cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3595841_d3
title: Additional file 3: of Community health center provider ability to identify, treat and account for the social determinants of health: a card study

description: Card data by location. Description of data: Data is broken down by location to show each card that was completed. Each CHC site has two corresponding data sheets. The first sheet contains the raw data including totals which show how many SDH was recorded. The second sheet contains tables with counts for each SDH and how often it was billed and/or diagnosed. (XLSX 235 kb)
DOI: 10.15468/dl.ym6q2m
title: Occurrence Download

description: A dataset containing 991 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vernonanthura tweedieana (Baker) H.Rob."
 ]
}

 The dataset includes 991 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032334-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3595874_d4
title: Additional file 2: of Proposal of supervised data analysis strategy of plasma miRNAs from hybridisation array data with an application to assess hemolysis-related deregulation

description: R codes for user-defined functions. (R 15Â kb)
DOI: 10.6084/m9.figshare.c.3595874_d5
title: Additional file 1: of Proposal of supervised data analysis strategy of plasma miRNAs from hybridisation array data with an application to assess hemolysis-related deregulation

description: R codes for implementing the described analyses (sample processing, data pre-processing, class comparison and class prediction). Caliper matching was implemented using the nonrandom package; the t- and the AD tests were implemented using the stats package and the adk package, respectively. Notice that the updated package for implementing the AD test is kSamples. As regards the bootstrap selection and the egg-shaped plot, we respectively modified the doBS and the importance igraph functions, both included in the bootfs package. For the SVM model we used the e1071 package. (R 12Â kb)
DOI: 10.6084/m9.figshare.c.3595901_d2
title: MOESM4 of A transgenerational role of the germline nuclear RNAi pathway in repressing heat stress-induced transcriptional activation in C. elegans

description: Additional file 4. Lists of HRDE-1-repressed genes (∆mRNA [hrde-1/WT] ≥ 2.0 [FDR ≤ 0.1]) at 15˚C, 23 °C, and p15 °C.
DOI: 10.15468/dl.j353fx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pisodonophis sangjuensis Ji & Kim, 2011",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032337-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3595898_d4
title: Additional file 3 of Robust and efficient parameter estimation in dynamic models of biological systems

description: Numerical data. This file is a spreadsheet containing the numerical data used for the models calibration and cross-validation. (ODS 891 kb)
DOI: 10.6084/m9.figshare.c.3595937_d4
title: Additional file 15: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Primer name and their sequences used in this study for RT-qPCR validation. This file contains 32 RT-qPCR primer pair sequences that were used to validate RNAseq expression data. Corresponding gene name and descriptions are also included here. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3595952_d3
title: Additional file 3: Table S3. of Determinants encoding fimbriae type 1 in fecal Escherichia coli are associated with increased frequency of bacteriocinogeny

description: Colicin gene sequences deposited in the GenBank/EMBL/DDBJ. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3595937_d5
title: Additional file 6: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed up-regulated genes at 20 DPA in MD52ne. Seven hundred seventy four differentially expressed up-regulated genes at 20 DPA in MD52ne are included in this table. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 91Â kb)
DOI: 10.6084/m9.figshare.c.3595964_d1
title: MOESM1 of A framework for evaluating the costs of malaria elimination interventions: an application to reactive case detection in Southern Province of Zambia, 2014

description: Additional file 1. Costing analysis workbook.
DOI: 10.6084/m9.figshare.c.3595937_d6
title: Additional file 2: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed genes at 15 DPA between MD52ne and MD90ne. This table contains 4005 allotetraploid cotton genes that differentially significantly express between MD52ne and MD90ne in 15 DPA developing fibers. The threshold absolute value of log2 ratio was ≥ 1 and p value ≤ 0.05. Comparison of expression level between MD52ne and MD90ne is also included as fold change. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 428 kb)
DOI: 10.15468/dl.3ap4tn
title: Occurrence Download

description: A dataset containing 60716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "GadmGid is one of (CAN.1.16.4_1, CAN.1.16.19_1, CAN.1.16.12_1, CAN.1.16.21_1)",
 "TaxonKey is Chordata",
 "Year 2020-2024"
 ]
}

 The dataset includes 60716 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032336-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3595937_d8
title: Additional file 11: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Names of the important genes related to cotton fiber cell wall development are located near the identified QTL regions. This table contains differentially expressed genes from RNA-seq data that physically located near the two previously reported QTLs associated with BFS and UHML located on chromosomes 03 and 24, respectively by Islam et al. 2014 [49]. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3595976_d2
title: Additional file 2: of Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

description: Blood cell type-specific expressed gene sets. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3595976_d9
title: Additional file 7: of Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

description: Ranked gene list by GSEA (TCZ analysis). (XLSX 984 kb)
DOI: 10.6084/m9.figshare.c.3596033_d1
title: Additional file 10: Table S6. of Shared genetic control of expression and methylation in peripheral blood

description: Genomic position of the methylation probes from the final correlation list. (CSV 97 kb)
DOI: 10.6084/m9.figshare.c.3596036_d1
title: Additional file 3: of Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

description: Appendix 3. The Q-Q plots of weight and length generated in GWA analysis. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.c.3596063_d1
title: Additional file 1: Table S1. of Yogic breathing when compared to attention control reduces the levels of pro-inflammatory biomarkers in saliva: a pilot randomized controlled trial

description: Changes in salivary levels of pro-inflammatory biomarker panel in Yogic Breathing (YB) group when compared with Attention Control (AC) group. Saliva samples from both groups were collected at 0, 5, 10, 15 and 20 min were analyzed multiplex assay as explained under Methods. Data expressing levels of IL-1Î˛, IL-1RA, IL-6, IL-8, IL-10, IL-17, IP-10, MCP-1, MIP-1b, and TNF-alpha (pg/mL) from all the individuals from YB and AC groups at each time point are presented. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3596033_d11
title: Additional file 16: Table S7. of Shared genetic control of expression and methylation in peripheral blood

description: Results of the association analysis between shared e/mSNPs and same chromosome probe pairs with a shared QTL(s). After selecting all the overlapping SNPs at nominal 10-5 association p-value threshold, we pruned the list to contain only SNPs with the lowest p-value from both the expression and methylation association analysis. (CSV 130 kb)
DOI: 10.6084/m9.figshare.c.3596075_d1
title: Additional file 3: of Genetic origin and composition of a natural hybrid poplar Populus × jrtyschensis from two distantly related species

description: Nucleotide variation, haplotype diversity and neutrality tests at eight nuclear loci in (a) P. nigra, (b) P. × jrtyschensis, (c) P. laurifolia. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3596099_d1
title: MOESM4 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 4. Chromatograms for 2,3-bdh; this file contains ABI chromatograms of Sanger sequence of 2,3-bdh locus from â  2,3-bdh clone T2.1.
DOI: 10.6084/m9.figshare.c.3596099_d2
title: MOESM3 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 3. MiSeq read assembly; this file contains MiSeq sequence reads from â  2,3-bdh clone T1.2 mapped to 2,3-bdh locus using default parameters in Geneious software.
DOI: 10.6084/m9.figshare.c.3596117_d1
title: Additional file 1: of Long-term follow-up of mental health, health-related quality of life and associations with motor skills in young adults born preterm with very low birth weight

description: Share of young people living with their parents in Europe. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3596099_d4
title: MOESM2 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 2. Chromatograms for adh; this file contains ABI chromatograms of Sanger sequence of adh locus from ∆adh clone T1.1 and ∆adh clone T1.2.
DOI: 10.15468/dl.vbr4e8
title: Occurrence Download

description: A dataset containing 4376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Dendrortyx macroura (Jardine & Selby, 1828)"
 ]
}

 The dataset includes 4376 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032339-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gsud6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguilla myriaster Brevoort, 1856",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032338-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3596132_d8
title: Additional file 3: of Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA)

description: Polymorphic SVA candidate loci with relaxed SVA Read cutoff. (TXT 89Â kb)
DOI: 10.6084/m9.figshare.c.3596132_d9
title: Additional file 4: of Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA)

description: Polymorphic SVA candidate loci with stringent SVA Read cutoff. (TXT 60Â kb)
DOI: 10.6084/m9.figshare.c.3596147_d6
title: MOESM9 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 9: Table S5. Values used in decision tree analysis.Table to accompany FigureÂ 6.
DOI: 10.6084/m9.figshare.c.3596135_d6
title: Additional file 3: Table S3. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.6084/m9.figshare.c.3596156_d3
title: Additional file 3: Table S2. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals

description: Univariate association of ambient PM2.5 levels and all measured miRNAs (nâ  =â  798) in extracellular vesicles (EVs). (XLSX 289 kb)
DOI: 10.6084/m9.figshare.c.3596147_d7
title: MOESM11 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 11: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.c.3596147_d8
title: MOESM1 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 1: Table S1. Summary of RNA-seq data. Total mapped reads and mapping rates are indicated for all samples used in this study.
DOI: 10.6084/m9.figshare.c.3596147_d9
title: MOESM6 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 6: Table S4. Exon feature scores of all 2335 control exon pairs. Ensembl IDs, genomic coordinates and all information used to draw FigureÂ 5 box plots (column 1 and 2) are provided with in this table. Some SVM-BP scores are not given because SVM-BP did not find any branch point that satisfies the required conditions of a branch point.
DOI: 10.15468/dl.29gmq4
title: Occurrence Download

description: A dataset containing 19128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Diglossa baritula Wagler, 1832"
 ]
}

 The dataset includes 19128 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032340-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596135_d14
title: Additional file 6: Table S4. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.15468/dl.xa43vy
title: Occurrence Download

description: A dataset containing 726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedeomyia squamipennis (Lynch Arribálzaga, 1878)"
 ]
}

 The dataset includes 726 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032341-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596210_d3
title: Additional file 2 of Circlator: automated circularization of genome assemblies using long sequencing reads

description: An Excel spreadsheet containing Tables S1â  5 and S7. Table S1. NCTC project IDs and accession numbers for the PacBio bacterial samples Table S2. A complete breakdown of results on the PacBio bacterial samples (an expanded version of Table 1) Table S3. QUAST results on the PacBio bacterial samples Table S4. Results of testing user-defined parameters for all NCTC data sets Table S5. Results of testing user-defined parameters for the MinION data set Table S7. Run time and memory usage for all data sets (excluding those in Tables S4 and S5). (XLS 305 kb)
DOI: 10.15468/dl.c6hfaw
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Delphinus delphis Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 47 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032342-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596249_d3
title: Additional file 2: Table S2. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Primer sequences used for RT-qPCR validation. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3596231_d7
title: Additional file 7: Table S6. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Regulation of extracellular peroxidases. Listed are 29 peroxidases that are annotated to be located in the extracellular region and found to be regulated either in one of the tested lines under Pi-depletion or which were differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions. Green and red fields depict significantly induced or repressed genes, respectively (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). This table is based on the list of 322 regulated genes of the GO term “extracellular region” (see Additional file 6: Table S5). (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3596249_d4
title: Additional file 3: Table S3.1Â â   3.3. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Complete list of significantly differentially expressed transcripts in 2DPE groups, including all three contrasts (IVM:BF, BF:NBF, and IVM:NBF). (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3596231_d8
title: Additional file 4: Table S3. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Pi-responsive genes exclusively regulated in wild-type and pdr2 roots. Shown is the linear fold change of all 241 genes that showed Pi-dependent expressional changes (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5) in wild-type and pdr2 only, but not in lpr1lpr2 roots. Highlighted are genes that were differentially expressed in pdr2 (at least 2-fold higher or lower) compared to the wild-type. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3596231_d9
title: Additional file 1: Table S1. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: ATH1 dataset. Shown is the relative average expression value of all probe sets (B-G) and the linear fold change of all pairwise comparions (L-AC). (XLSX 9833 kb)
DOI: 10.6084/m9.figshare.c.3596270_d1
title: Additional file 1: of Rifaximin is an effective alternative to metronidazole for the treatment of chronic enteropathy in dogs: a randomised trial

description: Raw Data Rifaximin BMC Vet Res.xlsx (Raw Data Spreadsheet). Raw data of CIBDAI scores, remission rates at day 21, dog weights, and C-reactive protein levels. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3596249_d6
title: Additional file 4: Table S4.1Â â   4.3. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Complete list of significantly differentially expressed transcripts in 6DPE groups, including all three contrasts (IVM:BF, BF:NBF, and IVM:NBF). (XLSX 76 kb)
DOI: 10.6084/m9.figshare.c.3596231_d11
title: Additional file 5: Table S4. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Pi-responsive and deregulated genes in pdr2 or lpr1lpr2 roots and GO term analysis. Shown is a list of 1680 genes that were either regulated in one of the tested lines under Pi-depletion or differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions, compared to the wild-type (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). Additional tabs show results from Gene Ontology analysis using the list of 1680 genes. BP, biological processes; MF, molecular function; CC, cellular compartment. (XLSX 1048 kb)
DOI: 10.6084/m9.figshare.c.3596225_d9
title: Additional file 10: Table S4. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species

description: Sequences of the primers used for the qPCR experiment. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3596231_d12
title: Additional file 13: Table S11. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Protein/transcript list of spCCA analysis. Shown is the list of mRNAs/proteins that are highly relevant (high weight) within the three canonical variables found in the spCCA analysis. Values in tables illustrate the relative weight of each mRNA/protein. Negative values indicate that these mRNAs/proteins are anti-correlated to the pattern of the respective canonical variable as shown in Fig.Â 3 and Additional file 14: Figure S3. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3596231_d13
title: Additional file 9: Table S8. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Differentially regulated proteins. Listed are 1304 proteins that were either Pi-responsive in at least one genotype (Col-0, pdr2 and/or lpr1lpr2) or which were already deregulated in one of the mutant lines grown on Pi-replete conditions (p ≤ 0.05, 0.769 ≥ FC ≥ 1.3). Green and red boxes represent proteins that were significantly induced or repressed, respectively. Blue boxes represent proteins that were significantly regulated (p ≤ 0.05) but did not reach the preassigned cut-off fold change value. (XLSX 230 kb)
DOI: 10.6084/m9.figshare.c.3596225_d10
title: Additional file 1: Table S1. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species

description: Genes missing from the published annotations of D. simulans [53] and D. mauritiana [54] and from both species. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3596231_d14
title: Additional file 6: Table S5. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Regulated genes of the GO term “extracellular region”. Listed are 322 genes whose encoded proteins are annotated to be located in the extracellular region (GO: 0005576) and which were either regulated in one of the tested lines under Pi-depletion or which were differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions. This table is based on the list of 1680 genes (see Additional file 4: Table S3). (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3596249_d9
title: Additional file 7: Tables S6.1 – 6.6. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Alternative analysis for the identification of IVM-responsive DE transcripts – 2DPE. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3596339_d2
title: Additional file 7: of The Z-cad dual fluorescent sensor detects dynamic changes between the epithelial and mesenchymal cellular states

description: Supporting Data. (XLSX 51 kb)