cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25684509.v1
title: Additional file 2 - datasets and scripts for metabolome analysis

description: For the metabolome data, all calculations and statistical analyses were performed using Python. The Shapiro-Wilk test was performed to identify the metabolites whose concentrations in the blood showed a normal distribution, and Student’s t-test was used to compare their concentrations in blood samples for the IUGR and NORM groups. Metabolites whose concentrations did not show a normal distribution were compared between the two groups using the non-parametric Mann–Whitney test. The Benjamini–Hochberg correction was applied in both cases to account for the risk I inflation associated with multiple comparisons. Before being subjected to unsupervised and supervised algorithms, the concentration of each metabolite was normalised and centred. Principal component analysis (PCA) and orthogonal projection to latent structures-discriminant analysis (OPLS-DA) were employed as unsupervised and supervised methods in the multivariate analysis, respectively. PCA was used for the identification of outliers (Mahalanobis distance metric) as well as the spontaneous clustering of similar samples in the scatter plot of the two principal components. In the OPLS-DA analysis, the X matrix consisted of metabolite concentrations, while the Y vector contained information regarding the group (IUGR or NORM). The goodness of fit of the OPLS-DA model (R2Y) was reported, and predictive performance was assessed through cross-validation. Metrics such as the predictive ability of the model (Q2Y) and the predictive ability of permuted models (Q2Y-perm) were calculated for evaluation. OPLS-DA loading plots were used to illustrate the metabolites that contributed the most to the separation between the IUGR and NORM groups. The identification of metabolites of interest was made through the combination of the variable importance in the projection (VIP) and the loading between the metabolite in the X matrix and the predictive latent variable (pLV) of the model. Metabolites with VIP &gt;1.0 and absolute high loading values were considered important in the metabolomics signature (De la Barca et al., 2022).References:Chao de la Barca JM, Chabrun F, Lefebvre T, Roche O, Huetz N, Blanchet O, Legendre G, Simard G, Reynier P, Gascoin G: A Metabolomic Profiling of Intra-Uterine Growth Restriction in Placenta and Cord Blood Points to an Impairment of Lipid and Energetic Metabolism. Biomedicines 2022, 10:1411.
DOI: 10.6084/m9.figshare.25858135.v1
title: Supplementary Material for: Efficacy and Safety of Local Liver Radioablation in HCC Lesions within and beyond Limits of Thermal Ablation

description: Introduction: CT-guided interstitial Brachytherapy (iBT) Radiotherapy has been established in the treatment of liver tumors. With iBT, HCC lesions can be treated beyond the limits of thermal ablation (i.e., size and location). However, a comprehensive analysis of the efficacy of iBT in patients within and beyond thermal ablation limits is lacking.
Materials and Methods: 146 patients with 216 HCC lesions have been analyzed retrospectively. Clinical and imaging follow-up data has been collected. Lesions were evaluated in terms of suitability for thermal ablation or not. The correlation between local tumor control (LTC), time-to-progression (TTP), and overall survival (OS), and clinical and imaging parameters have been evaluated using univariable and multivariable Cox regression analyses.
Results: LTC rates at 12 months, 24 months, and 36 months were 87%,75%, and 73%, respectively. 65% of lesions (n=141) were not suitable for RFA. The median TTP was 13 months, and the median OS was not reached (3-year OS rate: 70%). No significant difference in LTC, TTP, or OS regarding RFA suitability existed. However, in the overall multivariable analysis, lesion diameter &gt; 5 cm was significantly associated with lower LTC (HR: 3.65, CI (1.60-8.31), p=0.002) and shorter TTP (HR: 2.08, CI (1.17-3.70), p=0.013). Advanced BCLC stage, Child-Pugh Stage, and hepatitis B were associated with shorter OS. 
Conclusion: iBT offers excellent LTC rates and OS in local HCC treatment regardless of the limits of thermal ablation, suggesting further evidence of its alternative role to thermal ablation in patients with early-stage HCC.
DOI: 10.17632/27kywgfynh
title: VCF files of LD-pruned genome-wide SNPs and InDels in abaca (Musa textilis Née)

description: The study that produced this dataset aimed to discover and analyze polymorphisms in abaca (Musa textilis) vital for varietal authentication and cross-species genotyping for advanatageous traits such as disease resistance, climate change resilience and enhanced agronomic traits. This dataset contains the resulting genotype calls in abaca (within M. textilis and between M. textilis and other Musa spp.) stored in variant call format (VCF) files. The genotypes are in the form of SNPs or InDels. 

The VCf files starting with 'Mtextilis' and 'Musa' pertain to genotypes mined within M. textilis and between Musa spp., respectively. The VCF files containing SNPs or InDels are denoted by 'SNPsonly' and 'Indelsonly' file labeles, respectively. The 'AP' label indicate that the reference genome used for mapping and variant calling is a polished version of Galvez et al. (2020)'s reference genome. The 'minQ40' label indicates that the VCF files contains only SNPs and InDels with mapping quality of at least 40. The 'geno0.1' and 'pruned' labeles indicate that genotypes having at most 10% missing genotypes and those that are pruned-in (based on linkage disequilibrium thresholds) were selected.
DOI: 10.17632/5wpj8nh2cv
title: SyntheticFaceDataset_Male_Part2

description: Part 2 of the synthetic facial data rendered from male fbx models. The total dataset contains around 24k facial images generated from 14 identity and the corresponding raw facial depth and head pose.
DOI: 10.6084/m9.figshare.1421985.v1
title: Protein expression levels of 77 proteins from Control and Down Syndrome mice

description: Protein expression levels of 77 proteins measured in the nuclear fraction of cortex from control and Down syndrome mice (Ts65Dn). First column indicates mouse id.<br>For each mouse 15 measurements were registered.<br>Last four columns indicate: Genotype (control or trisomy), Treatment (memantine or saline), Behavior (context-shock (C/S) or shock-context (S/C)) and the class of mice according to the three features (c-CS-s, c-CS-m, c-SC-s, c-SC-m, c-SC-s, t-CS-s, t-CS-m, t-SC-s, t-SC-m, t-SC-s ). These data are a subset of those used in Ahmed et al PLoS One. 2015 10(3):e0119491.
DOI: 10.6084/m9.figshare.21502614.v5
title: Global climate-driven transmission suitability maps for dengue virus transmitted by Aedes aegypti mosquitoes from 1979 to 2022

description: 08/16/2023: the Index P maps have been updated to Version 2.0*06/08/2023: the Index P maps are currently being updated and will be re-uploaded shortly.This file contains transmission suitability maps for dengue virus (DENV) transmitted by<i> Aedes aegypti</i> mosquitoes from 1979 to 2022 for 186 countries or territories. These maps were generated using a mosquito-borne viral suitability measure referred to as Index P. Each file contains the monthly, yearly and typical year summary statistics of the time series of DENV transmission potential of <i>Aedes aegypti </i>at the spatial pixel level (~28km2) for a given country. An excel document that describes the file contents for each country is also provided. Full details are available in an article published at Scientific Data: "Nakase, T., Giovanetti, M., Obolski, U. <i>et al.</i> Global transmission suitability maps for dengue virus transmitted by <i>Aedes aegypti</i> from 1981 to 2019. <i>Sci Data</i> <b>10</b>, 275 (2023). https://doi.org/10.1038/s41597-023-02170-7"This dataset can be used to understand past and current climate-driven transmission suitability of DENV for its primary vector <i>Aedes aegypti</i> in an area of interest.*We have added several years to the time series (1979-1980, 2020-2022) and assumed more informative priors for the scaling coefficients to minimize extreme values of Index P noted in the previous version.
DOI: 10.6084/m9.figshare.24781761.v1
title: CompEntre 4.0 Validation results all data raw

description: We conducted an expert survey to validate our competence model for Industry 4.0 startups. This is the raw data from the survey, which was then further calculated and analyzed.
DOI: 10.6084/m9.figshare.26087836.v1
title: HiGTS_2008s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2008s1 contains the data from January 1, 2008 to March 31, 2008.
DOI: 10.6084/m9.figshare.4789339.v1
title: Search_plosone_dataset_27mar2017.csv

description: Dataset is from the South and East China Case-Control Studies (SEarCh) in Prostate and Bladder Cancer. This dataset relates specifically to an investigation of physical activity and its association with prostate and bladder cancer (all other data fields have been removed).
DOI: 10.17632/7xyvbzpxp5
title: Saint Anselm College Trails on OpenStreetMap

description: I used publicly shared data from Strava, as well as from cross country race maps issued to runners, and an antiquated cross country ski trail map located on the trails themselves. I used this data and my existing knowledge of the terrain in order to digitize these trails to OpenStreetMap in the form of points and lines. I created two Changesets on OpenStreetMap, numbered 163216275 and 163165751.
DOI: 10.17632/g2952ng5td
title: Customer Satisfaction Level of Bangladesh Parjatan Corporation’s Restaurants

description: The study aimed to assess Bangladesh Parjatan Corporation's restaurants' customer satisfaction to improve quality and services. It was found that the price of the food items was not extensive comparing to international standards, but expensive in the country context. It takes an extended time in-between ordering and delivery. The manner and etiquette of the waiters and other restaurant service people were not up to the mark. Customers enjoy a healthy environment during food consumption. The food quality is not appropriately controlled, and less quantity of food, notably inferior portion, was served, which was treated as cheating activities. The study found that the outside washroom and interior designs were not satisfactory. Hence, the restaurant needs to take the initiative to bring more mobility for ensuring prompt service where customers will not have to wait long for food. A training program is required to improve human resources' professionalism, including waiters/waitresses and kitchen staff. Special attention is warranted on food portioning so that the customers are not cheated.
DOI: 10.17632/vpb6m7gmhn
title: SUPPLEMENTARY MATERIALS: Deucravacitinib versus placebo and apremilast in moderate to severe plaque psoriasis: efficacy and safety results from the 52-week, randomized, double-blinded, placebo-controlled phase 3 POETYK PSO-1 trial

description: Supplementary materials for the publication of Armstrong A. Deucravacitinib versus placebo and apremilast in moderate to severe plaque psoriasis: efficacy and safety results from the 52-week, randomized, double-blinded, placebo-controlled phase 3 POETYK PSO-1 trial. J Am Acad Dermatol 2022.
DOI: 10.4121/uuid:aa01a720-4616-43e9-af67-370942019f48
title: Business Process Drift

description: A synthetic dataset of 72 event logs based on Loan Assessment process, containing different types of process drift.
DOI: 10.6084/m9.figshare.24483622.v1
title: SOC stock and accumulation rate in China’s coastal wetlands

description: This dataset includes 262 SOC sampling sites and 120 CAR sampling sites in coastal wetlands of 11 coastal provinces in China (latitude from 18°N to 40°N ) during 2000-2020.
DOI: 10.6084/m9.figshare.3564090.v1
title: Appendix A. Summary of the categorical, morphological, and physical attributes by guild.

description: Summary of the categorical, morphological, and physical attributes by guild.
DOI: 10.6084/m9.figshare.5128687.v1
title: Supplementary Material for: A 24-Week, Randomized, Controlled Study to Evaluate the Tolerability, Safety and Efficacy of 2 Different Titration Schemes of the Rivastigmine Patch in Japanese Patients with Mild to Moderate Alzheimer's Disease

description: <b><i>Aim:</i></b> To investigate whether 1-step titration of the rivastigmine patch (initiated at 5 cm<sup>2</sup> and titrated to 10 cm<sup>2</sup> after 4 weeks) is well tolerated in Japanese patients with Alzheimer's disease (AD) as compared to 3-step titration (initiated at 2.5 cm<sup>2</sup> and titrated by 2.5 cm<sup>2</sup> every 4 weeks to 10 cm<sup>2</sup>). <b><i>Methods:</i></b> A 24-week, multicenter, randomized, double-blind study was conducted in Japan between July 2012 and May 2014. Patients with mild to moderate AD aged 50-85 years were randomized 1:1 to 1-step or 3-step titration of the rivastigmine once-daily patch. The primary endpoint was the proportion of patients with adverse events leading to discontinuation. <b><i>Results:</i></b> Of 216 patients randomized, 215 (1-step, n = 107; 3-step, n = 108) were included in the safety analysis. The primary endpoint outcome was 15.0% in the 1-step group and 18.5% in the 3-step group. The observed treatment difference was −3.6% (95% confidence interval: −17.0, 9.6), falling within the prespecified acceptance range. <b><i>Conclusion:</i></b> The tolerability of two different titration schemes was similar in Japanese patients with AD.
DOI: 10.6084/m9.figshare.14211224.v1
title: mBio_Wang_etal_2020_supplement_TableS3

description: <b>Supplemental Table S3. Differentially expressed genes among <i>C. albicans </i>isolates. </b>Differentially expressed genes were defined by a q-value &lt; 0.05 and ≥ 2-fold change. LogFC is log<sub>2</sub> fold change, logCPM is log2 counts per million differences, PValue is the p-value for the gene, and FDR indicates the false discovery rate corrected p-value. Positive LogFC value indicate higher expression in the second strain in the tab title and negative value indicate lower expression.
DOI: 10.6084/m9.figshare.19076753.v3
title: NanoSIMS depth profiles of biomineralized cells of Acidovorax sp. ST3 grown under denitrifying and As(III) & Fe(II)-oxidizing conditions, using both the O- & Cs+ beams

description: Data for Figures 3 and S6 in paper: "Elucidating Heterogeneous Iron Biomineralization Patterns in a Denitrifying As(III)-Oxidizing Bacterium: Implications for Arsenic Immobilization"<br>Single Acidovorax sp. ST3 cells (7 days incubation) were selected for depth profiling. Both Cs<sup>+</sup> and O<sup>-</sup> were used as primary ions and the selected areas were not implanted prior to starting the analysis (to preserve and keep the biomineral coating on the cells intact). Image raster sizes were 3-7 µm width. Spatial resolution was achieved by using D1=4 or 5 (beam size=120-100 nm). Pixel sizes were 128 x 128 or 256 x 256, and dwell time varied from 5,000-20,000 µs px<sup>-1</sup>. 50-170 planes were collected, and the scanning was stopped when the <sup>12</sup>C<sup>14</sup>N or <sup>56</sup>Fe<sup>+ </sup>signal disappeared. The data was processed using the L’image software (Larry Nittler, Carnegie Institution of Washington) and the plugin OpenMIMS for ImageJ (www.nrims.harvard.edu). 3D reconstructions of the depth profiles were generated using the Thermo Scientific™ Avizo™ Software 9.7.0. Stack data of the negative secondary ions<sup> 12</sup>C<sup>-</sup>, <sup>56</sup>Fe<sup>16</sup>O<sup>-</sup> and <sup>75</sup>As<sup>- </sup>, and the positive secondary ions <sup>23</sup>Na<sup>+</sup>, <sup>56</sup>Fe<sup>+</sup>, and <sup>75</sup>As<sup>+</sup>, were first extracted in ImageJ and saved as “.raw” format files, which were loaded into Avizo™. The Z depth was compressed to 15-20 %. The <sup>12</sup>C<sup>-</sup> and <sup>23</sup>Na<sup>+ </sup>signals were smoothed over 2-3 pixels. The commands “generate surface” and “show surface” were used sequentially, and the “transparent” display with a transparency of 80 % was selected. <sup>56</sup>Fe<sup>+</sup> and <sup>56</sup>Fe<sup>16</sup>O<sup>-</sup> signals were smoothed to 2 pixels and displayed as “shaded”. The <sup>75</sup>As<sup>+/- </sup>ion counts were smoothed to 1 pixel.<br>Four depth profile files are presented, including the .im raw nanoSIMS files, extracted <sup>75</sup>As<sup>+/-</sup>, <sup>56</sup>Fe<sup>16</sup>O<sup>-</sup>/<sup>56</sup>Fe<sup>+</sup>, <sup>12</sup>C/<sup>23</sup>Na counts as .raw format (ready to load into AVIZO), and complementary image and videos of the 3D reconstructions for each depth profile (jpg and mpg formats).
DOI: 10.6084/m9.figshare.25573842.v1
title: Supplementary Material for: Pseudomonas stutzeri KC carries the pdt genes for carbon tetrachloride degradation on an integrative and conjugative element

description: Pseudomonas stutzeri KC can rapidly degrade carbon tetrachloride (CCl4) to CO2 by a fortuitous reaction with pyridine-2,6-bis(thiocarboxylic acid), a metal chelator encoded by pdt genes. These genes were first identified after a spontaneous mutant, strain CTN1, lost the ability to degrade CCl4. Here we report the complete genome of strain KC and show that these pdt genes are located on an integrative and conjugative element (ICE), designated ICEPsstKC. Comparative genome analyses revealed homologues of pdt genes in genomes of members of other gammaproteobacterial orders. Discrepancies between the tree topologies of the deduced pdt gene products and the host phylogeny based on 16S rRNA provided evidence for horizontal gene transfer (HGT) in several sequenced strains of these orders. In addition to ICEPsstKC, HGT may be have been facilitated by other mobile genetic elements, as indicated by the location of the pdt gene cluster adjacent to fragments of other ICEs and prophages in several genome assemblies. We could here show that the majority of cells from the culture collection DSMZ had lost the ICE. The presence of the pdt gene cluster on mobile genetic elements has important implications for the bioremediation of CCl4 for bioremediation of CCl4 and needs consideration when selecting suitable strains.
DOI: 10.6084/m9.figshare.29123918.v1
title: IEEE_Tr_CNS.pdf

description: Recent renewed interest in radio frequency identification (RFID) suggests that low-cost passive RFID tags will play a vital role in the Internet of Things (IoT), bridging the gap between the physical and virtual realms. In RFID systems based on dynamic frame-slotted ALOHA (DFSA), it is essential to precisely estimate the number of tags for proper operation of the systems. The challenge with tag quantity estimation is the limited amount of information available for estimation. In particular, a tag estimation is typically performed on a per-frame basis using a single set of statistics collected during a frame. Moreover, the tag population in a reader’s interrogation zone is steadily increasing with the advent of the IoT era. Nevertheless, most estimators perform well even for highly dense tag populations. In this study, we investigate how the tag population affects the performance of tag estimators. In particular, by establishing several strong laws of large numbers (SLLN) results, we show that the estimates always converge to the actual values as the number of tags becomes large. Based on the SLLN results, we propose a novel estimation method where estimates are given as fixed points of contraction mappings. Finally, we examine the key properties of the proposed estimator.
DOI: 10.17632/7spd6fpvyk
title: Dataset: Electronic Nose for Quality Control of Colombian Coffee through the Detection of Defects in “Cup Tests”

description: This dataset is related to the research paper "Electronic Nose for Quality Control of Colombian Coffee through the Detection of Defects in "Cup Tests" published in Sensors (Basel) journal (available online since December 24, 2009, https://www.mdpi.com/1424-8220/10/1/36). Please cite the mentioned article if you found useful information or use the dataset. This dataset comprises time-series recorded by an electronic nose system (E-Nose) for an application of coffee quality control focused on the detection of defects. The database contains 58 measurements of coffee divided into three groups and labeled as high quality (HQ), average quality (AQ), and low quality (LQ). The time series acquired at 1 Hz of sampling frequency during 300 seconds correspond to 300 data points per sensor. Each file in the dataset has eight columns with the resistance readings in kΩ of the eight gas sensors: SP-12A, SP-31, TGS-813, TGS-842, SP-AQ3, TGS-823, ST-31, TGS-800. We organized the database into three folders: AQ_Coffee, HQ_Coffee, LQ_Coffee. Each folder contains text files that correspond to different measurements. The filename identifies the measurement as follows: the first two characters of the filename are an identifier of the quality coffee threshold (AQ: average-quality, HQ: high-quality, LQ: low-quality); and the last two characters indicate the measurement number. For example, file LQ_01 contains the time series recorded when the sample 01 of low-quality coffee was measured.
DOI: 10.6084/m9.figshare.17099317.v1
title: COLOSS Task Force to Investigate and Reduce <i>Vespa velutina</i> Impacts and Spread

description: COLOSS Task Force to Investigate and Reduce <i>Vespa velutina</i> Impacts and Spread
DOI: 10.6084/m9.figshare.14936052.v12
title: Maps of cropping patterns in China during 2015-2021

description: Here we present the first annual 500-m maps of multiple cropping systems in china at national scale during 2015 to 2020,which provide information on cropping intensity with descriptions of three staple crops (Maize,paddy rice and wheat). We produced the cropping patterns maps by developing phenological metrics, which can be applied to national scale. Qiu, B. et al. Maps of cropping patterns in China during 2015-2021. Scientific data (accepted). DOI: 10.1038/s41597-022-01589-8<br>
DOI: 10.6084/m9.figshare.22041212.v2
title: MDDSymptoms

description: All summary statistics have the following columns: CHR: chromosome SNP: rsID of SNP POS: base-pair coordinate A1: effect allele A2: other allele MAF: minor allele frequency OR: odds ratio of effect allele SE: standard error of log(OR) P: P value of association N: sample size (which may differ between different SNPs due to missing genotypes at SNPs) <br> GWAS summary statistics are available for the following phenotypes: 1. PHQ9A1-A9: MDD symptoms in UK Biobank, based on PHQ9. 2. WorstEpisodeA1-A9 (no A5): WorstEpisode symptoms in UK Biobank, based on CIDI-SF. 3. dsPHQ9A3, A4, A6, A7, A8: PHQ9 symptoms down sampled to the same effective sample size as corresponding WorstEpisode. 4. dsWorstEpisodeA1, A2, A9: WorstEpisode symptoms down sampled to the same effective sample size as corresponding PHQ9 symptoms. 5. PHQ9SkipA3-A9: PHQ9 symptoms with a skip structure. LifetimeMDD: lifetime MDD phenotype in 67K individuals in UK Biobank, as described in Cai et al 2020 Nature Genetics.