cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/89ccd60578bcdd833f1cae5b3774a51a
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.4663849
title: Dataset related to article "Trigeminal interfascicular neurolysis (nerve combing) for refractory recurrent neuralgia in multiple sclerosis"

description: Dataset contains anonymized clinical and surgical information on case reported in the related article
description: Study received the support of Italian Ministry of Health (program RC2020)
DOI: 10.6084/m9.figshare.14375915
title: Supplementary Material for: Temporal Variation in <b><i>Staphylococcus aureus</i></b> Protein A Genotypes from Nose and Skin in Atopic Dermatitis Patients

description: <b><i>Background:</i></b> <i>Staphylococcus aureus</i> colonization is associated with disease severity in patients with atopic dermatitis (AD). <b><i>Objective:</i></b> To investigate temporal variation in <i>S. aureus</i> protein A gene (<i>spa)</i>-types isolated from the nose and lesional skin and the correlation of <i>spa</i>-types with disease severity. <b><i>Results:</i></b> This study included 96 adult AD patients who were assessed at baseline (T0) and after a strict 2-week follow-up period (T1) in which treatment was standardized with a topical corticosteroid. Fifty-five different <i>spa</i>-types were detected in the nose and skin cultures. Seventy-three patients were colonized with <i>S. aureus</i> in the nasal cavity at both time points (persistent carriership), 59 of whom (81%) had identical <i>spa</i>-types over time. For skin samples, 42 (75%) of the 56 persistent skin carriers had identical <i>spa</i>-types over time. The same <i>spa</i>-type was carried in the nose and skin in 79 and 77% of the patients at T0 and T1, respectively. More severe disease was not associated with specific <i>spa</i>-types or with temporal variation in <i>spa</i>-type. <b><i>Conclusion:</i></b> <i>S. aureus</i> strains in AD are highly heterogeneous between patients. The majority of patients carry the same <i>spa</i>-type in the nose and skin without temporal variation, suggesting clonal colonization within individual patients. No predominant <i>spa</i>-type or temporal variation is associated with increased disease severity.
DOI: 10.6073/pasta/d6ec50f0edf4e247956e45bb8e334f91
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/4e8f7bb357436e459e1cd774e36e985e
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-7. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.14376116
title: Table S1.xlsx

description: Zircon U–Pb age and REE data for in the Wuwamen accretionary complex of the Chinese South Tianshan.
DOI: 10.6084/m9.figshare.14376167
title: Table S2.xlsx

description: Hf-in-zircon isotopic compositions of the amphibolite and garnet amphibolite blocks in the Wuwamen accretionary complex of the Chinese South Tianshan.
DOI: 10.6084/m9.figshare.14376167.v2
title: Table S2.xlsx

description: Hf-in-zircon isotopic compositions of the amphibolite and garnet amphibolite blocks in the Wuwamen accretionary complex of the Chinese South Tianshan.
DOI: 10.6084/m9.figshare.14376167.v1
title: Table S2

description: Hf-in-zircon isotopic compositions of the amphibolite and garnet amphibolite blocks in the Wuwamen accretionary complex of the Chinese South Tianshan.
DOI: 10.5281/zenodo.4663952
title: Dataset from Trifirò G, Mora S, Marelli S, Luzi L, Pini A. Increased fracture rate in children and adolescents with Marfan syndrome. Bone. 2020 Jun;135:115333. doi: 10.1016/j.bone.2020.115333. Epub 2020 Mar 25. PMID: 32222606.

description: Dataset from the article Trifirò G, Mora S, Marelli S, Luzi L, Pini A. Increased fracture rate in children and adolescents with Marfan syndrome. Bone. 2020 Jun;135:115333. doi: 10.1016/j.bone.2020.115333. Epub 2020 Mar 25. PMID: 32222606. Abstract Marfan syndrome (MFS) is an autosomal genetic disorder of connective tissue, due to alterated fibrillin-1. The aim of our study was to verify the rate of fractures in children with MFS in correlation to bone mineral density and compare the prevalence to the general population in the same latitude. We enrolled 80 patients (37 girls and 43 boys) with the diagnosis of Marfan syndrome, median age 10 y (3 to 17 years). Fracture occurrence was inferred from medical records of patients with MFS. Bone mineral density (BMD) was measured at lumbar spine, femoral neck and total femur by dual-energy x-ray absorptiometry. BMD values were expressed as z-scores, and adjusted for height using height-for-age z-scores. Bone turnover markers and vitamin D were measured. We assessed incidence of fracture in general pediatric population of our geographic area (45°N latitude). A total of 24 fractures were recorded in 21 patients (15 boys and 6 girls), involving both short and long bones, due to mild or moderate trauma. An incidence estimate has been calculated for each year, and an average incidence of 29.2/1000 MFS patients was obtained, markedly higher (P=0.034) than the incidence of fracture calculated in the same geographical area in pediatric patients (15.8/1000). We did not detect differences in anthropometric measurements, BMD values and biochemical indices between patients who fractured and patients who did not. Similarly, no differences were found between patients on losartan therapy and patients not in treatment for the same variables. In conclusion, the incidence of fractures was higher in patients with MFS compared to general population of the same age and latitude. The management of MFS must account bone status health and start strategies of fracture prevention.
DOI: 10.5281/zenodo.4663951
title: Dataset from Trifirò G, Mora S, Marelli S, Luzi L, Pini A. Increased fracture rate in children and adolescents with Marfan syndrome. Bone. 2020 Jun;135:115333. doi: 10.1016/j.bone.2020.115333. Epub 2020 Mar 25. PMID: 32222606.

description: Dataset from the article Trifirò G, Mora S, Marelli S, Luzi L, Pini A. Increased fracture rate in children and adolescents with Marfan syndrome. Bone. 2020 Jun;135:115333. doi: 10.1016/j.bone.2020.115333. Epub 2020 Mar 25. PMID: 32222606. Abstract Marfan syndrome (MFS) is an autosomal genetic disorder of connective tissue, due to alterated fibrillin-1. The aim of our study was to verify the rate of fractures in children with MFS in correlation to bone mineral density and compare the prevalence to the general population in the same latitude. We enrolled 80 patients (37 girls and 43 boys) with the diagnosis of Marfan syndrome, median age 10 y (3 to 17 years). Fracture occurrence was inferred from medical records of patients with MFS. Bone mineral density (BMD) was measured at lumbar spine, femoral neck and total femur by dual-energy x-ray absorptiometry. BMD values were expressed as z-scores, and adjusted for height using height-for-age z-scores. Bone turnover markers and vitamin D were measured. We assessed incidence of fracture in general pediatric population of our geographic area (45°N latitude). A total of 24 fractures were recorded in 21 patients (15 boys and 6 girls), involving both short and long bones, due to mild or moderate trauma. An incidence estimate has been calculated for each year, and an average incidence of 29.2/1000 MFS patients was obtained, markedly higher (P=0.034) than the incidence of fracture calculated in the same geographical area in pediatric patients (15.8/1000). We did not detect differences in anthropometric measurements, BMD values and biochemical indices between patients who fractured and patients who did not. Similarly, no differences were found between patients on losartan therapy and patients not in treatment for the same variables. In conclusion, the incidence of fractures was higher in patients with MFS compared to general population of the same age and latitude. The management of MFS must account bone status health and start strategies of fracture prevention.
DOI: 10.5281/zenodo.4266202
title: Multidimensional photoemission spectra of tungsten diselenide

description: Pump-probe multidimensional photoemission spectroscopy (MPES) of tungsten diselenide (WSe2) measured using an electron momentum microscope at the FLASH Free Electron Laser. This is an example file for data standardization of MPES and has been linked to the publication,<br> <br> <strong>D. Kutnyakhov, R. P. Xian, M. Dendzik, M. Heber, F. Pressacco, S. Y. Agustsson, L. Wenthaus, H. Meyer, S. Gieschen, G. Mercurio, A. Benz, K. Bühlman, S. Däster, R. Gort, D. Curcio, K. Volckaert, M. Bianchi, Ch. Sanders, J. A. Miwa, S. Ulstrup, A. Oelsner, C. Tusche, Y.-J. Chen, D. Vasilyev, K. Medjanik, G. Brenner, S. Dziarzhytski, H. Redlin, B. Manschwetus, S. Dong, J. Hauer, L. Rettig, F. Diekmann, K. Rossnagel, J. Demsar, H.-J. Elmers, Ph. Hofmann, R. Ernstorfer, G. Schönhense, Y. Acremann, W. Wurth, Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser, Review of Scientific Instruments 91, 013109 (2020). DOI: 10.1063/1.5118777</strong>. The single-event data (in events.zip file) associated with the preprocessed data are linked to the publication,<br> <br> <strong>R. P. Xian, Y. Acremann, S. Y. Agustsson, M. Dendzik, K. Bühlmann, D. Curcio, D. Kutnyakhov, F. Pressacco, M. Heber, S. Dong, T. Pincelli, J. Demsar, Wilfried Wurth, Ph. Hofmann, M. Wolf, M. Scheidgen, L. Rettig, R. Ernstorfer, An open-source, end-to-end workflow for multidimensional photoemission spectroscopy, Scientific Data 7, 442 (2020). DOI: 10.1038/s41597-020-00769-8</strong><br> <br> The zip file contains data for analysis (under events/analysis_data folder) and data for calibration (under events/calibration_data folder).
DOI: 10.5281/zenodo.3987304
title: Datasets for the computational workflow of multidimensional photoemission spectroscopy

description: Recorded single-electron event data of bulk 2H-WSe<sub>2</sub> photoemission from a commercial momentum microscope (SPECS METIS 1000).These data are used for demonstration of the computational workflow explained in the following publication.<br> <br> <strong>R. P. Xian, Y. Acremann, S. Y. Agustsson, M. Dendzik, K. Bühlmann, D. Curcio, D. Kutnyakhov, F. Pressacco, M. Heber, S. Dong, T. Pincelli, J. Demsar, Wilfried Wurth, Ph. Hofmann, M. Wolf, M. Scheidgen, L. Rettig, R. Ernstorfer, An open-source, end-to-end workflow for multidimensional photoemission spectroscopy, Scientific Data 7, 442 (2020). DOI: 10.1038/s41597-020-00769-8</strong><br> <br> The zip files are not directly usable for running the computational workflow, but requires first to unzip into HDF5 format (.h5).
DOI: 10.5281/zenodo.3987303
title: Datasets for the computational workflow of multidimensional photoemission spectroscopy

description: Recorded single-electron event data of bulk 2H-WSe<sub>2</sub> photoemission from a commercial momentum microscope (SPECS METIS 1000).These data are used for demonstration of the computational workflow explained in the following publication.<br> <br> <strong>R. P. Xian, Y. Acremann, S. Y. Agustsson, M. Dendzik, K. Bühlmann, D. Curcio, D. Kutnyakhov, F. Pressacco, M. Heber, S. Dong, T. Pincelli, J. Demsar, Wilfried Wurth, Ph. Hofmann, M. Wolf, M. Scheidgen, L. Rettig, R. Ernstorfer, An open-source, end-to-end workflow for multidimensional photoemission spectroscopy, Scientific Data 7, 442 (2020). DOI: 10.1038/s41597-020-00769-8</strong><br> <br> The zip files are not directly usable for running the computational workflow, but requires first to unzip into HDF5 format (.h5).
DOI: 10.17632/scb94fgt86.1
title: Data for: Retrieving stem meanings in opaque words during auditory lexical processing

description: The scripts and datasets to reproduce the analyses reported in the paper can be found in this repository. Creemers & Embick. "Retrieving stem meanings in opaque words during auditory lexical processing"
DOI: 10.6084/m9.figshare.14376191
title: Martynenko et al., 2021 Cryptomonas erosa clade 18s+28S+psbA alignment.fas

description: This FASTA alignment contains a concatenated dataset of partial 18S and 28S rDNA and psbA cpDNA genes.
DOI: 10.6084/m9.figshare.14376191.v1
title: Martynenko et al., 2021 Cryptomonas erosa clade 18s+28S+psbA alignment.fas

description: This FASTA alignment contains a concatenated dataset of partial 18S and 28S rDNA and psbA cpDNA genes.
DOI: 10.6073/pasta/230f568fdb13ff99ac2a33e27af1dde2
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-7. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/cdebb6043dd7ebe7ac4d44a63880ef53
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.4420269
title: Worldwide Fraxinus Genome Assemblies, Annotations, and Gene Families v0.2

description: The worldwide <em>Fraxinus</em> genome project was conducted to assess the pathogenic resistance of 34 Ash tree species to Ash Dieback and Emerald Ash Borer. The project is led by Dr. Richard Buggs. v0.1 genomes are available at ashgenome.org and on ENA. As part of Josiah Seaman's PhD thesis, he improved the assembly of 13 genomes included here as v0.2. New de novo annotations, gene families, and all associated files are included for future studies and reproducibility. Annotations are done with GeMoMa using F. excelsior as a reference (Keilwagen et al. 2016). Gene families are defined as genes originating from a single copy at the last common ancestor with Solanum. Orthofinder outputs reconciled gene trees, aligned CDS, and gene families (Emms and Kelly 2015; Tekaia 2016). Species tree was calibrated based on fossil evidence using r8s, RAxML across 25,182,399 sites (SpeciesTreeAlignment.fa). More methods details can be found in the full Chapter two of Josiah Seaman's PhD thesis (2021). I'd be happy to talk with you if you'd like any additional information or help visualizing your genomic data. You can find the tools used to browse this data at https://fluentdna.com/ and http://graphgenome.org/ Contact me at josiah@newline.us
description: 0.2.1 Listed the same data files separately so they could be more easily linked directly.
DOI: 10.6073/pasta/3ae22043ae90b3a7cf3c4408653d232d
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-7 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.5281/zenodo.4302551
title: Worldwide Fraxinus Genome Assemblies, Annotations, and Gene Families v0.2

description: The worldwide <em>Fraxinus</em> genome project was conducted to assess the pathogenic resistance of 34 Ash tree species to Ash Dieback and Emerald Ash Borer. The project is led by Dr. Richard Buggs. v0.1 genomes are available at ashgenome.org and on ENA. As part of Josiah Seaman's PhD thesis, he improved the assembly of 13 genomes included here as v0.2. New de novo annotations, gene families, and all associated files are included for future studies and reproducibility. Annotations are done with GeMoMa using F. excelsior as a reference (Keilwagen et al. 2016). Gene families are defined as genes originating from a single copy at the last common ancestor with Solanum. Orthofinder outputs reconciled gene trees, aligned CDS, and gene families (Emms and Kelly 2015; Tekaia 2016). Species tree was calibrated based on fossil evidence using r8s, RAxML across 25,182,399 sites (SpeciesTreeAlignment.fa). More methods details can be found in the full Chapter two of Josiah Seaman's PhD thesis (2021). I'd be happy to talk with you if you'd like any additional information or help visualizing your genomic data. You can find the tools used to browse this data at https://fluentdna.com/ and http://graphgenome.org/ Contact me at josiah@newline.us
description: 0.2.1 Listed the same data files separately so they could be more easily linked directly.
DOI: 10.5281/zenodo.4664121
title: Table 1 shows primary data used for retrospective evaluation of animal production published literature 2015-2020

description: Supplementary table hows primary data used for retrospective evaluation of animal production published literature 2015-2020.
DOI: 10.5281/zenodo.4664120
title: Table 1 shows primary data used for retrospective evaluation of animal production published literature 2015-2020

description: Supplementary table hows primary data used for retrospective evaluation of animal production published literature 2015-2020.
DOI: 10.6073/pasta/53a5ae54864a47fd525f4ef5b2f716ed
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.21954/ou.rd.12033876
title: Locations and Classifications of Vents on Mercury

description: A list of coordinates for volcanic vents on the planet Mercury and their classification based on whether they are compound or not based on morphology. Data to support the paper “Explosive Vent Sites on Mercury: Commonplace Multiple Eruptions and their Implications”, submitted to Icarus.<br>
DOI: 10.21954/ou.rd.12033876.v2
title: Locations and Classifications of Vents on Mercury

description: A list of coordinates for volcanic vents on the planet Mercury and their classification based on whether they are compound or not based on morphology. Data to support the paper “Explosive Vent Sites on Mercury: Commonplace Multiple Eruptions and their Implications”, submitted to Icarus.<br>
DOI: 10.21954/ou.rd.12033876.v1
title: Locations and Classifications of Vents on Mercury

description: A list of coordinates for volcanic vents on the planet Merucry and there classification based on if they are compound or not.<br>