cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pgzc9f6kn6.2
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: ESTIMATED HEMODYNAMICS

description: Data and results for `ESTIMATED HEMODYNAMICS` simulations. Simulations of cancerous cells in colony and tissue contexts with estimated hemodynamics varying different hemodynamic factors (concentration gradient, local consumption, and upstream flow) with weights from 0 to 20 in increments of 1. Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[factor]_[weight] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [factor] - weight_gradient = concentration gradient factor - weight_local = local consumption factor - weight_flow = upstream flow factor - [weight] - ### = factor weight (###/10)
DOI: 10.17632/gk6sr9fwzp.1
title: Gravity wave activity in the Martian atmosphere at altitudes 20-160 km from ACS/TGO occultation measurements

description: The dataset represents results on gravity wave activity in the atmosphere of Mars obtained by the middle infrared spectrometer of the Atmospheric Chemistry Suite (ACS MIR) operating on board ExoMars Trace Gas Orbiter in solar occultation mode. The data coverage consists of 84 measurements in the Northern Hemisphere and 60 in the Southern one covering the period of Ls 164° to 354° of MY34. The data represents the latitude-altitude cross-sections of GW characteristics such as amplitudes, potential energy, fluxes, accelerations and zonal wind presented in the article of Starichenko et al. (2021) "Gravity wave activity in the Martian atmosphere at altitudes 20-160 km from ACS/TGO occultation measurements" with open access at ESSOAr: https://www.essoar.org/doi/abs/10.1002/essoar.10506561.2 For any detail or question mail to: starichenko.ed@phystech.edu (Ekaterina Starichenko)
DOI: 10.17632/b8gvwwd7s3.1
title: LINF_150019300

description: Cyclic nucleotide-binding domain containing protein Leishmania infantum (strain JPCM5)
DOI: 10.17632/2n3mnkz7yc.3
title: Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model: SITE ARCHITECTURE

description: Data and results for `SITE ARCHITECTURE` simulations. Simulations of cancerous cells in colony and tissue contexts with different source (points and grids), pattern, and graph site layouts. Each condition is run for 15 days (21600 ticks) with 10 replicates (random seeds 0 - 9). Cancerous cells (max_height x 1.5, meta_pref x 1.5, migra_threshold x 0.5) are introduced to the center of the environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [context]_[sites]_[configuration] - [context] - C = colony context, cancerous cells only - CH = tissue context, cancerous cells and healthy cells - [sites] - SOURCE = sites architecture defined by point (or set of points) sources - PATTERN = site architecture defined by pattern - GRAPH = site architecture defined by graph layout - [configuration] - SOURCE - constant = every point is a source, equivalent to constant source - point# = point source located at position # from center - grid# = grid of point sources with # spacing in both the x and y directions - xAyB = grid of point sources with A spacing in the x direction and B spacing in the y direction - nosite = no point is a source - PATTERN - simulations with PATTERN do not have a configuration label - GRAPH - Lav = line root graph with one artery and one vein (L11) - Lava = line root graph with two arteries and one vein (L21) - Lvav = line root graph with one artery and two veins (L12) - Sav = single root graph with one artery and one vein (S11) - Savav = single root graph with two arteries and two veins (S22)
DOI: 10.17632/pg8658vmz9.2
title: Identifying gaps and providing recommendations to address the shortcomings in the investigation of acne sequelae from the Personalising Acne: Consensus of Experts (supplementary information)

description: Supplementary information to: Layton A, et al. Identifying gaps and providing recommendations to address the shortcomings in the investigation of acne sequelae from the Personalising Acne: Consensus of Experts. Accepted for publication in JAAD International 2021. • Full list of consensus statements reached with voting results • Literature search methodology and references retrieved
DOI: 10.17632/hfmphzz7bm.1
title: LINF_150019100

description: hypothetical protein - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/9mjg54kcwv.6
title: Datset for Internal structure of Beck Hopelessness Scale: An analysis of method effects using the CT-C(M–1) model

description: The construct validity in relation to the dimensionality or factor structure of the Beck Hopelessness Scale (BHS) has long been debated in psychometrics. Irrelevant variance due to item wording (method effects) can distort the factor structure, and recent studies have examined the method factor’s role in the factor structure of the BHS. However, the models used to control the method effects have severe limitations, and new models are needed. One such model is the correlated trait-correlated method minus one (CT-C(M-1)), which is a powerful approach that gives the trait factor an unambiguous meaning and prevents the anomalous results associated with fully symmetrical bifactor modeling. The present work compares the fit and factor structure of the CT-C(M-1) model to bifactor models proposed in previous literature and evaluates the convergent validity of the CT-C(M-1) model and its discriminatory capacity by taking suicidal ideation as the criterion variable. This study used a large and heterogeneous open mode online sample of Argentinian people (N = 2,164). For this study, the adapted Beck Hopelessness Scale (BHS) version for the Argentinian population was used (Mikulic et al., 2009). This scale comprises 20 items with a dichotomous reply format (i.e., true or false) and is used to evaluate the respondent’s negative expectations for the future. In addition, the version of the Inventory of Suicide Orientation-30 (ISO-30) validated by Fernandez-Liporace and Casullo (2006) in Argentina was used for this study. The instrument measures the respondent’s level of agreement with certain statements using a four-point Likert scale (with responses ranging from 1, “I strongly disagree” to 4, “I strongly agree”). From the inventory, only the questions that were related to the dimension of SI were included (e.g., “In order to stop things from getting worse, I believe suicide is the solution”). Within the ISO-30 scale, the suicidal ideation factor is the one that has shown the highest consistency and evidence of measurement validity in the literature on the internal structure of the scale (Vecco et al., 2021). In the present research, the high-SI and no-SI groups were identified based on the scores obtained from the ISO-30 SI subscale (possible range values = 4–16). A total score of 4 (i.e., the participant marked “strongly disagree” on all items) was considered to indicate an absence of SI, while a score of 16 (i.e., the participant marked “strongly agree” on all items) indicated a high SI. Individuals scoring in the middle range were not included in the analyses. The results indicated that the CT-C(M-1) model with positive words as referenced items achieves the most adequate factor structure. The factorial scores derived from this model demonstrate good predictive and discriminating capabilities.
DOI: 10.17632/ncvfr2trwb.1
title: Covid-19 Go Away 2020 (C-19GA20)

description: The C-19GA20 dataset was gathered online in April 2020 from school and university students between 14 to 24 years of age. It provides insightful information about the students’ mental health, social lives, attitude towards Covid-19, impact of the Covid-19 Pandemic on students’ education, and their experience with online learning. The data includes 5 major groups of variables: 1) Socio-demographic data - age group, gender, current place of stay, study level in their institution 2) 4 items for information regarding connectivity to the internet during the lockdown - device availability for exclusive use, internet bandwidth, top 5 online tools used most commonly, and screen time. 3) 9 items measured the impact of Covid-19 on the students’ social lives - their current situation of living, number of people around them where they live, their feelings towards meeting their friends, visiting their institution of study, events that would have been held offline. Students were asked about their top 5 past time activities during the lockdown and the amount of time they spend on social media online. 4) 6 items to gauge their experience with online learning during the lockdown - questions about feeling connected to their peers, maintaining discipline, structured learning, and the stress/burden felt by them due to online learning in the lockdown 5) 11 items to comprehensively gather information about the students’ mental health - how well have they adapted to stay-at-home instructions, their overall mood in the lockdown, feelings towards Covid 19, their prime concerns regarding their academic schedule, being updated and informed about Covid 19, the impact of social media on their beliefs. Finally, the students were asked to write about how they feel the pandemic has changed them as a person and affected their thinking process, and the students were asked to share a one-line message for the world during the lockdown.
DOI: 10.17632/sgvz333n6z.1
title: LINF_150019400

description: protein kinase Leishmania infantum (strain JPCM5)
DOI: 10.17632/t8rwkfsk2s.2
title: Data for Effects of direct and indirect (coded) written corrective feedback on second language learners’ grammatical accuracy over time.

description: This study investigated the effect of direct and indirect (coded) written corrective feedback (WCF) on the grammatical accuracy in the use of past tense and articles by grade eight Bhutanese students (n = 45). The study also explored the extent to which the use of WCF may affect the syntactic complexity in the students’ writing. Participants wrote narrative essays on a given topic, each for the pretest, followed by three treatment sessions, posttest, and delayed posttest. One treatment groups received direct WCF and the other indirect WCF while the control group did not receive WCF. Findings show the indirect WCF group outperformed the direct WCF group and the control group significantly on the grammatical accuracy measures taken at posttest. It also found WCF did not affect the syntactic complexity of the students’ writing.
DOI: 10.17632/ys9n3hdskt.1
title: Small World Information

description: We provide all data, relative metadata and the algorithm utilized for this study. In the list of simulations file, we report the list of simulations launched for this study where we indicate for each configuration, conveniently indexed, the number of words, of letters, total length and frequency of the originating stimulus. Data 1: Network layouts. We report for each of the analyzed configurations the coordinates of the nodes (NODES) and the connection matrices (MATRIX) relative to those configurations. Data 2: performance of the Networks. We report as a function of small-world-ness, for each of the networks tested for this study (ANALYSIS CONFIGURATIONS 1-101): 1. The number of repetitions (trials) 2. The maximum number of propagation steps of the signal in the networks 3. The number of active nodes 4. The total information transported in a grid 5. The total information transported in a grid divided by the information transported by the stimulus 6. The total information transported in a grid divided by the number of active nodes 7. The total information transported in a grid divided by the information transported by the stimulus and the number of active nodes 8. The maximum distance at which the information is transported 9. The node at the maximum distance at which the information is transported 10. Information at the maximum distance 11. Information at the maximum distance divided by the information carried by the stimulus 12. Then mean information transported in the network per step Data 3: original data. We report for each of the networks tested for this study the originating MATRICES of information containing for each node of the network and for each propagation step the information processed by that node (NCONFIGURATIONS 1-101). Data 4: the algorithm. We report the algorithm that was used to simulate the propagation of signals in the networks, and decode the information carried by the disturbance travelling in the grids. Moreover, we include the originating pseudocode with some of its parts commented for convenience of the reader.
DOI: 10.17632/9zfncc3t8j.1
title: Wild bats briefly decouple sound production from wingbeats to increase sensory flow during prey captures
DOI: 10.17632/844ktyf9pd.1
title: Product line selection of fast-moving consumer goods under stochastic demand: instances

description: These files contain instances (no prefix), solutions (prefix w), scenario sets (prefix c), and multivariate distribution approximations resulting from scenario reductions (prefix p for probability files and s for scenario files). For the full description and see the paper's Data in Brief.
DOI: 10.5281/zenodo.5105966
title: Kopaitic Island chinstrap penguins (complete synoptic survey dataset)

description: These represent the unprocessed, "fresh out the instrument" datasets for chinstrap penguins instrumented at Kopaitic Island, northwestern Antarctic Peninsula during the austral summer 2018-2019. Instrumentation was using Technosmart Axy-trek and AGM devices, with proprietary X-Manager software used to extract and save the data.
DOI: 10.34740/kaggle/dsv/2428123
title: COVID Vaccination in World (updated daily)
DOI: 10.3886/e118942
title: Data and Code for: College Admission with Multidimensional Privileges: The Brazilian Affirmative Action Case

description: In 2012 Brazilian public universities were mandated to use affirmative action policies for candidates from racial and income minorities. We show that the policy makes the students' affirmative action status a strategic choice, and may reject high-achieving minority students while admitting low-achieving majority students. Empirical data shows evidence consistent with this type of unfairness in more than 49\% of the programs. We propose a selection criterion and an incentive-compatible mechanism that, for a wider range of similar problems and the one in Brazil in particular, removes any gain from strategizing over the privileges claimed and is fair.
DOI: 10.3886/e118942v1
title: Data and Code for: College Admission with Multidimensional Privileges: The Brazilian Affirmative Action Case

description: In 2012 Brazilian public universities were mandated to use affirmative action policies for candidates from racial and income minorities. We show that the policy makes the students' affirmative action status a strategic choice, and may reject high-achieving minority students while admitting low-achieving majority students. Empirical data shows evidence consistent with this type of unfairness in more than 49\% of the programs. We propose a selection criterion and an incentive-compatible mechanism that, for a wider range of similar problems and the one in Brazil in particular, removes any gain from strategizing over the privileges claimed and is fair.
DOI: 10.5281/zenodo.5106119
title: Processed data used in transcriptome- metabolome-wide association study

description: Processed_RNASeq_RPKM.txt contains RPKM levels for 45484 genes quantified in 555 individuals from RNA-Seq of lymphoblastoid cell lines (LCLs). Processed_NMRpeaks_baseline.txt contains binned, normalized and standardised (z-scored) NMR peak intensities for 1276 bins quantified in 555 individuals from urine samples taken at baseline. NMR spectra were acquired at 300 K on a Bruker 16.4 T Avance II 700 MHz NMR spectrometer (Bruker Biospin, Rheinstetten, Germany) using a standard 1H detection pulse sequence with water suppression. The spectra were referenced to the TSP signal and phase and baseline corrected. Processed_NMRpeaks_followup.txt contains binned, normalized and standardised (z-scored) NMR peak intensities for 1289 bins quantified in 315 individuals from urine samples taken during follow-up. NMR spectra were acquired with an Avance III HD 600 NMR spectrometer. Spectra were referenced to the TSP signal and phase and baseline corrected. More details on the data set can be found in Sönmez Flitman et al. (doi: https://doi.org/10.1101/2020.05.22.110197).
DOI: 10.5281/zenodo.5106118
title: Processed data used in transcriptome- metabolome-wide association study

description: Processed_RNASeq_RPKM.txt contains RPKM levels for 45484 genes quantified in 555 individuals from RNA-Seq of lymphoblastoid cell lines (LCLs). Processed_NMRpeaks_baseline.txt contains binned, normalized and standardised (z-scored) NMR peak intensities for 1276 bins quantified in 555 individuals from urine samples taken at baseline. NMR spectra were acquired at 300 K on a Bruker 16.4 T Avance II 700 MHz NMR spectrometer (Bruker Biospin, Rheinstetten, Germany) using a standard 1H detection pulse sequence with water suppression. The spectra were referenced to the TSP signal and phase and baseline corrected. Processed_NMRpeaks_followup.txt contains binned, normalized and standardised (z-scored) NMR peak intensities for 1289 bins quantified in 315 individuals from urine samples taken during follow-up. NMR spectra were acquired with an Avance III HD 600 NMR spectrometer. Spectra were referenced to the TSP signal and phase and baseline corrected. More details on the data set can be found in Sönmez Flitman et al. (doi: https://doi.org/10.1101/2020.05.22.110197).
DOI: 10.3886/e111281
title: Data and Code for: Information Redundancy Neglect versus Overconfidence: A Social Learning Experiment

description: We study social learning in a continuous action space experiment. Subjects,acting in sequence, state their belief about the value of a good, afterobserving their predecessors' statements and a private signal. We comparethe behavior in the laboratory with the Perfect Bayesian Equilibriumprediction and the predictions of bounded rationality models of decisionmaking: the redundancy of information neglect model and the overconfidencemodel. The results of our experiment are in line with the predictions of theoverconfidence model and at odds with the others'.
description: Undergraduate students at University College London (UK).
DOI: 10.3886/e111281v1
title: Data and Code for: Information Redundancy Neglect versus Overconfidence: A Social Learning Experiment

description: We study social learning in a continuous action space experiment. Subjects,acting in sequence, state their belief about the value of a good, afterobserving their predecessors' statements and a private signal. We comparethe behavior in the laboratory with the Perfect Bayesian Equilibriumprediction and the predictions of bounded rationality models of decisionmaking: the redundancy of information neglect model and the overconfidencemodel. The results of our experiment are in line with the predictions of theoverconfidence model and at odds with the others'.
description: Undergraduate students at University College London (UK).
DOI: 10.5281/zenodo.4686757
title: Worker size diversity has no effect on overwintering success under natural conditions in the ant Temnothorax nylanderi.

description: Data from the overwintering study using Temnothorax nylanderi in the field.
DOI: 10.5281/zenodo.5105734
title: Disentangling the roles of social and individual effects on cadmium tolerance in the ant Temnothorax nylanderi.

description: Data from the paper 'Disentangling the roles of social and individual effects on cadmium tolerance in the ant Temnothorax nylanderi.'
DOI: 10.5281/zenodo.4686756
title: Worker size diversity has no effect on overwintering success under natural conditions in the ant Temnothorax nylanderi.

description: Data from the overwintering study using Temnothorax nylanderi in the field.
DOI: 10.5281/zenodo.5105733
title: Disentangling the roles of social and individual effects on cadmium tolerance in the ant Temnothorax nylanderi.

description: Data from the paper 'Disentangling the roles of social and individual effects on cadmium tolerance in the ant Temnothorax nylanderi.'
DOI: 10.3886/e120229
title: Data and Code for: Government Financing of R&D: A mechanism Design Approach".

description: We study the optimal design of government R&D loans for risky projects with positive externalities. With adverse selection, the optimal contract involves a high interest rate with zero co-financing by the entrepreneur. This contrasts sharply with observed programs. With adverse selection and moral hazard, with two effort levels by the entrepreneur, the optimal policy is a menu of at most two contracts, one with high interest rate and zero self-financing, and a second with low interest and maximum feasible co-financing. Calibrated simulations compare welfare gains from the optimal contract, observed schemes and a direct subsidy to private venture capital firms.
DOI: 10.3886/e120229v1
title: Data and Code for: Government Financing of R&D: A mechanism Design Approach".

description: We study the optimal design of government R&D loans for risky projects with positive externalities. With adverse selection, the optimal contract involves a high interest rate with zero co-financing by the entrepreneur. This contrasts sharply with observed programs. With adverse selection and moral hazard, with two effort levels by the entrepreneur, the optimal policy is a menu of at most two contracts, one with high interest rate and zero self-financing, and a second with low interest and maximum feasible co-financing. Calibrated simulations compare welfare gains from the optimal contract, observed schemes and a direct subsidy to private venture capital firms.
DOI: 10.3886/e120083
title: Data and Code for: Common Ownership in America 1980-2017

description: We empirically assess the implications of the common ownership hypothesis from a historical perspective using the set of S&P 500 firms from 1980–2017. We show that the dramatic rise in common ownership in the time series is driven primarily by the rise of indexing and diversification and, in the cross–section, by investor concentration, which the theory presumes to drive a wedge between cash flow rights and control. We also show that the theory predicts incentives for expropriation of undiversified shareholders via tunneling, even in the Berle and Means (1932) world of the widely held firm.<br><br>We include additional data on scraped SEC 13f forms for 2000-2017. The rest of the data is provided or downloaded from WRDS and requires a WRDS account.
description: All Investors Filing SEC 13f forms.<br><br>We are limited to investments firms with large market capitalization to capture a superset of S&P500 components..
description: web scraping; See https://sites.google.com/view/msinkinson/research/common-ownership-data? for a full description of how data were collected.