cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29097569
title: Data from: Molecular signatures of introgressive divergence and selection in contact zones of closely related pine species (<i>Pinus </i>genus)

description: The data is comprised of a .RDS R file containing adegenet's genind object, which includes genomic data of 1558 individuals derived from pure Polish populations of Scots pine (<i>Pinus sylvestris</i>), dwarf mountain pine (<i>Pinus mugo</i>) and hybrid populations of those two species (Bór na Czerwonem, Błędne Skały and Torfowisko pod Zieleńcem). The genomic data was generated using Axiom_PineGAP SNP array. Out of 49,829 SNPs, 7,390 markers were selected after filtering - derived mainly from functional regions of nuclear genome.
DOI: 10.5281/zenodo.15050380
title: The South American MicroBiome Archive (SAMBA)

description: Overview of saMBA

The South American MicroBiome Archive (SAMBA) is the result of a semi-automated search and automated analysis of microbiome studies characterising the gut microbiome of people living in South America.

This data is freely available under the Creative Commons Attribution 4.0 International license (CC BY 4.0). If you use it in your work, please cite our publication:

Valderrama, Benjamin., Calderon-Romero, Paulina., Bastiaanssen, Thomaz F.S., Lavelle, Aonghus., Clarke, Gerard., Cryan, John F., "The South American MicroBiome Archive (saMBA): Enriching the healthy microbiome concept by evaluating uniqueness and biodiversity of neglected populations.", BioRxiv, doi.org/10.1101/2025.04.03.647034

Overview of the workflow

The computational workflow used to build saMBA is hosted in this GitHub repository and can be deployed using this Docker image. Instructions about how to use the software can be found the documentation. The outputs of deploying the workflow (shared in this repository) were then analysed to generate the article. The code used for that analysis can be found in this GitHub repository.
DOI: 10.15468/dl.cxfbnf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clarias gariepinus (Burchell, 1822)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 10.8496,35.9648 10.8496,35.9648 1.8496,44.9648 1.8496,44.9648 10.8496))"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005094-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/almeep
title: Supplementary materials for: Constitutive neural networks for main pulmonary arteries: Discovering the undiscovered

description: This dataset in KU Leuven's research data repository is the supplementary materials for the research paper entitled "Constitutive neural networks for main pulmonary arteries: Discovering the undiscovered". 

Authors: Thibault Vervenne (KU Leuven), Nele Famaey (KU Leuven), Ellen Kuhl (Stanford University) and Mathias Peirlinck (TU Delft).

Citation: Vervenne, T., Peirlinck, M., Famaey, N. et al. Constitutive neural networks for main pulmonary arteries: discovering the undiscovered. Biomech Model Mechanobiol (2025). https://doi.org/10.1007/s10237-025-01930-1

The dataset contains the source data, code, results, and an explanatory readme.txt file.

readme.txt

data\
stretch (F) and nominal stress (P) for n = 8 samples, in axial (11) and circumferential (22) directions. 

code\
CANN4Artery_main_loop.py: main code sample-specific runs of neural network, all fiber angles, fixed and fitted fiber direction
CANN4Artery_main_all-in-one.py: main code for cross-sample feature selection, all fiber angles, fixed and fitted fiber direction
ModelsArtery_p.py: build the invariant strain energy densitity function + stress calculations, as well as the reduced and Holzapfel-Gasser-Ogden models, no regularization and L1 regularization 
PlotArtery_p.py: plot the results for sample-specific runs of neural network
PlotArtery_all.py: plot the results for cross-sample feature selection

Python: 3.9.18 
tensorflow: 2.10.0
pandas: 2.2.2
numpy: 1.26.4
matplotlib: 3.8.4
sklearn: 1.5.1

results\
results-sample-specific.xlsx: spreadsheet containing results for sample-specific runs of neural network, all samples, all fiber angles, fixed and fitted fiber direction, no regularization and L1 regularization
results-cross-sample.xlsx: spreadsheet containing results neural network for cross-sample feature selection, all fiber angles, fixed and fitted fiber direction, no regularization and L1 regularization
results-reduced.xlsx: spreadsheet containing neural network results for reduced constitutive equation, all fiber angles, fixed and fitted fiber direction
results-hgo.xlsx: spreadsheet containing neural network results for Holzapfel-Gasser-Ogden constitutive equation, all fiber angles, fixed and fitted fiber direction, + classical Holzapfel-Gasser-Ogden material parameter fitting results
description: python, 3.9
description: tensorflow, 2.10
DOI: 10.15468/dl.h7u9bh
title: Occurrence Download

description: A dataset containing 457615 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Algeria"
 ]
}

 The dataset includes 457615 records from 1176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017629-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15348462
title: ResearchData for Article 'Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River'

description: This database contains the raw data and figures for Original Reseaech Paper "Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River", as fully described in the manuscript submitted to CATENA:

Zhang, X.Z.Y., Xia, J.Q., Cheng, Y.F., et al.  Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River. (in Submission)

This database  mainly includes:

-model verification results of the 2020 and 2021 flood season between the Tongguan-Lijin Reach, which are simulated using the team's original morphodynamic model.

-multi-scenarios results under different operation parameters.
DOI: 10.5281/zenodo.15348463
title: ResearchData for Article 'Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River'

description: This database contains the raw data and figures for Original Reseaech Paper "Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River", as fully described in the manuscript submitted to CATENA:

Zhang, X.Z.Y., Xia, J.Q., Cheng, Y.F., et al.  Modelling study on enhancing holistic sediment transport efficiency in a reservoir-river coupled system of the Middle and Lower Yellow River. (in Submission)

This database  mainly includes:

-model verification results of the 2020 and 2021 flood season between the Tongguan-Lijin Reach, which are simulated using the team's original morphodynamic model.

-multi-scenarios results under different operation parameters.
DOI: 10.15468/dl.d7zfme
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((-102 -26,103 -26,103 28,-102 28,-102 -26))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Adiantum venustum D.Don"
 ]
}

 The dataset includes 153 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017643-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b85gkb
title: Occurrence Download

description: A dataset containing 298084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "GadmGid is KWT",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 298084 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017630-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2bjc5f
title: CCDC 2160674: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjc9k
title: CCDC 2160678: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjccm
title: CCDC 2160680: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjcmw
title: CCDC 2160688: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjct2
title: CCDC 2160694: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjcx5
title: CCDC 2160697: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjcz7
title: CCDC 2160699: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2022|CSD Communication|||
description: Related Article: Svyatoslav E. Tolstikov, Andrey E. Kolesnikov, Kristina A. Smirnova, Gleb A. Letyagin, Artem S. Bogomyakov, Galina V. Romanenko, Victor I. Ovcharenko|2025|New J.Chem.|49|7655|doi:10.1039/D5NJ00967G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mm1z9
title: CCDC 2431391: Experimental Crystal Structure Determination

description: Related Article: Daniel Omoding, Aparna Kushwaha, Gabriele Kociok-Köhn, Ahamad Imran, Abhinav Kumar|2025|New J.Chem.|49|7617|doi:10.1039/D5NJ01319D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kxp06
title: CCDC 2381048: Experimental Crystal Structure Determination

description: Related Article: Boheng Wan, Kairan Cui, Jie Xu, Shaohua Xing, Zimo Zhu, Yang Lai, Sheng Wu, Jiaxuan Guo, Yadong Chen, Tao Lu, Jie Feng, Yong Zhu|2025|New J.Chem.|49|7314|doi:10.1039/D5NJ00893J
description: Related Article: boheng wan|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.14942928
title: Ebullition dominates high methane emissions globally across all lake sizes

description: This is a dataset collected by Jonas Stage Sø for the paper "Ebullition dominates high methane emissions globally across all lake sizes". The dataset contains approximately 1000 observations of diffusive and ebullitive methane fluxes from around the world.
DOI: 10.5281/zenodo.14942929
title: Ebullition dominates high methane emissions globally across all lake sizes

description: This is a dataset collected by Jonas Stage Sø for the paper "Ebullition dominates high methane emissions globally across all lake sizes". The dataset contains approximately 1000 observations of diffusive and ebullitive methane fluxes from around the world.
DOI: 10.5281/zenodo.15348768
title: Ebullition dominates high methane emissions globally across all lake sizes

description: This is a dataset collected by Jonas Stage Sø for the paper "Ebullition dominates high methane emissions globally across all lake sizes". The dataset contains approximately 1000 observations of diffusive and ebullitive methane fluxes from around the world.
DOI: 10.60656/9ded625b7613407e
title: Custom collection of weather station data from Hyytiälä between 16 and 17 Feb 2024
DOI: 10.15468/dl.7mrjyf
title: Occurrence Download

description: A dataset containing 10709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Procambarus acutus (Girard, 1852), Faxonius limosus (Rafinesque, 1817), Pacifastacus leniusculus (Dana, 1852), Faxonius virilis (Hagen, 1870), Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Pontastacus leptodactylus (Eschscholtz, 1823))",
 "Country is one of (Belgium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 10709 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017649-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uqdn7
title: Occurrence Download

description: A dataset containing 1830401 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus L'Hér."
 ]
}

 The dataset includes 1830401 records from 1063 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017638-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/9l8ie3
title: x-harvey
title: Hurricane Harvey Floods

description: This dataset captures the impact of Hurricane Harvey, a Category 4 hurricane that caused catastrophic flooding in Texas and Louisiana in August 2017, resulting in over 100 fatalities. It focuses on affected areas of Houston, Texas, originally divided into east and west regions with 469 and 461 Sentinel-2 image tiles, respectively.
&lt;br&gt;
Each tile includes pre- and post-flood Sentinel-2 images, SAR coherence and intensity images, and building footprints marking damaged and undamaged structures before and after the disaster, provided at three spatial resolutions (1m, 2m, and 10m). Building footprints were sourced from OpenStreetMap, and flooded building labels were crowd-sourced via the MAXAR open data program.
&lt;br&gt;
In this version, the original train/test split has been adjusted to new train, validation, and test sets to reduce distribution shifts and improve model evaluation. The very high-resolution WorldView imagery (2262×1972 pixels at 1m resolution) has been excluded.
&lt;br&gt;
This dataset is used primarily for segmentation and change detection tasks related to flood impact assessment.
DOI: 10.21227/w7v2-2j58
title: "History of the Development of Communications,  Radio Control and Radio Direction Finding  in the Black Sea Fleet (1826\u20132002)"

description: "Based on information scattered in various sources, the article presents: the history of the development of the optical telegraph, the creation of the underwater telephone by Ye. V. Kolbasyev, the activities of A. S. Popov in the Black Sea Fleet (BSF), innovations in the development of communication technologies in the BSF in 1993\u20132002, as well as information on work in the field of radio control and radio direction finding in the BSF. The results of the study are presented in the compendium format, summarized in a table and illustrated with info graphics."
DOI: 10.34808/98a9-vq18
title: Electrochemical measurements of FLBP modifications using isocyanates

description: The electrochemical behavior of modified FLBP was investigated using a potentiostat-galvanostat (VMP-300, Bio-Logic, France) with EC-Lab software (v11.50). Measurements were carried out in a three-electrode configuration (Pt wire as the counter electrode, Ag/AgCl wire as a pseudo-reference electrode) under an inert atmosphere. 
 A 5 mM solution of the inner-sphere redox mediator [Fe(CN)₆]³⁻/⁴⁻ in 1 M KCl was used. This solution was prepared by mixing two salts: 2.5 mM K₃[Fe(CN)₆] and 2.5 mM K₄[Fe(CN)₆].
Cyclic voltammetry (CV) tests were conducted within a potential range of -0.25 V to +0.7 V (vs Ag/AgCl in 1 M KCl) at various scan rates: 5 mV s⁻¹, 10 mV s⁻¹, 25 mV s⁻¹, 50 mV s⁻¹, 100 mV s⁻¹, 150 mV s⁻¹, 200 mV s⁻¹, and 300 mV s⁻¹.
Electrochemical impedance spectroscopy (EIS) was performed by measuring the system’s electrical response at its open-circuit potential. The measurements covered a broad frequency range from 0.01 Hz to 100 kHz, with a sinusoidal amplitude of 10 mV.
DOI: 10.15468/dl.dbujkn
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gronops inaequalis",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010896-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gng7h
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gronops inaequalis",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010897-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16649939
title: lodubay/twoinfall: Galactic Chemical Evolution Model Outputs

description: Galactic chemical evolution model outputs for lodubay/twoinfall, a project investigating the two-infall scenario of chemical evolution in the context of large stellar age catalogs. The "multizone.tar.gz" file is a compressed archive of 11 multi-zone model outputs. See the repository on GitHub for usage details.
DOI: 10.15468/dl.5seaf9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Stumpffia pardus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081770-250717081556266/datasets/export for details.