cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xgfhrtbw48.1
title: Grentzinger_TraPR_RAW_Data

description: A universal method for the rapid isolation of all known classes of functional small RNAs. Diverse classes of regulatory small (s)RNAs operate via ARGONAUTE-family proteins within RNA-induced-silencing-complexes (RISCs). Based on the conserved biochemical properties intrinsic to all ARGONAUTEs, we have developed a universal, 15-min benchtop extraction procedure allowing simultaneous purification of all classes of RISC-associated sRNAs, without prior knowledge of the sample’s -intrinsic ARGONAUTE repertoires. Optimized as a user-friendly kit, the method –coined “TraPR” for Trans-kingdom, rapid, affordable Purification of RISCs– operates irrespectively of the organism, tissue, cell type or bio-fluid of interest, and scales to minute amounts of input material. The method is highly suited for direct sRNA profiling, with TraPR-generated libraries outperforming those obtained via gold-standard procedures that require immunoprecipitations and/or lengthy polyacrylamide gel excisions. TraPR considerably improves the quality and consistency of sRNA sample preparation including from notoriously difficult-to-handle tissues/bio-fluids such as starchy storage roots and mammalian plasma, and regardless of RNA contaminants or samples’ RNA-degradation status.
DOI: 10.17632/ywskt5hdhj.1
title: simulated annealing codes with data

description: These are some codes and data constructed in Matlab software.
DOI: 10.17632/7p3hyypmjm.6
title: Ocean Hazards Database (OHD) for the State of Hawaii Statewide Coastal Highway Program Report

description: This Ocean Hazards Database (OHD) contains all relevant geographic information system (GIS) layers, maps, measures, interpretations, and rankings from the Ocean Hazards Classification Scheme (OHCS) assessment of 302 mileposts and points of interest across coastal state routes in Hawaii. OHCS variable are historical sea level rise rates (in/yr), projected sea level rise rates by 2050 and 2100 (in/yr), mean tidal ranges (ft), maximum annually recurring peak wave periods (sec) and significant wave heights (ft), mean projected shoreline change rates (ft/yr), coastal armoring rankings, historical and hypothetical tsunami flow depths (ft), hypothetical category 1-4 storm surge inundation heights (ft), and nearshore benthic habitat characteristics. OHCS ranking criterions and methods are described in chapter 3 of the State of Hawaii Statewide Coastal Highway Program Report (2019). Map Packages contain GIS layers and mapping layouts for the assessment and projection of sea level rise inundation, maximum annually recurring wave characteristics, projected shoreline change, storm surge inundation, and offshore bathymetry. Supplementary Tables contain OHCS measure results and rankings for 302 mileposts and points of interest across coastal state routes in Hawaii. Representative dataset references are included in table footnotes. Supplementary Maps contain image files of nearshore and offshore transects, sea level rise inundation extents, maximum annually recurring wave characteristics, projected shoreline changes, and storm surge inundation extents for 302 mileposts and points of interest across coastal state routes in Hawaii. This project was funded by the Hawaii Department of Transportation, HWY-06-16, entitled "Statewide Highway Shoreline Protection Program Study Update."
DOI: 10.17632/2d88sgdhw9.1
title: Positive Attentional Biases Moderate the ABT-Anxiety Link

description: The association between attentional bias for threat (ABT) and anxiety is not equivalent between persons characterised by attentional biases towards and away from positive stimuli.
DOI: 10.17632/vs292g83c4.2
title: Data for: Collision chronology along the İzmir-Ankara-Erzincan suture zone: Insights from the Sarıcakaya Basin, western Anatolia

description: Includes new zircon U-Pb data from this study, as well as the previously published data used in this study. See text and supporting information for details of U-Pb analyses and discussion of the data. Description and references for previously published geochronology data are provided in the text.
DOI: 10.17632/cshv5hk3m9.1
title: Analysis of two ferrocenyl chalcones

description: NMR spectroscopy and Crystallographic data of two Ferrocenyl chalcones
DOI: 10.17632/cshv5hk3m9.2
title: Analysis of two ferrocenyl chalcones

description: NMR spectroscopy and Crystallographic data of two Ferrocenyl chalcones
DOI: 10.17632/dphnhn3kjw.1
title: Perioperative behavioural changes and hippocampal noradrenaline alterations in type 2 diabetes model mice

description: Postoperative mental illness is one of the problems in patients with diabetes mellitus. However, the pathophysiology is unclear. Recently, a deficiency of neurotransmitters was reported to be associated with mental disorders. Therefore, we investigated the effects of surgical stress on behaviors and the hippocampal noradrenaline (NA) level in type 2 diabetes mellitus model (T2DM) mice. Eighty-four 6-week-old male C57BL/6J mice were divided into four groups (control, surgery control, T2DM, and surgery T2DM groups). T2DM mice were established by feeding a high fat diet (HFD). At 14 weeks of age, fifteen mice in every group underwent a series of behavioral tests including an open field (OF) test, a novel objective recognition (NOR) test and a light-dark box (LD) test. In the surgery groups, open abdominal surgery was performed 24 hours before the tests. Hippocampal NA was examined in six mice in each group by high-performance liquid chromatography.
DOI: 10.17632/c54dsb2nm9.2
title: C++ code for Bundle Adjustment

description: The data contain a VS2013 project (with all the source code files ) for the bundle adjustment program. Contact the author (tengve@163.com) for decompression key.
DOI: 10.17632/3r2827w6f4.1
title: Ancillary Variables, N2O Concentrations, and N2O Diffusive Fluxes in the Subtropical Mariculture Ponds in Southeast China

description: We examined the plot-scale spatial variations of dissolved N2O concentrations in water and N2O fluxes across the water-air interface in the subtropical shrimp ponds in southeast China using the headspace equilibration and the gas transfer methods. Our results showed that the dissolved concentrations and diffusive fluxes of N2O in the shrimp ponds ranged from 2.26 to 19.20 nM and from 16.43 to 589.65 nmol m-2 h-1, respectively, over the culture period. Significant variations of N2O concentrations and fluxes were observed within ponds, with higher values being observed in the aeration area that could be attributed to the enhanced nitrification and denitrification. Also, N2O concentrations and fluxes varied significantly among the three studied ponds as a result of the difference in N-NO3- and N-NH4+ concentrations in water. The large fine-scale spatial variations of N2O concentrations and fluxes in our aquaculture ponds suggest that management practices such as aeration and bait feeding could greatly affect the influence of aquaculture activity on N2O emissions and climate change
DOI: 10.17632/txw3pf3wrm.3
title: Geochemical and chronological constraints on interactions between the Yap arc and the Caroline plateau: Datasets and Supplementary Materials

description: The supporting information for this paper includes text and tables. The text file is a description of detailed analyses methods (Text S1) . Tables give completed data for geochemistry and geochronology results of Yap Arc basement rock samples, which includes: Table S1 (Mineral assemblages of the selective samples), Table S2 (SIMS U–Th–Pb analytical results of titanites in Yap amphibolites), Table S3 (major and trace elements data and Sr-Nd-Pb-Hf isotopes data), Table S4 (40Ar/39Ar VG3600 furnace step-heating analytical results for Y3-9-5 amphiboles) and Table S5(ARGUSVI 40Ar/39Ar laser step-heating analytical results for Y30059-1 amphiboles), which are uploaded separately.
DOI: 10.5281/zenodo.3405358
title: Crustal thickness and residual topography data for NE Africa

description: The files in this gzipped tar file are crustal thicknesses, density anomalies, and residual<br> topography estimates for NE Africa as used in Faccenna et al. (Nature<br> Geoscience, in press, 2019), they are in the Netcdf/GMT grd format. lc.6.grd has crustal thickness in [km], rtl.6.grd the estimated,<br> non-isostatic topography in [km] assuming constant lithospheric<br> thickness and variable density anomalies from CRUST1.0, provided in<br> ades.grd [kg/m^3]. Thorsten Becker, UT Austin, 09/2019<br> twb@ig.utexas.edu
DOI: 10.5281/zenodo.3405359
title: Crustal thickness and residual topography data for NE Africa

description: The files in this gzipped tar file are crustal thicknesses, density anomalies, and residual<br> topography estimates for NE Africa as used in Faccenna et al. (Nature<br> Geoscience, in press, 2019), they are in the Netcdf/GMT grd format. lc.6.grd has crustal thickness in [km], rtl.6.grd the estimated,<br> non-isostatic topography in [km] assuming constant lithospheric<br> thickness and variable density anomalies from CRUST1.0, provided in<br> ades.grd [kg/m^3]. Thorsten Becker, UT Austin, 09/2019<br> twb@ig.utexas.edu
DOI: 10.17632/cfhdbs726g.1
title: Influence of aluminum distearate as solid lubricant on the microstructure of UO2 fuel

description: Sintering behaviors of pure UO2 and UO2-0.2%wtADS
DOI: 10.17632/cydydch3xz.1
title: Supplementary Material

description: Supplementary Material for 'A crosslinked polymer skin barrier film for moderate to severe atopic dermatitis: A pilot study in adults'
DOI: 10.17632/v37whw7fzw.1
title: Data: The use of hydrogen cyanamide or nitrogen fertilizer increases vegetative and productive performance of fig tree in Brazil

description: Data: The use of hydrogen cyanamide or nitrogen fertilizer increases vegetative and productive performance of fig tree in Brazil
DOI: 10.17632/ckync9yvvr.2
title: Dataset for the metamodeling of naturally ventilated Brazilian low-cost houses to assess thermal performance

description: Research objective: This study aimed to develop metamodels to assess the thermal discomfort in naturally ventilated Brazilian low-cost houses during early design as a decision-making support framework, and for educational purposes. Method overview: The method encompassed a large number of simulations of the software EnergyPlus [EP] 8.1 using the Monte Carlo method. These simulations were used to develop a set of regression-based mathematical relationships between the inputs and the outputs. The Monte Carlo method was selected to help sample the many independent input variables, each with its own range of values, and form equally likely random combinations of input conditions for the energy simulation. The EnergyPlus outputs were post processed to assess the thermal comfort by means of the degree hours of discomfort by heat and by cold. Files description: The following data items were made available. (a) Parameter_Domains: Curitiba_parameterdomains.csv; Manaus_parameterdomains.csv and Sao_Paulo_parametersdomains.csv: CSV files created for each location. They contain a list of the 24 key parameters and random combinations of their values to create the input data for the 10,000 simulations. (b) Performance_Metrics: Curitiba_performancemetrics.csv; Manaus_performancemetrics.csv and Sao_Paulo_performancemetrics.csv: CSV files created for each location. They contain output values (outdoor and indoor discomfort by heat and by cold) for 10,000 simulations. (c) Sandbox: Sandbox.xlsx: Excel file for the application of the metamodels. It enables a quick and easy assessment of discomfort by heat and by cold for specific combinations of parameters, for each location. (d) Python_Codes: Python_Codes.zip: Compressed file consisting of the codes used to 1) run the simulations randomly combining values for each selected parameter within their specified ranges, and 2) to calculate the hours of discomfort by heat and by cold for each of the parameters’ combinations (10,000 simulations for each studied climate). (e) IDFs_Base: Curitiba_idfbase.idf; Manaus_idfbase.idf; Sao_Paulo_idfbase.idf : Input Data File (IDF) created for each location. They contain the description of all input data considered in an annual building performance simulation.
DOI: 10.5281/zenodo.3405385
title: Procedures and observational dataset for the EDT analysis

description: These files contain the R codes and observational data set for the EURODELTA-Trends (EDT) analysis submitted to Geoscientific Model Development (GMD). Also included here are the land use data and the cells coordinates/areas of the EDT domain.
DOI: 10.5281/zenodo.3405386
title: Procedures and observational dataset for the EDT analysis

description: These files contain the R codes and observational data set for the EURODELTA-Trends (EDT) analysis submitted to Geoscientific Model Development (GMD). Also included here are the land use data and the cells coordinates/areas of the EDT domain.
DOI: 10.25345/c5908b
title: MassIVE MSV000084311 - XL-MS analysis using a Flp-In-293 cell line stably expressing Halo-SAP30L
title: XL-MS analysis using a Flp-In-293 cell line stably expressing Halo-SAP30L
DOI: 10.24378/exe.1823
title: How Robust is the Atmospheric Response to Projected Arctic Sea-Ice Loss Across Climate Models? (dataset)

description: This is the dataset used for the Screen et al. (2019) article "How Robust is the Atmospheric Response to Projected Arctic Sea-Ice Loss Across Climate Models?" published in Geophysical Research Letters.
description: NetCDF files containing post-processed data sufficient to replicate the published figures.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/39925
DOI: 10.17632/wbp4tgtfmr.1
title: Kühbeck et al. 2019 BMC Medical Education: Statistical raw data

description: Raw data of MEED-D-18-00001R6 BMC Medical Education "Correlation of online assessment parameters with summative exam performance in undergraduate medical education of pharmacology: a prospective cohort study.”
DOI: 10.17632/v6gpnpxfm8.1
title: Data for : Voltage-gated potassium channel proteins and stereoselective S-nitroso-L-cysteine signaling

description: Method 1: L-CSNO binding to proteins after native-PAGE separation The mouse brain membrane fraction (above) was resuspended in HEPES buffer. A BCA (Pierce) protein assay was performed and 50 µg protein was run on two native-PAGE gels (TGX, Bio Rad). One gel was incubated for 30 min in the dark with 50 µM L-CSNO in S-nitrosothiol buffer (10 mM Tris-HCl, pH 6.0, 150 mM NaCl). The second gel was incubated for 30 min in the dark with 50 µM L-CSNO and 100 µM each S-phenyl-cysteine (L-CSφ) and S-methyl-cysteine (L-CSMe) in S-nitrosothiol buffer. Each gel was then rinsed with water and incubated in the dark with 40 µM diaminofluoroscein (DAF) 2 (Cayman Chemicals) for 10 min in the dark (RT) (24). Gels were then imaged on Chemidoc (Bio Rad; Hercules, CA) using the fluorescein setting and bands cut out for mass spectrometry proteomics (see below) that were seen without, but not with, the S-methyl and S-phenyl substituted cysteine co-incubations (21). Method 2: L-CSNO affinity chromatography L-CSNO affinity columns were prepared as follows. L-Cysteine was coupled to AminoLink Plus (Pierce/ThermoFisher; Waltham, MA) resin according to the manufacturer’s protocol. In control experiments, aminoLink Plus was used without reaction with L-cysteine. Briefly, L-cysteine was dissolved in coupling buffer A (0.1 M sodium citrate, 0.05 M sodium carbonate, pH 10) at a concentration of 100 mM and incubated with 0.4 ml, previously washed, AminoLink resin in a small (0.5 ml) column for 4 hours at room temperature. The resin was then washed with coupling buffer B (0.1 M phosphate. 0.15 M sodium chloride, pH 7.2) and incubated for 4 hours at room temperature with 100 mM cyanoborohydride in coupling buffer B. Active sites were then blocked with quenching buffer (1 M Tris-HCl, pH 7.4). Resin was then washed with 1 M NaCl and then incubated for 10 min with 30% ethyl nitrite (EtONO) in ethanol at room temperature in the dark (25). It was then washed with 100% ethanol followed by 1M NaCl. Excised mouse brain homogenate was briefly centrifuged and the supernatants were then incubated with prepared Aminolink columns for 30 min at room temperature. The columns were then washed with wash buffer and bound protein eluted with Laemmli buffer and elution buffer (0.1 M Glycine, pH 3.5). Eluate was concentrated and used for SDS-PAGE gel (TGX, BioRad; Hercules, CA) followed by Coomassie staining. Bands found in samples from + L- Cysteine columns but not in – L-cysteine columns were excised and analyzed further by MS proteomics. Biotin substitution analysis for NO-substituted cysteine’s in Kv proteins CHO cells expressing all three Kv proteins were plated on in 6 wells of a six well plate. Once confluent, cells were incubated with no treatment, 500 µM L-CSNO, or 500 µM L-CSNO plus 10mM leucine for two minutes. Wells were then washed with cold PBS and lysed in HEN buffer (250mM HEPES pH7.7, 1mM EDTA, 0.1mM Neocuproine). After biotin switch, samples went to LC-MS.
DOI: 10.25345/c55651
title: MassIVE MSV000084312 - GNPS - cyclic peptide 94NPD2 - positive mode
title: This data set was collected on a qexactive coupled to a thermo vanquish. Data was collected in a DDA fashion in positive mode. The project itself revolved around compound 94NPD2, a compound that is similar to veraguamides
DOI: 10.5061/dryad.ms33h5h/1
title: Dryad Item 10.5061/DRYAD.MS33H5H/1

description: (:tba)
DOI: 10.5061/dryad.t7109jf/1
title: Dryad Item 10.5061/DRYAD.T7109JF/1

description: (:tba)
DOI: 10.21227/0ajr-mr54
title: Experimental Data for Model Checking C++03 Programs

description: A fully-labeled C++03 program dataset provides a unique resource to evaluate model checkers in respect to language coverage. To tackle modern aspects of the C++ language, a large-scale benchmark dataset includes more than 1,500 C++03-compliant programs, which cover different aspects of the language, including exception handling, templates, inheritance, polymorphism, the standard template library, and object-oriented design.
DOI: 10.21227/h44f-fp94
title: Experimental Data for Model Checking C++03 Programs

description: A fully-labeled C++03 program dataset provides a unique resource to evaluate model checkers in respect to language coverage. To tackle modern aspects of the C++ language, a large-scale benchmark dataset includes more than 1,500 C++03-compliant programs, which cover different aspects of the language, including exception handling, templates, inheritance, polymorphism, the standard template library, and object-oriented design.
DOI: 10.25345/c51h2r
title: MassIVE MSV000084313 - GNPS - cyclic peptide 94NPD2 - negative mode
title: This data set was collected on a qexactive coupled to a Thermo vanquish. Data was collected in a DDA fashion in negative mode. The project itself revolved around compound 94NPD2, a compound that is similar to veraguamides
DOI: 10.17632/nyf9vjp7dm.1
title: Data for: Sea floor conditions in the Danish chalk sea during cyclic chalk-marl deposition – evidence from framboidal pyrite distribution in the upper Maastrichtian Rørdal Mb.

description: Spreadsheet containing all the data collected and used for this study.
DOI: 10.25345/c5wq0t
title: MassIVE MSV000084314 - GNPS - Living Data - Continuous Identification - Networks and Identification Dump
title: This is a dump of all the living data analyses, including molecular networks, clustering, and library identifications that are up to date. They are organized respectively in 5 folders: CLUSTERSUMMARY - Represents the clusters for each dataset and the associated metadata (e.g. mz, rt, and number of MS2 spectra) CLUSTERINFO - Represents the clustering enabling tracing back from the clusters to the original files and scans they came from MGF - Clustered MS/MS spectra represented as an MGF file - scan numbers correspond to cluster index in CLUSTERSUMMARY PAIRS - Molecular Networking alignment pairs representing spectral similarity IDENTIFICATIONS - Spectral library identifications reported by living data/continuous id to the latest GNPS spectral libraries
DOI: 10.3886/e101771v1-13369
title: The Social Vulnerability Index (SVI)

description: ATSDR’s Geospatial Research, Analysis & Services Program (GRASP) has created a tool to help emergency response planners and public health officials identify and map the communities that will most likely need support before, during, and after a hazardous event. The Social Vulnerability Index (SVI) uses U.S. Census data to determine the social vulnerability of every Census tract. Census tracts are subdivisions of counties for which the Census collects statistical data.The SVI ranks each tract on 14 social factors, including poverty, lack of vehicle access, and crowded housing, and groups them into four related themes. Maps of the four themes are shown in the figure below. Each tract receives a separate ranking for each of the four themes, as well as an overall ranking.
description: Smallest Geographic Unit: tract, county
DOI: 10.5281/zenodo.3404203
title: Dataset: Occupancy Detection, Tracking, and Estimation Using a Vertically Mounted Depth Sensor

description: Occupancy detection, tracking, and estimation has a wide range of applications including improving building energy efficiency, safety, and security of the occupants. As depth sensors are getting cheaper, they offer a viable solution to estimate occupancy accurately in a non-privacy invasive manner. Even though there are publicly available depth datasets, they do not consider placing the sensor in the ceiling looking downwards to estimate occupancy. We deployed four Kinect for XBOX One in four CMU classrooms and conference rooms for a period of four weeks in 2017 and collected over 6 TB of depth data. We annotate this huge dataset by labelling bounding boxes around occupants and release the annotated dataset. A sample of the dataset can be found here: https://doi.org/10.5281/zenodo.3457385
description: Appears in the Proceedings of the 2nd Workshop on Data Acquisition To Analysis (DATA '19)
DOI: 10.5281/zenodo.3404204
title: Dataset: Occupancy Detection, Tracking, and Estimation Using a Vertically Mounted Depth Sensor

description: Occupancy detection, tracking, and estimation has a wide range of applications including improving building energy efficiency, safety, and security of the occupants. As depth sensors are getting cheaper, they offer a viable solution to estimate occupancy accurately in a non-privacy invasive manner. Even though there are publicly available depth datasets, they do not consider placing the sensor in the ceiling looking downwards to estimate occupancy. We deployed four Kinect for XBOX One in four CMU classrooms and conference rooms for a period of four weeks in 2017 and collected over 6 TB of depth data. We annotate this huge dataset by labelling bounding boxes around occupants and release the annotated dataset. A sample of the dataset can be found here: https://doi.org/10.5281/zenodo.3457385
description: Appears in the Proceedings of the 2nd Workshop on Data Acquisition To Analysis (DATA '19)
DOI: 10.3886/e101771v1-13371
title: The Social Vulnerability Index (SVI)

description: ATSDR’s Geospatial Research, Analysis & Services Program (GRASP) has created a tool to help emergency response planners and public health officials identify and map the communities that will most likely need support before, during, and after a hazardous event. The Social Vulnerability Index (SVI) uses U.S. Census data to determine the social vulnerability of every Census tract. Census tracts are subdivisions of counties for which the Census collects statistical data.The SVI ranks each tract on 14 social factors, including poverty, lack of vehicle access, and crowded housing, and groups them into four related themes. Maps of the four themes are shown in the figure below. Each tract receives a separate ranking for each of the four themes, as well as an overall ranking.
description: Smallest Geographic Unit: tract, county
DOI: 10.5061/dryad.t38b3k2/1
title: Dryad Item 10.5061/DRYAD.T38B3K2/1

description: (:tba)