cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25375/uct.14484552.v1
title: AFFIRM RCT: task-sharing psychological intervention for perinatal depression

description: This is a meta-data file relating to the AFFIRM randomised controlled trial assessing the effectiveness of a task-shared psychological intervention for perinatal depression in Khayelitsha, South Africa, using non-specialist community health workers. <br>A double-blind individual randomised controlled trial was conducted in two antenatal clinics in the peri-urban settlement of Khayelitsha, Cape Town. Adult pregnant women who scored 13 or above on the Edinburgh Postnatal Depression rating Scale (EPDS) were randomised into the intervention arm (structured six-session psychological treatment) or the control arm (routine antenatal health care and three monthly phone calls). The primary outcome was response on the Hamilton Depression Rating Scale (HDRS) at three months postpartum (minimum 40% score reduction from baseline) among participants who did not experience pregnancy or infant loss (modified intention-to-treat population) (registered on Clinical Trials: NCT01977326). Of 2187 eligible women approached, 425 (19.4%) screened positive on the EPDS and were randomised; 384 were included in the modified intention-to-treat analysis (control: n=200; intervention: n=184). There were no significant differences in response on the HDRS at three months postpartum between the intervention and control arm. A task-sharing psychological treatment was not effective in treating depression among women living in Khayelitsha, South Africa. The findings give cause for reflection on the strategy of task-sharing in low-resource settings.<br>Please see documents attached for more information on the AFFIRM randomised controlled trial and the questionnaire used. <br>The data are available in SPSS, Stata or CSV files, and either in long or wide format. To access the data, please contact Prof Crick Lund: crick.lund@kcl.ac.uk <br><br>
DOI: 10.5281/zenodo.4740754
title: Data release for the paper "Adding harmonics to the interpretation of the black hole mergers of GWTC-1"

description: Data release for a re-analysis of the gravitational wave signals corresponding to the ten confidently detected binary black hole mergers detected in the O1 and O2 observation runs of the international gravitational wave detector network. The analysis is performed with the IMRPhenomX and IMRPhenomT waveform model families as implemented in the LALSuite code (https://doi.org/10.7935/GT1W-FZ16) with the parallel Bilby code for gravitational wave parameter estimation. The data release corresponds to the paper "Adding harmonics to the interpretation of the black hole mergers of GWTC-1" (https://arxiv.org/abs/2105.05960), which should be cited when using these data. The data release contains posterior samples, Bilby configuration files, PSDs and calibration envelope files for events where publicly released data sets from GWOSC (https://www.gw-openscience.org/GWTC-1) are not sufficient.
DOI: 10.6084/m9.figshare.14566254
title: HIIT human skeletal muscle

description: Eleven men performed nine sessions of HIIT consisting of 10x4 minutes of cycling at 91 % of HRmax (~ 83 % of VO2peak intensity), with two minutes of rest between intervals, over the course of three weeks. The VO2peak increased by 8.7 % following training (P &lt; 0.05). Before and 3 h after the 1st and 9th exercise bout, skeletal muscle biopsies were obtained from the middle portion of the vastus lateralis muscle. Samples were visually inspected, and blood, fat and connective tissue were removed. Samples were then immediately frozen in liquid nitrogen and stored at -80°C until analysis. Participant information, testing and exercise protocol, as well as biopsy procedure have been in Ydfors et al., 2016.<br>We hypothesized that the blunting of transcription after three weeks of HIIT is specific to certain pathways, including metabolic regulation and that these genes have communal transcriptional regulation.
DOI: 10.6084/m9.figshare.14566254.v1
title: HIIT human skeletal muscle

description: Eleven men performed nine sessions of HIIT consisting of 10x4 minutes of cycling at 91 % of HRmax (~ 83 % of VO2peak intensity), with two minutes of rest between intervals, over the course of three weeks. The VO2peak increased by 8.7 % following training (P &lt; 0.05). Before and 3 h after the 1st and 9th exercise bout, skeletal muscle biopsies were obtained from the middle portion of the vastus lateralis muscle. Samples were visually inspected, and blood, fat and connective tissue were removed. Samples were then immediately frozen in liquid nitrogen and stored at -80°C until analysis. Participant information, testing and exercise protocol, as well as biopsy procedure have been in Ydfors et al., 2016.<br>We hypothesized that the blunting of transcription after three weeks of HIIT is specific to certain pathways, including metabolic regulation and that these genes have communal transcriptional regulation.
DOI: 10.7910/dvn/ybfqba
title: Replication Data for "Identifying positive and negative deviants and factors associated with healthy dietary practices among young schoolchildren in Nepal: a mixed methods study"

description: These data were used to identify the deviants and factors associated with healthy dietary habits among young schoolchildren. The data set is for anyone who wants to reproduce the work for a good cause. The secondary (quantitative) data were extracted from the previous study entitled "Nudging children toward healthier food choices: an experiment combining school and home gardens." However, the primary (qualitative) data is collected by the researcher in October 2020.
DOI: 10.5281/zenodo.4751656
title: Data release for the paper "A detailed analysis of GW190521 with phenomenological waveform models"

description: Data release for an extensive analysis of the GW190521 gravitational wave event, which is consistent with a high mass binary black hole system with a very short signal, detected during the O3a observation run of the Advanced LIGO and Virgo detectors. In this analysis we use the current generation of phenomenological waveform model families, IMRPhenomX and IMRPhenomT, as implemented in the LALSuite code (https://doi.org/10.7935/GT1W-FZ16). This data release corresponds to the paper "A detailed analysis of GW190521 with phenomenological waveform models" (https://arxiv.org/abs/2105.06360), which should be cited when using these data. It contains the posterior samples of the default runs using IMRPhenomXPHM and IMRPhenomTPHM, carried out using the Markov Chain Monte Carlo (MCMC) sampling implementation of the LALInference code and their corresponding command line.
DOI: 10.5281/zenodo.4751655
title: Data release for the paper "A detailed analysis of GW190521 with phenomenological waveform models"

description: Data release for an extensive analysis of the GW190521 gravitational wave event, which is consistent with a high mass binary black hole system with a very short signal, detected during the O3a observation run of the Advanced LIGO and Virgo detectors. In this analysis we use the current generation of phenomenological waveform model families, IMRPhenomX and IMRPhenomT, as implemented in the LALSuite code (https://doi.org/10.7935/GT1W-FZ16). This data release corresponds to the paper "A detailed analysis of GW190521 with phenomenological waveform models" (https://arxiv.org/abs/2105.06360), which should be cited when using these data. It contains the posterior samples of the default runs using IMRPhenomXPHM and IMRPhenomTPHM, carried out using the Markov Chain Monte Carlo (MCMC) sampling implementation of the LALInference code and their corresponding command line.
DOI: 10.6084/m9.figshare.14595567
title: Antibiotic residues in the environment: a table, an index and some reflections

description: This data describes: <br><br>- antibiotic residue information in the environment, obtained from the scientific literature (Antibiotic Residue Table or ART); <br>- ART extended with other antibiotic-relevant data and aggregated into an Antibiotic Residue Index (ARI); <br>- and a correlation analysis where we relate the factors in the ARI are compared. <br>More detail information about the data can be found in the first tab of the document. <br><br>As can be deducted from this data set, antibiotic residue is omnipresent in the environment, and the concentration and variation depend on the region and matrix (such as soil, ground water, etc). When we compare quantifiers that make out the ARI, the high correlations are observed between “resistance” and “on-line demand”; and “Resistance” and “Essential Medicines” are striking. <br><br>As a conclusion, the consumer segment may play a larger role in antibiotic resistance than currently anticipated. Market places, search engine platforms, and individuals should challenge themselves to become active stakeholders in the management and sustainability of antibiotic consumption, which could lead to an optimized and unanticipated prioritization in risk management and problem solving with respect to this critically important group of medicines. <br><br>
DOI: 10.6084/m9.figshare.14595567.v1
title: Antibiotic residues in the environment: a table, an index and some reflections

description: This data describes: <br><br>- antibiotic residue information in the environment, obtained from the scientific literature (Antibiotic Residue Table or ART); <br>- ART extended with other antibiotic-relevant data and aggregated into an Antibiotic Residue Index (ARI); <br>- and a correlation analysis where we relate the factors in the ARI are compared. <br>More detail information about the data can be found in the first tab of the document. <br><br>As can be deducted from this data set, antibiotic residue is omnipresent in the environment, and the concentration and variation depend on the region and matrix (such as soil, ground water, etc). When we compare quantifiers that make out the ARI, the high correlations are observed between “resistance” and “on-line demand”; and “Resistance” and “Essential Medicines” are striking. <br><br>As a conclusion, the consumer segment may play a larger role in antibiotic resistance than currently anticipated. Market places, search engine platforms, and individuals should challenge themselves to become active stakeholders in the management and sustainability of antibiotic consumption, which could lead to an optimized and unanticipated prioritization in risk management and problem solving with respect to this critically important group of medicines. <br><br>
DOI: 10.34619/a27q-1ryd
title: OntoCork

description: OntoCork is a micro domain-ontology of cork stoppers. The purpose of this domain-ontology is to organise cork stoppers – concepts and terms – in a systematic way. The ultimate purpose of the ontology is to systematise the operations intervening in the manufacturing process of cork stoppers depending on the purpose of each operation in order to obtain a classification of each type of stoppers. Finally, this classification aims at providing information on the manufacturing phase of the stopper regarding its stage of completion within the manufacturing process. The aim is to build an e-dictionary, designed as a multilingual and multimodal product, where linguistic and conceptual resources are paired to facilitate knowledge acquisition. OntoCork is being developed in OWL. The formal definitions are inferred from CorkCorpus - a specialised corpus built from scratch.
description: Ramos, M., 2020, OntoCork.
DOI: 10.5281/zenodo.4713391
title: Incomplete Systemic Recovery and Metabolic Phenoreversion in Post-Acute Phase Non-Hospitalized COVID-19 Patients: Implications for Assessment of Post Acute COVID-19 Syndrome

description: <strong>We present a multivariate metabotyping approach to assess the functional recovery of non-hospitalized COVID-19 patients and the possible biochemical sequelae of “Post Acute COVID-19 Syndrome”, colloquially known as long-COVID. Blood samples were taken from patients ca. 3 months post-acute COVID-19 infection who were also assessed symptomatically at 6 months. Some 57% of patients had one or more persistent symptoms including respiratory-related symptoms cough, dyspnoea and rhinorrhea or other non-respiratory symptoms including chronic fatigue, anosmia, myalgia, joint pain. Plasma samples were quantitatively analysed for lipoproteins, glycoproteins, amino acids, biogenic amines and tryptophan pathway intermediates using NMR spectroscopy and mass spectrometry. Metabolic data for the follow-up patients (n=27) were compared with controls (n=41) and hospitalized SARS CoV-2 positive patients (n=18, with multiple time-points). Univariate and multivariate statistics revealed variable patterns of functional recovery with many patients exhibiting residual COVID-19 biomarker signatures. Several parameters were persistently pathophysiological, e.g. elevated taurine (p= 3.6 x 10-3 vs controls) and reduced glutamine/glutamate ratio (p = 6.95 x 10-8 vs controls) indicative of possible liver and muscle damage and a high energy demand linked to more generalized tissue repair or immune function. Some parameters showed near complete normalization, e.g. the plasma apolipoprotein B100/A1 ratio was similar to healthy controls, but significantly lower (p= 4.2 x 10-3) than acute COVID-19 patients, reflecting partial phenoreversion towards the healthy metabolic state. Plasma neopterin was normalized in all follow-up patients indicative of reduction in adaptive immune activity that has been previously detected in active SARS-CoV-2 infection. Other systemic inflammatory biomarkers such as GlycA and the kynurenine/tryptophan ratio remained elevated in some, but not all, patients. Correlation analysis, PCA and OPLS-DA showed that the follow-up patients were as a group metabolically distinct from controls and partially co-mapping with the acute phase patients. Significant systematic metabolic differences between asymptomatic and symptomatic follow-up patients were also observed for multiple metabolites. The overall metabolic variance of the symptomatic patients was significantly greater than non-symptomatic patients for multiple parameters (Chi-squared P=0.014). Thus, asymptomatic follow-up patients including those with “Post-COVID Syndrome” display a spectrum of multiple persistent biochemical pathophysiology suggesting that the metabolic phenotyping approach may be deployed for multi-system functional assessment of individual post-COVID-19 patients.</strong>
DOI: 10.5281/zenodo.4713390
title: Incomplete Systemic Recovery and Metabolic Phenoreversion in Post-Acute Phase Non-Hospitalized COVID-19 Patients: Implications for Assessment of Post Acute COVID-19 Syndrome

description: <strong>We present a multivariate metabotyping approach to assess the functional recovery of non-hospitalized COVID-19 patients and the possible biochemical sequelae of “Post Acute COVID-19 Syndrome”, colloquially known as long-COVID. Blood samples were taken from patients ca. 3 months post-acute COVID-19 infection who were also assessed symptomatically at 6 months. Some 57% of patients had one or more persistent symptoms including respiratory-related symptoms cough, dyspnoea and rhinorrhea or other non-respiratory symptoms including chronic fatigue, anosmia, myalgia, joint pain. Plasma samples were quantitatively analysed for lipoproteins, glycoproteins, amino acids, biogenic amines and tryptophan pathway intermediates using NMR spectroscopy and mass spectrometry. Metabolic data for the follow-up patients (n=27) were compared with controls (n=41) and hospitalized SARS CoV-2 positive patients (n=18, with multiple time-points). Univariate and multivariate statistics revealed variable patterns of functional recovery with many patients exhibiting residual COVID-19 biomarker signatures. Several parameters were persistently pathophysiological, e.g. elevated taurine (p= 3.6 x 10-3 vs controls) and reduced glutamine/glutamate ratio (p = 6.95 x 10-8 vs controls) indicative of possible liver and muscle damage and a high energy demand linked to more generalized tissue repair or immune function. Some parameters showed near complete normalization, e.g. the plasma apolipoprotein B100/A1 ratio was similar to healthy controls, but significantly lower (p= 4.2 x 10-3) than acute COVID-19 patients, reflecting partial phenoreversion towards the healthy metabolic state. Plasma neopterin was normalized in all follow-up patients indicative of reduction in adaptive immune activity that has been previously detected in active SARS-CoV-2 infection. Other systemic inflammatory biomarkers such as GlycA and the kynurenine/tryptophan ratio remained elevated in some, but not all, patients. Correlation analysis, PCA and OPLS-DA showed that the follow-up patients were as a group metabolically distinct from controls and partially co-mapping with the acute phase patients. Significant systematic metabolic differences between asymptomatic and symptomatic follow-up patients were also observed for multiple metabolites. The overall metabolic variance of the symptomatic patients was significantly greater than non-symptomatic patients for multiple parameters (Chi-squared P=0.014). Thus, asymptomatic follow-up patients including those with “Post-COVID Syndrome” display a spectrum of multiple persistent biochemical pathophysiology suggesting that the metabolic phenotyping approach may be deployed for multi-system functional assessment of individual post-COVID-19 patients.</strong>
DOI: 10.5517/ccdc.csd.cc245rqt
title: CCDC 1971746: Experimental Crystal Structure Determination

description: Related Article: Muxin Yu, Caiping Liu, Shengchang Li, Yunfang Zhao, Jiangquan Lv, Zhu Zhuo, Feilong Jiang, Lian Chen, Yunlong Yu, Maochun Hong|2020|Chem.Commun.|56|7233|doi:10.1039/D0CC02472D
DOI: 10.5517/ccdc.csd.cc271w28
title: CCDC 2057379: Experimental Crystal Structure Determination

description: Related Article: Tao Zhou, Pu-Fan Qian, Jun-Yi Li, Yi-Bo Zhou, Hao-Chen Li, Hao-Yu Chen, Bing-Feng Shi|2021|J.Am.Chem.Soc.|143|6810|doi:10.1021/jacs.1c03111
DOI: 10.5517/ccdc.csd.cc271w39
title: CCDC 2057380: Experimental Crystal Structure Determination

description: Related Article: Tao Zhou, Pu-Fan Qian, Jun-Yi Li, Yi-Bo Zhou, Hao-Chen Li, Hao-Yu Chen, Bing-Feng Shi|2021|J.Am.Chem.Soc.|143|6810|doi:10.1021/jacs.1c03111
DOI: 10.5517/ccdc.csd.cc27407n
title: CCDC 2059430: Experimental Crystal Structure Determination

description: Related Article: Jacob Soley, Scott D. Taylor|2021|J.Org.Chem.|86|6577|doi:10.1021/acs.joc.1c00378
DOI: 10.5517/ccdc.csd.cc277hzz
title: CCDC 2062801: Experimental Crystal Structure Determination

description: Related Article: Nereida Hidalgo, Carlos Romero-Pérez, Celia Maya, Israel Fernández, Jesús Campos|2021|Organometallics|40|1113|doi:10.1021/acs.organomet.1c00088
DOI: 10.5517/ccdc.csd.cc277vdr
title: CCDC 2063124: Experimental Crystal Structure Determination

description: Related Article: Jonas Groos, Philipp M. Hauser, Maximilian Koy, Wolfgang Frey, Michael R. Buchmeiser|2021|Organometallics|40|1178|doi:10.1021/acs.organomet.1c00175
DOI: 10.5517/ccdc.csd.cc277vfs
title: CCDC 2063125: Experimental Crystal Structure Determination

description: Related Article: Jonas Groos, Philipp M. Hauser, Maximilian Koy, Wolfgang Frey, Michael R. Buchmeiser|2021|Organometallics|40|1178|doi:10.1021/acs.organomet.1c00175
DOI: 10.5517/ccdc.csd.cc26rlbx
title: CCDC 2048459: Experimental Crystal Structure Determination

description: Related Article: Meng-Hua Li, Ming-Hua You, Mei-Jin Lin|2021|Cryst.Growth Des.|21|2856|doi:10.1021/acs.cgd.1c00043
DOI: 10.5517/ccdc.csd.cc26rlcy
title: CCDC 2048460: Experimental Crystal Structure Determination

description: Related Article: Meng-Hua Li, Ming-Hua You, Mei-Jin Lin|2021|Cryst.Growth Des.|21|2856|doi:10.1021/acs.cgd.1c00043
DOI: 10.3886/e119930v1-86620
title: Italy and the Little Divergence in Wages and Prices

description: This is the replication package necessary for replicating graphs and tables found in the journal article titled, "Italy and the Little Divergence in Wages and Prices: New Data, New Results".
DOI: 10.5281/zenodo.4761519
title: Alien species in National Parks Database

description: Alien species that are present in national parks. See Spear et al. 2011 Koedoe
DOI: 10.5281/zenodo.4761518
title: Alien species in National Parks Database

description: Alien species that are present in national parks. See Spear et al. 2011 Koedoe
DOI: 10.5281/zenodo.4761517
title: Red-listed species impacted by aliens in South Africa

description: Red-listed species impacted by aliens in South Africa. Numbers of species impacted by aliens and numbers of species that are impacted by aliens that have changed risk categories between consecutive assessments.
DOI: 10.5281/zenodo.4761516
title: Red-listed species impacted by aliens in South Africa

description: Red-listed species impacted by aliens in South Africa. Numbers of species impacted by aliens and numbers of species that are impacted by aliens that have changed risk categories between consecutive assessments.
DOI: 10.5281/zenodo.4761527
title: Training dataset for dysgu

description: Dysgu is a structural variant caller that employs a machine learning classifier for stratifying variants by quality. The machine learning model was trained using this dataset.
description: The dataset is a csv file
DOI: 10.5281/zenodo.4761526
title: Training dataset for dysgu

description: Dysgu is a structural variant caller that employs a machine learning classifier for stratifying variants by quality. The machine learning model was trained using this dataset.
description: The dataset is a csv file
DOI: 10.5281/zenodo.4761513
title: National parks impact and pathways database for plants

description: A database of potential impacts and possible pathways of introduction for alien plants in national parks in South Africa.
DOI: 10.5281/zenodo.4761512
title: National parks impact and pathways database for plants

description: A database of potential impacts and possible pathways of introduction for alien plants in national parks in South Africa.
DOI: 10.5281/zenodo.4761509
title: Summary of responses from experts that assessed lists of alien species for different countries

description: See McGeoch et al. 2012 Ecol Applications. Experts were sent lists of aliens (for different taxa in different countries) and asked to assess the lists for whether they agreed, did not agree or did not know whether the species should be listed as alien for that country. Experts were also asked to add species to lists. The lists assessed were those compiled for the global invasive alien species indicator database.
DOI: 10.5281/zenodo.4761508
title: Summary of responses from experts that assessed lists of alien species for different countries

description: See McGeoch et al. 2012 Ecol Applications. Experts were sent lists of aliens (for different taxa in different countries) and asked to assess the lists for whether they agreed, did not agree or did not know whether the species should be listed as alien for that country. Experts were also asked to add species to lists. The lists assessed were those compiled for the global invasive alien species indicator database.
DOI: 10.5281/zenodo.4761507
title: A measure of data availability on alien species for countries globally

description: See McGeoch et al. 2010. Data availability is based on information from national reports and Pyšek et al. 2008.
DOI: 10.5281/zenodo.4761506
title: A measure of data availability on alien species for countries globally

description: See McGeoch et al. 2010. Data availability is based on information from national reports and Pyšek et al. 2008.
DOI: 10.5281/zenodo.4761504
title: Animals in parks database

description: A database of animals in national parks in South Africa, their potential impacts and possible pathways of introduction. There is severity of impact information for a subset of species considered to be those species with the most impacts.