cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3641666_d1
title: Additional file 3: of The Mediator complex subunits MED25/PFT1 and MED8 are required for transcriptional responses to changes in cell wall arabinose composition and glucose treatment in Arabidopsis thaliana

description: ANOVA tables of gene expression in dark grown seedlings of Col, hsr8-1 , hsr8-1pft1-2 and pft1-2 . (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3641666_d4
title: Additional file 2: of The Mediator complex subunits MED25/PFT1 and MED8 are required for transcriptional responses to changes in cell wall arabinose composition and glucose treatment in Arabidopsis thaliana

description: ANOVA tables of glucose- responsive gene expression in Col and pft1-2 . (XLS 1314Â kb)
DOI: 10.6084/m9.figshare.c.3641678_d2
title: Additional file 1: Table S1. of The role of structural parameters in DNA cyclization

description: Structural parameters for the straight homogenous DNA model. Table S2: Structural parameters for the curved DNA model. Table S3: Structural parameters for SET1. Table S4: Structural parameters for SET2. Table S5: Structural parameters for SET3. Table S6: Structural parameters for SET4. Table S7: Structural parameters for SET5. Table S8: Structural parameters for SET6. Table S9: Structural parameters for SET7. Table S10: Sequences with experimentally measured and computational calculated J factors. (XLSX 127 kb)
DOI: 10.6084/m9.figshare.c.3641684_d1
title: MOESM1 of T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis

description: Additional file 1: Table S1. Complete list of identified genes, expression values, and significance testing.
DOI: 10.15468/dl.n9wkf7
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-118.11751 33.72736,-117.61602 33.29078,-117.40707 33.29078,-117.27187 33.44681,-117.33824 33.55545,-117.49311 33.72123,-117.67502 33.93361,-117.92822 33.97032,-118.08064 33.86424,-118.11751 33.72736))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vertiginidae"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033920-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641699_d1
title: Additional file 1: of Prediction of gestational age based on genome-wide differentially methylated regions

description: An Excel file containing information regarding CpGs and genes discussed in the present study. Table S1. All p B
DOI: 10.5281/zenodo.14451963
title: Programming scheduled self-assembly of circadian materials
DOI: 10.5281/zenodo.14451964
title: Programming scheduled self-assembly of circadian materials
DOI: 10.6084/m9.figshare.c.3641717_d3
title: MOESM5 of Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

description: Additional file 5: Table S2. Summary of lignocellulose acting proteins identified in the spruce wood cultivation proteomes of P. radiata by peptide LC–MS/MS analysis.
DOI: 10.6084/m9.figshare.c.3641717_d5
title: MOESM1 of Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

description: Additional file 1: Table S1. Complete list of gene models, their locations in the genome assembly, transcript counts and normalized abundances, peptide and protein abundances, and functional annotations, of the transcriptome and proteome of P. radiata cultivated on spruce wood.
DOI: 10.6084/m9.figshare.c.3641720_d3
title: Additional file 2: of What is the impact of flexicurity on the chances of entry into employment for people with low education and activity limitations due to health problems? A comparison of 21 European countries using Qualitative Comparative Analysis (QCA)

description: QCA data set. Original and calibrated scores. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3641789_d2
title: Additional file 2: Table S1. of The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer

description: Information on all 13 genomes used in this manuscript. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3641789_d1
title: Additional file 1: Table S2. of The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer

description: List of locus tags for all of the genes mentioned explicitly or present in figures in this manuscript. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3641801_d1
title: Additional file 3: of The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements

description: Set of pSc250 family monomers used for reconstruction of phylogenetic network. File can be opened in BioEdit Sequence Alignment Editor. The name of each sequence consists of two parts: the right part from the dot points the chromosome-specific library, the left part from the dot points the read number in library. (TXT 550 kb)
DOI: 10.6084/m9.figshare.c.3641801_d3
title: Additional file 2: of The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements

description: Set of pSc200 family monomers used for reconstruction of phylogenetic network. File can be opened in BioEdit Sequence Alignment Editor. The name of each sequence consists of two parts: the right part from the dot points the chromosome-specific library, the left part from the dot points the read number in library. (TXT 115 kb)
DOI: 10.6084/m9.figshare.c.3641804_d1
title: Additional file 1: Table S1. of Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3

description: Identified DMRâ  s with sensitivity and specificity ranked on the sum of both. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3641843_d3
title: Additional file 3: of The essential genome of Streptococcus agalactiae

description: Dataset S2. Detailed Gene Fitness Data. Tab 1 (A909 Final Fitness Assignments) lists A909 genes alongside fitness classification as outlined in the main text. Tabs 2–4 (T0-3 ESSENTIALS Output) show raw data from ESSENTIALS analysis of sequencing data from pooled reads at each of three time points. The columns list (from left to right) gene loci, TA sites per locus, the expected insertion number given the null hypothesis that the gene is nonessential, the log2 FC value for that gene’s experimental vs. expected insertion count, the p value for the FC (generalized linear model likelihood ratio test, corrected for multiple comparisons), start and stop base pair positions for the gene’s ORF, the strand on which the ORF is read, the gene length, its name (if named), and the protein product (if known). Tab 5 (RegPrecise Regulons) lists predicted GBS regulon gene participants. Gene loci are provided for the GBS reference strain 2603 V/R and the A909 homolog. Final fitness category assignments are provided for each gene. Tab 6 (2-Component Systems) shows predicted gene participation in two-component systems identified by P2CS. Columns (from left to right) list GBS gene loci, the original literature description of the gene product function (not necessarily in GBS), the gene’s fitness category assignment, the functional class predicted by domain architecture (either response regulator [RR] or sensor histidine kinase [HK]), and whether the function of the gene or its homolog has been validated experimentally. (XLSX 815 kb)
DOI: 10.6084/m9.figshare.c.3641864_d1
title: Additional file 1: of Comparison of voluntary food intake and palatability of commercial weight loss diets in healthy dogs and cats

description: Computer spreadsheet containing data from all studies. (XLSX 36Â kb)
DOI: 10.57967/hf/3798
title: homodimer_benchmark
DOI: 10.6084/m9.figshare.c.3641861_d1
title: MOESM1 of Implementation and evaluation of amyloidosis subtyping by laser-capture microdissection and tandem mass spectrometry

description: Additional file 1. Summary data for amyloidosis subtyping.
DOI: 10.6084/m9.figshare.c.3641867_d1
title: Additional file 1: Table S1. of Heme pathway evolution in kinetoplastid protists

description: Table of localization predictions for proteins involved in heme metabolism in Kinetoplastea. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3616025_d1
title: Additional file 1: of Decreased long noncoding RNA SPRY4-IT1 contributing to gastric cancer cell metastasis partly via affecting epithelialâ  mesenchymal transition

description: Table S1. The primer and siRNA sequence.
DOI: 10.6084/m9.figshare.c.3615986_d8
title: Additional file 2: Table S2. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: Predicted promoter elements of common bean NAC genes. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.c.3615986_d7
title: Additional file 3: Table S3. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: Conserved motifs of common bean NAC domain proteins. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3615986_d5
title: Additional file 6: Table S6. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: Transcriptome data (RPKM) of DENs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3615986_d6
title: Additional file 8: Table S7. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: Predicted promoter elements of NAC genes from common bean, rice, soybean and Arabidopsis. (XLSX 199Â kb)
DOI: 10.6084/m9.figshare.c.3615986_d3
title: Additional file 1: Table S1. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: The 106 putative members of the NAC family of genes identified in common bean. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.c.3615986_d1
title: Additional file 4: Table S4. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: Expression data of NAC genes in common bean. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3615986_d2
title: Additional file 5: Table S5. of Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean

description: The primer sequences for DENs used for qRT-PCR. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3602138_d4
title: Additional file 5: Table S3. of Identification of internalin-A-like virulent proteins in Leishmania donovani

description: Docking results for L. donovani Inl-A-like proteins with human E-cadherin (hEC1). (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3602138_d6
title: Additional file 6: Table S4. of Identification of internalin-A-like virulent proteins in Leishmania donovani

description: Probable hydrogen bond forming residues in E9B7L9-hEC1, E9BMT7-hEC1 and E9BUL5-hEC1 complexes. Table S5. Probable hydrophobic interaction forming residues in E9B7L9-hEC1, E9BMT7-hEC1 and E9BUL5-hEC1 complexes. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3602162_d1
title: Additional file 2: Table S1. of Alteration of actin dependent signaling pathways associated with membrane microdomains in hyperlipidemia

description: Mass spectrometry data of differentially abundant proteins extracted from Protein Center databases. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.c.3602174_d1
title: Additional file 8: Table S8. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of DEGs specifically modulated in 3Â h-treated root samples of Eurosis or Loto. (XLSX 184 kb)
DOI: 10.6084/m9.figshare.c.3602174_d2
title: Additional file 7: Table S7. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: List of enriched GO terms for the contrasts with accompanying enrichment p-values as resulting from goseq analysis. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3602162_d5
title: Additional file 5: Table S2. of Alteration of actin dependent signaling pathways associated with membrane microdomains in hyperlipidemia

description: (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3602174_d3
title: Additional file 2: Table S2. of Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

description: Pearson correlation coefficients of samples. (XLSX 25 kb)
DOI: 10.15468/dl.pwvgn3
title: Occurrence Download

description: A dataset containing 1211691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "Year 1978-2023"
 ]
}

 The dataset includes 1211691 records from 803 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033907-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxjhp8
title: Occurrence Download

description: A dataset containing 15061384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 15061384 records from 460 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033873-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607190_d1
title: Additional file 4: Table S3. of Leveraging global gene expression patterns to predict expression of unmeasured genes

description: Filtering of samples using inclusion criteria. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3607160_d11
title: Additional file 7: Table S3. of A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication

description: PAG â  consensusâ   module gene lists/details (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3607190_d3
title: Additional file 1: Table S1. of Leveraging global gene expression patterns to predict expression of unmeasured genes

description: Distribution of eligible genes across PANTHER Go-slim pathways. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3607190_d4
title: Additional file 3: Table S2. of Leveraging global gene expression patterns to predict expression of unmeasured genes

description: Summary of GGS parameter sweep and expression prediction results. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3607220_d1
title: MOESM1 of Bioreactor performance parameters for an industrially-promising methanotroph Methylomicrobium buryatense 5GB1

description: Additional file 1: Table S1 . 5GB1 fatty acid composition when grown on methane and methanol. M. buryatense fatty acid composition.
DOI: 10.6084/m9.figshare.c.3607226_d2
title: Additional file 6: of Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia

description: ENCODE enrichment results. This is an “xls” file that provides the ENCODE epi-genomic mark enrichment analysis results from Gm12878 cell line with the name and the description of the datasets, enrichment p values that are adjusted for multiple testing using FDR, for hypo/hyper-C-DMRs in separate excel sheets, respectively, along with the name of the regulatory mark. It also consists of enrichment analysis results from all ENCODE cell lines for each regulatory mark in hypo- and hyper-C-DMRs. (XLS 117 kb)
DOI: 10.6084/m9.figshare.c.3609500_d1
title: Additional file 1: of A knowledge synthesis of culturally- and spiritually-sensitive end-of-life care: findings from a scoping review

description: A body of data consisting of key features, characteristics and summaries of all included studies. The file is entitled, â  CS_EoL_Data_Charting_Form_12Jan2015_FINALâ  . (XLS 605Â kb)
DOI: 10.6084/m9.figshare.c.3609458_d9
title: Additional file 10: Table S3. of A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues

description: Biological functions enriched in Î Np63 and TAp63 networks by IPA. Column A provides the diseases/biological functions, column B provides the p value of enrichment for the functions (calculated by Fisherâ  s exact test) and columns C and D provide the number and details of molecules that are involved in that function. (CSV 2 kb)
DOI: 10.6084/m9.figshare.c.3609506_d2
title: Additional file 3: of Systematic protein-protein interaction and pathway analyses in the idiopathic inflammatory myopathies

description: DAPPLE output. Excel file of the output provided by http://www.broadinstitute.org/mpg/dapple/dappleTMP.php from each DAPPLE analysis on SNPs, autoantibody targets, a subset of autoantibody targets and SNPs and autoantibody target subset combined (XLSX 6162 kb)
DOI: 10.6084/m9.figshare.c.3609506_d7
title: Additional file 1: of Systematic protein-protein interaction and pathway analyses in the idiopathic inflammatory myopathies

description: Input for analyses. Excel file of the information in TableÂ 1 about myositis-specific and associated autoantibody targets and significant or suggestive SNPs used in analyses (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3609536_d3
title: Additional file 3: of The social network around influenza vaccination in health care workers: a cross-sectional study

description: Study survey. (GRAPHML 63 kb)
DOI: 10.6084/m9.figshare.c.3611510_d4
title: Additional file 1: Table S1. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

description: Affymetrix DNA microarray analysis of gene expression in HuH6shCTNNB1 cells in response to Dox treatment. Gene expression profile was analyzed with Affymetrix DNA microarrays and the expression profile of HuH6shCTNNB1 treated with Dox for 2 days was compared with that of untreated HuH6shCTNNB1 cells. (XLSX 1641 kb)
DOI: 10.6084/m9.figshare.c.3611516_d1
title: Additional file 1: of Assessing urinary flow rate, creatinine, osmolality and other hydration adjustment methods for urinary biomonitoring using NHANES arsenic, iodine, lead and cadmium data

description: Supporting R programming script for the numerical derivation of opimum Araki's b values and adjustment of urinary analyte concentrations using the methods described in this paper. (R 8 kb)
DOI: 10.6084/m9.figshare.c.3611528_d1
title: Additional file 3: of Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

description: Data file with 1,837 SNPs. (VCF 287Â kb)
DOI: 10.6084/m9.figshare.c.3613397_d1
title: Additional file 2 of Choosing panels of genomics assays using submodular optimization

description: List of all assays used. File is in gzipped, tab-delimited format. Columns correspond to: (1) assay type, (2) cell type, (3) file name of file on original server, and (4) URL of server that the file was downloaded from. (TAB 300 kb)
DOI: 10.6084/m9.figshare.c.3613415_d1
title: Additional file 7: Table S7. of Dormant non-culturable Mycobacterium tuberculosis retains stable low-abundant mRNA

description: Candidate non-coding RNAs. Candidate non-coding transcripts were identified by visual analysis of the transcriptional profiles and designated according to the nomenclature suggested in [79]. For each candidate non-coding RNA its type, approximate coordinates, average RPKM value in each sample, original name, and references to the studies where the transcript has been described are presented. (XLSX 13 kb)
DOI: 10.15468/dl.6hgtqk
title: Occurrence Download

description: A dataset containing 79209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Himantopus mexicanus (P.L.S.Müller, 1776)"
 ]
}

 The dataset includes 79209 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033922-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gssx2u
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atheta picipennis (Mannerheim, 1843)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 252 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018250-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17172/nomad/2025.03.20-1
title: NOMAD dataset: bisanthene/Cu(110)
DOI: 10.15468/dl.v9aem9
title: Occurrence Download

description: A dataset containing 67213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron ponticum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is Europe"
 ]
}

 The dataset includes 67213 records from 263 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018239-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/d81eb52d8e544a26
title: Custom collection of lidar, and radar data from Cabauw, and Lutjewad on 19 Mar 2025
DOI: 10.15468/dl.9nhn7t
title: Occurrence Download

description: A dataset containing 7092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Panthera pardus (Linnaeus, 1758)"
 ]
}

 The dataset includes 7092 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018251-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kau92p
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-15 0,6 0,6 45,-15 45,-15 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sphagnum teres (Schimp.) Ångstr. ex C.Hartm."
 ]
}

 The dataset includes 298 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018252-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mz3r7w
title: Occurrence Download

description: A dataset containing 2105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atheta longicornis (Gravenhorst, 1802)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2105 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018253-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62f5s2
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus acherdophylla Trel."
 ]
}

 The dataset includes 100 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018255-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.