cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1409398.v269
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1409398.v270
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396485
title: Sets A1, A2, and A3 of Color Images

description: This fileset contains sets A1, A2, and A3 of color images in acquisition devices optical resolutions, that were used in a research described in: R.Starosolski: <em>Reversible denoising and lifting based color component transformation for lossless image compression</em>, submitted. Images are stored in the PPM P6 format (color, binary, 8-bit component depth). A1 is a set of 3 images acquired from a 36mm high quality diapositive film using a Minolta Dimage 5400 film scanner, images stored in device’s optical resolution, image sizes from 7376x4832 to 7424x4864. These images after size reduction and conversion to grayscale where included in the mednat set (http://sun.aei.polsl.pl/~rstaros/mednat/index.html). A2 is a set of 17 images acquired using a general purpose Agfa e50 scanner from 36mm negatives, images stored in device’s optical resolution, image sizes from 1620x1128 to 1740x1164. A3 is a set of 116 images acquired using a Olympus Stylus XZ-2 consumer camera, image sizes 1992x1493. Since the camera detector uses a Bayer-pattern RGGB color filter array, we converted the grayscale Bayer-pattern image to a color image by taking for each group of RGGB subpixels the average of 2 green subpixels as the intensity of green pixel component and intensities of red and blue subpixels as intensities of red and blue pixel components, respectively. This way the image resolution is as close to the detector resolution as possible without interpolation (equal in case of red and blue components, lower for green components). For extracting Bayer-pattern image from RAW camera files dcraw version 9.24 was used (https://www.cybercom.net/~dcoffin/dcraw/).
DOI: 10.6084/m9.figshare.1409398.v271
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396478
title: C. tropicalis protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1409398.v272
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396477
title: C. sinica protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396478.v1
title: C. tropicalis protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396475
title: C. remanei protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline
DOI: 10.6084/m9.figshare.1409398.v273
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396476
title: C. japonica protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396474
title: C. brenneri protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396475.v2
title: C. remanei protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline
DOI: 10.6084/m9.figshare.1396473
title: C. briggsae protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396474.v1
title: C. brenneri protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396476.v1
title: C. japonica protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396473.v1
title: C. briggsae protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396475.v1
title: C. remanei protein coding annotations

description: Protein coding annotations from the MAKER2 pipeline
DOI: 10.6084/m9.figshare.1409398.v274
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396464
title: Insect Microbiome Storage Project

description: Demultiplexed and merged (paired-end) Illumina MiSeq reads. "seqs_filt_[1-6].fa" should be concatenated into a single file before further processing and analysis. The original fasta file was split to allow uploading under figshare's file size limit. The mapping file specifies sample IDs, barcode sequences, and metadata.
DOI: 10.6084/m9.figshare.1396471
title: Free Image Transformation Tools: colortransf and pgmtool

description: This fileset contains image transformation tools: colortransf v. 1.0 and pgmtool v. 0.72. C++ source codes of tools are included in this fileset, executables as well as other versions of tools may be downloaded from http://sun.aei.polsl.pl/~rstaros/imgtransf/index.html. This software is intended for research purposes only; it is provided "as is"; author makes no warranty of any kind, either express or implied, with respect to this software. This work was partially supported by POIG.02.03.01-24-099/13 grant: GeCONiI-Upper Silesian Center for Computational Science and Engineering. colortransf v. 1.0 is a tool for performing reversible color space transformations, including established standard transformations as well as new ones, described in: R.Starosolski: <em>New simple and efficient color space transformations for lossless image compression</em>, Journal of Visual Communication and Image Representation, 2014, Vol. 25(5), pp. 1056-63, http://dx.doi.org/10.1016/j.jvcir.2014.03.003. pgmtool v. 0.72 is a tool for simple grayscale PGM P5 or RAW image transformations and reporting of basic image properties. This software uses CRC32 routines by Gary S. Brown and ISAAC random number generator by Bob Jenkins.
DOI: 10.6084/m9.figshare.1396472
title: C. elegans protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1396471.v1
title: Free Image Transformation Tools: colortransf and pgmtool

description: This fileset contains image transformation tools: colortransf v. 1.0 and pgmtool v. 0.72. C++ source codes of tools are included in this fileset, executables as well as other versions of tools may be downloaded from http://sun.aei.polsl.pl/~rstaros/imgtransf/index.html. This software is intended for research purposes only; it is provided "as is"; author makes no warranty of any kind, either express or implied, with respect to this software. This work was partially supported by POIG.02.03.01-24-099/13 grant: GeCONiI-Upper Silesian Center for Computational Science and Engineering. colortransf v. 1.0 is a tool for performing reversible color space transformations, including established standard transformations as well as new ones, described in: R.Starosolski: <em>New simple and efficient color space transformations for lossless image compression</em>, Journal of Visual Communication and Image Representation, 2014, Vol. 25(5), pp. 1056-63, http://dx.doi.org/10.1016/j.jvcir.2014.03.003. pgmtool v. 0.72 is a tool for simple grayscale PGM P5 or RAW image transformations and reporting of basic image properties. This software uses CRC32 routines by Gary S. Brown and ISAAC random number generator by Bob Jenkins.
DOI: 10.6084/m9.figshare.1409398.v275
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396464.v1
title: Insect Microbiome Storage Project

description: Demultiplexed and merged (paired-end) Illumina MiSeq reads. "seqs_filt_[1-6].fa" should be concatenated into a single file before further processing and analysis. The original fasta file was split to allow uploading under figshare's file size limit. The mapping file specifies sample IDs, barcode sequences, and metadata.
DOI: 10.6084/m9.figshare.1396472.v1
title: C. elegans protein coding annotations

description: Protein coding gene annotations from the MAKER2 pipeline used to annotate the C. remanei genome
DOI: 10.6084/m9.figshare.1409398.v276
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation in the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins promoting anti-self-reactive cellular cytotoxicity in male gamete performance.