cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14012820
title: Leaf & wood phenology dataset of four angiosperm deciduous tree species

description: This record contains dataset and R code associated with the paper "No winter halt in belowground wood growth of four angiosperm deciduous tree species" by Marchand et al. (2025).

The current release includes the following files:



Marchand_Nature_Eco_Evol.html: Output of the statistical analyses and figures

Marchand_Nature_Eco_Evol.Rmd: R script 

Bud_Leaf_dev.csv: bud and leaf development scores dataset

climate.csv: climatic dataset

fine_root.csv: fine roots surface dataset

senescence_dataset.csv: leaf coloration and fall dataset

Temp_TH.csv: relation temperature and thickening dataset

xylogenesis.csv: wood cells enlargement and thickening dataset
DOI: 10.15468/dl.2befq7
title: Occurrence Download

description: A dataset containing 121154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chloroclystis v-ata"
 ]
}

 The dataset includes 121154 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021737-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21410/7e4/tzu9zm
title: 1 - Collegiality: Lawfirm network dataset / Collégialité : jeu de données "réseaux d'avocats d'affaires"

description: Cette page présente les jeux de données de l'enquête.
DOI: 10.57745/rrsf5t
title: docker-image-seeds.tar

description: the docker image for implementing the tutorial using docker
DOI: 10.57745/gjg3va
title: seed_inference_tutorial.zip

description: tutorial zip archive
DOI: 10.57745/3z5l45
title: Tutorial Repository: Prediction of source nutrients for microorganisms using metabolic networks

description: This repository pertains to the Chapter "Prediction of source nutrients for microorganisms using metabolic networks", in the book Computational Methods for Molecular Microbiology (Springer, upcoming). It contains two files: 1. A zip file (seed_inference_tutorial.zip), which contains the necessary files for running the seed inference tutorial. This includes two python scripts, two bash scripts, four text files, and two SBML metabolic models, in the directory structure outlined below. 2. A docker image (docker-image-seeds.tar), which includes the contents the zip file, as well as the conditions and configurations for running the commands using docker. This can be loaded with the command `docker load -i docker-image-seeds.tar` Tutorial directory structure: . ├── LICENSE.md ├── objective │   ├── iCN718_target.txt │   └── toy-model_target.txt ├── README.txt ├── sbml │   ├── iCN718.xml │   └── toy-model.xml ├── scripts │   ├── cobra_seedsearch │   │   ├── cobra_seedsearch.py │   │   └── run_cobra_seedsearch.sh │   └── met_get │   ├── met_get.py │   └── run_met_get.sh └── target ├── iCN718_targets.txt └── toy-model_targets.txt
DOI: 10.15468/dl.htdghh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alternanthera sessilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021777-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21410/7e4/03snh1
title: 2 - Collegiality Lawfirm network dataset: Attributes and ties - Logistic regressions, P2 models and ERGMs

description: Cette page présente la construction des bases de données articulant les attributs des acteurs aux attributs des relations ainsi que les analyses de ces bases.
DOI: 10.15468/dl.p6eswp
title: Occurrence Download

description: A dataset containing 6094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.09445 47.33163,0.40845 47.33123,0.40643 47.7028,-0.09445 47.71293,-0.09445 47.33163))",
 "IucnRedListCategory is one of (CR, EN, VU, NT)",
 "OccurrenceStatus is Present",
 "Year 2000-2026"
 ]
}

 The dataset includes 6094 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021778-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48573/4wh8-4n54
title: Sicherheit 2025. Aussen-, Sicherheits- und Verteidigungspolitische Meinungsbildung im Trend
title: Sicherheit 2025. The Trend of Opinions on Foreign, Security, and Defense Policy
DOI: 10.48573/r5bd-p408
title: Sicherheit 2025. Aussen-, Sicherheits- und Verteidigungspolitische Meinungsbildung im Trend
title: Sicherheit 2025. The Trend of Opinions on Foreign, Security, and Defense Policy
DOI: 10.21410/7e4/thhbc4
title: 3 - Collegiality Lawfirm network dataset: Multiplexity - Social exchange among peers

description: Analyse des 3 réseaux "collaboration", "conseil", "amitié" ensemble : échanges ou trocs de ces ressources entre tous les membres du réseau. Reconstitution des règles de l'échange social des 3 types de ressources.
DOI: 10.15468/dl.ub6h5b
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((51.85274 11.8478,54.93121 11.8478,54.93121 13.0545,51.85274 13.0545,51.85274 11.8478))",
 "TaxonKey is Orthoptera"
 ]
}

 The dataset includes 185 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005962-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21410/7e4/2m0dnq
title: 5 - Collegiality Lawfirm network dataset: Networks and performance - Firm accounts

description: Les publications ci-dessous : exemples d'analyses utilisant les variables mesurant la performance économique des avocats en lien avec leurs réseaux. Encore plus bas, exemples de modèles de régression cherchant les variables expliquant la performance économique des avocats.
DOI: 10.15468/dl.kbntme
title: Occurrence Download

description: A dataset containing 9968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus retroflexus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 9968 records from 437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021782-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31346782
title: Dataset underpinning phylogenetics for <i>Faster and smaller: heterochronic shift in gene expression leads to larval onset of spermatogenesis and miniaturized males</i>.

description: Sequences, alignments, and phylogenetic trees (in newick format) used to classify Forkhead, SOX, and DMRT genes from <i>Osedax japonicus</i> and other species.
DOI: 10.6084/m9.figshare.31346782.v1
title: Dataset underpinning phylogenetics for <i>Faster and smaller: heterochronic shift in gene expression leads to larval onset of spermatogenesis and miniaturized males</i>.

description: Sequences, alignments, and phylogenetic trees (in newick format) used to classify Forkhead, SOX, and DMRT genes from <i>Osedax japonicus</i> and other species.
DOI: 10.5281/zenodo.18656689
title: BD-GRF6: A Six-Class Bangladeshi Speech Dataset for Real and Fake Classification Across Male, Female, and Third Gender

description: BD-GRF6 is a structured six-class Bangladeshi speech dataset developed to support research in gender-aware real and fake voice classification. The dataset includes speech recordings from three gender categories: Male, Female, and Third Gender. Each gender category contains both authentic (real) and manipulated (fake/spoofed) speech samples, resulting in six distinct classes: Male Real, Male Fake, Female Real, Female Fake, Third Gender Real, and Third Gender Fake.

The dataset comprises a total of 13,566 audio files with an overall duration of approximately 18.7 hours. The recordings are organized into clearly separated class-wise directories to facilitate supervised machine learning and deep learning experiments. The dataset is designed to support tasks such as real vs. fake voice detection, gender-aware spoof detection, and multi-class speech classification.

All speech samples are in Bangla (Bengali) and represent Bangladeshi speakers. The dataset aims to promote research in speech forensics, anti-spoofing systems, biometric security, and inclusive gender-based voice analysis. By including third gender speech data, BD-GRF6 contributes toward more inclusive and representative speech datasets.

This dataset can be used for academic research, benchmarking classification models, and developing robust real and fake speech detection systems.
DOI: 10.5281/zenodo.18656688
title: BD-GRF6: A Six-Class Bangladeshi Speech Dataset for Real and Fake Classification Across Male, Female, and Third Gender

description: BD-GRF6 is a structured six-class Bangladeshi speech dataset developed to support research in gender-aware real and fake voice classification. The dataset includes speech recordings from three gender categories: Male, Female, and Third Gender. Each gender category contains both authentic (real) and manipulated (fake/spoofed) speech samples, resulting in six distinct classes: Male Real, Male Fake, Female Real, Female Fake, Third Gender Real, and Third Gender Fake.

The dataset comprises a total of 13,566 audio files with an overall duration of approximately 18.7 hours. The recordings are organized into clearly separated class-wise directories to facilitate supervised machine learning and deep learning experiments. The dataset is designed to support tasks such as real vs. fake voice detection, gender-aware spoof detection, and multi-class speech classification.

All speech samples are in Bangla (Bengali) and represent Bangladeshi speakers. The dataset aims to promote research in speech forensics, anti-spoofing systems, biometric security, and inclusive gender-based voice analysis. By including third gender speech data, BD-GRF6 contributes toward more inclusive and representative speech datasets.

This dataset can be used for academic research, benchmarking classification models, and developing robust real and fake speech detection systems.
DOI: 10.5281/zenodo.17379108
title: SAT-C_Data

description: Dataset forming the bases for analyses in the manuscript: 

A Novel Soil Porewater Extraction Technique for Enhanced Rock Weathering products:

Saturation - centrifugation
DOI: 10.5281/zenodo.18657689
title: SAT-C_Data

description: Dataset forming the bases for analyses in the manuscript: 

A Novel Soil Porewater Extraction Technique for Enhanced Rock Weathering products:

Saturation - centrifugation
DOI: 10.15468/dl.8ue77e
title: Occurrence Download

description: A dataset containing 47 records in GBIF matching the query:

SELECT
 countryCode,
 GBIF_ISEA3HCode(
 7, 
 decimalLatitude,
 decimalLongitude,
 COALESCE(coordinateUncertaintyInMeters, 1000)
 ) AS geogrid_id,
 COUNT(DISTINCT speciesKey) AS unique_species_count
FROM occurrence
WHERE countryCode = 'KE'
AND coordinateUncertaintyInMeters &lt;= 2000
AND hasGeospatialIssues = FALSE
AND hasCoordinate = TRUE
AND occurrenceStatus = 'PRESENT'
GROUP BY countryCode, geogrid_id;


 The dataset's 47 records were derived from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021775-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21410/7e4/1bsgt6
title: 4 - Collegiality Lawfirm network dataset: Networks and Norms

description: Influence des réseaux sur les choix normatifs des acteurs et de l'organisation en situation de controverses.
DOI: 10.5281/zenodo.18657361
title: Early life chronic stress-disrupted activity of the dorsal raphe nucleus selectively drives behavioral impairments - RAW DATA

description: Repository Description

This repository contains the raw source data associated with the manuscript:

“Early life chronic stress-disrupted activity of the dorsal raphe nucleus selectively drives behavioral impairments.”

The datasets include behavioral and in vivo neuronal activity recordings used in all primary analyses reported in the manuscript.



Data Organization

All files begin with the prefix manuscript_data and are organized into four primary datasets:

1. Anxiety Sampling Dataset (_Anxiety)

This dataset contains behavioral metrics collected during anxiety-related behavioral testing.

Common variables:





Animal_id – unique animal identifier




group – experimental group



Behavioral measures include:





Time spent in centrum, shallow arm, and deep arm




Frequency of entries into each region




Latency to enter each region




Distance moved




Mean velocity



All variables are numeric and represent individual animal-level measurements.



2. Behavioral Habituation – Baseline (_BehavHabituation_BASELINE)

This dataset contains locomotor and time-series data collected prior to stimulus presentation.

Variables include:





Real-time measurements




Processed (corrected and scaled) time variables




Distance moved



Data are structured at the sampling level and linked to individual animals via Animal_id.



3. Behavioral Habituation – Stimulus Condition (_BehavHabituation_STIMULI)

This dataset contains behavioral data collected before and during stimulus exposure.

Additional variables:





stimulus_id – identifier for the applied stimulus




stimulus_period – indicates whether data were recorded before or during stimulus presentation



Includes:





Real-time and processed time variables




Distance moved





4. Dorsal Raphe Nucleus (DRN) Neuronal Activity Dataset (_DRN_Activity)

This dataset contains single-neuron in vivo calcium imaging data recorded from the dorsal raphe nucleus.

Variables include:





Animal_id – animal identifier




group – experimental group




Neuron_id – neuron identifier




Sample_id – recording/sample identifier




Absolute position (µm)




Normalized position (distance from the rostral-most 5-HT DRN neuron, in µm)




GABAergic phenotype classification




stim_* columns – stimulus-evoked calcium responses expressed as ΔF/F (%)



Each row corresponds to an individual neuron.

 

5. Supplementary Figure Data

This dataset contains processed data, served as the source of figures in the published manuscript.
DOI: 10.5281/zenodo.18657360
title: Early life chronic stress-disrupted activity of the dorsal raphe nucleus selectively drives behavioral impairments - RAW DATA

description: Repository Description

This repository contains the raw source data associated with the manuscript:

“Early life chronic stress-disrupted activity of the dorsal raphe nucleus selectively drives behavioral impairments.”

The datasets include behavioral and in vivo neuronal activity recordings used in all primary analyses reported in the manuscript.



Data Organization

All files begin with the prefix manuscript_data and are organized into four primary datasets:

1. Anxiety Sampling Dataset (_Anxiety)

This dataset contains behavioral metrics collected during anxiety-related behavioral testing.

Common variables:





Animal_id – unique animal identifier




group – experimental group



Behavioral measures include:





Time spent in centrum, shallow arm, and deep arm




Frequency of entries into each region




Latency to enter each region




Distance moved




Mean velocity



All variables are numeric and represent individual animal-level measurements.



2. Behavioral Habituation – Baseline (_BehavHabituation_BASELINE)

This dataset contains locomotor and time-series data collected prior to stimulus presentation.

Variables include:





Real-time measurements




Processed (corrected and scaled) time variables




Distance moved



Data are structured at the sampling level and linked to individual animals via Animal_id.



3. Behavioral Habituation – Stimulus Condition (_BehavHabituation_STIMULI)

This dataset contains behavioral data collected before and during stimulus exposure.

Additional variables:





stimulus_id – identifier for the applied stimulus




stimulus_period – indicates whether data were recorded before or during stimulus presentation



Includes:





Real-time and processed time variables




Distance moved





4. Dorsal Raphe Nucleus (DRN) Neuronal Activity Dataset (_DRN_Activity)

This dataset contains single-neuron in vivo calcium imaging data recorded from the dorsal raphe nucleus.

Variables include:





Animal_id – animal identifier




group – experimental group




Neuron_id – neuron identifier




Sample_id – recording/sample identifier




Absolute position (µm)




Normalized position (distance from the rostral-most 5-HT DRN neuron, in µm)




GABAergic phenotype classification




stim_* columns – stimulus-evoked calcium responses expressed as ΔF/F (%)



Each row corresponds to an individual neuron.

 

5. Supplementary Figure Data

This dataset contains processed data, served as the source of figures in the published manuscript.
DOI: 10.15468/dl.tu4t8q
title: Occurrence Download

description: A dataset containing 249615599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Charadriidae, Cisticolidae, Columbidae, Corvidae)"
 ]
}

 The dataset includes 249615599 records from 11252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021743-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp793f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solenogastres)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-60 -30,-30 -30,-30 0,-60 0,-60 -30))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011923-251009101135966/datasets/export for details.
DOI: 10.15468/dl.8zsvzk
title: Occurrence Download

description: A dataset containing 16146 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomy and distribution of ecosystem types: implementation of ecosystemology principles"
 ]
}

 The dataset includes 16146 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011920-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqycuy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solenogastres)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-30 -30,0 -30,0 0,-30 0,-30 -30))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011921-251009101135966/datasets/export for details.
DOI: 10.15468/dl.jyc4tm
title: Occurrence Download

description: A dataset containing 6580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biscutella didyma"
 ]
}

 The dataset includes 6580 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxpa5w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADW4218"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005473-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cxxr6
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagothrix lagothricha"
 ]
}

 The dataset includes 2091 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005474-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztk6d4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "Country is Bangladesh",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005476-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29ggv5
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossoloma oblongicalyx"
 ]
}

 The dataset includes 253 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005475-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mmewv
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Limax maximus"
 ]
}

 The dataset includes 82 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005477-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yexh4b
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biscutella divionensis"
 ]
}

 The dataset includes 208 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005478-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj9d9u
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heliotropium indicum",
 "Country is Bangladesh",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005482-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.