cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vh3d6n
title: Occurrence Download

description: A dataset containing 3362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abutilon indicum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 3362 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014714-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7dnjj
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT countrycode AS countryCode, "year" AS y, "month" AS m, "day" AS d, specieskey AS speciesKey, COUNT(*) AS occurrenceCount FROM occurrence WHERE taxonKey = 212 AND "year" = 2015 AND countrycode IS NOT NULL AND specieskey IS NOT NULL AND "year" IS NOT NULL AND "month" IS NOT NULL GROUP BY countrycode, "year", "month", "day", specieskey

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014699-260208012135463/datasets/export for details.
DOI: 10.5281/zenodo.18629592
title: A bioactive chlorophyll-derived yellow phyllobilin from senescent leaves of Carica papaya (Caricaceae) and its potential role in the ethnopharmacological use of withered leaf extracts

description: This data set contains a list of theoretical masses of known phyllobilins [M+H]+, as well as data needed to reproduce the GNPS feature-based molecular networking job: 

http://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=ef2135f9e2d54f97b42e449b9e57bb11
DOI: 10.5281/zenodo.18492582
title: A bioactive chlorophyll-derived yellow phyllobilin from senescent leaves of Carica papaya (Caricaceae) and its potential role in the ethnopharmacological use of withered leaf extracts

description: This data set contains a list of theoretical masses of known phyllobilins [M+H]+, as well as data needed to reproduce the GNPS feature-based molecular networking job: 

http://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=ef2135f9e2d54f97b42e449b9e57bb11
DOI: 10.5281/zenodo.18629524
title: The effects of mitigation patterns on an attack propagation analysis under uncertainty dataset
DOI: 10.5281/zenodo.18629525
title: The effects of mitigation patterns on an attack propagation analysis under uncertainty dataset
DOI: 10.15468/dl.shc3vu
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cypripedium tibeticum"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014715-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f39rap
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellemerea subsorediza",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 121 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014716-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/zdfvu
title: The Effect of Dutch Gender-Neutral Pronouns on Perceived Text Quality: Generic Reference in Employee Guidelines
DOI: 10.15468/dl.nvrczf
title: Occurrence Download

description: A dataset containing 35496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abutilon theophrasti",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 35496 records from 553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014717-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16317849
title: Data from street-level Automatic Weather Stations (AWS) in Freiburg from 2023-01-01 to 2023-12-31 [L1]

description: Converted and hamonized data files from a street-level automatic weather station (AWS) network in Freiburg im Breisgau, Germany, for the period 2023-01-01 to 2023-12-31. The street-level network provides localized weather data in urban context from 42 weather stations and resolves intra-urban and urban-rural differences across the City of Freiburg and adjacent municipalities. Details on the network are documented here:

https://doi.org/10.5281/zenodo.12732551

All stations provide data on air temperature, atmospheric humidiy and precipitation. Selected stations in addition provide data on solar irradiance, wind speed, wind direction, pressure, black globe temperature and lightning. The network was operated throughout the year 2023.

The production comprises [L1] computations and conversion to a common vocabulary, derived from [L0] conversion to a common data structure, in turn derived from [RAW] the original data.
description: COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project

LICENSE URI

Creative Commons Attribution 4.0 International License
DOI: 10.5281/zenodo.16317848
title: Data from street-level Automatic Weather Stations (AWS) in Freiburg from 2023-01-01 to 2023-12-31 [L1]

description: Converted and hamonized data files from a street-level automatic weather station (AWS) network in Freiburg im Breisgau, Germany, for the period 2023-01-01 to 2023-12-31. The street-level network provides localized weather data in urban context from 42 weather stations and resolves intra-urban and urban-rural differences across the City of Freiburg and adjacent municipalities. Details on the network are documented here:

https://doi.org/10.5281/zenodo.12732551

All stations provide data on air temperature, atmospheric humidiy and precipitation. Selected stations in addition provide data on solar irradiance, wind speed, wind direction, pressure, black globe temperature and lightning. The network was operated throughout the year 2023.

The production comprises [L1] computations and conversion to a common vocabulary, derived from [L0] conversion to a common data structure, in turn derived from [RAW] the original data.
description: COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project

LICENSE URI

Creative Commons Attribution 4.0 International License
DOI: 10.15468/dl.dnphuz
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellemerea diamarta",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 64 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014718-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdpcef
title: Occurrence Download

description: A dataset containing 1254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Azolla"
 ]
}

 The dataset includes 1254 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014719-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0r78dgz
title: CIL:1667, Caenorhabditis elegans. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 0 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.6075/j0r78d31
title: CIL:26598, Homo sapiens, cervical epithelium. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: line averaging
Data qualification: Processed
description: HeLa cells stably expressing the BAC-encoded GFP-labeled hPrp8 snRNP and MS2-mRED protein and treated with doxycholine to express the E3 transgene. Shown is the GFP signal. Cells imaged witb a Leica SP5 confocal microscope using a 60x 1.4NA HCX Plan Apo objective lens. From Fig 5C in Huranova et al. 2010 J Cell Biol 191:75-86.
DOI: 10.6075/j0sx6d21
title: CIL:36946, Xenopus laevis, CNS neuron (sensu Vertebrata). In Cell Image Library

description: Specifications of the custom built two-photon microscope, including the laser sources, signal amplification, PMT specifications, and YFP filter sets are described in: 
Ruthazer ES, Li J, Cline HT. 2006. Stabilization of axon branch dynamics by synaptic maturation. J Neurosci 26(13):3594-3603. 

The methods of cell transfection with electroporation can be found here: 
Bestman JE, Ewald RC, Chiu S-L, Cline HT. 2006. In vivo single-cell electroporation for transfer of DNA and macromolecules. Nat Protocols 1(3):1267-1272. 

Further explanation can be found here:
Bestman JE, Cline HT. 2008. The RNA binding protein CPEB regulates dendrite morphogenesis and neuronal circuit assembly in vivo. Proc Natl Acad Sci U S A 105(51):20494-20499.

Bestman JE, Cline HT. 2009. The Relationship between Dendritic Branch Dynamics and CPEB-Labeled RNP Granules Captured in Vivo. Front Neural Circuits 3:10.
description: This is IMAGE #1 (day 1) of a time lapse series contained with in this image group. It shows two neurons from the optic tectum of an albino Xenopus laevis tadpole CNS, stage 47. Autofluorescent pigment cells are visible in the superficial layers of the z-stack. 
 
 The images were acquired daily over 3 days and show dendritic arbor development and morphological plasticity of the dendritic arbor with branch additions and retractions.
 
 The cell was transfected with in vivo electroporation of plasmid DNA encoding eYFP ~24 hours before the first image was acquired. The intact, living tadpole was anesthetized, positioned under a glass coverslip and this image was taken directly through its transparent skin using a custom built two-photon microscope.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: multi-photon microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EYFP
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0cr5s6j
title: CIL:39002, Gallus gallus, commisural neuron, motor neuron. In Cell Image Library

description: B0001902 Neural tube showing axons & Cad-7 staining. Wellcome Images available under the following creative commons usage http://creativecommons.org/licenses/by-nc-nd/2.0/uk/
description: Transverse section through the neural tube of an early stage chick embryo. The brown stain shows the neurofilament in the axons of the commisural neurons (running down the sides of the neural tube) and of the motor neurons projecting from the ventral parts of the tube. The blue stain shows the location of the cadherin 7 mRNA in the neural crest migrating down alongside the neural tube and in an intense band across the centre of the neural tube. Cadherin 7 is a transmembrane protein that affects cell-cell adherance.
description: Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: modes of light microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in adsorption or binding of stain
Processing history: unprocessed raw data
DOI: 10.6075/j0bk1c1s
title: CIL: 53750. In Cell Image Library

description: CMGC family: The human kinome comprises 538 kinases playing essential cellular functions by catalyzing protein phosphorylations. Systematic annotation of subcellular spatial distribution of the kinome greatly facilitates investigation of normal and disease mechanisms. Here, we present Kinome Atlas (KA), an image-based map of the kinome annotated to 10 compartments of the cell. 456 epitope-tagged kinases, representing 85% of the human kinome, were expressed in HeLa cells and imaged by immunofluorescent microscopy under a unified condition. KA revealed kinase family-enriched subcellular localizations, and discovered a collection of new kinase localizations at mitochondria, plasma membrane, extracellular space, and other unique structures. This resource provides the first snapshot of the kinome under a unified condition, and is a key step toward comprehensive understanding of the spatial and temporal dynamics of the kinome in physiological and disease states.
description: Visualization methods: confocal microscopy
description: Kinome Atlas documented representative images for 456 kinases expressed in HeLa cells, and visualized by immunofluorescence staining of the epitope tag. Nuclei were stained with DAPI. Two representative views from confocal microscopy were collected for each kinase. Also, organelle markers were co-stained for some kinases to indicate specific localization.
DOI: 10.6075/j0q52pn7
title: CIL:32090, Homo sapiens, osteocarcenoma. In Cell Image Library

description: Preparation: formaldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: plate reader
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein; distribution of DNA
Visualization methods: EGFP
Processing history: unprocessed raw data
description: This image set is of Transfluor assay where an orphan GPCR (G-protein coupled receptor) is stably integrated into a beta-arrestin GFP (green) expressing U2OS cell line also showing nucleus (red). After one hour incubation with a compound, the cells were quenched with fixative (formaldehyde) and the plate was read on Cellomics ArrayScan HCS Reader using the GPCR Bioapplication. Negative results are a more uniform distribution of GFP throughout the cytoplasm and positive results are a peri-nuclear localization.
Recommended attribution: "We used the SBS Roche Transfluor image set provided by Ilya Ravkin and available from the Broad Bioimage Benchmark Collection (www.broad.mit.edu/bbbc)."
Analysis of the data set can be downloaded from http://www.broadinstitute.org/bbbc/sbs_roche_transfluor.html
description: The images constitute one row of a 348 well plate. The dose curve consists of 11 dose points and one control. Each concentration is duplicated in adjacent wells. Each well has three fields.
DOI: 10.6075/j09g5kft
title: CIL:50304, Mustela putorius, alveolar type II cell. In Cell Image Library

description: Age: young adult
Organ: mid ventral right lobe lung
Tissue: mid ventral right lobe lung
Voltage: 60kv
Stain 1: 1% somium tetroxide
Stain 2: lead citrate and uranyl acetate
Embed: EPON 812
Section: 50-100
description: Preparation: Modified Karnovskys
Item type: pseudocolored transmission electron micrograph
Imaging mode: transmission electron microscopy (TEM)
description: Transmission electron micrograph of a ferret alveolar type II cell has rough endoplasmic reticulum, RER, lamellar bodies, LB, cytoplasm, nucleus, mitochondria, M, basement membrane, grey line, telomerase indicated with DNA icon and oval, alveolar space, white.
DOI: 10.6075/j09c6wsc
title: CIL:37376, damselfly, flight muscle cell. In Cell Image Library

description: Longitudinal and cross sections showing ribbon like myofibrils regularly alternating with layers of mitochondria and SR/T tubules. Dyads are located in a grove of the mitochondrial surface. Negatives aere scanned on nikon 8000 at 4000dpi/6.3 micron scan step size, then reduced in size 4X for upload, for an effective pixel size of 25 micron.
 
 Technical details:
 Heads and tail removed, thorax bisected and immersed in 3% glutaraldehyde buffered in 0.1 M cacodylate buffer (pH7.2). Stored at 4C for several days. Muscle dissected out. Rinsed 3Xin buffer, postfixed in 2% PsO4 in buffer, for 1.5 hrs; rinsed 3 times in water, en-block stained in saturated aqueous uranyl acetate, embedded in Spurr. Thin sections stained in uranyl acetate and lead and examined in a Philips 410 Microscope.
 
 Reference for the image:
Loesser, K.E., Castellani, L. and Franzini-Armstrong, C. Disposition of junctional feet in muscles of invertebrates. J. Muscle Research Cell Motility 13:161-173, 199
description: Preparation: glutaraldehyde fixed tissue; tissue in epoxy resin embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; lead salt
Processing history: digitized negative film
Data qualification: Raw;spatialmeasurements
DOI: 10.6075/j03x858c
title: CIL:48808, Mus musculus, MC57-Cerulean. In Cell Image Library

description: Mice were euthanized and tumors were freshly explanted. 1-2 mm thick sections were cut at different depths and kept in PBS during the imaging session. Fluorescent confocal microscopy was done using a Leica SP5 II TCS tandem scanner 2-photon spectral confocal microscope with XY motorized stage, using a 25X/NA 0.95 water lens from Leica.
description: Item type: confocal microscopy
description: To determine the origin (local vs. circulating) of tumor associated fibroblasts, a parabiotic pair of mice was created where only one mouse expressed EGFP under the control of the type I collagen alpha-1 promoter (COL-EGFP), and the other mouse expressed DsRed ubiquitously. On each mouse of the parabiotic pair, MC38-Cerulean cancer cells were injected on the distal flank. This folder contains images from the tumor grown in the COL-EGFP mouse, freshly explanted and analyzed ex vivo. The blue channel shows cancer cells, the red channel shows DsRed cells, the green channel shows COL-EGFP+ fibroblasts.Image name: 120513 Parabiot Rag MC57 COLEGFP tumor flank.lif - 3Project: 20389
DOI: 10.6075/j02f7nj7
title: CIL:35814, Saccharomyces cerevisiae. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy; phase contrast microscopy
Parameter imaged: fluorescence emission; elastic scattering of photons
Source of contrast: distribution of a specific protein; differences in amount of elastic light scattering
Visualization methods: EGFP; visualization of contiguous regions
description: Time-lapse images were collected on a DeltaVision system (Olympus IX71) with 60x/1.42 NA objective at 5 minute intervals. Please see the microscopy section in the referenced manuscript for details for image analysis.
description: A time lapse experiment of Saccharomyces cerevisiae expressing GFP-tagged MCM1. 
 
 MCM1 is a transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes
 
These phase,gfp images are part of an image group that ranges from CIL:35880-35899. Note that there are additional groups showing time series of other cell cycle regulation proteins by the same authors in the Library.