cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5b0s8/7
title: Cyphomyrmex monoculture infections

description: Cyphomyrmex garden monocultures infected with Escovopsis strains
DOI: 10.5061/dryad.5b0s8/8
title: Cyphomyrmex bioassays

description: Bioassays infecting C. longiscapus, C. muelleri, and C. costatus cultivars with C. muelleri and C.longiscapus Escovopsis
DOI: 10.5061/dryad.5b0s8/9
title: Cyphomyrmex Escovopsis genetic distances
DOI: 10.5061/dryad.69qj0/1
title: Data IGP

description: collected in the field; software used to create the data
DOI: 10.5061/dryad.bq8j8/1
title: Lab experiment data
DOI: 10.5061/dryad.bq8j8/2
title: Field experiment data
DOI: 10.5061/dryad.f862c/105
title: M798E0 Ctrl RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/106
title: M798E0 Ctrl WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/107
title: M798E0 C3D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/108
title: M798E0 C4D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/109
title: M798E0 mIgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/110
title: M798E0 RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/111
title: M798E0 WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.hr069/10
title: 20th dec fish 11 hypoxia
DOI: 10.5061/dryad.hr069/2
title: 17th dec fish 3 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/3
title: 18th dec fish 4 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/4
title: 18th dec fish 5 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/5
title: 19th dec fish 6 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/6
title: 19th dec fish 7 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/7
title: 19th dec fish 8 hypoxia

description: continuous time series data for cardiac contraction recorded using World Precision Instruments software DataTrax
DOI: 10.5061/dryad.hr069/8
title: 20th dec fish 9 hypoxia
DOI: 10.5061/dryad.nn8pj/10
title: Proximate Torrefied

description: TGA proximate analysis of torrefied pellet
DOI: 10.5061/dryad.nn8pj/11
title: PSI

description: Random Pore Model, torrefied pellet
DOI: 10.5061/dryad.nn8pj/12
title: Reactivity

description: CO2 gasification reactivity for torrefied pellet
DOI: 10.5061/dryad.nn8pj/13
title: Wood Chip Moisture and bulk density

description: Downdraft gasifier feedstock characteristics
DOI: 10.5061/dryad.nn8pj/5
title: Grindability Torrefied Pellet

description: Torrefied pellet characterisation
DOI: 10.5061/dryad.nn8pj/6
title: Kinetics Corsican Pine

description: CO2 gasification reaction kinetics from TGA for Corsican Pine.
DOI: 10.5061/dryad.nn8pj/7
title: Kinetics_European Larch

description: CO2 gasification reaction kinetics from TGA for European Larch.
DOI: 10.5061/dryad.nn8pj/8
title: Kinetics_LTM Torrefied

description: CO2 gasification reaction kinetics from TGA for torrefied pellet.
DOI: 10.5061/dryad.nn8pj/9
title: Kinetics_Silver Birch

description: CO2 gasification reaction kinetics from TGA for Silver Birch.
DOI: 10.5061/dryad.p0g4v/1
title: Critical thermal minimum (CTmin) of threespine stickleback

description: Laboratory determined critical thermal minimum (CTmin). Fish are lab reared crosses of fish from Paxton Lake (Lake) and Oyster Lagoon (Marine), British Columbia and their hybrids (Hybrid).
DOI: 10.5061/dryad.p0g4v/2
title: Mortality data for laboratory reared threespine stickleback

description: Ecotypes are fish from Oyster Lagoon (M), Paxton Lake (F), and their hybrids (H). Temp = rearing temperature (degrees C). Total Fish = starting number of fish from a given family in a specific tank. Mortalities = total number of fish that died from a given family in a specific tank over the course of the full experiment.
DOI: 10.5061/dryad.p0g4v/3
title: Plasma chloride concentration of laboratory reared threespine stickleback

description: Threespine stickleback were reared at a salinity of 2 ppt at either 4 or 14 degrees C. Ecotypes used were from Oyster Lagoon (M), Paxton Lake (L), and their hybrids (H). Plasma chloride (Cl-) concentration is reported in mM.
DOI: 10.5061/dryad.p0g4v/4
title: mRNA levels for ion transporters in the gills of laboratory reared threespine stickleback

description: mRNA levels were measured using qRT-PCR in threespine stickleback from Oyster Lagoon (Marine), Paxton Lake (Lake), and their hybrids (Hybrid). The following genes were assessed: sodium hydrogen exchanger isoform 2 (NHE2), sodium hydrogen exchanger isoform 3 (NHE3), epithelial calcium channel (ECaC), V-Type ATPase isoform 1 (V Type 1), V-Type ATPase isoform 2 (V Type 2), and the sodium-potassium ATPase alpha subunit, variant 203 (NKA 203). Expression is normalized to the geometric mean of three control genes.
DOI: 10.5061/dryad.pr078/1
title: candidate.maf.005_map

description: plink map file for Bayescan, Arlequin and Bayenv - candidate dataset
DOI: 10.15468/dl.htf2dr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dypsis ovobontsira Beentje)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086711-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2yq5gf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Ancistrocerus scoticus (Wesm.)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086712-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hb6bt
title: Occurrence Download

description: A dataset containing 13512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulmus parvifolia Jacq."
 ]
}

 The dataset includes 13512 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086713-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9m3mt
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086714-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umbqhm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dypsis sahanofensis (Jum. & H.Perrier) Beentje & J.Dransf.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086715-240626123714530/datasets/export for details.
DOI: 10.15468/dl.dwaaqm
title: Occurrence Download

description: A dataset containing 2309 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Ancistrocerus oviventris (Wesmael, 1836)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2309 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086716-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz7ajb
title: Occurrence Download

description: A dataset containing 2876972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alismatales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 2876972 records from 3452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086689-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/24060978
title: Real-time fMRI neurofeedback on smokers

description: Data acquired during real-time fMRI experiment on smokersIn previous real-time functional magnetic resonance imaging neurofeedback (rtfMRI-NF) studies on smoking craving, the focus has been on within-region activity or between-region connectivity, neglecting the potential predictive utility of broader network activity. Moreover, there is debate over the use and relative predictive power of individual-specific and group-level classifiers. This study aims to further advance rtfMRI-NF for substance use disorders by using whole-brain rtfMRI-NF to assess smoking craving-related brain patterns, evaluate the performance of group-level or individual-level classification (n = 31), and evaluate the performance of an optimized classifier across repeated neurofeedback runs. Using real-time individual-level classifiers derived from whole-brain support vector machines, we found that classification accuracy between crave and no-crave conditions and between repeated neurofeedback runs increased across repeated runs at both individual and group levels. Within the classification, individual-level accuracy was significantly greater than group-level accuracy, highlighting the potential increased utility of an individually-trained whole-brain classifier for volitional control over brain patterns to regulate smoking craving. This study provides evidence supporting the feasibility of using whole-brain rtfMRI-NF to modulate smoking craving-related brain responses and the potential for learning individual strategies through optimization across repeated feedback runs.
DOI: 10.7294/24060978.v1
title: Real-time fMRI neurofeedback on smokers

description: Data acquired during real-time fMRI experiment on smokersIn previous real-time functional magnetic resonance imaging neurofeedback (rtfMRI-NF) studies on smoking craving, the focus has been on within-region activity or between-region connectivity, neglecting the potential predictive utility of broader network activity. Moreover, there is debate over the use and relative predictive power of individual-specific and group-level classifiers. This study aims to further advance rtfMRI-NF for substance use disorders by using whole-brain rtfMRI-NF to assess smoking craving-related brain patterns, evaluate the performance of group-level or individual-level classification (n = 31), and evaluate the performance of an optimized classifier across repeated neurofeedback runs. Using real-time individual-level classifiers derived from whole-brain support vector machines, we found that classification accuracy between crave and no-crave conditions and between repeated neurofeedback runs increased across repeated runs at both individual and group levels. Within the classification, individual-level accuracy was significantly greater than group-level accuracy, highlighting the potential increased utility of an individually-trained whole-brain classifier for volitional control over brain patterns to regulate smoking craving. This study provides evidence supporting the feasibility of using whole-brain rtfMRI-NF to modulate smoking craving-related brain responses and the potential for learning individual strategies through optimization across repeated feedback runs.
DOI: 10.25345/c5g15tn7x
title: MassIVE MSV000094015 - NIOZ DOM analysis - Resilience Project 2022
title: DOM analysis of coral reef & coastal water metabolites at NIOZ Texel
DOI: 10.5281/zenodo.7963896
title: Base de datos de revisión de literatura sobre estudios de recepción en salud y salud mental

description: La presente base de datos es un instrumento que se usó para almacenar los artículos encontrados sobre recepción y salud en un contexto de digitalización y uso de las TIC, con los siguientes criterios de clasificación: año de publicación, país del banco de datos, revista o congreso, tipo de documento, país en donde se realizó el estudio, eje temático, referencia bibliográfica, objetivo del estudio, metodología, teoría, resultados y enlace para acceder al artículo.

Los resultados forman parte de una revisión de literatura que ha sido utilizada para definir un proyecto de tesis doctoral acerca de las juventudes mexicanas y recursos digitales sobre depresión y ansiedad en sus prácticas de salud mental.
DOI: 10.5281/zenodo.7963897
title: Base de datos de revisión de literatura sobre estudios de recepción en salud y salud mental

description: La presente base de datos es un instrumento que se usó para almacenar los artículos encontrados sobre recepción y salud en un contexto de digitalización y uso de las TIC, con los siguientes criterios de clasificación: año de publicación, país del banco de datos, revista o congreso, tipo de documento, país en donde se realizó el estudio, eje temático, referencia bibliográfica, objetivo del estudio, metodología, teoría, resultados y enlace para acceder al artículo.

Los resultados forman parte de una revisión de literatura que ha sido utilizada para definir un proyecto de tesis doctoral acerca de las juventudes mexicanas y recursos digitales sobre depresión y ansiedad en sus prácticas de salud mental.
DOI: 10.34740/kaggle/dsv/7564685
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.25345/c5bc3t770
title: MassIVE MSV000094016 - XLMS Analysis of the proteins affinity-purified from HEK293T cells stably expressing Halo-FAM60A or Halo-SAP30L and crosslinked with DSSO
title: Protein crosslinking | Briefly, cell lysates expressing Halo-Fam60A were mixed with Magne HaloTag Beads, using 100 ul of bead slurry, and incubated overnight at 4C. The beads were then separated with a magnetic concentrator and washed four times using a buffer composed of 10 mM HEPES (pH 7.5), 1.5 mM MgCl2, 0.3 M NaCl, 10 mM KCl, and 0.2% Triton X-100. To elute bound proteins, the beads were treated with 200 ul of a buffer containing 50 mM HEPES (pH 7.5), 0.5 mM EDTA, 1 mM DTT, and 30 units of AcTEV, and incubated for a minimum of 2 h at 4C. The eluate was collected, and proteins were cross-linked using 5 mM disuccinimidylsulfoxide (DSSO; Sigma-Aldrich) for 40 minutes at room temperature. The cross-linking process was quenched by adding 50 mM NH4HCO3 and incubating for 15 minutes at room temperature. LC-MS3 XLMS data acquisition | Crosslinked peptides were analyzed on an Orbitrap Fusion Lumos mass spectrometer (Thermo Fisher Scientific) coupled to a Dionex UltiMate 3000 RSCLnano System. Peptides were loaded on an Acclaim PepMap 100 C18 0.3-mm-i.d., 5-mm-long trap cartridge (Thermo Fisher Scientific), then eluted to an analytical column (50 um i.d., 150 mm long) packed in-house with ReproSil-Pur C18-AQ 1.9-um resin (Dr. Masch GmbH). Full MS scans were performed at 60,000-m/z resolution in the orbitrap with a 1.6-m/z isolation window and a scan range from 375 to 1,500 m/z. The top three peptides with charge states from +4 to +8 were selected for MS2 fragmentation with 20% CID energy. MS2 scans were detected in the Orbitrap with 30,000-m/z resolution and a dynamic exclusion time of 40 s. Among MS2 fragments, if two peptides with an exact mass difference of 31.9720 with 20 ppm mass tolerance were present, both were selected for MS3 fragmentation at CID energy of 35%. MS3 scans were performed in the ion trap at rapid scan with an isolation window of 3 m/z and a maximum ion injection time of 200 ms. Each MS2 scan was followed by four MS3 scans. XLMS data analysis | The XlinkX node of Proteome Discoverer 3.0 (Thermo Fisher Scientific) was used to search for crosslinked peptides in the XLMS dataset by identifying MS2 scans with reporter ions characteristic of DSSO-modified lysine residues, with mass shifts of 158.00376 Da (monoisotopic mass), 54.01056 Da (alkene fragment), and 85.98264 Da (thiol fragment). In addition, the Sequest HT node searched the dataset with the following settings: 10 ppm precursor ion mass tolerance; 0.6 Da fragment ion mass tolerance; fixed modification: Cys carbamidomethylation; variable modifications: Met oxidation, N-terminal acetylation, Lys with amidated DSSO (279.07766 Da), and Lys with hydrolyzed DSSO (176.01433 Da); 3 maximum number of dynamic modifications. The data was searched against a non-redundant protein sequence database assembled from NCBI RefSeq GRCh38.p14 and T2T-CHM13v2.0 (2022-04-12 release), complemented with 428 common contaminants. The protein false discovery rate was set at 0.01.
DOI: 10.34740/kaggle/dsv/7564693
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.5281/zenodo.10451686
title: Classical Molecular Dynamics at 50°C of HIV-1 Envelope gp120 from a transmitted founder virus of the CH505 isolate

description: A total of 250, 5-μs trajectories were run for closed gp120 at 50°C. The Amber22 software package with pmemd CUDA implementation in the CHARMM36 force field and TIP3P water model was used for simulations. A 150-Å octahedral box was used to allow for V1/V2 and V3 dislocation during simulation. Both systems were neutralized with 150 mM NaCl. Ten thousand steps of energy minimization were performed with 1000 steps of steepest descent minimization with restraints (500 kcal/mol·Å) on protein. A second unrestrained energy minimization consisting of 10,000 steps and 1000 steepest descent steps followed. Minimization was followed by 20 ps of NVT heating with restraints (10 kcal/mol·Å) applied to protein atoms and a subsequent 5 ns of NPT equilibration with no restraints, with a constant temperature of 323.15 K maintained using a Langevin thermostat (96), and pressure of 1 atm was maintained with isotropic position scaling. Two hundred fifty nanoseconds of unrestrained simulations in the NVT ensemble was performed to equilibrate the system, followed by 5 μs of production simulation in the NVT ensemble. Electrostatic interactions were calculated with the Particle Mesh Ewald method (97) with a cutoff of 12 Å and switching distance of 10 Å. The SHAKE algorithm (98) with hydrogen mass repartitioning (99) was used to constrain hydrogen atoms and allow for a 4-fs time step.
DOI: 10.5281/zenodo.10451687
title: Classical Molecular Dynamics at 50°C of HIV-1 Envelope gp120 from a transmitted founder virus of the CH505 isolate

description: A total of 250, 5-μs trajectories were run for closed gp120 at 50°C. The Amber22 software package with pmemd CUDA implementation in the CHARMM36 force field and TIP3P water model was used for simulations. A 150-Å octahedral box was used to allow for V1/V2 and V3 dislocation during simulation. Both systems were neutralized with 150 mM NaCl. Ten thousand steps of energy minimization were performed with 1000 steps of steepest descent minimization with restraints (500 kcal/mol·Å) on protein. A second unrestrained energy minimization consisting of 10,000 steps and 1000 steepest descent steps followed. Minimization was followed by 20 ps of NVT heating with restraints (10 kcal/mol·Å) applied to protein atoms and a subsequent 5 ns of NPT equilibration with no restraints, with a constant temperature of 323.15 K maintained using a Langevin thermostat (96), and pressure of 1 atm was maintained with isotropic position scaling. Two hundred fifty nanoseconds of unrestrained simulations in the NVT ensemble was performed to equilibrate the system, followed by 5 μs of production simulation in the NVT ensemble. Electrostatic interactions were calculated with the Particle Mesh Ewald method (97) with a cutoff of 12 Å and switching distance of 10 Å. The SHAKE algorithm (98) with hydrogen mass repartitioning (99) was used to constrain hydrogen atoms and allow for a 4-fs time step.
DOI: 10.13012/b2idb-9223847_v1
title: Manipulating social information to promote frugivory by birds on a Hawaiian Island