cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7104401
title: An analogue based forecasting system for Mediterranean marine litter concentration - Code and simulations dataset

description: This dataset contains the files and codes required to perform the computations described in "An analogue based forecasting system for Mediterranean marine litter concentration" by Gabriel Jordà and Javier Soto-Navarro, to be published in Ocean Science 2022 <strong>Summary</strong> This dataset comprises the files and code necessary to implement a statistical forecasting system for marine litter (ML) concentration in the Mediterranean Sea based on the analogues method. The system uses a historical database of ML concentration simulated by a high resolution realistic model and is trained to identify meteorological situations in the past that are similar to the forecasted ones. Then, the corresponding ML concentrations of the past analog days are used to construct the ML concentration forecast. Due to the scarcity of observations, the forecasting system has been validated against a synthetic reality (i.e. the outputs from a ML modelling system). Different approaches can be tested to refine the system. The analysis of the results show that using integral definitions for the similarity function, based on the history of the meteorological situation, improves the system performance. The system accuracy depends on the region of application being better for larger regions. The method performs well to capture the spatial patterns but performs worse to capture the temporal variability, specially the extreme values. Despite the inherent limitations of using a synthetic reality to validate the system. <strong>Dataset</strong> The dataset is developed in Matlab format, and is comprised by: Matlab files with ML concentration maps derived from the dispersion simulations performed by Soto-Navarro et al. (2020). See the reference for a detailed description of the model and simulations. Matlab files with atmospheric fields from ERA5 dataset (sea level pressure (SLP) and wind speed (U<sub>10</sub>, V<sub>10. </sub>https://climate.copernicus.eu/climate-reanalysis). Matlab files with the grid information for the different regions and sub-regions of the Mediterranean Sea analyzed. Matlab scripts needed for the implementation and running of the analogs based model. A document describing the implementation procedure. <strong>References</strong> Soto-Navarro, J., Jordà, G., Deudero, S., Alomar, C., Amores, Á., and Compa, M.: 3D hotspots of marine litter in the Mediterranean: A modeling study, Mar. Pollut. Bull., 155, 111159, https://doi.org/10.1016/j.marpolbul.2020.111159, 2020.
description: {"references": ["Soto-Navarro, J., Jord\u00e0, G., Deudero, S., Alomar, C., Amores, \u00c1., and Compa, M.: 3D hotspots of marine litter in the Mediterranean: A modeling study, Mar. Pollut. Bull., 155, 111159, https://doi.org/10.1016/j.marpolbul.2020.111159, 2020."]}
DOI: 10.6084/m9.figshare.21213584
title: Agarose Gel

description: These data belonged to AG Röszer, University of Ulm, Germany. They serve as backup and records. <br>
DOI: 10.6084/m9.figshare.21213584.v1
title: Agarose Gel

description: These data belonged to AG Röszer, University of Ulm, Germany. They serve as backup and records. <br>
DOI: 10.5281/zenodo.7113924
title: Schistosoma mansoni ATAC-seq results for IGV (female and male worms with and without LSD1 inhibitor)

description: In this study, the anti-schistosomal activity of 39 <em>Homo sapiens</em> Lysine Specific Demethylase 1 (HsLSD1) inhibitors was investigated on parasitic life cycle stages associated with both definitive and intermediate host infection. Amongst this collection of small molecules, compound <strong>33</strong> was the most potent and reduced <em>ex vivo</em> viabilities of schistosomula, juveniles, miracidia and adults. At its sub-lethal concentration to adults (3.13 µM), compound <strong>33 </strong>also significantly impacted oviposition, ovarian as well as vitellarian architecture and gonadal/neoblast stem cell proliferation. ATAC-seq analysis of adults demonstrated that compound <strong>33</strong> significantly affected chromatin structure (intragenic regions &gt; intergenic regions), especially in genes differentially expressed in cell populations (e.g., germinal stem cells, hes2<em><sup>+</sup></em>stem cell progeny, S1 cells and late female germinal cells) linked to these <em>ex vivo</em> phenotypes. The data presented here allow for visualisation in IGV https://igv.org/app/ Produced in collaboration with IHPE.
DOI: 10.5281/zenodo.7113923
title: Schistosoma mansoni ATAC-seq results for IGV (female and male worms with and without LSD1 inhibitor)

description: In this study, the anti-schistosomal activity of 39 <em>Homo sapiens</em> Lysine Specific Demethylase 1 (HsLSD1) inhibitors was investigated on parasitic life cycle stages associated with both definitive and intermediate host infection. Amongst this collection of small molecules, compound <strong>33</strong> was the most potent and reduced <em>ex vivo</em> viabilities of schistosomula, juveniles, miracidia and adults. At its sub-lethal concentration to adults (3.13 µM), compound <strong>33 </strong>also significantly impacted oviposition, ovarian as well as vitellarian architecture and gonadal/neoblast stem cell proliferation. ATAC-seq analysis of adults demonstrated that compound <strong>33</strong> significantly affected chromatin structure (intragenic regions &gt; intergenic regions), especially in genes differentially expressed in cell populations (e.g., germinal stem cells, hes2<em><sup>+</sup></em>stem cell progeny, S1 cells and late female germinal cells) linked to these <em>ex vivo</em> phenotypes. The data presented here allow for visualisation in IGV https://igv.org/app/ Produced in collaboration with IHPE.
DOI: 10.6084/m9.figshare.21070348
title: Diabetes Mellitus Diagnosis and Support Ontology (DMDSOnt)

description: <strong>Diabetes Mellitus Diagnosis and Support Ontology (DMDSOnt) is shared</strong>. DMDSOnt is created using OWL 2.0. DMDSont developed contains various information (e.g., symptoms and signs, physical activities, genetic history of patients, frequently used clinical laboratory tests and other risk factors) and relationships used in the diagnosis and treatment of diabetes risk. In the DMDSOnt, 8 high-level classes which are <em>Disease, Patient</em>, <em>Suggestion</em>, <em>Symptom, Gender</em>,<em> C_Peptid_Val</em>, <em>Diagnose_Test</em>, and <em>Risk_Score_Result. In addition, </em> in the DMDSOnt, various Data Type Properties (DTP) are created as relations between classes and data types. In DMDSOnt, there are 7 Object Type Properties (OTP). Furthermore, 60 medical semantic rules created using SWRL.
DOI: 10.6084/m9.figshare.21070348.v2
title: Diabetes Mellitus Diagnosis and Support Ontology (DMDSOnt)

description: <strong>Diabetes Mellitus Diagnosis and Support Ontology (DMDSOnt) is shared</strong>. DMDSOnt is created using OWL 2.0. DMDSont developed contains various information (e.g., symptoms and signs, physical activities, genetic history of patients, frequently used clinical laboratory tests and other risk factors) and relationships used in the diagnosis and treatment of diabetes risk. In the DMDSOnt, 8 high-level classes which are <em>Disease, Patient</em>, <em>Suggestion</em>, <em>Symptom, Gender</em>,<em> C_Peptid_Val</em>, <em>Diagnose_Test</em>, and <em>Risk_Score_Result. In addition, </em> in the DMDSOnt, various Data Type Properties (DTP) are created as relations between classes and data types. In DMDSOnt, there are 7 Object Type Properties (OTP). Furthermore, 60 medical semantic rules created using SWRL.
DOI: 10.6084/m9.figshare.19228611.v3
title: Supplementary Material for: Three-dimensional interactive graphical model of the hindlimb muscles of the rat

description: Many questions in human movement sciences are addressed by exploiting the advantages of animal models. However, a 3D model of the musculoskeletal system of the frequently used rat model that includes a sufficient level of detail does not exist. Therefore, the aim of the present work was to develop an freely accessible 3D model of the rat hindlimb. Using the anatomical data of the Wistar rat (Mus norveqicus albinus) published by Green [Greene, 1935], a 3D representation of 34 muscles of the hindlimb was drawn. Two models were created, one using muscle like appearances and one using different colors. Each muscle can be viewed separately or within the context of its synergistic and antagonistic muscles. This model can serve to train new students before starting their experiments, but also for producing illustrations of experimental conditions or results. Further development of the model will be needed to equip it with the same advanced functionalities of some of the human anatomy atlases.
DOI: 10.6084/m9.figshare.21213293
title: Chaff Cutter Hand Injuries from Nakuru,Kenya.

description: We conducted a retrospective descriptive study on patients presenting with chaff-cutter hand injuries. The study was done from Nakuru County, in Kenya. We collected data for all patients who presented and were managed from Nakuru Level V Hospital during period starting July 2019 through June 2020. The case notes for the patients were retrieved from patients’ records and from the register of operations in the operating room. The patients’ biodata, type of injury and the surgical procedure performed were obtained. We included all injuries in all volar zones of the hand and used the Hand Injury Severity Score (HISS) to assign a HISS score for every patient. An enquiry was then made through a telephone call to the patients or their caretakers, a year after the month of hospital discharge, collecting data on whether the patient had resumed gainful activity
DOI: 10.6084/m9.figshare.21213614
title: Data sets of urban hotels: Reviews

description: Data were collected from a hotel reservation website (2,562 reviews extracted from Booking.com)
DOI: 10.6084/m9.figshare.21213614.v1
title: Data sets of urban hotels: Reviews

description: Data were collected from a hotel reservation website (2,562 reviews extracted from Booking.com)
DOI: 10.5281/zenodo.7113957
title: Bigger telcos are not necessarily better for infrastructure: A case study of EU versus US markets

description: This is data and slides for an anticipated forthcoming publication. Telecommunications companies (telcos) provide infrastructure essential to the delivery of digital content. Further, investment in next-generation communication technologies is also seen as critical to overall competitiveness of a market. This dataset results from an examination of the case to be made for European telco consolidation, through comparison with both telcos in the more-concentrated US market, and with other corporations involved in the information or ``eye-ball'' value chain. We find that both profits and growth for EU and US telcos are already comparable before investment in infrastructure, and that in line with standard theory, more value is returned to customers in the form of infrastructure investment in the less-concentrated, EU market. Profits are also in line with other companies in the value chain, with the notable exception of the extremely-concentrated digital ad exchanges segment. The data for the charts was collected from Bloomberg, so we therefore have protected the primary datasheet, available on specific request. No discrepancies with information available from other public sources was identified in respect of the data on revenue. However, companies do not report operating profit (EBIT) and EBITDA systematically in the same manner. We based our calculation on the Bloomberg adjusted EBIT and EBITDA. We thank Benedikt Ströbl for comparing the Bloomberg revenue, EBIT and EBITDA figures with other available sources for all companies in the sample. In particular, the data from Bloomberg was compared to data from Alphaquery and 10-K and annual reports. The below is a non-exhaustive list of the data points for which the Bloomberg adjusted data displayed a delta compared to the data that could be collected from the public sources used for verification, where only some years displayed a delta in the data the year is specified in brackets: (i) in respect of EBIT: Publicis (2018, 2019), NYT (2017) and Axel Springer (2017 and 2019); (ii) in respect of EBITDA (additionally to EBIT list): Verizon, Bertelsmann (2018), Interpublic (2019). Finally, to avoid any confusion in respect of the segment data for Alphabet, the data is presented as retrieved from Bloomberg in full on the tab “Alphabet”, data from the SEC reports used on top of the Bloomberg data to estimate the EBITDA is also reproduced on this tab.
DOI: 10.5281/zenodo.7113956
title: Bigger telcos are not necessarily better for infrastructure: A case study of EU versus US markets

description: This is data and slides for an anticipated forthcoming publication. Telecommunications companies (telcos) provide infrastructure essential to the delivery of digital content. Further, investment in next-generation communication technologies is also seen as critical to overall competitiveness of a market. This dataset results from an examination of the case to be made for European telco consolidation, through comparison with both telcos in the more-concentrated US market, and with other corporations involved in the information or ``eye-ball'' value chain. We find that both profits and growth for EU and US telcos are already comparable before investment in infrastructure, and that in line with standard theory, more value is returned to customers in the form of infrastructure investment in the less-concentrated, EU market. Profits are also in line with other companies in the value chain, with the notable exception of the extremely-concentrated digital ad exchanges segment. The data for the charts was collected from Bloomberg, so we therefore have protected the primary datasheet, available on specific request. No discrepancies with information available from other public sources was identified in respect of the data on revenue. However, companies do not report operating profit (EBIT) and EBITDA systematically in the same manner. We based our calculation on the Bloomberg adjusted EBIT and EBITDA. We thank Benedikt Ströbl for comparing the Bloomberg revenue, EBIT and EBITDA figures with other available sources for all companies in the sample. In particular, the data from Bloomberg was compared to data from Alphaquery and 10-K and annual reports. The below is a non-exhaustive list of the data points for which the Bloomberg adjusted data displayed a delta compared to the data that could be collected from the public sources used for verification, where only some years displayed a delta in the data the year is specified in brackets: (i) in respect of EBIT: Publicis (2018, 2019), NYT (2017) and Axel Springer (2017 and 2019); (ii) in respect of EBITDA (additionally to EBIT list): Verizon, Bertelsmann (2018), Interpublic (2019). Finally, to avoid any confusion in respect of the segment data for Alphabet, the data is presented as retrieved from Bloomberg in full on the tab “Alphabet”, data from the SEC reports used on top of the Bloomberg data to estimate the EBITDA is also reproduced on this tab.
DOI: 10.6084/m9.figshare.19291445
title: A chromosome-scale genome assembly of Malus domestica, a multi-stress resistant and high-quality apple variety

description: Hanfu apples have the advantages of cold resistance, drought resistance, and high yield, and they have become the main variety grown in the cool areas of Northeast, Northwest, and North China (40–42° N), which have an average temperature of -12 to -10 ℃ in January. Here, we proposed a chromosome-level Hanfu genome assembly using PacBio, Illumina and Hi-C sequencing data. The total contig length was 628.99 Mb. The Hanfu genome had a total of 39,617 genes, and we predicted the function for 38,816 (98.0%) of these. Evolutionary analysis showed that the differentiation time of apples and pears was approximately 8.9 Mya. Whole genome duplication (WGD) analysis revealed a γ event in Hanfu, which was a recent whole genome duplication when the 4dTv value was 0.075. This high quality genome will help explain the formation mechanism of the unique phenotype of Hanfu. In addition, it can provide reference for the genetic improvement of apples and for breeding more varieties with high resistance and high quality.
DOI: 10.6084/m9.figshare.19291445.v4
title: A chromosome-scale genome assembly of Malus domestica, a multi-stress resistant and high-quality apple variety

description: Hanfu apples have the advantages of cold resistance, drought resistance, and high yield, and they have become the main variety grown in the cool areas of Northeast, Northwest, and North China (40–42° N), which have an average temperature of -12 to -10 ℃ in January. Here, we proposed a chromosome-level Hanfu genome assembly using PacBio, Illumina and Hi-C sequencing data. The total contig length was 628.99 Mb. The Hanfu genome had a total of 39,617 genes, and we predicted the function for 38,816 (98.0%) of these. Evolutionary analysis showed that the differentiation time of apples and pears was approximately 8.9 Mya. Whole genome duplication (WGD) analysis revealed a γ event in Hanfu, which was a recent whole genome duplication when the 4dTv value was 0.075. This high quality genome will help explain the formation mechanism of the unique phenotype of Hanfu. In addition, it can provide reference for the genetic improvement of apples and for breeding more varieties with high resistance and high quality.
DOI: 10.6084/m9.figshare.19291445.v3
title: A chromosome-scale genome assembly of Malus domestica, a multi-stress resistant and high-quality apple variety

description: <b>Background: </b>Hanfu apples have the advantages of cold resistance, drought resistance, and high yield, and they have become the main variety grown in the cool areas of Northeast, Northwest, and North China (40–42° N), which have an average temperature of -12 to -10 ℃ in January.<b></b> <b>Results: </b>Here, we proposed a chromosome-level Hanfu genome assembly using PacBio long reads, Illumina short reads, 10× Genomics linked reads, and Hi-C data. The total contig length was 628.99 Mb, and the N50 contig length was 1.25 Mb. The total scaffold length was 631.76 Mb, the N50 scaffold length was 36.18 Mb, and the genome mount rate was 99.18%. The Hanfu genome had a total of 39 617 genes, and we predicted the function for 38 816 (98.0%) of these. Repetitive sequences accounted for 54.29% of the genome. Evolutionary analysis showed that the differentiation time of apples and pears was approximately 8.9 Mya. Whole genome duplication (WGD) analysis revealed a γ event in Hanfu, which was a recent whole genome duplication when the 4dTv value was 0.075. By comparing and analyzing the genomic differences between Hanfu and the homozygous line HFTH1, three variation types were determined: single-nucleotide polymorphisms (SNPs), insertions/deletions (indels), and structural variants (SVs). We identified 605 species-specific gene families. Among these, 122 Hanfu gene families (including 814 genes) significantly expanded, while 421 gene families significantly contracted (including 1528 genes), and there are 61 candidate genes subject to positive selection. A significant expansion of genes involved in the MAPK signal transduction pathway, calcium-mediated signal transduction pathway, plant hormone signal transduction pathway, sugar metabolism pathway, and phloem development were found; this may explain the formation of ‘Hanfu’s’ unique phenotype. <b>Conclusions:</b> This high quality genome will help explain the formation mechanism of the unique phenotype of Hanfu. In addition, it can provide reference for the genetic improvement of apples and for breeding more varieties with high resistance and high quality.
DOI: 10.6084/m9.figshare.21213617
title: Nat Met Article

description: These data belonged to AG Röszer, University of Ulm, Germany. They serve as backup and records.
DOI: 10.6084/m9.figshare.21213617.v1
title: Nat Met Article

description: These data belonged to AG Röszer, University of Ulm, Germany. They serve as backup and records.
DOI: 10.6084/m9.figshare.21175468
title: Citations_of_Retracted_Articles

description: The following dataset contains the citations of retracted articles and their metadata information.
DOI: 10.6084/m9.figshare.21175468.v3
title: Citations_of_Retracted_Articles

description: The following dataset contains the citations of retracted articles and their metadata information.
DOI: 10.6084/m9.figshare.21175468.v2
title: Citations_of_Retracted_Articles

description: The following dataset contains the citations of retracted articles and their metadata information.
DOI: 10.5281/zenodo.7115550
title: Real operating data of a photovoltaic system installed at Area Science Park - Trieste - Italy

description: Data collected from a monocrystalline silicon photovoltaic (PV) plant installed on building Q2 at Area Science Park in the Basovizza campus located in Trieste, Italy. The data represent almost 9 years of real operating conditions of the PV plant. Every 15 minutes the DC side electrical PV system working parameters were recorded, in addition also ambient temperature, irradiance in the plane of the modules and panel temperatures were recorded. Data are periodically downloaded using a control software.
DOI: 10.5281/zenodo.7115549
title: Real operating data of a photovoltaic system installed at Area Science Park - Trieste - Italy

description: Data collected from a monocrystalline silicon photovoltaic (PV) plant installed on building Q2 at Area Science Park in the Basovizza campus located in Trieste, Italy. The data represent almost 9 years of real operating conditions of the PV plant. Every 15 minutes the DC side electrical PV system working parameters were recorded, in addition also ambient temperature, irradiance in the plane of the modules and panel temperatures were recorded. Data are periodically downloaded using a control software.
DOI: 10.34740/kaggle/dsv/4254967
title: AutoXGB
DOI: 10.5517/ccdc.csd.cc230nzs
title: CCDC 1937065: Experimental Crystal Structure Determination

description: Related Article: Krishna Kumar, Priyanka Tiwari, Srikanta Moharana, Rajni Kant, Subrato Bhattacharya|2022|J.Mol.Struct.|1260|132801|doi:10.1016/j.molstruc.2022.132801
description: Related Article: Krishna Kumar, Priyanka Tiwari, Rajni Kant, Subrato Bhattacharya|2022|New J.Chem.|46|17854|doi:10.1039/D2NJ02722D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23wyvt
title: CCDC 1963287: Experimental Crystal Structure Determination

description: Related Article: Krishna Kumar, Priyanka Tiwari, Srikanta Moharana, Rajni Kant, Subrato Bhattacharya|2022|J.Mol.Struct.|1260|132801|doi:10.1016/j.molstruc.2022.132801
description: Related Article: Krishna Kumar, Priyanka Tiwari, Rajni Kant, Subrato Bhattacharya|2022|New J.Chem.|46|17854|doi:10.1039/D2NJ02722D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.