cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yhx4n2
title: Occurrence Download

description: A dataset containing 4405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((5.34888 52.58016,5.37959 52.58016,5.37959 52.60169,5.34888 52.60169,5.34888 52.58016))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4405 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111938-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prctf4
title: Occurrence Download

description: A dataset containing 101288522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November)",
 "OccurrenceStatus is Present",
 "Year 1943-2024"
 ]
}

 The dataset includes 101288522 records from 6722 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111930-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13048772
title: TRIM31 promotes apoptosis via TAK1-mediated activation of NF-κB signaling in sepsis-induced myocardial dysfunction

description: Sepsis is a major condition caused by an overwhelming inflammatory response to an infection. Sepsis-induced myocardial dysfunction (SIMD) is a common complication in septic patients and a major predictor of morbidity and mortality. Here, we investigated the role of tripartite motif 31 (TRIM31) protein in sepsis progression <i>in vitro</i> and <i>in vivo</i>. Quantitative real-time PCR and western blot were used to detect the expression levels of relative genes and proteins. Cell proliferation and apoptosis were evaluated to determine cell viability. H&E and IHC staining were performed to examine morphological and pathological changes in mice. ELISA assay was used to detect inflammatory factors. TRIM31 was upregulated in septic patients compared with normal people. TRIM31 depletion reduced LPS-induced apoptosis whereas TRIM31 overexpression-elevated LPS-induced apoptosis. Furthermore, TRIM31 interacted with and ubiquitinated transforming growth factor-β-activated kinase-1 (TAK1), resulting in TAK1 activation and subsequent induction of NF-κB signaling. Of note, <i>Trim31</i> depletion or blockade by PDTC treatment inhibited LPS-induced apoptosis <i>in vivo</i>. In conclusion, TRIM31 played an important role in SIMD by activating TAK1-mediated NF-κB signaling pathway.
DOI: 10.6084/m9.figshare.13048772.v1
title: TRIM31 promotes apoptosis via TAK1-mediated activation of NF-κB signaling in sepsis-induced myocardial dysfunction

description: Sepsis is a major condition caused by an overwhelming inflammatory response to an infection. Sepsis-induced myocardial dysfunction (SIMD) is a common complication in septic patients and a major predictor of morbidity and mortality. Here, we investigated the role of tripartite motif 31 (TRIM31) protein in sepsis progression <i>in vitro</i> and <i>in vivo</i>. Quantitative real-time PCR and western blot were used to detect the expression levels of relative genes and proteins. Cell proliferation and apoptosis were evaluated to determine cell viability. H&E and IHC staining were performed to examine morphological and pathological changes in mice. ELISA assay was used to detect inflammatory factors. TRIM31 was upregulated in septic patients compared with normal people. TRIM31 depletion reduced LPS-induced apoptosis whereas TRIM31 overexpression-elevated LPS-induced apoptosis. Furthermore, TRIM31 interacted with and ubiquitinated transforming growth factor-β-activated kinase-1 (TAK1), resulting in TAK1 activation and subsequent induction of NF-κB signaling. Of note, <i>Trim31</i> depletion or blockade by PDTC treatment inhibited LPS-induced apoptosis <i>in vivo</i>. In conclusion, TRIM31 played an important role in SIMD by activating TAK1-mediated NF-κB signaling pathway.
DOI: 10.6084/m9.figshare.15145913
title: Additional file 5 of Using single-nucleus RNA-sequencing to interrogate transcriptomic profiles of archived human pancreatic islets

description: Additional file 5. List of top 20 snRNA-seq enriched genes ordered by fold change of percentage of detection (upper table) or percentage of detection (lower table) compared to scRNA-seq.
DOI: 10.6084/m9.figshare.13048929
title: Provenance of Middle Jurassic sequences in the Northern Qiangtang: implications for Mesozoic exhumation of the Central Tibetan Mountain Range

description: The exhumation history of the Central Tibetan Mountain Range (CTMR) in the Qiangtang terrane is important for establishing the boundary conditions prior to the India-Asia collision. Previous studies suggest that the CTMR is a significant provenance for Jurassic sediments in the Qiangtang terrane. The Middle Jurassic sediments north of the CTMR provide crucial information to constrain the timing of exhumation in the source area. Here we present detailed stratigraphic sections and detrital zircon U-Pb geochronology in the northern Qiangtang basin. Sedimentary facies analyses indicate that the Early-Middle Jurassic Quemoco Formation is mainly deposited in the deltaic system and carbonate-platform environment. Upsection, the Middle Jurassic Xiali Formation was deposited in a prodelta environment. Combined analyses of palaeocurrent indicators, conglomerate clast composition and U-Pb age spectra suggest that the CTMR is the main provenance for the Quemoco and Xialai formations; while the Triassic southern Qiangtang strata and Jinsha suture are the secondary source areas. The changes in the specific position of detrital zircon U-Pb age peaks around 500 Ma indicate evolving source terranes. Detrital zircon U-Pb geochronological data from the base of the Quemoco Formation and top of the Xiali Formation constrain the conservative maximum depositional ages to be 174.8 ± 1.0 and 161.7 ± 2.3 Ma, respectively. Combined with previous geochronology data, structural geology, and provenance studies across the Qiangtang terrane, the CTMR experienced rapid exhumation during Middle Jurassic and Late Cretaceous and slow exhumation since Eocene. The Jurassic uplift and exhumation of the CTMR were accompanied by the uplift of the southern Qiangtang terrane. The deformation and exhumation history is in favour of the hypothesis that plateau growth in the south-central Qiangtang terrane initiated during the Mesozoic, which is an important initial condition to quantify Cenozoic growth of the Tibetan Plateau.
DOI: 10.6084/m9.figshare.13048929.v2
title: Provenance of Middle Jurassic sequences in the Northern Qiangtang: implications for Mesozoic exhumation of the Central Tibetan Mountain Range

description: The exhumation history of the Central Tibetan Mountain Range (CTMR) in the Qiangtang terrane is important for establishing the boundary conditions prior to the India-Asia collision. Previous studies suggest that the CTMR is a significant provenance for Jurassic sediments in the Qiangtang terrane. The Middle Jurassic sediments north of the CTMR provide crucial information to constrain the timing of exhumation in the source area. Here we present detailed stratigraphic sections and detrital zircon U-Pb geochronology in the northern Qiangtang basin. Sedimentary facies analyses indicate that the Early-Middle Jurassic Quemoco Formation is mainly deposited in the deltaic system and carbonate-platform environment. Upsection, the Middle Jurassic Xiali Formation was deposited in a prodelta environment. Combined analyses of palaeocurrent indicators, conglomerate clast composition and U-Pb age spectra suggest that the CTMR is the main provenance for the Quemoco and Xialai formations; while the Triassic southern Qiangtang strata and Jinsha suture are the secondary source areas. The changes in the specific position of detrital zircon U-Pb age peaks around 500 Ma indicate evolving source terranes. Detrital zircon U-Pb geochronological data from the base of the Quemoco Formation and top of the Xiali Formation constrain the conservative maximum depositional ages to be 174.8 ± 1.0 and 161.7 ± 2.3 Ma, respectively. Combined with previous geochronology data, structural geology, and provenance studies across the Qiangtang terrane, the CTMR experienced rapid exhumation during Middle Jurassic and Late Cretaceous and slow exhumation since Eocene. The Jurassic uplift and exhumation of the CTMR were accompanied by the uplift of the southern Qiangtang terrane. The deformation and exhumation history is in favour of the hypothesis that plateau growth in the south-central Qiangtang terrane initiated during the Mesozoic, which is an important initial condition to quantify Cenozoic growth of the Tibetan Plateau.
DOI: 10.6084/m9.figshare.13048929.v1
title: Provenance of Middle Jurassic sequences in the Northern Qiangtang: implications for Mesozoic exhumation of the Central Tibetan Mountain Range

description: The exhumation history of the Central Tibetan Mountain Range (CTMR) in the Qiangtang terrane is important for establishing the boundary conditions prior to the India-Asia collision. Previous studies suggest that the CTMR is a significant provenance for Jurassic sediments in the Qiangtang terrane. The Middle Jurassic sediments north of the CTMR provide crucial information to constrain the timing of exhumation in the source area. Here we present detailed stratigraphic sections and detrital zircon U-Pb geochronology in the northern Qiangtang basin. Sedimentary facies analyses indicate that the Early-Middle Jurassic Quemoco Formation is mainly deposited in the deltaic system and carbonate-platform environment. Upsection, the Middle Jurassic Xiali Formation was deposited in a prodelta environment. Combined analyses of palaeocurrent indicators, conglomerate clast composition and U-Pb age spectra suggest that the CTMR is the main provenance for the Quemoco and Xialai formations; while the Triassic southern Qiangtang strata and Jinsha suture are the secondary source areas. The changes in the specific position of detrital zircon U-Pb age peaks around 500 Ma indicate evolving source terranes. Detrital zircon U-Pb geochronological data from the base of the Quemoco Formation and top of the Xiali Formation constrain the conservative maximum depositional ages to be 174.8 ± 1.0 and 161.7 ± 2.3 Ma, respectively. Combined with previous geochronology data, structural geology, and provenance studies across the Qiangtang terrane, the CTMR experienced rapid exhumation during Middle Jurassic and Late Cretaceous and slow exhumation since Eocene. The Jurassic uplift and exhumation of the CTMR were accompanied by the uplift of the southern Qiangtang terrane. The deformation and exhumation history is in favour of the hypothesis that plateau growth in the south-central Qiangtang terrane initiated during the Mesozoic, which is an important initial condition to quantify Cenozoic growth of the Tibetan Plateau.
DOI: 10.48420/25289305
title: Research data (Table 17: Annotation of JIA risk loci) for PhD Thesis: The Functional Characterisation of Risk Loci Associated to Musculoskeletal Diseases

description: The table provides annotation details for SNPs associated with JIA. Annotation includes information on overlap with EpiMap enhancer regions in immune cell types, EpiMap enhancer-gene expression correlations in CD4+ T-cells, RegulomeDB scores indicating the likelihood of regulatory function, and IMPACT scores indicating potential functional impact.
DOI: 10.48420/25289305.v1
title: Research data (Table 17: Annotation of JIA risk loci) for PhD Thesis: The Functional Characterisation of Risk Loci Associated to Musculoskeletal Diseases

description: The table provides annotation details for SNPs associated with JIA. Annotation includes information on overlap with EpiMap enhancer regions in immune cell types, EpiMap enhancer-gene expression correlations in CD4+ T-cells, RegulomeDB scores indicating the likelihood of regulatory function, and IMPACT scores indicating potential functional impact.
DOI: 10.15468/uhcqxq
title: 2019_Parc National des Ecrins_2

description: v_silene_synthese_2019-06-03_111937:Parc National des Ecrins
DOI: 10.15468/gqwjnc
title: ONF - Données issues d'études conventionnelles commandées par organismes exterieurs à l'ONF - MOA : Département Santé des Forêts-ONF - DFF Import Etudes ONF - MICAS_Lilian - MOA : Département Santé des Forêts

description: Données DFF issues de la bdd des réseaux naturalistes de l'ONF pour DSF - Données transmises à l'ONF dans le cadre d'études commandées par MOA exterieures à l'ONF
DOI: 10.15468/4eg9hy
title: ONF - MIGBIO Observations et inventaires MOA ONF-ONF - DFF Import Etudes ONF - MIG BIO - BROCHIER_Simon

description: Données DFF ONF - MIG BIO - BROCHIER_Simon
DOI: 10.15468/dwjycx
title: ONF - MIGBIO Observations et inventaires MOA ONF-ONF - DFF Import Etudes ONF - MIG BIO - FUCHS_Ludovic

description: Données DFF ONF - MIG BIO - FUCHS_Ludovic
DOI: 10.15468/pw8hb4
title: 2022_Communauté de Communes des Alpes d'Azur_1

description: 2022_CCAA_araignees:Communauté de Communes des Alpes d'Azur
DOI: 10.6084/m9.figshare.21437662
title: Bayesian Sparse Regression for Mixed Multi-Responses with Application to Runtime Metrics Prediction in Fog Manufacturing

description: Fog manufacturing can greatly enhance traditional manufacturing systems through distributed Fog computation units, which are governed by predictive computational workload offloading methods under different Industrial Internet architectures. It is known that the predictive offloading methods highly depend on accurate prediction and uncertainty quantification of runtime performance metrics, containing multivariate mixed-type responses (i.e., continuous, counting, binary). In this work, we propose a Bayesian sparse regression for multivariate mixed responses to enhance the prediction of runtime performance metrics and to enable the statistical inferences. The proposed method considers both group and individual variable selection to jointly model the mixed types of runtime performance metrics. The conditional dependency among multiple responses is described by a graphical model using the precision matrix, where a spike-and-slab prior is used to enable the sparse estimation of the graph. The proposed method not only achieves accurate prediction, but also makes the predictive model more interpretable with statistical inferences on model parameters and prediction in the Fog manufacturing. A simulation study and a real case example in a Fog manufacturing are conducted to demonstrate the merits of the proposed model.
DOI: 10.5281/zenodo.10725778
title: [IO Islamic 184] يوسف و زليخا

description: Yûsuf-u-Zalîkhâ

This manuscript is now IO Islamic 1593 in the India Office collections.

[metadata: Hermann Ethé, Catalogue of Persian Manuscripts in the Library of the India Office, 2 vols. (Oxford: India Office, 1903): volume 1, number 184 here with notations and hyperlinks].


1593

Yûsuf u Zalîkhâ (يوسف و زليخا).

Yûsuf and Zalîkhâ, a mathnawî by Mullâ Nâżim of Harât, who was a court-poet and favourite of ‘Abbâs Ḳulîkhân Shâmlû, the Beglerbeg of Harât, at whose request he composed this mathnawî, which is to a great extent based on Firdausî’s name on fol. 19a, l. 7. He commenced the poem in A.H. 1058 (A.D. 1648), and completed it A.H. 1072 (A.D. 1661, 1662); he died A.H. 1081 (A.D. 1670, 1671), see Bodleian Cat., No. 1130; Rieu ii. p. 692; W. Pertsch, Berlin Cat., pp. 29, 721, and 927; A. Sprenger, Catal., pp. 151 and 515; Âtashkada, No. 305 (Bodleian Cat., col. 273), and Khulâṣat-alkalâm, No. 71 (ib., col. 301). It has been printed at Lucknow, A.H. 1286.

Beginning:

خدايا چون سپهرم سينه بگشا

دلم طوطى كن و آئينه بنما

No date. Many pages worm-eaten and severely damaged at the corners.

No. 184, ff. 165, 2 coll., each ll. 15; Nasta’lîḳ; size, 9½ in. by 4¼ in.
DOI: 10.5281/zenodo.10725779
title: [IO Islamic 184] يوسف و زليخا

description: Yûsuf-u-Zalîkhâ

This manuscript is now IO Islamic 1593 in the India Office collections.

[metadata: Hermann Ethé, Catalogue of Persian Manuscripts in the Library of the India Office, 2 vols. (Oxford: India Office, 1903): volume 1, number 184 here with notations and hyperlinks].


1593

Yûsuf u Zalîkhâ (يوسف و زليخا).

Yûsuf and Zalîkhâ, a mathnawî by Mullâ Nâżim of Harât, who was a court-poet and favourite of ‘Abbâs Ḳulîkhân Shâmlû, the Beglerbeg of Harât, at whose request he composed this mathnawî, which is to a great extent based on Firdausî’s name on fol. 19a, l. 7. He commenced the poem in A.H. 1058 (A.D. 1648), and completed it A.H. 1072 (A.D. 1661, 1662); he died A.H. 1081 (A.D. 1670, 1671), see Bodleian Cat., No. 1130; Rieu ii. p. 692; W. Pertsch, Berlin Cat., pp. 29, 721, and 927; A. Sprenger, Catal., pp. 151 and 515; Âtashkada, No. 305 (Bodleian Cat., col. 273), and Khulâṣat-alkalâm, No. 71 (ib., col. 301). It has been printed at Lucknow, A.H. 1286.

Beginning:

خدايا چون سپهرم سينه بگشا

دلم طوطى كن و آئينه بنما

No date. Many pages worm-eaten and severely damaged at the corners.

No. 184, ff. 165, 2 coll., each ll. 15; Nasta’lîḳ; size, 9½ in. by 4¼ in.
DOI: 10.6084/m9.figshare.21437662.v1
title: Bayesian Sparse Regression for Mixed Multi-Responses with Application to Runtime Metrics Prediction in Fog Manufacturing

description: Fog manufacturing can greatly enhance traditional manufacturing systems through distributed Fog computation units, which are governed by predictive computational workload offloading methods under different Industrial Internet architectures. It is known that the predictive offloading methods highly depend on accurate prediction and uncertainty quantification of runtime performance metrics, containing multivariate mixed-type responses (i.e., continuous, counting, binary). In this work, we propose a Bayesian sparse regression for multivariate mixed responses to enhance the prediction of runtime performance metrics and to enable the statistical inferences. The proposed method considers both group and individual variable selection to jointly model the mixed types of runtime performance metrics. The conditional dependency among multiple responses is described by a graphical model using the precision matrix, where a spike-and-slab prior is used to enable the sparse estimation of the graph. The proposed method not only achieves accurate prediction, but also makes the predictive model more interpretable with statistical inferences on model parameters and prediction in the Fog manufacturing. A simulation study and a real case example in a Fog manufacturing are conducted to demonstrate the merits of the proposed model.
DOI: 10.6084/m9.figshare.21437665
title: Maximum One-Factor-At-A-Time Designs for Screening in Computer Experiments

description: Identifying important factors from a large number of potentially important factors of a highly nonlinear and computationally expensive black box model is a difficult problem. Morris screening and Sobol’ design are two commonly used model-free methods for doing this. In this article, we establish a connection between these two seemingly different methods in terms of their underlying experimental design structure and further exploit this connection to develop an improved design for screening called Maximum One-Factor-At-A-Time (MOFAT) design. We also develop efficient methods for constructing MOFAT designs with a large number of factors. Several examples are presented to demonstrate the advantages of MOFAT designs compared to Morris screening and Sobol’ design methods.
DOI: 10.6084/m9.figshare.23056460
title: Nuclear cGAS ubiquitylation

description: Model of cGAS ubiquitylation.
DOI: 10.6084/m9.figshare.23056460.v1
title: Nuclear cGAS ubiquitylation

description: Model of cGAS ubiquitylation.
DOI: 10.6084/m9.figshare.21437665.v1
title: Maximum One-Factor-At-A-Time Designs for Screening in Computer Experiments

description: Identifying important factors from a large number of potentially important factors of a highly nonlinear and computationally expensive black box model is a difficult problem. Morris screening and Sobol’ design are two commonly used model-free methods for doing this. In this article, we establish a connection between these two seemingly different methods in terms of their underlying experimental design structure and further exploit this connection to develop an improved design for screening called Maximum One-Factor-At-A-Time (MOFAT) design. We also develop efficient methods for constructing MOFAT designs with a large number of factors. Several examples are presented to demonstrate the advantages of MOFAT designs compared to Morris screening and Sobol’ design methods.
DOI: 10.6084/m9.figshare.13049075
title: Genome-Wide Association Study of Meat Quality Traits in a three-way Crossbred Commercial Pig population

description: This "Genotype data.zip" file contains the genotypes of 582 individuals (582_individual.map and 582_individual.ped ).<br>
DOI: 10.6084/m9.figshare.25107707
title: Additional file 1 of The relationship between dysphagia and frailty among Chinese hospitalized older patients: a serial mediation model through self-perceived oral health and self-reported nutritional status

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25107707.v1
title: Additional file 1 of The relationship between dysphagia and frailty among Chinese hospitalized older patients: a serial mediation model through self-perceived oral health and self-reported nutritional status

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24081492.v1
title: Continuous strain tuning of oxygen-evolution catalysts with anisotropic thermal expansion

description: The data that support the findings of this study are available within the article and its Supplementary Information files. All other relevant data supporting the findings of this study are available from the corresponding authors upon request. Source data are provided with this paper.
DOI: 10.6084/m9.figshare.24081492
title: Continuous strain tuning of oxygen-evolution catalysts with anisotropic thermal expansion

description: The data that support the findings of this study are available within the article and its Supplementary Information files. All other relevant data supporting the findings of this study are available from the corresponding authors upon request. Source data are provided with this paper.
DOI: 10.5281/zenodo.10656891
title: Exploring the role of RFX6 in pancreatic islet development using iPSCs

description: Project manager(s): Essam M. Abdelalim (Sidra Medicine, Qatar)

Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX6 knockout iPSCs (RFX6 KO iPSCs) generation. WT-iPSCs and RFX6 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX6’s role during pancreatic islet development. The dataset represents RNA-seq data generated from pancreatic progenitors (PPs) and endocrine progenitors (EPs) derived from WT-iPSCs and RFX6 KO iPSCs. 

The file name is: Sample name _overall sample number_read direction_001 where:

- PPs-WT-Rep1: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 1.

- PPs-WT-Rep2: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 2.

- PPs-WT-Rep3: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 3.

- PPs-KO-Rep1: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 1.

- PPs-KO-Rep2: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 2.

- PPs-KO-Rep3: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 3.

- EPs-WT-Rep1: endocrine progenitors (EPs) derived from WT-iPSCs, replicate 1.

- EPs-WT-Rep2: endocrine progenitors (EPs) derived from WT-iPSCs, replicate 2.

- PPs-KO-Rep1: endocrine progenitors (EPs) derived from RFX6 KO iPSCs, replicate 1.

- PPs-KO-Rep2: endocrine progenitors (EPs) derived from RFX6 KO iPSCs, replicate 2.

- Read direction: R1 (Forward), R2 (Reverse).