cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14325690
title: Numerical simulation on Bay of Bengal's response to cyclones using the Princeton ocean model

description: ABSTRACT This study used the Princeton ocean model (POM) which includes second-order turbulent closure scheme to investigate the fluid dynamics of the Bay of Bengal (BoB) in the upper ocean's response to a cyclone. The model uses an orthogonal curvilinear grid and 26 sigma levels in conformity with realistic bottom topography. The model is forced with wind and heat plus salinity fluxes as surface forcing to simulate the BoB's response during a cyclone. In order to provide the realistic cyclonic vortex the model as input, the synthetic cyclonic vortex is generated and superimposed on the QSCAT/NCEP blended ocean wind fields. Analyses of results show significant sea surface temperature (SST) cooling on both sides of the storm track. This cooling could be attributed to the strong cyclonic winds, surface divergence and upwelling. However, less commonly observed features such as a leftward bias in SST cooling due to the relatively slower motion of TC and southward moving coastal boundary currents are also reported in this study. Model SST is compared with the observed Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI) filled up SST for the evaluation of the model's performance. Moreover, not only sea surface cooling but subsurface warming due to intense downwelling and coastal jet parallel to the coast were also observed in the model's simulation. The mixed layer depth (MLD) variation is revealed by the model. MLD deepening due to the convergence of near surface flow at the periphery of the cyclone is observed; however, beneath the cyclone centre, in the direction of the track the upsloping of isotherms due to the surface divergence and upwelling causes the shoaling of the MLD. Modeled surface currents are compared with 5-day interval OSCAR (Ocean Surface Current Analyses - Real time) surface currents, which are not very coherent, though some of the important features like higher values of boundary layer currents are captured. However, strong near surface, asymmetrical responses such as divergent currents in the open oceanic region are reflected by the model but when the cyclone approaches the coast the current patterns do not show the right bias due to interaction with the coast.
DOI: 10.6084/m9.figshare.14325690.v1
title: Numerical simulation on Bay of Bengal's response to cyclones using the Princeton ocean model

description: ABSTRACT This study used the Princeton ocean model (POM) which includes second-order turbulent closure scheme to investigate the fluid dynamics of the Bay of Bengal (BoB) in the upper ocean's response to a cyclone. The model uses an orthogonal curvilinear grid and 26 sigma levels in conformity with realistic bottom topography. The model is forced with wind and heat plus salinity fluxes as surface forcing to simulate the BoB's response during a cyclone. In order to provide the realistic cyclonic vortex the model as input, the synthetic cyclonic vortex is generated and superimposed on the QSCAT/NCEP blended ocean wind fields. Analyses of results show significant sea surface temperature (SST) cooling on both sides of the storm track. This cooling could be attributed to the strong cyclonic winds, surface divergence and upwelling. However, less commonly observed features such as a leftward bias in SST cooling due to the relatively slower motion of TC and southward moving coastal boundary currents are also reported in this study. Model SST is compared with the observed Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI) filled up SST for the evaluation of the model's performance. Moreover, not only sea surface cooling but subsurface warming due to intense downwelling and coastal jet parallel to the coast were also observed in the model's simulation. The mixed layer depth (MLD) variation is revealed by the model. MLD deepening due to the convergence of near surface flow at the periphery of the cyclone is observed; however, beneath the cyclone centre, in the direction of the track the upsloping of isotherms due to the surface divergence and upwelling causes the shoaling of the MLD. Modeled surface currents are compared with 5-day interval OSCAR (Ocean Surface Current Analyses - Real time) surface currents, which are not very coherent, though some of the important features like higher values of boundary layer currents are captured. However, strong near surface, asymmetrical responses such as divergent currents in the open oceanic region are reflected by the model but when the cyclone approaches the coast the current patterns do not show the right bias due to interaction with the coast.
DOI: 10.6084/m9.figshare.14325692.v1
title: Inter-estuarine and temporal patterns of the fish assemblage of subtropical subestuaries along the Río de la Plata coast (Uruguay)

description: ABSTRACT Fish assemblages in subestuaries have been poorly studied worldwide. In order to evaluate the inter-estuarine and temporal variability of the ichthyofauna of subestuaries along the Uruguayan coast of the Río de la Plata (RdlP), the Pando, Solís Chico and Solís Grande systems were sampled between 2011 and 2013. Fish biomass, abundance, species richness and diversity indices were analysed, defining fish assemblages characterised by a few species and great abundance. Estuarine resident and freshwater species represented 55.5% of the fish assemblage according to estuarine use guilds. Species occurrence was similar in the three subestuaries, but the relative abundances differed among them. The analysed community parameters showed a decreasing trend from west to east along the Uruguayan coast. Highest diversity and fish abundance were recorded in the Pando system located in the proximities of an important spawning area in the inner RdlP estuary. In the Solís Grande subestuary occurred the lowest species richness and fish abundance. The Solís Chico was characterised as a transitional subsystem. All three subestuaries showed an increase in species richness and abundance during high temperature periods, probably related to the life cycle of the species sharing habitats between the RdlP and the coastal subestuaries. This study constitutes the first step in assessing the fish assemblage patterns in coastal ecosystems of the RdlP and an approach about the ecological role of the subestuaries in the southwest Atlantic Ocean.
DOI: 10.6084/m9.figshare.14325692
title: Inter-estuarine and temporal patterns of the fish assemblage of subtropical subestuaries along the Río de la Plata coast (Uruguay)

description: ABSTRACT Fish assemblages in subestuaries have been poorly studied worldwide. In order to evaluate the inter-estuarine and temporal variability of the ichthyofauna of subestuaries along the Uruguayan coast of the Río de la Plata (RdlP), the Pando, Solís Chico and Solís Grande systems were sampled between 2011 and 2013. Fish biomass, abundance, species richness and diversity indices were analysed, defining fish assemblages characterised by a few species and great abundance. Estuarine resident and freshwater species represented 55.5% of the fish assemblage according to estuarine use guilds. Species occurrence was similar in the three subestuaries, but the relative abundances differed among them. The analysed community parameters showed a decreasing trend from west to east along the Uruguayan coast. Highest diversity and fish abundance were recorded in the Pando system located in the proximities of an important spawning area in the inner RdlP estuary. In the Solís Grande subestuary occurred the lowest species richness and fish abundance. The Solís Chico was characterised as a transitional subsystem. All three subestuaries showed an increase in species richness and abundance during high temperature periods, probably related to the life cycle of the species sharing habitats between the RdlP and the coastal subestuaries. This study constitutes the first step in assessing the fish assemblage patterns in coastal ecosystems of the RdlP and an approach about the ecological role of the subestuaries in the southwest Atlantic Ocean.
DOI: 10.6084/m9.figshare.14325693
title: Looking at the soft-bottom around a coastal coral reef: the impact of terrigenous input on Polychaeta (Annelida) community

description: ABSTRACT Erosion on coral reefs produces fragments of the constructor organisms that are scattered all around, thus enlarging the reef boundaries. Statistical modelling approach was used to investigate whether the Polychaeta community around Sebastião Gomes reef (Abrolhos Bank, Brazil) is influenced equally by sediment characteristics and/or by position related to the reef, that are variables related to the terrigenous input influence. In July 2007, a period dominated by winds that resuspend fine sediment from the land to coastal reefs, sediment samples were taken on four transects perpendicular to the reef (S, W, N and E) and a total of 121 species of polychaetes were recorded. The most abundant species was the carnivorous Goniadides carolinae and the model selected for it approximates to the best models fitted for both total macrofauna and polychaete abundance. These models represented higher abundance in coarse carbonate sediments on windward reef faces, where there is almost no terrigenous sediment. On the other hand, the Polychaeta richness did not depend on the transects. Sebastião Gomes reef is one of the many coastal reefs from Abrolhos Bank, whose healthy is probably in danger because of the increase of mud related to human activities, as deforestation and, recently, mining waste.
DOI: 10.6084/m9.figshare.14325693.v1
title: Looking at the soft-bottom around a coastal coral reef: the impact of terrigenous input on Polychaeta (Annelida) community

description: ABSTRACT Erosion on coral reefs produces fragments of the constructor organisms that are scattered all around, thus enlarging the reef boundaries. Statistical modelling approach was used to investigate whether the Polychaeta community around Sebastião Gomes reef (Abrolhos Bank, Brazil) is influenced equally by sediment characteristics and/or by position related to the reef, that are variables related to the terrigenous input influence. In July 2007, a period dominated by winds that resuspend fine sediment from the land to coastal reefs, sediment samples were taken on four transects perpendicular to the reef (S, W, N and E) and a total of 121 species of polychaetes were recorded. The most abundant species was the carnivorous Goniadides carolinae and the model selected for it approximates to the best models fitted for both total macrofauna and polychaete abundance. These models represented higher abundance in coarse carbonate sediments on windward reef faces, where there is almost no terrigenous sediment. On the other hand, the Polychaeta richness did not depend on the transects. Sebastião Gomes reef is one of the many coastal reefs from Abrolhos Bank, whose healthy is probably in danger because of the increase of mud related to human activities, as deforestation and, recently, mining waste.
DOI: 10.6084/m9.figshare.14325696
title: Wave run-up on embayed beaches. Study case: Itapocorói Bay, Southern Brazil

description: ABSTRACT This paper presents a new approach for estimating run-up on embayed beaches based on a study of the microtidal coast of Itapocorói Bay, Southern Brazil using the surf similarity parameter and wave height at break location. The four step methodology involved: 1) direct wave measurement (34 days), wave run-up measurement (19 days at 7 points within the bay), measurement of bathymetry and beach topography in the entire bay; 2) tests on available formulae to calculate wave run-up; 3) use of the SWAN spectral wave model to simulate wave parameters at breaking at each wave run-up measurement point and; 4) development of a new formula/approach to assess wave run-up on embayed beaches (in both exposed and protected areas). During the experiments the significant wave height varied from 0.5 m to 3.01 m, the mean wave period from 2.79 s to 7.76 s (the peak period varied between 2.95 s and 17.18 s), the mean wave direction from 72.5° to 141.9° (the peak direction varied from 39.2° to 169.8°) and the beach slope (tan β) from 0.041 to 0.201. The proposed formula is in good agreement with measured data for different wave conditions and varying degrees of protection. The analysis demonstrates that although R² varies from 0.52 to 0.75, the wave run-up distribution over the measurements agreed well with the proposed model, as shown by quantile-quantile analysis (R²=0.98 to 0.99). The errors observed in individual cases may be related to errors of measurements, modeling and to non-linear processes in the swash zone, such as infragavity waves.
DOI: 10.6084/m9.figshare.14325696.v1
title: Wave run-up on embayed beaches. Study case: Itapocorói Bay, Southern Brazil

description: ABSTRACT This paper presents a new approach for estimating run-up on embayed beaches based on a study of the microtidal coast of Itapocorói Bay, Southern Brazil using the surf similarity parameter and wave height at break location. The four step methodology involved: 1) direct wave measurement (34 days), wave run-up measurement (19 days at 7 points within the bay), measurement of bathymetry and beach topography in the entire bay; 2) tests on available formulae to calculate wave run-up; 3) use of the SWAN spectral wave model to simulate wave parameters at breaking at each wave run-up measurement point and; 4) development of a new formula/approach to assess wave run-up on embayed beaches (in both exposed and protected areas). During the experiments the significant wave height varied from 0.5 m to 3.01 m, the mean wave period from 2.79 s to 7.76 s (the peak period varied between 2.95 s and 17.18 s), the mean wave direction from 72.5° to 141.9° (the peak direction varied from 39.2° to 169.8°) and the beach slope (tan β) from 0.041 to 0.201. The proposed formula is in good agreement with measured data for different wave conditions and varying degrees of protection. The analysis demonstrates that although R² varies from 0.52 to 0.75, the wave run-up distribution over the measurements agreed well with the proposed model, as shown by quantile-quantile analysis (R²=0.98 to 0.99). The errors observed in individual cases may be related to errors of measurements, modeling and to non-linear processes in the swash zone, such as infragavity waves.
DOI: 10.6084/m9.figshare.14325698
title: The use of CBERS (China-Brazil Earth Resources Satellite) to trace the dynamics of total suspended matter at an urbanized coastal area

description: ABSTRACT The distribution of organic and inorganic particles in the water column, or the total suspended matter (TSM), responds to local and remote oceanographic and meteorological processes, potentially impacting biogeochemical cycles. In shallow coastal areas, where particles have distinct origins and compositions and vary in different time scales, the use of remote sensing tools for monitoring and tracing this material is highly encouraged due to the high temporal and spatial data resolution. The objective of this work was to understand the variability of in situ TSM at Santos Bay (Southeastern Brazil) and its response to oceanographic and meteorological conditions. We also aimed to verify the applicability of the satellite data from CBERS-2 sensor in order to map the dynamics of TSM in this region. Our results have shown that the distribution of TSM in Santos Bay varied consistently with winds, currents and tidal cycles, with significant relationships emphasizing the role of south-western winds and spring tides. Neap tides and eastern winds, along with rainfall, play an important role in the input of organic matter into the bay. In conclusion, our analyses showed that the main patterns observed in situ regarding the responses of TSM to the ocean-meteorological processes could be reproduced in the CBERS-2 satellite data, after simple and standard methods of images processing. TSM data retrieval from CBERS-2 or other satellite sensors were shown to be feasible, becoming an essential tool for synoptic observations of the composition and quality of water, especially at urbanized and impacted coastal areas.
DOI: 10.6084/m9.figshare.14325698.v1
title: The use of CBERS (China-Brazil Earth Resources Satellite) to trace the dynamics of total suspended matter at an urbanized coastal area

description: ABSTRACT The distribution of organic and inorganic particles in the water column, or the total suspended matter (TSM), responds to local and remote oceanographic and meteorological processes, potentially impacting biogeochemical cycles. In shallow coastal areas, where particles have distinct origins and compositions and vary in different time scales, the use of remote sensing tools for monitoring and tracing this material is highly encouraged due to the high temporal and spatial data resolution. The objective of this work was to understand the variability of in situ TSM at Santos Bay (Southeastern Brazil) and its response to oceanographic and meteorological conditions. We also aimed to verify the applicability of the satellite data from CBERS-2 sensor in order to map the dynamics of TSM in this region. Our results have shown that the distribution of TSM in Santos Bay varied consistently with winds, currents and tidal cycles, with significant relationships emphasizing the role of south-western winds and spring tides. Neap tides and eastern winds, along with rainfall, play an important role in the input of organic matter into the bay. In conclusion, our analyses showed that the main patterns observed in situ regarding the responses of TSM to the ocean-meteorological processes could be reproduced in the CBERS-2 satellite data, after simple and standard methods of images processing. TSM data retrieval from CBERS-2 or other satellite sensors were shown to be feasible, becoming an essential tool for synoptic observations of the composition and quality of water, especially at urbanized and impacted coastal areas.
DOI: 10.6084/m9.figshare.5666929
title: Feeding ecology of the beach silverside Atherinella blackburni (Atherinopsidae) in a tropical sandy beach, Southeastern Brazil

description: Abstract The feeding ecology of the beach silverside (Atherinella blackburni) in the surf zone of a tropical sand beach, located in the southeastern Brazil, was accessed through the gut content analysis of 198 fish. Factors such as fish's size, season and day period were analysed to understand how these variables affect the diet composition of the species. Results show that A. blackburni is a coastal neritic fish with a broad feeding niche. Most recurrent prey were zooplanktonic crustaceans, insects and benthic molluscs, in which Copepoda crustaceans were the dominant dietary item in occurrence and abundance. A. blackburni appears to have a slight ontogenetic shift in its diet, changing from benthic molluscs to crustaceans and insects along its life cycle. The diel activity also reveals to be an important factor to the A. blackburni feeding ecology. The predominant occurrence of small fish during the morning, along with the main preys for this size class, suggests that small individuals use shallower waters as feeding grounds during the morning and, during the night, they move to deeper waters for protection against predators.
DOI: 10.6084/m9.figshare.5666929.v1
title: Feeding ecology of the beach silverside Atherinella blackburni (Atherinopsidae) in a tropical sandy beach, Southeastern Brazil

description: Abstract The feeding ecology of the beach silverside (Atherinella blackburni) in the surf zone of a tropical sand beach, located in the southeastern Brazil, was accessed through the gut content analysis of 198 fish. Factors such as fish's size, season and day period were analysed to understand how these variables affect the diet composition of the species. Results show that A. blackburni is a coastal neritic fish with a broad feeding niche. Most recurrent prey were zooplanktonic crustaceans, insects and benthic molluscs, in which Copepoda crustaceans were the dominant dietary item in occurrence and abundance. A. blackburni appears to have a slight ontogenetic shift in its diet, changing from benthic molluscs to crustaceans and insects along its life cycle. The diel activity also reveals to be an important factor to the A. blackburni feeding ecology. The predominant occurrence of small fish during the morning, along with the main preys for this size class, suggests that small individuals use shallower waters as feeding grounds during the morning and, during the night, they move to deeper waters for protection against predators.
DOI: 10.6084/m9.figshare.5667424
title: Marine substrate response from the analysis of seismic attributes in CHIRP sub-bottom profiles

description: Abstract This paper presents an evaluation of the response of seismic reflection attributes in different types of marine substrate (rock, shallow gas, sediments) using seafloor samples for ground-truth statistical comparisons. The data analyzed include seismic reflection profiles collected using two CHIRP subbottom profilers (Edgetech Model 3100 SB-216S), with frequency ranging between 2 and 16 kHz, and a number (38) of sediment samples collected from the seafloor. The statistical method used to discriminate between different substratum responses was the non-parametric Kruskal-Wallis analysis, carried out in two steps: 1) comparison of Seismic Attributes between different marine substrates (unconsolidated sediments, rock and shallow gas); 2) comparison of Seismic Attributes between different sediment classes in seafloors characterized by unconsolidated sediments (subdivided according to sorting). These analyses suggest that amplitude-related attributes were effective in discriminating between sediment and gassy/rocky substratum, but did not differentiate between rocks and shallow gas. On the other hand, the Instantaneous Frequency attribute was effective in differentiating sediments, rocks and shallow gas, with sediment showing higher frequency range, rock an intermediate range, and shallow gas the lowest response. Regarding grain-size classes and sorting, statistical analysis discriminated between two distinct groups of samples, the SVFS (silt and very fine sand) and the SFMC (fine, medium and coarse sand) groups. Using a Spearman coefficient, it was found that the Instantaneous Amplitude was more efficient in distinguishing between the two groups. None of the attributes was able to distinguish between the closest grain size classes such as those of silt and very fine sand.