cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/usctheses-ouc11214788
title: Microsoft Word - Yue Ling_Relationship of Body Mass and BMI to Cognitive Change Final Version.docx
DOI: 10.25549/usctheses-c40-510648
title: Tampoon
DOI: 10.25549/usctheses-c40-510658
title: In camera: a video practice of living, learning and connecting
DOI: 10.25549/usctheses-c40-510635
title: Modular cinema: multi-screen aesthetics and recombinatorial narrative
DOI: 10.6084/m9.figshare.14776502.v1
title: The guiding value of microvascular invasion for treating early recurrent small hepatocellular carcinoma

description: Hepatocellular carcinoma (HCC) patients with microvascular invasion (MVI) have worse survival. Whether the presence of MVI indicates the necessity of more aggressive locoregional treatments for recurrences remains to be elucidated. We reviewed patients who underwent curative hepatectomy for primary HCC in our institution, and 379 patients with recurrent HCC up to three nodules smaller than 3 cm were enrolled. The Kaplan–Meier method was adopted to compare the secondary recurrence-free survival (sRFS) and post-recurrence survival (PRS) among patients undergoing hepatectomy, RFA and transarterial chemoembolization plus RFA (TACE-RFA). Cox regression analyses were performed to identify independent prognostic factors. Both the sRFS and PRS of the MVI (−) group were significantly longer than those of the MVI (+) group (<i>p</i> = 0.001 and 0.011). For patients with MVI (−), no significant difference was found in sRFS or PRS among recurrent HCC patients receiving hepatectomy, RFA or TACE-RFA (<i>p</i> = 0.149 and 0.821). A similar trend was found in patients with MVI (+) (<i>p</i> = 0.851 and 0.960). Further analysis found that TACE-RFA provided better sRFS than hepatectomy or RFA alone in patients with MVI (+) and early recurrence within two years (<i>p</i> = 0.036 and 0.044). For HCC patients with MVI (+) and early small recurrence, TACE-RFA could achieve better prognosis than hepatectomy or RFA alone, while RFA alone provided comparable survival benefits compared with hepatectomy or TACE-RFA in other HCC patients with small recurrence.
DOI: 10.6084/m9.figshare.7436540
title: DEGs in transcriptome of virulent CN-Bx1 and avirulent US-Bx1. from Enhancement of oxidative stress contributes to increased pathogenicity of the invasive pine wood nematode.

description: Reactive oxygen species (ROS) play important roles in defence response of host plants versus pathogens. While generation and detoxification of ROS is well understood, how varied ability of different isolates of pathogens to overcome host ROS, or ROS contribution to a particular isolate's pathogenicity, remains largely unexplored. Here, we report that transcriptional regulation of ROS pathway, in combination with the insulin pathway, increases the pathogenicity of invasive species <i>Bursaphelenchus xylophilus</i>. The results showed a positive correlation between fecundity and pathogenicity of different nematode isolates. The virulent isolates from introduced populations in Japan, China and Europe had significantly higher fecundity than native avirulent isolates from the USA. Increased expression of <i>Mn-SOD</i> and reduced expression of <i>catalase</i>/<i>GPX-5</i> and H<sub>2</sub>O<sub>2</sub> accumulation during invasion are associated with virulent strains. Additional H<sub>2</sub>O<sub>2</sub> could improve fecundity of <i>B. xylophilus</i>. Furthermore, depletion of <i>Mn-SOD</i> decreased fecundity and virulence of <i>B. xylophilus</i>, while insulin pathway is significantly affected. Thus, we propose that destructive pathogenicity of <i>B. xylophilus</i> to pines is partly due to upregulated fecundity modulated by insulin pathway in association with ROS pathway and further enhanced by H<sub>2</sub>O<sub>2</sub> oxidative stress. These findings provide a better understanding of pathogenic mechanisms in plant–pathogen interactions and adaptive evolution of invasive species.This article is part of the theme issue ‘Biotic signalling sheds light on smart pest management’.
DOI: 10.6084/m9.figshare.7436540.v1
title: DEGs in transcriptome of virulent CN-Bx1 and avirulent US-Bx1. from Enhancement of oxidative stress contributes to increased pathogenicity of the invasive pine wood nematode

description: Reactive oxygen species (ROS) play important roles in defence response of host plants versus pathogens. While generation and detoxification of ROS is well understood, how varied ability of different isolates of pathogens to overcome host ROS, or ROS contribution to a particular isolate's pathogenicity, remains largely unexplored. Here, we report that transcriptional regulation of ROS pathway, in combination with the insulin pathway, increases the pathogenicity of invasive species <i>Bursaphelenchus xylophilus</i>. The results showed a positive correlation between fecundity and pathogenicity of different nematode isolates. The virulent isolates from introduced populations in Japan, China and Europe had significantly higher fecundity than native avirulent isolates from the USA. Increased expression of <i>Mn-SOD</i> and reduced expression of <i>catalase</i>/<i>GPX-5</i> and H<sub>2</sub>O<sub>2</sub> accumulation during invasion are associated with virulent strains. Additional H<sub>2</sub>O<sub>2</sub> could improve fecundity of <i>B. xylophilus</i>. Furthermore, depletion of <i>Mn-SOD</i> decreased fecundity and virulence of <i>B. xylophilus</i>, while insulin pathway is significantly affected. Thus, we propose that destructive pathogenicity of <i>B. xylophilus</i> to pines is partly due to upregulated fecundity modulated by insulin pathway in association with ROS pathway and further enhanced by H<sub>2</sub>O<sub>2</sub> oxidative stress. These findings provide a better understanding of pathogenic mechanisms in plant–pathogen interactions and adaptive evolution of invasive species.This article is part of the theme issue ‘Biotic signalling sheds light on smart pest management’.
DOI: 10.6084/m9.figshare.14776526
title: Additional file 10 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 10: Table S8. Annotations of genes co-expressed with Gh_A05G0714.
DOI: 10.6084/m9.figshare.14776526.v1
title: Additional file 10 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 10: Table S8. Annotations of genes co-expressed with Gh_A05G0714.
DOI: 10.6084/m9.figshare.23682138.v1
title: Additional file 1 of Chorionicity-associated variation in metabolic phenotype of cord blood in twin

description: Supplementary Material 1 Table 1: Identified metabolites
DOI: 10.6084/m9.figshare.14776553
title: Additional file 5 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 5: Table S3. Counts of differentially-expressed PCGs and lncRNAs under four stress treatments.
DOI: 10.6084/m9.figshare.14776562
title: Additional file 8 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 8: Table S6. Expression, conservation level, and associated phenotype of lncRNAs subjected to VIGS.
DOI: 10.6084/m9.figshare.14776556.v1
title: Additional file 6 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 6: Table S4. Expression of adjacent PCG-lncRNA pairs and adjacent PCG- PCG pairs.
DOI: 10.6084/m9.figshare.14776559
title: Additional file 7 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 7: Table S5. Expression of adjacent C-lncRNA-PCG and NC-lncRNA-PCG pairs.
DOI: 10.6084/m9.figshare.23682286
title: Additional file 1 of HER2-low breast cancer: evolution of HER2 expression from primary tumor to distant metastases

description: Additional file 1. Literature on HER2 (all scores) changes between primary tumors and metastases [39–47].
DOI: 10.6084/m9.figshare.14776528.v1
title: Additional file 2 of Positive natural selection of N6-methyladenosine on the RNAs of processed pseudogenes

description: Additional file 2: Table S1. The list of pseudogenes and their cognate protein-coding genes. Table S2. The m6A levels of pseudogenes and their cognate protein-coding genes in GM12878 cell line. Table S3. The m6A levels of pseudogenes and their cognate protein-coding genes in H1 cell line. Table S4. The primers of processed pseudogenes (DSTNP2; NAP1L4P1) and their cognate protein-coding genes (DSTN; NAP1L4). Table S5. The list of collected GEO datasets. Table S6. The list of collected EBI datasets.
DOI: 10.6084/m9.figshare.7436540.v2
title: DEGs in transcriptome of virulent CN-Bx1 and avirulent US-Bx1. from Enhancement of oxidative stress contributes to increased pathogenicity of the invasive pine wood nematode.

description: Reactive oxygen species (ROS) play important roles in defence response of host plants versus pathogens. While generation and detoxification of ROS is well understood, how varied ability of different isolates of pathogens to overcome host ROS, or ROS contribution to a particular isolate's pathogenicity, remains largely unexplored. Here, we report that transcriptional regulation of ROS pathway, in combination with the insulin pathway, increases the pathogenicity of invasive species <i>Bursaphelenchus xylophilus</i>. The results showed a positive correlation between fecundity and pathogenicity of different nematode isolates. The virulent isolates from introduced populations in Japan, China and Europe had significantly higher fecundity than native avirulent isolates from the USA. Increased expression of <i>Mn-SOD</i> and reduced expression of <i>catalase</i>/<i>GPX-5</i> and H<sub>2</sub>O<sub>2</sub> accumulation during invasion are associated with virulent strains. Additional H<sub>2</sub>O<sub>2</sub> could improve fecundity of <i>B. xylophilus</i>. Furthermore, depletion of <i>Mn-SOD</i> decreased fecundity and virulence of <i>B. xylophilus</i>, while insulin pathway is significantly affected. Thus, we propose that destructive pathogenicity of <i>B. xylophilus</i> to pines is partly due to upregulated fecundity modulated by insulin pathway in association with ROS pathway and further enhanced by H<sub>2</sub>O<sub>2</sub> oxidative stress. These findings provide a better understanding of pathogenic mechanisms in plant–pathogen interactions and adaptive evolution of invasive species.This article is part of the theme issue ‘Biotic signalling sheds light on smart pest management’.
DOI: 10.6084/m9.figshare.14776550.v1
title: Additional file 4 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 4: Table S2. List of C-lncRNAs in GhDT and corresponding syntenic lncRNA in Gr.
DOI: 10.6084/m9.figshare.23682276
title: Additional file 2 of BMP4 upregulates glycogen synthesis through the SMAD/SLC2A1 (GLUT1) signaling axis in hepatocellular carcinoma (HCC) cells

description: Additional file 2: Fig. S1. The original images of WB in Figs. 2, 3, 5 and 6. Fig. S2. A The expression of BMP4 and SLC2A1 in Lo2, Huh7, MHCC 97H, HepG2 and Hep3B were assessed by Western blotting. B Huh7 and HepG2 were infected with Ad-B4, Ad-GFP, Ad-siB4 or Ad-RFP, respectively, and fluorescence images were taken at 36h. C Huh7 and HepG2 were infected with Ad-B4, Ad-GFP, Ad-siB4 or Ad-RFP respectively, and TqPCR analysis was used to evaluate the expression of SLC2A1, SLC2A2, SLC2A3 and SLC2A4 at 24h and 48h. “**” P &lt; 0.01, “*” P &lt; 0.05, Ad-B4 group vs Ad-GFP group, Ad-siB4 group vs Ad-RFP group. D Huh7 and HepG2 were treated with 1μm BAY-876 or equal volume DMSO respectively, and TqPCR analysis was used to evaluate the expression of SLC2A1, SLC2A2, SLC2A3 and SLC2A4 at 36h. “**” P &lt; 0.01, “*” P &lt; 0.05, BAY-876 group vs DMSO group. Fig. S3. The graphic abstract of this research.
DOI: 10.6084/m9.figshare.23682273
title: Additional file 1 of BMP4 upregulates glycogen synthesis through the SMAD/SLC2A1 (GLUT1) signaling axis in hepatocellular carcinoma (HCC) cells

description: Additional file 1: Table S1. BMP4 and SLC2A1 IHC score results. Table S2. List of TqPCR primers. Table S3. List of PCR primers for ChIP assay.
DOI: 10.6084/m9.figshare.14776556
title: Additional file 6 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 6: Table S4. Expression of adjacent PCG-lncRNA pairs and adjacent PCG- PCG pairs.
DOI: 10.6084/m9.figshare.14776565
title: Additional file 9 of Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

description: Additional file 9: Table S7. Annotations of genes co-expressed with Gh_A08G1105.
DOI: 10.15156/bio/sh0915184.10fu
title: SH0915184.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915185.10fu
title: SH0915185.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915186.10fu
title: SH0915186.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915187.10fu
title: SH0915187.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915188.10fu
title: SH0915188.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915189.10fu
title: SH0915189.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915190.10fu
title: SH0915190.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915191.10fu
title: SH0915191.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915192.10fu
title: SH0915192.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0915193.10fu
title: SH0915193.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.