cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8c65s/2
title: Success of honeyguide-human interactions

description: Column descriptions: GuidingEventID: unique identifier for each guiding event, defined as a bout of guiding by an individual honeyguide. Success: whether or not the guiding event led to a bees' nest being found by the human followers (yes/no). Nests: how many bees' nests were found. BeeSpecies: the bee species to which the nest(s) belonged (sometimes &gt;1 if &gt;1 nest was found).Notes: (1) Guiding events accompanied by a non-natural acoustic cue, and guiding events that led to a bees' nest already known to the observers, are excluded (see Materials and Methods). (2) "Stingless bee sp." refers to an unidentified species; see Materials and Methods.
DOI: 10.5061/dryad.8c65s/3
title: Bees' nests found

description: Column descriptions: Date: date on which the bees' nests was found (dd/mm/yy). Latitude: latitude of the bees' nest (d.ddddd). Longitude: longitude of the bees' nest (d.ddddd). Honeyguide: whether the nest was found with the help of a honeyguide (Yes) or without the help of a honeyguide (No). BeeSpecies: the bee species to which the nest belonged. Note: "Stingless bee sp." refers to an unidentified species; see Materials and Methods.
DOI: 10.5061/dryad.8c65s/4
title: Distance travelled to bees' nests shown by a honeyguide

description: Column descriptions: GuidingEventID: unique identifier for each guiding event, defined as a bout of guiding by an individual honeyguide. Start_Latitude: latitude of point where the honeyguide was detected starting guiding behaviour (d.ddddd). Start_Longitude: longitude of point where the honeyguide was detected starting guiding behaviour (d.ddddd). Bees_Latitude: latitude of bees' nest (d.ddddd). Bees_Longitude: longitude of bees' nest (d.ddddd). Distance: distance from point where the honeyguide was detected starting guiding behaviour, to bees' nest (m). Note: Guiding events sometimes led to more than one bees’ nest, but only the journey to the first bees' nest was analysed here.
DOI: 10.5061/dryad.8c65s/5
title: Honeyguide initial flight direction relative to bees' nest direction

description: Column descriptions: GuidingEventID: unique identifier for each guiding event, defined as a bout of guiding by an individual honeyguide, sometimes to more than one bees’ nest. Bearing_Bees: bearing (angle in degrees) from the point where the honeyguide was detected starting guiding behaviour, to the bees' nest. Bearing_40m: bearing (angle in degrees) from the point where the honeyguide was detected starting guiding behaviour, to the point reached after the first 40 m of travel. Bearing_Difference: Bearing_40m relative to Bearing_Bees, with the latter set at zero (angle in degrees). Note: Guiding events accompanied by a non-natural acoustic cue, and guiding events that led to a bees' nest already known to the observers, are excluded (see Materials and Methods).
DOI: 10.5061/dryad.8c65s/6
title: Experimental honey-hunting forays

description: Column descriptions: TransectID: unique identifier for each transect. Latitude: latitude of transect start point (d.ddddd). Longitude: longitude of transect start point (d.ddddd). Date: date on which the transect took place (dd/mm/yy). Time: time at which the transect started (hh:mm). AM/PM: whether the transect took place in the morning (AM) or afternoon (PM). Time_Sun: time at which the transect start measured in minutes from sunrise for morning transects, or to sunset for afternoon transects (h.hh). Temperature: measured at end of transect (degrees Celsius). Treatment: acoustic playback treatment type. Treatment_subtype: playback subtype for control playbacks. ExemplarID: unique identifier for each individual person or bird recorded as an exemplar. ExemplarMax30: maximum amplitude of playback exemplar recorded at 30 metres (dBA). ExemplarMean30: mean amplitude of playback exemplar recorded at 30 metres (dBA). ExemplarLength: length of playback exemplar (s.ss). Guided: whether a honeyguide initiated guiding behaviour (Yes/No). Bees: whether a bees' nest was found with a honeyguide's help (Yes/No). Distance_searched: linear distance from the point where the honeyguide was detected starting guiding behaviour, to the point where either bees' nest found or honey-hunters decided to stop searching (m).
DOI: 10.5061/dryad.8c65s/7
title: Amplitudes of experimental playback sounds

description: Column descriptions: ExemplarID: unique identifier for each individual bird or human who provided recordings. Treatment: acoustic playback treatment type. Treatment_subtype: playback subtype for control playbacks. ExemplarMax3: maximum amplitude of playback exemplar recorded at 3 metres (dBA). ExemplarMean3: mean amplitude of playback exemplar recorded at 3 metres (dBA). ExemplarMax30: maximum amplitude of playback exemplar recorded at 30 metres (dBA). ExemplarMean30: mean amplitude of playback exemplar recorded at 30 metres (dBA). ExemplarLength: length of playback exemplar (s.ss).
DOI: 10.5061/dryad.8kn73/10
title: Code used to generate figures and statistics

description: This archive should be unzipped in the same folder as the data files. The file README.org contains the code used to generate the statistics in the paper and was used to generate the README.html files associated with the rest of the submission.
DOI: 10.5061/dryad.8kn73/2
title: Raw Tecan Sunrise growth curve data
DOI: 10.5061/dryad.8kn73/3
title: Strains identified as sensitive to heat stress
DOI: 10.5061/dryad.8kn73/4
title: Mitochondrial morphology scoring
DOI: 10.5061/dryad.8kn73/5
title: Mitochondrial morphology plus TrackScar
DOI: 10.5061/dryad.8kn73/6
title: Mapping from PMY to YJM strain numbers
DOI: 10.5061/dryad.8kn73/7
title: Three color TrackScar data
DOI: 10.5061/dryad.8kn73/8
title: Two color TrackScar timeseries data
DOI: 10.5061/dryad.8kn73/9
title: Two color TrackScar data
DOI: 10.5061/dryad.c937h/1
title: Duet codes H for R

description: Raw data of indices of diversity for established and new pairs
DOI: 10.5061/dryad.c937h/2
title: H index by date

description: Diversity indices through time
DOI: 10.5061/dryad.c937h/3
title: Duet codes sharing o good for R

description: Phrase sharing between old and new mates E2
DOI: 10.5061/dryad.c937h/4
title: randomization results

description: Overlap indices raw data
DOI: 10.5061/dryad.c937h/5
title: repsizefor r

description: Individual repertoire sizes pre and post mate removal
DOI: 10.5061/dryad.c937h/6
title: old vs new coordination

description: Overlap indices of established vs new pairs
DOI: 10.5061/dryad.dk563/1
title: microsatellite raw scoring

description: Column names: Pop= population code; ID= sample unique identifier; col 2 to 8 = marker names. Pop codes: CG= Capo Gallo, CR= Crotone, OT= Otranto, PA= Palermo (Altavilla), PP= Portopalo, SC= Sciacca (Mazara), TU=Torre Uluzzo,  SE=Sant'Elia
DOI: 10.5061/dryad.g8c91/1
title: Time to extinction in deteriorating environments data

description: The data file contains the code for the three models described in the article Time to extinction in deteriorating environments. These models were solved using the adaptivetau package in R. Additionally, the file contains the data and code for the five figures in the publication.
DOI: 10.5061/dryad.j38b7/1
title: Dryad BioLINCC Survey Data 16-09-01

description: This is the deidentified data from the 2015 cross-sectional survey of investigators who requested and received access to clinical research data from BioLINCC between 2007 and 2014.
DOI: 10.5061/dryad.j38b7/2
title: Data Dictionary BioLINCC Survey 16-09-01

description: This file lists and describes the variables from the 2015 cross-sectional BioLINCC survey.
DOI: 10.5061/dryad.j647p/1
title: DATA ARCHIVE ANCHOVY STANDARD LENGTH

description: Data include: 1) The measurements of the anchovy used for the allometric regressions (training set)2) The measurements of the anchovy in the test set.3) The measurements of the anchovy measured from photos and regurgitates at Robben Island and from Seal Island.
DOI: 10.5061/dryad.j647p/2
title: DATA ARCHIVE PHOTO-SAMPLE & REGURGITATIONS

description: This file include: The ordered list of species in the photo samples from Observer A and B and Seal Island and the ordered list of species in the regurgitation in both Robben Island and Seal Island.
DOI: 10.5061/dryad.j647p/3
title: List of species recorded

description: List of species recorded using photo-sampling method in Robben Island (2013-2015)
DOI: 10.5061/dryad.m35k6/105
title: ModelSel_PSFL_2013_Dynamic

description: AIC model selection table and associated coefficients for Pacific-slope flycatcher 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/106
title: ModelSel_RBNU_2012_Dynamic

description: AIC model selection table and associated coefficients for red-breasted nuthatch 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/107
title: ModelSel_RBNU_2013_Dynamic

description: AIC model selection table and associated coefficients for red-breasted nuthatch 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/108
title: ModelSel_STJA_2012_Dynamic

description: AIC model selection table and associated coefficients for Steller’s jay 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/109
title: ModelSel_STJA_2013_Dynamic

description: AIC model selection table and associated coefficients for Steller’s jay 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/110
title: ModelSel_SWTH_2012_Dynamic

description: AIC model selection table and associated coefficients for Swainson’s thrush 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/111
title: ModelSel_SWTH_2013_Dynamic

description: AIC model selection table and associated coefficients for Swainson’s thrush 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/112
title: ModelSel_VATH_2012_Dynamic

description: AIC model selection table and associated coefficients for varied thrush 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m9p07/1
title: avibaseline_PLOS

description: Grassland bird data and vegetation data files
DOI: 10.5061/dryad.m9p07/2
title: Ingula vegtn transects 2006,2007,2010_PLOS2016
DOI: 10.5061/dryad.mt6m0/1
title: BIOM OTU table – All life stages

description: OTU table in BIOM format of all life stages of the blacklegged tick (Ixodes scapularis)
DOI: 10.5061/dryad.mt6m0/2
title: BIOM OTU table – Female organs

description: OTU table in BIOM format of female organs (salivary glands and midgut) of the blacklegged tick (Ixodes scapularis)
DOI: 10.5061/dryad.mt6m0/3
title: JPLACE tree file of Rickettsia EPA

description: Annotated tree in JPLACE format of Rickettsia short sequences and reference longer sequences.
DOI: 10.5061/dryad.qm130/1
title: Rhynchosporium comparative genomics

description: The folder contains fasta files alon with mas-, meg- and mts-files (generated with the phylogenetic analysis software MEGA 6.06) for the phylogenies shown in Figs. 2, 3, 7, 8, 9, 11 and S1.
DOI: 10.5061/dryad.sp5dp/1
title: Tree species abundances, soil variables and topographical data

description: The file contains the species abundance and environmental data for each inventory plot.
DOI: 10.5061/dryad.t92g5/1
title: MHC Expression

description: Data on the myosin heavy chain expression of white-crowned sparrow during spring migration.
DOI: 10.5061/dryad.v033k/5
title: castanotum_EBSP

description: EBSP xml infile for Cinclosoma castanotum run in Beast v1.7.5. EBSP run uses mtDNA rate and one nuclear loci.  This was chosen based on locus closest to average of all loci.  All loci (except one) are within the bounds of the Ellegren (2013) Annual Review of Ecology and Systematics. The one outside is only a tiny fraction lower.
DOI: 10.5061/dryad.v033k/6
title: clarum_noST_SB_EBSP

description: EBSP xml infile for Cinclosoma clarum (putative Cinclosoma clarum fordianum removed) run in Beast v1.7.5. EBSP run uses mtDNA rate and one nuclear loci.  This was chosen based on locus closest to average of all loci.  All loci (except one) are within the bounds of the Ellegren (2013) Annual Review of Ecology and Systematics. The one outside is only a tiny fraction lower.
DOI: 10.5061/dryad.v5h24/1
title: SCBI_tree_mortality_2014
DOI: 10.5061/dryad.v5h24/2
title: SCBI_tree_mortality_2015
DOI: 10.5061/dryad.223p4/10
title: 2014_Germination

description: Data on whether seeds from crosses made within and between dune and non-dune ecotypes  (in the greenhouse in 2014) germinated
DOI: 10.5061/dryad.223p4/11
title: Hybrid_pollen

description: Data on the viability of pollen produced by dune, non-dune and hybrid plants
DOI: 10.5061/dryad.223p4/12
title: 2014_Seed_Size_Common_Garden

description: The weight of seeds produced by dune and non-dune maternal plants pollinated with dune and non-dune pollen
DOI: 10.5061/dryad.223p4/13
title: 2010_RT

description: The number of seedlings that emerged in each subplot of our 2010 reciprocal transplant in which we planted dune, non-dune and intermediate (collected at the boundary between dune and non-dune habitat) seeds into a site in the dunes and a site in the non-dune habitat (sand sheet) at Great Sand Dunes National Park and Preserve.
DOI: 10.5061/dryad.223p4/14
title: 2010_RT_long

description: Data (emergence, survival, height, number of flowers, head diameter) for each seed planted in our 2010 reciprocal transplant
DOI: 10.5061/dryad.223p4/15
title: 2011_RT

description: The number of seedlings that emerged in each subplot of our 2011 reciprocal transplant in which we planted dune and non-dune seeds into a site in the dunes and a site in the non-dune habitat (sand sheet) at Great Sand Dunes National Park and Preserve.
DOI: 10.5061/dryad.223p4/7
title: 2014_PCO_genoytpes_full

description: The number of offspring with particular genotypes (NN, NC or CC) that resulted from pollinations with mixtures of dune and non-dune pollen (dune pollen contributes "C" alleles and non-dune pollen contributes "N" alleles)
DOI: 10.5061/dryad.223p4/8
title: 2014_Seed_set

description: The number of seeds set after pollinating 30 stigmas on dune and non-dune maternal plants with either dune pollen or non-dune pollen
DOI: 10.5061/dryad.223p4/9
title: 2014_PCO_6and12_genotypes

description: The number of offspring fathered by dune or non-dune pollen after different pollination treatments (1 = dune pollen applied 12 hours before non-dune pollen, 2 = dune pollen applied 6 hours before non-dune pollen, 3 = dune and non-dune pollen applied together, 4 = non-dune pollen applied 6 hours before dune pollen, 5 = non-dune pollen applied 12 hours before dune pollen)
DOI: 10.5061/dryad.4085r/1
title: Script for stochastic character mapping

description: This R script was used for stochastic character mapping of the resistance mutations. It relies on phytools and data files (character states and a tree) that are included in this submission.
DOI: 10.5061/dryad.4085r/2
title: Reistance mutation character state

description: This matrix provides the mutation state for each snake species (NA for missing data). Resistance mutations are encoded with 1, and the non-resistant mutation with 0. The two data columns give the two mutations in order.
DOI: 10.5061/dryad.4085r/3
title: Nucleotide mutation matrix

description: This matrix provides the mutation state for each snake species (NA for missing data), but here the two different resistance mutations (A to G vs. A to C) at codon 120 are considered separately. Specifically, resistance mutations are encoded with 1 or 2 (2 only applies to codon 120), and the non-resistant mutation with 0. The two data columns give the two mutations in order
DOI: 10.5061/dryad.4085r/4
title: Phylogenetic tree

description: This is the tree we used for the analyses. This tree was originally published by Zhen and Weins (2016), and is simply included here to ensure our analyses can be recreated from the data on Dryad.
DOI: 10.5061/dryad.5880j/1
title: Medicago SNP genotypes

description: This file contains ~26000 SNPs for 190 Medicago truncatula accessions.  There are two lines for each accession representing both strands of DNA, allowing for the identification of heterozygotes.  Accessions are labeled by number within collection site.  GPS coordinates and information on the collection sources are indicated in online Supplemental Table 1.
DOI: 10.5061/dryad.5880j/2
title: Medicago SNP position

description: This file contains the chromosomal location and physical position of the Medicago truncatula SNPs.
DOI: 10.5061/dryad.6sg82/1
title: AuldetalData
DOI: 10.5061/dryad.760b3/1
title: Longleaf pine biomass data
DOI: 10.5061/dryad.760b3/2
title: Longleaf pine carbon data
DOI: 10.5061/dryad.7ff11/1
title: core 1

description: Core 1 LOI, XRF
DOI: 10.5061/dryad.7ff11/2
title: core 2

description: Core 2 LOI, XRF
DOI: 10.5061/dryad.7ff11/3
title: core 3

description: Core 3 LOI, XRF
DOI: 10.5061/dryad.7ff11/4
title: core 4

description: Core 4 LOI, XRF
DOI: 10.5061/dryad.8br5c/1
title: Sanger_sequence_data

description: Sequencher v4.7 (Gene Codes Corp., Ann Arbor, MI) was used to analyze data quality, trim primer sequences, produce alignments and call heterozygous sites to produce these fasta files, including alignments from Gottscho et al. (2014). See Appendix A for specimen information.
DOI: 10.5061/dryad.8br5c/2
title: PHASE

description: PHASE v2.1 (Stephens et al. 2001) and seqPHASE (Flot 2010) were used to determine haplotypes; input and output files provided.
DOI: 10.5061/dryad.8br5c/3
title: Geneland

description: Included are input files, R scripts and output files for an analysis of 10 Sanger loci in the R package Geneland v4.0.3 (Guillot 2008; Guillot et al. 2005, 2008).
DOI: 10.5061/dryad.8gg57/1
title: A_adults.adjusted

description: Transition matrix with observed adult dispersal adjusted for habitat-specific imperfect detection
DOI: 10.5061/dryad.8gg57/2
title: A_adults

description: Transition matrix with observed adult dispersal
DOI: 10.5061/dryad.8gg57/3
title: A_females

description: Transition matrix with observed adult female dispersal
DOI: 10.5061/dryad.b34s4/1
title: ML gene tree of astacins from Arachnida taxa

description: Nexus file including the DNA multiple alignment of astacins across 243 terminals, and the respective ML gene tree.
DOI: 10.5061/dryad.c937h/7
title: Coordination E1

description: Temporal coordination Experiment 1
DOI: 10.5061/dryad.c937h/8
title: Answer proportion E1

description: Proportion of phrases answered across treatments E1
DOI: 10.5061/dryad.c937h/9
title: R code Supplementary document

description: R code used for both experiments
DOI: 10.5061/dryad.cd5s5/1
title: microsatellite genotypes for all individuals

description: Microsatellite genotypes for 7 loci for all 70 individuals of leafy seadragons (Phycodurus eques) in genepop format.