cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z6285myxkm.2
title: Core-top carbon isotope measurements of dinoflagellate cysts

description: The here deposited data represents stable carbon isotope measurements of dinoflagellate cyst (dinocyst) taxa isolated from core-top sediments. Carbon isotope data were generated using laser-ablation / nano-combustion / gas chromatography isotope ratio mass spectrometry (LA-nC-GC/IRMS) and each measurement represents 3-7 individual, hand-picked, dinocysts. A more detailed description of sample and data processing can be found here: https://bg.copernicus.org/preprints/bg-2022-118/ (updated with final version once available). 

The data were used to test dependency of carbon isotope fractionation to environmental parameters, most notably CO2, in order to construct a pCO2 proxy based on dinocyst carbon isotope fractionation. Carbon isotope data for five species (Operculodinium centrocarpum, Spiniferites ramosus, Spiniferites elongatus, Spiniferites mirabilis and Impagidinium aculeatum are presented, from 19 localities in the Atlantic Ocean and Mediterranean sea (listed in the data files), as well as pre-industrial material from the North Atlantic Ocean (ENAM9606, 55.650 ºN, -13.985 ºE). 

Three data files (summary and raw measurements for the core-tops and pre-industrial samples) are added. The summary file contains the data to calculate carbon isotope fractionation (ep) for each core-top sample and species (average raw and corrected dinocyst d13C, d13C of dissolved inorganic carbon (DIC), temperature) and the environmental parameters (pCO2, NO3, PO4, Si, temperature, salinity, alkalinity) used to compare to the dinocyst carbon isotope data. The raw measurement data file for the contains the sample identifier which links to the summary file, the species and signal-size and d13C value for each of the 949 individual measurements and similar file is included for the pre-industrial samples from ENAM9606 (n = 137). A signal-size dependent correction is applied based to eliminate small drift induced by background C (d13C adjusted). After this step, a disqualifier is given if the data is excluded based on too low signal intensity (below cut-off / BCO) or represents a statistical outlier within the d13C population of that specific sample and species (OUT). The adjusted d13C data without disqualifiers is included in the 'corrected d13C' and used in the summary file and statistical tests (see also https://bg.copernicus.org/preprints/bg-2022-118/). Species abbrevations: Operculodinium centrocarpum "Ocen", Spiniferites ramosus "Sram", S. elongatus, "Selon", S. mirabilis "Smira", Impagidinium aculeatum "Iacul".
DOI: 10.17632/ytfjzbgby9.2
title: Mediciones hidrodinámicas y fisicoquímicas de la sección interna del Golfo de Nicoya, Costa Rica

description: Mediciones de variables hidrodinámicas y fisicoquímicas realizadas en Marzo y Julio-Agosto de 2022 en la sección interna del Golfo de Nicoya, Costa Rica, por la Unidad de Ingeniería Marítima, de Ríos y de Estuarios (IMARES-UCR) y el Centro de Investigaciones en Ciencias del Mar y Limnología (CIMAR), ambos de la Universidad de Costa Rica. 

Los datos fueron medidos en dos campañas de campo de aproximadamente 2 semanas cada una. La primera campaña se realizó en Marzo de 2022. La segunda campaña se realizó entre finales de Julio y mediados de Agosto 2022. 

La variables medidas son: 
* Batimetría.
* Velocidad y dirección de corrientes en tres puntos fijos de medición.
* Marea en 6 puntos fijos alrededor del sitio de estudio.
* Porcentaje de carbonatos, materia orgánica y arenas en el sedimento de aproximadamente 30 puntos repartidos en toda la sección interna del Golfo de Nicoya.
* Concentración de amonio, clorofila, materia en suspensión, nitratos, nitritos, fosfatos y silicatos en muestras superficiales del agua en aproximadamente 30 puntos de la zona de estudio. 
* Perfiles verticales de concentración de clorofila, turbidez, conductividad, oxígeno disuelto, pH y temperatura del agua en aproximadamente 30 puntos de la zona de estudio. 

Las mediciones se realizaron a través del Fondo Especial de Estímulo a la Investigación 2022, de la Vicerrectoría de Investigación de la Universidad de Costa Rica. 

Los archivos distribuidos consisten en archivos en formato .csv, con un cabecero que resumen algunas de sus características y los datos tabulados con fechas, coordenadas y mediciones. 


***********ENGLISH***********

Hydrodynamics and physico-chemical measurements made in March and July/August 2022 in the inner region of the Gulf of Nicoya, Costa Rica, by the Coastal, Rivers and Estuaries Engineering Unit (IMARES-UCR) and the Sea Science and Limnology Research Center (CIMAR), both from the University of Costa Rica. 

The data was measured during two field campaigns of approximately 2 weeks each. The first one during March 2022. The second one during late July through mid-August 2022. 

The measured data is:
* Bathymetry.
* Water current velocity and direction in 3 fixed study sites. 
* Tide in 6 sites around the study site.
* Carbonate, organic matter and sand percentage in the sediment of approximately 30 sampling points along the study site. 
* Ammonia, chlorophyll, suspended matter, nitrates, nitrites, phosphates, and silicates concentration in surface water samples at approximately 30 sampling points. 
* Vertical profiles of chlorophyll concentration, turbidity, conductivity, dissolved oxygen, pH, and water temperature in approximately 30 sampling points. 

Measurements were made through the Special Research Stimulus Fund 2022 of the Research Vice-rectory of the University of Costa Rica. 

The distributed files are .csv files with a small header with some general characteristics, and the tabulated data with dates, coordenates and measurements.
DOI: 10.17632/f2b536cxz2.1
title: LINF_310008900

description: CRAL/TRIO domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.6qhsr9
title: Occurrence Download

description: A dataset containing 1046515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carassius auratus (Linnaeus, 1758), Carassius carassius (Linnaeus, 1758), Ctenopharyngodon idella (Valenciennes, 1844), Cyprinus carpio Linnaeus, 1758, Esox lucius Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1046515 records from 1128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004422-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/dctm2htrf5.1
title: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

description: Mapping the connectivity of diverse neuronal types provides the foundation for understanding the structure and function of neural circuits. High-throughput and low-cost neuroanatomical techniques based on RNA barcode sequencing have the potential to achieve circuit mapping at cellular resolution and a brain-wide scale, but existing Sindbis virus-based anterograde tracing approaches have limited resolution at which connectivity can be mapped. Rabies virus can complement anterograde tracing approaches by enabling either retrograde labeling of projection neurons or monosynaptic tracing of direct inputs to genetically targeted postsynaptic neurons. However, barcoded rabies virus has so far been only used to map non-neuronal cellular interactions in vivo and synaptic connectivity of cultured neurons. Here we combine barcoded rabies virus with single-cell and in situ sequencing to map connectivity in the mouse brain. We sequenced 391 cells expressing rabies barcodes across seven brains using single-cell RNA-seq, and 3,899,611 cells, including 7,338 neurons expressing rabies barcodes, across three mouse brains using in situ sequencing. We determined the transcriptomic identities of rabies virus-infected cells robustly using both single-cell RNA-seq and in situ sequencing. We then distinguished long-range projecting cortical cell types from multiple cortical areas and identified cell types with converging or diverging synaptic connectivity. Combining in situ sequencing with barcoded rabies virus thus complements existing sequencing-based neuroanatomical techniques and provides a potential path for mapping synaptic connectivity of neuronal types at scale.
DOI: 10.17632/dctm2htrf5.2
title: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

description: Mapping the connectivity of diverse neuronal types provides the foundation for understanding the structure and function of neural circuits. High-throughput and low-cost neuroanatomical techniques based on RNA barcode sequencing have the potential to achieve circuit mapping at cellular resolution and a brain-wide scale, but existing Sindbis virus-based anterograde tracing approaches have limited resolution at which connectivity can be mapped. Rabies virus can complement anterograde tracing approaches by enabling either retrograde labeling of projection neurons or monosynaptic tracing of direct inputs to genetically targeted postsynaptic neurons. However, barcoded rabies virus has so far been only used to map non-neuronal cellular interactions in vivo and synaptic connectivity of cultured neurons. Here we combine barcoded rabies virus with single-cell and in situ sequencing to map connectivity in the mouse brain. We sequenced 391 cells expressing rabies barcodes across seven brains using single-cell RNA-seq, and 3,899,611 cells, including 7,338 neurons expressing rabies barcodes, across three mouse brains using in situ sequencing. We determined the transcriptomic identities of rabies virus-infected cells robustly using both single-cell RNA-seq and in situ sequencing. We then distinguished long-range projecting cortical cell types from multiple cortical areas and identified cell types with converging or diverging synaptic connectivity. Combining in situ sequencing with barcoded rabies virus thus complements existing sequencing-based neuroanatomical techniques and provides a potential path for mapping synaptic connectivity of neuronal types at scale.
DOI: 10.17632/xbfcdnkndn.1
title: LINF_310016700

description: SET domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/3wmm84sfgb.1
title: LINF_310015700

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/34jwfyvkmm.1
title: Milan Test of Rhythmic Ability (MITRA) - Audiomotor integration of rhythmic hand tapping

description: This material includes ERP data collected in musicians and controls during processing of biological motion (namely rhythmic hand tapping), example of experimental stimuli used and the original version of Milan Test of Rhythmic Ability (MITRA). The test can be administered auditorily, and requires the vocal reproduction from the patient. This method avoids impediments due to poor motor skills or finger dexterity/agility, which would interfere with the resolution of the rhythmic reproduction task.
Test vocal stimuli can be requested for research purposes only, upon appropriate acknowledge and quotation of the present source. 
The first part of the test can be administered to non-musicians; The second portion of the test is rather challenging. 
The normative data indicated a significantly higher mean score in professional musicians (14/20, SD= 2.12) than in musically naive controls (6.5/20, SD= 0.71)
DOI: 10.17632/mj36zp2tv8.1
title: LINF_310009400

description: Calpain-like cysteine peptidase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rmng959hgy.1
title: LINF_310028500

description: CRAL/TRIO domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sn2kv34r4h.1
title: Mechanically Induced Thermal Runaway for Li-ion Batteries

description: The deployment of Li-ion batteries covers a wide range of energy storage applications, from mobile phones, e-bikes, electric vehicles (EV) and stationary energy storage systems. However, safety issue such as thermal runaway is always one of the most important concerns to prevent Li-ion batteries from further market penetration. A standardized single-side indentation test protocol was developed to mechanically induce an internal short-circuit. The cell voltage, compressive load, indenter stroke, and temperature at the indentation point are measured in time series. The test data of each cell, along with cell parameters such as dimensions, mass, chemistry, state of charge (SOC), capacity, are integrated together to calculate a thermal runaway severity score from 0 to100. Complete data collection process including the original measured record, test method, severity score calculation scheme is presented in this article. The thermal runaway severity analysis and the more than 100 tested Li-ion battery records provide a good data source for further comparison and ranking of thermal runaway risks.
DOI: 10.17632/24jp9dk4gj.1
title: The ULK1 effector BAG2 regulates autophagy initiation by modulating AMBRA1 localization

description: The file contains raw western blot data of main and supplemental figures of the manuscript "The ULK1 effector BAG2 regulates autophagy initiation by modulating AMBRA1 localization". MW markers and uncropped membranes are shown. All biological replicates are presented and the ones used in the main manuscript are highlighted.
DOI: 10.17632/sn2kv34r4h.2
title: Mechanically Induced Thermal Runaway for Li-ion Batteries

description: The deployment of Li-ion batteries covers a wide range of energy storage applications, from mobile phones, e-bikes, electric vehicles (EV) and stationary energy storage systems. However, safety issue such as thermal runaway is always one of the most important concerns to prevent Li-ion batteries from further market penetration. A standardized single-side indentation test protocol was developed to mechanically induce an internal short-circuit. The cell voltage, compressive load, indenter stroke, and temperature at the indentation point are measured in time series. The test data of each cell, along with cell parameters such as dimensions, mass, chemistry, state of charge (SOC), capacity, are integrated together to calculate a thermal runaway severity score from 0 to100. Complete data collection process including the original measured record, test method, severity score calculation scheme is presented in this article. The thermal runaway severity analysis and the more than 100 tested Li-ion battery records provide a good data source for further comparison and ranking of thermal runaway risks.
DOI: 10.17632/mmrx9c5xtz.1
title: SHRIMP U-Pb isotope data for rutile from lamproite sample DM2/2of Darlimunda lamproites, Bulk-rock geochemical data, Sr-Nd-Hf-Os isotope data of Nuapada lamproite field, Bastar Craton

description: SHRIMP U-Pb isotope data for rutile from lamproite sample DM2/2of Darlimunda lamproites, Bulk-rock geochemical data, Sr-Nd-Hf-Os isotope data of Nuapada lamproite field, Bastar Craton
DOI: 10.17632/6scttfx7mr.1
title: Elements for the replication of the article: Productivity Slowdown and Tax Havens: where is measured value creation?

description: This folder contains the elements for the replication of the article: Productivity Slowdown and Tax Havens: where is measured
value creation? accepted for publication in the Journal of International Economics.
DOI: 10.17632/mhv6c6f2hh.1
title: Cu isotope Witwatersrand

description: Datasets Provide Cu isotope, elemental concentration and images of ores used for study
DOI: 10.17632/28g32y4x5j.1
title: Combined analytical and numerical modeling of the electrical conductivity of 3D printed carbon nanotube-cementitious nanocomposites

description: The data are part of the paper "Combined analytical and numerical modeling of the electrical conductivity of 3D printed carbon nanotube-cementitious nanocomposites"
DOI: 10.17632/ccy9gn2m7k.1
title: LINF_310025250

description: Amino acid transporter | AAT8.2; Leishmania infantum (strain JPCM5)
DOI: 10.17632/z33d3c5d8n.1
title: Global coastal springs dataset

description: This dataset represents the first extensive global inventory of coastal springs, including both nearshore springs, discharging close to the shoreline, and offshore springs, also known as submarine springs, discharging directly onto the ocean floor. The data was gathered through a systematic bibliographic search following PRISMA guidelines. The final list of studies used to compile the data is presented in the Excel file "References". The spring’s locations were identified directly from documents, and in cases where maps were provided, they were extracted, georeferenced in QGIS, and their coordinates recorded. Additional data on coastal springs, including altitude, lithology, discharge patterns, discharge rates, and salinity, were collected when available. In total, 1,123 springs were identified, comprising 645 offshore springs and 478 nearshore springs, with a significant concentration in the Mediterranean region. The accuracy of each spring's location was verified using Google Earth. To provide context, various geological, hydrological, climatic, land use, and oceanic variables of the coastal watersheds where the springs are located (listed in the Excel file "CWD") were extracted from available global datasets. The inventoried springs and related coastal watersheds are also provided in ESRI shapefile format for quick visualization in GIS platforms. 
Most of these springs are located in Europe and North America, with fewer found in Africa, South America, and southern Asia. This dataset is valuable for hydrogeologists investigating the dynamics of coastal springs across diverse climatic, hydrological, and hydrogeological settings. By analysing the context of these coastal springs, researchers and water managers can identify potential zones for coastal springs and incorporate them into water resource assessments and vulnerability studies. Additionally, the dataset serves as a crucial resource for calibrating and validating geospatial methods used for identifying springs, such as remote sensing techniques. This dataset is intended to serve as a foundational resource for the development of a more detailed global inventory of coastal springs, and it welcomes contributions and updates from researchers worldwide.
DOI: 10.15468/dl.am99ep
title: Occurrence Download

description: A dataset containing 2291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 2291 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004464-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fz7zhm7x95.1
title: Sample Size Calculations for Pathogen Variant Surveillance in the Presence of Biological and Systematic Biases. Wohl et al.

description: Data S3. Variant Sampling Workbook.
DOI: 10.17632/2nnt4ws67x.1
title: Country based global distribution of phytomanaged polluted fields using aromatic plants dataset.

description: World geographical distribution of phytomanaged polluted sites in the last 10 years
DOI: 10.17632/t3v839pd2t.3
title: Developmental Endothelial Locus-1 as a Potential Biomarker for the Formation and Progression of Intracranial Aneurysm

description: The raw data of this study was deposited here, containing the ELISA data, qPCR data, the data and images about the function of HUVECs among different groups.
DOI: 10.17632/g48bpt75v5.1
title: Part 4 of data for Elizondo et al Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice

description: Part 4 of data for Elizondo et al "Adipose Tissue Macrophage Transglutaminase 2 and the Inflammation of Diet-Induced Obese Male Mice”
DOI: 10.5281/zenodo.14700440
title: Metadata-Nishisaka_etal_2025

description: Metadata of dilution-to-extinction bioassay.
DOI: 10.5281/zenodo.14700441
title: Metadata-Nishisaka_etal_2025

description: Metadata of dilution-to-extinction bioassay.
DOI: 10.17632/k4jn48w5gb.1
title: How heat stress affects seminal quality of New Zealand White rabbits

description: This study aimed to investigate how heat stress impacts seminal and biochemical plasma parameters in New Zealand White rabbits. The temperature and humidity levels within the installations were recorded and the temperature-humidity index was calculated to determine whether there was heat stress. Semen samples were collected from twenty male rabbits and evaluated by seminal (presence or absence of gel plug, semen volume, color, aspect, vigor, motility, and concentration) and biochemical parameters (glucose, fructose, citric acid, total cholesterol, total proteins, sodium, and chloride concentrations), and seminal protein profile by Nano UPLC-MS/MS.
DOI: 10.17632/xz8by36psx.1
title: LINF_140010600

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ytp3xcf84f.1
title: LINF_140012500

description: Ketoacyl-CoA synthase | Fatty acid elongase | ELO-3; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j83n7hbvst.1
title: [Dataset] Predictions and observations of delta morphology using the quantitative Galloway triangle

description: We provide predictions of delta morphology with the quantitative Galloway triangle (Niehuis et al., 2020). We compare these predictions with delta morphology observations from a new methodology that uses the quantitative Galloway triangle.
DOI: 10.17632/j83n7hbvst.2
title: [Dataset] Predictions and observations of delta morphology using the quantitative Galloway triangle

description: We provide predictions of delta morphology with the quantitative Galloway triangle (Niehuis et al., 2020). We compare these predictions with delta morphology observations from a new methodology that uses the quantitative Galloway triangle.
DOI: 10.17632/j83n7hbvst.3
title: [Dataset] Predictions and observations of delta morphology using the quantitative Galloway triangle

description: We provide predictions of delta morphology with the quantitative Galloway triangle (Niehuis et al., 2020). We compare these predictions with delta morphology observations from a new methodology that uses the quantitative Galloway triangle.
DOI: 10.5281/zenodo.14607316
title: Data and code for: Delineating ecologically distinct groups for annual cycle management of a declining shorebird

description: Cleaned data and code used to conduct analyses for Knight et al. 2025. Delineating ecologically distinct groups for annual cycle management of a declining shorebird. Journal of Applied Ecology.

Data provided is daily locations for 148 individual long-billed curlews (Numenius americanus) that have been interpolated from high-resolution Argos or GPS satellite tags. Data have been segmented into seasons and migration stopovers following the methods described in the manuscript.

Scripts are available in the compressed "code" folder and should be run in numbered order using the "LBCU_FilteredData_Segmented_Manuscript.csv" input data file and the compressed AtlasRegionsShp folder provided in this repository. Running this code will will download additional geospatial data from eBird, Google Earth Engine, and the National Oceanic and Atmospheric Administration, some of which will require registering for accounts to access the data.

The compressed "GroupPolygons" folder is the final management regions for long-billed curlews recommended by the paper.