cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/5da407f2406f5
title: A reef shark is not resilient to interacting global change stressors

description: <p>Dataset and code for analyses presented in Bouyoucos, I. A., Watson, S. A., Planes, S., Simpfendorfer, C. A., Schwieterman, G. D., Whitney, N. M., & Rummer, J. L. (2020). <em>The power struggle: assessing interacting global change stressors via experimental studies on sharks</em>. Scientific Reports, 10. 19887.</p>
<p>See 'metadata' text file for descriptions of individual .csv files and descriptions of column headings.</p>
<p>Ethical approval to collect data presented herein was received from the James Cook University Animal Ethics Committee (A2394). Permission to collect, possess, and transport sharks and shark tissues was obtained from the French Polynesia Ministere de l'Environnement (Arrete 5129).</p>
<p>This dataset contributes to a thesis by Ian Bouyoucos to be submitted for the degree of Doctor of Philosophy from James Cook University and Ecole Pratique des Hautes Etudes.</p>
DOI: 10.25903/5beb6e4173f88
title: Ecological memory modifies the cumulative impact of recurrent climate extremes

description: <p>This dataset supports the 2018 <em>Nature Climate Change</em> publication by Terry Hughes, James Kerry, Sean Connolly (lead authors) and 10 co-authors, entitled 'Ecological memory modifies the cumulative impact of recurrent climate extremes'. It is comprised of one data file as an Excel .csv in long form:</p><p>(1) 2016-2017 data - gives (in long format) the aerial scores and Degree Heating Weeks for reefs surveyed in 2016 (1135 reefs) and in 2017 (742 reefs)</p>
DOI: 10.25903/wer2-9510
title: Participation in exercise and sport for individuals with minimal disability from multiple sclerosis: Qualitative feasibility data

description: <p>The flexible exercise participation program (FEPP) is a novel intervention developed to enable individuals with multiple sclerosis (MS) participate and progress in an exercise or sport of their choice. The FEPP is underpinned by guidelines on aerobic exercise for individuals with MS and is supported by a physiotherapist using behaviour change techniques. As part of a FEPP feasibility trial, the aim of this nested study was to explore the experience of participation in the FEPP from the perspective of individuals with MS.</p>
<p>The objectives were to</p>
<p>i) determine the acceptability of the FEPP and</p>
<p>ii) identify recommendations for improvement.</p>
<p>A mixed methods study using a sequential explanatory design was conducted. Part I consisted of a quantitative participant survey. Survey data were analysed descriptively using SPSS and informed the protocol for part II - qualitative interviews. Interview data were analysed thematically using NVivo. Part III consisted of integration of quantitative and qualitative data to allow greater explanation of survey responses. Individuals with MS who had participated in the FEPP feasibility trial were invited to take part in the study.</p>
<p>This data record includes participant demographics, survey data and analysis, focus group summaries, NVivo coding nodes, thematic maps and member checking sheets. Audio files and transcriptions are not available due to confidentiality reasons.</p>
<p>Software/equipment used to create/collect the data: Qualtrics Excel NVivo software version 12</p>
<p>Software/equipment used to manipulate/analyse the data: SPSS version 27</p>
DOI: 10.25903/7ghs-p622
title: Ingestion and retention of microplastics by corals and sponges

description: This study reveals more than 1000-fold variation in microplastic ingestion among different benthic filter-feeding genera that are abundant on coral reefs. Overall, genera with larger polyp sizes (e.g. Dipsastrea) ingested more microbeads per unit tissue area than genera with small polyps (e.g. Acropora). Microbeads were observed adhering to the external surfaces of corals and sponges, and were also ingested into the polyp cavity of hard and soft corals, and into the internal canals and chambers of sponges. After ingestion, microbeads were retained for up to 14 days although retention was variable both within- and among-genera. Finally, we observed greater ingestion of small and/or medium sized microbeads (27 – 75 µm diameter) compared with large microbeads (300 - 1000 µm diameter) for all six hard coral genera examined, but greater ingestion of medium (45 - 53 µm diameter) than small microbeads (27 - 32 µm diameter) for the two sponge genera and the soft coral Lobophytum.

Software/equipment used to create/collect the data: Aquarium-based experiments conducted at Orpheus Island Research Station and Marine Aquaculture Research Facility at James Cook University. Laboratory analysis of samples involving tissue analyses and microscopy. Histology methods to section coral tissues.

Software/equipment used to manipulate/analyse the data: Data were analysed in R
DOI: 10.25903/5caedbc8a62cb
title: Dataset describing the longitudinal density and wing length of anophelines in Solomon Islands

description: <p>A series of Human Landing Catches (HLC) were conducted in 6 villages (Jack Harbour, Kinamara, Saeragi, Tuguivili, New Mala, and Haleta) across Central and Western Province of the Solomon Islands. This work commenced on July 2015 and was completed on July 2017. The complete data that has been analysed for the below titled manuscript has been archived into one database for ease of use:</p><p>Kimberley McLaughlin, Tanya L. Russell, Allan Apairamo, Hugo Bugoro, Jance Oscar, Robert D. Cooper, Nigel W. Beebe, Scott A. Ritchie, Thomas R. Burkot (2019) The smallest Anopheles farauti occur during the peak transmission season of the Solomon Islands</p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p>
DOI: 10.25903/ewz6-6483
title: Wallace v2.0 Initiative: Wallace v1.0 Initiative Original habitat suitability modelling for plants and animals

description: <p>This dataset holds the original Wallace Initatiative 1.0 modelling for plants and animals worldwide.<br /><a href="https://wallaceinitiative.org/">https://wallaceinitiative.org/</a></p>
DOI: 10.25903/jx5t-8794
title: Haematological associations in reef shark neonates
DOI: 10.4225/28/55cad8a2dca14
title: Shallow (5 & 10 metre depth) water temperature data from the northern coast of Baudisson Island, New Ireland Province, Papua New Guinea (2012-2014)
DOI: 10.25903/5c81fc323d129
title: Global warming impairs stock-recruitment dynamics of corals

description: <p>This dataset supports the 2019 <em>Nature</em><em> </em>publication by Terry Hughes and 16 co-authors, entitled "Global warming impairs stock-recruitment dynamics of corals". It is comprised of three separate Excel files:</p>
<p>(1) Reef Summary - which lists all survey reefs and the years in which they were surveyed</p>
<p>(2) Recruitment Data - which gives counts of spawners, brooders and totals for individual panels across all survey sites, reefs and time periods</p>
<p>(3) Coral Reproductive Condition - which gives per cent gravid data and sample sizes for <em>Acropora</em> corals on assessed reefs</p>
DOI: 10.25903/68cf-zp16
title: COVID-19 and mental health in a community sample in China

description: <p class="MsoNormal">The current study aims to investigate mental health among Chinese people in the time of the COVID-19 pandemic. Statistics provided by National Health Commission of China, regarding cases and deaths per region, were used to categorise Wuhan, Hubei outside Wuhan, and elsewhere in China into high, moderate, and low infection severity areas. A sample of 1,202 Chinese participants were surveyed between April and June, 2020. The sample consisted of 763 females (63.5%) and 439 males (36.5%), with an average age of 29.62 years (SD = 12.72, range = 18-78). There were 282, 162 and 758 participants from the high (23.5%), moderate (13.4%) and low (63.1%) infection severity areas, respectively.</p><p class="MsoNormal">The full methodology is available from the Related Publications link below.</p>
DOI: 10.25903/ypbj-zf68
title: Data from: Disparities in the impacts of co-management on fishers' livelihoods

description: The record contains one dataset in csv format (INEQ_22.csv).

The dataset contains information from individual fishers (column "ID"), from 5 countries (column "country"; Kenya, Indonesia, Madagascar, Tanzania, Papua New Guinea), and 48 co-management sites (column "site). The data was collected using household surveys, semi-structured interviews with community leaders, co-management organisation leaders, and other key informants (knowledgeable fishers, elders, and other stakeholders), and analyses of secondary sources such as population censuses. The file contains data on perceived livelihood impacts from co-management ("OrgEffLivelihood"), perceived community impacts from co-management ("OrgEffComm"), gender ("sex"), education ("yrseducation"), migrant status ("migrant"), marine primary livelihood ("marlivprim"), occupational diversity ("occdiv"), relative wealth or martial style of life (mslall), trust on leaders ("trustleader"), participation in decision-making ("decispart"), participation in community events ("CommEvent"), population size  ("popn"), distance to markets ("distmktreg"), gear restrictions ("regr"), access restrictions ("regg"), area restrictions ("rega"), clear boundaries ("clearboundaries"), conflict resolution mechanisms ("confmechinter"), and graduated sanctions ("GradSanctions").



Software/equipment used to create/collect the data: Excel

Software/equipment used to manipulate/analyse the data: R
DOI: 10.4225/28/58c08a9943cf2
title: Interactions between Neobenedenia (monogenea- capsalidae) and its host, Lates calcarifer (perciformes- latidae)
DOI: 10.25903/5bd295b16d2ad
title: Can environmental DNA be used to reliably detect parasites in the aquarium fish trade?

description: <p>The following dataset was collected as part of a PhD thesis candidature by Alejandro Trujillo-González, enrolled in James Cook University, Townsville, Australia.</p><p>Data provides  threshold cycles (Ct) and melting temperature (Tm) values determined for amplicons in quantitative PCR tests and assays ran in a QuantStudio3™ Real-Time PCR System (ThermoFisher Scientific Inc., Brisbane) using QuantStudio™ Design and Analysis Software (version 1.4.2).</p><p>The full methodology is available in the publication shown in the Related Publications link below.</p>
DOI: 10.25903/n268-4772
title: Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef

description: The data was collected for the parameterisation of the influence of tuft-shaped Trichodesmium colonies on the vertical movement of Trichodesmium in the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). 

Software/equipment used to create/collect the data: The CSIRO Environmental Modelling Suite (version 1.4.0), which runs on Linux operating system

Software/equipment used to manipulate/analyse the data: R (version 4.1.1), Python (version 3.10) and MATLAB R2023b. All software are supported by Windows 10 and Linux operating systems.
DOI: 10.25903/5ec200492cc57
title: The voices of ‘at risk’ young people about services provided to them: a systematic literature review

description: <p>Abstract [Related Publication]: In Australia young people who are at risk of offending have attracted much media and policy attention. In recent times, policy reform has seen increased funding for social services delivery to support young people at risk of entering, or currently in the juvenile justice system. However, limited literature explores how young people experience services delivered to them. This systematic literature review explored what research reports on the voices of children and youth on social service delivery for young people who have offended or are at risk of offending. The review aimed to identify English language publications in the fifteen-year period from 2004 to 2018, critique their methodological quality, and analyse and describe the findings of identified studies.Through a search of electronic social sciences databases twelve (n=12) publications were identified for inclusion, including six qualitative studies, one quantitative study and five reports. The review highlighted a scarcity of research on this topic but provided evidence about how young people who are at risk of offending experienced social services, and their recommendations for effective service delivery.</p><p><strong>This dataset consists of 3 files (PDF format) that support the systematic review as follows:</strong></p><ul><li><strong>Revised_ Figure 1 PRISMA Flowchart.pdf</strong> - Prisma flowchart outlining data extraction processes</li><li><strong>Revised_ Table 2 Data Extraction table.pdf</strong> - Data extraction table</li><li><strong>Easy Read_Youth Voice research poster.pdf</strong> - This Easy Read poster reports results of a systematic literature review exploring the voices of children and youth on social service delivery for young people who have offended or are at risk of offending. Through a search of electronic social sciences databases twelve (n=12) eligible publications were identified, including six qualitative studies, one quantitative study and five reports. The review highlighted a scarcity of research on this topic but provided evidence about how young people who are at risk of offending experienced social services, and their recommendations for effective service delivery. The data analysis identified six themes: Supportive & Caring Relationships; Importance of Peers; Respectful Engagement; Dealing with Racism; Information & Clarification and Agency & Empathy. This easy read poster was developed on the recommendation of practice-based research partners to highlight the implications for practice.</li></ul>
DOI: 10.25903/ga2n-pk80
title: Ch 2. Literature review

description: <p>A review of literature relevant to the effects of soil physico-chemical or abiotic characteristics on the severity of Fusarium wilt was conducted.</p>
<p>Software/equipment used to create/collect the data: Microsoft Office</p>
<p>Software/equipment used to manipulate/analyse the data: R</p>
DOI: 10.25903/rbg8-6976
title: Kevin Crook PhD data archive

description: <p>This data was compiled and collected by Kevin Crook and included in his PhD this entitled: Assessing the Functional Roles of Rays in Coastal Sandflats. Data types include:</p><ul><li>A spreadsheet of detection data from <em>Pastinachus ater </em>(Cowtail), <em>Himantura australis </em>(Whipray), and <em>Glaucostegus typus </em>tracked with acoustic telemetry at Lucinda, QLD</li><li>A spreadsheet of detection data for four <em>P. ater </em>rays acoustically tracked with temperature sensors</li><li>A spreadsheet of GPS telemetry data of <em>P. ater </em>and <em>H. australis </em>tracked with drones at Lucinda</li><li>Two spreadsheets with stable isotope values of stingrays, invertebrates, teleosts, and primary producers sampled at Lucinda.</li><li>A spreadsheet with capture locations and measurments of all stingrays captured at Lucinda</li><li>A spreadsheet with foraging observations and pit measurements from drone-tracked stingrays. </li></ul>
DOI: 10.4225/28/55a45055a0c12
title: Disrupted learning: habitat degradation impairs crucial antipredator responses in naive prey
DOI: 10.25903/vwtb-jh24
title: Microclimate data over two summers for urban roosts of Spectacled flying foxes

description: <p>This data set contains: 2 MS Excel (.csv.) of microclimate data collected for two summers (2021-22 and 2022-23) in urban roost of Spectacled flying foxes Cairns, QLD. This data was collected using a handheld meteorological station (Kestrel 3550) and comprehend ambient temperature (&deg;C), relative humidity(%), temperature humidity index (NRC), wet bulb temperature (&deg;C), temperature humidity index (YOUSEF), barometric pressure (mb), altitude (m), station pressure (mb), wind speed (km/h), heat index(&deg;C), dew point(&deg;C), compass magnetic direction(Deg), wind chill(&deg;C), delta t(&deg;C), time, GPS based location). It also contains a MS Excel (.csv.) containing air temperature values collected at the meteorologic station located at the Cairns Airport. The spreadsheet was achieved on the Bureau of Meteorology website and contains the maximum daily temperature registered since October, 22nd, 1942.</p>
DOI: 10.25903/zd2z-fz05
title: RCP8.5 future climate layers for Australia - 5km resolution

description: <p>Representative Concentration Pathways (RCPs) has been adopted by the IPCC to replace the Special Report on Emissions Scenarios (SRES) used in the AR4 report. The RCP 8.5 is characterized by increasing greenhouse gas emissions over time: rising radiative forcing pathway leading to 8.5 W/m2 in 2100. RCP8.5 bioclimatic variable spatial layers were developed for Australia (5km grid). Download 4GB zip file containing layers for 18 Global Circulation Models (GCMs) for decadal timesteps from 2015 to 2085.</p>
DOI: 10.25903/5df17da5f534f
title: Elevated CO2 affects anxiety but not a range of other behaviours in juvenile yellowtail kingfish

description: <p>This data set contains data collected by Megan J. Welch, Shannon J. McMahon, Tristan McArley, Bridie J.M. Allan, Sue-Ann Watson, Darren M. Parsons, Stephen M.J. Pether, Stephen Pope, Simon Nicol, Neville Smith, Neill Herbert & Philip L. Munday in 2017 investigating the effects of eleavted CO<sub>2</sub> and temperature on the behavioural responses of a large pelagic fish (Yellowtail Kingfish).</p><p> </p>
DOI: 10.4225/28/56bd6df7c9cb8
title: Dataset examining host feeding parameters of Anopheles farauti in Haleta village, Solomon Islands
DOI: 10.25903/nf07-tv26
title: The Origin of Mafic-Ultramafic Rocks and Felsic Plutons Along the Clarke River Suture Zone - implications for Porphyry Exploration in the Northern Tasmanides: Supplementary Data

description: <p>Supplementary Data record for publication manuscript titled "The Origin of Mafic-Ultramafic Rocks and Felsic Plutons Along the Clarke River Suture Zone - implications for Porphyry Exploration in the Northern Tasmanides"</p>
<p><strong>Abstract [Related publication]:</strong> The Clarke River Fault in northeast Queensland records an early Paleozoic history of subduction, accretion and continental suturing. Samples of mafic&ndash;ultramafic rocks collected proximal to the Clarke River Fault record oceanic geochemical affinities and comprise alteration assemblages consistent with an ophiolitic origin. The ca 456 Ma Falls Creek Tonalite records a continental-arc geochemical signature and was formed in response to long-lived subduction beneath the Thomson Orogen. Ordovician subduction beneath the Thomson Orogen is broadly coeval with arc magmatism documented in the Lachlan Orogen, which has been associated with the formation of several large porphyry ore deposits. The Falls Creek Tonalite yields adakite-like geochemical signatures that reflect a fertile melt source conducive to the formation of porphyry ore deposits. The outcropping plutons record ductile deformation consistent with mid-crustal depths, and they were emplaced during late syntectonic activity. This implies that the Falls Creek Tonalite was emplaced at too great a depth to have formed porphyry ore deposits. The northern Charters Towers Province shares many geological similarities to the Greenvale Province, where the erosional level may be shallower, and the potential for porphyry deposit formation and preservation may be greater.</p>
<p>This dataset consists of a MS Excel workbook (also saved in OpenDocument format) containing 6 datasheets:
<ul>
<li>Mafics Whole Rock Geochemistry</li>
<li>Whole Rock Geochemistry (major oxides and trace elements) of the Falls Creek Tonalite</li>
<li>Chromite Chemistry (anthophyllite schist) wt% Oxide; and Chromite Chemistry (anthophyllite schist) APFU</li>
<li>Chromite Mapping 1 (embedded images)</li>
<li>Chromite Mapping 2 (embedded images)</li>
<li>Amphibole chemistry (hornblendite) wt% oxide; and Amphibole chemistry (hornblendite) APFU</li>
</ul></p>
<p>The full methodology is available in the Open Access publication from the Related publications link below.</p>
<p>Software/equipment used to create/collect the data: EPMA, LA-ICP-MS, SEM</p>
<p>Software/equipment used to manipulate/analyse the data: Iolite 4, ioGAS.</p>
DOI: 10.25903/5d04389042aca
title: Structural habitat composition of Alligator Creek (Townsville, QLD)

description: <p>Dataset for the structural habitat composition of the estuarine section of Alligator Creek (Townsville, QLD) mapped in the period 2016-2018.</p><p>A "structural habitat" is defined as the combination of one or more of the different structural classes belonging to the structural attributes ‘substratum’, ‘vegetation’, and ‘artificial features’. </p><p>The dataset includes the following layer groups:</p><p>- Map of the extent and distribution of the 18 structural habitat types identified in Alligator Creek: AlligatorCreek_StructuralHabitats_Full_List.rar</p><p>- Maps of the extent and distribution of natural habitats (NAT) and habitats characterised by the presence of one or more artificial modifications (MOD): AlligatorCreek_StructuralHabitats_NAT-MOD.rar</p><p>- Maps of the extent and distribution of the structural attribute 'Sediment', divided in five classes: mud (MUD), sand (SAN), gravel (GRV), boulder (BLD) and pavement (PAV): AlligatorCreek_StructuralLayer_Sediment.rar</p><p>- Maps of the extent and distribution of the structural attribute 'Vegetation', divided in two classes: mangrove (MG) and saltmarsh (SM): AlligatorCreek_StructuralLayer_Vegetation.rar</p><p>- Maps of the extent and distribution of the structural attribute 'Artificial feature', divided in three classes: armouring (A) and raised structure (R): AlligatorCreek_StructuralLayer_Artificial_Features.rar</p>
DOI: 10.25903/5d01d448c3756
title: Developmental effects of heatwave conditions on the early life stages of a coral reef fish

description: <p>This dataset is of traits measured from ~600 juvenile coral reef damselfish (species: <em>Acanthochromis polyacanthus</em>) after differing lengths of exposure from hatching to heatwave conditions. The traits measured were escape performance, standard length, weight, crititcal thermal maximum, and sex.</p><p>Clarifying some of the column headers in the dataset:</p><p>Fish: unique fish ID</p><p>UqRep: unique fish tank ID</p><p>Treatment: C = 108 days exposure to control temperatures post hatching and 3d = 3 days, 7d = 7 days, 30d = 30 days, H = 108 days exposure to +2C post hatching</p><p>Family: four different family lines</p><p>TestingT: performance/testing temperature of escape response trials in Celsius</p><p>W: wet weight in g</p><p>SL: standard length in mm</p><p>StartT: starting temperature for critical thermal maximum trials in Celsius</p><p>CTM: critical thermal maximum in Celsius</p><p>The rest of the columns pertain to the escape performance traits.</p><p>Video: unique escape performance trial ID</p><p>Stimdist: distance from stimulus on impact in mm</p><p>Stimdirect: orientation from stimulus on impact in degrees</p><p>StimdirectR: orientation from stimulus on impact in radian</p><p>LatencyMS: time from stimulus impact until response in milliseconds</p><p>DuratMS: duration of C-start escape response in milliseconds</p><p>Dist: distance travelled of C-start escape response in mm</p><p>VeloMS: mean speed of C-start escape response in m s<sup>-1</sup></p><p>MaxVeloMS: maximum speed of C-start escape response in m s<sup>-1</sup></p><p>EndDirect: direction after C-start escape response in degrees</p><p>EndDirectR: direction after C-start escape response in radian</p>