cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.956183
title: Molecular responses of calcifying and non-calcifying Antarctic benthic species to Ocean Acidification - Apoptotic activity

description: Southern Ocean organisms are thought to be particularly vulnerable to ocean acidification, as they inhabit cold waters where calcite-aragonite saturation states are naturally low. It is also generally assumed that calcifying animals would be more affected by ocean acidification than non-calcifying ones. In this context, we aimed to study the impacts of reduced pH on the ascidia Cnemidocarpa verrucosa sp. A. Here, we used gene expression profiling and enzymatic activity to study the responses of that Antarctic benthic species to ocean acidification. We sampled Cnemidocarpa verrucosa sp. A. by scuba diving at approximately 15 m depth at Carlini station, Potter Cove, King George Island, Antarctica. Superoxide dismutase (SOD) activity was measured in the ascidia, samples (approximately 70 mg of brachial basket) were homogenized in 20 mM Tris-HCl, 1 mM EDTA, pH 7.6, with a ratio 1:4 w/v. Homogenates were centrifuged at 14,000 x g for 3 min at 4°C and the supernatant was used to measure SOD activity at 20°C following Livingstone et al. (1992) protocol. Supernatant was mixed with the measurement buffer (43 mM K₂HPO₄, 43 mM KH₂PO₄, 0.1 mM EDTA, pH 7.68), 5 mM Xanthina (Sigma X-0626), 100 µM Citocromo-C (Sigma C-2037), 0.3 mU/µl XOD (Xanthin-Oxidasa, Sigma X-4875) in 2 M (NH₄)2SO₄. The measurement was made in a photometer at 20°C, 550 nm wavelength, for 3 minutes, every 10 seconds. For the calculations, the total protein content of the samples was measured using the method of Bradford (1976). Superoxide dismutase activity was expressed in activity in the extract (mU) / amount of protein (mg). All measurements were made in triplicate.
DOI: 10.1594/pangaea.863598
title: Physical oceanography during Ary Rongel cruise GOAL2003

description: For definition of quality flags see hdl:10013/epic.31518.d001
DOI: 10.15468/dl.xsyccw
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is one of (NMNH Extant Specimen Records (USNM, US), Tropicos MO Specimen Data, India Biodiversity Portal publication grade dataset, Royal Botanic Gardens, Kew - Economic Botany Collection Specimens, Naturalis Biodiversity Center (NL) - Botany, Herbarium of the French Institute of Pondicherry, Royal Botanic Gardens, Kew - Herbarium Specimens, BARO Herbarium, The M.S University of Baroda, SeasonWatch - Tree Phenology Dataset (India), iNaturalist Research-grade Observations)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mitragyna parvifolia (Roxb.) Korth."
 ]
}

 The dataset includes 358 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006856-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ge5qyu
title: Occurrence Download

description: A dataset containing 5280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pieridae",
 "Year 2015-2025"
 ]
}

 The dataset includes 5280 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011535-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muz9mc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((-79.42400000000001 -0.743817, -79.494269 -0.749383, -79.562808 -0.765945, -79.627931 -0.793095, -79.688034 -0.830165, -79.74163799999999 -0.876241, -79.78742200000001 -0.930191, -79.82426100000001 -0.990685, -79.851246 -1.056236, -79.86771299999999 -1.125228, -79.873255 -1.195963, -79.867735 -1.2667, -79.85128899999999 -1.335697, -79.82432 -1.401255, -79.787492 -1.46176, -79.741711 -1.515721, -79.688104 -1.561809, -79.62799099999999 -1.598889, -79.56285200000001 -1.626047, -79.494292 -1.642614, -79.42400000000001 -1.648182, -79.353708 -1.642614, -79.28514800000001 -1.626047, -79.220009 -1.598889, -79.159896 -1.561809, -79.106289 -1.515721, -79.060508 -1.46176, -79.02368 -1.401255, -78.996711 -1.335697, -78.980265 -1.2667, -78.974745 -1.195963, -78.980287 -1.125228, -78.996754 -1.056236, -79.02373900000001 -0.990685, -79.06057800000001 -0.930191, -79.106362 -0.876241, -79.159966 -0.830165, -79.220069 -0.793095, -79.285192 -0.765945, -79.353731 -0.749383, -79.42400000000001 -0.743817))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020567-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18300594
title: Data accompanying the paper "Assessing the drought alleviation potential of past stand density management for European beech and pedunculate oak forests: a tree-ring analysis"

description: Data accompanying the paper "Assessing the drought alleviation potential of past stand density management for European beech and pedunculate oak forests: a tree-ring analysis" by Sanne Verdonck, Koenraad Van Meerbeek, Arno Thomaes, and Bart Muys.
DOI: 10.5281/zenodo.18300593
title: Data accompanying the paper "Assessing the drought alleviation potential of past stand density management for European beech and pedunculate oak forests: a tree-ring analysis"

description: Data accompanying the paper "Assessing the drought alleviation potential of past stand density management for European beech and pedunculate oak forests: a tree-ring analysis" by Sanne Verdonck, Koenraad Van Meerbeek, Arno Thomaes, and Bart Muys.
DOI: 10.15468/dl.qyhawx
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((98.90600000000001 8.53809, 98.83495600000001 8.532518, 98.76566699999999 8.515938999999999, 98.699845 8.488763000000001, 98.63911400000001 8.451661, 98.58497300000001 8.405549000000001, 98.53875600000001 8.351566, 98.5016 8.291043999999999, 98.47441499999999 8.225474999999999, 98.457869 8.156477000000001, 98.45236199999999 8.085748000000001, 98.45802500000001 8.015032, 98.474712 7.946068, 98.502008 7.880554, 98.539237 7.820101, 98.58547900000001 7.766194, 98.639595 7.720159, 98.700253 7.683126, 98.765964 7.656004, 98.835112 7.63946, 98.90600000000001 7.6339, 98.976888 7.63946, 99.046036 7.656004, 99.11174699999999 7.683126, 99.172405 7.720159, 99.22652100000001 7.766194, 99.272763 7.820101, 99.30999199999999 7.880554, 99.337288 7.946068, 99.35397500000001 8.015032, 99.359638 8.085748000000001, 99.354131 8.156477000000001, 99.337585 8.225474999999999, 99.3104 8.291043999999999, 99.27324400000001 8.351566, 99.22702700000001 8.405549000000001, 99.17288600000001 8.451661, 99.112155 8.488763000000001, 99.046333 8.515938999999999, 98.97704400000001 8.532518, 98.90600000000001 8.53809))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 240 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020569-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sdjdk
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bradleycypris obliqua"
 ]
}

 The dataset includes 123 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020570-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/24411841.v1
title: Chronic recordings from Neuropixels 2.0 probes in mice

description: This repository contains the raw data from chronic recordings in the visual cortex of three mice. The data were analyzed and published in Steinmetz, Aydin, Lebedeva, Okun, Pachitariu et al. "Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings", <i>Science </i>2021 (doi.org/10.1126/science.abf4588).The data pertain to Figure 4 of that paper, where neurons are characterized by their responses to a battery of 112 natural images. The fact that neurons retain the same preferences for natural images over tens of days strongly suggests that the neurons themselves are the same across days.The folder "<b>Images</b>" contains the 112 images that were presented to the mice.The data are from 3 mice:AL031 (“Mouse 3”), recorded with a 1-shank Neuropixels 2.0 probeAL032 (“Mouse 1”), recorded with a 4-shank Neuropixels 2.0 probeAL036 (“Mouse 2”), recorded with a 4-shank Neuropixels 2.0 probeAs detailed in the paper, mice were implanted in the left primary visual cortex, and the probe was cemented to the skull. During recording sessions, mice were head-fixed in front of 3 screens (left, center, right). Each stimulus was presented for 1 s, on the right and central screen, while the left screen was gray. In the interval between stimulus presentations (at least 2 s, as indicated in the files) all screens were gray. Recordings were made in SpikeGLX (https://billkarsh.github.io/SpikeGLX/) so once uncompressed, the data will be in .bin format.Each recording is contained in a folder named after the animal and the date of the recording. Each folder contains:A .<b>cbin</b> file and its accompanying .<b>ch</b> file. This is the compressed raw data. To decompress it, use the following package: https://github.com/int-brain-lab/mtscompA <b>meta </b>file, containing information about the recording settings.A file called <b>stimIDs</b>, containing the reference numbers of images that were presented (560 total; 5 presentations, 112 images each). Each stimID corresponds to an image in the "Images" folder.A file called <b>stimTimes</b>, containing the onset times of each stimulus (also 560 total).A folder called <b>ks</b>, containing the output of a spike sorting algorithm (pyKilosort; https://github.com/int-brain-lab/pykilosort) for that recording. This output can be inspected and curated using phy (https://github.com/cortex-lab/phy). To do so you will need to define a correct path to the data file in the params.py file in the ks folder.Example code to load the dataTo explore the data, we provide the Matlab function<b> call_readRawDataChunk</b>. Using this function, you can read and explore compressed data. To use the function, you will need the code in the repository: https://github.com/fangq/zmat (also available as Matlab Add-On https://uk.mathworks.com/matlabcentral/fileexchange/71434-zmat). Specify the file path, the starting point, and the duration of the chunk you want to explore at the top of the file, and happy exploration!
DOI: 10.15468/dl.msznag
title: Occurrence Download

description: A dataset containing 1432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cirsium heterophyllum, Cirsium helenioides, Cirsium helenioides, Cirsium helenioides)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1432 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020571-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckbysb
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.7_1",
 "TaxonKey is Andricus kollari"
 ]
}

 The dataset includes 75 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020572-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsz78x
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((-79.42400000000001 -0.743817, -79.494269 -0.749383, -79.562808 -0.765945, -79.627931 -0.793095, -79.688034 -0.830165, -79.74163799999999 -0.876241, -79.78742200000001 -0.930191, -79.82426100000001 -0.990685, -79.851246 -1.056236, -79.86771299999999 -1.125228, -79.873255 -1.195963, -79.867735 -1.2667, -79.85128899999999 -1.335697, -79.82432 -1.401255, -79.787492 -1.46176, -79.741711 -1.515721, -79.688104 -1.561809, -79.62799099999999 -1.598889, -79.56285200000001 -1.626047, -79.494292 -1.642614, -79.42400000000001 -1.648182, -79.353708 -1.642614, -79.28514800000001 -1.626047, -79.220009 -1.598889, -79.159896 -1.561809, -79.106289 -1.515721, -79.060508 -1.46176, -79.02368 -1.401255, -78.996711 -1.335697, -78.980265 -1.2667, -78.974745 -1.195963, -78.980287 -1.125228, -78.996754 -1.056236, -79.02373900000001 -0.990685, -79.06057800000001 -0.930191, -79.106362 -0.876241, -79.159966 -0.830165, -79.220069 -0.793095, -79.285192 -0.765945, -79.353731 -0.749383, -79.42400000000001 -0.743817))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020576-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yjtzp
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((99.29300000000001 8.563089, 99.221951 8.557517000000001, 99.152658 8.540938000000001, 99.086831 8.513762, 99.02609699999999 8.476660000000001, 98.971953 8.430548, 98.92573299999999 8.376564999999999, 98.88857400000001 8.316043000000001, 98.86138800000001 8.250475, 98.844841 8.181476, 98.83933399999999 8.110747, 98.844998 8.040031000000001, 98.86168600000001 7.971068, 98.88898399999999 7.905554, 98.926215 7.845101, 98.97246 7.791194, 99.026579 7.745159, 99.08724100000001 7.708126, 99.152956 7.681005, 99.22210800000001 7.664461, 99.29300000000001 7.658901, 99.36389200000001 7.664461, 99.433044 7.681005, 99.49875900000001 7.708126, 99.559421 7.745159, 99.61354 7.791194, 99.659785 7.845101, 99.697016 7.905554, 99.72431400000001 7.971068, 99.74100199999999 8.040031000000001, 99.746666 8.110747, 99.741159 8.181476, 99.72461199999999 8.250475, 99.69742599999999 8.316043000000001, 99.660267 8.376564999999999, 99.614047 8.430548, 99.55990300000001 8.476660000000001, 99.49916899999999 8.513762, 99.433342 8.540938000000001, 99.36404899999999 8.557517000000001, 99.29300000000001 8.563089))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 105 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020578-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6z978
title: Occurrence Download

description: A dataset containing 8754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemiclepsis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8754 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020577-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/1643
title: Dataset associated with the publication 'Ferri- and Ferro-electric Switching in Spontaneously Chiral Polar Liquid Crystals'

description: Complete experimental data associated with the paper "Ferri- and ferro-electric switching in spontaneously chiral polar liquid crystals".
DOI: 10.5281/zenodo.18300423
title: Managing AI Driven Customs Modernisation

description: This repository contains anonymised survey data and analysis code supporting the manuscript “Bridging the Bureaucracy–Agility Divide: A Hybrid Framework for AI-Driven Customs Modernisation in Bangladesh.”

The materials are used to analyse AI-enabled decision support, governance, and organisational agility in public-sector customs administration. All data are fully anonymised, and no personal identifiers are included. The repository is provided to support transparency and reproducibility in applied artificial intelligence and public administration research.
DOI: 10.5281/zenodo.18300424
title: Managing AI Driven Customs Modernisation

description: This repository contains anonymised survey data and analysis code supporting the manuscript “Bridging the Bureaucracy–Agility Divide: A Hybrid Framework for AI-Driven Customs Modernisation in Bangladesh.”

The materials are used to analyse AI-enabled decision support, governance, and organisational agility in public-sector customs administration. All data are fully anonymised, and no personal identifiers are included. The repository is provided to support transparency and reproducibility in applied artificial intelligence and public administration research.
DOI: 10.15468/dl.2gj9pg
title: Occurrence Download

description: A dataset containing 53481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleusine indica"
 ]
}

 The dataset includes 53481 records from 1114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020487-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18300769
title: Langelsheim, Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]  Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.18300768
title: Langelsheim, Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]  Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.yxrnk8
title: Occurrence Download

description: A dataset containing 5052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cirsium palustre, Cirsium palustre, Cirsium palustre)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 5052 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020579-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31083160
title: Expression of ZIKV envelope protein in mouse embryonic stem cells

description: Differentially expressed genes in mouse embryonic stem cells expressing ZIKV envelope protein in an undifferentiated state
DOI: 10.6084/m9.figshare.31083160.v1
title: Expression of ZIKV envelope protein in mouse embryonic stem cells

description: Differentially expressed genes in mouse embryonic stem cells expressing ZIKV envelope protein in an undifferentiated state
DOI: 10.5281/zenodo.18300536
title: Code and data for: Social cues from neighbouring patches influence patch dynamics in a spatially structured population of a colonial bird

description: This folder contains all the novel code and processed data to reproduce the results of the manuscript Social cues from neighbouring patches influence patch dynamics in a spatially structured population of a colonial bird:



data: processed data to describe the dynamics of the study system (".csv" files) and to run the patch occupancy and growth models (".rda" files). The text files named "metadata" describe the structure of the corresponding data files.

R: codes to get some statistical description of the dynamics of the study system, run the patch occupancy and growth models, and plot the figures.

output: outputs of the patch occupancy and growth models used in the manuscript.

figures: figures generated by the R codes and reported in the manuscript.