cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/1529253
title: Angus Sequence Data: Animal 44883

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 44883.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset
. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529254
title: Angus Sequence Data: Animal 44718

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 44718.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset
. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.5281/zenodo.8132083
title: Supporting Information (NMR FID archive) for Keroplatus spp. oxyluciferin structure elucidation

description: NMR FID archive for MS "<em>Keroplatus spp.</em> oxyluciferin structure elucidation"
DOI: 10.5281/zenodo.8132082
title: Supporting Information (NMR FID archive) for Keroplatus spp. oxyluciferin structure elucidation

description: NMR FID archive for MS "<em>Keroplatus spp.</em> oxyluciferin structure elucidation"
DOI: 10.15482/usda.adc/1529255
title: Angus Sequence Data: Animal 44542

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 44542.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529256
title: Angus Sequence Data: Animal 44462

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 44462.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529257
title: Angus Sequence Data: Animal 29451

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 29451.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529258
title: Angus Sequence Data: Animal 29443

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 29443.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.5519/qd.cboohqp3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15482/usda.adc/1529259
title: Angus Sequence Data: Animal 24266

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 24266.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15472/vaaef4
title: Checklist of Cerambycidae from the Caribbean region of Colombia

description: This resource presents the checklist of the species from the family Cerambycidae (Coleoptera: Cerambycoidea) collected in the Caribbean region of Colombia, founded during the revision of entomological collections in Colombia. In this checklist two subfamilies, 34 tribes, 90 genera and 132 species are reported. This information was gathered from the following entomological collections in Colombia: Universidad del Atlántico, Puerto Colombia (UARC), Museo Javeriano historia natural Lorenzo Uribe, S.J., Pontificia Universidad Javeriana, Bogotá (MPUJ), Instituto de Ciencias Naturales, Universidad Nacional, Bogotá (ICN), Colección Taxonómica Nacional de Insectos Luis María Murillo, Corporación Colombiana de Investigación agropecuaria, Mosquera (CTNI). For all species the distribution in the Caribbean departments was indicated.
DOI: 10.15482/usda.adc/1529260
title: Angus Sequence Data: Animal 20841

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20841.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529261
title: Angus Sequence Data: Animal 20834

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20834.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529262
title: Angus Sequence Data: Animal 20816

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20816.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset
. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529263
title: Angus Sequence Data: Animal 20786

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20786.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529264
title: Angus Sequence Data: Animal 20783

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20783.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529265
title: Angus Sequence Data: Animal 20774

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20774.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529266
title: Angus Sequence Data: Animal 20735

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20735.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.6084/m9.figshare.23623812.v2
title: Supplementary data and R script for Human Differences

description: Input and output CSV files, images, and R script. <br> Edit on July 13, 2023: Calculated v-Loss in terms of raw age-structured deaths and total deaths instead of age-structured death rates and crude death rate.
DOI: 10.15482/usda.adc/1529267
title: Angus Sequence Data: Animal 20658

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20658.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.15482/usda.adc/1529268
title: Angus Sequence Data: Animal 20598

description: Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.
The National Animal Germplasm Program has germplasm for this animal, with the repository number 20598.
There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.
DOI: 10.5281/zenodo.8156775
title: Genome-Wide Association Studies meta-analysis uncovers NOJO and SGS3 novel genes involved in Arabidopsis thaliana primary root development and plasticity

description: Postembryonic primary root growth relies on meristems that harbour multipotent stem cells that produce new cells that will duplicate and provide all the different root cell types. <em>Arabidopsis thaliana</em> primary root growth has become a model for evo-devo studies due to its simplicity and facility to record cell proliferation and differentiation. To identify new genetic components relevant to primary root growth, we used a Genome-Wide Association Studies (GWAS) meta-analysis approach using data published in the last decade. In this work, we performed intra and inter-studies analyses to discover new genetic components that could participate in primary root growth. We used 639 accessions from nine different studies and performed different GWAS tests ranging from single studies and pairwise analysis with high correlation associations, analyzing the same number of accessions in different studies to using the daily data of the root growth kinetic of the same research. We found that primary root growth changes were associated with 41 genomic loci, of which six (14.6%) have been previously described as inhibitors or promoters of primary root growth. The knockdown of genes associated with two of these loci: a gene that participates in Trans-acting siRNAs (tasiRNAs) processing <em>Suppressor of Gene Silencing</em> (<em>SGS3</em>) and a gene with a Sterile Alpha Motif (SAM) confirmed their participation as repressors of primary root growth. As none has been shown to participate in this developmental process before, our GWAS analysis identified new genes that participate in primary root growth. Overall, our findings provide novel insights into the genomic basis of root development and further demonstrate the usefulness of GWAS meta-analyses in non-human species.
DOI: 10.5281/zenodo.8156774
title: Genome-Wide Association Studies meta-analysis uncovers NOJO and SGS3 novel genes involved in Arabidopsis thaliana primary root development and plasticity

description: Postembryonic primary root growth relies on meristems that harbour multipotent stem cells that produce new cells that will duplicate and provide all the different root cell types. <em>Arabidopsis thaliana</em> primary root growth has become a model for evo-devo studies due to its simplicity and facility to record cell proliferation and differentiation. To identify new genetic components relevant to primary root growth, we used a Genome-Wide Association Studies (GWAS) meta-analysis approach using data published in the last decade. In this work, we performed intra and inter-studies analyses to discover new genetic components that could participate in primary root growth. We used 639 accessions from nine different studies and performed different GWAS tests ranging from single studies and pairwise analysis with high correlation associations, analyzing the same number of accessions in different studies to using the daily data of the root growth kinetic of the same research. We found that primary root growth changes were associated with 41 genomic loci, of which six (14.6%) have been previously described as inhibitors or promoters of primary root growth. The knockdown of genes associated with two of these loci: a gene that participates in Trans-acting siRNAs (tasiRNAs) processing <em>Suppressor of Gene Silencing</em> (<em>SGS3</em>) and a gene with a Sterile Alpha Motif (SAM) confirmed their participation as repressors of primary root growth. As none has been shown to participate in this developmental process before, our GWAS analysis identified new genes that participate in primary root growth. Overall, our findings provide novel insights into the genomic basis of root development and further demonstrate the usefulness of GWAS meta-analyses in non-human species.
DOI: 10.5281/zenodo.6885848
title: Data from: Effects of climate change on plant resource allocation and herbivore interactions in a Neotropical rainforest shrub

description: Data from "Effects of climate change on plant resource allocation and herbivore interactions in a Neotropical rainforest shrub" published in <em>Ecology and Evolution. </em>doi.org/10.1002/ece3.9198
DOI: 10.5281/zenodo.6885847
title: Data from: Effects of climate change on plant resource allocation and herbivore interactions in a Neotropical rainforest shrub

description: Data from "Effects of climate change on plant resource allocation and herbivore interactions in a Neotropical rainforest shrub" published in <em>Ecology and Evolution. </em>doi.org/10.1002/ece3.9198
DOI: 10.5281/zenodo.7909298
title: Data from: Biotic and abiotic factors shaping bat activity in Maryland soybean fields

description: Data and code for <em>Ecosphere</em> publication, "Biotic and abiotic factors shaping bat activity in Maryland soybean fields." @susanrw https://doi.org/10.1002/ecs2.4575
DOI: 10.5281/zenodo.7909297
title: Data from: Biotic and abiotic factors shaping bat activity in Maryland soybean fields

description: Data and code for <em>Ecosphere</em> publication, "Biotic and abiotic factors shaping bat activity in Maryland soybean fields." @susanrw https://doi.org/10.1002/ecs2.4575
DOI: 10.5281/zenodo.3976066
title: Data from - Secondary metabolites in a neotropical shrub: spatiotemporal allocation and role in fruit defense and dispersal

description: Data from "Secondary metabolites in a neotropical shrub: spatiotemporal allocation and role in fruit defense and dispersal" published in <em>Ecology </em>in 2020. doi.org/10.1002/ecy.3192
DOI: 10.5281/zenodo.3976065
title: Data from - Secondary metabolites in a neotropical shrub: spatiotemporal allocation and role in fruit defense and dispersal

description: Data from "Secondary metabolites in a neotropical shrub: spatiotemporal allocation and role in fruit defense and dispersal" published in <em>Ecology </em>in 2020. doi.org/10.1002/ecy.3192
DOI: 10.15472/tlfh3l
title: Checklist of Formicidae from the Caribbean region of Colombia

description: This resource lists the species of the family Formicidae (Hymenoptera: Formicidae) known to occur in the Caribbean region of Colombia. Nine subfamilies, 16 tribes, 30 genera, 95 species are listed. The information has been compiled from information available in the main catalogs dealing with the group and in recent literature. References to all original descriptions and taxonomic revisions are included. This information was gathered from the following entomological collections in Colombia: Universidad del Atlántico, Puerto Colombia (UARC).
DOI: 10.6073/pasta/0570d40b202f62793b46f8d1af99a3f0
title: Column-Averaged Atmospheric Carbon and Water at Harvard Forest since 2018

description: Ground-based total-atmospheric column measurements of CO2, CH4, CO, and H2O began at Harvard Forest in May 2018 using a solar-viewing Fourier Transform Spectrometer (Bruker EM27/Sun). Observations are made from a platform near the Fisher Meteorological Tower throughout the year on sunny days. Total column observations are sensitive to regional carbon fluxes, and are less impacted by changes in the boundary layer height than tower based in-situ observations. The Harvard Forest observations are complemented by an identical instrument operated on the Harvard campus in Cambridge MA. The two sensors are used to support studies of urban emissions, regional transport, and forest-atmosphere exchange. In addition, the total-column measurements provide key validation data for satellite measurements of greenhouse gases.
DOI: 10.5517/ccdc.csd.cc2fbgnx
title: CCDC 2244389: Experimental Crystal Structure Determination

description: Related Article: Lukáš Hanzl, Jaromír Vinklárek, Libor Dostál, Ivana Císařová, Miroslava Litecká, Jan Honzíček|2023|RSC Advances|13|19746|doi:10.1039/D3RA03383J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7464645
title: Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection Figure Data

description: This is data for the publication, "Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection".
description: This dataset was uploaded after the manuscript was accepted.
DOI: 10.5281/zenodo.7464646
title: Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection Figure Data

description: This is data for the publication, "Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection".
DOI: 10.5281/zenodo.8154836
title: Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection Figure Data

description: This is data for the publication, "Estimates of the Wavenumber Wavelet Power Spectrum of Magnetic Fluctuations during Magnetic Reconnection".
description: This dataset was uploaded after the manuscript was accepted.
DOI: 10.6073/pasta/e528a961ecfea6a4813e3e6020441eb9
title: Soil Carbon at Forest Edges along an Urban to Rural Gradient in Massachusetts since 2018

description: Global proliferation of forest edges through anthropogenic land-use change and forest fragmentation is well documented, and while forest fragmentation has clear consequences for soil carbon (C) cycling, underlying drivers of belowground activity at the forest edge remain poorly understood. Increasing soil C losses via respiration have been observed at rural forest edges, but this process was suppressed at urban forest edges. We offer a comprehensive, coupled investigation of abiotic soil conditions and biotic soil activity from forest edge to interior at eight sites along an urbanization gradient to elucidate how environmental stressors are linked to soil C cycling at the forest edge. Despite significant diverging trends in edge soil C losses between urban and rural sites, we did not find comparable differences in soil % C or microbial enzyme activity, suggesting an unexpected decoupling of soil C fluxes and pools at forest edges. We demonstrate that across site types, soils at forest edges were less acidic than the forest interior (p less than 0.0001), and soil pH was positively correlated with soil calcium, magnesium and sodium content (adj R2 = 0.37), which were also elevated at the edge. Compared to forest interior, forest edge soils exhibited a 17.8% increase in sand content and elevated freeze-thaw frequency with probable downstream effects on root turnover and decomposition. Using these and other novel forest edge data, we demonstrate that significant variation in edge soil respiration (adj R2 = 0.46; p = 0.0002) and C content (adj R2 = 0.86; p less than 0.0001) can be explained using soil parameters often mediated by human activity (e.g., soil pH, trace metal and cation concentrations, soil temperature), and we emphasize the complex influence of multiple, simultaneous global change drivers at forest edges. Forest edge soils reflect legacies of anthropogenic land-use and modern human management, and this must be accounted for to understand soil activity and C cycling across fragmented landscapes.