cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13685165
title: Evolution of venom production in marine predatory snails

description: This repository contains the following datasets:



annotations.zip: includes two files per species. The "species_code_annot.tsv" file (e.g., CI_annot.tsv) includes the blast hits to Uniprot/SwissProt (_sp), gastropod genomes (_gastr), Cdd (_cdd), Pfam (_pfam), ToxProt (_tox), and Conoserver (_cono); the output of SignalP and of ConoPrec. The "species_code_topGO.tsv" file (e.g., CI_topGO.tsv) corresponds the GO annotations in a format compatible with TopGO.

assemblies.zip: includes the nucleotide coding sequences as "species_code_cds.fasta" (e.g., CI_cds.fasta) and the predicted amino acid sequences as "species_code.faa" (e.g., CI.faa) in fasta format.

expression_matrices.zip: includes the final, quality-filtered expression matrices in TPM for each species separately as "species_code_tpm.tsv" (e.g., CI_tpm.tsv). The multi-species expression matrices based on the random-selection method ("multispecies_tpm_random.tsv") and mean method ("multispecies_tpm_mean.tsv") are provided.

tissue_specific_gene_sets.zip: includes the list of tissue-specific genes for each species as "species_code_fc2_tb.tsv" (e.g., CI_fc2_tb.tsv). The column "tissue1" corresponds to the tissue with the highest TPM value ("tpm1"), therefore the tissue to which that gene is specific, while "tissue2" correspond to the tissue with the second-highest TPM values ("tpm2"). "FC" is the fold-change.

orthologer_output: includes the orthogroup assigment as outputted by the software OrthoLoger. Specifically, "path2proteome_orthogroups.txt" corresponds to the orthogroup assignment for all genes assigned to an orthogroup, while "path2proteome_stats.txt" list some statistic parameters (e.g., size of the orthogroups etc.).

CAGEE_output: includes the output from the software CAGEE as reported in the manual (https://github.com/hahnlab/CAGEE/blob/main/docs/manual/cagee_manual.md#Installation). The results for both, a gene expression matrix based on the random-selection method and the mean-based method are reported in separate folders. Within each folder are reported the results for the gland, salivary glands, and oesophagus separately. Additionally, the ultrametric species tree and the sigma tree, both in in Newick format, are provided.
DOI: 10.15468/dl.sh8bbu
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monophyllus plethodon Miller, 1900"
 ]
}

 The dataset includes 474 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008251-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcuy8g
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pristimantis phalarus (Lynch, 1998))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008252-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbxfqs
title: Occurrence Download

description: A dataset containing 1466530 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melastomataceae"
 ]
}

 The dataset includes 1466530 records from 1581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008154-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.af7b77
title: Occurrence Download

description: A dataset containing 7631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((-76.15293 24.61986,-75.30168 23.67708,-74.45213 24.17117,-74.94306 25.15598,-76.15293 24.61986))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 7631 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009671-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q48b6m
title: Occurrence Download

description: A dataset containing 175232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia triacanthos L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 175232 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003562-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usmgg6
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.06085 4.26819,-75.74799 4.26819,-75.74799 5.61401,-77.06085 5.61401,-77.06085 4.26819))",
 "HasCoordinate is true",
 "TaxonKey is Pristimantis ptochus (Lynch, 1998)"
 ]
}

 The dataset includes 59 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031929-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sj9mv
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Abies pinsapo Boiss."
 ]
}

 The dataset includes 404 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016842-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53agy4
title: Occurrence Download

description: A dataset containing 1344 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phytophthora palmivora (E.J.Butler) E.J.Butler"
 ]
}

 The dataset includes 1344 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030502-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d55n4
title: Occurrence Download

description: A dataset containing 27544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded"
 ]
 },
 "TaxonKey is Deparia Hook. & Grev."
 ]
}

 The dataset includes 27544 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0411159-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5raik
title: Occurrence Download

description: A dataset containing 346220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corylus avellana L.",
 "HasGeospatialIssue is FALSE",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 346220 records from 689 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002519-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtndg7
title: Occurrence Download

description: A dataset containing 1670 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"ESP.14_1","matchCase":false},{"type":"in","key":"TAXON_KEY","values":["165792998","1767638","1763119","4532806","4533819","1770973","1770695","1771121","1785072","1765644","8828328","5112423","1792314","8244452","4525819","4525818","1794352","165784732","4534275","1765058","4532286","1780881","1825134","4524944","9803522","4533157","1990556","1990558","1795165","5109563","9026996","4532208","1984078","1983369","165669517","165669497","1983062","1983820","1983083","1983586","165668604","1773441","1773230","5149866","1787848","1787739","1789092","4523946","4532361","5147411","5147268","5147374","5147271","8956908","9192688","5146838","5147110","11816513","5146643","5146534","4525084","4525109","5111454","5111300","1988017","1788445","4523499","4523500","4533334","4533337","4533339","8839793","1789699","4532816","4532813","5148264","1784410","1769354","1769353","1780975","1791656","1786138","10711102","1771539","8719105","6116899","5112321","4532894","1776597","1861510","1763072","1861644","1771214","1771245","1771040","1770821","4534166","1980525","1967324","1792418","5108660","1796451","4532549","4534245","4534250","1785181","1785185","1784349","4524223","5109646","5149664","1862401","1785887","1803060","5117030","1956897","4532266","4532203","4532206","1982636","4534796","1775829","1992066","8108800","4534681","4534686","1862293","1862719","1862765","4532352","1798802","6118530","5772222","1775329","1864652","5772169","5772206","7507369","1789695","1788553","4532453","10753591","4523519","193537166","1790651","5113036","8726980","5145842","5144900","157948872","8352161","5109931","4525777","1765751","1795068","1786360","1803163"],"matchCase":false},{"type":"not","predicate":{"type":"in","key":"ISSUE","values":["TAXON_MATCH_FUZZY","TAXON_MATCH_AGGREGATE","BASIS_OF_RECORD_INVALID","RECORDED_DATE_INVALID","RECORDED_DATE_MISMATCH","RECORDED_DATE_UNLIKELY","REFERENCES_URI_INVALID"],"matchCase":false}},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["HUMAN_OBSERVATION","MACHINE_OBSERVATION"],"matchCase":false},{"type":"or","predicates":[{"type":"and","predicates":[{"type":"equals","key":"MONTH","value":"1,7","matchCase":false},{"type":"equals","key":"YEAR","value":"2023","matchCase":false}]},{"type":"equals","key":"YEAR","value":"2000,2022","matchCase":false}]}]}

 The dataset includes 1670 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146007-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gntgq6
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "GadmGid is NOR.8_1",
 "InstitutionCode is trh",
 "TaxonKey is Sphagnum viride Flatberg"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006808-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jxkss
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "HasCoordinate is true",
 "TaxonKey is Triatoma dimidiata (Latreille, 1811)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 528 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039415-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5p6ew
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "Geometry POLYGON((25.34618 47.28629,25.71357 47.28629,25.71357 47.57624,25.34618 47.57624,25.34618 47.28629))",
 "HasCoordinate is true",
 "TaxonKey is Parnassius apollo (Linnaeus, 1758)"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036957-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqkmz7
title: Occurrence Download

description: A dataset containing 848568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Alliaria Heist. ex Fabr., Allamanda L., Alisma L., Alhagi Tourn. ex Gagnebin, Aleurites J.R.Forst. & G.Forst., Alcea L., Akebia Decne.)"
 ]
}

 The dataset includes 848568 records from 2259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002010-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfsuhg
title: Occurrence Download

description: A dataset containing 30882 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Norway",
 "Year 2009-2019",
 "TaxonKey is Cuculus canorus Linnaeus, 1758"
 ]
}

 The dataset includes 30882 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013695-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9a2mr
title: Occurrence Download

description: A dataset containing 550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is one of (Occidozyga lingnanica Lyu & Wang, 2022, Buergeria oxycephala (Boulenger, 1900), Liuixalus ocellatus (Liu & Hu, 1973), Liuixalus romeri (Smith, 1953), Liuixalus hainanus (Liu & Wu, 2004))"
 ]
}

 The dataset includes 550 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164670-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8kpfk
title: Occurrence Download

description: A dataset containing 41418 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Albania",
 "Country is Algeria",
 "Country is Andorra",
 "Country is Austria",
 "Country is Belarus",
 "Country is Belgium",
 "Country is Bosnia and Herzegovina",
 "Country is Bulgaria",
 "Country is Croatia",
 "Country is Czechia",
 "Country is Estonia",
 "Country is France",
 "Country is Germany",
 "Country is Greece",
 "Country is Hungary",
 "Country is Ireland",
 "Country is Italy",
 "Country is Latvia",
 "Country is Liechtenstein",
 "Country is Lithuania",
 "Country is Luxembourg",
 "Country is North Macedonia",
 "Country is Malta",
 "Country is Moldova, Republic of",
 "Country is Montenegro",
 "Country is Morocco",
 "Country is Netherlands",
 "Country is Poland",
 "Country is Portugal",
 "Country is Romania",
 "Country is Russian Federation",
 "Country is Serbia",
 "Country is Slovakia",
 "Country is Slovenia",
 "Country is Spain",
 "Country is Switzerland",
 "Country is Ukraine",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
 },
 "TaxonKey is Salix purpurea L."
 ]
}

 The dataset includes 41418 records from 273 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003309-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keghy0
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Buprestis splendens Fabricius, 1775"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003310-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdmd4e
title: Occurrence Download

description: A dataset containing 16689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-96.38306 16.48876,-95.44647 16.61514,-95.52887 17.37161,-96.45172 17.26148,-96.38306 16.48876))",
 "HasGeospatialIssue is false",
 "PublishingCountry is Mexico"
 ]
}

 The dataset includes 16689 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0336533-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkpy8x
title: Occurrence Download

description: A dataset containing 31193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum lycopersicum L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 31193 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029212-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gipfos
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis weberbaueri Pilg."
 ]
}

 The dataset includes 180 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001861-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbr5zx
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyanolyca nanus (Du Bus de Gisignies, 1847)"
 ]
}

 The dataset includes 291 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003310-150422101436696/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6q8kr
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma multiflorum L.Bolus"
 ]
}

 The dataset includes 52 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164675-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynfynx
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vriesea incurvata Gaudich."
 ]
}

 The dataset includes 498 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003310-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvpt9c
title: Occurrence Download

description: A dataset containing 169748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pavo cristatus Linnaeus, 1758"
 ]
}

 The dataset includes 169748 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049609-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92x9f5
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Accipiter bicolor bicolor"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029190-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sup81b
title: Occurrence Download

description: A dataset containing 9879 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bibliographic records of Angola mammals"
 ]
}

 The dataset includes 9879 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003310-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sya3dz
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Snowdenia C.E.Hubb."
 ]
}

 The dataset includes 264 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001863-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8g4cru
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scleromitrion gibsonii (Halford) K.L.Gibbons"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194918-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdpbdb
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma neethlingiae (L.Bolus) Schwantes"
 ]
}

 The dataset includes 69 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164680-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjz3sf
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "TaxonKey is Monarcha frater P.L.Sclater, 1874"
 ]
}

 The dataset includes 349 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078098-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iuu3gz
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilocarpus racemosus Vahl",
 "Country is Costa Rica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003310-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.