cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.es9hkp
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Chrysolina cuprina (Duftschmid, 1825)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104534-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j87wkd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agyneta breviceps Hippa & Oksala, 1985",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104535-240626123714530/datasets/export for details.
DOI: 10.15468/dl.vt5sym
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Aepus gracilicornis Wollaston, 1860",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104536-240626123714530/datasets/export for details.
DOI: 10.15468/dl.bnk8jj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agyneta rugosa Wunderlich, 1992",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104538-240626123714530/datasets/export for details.
DOI: 10.15468/dl.k8y3ey
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Chrysolina susterai Bechyne, 1950",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104539-240626123714530/datasets/export for details.
DOI: 10.15468/dl.aw4dxn
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Aepus marinus (Ström, 1783)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 73 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104541-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjbqh5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Launaea thalassica N.Kilian, C.Brockmann & Rustan)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104537-240626123714530/datasets/export for details.
DOI: 10.15468/dl.pn5nj6
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agyneta nigripes (Simon, 1884)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 148 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104543-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu7456
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Chrysolina jenisseiensis (Breit, 1920)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104542-240626123714530/datasets/export for details.
DOI: 10.15468/dl.dvrqs8
title: Occurrence Download

description: A dataset containing 55143 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Year is greater than or equal to 1974",
 "TaxonKey is Eschscholzia californica Cham.",
 {
 "not" : {
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 55143 records from 503 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104540-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p779d7
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liriomyza trifolii (Burgess, 1880)",
 "Year 2002-2022"
 ]
}

 The dataset includes 155 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104547-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13787340
title: Additional file 3 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 3: Table S2. KEGG pathway enrichment of C1.
DOI: 10.6084/m9.figshare.20078687.v1
title: Additional file 1 of Use of a specialty endoscopy online platform for continuing medical education for clinical endoscopists during the COVID-19 pandemic

description: Additional file 1.
DOI: 10.6084/m9.figshare.13787349
title: Additional file 5 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 5: Table S4. KEGG pathway enrichment of C3.
DOI: 10.6084/m9.figshare.13787349.v1
title: Additional file 5 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 5: Table S4. KEGG pathway enrichment of C3.
DOI: 10.6084/m9.figshare.13787352
title: Additional file 6 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 6: Table S5. Protein-protein interaction network.
DOI: 10.6084/m9.figshare.13787352.v1
title: Additional file 6 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 6: Table S5. Protein-protein interaction network.
DOI: 10.6084/m9.figshare.20078687
title: Additional file 1 of Use of a specialty endoscopy online platform for continuing medical education for clinical endoscopists during the COVID-19 pandemic

description: Additional file 1.
DOI: 10.6084/m9.figshare.19029524.v1
title: Additional file 5 of Open chromatin interaction maps reveal functional regulatory elements and chromatin architecture variations during wheat evolution

description: Additional file 5: Table S6 The interchromosomal open chromatin loops.
DOI: 10.6084/m9.figshare.19029527
title: Additional file 6 of Open chromatin interaction maps reveal functional regulatory elements and chromatin architecture variations during wheat evolution

description: Additional file 6: Table S8 The differentially interacted intrachromosomal loops between bread wheat and T. durum.
DOI: 10.17632/4m6g24y8vm.1
title: The development and validation of a scale for measuring EFL teachers’ pedagogical beliefs, pedagogical content knowledge, and instructional material use

description: Exploratory factor analysis, confirmatory factor analysis, and reliability data
DOI: 10.6084/m9.figshare.12737964
title: Additional file 1 of Integrated metabolomics and transcriptome analysis on flavonoid biosynthesis in safflower (Carthamus tinctorius L.) under MeJA treatment

description: Additional file 1: Table S1. List of the 209 metabolites detected in safflower samples and OPLS-DA results. Two hundred nine flavonoid metabolites details were listed in the table. CK represent treatment without MeJA, M-MeJA represent treatment with MeJA. Three biological repeats were made in the experiment. Table S2. Extract of the 35 metabolites significantly different between MeJA and non-treated materials. CK represents treatment without MeJA. Three biological replicates were used in the experiment. Table S3. Details of the transcripts belonging to the flavonoid biosynthesis which were significantly different after MeJa treatment. M-CK represent treatment without MeJA, M-MeJA represent treatment with MeJA. Table S4. List of primers used for RT-PCR and promoter cloning experiments.
DOI: 10.5281/zenodo.10396782
title: Path Mixing VLN dataset

description: The Room -to-Room (R2R) dataset consists of human annotated instructions corresponding to the paths in these graphs. Each path consists of a sequence of viewpoints encountered by the agent during navigation. A derived dataset, Fine-Grained R2R (FGR2R) dataset, annotated parts of instructions with corresponding graph edges to obtain a fine-grained dataset. Existing works in VLN have shown that more instruction examples can improve an agent’s performance in previously unseen environments. We generate 162k instruction-trajectory pairs with path lengths between 5m and 20m. The final dataset has on average 7.27 views per path, a mean of 14.4m trajectory length and an average of 82 words per instruction.
DOI: 10.5281/zenodo.8422185
title: Path Mixing VLN dataset

description: The Room -to-Room (R2R) dataset consists of human annotated instructions corresponding to the paths in these graphs. Each path consists of a sequence of viewpoints encountered by the agent during navigation. A derived dataset, Fine-Grained R2R (FGR2R) dataset, annotated parts of instructions with corresponding graph edges to obtain a fine-grained dataset. Existing works in VLN have shown that more instruction examples can improve an agent’s performance in previously unseen environments. We generate 162k instruction-trajectory pairs with path lengths between 5m and 20m. The final dataset has on average 7.27 views per path, a mean of 14.4m trajectory length and an average of 82 words per instruction.
DOI: 10.6084/m9.figshare.20078884.v1
title: miR-140-3p suppresses the proliferation and migration of macrophages

description: Abstract Macrophages benefit myelin debris removal, blood vessel formation, and Schwann cell activation following peripheral nerve injury. Identifying factors that modulate macrophage phenotype may advantage the repair and regeneration of injured peripheral nerves. microRNAs (miRNAs) are important regulators of many physiological and pathological processes, including peripheral nerve regeneration. Herein, we investigated the regulatory roles of miR-140-3p, a miRNA that was differentially expressed in injured rat sciatic nerves, in macrophage RAW264.7 cells. Observations from EdU proliferation assay demonstrated that elevated miR-140-3p decreased the proliferation rates of RAW264.7 cells while suppressed miR-140-3p increased the proliferation rates of RAW264.7 cells. Transwell-based migration assay showed that up-regulated and down-regulated miR-140-3p led to elevated and reduced migration abilities, respectively. However, the abundances of numerous phenotypic markers of M1 and M2 macrophages were not significantly altered by miR-140-3p mimic or inhibitor transfection. Bioinformatic analysis and miR-140-3p-induced gene suppression examination suggested that Smad3 might be the target gene of miR-140-3p. These findings illuminate the inhibitory effects of miR-140-3p on the proliferation and migration of macrophages and contribute to the cognition of the essential roles of miRNAs during peripheral nerve regeneration.
DOI: 10.6084/m9.figshare.13787334.v1
title: Additional file 1 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 1: Table S1. GO functional enrichment of 366 DEPs.
DOI: 10.6084/m9.figshare.19028933.v1
title: Additional file 2 of Genome-wide annotation of protein-coding genes in pig

description: Additional file 2. List of sequencing quality control metrics, overview of samples used for analysis, and a description of the mapping of tissue types to organ systems and grouped tissues.
DOI: 10.6084/m9.figshare.19028942.v1
title: Additional file 5 of Genome-wide annotation of protein-coding genes in pig

description: Additional file 5. Supplementary information for annotation of each UMAP cluster, including elevated tissues generated from the hypergeometric test (FDR &lt; 0.001 in sheet 3; Cluster tissue hypergeom), and list of gene set enrichment analysis (GSEA) analysis towards GO-terms.
DOI: 10.6084/m9.figshare.13787343
title: Additional file 4 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 4: Table S3. KEGG pathway enrichment of C2.
DOI: 10.6084/m9.figshare.13787343.v1
title: Additional file 4 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 4: Table S3. KEGG pathway enrichment of C2.
DOI: 10.6084/m9.figshare.13787355
title: Additional file 7 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 7: Table S6. Primer sequence.
DOI: 10.5281/zenodo.10625594
title: MOTS-annotated UAV Vineyard Dataset captured using Multiple Perspectives to avoid Leaf Occlusion for Object Detection and Tracking

description: This dataset contains UAV RGB videos (MP4) recorded with a Phantom4 RTK in a vineyard during the harvesting campaign of 2023. It also includes frames and annotations (PNG) to boost Object Detection and Tracking of grape bunches. There are two types of videos: (1) videos capturing the side of the canopy from a frontal point of view only, and (2) videos that collect the data from multiple perspectives to avoid leaf occlusion, common in commercial vineyards. All flights were executed 3 meters above ground level, with a clear sky and wind speed below 0.5 m/s.
DOI: 10.5281/zenodo.10625595
title: MOTS-annotated UAV Vineyard Dataset captured using Multiple Perspectives to avoid Leaf Occlusion for Object Detection and Tracking

description: This dataset contains UAV RGB videos (MP4) recorded with a Phantom4 RTK in a vineyard during the harvesting campaign of 2023. It also includes frames and annotations (PNG) to boost Object Detection and Tracking of grape bunches. There are two types of videos: (1) videos capturing the side of the canopy from a frontal point of view only, and (2) videos that collect the data from multiple perspectives to avoid leaf occlusion, common in commercial vineyards. All flights were executed 3 meters above ground level, with a clear sky and wind speed below 0.5 m/s.
DOI: 10.6084/m9.figshare.13787340.v1
title: Additional file 3 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 3: Table S2. KEGG pathway enrichment of C1.
DOI: 10.6084/m9.figshare.13787355.v1
title: Additional file 7 of TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

description: Additional file 7: Table S6. Primer sequence.
DOI: 10.6084/m9.figshare.17981926
title: Additional file 1 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 1: Table S1. The list of all segregating SNPs in the core genome of S. pyogenes. Table S2. The list of 46 strains of S. pyogenes used for variant detection. Table S3. SNP clusters identified by SweepCluster from all segregating SNPs of S. pyogenes. Table S4. The list of SNPs from S. pyogenes associated with the disease phenotype acute rheumatic fever (p-value ≤ 0.05). Table S5. SNP clusters identified by SweepCluster from the SNPs associated with the disease phenotype acute rheumatic fever for S. pyogenes.
DOI: 10.6084/m9.figshare.17981935
title: Additional file 3 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 3: Table S11. The list of 20 strains of V. cycliotrophicus used for variant detection. Table S12. The ecoSNPs from V. cyclitrophicus associated with the ecological differentiation. Table S13. The list of SNP clusters identified by SweepCluster for ecoSNPs in V. cyclitrophicus.
DOI: 10.6084/m9.figshare.17981947
title: Additional file 7 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 7: Clusters detected by SweepCluster for chromosome 10 variants between AFR-EAS selected at a series of Fst cutoff (0.4, 0.43, 0.45, 0.5, 0.55, 0.6, 0.65, and 0.7).
DOI: 10.6084/m9.figshare.20078715
title: Additional file 9 of MMP2 and MMP9 contribute to lung ischemia–reperfusion injury via promoting pyroptosis in mice

description: Additional file 9: The sample Cq value in RT-qPCR. (Figure 2A)
DOI: 10.6084/m9.figshare.20078884
title: miR-140-3p suppresses the proliferation and migration of macrophages

description: Abstract Macrophages benefit myelin debris removal, blood vessel formation, and Schwann cell activation following peripheral nerve injury. Identifying factors that modulate macrophage phenotype may advantage the repair and regeneration of injured peripheral nerves. microRNAs (miRNAs) are important regulators of many physiological and pathological processes, including peripheral nerve regeneration. Herein, we investigated the regulatory roles of miR-140-3p, a miRNA that was differentially expressed in injured rat sciatic nerves, in macrophage RAW264.7 cells. Observations from EdU proliferation assay demonstrated that elevated miR-140-3p decreased the proliferation rates of RAW264.7 cells while suppressed miR-140-3p increased the proliferation rates of RAW264.7 cells. Transwell-based migration assay showed that up-regulated and down-regulated miR-140-3p led to elevated and reduced migration abilities, respectively. However, the abundances of numerous phenotypic markers of M1 and M2 macrophages were not significantly altered by miR-140-3p mimic or inhibitor transfection. Bioinformatic analysis and miR-140-3p-induced gene suppression examination suggested that Smad3 might be the target gene of miR-140-3p. These findings illuminate the inhibitory effects of miR-140-3p on the proliferation and migration of macrophages and contribute to the cognition of the essential roles of miRNAs during peripheral nerve regeneration.
DOI: 10.6084/m9.figshare.17981932
title: Additional file 2 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 2: Table S6. The list of all segregating SNPs in the core genome of S. suis. Table S7. The list of 209 strains of S. suis used for variant detection. Table S8. SNP clusters identified by SweepCluster from all segregating SNPs of S. suis. Table S9. The list of SNPs from S. suis associated with the subpopulation differentiation (p-value ≤ 0.05). Table S10. SNP clusters identified by SweepCluster from the SNPs associated with population differentiation for S. suis.
DOI: 10.6084/m9.figshare.17981938.v1
title: Additional file 4 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 4: Clusters detected by SweepCluster for chromosome 2 variants between EUR-AFR selected at a series of Fst cutoff (0.4, 0.43, 0.45, 0.5, 0.55, 0.6, 0.65, and 0.7).
DOI: 10.6084/m9.figshare.17981935.v1
title: Additional file 3 of SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes

description: Additional file 3: Table S11. The list of 20 strains of V. cycliotrophicus used for variant detection. Table S12. The ecoSNPs from V. cyclitrophicus associated with the ecological differentiation. Table S13. The list of SNP clusters identified by SweepCluster for ecoSNPs in V. cyclitrophicus.
DOI: 10.6084/m9.figshare.12737964.v1
title: Additional file 1 of Integrated metabolomics and transcriptome analysis on flavonoid biosynthesis in safflower (Carthamus tinctorius L.) under MeJA treatment

description: Additional file 1: Table S1. List of the 209 metabolites detected in safflower samples and OPLS-DA results. Two hundred nine flavonoid metabolites details were listed in the table. CK represent treatment without MeJA, M-MeJA represent treatment with MeJA. Three biological repeats were made in the experiment. Table S2. Extract of the 35 metabolites significantly different between MeJA and non-treated materials. CK represents treatment without MeJA. Three biological replicates were used in the experiment. Table S3. Details of the transcripts belonging to the flavonoid biosynthesis which were significantly different after MeJa treatment. M-CK represent treatment without MeJA, M-MeJA represent treatment with MeJA. Table S4. List of primers used for RT-PCR and promoter cloning experiments.