cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3h3f3380
title: Data from: Sustained high levels of neuregulin-1 in the longest-lived rodents; a key determinant of rodent longevity

description: Naked mole-rats (Heterocephalus glaber), the longest-lived rodents, live
 7-10 times longer than similarly–sized mice and exhibit normal activities
 for ∼75% of their lives. Little is known about the mechanisms that allow
 them to delay the aging process and live so long. Neuregulin-1 (NRG-1)
 signaling is critical for normal brain function during both development
 and adulthood. We hypothesized that long-lived species will maintain
 higher levels of NRG-1 and that this contributes to their sustained brain
 function and concomitant maintenance of normal activity. We monitored the
 levels of NRG-1 and its receptor ErbB4 in H. glaber at different ages
 ranging from 1 day to 26 years and found that levels for NRG-1 and ErbB4
 were sustained throughout development and adulthood. In addition, we
 compared seven rodent species with widely divergent (4-32y) maximum
 lifespan potential (MLSP) and found that at a physiologically-equivalent
 age, the longer-lived rodents had higher levels of NRG-1 and ErbB4.
 Moreover, phylogenetic independent contrast analyses revealed that this
 significant strong correlation between MLSP and NRG-1 levels was
 independent of phylogeny. These results suggest that NRG-1 is an important
 factor contributing to divergent species MLSP through its role in
 maintaining neuronal integrity.
description: Phylogeny_dataMultiple sequence alignment in Nexus formatComplete_treeML phylogenetic tree obtained with PAUP* under the GTR+G+I model of sequence evolution using 5 nuclear gene and 52 species mainly rodentsTree_used_in_trait_analysesPhylogenetic tree used in trait analysis, branch length were derived from the complete tree
DOI: 10.5281/zenodo.18381814
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hanna Czeczott, http://www.wikidata.org/entity/Q5891798. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5891798
DOI: 10.5281/zenodo.8288149
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Hanna Czeczott, http://www.wikidata.org/entity/Q5891798. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5891798
DOI: 10.5061/dryad.bn27c
title: Data from: Selection for territory acquisition is modulated by social network structure in a wild songbird

description: The social environment may be a key mediator of selection that operates on
 animals. In many cases, individuals may experience selection not only as a
 function of their phenotype, but also as a function of the interaction
 between their phenotype and the phenotypes of the conspecifics they
 associate with. For example, when animals settle after dispersal,
 individuals may benefit from arriving early, but, in many cases, these
 benefits will be affected by the arrival times of other individuals in
 their local environment. We integrated a recently described method for
 calculating assortativity on weighted networks, which is the correlation
 between an individual's phenotype and that of its associates, into an
 existing framework for measuring the magnitude of social selection
 operating on phenotypes. We applied this approach to large-scale data on
 social network structure and the timing of arrival into the breeding area
 over three years. We found that late-arriving individuals had a reduced
 probability of breeding. However, the probability of breeding was also
 influenced by individuals’ social networks. Associating with late-arriving
 conspecifics increased the probability of successfully acquiring a
 breeding territory. Hence, social selection could offset the effects of
 non-social selection. Given parallel theoretical developments of the
 importance of local network structure on population processes, and
 increasing data being collected on social networks in free-living
 populations, the integration of these concepts could yield significant
 insights into social evolution.
description: Farine_Sheldon_dataInput data for social selection analysis
DOI: 10.5061/dryad.f1f740n
title: Data from: Eco-evolutionary dynamics of sexual selection and sexual conflict

description: 1.The research framework of eco‐evolutionary dynamics is increasing in
 popularity, as revealed by a steady stream of review articles and a recent
 and influential book, but primary empirical research is lagging behind.
 Moreover, the few empirical case studies demonstrating eco‐evolutionary
 dynamics might not be entirely representative. 2.Much current research on
 eco‐evolutionary dynamics is focused on how ecological interactions lead
 to natural selection on phenotypic traits (“eco‐evo”), and in turn how the
 evolutionary change in such traits feed back on ecological dynamics
 (“evo‐eco”). A key feature of eco‐evolutionary dynamics is thus a feedback
 loop between ecology (e. g. population dynamics) and evolution (i. e.
 genetic change). 3.In contrast to previous research on eco‐evolutionary
 dynamics driven by natural selection, the role of eco‐evolutionary
 feedbacks in sexual selection and sexual conflict are largely unknown.
 Here, I review theory and the limited empirical evidence in this area and
 identify some promising future lines of research. 4.I update a past review
 on contemporary evolution of secondary sexual traits in natural
 populations and formulate six explicit and rigorous criteria for
 contemporary evolution of secondary sexual traits by natural or sexual
 selection or sexual conflict. I then discuss the other key prediction of
 eco‐evolutionary dynamics (i. e. evolution by sexual selection or sexual
 conflict shapes ecological dynamics). My overview reveal that our current
 knowledge in this area is limited and mainly come from theoretical models
 and laboratory experiments. 5.A major challenge in eco‐evolutionary
 dynamics is therefore to link ecological and population dynamics with
 sexual selection and sexual conflict. This is not an easy task but might
 be possible with carefully chosen study systems and methods.
description: AppendixS1: List of
 published papers from a WoS-searchList of studies from a
 search through Web of Science Core Collection on April 3 2018, using the
 three search terms “eco-evolutionary dynamics”, “eco-evolutionary dynamics
 and sexual selection” and “eco-evolutionary dynamics and sexual conflict”.
 showed that the term eco-evolutionary dynamics first appeared in a
 publication in 1991, and remained quite rare in the literature until after
 2011, after which it rapidly increased (Fig. S1). The current literature
 encompasses 566 articles (Fig. S1), which have been cited 10 679
 times.AppendixS1FunctionalEcology2018ErikSvensson.xlsFigure S1: Number of WoS-studies in relation to year of publicationThe number of publications per year from a search in Science Citation Core Collection, referring to “eco-evolutionary dynamics”, “eco-evolutionary dynamics and sexual selection” and “eco-evolutionary dynamics and sexual conflict”. The three different categories are shown in different shadings. The identity of all the different publications (total of 566 from 1991-2017) are shown in Table S1.FigS1FunctionalEcology2018ErikSvensson.pdf
DOI: 10.5061/dryad.f6sj385
title: Data from: Longitudinal cognitive and biomarker changes in dominantly inherited Alzheimer disease

description: Objective: To assess the onset, sequence and rate of progression of
 comprehensive biomarker and clinical measures across the spectrum of
 Alzheimer disease using the Dominantly Inherited Alzheimer Network (DIAN)
 study and compare these to cross-sectional estimates. Methods: We
 conducted longitudinal clinical, cognitive, cerebrospinal fluid (CSF) and
 neuroimaging assessments (mean of 2.7 (+/- 1.1) visits) in 217 DIAN
 participants. Linear mixed effects models were used to assess changes in
 each measure relative to individuals’ estimated years to symptom onset and
 to compare mutation carriers and non-carriers. Results: Longitudinal
 amyloid-ß measures changed first (starting 25 years before estimated
 symptom onset), followed by declines in measures of cortical metabolism
 (approximately 7-10 years later), then cognition and hippocampal atrophy
 (approximately 20 years later). There were significant differences in the
 estimates of CSF p-tau181 and tau, with elevations from cross-sectional
 estimates preceeding longitudinal estimates by over 10 years; further,
 longitudinal estimates identifed a significant decline in CSF p-tau181
 near symptom onset as opposed to continued elevations. Conclusion: These
 longitudinal estimates clarify the sequence and temporal dynamics of
 presymptomatic pathological changes in ADAD –information critical to a
 better understanding of the disease. The pattern of biomarker changes
 identified here also suggests that, if left unchecked, once β-amyloidosis
 begins additional non-β-amyloid-pathologies may begin to develop less than
 10 years later, but more than 15 years before sympotom onset, an important
 consideration for interventions meant to alter the disease course.
description: Supplemental
 datae
 table 1, 2 and figure one. The supplemental data includes detailed
 information on the statistical models chosen and model fit as well as
 yearly comparisons between mutation carriers and non-carriers across the
 estimated years of symptom onset (EYO).Supplemental
 Materials_Final_Clean.docx
DOI: 10.5061/dryad.s17s3d5r
title: Data from: Patterns of pollen flow in a dense population of the insect-pollinated canopy tree species Castanopsis sieboldii

description: Insect pollinations of tree species with high-density populations have
 rarely been studied. Since the density of adults can affect effective
 pollen dispersal, short-distance pollination, even by insects, may
 frequently occur in high-density populations. To test this prediction, we
 investigated pollination patterns in a high-density population of the
 insect-pollinated canopy tree species Castanopsis sieboldii by paternity
 analysis using genotypes at 8 microsatellite loci of 145 adult trees and
 439 seeds from 11 seed parents in a 4-ha plot. We then explored their
 genetic effects on the population by calculating other population genetics
 parameters. Although C. sieboldii has high potential for long-distance
 dispersal of pollen (as indicated by a fat-tailed dispersal kernel), the
 cumulative pollination at the local scale was spatially limited and
 strongly dependent on the distance between parents due to the high density
 of adults. Genetic diversity estimates for pollen pools accepted by each
 seed parent converged on a maximum as the effective number of pollen
 parents increased. The genetic diversity of pollen pool bulked over all
 the seed parents from inside the plot did not differ from that of the
 total pollen pools. Therefore, although pollen flow from distant pollen
 parents may help to maintain the genetic diversity of offspring, pollen
 parents neighboring seed parents may be the main contributors to the
 genetic diversity of the offspring at the seed stage.
description: DataBaseEcological and genotype data of adults and seeds in the Castanopsis cuspidata population.
DOI: 10.5061/dryad.q34fp
title: Data from: Forest snail faunas from Crimea (Ukraine), an isolated and incomplete Pleistocene refugium

description: The land snail faunas of 26 forest sites and two open rocky sites in the
 Crimean Mountains were sampled in 2011. Of the 40 species found within the
 forests (about half the known fauna of Crimea as a whole), 28 were species
 with wide western Palaearctic distributions, and only eight were endemic
 to Crimea. While there were significant differences in the faunas of
 different sampling areas, these seemed to be a consequence of ecological
 differences among them rather than a product of geographical isolation and
 differentiation. Endemic species were large, and not entirely restricted
 to forest; known endemics not found in these forests are mainly typical of
 more open habitats. There is no local radiation of small species living in
 damp forest litter, as with Leiostyla species in the Transcaucasian forest
 refugium, and families such as the Clausiliidae with many endemic forest
 species in both Transcaucasia and the Carpathians are sparsely
 represented. The one endemic clausiliid genus, Mentissa, occurs in open as
 well as in wooded habitats. The present faunas are rather poor considering
 the soil conditions and climate, and the forests hold widespread species
 often associated with open habitats elsewhere. While there is evidence
 that these mountains provided a refuge for many animals and plants during
 glacial episodes further north, the forest snail fauna suggests that full
 forest cover did not survive throughout the Pleistocene. Rather, the
 present fauna contains endemics that survived in other habitats and
 widespread species with good powers of passive dispersal.
description: Appendix
 S1Field data on location
 and habitat of 28 samples of land snails. The numbers and identities of
 the species of snail found at each of these sites, with the authorities
 for each name.
DOI: 10.5281/zenodo.18381815
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Doris Mable Cochran, http://www.wikidata.org/entity/Q521351. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q521351
DOI: 10.5281/zenodo.8288053
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Doris Mable Cochran, http://www.wikidata.org/entity/Q521351. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q521351
DOI: 10.5061/dryad.q7810
title: Data from: Revision of the New World species of the millipede-parasitic genus Myriophora Brown (Diptera: Phoridae)

description: The New World species of the millipede-parasitic genus Myriophora Brown
 are revised. Sixty-five species based on the female sex are treated,
 mostly from the Neotropical Region. Of these, fifty-seven are new to
 science: Myriophora alexandrae sp. nov., Myriophora alienipennis sp. nov.,
 Myriophora angustifascia sp. nov., Myriophora annetteae sp. nov.,
 Myriophora annulata sp. nov., Myriophora bicuspidis sp. nov., Myriophora
 bilsae sp. nov., Myriophora bimaculata sp. nov., Myriophora borealis sp.
 nov., Myriophora brevitarsus sp. nov., Myriophora browni sp. nov. Hash,
 Myriophora brunneipleuron sp. nov., Myriophora communis sp. nov.,
 Myriophora curvata sp. nov., Myriophora curvicacumen sp. nov., Myriophora
 dennisoni sp. nov., Myriophora discalis sp. nov., Myriophora diversa sp.
 nov., Myriophora dividida sp. nov., Myriophora dolionatis sp. nov.,
 Myriophora flavicosta sp. nov., Myriophora fuscidorsum sp. nov.,
 Myriophora gigantea sp. nov., Myriophora gobaleti sp. nov., Myriophora
 harwoodi sp. nov., Myriophora hebes sp. nov., Myriophora heratyi sp. nov.,
 Myriophora inaequalisetarum sp. nov., Myriophora infirmata sp. nov.,
 Myriophora jeffersoni sp. nov., Myriophora kerri sp. nov., Myriophora
 kungae sp. nov., Myriophora longisetarum sp. nov., Myriophora luteitergum
 sp. nov., Myriophora magnilabellum sp. nov., Myriophora misionesensis sp.
 nov., Myriophora nigra sp. nov., Myriophora nigralinea sp. nov.,
 Myriophora obscuritergum sp. nov., Myriophora pallida sp. nov., Myriophora
 parva sp. nov., Myriophora pectinata sp. nov., Myriophora perpendicularis
 sp. nov., Myriophora plana sp. nov., Myriophora porrasae sp. nov.,
 Myriophora porrecta sp. nov., Myriophora reminatis sp. nov., Myriophora
 scopulata sp. nov., Myriophora simplex sp. nov., Myriophora sinesplendida
 sp. nov., Myriophora smithi sp. nov., Myriophora spicaphora sp. nov.,
 Myriophora spicaticonus sp. nov., Myriophora tenuis sp. nov., Myriophora
 uruguaiensis sp. nov., Myriophora vancouverensis sp. nov., Myriophora
 wellsorum sp. nov. The first key to the species of Myriophora is provided.
description: Material
 ExaminedCollection information
 for the specimens examined in the taxonomic revision of
 Myriophora.ALL MYRIO AUTOMATEX
 1.xlsx
DOI: 10.5061/dryad.01v62
title: Data from: Differential host responses to parasitism shape divergent fitness costs of infection

description: Fitness costs of infection are fundamental to understanding the ecology
 and evolution of host-parasite interactions. However, these costs, and
 particularly their underlying mechanisms, are challenging to evaluate in
 wild populations. Here, we quantified total and species-specific costs of
 gastrointestinal worms on African buffalo, by combining the power of an
 anthelmintic treatment experiment that perturbed the entire worm community
 with a longitudinal study that tracked the two most dominant community
 members. Reducing all worms improved buffalo body condition, which was
 strongly associated with increases in survival and reproduction.
 Species-specific analyses revealed that condition-mediated fitness costs
 of infection differed between parasite species. Hosts that gained the
 blood-sucking worm Haemonchus, lost condition, and this loss may have been
 mediated by reductions in forage intake. Hosts that resisted Haemonchus by
 elevating IL-4 and eosinophil immune defences were able to reduce their
 parasite loads and gain back condition. Conversely, hosts that gained
 Cooperia, a less pathogenic worm, gained condition and had higher survival
 and reproductive success. Elevating immune defences had no effect on
 Cooperia abundance. Coupled with the positive relationship observed
 between Cooperia and host condition, our data suggest that hosts might
 benefit from tolerating Cooperia rather than incurring the costs of
 resistance. Overall, our study reveals that differential host responses to
 parasites play a key role in mediating the costs of infection.
description: Data for Differential
 host responses to parasitism - Functional EcologyThis file contains data
 from a 4-year deworming experiment on African buffalo (Syncerus caffer) in
 Kruger National Park, South Africa. Please see the accompanying README
 file for heading descriptions and units and the Functional Ecology
 manuscript for experimental design and methods.Buffalo data - for FE
 dryad.csv
DOI: 10.5061/dryad.d5r16
title: Data from: Pioneer cells established by the [SWI+] prion can promote dispersal and out-crossing in yeast

description: To thrive in an ever-changing environment, microbes must widely distribute
 their progeny to colonize new territory. Simultaneously, they must evolve
 and adapt to the stresses of unpredictable surroundings. In both of these
 regards, diversity is key—if an entire population moved together or
 responded to the environment in the same way, it could easily go extinct.
 Here, we show that the epigenetic prion switch [SWI+] establishes a
 specialized subpopulation with a “pioneer” phenotypic program in
 Saccharomyces cerevisiae. Cells in the pioneer state readily disperse in
 water, enabling them to migrate and colonize new territory. Pioneers are
 also more likely to find and mate with genetically diverse partners, as
 inhibited mating-type switching causes mother cells to shun their own
 daughters. In the nonprion [swi−] state, cells instead have a “settler”
 phenotype, forming protective flocs and tending to remain in their current
 position. Settler cells are better able to withstand harsh conditions like
 drought and alkaline pH. We propose that these laboratory observations
 reveal a strategy employed in the wild to rapidly diversify and grant
 distinct, useful roles to cellular subpopulations that benefit the
 population as a whole.
description: Data graphed in Newby
 and Lindquist 2017The data used to prepare
 graphs is given in a Microsoft Excel file. Each worksheet name indicates
 the figure that was generated from the data given.Flow cytometry gating
 strategiesThe gating strategy for
 each flow cytometry experiment is described, with accompanying pictures of
 gates.
DOI: 10.5061/dryad.8s586
title: Data from: Semicircular canals in Anolis lizards: ecomorphological convergence and ecomorph affinities of fossil species

description: Anolis lizards are a model system for the study of adaptive radiation and
 convergent evolution. Greater Antillean anoles have repeatedly evolved six
 similar forms or ecomorphs: crown-giant, grass-bush, twig, trunk,
 trunk-crown and trunk-ground. Members of each ecomorph category possess a
 specific set of morphological, ecological and behavioural characteristics
 which have been acquired convergently. Here we test whether the
 semicircular canal system—the organ of balance during movement—is also
 convergent among ecomorphs, reflecting the shared sensory requirements of
 their ecological niches. As semicircular canal shape has been shown to
 reflect different locomotor strategies, we hypothesized that each Anolis
 ecomorph would have a unique canal morphology. Using three-dimensional
 semilandmarks and geometric morphometrics, semicircular canal shape was
 characterized in 41 Anolis species from the Greater Antilles and the
 relationship between canal shape and ecomorph grouping, phylogenetic
 history, size, head dimensions, and perch characteristics was assessed.
 Further, canal morphology of modern species was used to predict the
 ecomorph affinity of five fossil anoles from the Miocene of the Dominican
 Republic. Of the covariates tested, our study recovered ecomorph as the
 single-most important covariate of canal morphology in modern taxa;
 although phylogenetic history, size, and head dimensions also showed a
 small, yet significant correlation with shape. Surprisingly, perch
 characteristics were not found to be significant covariates of canal
 shape, even though they are important habitat variables. Using posterior
 probabilities, we found that the fossil anoles have different semicircular
 canals shapes to modern ecomorph groupings implying extinct anoles may
 have been interacting with their Miocene environment in different ways to
 modern Anolis species.
description: Supplementary Data and
 codeCanal data and R code to
 produce the results of Dickson et al.Anolis
 canals.zip