cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26679827
title: Additional file 7 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 7: Table S5. Title: ClueGO Gene Ontology (GO) results of selected genes in the rCCA approach. Description: Functional analysis included significant GO terms with and without “GO Term Fusion” (biological process, pathways and molecular functions, BH-corrected P-value &lt; 0.05) and was performed with the background of all genes expressed in muscle.
DOI: 10.6084/m9.figshare.26679830
title: Additional file 8 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 8: Table S6. Title: Mean comparison between the two FA conditions with the extreme values obtained through classification using PCA (see details in Fig. 4). Description: This analysis included the FA profile (n = 60 animals) with the 13 phenotypes selected in the rCCA approach, and in addition the IMF content. Significant differences (P-value &lt; 0.05) between FA conditions were determined using a t-test, and the standard error of the mean (SEM) was calculated.
DOI: 10.6084/m9.figshare.26679830.v1
title: Additional file 8 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 8: Table S6. Title: Mean comparison between the two FA conditions with the extreme values obtained through classification using PCA (see details in Fig. 4). Description: This analysis included the FA profile (n = 60 animals) with the 13 phenotypes selected in the rCCA approach, and in addition the IMF content. Significant differences (P-value &lt; 0.05) between FA conditions were determined using a t-test, and the standard error of the mean (SEM) was calculated.
DOI: 10.6084/m9.figshare.26679833
title: Additional file 9 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 9: Table S7. Title: Results of the Pearson correlation between each pair of FA (n = 15) using 60 samples delimited in two conditions. Description: This output was obtained using the cor.test function using R base.
DOI: 10.6084/m9.figshare.26679833.v1
title: Additional file 9 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 9: Table S7. Title: Results of the Pearson correlation between each pair of FA (n = 15) using 60 samples delimited in two conditions. Description: This output was obtained using the cor.test function using R base.
DOI: 10.6084/m9.figshare.26679836
title: Additional file 10 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 10: Table S8. Title: Results of the analysis of differentially expressed (DE) genes between the two FA conditions (lfc = 1.5 and padj = 0.05). Description: This output was obtained using the functions of the CeTF package.
DOI: 10.6084/m9.figshare.26679836.v1
title: Additional file 10 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 10: Table S8. Title: Results of the analysis of differentially expressed (DE) genes between the two FA conditions (lfc = 1.5 and padj = 0.05). Description: This output was obtained using the functions of the CeTF package.
DOI: 10.6084/m9.figshare.26679839
title: Additional file 11 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 11: Table S9. Title: Results of the distribution of DE genes and key TF in both conditions, as well as the relationship between log(baseMean) and expression difference. Description: This output was obtained using the functions of the CeTF package.
DOI: 10.6084/m9.figshare.26679839.v1
title: Additional file 11 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

description: Additional file 11: Table S9. Title: Results of the distribution of DE genes and key TF in both conditions, as well as the relationship between log(baseMean) and expression difference. Description: This output was obtained using the functions of the CeTF package.
DOI: 10.6084/m9.figshare.25210830
title: Additional file 2 of Novel genetic markers for chronic kidney disease in a geographically isolated population of Indigenous Australians: Individual and multiple phenotype genome-wide association study

description: Additional file 2: Table S5a. This table contains the variants which pass the nominal significance levels (p&lt;1e-05) for the variable urinary Albumin-to-creatine ratio (ACR) and its annotation which includes consequences of the variant, mapped gene, beta coefficients direction (incline/decline).
DOI: 10.6084/m9.figshare.25210830.v1
title: Additional file 2 of Novel genetic markers for chronic kidney disease in a geographically isolated population of Indigenous Australians: Individual and multiple phenotype genome-wide association study

description: Additional file 2: Table S5a. This table contains the variants which pass the nominal significance levels (p&lt;1e-05) for the variable urinary Albumin-to-creatine ratio (ACR) and its annotation which includes consequences of the variant, mapped gene, beta coefficients direction (incline/decline).
DOI: 10.6084/m9.figshare.26679890
title: Additional file 3 of Novel genetic markers for chronic kidney disease in a geographically isolated population of Indigenous Australians: Individual and multiple phenotype genome-wide association study

description: Additional file 3: Table S5b. This table contains the variants which pass the nominal significance levels (p&lt;1e-05) for the variable CGAA_PC_1 (multiple phenotype PCA factor) and its annotation which includes consequences of the variant, mapped gene, beta coeffecients direction (incline/decline).
DOI: 10.6084/m9.figshare.26679890.v1
title: Additional file 3 of Novel genetic markers for chronic kidney disease in a geographically isolated population of Indigenous Australians: Individual and multiple phenotype genome-wide association study

description: Additional file 3: Table S5b. This table contains the variants which pass the nominal significance levels (p&lt;1e-05) for the variable CGAA_PC_1 (multiple phenotype PCA factor) and its annotation which includes consequences of the variant, mapped gene, beta coeffecients direction (incline/decline).
DOI: 10.6084/m9.figshare.25210504
title: Additional file 1 of An atlas of cell-type-specific interactome networks across 44 human tumor types

description: Additional file 1: Table S1. The collection of scRNA-seq data used in this study. Table S2. The scRNA-seq datasets of solid tumor samples used in this study. Table S3. The scRNA-seq datasets of hematologic malignancy samples used in this study. Table S4. Curated marker genes for different cell types. Table S5. Curated marker genes for different immune cell subsets. Table S6. Information of four reference networks used in this study. Table S7. Curated COSMIC somatic mutation data for each solid tumor type. Table S8. Number of nodes and edges of cell-type-specific networks in each tumor type. Table S9. Number of nodes and edges of cell-subset-specific networks in pan-tumor TIMEs. Table S10. DisGeNET disease gene sets used in network performance evaluation. Table S11. Canonical marker genes for 8 cell subsets in myeloid cells of pan-tumor TIMEs. Table S12. The data collection of six ICB therapy cohorts.
DOI: 10.6084/m9.figshare.25210504.v1
title: Additional file 1 of An atlas of cell-type-specific interactome networks across 44 human tumor types

description: Additional file 1: Table S1. The collection of scRNA-seq data used in this study. Table S2. The scRNA-seq datasets of solid tumor samples used in this study. Table S3. The scRNA-seq datasets of hematologic malignancy samples used in this study. Table S4. Curated marker genes for different cell types. Table S5. Curated marker genes for different immune cell subsets. Table S6. Information of four reference networks used in this study. Table S7. Curated COSMIC somatic mutation data for each solid tumor type. Table S8. Number of nodes and edges of cell-type-specific networks in each tumor type. Table S9. Number of nodes and edges of cell-subset-specific networks in pan-tumor TIMEs. Table S10. DisGeNET disease gene sets used in network performance evaluation. Table S11. Canonical marker genes for 8 cell subsets in myeloid cells of pan-tumor TIMEs. Table S12. The data collection of six ICB therapy cohorts.
DOI: 10.6084/m9.figshare.25210576
title: Additional file 1 of Association of type 2 Diabetes Mellitus and bone mineral density: a two-sample Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25210576.v1
title: Additional file 1 of Association of type 2 Diabetes Mellitus and bone mineral density: a two-sample Mendelian randomization study

description: Supplementary Material 1
DOI: 10.5281/zenodo.13380935
title: Data from: GPR160 de-orphanization reveals critical roles in neuropathic pain in rodents. (J Clin Invest. 2020 May 1;130(5):2587-2592. doi: 10.1172/JCI133270)

description: Treating neuropathic pain is challenging and novel non–opioid-based medicines are needed. Using unbiased receptomics, transcriptomic analyses, immunofluorescence, and in situ hybridization, we found that the expression of the orphan GPCR Gpr160 and GPR160 increased in the rodent dorsal horn of the spinal cord following traumatic nerve injury. Genetic and immunopharmacological approaches demonstrated that GPR160 inhibition in the spinal cord prevented and reversed neuropathic pain in male and female rodents without altering normal pain response. GPR160 inhibition in the spinal cord attenuated sensory processing in the thalamus, a key relay in the sensory discriminative pathways of pain. We also identified cocaine- and amphetamine-regulated transcript peptide (CARTp) as a GPR160 ligand. Inhibiting endogenous CARTp signaling in spinal cord attenuated neuropathic pain, whereas exogenous intrathecal CARTp evoked painful hypersensitivity through GPR160-dependent ERK and cAMP response element–binding protein (CREB). Our findings de-orphanize GPR160, identify it as a determinant of neuropathic pain and potential therapeutic target, and provide insights into its signaling pathways. CARTp is involved in many diseases including depression and reward and addiction; de-orphanization of GPR160 is a major step forward understanding the role of CARTp signaling in health and disease.

The content of this record contains the raw data and statistical analyses used in this study. Complete RNA-Seq data are available through the NCBI’s Gene Expression Omnibus (GEO) repository (GSE143895).
DOI: 10.5281/zenodo.13380936
title: Data from: GPR160 de-orphanization reveals critical roles in neuropathic pain in rodents. (J Clin Invest. 2020 May 1;130(5):2587-2592. doi: 10.1172/JCI133270)

description: Treating neuropathic pain is challenging and novel non–opioid-based medicines are needed. Using unbiased receptomics, transcriptomic analyses, immunofluorescence, and in situ hybridization, we found that the expression of the orphan GPCR Gpr160 and GPR160 increased in the rodent dorsal horn of the spinal cord following traumatic nerve injury. Genetic and immunopharmacological approaches demonstrated that GPR160 inhibition in the spinal cord prevented and reversed neuropathic pain in male and female rodents without altering normal pain response. GPR160 inhibition in the spinal cord attenuated sensory processing in the thalamus, a key relay in the sensory discriminative pathways of pain. We also identified cocaine- and amphetamine-regulated transcript peptide (CARTp) as a GPR160 ligand. Inhibiting endogenous CARTp signaling in spinal cord attenuated neuropathic pain, whereas exogenous intrathecal CARTp evoked painful hypersensitivity through GPR160-dependent ERK and cAMP response element–binding protein (CREB). Our findings de-orphanize GPR160, identify it as a determinant of neuropathic pain and potential therapeutic target, and provide insights into its signaling pathways. CARTp is involved in many diseases including depression and reward and addiction; de-orphanization of GPR160 is a major step forward understanding the role of CARTp signaling in health and disease.

The content of this record contains the raw data and statistical analyses used in this study. Complete RNA-Seq data are available through the NCBI’s Gene Expression Omnibus (GEO) repository (GSE143895).
DOI: 10.15468/dl.9yhzkb
title: Occurrence Download

description: A dataset containing 38102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "DecimalLatitude is greater than 21.2321539956289",
 "DecimalLatitude is less than 21.5424339966998",
 "DecimalLongitude is greater than -158.217040034129",
 "DecimalLongitude is less than -157.896995070163"
 ]
}

 The dataset includes 38102 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003039-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-27744
title: People v. Powell transcripts, 1991 Apr. 30 - May 31

description: Mark H. Epstein, memorandum, 1991 May 7, to File, re April 30, 1991 hearing. ❧ The People of the State of California vs. Laurence M. Powell, Timothy E. Wind, Theodore J. Briseno, and Stacey C. Koon ("People v. Powell, et. al"), 1991 April 30 - 1991 May 31. PART OF A SERIES: The series pertains to the work of Munger, Tolles & Olson, the firm responsible for coordinating the activities and proceedings of the Independent Commission's legal counsel. Included are legal briefs, court transcripts, and memoranda; press releases and article clippings about the Rodney King incident and the subsequent creation of the Independent Commission; summaries of witness interviews; analyses of legislation regarding the role and purview of peace officers; work plans and outlines developed by Commission staff; draft copies developed for all sections of the Commission report; supplemental materials for the report, including a copy of the Rodney King arrest log, law enforcement literature, and public opinion surveys; materials distributed and reviewed during Commission meetings; letters of interest submitted to Chairman Christopher from prospective Commission members and organizations; and lists of bills and Commission expenditures.
DOI: 10.15468/dl.7en8f7
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Senecio krascheninnikovii Schischk."
 ]
}

 The dataset includes 228 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013818-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.neyjdn
title: Occurrence Download

description: A dataset containing 792 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Nestegis montana (Hook.f.) L.A.S.Johnson"
 ]
}

 The dataset includes 792 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003039-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crdzrc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 35.8559466054097",
 "DecimalLatitude is less than 36.4058825743486",
 "DecimalLongitude is greater than -80.1868244184192",
 "DecimalLongitude is less than -79.4990822900635"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005265-180824113759888/datasets/export for details.
DOI: 10.15468/dl.853j76
title: Occurrence Download

description: A dataset containing 1112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaylussacia buxifolia Kunth"
 ]
}

 The dataset includes 1112 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001955-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubyp5k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 47.6888809316125",
 "DecimalLatitude is less than 48.2751403315564",
 "DecimalLongitude is greater than -90.2360720587099",
 "DecimalLongitude is less than -89.277045658176"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005258-180824113759888/datasets/export for details.
DOI: 10.15468/dl.g0hhbm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 40.0145222774361",
 "DecimalLatitude is less than 40.5632374739554",
 "DecimalLongitude is greater than -97.1953933140432",
 "DecimalLongitude is less than -96.4695559360107"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005282-180824113759888/datasets/export for details.
DOI: 10.15468/dl.4kckrm
title: Occurrence Download

description: A dataset containing 4177 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia squamulosa (Sm.) Triana"
 ]
}

 The dataset includes 4177 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001956-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5qopm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 47.0534616985078",
 "DecimalLatitude is less than 47.6558938568448",
 "DecimalLongitude is greater than -101.797258034676",
 "DecimalLongitude is less than -100.970612809492"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005320-180824113759888/datasets/export for details.
DOI: 10.15468/dl.hy2r7h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 34.8469085554877",
 "DecimalLatitude is less than 35.4292220214183",
 "DecimalLongitude is greater than -81.7502794364289",
 "DecimalLongitude is less than -81.032286215274"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005317-180824113759888/datasets/export for details.
DOI: 10.25549/independent-c69-27708
title: People v. Powell transcripts, 1991 Apr. 30 - May 31

description: Mark H. Epstein, memorandum, 1991 May 7, to File, re April 30, 1991 hearing. ❧ The People of the State of California vs. Laurence M. Powell, Timothy E. Wind, Theodore J. Briseno, and Stacey C. Koon ("People v. Powell, et. al"), 1991 April 30 - 1991 May 31. PART OF A SERIES: The series pertains to the work of Munger, Tolles & Olson, the firm responsible for coordinating the activities and proceedings of the Independent Commission's legal counsel. Included are legal briefs, court transcripts, and memoranda; press releases and article clippings about the Rodney King incident and the subsequent creation of the Independent Commission; summaries of witness interviews; analyses of legislation regarding the role and purview of peace officers; work plans and outlines developed by Commission staff; draft copies developed for all sections of the Commission report; supplemental materials for the report, including a copy of the Rodney King arrest log, law enforcement literature, and public opinion surveys; materials distributed and reviewed during Commission meetings; letters of interest submitted to Chairman Christopher from prospective Commission members and organizations; and lists of bills and Commission expenditures.
DOI: 10.15468/dl.we8tbb
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreopanax bogotensis Cuatrec."
 ]
}

 The dataset includes 711 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001959-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.im1aai
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 47.9758775943128",
 "DecimalLatitude is less than 48.7210518065534",
 "DecimalLongitude is greater than -121.258555610612",
 "DecimalLongitude is less than -120.141055196372"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005325-180824113759888/datasets/export for details.
DOI: 10.15468/dl.mvnhud
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alphonsea lucida King"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027409-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkut9b
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus retroflexus subsp. delilei (Richt. & Loret) Tzvelev"
 ]
}

 The dataset includes 101 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003040-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.