cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3145744
title: The Wellcome Trust Monitor Wave 3 - Reports and infographics

description: The Wellcome Trust Monitor is a unique survey of the UK public that is conducted every three years to look at changing knowledge and attitudes to medicine, science and health. The survey covers the following topics How interested are people in science and medical research? The value of science in everyday life and informal science experiences Confidence and ability to get better health outcomes Public interest in hearing from scientists Participation in medical research What does the public know about science and medical research? The value of scientists engaging with the public What is important to the public when deciding what to eat and drink? Antibiotic resistance and the use of antibiotics Complementary and alternative medicine The full report, Executive Summary, data tables and associated infographics can all be accessed here. The full SPSS dataset for this and previous Waves can be accessed via the UK data archive.All current and previous reports can be accessed on the Wellcome Trust website. See www.welcome.ac.uk/monitor <br><br>
DOI: 10.6084/m9.figshare.3145759.v1
title: IBHphenotypes_all.txt

description: IBH phenotypes for a sample of exmoor ponies
DOI: 10.6084/m9.figshare.3145672
title: Changes in hanbaiten employment 2001-2015

description: the origin of this date is the Japan Newspaper Publishers and Editors Association website. <br> Source - http://www.pressnet.or.jp/data/employment/employment04.php <br>It describes the decline in the number of both part-time and full-time employees at newspaper distribution businesses in Japan between 2001 and 2015<br>
DOI: 10.6084/m9.figshare.3145690
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145642
title: Dichotomizing Continuous Data Which Retains Statistical Precision Using a Bayesian Distributional Approach That Reflects the True Uncertainty

description: Although dichotomization is widely criticized by statisticians, it is sometimes useful and necessary in medical research for decision-making or communication purposes. To address the issue of dichotomization, a previous literature developed an asymptotic distributional approach from a frequentist perspective assuming that the data are normally distributed and the variances in two groups are equivalent. This approach was further extended to the case of unequal variances. The previous works improve the dichotomization in many ways but assumes that the variance of data is known which does not reflect the realistic situation where both mean and variance are unknown. In this article, we develop a Bayesian distributional methodology that inherits the advantages of previous attempts but considers all levels of uncertainty. For comparison purposes, we also reframe the original asymptotic approach from a Bayesian perspective. We show through simulation studies that the Bayesian asymptotic method overestimates or underestimates the true variation under certain situations. An example of pain data is also provided to illustrate the performance of the proposed approach. The effects of unequal variances on the asymptotic method are demonstrated in the example as well. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3145642.v1
title: Dichotomizing Continuous Data Which Retains Statistical Precision Using a Bayesian Distributional Approach That Reflects the True Uncertainty

description: Although dichotomization is widely criticized by statisticians, it is sometimes useful and necessary in medical research for decision-making or communication purposes. To address the issue of dichotomization, a previous literature developed an asymptotic distributional approach from a frequentist perspective assuming that the data are normally distributed and the variances in two groups are equivalent. This approach was further extended to the case of unequal variances. The previous works improve the dichotomization in many ways but assumes that the variance of data is known which does not reflect the realistic situation where both mean and variance are unknown. In this article, we develop a Bayesian distributional methodology that inherits the advantages of previous attempts but considers all levels of uncertainty. For comparison purposes, we also reframe the original asymptotic approach from a Bayesian perspective. We show through simulation studies that the Bayesian asymptotic method overestimates or underestimates the true variation under certain situations. An example of pain data is also provided to illustrate the performance of the proposed approach. The effects of unequal variances on the asymptotic method are demonstrated in the example as well. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3145630
title: Amino acids flanking the central core of Cu,Zn superoxide dismutase are important in retaining enzyme activity after autoclaving

description: Enzymes are known to be denatured upon boiling, although Cu,Zn superoxide dismutase of <i>Potentilla atrosanguinea</i> (Pot-SOD) retains significant catalytic activity even after autoclaving (heating at 121 °C at a pressure of 1.1 kg per square cm for 20 min). The polypeptide backbone of Pot-SOD consists of 152 amino acids with a central core spanning His45 to Cys145 that is involved in coordination of Cu<sup>2+</sup> and Zn<sup>2+</sup> ions. While the central core is essential for imparting catalytic activity and structural stability to the enzyme, the role of sequences flanking the central core was not understood. Experiments with deletion mutants showed that the amino acid sequences flanking the central core were important in retaining activity of Pot-SOD after autoclaving. Molecular dynamics simulations demonstrated the unfavorable structure of mutants due to increased size of binding pocket and enhanced negative charge on the electrostatic surface, resulting in unavailability of the substrate superoxide radical () to the catalytic pocket. Deletion caused destabilization of structural elements and reduced solvent accessibility that further produced unfavorable structural geometry of the protein.
DOI: 10.6084/m9.figshare.3145630.v1
title: Amino acids flanking the central core of Cu,Zn superoxide dismutase are important in retaining enzyme activity after autoclaving

description: Enzymes are known to be denatured upon boiling, although Cu,Zn superoxide dismutase of <i>Potentilla atrosanguinea</i> (Pot-SOD) retains significant catalytic activity even after autoclaving (heating at 121 °C at a pressure of 1.1 kg per square cm for 20 min). The polypeptide backbone of Pot-SOD consists of 152 amino acids with a central core spanning His45 to Cys145 that is involved in coordination of Cu<sup>2+</sup> and Zn<sup>2+</sup> ions. While the central core is essential for imparting catalytic activity and structural stability to the enzyme, the role of sequences flanking the central core was not understood. Experiments with deletion mutants showed that the amino acid sequences flanking the central core were important in retaining activity of Pot-SOD after autoclaving. Molecular dynamics simulations demonstrated the unfavorable structure of mutants due to increased size of binding pocket and enhanced negative charge on the electrostatic surface, resulting in unavailability of the substrate superoxide radical () to the catalytic pocket. Deletion caused destabilization of structural elements and reduced solvent accessibility that further produced unfavorable structural geometry of the protein.
DOI: 10.6084/m9.figshare.3145690.v1
title: Supporting Data

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145561
title: The most ancient caviine rodent (Hystricognathi, Cavioidea) comes from the late Miocene of Northwest Argentina (South America)

description: The family Caviidae is one of the most diverse groups among South American hystricognath rodents and is represented by three main living lineages: Caviinae (cavies), Dolichotinae (maras) and Hydrochoerinae (capybaras). Caviinae includes the smaller forms of caviids represented by the extant <i>Microcavia</i>, <i>Cavia</i> and <i>Galea</i>. They are distributed in a wide range of environments throughout South America. In addition, three other genera from the late Miocene–Pliocene (<i>Dolicavia</i>, <i>Palaeocavia</i> and <i>Neocavia</i>) are recognised in high latitudes. In northwestern Argentina, the fossil forms of Caviinae have been poorly studied and for most of them there is no precise stratigraphic information. We describe and evaluate the phylogenetic affinities of the most ancient caviine from the Chiquimil Formation, Catamarca province, northwestern Argentina (9.14–7.14 ma). According to the morphological analysis of the mandibular and dental morphology and the results of the phylogenetic analysis, we assigned the new species tentatively to genus <i>Palaeocavia</i>. The phylogenetic position of the new species suggests an earlier origin for the lineage <i>Palaeocavia</i> + <i>Cavia</i> and for the entire clade Caviinae.
DOI: 10.21227/1ae5-2c30
title: CHU Surveillance Violence Detection Dataset

description: The CHU Surveillance Violence Dataset (CSVD) is a collection of CCTV footage of violent and non-violent actions aiming to characterize the composition of violent actions into more specific actions. We produced several simple action classes for violent and non-violent actions do add variety and better distribution among simple and complex action classes for RGB and Action Silhouette Videos (enhanced Optical Flow Images) with their localized actions. The dataset consists of 12 simple action classes: idle, run, walk, high-five, wave, pose, shove, grapple, punch, kick, and clobbering, which are further classified as violent or non-violent actions.
DOI: 10.6084/m9.figshare.3145561.v1
title: The most ancient caviine rodent (Hystricognathi, Cavioidea) comes from the late Miocene of Northwest Argentina (South America)

description: The family Caviidae is one of the most diverse groups among South American hystricognath rodents and is represented by three main living lineages: Caviinae (cavies), Dolichotinae (maras) and Hydrochoerinae (capybaras). Caviinae includes the smaller forms of caviids represented by the extant <i>Microcavia</i>, <i>Cavia</i> and <i>Galea</i>. They are distributed in a wide range of environments throughout South America. In addition, three other genera from the late Miocene–Pliocene (<i>Dolicavia</i>, <i>Palaeocavia</i> and <i>Neocavia</i>) are recognised in high latitudes. In northwestern Argentina, the fossil forms of Caviinae have been poorly studied and for most of them there is no precise stratigraphic information. We describe and evaluate the phylogenetic affinities of the most ancient caviine from the Chiquimil Formation, Catamarca province, northwestern Argentina (9.14–7.14 ma). According to the morphological analysis of the mandibular and dental morphology and the results of the phylogenetic analysis, we assigned the new species tentatively to genus <i>Palaeocavia</i>. The phylogenetic position of the new species suggests an earlier origin for the lineage <i>Palaeocavia</i> + <i>Cavia</i> and for the entire clade Caviinae.
DOI: 10.6084/m9.figshare.3145690.v2
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145546
title: The present-day stress field of New South Wales, Australia

description: The Australian continent displays the most complex pattern of present-day tectonic stress observed in any major continental area. Although plate boundary forces provide a well-established control on the large-scale (&gt;500 km) orientation of maximum horizontal stress (S<sub>Hmax</sub>), smaller-scale variations, caused by local forces, are poorly understood in Australia. Prior to this study, the World Stress Map database contained 101 S<sub>Hmax</sub> orientation measurements for New South Wales (NSW), Australia, with the bulk of the data coming from shallow engineering tests in the Sydney Basin. In this study we interpret present-day stress indicators analysed from 58.6 km of borehole image logs in 135 coal-seam gas and petroleum wells in different sedimentary basins of NSW, including the Gunnedah, Clarence-Moreton, Sydney, Gloucester, Darling and Bowen–Surat basins. This study provides a refined stress map of NSW, with a total of 340 (A–E quality) S<sub>Hmax</sub> orientations consisting of 186 stress indicators from borehole breakouts, 69 stress measurements from shallow engineering methods, 48 stress indicators from drilling-induced fractures, and 37 stress indicators from earthquake focal mechanism solutions. We define seven stress provinces throughout NSW and determine the mean orientation of the S<sub>Hmax</sub> for each stress province. The results show that the S<sub>Hmax</sub> is variable across the state, but broadly ranges from NE–SW to ESE–WNW. The S<sub>Hmax</sub> is approximately E–W to ESE–WNW in the Darling Basin and Southeastern Seismogenic Zone that covers the west and south of NSW, respectively. However, the present-day S<sub>Hmax</sub> rotates across the northeastern part of NSW, from approximately NE–SW in the South Sydney and Gloucester basins to ENE–WSW in the North Sydney, Clarence-Moreton and Gunnedah basins. Comparisons between the observed S<sub>Hmax</sub> orientations and Australian stress models in the available literature reveal that previous numerical models were unable to satisfactorily predict the state of stress in NSW. Although clear regional present-day stress trends exist in NSW, there are also large perturbations observed locally within most stress provinces that demonstrate the significant control on local intraplate sources of stress. Local S<sub>Hmax</sub> perturbations are interpreted to be due to basement topography, basin geometry, lithological contrasts, igneous intrusions, faults and fractures. Understanding and predicting local stress perturbations has major implications for determining the most productive fractures in petroleum systems, and for modelling the propagation direction and vertical height growth of induced hydraulic fractures in simulation of unconventional reservoirs.
DOI: 10.6084/m9.figshare.3145369
title: Data_TPLakes

description: A comprehensive and freely available data set of lakes’ status (name, location, shape, area, perimeter, etc.) over the Tibetan Plateau (TP) dating back to the 1960s, including three time series, i.e., the 1960s, 2005, and 2014, derived from ground survey (the 1960s) or high-spatial-resolution satellite images from the China-Brazil Earth Resources Satellite (CBERS) (2005) and China’s newly launched GaoFen-1 (GF-1, which means high-resolution images in Chinese) satellite (2014). The data set could provide scientists with useful information for revealing environmental change processes and mechanisms over the TP region.
DOI: 10.6084/m9.figshare.3145546.v1
title: The present-day stress field of New South Wales, Australia

description: The Australian continent displays the most complex pattern of present-day tectonic stress observed in any major continental area. Although plate boundary forces provide a well-established control on the large-scale (&gt;500 km) orientation of maximum horizontal stress (S<sub>Hmax</sub>), smaller-scale variations, caused by local forces, are poorly understood in Australia. Prior to this study, the World Stress Map database contained 101 S<sub>Hmax</sub> orientation measurements for New South Wales (NSW), Australia, with the bulk of the data coming from shallow engineering tests in the Sydney Basin. In this study we interpret present-day stress indicators analysed from 58.6 km of borehole image logs in 135 coal-seam gas and petroleum wells in different sedimentary basins of NSW, including the Gunnedah, Clarence-Moreton, Sydney, Gloucester, Darling and Bowen–Surat basins. This study provides a refined stress map of NSW, with a total of 340 (A–E quality) S<sub>Hmax</sub> orientations consisting of 186 stress indicators from borehole breakouts, 69 stress measurements from shallow engineering methods, 48 stress indicators from drilling-induced fractures, and 37 stress indicators from earthquake focal mechanism solutions. We define seven stress provinces throughout NSW and determine the mean orientation of the S<sub>Hmax</sub> for each stress province. The results show that the S<sub>Hmax</sub> is variable across the state, but broadly ranges from NE–SW to ESE–WNW. The S<sub>Hmax</sub> is approximately E–W to ESE–WNW in the Darling Basin and Southeastern Seismogenic Zone that covers the west and south of NSW, respectively. However, the present-day S<sub>Hmax</sub> rotates across the northeastern part of NSW, from approximately NE–SW in the South Sydney and Gloucester basins to ENE–WSW in the North Sydney, Clarence-Moreton and Gunnedah basins. Comparisons between the observed S<sub>Hmax</sub> orientations and Australian stress models in the available literature reveal that previous numerical models were unable to satisfactorily predict the state of stress in NSW. Although clear regional present-day stress trends exist in NSW, there are also large perturbations observed locally within most stress provinces that demonstrate the significant control on local intraplate sources of stress. Local S<sub>Hmax</sub> perturbations are interpreted to be due to basement topography, basin geometry, lithological contrasts, igneous intrusions, faults and fractures. Understanding and predicting local stress perturbations has major implications for determining the most productive fractures in petroleum systems, and for modelling the propagation direction and vertical height growth of induced hydraulic fractures in simulation of unconventional reservoirs.
DOI: 10.6084/m9.figshare.3145690.v3
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145321
title: Filtered count data for Gulf of Maine copepod time series

description: Filtered count data of copepod taxa from the Gulf of Maine collected via continuous plankton recorders from 1960-2014. Raw data downloaded from the COPEPOD database (http://www.st.nmfs.noaa.gov/copepod/)
DOI: 10.6084/m9.figshare.3145321.v1
title: Filtered count data for Gulf of Maine copepod time series

description: Filtered count data of copepod taxa from the Gulf of Maine collected via continuous plankton recorders from 1960-2014. Raw data downloaded from the COPEPOD database (http://www.st.nmfs.noaa.gov/copepod/)
DOI: 10.6084/m9.figshare.3145690.v4
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145690.v6
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145312
title: Filtered species count data for L4 Western channel data set

description: Filtered count data derived from the L4 Western channel data set. Raw data available from MG-Rast (http://metagenomics.anl.gov), project 103.
DOI: 10.6084/m9.figshare.3145690.v5
title: Lattice Boltzmann Method of Different BGA Orientations on I-Type Dispensing Method

description: This paper studies the three dimensional (3D) simulation of fluid flows through the ball grid array (BGA) to replicate the real underfill encapsulation process. LBM is used for the simulation and its results are verified with FVM simulations and experimental findings.
DOI: 10.6084/m9.figshare.3145303
title: Filtered count data for 'Moving pictures of human microbiome' set

description: Raw data is available at the MG-Rast server (http://metagenomics.anl.gov/) under project 93. Filtering was done to exclude samples with no metadata and species with fewer than 3000 observed read counts.
DOI: 10.6084/m9.figshare.3145312.v1
title: Filtered species count data for L4 Western channel data set

description: Filtered count data derived from the L4 Western channel data set. Raw data available from MG-Rast (http://metagenomics.anl.gov), project 103.
DOI: 10.6084/m9.figshare.3145240
title: echr_dataset.zip

description: European Court of Human Rights Dataset<br>Cite https://peerj.com/articles/cs-93<br>
DOI: 10.6084/m9.figshare.3145240.v1
title: echr_dataset.zip

description: European Court of Human Rights Dataset
DOI: 10.6084/m9.figshare.3145129
title: Cellular aggregation in <i>Chlamydomonas</i> (Chlorophyceae) is chimaeric and depends on traits like cell size and motility

description: How the variation in phenotypic traits like cell size and motility impacts predator-induced cellular aggregation is not known. Furthermore the genetic composition of cell groups in mixed populations of <i>Chlamydomonas</i> has not been investigated. An examination of these two questions will not only enhance our understanding of <i>Chlamydomonas</i> ecology, but also shed light on the primordial steps before integrated multicellular groups were established. Group living comes with viability and reproductive costs and it is not known how these are shared if groups are genetically heterogeneous. We observed that the natural predator <i>Peranema trichophorum</i> (Euglenoidea) induced clumping in <i>Chlamydomonas</i>. When co-cultured with <i>P. trichophorum</i> cells protected themselves by forming facultative groups (reverting back to a unicellular lifestyle once predators were removed). The dynamics of group formation in different <i>Chlamydomonas</i> species and strains correlated with cell size and swimming speed. Small or less motile strains aggregated more readily than large, fast-swimming ones. Interestingly, <i>Chlamydomonas</i> groups were both intra-species and inter-species chimaeric. This suggests that the predator-induced group formation in <i>Chlamydomonas</i> involved cells coming together rather than staying together and during aggregation cells showed little or no discrimination between self and non-self. These data demonstrate that the dynamics of cell aggregation, in unicellular volvocines at least, depends on phenotypic traits like cell size and motility and high genetic relatedness is not mandatory at this initial stage. These findings further our understanding of aggregation in mixed <i>Chlamydomonas</i> populations and have implications for understanding the very first steps on the road to simple multicellularity.