cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.26026732.v1
title: Supporting data for<b> </b>"Navigating Discord: Unpacking the Parent-Child Political Incongruence Amidst the 2019 Social Unrest and Its Impact on Family Relationships"

description: This thesis investigates the roots and longer-term consequences of parent-child political incongruence during and after the 2019 social unrest in Hong Kong, focusing on moral disagreements, impacts on personal and family life, and protective factors for family bonds. Utilizing data from forum comments, surveys, and diaries collected from 2019 to 2021, the thesis explores: 1) moral disagreements contributing to political incongruence; 2) effects of political incongruence on individuals' personal and family well-being; and 3) protective factors that mitigate its impact on emotional connections among family members.The first two datasets include text-mining data and narratives from forum discussions on LIHKG in 2019. The third dataset consists of young adult data from a two-wave prospective survey conducted from 2019 to 2020. The fourth to sixth datasets comprise cross-sectional survey data from a mixed sample of young and older adults collected in 2021, along with follow-up data from 14-day diary records and surveys on its subsample.
DOI: 10.5281/zenodo.10938757
title: Exploring Community Smells in Machine Learning Applications: Analytical Insights and Their Association with Self-Admitted Technical Debt
DOI: 10.5281/zenodo.12488641
title: Exploring Community Smells in Machine Learning Applications: Analytical Insights and Their Association with Self-Admitted Technical Debt
DOI: 10.25442/hku.26013787
title: Supporting data for "Application of Retinal-nerve-fiber-layer Optical Texture Analysis (ROTA) in Glaucoma"

description: Glaucoma is the leading cause of irreversible blindness characterised by chronic degeneration of retinal ganglion cells (RGCs). However, the diagnosis and monitoring of glaucoma is sometimes challenging, especially in late stages of disease. Retinal-nerve-fiber-layer optical texture analysis (ROTA) is an algorithm that combines the thickness and reflectance measurements of RNFL obtained from OCT scans, uncovering the trajectory and optical texture of the axonal fiber bundles across the retina. Visualizing the axonal fiber bundles on the retina in a wide field, ROTA has been shown to have enhanced sensitivity and specificity in detecting RNFL defects in glaucoma patients.This dataset is the data from two studies, including (1) the prevalence and risk factors of glaucoma diagnosed by ROTA in Hong Kong; (2) the patters of RNFL defect of advanced glaucoma using ROTA. Two studies both demonstrated the importance of ROTA in early diagnosis of glaucoma and disease progression assessment.
DOI: 10.25442/hku.26013787.v1
title: Supporting data for "Application of Retinal-nerve-fiber-layer Optical Texture Analysis (ROTA) in Glaucoma"

description: Glaucoma is the leading cause of irreversible blindness characterised by chronic degeneration of retinal ganglion cells (RGCs). However, the diagnosis and monitoring of glaucoma is sometimes challenging, especially in late stages of disease. Retinal-nerve-fiber-layer optical texture analysis (ROTA) is an algorithm that combines the thickness and reflectance measurements of RNFL obtained from OCT scans, uncovering the trajectory and optical texture of the axonal fiber bundles across the retina. Visualizing the axonal fiber bundles on the retina in a wide field, ROTA has been shown to have enhanced sensitivity and specificity in detecting RNFL defects in glaucoma patients.This dataset is the data from two studies, including (1) the prevalence and risk factors of glaucoma diagnosed by ROTA in Hong Kong; (2) the patters of RNFL defect of advanced glaucoma using ROTA. Two studies both demonstrated the importance of ROTA in early diagnosis of glaucoma and disease progression assessment.
DOI: 10.15468/dl.re7k9f
title: Occurrence Download

description: A dataset containing 1594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fraxinus angustifolia subsp. oxycarpa (M.Bieb. ex Willd.) Franco & Rocha Afonso)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1594 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089827-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.26013775
title: <i>Supporting data for</i> 'Functional characterization of sialidases from oral bacteria'

description: This study delves into an in-depth investigation of the sialidase homologues present in oral bacteria, with a particular emphasis on <i>Schaalia odontolytica</i>, <i>Schaalia meyeri</i>, and <i>Capnocytophaga ochracea</i>. The primary focus of this comprehensive analysis encompasses the assessment of recombinant sialidase protein activity, the distribution of sialidase genes within the bacterial genome, as well as the exploration of its biochemical properties and biological functions. The comprehensive analysis of sialidase homologues contributes significantly to the current understanding of these enzymes and their diverse roles in bacterial physiology or pathogenesis. This data not only sheds light on the distinctive functions of sialidases that have remained unexplored thus far but also provides a solid foundation for further research in this field.
DOI: 10.25442/hku.26013775.v1
title: <i>Supporting data for</i> 'Functional characterization of sialidases from oral bacteria'

description: This study delves into an in-depth investigation of the sialidase homologues present in oral bacteria, with a particular emphasis on <i>Schaalia odontolytica</i>, <i>Schaalia meyeri</i>, and <i>Capnocytophaga ochracea</i>. The primary focus of this comprehensive analysis encompasses the assessment of recombinant sialidase protein activity, the distribution of sialidase genes within the bacterial genome, as well as the exploration of its biochemical properties and biological functions. The comprehensive analysis of sialidase homologues contributes significantly to the current understanding of these enzymes and their diverse roles in bacterial physiology or pathogenesis. This data not only sheds light on the distinctive functions of sialidases that have remained unexplored thus far but also provides a solid foundation for further research in this field.
DOI: 10.25442/hku.25957198
title: Supporting data for “Functional Characterization of proteins involved in bacterial polyphosphate and alarmone metabolism”

description: Our research focuses on a detailed analysis of the PPX-GppA, PPK1/PPK2 and RelA/SpoT (RSH) homologue found in oral bacteria. Our analysis includes the recombinant protein activity, genomic distribution, and its functional correlation with adjacent proteins. These data provide insight into the unique functions of polyp metabolism and pppGpp metabolism that were previously unexplored.
DOI: 10.25442/hku.25957198.v1
title: Supporting data for “Functional Characterization of proteins involved in bacterial polyphosphate and alarmone metabolism”

description: Our research focuses on a detailed analysis of the PPX-GppA, PPK1/PPK2 and RelA/SpoT (RSH) homologue found in oral bacteria. Our analysis includes the recombinant protein activity, genomic distribution, and its functional correlation with adjacent proteins. These data provide insight into the unique functions of polyp metabolism and pppGpp metabolism that were previously unexplored.
DOI: 10.25442/hku.25954876.v1
title: Supporting data for “The investigation on the spatial control of sensory nerve and blood vessel regeneration in osteogenesis”

description: This study identified the spatial guidance mechanism that regulate the reinnervation process of sensory nerves, which is essential for the regeneration of bone tissue. This thesis data contained three databases for Chapter 4, 5, and 6. The database for Chapter 4 contained the figures, excels, and prism files generated from genotyping experiment, micro-CT analysis, histological analysis, IHC staining, and scRNA-seq. The database for Chapter 5 contained the figures, excels, and prism files for the characterization of macrophages, the cellular interaction between the macrophages and DRGs. The database for Chapter 6 contained the figures, excels, and prism files regarding the underlying mechanism of spatial control generated by IHC staining, ICC staining and scRNA-seq . All of the data were input and summarized and named accordingly into subfolders for different analysis method.
DOI: 10.25442/hku.25954876
title: Supporting data for “The investigation on the spatial control of sensory nerve and blood vessel regeneration in osteogenesis”

description: This study identified the spatial guidance mechanism that regulate the reinnervation process of sensory nerves, which is essential for the regeneration of bone tissue. This thesis data contained three databases for Chapter 4, 5, and 6. The database for Chapter 4 contained the figures, excels, and prism files generated from genotyping experiment, micro-CT analysis, histological analysis, IHC staining, and scRNA-seq. The database for Chapter 5 contained the figures, excels, and prism files for the characterization of macrophages, the cellular interaction between the macrophages and DRGs. The database for Chapter 6 contained the figures, excels, and prism files regarding the underlying mechanism of spatial control generated by IHC staining, ICC staining and scRNA-seq . All of the data were input and summarized and named accordingly into subfolders for different analysis method.
DOI: 10.25442/hku.25988611
title: Supporting data for “SOX4 is a master regulator of initiation, progression and immune evasion in Nasopharyngeal Carcinoma via disruption of zinc homeostasis”

description: Based on single-cell RNA sequencing (scRNA-seq) analysis and bulk transcriptome data validation, we observed specifically and significantly high expression levels of SRY-Box transcription factor 4 (SOX4), an essential developmental transcription factor, in NPC cells compared to infiltrating immune and stromal cells. In our study, we found that the upregulation of SOX4 contributed to tumor growth, distant metastasis, and stemness maintenance. More interestingly, we noticed NPC cells could affect infiltrated CD8+ T cell function via competitive zinc deprivation. During this process, the overexpressed SOX4 promoted the upregulation of downstream target SLC39A14 (ZIP14), which is the zinc transporter protein, to uptake excessive zinc from the extracellular microenvironment, as a result, leading to zinc competitive deprivation in infiltrated T cells. T-cell zinc competitive deprivation inhibited TCR signaling, impeded T-cell activation, and caused CD8+ T cytotoxicity failure, ultimately resulting in NPC immune evasion. This study first demonstrated that the SOX4-ZIP14-zinc axis played a crucial role in both the induction of tumor progression and the suppression of the immune response in NPC.
DOI: 10.25442/hku.25988611.v1
title: Supporting data for “SOX4 is a master regulator of initiation, progression and immune evasion in Nasopharyngeal Carcinoma via disruption of zinc homeostasis”

description: Based on single-cell RNA sequencing (scRNA-seq) analysis and bulk transcriptome data validation, we observed specifically and significantly high expression levels of SRY-Box transcription factor 4 (SOX4), an essential developmental transcription factor, in NPC cells compared to infiltrating immune and stromal cells. In our study, we found that the upregulation of SOX4 contributed to tumor growth, distant metastasis, and stemness maintenance. More interestingly, we noticed NPC cells could affect infiltrated CD8+ T cell function via competitive zinc deprivation. During this process, the overexpressed SOX4 promoted the upregulation of downstream target SLC39A14 (ZIP14), which is the zinc transporter protein, to uptake excessive zinc from the extracellular microenvironment, as a result, leading to zinc competitive deprivation in infiltrated T cells. T-cell zinc competitive deprivation inhibited TCR signaling, impeded T-cell activation, and caused CD8+ T cytotoxicity failure, ultimately resulting in NPC immune evasion. This study first demonstrated that the SOX4-ZIP14-zinc axis played a crucial role in both the induction of tumor progression and the suppression of the immune response in NPC.
DOI: 10.25442/hku.25990993
title: Supporting data for "Exploring the Role of Microbial Metabolites in Human Health Guided by Omics Analysis"

description: This is supporting data for "Exploring the Role of Microbial Metabolites in Human Health Guided by Omics Analysis", which consists of some datasets to support two research projects outlined in the thesis. To be specific:Elucidating the Diversity and Potential Function of Ribosomally Synthesized and Post-translationally Modified Peptides in the Human Microbiome;Omics-guided Analysis of Gut Microbial Metabolites Sulfonolipids and Their Implication in Inflammatory Bowel DiseaseWe utilized genome mining and omics data analysis to identify potential microbial small molecules from the human microbiome and investigate their potential role in human diseases.
DOI: 10.25442/hku.25990993.v1
title: Supporting data for "Exploring the Role of Microbial Metabolites in Human Health Guided by Omics Analysis"

description: This is supporting data for "Exploring the Role of Microbial Metabolites in Human Health Guided by Omics Analysis", which consists of some datasets to support two research projects outlined in the thesis. To be specific:Elucidating the Diversity and Potential Function of Ribosomally Synthesized and Post-translationally Modified Peptides in the Human Microbiome;Omics-guided Analysis of Gut Microbial Metabolites Sulfonolipids and Their Implication in Inflammatory Bowel DiseaseWe utilized genome mining and omics data analysis to identify potential microbial small molecules from the human microbiome and investigate their potential role in human diseases.
DOI: 10.15468/dl.j4wgfc
title: Occurrence Download

description: A dataset containing 1811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ligustrum tschonoskii Decne.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1811 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089828-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exuuts
title: Occurrence Download

description: A dataset containing 1005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eleutherococcus nodiflorus (Dunn) S.Y.Hu"
 ]
}

 The dataset includes 1005 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089829-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.25981849
title: Supporting data for "<b>Know More, Say More? The Effects of Supervisors’ Knowledge-Focused Leadership and Subordinates’ Goal Orientation on Subordinates’ Voice"</b>

description: This study seeks to advance scholarly understanding of the drivers of voice by adopting a knowledge perspective. Guided by the knowledge acquisition-utilization model, the author contends that supervisors’ knowledge-focused leadership, which has been largely neglected in management research, determines the extent to which subordinates acquire job and contextual knowledge. As subordinates accumulate greater job and contextual knowledge, they engage in more voice to utilize their knowledge. Crucially, this knowledge acquisition-utilization process may vary according to subordinates’ goal orientation. The investigation involved five studies. Study 1 involved inductive and deductive item generation and interviews, culminating in a 20-item scale capturing the four dimensions of KL, including coaching, feedback-giving, providing learning opportunities, and proactive example-setting. Studies 2 and 3, with samples of 294 and 468 participants, respectively, established the scale’s psychometric properties through item reduction, measurement model validation, and discriminant and predictive validity tests. Study 4 adopted a within-person 8-week design with a sample of 215 supervisor-subordinate dyads from diverse job industries. Study 5 provided additional predictive validity evidence. The findings supported the premise that KL facilitates subordinates’ acquisition of job and contextual knowledge, both of which positively relate to their promotive voice (but not prohibitive voice). The indirect effect of KL on voice via job and contextual knowledge is stronger for subordinates with low (vs. high) performance goal orientation. Overall, this study moves the voice literature forward by enacting a knowledge perspective that has been unexplored thus far, positing that supervisors’ KL and subordinates’ goal orientation are pivotal factors driving one’s voice, with the acquisition of job and contextual knowledge being the core mediating mechanisms.
DOI: 10.25442/hku.25981849.v1
title: Supporting data for "<b>Know More, Say More? The Effects of Supervisors’ Knowledge-Focused Leadership and Subordinates’ Goal Orientation on Subordinates’ Voice"</b>

description: This study seeks to advance scholarly understanding of the drivers of voice by adopting a knowledge perspective. Guided by the knowledge acquisition-utilization model, the author contends that supervisors’ knowledge-focused leadership, which has been largely neglected in management research, determines the extent to which subordinates acquire job and contextual knowledge. As subordinates accumulate greater job and contextual knowledge, they engage in more voice to utilize their knowledge. Crucially, this knowledge acquisition-utilization process may vary according to subordinates’ goal orientation. The investigation involved five studies. Study 1 involved inductive and deductive item generation and interviews, culminating in a 20-item scale capturing the four dimensions of KL, including coaching, feedback-giving, providing learning opportunities, and proactive example-setting. Studies 2 and 3, with samples of 294 and 468 participants, respectively, established the scale’s psychometric properties through item reduction, measurement model validation, and discriminant and predictive validity tests. Study 4 adopted a within-person 8-week design with a sample of 215 supervisor-subordinate dyads from diverse job industries. Study 5 provided additional predictive validity evidence. The findings supported the premise that KL facilitates subordinates’ acquisition of job and contextual knowledge, both of which positively relate to their promotive voice (but not prohibitive voice). The indirect effect of KL on voice via job and contextual knowledge is stronger for subordinates with low (vs. high) performance goal orientation. Overall, this study moves the voice literature forward by enacting a knowledge perspective that has been unexplored thus far, positing that supervisors’ KL and subordinates’ goal orientation are pivotal factors driving one’s voice, with the acquisition of job and contextual knowledge being the core mediating mechanisms.
DOI: 10.25442/hku.25954048
title: <b>Supporting data for “I-DID Carnival: A Mobile Game Intervention for Children with </b><b>Dyslexia, in Perception-Production based, Visual-Auditory </b><b>approach"</b>

description: The project will have 3 parts of data, including personal data from non-clinical research (i.e. HREC approved). The first part is the quantitative behavioural testing data, the second is the questionnaire data, and the third is the in-game playing data.For parts 1 and 3, the response accuracy and reaction time will be recorded. Besides, audio-recordings were taken and transcribed into an encoded format.
DOI: 10.25442/hku.25954048.v1
title: <b>Supporting data for “I-DID Carnival: A Mobile Game Intervention for Children with </b><b>Dyslexia, in Perception-Production based, Visual-Auditory </b><b>approach"</b>

description: The project will have 3 parts of data, including personal data from non-clinical research (i.e. HREC approved). The first part is the quantitative behavioural testing data, the second is the questionnaire data, and the third is the in-game playing data.For parts 1 and 3, the response accuracy and reaction time will be recorded. Besides, audio-recordings were taken and transcribed into an encoded format.
DOI: 10.15468/dl.s7q8gz
title: Occurrence Download

description: A dataset containing 3004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fraxinus mandshurica Rupr.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3004 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089830-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.25996618
title: Supporting data for the thesis <b>"</b><b>A trait-based approach to deciphering diversity change and its consequences on ecosystem functioning"</b>

description: The dissertation focuses on the consequences of non-random biodiversity loss on ecosystem functioning in both artificial and naturally altered ant assemblages. Several morphological functional traits were assessed and identified to mediate response to invasion and contribution to ecosystem functioning. Additionally, intraspecific variation in identified traits were examined. Furthermore, the pattern of functional trait changes in invaded assemblages is explained through body size differences. <br>
DOI: 10.25442/hku.25996618.v1
title: Supporting data for the thesis <b>"</b><b>A trait-based approach to deciphering diversity change and its consequences on ecosystem functioning"</b>

description: The dissertation focuses on the consequences of non-random biodiversity loss on ecosystem functioning in both artificial and naturally altered ant assemblages. Several morphological functional traits were assessed and identified to mediate response to invasion and contribution to ecosystem functioning. Additionally, intraspecific variation in identified traits were examined. Furthermore, the pattern of functional trait changes in invaded assemblages is explained through body size differences. <br>
DOI: 10.25442/hku.25662795
title: <i>Supporting data for "The Role of GLYATL1 in liver hepatocellular carcinoma".</i>

description: The research explores the role of GLYATL1 in the development of LIHC. The uploaded data file includes assessments of the effect of GLYATL1 in LIHC tumorigenesis, which includes cell proliferation, migration ability, and stemness markers. In addition, metabolic effects such as glutamine and lipid metabolism were also evaluated. Moreover, cell death and immune effect were also found to be influenced by GLYATL1.
DOI: 10.25442/hku.25662795.v1
title: <i>Supporting data for "The Role of GLYATL1 in liver hepatocellular carcinoma".</i>

description: The research explores the role of GLYATL1 in the development of LIHC. The uploaded data file includes assessments of the effect of GLYATL1 in LIHC tumorigenesis, which includes cell proliferation, migration ability, and stemness markers. In addition, metabolic effects such as glutamine and lipid metabolism were also evaluated. Moreover, cell death and immune effect were also found to be influenced by GLYATL1.