cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14691441.v4
title: A bio-inspired robotic climbing robot to understand kinematic and morphological determinants for an optimal climbing gait

description: <b>Abstract</b> Robotic advances for increasingly complex tasks especially in the field of search and rescue or exploration are limited for wheeled systems, therefore the study of legged locomotion for robotic applications has become more important. To successfully navigate in regions with rough terrain, a robot must not only be able to negotiate obstacles, but also climb steep inclines. Following the principles of biomimetics, we developed a modular bio-inspired climbing robot, using generic hardware components and rapid prototyping, aiming to mimic the lizards bauplan including an actuated spine, shoulders, and feet which interlock with the surface via claws. We included the ability to modify gait and hardware parameters and simultaneously collect data with the robot’s sensors on climbed distance, slip occurrence and efficiency. We first explored the speed-stability trade off and its interaction with limb swing phase dynamics, finding a sigmoidal pattern of limb movement resulted in the greatest distance travelled. By modifying wrist orientation, we found two optima for both speed and stability, suggesting multiple stable configurations. We varied spine and limb range of motion, again showing two possible optimum configurations, and finally varied the centre of pro- and retraction on climbing performance, showing an advantage for protracted limbs during the stride. We then stacked optimal regions of performance and show that combining optimal dynamic patterns with either foot angles or ROM configurations have the greatest performance, but further optima stacking resulted in a decrease in performance, suggesting complex interactions between kinematic parameters. The search of optimal parameter configurations might not only be beneficial to improve robotic in-field operations but may also further the study of the locomotive evolution of climbing of animals, like lizards or insects.
DOI: 10.6084/m9.figshare.14691441.v3
title: A bio-inspired robotic climbing robot to understand kinematic and morphological determinants for an optimal climbing gait

description: <b>Abstract</b> Robotic advances for increasingly complex tasks especially in the field of search and rescue or exploration are limited for wheeled systems, therefore the study of legged locomotion for robotic applications has become more important. To successfully navigate in regions with rough terrain, a robot must not only be able to negotiate obstacles, but also climb steep inclines. Following the principles of biomimetics, we developed a modular bio-inspired climbing robot, using generic hardware components and rapid prototyping, aiming to mimic the lizards bauplan including an actuated spine, shoulders, and feet which interlock with the surface via claws. We included the ability to modify gait and hardware parameters and simultaneously collect data with the robot’s sensors on climbed distance, slip occurrence and efficiency. We first explored the speed-stability trade off and its interaction with limb swing phase dynamics, finding a sigmoidal pattern of limb movement resulted in the greatest distance travelled. By modifying wrist orientation, we found two optima for both speed and stability, suggesting multiple stable configurations. We varied spine and limb range of motion, again showing two possible optimum configurations, and finally varied the centre of pro- and retraction on climbing performance, showing an advantage for protracted limbs during the stride. We then stacked optimal regions of performance and show that combining optimal dynamic patterns with either foot angles or ROM configurations have the greatest performance, but further optima stacking resulted in a decrease in performance, suggesting complex interactions between kinematic parameters. The search of optimal parameter configurations might not only be beneficial to improve robotic in-field operations but may also further the study of the locomotive evolution of climbing of animals, like lizards or insects.
DOI: 10.6084/m9.figshare.15079248
title: Shifting season of fire and its impact on reproductive effort in resprouting plants

description: This data was collected in Sydney, Australia with the intent of exploring impacts of fire season on resprouting shrub species.<br>At each site, a random location was established and a 30 metre transect laid out. All resprouting plants within a two metre distance from the transect were assessed for resprout growth and reproductive output between May and July 2019. The variables measured included two vegetative growth responses; number of resprouts, and length of resprouts, and reproductive response (number of flowers and fruits produced). Number of inflorescences were counted for Banksia serrata and Lambertia formosa (NB still referred to as number of flowers). Size characteristics of each individual plant pre-fire were estimated by measuring height and diameter (at 1 metre high) of the thickest stem or trunk, and width of base/lignotuber. Diameter of stem was found to be the most consistently available measurement to infer size/age of plant before fire across all the study species. For the study species with basal and epicormics resprouting, B. serrata and L. trinervium, data were analysed for each response separately, to test for the effects of seasonality on different resprouting mechanisms (NB column "response").<br>To assess variation in severity of fire between sites, minimum diameter (see Whight et al. 1999) of five branch tips at chest height was measured on, where possible, 10 individual plants at each site (predominately Leptospermum trinervium). The average of the total tip measurements was calculated to give a severity score for each site.
DOI: 10.6084/m9.figshare.15079248.v1
title: resproutdata_THOMSENA.xlsx

description: This data was collected in Sydney, Australia with the intent of exploring impacts of fire season on resprouting shrub species.<br>At each site, a random location was established and a 30 metre transect laid out. All resprouting plants within a two metre distance from the transect were assessed for resprout growth and reproductive output between May and July 2019. The variables measured included two vegetative growth responses; number of resprouts, and length of resprouts, and reproductive response (number of flowers and fruits produced). Number of inflorescences were counted for Banksia serrata and Lambertia formosa (NB still referred to as number of flowers). Size characteristics of each individual plant pre-fire were estimated by measuring height and diameter (at 1 metre high) of the thickest stem or trunk, and width of base/lignotuber. Diameter of stem was found to be the most consistently available measurement to infer size/age of plant before fire across all the study species. For the study species with basal and epicormics resprouting, B. serrata and L. trinervium, data were analysed for each response separately, to test for the effects of seasonality on different resprouting mechanisms (NB column "response").<br>To assess variation in severity of fire between sites, minimum diameter (see Whight et al. 1999) of five branch tips at chest height was measured on, where possible, 10 individual plants at each site (predominately Leptospermum trinervium). The average of the total tip measurements was calculated to give a severity score for each site.
DOI: 10.25345/c58n8k
title: MassIVE MSV000087919 - Endophytic fungi from Brazilian Pantanal
title: Extract of Nigrospora sphaerica obtained from vegetal species of Pantanal
DOI: 10.6084/m9.figshare.15079326
title: Qualitative interviews

description: Transcripts of 90 interviews that were part of the qualitative study of the EIS-COVID project (ANID-COVID 0508). Data were collected through semi-structured interviews (N = 90) with people from the groups most at risk for COVID-19: a) adults older than 64 years and b) people between 18 and 64 years old with diabetes and hypertension. People who completed the national EIS COVID survey (eiscovid.cl) and met the inclusion criteria were recruited as participants. The interviews addressed sociocultural conditions, health practices, and exposure to information about the pandemic. The study was approved by the ethics committee of the Diego Portales University in Chile and the participants gave oral informed consent prior to applying the interview. This project was funded by ANID grant number COVID0508.
DOI: 10.6084/m9.figshare.15079347.v1
title: Magnon transport properties data

description: The spin Seebeck effect (SSE) in ferromagnetic insulators provides a simple method that employs heat to manipulate magnons, which could be used as carriers of information and energy conversion. However, a theory that can quantatively interpret experimental results is still lacking. In this manuscript, we first reviewed the important experimental results of the spin Seebeck effect in ferromagnetic insulator materials in the past few years, and through theoretical analysis, we develop the equations for magnon transport and find that the temperature-dependent longitudinal SSE is dominated by magnon-phonon scattering at low temperature region, rather than magnon-magnon scattering. The relaxation time of magnon-phonon scattering follows <i>T<sup>-3.3</sup></i> dependence. At very low temperature region, the magnon enters the ballistic transport process, the temperature dependence of the relaxation time is <i>T<sup>-1/2</sup></i>. The mode is in excellent agreement with the experimental results. In addition, we have also derived equations that explain the position dependence of SSE with an in-plane temperature gradient. The transverse distribution of the magnon temperature corresponding to the number of magnons is consistent with the experimental measurement, and the linear spatial distribution of the transverse SSE signal with position is given.
DOI: 10.6084/m9.figshare.15079347
title: Magnon transport properties data

description: The spin Seebeck effect (SSE) in ferromagnetic insulators provides a simple method that employs heat to manipulate magnons, which could be used as carriers of information and energy conversion. However, a theory that can quantatively interpret experimental results is still lacking. In this manuscript, we first reviewed the important experimental results of the spin Seebeck effect in ferromagnetic insulator materials in the past few years, and through theoretical analysis, we develop the equations for magnon transport and find that the temperature-dependent longitudinal SSE is dominated by magnon-phonon scattering at low temperature region, rather than magnon-magnon scattering. The relaxation time of magnon-phonon scattering follows <i>T<sup>-3.3</sup></i> dependence. At very low temperature region, the magnon enters the ballistic transport process, the temperature dependence of the relaxation time is <i>T<sup>-1/2</sup></i>. The mode is in excellent agreement with the experimental results. In addition, we have also derived equations that explain the position dependence of SSE with an in-plane temperature gradient. The transverse distribution of the magnon temperature corresponding to the number of magnons is consistent with the experimental measurement, and the linear spatial distribution of the transverse SSE signal with position is given.
DOI: 10.5281/zenodo.5146326
title: Hurricane Michael - SAMURAI analysis files created from NOAA P-3 tail Doppler radar data

description: This repository contains analyses of Hurricane Michael created from quality controlled data from the NOAA P3 tail Doppler radar. The TDR data can be found in its raw format at the following link under the folders 20181008H1, 20181009H1, 20181009H2, and 20181010H1: https://seb.noaa.gov/pub/acdata/2018/RADAR/ The analyses are the topic of the manuscript 'Vertical Vortex Development in Hurricane Michael (2018) during Rapid Intensification' which is in review as of dataset publication. Please cite the manuscript when using this data as it contains methodological information on how the analyses were created. More information about the center fix times each analysis file is related to are available in the manuscript. Code to run the SAMURAI analysis tool which created these files, information on how SAMURAI works, and directions can be found at the following 2 links: https://github.com/mmbell/samurai http://wiki.lrose.net/index.php/SAMURAI
DOI: 10.5281/zenodo.5146325
title: Hurricane Michael - SAMURAI analysis files created from NOAA P-3 tail Doppler radar data

description: This repository contains analyses of Hurricane Michael created from quality controlled data from the NOAA P3 tail Doppler radar. The TDR data can be found in its raw format at the following link under the folders 20181008H1, 20181009H1, 20181009H2, and 20181010H1: https://seb.noaa.gov/pub/acdata/2018/RADAR/ The analyses are the topic of the manuscript 'Vertical Vortex Development in Hurricane Michael (2018) during Rapid Intensification' which is in review as of dataset publication. Please cite the manuscript when using this data as it contains methodological information on how the analyses were created. More information about the center fix times each analysis file is related to are available in the manuscript. Code to run the SAMURAI analysis tool which created these files, information on how SAMURAI works, and directions can be found at the following 2 links: https://github.com/mmbell/samurai http://wiki.lrose.net/index.php/SAMURAI
DOI: 10.25345/c54z6p
title: MassIVE MSV000087920 - Endophytic fungi from Brazilian Pantanal
title: Extract of Daldinia sp. obtained from plants of Pantanal
DOI: 10.6084/m9.figshare.15079386
title: Supplementary files for ABM-20-d-21-00092

description: Supplementary figures and tables for the manuscript ABM-20-d-21-00092
DOI: 10.6084/m9.figshare.15079386.v1
title: Supplementary files for ABM-20-d-21-00092

description: Supplementary figures and tables for the manuscript ABM-20-d-21-00092
DOI: 10.5517/ccdc.csd.cc28hdx3
title: CCDC 2100185: Experimental Crystal Structure Determination

description: Related Article: Riadh BOURZAMI|2021|CSD Communication|||
DOI: 10.5281/zenodo.5147034
title: X-ray CT and MAPS data of Hot-dry rock

description: These multiple scanning experiment image can be used to construct multi-scale multi component digital rock.
DOI: 10.6073/pasta/93d78d60c4672a8120d573d844739286
title: Groundwater Well Data from the Middle Rio Grande Valley Riparian Zone, New Mexico (1999-2014)

description: This study originated with the objective of parameterizing riparian evapotranspiration (ET) in the water budget of the middle Rio Grande of New Mexico. We hypothesized that flooding and invasions of non-native species would impact the ecosystem's use of water. Our objectives were to measure and compare the ET of native (Rio Grande cottonwood, Populus deltoides ssp. wizleni) and non-native (saltcedar, Tamarix chinensis, Russian olive, Eleagnus angustifolia) bosque (woodland) communities and to evaluate how water use is affected by climatic variability resulting in high river flows and flooding as well as drought conditions and deep water tables. This data set contains water table levels monitored at nine sites along the Rio Grande riparian corridor between Albuquerque and Bosque del Apache National Wildlife Refuge. Data date to 1999. Two sites remain active and are well into their second decade of monitoring. One is in a xero-riparian, non-flooding, saltcedar woodland within the Sevilleta National Wildlife Refuge. The other is in a dense, monotypic saltcedar thicket at the Bosque del Apache NWR that is subject to flood pulses associated with high river flows.
DOI: 10.5281/zenodo.4025240
title: Investigating the Effect of Positional Variation on Mid-Lactation Mammary Gland Transcriptomics in Mice Fed Either a Low-Fat or High-Fat Diet

description: Investigating the Effect of Positional Variation on Mid-Lactation Mammary Gland Transcriptomics in Mice Fed Either a Low-Fat or High-Fat Diet.
DOI: 10.5281/zenodo.4025239
title: Investigating the Effect of Positional Variation on Mid-Lactation Mammary Gland Transcriptomics in Mice Fed Either a Low-Fat or High-Fat Diet

description: Investigating the Effect of Positional Variation on Mid-Lactation Mammary Gland Transcriptomics in Mice Fed Either a Low-Fat or High-Fat Diet.
DOI: 10.5281/zenodo.5137999
title: nan

description: nan
DOI: 10.5281/zenodo.5144630
title: nan

description: nan
DOI: 10.5281/zenodo.5137998
title: nan

description: nan
DOI: 10.26036/cnp0000880
title: 条斑紫菜孢子体和配子体固碳机制的研究

description: 孢子体用Si表示， 配子体用Y表示。 0代表低碳条件，1代表正常碳，即对照组；2代表高碳条件。每组3个重复。
DOI: 10.6084/m9.figshare.13283933
title: X-ray microCT of tomato stems from healthy plants and plants infected with Ralstonia (a bacterial wilt pathogen). Dataset 2: Excised Stem experiment.

description: Full resolution X-ray micro CT reconstructions of tomato stems from healthy plants and plants infected with Ralstonia (a bacterial wilt pathogen). <br><br><br>The first file has information on how to interpret the image and it notes some of the reconstruction artefacts that are visible in the images. <br><br>Subsequently, the composite supplemental figures are present. These figures show low resolution versions of each of the samples and are organized by condition:<br>1. <b>H</b>1-<b>H</b>14: <b>H</b>ealthy Stems<br>2. <b>1G</b>1-<b>1G</b>12: <i>Ralstonia</i> <b>GMI1000</b> infected stems <b>1 dpi </b>(10^4 cfu inoculum)3. 2<b>G</b>1-<b>2G</b>12<i> Ralstonia</i> <b>GMI1000 </b>infected stems 2 dpi (10^4 cfu inoculum)<br>4. 2h<b>G</b>1-<b>2hG</b>12: <i>Ralstonia</i> <b>GMI1000 </b>infected stems<b> 2 dpi </b>(High inoculum: 10^6 cfu)<br><br>Each high resolution cross-section is labeled with the sample ID in the file name. Other values refer to values used to reconstruct the 3D images with the tomopy script. <br>* Importantly, some images required multiple <i>center of rotation (COR)</i> values to reconstruct different regions of the stem in focus. (Multiple <i>CORs </i>were necessary because the sample continued to dry/shrink during the scan, so the center of rotation changed over time). For instance sample H2 required 5 different COR values to get different vascular bundles in focus. Refer to the "How to interpret" file to see which regions are in focus on each of the high resolution images. <br><br>Raw data is available upon request. Each sample is ~2-10 Gb, and we could not find a public database to deposit the data into. <br><br>To add:-Link to BioRxiv<br><br>
DOI: 10.6084/m9.figshare.15079517.v1
title: Additional file 1 of Pulmonary hypertension in systemic sclerosis: diagnosis by systematic screening and prognosis after three years follow-up

description: Additional file 1.: The results of clinical, laboratory, spirometric, echocardiographic and hemodynamic data.
DOI: 10.6084/m9.figshare.15079517
title: Additional file 1 of Pulmonary hypertension in systemic sclerosis: diagnosis by systematic screening and prognosis after three years follow-up

description: Additional file 1.: The results of clinical, laboratory, spirometric, echocardiographic and hemodynamic data.
DOI: 10.6084/m9.figshare.15079570.v1
title: Additional file 1 of Efficient methods for acute stress detection using heart rate variability data from Ambient Assisted Living sensors

description: Additional file 1. The measurement data (RR intervals) used in model building.
DOI: 10.6084/m9.figshare.15079570
title: Additional file 1 of Efficient methods for acute stress detection using heart rate variability data from Ambient Assisted Living sensors

description: Additional file 1. The measurement data (RR intervals) used in model building.
DOI: 10.6084/m9.figshare.15079628
title: Additional file 1 of Origins and pathways of deeply derived carbon and fluids observed in hot spring waters from non-active volcanic fields, western Kumamoto, Japan

description: Additional file 1: Table S1. Location, property, and measurement and analytical results for all water samples collected in this study from western coast of Kumamoto in western Kyushu, Japan.
DOI: 10.6084/m9.figshare.15079628.v1
title: Additional file 1 of Origins and pathways of deeply derived carbon and fluids observed in hot spring waters from non-active volcanic fields, western Kumamoto, Japan

description: Additional file 1: Table S1. Location, property, and measurement and analytical results for all water samples collected in this study from western coast of Kumamoto in western Kyushu, Japan.
DOI: 10.6084/m9.figshare.15079667
title: Additional file 10 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 10: Table S9. Inflammation and disease location specific DEncRNAs. DE analysis results for ileal (n = 345) biopsies by comparing disease inflammation status, non-inflamed, inflamed, against controls and within-CD. All FDR significant DEncRNAs and nominally significant (P
DOI: 10.6084/m9.figshare.15079673
title: Additional file 12 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 12: Table S11. Using RandomForest, n = 274 ileal patients were randomly split into equal number of samples, n = 14 B1 and n = 14 B2. These were further aliquoted into test and train datasets for cross-validation of AUC with n = 13,777 ncRNAs, base mean greater than n &gt; 10.00. The input included n = 14 B1 and n = 14 B2 used to test disease versus controls status by evaluating model and test for accuracy based on sensitivities and specificity.
DOI: 10.6084/m9.figshare.15079667.v1
title: Additional file 10 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 10: Table S9. Inflammation and disease location specific DEncRNAs. DE analysis results for ileal (n = 345) biopsies by comparing disease inflammation status, non-inflamed, inflamed, against controls and within-CD. All FDR significant DEncRNAs and nominally significant (P
DOI: 10.6084/m9.figshare.15079670
title: Additional file 11 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 11: Table S10. Using RandomForest, n = 345 ileal patients were randomly split into equal number of samples, n = 71 controls and n = 71 CD. These were further aliquoted into test and train datasets for cross-validation of AUC with n = 13,777 ncRNAs, base mean greater than n &gt; 10.00. The input included n = 71 CD and n = 71 controls used to test disease versus controls status by evaluating model and test for accuracy based on sensitivities and specificity.
DOI: 10.6084/m9.figshare.15079670.v1
title: Additional file 11 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 11: Table S10. Using RandomForest, n = 345 ileal patients were randomly split into equal number of samples, n = 71 controls and n = 71 CD. These were further aliquoted into test and train datasets for cross-validation of AUC with n = 13,777 ncRNAs, base mean greater than n &gt; 10.00. The input included n = 71 CD and n = 71 controls used to test disease versus controls status by evaluating model and test for accuracy based on sensitivities and specificity.
DOI: 10.6084/m9.figshare.15079673.v1
title: Additional file 12 of Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

description: Additional file 12: Table S11. Using RandomForest, n = 274 ileal patients were randomly split into equal number of samples, n = 14 B1 and n = 14 B2. These were further aliquoted into test and train datasets for cross-validation of AUC with n = 13,777 ncRNAs, base mean greater than n &gt; 10.00. The input included n = 14 B1 and n = 14 B2 used to test disease versus controls status by evaluating model and test for accuracy based on sensitivities and specificity.