cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14067047.v2
title: Chronos: Gene Fitness Effect Inference from CRISPR

description: Dataset provided in support of "Chronos: a model of cell population dynamics in CRISPR knockout screens that improves inference of gene dependency" by Dempster et al. Includes the jupyter notebook Analysis.ipynb together with all files needed to generate the panels in that manuscript. Also includes MAGeCK-MLE, CRISPRCleanR, CERES, and Chronos inference of gene fitness effects for the genome-wide pan-cancer CRISPR knockout experiments Project Achilles (public 20Q2) and Project Score.<br><br>v2: Additional analysis and supporting information.<br><br>To conserve space and speed up data loading, large matrices are provided as hdf5 files where dim_0 stores row names, dim_1 stores column names, and data stores the matrix as a 2D array. UTF8 encoding was used. Python users can load the matrices as Pandas dataframes using read_hdf5 from the Chronos package at https://github.com/broadinstitute/chronos. <br><br>
DOI: 10.6084/m9.figshare.1603531.v3
title: cytokines

description: Demo data. Not real!
DOI: 10.6084/m9.figshare.21453867.v1
title: Audios_vowel_A_PD

description: <strong>Data Set Information:</strong> Data consist audios of the vowel /a/ recorded for people with Parkinson's disease (EP) and without Parkinson's disease (noEP). There are two folders, one for each type of audios (A_EP_Audios and A_noEP_Audios). The age and gender of each person were also recorded. For EP, the duration of the disease was also recorded. This information can be found in data_information.csv. <br> <strong>Attribute Information:</strong> People are in one of two classes: EP and noEP EP: person with Parkinson desease noEP: person without Parkinson desease Age: age in years Sex: F: female; M: male <br> <strong>Papers referenced to the dataset:</strong> 1- M. Giuliano, D. Adamec, M.I. Debas, “Construcción de una base de voz de personas con y sin enfermedad de Parkinson”, Revista Digital del Departamento de Ingeniería e Investigaciones Tecnológicas de la Universidad Nacional de La Matanza (REDDI), vol. 6-Nro.1, 2021. https://reddi.unlam.edu.ar/index.php/ReDDi/article/view/141/272 <br> 2- M. Giuliano, L. Fernandez S. Pérez. “Selección de Medidas de Disfonía para la Identificación de Enfermos de Parkinson”. Proceedings IEEE Congreso Bienal de Argentina (ARGENCON), 2020, pp. 1-8, doi: 10.1109/ARGENCON49523.2020.9505554 <br> <br> <br>
DOI: 10.6084/m9.figshare.28846943.v1
title: Supplementary Material for: Patient Adherence and the Serum Phosphate, Calcium, and Intact Parathyroid Hormone Control in Peritoneal Dialysis Patients: Effectiveness of Smart PD Care Program

description: Introduction: Patient adherence is important for long-term outcomes of peritoneal dialysis (PD). Artificial intelligence is a good tool to manage patients. However, limited data regarding on its impact on the patient adherence, and the effect of patient adherence on serum phosphate, calcium, and intact parathyroid hormone (iPTH) control in PD patients. 
Methods: This was a single-center, prospective cohort study included PD patients in Guangdong Provincial People's Hospital. Adult patients (age ≥ 18 years) who included in the smart PD care program from September 1, 2020 to April 31, 2023 were enrolled. Patient adherence was accessed using the patient reported daily PD prescription data and calculated as the total days with PD ultrafiltration reported divided by the total days of follow-up. Good adherence was defined as the reporting rate ≥ 80%. The primary outcome was serum phosphate, calcium, and iPTH values achieved the treatment targets at 12-month follow-up. Unadjusted and adjusted generalized estimating equations (GEE) were used to evaluate the association of patient adherence with the serum phosphorus, serum calcium, and iPTH control.
Results: A total of 267 patients were included in this study. The mean age of the whole cohort was 43.3 ± 12.8 years, 130 (48.7%) were females, and 52 (19.5%) had diabetes. Patient adherence improved after included in the smart PD care program and the overall patient adherence during 12 months follow-up was 77.1% ± 26.4%, 93.0% ± 7.4% and 50.9% ± 25.6% for the entire cohort, patient with good adherence and poor adherence, respectively. Compared to patients with poor adherence, those with good adherence were associated with a better serum calcium (adjusted OR, 3.76; 95% CI, 2.67-5.30; p&lt;0.001) and iPTH control (adjusted OR, 2.20; 95% CI, 1.56-3.11); p&lt;0.001), but not for serum phosphorus control (adjusted OR, 1.31; 95% CI, 0.89-1.91; p=0.17) after adjusted for potential confounders. Results were similar when assessing the relationship between patient adherence and the longitudinal changes of serum calcium, iPTH and phosphorus during follow-up.
Conclusions: Patients adherence improved after included in the smart PD care program. Good patient adherence was associated with better serum calcium and iPTH control, but not for phosphorus control in PD patients. Further studies should be done to evaluate the effect of the smart PD care program on long-term patient outcomes.
DOI: 10.6084/m9.figshare.7235000.v1
title: Dataset S. pneumoniae and S. aureus antibiotic resistance

description: Dataset S. pneumoniae and S. aureus antibiotic resistance
DOI: 10.5281/zenodo.15564825
title: Heavy metals in  seafloor sediments, DOORS Cruise 2 (leg-2), (MN249)

description: The dataset contains heave metals data in seafloor sediments of the Western Black Sea (Romanian and Bulgarian EEZ) collected during DOORS cruise 2 (leg2), (MN249), 2023.

Sampling was performed using Van Veen Grab, multicorer and gravity сorer from seafloor depths from 72 m to 1162 m.

For the purposes of intercalibration, laboratory analyses were performed using 3 methods: energy dispersive X-ray fluorescence spectrometry (ED-XRF), inductively coupled plasma mass spectrometry (ICP-MS) and atomic absorption spectrometry (AAS).
DOI: 10.5281/zenodo.15564826
title: Heavy metals in  seafloor sediments, DOORS Cruise 2 (leg-2), (MN249)

description: The dataset contains heave metals data in seafloor sediments of the Western Black Sea (Romanian and Bulgarian EEZ) collected during DOORS cruise 2 (leg2), (MN249), 2023.

Sampling was performed using Van Veen Grab, multicorer and gravity сorer from seafloor depths from 72 m to 1162 m.

For the purposes of intercalibration, laboratory analyses were performed using 3 methods: energy dispersive X-ray fluorescence spectrometry (ED-XRF), inductively coupled plasma mass spectrometry (ICP-MS) and atomic absorption spectrometry (AAS).
DOI: 10.6084/m9.figshare.12997001.v1
title: CTD & TurboMAP data in the SCS

description: CTD and TurboMAP data in the South China Sea from 2004 to 2020
DOI: 10.6084/m9.figshare.28367618.v1
title: Questionnaire Data.xlsx

description: The participants in this study were graphic design students from a university. Researchers organized the students to test the ChtAR APP prototype and complete a user engagement questionnaire. Finally, descriptive statistical analysis and multiple linear regression analysis of 112 valid questionnaires showed that the ChtAR design pattern significantly enhances user engagement.
DOI: 10.17632/hwzfm65gv8
title: Data for: Trace-element distributions in modern shallow marine ostracod shells and their implications as paleo-proxies.

description: This file contains the E/Ca ratios, stages and preservation of ostracods of Sinocytheridea impressa collected from Hong Kong waters.
DOI: 10.6084/m9.figshare.27220761.v1
title: Datasets

description: The datasets used in the paper "The Ninth Art, Tells the Story of Cultural China and the World: Cultural Interaction in Cross-Cultural Video Game Communication-Based on 'Genshin Impact' YouTube Comments"
DOI: 10.6084/m9.figshare.27964536.v3
title: Description of growth Rate and Root System Diversity in the Maize

description: Here we upload a multi-year dataset of phenotypic shoot and root traits collected from founders of the Maize Nested Association Mapping (NAM) panel, which was designed to maximize genetic diversity in maize while ensuring lines would flower in eastern North America. Here, we present a description of greenhouse experiments conducted by four cohorts of undergraduate research interns at the University of Hawaiʻi at Mānoa. The data represent 38 phenotypic variables for 24 genotypes with the number of plant replicates ranging from 3 to 20. The genotype B73 served as our experimental control to enable the collection of data over four years. Data are also available published on GitHub -https://github.com/kant0063/REEU---Data-Science-in-Agriculture-data-and-code/tree/main, and we hope that they will be useful for other educators.
DOI: 10.6084/m9.figshare.c.3636584_d8.v1
title: Additional file 8: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: lncRNAs correlated with protein-coding genes and functional pathways. List of lncRNAs significantly co-expressed with protein-coding genes and corresponding enriched functional pathways based on the subset of the co-expressed genes. (XLS 286 kb)
DOI: 10.17632/8xmfg3mzg3
title: 食品意愿数据1

description: The key findings revealed that ABC Model of Attitudes exerted the strongest direct effect on Behavioral Intention (β = 0.70, p&lt; 0.001), significantly surpassing the impacts of performance expectancy (β = 0.11) and social influence (β = 0.16). ABC Model of Attitudes indirectly influence performance expectancy (β = 0.87) and social influence (β = 0.83) through facilitating conditions.
DOI: 10.4121/21939995.v1
title: Training and validation datasets for training probabilistic machine learning models on NREL's 10-MW reference wind turbine

description: This repository consists of two databases- <strong>CASE-ONSHORE</strong> and <strong>CASE-OFFSHORE</strong>, generated using OpenFAST v2.4 on NREL's 10-MW reference wind turbine for training data-driven probabilistic load surrogate models. The data is to be used for mapping 10-minute average environmental conditions to the corresponding 10-minute load statistics such as load average, fatigue and range at various locations on the tower and blades. <br>
DOI: 10.6084/m9.figshare.28208729.v1
title: Pro-Kremlin and Anti-Kremlin Telegram Narratives Dataset during Russia-Ukraine Conflict

description: The dataset includes Telegram channels with both pro-Kremlin and anti-Kremlin communications, collected over a timeframe covering one year prior to and one year following the Russian invasion. It consists of 404 pro-Kremlin channels featuring 4,109,645 posts and 114 anti-Kremlin channels containing 1,117,768 posts, all provided in JSON format. <i>anti_kremlin_channel_list</i> and <i>pro_kremlin_channel_list</i> encompasses details such as the channel name, username, Telegram link, and corresponding annotations. <br><b>Important Note:</b> For proper attribution, researchers who use this dataset in their work are invited to cite the following papers that describe this dataset and an example analysis.<br><br>Bawa, A., Kursuncu, U., Achilov, D., Shalin, V. L., Agarwal, N., & Akbas, E. (2025). Telegram as a Battlefield: Kremlin-related Communications during the Russia-Ukraine Conflict. <i>arXiv preprint arXiv:2501.01884</i>.<br><br>Bawa, A., Kursuncu, U., Achilov, D., & Shalin, V. L. (2024). the adaptive strategies of anti-kremlin digital dissent in telegram during the Russian invasion of Ukraine. <i>arXiv preprint arXiv:2408.07135</i>.
DOI: 10.5281/zenodo.15564757
title: Microplastics in sediments, Eastern Black Sea, DOORS Cruise 3 (MN256)

description: The dataset contains data on the distribution and types of microplastics in the upper sediment layer (5 cm) of rivers-influenced shelf of the Eastern Black Sea (Georgian EEE) collected during Doors Cruise 3 (MN256), June 2024. Sediment sampling was performed using a Van Veen Grab and a multicorer. Microplastic particles were selected by density separation and verified using Raman spectroscopy. Particle number were calculated for a 200 g dry sample.
DOI: 10.5281/zenodo.15564758
title: Microplastics in sediments, Eastern Black Sea, DOORS Cruise 3 (MN256)

description: The dataset contains data on the distribution and types of microplastics in the upper sediment layer (5 cm) of rivers-influenced shelf of the Eastern Black Sea (Georgian EEE) collected during Doors Cruise 3 (MN256), June 2024. Sediment sampling was performed using a Van Veen Grab and a multicorer. Microplastic particles were selected by density separation and verified using Raman spectroscopy. Particle number were calculated for a 200 g dry sample.
DOI: 10.15468/dl.twh73s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pseudoyoungia simulatrix (Babc.) D.Maity & Maiti",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013414-250525065834625/datasets/export for details.
DOI: 10.17632/vx2r53sb38
title: Data for: On the occurrence of the traversodontid Massetognathus (Synapsida, Cynodontia) from the Late Triassic Santacruzodon Assemblage Zone (Santa Maria Supersequence, southern Brazil): taxonomic and biostratigraphic implications

description: Contains the matrix data (phylogenetic analysis) and supplementary files, with the valid species for the brazilian Triassic and extra image.
DOI: 10.25403/upresearchdata.28436366.v1
title: Three constructs among leaders in corporate South Africa

description: The study investigates the relationship between personality, emotional intelligence, and spiritual intelligence with six (6) physiological drivers, namely brain fitness, stress coping, nutrition, mindset, sleep, and exercise, which are all key parts of leadership excellence.Phase I, the quantitative phase, involved the administration of three (3) questionnaires, namely the Hogan Personality Inventory (HPI), the EQi2.0 (an emotional intelligence assessment tool), and the Neuro Agility Profile (NAP). A sequential explanatory mixed methods research design was used during the course of the study. Seventy participants volunteered to participate in the study. Phase II of the study, the qualitative phase, consisted of semi-structured, in-depth interviews in which six (6) participants partook. Quantitative data were analysed using IBM SPSS version 26©. Descriptive statistics were used to describe the sample and to report on the prevalence of personality, emotional intelligence, and spiritual intelligence.Qualitative data were thematically analysed using Braun and Clarke’s six-phase approach for thematic analysis. Six (6) themes were identified, namely, individual leadership attributes, interaction with others, personal intent to make an impact, line of sight between the leaders and society, organizational obligations, and finally, awareness of the macro context within which leadership occurs.
DOI: 10.6084/m9.figshare.1585159.v1
title: Gaussian Job Archive for C40H42N6O6Zn2 109088

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.23566059.v1
title: <b>Optimized </b><b>grazing management </b><b>enhances multiple ecosystem services by maintaining plant diversity and dominance in grasslands</b>

description:  The main goal of ecosystem management is to optimize the simultaneous delivery of multiple ecosystem services. However, it is always challenging to develop management practices which balance the trade-offs between production and environmental benefits. Here, we investigated whether and how an innovative grazing practice, which incorporates periods of planned rest and sustainable stocking density, can simultaneously improve multiple ecosystem services. We found that grazing with rest in the peak growing season, along with setting sustainable stocking rates, which considered climate fluctuation, increased ecosystem multifunctionality under a wide range of perspectives (e.g., local herders, conservationists, and decision-makers), in terms of improving cultural and provisioning services compared to grazing exclusion (government intervention), and regulating and supporting services compared to continuous grazing (conventional practice). In particular, the innovative grazing practice mitigated the trade-offs among the four ecosystem services. The improvements could be attributed to an increase in plant diversity and community dominance (especially dominant palatable forages), because plant diversity played critical roles in delivering cultural and provisioning services, and the dominance was fundamental to regulating and supporting services. Our study suggests that developing innovative management practices could enhance the provision of ecosystem services and mitigate their trade-offs and conflicts between different stakeholder groups.
DOI: 10.6084/m9.figshare.27101836.v1
title: Ratio Gross Domestic Product and Population by regions for the year 2023

description: Overview of population by regions with percentage distribution for the year 2023 and<br>overview of gross domestic product (GDP) by regions with percentage distribution for the year 2023 with percentage distribution average and range.
DOI: 10.6084/m9.figshare.7511999.v1
title: Survival time of direct dental restorations in adults

description: AbstractIntroductionThe presence of dental caries is the main reason for the placement and replacement of restorations. Maintaining restorations to a satisfactory clinical condition is a challenge, despite the evolution of materials and surgical operative techniques.ObjectiveTo investigate the survival time and technical-operatory characteristics of dental restorations among adults in Teresina-PI.Material and methodData collection was carried out from September 2009 to January 2010 at a non-profit dental service. Data were collected at the moment of restoration replacement. The sample consisted of 262 defective restorations in 139 individuals. Survival time was calculated using the placement date that was registered on the individual’s dental form. Kruskal-Wallis and Mann-Whitney tests were used to compare the survival time of the different types of restorations and the chi-square test was used to assess the association between qualitative variables, at a 5% significance level.ResultThe median survival time of the restorations was 2 years. The survival time for amalgam was higher than for composite and glass ionomer cement (p=0.004). The most replaced dental material was the composite (66.4%). The majority of the replaced restorations had been placed in anterior teeth, in proximal surfaces.ConclusionAmalgam restorations have a longer survival time than composite resin. Technical and operatory variables had no influence on the survival time of restorations. Dental restorations have a low survival time and this fact might be associated with the decion-making process that is adopted by the professionals.
DOI: 10.17632/f7ghg9rpnp
title: Chest X-ray Images

description: Some chest X-ray images downloaded from publicly available websites.
DOI: 10.5281/zenodo.15564673
title: Microplastics in sediments, Western Black Sea, DOORS Cruise 1 (MN240)

description: The dataset contains data on the distribution and types of microplastics in upper layer (5 cm) of seafloor sediments in the Western Black Sea (Romanian EEZ) collected during DOORS cruise 1 (MN240), May 2023. Sediment sampling was performed using a Van Veen Grab and a multicorer from seafloor depths ranging from 25 m to 1080 m. Microplastic particles were selected by density separation and verified using Raman spectroscopy. Particle number were calculated for a 200 g dry sample.
DOI: 10.5281/zenodo.15564674
title: Microplastics in sediments, Western Black Sea, DOORS Cruise 1 (MN240)

description: The dataset contains data on the distribution and types of microplastics in upper layer (5 cm) of seafloor sediments in the Western Black Sea (Romanian EEZ) collected during DOORS cruise 1 (MN240), May 2023. Sediment sampling was performed using a Van Veen Grab and a multicorer from seafloor depths ranging from 25 m to 1080 m. Microplastic particles were selected by density separation and verified using Raman spectroscopy. Particle number were calculated for a 200 g dry sample.
DOI: 10.6084/m9.figshare.23566230.v1
title: MD-ligand-receptor input trajectory results

description: To demonstrate the capabilities of MD-ligand-receptor pipeline we launched it on the system: human DNA topoisomerase I in complex with camptothecin venom (CPT) and in covalent complex with a 22-base-pair DNA duplex. The initial structure was downloaded from the Protein Data Bank (PDB ID: 1T8I). The biological system was chosen as the test case for MD-ligand-receptor, considering the pivotal role of CPT as a chemotherapeutic drug targeting human Topoisomerase I (hTop1p). Human Topoisomerase I is an essential enzyme involved in DNA relaxation, and its inhibition by CPT leads to DNA replication disruption and activation of apoptotic response in cancer cells during the S phase of the cell cycle. <br> In the compressed folder there are the ligand-receptor binding interactions results extracted with the MD-ligand-receptor software.
DOI: 10.6084/m9.figshare.25215956.v2
title: Knoxville TN Georeferenced 1917 Sanborn Maps

description: This is a dataset of georeferenced 1917 Sanborn Fire Insurance maps of Knoxville TN, including individual sheets, a sheet index, a seamless mosaic, and a map key. Digital images of the data sheets were downloaded from the University of Tennessee Library https://digital.lib.utk.edu/collections/sanbornmapcollection. Multi-part sheets were clipped into pieces for georeferencing. Chris DeRolph georeferenced each sheet and piece, where possible. There were a few outlying images that were unable to be georeferenced due to lack of recognizable common features between the sheets and reference maps/imagery in the sheet vicinity. The sheet index shapefile includes a field with a hyperlink to the UTK library download page for the sheet. The seamless mosaic was created using the Mosaic to New Raster tool in ArcGIS Pro with all georeferenced sheets/pieces as inputs and the Minimum Mosaic Operator. No attempt was made prior to the mosaicking process to remove sheet numbers, scale bars, north arrows, overlapping labels/annotation, etc. Viewing individual sheets will provide the cleanest look at an area, while the seamless mosaic provides the most comprehensive view of the city at the time the maps were created.
DOI: 10.6084/m9.figshare.26776579.v1
title: Ishizuna et al. (2024) Structural changes in <i>Nelumbo</i> flower petals during opening and closing

description: The dataset for Figures of Ishizuna et al. (2024) Structural changes in <i>Nelumbo</i> flower petals during opening and closing.
DOI: 10.6084/m9.figshare.28868411.v1
title: Multi-Locus GWAS Uncover Key Loci Governing Transpiration Efficiency and Shoot Traits in Sorghum

description: High-quality DArT-Seq SNP markers dataset for the 284 F5 sorghum lines
DOI: 10.6084/m9.figshare.22217038.v6
title: Dataset: Investigating completeness and inequalities in OpenStreetMap - spatio-temporal analysis of global urban building data

description: Here we provide the data for reproducing the analysis and figures presented in the global urban OSM building completeness analysis manuscript.Update v2024: Included OSM completeness values for 2024 and updated covariates.
DOI: 10.6084/m9.figshare.4868435.v1
title: Sorghum bicolor - CRootBox parameter file

description: CRootbox parameter file for Sorghum bicolor.<br><br>from:<br><br>NA<br>