cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/48xw9hxvpm.1
title: Members of a Family of Zinc Finger Proteins Demarcate Chromatin Boundaries at Hox Clusters during Development, Ortabozkoyun et. al.

description: Partitioning of repressive from actively transcribed chromatin in mammalian cells fosters cell-type specific gene expression patterns. While this partitioning is reconstructed during differentiation, the chromatin occupancy of the key insulator, CTCF, is unchanged at the developmentally important Hox clusters. Thus, dynamic changes in chromatin boundaries must entail other activities. Given its requirement for chromatin loop formation, we examined cohesin-based chromatin occupancy without known insulators, CTCF and MAZ, and identified a novel family of zinc finger proteins (ZNFs), some of which exhibit tissue-specific expression. Two such ZNFs foster chromatin boundaries at the Hox clusters that are distinct from each other and from MAZ. PATZ1 was critical to the thoracolumbar boundary in differentiating motor neurons and mouse skeleton, while ZNF263 contributed to cervicothoracic boundaries. We propose that these novel insulating activities act with cohesin, alone or combinatorially, with or without CTCF, to implement precise positional identity and cell fate during development.
DOI: 10.17632/5vdmsrjr5c.1
title: Masucci and Serrapica et al._HYDROPONIC BARLEY FORAGE VERSUS MAIZE SILAGE

description: This dataset contains the primary technical-economic data related to the production of hydroponic barley forage, maize silage, and other conventional forages (i.e. mixed grass and alfalfa) under the typical dairy buffalo farming conditions in southern Italy. The data were used to calculate the energy and water footprints and feed costs associated with a stepwise replacement of maize silage with hydroponic barley forage (no replacement, 50% replacement, and 100% replacement) in the dairy buffalo total mixed ration. For hydroponic forage, the lighting and irrigation parameters used during the indoor production cycle (Table S1), the main energy input and output flows (Table S5), and the direct and indirect production costs (Tables S6 and S7) are summarized. Similarly, for maize and other forage crops, the dry matter and energy outputs (Table S3), the physical flow of materials and their energy and cost equivalents (Table S4), the immobilized energy and the economic value of stationary equipment used in the silage and hay making process (Tables S6 and S7) are reported. Table S3 lists the calculation indices used in the evaluation of energy and water efficiency for feed and milk production. The data are supported by a list of references.
DOI: 10.17632/5rx5wt8ksh.1
title: Data from: Highway noise decreases the abundance of an understory rainforest bird

description: Data and R codes corresponding to the article:
Silva JN, Banhos A, Azevedo CS, Diniz P, Duca C. 2023. Highway noise decreases the abundance of an understory rainforest bird. Emu - Austral Ornithology. DOI: 10.1080/01584197.2023.2253837

The dataset comprises abundance estimates of the Rufous-capped Antithrush (Formicarius colma) in various transects extending from the forest edge (adjacent to pasture or highway) towards the interior of the forest. This research was carried out within the Sooretama Biological Reserve (SBR) located in southeastern Brazil.
DOI: 10.17632/2jznjhrpyd.2
title: Antitumoral Activity Data of the Synthetic Peptide Ctn-1 on Human Breast Cancer Cell Lines

description: All data related with the flow cytometry experiments.
DOI: 10.17632/2jznjhrpyd.3
title: Antitumoral Activity Data of the Synthetic Peptide Ctn-1 on Human Breast Cancer Cell Lines

description: All data related with the flow cytometry experiments.
DOI: 10.17632/2jznjhrpyd.4
title: Antitumoral Activity Data of the Synthetic Peptide Ctn-1 on Human Breast Cancer Cell Lines

description: All data related with the flow cytometry experiments.
DOI: 10.17632/2jznjhrpyd.1
title: Antitumoral Activity Data of the Synthetic Peptide Ctn-1 on Human Breast Cancer Cell Lines

description: All data related with the flow cytometry experiments.
DOI: 10.17632/vrst8rv245.2
title: CMAME_XDG_JumpsConditions_Henneaux

description: This folder contains the reference solutions used for the convergence study on the three test cases presented in the paper "High-order enforcement of jumps conditions between compressible viscous phases: an extended interior penalty discontinuous Galerkin method for sharp interface simulation", Henneaux et al. (2023).
DOI: 10.17632/y5v4m38nbb.1
title: Inhibition IRE1α protects against renal injury via blocking p38 MAPK pathway and M1 macrophage activation in renal fibrosis

description: The original data of western blot in “Inhibition IRE1α protects against renal injury via blocking p38 MAPK pathway and M1 macrophage activation in renal fibrosis” .
DOI: 10.17632/8ffvtrvj9n
title: Long-lived topography of the Oaxacan Complex (southern Mexico) after the assembly of Pangea: evidence from apatite fission-track dating

description: Data set used for QTQt modelling of the Peñoles River samples
DOI: 10.17632/8ffvtrvj9n.1
title: Long-lived topography of the Oaxacan Complex (southern Mexico) after the assembly of Pangea: evidence from apatite fission-track dating

description: Data set used for QTQt modelling of the Peñoles River samples
DOI: 10.17632/36fsyvm27m
title: LDHU3_12.0350

description: Cysteinyl-tRNA synthetase | CysRS; Leishmania donovani (HU3 strain)
DOI: 10.17632/36fsyvm27m.1
title: LDHU3_12.0350

description: Cysteinyl-tRNA synthetase | CysRS; Leishmania donovani (HU3 strain)
DOI: 10.17632/4gcjrdmcnh.1
title: LINF_360053700

description: Tetratricopeptide repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/226f8r9mpw.1
title: LINF_360054100

description: Amino acid transporter | AAT14; Leishmania infantum (strain JPCM5)
DOI: 10.17632/scp69bjss5
title: LDHU3_12.0320

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/scp69bjss5.1
title: LDHU3_12.0320

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/7hmfpvbct8.1
title: LDHU3_12.0300

description: Proteasome regulatory ATPase subunit 3; Leishmania donovani (HU3 strain)
DOI: 10.17632/7n5cvb7y2x.1
title: LDHU3_12.0250

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.fkxrrk
title: Occurrence Download

description: A dataset containing 3219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lernaeopodidae"
 ]
}

 The dataset includes 3219 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004358-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/j5j5dcp22b.1
title: LINF_360052100

description: HAT (Half-A-TPR) repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/972vtvnnx7.1
title: Data for designing discharge monitors in Surma River

description: Data (attached) focuses on a case study of designing and evaluating the discharge monitoring station of the Surma River using the entropy-based method. In the first phage, a 1-D model has been developed for the Surma River to extract the time series of discharge data. Afterward, two entropy contents (Joint entropy and total Correlation) were used to design and evaluate the optimal number and placement of the monitoring stations in the Surma River. Non-dominated sorting genetic algorithm II (NSGA-II by Dev et al., 2002) and Greedy algorithm (Alfonso et al., 2013; Banik et al., 2017a) have optimized the monitoring network.

1. MIKE-II model data: Data containing this folder had been used to build the 1-D hydrodynamic model. The model was built for two datasets (2015-2019 and 2021-2022)
2. Calibration data (.csv file )
3. Extracted time series discharge data (2015-2019 and 2021-22) for valuating the optimal number and placement of the monitoring stations in the Surma River (.csv file)
DOI: 10.17632/dbs9nps58j.1
title: A Simplified DOC Fractionation SPE Method Without Recovering Sorbed Compounds

description: This research aims to advance the understanding of dissolved organic carbon (DOC) fractions in water treatment processes. Current fractionation methods, such as Solid Phase Extraction (SPE), primarily focus on recovering sorbed compounds and assume that treatment impacts only the quantity, not the characteristics, of DOC fractions. Additionally, varying recovery rates and inconsistent fractionation pH definitions complicate cross-study comparisons of hydrophilic (HPI) and hydrophobic (HPO) DOC composition. This study addresses these gaps by investigating the impact of different pH approaches (pH 3, pH 7, and sequential adjustment) on DOC fractionation focused on organic compounds in the SPE filtrate, as well as the effects of coagulation, softening, and filtration on DOC composition and characteristics.
We introduced a novel fractionation method using Bond Elut ENV cartridges at two pH levels—pH 3 and pH 7—to estimate major DOC fractions: hydrophilic neutral (HPIN), total acidic (TA), and hydrophobic neutral (HPON). This approach eliminates the need to recover sorbed DOC fractions, simplifying the process and enabling more consistent cross-study comparisons. Applying this method in a conventional coagulation/softening plant revealed HPON decreased while the relative amounts of HPI and TA increased after the treatment. However, the treated water HPI exhibited significantly higher STHMFP and contained approximately twice the proportion of low-molecular-weight compounds than raw water HPI, highlighting significant changes in both the content and properties of DOC fractions after the treatment process. Our study indicates the contribution of HPI DOC fraction to SUVA and THM formation potential (THMFP) in treated water is greater than that of HPO DOC.
The data collected, including DOC concentrations, UV254 absorbance, THMFP, and molecular weight distribution using high-performance size exclusion chromatography (HPSEC) across different water samples and in SPE filtrates at various fractionation pH values and SPE types (Bond Elit C18, C18-EWP, and ENV). Also, we conducted a thorough literature review on DOC fractions isolated using bulk resin or SPE methods in drinking water applications. The data provides a comprehensive view of DOC behavior in conventional water treatment processes. This dataset can help practitioners design more efficient processes by considering changes in DOC composition throughout treatment. Researchers can apply these findings to understand better the influence of pH-based fractionation, DOC aromaticity, and the roles of specific DOC fractions in THM formation.
DOI: 10.17632/63p7ydsscr.1
title: LDHU3_12.0390

description: Ornithine decarboxylase (ODC); Leishmania donovani (HU3 strain)
DOI: 10.17632/t6t9ykfdwf.1
title: LDHU3_12.0380

description: SET18; Leishmania donovani (HU3 strain)
DOI: 10.17632/zkv7s2m7wn.1
title: LINF_360056500

description: Rsa4-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/yn9ydywcby.1
title: CFIN -Mouse Cradle Suspension System (MCSS)

description: CFIN Mouse Cradle Suspension System (MCSS) sorted by its major components, with stl and CAD files provided for each 3D printable element.
DOI: 10.17632/jjkb9j4vdk.1
title: Micronuclei induced by radiation, replication stress or chromosome segregation error do not active cGAS-STING Takaki et al

description: Raw Data
DOI: 10.17632/r726tw3drc.1
title: Exploring Consumer Food Values in Light of Japanese and Western Food Cultures: A Case Study in Shanghai (China)

description: data/code for the paper, Exploring Consumer Food Values in Light of Japanese and Western Food Cultures: A Case Study in Shanghai (China)
DOI: 10.17632/xp62zh6rxb.1
title: LINF_360055800

description: Alpha/Beta hydrolase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bhh6s3fn3d.1
title: Bifocal gamma-entrainment of the frontoparietal network enhances embodiment of an artificial hand

description: Datasets:
InfoSubjs.xlsx -&gt; Anonymized demographic data of the participants
MEP.csv -&gt; Motor Evoked Potential collected at T0, T1, T2
Proprioceptive Drift.csv -&gt; PD for each brush-stroking condition and participant
RHI_index.csv -&gt; RHI index for each brush-stroking condition and participant
sdSC.csv -&gt; standard deviation of the skin conductance for each brush-stroking condition and participant
DOI: 10.17632/6dscgdg2b5.1
title: Programmable Pulsatile Centrifugal Pump for Vascular Flow Simulation

description: The primary objective of this research was to design, implement, and validate a programmable open-source pulsatile flow system to cost-effectively simulate vascular flows. We employed an Arduino-compatible microcontroller combined with a motor driver to control a centrifugal direct current (DC) motor pump. The system was programmed to produce pulsatile flows with an arterial pulse waveform. Validation with Doppler ultrasound and flow measurements confirmed that our Arduino-based system successfully replicated arterial vascular flow. The materials are easily accessible, with a total bill of materials as low as $99. This open-source programmable pulsatile pump platform offers superior cost-effectiveness and adaptability relative to commercial offerings.
DOI: 10.17632/pzsvsgghkb.1
title: Supplementary Data

description: This is supplemental data for the manuscript "The hormonal profile in women using combined monophasic oral contraceptive pills is not as stable as previously thought: a temporal analysis of serum endogenous and exogenous hormones".
DOI: 10.17632/fvd24rb66m.1
title: Supplemental File: Transcriptome analysis of nutritional effects of different infant formulas and breast milk

description: Supplemental File: Transcriptome analysis of nutritional effects of different infant formulas and breast milk
DOI: 10.17632/m4ndry2dw3.2
title: River Plumes and Idealized Coastal Corners: ROMS and MATLAB files

description: This dataset is associated with a manuscript on river plumes and idealized coastal corners with first author Michael M. Whitney. The dataset includes source code, compilation files, and routines to generate input files for the Regional Ocean Modeling System (ROMS) runs used in this study. ROMS output files in NetCDF format are generated by executing the compiled ROMS code with the input files. The dataset also includes MATLAB routines and datafiles for the analysis of model results and generation of figures in the manuscript. The following zip files are included:

ROMS_v783_Yan_code.zip [ROMS source code branch used in this study]
coastalcorner_ROMS_compilation.zip [files to compile ROMS source code and run-specific Fortran-90 built code]
coastalcorner_ROMS_input_generate_MATLAB.zip [ROMS ASCII input file and MATLAB routines to generate ROMS NetCDF input files for runs]
coastalcorner_MATLAB_output_analysis.zip [MATLAB data files with selected ROMS output fields and custom analysis routines and datafiles in MATLAB formats used in this study]
coastalcorner_MATLAB_figures.zip [custom MATLAB routine for manuscript figure generation and MATLAB data files with all data fields included in figures]
coastalcorner_tif_figures.zip [TIF image files of each figure in manuscript]
DOI: 10.17632/5m34cs5zn4.2
title: Electrical resistivity imaging data for hydrological and geological investigations of virgin Rospuda river peatland (North-East Poland) - original data.

description: The data considers electrical resistivity imaging results for hydrological and geological investigations conducted in the reference Polish location. The repository is structured into a folder - ERI Rospuda Data, which contains raw data (presented in general array format; in "dat" files), inverted resistivity models images for each ERI proﬁle (presented in "jpg" files), and the location of the ERI profiles (KML format).
DOI: 10.17632/5m34cs5zn4.3
title: Electrical resistivity imaging data for hydrological and geological investigations of virgin Rospuda river peatland (North-East Poland) - original data.

description: The data considers electrical resistivity imaging results for hydrological and soil investigations conducted in the reference Polish location. The repository is structured into a folder - ERI Rospuda Data, which contains raw data (presented in general array format; in "dat" files), inverted resistivity models images for each ERI proﬁle (presented in "jpg" files), and the location of the ERI profiles (KML format).
DOI: 10.17632/5m34cs5zn4.4
title: Electrical resistivity imaging data for hydrological and soil investigations of virgin Rospuda river peatland (North-East Poland) - original data.

description: The data considers electrical resistivity imaging results for hydrological and soil investigations conducted in the reference Polish location. The repository is structured into a folder - ERI Rospuda Data, which contains raw data (presented in general array format; in "dat" files), inverted resistivity models images for each ERI proﬁle (presented in "jpg" files), and the location of the ERI profiles (KML format).
DOI: 10.17632/5m34cs5zn4.1
title: Electrical resistivity imaging data for hydrological and geological investigations of virgin Rospuda river peatland (North-East Poland).

description: The data considers electrical resistivity imaging results for hydrological and geological investigations conducted in the reference Polish location. The repository is structured into a folder - ERI Rospuda Data, which contains raw data (presented in general array format; in "dat" files), inverted resistivity models images for each ERI proﬁle (presented in "jpg" files), and the location of the ERI profiles (KML format).
DOI: 10.17632/4cx93gfb8z.1
title: WristSense: A Wrist-wear Dataset for Identifying Aggressive Tendencies

description: The WristSense dataset comprises sensor data collected from Huawei Fit 2 smartwatches worn by participants, including measurements of blood oxygen, sleep patterns, heart rate, physical activity, and stress levels, along with demographic information. This dataset, collected over a period of 3 months, holds significant potential for various applications in different domains. It can be utilized for:
1-Aggressive Behavior Prediction: Developing models to identify aggressive tendencies in individuals wearing wrist-wearables, aiding intervention in law enforcement, security, and workplace safety.
2- Artifact Identification: Assisting in identifying artifacts specific to Huawei wrist devices, enhancing digital forensic investigations, and reducing the risk of overlooking important evidence.
3- Crime Scene Reconstruction: Integrating data into 3D modeling for accurate crime scene reconstruction, supporting investigations of serious crimes within the law enforcement process.
4-Criminal Profiling: Analyzing behavior patterns to build comprehensive profiles in digital forensics investigations, providing insights into individuals' activities and involvement in criminal cases.
5- Healthcare and Wellness: Studying sleep patterns, heart rate, and stress levels to gain insights into individuals' health and well-being, assisting in personalized healthcare and wellness programs.
6-Human Behavior Research: Exploring the relationship between physical activity, stress levels, and demographic factors to understand human behavior patterns and inform social sciences research.
7-Wearable Technology Development: Utilizing the dataset to improve the design and functionality of wrist-wearable devices, enhancing user experience and health monitoring capabilities.
8-The versatility of the WristSense dataset makes it valuable not only in digital forensics but also in various other domains where understanding human behavior and utilizing wearable technology are essential.
DOI: 10.17632/vd5vmgr8kg.1
title: Images of Pigs at Different Stages From a Group of Shandong Farms

description: (1)A set of images of pigs in different stages from Shandong, China. After,years of image acquisition, more than one images, videos and video frame extraction images of piglets (including piglets around 50 days old and 70-80 days old), fattening pigs, sows and male breeding pigs were collected.(2) The dataset contains 63 images for piglets around 50 days, 139 images for those between 70 and 80 days, 91 images for fattening pigs at 160 days and 26 images for sows.(3) The dataset contains 1 video for piglets at about 50 days, 3 videos for those at 70-80 days, 5 videos for fattening pigs at 160 days, 4 videos for sows, and 4 videos for male breeding pigs.(4) Pig dataset from pig farms in Shandong for visual feature-based classification.(5) The dataset of multi-class problem is called multi-class problem because it has visual features such as reducing the chance of overfitting, improving accuracy, and reducing the training time of the model.
DOI: 10.17632/vsf74x9ctz.2
title: Analysis of Tyre Tread for Metal Tracers - ICP-MS Tyre Data

description: Tyre metadata and ICP-MS analysis data for manuscript entitled Analysis of Tyre Tread for Metal Tracers with Applications in Environmental Monitoring. 
Tyre rubber tread was digested and analysed by ICP-MS for 25 elements. 19 were reliably detected. This data includes the metadata for the tyres sampled, including manufacturer, model, speed and load ratings etc. 
These data are presented partially anonymised so that individual analysis cannot be linked to a specific tyre. 
Blank cells indicated data below the limit of detection.
All data should be interpreted ± the expanded uncertainty calculated to be 12.6%, calculated using a coverage factor of 2, which gives a level of confidence of approximately 95%.
DOI: 10.17632/vsf74x9ctz.3
title: Analysis of Tyre Tread for Metal Tracers - ICP-MS Tyre Data

description: Tyre metadata and ICP-MS analysis data for manuscript entitled Multi-element analysis of tyre rubber for metal tracers
Tyre rubber tread was digested and analysed by ICP-MS for 25 elements. 19 were reliably detected. This data includes the metadata for the tyres sampled, including manufacturer, model, speed and load ratings etc and ICP-MS analysis data. 
These data are presented partially anonymised, so that individual analysis cannot be linked to a specific tyre. 
Blank cells indicated data below the limit of detection.
All data should be interpreted ± the expanded uncertainty calculated to be 12.6%, calculated using a coverage factor of 2, which gives a level of confidence of approximately 95%.