cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hyzth9
title: Occurrence Download

description: A dataset containing 1991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Austromyrtus (Nied.) Burret"
 ]
}

 The dataset includes 1991 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012903-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgd5cd
title: Occurrence Download

description: A dataset containing 568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa fulgens (Leech, 1888), Quasinarosa laesara Solovyev & Witt, 2009)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 568 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012902-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wu75v
title: Occurrence Download

description: A dataset containing 1130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium uliginosum L.",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1130 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012901-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kk8z8
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leistus terminatus (Panzer, 1793)",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 782 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012904-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dctx39
title: Occurrence Download

description: A dataset containing 2128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Austrosteenisia R.Geesink"
 ]
}

 The dataset includes 2128 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012905-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57724/jci_20240201_droplet_op
title: DROPLET. Occult precipitation in Maritime Antartica, 2024
DOI: 10.34740/kaggle/dsv/11831965
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.3535/r06-rmr-7k0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t0x-x4p-v69
title: Cupuladria canariensis (Busk, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jw5-a6s-kfd
title: Marattia Sw.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/55f-hp4-nyd
title: Hippoporidra Canu & Bassler, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hw4-0w8-ll0
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4en-vc3-kfq
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f60-v1v-rkl
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkg-b6s-6mq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pc2-w72-2sw
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gtv-wv7-0wl
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4dj-jqz-xf9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/995-3y3-9w5
title: Caberea boryi (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c2h-hjw-8l8
title: †Entolium membranaceum (Nilsson, 1827)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gan-7p3-z90
title: Reussirella doma (d'Orbigny, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8nh-d93-htr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fyw-1fg-b4r
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/443-0hg-hz9
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e47-rrc-0ax
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jv-twv-srd
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x5f-3z5-y2x
title: Cellaria salicornioides Lamouroux, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q9p-7z3-st5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dyc-rnt-7y5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m8x-ldf-fmz
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ak-sap-y6m
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zgp-lsq-j1e
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5xk-s8e-gjf
title: Cellaria Ellis & Solander, 1786

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f08-86l-glh
title: Stephanollona contracta (Waters, 1899)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/geg-llq-pjx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.7910/dvn/homcpt
title: Household Resilience & Food Security_Rural Bangladesh_Cross sectional Data.dta

description: This dataset contains household-level data for examining their Resilience capacity in the rural areas of Bangladesh. The original dataset is from the Bangladesh Integrated Household Survey (BIHS) data collected by IFPRI.
DOI: 10.3535/3zy-pv5-jbh
title: †Cyprimeria Conrad, 1864

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f5s-fmt-8t6
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4bs-h5b-nvt
title: Flustra Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s5a-d75-1pe
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/522-cvz-dna
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l79-y6b-7hy
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1fy-9vx-ch8
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zml-5s3-r88
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hd6-891-gnh
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ry0-a9z-yde
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txm-9zg-f8s
title: Sorex Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9q6-pav-3zq
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jan-c30-ps1
title: Dicrostonyx torquatus (Pallas, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xd2-6sf-gll
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yec-2pq-eg6
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.m2ecbh
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.41882 -34.86396,-47.58118 -34.86396,-47.58118 -22.13604,-79.41882 -22.13604,-79.41882 -34.86396))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sclerophylax trispermus Di Fulvio"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004578-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxgzue
title: Occurrence Download

description: A dataset containing 1647242805 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1647242805 records from 18535 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000901-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11582/2022.00056
title: Data analysis results for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions"

description: Data part of this archive was generated for the following publication: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions". Preprint: https://www.biorxiv.org/content/10.1101/2022.04.13.488157v2

The data analysis pipeline used to generate the data is hosted on GitHub at paulsengroup/2021-modle-paper-001-data-analysis https://github.com/paulsengroup/2021-modle-paper-001-data-analysis/tree/v2.0.1 and is also archived on Zenodo 10.5281/zenodo.7072939 https://doi.org/10.5281/zenodo.7072939.

## Testing file integrity after download
Archives have been checksummed using SHA256.
To compare checksums, run the following command:

shasum -c checksums.sha256

NOTE 1: checksums should be checked before extracting the archives
NOTE 2: use option --ignore-missing when computing checksums for a subset of the TARs


## Extracting TAR files
Archived data consists of several compressed TAR files.
Extracting all the TAR files produces the file and folder layout listed in file 2021-modle-paper-001.tree.

TAR archives are compressed using the Zstandard (ZSTD) https://facebook.github.io/zstd/ compression algorithm.

TARs can be extracted as follows:

zstd -dc --long=31 2021-modle-paper-001-data-containers.tar.zst | tar -xf -


This will create a folder named 2021-modle-paper-001 and extract the Docker image files part of the archive inside 2021-modle-paper-001/data/containers/.

NOTE: Trying to extract archives directly won't work, as TARs were compressed using custom compression options.

## Navigating archived data
Each TAR archive contains a README.md file describing the archive content.
Archive 2021-modle-paper-001-readmes.tar contains a copy of all README files (note: this archive is not compressed).

Archives also contain a checksums.sha256 file which can be used to check file integrity after extraction (this is usually not necessary).

## Contact information
Inquiries regarding this dataset should be addressed to the corresponding author for "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions" (Jonas Paulsen).
DOI: 10.25549/inscriptifact-ouc110601499
title: Persepolis Fortification Aramaic Text 436, PFAT 436

description: [Text Description:] Administrative text with seals PFATS 0414 ❧ [Text or Publication Number Note:] PFAT 436, Bowman 436 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0414 on obverse, upper edge, reverse, bottom edge. ❧ [Physical Object Note:] Damage on flat edge, round edge.
DOI: 10.25549/jarda-c75-1755
title: "Main complaint of the Japanese men is that they have nothing to do" -- caption on photograph

description: "Main complaint of the Japanese men is that they have nothing to do. Alternative is to watch someone else work. Curious groups gather wherever the white construction workers erect new buildings like this recreation hall. No Japanese labor is used here. Other Japanese men, inherently agile, stand in line to use the ping-pong table." -- caption on photograph.
DOI: 10.15468/dl.qxe9x9
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Podocarpus salignus",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 321 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027229-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110603968
title: Persepolis Fortification Aramaic Text 505, PFAT 505

description: [Text Description:] Administrative text with seals PFUTS 0109s, PFATS 0001s, illegible seal ❧ [Text or Publication Number Note:] PFAT 505, Bowman 505 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFUTS 0109s upper edge; PFATS 0001s bottom edge. Illegible seal impression reverse.
DOI: 10.25549/jarda-c75-1545
title: "Wee Ones Perform" -- caption on photograph

description: "Wee Ones Perform -- Part of the hundreds of Japanese-American youngsters who did native dances in the street during the parade through Little Tokyo here last night are shown. The parade concluded the 10th annual Nisei Week Festival." -- caption on photograph.
DOI: 10.25549/inscriptifact-ouc110601489
title: Persepolis Fortification Aramaic Text 435, PFAT 435

description: [Text Description:] Administrative text with seals PFATS 0028s ❧ [Text or Publication Number Note:] PFAT 435, Bowman 435 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0028s on reverse. ❧ [Physical Object Note:] Damage on round edge.
DOI: 10.11582/2022.00055
title: Concentration of Particulate Organic Carbon (POC) and Particulate Organic Nitrogen (PON) from the sea water and sea ice in the northern Barents Sea as part of the Nansen Legacy project, Cruise 2019706 Q3

description: This dataset includes concentrations of Particulate Organic Carbon (POC) and Particulate Organic Nitrogen (PON) from the sea water and sea ice. 

Samples were collected in August 2019 as part of cruise 2019706, Q3, in the northern Barents Sea as part of the Nansen Legacy project. 

Sea water was sampled at eight different stations using Niskin bottles attached to a rosette onboard R/V Kronprins Haakon. At three of these stations we also conducted sea ice work and sampled sea ice cores (gear: Kovacs ice corer 9cm), under-ice water (gear: Niskin bottle) from a hole in the ice and water from meltponds (gear: bucket) for POC/PON analysis. 

For sea water/meltpond water triplicate subsamples (500–2000 mL) were filtered on pre-combusted Whatman GF/F filters, the limited volume of melted sea ice allowed only one but occasionally triplicates subsamples (500-1000 mL). Filters were stored at −20 °C, and analyzed within 1 years on a CE 440 Exeter analytical CHN Analyzer according to the procedures described by Reigstad et al. (2008). Presented are averaged POC and PON values (in mg m-3), standard deviations and the C:N ratio. PON values &lt; 3x blank values were excluded from the dataset.
DOI: 10.25549/jarda-c75-1590
title: "Japanese in camps"--caption on photograph

description: This collection of photographs from the Hearst Collection of the Los Angeles Examiner in the USC Regional History Collection, documents the incarceration of Japanese Americans in California during World War II. These 222 photographs provide a glimpse into the lives of Japanese immigrants and native born Japanese Americans (a.k.a. Nisei) residing in California from 1921 to 1958, with primary emphasis on 1941-1946. Much of the coverage documents scenes of:1) the mass removal and incarceration process;2) life in camps at Manzanar, Santa Anita, Tanforan, and Tule Lake;3) post-war repatriation to Japan.The original captions from the photographs, many of which were published in the Los Angeles Examiner, have been transcribed into the Japanese American Incarceration Images, 1941-1946 to enhance subject-specific retrieval; the cultural references reflect the 1940's terminology.USC's Japanese American Incarceration Images, 1941-1946, originally known as Japanese American Relocation Digital Archive, 1941-1946 (JARDA), was funded by a grant from the Library Services and Technology Act to the California Digital Library, administered by the California State Library, as part of an initiative to assemble a statewide Japanese American Relocation Digital Archive, available at: https://cdlib.org/cdlinfo/2004/04/22/japanese-american-relocation-digital-archives-jarda-web-site-updated/. Japanese American Relocation Digital Archive includes access to more than 25 different collections from four (eventually nine) institutions. It features newly digitized photographs, documents, manuscripts, paintings, drawings, letters, oral histories, and inventories of archival collections. It will eventually bring together over 10,000 digital images and 20,000 pages of electronic transcriptions of documents and oral histories, showing daily life in the camps.Please note that this collection was originally known as the Japanese American Relocation Digital Archive, 1941-1946 (JARDA), before being changed to the Japanese American Incarceration Images, 1941-1946.
DOI: 10.25549/inscriptifact-ouc110601480
title: Persepolis Fortification Aramaic Text 435, PFAT 435

description: [Text Description:] Administrative text with seals PFATS 0028s ❧ [Text or Publication Number Note:] PFAT 435, Bowman 435 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0028s on reverse. ❧ [Physical Object Note:] Damage on round edge.
DOI: 10.25549/inscriptifact-ouc110603953
title: Persepolis Fortification Aramaic Text 505, PFAT 505

description: [Text Description:] Administrative text with seals PFUTS 0109s, PFATS 0001s, illegible seal ❧ [Text or Publication Number Note:] PFAT 505, Bowman 505 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFUTS 0109s upper edge; PFATS 0001s bottom edge. Illegible seal impression reverse.
DOI: 10.11582/2022.00054
title: Concentration of Particulate Organic Carbon (POC) and Particulate Organic Nitrogen (PON) from the sea water and sea ice in the northern Barents Sea as part of the Nansen Legacy project, Cruise 2021704 Q2

description: This dataset includes concentrations of Particulate Organic Carbon (POC) and Particulate Organic Nitrogen (PON) from the sea water and sea ice. 

Samples were collected in April-May 2021 as part of cruise 2021704, Q2, in the northern Barents Sea as part of the Nansen Legacy project. 

Sea water was sampled at seven different stations using Niskin bottles attached to a rosette onboard R/V Kronprins Haakon. At three of these stations we also conducted sea ice work and sampled sea ice cores (gear: Kovacs ice corer 9cm) and under-ice water (gear: Niskin bottle) from a hole in the ice for POC/PON analysis. 

For sea water triplicate subsamples (500–1500 mL) were filtered on pre-combusted Whatman GF/F filters, the limited volume of melted sea ice allowed only one but occasionally triplicates subsamples (200-2000 mL). Filters were stored at −20 °C, and analyzed within 1 years on a CE 440 Exeter analytical CHN Analyzer according to the procedures described by Reigstad et al. (2008). Presented are averaged POC and PON values (in mg m-3), standard deviations and the C:N ratio. PON values &lt; 3x blank values were excluded from the dataset.