cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-zb6-6fvq
title: AgMIP Wheat Pilot Data 4 release

description: This dataset contains the underlaying data for the study:Benchmark data set for wheat growth models: field experiments and AgMIP multi-model simulations. Open Data Journal for Agricultural Research : ODjARThe data set includes a current representative management treatment from detailed, quality-tested sentinel field experiments with wheat from four contrasting environments including Australia, The Netherlands, India and Argentina. Measurements include local daily climate data (solar radiation, maximum and minimum temperature, precipitation, surface wind, dew point temperature, relative humidity, and vapor pressure), soil characteristics, frequent growth, nitrogen in crop and soil, crop and soil water and yield components. Simulations include results from 27 wheat models and a sensitivity analysis with 26 models and 30 years (1981-2010) for each location, for elevated atmospheric CO2 and temperature changes, a heat stress sensitivity analysis at anthesis, and a sensitivity analysis with soil and crop management variations and a Global Climate Model end-century scenario.
DOI: 10.5281/zenodo.10214013
title: Killer prey: Temperature reverses future bacterial predation

description: Script and datasets for the paper "Killer prey: Temperature reverses future bacterial predation"


Prey killer.zip contains the files and code necessary to reproduce the analysis and the figures in the manuscript.
    •    All datasets, as csv files, are in the Data folder together with the README file.
    •    The Figures and Tables folders contain all figures and tables from the manuscript and SI.
    •    prey_killing_predator_script.Rmd is the script used to perform the statistical analyses and create the figures and tables.
DOI: 10.5281/zenodo.7823936
title: Killer prey: Temperature reverses future bacterial predation

description: Script and datasets for the paper "Killer prey: Temperature reverses future bacterial predation"


Prey killer.zip contains the files and code necessary to reproduce the analysis and the figures in the manuscript.
    •    All datasets, as csv files, are in the Data folder together with the README file.
    •    The Figures and Tables folders contain all figures and tables from the manuscript and SI.
    •    prey_killing_predator_script.Rmd is the script used to perform the statistical analyses and create the figures and tables.
DOI: 10.5281/zenodo.7823937
title: Killer prey: Temperature reverses future bacterial predation

description: Script and datasets for the paper "Killer prey: Temperature reverses future bacterial predation" Prey killer.zip contains the files and code necessary to reproduce the analysis and the figures in the manuscript.<br> • All datasets, as csv files, are in the Data folder together with the README file.<br> • The Figures and Tables folders contain all figures and tables from the manuscript and SI.<br> • prey_killing_predator_script.Rmd is the script used to perform the statistical analyses and create the figures and tables.
DOI: 10.5281/zenodo.8399248
title: Killer prey: Temperature reverses future bacterial predation

description: Script and datasets for the paper "Killer prey: Temperature reverses future bacterial predation"


Prey killer.zip contains the files and code necessary to reproduce the analysis and the figures in the manuscript.
    •    All datasets, as csv files, are in the Data folder together with the README file.
    •    The Figures and Tables folders contain all figures and tables from the manuscript and SI.
    •    prey_killing_predator_script.Rmd is the script used to perform the statistical analyses and create the figures and tables.
DOI: 10.17026/dans-xes-wdbf
title: Data Repository: Configuration TREYESCAN

description: In the current project we describe the configuration of the TREYESCAN eye tracking test for the measurement of compensatory eye movements, which uses an open-source toolkit for the analysis of dynamic AOIs using the Pupil Core eye tracker. The software is available on github: https://github.com/treyescan/dynamic-aoi-toolkit. This repository includes the raw eye tracking data for the pilot experiment of 20 participants measured over two sessions.
DOI: 10.17026/dans-z62-mnyp
title: Non-invasive biomechanical assessment of the prolapsed vaginal wall

description: An explorative pilot study on cutometry and indentometry
DOI: 10.17026/dans-2bd-e83h
title: Discussing depression in patients with visual impairment differs across countries: Validation of a prediction model in healthcare providers

description: Cross-sectional survey data from Welsh, Australian and Dutch healthcare providers working with adults with vision impairment were used to develop and validate a prediction model for discussing depression.
DOI: 10.17026/dans-zb2-p2h2
title: FEM growth and yield data - Poplar roadside plantations

description: This dataset contains the underlying data for the study:Vries, P.G. de, 1962. Een onderzoek naar de invloed van de boomafstand op de massaproduktie en op de vorm van de stamdoorsnede bij eenrijige populierenbeplantingen. Nederlands Bosbouwtijdschrift 34, 238-248.Jansen, J.J., 1990. Diameterbijgroei en boomafstand bij lijnvormige beplantingen van populier. In: P. Schmidt (red.), De Populier - Verslag Studiekring 1990 Koninklijke Nederlandse Bosbouw Vereniging, Nederlands Bosbouwtijdschrift 62, 231-235.The growth and yield research on poplar roadside and other line plantation was initiated by prof. dr. J.H. Becking in 1951. The project was part of a much larger series of growth and yield trials in the Netherlands with about 400 plots.During almost five decades the project was supervised by A. van Laar, P.G. de Vries, J.H. Hildebrand and H.H. Bartelink. The project stopped after measuring the last remaining stands in 1997.A revised version of this dataset has been published, see:https://doi.org/10.17026/dans-xky-zh99
DOI: 10.2909/5d5f72ce-80bc-4c90-80ed-f135596533e2
title: High Resolution Vegetation Phenology and Productivity: Normalized Difference Vegetation Index (raster 10m) - version 1 revision 1, Sep. 2021

description: This metadata refers to the Normalized Difference Vegetation Index (NDVI) dataset, one of the near real-time (NRT) Vegetation Index products of the pan-European High Resolution Vegetation Phenology and Productivity (HR-VPP), component of the Copernicus Land Monitoring Service (CLMS). The Normalized Difference Vegetation Index (NDVI) is a widely used, dimensionless vegetation index that is indicative for vegetation density. It is defined as NDVI=(NIR-Red)/(NIR+Red) where NIR corresponds to the reflectance in the near infrared band, and Red to the reflectance in the red bands. The NDVI dataset is made available as raster files with 10 x 10m resolution, in UTM/WGS84 projection corresponding to the Sentinel-2 tiling grid, for those tiles that cover the EEA38 countries and the United Kingdom and for the period from October 2016 until today, with daily updates. Each file has an associated quality indicator (QFLAG2) to assist users with the screening of clouds, shadows from clouds and topography, snow and water surfaces.
DOI: 10.17026/dans-xgy-75zq
title: Association between advanced glycation end products and sarcopenia among community-dwelling older adults in China: The mediating role of osteoporosis

description: The accumulation of AGEs in tissues has been associated with various age-related diseases. Therefore, we investigated the relationship between AGEs and sarcopenia. Additionally, we investigated the potential mediating effect of osteoporosis on this association.
DOI: 10.17026/dans-x5u-3zdf
title: PNEUMONIA DETECTION IN X-RAYS

description: ChestX-ray dataset comprises 112,120 frontal-view X-ray images of 30,805 unique patients with the text-mined fourteen disease image labels (where each image can have multi-labels), mined from the associated radiological reports using natural language processing. Fourteen common thoracic pathologies include Atelectasis, Consolidation, Infiltration, Pneumothorax, Edema, Emphysema, Fibrosis, Effusion, Pneumonia, Pleural_thickening, Cardiomegaly, Nodule and Mass and Hernia.
DOI: 10.17026/dans-x9t-rxd7
title: FEM growth and yield data monocultures - Douglas fir

description: The current database is part of the FEM growth and yield database, a collection of growth and yield data from even-aged monocultures (douglas fir, common oak, poplar, Japanese Larch, Norway spruce, Scots pine, Corsican pine, Austrian pine, red oad and several other species with only a few plots, even-aged mixed species forest plots, uneven-aged natural forest, uneven-aged selection forest and roadside plantations of poplar). The FEM growth and yield data base is currently supervised bu Jan den Ouden and Frits Mohren.
DOI: 10.17026/dans-28j-zw6x
title: Activity Painter Data

description: Reconstructed dcm files of the so called Activity Painter phantom and the controlling program code.The main objective of the paper is to present a novel method which can produce arbitrary irregular shaped distributions of activity concentrations in the field of view of a PET scanner by using a point source that is moved by a precise robotic system.
DOI: 10.17026/dans-29t-bqju
title: The decline in physical activity in aging people is not modified by gender or the presence of cardiovascular disease

description: In this study, we investigated if the association between aging and physical inactivity was different between menand women and between primary and secondary prevention patients. We performed a cross-sectionalanalysis of three primary care samples including primary and/or secondary prevention patients (total n = 4726). The raw data of the samples are attached. Baseline data for sample 1 were collected in the years 2013–14, for sample 2 in 2009–10 and for sample 3 in 2009. Activity levels were measured by the patient reported Rapid Assessment of Physical Activity questionnaire. Amultilevel regression analysis was used to explore the association between aging and physical inactivity, adjusted for confounders. We examined potential effect modification by gender and the presence of CVD on the association between aging and physical inactivity. In the READ_ME_FIRST file we summarized the Methods section as well as the best fitting model that we used for the analysis. Moreover, we added the full text_paper.
DOI: 10.17026/dans-zvn-xhm8
title: Low Anterior Resection Syndrome - Persian

description: Dataset of Translation, Validation and Psychometric Evaluation of the Persian (Farsi) version of the Low Anterior Resection Syndrome Score
DOI: 10.17026/dans-zg7-b7sw
title: Applicability of a keratinocyte gene signature to predict skin sensitizing potential

description: The human keratinocyte cell line HaCaT were exposed in vitro for 4 h to skin irritating compounds, skin sensitizing compounds, or vehicle controls. Gene expression changes were determined by Affymetrix microarray analysis.
DOI: 10.17026/dans-z5e-qerx
title: Segmental induction heating of orthopaedic metal implants.

description: Non-contact induction heating of metal implants is a new and emerging treatment for prosthetic joint infection (PJI). However, there is a risk of tissue necrosis with current induction heating delivery systems.This study investigated whether segmental induction heating can be used to control the thermal dose and to limit collateral thermal injury.Infrared imaging was used to estimate the thermal dose for different metal implants (hip stem, intramedullary nail, and locking compression plate (LCP)) at various distances from the heating centre (HC).
DOI: 10.17026/dans-25b-q829
title: High-resolution Contrast-enhanced Vessel Wall Imaging in Patients with Suspected Cerebral Vasculitis: Prospective Comparison of Whole-brain 3D T1 SPACE versus 2D T1 black blood MRI at 3 Tesla

description: Vessel wall imaging (VWI) using T1 dark blood MRI can depict inflammation of intracranial arteries in patients with cerebral vasculitis. Recently, 3D VWI sequences were introduced at 3 Tesla. We aimed to compare 2D and 3D VWI for detection of intracranial vessel wall enhancement (VWE) in patients suspected of cerebral vasculitis.
DOI: 10.17026/dans-2zt-8adt
title: The importance of significant others in the prevention of suicidality

description: Uit de literatuur blijkt dat jaarlijks er ruim 400.000 mensen in Nederland zijn die denken aan zelfmoord. In de meeste gevallen worden deze gedachten gedeeld met direct naastbetrokkenen die hulp bieden om het contact met hulpverlening te zoeken. Naasten zijn vaak bereid zijn om zelf steun te bieden aan een suïcidaal persoon. De multidisciplinaire richtlijn diagnostiek e behandeling suïcidaal gedrag beveelt aan naasten te betrekken aar zegt niet hoe. Daarom heeft GGZ-Rivierduinen in samenwerking met het Leids Universitair Medisch Centrum, onderzoek gedaan naar de noden, wensen en behoeften van naasten én cliënten tijdens een suïcidale crisis. Uit dit onderzoek is een psycho-educatieve cursus voor naasten van suïcidale cliënten ontwikkeld die in de praktijk is getoetst. Een van de belangrijkste uitkomsten daarbij was dat naasten zeer blij zijn met het aanbod en de cursus waardeerden met een 8.3. Inmiddels is een implementatie subsidie ontvangen om de cursus in Nederland verder te implementeren.
DOI: 10.17026/dans-xwv-mhsv
title: Eenjes et al, AJP-LCMB, Supplementary figures and tables

description: Supplementary Figures and Tables for AJP-LCMB manuscript Eenjes et al, submitted on May 19, 2020:Evelien Eenjes, Sander van Riet, Andre A. Kroon, Annelies M. Slats, Irwin K.M. Reiss, Hans Clevers, Robbert J. Rottier, Pieter S. Hiemstra Disease modelling following organoid-based expansion of airway epithelial cells
DOI: 10.17026/dans-zb5-2hfg
title: Data chart: Intraprofessional workplace learning in postgraduate medical education: a scoping review

description: BackgroundResidents need to be trained across the boundaries of their own specialty to prepare them for collaborative practice. Intraprofessional learning (i.e. between individuals of different disciplines within the same profession) has received little attention in the postgraduate medical education literature, in contrast to the extensive literature on interprofessional learning between individuals of different professions. To address this gap, we performed a scoping review to investigate what and how residents learn from workplace-related intraprofessional activities, and what factors influence learning.MethodsThe PRISMA guidelines were used to conduct a scoping review of empirical studies on intraprofessional workplace learning in postgraduate medical education published between 1 January 2000 to 16 April 2020 in Pubmed, Embase, PsycINFO, ERIC and Web of Science.Inclusion criteria: focus on intraprofessional learning (i.e. the learning that occurs when two or more disciplines of the same profession engage), involves primary and/or secondary care postgraduate medical trainees, workplace learning: incidental and informal, intentional non-formal, and/or formal, contains empirical evidence from qualitative, quantitative or mixed methods studies, published in a peer-reviewed journal.Exclusion criteria: does not meet inclusion criteria of focus on intraprofessional learning, primary and/or secondary care postgraduate medical trainees and workplace learning, grey literature, reviews, commentaries, book, papers only describing curricula (no empirical data), publication before 2000, written in another language than English, unable to retrieve abstract or full-text paper.4330 records were screened, and finally 37 articles were included.The data was extracted using a data extraction chart. The collected data includes: article characteristics, study characteristics (study type, study design), participant characteristics (professions and specialties involved, sample size), characteristics of the intraprofessional workplace learning activity (type of workplace learning, description of the learning activity, learner role, supervision, duration and frequency), and learning outcomes.
DOI: 10.17026/dans-279-er9g
title: CNN-Based Myoelectric Control

description: The evolution of deep learning techniques has been transformative as they have allowed complex mappings to be trained between control inputs and outputs without the need for feature engineering. In this work, a myoelectric control system based on convolutional neural networks (CNN) is proposed as a possible alternative to traditional approaches that rely on specifically designed features. This CNN-based system is validated using a real-time Fitts’ law style target acquisition test requiring single and combined wrist motions. The performance of the proposed system is then compared to that of a standard support vector machine (SVM) based myoelectric system using a set of time-domain features. Despite the prevalence and demonstrated performance of these well-known features, no significant difference (p&gt;0.05) was found between the two methods for any of the computed control metrics. This demonstrates the potential for automated learning approaches to extract complex and rich information from stochastic biological signals. This first evaluation of the usability of a CNN in a real-time myoelectric control environment provides a basis for further exploration.
DOI: 10.5281/zenodo.10068633
title: Craters in Historical Aerial Images (CHAI) Dataset

description: This dataset contains 99 aerial images from Austria and Germany from 1943 - 1945. There are three versions of the dataset: CHAI-raw, CHAI-full, and CHAI-light. The CHAI-raw contains the original 99 historical aerial images with a Region of Interest (ROI) mask as well as the crater annotations. CHAI-full and CHAI-light are the derived datasets that were used for the evaluation of the paper "CHAI: Craters in Historical Aerial Images" presented at WACV2024. For both datasets we extracted 960×960 patches with an overlap of 20%, both come with the images in .png format and the train, val, and test as .json files in the COCO style. The difference between the CHAI-full and CHAI-light datasets is that for the light version, all patches without any annotations have been removed, which results in the same amount of annotations, but fewer patches.
Technical Details
CHAI-raw contains all images unnormalized, additionally, the -info.csv contains the GSD in m, the -mask.png contains the region of interest (only in which craters were annotated), as well as the craters.csv and craters-manual-adapted.csv, which contain the craters and the manually refined craters, details can be found in the original publication. For ease of use, please consider using the derived datasets, which were used for the evaluation of our paper:Will be linked once published.
Please cite the WACV paper when publishing results on these datasets.
Access
If you would like to request access to these files, please fill out the form below.
You need to satisfy these conditions in order for this request to be accepted:
The dataset is freely available for non-commercial research use. In order to get access to the dataset you have to fill in and sign the usage agreement form and send it to Marvin Burges.
DOI: 10.17026/dans-z44-2z4d
title: Repeated-batch food waste fermentation for n-caproate production with reduced hydroxide use and no external electron donor addition

description: Fed-batch food waste fermentation was done without pH control for n-caproate production in an open microbiome. Acidification was steered towards lactate and, subsequently, chain elongation to n-butyrate and n-caproate was observed. Lactate was a key electron donor and its consumption during chain elongation helped to reduce the chemicals use for pH control.
DOI: 10.5281/zenodo.10068632
title: Craters in Historical Aerial Images (CHAI) Dataset

description: This dataset contains 99 aerial images from Austria and Germany from 1943 - 1945. There are three versions of the dataset: CHAI-raw, CHAI-full, and CHAI-light. The CHAI-raw contains the original 99 historical aerial images with a Region of Interest (ROI) mask as well as the crater annotations. CHAI-full and CHAI-light are the derived datasets that were used for the evaluation of the paper "CHAI: Craters in Historical Aerial Images" presented at WACV2024. For both datasets we extracted 960×960 patches with an overlap of 20%, both come with the images in .png format and the train, val, and test as .json files in the COCO style. The difference between the CHAI-full and CHAI-light datasets is that for the light version, all patches without any annotations have been removed, which results in the same amount of annotations, but fewer patches.
Technical Details
CHAI-raw contains all images unnormalized, additionally, the -info.csv contains the GSD in m, the -mask.png contains the region of interest (only in which craters were annotated), as well as the craters.csv and craters-manual-adapted.csv, which contain the craters and the manually refined craters, details can be found in the original publication. For ease of use, please consider using the derived datasets, which were used for the evaluation of our paper:Will be linked once published.
Please cite the WACV paper when publishing results on these datasets.
Access
If you would like to request access to these files, please fill out the form below.
You need to satisfy these conditions in order for this request to be accepted:
The dataset is freely available for non-commercial research use. In order to get access to the dataset you have to fill in and sign the usage agreement form and send it to Marvin Burges.
DOI: 10.17026/dans-xym-nu36
title: Engineering Dynamic Surface Peptide Networks on ButyrylcholinesteraseG117H for Enhanced Organophosphate Catalysis

description: 24 movies (in Quicktime .mov format) of the following MD simulations are provided. These simulations are for the enzyme 6 versions of enzyme BChE-G117H (BChE-G117H and BChE-G117H) with loop mutations: ENA/G/I/R/T) in complex with one of these substrates: BChE, paraoxon, DFP or EthP.Description for the movies: The enzyme structure is shown as gray cartoon, the engineered loop in red, with substrate and key residues displayed as sticks. The substrate is shown green sticks, catalytic triad as cyan carbon sticks, and H117 as magenta sticks. The duration of simulations was 200 nanoseconds.‘***Forthcoming publication: The paper related to this data set will be published soon.
DOI: 10.17026/dans-xbu-pjsh
title: Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering

description: Peronospora effusa (previously known as P. farinosa f. sp. spinaciae, and here referred to as Pfs) is an obligate biotrophic oomycete that causes downy mildew on spinach (Spinacia oleracea). To get insight into the gene repertoire of Pfs and identify infection-related genes, the genome of the first reference race, Pfs1, was sequenced, assembled, and annotated. To filter and obtain Pfs sequences we utilized the CAT tool to taxonomically annotate ORFs residing on long sequences of a genome pre-assembly. Filtered reads were re-assembled to provide a clean and improved Pfs genome sequence of 32.40 Mbp consisting of 8,635 scaffolds. Transcript sequencing of a range of infection time points aided the prediction of a total of 13,277 gene models, including 99 RXLR(-like) effector, and 14 putative Crinkler genes. The genome of Pfs1 will be instrumental in studying downy mildew virulence and for understanding the molecular adaptations by which new isolates break spinach resistance.
DOI: 10.17026/dans-z2r-hnfa
title: Vragenlijst COVID-19 spoedprocedure toetsingscommissies

description: Evaluatie spoedprocedure beoordeling COVID-19 onderzoek door toetsingscommissies.