cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3365083.08fu
title: SH3365083.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365084.08fu
title: SH3365084.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365085.08fu
title: SH3365085.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365086.08fu
title: SH3365086.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365087.08fu
title: SH3365087.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365088.08fu
title: SH3365088.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3365089.08fu
title: SH3365089.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.20321572
title: Integrative floristics: a modern approach to biodiversity surveys in the molecular era, as applied to an expedition to the Khamar-Daban range, southern Siberia, Russia

description: We report the results of an international bryological expedition to the Khamar-Daban mountain range in Russian southern Siberia. The novel approach of integrative floristics is introduced here as a method of surveying the flora of a region by using a combination of morphological and molecular evidence to identify and verify unexpected findings. We show that use of this approach can deliver a high level of credibility in cases in which direct molecular comparison is possible or the relevant data can be easily obtained from reliable studies informing recent treatments. Integrative floristics can also be used to identify potential taxonomic problems requiring further study. Conventional identification methods based on plant anatomy and morphology were supplemented with molecular barcoding (nuclear ITS, plastid <i>trn</i>L–<i>trn</i>F, <i>rps</i>4 and <i>atp</i>B–<i>rbc</i>L regions) of specimens that either did not fit existing morphological concepts perfectly or for which records were unexpected based on previously established phytogeographical patterns. In total, we recorded ca 380 species of mosses and ca 150 species of liverworts from five localities on the northern slopes of the Khamar-Daban range. Such floristic richness indicates a hotspot of bryophyte diversity with a remarkably high proportion of suboceanic species, such as <i>Brachydontium trichodes</i> (F.Weber) Milde, <i>Herzogiella striatella</i> (Brid.) Z.Iwats. and <i>Racomitrium macounii</i> subsp. <i>alpinum</i> (E.Lawton) Frisvoll. Nearly 20% of specimens were identified or checked using DNA barcoding. This approach showed the presence of previously unrecorded species in a number of genera, including <i>Didymodon</i>, <i>Neckera</i> and <i>Pseudohygrohypnum</i>.
DOI: 10.6084/m9.figshare.20321572.v1
title: Integrative floristics: a modern approach to biodiversity surveys in the molecular era, as applied to an expedition to the Khamar-Daban range, southern Siberia, Russia

description: We report the results of an international bryological expedition to the Khamar-Daban mountain range in Russian southern Siberia. The novel approach of integrative floristics is introduced here as a method of surveying the flora of a region by using a combination of morphological and molecular evidence to identify and verify unexpected findings. We show that use of this approach can deliver a high level of credibility in cases in which direct molecular comparison is possible or the relevant data can be easily obtained from reliable studies informing recent treatments. Integrative floristics can also be used to identify potential taxonomic problems requiring further study. Conventional identification methods based on plant anatomy and morphology were supplemented with molecular barcoding (nuclear ITS, plastid <i>trn</i>L–<i>trn</i>F, <i>rps</i>4 and <i>atp</i>B–<i>rbc</i>L regions) of specimens that either did not fit existing morphological concepts perfectly or for which records were unexpected based on previously established phytogeographical patterns. In total, we recorded ca 380 species of mosses and ca 150 species of liverworts from five localities on the northern slopes of the Khamar-Daban range. Such floristic richness indicates a hotspot of bryophyte diversity with a remarkably high proportion of suboceanic species, such as <i>Brachydontium trichodes</i> (F.Weber) Milde, <i>Herzogiella striatella</i> (Brid.) Z.Iwats. and <i>Racomitrium macounii</i> subsp. <i>alpinum</i> (E.Lawton) Frisvoll. Nearly 20% of specimens were identified or checked using DNA barcoding. This approach showed the presence of previously unrecorded species in a number of genera, including <i>Didymodon</i>, <i>Neckera</i> and <i>Pseudohygrohypnum</i>.
DOI: 10.6084/m9.figshare.21388359
title: understanding the adsorption mechanism of cations of N-A-S-H gel supplementary Material.docx

description: The supplemetary material of understanding the adsorption mechanism of cations on the surface of sodium aluminate-silicate hydrate (N-A-S-H) gel: A molecular dynamics simulation
DOI: 10.6084/m9.figshare.21388359.v1
title: understanding the adsorption mechanism of cations of N-A-S-H gel supplementary Material.docx

description: The supplemetary material of understanding the adsorption mechanism of cations on the surface of sodium aluminate-silicate hydrate (N-A-S-H) gel: A molecular dynamics simulation
DOI: 10.6084/m9.figshare.21210659
title: Microscopic Images

description: This folder contains the complete microscopic image dataset for Galeus melastomus and Etmopterus spinax, including metadata (.xml files from LAS) and annotated rois (.roi files from Fiji and .json files from Hasty).
DOI: 10.5281/zenodo.6421339
title: Harmolyze_Dataset

description: A dataset from a master thesis to compare none gamified vs. gamified learning software prototype in regard of motivation. Study took place in potsdam from 27-05-2021 to 20-06-2021 including music professors, students and docents. Dataset is used in "Prototyping an interactive learning environment following a gamification approach" by Reuss, F. and Wiepke, A. To run the app used to gather this dataset, please have a look into our git repository: https://github.com/flreuss/harmolyze
description: {"references": ["https://github.com/flreuss/harmolyze"]}
DOI: 10.5281/zenodo.6421338
title: Harmolyze_Dataset

description: A dataset from a master thesis to compare none gamified vs. gamified learning software prototype in regard of motivation. Study took place in potsdam from 27-05-2021 to 20-06-2021 including music professors, students and docents. Dataset is used in "Prototyping an interactive learning environment following a gamification approach" by Reuss, F. and Wiepke, A. To run the app used to gather this dataset, please have a look into our git repository: https://github.com/flreuss/harmolyze
description: {"references": ["https://github.com/flreuss/harmolyze"]}
DOI: 10.48670/moi-00152
title: European North West Shelf/Iberia Biscay Irish Seas – High Resolution ODYSSEA L4 Sea Surface Temperature Analysis
DOI: 10.48670/moi-00154
title: North Sea/Baltic Sea - Sea Surface Temperature Analysis L3S
DOI: 10.17909/t9-p7k6-4b32
title: DIAmante

description: The DIAmante project provides raw and systematic-corrected multi-Sector light curves extracted from TESS Full Frame Images (FFIs). DIAmante exploits a new pipeline based on difference image analysis which has been specifically developed to analyze FFIs. The main targets are FGKM dwarf and sub-giant stars across the entire sky. The team provides additional supporting material as catalogs and data validation documents for specific targets of interest (e.g. transiting planets). The first data release presents the results (light curves and data validation documents) from a search for transiting planets in the Southern ecliptic hemisphere. The second data release presents the results of a search for transiting planets on a set of 1.4 million DIAmante light curves extracted from the first 26 sectors of TESS data.
DOI: 10.48670/moi-00155
title: Baltic Sea- Sea Surface Temperature Analysis L4
DOI: 10.5281/zenodo.7244905
title: Link to dataset related to article "Multimodal single-cell profiling of intrahepatic cholangiocarcinoma defines hyperactivated Tregs as a potential therapeutic target "

description: This record contains raw data related to article “Multimodal single-cell profiling of intrahepatic cholangiocarcinoma defines hyperactivated Tregs as a potential therapeutic target" Abstract: <strong>Background & aims: </strong> The landscape and function of the immune infiltrate of intrahepatic cholangiocarcinoma (iCCA), a rare, yet aggressive tumor of the biliary tract, remains poorly characterized, limiting development of successful immunotherapies. Herein, we aimed to define the molecular characteristics of tumor-infiltrating leukocytes with a special focus on CD4+ regulatory T cells (Tregs). <strong>Methods: </strong> We used high-dimensional single-cell technologies to characterize the T-cell and myeloid compartments of iCCA tissues, comparing these with their tumor-free peritumoral and circulating counterparts. We further used genomics and cellular assays to define the iCCA-specific role of a novel transcription factor, mesenchyme homeobox 1 (MEOX1), in Treg biology. <strong>Results: </strong> We found poor infiltration of putative tumor-specific CD39+ CD8+ T cells accompanied by abundant infiltration of hyperactivated CD4+ Tregs. Single-cell RNA-sequencing identified an altered network of transcription factors in iCCA-infiltrating compared to peritumoral T cells, suggesting reduced effector functions by tumor-infiltrating CD8+ T cells and enhanced immunosuppression by CD4+ Tregs. Specifically, we found that expression of MEOX1 was highly enriched in tumor-infiltrating Tregs, and demonstrated that MEOX1 overexpression is sufficient to reprogram circulating Tregs to acquire the transcriptional and epigenetic landscape of tumor-infiltrating Tregs. Accordingly, enrichment of the MEOX1-dependent gene program in Tregs was strongly associated with poor prognosis in a large cohort of patients with iCCA. <strong>Conclusions: </strong> We observed abundant infiltration of hyperactivated CD4+ Tregs in iCCA tumors along with reduced CD8+ T-cell effector functions. Interfering with hyperactivated Tregs should be explored as an approach to enhance antitumor immunity in iCCA. <strong>Lay summary: </strong> Immune cells have the potential to slow or halt the progression of tumors. However, some tumors, such as intrahepatic cholangiocarcinoma, are associated with very limited immune responses (and infiltration of cancer-targeting immune cells). Herein, we show that a specific population of regulatory T cells (a type of immune cell that actually suppresses the immune response) are hyperactivated in intrahepatic cholangiocarcinoma. Targeting these cells could enable cancer-targeting immune cells to act more effectively and should be looked at as a potential therapeutic approach to this aggressive cancer type.
DOI: 10.5281/zenodo.7244904
title: Link to dataset related to article "Multimodal single-cell profiling of intrahepatic cholangiocarcinoma defines hyperactivated Tregs as a potential therapeutic target "

description: This record contains raw data related to article “Multimodal single-cell profiling of intrahepatic cholangiocarcinoma defines hyperactivated Tregs as a potential therapeutic target" Abstract: <strong>Background & aims: </strong> The landscape and function of the immune infiltrate of intrahepatic cholangiocarcinoma (iCCA), a rare, yet aggressive tumor of the biliary tract, remains poorly characterized, limiting development of successful immunotherapies. Herein, we aimed to define the molecular characteristics of tumor-infiltrating leukocytes with a special focus on CD4+ regulatory T cells (Tregs). <strong>Methods: </strong> We used high-dimensional single-cell technologies to characterize the T-cell and myeloid compartments of iCCA tissues, comparing these with their tumor-free peritumoral and circulating counterparts. We further used genomics and cellular assays to define the iCCA-specific role of a novel transcription factor, mesenchyme homeobox 1 (MEOX1), in Treg biology. <strong>Results: </strong> We found poor infiltration of putative tumor-specific CD39+ CD8+ T cells accompanied by abundant infiltration of hyperactivated CD4+ Tregs. Single-cell RNA-sequencing identified an altered network of transcription factors in iCCA-infiltrating compared to peritumoral T cells, suggesting reduced effector functions by tumor-infiltrating CD8+ T cells and enhanced immunosuppression by CD4+ Tregs. Specifically, we found that expression of MEOX1 was highly enriched in tumor-infiltrating Tregs, and demonstrated that MEOX1 overexpression is sufficient to reprogram circulating Tregs to acquire the transcriptional and epigenetic landscape of tumor-infiltrating Tregs. Accordingly, enrichment of the MEOX1-dependent gene program in Tregs was strongly associated with poor prognosis in a large cohort of patients with iCCA. <strong>Conclusions: </strong> We observed abundant infiltration of hyperactivated CD4+ Tregs in iCCA tumors along with reduced CD8+ T-cell effector functions. Interfering with hyperactivated Tregs should be explored as an approach to enhance antitumor immunity in iCCA. <strong>Lay summary: </strong> Immune cells have the potential to slow or halt the progression of tumors. However, some tumors, such as intrahepatic cholangiocarcinoma, are associated with very limited immune responses (and infiltration of cancer-targeting immune cells). Herein, we show that a specific population of regulatory T cells (a type of immune cell that actually suppresses the immune response) are hyperactivated in intrahepatic cholangiocarcinoma. Targeting these cells could enable cancer-targeting immune cells to act more effectively and should be looked at as a potential therapeutic approach to this aggressive cancer type.
DOI: 10.48670/moi-00157
title: Black Sea - High Resolution Diurnal Subskin Sea Surface Temperature Analysis
DOI: 10.48670/moi-00158
title: Black Sea - High Resolution and Ultra High Resolution L3S Sea Surface Temperature
DOI: 10.34740/kaggle/dsv/4385203
title: COVID Vaccination in World (updated daily)
DOI: 10.48670/moi-00159
title: Black Sea High Resolution and Ultra High Resolution Sea Surface Temperature Analysis
DOI: 10.5281/zenodo.7244939
title: Dataset of 5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures

description: Dataset containing 5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures which is accopaning the data descriptor publication titled "5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures and their Automated Analysis" by the same authors.
DOI: 10.5281/zenodo.7244938
title: Dataset of 5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures

description: Dataset containing 5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures which is accopaning the data descriptor publication titled "5035 Conductivity Experiments for Lithium-Ion Battery Electrolyte Formulations at Various Temperatures and their Automated Analysis" by the same authors.
DOI: 10.48670/moi-00160
title: Black Sea - High Resolution L4 Sea Surface Temperature Reprocessed
DOI: 10.5281/zenodo.7244964
title: MS data linked to manuscript https://doi.org/10.3390/ijms22169055

description: Dataset of MS raw data linked to the publication https://doi.org/10.3390/ijms22169055. Data contains: 1. 90% MeOH fraction_Rhodococcus_neg. raw file corresponding to the UPLC-ESI-HRMS/MS spectra of the enriched fraction containing threlolipids. 2. Mgf file generated through Mzmine. The file contains 22 aligned MS/MS spectra corresponding to the 22 growth condition of the bacteria.
DOI: 10.5281/zenodo.7244963
title: MS data linked to manuscript https://doi.org/10.3390/ijms22169055

description: Dataset of MS raw data linked to the publication https://doi.org/10.3390/ijms22169055. Data contains: 1. 90% MeOH fraction_Rhodococcus_neg. raw file corresponding to the UPLC-ESI-HRMS/MS spectra of the enriched fraction containing threlolipids. 2. Mgf file generated through Mzmine. The file contains 22 aligned MS/MS spectra corresponding to the 22 growth condition of the bacteria.
DOI: 10.5281/zenodo.7244988
title: Gaia DR3 in nearby galaxies

description: Data files for "Gaia DR3 and nearby galaxies: where do foregrounds matter?" (2022, MNRAS submitted)
DOI: 10.5281/zenodo.7244987
title: Gaia DR3 in nearby galaxies

description: Data files for "Gaia DR3 and nearby galaxies: where do foregrounds matter?" (2022, MNRAS submitted)