cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3506660
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Gibraltar deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506663.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Chalcopyrite and epidote content of the 0.25 0.5 mm and &gt;3.2 SG fraction of till from the region of the Highland Valley Copper deposit.
DOI: 10.6084/m9.figshare.3506660.v2
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Gibraltar deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506657
title: Clay fraction geochemistry (Cu) of till from the region of the Gibraltar deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506660.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Chalcopyrite and epidote content of the 0.25 0.5 mm and &gt;3.2 SG fraction of till from the region of the Gibraltar deposit.
DOI: 10.6084/m9.figshare.3506657.v2
title: Clay fraction geochemistry (Cu) of till from the region of the Gibraltar deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506657.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Clay fraction geochemistry (Cu) of till from the region of the Gibraltar deposit.
DOI: 10.6084/m9.figshare.3506654
title: Clay fraction geochemistry (Cu) of till from the region of the Highland Valley Copper deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506654.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Clay fraction geochemistry (Cu) of till from the region of the Highland Valley Copper deposit.
DOI: 10.6084/m9.figshare.3506654.v2
title: Clay fraction geochemistry (Cu) of till from the region of the Highland Valley Copper deposit. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506651
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Woodjam prospect. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506651.v2
title: Chalcopyrite and epidote content of the 0.25-0.5 mm and &gt;3.2 SG fraction of till from the region of the Woodjam prospect. Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Comparisons of pXRF analyses with ICP-AES, ICP-MS and IR analysis.
DOI: 10.6084/m9.figshare.3506438
title: Additional File 20. Maximum likelihood tree obtained in RAxML.

description: Additional File 20. Maximum likelihood tree obtained in RAxML
DOI: 10.6084/m9.figshare.3506651.v1
title: Till geochemistry and mineralogy: vectoring towards Cu porphyry deposits in British Columbia, Canada

description: Chalcopyrite and epidote content of the 0.25 0.5 mm and &gt;3.2 SG fraction of till from the region of the Woodjam prospect.
DOI: 10.6084/m9.figshare.3506438.v1
title: AF20.raxml.tree

description: Additional File 20. Maximum likelihood tree obtained in RAxML
DOI: 10.6084/m9.figshare.3506438.v3
title: Additional File 20. Maximum likelihood tree obtained in RAxML.

description: Additional File 20. Maximum likelihood tree obtained in RAxML
DOI: 10.6084/m9.figshare.3506438.v2
title: Additional File 20. Maximum likelihood tree obtained in RAxML

description: Additional File 20. Maximum likelihood tree obtained in RAxML
DOI: 10.6084/m9.figshare.3506435
title: Additional File 19. Bayesian tree obtained in MrBayes.

description: Additional File 19. Bayesian tree obtained in MrBayes
DOI: 10.6084/m9.figshare.3506435.v1
title: AF19.mrbayes.tree

description: Additional File 19. Bayesian tree obtained in MrBayes
DOI: 10.6084/m9.figshare.3506435.v3
title: Additional File 19. Bayesian tree obtained in MrBayes.

description: Additional File 19. Bayesian tree obtained in MrBayes
DOI: 10.6084/m9.figshare.3506435.v2
title: Additional File 19. Bayesian tree obtained in MrBayes

description: Additional File 19. Bayesian tree obtained in MrBayes
DOI: 10.6084/m9.figshare.3506396
title: Additional File 18. nad5 amino acid alignment of the terrestrial snails and the data from Garvin et al. [17].

description: Additional File 18. <i>nad5</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 474 in the molluscan alignment is homologous to position 540 in the vertebrate alignment. This corresponds to an isoleucine (I) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 527 because of several gap insertions.
DOI: 10.6084/m9.figshare.3506396.v2
title: Additional File 18. nad5 amino acid alignment of the terrestrial snails and the data from Garvin et al. [17].

description: Additional File 18. <i>nad5</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 474 in the molluscan alignment is homologous to position 540 in the vertebrate alignment. This corresponds to an isoleucine (I) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 527 because of several gap insertions.
DOI: 10.6084/m9.figshare.3506396.v1
title: AF18.nad5.terrestrial.Garvin2015.txt

description: Additional File 18. <i>nad5</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 474 in the molluscan alignment is homologous to position 540 in the vertebrate alignment. This corresponds to an isoleucine (I) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 527 because of several gap insertions.
DOI: 10.6084/m9.figshare.3506393
title: Additional File 17. cob amino acid alignment of the terrestrial snails and the data from Garvin et al. [17].

description: Additional File 17. <i>cob</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 151 in the molluscan alignment is homologous to position 158 in the vertebrate alignment. This corresponds to a phenylalanine (F) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 159 because of a gap insertion.
DOI: 10.6084/m9.figshare.3506393.v2
title: Additional File 17. cob amino acid alignment of the terrestrial snails and the data from Garvin et al. [17].

description: Additional File 17. <i>cob</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 151 in the molluscan alignment is homologous to position 158 in the vertebrate alignment. This corresponds to a phenylalanine (F) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 159 because of a gap insertion.
DOI: 10.6084/m9.figshare.3506393.v1
title: AF17.cob.terrestrial.Garvin2015.txt

description: Additional File 17. <i>cob</i> amino acid alignment of the terrestrial snails and the data from Garvin et al. [17]. Position 151 in the molluscan alignment is homologous to position 158 in the vertebrate alignment. This corresponds to a phenylalanine (F) in the first terrestrial sequence (<i>Aegista</i>). The final position in the merged alignment is 159 because of a gap insertion.
DOI: 10.6084/m9.figshare.3506390
title: Additional File 16. nad5 amino acid alignment from Garvin et al. [17].

description: Additional File 16. <i>nad5</i> amino acid alignment from Garvin et al. [17]. Position 540 corresponds to a Threonine (T) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506390.v2
title: Additional File 16. nad5 amino acid alignment from Garvin et al. [17].

description: Additional File 16. <i>nad5</i> amino acid alignment from Garvin et al. [17]. Position 540 corresponds to a Threonine (T) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506390.v1
title: AF16.Garvin2015.nad5.txt

description: Additional File 16. <i>nad5</i> amino acid alignment from Garvin et al. [17]. Position 540 corresponds to a Threonine (T) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506387
title: Additional File 15. cob amino acid alignment from Garvin et al. [17].

description: Additional File 15. <i>cob</i> amino acid alignment from Garvin et al. [17]. Position 158 corresponds to an Aspartate (D) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506387.v1
title: AF15.Garvin2015.cob.txt

description: Additional File 15. <i>cob</i> amino acid alignment from Garvin et al. [17]. Position 158 corresponds to an Aspartate (D) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506387.v2
title: Additional File 15. cob amino acid alignment from Garvin et al. [17].

description: Additional File 15. <i>cob</i> amino acid alignment from Garvin et al. [17]. Position 158 corresponds to an Aspartate (D) in the first sequence (<i>Anguilla</i>).
DOI: 10.6084/m9.figshare.3506384
title: Additional File 14. nad5 amino acid alignment of the molluscan mitogenomic dataset without the outgroup.

description: Additional File 14. <i>nad5</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 474 corresponds to a Serine (S) in the first sequence (a5: <i>Chromodoris</i>).
DOI: 10.6084/m9.figshare.3506384.v2
title: Additional File 14. nad5 amino acid alignment of the molluscan mitogenomic dataset without the outgroup.

description: Additional File 14. <i>nad5</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 474 corresponds to a Serine (S) in the first sequence (a5: <i>Chromodoris</i>).
DOI: 10.6084/m9.figshare.3506381
title: Additional File 13. cob amino acid alignment of the molluscan mitogenomic dataset without the outgroup.

description: Additional File 13. <i>cob</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 151 corresponds to a Proline (P) in the first sequence (a4: <i>Bulla</i>).
DOI: 10.6084/m9.figshare.3506384.v1
title: AF14.nad5.txt

description: Additional File 14. <i>nad5</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 474 corresponds to a Serine (S) in the first sequence (a5: <i>Chromodoris</i>).
DOI: 10.6084/m9.figshare.3506381.v2
title: Additional File 13. cob amino acid alignment of the molluscan mitogenomic dataset without the outgroup.

description: Additional File 13. <i>cob</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 151 corresponds to a Proline (P) in the first sequence (a4: <i>Bulla</i>).
DOI: 10.6084/m9.figshare.3506381.v1
title: AF13.cob.txt

description: Additional File 13. <i>cob</i> amino acid alignment of the molluscan mitogenomic dataset without the outgroup. Position 151 corresponds to a Proline (P) in the first sequence (a4: <i>Bulla</i>).
DOI: 10.6084/m9.figshare.3506378
title: Additional File 12. Partition information to run RAxML.

description: Additional File 12. Partition information to run RAxML.
DOI: 10.6084/m9.figshare.3506378.v2
title: Additional File 12. Partition information to run RAxML.

description: Additional File 12. Partition information to run RAxML.
DOI: 10.6084/m9.figshare.3506378.v1
title: AF12.txt

description: Additional File 12. Partition information to run RAxML.
DOI: 10.6084/m9.figshare.3506375
title: Additional File 11. Phylip file of the concatenated nucleotide dataset (1st and 2nd positions).

description: Additional File 11. Phylip file of the concatenated nucleotide dataset (first and second positions, 6474 nt.), used for tree reconstruction in RAxML.
DOI: 10.6084/m9.figshare.3506375.v1
title: AF11.txt

description: Additional File 11. Phylip file of the concatenated nucleotide dataset (first and second positions, 6474 nt.), used for tree reconstruction in RAxML.
DOI: 10.6084/m9.figshare.3506375.v3
title: Additional File 11. Phylip file of the concatenated nucleotide dataset (1st and 2nd positions).

description: Additional File 11. Phylip file of the concatenated nucleotide dataset (first and second positions, 6474 nt.), used for tree reconstruction in RAxML.
DOI: 10.6084/m9.figshare.3506375.v2
title: Additional File 11. Phylip file of the concatenated nucleotide dataset.

description: Additional File 11. Phylip file of the concatenated nucleotide dataset (first and second positions, 6474 nt.), used for tree reconstruction in RAxML.
DOI: 10.6084/m9.figshare.3506372
title: Additional File 10. Phylip file of the concatenated nucleotide dataset.

description: Additional File 10. Phylip file of the concatenated nucleotide dataset (9711 nt.)
DOI: 10.6084/m9.figshare.3506372.v1
title: AF10.txt

description: Additional File 10. Phylip file of the concatenated nucleotide dataset (9711 nt.)
DOI: 10.6084/m9.figshare.3506372.v2
title: Additional File 10. Phylip file of the concatenated nucleotide dataset.

description: Additional File 10. Phylip file of the concatenated nucleotide dataset (9711 nt.)
DOI: 10.6084/m9.figshare.3506369
title: Additional File 9. Nexus alignment with the information to run MrBayes.

description: Additional File 9. Nexus alignment with the information to run MrBayes.
DOI: 10.6084/m9.figshare.3506369.v2
title: Additional File 9. Nexus alignment with the information to run MrBayes.

description: Additional File 9. Nexus alignment with the information to run MrBayes.
DOI: 10.6084/m9.figshare.3506369.v1
title: AF9.txt

description: Additional File 9. Nexus alignment with the information to run MrBayes.
DOI: 10.6084/m9.figshare.3506366
title: Additional File 8. Sequence identifiers in the alignments, gene partitions for the concatenated dataset including or not the 3rd position.

description: Additional File 8. Sequence identifiers in the alignments, gene partitions for the concatenated dataset (9711 nt.) and for the concatenated dataset without the third position (6474 nt.).
DOI: 10.6084/m9.figshare.3506366.v1
title: AF8.xlsx

description: Additional File 8. Sequence identifiers in the alignments, gene partitions for the concatenated dataset (9711 nt.) and for the concatenated dataset without the third position (6474 nt.).
DOI: 10.6084/m9.figshare.3506363.v1
title: GRID release 2016-07-28

description: Institutes added from the following sources:Grant data from United StatesGrant data from NorwayGrant data from the UKMetadata:Increased URL coverage by 10%Increased GPS coordinate coverage by 10%Removed acronyms from GRID record names in records with multiple parent child relationships
DOI: 10.6084/m9.figshare.3506363.v2
title: GRID release 2016-07-28

description: Institutes added from the following sources:Grant data from United StatesGrant data from NorwayGrant data from the UKMetadata:Increased URL coverage by 10%Increased GPS coordinate coverage by 10%Removed acronyms from GRID record names in records with multiple parent child relationships
DOI: 10.6084/m9.figshare.3506327
title: Structural insight into GRIP1-PDZ6 in Alzheimer’s disease: study from protein expression data to molecular dynamics simulations

description: Protein–protein interaction domain, PDZ, plays a critical role in efficient synaptic transmission in brain. Dysfunction of synaptic transmission is thought to be the underlying basis of many neuropsychiatric and neurodegenerative disorders including Alzheimer’s disease (AD). In this study, Glutamate Receptor Interacting Protein1 (GRIP1) was identified as one of the most important differentially expressed, topologically significant proteins in the protein–protein interaction network. To date, very few studies have analyzed the detailed structural basis of PDZ-mediated protein interaction of GRIP1. In order to gain better understanding of structural and dynamic basis of these interactions, we employed molecular dynamics (MD) simulations of GRIP1-PDZ6 dimer bound with Liprin-alpha and GRIP1-PDZ6 dimer alone each with 100 ns simulations. The analyses of MD simulations of Liprin-alpha bound GRIP1-PDZ6 dimer show considerable conformational differences than that of peptide-free dimer in terms of SASA, hydrogen bonding patterns, and along principal component 1 (PC1). Our study also furnishes insight into the structural attunement of the PDZ6 domains of Liprin-alpha bound GRIP1 that is attributed by significant shift of the Liprin-alpha recognition helix in the simulated peptide-bound dimer compared to the crystal structure and simulated peptide-free dimer. It is evident that PDZ6 domains of peptide-bound dimer show differential movements along PC1 than that of peptide-free dimers. Thus, Liprin-alpha also serves an important role in conferring conformational changes along the dimeric interface of the peptide-bound dimer. Results reported here provide information that may lead to novel therapeutic approaches in AD.
DOI: 10.6084/m9.figshare.3506306
title: Petrogenesis of Early Cretaceous mafic dikes in southeastern Jiaolai basin, Jiaodong Peninsula, China

description: Mafic dikes of mainly Early Cretaceous age (130–110 Ma) are widely developed on the Jiaodong Peninsula, China. Previous studies of the dikes, which have focused mainly on occurrences in the Jiaobei uplift and in the Sulu orogenic belt, have thoroughly examined their petrogenesis and geodynamic setting. This study identified four previously unknown mafic dikes (dolerite and lamprophyre) in southeastern Jiaolai basin (near Haiyang city), Jiaodong Peninsula. Detailed geochemical and geochronological analyses were conducted to determine the petrogenesis of the dikes and to infer their geodynamic setting. Zircon U–Pb dating by laser ablation–inductively coupled plasma–mass spectrometry (LA-ICP-MS) indicates that the dikes were emplaced at ~126 Ma. The dikes are characterized by low SiO<sub>2</sub> contents (44.3–52.3 wt.%), high contents of MgO (7.28–10.13 wt.%), Cr (267–652 ppm), and Ni (93–335 ppm), and high Mg<sup>#</sup> values (63–73); they are enriched in large ion lithophile elements (LILEs; Ba, K, and Sr), depleted in high field strength elements (HFSEs; Nb, Ta, P, and Ti), and are characterized by high (<sup>87</sup>Sr/<sup>86</sup>Sr)<sub>i</sub> isotope ratios (0.707226–0.708222), low <i>ε</i><sub>Nd</sub>(<i>t</i>) values (−12.3 to −13.6), and zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values (−15.6 to −23.6). These features suggest that the dikes were derived from enriched subcontinent lithospheric mantle (SCLM). The wide range of Rb/Sr (0.04–0.18) and Ba/Rb (5–34) ratios, and the low and limited range of Dy/Yb (1.93–2.52) and K/Yb (5.71–11.99) ratios of the dikes indicate that the magmas originated from a low degree of partial melting of an amphibole- and phlogopite-bearing lherzolite in the spinel–garnet transition zone. The parental magma might have experienced fractionation of olivine and clinopyroxene during its ascent without significant crustal contamination. Evident depletion of Nb–Ta and Zr–Hf, low and limited range of Th/Yb ratios, elevated Ba/La ratios, constant chondritic Zr/Hf ratios, and a large range of Hf/Sm ratios further indicate that the mantle sources of the dikes were altered by carbonate-related metasomatism from subducted slab-derived fluids, which were most likely related to subduction of the Palaeo-Pacific plate during the Mesozoic. The mafic dikes in the southeastern Jiaolai basin resemble the arc-like mafic dikes in the Jiaobei terrain and the Sulu orogenic belt, and possibly indicate lithospheric thinning induced by slab rollback of the Palaeo-Pacific plate.
DOI: 10.6084/m9.figshare.3505913
title: RNA-mediated physics, chemistry, and molecular epigenetics

description: Olfaction and the innate immune system link energy as information from the epigenetic landscape to the physical landscape of supercoiled DNA. The sun's biological energy is the source of the information that links angstroms to ecosystems via physics, chemistry, and molecular epigenetics.<br>RNA-mediated protein folding chemistry and amino acid substitutions link the anti-entropic quantized energy of sunlight from the virucidal effects of ultraviolet (UV) light to healthy longevity via biophysically-constrained energy-dependent hydrogen-atom transfer in DNA base pairs in solution and cell type differentiation.<br>Biomarkers link energy-dependent differences in base pairs and amino acid substitutions to biosignatures across the healthy life span. RNA-mediated amino acid substitutions also reveal the increasing complexity of interactions among cell types as pathology progresses. For comparison, successful reproduction links energy from supercoiled DNA to protection of all organized genomes from virus-driven energy theft and pathology.<br>This model links the sun's biological energy from top-down causation in microbes to the most recent model of bottom-up gene activation and cell type differentiation in vertebrates. Citations to extant literature provide examples of what is currently known about how ecological variation leads to biophysically constrained cell type differentiation in the context of nutritional epigenetics and Precision Medicine, which clearly link metabolic networks and genetic networks to pharmacogenomics.
DOI: 10.6084/m9.figshare.3505913.v1
title: RNA-mediated physics, chemistry, and molecular epigenetics

description: Olfaction and the innate immune system link energy as information from the epigenetic landscape to the physical landscape of supercoiled DNA. The sun's biological energy is the source of the information that links angstroms to ecosystems via physics, chemistry, and molecular epigenetics.<br>RNA-mediated protein folding chemistry and amino acid substitutions link the anti-entropic quantized energy of sunlight from the virucidal effects of ultraviolet (UV) light to healthy longevity via biophysically-constrained energy-dependent hydrogen-atom transfer in DNA base pairs in solution and cell type differentiation.<br>Biomarkers link energy-dependent differences in base pairs and amino acid substitutions to biosignatures across the healthy life span. RNA-mediated amino acid substitutions also reveal the increasing complexity of interactions among cell types as pathology progresses. For comparison, successful reproduction links energy from supercoiled DNA to protection of all organized genomes from virus-driven energy theft and pathology.<br>This model links the sun's biological energy from top-down causation in microbes to the most recent model of bottom-up gene activation and cell type differentiation in vertebrates. Citations to extant literature provide examples of what is currently known about how ecological variation leads to biophysically constrained cell type differentiation in the context of nutritional epigenetics and Precision Medicine, which clearly link metabolic networks and genetic networks to pharmacogenomics.
DOI: 10.6084/m9.figshare.3505901
title: Normalized fitness values for amiE selections

description: Normalized fitness metrics, read counts, and raw log base 2 values for each variant assessed in amiE growth selections on acetamide, propionamide, and isobutyramide substrates. Replicates included. <br>