cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8190493
title: Integrating Visual Aids to Enhance the Code Reviewer Selection Process Replication Package

description: Modern Code Review (MCR) is an integral part of a software development strategy that accelerates product quality by identifying defects, code smells, and other harmful practices. However, assigning appropriate reviewers to evaluate changed code during the review process remains challenging. While automated tools for reviewer assignments have limited impact in practice, the process often relies on manual investigation of project histories to retrieve knowledge of team members and their activities. Therefore, in this study, we present an approach to automatically assemble developers' information and visualize it meaningfully, which helps to choose appropriate reviewers. First, we propose three metrics that measure developers' collaboration, reviewers' expertise, and reviewers' workload and visualize them through networks. Second, we perform a case study of three popular open-source projects, where we compute and visualize each developers' information according to the proposed metrics. Finally, we conducted two online surveys to assess the developers' perceptions of the proposed visual benefits. The results show that the proposed method can assist in identifying relevant reviewers and be immensely helpful to new developers. Additionally, survey respondents expressed reliance on the efficacy of the visual aids in workload balancing and reducing review time.
DOI: 10.34740/kaggle/dsv/6206106
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.23796025
title: Intergenerational effects of early life-stage temperature modulation on gene expression and DNA methylation in Atlantic cod (<i>Gadus morhua</i>)

description: After suffering several collapses, the cod farming industry is now in the process of trying to re-establish itself. We have used material from Norway’s National Cod Breeding Program to study how different early life-stage temperature regimes affect DNA methylation and gene expression. Long-term effects were detected by sampling fish several weeks after the end of differential treatments, and offspring from the different exposure groups was also sampled. Many overlapping genes were found between the different exposure groups and generations, coupled with genes associated with differential CpG methylation levels. Genes involved in muscle fibre development, general metabolic processes and formation of deformities were significantly affected, and genes relevant for intergenerational transfer of epigenetic marks were also detected. We believe the use of environmental cues can be a useful strategy for improving the production of Atlantic cod.
DOI: 10.6084/m9.figshare.23796025.v1
title: Intergenerational effects of early life-stage temperature modulation on gene expression and DNA methylation in Atlantic cod (<i>Gadus morhua</i>)

description: After suffering several collapses, the cod farming industry is now in the process of trying to re-establish itself. We have used material from Norway’s National Cod Breeding Program to study how different early life-stage temperature regimes affect DNA methylation and gene expression. Long-term effects were detected by sampling fish several weeks after the end of differential treatments, and offspring from the different exposure groups was also sampled. Many overlapping genes were found between the different exposure groups and generations, coupled with genes associated with differential CpG methylation levels. Genes involved in muscle fibre development, general metabolic processes and formation of deformities were significantly affected, and genes relevant for intergenerational transfer of epigenetic marks were also detected. We believe the use of environmental cues can be a useful strategy for improving the production of Atlantic cod.
DOI: 10.6084/m9.figshare.23657679.v2
title: Supplementary material paper E. coli CEC15

description: Supplementary tables and supplementary figures to the paper "Comprehensive probiogenomics analysis of the commensal <em>Escherichia coli</em> CEC15 as a potential probiotic strain"
DOI: 10.15468/dl.3es6tm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "and" : [ "ScientificName is Trochalopteron cachinnans jerdoni (Blyth, 1851)", "BasisOfRecord is one of (Machine Observation, Human Observation)", "Year 2011-2021", "HasCoordinate is true", "OccurrenceStatus is Present", { "not" : { "BasisOfRecord" : [ "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)" ] } } ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.13140/rg.2.2.15039.07849
title: Dr Sandhya Tiwari Certificate - Chair
DOI: 10.13140/rg.2.2.28460.85120
title: Dr Sandhya Tiwari Certificate - Chair
DOI: 10.5281/zenodo.8186916
title: TCGA Bladder Urothelial Carcinoma (BLCA) Gene Expression

description: <strong>Abstract</strong>: The Cancer Genome Atlas (TCGA) was a large-scale collaborative project initiated by the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI). It aimed to comprehensively characterize the genomic and molecular landscape of various cancer types. This dataset's gene expression profile was measured experimentally using the Illumina HiSeq 2000 RNA Sequencing platform by the University of North Carolina TCGA genome characterization center. The Sample IDs serve as unique identifiers for each sample. The dataset contains information about 426 samples and 20530 genes. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Instruction:</strong> The log<sub>2</sub>(x+1) normalization was removed, and z-normalization was performed on the dataset using a Python script. <strong>Acknowledgments:</strong> Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8 The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764 <strong>U-BRITE last update: </strong>07/13/2023
description: U-BRITE location: /data/project/ubrite/gtkb/TCGA/GeneExp
description: {"references": ["Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8", "The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113\u20131120 (2013). https://doi.org/10.1038/ng.2764"]}
DOI: 10.5281/zenodo.8186915
title: TCGA Bladder Urothelial Carcinoma (BLCA) Gene Expression

description: <strong>Abstract</strong>: The Cancer Genome Atlas (TCGA) was a large-scale collaborative project initiated by the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI). It aimed to comprehensively characterize the genomic and molecular landscape of various cancer types. This dataset's gene expression profile was measured experimentally using the Illumina HiSeq 2000 RNA Sequencing platform by the University of North Carolina TCGA genome characterization center. The Sample IDs serve as unique identifiers for each sample. The dataset contains information about 426 samples and 20530 genes. <strong>Inspiration:</strong> This dataset was uploaded to UBRITE for GTKB project. <strong>Instruction:</strong> The log<sub>2</sub>(x+1) normalization was removed, and z-normalization was performed on the dataset using a Python script. <strong>Acknowledgments:</strong> Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8 The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764 <strong>U-BRITE last update: </strong>07/13/2023
description: U-BRITE location: /data/project/ubrite/gtkb/TCGA/GeneExp
description: {"references": ["Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8", "The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113\u20131120 (2013). https://doi.org/10.1038/ng.2764"]}
DOI: 10.5517/ccdc.csd.cc2fpwpq
title: CCDC 2255364: Experimental Crystal Structure Determination

description: Related Article: Sourav Biswas, Sakiat Hossian, Taiga Kosaka, Jin Sakai, Daichi Arima, Yoshiki Niihori, Masaaki Mitsui, De-en Jiang, Saikat Das, Song Wang, Yuichi Negishi|2023|Chem.Commun.|59|9336|doi:10.1039/D3CC01811C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.sksnxn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "and" : [ "ScientificName is Tangara cayana flava (J.F.Gmelin, 1789)", "BasisOfRecord is one of (Machine Observation, Human Observation)", "Year 2011-2021", "HasCoordinate is true", "OccurrenceStatus is Present", { "not" : { "BasisOfRecord" : [ "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)" ] } } ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.15468/dl.n43p92
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "and" : [ "ScientificName is Hyloctistes subulatus virgatus (Lawrence, 1867)", "BasisOfRecord is one of (Machine Observation, Human Observation)", "Year 2011-2021", "HasCoordinate is true", "OccurrenceStatus is Present", { "not" : { "BasisOfRecord" : [ "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)" ] } } ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.25345/c5p844629
title: MassIVE MSV000092542 - Subtiligase N-terminomics for identification of cleavage sites in mice brain and immunoprecipitated PrP
title: Subtiligase-based N-terminomics (Abu N-terminal tagging) of whole mouse brain and immunoprecipitated prion protein. Mouse expressing either WT or mutant (S3) form of PrP were used in this study. Five replicates for single brain experiments and one replicate for combined brains approach are included. For labeling of PrP, 2 biological replicates are part of the study.
DOI: 10.5281/zenodo.7799856
title: Problem-solving skills are predicted by innovations in the wild and brain size in Passerines

description: Dataset (tab-separated values text file) and R code (R script) for article: "Problem-solving skills are predicted by innovations in the wild and brain size in Passerines"
DOI: 10.5281/zenodo.8121274
title: Problem-solving skills are predicted by innovations in the wild and brain size in Passerines

description: Dataset (tab-separated values text file) and R code (R script) for article: "Problem-solving skills are predicted by innovations in the wild and brain size in Passerines"
DOI: 10.5281/zenodo.8170327
title: Problem-solving skills are predicted by innovations in the wild and brain size in Passerines

description: Dataset (tab-separated values text file) and R code (R script) for article: "Problem-solving skills are predicted by innovations in the wild and brain size in Passerines"
DOI: 10.15468/dl.mt4hvb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "and" : [ "ScientificName is Aratinga wagleri frontata (Cabanis, 1846)", "BasisOfRecord is one of (Machine Observation, Human Observation)", "Year 2011-2021", "HasCoordinate is true", "OccurrenceStatus is Present", { "not" : { "BasisOfRecord" : [ "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)" ] } } ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.5281/zenodo.8170337
title: Problem-solving skills are predicted by innovations in the wild and brain size in Passerines

description: Dataset (tab-separated values text file) and R code (R script) for article: "Problem-solving skills are predicted by innovations in the wild and brain size in Passerines"
DOI: 10.5281/zenodo.7799855
title: Problem-solving skills are predicted by innovations in the wild and brain size in Passerines

description: Dataset (tab-separated values text file) and R code (R script) for article: "Problem-solving skills are predicted by innovations in the wild and brain size in Passerines"
DOI: 10.5063/f1416vhc
title: Limpkins and Non Native Molluscs

description: These files constitute the data necessary to replicate analyses performed in Frazier and Snider 2023, including limpkin and non-native mollusc observations in various formats downloaded from GBIF.
DOI: 10.5281/zenodo.6481191
title: Datasets 'Microbiota acquisition and transmission in Drosophila flies'

description: Datasets of 'Microbiota acquisition and transmission in <em>Drosophila </em>flies'
DOI: 10.6084/m9.figshare.23796045
title: Hypertension_dataset.sav

description: Dataset of hypertension in Ethiopia.
DOI: 10.5281/zenodo.6481190
title: Datasets 'Microbiota acquisition and transmission in Drosophila flies'

description: Datasets of 'Microbiota acquisition and transmission in <em>Drosophila </em>flies'
DOI: 10.6084/m9.figshare.23796114
title: Learning Management Systems Success Data.xlsx

description: The data set includes survey answers collected in research about Learning Management Systems' success. The data was collected from students of an engineering college.
DOI: 10.25345/c5jh3dc8j
title: MassIVE MSV000092543 - N-terminal acetylation for identification of cleavage sites on immunoprecipitated PrP
title: In-gel N-terminal acetylation of immunoprecipitated prion protein for identification of cleavage sites. Mouse expressing either WT or mutant (S3) form of PrP were used in this study. Three replicates from single brains were included in this experiment.
DOI: 10.6084/m9.figshare.23796138
title: Towards Understanding Emotions in Informal Developer Interactions: A Gitter Chat Study

description: A dataset of developer Gitter chat messages annotated with corresponding emotions, sentiments, and topics.
DOI: 10.25345/c5dr2pk5w
title: MassIVE MSV000092544 - Characterization of Fluid Shear Stress Exposure on Breast Cancer Cells from a Multiomics Perspective
title: In the clinic, metastatic breast cancer often responds differently to treatment than primary disease. Cancer cells experience numerous stimuli and stresses throughout the process of metastasis; one of the largest mechanical stimuli felt by the cells occurs during the circulation step of the metastatic cascade. The circulation component of the metastatic cascade may play an important role in the change of behavior seen in metastatic breast cancer; however, this has yet to be studied. The fluid shear stress (FSS) experienced by circulating tumor cells (CTCs) while flowing through the vasculature seeks to deform the cell. To investigate the effects of FSS on breast cancer molecular biology, three hormone receptor-positive (HR+) breast cancer cell lines were tested. Evaluation included multiomics analysis, proteomic and transcriptomic, of MCF-7 breast cancer cells exposed to a physiologically relevant magnitude of FSS followed by western blot and qRT-PCR confirmation. Proteomic results demonstrated 540 total proteins and 1473 phosphoproteins significantly changed by FSS. Further pathway analysis suggested global changes in growth factor mediated pathways, including pathways with direct crosstalk with hormone receptor expression. Specific targets of interest such as phosphorylation of AKT, AKT1S1, and mTOR were evaluated with western blotting. Next-generation RNA sequencing was also performed identifying 241 and 124 significantly upregulated and downregulated genes, respectively. A downregulation in estrogen receptor (ER) mediated gene expression was found during post-sequencing data analysis. qRT-PCR for ER, progesterone receptor (PR), stromal cell-derived factor 1 (SDF1) was performed to determine alterations in ER and ER-related relative gene transcription. In vitro endocrine therapy assays were also performed to evaluate post-shear cellular response to Tamoxifen and Fulvestrant. After evaluating short-term changes in cell phenotype, long-term shear and culture experiments were conducted to elucidate persistent changes in cellular biochemistry. Results showed that phosphorylation of mTOR and AKT1S1 are increased and transcription of ER, PR and SDF1 were decreased in HR+ breast cancer cells after being exposed to FSS. This work highlights that exposing HR+ breast cancer cells to a physiologically relevant magnitude of FSS experienced in the human vasculature leads to both short- and long-term activation of mTOR and repression of HR.
DOI: 10.5066/p93ihond
title: Cover, density, and biomass data from Sandberg bluegrass (Poa secunda) restoration treatments

description: The dataset includes several measurements collected for two complementary phases of a Sandberg bluegrass restoration project. In the first phase of the project, percentage of vegetation and soil surface cover (e.g. soil, rock) were measured within each of 20 treatment plots (described in the following section) using the Line Point Intercept (LPI) method (Herrick et al. 2005) from 2019-2021. Sandberg bluegrass density was also measured by counting individual plants within 0.5 x 0.5 meter quadrats systematically placed along the transects. Herbaceous biomass was destructively harvested within 0.5 x 0.5 m quadrats that were also systematically placed (at different meter marks than density quadrats) along the transects. Biomass was oven dried and weighed in the USGS Snake River Field Station Laboratory in Boise, Idaho. In Phase II of the project, we sampled cover, density, and biomass characteristics using the same techniques described for Phase I. Phase II had different treatments, with 42 total plots that were sampled 2021-2022. Herrick, J.E., Van Zee, J.W., Havsad, K.M., Burkett, M., and Whitford, W.G. 2005. Monitoring manual for grassland, shrubland, and savanna ecosystems. Volume 1: Quick Start. USDA - ARS Jornada Experimental Range; Distributed by the University of Arizona Press, Las Cruces, N.M.
DOI: 10.15468/dl.pshjmz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Scilla uyuiensis Rendle." ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.25345/c5901zs12
title: MassIVE MSV000092545 - Proteomic changes in mouse brain expressing WT and mutant (S3) alleles of the prion protein
title: Label-free quantification of proteomic changes in mouse expressing WT, mutant (S3) prion protein, and PrP-KO mouse. Three biological replicates were included per condition. In-gel digestion of the proteins extracted from brain generated 6 fractions per replicate.
DOI: 10.25345/c55717z5q
title: MassIVE MSV000092546 - Germ granule association drives small RNA specificity for a nuclear Argonaute protein
title: RNA interference (RNAi) is a conserved gene silencing process that exists in diverse organisms to protect genome integrity and regulate gene expression. In C. elegans, the majority of RNAi pathway proteins localize to perinuclear, phase-separated germ granules, which are comprised of sub-domains referred to as P granules, Mutator foci, Z granules, and SIMR foci. However, the protein components and function of the newly discovered SIMR foci are unknown. Here we demonstrate that HRDE-2 localizes to SIMR foci and interacts with the germline nuclear RNAi Argonaute HRDE-1. Furthermore, HRDE-1 also localizes to SIMR foci, dependent on HRDE-2, but only in its small RNA unbound state. This germ granule localization is critical to promote the small RNA binding specificity of HRDE-1 and, in the absence of HRDE-2, HRDE-1 exclusively loads CSR-class 22G-RNAs rather than WAGO-class 22G-RNAs, resulting in H3K9me3 deposition on CSR-target genes. Thus, our study demonstrates that HRDE-2 is critical to ensure that the correct small RNAs are used to guide nuclear RNA silencing in the C. elegans germline.
DOI: 10.6084/m9.figshare.23796264
title: List of references_English

description: List of references analyzed in the systematic review of literature on opportunities and positive use of ICT among minors, grouped into thematic areas.
DOI: 10.6084/m9.figshare.23796264.v1
title: List of references_English

description: List of references analyzed in the systematic review of literature on opportunities and positive use of ICT among minors, grouped into thematic areas.
DOI: 10.17909/fh6c-yw51
title: TESS asteroseismic targets

description: TESS target pixel files were used for an asteroseismic detection in lambda Serpentis and for asteroseismic non-detections in nine other targets.
DOI: 10.15468/dl.uhvcu4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Scindapsus javanicus Alderw." ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.17909/ar5x-2g05
title: TESS asteroseismic targets

description: TESS target pixel files were used for an asteroseismic detection in lambda Serpentis and for asteroseismic non-detections in nine other targets.
DOI: 10.21227/3br2-7315
title: Road recognition image

description: This data set contains four types of road images: asphalt roads and gravel roads; Wading roads and snowy roads. It is mainly used to train road recognition models. Due to the large amount of data, this data set only contains some images. If you feel it is useful for your research, please email wangzhangu1@163.com to get the complete data set.This data set contains four types of road images: asphalt roads and gravel roads; Wading roads and snowy roads. It is mainly used to train road recognition models. Due to the large amount of data, this data set only contains some images. If you feel it is useful for your research, please email wangzhangu1@163.com to get the complete data set.
DOI: 10.5281/zenodo.8069922
title: Data From: Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity

description: Data From: Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity
DOI: 10.5281/zenodo.8069921
title: Data From: Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity

description: Data From: Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity
DOI: 10.15468/dl.ea3f2b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Scindapsus sumatranus (Schott) P.C.Boyce & A.Hay" ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.26093/cds/vizier.51620197
title: Photometry, rotation and Li in open cluster NCG2516

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Rotation and lithium confirmation of a 500pc halo for the open cluster NGC 2516.' (bibcode: 2021AJ....162..197B)
DOI: 10.26093/cds/vizier.51620094
title: Cataclysmic variables in ZTF 2nd year

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Cataclysmic variables in the second year of the Zwicky Transient Facility.' (bibcode: 2021AJ....162...94S)