cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5886424.v1
title: Dataset for: Bayesian modelling of lung function data from multiple-breath washout tests

description: Paediatric respiratory researchers have widely adopted the multiple-breath washout (MBW) test because it allows assessment of lung function in unsedated infants and is well suited to longitudinal studies of lung development and disease. However, a substantial proportion of MBW tests in infants fail current acceptability criteria. We hypothesised that a model-based approach to analysing the data, in place of traditional simple empirical summaries, would enable more efficient use of these tests. We therefore developed a novel statistical model for infant MBW data and applied it to 1,197 tests from 432 individuals from a large birth cohort study. We focus on Bayesian estimation of the lung clearance index (LCI), the most commonly used summary of lung function from MBW tests. Our results show that the model provides an excellent fit to the data and shed further light on statistical properties of the standard empirical approach. Furthermore, the modelling approach enables LCI to be estimated using tests with different degrees of completeness, something not possible with the standard approach. Our model therefore allows previously unused data to be used rather than discarded, as well as routine use of shorter tests without significant loss of precision. Beyond our specific application, our work illustrates a number of important aspects of Bayesian modelling in practice, such as the importance of hierarchical specifications to account for repeated measurements and the value of model checking via posterior predictive distributions.
DOI: 10.6084/m9.figshare.5886418
title: A temperature-controlled stage for laser scanning confocal microscopy and case studies in materials science

description: Figures of the paper "A temperature-controlled stage for laser scanning confocal microscopy and case studies in materials science" The preprint is here: https://arxiv.org/abs/1712.08510<br>
DOI: 10.6084/m9.figshare.5886418.v1
title: A temperature-controlled stage for laser scanning confocal microscopy and case studies in materials science

description: Figures of the paper "A temperature-controlled stage for laser scanning confocal microscopy and case studies in materials science" The preprint is here: https://arxiv.org/abs/1712.08510<br>
DOI: 10.6084/m9.figshare.5886367
title: Triticum urartu accession TMU06 leaf transcriptome

description: De novo transcriptome assembly of Triticum urartu accession TMU06 based on leaf RNAseq data (SRA SRR1915965; SRR1916396). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886367.v1
title: Triticum urartu accession TMU06 leaf transcriptome

description: De novo transcriptome assembly of Triticum urartu accession TMU06 based on leaf RNAseq data (SRA SRR1915965; SRR1916396). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886364
title: Poa supina leaf transcriptome

description: De novo transcriptome assembly of Poa supina based on leaf RNAseq data (SRA SRR1634026). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886364.v1
title: Poa supina leaf transcriptome

description: De novo transcriptome assembly of Poa supina based on leaf RNAseq data (SRA SRR1634026). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886361
title: Poa infirma leaf transcriptome

description: De novo transcriptome assembly of Poa infirma based on leaf RNAseq data (SRA SRR1634028). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886361.v1
title: Poa infirma leaf transcriptome

description: De novo transcriptome assembly of Poa infirma based on leaf RNAseq data (SRA SRR1634028). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886358
title: Avena sativa accession Starter leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Starter based on leaf RNAseq data (SRA SRR3989685; SRR3989644; SRR3989645; SRR3989646). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886358.v1
title: Avena sativa accession Starter leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Starter based on leaf RNAseq data (SRA SRR3989685; SRR3989644; SRR3989645; SRR3989646). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886355
title: Avena sativa accession Mongolia leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Mongolia based on leaf RNAseq data (SRA SRR5818212; SRR5818213; SRR5818214; SRR5818215; SRR5818216; SRR5818217). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886355.v1
title: Avena sativa accession Mongolia leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Mongolia based on leaf RNAseq data (SRA SRR5818212; SRR5818213; SRR5818214; SRR5818215; SRR5818216; SRR5818217). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886349
title: Avena sativa accession Huazao2 leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Huazao2 based on leaf RNAseq data (SRA SRR5097465; SRR5097467; SRR5097471; SRR5097472; SRR5097473; SRR5097474). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886349.v1
title: Avena sativa accession Huazao2 leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Huazao2 based on leaf RNAseq data (SRA SRR5097465; SRR5097467; SRR5097471; SRR5097472; SRR5097473; SRR5097474). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886343
title: Avena sativa accession Hanyou5 leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Hanyou5 based on leaf RNAseq data (SRA SRR5097463; SRR5097464; SRR5097466; SRR5097468; SRR5097469; SRR5097470). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886343.v2
title: Avena sativa accession Hanyou5 leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Hanyou5 based on leaf RNAseq data (SRA SRR5097463; SRR5097464; SRR5097466; SRR5097468; SRR5097469; SRR5097470). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886343.v1
title: Avena sativa Hanyou5 leaf transcriptome

description: De novo transcriptome assembly of Avena sativa accession Hanyou5 based on leaf RNAseq data (SRA SRR5097463; SRR5097464; SRR5097466; SRR5097468; SRR5097469; SRR5097470). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886340
title: Aegilops tauschii accession TQ27 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession TQ27 based on leaf RNAseq data (SRA SRR5096888; SRR5096893). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886340.v1
title: Aegilops tauschii accession TQ27 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession TQ27 based on leaf RNAseq data (SRA SRR5096888; SRR5096893). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886337
title: Aegilops tauschii accession ERS399496 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession ERS399496 based on leaf RNAseq data (SRA ERR420230; ERR420231). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886337.v1
title: Aegilops tauschii accession ERS399496 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession ERS399496 based on leaf RNAseq data (SRA ERR420230; ERR420231). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886334
title: Aegilops tauschii accession D-2220009 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession D-2220009 based on leaf RNAseq data (SRA SRR949823). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886334.v1
title: Aegilops tauschii accession D-2220009 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession D-2220009 based on leaf RNAseq data (SRA SRR949823). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886331
title: Aegilops tauschii accession ATL leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession ATL based on leaf RNAseq data (SRA SRR4253230; SRR4253232). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886331.v1
title: Aegilops tauschii accession ATL leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession ATL based on leaf RNAseq data (SRA SRR4253230; SRR4253232). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886328
title: Aegilops tauschii accession AL8/78 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession AL8/78 based on leaf RNAseq data (SRA ERR2190533; ERR2190534; ERR2190535). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886328.v1
title: Aegilops tauschii accession AL8/78 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession AL8/78 based on leaf RNAseq data (SRA ERR2190533; ERR2190534; ERR2190535). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886325
title: Aegilops tauschii accession 2220007 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession 2220007 based on leaf RNAseq data (SRA SRR947843; SRR947844; SRR947845; SRR947846). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886325.v1
title: Aegilops tauschii accession 2220007 leaf transcriptome

description: De novo transcriptome assembly of Aegilops tauschii accession 2220007 based on leaf RNAseq data (SRA SRR947843; SRR947844; SRR947845; SRR947846). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886322
title: Aegilops speltoides accession ERS399496 leaf transcriptome

description: De novo transcriptome assembly of Aegilops speltoides accession ERS399496 based on leaf RNAseq data (SRA ERS399496; ERR420227). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886322.v1
title: Aegilops speltoides accession ERS399496 leaf transcriptome

description: De novo transcriptome assembly of Aegilops speltoides accession ERS399496 based on leaf RNAseq data (SRA ERS399496; ERR420227). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886316
title: Aegilops speltoides accession B-2140016 leaf transcriptome

description: De novo transcriptome assembly of Aegilops speltoides accession B-2140016 based on leaf RNAseq data (SRA SRR949822). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886316.v1
title: Aegilops speltoides accession B-2140016 leaf transcriptome

description: De novo transcriptome assembly of Aegilops speltoides accession B-2140016 based on leaf RNAseq data (SRA SRR949822). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886313
title: Aegilops sharonesis accession 542237 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 542237 based on leaf RNAseq data (SRA ERR426417). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886313.v1
title: Aegilops sharonesis accession 542237 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 542237 based on leaf RNAseq data (SRA ERR426417). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886310
title: Aegilops sharonesis accession 6856 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 6856 based on leaf RNAseq data (SRA ERR426411). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886310.v1
title: Aegilops sharonesis accession 6856 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 6856 based on leaf RNAseq data (SRA ERR426411). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886304
title: Aegilops sharonesis accession 6793 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 6793 based on leaf RNAseq data (SRA ERR426409). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886304.v1
title: Aegilops sharonesis accession 6793 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 6793 based on leaf RNAseq data (SRA ERR426409). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886298
title: Aegilops sharonesis accession 2233 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2233 based on leaf RNAseq data (SRA ERR426408). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886298.v1
title: Aegilops sharonesis accession 2233 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2233 based on leaf RNAseq data (SRA ERR426408). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886295
title: Aegilops sharonesis accession 2205 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2205 based on leaf RNAseq data (SRA ERR426407). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886295.v1
title: Aegilops sharonesis accession 2205 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2205 based on leaf RNAseq data (SRA ERR426407). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886292
title: Aegilops sharonesis accession 2189 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2189 based on leaf RNAseq data (SRA ERR426404). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886292.v1
title: Aegilops sharonesis accession 2189 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2189 based on leaf RNAseq data (SRA ERR426404). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886286
title: Aegilops sharonesis accession 2172 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2172 based on leaf RNAseq data (SRA ERR426414). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886286.v1
title: Aegilops sharonesis accession 2172 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2172 based on leaf RNAseq data (SRA ERR426414). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886280
title: Aegilops sharonesis accession 2020 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2020 based on leaf RNAseq data (SRA ERR426412). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886280.v1
title: Aegilops sharonesis accession 2020 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 2020 based on leaf RNAseq data (SRA ERR426412). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886277
title: Aegilops sharonesis accession 1998 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1998 based on leaf RNAseq data (SRA ERR426415). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886277.v1
title: Aegilops sharonesis accession 1998 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1998 based on leaf RNAseq data (SRA ERR426415). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886274
title: Aegilops sharonesis accession 1995 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1995 based on leaf RNAseq data (SRA ERR426406). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886274.v1
title: Aegilops sharonesis accession 1995 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1995 based on leaf RNAseq data (SRA ERR426406). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5886271
title: Aegilops sharonesis accession 1192 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1192 based on leaf RNAseq data (SRA ERR426418). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886271.v1
title: Aegilops sharonesis accession 1192 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 1192 based on leaf RNAseq data (SRA ERR426418). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886268
title: Aegilops sharonesis accession 575 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 575 based on leaf RNAseq data (SRA ERR426403). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886268.v1
title: Aegilops sharonesis accession 575 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 575 based on leaf RNAseq data (SRA ERR426403). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886265
title: Aegilops sharonesis accession 548 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 548 based on leaf RNAseq data (SRA ERR426405). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886265.v1
title: Aegilops sharonesis accession 548 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 548 based on leaf RNAseq data (SRA ERR426405). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5886262
title: Aegilops sharonesis accession 546 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 546 based on leaf RNAseq data (SRA ERR426410). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.
DOI: 10.6084/m9.figshare.5886259
title: Aegilops sharonesis accession 409 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 409 based on leaf RNAseq data (SRA ERR426413). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.
DOI: 10.6084/m9.figshare.5886253
title: Aegilops sharonesis accession 396 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 396 based on leaf RNAseq data (SRA ERR426416). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.
DOI: 10.6084/m9.figshare.5886253.v1
title: Aegilops sharonesis accession 396 leaf transcriptome

description: De novo transcriptome assembly of Aegilops sharonensis accession 396 based on leaf RNAseq data (SRA ERR426416). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.