cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8dxd5c
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asphodeline liburnica (Scop.) Rchb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 99 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026323-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrcq3m
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 2006-2024"
 ]
}

 The dataset includes 82 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026325-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9aaup
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 2004-2024"
 ]
}

 The dataset includes 89 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026326-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fynwef
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 2007-2024"
 ]
}

 The dataset includes 77 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026330-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hyhjq
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 2005-2024"
 ]
}

 The dataset includes 83 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026328-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gftym3
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 2006-2024"
 ]
}

 The dataset includes 82 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026329-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbczt5
title: Occurrence Download

description: A dataset containing 2985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asphodeline lutea (L.) Rchb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 2985 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026327-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4q99z
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asplenium fissum Kit.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026332-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uw4nw6
title: Occurrence Download

description: A dataset listing the 2124 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Human Observation, Observation)",
 "Continent is South America",
 "Country is Colombia",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Diagnóstico biótico de los predios Bel Rey, Talanqueras Lote 1, La Cascada y El Refugio para las acciones de restauración en cumplimiento del Plan de Compensación Ambiental y Plan de Inversión Forzosa de no menos del 1% del Campo Rubiales, orientadas a la gestión de la biodiversidad y sus servicios ecosistémicos en la cuenca del río Tillavá, Puerto Gaitán, Meta, Caracterización de la vegetación en una zona delimitada en Cumbitara, La Llanada, Policarpa y Los Andes Sotomayor (Nariño), como insumo para la identificación de oportunidades de conservación para la recuperación de los servicios ecosistémicos de bosque seco, Demografía y propagación de palmas andinas con potencial ornamental en Colombia, Distribución vertical de briófitos en un bosque húmedo tropical de la Reserva Forestal Buenavista, Villavicencio-Meta, Registros de plantas epífitas vasculares de la Reserva Natural La Planada - Resguardo Indígena Awá Pialapí Pueblo Viejo, Ricaurte, departamento de Nariño, Colombia, Flora nativa sembrada en el marco de acciones de restauración ecológica en el Santuario de Fauna y Flora Galeras, Caracterización florística de las Sabanas del Yarí en el municipio de La Macarena, Meta, Abundancia, estructura poblacional y registro de producción de frutos de cacay (Caryodendron orinocense) y moriche (Mauritia flexuosa) en el departamento del Guaviare, Estructura del anturio (Anthurium sanguineum) en el Santuario de Flora y Fauna Galeras en 2016 a 2017)",
 "GadmGid is one of (COL.17_2, COL.22_2, COL.24_2, COL.21_2, COL.16_2, COL.9_2)",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Country derived from coordinates, Continent derived from coordinates)",
 "IucnRedListCategory is one of (LC, VU, NE, EN, CR, EW, NT, DD, EX)",
 "Month is one of (January, February, April, March, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (ab13adb9-ce23-444d-87c9-ce41f03ef2b3, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 2627e955-93f5-4206-bac5-a1e3bd91ee37, d5ef14a1-5177-4547-9ce2-46d84a4214eb, 58c7e325-82fc-446d-9406-851b4d357db7, 2a7e3080-28a9-11dd-97cd-b8a03c50a862, 2fff5d0c-6bbd-432d-8832-cc4e307a267f, da86174a-a605-43a4-a5e8-53d484152cd3, 03a8bc52-9c2e-4aee-8dd7-9b4d279e4960, 1447752d-0ee4-4951-a0fb-b1f2acb977af)",
 "TaxonKey is Plantae",
 "Year 2016-2024"
 ]
}

 The dataset's 2124 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026314-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5e4ud
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinclodes aricomae (Carriker, 1932)"
 ]
}

 The dataset includes 503 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026331-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxtfks
title: Occurrence Download

description: A dataset containing 91219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)",
 "Continent is one of (North America, South America)",
 "Country is one of (United States of America, Canada, Mexico, Costa Rica, Panama, El Salvador, Colombia, Guatemala, Honduras)",
 "Geometry POLYGON((-77.95453 6.64349,-76.57787 7.99587,-75.62524 8.93169,-74.20062 9.87475,-73.16242 10.32921,-74.72772 18.36461,-61.12361 33.75685,-32.01279 58.25377,-68.16654 72.37222,-170.99345 64.72606,-164.88957 24.76012,-83.78061 2.68955,-77.95453 6.64349))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 91219 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026324-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9pp9t8
title: Occurrence Download

description: A dataset listing the 26 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.76383 -4.09062,-38.65624 -4.12769,-38.59729 -3.92469,-38.59546 -3.92286,-38.65928 -3.90463,-38.70599 -3.97399,-38.70061 -3.99276,-38.76383 -4.09062))",
 "OccurrenceStatus is Present",
 "TaxonKey is Anura"
 ]
}

 The dataset's 26 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026309-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36qzk5
title: Occurrence Download

description: A dataset containing 354753 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 354753 records from 2899 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026306-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26670366.v1
title: Additional file 7 of Methionine enkephalin (MENK) protected macrophages from ferroptosis by downregulating HMOX1 and ferritin

description: Additional file 7: Supplementary Table 7. FTL GO enrichment analysis.
DOI: 10.6084/m9.figshare.26670369
title: Additional file 8 of Methionine enkephalin (MENK) protected macrophages from ferroptosis by downregulating HMOX1 and ferritin

description: Additional file 8: Supplementary Table 8. Shared GO enrichment analysis among HMOX, FTH and FTL.
DOI: 10.6084/m9.figshare.26670366
title: Additional file 7 of Methionine enkephalin (MENK) protected macrophages from ferroptosis by downregulating HMOX1 and ferritin

description: Additional file 7: Supplementary Table 7. FTL GO enrichment analysis.
DOI: 10.6084/m9.figshare.26670369.v1
title: Additional file 8 of Methionine enkephalin (MENK) protected macrophages from ferroptosis by downregulating HMOX1 and ferritin

description: Additional file 8: Supplementary Table 8. Shared GO enrichment analysis among HMOX, FTH and FTL.
DOI: 10.6084/m9.figshare.25036330
title: Additional file 2 of MIIP downregulation drives colorectal cancer progression through inducing peri-cancerous adipose tissue browning

description: Additional file 2: Supplementary Tables.
DOI: 10.6084/m9.figshare.25036330.v1
title: Additional file 2 of MIIP downregulation drives colorectal cancer progression through inducing peri-cancerous adipose tissue browning

description: Additional file 2: Supplementary Tables.
DOI: 10.6084/m9.figshare.25036332
title: Additional file 2 of The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles

description: Additional file 2: Table S0. Correspondence of gene names to previously published peptide names. Table S1. Mean Id% of the different functional regions of vpg. Table S2. Mean Id% along the promoter of vpg families. Table S3. Expression levels of vpg in venom glands. Table S4. Gene encoding TF with TPM over 40 and evalue of annotation over 10-10. TPM in the rest of the abdomen is also indicated (TPM body) as the ratio of expression between venom gland and abdomen (Ratio). Matrix indicate if matrices are available and the site where to find them (FFS : fly factor survey database, jaspar : jaspar database). Table S5. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of each vpg families. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones. Table S6. Enriched motif predicted by amadeus on A1 promoters (-400 pb among the TSS, motif length 10, all Jaspar Database/Drosophila database, Enrichment analysis).Table S7. Enriched motif predicted by amadeus on A2 promoters, -400 pb among the TSS, motif length 12, all Jaspar Database/Drosophila database, Enrichment analysis. Table S8. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of selected TG. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones.
DOI: 10.6084/m9.figshare.25036332.v1
title: Additional file 2 of The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles

description: Additional file 2: Table S0. Correspondence of gene names to previously published peptide names. Table S1. Mean Id% of the different functional regions of vpg. Table S2. Mean Id% along the promoter of vpg families. Table S3. Expression levels of vpg in venom glands. Table S4. Gene encoding TF with TPM over 40 and evalue of annotation over 10-10. TPM in the rest of the abdomen is also indicated (TPM body) as the ratio of expression between venom gland and abdomen (Ratio). Matrix indicate if matrices are available and the site where to find them (FFS : fly factor survey database, jaspar : jaspar database). Table S5. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of each vpg families. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones. Table S6. Enriched motif predicted by amadeus on A1 promoters (-400 pb among the TSS, motif length 10, all Jaspar Database/Drosophila database, Enrichment analysis).Table S7. Enriched motif predicted by amadeus on A2 promoters, -400 pb among the TSS, motif length 12, all Jaspar Database/Drosophila database, Enrichment analysis. Table S8. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of selected TG. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones.
DOI: 10.6084/m9.figshare.25036333
title: Additional file 2 of The integration of multidisciplinary approaches revealed PTGES3 as a novel drug target for breast cancer treatment

description: Additional file 2: Table S1. The primers applied in qRT-PCR. Table S2. The DEGs between high and low immune score group. Table S3. The DEGs between high and low strimal score group. Table S4. The DEGs between high and low ESTIMATE score group. Table S5. The GO enrichment analysis of six candidate genes. Table S6. The KEGG enrichment analysis of six candidate genes. Table S7. The risk model in TCGA-BRCA cohort.
DOI: 10.6084/m9.figshare.25036333.v1
title: Additional file 2 of The integration of multidisciplinary approaches revealed PTGES3 as a novel drug target for breast cancer treatment

description: Additional file 2: Table S1. The primers applied in qRT-PCR. Table S2. The DEGs between high and low immune score group. Table S3. The DEGs between high and low strimal score group. Table S4. The DEGs between high and low ESTIMATE score group. Table S5. The GO enrichment analysis of six candidate genes. Table S6. The KEGG enrichment analysis of six candidate genes. Table S7. The risk model in TCGA-BRCA cohort.
DOI: 10.6084/m9.figshare.25045622
title: Additional file 2 of Generalized Estimating Equations Boosting (GEEB) machine for correlated data

description: Additional file 2. This research also provides the code that computes all research results. The geebm() is an R function that implements the GEEB machine. This function has seven arguments: formula, id, iteration, feature_rate, lrate, standardize, and data. Note that formula must be specified in the format "response ~ predictors" to list the predictors (input features) and response variable (output feature) in the dataset. id is a vector that identifies the clusters and can support multiple levels arranged in the order of multilayer structure. iteration is an integer representing the number of iterations, set to default at 100 iterations. feature_rate represents the proportion of random feature selection. When set to 1, it uses all features; by default, it is set to 0.5, using half of the features. lrate is a hyperparameter for the learning rate, with a default value of 0.1. standardize determines whether features are standardized, and the default does not perform standardization. data is used to input the training dataset. For example, when training the model with the Forest Fire Data in this study, the function would be: geebm(area~X+Y+FFMC+DMC+DC+ISI+temp+RH+wind+rain+day, id=c("season","month"), iteration=100, feature_rate=0.5, lrate=0.1, standardize=T, data=Dataset).
DOI: 10.6084/m9.figshare.25045622.v1
title: Additional file 2 of Generalized Estimating Equations Boosting (GEEB) machine for correlated data

description: Additional file 2. This research also provides the code that computes all research results. The geebm() is an R function that implements the GEEB machine. This function has seven arguments: formula, id, iteration, feature_rate, lrate, standardize, and data. Note that formula must be specified in the format "response ~ predictors" to list the predictors (input features) and response variable (output feature) in the dataset. id is a vector that identifies the clusters and can support multiple levels arranged in the order of multilayer structure. iteration is an integer representing the number of iterations, set to default at 100 iterations. feature_rate represents the proportion of random feature selection. When set to 1, it uses all features; by default, it is set to 0.5, using half of the features. lrate is a hyperparameter for the learning rate, with a default value of 0.1. standardize determines whether features are standardized, and the default does not perform standardization. data is used to input the training dataset. For example, when training the model with the Forest Fire Data in this study, the function would be: geebm(area~X+Y+FFMC+DMC+DC+ISI+temp+RH+wind+rain+day, id=c("season","month"), iteration=100, feature_rate=0.5, lrate=0.1, standardize=T, data=Dataset).
DOI: 10.6084/m9.figshare.25026033
title: Additional file 2 of Genomic insights into Plasmodium vivax population structure and diversity in central Africa

description: Additional file 2: Sample accession numbers and location metadata of all Plasmodium vivax and Plasmodium vivax-like whole genome sequencing data used in this study.
DOI: 10.6084/m9.figshare.25045624.v1
title: Additional file 2 of A Mitochondrial Localized Chaperone Regulator OsBAG6 Functions in Saline-Alkaline Stress Tolerance in Rice

description: Additional file 2: Table S1 Primers used in this study. Table S2 List of differentially expressed genes (DEGs) in shoots in OsBAG6OE vs. Kitaake under normal conditions. Table S3 List of differentially expressed genes (DEGs) in roots in OsBAG6OE vs. Kitaake under normal conditions. Table S4 Specifically enriched proteins in OsBAG6-FLAG expressed plants.
DOI: 10.15468/dl.7mgmr6
title: Occurrence Download

description: A dataset containing 125350 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otus scops (Linnaeus, 1758)"
 ]
}

 The dataset includes 125350 records from 816 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072801-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25045624
title: Additional file 2 of A Mitochondrial Localized Chaperone Regulator OsBAG6 Functions in Saline-Alkaline Stress Tolerance in Rice

description: Additional file 2: Table S1 Primers used in this study. Table S2 List of differentially expressed genes (DEGs) in shoots in OsBAG6OE vs. Kitaake under normal conditions. Table S3 List of differentially expressed genes (DEGs) in roots in OsBAG6OE vs. Kitaake under normal conditions. Table S4 Specifically enriched proteins in OsBAG6-FLAG expressed plants.
DOI: 10.6084/m9.figshare.26670570
title: Additional file 10 of Tetraspanin profiles of serum extracellular vesicles reflect functional limitations and pain perception in knee osteoarthritis

description: Additional file 10: Supplementary Material S3. Random forest analysis code in Python as an annotated Jupyter notebook.
DOI: 10.6084/m9.figshare.26670570.v1
title: Additional file 10 of Tetraspanin profiles of serum extracellular vesicles reflect functional limitations and pain perception in knee osteoarthritis

description: Additional file 10: Supplementary Material S3. Random forest analysis code in Python as an annotated Jupyter notebook.
DOI: 10.15468/dl.mrjcx7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geoscincus haraldmeieri (Böhme, 1976))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033398-230224095556074/datasets/export for details.
DOI: 10.15468/dl.9jg5x4
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Drawida Michaelsen, 1900"
 ]
}

 The dataset includes 71 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119428-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxv4dz
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xenochrophis bellulus (Stoliczka, 1871))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033416-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.