cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3602976.v1
title: Read all about it!? Public accountability, fragmented global climate governance and the media

description: The way that the media reports and comments on key events in the fragmented global climate governance landscape is one important route to strengthening public accountability of such governance. Editorials and other opinion pieces provide key contributions to the public sphere, but have been almost entirely neglected in media research on climate change. Another understudied aspect in such research is the reporting on the fragmentation of global climate governance across numerous forums. This article provides an exploratory approach to address these two research gaps. It presents a quantitative analysis of how often leading newspapers in seven countries (Finland, India, Laos, Norway, South Africa, UK and USA) wrote about 18 meetings in six different global climate governance forums between 2004–2009 and whether they provided commentaries about them. The study shows that media coverage (articles and opinion pieces) is limited or absent for many meetings that are not attended by heads of state, are the launch of a new process or do not have the convening power of the United Nations Framework Convention on Climate Change. The pattern of coverage differs significantly among individual newspapers and there is no clear distinction between developed and developing country newspapers. The article concludes that overall news coverage, and editorial commentary in particular, of global climate meetings in the selected newspapers is too low and too patchy to significantly support domestic publics to hold their own (and indirectly other) governments accountable with regard to fragmented global climate governance. <b>Policy relevance</b> This study is instructive for the media and civil society, who should both act as accountholders of governments with regard to how they act in global climate governance and its implementation. Reporting and commentaries need to reflect the overarching process, not only sporadic coverage of high-level meetings, but also critical analysis of what is achieved. They should also take a broader scope in terms of the kinds of meetings and processes in global governance that they cover. Civil society should encourage the media to increase coverage along these lines, e.g. by adequate monitoring of government actions (or lack thereof) and share this with the media.
DOI: 10.6084/m9.figshare.3600504
title: Public data archiving of our Marine Biology study: Do the abundance and diversity of fishes vary with the size and the type of coral?

description: R script used for our analysis during our marine study. Learn more about our project on our site, the link to it is written below.
DOI: 10.6084/m9.figshare.3600504.v1
title: R Script Analysis

description: R codes used for our analysis of our data.
DOI: 10.6084/m9.figshare.3600504.v2
title: Public data archiving of our Marine Biology study. Do the abundance and diversity of fishes vary with the size and the type of coral?

description: R script used for our analysis during our marine study. Learn more about our project on our site, the link to it is written below.
DOI: 10.6084/m9.figshare.3600321
title: Plos.dta

description: A dataset for relocation decision after Hurricane Sandy。
DOI: 10.6084/m9.figshare.3600138.v1
title: R Script Analysis

description: R codes used for our analysis of our data.
DOI: 10.6084/m9.figshare.3599112
title: Public data archiving of our Marine biology study: Do the abundance and diversity of fishes vary with the size and the type of corals?

description: Data collection of all observations made during our marine project. Learn more about it on our website, the link to it is written below.
DOI: 10.6084/m9.figshare.3599112.v1
title: Data collection

description: Data collection of all observations made during our marine project.
DOI: 10.6084/m9.figshare.3599112.v2
title: Public data archiving in Marine biology. Do the abundance and the diversity of fishes vary with the size and the type of corals?

description: Data collection of all observations made during our marine project. Learn more about it on our website, the link to it is written below.
DOI: 10.6084/m9.figshare.3599112.v3
title: Public data archiving of our Marine biology study. Do the abundance and the diversity of fishes vary with the size and the type of corals?

description: Data collection of all observations made during our marine project. Learn more about it on our website, the link to it is written below.
DOI: 10.6084/m9.figshare.3599112.v5
title: Public data archiving of our Marine biology study: Do the abundance and diversity of fishes vary with the size and the type of corals?

description: Data collection of all observations made during our marine project. Learn more about it on our website, the link to it is written below.
DOI: 10.6084/m9.figshare.3599112.v4
title: Public data archiving of our Marine biology study. Do the abundance and diversity of fishes vary with the size and the type of corals?

description: Data collection of all observations made during our marine project. Learn more about it on our website, the link to it is written below.
DOI: 10.6084/m9.figshare.3595677
title: Supplementary Material for: Extra- and Intraluminal Elastase Induce Morphologically Distinct Abdominal Aortic Aneurysms in Mice and Thus Represent Specific Subtypes of Human Disease

description: Topical application of elastase to induce arterial aneurysm formation is an emerging murine model of vascular disease. In the context of aortic abdominal aneurysm (AAA), angiotensin II infusion and porcine pancreatic elastase perfusion models are commonly used today. This study, therefore, compares matrix remodeling, inflammation, and angiogenesis as distinct features of aneurysms in two models treated with intra-/extraluminal elastase. C57BL/6 mice underwent intra-/extraluminal elastase application via laparotomy and were followed up for 4 weeks. Basic histology and immunohistochemistry were performed at different time points along with transmission electron microscopy, PCR analysis, TUNEL assays, and blood analysis. Both models did not differ in aneurysm growth rate, but they showed distinct features and results depending on the way of elastase application. Extraluminal aneurysm induction preserved endothelial cell function and elastic fibers but showed ongoing acute inflammation, mainly in the adventitia. The destruction of elastic layers followed by chronic inflammation was a characteristic of intraluminal elastase perfusion, as well as medial angiogenesis, a key feature in human AAA. Different animal models harbor different features of human AAA and must, therefore, be chosen wisely. External elastase application mimics an acute inflammatory aneurysm, whereas intraluminal elastase perfusion shows chronic inflammation with angiogenesis and endothelial destruction, thus better mimicking human disease.
DOI: 10.6084/m9.figshare.3595134
title: Graph-based modeling of the bibliographic items and linked open data for the citation records

description: We present <i>VIVO-ISF ontology-driven modeling</i> of the scholarly works, originally recorded in <i>Symplectic Elements</i>. Initially, we concentrated on the “academic article” category only. For the academic articles, Elements captures the title of the article, list of the persons and their contribution roles (such as authors, editors, translators), journal title, volume number, issue, ISSN, DOI, publication status, pagination etc. - named as “<i>Citation Items</i>”. The data for these citation items may or may not be available in every internal/external data source and may also vary among available data sources. This leads to recording multiple versions of the same academic article - named as “<i>Version Entries</i>”. The version entries of an article are formalized using a graph-based approach. We used attributed graphs. Graphs with node and edge attribution are typed over an attribute type graph (ATG). <i>Attributed graphs</i> (AG) ensure that all edges and nodes of a graph are typed over ATG and each node is either a source or target (or both). We present our graph-based model, outcomes of the analysis of the version entries graph and the process of the merge of the different version entries graph into a single record - known an Uber Record.
DOI: 10.6084/m9.figshare.3594378
title: Supplementary Material for: Somatic Mosaicism in Bulls Estimated from Genome-Wide CNV Array and TSPY Gene Copy Numbers

description: Somatic mosaicism has become a focus in human research due to the implications of individual genetic variability in disease. Here, we assessed somatic copy number variations (CNVs) in Holstein bulls in 2 respects. We estimated genome-wide CNVs and assayed CNVs of the <i>TSPY</i> gene, the most variable bovine gene from the Y chromosome. Somatic tissues (blood, lung, heart, muscle, testis, and brain) of 4 bulls were arrayed on the Illumina Bovine SNP50k chip and qPCR tested for <i>TSPY</i> copy numbers. Our results showed extensive copy number divergence in tissues within the same animal as well as significant copy number alterations of <i>TSPY</i>. We detected a mean of 31 CNVs per animal among which 14 were of germline origin, as they were constantly present in all investigated tissues of the animal, while 18 were specific to 1 tissue. Thus, 57% of the total number of detected CNVs was the result of de novo somatic events. Further, <i>TSPY</i> copy number was found to vary significantly among tissues as well as among the same tissue type from different animals in a wide range from 7 to 224% of the calibrator. Our study shows significant autosomal and Y-chromosomal de novo somatic CNV in bulls.
DOI: 10.6084/m9.figshare.3594378.v1
title: Supplementary Material for: Somatic Mosaicism in Bulls Estimated from Genome-Wide CNV Array and TSPY Gene Copy Numbers

description: Somatic mosaicism has become a focus in human research due to the implications of individual genetic variability in disease. Here, we assessed somatic copy number variations (CNVs) in Holstein bulls in 2 respects. We estimated genome-wide CNVs and assayed CNVs of the <i>TSPY</i> gene, the most variable bovine gene from the Y chromosome. Somatic tissues (blood, lung, heart, muscle, testis, and brain) of 4 bulls were arrayed on the Illumina Bovine SNP50k chip and qPCR tested for <i>TSPY</i> copy numbers. Our results showed extensive copy number divergence in tissues within the same animal as well as significant copy number alterations of <i>TSPY</i>. We detected a mean of 31 CNVs per animal among which 14 were of germline origin, as they were constantly present in all investigated tissues of the animal, while 18 were specific to 1 tissue. Thus, 57% of the total number of detected CNVs was the result of de novo somatic events. Further, <i>TSPY</i> copy number was found to vary significantly among tissues as well as among the same tissue type from different animals in a wide range from 7 to 224% of the calibrator. Our study shows significant autosomal and Y-chromosomal de novo somatic CNV in bulls.
DOI: 10.6084/m9.figshare.3593370
title: Bispectrum & Basic Phase-Retrieval codes for single-shot imaging of hidden object through scattering layers

description: We provide the matlab codes to realize imaging through scattering medium with a single scattered light camera image via bispectrum analysis and iterative phase-retrieval algorithm, respectively. And also, we provide experimental data for the start.<br><b>For detailed and physical information of the codes, we recommend the users the following two papers:</b><br><b>[1]</b>. O. Katz, P. Heidmann, M. Fink, and S. Gigan, "Non-invasive single-shot imaging through scattering layers and around corners via speckle correlations, "Nat Photonics 8, 784-790 (2014)<b>[2]</b>. T. Wu, O. Katz, X. Shao, S. Gigan, "Single-shot diffraction-limited imaging through scattering layers via bispectrum analysis," pre-print in arXiv. <br>
DOI: 10.6084/m9.figshare.3593370.v2
title: Bispectrum & Basic Phase-Retrieval codes for single-shot imaging of hidden object through scattering layers

description: We provide the matlab codes to realize imaging through scattering medium with a single scattered light camera image via bispectrum analysis and iterative phase-retrieval algorithm, respectively. And also, we provide experimental data for the start.<br><b>For detailed and physical information of the codes, we recommend the users the following two papers:</b><br><b>[1]</b>. O. Katz, P. Heidmann, M. Fink, and S. Gigan, "Non-invasive single-shot imaging through scattering layers and around corners via speckle correlations, "Nat Photonics 8, 784-790 (2014)<b>[2]</b>. T. Wu, O. Katz, X. Shao, S. Gigan, "Single-shot diffraction-limited imaging through scattering layers via bispectrum analysis," pre-print in arXiv. <br>
DOI: 10.6084/m9.figshare.3593349
title: Trivias items

description: Trivia items used in the fMRI study "<b>Complementary roles of the striatum and the ventromedial prefrontal cortex in the neural valuation of knowledge</b>"<br>These two lists of 30 items have been translated from French.They are matched for character count, word count, and ratings of curiosity, surprise, and interest.
DOI: 10.6084/m9.figshare.3593349.v1
title: Trivias items

description: Trivia items used in the fMRI study "<b>Complementary roles of the striatum and the ventromedial prefrontal cortex in the neural valuation of knowledge</b>"<br>These two lists of 30 items have been translated from French.They are matched for character count, word count, and ratings of curiosity, surprise, and interest.
DOI: 10.6084/m9.figshare.3593334
title: Supplementary Material for: Temporal Patterns of Gene Expression Profiles in the Neonatal Mouse Lung after Hypoxia-Reoxygenation

description: <b><i>Background:</i></b> One out of four children with neonatal asphyxia has lung involvement. Still, there has been little research on injury mechanisms of hypoxia-reoxygenation in the neonatal lung. <b><i>Objectives:</i></b> To make a temporal profile of the gene expression changes of 44 a priori selected genes after hypoxia-reoxygenation in the newborn mouse lung, and to compare the changes after hyperoxic and normoxic reoxygenation. <b><i>Methods:</i></b> Postnatal day 7 mice were randomized to 2-hour hypoxia (8% O<sub>2</sub>) and 30-min reoxygenation in either 60% O<sub>2</sub> or air. After 0-72 h of observation, gene expression changes and protein concentrations in whole lung homogenates were examined. <b><i>Results:</i></b> Immediately after completed reoxygenation, 7 genes of mediators of inflammation were downregulated, and there was an antiapoptotic gene expression pattern. Three DNA glycosylases were downregulated, while genes involved in cell cycle renewal indicated both increased and decreased cell cycle arrest. <i>Sod1</i> (T2.5h median H60: 1.01, H21: 0.88, p = 0.005; T5h median H60: 1.04, H21: 0.85, p = 0.038) and <i>Il1b</i> (T0h median H60: 0.86, H21: 1.08, p = 0.021) were significantly differentially expressed when comparing hyperoxic and normoxic reoxygenation. <b><i>Conclusion:</i></b> In this newborn mouse lung hypoxia-reoxygenation model, we found downregulation of genes of mediators of inflammation, an antiapoptotic gene expression pattern, and downregulation of DNA glycosylases. <i>Sod1</i> and <i>Il1b</i> were significantly differentially expressed when comparing reoxygenation using 60% O<sub>2</sub> with air.<br>
DOI: 10.6084/m9.figshare.3593334.v1
title: Supplementary Material for: Temporal Patterns of Gene Expression Profiles in the Neonatal Mouse Lung after Hypoxia-Reoxygenation

description: <b><i>Background:</i></b> One out of four children with neonatal asphyxia has lung involvement. Still, there has been little research on injury mechanisms of hypoxia-reoxygenation in the neonatal lung. <b><i>Objectives:</i></b> To make a temporal profile of the gene expression changes of 44 a priori selected genes after hypoxia-reoxygenation in the newborn mouse lung, and to compare the changes after hyperoxic and normoxic reoxygenation. <b><i>Methods:</i></b> Postnatal day 7 mice were randomized to 2-hour hypoxia (8% O<sub>2</sub>) and 30-min reoxygenation in either 60% O<sub>2</sub> or air. After 0-72 h of observation, gene expression changes and protein concentrations in whole lung homogenates were examined. <b><i>Results:</i></b> Immediately after completed reoxygenation, 7 genes of mediators of inflammation were downregulated, and there was an antiapoptotic gene expression pattern. Three DNA glycosylases were downregulated, while genes involved in cell cycle renewal indicated both increased and decreased cell cycle arrest. <i>Sod1</i> (T2.5h median H60: 1.01, H21: 0.88, p = 0.005; T5h median H60: 1.04, H21: 0.85, p = 0.038) and <i>Il1b</i> (T0h median H60: 0.86, H21: 1.08, p = 0.021) were significantly differentially expressed when comparing hyperoxic and normoxic reoxygenation. <b><i>Conclusion:</i></b> In this newborn mouse lung hypoxia-reoxygenation model, we found downregulation of genes of mediators of inflammation, an antiapoptotic gene expression pattern, and downregulation of DNA glycosylases. <i>Sod1</i> and <i>Il1b</i> were significantly differentially expressed when comparing reoxygenation using 60% O<sub>2</sub> with air.<br>
DOI: 10.6084/m9.figshare.3593325
title: Systematic Review Protocol

description: This protocol outlines the search strategy adopted, the key terms used, the inclusion and exclusion criteria, and the filtering process followed by the researchers. It offers a road map for other researchers who wish to conduct systematic reviews in the same or in similar fields.
DOI: 10.6084/m9.figshare.3593310
title: Penaeid and carid community changes in the St Lucia estuarine lake system, South Africa, under low water level, extended closed periods and marine reconnection conditions

description: Penaeid and carid communities were assessed in St Lucia over a wide range of saline conditions, water level conditions and mouth states, including a six-month marine connection and various connections to the Mfolozi Estuary. Samples were collected biannually in spring and autumn from November 2004 to May 2012 using seine nets. Seven penaeid and seven carid species were recorded, of which <i>Palaemon pacificus</i>, <i>P. peringueyi</i>, <i>Penaeus indicus</i> and <i>Metapenaeus monoceros</i> were the most abundant. The decline from 2004 to 2007 in both species recorded and densities of freshwater, estuarine and marine species during the initial closed period was linked to increased salinity, lack of recruitment and reduced estuarine surface area. Increased wave action and high seas following Cyclone Gamede opened the mouth in March 2007 after a 57-month closed period, resulting in recruitment of marine species, predominantly <i>P. indicus</i>, followed by a decline in densities after reclosure in August 2007. Increases in marine and freshwater species were evident after Mfolozi flood connections during 2008, 2009 and 2010. Highest densities were recorded after breaching in 2007 and after flood connections, highlighting the importance of a marine link to maintain the recruitment of penaeid species.
DOI: 10.6084/m9.figshare.3593310.v2
title: Penaeid and carid community changes in the St Lucia estuarine lake system, South Africa, under low water level, extended closed periods and marine reconnection conditions

description: Penaeid and carid communities were assessed in St Lucia over a wide range of saline conditions, water level conditions and mouth states, including a six-month marine connection and various connections to the Mfolozi Estuary. Samples were collected biannually in spring and autumn from November 2004 to May 2012 using seine nets. Seven penaeid and seven carid species were recorded, of which <i>Palaemon pacificus</i>, <i>P. peringueyi</i>, <i>Penaeus indicus</i> and <i>Metapenaeus monoceros</i> were the most abundant. The decline from 2004 to 2007 in both species recorded and densities of freshwater, estuarine and marine species during the initial closed period was linked to increased salinity, lack of recruitment and reduced estuarine surface area. Increased wave action and high seas following Cyclone Gamede opened the mouth in March 2007 after a 57-month closed period, resulting in recruitment of marine species, predominantly <i>P. indicus</i>, followed by a decline in densities after reclosure in August 2007. Increases in marine and freshwater species were evident after Mfolozi flood connections during 2008, 2009 and 2010. Highest densities were recorded after breaching in 2007 and after flood connections, highlighting the importance of a marine link to maintain the recruitment of penaeid species.
DOI: 10.6084/m9.figshare.3593310.v1
title: Penaeid and carid community changes in the St Lucia estuarine lake system, South Africa, under low water level, extended closed periods and marine reconnection conditions

description: Penaeid and carid communities were assessed in St Lucia over a wide range of saline conditions, water level conditions and mouth states, including a six-month marine connection and various connections to the Mfolozi Estuary. Samples were collected biannually in spring and autumn from November 2004 to May 2012 using seine nets. Seven penaeid and seven carid species were recorded, of which <i>Palaemon pacificus</i>, <i>P. peringueyi</i>, <i>Penaeus indicus</i> and <i>Metapenaeus monoceros</i> were the most abundant. The decline from 2004 to 2007 in both species recorded and densities of freshwater, estuarine and marine species during the initial closed period was linked to increased salinity, lack of recruitment and reduced estuarine surface area. Increased wave action and high seas following Cyclone Gamede opened the mouth in March 2007 after a 57-month closed period, resulting in recruitment of marine species, predominantly <i>P. indicus</i>, followed by a decline in densities after reclosure in August 2007. Increases in marine and freshwater species were evident after Mfolozi flood connections during 2008, 2009 and 2010. Highest densities were recorded after breaching in 2007 and after flood connections, highlighting the importance of a marine link to maintain the recruitment of penaeid species.
DOI: 10.6084/m9.figshare.3593292
title: Supplementary Material for: Genotype/Phenotype Analysis in 67 Chinese Patients with Gitelman's Syndrome

description: <b><i>Background:</i></b> Gitelman's syndrome (GS) is an autosomal recessive renal tubular disorder, which is caused by the mutations in <i>SLC12A3</i>. This study was designed to analyze the characteristics of the genotype and phenotype, and follow-up in the largest group of Chinese patients with GS. <b><i>Methods:</i></b> Sixty-seven patients with GS underwent <i>SLCl2A3</i> analysis, and their clinical characteristics and biochemical findings as well as follow-up were reviewed, aiming to achieve a better description of GS. Additionally, the association of genotype and phenotype was explored. <b><i>Results:</i></b> Forty-one different mutations were identified within these 67 GS patients, including 11 novel mutations and 5 recurrent ones. Typical hypocalciuria and hypomagnesemia were not found in 6 (9%) and 8 (11.9%) patients, respectively. Male patients and those harboring severe mutations in both alleles had significant higher urinary fractional excretion (FE) of potassium, magnesium and chlorine. In addition, there were 2 patients who had chronic kidney disease (estimated glomerular filtration rate &lt;60 ml/min/1.73 m<sup>2</sup>) and 32 patients with abnormal glucose metabolism. <b><i>Conclusions:</i></b> We identified 41 mutations related to GS, containing 11 novel variants and 5 high-frequency ones, which should facilitate earlier and more accurate diagnosis of GS. FE of electrolytes in urine may be more sensitive in the phenotype evaluation and differential diagnosis than corresponding serum electrolytes. Hypokalemia and hypomagnesemia in GS were difficult to correct; however, spironolactone might be helpful for hypokalemia to some degree. Compared with normal people, patients with GS were at higher risk of developing type 2 diabetes.