cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17866/rd.salford.28001966
title: CyberEntRel: Research Paper, Dataset and Code

description: The cyber threat intelligence (CTI) knowledge graph is beneficial for making robust defense strategies for security professionals. These are built from cyber threat intelligence data based on relation triples where each relation triple contains two entities associated with one relation. The main problem is that the CTI data is increasing more rapidly than expected and existing techniques are becoming ineffective for extracting the CTI information. This work mainly focuses on the extraction of cyber relation triples in an effective way using the joint extraction technique, which resolves the issues in the classical pipeline technique. Firstly, the ‘BIEOS’ tagging scheme was applied to CTI data using the joint tagging technique and then the relation triples were jointly extracted. This study utilized the attention-based RoBERTa-BiGRU-CRF model for sequential tagging. Finally, the relation triples were extracted using the relation-matching technique after matching the best suitable relation for the two predicted entities. The experimental results showed that this technique outperformed the state-of-the-art models in knowledge triple extraction on CTI data. Furthermore, a 7% increase in the F1 score also proved the effectiveness of this technique for the information extraction task on CTI data.
DOI: 10.6084/m9.figshare.c.3611315_d1.v1
title: Additional file 2: of Delineation of the population genetic structure of Culicoides imicola in East and South Africa

description: A table of estimates of genetic diversity of the microsatellite markers per population. The table describes the genetic diversity of the markers. Significant Hardy-Weinberg equilibrium (P
DOI: 10.6084/m9.figshare.c.3611321_d1.v1
title: Additional file 1: of Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression

description: Sheet 1. RNA sequence data trimming statistic. Sheet 2: Summary of initial and final de novo assembly. Sheet 3: 20 most abundant protein domain. Sheet 4–7: List of all transcripts with results from the differential expression analysis between all females and males (sheet 4), androchrome females and males (sheet 5), infuscans females and males (sheet 6), and infuscans-obsoleta females and males (sheet 7). Sheet 8–11: List of the most differentially expressed transcripts (DETs) between all females and males (sheet 8), androchrome females and males (sheet 9), infuscans females and males (sheet 10), and infuscans-obsoleta females and males (sheet 11). Sheet 12: List of enriched GO terms in DETs (based on the DETs listed in sheet 8–11). Sheet 13: Kegg pathways identified in DETs (based on the DETs listed in sheet 8). Sheet 14: List of different types of TRPs identified in the assembled transcriptome. Sheet 15: List of olfactory genes identified in the assembled transcriptome. Sheet 16: Genes/enzymes of carotenoid pigmentation pathway. Sheet 17: Genes/enzymes involved in juvenile and ecdysone pathway. Sheet 18: Gene involved in innate immune pathways. Sheet 19: Gene involved in sex-determining pathway. (XLSX 16726 kb)
DOI: 10.6084/m9.figshare.c.3611315_d2.v1
title: Additional file 1: of Delineation of the population genetic structure of Culicoides imicola in East and South Africa

description: A summary of the C. imicola markers designed to the flanking regions of the microsatellite repeats with the type of repeats. The table provides a list of a total of 169 primer pairs predicted to anneal to a unique single pair read. The motif type that the primer represents is also indicated (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3611327_d9.v1
title: Additional file 10: of Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among ferns

description: Orthogroup data file. Zipped folder containing fasta-formatted reads identified by ProteinOrtho, used for all downstream orthogroup determination and analysis, along with readme document and relevant project-specific scripts (also available online via Dryad: http://dx.doi.org/10.5061/dryad.rg22j ). (ZIP 12021 kb)
DOI: 10.6084/m9.figshare.c.3611366_d1.v1
title: Additional file 1: of Vitamin D status is associated with skin autofluorescence in patients with type 2 diabetes mellitus: a preliminary report

description: Linear regression analysis of serum 25 (OH)D as independent variable and skin auto fluorescence as dependent variable. Model 1: crude analysis. Model 2: as model 1 + age, ethnicity, season, smoking, and BMI. Model 3: as model 2 + sun exposure, diabetes duration, CVD, HbA1c, eGFR, AF (this should be AP), and LDL cholesterol. 25(OH)D 25-hydroxyvitamin D, AGE advanced glycation end product, AP alkaline phosphatase, BMI body mass index, CVD cardiovascular disease, LDL low density lipoprotein.
DOI: 10.15468/dl.uefn8h
title: Occurrence Download

description: A dataset containing 3357849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 3357849 records from 490 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069476-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7792007
title: Evaluation of landslide susceptibility in a hill city of Sikkim Himalaya with the perspective of hybrid modelling techniques

description: Landslides are common and frequent occurring phenomenon in hilly terrain during monsoon season. The primary objectives of the research work are to carry out a comprehensive analysis by quantifying the landslide susceptibility using an integrated approach of random forest (RF) with the probabilistic likelihood ratio (RF-PLR), fuzzy logic (FL) and index of entropy (IOE) in Gangtok city of Sikkim state, India. Landslide inventories are prepared based on LISS-IV (MX) satellite imagery, Google Earth and reported data of Geological Survey of India. Altogether 12 landslide conditioning factors viz. slope, elevation, curvature, aspect, land use/land cover, geology, lineament, rainfall, soil type, soil thickness, water regime and distance from road are considered as input data for geospatial modelling of landslide susceptibility. Finally, model-derived landslide susceptibility maps are classified into four hazard zones, i.e. low, medium, high and very high. To measure model compatibility model comparison is performed in ArcGIS environment and models performance is assessed by confusion matrix where RF-FL gives more accuracy of 69.36% than other two models with 9.68% and 19.35% of Type I and type II error, respectively. The outputs are validated using success and prediction rate method where, RF-PLR, RF-FL and RF-IOE show area under curve (AUC) of success and prediction rate as 76%, 67%, 83%, 78% and 85%, 80%, respectively. Additionally, the differences in model performances were analyzed by means of Wilcoxon signed rank test, where it was found that statistically differences in the performance was significant in case of RF-PLR vs. RF-FL and RF-PLR vs. RF-IOE.
DOI: 10.6084/m9.figshare.7792007.v1
title: Evaluation of landslide susceptibility in a hill city of Sikkim Himalaya with the perspective of hybrid modelling techniques

description: Landslides are common and frequent occurring phenomenon in hilly terrain during monsoon season. The primary objectives of the research work are to carry out a comprehensive analysis by quantifying the landslide susceptibility using an integrated approach of random forest (RF) with the probabilistic likelihood ratio (RF-PLR), fuzzy logic (FL) and index of entropy (IOE) in Gangtok city of Sikkim state, India. Landslide inventories are prepared based on LISS-IV (MX) satellite imagery, Google Earth and reported data of Geological Survey of India. Altogether 12 landslide conditioning factors viz. slope, elevation, curvature, aspect, land use/land cover, geology, lineament, rainfall, soil type, soil thickness, water regime and distance from road are considered as input data for geospatial modelling of landslide susceptibility. Finally, model-derived landslide susceptibility maps are classified into four hazard zones, i.e. low, medium, high and very high. To measure model compatibility model comparison is performed in ArcGIS environment and models performance is assessed by confusion matrix where RF-FL gives more accuracy of 69.36% than other two models with 9.68% and 19.35% of Type I and type II error, respectively. The outputs are validated using success and prediction rate method where, RF-PLR, RF-FL and RF-IOE show area under curve (AUC) of success and prediction rate as 76%, 67%, 83%, 78% and 85%, 80%, respectively. Additionally, the differences in model performances were analyzed by means of Wilcoxon signed rank test, where it was found that statistically differences in the performance was significant in case of RF-PLR vs. RF-FL and RF-PLR vs. RF-IOE.
DOI: 10.6084/m9.figshare.c.3611375_d1.v1
title: Additional file 1 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: PDB IDs from [ 67 ]. (CSV 0.46 kb)
DOI: 10.6084/m9.figshare.c.3611375_d2.v1
title: Additional file 9 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Spearman test for correlations between cutoff independent metrics ( Ď  max , f max , auPR, auROC) and N eff /L for Ovch32 and HisKA-RR data sets. (CSV 0.24 kb)
DOI: 10.6084/m9.figshare.c.3611384_d1.v1
title: Additional file 1: of Community perceptions and practices of treatment seeking for childhood pneumonia: a mixed methods study in a rural district, Ghana

description: Community perceptions of pneumonia Data set. (XLS 311 kb)
DOI: 10.6084/m9.figshare.c.3611375_d3.v1
title: Additional file 8 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Spearman test for correlations between cutoff independent metrics ( Ď  max , f max , auPR, auROC) and N eff for Ovch32 and HisKA-RR data sets. (CSV 0.24 kb)
DOI: 10.6084/m9.figshare.c.3611390_d1.v1
title: Additional file 2: of An improved genome reference for the African cichlid, Metriaclima zebra

description: PacBio read statistics before and after Proovread error-correction. (XLSX 37Â kb)
DOI: 10.5281/zenodo.12731788
title: Restaurant OWL file
DOI: 10.5281/zenodo.12731789
title: Restaurant OWL file
DOI: 10.5281/zenodo.12799246
title: Restaurant OWL file
DOI: 10.6084/m9.figshare.c.3611408_d4.v1
title: Additional file 13: Table S7. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Genetic and physical coordinate for Syn4 and Syn10 population. (XLSX 13078 kb)
DOI: 10.6084/m9.figshare.c.3611375_d12.v1
title: Additional file 12 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Mann-Whitney tests for difference in power between MI J and other methods for N eff /L &gt; 1.6 and FPR &lt; 5 % in the HisKA-RR sub-alignments, with contacts defined from experimental studies. (CSV 0.47 kb)
DOI: 10.6084/m9.figshare.c.3611375_d13.v1
title: Additional file 7 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: P empirical for Vif residues as an attributes file for use with UCSF Chimera [ 66 ]. (CSV 163 kb)
DOI: 10.6084/m9.figshare.c.3611408_d5.v1
title: Additional file 17: Table S11. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Comparison of genotype of Mo17 (SNPs) in the current study and the maize hapmap2 database. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3611408_d6.v1
title: Additional file 6: Table S4. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Indel discovery between Mo17 and B73. (XLSX 10006 kb)
DOI: 10.34740/kaggle/dsv/10224790
title: e-IPO Indonesia Data - Investment
DOI: 10.6084/m9.figshare.c.3611408_d7.v1
title: Additional file 8: Table S6. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Statistics for bin map data. (XLSX 214 kb)
DOI: 10.6084/m9.figshare.c.3611408_d8.v1
title: Additional file 15: Table S9. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Integrate map with high quality SNPs, bin markers and traditional markers. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3611408_d9.v1
title: Additional file 4: Table S2. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: SNP discovery between Mo17and B73. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3611414_d3.v1
title: Additional file 12: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: Analysis of protein domains in the unigenes: Distribution of protein families/domains among the genes identified from the transcriptome. The twenty most abundant families are presented with their respective family size. (TIFF 2785 kb)
DOI: 10.6084/m9.figshare.c.3611408_d10.v1
title: Additional file 20: Table S12. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: The gene list for flowering time and plant height traits which collected from previous work (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3611414_d4.v1
title: Additional file 9: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: Gene Ontology classification of the identified unigenes: Gene ontology (GO) term was assigned to each gene based on the annotation and were summarized into three main GO categories (biological process, cellular component, molecular function) while only the top 10 sub categories are presented in individual pie charts. (TIFF 1286 kb)
DOI: 10.6084/m9.figshare.c.3611414_d5.v1
title: Additional file 10: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: COG functional classification of the unigenes: The functional characteristic assigned to the unigenes through homology against NCBI COG database and their classification among the 25 categories. (TIFF 3364 kb)
DOI: 10.6084/m9.figshare.c.3611408_d17.v1
title: Additional file 16: Table S10. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Verify the high quality SNPs between parents by using Sequenom MassARRAY. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3611429_d7.v1
title: Additional file 1: Table S1. of Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants

description: Summary of the significantly altered genera after 1 and 2 weeks’ storage in the DNA Genotek OMNIgene gut kit as determined by paired DESeq analysis. Statistically significant increases in relative abundance are shown in red and significant reductions are shown in green. Both log fold change and adjusted p values are presented. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3611408_d19.v1
title: Additional file 5: Table S3. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: SNPs annotation in CDS region. (XLSX 13382 kb)
DOI: 10.6084/m9.figshare.c.3611408_d21.v1
title: Additional file 21: Table S13. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Fine mapping the cloned and candidate genes for flowering time and plant height in Syn4 and Syn10. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3611465_d1.v1
title: Additional file 4: of The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

description: Genes deregulated by hsa-miR-140-3p, 5’isomiR-140-3p or both in both MCF10A and MDA-MB-231 cells. This table contains the genes which are downregulated in both cell lines by either hsa-miR-140-3p, 5’isomiR-140-3p or both by at least 35 % and with a significant corrected p-value. These genes are summarized in the Venn diagram in Fig. 2a. In addition, the genes that are upregulated in both cell lines by at least 65 % and with a significant corrected p-value by either has-miR-140-3p, 5’isomiR-140-3p or both are also listed in this table. Values are reported as log2 fold changes and Benjamini-Hochberg corrected p-values. (XLS 74 kb)
DOI: 10.6084/m9.figshare.c.3611465_d7.v1
title: Additional file 2: of The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

description: Clinical data and miR/isomiR expression of patients from the TCGA breast cancer cohort [48]. (XLS 7116 kb)
DOI: 10.6084/m9.figshare.c.3611510_d2.v1
title: Additional file 3: Table S2. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

description: List of the 52 genes identified among the 687 tested genes in HT screening as important for the cellular fitness of parental HuH6 cells. (XLSX 18 kb)
DOI: 10.23668/psycharchives.3130
title: The ZPID Lockdown Measures Dataset for Germany

description: The outbreak of the COVID-19 pandemic has prompted the German government and the 16 German federal states to announce a variety of public health measures in order to suppress the spread of the coronavirus. These non-pharmaceutical measures intended to curb transmission rates by increasing social distancing (i.e., diminishing interpersonal contacts) which restricts a range of individual behaviors. These measures span moderate recommendations such as physical distancing, up to the closures of shops and bans of gatherings and demonstrations. The implementation of these measures are not only a research goal for themselves but have implications for behavioral research conducted in this time (e.g., in form of potential confounder biases). Hence, longitudinal data that represent the measures can be a fruitful data source. The presented data set contains data on 14 governmental measures across the 16 German federal states. In comparison to existing datasets, the data set at hand is a fine-grained daily time series tracking the effective calendar date, introduction, extension, or phase-out of each respective measure. Based on self-regulation theory, measures were coded whether they did not restrict, partially restricted or fully restricted the respective behavioral pattern. The time frame comprises March 08, 2020 until May 15, 2020. The project is an open-source, ongoing project with planned continued updates in regular (approximately monthly) intervals.
DOI: 10.5281/zenodo.12799172
title: SPARQL  query for eating establishment

description: List of the SPARQL  queries for eating establishment
DOI: 10.5281/zenodo.12799173
title: SPARQL  query for eating establishment

description: List of the SPARQL  queries for eating establishment
DOI: 10.6084/m9.figshare.c.3611510_d4.v1
title: Additional file 1: Table S1. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

description: Affymetrix DNA microarray analysis of gene expression in HuH6shCTNNB1 cells in response to Dox treatment. Gene expression profile was analyzed with Affymetrix DNA microarrays and the expression profile of HuH6shCTNNB1 treated with Dox for 2 days was compared with that of untreated HuH6shCTNNB1 cells. (XLSX 1641 kb)
DOI: 10.6084/m9.figshare.c.3611516_d1.v1
title: Additional file 1: of Assessing urinary flow rate, creatinine, osmolality and other hydration adjustment methods for urinary biomonitoring using NHANES arsenic, iodine, lead and cadmium data

description: Supporting R programming script for the numerical derivation of opimum Araki's b values and adjustment of urinary analyte concentrations using the methods described in this paper. (R 8 kb)
DOI: 10.23668/psycharchives.3132
title: Datasets for: Predictable changes within fast-paced sound sequences do not elicit the mismatch negativity: An in-class replication study
title: Müller&Scharf2020_EuropeanJournalNeuroscience_EEG-data

description: Datasets for: Müller, D. & Scharf, F. (2020). Predictable changes within fast-paced sound sequences do not elicit the mismatch negativity: An in-class replication study, European Journal of Neuroscience
DOI: 10.6084/m9.figshare.c.3611528_d2.v1
title: Additional file 2: Table S1 – S13. of Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

description: Lists of colour-associated SNPs obtained for each pairwise comparison and association analyses; genic and genotypic differentiation tests; pairwise Fst estimates among dorsal colour phenotypes; SNP correlation value (r2) in linkage disequilibrium analyses; Genome size estimates; Assembly statistics for genome and transcriptome; and lists of blast results. (XLSX 159 kb)