cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12404462.v2
title: Native-invasive seed-light competition trials

description: <b>Purpose</b>To explore the importance of interactions, light limitations, and density in annual plant species in the San Joaquin Desert.<br><b>Dates</b>Trials from October to December 2018 under controlled, high-light conditions in greenhouse at York University.<br><b>Meta-data</b>pot label label on the pot<br>census census number<br>calendar date DD/MM/YY<br>rep replicate<br>density planted number of seeds of native species (Plantago insularis, Phacelia tanacetifolia, and Salvia columbariae planted in the pot (additive study/with replacement)<br>light treatment factor Light as a factor at 2 levels: ambient light or shaded (to replicate shrub canopy) conditions brome treatment factor Exotic brome density as a factor at 2 levels: low Bromus madritensis (density of 5 per pot) and high Bromus madritensis (density of 10 per pot)<br>brome The number of germinated individuals of Bromus madritensis in the pot<br>morphometric metrics list mean values per pot per species<br>biomass for each species after drying for 48hrs at 67F<br>light measured between noon and 1pm using a Licor LI-250A light meter with a LI-190R quantum sensor in µmol of photons m-2 s-1.
DOI: 10.6084/m9.figshare.12404480.v2
title: Regularized Optimal Transport of Covariates and Outcomes in Data Recoding

description: When databases are constructed from heterogeneous sources, it is not unusual that different encodings are used for the same outcome. In such case, it is necessary to recode the outcome variable before merging two databases. The method proposed for the recoding is an application of optimal transportation where we search for a bijective mapping between the distributions of such variable in two databases. In this article, we build upon the work by Garés et al., where they transport the distributions of categorical outcomes assuming that they are distributed equally in the two databases. Here, we extend the scope of the model to treat all the situations where the covariates explain the outcomes similarly in the two databases. In particular, we do not require that the outcomes be distributed equally. For this, we propose a model where joint distributions of outcomes and covariates are transported. We also propose to enrich the model by relaxing the constraints on marginal distributions and adding an <i>L</i><sup>1</sup> regularization term. The performances of the models are evaluated in a simulation study, and they are applied to a real dataset. The code used in the computational assessment and in the simulation of test cases is publicly available on Github repository: https://github.com/otrecoding/OTRecod.jl.
DOI: 10.6084/m9.figshare.12404432.v1
title: RRaw Questionnaire Raw Data.xlsx

description: Questionnaire results presented to current dog owners or caregivers to ascertain their perspectives and opinions around feeding raw meat based diets to their canine pets. The questionnaire was formatted in Google forms and distributed via Facebook. Approval was sought and granted by University of Glasgow College of Medical, Veterinary & Life Sciences Ethics Committee for Non-Clinical Research Involving Human Participants.
DOI: 10.6084/m9.figshare.12404270
title: Crustal origin of the West Florida Terrane, and detrital zircon provenance and development of accommodation during initial rifting of the southeastern Gulf of Mexico and western Bahamas

description: Supplementary Material Table 1. Well data used in this study. Well numbers correspond to the numbered locations shown on Figure 1. Well names and locations were corrected where necessary using original documentation from the FGS database. Lithology information was taken directly from well data (mud logs, cuttings, cores, other information) as well as from publications. Bold font under the Age and Unit Relationships column indicates the preferred age in question; in some wells, additional historical age data are included for completeness; these ages are not regarded as correct based on more recent age data and correlations with nearby wells. Data sources (complete references) are included as Supplementary Material; short versions are shown at the bottom of the spreadsheet and are numbered in the Data References column in order of occurrence; the references are therefore not listed alphabetically.
DOI: 10.6084/m9.figshare.12404462.v1
title: Native-invasive seed-light competition trials

description: <b>Purpose</b>To explore the importance of interactions, light limitations, and density in annual plant species in the San Joaquin Desert.<br><b>Dates</b>Trials from October to December 2018 under controlled, high-light conditions in greenhouse at York University.<br><b>Meta-data</b>pot label label on the pot<br>census census number<br>calendar date DD/MM/YY<br>rep replicate<br>density planted number of seeds of native species (Plantago insularis, Phacelia tanacetifolia, and Salvia columbariae planted in the pot (additive study/with replacement)<br>light treatment factor Light as a factor at 2 levels: ambient light or shaded (to replicate shrub canopy) conditions brome treatment factor Exotic brome density as a factor at 2 levels: low Bromus madritensis (density of 5 per pot) and high Bromus madritensis (density of 10 per pot)<br>brome The number of germinated individuals of Bromus madritensis in the pot<br>morphometric metrics list mean values per pot per species<br>biomass for each species after drying for 48hrs at 67F<br>light measured between noon and 1pm using a Licor LI-250A light meter with a LI-190R quantum sensor in µmol of photons m-2 s-1.
DOI: 10.6084/m9.figshare.12404270.v1
title: Crustal origin of the West Florida Terrane, and detrital zircon provenance and development of accommodation during initial rifting of the southeastern Gulf of Mexico and western Bahamas

description: Supplementary Material Table 1. Well data used in this study. Well numbers correspond to the numbered locations shown on Figure 1. Well names and locations were corrected where necessary using original documentation from the FGS database. Lithology information was taken directly from well data (mud logs, cuttings, cores, other information) as well as from publications. Bold font under the Age and Unit Relationships column indicates the preferred age in question; in some wells, additional historical age data are included for completeness; these ages are not regarded as correct based on more recent age data and correlations with nearby wells. Data sources (complete references) are included as Supplementary Material; short versions are shown at the bottom of the spreadsheet and are numbered in the Data References column in order of occurrence; the references are therefore not listed alphabetically.
DOI: 10.25375/uct.12404048
title: Longitudinal assessment of illegal leopard skin use in ceremonial regalia and acceptance of faux alternatives amongst followers of the Shembe Church, South Africa

description: Binary logistic regression model of socio-economic and experiential factors predicting the likelihood of a Shembe follower possessing or desiring an authentic leopard skin.
DOI: 10.25375/uct.12404048.v1
title: Longitudinal assessment of illegal leopard skin use in ceremonial regalia and acceptance of faux alternatives amongst followers of the Shembe Church, South Africa

description: Binary logistic regression model of socio-economic and experiential factors predicting the likelihood of a Shembe follower possessing or desiring an authentic leopard skin.
DOI: 10.6084/m9.figshare.12403949
title: Untitled Item

description: Western Scheldt Dredging Polygons
DOI: 10.6084/m9.figshare.12403949.v1
title: Untitled Item

description: Western Scheldt Dredging Polygons
DOI: 10.6084/m9.figshare.12403895
title: Bioactive peptides from beans with the potential to decrease the risk of developing noncommunicable chronic diseases

description: Several studies have demonstrated that peptides obtained from the proteins of different bean species have the potential to act on therapeutic targets of noncommunicable chronic diseases or NCDs. However, peptides with great structural diversity can be obtained from the hydrolysis of proteins present in foods. Therefore, the present review had the objective of identifying, <i>in silico,</i> the possibility of obtaining peptides with potential biological activity from the storage globulin proteins of the bean species <i>Phaseolus vulgaris</i> (L.), <i>Vigna angularis</i> (Willd.), <i>Vigna radiata</i> (L.) and <i>Vigna unguiculata</i> (L.) Walp., using the UniProtKB, BIOPEP and PeptideRanker databases, as well as reviewing available research reports that showed evidence bioactive properties of peptides obtained from beans via <i>in vitro</i> assays. For all the species studied, the highest frequency of the occurrence of bioactive fragments was found for the inhibition of dipeptidyl peptidase-IV, followed by the inhibition of the angiotensin-converting enzyme and by antioxidant activity. The inhibition of the two enzymes is the therapeutic target of drugs used for type 2 diabetes mellitus (T2DM) and for hypertension, respectively, while the antioxidant activity can prevent the development of several chronic diseases related to oxidative stress.
DOI: 10.6084/m9.figshare.12403895.v1
title: Bioactive peptides from beans with the potential to decrease the risk of developing noncommunicable chronic diseases

description: Several studies have demonstrated that peptides obtained from the proteins of different bean species have the potential to act on therapeutic targets of noncommunicable chronic diseases or NCDs. However, peptides with great structural diversity can be obtained from the hydrolysis of proteins present in foods. Therefore, the present review had the objective of identifying, <i>in silico,</i> the possibility of obtaining peptides with potential biological activity from the storage globulin proteins of the bean species <i>Phaseolus vulgaris</i> (L.), <i>Vigna angularis</i> (Willd.), <i>Vigna radiata</i> (L.) and <i>Vigna unguiculata</i> (L.) Walp., using the UniProtKB, BIOPEP and PeptideRanker databases, as well as reviewing available research reports that showed evidence bioactive properties of peptides obtained from beans via <i>in vitro</i> assays. For all the species studied, the highest frequency of the occurrence of bioactive fragments was found for the inhibition of dipeptidyl peptidase-IV, followed by the inhibition of the angiotensin-converting enzyme and by antioxidant activity. The inhibition of the two enzymes is the therapeutic target of drugs used for type 2 diabetes mellitus (T2DM) and for hypertension, respectively, while the antioxidant activity can prevent the development of several chronic diseases related to oxidative stress.
DOI: 10.6084/m9.figshare.12403844
title: Competitive exclusion amongst endophytes determines Diplodia shoot blight severity on pine

description: The datasets contain the metadata, the OTU table and the ITS2 sequence of each OTU. <br>
DOI: 10.6084/m9.figshare.12403844.v1
title: Competitive exclusion amongst endophytes determines Diplodia shoot blight severity on pine

description: The datasets contain the metadata, the OTU table and the ITS2 sequence of each OTU. <br>
DOI: 10.6084/m9.figshare.12403586
title: The Quality Determination of Selected Commercial Online Purchased Edible Pomegranate Seed Oils With New Argentometric Liquid Chromatography Method

description: The number of online-purchased dietary supplements of diversified origin is exponentially increasing. Pomegranate seed oils (PSOs)—the main dietary source of conjugated linolenic acids (CLnA)—are available as dietary supplements via the Internet. PSO samples (<i>n</i> = 24) were purchased from Internet shops in Poland and China. Chromatographic techniques (gas chromatography coupled with mass spectroscopy [GC-MS] for fatty acids [FAs], liquid chromatography with fluorescence detection for tocopherols, and high-performance liquid chromatography with photodiode array detection for conjugated FAs) were used. The GC-MS method enabled the quantification of 45 FAs, which indicates its superiority to previously used methods. Argentometric liquid chromatography with pre-column mild alkaline hydrolysis for analysis of structural isomers of CLnA does not need preliminary derivatization into volatile compounds, which ensures the absence of artifacts and enables the analysis of the entire conjugated FA profile. PSO differed with tocopherols and FA profile. Some PSOs contained negligible amounts of CLnA, and because of that they did not meet the criteria of valuable, unadulterated nutraceuticals. Obtained results indicate that online purchased PSO shipped from distant places of origin could have been stored in inadequate conditions (temperature, humidity), which caused i.a. deterioration of oxidative quality. Unregulated online availability of dietary supplements of low oxidative quality and nutritive value as well as their intake may be a risk rather than a benefit for consumers. Argentometric liquid chromatography can be a simple, selective, and sensitive tool for screening of dietary supplements containing conjugated FAs and should be considered as an essential way of quality assurance.
DOI: 10.6084/m9.figshare.12403586.v2
title: The Quality Determination of Selected Commercial Online Purchased Edible Pomegranate Seed Oils With New Argentometric Liquid Chromatography Method

description: The number of online-purchased dietary supplements of diversified origin is exponentially increasing. Pomegranate seed oils (PSOs)—the main dietary source of conjugated linolenic acids (CLnA)—are available as dietary supplements via the Internet. PSO samples (<i>n</i> = 24) were purchased from Internet shops in Poland and China. Chromatographic techniques (gas chromatography coupled with mass spectroscopy [GC-MS] for fatty acids [FAs], liquid chromatography with fluorescence detection for tocopherols, and high-performance liquid chromatography with photodiode array detection for conjugated FAs) were used. The GC-MS method enabled the quantification of 45 FAs, which indicates its superiority to previously used methods. Argentometric liquid chromatography with pre-column mild alkaline hydrolysis for analysis of structural isomers of CLnA does not need preliminary derivatization into volatile compounds, which ensures the absence of artifacts and enables the analysis of the entire conjugated FA profile. PSO differed with tocopherols and FA profile. Some PSOs contained negligible amounts of CLnA, and because of that they did not meet the criteria of valuable, unadulterated nutraceuticals. Obtained results indicate that online purchased PSO shipped from distant places of origin could have been stored in inadequate conditions (temperature, humidity), which caused i.a. deterioration of oxidative quality. Unregulated online availability of dietary supplements of low oxidative quality and nutritive value as well as their intake may be a risk rather than a benefit for consumers. Argentometric liquid chromatography can be a simple, selective, and sensitive tool for screening of dietary supplements containing conjugated FAs and should be considered as an essential way of quality assurance.
DOI: 10.6084/m9.figshare.12403586.v1
title: The Quality Determination of Selected Commercial Online Purchased Edible Pomegranate Seed Oils With New Argentometric Liquid Chromatography Method

description: The number of online-purchased dietary supplements of diversified origin is exponentially increasing. Pomegranate seed oils (PSOs)—the main dietary source of conjugated linolenic acids (CLnA)—are available as dietary supplements via the Internet. PSO samples (<i>n</i> = 24) were purchased from Internet shops in Poland and China. Chromatographic techniques (gas chromatography coupled with mass spectroscopy [GC-MS] for fatty acids [FAs], liquid chromatography with fluorescence detection for tocopherols, and high-performance liquid chromatography with photodiode array detection for conjugated FAs) were used. The GC-MS method enabled the quantification of 45 FAs, which indicates its superiority to previously used methods. Argentometric liquid chromatography with pre-column mild alkaline hydrolysis for analysis of structural isomers of CLnA does not need preliminary derivatization into volatile compounds, which ensures the absence of artifacts and enables the analysis of the entire conjugated FA profile. PSO differed with tocopherols and FA profile. Some PSOs contained negligible amounts of CLnA, and because of that they did not meet the criteria of valuable, unadulterated nutraceuticals. Obtained results indicate that online purchased PSO shipped from distant places of origin could have been stored in inadequate conditions (temperature, humidity), which caused i.a. deterioration of oxidative quality. Unregulated online availability of dietary supplements of low oxidative quality and nutritive value as well as their intake may be a risk rather than a benefit for consumers. Argentometric liquid chromatography can be a simple, selective, and sensitive tool for screening of dietary supplements containing conjugated FAs and should be considered as an essential way of quality assurance.
DOI: 10.6084/m9.figshare.12403538
title: The effect of normal load oscillation amplitude on a creeping rock fracture

description: Experimental program of direct shear tests under dynamic normal load conditions <br><br>Series 1: Direct shear tests under a dynamic normal load of 0 kN.Series 2: Direct shear tests under a dynamic normal load of 10 kN.<br>Series 3: Direct shear tests under a dynamic normal load of 20 kN.<br>Series 4: Direct shear tests under a dynamic normal load of 25 kN.<br>Series 5: Direct shear tests under a dynamic normal load of 30 kN.<br>Series 6: Direct shear tests under a dynamic normal load of 40 kN.<br>
DOI: 10.6084/m9.figshare.12403538.v1
title: The effect of normal load oscillation amplitude on a creeping rock fracture

description: Experimental program of direct shear tests under dynamic normal load conditions <br><br>Series 1: Direct shear tests under a dynamic normal load of 0 kN.Series 2: Direct shear tests under a dynamic normal load of 10 kN.<br>Series 3: Direct shear tests under a dynamic normal load of 20 kN.<br>Series 4: Direct shear tests under a dynamic normal load of 25 kN.<br>Series 5: Direct shear tests under a dynamic normal load of 30 kN.<br>Series 6: Direct shear tests under a dynamic normal load of 40 kN.<br>
DOI: 10.1285/i27241904n1
title: Il liberalismo economico di Luigi Einaudi e Attilio Cabiati
DOI: 10.6084/m9.figshare.12403478
title: Supplemental materials.docx

description: The supplemental material to the manuscript, entitled "The effect of phosphogypsum and turkey litter application on the properties of eroded agrochernozem in the South Ural region (Russia)"
DOI: 10.6084/m9.figshare.12403478.v1
title: Supplemental materials.docx

description: The supplemental material to the manuscript, entitled "The effect of phosphogypsum and turkey litter application on the properties of eroded agrochernozem in the South Ural region (Russia)"
DOI: 10.6084/m9.figshare.12403454
title: The Type Locality Project: collecting genomic-quality, topotypic vouchers and training the next generation of specimen-based researchers

description: DNA evidence is often critical for taxonomic studies; however, many historical type specimens lack corresponding genetic samples, which limits contemporary molecular research questions and may restrict conservation and management decisions. We conducted a pilot Type Locality Project to collect voucher specimens and genomic-grade samples from amphibian type localities in the state of Virginia, USA. These samples can serve as proxies for cases in which obtaining genomic data from the type specimen is not possible. Undergraduate students participated in all aspects of the project including fieldwork, DNA barcoding, and incorporating specimens into the Smithsonian Institution’s National Museum of Natural History research collection. The Type Locality Project is an excellent platform for providing undergraduate students with hands-on research experience and training in taxonomy and systematics. Other institutions could easily adapt our approach to obtain genomic-quality, topotypic vouchers for other taxa and simultaneously create authentic undergraduate research experiences in field, laboratory, and natural history museum settings.
DOI: 10.6084/m9.figshare.12403445
title: data_for_sharing.pdf

description: The units of height and weight are cm and Kg respectively. SVC passage means that the tip of central venous catheter is identifiable inside the superior vena cava in chest CT exam.RA entrance means that the tip of central venous catheter is identifiable inside the right atrium of the heart in chest CT exam.TCD means the tip-to-carina distance in mm unit.TCD_XR is the value measured with simple chest X-ray film while TCD_CT is the value measured with a scout image of chest CT.Thoracic_wid is the width of thoracic cage in mm unit.TCD_H, TCD_BMI, and TCD_TW refer to TCD divided by height, BMI, and thoracic width respectively for body size correction.
DOI: 10.6084/m9.figshare.12403454.v1
title: The Type Locality Project: collecting genomic-quality, topotypic vouchers and training the next generation of specimen-based researchers

description: DNA evidence is often critical for taxonomic studies; however, many historical type specimens lack corresponding genetic samples, which limits contemporary molecular research questions and may restrict conservation and management decisions. We conducted a pilot Type Locality Project to collect voucher specimens and genomic-grade samples from amphibian type localities in the state of Virginia, USA. These samples can serve as proxies for cases in which obtaining genomic data from the type specimen is not possible. Undergraduate students participated in all aspects of the project including fieldwork, DNA barcoding, and incorporating specimens into the Smithsonian Institution’s National Museum of Natural History research collection. The Type Locality Project is an excellent platform for providing undergraduate students with hands-on research experience and training in taxonomy and systematics. Other institutions could easily adapt our approach to obtain genomic-quality, topotypic vouchers for other taxa and simultaneously create authentic undergraduate research experiences in field, laboratory, and natural history museum settings.
DOI: 10.6084/m9.figshare.12403445.v1
title: data_for_sharing.pdf

description: The units of height and weight are cm and Kg respectively. SVC passage means that the tip of central venous catheter is identifiable inside the superior vena cava in chest CT exam.RA entrance means that the tip of central venous catheter is identifiable inside the right atrium of the heart in chest CT exam.TCD means the tip-to-carina distance in mm unit.TCD_XR is the value measured with simple chest X-ray film while TCD_CT is the value measured with a scout image of chest CT.Thoracic_wid is the width of thoracic cage in mm unit.TCD_H, TCD_BMI, and TCD_TW refer to TCD divided by height, BMI, and thoracic width respectively for body size correction.
DOI: 10.6084/m9.figshare.12403226
title: Data for "Understanding the Interplay of Surface Structure and Work Function in Oxides: A Case Study on SrTiO3"

description: This data set contains all the data for the following paper:<br>Understanding the Interplay of Surface Structure and Work Function in Oxides: A Case Study on SrTiO3<br>Contact author: Dane Morgan
DOI: 10.6084/m9.figshare.12403226.v1
title: Data for "Understanding the Interplay of Surface Structure and Work Function in Oxides: A Case Study on SrTiO3"

description: This data set contains all the data for the following paper:<br>Understanding the Interplay of Surface Structure and Work Function in Oxides: A Case Study on SrTiO3<br>Contact author: Dane Morgan
DOI: 10.6084/m9.figshare.12403109
title: Initial data for P. sikkimensiss

description: Phenotypic data from both population experiments .