cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dq335ff/1
title: Kurkjian_2018_MMP_Methods

description: Zipped folder containing all raw data, processed data files, and code for analyses and figures for Kurkjian, H. M. 2018.  The Metapopulation Microcosm Plate: A modified 96-well plate for use in microbial metapopulation experiments.  Methods in Ecology and Evolution.
DOI: 10.5061/dryad.f301j26/1
title: Review of forest precipitation manipulation experiments

description: This table summarizes a literature review of 65 published precipitation manipulation experiments in forest and shrubland ecosystems.  This review was conducted as part of an article proposing guidelines for conducting such experiments.
DOI: 10.5061/dryad.g3t3cj8/1
title: Catch basin experiment data
DOI: 10.5061/dryad.g3t3cj8/2
title: Leaf mixture emergence bioassay data
DOI: 10.5061/dryad.g3t3cj8/3
title: Leaf mixture emergence bioassay bacterial OTU table
DOI: 10.5061/dryad.g3t3cj8/4
title: Oviposition cage bioassay data
DOI: 10.5061/dryad.gb9534p/1
title: Sullivan_EAP18-0555_WetlandFieldExperiment_2013

description: This dataset contains all response and predictor variables associated with the Wetland Field Experiment from the Sullivan et al. Ecological Applications publication to enable replication of the corresponding statistical analyses and Figs. 1, 3 and S7B,C.
DOI: 10.5061/dryad.gb9534p/2
title: Sullivan_EAP18-0555_UrbanStreamCategories_2010

description: This dataset contains all response and predictor variables associated with the Urban Stream Categories field study from the Sullivan et al. Ecological Applications publication to enable replication of the corresponding statistical analyses and Figs. 4, 5, and S4-6.
DOI: 10.5061/dryad.gb9534p/3
title: Sullivan_EAP18-0555_UrbanStreamGradient_2010-2011

description: This dataset contains all response and predictor variables associated with the Urban Stream Gradient field study from the Sullivan et al. Ecological Applications publication to enable replication of the corresponding statistical analyses and Figs. 2, S2 and S3.
DOI: 10.5061/dryad.h6qg003/1
title: Santangelo_et-al_JEB_2018_Dryad

description: The Zipped folder contains all data and scripts necessary to reproduce the results in the manuscript. The README is contained in the zipped folder. For additional reproducibility (e.g. raw data files, processing scripts, packrat R package repository), please visit the GitHub page for James Santangelo (linked in the README).
DOI: 10.5061/dryad.m35b890/1
title: Dialect response data (nestlings)

description: Comma-separated file with all nestling data used for the analyses in Hudson et al (2018). File contains number of chirps given during the 2 minute playback period, as well as the 1 minute pre-playback period, nestling ID, exposed feather length, and sex.
DOI: 10.5061/dryad.m35b890/2
title: Dialect Response Data (adults)

description: Comma-separated file with all adult response data used for the analyses in Hudson et al (2018). File contains the main response variable (mean distance for each trial), as well other behavioral measures and trial order number.
DOI: 10.5061/dryad.nj7r6d7/1
title: Master genotypes and crayfish plague data

description: Complete genotypes for all 9 populations of signal crayfish with their associated crayfish plague values (PFU and A level) and site coordinates
DOI: 10.5061/dryad.pj5952j/10
title: Supplementary Figure S2

description: FIG. S2. Extreme shapes from PC axes overlain to demonstrate geometry change in lateral (left), dorsal (middle) and posterior (right) views. A, PC1. Negative values are in green and positive values in red. B, PC2, the axis that shows ontogenetic shape change. Colour scheme follows figure 3, with negative values in dark blue and positive values in light blue. C, PC3. Colour scheme follows A.
DOI: 10.5061/dryad.pj5952j/7
title: BP/1/5241 right endosseous labyrinth

description: Surface file of the right labyrinth from BP/1/5241
DOI: 10.5061/dryad.pj5952j/8
title: SAM/PK/7904 left endosseous labyrinth

description: Surface file of the left labyrinth from SAM/PK/7904
DOI: 10.5061/dryad.pj5952j/9
title: Supplementary Figure S1

description: The landmarking method employed in this study. A, semilandmarks are placed along the exterior and interior margins of each semicircular canal, additionally capturing the geometries of the crus communis as well as the anterior and lateral ampullae. B, semilandmark sequences are resampled in R to 14 equally-spaced points along each margin.
DOI: 10.5061/dryad.r161gf4/1
title: Spectral and behavioral data

description: Average spectra for flowers in the study. Behavioral response data to interview bouquets.
DOI: 10.5061/dryad.r1f08nt/1
title: P_serotina_genotypes

description: Microsatellite genotypes for individuals examined in this study
DOI: 10.5061/dryad.r1f08nt/2
title: Prunus_serotina_locality

description: Locality data from herbarium sheets of individuals examined in this study
DOI: 10.5061/dryad.rs39j28/1
title: dielectric dsc raman xrd
DOI: 10.5061/dryad.t530ps6/1
title: Dolphin whistle characteristics and associated ambient noise levels

description: Characteristics of dolphin whistles recorded off Ocean City, Maryland, U.S.A., and the associated ambient noise levels in various frequency bands.
DOI: 10.5061/dryad.t732dt8/1
title: Dryad X-files data

description: Raw wing size, heat, desiccation and starvation resistance data.
DOI: 10.5061/dryad.vn6n74n/1
title: Reconstructed micro-CT scan data

description: Micro-CT scan of a head of a female wasp from the genus Ariphron. Additional details in README file.
DOI: 10.5061/dryad.vn6n74n/3
title: Details for two micro-CT data files in package

description: Micro-CT scan details and specimen collection details.
DOI: 10.17632/5m75jrt2fd.1
title: Data for: QUANTITIATIVE ESTIMATES OF ORBITAL AND MILLENNIAL SCALE CLIMATIC VARIABILITY IN CENTRAL MEXICO DURING THE LAST 35,000 YEARS.

description: Diatom-based transfer functions for the Chalco B core, lake Chalco, Basin of Mexico. Data include the age model of the Chalco B core and the estimated anomalies (three point running means) for Total Dissolved Solids (TDS), Mean Annual Precipitation (MAP) and Mean Annual Temperatrue (MAT).
DOI: 10.17632/5rwywh67gj.1
title: Data for: Investigating Paleoseismicity Using Fault Scarp Morphology of the Dushanzi Reverse Fault in the Northern Tian Shan, China
DOI: 10.17632/fkf2ygwrbs.1
title: Data for: Design, synthesis, structural characterization and in vitro evaluation of new 1,4-disubstituted-1,2,3-triazole derivatives against glioblastoma cells

description: Full NMR characterization and single crystal for selected compounds
DOI: 10.5061/dryad.1553pc3/1
title: Lizard heat tolerance (Iberian Peninsula) / CTmax

description: Critical Thermal Maxima (CTmax) of 304 adult males belonging to 59 populations and 15 lizard species from the Iberian Peninsula
DOI: 10.5061/dryad.1k5s048/1
title: Low copy number gene loci assembled for the project

description: A tarball (tar.gz) file containing the readme, along with individual assemblies of 5 low copy number gene regions for the following species: 
Miscanthidium_junceum           Sarga_versicolor
Miscanthus_sacchariflorus       Sorghum_propinquum
Miscanthus_sinensis_Andante     Andropogon_virginicus
Miscanthus_transmorrisonensis   Tripidium_arundinaceum-2
Miscanthus_x_giganteus          Sorghum_bicolor-BTx623
Saccharum_hybrid_LCP85-384      Sorghum_arundinaceum
Saccharum_hybrid-SP80-3280      Tripidium_procerum
Saccharum_spontaneum            Tripidium_rufipilum
Sarga_timorense                 Coix_lacryma-jobi (ep2-ex7 and ep2-ex8 only)
The assemblies can be found in individual multi-fasta corresponding to the gene name and exon of the region assembled:

apo1
d8
ep2-ex7
ep2-ex8
rep1
DOI: 10.5061/dryad.1k5s048/2
title: Alignment of low copy number gene loci employed in this study

description: Concatenated alignment for the five low copy number gene regions employed in the study.

Alignment file is:

low-copy-number-alignment.fas

as well as sequences derived from the paper of Estep et al:
Estep MC, McKain MR, Diaz DV, Zhong J, Hodge JG, Hodkinson TR, et al. Allopolyploidy, diversification, and the Miocene grassland expansion. Proc Natl Acad Sci USA. 2014; 111:15149-54

The Estep et al. datasets can be obtained from the Dryad digital repository:
http://datadryad.org/resource/doi:10.5061/dryad.5kf38

The following data partitions were employed
apo1.fsa
d8.fsa
ep2-ex7.fsa
ep2-ex8.fsa
rep1.fsa

In addition to data from the Estep et al. publication, the Sorghum laxiflorum dataset (lacking rep1) of et al:
Hawkins, J.S., Ramachandran, D., Henderson, A., Freeman, J., Carlise, M., Harris, A. and Willison-Headley, Z., 2015. Phylogenetic reconstruction using four low-copy nuclear loci strongly supports a polyphyletic origin of the genus Sorghum. Annals of botany, 116(2), pp.291-299.

was also emplogyed.

The alignment files include the following additional species data assembled from SRA datasets:

Miscanthidium junceum
Miscanthus_transmorrisonensis
Miscanthus_sacchariflorus
Miscanthus_x_giganteus
Saccharum_hybrid_LCP85-384
Saccharum_hybrid_SP80-3280
Saccharum_spontaneum_RB
Sarga_versicolor
Sarga_timorense
Sorghum_propinquum
Sorguhum_bicolor_BTx623
Sorghum_arundinaceum

Miscanths sinensis cv Andanta and Andropogon virginicus whole genome datasets as well as Tripidium arundinaceum 2, Tripidium procerum and Tripidium rufipilum datasets were sequenced for this study.

The alignment is partitioned as follows

locus   partition
apo1    1-674
d8      675-1816
ep2-ex7 1817-2818
ep2-ex8 2819-3640
rep1    3641-4426
DOI: 10.5061/dryad.3ss2t53/5
title: Pop assignment - adult genotypes

description: Genotype file for adults from lower Utsjoki and Akujoki used for population assignment in ONCOR.
DOI: 10.5061/dryad.3ss2t53/6
title: Pop assignment - baseline sample genotypes

description: Genotype file for adults sampled from baseline populations in Vaha et al. 2017 used for population assignment in ONCOR.
DOI: 10.5061/dryad.5hb0fb8/1
title: eDNA conc. and field data for each eDNA sampling

description: eDNA concentrations and visual inspection results together with other field data including pH, temperature, depth, velocity etc. for each threelips eDNA sampling along Chinai River, central Japan
DOI: 10.5061/dryad.610p0s4/1
title: Data from: Nonlinear response of ecosystem respiration to multiple levels of temperature increases

description: ER data includes the early growing season, late growing season and whole growing season in 2015-2016 growing season under different warming treatments.
DOI: 10.5061/dryad.67nf3vp/1
title: Procrustes coordinates (shape)

description: Set of 3 landmarks and 2 curves of 25 semilandmarks each capturing beak shape in the bird taxa used.
DOI: 10.5061/dryad.6pv18k3/15
title: Table2.15_min_summary_test_results

description: Results for Table 2
DOI: 10.5061/dryad.6pv18k3/16
title: Table3_Presence_absence

description: Results for Table 3
DOI: 10.5061/dryad.75mg6b1/1
title: NoiseLC

description: Matlab code for the simulation model. Output of simulations. R code to produce figures and analyses.
DOI: 10.5061/dryad.7dv1tg7/1
title: bag-experiment

description: Longevity data for flowers in the bagged -plant experiment (Fig 3b)
DOI: 10.5061/dryad.7dv1tg7/2
title: tagged-plants longevity

description: Longevity data for marked plants in the four plots.  Data also shows the number of inflorescences on each marked plant.  Spatial data included: x, y coordinates, and the total number of plants and number of diseased plants in that coordinate at the mid-point census.
DOI: 10.5061/dryad.7dv1tg7/3
title: spore-data on tagged flowers

description: Data file containing all flowers from tagged plants in the four local garelli plots where we were able to count the spores.  Note that there are some plants where the longevity is NA (becuase the flower was missed during one or more of the open/closed surveys).  We did the overall ANOVA analysis of spore deposition on the full data set (eg. Fig 3c) but restricted the ANCOVA analysis to just those samples where we had both longevity and spore data.  Other columns as in the longevity data set.
DOI: 10.5061/dryad.7dv1tg7/4
title: Phenology plot data

description: Phenology plot data (Figure 2).  Data file contains the total number of healthy hermaphrodites (HH), healthy female (MS), and diseased (D) plants and the total number of flowers of each type per 1m quad within four different local sites at four times (early, mid, and late).
DOI: 10.5061/dryad.7dv1tg7/5
title: ovule.data.dryad

description: Data on the number of ovules from field-collected hermaphrodite (HH) and female (MS) plants.
DOI: 10.5061/dryad.7dv1tg7/6
title: sex ratio across valley transects

description: Data file giving the elevation, population size, disease prevalence, and frequency of females for sampled populations across the broader maritime alps (Figure 5)
DOI: 10.5061/dryad.7dv1tg7/7
title: Flower size and number in greenhouse

description: Data file gives the number of inflorescences (inflos) and size in mm of the first flower (flower1) for plants from maternal half-sib families (fam) collected from either the upper or lower portion of our long-term transect one. The column 'Female' indicates sex: 1=female, 0=herm.
DOI: 10.5061/dryad.7dv1tg7/8
title: Flower size -field

description: R file with flower sizes in mm of samples hermaphrodite (hh) and female (ms) flowers near Rifugio Garelli
DOI: 10.5061/dryad.7dv1tg7/9
title: seed set greenhouse

description: File showing the number of capsules and total seeds produced from sympatric and allopatric crosses of Dianthus pavonius flowers from three populations grown in the greenhouse.
DOI: 10.5061/dryad.84q8c68/2
title: Pooled ddRADseq library_R1.7z

description: Raw sequencing data archived here represents raw Read1 and Read2 paired-end Illumina data from a single sequencing run.
Original R1 and R2 *.fastq files have been compressed using 7Zip (available at https://www.7-zip.org/download.html).
DOI: 10.5061/dryad.84q8c68/3
title: Pooled ddRADseq library_R2.7z

description: Raw sequencing data archived here represents raw Read1 and Read2 paired-end Illumina data from a single sequencing run.
Original R1 and R2 *.fastq files have been compressed using 7Zip (available at https://www.7-zip.org/download.html).
DOI: 10.5061/dryad.873b2j2/1
title: Genotype tables for the "Analysis of microsatellite loci in tree of heaven (Ailanthus altissima (Mill.) Swingle) using SSR-GBS"

description: Genotypes of 90 individuals of tree of heaven (Ailanthus altissima) at 19 microsatellite loci described in the cited study. Tissue was collected from three forest stands in Eastern Austria.
DOI: 10.5061/dryad.8988840/1
title: Booth_et_al_2018_MEPS_Data_and_Code

description: This file contains both the data files and code associated with each figure and analysis from this study (including supplemental information). Each folder within the file contains the data file(s) for each figure, and the .R file contains all the code used for analyses except that used for Figure 5 (a Matlab file, extension .m, stored with the data in the 'Fig.5' folder). The data and code for the supplemental information are stored together in the SI folder.
DOI: 10.5061/dryad.dr06p8f/1
title: EnvironmentalData_IntrogressionChubs

description: Environmental data from collection locales, including assignment probabilities (q).
DOI: 10.5061/dryad.dr06p8f/2
title: Sotola_IndChubFastq_A

description: Fastq files on individuals compressed into a .gz format. File 1.
DOI: 10.5061/dryad.dr06p8f/3
title: Sotola_IndChubFastq_B

description: Fastq files on individuals compressed into a .gz format. File 2.
DOI: 10.5061/dryad.dr06p8f/4
title: Sotola_IndChubFastq_C

description: Fastq files on individuals compressed into a .gz format. File 3.
DOI: 10.5061/dryad.ft80s9n/1
title: all consolidated data for Dryad

description: See sheet labeled 'Readme'
DOI: 10.5061/dryad.hk07677/1
title: Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based study - Supplemental data

description: This file contains the supplemental data to the article entitled "Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based study". It contains additional methods paragraphs 1 to 4, supplemental tables 1 to 17, supplemental figures 1 to 7, and additional references
DOI: 10.5061/dryad.jn44bq4/1
title: Code package for simulation (C++) and analysis (Matlab)

description: Please read the Readme file
DOI: 10.5061/dryad.k455v5c/1
title: SAJA analysis for publication
DOI: 10.5061/dryad.k455v5c/2
title: Halliday et al SAJA leaf data
DOI: 10.5061/dryad.k455v5c/3
title: Halliday et al SAJA prevalence data
DOI: 10.5061/dryad.kh550nq/1
title: DRYAD

description: Data on feather quality of Zonotrichia capensis
DOI: 10.5061/dryad.n0cg254/1
title: Supplementary Table e-1 Flow cytometry cell surface markers to phenotype cell types

description: Flow cytometry cell surface markers to phenotype cell types
DOI: 10.5061/dryad.n0cg254/2
title: Supplementary Table e-2 Multiparameter flow cytometry immunophenotyping panels

description: Multiparameter flow cytometry immunophenotyping panels
DOI: 10.5061/dryad.nf1r0f6/1
title: TESSARO_NONLOCAL_BACTERIA

description: SPSS datafile of the extracted raw spectral frequencies and computed bins that were used for subsequent analyses.
DOI: 10.5061/dryad.nn75v55/1
title: 12000sperms

description: Measurements of individual spermatozoa
DOI: 10.5061/dryad.nn75v55/2
title: 600samples

description: Main datafile containing mean sperm size per sample and all other data
DOI: 10.5061/dryad.pr4t978/1
title: Figure 2-9

description: Raw data for figure 2 through figure 9.
DOI: 10.5061/dryad.pr4t978/2
title: Figure 10 mouse 1

description: Raw data for mouse 1 in figure 10
DOI: 10.5061/dryad.pr4t978/3
title: Figure 10 mouse 2

description: Raw data for mouse 2 in figure 10
DOI: 10.5061/dryad.ps6b1c4/1
title: tone condition stimuli
DOI: 10.5061/dryad.ps6b1c4/2
title: natural speech condition stimuli
DOI: 10.5061/dryad.ps6b1c4/3
title: simulated speech stimuli
DOI: 10.5061/dryad.s87008d/1
title: BradfordetalSTARObsData

description: The data file is named ‘BradfordetalSTARObsData.csv’. A full description of the original purpose of these data, as well as the methods used to collect them, are described in the accepted manuscript. Data are organized across 30 columns, and 792 rows of data, with a single header row with the column title. The code file used to analyze these data is named ‘BradfordetalSTARCODE.txt’ and contains all R (the statistical freeware package) code used for data analysis in the accepted manuscript. Analytical steps are explained ahead of each section of code within the code file. Full description of the variables and their units for these field collected soils are in the associated readme.txt file
DOI: 10.5061/dryad.s87008d/2
title: BradfordetalSTARIncData

description: The data file is named ‘BradfordetalSTARIncData.csv’. A full description of the original purpose of these data, as well as the methods used to collect them, are described in the accepted manuscript. Data are organized across 31 columns, and 234 rows of data, with a single header row with the column title. The code file used to analyze these data is named ‘BradfordetalSTARCODE.txt’ and contains all R (the statistical freeware package) code used for data analysis in the accepted manuscript. Analytical steps are explained ahead of each section of code within the code file. Full description of the variables and their units for these field collected and then lab-incubated soils are in the associated readme.txt file
DOI: 10.5061/dryad.s87008d/3
title: BradfordetalSTARCODE

description: The code file used to analyze the two associated data sets is named ‘BradfordetalSTARCODE.txt’ and contains all R (the statistical freeware package) code used for data analysis in the accepted manuscript. Analytical steps are explained ahead of each section of code within the code file. Full data and description of the variables and their units for the field and lab-incubated soils are in the associated csv and associated readme.txt files
DOI: 10.5061/dryad.tp08m60/1
title: Supplementary Table 1

description: Supplementary Table 1 – this table lists the change scores for clinical outcome measures and strength tests over 1 year in mildly, moderately and severely affected ambulant patients and non-ambulant patients
DOI: 10.5061/dryad.v27k6d0/2
title: Matrix

description: Data supermatrix
DOI: 10.5061/dryad.v27k6d0/3
title: MRBAYESblock

description: MrBayes file used to perform the Bayesian Inference of Phylogeny.
DOI: 10.5061/dryad.v27k6d0/4
title: MRBAYEStree

description: Majority rule tree showing all compatible partitions.
DOI: 10.5061/dryad.v27k6d0/6
title: BEASTtree

description: Maximum clade credibility tree.
DOI: 10.5061/dryad.v27k6d0/7
title: Supplementary Information

description: Taxon list with sources, biogeographic assignations and tip dates, character list, Treepar and BioGeoBears results and supplementary figures and references.
DOI: 10.5061/dryad.vj72f.3
title: Data from: The tonic immobility test: do wild and captive Golden Mantella frogs (Mantella aurantiaca) have the same response?
DOI: 10.5061/dryad.vj72f.3/1.3
title: Mantella_TI

description: Data on TI responses from captive and wild golden mantella
DOI: 10.5061/dryad.vj72f.3/2.3
title: SVL_GoldenMantellas

description: Golden Mantellas' length measurements
DOI: 10.17632/5m75jrt2fd.2
title: Data for: QUANTITIATIVE ESTIMATES OF ORBITAL AND MILLENNIAL SCALE CLIMATIC VARIABILITY IN CENTRAL MEXICO DURING THE LAST 35,000 YEARS.

description: Diatom-based transfer functions for the Chalco B core, lake Chalco, Basin of Mexico. Data include the age model of the Chalco B core and the estimated anomalies (three point running means) for Total Dissolved Solids (TDS), Mean Annual Precipitation (MAP) and Mean Annual Temperatrue (MAT).
DOI: 10.17632/7gs8kr3szp.1
title: Data for: East–west contrast of Northeast Asian summer precipitation during the Holocene

description: Holocene evolution of the East Asian summer monsoon, including the EASM precipitation and circulation, simulated by the Kiel climate model (KCM).
DOI: 10.17632/scy6mr4vvk.1
title: Data for: Simulation of plasma dynamics in the Filippov's type plasma focus

description: Numerical simulation of the motion of the plasma current sheath (PCS) of the plasma-focus discharge, dynamics of pinching and subsequent pinch decay is carried out using various working gases in the PF-3 facility – the Filippov’s type plasma focus. For calculations, a one-component magnetohydrodynamic model was used taking into account the Hall-effect near the electrodes. On the basis of the simulation, the previously predicted key role of the Hall-effect in the phenomenon of PCS “runaway” along the anode has been confirmed. The simulation of PCS motion is in good agreement with the experimental results for the heavy gases (Ne, Ar) and the light ones (hydrogen and deuterium). The influence of the addition of heavy gas (Xe) to deuterium on the structure of the sheath and the dynamics of compression was simulated, previously observed in experiments.
DOI: 10.17632/vtpjk492xz.1
title: Data for: Cenozoic cooling history of the North Qilian Shan, northern Tibetan Plateau, and the initiation of the Haiyuan fault: Constraints from apatite- and zircon-fission track thermochronology

description: Apatite fission tracks data of samples from the restraining bend of the central segment of Haiyuan fault in north Tibet
DOI: 10.5061/dryad.1c9g5mm.3
title: Data from: Phylogenomic signatures of ancient introgression in a rogue lineage of darters (Teleostei: Percidae)
DOI: 10.5061/dryad.1c9g5mm.3/10.3
title: min10.phy

description: Concatenated phylip alignment for the dataset containing minimum 10 samples per locus. See "params_Darter_m10_RAxML.txt" for more information on assembly parameters.
DOI: 10.5061/dryad.1c9g5mm.3/5.3
title: min4.loci

description: Pyrad .loci file for the dataset containing minimum 4 samples per locus. See "params_Darter_m4_RAxML.txt" for more information on assembly parameters.