cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6816785
title: Drug-county deviance matrix for all males.

description: This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 3138 counties, for all males in the data. This was calculated and presented in the same way as the corresponding file for females. This data was used to create supplementary figure 13.
DOI: 10.6084/m9.figshare.6816785.v1
title: Drug-county deviance matrix for all males.

description: This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 3138 counties, for all males in the data. This was calculated and presented in the same way as the corresponding file for females. This data was used to create supplementary figure 13.
DOI: 10.6084/m9.figshare.6816782
title: Drug-state deviance matrix for all females.

description: This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 50 states plus DC, for all females in the data. This was used to create figure 1b and supplementary figures 2c,d and 6d. The deviance scores are calculated as described in the Methods section of the text. The states are indicated by their standard abbreviations and the drugs are indicated by their generic name from the RED Book.
DOI: 10.6084/m9.figshare.6816782.v1
title: Drug-state deviance matrix for all females.

description: This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 50 states plus DC, for all females in the data. This was used to create figure 1b and supplementary figures 2c,d and 6d. The deviance scores are calculated as described in the Methods section of the text. The states are indicated by their standard abbreviations and the drugs are indicated by their generic name from the RED Book.
DOI: 10.6084/m9.figshare.6815996
title: Locomotor performance and survivorship in juvenile and adult Eastern cottontail rabbits (Sylvilagus floridanus)

description: Data are from a long-term study of musculoskeletal growth, locomotor performance, and survivorship in Eastern Cottontail Rabbits (Sylvilagus floridanus). Locomotor performance data include mean acceleration achieved over single half-bounding strides from a standing start, escape speeds (i.e., final velocity at the end of the stride), and mean COM power during the strides, and stroke duration (duration of hindlimb contact). Data were quantified using a combination of 3D video-based kinematics and force plate recordings. Survivorship data include peak acceleration and escape speed per individual, and duration of survivorship following release into the wild after locomotor testing.
DOI: 10.6084/m9.figshare.6815996.v1
title: Locomotor performance in juvenile and adult Sylvilagus floridanus

description: Data are from a long-term study of musculoskeletal growth, locomotor performance, and survivorship in Eastern Cottontail Rabbits (Sylvilagus floridanus). Data include mean acceleration achieved over single half-bounding strides from a standing start, ground reaction force magnitudes for these strides, and peak COM power during these strides. Data were quantified using a combination of 3D video-based kinematics and force plate recordings.
DOI: 10.6084/m9.figshare.6815945
title: Earth Analytics Python | Colorado Flood Teaching Subset

description: This is a teaching data subset that contains Data from the 2013 Colorado Floods. Data included:<br>1. Precipitation and stream discharge data covering the time period of the flood2. lidar data - pre and post flood collected by NEON and RGB imagery<br>
DOI: 10.6084/m9.figshare.6815996.v2
title: Locomotor performance, survivorship, and related functional morphology of juvenile and adult Sylvilagus floridanus

description: Data are from a long-term study of musculoskeletal growth, locomotor performance, and survivorship in Eastern Cottontail Rabbits (Sylvilagus floridanus). Locomotor performance data include mean acceleration achieved over single half-bounding strides from a standing start, ground reaction force magnitudes for these strides, and peak COM power during these strides. Data were quantified using a combination of 3D video-based kinematics and force plate recordings. Survivorship data include peak acceleration per individual, age at capture, and age at death. EMA (effective mechanical advantage) data include measures effective mechanical advantage at the hip, knee and ankle joints during half-bounding strides (measured at the moment that the resultant ground reaction force reached its peak). Finally, fiber type data include counts of various slow and fast myosin heavy chain isoform fiber types in hindlimb extensor muscles in juvenile and adult rabbits.
DOI: 10.6084/m9.figshare.6815996.v4
title: Locomotor performance and survivorship in juvenile and adult Eastern cottontail rabbits (Sylvilagus floridanus)

description: Data are from a long-term study of musculoskeletal growth, locomotor performance, and survivorship in Eastern Cottontail Rabbits (Sylvilagus floridanus). Locomotor performance data include mean acceleration achieved over single half-bounding strides from a standing start, escape speeds (i.e., final velocity at the end of the stride), and mean COM power during the strides, and stroke duration (duration of hindlimb contact). Data were quantified using a combination of 3D video-based kinematics and force plate recordings. Survivorship data include peak acceleration and escape speed per individual, and duration of survivorship following release into the wild after locomotor testing.
DOI: 10.6084/m9.figshare.6815996.v3
title: Locomotor performance, and survivorship in juvenile and adult Eastern cottontail rabbits (Sylvilagus floridanus)

description: Data are from a long-term study of musculoskeletal growth, locomotor performance, and survivorship in Eastern Cottontail Rabbits (Sylvilagus floridanus). Locomotor performance data include mean acceleration achieved over single half-bounding strides from a standing start, escape speeds (i.e., final velocity at the end of the stride), and mean COM power during the strides, and peak COM power during these strides. Data were quantified using a combination of 3D video-based kinematics and force plate recordings. Survivorship data include peak escape speed per individual, duration of survivorship following release into the wild after locomotor testing, and season of capture.
DOI: 10.6084/m9.figshare.6815945.v1
title: Earth Analytics Python | Colorado Flood Teaching Subset

description: This is a teaching data subset that contains Data from the 2013 Colorado Floods. Data included:<br>1. Precipitation and stream discharge data covering the time period of the flood2. lidar data - pre and post flood collected by NEON and RGB imagery<br>
DOI: 10.6084/m9.figshare.6815945.v2
title: Earth Analytics Python | Colorado Flood Teaching Subset

description: This is a teaching data subset that contains Data from the 2013 Colorado Floods. Data included:<br>1. Precipitation and stream discharge data covering the time period of the flood2. lidar data - pre and post flood collected by NEON and RGB imagery<br>
DOI: 10.6084/m9.figshare.6815945.v3
title: Earth Analytics Python | Colorado Flood Teaching Subset

description: This is a teaching data subset that contains Data from the 2013 Colorado Floods. Data included:<br>1. Precipitation and stream discharge data covering the time period of the flood2. lidar data - pre and post flood collected by NEON and RGB imagery<br>
DOI: 10.6084/m9.figshare.6815831
title: Drug-county deviance matrix for all females.

description: This is the main data set used for the analyses in the paper. This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 3138 counties, for all females in the data. The deviance scores are calculated as described in the Methods section of the text. The counties are indicated by their FIPS identifier and the drugs are indicated by their generic name from the RED Book.
DOI: 10.6084/m9.figshare.6815831.v1
title: Drug-county deviance matrix for all females.

description: This is the main data set used for the analyses in the paper. This is a tab-delimited text file containing the deviance values summarizing use of each of 1103 drugs in 3138 counties, for all females in the data. The deviance scores are calculated as described in the Methods section of the text. The counties are indicated by their FIPS identifier and the drugs are indicated by their generic name from the RED Book.
DOI: 10.6084/m9.figshare.6815780
title: Inhibiting autophagy reduces retinal degeneration caused by protein misfolding

description: Mutations in the genes necessary for the structure and function of vertebrate photoreceptor cells are associated with multiple forms of inherited retinal degeneration. Mutations in the gene encoding RHO (rhodopsin) are a common cause of autosomal dominant retinitis pigmentosa (adRP), with the Pro23His variant of RHO resulting in a misfolded protein that activates endoplasmic reticulum stress and the unfolded protein response. Stimulating macroautophagy/autophagy has been proposed as a strategy for clearing misfolded RHO and reducing photoreceptor death. We found that retinas from mice heterozygous for the gene encoding the RHO<sup>P23H</sup> variant (hereafter called P23H) exhibited elevated levels of autophagy flux, and that pharmacological stimulation of autophagy accelerated retinal degeneration. In contrast, reducing autophagy flux pharmacologically or by rod-specific deletion of the autophagy-activating gene <i>Atg5</i>, improved photoreceptor structure and function. Furthermore, proteasome levels and activity were reduced in the P23H retina, and increased when <i>Atg5</i> was deleted. Our findings suggest that autophagy contributes to photoreceptor cell death in P23H mice, and that decreasing autophagy shifts the degradation of misfolded RHO protein to the proteasome and is protective. These observations suggest that modulating the flux of misfolded proteins from autophagy to the proteasome may represent an important therapeutic strategy for reducing proteotoxicity in adRP and other diseases caused by protein folding defects.
DOI: 10.6084/m9.figshare.6815756
title: Koutsidi_Moukas_Tzanatos_Table_S2.xls

description: Koutsidi_Moukas_Tzanatos_Table_S2: The competition between 205 species of Mediterranean fisheries resources examined, specifically for (a) habitat use, (b) spawning habitat use, and (c) food resources of mature stages. Species occurring in the same habitat (Posidonia beds, coralligene formations, lagoons) according to the cited sources are considered as competitors for the specific resource. The excel file has 3 worksheets: (1) habitat_use: This worksheet contains the 205 species examined, sorted by the modalities of the traits (depth, habitat type, seabed type) relevant to habitat use. (2) adult_food: This worksheet contains the 205 species examined, sorted by the modalities of the traits (maximum length, trophic level, feeding type) relevant to the use of food resources by mature fish. (3) spawning_habitat: This worksheet contains the 205 species examined, sorted by the modalities of the traits (spawning period, spawning habitat) relevant to spawning habitat use.<br>
DOI: 10.6084/m9.figshare.6815780.v2
title: Inhibiting autophagy reduces retinal degeneration caused by protein misfolding

description: Mutations in the genes necessary for the structure and function of vertebrate photoreceptor cells are associated with multiple forms of inherited retinal degeneration. Mutations in the gene encoding RHO (rhodopsin) are a common cause of autosomal dominant retinitis pigmentosa (adRP), with the Pro23His variant of RHO resulting in a misfolded protein that activates endoplasmic reticulum stress and the unfolded protein response. Stimulating macroautophagy/autophagy has been proposed as a strategy for clearing misfolded RHO and reducing photoreceptor death. We found that retinas from mice heterozygous for the gene encoding the RHO<sup>P23H</sup> variant (hereafter called P23H) exhibited elevated levels of autophagy flux, and that pharmacological stimulation of autophagy accelerated retinal degeneration. In contrast, reducing autophagy flux pharmacologically or by rod-specific deletion of the autophagy-activating gene <i>Atg5</i>, improved photoreceptor structure and function. Furthermore, proteasome levels and activity were reduced in the P23H retina, and increased when <i>Atg5</i> was deleted. Our findings suggest that autophagy contributes to photoreceptor cell death in P23H mice, and that decreasing autophagy shifts the degradation of misfolded RHO protein to the proteasome and is protective. These observations suggest that modulating the flux of misfolded proteins from autophagy to the proteasome may represent an important therapeutic strategy for reducing proteotoxicity in adRP and other diseases caused by protein folding defects.
DOI: 10.6084/m9.figshare.6815780.v1
title: Inhibiting autophagy reduces retinal degeneration caused by protein misfolding

description: Mutations in the genes necessary for the structure and function of vertebrate photoreceptor cells are associated with multiple forms of inherited retinal degeneration. Mutations in the gene encoding RHO (rhodopsin) are a common cause of autosomal dominant retinitis pigmentosa (adRP), with the Pro23His variant of RHO resulting in a misfolded protein that activates endoplasmic reticulum stress and the unfolded protein response. Stimulating macroautophagy/autophagy has been proposed as a strategy for clearing misfolded RHO and reducing photoreceptor death. We found that retinas from mice heterozygous for the gene encoding the RHO<sup>P23H</sup> variant (hereafter called P23H) exhibited elevated levels of autophagy flux, and that pharmacological stimulation of autophagy accelerated retinal degeneration. In contrast, reducing autophagy flux pharmacologically or by rod-specific deletion of the autophagy-activating gene <i>Atg5</i>, improved photoreceptor structure and function. Furthermore, proteasome levels and activity were reduced in the P23H retina, and increased when <i>Atg5</i> was deleted. Our findings suggest that autophagy contributes to photoreceptor cell death in P23H mice, and that decreasing autophagy shifts the degradation of misfolded RHO protein to the proteasome and is protective. These observations suggest that modulating the flux of misfolded proteins from autophagy to the proteasome may represent an important therapeutic strategy for reducing proteotoxicity in adRP and other diseases caused by protein folding defects.
DOI: 10.6084/m9.figshare.6815753
title: Koutsidi_Moukas_Tzanatos_Table_S1.xls

description: Koutsidi_Moukas_Tzanatos_Table_S1: Niche classification scheme for 205 species of Mediterranean fisheries resources, generated from a Regression tree analysis, using four niche descriptors (distribution, ecology, biology, behaviour). The file includes the traits of the nodes of each niche descriptor for each species examined.<br>
DOI: 10.6084/m9.figshare.6815756.v1
title: Koutsidi_Moukas_Tzanatos_Table_S2.xls

description: Koutsidi_Moukas_Tzanatos_Table_S2: The competition between 205 species of Mediterranean fisheries resources examined, specifically for (a) habitat use, (b) spawning habitat use, and (c) food resources of mature stages. Species occurring in the same habitat (Posidonia beds, coralligene formations, lagoons) according to the cited sources are considered as competitors for the specific resource. The excel file has 3 worksheets: (1) habitat_use: This worksheet contains the 205 species examined, sorted by the modalities of the traits (depth, habitat type, seabed type) relevant to habitat use. (2) adult_food: This worksheet contains the 205 species examined, sorted by the modalities of the traits (maximum length, trophic level, feeding type) relevant to the use of food resources by mature fish. (3) spawning_habitat: This worksheet contains the 205 species examined, sorted by the modalities of the traits (spawning period, spawning habitat) relevant to spawning habitat use.<br>
DOI: 10.6084/m9.figshare.6815726
title: KoRV Transcript Fasta

description: KoRV identified transcripts.
DOI: 10.6084/m9.figshare.6815726.v1
title: KoRV Transcript Fasta

description: KoRV identified transcripts.
DOI: 10.6084/m9.figshare.6815753.v1
title: Koutsidi_Moukas_Tzanatos_Table_S1.xls

description: Koutsidi_Moukas_Tzanatos_Table_S1: Niche classification scheme for 205 species of Mediterranean fisheries resources, generated from a Regression tree analysis, using four niche descriptors (distribution, ecology, biology, behaviour). The file includes the traits of the nodes of each niche descriptor for each species examined.<br>
DOI: 10.6084/m9.figshare.6815702
title: Koutsidi_Moukas_Tzanatos_21_traits_by_235_species.xls

description: This file contains traits data for 235 Mediterranean fisheries resource species. There are data on 21 traits; the data are presented in a continuous or a categorical form (in the latter case, for each trait 2-6 trait categories/modalities exist and each species can only belong to one modality per trait). The excel file has 5 worksheets: (1) <b>continuous_traits_235_species</b>: This worksheet contains information on the continuous traits (longevity, age-at-maturity, fecundity, maximum length, trophic level, depth, optimal temperature). For traits of the range type (e.g. depth) minimum and maximum values as well as the mean value are provided. (2) <b>complete_21_traits_205_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). Only the species with complete information (205 species) on all 21 traits are presented. (3) <b>incomplete_21_traits_235_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). All species, even with incomplete information (235 species) on all 21 traits are presented. (4) <b>reference_codes_per_trait</b>: This worksheet is a matrix of the 235 species by 21 traits with one or more numbers representing a reference from which the information to fill in the trait information (shown in the previous worksheets) was taken. (5) <b>reference_list</b>: This worksheet is a list of reference numbers and the corresponding full references.
DOI: 10.6084/m9.figshare.6815702.v2
title: Koutsidi_Moukas_Tzanatos_21_traits_by_235_species.xls

description: This file contains traits data for 235 Mediterranean fisheries resource species. There are data on 21 traits; the data are presented in a continuous or a categorical form (in the latter case, for each trait 2-6 trait categories/modalities exist and each species can only belong to one modality per trait). The excel file has 5 worksheets: (1) <b>continuous_traits_235_species</b>: This worksheet contains information on the continuous traits (longevity, age-at-maturity, fecundity, maximum length, trophic level, depth, optimal temperature). For traits of the range type (e.g. depth) minimum and maximum values as well as the mean value are provided. (2) <b>complete_21_traits_205_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). Only the species with complete information (205 species) on all 21 traits are presented. (3) <b>incomplete_21_traits_235_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). All species, even with incomplete information (235 species) on all 21 traits are presented. (4) <b>reference_codes_per_trait</b>: This worksheet is a matrix of the 235 species by 21 traits with one or more numbers representing a reference from which the information to fill in the trait information (shown in the previous worksheets) was taken. (5) <b>reference_list</b>: This worksheet is a list of reference numbers and the corresponding full references.
DOI: 10.6084/m9.figshare.6815702.v1
title: Koutsidi_Mouka_Tzanatos_21_traits_by_235_species.xls

description: This file contains traits data for 235 Mediterranean fisheries resource species. There are data on 21 traits; the data are presented in a continuous or a categorical form (in the latter case, for each trait 2-6 trait categories/modalities exist and each species can only belong to one modality per trait). The excel file has 5 worksheets: (1) <b>continuous_traits_235_species</b>: This worksheet contains information on the continuous traits (longevity, age-at-maturity, fecundity, maximum length, trophic level, depth, optimal temperature). For traits of the range type (e.g. depth) minimum and maximum values as well as the mean value are provided. (2) <b>complete_21_traits_205_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). Only the species with complete information (205 species) on all 21 traits are presented. (3) <b>incomplete_21_traits_235_species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 75 traits categories (or modalities). All species, even with incomplete information (235 species) on all 21 traits are presented. (2) <b>reference_codes_per_trait</b>: This worksheet is a matrix of the 235 species by 21 traits with one or more numbers representing a reference from which the information to fill in the trait information (shown in the previous worksheets) was taken. (3) <b>reference_list</b>: This worksheet is a list of reference numbers and the corresponding full references.
DOI: 10.6084/m9.figshare.6815705.v1
title: jdft_2d-7-7-2018.json

description: 2D materials
DOI: 10.6084/m9.figshare.6815705.v2
title: jdft_2d.json

description: 2D materials
DOI: 10.6084/m9.figshare.6815705.v3
title: jdft_2d.json

description: 2D materials
DOI: 10.6084/m9.figshare.6815699.v1
title: jdft_3d-7-7-2018.json

description: https://jarvis.nist.gov/<br><br>The Density functional theory section of JARVIS (JARVIS-DFT) consists of thousands of VASP based calculations for 3D-bulk, single layer (2D), nanowire (1D) and molecular (0D) systems. Most of the calculations are carried out with optB88vDW functional. JARVIS-DFT includes materials data such as: energetics, diffraction pattern, radial distribution function, band-structure, density of states, carrier effective mass, temperature and carrier concentration dependent thermoelectric properties, elastic constants and gamma-point phonons.
DOI: 10.6084/m9.figshare.6815699.v2
title: jdft_3d.json

description: https://jarvis.nist.gov/<br><br>The Density functional theory section of JARVIS (JARVIS-DFT) consists of thousands of VASP based calculations for 3D-bulk, single layer (2D), nanowire (1D) and molecular (0D) systems. Most of the calculations are carried out with optB88vDW functional. JARVIS-DFT includes materials data such as: energetics, diffraction pattern, radial distribution function, band-structure, density of states, carrier effective mass, temperature and carrier concentration dependent thermoelectric properties, elastic constants and gamma-point phonons.
DOI: 10.6084/m9.figshare.6815705.v5
title: JARVIS-DFT 2D dataset (jdft_2d.json)

description: https://www.ctcms.nist.gov/~knc6/JVASP.html<br><br>2D materials
DOI: 10.6084/m9.figshare.6815699.v3
title: jdft_3d.json

description: https://jarvis.nist.gov/<br><br>The Density functional theory section of JARVIS (JARVIS-DFT) consists of thousands of VASP based calculations for 3D-bulk, single layer (2D), nanowire (1D) and molecular (0D) systems. Most of the calculations are carried out with optB88vDW functional. JARVIS-DFT includes materials data such as: energetics, diffraction pattern, radial distribution function, band-structure, density of states, carrier effective mass, temperature and carrier concentration dependent thermoelectric properties, elastic constants and gamma-point phonons.