cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kh189322b
title: Social bonds, social status and survival in wild baboons: a tale of two sexes

description: People who are more socially integrated or have higher socio-economic
 status live longer. Recent studies in nonhuman primates show striking
 convergences with this human pattern: female primates with more social
 partners, stronger social bonds or higher dominance rank all lead
 longer lives. However, it remains unclear whether social environments also
 predict survival in male nonhuman primates, as it does in men. This gap
 persists because, in most primates, males disperse among social groups,
 resulting in many males who disappear with unknown fate and have unknown
 dates of birth. We present a Bayesian model to estimate the effects of
 time-varying social covariates on age-specific adult mortality in both
 sexes of wild baboons. We compare how the survival trajectories of both
 sexes are linked to social bonds and social status over the life. We find
 that, parallel to females, male baboons who are more strongly bonded to
 females have longer lifespans. However, males with higher dominance rank
 for their age appear to have shorter lifespans. This finding brings new
 understanding to the adaptive significance of heterosexual social bonds
 for male baboons: in addition to protecting the male’s offspring from
 infanticide, these bonds may have direct benefits to males themselves.
description: Please see the README.txt file contained in the zip file.
DOI: 10.5061/dryad.3r2280gc9
title: Serum levels of tau protein increase according to the severity of the injury in DAI rat model

description: Traumatic brain injury (TBI) in the form of diffuse
 axonal injury (DAI) is difficult to diagnose in the early
 phase of the injury. Early diagnosis of DAI may provide
 opportunity for developing treatment and management
 strategies. Tau protein has been demonstrated to increase in the early
 phase of TBI with high diagnostic accuracy in patients with DAI. We tested
 the biological plausibility of tau protein using a rat DAI model by
 evaluating the association between serum tau levels and the severity of
 brain injury. DAI was induced in animals using the Marmarou
 model. After a survival of 60 minutes, rats were anesthetized and
 sacrificed after obtaining blood samples (5ml) from the heart.
 Eighteen rats were employed in the
 present study and were randomly subjected to sham-operated
 control (n=4), mild DAI (n=7), and severe DAI (n=7). Of seven severe DAI
 rats, two rats that had focal injury caused by skull fracture were
 excluded in the measurement of tau protein level. The serum levels of tau
 protein in the rat DAI model were found to increase significantly and
 consistently according to the severity of the injury. Rats with
 DAI showed significantly higher serum levels of tau protein compared to
 sham rats; the severe DAI rats had higher levels of tau than moderate DAI
 and sham rats (sham vs. mild, P=0.02; mild vs.
 severe, P=0.02). In conclusion, serum tau protein levels may be
 useful as a biomarker for diagnosing and estimating the severity of DAI in
 the early phase.
DOI: 10.5061/dryad.wdbrv15jq
title: Methanotrophic bacterial symbionts fuel dense populations of deep-sea feather duster worms (Sabellida, Annelida) and extend the spatial influence of methane seepage

description: Deep-sea methane seeps are dynamic sources of greenhouse gas production
 and unique habitats supporting ocean biodiversity and productivity. Here,
 we demonstrate new animal-bacterial symbioses fueled by methane, between
 two undescribed species of annelid (a serpulid Laminatubus and sabellid
 Bispira) and distinct methane-oxidizing Methylococcales bacteria. Worm
 tissue delta 13C of -44 to -58 per mil suggested
 methane-fueled nutrition for both species and shipboard experiments
 revealed active assimilation of 13C-labelled CH4 into animal biomass,
 occurring via engulfment of methanotrophic bacteria across the host
 epidermal surface. These worms represent a new addition to the few animals
 known to intimately associate with methane-oxidizing bacteria, and further
 explain their enigmatic mass occurrence at 150-million-year-old fossil
 seeps. High-resolution seafloor surveys document significant coverage by
 these symbioses, beyond typical obligate seep fauna. These findings
 uncover novel consumers of methane in the deep-sea, and by expanding the
 known spatial extent of methane seeps, may have important implications for
 deep-sea conservation.
DOI: 10.13140/rg.2.2.18313.92009
title: Codigo para calcular los indices de tendencia del agua (Ryznar, Langelier y Puckorius) en Octave
DOI: 10.25934/pr00012550.0
title: Available datapackage for study 'Identifying Biomarker Signatures of Prognostic Value for Multisystem Inflammatory Syndrome in Children (MIS-C)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5061/dryad.37pvmcvfr
title: Cold call: the acoustic repertoire of Ross Sea killer whales (Orcinus orca, Type C) in McMurdo Sound, Antarctica

description: Killer whales (Orcinus orca) are top marine predators occurring globally.
 In Antarctic waters, five ecotypes have been described, with Type C being
 the smallest form of killer whale known. Acoustic recordings of nine
 encounters of Type C killer whales were collected in 2012 and 2013 in
 McMurdo Sound, Ross Sea. In a combined 3.5 hours of recordings, 6386
 killer whale vocalisations were detected and graded based on their
 signal-to-noise ratio. Spectrograms of the highest-quality calls were
 examined for characteristic patterns yielding a catalogue of 28 call types
 (comprising 1250 calls). Acoustic parameters of each call were measured
 and summarised by call type. Type C killer whales produced complex calls,
 consisting of multiple frequency-modulated, amplitude-modulated and pulsed
 components. Often, two components occurred simultaneously, forming a
 biphonation; although the biphonic components did not necessarily start
 and end together, with one component lasting over several others. Addition
 and deletion of components yielded call subtypes. Call complexity appears
 stable over time and may be related to feeding ecology. Characterization
 of the Type C acoustic repertoire is an important step for the development
 of passive acoustic monitoring of the diverse assemblage of killer whale
 ecotypes in Antarctica’s rapidly changing marine ecosystems.
description: Acoustic data were collected near the fast ice edge in McMurdo
 Sound, Ross Sea, Antarctica, between December 2012 and January 2013. The
 hydrophone was hand-deployed into the water at the ice edge in the
 immediate vicinity of killer whales (i.e., at &lt; 100 m range)
 approximately 3-4 m below the surface. Acoustic recordings were obtained
 using an M-Audio Microtrack 24-96 recording unit with a Lab-Core LAB-40
 hydrophone system (~5 Hz - 85 kHz bandwidth) and a 20 dB in-line
 amplifier. Sound was sampled at 96 kHz, 24 bit or 44.1 kHz, 24 bit,
 providing a bandwidth of 48 kHz and 22.05 kHz, respectively. Acoustic
 recordings were inspected both visually and aurally using acoustic
 software Raven Pro 1.5. Calls were visually graded based on their
 signal-to-noise ratio (SNR). Calls graded 2 and 3 were sorted into
 distinct categories to produce a call catalogue.
DOI: 10.5061/dryad.v6wwpzgrh
title: Gamma-gamma revisited supplementary data

description: This archive contains datasets, images, raw data-analysis results files,
 and software code listing for the analyses undertaken for the purpose of
 evaluating James A. Ford’s interpretations of his Gamma-gamma village
 archeological simulation. Results of our investigations are reported in
 full in MacLeod, N., and Nash, Brendan, S., 2021, Ford’s Gamma-Gamma
 village simulation revisited: highlighting the need for a new middle-range
 theory of archaeological types: Archaeometry, v. 63, p. 1081–1104.
description: <strong>Dataset Collection</strong>
 All data employed in this investigation were collected from the
 69 Gamma-gamma house sketches illustrated by James A. Ford (1954) and
 reproduced in Figure 1 of MacLeod and Nash (2021). 
 <strong>Data Processing</strong>
 These data (both numerical and image) were processed and analyzed
 using a variety of software written by Norman MacLeod in the Wolfram
 Mathematica™ scripting language. These routines are described in the
 Materials and Methods section of the manuscript. Listings of the code for
 these software packages can be found in the SD6 directory of this
 archive.
description: I can't think of anything anyone who wishes to repeat or
 extend the collection/analysis of these data would need to know or have in
 order to do so. However any questions are queries should be directed to NM
 at the address listed on the manuscript.
DOI: 10.5061/dryad.prr4xgxh9
title: Worldwide incidence and prevalence of NMO: A systematic review

description: Objective: Since the last epidemiologic review of neuromyelitis
 optica/neuromyelitis optica spectrum disorder (NMO/NMOSD), 22 additional
 studies have been conducted. We systematically review the worldwide
 prevalence, incidence, and basic demographic characteristics of NMOSD and
 provide a critical overview of studies. Methods: PubMed, Ovid MEDLINE, and
 Embase using Medical Subject Headings and keyword search terms and
 reference lists of retrieved articles were searched from 1999 until August
 2019. We collected data on the country; region; methods of case assessment
 and aquaporin-4 antibody (AQP4-Ab) test; study period; limitations;
 incidence (per 100,000 person-years); prevalence (per 100,000 persons);
 and age-, sex-, and ethnic group–specific incidence or prevalence.
 Results: We identified 33 relevant articles. The results indicated the
 highest estimates of incidence and prevalence of NMOSD in Afro-Caribbean
 region (0.73/100 000 person-years [95% CI: 0.45–1.01] and 10/100 000
 persons [95% CI: 6.8–13.2]). The lowest incidence and prevalence of NMOSD
 were found in Australia and New Zealand (0.037/100 000 person-years [95%
 CI: 0.036–0.038] and 0.7/100,000 persons [95% CI: 0.66–0.74]). There was
 prominent female predominance in adults and the AQP4-Ab–seropositive
 subpopulation. The incidence and prevalence peaked in middle-aged adults.
 African ethnicity had the highest incidence and prevalence of NMOSD,
 whereas White ethnicity had the lowest. No remarkable trend of incidence
 was described over time. Conclusion: NMOSD is a rare disease worldwide.
 Variations in prevalence and incidence have been described among different
 geographic areas and ethnicities. These are only partially explained by
 different study methods and NMO/NMOSD definitions, highlighting the need
 for specifically designed epidemiologic studies to identify genetic
 effects and etiologic factors.
DOI: 10.5061/dryad.djh9w0vwc
title: Synergistic impacts of co-occurring invasive grasses cause persistent effects in the soil-plant system after selective removal

description: 1. Human influence on the environment is so extensive that virtually all
 ecosystems on the planet are now affected by biological invasions. And,
 often, ecosystems are invaded by multiple co-occurring non-native species.
 Hence, it is important to understand the impacts these invasions are
 producing on biodiversity and ecosystem processes. 2. Here, we present
 results of a two-year long field experiment where we tested the effects of
 co-occurring invasive C4 African grasses in a Cerrado area in central
 Brazil. We compared plant and arthropod communities, plant biomass, and
 soil nitrogen dynamics and soil chemical characteristics across five
 experimental treatments: Urochloa decumbens removal, Melinis minutiflora
 removal, both U. decumbens, and M. minutiflora removal, U. decumbens and
 M. minutiflora invaded plots, and uninvaded Cerrado. We hypothesized that
 selective removal of invasive grasses would have distinct effects on the
 native ecosystem structure and functioning. We expected that each invasive
 grass would produce a different type of impact on the native ecosystem and
 that their impacts would be synergistic when co-occurring. 3. Removal of
 M. minutiflora doubled native plant diversity and biomass when compared to
 invaded plots, whereas removal of U. decumbens did not alter these
 parameters. Cerrado plots had four times more plant species than plots
 cleared of invasives. Removal of invasive grasses did not affect the
 species richness or community composition of soil epigeal fauna. Cerrado
 soils had lower fertility, organic matter content, and pH than invaded
 soils. The effects were generally higher when both invasive grasses were
 removed, suggesting impacts were synergistic, but M. minutiflora had
 greater effects on plants and soils than U. decumbens. Both invasive
 species produced negative impacts, but a single species was the main
 driver. We also detected persistent effects of the invasive grass species
 on the ecosystem after two years of removal. 4. We conclude that invasive
 species of the same functional group have similar types of effects in
 native ecosystems, but the magnitude of impact was largely dependent on
 invasive species biomass and cover. Where multiple invasive species are
 present, research and management of invaded ecosystems should tackle the
 interacting effects of co-occurring invaders.
description: Field experiment data. Datailed information can be found in the
 asssociated paper.
description: B or Bd = Urochloa decumbens removal treatment
 G or Mm = Melinis minutiflora removal treatment
 BG = Urochloa decumbens + Melinis minutiflora removal
 treatment Legend for datasets: Ag =
 Andropogon guayanus Hr = Hyparrhenia rufa
 D = all other plants Control = no removal
 treatment Cerrado = non-invaded plots
 t/ha = tons/hectare
DOI: 10.5061/dryad.nzs7h44n5
title: Selection for male weapons boosts female fecundity, eliminating sexual conflict in the bulb mite

description: Extreme differences between the sexes are usually explained by intense
 sexual selection on male weapons or ornaments. Sexually antagonistic
 genes, with a positive effect on male traits but a negative effect on
 female fitness, create a negative inter-sexual correlation for fitness
 (sexual conflict). However, such antagonism might not be apparent if
 sexually selected male traits are condition-dependent, and condition
 elevates female fitness. Here we reveal a surprising positive genetic
 correlation between male weaponry and female fecundity. Using mite lines
 that had previously been through 13 generations of selection on male
 weapons (fighting legs), we investigated correlated evolution in female
 fecundity. Females from lines under positive selection for weapons (up
 lines) evolved higher fecundity, despite evolving costly, thicker legs.
 This is likely because male mites have condition-dependent weaponry that
 increases our ability to indirectly select on male condition. Alleles with
 positive effects on condition in both sexes could have generated this
 correlation because: the up lines evolved a higher proportion of fighters
 and there were positive correlations between weapon size and the male
 morph and sex ratios of the offspring. This positive inter-sexual genetic
 correlation should boost the evolution of male weapons and extreme sex
 differences.
description: This file has two tabs. The first one contains the fecundity data
 (number of eggs laid in 10 days) for females after 13 generations of
 artificial selection applied on the fighter legs of fighter males of the
 mite <em>Rhizoglyphus echinopus</em>. Each row contains
 information for one female mated to two scrambler males, and the columns
 contain information about (respectively from left to right): replicate
 selection line; selection direction (up for thicker legs and down for
 thinner legs); the ID of the line (replicate and direction combined);
 family ID (the family from which each female was derived in the previous
 generation); and the number of eggs laid by this female. The other tab has
 information about sex and morph ratio through the first 9 generations of
 selection. Each row has information on the offspring of selected sires in
 each generation, and the columns contain information about (respectively
 from left to right): generation (1 to 9); replicate selection line;
 selection direction (as described above); the ID of the line (as described
 above); the ID of the particular sire; number of fighter males in that
 sire's offspring, number of females in that sire's offspring,
 number of scrambler males in that sire's offspring,  number of
 'intermorph' males (rare males with one scrambler and one
 fighter leg — they are counted as males for 'sex ratio' but
 ignored in the information for 'morph ratio') in that
 sire's offspring; and then descriptive stats based on these numbers
 (total of adults, total of males, sex ratio and morph ratio).
DOI: 10.5061/dryad.zw3r2284x
title: Developmental Cost Theory predicts thermal environment and vulnerability to global warming

description: Metazoans must develop from zygotes to feeding organisms. In doing so,
 developing offspring consume up to 60% of the energy provided by their
 parent. The cost of development depends on two rates: metabolic rate,
 which determines the rate that energy is used; and developmental rate,
 which determines the length of the developmental period. Both development
 and metabolism are highly temperature-dependent such that developmental
 costs should be sensitive to the local thermal environment. Here we
 develop, parameterise and test Developmental Cost Theory (DCT), a
 physiologically explicit theory that reveals that ectotherms have narrow
 thermal windows in which developmental costs are minimised (Topt). Our
 DCT-derived estimates of Topt predict the natural thermal environment of
 71 species across 7 phyla remarkably well (R2 ~ 0.83). DCT predicts that
 costs of development are much more sensitive to small changes in
 temperature than classic measures such as survival. Warming-driven changes
 to developmental costs are predicted to strongly affect population
 replenishment, and DCT provides a mechanistic foundation for determining
 which species are most at risk. DCT predicts tropical aquatic species and
 most non-nesting terrestrial species are likely to incur the greatest
 increase in developmental costs from future warming.
description: The data are mainly collected from a previous synthesis in
 Pettersen et al (2019) Ecology Letters. 
description: The data are in the following columns: B:
 Species name C: A temperature dependence of embryonic
 metabolic rate parameter D, E, & F: Parameters
 for describing the temperature dependence of development
 G: The calculated temperature that minimises the costs of
 development H: Minimum reported environmental
 temperature I: Maximum reported environmental
 temperature J: Mid-temperature between the minimum and
 the maximum temperature  K: Change in the costs of
 development for a 20% shift in temperature relative to the temperature
 range L: Change in survival for a 20% shift in
 temperature relative to the temperature range M:
 Curvature of the development costs relationship evaluated at the optimal
 temperature
DOI: 10.5061/dryad.7sqv9s4pd
title: Frozen verses: Antarctic minke whales (Balaenoptera bonaerensis) call predominantly during austral winter --data_minke

description: The recent identification of the bio-duck call as Antarctic minke whale
 (AMW) vocalization allows the use of passive acoustic monitoring to
 retrospectively investigate year-round spatial- temporal patterns in minke
 whale occurrence in ice-covered areas. Here, we present an analysis of AMW
 occurrence patterns based on a 9-year passive acoustic dataset (2008–
 2016) from 21 locations throughout the Atlantic sector of the Southern
 Ocean (Weddell Sea). AMWs were detected acoustically at all mooring
 locations from May to December, with the highest presence between August
 and November (bio-duck calls present at more than 80% of days). At the
 southernmost recording locations, the bio-duck call was present up to 10
 months of the year. Substantial inter-annual variation in the seasonality
 of vocal activity correlated to variation in local ice concentration. Our
 analysis indicates that part of the AMW population stays in the Weddell
 Sea during austral winter. The period with the highest acoustic presence
 in the Weddell Sea (September–October) coincides with the timing of the
 breeding season of AMW in lower latitudes. The bio-duck call could
 therefore play a role in mating, although other behavioural functions of
 the call cannot be excluded to date.
description: The acoustic data was collected using 21 hydrophones deployed
 across the Weddell Sea (HAFOs network). Data was collected between 2008
 until 2016. The sea-ice concentration data used for
 this study were extracted from satellite images with a resolution of 6.25
 × 6.25 km from the Advanced Microwave Scanning Radiometer for EOS (AMSR-E)
 satellite sensor ( Spreen G, Kaleschke L, Heygster G. 2008 Sea ice remote
 sensing using AMSR-E 89-GHz channels. J. Geophys. Res. Ocean. 113,
 C02S03). (doi:10. 1029/2005JC003384).  
description: The detection values corresponds the number of days with acoustic
 presence of AMW per month.
DOI: 10.15468/dl.8ut52d
title: Occurrence Download

description: A dataset containing 530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c2ecae57-6701-485e-9ebd-5f87b2945cb2, f9b67ad0-9c9b-11d9-b9db-b8a03c50a862, 6ea87510-0561-11d8-b851-b8a03c50a862)",
 "TaxonKey is Melanoplus bowditchi",
 "Year 1900-2026"
 ]
}

 The dataset includes 530 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002136-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.wm37pvmht
title: Distributed flux balance analysis simulations of serial biomass fermentation by two organisms

description: Intelligent biorefinery design that addresses both the composition of the
 biomass feedstock as well as fermentation microorganisms could benefit
 from dedicated tools for computational simulation and computer-assisted
 optimization. Here we present the BioLego Vn2.0 framework, based on
 Microsoft Azure Cloud, which supports large-scale simulations of biomass
 serial fermentation processes by two different organisms. BioLego enables
 the simultaneous analysis of multiple fermentation scenarios and the
 comparison of fermentation potential of multiple feedstock compositions.
 Thanks to the effective use of cloud computing it further allows resource
 intensive analysis and exploration of media and organism modifications. We
 use BioLego to obtain biological and validation results, including (1)
 exploratory search for the optimal utilization of corn biomasses – corn
 cobs, corn fiber and corn stover – in fermentation biorefineries; (2)
 analysis of the possible effects of changes in the composition of K.
 alvarezi biomass on the ethanol production yield in an anaerobic two-step
 process (S. cerevisiae followed by E. coli); (3) analysis of the impact,
 on the estimated ethanol production yield, of knocking out single organism
 reactions either in one or in both organisms in an anaerobic two-step
 fermentation process of Ulva sp. into ethanol (S. cerevisiae followed by
 E. coli); and (4) comparison of several experimentally measured ethanol
 fermentation rates with the predictions of BioLego.
description: This dataset contains supplementary information
 for the article "Distributed flux balance analysis
 simulations of serial biomass fermentation by two
 organisms"