p &lt; 0.05), with changes exceeding the MCID thresholds, 
indicating clinically meaningful benefits. However, between-group comparisons showed no 
statistically significant differences in outcomes (p &gt; 0.05). Post-hoc analysis revealed adequate 
power for NPRS but lower power for MODI and PIPS. 
Conclusion: MI was found to be an effective intervention in reducing pain, improving 
disability, and enhancing psychological flexibility in individuals with chronic mechanical back 
pain. Although no statistically significant differences were observed when compared to 
conventional exercises, the clinical improvements confirm that MIcan be effectively 
incorporated into rehabilitation programs. Future studies with larger sample sizes and longer 
follow-up periods are recommended to further validate these findings. 
Keywords: Chronic back pain, Motor imagery, Conventional exercises, Pain management, 
Disability, Psychological Status
DOI: 10.25442/hku.28509761.v1
title: Supporting data for “Research Misconduct in Chinese Universities: An Institutional and Emotional Analysis”

description: This thesis aims to answer the question: "Why do Chinese scholars engage in research misconduct even though they have precepted it as unethical?" The PhD candidate has gathered faculty members, administrators, and research postgraduate students from three Chinese universities in two geographical areas, Beijing and <i>the Area</i> (a place in Northeastern China).The candidate collected data mainly through in-depth semi- and non-structured online and in-person interviews. He also collected supplementary data from published national announcements, public news media, social media platforms, and friends' collections.This dataset includes two parts: interview data and supplementary materials (e.g., official announcements and published news). The interview transcripts indicate the communication between the candidate and participants (i.e., university faculty members, administrators, and research postgraduate students) during the interviews. The information also covers secrets that these interviewees only want to share with the candidate. All sensitive parts in these transcripts are modified and coded.The supplementary data are all published materials that do not have issues of privacy.The dataset is not open to the public due to consent.
DOI: 10.6084/m9.figshare.1263501.v2
title: Laser Printer Attribution: Exploring New Features and Beyond

description: Dataset of the paper Laser Printer Attribution:<br>Exploring New Features and Beyond