cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1mbhk0
title: CCDC 1499642: Experimental Crystal Structure Determination

description: Related Article: A. Irudaya Jothi, P. V. Priyanka, V. Alexander|2023|J.Mol.Struct.|1284|135367|doi:10.1016/j.molstruc.2023.135367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1mbhl1
title: CCDC 1499643: Experimental Crystal Structure Determination

description: Related Article: A. Irudaya Jothi, P. V. Priyanka, V. Alexander|2023|J.Mol.Struct.|1284|135367|doi:10.1016/j.molstruc.2023.135367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1mv27s
title: CCDC 1514605: Experimental Crystal Structure Determination

description: Related Article: A. Irudaya Jothi, P. V. Priyanka, V. Alexander|2023|J.Mol.Struct.|1284|135367|doi:10.1016/j.molstruc.2023.135367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nbdm0
title: CCDC 1529342: Experimental Crystal Structure Determination

description: Related Article: A. Irudaya Jothi, P. V. Priyanka, V. Alexander|2023|J.Mol.Struct.|1284|135367|doi:10.1016/j.molstruc.2023.135367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28fbrt
title: CCDC 2098196: Experimental Crystal Structure Determination

description: Related Article: Artem Barkanov, Anna Zakharova, Tatjana Vlasova, Ekaterina Barkanova, Andrew Khomyakov, Igor Avetissov, Ilya Taydakov, Nikolay Datskevich, Victoria Goncharenko, Roman Avetisov|2022|J.Mater.Sci.|57|8393|doi:10.1007/s10853-021-06721-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28fbsv
title: CCDC 2098197: Experimental Crystal Structure Determination

description: Related Article: Artem Barkanov, Anna Zakharova, Tatjana Vlasova, Ekaterina Barkanova, Andrew Khomyakov, Igor Avetissov, Ilya Taydakov, Nikolay Datskevich, Victoria Goncharenko, Roman Avetisov|2022|J.Mater.Sci.|57|8393|doi:10.1007/s10853-021-06721-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28fbtw
title: CCDC 2098198: Experimental Crystal Structure Determination

description: Related Article: Artem Barkanov, Anna Zakharova, Tatjana Vlasova, Ekaterina Barkanova, Andrew Khomyakov, Igor Avetissov, Ilya Taydakov, Nikolay Datskevich, Victoria Goncharenko, Roman Avetisov|2022|J.Mater.Sci.|57|8393|doi:10.1007/s10853-021-06721-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7488/ds/7453
title: Development of a UPLC-MS/MS method for the simultaneous analysis of AT7519 and acetaminophen in a mouse model of acute inflammation
title: Method validation
title: Method validation of LC-MS/MS precision and accuracy APAP and AT7519

description: Targeted chromatography and mass spectrometry can be used to assess multiple compounds simultaneously and this approach has not been applied yet to measure APAP and AT7519 in a mouse model.Targeted mass spectrometry chromatography data of the validation of the LC-MS/MS method for measurement of APAP and AT7519. Chromatographic peaks are integrated to give a peak area and this is used to calculate a peak area ratio of the analytes of interest (APAP and AT7519) and their isotopically labelled internal standards. The precision and accuracy of the peak areas and peak area ratios are assessed through repeated measurement of separate samples in an inter-assay (between days) and intra-assay (Within the same day) assessments. The dataset is related to the upcoming publication "Analysis of AT7519 as a pro-resolution compound in an acetaminophen-induced mouse model of acute inflammation by UPLC-MS/MS", submitted to Journal of Inflammation.
DOI: 10.5517/ccdc.csd.cc2clcp1
title: CCDC 2192403: Experimental Crystal Structure Determination

description: Related Article: Hsiao-Ci Huang, Ya-Chu Hsieh, Pei-Lun Lee, Chi-Chen Lin, Yeu-Shiuan Ho, Wei-Kai Shao, Chi-Tien Hsieh, Mu-Jeng Cheng, Yao-Ting Wu|2023|J.Am.Chem.Soc.|145|10304|doi:10.1021/jacs.3c01647
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7400842
title: Data for "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources"

description: Supplementary figures and raw data associated with the publication "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources". Data for physiological and NanoSIMS measurements are uploaded as individual sheets/tabs in the .xslx file. "Fig. 1" contains data for physiological measurements (biomass, protein content, and symbiont density) of fed and starved Aiptasia. "Fig. 2" contains data for NanoSIMS measurements for regions of interest from the tissue of fed and starved Aiptasia as well as unlabelled control Aiptasia. The R script contains all code required to repeat the data analysis and plotting.
DOI: 10.5281/zenodo.7400843
title: Data for "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources"

description: Raw data associated with the publication "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources". Data for physiological and NanoSIMS measurements are uploaded as individual sheets/tabs in the .xslx file. "Fig. 1" contains data for physiological measurements (biomass, protein content, and symbiont density) of fed and starved Aiptasia. "Fig. 2" contains data for NanoSIMS measurements for regions of interest from the tissue of fed and starved Aiptasia.
DOI: 10.5281/zenodo.7774495
title: Data for "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources"

description: Raw data associated with the publication "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources". Data for physiological and NanoSIMS measurements are uploaded as individual sheets/tabs in the .xslx file. "Fig. 1" contains data for physiological measurements (biomass, protein content, and symbiont density) of fed and starved Aiptasia. "Fig. 2" contains data for NanoSIMS measurements for regions of interest from the tissue of fed and starved Aiptasia as well as unlabelled control Aiptasia. The R script contains all code required to repeat the data analysis and plotting.
DOI: 10.5281/zenodo.7950075
title: Data for "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources"

description: Supplementary figures and raw data associated with the publication "Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources". Data for physiological and NanoSIMS measurements are uploaded as individual sheets/tabs in the .xslx file. "Fig. 1" contains data for physiological measurements (biomass, protein content, and symbiont density) of fed and starved Aiptasia. "Fig. 2" contains data for NanoSIMS measurements for regions of interest from the tissue of fed and starved Aiptasia as well as unlabelled control Aiptasia. The R script contains all code required to repeat the data analysis and plotting.
DOI: 10.18112/openneuro.ds004196.v1.0.28
title: FMRI-EEG Prestudy
DOI: 10.25502/pp4v-f444/d
title: Soil analysis data from the localities of Ntui and Ebolowa for research on the theme "Integrated Soil Fertility Management in the Transition Zones Between Savannah Forest (Ntui) and Dense Tropical Forest (Ebolowa) in Cameroon

description: Cocoasoils aims to deploy an Integrated Soil Fertility Management (ISFM) approach that embraces an integrated system’s approach to cocoa intensification while combining improved planting materials, canopy cover management and pest/disease control with targeted fertilizer application to enhance sustainability and avoid deforestation.
DOI: 10.17864/1947.120
title: Data from meta-analysis of the association between intolerance of uncertainty, anxiety, and worry in children and adolescents

description: This dataset was generated through a systematic review and meta-analysis of the association between intolerance of uncertainty, anxiety and worry in children and adolescents. The data files include a list of all studies identified by the original search, the reasons for rejection, the study characteristics of included studies, the raw data that was used for the meta-analyses reported in the associated paper and the R scripts used to analyse the data.
description: The data capture the process and outcome of the meta-analysis review published in Osmana?ao?lu, N., et al. (2018), 'Intolerance of uncertainty, anxiety, and worry in children and adolescents: A meta-analysis', Journal of Affective Disorders 225: 80-90. http://dx.doi.org/10.1016/j.jad.2017.07.035.
description: The analyses were conducted using RStudio (version 3.2.3) and the Metafor package. The scripts are provided. These are named ï¿½anxiety analysis code.Rï¿½ and ï¿½worry analysis code 2.Rï¿½ for the anxiety meta-analysis and worry meta-analysis respectively. The codes are written to run with the anxietydata and worrydata files respectively, described above.
DOI: 10.6084/m9.figshare.22956770.v1
title: Physical Activity in Childhood or Adolescence and Mental Health Outcomes linked to Flourishing at least 12 Months Later: A Systematic Review of 98 Prospective Cohort Studies

description: Data extraction file for systematic review entitled: Physical Activity in Childhood or Adolescence and Mental Health Outcomes linked to Flourishing at least 12 Months Later: A Systematic Review of 98 Prospective Cohort Studies
DOI: 10.17864/1947.330
title: Data supporting the article: 'Characteristics of desert precipitation in the UAE derived from a ceilometer dataset'

description: Dataset contains a summary of rainfall episode characteristics spanning the study period 2018-2020 at Al Ain International Airport (24°15' N, 55°37' E). Cloud position and cloud base PTU (pressure, temperature, and relative humidity) conditions, rainfall times and durations, in addition to surface conditions and derived rain droplet size and fall speeds. Ceilometer backscatter profile and potential gradient measurements for 15/03/2019 are included as a case study as used in Airey, M.W. et al. (2021), 'Characteristics of desert precipitation in the UAE derived from a ceilometer dataset', Atmosphere 12, 1245.
description: CL31 ceilometer, CS110 field mill, and SWS100 visibility sensor
DOI: 10.5281/zenodo.7795552
title: Dabrafenib plus trametinib versus anti-PD-1 monotherapy as adjuvant therapy in BRAF V600-mutant stage III melanoma after definitive surgery: a prospectively-powered multicenter, retrospective cohort study

description: <strong>Summary </strong> Background Both dabrafenib/trametinib (D/T) and anti-PD-1 monotherapy (PD-1) are approved adjuvant therapies for patients with stage III BRAF V600-mutant melanoma. However, there is still a lack of head-to-head comparative data. We aimed to describe efficacy and toxicity outcomes for these two standard therapies across melanoma centers. Methods This prospectively-powered multicenter, retrospective cohort study was conducted in 15 melanoma centers in Australia, China, Germany, Italy, Japan, UK, and US. We included adult patients with resected stage III BRAF V600-mutant melanoma who received either adjuvant D/T or PD-1. The primary endpoint was recurrence-free survival (RFS). Secondary endpoints included overall survival (OS), recurrence pattern and toxicity. Findings We included 598 patients with stage III BRAF V600-mutant melanoma who received either adjuvant D/T (n=393 [66%]) or PD-1 (n=205 [34%]) post definitive surgery between Jul 2015 and Oct 2022. At a median follow-up of 33 months (IQR 21-43), the median RFS was 51∙0 months (95%CI 41∙0-not reached [NR]) in the D/T group, significantly longer than 44∙8 (95%CI 28∙5-NR) in the PD-1 group (univariate: HR 0∙658, 95%CI 0∙498-0∙869, P=0∙003; multivariate: HR 0∙687, 95% CI 0∙512-0∙922, P = 0∙012), with comparable OS with PD-1 (multivariate, HR 1∙011, 95%CI 0∙637-1∙604, P&gt;0∙95). Similar findings were observed using a restricted-mean-survival-time model. D/T survival benefits were consistent in most subgroups, except for older, male patients and those with V600K mutation. Among those who experienced recurrence, the proportion of distant metastases was higher in the D/T cohort. D/T had a higher incidence of treatment modification due to adverse events (AEs) than PD-1, but fewer persistent AEs. Interpretation In patients with stage III BRAF V600-mutant melanoma post definitive surgery, D/T yielded better RFS than PD-1, with higher transient but lower persistent toxicity, and comparable OS. D/T is potentially a superior adjuvant option compared with PD-1.
DOI: 10.5281/zenodo.7795551
title: Dabrafenib plus trametinib versus anti-PD-1 monotherapy as adjuvant therapy in BRAF V600-mutant stage III melanoma after definitive surgery: a prospectively-powered multicenter, retrospective cohort study

description: <strong>Summary </strong> Background Both dabrafenib/trametinib (D/T) and anti-PD-1 monotherapy (PD-1) are approved adjuvant therapies for patients with stage III BRAF V600-mutant melanoma. However, there is still a lack of head-to-head comparative data. We aimed to describe efficacy and toxicity outcomes for these two standard therapies across melanoma centers. Methods This prospectively-powered multicenter, retrospective cohort study was conducted in 15 melanoma centers in Australia, China, Germany, Italy, Japan, UK, and US. We included adult patients with resected stage III BRAF V600-mutant melanoma who received either adjuvant D/T or PD-1. The primary endpoint was recurrence-free survival (RFS). Secondary endpoints included overall survival (OS), recurrence pattern and toxicity. Findings We included 598 patients with stage III BRAF V600-mutant melanoma who received either adjuvant D/T (n=393 [66%]) or PD-1 (n=205 [34%]) post definitive surgery between Jul 2015 and Oct 2022. At a median follow-up of 33 months (IQR 21-43), the median RFS was 51∙0 months (95%CI 41∙0-not reached [NR]) in the D/T group, significantly longer than 44∙8 (95%CI 28∙5-NR) in the PD-1 group (univariate: HR 0∙658, 95%CI 0∙498-0∙869, P=0∙003; multivariate: HR 0∙687, 95% CI 0∙512-0∙922, P = 0∙012), with comparable OS with PD-1 (multivariate, HR 1∙011, 95%CI 0∙637-1∙604, P&gt;0∙95). Similar findings were observed using a restricted-mean-survival-time model. D/T survival benefits were consistent in most subgroups, except for older, male patients and those with V600K mutation. Among those who experienced recurrence, the proportion of distant metastases was higher in the D/T cohort. D/T had a higher incidence of treatment modification due to adverse events (AEs) than PD-1, but fewer persistent AEs. Interpretation In patients with stage III BRAF V600-mutant melanoma post definitive surgery, D/T yielded better RFS than PD-1, with higher transient but lower persistent toxicity, and comparable OS. D/T is potentially a superior adjuvant option compared with PD-1.
DOI: 10.17864/1947.000378
title: Dynamics of cyprodinil and fludioxonil in sunflower (Helianthus annuus L.)

description: The aim of the study was to investigate the pesticide residue profiles of the two active ingredients fludioxonil and cyprodinil in different sunflower matrices including pollen and nectar. Therefore, sunflower plants were sprayed during flowering and at different developmental stages to assess the influence of time on residue expression. Extrafloral nectar, pollen, anther, florets and leaf samples were taken daily over the course of 1-2 weeks. Samples were analysed for residues of both active ingredients using LC-MS/MS.
DOI: 10.17864/1947.000375
title: Residue dynamics of cyprodinil and fludioxonil in pollen and nectar of courgette (Cucurbita pepo L.)

description: The aim of this study was to investigate and compare the residue profile in pollen, nectar, flowers, anthers, and leaves of courgette plants following a foliar spray application of two pesticides with contact and systemic properties. Therefore, glasshouse experiments were set up. Courgette plants were sprayed during flowering with cyprodinil and fludioxonil. Samples were taken daily over the course of two weeks and were analysed for residues of both active ingredients using LC-MS/MS.
DOI: 10.17864/1947.000377
title: The effect of temperature on residue levels in floral matrices

description: The aim of the study was to investigate the effect of temperature on pesticide residue levels in pollen and nectar. Therefore, courgette plants were sprayed during flowering with cyprodinil, a systemic active ingredient, and grown at different temperatures ranging from 20 to 30 degree Celsius. Nectar, pollen, anther, flower and leaf samples were taken daily over the course of 1 week. Samples were analysed for residues using LC-MS/MS.
DOI: 10.17864/1947.000376
title: Residue variability in pollen and nectar following application with different application techniques and at different sites

description: The aim of the experiments was to investigate pesticide residue profiles in different plant matrices following an application with cyprodinil and fludioxonil using different application techniques and under protected (glasshouse) and open field conditions. Courgette plants were sprayed during flowering with two active ingredients with systemic and contact properties. In the glasshouse the plants were sprayed either with an automated track sprayer or a hand-held sprayer. In the field, the plants were sprayed with a knapsack sprayer with boom. Nectar, pollen, anther, flower and leaf samples were taken daily over the course of 5 days. Samples were analysed for residues of both active ingredients using LC-MS/MS.
DOI: 10.57955/515c00b6-7eee-42e7-bf49-5923e4ba1178
title: Data for GRL paper

description: Data for GRL paper (placeholder)
DOI: 10.5281/zenodo.4606701
title: miRNA target finder training datasets

description: Datasets needed to run the Galaxy training: miRNA target finder in <em>Arabidopsis thaliana</em>
description: {"references": ["Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.", "Oh, Eunkyoo, et al. \"Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.\" elife 3 (2014): e03031.", "Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938", "PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.", "Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210."]}
DOI: 10.5281/zenodo.4647332
title: miRNA target finder training datasets

description: Datasets needed to run the Galaxy training: miRNA target finder in <em>Arabidopsis thaliana</em>
description: {"references": ["Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.", "Oh, Eunkyoo, et al. \"Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.\" elife 3 (2014): e03031.", "Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938", "PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.", "Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210."]}