cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/ts4s-jc26
title: RV Investigator Voyage IN2021_E02 End of Voyage (EOV) Archive

description: This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2021_E02, titled "Kongsberg and seismic commission and trials." The voyage took place between November 20 and November 28, 2021 (AEST), departing from Hobart (TAS) and returning to Hobart. For further information please refer to the voyage documentation links. Instruments used and data collected include: Regular measurements: Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Greenhouse Gas Analysers (Picarro), Disdrometer, Fisheries Echosounder (EK80), Multibeam Echosounder (EM710, EM122), Sub-bottom Profiler (SBP120), GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen Optode, Infrared Sea Surface Temperature Autonomous Radiometer (ISAR), pCO2, Gravimeter, Multiangle Absorption Photometer (MAAP), Ozone Sensor, Nephelometer, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Starboard and Portside Radiometers, Air Sampler, Ultra Short BaseLine Underwater Positioning System (USBL), Weather Radar, Expendable Bathythermographs (XBTs). Voyage-specific measurements: Deep Towed Camera (DTC), Autonomous Surface Vehicle CO2 sensor (ASVCO2). The archive for the IN2021_E02 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (DAP, https://data.csiro.au/dap/), providing access to voyage participants and processors of the data collected on the voyage. All voyage documentation is available electronically to MNF support via the local network. Access to voyage documentation for non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.
DOI: 10.48577/jpl.rqizta
title: Experimental Characterization of the Pyridine:Acetylene Co-crystal and Implications for Titan’s Surface

description: Titan, Saturn’s largest moon, has a plethora of organic compounds in the atmosphere and on the surface that interact with each other. Cryominerals such as co-crystals may influence the geologic processes and chemical composition of Titan’s surface, which in turn informs our understanding of how Titan may have evolved, how the surface is continuing to change, as well as the extent of Titan’s habitability. Previous work has shown that a pyridine:acetylene (1:1) co-crystal forms under specific temperatures and experimental conditions; however, this had not yet been demonstrated under Titan-relevant conditions. Our work here demonstrates that the pyridine:acetylene co-crystal is stable from 90 K, Titan’s average surface temperature, up to 180 K under an atmosphere of N2. In particular, the co-crystal forms via liquid-solid interactions within minutes upon mixing of the constituents at 150 K, as evidenced by distinct, new Raman bands and band shifts. XRD results indicate moderate anisotropic thermal expansion (about 0.5% - 1.1%) along the three principal axes between 90-150 K. Additionally, the co-crystal is detectable after being exposed to liquid ethane, implying stability in a residual ethane “wetting” scenario on Titan. These results suggest that the pyridine:acetylene co-crystal could form in specific geologic contexts on Titan that allow for warm environments in which liquid pyridine could persist, and as such, this cryomineral may preserve evidence of impact, cryovolcanism, or subsurface transport in surface materials.
DOI: 10.5281/zenodo.7683192
title: Chemically Transferable Generative Backmapping of Coarse-Grained Proteins

description: Training, test datasets of the paper "Chemically Transferable Generative Backmapping of Coarse-Grained Proteins". The PDB files are downloaded from PED [1] and processed according to the instruction described in our paper [link]. [1] <strong>PED in 2021: a major update of the Protein Ensemble Database for intrinsically disordered proteins</strong> Lazar, T., Martı́nez-Pérez, E., Quaglia, F., Hatos, A., Chemes, L.B., Iserte, J.A., Méndez, N.A., Garrone, N.A., Saldaño, T.E., Marchetti, J., Velez Rueda, A.J., Bernadó, P., Blackledge, M., Cordeiro, T.N., Fagerberg, E., Forman-Kay, J.D., Fornasari, M.S., Gibson, T.J., Gomes, G-N.W., Gradinaru, C.C., Head-Gordon, T., Ringkjøbing Jensen, M., Lemke, E.A., Longhi, S., Marino-Buslje, C., Minervini, G., Mittag, T., Monzon, A.M., Pappu, R.V., Parisi, G., Ricard-Blum, S., Ruff, K.M., Salladini, E., Skepö, M., Svergun, D., Vallet, S.D., Varadi, M., Tompa, P., Tosatto, S.C.E., Piovesan D. (2021) <em>Nucleic Acids Research</em>, Database Issue, <strong>PubMed </strong><em>link</em>, <strong>NAR </strong><em>link</em>
DOI: 10.5281/zenodo.7683191
title: Chemically Transferable Generative Backmapping of Coarse-Grained Proteins

description: Training, test datasets of the paper "Chemically Transferable Generative Backmapping of Coarse-Grained Proteins". The PDB files are downloaded from PED [1] and processed according to the instruction described in our paper [link]. [1] <strong>PED in 2021: a major update of the Protein Ensemble Database for intrinsically disordered proteins</strong> Lazar, T., Martı́nez-Pérez, E., Quaglia, F., Hatos, A., Chemes, L.B., Iserte, J.A., Méndez, N.A., Garrone, N.A., Saldaño, T.E., Marchetti, J., Velez Rueda, A.J., Bernadó, P., Blackledge, M., Cordeiro, T.N., Fagerberg, E., Forman-Kay, J.D., Fornasari, M.S., Gibson, T.J., Gomes, G-N.W., Gradinaru, C.C., Head-Gordon, T., Ringkjøbing Jensen, M., Lemke, E.A., Longhi, S., Marino-Buslje, C., Minervini, G., Mittag, T., Monzon, A.M., Pappu, R.V., Parisi, G., Ricard-Blum, S., Ruff, K.M., Salladini, E., Skepö, M., Svergun, D., Vallet, S.D., Varadi, M., Tompa, P., Tosatto, S.C.E., Piovesan D. (2021) <em>Nucleic Acids Research</em>, Database Issue, <strong>PubMed </strong><em>link</em>, <strong>NAR </strong><em>link</em>
DOI: 10.6084/m9.figshare.22186423
title: Araucaria_Protein_Data.xlsx

description: Data acquired during studies related to "Somatic embryogenesis induction in Araucaria angustifolia using orthotropic and plagiotropic apex: proteomic and morphoanatomical aspects".
DOI: 10.6084/m9.figshare.22186423.v1
title: Araucaria_Protein_Data.xlsx

description: Data acquired during studies related to "Somatic embryogenesis induction in Araucaria angustifolia using orthotropic and plagiotropic apex: proteomic and morphoanatomical aspects".
DOI: 10.5281/zenodo.7634124
title: Resolving conformational rearrangements in DHFR: Supporting Data

description: Supporting data and processing scripts used in our paper describing the conformational dynamics of DHFR. The data include several perturbative X-ray diffraction methods (ligand-, temperature-, and electric-field-based perturbations) and molecular dynamics simulations.
DOI: 10.5281/zenodo.7634123
title: Resolving conformational rearrangements in DHFR: Supporting Data

description: Supporting data and processing scripts used in our paper describing the conformational dynamics of DHFR. The data include several perturbative X-ray diffraction methods (ligand-, temperature-, and electric-field-based perturbations) and molecular dynamics simulations.
DOI: 10.26208/5sge-r820
title: Conditions for inception of relativistic runaway discharges in air

description: Terrestrial gamma-ray flashes are linked to growth of long bidirectional lightning leader system consisting of positive and stepping negative leaders. The spatial extent of streamer zones of a typical lightning leader with tip potential exceeding several tens of megavolts is on the order of 10 to 100 meters. The photoelectric absorption of bremsstrahlung radiation generated by avalanching relativistic runaway electrons occurs efficiently on the same spatial scales. The intense multiplication of these electrons is triggered when the size of the negative leader streamer zone crosses a threshold of approximately 100 meters (for sea-level air pressure conditions) allowing self-replication of these avalanches due to the upstream relativistic electron seeds generated by the photoelectric absorption. The model results also highlight importance of electrode effects in interpretation of X-ray emissions from centimeter to meter long laboratory discharges, in particular, a similar feedback effect produced by generation of runaway electrons from the cathode material.
DOI: 10.6084/m9.figshare.22186411
title: training_summary_table.pkl

description: Strategy model fits during animal training
DOI: 10.6084/m9.figshare.22186411.v1
title: training_summary_table.pkl

description: Strategy model fits during animal training
DOI: 10.25446/oxford.21760667
title: Discrete Choice Experiment Dataset

description: This folder contains the data used for the following paper: "What Do Tanzanian Parents Want from Primary Schools—and What Can Be Done about It?"
DOI: 10.5281/zenodo.7675548
title: GAMERA Global MHD: ideal simulations

description: Grid Agnostic MHD for Extended Research Applications (GAMERA) global terrestrial magnetohydrodynamic simulation outputs at 1 minute resolution Each simulation covers 1 hour. Files contain grid information and MHD variables. Variable names can be read as h5 attributes.
DOI: 10.5281/zenodo.7675547
title: GAMERA Global MHD: ideal simulations

description: Grid Agnostic MHD for Extended Research Applications (GAMERA) global terrestrial magnetohydrodynamic simulation outputs at 1 minute resolution Each simulation covers 1 hour. Files contain grid information and MHD variables. Variable names can be read as h5 attributes.
DOI: 10.25446/oxford.21743342
title: RISE Tanzania Phone Surveys

description: This folder contains the following phone surveys that were conducted by RISE Tanzania team: 1) Parent Phone Survey in 2020 2) Teacher Phone Survey in 2022
DOI: 10.25446/oxford.21743342.v1
title: RISE Tanzania Phone Surveys

description: This folder contains the following phone surveys that were conducted by RISE Tanzania team: 1) Parent Phone Survey in 2020 2) Teacher Phone Survey in 2022
DOI: 10.6084/m9.figshare.22177382
title: Data Set: Density stratification and buoyancy evolution in pyroclastic density currents

description: This dataset includes data collected during laboratory experiments and complementary numerical simulations. Data from the laboratory experiments includes Excel file with particle concentration and particle size distribution data as collected by gravity fed siphons, as well MATLAB files containing raw velocity and associated timeseries data collected by Profiling Acoustic Doppler Velocimeters and Acoustic Doppler Profilers. Data from the simulations includes MATLAB files containing raw velocity, particle concentration, and fluid density data.
DOI: 10.25446/oxford.21737873
title: RISE Tanzania RCT Data

description: This includes all the datasets that were collected as part of the main <em>randomized controlled trial</em> (RCT) by the RISE Tanzania team.
DOI: 10.25446/oxford.21737873.v1
title: RISE Tanzania RCT Data

description: This includes all the datasets that were collected as part of the main <em>randomized controlled trial</em> (RCT) by the RISE Tanzania team.
DOI: 10.5281/zenodo.7683222
title: Anadromous waters fish surveys by the Alaska Department of Fish and Game AKSSF Project 52007

description: Geospatial data containing stream survey information for locations in Southeast Alaska. Surveys focused on identifying the presence of anadromous fish in freshwater streams while collecting ancillary fish habitat data.
DOI: 10.5281/zenodo.7683221
title: Anadromous waters fish surveys by the Alaska Department of Fish and Game AKSSF Project 52007

description: Geospatial data containing stream survey information for locations in Southeast Alaska. Surveys focused on identifying the presence of anadromous fish in freshwater streams while collecting ancillary fish habitat data.
DOI: 10.5281/zenodo.7672195
title: Classification of GTP-dependent K-Ras4B active and inactive conformational states

description: Dataset for the paper: Classification of GTP-dependent K-Ras4B active and inactive conformational states. Cite as: J. Chem. Phys. 158, 000000 (2023); DOI: 10.1063/5.0139181<br> Submitted: 18 December 2022; Accepted: 13 February 2023; Published Online: 13 February 2023. All molecular dynamics and molecular docking data presented, analyzed, and discussed in this paper are available at reasonable<br> requests submitted to the corresponding author. The following data are also available online: (i) file KRas4B_pdbs.zip, a compressed<br> archive including coordinate (.pdb) and structure (.psf) files for KRas-4B WT and D33E proteins, (ii) KRas4B_WT_traj.zip,<br> a compressed archive including trajectory files (.trr) for the WT KRas-4B runs, including 120 "*.trr"-formatted trajectories each corresponding to 40 ns of MD simulation time, and (iii) a sample Python script to generate a free energy plot as shown in Fig. 2.
DOI: 10.5281/zenodo.7672194
title: Classification of GTP-dependent K-Ras4B active and inactive conformational states

description: Dataset for the paper: Classification of GTP-dependent K-Ras4B active and inactive conformational states. Cite as: J. Chem. Phys. 158, 000000 (2023); DOI: 10.1063/5.0139181<br> Submitted: 18 December 2022; Accepted: 13 February 2023; Published Online: 13 February 2023. All molecular dynamics and molecular docking data presented, analyzed, and discussed in this paper are available at reasonable<br> requests submitted to the corresponding author. The following data are also available online: (i) file KRas4B_pdbs.zip, a compressed<br> archive including coordinate (.pdb) and structure (.psf) files for KRas-4B WT and D33E proteins, (ii) KRas4B_WT_traj.zip,<br> a compressed archive including trajectory files (.trr) for the WT KRas-4B runs, including 120 "*.trr"-formatted trajectories each corresponding to 40 ns of MD simulation time, and (iii) a sample Python script to generate a free energy plot as shown in Fig. 2.
DOI: 10.25919/6m4f-zd74
title: RV Investigator Voyage IN2021_E03 End of Voyage (EOV) Archive

description: This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2021_E03, titled "Equipment Trials and Calibrations 2021." The voyage took place between December 1 and December 8, 2021 (AEST), departing from Hobart (TAS) and returning to Hobart. For further information please refer to the voyage documentation links. Instruments used and data collected include: Regular measurements: Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Greenhouse Gas Analysers (Picarro), Condensation Particle Counters (CPC), Disdrometer, Scanning Mobility Particle Sizers (SMPS), Fisheries Echosounder (EK80), Multibeam Echosounder (EM710, EM122), Sub-bottom Profiler (SBP120), GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen Optode, pCO2, Gravimeter, Ozone Sensor, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Starboard and Portside Radiometers, Air Sampler, Ultra Short BaseLine Underwater Positioning System (USBL), Weather Radar. Voyage-specific measurements: Autonomous Surface Vehicle CO2 sensor (ASVCO2), Deep Towed Camera (DTC). The archive for the IN2021_E03 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (DAP, https://data.csiro.au/dap/), providing access to voyage participants and processors of the data collected on the voyage. All voyage documentation is available electronically to MNF support via the local network. Access to voyage documentation for non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.
DOI: 10.3886/e185564
title: Varying the Number of Referees Influences Outcomes in Goal-Based Sports

description: Numerous factors can affect the outcomes of sports matches; the number of referees should not be one of them. Michigan Technological University has been home to broomball matches for over 70 years. Estimating a negative binomial model, we find that varying the number of referees has the potential to render this sport, and other low-scoring, goal-based sports, inconsequential due to the measurable bias in the score count when there are too few referees – a one-referee reduction lowers total scoring by about one goal. We recommend that the number of referees be constant.1 Introduction
DOI: 10.3886/e185564v1
title: Varying the Number of Referees Influences Outcomes in Goal-Based Sports

description: Numerous factors can affect the outcomes of sports matches; the number of referees should not be one of them. Michigan Technological University has been home to broomball matches for over 70 years. Estimating a negative binomial model, we find that varying the number of referees has the potential to render this sport, and other low-scoring, goal-based sports, inconsequential due to the measurable bias in the score count when there are too few referees – a one-referee reduction lowers total scoring by about one goal. We recommend that the number of referees be constant.1 Introduction
DOI: 10.25919/a7q8-wk46
title: RV Investigator Voyage IN2021_V04 End of Voyage (EOV) Archive

description: This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2021_V04, titled "Biodiversity Assessment of Australia’s Indian Ocean Territories (IOT)." The voyage took place from Darwin (NT) to Hobart (TAS) between June 30 and July 29, 2021 (AEST). Piggy-back project: "Exploring the genomics of convergent snout elongations in deep-sea fishes." For further information please refer to the voyage documentation links. Instruments used and data collected include: Regular measurements: Lowered ADCP (LADCP), Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Greenhouse Gas Analysers (Picarro), Cloud Condensation Nuclei counter (CCN), Condensation Particle Counters (CPC), Disdrometer, Radon sensor, Scanning Mobility Particle Sizers (SMPS), CTD, Hydrochemistry, Fisheries Echosounder (EK80), Multibeam Echosounder (EM710, EM122), Sub-bottom Profiler (SBP120), GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen Optode, Infrared Sea Surface Temperature Autonomous Radiometer (ISAR), pCO2, Gravimeter, Multiangle Absorption Photometer (MAAP), Ozone Sensor, Nephelometer, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Starboard and Portside Radiometers, Air Sampler, Ultra Short BaseLine Underwater Positioning System (USBL), Weather Radar, Expendable Bathythermographs (XBTs). Voyage-specific measurements: Deep Towed Camera (DTC), Specimen Images, Beam Trawl, Surface Net, Microbial Samples, Rock Dredge, Sediment Grab. The archive for the IN2021_V04 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (DAP, https://data.csiro.au/dap/), providing access to voyage participants and processors of the data collected on the voyage. All voyage documentation is available electronically to MNF support via the local network. Access to voyage documentation for non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.
DOI: 10.25919/86vt-q508
title: RV Investigator Voyage IN2022_V07 End of Voyage (EOV) Archive

description: This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2022_V07, titled "HALO - Halimeda bioherm Origins, function and fate in the northern Great Barrier Reef." The voyage took place between August 15, 2022 and September 7, 2022 (AEST), departing from Brisbane and returning to Cairns. Piggyback project: Dinoflagellates & broader planktonic assemblage observation For further information please refer to the voyage documentation links. Instruments used and data collected include: Regular measurements: Lowered ADCP (LADCP), Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Greenhouse Gas Analysers (Picarro), Cloud Condensation Nuclei counter (CCN), Condensation Particle Counters (CPC), Disdrometer, Radon sensor, Scanning Mobility Particle Sizers (SMPS), CTD, Hydrochemistry, Fisheries Echosounder (EK60, EK80), Multibeam Echosounder (EM710, EM122, EM2040c), Sub-bottom Profiler (SBP120), GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen Optode, Infrared Sea Surface Temperature Autonomous Radiometer (ISAR), pCO2, Gravimeter, Multiangle Absorption Photometer (MAAP), Ozone Sensor, Nephelometer, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Starboard and Portside Radiometers, Air Sampler, Ultra Short BaseLine Underwater Positioning System (USBL), Video, Weather Radar. Voyage-specific measurements: Vibrocoring system (User Supplied Equipment), Rock dredges, Smith McIntyre Grab, Box corer, Multicorer, Water samples for nutrient analysis, trace and rare earth elements, Sediment short cores, Deck incubators, Giant Piston Coring (GPC) system, Deep Towed Camera (DTC). The archive for the IN2022_V07 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (https://data.csiro.au/), providing access to voyage participants and processors of the data collected on the voyage. All voyage documentation is available electronically to MNF support via the local network. Applications to access voyage documentation by non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.
DOI: 10.5281/zenodo.7680109
title: Intermittent dietary carbohydrate restriction versus calorie restriction on cardiometabolic profiles

description: This study aimed to investigate the effectiveness and compliance with intermittent low carbohydrate diet (ILCD) versus calorie restriction (ICR) among children and youths with cardiometabolic risk (CMR) and to explore the underlying mechanisms. Thirty-four participants aged 9-30 years comorbid with CMR were randomized to receive a self-administered 2-week ILCD (carbohydrate intake ≤50 g/d for 7 nonconsecutive days) or ICR diet (500-600 kcal/d for two consecutive days per week) following the diet instructions. The changes in obesity measures, glycemic and lipid profiles, and gut microbiota composition from baseline to Day 14 were investigated.
DOI: 10.5281/zenodo.7680108
title: Intermittent dietary carbohydrate restriction versus calorie restriction on cardiometabolic profiles

description: This study aimed to investigate the effectiveness and compliance with intermittent low carbohydrate diet (ILCD) versus calorie restriction (ICR) among children and youths with cardiometabolic risk (CMR) and to explore the underlying mechanisms. Thirty-four participants aged 9-30 years comorbid with CMR were randomized to receive a self-administered 2-week ILCD (carbohydrate intake ≤50 g/d for 7 nonconsecutive days) or ICR diet (500-600 kcal/d for two consecutive days per week) following the diet instructions. The changes in obesity measures, glycemic and lipid profiles, and gut microbiota composition from baseline to Day 14 were investigated.