cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/79ndd5mmnx.2
title: Eastern Arctic and Subarctic Sponge Identification - DFO Multispecies Trawl Surveys (2010-2014, 2017 and 2019)

description: Sponges (phylum Porifera) are benthic filter feeding animals that play an important role in nutrient cycling and habitat provision in the deep sea. However, despite these key functional roles, sponge communities in Arctic marine environments are still poorly known. Sponges were collected between 2010-2014, in 2017 and in 2019 during annual multispecies trawl surveys conducted by Fisheries and Oceans Canada in Baffin Bay, Davis Strait and portions of Hudson Strait. They were taxonomically examined under a microscope and it resulted in a dataset of approximately 2700 sponge specimens identified, comprising ~100 known sponge taxa. Sponges from various poescilosclerid families are described in this technical report series. For each species presented in these reports, a physical description, a discussion of their distinguishing characteristics, the dimensions and descriptions of their spicules, photos of the sponge and spicules, a map of the sampling locations, and taxonomic remarks are included. The present data package includes links to all these arctic sponge technical reports alongside the datasets of all specimens supporting the taxonomic description process.
DOI: 10.17632/mvkkzpsbgv.1
title: Leaf morphology in genus Quercus responds to climate but is modulated by phylogeny

description: We include raw data corresponding to the paper; Leaf morphology in genus Quercus responds to climate but is modulated by phylogeny.

Morphological data.xlsx: Measurements of the four quantitative traits (LA, LW, ILB and LMA) and four qualitative traits (Pubescence, Shape, Apex, Margin)
LA: Leaf Area, expressed in cm2.
LW: Lenght-Width ratio, dimensionless.
ILB: Index of Lobulation, expressed as [Perimeter/square root of Area], dimensionless.
LMA: dry Leaf Mass per Area, expresed as [dry weight/leaf area], expressed in g/m2.
Pubescence: Glabrous, Pubescent or Densely Pubescent
Shape: Elliptic, Obovate, Oblong, Lanceolate, Ovate or Circular. 
Apex: Acute, Acuminate, Rounded or Straight
Margin: Entire, Lobated, Serrate, Dentate, Undulate, Spinose or Crenate. 

Climatic data.csv: Average Worldclim variables for each species used in the climatic PCA. See https://www.worldclim.org/data/bioclim.html por further details. "bio20" was calculated ex profeso for the paper as a result of BIO16 minus BIO17.
DOI: 10.17632/mvkkzpsbgv.2
title: Oak leaf morphology is more strongly shaped by climate than by phylogeny

description: We include raw data corresponding to the paper; Oak leaf morphology is more strongly shaped by climate than by phylogeny Morphological data.xlsx: Measurements of the four quantitative traits (LA, LW, ILB and LMA) and four qualitative traits (Pubescence, Shape, Apex, Margin) LA: Leaf Area, expressed in cm2. LW: Lenght-Width ratio, dimensionless. ILB: Index of Lobulation, expressed as [Perimeter/square root of Area], dimensionless. LMA: dry Leaf Mass per Area, expresed as [dry weight/leaf area], expressed in g/m2. Pubescence: Glabrous, Pubescent or Densely Pubescent Shape: Elliptic, Obovate, Oblong, Lanceolate, Ovate or Circular. Apex: Acute, Acuminate, Rounded or Straight Margin: Entire, Lobated, Serrate, Dentate, Undulate, Spinose or Crenate. Leaf Habit: Deciduous or Evergreen Climatic data.csv: Average Worldclim variables for each species used in the climatic PCA. See https://www.worldclim.org/data/bioclim.html por further details. "bio20" was calculated ex profeso for the paper as a result of BIO16 minus BIO17.
DOI: 10.17632/ccn327m4g4.1
title: On the ability of novice modelers to identify, represent and trace strategic and tactical conceptual elements in business process and enterprise modeling

description: The appendix of the paper entitled: On the ability of novice modelers to identify, represent and trace strategic and tactical conceptual elements in business process and enterprise modeling
DOI: 10.17632/wxz33rjc7b.2
title: Asymmetries in the Episodic Encoding of Individuals' Voices

description: Analysis script and model outputs associated with the manuscript "Asymmetries in the Episodic Encoding of Individuals' Voices". Dataset is drawn from Clapp, Vaughn, & Sumner (2023), Exp. 1 and is available at https://osf.io/js3vw/. Across a set of demographically diverse talkers, findings demonstrate substantial asymmetries in the episodic encoding and recall of spoken words at the level of the individual, even in cases where talkers share demographic characteristics.
DOI: 10.17632/wxz33rjc7b.1
title: Asymmetries in the Episodic Encoding of Individuals' Voices

description: Analysis script and model outputs associated with the manuscript "Asymmetries in the Episodic Encoding of Individuals' Voices". Dataset is drawn from Clapp, Vaughn, & Sumner (2023), Exp. 1 and is available at https://osf.io/js3vw/.

Across a set of demographically diverse talkers, findings demonstrate substantial asymmetries in the episodic encoding and recall of spoken words at the level of the individual, even in cases where talkers share demographic characteristics.
DOI: 10.17632/wxz33rjc7b.3
title: Asymmetries in the Episodic Encoding of Individuals' Voices

description: Analysis script and model outputs associated with the manuscript "Asymmetries in the Episodic Encoding of Individuals' Voices". Dataset is drawn from Clapp, Vaughn, & Sumner (2023), Exp. 1 (https://doi.org/10.1016/j.jml.2022.104376), available in its original form at https://osf.io/js3vw/. Across a set of demographically diverse talkers, findings demonstrate substantial asymmetries in the episodic encoding and recall of spoken words at the level of the individual, even in cases where talkers share demographic characteristics.
DOI: 10.17632/r7rst4cb9h.1
title: "Lactate activates the mitochondrial electron transport chain independently of its metabolism​" by Cai et. al.

description: Raw western blot and GC-MS data for the submitted manuscript.
DOI: 10.17632/8mmw6wb26r.1
title: Effects of zero price and reciprocity on online consumer reviews

description: This dataset contains review behaviours of subjects upon receiving a coffee for free or for 1 cent RMB, their choices in a strategy method version of Trust Game and their attitudes toward reciprocity.
DOI: 10.17632/fcx85m7pxr.1
title: Fragility Analysis of Cable-Stayed Bridge with Various Seismic Parameters

description: Since the late 20th century, cable-stayed bridges have risen to prominence in major cities around the world. However, little work has been carried out to understand the seismic vulnerability of cable-stayed bridges. A common approach for evaluating bridge seismic vulnerability is the generation of vulnerability function in the form of fragility curves This research studies into the intricate fragility analysis of cable-stayed bridge under seismic loads, focusing on essential components such as the top pylon, mid pylon, pier, and deck. The fragility curves of each component subjected to earthquake parameters were determined. Scaling factors for 14 time histories were calculated to generate the Incremental Dynamic Analysis (IDA) curves, which were needed to develop fragility curves. The pushover analysis and Nonlinear Time History Analysis NTHA also needed to build the IDA curve. From the fragility curves, it was concluded that different bridge components have different probabilities of damage level occurrence due to specified earthquake time history parameters. By intricately examining these cases, the study offers valuable insights into the fragility characteristics of individual bridge components, essential for bolstering the resilience of cable-stayed bridges against seismic events of varying intensities.
DOI: 10.17632/5ngxkzkdp9.1
title: LLM dermatological patient handouts - supplementary data

description: Supplementary material for ChatGPT in the Clinic: Accuracy, Understandability, and Readability of Dermatological Patient Handouts Generated by Three Large-Language Models
 
Supplementary material A describes the overall analysis and outputs for the PEMAT and readability scores.

Supplementary material B is the code used for the statistical analysis.

LLM_readability_scores, PEMAT, LLM_attending_rank, rater_df, and LLM_randomization_protocol are the raw data used for analysis.

ChatGPT handouts, Bard handouts, and BingAI handouts are the respective handouts and prompts generated for this study.
DOI: 10.17632/5ngxkzkdp9.2
title: LLM dermatological patient handouts - supplementary data

description: Supplementary material for Assessment of Large Language Models to Generate Patient Handouts for the Dermatology Clinic: a single-blinded randomized study  
 
Supplementary material A describes the overall analysis and outputs for the PEMAT and readability scores.

Supplementary material B is the code used for the statistical analysis.

LLM_readability_scores, PEMAT, LLM_attending_rank, rater_df, and LLM_randomization_protocol are the raw data used for analysis.

ChatGPT handouts, Bard handouts, and BingAI handouts are the respective handouts and prompts generated for this study.
DOI: 10.17632/5ngxkzkdp9.3
title: LLM dermatological patient handouts - supplementary data

description: Supplementary material for Assessment of Large Language Models to Generate Patient Handouts for the Dermatology Clinic: a single-blinded randomized study LLM handouts methods describes the overall analysis and outputs for the PEMAT and readability scores. LLM dermatological patient handouts.R is the code used for the statistical analysis. LLM_readability_scores, PEMAT, LLM_attending_rank, rater_df, and LLM_randomization_protocol are the raw data used for analysis. Supplementary Figures 1-3: Readable versions of the data presented in graphical format for easier understanding. Supplementary Tables 1-3: ChatGPT handouts, Bard handouts, and BingAI handouts are the respective handouts and prompts generated for this study. Supplementary Table 4: A table showcasing side-by-side examples of the differences in LLM outputs. CONSORT AI checklist: CONSORT AI checklist for this study.
DOI: 10.17632/zyksyvmjpr.1
title: Dollar Invoicing, Global Value Chains, and the Business Cycle Dynamics of International Trade

description: Replication Packet for manuscript titled "Dollar Invoicing, Global Value Chains, and the Business Cycle Dynamics of International Trade" Authors: David Cook (HKUST), Nikhil Patel (IMF).
DOI: 10.17632/2h63jfn9pw.1
title: Dissecting the daily feeding pattern: peripheral CLOCK/CYCLE generate the feeding/fasting episodes and neuronal molecular clocks synchronize them

description: A 24-hour rhythm of feeding behavior, or synchronized feeding/fasting episodes during the day, is crucial for survival and maintenance of energy homeostasis. Internal clocks and light input regulate rhythmic behaviors, but how they generate feeding rhythms is not fully understood. Here we aimed to dissect the molecular pathways and components that generate daily feeding patterns. To evaluate the feeding rhythm of Drosophila melanogaster , the CAFE assay was used to measure food intake every 12 hours for 2 days. By measuring the semidiurnal amount of food ingested by single flies, we demonstrate that feeding rhythms under light:dark conditions were generated without molecular clocks, and the knockdown of quasimodo (qsm) was sufficient to disrupt it. Interestingly, rhythmic feeding patterns in constant dark conditions consist of two components: CLOCK protein (CLK) in digestive/metabolic tissues generating feeding/fasting episodes, and the molecular clock in neurons that synchronizes them to subjective daytime. Although CLK is a part of the molecular clock, the generation of feeding/fasting episodes by CLK in metabolic tissues was independent of molecular clock machinery. Our results revealed the novel function of CLK in the metabolic tissues and the critical role of qsm in feeding rhythms in Drosophila.
DOI: 10.17632/tkwzysr4y6.1
title: Prediction of Venous Thromboembolism in Diverse Populations Using Machine Learning and Electronic Health Records

description: Contains Jupyter notebooks to train, test, and analyze performance of gradient boosting models used to predict venous thromboembolism from electronic health record data.
DOI: 10.17632/tkwzysr4y6.2
title: Prediction of Venous Thromboembolism in Diverse Populations Using Machine Learning and Electronic Health Records

description: Contains Jupyter notebooks to train, test, and analyze performance of gradient boosting models used to predict venous thromboembolism from electronic health record data.
DOI: 10.17632/tkwzysr4y6.4
title: Prediction of Venous Thromboembolism in Diverse Populations Using Machine Learning and Electronic Health Records

description: Contains resources needed to train, test, and analyze performance of gradient boosting models used to predict venous thromboembolism (VTE) from electronic health record (EHR) data.

Prediction.ipynb: Contains code needed to run trained models.
Small, Medium, and Large.xlsx: Excel templates to correctly format data for prediction generation.
Models.zip: Contains trained models. Note that this is 0.4 GB once unzipped.
Analysis.ipynb: Contains code used to train the models.

Dependencies: Python 3.10.9; Pandas 1.5.1; LightGBM 3.3.2.
DOI: 10.17632/tkwzysr4y6.5
title: Prediction of Venous Thromboembolism in Diverse Populations Using Machine Learning and Electronic Health Records

description: Contains resources needed to train, test, and analyze performance of gradient boosting models used to predict venous thromboembolism (VTE) from electronic health record (EHR) data.

Prediction.ipynb: Contains code needed to run trained models.
Small, Medium, and Large.xlsx: Excel templates to correctly format data for prediction generation.
Models.zip: Contains trained models. Note that this is 0.4 GB once unzipped.
Analysis.ipynb: Contains code used to train the models.

Dependencies: Python 3.10.9; Pandas 1.5.1; LightGBM 3.3.2.
DOI: 10.17632/tkwzysr4y6.6
title: Prediction of Venous Thromboembolism in Diverse Populations Using Machine Learning and Electronic Health Records

description: Contains resources needed to train, test, and analyze performance of gradient boosting models used to predict venous thromboembolism (VTE) from electronic health record (EHR) data. "Code for analyses" folder: Contains code we used for the analyses in our paper. Prediction.ipynb: Contains code needed to run trained models. Small, Medium, and Large.xlsx: Excel templates to correctly format data for prediction generation. Models.zip: Contains trained models. Note that this is 0.4 GB once unzipped. Analysis.ipynb: Contains code used to train the models. Dependencies: Python 3.10.9; Pandas 1.5.1; LightGBM 3.3.2.
DOI: 10.17632/5d7vbdp8f7.1
title: Wind Turbine Blades Fault Diagnosis based on Vibration Dataset Analysis

description: The data collection includes uniaxial vibration measurements of wind turbine induction operating at varying wind speeds. It contains three vibration datasets of wind turbines in a healthy state and three in a problematic one. In addition, the defective circumstances of wind turbines include blade cracks, blade surface degradation, and blade imbalance. There are a total of 28 wind turbine conditions datasets. The dataset was collected at a sampling rate of 1 kHz, with 500 samples per channel.
DOI: 10.17632/5d7vbdp8f7.2
title: Wind Turbine Blades Fault Diagnosis based on Vibration Dataset Analysis

description: The data collection includes uniaxial vibration measurements of wind turbine induction operating at varying wind speeds. It contains three vibration datasets of wind turbines in a healthy state and three in a problematic one. In addition, the defective circumstances of wind turbines include blade cracks, blade surface degradation, and blade imbalance. There are a total of 28 wind turbine conditions datasets. The dataset was collected at a sampling rate of 1 kHz, with 500 samples per channel.
DOI: 10.17632/d6zpvz23t5.1
title: Western blot of DLGAP1

description: Western blot of DLGAP proteins, with the band at ~ 90 kDa corresponding to the protein product of DLGAP1-206 transcript, the band at ~ 110 KDa corresponding to that of DLGAP1-201, DLGAP3, and DLGAP4, and the band at ~120 kDa corresponding to that of DLGAP2.
DOI: 10.17632/68mcvzc9fw.1
title: Table SIII

description: Factors associated with schizophrenia and psychotic disorders (identified with French health insurance algorithm) in unadjusted, multivariate and Inverse Probability of Treatment Weighting Cox Proportional Hazards Regression Models
DOI: 10.17632/cdhdcjhxdj.1
title: Table SII

description: Factors associated with a psychotic disorder in the conventional multivariable Cox proportional hazards model in patients with psoriasis and psoriatic arthritis
DOI: 10.17632/9s4vxtzs84.1
title: The response of riverine Mg isotope to hydrology and implications for continental weathering

description: Table S1. Meteorological data, elemental and Mg-Sr isotopic compositions of stream waters; elemental concentrations of rainwaters; and Mg and Sr isotopes of the standards. Table S2. Elemental and Mg isotopic compositions of the loess and paleosol leachates
DOI: 10.17632/mh2v4pcr6v.1
title: Mental health among youth (2020-2023)

description: University of Cambridge Health Open
DOI: 10.17632/mh2v4pcr6v.2
title: Mental health among youth (2020-2023)

description: University of Cambridge Health Open
DOI: 10.17632/z3f6pm86w3.1
title: Global identification of SWI/SNF targets reveals compensation by EP400. Martin and Ablondi et al.

description: Full images for Western blots from paper: Martin BJE*, Ablondi E*, Goglia C, Mimoso CA, Espinel-Cabrera PR, Adelman K. (2023) Global identification of SWI/SNF targets reveals compensation by EP400.
DOI: 10.17632/xvk2gk4hw3.1
title: Data of Murine Trophoblast Organoids as a Model for Trophoblast Development and CRISPR/Cas9 Screening

description: Raw data for figures in Murine Trophoblast Organoids as a Model for Trophoblast Development and CRISPR/Cas9 Screening
DOI: 10.25452/figshare.plus.24272356
title: Gut microbial structural variation profile

description: Data accompanying the paper by Zhernakova <em>et al.</em> "Host Genetic Regulation of Human Gut Microbial Structural Variation", Nature 2023. We used SGV-Finder (Zeevi <em>et al.</em>, 2019) to generate SV profiles from human gut metagenomic sequencing data of 9,015 Dutch and 279 Tanzanian individuals. In total, we detected 14,196 SVs in 108 gut microbial species, including 10,265 deletion SVs and 3,931 variable SVs. File description: dSV_profile.txt.gz : deletion SV profiles vSV_profile.txt.gz : variable SV profiles. dSV_annotation.txt.gz : annotation of dSVs including taxonomy id; kbp coordinates of the SV in column "SV_ID"; and genes located in the SV vSV_annotation.txt.gz : annotation of vSVs including taxonomy id; kbp coordinates of the SV in column "SV_ID"; and genes located in the SV <em>See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.6877849</em> <strong>Funding statement</strong><br> This study is supported by Netherlands Organization for Scientific Research (NWO)-VICI grant VI.C.202.022 (J.F.), NWO-VIDI grant 016.178.056 (A.Z.), NWO-VENI grant 194.006 (D.V.Z.), NWO-VENI grant 222.016 (D.W.), European Research Council (ERC)-Consolidator grant 101001678 (J.F.), ERC Starting Grant 715772 (A.Z.), and Dutch Heart Foundation grant IN-CONTROL (CVON2018-27 to J.F., A.Z., M.G.N., L.A.B.J., J.H.W.R, N.P.R). In addition, C.W. and J.F. are supported by the Netherlands Organ-on-Chip Initiative, an NWO Gravitation project (024.003.001) funded by the Ministry of Education, Culture and Science of the government of the Netherlands. J.F. is supported by the AMMODO Science Award 2023 for Biomedical Sciences from Stichting Ammodo. A.Z. is further supported by the NWO Gravitation grant Exposome-NL (024.004.017), and EU Horizon Europe Program grant INITIALISE (101094099). The 300TZ cohort received funding from the Joint Programming Initiative, A Healthy Diet for a Healthy Life (JPI‐HDHL; project 529051018, TransMic) and ZonMw (the Netherlands Organization for Health Research and Development). S.S. is supported by Next Generation EU grant Project Age-It (DM MUR 1557 11.10.2022), ERC Starting Grant 2022 (101075624), and NutrAGE grant (DM MUR 844 16.07.2021). R.K.W. is supported by the Seerave foundation and NWO. L.L. is supported by a joint fellowship from the University Medical Center Groningen and China Scholarship Council (CSC) with grant number CSC201908320432. Y.Z. is supported by a joint fellowship from the University Medical Center Groningen and CSC with grant number CSC202006170040. N.P. is supported by a grant of the Graduate School of Medical Sciences of the University of Groningen, the Netherlands. H.P is supported by a joint fellowship from the University Medical Center Groningen and CSC with grant number CSC202208060107.
DOI: 10.17632/z7p6bnrx6x.1
title: Increasing the distance between the dermoscope and the surgical site during intraoperative dermoscopy

description: Supplemental Figures.
DOI: 10.17632/fps6fhjdy6.1
title: Photographs data for Clinical performance of light-cured orthodontic adhesives for bonding brackets – an in-vitro study.

description: Scaled digital pictures of each bracket base were photographed using Canon DSLR 1500 D camera with a 100mm macro lens to take high-resolution photos needed to score ARI . Standardized images of the bases were taken at a distance of 30 cm and an angle perpendicular bracket base, with particular attention to ensuring that each image depicts the whole bracket base and any residual adhesive. The photos were loaded onto the computer and given arbitrary numbers before being saved as digital photographs in the JPEG file format; following this, the base of the brackets with residual adhesive was scanned. An automated count of the number of pixels was performed to compute the ARI percentages using Photoshop software (Adobe Systems inc, Mountain View, calif). This software program automatically calculated the bracket base's adhesive residual surface area percentage.
DOI: 10.17632/htvvbxxps5.1
title: Vitamin D supplementation and cardiac inflammation.

description: Raw data of the clinical trial NCT03403933. We enrolled older adults scheduled for major orthopaedic surgery and suffering from hypovitaminosis D. Patients underwent 6-months calcifediol supplementation after surgery. After the normalization of low levels of vitamin D, we were able to observe a reduction of circulating TNFα and ADMA together with the amelioration of cardiac function. The dataset was used to write the article "Vitamin D, cardio-inflammation, and endothelial dysfunction in older adults after orthopedic surgery: results from an open-label trial to ameliorate cardiac function", which was published by the Journal of Nutrition clinique et métabolisme in 2020.
DOI: 10.17632/htvvbxxps5.2
title: Vitamin D supplementation and cardiac inflammation (Vitamina D; PI: M Turiel)

description: Raw data of the clinical trial NCT03403933. We enrolled older adults scheduled for major orthopaedic surgery and suffering from hypovitaminosis D. Patients underwent 6-months calcifediol supplementation after surgery. After the normalization of low levels of vitamin D, we were able to observe a reduction of circulating TNFα and ADMA together with the amelioration of cardiac function. The dataset was used to write the article "Vitamin D, cardio-inflammation, and endothelial dysfunction in older adults after orthopedic surgery: results from an open-label trial to ameliorate cardiac function", which was published by the Journal of Nutrition clinique et métabolisme in 2020.