cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zxsjyjfzjd.1
title: ROMAS study: An intestinal microbiome intervention affects biochemical disease activity in patients with antiphospholipid syndrome

description: Aim of this study was to evaluate whether the gut microbiome affects disease activity in human APS. 15 APS patients with stable disease received oral vancomycin, 500mg four times daily for seven days.
Disease activity was assessed at four time points by measuring a panel of clinical phenotype-related biomarkers: antiphospholipid antibodies (APLAs), complement and inflammation markers and hemostatic parameters. The primary outcome was change from baseline in the composite of the biomarker panel determined by multi-level principal component analysis.
DOI: 10.17632/v3m5wd94yt.1
title: Raw data for the manuscript: "Enhancing plant growth in aquaponic systems via potassium manipulation in fish feeds: a pilot study of tailored feeds bridging nutritional gaps in aquaponics"

description: Raw data for the manuscript: "Enhancing plant growth in aquaponic systems via potassium manipulation in fish feeds: a pilot study of tailored feeds bridging nutritional gaps in aquaponics"
DOI: 10.17632/b5tct3xpp7.1
title: Santa Ana volcano seismicity

description: SeisComp and GrowClust seismicity catalogs
DOI: 10.17632/dm89zpxgnt.1
title: Codes for the article “Predicting your children's returns to schooling”.

description: These codes help to replicate all the empirical analysis in the article: “Predicting your children's returns to schooling”, Portuguese Economic Journal, revise and resubmit,

This research used the The Beginning School Study, 1982--2002 (Log# 01293) dataset (made accessible in 2004, numeric data files). These data were collected by Karl L. Alexander and Doris R. Entwisle and are available through the Henry A. Murray Research Archive of the Institute for Quantitative SocialScience at Harvard University, Cambridge, Massachusetts (Producer and Distributor).
DOI: 10.17632/69k277b76r.1
title: A. thaliana Col-0 juvenile leaf time-lapse images

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Cellular growth of Col-0 juvenile leaves (leaf1) was tracked using live imaging in a 24-hour time window (D, days after initiation). 
TdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/tvphv797m8.1
title: A. thaliana Col-0 adult leaf time-lapse images_Part I

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Cellular growth of Col-0 adult leaves (leaf8±1) was tracked using live imaging in a 24-hour time window (D, days after initiation). Three time-lapse experiments with five adult leaves analyzed are archived here. 
TdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/mhd99xr6sz.1
title: 2-hr time-lapse imaging of A. thaliana leaf primordia

description: Raw confocal stacks used for cell-cycle length measurement in the following study: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)

Cellular growth of leaf primordia (genetic backgrounds and leaf nodes indicated) was monitored through live imaging at a high temporal resolution (2-hour time window).
Plasma membranes (labeled with tdTomato fluorescence signals) were imaged using A Leica TCS SP8 Confocal Laser Scanning Microscope, and confocal images were channel-split and converted into .tif format stacks using FIJI. See the related publication for more details.
DOI: 10.17632/w9s9tp6jr5.1
title: Arabidopsis thaliana pRCO::SPL9r:Venus leaf1 time-lapse images

description: Raw confocal stacks used in the following Manuscript: 
TITLE: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification
JOURNAL: Current Biology 
Article Type: Report 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Yi Wang, Neha Bhatia, Daniel Kierzkowski, Rena Lymbouridou, Peter Huijser, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf1 development (D2-D6, D, days after initiation) was monitored in the SPL9 proximal supplementation (pRCO::SPL9r:Venus) line using live imaging with a one-day time interval. 
tdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.15468/dl.bxyzdz
title: Occurrence Download

description: A dataset containing 24312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-67.61493 -6.99947,-55.86645 -6.99947,-55.86645 0.0134,-67.61493 0.0134,-67.61493 -6.99947))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 24312 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004283-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/chbrn423m7.1
title: A. thaliana pSPL9::SPL9r:Venus leaf1 time-lapse images

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
The development of leaf1 in SPL9-overexpression plants (pSPL9::SPL9r:Venus) was tracked using live imaging (D, days after initiation) . 
TdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/z3jxvpndvf.1
title: A. thaliana cycd3;1-3 leaf8 time-lapse images

description: Raw confocal stacks used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf8 development in A.thaliana cycd3;1-3 triple mutant was tracked using live imaging with a 24-hour interval for 5-6 days (D, days after initiation). Four biological replicates are archived.
tdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/dd58zhphyk.1
title: Arabidopsis thaliana pCUC2::SPL9r:Venus leaf1 time-lapse images

description: Raw confocal stacks used in the following Manuscript: 
TITLE: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification
JOURNAL: Current Biology
Article Type: Report
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Yi Wang, Neha Bhatia, Daniel Kierzkowski, Rena Lymbouridou, Peter Huijser, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf1 development (D1-D7, D, days after initiation) was monitored in the SPL9 proximal supplementation (pCUC2::SPL9r:Venus) line using live imaging with a one-day time interval. 
tdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/cc22z4z8bk.1
title: A. thaliana pATML1::mTFP1:SPL9r leaf1 time-lapse images

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf1 development in SPL9 epidermal-expression plants (pATML1::mTFP1:SPL9r) was tracked daily for five days (D1-D5; D, days after initiation). 
mTFP1 signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/gcpptxtmy3.1
title: A. thaliana Col-0 adult leaf time-lapse images_Part II

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
The development of Col-0 adult leaves (leaf8) was live-imaged every 24 hours (D, days after initiation). In addition to part I (doi: 10.17632/tvphv797m8.1), here are another two biological samples.
TdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/xd8s497nsz.3
title: Data for: Structural Properties and Recrystallization Effects in Ion Beam Modified B20-type FeGe Films

description: Disordered iron germanium (FeGe) has recently garnered interest as a testbed for a variety of magnetic phenomena
as well as for use in magnetic memory and logic applications. This is partially owing to its ability to host skyrmions
and antiskyrmions — nanoscale whirlpools of magnetic moments that could serve as information carriers in spintronic devices. In particular, a tunable skyrmion-antiskyrmion system may be created through precise control of the defect landscape in B20-phase FeGe, motivating developing methods to systematically tune disorder in this material and understand the ensuing structural properties. To this end, we investigate a route for modifying magnetic properties in FeGe. Specifically, we irradiate epitaxial B20-phase FeGe films with 2.8 MeV Au4+ ions, which creates a dispersion of amorphized regions that may preferentially host antiskyrmions at densities controlled by the irradiation fluence. To further tune the disorder landscape, we conduct a systematic electron diffraction study with in-situ annealing, demonstrating the ability to recrystallize controllable fractions of the material at temperatures ranging from approximately 150◦ C to 250◦C. Finally, we describe the crystallization kinetics using the Johnson-Mehl-Avrami-Kolmogorov model, finding that the growth of crystalline grains is consistent with diffusion-controlled one-to-two dimensional growth with a decreasing nucleation rate.

This dataset includes all the raw data and the Python script used for data analysis and figure generation for the paper. This includes .csv files containing the data used in figures, microscopy images (.tif files), python code used for the analysis, and an Origin file (.opju) containing all figures and data spreadsheets, which can be opened using Origin Viewer, a free application that permits viewing and copying of data contained in Origin project files.
DOI: 10.17632/6jrnwm5nh8.1
title: Arabidopsis thaliana pLMI1::SPL9r:Venus leaf8 time-lapse images

description: Raw confocal stacks used in the following Manuscript: 
TITLE: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification
JOURNAL: Current Biology
Article Type: Report
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Yi Wang, Neha Bhatia, Daniel Kierzkowski, Rena Lymbouridou, Peter Huijser, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Leaf8 development (1-7 days after initiation, D1-D7) was monitored in the SPL9 distal augmentation (pLMI1::SPL9r:Venus, distal margin) line using live imaging with a one-day time interval. Four biological replicates are archived.
tdTomato signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/6ky97vgnm5.1
title: A.thaliana spl9spl15 leaf8 time-lapse images

description: Raw confocal data used in the following Manuscript: 
TITLE: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis
JOURNAL: Current Biology
Article Type: Research Article 
Authors: Xin-Min Li, Hannah Jenke, Sören Strauss, Christos Bazakos, Gabriella Mosca, Rena Lymbouridou, Daniel Kierzkowski, Ulla Neumann, Purva Naik, Peter Huijser, Stefan Laurent, Richard S. Smith, Adam Runions, Miltos Tsiantis*
*Corresponding Authors: Miltos Tsiantis (tsiantis@mpipz.mpg.de)
Atspl9spl15 adult leaves (leaf8) development was tracked using live imaging every 24 hours (D, days after initiation). 
YFP signals from the plasma membrane were captured by a Leica TCS SP8 Confocal Laser Scanning Microscope, and images were channel-split and converted into .tif format stacks using FIJI. For further information, please refer to the related publication.
DOI: 10.17632/wxrd9fh9xt.1
title: End product formation of glucose in the presence of organic acids by Thermoanaerobacter pseudethanolicus

description: Degradation of glucose in the presence of organic acids by Thermoanaerobacter pseudethanolicus. Data shows the effect of various environmental factors on the conversion of organic acids to their corresponding alcohols.
DOI: 10.17632/j8pngsv55w.1
title: LINF_260007400

description: Eukaryotic translation initiation factor 4E type 6 | eIF4E-6; Leishmania infantum (strain JPCM5)
DOI: 10.17632/5f676j23m6.2
title: Data for: B diffusion, related isotope fractionation and the structural role of B in pegmatitic melts

description: We performed an experimental diffusion study investigating the self- and chemical diffusion of B in a pegmatitic melt under high temperature and pressure. The effect of water on the diffusivity was assessed by conducting nominally dry and water-bearing (3.1–3.9 wt % H2O) experiments. The files contain the diffusion profile data obtained by electron microprobe (D1), femtosecond laser ablation sector field ICP-MS (D2) and femtosecond laser ablation multi collector ICP-MS (D3). D4 shows near infrared spectroscopy data for the calibration of linear molar absorption coefficients. D5 gives all data for solid-state nuclear magnetic resonance experiments.
DOI: 10.17632/whdkzkyzjk.1
title: LINF_260011900

description: Qc-SNARE protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/c67wgpww57.1
title: LINF_260010800

description: ApaG domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jdxzmnrmtj.1
title: A Forward-Looking Measure of Credit Risk (Estimation Results)

description: Estimation results for the manuscript "A Forward-Looking Measure of Credit Risk" (Masahiko Egami, Rusudan Kevkhishvili). Standard errors are indicated as s.e.
DOI: 10.17632/p8bjyrg5jh.1
title: Off-lattice hybrid kinetic Monte Carlo/molecular dynamics simulations on iron polyphosphate films from tricresyl phosphate molecules

description: This dataset contains data from our hybrid off-lattice kinetic Monte Carlo/molecular dynamics simulations on the thermal decomposition of (lubricant additive) tricresyl phosphate molecules on Fe (110). The dataset can be used to obtain growth rates, surface (e.g., Fractal Dimension, Root Mean Squared Roughness) as well as structural/chemical properties (Radial Distribution Function, Phosphate Chain Length, chemical composition) of thin films from TCP. The assumptions, limitations, and methods associated with the kMC/MD model of the present work are provided in our preprint titled "A hybrid off-lattice kinetic Monte Carlo/molecular dynamics method for amorphous thin film growth" (https://doi.org/10.26434/chemrxiv-2023-9fl0k-v2).
DOI: 10.17632/vy4s3kyc97.1
title: Neural representation of vocalization feedback in the bat auditory midbrain

description: Neural data analysis scripts: Firstly, BTN file of raw data to mat file. Then, data processing and analysis were performed in the order of the scripts (Step1 to Step 6, S1 to S6).
DOI: 10.17632/wh2rf7hk9h.1
title: LINF_260013600

description: FY-rich protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vrtx3w6mjd.1
title: Spatial datasets for benchmarking machine learning-based landslide susceptibility models

description: The spatial dataset consists of 743 landslide polygons, landslide centroid points, randomly non-landslide points, and 11 landslide-controlling factors. Landslide polygons were delineated through manual interpretation of high-resolution satellite imagery. The landslide-controlling factor data were extracted from topographic maps and Indonesia’s national digital elevation model (DEMNAS). The landslide-event dataset was mapped by comparing pre- and post-event (Tropical cyclone (TC) Cempaka, which occurred on 27–29 November 2017) high-resolution satellite imageries and conducting field surveys. The landslide polygons indicate areas with confirmed landslide occurrences, while the landslide-controlling factors data includes slope aspect, distance to river, distance to road, elevation, lithology, landuse, plan curvature, profile curvature, slope, stream power index, and terrain wetness index. The landslide polygons and points are stored in gpkg format, while the landslide controlling factors are stored in tif format. Files with xml and tfw extensions are text files used to store metadata and georeference of a tif raster file. All data can be opened using GIS software such as QGIS. The datasets can also be accessed and opened using R or Python using specified geospatial libraries such as SF and Terra.
DOI: 10.5281/zenodo.14694366
title: Flow characteristics in the confluence area of an ice-covered channel with 90° angle

description: This data deposit contains all the datasets needed to draw 9 Figures (2-6, 8-11) in the paper "Flow characteristics in the confluence area of an ice-covered channel with 90° angle", which is now under consideration for potential publication in Water Resources Research.
DOI: 10.17632/htycmw33zn.1
title: LINF_260012400

description: Regulator of chromosome condensation (RCC1) domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t4ry2bcsjc.1
title: LINF_260015300

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6m6bt5427c.1
title: Supplementary data for 'Compositional heterogeneity in 91500, GJ-1/89 and TEMORA-2 zircon reference materials'

description: Solution Q-ICP-MS data for GJ-1/89 zircon and long-term laser ablation Q-ICP-MS data for 91500, GJ-1/89 and TEMORA-2 zircon reference materials.
DOI: 10.17632/w8ktjcxknc.1
title: LINF_260017300

description: BRCT domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cgnnftcr3t.1
title: Masculinities and Sexual and Reproductive Health and Rights: A Global Research Priority Setting Exercise

description: •Systematic reviews of available research identify the need to accelerate research on masculinities and sexual and reproductive health and rights (SRHR) and especially gender-transformative approaches which seek to promote health and gender-equality simultaneously. 
•To build a research agenda that reflects diverse perspectives and shared ownership, systematic reviews should be complemented with consultation with wider stakeholders.
•This study establishes 26 research priorities on masculinities and SRHR, informed by systematic reviews of evidence and a collaborative and scientific process of engagement with diverse stakeholders.
DOI: 10.17632/d58vz7wfrf.1
title: Rapid structural remodeling of peripheral taste fibers is independent of taste cell turnover

description: Taste bud cells are constantly replaced in taste buds as old cells die and new cells migrate into the bud. The perception of taste relies on new taste bud cells integrating with existing neural circuitry, yet how these new cells connect with a taste ganglion neuron is unknown. Do taste ganglion neurons remodel to accommodate taste bud cell renewal? If so, how much of the structure of taste axons is fixed and how much remodels? Here we measured the motility and branching of individual taste arbors (the portion of the axon innervating taste buds) over time with two-photon in vivo microscopy. Terminal branches of taste arbors continuously and rapidly remodel within the taste bud. This remodeling is faster than predicted by taste bud cell renewal, with terminal branches added and lost concurrently. Surprisingly, blocking entry of new taste bud cells with chemotherapeutic agents revealed that remodeling of the terminal branches on taste arbors does not rely on the renewal of taste bud cells. Although terminal branch remodeling was fast and intrinsically controlled, no new arbors were added to taste buds, and few were lost over 100 days. Taste ganglion neurons maintain a stable number of arbors that are each capable of high-speed remodeling. We propose that terminal branch plasticity permits arbors to locate new taste bud cells, while stability of arbor number supports constancy in the degree of connectivity and function for each neuron over time.
DOI: 10.17632/rz49ytzyny.1
title: LDHU3_04.0880

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/wvj68dg558.1
title: LDHU3_04.0930

description: PDZ domain-containing protein; Leishmania donovani (HU3 strain)