cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/z7deg-s0948
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-15/rawdata/</p>11feb16a_WTCampy_145.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-15/rawdata/11feb16a_WTCampy_145.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_145_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 1.8 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ddkrm-00e57
title: Project: peptidoglycan

description: Session notes: First round of data collection on intact sacculi Tilt series notes: notes Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2008-12-05</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor2</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-12-05-4/rawdata/</p>08dec05a_grid1_017.mrc,  Tilt Series (Pixel Size 0.782 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-12-05-4/rawdata/08dec05a_grid1_017.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec05a_grid1_017_full_RAPTOR.rec,  Reconstruction (Pixel Size 1.564 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4vjxv-v9q84
title: Project: storage_granules

description: Session notes: Tilt series of R. eutropha storage granules from cells grown for 9hrs in minimal media then mildly lysed. Tilt series notes: Intact cell and isolated granule? Tomogram notes: Isolated granules n
description: <strong>Tilt Series Date:</strong> 2009-03-27</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1.5°, constant angular increment, dosage: 40.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-27-26/rawdata/</p>09mar27b_b401_2b_008.mrc,  Tilt Series (Pixel Size 0.632 nm), 687.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar27b_b401_2b_008_full.rec,  Reconstruction (Pixel Size 1.264 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zrq4c-0mf16
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-82/rawdata/</p>11feb16a_WTCampy_063.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-82/rawdata/11feb16a_WTCampy_063.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_063_bin1x_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 209.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t20kf-9m564
title: Salmonella typhimurium

description: Session notes: T3SS minicells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-26-22/rawdata/</p>11aug26a_fliL_0014.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11aug26a_fliL_0014.rec,  Reconstruction (Pixel Size 1.024 nm), 412.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.z4paus
title: Occurrence Download

description: A dataset containing 4145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is United States of America",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Alces alces",
 "Year 1970-2025"
 ]
}

 The dataset includes 4145 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033293-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/mrqy9-y0z12
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-09</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-37/rawdata/</p>12mar09b_fliL_0037.st,  Tilt Series (Pixel Size 0.512 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-37/rawdata/12mar09b_fliL_0037.st"
        > <i class="download icon"></i> Download </a></p>

        12mar09b_fliL_0037.rec,  Reconstruction (Pixel Size 1.036 nm), 65.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2nt7h-vm305
title: Campylobacter jejuni

description: Session notes: Campy cjj0413, filtered 0.28,0.02 after binning to pixel size 1.56 nm (so, ~5.5nm cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-01-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-7/rawdata/</p>12jan12a_cjj0413_0001.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-7/rawdata/12jan12a_cjj0413_0001.st"
        > <i class="download icon"></i> Download </a></p>

        12jan12a_cjj0413_0001.rec,  Reconstruction (Pixel Size 0.78 nm), 67.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-7/3dimage_21197/12jan12a_cjj0413_0001.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ty6yxb
title: Occurrence Download

description: A dataset containing 4290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Formicidae",
 "GadmGid is one of (IND.32_1, IND.2_1, IND.26_1, IND.31_1)"
 ]
}

 The dataset includes 4290 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033292-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ckmvc-n2n88
title: Campylobacter jejuni

description: Session notes: Campy cjj0413, filtered 0.28,0.02 after binning to pixel size 1.56 nm (so, ~5.5nm cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-01-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-20/rawdata/</p>12jan12a_cjj0413_0023.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-01-12-20/rawdata/12jan12a_cjj0413_0023.st"
        > <i class="download icon"></i> Download </a></p>

        12jan12a_cjj0413_0023.rec,  Reconstruction (Pixel Size 0.78 nm), 49.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hvyjc-3xr95
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-156/rawdata/</p>11feb16a_WTCampy_031.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-156/rawdata/11feb16a_WTCampy_031.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_031_bin2x_SIRT.rec,  Reconstruction (Pixel Size 1.024 nm), 27.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/g1ph1-1ph22
title: Project: storage_granules

description: Session notes: THIS IS A MIXTURE OF DIFFERENT SETTINGS! Tilt series notes: Very large granules Tomogram notes: Very large granules. Views 1-30 from tilt series were ommitted due to bubbling, markedly reducing quality of tomogram.
description: <strong>Tilt Series Date:</strong> 2009-04-07</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-04-07-3/rawdata/</p>09apr07a_grid1_005.st,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09apr07a_grid1_005.rec,  Reconstruction (Pixel Size 1.9 nm), 156.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n32nv-z0k96
title: Vibrio fischeri

description: Session notes: Vibrio fischeri WT flagella, binned 4x total then filtered 0.28 (= 4.6nm resolution cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-17</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Vibrio fischeri</p>
<strong>Strain:</strong> ES114</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-17-24/rawdata/</p>11dec17c_WTVFischeri_0012.st,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11dec17c_WTVFischeri_0012.rec,  Reconstruction (Pixel Size 0.644 nm), 145.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ta1cn-y0977
title: Campylobacter jejuni

description: Session notes: Campy flhBc cells, CTF-corrected then filtered at second zero (0.35, 0.05)... first zero should be around 0.14 Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-02-01</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-02-01-1/rawdata/</p>12feb01a_flhBc_0009.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-02-01-1/rawdata/12feb01a_flhBc_0009.st"
        > <i class="download icon"></i> Download </a></p>

        12feb01a_flhBc_0009.rec,  Reconstruction (Pixel Size 0.08667 nm), 952.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fbjcq-qfh77
title: Campylobacter jejuni

description: Session notes: flgP deletion Campy mutants Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-10</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-14/rawdata/</p>11aug10a_flgP_0017.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11aug10a_flgP_0017_bin2x_SIRT_trim.rec,  Reconstruction (Pixel Size 1.024 nm), 33.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/m1cxz-zvq20
title: Salmonella typhimurium

description: Session notes: Salmonella fliHIJ knockout minicells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-04</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-04-11/rawdata/</p>11feb04d_cartridge4_025.mrc,  Tilt Series (Pixel Size 0.774 nm), 981.5 MB  
        
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        11feb04d_cartridge4_025_full.rec,  Reconstruction (Pixel Size 1.548 nm), 838.9 MB  
        
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DOI: 10.22002/vchhe-z3q18
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-117/rawdata/</p>11feb16a_WTCampy_022.st,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
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        11feb16a_WTCampy_022_bin1x_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 216.0 MB  
        
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