cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8pms9cw3jt.1
title: Data for: Tropical seasonality in the late Campanian (Late Cretaceous): Comparison between multiproxy records from three bivalve taxa from Oman

description: Supplementary material for de Winter et al. "Tropical seasonality in the late Campanian (Late Cretaceous): Comparison between multiproxy records from three bivalve taxa from Oman" (Palaeogeography, Palaeoclimatology, Palaeoecology) Supplementary file 1: Detailed description of LA-ICP-MS methodology and calibration of XRF data. Supplementary file 2: Trace element results of VV shell Supplementary file 3: Trace element results of TS shell Supplementary file 4: Trace element results of OF shell Supplementary file 5: Compilation of stable isotope results Supplementary file 6: Spectral analysis routine used for data in figures 7, 8 and 9 Supplementary file 7: Spectral analysis results for VV shell Supplementary file 8: Spectral analysis results for TS shell Supplementary file 9: Spectral analysis results for OF shell
DOI: 10.5061/dryad.01s00/1
title: Picq_et_al_2017_raw_and_filtered_SNP_data

description: The file contains all of the SNP data used in our article. The files named HapMap.fas.txt, HapMap.hmc.txt and HapMap.hmp.txt were obtained with the de novo UNEAK pipeline and respectively contains sequence of the SNP tag/read, the tag/read counts of each allele of the SNPs in each individual and eventually the genotypes. These files were obtained with the following default parameter settings: minimum tag count c = 5, error tolerance rate in the network filter e = 0.03 and minimum minor allele frequency mnMAF = 0.05. The last file named LymantriaD_Picq_et_al_80%_coverage_MafHeHw_LD_20170920.vcf present the 2327 SNPs obtained after the different SNP filtering steps (see Table 2 in our article). The 133 outlier SNPs are present in this file.
DOI: 10.5061/dryad.1pk42/36
title: paller1_table

description: Paller1: Results of the varying parasite density experiment including the AICc and deltaAIC of each of the transmission functions.
DOI: 10.5061/dryad.1pk42/37
title: paller2_table

description: Paller2: Results of the varying parasite number experiment including the AICc and deltaAIC of each of the transmission functions.
DOI: 10.5061/dryad.1pk42/38
title: paras_density_table

description: Table 2d: Results of the varying parasite density experiment including the AICc and deltaAIC of each of the transmission functions.
DOI: 10.5061/dryad.1pk42/39
title: time_table

description: Table 2c: Results of the varying exposure duration experiment including the AICc and deltaAIC of each of the transmission functions.
DOI: 10.5061/dryad.1pk42/40
title: volume_table

description: Table 2a: Results of the varying parasite number (constant density) experiment including the AICc and deltaAIC of each of the transmission functions.
DOI: 10.5061/dryad.1pk42/41
title: table2

description: Model selection statistics for macroparasite transmission functional forms (table 1 in main text of manuscript) according to different experimental conditions (a-e) of Pseudacris regilla tadpole hosts and cercariae of Ribeiroia ondatrae. Functional forms with identical AICc values are mathematically equivalent under the experimental condition tested.
DOI: 10.5061/dryad.1pk42/42
title: tableSI

description: Model selection statistics for macroparasite transmission functional forms (table 1 in main text of manuscript) according to different experimental conditions (a-b) of rainbow trout Oncorhynchus mykiss hosts and cercariae of Diplostomum spathaceum (Karvonen et al. 2003) and (c-d) of minnow Zacco temmincki and cercariae of Centrocestus armatus (Paller et al.2007). Functional forms with identical AICc values are mathematically equivalent under the experimental condition tested.
DOI: 10.5061/dryad.1pk42/43
title: behavior

description: Table of parameter estimates of the host behavior (varying parasite number, with tadpoles anaesthesized experiment). Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/44
title: host_den

description: Table of parameter estimates of the host density experiment. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/45
title: karvonen1

description: Table of parameter estimates of the varying parasite density experiment from Karvonen et al. 2003. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.20407/1
title: Phenotypic data file

description: The phenotypic data analysed, including individual identities, years of measurement, morphological and fitness data.
DOI: 10.5061/dryad.20407/2
title: Pedigree file

description: The pedigree (individual identities and parents) used for quantitative genetic analyses
DOI: 10.5061/dryad.3444s/3
title: Dataset_S3
DOI: 10.5061/dryad.3444s/4
title: Dataset_S4
DOI: 10.5061/dryad.3444s/5
title: Dataset_S5
DOI: 10.5061/dryad.3444s/6
title: Dataset_S6
DOI: 10.5061/dryad.3444s/7
title: Dataset_S7
DOI: 10.5061/dryad.3444s/8
title: merged_counts

description: Raw counts matrix based on mapping with Bowtie2. Data is not normalized.
DOI: 10.5061/dryad.3444s/9
title: snps.bleaching_response

description: single nucleotide polymorphism genotype matrix for all tissue samples used in study (n=35 libraries).
DOI: 10.5061/dryad.424tb/1
title: Semisynthesis and insecticidal activity of some novel fraxinellone-based thioethers containing 1,3,4-oxadiazole moiety

description: Spectra data of compounds 4e-4k and 5e-5k.
DOI: 10.5061/dryad.4p3s0/1
title: data-biomass

description: data of table 1 and Fig.1, biomass of clone, recipient and donor in three heterogeneous environments. data format is for R analysis.
DOI: 10.5061/dryad.4p3s0/2
title: R-code

description: R code for Table 1 and Table S2
DOI: 10.5061/dryad.4p3s0/3
title: data-root leaf and clonal organ mass

description: data for Fig.S1 and Table S2
DOI: 10.5061/dryad.4pm81/1
title: Sunda_Sahul list

description: List of Australian rainforest species allocated with biogeographic origin.
DOI: 10.5061/dryad.4pm81/2
title: certainty in SundaSahul species

description: File contains a list of Sunda and Sahul species with a verdict given (i.e. how certain an ancestry was allocated). Verdict is based on the published studies relating to each species with further comments from an Australian rainforest expert.
DOI: 10.5061/dryad.6b578/1
title: Allometry 2015

description: Allometry data from 2015 season
DOI: 10.5061/dryad.6b578/2
title: Mating Success 2015

description: Mating success data from 2015 season
DOI: 10.5061/dryad.6b578/3
title: Mating Success and Allometry 2014

description: Data for allometry and mating success for 2014 season.
DOI: 10.5061/dryad.6jd34/3
title: Multilocus genotype data of Daphnia longispina complex

description: This file contains the microsatellite data from the publication formatted as input file for the program Genetix, which was used to calculate a factorial correspondence analysis that is presented in the publication.
DOI: 10.5061/dryad.74v52/1
title: Laidre et al EcolEv genetic data FINAL

description: Microsatellite data from four polar bear subpopulations in support of Laidre et al. Ecology and Evolution
DOI: 10.5061/dryad.7v475/1
title: Data Files
DOI: 10.5061/dryad.8153g/16
title: BEAST_mtDNAdataset5_equidsOnly_allPartns_rootNotConstrained_inclEovodovi
DOI: 10.5061/dryad.8153g/17
title: BEAST_mtDNAdataset5_equidsOnly_reducedPartns_rootConstrained_exclEovodovi
DOI: 10.5061/dryad.8153g/19
title: BEAST_mtDNAdataset5_equidsOnly_reducedPartns_rootNotConstrained_exclEovodovi
DOI: 10.5061/dryad.8153g/20
title: BEAST_mtDNAdataset5_equidsOnly_reducedPartns_rootNotConstrained_inclEovodovi
DOI: 10.5061/dryad.8153g/21
title: BEAST_mtDNADataset5_equidsOnly_allPartns_rootConstrained_exclEovodovi.mcc
DOI: 10.5061/dryad.8153g/22
title: BEAST_mtDNADataset5_equidsOnly_allPartns_rootConstrained_inclEovodovi.mcc
DOI: 10.5061/dryad.8153g/23
title: BEAST_mtDNADataset5_equidsOnly_allPartns_rootNotConstrained_exclEovodovi.mcc
DOI: 10.5061/dryad.8153g/24
title: BEAST_mtDNADataset5_equidsOnly_allPartns_rootNotConstrained_inclEovodovi.mcc
DOI: 10.5061/dryad.8153g/25
title: BEAST_mtDNADataset5_equidsOnly_reducedPartns_rootConstrained_exclEovodovi.mcc
DOI: 10.5061/dryad.8153g/26
title: BEAST_mtDNADataset5_equidsOnly_reducedPartns_rootConstrained_inclEovodovi.mcc
DOI: 10.5061/dryad.8153g/27
title: BEAST_mtDNADataset5_equidsOnly_reducedPartns_rootNotConstrained_exclEovodovi.mcc
DOI: 10.5061/dryad.8ks16/1
title: 1st_generation_library

description: The archive includes the raw (fastq) and filtered (fasta) sequences of the 1st generation random library described in the main text.
DOI: 10.5061/dryad.8ks16/2
title: 2nd_generation_library

description: The archive includes the raw (fastq) and filtered (fasta) sequences of the 2nd generation random library described in the main text.
DOI: 10.5061/dryad.8ks16/3
title: 3rd_generation_library

description: The archive includes the raw (fastq) and filtered (fasta) sequences of the 3rd generation random library described in the main text.
DOI: 10.5061/dryad.8mr63/1
title: Table Dryad BJLS Dufour

description: Measured hand and foot toepad traits (in mm2 table sheet 1 in Calibishie, 2 at the island scale); limb and body morphological traits (in mm, table sheet 3 in Calibishie, 2 at the island scale) and ecological traits (in cm, table sheet 5 in Calibishie, 6 at the island scale).
DOI: 10.5061/dryad.ck858/1
title: Eyeliner

description: Reflectance data of black waterproof liquid eyeliner (Collection 2000, USA) used to manipulate the horizontal facial stripe of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/2
title: Lens_Transmittance

description: Normalized transmittance of Neolamprologus brichardi crystalline lens.
DOI: 10.5061/dryad.ck858/3
title: Metriaclima_zebra_spectral_sensitivities

description: Spectral sensitivities of Metriaclima zebra opsins used to model Neolamprologus brichardi vision.
DOI: 10.5061/dryad.ck858/4
title: Mirror_Stripe_Manipulation

description: Behavioral data from standard mirror image stimulation testing stripe manipulation.
DOI: 10.5061/dryad.ck858/5
title: Normalized_Downwelling_Irradiance

description: Normalized downwelling irradiance at Lake Tanganyika, Zambia, Isanga Bay, collected at 7m depth on September 2011 (8:30am).
DOI: 10.5061/dryad.ck858/6
title: Reflectance_Blue

description: Reflectance data of the facial blue patch of Neolamprologus brichardi.
DOI: 10.5061/dryad.d7t8c/1
title: all data

description: Complete dataset
DOI: 10.5061/dryad.fq1sj/1
title: Tekwa et al 2017 PRSB readme

description: File description and instruction for running experimental and simulation codes
DOI: 10.5061/dryad.fq1sj/4
title: Simulation

description: Matlab code and data for simulations of cooperators versus defectors
DOI: 10.5061/dryad.fq1sj/5
title: ImarisData_experiment

description: Matlab code and data for microhabitat experiment, with bacteria locations acquired using Imaris fluorescent analyses
DOI: 10.5061/dryad.fq1sj/7
title: ImarisImages_experiment

description: Experimental flourescent images (downsized), acquired using Zeiss confocal microscope, and cell positions and counts processed using Imaris
DOI: 10.5061/dryad.fq1sj/8
title: ImarisImages_calibration

description: Calibration flourescent images (downsized), acquired using Zeiss confocal microscope, and cell positions and counts processed using Imaris
DOI: 10.5061/dryad.hr718/11
title: TIFF stacks

description: This is a folder containing two subfolders holding TIFF stacks: 'ZJ_RomundinaDG' and 'ZJ_RomundinaDG_01'
DOI: 10.5061/dryad.hr718/13
title: CPW9 part + counterpart

description: Movie from CT-scans of part and counterpart of CPW9
DOI: 10.5061/dryad.j3073/3
title: G3_Galapagos

description: Data on native resident Galápagos terrestrial birds, G3 format, richness + island age + colonisation times + branching times
DOI: 10.5061/dryad.j3073/4
title: G1_sims_4Myr

description: Simulations, G1 format, 3000 replicates, 4 million years
DOI: 10.5061/dryad.j3073/5
title: G1_sims_10Myr

description: Simulations, G1 format, 3000 replicates, 10 million years
DOI: 10.15156/bio/sh3582174.08fu
title: SH3582174.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582175.08fu
title: SH3582175.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582176.08fu
title: SH3582176.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582177.08fu
title: SH3582177.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582178.08fu
title: SH3582178.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582179.08fu
title: SH3582179.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582180.08fu
title: SH3582180.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582181.08fu
title: SH3582181.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582182.08fu
title: SH3582182.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3582183.08fu
title: SH3582183.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.