cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3980400.v1
title: data.rar

description: <b>Entomological data and Trap Position</b>: Mosquitoes were collected during the dry seasons in 2012 (September 3–November 25; 12 weeks), 2013 (September 2–November 24; 12 weeks), and 2014 (September 1–October 26; 8 weeks) from eight different sites that varied by year. Sites were selected from field expertise and followed a longitudinal transect that maximized heterogeneity of the landscape and lifestyle characteristics of the population. Trapping sessions were conducted on two non-consecutive nights per week, between 6:00 pm and 8:00 am, by using Mosquito Magnet® traps (Woodstream Corporation, Lititz, PA) baited with octenol (MMoct). Such traps have previously been proven useful to monitor the spatial and temporal abundance of malaria vectors in French Guiana. Mosquitoes were stored at -20 °C until counting and morphological identification. To achieve a weekly cartographic output and to smooth variation between collection nights, the two bi-weekly observations were averaged to approximate a daily number of specimens and then multiplied by seven to approximate a weekly number of specimens. In all, 165 weekly approximated <i>An. darlingi </i>density records across the eight study sites was finally available for analyses, which was slightly less than our expected maximum of 184, owing to the mechanical failure of traps. Weekly <i>An. darlingi</i> densities were allocated to three classes following the tercile method: “1" "Low densities” (first tercile), "2" “Medium densities” (second tercile), and "3" “High densities” (third tercile). Since our activities were not conducted in a protected area (not a national park or a regional nature reserve), no specific permission was required, and field studies did not involve endangered or protected species.<br><b>Land Cover Map: </b>A SPOT-5 image acquired on October 14, 2012, with four color channels (red, green, near-infra-red, and middle infrared) was selected to characterize the landscape of the study area. One image was sufficient to cover the eight trapping sites. However, the presence of clouds required the posterior use of a second SPOT-5 image (July 22, 2013) in order to fill the missing data (5% of the total study area) and obtain a spatially complete product. A land cover map of the study area was produced based on field observations and a supervised training approach with maximum likelihood classification. The classification included five land cover types identified as “built, roads, and bare soils”; “low vegetation”; “forest”; “very dense forest”; and “water.” A 7 × 7 pixel mode filter (i.e., each pixel value being replaced by its most common neighbor in a 7 × 7 cell moving window) was applied to the classification to reduce noise. BD-Topo® 2012 (IGN, the French National Institute of Geographic and Forest Information) was used to separate the “built” surfaces and “roads and bare soil” surfaces, resulting in a six-class land cover map.<br><b>Meteorological Data: </b>Daily meteorological records were obtained from the Meteo-France weather station located in the city center of Saint-Georges de l’Oyapock.<br> <br>
DOI: 10.3535/4kp-d7a-3xz
title: Ilmenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/79f-tad-prz
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15044337.v1
title: Assimilation of Satellite Active Fires Data - Data and Code

description: Data and Matlab functions to accompany thesis by James Haley.<br>
DOI: 10.3535/9fs-8p0-fgg
title: Ilmenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3554070.v1
title: Appendix A. Methods for analyzing community turnover at increasing phylogenetic depths.

description: Methods for analyzing community turnover at increasing phylogenetic depths.
DOI: 10.6084/m9.figshare.7205897.v1
title: Data set for PlosONE

description: Data set for PlosONE manuscript
DOI: 10.3535/hxa-82y-tap
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sae-pkq-tj8
title: Neoasaphus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.157057.v3
title: Experiment 1: Proportion of participants perceiving test arrays as being larger than reference arrays

description: The first five rows of data indicate the proportion of times participants perceived an unbound test array as being larger than a fixed unbound reference array. The second five rows indicate the proportion of times participants perceived a binding ring array as being larger than a fixed unbound reference array. Each proportion was calculated from 20 trials.
DOI: 10.3535/d9d-dwq-274
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xf9-d5f-0ln
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19754662.v1
title: HDX MS data

description: HDX data
DOI: 10.6084/m9.figshare.c.3855574_d1.v1
title: Additional file 10: Table S7. of The genomic architecture of mastitis resistance in dairy sheep

description: Functional annotation clustering analysis of the genes located in the candidate regions for mastitis resistance. (XLSX 16Â kb)
DOI: 10.3535/tlk-lyc-h8g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xa3-d08-p1p
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4lc-pef-4rh
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12751079.v2
title: forClassification.zip

description: All datasets classified with the ccAF classifier.
DOI: 10.3535/p92-tjy-911
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q2k-wzg-53p
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3wj-gjy-n2j
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g4m-nkq-5cm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1qa-dh0-8fm
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n7r-xws-qed
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/78k-x3r-va4
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/prx-vkh-1vg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.y8tz4h
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Cycas rumphii Miq."
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009843-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5jc-3eg-g6f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rw9-evc-3d2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t2l-lha-vcg
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x73-tzm-ygw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k0t-fwd-4jx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n4g-f51-329
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cd2-eyy-c3p
title: Granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zmv-nhy-kw7
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27905595.v1
title: DATA FOR: Developing a Theoretical Model of University Students' Experiences with Elder Abuse: A Grounded Theory.

description: This is a set of data, referring to 34 interviews, and the NVIVO software was used to process the material for data analysis.
DOI: 10.3535/kx2-fap-3nv
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3e0-5f8-t88
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/adv-7hq-z4b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28595144.v1
title: Data and Supporting Information-Proceedings of the royal society B: biological sciences (Linkage of anthropogenic intensity in up-basins and organic carbon flux in lake sediments during the Anthropocene)

description: Data and Supporting Information-Proceedings of the royal society B: biological sciences (Linkage of anthropogenic intensity in up-basins and organic carbon flux in lake sediments during the Anthropocene)
DOI: 10.3535/3be-33n-3n0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7c4-vfk-8eh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9rz-h1b-4h8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6143945.v9
title: Raw data - Ecotoxicological tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.3535/5l4-6rt-akl
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s8n-38v-n97
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25316437.v1
title: <b>Transcriptome-Wide Expression Landscape And Starch Synthesis Pathway Coexpression Network in Sorghum</b>

description: This study was performed to identify LncRNA, transcript expression, and alternative splicing in sorghum.
DOI: 10.21954/ou.rd.22101905.v1
title: Interview Transcripts: Using and Producing Digital Tools and Resources for Ancient World Research

description: My CHASE-funded PhD in Classical Studies in which these interviews played a crucial role, investigated Linked Ancient World Data usability. The interviews took place between autumn 2018 and spring 2019, with a sample of 16 participants who had completed the survey that formed the previous phase of this study (data available at https://doi.org/10.17613/1291-4r33). The survey was aimed at anyone involved in Ancient World research, with any level of digital expertise. Interview participants were selected to include a range of technical skill levels, while being broadly demographically representative of the survey population. <br> Questions related to participants' experiences of using and producing digital tools and resources in general (including their effectiveness for different research activities), with additional questions for those participants who had knowingly used or produced Linked Data. <br> For the purposes of this study: digital resources are defined as any material that can be consumed in an electronic format, including digitised or born-digital texts, images or artefacts, as well as websites, databases, catalogues, and interactive visualisations; digital tools are defined as software that enables the user to carry out a specific function relating to a digital resource (such tools may be online or installed on the user’s computer); Ancient World research refers to the study of any civilisations existing prior to the end of the Western Roman Empire in 476 AD.
DOI: 10.3535/57v-xr7-wzd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kl5-b7e-sve
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3520586.v1
title: Supplement 1. Matlab code for solving optimization problems and create Fig. 3 in the text.

description: File List consletters.m (MD5: 2f9532ab9ff4f24590bca218e26fa674) consconsletter1.m (MD5: 376470467e5c1959d2f1a153456f4129) makebspareshare9.m (MD5: 16c990f61bb4242241c2b2facc674b4c) profit.m (MD5: 2bc2a751b8a3d2d6f4f5dd7a4906cbaa) Description There are 4 files of MATLAB code which will solve the optimization problems presented in Fig. 3 of the manuscript. “consletters.m” This file contains the code to solve the optimization and calls out the following functions. “consconsletter1.m” is the constraint function that is called for the optimization. “makebspareshare9.m” contains the matrixes of coefficients for the yield density curves used in the optimizations. “profit.m” has the function to be maximized. Key variables: X= yield of each parcel(varies between 0–1) a, g, in, in2 are coeffcients used to estimate the yield density curves e = the minimum number of a given species that meets the minimum species constraint. Obi= total production All code is written and solved using the MATLAB optimization toolbox from MATLAB 2013B. We are unsure if the program will work in earlier or later versions.
DOI: 10.3535/3fj-b49-nd6
title: †Cymbularia Koken, 1896

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fea-tmw-86w
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5f6-xpc-lvh
title: †Sinuites bilobatus (J. De C. Sowerby, 1839)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r23-j50-4wr
title: Amphorichnus papillatus Männil

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26196983.v1
title: ASA responses Supplemental Tables

description: Supplemental Tables for articles: <b>Genomic and cellular responses to aspirin in colonic organoids from African- and European-Americans</b>
DOI: 10.6084/m9.figshare.28139225.v1
title: Supplementary data

description: 文章的补充数据
DOI: 10.6084/m9.figshare.8144519.v3
title: Table S2 Arterial blood gas analysis of rats.docx

description: Arterial blood gas analysis of rats.
DOI: 10.3535/9he-c3t-w0p
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tr1-13s-7rm
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rmd-3pd-qty
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s71-cf2-6gv
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qst-q0z-qgl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zd4-6gf-vy9
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/yf2sxpy8fp
title: Data for: Towards the pan-European bioindication system: assessing and testing updated hydrological indicator values for vascular plants and bryophytes in mires

description: The table version (*.csv file) of the list of hydrological Ellenberg-like Ecological Indicator Values, tolerances and weights at the scale of 1–12 for vascular plants and bryophytes occurring in mires, with the most frequently used synonyms and orthographic variants used in vegetation-plot databases. For downloading the text file versions directly applicable in both the JUICE software (Indicator Values tool; Species Data field) and the R software, visit supplementary material of the original article and the JUICE web pages at https://www.sci.muni.cz/botany/juice/
DOI: 10.3535/80a-bkk-1dx
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mar-mm1-5s3
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28581167.v1
title: A dataset encompasses the average, standard deviation values, and the average spatial correlation coefficient up to 2NN for the predicted oxygen solution energies across the Ti-Zr-Nb-Ta quaternary composition space

description: To analyze the oxygen solubility characteristics across the Ti-Zr-Nb-Ta quaternary composition space, we have varied each element’s composition in increments of 0.05, resulting in 1771 distinct compositions. For each composition, we construct a 6×6×6 supercell and iteratively place oxygen atom at each of all possible 1296 octahedral sites within the supercell. Using our trained ML model, we predict the oxygen solution energies for more than 2 million octahedral sites. The data file encompasses the average, standard deviation values, and the average spatial correlation coefficient up to 2NN for the predicted oxygen solution energies across the 1771 distinct compositions within the entire Ti-Zr-Nb-Ta composition space.
DOI: 10.3535/25t-9b8-wrh
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n6m-8sv-hdv
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24986442.v1
title: Table S5. <i>ARRDC3</i> and <i>NFIA</i> genotypes for two SNPs from the 1203 animals and 46 breeds listed in Table 4.

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.6084/m9.figshare.25304326.v1
title: <b>A cell-free nutrient-supplemented perfusate allows four-day ex vivo metabolic preservation of human kidneys</b>

description: The growing disparity between the demand for transplants and the available donor supply, coupled with an aging donor population and increasing prevalence of chronic diseases, highlights the urgent need for the development of platforms enabling reconditioning, repair, and regeneration of deceased donor organs. This necessitates the ability to preserve metabolically active kidneys ex vivo for days. However, current kidney normothermic machine perfusion (NMP) approaches allow metabolic preservation only for hours. Here we show that human kidneys discarded for transplantation can be preserved in a metabolically active state up to 4 days when perfused with a cell-free perfusate supplemented with TCA cycle intermediates at subnormothermia (25°C). Using spatially resolved isotope tracing we demonstrate preserved metabolic fluxes in the kidney microenvironment up to Day4 of perfusion. Beyond Day4, significant changes were observed in renal cell populations through spatial lipidomics, and increases in injury markers such as LDH, NGAL and oxidized lipids. Finally, we demonstrate that perfused kidneys maintain functional parameters up to Day4. Collectively, these findings provide evidence that this approach enables metabolic and functional preservation of human kidneys over multiple days, establishing a solid foundation for future clinical investigations.The exported and processed datasets are provided here, as well as the data underlying the untargeted lipidomics.
DOI: 10.3535/1ln-9ry-bjj
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9rn-l7k-m4b
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bk5-86c-f2t
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p6t-mdf-k31
title: metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q9e-t78-9n2
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.