cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zhkucu
title: Occurrence Download

description: A dataset containing 161005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix, Populus)",
 "HasCoordinate is true",
 "Geometry POLYGON ((2.402616 49.40706, 6.548409 49.40706, 6.548409 51.59495, 2.402616 51.59495, 2.402616 49.40706))",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 161005 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016702-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/354yks5f2d
title: Loamy soils under and nearby deadwood after mass windthrow in mesic broad-leaved forest

description: Our study is an attempt to determine the role of decaying wood of different tree species in shaping the properties of loamy soils of mesic broad-leaved forests located in the Central Russian Upland (Kaluzhskie Zaseki State Nature Reserve).
DOI: 10.17632/vnvb68v6jy
title: Responses of ChatGPT and Analysis

description: The data categorises the interactive recordings and analyses of Mandarin language learning activities between Mandarin learners and ChatGPT. The initial column displays the enquiries posed by the learners during their interaction with ChatGPT. The second column documents the responses of ChatGPT, whereas the third column presents the analysis and findings.
DOI: 10.17632/cxp266hhwk
title: SIMULAR PROCESOS DE LOGÍSTICA Y DISTRIBUCIÓN

description: Esta guia busca la apropiación del conocimiento sobre planeación en logística por medio de una practica de simulacion
DOI: 10.17632/fw3bcrxknf
title: Dataset for "Evolving dunes under flow reversals: from an initial heap toward an inverted dune"

description: In this dataset, you can find Matlab files used to read and process .dfm videos. Also, simulation files were provided for a subaqueous barchan dune from a conical pile as an initial condition.
DOI: 10.17632/hw55m7zz7j
title: Financial information/accounting manipulation literature’s bibliometric dataset: A comprehensive analysis of scientific publications

description: This article presents a data set for a bibliometric analysis of study on financial information manipulation in the literature
DOI: 10.17632/kpvgtm6hh6
title: Multi-Level Association Rule Mining and Network Pharmacology to Identify the Polypharmacological Effects of Herbal Materials and Compounds from Traditional Medicine

description: An integrated analysis using association rule mining and network pharmacology to identify therapeutic combinations of herbal materials and compounds in traditional medicine.

Traditional medicine (TM) has been used to treat a variety of symptoms and diseases through the combination of herbal materials, and it also contributes to the pharmaceutical industry with several advantages such as fewer side effects and significant cost reductions. However, the rules for combining ingredients are not well organized, and complex multi-compound characteristics make it difficult to understand the pharmacological mechanisms among the herbal materials used in TM. In silico approaches that have been proposed to analyze TM and herbal materials require large amount of high-quality structural information or physicochemical properties or have limitations due to ease of interpretation or scope of analysis.

In this work, we proposed an approach named InPETM, that integrates association rule mining (ARM) and network pharmacology analyses to identify polypharamcological effects of herbal materials and compounds from TM. Specifically, InPETM performs analyses combining ARM and network pharmacology-based method at the herb-level and compound-level, respectively, and identifies potential herbal material combination and compound candidates for the phenotype. InPETM provided results of pharmacological effects of herbal material combination and compound and identification of mechanism of action in human protein interactome network, which were confirmed by further structural network analysis and literature review analysis. These results indicate that InPETM can contribute to drug development in TM through better understanding of polypharmacological features of herbal materials.
DOI: 10.17632/ntc3zvyrsx
title: Supplementary tables

description: Supplementary tables
DOI: 10.6084/m9.figshare.19229130.v1
title: Sr-Nd isotopic values and clay minerals of the grain-size fractions from the upper 274 cm of IODP Site U1456.docx

description: Sr-Nd isotopic values and clay minerals of the grain-size fractions from the upper 274 cm of IODP Site U1456
DOI: 10.17632/nhfp6nsr6n
title: Smoothed Dissipative Particle Dynamics package for LAMMPS

description: An isothermal implementation of Smoothed Dissipative Particle Dynamics (SDPD) for LAMMPS is presented. SDPD is useful for hydrodynamics simulations at mesoscale where the effect of thermal fluctuations are important, but a molecular dynamics simulation is prohibitively expensive. We have used this package to simulate diffusion of spherical colloids. The results (particularly the long-time behaviour of velocity autocorrelation function) are in agreement with theoretical models that take hydrodynamic interactions into account.
DOI: 10.17632/tbdhjvrf6w
title: The remarkable visual system of a Cretaceous crab

description: Raw measurements of eye diameter and carapace length in Brachyura
DOI: 10.17632/7rk49739mf
title: A comprehensive human gastric cancer organoid biobank captures tumor subtype heterogeneity and enables therapeutic screening. Yan HHN et al. Mendeley Dataset 6

description: Copy number aberrations and somatic mutant fraction are stably maintained in gastric cancer organoids even after long-term culture
DOI: 10.17632/s3cn697m5f
title: Insects and aviation safety: the case of the keyhole wasp Pachodynerus nasidens (Hymenoptera: Vespidae) in Australia

description: Data from a trap nest study using replica pitot probes was used to assess the risk to aircraft from the keyhole wasp, Pachodynerus nasidens (Hymenoptera: Vespidae). The data used was the number of blocked pitot probes of a number of airframe types at 4 locations at Brisbane Airport, Australia, over a period of 39 months. The effects of covering probes (to prevent nesting) was examined using mean time before failure analyses, and the time probes are left uncovered and aircraft movements used to model a number of scenarios. These were used to estimate the cost of the lowest acceptable level of risk. Standard risk analysis and a bow tie risk assessment were conducted to illustrate points of intervention, and potential management measures (i.e. control or eradication) for the keyhole wasp discussed. The risk of spread of the keyhole wasp in Australia was modeled using climate projections based on equivalent climates in its home range in coastal Brazil
DOI: 10.6084/m9.figshare.11316212.v1
title: SCA17 mice RNA-seq on CB,STR and PFC.xlsx

description: RNA sequencing was performed on the cerebellum, prefrontal cortex and striatum of 3-month-old germline SCA17 knock-in mice and age matched wild-type mice.
DOI: 10.17632/8f8y885py3
title: The GRIA1 AMPA receptor subunit and selective learning

description: Data for Experiments 1-3
DOI: 10.17632/czzb4jb8ss
title: SARS-CoV-2 restructures host chromatin architecture

description: Some viruses restructure host chromatin, influencing gene expression, with implications for disease outcome. Whether this occurs for SARS-CoV-2, the virus causing COVID-19, is largely unknown. Here, we characterized the 3D genome and epigenome of human cells after SARS-CoV-2 infection, finding widespread host chromatin restructuring that features widespread A compartmental weakening, A-B mixing, reduced intra-TAD contacts and decreased H3K27ac euchromatin modification levels. Such changes were not found following common-cold virus HCoV-OC43 infection. Intriguingly, the cohesin complex was significantly depleted from intra-TAD regions, indicating that SARS-CoV-2 disrupts cohesin loop extrusion. These altered 3D genome/epigenome structures correlated with transcriptional suppression of interferon response genes by the virus, while increased H3K4me3 was found in the promoters of pro-inflammatory genes highly induced during severe COVID-19. These findings show that SARS-CoV-2 acutely rewires host chromatin, facilitating future studies of the long-term epigenomic impacts of its infection. This work is to be published in Nature microbiology (Wang et al., 2023).
DOI: 10.17632/rgg4538296
title: Indirect Impacts of Fire on Vertebrates

description: The information in this CSV file represents the identification of vertebrate animals indirectly impacted by fire in Brazil. We built a database of images received by firefighters, managers and people directly involved in fighting fires and implementing prescribed burns. Additionally, databases provided by the non-governmental organization (NGO) Onçafari and the Wild Animal Rehabilitation Center (CRAS) of the State of Mato Grosso do Sul (MS) were included, and photographs collected from online news sources displayed such information. This database is supported by the citizen science initiative and is part of the first collaborator's master's research.
Each line corresponds to an animal impacted by the fire. We compiled: i) biome, ii) state, iii) location or name of the Protected Area, iv) fire event (prescribed burn or wildfire), v) class, vi) order, vii) family, viii) genus, ix) species, and x) body size. Animals were classified into three body size categories: small (less than 1 kg), medium (between 1 kg and 7 kg), and large (greater than 7 kg) (Emmons & Feer, 1997; Chiarello, 2000), based on the average weight of the species. 
The type of impact was classified as: i) indirect negative, for cases in which the animals were present alive in the burned areas, but did not show signs of burns, smoke inhalation, desiccation and physiological stress, and ii) indirect positive, for situations in which the recorded individuals were foraging in the burned areas.

Chiarello, A. G. (2000). Density and population size of mammals in remnants of Brazilian Atlantic Forest. Conservation Biology, 14(6), 1649-1657. https://doi.org/10.1111/j.1523-1739.2000.99071.x
Emmons, L. H. & Feer, F. (1997). Neotropical Rainforest Mammals: A Field Guide. University of Chicago Press, Chicago and London.
DOI: 10.6084/m9.figshare.25594854.v1
title: ROSPaCe_reduced_noperiodicity

description: Reduced version of the no periodicity dataset applying the same methodology reported for the ROSPaCe reduced dataset.
DOI: 10.15468/dl.79ft2r
title: Occurrence Download

description: A dataset containing 3832194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Apidae, Megachilidae, Halictidae, Andrenidae, Colletidae, Melittidae, Stenotritidae)"
 ]
}

 The dataset includes 3832194 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009127-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/84wxjtxfvh
title: Datasets for retrofitting reinforced concrete beams utilizing engineered cementitious composite

description: This comprehensive dataset offers an in-depth analysis of the attributes related to Engineered Cementitious Composites (ECC) retrofitted beams, an area growing in importance within structural engineering. Encompassing both qualitative and quantitative variables, it grants a holistic perspective on the features, emerging trends, and established practices in the domain of ECC retrofitting. Through rigorous data gathering and systematic classification, this collection unveils the predominant strategies employed for retrofitting, the intrinsic properties of these beams and the expected performance outcomes of various techniques. As a valuable resource, it provides to scholars, educators, and industry experts, striving to deepen the comprehension of ECC retrofitting, including its subtleties and broader consequences. Investigating this dataset reveals discernible patterns that could steer subsequent academic inquiries, influence experimental methodologies, and refine industry standards. Additionally, it underscores the collective endeavors in this sector, accentuating the paramountcy of data-informed choices in structural engineering. In a time when retrofitting structures is pivotal for ensuring both sustainability and resilience, this dataset emerges as a guiding light, furnishing a robust foundation for progress in the field of ECC retrofitted beams.
DOI: 10.17632/n9ys3nwy4k
title: Phylogenomic and Evolutionary Insights into Lipoprotein Lipase Genes (lpl) in Tambaqui: Gene Duplication, Tissue-Specific Expression, and Physiological Implications

description: This dataset includes two tables: (1) Predicted N-glycosylation sites in LPL/Lpla/Lplb sequences across vertebrates, and (2) Predicted N-glycosylation sites in LPL/Lpla/Lplb sequences across vertebrates, including Lpla and Lplb from tambaqui and other teleosts. Any potential crossing the default threshold of 0.5, represents a predicted glycosylated site (as long as it occurs in the required sequon Asn-Xaa-Ser/Thr without Proline at Xaa). Sites with + Potential (&lt; 0.5) are highlighted in yellow, ++ Potential (&lt; 0.5) are highlighted in green and +++ Potential (&lt; 0.75) are highlighted in blue. non-glycosylated sites - Potential (&lt; 0.5) are highlighted in red
DOI: 10.17632/v7shvfs3fb
title: Dataset of Digital Reviews in Tourism

description: User Generated Content (UGC) sourced from a well-recognized online platform that serves as a repository for user-contributed reviews. We collected data from 56,448 reviews associated with Bali's destinations.
DOI: 10.17632/7bx659nthd
title: Zoom fatigue among medical students: Predictors and association with depression

description: Objective: This study aims to evaluate the associated factors of Zoom fatigue and explore its correlation with depression among medical students during the COVID-19 pandemic.
Methods: This cross-sectional study was conducted among 1st to 6th-year Thai medical students. The online survey included a demographic and health behavior questionnaire, the Patient Health Questionnaire-9 (PHQ-9), and the Thai version of the Zoom Exhaustion & Fatigue Scale (ZEF-T).
Results: Among the 386 participating students, 221 (57%) were female, with a mean age of 20.6 years. The prevalence of Zoom fatigue was 9.6%. The prevalence of depression was 61.9%, and there was a significant correlation between depression and the Zoom fatigue (p = 0.004).
DOI: 10.17632/cb2wjcd2st
title: Performance characteristics of a hydrogen-CNG fuelled spark-ignition engine

description: This dataset consists of multiple performance parameters of an SI engine fuelled with hydrogen enriched CNG (compressed natural gas), operating under four different loading conditions (10 kg, 12 kg, 14 kg and 16 kg). It not only consists of raw data collected directly through the data acquisition software of an engine dynamometer but also consists of data visualizations to help interpret the data. To further aid the interpretation, a comparison between actual and theoretical values has also been included.
DOI: 10.17632/f83p3fp7ng
title: SISTEMA GENERAL DE SEGURIDAD SOCIAL EN SALUD COLOMBIA

description: El presente dataset contiene los datos de las encuestas realizadas en la investigación denominada "Modelo administrativo para prevenir la corrupción 
en el sistema general de seguridad social en salud (SGSSS) en Colombia"
DOI: 10.7274/28786133.v1
title: Maternal Emotion Regulation Difficulties and Benevolent Childhood Experiences as Moderators of the Intergenerational Transmission of Maltreatment

description: Child maltreatment is a pervasive experience that creates a cascade of negative effects including numerous psychological and physical health difficulties throughout the lifespan. Further, mothers’ own adverse childhood experiences (ACEs) serve as a risk factor for child maltreatment, sometimes leading to an intergenerational transmission of maltreatment. Maternal emotion regulation (ER) and maternal benevolent childhood experiences (BCEs) are promising variables that may interact with this cycle of maltreatment. The current study examined the impact of maternal ER and BCEs on the intergenerational transmission of maltreatment in a sample of 98 mothers and their 6- to 8-year-old children. Specifically, we hypothesized that (1) maternal ACEs would be positively associated with risk for child maltreatment; (2) maternal emotion regulation (ER) difficulties would exacerbate the association between maternal ACEs and risk for perpetrating maltreatment, such that mothers with higher difficulties in ER would have an increased risk for perpetrating maltreatment; and (3) maternal benevolent childhood experiences (BCEs) would buffer this association, such that more BCEs would be associated with decreased risk for perpetrating child maltreatment. Results found that maternal ACEs were significantly associated with current psychological aggression towards their child, and that maternal ER significantly interacted with this association such that mothers with higher emotion dysregulation had a stronger association between ACEs and current psychological aggression. Understanding how additional variables may affect the relationship between maternal ACEs and risk for perpetrating maltreatment may help inform interventions targeting preventing child maltreatment.
DOI: 10.17632/thjjpv3df3
title: Unconventional machine learning in the biomedical sciences

description: Data for paper unconventional machine learning in biomedical sciences
DOI: 10.17632/28v577kcpr
title: Supplemental eEF2K regulates pain through translational control of BDNF Smith et al

description: Raw fluorescence microscopy image files relating to Figures S2, S3, S5 and S6. For all images, channel 1 represents PRPH immunofluorescence, and channel 2 represents the quantified target (PLA signal, p-eEF2, puromycin, or p-eIF2alpha). Details for each can be found in the figure legend. Also includes un-cropped images of immunoblots relating to Figures 1 and S3.
DOI: 10.6084/m9.figshare.22310404.v1
title: R-Markdown file

description: R markdown file used to generate all statistical analyses referenced in the manuscript.
DOI: 10.17632/49hv5brf92
title: Working example data for generating syntehtic 4-second utility-scale PV output time series from hourly solar irradiance data

description: Generation of synthetic PV output time series at 4 seconds using hourly solar irradiance. This dataset is a working example for the methodology proposed in the article "Generation of synthetic 4-second utility-scale PV output time series from hourly solar irradiance data". The codes and dataset can be used to generate synthetic 4-second utility-scale PV output time series for a PV plant based on the hourly solar irradiance and the 4-second training data derived from the reference PV plants that are operating in the Australian National Electricity Market (NEM). Corresponding author: Kanyawee Keeratimahat (k.keeratimahat@unsw.edu.au).
DOI: 10.17632/dnsrsmkzkg
title: Data from: Species boundaries to the limit: validating species delimitation methods is critical to avoid taxonomic inflation in the genomic era

description: This is a data repository containing the following files: 
Raw demultiplexed reads for all specimens used in the study: Species boundaries to the limit: validating species delimitation methods is critical to avoid taxonomic inflation in the genomic era
DOI: 10.6084/m9.figshare.8319965.v1
title: Supplementary Material for: Glucagon-Like Peptide-1-, but not Growth and Differentiation Factor 15-, Receptor Activation Increases the Number of Interleukin-6-Expressing Cells in the External Lateral Parabrachial Nucleus

description: Interleukin (IL)-6 in the hypothalamus and hindbrain is an important downstream mediator of suppression of body weight and food intake by glucagon-like peptide-1 (GLP-1) receptor stimulation. CNS GLP-1 is produced almost exclusively in prepro-glucagon neurons in the nucleus of the solitary tract. These neurons innervate energy balance-regulating areas, such as the external lateral parabrachial nucleus (PBNel); essential for induction of anorexia. Using a validated novel IL-6-reporter mouse strain, we investigated the interactions in PBNel between GLP-1, IL-6, and calcitonin gene-related peptide (CGRP, a well-known mediator of anorexia). We show that PBNel GLP-1R-containing cells highly (to about 80%) overlap with IL-6-containing cells on both protein and mRNA level. Intraperitoneal administration of a GLP-1 analogue exendin-4 to mice increased the proportion of IL-6-containing cells in PBNel 3-fold, while there was no effect in the rest of the lateral parabrachial nucleus. In contrast, injections of an anorexigenic peptide growth and differentiation factor 15 (GDF15) markedly increased the proportion of CGRP-containing cells, while IL-6-containing cells were not affected. In summary, GLP-1R are found on IL-6-producing cells in PBNel, and GLP-1R stimulation leads to an increase in the proportion of cells with IL-6-reporter fluorescence, supporting IL-6 mediation of GLP-1 effects on energy balance.
DOI: 10.17632/2p3gkkww4n
title: A 3D printed camera bracket for the DJI Phantom 3

description: This STL file can be used to print a camera bracket that was designed to fit on the legs of the DJI Phantom 3. The camera bracket attaches to the legs of the Phantom 3 using zip ties and is compatible with the standard three-pronged GoPro mount, making it useful for many consumer cameras. The bracket can hold a small 5V USB power bank and the design does not interfere with the Phantom 3's camera.
DOI: 10.17632/zt9wszx28y
title: 3D LiDAR and Photogrammetry Scans of a Stilt House in Tai O Village - 2022 - Case 478523

description: This data includes a point cloud file from a combined photogrammetric and LiDAR scan of a stilt house in Tai O Village. The house is designated "Case 478523" in the research project record. Researchers collected the scan using a single, approximately 10 minute walk-through of the house with the Leica-brand BLK2Go model 3D environment scanner. The scan describes the interior and partial exterior of a stilt house in high detail and color. The scan has been decimated to a voxel size of 5 mm to reduce file size. The data provides clear enough rendering of the physical conditions of the house to allow interpretation of the scan into description of the house's construction, contents, and spatial use. The data is available under embargo of one year to protect the personal information of residents of the house, provided for purposes of digital conservation of the building, and for interpretation of the house's physical conditions and interior contents through further research. More detailed information on the dataset, including the date the scan was conducted, the location of the house, and related interview and survey datasets are available upon reviewed request.