cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7335242.v2
title: Human MNI Adult Templates

description: Data from http://nist.mni.mcgill.ca/:<br>Copyright (C) 1993-2009 Louis Collins, McConnell BrainImaging Centre, Montreal Neurological Institute, McGill University.Permission to use, copy, modify, and distribute this software andits documentation for any purpose and without fee is hereby granted,provided that the above copyright notice appear in all copies. Theauthors and McGill University make no representations about thesuitability of this software for any purpose. It is provided "asis" without express or implied warranty. The authors are notresponsible for any data loss, equipment damage, property loss, orinjury to subjects or patients resulting from the use or misuse ofthis software package. <br>Copyright (C) 2016-2018 Yiming Xiao, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.Permission to use, copy, modify, and distribute this software andits documentation for any purpose and without fee is hereby granted,provided that the above copyright notice appear in all copies. Theauthors and McGill University make no representations about thesuitability of this software for any purpose. It is provided "asis" without express or implied warranty. The authors are notresponsible for any data loss, equipment damage, property loss, orinjury to subjects or patients resulting from the use or misuse ofthis software package. <br><br>See licenses for more information.<br>
DOI: 10.6084/m9.figshare.7335209
title: Estimation in a semiparametric panel data model with nonstationarity

description: In this paper, we consider a partially linear panel data model with nonstationarity and certain cross-sectional dependence. Accounting for the explosive feature of the nonstationary time series, we particularly employ Hermite orthogonal functions in this study. Under a general spatial error dependence structure, we then establish some consistent closed-form estimates for both the unknown parameters and the unknown functions for the cases where <i>N</i> and <i>T</i> go jointly to infinity. Rates of convergence and asymptotic normalities are established for the proposed estimators. Both the finite sample performance and the empirical applications show that the proposed estimation methods work well.
DOI: 10.7284/104667
title: Gravimeter data collected during research cruise RR1112 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335209.v1
title: Estimation in a semiparametric panel data model with nonstationarity

description: In this paper, we consider a partially linear panel data model with nonstationarity and certain cross-sectional dependence. Accounting for the explosive feature of the nonstationary time series, we particularly employ Hermite orthogonal functions in this study. Under a general spatial error dependence structure, we then establish some consistent closed-form estimates for both the unknown parameters and the unknown functions for the cases where <i>N</i> and <i>T</i> go jointly to infinity. Rates of convergence and asymptotic normalities are established for the proposed estimators. Both the finite sample performance and the empirical applications show that the proposed estimation methods work well.
DOI: 10.7284/104666
title: Gyrocompass data collected during research cruise RR1112 using a iXSea Hydrins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104670
title: Gyrocompass data collected during research cruise RR1112 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103763
title: Meteorological Station data collected during research cruise RR1112 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335182
title: Infestation potential of <i>Dryocosmus kuriphilus</i> Yasumatsu, 1951 (Hymenoptera: Cynipidae) in different natural populations of <i>Castanea sativa</i> Miller: an experimental <i>ex situ</i> test

description: The Asian chestnut gall wasp was accidentally introduced in Italy in 2002 and spread across Europe in the following years, becoming a serious threat for chestnut cultivations and rural economies of many countries. Exploring the variation in susceptibility of the host genetic resources is crucial to face the spreading of this pest. We used an experimental approach for testing the differential susceptibility within and between populations of European chestnut. For doing this, we compared both the infestation level and the rate of immune individuals in trees from populations of Spain, Italy, and Greece. We found that the level of infestation is not significantly different in the different provenances but that a higher rate of immune trees occur in Greece. Our results suggest that two different contingents of trees compose Greek populations: one major group of trees with the same susceptibility as the other populations and a second minor group of trees resistant to gall wasp infestation. Our data lay the basis for improving the currently adopted measures to mitigate gall wasp impacts.
DOI: 10.6084/m9.figshare.7335182.v1
title: Infestation potential of <i>Dryocosmus kuriphilus</i> Yasumatsu, 1951 (Hymenoptera: Cynipidae) in different natural populations of <i>Castanea sativa</i> Miller: an experimental <i>ex situ</i> test

description: The Asian chestnut gall wasp was accidentally introduced in Italy in 2002 and spread across Europe in the following years, becoming a serious threat for chestnut cultivations and rural economies of many countries. Exploring the variation in susceptibility of the host genetic resources is crucial to face the spreading of this pest. We used an experimental approach for testing the differential susceptibility within and between populations of European chestnut. For doing this, we compared both the infestation level and the rate of immune individuals in trees from populations of Spain, Italy, and Greece. We found that the level of infestation is not significantly different in the different provenances but that a higher rate of immune trees occur in Greece. Our results suggest that two different contingents of trees compose Greek populations: one major group of trees with the same susceptibility as the other populations and a second minor group of trees resistant to gall wasp infestation. Our data lay the basis for improving the currently adopted measures to mitigate gall wasp impacts.
DOI: 10.7284/103766
title: Multibeam Echosounder data collected during research cruise RR1112 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103767
title: Singlebeam Echosounder data collected during research cruise RR1112 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103772
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1114 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335155
title: Biotechnology in ciliates: an overview

description: Since their description and classification in the 19th century, ciliates have played an important role in science, leading to several fundamental discoveries in the areas of cellular and molecular biology. During the last decades, with the emergence of biotechnology, many new developments are also coming to light. In this review, we describe a range of applications in which ciliates have found a niche, ranging from the production of a vast array of proteins, lipids, metabolites, and antigens to their use in toxicity screening, biocontrol, bioremediation, and biotransformation of substrates into more valuable products. We highlight the benefits and drawbacks of their use in biotechnology, the latest developments in large-scale culture and state-of-the-art molecular-genetic techniques, as well as the estimations on the exploitation areas with better potential, i.e., the production of complex membrane proteins, and those less interesting or with less chances of success.
DOI: 10.7284/103771
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1114 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335155.v1
title: Biotechnology in ciliates: an overview

description: Since their description and classification in the 19th century, ciliates have played an important role in science, leading to several fundamental discoveries in the areas of cellular and molecular biology. During the last decades, with the emergence of biotechnology, many new developments are also coming to light. In this review, we describe a range of applications in which ciliates have found a niche, ranging from the production of a vast array of proteins, lipids, metabolites, and antigens to their use in toxicity screening, biocontrol, bioremediation, and biotransformation of substrates into more valuable products. We highlight the benefits and drawbacks of their use in biotechnology, the latest developments in large-scale culture and state-of-the-art molecular-genetic techniques, as well as the estimations on the exploitation areas with better potential, i.e., the production of complex membrane proteins, and those less interesting or with less chances of success.
DOI: 10.7284/110554
title: Expendable Probe data collected during research cruise RR1114 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103769
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1114 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103775
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1114 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104672
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1114 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104675
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1114 using a MX Marine MX421 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335071
title: Cohort 2 Dataset

description: 1255 samples from Cohort 1 and 1846 biopsy samples from Cohort 2 were sequenced for V5/V6 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM System and analyzed in QIIME 1.9.1.
DOI: 10.7284/104676
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1114 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7335071.v1
title: Cohort 2 Dataset

description: 1255 samples from Cohort 1 and 1846 biopsy samples from Cohort 2 were sequenced for V5/V6 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM System and analyzed in QIIME 1.9.1.
DOI: 10.6084/m9.figshare.7335068
title: Cohort 1 Dataset

description: 1255 samples from Cohort 1 and 1846 biopsy samples from Cohort 2 were sequenced for V5/V6 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM System and analyzed in QIIME 1.9.1.<br>
DOI: 10.7284/104674
title: Gravimeter data collected during research cruise RR1114 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104673
title: Gyrocompass data collected during research cruise RR1114 using a iXSea Hydrins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104677
title: Gyrocompass data collected during research cruise RR1114 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103770
title: Meteorological Station data collected during research cruise RR1114 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103773
title: Multibeam Echosounder data collected during research cruise RR1114 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7334858
title: Exploring relationships of spring green-up to moisture and temperature across Wyoming, U.S.A

description: Vegetation green-up signals the timing of available nutritious plants and shrubs providing high-quality forage for ungulates. In this study, we characterized spatial and temporal patterns of spring phenology and explored how they were related to preceding temperature and moisture conditions. We tested correlations between late winter weather and indicators of the onset and the length of the spring growing period with 250-m resolution time-series satellite data (2001 – 2013) for Wyoming, USA. In western Wyoming mountains, drier and warmer conditions during late winter were associated with earlier spring green-up onset of growth in forests, shrubs, and grasses. In the northeast mountains, onset of spring correlated positively with preceding warmer temperatures, but not with precipitation. In most basin and plains shrublands and grasslands, spring onset was not correlated with temperature, although earlier onset of spring was correlated with drier conditions in 25% of shrub/scrub areas. Results about the length of spring were less definitive, with warmer temperatures related to longer green-up time for 12–30% of the land cover in western mountains but to shorter green-up time periods for 10–20% of the grasses and shrubs in basins and plains. Complex phenological patterns are likely to affect ungulate foraging behaviour on a local scale.
DOI: 10.7284/103774
title: Singlebeam Echosounder data collected during research cruise RR1114 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7334858.v2
title: Exploring relationships of spring green-up to moisture and temperature across Wyoming, U.S.A

description: Vegetation green-up signals the timing of available nutritious plants and shrubs providing high-quality forage for ungulates. In this study, we characterized spatial and temporal patterns of spring phenology and explored how they were related to preceding temperature and moisture conditions. We tested correlations between late winter weather and indicators of the onset and the length of the spring growing period with 250-m resolution time-series satellite data (2001 – 2013) for Wyoming, USA. In western Wyoming mountains, drier and warmer conditions during late winter were associated with earlier spring green-up onset of growth in forests, shrubs, and grasses. In the northeast mountains, onset of spring correlated positively with preceding warmer temperatures, but not with precipitation. In most basin and plains shrublands and grasslands, spring onset was not correlated with temperature, although earlier onset of spring was correlated with drier conditions in 25% of shrub/scrub areas. Results about the length of spring were less definitive, with warmer temperatures related to longer green-up time for 12–30% of the land cover in western mountains but to shorter green-up time periods for 10–20% of the grasses and shrubs in basins and plains. Complex phenological patterns are likely to affect ungulate foraging behaviour on a local scale.
DOI: 10.7284/103781
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1115 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103780
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR1115 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104685
title: Expendable Probe data collected during research cruise RR1115 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7334804
title: EntSoc 2018

description: Ent Soc talk + code<br>
DOI: 10.6084/m9.figshare.7334804.v1
title: EntSoc 2018

description: Ent Soc talk + code<br>
DOI: 10.7284/103776
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1115 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103784
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1115 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7334723
title: Bacterial microbiota composition of fermented fruit and vegetable juices (<i>jiaosu</i>) analyzed by single-molecule, real-time (SMRT) sequencing

description: Commercially manufactured ‘jiaosu’ (fermented fruit and vegetable juices) have gained popularity in Asia recently. Like other fermented products, they have a high microbial diversity and richness. However, no published study has yet described their microbiota composition. Thus, this work aimed to obtain the full-length 16S rRNA profiles of jiaosu using the PacBio single-molecule, real-time sequencing technology. We described the bacterial microbiota of three jiaosu products purchased from Taiwan and Japan. Bacterial sequences from all three samples distributed across seven different phyla, mainly Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes. Forty-three genera were identified (e.g. <i>Ochrobactrum, Lactobacillus, Mycobacterium</i>, and <i>Acinetobacter</i>). Fifty-five species were identified (e.g. <i>Ochrobactrum lupini, Mycobacterium abscessus, Acinetobacter johnsonii, Lactobacillus paracasei, Lactobacillus delbrueckii</i>, and <i>Petrobacter succinatimandens</i>). No pathogen sequences were identified within the entire dataset. Moreover, only a low proportion of sequences represented common skin microflora and the food hygiene indicator <i>Escherichia</i>/<i>Shigella</i>, suggesting overall acceptable sanitary conditions during the manufacturing process.
DOI: 10.7284/104679
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1115 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7334723.v1
title: Bacterial microbiota composition of fermented fruit and vegetable juices (<i>jiaosu</i>) analyzed by single-molecule, real-time (SMRT) sequencing

description: Commercially manufactured ‘jiaosu’ (fermented fruit and vegetable juices) have gained popularity in Asia recently. Like other fermented products, they have a high microbial diversity and richness. However, no published study has yet described their microbiota composition. Thus, this work aimed to obtain the full-length 16S rRNA profiles of jiaosu using the PacBio single-molecule, real-time sequencing technology. We described the bacterial microbiota of three jiaosu products purchased from Taiwan and Japan. Bacterial sequences from all three samples distributed across seven different phyla, mainly Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes. Forty-three genera were identified (e.g. <i>Ochrobactrum, Lactobacillus, Mycobacterium</i>, and <i>Acinetobacter</i>). Fifty-five species were identified (e.g. <i>Ochrobactrum lupini, Mycobacterium abscessus, Acinetobacter johnsonii, Lactobacillus paracasei, Lactobacillus delbrueckii</i>, and <i>Petrobacter succinatimandens</i>). No pathogen sequences were identified within the entire dataset. Moreover, only a low proportion of sequences represented common skin microflora and the food hygiene indicator <i>Escherichia</i>/<i>Shigella</i>, suggesting overall acceptable sanitary conditions during the manufacturing process.
DOI: 10.7284/104682
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1115 using a MX Marine MX421 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104683
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1115 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104681
title: Gravimeter data collected during research cruise RR1115 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition