cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25827/mtpv-kg27
title:   UNM-OCH Diabetes Project Data Set

description: Background

Latinos who live in poverty are at high risk for type 2 diabetes (diabetes). Health guidelines recommend strategies for self-management, but many people find lifestyle change to be challenging. Systematic reviews show that culturally competent self-management programs that take values, customs, beliefs, and language from Latino culture into account can significantly improve diabetes outcomes.

Objectives

We compared the effectiveness of two distinct evidence-based models of culturally competent diabetes health promotion: 1) The Diabetes Self-Management Support Empowerment Model (DSMS), an approach using a classroom-based educational sessions taught by trained diabetes educators, and 2) The Chronic Care Model (CCM), a holistic community-based program for treating chronic disease that includes wrap-around services and incorporation of patients’ needs. Although they are both described as “culturally competent,” they differ strongly in the extent to which they embody characteristics of cultural and contextual situatedness. Aim #1. Measure and compare improvement in patient capacity for diabetes self-management. Aim #2. Measure and compare patient success at diabetes self-management. Aim #3. Characterize the ways that two distinct culturally competent diabetes self-management programs interface with patient culture and socioeconomic context.
DOI: 10.3886/0h70-k674
title: Zambia Compact - Innovation Grant Facility: Interim Analysis Report
DOI: 10.3886/3qfy-pt58
title: Zambia Compact - Innovation Grant Facility: Interim Analysis Report
DOI: 10.6073/pasta/09da62be27226a3e5a838a802989fee2
title: SIC01 Isotopic composition of select archived soil cores from Konza Prairie

description: The concentration and isotopic composition of soil carbon and nitrogen were measured from select archived soil cores originally collected for the NSC01 dataset using an isotope ratio mass spectrometer coupled with an elemental analyzer. These soil cores were collected from the lowlands (25 cm depth) of four experimental watersheds in 1982, 1987, 2002, 2010, and 2015. The four experimental watersheds are 001d, n01b, 020b, and n20b.
DOI: 10.5519/qd.zr20ryx3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (12 records)
DOI: 10.6073/pasta/ebfbd66588a1d930aa14e72121536a2c
title: SLP01 Leaf physiology in response to fire and climate within Cornus drummondii shrubs at Konza prairie

description: Woody encroachment threatens the loss of remaining grasslands. Clonal shrubs are of particular concern because of their ability to resprout after disturbance, spread vegetatively, and share resources among interconnected stems. These traits contribute to the encroachment of deep-rooted clonal shrubs in tallgrass prairie. In this study, we investigated how leaf physiological traits differ among interconnected stems within a dominant encroaching shrub in tallgrass prairie, Cornus drummondii. Accounting for intra-clonal differences among stems in response to disturbance may be useful to more accurately parameterize models that predict the effects of shrub encroachment on ecosystem processes. Gas exchange rates, water potential, carbon isotopes, and leaf traits were collected from the periphery to the center of discrete C. drummondii shrubs. Measurements took place in the summers of 2015 and 2018
DOI: 10.6073/pasta/82a776a2043fce050a8fdb03659311a7
title: SMB01 Variation in soil respiration and bacterial community due to species-specific plant-soil history at konza prairie

description: We conducted a “home vs. away” plant-soil feedback greenhouse experiment using two C3 grass species (Bromus inermis and Pascopyrum smithii) grown in soil collected from Konza Prairie. We used a closed-circuit CO2 trapping method and isotopic analysis to differentiate between root-derived and SOM-derived CO2 production. We investigated how soil chemistry and soil bacterial communities differed in soils with a history of B. inermis vs soils with a history of P. smithii.
DOI: 10.6073/pasta/cf92f89c19567df6ed35c2b7455abea5
title: SMP01 Spatial variation of soil microbial processes under Cornus drummondii shrubs of varying size at Konza Prairie, 2017

description: Soil was collected from multiple locations under individual Cornus drummondii shrub islands of varying size to measure within-shrub heterogeneity in soil microbial processes. Soil chemistry (Total C, Total N, extractable inorganic N, extractable P, and organic matter cotent), microbial biomass C and N, and potential extracellular enzymatic activity of β-glucosidase, phosphatase, NAG-ase, and LAP-ase were measured. Potential carbon mineralization and the isotopic composition of respired soil carbon was measured over a 77-day laboratory incubation.
DOI: 10.6073/pasta/c8536d96c1bd340c766f8c42a98e6b40
title: WER01 Elevated CO2 counteracts effects of water stress on woody rangeland-encroaching species at Konza Prairie

description: Woody plants are increasing prevalence and dominance in many rangelands around the world. The reason for their increase is various but two common drivers that have changed are an increase in CO2 concentrations and alteration to precipitation dynamics. We asked what the physiological growth dynamics of four juvenile woody plant species (Cornus drummondii, Rhus glabra, Gleditsia triacanthos and Juniperus osteosperma) when grown in elevated CO2 and chronically water stressed. We found that elevated CO2 counteracts much of the physiological effects of chronic water stress in the four different woody plant species measured. The alleviation of water stress from increased CO2 concentrations will result in juvenile woody plants continuing to expand and establish in North American rangelands. This information will aid land managers in making long-term management objectives for reducing woody plants in rangelands.
DOI: 10.6073/pasta/a014bd026faa90da9bd5149a39641dc2
title: WRV01 Riparian woody removal vegetation survey on watershed N2B at Konza Prairie

description: Woody riparian vegetation was cut in watershed N2B in winter 2010 for 30 m on each side of the stream channel. These vegetation surveys are from before and after removal. The treatments are naturally open (grassland), woody riparian removed, and re-planted after woody riparian removed.
DOI: 10.5517/ccdc.csd.cc286fnl
title: CCDC 2091559: Experimental Crystal Structure Determination

description: Related Article: Zhilin Hou, Lizbeth Lockwood, Di Zhang, Christopher J. Occhiuto, Linqing Mo, Kelly E. Aldrich, Hayden E. Stoub, Kathleen A. Gallo, Karen T. Liby, Aaron L. Odom|2022|RSC Med. Chem.|14|74|doi:10.1039/D2MD00211F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28rtxs
title: CCDC 2108276: Experimental Crystal Structure Determination

description: Related Article: Zhen Wang, Xiaoxiao Cui, Antonino Famulari, Javier Martí-Rujas, Benson M. Kariuki, Fang Guo|2022|CrystEngComm|24|7924|doi:10.1039/D2CE01174C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tlnc
title: CCDC 2109973: Experimental Crystal Structure Determination

description: Related Article: Zhen Wang, Xiaoxiao Cui, Antonino Famulari, Javier Martí-Rujas, Benson M. Kariuki, Fang Guo|2022|CrystEngComm|24|7924|doi:10.1039/D2CE01174C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4g9b
title: CCDC 2208821: Experimental Crystal Structure Determination

description: Related Article: Mahesh Kumar, Ramesh Kumar Vishwakarma, Preeti, Krishna Nand Singh|2023|New J.Chem.|47|2412|doi:10.1039/D2NJ05285G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4kpt
title: CCDC 2208926: Experimental Crystal Structure Determination

description: Related Article: Vladimir V. Parakhin, Galina V. Pokhvisneva, Tatyana V. Ternikova, Nina I. Shlykova, Aida I. Samigullina, Sergei V. Nikitin, Pavel B. Gordeev, Gennady A. Smirnov, Tatyana S. Kon’kova, David B. Lempert, Alla N. Pivkina|2023|New J.Chem.|47|2444|doi:10.1039/D2NJ05332B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4kqv
title: CCDC 2208927: Experimental Crystal Structure Determination

description: Related Article: Vladimir V. Parakhin, Galina V. Pokhvisneva, Tatyana V. Ternikova, Nina I. Shlykova, Aida I. Samigullina, Sergei V. Nikitin, Pavel B. Gordeev, Gennady A. Smirnov, Tatyana S. Kon’kova, David B. Lempert, Alla N. Pivkina|2023|New J.Chem.|47|2444|doi:10.1039/D2NJ05332B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4krw
title: CCDC 2208928: Experimental Crystal Structure Determination

description: Related Article: Vladimir V. Parakhin, Galina V. Pokhvisneva, Tatyana V. Ternikova, Nina I. Shlykova, Aida I. Samigullina, Sergei V. Nikitin, Pavel B. Gordeev, Gennady A. Smirnov, Tatyana S. Kon’kova, David B. Lempert, Alla N. Pivkina|2023|New J.Chem.|47|2444|doi:10.1039/D2NJ05332B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4kty
title: CCDC 2208930: Experimental Crystal Structure Determination

description: Related Article: Vladimir V. Parakhin, Galina V. Pokhvisneva, Tatyana V. Ternikova, Nina I. Shlykova, Aida I. Samigullina, Sergei V. Nikitin, Pavel B. Gordeev, Gennady A. Smirnov, Tatyana S. Kon’kova, David B. Lempert, Alla N. Pivkina|2023|New J.Chem.|47|2444|doi:10.1039/D2NJ05332B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4kvz
title: CCDC 2208931: Experimental Crystal Structure Determination

description: Related Article: Vladimir V. Parakhin, Galina V. Pokhvisneva, Tatyana V. Ternikova, Nina I. Shlykova, Aida I. Samigullina, Sergei V. Nikitin, Pavel B. Gordeev, Gennady A. Smirnov, Tatyana S. Kon’kova, David B. Lempert, Alla N. Pivkina|2023|New J.Chem.|47|2444|doi:10.1039/D2NJ05332B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p9rsievf
title: Textural occurrence and organic porosity of solid bitumen in shales

description: This study presents Raman spectroscopic data paired with scanning electron microscopy (SEM) to assess solid bitumen composition and porosity development as a function of solid bitumen texture and association with minerals. A series of hydrous pyrolysis experiments (1-103 days, 300-370&amp;deg;C) using a low maturity (0.25% solid bitumen reflectance, BRo), high total organic carbon [(TOC), 14.0 wt. %] New Albany Shale sample as the starting material yielded pyrolysis residues designed to evaluate the evolution of TOC, solid bitumen aromaticity, and organic porosity development with increasing temperature and heating duration. Solid bitumen was analyzed by Raman spectroscopy wherein point data was collected from accumulations that ranged in size, pore density, and degree of association with the mineral matrix. Raman spectroscopy results show that with increasing temperature and experimental duration, solid bitumen aromaticity increases and compositional variability decreases. With regards to texture and composition, coarser-grained solid bitumen (&amp;gt;1.3 &amp;micro;m from nearest mineral grain) tends to have fewer pores (as identified with SEM) and consistently higher, but less variable aromaticity than thinner, wispy solid bitumen which is more intimately associated with the mineral matrix. The Raman data indicate that solid bitumen porosity development and molecular composition are linked, and these parameters are related to the textural relationships of the organic matter within the whole rock.
DOI: 10.5066/p9fcjjny
title: Strain induced molecular heterogeneity in ancient sedimentary organic matter mapped at nanoscales using optical photothermal infrared spectroscopy

description: Here we report ultra-high resolution infrared mapping of organic matter functional group distribution in Tasmanites (algal microfossils) from the Upper Devonian Ohio Shale using optical photothermal infrared spectroscopy (O-PTIR). O-PTIR is capable of rapidly measuring the vibrational response of samples in situ with ~500-nm spatial resolution, well below the infrared diffraction limit. Our results indicate that organic matter within the fold apices regions (zones of greatest deformation) of relatively large Tasmanites is more aliphatic and less oxygen-rich than organic matter in the surrounding Tasmanites body. This contrasts with data from relatively thinner Tasmanites which show statistically invariant chemical differences between the fold apices and body regions. These findings indicate that deformation strain due to mechanical stress during burial can alter the molecular structure of sedimentary organic matter to different degrees across nanometer to micron length scales leading to chemical heterogeneity. However, chemical differences induced to organic matter by this mechanism appear be minor compared to those from thermal alteration. Finally, the data presented here represent the first application of O-PTIR to study sedimentary organic matter highlighting the great promise this analytical approach has for future studies evaluating the molecular composition of geologic materials.
DOI: 10.25378/janelia.21171373
title: EASI-FISH reveals spatial and axonal projection patterns of molecularly defined cell types in the central amygdala (CEA)

description: We combined Expansion-Assisted Iterative Fluorescence in situ hybridization (EASI-FISH) with retrograde tracer labeling to reveal the spatial and axonal projection patterns of molecularly defined neuronal types in the central amygdala (CEA). <br> Here, 29 marker-genes were measured with EASI-FISH in 100µm thick brain slices in the mouse CEA, after retrograde tracer labeling in 5 downstream brain targets: the bed nucleus of the stria terminalis (BNST), lateral substantia nigra (lateral SN), periaqueductal gray (PAG), parabrachial nucleus (PBN), and parvocellular reticular formation (PCRt). <br> '<strong>CEA_mFISH_data.csv</strong>' contains spot count for all marker genes, axonal projections, spatial locations (z, y, x) and cell body size (area) and shape (solidity), and cell_cluster for each neuron. Each row represents measurement from one neuron. Data collected in six samples from two animals are included here. <br>
DOI: 10.25378/janelia.21171373.v1
title: EASI-FISH reveals spatial and axonal projection patterns of molecularly defined cell types in the central amygdala (CEA)

description: We combined Expansion-Assisted Iterative Fluorescence in situ hybridization (EASI-FISH) with retrograde tracer labeling to reveal the spatial and axonal projection patterns of molecularly defined neuronal types in the central amygdala (CEA). <br> Here, 29 marker-genes were measured with EASI-FISH in 100µm thick brain slices in the mouse CEA, after retrograde tracer labeling in 5 downstream brain targets: the bed nucleus of the stria terminalis (BNST), lateral substantia nigra (lateral SN), periaqueductal gray (PAG), parabrachial nucleus (PBN), and parvocellular reticular formation (PCRt). <br> '<strong>CEA_mFISH_data.csv</strong>' contains spot count for all marker genes, axonal projections, spatial locations (z, y, x) and cell body size (area) and shape (solidity), and cell_cluster for each neuron. Each row represents measurement from one neuron. Data collected in six samples from two animals are included here. <br>
DOI: 10.5281/zenodo.7587404
title: Informing upper extremity rehabilitation through endpoint kinematics of the functional reaching movement after stroke

description: Background. Stroke is a leading contributor to upper limb disability. Current assessments of motor ability are at best subjective estimates. Rehabilitation could be more effective when informed by an individual's specific capacities rather than diagnostic observation. This study characterizes sub-movements of interest during functional reach-to-target tasks with endpoint analysis.\newline<br> <br> Methods. Using Fugl-Meyer (FM) scores and reach capacities, stroke survivors were placed in either mild or severe impairment groups. Individual completed sets of reach-to-target tasks over two visits. The averaged reach curve for each subject was analyzed for angular orientation and velocity profile. The Procrustes method of statistical shape analysis was modified to identify reaching sub-movements that were incongruous to control sub-movements.\newline Findings. Reach-to-target curves were investigated for 15 individuals with mild impairment (FM \(52 \pm 9\)) and 14 individuals with severe impairment (FM \(16 \pm 7\)). The endpoint kinematic analysis found that individuals with severe impairment demonstrate lower peak velocities (centimeters per second) [\(28.5 \pm 17.3 , 80.3 \pm 29.5\)] which occurred sooner in the movement (milliseconds) [\(36.81 \pm 27.0, 59.6 \pm 14.8\)]. The mild group demonstrated variability in orientation in the medial-lateral space, and movement initiation that was congruous to healthy movement. The severe impairment group demonstrated variability in orientation in every axis and showed incongruous initiation and completion behaviors, with some comparable movement in between. \newline<br> <br> Interpretation. Endpoint analysis is a valuable option for clinicians to inform physiotherapy. In addition to kinematic metrics such as orientation and velocity, sub-movements that are comparable to healthy movement can be identified in both mild and severe impairment.
DOI: 10.5281/zenodo.7587403
title: Informing upper extremity rehabilitation through endpoint kinematics of the functional reaching movement after stroke

description: Background. Stroke is a leading contributor to upper limb disability. Current assessments of motor ability are at best subjective estimates. Rehabilitation could be more effective when informed by an individual's specific capacities rather than diagnostic observation. This study characterizes sub-movements of interest during functional reach-to-target tasks with endpoint analysis.\newline<br> <br> Methods. Using Fugl-Meyer (FM) scores and reach capacities, stroke survivors were placed in either mild or severe impairment groups. Individual completed sets of reach-to-target tasks over two visits. The averaged reach curve for each subject was analyzed for angular orientation and velocity profile. The Procrustes method of statistical shape analysis was modified to identify reaching sub-movements that were incongruous to control sub-movements.\newline Findings. Reach-to-target curves were investigated for 15 individuals with mild impairment (FM \(52 \pm 9\)) and 14 individuals with severe impairment (FM \(16 \pm 7\)). The endpoint kinematic analysis found that individuals with severe impairment demonstrate lower peak velocities (centimeters per second) [\(28.5 \pm 17.3 , 80.3 \pm 29.5\)] which occurred sooner in the movement (milliseconds) [\(36.81 \pm 27.0, 59.6 \pm 14.8\)]. The mild group demonstrated variability in orientation in the medial-lateral space, and movement initiation that was congruous to healthy movement. The severe impairment group demonstrated variability in orientation in every axis and showed incongruous initiation and completion behaviors, with some comparable movement in between. \newline<br> <br> Interpretation. Endpoint analysis is a valuable option for clinicians to inform physiotherapy. In addition to kinematic metrics such as orientation and velocity, sub-movements that are comparable to healthy movement can be identified in both mild and severe impairment.
DOI: 10.5281/zenodo.7587160
title: aKmerBroom ancient Bloom filter

description: Bloom filter built on set of trusted oral k-mers as described in the manuscript "aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets" See GitHub repo https://github.com/CamilaDuitama/aKmerBroom for instructions on how to use it
DOI: 10.5281/zenodo.7587159
title: aKmerBroom ancient Bloom filter

description: Bloom filter built on set of trusted oral k-mers as described in the manuscript "aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets" See GitHub repo https://github.com/CamilaDuitama/aKmerBroom for instructions on how to use it