cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/vv5-g05-s6p
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0z-4bn-cc2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ylb-66t-hx0
title: Rhinoceros Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lq9-qfp-l1j
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/192-kza-tyt
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zy4-11z-jey
title: Elephas maximus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vw1-0kd-ztp
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2c2-8na-wkw
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fdw-y7b-h0h
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a14-a5f-1qq
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e2v-56l-h8r
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fr7-6cj-t84
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dpk-18r-sld
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l9b-jpa-brk
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4wc-4pn-pjx
title: Macaca Lacépède, 1799

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vma-s5w-h3w
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bkw-srs-15x
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/laz-z4y-cxy
title: Rusa C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.21716435
title: Hybrid immunity and protection against infection during the Omicron wave in Malta

description: By December 2021, administration of the third dose of COVID-19 vaccinations coincided with the spread of the Omicron variant in Europe. Questions had been raised on protection against infection conferred by previous vaccination and/or infection. Our study population included 252,433 participants from the COVID-19 vaccination registry in Malta. Data were then matched with the national testing database. We collected vaccination status, vaccine brand, vaccination date, infection history, and age. Using logistic regression, we examined different combinations of vaccine dose, prior infection status and time, and the odds of infection during the period when the Omicron variant was the dominant variant in Malta. Participants infected with Sars-Cov-2 prior to the Omicron wave had a significantly lower odds of being infected with the Omicron variant. Additionally, the more recent the infection and the more recent the vaccination, the lower the odds of infection. Receiving a third dose within 20 weeks of the start of the Omicron wave in Malta offered similar odds of infection as receiving a second dose within the same period. Time since vaccination was a strong determinant against infection, as was previous infection status and the number of doses taken. This finding reinforces the importance of future booster dose provision especially to vulnerable populations.
DOI: 10.6084/m9.figshare.21716435.v2
title: Hybrid immunity and protection against infection during the Omicron wave in Malta

description: By December 2021, administration of the third dose of COVID-19 vaccinations coincided with the spread of the Omicron variant in Europe. Questions had been raised on protection against infection conferred by previous vaccination and/or infection. Our study population included 252,433 participants from the COVID-19 vaccination registry in Malta. Data were then matched with the national testing database. We collected vaccination status, vaccine brand, vaccination date, infection history, and age. Using logistic regression, we examined different combinations of vaccine dose, prior infection status and time, and the odds of infection during the period when the Omicron variant was the dominant variant in Malta. Participants infected with Sars-Cov-2 prior to the Omicron wave had a significantly lower odds of being infected with the Omicron variant. Additionally, the more recent the infection and the more recent the vaccination, the lower the odds of infection. Receiving a third dose within 20 weeks of the start of the Omicron wave in Malta offered similar odds of infection as receiving a second dose within the same period. Time since vaccination was a strong determinant against infection, as was previous infection status and the number of doses taken. This finding reinforces the importance of future booster dose provision especially to vulnerable populations.
DOI: 10.6084/m9.figshare.21629547
title: Generation of self-replicating airway organoids from the cave nectar bat <i>Eonycteris spelaea</i> as a model system for studying host–pathogen interactions in the bat airway epithelium

description: Bats are reservoir hosts for various zoonotic viruses with pandemdic potential in humans and livestock. <i>In vitro</i> systems for studying bat host–pathogen interactions are of significant interest. Here, we establish protocols to generate bat airway organoids (AOs) and airway epithelial cells differentiated at the air–liquid interface (ALI-AECs) from tracheal tissues of the cave-nectar bat <i>Eonycteris spelaea</i>. In particular, we describe steps which enable laboratories that do not have access to live bats to perform extended experimental work upon procuring an initial batch of bat primary airway tissue. Complete mucociliary differentiation required treatment with IL-13. <i>E. spelaea</i> ALI-AECs supported productive infection with PRV3M, an orthoreovirus for which Pteropodid bats are considered the reservoir species. However, these ALI-AECs did not support SARS-CoV-2 infection, despite <i>E. spelaea</i> ACE2 receptor being capable of mediating SARS-CoV-2 spike pseudovirus entry. This work provides critical model systems for assessing bat species-specific virus susceptibility and the reservoir likelihood for emerging infectious agents.
DOI: 10.6084/m9.figshare.21629547.v2
title: Generation of self-replicating airway organoids from the cave nectar bat <i>Eonycteris spelaea</i> as a model system for studying host–pathogen interactions in the bat airway epithelium

description: Bats are reservoir hosts for various zoonotic viruses with pandemdic potential in humans and livestock. <i>In vitro</i> systems for studying bat host–pathogen interactions are of significant interest. Here, we establish protocols to generate bat airway organoids (AOs) and airway epithelial cells differentiated at the air–liquid interface (ALI-AECs) from tracheal tissues of the cave-nectar bat <i>Eonycteris spelaea</i>. In particular, we describe steps which enable laboratories that do not have access to live bats to perform extended experimental work upon procuring an initial batch of bat primary airway tissue. Complete mucociliary differentiation required treatment with IL-13. <i>E. spelaea</i> ALI-AECs supported productive infection with PRV3M, an orthoreovirus for which Pteropodid bats are considered the reservoir species. However, these ALI-AECs did not support SARS-CoV-2 infection, despite <i>E. spelaea</i> ACE2 receptor being capable of mediating SARS-CoV-2 spike pseudovirus entry. This work provides critical model systems for assessing bat species-specific virus susceptibility and the reservoir likelihood for emerging infectious agents.
DOI: 10.6084/m9.figshare.22825659
title: The unreversible reduced but persistent activated NK and CD8<sup>+</sup> T cells in severe/critical COVID-19 during omicron pandemic in China

description: As a hallmark of COVID-19 progression, lymphopenia alongside its subtle immune disturbance has been widely reported, but yet to be thoroughly elucidated. Aiming at exploring clinical immune biomarkers with accessibility in the current and acute omicron epidemic abrupted in China post-control era, we design a real-world prospective observation cohort in Peking Union Medical College Hospital to describe immunological, haematological profiles inducing lymphocyte subsets related to SARS-CoV-2 infection. In this COVID-19 cohort, we enrolled 17 mild/moderate (M/M), 24 severe (S) and 25 critical (C) patients. The dynamics of lymphocytes of COVID-19 demonstrated that the sharp decline of NK, CD8<sup>+</sup>, and CD4<sup>+</sup> T cell counts was the main contributor to lymphopenia in the S/C group, compared to the M/M group. Expressions of activation marker CD38 and proliferation marker Ki-67 both in CD8<sup>+</sup> T and NK cells were significantly higher in all COVID-19 patients than that in healthy donors, independent of disease severity. The subsequent analysis showed in contrast to the M/M group, NK and CD8<sup>+</sup> T cell counts remained low-level after therapy in the S/C group. CD38 and Ki-67 expressions in NK and CD8<sup>+</sup> T cells still stay at a high level, despite active treatment. Targeting relatively elderly patients with SARS-CoV-2 infection, severe COVID-19 features the unreversible reduction of NK and CD8<sup>+</sup> T cells with persistent activation and proliferation, which assist clinicians in early recognizing and saving severe or critical COVID-19 patients. Given that immunophenotype, the new immunotherapy improving NK and CD8<sup>+</sup> T lymphocyte antiviral efficiency should be considered.
DOI: 10.6084/m9.figshare.22825659.v1
title: The unreversible reduced but persistent activated NK and CD8<sup>+</sup> T cells in severe/critical COVID-19 during omicron pandemic in China

description: As a hallmark of COVID-19 progression, lymphopenia alongside its subtle immune disturbance has been widely reported, but yet to be thoroughly elucidated. Aiming at exploring clinical immune biomarkers with accessibility in the current and acute omicron epidemic abrupted in China post-control era, we design a real-world prospective observation cohort in Peking Union Medical College Hospital to describe immunological, haematological profiles inducing lymphocyte subsets related to SARS-CoV-2 infection. In this COVID-19 cohort, we enrolled 17 mild/moderate (M/M), 24 severe (S) and 25 critical (C) patients. The dynamics of lymphocytes of COVID-19 demonstrated that the sharp decline of NK, CD8<sup>+</sup>, and CD4<sup>+</sup> T cell counts was the main contributor to lymphopenia in the S/C group, compared to the M/M group. Expressions of activation marker CD38 and proliferation marker Ki-67 both in CD8<sup>+</sup> T and NK cells were significantly higher in all COVID-19 patients than that in healthy donors, independent of disease severity. The subsequent analysis showed in contrast to the M/M group, NK and CD8<sup>+</sup> T cell counts remained low-level after therapy in the S/C group. CD38 and Ki-67 expressions in NK and CD8<sup>+</sup> T cells still stay at a high level, despite active treatment. Targeting relatively elderly patients with SARS-CoV-2 infection, severe COVID-19 features the unreversible reduction of NK and CD8<sup>+</sup> T cells with persistent activation and proliferation, which assist clinicians in early recognizing and saving severe or critical COVID-19 patients. Given that immunophenotype, the new immunotherapy improving NK and CD8<sup>+</sup> T lymphocyte antiviral efficiency should be considered.
DOI: 10.6084/m9.figshare.21864376
title: Phylogenetic analysis and virulence characteristics of methicillin-resistant <i>Staphylococcus aureus</i> ST764-SCC<i>mec</i> II: an emerging hypervirulent clone ST764-t1084 in China

description: Previous studies have shown that the increased prevalent ST764 clone in China, Japan, and other Asian areas. However, the knowledge of the genetic features and virulence characteristics of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) ST764 in China is still limited. In this study, we identified 52 ST764-SCC<i>mec</i> type II isolates collected from five cities in China between 2014 and 2021. Whole genome sequencing showed that the most common staphylococcal protein A (<i>spa</i>) types of ST764 in China were t002 (55.78%) and t1084 (40.38%). Virulence assays showed that ST764-t1084 isolates had high haemolytic activity and α-toxin levels. Of the critical regulatory factors affecting α-toxin production, only the <i>SaeRS</i> was highly expressed in ST764-t1084 isolates. Mouse abscess model indicated that the virulence of ST764-t1084 isolates was comparable to that of <i>S. aureus</i> USA300-LAC famous for its hypervirulence. Interestingly, ST764-t002 isolates exhibited stronger biofilm formation and cell adhesion capacities than ST764-t1084 isolates. This seems to explain why ST764-t002 subclone has become more prevalent in China in recent years. Phylogenetic analysis suggested that all ST764 isolates from China in Clade III were closely related to KUN1163 (an isolate from Japan). Notably, genomic analysis revealed that the 52 ST764 isolates did not carry arginine catabolic mobile element (ACME), which differed from ST764 isolates in Japan. Additionally, most ST764 isolates (69.23%) harboured an obvious deletion of approximately 5 kb in the SCC<i>mec</i> II cassette region compared to KUN1163. Our findings shed light on the potential global transmission and genotypic as well as phenotypic characteristics of ST764 lineage.
DOI: 10.6084/m9.figshare.21864376.v2
title: Phylogenetic analysis and virulence characteristics of methicillin-resistant <i>Staphylococcus aureus</i> ST764-SCC<i>mec</i> II: an emerging hypervirulent clone ST764-t1084 in China

description: Previous studies have shown that the increased prevalent ST764 clone in China, Japan, and other Asian areas. However, the knowledge of the genetic features and virulence characteristics of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) ST764 in China is still limited. In this study, we identified 52 ST764-SCC<i>mec</i> type II isolates collected from five cities in China between 2014 and 2021. Whole genome sequencing showed that the most common staphylococcal protein A (<i>spa</i>) types of ST764 in China were t002 (55.78%) and t1084 (40.38%). Virulence assays showed that ST764-t1084 isolates had high haemolytic activity and α-toxin levels. Of the critical regulatory factors affecting α-toxin production, only the <i>SaeRS</i> was highly expressed in ST764-t1084 isolates. Mouse abscess model indicated that the virulence of ST764-t1084 isolates was comparable to that of <i>S. aureus</i> USA300-LAC famous for its hypervirulence. Interestingly, ST764-t002 isolates exhibited stronger biofilm formation and cell adhesion capacities than ST764-t1084 isolates. This seems to explain why ST764-t002 subclone has become more prevalent in China in recent years. Phylogenetic analysis suggested that all ST764 isolates from China in Clade III were closely related to KUN1163 (an isolate from Japan). Notably, genomic analysis revealed that the 52 ST764 isolates did not carry arginine catabolic mobile element (ACME), which differed from ST764 isolates in Japan. Additionally, most ST764 isolates (69.23%) harboured an obvious deletion of approximately 5 kb in the SCC<i>mec</i> II cassette region compared to KUN1163. Our findings shed light on the potential global transmission and genotypic as well as phenotypic characteristics of ST764 lineage.
DOI: 10.15468/dl.peu5cu
title: Occurrence Download

description: A dataset listing the 1953 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((133.32021 -24.26679,134.50371 -24.26679,134.50371 -23.16243,133.32021 -23.16243,133.32021 -24.26679))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 1953 records were derived from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031052-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7939/r3-f2cm-x111
title: Tailpipe NOx Emission Dataset
title: Tailpipe NOx Emission Dataset for Real-Driving NOx Emissions of a Heavy-Duty Diesel Truck

description: The dataset contains information on tailpipe NOx emissions for a heavy-duty diesel truck during real-driving conditions. The dataset includes the following columns: ambient air temperature (in degrees Celsius), vehicle speed (in km/h), engine speed (in rpm), engine torque (in N.m), fuel consumption (in L/h), and tailpipe NOx emissions (in ppm). The data was collected at a frequency of 10Hz, covering a distance of over 10,000 km during conducted in 37 separate trips between Edmonton and Calgary, Alberta, Canada in January 2022. The dataset consists of over 4 million data points, providing detailed insights into the truck's emissions performance in real-world scenarios. The truck is equipped with Selective Catalytic Reduction (SCR) exhaust after-treatment NOx reduction system. NOTE: .rar file is password protected.
DOI: 10.15468/dl.s4k6z6
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brahea edulis H.Wendl. ex S.Watson"
 ]
}

 The dataset includes 162 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031072-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e229741
title: EIA Bulk File Downloads

description: This collection encompasses all bulk data downloads available on EIA's open data site on 5/14/2025. The manifest.txt files provides descriptions of the included datasets in a JSON format. The datasets are divided by subject.<br><br>Survey forms used to collect the data are available here: https://www.eia.gov/survey/<br><br>File name | Subject<br>AEO2025.zip | Annual Energy Outlook 2025<br>SEDS.zip | State Energy Data Systems<br>ELEC.zip | Electricity<br>NG.zip | Natural Gas<br>PET.zip | Petroleum<br>TOTAL.zip | Total Energy<br>COAL.zip | Coal<br>STEO.zip | Short Term Energy Outlook<br>PET_IMPORTS.zip | Crude Oil Imports<br>INTL.zip | International Energy Data<br>EBA.zip | US Electric System Operating Data (2019-present)<br>EBA-pre2019.zip | US Electric System Operating Data (before 2019)<br>EMISS.zip | CO2 Emissions<br>IEO.zip | International Energy Outlook<br>NUC_STATUS.zip | U.S. Nuclear Outages
DOI: 10.3886/e229741v1
title: EIA Bulk File Downloads

description: This collection encompasses all bulk data downloads available on EIA's open data site on 5/14/2025. The manifest.txt files provides descriptions of the included datasets in a JSON format. The datasets are divided by subject.<br><br>Survey forms used to collect the data are available here: https://www.eia.gov/survey/<br><br>File name | Subject<br>AEO2025.zip | Annual Energy Outlook 2025<br>SEDS.zip | State Energy Data Systems<br>ELEC.zip | Electricity<br>NG.zip | Natural Gas<br>PET.zip | Petroleum<br>TOTAL.zip | Total Energy<br>COAL.zip | Coal<br>STEO.zip | Short Term Energy Outlook<br>PET_IMPORTS.zip | Crude Oil Imports<br>INTL.zip | International Energy Data<br>EBA.zip | US Electric System Operating Data (2019-present)<br>EBA-pre2019.zip | US Electric System Operating Data (before 2019)<br>EMISS.zip | CO2 Emissions<br>IEO.zip | International Energy Outlook<br>NUC_STATUS.zip | U.S. Nuclear Outages
DOI: 10.6084/m9.figshare.27625698
title: Mouse Schistosome Microbiome Data

description: This is the master dataset used for the manuscript, titled “Does schistosome infection affect behavior through the gut-brain axis?”. Includes excel spreadsheets with sample data, descriptions, r-code, and phyloseq objects (.rds files).
DOI: 10.15468/dl.whechv
title: Occurrence Download

description: A dataset containing 6415112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 6415112 records from 1001 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031057-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk4k4k
title: Occurrence Download

description: A dataset containing 837215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-03-19",
 "EventDate is less than or equal to 2025-04-18",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 837215 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031056-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38n9de
title: Occurrence Download

description: A dataset containing 6130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parkinsonia florida (Benth. ex A.Gray) S.Watson"
 ]
}

 The dataset includes 6130 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031073-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7939/r3k475
title: CEOs 2012

description: This item consists of two files: the dataset and the dataset list (a key to the fields in the dataset file).
DOI: 10.17909/pg86-j196
title: ReveaLLAGN Sources

description: MIRI/MRS IFU for long, medium,short for each channel (1-4). NIRspec IFU for filter combinations F290LP;G395H and F170LP;G235
DOI: 10.15468/dl.c9a6tf
title: Occurrence Download

description: A dataset listing the 1542 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((133.74514 -23.86775,134.10559 -23.86775,134.10559 -23.54469,133.74514 -23.54469,133.74514 -23.86775))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 1542 records were derived from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031069-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.