cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17799696
title: Additional file 2 of Integrative analysis of CRISPR screening data uncovers new opportunities for optimizing cancer immunotherapy

description: Additional file 2: Table S1. Summary of included screens. Table S2. The occurrence frequency of sensitizer and resistor genes in different cancer types. Table S3. Summary of 65 sensitizer genes and 40 resistor genes. Table S4. GO functional annotation of sensitizer and resistor genes. Table S5. The list of immune-related features. Table S6. Summary of studies associated with ICB treatment. Table S7. Summary of Tumor immunity-related OGs/TSGs. Table S8. Summary of ICB enhancer genes and ICB suppressor genes. Table S9. Summary of positive regulators and negative regulators. Table S10. Prediction of potential immunomodulatory agents.
DOI: 10.6084/m9.figshare.17799696.v1
title: Additional file 2 of Integrative analysis of CRISPR screening data uncovers new opportunities for optimizing cancer immunotherapy

description: Additional file 2: Table S1. Summary of included screens. Table S2. The occurrence frequency of sensitizer and resistor genes in different cancer types. Table S3. Summary of 65 sensitizer genes and 40 resistor genes. Table S4. GO functional annotation of sensitizer and resistor genes. Table S5. The list of immune-related features. Table S6. Summary of studies associated with ICB treatment. Table S7. Summary of Tumor immunity-related OGs/TSGs. Table S8. Summary of ICB enhancer genes and ICB suppressor genes. Table S9. Summary of positive regulators and negative regulators. Table S10. Prediction of potential immunomodulatory agents.
DOI: 10.48597/hytu-dxyh
title: Measurement of Ammonium at Pålkem

description: Measurement of Ammonium at Pålkem
DOI: 10.48597/jkjt-vnh7
title: Measurement of Chloride at Pålkem

description: Measurement of Chloride at Pålkem
DOI: 10.48597/k7wb-fvth
title: Measurement of Ammonium at Pålkem

description: Measurement of Ammonium at Pålkem
DOI: 10.48597/ktvc-wb9p
title: Measurement of Precipitation_amount at Pålkem

description: Measurement of Precipitation_amount at Pålkem
DOI: 10.48597/m7pr-mua5
title: Measurement of Potassium at Pålkem

description: Measurement of Potassium at Pålkem
DOI: 10.6084/m9.figshare.17799713.v1
title: Additional file 4 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 4: Table S4. FPKMs of 47,095 mRNAs in cotton fibers under NI and WD.
DOI: 10.48597/mdnb-9xrt
title: Measurement of Ammonium at Pålkem

description: Measurement of Ammonium at Pålkem
DOI: 10.48597/mp7d-5pne
title: Measurement of pH at Pålkem

description: Measurement of pH at Pålkem
DOI: 10.48597/mshg-fyea
title: Measurement of pH at Pålkem

description: Measurement of pH at Pålkem
DOI: 10.6084/m9.figshare.25324966
title: 颞下颌关节上下腔注射富血小板血浆或透明质酸治疗颞下颌关节骨关节炎的疗效比较-- 实验原始数据 Original data of "Comparison of Temporomandibular Joint Osteoarthritis Treatment Efficacy of Platelet-rich Plasma and Hyaluronic Acid Injection in Upper or Lower TMJ Space".xlsx

description: The original data of the research "Comparison of Temporomandibular Joint Osteoarthritis Treatment Efficacy of Platelet-rich Plasma and Hyaluronic Acid Injection in Upper or Lower TMJ Space"Objective To compare the efficacy of temporomandibular joint (TMJ) osteoarthritis (OA) treatment efficacy of the platelet-rich plasma (PRP) and hyaluronic acid (HA) injection in upper or lower TMJ space. Methods A total of 60 TMJ-OA patients were randomly assigned to four groups: HA injection in upper TMJ space(n=20); HA injection in the lower-TMJ space (n=20); PRP injection in upper-TMJ space (n=10); PRP injection in lower-TMJ space (n=10). All patients were injected with HA or PRP 3 times at 2-week intervals of each injection. After the first injection, all participants received 750 mg of glucosamine hydrochloride, twice a day for 1.5 months, and wore a stabilization splint for 10 h a day for 2.5 months. The Helkimo Anamnestic index (Ai) and Clinical dysfunction index (Di) were used to evaluate clinical symptoms and condylar healing morphology was assessed by Cone beam Computer Tomography (CBCT) imaging. Results The Helkimo index significantly decreased in all groups at the 3-month follow-up compared to before the treatment. PRP injection in the lower-TMJ space exhibited better improvement in the Helkimo index compared with HA injection in the upper-TMJ space (P &lt; 0.05). PRP injection in the lower-TMJ space showed a better maximum active mouth opening (MMO) improvement than the HA injection in the lower-TMJ space (P &lt; 0.05). Regarding both the Helkimo index and MMO improvement, PRP or HA injection in lower space showed better results compared with PRP or HA injection in upper space. There were no statistically significant differences in TMJ subchondral bone parameters improvement scores among the groups. Conclusion In patients with TMJ-OA, injection of HA or PRP in the lower-TMJ space was more effective in alleviating clinical symptoms than injection into the upper-TMJ space. The combination of HA/PRP injection, glucosamine hydrochloride, and stabilization splint proved to be an effective combination therapy. Furthermore, PRP injection demonstrated slightly better results than HA in terms of clinical symptoms and MMO recovery. PRP injection could be a promising therapeutic approach for TMJ-OA.
DOI: 10.48597/na3g-q5zr
title: Measurement of Ammonium at Pålkem

description: Measurement of Ammonium at Pålkem
DOI: 10.48597/nfnk-c4tf
title: Measurement of pH at Pålkem

description: Measurement of pH at Pålkem
DOI: 10.48597/nneu-ct96
title: Measurement of Precipitation_amount at Pålkem

description: Measurement of Precipitation_amount at Pålkem
DOI: 10.48597/puvs-gvqt
title: Measurement of Sulphate_total at Pålkem

description: Measurement of Sulphate_total at Pålkem
DOI: 10.20387/bonares-afk9-4v58
title: Dataset of Nitrogen Fixation Related Traits of Cowpeas in Low Phosphorus Soils of Cameroon.

description: The use of morphological attributes have traditionally been used to establish phylogenetic relationships among genotypes between and within species and for various other purposes including identification of duplicates, studies of genetic variation patterns, and correlation of characteristics of agronomic importance. Therefore characterizing cowpea genotypes is an important step in conserving biodiversity and facilitating breeding. A pot experiment was used to characterize 50 cowpea (Vigna unguiculata  ) genotypes in the screen house at Nkolbisson IITA, Cameroon. These genotypes were collected in 2012 from various sources: the International Institute of Tropical Agriculture (IITA), Senegalese Agricultural Research Institute (ISRA), University of California, Riverside (UCR); and one genotype evaluated previously at the study site (Danilla) in Cameroon. Soil samples were analyzed for pH, organic C, N, exchangeable Ca, Mg, K, and extractable P. Data was collected for 20 morphological traits related to grain yields, nitrogen fixation and plant growth.

Research domain: Plant Breeding

Research question: How related are the cowpeas grown in Cameroon based on amount of nitrogen fixed and grain yield?.
DOI: 10.48597/q3qp-2ngq
title: Measurement of Ammonium at Pålkem

description: Measurement of Ammonium at Pålkem
DOI: 10.48597/qf6a-qr7u
title: Measurement of Potassium at Pålkem

description: Measurement of Potassium at Pålkem
DOI: 10.6084/m9.figshare.17799713
title: Additional file 4 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 4: Table S4. FPKMs of 47,095 mRNAs in cotton fibers under NI and WD.
DOI: 10.6084/m9.figshare.17799716
title: Additional file 5 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 5: Table S5. FPKMs of 13,051 lncRNAs in cotton fibers under NI and WD.
DOI: 10.48597/qm98-fgyy
title: Measurement of Chloride at Pålkem

description: Measurement of Chloride at Pålkem
DOI: 10.48597/qnpr-32zb
title: Measurement of Nitrate at Pålkem

description: Measurement of Nitrate at Pålkem
DOI: 10.48597/qq35-wfdj
title: Measurement of Nitrate at Pålkem

description: Measurement of Nitrate at Pålkem
DOI: 10.6084/m9.figshare.17799716.v1
title: Additional file 5 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 5: Table S5. FPKMs of 13,051 lncRNAs in cotton fibers under NI and WD.
DOI: 10.48597/qqm7-p6f9
title: Measurement of Potassium at Pålkem

description: Measurement of Potassium at Pålkem
DOI: 10.48597/qunf-xuw7
title: Measurement of Sodium at Pålkem

description: Measurement of Sodium at Pålkem
DOI: 10.48597/r37a-77jx
title: Measurement of Sulphate_total at Pålkem

description: Measurement of Sulphate_total at Pålkem
DOI: 10.48597/r3s3-zat7
title: Measurement of Nitrate at Pålkem

description: Measurement of Nitrate at Pålkem
DOI: 10.6084/m9.figshare.17799722
title: Additional file 6 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 6: Table S6. List of DEGs in cotton fibers between NI and WD.
DOI: 10.6084/m9.figshare.17799722.v1
title: Additional file 6 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 6: Table S6. List of DEGs in cotton fibers between NI and WD.
DOI: 10.6084/m9.figshare.17799731
title: Additional file 8 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 8: Table S8. List of DEGs potentially regulated by DERs.
DOI: 10.6084/m9.figshare.25325275
title: FusNet: an advanced fusion neural network for predicting diverse protein-mediated loops exclusively from genomic DNA sequences

description: The three-dimensional (3D) organization of the genome is intricately structured, necessitating an array of proteins to guarantee the accurate formation and oversight of chromatin loops, along with more advanced structures. Investigating protein-mediated loop provides insights into the sophisticated interactions among these loops and their pivotal roles in gene expression modulation across distinct cellular environments. However, current targeted chromatin conformation capture assays encounter constraints in identifying protein-mediated loops. Additionally, prevailing computational methods not only fall short in predicting the diverse spectrum of protein-mediated loops but also necessitate extensive epigenomic datasets, further complicating their applicability. To mitigate these challenges, we present an advanced fusion neural network, FusNet, designed for the precise prediction of anchors and subsequent loop formations, solely requiring simple genomic DNA sequences as input. To systematically extract salient features associated with sequence interactions, we meticulously apply convolutional and transformer operations on the FusNet model. To enhance the accuracy and generalization capacity of FusNet, we built a fusion layer by stacking the prediction of fundamental models with a meta-model. FusNet demonstrated its effectiveness in predicting protein-mediated loops, exhibiting high consistency with Hi-C data. Moreover, we found that the loops output from FusNet are highly associated with regulatory functions. Through association analysis with genetic risk variants, FusNet further revealed its potential for unraveling disease-related mechanisms. In conclusion, our study offers a novel computational approach for predicting various protein-mediated chromatin loops, which could substantially enhance research on the functional significance of chromatin loop structures across diverse cellular contexts.
DOI: 10.6084/m9.figshare.25325275.v1
title: FusNet: an advanced fusion neural network for predicting diverse protein-mediated loops exclusively from genomic DNA sequences

description: The three-dimensional (3D) organization of the genome is intricately structured, necessitating an array of proteins to guarantee the accurate formation and oversight of chromatin loops, along with more advanced structures. Investigating protein-mediated loop provides insights into the sophisticated interactions among these loops and their pivotal roles in gene expression modulation across distinct cellular environments. However, current targeted chromatin conformation capture assays encounter constraints in identifying protein-mediated loops. Additionally, prevailing computational methods not only fall short in predicting the diverse spectrum of protein-mediated loops but also necessitate extensive epigenomic datasets, further complicating their applicability. To mitigate these challenges, we present an advanced fusion neural network, FusNet, designed for the precise prediction of anchors and subsequent loop formations, solely requiring simple genomic DNA sequences as input. To systematically extract salient features associated with sequence interactions, we meticulously apply convolutional and transformer operations on the FusNet model. To enhance the accuracy and generalization capacity of FusNet, we built a fusion layer by stacking the prediction of fundamental models with a meta-model. FusNet demonstrated its effectiveness in predicting protein-mediated loops, exhibiting high consistency with Hi-C data. Moreover, we found that the loops output from FusNet are highly associated with regulatory functions. Through association analysis with genetic risk variants, FusNet further revealed its potential for unraveling disease-related mechanisms. In conclusion, our study offers a novel computational approach for predicting various protein-mediated chromatin loops, which could substantially enhance research on the functional significance of chromatin loop structures across diverse cellular contexts.
DOI: 10.6084/m9.figshare.17799731.v1
title: Additional file 8 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 8: Table S8. List of DEGs potentially regulated by DERs.
DOI: 10.6084/m9.figshare.17799734
title: Additional file 9 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 9: Table S9. GO enrichment analysis of DEGs-R.
DOI: 10.6084/m9.figshare.17799735
title: Additional file 1 of Prevotellaceae produces butyrate to alleviate PD-1/PD-L1 inhibitor-related cardiotoxicity via PPARα-CYP4X1 axis in colonic macrophages

description: Additional file 1.
DOI: 10.6084/m9.figshare.17799725.v1
title: Additional file 7 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 7: Table S7. List of DERs in cotton fibers between NI and WD.
DOI: 10.6084/m9.figshare.17799725
title: Additional file 7 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 7: Table S7. List of DERs in cotton fibers between NI and WD.
DOI: 10.6084/m9.figshare.17799734.v1
title: Additional file 9 of Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum

description: Additional file 9: Table S9. GO enrichment analysis of DEGs-R.
DOI: 10.6084/m9.figshare.11508288
title: Petrogenesis and tectonic significance of the Fenshuiling and Mengha granitic plutons, SW China: insights from bulk elements, zircon U-Pb ages and Sr-Nd-Hf isotopes

description: The Ailaoshan shear zone developed plenty of Cenozoic granitic plutons, located between the Yangtze block in the east and the Simao block in the west. Although a mass of previous studies have enriched the understanding of petrogenesis of these plutons, there are few reports on the plutons within the Mojiang-Lvchun terrane, a suspect domain between the Yangtze and Simao blocks. Among two plutons investigated in this paper, the Fenshuiling pluton is characterized by strongly shoshonitic (K<sub>2</sub>0 = 5.8–6.4 wt.%) nature, high Y (6.5–30.0 ppm) and Yb (0.88–2.97 ppm) contents, and has limited variations in La/Yb (8.6–20.5) and Dy/Yb (1.6–1.9) with increasing SiO<sub>2</sub>. In Mengha, the pluton is also strongly shoshonitic (K<sub>2</sub>0 = 5.7–6.1 wt.%), high Y (18.7–32.3 ppm) and Yb (2.03–3.50 ppm) contents, and shares limited variations in La/Yb (17.0–17.6) and Dy/Yb (1.5–1.7) with increasing SiO<sub>2</sub>. These tendencies correspond with the differentiation from a shoshonitic mafic melt by olivine, clinopyroxene and plagioclase (gabbroic) dominated fractional crystallization. These plutons mainly composed of quartz syenites are characterized by island-arc basalt (IAB) patterns, which are consistent with those evolved by shoshonitic mafic melt derived from metasomatic lithospheric mantle within the Yangtze block. Zircon ε<sub>Hf</sub>(t) values of Fenshuiling and Mengha plutons range from −4.1 to −0.7 and −2.8 to −1.1, respectively, and their whole-rock ε<sub>Nd</sub>(t) values are −5.0 to −4.6 and −4.7 to −4.6, respectively. These Hf isotopes are similar to those from Neoproterozoic granitoids caused by a persistent Neoproterozoic subduction around the southwestern margin of the Yangtze block. This similarity supports a scenario that the enriched lithospheric mantle source area of these plutons caused by the Neoproterozoic subduction, also means that the suspect terrane belongs to the Yangtze block. The location of the Fenshuiling and Mengha plutons separated from those within the western margin of the Yangtze block is attributed to Cenozoic sinistral shearing events.
DOI: 10.21994/loar48867
title: aeroeavis Batch 400027105597

description: aeroeavis. Batch 400027105597. Roundtrip 1. 1882-01-01/1894-12-31. Pages: 6600.
DOI: 10.6084/m9.figshare.11508288.v1
title: Petrogenesis and tectonic significance of the Fenshuiling and Mengha granitic plutons, SW China: insights from bulk elements, zircon U-Pb ages and Sr-Nd-Hf isotopes

description: The Ailaoshan shear zone developed plenty of Cenozoic granitic plutons, located between the Yangtze block in the east and the Simao block in the west. Although a mass of previous studies have enriched the understanding of petrogenesis of these plutons, there are few reports on the plutons within the Mojiang-Lvchun terrane, a suspect domain between the Yangtze and Simao blocks. Among two plutons investigated in this paper, the Fenshuiling pluton is characterized by strongly shoshonitic (K<sub>2</sub>0 = 5.8–6.4 wt.%) nature, high Y (6.5–30.0 ppm) and Yb (0.88–2.97 ppm) contents, and has limited variations in La/Yb (8.6–20.5) and Dy/Yb (1.6–1.9) with increasing SiO<sub>2</sub>. In Mengha, the pluton is also strongly shoshonitic (K<sub>2</sub>0 = 5.7–6.1 wt.%), high Y (18.7–32.3 ppm) and Yb (2.03–3.50 ppm) contents, and shares limited variations in La/Yb (17.0–17.6) and Dy/Yb (1.5–1.7) with increasing SiO<sub>2</sub>. These tendencies correspond with the differentiation from a shoshonitic mafic melt by olivine, clinopyroxene and plagioclase (gabbroic) dominated fractional crystallization. These plutons mainly composed of quartz syenites are characterized by island-arc basalt (IAB) patterns, which are consistent with those evolved by shoshonitic mafic melt derived from metasomatic lithospheric mantle within the Yangtze block. Zircon ε<sub>Hf</sub>(t) values of Fenshuiling and Mengha plutons range from −4.1 to −0.7 and −2.8 to −1.1, respectively, and their whole-rock ε<sub>Nd</sub>(t) values are −5.0 to −4.6 and −4.7 to −4.6, respectively. These Hf isotopes are similar to those from Neoproterozoic granitoids caused by a persistent Neoproterozoic subduction around the southwestern margin of the Yangtze block. This similarity supports a scenario that the enriched lithospheric mantle source area of these plutons caused by the Neoproterozoic subduction, also means that the suspect terrane belongs to the Yangtze block. The location of the Fenshuiling and Mengha plutons separated from those within the western margin of the Yangtze block is attributed to Cenozoic sinistral shearing events.
DOI: 10.34740/kaggle/dsv/7736949
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.13605340
title: Additional file 8 of Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates

description: Additional file 8: Table S5. GO enrichment analysis the differentially expressed genes between NM and AM.
DOI: 10.5281/zenodo.10561847
title: TPRoGI: a comprehensive rock glacier inventory for the Tibetan Plateau using deep learning

description: An inventory of 44,273 rock glaciers, covering approximately 6,000 km2, across the Tibetan Plateau, was compiled using remote sensing and DeepLabv3+, a kind of deep learning model. The file in the format of a shapefile contains the boundary of each rock glacier as vectors in the Coordinate Reference System of EPSG:4326-WGS 84. The associated attribute table includes rock glacier ID, source data, date of mapping, mapper’s name, reviewer’s name, additional information, latitude (units: degrees), longitude (units: degrees), subregion of rock glacier, rock glacier area (units: m2), mean elevation of rock glacier (units: m), median elevation of rock glacier (units: m), minimum elevation of rock glacier (units: m), maximum elevation of rock glacier (units: m), mean slope of rock glacier (units: degrees), median slope of rock glacier (units: degrees), minimum slope of rock glacier (units: degrees), maximum slope of rock glacier (units: degrees), aspect of rock glacier (units: degrees), mean annual air temperature (units: °C), mean annual ground temperature (units: °C), annual precipitation (units:  mm), annual potential incoming solar radiation (units:  kWh/m2). The corresponding names for the table fields are ‘ID’, ‘SOUR_DATA’, ‘MAP_DATE’, ‘MAPPER’, ‘REVIEWER’, ‘ADDI_INF’, ‘LAT’, ‘LON’, ‘SUBREGION’, ‘AREA’, ‘ELE_MEAN’, ‘ELE_MEDIAN’, ‘ELE_MIN’, ‘ELE_MAX’, ‘SLO_MEAN’, ‘SLO_MEDIAN’, ‘SLO_MIN’, ‘SLO_MAX’, ‘ASPECT’, ‘MAAT’, ‘MAGT’, ‘AP’, ‘PISR’.
DOI: 10.6084/m9.figshare.13605343
title: Additional file 9 of Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates

description: Additional file 9: Table S6. KEGG pathway analysis the differentially expressed genes between NM and AM.
DOI: 10.6084/m9.figshare.7314005
title: Additional file 10: of The initial deficiency of protein processing and flavonoids biosynthesis were the main mechanisms for the male sterility induced by SX-1 in Brassica napus

description: DE-miRNA/mRNA modules of inversely and positively related. Inf indicate the miRNA only detected in CHA treated materials, #NAME? indicate the miRNA only detected in control. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7314023.v1
title: Additional file 11: of The initial deficiency of protein processing and flavonoids biosynthesis were the main mechanisms for the male sterility induced by SX-1 in Brassica napus

description: The Log 2 ratio (CHA/control) of all the correlated DEGs and DEPs. r_SA, r_MA and r_LA result from RNA-seq at SA, MA and LA stage respectively. p_SA, p_MA and p_LA result from proteomic analysis respectively. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7314005.v1
title: Additional file 10: of The initial deficiency of protein processing and flavonoids biosynthesis were the main mechanisms for the male sterility induced by SX-1 in Brassica napus

description: DE-miRNA/mRNA modules of inversely and positively related. Inf indicate the miRNA only detected in CHA treated materials, #NAME? indicate the miRNA only detected in control. (XLSX 15 kb)