cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5093688
title: Looking in the medicine cabinet: methods for using real-world data to assess the impact of measles, mumps and rubella (MMR) and recombinant adjuvanted varicella-zoster vaccines on coronavirus disease 2019 (COVID-19) prevention and case fatality

description: Supplementary File S1. 20210712_vx_off_target_pubdraft_S1 (Tables, Graphs and scripts associated with publication) Data file 1. Basic_Analysis.R (descriptive analysis script in R, for use with cleaned data files 3, 4 and 6)<br> Data file 2. Cleaning (Script demonstrating how Cerner data was cleaned upon download)<br> Data file 3. COVID_all_cleaned (CSV file with all COVID+ subjects in Cerner institutions)<br> Data file 4. COVID_mmr_data_cleaned (CSV file with COVID+ patients between 25-64 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, MMR vaccine history and mortality outcomes)<br> Data file 5. COVID_mmr_data_matched (CSV file matching MMR vaccine-exposed cases to controls based on propensity scores)<br> Data file 6. COVID_zoster_data_cleaned (CSV file with COVID+ patients above 50 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, zoster vaccine history and mortality outcomes)<br> Data file 7. COVID_zoster_data_matched (CSV file matching zoster vaccine-exposed cases to controls based on propensity scores)<br> Data file 8. General_25_64_data_cleaned (CSV file, all patients in Cerner institutions between 25 – 64 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, MMR vaccine history, SARS-CoV-2 infection and COVID-19 mortality outcomes ).<br> Data file 9. General_over50_data_cleaned (CSV file, all patients in Cerner institutions above 50 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, zoster vaccine history, SARS-CoV-2 infection and COVID-19 mortality outcomes).<br> Data file 10. Included_tenants (CSV file, institution IDs whose contributed cases comprise at least 0.5% of the aggregate sample size).<br> Data file 11. MMR_ps (R script to run for MMR-related files analysis)<br> Data file 12. Zoster_ps (R script to run for zoster-related files analysis)
DOI: 10.5281/zenodo.4969976
title: Looking in the medicine cabinet: methods for using real-world data to assess the impact of measles, mumps and rubella (MMR) and recombinant adjuvanted varicella-zoster vaccines on coronavirus disease 2019 (COVID-19) prevention and case fatality

description: Supplementary File S1. 20210712_vx_off_target_pubdraft_S1 (Tables, Graphs and scripts associated with publication) Data file 1. Basic_Analysis.R (descriptive analysis script in R, for use with cleaned data files 3, 4 and 6)<br> Data file 2. Cleaning (Script demonstrating how Cerner data was cleaned upon download)<br> Data file 3. COVID_all_cleaned (CSV file with all COVID+ subjects in Cerner institutions)<br> Data file 4. COVID_mmr_data_cleaned (CSV file with COVID+ patients between 25-64 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, MMR vaccine history and mortality outcomes)<br> Data file 5. COVID_mmr_data_matched (CSV file matching MMR vaccine-exposed cases to controls based on propensity scores)<br> Data file 6. COVID_zoster_data_cleaned (CSV file with COVID+ patients above 50 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, zoster vaccine history and mortality outcomes)<br> Data file 7. COVID_zoster_data_matched (CSV file matching zoster vaccine-exposed cases to controls based on propensity scores)<br> Data file 8. General_25_64_data_cleaned (CSV file, all patients in Cerner institutions between 25 – 64 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, MMR vaccine history, SARS-CoV-2 infection and COVID-19 mortality outcomes ).<br> Data file 9. General_over50_data_cleaned (CSV file, all patients in Cerner institutions above 50 years old, including institution id, age category, gender, whether patient is in emergency department or inpatient, flu vaccine history, zoster vaccine history, SARS-CoV-2 infection and COVID-19 mortality outcomes).<br> Data file 10. Included_tenants (CSV file, institution IDs whose contributed cases comprise at least 0.5% of the aggregate sample size).<br> Data file 11. MMR_ps (R script to run for MMR-related files analysis)<br> Data file 12. Zoster_ps (R script to run for zoster-related files analysis)
DOI: 10.17632/hd8ps3pts8.1
title: Progressively elevated thermal gradients for Miocene metamorphism in the Himalayan orogen: Implications for the heat source of crustal reworking in collisional orogens

description: Geochemical data
DOI: 10.17632/dmjfbfdjxm.1
title: Data for: Tracing the paleo-methane seepage activity over the past 20,000 years in the sediments of Qiongdongnan Basin, northwestern South China Sea

description: It is mainly sediment geochemical data, including grain size, chronology, major/trace elements, TN, TOC, TC.
DOI: 10.17632/4s373hyhj6.1
title: Regulation of beta-amyloid production in neurons by astrocyte-derived cholesterol

description: dSTORM imaging and ELISA data
DOI: 10.17632/4fg7c8t568.1
title: Single Cell Transcriptome Identifies FCGR3B Upregulated Subtype of Alveolar Macrophages in Patients with Critical COVID-19. Nassir et al

description: Supplementary spreadsheets
DOI: 10.17632/hdv56x5vv7.1
title: Cervical cancer diagnosis and treatment delays in the developing world: Evidence from a hospital-based study in Zambia

description: The dataset presented in this article is secondary data obtained from the registry unit of the only cancer treatment Centre in Zambia, the Cancer Diseases Hospital (CDH) in Lusaka. Information relating to patients with a maiden diagnosis of cervical cancer presenting to CDH is outlined in the data. The data is a set of patient demographics, relevant clinical information and the clinical referral channel obtained from patient case files stored at CDH.
DOI: 10.17632/mx3j8ncb5y.1
title: Thinking out of the box: on the abiity of Zea mays L. to biotrasform aflatoxin B1 into its modified forms

description: Raw files acquired using UHPLC-Q-Exactive mass spectrometer. Roots (R_) and leaves (L_) examples file are available.
DOI: 10.5281/zenodo.5228809
title: Data for the analyses in Zhang et. al. (2021, GMDD)

description: This archive contains the data and figures for the analyses in Zhang et al. (2021, GMDD). Included are annual and monthly averages of various model output variables from simulations conducted using the E3SM Atmosphere Model version 0 (EAMv0) and version 1 (EAMv1). The model source codes (GitHub commits) used in the simulations can be found on Zenodo under DOI 10.5281/zenodo.4668865. The E3SMv1 model's master DOI is 10.11578/E3SM/dc.20180418.36, see https://www.osti.gov/doecode/biblio/10475.
description: This research was supported by the Laboratory Directed Research and Development Program at Pacific Northwest National Laboratory (PNNL), a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy under contract DE-AC05-76RL01830. Kai Zhang was also supported by the Office of Science of the U.S. Department of Energy as part of the Earth and Environmental Systems Modeling Program, via the Energy Exascale Earth System Model (E3SM) project within the Earth System Model Development program area.
DOI: 10.5281/zenodo.5201572
title: Data for the analyses in Zhang et. al. (2021, GMDD)

description: This archive contains the data and figures for the analyses in Zhang et al. (2021, GMDD). Included are annual and monthly averages of various model output variables from simulations conducted using the E3SM Atmosphere Model version 0 (EAMv0) and version 1 (EAMv1). The model source codes (GitHub commits) used in the simulations can be found on Zenodo under DOI 10.5281/zenodo.5202746. The E3SMv1 model's master DOI is 10.11578/E3SM/dc.20180418.36, see https://www.osti.gov/doecode/biblio/10475.
description: This research was supported by the Laboratory Directed Research and Development Program at Pacific Northwest National Laboratory (PNNL), a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy under contract DE-AC05-76RL01830. Kai Zhang was also supported by the Office of Science of the U.S. Department of Energy as part of the Earth and Environmental Systems Modeling Program, via the Energy Exascale Earth System Model (E3SM) project within the Earth System Model Development program area.
DOI: 10.5281/zenodo.5228815
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.6084/m9.figshare.14462040
title: Data sets used in publication

description: Data supporting the publication "Harmonic radar tracking reveals that honeybee drones navigate between multiple aerial leks" (2021) iScience. Joseph Woodgate, James Makinson, Natacha Rossi, Ka Lim, Andrew Reynolds, Christopher Rawlings & Lars Chittka.
DOI: 10.5281/zenodo.5228832
title: Minerando Motivações para Aplicação de Extract Method: Um Estudo Preliminar

description: Conjuntos de dados utilizados na pesquisa.
DOI: 10.5281/zenodo.5228831
title: Minerando Motivações para Aplicação de Extract Method: Um Estudo Preliminar

description: Conjuntos de dados utilizados na pesquisa.
DOI: 10.13023/kgs.data.2021.04
title: StateMap 2020-2021
title: New Surficial Geologic Mapping along the I-65 Corridor in Hardin County, Kentucky

description: This dataset characterizes the types and distributions of surficial geologic materials in the Cecilia, Constantine, Howe Valley, and Sonora 7.5-minute quadrangles. The primary goal for this mapping project was to identify and map the spatial distribution and understand the mechanical and chemical properties of surficial geologic materials in a rapidly developing area of Kentucky. This new dataset will have immediate utility to a range of users in local, state, and Federal agencies that are working on applications that rely on accurate and detailed surficial geologic data for geotechnical planning, evaluation of water resources, and geologic hazard assessment (karst, landslide, radon).
description: © 2021 University of Kentucky
DOI: 10.6084/m9.figshare.15982313
title: Additional file 1 of Should international borders re-open? The impact of travel restrictions on COVID-19 importation risk

description: Additional file 1 Ranking of importation sources. A full ranking of source countries for COVID-19 importations into Australia (.csv).
DOI: 10.6084/m9.figshare.15982313.v1
title: Additional file 1 of Should international borders re-open? The impact of travel restrictions on COVID-19 importation risk

description: Additional file 1 Ranking of importation sources. A full ranking of source countries for COVID-19 importations into Australia (.csv).
DOI: 10.6084/m9.figshare.15982316
title: Additional file 2 of Should international borders re-open? The impact of travel restrictions on COVID-19 importation risk

description: Additional file 2 Estimated COVID-19 incidence rates. The estimated incidence rates and their 95% confidence intervals are shown and compared to those reported by the ECDC (.csv).
DOI: 10.6084/m9.figshare.15982316.v1
title: Additional file 2 of Should international borders re-open? The impact of travel restrictions on COVID-19 importation risk

description: Additional file 2 Estimated COVID-19 incidence rates. The estimated incidence rates and their 95% confidence intervals are shown and compared to those reported by the ECDC (.csv).
DOI: 10.6084/m9.figshare.15982328.v1
title: Additional file 2 of Sodium valproate increases activity of the sirtuin pathway resulting in beneficial effects for spinocerebellar ataxia-3 in vivo

description: Additional file 2: Table of proteins identified in MJD transgenic zebrafish from mass spectrometry.
DOI: 10.6084/m9.figshare.15982328
title: Additional file 2 of Sodium valproate increases activity of the sirtuin pathway resulting in beneficial effects for spinocerebellar ataxia-3 in vivo

description: Additional file 2: Table of proteins identified in MJD transgenic zebrafish from mass spectrometry.
DOI: 10.6084/m9.figshare.14880627
title: Additional file 3 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 3: Table S1. List of OA regulated genes (DEGs).
DOI: 10.6084/m9.figshare.14880630
title: Additional file 4 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 4: Table S2. OA regulated Upstream Regulators according to IPA analysis.
DOI: 10.6084/m9.figshare.14880630.v1
title: Additional file 4 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 4: Table S2. OA regulated Upstream Regulators according to IPA analysis.
DOI: 10.6084/m9.figshare.14880627.v1
title: Additional file 3 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 3: Table S1. List of OA regulated genes (DEGs).
DOI: 10.6084/m9.figshare.14880633
title: Additional file 5 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 5: Table S3. OA regulated Canonical Pathways according to IPA analysis.
DOI: 10.6084/m9.figshare.14880636
title: Additional file 6 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 6: Table S4. OA regulated Diseases and Functions according to IPA analysis.
DOI: 10.6084/m9.figshare.14880636.v1
title: Additional file 6 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 6: Table S4. OA regulated Diseases and Functions according to IPA analysis.
DOI: 10.6084/m9.figshare.14880633.v1
title: Additional file 5 of Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition

description: Additional file 5: Table S3. OA regulated Canonical Pathways according to IPA analysis.
DOI: 10.6084/m9.figshare.15982455
title: Additional file 2 of Genetic diversity and main functional composition of Lingzhi strains from main producing areas in China

description: Additional file 2. Statistics of annotation results for each sample.
DOI: 10.6084/m9.figshare.15982455.v1
title: Additional file 2 of Genetic diversity and main functional composition of Lingzhi strains from main producing areas in China

description: Additional file 2. Statistics of annotation results for each sample.
DOI: 10.6084/m9.figshare.15982458
title: Additional file 3 of Genetic diversity and main functional composition of Lingzhi strains from main producing areas in China

description: Additional file 3. The homogeneity of variance test and Kruskal-Wallis test of the spleen cell proliferation rate of each sample.
DOI: 10.6084/m9.figshare.15982458.v1
title: Additional file 3 of Genetic diversity and main functional composition of Lingzhi strains from main producing areas in China

description: Additional file 3. The homogeneity of variance test and Kruskal-Wallis test of the spleen cell proliferation rate of each sample.
DOI: 10.6084/m9.figshare.15982298
title: Additional file 2 of ExOrthist: a tool to infer exon orthologies at any evolutionary distance

description: Additional file 2. Contains Table S1 (Orthogroups output from compare_exon_sets).
DOI: 10.6084/m9.figshare.15982301.v1
title: Additional file 3 of ExOrthist: a tool to infer exon orthologies at any evolutionary distance

description: Additional file 3: Table S2. (Pairwise comparison output from compare_exon_sets).
DOI: 10.6084/m9.figshare.15982298.v1
title: Additional file 2 of ExOrthist: a tool to infer exon orthologies at any evolutionary distance

description: Additional file 2. Contains Table S1 (Orthogroups output from compare_exon_sets).
DOI: 10.6084/m9.figshare.15982301
title: Additional file 3 of ExOrthist: a tool to infer exon orthologies at any evolutionary distance

description: Additional file 3: Table S2. (Pairwise comparison output from compare_exon_sets).
DOI: 10.5519/qd.7ec9qrba
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (187 records)
DOI: 10.5519/qd.ymo826dw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (25 records)
DOI: 10.6084/m9.figshare.14844222
title: Predator-cue induced plasticity of defensive morphology and behavior in planthoppers facilitate the survival from predation

description: Predators can induce morphological plasticity in prey through selection driven by predation risk. However, defense plasticity is rarely reported in insects, let alone trans-generational plasticity, the underlying mechanisms and attention of such plasticity devoted to pest control and ecosystem evolution. Here we examined the morphological plasticity of small brown planthoppers (SBPHs), <i>Laodelphax striatellus</i>, elicited by caged predators, <i>Paederus fuscipes</i> in the parent or F1 generations and uncover the risk cues mediating these effects. We also uncovered the survival outcomes in SBPHs with predator-induced defensive morphological traits by examining their survival probability and behavioral plasticity. Results showed caged predators or predator odor cue could enhance a higher proportion of long-winged, female SBPHs in the parent and F1 generation, but the proportion of males neither short- nor long- winged forms were affected. The visual cue from predators elicited weaker effects. Surprisingly, we discovered these long-winged forms suffer a lower predation rate when attacked by <i>P. fuscipes, </i>owing to an enhanced agility level. Our results suggest the within- and trans-generational plasticity of induced defenses may cause profound effects on SBPH population dynamics and prey-predator interaction. Understanding this interaction and mechanisms may illuminate the context of ecosystem evolution, help to predict pest dispersal or migration, which contributes to pest control.
DOI: 10.6084/m9.figshare.14844222.v3
title: Predator-cue induced plasticity of defensive morphology and behavior in planthoppers facilitate the survival from predation

description: Predators can induce morphological plasticity in prey through selection driven by predation risk. However, defense plasticity is rarely reported in insects, let alone trans-generational plasticity, the underlying mechanisms and attention of such plasticity devoted to pest control and ecosystem evolution. Here we examined the morphological plasticity of small brown planthoppers (SBPHs), <i>Laodelphax striatellus</i>, elicited by caged predators, <i>Paederus fuscipes</i> in the parent or F1 generations and uncover the risk cues mediating these effects. We also uncovered the survival outcomes in SBPHs with predator-induced defensive morphological traits by examining their survival probability and behavioral plasticity. Results showed caged predators or predator odor cue could enhance a higher proportion of long-winged, female SBPHs in the parent and F1 generation, but the proportion of males neither short- nor long- winged forms were affected. The visual cue from predators elicited weaker effects. Surprisingly, we discovered these long-winged forms suffer a lower predation rate when attacked by <i>P. fuscipes, </i>owing to an enhanced agility level. Our results suggest the within- and trans-generational plasticity of induced defenses may cause profound effects on SBPH population dynamics and prey-predator interaction. Understanding this interaction and mechanisms may illuminate the context of ecosystem evolution, help to predict pest dispersal or migration, which contributes to pest control.
DOI: 10.6084/m9.figshare.14844222.v2
title: Predator cues induced plasticity of defensive morphology and behavior in planthoppers facilitates survival from predation

description: Predators can induce morphological plasticity in prey through selection driven by predation risk. However, defense plasticity is rarely reported in insects, let alone trans-generational plasticity, the underlying mechanisms and attention of such plasticity devoted to pest control and ecosystem evolution. Here we examined the morphological plasticity of small brown planthoppers (SBPHs), <i>Laodelphax striatellus</i>, elicited by caged predators, <i>Paederus fuscipes</i> in the parent or F1 generations and uncover the risk cues mediating these effects. We also uncovered the survival outcomes in SBPHs with predator-induced defensive morphological traits by examining their survival probability and behavioral plasticity. Results showed caged predators or predator odor cue could enhance a higher proportion of long-winged, female SBPHs in the parent and F1 generation, but the proportion of males neither short- nor long- winged forms were affected. The visual cue from predators elicited weaker effects. Surprisingly, we discovered these long-winged forms suffer a lower predation rate when attacked by <i>P. fuscipes, </i>owing to an enhanced agility level. Our results suggest the within- and trans-generational plasticity of induced defenses may cause profound effects on SBPH population dynamics and prey-predator interaction. Understanding this interaction and mechanisms may illuminate the context of ecosystem evolution, help to predict pest dispersal or migration, which contributes to pest control.
DOI: 10.5281/zenodo.5220431
title: Net community production, nutrients, and hydrographic parameters in the South China Sea in summer 2017

description: In summer, the Vietnam Offshore Current (VOC) and the Kuroshio intrusion are two important processes provoking considerable environmental fluctuations in the South China Sea (SCS). Net community production (NCP) is an important proxy of biological pump strength and can be estimated based on the dissolved oxygen to argon ratio (O<sub>2</sub>/Ar) in the mixed layer. To determine the influence of the VOC and Kuroshio intrusion on the NCP in the oligotrophic SCS, we conducted high-resolution underway measurements of O<sub>2</sub>/Ar and hydrographic parameters using membrane inlet mass spectrometry (MIMS, HPR-40, Hiden, UK) and multi-parameter water quality logger (RBR Maestro, Canada) during the cruise in the northeastern SCS in summer 2017. NCP in the mixed layer was estimated using the supersaturation of O<sub>2</sub>/Ar (Delta O<sub>2</sub>/Ar) and gas transfer velocity (k), All the underway data were compiled into the 5-min interval. To monitor the nutritive fluctuations induced by the VOC and Kuroshio intrusion, we also collected surface water samples from Niskin bottles at sampling stations for the nutrients analysis, the nutrients were then determined by an auto-analyzer. The mixed layer depth (MLD) was calculated at stations where CTD casts were made based on potential density. We divided the cruise into three phases (Phase 1, 2, and 3); Phase 1 was dominated by the Kuroshio intrusion, while Phase 3 was influenced by the VOC. Because the upwelling driven by cyclonic eddies and typhoons could introduce considerable uncertainties to the NCP result, we excluded the data obtained in the upwelling regions. The cells with yellow background represent the data influenced by upwelling. Both original and upwelling-excluded data were presented in the data file.