cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7582862
title: Spontaneous formation of tumorigenic hybrids between human omental adipose-derived stromal cells and endometrial cancer cells increased motility and heterogeneity of cancer cells

description: Recent reports indicate that mesenchymal stem cells (MSCs) can fuse with cancer cells to promote cancer progression. Omental adipose-derived stromal cells (O-ASCs) are similar to MSCs, which could be recruited to the stroma in endometrial cancer. The aim of our study was to investigate whether O-ASCs can fuse with endometrial cancer cells to influence cancer cells biological characteristics. We isolated O-ASCs from patients with endometrial cancer. O-ASCs and endometrial cancer cells were labeled with different fluorescent tags and directly co-cultured in an Opera high-throughput spinning-disk confocal microscopy system to observe the processes involved in the fusion, division and migration of hybrid cells. Immunofluorescence and high-throughput imaging analyzes were performed to evaluate proteins related to epithelial-mesenchymal transition (EMT).We found O-ASCs could spontaneously fuse with endometrial cancer cells, including cytomembrane and nuclear fusion. After fusion, endometrial cancer cells assume an elongated and fibroblast-like appearance that exhibit mesenchymal phenotypes. The hybrid cells proliferated through bipolar and multipolar divisions and exhibited more rapid migratory speeds than were observed in the parental cells (P &lt; 0.01), potentially because of their EMT-associated changes, including the down-regulation of E-cadherin and up-regulation of Vimentin. Our results collectively suggest that tumorigenic hybrids spontaneously formed between human O-ASCs and endometrial cancer cells, and that the resulting cells enhanced cancer mobility and heterogeneity by accelerated migration and undergoing multipolar divisions. These data provide a new avenue for investigating the roles of O-ASCs in endometrial cancer.
DOI: 10.6084/m9.figshare.14398491
title: Additional file 5 of First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

description: Additional file 5: Table S5. The detailed information of TCA cycle, oxidative phosphorylation, photosynthesis, ribosome succinylated proteins involved in Interaction network.
DOI: 10.6084/m9.figshare.14398479.v1
title: Additional file 1 of First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

description: Additional file 1: Table S1. The identified succinylated sites in paper mulberry leaves.
DOI: 10.6084/m9.figshare.14398488
title: Additional file 4 of First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

description: Additional file 4: Table S4. Identified succinylated proteins involved in the TCA cycle pathway.
DOI: 10.6084/m9.figshare.7582997.v1
title: Additional file 7: of PIWI-interacting RNA-36712 restrains breast cancer progression and chemoresistance by interaction with SEPW1 pseudogene SEPW1P RNA

description: Extended Data Sheet 1. (XLSX 72 kb)
DOI: 10.57745/ttsfz5
title: Table S7 - Differential expression.tab

description: :unav
DOI: 10.6084/m9.figshare.14398482.v1
title: Additional file 2 of First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

description: Additional file 2: Table S2. ident Classification in this study.
DOI: 10.6084/m9.figshare.7582862.v1
title: Spontaneous formation of tumorigenic hybrids between human omental adipose-derived stromal cells and endometrial cancer cells increased motility and heterogeneity of cancer cells.

description: Recent reports indicate that mesenchymal stem cells (MSCs) can fuse with cancer cells to promote cancer progression. Omental adipose-derived stromal cells (O-ASCs) are similar to MSCs, which could be recruited to the stroma in endometrial cancer. The aim of our study was to investigate whether O-ASCs can fuse with endometrial cancer cells to influence cancer cells biological characteristics We isolated O-ASCs from patients with endometrial cancer. O-ASCs and endometrial cancer cells were labeled with different fluorescent tags and directly co-cultured in an Opera high-throughput spinning-disk confocal microscopy system to observe the processes involved in the fusion, division and migration of hybrid cells. Immunofluorescence and high-throughput imaging analyses were performed to evaluate proteins related to epithelial-mesenchymal transition (EMT).We found O-ASCs could spontaneously fuse with endometrial cancer cells, including cytomembrane and nuclear fusion. After fusion, endometrial cancer cells assume an elongated and fibroblast-like appearance that exhibit mesenchymal phenotypes. The hybrid cells proliferated through bipolar and multipolar divisions and exhibited more rapid migratory speeds than were observed in the parental cells (P&lt;0.01), potentially because of their EMT-associated changes, including the down-regulation of E-cadherin and up-regulation of Vimentin. Our results collectively suggest that tumorigenic hybrids spontaneously formed between human O-ASCs and endometrial cancer cells, and that the resulting cells enhanced cancer mobility and heterogeneity by accelerated migration and undergoing multipolar divisions. These data provide a new avenue for investigating the roles of O-ASCs in endometrial cancer.
DOI: 10.6084/m9.figshare.20166215
title: Childhood beverage intake and risk of hypertension and hyperlipidaemia in young adults

description: An epidemiological analysis assessing beverage consumption and risk factors for cardiovascular disease was conducted. Participants were 9–16 years old at enrolment, completed food frequency questionnaires in 1996–2001 and self-reported outcomes in 2010–2014. Exclusion criteria included missing data on relevant variables and covariates, prevalent disease before 2005, and implausible/extreme weight or energy intake. Intakes of orange juice, apple/other fruit juice, sugar-sweetened beverages and diet soda were related to the risk of incident hypertension or hyperlipidaemia using Cox proportional hazards regression, adjusting for diet, energy intake, age, smoking, physical activity and body mass index. There were 9,043 participants with 618 cases of hypertension and 850 of hyperlipidaemia in 17 years of mean follow-up. Sugar-sweetened beverage intake but not fruit juice nor diet soda was associated with hypertension (hazard ratio (95% confidence interval): 1.16 (1.03, 1.31)) in males. This study can guide beverage consumption as it relates to early predictors of cardiovascular disease.
DOI: 10.6073/pasta/48de3ff094ea68b92d3c4bd51013d537
title: Time-lapse camera (phenocam) imagery of sensor network plots, 2017 - ongoing.

description: Images from time-lapse cameras were analyzed to track the greenness
 curves of 16 plots in the Sensor Network at Niwot Ridge. Images were
 taken every 30 minutes during daylight hours throughout the growing
 season. Cameras were angled to view 1m^2 vegetation plots located at
 each sensor node. Pixels in the portion of the image capturing the
 vegetation plot were used to calculate the green chromatic
 coordinate (GCC). The change in GCC over the growing season
 represents the growth and phenology of the plant communities
 captured.
DOI: 10.5285/a3fb75aa46db4711ab587f3fa3ca01fe
title: ESA High Resolution Land Cover Climate Change Initiative (High_Resolution_Land_Cover_cci): High Resolution Land Cover and Land Cover Change Maps in Africa (Eastern Sahel region) at 30m spatial resolution in GeoTiff format, 1990-2019, v1.2

description: This dataset contains high resolution (HR) land cover (LC) and land cover change (LCC) maps of a subregion of Africa, produced by the ESA High Resolution Land Cover (HRLC) Climate Change Initiative (CCI) project. It consists of the following products:

1) HRLC30: High Resolution Land Cover Maps at 30m spatial resolution for years 1990, 1995, 2000, 2005, 2010, 2015, 2019.
2) HRLCC30: High Resolution Land Cover Change Maps at 30m spatial resolution of yearly changes. A map every 5 years (1990-1995, 1995-2000, 2000-2005, 2005-2010, 2010-2015,2015-2019) is provided which reports (high priority) changed pixels and their year within the 5-years temporal interval.
3) Associated uncertainty products.

They cover the geographic range (3.5°N – 16.3°N; 27.0°E – 43.3°E).

The data are provided as both GeoTIFF tiles following the Sentinel-2 MGRS tiling scheme and as a GeoTiff format mosaic. These maps are also referred to as historical maps.
DOI: 10.57745/eo0irs
title: Table S3 - Heliaphen dynamic phenotypes.tab

description: :unav
DOI: 10.57745/uyrbgh
title: Table S5 - ROS wheel clusters.xlsx

description: :unav
DOI: 10.57745/slds71
title: Table S2 - Heliaphen static phenotypes.tab

description: :unav
DOI: 10.6084/m9.figshare.20678764
title: Additional file 1 of LncRNA MILIP links YBX1 to translational activation of Snai1 and promotes metastasis in clear cell renal cell carcinoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.21739142
title: Data and R code from Trophic strategies explain the ocean niches of small eukaryotic phytoplankton

description: A large fraction of marine primary production is performed by diverse small protists, and many of these phytoplankton are phagotrophic mixotrophs that vary widely in their capacity to consume bacterial prey. Prior analyses suggest that mixotrophic protists as a group vary in importance across ocean environments, but the mechanisms leading to broad functional diversity among mixotrophs, and the biogeochemical consequences of this, are less clear. Here we use isolates from seven major taxa to demonstrate a tradeoff between phototrophic performance (growth in the absence of prey) and phagotrophic performance (clearance rate when consuming <i>Prochlorococcus</i>). We then show that trophic strategy along the autotrophy-mixotrophy spectrum correlates strongly with global niche differences, across depths and across gradients of stratification and chlorophyll <i>a</i>. A model of competition shows that community shifts can be explained by greater fitness of faster-grazing mixotrophs when nutrients are scarce and light is plentiful. Our results illustrate how basic physiological constraints and principles of resource competition can organize complexity in the surface ocean ecosystem.
DOI: 10.6084/m9.figshare.20166215.v1
title: Childhood beverage intake and risk of hypertension and hyperlipidaemia in young adults

description: An epidemiological analysis assessing beverage consumption and risk factors for cardiovascular disease was conducted. Participants were 9–16 years old at enrolment, completed food frequency questionnaires in 1996–2001 and self-reported outcomes in 2010–2014. Exclusion criteria included missing data on relevant variables and covariates, prevalent disease before 2005, and implausible/extreme weight or energy intake. Intakes of orange juice, apple/other fruit juice, sugar-sweetened beverages and diet soda were related to the risk of incident hypertension or hyperlipidaemia using Cox proportional hazards regression, adjusting for diet, energy intake, age, smoking, physical activity and body mass index. There were 9,043 participants with 618 cases of hypertension and 850 of hyperlipidaemia in 17 years of mean follow-up. Sugar-sweetened beverage intake but not fruit juice nor diet soda was associated with hypertension (hazard ratio (95% confidence interval): 1.16 (1.03, 1.31)) in males. This study can guide beverage consumption as it relates to early predictors of cardiovascular disease.
DOI: 10.5285/f107a4ce186844bb8adf8cd1f2f6d552
title: ESA High Resolution Land Cover Climate Change Initiative (High_Resolution_Land_Cover_cci): High Resolution Land Cover Maps in Africa (Eastern Sahel region) at 10m spatial resolution for 2019 in Geotiff format, v1.2

description: This dataset contains high resolution (HR) land cover (LC) maps of a subregion of Africa, produced by the ESA High Resolution Land Cover (HRLC) Climate Change Initiative (CCI) project. This consists of the following products:

1) HRLC10: High Resolution Land Cover Maps at 10m spatial resolution for year 2019 (also referred to as static maps).
2) Associated uncertainty products.

They cover the geographic range (0.1°S – 18.1°N; 9.9°E – 43.3°E).

The data are provided as both GeoTIFF tiles following the Sentinel-2 MGRS tiling scheme and as a GeoTiff format mosaic. These maps are also referred to as static maps.
DOI: 10.57745/objw8d
title: Table S8 - ClueGO.tab

description: :unav
DOI: 10.57745/s7vfsg
title: Table S6 - Libraries.tab

description: :unav
DOI: 10.6084/m9.figshare.21739142.v1
title: Data and R code from Trophic strategies explain the ocean niches of small eukaryotic phytoplankton

description: A large fraction of marine primary production is performed by diverse small protists, and many of these phytoplankton are phagotrophic mixotrophs that vary widely in their capacity to consume bacterial prey. Prior analyses suggest that mixotrophic protists as a group vary in importance across ocean environments, but the mechanisms leading to broad functional diversity among mixotrophs, and the biogeochemical consequences of this, are less clear. Here we use isolates from seven major taxa to demonstrate a tradeoff between phototrophic performance (growth in the absence of prey) and phagotrophic performance (clearance rate when consuming <i>Prochlorococcus</i>). We then show that trophic strategy along the autotrophy-mixotrophy spectrum correlates strongly with global niche differences, across depths and across gradients of stratification and chlorophyll <i>a</i>. A model of competition shows that community shifts can be explained by greater fitness of faster-grazing mixotrophs when nutrients are scarce and light is plentiful. Our results illustrate how basic physiological constraints and principles of resource competition can organize complexity in the surface ocean ecosystem.
DOI: 10.6084/m9.figshare.14398543
title: Additional file 7 of Cross-talk between transcriptome, phytohormone and HD-ZIP gene family analysis illuminates the molecular mechanism underlying fruitlet abscission in sweet cherry (Prunus avium L)

description: Additional file 7: Table S6. GO classification of DEGs.
DOI: 10.5281/zenodo.10653821
title: Dataset for Attitudes of Ukrainian Refugees in Austria: Gender Roles, Democracy and Confidence in International Institutions

description: This dataset contains selected columns of the datasets from the UkrAiA survey restricted to the age of 18-59 (N=995) conducted in 2022 in csv and STATA dta file formats. The selected variables accompany the paper "Attitudes of Ukrainian Refugees in Austria: Gender Roles, Democracy, and Confidence in International Institutions". Due to data confidentiality reaons, some variables were grouped (reflected in the variable name: _aggr).

The research projects Ukrainian Arrivals in Austria (UkrAiA) aimed to shed light on Ukrainian displaced persons in Austria who left their homes due to the Russian war of aggression. The project sought to establish an evidence base for understanding the needs and resources of displaced individuals in the areas of integration, education, labour market, housing personal values and beliefs. It was conducted by researchers from the Vienna University of Economics and Business (WU) and the Austrian Academy of Sciences (OeAW) in Austria.

The UkrAiA survey was a rapid-response survey and provided the first reliable data on Ukrainian displaced persons in Austria. The field phase took place between April and June 2022, during the early stages of the war. Data collection was carried out using a multi-mode approach (PAPI and CAWI) following convenience sampling. The final sample consisted of N=1,094 Ukrainian individuals aged 18 and above. The survey design was approved by the ethics committee of the Vienna University of Economics and Business and follows the university's as well as international refugee studies' ethical guidelines. During the field phase of the survey financial support was provided by the City of Vienna and the Vienna Social Fund. Furthermore, the University of Applied Sciences Salzburg supported the CAWI design.

The files will be made available as soon as the accompanying paper is published.
DOI: 10.5281/zenodo.10653822
title: Dataset for Attitudes of Ukrainian Refugees in Austria: Gender Roles, Democracy and Confidence in International Institutions

description: This dataset contains selected columns of the datasets from the UkrAiA survey restricted to the age of 18-59 (N=995) conducted in 2022 in csv and STATA dta file formats. The selected variables accompany the paper "Attitudes of Ukrainian Refugees in Austria: Gender Roles, Democracy, and Confidence in International Institutions". Due to data confidentiality reaons, some variables were grouped (reflected in the variable name: _aggr).

The research projects Ukrainian Arrivals in Austria (UkrAiA) aimed to shed light on Ukrainian displaced persons in Austria who left their homes due to the Russian war of aggression. The project sought to establish an evidence base for understanding the needs and resources of displaced individuals in the areas of integration, education, labour market, housing personal values and beliefs. It was conducted by researchers from the Vienna University of Economics and Business (WU) and the Austrian Academy of Sciences (OeAW) in Austria.

The UkrAiA survey was a rapid-response survey and provided the first reliable data on Ukrainian displaced persons in Austria. The field phase took place between April and June 2022, during the early stages of the war. Data collection was carried out using a multi-mode approach (PAPI and CAWI) following convenience sampling. The final sample consisted of N=1,094 Ukrainian individuals aged 18 and above. The survey design was approved by the ethics committee of the Vienna University of Economics and Business and follows the university's as well as international refugee studies' ethical guidelines. During the field phase of the survey financial support was provided by the City of Vienna and the Vienna Social Fund. Furthermore, the University of Applied Sciences Salzburg supported the CAWI design.

The files will be made available as soon as the accompanying paper is published.
DOI: 10.6084/m9.figshare.14398543.v1
title: Additional file 7 of Cross-talk between transcriptome, phytohormone and HD-ZIP gene family analysis illuminates the molecular mechanism underlying fruitlet abscission in sweet cherry (Prunus avium L)

description: Additional file 7: Table S6. GO classification of DEGs.
DOI: 10.6084/m9.figshare.14398549
title: Additional file 9 of Cross-talk between transcriptome, phytohormone and HD-ZIP gene family analysis illuminates the molecular mechanism underlying fruitlet abscission in sweet cherry (Prunus avium L)

description: Additional file 9: Table S8. Validation of RNA-seq results via qRT-PCR.
DOI: 10.6084/m9.figshare.19106044
title: Additional file 1 of Down-regulation of PBK inhibits proliferation of human endometrial stromal cells in thin endometrium

description: Additional file 1: Supplementary Figure 1. Enrichment analysis of differentially expressed genes. Functional enrichment analysis of the up- and downregulated DEGs, including GO category cellular components (A), and molecular function (B). Red stand for upregulated genes, blue represent downregulated genes. Supplementary Figure 2. PPIs Network Construction. The PPIs network of DEGs was constructed by STRING and Cytoscape. (The red nodes stand for upregulated genes; the green nodes represent downregulated genes). Supplementary Figure 3. PPIs Network Cluster Analysis. (A) The top clusters 2–6 in MCODE analysis of DEGs (The red nodes stand for upregulated genes; the green nodes represent downregulated genes). Supplementary Figure 4. Effects of PBK knockdown on foxo and ERK signaling pathways. The protein level of FoxO1(A), p-ERK and t-ERK (B) in HESCs transfected with siPBK-2 after 24 h. The results were representative of three independent experiments. Supplementary Figure 5. Effects of TNFα and TGFβ1 on PBK expression. The mRNA and protein levels of PBK in HESCs stimulated with 20 ng/ml TNFα (A and B) or 10 ng/ml TGFβ1 (C and D) after 24 h or 48 h (n = 4). The results were representative of three independent experiments. All quantified data are presented as mean ± SEM; **P &lt; 0.01, ***P &lt; 0.001. Table S1. Clinical information of all patients and controls; Table S2. Sequences of primers; Table S3. Antibodies used for immunohistochemistry (IHC) and western blotting (WB); Table S4. Cluster2–7 enrichment analysis.
DOI: 10.6084/m9.figshare.20678814
title: Additional file 2 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 2.
DOI: 10.6084/m9.figshare.20678814.v1
title: Additional file 2 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 2.
DOI: 10.6084/m9.figshare.20678820.v1
title: Additional file 3 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 3.
DOI: 10.6084/m9.figshare.20678823
title: Additional file 4 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 4.
DOI: 10.6084/m9.figshare.20678823.v1
title: Additional file 4 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 4.
DOI: 10.6084/m9.figshare.20678820
title: Additional file 3 of Hsa-miR-1248 suppressed the proliferation, invasion and migration of colorectal cancer cells via inhibiting PSMD10

description: Additional file 3.
DOI: 10.6084/m9.figshare.19106230
title: Additional file 3 of Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease

description: Additional file 3. HAM markers derived from Srinivasan et. al. [64]
DOI: 10.15156/bio/sh1264122.09fu
title: SH1264122.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.