cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f2eet4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Impatiens balsamina",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086948-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25378/janelia.24222688
title: Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse dorsal striatum (jrc_mus-dorsal-striatum)

description: <b>Sample</b>: Wild-type, 4 month old mouse, strain: C57BL/6;129 from Jackson Lab<b>Sample Description</b>: Close appositions between the membrane of the endoplasmic reticulum (ER) and other intracellular membranes have important functions in cell physiology. These include lipid homeostasis, regulation of Ca2+ dynamics, and control of organelle biogenesis and dynamics. Although these membrane contacts have previously been observed in neurons, their distribution and abundance have not been systematically analyzed. Here, we have used focused ion beam-scanning electron microscopy to generate 3D reconstructions of intracellular organelles and their membrane appositions involving the ER (distance ≤30 nm) in different neuronal compartments. ER–plasma membrane (PM) contacts were particularly abundant in cell bodies, with large, flat ER cisternae apposed to the PM, sometimes with a notably narrow lumen (thin ER). Smaller ER–PM contacts occurred throughout dendrites, axons, and in axon terminals. ER contacts with mitochondria were abundant in all compartments, with the ER often forming a network that embraced mitochondria. Small focal contacts were also observed with tubulovesicular structures, likely to be endosomes, and with sparse multivesicular bodies and lysosomes found in our reconstructions. Our study provides an anatomical reference for interpreting information about interorganelle communication in neurons emerging from functional and biochemical studies.<b>Protocol</b>: Four month old female mice C57BL/6;129 were anesthetized with a ketamine/xylazine anesthetic mixture before perfusion with 2% depolymerized paraformaldehyde and 2.5% glutaraldehyde in 0.1 M sodium cacodylate buffer, postfixed in 2% OsO4, 1.5% K4Fe(CN)6, 0.1 M sodium cacodylate buffer 1 h. Subsequently, specimens were stained in block with 2% aqueous uranyl acetate (1 h), dehydrated in increasing concentrations of ethanol, and embedded in Epon then re-embedded in durcupan.<b>Contributions</b>: Sample provided by Yumei Wu, Christina Whites, and Pietro De Camilli (Yale), prepared for imaging by Yumei Wu and Christina Whites (Yale), with imaging and post-processing by C. Shan Xu (Yale), Kenneth Hayworth (HHMI/Janelia), Gleb Shtengel, and Harald Hess(HHMI/Janelia).<b>Acquisition ID</b>: jrc_mus-dorsal-striatum<b>Voxel size (nm)</b>: 4 x 4 x 4.44 (X, Y, Z)<b>Data dimensions (µm)</b>:<b> </b>10.2 x 10.3 x 6.0 (X, Y, Z)<b>Imaging start date</b>: 2016-09-09<b>Imaging duration (days)</b>: 3<b>Landing energy (eV)</b>: 700<b>Imaging current (nA)</b>: 0.20<b>Scanning speed (MHz)</b>: 0.400<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-dorsal-striatum/jrc_mus-dorsal-striatum.zarr/recon-2/em/<b>Visualization Website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-dorsal-striatum<b>Publication</b>:<b> </b>Wu et al., 2017; Xu et al., 2017; Xu et al., 2021
DOI: 10.15468/dl.4xrky5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.74919523166766 44.815326879354515,25.76061116611731 44.815326879354515,25.76061116611731 44.82674281380416,25.74919523166766 44.82674281380416,25.74919523166766 44.815326879354515))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 1980-2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003992-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pheenb
title: Occurrence Download

description: A dataset containing 1535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Croton L."
 ]
}

 The dataset includes 1535 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004003-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17189985
title: T2 and ADC measurement data in rectal cancer patients
DOI: 10.5281/zenodo.17189986
title: T2 and ADC measurement data in rectal cancer patients
DOI: 10.26030/yj0g-1273
title: Bulk RNA sequencing and spatially resolved transcriptional profiling of cerebellums from mice flown on the RRRM-2 mission

description: In the Rodent Research Reference Mission (RRRM-2), forty female C57BL/6NTac mice were flown on the International Space Station. To assess differences in outcomes due to age, twenty 12 week-old and twenty 29 week-old mice were flown, respectively. To directly assess spaceflight effects, half of the young and old mice (10 old, 10 young) were sacrificed on-orbit after 55-58 days (ISS Terminal, ISS-T), while the other half (10 old, 10 young) were returned live to Earth after 32 days and allowed to recover for 24 days (Live Animal Return, LAR) before sacrifice. ISS-T and LAR mice were the same age at sacrifice. Both the ISS-T and LAR animals had independent ground controls (10 mice per group housed in flight hardware in matched environmental conditions), basal controls (10 mice per group sacrificed 2 days before launch), and vivarium controls (10 mice per group housed within standard vivarium habitats). Thus RRRM-2 included a total of 160 mice. This study includes bulk RNA sequencing and spatially resolved transcriptional profiling data from cerebellums from 4 (bulk RNAseq) or 5 (spatial transcriptomics) old ISS-T flight animals, 3 old ISS-T ground control (GC) animals, 5 young ISS-T flight animals, 3 young ISS-T GC animals, 3 old LAR flight animals, 3 old LAR GC animals, 2 (bulk RNAseq) or 3 (spatial transcriptomics) young LAR flight animals, and 3 young LAR GC animals. Cerebellums from the right hemisphere were embedded and cryosectioned. Cryosections were either processed for bulk RNA sequencing or placed on gene expression arrays, stained and imaged. Imaging was followed by tissue permeabilization to release mRNA molecules from cells for capture onto the array surface. Subsequently, spatial transcriptomics libraries were prepared and sequenced.
DOI: 10.3535/fn3-ava-cj4
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kcl-mla-9fa
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9q7-xkj-h7b
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vql-pwz-lkt
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/las-7zc-151
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2ratua
title: Occurrence Download

description: A dataset containing 3298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oxycoccus microcarpus)",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 3298 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025765-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jtm-vs6-rjq
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/shd-3ba-zpy
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vcp-5z3-8ch
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yny-88w-1hr
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4a5-9mx-het
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zvc-fg8-ksd
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n2k-p46-kr5
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ndm-yfb-xjk
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bdk-lpe-9vk
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c39-h6h-mrr
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wm3-wmn-ssp
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9qcvjx
title: Occurrence Download

description: A dataset containing 3735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leaunio lienosus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 3735 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025766-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26078/fced-8887
title: Investigating Channel Narrowing and Nonnative Vegetation Encroachment in Three Dryland Rivers

description: Water development and the proliferation of invasive riparian vegetation has led to widespread habitat loss and simplification of rivers in the western United States, contributing to the imperilment of native fishes. Here, we quantify channel narrowing and vegetation encroachment, which are conspicuous indicators of riverine habitat degradation, along approximately 400 km of three dryland tributaries of the upper Colorado River. To accomplish this, we conducted a comparative analysis of aerial photographs from historical (1930s) and contemporary (2010s or 2020s) time periods and utilized Light Detection and Ranging (LiDAR) data and Object-Based Image Analysis (OBIA) to determine contemporary canopy cover of woody riparian species. Coinciding with a general decrease in flows over time, all three rivers underwent substantial channel narrowing; although, the degree of narrowing varied among rivers (78%, 73%, and 29%). The magnitude of channel narrowing generally matched the deviation from historical spring (i.e., peak) flows, with large decreases in spring flows corresponding to substantially more pronounced channel narrowing. In contrast to patterns of channel narrowing, contemporary woody cover was similarly high among all three rivers (39%, 41%, and 36% of valley bottom area), and a woody vegetation change analysis conducted for one river indicated a substantial increase in woody vegetation along the active channel compared to historical conditions (4% to 74%). These findings underscore a common pattern observed in rivers throughout the basin, where river channels often undergo narrowing and encroachment by invasive vegetation, ultimately leading to habitat simplification. Our findings also emphasize that, when possible, preserving or restoring large magnitude and long duration floods, should be prioritized for the effective conservation of dryland rivers.
DOI: 10.15468/dl.s9vn6f
title: Occurrence Download

description: A dataset containing 1112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Garrya elliptica)",
 "StateProvince is one of (California, Oregon)",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1112 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025966-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfmu9q
title: Occurrence Download

description: A dataset containing 24276523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Basidiomycota"
 ]
}

 The dataset includes 24276523 records from 2930 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025903-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110625428
title: Persepolis Fortification Elamite Tablet 0015, PF-NN 0015

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF-NN 0015 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impressions on left edge and upper edge. ❧ [Physical Object Note:] Damage or cracks on left edge, obverse, right edge, reverse and upper edge.
DOI: 10.25549/inscriptifact-ouc110623611
title: Persepolis Fortification Anepigraphic Tablet 0888.202, PFAnep 0888.202

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0888.202, PFUT 0888-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse. ❧ [Physical Object Note:] Large crack, broken area on bottom edge, extending onto obverse. Cracks on left edge, obverse, reverse, upper edge. Chips on upper edge.
DOI: 10.25549/inscriptifact-ouc110625422
title: Persepolis Fortification Anepigraphic Tablet 1054.107, PFAnep 1054.107

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 1054.107, PFUT 1054-107 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse, reverse and upper edge. ❧ [Physical Object Note:] Small cracks on left edge, obverse. Broken area on right edge.
DOI: 10.25549/inscriptifact-ouc110623584
title: Persepolis Fortification Anepigraphic Tablet 0884.203, PFAnep 0884.203

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0884.203, PFUT 0884-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse, upper edge. ❧ [Physical Object Note:] Chip on bottom edge. Small cracks on obverse, reverse. Some chipping of left edge.
DOI: 10.25549/inscriptifact-ouc110625414
title: Persepolis Fortification Elamite Tablet 0015, PF-NN 0015

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF-NN 0015 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impressions on left edge and upper edge. ❧ [Physical Object Note:] Damage or cracks on left edge, obverse, right edge, reverse and upper edge.
DOI: 10.25549/inscriptifact-ouc110623583
title: Persepolis Fortification Anepigraphic Tablet 0884.202, PFAnep 0884.202

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0884.202, PFUT 0884-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, obverse, reverse, upper edge. ❧ [Physical Object Note:] Left edge broken. Cracks on obverse, right edge, reverse, upper edge. Chips on bottom edge, reverse, obverse, upper edge.
DOI: 10.25549/inscriptifact-ouc1sto1611887
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.25549/inscriptifact-ouc110623581
title: Persepolis Fortification Anepigraphic Tablet 0884.201, PFAnep 0884.201

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0884.201, PFUT 0884-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse, reverse and upper edge. ❧ [Physical Object Note:] Small black sots on surfaces of tablet. Small cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc1sto1611884
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.25549/inscriptifact-ouc110623576
title: Persepolis Fortification Anepigraphic Tablet 0884.202, PFAnep 0884.202

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0884.202, PFUT 0884-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, obverse, reverse, upper edge. ❧ [Physical Object Note:] Left edge broken. Cracks on obverse, right edge, reverse, upper edge. Chips on bottom edge, reverse, obverse, upper edge.
DOI: 10.25549/inscriptifact-ouc110623551
title: Persepolis Fortification Anepigraphic Tablet 0883.201, PFAnep 0883.201

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0883.201, PFUT 0883-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse, reverse and upper edge. ❧ [Physical Object Note:] Surface flaking of tablet on bottom edge, right edge, right side of reverse. Numerous small chips and cracks on all surfaces.