cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9kbhtm
title: Occurrence Download

description: A dataset containing 16108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus horridus"
 ]
}

 The dataset includes 16108 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011294-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48580/d3c23.v91
title: Global Register of Introduced and Invasive Species - Seychelles
DOI: 10.15468/dl.9g7ek7
title: Occurrence Download

description: A dataset containing 2067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Flemingia strobilifera",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 2067 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011297-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48580/d3bzw.v91
title: Global Register of Introduced and Invasive Species - Juan Fernandez Islands, Chile
DOI: 10.15468/dl.uya4em
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xerophyta elegans",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 76 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011298-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14817607
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.48580/dd4x2.v14
title: Moths observed during the "Objective 1000" inventory project at the Botanical Garden Jean Massart (Auderghem, Brussels Capital Region)
DOI: 10.11582/2026.lnazzm1k
title: Greenland ice sheet model output with mass-conserved fluxes

description: This dataset contains output from Greenland ice sheet simulations based on https://doi.org/10.5194/tc-19-1205-2025 and https://doi.org/10.11582/2024.00128, but with fully mass-conserved fluxes.
DOI: 10.48580/df57x.v120
title: Taxon list of pest organisms for IPM at natural history collections compiled at the SNSB
DOI: 10.5286/isis.e.rb2520167-1
title: Belt and Braces: Cryoprotection and Osmoprotection in Zwitterionic Osmolyte Solutions

description: Cytosol, the liquid compartmentalised by the cell membrane, contains a mixture of salts and organic molecules or “osmolytes”, of which many are zwitterionic. Cytosol composition can be regulated to protect against both salt stress and cold stress through the use of osmoprotecting and cryoprotecting agents – where many zwitterionic osmolytes fulfil both functions. Recently, we investigated the osmoprotecting-effect of the archetypal zwitterionic osmolyte trimethylglycine at room temperature, revealing ordered aggregate formation that was strongly influenced by salt species. Here we will study the cryoprotecting effect of model cytosol solutions by using neutron scattering. By cooling mixtures of trimethylglycine and sodium chloride, we aim to disentangle the osmoprotectant- and cryoprotectant- effect on water structure, ion coordination and aggregation. Previously the impact of cryo- and osmo- protection have largely been considered separately, but the two are inextricably linked: in many cases low (sub-zero) temperatures are accessed through high salt concentration such as in salt lakes, by depression of the freezing point. These results will have significant impact on our understanding of the role of zwitterionic osmolytes in maintaining protein structure and function in the most extreme environments life can survive in.
DOI: 10.5286/isis.e.rb2520167
title: Belt and Braces: Cryoprotection and Osmoprotection in Zwitterionic Osmolyte Solutions

description: Cytosol, the liquid compartmentalised by the cell membrane, contains a mixture of salts and organic molecules or “osmolytes”, of which many are zwitterionic. Cytosol composition can be regulated to protect against both salt stress and cold stress through the use of osmoprotecting and cryoprotecting agents – where many zwitterionic osmolytes fulfil both functions. Recently, we investigated the osmoprotecting-effect of the archetypal zwitterionic osmolyte trimethylglycine at room temperature, revealing ordered aggregate formation that was strongly influenced by salt species. Here we will study the cryoprotecting effect of model cytosol solutions by using neutron scattering. By cooling mixtures of trimethylglycine and sodium chloride, we aim to disentangle the osmoprotectant- and cryoprotectant- effect on water structure, ion coordination and aggregation. Previously the impact of cryo- and osmo- protection have largely been considered separately, but the two are inextricably linked: in many cases low (sub-zero) temperatures are accessed through high salt concentration such as in salt lakes, by depression of the freezing point. These results will have significant impact on our understanding of the role of zwitterionic osmolytes in maintaining protein structure and function in the most extreme environments life can survive in.
DOI: 10.5281/zenodo.18620081
title: Is within-host viral community assembly shaped by local adaptation?

description: Virus occurences and host plant information from Plantago lanceolata individuals.  The methods of collection as well as sample processing, including virus sequencing, are described in preprint Is within-host viral community assembly shaped by local adaptation?
DOI: 10.5281/zenodo.18620082
title: Is within-host viral community assembly shaped by local adaptation?

description: Virus occurences and host plant information from Plantago lanceolata individuals.  The methods of collection as well as sample processing, including virus sequencing, are described in preprint Is within-host viral community assembly shaped by local adaptation?
DOI: 10.15468/dl.h7z7wq
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypostomus delimai",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011299-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31324018
title: Prognostic Risk Modeling Based on Integrated Multi-Omics Analysis Identifies CRY2 as a Key Regulator in Tumor Immunity and Patient Survival in Colorectal Cancer​

description: Background: Colorectal cancer (CRC) prognosis is driven by metabolic heterogeneity. This study integrates ferroptosis and lipid metabolism to develop a robust prognostic signature and evaluates the role of CRY2 in CRC progression.Methods: Using TCGA-COAD and GSE39582 cohorts, we identified gene modules via WGCNA. A machine learning framework identified StepCox[forward] + Random Survival Forest as the optimal model. The immune landscape was assessed using CIBERSORT and TIDE. CRY2 was validated through siRNA knockdown, functional assays, and a murine xenograft model.Results: The resulting RiskScore was an independent prognostic factor (HR &gt; 1.1, P &lt; 0.001). High-risk patients showed poorer overall survival and an immunosuppressive microenvironment (elevated Tregs/Th2 cells, depleted CD4+ T cells), alongside higher TIDE scores suggesting immunotherapy resistance. GSEA linked high-risk scores to cell cycle and oxidative phosphorylation pathways. CRY2 emerged as a key oncogenic driver. High CRY2 expression correlated with advanced tumor stages. In vitro, CRY2 knockdown inhibited proliferation and migration while inducing G1 phase arrest. In vivo, silencing CRY2 significantly suppressed xenograft growth and Ki-67 expression.Conclusion: We established a novel ferroptosis- and lipid-related signature that effectively stratifies CRC survival and immune response. Furthermore, we identified CRY2 as a critical regulator of tumor growth, highlighting its potential as a therapeutic target and biomarker.
DOI: 10.6084/m9.figshare.31324018.v1
title: Prognostic Risk Modeling Based on Integrated Multi-Omics Analysis Identifies CRY2 as a Key Regulator in Tumor Immunity and Patient Survival in Colorectal Cancer​

description: Background: Colorectal cancer (CRC) prognosis is driven by metabolic heterogeneity. This study integrates ferroptosis and lipid metabolism to develop a robust prognostic signature and evaluates the role of CRY2 in CRC progression.Methods: Using TCGA-COAD and GSE39582 cohorts, we identified gene modules via WGCNA. A machine learning framework identified StepCox[forward] + Random Survival Forest as the optimal model. The immune landscape was assessed using CIBERSORT and TIDE. CRY2 was validated through siRNA knockdown, functional assays, and a murine xenograft model.Results: The resulting RiskScore was an independent prognostic factor (HR &gt; 1.1, P &lt; 0.001). High-risk patients showed poorer overall survival and an immunosuppressive microenvironment (elevated Tregs/Th2 cells, depleted CD4+ T cells), alongside higher TIDE scores suggesting immunotherapy resistance. GSEA linked high-risk scores to cell cycle and oxidative phosphorylation pathways. CRY2 emerged as a key oncogenic driver. High CRY2 expression correlated with advanced tumor stages. In vitro, CRY2 knockdown inhibited proliferation and migration while inducing G1 phase arrest. In vivo, silencing CRY2 significantly suppressed xenograft growth and Ki-67 expression.Conclusion: We established a novel ferroptosis- and lipid-related signature that effectively stratifies CRC survival and immune response. Furthermore, we identified CRY2 as a critical regulator of tumor growth, highlighting its potential as a therapeutic target and biomarker.
DOI: 10.15468/dl.vtknzk
title: Occurrence Download

description: A dataset containing 3121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spongites yendoi"
 ]
}

 The dataset includes 3121 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011300-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18548202
title: Geometric and Electronic Structures of Fe-S Species in Prebiotic Oceans
title: Formation of Neutral [4Fe-4S] Clusters
title: Quantum Chemical Database
title: Reaction Network Parameters

description: The data set contains all the computational files related to mapping the plausible Fe-S species under simulated pre-biotic conditions that connects the initial (up to four iron ions) formation of Fe-S mackinawite-like nanoparticles versus 2Fe-2S rhombs and 4Fe-4S cubanes. The related publication in the special issue of JIB explores the thermodynamic feasibility of proton acting as an oxidizing agent that allows for the formation of oxidized Fe species with concomitant hydrogen gas evolution. The emergence of the ferric iron in molecular clusters can be further stabilized by bisulfide ligands as 'pre-biotic thiolates', which under neutral pH conditions, can give rise to the formation of [4Fe-4S] clusters. The estimated enthalpy and free energy values were utilized to establish a reaction network model with PHREEQC package with MinteqA2 database.

The depository was organized according to the published figures.

Figure 1: provides the XYZ coordinates of the most dominant species in various oxidation states.

Figures 2-4: contain the compilation of all the calculations that were used to validate close to 100 density functionals.

Figure 5: contains the calculations by some 'old density functionals' such as B3LYP and B(5%HF)P86 and the top five performing functionals for the reference reactions such as water autoionization, hydrogen sulfide acid dissociation, ferrous and ferric iron hydrolysis, and FeS formation.

Figure 6: compares and contrasts the energetics of non-solvated and solvated rhombs and cubanes to illustrate the critical functional dependence for describing molecular cluster formation in competition to mackinawite-like nanoparticle formation.

Figures 7 and 8: present the results of reaction network model. The corresponding PHREEQC version 3 parameters and scripts are to be used with Minteq version 4 dataset.

The 'lst' files contain the content of each compressed/zip file.
DOI: 10.5281/zenodo.18620379
title: Geometric and Electronic Structures of Fe-S Species in Prebiotic Oceans
title: Formation of Neutral [4Fe-4S] Clusters
title: Quantum Chemical Database
title: Reaction Network Parameters

description: The data set contains all the computational files related to mapping the plausible Fe-S species under simulated pre-biotic conditions that connects the initial (up to four iron ions) formation of Fe-S mackinawite-like nanoparticles versus 2Fe-2S rhombs and 4Fe-4S cubanes. The related publication in the special issue of JIB explores the thermodynamic feasibility of proton acting as an oxidizing agent that allows for the formation of oxidized Fe species with concomitant hydrogen gas evolution. The emergence of the ferric iron in molecular clusters can be further stabilized by bisulfide ligands as 'pre-biotic thiolates', which under neutral pH conditions, can give rise to the formation of [4Fe-4S] clusters. The estimated enthalpy and free energy values were utilized to establish a reaction network model with PHREEQC package with MinteqA2 database.

The depository was organized according to the published figures.

Figure 1: provides the XYZ coordinates of the most dominant species in various oxidation states.

Figures 2-4: contain the compilation of all the calculations that were used to validate close to 100 density functionals.

Figure 5: contains the calculations by some 'old density functionals' such as B3LYP and B(5%HF)P86 and the top five performing functionals for the reference reactions such as water autoionization, hydrogen sulfide acid dissociation, ferrous and ferric iron hydrolysis, and FeS formation.

Figure 6: compares and contrasts the energetics of non-solvated and solvated rhombs and cubanes to illustrate the critical functional dependence for describing molecular cluster formation in competition to mackinawite-like nanoparticle formation.

Figures 7 and 8: present the results of reaction network model. The corresponding PHREEQC version 3 parameters and scripts are to be used with Minteq version 4 dataset.

The 'lst' files contain the content of each compressed/zip file.
DOI: 10.15468/dl.5f7dn7
title: Occurrence Download

description: A dataset containing 21789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen, Machine Observation)",
 "Year is greater than or equal to 1980",
 "Geometry POLYGON((-24.6 34.6, 35.65 34.6, 35.65 72, -24.6 72, -24.6 34.6))"
 ]
}

 The dataset includes 21789 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011301-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0jqqno
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nassa situla (Reeve, 1846)"
 ]
}

 The dataset includes 92 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023118-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rn9q6e
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018094-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ovncxx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025683-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9m67f
title: Occurrence Download

description: A dataset containing 1494009941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 2010-2023"
 ]
}

 The dataset includes 1494009941 records from 31850 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035928-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1m8-yka-qyc
title: Balea perversa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm6-5j9-3jv
title: Zebrina detrita (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5gw-42z-rn6
title: Balea perversa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/24x-w1m-vwb
title: Albinaria contaminata contaminata (Rossmässler, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lee-vtr-59n
title: Epitonium algerianum (Weinkauff, 1866)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kp0-r7r-mhy
title: Barcania apolloniana Brandt, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qan-drv-2r8
title: Bulgarica fraudigera (Rossmässler, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eqq-m6m-9ab
title: Clausilia bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a8b-943-nkm
title: Cassidula aurisfelis (Bruguière, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k31-qd3-yfz
title: Ellobiidae L. Pfeiffer, 1854 (1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ntw-m6f-t9s
title: Clausilia rugosa parvula (A. Férussac, 1807)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w27-7we-g31
title: Clausilia bidentata bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/650-rra-k0q
title: Planorbis O. F. Müller, 1773

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nj6-reg-0qz
title: Clausilia rugosa parvula (A. Férussac, 1807)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tte-rvc-aqv
title: Menetus dilatatus (A. Gould, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/43q-gbq-gm2
title: Biomphalaria straminea (Dunker, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7k4-r6l-qa6
title: Cochlicopa lubrica (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8cd-lx4-pws
title: Cochlicopa lubricella (Porro, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/07v-7s6-wkb
title: Solatopupa similis (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/73s-zb5-fpm
title: Laciniaria plicata (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dq2-fdy-xh6
title: Clausilia pumila (C. Pfeiffer, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w01-byy-9d9
title: Lauria J. E. Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pkc-zx0-dbj
title: Ebala pointeli (de Folin, 1868)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sed-aqr-jax
title: Sticteulima richteri Engl, 1997

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/la2-rje-8st
title: Clausilia Draparnaud, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r39-hk6-2v2
title: Muticaria macrostoma macrostoma (Cantraine, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/12y-s40-szm
title: Melampus coffea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/865-63k-lnf
title: Gyraulus hebraicus (Bourguignat, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cmz-nft-6d8
title: Physella gyrina (Say, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d7w-ncz-6jm
title: Siphonariidae Gray, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gmh-0gm-3lf
title: Glyptophysa sumatrana (E. von Martens, 1897)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3k-kt2-wkb
title: Brachypodella subtilis (Morelet, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0s7-btm-zyn
title: Clausilia corynodes Held, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/92x-aqb-bzb
title: Macrogastra attenuata lineolata (Held, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7v-8bd-6zk
title: Nototriphora canarica (F. Nordsieck & García-Talavera, 1979)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rbk-cew-eks
title: Ancylus fluviatilis O. F. Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/940-frk-gt9
title: Albinaria contaminata contaminata (Rossmässler, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fvg-nc6-yek
title: Balea perversa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.