cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/8hku3i/agjpip
title: petitions.xlsx
DOI: 10.7910/dvn/aarigo/wto2xc
title: petitions.xlsx
DOI: 10.7910/dvn/dx4vwp/c585tf
title: WordEmbeddingFactualAssociationTestProfessions.java
DOI: 10.7910/dvn/kscfmm/itbn9d
title: petitions.xlsx
DOI: 10.7910/dvn/nzk4op/9royoh
title: petitions.xlsx
DOI: 10.5281/zenodo.7122113
title: New insights into the decadal variability in glacier volume of a tropical ice-cap explained by the morpho-topographic and climatic context, Antisana, (0°29' S, 78°09' W)

description: The dataset contains five periods of surface elevation change observed on the Antisana icecap in the inner tropical region. Data were obtained by geodetic observations of aerial photographs and high-resolution satellite images for the study periods: 1956-1965, 1965-1979, 1979-1997, 1997-2009, and 2009-2016.
DOI: 10.5281/zenodo.7122112
title: New insights into the decadal variability in glacier volume of a tropical ice-cap explained by the morpho-topographic and climatic context, Antisana, (0°29' S, 78°09' W)

description: The dataset contains five periods of surface elevation change observed on the Antisana icecap in the inner tropical region. Data were obtained by geodetic observations of aerial photographs and high-resolution satellite images for the study periods: 1956-1965, 1965-1979, 1979-1997, 1997-2009, and 2009-2016.
DOI: 10.6084/m9.figshare.21226328.v1
title: Bryum_argenteum genome assembly

description: Bryum argenteum genome assembly file in fasta format.
DOI: 10.6084/m9.figshare.21226328.v2
title: Bryum_argenteum genome assembly and annotation

description: Bryum argenteum genome assembly and annotation files.
DOI: 10.6084/m9.figshare.21226328.v3
title: Bryum_argenteum genome assembly and annotation

description: Bryum argenteum genome assembly and annotation files.
DOI: 10.6084/m9.figshare.18954531
title: Indonesian urban forest policies, practice and bioenergy potential of urban forest tree species

description: This study examines Indonesian urban forest policy, practice, and potential with reference to forest composition and bioenergy potential. The results showed that there are challenges in the implementation of urban forest policies into urban forest practices. For example, the land size allocation for urban forests in Jakarta, Surabaya, and Malang is still not in accordance with the existing policies as their land size is far less than 10% of these total areas. Predominant tree species in Indonesian urban forestry are <i>Pterocarpus indicus, Delonix regia, Polyalthia longifolia, Lagerstroemia speciosa, Mimusops elengi, Samanea saman, Tectona grandis, Ficus benjamina, Mangifera indica</i>, and <i>Tamarindus indica</i>. These trees are considered as multipurpose species that can be utilised for bioenergy, wood-based furniture, food and foraging, medicine, and many other uses. Aside from firewood and charcoal, these trees should be explored for their potential as biofuel, biogas, bio-pellet, and electricity generation. Bioenergy potential of urban forest trees can be an important consideration for the Government of Indonesia to actualise the potential of the urban forest and to create energy-independent cities.
DOI: 10.6084/m9.figshare.18954531.v1
title: Indonesian urban forest policies, practice and bioenergy potential of urban forest tree species

description: This study examines Indonesian urban forest policy, practice, and potential with reference to forest composition and bioenergy potential. The results showed that there are challenges in the implementation of urban forest policies into urban forest practices. For example, the land size allocation for urban forests in Jakarta, Surabaya, and Malang is still not in accordance with the existing policies as their land size is far less than 10% of these total areas. Predominant tree species in Indonesian urban forestry are <i>Pterocarpus indicus, Delonix regia, Polyalthia longifolia, Lagerstroemia speciosa, Mimusops elengi, Samanea saman, Tectona grandis, Ficus benjamina, Mangifera indica</i>, and <i>Tamarindus indica</i>. These trees are considered as multipurpose species that can be utilised for bioenergy, wood-based furniture, food and foraging, medicine, and many other uses. Aside from firewood and charcoal, these trees should be explored for their potential as biofuel, biogas, bio-pellet, and electricity generation. Bioenergy potential of urban forest trees can be an important consideration for the Government of Indonesia to actualise the potential of the urban forest and to create energy-independent cities.
DOI: 10.6084/m9.figshare.21227135
title: Unmixed FCS files of 9 Fluorescent proteins

description: FCS files of 9 fluorescent proteins coupled to beads. The samples were run on a Cytek Aurora and unmixed.
DOI: 10.6084/m9.figshare.21227135.v1
title: Unmixed FCS files of 9 Fluorescent proteins

description: FCS files of 9 fluorescent proteins coupled to beads. The samples were run on a Cytek Aurora and unmixed.
DOI: 10.25909/14482980.v5
title: ForceID Dataset A

description: This is the dataset associated with the article, ‘<em>Deep Metric Learning for Scalable Gait Based Person Re-identification Using Force Platform Data.</em>’ <br> Note: Please see version 3 for the data subset used in the TechRxiv pre-print article, '<em>The Most Discriminant components of Force Platform Data for Gait Based Person Re-identification</em>' (10.36227/techrxiv.16683229.v1). <br> <strong>Dataset overview</strong> This dataset was acquired for research on the use of gait as a (soft) biometric for person re-identification (re-ID)/recognition; however, it may be used to answer a variety of research questions. It is the largest and most complex force platform dataset purpose built for person re-ID. It contains 5327 walking trials from 184 healthy participants, with inter- and intra-individual variation in clothing, footwear, and walking speed, as well as inter-individual variation in time between trials (data was collected over two sessions separated by 3-14 days depending on the individual). The dataset was generated through a repeated measures experiment (approved by the Human Research Ethics Committee - approval No. H-2018-009) conducted at The University of Adelaide gait analysis laboratory. <strong>Experimental protocol</strong> At the start of each session, age, sex, mass, height, and footwear type were recorded, as participants wore personal clothing and footwear. Footwear was also photographed for future reference. Next, participants walked in one direction along the length of the laboratory (≈10m) five times at three self-selected speeds: preferred, slower than preferred, and faster than preferred. Two in-ground OPT400600-HP force platforms (Advanced Mechanical Technology Inc., USA) in the center of the laboratory measured GRFs and GRMs during left and right footsteps. These measures, along with calculated COP coordinates, were acquired through Vicon Nexus (Vicon Motion Systems Ltd, UK) at 2000 Hz. Of note, all trials in this dataset were complete foot contacts; that is, each foot contacted completely within the area of each force platform, as identified from video footage. <br> <strong>User guide</strong> The code repository to implement this dataset can be found at https://bit.ly/3SBWSJp. The dataset is organised into separate spreadsheets that each contain all samples of a particular component from a given force platform (named as component_platform). Both raw and processed ('pro') versions are available. Within each of the data spreadsheets is accessory information about each trial in the first five columns, followed by the data in column six onward. Within the metadata spreadsheet are the ID numbers and their associated demographics. The ID numbers in the first column are from the private version of the dataset that was implemented for the manuscript. These can be cross-referenced with the ID numbers generated for the public dataset in the code repository. This means that the challenging IDs listed in Supplemental Material - Table VII (in the article) can be located in this dataset.
DOI: 10.5517/ccdc.csd.cc25zn2x
title: CCDC 2025449: Experimental Crystal Structure Determination

description: Related Article: José L. Andrés, Elizabeth Suárez, Marta Martín, Eduardo Sola|2022|Organometallics|41|2622|doi:10.1021/acs.organomet.2c00375
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20422245
title: COVID-19 antibody mother infant dataset

description: Dataset to accompany manuscript and results presented from original analysis of prospective maternal and infant antibody levels in a comparative sample of mothers with and without SARS-CoV-2 infection
DOI: 10.6084/m9.figshare.20422245.v3
title: COVID-19 antibody mother infant dataset

description: Dataset to accompany manuscript and results presented from original analysis of prospective maternal and infant antibody levels in a comparative sample of mothers with and without SARS-CoV-2 infection
DOI: 10.6084/m9.figshare.20422245.v2
title: COVID-19 antibody mother infant dataset

description: Dataset to accompany manuscript and results presented from original analysis of prospective maternal and infant antibody levels in a comparative sample of mothers with and without SARS-CoV-2 infection
DOI: 10.5281/zenodo.7119981
title: NGS in the clinical microbiology settings

description: This dataset contains bam files from 16s rRNA targeted NGS sequencing from a variety of clinical specimens. The study included 55 specimens from 51 patients. We compared targeted NGS to Sanger sequencing in clinical samples submitted for Sanger sequencing. NGS: We sequenced the amplified V1-2 or V4 regions of 16s rRNA gene with Ion S5™ System (Thermo Fisher Scientific). Data were analyzed using the Ion Reporter bioinformatics Software pipeline (Thermo Fisher Scientific), using a threshold of 1000 mapped reads for designating significant pathogens. BAM files uploaded to the Ion Reporter were mapped to the Silva 138 SSU database.
DOI: 10.5281/zenodo.7119980
title: NGS in the clinical microbiology settings

description: This dataset contains bam files from 16s rRNA targeted NGS sequencing from a variety of clinical specimens. The study included 55 specimens from 51 patients. We compared targeted NGS to Sanger sequencing in clinical samples submitted for Sanger sequencing. NGS: We sequenced the amplified V1-2 or V4 regions of 16s rRNA gene with Ion S5™ System (Thermo Fisher Scientific). Data were analyzed using the Ion Reporter bioinformatics Software pipeline (Thermo Fisher Scientific), using a threshold of 1000 mapped reads for designating significant pathogens. BAM files uploaded to the Ion Reporter were mapped to the Silva 138 SSU database.
DOI: 10.6084/m9.figshare.21227264.v1
title: Raw data FSC files for 9 fluorescent proteins coupled to microspheres

description: Raw data FCS files for 9 fluorescent proteins run on a 5 laser Cytel Aurora cytometer.
DOI: 10.6084/m9.figshare.21227264
title: Raw data FSC files for 9 fluorescent proteins coupled to microspheres

description: Raw data FCS files for 9 fluorescent proteins run on a 5 laser Cytel Aurora cytometer.
DOI: 10.6084/m9.figshare.13554614
title: Plant indicator species for the conservation of priority forest in an insular forestry area, Yambaru, Okinawa Island

description: Degradation of old-growth forests is an important issue for global biodiversity conservation. Robust indicator species greatly facilitate the identification of old-growth forests requiring protection. Understanding why particular species are associated with priority forests is necessary for assessing the reliability of indicator species. Here, we surveyed the vegetation of 69 sites in Yambaru forests (Okinawa Island) varying in forest age and analyzed the relationships between the dominance of vascular species and three criterion parameters (forest age and species richness (SR) of epiphytes and endangered plants). Eleven species showing significant positive correlations with three parameters were designated as potential candidate indicator species, ten of which were woody species. Of the above eleven candidate indicator species, <i>Distylium racemosum</i> was considered one of the most useful indicator species because it can be easily identified in the field and its ecological characteristics are well documented. Regarding three woody traits – sprouting ability, annual growth rate and wood density – which are expected as the cause of indexing, endangered SR increased when tree species with low sprouting ability and high wood density were dominant, and epiphyte SR increased when tree species with low annual growth rate and high wood density were dominant. These woody species traits were associated with forest age and could explain why <i>D. racemosum</i> is an indicator of priority forest. These results suggest that large trees with such woody characteristics are effective indicators of priority forests.
DOI: 10.6084/m9.figshare.13554614.v1
title: Plant indicator species for the conservation of priority forest in an insular forestry area, Yambaru, Okinawa Island

description: Degradation of old-growth forests is an important issue for global biodiversity conservation. Robust indicator species greatly facilitate the identification of old-growth forests requiring protection. Understanding why particular species are associated with priority forests is necessary for assessing the reliability of indicator species. Here, we surveyed the vegetation of 69 sites in Yambaru forests (Okinawa Island) varying in forest age and analyzed the relationships between the dominance of vascular species and three criterion parameters (forest age and species richness (SR) of epiphytes and endangered plants). Eleven species showing significant positive correlations with three parameters were designated as potential candidate indicator species, ten of which were woody species. Of the above eleven candidate indicator species, <i>Distylium racemosum</i> was considered one of the most useful indicator species because it can be easily identified in the field and its ecological characteristics are well documented. Regarding three woody traits – sprouting ability, annual growth rate and wood density – which are expected as the cause of indexing, endangered SR increased when tree species with low sprouting ability and high wood density were dominant, and epiphyte SR increased when tree species with low annual growth rate and high wood density were dominant. These woody species traits were associated with forest age and could explain why <i>D. racemosum</i> is an indicator of priority forest. These results suggest that large trees with such woody characteristics are effective indicators of priority forests.
DOI: 10.15151/esrf-es-874803422
title: The Netherlands BAG

description: The Netherlands BAG includes groups situated at five Dutch universities (Utrecht, Groningen, Amsterdam, Wageningen and Eindhoven) and at the Netherlands Cancer Institute in Amsterdam, with a total of twelve PIs. The structural biology research carried out in these groups is highly diverse, including prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Central to many projects are protein receptors and their interactions with other proteins and with small molecule modulators. An additional major research area concerns structure-based protein engineering and design aiming at the characterization and engineering of new enzymes for green chemistry and new-to-nature reactions. Projects deal with membrane and soluble proteins, cell surface receptors, and protein-protein, protein-ribonucleotide, protein-drug and enzyme-ligand complexes.
DOI: 10.15151/esrf-es-939107697
title: X-ray phase contrast tomography of sintered Ti64 additively manufactured cans

description: Phase contrast tomography of varied degrees of sintered Ti64 cans manufactured at Renishaw. Will examine various degrees of sintering and the effects of changing laser fluence (via defocusing), multi-pass laser scans and scan strategy.
DOI: 10.24396/ordar-105
title: Bells paper

description: Oxygen isotopic data for the Bells paper
DOI: 10.15468/mpifue
title: BIOSKAG-collections

description: Spatial and temporal data (EVENT DATA) from a total of 178 sampling events of marine benthic invertebrates from two sampling project periods: 27 events from coastal areas near Arendal and deeper parts of Skagerrak collected in June 2006 with research vessel R/V “G.M. Dannevig”. The sampling was organised by Christoffer Schander, University of Bergen. 151 events from deep areas of Skagerrak collected in May 2009 with research vessel R/V “Håkon Mosby”. The sampling was organised by Christoffer Schander, University of Bergen in collaboration with the the Swedish Species Information Centre. This dataset is deliberately published WITHOUT OCCURRENCES. The dataset describes collaborative collecting efforts during marine expeditions. The collected material is deposited in the national university museum collections in Norway. Many of the museum specimens are not yet digitized (status per 2018) but will be linked to these datasets using the corresponding eventID when they are published in GBIF.
DOI: 10.15468/zfcaa5
title: POLYSKAG-collections

description: Spatial and temporal data (EVENT DATA) from a total of 50 samples of marine benthic invertebrates from three sampling project periods: 22 sampling localities in coastal waters from Grimstad to Sandefjord on the south coast of Norway collected in May 2011 with research vessel R/V “Sea Master”. 10 sampling localities from the Oslofjord collected in October 2011 with research vessel R/V “Trygve Braarud”. 18 sampling localities from the Oslofjord near Drøbak collected in October 2014 with research vessel R/V “Bjørn Føyn”. This dataset is deliberately published WITHOUT OCCURRENCES. The dataset describes collaborative collecting efforts during marine expeditions. The collected material is deposited in the national university museum collections in Norway. Many of the museum specimens are not yet digitized (status per 2018) but will be linked to these datasets using the corresponding eventID when they are published in GBIF.
DOI: 10.6084/m9.figshare.14268034
title: Geochronology, geochemistry and tectonic setting of the Cadomian (Ediacaran–Cambrian) magmatism in the Istranca (Strandja) Massif: new insights into magmatism along the northern margin of Gondwana in NW Turkey

description: Cadomian (Ediacaran–Cambrian) magmatic rocks have been reported in the eastern (e.g. the Çatalca and İhsaniye plutons) and western (e.g. the Binkılıç and Safaalan plutons) parts of the Istranca (Strandja) Massif. This paper aims to investigate the tectonic setting and the magma evolution history of the Cadomian magmatic rocks using both new and previously existing geochemical and geochronological data. The meta-granitoid rocks with intermediate to felsic composition are the main magmatic activity in the region. They intrude into metamorphic basement rocks composed of gneiss, schist, amphibolite, calc-schist, and quartzites (the Tekedere group). These plutons show strong foliation and traces of the polyphase metamorphism. All plutons are peraluminous and slightly metaluminous, mostly calc-alkaline and high-K calc-alkaline, and plot into the volcanic arc granites (VAG) field on the tectono-magmatic discrimination diagrams. The zircon U–Pb crystallization ages of the plutons are between 525.3 ± 3.5 Ma and 548.7 ± 2.3 Ma. Initial εNd values vary from −0.02 to 1.86. Nd-T<sub>DM</sub> model ages range between 1.08 and 1.24 Ga and indicate that the primitive magmas were originated and/or assimilated by the remelting of Neoproterozoic juvenile crustal rocks. New geochemical and geochronological data suggest a magma generation within a subduction-related magmatic arc setting in response to the southward subduction of the Proto-Tethys Ocean during the Late Precambrian-Early Palaeozoic period in the Istranca Massif.
DOI: 10.6084/m9.figshare.14268034.v1
title: Geochronology, geochemistry and tectonic setting of the Cadomian (Ediacaran–Cambrian) magmatism in the Istranca (Strandja) Massif: new insights into magmatism along the northern margin of Gondwana in NW Turkey

description: Cadomian (Ediacaran–Cambrian) magmatic rocks have been reported in the eastern (e.g. the Çatalca and İhsaniye plutons) and western (e.g. the Binkılıç and Safaalan plutons) parts of the Istranca (Strandja) Massif. This paper aims to investigate the tectonic setting and the magma evolution history of the Cadomian magmatic rocks using both new and previously existing geochemical and geochronological data. The meta-granitoid rocks with intermediate to felsic composition are the main magmatic activity in the region. They intrude into metamorphic basement rocks composed of gneiss, schist, amphibolite, calc-schist, and quartzites (the Tekedere group). These plutons show strong foliation and traces of the polyphase metamorphism. All plutons are peraluminous and slightly metaluminous, mostly calc-alkaline and high-K calc-alkaline, and plot into the volcanic arc granites (VAG) field on the tectono-magmatic discrimination diagrams. The zircon U–Pb crystallization ages of the plutons are between 525.3 ± 3.5 Ma and 548.7 ± 2.3 Ma. Initial εNd values vary from −0.02 to 1.86. Nd-T<sub>DM</sub> model ages range between 1.08 and 1.24 Ga and indicate that the primitive magmas were originated and/or assimilated by the remelting of Neoproterozoic juvenile crustal rocks. New geochemical and geochronological data suggest a magma generation within a subduction-related magmatic arc setting in response to the southward subduction of the Proto-Tethys Ocean during the Late Precambrian-Early Palaeozoic period in the Istranca Massif.
DOI: 10.6084/m9.figshare.15134551
title: Age and implication of Late Ediacaran dykes in the İstanbul-Zonguldak Tectonic Unit (NW Turkey): Implications for the rifting of the Rheic Ocean

description: The İstanbul-Zonguldak Tectonic Unit is a part of Avalonia-Carolina and represents Far East Avalonia. It includes Ordovician to Carboniferous deposits which unconformably overlie Late Neoproterozoic metamorphic rocks. Timing of its detachment from West Gondwana-land, thus rifting of the Rheic Ocean, is poorly known. Here, I report on dacite, diabase and andesite dykes of Late Ediacaran igneous crystallization ages from the basement rocks and rift-deposits in the İstanbul-Zonguldak Tectonic Unit (NW Turkey). They are folded about a consistent axis and have porphyritic to intersertal textures. U-Pb dating on igneous zircons from folded dykes yielded Late Ediacaran ages of ca. 556.2 ± 2.2 Ma (2σ) and 552.1 ± 2.8 to 549.2 ± 2.3 Ma (2σ). Late Ediacaran dykes show calc-alkaline and alkaline affinities, and contain with-in plate components. Rift-related Late Ediacaran magmatism shows that the Yellice arc changed from an arc to a back-arc basin and the rift-deposits formed during the late Ediacaran due to the arc rifting. In conjunction with the data from literature, I suggest that the rift-related magmatism is related to the rifting event during the late Ediacaran, leading to the detachment of this continental block from the West Gondwana-land, thus to the opening of the Rheic Ocean, and Early Cambrian deformation event correspond to the adding of the Kraishte terrane with Far East Avalonia. The docking of the Kraishte terrane led to the deformation of Late Ediacaran dykes. Overall, these data indicate that the depositional time of sedimentary rocks in the continental fragment should have started during the late Ediacaran instead of Ordovician.