cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14152883
title: R scripts and data from article: Frog community composition-environment relationships vary over time: are snapshot studies of metacommunity dynamics useful?

description: All R scripts and data used to run the analysis of the manuscript "Frog community composition-environment relationships vary over time: are snapshot studies of metacommunity dynamics useful?<br>
DOI: 10.48370/ofd/sxvcb2
title: Przygiełka biała (Rhynchospora alba (L.) Vahl), 8021

description: Herbarium
DOI: 10.6084/m9.figshare.14152886
title: Quercetin and DNA/RNA adsorbed on Graphene

description: This dataset contains all the inputs to calculate the optimised geometry, band structure, and absorbance of nucleobases and flavonoids adsorbed on graphene.
DOI: 10.6084/m9.figshare.14152868
title: Data Isolasi Jamur, dan Bakteri Endofit Pada Daun Buas-buas

description: The result data of Fungi and Bacteria Endofit of Buas-buas leave
DOI: 10.6084/m9.figshare.14152868.v1
title: Data Isolasi Jamur, dan Bakteri Endofit Pada Daun Buas-buas

description: The result data of Fungi and Bacteria Endofit of Buas-buas leave
DOI: 10.5281/zenodo.4575681
title: Gut Microbiota in IGAN : A Malaysian Perspective

description: Raw data and report file are produced by the NGS sequencing company *subjects with the 1st alphabets d and p - are patients with disease, subjects the 1st alphabet h - is the control cohort
DOI: 10.5281/zenodo.4575680
title: Gut Microbiota in IGAN : A Malaysian Perspective

description: Raw data and report file are produced by the NGS sequencing company *subjects with the 1st alphabets d and p - are patients with disease, subjects the 1st alphabet h - is the control cohort
DOI: 10.34740/kaggle/dsv/45582
title: MyAnimeList Dataset
DOI: 10.6084/m9.figshare.14152973
title: Mass spectrometry raw data_H3K64me3_ARV lab.zip

description: The trimethylation mark at histone 3 lysine 64 was identified by mass spectrometry. The peptide matching to the histone lysine 64 was identified. The raw data related to the mass spectrometry is uploaded.
DOI: 10.6084/m9.figshare.14152973.v2
title: Mass spectrometry raw data_H3K64me3_ARV lab.zip

description: The trimethylation mark at histone 3 lysine 64 was identified by mass spectrometry. The peptide matching to the histone lysine 64 was identified. The raw data related to the mass spectrometry is uploaded.
DOI: 10.6084/m9.figshare.14152973.v1
title: Mass spectrometry raw data_H3K64me3_ARV lab.zip

description: The trimethylation mark at histone 3 lysine 64 was identified by mass spectrometry. The peptide matching to the histone lysine 64 was identified. The raw data related to the mass spectrometry is uploaded.
DOI: 10.21957/k2hd-ep03
title: forecast with ECMWF IFS for the EUREC4A period (25km), no shallow convection momentum transport
DOI: 10.21957/1bm6-m034
title: control forecast experiment with ECMWF IFS for the EUREC4A period (25km)
DOI: 10.6084/m9.figshare.14152991
title: Supplementary Material for: Integrated RNA Sequencing Reveals Epigenetic Impacts of Diesel Particulate Matter Exposure in Human Cerebral Organoids

description: Autism spectrum disorder (ASD) manifests early in childhood. While genetic variants increase risk for ASD, a growing body of literature has established that in utero chemical exposures also contribute to ASD risk. These chemicals include air-based pollutants like diesel particulate matter (DPM). A combination of single-cell and direct transcriptomics of DPM-exposed human-induced pluripotent stem cell-derived cerebral organoids revealed toxicogenomic effects of DPM exposure during fetal brain development. Direct transcriptomics, sequencing RNA bases via Nanopore, revealed that cerebral organoids contain extensive RNA modifications, with DPM-altering cytosine methylation in oxidative mitochondrial transcripts expressed in outer radial glia cells. Single-cell transcriptomics further confirmed an oxidative phosphorylation change in cell groups such as outer radial glia upon DPM exposure. This approach highlights how DPM exposure perturbs normal mitochondrial function and cellular respiration during early brain development, which may contribute to developmental disorders like ASD by altering neurodevelopment.
DOI: 10.6084/m9.figshare.14152991.v1
title: Supplementary Material for: Integrated RNA Sequencing Reveals Epigenetic Impacts of Diesel Particulate Matter Exposure in Human Cerebral Organoids

description: Autism spectrum disorder (ASD) manifests early in childhood. While genetic variants increase risk for ASD, a growing body of literature has established that in utero chemical exposures also contribute to ASD risk. These chemicals include air-based pollutants like diesel particulate matter (DPM). A combination of single-cell and direct transcriptomics of DPM-exposed human-induced pluripotent stem cell-derived cerebral organoids revealed toxicogenomic effects of DPM exposure during fetal brain development. Direct transcriptomics, sequencing RNA bases via Nanopore, revealed that cerebral organoids contain extensive RNA modifications, with DPM-altering cytosine methylation in oxidative mitochondrial transcripts expressed in outer radial glia cells. Single-cell transcriptomics further confirmed an oxidative phosphorylation change in cell groups such as outer radial glia upon DPM exposure. This approach highlights how DPM exposure perturbs normal mitochondrial function and cellular respiration during early brain development, which may contribute to developmental disorders like ASD by altering neurodevelopment.
DOI: 10.6084/m9.figshare.14152946
title: Supplementary Material for: Decreasing Attacks and Improving Quality of Life through a Systematic Management Program for Patients with Hereditary Angioedema

description: <b><i>Introduction:</i></b> Prevention of attacks is a major goal in management of patients with hereditary angioedema (HAE). We aimed to investigate the effects of a systematic intervention for HAE patients. <b><i>Methods:</i></b> Thirty-three patients with HAE with C1-inhibitor deficiency, belonging to a single family, participated in a management program coordinated by an allergist/immunologist. Angioedema attacks before intervention were ascertained by interviews and emergency room charts and recorded prospectively by patients or caregivers after enrollment. Mean number of attacks/month was compared at 12 months preintervention and 8 and 14 months within intervention. Patient-reported outcome instruments were used to assess quality of life, including HAE Quality of Life (HAE-QoL) questionnaire, psychological conditions, and work impairment, at baseline and 8 and 14 months within intervention. Data were stored in REDCap platform and analyzed by adjusted Bayesian models of double Poisson regression. <b><i>Results:</i></b> Mean number of attacks/month significantly decreased (95% credible interval [CrI] excluding 0) from 1.15 preintervention to 0.25 and 0.23, 8 and 14 months within intervention, with mean decreases of −0.89 (95% CrI: −1.21 to −0.58) and −0.92 (95% CrI: −1.22 to −0.60), respectively. HAE-QoL scores showed mean total increases of 15.2 (95% CrI: 1.23–29.77) and 26 (95% CrI: 14.56–39.02) at 8 and 14 months within the study, as compared to baseline, revealing marked improvement in quality of life. Significant increase in role-emotional and reduction of depression, stress, and anxiety were observed at 14 months. <b><i>Conclusion:</i></b> A systematic approach integrating HAE-specific care with effective handling of psychological issues decreased the number of attacks and improved quality of life, targets for best practice in HAE.
DOI: 10.6084/m9.figshare.14152946.v1
title: Supplementary Material for: Decreasing Attacks and Improving Quality of Life through a Systematic Management Program for Patients with Hereditary Angioedema

description: <b><i>Introduction:</i></b> Prevention of attacks is a major goal in management of patients with hereditary angioedema (HAE). We aimed to investigate the effects of a systematic intervention for HAE patients. <b><i>Methods:</i></b> Thirty-three patients with HAE with C1-inhibitor deficiency, belonging to a single family, participated in a management program coordinated by an allergist/immunologist. Angioedema attacks before intervention were ascertained by interviews and emergency room charts and recorded prospectively by patients or caregivers after enrollment. Mean number of attacks/month was compared at 12 months preintervention and 8 and 14 months within intervention. Patient-reported outcome instruments were used to assess quality of life, including HAE Quality of Life (HAE-QoL) questionnaire, psychological conditions, and work impairment, at baseline and 8 and 14 months within intervention. Data were stored in REDCap platform and analyzed by adjusted Bayesian models of double Poisson regression. <b><i>Results:</i></b> Mean number of attacks/month significantly decreased (95% credible interval [CrI] excluding 0) from 1.15 preintervention to 0.25 and 0.23, 8 and 14 months within intervention, with mean decreases of −0.89 (95% CrI: −1.21 to −0.58) and −0.92 (95% CrI: −1.22 to −0.60), respectively. HAE-QoL scores showed mean total increases of 15.2 (95% CrI: 1.23–29.77) and 26 (95% CrI: 14.56–39.02) at 8 and 14 months within the study, as compared to baseline, revealing marked improvement in quality of life. Significant increase in role-emotional and reduction of depression, stress, and anxiety were observed at 14 months. <b><i>Conclusion:</i></b> A systematic approach integrating HAE-specific care with effective handling of psychological issues decreased the number of attacks and improved quality of life, targets for best practice in HAE.
DOI: 10.6084/m9.figshare.14152934
title: The relationship between Menopause and Metabolic Syndrome: Experimental and Bioinformatics Analysis

description: GSE2208 data sets analysis using GEO2R. (P‑value &lt;0.05 and |logFC|≥0.585 ). Data of GSE2208 are based on the platform of Affymetrix GeneChip Human U133A microarrays and obtained from gene expression profile of ~14,500 genes in nine premenopausal (50.0 ± 3.1 years old) and 10 postmenopausal (52.0 ± 1.7 years old) healthy women. The ID column represents microarray probe identifiers.<br>
DOI: 10.6084/m9.figshare.14152934.v1
title: The relationship between Menopause and Metabolic Syndrome: Experimental and Bioinformatics Analysis

description: GSE2208 data sets analysis using GEO2R. (P‑value &lt;0.05 and |logFC|≥0.585 ). Data of GSE2208 are based on the platform of Affymetrix GeneChip Human U133A microarrays and obtained from gene expression profile of ~14,500 genes in nine premenopausal (50.0 ± 3.1 years old) and 10 postmenopausal (52.0 ± 1.7 years old) healthy women. The ID column represents microarray probe identifiers.<br>
DOI: 10.5281/zenodo.4574446
title: LT-Brazil: A database of leaf traits across biomes and vegetation types in Brazil

description: The LT-Brazil data set contains information of biome, vegetation, taxonomic data, geographical coordinates, climatic parameters, as well as soil properties from native woody species across the Brazilian territory, encompassing 3559, 1220, 778, and 778 observations of leaf mass per area, leaf N and P concentration per unit mass, and leaf N:P ratio, respectively. We compiled data from 227 sites under native vegetation distributed in all biomes (<em>i.e.</em>, Amazônia, Caatinga, Cerrado, Mata Atlântica, Pampa, and Pantanal) found in Brazil. Our compilation was focused on native woody plants (<em>i.e.</em>, trees, shrubs, and lianas), excluding monocots, palm trees, herbs, and hemiparasitic plants. Thus, 110, 479, and 1407 botanical families, genera, and species were included. Unidentified or mixed species were also considered when met our eligibility criteria.
description: This work was funded by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP; grant #2011/50384-4, #2013/09800-0, #2015/18790-3, and #2015/50488-5). The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
DOI: 10.25345/c5022z
title: MassIVE MSV000086982 - Microvascular endothelial cells
title: Analysis of human microvascular endothelial cells derived from adipose tissue
DOI: 10.15468/h88xew
title: Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vanderduys, Eric, Hoskin, Conrad J., Kutt, Alex S., Wright, Justin M., Zozaya, Stephen M. (2020): Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia. Zootaxa 4877 (2): 291-310, DOI: https://doi.org/10.11646/zootaxa.4877.2.4
DOI: 10.15468/x2s3zt
title: A new diurnal gecko in the genus Gonatodes (Squamata: Sphaerodactylidae) from the foothills of the Serranía de San Lucas, Norosí-Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carvajal-Cogollo, Juan E., Eguis-Avendaño, Jorge A., Meza-Joya, Fabio Leonardo (2020): A new diurnal gecko in the genus Gonatodes (Squamata: Sphaerodactylidae) from the foothills of the Serranía de San Lucas, Norosí-Colombia. Zootaxa 4877 (2): 345-360, DOI: https://doi.org/10.11646/zootaxa.4877.2.7
DOI: 10.5281/zenodo.4576389
title: Сведения о вакантных рабочих местах для инвалидов и лиц с ограниченными возможностями, предоставленные работодателями в Службу занятости населения города Москвы

description: Сведения о вакантных рабочих местах для инвалидов и лиц с ограниченными возможностями, предоставленные работодателями в Службу занятости населения города Москвы
DOI: 10.5281/zenodo.4576388
title: Сведения о вакантных рабочих местах для инвалидов и лиц с ограниченными возможностями, предоставленные работодателями в Службу занятости населения города Москвы

description: Сведения о вакантных рабочих местах для инвалидов и лиц с ограниченными возможностями, предоставленные работодателями в Службу занятости населения города Москвы
DOI: 10.7303/syn24988763
title: syn24988763
DOI: 10.15784/601254
title: Automated c-axis stage images of WDC-06A 420 vertical thin section from WAIS Divide, Antarctica

description: This dataset comprises new photographs and measurements of a WAIS Divide vertical thin section, WDC-06A 420 VTS, previously prepared and measured by J. Fitzpatrick, D. E. Voigt, and R. Alley (dataset DOI: 10.7265/N5W093VM; http://www.usap-dc.org/view/dataset/609605) as part of a larger study of the WAIS Divide ice core (Fitzpatrick, J. et al, 2014, Physical properties of the WAIS Divide ice core, Journal of Glaciology, 60, 224, 1181-1198. (doi:10.3189/2014JoG14J100). These images were taken as a design test of our new automated lightweight c-axis analyzer, dubbed ALPACA, which implements the ice fabric analysis functionality of the Wilen system used by Fitzpatrick et al. in an easily- portable, field-deployable form factor.
DOI: 10.25345/c5vb94
title: MassIVE MSV000086983 - GNPS MN SDU36 extract 20210303
title: SDU36, identified by Myxococcus sp., was isolated from sediment of the Jingpo Lake in Heilongjiang province, P.R. China
DOI: 10.6073/pasta/f71d99dbcd233aeff6ae251f890d71f9
title: Microbial Community Composition in Lakes - Taxonomic/Ecological characteristics of the sample at North Temperate Lakes LTER 2000 - 2007

description: Microbial community composition is inferred by a combination of automated ribosomal intergenic spacer analysis (ARISA) and PCR-generated clone library analysis. Clone libraries include both the 16S rRNA gene and the 16S-23S ribosomal intergenic spacer fragment. Phylogenetic assignments for individual ARISA fragments are obtained by comparing the ARISA fragment length from each clone to all of the profiles stored in our database. We have analyzed over 3900 clones obtained from 41 lakes that represent the range of trophic types found in temperate landscapes. Querying by a combination of taxonomic and ecological characteristics of the sample allows the user to retrieve sample information [sample IDs, sample dates, lake information (region, type, size, depth) and physical/chemical data (water temperature, clarity, pH, DOC, SUVA, TN, TP, nitrates/nitrites)] and clone information [clone IDs, sequence data, and characteristics of the sequence (length, chimera status, accession number, taxonomic affiliation)]. The data can be filtered by ecological characteristics of the sample [lake name, sample date, lake information (region, type, size, depth)] and taxonomic characteristics of the community members [clone ID, ARISA fragment length (raw or binned), and/or taxonomic characteristics (Phylum and Phylum-Class)]. The output can include links to individual sample records, which contain links to the taxonomic composition of the sample inferred by dynamically matching clones to ARISA fragments in the individual sample. The output can also include links to clone records directly (though this creates a very large number of lines in the output and is not recommended). Project ID's 30 Lakes - Survey of 30 lakes in northern and southern Wisconsin. June, August and October, 2002. See http://microbes.limnology.wisc.edu/lakes30.html. Lake Characteristics. CB0000 - Time series monitoring microbial community composition in Crystal Bog. 2000-2002. CBX_02 - Food web manipulation experiment in Crystal Bog. Summer, 2002.
DOI: 10.22008/promice/data/mass_balance/input_output/perimeter
title: Programme for monitoring of the Greenland ice sheet (PROMICE): Ice sheet mass balance (1995-2015)
DOI: 10.7277/fh6g-ad10
title: Development of a Performance-Based Seismic Design Philosophy for Mid-Rise Woodframe Construction (NEES-2010-0895)

description: &lt;p&gt;&lt;strong&gt;Title&lt;/strong&gt;: Development of a Performance-Based Seismic Design Philosophy for Mid-Rise Woodframe Construction (Capstone test) (NEES-2010-0895)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2012&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;A series of five shake table tests was conducted on a full-scale mid-rise building at Japan&#39;s E-Defense as the last task within the NEESWood Project. Test Day 1 consisted of the 7-story mixed use building with a moderate and then a design-level earthquake intensity used as input motion. Test Day 2 consisted of the same input motions with the SMF locked down to enable only participation of the six-story woodframe building. The last day, Test Day 3 had only a single test at MCE seismic intensity. All ground motions were scaled per ASCE 7-05 for Los Angeles, CA. Data sets include approximately 100 sensors ranging from accelerometers, to strain gauges, to string potentiometers. In addition, 50 optical tracking markers provided 3-D movement on three sides of the building with an approximate accuracy of +/- 1mm.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=0529903&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;John Van de Lindt&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;June 30, 2009 - July 14, 2009&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;Colorado State University, Fort Collins, CO, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;Colorado State University, Fort Collins, CO, United States,&lt;br /&gt; Hyogo Earthquake Engineering Research Center (E-Defense), Miki, Japan&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NSF - 0529903&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;e-defense, Japan, full scale, shake table testing, light frame wood building&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: -&lt;/strong&gt;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.15129/da7241c1-3e81-4a83-8d80-2a9a0233a99e
title: Data for: "Scheduling space-to-ground optical communication under cloud cover uncertainty"

description: The data set contains a collection of problem instances for scheduling Satellite Quantum Key Distribution (SatQKD). The objective of the problem is to schedule data transfers from a satellite orbiting Earth to a network of ground stations. During a data transfer, the spacecraft sends cryptographic keys which will be then used by the receiver to secure internal communication in the network. The keys should be distributed according to the ground station importance. Problem instances were generated using information combined from different sources: the orbital mechanics and atmospheric models, official weather forecasts and weather observations, time series models, and statistic procedures developed by the authors of the data set. The data set is available on the Open Data Commons Open Database License (ODbL). Data embargo until 31/03/21
DOI: 10.5281/zenodo.4576466
title: Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Predictions

description: Main output table containing all processed pVOG pairs, their predicted label (0 for negative 1 for positive), prediction probability, available annotations (raw and processed) and calculated features values. This serves as supplementary/additional data, due to its size. Standard worksheet viewing applications (MS Excel, LibreOfiice Calc) will probably fail. Source code used to produce this is available on https://git.science.uu.nl/papanikos/pvogs_function
DOI: 10.5281/zenodo.4576465
title: Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Predictions

description: Main output table containing all processed pVOG pairs, their predicted label (0 for negative 1 for positive), prediction probability, available annotations (raw and processed) and calculated features values. This serves as supplementary/additional data, due to its size. Standard worksheet viewing applications (MS Excel, LibreOfiice Calc) will probably fail. Source code used to produce this is available on https://git.science.uu.nl/papanikos/pvogs_function
DOI: 10.6084/m9.figshare.13981109.v2
title: 《三元平衡定律》 全书完整版 "The law of ternary balance" full book

description: 三元平衡定律：在一个系统内，两个非平衡状态趋向于平衡状态的过程，就是三元平衡的过程。<br>通过对自然系统非线性的角度扩展的相关科学的全部研究。目录三元平衡的基本概述三元平衡状态电磁波与三元平衡状态<br>电磁波与电磁波频谱现象电子波混沌三元平衡系统三元平衡系统的趋同效应静电感应量子力学与量子间的作用力量子力学中的一些特殊现象<br>复合磁场与混沌磁场运动与磁场火星自转与火星磁场磁场与天体运动地球与磁场月球的形成与史前大洪水引力波惯性的本质三元平衡系统惯性与牛顿第一定律三元平衡系统的内阻现象磁场的力学特性<br>等等……<br><br><br>
DOI: 10.6073/pasta/f7e22bdc3545ef9ed9019cafd899bd73
title: Microbial Community Composition in lakes - Ecological characteristics of the sample at North Temperate Lakes LTER 2002 - 2007

description: Microbial community composition is inferred by a combination of automated ribosomal intergenic spacer analysis (ARISA) and PCR-generated clone library analysis. Clone libraries include both the 16S rRNA gene and the 16S-23S ribosomal intergenic spacer fragment. Phylogenetic assignments for individual ARISA fragments are obtained by comparing the ARISA fragment length from each clone to all of the profiles stored in our database. We have analyzed over 3900 clones obtained from 41 lakes that represent the range of trophic types found in temperate landscapes. Querying by ecological characteristics of the sample allows the user to retrieve sample IDs, sample dates, lake information (region, type, size, depth) and physical/chemical data (water temperature, clarity, pH, DOC, SUVA, TN, TP, nitrates/nitrites). The data can be filtered by lake name, sample date, lake information (region, type, size, depth), and physical/chemical data (water temperature, clarity, pH, DOC, SUVA, TN, TP, nitrates/nitrites). The output includes links to individual sample records, which contain links to the taxonomic composition of the sample inferred by dynamically matching clones to ARISA fragments in the individual sample