cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5ht0fv1
title: Data from: Immune deployment increases larval vulnerability to predators and inhibits adult life-history traits in a dragonfly

description: While deploying immune defenses early in ontogeny can trade-off with the
 production and maintenance of other important traits across the entire
 life cycle, it remains largely unexplored how features of the environment
 shape the magnitude or presence of these lifetime costs. Greater predation
 risk during the juvenile stage may particularly influence such costs by 1)
 magnifying the survival costs that arise from any handicap of juvenile
 avoidance traits and/or 2) intensifying allocation trade-offs with
 important adult traits. Here, we tested for predator-dependent costs of
 immune deployment within and across life stages using the dragonfly,
 Pachydiplax longipennis. We first examined how larval immune deployment
 affected two traits associated with larval vulnerability to predators:
 escape distance and foraging under predation risk. Larvae that were
 induced to mount an immune response had shorter escape distances but lower
 foraging activity in the presence of predator cues. We also induced immune
 responses in larvae and reared them through emergence in mesocosms that
 differed in the presence of large predatory dragonfly larvae (Aeshnidae
 spp.). Immune-challenged larvae had later emergence overall and lower
 survival in pools with predators. Immune-challenged males were also
 smaller at emergence and developed less sexually selected melanin wing
 coloration, but these effects were independent of predator treatment.
 Overall, these results highlight how mounting an immune defense early in
 ontogeny can have substantial ecological and physiological costs that
 manifest both within and across life stages.
description: Moore_Lis_Martin_2018_JEB_survival_emergenceMoore_Lis_Martin_2018_JEB_adult_lhMoore_Lis_Martin_2018_JEB_ornamentMoore_Lis_Martin_2018_JEB_performance_costsMoore_Lis_Martin_2018_JEB_immune_pilotMoore_Lis_Martin_2018_JEB_marking_pilot
DOI: 10.5061/dryad.70m9r
title: Data from: Morphological analysis of phylogenetic relationships among extant rhynchonellide brachiopods

description: Rhynchonellida is the stratigraphically oldest and phylogenetically most
 basal of the extant rhynchonelliform brachiopod orders, yet phylogenetic
 relationships among rhynchonellides are poorly known. The fourteen named
 rhynchonellide superfamilies (four of which have extant representatives)
 were defined primarily on the basis of features of the dorsal cardinalia,
 particularly crural morphology, but their homology and polarity have not
 been investigated rigorously. Superfamily monophyly is unclear, as is the
 evolution of several distinctive rhynchonellide morphological features,
 such as crura. The purpose of this study is to investigate the
 phylogenetic relationships among extant rhynchonellide genera using
 skeletal characters, and to compare the results with the current
 classification, elucidating the evolution of morphological features in the
 process. We completed parsimony-based and Bayesian analyses using
 fifty-eight characters of the interior and exterior of the shell that vary
 among the nineteen extant genera. Our results are readily interpretable
 with respect to the classification, and indicate that Hemithiridoidea,
 Dimerelloidea, and (in some analyses) Pugnacoidea appear to be
 monophyletic. Species classified in Dimerelloidea and Pugnacoidea, and in
 certain cases Hemithiridoidea, each form derived subclades that evolve
 from within a paraphyletic Norelloidea at the base of each subclade.
 Raduliform crura appear to be the most basal, phylogenetically; five other
 crural morphologies evolve from the raduliform state. However,
 morphological characters currently uniting genera in rhynchonellide
 superfamilies are not clearly diagnostic and exhibit a relatively high
 degree of homoplasy overall, suggesting that consistency with the
 classification may be based on a false sense of confidence in
 rhynchonellide morphology to clearly elucidate evolutionary relationships.
 Published molecular phylogenetic hypotheses conflict with the
 morphological topologies, further supporting this possibility. The
 evolutionary trends among diagnostic characters of Recent rhynchonellides
 appear to reflect successive juvenilization in adult morphology in several
 subclades, suggesting that heterochrony may have played an important role
 in the evolution of the group.
description: Schreiber_Supplemental_Data_1List of character changes across reweighted tree (Fig. 4)Schreiber_Supplemental_Data_2List of apomorphies across reweighted tree (Fig. 4).schreiber_etal_matrix
DOI: 10.5061/dryad.c76pf34
title: Data from: Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: a proof of concept in a highly promiscuous bird

description: Information on genetic relationships among individuals is essential to
 many studies of the behavior and ecology of wild organisms. Parentage and
 relatedness assays based on large numbers of SNP loci hold substantial
 advantages over the microsatellite markers traditionally used for these
 purposes. We present a double-digest restriction site-associated DNA
 sequencing (ddRAD-seq) analysis pipeline that, as such, simultaneously
 achieves the SNP discovery and genotyping steps and which is optimized to
 return a statistically powerful set of SNP markers (typically 150-600
 after stringent filtering) from large numbers of individuals (up to 240
 per run). We explore the tradeoffs inherent in this approach through a set
 of experiments in a species with a complex social system, the variegated
 fairy-wren (Malurus lamberti), and further validate it in a
 phylogenetically broad set of other bird species. Through direct
 comparisons with a parallel dataset from a robust panel of highly variable
 microsatellite markers, we show that this ddRAD-seq approach results in
 substantially improved power to discriminate among potential relatives and
 considerably more precise estimates of relatedness coefficients. The
 pipeline is designed to be universally applicable to all bird species (and
 with minor modifications to many other taxa), to be cost- and
 time-efficient, and to be replicable across independent runs such that
 genotype data from different study periods can be combined and analyzed as
 field samples are accumulated.
description: 2012-2016 MSAT
 GenotypesMicrosatellite genotypes
 of offspring and adult variegated fairy-wrens2012-2016 SNP
 GenotypesSNP genotypes of
 offspring and adult variegated fairy-wrenspost_rxstacks_assembly_allRAD loci from de novo assembly in Stacks for Indexes 1-8 (Group All)post_rxstacks_assembly_1RAD loci from de novo assembly in Stacks for Index 1 (Group A)post_rxstacks_assembly_9RAD loci from de novo assembly in Stacks for Index 9 (Group B)post_rxstacks_assembly_10RAD loci from de novo assembly in Stacks for Index 10 (Group C)post_rxstacks_assembly_11RAD loci from de novo assembly in Stacks for Index 11 (Group D)post_rxstacks_assembly_12RAD loci from de novo assembly in Stacks for Index 12 (Group E)popmap_allPopmap file for Indexes 1-8 (Group All) assemblypopmap_1Popmap file for Index 1 (Group A) assemblypopmap_9Popmap file for Index 9 (Group B) assemblypopmap_10Popmap file for Index 10 (Group C) assemblypopmap_11v2Popmap file for Index 11 (Group D) assemblypopmap_12v2Popmap file for Index 12 (Group E) assembly
DOI: 10.5061/dryad.ms343
title: Data from: Compromised external validity: federally produced cannabis does not reflect legal markets

description: As the most widely used illicit drug worldwide, and as a source of
 numerous under-studied pharmacologically-active compounds, a precise
 understanding of variability in psychological and physiological effects of
 Cannabis varieties is essential. The National Institute on Drug Abuse
 (NIDA) is designated as the sole legal producer of Cannabis for use in US
 research studies. We sought to compare the chemical profiles of Cannabis
 varieties that are available to consumers in states that have
 state-legalized use versus what is available to researchers interested in
 studying the plant and its effects. Our results demonstrate that the
 federally-produced Cannabis has significantly less variety and lower
 concentrations of cannabinoids than are observed in state-legal U.S.
 dispensaries. Most dramatically, NIDA’s varieties contain only 27% of the
 THC levels and as much as 11–23 times the Cannabinol (CBN) content
 compared to what is available in the state-legal markets. Research
 restricted to using the current range of federally-produced Cannabis thus
 may yield limited insights into the chemical, biological and
 pharmacological properties, and medical potential of material that is
 available in the state markets. Investigation is urgently needed on the
 full diversity of Cannabis chemotypes known to be available to the public.
description: raw_data_chemotypesThis is the raw data used to analyze the chemotypes from the different locations across the USdata_full_analysis_21122016.txtfor_pca_11042016Dataset used for the PCA analysis
DOI: 10.15468/wmhgbn
title: Wisconsin State Herbarium, Fungi

description: The University of Wisconsin-Madison Herbarium, founded in 1849, is a museum collection of dried, labeled fungi of state, national and international importance, which is used extensively for taxonomic and ecological research, as well as for teaching and public service. Today WIS is estimated to hold &gt;1.2 million specimens of algae, fungi, lichens, and plants, placing it among the top 1% of the world&rsquo;s largest herbarium. It is ranked 17th largest in the world outside of Europe, 11th largest in the Western Hemisphere, 10th largest in the USA, and the 3rd largest public university herbarium in the Americas.
DOI: 10.5061/dryad.qm1g8
title: Data from: Interspecific interactions through 2 million years: are competitive outcomes predictable?

description: Ecological interactions affect the survival and reproduction of
 individuals. However, ecological interactions are notoriously difficult to
 measure in extinct populations, hindering our understanding of how the
 outcomes of interactions such as competition vary in time and influence
 long-term evolutionary changes. Here, the outcomes of spatial competition
 in a temporally continuous community over evolutionary timescales are
 presented for the first time. Our research domain is encrusting
 cheilostome bryozoans from the Wanganui Basin of New Zealand over a ca 2
 Myr time period (Pleistocene to Recent). We find that a subset of species
 can be identified as consistent winners, and others as consistent losers,
 in the sense that they win or lose interspecific competitive encounters
 statistically more often than the null hypothesis of 50%. Most species do
 not improve or worsen in their competitive abilities through the 2 Myr
 period, but a minority of species are winners in some intervals and losers
 in others. We found that conspecifics tend to cluster spatially and
 interact more often than expected under a null hypothesis: most of these
 are stand-off interactions where the two colonies involved stopped growing
 at edges of encounter. Counterintuitively, competitive ability has no
 bearing on ecological dominance.
description: Wanganui_Cheilostome_interactionsR workspace containing bryozoan data and R functions required to reproduce analyses presented in the paper.Liow code bryozoansR code to reproduce analyses presented in the paper.Wanganui_Cheilostome_interactionsPlain text file containing bryozoan data.
DOI: 10.5517/ccdc.csd.cc1n56yz
title: CCDC 1524361: Experimental Crystal Structure Determination

description: Related Article: Tohru Wada, Shunsuke Nishimura, Taro Mochizuki, Tomohiro Ando, Yuji Miyazato|2017|Catalysts|7|56|doi:10.3390/catal7020056
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z99rb
title: CCDC 1826202: Experimental Crystal Structure Determination

description: Related Article: Patrick Weber, Seyed A. Nasseri, Bettina M. Pabst, Ana Torvisco, Philipp Müller, Eduard Paschke, Marion Tschernutter, Werner Windischhofer, Stephen G. Withers, Tanja M. Wrodnigg, Arnold E. Stütz|2018|Molecules|23|708|doi:10.3390/molecules23030708
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z99sc
title: CCDC 1826203: Experimental Crystal Structure Determination

description: Related Article: Patrick Weber, Seyed A. Nasseri, Bettina M. Pabst, Ana Torvisco, Philipp Müller, Eduard Paschke, Marion Tschernutter, Werner Windischhofer, Stephen G. Withers, Tanja M. Wrodnigg, Arnold E. Stütz|2018|Molecules|23|708|doi:10.3390/molecules23030708
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2012y3
title: CCDC 1848094: Experimental Crystal Structure Determination

description: Related Article: Olga G. Volostnykh, Olesya A. Shemyakina, Anton V. Stepanov, Igor A. Ushakov, Tatyana N. Borodina|2018|Synthesis|50|4905|doi:10.1055/s-0037-1609916
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.8qc40
title: Data from: Climate structures genetic variation across a species' elevation range: a test of range limits hypotheses

description: Gene flow may influence the formation of species range limits, yet little
 is known about the patterns of gene flow with respect to environmental
 gradients or proximity to range limits. With rapid environmental change it
 is especially important to understand patterns of gene flow to inform
 conservation efforts. Here we investigate the species range of the
 selfing, annual plant, Mimulus laciniatus, in the California Sierra
 Nevada. We assessed genetic variation, gene flow, and population abundance
 across the entire elevation-based climate range. Contrary to expectations,
 within-population plant density increased towards both climate limits.
 Mean genetic diversity of edge populations was equivalent to central
 populations, however all edge populations exhibited less genetic diversity
 than neighboring interior populations. Genetic differentiation was fairly
 consistent and moderate among all populations and no directional signals
 of contemporary gene flow were detected between central and peripheral
 elevations. Elevation-driven gene flow (isolation by environment), but not
 isolation by distance was found across the species range. These findings
 were the same towards high- and low-elevation range limits and were
 inconsistent with two common center-edge hypotheses invoked for the
 formation of species range limits: 1) decreasing habitat quality and
 population size; 2) swamping gene flow from large, central populations.
 This pattern demonstrates that climate, but not center-edge dynamics, is
 an important range-wide factor structuring M. laciniatus populations. To
 our knowledge this is the first empirical study to relate environmental
 patterns of gene flow to range limits hypotheses. Similar investigations
 across a wide variety of taxa and life histories are needed.
description: Marker
 genotypesGenotypes for 11
 codominant markers—including 3 single-copy, nuclear-gene-intron-length
 markers and eight microsatellite markers described in Sexton et al. for 23
 populations of Mimulus laciniatus in the California Sierra
 Nevada.laciniatus_microsat_dataset_Sexton_4_Dryad.xlsxDistance matricesGenetic, spatial, and climate distances among 23 populations of Mimulus laciniatusdistance_matrices_Sexton_4_Dryad_V2.xlsxPlant density dataAverage plant density sampled in moss patches within 12 randomly assigned 0.5 square meter plots at each Mimulus laciniatus study population.density_dataset_Sexton_4_Dryad_corrected.xlsx
DOI: 10.5517/ccdc.csd.cc2012z4
title: CCDC 1848095: Experimental Crystal Structure Determination

description: Related Article: Olga G. Volostnykh, Olesya A. Shemyakina, Anton V. Stepanov, Igor A. Ushakov, Tatyana N. Borodina|2018|Synthesis|50|4905|doi:10.1055/s-0037-1609916
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc201306
title: CCDC 1848096: Experimental Crystal Structure Determination

description: Related Article: Olga G. Volostnykh, Olesya A. Shemyakina, Anton V. Stepanov, Igor A. Ushakov, Tatyana N. Borodina|2018|Synthesis|50|4905|doi:10.1055/s-0037-1609916
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc201317
title: CCDC 1848097: Experimental Crystal Structure Determination

description: Related Article: Olga G. Volostnykh, Olesya A. Shemyakina, Anton V. Stepanov, Igor A. Ushakov, Tatyana N. Borodina|2018|Synthesis|50|4905|doi:10.1055/s-0037-1609916
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc204v34
title: CCDC 1851695: Experimental Crystal Structure Determination

description: Related Article: Ronald Y. Dong, Carl A. Michal, Marco Saccone, Matthias Spengler, Christoph Wölper, Michael Giese|2018|Chem.Phys.Lett.|710|39|doi:10.1016/j.cplett.2018.08.056
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.5gk51p0
title: Data from: Early Cretaceous cyclostome bryozoans from the early to middle Albian of the Glen Rose and Walnut formations of Texas, USA

description: The Glen Rose and Walnut formations of southcentral and northcentral Texas
 comprise shallow-water carbonates deposited during the late Aptian to
 middle Albian on a carbonate platform. The formations are famous for their
 rich fossil faunas. Although bryozoans are absent in late Aptian
 sediments, they are frequently found encrusting bivalve shells from the
 early to middle Albian parts of these formations. Here, we describe the
 cyclostome bryozoan fauna, which includes six species; Stomatopora sp.,
 Oncousoecia khirar n. sp., Reptomultisparsa mclemoreae n. sp.,
 Hyporosopora keera n. sp., Mesonopora bernardwalteri n. sp. and ?Unicavea
 sp. Most cyclostomes are found encrusting rudist shells from Unit 2 of the
 Lower Member of the Glen Rose Formation and units 3 and 6 of the Upper
 Member of the Glen Rose Formation.
description: Data Set 1 (Martha et
 al. 2018)_Glen Rose and Walnut cyclostome bryozoansGeographical and
 stratigraphic details for collection sites of bryozoan material from the
 Glen Rose and Walnut formations of southcentral Texas,
 USA.Data
 Set 1 (Martha et al. 2019)_Glen Rose and Walnut cyclostome
 bryozoans.pdfData Set 2 (Martha et
 al. 2018)_Glen Rose and Walnut cyclostome bryozoansGeographical and
 stratigraphic details for collection sites of bryozoan material from the
 Glen Rose and Walnut formations of northcentral Texas,
 USA.Data
 Set 2 (Martha et al. 2019)_Glen Rose and Walnut cyclostome
 bryozoans.pdf
DOI: 10.5517/ccdc.csd.cc2n5t2r
title: CCDC 2448444: Experimental Crystal Structure Determination

description: Related Article: Yanhui Zhao|2025|CSD Communication|||
description: Related Article: Yanhui Zhao, Tianhao Pang, Shuaipeng Xu, Yuanze Sun, Yawen Li, Qing Sun, Xiaoqian Shi, Khurshed Bozorov, Chao Niu, Xueqing Zhang, Wei Liu, Buer Song|2025|Chem.Biodiversity|22|e01916|doi:10.1002/cbdv.202501916
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ncyxx
title: CCDC 2454360: Experimental Crystal Structure Determination

description: Related Article: Yanhui Zhao|2025|CSD Communication|||
description: Related Article: Yanhui Zhao, Shuaipeng Xu, Tianhao Pang, Xueqing Zhang, Wei Liu, Buer Song|2025|Biomedical and Biotech. Res. J.|9|360|doi:10.4103/bbrj.bbrj_280_25
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.