cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19510807.v1
title: Supplementary Material for: Microarray Analysis Confirms ImmunoCAP-Fluorescence Enzyme Immunoassay Results on Specific IgE in Patients with Atopic Dermatitis and Suspected Birch Pollen-Related Food Allergy

description: <b><i>Background:</i></b> Previous studies demonstrated that birch pollen-related foods can cause late eczematous responses in birch pollen-sensitized patients with atopic dermatitis (AD). However, suitable markers to predict birch pollen-related food allergy in patients with AD are still lacking. <b><i>Objective:</i></b> We evaluated the correlation of the results from ImmunoCAP® fluorescence enzyme immunoassay (FEIA) singleplex and ImmunoCAP® immuno solid-phase allergen chip (ISAC) multiplex system in AD patients and investigated the diagnostic validity of allergen microarray analysis, measuring specific IgE (sIgE) with ImmunoCAP® ISAC to predict birch pollen-related food allergy in patients with AD. <b><i>Methods:</i></b> A total of 19 children and adults with AD, existing IgE-mediated birch pollen sensitization, and suspected birch pollen-related food allergy underwent a double-blind placebo-controlled food challenge (DBPCFC) in the clinical routine. Total and sIgE levels to birch pollen, Bet v 1, Bet v 2, and birch pollen-related foods (apple, carrot, celery, and hazelnut) were determined prior to the DBPCFC by ImmunoCAP®-FEIA. Additionally, allergen microarray ImmunoCAP® ISAC analysis was performed. Data were analyzed retrospectively. <b><i>Results:</i></b> Twelve out of 19 patients (63% responders) experienced an allergic reaction upon DBPCFC. Overall, 7 patients (37%) developed a significant deterioration of AD with a median increase of 12.4 points in the scoring of atopic dermatitis (SCORAD) index (range 10.0–15.7). Oral allergy syndrome was the predominant immediate-type symptom (<i>n</i> = 11/12 responders). There were no differences in sensitization frequencies regarding allergens of the pathogenesis-related protein family 10 between responders and non-responders. In all patients, correlation of IgE levels determined with ImmunoCAP® ISAC and ImmunoCAP®-FEIA, respectively, was significant with high correlation coefficients regarding birch pollen allergen extract, rBet v 1, and rBet v 2 (<i>r</i><sub>s</sub> &gt; 0.8, <i>p</i> &lt; 0.001) and lower but also significant correlation coefficients regarding food allergens (<i>r</i><sub>s</sub> &lt; 0.8, <i>p</i> &lt; 0.05–&lt;0.001). <b><i>Conclusion:</i></b> ImmunoCAP® ISAC microarray allows displaying a differentiated sensitization profile in birch pollen-sensitized patients with AD. However, IgE-mediated sensitization against birch pollen-related allergens revealed by the allergen multiplex system does not predict late eczematous reactions upon DBPCFC with birch pollen-related foods.
DOI: 10.17632/hjhpkgxx5n
title: Data for: Microbial communities network analysis of anaerobic reactors fed with bovine and swine slurry

description: Source code of Network Analysis-microbiome_network_website.zip
DOI: 10.17632/kjzn8h7dd5
title: Data for: Changing Practice: Trends in Skeletal Surgery for Obstructive Sleep Apnea

description: Raw Data Trends in Skeletal Surgery
DOI: 10.21233/7xr4-8274
title: Gunma Prefecture ostracode surface sample dataset

description: Raw data for the Gunma Prefecture ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.17306771.v1
title: Data File S1

description: Collection of publicly available HQ MAGs selected for the study (accessions numbers and leaf names)
DOI: 10.6084/m9.figshare.23612706.v1
title: Artificial intelligence for small hydroponics farms employing fuzzy logic systems and economic analysis

description: ABSTRACT The application of artificial intelligence (AI) in modern agriculture has attracted increasing attention since its automation has the potential to accelerate food production with efficiency in resource use. Fuzzy logic, as one AI method, can be applied in hydroponics as an automation function of a nutrient mixing machine. There have been some inventions of nutrient mixing machines in commercial-scale agribusiness but not yet at the level of the small and medium farms that are mostly found in developing countries. This study constructed a hydroponics nutrient mixing machine employing a fuzzy logic method, calculated the machine’s efficiency, and evaluated its economic application. The automated nutrient mixing machine using fuzzy logic was efficient, and both theoretical field capacity and actual field capacity indicators were higher with the use of the nutrient mixing machine compared to manual nutrient mixing. This machine saves 78% of the labor normally used for mixing nutrients, with a saving of up to 42.86% in the nutrients used compared with mixing manually.
DOI: 10.17632/km4hh5265z
title: Implications of high-dose vitamin D3 with and without vitamin C on bone mineralization and blood biochemical factors in broiler breeder hens and their offspring

description: raw data - Implications of high-dose vitamin D3 with and without vitamin C on bone mineralization and blood biochemical factors in broiler breeder hens and their offspring
DOI: 10.17632/pk8t5ghxht
title: Sleep quality, stress, and discounting

description: These are data from the study: 4. Law, O. 1, & Rasmussen, E.B. (2023). Poor sleep quality and stress differentially predict delay discounting for food, but not money. Journal of Behavioral Decision Making.
DOI: 10.6084/m9.figshare.26462056.v1
title: Supplementary Material for: Functional Polymorphisms Regulate FOXO1 Transcript Expression and Contribute to the Risk and Symptom Severity of HDM-induced Allergic Rhinitis

description: Introduction
FOXO1 plays an important role in regulating immune processes that contribute to allergic inflammation, however, genetic variants influencing FOXO1 expression in AR pathogenesis remain unclear. This study aimed to investigate the functional effect of FOXO1 single nucleotide polymorphisms (SNPs) on AR development by performing genetic association and functional analysis studies.
Methods
This study belongs to a part of an ongoing Singapore/Malaysia cross-sectional genetics and epidemiological study (SMCSGES). We assessed the associations of FOXO1 transcript expression levels in peripheral blood mononuclear cells (PBMC) with AR phenotype, total nasal symptom score (TNSS), and SNP genotype in a sub-cohort of n=658 individuals from the SMCSGES population. Associations of FOXO1 SNPs with AR were assessed in a cohort of n=5072 individuals from the SMCSGES population. In vitro promoter luciferase assay was used to evaluate the effect of AR-associated SNPs on FOXO1 promoter activity.
Results
FOXO1 transcript expression in PBMC was significantly associated with the risk of AR (p&lt;0.05) and TNSS among AR patients (p&lt;0.0001). We identified a significant association between tag-SNPs rs9549246 and FOXO1 transcript expression in PBMC from the SMCSGES sub-cohort and the multi-ethnic eQTLGen consortium (false discovery rate-adjusted p&lt;0.05). The minor allele “A” of tag-SNP rs9549246 was significantly associated with a higher risk of AR (p=0.04422, odds ratio=1.21, 95% confidence interval=1.01-1.45) in the SMCSGES genotyping cohort (n=5072). In vitro luciferase assay showed the minor allele “A” of rs35594717 (tagged by rs9549246) was significantly associated with a higher FOXO1 promoter activity (p&lt;0.05).
Conclusion
FOXO1 transcript expression in PBMC has a strong association with the risk and symptom severity of AR. Genetic variants tagged by rs9549246 were shown to affect the expression of FOXO1 and contribute to the development of AR in the SMCSGES population.
DOI: 10.17632/f3frtvt6f4
title: Political uncertainty, realized volatility and jumps in the Chinese stock market

description: Our initial sample consists of all the Chinese A-share listed firm samples spans from January 1, 2014 to December 31. The 5-min frequency price data and the single trading data containing the price, volume and the buying/selling initiation information are collected from the CSMAR high-frequency database; the former data are used to calculate the RV. Following Wang et al. (2016), we use the local official replacement to measure the LPU, that is, for the firm i in day t (in month m), LPUi,t takes the value of 1 if observing a mayor or the party head turnover during the (m-1, m+1) months in the firms’ registered prefecture city, and 0 otherwise. The detailed information of local government official replacements is collected from China Economic Net (http://www.ce.cn/) and other authoritative government website manually. The political sensitively data include the “innate” state ownership (SOE) and the “postnatal” Chairman/CEO political connection (PC), which are collected from the CSMAR database and compiled as Fan et al. (2007). We delete the sample-firms going public and the firms with trading days less than two years, and the samples with missing variables. Finally we get 2048676 daily samples comprising 2318 firms, with the maximum length of 1219 trading days.
DOI: 10.6084/m9.figshare.5128417.v1
title: Supplementary Material for: Sodium Citrate Inhibits Endoplasmic Reticulum Stress in Rats with Adenine-Induced Chronic Renal Failure

description: <b><i>Background/Aims:</i></b> Endoplasmic reticulum stress (ERS) is an important self-protective cellular response to harmful stimuli that contribute to various diseases, including chronic renal failure (CRF). Sodium citrate plays an important role in antioxidant and cellular immunity, but whether it improves ERS in CRF is unclear. <b><i>Methods:</i></b> The rats were randomly divided into five groups: the control group, the sodium citrate control group, the model group, model rats with low dose sodium citrate (216 mg/kg), and model rats with a high dose of sodium citrate (746 mg/kg). The rats were euthanized at 6, 8, 12, and 16 weeks with their blood and renal tissue in detection. <b><i>Results:</i></b> The increased concentrations of blood urea nitrogen and serum creatinine in the model group were significantly decreased by sodium citrate treatment. Hematoxylin-eosin and Masson staining showed that sodium citrate treatment apparently improved renal pathological changes in CRF rats. Western blot analysis showed that sodium citrate treatment decreased the protein levels of transforming growth factor-beta 1 and collagen type IV, which were increased in model rats. Moreover, immunohistochemical staining demonstrated that sodium citrate could effectively reduce the protein expression of glucose-regulated protein 78 kDa and CCAAT/enhancer-binding protein homologous protein in the model rats, which was consistent with western blot results. Additionally, the high dose of sodium citrate had a stronger protective effect in CRF rats than the low dose of sodium citrate. <b><i>Conclusions:</i></b> Sodium citrate has a protective effect on CRF through its effects on ERS.
DOI: 10.6084/m9.figshare.20037389.v2
title: Data_Multimodal_Perception_Cells

description: Single cell data sets containing the measured 4i features from which all analysis presented can be recreated. <br> Check meta header in the corresponding code files from Github for further details.
DOI: 10.6084/m9.figshare.27160602.v2
title: Global dryland phenology dataset (GDPD)

description: The global dryland phenology dataset (GDPD) provides phenological metrics of global dryland at 500 meters spatial resolution and annual time step from 2001 to 2019. The phenological metrics are derived from time series of the daily 500-m Enhanced Vegetation Index (EVI2) derived from MODIS Nadir Bidirectional Reflectance Distribution Function Adjusted Reflectance. There are up to two growing seasons per year that can be retrieved.Abbreviations for phenological metrics:SOS: the start of the growing seasonEOS: the end of the growing seasonAny questions about this dataset can be corresponded to Yu Zhou (zhouy.work@gmail.com) and Li Zhang (zhangli@aircas.ac.cn)
DOI: 10.17632/5jk89vpbh2
title: CUSP9v3-U3118-part2

description: Label-free live-cell imaging and endpoint cell viability data obtained from exposing the patient derived glioblastoma cell line U3118 (see related article below), on all combinations of the CUSP9v3 protocol from order 5 to 9. The standard-of-care drug, temozolomide, was used as add-on to all combinations. 

There are 4 .zip files containing all the imaging data, one for each 384-well plate used. Every .zip file contains 5544 grayscale images of size 800x992 pixels and every experimental well consists of a temporal sequence of 18 such images. The experiment was performed in quadruplicate and the associated plate layouts used for acoustic liquid dispension are also included as .xlsx files. The .log file contains the cell viability data for all plates.
DOI: 10.17632/7jp8hrdmn8
title: Dataset for Cochrane Pregnancy and Childbirth Group review updates priority-setting exercise

description: Objective: To engage in a priority-setting exercise with both clinicians and consumers to determine systematic reviews of highest priority to update. Study Design & Setting: The US Satellite of the Cochrane Pregnancy & Childbirth Group (US-PCG) narrowed a list of over 600 review titles due for updating down to 97 review titles based on US relevance. The US-PCG then used the Delphi method to explore consensus on which titles to prioritize for updating. In Round 1, participants self-identified as a clinician/researcher or consumer, and then ranked titles into “high”, “medium”, and “low” priority groups. In Round 2, participants were given Round 1 results and asked to rank their top 5 titles. Results were analyzed within and between groups.
DOI: 10.17632/ktkr3jvny5
title: Replication Package "Wealthy Americans and redistribution: The role of fairness preferences"

description: Replication Package "Wealthy Americans and redistribution: The role of fairness preferences"
Data Files, Stata Code, R Code
DOI: 10.6084/m9.figshare.26550262.v1
title: CBL Student Perceptions Data set

description: Student and Faculty perceptions of the use of CBL.
DOI: 10.17632/yhsgmynccf
title: Labeled Official Indonesian Sign Language (SIBI) Alphabet

description: SIBIAlphabet is a labeled sign language letter dataset that is officially recognized by the Ministry of Education and Culture of the Republic of Indonesia. The SIBIAlphabet picture is composed of four categories: mono background datasets (1,440 images), mono background with augmentation (3,870 images), multi background (7,200 images), and multi background with augmentations (19,440 images). Image Augmentation by applying blur, noise, brightness, and rotate.
DOI: 10.6084/m9.figshare.24025728.v5
title: SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects

description: SAFE-<i>h</i><sup>2 </sup>is developed under an academic research study to provide proper estimates of SNP heritability. For this, SAFE-<i>h</i><sup>2 </sup>creates heritability profiles to prevent SNPs with illogical negative contributions to heritability. It also minimizes the contributions by false-positive SNP hits. Finally, SAFE-<i>h</i><sup>2</sup> can perform a joint analysis on both additive and non-additive allelic effects. Therefore, it also provides the chance for GWASs to perform linear association tests while capturing both additive and non-additive effects.<br><b>Software Availability:</b> SAFE-<i>h</i><sup>2 </sup>(SNP Allocation For Estimating Heritability)<b> </b>contains the compiled SAFE-<i>h</i><sup>2</sup> scripts with related installation and usage manual<b> (Download link: </b><b>https://github.com/SAFE-h2/SAFE-h2-v2024-1).</b><br>An old version also exists at https://github.com/SAFE-h2/SAFE-h2.Read the related research article “<b>On the Genetic Origins of Phenotypes in Genome-Wide Association Studies: The SNP Allocation For Estimating Heritability (SAFE-</b><b><i>h</i></b><sup><strong>2</strong></sup><b>) Tool to Explore Additive-only Allelic Effects or Additive and Non-Additive Allelic Effects</b><b>” (doi:</b> https://doi.org/10.1101/2023.08.28.555092<b>; </b>https://www.biorxiv.org/content/10.1101/2023.08.28.555092v6) for the full study and descriptions.<br><b>Citation: </b><i>Behrooz Darbani, Mogens Nicolaisen. </i>On the Genetic Origins of Phenotypes in Genome-Wide Association Studies: The SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>) Tool to Explore Additive-only Allelic Effects or Additive and Non-Additive Allelic Effects. doi: https://doi.org/10.1101/2023.08.28.555092<b>Contact: behroozdarbani@gmail.com, bds@rsyd.dk</b>
DOI: 10.17632/754m8ysnxh
title: Data for: A long-term, high-latitude record of Eocene hydrological change in the Greenland region

description: The following supplementary information includes additional figures (Figure S1-S3) and datasets. Dataset S1, which is uploaded separately, contains 8 tables: Table 1: Temperature and precipitation data obtained via HadCM3L Table 2: Plant-derived n-alkane distributions at ODP Site 913 during Eocene Table 3: Plant-derived di- and triterpenoids at ODP Site 913 during the Eocene Table 4: Hopanoid thermal maturity parameters at ODP Site 913 during the Eocene Table 5: GDGT distributions and temperature estimates at ODP Site 913 during the Eocene Table 6: Hydrogen isotopic composition of leaf wax biomarkers at ODP Site 913 during the Eocene Table 7: Apparent fractionations between leaf wax and source water compared between major taxanomic categories in modern plants Table 8: Estimates of modern-day precipitation δ2Hprecip for locations on the Greenland coast. Estimates are derived from the Online Isotopes in Precipitation Calculator (Bowen, 2016)
DOI: 10.17632/rc2pphrcjk
title: Dataset-covid-academic-performance

description: This work tested the hypothesis that the academic performance of students in a distance learning course in Biological Sciences (PBS-CEDERJ) decreased during the COVID-19 pandemic in disciplines with and without practical activities. Performance was quantified via students' grades in PBS-CEDERJ disciplines in pre-pandemic years (2018 and 2019) and during the pandemic (2020 and 2021) years
DOI: 10.17632/tnbzgfwhcs
title: Non-human Primates' Kinematic and Neuronal Recordings throughout a Reach-Grasp-Manipulate Task 

description: This data was collected from a behavioral task where two male rhesus non-human primates (Macaca mulatta, monkey X and monkey Y) were trained to
sit in a primate chair and visually-cued to reach towards, grasp, and manipulate one of four objects, i.e., a sphere (sphere), a perpendicularly mounted cylinder (mallet), a push-button (button), or a peripheral coaxial cylinder (cylinder). All studies were approved by the University of Rochester Institutional Animal Care and Use Committee. A description of the experimental paradigm and recording devices can be found in "Description_Experiment.pdf". 

Data collected in this repository was gathered from two experimental sessions with monkey X (session X0918 and session X1002) and two experimental session with monkey Y (session Y0210 and session Y0304). For each subject and recording session, data is stored in the MATLAB file "data_*****.mat", where "*****" indicates the specific combination of subject and session, i.e., it is X0918, X1002, Y0210, or Y0304). In each *.mat file, three MATLAB struct objects are stored: "kinematics", "neurons", and"lfp". lfp is available for sessions with monkey X only. A description of these struct objects is reported in "Description_Dataset.pdf".

This experiment was designed by Marc H. Schieber and collected by Adam G. Davidson, Andrew J. Law, and Marc. H. Schieber. 
M. Mollazadeh, V. Aggarwal, A. G. Davidson, A. J. Law, N. V. Thakor, and M. H. Schieber, "Spatiotemporal variation of multiple neurophysiological signals in the primary motor cortex during dexterous reach-to-grasp movements," J Neurosci, vol. 31, pp. 15531-15543, October 2011. DOI: https://doi.org/10.1523/JNEUROSCI.2999-11.2011
DOI: 10.6084/m9.figshare.28832186.v1
title: Heart rate and heart rate variability in athletic horses vary by age and activity level

description: These files is data of heart rate and heart rate variability (HRV) of athletic horses vary by age and activity level. And pages in each file is data of each horses.
DOI: 10.6084/m9.figshare.6030803.v1
title: Theoretical ribosomal protein mass fingerprint of Oryzias latipes

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Oryzias latipes.<br></i><br>
DOI: 10.17632/d232b5gpbh
title: Data for: Selective recovery of nickel, cobalt, manganese, and lithium from industrial waste lithium-ion batteries: A proposed leaching process and kinetic analysis

description: Supplementary data.
DOI: 10.6084/m9.figshare.11756847.v1
title: Development of Niobium Microalloyed Steel for Railway Wheel with Pearlitic Bainitic Microstructure

description: Heavy haul transportation (load over 30 tons/axle), as well as the axle load, has been more and more used in Brazil and worldwide. The stress generated in the wheel-rail contact with loads up to 30 tons/axle is around 760 MPa, which causes premature wear and cracks of conventional wheels (AAR (Association of American Railroads) class C). Microalloyed wheels are fundamental on heavy haul transport, whose main function is to combine high hardness, ductility, and yield strength of the material in order to prevent shelling. The main purpose of this research is to develop a new microalloyed wheel steel with niobium addition that meets all the requirements of the AAR class D material with mixed microstructure composed of pearlite and bainite. The 0.71C/0.020Nb steel developed in this study (Nb material) for railroad achieved the standards required for AAR class D in all mechanical properties, with fracture toughness higher than the usual vanadium microalloyed steel used in comparison. The Continuous Cooling Transformation (CCT) diagram showed the presence of bainite even at very low cooling rate, in the range between 0.3 - 2 °C/s. These cooling rates to form bainite are much lower than those observed in other steels with similar composition.
DOI: 10.6084/m9.figshare.28597499.v1
title: Datasets for scCO<sub>2</sub>/water/BS VE research files

description: Datasets for the supercritical CO<sub>2</sub>-water-BS research are available in these text data.