DOI: 10.6084/m9.figshare.7314731.v8
title: Kellenberger_etal_overdominance_datasets

description: <b>Study:</b>Emergence of a floral colour polymorphism by pollinator-mediated overdominance<br><br><b>Authors:</b>Roman T. Kellenberger, Kelsey J.R.P. Byers, Rita M. De Brito Francisco, Yannick M. Städler, Amy M. LaFountain, Jürg Schönenberger, Florian P. Schiestl, Philipp M. Schlüter<br><br><b>Small datasets:</b> Table containing estimated absolute and relative frequencies of G. rhellicani colour morphs at Puflatsch 1997-2016 Table containing morphological and fitness data for the G. rhellicani colour morphs in the 14 plots at Puflatsch 2015-2016 Table containing morphological, metabolomic, and genetic data for the focal G. rhellicani plants at Puflatsch Table containing results of the pollinator exclusion experiment conducted at Ofenpass in 2016 Table containing time-lapse camera recordings of insect landings on G. rhellicani inflorescences at Puflatsch 2016-2017 Table containing genetic information of the G. rhellicani plants used for time-lapse recordings of insect landings in 2017 Table containing temperature measurements of G. rhellicani inflorescences at Puflatsch in 2016 Table containing floral scent profiles from 3 time points, morphological, and genetic information of G. rhellicani plants Table containing morphological, metabolomic, and genetic data for G. rhellicani plants at Bondone Table containing genetic information of G. rhellicani plants from 13 other Alpine populations Table containing qRT-PCR quantifications of GrMYB1 and GrANS1 in G. rhellicani plants from Ofenpass treated with GrMYB1 dsRNA<br><br><br><b>Images focal plants:</b>Compressed folder containing jpeg images of inflorescences of the focal <i>G. rhellicani</i> plants (Puflatsch and Bondone). See small datasets for sample information.<br><br><br><b>Images plot plants 2015:</b>Compressed folder containing jpeg images of inflorescences of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Brightness of the photos has been increased to facilitate flower counting. Images for plot C are missing. See small datasets for sample information.<br><br><br><b>Images plot plants fruits 2015:</b>Compressed folder containing jpeg images of infructescences of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Brightness of the photos has been increased to facilitate fruit counting. See small datasets for sample information.<br><br><b>Images plot plants seeds 2015:</b>Compressed folder containing jpeg microscopy images of seeds of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Filename structure: plant ID - date - image number. See small datasets for sample information.<br><br><b>Images plot plants 2016:</b>Compressed folder containing jpeg images of inflorescences of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population re-flowering in 2016. See small datasets for sample information.<br><br><b>Images pollinator exclusion plants fruits 2016:</b>Compressed folder containing jpeg images of infructescences of the <i>G. rhellicani</i> plants used in the pollinator exclusion experiment in the Ofenpass population in 2016. See small datasets for sample information.<br><br><b>Images pollinator exclusion plants seeds 2016:</b>Compressed folder containing jpeg microscopy images of seeds of the <i>G. rhellicani</i> plants used in the pollinator exclusion experiment in the Ofenpass population in 2016. Filename structure: plant ID - date - image number. See small datasets for sample information.<br><br><b>Pollinator recordings 2016 1-3:</b>gzip compressed folders containing part 1, 2, and 3 of the pollinator recordings at the Puflatsch population in 2016<br>md5 part1 (zip): 29b3bdd842268c5141fb248c4f8bc8be<br>md5 part2 (zip): 40037e1bd330bb34b00f862813f57f26<br>md5 part3 (zip): 30ab5a7c5e25225769bed4fc31a1234f<br><br><br><b>Pollinator recordings 2017 1-2:</b>gzip compressed folders containing part 1 and 2 of the pollinator recordings at the Puflatsch population in 2017<br>md5 part1 (zip): 21cbe67199a9b06c8c5071dc5c75d2e9md5 part2 (zip): 28a888155319d4fb469b1d6ac52823a2<br><br><br><b>RSEM dataset:</b>gzip compressed table containing RSEM-generated expression values per transcript and <i>Gymnadenia rhellicani </i>plant individual extracted from the corresponding Lexogen QuantSeq dataset. See small datasets for sample information.<br><br>md5 (zip):4ea420187da3f9dcbbd63b98b45962ab<br><br>md5 (uncompressed): 5a60c6ec4de1973eec2b929d4ce4de21<br><br><b>TWAS dataset:</b>gzip-compressed vcf file containing sequence variation data per transcript and <i>Gymnadenia </i>plant individual extracted from the corresponding Lexogen QuantSeq dataset.<br>md5 (zip): <br>fa9f89cfd7cd8062558893a00df451a8<br><br>md5 (uncompressed): 8081a0b6ab1901c2f8ce6ac73ab4ef75<br>Sample species:GdKB: <i>Gymnadenia conopsea</i>NrRTK: <i>Gymnadenia rhellicani</i><br>Sample origin / population:GdKB1: Davos, SwitzerlandGdKB2: Preda, Switzerland<br>GdKB3: Tschierv, Switzerland<br>NrRTK3 and NrRTK4: Puflatsch, ItalyNrRTK5: Chandolin, SwitzerlandNrRTK9: Ofenpass, Switzerland<br><br><b>TRINITY dataset:</b>gzip-compressed fasta file containing the Trinity-assembled combined reference transcriptome for <i>Gymnadenia</i>.<br><br>md5 (zip):bc1d625b2518f1cb3dc72fb97d87fc07<br><br>md5 (uncompressed):43c7838a0ac20c4c23917d6bd4818f32<br><br><i>Gymnadenia</i> samples used for assembly:NrRTK4G - <i>G. rhellicani </i>(Puflatsch, Italy, black)<br>NrRTK3E2 - <i>G. rhellicani</i> (Puflatsch, Italy, red)NrRTK3F2 - <i>G. rhellicani </i>(Puflatsch, Italy, white)NrRTK5W - <i>G. rhellicani </i>(Chandolin, Switzerland, yellow)NrRTK5X - <i>G. rhellicani</i> (Chandolin, Switzerland, black)<br>NrRTK9L - <i>G. rhellicani</i> (Ofenpass, Switzerland, black)<br>GdKB1P - <i>G. densiflora</i> (Davos, Switzerland)GdKB2E - <i>G. densiflora</i> (Preda, Switzerland)<br>GcKG13 - <i>G. conopsea</i> (Tschierv, Switzerland)GoKG19 - <i>G. odoratissima</i> (Tschierv, Switzerland)<br><br><b>Sequences <i>GrMYB1</i>:</b>gzip-compressed folder containing .ab1 Sanger sequences produced for <i>GrMYB1 </i>genotyping. Filename structure: sample ID - primer - date - well. See small datasets for sample information.<br><br><b>Sequences <i>GrANS1</i>:</b>gzip-compressed folder containing .ab1 Sanger sequences produced for <i>GrANS1 </i>genotyping. Filename structure: sample ID - primer. Primer 1R covers the upstream (reverse complement), and primer 2F covers the downstream part of the cds. See small datasets for sample information.