cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2fymh4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.2112 -0.773,8.9648 -2.2147,8.9648 1.4824,8.8631 1.3007,8.8278 -0.0747,8.2974 -0.3332,8.2112 -0.773))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013108-250525065834625/datasets/export for details.
DOI: 10.17028/rd.lboro.26871157.v1
title: SPSS processed data set of Procrastination survey data

description: This SPPS document has been processed from an Excel spreadsheet questionnaire about the frequency, form of procrastination, and influences on behaviour when trying to undertake stages of a design process that was completed by 146 students and 9 staff within a UK design and creative arts school.
DOI: 10.17632/t378yy6fkh
title: Costs of Sovereign Debt Crises: Restructuring Strategies and Bank Intermediation

description: This replication package includes all the necessary files to replicate the results in the article "Costs of Sovereign Debt Crises: Restructuring Strategies and Bank Intermediation," Journal of International Economics. It includes data and Stata do files to reproduce the figures and tables in the main text and Online Appendix. The Online Appendix of the article is also included in this repository.
DOI: 10.6084/m9.figshare.23939538.v1
title: STR.rds

description: Stromal single-cell atlas of cigarette smoking lung. Seurat obj.
DOI: 10.17632/bkh8wtgmkg
title: Data for: Running a Confirmatory Factor Analysis in R: a step-by-step tutorial

description: Supplementary files for the "Running a Confirmatory Factor Analysis in R: a step-by-step tutorial" consist of an R script and data needed to run the analysis.
DOI: 10.17632/r7szjyfh9s
title: TSPAN4 paper related original data of gels and blots

description: Original data of gels and blots for the manuscript "TSPAN4 Influences glioblastoma progression through regulating EGFR stability"
DOI: 10.6084/m9.figshare.22197139.v1
title: SD_FIG1.xlsx

description: Wearable ultrasound for deep-tissue modulus mapping.
DOI: 10.6084/m9.figshare.28142672.v1
title: cl.map

description: date
DOI: 10.6084/m9.figshare.6715517.v1
title: Supplementary Material for: Temporal and Vertical Variation in Microbial Community Composition in Response to Physicochemical Characteristics in a Water Column of Highly Eutrophied Jinhae Bay, South Korea

description: Microbial communities play an essential role in marine biogeochemical cycles. Physical and biogeochemical changes in Jinhae Bay, the most anthropogenically eutrophied bay on the coasts of South Korea, are well described, but less is known about the associated changes in microbial communities. Temporal and vertical variation in microbial communities at three depths (surface, middle, and bottom) at seven time points (June to December) at the J1 sampling site were investigated on the MiSeq platform based on the 16S rRNA gene. Overall, the microbial community was dominated by Proteobacteria, Cyanobacteria, and Bacteroidetes from June to November, whereas Firmicutes were dominant in December, especially in the middle and bottom layers. The results indicate that the microbial community composition strongly varied with temporal changes in the physicochemical water properties. Moreover, the community composition differed markedly between the surface and middle layers and the bottom layer in the summer, when the water column was strongly stratified and bottom water hypoxia developed. A redundancy analysis suggested a significant correlation between physicochemical variables (i.e., temperature, salinity, and oxygen concentration) and microbial community composition. This study indicates that temporal changes in water conditions and eutrophication-induced hypoxia effectively shape the structure of the microbial community.
DOI: 10.6084/m9.figshare.1004612.v1
title: Spectra evolution during coating

description: This zip contains a series of spectra recorded from an fibre optic (Fibercore PS750) with a 97um LPG of length 35mm, using an Ocean Optics S2000 spectrophotometer). Each spectra was taken after a simple Langmuir Blodgett layer of calix[4]resorcinarene C11 was applied. The first file (0) has no coating and contistutes bare fibre. This data is refrenced in our companion paper " Long period grating based toluene sensor for use with water contamination"
DOI: 10.6084/m9.figshare.19875217.v1
title: Anxiety Dataset 2022

description: Nineteen volunteers (14 males and 5 females; age range: 18--56 years) from different cultural backgrounds participated in the data collection experiment. These participants were all students recruited from Simon Fraser University, Canada. The experiment was set up to induce stress in an alternating manner: positive video (nonstress induction) followed by negative video (stress induction). 
<br>
Metadata can be downloaded from here:
https://github.com/Elgendi/Anxiety-Dataset-MetaData-2022
DOI: 10.6084/m9.figshare.7687823.v2
title: LSR_data abstraction form_20190129.xlsx

description: This is a pilot-tested standardized data extraction form with detailed instructions.
DOI: 10.6084/m9.figshare.22776362.v4
title: Data files from " Modulation of deep neural circuits with sonogenetics"

description: Data files from " Modulation of deep neural circuits with sonogenetics " Xian et al 2023
DOI: 10.6084/m9.figshare.8787119.v1
title: Data for "The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model"

description: Data accompanying manuscript "The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model" submitted to PLOS Computational model in July 2019 by Tommy Heck<br>The set contains data on:- smoothed particle hydrodynamics fibrillar ECM model validation- model parameter study- study on optimal number of simultaneous protrusions
DOI: 10.17632/9t76sxgm5f
title: Studying household energy consumption: 19 essential spatial data and their estimated impacts

description: Household energy consumption (HEC) can be studied through five types of data: (1) energy demand, (2) socioeconomic properties, (3) building characteristics, (4) meteorological measurements, and (5) land cover. This database includes 19 spatial determinants of the five types of Dutch residential neighbourhoods (Wijk) in 2018 and their estimated impact on HEC, developing a geographically weighted regression model.
DOI: 10.17632/g5mww5k8mj
title: CFPJJ—Fractional parentage coefficients for equivalent electrons in jj-coupling

description: Title of program: CFPJJ - CFP IN JJ-COUPLING Catalogue Id: ACRI_v1_0 Nature of problem This program calculates the coefficients of fractional parentage in jj- coupling. CORRECTION SUMMARY: Vol:Year:Page 14:1978:311 "000A CORRECTION 08/05/77" "CFPJJ: fractional parentage coefficients for equivalent electrons in jj-coupling. (C.P.C. 4(1972)377)." I.P. Grant Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ACRI_v1_0; CFPJJ - CFP IN JJ-COUPLING; 10.1016/0010-4655(72)90100-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/ppmh5j6yfp
title: Electronic Cigarettes and Cutaneous Wound Healing: A Systematic Review, Mendeley Supplements

description: Mendeley Supplement 1- Search Strategies
Mendeley Supplement 2- PRISMA 2020 Flow Diagram
Mendeley Supplement 3- Summary of Case Reports
Mendeley Supplement 4- Summary of Animal Studies
Mendeley Supplement 5- Summary of Physiological Studies
DOI: 10.6084/m9.figshare.12570266.v1
title: Street network of Chicago

description: Directed street network of Chicago.First line contains network metadata.Following 79824 lines contain geographical coordinates of nodes, with line i containing coordinates of node with id i-2.Remaining lines contain information about the edges, with each line containing id of predecessor, id of successor, length of the edge in meters, and type of the street.
DOI: 10.6084/m9.figshare.19179137.v1
title: Sjaponica

description: The genome data of S. japonica
DOI: 10.6084/m9.figshare.19729525.v1
title: Re-annotation of the mulberry genome

description: Since the annotation information of the gene structure of cultivated mulberry (<em>Morus alba</em> ) could not be retrieved, we re-annotated the gene structure based on the genome of cultivated mulberry trees in order to conduct this study.
DOI: 10.6084/m9.figshare.23567442.v1
title: Telecom_churn_dataset

description: This is a dataset of telecom churn
DOI: 10.6084/m9.figshare.24586023.v1
title: Additional file 1 of Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines

description: Additional file 1: Table S1. Viromic statistics and viral concentrations of four samples. Table S2. Comparison in virus recovery from short- and long-read assemblies. Table S3. Size summary of vOTUs from CB17. The two assembly types (i.e., short+long-read assembly and short-read-only assesmbly) had identical sequencing depth, as described in Table S2. Table S4. Size summary of vOTUs from CB18. The two assembly types (i.e., short+long-read assembly and short-read-only assesmbly) had identical sequencing depth, as described in Table S2. Table S5. Taxonomic assignments and viral cluster summary. Viruses from this study, the NCBI RefSeq database, and 250 environmental metagenomes were included for clustering analysis. The environmental metagenomes included samples from below ecosystems: global oceans (GOV2 dataset), deep ocean water, deep ocean sediment, surfacer layer (top 1 meter) of permafrost (IsoGenie), soil, air, glacier cryoconite, glacier ice core, and lake water. Table S6. Viral cluster summary of the two vOTUs encoding fatty acid desaturase (FAD) genes. The two vOTUs are vOTU105_CB18_230153 and vOTU43_CB18_222366. Viral contigs that connected to above two vOTUs from Figure S4 and Table S5 were used for network analysis in this Table. Table S7. Putative gene annotations of the 11,088 vOTUs from this study. Genes were annotated by comparing them to three databases PFAM, KEGG, and Uniref using DRAMv. Table S8. Gene annotation and phage gene identification of the vOTU vOTU4_CB17_43158 encoding the AMG espG.The methods used for gene annotation and phage gene identification are described in the legend of Fig. 5. Table S9. Tests for selection pressure of epsG gene using site and free-ratio models. Table S10. Summay and annotations of all brine viral genes under positive selection. The 23 putative phage tail fiber genes were highlighted in grey (i.e., Rows 3-25). Table S11. Scripts used for quality control of the short-read viromes based on DOE Joint Genome Institute's standards pipeline (Clum et al., 2021).
DOI: 10.6084/m9.figshare.28204751.v1
title: Datasets for "Male-dependent resistance to <i>Spiroplasma</i>-induced cytoplasmic incompatibility"

description: These datasets were generated for the study titled “Male-dependent resistance to <i>Spiroplasma</i>-induced cytoplasmic incompatibility”, investigating the relatedness of <i>Spiroplasma </i>(named <i>sDis</i>) in the <i>Lariophagus distinguendus </i>species complex, the occurrence of cytoplasmic incompatibility (CI) in selected <i>L. distinguendus</i> strains and the effect of host strain and host sex on CI induction.The files contain the data for the crossing experiments conducted with different combinations of <i>Spiroplasma</i>-infected and uninfected males and females from different strains and species belonging to the <i>L. distinguendus</i> species complex to test for the presence of <i>Spiroplasma</i>-induced CI indicated by the reduction or absence of female offspring. Each file corresponds to one set of crossing experiments and gives the origin host strain and the <i>Spiroplasma</i> infection status for each crossing partner, as well as IDs for either individual crossing partners or crossing combinations and additional information used for statistical analyses, where required.
DOI: 10.17632/phchsd6g87
title: Tensile Testing of Additive Manufactured ASTM Specimens with Embedded Defects

description: This data article presents tensile testing data of ASTM D638 size specimens with embedded internal geometrical features printed using PLA in a Fused Filament Fabrication (FFF) 3D printing process.
DOI: 10.6084/m9.figshare.24922941.v1
title: The single-cell RNA-seq data generated in the study <b><i>Strategies for Arterial Grafts Optimization at Single Cell Level</i></b>

description: This dataset collection contains the human single-cell RNA-seq data generated in the study <b><i>Strategies for Arterial Grafts Optimization at Single Cell Level</i></b>.Coronary artery disease (CAD) is the leading cause of myocardial infarction and heart failure. Coronary artery bypass grafting (CABG) is the most effective way to treat CAD, especially in some high-risk conditions, such as severe lesions or in combination with other heart diseases. Common arterial grafts used in coronary artery bypass grafting include internal thoracic artery (ITA), radial artery (RA), and right gastroepiploic artery (RGA), among which ITA has the best clinical outcomes. Here, we performed single-cell RNA sequencing (scRNA-seq) to find optimization strategies for RA and RGA by using ITA as a reference.For each of the nine samples (RA1, RA2, RA3, ITA1, ITA2, ITA3, RGA1, RGA2, RGA3) collected in this study, the CellRanger output as gene expression matrices (both raw_feature_bc_matrix and filtered_feature_bc_matrix) are provided in both h5 format and mtx.gz format. CellRanger (version 5.0.1, 10x genomics) was used with default parameters to map all the samples’ scRNAseq data to the human reference genome (GRCh38) provided by 10x Genomics.
DOI: 10.6084/m9.figshare.28062047.v1
title: Supplementary Material for: Circ_0008927 promotes the progression of endometriosis via miR-608/PROM2 mediated ferroptosis

description: Objective: Abnormal expression of circular RNA (circRNA) leads to the occurrence and development of endometriosis (EM), but its underlying mechanisms are largely unknown. Methods: Abnormally expressed circRNAs were screened in EM and normal tissues. A series of gain-of-function or loss-of-function experiments were conducted to evaluate the biological behavior of circ_0008927 in EM cells. The role of circ_0008927 in the proliferation, migration, and invasion of EM cells was investigated. The downstream mechanisms of circ_0008927 were studied through bioinformatics analysis and RNA sequencing, and this was confirmed through RNA immunoprecipitation and dual-luciferase reporter assays. Results: circ_0008927 is highly expressed in EM tissues. From a biological perspective, silencing circ_0008927 can inhibit the proliferation, migration, and invasion of EMS cells in vitro. Mechanistically, circ_0008927 can interact with miR-608 through a competitive endogenous RNA mechanism, upregulating prominin2(PROM2) and inhibiting ferroptosis in EM, thereby exacerbating the progression of EM. Conclusions: Our research results not only reveal the key role of circ_0008927 in regulating the progression of EM but also advocate for attenuating the circ_0008927/miR-608/PROM2 regulatory axis to combat EM.
DOI: 10.6084/m9.figshare.28595483.v1
title: Clinical, hormonal and metabolic characteristics of PCOS and control groups.xlsx

description: Normal serum and PCOS serum samples were collected from 50 patients from January 2023 to July 2023. The levels of gonadal hormones, TSH, AMH and OGN were measured. The inclusion criteria for PCOS were women aged 20-35 years with a body mass index (BMI) of 17-35 kg / m2. The women in the healthy control group had regular menstrual cycles, no signs of hyperthyroidism and other hyperthyroidism, and no history of infertility. Women with diabetes mellitus, cardiovascular disease, hypertension, current pregnancy and a history of disease were excluded from the study. Women with PCOS are diagnosed according to the revised Rotterdam criteria, requiring two of the following three manifestations: (1) low / no ovulation, (2) clinical and / or biochemical hyperandrogenemia, and (3) ultrasound diagnosis of polycystic ovary.
DOI: 10.6084/m9.figshare.5644369.v1
title: BIOGAS PRODUCTION FROM DAIRY CATTLE MANURE, UNDER ORGANIC AND CONVENTIONAL PRODUCTION SYSTEMS

description: ABSTRACT The purpose of this study was to evaluate the production of biogas, as well as the biogas production potential resulting from the anaerobic biodigestion of dairy cattle manure under organic (CMOS) and conventional (CMCS) production system. Also, the concentration of thermotolerant coliforms was evaluated after the biodigestion process. Therefore, bench biodigesters prototypes were supplied with CMOS and CMCS for 30 weeks. The experimental design was completely randomized with four repetitions for each treatment. Analysis of total solids (TS), volatile solids (VS), biogas production potential, most probable number (MPN) of thermotolerant coliforms were made. The cumulative biogas production was 6.18 L and 11.15 L, when using the CMOS and CMCS, respectively. Average biogas production potential of CMCS were 0.2; 2.6 and 2.9 L kg-1 substrate, ST and SV added, respectively and for CMOS 0.1; 1.4 and 1.9 L kg-1substrate, ST and SV added, respectively. After the anaerobic biodigestion process of CMOS and CMCS, it was observed that the concentrations of thermotolerant coliforms were well below than the limit established by law.
DOI: 10.17632/js4ts9s28n
title: Data for: Use of specific combinations of the Triphala plant component extracts to potentiate the inhibition of gastrointestinal bacterial growth

description: Supplementary data
DOI: 10.6084/m9.figshare.1054788.v2
title: Analysis on Tank Truck Accidents Involved in Road Hazardous Materials Transportation in China

description: <b>Objective:</b> Due to the sheer size and capacity of the tanker and the properties of cargo transported in the tank, hazmat tanker accidents are more disastrous than other types of vehicle accidents. The aim of this study was to provide a current survey on the situation of accidents involving tankers transporting hazardous materials in China.<b>Methods:</b> Detailed descriptions of 708 tanker accidents associated with hazmat transportation in China from 2004 to 2011 were analyzed to identify causes, location, types, time of occurrence, hazard class for materials involved, consequences, and the corresponding probability.<b>Results:</b> Hazmat tanker accidents mainly occurred in eastern (38.1%) and southwest China (12.3%). The most frequent hazmat tanker accidents involved classes 2, 3, and 8. The predominant accident types were rollover (29.10%), run-off-the-road (16.67%), and rear-end collisions (13.28%), with a high likelihood of a large spill occurring. About 55.93% of the accidents occurred on freeways and class 1 roads, with the spill percentage reaching 75.00% and the proportion of spills that occurred in the total accidents amounting to 77.82%, of which 61.72% are considered large spills. The month with the highest accident probability was July (12.29%), and most crashes occurred during the early morning (4:00–6:00 a.m.) and midday (10:00 a.m.–12:00 p.m.) hours, 19.63% versus 16.10%. Human-related errors (73.8%) and vehicle-related defects (19.6%) were the primary reasons for hazmat tanker crashes. The most common outcomes of a hazmat tanker accident was a spill without further events (55.51%), followed by a release with fire (7.77%), and release with an explosion (2.54%).<b>Conclusions:</b> The safety situation of China's hazmat tanker transportation is grim. Such accidents not only have high spill percentages and consistently large spills but they can also cause serious consequences, such as fires and explosions. Improving the training of drivers and the quality of vehicles, deploying roll stability aids, enhancing vehicle inspection and maintenance, and developing good delivery schedules may all be considered effective measures for mitigating hazmat tanker accidents, especially severe crashes.
DOI: 10.6084/m9.figshare.23540139.v3
title: <strong>Should sons breed independently or help? Local relatedness matters</strong>

description: Data used in Li et al. Should sons breed independently or help? Local relatedness matters. Journal of Animal Ecology.
DOI: 10.6084/m9.figshare.27024340.v5
title: Data from "Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering"

description: Dataset for paper "Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering"
DOI: 10.6084/m9.figshare.28323779.v1
title: rawdata Bienve study

description: DAta extracted from a larger study, and then cleanded to keep only data from horses under general anaesthesia, recovered from anaesthesia.
DOI: 10.17632/9xkhgts2s6
title: Curated Dataset for COVID-19 Posterior-Anterior Chest Radiography Images (X-Rays).

description: This is a combined curated dataset of COVID-19 Chest X-ray images obtained by collating 15 publically available datasets as listed under the references section. The present dataset contains 1281 COVID-19 X-Rays, 3270 Normal X-Rays, 1656 viral-pneumonia X-Rays, and 3001 bacterial-pneumonia X-Rays.
This dataset is developed as a part of the following research publication.

"A deep-learning based multimodal system for Covid-19 diagnosis using breathing sounds and chest X-ray images" 
https://doi.org/10.1016/j.asoc.2021.107522

The collected datasets—as cited by this dataset—are combined to form an integrated repository. This integrated repository contains a total of 4558 COVID-19 X-Rays, 5403 Normal X-Rays, 4497 Viral pneumonia X-Rays, and 5768 bacterial pneumonia X-Rays. Out of which 1379 COVID-19 X-Rays, 1476 normal X-Rays, 2690 viral pneumonia X-Rays, and 2588 bacterial pneumonia X-Rays are found to be duplicates—based on the image similarities—and thus are removed. Inception V3 architecture is used to obtain the image embeddings, which is followed by the use of unsupervised learning algorithms based on cosine similarity distances. These distances are clustered and then visualized to find different categories of image defects which are listed below:—

1.Noise
2.Pixelated 
3.Compressed
4.Medical Implants
5.Washed out image
6.Side View
7.CT (sliced) image
8.Aspect Ratio distortion / Cropped / Zoomed 
9.Rotated Images
10.Images with annotations

These clusters of defective images are removed during the curation process and a refined dataset is obtained which is available for download.