cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1430029.v2
title: Bioinformatics notebook for Plot.ly

description: FANTOM5 provides high precision data of thousands of human and mouse samples. The vastness of this data can be overwhelming and operating it locally is challenging. Luckily, there are many tools out there to make our life easier.<br>For creating a small data subset we can work with in this tutorial, I used TET: Fantom 5 Table Extraction tool. I picked a few human samples, mostly brain tissues with a few outliers, like uterus and downloaded a tab-separated file from the website. For more advanced data extraction, it's good to have a look atTET's API. I have picked normalized tpm(tags per million) and annotated data, so we can focus only on processed data for protein coding genes.
DOI: 10.3535/633-apd-zyf
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mmc-kr6-fsr
title: Mya arenaria Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/d82mshf4pf
title: UK acquirers' acquistions from 2000 to 2015

description: In this paper, we examines the impact of financial advisors’ reputation on acquirers’ returns in Merger and Acquisition (M&A) and provides an overview of the deal outcomes. Using a sample of 3,654 acquisitions from 2000 to 2015 in the U.K, the paper finds that advisor’s reputation matters in private acquisitions as tier-one (top-tier) advisors are able to increase bidder’s wealth by about 4%. We find evidence in support of the “diligent advisor” hypothesis. Besides, we find that boutique advisors are able to complete M&A deals faster than other advisors. Moreover, we find that stock’s Coverage and stock’s Beta are strong indicators of bidder’s wealth during U.K acquisitions. The sample of acquisitions is derived from Bloomberg M&A database. Accounting data and stock's price data are gathered from Thomson Reuters DataStream
DOI: 10.3535/3qp-tjl-jq7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tmg-07w-pc2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3420961.v1
title: BTZR001_10.1371:journal.pone.0157682_Source DataSets.xlsx

description: Source DataSets for manuscript: "Quantitative imaging of cholinergic interneurons reveals a distinctive spatial organization and a functional gradient across the mouse striatum" by Miriam Matamales, Jürgen Götz and Jesus Bertran-Gonzalez published in PLOS ONEDOI: 10.1371/journal.pone.0157682<br><br>
DOI: 10.3535/2ws-y87-8zy
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/psa-ap5-abr
title: Lingula Bruguière, 1791

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1571351.v1
title: The C-terminal domains of human neurofibromin and its budding yeast homologs Ira1 and Ira2 regulate the metaphase to anaphase transition

description: The human tumor suppressor neurofibromin contains a cysteine and serine-rich domain/Ras-GTPase activating protein domain (CSRD/RasGAP) and a C-terminal domain (CTD). Domain studies of neurofibromin suggest it has other functions in addition to being a RasGAP, but the mechanisms underlying its tumor suppressor activity are not well understood. The budding yeast <i>Saccharomyces cerevisiae</i> is a good model system for studying neurofibromin function because it possesses Ira1 and Ira2, which are homologous to human neurofibromin in both sequence and function. We found that overexpression of CTD or a neurofibromin CTD-homologous domain (CHD) of Ira1/2 in budding yeast delayed degradation of the securin protein Pds1, whereas overexpression of CSRD/RasGAP did not affect Pds1 degradation. We also found that when CTD or CHD was overexpressed, the number of cells in metaphase was higher than in the control. These results demonstrate that CTD and CHD function in the metaphase to anaphase transition. In addition, Δ<i>ira1</i>Δ<i>ira2</i> cells bypassed mitotic arrest in response to spindle damage, indicating that Ira1 and Ira2 may be involved in the spindle assembly checkpoint (SAC). However, Δ<i>ira1</i>Δ<i>ira2</i>Δ<i>mad2</i> cells are more sensitive to spindle damage than Δ<i>mad2</i> or Δ<i>ira1</i>Δ<i>ira2</i> cells are, suggesting that Ira1/2 and Mad2 function in different pathways. Overexpression of CTD but not CSRD/RasGAP partially rescued the hypersensitivity of Δ<i>ira1</i>Δ<i>ira2</i>Δ<i>mad2</i> cells to microtubule-destabilizing drugs, indicating a role for CTD in the SAC pathway. Taken together, independently of RasGAP activity, the C-terminal domains of neurofibromin, Ira1, and Ira2 regulate the metaphase to anaphase transition in a Mad2-independent fashion.
DOI: 10.17632/mcf3vt7k2c
title: Storage power purchase agreements to enable the deployment of energy storage in Europe. Gabrielli et al.

description: Original, unprocessed data for manuscript: Storage power purchase agreements to enable the deployment of energy storage in Europe.
Authors: Paolo Gabrielli, Philipp Hilsheimer, Giovanni Sansavini
DOI: 10.3535/fne-2vs-b6y
title: gyttja

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j94-rcn-7k5
title: Schist

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28704250
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 1.xlsx
DOI: 10.6084/m9.figshare.28704250.v1
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 1.xlsx
DOI: 10.6084/m9.figshare.6834878.v2
title: An Asynchronous Distributed Expectation Maximization Algorithm for Massive Data: The DEM Algorithm

description: The family of expectation--maximization (EM) algorithms provides a general approach to fitting flexible models for large and complex data. The expectation (E) step of EM-type algorithms is time-consuming in massive data applications because it requires multiple passes through the full data. We address this problem by proposing an asynchronous and distributed generalization of the EM called the distributed EM (DEM). Using DEM, existing EM-type algorithms are easily extended to massive data settings by exploiting the divide-and-conquer technique and widely available computing power, such as grid computing. The DEM algorithm reserves two groups of computing processes called <i>workers</i> and <i>managers</i> for performing the E step and the maximization step (M step), respectively. The samples are randomly partitioned into a large number of disjoint subsets and are stored on the worker processes. The E step of DEM algorithm is performed in parallel on all the workers, and every worker communicates its results to the managers at the end of local E step. The managers perform the M step after they have received results from a γ-fraction of the workers, where γ is a fixed constant in (0, 1]. The sequence of parameter estimates generated by the DEM algorithm retains the attractive properties of EM: convergence of the sequence of parameter estimates to a local mode and linear global rate of convergence. Across diverse simulations focused on linear mixed-effects models, the DEM algorithm is significantly faster than competing EM-type algorithms while having a similar accuracy. The DEM algorithm maintains its superior empirical performance on a movie ratings database consisting of 10 million ratings. Supplementary material for this article is available online.
DOI: 10.3535/1l3-yzp-293
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4b1-md1-mjn
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11861892.v1
title: DATA

description: All data related to Sherloc paper.All files _LGD, _geonames and _OSM contain the geographic knowledge bases and the preposed embedding for London and NY and all_tweets contain the twitter files.
DOI: 10.6084/m9.figshare.27242433.v1
title: Genome annotation of <i>Kibakoganea sinica</i>

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.6084/m9.figshare.28551638.v1
title: Additional file 2 of Preoperative multiclass classification of thymic mass lesions based on radiomics and machine learning

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.6984965.v1
title: RNA-seq of macrophages of amoeboid or mesenchymal migratory phenotype due to specific structure of environment

description: A table listing all the differentially expressed genes detected.
DOI: 10.60893/figshare.jap.28463516.v1
title: Supplement 1

description: Details of the COMSOL simulations
DOI: 10.3535/441-qp4-lxl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r2y-p4z-k73
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28704256
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 3.xlsx
DOI: 10.3535/t85-b4v-s9z
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wzg-bj8-dxq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28704259
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 2.xlsx
DOI: 10.6084/m9.figshare.28704259.v1
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 2.xlsx
DOI: 10.6084/m9.figshare.7750949.v2
title: VERTEX ORDERING OPTIMIZATION

description: We show that ordering vertices of a graph subject to some objective function is a difficult task.
DOI: 10.3535/43h-3br-d53
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b9m-fht-ks7
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tv0-gqq-q5r
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wyr-8dq-6zd
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15106230.v1
title: Florivory_DataBase_PublishedData.xlsx

description: Dataset of records of florivory measurements published in the scientific literature.
DOI: 10.6084/m9.figshare.27993122.v1
title: Raw Data-Learning Experience of students

description: These are the interview data of learning experience from students majored in library and information science.
DOI: 10.6084/m9.figshare.28704265
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 4.xlsx
DOI: 10.6084/m9.figshare.28704265.v1
title: Supplementary Material from Multispecies entanglements and stable isotope signals (δ13C and δ15N) in modern reindeer-herding communities of boreal Northeast Asia

description: Windle et al. Appendix C Supplementary Table 4.xlsx
DOI: 10.3535/tjc-8pq-frw
title: †Eunema Salter, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xqq-hs8-hxf
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11823402.v1
title: Non-target and suspected-target screening for potentially hazardous chemicals in food contact materials: investigation of paper straws

description: A non-target screening strategy was developed for the safety evaluation of potentially hazardous chemicals in paper food contact materials (FCMs). A tentative list of suspect analytes was generated using publicly available FCM substance inventories, the presence of contaminants in paper straws was confirmed by high-resolution Orbitrap mass spectrometry. Data-independent and data-dependent MS and MS/MS results for candidate compounds were processed using a workflow including peak detection by deconvolution, blank subtraction, retention time alignment, formula assignment and fragmentation spectra search against spectral libraries followed by <i>in silico</i> generated spectra annotation. This workflow allowed for the identification of 74 suspect compounds, of which 40 were assigned a high confidence level of detection. A tentative <i>in silico</i> toxicity evaluation for mutagenic and carcinogenic activities was carried out. Using quantitative structure–activity relationship (QSAR) models it was found that two of the detected compounds tested positive for mutagenicity and three for carcinogenicity.
DOI: 10.6084/m9.figshare.5950366.v1
title: PONE-D-17-28414.dta

description: 1753 men and 1781 women participating in the 1982 Pelotas (Brazil) birth cohort study had measurements of anthropometry, body composition, lipids, glucose, blood pressure, and other cardiometabolic traits at age 30 years.
DOI: 10.3535/me5-v8m-vse
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.13145/bacdive101511.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101512.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093556.10fu
title: SH0093556.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101512.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101513.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093557.10fu
title: SH0093557.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101513.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101514.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093558.10fu
title: SH0093558.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101514.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093559.10fu
title: SH0093559.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101515.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101515.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093560.10fu
title: SH0093560.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101516.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101516.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093561.10fu
title: SH0093561.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101517.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101517.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.