cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15472/sfa5w9
title: Colección de Aves (Chordata: Aves) del Centro de Colecciones Biológicas de la Universidad del Magdalena

description: El Centro de Colecciones Biológicas de la Universidad del Magdalena (CBUMAG) se constituyó formalmente en julio del año 2013 y obtuvo su registro ante el Instituto Humboldt en febrero de 2014 (Registro Nacional de Colecciones - RNC: 207). El CBUMAG se encuentra en una fase de consolidación, con un gran número de ejemplares catalogados y organizados en las diferentes colecciones, al que se suma el constante crecimiento con los depósitos de ejemplares hechos principalmente por los estudiantes de la Universidad del Magdalena a partir de sus trabajos de investigación, la misión es promover la preservación y curaduría de los ejemplares depositados en el mismo, desarrollar trabajos de investigación en taxonomía, sistemática, biogeografía y bioprospección con el fin de dar a conocer y promover el conocimiento sobre la biodiversidad de la región Caribe y sus usos potenciales.
description: Este set de datos contiene 427 registros de aves recolectados entre los años 2022 y 2023 en la Sierra Nevada de Santa Marta, en las cuencas de los ríos Don Diego y Fundación, se encuentran depositados en la Colección Biológica de la Universidad del Magdalena y otros son observaciones obtenidas a través de cámaras trampa.
DOI: 10.5281/zenodo.15103451
title: ENT Residency Research Spreadsheet and STROBE Guidelines
DOI: 10.5281/zenodo.15103452
title: MedEdPublish ENT Residency Research Spreadsheet
DOI: 10.5281/zenodo.15103562
title: ENT Residency Research Spreadsheet and STROBE Guidelines
DOI: 10.57830/2302316
title: San Francisco Bay Area Network Salmonids Monitoring Datasets - SENSITIVE

description: This data package contains salmonids monitoring datasets collected at Golden Gate National Recreation Area, and Point Reyes National Seashore. It includes the following datasets: Salmonids Habitat, Spawner Fish Measurements, Spawner Redd Measurements, Smolts Unmeasured, Smolts Measured, Summer Measurements, Summer Counts and Stream Index Habitat.
DOI: 10.15468/dl.ys3efv
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is b554c320-0560-11d8-b851-b8a03c50a862",
 "TaxonKey is Augochloropsis notophos (Vachal, 1903)"
 ]
}

 The dataset includes 118 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005834-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15001820
title: Data for Krokengen et al. (FEBS J 2025)

description: Data files for manuscript "On the synergy between myelin proteins P0, MBP, and P2 in peripheral nerve major dense line formation" by Krokengen et al., accepted in FEBS J (2025).
DOI: 10.5281/zenodo.15001821
title: Data for Krokengen et al. (FEBS J 2025)

description: Data files for manuscript "On the synergy between myelin proteins P0, MBP, and P2 in peripheral nerve major dense line formation" by Krokengen et al., accepted in FEBS J (2025).
DOI: 10.57830/2309357
title: Salmonids Monitoring for the San Francisco Bay Area Network: 1994-2024 - Data Package

description: This data package contains salmonids monitoring datasets collected at Golden Gate National Recreation Area, and Point Reyes National Seashore. It includes the following datasets: Salmonid Events, Spawner Fish Measurements, Spawner Redd Measurements, Smolts Unmeasured, Smolts Measured, Summer Measurements, Snorkel Counts, Salmonids Habitat, Stream Index Habitat, Coho Smolt Estimates, Coho Juvenile Estimates and and PIT Tag Antennas.
DOI: 10.6084/m9.figshare.28688051
title: Dataset - Identification of ischemic stroke patients based on plasma concentrations of extracellular vesicles

description: Flow cytometry experiments were performed to determine the plasma concentration of extracellular vesicle (EV) subtypes in patients with and without ischemic stroke. <br>Datafiles can be shared upon request.
DOI: 10.5281/zenodo.15102727
title: Characterisation of transgenic lines labelling reticulospinal neurons in larval zebrafish

description: Pre-print

Characterisation of transgenic lines labelling reticulospinal neurons in larval zebrafish. For more information see pre-print here.

 

Abstract

From lamprey to monkeys, the organization of the descending control of locomotion is conserved across vertebrates. Reticulospinal neurons (RSNs) form a bottleneck for descending commands, receiving innervation from diencephalic and mesencephalic locomotor centres and providing locomotor drive to spinal motor circuits. Given their optical accessibility in early development, larval zebrafish offer a unique opportunity to study reticulospinal circuitry. In fish, RSNs are few, highly stereotyped, uniquely identifiable, large neurons spanning from the midbrain to the medulla. Classically labelled by tracer dye injections into the spinal cord, recent advances in genetic tools have facilitated the targeted expression of transgenes in diverse brainstem neurons of larval zebrafish. Here, we provide a comparative characterization of four existing and three newly established transgenic lines in larval zebrafish. We determine which identified neurons are consistently labelled and offer projection-specific genetic access to subpopulations of RSNs. We showcase transgenic lines that label most or all RSNs (nefma, adcyap1b_ccu96Et) or subsets of RSNs, including ipsilateral (vsx2, calca_ccu75Et) contralateral (pcp4a_ccu97Tg) or all (tiam2a_y264Et) components of the Mauthner array, or midbrain-only RSNs (s1171tEt). In addition to RSNs, selected transgenic lines (nefma, s1171tEt, calca_ccu75Et) labelled other potential neurons of interest in the brainstem. For those, we performed in situ hybridisation to show expression patterns of several excitatory and inhibitory neurotransmitters at larval stages as well as glutamatergic expression patterns in juvenile fish. We provide an overview of transgene expression in the brainstem of larval zebrafish that serves to lay a foundation for future studies in the supraspinal control of locomotion.

 

Data

We provide a stack for an example fish from each transgenic line, as well as a ROI file that labels reticulospinal neurons in the nefma fish to be used in the ROI manager in ImageJ. First channel (green) is the transgenic line, second channel (grey) is the tERK counter-stain, third channel (magenta) is the reticulospinal backfill.
DOI: 10.5281/zenodo.15102728
title: Characterisation of transgenic lines labelling reticulospinal neurons in larval zebrafish

description: Pre-print

Characterisation of transgenic lines labelling reticulospinal neurons in larval zebrafish. For more information see pre-print here.

 

Abstract

From lamprey to monkeys, the organization of the descending control of locomotion is conserved across vertebrates. Reticulospinal neurons (RSNs) form a bottleneck for descending commands, receiving innervation from diencephalic and mesencephalic locomotor centres and providing locomotor drive to spinal motor circuits. Given their optical accessibility in early development, larval zebrafish offer a unique opportunity to study reticulospinal circuitry. In fish, RSNs are few, highly stereotyped, uniquely identifiable, large neurons spanning from the midbrain to the medulla. Classically labelled by tracer dye injections into the spinal cord, recent advances in genetic tools have facilitated the targeted expression of transgenes in diverse brainstem neurons of larval zebrafish. Here, we provide a comparative characterization of four existing and three newly established transgenic lines in larval zebrafish. We determine which identified neurons are consistently labelled and offer projection-specific genetic access to subpopulations of RSNs. We showcase transgenic lines that label most or all RSNs (nefma, adcyap1b_ccu96Et) or subsets of RSNs, including ipsilateral (vsx2, calca_ccu75Et) contralateral (pcp4a_ccu97Tg) or all (tiam2a_y264Et) components of the Mauthner array, or midbrain-only RSNs (s1171tEt). In addition to RSNs, selected transgenic lines (nefma, s1171tEt, calca_ccu75Et) labelled other potential neurons of interest in the brainstem. For those, we performed in situ hybridisation to show expression patterns of several excitatory and inhibitory neurotransmitters at larval stages as well as glutamatergic expression patterns in juvenile fish. We provide an overview of transgene expression in the brainstem of larval zebrafish that serves to lay a foundation for future studies in the supraspinal control of locomotion.

 

Data

We provide a stack for an example fish from each transgenic line, as well as a ROI file that labels reticulospinal neurons in the nefma fish to be used in the ROI manager in ImageJ. First channel (green) is the transgenic line, second channel (grey) is the tERK counter-stain, third channel (magenta) is the reticulospinal backfill.
DOI: 10.57830/2302392
title: San Francisco Bay Area Network Salmonids Monitoring Datasets

description: This datapackage contains salmonids monitoring datasets collected at Golden Gate National Recreation Area, and Point Reyes National Seashore. It includes the following datasets: Salmonids Habitat, Spawner Fish Measurements, Spawner Redd Measurements, Smolts Unmeasured, Smolts Measured, Summer Measurements, Summer Counts and Stream Index Habitat.
DOI: 10.15468/dl.uukg6f
title: Occurrence Download

description: A dataset containing 14348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-128.53189 30.43647,-111.88053 30.43647,-111.88053 50.50499,-128.53189 50.50499,-128.53189 30.43647))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sequoia sempervirens (D.Don) Endl."
 ]
}

 The dataset includes 14348 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005835-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57830/2301746
title: San Francisco Bay Area Network Plant Community Monitoring Datasets - SENSITIVE

description: This dataset contains monitoring data for selected vegetation communities from sample points at Golden Gate National Recreation Area, Muir Woods National Monument, Point Reyes National Seashore, and Pinnacles National Park. It includes data on a suite of vegetation parameters that represent structure and composition metrics, such as cover by species, density of woody plants, and species richness, among others.
DOI: 10.15468/dl.69q65z
title: Occurrence Download

description: A dataset containing 4481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 4481 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005837-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15103565
title: Stopwords

description: This stopwords file consists of stopwords suggested by my Professor, Dr. Shawn Graham as well as stopwords from two souces:

https://countwordsfree.com/stopwords

https://github.com/stopwords-iso/stopwords-en/blob/master/stopwords-en.txt

Additionally, I added some stop words that were repetative and not useful to the purpose of the research.
DOI: 10.5281/zenodo.15103566
title: Stopwords

description: This stopwords file consists of stopwords suggested by my Professor, Dr. Shawn Graham as well as stopwords from two souces:

https://countwordsfree.com/stopwords

https://github.com/stopwords-iso/stopwords-en/blob/master/stopwords-en.txt

Additionally, I added some stop words that were repetative and not useful to the purpose of the research.
DOI: 10.5281/zenodo.15103584
title: NTA RAW DATA from D4.3 1st Report on SMNPs presence in the analysed field samples_Part 1

description: Raw data was obtained to analyse LABPLAS water samples for small micro- and nanoplastics using a nanoparticle analysis system. This is one part of the samples.
DOI: 10.5281/zenodo.15103585
title: NTA RAW DATA from D4.3 1st Report on SMNPs presence in the analysed field samples_Part 1

description: Raw data was obtained to analyse LABPLAS water samples for small micro- and nanoplastics using a nanoparticle analysis system. This is one part of the samples.
DOI: 10.5281/zenodo.15103596
title: NTA RAW DATA from D4.3 1st Report on SMNPs presence in the analysed field samples_Part 1

description: Raw data was obtained to analyse LABPLAS water samples for small micro- and nanoplastics using a nanoparticle analysis system. This is one part of the samples.
DOI: 10.15468/dl.83mznw
title: Occurrence Download

description: A dataset containing 108494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.0686 -0.50737,8.09355 -0.50737,8.09355 1.88027,6.0686 1.88027,6.0686 -0.50737))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 108494 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005810-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rss87r
title: Occurrence Download

description: A dataset containing 18929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 18929 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005838-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23719/1532035
title: Wetland accretion rates

description: National Aquatic Resource Surveys wetland data and accretion rates and carbon stocks in Oregon tidal marshes
DOI: 10.15472/konfte
title: Colección de Mamíferos (Chordata: Mammalia) del Centro de Colecciones Biológicas de la Universidad del Magdalena

description: El Centro de Colecciones Biológicas de la Universidad del Magdalena (CBUMAG) se constituyó formalmente en julio del año 2013 y obtuvo su registro ante el Instituto Humboldt en febrero de 2014 (Registro Nacional de Colecciones - RNC: 207). El CBUMAG se encuentra en una fase de consolidación, con un gran número de ejemplares catalogados y organizados en las diferentes colecciones, al que se suma el constante crecimiento con los depósitos de ejemplares hechos principalmente por los estudiantes de la Universidad del Magdalena a partir de sus trabajos de investigación, la misión es promover la preservación y curaduría de los ejemplares depositados en el mismo, desarrollar trabajos de investigación en taxonomía, sistemática, biogeografía y bioprospección con el fin de dar a conocer y promover el conocimiento sobre la biodiversidad de la región Caribe y sus usos potenciales.
description: Este set de datos contiene 398 registros de mamíferos recolectados entre los años 2022 y 2023 en la Sierra Nevada de Santa Marta, en las cuencas de los ríos Don Diego y Fundación, se encuentran depositados en la Colección Biológica de la Universidad del Magdalena y otros son observaciones obtenidas a través de cámaras trampa.
DOI: 10.15468/dl.42ayx5
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125.67080 20.65076,-51.32920 20.65076,-51.32920 50.34924,-125.67080 50.34924,-125.67080 20.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cymatodera undulata (Say, 1825)"
 ]
}

 The dataset includes 363 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005841-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ch3f8h
title: Occurrence Download

description: A dataset containing 37138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grus americana (Linnaeus, 1758)"
 ]
}

 The dataset includes 37138 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005840-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15101108
title: Supporting Information for "Efficient and Reproducible RNA Molecular Dynamics Simulations in GROMACS: A Standardized Approach"

description: The Supporting Information includes all necessary files and data for reproducing the RNA molecular dynamics simulations conducted in this study. It contains system preparation files, including input structures, topology, and configuration scripts, along with GROMACS .mdp files for energy minimization, equilibration, and production runs. The force field parameters and solvation details are provided to ensure consistency in setup. Additionally, trajectory analysis scripts for RMSD, RMSF, radius of gyration, hydrogen bonding, and principal component analysis (PCA) are included. A comprehensive GROMACS command file is provided for seamless execution of the workflow. Processed results, including key plots and structural metrics, are also available.
DOI: 10.5281/zenodo.15100555
title: Supporting Information for "Efficient and Reproducible RNA Molecular Dynamics Simulations in GROMACS: A Standardized Approach"

description: The Supporting Information includes all necessary files and data for reproducing the RNA molecular dynamics simulations conducted in this study. It contains system preparation files, including input structures, topology, and configuration scripts, along with GROMACS .mdp files for energy minimization, equilibration, and production runs. The force field parameters and solvation details are provided to ensure consistency in setup. Additionally, trajectory analysis scripts for RMSD, RMSF, radius of gyration, hydrogen bonding, and principal component analysis (PCA) are included. A comprehensive GROMACS command file is provided for seamless execution of the workflow. Processed results, including key plots and structural metrics, are also available.
DOI: 10.5281/zenodo.15100556
title: Supporting Information for "Efficient and Reproducible RNA Molecular Dynamics Simulations in GROMACS: A Standardized Approach"

description: The Supporting Information includes all necessary files and data for reproducing the RNA molecular dynamics simulations conducted in this study. It contains system preparation files, including input structures, topology, and configuration scripts, along with GROMACS .mdp files for energy minimization, equilibration, and production runs. The force field parameters and solvation details are provided to ensure consistency in setup. Additionally, trajectory analysis scripts for RMSD, RMSF, radius of gyration, hydrogen bonding, and principal component analysis (PCA) are included. A comprehensive GROMACS command file is provided for seamless execution of the workflow. Processed results, including key plots and structural metrics, are also available.
DOI: 10.15468/dl.4geqgk
title: Occurrence Download

description: A dataset containing 3402 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus argillaceus (Scopoli, 1763)"
 ]
}

 The dataset includes 3402 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005842-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28688072
title: JPM-CORPUS-we-ve-asked-six-times.xlsx

description: This dataset contains 580 text messages from Democratically aligned groups, including the Biden/Harris campaign, during the 2024 elections, covering 11 months, from mid-December 2023 to mid-November 2024. The messages were collected in a self-study of personal communication technology and represent the texts sent to one person over the timeframe of the study.
DOI: 10.6084/m9.figshare.28688072.v1
title: JPM-CORPUS-we-ve-asked-six-times.xlsx

description: This dataset contains 580 text messages from Democratically aligned groups, including the Biden/Harris campaign, during the 2024 elections, covering 11 months, from mid-December 2023 to mid-November 2024. The messages were collected in a self-study of personal communication technology and represent the texts sent to one person over the timeframe of the study.
DOI: 10.15468/dl.jeax28
title: Occurrence Download

description: A dataset containing 12627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 12627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005843-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dakybz
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Totoaba Villamar, 1980"
 ]
}

 The dataset includes 374 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005844-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rynzw5
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125.67080 20.65076,-51.32920 20.65076,-51.32920 50.34924,-125.67080 50.34924,-125.67080 20.65076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cymatodera undulata (Say, 1825)"
 ]
}

 The dataset includes 363 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005845-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gyf8a
title: Occurrence Download

description: A dataset containing 5701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agalychnis callidryas (Cope, 1862)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5701 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005847-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjdhtb
title: Occurrence Download

description: A dataset containing 8117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.9809 7.23736,-71.87313 6.65009,-72.54711 9.1099,-74.46153 9.28175,-73.9809 7.23736))",
 "OccurrenceStatus is Present",
 "TaxonKey is Columbina von Spix, 1825"
 ]
}

 The dataset includes 8117 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005848-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.