DOI: 10.5061/dryad.b9m61cg
title: Data from: Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

description: Abstract missing
description: I_triloba_NSP323_stress_FPKM_expression_matrix_v3_anno.xlsxFPKM values of v3 high confidence gene models for 15 I. triloba abiotic and biotic stress RNA-seq libraries. The libraries are described in the 'Library Key' worksheet.I_triloba_NSP323_FPKM_expression_matrix_v3_anno.xlsxFPKM values of v3 high confidence gene models for 6 I. triloba RNA-seq libraries (flower, flowerbud, leaf, root1, root2, stem).NSP323_triloba_v3.hc.func_anno.txtPutative functional annotation of high confidence gene models.NSP323_triloba_v3.hc.gene_models.cdna.faNucleotide sequences of the high confidence gene model transcript sequences (cDNA).NSP323_triloba_v3.hc.gene_models.cds.faNucleotide sequences of the high confidence gene model coding sequences (CDS).NSP323_triloba_v3.hc.gene_models.gff3High confidence gene model annotation in GFF3 format.NSP323_triloba_v3.hc.gene_models.pep.faAmino acid sequences corresponding to the high confidence gene model coding sequences.NSP323_triloba_v3.hc.repr.gene_models.txtList of representative high confidence gene models (longest CDS).NSP323_triloba_v3.working.gene_models.cdna.faNucleotide sequences of the working gene model transcript sequences (cDNA).NSP323_triloba_v3.working.gene_models.cds.faNucleotide sequences of the working gene model coding sequences (CDS).NSP323_triloba_v3.working.gene_models.gff3Working gene model annotation in GFF3 format.NSP323_triloba_v3.working.gene_models.pep.faAmino acid sequences corresponding to the working gene model coding sequences.NSP323_triloba_chr_v3.faIpomoea triloba (NSP323) Genome Assembly (v3) - FASTA formatNSP323_triloba_chr_v3.hm.faIpomoea triloba (NSP323) Hard Masked Genome Assembly (v3) - FASTA formattrilo_aln_8x8_parents_freebayes_mRNA_regions.vcf.gzQuality-filtered variant calls for the MDP clones based on alignment of genomic reads to I. triloba.I_trifida_NSP306_stress_FPKM_expression_matrix_v3_anno.xlsxFPKM values of v3 high confidence gene models for 15 I. trifida abiotic and biotic stress RNA-seq libraries. The libraries are described in the 'Library Key' worksheet.I_trifida_NSP306_FPKM_expression_matrix_v3_anno.xlsxFPKM values of v3 high confidence gene models for 8 I. trifida RNA-seq libraries (callus_flower, callus_stem, flower, flowerbud, leaf, root1, root2, stem).NSP306_trifida_v3.hc.func_anno.txtPutative functional annotation of high confidence gene models.NSP306_trifida_v3.hc.gene_models.cdna.faNucleotide sequences of the high confidence gene model transcript sequences (cDNA).NSP306_trifida_v3.hc.gene_models.cds.faNucleotide sequences of the high confidence gene model coding sequences (CDS).NSP306_trifida_v3.hc.gene_models.gff3High confidence gene model annotation in GFF3 format.NSP306_trifida_v3.hc.gene_models.pep.faAmino acid sequences corresponding to the high confidence gene model coding sequences.NSP306_trifida_v3.hc.repr.gene_models.txtList of representative high confidence gene models (longest CDS).NSP306_trifida_v3.working.gene_models.cdna.faNucleotide sequences of the working gene model transcript sequences (cDNA).NSP306_trifida_v3.working.gene_models.cds.faNucleotide sequences of the working gene model coding sequences (CDS).NSP306_trifida_v3.working.gene_models.gff3Working gene model annotation in GFF3 format.NSP306_trifida_v3.working.gene_models.pep.faAmino acid sequences corresponding to the working gene model coding sequences.NSP306_trifida_chr_v3.faIpomoea trifida (NSP306) Genome Assembly (v3) - FASTA formatNSP306_trifida_chr_v3.hm.faIpomoea trifida (NSP306) Hard Masked Genome Assembly (v3) - FASTA formattrifi_aln_8x8_parents_freebayes_mRNA_regions.vcf.gzQuality-filtered variant calls for the MDP clones based on alignment of genomic reads to I. trifida.gt4sp_v3_asm_anno_readme.txtDescription of files included in Dryad submission.