cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.miktfs
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Premnas biaculeatus (Bloch, 1790)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 407 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021090-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgzurk
title: Occurrence Download

description: A dataset containing 1310925 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Paleobiology Database"
 ]
}

 The dataset includes 1310925 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153007-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tefn8
title: Occurrence Download

description: A dataset containing 31701 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Wallis and Futuna"
 ]
}

 The dataset includes 31701 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021090-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzanf4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phlox latifolia Michx.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177249-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jebjgu
title: Occurrence Download

description: A dataset containing 788255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia Mill."
 ]
}

 The dataset includes 788255 records from 827 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153004-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.discnd
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Centruroides sculpturatus Ewing, 1928",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013832-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hd7rej
title: Occurrence Download

description: A dataset containing 1345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "TaxonKey is Dennstaedtia bipinnata (Cav.) Maxon",
 "TaxonKey is Dicksonia bipinnata Cav."
 ]
 }
 ]
}

 The dataset includes 1345 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234952-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcpq9z
title: Occurrence Download

description: A dataset containing 808 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blastocerus dichotomus (Illiger, 1815)"
 ]
}

 The dataset includes 808 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033541-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vft87x
title: Occurrence Download

description: A dataset containing 1547 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Diversité et distribution de quelques espèces de plantes médicinales au Bénin"
 ]
}

 The dataset includes 1547 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277571-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhqq3y
title: Occurrence Download

description: A dataset containing 90853 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Charadrius melodus Ord, 1824",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 90853 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013833-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv4yq3
title: Occurrence Download

description: A dataset containing 8873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spinus tristis (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 8873 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234944-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5rx93r05
title: MassIVE MSV000094895 - 2024-Mobley-collaborative-project_Fe
title: Proteus mirabilis WGLW4 were cultured, supernatant was extracted using HLB-SPE and 80% MeOH/water and metabolome was analyzed with QExactive HF. 150uL, Fe
DOI: 10.15468/dl.pf7rdy
title: Occurrence Download

description: A dataset containing 6162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachyramphus major (Cabanis, 1847)"
 ]
}

 The dataset includes 6162 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027082-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsaycd
title: Occurrence Download

description: A dataset containing 1704 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tantilla melanocephala (Linnaeus, 1758)"
 ]
}

 The dataset includes 1704 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012527-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etrcp3
title: Occurrence Download

description: A dataset containing 91253 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CUMV Fish Collection"
 ]
}

 The dataset includes 91253 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013834-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7f82x
title: Occurrence Download

description: A dataset containing 38394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bidens pilosa L."
 ]
}

 The dataset includes 38394 records from 626 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219565-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnmnwc
title: Occurrence Download

description: A dataset containing 1794 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "Country is Colombia",
 {
 "or" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is Xeno-canto - Bird sounds from around the world",
 "DatasetKey is Colección de Sonidos Ambientales del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-CSA)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "DatasetKey is Earth Guardians Weekly Feed",
 "DatasetKey is International Barcode of Life project (iBOL)",
 "DatasetKey is Pl@ntNet observations"
 ]
 },
 "Geometry POLYGON((-74.22707 11.02478,-74.2202 10.99182,-74.19823 10.98083,-74.1584 10.99869,-74.15394 11.02203,-74.14089 11.03714,-74.12098 11.06186,-74.10931 11.0804,-74.09145 11.13258,-74.07017 11.17035,-74.05643 11.1985,-74.04854 11.23627,-74.0554 11.27472,-74.10622 11.25687,-74.13746 11.26648,-74.14982 11.23764,-74.14742 11.20193,-74.15703 11.17996,-74.17488 11.14563,-74.19273 11.10718,-74.20509 11.05774,-74.22707 11.02478))",
 {
 "or" : [
 "MediaType is Image",
 "MediaType is Video",
 "MediaType is Audio"
 ]
 }
 ]
}

 The dataset includes 1794 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215364-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5v85q
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation"
 ]
 },
 "TaxonKey is Nananthidium Moure, 1947",
 "Year 1960-2021"
 ]
}

 The dataset includes 130 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266940-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skaenz
title: Occurrence Download

description: A dataset containing 281636 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico",
 "Country is Greenland"
 ]
 },
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Polypodiopsida",
 "TaxonKey is Lycopodiopsida",
 "TaxonKey is Equisetopsida",
 "TaxonKey is Psilotopsida",
 "TaxonKey is Marattiopsida"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 281636 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013834-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwh84m
title: Occurrence Download

description: A dataset containing 5849 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Tetracera L."
 ]
}

 The dataset includes 5849 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259087-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uka7a8
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra falcifolia C.B.Clarke"
 ]
}

 The dataset includes 26 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016769-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dc3sz
title: Occurrence Download

description: A dataset containing 1489402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Colombia",
 "Year 2018-2018"
 ]
}

 The dataset includes 1489402 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256849-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11397775
title: Feature selection on microbial profiles of CRC samples with chopin2 (powered by hdlib)

description: This Zenodo entry contains the result of the feature selection algorithm implemented through a backward variable elimination strategy in chopin2 (powered by hdlib) applied on MetaPhlAn3 microbial profiles of a public dataset of metagenomic stool samples collected from patients affected by the colorectal cancer (CRC) as well as from healthy individuals.

Microbial profiles have been extracted through the curatedMetagenomicData package for R under the IDs ThomasAM_2018a, ThomasAM_2018b, and ThomasAM_2019_a.

The feature selection algorithm is implemented as a backward variable elimination method, and it makes use of the vector-symbolic architecture described in Cumbo F 2020.

Deposited data is described below:



datasets.tar.gz: it contains the datasets used as input of chopin2 as the result of merging the three datasets with relative abundances mentioned above, also stratified by age and sex (with prefix RA). The same datasets have been also binarized (with prefix BIN);

hd-models.tar.gz: it contains the output of the feature selection performed with chopin2 (powered by hdlib) on the datasets with both relative abundance and binary profiles (RA and BIN);

ml-models.tar.gz: it contains the result of the feature selection produced with classical wrapper-based techniques (i.e., Random Forest, Decision Tree, Support Vector Machine, Logistic Regression, and Extreme Gradient Boosting) in addition to a Python 3.8 script to reproduce the results.


Please note that the datasets RA__ThomasAM__species.csv and BIN__ThomasAM__species.csv are also included into the datasets.tar.gz archive.
DOI: 10.15468/dl.6ed5m7
title: Occurrence Download

description: A dataset containing 37483 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Arachnology National Collection (MACNAr)"
 ]
}

 The dataset includes 37483 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013837-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6467875
title: Feature selection on microbial profiles of CRC samples with chopin2 (powered by hdlib)

description: This Zenodo entry contains the result of the feature selection algorithm implemented through a backward variable elimination strategy in chopin2 (powered by hdlib) applied on MetaPhlAn3 microbial profiles of a public dataset of metagenomic stool samples collected from patients affected by the colorectal cancer (CRC) as well as from healthy individuals.

Microbial profiles have been extracted through the curatedMetagenomicData package for R under the IDs ThomasAM_2018a, ThomasAM_2018b, and ThomasAM_2019_a.

The feature selection algorithm is implemented as a backward variable elimination method, and it makes use of the vector-symbolic architecture described in Cumbo F 2020.

Deposited data is described below:



datasets.tar.gz: it contains the datasets used as input of chopin2 as the result of merging the three datasets with relative abundances mentioned above, also stratified by age and sex (with prefix RA). The same datasets have been also binarized (with prefix BIN);

hd-models.tar.gz: it contains the output of the feature selection performed with chopin2 (powered by hdlib) on the datasets with both relative abundance and binary profiles (RA and BIN);

ml-models.tar.gz: it contains the result of the feature selection produced with classical wrapper-based techniques (i.e., Random Forest, Decision Tree, Support Vector Machine, Logistic Regression, and Extreme Gradient Boosting) in addition to a Python 3.8 script to reproduce the results.


Please note that the datasets RA__ThomasAM__species.csv and BIN__ThomasAM__species.csv are also included into the datasets.tar.gz archive.
DOI: 10.15468/dl.tjpj9d
title: Occurrence Download

description: A dataset containing 34699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "Geometry POLYGON((45.59972 35.40617,44.8966 34.39704,45.33605 33.15514,46.65441 32.11898,47.26965 30.99561,47.7091 29.47702,49.29113 28.78607,50.96105 27.31235,52.98254 26.05591,55.09191 25.89789,56.41027 26.21372,56.93761 25.26369,60.01379 24.46627,62.21105 24.46627,62.21105 25.73966,63.26574 26.29255,63.88097 27.15606,63.08996 27.85765,61.68371 27.70212,59.31066 28.09051,57.37707 28.6319,55.26769 29.0169,53.42199 29.5535,52.27941 29.7063,50.87316 31.22137,49.20324 32.93411,48.58801 33.66869,46.47863 33.3756,46.21496 34.39704,45.59972 35.40617))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 34699 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228972-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b83xmm
title: Occurrence Download

description: A dataset containing 69671 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana pneumonanthe L."
 ]
}

 The dataset includes 69671 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215350-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwdk4s
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festuca puccinellii Parl."
 ]
}

 The dataset includes 449 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003823-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d26j8
title: Occurrence Download

description: A dataset containing 26634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cingulata, Pilosa)",
 "HasCoordinate is true",
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 }
 ]
}

 The dataset includes 26634 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180807-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0atv0i
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "Year 2000-2004",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "TaxonKey is Catamenia inornata (Lafresnaye, 1847)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034209-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhqq3n
title: Occurrence Download

description: A dataset containing 24609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "DatasetKey is one of (Xeno-canto - Bird sounds from around the world, CBCGDF CCAfa Volunteer Observation Archive, EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, Tracking Red-necked stints (Calidris ruficollis) and Curlew sandpipers (Calidris ferruginea) along the East Asian-Australasian Flyway (EAAF), GalliForm: Galliformes occurrence records from the Indo-Malay and Palaearctic, 1800-2008)",
 "GadmGid is one of (CHN.27_1, CHN.27.1.10_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "Year 1000-2022"
 ]
}

 The dataset includes 24609 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003800-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qn8xbq
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Puebla",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147722-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxgqf7
title: Occurrence Download

description: A dataset containing 4642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phyllactinia Lév., 1851"
 ]
}

 The dataset includes 4642 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0421451-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fn3n92
title: Occurrence Download

description: A dataset containing 6499 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Herpsilochmus longirostris Pelzeln, 1868"
 ]
}

 The dataset includes 6499 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003812-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hk5cy
title: Occurrence Download

description: A dataset containing 3014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.2_1",
 "TaxonKey is Colubridae"
 ]
}

 The dataset includes 3014 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136670-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.