cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nc8ufk
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nasturtium fontanum (Lam.) Asch."
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042901-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vmtxp
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptocharias smithii (Müller & Henle, 1839)"
 ]
}

 The dataset includes 729 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029695-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qgn3h
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nasturtium aquaticum T.M.Bock"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042902-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwyk2v
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-92.26018 16.93765,-85.48346 16.93765,-85.48346 22.58355,-92.26018 22.58355,-92.26018 16.93765))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cedrela odorata L."
 ]
}

 The dataset includes 338 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070575-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10934020
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RC

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from mice that were housed in a regular cage (RC). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

Refer to the original publication for additional information. The sex of individual mice is as follows:




Group
Mouse #
Sex


RC
M1
M


 
M2
M


 
M3
M


 
M4
F


 
M5
F
DOI: 10.5281/zenodo.10934021
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RC

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from mice that were housed in a regular cage (RC). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

Refer to the original publication for additional information. The sex of individual mice is as follows:




Group
Mouse #
Sex


RC
M1
M


 
M2
M


 
M3
M


 
M4
F


 
M5
F
DOI: 10.15468/dl.gmz3rt
title: Occurrence Download

description: A dataset containing 1874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptophis ahaetulla (Linnaeus, 1758)"
 ]
}

 The dataset includes 1874 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029702-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10934075
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RetroAAV-EE

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from retro-AAV injected mice that were housed in an enriched environment (EE). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice in this dataset were male. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.15468/dl.m5h938
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Farsetia triquetra DC."
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042914-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10934074
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RetroAAV-EE

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from retro-AAV injected mice that were housed in an enriched environment (EE). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice in this dataset were male. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.15468/dl.rces6d
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Geometry POLYGON((-74.10888 4.62398,-74.07069 4.62398,-74.07069 4.67382,-74.10888 4.67382,-74.10888 4.62398))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strigiformes"
 ]
}

 The dataset includes 121 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070597-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qabttv
title: Occurrence Download

description: A dataset containing 703 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinobatos irvinei Norman, 1931"
 ]
}

 The dataset includes 703 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029697-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10934107
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RetroAAV-RC

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from retro-AAV injected mice that were housed in a regular cage (RC). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice were male. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.5281/zenodo.10934108
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - RetroAAV-RC

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from retro-AAV injected mice that were housed in a regular cage (RC). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice were male. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.15468/dl.6t7cha
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eviota mimica Greenfield & Randall, 2016"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070381-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uzmyj
title: Occurrence Download

description: A dataset containing 373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pterygoplichthys disjunctivus (Weber, 1991)"
 ]
}

 The dataset includes 373 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122227-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10933614
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - Irr+EE

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from mice that were irradiated to ablate adult neurogenesis and housed in an enriched environment (Irr+EE). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice were female. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.5281/zenodo.10933615
title: Adult neurogenesis improves spatial information encoding in the mouse hippocampus - Irr+EE

description: In vivo two-photon imaging dataset for Frechou et al. "Adult neurogenesis improves spatial information encoding in the mouse hippocampus"

This dataset includes data from mice that were irradiated to ablate adult neurogenesis and housed in an enriched environment (Irr+EE). 

For each recording we included raw imaging data consisting of:



Individual frames (.tif files) from 3 consecutive 3 min Ca2+ imaging movies (which were concatenated for analysis)

Microscope settings metadata (Experiment.xml)

Mouse location data (Episode001.h5 in SyncData folder) containing rotary encoder and RFID data


Some analyzed data is also included:



Suite2p analysis data (Suite2p folder)

fluorescence.npy contains raw fluorescence data (the F output of Suite2p data extraction). Rows are individual cells and columns are frames (i.e. timepoints) acquired at 15.253 Hz.

positions.npy contains the position of the mouse on the treadmill belt indexed from 0 to 100.


Both NumPy(.npy) files are the output of the Preprocessing.py code, part of the analysis pipeline used for data analysis in the original publication, which can be found at https://github.com/GoncalvesLab/Frechou-et-al-Neurogenesis

All imaged mice were female. Refer to the original publication for additional information. 
description: ACKNOWLEDGEMENTS

We thank Dr. Jake Jordan, Roland Ferger, Elizabeth Wood, Dr. Maria Gulinello, Kevin Fisher, Dr. Mimi Kim and Dr. Sacha Sokoloski for technical advice, assistance and discussions. M.A.F. was supported by a Fulbright Scholarship. M.A.F. and K.D.M. were funded by The Einstein Training Program in Stem Cell Research from the Empire State Stem Cell Fund through New York State Department of Health Contract C34874GG. J.T.G. was supported by the Whitehall Foundation (Research Grant 2019-05-71) and the National Institutes of Health (NINDS R01NS125252-01A1). R.C.C. was supported by the National Institutes of Health (NEI R01EY030578, NIDA RF1DA056400). Confocal microscopy experiments were supported by a  shared instrumentation grant (1S10OD025295-01A1). This article is dedicated to the memory of Dr. Paul S. Frenette (1965-2021) who provided invaluable encouragement and support for this project.
DOI: 10.15468/dl.q63dv8
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchobatus luebberti Ehrenbaum, 1915"
 ]
}

 The dataset includes 462 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029704-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.