cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5127451.v1
title: Supplementary Material for: High Expression of Major Histocompatibility Complex Class I in Clear Cell Renal Cell Carcinoma Is Associated with Improved Prognosis

description: <b><i>Introduction:</i></b> In this study we analyzed major histocompatibility complex class I (MHCI) expression as a potential prognostic immune marker for patients with clear cell renal cell carcinoma (ccRCC). <b><i>Patients and Methods:</i></b> 34 patients with localized ccRCC (pT1-pT3) who had undergone nephrectomy and had at least 4 years of clinical follow-up data were included in the study. Immunohistochemical staining for MHCI was performed on tumor sections. An automated image analysis algorithm was applied to representative tumor areas to quantitate the proportion of stained pixels (positivity score = positive pixels/total pixels) on scanned digital slides. <b><i>Results:</i></b> At the end of the study, the patients who were alive had increased MHCI expression (mean positivity score 0.80) compared to those who died of the disease (mean positivity score 0.53; p &lt; 0.0001, t test). Patients who were alive with recurrence had increased MHCI expression (positivity score 0.81) compared to those who succumbed to their disease recurrence (positivity score 0.53; p &lt; 0.0001, t test). Survival was higher among patients with high MHCI expression compared to patients with low MHCI expression (p &lt; 0.0001, Mantel-Cox). <b><i>Conclusions:</i></b> With an automated high-throughput image analysis technique, this study shows that higher tumor cell MHCI expression promotes increased survival and reduced incidence of recurrence compared to patients with lower tumor cell MHCI expression.
DOI: 10.6084/m9.figshare.28930472.v1
title: <b>Assessment of Data Quality and Health Workforce Competency on Routine Health Information System Tasks in Ethiopia</b>(Quant dat Set)

description: This study assessed the performance of the Routine Health Information System (RHIS) across selected health centers in Sidama, Amhara, Somali, Oromia, and Addis Ababa, Ethiopia. Using a cross-sectional design and the PRISM framework, the research evaluated data quality and health workforce competency. Key findings revealed discrepancies in reported versus source data, particularly in family planning and malaria indicators, with overall data quality at 56.4%—well below the national target of 90%. Only 46% of Performance Monitoring Team (PMT) members demonstrated high actual competency, while service providers showed moderate levels of knowledge, attitude, and perceived competency. The study identified significant associations between providers' experience, knowledge, and attitude with their perceived competency. These insights were used to design targeted interventions, including a Telegram skill bot and PMT-focused tools, aimed at improving data quality and workforce capacity.
DOI: 10.17632/w7bpvsctx5
title: Int_Families

description: This database collects data from an intervention based on Ortuño's Intelligent Families program.
DOI: 10.6084/m9.figshare.28142453.v1
title: CT-ADE: An Evaluation Benchmark for Adverse Drug Event Prediction from Clinical Trial Results

description: CT-ADE is a comprehensive benchmark dataset for multilabel predictive modeling of adverse drug events (ADEs) in monopharmacy treatments. It combines data extracted from clinical trial results with contextual information such as patient demographics, treatment regimens, and standardized ADE annotations.
DOI: 10.6084/m9.figshare.5170318.v1
title: HHPred alignment file

description: This file contains the alignment generated by HHPred for use in the modeling program MODELLER. The alignment file is generated between a target sequence and 2 template structures found in the Protein Databank database. This file will then be used in MODELLER to generate a predicted model of your target protein sequence.
DOI: 10.6084/m9.figshare.19518814.v1
title: Kidney

description: The folder contains: Metabolites-based_tissue and Metabolites_, Enzymes-, Reactions-based_PDGSMMs networks of kidney cancer in graphml format; sample_sheet.tsv tabular file containing GDC samples metadata, namely clinical information of samples; dictionary_id excel file for correspondence between Biomodel (PDSGSMM) id and TCGA id.
DOI: 10.6084/m9.figshare.25285288.v1
title: mammals_db

description: MySQL database on small mammals of Middle Volga Region. Acession options provided in "readme.txt" file.
DOI: 10.60893/figshare.jcp.26395894.v1
title: Supplemental Number 1

description: Additional transient optical data.
DOI: 10.17632/d7f2p6h4x3
title: Hand and Arm Rehabilitation 2D Dataset

description: The accelerometer readings for the twelve hand and arm rehabilitation exercises for 40 trials has been converted into grayscale images.

S. No.    Limb part 	    Exercise	                           Abbreviations employed
			                                                        Successful completion	Partial completion
1	      Hand	        Wrist Extension	                                       Wex_1	Wex_1P
2		                Wrist Flexion                                                  Wex_2	Wex_2P
3		                Pronation                                                        Wex_3	Wex_3P
4		                Supination                                                      Wex_4	Wex_4P
5		                Radial Deviation	                                        Wex_5	Wex_5P
6		                Ulnar Deviation	                                        Wex_6	Wex_6P
7	   Forearm	Arm Flexion	                                                Fex_1	Fex_1P
8		                Arm Extension                                                Fex_2	Fex_2P
9		                Arm movement towards chest	                Fex_3	Fex_3P
10		                Arm movement away from chest                   Fex_4	Fex_4P
11	Shoulder         Shoulder Abduction                                        Sex_1	Sex_1P
12		                Shoulder Adduction                                        Sex_2	Sex_2P
DOI: 10.6084/m9.figshare.16590365.v1
title: Data resulting from the study for addressing unresolved complex mixture of I/SVOCs emitted from incomplete combustion of solid fuels by nontarget analysis

description: This study addressed the chemical complexity of unresolved complex mixture by employing two-dimensional gas chromatography−time-of-flight mass spectrometry. Previously unresolved complex mixture in I/SVOCs was effectively reduced by nontarget analysis. Furthermore, secondary organic aerosol production can be accurately predicted via the highly identified I/SVOCs compounds basing on their volatility distributions, which were obtained from comprehensive analyses of I/SVOCs. These results suggest that nontarget analysis developed herein significantly improves the accuracy of I/SVOCs estimates used in identifying chemical compounds and environmental impacts.
DOI: 10.6084/m9.figshare.16860238.v1
title: Going for gold: exploring the reach and impact of Gold open access articles in hybrid journals [data set]

description: In 2021, Springer Nature commissioned an analysis of 60,567 articles published in 1,262 of its hybrid journals, measuring reach by the number of downloads and the attention reflected in the Altmetric Attention Score, and impact through the number of citations.<br>This is the data set for the white paper which presents the findings from that analysis, which show a clear advantage in reach and impact for articles published OA in hybrid journals compared to non-OA articles in the same journals, and for the first time also an advantage for full (Gold) OA articles compared to subscription articles where an earlier article version (such as an accepted manuscript (AM) or preprint) has been self-archived in an OA repository. <br>White paper: https://figshare.com/articles/journal_contribution/Going_for_gold_exploring_the_reach_and_impact_of_Gold_open_access_articles_in_hybrid_journals_white_paper_/16860229
DOI: 10.6084/m9.figshare.3523109.v1
title: Data Paper. Data Paper

description: File List Data files are in ASCII format, tab delimited. No compression schemes are used. Data set consists of 1440 records, not including header row. Mammal_lifehistories_v2.txt Description The purpose of this data set was to compile general life history characteristics for a variety of mammalian species to perform comparative life history analyses among different taxa and different body size groups. Data were collected from the literature, and data sources are documented for each species within the data file. Since life history characteristics will show minor variation with environmental conditions (resource availability, climate, competitive environment, and predation pressure) a general life history for each species was sought to average over minor differences in local populations. To create a general life history for each species, life history values are often an average from several literature sources. Life history variables included in the data set are: Maximum Lifespan (months), Age of First Reproduction (months), Gestation time (months), Weaning age (months), Weaning Mass (grams), Litter size (months), litters per year, newborn mass (grams), and adult body mass (grams). Since these data were collected with the intent to examine general life history patterns, these data are good for examining large-scale patterns, specifically in comparing life history characteristics for different orders or families of mammals. All orders of placental mammals, except Chiroptera (bats) are represented in this data set: Artiodactyla (161 species), Carnivora (197), Cetacea (55 species), Dermoptera (2 species), Hydracoidea (4 species), Insectivora (91 species), Lagomorpha (42 species), Macroscelidea (10 species), Perissodactyla (15 species), Pholidota (7 species), Primates (156 species), Proboscidea (2 species), Rodentia (665 species), Scandentia (7 species), Sirenia (5 species), Tubulidentata (1 species), and Xenarthra (20 species). There are two caveats on this data set, however. First, these data are not appropriate for asking population-level questions where the integration of life history parameters with specific environmental conditions is important. Second, while this data set is extensive, it is not exhaustive. The creation of an exhaustive data set is the ultimate goal, but that goal is still several years from completion. In the meantime, researchers utilizing the data set are urged to conduct their own search for data not reported within the current data set. Researchers are also encouraged to contact the author of the data set and alert her to literature sources containing data for missing variables or species. The updated data set will be made available to <i>Ecological Archives</i> periodically. <i>Key words</i>: <i>adult mass; age of first reproduction; gestation time; life history; litter size; litters per year; maximum lifespan; newborn mass; non-volant mamals; weaning age.</i>
DOI: 10.6084/m9.figshare.8066621.v1
title: Repeat units of MHM1 and MHM2

description: The consensus sequences for repeat units of chicken MHM1 and MHM2 (in FASTA format). Sequence coordinates are based on the Gallus_gallus-5.0 (GCA_000002315.3) assembly. The header is in the following format: MHM1/2_Zstart_Zend_#Iterations.
DOI: 10.6084/m9.figshare.27074893.v1
title: Dataset: Foraminiferal denitrification and deep bioirrigation influence benthic biogeochemical cycling in a seasonally hypoxic fjord

description: This dataset contains the data used in the manuscript "Foraminiferal denitrification and deep bioirrigation influence benthic biogeochemical cycling in a seasonally hypoxic fjord".Abstract of the paper: Benthic macro- and micro-biota often play significant roles in controlling the biogeochemical dynamics in sediments. Their activity can be influenced by oxygen availability and impacted by the rise in global hypoxia in coastal regions over the last decades. To understand how these organisms interact with coastal hypoxia and influence sediment biogeochemistry, we undertook a study of early diagenesis in Bedford Basin, a seasonally hypoxic fjord on the West Atlantic coast in Nova Scotia, Canada, using a combination of observations and reaction-transport modeling. We observed that the seafloor was a source of ammonium and sink of nitrate with average fluxes of 2.2±1.8 and -0.9±0.7 mmol m<sup>-2</sup> d<sup>-1 </sup>respectively. The diffusive oxygen uptake was 14±4.6 mmol m<sup>-2</sup> d<sup>-1 </sup>and the total organic carbon content in collected sediment cores was 5-7% with a C/N ratio of ~10. The pyrite content increased steadily from 0.5 wt.% Fe at surface to ~2 wt.% Fe at 20 cm depth. Hydrogen sulfide was negligible down to 25 cm depth most of the time. The sediment was inhabited by tube-forming polychaete <i>Spiochaetopterus sp. </i>that formed tubes up to ~30 cm in length. The living foraminiferal assemblage in the top 5 cm sediment was found to be dominated (&gt;85%) by nitrate-storing and denitrifying benthic foraminifera <i>Stainforthia fusiformis</i>. These observations were used to develop and constrain a biogeochemical reaction-transport model. The model results suggest that the observed decrease in porewater concentrations of ammonium and dissolved inorganic carbon below 5 cm depth, was due to deep bioirrigation by tubeworms. This bioirrigation was responsible for almost 50% of their benthic efflux. The model further revealed that the deep bioirrigation along with bioturbation and iron cycling prevented accumulation of free sulfide in the top 25 cm sediment despite oxygen penetration depths of ~1 mm. Modelled organic carbon and nitrogen deposition was 25.2 and 2.9 mmol m<sup>-2</sup> d<sup>-1</sup> with burial efficiencies of 23% and 17%, respectively. The model indicated a total denitrification rate of 1.3 mmol N m<sup>-2</sup> d<sup>-1</sup> that was largely (~70%) driven by benthic foraminifera. This study reports the first evidence of foraminiferal denitrification in western Atlantic coastal sediments, and suggests that eukaryote mediated denitrification is an important driver of sediment N-loss in seasonally hypoxic environments, a process that has been traditionally assumed to be carried out by prokaryotic microbes.
DOI: 10.6084/m9.figshare.28013009.v1
title: Solitary Bubble Rise Data Bank

description: Experimental data bank collected from the literature (7192 data points from 58 literature studies) concerning solitary bubbles rising under the action of buoyancy through quiescent liquids
DOI: 10.6084/m9.figshare.7109123.v1
title: Interview - Christine Perakslis

description: This dataset 'Interview - Christine Perakslis’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.17632/683ybmk665
title: DNA extraction from Fungi

description: QC data from individual DNA extractions.
DOI: 10.6084/m9.figshare.20219411.v1
title: First Dates Dataset

description: A dataset generated from several episodes of the Channel 4 programme First Dates. Each column in the dataset relates to one of several key factors: id - The couple ID which is used to identify which couple was in the date, this is not sequntial. transcript - The speech spoken in that time segment. sex - Participants sex, eirther male or female emo_speaker - Emotional response of the speaker (their speech is seen in the transcripts) emo_listener - Emotional response of the listener speaker_intonation - The manner in which the speaker spoke. target - Who the speaker was speaking to. label - 0 for an unsuccessful date, 1 for a successul date. All efforts have been made to ensure this dataset was collected in line with copyright legislation regarding fair use. All rights belonging to the oringinal progammes content belongs with the respective copyright holders. All derivative works of this provided dataset must reference Channel 4 and First Dates directly, in addition to the author of this dataset.
DOI: 10.6084/m9.figshare.14544495.v1
title: Mechanical strength of RNA knot in Zika virus protects against cellular defenses: optical tweezers data

description: Excel files with force-extension curve data. File title indicates type of molecule (wild-type or mutant) and presence of antisense oligos or absence of Mg ions. In each file, data are presented as paired columns of force ("F", values listed in pN) and extension ("Ext", values listed in nm) data for sequential unfolding and refolding measurements (refolding data indicated by "_r" in column titles). The remainder of the column name indicates the molecule number (1, 2,...), followed by an underscore and the set of curves measured from that molecules (1, 2,...), followed by an underscore and the number of the pull within that set (1, 2,...). Each set of pulls is organized in a separate sheet in the file.<br>
DOI: 10.6084/m9.figshare.28840580.v1
title: Leukemia Classification

description: Classifying Acute Lymphoblastic Leukemia cells from normal cells using deep learning method
DOI: 10.6084/m9.figshare.22801706.v1
title: Dataset of study: Exploring the validity of an optoelectronic integrated cone beam computed tomography jaw tracking system

description: The excel tabs are the coordinates of the reference points of the three skulls (S1, S2, S3) of the two observers (HH and AD) <br> HH1: first observer first measurements; HH2: first observer second measurements; AD1: second observer first measurements; AD2: second observer second measurements <br> Column A are the different positions of the mandible (with the aid of the wafer) Column B are the measured reference points Column C-E are the coordinates of the 4D-Jaw Motion (for the x, y and z axis) Column G-I are the coordinates of the 4D-Jaw Motion (for the x, y and z axis) Column K-N are the measured distances between the Gold standard and the Jaw Motion <br> Column K is Difference X = Xgs - X4D-JM Column L is Difference Y = Ygs - Y4D-JM Column M is Difference Z = Zgs - Z4D-JM Column N is the Vector diference = √((Xgs - X4D-JM)2 + (Ygs - Y4D-JM )2 +(Zgs - Z4D-JM )2)
DOI: 10.6084/m9.figshare.28856813.v2
title: Source Data for Manuscript

description: While ionic liquids (ILs) have diverse applications, their potential in biomedical applications remains largely untapped due to gaps in systematic understanding of the spectrum of IL biosafety (biocompatibility/toxicity). Here, we establish an IL library and identify an in vitro reduction in biocompatibility (increased toxicity) with increased ILs’ cationic alkyl chain length. Particularly, we present compelling evidence for IL nanoaggregates in aqueous environment, thereby elucidating the mechanisms involved in cell interactions. ILs with short cationic alkyl chains (scILs) are restricted in intracellular vesicles, whereas ILs with long cationic alkyl chains (lcILs) accumulate to the mitochondria for inducing mitophagy and apoptosis. The occurrence of dysfunctional behaviour in lcILs is also observed in vivo, with a positive correlation between the lcIL signal in tissues and mitophagy/apoptotic levels. Irrespective of the administration routes (oral/intramuscular/intravenous), scILs exhibit ~30-80 times greater tolerance than lcILs. The feasibility of scIL nanoaggregates as carriers for insoluble drugs is thus validated, and an enhanced bioavailability over the commercial tablet is acquired. The findings obtained by integrating computational analysis with diverse cell/animal evaluations (from multiple cell lines, cell spheroids, patient-derived organoids to male murine and canine models) offer unique insights into the behaviour, mechanisms, and biomedical application scenarios of IL nanoaggregates.
DOI: 10.17632/4dhff9k2xb
title: Control of coronary lymphangiogenesis by epicardial VEGFC/D

description: Source data for manuscript of the same title
DOI: 10.6084/m9.figshare.13336651.v1
title: Supplemental tables 1-2 from What processes must we understand to forecast regional-scale population dynamics?

description: Paremeter descriptions
DOI: 10.6084/m9.figshare.21127423.v2
title: High-resolution gridded rainfall dataset for Peru - PISCOp v2.1 update

description: Development of high-resolution daily and monthly gridded rainfall dataset over Peru (PISCOp), for the 1981–2019 period at ~10 km (0.1°) spatial resolution for the entire continental Peruvian territory. The <strong>PISCOp</strong> framework presents four main procedures: i) quality control, and ii) gap filling of raingauge datasets. Then, iii) spatial interpolation of daily and monthly rainfall using spatial predictors based on rainfall precipitation, radar-gauge merged precipitation climatologies, among others. After that, a iv) simple monthly correction factor applied to daily estimates. The dataset are update version 2.1.
DOI: 10.17632/3pyh9jpgzg
title: Supporting information for Antúnez & Ricker 2025 in Ecology and Evolution

description: The Excel file represents the supporting information for the article of Antúnez & Ricker (2025) in the journal "Ecology and Evolution". It contains three sheets: "S1a Raw data", "S1b Regression parameters", and "S1c Limits for symmetry".
DOI: 10.17632/8xjhwgdfd8
title: Cambodian commercial banks data

description: Data pertaining to commercial banks is sourced from the National Bank of Cambodia, accessible via the following website: https://www.nbc.gov.kh/english/economic_research/banks_reports.php. Furthermore, data concerning broad money and the inflation rate are obtained from the Asian Development Bank database.