cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18141/1755399
title: Cross-Well Seismic Monitoring of CO2 Injected Into the A-1 Carbonate and Brown Niagaran Formations at the Chester 16 Reef

description: A cross-well seismic survey was acquired in the Chester 16 reef from September 9 to 14, 2018 to attempt to locate 85,000 tonnes of carbon dioxide (CO2) that were injected into the A-1 Carbonate and Brown Niagaran Formations between February 2013 and September 2018.
DOI: 10.18141/1755400
title: Distributed Acoustic Sensing (DAS) Seismic Monitoring of CO2 Injected for Enhanced Oil Recovery in Northern Michigan

description: As part of the Midwest Regional Carbon Sequestration Partnership (MRCSP) Phase III project, a monitoring study was conducted to assess the effectiveness of DAS (Distributed Acoustic Sensing) -based VSP (Vertical Seismic Profiling) technology for delineating CO2 injected into the Silurian-age pinnacle reefs in northern Michigan, the host rocks for the MRCSP Phase III demonstration project. The DAS VSP study was conducted in the Chester 16 reef, one of several reefs in Otsego County Michigan that is operated by Core Energy, LLC of Traverse City, Michigan.
DOI: 10.18141/1755411
title: Life Cycle Analysis of Greenhouse Gas Emissions for the Niagaran Reef Complex CO2-EOR Operations

description: A greenhouse gas emissions life cycle analysis(LCA)was completed for 22years of carbon dioxide-enhanced oil recovery (CO2-EOR)operations at the Niagaran reef complex in the northern Michigan Basin based on research by the Midwest Regional Carbon Sequestration Partnership (MRCSP). The objective of the greenhouse gas LCA was to account for the total greenhouse gas emissions generated through the CO2-EOR process.
DOI: 10.6084/m9.figshare.13520644.v1
title: Additional file 1 of Nest site selection and reproductive parameters of the threatened Atlantic Royal Flycatcher (Onychorhynchus swainsoni) and their significance for conservation

description: Additional file 1: Stream variables and nest site selection data.
DOI: 10.6084/m9.figshare.13520644
title: Additional file 1 of Nest site selection and reproductive parameters of the threatened Atlantic Royal Flycatcher (Onychorhynchus swainsoni) and their significance for conservation

description: Additional file 1: Stream variables and nest site selection data.
DOI: 10.6084/m9.figshare.13520719.v1
title: Additional file 4 of Exploring protocol bias in airway microbiome studies: one versus two PCR steps and 16S rRNA gene region V3 V4 versus V4

description: Additional file 4: Table S3. The table presents an overview of the sequence count per ASV obtained after V4 sequencing of mock community sample HM-783D following setup 3.
DOI: 10.6084/m9.figshare.13520722.v1
title: Additional file 5 of Exploring protocol bias in airway microbiome studies: one versus two PCR steps and 16S rRNA gene region V3 V4 versus V4

description: Additional file 5: Table S4. The table presents an overview of the relative abundance of ASVs mapping to Enterobacteriaceae per sample across all sample types and setups.
DOI: 10.25345/c55b75
title: MassIVE MSV000086659 - Making_a_test_repository_with_sildenafil_MASST_test
title: This is a test repository for validating MASST_USI workflow.
DOI: 10.6084/m9.figshare.13520862.v1
title: Additional file 13 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 13: Table S13. ROH island regions (bins of one Mb) for the studied sheep populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520871.v1
title: Additional file 16 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 16: Table S16. ROH island regions (bins of one Mb) for the studied water buffalo populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520856.v1
title: Additional file 11 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 11: Table S11. ROH island regions (bins of one Mb) for the studied pig populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520874.v1
title: Additional file 1 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 1: Table S1. ROH island regions (bins of one Mb) for the studied cat populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520859.v1
title: Additional file 12 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 12: Table S12. ROH island regions (bins of one Mb) for the studied pig populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520877.v1
title: Additional file 2 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 2: Table S2. ROH island regions (bins of one Mb) for the studied cat populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520880.v1
title: Additional file 3 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 3: Table S3. ROH island regions (bins of one Mb) for the studied cattle populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520883.v1
title: Additional file 4 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 4: Table S4. ROH island regions (bins of one Mb) for the studied cattle populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520868.v1
title: Additional file 15 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 15: Table S15. ROH island regions (bins of one Mb) for the studied water buffalo populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520889.v1
title: Additional file 6 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 6: Table S6. ROH island regions (bins of one Mb) for the studied dog populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520886.v1
title: Additional file 5 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 5: Table S5. ROH island regions (bins of one Mb) for the studied dog populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520895.v1
title: Additional file 8 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 8: Table S8. ROH island regions (bins of one Mb) for the studied goat populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520898.v1
title: Additional file 9 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 9: Table S9. ROH island regions (bins of one Mb) for the studied horse populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520904.v1
title: Additional file 11 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 11: Table S11. Primers used for RT-PCR analysis.
DOI: 10.6084/m9.figshare.13520901.v1
title: Additional file 10 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 10: Table S10. siRNA used for knockdown experiments in A549.
DOI: 10.6084/m9.figshare.13520892.v1
title: Additional file 7 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 7: Table S7. ROH island regions (bins of one Mb) for the studied goat populations: overview for all chromosomes. Within each cell, the genomic region(s) with an ROH island are given (in Mb).
DOI: 10.6084/m9.figshare.13520913.v1
title: Additional file 14 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 14. Aberrant splicing isoform dataset of clinical specimens (gtf). The full-length structures of isoforms detected in our dataset of clinical specimens.
DOI: 10.6084/m9.figshare.13520865.v1
title: Additional file 14 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 14: Table S14. ROH island regions (bins of one Mb) for the studied sheep populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520922.v1
title: Additional file 2 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 2: Table S2. General statistics of nanopore sequencing in NSCLC cell lines.
DOI: 10.6084/m9.figshare.13520937.v1
title: Additional file 7 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 7: Table S7. General statistics of nanopore sequencing in clinical samples.
DOI: 10.6084/m9.figshare.13520910.v1
title: Additional file 13 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 13. Aberrant splicing isoform dataset of cell lines (gtf). The full-length structures of isoforms detected in our dataset of cell lines.
DOI: 10.6084/m9.figshare.13520934.v1
title: Additional file 6 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 6: Table S6. Clinical information on clinical samples.
DOI: 10.6084/m9.figshare.13520940.v1
title: Additional file 8 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 8: Table S8. The number of aberrant splice isoforms in clinical samples.
DOI: 10.6084/m9.figshare.13520919.v1
title: Additional file 1 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 1: Table S1. General information on NSCLC cell lines.
DOI: 10.6084/m9.figshare.13520925.v1
title: Additional file 3 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 3: Table S3. The number of aberrant splice isoforms in NSCLC cell lines.
DOI: 10.6084/m9.figshare.13520928.v1
title: Additional file 4 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 4: Table S4. The number of somatic mutations in NSCLC cell lines.
DOI: 10.6084/m9.figshare.13520853.v1
title: Additional file 10 of A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

description: Additional file 10: Table S10. ROH island regions (bins of one Mb) for the studied horse populations: details per chromosome. Within the Excel file, there is one tab for each chromosome with ROH island details per population. Cells are marked with an ‘x’ if an ROH island appeared in the specific region.
DOI: 10.6084/m9.figshare.13520931.v1
title: Additional file 5 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 5: Table S5. The neoantigen candidates derived from isoforms detected by proteome analysis.
DOI: 10.6084/m9.figshare.13520943.v1
title: Additional file 9 of Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

description: Additional file 9: Table S9. The number of somatic mutations in clinical samples.
DOI: 10.6084/m9.figshare.13521046.v1
title: Additional file 4 of Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

description: Additional file 4: Table S2. Description of the intervals identified as selective sweeps between Cuban and French Charolais.
DOI: 10.6084/m9.figshare.13521037.v1
title: Additional file 1 of Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

description: Additional file 1: Table S1. Description of the samples included in this study.
DOI: 10.6084/m9.figshare.13521049.v1
title: Additional file 5 of Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

description: Additional file 5: Table S3. Putative regulatory SNPs (rSNPs) located upstream of interesting genes.
DOI: 10.6084/m9.figshare.13521058.v1
title: Additional file 1 of Susceptibility to the novel coronavirus disease (COVID-19) is associated with ABO and Rh blood groups: a case-control study from Afghanistan

description: Additional file 1.
DOI: 10.6084/m9.figshare.13521099.v1
title: Additional file 1 of Identification of epigenome-wide DNA methylation differences between carriers of APOE ε4 and APOE ε2 alleles

description: Additional file 1: Table S1: Sample demographic information for the discovery and replication samples and the individual APOE genotype groups within the discovery sample. Table S2. Differentially methylated positions (DMPs) showing replicated association with APOE ε4 vs. ε2 carrier status and sensitivity analyses results. Table S3. Pairwise comparison of DNA methylation levels between APOE genotypes for each of the 20 CpGs identified as being a DMP in the meta-analysis of the discovery and replication samples. Table S4. Gene ontology (GO) terms showing significant enrichment (P ≤ 2.21 × 10−6) for the CpG sites identified as showing suggestive (P ≤ 1 × 10−5) association with APOE ε4 vs. ε2 carrier status through DMP analysis or which contributed to a significant DMR. Table S5. Assessment of total, HDL or non-HDL cholesterol as potential mediators of APOE ε4 vs. ε2 carrier status on methylation. Table S6. meQTLs for the APOE ε4 vs. ε2-associated DMPs and DMR sites. Table S7. meQTLs for APOE ε4 vs. ε2-associated DMPs and DMR sites grouped by genomic region. Table S8. GWAS catalogue entries for the meQTLs associated with the APOE ε4 vs. ε2-associated DMPs and DMR sites.
DOI: 10.6084/m9.figshare.11454075
title: Additional file 2 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 2: R Script: Wilcoxon signed-rank test for independent test set evaluation.
DOI: 10.6084/m9.figshare.11454069
title: Additional file 1 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 1: Excel file: Supplementary tables S1–S6 for additional results.
DOI: 10.6084/m9.figshare.11454069.v1
title: Additional file 1 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 1: Excel file: Supplementary tables S1–S6 for additional results.
DOI: 10.6084/m9.figshare.12422282
title: Additional file 1 of Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions

description: Additional file 1: Table S1 Nomenclature of the transgenic aspen lines used in the study. Table S2 Height (± SD) in the 2-month-old transgenic and control plants in greenhouse conditions and in the 6-month-old transgenic and control plants in semi-natural conditions. Figure S1. The original, unprocessed and uncropped version of Fig. 1. RT-PCR analysis of the sp-Xeg gene expression in transgenic aspen plants (expected amplicon size 762 bp). M - standard molecular marker 1 kb (SibEnzyme), Н2О - negative reaction control, pBI-Xeg - plasmid DNA (positive control), Pt - non-transgenic control line, Gus-1-5a - transgenic control line. Figure S2 The original, unprocessed and uncropped version of Fig. 2. Western blot analysis of protein extracts of transgenic aspens carrying the recombinant gene sp-Xeg. M - standard protein molecular marker, Xeg - fungal extract, Pt - non-transgenic control, Gus-1-5a - transgenic negative control, Xeg-1-1a, Xeg-1-1b, Xeg-1-1c, Xeg-2-1b, Xeg-2-3b, and Xeg-2-5a are transgenic lines. Figure S3. Libriform wood fibers of transgenic and control plants.
DOI: 10.6084/m9.figshare.12422282.v2
title: Additional file 1 of Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions

description: Additional file 1: Table S1 Nomenclature of the transgenic aspen lines used in the study. Table S2 Height (± SD) in the 2-month-old transgenic and control plants in greenhouse conditions and in the 6-month-old transgenic and control plants in semi-natural conditions. Figure S1. The original, unprocessed and uncropped version of Fig. 1. RT-PCR analysis of the sp-Xeg gene expression in transgenic aspen plants (expected amplicon size 762 bp). M - standard molecular marker 1 kb (SibEnzyme), Н2О - negative reaction control, pBI-Xeg - plasmid DNA (positive control), Pt - non-transgenic control line, Gus-1-5a - transgenic control line. Figure S2 The original, unprocessed and uncropped version of Fig. 2. Western blot analysis of protein extracts of transgenic aspens carrying the recombinant gene sp-Xeg. M - standard protein molecular marker, Xeg - fungal extract, Pt - non-transgenic control, Gus-1-5a - transgenic negative control, Xeg-1-1a, Xeg-1-1b, Xeg-1-1c, Xeg-2-1b, Xeg-2-3b, and Xeg-2-5a are transgenic lines. Figure S3. Libriform wood fibers of transgenic and control plants.
DOI: 10.6084/m9.figshare.12422282.v1
title: Additional file 1 of Various effects of the expression of the xyloglucanase gene from Penicillium canescens in transgenic aspen under semi-natural conditions

description: Additional file 1: Table S1 Nomenclature of the transgenic aspen lines used in the study. Table S2 Height (± SD) in the 2-month-old transgenic and control plants in greenhouse conditions and in the 6-month-old transgenic and control plants in semi-natural conditions. Figure S1. The original, unprocessed and uncropped version of Fig. 1. RT-PCR analysis of the sp-Xeg gene expression in transgenic aspen plants (expected amplicon size 762 bp). M - standard molecular marker 1 kb (SibEnzyme), Н2О - negative reaction control, pBI-Xeg - plasmid DNA (positive control), Pt - non-transgenic control line, Gus-1-5a - transgenic control line. Figure S2 The original, unprocessed and uncropped version of Fig. 2. Western blot analysis of protein extracts of transgenic aspens carrying the recombinant gene sp-Xeg. M - standard protein molecular marker, Xeg - fungal extract, Pt - non-transgenic control, Gus-1-5a - transgenic negative control, Xeg-1-1a, Xeg-1-1b, Xeg-1-1c, Xeg-2-1b, Xeg-2-3b, and Xeg-2-5a are transgenic lines. Figure S3. Libriform wood fibers of transgenic and control plants.
DOI: 10.6084/m9.figshare.13521244
title: Additional file 1 of Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic

description: Additional file 1. List of water quality kits reported in this study, associated metadata for each kit, and water quality results.
DOI: 10.6084/m9.figshare.13521253.v1
title: Additional file 4 of Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic

description: Additional file 4. Metadata file for 16S rRNA amplicon data analysis. The tab “DR_MiMarks-Metadata” contains all metadata associated with amplicon sequence data deposited in the SRA. The tab “Key” contains an explanation of all column headers.
DOI: 10.6084/m9.figshare.13521244.v1
title: Additional file 1 of Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic

description: Additional file 1. List of water quality kits reported in this study, associated metadata for each kit, and water quality results.
DOI: 10.6084/m9.figshare.13521253
title: Additional file 4 of Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic

description: Additional file 4. Metadata file for 16S rRNA amplicon data analysis. The tab “DR_MiMarks-Metadata” contains all metadata associated with amplicon sequence data deposited in the SRA. The tab “Key” contains an explanation of all column headers.