cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8073707
title: Additional file 11: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

description: Comparison of SNP array and GBS data error rate. The total number of Axiom™ 70 K Pear Genotyping Array and GBS-based SNP markers segregating in a backcross manner in the P493 population are reported. The total numbers of data points and erroneous data points were counted in 16 offspring for each segregation type. The total numbers of heterozygous × homozygous (Het × Homo) and homozygous × heterozygous (Homo × Het) segregation types were calculated for both Axiom and GBS SNPs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073707.v1
title: Additional file 11: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

description: Comparison of SNP array and GBS data error rate. The total number of Axiom™ 70 K Pear Genotyping Array and GBS-based SNP markers segregating in a backcross manner in the P493 population are reported. The total numbers of data points and erroneous data points were counted in 16 offspring for each segregation type. The total numbers of heterozygous × homozygous (Het × Homo) and homozygous × heterozygous (Homo × Het) segregation types were calculated for both Axiom and GBS SNPs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073701
title: Additional file 10: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

description: Statistics about the parental genetic maps of the F1 population P16.009. The number of markers, the length in cM, the average distance between markers (in cM) and the length of the largest gap (in cM) are reported for each Linkage Group (LG) and for the two maps. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073701.v1
title: Additional file 10: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

description: Statistics about the parental genetic maps of the F1 population P16.009. The number of markers, the length in cM, the average distance between markers (in cM) and the length of the largest gap (in cM) are reported for each Linkage Group (LG) and for the two maps. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073635
title: Additional file 5: of Growth charts for patients with Sanfilippo syndrome (Mucopolysaccharidosis type III)

description: Table S1. Number of measurements for male and female patients for height, weight and head circumference in relation to the age groups (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073635.v1
title: Additional file 5: of Growth charts for patients with Sanfilippo syndrome (Mucopolysaccharidosis type III)

description: Table S1. Number of measurements for male and female patients for height, weight and head circumference in relation to the age groups (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8073602
title: Additional file 2 of MiStImm: an agent-based simulation tool to study the self-nonself discrimination of the adaptive immune response

description: Data of sensitivity analysis. Results of sensitivity analysis of input parameters. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.8073602.v1
title: Additional file 2 of MiStImm: an agent-based simulation tool to study the self-nonself discrimination of the adaptive immune response

description: Data of sensitivity analysis. Results of sensitivity analysis of input parameters. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.8073560
title: Additional file 1: of Inherited ichthyoses: molecular causes of the disease in Czech patients

description: Table S1. Patients’ clinical findings. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8073560.v1
title: Additional file 1: of Inherited ichthyoses: molecular causes of the disease in Czech patients

description: Table S1. Patients’ clinical findings. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8073542
title: Additional file 1: of Parkinsonâ s disease-associated LRRK2-G2019S mutant acts through regulation of SERCA activity to control ER stress in astrocytes

description: Table S1. List of LRRK2 interacting proteins, Related Figure 3. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8073542.v1
title: Additional file 1: of Parkinsonâ s disease-associated LRRK2-G2019S mutant acts through regulation of SERCA activity to control ER stress in astrocytes

description: Table S1. List of LRRK2 interacting proteins, Related Figure 3. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8073494
title: MOESM4 of CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry

description: Additional file 4: Table S2. Summary of analyses of CRISPR/Cas and wild-type ‘Calypso’ and ‘Hawaii 4’ shoot lines and samples. Sample entries for shoot lines/shoots/samples are pattern and colour coded: solid green, pale green or pale brown shading = green, pale green or off-white tissue, respectively; mottled shading = variegated tissue; no shading = white tissue. Results of PCR screening for presence of T-DNA Nos-Kan cassette and sgRNA insertion are indicated by ‘+’ (amplification of expected product) or ‘-’ (no product). Sequence results obtained for TAIL PCR reactions are indicated by ‘+’; ‘---’ = not done; F - failed sequence analysis. % wild type (WT) reads are shown for target site amplicon sequences: bold font for % WT reads and asterisks highlight results which may be unexpected in relation to observed phenotype. Mutant sequence variant type and putative allele status are shown for each sample.
DOI: 10.6084/m9.figshare.8073494.v1
title: MOESM4 of CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry

description: Additional file 4: Table S2. Summary of analyses of CRISPR/Cas and wild-type ‘Calypso’ and ‘Hawaii 4’ shoot lines and samples. Sample entries for shoot lines/shoots/samples are pattern and colour coded: solid green, pale green or pale brown shading = green, pale green or off-white tissue, respectively; mottled shading = variegated tissue; no shading = white tissue. Results of PCR screening for presence of T-DNA Nos-Kan cassette and sgRNA insertion are indicated by ‘+’ (amplification of expected product) or ‘-’ (no product). Sequence results obtained for TAIL PCR reactions are indicated by ‘+’; ‘---’ = not done; F - failed sequence analysis. % wild type (WT) reads are shown for target site amplicon sequences: bold font for % WT reads and asterisks highlight results which may be unexpected in relation to observed phenotype. Mutant sequence variant type and putative allele status are shown for each sample.
DOI: 10.6084/m9.figshare.8073476
title: Additional file 2: of Social network analysis to characterize women victims of violence

description: Centrality Index Values for each node. Betweeness and closeness indexes for diagnoses and traumas considered in the SNA procedure. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8073476.v1
title: Additional file 2: of Social network analysis to characterize women victims of violence

description: Centrality Index Values for each node. Betweeness and closeness indexes for diagnoses and traumas considered in the SNA procedure. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8073470
title: Additional file 1: of Social network analysis to characterize women victims of violence

description: ICD9-CM codes for selected violence diagnoses, other groups of diagnoses and trauma groups. List of diagnosis and traumas used in the SNA procedure. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8073470.v1
title: Additional file 1: of Social network analysis to characterize women victims of violence

description: ICD9-CM codes for selected violence diagnoses, other groups of diagnoses and trauma groups. List of diagnosis and traumas used in the SNA procedure. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8073449
title: MOESM3 of Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

description: Additional file 3. Top 50 up- and down-regulated probes in spleen and head kidney. Differentially top 5o regulated probes are marked in bold.
DOI: 10.6084/m9.figshare.8073449.v1
title: MOESM3 of Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

description: Additional file 3. Top 50 up- and down-regulated probes in spleen and head kidney. Differentially top 5o regulated probes are marked in bold.
DOI: 10.6084/m9.figshare.8073428
title: Additional file 6: of Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2

description: Table S2. GenePattern gene set expression analysis (GSEA) PAPP-A/SNAI1/COL1A1 gene signature: complete data on GSEA in PAPP-A/SNAI1/COL1A1-low patient group. Data represents the downregulated pathways in the PAPP-A/SNAI1/COL1A1-low patient group. Each row is one gene ontology term, and each column is as labeled. (XLS 64 kb)
DOI: 10.6084/m9.figshare.8073419
title: Additional file 1: of Prospective international multicenter observational study of NovosynÂŽ Quick for skin closures in adults and children (SKINNOQ)

description: Dataset Description: Data 2. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8073422
title: Additional file 5: of Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2

description: Table S1. LIMMA differential gene expression analysis PAPP-A/SNAI1/COL1A1 gene signature: complete data on differential gene expression analysis on PAPP-A/SNAI1/COL1A1-high vs. PAPP-A/SNAI1/COL1A1-low patient groups. Each row is one gene (indicated by each probe used), and each column is as labeled. (XLS 9760 kb)
DOI: 10.6084/m9.figshare.8073428.v1
title: Additional file 6: of Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2

description: Table S2. GenePattern gene set expression analysis (GSEA) PAPP-A/SNAI1/COL1A1 gene signature: complete data on GSEA in PAPP-A/SNAI1/COL1A1-low patient group. Data represents the downregulated pathways in the PAPP-A/SNAI1/COL1A1-low patient group. Each row is one gene ontology term, and each column is as labeled. (XLS 64 kb)
DOI: 10.6084/m9.figshare.8073419.v1
title: Additional file 1: of Prospective international multicenter observational study of NovosynÂŽ Quick for skin closures in adults and children (SKINNOQ)

description: Dataset Description: Data 2. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8073422.v1
title: Additional file 5: of Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2

description: Table S1. LIMMA differential gene expression analysis PAPP-A/SNAI1/COL1A1 gene signature: complete data on differential gene expression analysis on PAPP-A/SNAI1/COL1A1-high vs. PAPP-A/SNAI1/COL1A1-low patient groups. Each row is one gene (indicated by each probe used), and each column is as labeled. (XLS 9760 kb)
DOI: 10.6084/m9.figshare.8073281
title: MOESM5 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 5. Significantly enriched pathways for differentially expressed genes between PC9GR cells and PC9 cells.
DOI: 10.6084/m9.figshare.8073281.v1
title: MOESM5 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 5. Significantly enriched pathways for differentially expressed genes between PC9GR cells and PC9 cells.
DOI: 10.6084/m9.figshare.8073272
title: MOESM4 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 4. Differentially expressed genes in PC9 cells and PC9GR cells.
DOI: 10.6084/m9.figshare.8073272.v1
title: MOESM4 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 4. Differentially expressed genes in PC9 cells and PC9GR cells.
DOI: 10.6084/m9.figshare.8073251
title: MOESM2 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 2. Differentially expressed genes in PC9GR cells after treatment with apatinib.
DOI: 10.6084/m9.figshare.8073242
title: MOESM1 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 1. Differentially expressed genes in PC9 cells before and after treatment with apatinib.
DOI: 10.6084/m9.figshare.8073251.v1
title: MOESM2 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 2. Differentially expressed genes in PC9GR cells after treatment with apatinib.
DOI: 10.6084/m9.figshare.8073242.v1
title: MOESM1 of Apatinib preferentially inhibits PC9 gefitinib-resistant cancer cells by inducing cell cycle arrest and inhibiting VEGFR signaling pathway

description: Additional file 1. Differentially expressed genes in PC9 cells before and after treatment with apatinib.
DOI: 10.6084/m9.figshare.8073221
title: MOESM6 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 6: Table S5. The results of pair-wise differential expression analysis of samples in each group using Cuffdiff. Three comparisons are presented: C vs RAA; C vs RAC, RAA vs RAC. At the transcript-level 148 differential expressed units were identified (q-valuesâ
DOI: 10.6084/m9.figshare.8073215
title: MOESM5 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 5: Table S4. The results of the functional enrichment analyses performed with the Enrichr tool. WikiPathways, GO Biological processes, ChEA and GeneAtlas categories for the up- and downregulated genes in response to IA-rupture are included. The table consists of an enriched term, the number of input genes in the pathway (overlap), the p value (pâ
DOI: 10.6084/m9.figshare.8073221.v1
title: MOESM6 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 6: Table S5. The results of pair-wise differential expression analysis of samples in each group using Cuffdiff. Three comparisons are presented: C vs RAA; C vs RAC, RAA vs RAC. At the transcript-level 148 differential expressed units were identified (q-valuesâ
DOI: 10.6084/m9.figshare.8073206
title: MOESM4 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 4: Table S3. ANOVA results of expression profiling of transcripts regulated in response to IA rupture in peripheral blood. A table summarizing the results of the one-way ANOVA (FDRâ
DOI: 10.6084/m9.figshare.8073215.v1
title: MOESM5 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 5: Table S4. The results of the functional enrichment analyses performed with the Enrichr tool. WikiPathways, GO Biological processes, ChEA and GeneAtlas categories for the up- and downregulated genes in response to IA-rupture are included. The table consists of an enriched term, the number of input genes in the pathway (overlap), the p value (pâ
DOI: 10.6084/m9.figshare.8073206.v1
title: MOESM4 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 4: Table S3. ANOVA results of expression profiling of transcripts regulated in response to IA rupture in peripheral blood. A table summarizing the results of the one-way ANOVA (FDRâ
DOI: 10.6084/m9.figshare.8073194
title: MOESM2 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 2: Table S2. The specific IA-altered transcriptional variants of genes used for L/MN index calculation. The L/MN index was calculated as the ratio of the mean folds of standardized expression levels of lymphocyte-related genes (BCL11B, CCR7, CD2, CD27, CD3D, CD3E, CD8A, and KLRB1) to those of monocyte-and-neutrophil-related genes (ANXA3, ARG1, CD14, GYG1, FCGR1A, FCGR2A, IRAK3, and MMP9). L = lymphocyte-specific gene; M = monocyte-specific gene.
DOI: 10.6084/m9.figshare.8073185
title: MOESM1 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 1: Table S1. Validation of different biotypes of transcriptional variants regulated in response to IA rupture. Selected transcriptional variants (from the list included in Additional file 4: Table S3) were validated by using qPCR. The results are presented as the fold change with respect to the control group with a standard error of the mean (nâ =â 10 to 14). Significant differences in the main effects from one-way ANOVA for the clinical status factor.
DOI: 10.6084/m9.figshare.8073194.v1
title: MOESM2 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 2: Table S2. The specific IA-altered transcriptional variants of genes used for L/MN index calculation. The L/MN index was calculated as the ratio of the mean folds of standardized expression levels of lymphocyte-related genes (BCL11B, CCR7, CD2, CD27, CD3D, CD3E, CD8A, and KLRB1) to those of monocyte-and-neutrophil-related genes (ANXA3, ARG1, CD14, GYG1, FCGR1A, FCGR2A, IRAK3, and MMP9). L = lymphocyte-specific gene; M = monocyte-specific gene.
DOI: 10.6084/m9.figshare.8073185.v1
title: MOESM1 of Systemic response to rupture of intracranial aneurysms involves expression of specific gene isoforms

description: Additional file 1: Table S1. Validation of different biotypes of transcriptional variants regulated in response to IA rupture. Selected transcriptional variants (from the list included in Additional file 4: Table S3) were validated by using qPCR. The results are presented as the fold change with respect to the control group with a standard error of the mean (nâ =â 10 to 14). Significant differences in the main effects from one-way ANOVA for the clinical status factor.
DOI: 10.6084/m9.figshare.8073029
title: Additional file 1: of Deaths, injuries and detentions during civil demonstrations in Sudan: a secondary data analysis

description: Authors' R statistical analysis code for three-list capture-recapture analysis. (R 17 kb)
DOI: 10.6084/m9.figshare.8073017
title: Additional file 9: of Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

description: Table S2. Newly sequenced genome assembly accession numbers (XLSX 5 kb)
DOI: 10.6084/m9.figshare.8073017.v1
title: Additional file 9: of Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

description: Table S2. Newly sequenced genome assembly accession numbers (XLSX 5 kb)
DOI: 10.6084/m9.figshare.8073029.v1
title: Additional file 1: of Deaths, injuries and detentions during civil demonstrations in Sudan: a secondary data analysis

description: Authors' R statistical analysis code for three-list capture-recapture analysis. (R 17 kb)
DOI: 10.6084/m9.figshare.8073011
title: Additional file 8: of Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

description: Table S1. Variable regions in groups C and D genomes, gene overview (XLSX 29 kb)
DOI: 10.6084/m9.figshare.8073008
title: Additional file 1: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S1. Flow cytometry mAbs and other staining dyes employed for multiparametric flow cytometry analyses. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8073002
title: Additional file 18: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S5. Differentially expressed genes induced by BO-112 in B16-OVA in vitro. B16-OVA cell line was incubated either with BO-112 or vehicle for 24 h and its RNA was genome wide analyzed with gene-expression microarrays. Genes were selected as significant using a B &gt; 0 cut-off. (XLSX 241 kb)
DOI: 10.6084/m9.figshare.8073008.v1
title: Additional file 1: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S1. Flow cytometry mAbs and other staining dyes employed for multiparametric flow cytometry analyses. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8073011.v1
title: Additional file 8: of Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

description: Table S1. Variable regions in groups C and D genomes, gene overview (XLSX 29 kb)
DOI: 10.6084/m9.figshare.8072996
title: Additional file 17: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S4. Top 30 Upstream Regulators predicted to promote the differentially expression profile induced by BO-112 intratumoral administration. Upstream Regulators from differentially expressed genes upon BO-112 intratumoral administration (selected as significant using a B &gt; 0 cut-off) were identified by Ingenuity Pathway Analysis. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8072990
title: Additional file 5: of A discourse network analysis of UK newspaper coverage of the â sugar taxâ debate before and after the announcement of the Soft Drinks Industry Levy

description: Network matrix data for the time period post Jan 2016. Network data exported from DNA software used in analysis for Fig. 4. (CSV 141 kb)
DOI: 10.6084/m9.figshare.8073002.v1
title: Additional file 18: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S5. Differentially expressed genes induced by BO-112 in B16-OVA in vitro. B16-OVA cell line was incubated either with BO-112 or vehicle for 24 h and its RNA was genome wide analyzed with gene-expression microarrays. Genes were selected as significant using a B &gt; 0 cut-off. (XLSX 241 kb)
DOI: 10.6084/m9.figshare.8072984
title: Additional file 16: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S3. Top canonical differentially regulated pathways induced by BO-112 intratumoral administration. Pathways from differentially expressed genes upon BO-112 intratumoral administration (selected as significant using a B-statistic cut-off B &gt; 0) were identified by Ingenuity Pathway Analysis. (XLS 35 kb)
DOI: 10.6084/m9.figshare.8072990.v1
title: Additional file 5: of A discourse network analysis of UK newspaper coverage of the â sugar taxâ debate before and after the announcement of the Soft Drinks Industry Levy

description: Network matrix data for the time period post Jan 2016. Network data exported from DNA software used in analysis for Fig. 4. (CSV 141 kb)
DOI: 10.6084/m9.figshare.8072981
title: Additional file 4: of A discourse network analysis of UK newspaper coverage of the â sugar taxâ debate before and after the announcement of the Soft Drinks Industry Levy

description: Network matrix data for the time period prior to Jan 2016. Network data exported from DNA software used in analysis for Fig. 3. (CSV 113 kb)
DOI: 10.6084/m9.figshare.8072984.v1
title: Additional file 16: of Immunotherapeutic effects of intratumoral nanoplexed poly I:C

description: Table S3. Top canonical differentially regulated pathways induced by BO-112 intratumoral administration. Pathways from differentially expressed genes upon BO-112 intratumoral administration (selected as significant using a B-statistic cut-off B &gt; 0) were identified by Ingenuity Pathway Analysis. (XLS 35 kb)