cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6175616.v1
title: Additional file 25: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Supporting sequence data for DW7 and SD20. Sequence data for DW7 (SRR4026621-2) and SD20 (SRR06572) assembled for analysis in this study. (TXT 9982Â kb)
DOI: 10.6084/m9.figshare.6175598
title: Additional file 21: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: M4 Predicted Secondary Metabolite PKS and NRPS gene clusters. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.6175598.v1
title: Additional file 21: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: M4 Predicted Secondary Metabolite PKS and NRPS gene clusters. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.6175583
title: Additional file 18: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Predicted effector homologous genes non-synonymous and synonymous changes. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.6175583.v1
title: Additional file 18: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Predicted effector homologous genes non-synonymous and synonymous changes. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.6175580
title: MOESM6 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 6. Uniprot accession IDs, protein names, confidence values, unused scores, and number of sequences identified with 95% confidence for each protein in early and intermediate MFC anode biofilms.
DOI: 10.6084/m9.figshare.6175580.v1
title: MOESM6 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 6. Uniprot accession IDs, protein names, confidence values, unused scores, and number of sequences identified with 95% confidence for each protein in early and intermediate MFC anode biofilms.
DOI: 10.6084/m9.figshare.6175574
title: MOESM5 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 5. Peptide sequences and confidence values for early and intermediate biofilm samples.
DOI: 10.6084/m9.figshare.6175574.v1
title: MOESM5 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 5. Peptide sequences and confidence values for early and intermediate biofilm samples.
DOI: 10.6084/m9.figshare.6175571
title: Additional file 16: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Enrichment scores for functional annotations of orthologous groups under diversifying selection. (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.6175571.v1
title: Additional file 16: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Enrichment scores for functional annotations of orthologous groups under diversifying selection. (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.6175568
title: Additional file 15: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Protein clustering of genes from all Ptr isolates orthologous groups. (TXT 3252Â kb)
DOI: 10.6084/m9.figshare.6175568.v1
title: Additional file 15: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Protein clustering of genes from all Ptr isolates orthologous groups. (TXT 3252Â kb)
DOI: 10.6084/m9.figshare.6175565
title: MOESM4 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 4. Table of 16S rRNA gene MiSeq OTUs.
DOI: 10.6084/m9.figshare.6175565.v1
title: MOESM4 of Meta-proteomic analysis of protein expression distinctive to electricity-generating biofilm communities in air-cathode microbial fuel cells

description: Additional file 4. Table of 16S rRNA gene MiSeq OTUs.
DOI: 10.6084/m9.figshare.6175562
title: Additional file 5: of Association between uncooperativeness and the glucose metabolism of patients with chronic behavioral disorders after severe traumatic brain injury: a cross-sectional retrospective study

description: Table S3. Comparison of glucose uptake in patients who had severe traumatic brain injury, with or without non-verbal symptoms defined by the Brief Psychiatric Rating Scale classification system (Anxiety, Feelings of Guilt, Mannerisms and Posturing, Depressive Mood, Hostility, Hallucinatory Behavior, Motor Retardation, Blunted Affect, Excitement). Data are presented for the right hemisphere, left hemisphere, right thalamus, left thalamus, hemispheric LR ratio, and thalamic LR ratio. Glucose uptake is based on 18F-fluorodeoxyglucose positron emission tomography/computed tomography.*Pâ
DOI: 10.6084/m9.figshare.6175562.v1
title: Additional file 5: of Association between uncooperativeness and the glucose metabolism of patients with chronic behavioral disorders after severe traumatic brain injury: a cross-sectional retrospective study

description: Table S3. Comparison of glucose uptake in patients who had severe traumatic brain injury, with or without non-verbal symptoms defined by the Brief Psychiatric Rating Scale classification system (Anxiety, Feelings of Guilt, Mannerisms and Posturing, Depressive Mood, Hostility, Hallucinatory Behavior, Motor Retardation, Blunted Affect, Excitement). Data are presented for the right hemisphere, left hemisphere, right thalamus, left thalamus, hemispheric LR ratio, and thalamic LR ratio. Glucose uptake is based on 18F-fluorodeoxyglucose positron emission tomography/computed tomography.*Pâ
DOI: 10.6084/m9.figshare.6175535
title: Additional file 3: of Association between uncooperativeness and the glucose metabolism of patients with chronic behavioral disorders after severe traumatic brain injury: a cross-sectional retrospective study

description: Table S2. Clinical information for 14 patients who had severe traumatic brain injury and provided 18F-fluorodeoxyglucose positron emission tomography/computed tomography images. Patients are separated based on whether or not they were diagnosed with a behavioral disorder. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6175535.v1
title: Additional file 3: of Association between uncooperativeness and the glucose metabolism of patients with chronic behavioral disorders after severe traumatic brain injury: a cross-sectional retrospective study

description: Table S2. Clinical information for 14 patients who had severe traumatic brain injury and provided 18F-fluorodeoxyglucose positron emission tomography/computed tomography images. Patients are separated based on whether or not they were diagnosed with a behavioral disorder. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6175532
title: Additional file 12: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Proteogenomics extracellular and intracellular data for Ptr race 1 isolates 11,137, DW5 and M4. (TXT 3140Â kb)
DOI: 10.6084/m9.figshare.6175532.v1
title: Additional file 12: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

description: Proteogenomics extracellular and intracellular data for Ptr race 1 isolates 11,137, DW5 and M4. (TXT 3140Â kb)
DOI: 10.6084/m9.figshare.6175511
title: Additional file 3: of Serial MRIs provide novel insight into natural history of optic pathway gliomas in patients with neurofibromatosis 1

description: Table S3. Published cases of spontaneous regression of symptomatic and asymptomatic OPG in NF1 patients. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6175511.v1
title: Additional file 3: of Serial MRIs provide novel insight into natural history of optic pathway gliomas in patients with neurofibromatosis 1

description: Table S3. Published cases of spontaneous regression of symptomatic and asymptomatic OPG in NF1 patients. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6175496
title: Additional file 2: of Serial MRIs provide novel insight into natural history of optic pathway gliomas in patients with neurofibromatosis 1

description: Table S2. Age-adjusted associations of clinical features typical for NF1 with the presence of OPG. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.6175496.v1
title: Additional file 2: of Serial MRIs provide novel insight into natural history of optic pathway gliomas in patients with neurofibromatosis 1

description: Table S2. Age-adjusted associations of clinical features typical for NF1 with the presence of OPG. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.6175484
title: Additional file 7: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Results of genotyping and phenotype in three crossed families. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6175484.v1
title: Additional file 7: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Results of genotyping and phenotype in three crossed families. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6175436
title: Additional file 6: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Summary of all mapped markers. (XLSX 475Â kb)
DOI: 10.6084/m9.figshare.6175436.v1
title: Additional file 6: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Summary of all mapped markers. (XLSX 475Â kb)
DOI: 10.6084/m9.figshare.6175418
title: Additional file 5: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Summary of SNP discovery in C. japonica. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6175418.v1
title: Additional file 5: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: Summary of SNP discovery in C. japonica. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6175397
title: Additional file 9 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S6 Number of expressed genes in SKNBE transcriptome data according to biotype. Overview of gene biotypes in Ensemblâ s annotation file, number of expressed genes for each biotype, mean length, and length range. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6175397.v1
title: Additional file 9 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S6 Number of expressed genes in SKNBE transcriptome data according to biotype. Overview of gene biotypes in Ensemblâ s annotation file, number of expressed genes for each biotype, mean length, and length range. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6175367
title: Additional file 7 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S5 Summary statistics for RNA-seq on SKNBE samples. Summary statistics for RNA sequencing of knockdown samples with three different siRNAs targeting EDC3 (siEDC-1, siEDC3-2, siEDC-3) as well as control (siNC) samples relative to three replicate experiments (T1-T3). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6175367.v1
title: Additional file 7 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S5 Summary statistics for RNA-seq on SKNBE samples. Summary statistics for RNA sequencing of knockdown samples with three different siRNAs targeting EDC3 (siEDC-1, siEDC3-2, siEDC-3) as well as control (siNC) samples relative to three replicate experiments (T1-T3). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6175337
title: Additional file 2: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: C. japonica EST sequencing and assembly summary. *BC: Backcross. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.6175337.v1
title: Additional file 2: of Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

description: C. japonica EST sequencing and assembly summary. *BC: Backcross. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.6175331
title: Additional file 1: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

description: Supporting tables. (Tables S1 and S2). (XLS 190 kb)
DOI: 10.6084/m9.figshare.6175331.v1
title: Additional file 1: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

description: Supporting tables. (Tables S1 and S2). (XLS 190 kb)
DOI: 10.6084/m9.figshare.6175319
title: Additional file 5 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S4 Functional enrichment analysis of the DEGs in lymphoblastoid cell line samples. Functional annotation of the 235 DEGs was performed with DAVID [29, 30]. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175319.v1
title: Additional file 5 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S4 Functional enrichment analysis of the DEGs in lymphoblastoid cell line samples. Functional annotation of the 235 DEGs was performed with DAVID [29, 30]. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175310
title: Additional file 4 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S3 Results of differential expression analysis on patientsâ lymphoblastoid cell line samples. Output of differential expression analysis performed with DESeq2 [23] for the 22,123 genes that passed independent filtering. HGNC symbols could be retrieved via biomaRt package for 17,975 genes. (XLS 3186Â kb)
DOI: 10.6084/m9.figshare.6175310.v1
title: Additional file 4 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S3 Results of differential expression analysis on patientsâ lymphoblastoid cell line samples. Output of differential expression analysis performed with DESeq2 [23] for the 22,123 genes that passed independent filtering. HGNC symbols could be retrieved via biomaRt package for 17,975 genes. (XLS 3186Â kb)
DOI: 10.6084/m9.figshare.6175295
title: Additional file 3 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S2 Summary statistics for RNA-seq on patientsâ lymphoblastoid cell line samples. Summary statistics for RNA sequencing of patient (P1, P2) and control (C1, C2) samples. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.6175295.v1
title: Additional file 3 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S2 Summary statistics for RNA-seq on patientsâ lymphoblastoid cell line samples. Summary statistics for RNA sequencing of patient (P1, P2) and control (C1, C2) samples. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.6175256
title: Additional file 1 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S1 EDC3 siRNAs. Sequences of the three siRNAs targeting EDC3 purchased from Invitrogen. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.6175256.v1
title: Additional file 1 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S1 EDC3 siRNAs. Sequences of the three siRNAs targeting EDC3 purchased from Invitrogen. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.6175247
title: Additional file 15 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S12 Functional enrichment analysis of the modules identified by WGCNA. Functional annotation of the modules was performed with DAVID. The table reports the top 15 ranked pathways (by Benjamini adjusted p-value) relative to the genes in the blue module (N = 191), the turquoise module (N = 282), and the brown module (N = 169). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6175247.v1
title: Additional file 15 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S12 Functional enrichment analysis of the modules identified by WGCNA. Functional annotation of the modules was performed with DAVID. The table reports the top 15 ranked pathways (by Benjamini adjusted p-value) relative to the genes in the blue module (N = 191), the turquoise module (N = 282), and the brown module (N = 169). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6175229
title: Additional file 14 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S11 Functional enrichment analysis of protein-protein interaction clusters enriched in DEGs. Functional annotation of the protein clusters 22 (50 genes), 32 (31 genes), and 63 (15 genes) enriched in DEGs was performed with DAVID. The table reports the top 15 ranked (by Benjamini-adjusted p-value) pathways for each cluster. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6175229.v1
title: Additional file 14 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S11 Functional enrichment analysis of protein-protein interaction clusters enriched in DEGs. Functional annotation of the protein clusters 22 (50 genes), 32 (31 genes), and 63 (15 genes) enriched in DEGs was performed with DAVID. The table reports the top 15 ranked (by Benjamini-adjusted p-value) pathways for each cluster. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6175211
title: Additional file 13 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S10 Functional enrichment analysis of the SKNBE DEGs. Functional annotation of the 764 DEGs was performed with DAVID. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175211.v1
title: Additional file 13 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S10 Functional enrichment analysis of the SKNBE DEGs. Functional annotation of the 764 DEGs was performed with DAVID. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175193
title: Additional file 12 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S9 Functional enrichment analysis of DEGs predominantly expressed in brain. Functional annotation of the 117 DEGs predominantly expressed in brain was performed with DAVID. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175193.v1
title: Additional file 12 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S9 Functional enrichment analysis of DEGs predominantly expressed in brain. Functional annotation of the 117 DEGs predominantly expressed in brain was performed with DAVID. The table shows the top enriched terms (Benjamini-adjusted p-value
DOI: 10.6084/m9.figshare.6175184
title: Additional file 5: of Population structure, genetic diversity and downy mildew resistance among Ocimum species germplasm

description: Genotype data. Binary matrix of accessions (rows) and alleles (columns). (XLSX 186Â kb)
DOI: 10.6084/m9.figshare.6175184.v1
title: Additional file 5: of Population structure, genetic diversity and downy mildew resistance among Ocimum species germplasm

description: Genotype data. Binary matrix of accessions (rows) and alleles (columns). (XLSX 186Â kb)
DOI: 10.6084/m9.figshare.6175181
title: Additional file 11 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S8 DEGs predominantly expressed in brain. List of 117 DEGs that are predominantly expressed in brain according to Expression Atlas. The last column shows the geneâ s module membership in WGCNA analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6175181.v1
title: Additional file 11 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S8 DEGs predominantly expressed in brain. List of 117 DEGs that are predominantly expressed in brain according to Expression Atlas. The last column shows the geneâ s module membership in WGCNA analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6175166
title: Additional file 10 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S7 Results of differential expression analysis on SKNBE samples. Output of differential expression analysis performed with DESeq2 [23] for the 16,321 genes that passed independent filtering. HGNC symbols could be retrieved via biomaRt package for 14,159 genes. (XLS 2378Â kb)
DOI: 10.6084/m9.figshare.6175166.v1
title: Additional file 10 of Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability

description: Table S7 Results of differential expression analysis on SKNBE samples. Output of differential expression analysis performed with DESeq2 [23] for the 16,321 genes that passed independent filtering. HGNC symbols could be retrieved via biomaRt package for 14,159 genes. (XLS 2378Â kb)
DOI: 10.6084/m9.figshare.6175046
title: Additional file 2: of Reliability and validity of the Korean version of organizational justice questionnaire

description: The Korean version of organizational justice questionnaire. (HWP 16 kb)
DOI: 10.6084/m9.figshare.6175046.v1
title: Additional file 2: of Reliability and validity of the Korean version of organizational justice questionnaire

description: The Korean version of organizational justice questionnaire. (HWP 16 kb)
DOI: 10.6084/m9.figshare.6174983
title: Additional file 2: of Partial-arm translocations in evolution of malaria mosquitoes revealed by high-coverage physical mapping of the Anopheles atroparvus genome

description: Table S2. Scaffold-paired adjacencies in the An. atroparvus genome assembly. (XLSX 14Â kb)