cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/14010
title: Analysis of the performance of Deep Learning automatic phase pickers for earthquake data [Dataset]

description: Data and figures for the manuscript “Performance of Deep Learning pickers in routine network processing application”. The dataset includes: - phase arrival times of P and S waves for 3 test datasets obtained using different Deep Learning pickers - figures showing the results of the comparisons between Deep Learning pickers
DOI: 10.20350/digitalcsic/14004
title: Validating GIC modelling in the Spanish power grid by differential magnetometry [Dataset]

description: Plain text files with magnetic data (ASCII format) to monitor Geomagnetically Induced Currents (GIC) flowing in power transmission lines.
description: Data files with magetic data from Differential Magnetometry Method (DMM) sites to monitor Geomagnetically Induced Currents (GIC) flowing in power transmission lines. Four sites, two magnetometers per site (one under power line; another acting as reference), different dates.
DOI: 10.15468/dl.z4tpyg
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.15395 23.83366,-85.17312 22.47338,-84.81179 20.40107,-81.77242 19.14706,-80.39088 18.70072,-75.1375 19.07796,-73.88349 17.71768,-72.19363 17.88217,-71.20795 17.6218,-69.62714 17.99375,-68.99336 18.23989,-68.5422 17.99317,-67.85842 18.36678,-67.46367 18.1271,-67.1112 17.75349,-65.99742 17.89448,-65.58856 18.06366,-65.49692 18.54301,-66.21455 18.55916,-67.55353 18.67219,-68.79688 19.16344,-69.36638 19.54166,-70.48195 19.96907,-71.76877 20.156,-72.18611 19.91255,-73.01211 20.16904,-74.39922 20.80512,-77.91707 22.91185,-80.77905 23.54784,-83.15395 23.83366))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Barringtonia J.R.Forst. & G.Forst."
 ]
}

 The dataset includes 73 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004077-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/13999
title: [Dataset] Numerical models for the simulation of sedimentary geothermal systems and the potential for induced seismicity

description: This dataset comprises the input files for numerical simulation of 30-years cold water reinjection through a doublet for geothermal exploitation of a hot sedimentary aquifer (HSA) and the associated risk for reactivating distant faults. Numerical models explore the effect of fault permeability on the governing thermo-hydro-mechanical (THM) processes and the geomechanical response of the system. The models are 2D plane strain including a homogeneous and isotropic HSA laterally bounded by two opposite dipping normal faults. Following this brief explanation, the dataset has two folders, each containing data for a distinct model: - “THM_k=1e-19.gid” for simulating the geothermal system with the embedded faults having low permeability k=1·10-19 m2 - and - “THM_k=1e-16.gid” for simulating the geothermal system featured with high fault permeability k=1·10-16 m2. In each folder, there is a file with the name of the folder ended as “_gen.dat” which contains the input data of the model, including material properties, initial and boundary conditions and the time intervals. There is also a file ended as “_gri.dat” that includes the information on the mesh. The file “root.dat” includes the name of the model. To run the simulation, execute the Code_Bright executable “Cb_v9_3.exe” in a folder that contains the three input files and the executable.
description: This dataset comprises the input files for numerical simulation of 30-years cold water reinjection through a doublet for geothermal exploitation of a hot sedimentary aquifer (HSA) and the associated risk for reactivating distant faults. Numerical models explore the effect of fault permeability on the governing thermo-hydro-mechanical (THM) processes and the geomechanical response of the system. The models are 2D plane strain including a homogeneous and isotropic HSA laterally bounded by two opposite dipping normal faults. Following this brief explanation, the dataset has two folders, each containing data for a distinct model: - “THM_k=1e-19.gid” for simulating the geothermal system with the embedded faults having low permeability k=1·10-19 m2 - and - “THM_k=1e-16.gid” for simulating the geothermal system featured with high fault permeability k=1·10-16 m2. In each folder, there is a file with the name of the folder ended as “_gen.dat” which contains the input data of the model, including material properties, initial and boundary conditions and the time intervals. There is also a file ended as “_gri.dat” that includes the information on the mesh. The file “root.dat” includes the name of the model. To run the simulation, execute the Code_Bright executable “Cb_v9_3.exe” in a folder that contains the three input files and the executable.
DOI: 10.20350/digitalcsic/14000
title: EO4SIBS experimental SMOS Colored Detrital Matter (CDM) L4 (V.1.0) [Dataset]

description: Data acquisition: Satellite: ESA SMOS mission (Soil Moisture and Ocean Salinity). Filenames: BEC_CDM___SMOS__DAN_L4____YYYYMMDDT120000_0.05d_1d_EXP_v1.0.nc Documents: EO4SIBS_D6.8_D6.9
description: An Earth Observation Data Exploitation Platform for Science and Innovation in the Black Sea (EO4SIBS)'. To develop a new generation of algorithms that can ingest the wealth of spatial, temporal and spectral information provided by recent sensors providing high quality reference products for the blue and green ocean. Content: EO4SIBS experimental SMOS Colored Detrital Matter (CDM) L4 for the Danube mouth. Time coverage: 01 January, 2019 – 31 May, 2019; 01 December, 2019 – 31 December, 2019. Time resolution: Daily. Maps frequency generation: Daily. Spatial coverage: Latitude range: 44ºN-45.5ºN Longitude range: 28ºE-30.5ºE. Spatial resolution: 0.05 degrees. Spatial grid: WGS 84 / Regular longitude-latitude. YYYYMMDD: Day of the map. Sensor: Satellite SMOS / MIRAS. Format: NetCDF. Climate and Forecast (CF) conventions version: 1.6.
DOI: 10.20350/digitalcsic/13994
title: Vicarious calibration data for the CHIME project: Dataset of ground field spectroscopy measurements simultaneous with the flight of the AVIRIS-ng sensor at invariant target sites in Doñana National Park and Ríotinto mines (Huelva, Spain)

description: In the scope of the Copernicus Hyperspectral Imaging Mission (CHIME) support activity, absolute radiometric field measurements were carried out to cross-calibrate data response of the airborne AVIRIS-NG, spaceborne DESIS and PRISMA, and UAV hyperespectral sensors. Near-simultaneous field spectral data were collected at invariant targets in Doñana National Park and Ríotinto mining area (Huelva, Spain) on 25 June 2021. Sand dune surface and uniform benign residuals of treated mine waste were selected as invariant target sites, respectively. These dataset consists of the field spectral data. High spectral resolution field surface reflectance data were acquired using the Analytical Systems Devices (ASD) spectrometers measuring between the visible (VIS) to short wave infrared (SWIR) (400-2500 nm) ranges within ± 1 hour from the airborne data acquisition, which occurred at local noon. Collection methodology is described in Malthus, Ong et al. 2019. Inter-comparisons between these sensors are being examined as a precursor to raw materials and natural resources managements applications
DOI: 10.20350/digitalcsic/13990
title: Set de puzzles para el Taller "Manuscritos pieza a pieza"

description: Set de puzzles para el Taller "Manuscritos pieza a pieza" celebrado el 24 de septiembre de 2021 para La Noche Europea de los Investigdores. Reproduce 5 manuscritos diferentes, cada uno con 4 modelos de tamaños: 4, 6, 9 y 12 piezas.
DOI: 10.20350/digitalcsic/13988
title: Repository Evolution article 2021 Fernandez-Eslava, Alonso and Alonso-Alvarez
title: CODES in Evolution article 2021 Fernandez-Eslava, Alonso and Alonso-Alvarez

description: Dataset (excel book) containing the data used in the analyses of the accepted manuscript entitled: “An age-related decline in the expression of a red carotenoid-based ornament in wild birds”. The article will be published in Evolution.
description: Dataset of the scientific article "An age-related decline in the expression of a red carotenoid-based ornament in wild birds" publicado en Evolution (Online ISSN: 1558-5646)
DOI: 10.20350/digitalcsic/13989
title: Massive genome inversion drives coexistence of divergent morphs in common quails

description: Non filtered SNP data generated with genotyping-by-sequencing (GBS) for the article "Massive genome inversion drives coexistence of divergent morphs in common quails", Current Biology.
DOI: 10.20350/digitalcsic/13986
title: Data Breed_Wint OEC

description: Los datos corresponden a un estudio experimental sobre el efecto de la alimentacion artificial durante el invierno sobre el desempeño reproductivo en el carbonero comun. La evidencia actual es equívoca con efectos positivos y negativos en el tamaño y fecha de puesta, en poblaciones distintas de una misma especie. En nuestro studio analizamos la fecha y tamaño de puesta en una poblacion salvaje de carbonero comun en el sur de Suecia a lo largo de siete años, y manipulamos la disponibilidad de alimento invernal en la mitad de la población a lo largo de los ultimos cuatro. Vemos que los individuos expuestos a sobre-alimentacion invernal aumentaron el tamaño de puesta aunque no experimentanon ningun cambio en la fecha de puesta. Nuestros resutados muestran que existe una importante variacion interannual y en nuestra poblacion de estudio un efecto de "carry over" entre el invierno y la época de cría.
DOI: 10.20350/digitalcsic/13973
title: Data from: Using flower strips to promote green lacewings to control cabbage insect pests [Dataset]

description: The dataset reports: 1) Pest and predator presence in cabbage crops (section 2.2), 2) Arthropod collected in flower strips (section 2.3) and 3) Pollen-foraging preference assay and gut content analysis from Chrysopidae collected in the field (section 2.4).
description: The dataset contains six objects: 1) Visual sampling data (section 2.2), 2) Suction sampling data (section 2.3), 3) Pollen-foraging preference assay number and volume of pollen grains data (section 2.4) and 4) Number and volume of pollen grains data (section 2.4) from Chrysopidae collected in the field. In columns (=variables) and lines (=samples). Results were published in Journal of Pest Science [in press].
DOI: 10.20350/digitalcsic/13969
title: [Dataset] for “Accurate fluid flow modeling of fractured media using a continuum approach “

description: This dataset includes the input files of the numerical models used in this manuscript for simulating fractures as well as the executable file of the numerical code (CODE_BRIGHT). There are two main folders pertinent to equivalency of fracture thickness and sensitivity analysis to rock matrix permeability. Each folder contains the input files of the numerical models in subfolders whose names represent a short description of the corresponding model. “Equivalency” folder contains the benchmark model (with real fracture aperture, i.e., 10 μm) and three models with upscaled apertures (1 cm, 10 cm, and 1 m) using equivalent properties to obtain the same result. “Sensitivity analysis” folder includes models with 1 cm upscaled aperture for rock matrix permeability ranging from 10-18 to 10-24 m2. In each folder, there is a file with the name of the folder ended as “_gen.dat” which contains the input data of the model, including material properties, initial and boundary conditions and the time intervals. There is also a file ended as “_gri.dat” that includes the information on the mesh. The file “root.dat” includes the name of the model. To run the simulation, copy and paste Code_Bright executable file, i.e., “Cb_v9_3.exe”, in a folder that contains the input files and execute it.
description: This dataset includes the input files of the numerical models used in this manuscript for simulating fractures as well as the executable file of the numerical code (CODE_BRIGHT).
DOI: 10.20350/digitalcsic/13965
title: OLEUM Project. Data of a harmonized SPME-GC-MS method for the analysis of selected volatile compounds in virgin olive oils [Dataset]

description: The data set consists of: - a numerical quantitative file saved both in .xlsx and .ods formats: “OLEUM_Dataset_SPME-GC-MS_xlsx.xlsx”, “OLEUM_Dataset_SPME-GC-MS_ods.ods”. - a README file: “OLEUM_Dataset SPME-GC-MS_README_rtf.rtf”.-- Content of the file OLEUM_Dataset_SPME-GC-MS_xlsx/ods: SPME-GC-MS: This sheet presents the repeatability and reproducibility values, expressed as relative standard deviation (RSD%), for three quantification methods (QM1, QM2 and QM3). The three quantification methods are described in Casadei et al., 2021 (Food Control, Vol. 123, 2021, 107823, p. 107823. doi: 10.1016/j.foodcont.2020.107823). Additionally, the concentrations (min and max) determined by the 5 labs for each of 15 samples are shown.
description: This data corresponds to an inter-laboratory study (5 labs) applying a harmonized SPME-GC-MS method to analyze volatile compounds on 15 samples. The data shows the min-max concentration and the repeatability and reproducibility results. This work is relevant to know the performance of this method to be applied as a supporting tool for sensory assessment of virgin olive oil. The data are presented for 18 volatile compound that were selected for their contribution to positive attributes (fruitiness) and sensory defect. This work was developed in the context of the project OLEUM “Advanced solutions for assuring authenticity and quality of olive oil at global scale”, funded by the European Commission within the Horizon 2020 Programme (2014–2020, GA no. 635690).
DOI: 10.57745/ghakfc
title: 20240821_META_S01_database_3GC-R_publication.xlsx

description: This is the database describing all studies containing data on third-generation cephalosporin resistance.
DOI: 10.57745/ncuqik
title: Data dictionary _ database 3GC-R-E.tab

description: This is the data dictionary of the database "
20240821_META_S01_database_3GC-R_publication.xlsx"
DOI: 10.57745/nou5ci
title: 20240821_META_S01_database_CRE_publication.xlsx

description: This is the database describing all studies containing data on carbapenem resistance.
DOI: 10.57745/7sxqrn
title: 20241009_META_S02_database_RF_publication.xlsx

description: This is the database describing all studies containing data on factors associated with third-generation cephalosporin resistance.
DOI: 10.57745/ivawxg
title: 20240821_META_S01_database_MRSA_publication.tab

description: This is the database describing all studies containing data on MRSA.
DOI: 10.57745/jmxaho
title: Data dictionary _ database RF.tab

description: This is the data dictionary of the database "20241009_META_S02_database_RF_publication.xlsx"
DOI: 10.57745/n3b11h
title: Data dictionary _ database CRE.tab

description: This is the data dictionary of the database "
20240821_META_S01_database_CRE_publication.xlsx "
DOI: 10.57745/zrcrzh
title: Data dictionary _ database MRSA.tab

description: This is the data dictionary of the database "20240821_META_S01_database_MRSA_publication.xlsx "
DOI: 10.57745/ozdy3l
title: README.txt

description: This README file contains a general description of the dataset.
DOI: 10.17894/ucph.ba46e42f-cd6f-4cc6-8a93-7bc8e06a9ba6
title: wenyi_data_GCB
DOI: 10.6084/m9.figshare.27193959
title: Questionnaire (KVIQ-kinesthetic, visual, and VAS) data

description: This dataset contains three questionnaire data. KVIQ kinesthetic, KVIQ visual, and VAS. The intervention group subjects (vXX) and the control group subjects (cXX) data are included in each file. KVIQ-kinesthetic is the five-point scale (1 = "No image"; 2 = "Blurred image"; 3 = "Moderately clear image"; 4 = "Clear image"; 5 = "Image as clear as seeing").KVIQ-visual is the five-point scale the same as kinesthetic (1 = "No sensation"; 2 = "Mildly intense"; 3 = "Moderately intense"; 4 = "Intense"; 5 = "As intense as executing the action").VAS is the 10 cm scale (0 = "I didn't do well at all"; 10: "I did most successfully").For more details, please access the paper.
DOI: 10.6084/m9.figshare.24560546
title: Identification of potential phytochemical for the inhibition of non-muscle invasive bladder cancer (NMIBC)

description: Non-muscle invasive bladder cancer (NMIBC) is one of the most common type of bladder cancer. Here, we have utilized an integrated transcriptomic-computational approach to identify alternate treatments to the NMIBC. In this study, we have performed the comprehensive comparative analysis between three groups of 36 patients with non-relapsed (NR), recurrence and progressive symptoms. Differentially expressed genes involved in the pathways associated with the NMIBC were identified. <i>In silico</i> protein–protein interaction (PPI) network was performed to create the network of the hub genes associated with NMIBC. Further, we compared NR individuals with two cohorts of patients with recurrent and progressive symptoms that lead to the identification of three major biomarkers CD34, FLT1 and WHSC1 genes. Concurrently, PPI also suggests that they are significant hub genes responsible for disease recurrence and progression. Furthermore, targeted genes WHSC-1 and FLT-1 were subjected to virtual screening for identification phytochemical inhibitors. Docking and molecular dynamics simulations concluded that the phytochemicals anonymously named ‘UNK’ and ‘6-hydroxycyanidin’ are suitable for the inhibition of the proteins causing the NMIBC. In the future, this study will help for strengthening the strategies development at the molecular level for the control of carcinomas at early as well as detection of active and binding site, receptor–ligand interaction and also make drug designing for the early treatment of the carcinomas. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.24560546.v1
title: Identification of potential phytochemical for the inhibition of non-muscle invasive bladder cancer (NMIBC)

description: Non-muscle invasive bladder cancer (NMIBC) is one of the most common type of bladder cancer. Here, we have utilized an integrated transcriptomic-computational approach to identify alternate treatments to the NMIBC. In this study, we have performed the comprehensive comparative analysis between three groups of 36 patients with non-relapsed (NR), recurrence and progressive symptoms. Differentially expressed genes involved in the pathways associated with the NMIBC were identified. <i>In silico</i> protein–protein interaction (PPI) network was performed to create the network of the hub genes associated with NMIBC. Further, we compared NR individuals with two cohorts of patients with recurrent and progressive symptoms that lead to the identification of three major biomarkers CD34, FLT1 and WHSC1 genes. Concurrently, PPI also suggests that they are significant hub genes responsible for disease recurrence and progression. Furthermore, targeted genes WHSC-1 and FLT-1 were subjected to virtual screening for identification phytochemical inhibitors. Docking and molecular dynamics simulations concluded that the phytochemicals anonymously named ‘UNK’ and ‘6-hydroxycyanidin’ are suitable for the inhibition of the proteins causing the NMIBC. In the future, this study will help for strengthening the strategies development at the molecular level for the control of carcinomas at early as well as detection of active and binding site, receptor–ligand interaction and also make drug designing for the early treatment of the carcinomas. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.24045690
title: Three-helix bundle and SH3-type barrels: autonomously stable structural motifs in small and large proteins

description: In this study, we investigated two variants of a three-helix bundle and SH3-type barrel, compact in space, present in small and large proteins of various living organisms. Using a neural graph network, proteins with three-helix bundle (<i>n</i> = 1377) and SH3-type barrels (<i>n</i> = 1914) spatial folds were selected. Molecular experiments were performed for small proteins with these folds, and motifs were studied autonomously outside the protein environment at 300, 340, and 370 K. A comparative analysis of the main parameters of the structures in the course of the experiment was performed, including gyration radius, area accessible to the solvent, number of hydrophobic and hydrogen bonds, and root-mean-square deviation of atomic positions (RMSD). We exhibited an autonomous stability of the studied folds outside the protein environment in an aquatic medium. We aimed to demonstrate the possibility of analyzing three-helix bundle and SH3-type barrels autonomously outside the protein globule, thereby reducing the computational time and increasing performance without significant loss of information. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.24045690.v1
title: Three-helix bundle and SH3-type barrels: autonomously stable structural motifs in small and large proteins

description: In this study, we investigated two variants of a three-helix bundle and SH3-type barrel, compact in space, present in small and large proteins of various living organisms. Using a neural graph network, proteins with three-helix bundle (<i>n</i> = 1377) and SH3-type barrels (<i>n</i> = 1914) spatial folds were selected. Molecular experiments were performed for small proteins with these folds, and motifs were studied autonomously outside the protein environment at 300, 340, and 370 K. A comparative analysis of the main parameters of the structures in the course of the experiment was performed, including gyration radius, area accessible to the solvent, number of hydrophobic and hydrogen bonds, and root-mean-square deviation of atomic positions (RMSD). We exhibited an autonomous stability of the studied folds outside the protein environment in an aquatic medium. We aimed to demonstrate the possibility of analyzing three-helix bundle and SH3-type barrels autonomously outside the protein globule, thereby reducing the computational time and increasing performance without significant loss of information. Communicated by Ramaswamy H. Sarma