cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.numaev
title: Occurrence Download

description: A dataset containing 15489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-11.37727 50.32389,33.25921 50.84977,36.07088 66.36056,-12.15052 65.77564,-11.37727 50.32389))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coronella austriaca Laurenti, 1768"
 ]
}

 The dataset includes 15489 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065505-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.36441.17767
title: Lab‑Avilés — Presentación breve
DOI: 10.5061/dryad.fqz612jwn
title: Survey: Trainee attitudes towards scientific writing

description: During March–April 2021, we used an anonymous Qualtrics survey to ask
 academic trainees (i.e., graduate students and postdoctoral scholars,
 hereafter postdocs) currently working at American and Canadian
 Universities within environmental biology fields about their publication
 records, career goals, challenges to writing, planning and scheduling
 writing, writing tracking methods, laboratory group (i.e., peers and
 advisor) involvement in their writing process, participation in writing
 accountability groups, demographic information, and the effects of the
 COVID-19 pandemic on their feelings towards writing habits and
 productivity. We were approved for IRB exemption under 45CFR46.104 and no
 answers could be linked to individuals or geographic locations, thus the
 survey did not track any personal identifying information.
description: This data was collected through a Qualtrics survey. The data was
 downloaded as an Excel file and some columns were renamed, and some
 responses were coded for analysis purposes. See the "metadata"
 tab for detailed descriptions of all columns. Empty cells were filled with
 "NA".  Three variables were removed to comply
 with Dryad’s policies on human subjects data. The variables were
 "start": time the participant started the survey;
 "end": the time the participant finished the survey; and
 “recorded_data”: the date and time the participant submitted the survey in
 MM/DD/YYYY hh:mm.
DOI: 10.5061/dryad.18931zd24
title: Predation cues amplify the effects of parasites on the personality of a keystone grazer

description: 1. Parasites can alter species interactions either by modifying infected
 host behavior or by influencing behavioral responses in uninfected
 individuals. Salt marsh ecosystems are characterized by a predator-prey
 interaction between the keystone grazer, Littoraria irrorata, and its main
 predator, Callinectes sapidus, both integral players in mediating the
 productivity of these habitats. 2. Littoraria also acts as the first
 intermediate host for at least four species of digenetic trematode.
 Parasite infection has been shown to decrease grazing and climbing in
 populations of Littoraria, though effects on infected host response to
 predators has not been investigated. Moreover, how infection might
 increase or decrease among-individual variation in behavior (i.e., animal
 personality) is still unknown. Here we ask how trematode infection affects
 the expression of boldness in the antipredator responses of L. irrorata in
 both the absence and presence of a predator cue. 3. We find that
 individual boldness varies substantially, and repeatability tends to
 increase as the number of stressors increases, with infected individuals
 exposed to a predator cue showing the strongest expression of behavioral
 types. 4. Parasitism amplifies this effect, though the parasite itself
 does not appear to directly induce behavioral changes: infected snails
 show no evidence of decreased climbing or differences in refuge use as
 compared to their uninfected counterparts. Infection might therefore drive
 the expression of condition-dependent personality differences evident only
 under high-risk conditions. 5. Group infection status strongly influenced
 behavioral reaction norms: uninfected individuals grouped with an infected
 snail were more responsive to predation risk, exhibiting increased
 climbing behavior and spending less time in the water. Here parasites are
 influencing personality indirectly by inducing avoidance behaviors in
 healthy individuals, though only in high-risk environments. 6. The
 potential for exposure to parasites and predators fluctuates greatly
 across marsh ecosystems. Given the ecological importance of this
 predator-prey relationship, trematode infection can act as an important,
 though indirect, determinant of overall salt marsh community structure,
 health, and function.
DOI: 10.17632/p434djtd6t
title: Incentives to decarbonise EU trawl fleet
DOI: 10.17632/p434djtd6t.1
title: Incentives to decarbonise EU trawl fleet
DOI: 10.5061/dryad.4b8gthth7
title: Data from: Physiological response of mature red spruce trees to partial and complete sapwood severing

description:  Drought frequency and severity are projected to increase in many
 regions of the world, yet it remains unclear how mesic forest trees will
 respond to these novel climate conditions. Experimentally imposing drought
 in forests at the stand scale is logistically difficult, however,
 disturbing the hydraulic functioning of individual trees can induce severe
 water stress and may inform how large trees respond to future droughts. In
 this study, we manipulated water availability of red spruce (Picea rubens
 Sarg.) trees by partially or completely severing sapwood, and measured
 impacts on water relations and photosynthetic efficiency over four months.
 Trees with total sapwood severed (TOT) experienced a rapid 96.7% reduction
 in daily sap flow whereas trees with only partial sapwood severed (PAR;
 estimated 2 – 5% sapwood remaining) and no sapwood severed (CON; phloem
 girdled) experienced average reductions of 74.3% and 4.6%, respectively.
 Sapwood severing in TOT trees resulted in declining midday shoot water
 potential compared to PAR and CON trees, but TOT trees did not surpass the
 water potential indicative of 50% loss of conductivity until approximately
 12 weeks post treatment. At seven weeks post treatment, TOT trees had 6.8
 times lower midday stomatal conductance than PAR and CON trees.
 Furthermore, branch- and crown-wood water potentials reached extreme
 values (below measurement threshold of -7.7 MPa) in TOT trees by the time
 of tree harvest at 18 weeks but remained high and did not differ between
 PAR and CON trees. Our results indicate that with minimal intact sapwood,
 PAR trees still had sufficient hydraulic functioning to avoid water
 stress, while TOT trees had temporary resistance to water stress likely
 associated with declines in carbon sequestration and growth. These
 findings advance our understanding of how red spruce may physiologically
 respond to periods of water stress in future climates.
description: The data were collected in summer 2020 at the University of
 Maine. Details on data collection are included in the full publication.
 The data reported here are the processed data used to generate all the
 graphs and calculate statistics reported in the manuscript.
DOI: 10.15468/dl.a6pvpy
title: Occurrence Download

description: A dataset containing 125524 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (Brunei Darussalam, Cambodia, Indonesia, Lao People’s Democratic Republic, Malaysia, Myanmar, Philippines, Singapore, Thailand, Viet Nam, Timor-Leste)",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Arachnida [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 125524 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002748-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9w0vt4bkh
title: Duck nests in Great Salt Lake, Utah wetlands 2019, 2020, and 2021

description: Nesting data for ducks in the wetlands of Great Salt Lake, Utah. Nests
 were located at U.S. Fish and Wildlife Service's Bear River Migratory
 Bird Refuge and waterfowl management areas operated by the Utah Division
 of Natural Resources in 2019, 2020, and 2021.
description: Nests were located using a modified chain dragging method that
 allowed us to search the narrow sides of the dams which created the
 impoundments of the management areas. Nests were monitored throughout the
 nesting period and fate was determined by observing the egg shells and
 remains of the nests. Measurements of vegetation and nest traits occurred
 following the completion of nesting so as not to disturb the incubating
 hen. We measured the height and variation of the vegetation surface
 surrounding the nest by creating two transects that intersected
 perpendicular to each other at the nest site. The first transect ran
 parallel to the road for 20 m centered at the nest site. The second
 transect ran from the road to the water's edge of the dam passing
 through the nest site. At each meter of the two transects, we recorded the
 height of vegetation. We then calculated the average height (HeightsAve)
 and standard deviation of height (HeightsSD) of the vegetation patch
 surrounding the nest. We calculated the overhead concealment
 (Overhead_Concealment) by counting the corners of a checkerboard that were
 obscured from 1.5 m above the nest. Lateral concealment
 (Lateral_Concealment) was calculated by recording the proportion of a
 Robel pole that was obscured by vegetation at the nest site from 4 m away
 from each of the 4 cardinal directions and then calculating the averaged
 concealment. Additionally, we collected the distance from the nest to the
 edge of the road (Dist_From_Road), the distance from the center of the
 road to the water's edge (Width_of_Dike), and the height of the
 tallest vegetation within 1 m of the nest (Tall_Height).
DOI: 10.5061/dryad.x95x69ppd
title: Anna's hummingbird microsite foraging preferences experiments

description: Data attempts to address the question: Do Anna's hummingbirds
 (Calypte anna) preferentially forage in shady microsites during extreme
 heat events? Data includes 1) Behavioral observations of Anna's
 hummingbirds visiting artificial feeders with 30% sucrose solutions under
 a shaded canopy vs. a non-shaded identical structure during heat waves and
 2) Observations of hummingbird behavior during heat waves in an urban
 landscape, and 3) Pollen deposition data from pollen left at artificial
 stigmas attached to feeders from feeder trials.
DOI: 10.5061/dryad.2jm63xstg
title: Adaptation to distinct habitats is maintained by contrasting selection at different life stages in sunflower ecotypes

description: Conspecific populations living in adjacent but contrasting
 microenvironments represent excellent systems for studying natural
 selection. These systems are valuable because gene flow is expected to
 force genetic homogeneity except at loci experiencing divergent selection.
 A history of reciprocal transplant and common garden studies in such
 systems, and a growing number of genomic studies, have contributed to
 understanding how selection operates in natural populations. While
 selection can vary across different fitness components and life stages,
 few studies have investigated how this ultimately affects allele
 frequencies and the maintenance of divergence between populations. Here,
 we study two sunflower ecotypes in distinct, adjacent habitats by
 combining demographic models with genome-wide sequence data to estimate
 fitness and allele frequency change at multiple life stages. This
 framework allows us to estimate that only local ecotypes are likely to
 experience positive population growth (λ&gt;1) and that the
 maintenance of divergent adaptation appears to be mediated via habitat-
 and life-stage-specific selection. We identify genetic variation,
 significantly driven by loci in chromosomal inversions, associated with
 different life history strategies in neighbouring ecotypes that optimize
 different fitness components and may contribute to the maintenance of
 distinct ecotypes.
description: Full variant call format table for all filtered samples and SNPs
 as described in Goebl et al. 2022 (https://doi.org/10.1111/mec.16785). 
description: This VCF table is an input file for the R code used to conduct
 the analyses presented in Goebl et al. 2022 (https://doi.org/10.1111/mec.16785). The R code and other associated input files are located: https://github.com/aprilgoebl/GSD_CodeAndFiles
DOI: 10.5517/ccdc.csd.cc2p1s8t
title: CCDC 2474366: Experimental Crystal Structure Determination

description: Related Article: E. S. Vikulova, K. P. Cheremnykh, A. S. Sukhikh, I. Yu. Ilyin, A. A. Vinogradova, D. P. Pishchur, N. B. Morozova |2025|Russ.J.Coord.Chem.|51|936|doi:10.1134/S1070328425601049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5068/d11d5d
title: Data from: Dust settling from turbulent layers in the free troposphere: Implications for the Saharan Air Layer

description: Desert dust accounts for a substantial fraction of the total atmospheric
 aerosol loading. It produces important impacts on the Earth system due to
 its nutrient content and interactions with radiation and clouds. However,
 current climate models greatly underestimate its airborne lifetime and
 transport. For instance, super coarse Saharan dust particles (with
 diameters greater than $10\,\mathrm{\mu m}$) have repeatedly been detected
 in the Americas, but models fail to reproduce their transatlantic
 transport. In this study, we investigated the extent to which vertical
 turbulent mixing in the Saharan Air Layer (SAL) is capable of delaying
 particle deposition. We developed a theory based on the solution to a
 one-dimensional dust mass balance and validated our results using
 large-eddy simulation (LES) of a turbulent shear layer. We found that eddy
 motion can increase the lifetime of suspended particles by up to a factor
 of $2$ when compared with laminar flows. Moreover, we found that the
 increase in lifetime can be reliably estimated solely as a function of the
 particle Peclet number (the ratio of the mixing timescale to the settling
 timescale). By considering both the effects of turbulent mixing and dust
 asphericity, we explained to a large extent the presence of super coarse
 Saharan dust in the Caribbean observed during the SALTRACE field campaign.
 The theory for the lifetime of coarse particles in turbulent flows
 developed in this study is also expected to be applicable in other similar
 geophysical problems, such as phytoplankton sinking in the ocean mixed
 layer.
DOI: 10.5281/zenodo.18402527
title: hypsolebias_trilineatus_spades_01.fasta.gz
DOI: 10.5281/zenodo.18402528
title: hypsolebias_trilineatus_spades_01.fasta.gz
DOI: 10.5061/dryad.m37pvmd6b
title: Heel and cord blood datasets for Bangladesh and Zambia cohorts

description: Background: Accurate estimates of gestational age (GA) at birth are
 important for preterm birth surveillance but can be challenging to obtain
 in low-income countries. Our objective was to develop machine learning
 models to accurately estimate GA shortly after birth using clinical and
 metabolomic data. Methods: We derived three GA estimation models using
 ELASTIC NET multivariable linear regression using metabolomic markers from
 heel-prick blood samples and clinical data from a retrospective cohort of
 newborns from Ontario, Canada. We conducted internal model validation in
 an independent cohort of Ontario newborns, and external validation in heel
 prick and cord blood sample data collected from newborns from prospective
 birth cohorts in Lusaka, Zambia, and Matlab, Bangladesh. Model performance
 was measured by comparing model-derived estimates of GA to reference
 estimates from early pregnancy ultrasound. Results: Samples were collected
 from 311 newborns from Zambia and 1176 from Bangladesh. The
 best-performing model accurately estimated GA within about 6 days of
 ultrasound estimates in both cohorts when applied to heel prick data (MAE
 0.79 weeks (95% CI 0.69, 0.90) for Zambia; 0.81 weeks (0.75, 0.86) for
 Bangladesh), and within about 7 days when applied to cord blood data (1.02
 weeks (0.90, 1.15) for Zambia; 0.95 weeks (0.90, 0.99) for Bangladesh).
 Conclusions: Algorithms developed in Canada provided accurate estimates of
 GA when applied to external cohorts from Zambia and Bangladesh. Model
 performance was superior in heel prick data as compared to cord blood
 data.
DOI: 10.5517/ccdc.csd.cc2mg0lq
title: CCDC 2426543: Experimental Crystal Structure Determination

description: Related Article: Deepak Kumar Patel, Martha Frey, Monika Kučeráková, Jan Macháček, Dmytro Bavol, Julian Picker, Christof Neumann, Zdeněk Bastl, Michal Dušek, Sundargopal Ghosh, Andrey Turchanin, Thalappil Pradeep, Tomas Base|2026|JACS Au|||doi:10.1021/jacsau.5c01656
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6086/d1709n
title: Replication of imaging metrics in Parkinson's disease

description: This data contains imaging data from two cohorts of Parkinson's
 disease and control subjects, recruited from the Emory Movement Disorders
 Clinic and scanned on two different MRI scanners. In Cohort 1, imaging
 data from 19 controls and 22 Parkinson’s disease patients were acquired
 with a Siemens Trio 3 Tesla scanner using a 2D gradient echo sequence with
 magnetization transfer preparation pulse. Cohort 2 consisted of 33
 controls and 39 Parkinson’s disease patients who were scanned on a Siemens
 Prisma 3 Tesla scanner with a similar imaging protocol.
description: Cohort 1 data was collected from 2012–2014 and included 19
 controls and 22 PD patients. Cohort 2 consisted of 33 healthy controls
 (HC) and 39 PD patients with data collected from 2015–2016. Controls were
 recruited from the community and the Emory Alzheimer’s Disease Research
 Center control population. MRI data for Cohort 1 were
 acquired with a Siemens Trio 3 Tesla scanner (Siemens Medical Solutions,
 Malvern, PA, USA) at Emory University with a 12-channel receive-only head
 coil. NM-MRI data was acquired using a 2D magnetization transfer (MT)
 prepared gradient echo (GRE) sequence [13, 14]: echo time (TE) /
 repetition time (TR) = 2.68 ms / 337 ms, slice thickness 3 mm, in plane
 resolution 0.39x0.39 mm<sup>2</sup>, field of view (FOV) =
 162–200 mm<sup>2</sup>, flip angle (FA) = 40°, 470 Hz/pixel
 bandwidth, 15 contiguous slices, and magnetization transfer preparation
 pulse (300°, 1.2 kHz off resonance, 10 ms duration), 7 measurements, scan
 time 16 minutes 17 seconds. For registration from subject space to common
 space, a T1 magnetization-prepared rapid gradient echo (MP-RAGE) sequence
 was acquired with the following parameters: TE/TR= 3.02 ms/2600 ms,
 inversion time = 800 ms, FA=8°, voxel size = 1.0 x 1.0 x 1.0
 mm<sup>3</sup>. Cohort 2 was scanned with a
 Siemens Prisma 3 Tesla scanner using a 64-channel receive-only coil.
 NM-MRI data were acquired using a 2D GRE sequence with a MT preparation
 pulse: TE/TR = 3.10 ms /354 ms, 15 contiguous slices, FOV = 162–200
 mm<sup>2</sup>, in plane resolution = 0.39 x 0.39
 mm<sup>2</sup>), slice thickness = 3mm, 7 measurements, FA =
 40°, 470 Hz/pixel receiver bandwidth, and MT pulse (300°, 1.2 kHz off
 resonance, 10 ms duration), scan time 17 minutes 12 seconds. For
 registration, structural images were acquired with an MP-RAGE sequence:
 TE/TR = 2.46 ms/1900 ms, inversion time = 900 ms, FA = 9°, voxel size =
 0.8 x 0.8 x 0.8
 mm<sup>3<sub>.</sub></sup> Data
 are raw and have not been processed.
description: Any image processing software (i.e. SPM, FSL, AFNI, ImageJ).
DOI: 10.17632/j5jscwz8xp
title: Bibliographic Dataset on RUSLE Parameter Applications for Soil Erosion and Sediment Yield Studies

description: This dataset compiles bibliographic information from peer-reviewed studies applying the Revised Universal Soil Loss Equation (RUSLE) and its parameters (R, K, LS, C, and P), along with the Sediment Delivery Ratio (SDR), for soil erosion and sediment yield estimation.
DOI: 10.17632/j5jscwz8xp.1
title: Bibliographic Dataset on RUSLE Parameter Applications for Soil Erosion and Sediment Yield Studies

description: This dataset compiles bibliographic information from peer-reviewed studies applying the Revised Universal Soil Loss Equation (RUSLE) and its parameters (R, K, LS, C, and P), along with the Sediment Delivery Ratio (SDR), for soil erosion and sediment yield estimation.
DOI: 10.5061/dryad.m37pvmd6c
title: The gut microbiota in chronic obstructive pulmonary disease varies by CT-verified emphysema status

description: Background and aim The association of the gut microbiota to chronic
 obstructive pulmonary disease (COPD) phenotypes is underexplored. We aimed
 to compare stool samples from COPD patients and healthy controls and
 relate findings to common COPD phenotypes. Methods Single-centre
 case-control study with 62 current and former smoking COPD patients and 49
 controls. DNA was extracted from stool samples, and the V3V4-region of the
 bacterial 16S-rRNA gene was sequenced. Emphysema was defined based on
 thoracic computed tomography (CT thorax) low attenuating areas
 ≥/&lt;10% at threshold -950 and -910 Hounsfield units respectively.
 Microbial data were analysed with QIIME 2 and R. Results The genus
 Veillonella was decreased and a genus belonging to class Clostridia was
 increased in COPD compared to healthy controls. Beta diversity measure
 Bray Curtis differed in emphysema compared to controls, and 27 genera were
 differentially abundant in emphysema vs. controls. Nine of these genera
 belonged to the family Lachnospiraceae. Lung function, blood counts and
 COPD assessment test scores were correlated with the relative abundance of
 several genera. Some of the genera showing the strongest correlation to
 lung function belonged to the family Lachnospiraceae. Conclusion We found
 small but statistically significant differences in the gut microbiota of
 COPD versus controls. Larger differences were seen in the gut microbiota
 according to CT-verified emphysema status. Correlations between the gut
 microbiota and lung function, blood cell counts, and CAT score were
 found.           
description: QIIME 2 and R