cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3827331.v1
title: Nest contents count data for Aztec Zawn, Lundy, 2015 and 2016

description: <br>This is an Excel file with data from 2015 and 2016 collected by three observers. Notes are on the first sheet explaining the data and who the observers are. But, the data is basically clutch size data collected using methods outlined in Dickins, T.E. (2016.) Average clutch size for a Kittiwake <i>Rissa tridactyla</i> colony on Lundy. Devon Birds, 69 (1), 7-13. This paper reports on the 2015 data.<br>Please note that the nest codes for 2015 and 2016 are different, such that nest 1 in 2015 is not nest 1 in 2016 and so forth. This is due to changes in colony structure.
DOI: 10.7910/dvn/v1rjpf/ryrx7s
title: iqa20160701_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ogo7cz
title: iqa20150429_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ri4icf
title: iqa20160802_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827331.v2
title: Nest contents count data for Aztec Zawn, Lundy, 2015 and 2016

description: <br>This is an Excel file with data from 2015 and 2016 collected by three observers. Notes are on the first sheet explaining the data and who the observers are. But, the data is basically clutch size data collected using methods outlined in Dickins, T.E. (2016.) Average clutch size for a Kittiwake <i>Rissa tridactyla</i> colony on Lundy. Devon Birds, 69 (1), 7-13. This paper reports on the 2015 data.<br>Please note that the nest codes for 2015 and 2016 are different, such that nest 1 in 2015 is not nest 1 in 2016 and so forth. This is due to changes in colony structure.
DOI: 10.6084/m9.figshare.3827331.v4
title: Nest contents count data for Aztec Zawn, Lundy, 2015 and 2016

description: <br>This is an Excel file with data from 2015 and 2016 collected by three observers. Notes are on the first sheet explaining the data and who the observers are. But, the data is basically clutch size data collected using methods outlined in Dickins, T.E. (2016.) Average clutch size for a Kittiwake <i>Rissa tridactyla</i> colony on Lundy. Devon Birds, 69 (1), 7-13. This paper reports on the 2015 data.<br>Please note that the nest codes for 2015 and 2016 are different, such that nest 1 in 2015 is not nest 1 in 2016 and so forth. This is due to changes in colony structure.
DOI: 10.7910/dvn/v1rjpf/1vi0bo
title: iqa20161108_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827331.v3
title: Nest contents count data for Aztec Zawn, Lundy, 2015 and 2016

description: <br>This is an Excel file with data from 2015 and 2016 collected by three observers. Notes are on the first sheet explaining the data and who the observers are. But, the data is basically clutch size data collected using methods outlined in Dickins, T.E. (2016.) Average clutch size for a Kittiwake <i>Rissa tridactyla</i> colony on Lundy. Devon Birds, 69 (1), 7-13. This paper reports on the 2015 data.<br>Please note that the nest codes for 2015 and 2016 are different, such that nest 1 in 2015 is not nest 1 in 2016 and so forth. This is due to changes in colony structure.
DOI: 10.7910/dvn/v1rjpf/3n6uxq
title: iqa20161112_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/7zfmey
title: iqa20150607_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/mwwzkx
title: iqa20150610_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827295.v1
title: Photographs of Aztec Zawn colony, Lundy, 14-17 June 2016

description: Photographs of the Kittiwake colony at Aztec Zawn on Lundy, taken between 14 and 17 June 2016. This was the second year of formal study. There are colony and individual nest shots, and also some images of loafing birds near to the colony.
DOI: 10.7910/dvn/v1rjpf/aoqnp5
title: iqa20150914_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/bqsnor
title: iqa20161028_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/8k24mk
title: iqa20160712_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/f7ycpa
title: iqa20150710_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/zxcw3u
title: iqa20160921_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/awedub
title: iqa20150917_03.txt.gz

description: :unav
DOI: 10.21227/phdc-s938
title: FallAllD: A Comprehensive Dataset of Human Falls and Activities of Daily Living

description: DescriptionFallAllD is a large open dataset of human falls and activities of daily living simulated by 15 participants. FallAllD consists of 26420 files collected using three data-loggers worn on the waist, wrist and neck of the subjects. Motion signals are captured using an accelerometer, gyroscope, magnetometer and barometer with efficient configurations that suit the potential applications e.g. fall detection, fall prevention and human activity recognition.FallAllD is described in detail in the following journal article:M. Saleh, M. Abbas and R. L. B. Jeannès, "FallAllD: An Open Dataset of Human Falls and Activities of Daily Living for Classical and Deep Learning Applications," in IEEE Sensors Journal, doi: 10.1109/JSEN.2020.3018335.Data AcquisitionThree identical data-loggers developed by the society RF-Track have been used. They are waist, wrist and neck-worn devices equipped with:· LSM9DS1: 3-axial accelerometer, 3-axial gyroscope and 3-axial magnetometer.· MS5607-02BA03: barometer.Sensors configurations· Accelerometer: Sampling frequency = 238 Hz. Measurement range = ±8 g.· Gyroscope: Sampling frequency = 238 Hz. Angular rate = ± 2000 dps.· Magnetometer: Sampling frequency = 80 Hz. Full scale magnetic field = ±4 Gauss.· Barometer: Sampling frequency = 10 Hz.
DOI: 10.6084/m9.figshare.3827283.v1
title: Photographs of Aztec Zawn colony, Lundy, 4-12 June 2015

description: Photographs taken as a part of our first year of formal study of the Kittiwake colony at Aztec Zawn on Lundy. There are colony shots, nest shots and some behavioural shots, including predation.
DOI: 10.7910/dvn/v1rjpf/h3h7bx
title: iqa20150616_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/5cueth
title: iqa20161202_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/jk1h83
title: iqa20151015_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827268
title: Photographs of Aztec Zawn colony, Lundy, April 2014

description: Photographs of the colony at Aztec Zawn on the west coast of Lundy, taken in April 2014 as a final scoping exercise before embarking on formal study.
DOI: 10.7910/dvn/v1rjpf/yrtm2l
title: iqa20150619_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827268.v1
title: Photographs of Aztec Zawn colony, Lundy, April 2014

description: Photographs of the colony at Aztec Zawn on the west coast of Lundy, taken in April 2014 as a final scoping exercise before embarking on formal study.
DOI: 10.6084/m9.figshare.3827223
title: Photographs of Aztec Zawn colony, Lundy, June 2013

description: Photographs of the Aztec Zawn Kittiwake colony on the west coast of Lundy, taken in June 2013. They were taken whilst the colony was being scoped for future study.
DOI: 10.7910/dvn/v1rjpf/fz94qp
title: iqa20160619_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827223.v2
title: Photographs of Aztec Zawn colony, Lundy, June 2013

description: Photographs of the Aztec Zawn Kittiwake colony on the west coast of Lundy, taken in June 2013. They were taken whilst the colony was being scoped for future study.
DOI: 10.7910/dvn/v1rjpf/rovoyq
title: iqa20160521_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827223.v1
title: Photographs of Aztec Zawn colony, Lundy, 2013

description: Photographs of the Aztec Zawn Kittiwake colony on the west coast of Lundy, taken in June 2013. They were taken whilst the colony was being scoped for future study.
DOI: 10.7910/dvn/v1rjpf/5pwqbm
title: iqa20160928_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827199
title: Photographs of Aztec Zawn colony, Lundy, July 2012

description: Photographs of a Kittiwake (Rissa tridactyla) colony on the west coast of Lundy taken in July 2012 during an informal survey effort to scope out the colony for future work.
DOI: 10.7910/dvn/v1rjpf/2iuyln
title: iqa20160616_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/g72wtf
title: iqa20150114_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827199.v1
title: Photographs of Aztec Zawn colony, Lundy, July 2012

description: Photographs of a Kittiwake (Rissa tridactyla) colony on the west coast of Lundy taken in July 2012 during an informal survey effort to scope out the colony for future work.
DOI: 10.7910/dvn/v1rjpf/o7ziqm
title: iqa20160624_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/vqbskp
title: iqa20151110_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/uy1vni
title: iqa20160604_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827184
title: Supplementary Material for: Clinical and Molecular Characterisation of Children with Pierre Robin Sequence and Additional Anomalies

description: Pierre Robin Sequence (PRS) is usually classified into syndromic and nonsyndromic groups, with a further subclassification of the nonsyndromic group into isolated PRS and PRS with additional anomalies (PRS-Plus). The aim of this research is to provide an accurate phenotypic characterisation of nonsyndromic PRS, specifically the PRS-Plus subgroup. We sought to examine the frequency of sequence variants in previously defined conserved noncoding elements (CNEs) in the putative enhancer region upstream of <i>SOX9</i>, the regulation of which has been associated with PRS phenotypes. We identified 141 children with nonsyndromic PRS at the Royal Children's Hospital, Melbourne from 1985 to 2012 using 2 databases. Clinical and demographic data were extracted by file review and children categorized as ‘isolated PRS' or ‘PRS-Plus'. A subset of children with PRS-Plus was selected for detailed phenotyping and DNA sequencing of the upstream <i>SOX9 </i>CNEs. We found 83 children with isolated PRS and 58 with PRS-Plus. The most common PRS-Plus malformations involved the musculoskeletal and ocular systems. The most common coexisting craniofacial malformation was choanal stenosis/atresia. We identified 10 children with a family history of PRS or cleft palate. We found a single nucleotide substitution in a putative <i>GATA1</i>-binding site in one patient, but it was inherited from his phenotypically unaffected mother. PRS-Plus represents a broad phenotypic spectrum with uncertain pathogenesis. Dysmorphology assessment by a clinical geneticist is recommended. <i>SOX9</i> CNE sequence variants are rare in our cohort and are unlikely to play a significant role in the pathogenesis of PRS-Plus.
DOI: 10.7910/dvn/v1rjpf/wdarhr
title: iqa20161230_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827184.v1
title: Supplementary Material for: Clinical and Molecular Characterisation of Children with Pierre Robin Sequence and Additional Anomalies

description: Pierre Robin Sequence (PRS) is usually classified into syndromic and nonsyndromic groups, with a further subclassification of the nonsyndromic group into isolated PRS and PRS with additional anomalies (PRS-Plus). The aim of this research is to provide an accurate phenotypic characterisation of nonsyndromic PRS, specifically the PRS-Plus subgroup. We sought to examine the frequency of sequence variants in previously defined conserved noncoding elements (CNEs) in the putative enhancer region upstream of <i>SOX9</i>, the regulation of which has been associated with PRS phenotypes. We identified 141 children with nonsyndromic PRS at the Royal Children's Hospital, Melbourne from 1985 to 2012 using 2 databases. Clinical and demographic data were extracted by file review and children categorized as ‘isolated PRS' or ‘PRS-Plus'. A subset of children with PRS-Plus was selected for detailed phenotyping and DNA sequencing of the upstream <i>SOX9 </i>CNEs. We found 83 children with isolated PRS and 58 with PRS-Plus. The most common PRS-Plus malformations involved the musculoskeletal and ocular systems. The most common coexisting craniofacial malformation was choanal stenosis/atresia. We identified 10 children with a family history of PRS or cleft palate. We found a single nucleotide substitution in a putative <i>GATA1</i>-binding site in one patient, but it was inherited from his phenotypically unaffected mother. PRS-Plus represents a broad phenotypic spectrum with uncertain pathogenesis. Dysmorphology assessment by a clinical geneticist is recommended. <i>SOX9</i> CNE sequence variants are rare in our cohort and are unlikely to play a significant role in the pathogenesis of PRS-Plus.
DOI: 10.7910/dvn/v1rjpf/ptvr0e
title: iqa20150806_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827151
title: Supplementary Material for: Renal Interstitial Fibrosis: An Imperfect Predictor of Kidney Disease Progression in Some Patient Cohorts

description: <b><i>Background:</i></b> The extent of interstitial fibrosis on kidney biopsy is regarded as a prognostic indicator and guide to treatment. Patients with extensive fibrosis are assigned to supportive treatments with the expectation that they have advanced beyond the point at which immunosuppressive or other disease-modifying therapies would be of benefit. Our study highlights some of the limitations of using interstitial fibrosis to predict who will develop end-stage renal disease (ESRD). <b><i>Methods:</i></b> Analysis of 434 consecutive renal biopsies performed between 2001 and 2012 at a single center. We assessed the influence of various clinical factors along with fibrosis as predictors of ESRD and dialysis-free survival in various patient groups. <b><i>Results:</i></b> Interstitial fibrosis performed well overall as a predictor of progression to dialysis. On average, patients with &gt;50% fibrosis progressed more rapidly than those with either 25-49 or 0-24% fibrosis with a median time to dialysis of 1.2, 6.5 and &gt;10 years, respectively. In contrast, interstitial fibrosis was of less value as a predictor of disease progression in a subset of cases that included patients over the age of 70 and those with diabetic nephropathy on biopsy. Surprisingly, 13.9% of patients with normal renal function had 25-49% fibrosis and 5% had more than 50% fibrosis on biopsy, and 5 years after undergoing biopsy 21% of patients with &gt;50% fibrosis still remained dialysis free. <b><i>Conclusion:</i></b> Renal fibrosis is an imperfect prognostic indicator for the development of ESRD and caution should be exercised in applying it too rigidly, especially in elderly or diabetic patients.
DOI: 10.7910/dvn/v1rjpf/c0mcp6
title: iqa20150608_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/4dg3qm
title: iqa20150110_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827142
title: Supplementary Material for: Analysis of Senescence-Related Differentiation Potentials and Gene Expression Profiles in Human Dental Pulp Stem Cells

description: <b><i>Introduction:</i></b> Dental pulp stem cell (DPSC)-mediated dental pulp regeneration is considered a promising method for the treatment of deep caries with pulpitis. However, mesenchymal stem cell (MSC) senescence is an adverse factor from the perspective of cell-based therapies. In this study, we investigated the characteristics and expression profiles of DPSCs from young and old donors. <b><i>Methods:</i></b> DPSCs from young and old donors were cultured in differentiation medium, and their differentiation potentials were assessed. Long noncoding RNA (LncRNA) microarray assays and a bioinformatic analysis were performed to investigate differences in LncRNA and mRNA expression profiles between DPSCs from young and old donors. <b><i>Results:</i></b> We found that DPSCs from young donors exhibited more powerful proliferation ability and greater osteogenic and adipogenic differentiation potentials than DPSCs from old donors. In DPSCs from young donors, numerous LncRNAs were significantly up- (n = 389) or down-regulated (n = 172) compared to DPSCs from old donors. Furthermore, 304 mRNAs were differentially expressed, including 247 up-regulated genes and 57 down-regulated genes in DPSCs from young donors. The bioinformatic analysis identified that several pathways may be associated with DPSC characteristics, such as those involved in the cell cycle and RNA transport, and revealed nuclear transcription factor Y subunit β, general transcription factor IIB, and nuclear receptor subfamily 3 group C member 1 as core regulatory factors and FR249114, FR299091, and ENST00000450004 as core LncRNAs. <b><i>Conclusions:</i></b> Our results indicated that senescence impaired the proliferation and differentiation potentials of DPSCs and that donor age is an important factor that affects their use for tooth regeneration. We also provide insight into the mechanisms responsible for senescence in DPSCs.
DOI: 10.7910/dvn/v1rjpf/j4ggds
title: iqa20161120_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827142.v1
title: Supplementary Material for: Analysis of Senescence-Related Differentiation Potentials and Gene Expression Profiles in Human Dental Pulp Stem Cells

description: <b><i>Introduction:</i></b> Dental pulp stem cell (DPSC)-mediated dental pulp regeneration is considered a promising method for the treatment of deep caries with pulpitis. However, mesenchymal stem cell (MSC) senescence is an adverse factor from the perspective of cell-based therapies. In this study, we investigated the characteristics and expression profiles of DPSCs from young and old donors. <b><i>Methods:</i></b> DPSCs from young and old donors were cultured in differentiation medium, and their differentiation potentials were assessed. Long noncoding RNA (LncRNA) microarray assays and a bioinformatic analysis were performed to investigate differences in LncRNA and mRNA expression profiles between DPSCs from young and old donors. <b><i>Results:</i></b> We found that DPSCs from young donors exhibited more powerful proliferation ability and greater osteogenic and adipogenic differentiation potentials than DPSCs from old donors. In DPSCs from young donors, numerous LncRNAs were significantly up- (n = 389) or down-regulated (n = 172) compared to DPSCs from old donors. Furthermore, 304 mRNAs were differentially expressed, including 247 up-regulated genes and 57 down-regulated genes in DPSCs from young donors. The bioinformatic analysis identified that several pathways may be associated with DPSC characteristics, such as those involved in the cell cycle and RNA transport, and revealed nuclear transcription factor Y subunit β, general transcription factor IIB, and nuclear receptor subfamily 3 group C member 1 as core regulatory factors and FR249114, FR299091, and ENST00000450004 as core LncRNAs. <b><i>Conclusions:</i></b> Our results indicated that senescence impaired the proliferation and differentiation potentials of DPSCs and that donor age is an important factor that affects their use for tooth regeneration. We also provide insight into the mechanisms responsible for senescence in DPSCs.
DOI: 10.6084/m9.figshare.3827124
title: Datasets

description: Dataset used for training and testing.training sets:Human: hg19.trainMouse: mm10.trainFruit fly: dm3.traintest sets:hg19.testnbt.test
DOI: 10.7910/dvn/v1rjpf/fyubno
title: iqa20150115_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/n1nsh6
title: iqa20150121_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827109
title: data.csv

description: wound-healing patent data
DOI: 10.6084/m9.figshare.3827109.v1
title: data.csv

description: wound-healing patent data
DOI: 10.7910/dvn/v1rjpf/bg5ilh
title: iqa20151125_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/q0eh9x
title: iqa20161201_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/bby4as
title: iqa20150418_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/svtkad
title: iqa20161103_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/3faeyv
title: iqa20160721_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/xozqgu
title: iqa20161216_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/5byb1o
title: iqa20161117_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/rafozv
title: iqa20150302_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/95eitp
title: iqa20150124_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/o7pjqw
title: iqa20161228_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/knkbya
title: iqa20151219_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/x24k0r
title: iqa20160826_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/kj3t0p
title: iqa20150713_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/lajtob
title: iqa20160906_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/136pxt
title: iqa20151021_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/yqn1ql
title: iqa20160723_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/cnkzra
title: iqa20150410_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/x3oxvi
title: iqa20151109_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/fjwztr
title: iqa20150816_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/r0parx
title: iqa20150305_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/x6cfvg
title: iqa20150127_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/vsiij0
title: iqa20160925_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/hkiovr
title: iqa20150126_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3827070
title: Diagnosing colorectal cancer and inflammatory bowel disease in primary care: The usefulness of tests for faecal haemoglobin, faecal calprotectin, anaemia and iron deficiency. A prospective study

description: <b>Objective:</b> Abdominal complaints are common reasons to consult primary care but they are seldom caused by colorectal cancer (CRC), high-risk adenomas (HRAs), or inflammatory bowel disease (IBD). Reliable diagnostic aids would be helpful in deciding which patients to refer for bowel imaging. Our aim was to assess the value of a faecal immunochemical test (FIT) and a faecal calprotectin (FC) test in detecting CRC, HRAs and IBD in primary care, and the value of combining these tests with anaemia and iron-deficiency tests. <b>Materials and methods:</b> This prospective study included 373 consecutive patients that received a FIT or a FC test ordered by a primary care physician. We collected samples for FITs, FC tests, full blood counts and iron-deficiency tests. Physicians were instructed to refer patients with a positive FIT or FC test (cut-off ≥100μg/g) for bowel imaging. The patients’ presenting symptoms were recorded. Patients were followed for 2 years. <b>Results:</b> The best test for detecting CRC and IBD was the combination of the FIT and haemoglobin concentration. This test had a sensitivity, specificity, positive predictive value and negative predictive value of 100%, 61.7%, 11.7% and 100%, respectively. The FIT detected a significantly larger proportion of CRC, HRAs and IBD than the FC test (0.92 versus 0.46, 95% confidence interval 0.22–0.67). <b>Conclusion:</b> A negative FIT combined with a normal haemoglobin concentration could rule out CRC and IBD with a high degree of safety. This could be useful in prioritising referrals for bowel imaging from primary care.
DOI: 10.7910/dvn/v1rjpf/0nymxc
title: iqa20160927_03.txt.gz

description: :unav