cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.26dj4p
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abeliophyllum distichum Nakai, Abies guatemalensis Rehd., Acanthocereus chiapensis Bravo, Acanthocereus hirschtianus (K.Schum.) Lodé, Acanthocereus tetragonus (L.) Hummelinck, Acanthosyris annonagustata C.Ulloa & P.M.Jørg., Acianthera aberrans (Luer) Pupulin & Bogarín, Acianthera beyrodtiana (Kraenzl.) Karremans, Acianthera breedlovei Soto Arenas, Solano & Salazar, Acianthera brunnescens (Schltr.) Karremans, Acianthera butcheri (L.O.Williams) Pridgeon & M.W.Chase, Acianthera cabiriae Pupulin, G.A.Rojas & J.D.Zuñiga, Acianthera cachensis (Ames) Karremans, Acianthera capillaris (Lindl.) Pridgeon & M.W.Chase, Acianthera ciliata (Knowles & Westc.) F.Barros & L.R.S.Guim., Acianthera circumplexa (Lindl.) Pridgeon & M.W.Chase, Acianthera cogniauxiana (Schltr.) Pridgeon & M.W.Chase, Acianthera costaricensis (Schltr.) Pupulin & Karremans, Acianthera crassilabia (Ames & C.Schweinf.) Luer, Acianthera decipiens (Ames & C.Schweinf.) Pridgeon & M.W.Chase, Acianthera ellipsophylla (L.O.Williams) Pridgeon & M.W.Chase, Acianthera erinacea (Rchb.f.) A.Doucette, Acianthera fecunda Pupulin, G.A.Rojas & J.D.Zuñiga, Acianthera geminicaulina (Ames) Pridgeon & M.W.Chase, Acianthera gigantea (Lindl.) A.Doucette, Acianthera hamata Pupulin & G.A.Rojas, Acianthera hondurensis (Ames) Pridgeon & M.W.Chase, Acianthera inaequalis (Lindl.) F.Barros & L.R.S.Guim., Acianthera johnsonii (Ames) Pridgeon & M.W.Chase, Acianthera lepidota (L.O.Williams) Pridgeon & M.W.Chase)",
 "Country is Costa Rica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 270 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026181-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh3uqs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pteropus howensis Troughton, 1931)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071779-230224095556074/datasets/export for details.
DOI: 10.15468/dl.sxt83s
title: Occurrence Download

description: A dataset containing 818326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Tropaeolum L., Triumfetta L., Tripsacum L., Tripleurospermum Sch.Bip., Triplaris Loefl. ex L., Triodanis Raf., Triglochin Riv. ex L., Tridax L., Trianthema L., Triadica Lour., Trema Lour., Trapa L., Tragus Haller)"
 ]
}

 The dataset includes 818326 records from 2325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003945-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt8kws
title: Occurrence Download

description: A dataset containing 24278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaseolus lunatus L."
 ]
}

 The dataset includes 24278 records from 312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019808-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13380482
title: Illuminating oncogenic KRAS signaling by multi-dimensional chemical proteomics

description: Mutated KRAS is among the most frequent activating genetic alterations in cancer. Drug discovery efforts have led to inhibitors that block mutant KRAS activity. To better understand the molecular basis of their cytostatic rather than cytotoxic effects, we performed comprehensive dose-dependent proteome-wide target deconvolution, pathway engagement and protein expression characterization in response to KRAS, MEK, ERK, SHP2, and SOS1 inhibitors in pancreatic (KRAS G12C, G12D) and lung cancer (KRAS G12C) cell lines. Analysis of 688,716 dose-response curves available in ProteomicsDB revealed common and cell line-specific signaling networks dominated by KRAS activity. Time-dose experiments separated early ERK-driven from late CDK-mediated signaling leading to exit from the cell cycle. The transition occurred without substantial proteome re-modelling but extensive changes in phosphorylation and ubiquitinylation. Our resource highlights the complexity of KRAS signaling in cancer and places a large number of new proteins and their modifications into this functional context for further exploration.

Here, we provide all curve data processed with internal pipelines or CurveCurator v0.5.0. (https://github.com/kusterlab/curve_curator). All phospho proteome, whole proteome, ubiquitinome, and cysteine profiling data are in seperated zip folders. Within these folders, each subexperiment can be interactively reviewed. Next to each data set is the toml parameter file used to generate the curves.txt and dashboard.html files. The data structure and additional information separated by experiment is provided in the Meta file.
DOI: 10.5281/zenodo.13838590
title: Illuminating oncogenic KRAS signaling by multi-dimensional chemical proteomics

description: Mutated KRAS is among the most frequent activating genetic alterations in cancer. Drug discovery efforts have led to inhibitors that block mutant KRAS activity. To better understand the molecular basis of their cytostatic rather than cytotoxic effects, we performed comprehensive dose-dependent proteome-wide target deconvolution, pathway engagement and protein expression characterization in response to KRAS, MEK, ERK, SHP2, and SOS1 inhibitors in pancreatic (KRAS G12C, G12D) and lung cancer (KRAS G12C) cell lines. Analysis of 688,716 dose-response curves available in ProteomicsDB revealed common and cell line-specific signaling networks dominated by KRAS activity. Time-dose experiments separated early ERK-driven from late CDK-mediated signaling leading to exit from the cell cycle. The transition occurred without substantial proteome re-modelling but extensive changes in phosphorylation and ubiquitinylation. Our resource highlights the complexity of KRAS signaling in cancer and places a large number of new proteins and their modifications into this functional context for further exploration.

Here, we provide all curve data processed with internal pipelines or CurveCurator v0.5.0. (https://github.com/kusterlab/curve_curator). All phospho proteome, whole proteome, ubiquitinome, and cysteine profiling data are in separate zip folders. Within these folders, each subexperiment can be interactively reviewed. Next to each data set is the toml parameter file used to generate the curves.txt and dashboard.html files. The data structure and additional information separated by experiment are provided in the ReadMe.xlsx.

Additionally, we provide Supplementary Table S3-S6 as well as the Source Table for the 2D UMAP and the pairwise fold-change comparisons.
DOI: 10.15468/dl.hsu2aw
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.2.54_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Opiliones"
 ]
}

 The dataset includes 187 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019809-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggc5mh
title: Occurrence Download

description: A dataset containing 5617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "PublishingCountry is Denmark",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 5617 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019810-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7r4trb
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaseolus mungo L."
 ]
}

 The dataset includes 128 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019811-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15358454
title: xerosicyos_pubescens_spades_01.fasta.gz
DOI: 10.5281/zenodo.15358455
title: xerosicyos_pubescens_spades_01.fasta.gz
DOI: 10.15468/dl.3yup4e
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaseolus radiatus L."
 ]
}

 The dataset includes 58 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019815-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15128/r1jq085k049
title: Carbonara: A Rapid Method for SAXS-Based Refinement of Protein Structures [dataset]

description: Generative machine learning models for protein structure prediction are primarily trained on X-ray crystallography data, which captures proteins in crystal lattices that can deviate significantly from their native solution conformations. Biological small angle X-ray scattering (bioSAXS) offers valuable solution-state insights, but creating atomic models that rationalise this data remains challenging. Here we present Carbonara, a rapid computational pipeline that combines coarse-grained sampling with experimental constraints to efficiently identify solution-state conformations from an initial atomic model. We demonstrate Carbonara's effectiveness by refining an AlphaFold-predicted model of the DNA repair helicase, SMARCAL1, and a crystallographically determined structure of the antigen binding domains of the anti-hCD40 monoclonal antibody, ChiLob7/4, a clinically relevant immunostimulatory antibody. In both cases, Carbonara identifies physiologically relevant solution-state conformations separated from crystal-like predictions by large energy barriers, achieving in minutes what traditional MD simulations might not accomplish in weeks.
DOI: 10.6084/m9.figshare.28945841
title: Operationalizing Geographic Diversity for the Evaluation of AI‐Generated Content

description: This dataset contains content generated by six large language models, including GPT‐3.5, GPT‐4o, Mistral 7B, Mistral Large, Claude 3 Haiku, and Claude 3.5 Sonnet. Please refer to our paper for more details on the process of content generation.
DOI: 10.15468/dl.du5sng
title: Occurrence Download

description: A dataset containing 2352 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registro Flora de Cuesta Lo Prado / Cerro Bustamente / Cerro Lo Aguirre / Noviciado"
 ]
}

 The dataset includes 2352 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019817-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d68a2g
title: Occurrence Download

description: A dataset containing 7922 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario SQF"
 ]
}

 The dataset includes 7922 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019816-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2k3w8v
title: CCDC 2357217: Experimental Crystal Structure Determination

description: Related Article: Serafima S. Slobodskaia, Nikolay N. Efimov, Alina S. Galkina, Galina S. Tsebrikova, Andrey B. Ilyukhin, Irina S. Ivanova, Vladimir E. Baulin, Aslan Yu. Tsivadze|2025|New J.Chem.|49|7451|doi:10.1039/D5NJ00123D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3wdz
title: CCDC 2357221: Experimental Crystal Structure Determination

description: Related Article: Serafima S. Slobodskaia, Nikolay N. Efimov, Alina S. Galkina, Galina S. Tsebrikova, Andrey B. Ilyukhin, Irina S. Ivanova, Vladimir E. Baulin, Aslan Yu. Tsivadze|2025|New J.Chem.|49|7451|doi:10.1039/D5NJ00123D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kb244
title: CCDC 2363165: Experimental Crystal Structure Determination

description: Related Article: Gourav M. Upadhyay, Asim Swain, Esha H. Bhalodi, Prince Ravat, Ashutosh V. Bedekar|2025|J.Org.Chem.|90|5469|doi:10.1021/acs.joc.5c00085
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.94s6ye
title: Occurrence Download

description: A dataset containing 501984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus robur L.",
 "Year 2010-2025"
 ]
}

 The dataset includes 501984 records from 2469 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019804-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29114546
title: Shared Transcripts.zip

description: Data contains transcripts from study on the impact of Formula Student on Learning
DOI: 10.15468/dl.2d466r
title: Occurrence Download

description: A dataset containing 761406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Alliaria Heist. ex Fabr."
 ]
}

 The dataset includes 761406 records from 2466 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011056-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/xna-x3n-t23
title: Macrogastra ventricosa (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qch-na2-zpe
title: Cochlicopa lubrica (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lpz-80k-ce2
title: Aplus dorbignyi (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vj6-nc1-t0z
title: Truncatellina callicratis (Scacchi, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bh1-h75-4rs
title: Pagodulina sparsa Pilsbry, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z4q-akm-hxt
title: Macrogastra plicatula (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b50-lhh-ggh
title: Clausilia bidentata bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bsc-n24-xvc
title: Vallonia costata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3y9-arj-k9k
title: Solatopupa similis (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vra-maj-ryq
title: Rupestrella philippii (Cantraine, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b2g-eeg-2al
title: Chondrina Reichenbach, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rx4-s0e-m4a
title: Ruthenica filograna (Rossmässler, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xtl-hhm-qqx
title: Chondrina farinesii (Des Moulins, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qh4-za5-e7j
title: Ena montana (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x47-jgp-y17
title: Arion intermedius Normand, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/61v-bhz-ckh
title: Chondrula bergeri (J. R. Roth, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dxj-9gg-d9q
title: Meijeriella Bank, 1985

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lve-hp1-nwc
title: Bulimulidae Tryon, 1867

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t9k-48e-4z3
title: Zaptyx strictaluna (O. Boettger, 1877)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fpw-jf1-tn3
title: Vertigo angustior Jeffreys, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jnr-qta-lyr
title: Carychium minimum O. F. Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lt2-cyt-l6b
title: Clausilia dubia Draparnaud, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7vv-e62-0gr
title: Gomphroa boissii (Dupuy, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xhw-4j6-xf0
title: Vallonia enniensis (Gredler, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4q5-gc2-y2r
title: Vertigo pusilla O. F. Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9d-93j-4dv
title: Truncatellina cylindrica (A. Férussac, 1807)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vbq-6md-26b
title: Vertigo antivertigo (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yam-47h-5bm
title: Arion intermedius Normand, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1gp-vd8-2cy
title: Clausilia bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vdf-vp7-j9w
title: Granaria variabilis (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/278-vp5-aba
title: Clausiliidae J. E. Gray, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l9w-m39-8gh
title: Clausilia dubia vindobonensis A. Schmidt, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jqk-wre-92m
title: Clausilia bidentata bidentata (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4k6-0hp-zgw
title: Pupilla triplicata (S. Studer, 1820)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7mn-7t1-zpa
title: Macrogastra ventricosa major (Rossmässler, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lde-6q3-v3v
title: Chondrina kobelti (Westerlund, 1887)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mjf-jnl-4nh
title: Merdigera obscura (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25381/cput.28540454
title: Comparative study on biological factors influencing the development of alloimmunization in sickle cell disease in Ile-Ife, Nigeria.

description: Ethical reference number: CPUT/HWS-REC 2021/H32 (renewal)This is the first study in western Nigeria to examine the biological factors influencing alloimmunization in sickle cell disease (SCD) patients. The research examined inflammatory and oxidative stress markers, red cell phenotypes, and nutritional status in transfused SCD patients, providing critical insights into alloimmunization mechanisms.Findings revealed elevated oxidative stress and inflammatory markers in multi-transfused SCD patients, correlating with increased antibody formation. Haematological assessments showed significantly higher platelet counts and neutrophil activity, indicating inflammation. Nutritional analysis highlights deficiencies in vitamins, minerals, and dietary fibre, with 76.3% of participants failing to meet daily calorie requirements, exacerbating alloimmunization risks.This pioneering study expands the knowledge in haematology and blood transfusion science, offering novel insights into the interplay between inflammation, oxidative stress, and alloimmunization in SCD. It underscores the need for comprehensive patient care, integrating nutritional intervention, inflammation control, and improved transfusion strategies. The work provides a foundation for further research and enhanced clinical management of SCD patients.