cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8g0d0/3
title: Coordinates: big fish

description: Contains raw positional data for big fish.
DOI: 10.5061/dryad.8g0d0/4
title: Coordinates: small fish

description: Contains raw positional data for small fish.
DOI: 10.5061/dryad.8h067/1
title: Text S1

description: List of the Mansfield bonebed specimens used for character coding.
DOI: 10.5061/dryad.8h067/2
title: Table S1

description: Specimen list of the Mansfield bonebed material housed in museum collections.
DOI: 10.5061/dryad.8h067/3
title: Table S2

description: Compiled postorbital horncore measurements of Centrosaurinae, non-Triceratopsini Chasmosaurinae, and Triceratopsini.
DOI: 10.5061/dryad.8h067/4
title: Table S3

description: Compiled humerus and tibia circumference measurements of ceratopsids from Belly River Group and Judith River Formation (Campanian).
DOI: 10.5061/dryad.8h067/5
title: Supplemental data 1

description: Data matrix used in phylogenetic analysis in this study (TNT file).
DOI: 10.5061/dryad.8h067/6
title: Supplemental data 2

description: 3D data of a Medusaceratops parietal (ROM 73832, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.8h067/7
title: Supplemental data 3

description: 3D data of a Medusaceratops parietal (ROM 73837, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.8h067/8
title: Supplemental data 4

description: 3D data of a Medusaceratops postorbital (TMP 2002.069.0010, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.959g2/2
title: Metabolic Calculations for C. turbinata

description: Metabolic calculations used to estimate the proportion of prey energy consumed per time step in the dynamic model. Includes estimates of metabolic rate for C. turbinata in microliters of oxygen per hour (Greenstone & Bennett 1980) and conversion factors from Gnaiger 1983 and Riechert 1991.
DOI: 10.5061/dryad.959g2/3
title: Collated Predator and Prey Abundances for C. turbinata

description: These data describe daily patterns in the abundances of potential predators (wasps) and prey (arthropods &lt;1.5 cm in length) of C. turbinata in the field. The data include pooled estimates of encounter rates per 3 hour interval collated from Moore et al. 2016 ("PreyTrapped", "PredatorsTrapped"), and subsequent calculations to yield encounter rates per day ("Prey.per.Day", "Pred.per.Day") and per time step ("Prey.per.t", "Pred.per.t"), as well as encounter probabilities per time step ("ProbEncPrey.per.t", "ProbEncPred.per.t").
DOI: 10.5061/dryad.959g2/4
title: R Code for Dynamic Model of Sit-and-Wait Foragers

description: This file contains R code for the dynamic model used to determine whether temporal variation in predation risk favors daily patterns of foraging behavior in a sit-and-wait predator. This file was created using R v3.4.1. Additional versions of the model code (i.e., those used to plot effects of various model parameters) are available by request.
DOI: 10.5061/dryad.959g2/5
title: R Code for Dynamic Model of Searching Foragers

description: This file contains R code for an extension of our dynamic model that considers scenarios in which foragers must actively search for prey to attack. The R code was produced in R v.3.4.1.
DOI: 10.5061/dryad.b2t42/1
title: Glucosinolate data

description: A spreadsheet with glucosinolate data for individual samples, identified by genotype, subspecies, site, and tissue.
DOI: 10.5061/dryad.b2t42/2
title: Ambient Herbivory dataset

description: A spreadsheet of individuals in three common gardens, showing levels of ambient herbivory on three tissues and fruit number for each individual.
DOI: 10.5061/dryad.b2t42/3
title: Glucosinolates and herbivory

description: A spreadsheet of family ls means for glucosinolate traits and herbivore damage on three tissues.
DOI: 10.5061/dryad.b2t42/4
title: Clipping dataset

description: A spreadsheet of data for endogenous plants, indicating which treatment plants were assigned (which tissue was removed) and fruit number.
DOI: 10.5061/dryad.dg58v/1
title: Egg_Phenotypes_Cisticolidae

description: This file provides standardized values for ten phenotypic attributes (five pattern, four color, one luminance) from the Cisticolidae family.
DOI: 10.5061/dryad.dg58v/2
title: Egg_Phenotypes_Ploceidae

description: This file provides standardized values for ten phenotypic attributes (five pattern, four color, one luminance) from the Ploceidae family.
DOI: 10.5061/dryad.dv1gq/1
title: Data_and_code

description: The file contains:  - The R-code: (1) to load a plant-pollinator network, (2) to calculate the raw NODF as in Almeida-Neto et al. (Oikos 117, 2008), (3) the maximum NODF value that can be reached by a network with given connectance and size (using a greedy algorithm as explained in the manuscript), and (4) the combined NODF statistic as described in the manuscript (NODF divided by the product of maximum NODF, connectance, and the log of the geometric mean of plants and pollinators).  - Note that we are providing a simple example of a binary network. In the manuscript we used the 59 plant-pollinator networks downloaded from the Web of Life database (www.web-of-life.es): M_PL_001 to M_PL_059.  - The temperature seasonality (variance of daily temperature) for 43 plant-pollinator networks for which we found information about latitude and longitude. Environmental data were downloaded from the public repository WorldClim version 1.4, release 3, resolution 2.5 min.
DOI: 10.5061/dryad.ff7mq/1
title: Offspring genotypes from Hoxa1B1 and Control lineage heterozygous breeding cages.

description: File includes counts of offspring genotypes with three genotypes per breeding cage provided. Each line of data being a single genotype.
DOI: 10.5061/dryad.ff7mq/2
title: Offspring genotypes from three populations in semi-natural OPA enclosures.

description: Three genotypes are reported per sampling with each line of data being a genotype.
DOI: 10.5061/dryad.ff7mq/3
title: Territorial occupation from three populations in semi-natural OPA enclosures.

description: Paired counts of territories held by Hoxa1B1 and control male founders. “Territories held” is the number of individual territories held at a given time by a treatment. “Total territories occupied” represents the number of territories (maximum of six) held collectively by both treatments at a given sampling period.
DOI: 10.5061/dryad.gk15b/1
title: Supplementary dataset 1

description: The number of eggs laid on the web or on the leaf surface by each replicate in Exp. 1.
DOI: 10.5061/dryad.gk15b/2
title: Supplementary dataset 2

description: The number of eggs laid on the web or on the leaf surface by each replicate in Exp. 2.
DOI: 10.5061/dryad.gk15b/3
title: Supplementary dataset 3

description: The number of eggs laid on the web or on the leaf surface by each replicate in Exp. 3.
DOI: 10.5061/dryad.kp0mc/1
title: Leaf area and seed mass

description: Data collected for over 400 plant annual species. Includes measurements on leaf area and seed mass. It also includes measurements taken from literature such as plant height and Ellenberg indicator values (EIV) for nitrogen and light. The average is shown for leaf and seed mass. We also include the sample size for leaf area (nla) and seed mass (nsm).
DOI: 10.5061/dryad.mr556/1
title: Aerodynamic loads

description: Aerodynamic loads for all tested wings
DOI: 10.5061/dryad.pc539/1
title: Detection_and_Covariate

description: Leopard detection history and covariates used for model building.
DOI: 10.5061/dryad.pc539/2
title: attack_interviews

description: Details of human attacks by leopards and activity of the person before attacks.  NOTE: Geographic coordinates of attack location were removed to protect individual's identity, and because Panthera pardus is a vulnerable species. To obtain these values, please contact Aritra Kshettry
DOI: 10.5061/dryad.pc539/3
title: Leopard_attacks_victims

description: Details of all leopard attacks within study area. Month, Year and location of village where attack occurred. NOTE: Geographic coordinates of attack location were removed to protect individual's identity, and because Panthera pardus is a vulnerable species. To obtain these values, please contact Aritra Kshettry
DOI: 10.5061/dryad.r2n70/38
title: Protopterus aethiopicus transcriptome
DOI: 10.5061/dryad.r2n70/39
title: Raja clavata transcriptome
DOI: 10.5061/dryad.r2n70/40
title: Rhinatrema bivittatum transcriptome
DOI: 10.5061/dryad.r2n70/41
title: Scyliorhinus canicula transcriptome
DOI: 10.5061/dryad.r2n70/42
title: Tarentola mauritanica transcriptome
DOI: 10.5061/dryad.r2n70/43
title: Typhlonectes compressicauda transcriptome
DOI: 10.5061/dryad.r86pk/1
title: Vellekoop et al Supplementary dataset S1

description: organic geochemical data San Ramón section
DOI: 10.5061/dryad.r86pk/2
title: Vellekoop et al Supplementary dataset S2

description: palynological data San Ramón section
DOI: 10.5061/dryad.r86pk/3
title: Vellekoop et al Paleontology Supporting Information

description: list of encountered dinocyst taxa
DOI: 10.5061/dryad.rk491/10
title: Ion_Torrent_filtered_outputF

description: Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 6.
DOI: 10.5061/dryad.rk491/11
title: Ion_Torrent_filtered_outputG

description: Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 7.
DOI: 10.5061/dryad.rk491/12
title: Ion_Torrent_processed_output_alignments_scripts

description: Scripts used to process Ion Torrent data, the filtered SNP report used to construct consensus sequences, an overview of the number of reads in total and per marker and/or individual, nuclear DNA sequence alignments and nuclear DNA data in genotypic format.
DOI: 10.5061/dryad.rk491/13
title: input_output_StructureA

description: Files associated with the Structure analysis, part 1
DOI: 10.5061/dryad.rk491/14
title: input_output_StructureB

description: Files associated with the Structure analysis, part 2
DOI: 10.5061/dryad.rk491/15
title: input_output_StructureC

description: Files associated with the Structure analysis, part 3
DOI: 10.5061/dryad.rk491/16
title: Input_output_other_analyses

description: Files associated with the remaining analyses.
DOI: 10.5061/dryad.rk491/8
title: Ion_Torrent_filtered_outputD

description: Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 4.
DOI: 10.5061/dryad.rk491/9
title: Ion_Torrent_filtered_outputE

description: Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 5.
DOI: 10.5061/dryad.sg46n/1
title: Raw qPCR data for  queens and workers
DOI: 10.5061/dryad.v8bn7/1
title: SNP_Alignment_TNP_Bcbva_Chromosome

description: Alignment of variant sites of chromosomal Bcbva sequences from TNP (Côte d’Ivoire, n=124) and Grebo (Liberia, n=2). One sequence per host hosts (mammals/flies, two divergent isolates for fly 600) was included and the final alignment of variant sites is 298bp long.
DOI: 10.5061/dryad.v8bn7/2
title: SNP_Alignment_TNP_Bcbva_pXO1

description: Alignment of variant sites of Bcbva plasmid pXO1 sequences from TNP (Côte d’Ivoire, n=124) and Grebo (Liberia, n=2). One sequence per host hosts (mammals/flies, two divergent isolates for fly 600) was included and the final alignment of variant sites is 18bp long.
DOI: 10.5061/dryad.v8bn7/3
title: SNP_Alignment_TNP_Bcbva_pXO2

description: Alignment of variant sites of Bcbva plasmid pXO2 sequences from TNP (Côte d’Ivoire, n=124) and Grebo (Liberia, n=2). One sequence per host hosts (mammals/flies, two divergent isolates for fly 600) was included and the final alignment of variant sites is 11bp long.
DOI: 10.5061/dryad.v8bn7/4
title: SNP_Alignment_sub-Saharan_Africa_Bcbva_Chromosome

description: Alignment of variant sites of chromosomal Bcbva sequences from Côte d'Ivoire (CI), Cameroon (CAM), Liberia (505-4 and 506-4) and CAR (363-2 and 364-1). The final alignment of variant sites is 1016bp long.
DOI: 10.5061/dryad.vk29h/1
title: Niche breadth data

description: Niche breadth data on guanaco and sheep and explanatory variables, on 15 sectors on Torres del Paine National Park
DOI: 10.5061/dryad.018pt/1
title: Behavioural and survival data of rock pigeons

description: This folder contains behavioural and survival data for the article "Organizing effects of adverse early-life condition on body mass, compensatory growth and reproduction: experimental studies in rock pigeons"
DOI: 10.5061/dryad.10g95/10
title: SL_ms_final_results_Supp_info_correlations_TableS2

description: Copy of SPSS analyses for Results Section ESM TABLE 2
DOI: 10.5061/dryad.10g95/2
title: SL_ms_final_results_a_baseline_cooperation copy

description: Copy of SPSS analyses for Results section A
DOI: 10.5061/dryad.10g95/3
title: SL_ms_final_results_b_social_learning_and_cooperation

description: Copy of SPSS analyses for Results Section B
DOI: 10.5061/dryad.10g95/4
title: SL_ms_final_results_c_using_social_information

description: Copy of SPSS analyses for Results Section C
DOI: 10.5061/dryad.10g95/5
title: SL_ms_final_results_d_mechanisms_of_social_learning

description: Copy of SPSS analyses for Results Section D
DOI: 10.5061/dryad.10g95/6
title: SL_ms_final_results_e_learning_about_people_or_about_payoffs

description: Copy of SPSS analyses for Results Section E
DOI: 10.5061/dryad.10g95/7
title: SL_ms_final_results_f_alternative_tests

description: Copy of SPSS analyses for Results Section F
DOI: 10.5061/dryad.10g95/8
title: SL_ms_final_results_Si_ESM

description: Copy of SPSS analyses for Results Section ESM
DOI: 10.5061/dryad.1j4f2/1
title: chemical data

description: Raw data for chemical compound concentration in leaves and roots. Columns titled "total_Lph" etc., show total concentration of each compound class. "Lph", etc., are standardised values (a mean of 0 and variance of 1) to place them on similar scale for analysis.
DOI: 10.5061/dryad.1j4f2/2
title: noplotc_MCMC

description: Bayesian posterior distribution of G matrix.
DOI: 10.5061/dryad.1j4f2/3
title: Ped_ctrl

description: Pedigree information for control (herbivore) populations.
DOI: 10.5061/dryad.1j4f2/4
title: Ped_spray

description: Pedigree information for spray (no-herbivore) populations.
DOI: 10.5061/dryad.1j4f2/5
title: microsatelite genotyping data

description: Microsatelite data for genotyping plants in the clone library from field selection experiment.
DOI: 10.5061/dryad.1m528/11
title: LS_MHD_echoes_PART_1
DOI: 10.5061/dryad.1m528/12
title: LS_MHD_echoes_PART_2
DOI: 10.5061/dryad.1m528/13
title: Template_Dataset_and_Labels
DOI: 10.5061/dryad.1m528/2
title: Pulseprogram_files
DOI: 10.5061/dryad.1m528/9
title: 12-14month_old_mice
DOI: 10.5061/dryad.47n27/1
title: Micro-CT scan tiff images of Avalofractus abaculus (Rangeomorpha) cast ROM 63005 folder 1

description: Micro-CT tiff files. Original data suitable for reconstruction of a volume rendering. Folder 1.
DOI: 10.5061/dryad.47n27/2
title: Micro-CT scan tiff images of Avalofractus abaculus (Rangeomorpha) cast ROM 63005 folder 2

description: Micro-CT tiff files. Original data suitable for reconstruction of a volume rendering. Folder 2.
DOI: 10.5061/dryad.47n27/3
title: Micro-CT scan tiff images of Avalofractus abaculus (Rangeomorpha) cast ROM 63005 folder 3

description: Micro-CT tiff files. Original data suitable for reconstruction of a volume rendering. Folder 3.
DOI: 10.5061/dryad.4c14n/1
title: Response angles and binary scores

description: The excel file contains three spreadsheets. The first sheet includes data from both species and only data from the present study. The other two sheets include data for each species separately and reanalyzed data from previous studies for the null expectation. The abbreviations used for each species are Hcin for Hyla cinerea and Hch for Hyla chrysoscelis. For the stimulus column, N, A1, A2, and A3 are the stimuli used in the present study; null is the sham condition tested in previous studies in which no sound was played back.
DOI: 10.5061/dryad.519d0/1
title: model2.8B

description: Scripts can be run by modifying RRSmodel.R to set the working directory. Parameters used
in the manuscript have been entered into RRSmodel.R. However, the values can be modified
to test other parameter values as desired. The script will write files to a directory called 
'output' that must be in the working directory. The 'source' directory and its contents
must also be in the working directory.
DOI: 10.5061/dryad.6tc06/1
title: DatasetS1 - Sequence alignment

description: Concatenated alignment of six genes used for phylogenetic analysis along with best-fit partitioning scheme
DOI: 10.5061/dryad.6tc06/2
title: DatasetS2 - Synthetic phylogeny

description: Synthetic tree file
DOI: 10.5061/dryad.6tc06/3
title: DatasetS3 - Maximum likelihood phylogeny

description: Time-calibrated, maximum likelihood molecular phylogeny.
DOI: 10.5061/dryad.6tc06/4
title: DatasetS4 - Bootstrap phylogenies

description: Time-calibrated bootstrap phylogenies (N=1000)
DOI: 10.5061/dryad.6tc06/5
title: TableS1 - GenBank numbers

description: GenBank accession numbers for all genes used in molecular phylogenetic analysis. Sequences new to this study are in bold
DOI: 10.5061/dryad.6tc06/6
title: TableS2 - Habitat and range size data

description: Habitat assignments and log10 range size for taxa in the synthetic tree. Taxa without any data are excluded.
DOI: 10.5061/dryad.6tc06/7
title: FileS1 - R scripts

description: R scripts used to execute the state-dependent diversification analyses and model adequacy tests.
DOI: 10.5061/dryad.6tc06/8
title: FileS2 - treePL config file

description: Configuration file with fossil calibrations used in treePL
DOI: 10.5061/dryad.7fj5q/1
title: file_adolescents_dryad_V2

description: data used study adolescents
DOI: 10.5061/dryad.800tj/1
title: Table S6. Human Gene Count Data

description: Gene counts obtained by alignment against the ENSEMBL GRCh38 human genome build are listed. Genes and associated ENSEMBL ID are listed in rows and subjects are grouped by columns.
DOI: 10.5061/dryad.800tj/2
title: Supplemental Methods, Tables and Figures

description: Detailed methods as well as supplemental tables and figures.
DOI: 10.5061/dryad.863r3/1
title: PONE_D_16_49580R_FTC

description: The Dataset is available in the SPSS format and each variable contains a description.
DOI: 10.5061/dryad.8gg2p/1
title: microsatellites_Mona_passage
DOI: 10.5061/dryad.8gg2p/2
title: 54_individuals_10059_snps_Mona_passage

description: 10059 SNPs of 54 Opistognathus aurifrons
DOI: 10.5061/dryad.8h067/10
title: Supplemental data 6

description: 3D data of a Medusaceratops postorbital (ROM 73831, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.8h067/11
title: Supplemental data 7

description: 3D data of a Medusaceratops postorbital (WDC-DJR-003, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.8h067/12
title: Supplemental data 8

description: Thin section photograph of mid diaphyseal cross-section of a Medusaceratops tibia (ROM 67873) with plane polarized light (JPG file).
DOI: 10.5061/dryad.8h067/13
title: Supplemental data 9

description: Thin section photograph of mid diaphyseal cross-section of a Medusaceratops tibia (ROM 67873) with cross polarized light (JPG file).
DOI: 10.5061/dryad.8h067/9
title: Supplemental data 5

description: 3D data of a Medusaceratops postorbital (ROM 73834, STL file). The model is scaled in meters.
DOI: 10.5061/dryad.8m0q0/1
title: Electronic Appendix 1

description: Source information, trait data, and environmental metrics used in this study.
DOI: 10.5061/dryad.8m1nf/1
title: Tracking data for submission

description: Latitude and longitude of gannets tracked with GPS loggers. Data are split by group (breeder, failed breeder and immature), as well as sex and year.
DOI: 10.5061/dryad.8mv2j.1
title: Data from: Natural and anthropogenic sounds reduce song performance: insights from two emberizid species
DOI: 10.5061/dryad.8mv2j.2
title: Data from: Natural and anthropogenic sounds reduce song performance: insights from two emberizid species
DOI: 10.5061/dryad.8mv2j.2/1.2
title: Chipping sparrow song means
DOI: 10.5061/dryad.8mv2j.2/2.2
title: Chipping sparrow song performance script
DOI: 10.5061/dryad.8mv2j.2/3.2
title: White-crowned sparrow song means
DOI: 10.5061/dryad.8mv2j.2/4.2
title: White-crowned sparrow song performance script
DOI: 10.5061/dryad.c3h4v/1
title: Coordinates_galeata_bokermanni

description: To determine occurrence points for the study species, we used the data sources available on the website of the Global Biodiversity Information Facility (GBIF; http://www.gbif.org/). Additional data came from observational data entered into eBird (http://http://ebird.org) and from Xeno-Canto platform, which compiles bird sounds data (http://xeno-canto.org).
DOI: 10.5061/dryad.gk15b/4
title: Supplementary dataset 4

description: The number of eggs laid on the web or on the leaf surface by each replicate in Exp. 4.
DOI: 10.5061/dryad.kt136/1
title: Sacramento River Fall-run Production

description: This data set contains yearly production values (estimated escapement abundances plus in-river and ocean harvests) of Sacramento River Fall-run Chinook salmon for 1952-2010.  The Sacramento River Fall-run Chinook is an aggregate stock consisting of five populations associated with different tributaries of the Sacramento River:  Battle Creek, the Sacramento River mainstem, Feather River, Yuba River, and American River.  Data were previously available as part of the Central Valley ChinookProd data set, maintained by the US Fish and Wildlife Service Anadromous Fish Restoration Program (https://www.fws.gov/lodi/anadromous_fish_restoration/afrp_index.htm).  These specific data are no longer available online, but are presented here in the format used for analyses in the manuscript.  Note that analyzed data includes years 1957-2010.
DOI: 10.5061/dryad.mr556/10
title: P1-4 wing spanwise

description: PIV measurements of the P1-4 wing at all tested angles of attack
DOI: 10.5061/dryad.mr556/2
title: Complete wing chordwise z=0.25

description: PIV measurements of the complete wing at z=0.25 at all tested angles of attack
DOI: 10.5061/dryad.mr556/3
title: Complete wing chordwise z=0.5

description: PIV measurements of the complete wing at z=0.5 at all tested angles of attack
DOI: 10.5061/dryad.mr556/4
title: Complete wing chordwise z=0.75

description: PIV measurements of the complete wing at z=0.75 at all tested angles of attack
DOI: 10.5061/dryad.mr556/5
title: P1-4 wing chordwise z=0.25

description: PIV measurements of the P1-4 wing at z=0.25 at all tested angles of attack
DOI: 10.5061/dryad.mr556/6
title: P1-4 wing chordwise z=0.5

description: PIV measurements of the P1-4 wing at z=0.5 at all tested angles of attack
DOI: 10.5061/dryad.mr556/7
title: P10 wing chordwise z=0.5

description: PIV measurements of the P10 wing at z=0.5 at all tested angles of attack
DOI: 10.5061/dryad.mr556/8
title: P10 wing chordwise z=0.75

description: PIV measurements of the P10 wing at z=0.75 at all tested angles of attack
DOI: 10.5061/dryad.mr556/9
title: Complete wing spanwise

description: PIV measurements of the complete wing at all tested angles of attack
DOI: 10.5061/dryad.nb115/1
title: SDM Variables Part 1

description: part 1 of the input files for SDM creation.
DOI: 10.5061/dryad.nb115/2
title: SDM Variables Part 2

description: part 2 of the input files for SDM creation.
DOI: 10.5061/dryad.nb115/3
title: SDM Variables Part 3

description: part 3 of the input files for SDM creation.
DOI: 10.5061/dryad.nb115/4
title: Sora mrange files

description: Zip file of the Sora mrange files
DOI: 10.5061/dryad.nb115/5
title: Virginia Rail mrange files

description: Virginia Rail mrange files
DOI: 10.5061/dryad.nb115/6
title: Yellow Rail mrange files

description: Yellow Rail mrange files
DOI: 10.5061/dryad.nb115/8
title: Intermediate Files

description: Intermediate Files from the data cleaning, SDM and assignment process.
DOI: 10.5061/dryad.r9k5f/1
title: Raw data

description: Raw data