cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8962004
title: Preference-based Serial Decision-maing

description: Behavioral results of Tasks and Questionnaires.
DOI: 10.6084/m9.figshare.8961671
title: Detection of Borrelia miyamotoi in Ixodes nipponensis in Korea

description: <b>Abstract</b> <b> </b> <b>Background</b> This study investigated <em>Borrelia</em> species prevalence in ticks from vegetation, through a molecular method, in Gwangju Metropolitan City, South Korea. <b> </b> <b>Methodology/Principal Findings</b> A total of 484 ticks were collected through flagging and dragging in a suburban area of Gwangju Metropolitan City, South Korea, in 2014. These ticks were morphologically identified and subjected to nested PCR, targeting <i>Borrelia</i>–specific CTP synthase (<i>pyrG</i>), outer surface protein A (<i>ospA</i>) and flagellin (<i>flaB</i>) genes. Molecular biological species identification of <i>Borrelia</i>-positive ticks was conducted via 16S rRNA PCR assays. Of the 484 ticks collected, 417 (86.2%) were identified as<i> Haemaphysalis longicornis</i>, 42 (8.7%) as <i>H. flava,</i> and 25 (5.2%) as <i>Ixodes nipponensis</i>. All the ixodid ticks containing <i>Borrelia</i> species bacteria were confirmed to be <i>I. nipponensis</i> adults, by both morphological and molecular methods. Of the 25 <i>I. nipponensis</i> ticks collected, four (16%) were positive for <i>Borrelia </i>species, three of which were <i>B. afzelii</i> and one<i> B. miyamotoi</i>. <b>Conclusions/Significance</b> Our study has shown the harboring of <i>B. miyamotoi </i>by <i>I. nipponensis</i> in South Korea, for the first time. Morphological and molecular genetic analyses revealed that, in South Korea,<i> I. nipponensis</i> could potentially transmit <i>B. miyamotoi </i>to humans.
DOI: 10.6084/m9.figshare.8962004.v1
title: Preference-based Serial Decision-maing

description: Behavioral results of Tasks and Questionnaires.
DOI: 10.6084/m9.figshare.8960924
title: B1_FRRP190009089-1a_1.fq.gz

description: 从转录组水平分析大肠杆菌基因的变化
DOI: 10.6084/m9.figshare.8961671.v1
title: Detection of Borrelia miyamotoi in Ixodes nipponensis in Korea

description: <b>Abstract</b> <b> </b> <b>Background</b> This study investigated <em>Borrelia</em> species prevalence in ticks from vegetation, through a molecular method, in Gwangju Metropolitan City, South Korea. <b> </b> <b>Methodology/Principal Findings</b> A total of 484 ticks were collected through flagging and dragging in a suburban area of Gwangju Metropolitan City, South Korea, in 2014. These ticks were morphologically identified and subjected to nested PCR, targeting <i>Borrelia</i>–specific CTP synthase (<i>pyrG</i>), outer surface protein A (<i>ospA</i>) and flagellin (<i>flaB</i>) genes. Molecular biological species identification of <i>Borrelia</i>-positive ticks was conducted via 16S rRNA PCR assays. Of the 484 ticks collected, 417 (86.2%) were identified as<i> Haemaphysalis longicornis</i>, 42 (8.7%) as <i>H. flava,</i> and 25 (5.2%) as <i>Ixodes nipponensis</i>. All the ixodid ticks containing <i>Borrelia</i> species bacteria were confirmed to be <i>I. nipponensis</i> adults, by both morphological and molecular methods. Of the 25 <i>I. nipponensis</i> ticks collected, four (16%) were positive for <i>Borrelia </i>species, three of which were <i>B. afzelii</i> and one<i> B. miyamotoi</i>. <b>Conclusions/Significance</b> Our study has shown the harboring of <i>B. miyamotoi </i>by <i>I. nipponensis</i> in South Korea, for the first time. Morphological and molecular genetic analyses revealed that, in South Korea,<i> I. nipponensis</i> could potentially transmit <i>B. miyamotoi </i>to humans.
DOI: 10.6084/m9.figshare.8960897
title: Datasheets on Mass Spectrometry from Temporary adhesion of the proseriate flatworm <i>Minona ileanae</i>

description: Overview of Mass Spectrometry results; details on the identification of peptides of footprints
DOI: 10.6084/m9.figshare.8960897.v1
title: Datasheets on Mass Spectrometry from Temporary adhesion of the proseriate flatworm <i>Minona ileanae</i>

description: Overview of Mass Spectrometry results; details on the identification of peptides of footprints
DOI: 10.6084/m9.figshare.8960891
title: Supplementary data S1 on gene selection for expression screening and differential RNA-seq from Temporary adhesion of the proseriate flatworm <i>Minona ileanae</i>

description: Excel sheets with data on in situ hybridization screen gene selection, datasheets on differential gene expression (adj.p-value &lt; 0,01) and adj.p-value&lt;0,01 FC&gt;3
DOI: 10.6084/m9.figshare.8960891.v1
title: Supplementary data S1 on gene selection for expression screening and differential RNA-seq from Temporary adhesion of the proseriate flatworm <i>Minona ileanae</i>

description: Excel sheets with data on in situ hybridization screen gene selection, datasheets on differential gene expression (adj.p-value &lt; 0,01) and adj.p-value&lt;0,01 FC&gt;3
DOI: 10.6084/m9.figshare.8960870
title: Source code for Table 1 from A methodology for identifying optimum vibration absorbers with a reaction mass

description: Matlab code for obtaining the results in Table 1
DOI: 10.6084/m9.figshare.8960867
title: Source code for Table 3 from A methodology for identifying optimum vibration absorbers with a reaction mass

description: Matlab code for obtaining the results in Table 3
DOI: 10.6084/m9.figshare.8960870.v1
title: Source code for Table 1 from A methodology for identifying optimum vibration absorbers with a reaction mass

description: Matlab code for obtaining the results in Table 1
DOI: 10.6084/m9.figshare.8960867.v1
title: Source code for Table 3 from A methodology for identifying optimum vibration absorbers with a reaction mass

description: Matlab code for obtaining the results in Table 3
DOI: 10.6084/m9.figshare.8960213
title: Supplementary Material for: Early versus Delayed Fortification of Human Milk in Preterm Infants: A Systematic Review

description: Expressed breast milk (EBM) is commonly supplemented with commercially prepared human milk fortifier to meet the additional nutritional needs of preterm infants. The optimal milk intake at which to introduce fortification is unknown. The objective of this systematic review was to compare the effect of early fortification (EF) versus that of delayed introduction of human milk fortifier (DF) on short-term outcomes including growth, feeding intolerance, length of hospital stay, and maturity at discharge in very-low-birth-weight infants. The search was carried out until March 2019 using 5 electronic databases (PubMed, Ovid Medline, Web of Science, Ovid Embase, and the Cochrane Library). The search was supplemented with a search of the clinical trial registry and reference lists. Eligible studies involved randomized controlled trials that had been designed to compare EF against DF using multi-nutrient fortifier for infants of a birth weight of &lt;1,500 g who were fed exclusively or predominantly EBM. Four authors independently screened the studies for eligibility. A total of 1,972 articles were screened; 2 studies met the inclusion criteria and were included with a total number of participants of 171. The definition of EF and DF was not consistent between the 2 studies. There was no significant impact of EF versus DF on all outcomes. In conclusion, current data are limited and do not provide evidence on the optimal time to start fortification. The definition of EF and DF needs to be agreed upon and further larger randomized controlled trials are required.
DOI: 10.6084/m9.figshare.8960150
title: Data from Stier et al. 2019 (Plastic but repeatable: rapid adjustments of mitochondrial function and density during reproduction in a wild bird species)

description: Excel file containing the dataset used in <b>Stier et al. 2019: Plastic but repeatable: rapid adjustments of mitochondrial function and density during reproduction in a wild bird species.</b><b>Details about variables are included below the data<br></b>
DOI: 10.6084/m9.figshare.8960078
title: FCM.xls

description: In Equatorial Guinea, malaria continues to be one of the main causes of morbidity and mortality among children. The National Therapeutic Guide established artesunate-amodiaquine (ASAQ) as first-line treatment for uncomplicated malaria, but compliance with this treatment is low. The aim of this study was to assess, for the first time, the performance of public healthcare workers in the diagnosis and treatment of uncomplicated malaria, their compliance with first-line Malaria National Therapeutic Guide and the associated factors.
DOI: 10.6084/m9.figshare.8960078.v1
title: FCM.xls

description: In Equatorial Guinea, malaria continues to be one of the main causes of morbidity and mortality among children. The National Therapeutic Guide established artesunate-amodiaquine (ASAQ) as first-line treatment for uncomplicated malaria, but compliance with this treatment is low. The aim of this study was to assess, for the first time, the performance of public healthcare workers in the diagnosis and treatment of uncomplicated malaria, their compliance with first-line Malaria National Therapeutic Guide and the associated factors.
DOI: 10.6084/m9.figshare.8959529
title: Data for Tract-based Fractional Anisotropy predicts WAIS Intelligence Quotient indices and subtest performance

description: The sample included 83 healthy right-handed participants who are part of the Cuban Project of Human Brain Mapping with an average age of 35.06 ± 10.21 years and 12.12 ± 2.46 years of education. The recruitment was based on a completely randomized sampling using the identity card database stratified by age, gender and outward ethnic features of 2,109 subjects of the whole population of La Lisa municipality (more than 30,000) in La Habana. It’s important to note that this municipality was selected because closely matched the general statistics of the Cuban population according to the national census of the republic of Cuba http://www.one.cu/. The present study was carried out in accordance with The Code of Ethics of the World Medical Association, Declaration of Helsinki (W.M., 1996), and the experimental protocols were approved by the Ethics Committee of the Cuban Neuroscience Center. The recruitment procedure did not involve any kind of reward but only feedback about the results and participants were included in the study after accepting and signing the informed consent . A multiple ROIs approach was used for the reconstruction of the tracts of interest because it has been shown that the two-ROI and brute-force approach could effectively reduce the sensitivity to the noise and ROI placement (Huang, Zhang, van Zijl, & Mori, 2004). The fiber tracking was performed on all voxels of the brain, and fibers that penetrated the previously defined ROIs were assigned to the specific tracts associated with each pair of ROIs.Definition of ROIs for studied tracts was made by replicating a set of predefined ROI by Mori et al. (2002) that was employed successfully in subsequent work (Góngora, Domínguez, & Bobes, 2016; Hua et al., 2008; Wakana et al., 2007; Wakana et al., 2005; Wakana, Jiang, Nagae-Poetscher, Van Zijl, & Mori, 2004). The following procedure replicated the methodology published by Góngora et al., 2016. These ROIs were drawn using the program MRIcron (http://www.mricron.com) on a reference anatomical image with a spatial resolution of 1 x 1 x 1 mm3 in stereotactic space of the Montreal Neurological Institute (MNI) (Evans et al., 1993). The ROIs were then transformed to each individual brain space automatically, using a programmed routine in Matlab. The ROIs were defined for the following tracts: anterior thalamic radiation (ATR), cingulate gyrus associated cingulum (CGC), hippocampal gyrus associated cingulum (CGH), corticospinal tract (CST), inferior fronto-occipital fasciculus (IFO), inferior longitudinal fasciculus (ILF), superior longitudinal fasciculus (SLF), uncinate fasciculus (UNC), forceps major (Fmj) and forceps minor (Fmn). The resulting path of these tracts was visually inspected and corrected in cases where necessary, by the exclusion of fibers that did not belongs anatomically to tracts. For the statistical analysis we estimate the FA average between the corresponding bilateral tracts. <br> <br>
DOI: 10.6084/m9.figshare.8959529.v1
title: Data for Tract-based Fractional Anisotropy predicts WAIS Intelligence Quotient indices and subtest performance

description: The sample included 83 healthy right-handed participants who are part of the Cuban Project of Human Brain Mapping with an average age of 35.06 ± 10.21 years and 12.12 ± 2.46 years of education. The recruitment was based on a completely randomized sampling using the identity card database stratified by age, gender and outward ethnic features of 2,109 subjects of the whole population of La Lisa municipality (more than 30,000) in La Habana. It’s important to note that this municipality was selected because closely matched the general statistics of the Cuban population according to the national census of the republic of Cuba http://www.one.cu/. The present study was carried out in accordance with The Code of Ethics of the World Medical Association, Declaration of Helsinki (W.M., 1996), and the experimental protocols were approved by the Ethics Committee of the Cuban Neuroscience Center. The recruitment procedure did not involve any kind of reward but only feedback about the results and participants were included in the study after accepting and signing the informed consent . A multiple ROIs approach was used for the reconstruction of the tracts of interest because it has been shown that the two-ROI and brute-force approach could effectively reduce the sensitivity to the noise and ROI placement (Huang, Zhang, van Zijl, & Mori, 2004). The fiber tracking was performed on all voxels of the brain, and fibers that penetrated the previously defined ROIs were assigned to the specific tracts associated with each pair of ROIs.Definition of ROIs for studied tracts was made by replicating a set of predefined ROI by Mori et al. (2002) that was employed successfully in subsequent work (Góngora, Domínguez, & Bobes, 2016; Hua et al., 2008; Wakana et al., 2007; Wakana et al., 2005; Wakana, Jiang, Nagae-Poetscher, Van Zijl, & Mori, 2004). The following procedure replicated the methodology published by Góngora et al., 2016. These ROIs were drawn using the program MRIcron (http://www.mricron.com) on a reference anatomical image with a spatial resolution of 1 x 1 x 1 mm3 in stereotactic space of the Montreal Neurological Institute (MNI) (Evans et al., 1993). The ROIs were then transformed to each individual brain space automatically, using a programmed routine in Matlab. The ROIs were defined for the following tracts: anterior thalamic radiation (ATR), cingulate gyrus associated cingulum (CGC), hippocampal gyrus associated cingulum (CGH), corticospinal tract (CST), inferior fronto-occipital fasciculus (IFO), inferior longitudinal fasciculus (ILF), superior longitudinal fasciculus (SLF), uncinate fasciculus (UNC), forceps major (Fmj) and forceps minor (Fmn). The resulting path of these tracts was visually inspected and corrected in cases where necessary, by the exclusion of fibers that did not belongs anatomically to tracts. For the statistical analysis we estimate the FA average between the corresponding bilateral tracts. <br> <br>
DOI: 10.6084/m9.figshare.8959499
title: workshop2

description: Workshop
DOI: 10.6084/m9.figshare.8957879
title: Determination of oseltamivir phosphate and its metabolite with other pharmaceuticals in surface waters using solid phase extraction and isotope dilution liquid chromatography/tandem mass spectrometry

description: Solid phase extraction and isotope dilution (ID) liquid chromatography/tandem mass spectrometry (LC/MS/MS) were used to quantify concentrations of oseltamivir phosphate and its metabolite (oseltamivir carboxylate) in addition to four pharmaceuticals (caffeine, carbamazepine, triclosan, triclocarban) in surface waters. Results simultaneously and effectively elucidate the occurrence, fate, and effects of those compounds in surface waters. Higher response intensities of target compounds were obtained using an ultra-purified water/methanol gradient containing 0.01% formic acid with 0.5 mM ammonium acetate as the mobile phase. Methanol/ethyl acetate = 1:4 (v/v) efficiently eluted target compounds from a hydrophilic–lipophilic balanced polymer cartridge. Sample extraction at pH 2.0–3.5 did not affect recovery. This developed method showed satisfactory linearity (<i>r</i><sup>2</sup> &gt; 0.9957) and accurate quantification using ID method with each labelled internal compound. The recoveries from the spiked ultra-purified water and river water samples were 81–127% (1.2–16% relative standard deviation, RSD) and 89–106% (0.4–19%RSD), respectively. The method detection limit was found as 0.2–1.9 ng L<sup>−1</sup> from spiked levels of lower concentrations in ultra-purified water. This method, when applied to samples from a small river basin in Akita prefecture, Japan, detected most target compounds at low to high nanogram-per-litre concentrations.
DOI: 10.6084/m9.figshare.8957879.v1
title: Determination of oseltamivir phosphate and its metabolite with other pharmaceuticals in surface waters using solid phase extraction and isotope dilution liquid chromatography/tandem mass spectrometry

description: Solid phase extraction and isotope dilution (ID) liquid chromatography/tandem mass spectrometry (LC/MS/MS) were used to quantify concentrations of oseltamivir phosphate and its metabolite (oseltamivir carboxylate) in addition to four pharmaceuticals (caffeine, carbamazepine, triclosan, triclocarban) in surface waters. Results simultaneously and effectively elucidate the occurrence, fate, and effects of those compounds in surface waters. Higher response intensities of target compounds were obtained using an ultra-purified water/methanol gradient containing 0.01% formic acid with 0.5 mM ammonium acetate as the mobile phase. Methanol/ethyl acetate = 1:4 (v/v) efficiently eluted target compounds from a hydrophilic–lipophilic balanced polymer cartridge. Sample extraction at pH 2.0–3.5 did not affect recovery. This developed method showed satisfactory linearity (<i>r</i><sup>2</sup> &gt; 0.9957) and accurate quantification using ID method with each labelled internal compound. The recoveries from the spiked ultra-purified water and river water samples were 81–127% (1.2–16% relative standard deviation, RSD) and 89–106% (0.4–19%RSD), respectively. The method detection limit was found as 0.2–1.9 ng L<sup>−1</sup> from spiked levels of lower concentrations in ultra-purified water. This method, when applied to samples from a small river basin in Akita prefecture, Japan, detected most target compounds at low to high nanogram-per-litre concentrations.
DOI: 10.6084/m9.figshare.8959499.v5
title: workshop2

description: Workshop
DOI: 10.6084/m9.figshare.8959499.v4
title: Motives behind Facebook usage: a study of 11587 users worldwide

description: <b>Marta Kowal<sup>1*</sup>, Piotr Sorokowski<sup>1</sup>, Agnieszka Sorokowska<sup>1</sup>, Małgorzata Dobrowolska<sup>2</sup>, Katarzyna Pisanski<sup>1</sup>, Anna Oleszkiewicz<sup>1, 51</sup>, Toivo Aavik<sup>3</sup>, Grace Akello<sup>5</sup>, Charlotte Alm<sup>6</sup>, Naumana Amjad<sup>7</sup>, Afifa Anjum<sup>7</sup>, Kelly Asao<sup>8</sup>, Chiemezie S. Atama<sup>9</sup>, Derya Atamtürk Duyar<sup>10</sup>, Richard Ayebare<sup>11</sup>, Mons Bendixen<sup>12</sup>, Aicha Bensafia<sup>15</sup>, Boris Bizumic<sup>14</sup>, Mahmoud Boussena<sup>15</sup>, David M. Buss<sup>8</sup>, Marina Butovskaya<sup>16</sup>, Seda Can<sup>17</sup>, Katarzyna Cantarero<sup>18</sup>, Antonin Carrier<sup>19</sup>, Hakan Cetinkaya<sup>17</sup>, Daniel Conroy-Beam<sup>20</sup>, Marco A. Correa Varella<sup>21</sup>, Rosa M. Cueto<sup>22</sup>, Marcin Czub<sup>1</sup>, Daria Dronova<sup>16</sup>, Seda Dural<sup>17</sup>, Izzet Duyar<sup>10</sup>, Berna Ertugrul<sup>10</sup>, Agustín Espinosa<sup>22</sup>, Ignacio Estevan<sup>23</sup>, Carla S. Esteves<sup>24</sup>, Tomasz Frąckowiak<sup>1</sup>, Jorge Contreras-Graduño<sup>25</sup>, Farida Guemaz<sup>13</sup>, Ivana Hromatko<sup>28</sup>, Chin-Ming Hui<sup>29</sup>, Herak Iskra<sup>19</sup>, Jas L. Jaafar<sup>30</sup>, Feng Jiang<sup>31</sup>, Konstantinos Kafetsios<sup>32</sup>, Tina Kavcic<sup>33</sup>, Leif Edward Ottesen Kennair<sup>12</sup>, Nicolas Kervyn<sup>19</sup>, Nils C. Köbis<sup>34</sup>, András Láng<sup>36</sup>, Georgina R. Lennard<sup>14</sup>, Ernesto León<sup>22</sup>, Torun Lindholm<sup>6</sup>, Giulia Lopez<sup>37</sup>, Mohammad Madallh Alhabahba<sup>38</sup>, Alvaro Mailhos<sup>23</sup>, Zoi Manesi<sup>34</sup>, Rocio Martinez<sup>39</sup>, Sarah L. McKerchar<sup>14</sup>, Norbert Meskó<sup>36</sup>, Girishwar Misra<sup>40</sup>, Hoang Moc Lan<sup>41</sup>, Conal Monaghan<sup>14</sup>, Emanuel C. Mora<sup>42</sup>, Alba Moya-Garofano<sup>39</sup>, Bojan Musil<sup>27</sup>, Jean C. Natividade<sup>43</sup>, George Nizharadze<sup>44</sup>, Elisabeth Oberzaucher<sup>45</sup>, Mohd S. Omar Fauzee<sup>46</sup>, Ernest Onyishi<sup>9</sup>, Baris Özener<sup>10</sup>, Ariela F. Pagani<sup>37</sup>, Vilmante Pakalniskiene<sup>47</sup>, Miriam Parise<sup>37</sup>, Farid Pazhoohi<sup>48</sup>, Mariia Perun<sup>49</sup>, Annette Pisanski<sup>42, 50</sup>, Nejc Plohl<sup>27</sup>, Camelia Popa<sup>21</sup>, Pavol Prokop<sup>52, 53</sup>, Muhammad Rizwan<sup>54</sup>, Mario Sainz<sup>4</sup>, Svjetlana Salkičević<sup>28</sup>, Ruta Sargautyte<sup>47</sup>, Susanne Schmehl<sup>45</sup>, Oksana Senyk<sup>49</sup>, Rizwana Shaikh<sup>55</sup>, Shivantika Sharad<sup>56</sup>, Franco Simonetti<sup>57</sup>, Meri Tadinac<sup>28</sup>, Truong Thi Khanh Ha<sup>41</sup>, Trinh Thi Linh<sup>41</sup>, Karina Ugalde González<sup>58</sup>, Nguyen Van Luot<sup>41</sup>, Christin-</b> <b>Melanie Vauclair<sup>24</sup>, Luis D. Vega Araya<sup>58</sup>, Gyesook Yoo<sup>60</sup>, Stanislava Yordanova Stoyanova<sup>26</sup>, Zainab F. Zadeh<sup>59</sup>, Maja Zupančič<sup>35</sup>.</b>
DOI: 10.6084/m9.figshare.8957753
title: Additional file 2: of An information-motivation-behavioural skills analysis of long-lasting insecticidal net use among pregnant women in a hospital in North-Eastern Nigeria

description: Study Dataset. Spreadsheet of the raw data collected and analyzed in this study. To maintain respondentsâ anonymity, only two indirect identifiers were retained (age and residence type). (XLSX 46 kb)
DOI: 10.6084/m9.figshare.8957753.v1
title: Additional file 2: of An information-motivation-behavioural skills analysis of long-lasting insecticidal net use among pregnant women in a hospital in North-Eastern Nigeria

description: Study Dataset. Spreadsheet of the raw data collected and analyzed in this study. To maintain respondentsâ anonymity, only two indirect identifiers were retained (age and residence type). (XLSX 46 kb)
DOI: 10.6084/m9.figshare.8957732
title: Additional file 4: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: MatHaz code. (ZIP 11 kb)
DOI: 10.6084/m9.figshare.8957729
title: MOESM9 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 9: Code S4. Code S4 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S5 to generate the raw image assets need to construct Fig. 6 in the main text.
DOI: 10.6084/m9.figshare.8957732.v1
title: Additional file 4: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: MatHaz code. (ZIP 11 kb)
DOI: 10.6084/m9.figshare.8957726
title: Additional file 3: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel file containing the topography of the CLV area written in ASCII format. (XLSX 1035 kb)