cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3799324_d1
title: Additional file 1: Table S1. of The pepper virome: natural co-infection of diverse viruses and their quasispecies

description: Summary of de novo-assembled transcriptomes for two libraries using Trinity program. Table S2. Summary of MEGABLAST results to identify virus-associated contigs from PJ transcriptome. Table S3. Summary of MEGABLAST results to identify virus-associated contigs from TW transcriptome. Table S4. Summary of identified viruses in PJ and TW transcriptomes with numbers of associated viral contigs. Table S5. Single nucleotide variations of BPEV in the PJ transcriptome. Table S6. Single nucleotide variations of BPEV in the TW transcriptome. Table S7. Single nucleotide variations of PepVA in the PJ transcriptome. Table S8. Single nucleotide variations of PepVA in the TW transcriptome. Table S9. Single nucleotide variations of ChiLCV DNA-A in the PJ transcriptome. Table S10. Single nucleotide variations of ChiLCV DNA-A in the TW transcriptome. Table S11. Single nucleotide variations of PepLCV betasatellite in the PJ transcriptome. Table S12. Single nucleotide variations of PepLCV betasatellite in the TW transcriptome. Table S13. Single nucleotide variations of CYVMV alphasatellite in the PJ transcriptome. Table S14. Single nucleotide variations of CYVMV alphasatellite in the TW transcriptome. Table S15. Number of viral sequence reads and copy number for identified viruses. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3799315_d3.v1
title: Additional file 12: Table S7. of Label-free quantitative proteomics of Corynebacterium pseudotuberculosis isolates reveals differences between Biovars ovis and equi strains

description: Proteins identified in 258_equi by Proteogenomics. (XLSX 266Â kb)
DOI: 10.6084/m9.figshare.c.3799315_d3
title: Additional file 12: Table S7. of Label-free quantitative proteomics of Corynebacterium pseudotuberculosis isolates reveals differences between Biovars ovis and equi strains

description: Proteins identified in 258_equi by Proteogenomics. (XLSX 266Â kb)
DOI: 10.6084/m9.figshare.c.3801331_d1
title: Additional file 1: of Getting fat or getting help? How female mammals cope with energetic constraints on reproduction

description: List of species and data used for this study. (XLSX 22Â kb)
DOI: 10.15468/dl.vsj5hx
title: Occurrence Download

description: A dataset containing 17790 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ensis leei M.Huber, 2015"
 ]
}

 The dataset includes 17790 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039419-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsakcd
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma mavortium melanostictum (Baird, 1860))"
 ]
}

 The dataset includes 271 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039421-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14515248
title: A model and thresholds for landslide stability under the impact of various precipitation types and seasons, and earthquakes with various seismic parameters - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: A model and thresholds for landslide stability under the impact of various precipitation types and seasons, and earthquakes with various seismic parameters - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.5281/zenodo.14515249
title: A model and thresholds for landslide stability under the impact of various precipitation types and seasons, and earthquakes with various seismic parameters - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: A model and thresholds for landslide stability under the impact of various precipitation types and seasons, and earthquakes with various seismic parameters - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3801343_d2.v1
title: Additional file 2: Figure S4. of Detection of gene-environment interactions in the presence of linkage disequilibrium and noise by using genetic risk scores with internal weights from elastic net regression

description: Linkage disequilibrium (LD) between the 68 SNPs (6 risk SNPs +42 correlated SNPs +20 noise SNPs) considered in the first part of the simulation study (Weighted and unweighted GRS vs. single SNPs analysis). (XLSX 33Â kb)
DOI: 10.5284/1124608
title: Images and Site Records from a Trial Trench Evaluation at 10 Church Street, North Marston, Buckinghamshire, March 2016

description: This collection comprises of site records and photographs from a trial trench evaluation carried out by MOLA Northampton at 10 Church Street, North Marston, Buckinghamshire on 29th March 2016.
DOI: 10.15468/dl.6swd58
title: Occurrence Download

description: A dataset containing 56449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Czechia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pica pica (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 56449 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039420-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3802684_d1.v1
title: Additional file 1: of Using genotyping to delineate tuberculosis transmission in long-term care facilities: single facility 4-year experience

description: Dataset of demographic and laboratory data. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3802699_d1.v1
title: Additional file 1: of Genotyping of high-risk anal human papillomavirus (HPV): ion torrent-next generation sequencing vs. linear array

description: The tabular data used in the analyses for this manuscript is included as an excel file. This data includes both the LA and NGS results for each of the types detected on the 10 samples. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3802684_d1
title: Additional file 1: of Using genotyping to delineate tuberculosis transmission in long-term care facilities: single facility 4-year experience

description: Dataset of demographic and laboratory data. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3802699_d1
title: Additional file 1: of Genotyping of high-risk anal human papillomavirus (HPV): ion torrent-next generation sequencing vs. linear array

description: The tabular data used in the analyses for this manuscript is included as an excel file. This data includes both the LA and NGS results for each of the types detected on the 10 samples. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3802717_d1.v1
title: Additional file 10: of 100 million years of multigene family evolution: origin and evolution of the avian MHC class IIB

description: GenBank accession numbers of MHCIIB sequences retained for analysis. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3802711_d1.v1
title: Additional file 1: Table S1. of Comparison between air pollution concentrations measured at the nearest monitoring station to the delivery hospital and those measured at stations nearest the residential postal code regions of pregnant women in Fukuoka

description: Pearsonsâ   correlation coefficients for daily mean pollutant concentrations among monitoring stations in Fukuoka, 2014. Table S2. Pearsonâ  s correlation coefficients between pollutant concentrations measured at the Yoshizuka monitoring station and those at the nearest monitoring stations to the respective residential postal code regions. (XLSX 20 kb)
DOI: 10.5281/zenodo.14515192
title: Detailed maps of landslide activity, hazard and risk slopes under study and their surroundings - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Detailed maps of landslide activity, hazard and risk slopes under study and their surroundings - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.5281/zenodo.14515193
title: Detailed maps of landslide activity, hazard and risk slopes under study and their surroundings - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Detailed maps of landslide activity, hazard and risk slopes under study and their surroundings - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3804559_d4.v1
title: Additional file 4: Table S2. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Risk of bias among 222 inequality relationships from 55 included articles [45â  86, 99, 100â  111]. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3804559_d5.v1
title: Additional file 5: Table S3. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Extended risk of bias classification table of 55 included articles, to supplement Table S2, which depicts the risk of bias classification of each of the five domains for individual relationships of each article. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3804559_d5
title: Additional file 5: Table S3. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Extended risk of bias classification table of 55 included articles, to supplement Table S2, which depicts the risk of bias classification of each of the five domains for individual relationships of each article. (XLSX 21Â kb)
DOI: 10.15468/dl.2k45ve
title: Occurrence Download

description: A dataset containing 410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma mavortium nebulosum Hallowell, 1853)"
 ]
}

 The dataset includes 410 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039423-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3804559_d4
title: Additional file 4: Table S2. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Risk of bias among 222 inequality relationships from 55 included articles [45â  86, 99, 100â  111]. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3804547_d2.v1
title: Additional file 2: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Sequences included in molecular phylogenetic analysis (GenBank access). (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3804547_d2
title: Additional file 2: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Sequences included in molecular phylogenetic analysis (GenBank access). (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3804577_d2
title: Additional file 1: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: List of the 15,588 genes used as input to the UNCLES clustering analysis and the 504 and 598 genes in C1 and C2, respectively. (XLSX 411Â kb)
DOI: 10.5281/zenodo.14515156
title: Chronology of the activity of study landslides Moxi 1 and Moxi 2, Sichuan, China based on all sampled trees

description: Chronology of the activity of study landslides Moxi 1 and Moxi 2, Sichuan, China based on all sampled trees (response index values [%]).

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.5281/zenodo.14515157
title: Chronology of the activity of study landslides Moxi 1 and Moxi 2, Sichuan, China based on all sampled trees

description: Chronology of the activity of study landslides Moxi 1 and Moxi 2, Sichuan, China based on all sampled trees (response index values [%]).

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3804577_d5.v1
title: Additional file 4: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: GO term analysis of the cluster C2. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d4.v1
title: Additional file 3: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: GO term analysis of the cluster C1. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d5
title: Additional file 4: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: GO term analysis of the cluster C2. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d4
title: Additional file 3: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: GO term analysis of the cluster C1. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d6.v1
title: Additional file 5: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: Many Tables related to the analysis of the clusters C1 and C2 based on the clinical TCGA dataset. (XLSX 936Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d6
title: Additional file 5: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: Many Tables related to the analysis of the clusters C1 and C2 based on the clinical TCGA dataset. (XLSX 936Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d8.v1
title: Additional file 7: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: These Tables show the transcript factor analysis of the various clusters, sub-clusters, and hypoxia signatures. (XLSX 544Â kb)
DOI: 10.6084/m9.figshare.c.3805375_d2
title: Additional file 2: Table S2. of Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae

description: Read numbers mapping to the complete chloroplast sequences and ndhF. Number of reads mapping and mean coverage for the entire chloroplast genome and ndhF after the removal of duplicated reads. Also the proportions of all reads mapping to the chloroplast that mapped to ndhF are given. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.c.3805381_d3.v1
title: Additional file 3: of Praziquantel decreases fecundity in Schistosoma mansoni adult worms that survive treatment: evidence from a laboratory life-history trade-offs selection study

description: Lamberton et al. 2017 IDoP Raw mouse and worm data from experimental infections. (XLSX 242 KB)
DOI: 10.6084/m9.figshare.c.3805381_d3
title: Additional file 3: of Praziquantel decreases fecundity in Schistosoma mansoni adult worms that survive treatment: evidence from a laboratory life-history trade-offs selection study

description: Lamberton et al. 2017 IDoP Raw mouse and worm data from experimental infections. (XLSX 242 KB)
DOI: 10.6084/m9.figshare.c.3805384_d2.v1
title: Additional file 2: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Mapping outcome summary. This file contains information on the deep-sequencing data from kidney (raw read counts, mapping summary etc.) (XLSX 23Â kb)
DOI: 10.5281/zenodo.14515078
title: Sets of dendrochronological data with tree-ring widths recalculated into eccentricity indicators, dated events of landslide activity and detected indicators of increasing slope instability over the last 10 years - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Sets of dendrochronological data with tree-ring widths recalculated into eccentricity indicators, dated events of landslide activity and detected indicators of increasing slope instability over the last 10 years - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.5281/zenodo.14515079
title: Sets of dendrochronological data with tree-ring widths recalculated into eccentricity indicators, dated events of landslide activity and detected indicators of increasing slope instability over the last 10 years - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Sets of dendrochronological data with tree-ring widths recalculated into eccentricity indicators, dated events of landslide activity and detected indicators of increasing slope instability over the last 10 years - Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3805384_d2
title: Additional file 2: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Mapping outcome summary. This file contains information on the deep-sequencing data from kidney (raw read counts, mapping summary etc.) (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d5.v1
title: Additional file 5: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Rhythmicity parameters of 178 common rhythmic genes. This file contains the outcome of the rhythmicity analyses in kidney and liver for the 178 commonly rhythmic genes (RNA and RPF in kidney and liver; related to Fig.Â 3c). (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d4.v1
title: Additional file 4: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Rhythmicity parameters in kidney datasets. This file contains the outcome of the transcriptome-wide rhythmicity analyses on the kidney datasets (related to Fig.Â 3a). (XLSX 163Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d6.v1
title: Additional file 6: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Transcriptome-wide kidney RPF (blue) and RNA (orange) levels in the left panels (with â  error barsâ   connecting the two replicates of each timepoint) and TE in the right panels. (ZIP 116896 kb)
DOI: 10.6084/m9.figshare.c.3805384_d3.v1
title: Additional file 3: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Differential TE analysis. This file contains details of the GO-term analysis on the differential TE gene set of Fig.Â 2. (XLSX 228Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d7.v1
title: Additional file 7: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Expression plots for kidney and liver for the 178 common rhythmic genes of Fig.Â 3c. (ZIP 3338.28 kb)
DOI: 10.6084/m9.figshare.c.3805384_d3
title: Additional file 3: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Differential TE analysis. This file contains details of the GO-term analysis on the differential TE gene set of Fig.Â 2. (XLSX 228Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d6
title: Additional file 6: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Transcriptome-wide kidney RPF (blue) and RNA (orange) levels in the left panels (with â  error barsâ   connecting the two replicates of each timepoint) and TE in the right panels. (ZIP 116896 kb)
DOI: 10.6084/m9.figshare.28054115
title: Incidence dengue and climate variable in Mexico

description: Correlation of Geographic Variables with the Incidence Rate of Dengue Fever in Mexico: A 38-Year Study.Ecological study.
DOI: 10.5281/zenodo.14514897
title: Sets of processed and recalculated earthquake data with seismic events potentially triggering events of landslide activity on the Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Sets of processed and recalculated earthquake data with seismic events potentially triggering events of landslide activity on the Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.