cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gw52sr
title: Occurrence Download

description: A dataset containing 249 records in GBIF matching the query:

SELECT
 GBIF_ISEA3HCode(
 8, 
 decimalLatitude,
 decimalLongitude,
 COALESCE(coordinateUncertaintyInMeters, 1000)
 ) AS geogrid_id,
 CASE 
 WHEN classKey IN ('359') THEN 'Mammals'
 WHEN classKey IN ('212') THEN 'Birds'
 WHEN familyKey IN ('1103', '1104', '494', '495', '1105', '496', '497', '1106', '498', '499', '1107', '537', '538', '1153', '547', '1162', '548', '549', '550', '1163', '1164', '1165', '1166', '1167', '1305', '1067', '1306', '1307', '1308', '1068', '1069', '587', '1310', '588', '589', '1311', '1312', '1313', '590', '708', '890', '774', '889', '773', '772', '888', '765', '879') THEN 'Bony Fish'
 WHEN classKey IN ('131') THEN 'Amphibians'
 WHEN classKey IN ('216') THEN 'Insects'
 WHEN classKey IN ('11418114', '11569602', '11592253', '11493978') THEN 'Reptiles'
 WHEN phylumKey IN ('52') THEN 'Molluscs'
 WHEN classKey IN ('367') THEN 'Arachnids'
 WHEN classKey IN ('220', '196') THEN 'Flowering Plants'
 WHEN classKey IN ('194', '244', '228', '282') THEN 'Gymnosperms'
 WHEN orderKey IN ('392') THEN 'Ferns'
 WHEN phylumKey IN ('35') THEN 'Mosses'
 WHEN phylumKey IN ('95') THEN 'Sac Fungi'
 WHEN phylumKey IN ('34') THEN 'Basidiomycota'
 END AS taxonomic_group,
 COUNT(DISTINCT speciesKey) AS species_count
FROM occurrence
WHERE countryCode = 'AT'
 AND hasCoordinate = TRUE
 AND hasGeospatialIssues = FALSE
 AND coordinateUncertaintyInMeters &lt;= 2000
 AND occurrenceStatus = 'PRESENT'
 AND speciesKey IS NOT NULL
 AND basisOfRecord != 'FOSSIL_SPECIMEN'
 AND taxonRank = 'SPECIES'
 AND (
 classKey IN ('359', '212', '131', '216', '11418114', '11569602', '11592253', '11493978', '367', '220', '196', '194', '244', '228', '282')
 OR familyKey IN ('1103', '1104', '494', '495', '1105', '496', '497', '1106', '498', '499', '1107', '537', '538', '1153', '547', '1162', '548', '549', '550', '1163', '1164', '1165', '1166', '1167', '1305', '1067', '1306', '1307', '1308', '1068', '1069', '587', '1310', '588', '589', '1311', '1312', '1313', '590', '708', '890', '774', '889', '773', '772', '888', '765', '879')
 OR phylumKey IN ('52', '35', '95', '34')
 OR orderKey IN ('392')
 )
GROUP BY geogrid_id, taxonomic_group;


 The dataset's 249 records were derived from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001654-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssxr6j
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ondatra zibethicus",
 "Year 2010-2026"
 ]
}

 The dataset includes 70 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001673-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30883646
title: <b>A seven-year metagenomic genome catalogue of mangrove and mudflat sediments from the Futian Reserve, China</b>

description: Mangrove wetlands are ecologically and biogeochemically important “blue-carbon” ecosystems, yet long-term genomic resources for their microbial communities remain scarce. Here we present a seven-year (2017–2023) metagenomic dataset from the Futian Mangrove National Nature Reserve, China, comprising 65 sediment samples collected from paired habitats (mangrove forest and adjacent mudflat) across multiple depths. Sequencing produced ~5.3 Tbp of data, from which 6,922 metagenome-assembled genomes (MAGs) were reconstructed and dereplicated into 3,404 representative genomes (336 Archaea and 3,068 Bacteria). Quality control ensured that all genomes achieved medium- or high-quality standards, with assembly statistics and read recruitment rates supporting robustness and representativeness. Taxonomic annotation revealed broad phylogenetic diversity spanning 13 archaeal and 69 bacterial phyla, with many lineages lacking formal nomenclature and representing potential novel taxa. All raw sequences, genome assemblies, and detailed metadata have been deposited in public repositories, providing a standardized, time-resolved resource for comparative genomics, microbial ecology, and ecosystem restoration studies in coastal wetlands.<br><br><b>Dataset contents:</b><br><b>Dataset 1. </b>Overview of 65 sediment samples in Futian Mangrove National Nature Reserve in Shenzhen, China<b>Dataset 2. </b>Overview of 6,299 archaeal and bacterial MAGs
DOI: 10.6084/m9.figshare.30883646.v3
title: <b>A seven-year metagenomic genome catalogue of mangrove and mudflat sediments from the Futian Reserve, China</b>

description: Mangrove wetlands are ecologically and biogeochemically important “blue-carbon” ecosystems, yet long-term genomic resources for their microbial communities remain scarce. Here we present a seven-year (2017–2023) metagenomic dataset from the Futian Mangrove National Nature Reserve, China, comprising 65 sediment samples collected from paired habitats (mangrove forest and adjacent mudflat) across multiple depths. Sequencing produced ~5.3 Tbp of data, from which 6,922 metagenome-assembled genomes (MAGs) were reconstructed and dereplicated into 3,404 representative genomes (336 Archaea and 3,068 Bacteria). Quality control ensured that all genomes achieved medium- or high-quality standards, with assembly statistics and read recruitment rates supporting robustness and representativeness. Taxonomic annotation revealed broad phylogenetic diversity spanning 13 archaeal and 69 bacterial phyla, with many lineages lacking formal nomenclature and representing potential novel taxa. All raw sequences, genome assemblies, and detailed metadata have been deposited in public repositories, providing a standardized, time-resolved resource for comparative genomics, microbial ecology, and ecosystem restoration studies in coastal wetlands.<br><br><b>Dataset contents:</b><br><b>Dataset 1. </b>Overview of 65 sediment samples in Futian Mangrove National Nature Reserve in Shenzhen, China<b>Dataset 2. </b>Overview of 6,299 archaeal and bacterial MAGs
DOI: 10.6084/m9.figshare.30883646.v2
title: <b>A seven-year metagenomic genome catalogue of mangrove and mudflat sediments from the Futian Reserve, China</b>

description: Mangrove wetlands are ecologically and biogeochemically important “blue-carbon” ecosystems, yet long-term genomic resources for their microbial communities remain scarce. Here we present a seven-year (2017–2023) metagenomic dataset from the Futian Mangrove National Nature Reserve, China, comprising 65 sediment samples collected from paired habitats (mangrove forest and adjacent mudflat) across multiple depths. Sequencing produced ~5.3 Tbp of data, from which 6,922 metagenome-assembled genomes (MAGs) were reconstructed and dereplicated into 3,404 representative genomes (336 Archaea and 3,068 Bacteria). Quality control ensured that all genomes achieved medium- or high-quality standards, with assembly statistics and read recruitment rates supporting robustness and representativeness. Taxonomic annotation revealed broad phylogenetic diversity spanning 13 archaeal and 69 bacterial phyla, with many lineages lacking formal nomenclature and representing potential novel taxa. All raw sequences, genome assemblies, and detailed metadata have been deposited in public repositories, providing a standardized, time-resolved resource for comparative genomics, microbial ecology, and ecosystem restoration studies in coastal wetlands.<br><br><b>Dataset contents:</b><br><b>Dataset 1. </b>Overview of 65 sediment samples in Futian Mangrove National Nature Reserve in Shenzhen, China<b>Dataset 2. </b>Overview of 6,299 archaeal and bacterial MAGs
DOI: 10.6084/m9.figshare.31323610.v1
title: Unveiling true biodeterioration potential of aerial algae colonizing building materials in a temperate climate zone - part two - algal metabolomics and material properties investigations

description: This dataset contains raw data produced as a result of the scientific project entitled "<i>Unveiling true biodeterioration potential of aerial algae colonizing building materials in a temperate climate zone via integrated morphological, molecular, physiological and metabolomics approach</i>" - part two.These studies investigate two important aspects of the deterioration process of mineral building materials (brick and plaster). (1) The aerial green algal metabolome after their growth for 1 year on brick and plaster under laboratory and environmental conditions, with particular attention to the presence of degradative metabolites; (2) The changes in physical and mechanical properties of brick and plaster as a result of algal biofilm growth.In this research five algal strains: PNK010 - Chloroidium saccharophilum; PNK013 - Klebsormidium nitens; PNK015 - Bracteacoccus minor; PNK021 - Diplosphaera chodatii; PNK040 - Stichoccus bacillaris were grown on plaster substrates (P or T) and brick substrates (B or C) together with the uninoculated control samples (C or Contr) in laboratory conditions (L) and in the environment (E). In files, symbols of the strains are used (PNK...) and the letters indicating substrate type (P/T and B/C) and growing site conditions (L and E).The metabolic section of the project contains following files:1 - UHPLC_MS_Positive Ion Mode.xlsx; this is the set of all metabolites detected using the positive ion mode method in metabolomic analysis in all investigated samples, without any process of dataset cleaning;2 - UHPLC_MS_Negative Ion Mode.xlsx; this is the set of all metabolites detected using the positive ion mode method in metabolomic analysis in all investigated samples, without any process of dataset cleaning;3- Processed metabolic data.xlsx; this set of tables contains list of processed metabolites, the results of the metabolic pathway analyses and results of the enrichemnt analyses. Data were prepared as follows: "Each strain was evaluated against its corresponding control. Metabolites were included if their abundance in at least one strain was more than twofold higher than in the control (FC &gt; 2). This threshold was applied to account for inter-strain variability, as individual strains may produce distinct metabolites; thus, a single marked increase relative to the control was considered biologically relevant. Compounds were excluded only if none of the strains showed elevated levels compared to the control and if their abundance was consistently greater in most control samples. Such signals were interpreted as background derived from the substrate and were omitted from further analysis."The material properties section contains:(files soon will be uploaded)
DOI: 10.6084/m9.figshare.28669766
title: European Southern Observatory - Publication Output 1969 - 1978 According to Annual Reports

description: This dataset comprises journal articles recorded in the official annual reports of the European Southern Observatory ESO. Inclusion is based on ESO’s own publication lists, which distinguish between “staff publications” (produced within the organization) and “publications based on observations made at the ESO Observatory” (authored by external researchers using ESO facilities in Chile).The dataset covers a ten-year period beginning with the onset of documented publication activity in 1969. The delay between ESO’s founding and the appearance of publications reflects the time required to construct and operationalize its scientific instruments.The dataset therefore captures both internal and infrastructure-based external research outputs formally recognized by ESO during its early operational phase.
DOI: 10.6084/m9.figshare.28669766.v1
title: European Southern Observatory - Publication Output 1969 - 1978 According to Annual Reports

description: This dataset comprises journal articles recorded in the official annual reports of the European Southern Observatory ESO. Inclusion is based on ESO’s own publication lists, which distinguish between “staff publications” (produced within the organization) and “publications based on observations made at the ESO Observatory” (authored by external researchers using ESO facilities in Chile).The dataset covers a ten-year period beginning with the onset of documented publication activity in 1969. The delay between ESO’s founding and the appearance of publications reflects the time required to construct and operationalize its scientific instruments.The dataset therefore captures both internal and infrastructure-based external research outputs formally recognized by ESO during its early operational phase.
DOI: 10.15468/dd.fqvjc8
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.15468/dl.rjsepw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Virididentex acromegalus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001675-260226173443078/datasets/export for details.
DOI: 10.5281/zenodo.18799360
title: PSEUDOPANCREATOBILIARY CYSTS IN CHILDREN: CLINICAL COURSE, DIAGNOSIS AND TREATMENT PROBLEMS
DOI: 10.5281/zenodo.18799359
title: PSEUDOPANCREATOBILIARY CYSTS IN CHILDREN: CLINICAL COURSE, DIAGNOSIS AND TREATMENT PROBLEMS
DOI: 10.15468/dl.a2sad4
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza pusilla"
 ]
}

 The dataset includes 92 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001677-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmr9k4
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucostele werdermanniana"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001678-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmxrad
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carassius gibelio"
 ]
}

 The dataset includes 77 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001679-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28683620
title: European Space Agency - Refined Publication Output 1975 - 1984 According to Annual Reports

description: This dataset draws on publication data reported in ESA annual reports beginning in 1975, after ESRO’s integration into ESA, and additionally from the 1984 volume of the ESA Bulletin.A ten-year analytical window was defined to capture early publication activity while limiting distortions from later institutional restructuring. The dataset provides a reconstructed and institutionally anchored record of journal articles associated with ESA during its formative period.
DOI: 10.6084/m9.figshare.28683620.v1
title: European Space Agency - Refined Publication Output 1975 - 1984 According to Annual Reports

description: This dataset draws on publication data reported in ESA annual reports beginning in 1975, after ESRO’s integration into ESA, and additionally from the 1984 volume of the ESA Bulletin.A ten-year analytical window was defined to capture early publication activity while limiting distortions from later institutional restructuring. The dataset provides a reconstructed and institutionally anchored record of journal articles associated with ESA during its formative period.
DOI: 10.15468/dl.4zahr9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Gymnocranius elongatus"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001682-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caxdpp
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepomis gibbosus",
 "Year is 2012"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001683-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31429697
title: High LET protons amplify radiation induced cell cycle delay compared to low LET protons and photons

description: This contains the data for the paper High LET protons amplify radiation induced cell cycle delay compared to low LET protons and photons. Please see the paper for full description including methodology.
DOI: 10.6084/m9.figshare.31429697.v1
title: High LET protons amplify radiation induced cell cycle delay compared to low LET protons and photons

description: This contains the data for the paper High LET protons amplify radiation induced cell cycle delay compared to low LET protons and photons. Please see the paper for full description including methodology.
DOI: 10.6084/m9.figshare.28675478
title: European Molecular Biology Laboratory - Publication Output 1975 - 1984 According to Annual Reports

description: This dataset includes journal articles listed in the official annual reports of the European Molecular Biology Laboratory EMBL. Publications were selected based on organizational recognition, meaning that articles were included if they were reported by EMBL as part of its scientific output—whether authored by EMBL researchers or derived from EMBL-provided research infrastructures.A ten-year period following the formal establishment of EMBL was defined for data collection from 1975 to 1984.
DOI: 10.6084/m9.figshare.28675478.v1
title: European Molecular Biology Laboratory - Publication Output 1975 - 1984 According to Annual Reports

description: This dataset includes journal articles listed in the official annual reports of the European Molecular Biology Laboratory EMBL. Publications were selected based on organizational recognition, meaning that articles were included if they were reported by EMBL as part of its scientific output—whether authored by EMBL researchers or derived from EMBL-provided research infrastructures.A ten-year period following the formal establishment of EMBL was defined for data collection from 1975 to 1984.
DOI: 10.15468/dl.6zhm6v
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Trachemys scripta, Lepomis gibbosus)",
 "Year is 2018"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001685-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18799325
title: Data observation related to AI preference
title: observation data
DOI: 10.5281/zenodo.18799326
title: Data observation related to AI preference
title: observation data
DOI: 10.15468/dl.xyuqnx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza rustica"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001686-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he3w8t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Hispidoberyx ambagiosus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001687-260226173443078/datasets/export for details.
DOI: 10.5281/zenodo.18798088
title: Learning from NBS and NEB Projects. Synthesis of key findings from successful NBS and NEB projects, T1.1. Excel Dataset. The INNATURE project

description: BACKGROUND INFORMATION: This is an Open Access dataset provided by the INNATURE project with a CC BY license and it should be referenced as “Maununaho, K., Alatalo, E., Lukka, J., Pelsmakers, S., 2026. Learning from NBS and NEB Projects. Synthesis of key findings from successful NBS and NEB projects, T1.1. Excel Dataset. The INNATURE project. DOI: 10.5281/zenodo.18798088". This document is part of Deliverable D1.1 and presents key lessons learned from other NBS and NEB projects and research that form the theoretical and evidence-based foundation for the Horizon Europe project INNATURE: Enhancing Biodiversity and Social Inclusion by Transforming Europe’s Living Environments (2025-2029) funded by the European Union. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or REA. Neither the European Union nor the granting authority hold responsible for them.  This document is not yet EC approved. This work is licensed under the Creative Commons Attribution 4.0 International License. View the license at http:// creativecommons.org/licenses/by/4.0/. More information can be found on the purpose of this database and how it was collected and what was learned from it in Deliverable D1.1. on the INNATURE Zendodo community - https://zenodo.org/communities/innaturecollective