cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2dd5vv
title: CCDC 2216247: Experimental Crystal Structure Determination

description: Related Article: Wei Qu|2023|CSD Communication|||
description: Related Article: Wei Qu, Weijun Li, Xiaopeng Feng, Yuhong He, Wanting Pan, KeKe Guo, Mingbian Li, Mingrui Tan, Bai Yang, Haotong Wei|2023|Adv.Funct.Mater.|33|2213955|doi:10.1002/adfm.202213955
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g42yn
title: CCDC 2268051: Experimental Crystal Structure Determination

description: Related Article: Niklas F. Both, Anke Spannenberg, Haijun Jiao, Kathrin Junge, Matthias Beller|2023|Angew.Chem.,Int.Ed.|62|e202307987|doi:10.1002/anie.202307987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g42zp
title: CCDC 2268052: Experimental Crystal Structure Determination

description: Related Article: Niklas F. Both, Anke Spannenberg, Haijun Jiao, Kathrin Junge, Matthias Beller|2023|Angew.Chem.,Int.Ed.|62|e202307987|doi:10.1002/anie.202307987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7946511
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/7946521
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.5281/zenodo.8319436
title: Direct visualisation of  Alpha-Synuclein Oligomers in Human Brain

description: Code for direct visualisation of α-synuclein oligomers in human brain tissue
DOI: 10.5281/zenodo.10371650
title: Data complementing the Avian influenza overview September–December 2023

description: Data complementing the Avian influenza overview September–December 2023
 
Annex A – Data on wild bird species and HPAI virus detections in birds
The annex contains tables and figures on wild bird species and HPAI virus detections in birds.
 
Annex B – Characteristics of the HPAI A(H5Nx)-affected poultry establishments
The annex contains a table with the characteristics of the HPAI A(H5Nx)-affected poultry establishments by affected European country submitted to ADIS between 1 September and 2 December 2023.
 
Annex C – Data on virus sequences
The annex contains information on authors, originating and submitting laboratories of the sequences from GISAID's EpiFlu™ Database on which this research is based. All data submitters may be contacted directly via www.gisaid.org.
DOI: 10.5281/zenodo.10371651
title: Data complementing the Avian influenza overview September–December 2023

description: Data complementing the Avian influenza overview September–December 2023
 
Annex A – Data on wild bird species and HPAI virus detections in birds
The annex contains tables and figures on wild bird species and HPAI virus detections in birds.
 
Annex B – Characteristics of the HPAI A(H5Nx)-affected poultry establishments
The annex contains a table with the characteristics of the HPAI A(H5Nx)-affected poultry establishments by affected European country submitted to ADIS between 1 September and 2 December 2023.
 
Annex C – Data on virus sequences
The annex contains information on authors, originating and submitting laboratories of the sequences from GISAID's EpiFlu™ Database on which this research is based. All data submitters may be contacted directly via www.gisaid.org.
DOI: 10.17632/zmdvhwggg8.1
title: Stem-loop induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress induced human ATF4 translational control

description: First original Western Blot image named 2023-10-30-084453-image1-sub5-As-Captured is the image used for the Supplementary Figure S1B comparison of ATF4 HA tag and ATF4 endogenous (lines 2,3,4 were excluded and were not used in the final version for the article). 

Second original Western Blot image named 2024-01-05-092835-image1-sub8-As-Captured is the image used for the Supplementary Figure S1C about comparison of EV (empty vector), ATF4-HA tag wt plasmid and turbofect (from this image the membrane-of-our-interest is the upper one, and only the first 4 lines are target ones and they were used for the article).
DOI: 10.5281/zenodo.10876352
title: Supplementary material of article "Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control"
DOI: 10.5281/zenodo.10876353
title: Supplementary material of article "Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control"
DOI: 10.6084/m9.figshare.24195588
title: Whole genomes show contrasting trends of population size changes and genomic diversity for an Amazonian endemic Passerine over the Late Quaternary

description: <b>Metadata:</b> "Willisornis_Sequenciados_BancodeDados.csv"<b>VCF file with outgroup for phylogenetic analyses:</b> "WILLISORNIS_trees.vcf"<b>VCF file without outgroup for population genomics analyses:</b> "WILLISORNIS_popgen.vcf"<b>Codes for genomic analyses: </b>"00.Initial_Edits_GenoFile.docx"<b>R Codes:</b> R files from 01-03.
DOI: 10.15129/04700d85-f2b2-40f7-a3a2-58261aabf572
title: Data for: "A Novel 3D Imaging Approach for Quantification of GLUT4 Levels across the Intact Myocardium"

description: This dataset contains stacks of raw Mesolen-aquired images (16-bit, TIFF) obtained for the 13 intact heart sections analysied in this work. All downloadable datasets are compressed into .zip files (total un-zipped size = 103 GB).
DOI: 10.25500/edata.bham.00000730
title: Research data supporting ” Interpretation of Wide Range Particulate Matter Size Distributions in Delhi”
DOI: 10.6084/m9.figshare.25452343.v1
title: 2_perception_EEGdata

description: This dataset contains all the subjects' EEG data, including raw EEG and preprocessed EEG dataset, in experiment 2.
DOI: 10.6084/m9.figshare.25480135
title: Harmony of Opposites: Classical Source Texts and Translations

description: A collection of quotes about the harmony of opposites were assembled and chosen from Classical Greek and Chinese Philosophers. These quotes are presented in their original language with transliteration and translation provided in a line-by-line format. For Heraclitus and the Pythagoreans, the Loeb Classical Library was used to review early and late sources in the original Greek. Aristotle’s book 1 of the Metaphysics is the main primary source text for many of the Pythagorean quotes. The Loeb Library provides material in the original Greek as well as an English translation. The original Chinese source material was gathered from the Chinese Text Project. Each chosen quote is shared in tabular form, with the original language (Greek or Chinese) along with new transliterations and translations. The transliterations each come from OpenAI’s GPT4, with various edits. The translations are based on a consideration of multiple existing translations, including those from GPT4. Each line is rendered with alignment, so that comparisons with the original language can be readily made by those who wish to do so. Efforts were made to retain the word order and to use appropriate cognates in order to facilitate connection with the original. The goal of this sourcing and translation is to make these early texts more accessible to non-specialists. The other primary goal of this method is to highlight important meanings that are not always clear in existing translations.<br>
DOI: 10.5281/zenodo.10876933
title: 4XMM-DR13s

description: The 4XMM-DR13s catalogue of serendipitous sources from overlapping XMM-Newton observations has been compiled from 1 688 groups of 9 796 overlapping XMM-Newton observations. They were taken between 2000 February 1 and 2022 November 29 and overlap by at least one arcminute in radius. The catalogue contains 401 596 unique sources, 310 478 of them multiply observed, with positions and source parameters like fluxes in the XMM-Newton standard energy bands, hardness ratios, quality estimate, and information on inter-observation variability. The parameters are directly derived from the simultaneous fit, and, wherever applicable, additionally calculated for each contributing observation. For lower-quality exposures, not used in source detection to ensure the detection quality, the source parameters are derived from subsequent PSF photometry. The number of parameter measurements (total number of observations of all unique sources) has thus increased to almost 1.7 million. Total fluxes and rates are calculated from the measurements in all contributing images as error-weighted means (formerly: exposure-weighted).The catalogue aims at exploring the multiply observed sky regions and exploit their survey potential, in particular to study the long-term behaviour of X-ray emitting sources. It thus makes use of the long(er) effective exposure time per sky area and offers the opportunity to investigate flux variability directly through the source detection process
DOI: 10.5281/zenodo.10876934
title: 4XMM-DR13s

description: The 4XMM-DR13s catalogue of serendipitous sources from overlapping XMM-Newton observations has been compiled from 1 688 groups of 9 796 overlapping XMM-Newton observations. They were taken between 2000 February 1 and 2022 November 29 and overlap by at least one arcminute in radius. The catalogue contains 401 596 unique sources, 310 478 of them multiply observed, with positions and source parameters like fluxes in the XMM-Newton standard energy bands, hardness ratios, quality estimate, and information on inter-observation variability. The parameters are directly derived from the simultaneous fit, and, wherever applicable, additionally calculated for each contributing observation. For lower-quality exposures, not used in source detection to ensure the detection quality, the source parameters are derived from subsequent PSF photometry. The number of parameter measurements (total number of observations of all unique sources) has thus increased to almost 1.7 million. Total fluxes and rates are calculated from the measurements in all contributing images as error-weighted means (formerly: exposure-weighted).The catalogue aims at exploring the multiply observed sky regions and exploit their survey potential, in particular to study the long-term behaviour of X-ray emitting sources. It thus makes use of the long(er) effective exposure time per sky area and offers the opportunity to investigate flux variability directly through the source detection process
DOI: 10.5284/1118294
title: Extensive Urban Survey - Lincolnshire

description: The Lincolnshire Extensive Urban Survey project has been undertaken, between 2018 and 2022, as part of the national programme of Extensive Urban Surveys (EUS) promoted and funded by Historic England. The survey has covered a total of 30 towns. The main aim of the project was to synthesise and increase understanding of the historical development and the legibility of historic character for each of the survey towns in the historic county of Lincolnshire.
DOI: 10.6084/m9.figshare.25480192.v1
title: Supplementary Material for: Informal care time and costs of dementia care in Benin (West Africa)

description: Background: Dementia is a growing global health challenge, with significant socioeconomic implications. This study examined the informal care duration and related costs along with the total cost of care for older individuals with dementia in Benin, West Africa, providing insights into a region with limited dementia research.
Methods: We conducted a cost-of-illness study in Benin. Both hospital and community recruitments were used to enroll adults aged ≥ 60 years and their primary caregivers. Structured questionnaire and validated tools were used to collect the demographic, clinical, healthcare resource utilization data as well as informal care duration. Replacement costs approach was performed to valuate informal care time. Official exchange rates from the World Bank were used to convert costs from local currency to purchasing power parities dollars (PPP$).
Results: Data from 135 individuals with varying dementia stages revealed that dementia places substantial caregiving demands, predominantly on women who provide up to eight hours of daily care. In 2021, the mean annual cost of dementia care was estimated to be PPP$2,399.66 ± 2,057.07. Informal care represented a significant portion of dementia expenses, up to 92% of the total care costs in this study.
Discussion: Policy interventions are urgently needed to address the dementia-care challenges in Benin, especially because economic transitions and educational advancements may reduce the availability of informal caregivers. This emphasizes the vital role of informal caregivers and underscores the need of implementing dementia policies to support families facing the evolving challenges of dementia care.
DOI: 10.6084/m9.figshare.25480192
title: Supplementary Material for: Informal care time and costs of dementia care in Benin (West Africa)

description: Background: Dementia is a growing global health challenge, with significant socioeconomic implications. This study examined the informal care duration and related costs along with the total cost of care for older individuals with dementia in Benin, West Africa, providing insights into a region with limited dementia research.
Methods: We conducted a cost-of-illness study in Benin. Both hospital and community recruitments were used to enroll adults aged ≥ 60 years and their primary caregivers. Structured questionnaire and validated tools were used to collect the demographic, clinical, healthcare resource utilization data as well as informal care duration. Replacement costs approach was performed to valuate informal care time. Official exchange rates from the World Bank were used to convert costs from local currency to purchasing power parities dollars (PPP$).
Results: Data from 135 individuals with varying dementia stages revealed that dementia places substantial caregiving demands, predominantly on women who provide up to eight hours of daily care. In 2021, the mean annual cost of dementia care was estimated to be PPP$2,399.66 ± 2,057.07. Informal care represented a significant portion of dementia expenses, up to 92% of the total care costs in this study.
Discussion: Policy interventions are urgently needed to address the dementia-care challenges in Benin, especially because economic transitions and educational advancements may reduce the availability of informal caregivers. This emphasizes the vital role of informal caregivers and underscores the need of implementing dementia policies to support families facing the evolving challenges of dementia care.
DOI: 10.6084/m9.figshare.25151074
title: Complete mitochondrial genome of larged-eye pygmy goby <i>Trimma macrophthalmus</i> (Teleostei, Gobiidae) and its phylogenetic implications

description: <i>Trimma macrophthalmus</i> is a colorful pygmy goby that is widely associated with coral and distributed in the Indo-Pacific Ocean. Here, the complete mitochondrial genome of <i>T. macrophthalmus</i> was first sequenced and annotated. The entire mitogenome is a typical circular molecule (16,943 bp in total length) containing 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region (CR). The overall base composition is 29.6% for A, 15.6% for G, 27.9% for C and 26.9% for T. Phylogenetic tree was reconstructed using concatenated 13 protein coding genes sequences of the 38 related taxa. The phylogenetic analysis indicated that <i>T. macrophthalmus</i> was most closely related to <i>T. okinawae</i>. These findings will contribute for further genetic studies such as evolution, DNA barcoding and molecular phylogeny of genus <i>Trimma</i> and related gobiid fishes.
DOI: 10.6084/m9.figshare.25151074.v1
title: Complete mitochondrial genome of larged-eye pygmy goby <i>Trimma macrophthalmus</i> (Teleostei, Gobiidae) and its phylogenetic implications

description: <i>Trimma macrophthalmus</i> is a colorful pygmy goby that is widely associated with coral and distributed in the Indo-Pacific Ocean. Here, the complete mitochondrial genome of <i>T. macrophthalmus</i> was first sequenced and annotated. The entire mitogenome is a typical circular molecule (16,943 bp in total length) containing 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region (CR). The overall base composition is 29.6% for A, 15.6% for G, 27.9% for C and 26.9% for T. Phylogenetic tree was reconstructed using concatenated 13 protein coding genes sequences of the 38 related taxa. The phylogenetic analysis indicated that <i>T. macrophthalmus</i> was most closely related to <i>T. okinawae</i>. These findings will contribute for further genetic studies such as evolution, DNA barcoding and molecular phylogeny of genus <i>Trimma</i> and related gobiid fishes.
DOI: 10.6084/m9.figshare.25125690
title: Characterization and phylogenetic analysis of the complete plastid genome of <i>Theobroma bicolor</i> (Malvaceae) from Peru

description: <i>Theobroma bicolor</i> Bonpl. 1806 is distributed in the Neotropics from southern Mexico to the Peruvian and Brazilian Amazon. High-throughput sequencing of <i>T. bicolor</i> from Peru (KUELAP2926) resulted in the assembly of its complete plastid genome (GenBank accession number OQ557154). The chloroplast genome of <i>T. bicolor</i> is A + T-rich (62.97%), having 160,317 bp in size and containing 130 genes; including a pair of inverted repeat regions (IRs) of 25,462 bp separated by a large single copy region (LSC) of 89,221 bp and a small single copy region (SSC) of 20,172 bp. This plastid genome is similar in length, content, and organization to other members of the genus <i>Theobroma</i>. Phylogenetic analyses of <i>T. bicolor</i> support its sistership to the clade comprising <i>T. cacao</i> and <i>T. grandiflorum</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Theobroma</i>.
DOI: 10.6084/m9.figshare.25125690.v1
title: Characterization and phylogenetic analysis of the complete plastid genome of <i>Theobroma bicolor</i> (Malvaceae) from Peru

description: <i>Theobroma bicolor</i> Bonpl. 1806 is distributed in the Neotropics from southern Mexico to the Peruvian and Brazilian Amazon. High-throughput sequencing of <i>T. bicolor</i> from Peru (KUELAP2926) resulted in the assembly of its complete plastid genome (GenBank accession number OQ557154). The chloroplast genome of <i>T. bicolor</i> is A + T-rich (62.97%), having 160,317 bp in size and containing 130 genes; including a pair of inverted repeat regions (IRs) of 25,462 bp separated by a large single copy region (LSC) of 89,221 bp and a small single copy region (SSC) of 20,172 bp. This plastid genome is similar in length, content, and organization to other members of the genus <i>Theobroma</i>. Phylogenetic analyses of <i>T. bicolor</i> support its sistership to the clade comprising <i>T. cacao</i> and <i>T. grandiflorum</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Theobroma</i>.
DOI: 10.6084/m9.figshare.25151077
title: Chloroplast genome of <i>Ocimum basilicum</i> var. <i>purpurascens</i> Bentham 1830 (Lamiaceae)

description: <i>Ocimum basilicum</i> var. <i>purpurascens</i> Bentham 1830 (Red Rubin Basil) is an aromatic herb belonging to the family Lamiaceae and is known for its medicinal uses. It is commonly used in traditional medicine to treat cardiovascular diseases and obesity. It possesses anti-inflammatory, antioxidant, antifungal, and anti-spasmodic properties. In our recent study, we assembled the chloroplast genome sequence of <i>O. basilicum</i> var. <i>purpurascens</i> using Illumina paired-end sequencing technology. The assembled chloroplast genome was 152,407 base pairs (bp), inclusive of a large single-copy (LSC) region accounting for 83,409 bp and a small single-copy (SSC) region spanning 17,604 bp. Two inverted repeats (IRs) interspersed these regions, each 25,697 bp long. The chloroplast genome harbored 132 genes, comprising 88 protein-coding genes, 36 transfer RNA (tRNA), and eight rRNA genes. Among these, nine genes encompassed a single intron, two presented with two introns, with the remaining devoid of any introns. The overall GC content of the chloroplast genome was determined to be 38%. The GC content in the LSC, SSC, and IR regions was 35.9%, 31.6%, and 43.1%, respectively. Our phylogenetic exploration of the chloroplast genomes elucidated that <i>O. basilicum</i> var. <i>purpurascens</i> exhibits close genetic affinity with <i>O. basilicum</i> var. <i>basilicum</i> and other constituents of the <i>Ocimum</i> genus within the Lamiaceae family.
DOI: 10.6084/m9.figshare.25151077.v1
title: Chloroplast genome of <i>Ocimum basilicum</i> var. <i>purpurascens</i> Bentham 1830 (Lamiaceae)

description: <i>Ocimum basilicum</i> var. <i>purpurascens</i> Bentham 1830 (Red Rubin Basil) is an aromatic herb belonging to the family Lamiaceae and is known for its medicinal uses. It is commonly used in traditional medicine to treat cardiovascular diseases and obesity. It possesses anti-inflammatory, antioxidant, antifungal, and anti-spasmodic properties. In our recent study, we assembled the chloroplast genome sequence of <i>O. basilicum</i> var. <i>purpurascens</i> using Illumina paired-end sequencing technology. The assembled chloroplast genome was 152,407 base pairs (bp), inclusive of a large single-copy (LSC) region accounting for 83,409 bp and a small single-copy (SSC) region spanning 17,604 bp. Two inverted repeats (IRs) interspersed these regions, each 25,697 bp long. The chloroplast genome harbored 132 genes, comprising 88 protein-coding genes, 36 transfer RNA (tRNA), and eight rRNA genes. Among these, nine genes encompassed a single intron, two presented with two introns, with the remaining devoid of any introns. The overall GC content of the chloroplast genome was determined to be 38%. The GC content in the LSC, SSC, and IR regions was 35.9%, 31.6%, and 43.1%, respectively. Our phylogenetic exploration of the chloroplast genomes elucidated that <i>O. basilicum</i> var. <i>purpurascens</i> exhibits close genetic affinity with <i>O. basilicum</i> var. <i>basilicum</i> and other constituents of the <i>Ocimum</i> genus within the Lamiaceae family.
DOI: 10.6084/m9.figshare.25200796.v1
title: The complete chloroplast genome of <i>Philodendron hederaceum</i> (Jacq.) Schott 1829 (Alismatales: Araceae)

description: <i>Philodendron hederaceum</i> (Jacq.) Schott 1829, a species of the Araceae family, is a foliage plant of ornamental value. The complete chloroplast genome sequence of <i>Philodendron hederaceum</i> was obtained by the <i>de novo</i> assembly of NovaSeq 6000 (Illumina Co., San Diego, CA) paired-end short reads and Oxford Nanopore long reads. The complete chloroplast genome of <i>P. hederaceum</i> was 168,609 bp in length, with a large single-copy (LSC) region of 94,393 bp, a small single-copy (SSC) region of 25,774 bp, and a pair of identical inverted repeat regions (IRs) of 24,221 bp. The genome contained a total of 129 genes, including 85 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The phylogenetic analysis of <i>P. hederaceum</i> with 19 related species and two outgroup species revealed the closest taxonomical relationship with <i>Philodendron lanceolatum</i> in the Araceae family.