cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12376826.v6
title: Re-deposit: Place Names in West Central District of Tainan [Figshare]

description: Reused dataset from https://data.depositar.io/dataset/place-names-in-west-central-district-of-tainanPlace Names on Ancient Maps of West Central District of Tainan, Taiwan來源研究計畫：空間資訊科學與跨領域研究─台江內海地區的人文社會經濟發展與環境變遷-用以處理台江內海地區時空資訊之協同研究平台的探索與建立 (http://gis.rchss.sinica.edu.tw/taijiang/子計畫四)<br>English Translation for Place Name and Type via Google TranslationSpatial Fields: Spatial {"type":"Polygon","coordinates":[[[120.1750659942627,22.97656943289965],[120.1750659942627,23.003117971541474],[120.22227287292482,23.003117971541474],[120.22227287292482,22.97656943289965],[120.1750659942627,22.97656943289965]]]}Temporal Information (Time Period of Dataset): Start Time 1875-01-01 End Time 1924-01-01 <br>
DOI: 10.6084/m9.figshare.12375632
title: Additional file 4 of ARTDeco: automatic readthrough transcription detection

description: Additional file 4. Supplementary Table 3: List of IAV-associated eQTLs mapped to primary induction and read-in genes.
DOI: 10.6084/m9.figshare.12375632.v1
title: Additional file 4 of ARTDeco: automatic readthrough transcription detection

description: Additional file 4. Supplementary Table 3: List of IAV-associated eQTLs mapped to primary induction and read-in genes.
DOI: 10.6084/m9.figshare.12375626
title: Additional file 3 of ARTDeco: automatic readthrough transcription detection

description: Additional file 3. Supplementary Table 2: DoGs discovered by ARTDeco for IAV-, ΔNS1-, and mock- infected macrophages. Genomic coordinates are relative to the hg38 version of the human genome.
DOI: 10.6084/m9.figshare.12375617
title: Additional file 2 of ARTDeco: automatic readthrough transcription detection

description: Additional file 2. Supplementary Table 1: List of primary induction and read-in genes identified in IAV-infected macrophages.
DOI: 10.6084/m9.figshare.12375626.v1
title: Additional file 3 of ARTDeco: automatic readthrough transcription detection

description: Additional file 3. Supplementary Table 2: DoGs discovered by ARTDeco for IAV-, ΔNS1-, and mock- infected macrophages. Genomic coordinates are relative to the hg38 version of the human genome.
DOI: 10.6084/m9.figshare.12375617.v1
title: Additional file 2 of ARTDeco: automatic readthrough transcription detection

description: Additional file 2. Supplementary Table 1: List of primary induction and read-in genes identified in IAV-infected macrophages.
DOI: 10.6084/m9.figshare.12375560
title: Additional file 1 of Discovery of significant porcine SNPs for swine breed identification by a hybrid of information gain, genetic algorithm, and frequency feature selection technique

description: Additional file 1 The selected PCSNPs from 10 randomly-seeded data sets. There are 341 selected PCSNPs by IG+modified GA+FFS from 10 randomly-seeded data sets.
DOI: 10.6084/m9.figshare.12375560.v1
title: Additional file 1 of Discovery of significant porcine SNPs for swine breed identification by a hybrid of information gain, genetic algorithm, and frequency feature selection technique

description: Additional file 1 The selected PCSNPs from 10 randomly-seeded data sets. There are 341 selected PCSNPs by IG+modified GA+FFS from 10 randomly-seeded data sets.
DOI: 10.6084/m9.figshare.12375500
title: Additional file 1 of Effect of a low glycaemic index diet during pregnancy on maternal and cord blood metabolomic profiles: results from the ROLO randomized controlled trial

description: Results of the generalized additive models. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.12375500.v1
title: Additional file 1 of Effect of a low glycaemic index diet during pregnancy on maternal and cord blood metabolomic profiles: results from the ROLO randomized controlled trial

description: Results of the generalized additive models. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.12375458
title: Additional file 10 of Towards the restoration of the Mesoamerican Biological Corridor for large mammals in Panama: comparing multi-species occupancy to movement models

description: Additional file 10. Results - Estimates of the best supported SSF model for each individual.
DOI: 10.6084/m9.figshare.12375458.v1
title: Additional file 10 of Towards the restoration of the Mesoamerican Biological Corridor for large mammals in Panama: comparing multi-species occupancy to movement models

description: Additional file 10. Results - Estimates of the best supported SSF model for each individual.
DOI: 10.6084/m9.figshare.12375413
title: Additional file 9 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 9: Document S3. Scalable Vector Graphics (SVG) figure demonstration files for the 17 assigned clusters of 142 prophages.
DOI: 10.6084/m9.figshare.12375407
title: Additional file 8 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 8: Document S2. NCBI files of 142 prophages used for Phamerator database creation.
DOI: 10.6084/m9.figshare.12375413.v1
title: Additional file 9 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 9: Document S3. Scalable Vector Graphics (SVG) figure demonstration files for the 17 assigned clusters of 142 prophages.
DOI: 10.6084/m9.figshare.12375404
title: Additional file 7 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 7: Document S1. Multi-fasta files for the 142 Salmonella prophage sequences.
DOI: 10.6084/m9.figshare.12375407.v1
title: Additional file 8 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 8: Document S2. NCBI files of 142 prophages used for Phamerator database creation.
DOI: 10.6084/m9.figshare.12375392
title: Additional file 5 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 5: Table S4. All the assigned Pham numbers and its color code.
DOI: 10.6084/m9.figshare.12375398
title: Additional file 6 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 6: Table S5. The distribution of conserved Phamily members among clusters of Salmonella bacteriophages.
DOI: 10.6084/m9.figshare.12375398.v1
title: Additional file 6 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 6: Table S5. The distribution of conserved Phamily members among clusters of Salmonella bacteriophages.
DOI: 10.6084/m9.figshare.12375404.v1
title: Additional file 7 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 7: Document S1. Multi-fasta files for the 142 Salmonella prophage sequences.
DOI: 10.6084/m9.figshare.12375392.v1
title: Additional file 5 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 5: Table S4. All the assigned Pham numbers and its color code.
DOI: 10.6084/m9.figshare.12375380
title: Additional file 3 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 3: Table S2. Nucleotide similarities between pairs of Salmonella prophage genomes (n = 142).
DOI: 10.6084/m9.figshare.12375377
title: Additional file 2 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 2: Table S1. Detailed profiles of 142 prophages present in Salmonella enterica.
DOI: 10.6084/m9.figshare.12375386
title: Additional file 4 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 4: Table S3. Nucleotide identify matrix for 17 clusters of Cluster A-Q.
DOI: 10.6084/m9.figshare.12375377.v1
title: Additional file 2 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 2: Table S1. Detailed profiles of 142 prophages present in Salmonella enterica.
DOI: 10.6084/m9.figshare.12375380.v1
title: Additional file 3 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 3: Table S2. Nucleotide similarities between pairs of Salmonella prophage genomes (n = 142).
DOI: 10.6084/m9.figshare.12375386.v1
title: Additional file 4 of Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica

description: Additional file 4: Table S3. Nucleotide identify matrix for 17 clusters of Cluster A-Q.
DOI: 10.6084/m9.figshare.12375350
title: Additional file 6 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 6. Overlapping results of contrast (i) and proteins involved in human sperm motility. Comparison of our results with the study of Amaral et al. [19] showed that 57 out of the differentially expressed genes in contrast (i) were the same as their differentially expressed proteins.
DOI: 10.6084/m9.figshare.12375338
title: Additional file 4 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 4 Variant case-control analysis. Chromosome, position, number of homozygous, heterozygous and total variants in cases and controls, Fisher exact test p-value for the case control allelic model according to SnpSift (CC_ALL, see Methods), and contrast for significance (Table X1). Consequence, impact, gene id, ensembl gene id, existing variation and SIFT scores are included in Table X2.
DOI: 10.6084/m9.figshare.12375341
title: Additional file 5 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 5. Variants occuring in differentially expressed genes. Variants in genes identified for hyperactivity at Day 0 in Landrace (contrast (i), Table X1), change in levels of hyperactivity between day 0 and 96 h storage in Landrace (contrast (iii), Table X2), and genes in common for contrasts (i) and (iii) (Table X3). The SNPs are presented with Ensembl gene id, gene name, significance level of differentially expressed gene (FDR), chromosome (SSC) and position, effect, impact, existing ID and SIFT score.
DOI: 10.6084/m9.figshare.12375350.v1
title: Additional file 6 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 6. Overlapping results of contrast (i) and proteins involved in human sperm motility. Comparison of our results with the study of Amaral et al. [19] showed that 57 out of the differentially expressed genes in contrast (i) were the same as their differentially expressed proteins.
DOI: 10.6084/m9.figshare.12375338.v1
title: Additional file 4 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 4 Variant case-control analysis. Chromosome, position, number of homozygous, heterozygous and total variants in cases and controls, Fisher exact test p-value for the case control allelic model according to SnpSift (CC_ALL, see Methods), and contrast for significance (Table X1). Consequence, impact, gene id, ensembl gene id, existing variation and SIFT scores are included in Table X2.
DOI: 10.6084/m9.figshare.12375341.v1
title: Additional file 5 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 5. Variants occuring in differentially expressed genes. Variants in genes identified for hyperactivity at Day 0 in Landrace (contrast (i), Table X1), change in levels of hyperactivity between day 0 and 96 h storage in Landrace (contrast (iii), Table X2), and genes in common for contrasts (i) and (iii) (Table X3). The SNPs are presented with Ensembl gene id, gene name, significance level of differentially expressed gene (FDR), chromosome (SSC) and position, effect, impact, existing ID and SIFT score.
DOI: 10.6084/m9.figshare.12375323
title: Additional file 2 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 2. Differentially expressed genes for change in levels of hyperactivity between day 0 and 96 h storage in Landrace. The results are presented with Ensembl gene id, gene symbol, gene name, fold change and significance level (FDR).
DOI: 10.6084/m9.figshare.12375326
title: Additional file 3 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 3. Variants identified in the Landrace animals of contrasts (i) and (iii). The variants are presented per chromosome with Ensembl VEP information.
DOI: 10.6084/m9.figshare.12375317
title: Additional file 1 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 1. Differentially expressed genes for hyperactivity at ejaculation (day 0) in Landrace. The results are presented with Ensembl gene id, gene symbol, gene name, fold change and significance level (FDR).
DOI: 10.6084/m9.figshare.12375323.v1
title: Additional file 2 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 2. Differentially expressed genes for change in levels of hyperactivity between day 0 and 96 h storage in Landrace. The results are presented with Ensembl gene id, gene symbol, gene name, fold change and significance level (FDR).
DOI: 10.6084/m9.figshare.12375326.v1
title: Additional file 3 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 3. Variants identified in the Landrace animals of contrasts (i) and (iii). The variants are presented per chromosome with Ensembl VEP information.
DOI: 10.6084/m9.figshare.12375317.v1
title: Additional file 1 of Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility

description: Additional file 1. Differentially expressed genes for hyperactivity at ejaculation (day 0) in Landrace. The results are presented with Ensembl gene id, gene symbol, gene name, fold change and significance level (FDR).
DOI: 10.6084/m9.figshare.12375290
title: gene accession number

description: gene accession number
DOI: 10.6084/m9.figshare.12375293
title: Master Averaged.csv

description: Averaged Data set used for ANOVAs
DOI: 10.6084/m9.figshare.12375296
title: Master Not Averaged.csv

description: Non-averaged data used for analysis
DOI: 10.6084/m9.figshare.12375290.v1
title: gene accession number

description: gene accession number
DOI: 10.6084/m9.figshare.12375203
title: NMR data.zip

description: Dataset supporting <i>Barekatain Y et al. </i>Communication Biology. Article titled: Robust detection of oncometabolic aberrations by <sup>1</sup>H-<sup>13</sup>C heteronuclear single quantum correlation in intact biological specimens.<b></b>These NMR data can be analyzed using NMR softwares such as TopSpin which can be downloaded for free from Bruker website.
DOI: 10.6084/m9.figshare.12375296.v2
title: Master Not Averaged.csv

description: Non-averaged data used for analysis
DOI: 10.6084/m9.figshare.12375296.v1
title: Master Not Averaged.csv

description: Non-averaged data used for analysis
DOI: 10.6084/m9.figshare.12375158
title: OpenML-Train

description: Collection created to train the augmentation learning classifier of IDA.<br>
DOI: 10.6084/m9.figshare.12375185
title: OpenML-Test

description: Collection of data augmentation examples used to assess the quality of IDA.<br>
DOI: 10.6084/m9.figshare.12375158.v1
title: OpenML-Train

description: Collection created to train the augmentation learning classifier of IDA.<br>
DOI: 10.6084/m9.figshare.12375185.v1
title: OpenML-Test

description: Collection of data augmentation examples used to assess the quality of IDA.<br>
DOI: 10.6084/m9.figshare.12374978
title: Effects of predation from functionally diverse predators on adult production and traits

description: Four days prior to the beginning of the experiment, 500ml plastic containers were filled with 400ml recerse osmosis water, 1 g dried oak (<i>Quercus virginiana</i>) leaves, and 0.05g dried decorated crickets (Gryllodes sigillatus), and 100 µl microbial inoculum from rain-filled buckets. Containers were covered with plastic lids with holes punched for ventilation. Cohorts of 150 newly hatched Aedes aegypti were placed in each container and exposed to one of five predator treatments: no predator, Mesocyclops longisetus, Corethrella appendiculata, Anopheles barberi, and diverse. Single predator species treatments received 3 individual predators of the same species, and the diverse treatments received one of each species. All predators used were late instars. Predators were removed on day 6. 0.5g dried oak leaves and 0.025g dried decorated crickets were added on days 16 and 30 to replenish food resources for <i>A. aegypti. </i>Containers were checked daily for <i>A. aegypti </i>pupae which were placed in glass vials and the number of days from hatching to pupation recorded (Daystop in data). Pupae were checked daily for adults, which were removed and the sex and the number of days to adulthood (Daystoa in data file) recorded. Female adults were placed in a drying oven at 70C for &gt;48 hours, after which their wing lengths were measured.
DOI: 10.6084/m9.figshare.12374984
title: <i>Heteropia glomerosa</i> (Bowerbank, 1873) (Porifera, Calcarea, Calcaronea), a new alien species in the Atlantic

description: Marine bioinvasions are potential threats to biodiversity and ecosystems services, being one of the major environmental, human health and socio-economic problems throughout the world. In 2005, a sponge species never reported before to the Atlantic Ocean was detected in Rio de Janeiro (Brazil). This species was initially considered new to science and in less than a decade its populations became very abundant and widespread in the Brazilian coast. In the present work, we performed detailed morphological and molecular analyses of this supposedly new species and found out that it is in fact the Indo-Pacific calcareous sponge <i>Heteropia glomerosa</i> (Bowerbank, 1873). <i>Heteropia glomerosa</i> is the third alien species of calcareous sponge reported in the Atlantic and the second one that allegedly came from the Indo-Pacific. To confirm the taxonomic identification of the Atlantic specimens, we used morphological and molecular tools and re-described the holotypes of <i>H. glomerosa</i> and <i>Uteopsis argentea</i> (Poléjaeff, 1883). We discuss the possibility that biofouling is the introduction source for sponges and present the known distribution of <i>H. glomerosa</i>. Moreover, we verified that <i>H. glomerosa</i> fits seven out of 10 criteria proposed for recognizing alien species. Although this species can be recognized as introduced in the Atlantic Ocean, studies on population genetics, phylogeography, reproduction strategies, larval behaviour, and ecology will be necessary to allow a better evaluation of its invasive potential.
DOI: 10.6084/m9.figshare.12374984.v1
title: <i>Heteropia glomerosa</i> (Bowerbank, 1873) (Porifera, Calcarea, Calcaronea), a new alien species in the Atlantic

description: Marine bioinvasions are potential threats to biodiversity and ecosystems services, being one of the major environmental, human health and socio-economic problems throughout the world. In 2005, a sponge species never reported before to the Atlantic Ocean was detected in Rio de Janeiro (Brazil). This species was initially considered new to science and in less than a decade its populations became very abundant and widespread in the Brazilian coast. In the present work, we performed detailed morphological and molecular analyses of this supposedly new species and found out that it is in fact the Indo-Pacific calcareous sponge <i>Heteropia glomerosa</i> (Bowerbank, 1873). <i>Heteropia glomerosa</i> is the third alien species of calcareous sponge reported in the Atlantic and the second one that allegedly came from the Indo-Pacific. To confirm the taxonomic identification of the Atlantic specimens, we used morphological and molecular tools and re-described the holotypes of <i>H. glomerosa</i> and <i>Uteopsis argentea</i> (Poléjaeff, 1883). We discuss the possibility that biofouling is the introduction source for sponges and present the known distribution of <i>H. glomerosa</i>. Moreover, we verified that <i>H. glomerosa</i> fits seven out of 10 criteria proposed for recognizing alien species. Although this species can be recognized as introduced in the Atlantic Ocean, studies on population genetics, phylogeography, reproduction strategies, larval behaviour, and ecology will be necessary to allow a better evaluation of its invasive potential.
DOI: 10.6084/m9.figshare.12374978.v1
title: Positive_Mortality_Effects_Predation_Data.xlsx

description: Four days prior to the beginning of the experiment, 500ml plastic containers were filled with 400ml recerse osmosis water, 1 g dried oak (<i>Quercus virginiana</i>) leaves, and 0.05g dried decorated crickets (Gryllodes sigillatus), and 100 µl microbial inoculum from rain-filled buckets. Containers were covered with plastic lids with holes punched for ventilation. Cohorts of 150 newly hatched Aedes aegypti were placed in each container and exposed to one of five predator treatments: no predator, Mesocyclops longisetus, Corethrella appendiculata, Anopheles barberi, and diverse. Single predator species treatments received 3 individual predators of the same species, and the diverse treatments received one of each species. All predators used were late instars. Predators were removed on day 6. 0.5g dried oak leaves and 0.025g dried decorated crickets were added on days 16 and 30 to replenish food resources for <i>A. aegypti. </i>Containers were checked daily for <i>A. aegypti </i>pupae which were placed in glass vials and the number of days from hatching to pupation recorded (Daystop in data). Pupae were checked daily for adults, which were removed and the sex and the number of days to adulthood (Daystoa in data file) recorded. Female adults were placed in a drying oven at 70C for &gt;48 hours, after which their wing lengths were measured.
DOI: 10.6084/m9.figshare.12374978.v3
title: Effects of predation from functionally diverse predators on adult production and traits

description: Four days prior to the beginning of the experiment, 500ml plastic containers were filled with 400ml recerse osmosis water, 1 g dried oak (<i>Quercus virginiana</i>) leaves, and 0.05g dried decorated crickets (Gryllodes sigillatus), and 100 µl microbial inoculum from rain-filled buckets. Containers were covered with plastic lids with holes punched for ventilation. Cohorts of 150 newly hatched Aedes aegypti were placed in each container and exposed to one of five predator treatments: no predator, Mesocyclops longisetus, Corethrella appendiculata, Anopheles barberi, and diverse. Single predator species treatments received 3 individual predators of the same species, and the diverse treatments received one of each species. All predators used were late instars. Predators were removed on day 6. 0.5g dried oak leaves and 0.025g dried decorated crickets were added on days 16 and 30 to replenish food resources for <i>A. aegypti. </i>Containers were checked daily for <i>A. aegypti </i>pupae which were placed in glass vials and the number of days from hatching to pupation recorded (Daystop in data). Pupae were checked daily for adults, which were removed and the sex and the number of days to adulthood (Daystoa in data file) recorded. Female adults were placed in a drying oven at 70C for &gt;48 hours, after which their wing lengths were measured.