cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sp58mx
title: Occurrence Download

description: A dataset containing 529 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum phureja Juz. & Bukasov"
 ]
}

 The dataset includes 529 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169268-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7ufwy
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium rigidum Pomel"
 ]
}

 The dataset includes 78 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151345-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj8mbq
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-44.20258 27.62058,59.78091 27.62058,59.78091 69.19617,-44.20258 69.19617,-44.20258 27.62058))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phengaris arion (Linnaeus, 1758)"
 ]
}

 The dataset includes 321 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169273-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbnyfr
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiocarpaea cochlearioides (Murray) D.A.German & Al-Shehbaz"
 ]
}

 The dataset includes 51 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155948-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3t8rb
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus bohemicus Seidl, 1838",
 "Year 1970-2000"
 ]
}

 The dataset includes 330 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169275-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfnh3y
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scilla ×allenii (G.Nicholson) Speta",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 103 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155949-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e853h7
title: Occurrence Download

description: A dataset listing the 16 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Land-use and climate drive shifts in Bombus assemblage composition",
 "Geometry POLYGON((-130.64723 33.74421,-94.35277 33.74421,-94.35277 48.25579,-130.64723 48.25579,-130.64723 33.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 16 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169225-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vr4j26
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arabidopsis umezawana Kadota"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155927-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsdq8v
title: Occurrence Download

description: A dataset containing 6853 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium sativum L."
 ]
}

 The dataset includes 6853 records from 338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151368-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8m2aw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oecobius cellariorum (Dugès, 1836)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188635-220831081235567/datasets/export for details.
DOI: 10.15468/dl.qxnwem
title: Occurrence Download

description: A dataset containing 7337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Muscicapa striata (Pallas, 1764)",
 "Year 1990-2022"
 ]
}

 The dataset includes 7337 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066479-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt7rez
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physaria inflata (Rollins & E.A.Shaw) O'Kane & Al-Shehbaz"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151372-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvgdkn
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasioglossum vulsum (Vachal, 1903)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 94 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188636-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xr7h6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyprinodon inmemoriam Lozano-Vilano & Contreras-Balderas, 1993"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155935-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cwbcc
title: Occurrence Download

description: A dataset containing 1513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., Plantago aristata, Plantago aristata, Plantago aristata, Plantago aristata, Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michaux, Plantago aristata Michx., Plantago aristata Michx., 193881860, Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., 169998828, Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., 186364777, Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michaux, Plantago aristata Michx., Plantago aristata Michx., Plantago aristata Michx., 204632890, Plantago aristata Michx., 161153075, Plantago aristata Michx., 1803, Plantago squarrosa Nutt., 169998842, Plantago frankii Steud., Plantago filiformis Decne., Plantago nuttallii Rapin, Plantago curta Engelm. ex Decne., Plantago mollis Hook. & Arn., Plantago curta Engelm. ex Decne., Plantago mollis Hook. & Arn., Plantago canescens Schrad. ex Decne., 169998840, Plantago lagopus Pursh, Plantago lagopus Pursh, Plantago candicans Decne., 169998846, Plantago curta Engelm. ex Decne., 169998832, Plantago canescens Schrad. ex Decne., Plantago curta Engelm., Plantago squarrosa Nutt., Plantago canescens Schrad. ex Decne., Plantago nuttallii Rapin, Plantago filiformis Decne., Plantago candicans Decne., Plantago squarrosa Nutt., 169998838, 169998844, Plantago verticillata E.Morris, Plantago mollis Hook. & Arn., 174880558, 169998830, Plantago filiformis Decne., 161153076, 174880557, Plantago nuttallii Rapin)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 1513 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151375-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.netxdc
title: Occurrence Download

description: A dataset containing 313949 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is United States National Plant Germplasm System Collection"
 ]
}

 The dataset includes 313949 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169278-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx2h83
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goldbachia verrucosa Kom."
 ]
}

 The dataset includes 27 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155950-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6p7nc
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium schinzii Thell."
 ]
}

 The dataset includes 76 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151380-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xee8kt
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Neovison vison (Schreber, 1777)"
 ]
}

 The dataset includes 856 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169284-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddfmwg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zahora ait-atta Lemmel & M.Koch"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155966-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvnw9e
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium schlechteri Thell."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151382-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhwp93
title: Occurrence Download

description: A dataset listing the 913 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is one of (British Indian Ocean Territory, Brunei Darussalam, Malaysia, Thailand, Indonesia, India, China, Viet Nam, Cambodia, Myanmar, Singapore, Philippines, Korea (Democratic People’s Republic of), Korea, Republic of, Japan, Chinese Taipei, Mongolia, Nepal, Bhutan, Sri Lanka, Maldives, Pakistan, Afghanistan, Iran (Islamic Republic of), Oman, Saudi Arabia, Iraq, Kuwait, Bahrain, Qatar, United Arab Emirates, Yemen, Jordan, Lebanon, Palestine, State of, Syrian Arab Republic, Lao People’s Democratic Republic)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "OccurrenceStatus is Present",
 "Year 1000-1900"
 ]
}

 The dataset's 913 records were derived from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173065-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mprswg
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goldbachia tetragona Ledeb."
 ]
}

 The dataset includes 31 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155951-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.km9yww
title: Occurrence Download

description: A dataset containing 2059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum viarum Dunal"
 ]
}

 The dataset includes 2059 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194769-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eawpj4
title: Occurrence Download

description: A dataset containing 86890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procyon Storr, 1780"
 ]
}

 The dataset includes 86890 records from 497 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174421-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57724/cndp_jci_20250520_utm_met
title: Meteorological data acquired at SAS Juan Carlos I
title: jcI_met

description: Series of meteorological data
DOI: 10.5281/zenodo.14757239
title: Mouse_lung_superinfection_ST

description: This is the spatial transcriptomics data of lung tissue of mouse models with super-infection. 4 conditions of infection were included. (N_1, N_2: Naive; S_1, S_2: Staph infection on day 6; F_1, F_2: Influenza infection on day 0; FS_1, FS_2: both Influenza infection on day 0 and Staph infection on day 6). Please find the detailed information in github https://github.com/TianhaoLiu829/Superinfection_ST.git and related publications in communications biology. 

File "lung_combine_after_batch.rds" is the combined seurat object of 8 samples. The related information for each spot was saved in metadata slot. This seurat object should be loaded before running the code in github. 

File "ST_lung_superinfection_raw_count.zip" is the zip file with the gene by spot matrix with raw counts and x,y location files for each sample.

File "Images.zip" includes the histology images paired with ST data.

File "Seurat.zip" and "Commot.zip" are two packages used in this study.
DOI: 10.5281/zenodo.17486453
title: Mouse_lung_superinfection_ST

description: This is the spatial transcriptomics data of lung tissue of mouse models with super-infection. 4 conditions of infection were included. (N_1, N_2: Naive; S_1, S_2: Staph infection on day 6; F_1, F_2: Influenza infection on day 0; FS_1, FS_2: both Influenza infection on day 0 and Staph infection on day 6). Please find the detailed information in github https://github.com/TianhaoLiu829/Superinfection_ST.git and related publications in communications biology. 

File "lung_combine_after_batch.rds" is the combined seurat object of 8 samples. The related information for each spot was saved in metadata slot. This seurat object should be loaded before running the code in github. 

File "ST_lung_superinfection_raw_count.zip" is the zip file with the gene by spot matrix with raw counts and x,y location files for each sample.

File "Images.zip" includes the histology images paired with ST data.

File "Seurat.zip" and "Commot.zip" are two packages used in this study.
DOI: 10.15468/dl.t9rufh
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-170.76306 2.13956,-53.38333 2.13956,-53.38333 49.07136,-170.76306 49.07136,-170.76306 2.13956))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tolumnia bahamensis (Nash) Braem"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288207-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb47ae
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Pedioplanis husabensis Berger-Dell'Mour & Mayer, 1989"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026500-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqcofp
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011067-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hu6fg
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección del Phylum Foraminifera del Museo de Zoología de la Universidad de Concepción UCCC_MZUC_FOR"
 ]
}

 The dataset includes 630 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288193-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqmagb
title: Occurrence Download

description: A dataset containing 326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-54.599304199218736 -25.562265014427496,-54.09393310546873 -25.487909825592325,-53.852233886718736 -25.656382025768053,-53.813781738281236 -25.933347157371628,-53.64898681640623 -26.180088724387282,-53.72039794921874 -26.63763888664591,-53.64898681640626 -26.89267909590815,-53.79730224609375 -27.17646913189887,-54.04998779296874 -27.308333052145436,-54.26422119140626 -27.44979032978423,-54.70367431640624 -27.581329075043342,-54.83001708984374 -27.62027328241426,-54.94537353515626 -27.82936085978978,-55.19805908203125 -27.911912615111895,-55.54412841796876 -28.173717624327864,-55.73638916015625 -28.25116690523148,-56.36810302734375 -27.57646007626272,-56.302185058593736 -27.39615541533633,-56.08795166015625 -27.293689224852393,-55.78582763671874 -27.410785702577023,-55.63201904296874 -27.327855149448382,-55.63751220703126 -27.196014383173292,-55.53863525390625 -27.06890909546336,-55.37933349609375 -26.941659545381498,-55.17608642578125 -26.93676245723143,-55.06072998046876 -26.775039386999573,-54.96734619140625 -26.76032583739442,-54.94537353515626 -26.62781822639306,-54.83001708984374 -26.617996722116764,-54.77508544921876 -26.455820238459886,-54.67071533203125 -26.20473426710759,-54.69268798828125 -25.992612489709188,-54.62677001953126 -25.953105584547515,-54.61578369140626 -25.824616618232156,-54.66522216796876 -25.68608778072486,-54.599304199218736 -25.562265014427496))",
 "HasCoordinate is true",
 "TaxonKey is Heliotropiaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 326 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031377-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.coutf1
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Year is 1981"
 ]
}

 The dataset includes 207 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026468-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcveuh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056058-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygvx5g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023175-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.