cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2prxds
title: CCDC 2495636: Experimental Crystal Structure Determination

description: Related Article: Yuan Liu, Qing Lin Guan, Yong Heng Xing, Feng Ying Bai|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01527
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n7xhb
title: CCDC 2450472: Experimental Crystal Structure Determination

description: Related Article: Maciej Ptak, Dorota A. Kowalska, Szymon Smółka, Mariusz Stefanski, Julia Osmólska, Damian Szymański, Adam Sieradzki|2025|J.Phys.Chem.C|129|14075|doi:10.1021/acs.jpcc.5c03559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n7xjc
title: CCDC 2450473: Experimental Crystal Structure Determination

description: Related Article: Maciej Ptak, Dorota A. Kowalska, Szymon Smółka, Mariusz Stefanski, Julia Osmólska, Damian Szymański, Adam Sieradzki|2025|J.Phys.Chem.C|129|14075|doi:10.1021/acs.jpcc.5c03559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.18630338
title: Individual dataset of mechanical and electromyographic variables during maximal force production in a leg press task.

description: The shared excel presents the individual dataset collected during a 6-week squat training program.

Sheet 1 presents maximal force, rate of force development related variables, average electromyographic activity and rate of electromyographic rise.

Sheet 2 presents intermuscular coherence values between lower limb pairs of muscles within within several frequency-bands of interest.

PF - peak force; RFD - rate of force development; EMG - electromyography; RER - rate of EMG rise; W0 - starting of training program; W2 - week 2 of training program; W4 - week 4 of training program; POS - ending of training program (6 weeks).

VL - vastus lateralis of quadriceps; VM - vastus medialis of quadriceps; RF - rectus femoris of quadriceps; Gmax - gluteus maximus; BF - biceps femoris; GL - gastrocnemius lateralis; TA - tibialis anterior.
DOI: 10.5281/zenodo.18630339
title: Individual dataset of mechanical and electromyographic variables during maximal force production in a leg press task.

description: The shared excel presents the individual dataset collected during a 6-week squat training program.

Sheet 1 presents maximal force, rate of force development related variables, average electromyographic activity and rate of electromyographic rise.

Sheet 2 presents intermuscular coherence values between lower limb pairs of muscles within within several frequency-bands of interest.

PF - peak force; RFD - rate of force development; EMG - electromyography; RER - rate of EMG rise; W0 - starting of training program; W2 - week 2 of training program; W4 - week 4 of training program; POS - ending of training program (6 weeks).

VL - vastus lateralis of quadriceps; VM - vastus medialis of quadriceps; RF - rectus femoris of quadriceps; Gmax - gluteus maximus; BF - biceps femoris; GL - gastrocnemius lateralis; TA - tibialis anterior.
DOI: 10.15468/dl.hrjksv
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanorivulus litteratus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014948-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31332466
title: Supplementary Material for: Testing Multiple Delivery Methods of the Virtual Exercise Games for Youth with T1D (ExerT1D) Peer Intervention: Protocol Development and Feasibility

description: Background: Adolescents with type 1 diabetes (T1D) face barriers to moderate-to-vigorous physical activity (MVPA) such as uncertainty with self-management, limited access to supportive environments, and stigma related to living with diabetes. Opportunities for peer activities with T1D role model support are limited. To address this need, we tested iterative refinements of pilot Virtual Exercise Games for Youth with T1D (ExerT1D) for feasibility and acceptability. 
Methods: The program included 6 versions: study 1 (1.1-1.4) included an active videogame, and study 2 (2.1-2.2) included a virtual reality active videogame. All versions included T1D exercise management education by clinicians and goal-setting guided by young adult coaches with T1D. 
Results: Seventeen adolescents (median age 15.4 [IQR 14.6-16.4] years, 7 non-Hispanic white, 8 male, median HbA1c 8.1% [IQR 7.4%-11.1%]) enrolled. Participants rated the program, comfort, clinicians, coaches, and group cohesion high/very high. Motivation for the videogame was high . Building T1D and MVPA self-management skills was rated excellent at most sessions, as were peer interactions and enriched communication after adding immersive virtual reality in study 2. Transitions between VR apps caused delays of 19±6 minutes per 60min-90min session. Compared to baseline, HbA1c or Glucose Management Indicator (GMI) decreased over time in an exploratory analysis (d=-1.12, 90% CI [-1.78,-0.48]).
Conclusions: In a small cohort, the ExerT1D program facilitated a supportive environment for engaging diverse youth with T1D in an MVPA program led by T1D coaches. Larger studies are needed to assess the intervention’s impact on engagement with physical activity, glycemic outcomes, and quality of life.
DOI: 10.6084/m9.figshare.31332466.v1
title: Supplementary Material for: Testing Multiple Delivery Methods of the Virtual Exercise Games for Youth with T1D (ExerT1D) Peer Intervention: Protocol Development and Feasibility

description: Background: Adolescents with type 1 diabetes (T1D) face barriers to moderate-to-vigorous physical activity (MVPA) such as uncertainty with self-management, limited access to supportive environments, and stigma related to living with diabetes. Opportunities for peer activities with T1D role model support are limited. To address this need, we tested iterative refinements of pilot Virtual Exercise Games for Youth with T1D (ExerT1D) for feasibility and acceptability. 
Methods: The program included 6 versions: study 1 (1.1-1.4) included an active videogame, and study 2 (2.1-2.2) included a virtual reality active videogame. All versions included T1D exercise management education by clinicians and goal-setting guided by young adult coaches with T1D. 
Results: Seventeen adolescents (median age 15.4 [IQR 14.6-16.4] years, 7 non-Hispanic white, 8 male, median HbA1c 8.1% [IQR 7.4%-11.1%]) enrolled. Participants rated the program, comfort, clinicians, coaches, and group cohesion high/very high. Motivation for the videogame was high . Building T1D and MVPA self-management skills was rated excellent at most sessions, as were peer interactions and enriched communication after adding immersive virtual reality in study 2. Transitions between VR apps caused delays of 19±6 minutes per 60min-90min session. Compared to baseline, HbA1c or Glucose Management Indicator (GMI) decreased over time in an exploratory analysis (d=-1.12, 90% CI [-1.78,-0.48]).
Conclusions: In a small cohort, the ExerT1D program facilitated a supportive environment for engaging diverse youth with T1D in an MVPA program led by T1D coaches. Larger studies are needed to assess the intervention’s impact on engagement with physical activity, glycemic outcomes, and quality of life.
DOI: 10.6084/m9.figshare.31332469
title: Supplementary Material for: Two Novel Variants in MT-RNR1 Gene Associated with Hereditary Optic Neuropathy: A Case Report

description: Abstract

Background: Hereditary optic neuropathies are primarily disorders of mitochondrial dysfunction leading to the metabolic failure of the highly energy-dependant retinal ganglion cells. Beyond the canonical variants found in OPA1 or the mitochondrial genome, a growing subset of patients exhibit progressive optic atrophy of unknown origin. Identifying these variants is critical, as they might lead to a diagnostic delay. We report two cases with a previously unreported MT-RNR1 variants, potentially contributing to a hereditary optic neuropathy.

Case presentation: A 55-year-old woman with painless progressive optic neuropathy presented with bilateral central scotomas and temporal optic disc pallor. Nutritional, inflammatory, and demyelinating causes were excluded. Genetic testing revealed MT-RNR1:m.1019A&gt;G variant, potentially contributing to a hereditary optic neuropathy. A 59-year-old woman with similar bilateral temporal pallor and symmetric retinal nerve fiber layer thinning was found to harbor MT-RNR1:m.1183T&gt;C variant. 

Conclusion: MT-RNR1 gene variant was the possible cause of vision loss in these patients with mild vision loss and a clinical picture consistent with a hereditary optic neuropathy. Herein, we describe two novel variants and associated clinical features. This case report introduces a previously unrecognized genetic variant, potentially contributing to a hereditary optic neuropathy.
DOI: 10.6084/m9.figshare.31332469.v1
title: Supplementary Material for: Two Novel Variants in MT-RNR1 Gene Associated with Hereditary Optic Neuropathy: A Case Report

description: Abstract

Background: Hereditary optic neuropathies are primarily disorders of mitochondrial dysfunction leading to the metabolic failure of the highly energy-dependant retinal ganglion cells. Beyond the canonical variants found in OPA1 or the mitochondrial genome, a growing subset of patients exhibit progressive optic atrophy of unknown origin. Identifying these variants is critical, as they might lead to a diagnostic delay. We report two cases with a previously unreported MT-RNR1 variants, potentially contributing to a hereditary optic neuropathy.

Case presentation: A 55-year-old woman with painless progressive optic neuropathy presented with bilateral central scotomas and temporal optic disc pallor. Nutritional, inflammatory, and demyelinating causes were excluded. Genetic testing revealed MT-RNR1:m.1019A&gt;G variant, potentially contributing to a hereditary optic neuropathy. A 59-year-old woman with similar bilateral temporal pallor and symmetric retinal nerve fiber layer thinning was found to harbor MT-RNR1:m.1183T&gt;C variant. 

Conclusion: MT-RNR1 gene variant was the possible cause of vision loss in these patients with mild vision loss and a clinical picture consistent with a hereditary optic neuropathy. Herein, we describe two novel variants and associated clinical features. This case report introduces a previously unrecognized genetic variant, potentially contributing to a hereditary optic neuropathy.
DOI: 10.6084/m9.figshare.31332472
title: Supplementary Material for: Sex differences in IPF: data from the German INSIGHTS-registry

description: Background:
Idiopathic pulmonary fibrosis (IPF) preferentially occurs in male patients and controversial results in gender-specific differences including overall mortality have been reported.

Methods: 
The INSIGHTS IPF registry was a non-interventional, prospective cohort study including IPF patients from 20 interstitial lung disease expert centres in Germany. Sex-related disparities were analyzed regarding comorbidities, clinical course and survival.

Results:
Of the 1043 IPF patients included, 842 (80.7%) were male and 201 (19.3%) were female. Male patients were more likely to have a history of smoking (p&lt;0.001) and environmental exposure, especially metal dust, wood dust and solvents (p=0.032). While males at baseline had a higher prevalence of coronary artery disease, atrial fibrillation, emphysema and obstructive sleep apnoea syndrome, in females, gastro-oesophageal reflux disease and depression or depressive disorders were more frequent. Female IPF patients had more frequently a history of immunosuppressive therapy (p=0.003). Regardless of gender, the INSIGHTS IPF cohort as a whole showed a progressive worsening of lung function parameters over time. All-cause mortality did not differ between females and males (HR: 0.81; 95%-CI: 0.63; 1.04; p=0.093) and female gender was not a significant predictor for mortality in IPF (HR 0.74; 95%-CI: 0.54–1.03; p=0.071). Interestingly, the GAP score underestimated the observed 2-years and 3-years mortality in females in GAP Stage II.

Conclusion:
In conclusion, in the German INSIGHTS IPF registry no differences in lung function decline and survival could be observed between female and male patients with IPF, indicating differences between IPF cohorts from the USA and Europe.
DOI: 10.6084/m9.figshare.31332472.v1
title: Supplementary Material for: Sex differences in IPF: data from the German INSIGHTS-registry

description: Background:
Idiopathic pulmonary fibrosis (IPF) preferentially occurs in male patients and controversial results in gender-specific differences including overall mortality have been reported.

Methods: 
The INSIGHTS IPF registry was a non-interventional, prospective cohort study including IPF patients from 20 interstitial lung disease expert centres in Germany. Sex-related disparities were analyzed regarding comorbidities, clinical course and survival.

Results:
Of the 1043 IPF patients included, 842 (80.7%) were male and 201 (19.3%) were female. Male patients were more likely to have a history of smoking (p&lt;0.001) and environmental exposure, especially metal dust, wood dust and solvents (p=0.032). While males at baseline had a higher prevalence of coronary artery disease, atrial fibrillation, emphysema and obstructive sleep apnoea syndrome, in females, gastro-oesophageal reflux disease and depression or depressive disorders were more frequent. Female IPF patients had more frequently a history of immunosuppressive therapy (p=0.003). Regardless of gender, the INSIGHTS IPF cohort as a whole showed a progressive worsening of lung function parameters over time. All-cause mortality did not differ between females and males (HR: 0.81; 95%-CI: 0.63; 1.04; p=0.093) and female gender was not a significant predictor for mortality in IPF (HR 0.74; 95%-CI: 0.54–1.03; p=0.071). Interestingly, the GAP score underestimated the observed 2-years and 3-years mortality in females in GAP Stage II.

Conclusion:
In conclusion, in the German INSIGHTS IPF registry no differences in lung function decline and survival could be observed between female and male patients with IPF, indicating differences between IPF cohorts from the USA and Europe.
DOI: 10.15468/dl.hg4znr
title: Occurrence Download

description: A dataset containing 1376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesophyllum expansum"
 ]
}

 The dataset includes 1376 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014949-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18489879
title: Mapping the Mind in Motion: A Multi-Method GIS–SEM–NCA Model of Green Exposure and Psychological Restoration in Urban Jogging Environments
DOI: 10.5281/zenodo.18489878
title: Mapping the Mind in Motion: A Multi-Method GIS–SEM–NCA Model of Green Exposure and Psychological Restoration in Urban Jogging Environments
DOI: 10.15468/dl.a28gy3
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa ophthalmocentra",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 932 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014952-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34669/wi.rd/6
title: Multi-Platform Social Media Data Donation Behavior Dataset
DOI: 10.5281/zenodo.18630252
title: Mopo Industry data for Switzerland, Norway and UK

description: The Mopo Industry data for Switzerland, Norway and UK is used for creating the full Mopo industry component covering EU30
DOI: 10.15468/dl.cmdqmn
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coprosma longifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014953-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnxdv9
title: Occurrence Download

description: A dataset containing 42192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-110.0",
 "Country is France",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi",
 "Year 2017-2026"
 ]
}

 The dataset includes 42192 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014950-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qbeuh
title: Occurrence Download

description: A dataset containing 15077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mikania micrantha",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 15077 records from 322 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014954-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sm9t2j
title: Occurrence Download

description: A dataset containing 373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.75052 37.02332,-4.75052 37.02332,-4.97435 36.44782,-4.13499 35.89825,-2.95057 36.76226,-3.73397 37.43915,-4.53602 37.54274,-4.75052 37.02332))",
 "HasGeospatialIssue is false",
 "TaxonKey is Buxus balearica"
 ]
}

 The dataset includes 373 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014957-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqztqf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanorivulus megaroni",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014956-260208012135463/datasets/export for details.
DOI: 10.15468/dl.sp9ptf
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Simira gardneriana",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 78 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014959-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17693524
title: Dataset and code for Lyu C, Matbouriahi M, Naudet F, Ioannidis JPA, Cristea IA, "Retracted randomized trials attributed to super-retractors and top-cited scientists with multiple retractions: secondary analysis of the VITALITY retrospective cohort"

description: Datasets and STATA code for Lyu C, Matbouriahi M, Naudet F, Ioannidis JPA, Cristea IA, "Retracted randomized trials attributed to super-retractors and top-cited scientists with multiple retractions: secondary analysis of the VITALITY retrospective cohort"
DOI: 10.5281/zenodo.18630545
title: Dataset and code for Lyu C, Matbouriahi M, Naudet F, Ioannidis JPA, Cristea IA, "Retracted randomized trials attributed to super-retractors and top-cited scientists with multiple retractions: secondary analysis of the VITALITY retrospective cohort"

description: Datasets and STATA code for Lyu C, Matbouriahi M, Naudet F, Ioannidis JPA, Cristea IA, "Retracted randomized trials attributed to super-retractors and top-cited scientists with multiple retractions: secondary analysis of the VITALITY retrospective cohort"
DOI: 10.5281/zenodo.16497347
title: Supporting Files for the manuscript -"DECIPHERING MICROBIOME-DERIVED PEPTIDES: A COMPUTATIONAL PERSPECTIVE ON CLASS-A GPCR REGULATION"

description:  

This repository contains all computational data and analysis files associated with the manuscript titled DECIPHERING MICROBIOME-DERIVED PEPTIDES: A Computational Perspective on Class-A GPCR Regulation. The study presents a comprehensive in silico evaluation of microbiome-derived peptides and their regulatory impact on class A G protein-coupled receptors (GPCRs), namely NTS1R, V2R, and OX2R.

The included datasets support molecular docking, molecular dynamics (MD) simulation in triplicates (300 ns trajectories), binding free energy calculations via MM-PBSA, and principal component analysis (PCA) exploring biased signaling and conformational transitions.
DOI: 10.5281/zenodo.16526826
title: Supporting Files for the manuscript -"DECIPHERING MICROBIOME-DERIVED PEPTIDES: A COMPUTATIONAL PERSPECTIVE ON CLASS-A GPCR REGULATION"

description:  

This repository contains all computational data and analysis files associated with the manuscript titled DECIPHERING MICROBIOME-DERIVED PEPTIDES: A Computational Perspective on Class-A GPCR Regulation. The study presents a comprehensive in silico evaluation of microbiome-derived peptides and their regulatory impact on class A G protein-coupled receptors (GPCRs), namely NTS1R, V2R, and OX2R.

The included datasets support molecular docking, molecular dynamics (MD) simulation in triplicates (300 ns trajectories), binding free energy calculations via MM-PBSA, and principal component analysis (PCA) exploring biased signaling and conformational transitions.
DOI: 10.15468/dl.k2q9m5
title: Occurrence Download

description: A dataset containing 18299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "GadmGid is FRA.9_1",
 "TaxonKey is Chromista",
 "Year 1974-2014"
 ]
}

 The dataset includes 18299 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014958-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.