cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3545880.v1
title: Simultaneous decrease of arsenic and cadmium in rice (<i>Oryza sativa</i> L.) plants cultivated under submerged field conditions by the application of iron-bearing materials

description: The Codex Alimentarius Commission has recently adopted maximum levels for inorganic arsenic (As; in 2014) and total cadmium (Cd; in 2006) in polished rice grains to maintain food safety and to decrease the risk to human health. As rice is a staple crop in Japan and monsoon Asian countries, reducing concentrations of As and Cd in rice is an urgent matter. In flooded conditions, Cd concentration in soil solution decreases whereas As concentration increases. Therefore, we aimed to evaluate the efficiency of iron-bearing materials to decrease As concentration in soil solution and rice (<i>Oryza sativa</i> L.) grain under submerged cultivation, while also considering Cd concentration. In experiments conducted in paddy fields in six regions, As concentrations in the soil solution during the cultivation period decreased in the following order: control (REF) &gt; steel converter furnace slag (SCS) &gt; non-crystalline iron hydroxide (FH) &gt; zero-valent iron (ZVI). The concentrations of As in brown rice were in the same order, with ZVI achieving particularly strong reduction. Cadmium concentrations were low, probably owing to submerged cultivation conditions. Application of iron-bearing materials slightly and insignificantly reduced the yields of brown rice and straw. Application of these materials did not have a significant negative impact on the quality of rice. Our data indicate that the application of iron-bearing materials effectively reduces As concentrations in soil solution and rice grains without negative effects on yield and quality, with a particularly powerful effect of ZVI which is possibly explained by arsenic sulfide formation.
DOI: 10.6084/m9.figshare.3545859
title: Investigation of idiomorphic ferrite and allotriomorphic ferrite using electron backscatter diffraction technique

description: A heat treatment for a vanadium-containing steel involving high-temperature austenitisation followed by two-stage isothermal holding was deliberately conducted to produce allotriomorphic ferrite (ALF), idiomorphic ferrite (IDF) and martensite. The resulting microstructures and crystallographic relationships with respect to the parent austenite grains were examined using the electron backscatter diffraction technique. Results indicated that IDF grains did not possess a specific orientation relationship (OR) with respect to the surrounding austenite matrix. The detailed substructures of IDF were also examined. In contrast, the ALF grains had an approximate Kurdjumov–Sachs OR with respect to one or both of the adjacent austenite grains; the latter case was termed a dual OR and was analysed in detail.
DOI: 10.6084/m9.figshare.3545859.v1
title: Investigation of idiomorphic ferrite and allotriomorphic ferrite using electron backscatter diffraction technique

description: A heat treatment for a vanadium-containing steel involving high-temperature austenitisation followed by two-stage isothermal holding was deliberately conducted to produce allotriomorphic ferrite (ALF), idiomorphic ferrite (IDF) and martensite. The resulting microstructures and crystallographic relationships with respect to the parent austenite grains were examined using the electron backscatter diffraction technique. Results indicated that IDF grains did not possess a specific orientation relationship (OR) with respect to the surrounding austenite matrix. The detailed substructures of IDF were also examined. In contrast, the ALF grains had an approximate Kurdjumov–Sachs OR with respect to one or both of the adjacent austenite grains; the latter case was termed a dual OR and was analysed in detail.
DOI: 10.6084/m9.figshare.3545853
title: Transflective BPIII mode with no internal reflector

description: A transflective device without reflector using room temperature blue phase III (BPIII) material is demonstrated in this study. In this device, the coupling of an induced birefringence and field-induced BP, relating the ordered orientation of the double-helix cylinders, causes the reflection and transmission. Compared with other reported transflective liquid crystal devices, the BPIII device shown here does not need any type of internal reflector. Well-matched voltage-dependent transmittance and reflectance curves can be obtained easily without considering the cell gap and incident wavelength. The total response time is less than 2 ms, which is also independent of the cell gap. The experimental results exhibit a simple way to get a transflective device with good ability based on the electro-optical properties of BPIII.
DOI: 10.6084/m9.figshare.3545853.v1
title: Transflective BPIII mode with no internal reflector

description: A transflective device without reflector using room temperature blue phase III (BPIII) material is demonstrated in this study. In this device, the coupling of an induced birefringence and field-induced BP, relating the ordered orientation of the double-helix cylinders, causes the reflection and transmission. Compared with other reported transflective liquid crystal devices, the BPIII device shown here does not need any type of internal reflector. Well-matched voltage-dependent transmittance and reflectance curves can be obtained easily without considering the cell gap and incident wavelength. The total response time is less than 2 ms, which is also independent of the cell gap. The experimental results exhibit a simple way to get a transflective device with good ability based on the electro-optical properties of BPIII.
DOI: 10.6084/m9.figshare.3545841.v1
title: Symmetric arena.MTS

description: locust marching in experimental arena
DOI: 10.6084/m9.figshare.3545762
title: Observations of multiple pelagic egg masses from small-sized jumbo squid (<i>Dosidicus gigas</i>) in the Gulf of California

description: Egg masses of ommastrephid squids are rarely found and not well studied. For the Humboldt squid, <i>Dosidicus gigas</i>, only a single egg mass has been scientifically documented in the wild. Little is known about the size and spatial or temporal distribution of egg masses, or the number of eggs they contain. In this study, we report observations of six egg masses laid in the Gulf of California in May 2015. Egg mass diameters were two to four times smaller in this study compared with the previously observed mass reported in 2008, consistent with the small and large sizes, respectively, of mature female squid captured during each study. Each egg mass contained 17,000–90,000 embryos, one to two orders of magnitude lower than that estimated for the large egg mass previously observed. Egg masses were observed at 9–14 m depth on or near a thermocline. Developmental stages of embryos and paralarvae differed between egg masses. No egg masses were observed in the 13 dives before or the four dives after these masses were found, suggesting that female spawning activity is probably spatially, or perhaps temporally, patchy. Developmental heterochronies in chromatophore development between <i>D. </i><i>gigas</i> and other ommastrephid squids are discussed. Amphipods and ciliates infested the majority of masses, which is the first documented case of biota associated with wild ommastrephid egg masses.
DOI: 10.6084/m9.figshare.3545762.v1
title: Observations of multiple pelagic egg masses from small-sized jumbo squid (<i>Dosidicus gigas</i>) in the Gulf of California

description: Egg masses of ommastrephid squids are rarely found and not well studied. For the Humboldt squid, <i>Dosidicus gigas</i>, only a single egg mass has been scientifically documented in the wild. Little is known about the size and spatial or temporal distribution of egg masses, or the number of eggs they contain. In this study, we report observations of six egg masses laid in the Gulf of California in May 2015. Egg mass diameters were two to four times smaller in this study compared with the previously observed mass reported in 2008, consistent with the small and large sizes, respectively, of mature female squid captured during each study. Each egg mass contained 17,000–90,000 embryos, one to two orders of magnitude lower than that estimated for the large egg mass previously observed. Egg masses were observed at 9–14 m depth on or near a thermocline. Developmental stages of embryos and paralarvae differed between egg masses. No egg masses were observed in the 13 dives before or the four dives after these masses were found, suggesting that female spawning activity is probably spatially, or perhaps temporally, patchy. Developmental heterochronies in chromatophore development between <i>D. </i><i>gigas</i> and other ommastrephid squids are discussed. Amphipods and ciliates infested the majority of masses, which is the first documented case of biota associated with wild ommastrephid egg masses.
DOI: 10.6084/m9.figshare.3545654.v1
title: Prevalence of dementia in Egypt: supplementary materials

description: Those materials are supplementary to the systematic review protocol.
DOI: 10.6084/m9.figshare.3545654.v3
title: Prevalence of dementia in Egypt: supplementary materials

description: Those materials are supplementary to the systematic review protocol.
DOI: 10.6084/m9.figshare.3545654.v2
title: Prevalence of dementia in Egypt: supplementary materials

description: Those materials are supplementary to the systematic review protocol.
DOI: 10.6084/m9.figshare.3545648
title: Sistema para reservas online en restaurantes

description: Desarrolla una propuesta de negocio “Reserv@me”, que propone ser una alternativa para el público usuario que utiliza aplicaciones móviles para permitirles realizar reservas de mesas en los restaurantes de manera fácil, gratis, segura, y que adicionalmente les genera beneficios económicos. En ese sentido, nuestra propuesta modifica la manera tradicional de asistir a restaurantes sin realizar reserva o tomando mucho tiempo en realizarla, así como en otros casos minimiza los tiempos de espera en el acceso a las mesas. Asimismo, nuestra visión empresarial se enfoca en ser reconocida en el mercado como una empresa líder a nivel nacional e internacional en el servicio de reservas en restaurantes, a través de la innovación tecnológica. Para atraer a nuestros clientes, es decir a los restaurantes, se plantea otorgar información considerada valiosa por éstos, acerca de las preferencias de los consumidores, frecuencia de asistencia, número de personas con quienes asiste a comer y otros; 2 complementariamente, para atraer al público usuario desarrollaremos estrategias promocionales muy intensas de publicidad en medios escritos y de comunicación masiva, así como promociones de ventas con un sistema de acumulación de puntos y bonos de descuento. La propuesta de negocio es viable, dependiendo del cumplimiento de nuestras estrategias de promoción definidas y nuestras estrategias de fidelización de los restaurantes y usuarios finales. <b> </b> <b>AUTOR :</b> <b>Pajuelo Pajuelo, Anibal Ismael</b>; <b>Maco Victoria, José Brando</b>; <b>Chavez Pérez, Jorge Antonio</b>; <b>Leandro Ramírez, Marlon Luis</b> <b>ASESORES:</b> <b>Dimitrijevic, Boris</b> <b>EDITORIAL :</b> <b>Universidad Peruana de Ciencias Aplicadas (UPC)</b> <b>FECHA DE PUBLICACIÓN :</b> nov-2015 <b>URL :</b> http://hdl.handle.net/10757/616985
DOI: 10.6084/m9.figshare.3545648.v1
title: Sistema para reservas online en restaurantes

description: Desarrolla una propuesta de negocio “Reserv@me”, que propone ser una alternativa para el público usuario que utiliza aplicaciones móviles para permitirles realizar reservas de mesas en los restaurantes de manera fácil, gratis, segura, y que adicionalmente les genera beneficios económicos. En ese sentido, nuestra propuesta modifica la manera tradicional de asistir a restaurantes sin realizar reserva o tomando mucho tiempo en realizarla, así como en otros casos minimiza los tiempos de espera en el acceso a las mesas. Asimismo, nuestra visión empresarial se enfoca en ser reconocida en el mercado como una empresa líder a nivel nacional e internacional en el servicio de reservas en restaurantes, a través de la innovación tecnológica. Para atraer a nuestros clientes, es decir a los restaurantes, se plantea otorgar información considerada valiosa por éstos, acerca de las preferencias de los consumidores, frecuencia de asistencia, número de personas con quienes asiste a comer y otros; 2 complementariamente, para atraer al público usuario desarrollaremos estrategias promocionales muy intensas de publicidad en medios escritos y de comunicación masiva, así como promociones de ventas con un sistema de acumulación de puntos y bonos de descuento. La propuesta de negocio es viable, dependiendo del cumplimiento de nuestras estrategias de promoción definidas y nuestras estrategias de fidelización de los restaurantes y usuarios finales. <b> </b> <b>AUTOR :</b> <b>Pajuelo Pajuelo, Anibal Ismael</b>; <b>Maco Victoria, José Brando</b>; <b>Chavez Pérez, Jorge Antonio</b>; <b>Leandro Ramírez, Marlon Luis</b> <b>ASESORES:</b> <b>Dimitrijevic, Boris</b> <b>EDITORIAL :</b> <b>Universidad Peruana de Ciencias Aplicadas (UPC)</b> <b>FECHA DE PUBLICACIÓN :</b> nov-2015 <b>URL :</b> http://hdl.handle.net/10757/616985
DOI: 10.6084/m9.figshare.3545597
title: harborSeal_land.rds

description: Land mask raster for demonstration of R package crawl functions to correct paths that cross land
DOI: 10.6084/m9.figshare.3545597.v1
title: harborSeal_land.rds

description: Land mask raster for demonstration of R package crawl functions to correct paths that cross land
DOI: 10.6084/m9.figshare.3545567
title: Dr Anand Kumar Biodata.docx.doc

description: This is my bio data<br>
DOI: 10.6084/m9.figshare.3545561
title: Regression models to predict mitochondria oxygen mass flux in the presence of the CNTs

description: Regression models to predict mitochondria oxygen mass flux in the presence of the CNTs
DOI: 10.6084/m9.figshare.3545561.v1
title: Regression models to predict mitochondria oxygen mass flux in the presence of the CNTs

description: Regression models to predict mitochondria oxygen mass flux in the presence of the CNTs
DOI: 10.6084/m9.figshare.3545519.v1
title: ds2.full.Tr.csv

description: Full dataset to create regression model for prediction of mitochondria oxygen mass flux in the presence of the CNTs.
DOI: 10.6084/m9.figshare.3545480.v1
title: Can Upstream Anthropogenic Activities Reshape the Tidal Influence on a Downstream Wetland? A case study in NW Costa Rica.

description: Presentation given at the Annual International Meeting of the American Society of Agricultural and Biological Engineering. July 2016.
DOI: 10.6084/m9.figshare.3545474
title: Expression and evolution of sex-biased genes (Datasets and Supplementary Information)

description: Datasets and Supplementary Information of the manuscript "Non-canonical expression patterns and evolutionary rates of sex-biased genes in a seasonal fish" from Machado <i>et al.</i><br>Datasets:EXPRESS gene expression levels.EDGER differentially expressed genes.DAVID functional enrichment analysis.PROTEINORTHO single-copy orthologs.CODEML sequences evolutionary rates.real-time PCR C<sub>q</sub> values.<br>Supplementary Information:Table S1. Gene Ontology enrichment analysis of biological processes FAT terms.Table S2. Sex-related genes expression levels in <i>S. pyrenaicus</i> gonads (with Gene IDs and S. pyrenaicus open reading frames indicated) assessed by RNA-seq.Figure S1. Relative gene expression assessed by real-time PCR for RNA-seq transcriptome validation.Figure S2. Expression of steroidogenic enzymes outside the breeding season, as derived from the transcriptome analysis.Figure S3. Gonad squash preparations.Figure S4. Phylogenetic trees of cyp19a1 paralogs and <i>foxl2 </i>and <i>foxl3 </i>genes.
DOI: 10.6084/m9.figshare.3545474.v1
title: Expression and evolution of sex-biased genes (Datasets and Supplementary Information)

description: Datasets and Supplementary Information of the manuscript "Non-canonical expression patterns and evolutionary rates of sex-biased genes in a seasonal fish" from Machado <i>et al.</i><br>Datasets:EXPRESS gene expression levels.EDGER differentially expressed genes.DAVID functional enrichment analysis.PROTEINORTHO single-copy orthologs.CODEML sequences evolutionary rates.real-time PCR C<sub>q</sub> values.<br>Supplementary Information:Table S1. Gene Ontology enrichment analysis of biological processes FAT terms.Table S2. Sex-related genes expression levels in <i>S. pyrenaicus</i> gonads (with Gene IDs and S. pyrenaicus open reading frames indicated) assessed by RNA-seq.Figure S1. Relative gene expression assessed by real-time PCR for RNA-seq transcriptome validation.Figure S2. Expression of steroidogenic enzymes outside the breeding season, as derived from the transcriptome analysis.Figure S3. Gonad squash preparations.Figure S4. Phylogenetic trees of cyp19a1 paralogs and <i>foxl2 </i>and <i>foxl3 </i>genes.
DOI: 10.6084/m9.figshare.3545471
title: De-identification - anonymization

description: De-identification, anonymization, pseudoanonymization, re-identification<br>National Institute of Standards and Technology (NIST) documentation declares that the use of these terms is still unclear. Words de-identification, anonymizatio_ and _pseudoanonymization_ are sometimes interchangeable, sometimes carrying subtle different meanings. To mitigate ambiguity, NIST use definitions from ISO/TS 25237:2008:<br>&gt; de-identification: “general term for any process of removing the association between a set of identifying data and the data subject.” [p. 3] anonymization: “process that removes the association between the identifying dataset and the data subject.” [p. 2] pseudonymization: “particular type of anonymization that both removes the association with a data subject and adds an association between a particular set of characteristics relating to the data subject and one or more pseudonyms.”1 [p. 5]<br>Brazilian portuguese literature largely lacks this terminology, and they are more often used in law or information technology. The utilization of these concepts in health care and research has a specific conceptualization. HIPAA (Health Insurance Portability and Accountability Act), US regulation of health data privacy protection, establishes standards for patient personal information (protected health information - PHI) handling by health care providers (covered entities).
DOI: 10.6084/m9.figshare.3545471.v1
title: De-identification - anonymization

description: De-identification, anonymization, pseudoanonymization, re-identification<br>National Institute of Standards and Technology (NIST) documentation declares that the use of these terms is still unclear. Words de-identification, anonymizatio_ and _pseudoanonymization_ are sometimes interchangeable, sometimes carrying subtle different meanings. To mitigate ambiguity, NIST use definitions from ISO/TS 25237:2008:<br>&gt; de-identification: “general term for any process of removing the association between a set of identifying data and the data subject.” [p. 3] anonymization: “process that removes the association between the identifying dataset and the data subject.” [p. 2] pseudonymization: “particular type of anonymization that both removes the association with a data subject and adds an association between a particular set of characteristics relating to the data subject and one or more pseudonyms.”1 [p. 5]<br>Brazilian portuguese literature largely lacks this terminology, and they are more often used in law or information technology. The utilization of these concepts in health care and research has a specific conceptualization. HIPAA (Health Insurance Portability and Accountability Act), US regulation of health data privacy protection, establishes standards for patient personal information (protected health information - PHI) handling by health care providers (covered entities).
DOI: 10.6084/m9.figshare.3545399
title: Differential proteogenomics applied to HCV-induced cryoglobulinemia

description: Graphical summaries of the concept and the findings of our study. Illustrations were modified from the resources distributed in the Togo picture gallery (http://g86.dbcls.jp/~togoriv/), licensed under CC-BY 4.0 ©Togo picture gallery by the Database Center for Life Science (DBCLS), Japan.
DOI: 10.6084/m9.figshare.3545399.v1
title: Differential proteogenomics applied to HCV-induced cryoglobulinemia

description: Graphical summaries of the concept and the findings of our study. Illustrations were modified from the resources distributed in the Togo picture gallery (http://g86.dbcls.jp/~togoriv/), licensed under CC-BY 4.0 ©Togo picture gallery by the Database Center for Life Science (DBCLS), Japan.
DOI: 10.6084/m9.figshare.3545339
title: Alcohol Use Disorders Identification Test

description: Datasheet (.csv) for Alcohol Use Disorders Identification Test <br>
DOI: 10.6084/m9.figshare.3545339.v1
title: datasheet_AUDIT.csv

description: Datasheet (.csv) for Alcohol Use Disorders Identification Test <br>
DOI: 10.6084/m9.figshare.3545339.v3
title: Alcohol Use Disorders Identification Test

description: Datasheet (.csv) for Alcohol Use Disorders Identification Test <br>
DOI: 10.6084/m9.figshare.3545339.v2
title: datasheet_AUDIT(Alcohol Use Disorders Identification Test).csv

description: Datasheet (.csv) for Alcohol Use Disorders Identification Test <br>
DOI: 10.6084/m9.figshare.3545330
title: 290 Genomes from the Mediterranean Sea: Supplemental Data

description: This dataset has been updated which you can read about here: https://bjtully.github.io/posts/2018/10/re-visiting-tmed-mags/ !!!! To accommodate that update, there is a new set of files added to this page:TMED.UpdatedRecords.xlsx - compares original genome completion statistics with new versions and identified source of changeTMED.UpdatedContigs.tar.gz - which contains the new genome contigs for the updated genomes<br>A series of data files for the tentatively titled "290 Metagenome-assembled Genomes from the Mediterranean Sea: a resource for marine microbiology" by Benjamin Tully, Elaina Graham, Rohan Sachdeva, and John Heidelberg at the University of Southern California. Data files include, all contigs from Minimus2 + Megahit output used for binning and community assessment, ≥2kb and ≥7.5kb; contig read counts per sample; the putative genome contigs and Prodigal-predicted nucleotide and protein putative CDS FASTA files; the ribosomal marker HMM profiles; reference genome markers; high quality genome markers; low completion bins, and contigs without a bin.
DOI: 10.6084/m9.figshare.3545330.v2
title: 290 Genomes from the Mediterranean Sea: Supplemental Data

description: A series of supplemental files for the tentatively titled "Ongoing Effort to Generate Metagenome-assembled Genomes from the <i>Tara Oceans</i> Dataset: 290 Genomes from the Mediterranean Sea" by Benjamin Tully, Elaina Graham, Rohan Sachdeva, and John Heidelberg at the University of Southern California. Data files include, the ribosomal marker HMM profiles, reference genome markers, high quality genome markers, final concatenated MUSCLE alignment, FastTree Newick file, contig read count data, relative abundance matrix for genomes from all samples, low completion bins, and contigs without a bin