cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29105291.v1
title: Applying borderline methods for setting standards in Objective Structured Clinical Examination: the first case in undergraduate medical program in Vietnam

description: <b>Abstract</b><b>Introduction:</b> Many medical schools in Vietnam have frequently used the arbitrary 50% score of checklist as passing scores in objective structured clinical examination (OSCE). As part of the competency-based education, we apply the borderline methods in this study to determine OSCE passing scores and to demonstrate whether cut-off scores of borderline methods significantly differ from the arbitrary 50% score.<b>Methods: </b>This descriptive study applied the Borderline Group Method (BGM) and Borderline Regression Method (BRM) to determine OSCE passing scores. Our OSCE exam consists of five stations and was administered to 406 second-year medical students in 2023. At each station, an examiner rated a checklist score and a global score. We use pair t-tests for the comparison of passing scores between scores of 50%, borderline group mean, borderline group median, and BRM scores.<b>Results:</b> The passing scores calculated according to the mean of BGM and BRM at 5 stations were 68-86.5 and 69.3-86.3, respectively. There was a statistically significant difference in passing scores between the 50% score and the mean/median of BGM as well as BRM (p=0.000) by pair t-test. There was no significant difference in passing scores between the mean or median of BGM and BRM (p=0.307 and p = 0.921).<b>Conclusion: </b>The passing scores determined by borderline methods were significantly higher than the arbitrary 50% score of checklist. Borderline methods can be used as appropriate standard-setting methods for OSCE in second-year medical students and should be considered for implementation in OSCE examinations for subsequent-year medical students at our university.
DOI: 10.17632/rw8prsvtsd
title: QuantiGene Plex assay

description: Preliminary data for the selection of housekeeping genes suitable for our cells to be used as normaliser for the full experiment that will allow us to identify genes potentially modified by the infection with ZIKV and counteracted with the heparin treatment. 
Instead of performing RNAseq analyses, we decided to opt for QuantiGene Plex (Thermofisher). This test incorporate branched DNA technology for accurate gene expression profiling. Branched DNA assays allow direct measurement of RNA transcripts using signal amplification (Luminex 200 technology) rather than target amplification. 
We decided to include 4 conditions: uninfected, uninfected + heparin, ZIKV and ZIKV + heparin, and three time points: 4, 24, 48 h post infection, for a total of 12 samples. We performed three 1:4 serial dilutions of all samples. Then, we load the plate with all undiluted samples + all dilutions made. We performed the experiment according to the manufacturer’s instructions (Thermofisher). Thanks to the Thermofisher free online software, we performed the analyses of the data we obtained from the Luminex reading. 
From the analyses file, we highlighted the data that were saturated (over 20000 reads), then we remove data from "uninfected + heparin 4h" and "ZIKV 4h" since the preparation was not perfect and the data were not reliable (incorrect serial dilution). We selected the samples in which genes are not saturated (dilution 1:64), and we performed the geometric mean (GEOMEAN) of all genes expressed by the same sample. We divided each values by its GEOMEAN and we calculated the standard deviation (SD). We selected the genes with the lower SD.
This experiment allowed us to identify the best 4 housekeeping genes: the glyceraldehyde-3-phosphate dehydrogenase (GAPDH), phosphoglycerate kinase 1 (PGK1), ubiquitin C (UBC) and the ATPase H+ transporting the A subunit V1 (ATP6V1A) .
DOI: 10.17632/v4w37cccc7
title: Research Futures 2.0 - survey of researchers

description: Two studies completed since the original project in 2018 to provide an evolving view:
1. 2020 a survey of 1,066 researchers. Fieldwork July 2021.
2. 2021 a survey of 1,173 researchers. Fieldwork August 2021.

Methodology was random sample of researchers (unbranded) for both waves.

Many questions were asked in both studies to provide comparative data to show change over time.

Survey tool: Online survey available in English only.
DOI: 10.17632/xv3nh6xcg7
title: Stress-strain database of triaxial and uniaxial tests on lab-grown and field sea ice samples under various test conditions

description: In this database, peak and residual stress and strain values along with their test conditions are collected from literature detailing field and laboratory-based sea ice compression experiments. 
These data are used to develop models of stress-strain relationships. For analysis, the peak stress is considered as the maximum stress value attained during the test, corresponding to the highest point on the stress-strain curve. The residual stress is quantified as the stress value at which the curve levels out following substantial deformation. This residual condition signifies a quasi-steady-state where stress remains relatively constant at a positive value with continued strain or drops abruptly indicating a secondary fracture. For specimens that exhibited abrupt failure, residual stresses were assumed to be zero for the purposes of analysis. These values were either directly reported or extracted manually from curves in published figures.
Following assumptions should be considered while reviewing data:
- The biaxial compression tests are assumed as triaxial.
- Pure, fresh and distilled water samples are considered as freshwater.
- “Field” refers to the specimens directly extracted from the natural sea and lake ice.
- “Laboratory”, represents the specimens grown in a laboratory.
- Frazil, granular, crushed, atmospheric ices are all assumed as polycrystalline.
- Laboratory-grown freshwater and snow ice samples are categorized as “New”.
- In reference to the average grain size reported in Table 3, it is typically specified for granular ice. However, for columnar ice, there is no standardized method for measuring and calculating the average grain size. In this study, the average column width was considered as a proxy for grain size. 
- Confinement ratio is the maximum value between σ2/σ1 and σ3/σ1 (σ1 is axial stress; σ2 and σ3 are lateral stresses). When the confinement is reported as a constant pressure (a constant stress in MPa, uniformly applied in lateral direction), this parameter is assumed as 0.
- Specimen Preparation temperature assumed as test temperature, when it was not reported.
This database should be used in conjunction with testing and conditions described in the paper titled "Data-Driven Modeling of Sea Ice Behavior Using Stress-Strain Database and Machine Learning".
DOI: 10.6084/m9.figshare.12543050.v1
title: Feature Frequency Profile-based phylogenies are inaccurate

description: Methods, codes and results for manuscript Feature Frequency Profile-based phylogenies are inaccurate.
DOI: 10.6084/m9.figshare.7466630.v1
title: N44 version by Sigurd

description: This version of the Model is based upon Silje's version, but uses the tuning from Knut's version
DOI: 10.17632/33sb346t48
title: Raw Data for: Failure mode classification and deformability evaluation for concrete beams reinforced with FRP bars 

description: The dataset contains experimental and analytical capacity of beams internally reinforced with fiber reinforced bars. The analytical model used is described in detail in the paper "Failure mode classification and deformability evaluation for concrete beams reinforced with FRP bars"  accepted in "Composite Structures".
DOI: 10.6084/m9.figshare.19404032.v1
title: clinical data(submit).xls

description: This data set is a clinical data set of patients with gallbladder cancer.
DOI: 10.6084/m9.figshare.21656132.v1
title: Artigos incluídos (referências e metadados) / Articles included (references and metadata)

description: Os metadados e referências apresentados se referem aos artigos incluídos na revisão sistemática de escopo: "Intervenções para aumentar a criatividade no Século XXI". <br> The metadata and references presented refer to the articles included in the systematic scoping review: "Interventions to Enhance Creativity in the 21st Century".
DOI: 10.6084/m9.figshare.24980994.v1
title: Annotated dataset for Aspect-based sentiment analysis collected from Trustpilot platform

description: Annotated dataset of English reviews collected from the online review platform Trustpilot. The reviews concern five shops that exclusively operated online stores at the time of data collection. The stores included in the analysis are: Zalando, Wish, SHEIN, Boozt, and Nelly. The reviews were written between 2013 and 2021. The final dataset contains 2782 data points. The reviews are annotated based on 14 aspects.The dataset is originally created for the following publication:Laleh Davoodi, József Mezei, Markku Heikkilä: Aspect-based sentiment classification of user reviews to understand customer satisfaction of e-commerce platforms. Published in: Electronic Commerce Research
DOI: 10.6084/m9.figshare.25488112.v2
title: Bringing proteomics to bear on male fertility: key lessons

description: Male infertility is a major public health concern globally. Proteomics has revolutionized our comprehension of male fertility by identifying potential infertility biomarkers and reproductive defects. Studies comparing sperm proteome with other male reproductive tissues have the potential to refine fertility diagnostics and guide infertility treatment development. This review encapsulates literature using proteomic approaches to progress male reproductive biology. Our search methodology included systematic searches of databases such as PubMed, Scopus, and Web of Science for articles up to 2023. Keywords used included ‘male fertility proteomics,’ ‘spermatozoa proteome,’ ‘testis proteomics,’ ‘epididymal proteomics,’ and ‘non-hormonal male contraception.’ Inclusion criteria were robust experimental design, significant contributions to male fertility, and novel use of proteomic technologies. Expert analysis shows a shift from traditional research to an integrative approach that clarifies male reproductive health’s molecular intricacies. A gap exists between proteomic discoveries and clinical application. The expert opinions consolidated here not only navigate the current findings but also chart the future proteomic applications for scientific and clinical breakthroughs. We underscore the need for continued investment in proteomic research – both in the technological and collaborative arenas – to further unravel the secrets of male fertility, which will be central to resolving fertility issues in the coming era.
DOI: 10.6084/m9.figshare.9845015.v2
title: 20 case studies on AI evaluating the impact of AI on insurance

description: 20 case studies on AI evaluating the impact of AI on insurance
DOI: 10.17632/r9t7hh7cy3
title: Data for: Image-Text Inconsistency and Product Evaluation on E-Commerce Websites

description: Image-text inconsistency
DOI: 10.17632/yf9msf45zx
title: 甲骨文所有的沈字 (Oracle Bone Inscriptions 沈 Character)

description: 甲骨文所有的“沈”字分析。分析的目標是斷定“沈”字表示一個還是幾個詞。
DOI: 10.6084/m9.figshare.28082750.v6
title: Cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) in the general population

description: This project aims to conduct cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) for the general population. It involves the translation, cultural adaptation, and evaluation of the scale's reliability and validity in the Indonesian context, focusing on measuring stigma towards People Living with HIV/AIDS (PLWHA). The project also analyzes stigma differences across various sociodemographic backgrounds to enhance understanding of the social challenges faced by PLWHA in Indonesia.
DOI: 10.17632/h9zbztrxsc
title: Scripts and data for manuscript "Disparification and extinction trade-offs shaped the evolution of Permian to Jurassic Odonata"

description: R scripts and data associated with the manuscript : Deregnaucourt, I., Bardin, J., Villier, L., Julliard, R., Béthoux, O., Disparification and extinction trade-offs shaped the evolution of Permian to Jurassic Odonata, IScience (2023), doi: https://doi.org/10.1016/j.isci.2023.107420.
DOI: 10.6084/m9.figshare.28706036.v1
title: Appendix 1 show the Content Validity Indexes for the Dropout and Career Change Intention Scale

description: Appendix 1 show the Content Validity Indexes for the Dropout and Career Change Intention Scale
DOI: 10.6084/m9.figshare.8832233.v1
title: Table S3 Physiological measurements (Mean±SD) at different time during exposure under different experimental conditions..docx

description: the effects of different time on human physiological responses
DOI: 10.17632/ph47c6gcpx
title: Examining Business Cycles and Optimal Monetary Policy in a Regional DSGE Model

description: The Replication file includes the data used for the model, the code to estimate the regional model and code to replicate the figures and tables of the published paper, abstract below. 

I construct a dynamic stochastic general equilibrium (DSGE) model consisting of geographic regions and use state level data to estimate the effects that monetary policy and financial shocks have on the four census regions of the United States. The DSGE model I use is constructed around a centralized monetary authority and financial market with regional output, labor and investment markets. I find significant heterogeneity amongst the regional structural parameters of the model, creating different business cycle dynamics for the four regions. The estimated model aligns with other economic studies that suggest that monetary shocks have a greater impact in certain geographic regions in terms of employment, inflation, wages, and consumption. Simulating the estimated model, I find that monetary policy that considers the regional variation in output and inflation can significantly lower the volatility around national output and inflation. The paper’s results suggest that regional macroeconomic conditions should be considered in monetary policy decisions.
DOI: 10.6084/m9.figshare.21384699.v1
title: Ball-and-stick models of the butane molecule

description: Butane or n-butane is an alkane. Butane is a gas at room temperature and atmospheric pressure. Butane is a highly flammable, colorless, easily liquefied gas that quickly vaporizes at room temperature. The density of butane is highly dependent on temperature and pressure in the reservoir. When oxygen is plentiful, butane burns to form carbon dioxide and water vapor; when oxygen is limited, carbon or carbon monoxide may also be formed. Butane is denser than air. The maximum adiabatic flame temperature of butane with air is 1,970 degrees Celsius. Contributor: Junjie Chen, ORCID: 0000-0001-5055-4309, E-mail address: komcjj@gmail.com, Department of Energy and Power Engineering, School of Mechanical and Power Engineering, Henan Polytechnic University, 2000 Century Avenue, Jiaozuo, Henan, 454000, P.R. China
DOI: 10.6084/m9.figshare.24100077.v4
title: In this excel file you can find the data extracted from literature about the presence of 248 fish species on native seagrasses in the Mediterranean Sea.

description: In this excel file you can find the data extracted from literature about the presence of 248 fish species on native seagrasses in the Mediterranean Sea.
DOI: 10.6084/m9.figshare.25499185.v1
title: Ottelai_alismoides_Predicted genes - nucleotide sequences

description: Genome assembly of Ottelia alismoides, a multiple-carbon utilization aquatic plant
DOI: 10.6084/m9.figshare.28876139.v1
title: Hongoboletus americanus ITS alignment

description: ITS alignment for Hongoboletus americanus
DOI: 10.17632/fpkm9jt8p5
title: Concentrations of biomass burning tracers and carbonaceous components-Fairbanks-Alaska_2008-2009

description: Concentrations of biomass burning organic tracers and carbonaceous components in Fairbanks aerosols, Alaska during June 2008 to June 2009.
DOI: 10.17632/rg5cssgmwg
title: Combining clinical notes with structured electronic health records enhances the prediction of mental health crises

description: Processed data and code generate the results of the manuscript.
DOI: 10.6084/m9.figshare.24637938.v1
title: Melanoma dataset

description: <b>Dataset description</b>Study population: all incident cases of invasive cutaneous malignant melanoma (CMM) recorded in the Veneto Cancer Registry (Registro Tumori del Veneto – RTV) in 2015 (1,050 cases) and 2017 (1,205 cases) for which the number of mitoses was available.Study variables: sociodemographics (age and sex); clinico-pathological features (histological subtypes of CMM, tumor site, Breslow thickness, Clark level, CMM growth phase, ulceration, regression, tumor-infiltrating lymphocytes (TIL), mitotic count (number of mitoses per mm<sup>2</sup>, T, N, and M AJCC stages at diagnosis (8th edition), and the number of positive lymph nodes after sentinel lymph node biopsy (SLNB)).CSV file legend:<b>ID_prog</b>subject unique identifier<b>age</b>age (in years) at CMM diagnosis<b>sex</b>"F" = female, "M" = male<b>year</b>year of diagnosis<b>histology</b>histological subtypes of CMM<b>site</b>primary tumor site<b>pT</b>AJCC (8th edition) T value<b>pN</b>AJCC (8th edition) N value<b>pM</b>AJCC (8th edition) M value<b>TNM_stage</b>AJCC (8th edition) TNM stage<b>breslow</b>Breslow thickness (in mm)<b>clark</b>Clark level<b>ulceration</b>presence of ulceration<b>regression</b>presence of regression<b>til</b>presence of tumor-infiltrating lymphocytes (TIL)<b>growth</b>CMM growth phase<b>positive_slnb</b>number of positive lymph nodes after sentinel lymph node biopsy (SLNB)<b>mitoses</b>number of mitoses per mm<sup>2</sup><b>status</b>survival status (updated on December 31st, 2020): 0 = alive, 1 = dead<b>survival</b>follow-up time from CMM diagnosis (in days, updated on December 31st, 2020)<br>Correspondence to Claudia Cozzolino, Soft-Tissue, Peritoneum, and Melanoma Surgical Oncology Unit, Veneto Institute of Oncology IOV- IRCCS, Padova, Italy. E-mail: claudia.cozzolino@iov.veneto.it
DOI: 10.6084/m9.figshare.28152035.v2
title: <b>Chinese Seed Trait Database: A curated resource for diaspore traits in the Chinese flora</b>

description: This is a curated repository that compiles an extensive array of diaspore traits for plant species in China -- Chinese Seed Trait Database ( CSTD ). It has so far been assembled from 694 sources in the Chinese language, comprises more than 110,000 records across 118 seed traits for 3,897 plant species. The data spans all major axes of the seed trait spectrum, encompassing morphological, quantitative, phenological, physiological, chemical, and dispersal traits. This initiative overcomes language barriers and enhances the completeness of global seed trait data, ultimately providing an invaluable resource for advancing large-scale ecological research.
DOI: 10.6084/m9.figshare.29042882.v1
title: Earth-Sun Dynamics

description: This DATASET includes <b>velocity</b>, <b>acceleration</b>, <b>jerk</b>, and <b>snap </b>(1st to 4th derivatives of position) for the <i>solar declination,</i> but also for the <i>Equation of Time</i>. The excel file I provide starts by assessing solar declination and the Equation of Time according to the geometric model of Spencer (1971), which is based on Fourier Series. Then the first to fourth time derivatives (time in days) of both was calculated. The data is based on a solar sundial noon analemma, so the Equation of Time has switched signs. Solar declination was not switched in signs.This data follows the dynamic of the "path of the subsolar point" (analemma) as a dynamic cycle and relates such path with another dynamical cycle: <i>Earth's rotation</i>. I assessed Earth's rotational speed, and Earth's rotational acceleration, then the speed and acceleration of the subsolar point (or Natural Beam radiation speed) across longitude.A separated EXCEL's sheet within the same file was used to annotate the name for each of the variables, as well as all the formulae used to estimate each individual cell of the data file.Thank you for reading, enjoying, interpreting and using these data. José A. RuedaOaxaca, Mexico. May 12th, 2025.<br>...Spencer, J.W. (1971) Fourier Series Representation of the Position of the Sun. Search, 2, 162-172.
DOI: 10.6084/m9.figshare.4214376.v1
title: Data from Zebrafish embryonic development is induced by carp sperm

description: Data collected during the experiments described
DOI: 10.17632/2p8ys6tvgy
title: KBG syndrome-associated protein ANKRD11 regulates SETD5 expression to modulate rRNA levels and translation. Sashiyama et al.

description: The haploinsufficiency of ANKRD11 or SETD5 is implicated in KBG syndrome characterized by intellectual disability, autism spectrum disorders, and skeletal abnormalities. However, the molecular mechanisms linking these protein deficiencies to KBG syndrome are not fully understood. Here we report that ANKRD11-deficient neural cells exhibit reduced ribosomal RNA (rRNA) and translational activity. ANKRD11 is primarily localized outside the nucleolus, where rDNA transcription occurs, suggesting an indirect role in regulating rRNA expression. Instead, ANKRD11 increases SETD5 expression known to enhance rRNA production. Mechanistically, ANKRD11 interacts with the Setd5 promoter, recruiting WDR5, a component of the histone H3 lysine 4 (H3K4) methyltransferase complex involved in transcriptional activation. Correspondingly, reduced H3K4 methylation on the Setd5 promoter correlates with diminished SETD5 expression in ANKRD11-deficient cells Overexpression of ANKRD11 or SETD5 restores rRNA levels and translational activity. These findings underscore the role of the ANKRD11-SETD5 axis in alleviating KBG syndrome pathogenesis, offering insights into potential therapeutic targets.
DOI: 10.17632/5dw4gxyh93
title: Data for: Health Care Reform, Adverse Selection and Health Insurance Choice

description: The Social Protection Survey (EPS) is the largest and oldest longitudinal survey that exists in Chile, with a sample of around 16,000 respondents distributed in all regions of the country. The questionnaire includes questions on labor and social security with detailed information in areas such as education, health, social security, job training, wealth and assets, family history and household information.