cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.903751.v2
title: Structured eligibility criteria of breast cancer clinical trials

description: This data set contains semi structured eligibility criteria of nearly 300 breast cancer trials from ClinicalTrials.gov. The structured representation consists of the detected in text: patterns (e.g. "No prior ()"), UMLS concepts and normalized measurements. The criteria are classified according to several dimensions which describe the meta information of temporal status, time independent status, specification type and medical content. The metadata can be used to define fine grained queries. Additionally, some criteria are interlinked witch each other by a transitive relation "isMoreStrict/isMoreRelaxed" - indicating which criterion can in theory be satisfied by a larger number of patients. The method for criteria structuring has been described in [1]. The method for creating a library and comparing the restrictiveness of criteria has been described in [2]. An interactive visualization of the library, prepared by Rinke Hoekstra can be accessed at http://semweb.cs.vu.nl/eligibility [3]. The library can be queried using the following SPARQL endpoint http://semweb.cs.vu.nl:8080/openrdf-sesame/repositories/ct [4] Example of sparql queries are available at [5] . Enclosed examples allow to i.e.: 1.Find criteria that mention a conceptwith a specific UMLS CUI e.g.“C0029925”(OvarianCarcinoma) 2. Find trials with criteria that match a specific pattern e.g. “At least () since prior ()” 3. Displays a list of all defined patterns 4. Find trials with criteria that mention a specific drug e.g. “C0039286” (Tamoxifen) in a specific context e.g. as a forbidden prior treatment 5. Find trials with criteria that are more relaxed than a provided one e.g. “bilirubin less than 1.5”
DOI: 10.3535/2hb-3tm-b2q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d2r-j5k-e5l
title: Asterolepis Razowski, 1964

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.154188.v1
title: Data from Progressive spatial processing deficits in a mouse model of the fragile X premutation.

description: Raw data for Hunsaker, M. R., Wenzel, H. J., Willemsen, R., & Berman, R. F. (2009). Progressive spatial processing deficits in a mouse model of the fragile X premutation. Behavioral Neuroscience. 123(6), 1315-1324.
DOI: 10.6084/m9.figshare.25785309.v2
title: Supporting Information S1_TC_2024.docxSupporting Information for Thermo-tectonic history of the Qilian Shan and adjacent areas: New insights from apatite U-Pb and fission track thermochronologySupporting Information

description: Supporting Information for
<strong>Thermo-tectonic history of the Qilian Shan and adjacent areas: New insights from apatite U-Pb and fission track thermochronology</strong>
DOI: 10.6084/m9.figshare.26790520.v1
title: Results of protein sequence recognition with PowerNovo tool for patients with Schizophrenia and a control group

description: Mass-spectrometry results processed with PowerNovo toolSource data: https://www.ebi.ac.uk/pride/archive/projects/PXD016297
DOI: 10.3535/kph-x0k-bj6
title: †Hesperorthis Schuchert & Cooper, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pac-a6c-1fq
title: †Tropidodiscus Meek & Worthen, 1866

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rak-gh3-3r7
title: †Dianulites petropolitanus Dybowski, 1877 ()

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7nw-dr0-hcp
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tpm-6np-tqs
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hlf-wtb-pmj
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25565466.v2
title: A survey of Ephedra californica at Carrizo National Monument, CA, in 2016

description: A survey of the ecology and morphology of Ephedra California in 2016.xyz is the longest wide, perpendicular width to that axis and y is the height.IR is infrared temp.Annual plants associated with shrub and also paired opens in 0.5m quadrat recorded.<br>Handheld soil moisture probe used.<br>
DOI: 10.17632/5r42srsxn2
title: Herbaceous rhizosphere microbial diversity and community structure along the altitudinal gradient are regulated by climatic and geographical factors and soil ecological stoichiometry

description: Rhizosphere soil moisture (SM) was measured by constant weight after drying. The rhizosphere soil pH was measured by an electrode pH meter (Leici, PHS25, China). Electrical conductivity (EC) was determined by the leaching electrode method (Leici, DDS-11A, China). The water/soil ratio was 2.5:1. Soil organic carbon (SOC) was quantified by the dichromate oxidation method. Total nitrogen (TN) was quantified using the Kjeldahl digestion method. Total phosphorus (TP) was quantified using the molybdenum antimony anticolorimetry method.
For all rhizosphere soil samples, Illumina-based absolute quantification sequencing was used to measure microbial diversity, as detailed below: the DNA from each soil sample was extracted using the FastDNA® SPIN Kit for Soil DNA Extraction (MP Biomedicals, Santa Ana, CA, USA). The extracted DNA was purified using the DNeasy PowerClean Pro Cleanup Kit (Qiagen, Valencia, CA, USA). Polymerase chain reaction (PCR) was performed using the ABI 2720 Thermal Cycler (Thermo Fisher Scientific, USA). The amplification products were identified using agarose gel electrophoresis, and three parallel PCR amplification products of each soil sample were purified and recovered using the Agencourt AMPure XP system gel recovery kit (Beckman Coulter, Brea, CA, USA). Purified amplicons were blended in equivalent measures, and sequencing was performed on the Illumina NovaSeq platform at Genesky Biotechnologies, Inc. (Shanghai, China).
DOI: 10.3535/54l-axs-lc7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/edp-ptt-4p4
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/23x-dd9-j4l
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ha4-b09-vc9
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14751753.v4
title: ARCTIC MARINE FOREST DISTRIBUTION MODELS SHOWCASE SEVERE NET LOSSES AND TEMPERATE SUCCESSION UNDER CLIMATE CHANGE

description: Our main objective was to investigate potential gains and losses in northern hemisphere marine forest habitat along temperate and Arctic coastlines under different climate change scenarios. In particular, we sought to investigate anticipated responses according to three ecosystem distribution categories: marine forests restricted to the Arctic (i.e. oceanic benthic waters with a mean average annual temperature of ca. &lt;5oC), widely distributed species occurring in temperate and Arctic waters, and species restricted to cold and warm temperate waters with no current range in the Arctic. <br>The datasets provided here include the occurrence records for training models, area calculations for both threshold and probabilistic predictions for each species and each climate change scenario, and the maxent predictions for each species, including the stacked predictions, and for each climate change scenario.<br><br>v2 provides updated models using long term min and max benthic temperature layers, which was done to better reflect longer term temperature trends. The original models (which used absolute min and max benthic temperature layers) are provided in the zip folder "old_models_absolute_min_max_temp.zip". Also included are the accompanying publication figures for the old models. Updated figures will be featured in the final publication of this work. Model performance metrics and MaxEnt output (including response curves) are also provided in v2.<br>For threshold predictions, yellow=occurrence, blue=no occurrence. For probabilistic predictions, pink-&gt;blue-&gt;green-&gt;orange-&gt;red refers to 1.0-&gt;0 probability of occurrence.
DOI: 10.6084/m9.figshare.7038338.v1
title: Geometry Optimized Solutions from Theoretically optimal forms for very long-span bridges under gravity loading

description: Details of geometry optimized solutions
DOI: 10.17632/dp63xmbz38
title: Dateset_Microbial Ectoenzyme Activities in the Water Column of the Mariana Trench

description: It contains the microbial ectoenzyme activities (aminopeptidase, α-glucosidase and β-glucosidase) of the niskin and pressure-retaining samples measured under atmospheric and in situ pressure conditions.
DOI: 10.3535/aw9-52w-24e
title: †Orbipora distincta (Eichwald, 1829)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gkj-e5f-ghj
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/p8cn8srfvh
title: Multiple, short protein binding motifs in ORC1 and CDC6 control the initiation of DNA replication
DOI: 10.3535/tlv-xyf-r0f
title: Cyathophyllum articulatum Hisinger

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zm7-eaz-e5b
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3119701
title: Dealing with discordance: a novel approach for analysing U–Pb detrital zircon datasets

description: Table S1
DOI: 10.6084/m9.figshare.5309662.v1
title: The composition of a protein aggregate modulates the specificity and efficiency of its autophagic degradation

description: The mechanism underlying autophagic degradation of a protein aggregate remains largely unknown. A family of receptor proteins that simultaneously bind to the cargo and the Atg8 family of autophagy proteins (such as the MAP1LC3/LC3 subfamily) has been shown to confer cargo selectivity. The selectivity and efficiency of protein aggregate removal is also modulated by scaffold proteins that interact with receptor proteins and ATG proteins. During <i>C. elegans</i> embryogenesis, autophagic clearance of the cargoes PGL-1 and PGL-3 requires the receptor protein SEPA-1 and the scaffold protein EPG-2. SEPA-1 and EPG-2 also form aggregates that are degraded by autophagy. Here we investigated the effect of composition and organization of PGL granules on their autophagic degradation. We found that depletion of PGL-1 or PGL-3 facilitates the degradation of SEPA-1 and EPG-2. Removal of EPG-2 is also promoted when SEPA-1 is absent. Depletion of PGL-1 or PGL-3 renders the degradation of SEPA-1 independent of EPG-2. We further showed that overexpression of SEPA-1 or EPG-2 as well as SQST-1 or EPG-7 (scaffold protein), which belong to different classes of aggregate, has no evident effect on the degradation of the other type. Our results indicate that the composition and organization of protein aggregates provide another layer of regulation to modulate degradation efficiency.
DOI: 10.3535/2rp-88j-d4c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7hy-nlx-g8e
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n0y-89x-xcm
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.960037.v1
title: Discharge and waterlevel data

description: Discharge and waterlevel data for the Lunterse beek dataset
DOI: 10.3535/94q-cz3-213
title: †Homoeospira Hall & Clarke, 1893

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jxm-mdf-h6v
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28095170.v1
title: surface mesh data

description: This dataset provides four kind of freefom surfaces: a unit sphere, a fan disk, a f-theta lens and a block surface with their noisy version.
DOI: 10.6084/m9.figshare.9259094.v1
title: Table S6

description: Orthogroup (protein cluster) analysis based on all 13 genomes from Loki- and Thorarchaeota. Functional annotation for each of the orthogroups was predicted based on the majority rule of the proteins within each orthogroup.
DOI: 10.3535/3bb-xxp-ew4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pvf-qfl-xdn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22097993.v3
title: ECOPICS_MX_Soil profile data at the pit level

description: ECOPICS Project : Profile Soil Data Field campaign Abril 2017 to March 2018 Last modification : April 2022 by Beatriz E. Marín Castro and Christina D. Siebe The description of the profiles was made according to the description manual of Siebe C., Jahn R. and K. Stahr. 2016. Manual para la descripción y evaluación ecológica de suelos en el campo. Sociedad Mexicana de la Ciencia del Suelo A.C. <em>Raw physicochemical data:</em> <br> Contains the soil data at the pit level Units of physicochemical properties :Ntot (%), MO (%), pH water, Phosphorus for Bray-Kurtz, (mg/kg), CEC (cmol/kg), Base saturation estimade and determined in laboratory (%), Fe, Al and Si for Oxides extracted with ammonium oxalate (mg/g) These data have to be correlated with the altitudinal gradient analysis. The pits, one per altitudinal level, samples were taken from different soil horizons.
DOI: 10.3535/ra6-50j-x8e
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xer-mab-b6p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25595220.v1
title: Prompt para problematizar la realidad con IA

description: Un <i>prompt</i> genérico para usarse con IA generativas de texto, agregando las propias situaciones de la realidad del aula, escuela o comunidad, y obteniendo preguntas detonadoras que sirven como referente para el diálogo en la problematización.
DOI: 10.3535/aap-vyc-amq
title: †Euomphalopterus C. F. Roemer, 1876

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y8q-r5t-k4s
title: Conularia sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25800868.v1
title: Chromosome-level genome assembly of<i> </i>Oriental chestnut<i> </i>gall wasp (<i>Dryocosmus kuriphilus</i>) gene prediction update

description: <i>Dryocosmus kuriphilus</i>, commonly known as the chestnut gall wasp, belonging to the family Cynipidae and native to China. It is a highly invasive insect species causing serious damage to chestnut trees and rapidly spread to various continents, including Europe, North America, and Oceania. The <i>D. kuriphilus</i> has become one of the important pests of chestnut plants in the world and is listed as the quarantine object by the European and Mediterranean Plant Protection Organization (EPPO). In this study, we used PacBio long reads, Illumina short reads, and Hi-C sequencing data to construct a chromosome level of <i>D. kuriphilus</i> genome. The assembled genome includes 14,729 contigs with a total length of 2.28 Gb, a contig N50 of 0.8 Mb. With Hi-C technology, 2.17 Gb (95.02%) of contigs was anchored and oriented into the 10 pseudochromosomes with the scaffold N50 of 198.8 Mb and the scaffold N90 of 158.8 Mb. In total, 21,584 protein-coding genes were predicted in the assembled <i>D. kuriphilus</i> genome as the reference gene set. A total of 1.82 Gb repeats (occupying 79.7 % of the genome), including 1.42 Gb of transposable elements and 0.40 Gb of tandem repeats, were identified in <i>D. kuriphilus</i> genome. In the evaluation of completeness, the BUSCO analysis determined a level of 98.1% completeness for the assembled genome sequences based on insecta database (OrthoDB version 10). The high-quality genome assembly of <i>D. kuriphilus</i> will not only provide a valuable reference for the study of its evolutionary history and genetic structure, but also facilitate the research of host-pest interactions and invasiveness. Moreover, this genome assembly will promote in the development of effective management strategies to mitigate the economic and ecological impacts of this invasive pest on chestnut trees and ecosystems.
DOI: 10.3535/rgr-z8n-ylr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yzr-x2k-n5p
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lwa-hr9-mm1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sah-mxf-yn5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19723087.v1
title: Dataset and code for Guiraud et al., "Discrimination of edge orientation by bumblebees"

description: Supporting material for the publication: <br> Marie Guiraud, Mark Roper, Stephan Wolf, Joseph L. Woodgate, Lars Chittka. 2022. Discrimination of edge orientation by bumblebees. <br> Dataset and Matlab code used for all analyses presented in the publication. <br> This study was supported by Human Frontier Science Program grant (RGP0022/2014; www.hfsp.org) to L.C.; Engineering and Physical Sciences Research Council program grant Brains-on-Board (EP/P006094/1; epsrc.ukri.org) to L.C.; European Research Council grant SpaceRadarPollinator (339347; erc.europa.eu) to L.C.; and a Royal Society Wolfson Research Merit Award (royalsociety.org) to L.C. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. There was no additional external funding received for this study.
DOI: 10.6084/m9.figshare.28631576.v1
title: Soil Erosion, SOC and TN data along a Cultivated Toposequence in NE China

description: Soil erosion rate, SOC and TN were investigated along a typical cultivated toposequence in the black soil region of northeast (NE) China.
DOI: 10.3535/082-a5y-zgg
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8cm-qab-w98
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23676885.v1
title: C input-env.xlsxC input-env

description: soil properties under plant removal and litter manipulations
DOI: 10.6084/m9.figshare.24866442.v1
title: Pan-SVs

description: The Pan-SVs of 711 tetraploid cotton acceesions based on the cotton graph pangenome
DOI: 10.11583/dtu.28390181.v1
title: Trans experiment post-processed data

description: This is a .mat file that contains the wind speed and coherence measured by the lidars as part of the Trans experiment in the FLOW project as the theoretical coherence predicted by the Syed-Mann model (2024).The .xlsx file is the metadata which gives information like the mean wind speed, stability, etc. For an overview of how to handle the data, look at Example.ipynb present in the same project folder.
DOI: 10.3535/pd7-pqn-bph
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xr4-tqc-6d3
title: Streptelasma sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19353518.v1
title: rs1021188-TN.xlsx

description: Genetic association of rs1021188 and DNA methylation signatures of TNFSF11 in the risk of Conductive Hearing Loss
DOI: 10.6084/m9.figshare.24251809.v3
title: Meira Neto et al 20203

description: Data to accompany the manuscript "Evolution of Drought Mitigation and Water Security through 100 Years of Reservoir Expansion in Semi-Arid Brazil"<br><br>Main Codes<br>Res_Imp_AJ_Daily_1.m = Main Code<br>Res_Imp_AJ_Daily_2.m = Secondary Code, mostly for figure plottingAll functions are stored in the following matlab file:<br>Functions_Meira_Neto_et_al.m<br><br>Inputs (.mat files - main codes describes each file)<br>Storage_Capacity_AJ<br>Qobs_IG_ext_2023<br>Qsim_IG_ext_2023<br>Qsim_AJ_ext_2023<br>IGUATU_RES_GIS<br>match_res<br>AJ_RES_GIS<br>Acudes_Bruno<br>vazao_oros<br>volume_oros<br>Summary_Demands_1<br><br>**Functions added (those functions were missing in the previous version)datelabelresclass dynamicsmake_q_nextmake_regime_decademake_regime_decade_soil
DOI: 10.6084/m9.figshare.27966912.v1
title: MFPT.zip

description: Three normal data:Load 270 lbs, input shaft speed 25Hz, sampling frequency 997656, duration 6 sec.Three outer ring faults: load 270 lbs, input shaft speed 25Hz, sampling frequency 97656, duration 6 secSeven outer ring faults: input shaft speed 25Hz, sampling frequency 48828, duration 3 seconds, seven data loads are 25, 50, 100, 150, 200, 250, 300;Seven inner ring faults: input shaft speed 25Hz, sampling frequency 48828, duration 3 seconds, 7 data loads respectively 0, 50, 100, 150, 200, 250, 300;
DOI: 10.3535/6pw-n50-yqe
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7yl-2hq-zky
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20038700.v1
title: Molecular markers for assessing the inter- and intra-racial genetic diversity and structure of common bean

description: The genotypic raw data here deposited were used to conduct the analyses presented at the manuscript "Molecular markers for assessing the inter- and intra-racial genetic diversity and structure of common bean". The detailed methodology describing how the data were analyzed, as well as, the results and discussion are presented in the manuscript.
DOI: 10.6084/m9.figshare.2095720.v2
title: Cuatro métodos para la estimación de la densidad de población humana para el estado Zulia, República Bolivariana de Venezuela

description: La densidad poblacional o población relativa es una medida del número de habitantes por unidad de área y es un dato útil para la planificación y gestión de recursos, planes de inversión, conservación y manejo de recursos naturales, salud pública, educación, etc.<br><br>Este documento considera cuatro métodos que combinan información de censos, uso de la tierra y herramientas de estadística espacial para la estimación de la densidad poblacional (número de habitantes por km<sup>2</sup>). A manera de ejemplo se aplican estos métodos en el estado Zulia de la República Bolivariana de Venezuela.<br>
DOI: 10.3535/j2p-s1t-z65
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qd9-9yk-k5t
title: Capulus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.