cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.12786395
title: Supplemental Material for Treibergs and Giribet, 2020

description: Table S1: Sample preparation dates for RNA-sequencing<br>Table S2: Trinity transcriptome assembly metrics for Rhodomonas salina.<br><br>Table S3. Annotation of differentially expressed genes up-regulated in autozooid and avicularium tissue<br><br>Figure S1: Bryozoan collection sites.<br><br>Figure S2: Bryozoan culture<br><br>Figure S3: Bryozoan colony growth<br><br>Figure S4: Removal of R. salina contamination<br><br>Figure S5: BUSCO analysis of assembly completeness<br><br>Figure S6: ExN50 Plots<br><br>Figure S7: Shared and significantly up-regulated gene transcripts of each zooid type<br><br>Figure S8: Autozooid and avicularium transcriptome sample relationships.<br><br>Figure S9: Autozooid and avicularium transcriptome gene ontology, biological processes.<br><br>Figure S10 Autozooid and avicularium transcriptome GO, cellular components<br>Figure S11: Autozooid and avicularium transcriptome gene ontology, molecular function<br><br><br><b><br></b>
DOI: 10.6084/m9.figshare.6944675
title: Additional file 1: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S1. Data sources for creating an RNA-seq meta-atlas. (XLSX 16 kb)
DOI: 10.25387/g3.12786395.v1
title: Supplemental Material for Treibergs and Giribet, 2020

description: Table S1: Sample preparation dates for RNA-sequencing<br>Table S2: Trinity transcriptome assembly metrics for Rhodomonas salina.<br><br>Table S3. Annotation of differentially expressed genes up-regulated in autozooid and avicularium tissue<br><br>Figure S1: Bryozoan collection sites.<br><br>Figure S2: Bryozoan culture<br><br>Figure S3: Bryozoan colony growth<br><br>Figure S4: Removal of R. salina contamination<br><br>Figure S5: BUSCO analysis of assembly completeness<br><br>Figure S6: ExN50 Plots<br><br>Figure S7: Shared and significantly up-regulated gene transcripts of each zooid type<br><br>Figure S8: Autozooid and avicularium transcriptome sample relationships.<br><br>Figure S9: Autozooid and avicularium transcriptome gene ontology, biological processes.<br><br>Figure S10 Autozooid and avicularium transcriptome GO, cellular components<br>Figure S11: Autozooid and avicularium transcriptome gene ontology, molecular function<br><br><br><b><br></b>
DOI: 10.6084/m9.figshare.6944675.v1
title: Additional file 1: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S1. Data sources for creating an RNA-seq meta-atlas. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6944648
title: Additional file 18: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S18. Comparison of co-expression clusters between the RNA-seq atlas and the Lizio, et al. CAGE dataset [53]. (XLSX 108 kb)
DOI: 10.6084/m9.figshare.6944648.v1
title: Additional file 18: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S18. Comparison of co-expression clusters between the RNA-seq atlas and the Lizio, et al. CAGE dataset [53]. (XLSX 108 kb)
DOI: 10.6084/m9.figshare.6944630
title: Additional file 17: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S17. Clusters of co-expressed CAGE tags, obtained via network analysis of the Lizio, et al. dataset [53]. (XLSX 3452 kb)
DOI: 10.6084/m9.figshare.6944630.v1
title: Additional file 17: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S17. Clusters of co-expressed CAGE tags, obtained via network analysis of the Lizio, et al. dataset [53]. (XLSX 3452 kb)
DOI: 10.6084/m9.figshare.6944612
title: Additional file 16: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S16. Correlation of expression profiles for genes with a known protein-protein interaction. (XLSX 4202 kb)
DOI: 10.6084/m9.figshare.6944612.v1
title: Additional file 16: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S16. Correlation of expression profiles for genes with a known protein-protein interaction. (XLSX 4202 kb)
DOI: 10.6084/m9.figshare.6944603
title: Additional file 15: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S15. GO term enrichment for co-expression clusters containing &gt;â =â 100 genes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.6944603.v1
title: Additional file 15: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S15. GO term enrichment for co-expression clusters containing &gt;â =â 100 genes. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.6944585
title: Additional file 14: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S14. Proportion of genes in each co-expression cluster whose highest PEM is for a given tissue. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6944585.v1
title: Additional file 14: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S14. Proportion of genes in each co-expression cluster whose highest PEM is for a given tissue. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6944579
title: Additional file 8: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S5. Summary of microbial genomes. This table provides a summary of marker genes, completeness, contamination, and RPKM values for genomes investigated in this study. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6944579.v1
title: Additional file 8: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S5. Summary of microbial genomes. This table provides a summary of marker genes, completeness, contamination, and RPKM values for genomes investigated in this study. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6944570
title: Additional file 13: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S13. Clusters of co-expressed genes (obtained via network analysis of the RNA-seq meta-dataset), including candidate gene names for unannotated GalGal5 protein-coding genes. (XLSX 1432 kb)
DOI: 10.6084/m9.figshare.6944570.v1
title: Additional file 13: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S13. Clusters of co-expressed genes (obtained via network analysis of the RNA-seq meta-dataset), including candidate gene names for unannotated GalGal5 protein-coding genes. (XLSX 1432 kb)
DOI: 10.6084/m9.figshare.6944561
title: Additional file 7: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S4. Summary of RPKM values, number of viral OTUs, and Shannon diversity index. A per sample summary of these values is provided. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6944561.v1
title: Additional file 7: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S4. Summary of RPKM values, number of viral OTUs, and Shannon diversity index. A per sample summary of these values is provided. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6944552
title: Additional file 12: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S12. Tissues whose expression vectors are most strongly correlated with each other. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6944552.v1
title: Additional file 12: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S12. Tissues whose expression vectors are most strongly correlated with each other. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6944522
title: Additional file 1 of Fusion of encoder-decoder deep networks improves delineation of multiple nuclear phenotypes

description: Supplementary materials. (ZIP 120,330 kb)
DOI: 10.6084/m9.figshare.6944522.v1
title: Additional file 1 of Fusion of encoder-decoder deep networks improves delineation of multiple nuclear phenotypes

description: Supplementary materials. (ZIP 120,330 kb)
DOI: 10.6084/m9.figshare.6944519
title: Additional file 11: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S11. All-against-all correlation matrix for each tissue in the meta-dataset. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6944519.v1
title: Additional file 11: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S11. All-against-all correlation matrix for each tissue in the meta-dataset. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6944510
title: Additional file 2: of A description of health care system factors in the implementation of universal weight management services for children with overweight or obesity: case studies from Queensland and New South Wales, Australia

description: CFIR construct ratings with indicative quotes (see comment blocks within colour-coded blocks). (XLSX 25 kb)
DOI: 10.6084/m9.figshare.6944510.v1
title: Additional file 2: of A description of health care system factors in the implementation of universal weight management services for children with overweight or obesity: case studies from Queensland and New South Wales, Australia

description: CFIR construct ratings with indicative quotes (see comment blocks within colour-coded blocks). (XLSX 25 kb)
DOI: 10.6084/m9.figshare.6944495
title: Additional file 10: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S10. GO term enrichment for those subsets of genes whose highest PEM is for a given tissue. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.6944495.v1
title: Additional file 10: of Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

description: Table S10. GO term enrichment for those subsets of genes whose highest PEM is for a given tissue. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.6944486
title: Additional file 3: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S3. RPKM values for viral, reductive dsrA-, dsrD-, and mcrA-containing contigs. These tables were used as inputs for many of the analyses indicated in the Methods session. (XLSX 376Â kb)
DOI: 10.6084/m9.figshare.6944486.v1
title: Additional file 3: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S3. RPKM values for viral, reductive dsrA-, dsrD-, and mcrA-containing contigs. These tables were used as inputs for many of the analyses indicated in the Methods session. (XLSX 376Â kb)
DOI: 10.6084/m9.figshare.6944468
title: Additional file 2: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S2. Assembly statistics. A summary of assembly statics (number of mapped reads and contig length) is provided for both each individual assembly and the merged contig set. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6944468.v1
title: Additional file 2: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S2. Assembly statistics. A summary of assembly statics (number of mapped reads and contig length) is provided for both each individual assembly and the merged contig set. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6944447
title: Additional file 1: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S1. Summary of samples. Sample names in this study are corresponded to samples names in our previous 16S rRNA gene study [9]. Genomic DNA (gDNA) concentrations obtained for each sample and total DNA retrieved are presented. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6944450
title: Additional file 9: of Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes

description: Functional assays of the Nematode-Specific Peptide family, group F (NSPF) gene family. The fecundity data for total reproductive success and competitive reproductive success of NSPF knockout males. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6944447.v1
title: Additional file 1: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S1. Summary of samples. Sample names in this study are corresponded to samples names in our previous 16S rRNA gene study [9]. Genomic DNA (gDNA) concentrations obtained for each sample and total DNA retrieved are presented. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6944450.v1
title: Additional file 9: of Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes

description: Functional assays of the Nematode-Specific Peptide family, group F (NSPF) gene family. The fecundity data for total reproductive success and competitive reproductive success of NSPF knockout males. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6944438
title: Additional file 1: of Novel roles for scleraxis in regulating adult tenocyte function

description: Transcriptomic Data. Differential expression analysis and normalized counts for all genes and samples. (XLSX 2345 kb)
DOI: 10.6084/m9.figshare.6944438.v1
title: Additional file 1: of Novel roles for scleraxis in regulating adult tenocyte function

description: Transcriptomic Data. Differential expression analysis and normalized counts for all genes and samples. (XLSX 2345 kb)
DOI: 10.6084/m9.figshare.6944420
title: Additional file 1 of PRIMO Monte Carlo software benchmarked against a reference dosimetry dataset for 6 MV photon beams from Varian linacs

description: Excel file, with additional tables, and images on the EBT3 film experimental setup. (XLSX 470 kB)
DOI: 10.6084/m9.figshare.6944420.v1
title: Additional file 1 of PRIMO Monte Carlo software benchmarked against a reference dosimetry dataset for 6 MV photon beams from Varian linacs

description: Excel file, with additional tables, and images on the EBT3 film experimental setup. (XLSX 470 kB)
DOI: 10.6084/m9.figshare.6944399
title: Additional file 11: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S6. Summary of viral taxonomy. Taxonomic classification and vContact-based clustering for each viral contig are provided. (XLSX 81kb)
DOI: 10.6084/m9.figshare.6944399.v1
title: Additional file 11: of Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems

description: Table S6. Summary of viral taxonomy. Taxonomic classification and vContact-based clustering for each viral contig are provided. (XLSX 81kb)
DOI: 10.6084/m9.figshare.6944384
title: Additional file 2: of Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes

description: Proteome data for C. elegans and C. remanei. Un-activated spermatid, membranous organelle, and active sperm proteome data for both species analyzed, including WormBase gene identifiers, protein abundances, and peptide coverage. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.6944384.v1
title: Additional file 2: of Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes

description: Proteome data for C. elegans and C. remanei. Un-activated spermatid, membranous organelle, and active sperm proteome data for both species analyzed, including WormBase gene identifiers, protein abundances, and peptide coverage. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.6944207
title: Nursing higher education in MERCOSUR: a bibliometric study

description: ABSTRACT Objective: to identify productions that approach nursing high education in member states of MERCOSUR. Method: bibliometric study with quantitative approach carried out in search mechanisms, such as BVS, Capes, SciELO, Scopus and PubMed, between 2006 and 2015. It was found 301 articles about nursing education in MERCOSUR. Results: point to concern for the nurse’s education for public health policies, for teacher’s education and the teaching-learning process. However, publications regarding technologies associated with distance education on health field are low. Conclusion: this study contributes with discussion in nursing education field when points to the themes regarding the production about nurses’ education in MERCOSUR, specially, the range of targets set up in the Educational MERCOSUR agreement.
DOI: 10.6084/m9.figshare.6944207.v1
title: Nursing higher education in MERCOSUR: a bibliometric study

description: ABSTRACT Objective: to identify productions that approach nursing high education in member states of MERCOSUR. Method: bibliometric study with quantitative approach carried out in search mechanisms, such as BVS, Capes, SciELO, Scopus and PubMed, between 2006 and 2015. It was found 301 articles about nursing education in MERCOSUR. Results: point to concern for the nurse’s education for public health policies, for teacher’s education and the teaching-learning process. However, publications regarding technologies associated with distance education on health field are low. Conclusion: this study contributes with discussion in nursing education field when points to the themes regarding the production about nurses’ education in MERCOSUR, specially, the range of targets set up in the Educational MERCOSUR agreement.
DOI: 10.6084/m9.figshare.6944198
title: Polarization of light: basic concepts and applications in astrophysics

description: Abstract The astrophysics allows to understand applications about physical laws and it constitutes a powerful, didactic tool for the teaching. Concepts of the electromagnetism, such as the polarization of the light let us study different astronomical objects, such as stars, planets and galaxies. This work shows an historical revision about the polarization, physical concepts described by Maxwell's equation. Also, some concepts as polarization states, Stokes parameters and polarization processes will be presented. As well applications in solar physics, planetary systems, interstellar matter, Astronomical Massers, pulsars and Active Galactic Nuclei will be described in this article.
DOI: 10.6084/m9.figshare.6944201
title: Physical training reverses changes in hepatic mitochondrial diameter of Alloxan-induced diabetic rats

description: ABSTRACT Objective To investigate the effects of physical training on metabolic and morphological parameters of diabetic rats. Methods Wistar rats were randomized into four groups: sedentary control, trained control, sedentary diabetic and trained diabetic. Diabetes mellitus was induced by Alloxan (35mg/kg) administration for sedentary diabetic and Trained Diabetic Groups. The exercise protocol consisted of swimming with a load of 2.5% of body weight for 60 minutes per day (5 days per week) for the trained control and Trained Diabetic Groups, during 6 weeks. At the end of the experiment, the rats were sacrificed and blood was collected for determinations of serum glucose, insulin, albumin and total protein. Liver samples were extracted for measurements of glycogen, protein, DNA and mitochondrial diameter determination. Results The sedentary diabetic animals presented decreased body weight, blood insulin, and hepatic glycogen, as well as increased glycemia and mitochondrial diameter. The physical training protocol in diabetic animals was efficient to recovery body weight and liver glycogen, and to decrease the hepatic mitochondrial diameter. Conclusion Physical training ameliorated hepatic metabolism and promoted important morphologic adaptations as mitochondrial diameter in liver of the diabetic rats.
DOI: 10.6084/m9.figshare.6944201.v1
title: Physical training reverses changes in hepatic mitochondrial diameter of Alloxan-induced diabetic rats

description: ABSTRACT Objective To investigate the effects of physical training on metabolic and morphological parameters of diabetic rats. Methods Wistar rats were randomized into four groups: sedentary control, trained control, sedentary diabetic and trained diabetic. Diabetes mellitus was induced by Alloxan (35mg/kg) administration for sedentary diabetic and Trained Diabetic Groups. The exercise protocol consisted of swimming with a load of 2.5% of body weight for 60 minutes per day (5 days per week) for the trained control and Trained Diabetic Groups, during 6 weeks. At the end of the experiment, the rats were sacrificed and blood was collected for determinations of serum glucose, insulin, albumin and total protein. Liver samples were extracted for measurements of glycogen, protein, DNA and mitochondrial diameter determination. Results The sedentary diabetic animals presented decreased body weight, blood insulin, and hepatic glycogen, as well as increased glycemia and mitochondrial diameter. The physical training protocol in diabetic animals was efficient to recovery body weight and liver glycogen, and to decrease the hepatic mitochondrial diameter. Conclusion Physical training ameliorated hepatic metabolism and promoted important morphologic adaptations as mitochondrial diameter in liver of the diabetic rats.
DOI: 10.6084/m9.figshare.6944195
title: Quality of life and eating attitudes of health care students

description: ABSTRACT Objective: To assess the quality of life and eating attitudes of health care students of the undergraduate programs of a public university. Method: Observational, cross-sectional, and quantitative study performed in a federal university. Three questionnaires were used for data collection: a socio-demographic and academic, the WHOQOL-BREF and the Eating Attitudes Test (EAT-26). Result: 399 students participated in this study, most women, average age of 22 years, average scores of EAT-26 of 15.12 and quality-of-life averages above 60 points in all domains. The students of the undergraduate program in Nutrition presented more inappropriate eating attitudes than other health care students; as the age evolves, vulnerability to inadequate eating attitudes increases; and the family income influenced negatively the quality of life in Physical and Social domains. Conclusions: Inadequate eating attitude diminishes the quality of life of health care students in all domains of the WHOOQOL-BREF.
DOI: 10.6084/m9.figshare.6944198.v1
title: Polarization of light: basic concepts and applications in astrophysics

description: Abstract The astrophysics allows to understand applications about physical laws and it constitutes a powerful, didactic tool for the teaching. Concepts of the electromagnetism, such as the polarization of the light let us study different astronomical objects, such as stars, planets and galaxies. This work shows an historical revision about the polarization, physical concepts described by Maxwell's equation. Also, some concepts as polarization states, Stokes parameters and polarization processes will be presented. As well applications in solar physics, planetary systems, interstellar matter, Astronomical Massers, pulsars and Active Galactic Nuclei will be described in this article.