cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2mkxlq
title: CCDC 2430294: Experimental Crystal Structure Determination

description: Related Article: Shubham Deolka, Mohammad H. Samha, Aleria Garcia Roca, Graham C. Haug, James R. Howard, David Dalmau, Jesus Sandres, Serhii Vasylevskyi, Ryan T. VanderLinden, Robert S. Paton, Matthew S. Sigman|2025|J.Am.Chem.Soc.|147|12878|doi:10.1021/jacs.5c01738
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mmq22
title: CCDC 2432014: Experimental Crystal Structure Determination

description: Related Article: Yu-Ling Mao, Jia Yu, Bo-Yu Shan, Xin-Xin Liu, Jing-Ying Chu, Xin-Yue Ma, Miao Li, Yi-Meng Zheng, Bai-Li Zhu, Ming-Hui Zuo, Shu-Xin Cui|2025|New J.Chem.|49|7126|doi:10.1039/D5NJ00024F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kmdh3
title: CCDC 2372135: Experimental Crystal Structure Determination

description: Related Article: Udayan Mondal, Rajeshwari Pal, Bappaditya Goswami, Priyabrata Banerjee|2025|Analysis Sensing|5|e202400116|doi:10.1002/anse.202400116
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mp66r
title: CCDC 2433444: Experimental Crystal Structure Determination

description: Related Article: B.S. Palakshamurthy, H. Anil Kumar, H.C. Devarajegowda, H.T. Srinivasa, M. Harish Kumar|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|364|doi:10.1107/S2056989025002658
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxkmr
title: CCDC 2440525: Experimental Crystal Structure Determination

description: Related Article: Shitao Wu, Jianyu Zhang, Jing Zhang, Yanhang Ma|2025|J.Am.Chem.Soc.|147|12405|doi:10.1021/jacs.5c02745
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxkvz
title: CCDC 2440532: Experimental Crystal Structure Determination

description: Related Article: F.P. Malan, K. Potgieter, R. Meijboom|2025|IUCrData|10|x250296|doi:10.1107/S2414314625002962
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cyyz8
title: CCDC 2203541: Experimental Crystal Structure Determination

description: Related Article: S.U. Maheswari, S. Senthilkumar, S. Selvanayagam|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|389|doi:10.1107/S205698902500297X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kcmn7
title: CCDC 2364669: Experimental Crystal Structure Determination

description: Related Article: L. Yi, X. Wang, L. Chen|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|377|doi:10.1107/S2056989025002993
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxtr4
title: CCDC 2440777: Experimental Crystal Structure Determination

description: Related Article: F.D. Klotz, C. Alonso Felipe, F. Villafañe, C. Strohmann|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|372|doi:10.1107/S2056989025003019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxts5
title: CCDC 2440778: Experimental Crystal Structure Determination

description: Related Article: F.D. Klotz, C. Alonso Felipe, F. Villafañe, C. Strohmann|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|372|doi:10.1107/S2056989025003019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5z02zn21
title: MassIVE MSV000097772 - GNPS - Alzheimer's Bacteroides HILIC Serum
title: Wildtype and transgenic mice were treated with or without Bacteroides fragilis and brain serum samples were extracted for untargeted LC-MS analysis. LC-MS was conducted in positive mode with HILIC separation and a BEH amide column using the method described in (Lai, 2021). Fecal samples were spiked with labeled tyrosine (L-tyrosine (3,3-D2)).
DOI: 10.15468/dl.jrapma
title: Occurrence Download

description: A dataset containing 2527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eupithecia tripunctaria Herrich-Schäffer, 1852"
 ]
}

 The dataset includes 2527 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008864-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48610/5e4f89d
title: Faces vs Objects Eye-tracking Data

description: This study used posed and naturalistic faces of pain and neutrality to examine whether posed and naturalistic stimuli differ in their ability to capture attention. Posed stimuli were carefully curated and had no backgrounds. Naturalistic stimuli had backgrounds and very minimal editing was done, meaning they varied in terms of camera angles and image quality. These faces were paired with similarly edited objects in a dual-saccadic choice task. The excel file here contains the time until participants initiated a saccade towards one of the two presented stimuli, measured in milliseconds. The data is laid out according to the three main variables of interest - the target type (objects or faces), the stimulus type (posed or naturalistic), and the expression type (pain or neutral).
DOI: 10.15468/dl.9auj2t
title: Occurrence Download

description: A dataset containing 1632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Synanthedon myopaeformis (Borkhausen, 1789)"
 ]
}

 The dataset includes 1632 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008865-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15313374
title: Anhang zu WOKIE - FAIR in allen Sprachen: Ein automatisiertes LLM-gestütztes Übersetzungssystem für SKOS-Thesauri

description: Anhang zu WOKIE - FAIR in allen Sprachen: Ein automatisiertes, LLM-gestütztes Übersetzungssystem für SKOS-Thesauri, eingereicht für die Tagung FORGE25
description: Lizenzen:

DEFC: CC BY 4.0; Creators: Seta Štuhec, Anja Masur, Peter Andorfer, Ksenia Zaytseva, Edeltraud Aspöck

UNESCO (adapted): CC BY-SA 3.0; Creators: UNESCO
DOI: 10.5281/zenodo.15313375
title: Anhang zu WOKIE - FAIR in allen Sprachen: Ein automatisiertes LLM-gestütztes Übersetzungssystem für SKOS-Thesauri

description: Anhang zu WOKIE - FAIR in allen Sprachen: Ein automatisiertes, LLM-gestütztes Übersetzungssystem für SKOS-Thesauri, eingereicht für die Tagung FORGE25
description: Lizenzen:

DEFC: CC BY 4.0; Creators: Seta Štuhec, Anja Masur, Peter Andorfer, Ksenia Zaytseva, Edeltraud Aspöck

UNESCO (adapted): CC BY-SA 3.0; Creators: UNESCO
DOI: 10.15468/dl.c2auty
title: Occurrence Download

description: A dataset containing 8802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-2580.0",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anaxyrus woodhousii (Girard, 1854)",
 "Year 1960-2025"
 ]
}

 The dataset includes 8802 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008866-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uw5q3b
title: Occurrence Download

description: A dataset containing 8802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-2580.0",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anaxyrus woodhousii (Girard, 1854)",
 "Year 1960-2025"
 ]
}

 The dataset includes 8802 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008867-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwb57b
title: Occurrence Download

description: A dataset containing 8800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Diarsia brunnea (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 8800 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008868-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7p9emq
title: Occurrence Download

description: A dataset containing 1155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eledona agricola (Herbst, 1783)"
 ]
}

 The dataset includes 1155 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008870-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhk4gw
title: Occurrence Download

description: A dataset containing 54302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arachnida",
 "Year is 1991"
 ]
}

 The dataset includes 54302 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008863-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6253v
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Melanophora roralis (Linnaeus, 1758)"
 ]
}

 The dataset includes 209 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008871-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15313418
title: Arthropod abundance by feeding ecology group & riparian soil chemistry data

description: Data files in .csv format sufficient to recreate analysis from Duval et al. 2025 (Environmental Entomology)
DOI: 10.5281/zenodo.15313419
title: Arthropod abundance by feeding ecology group & riparian soil chemistry data

description: Data files in .csv format sufficient to recreate analysis from Duval et al. 2025 (Environmental Entomology)
DOI: 10.15468/dl.zp4gz4
title: Occurrence Download

description: A dataset containing 2003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Strigamia acuminata Leach, 1815"
 ]
}

 The dataset includes 2003 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008872-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtz3j8
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Polymixis lichenea Hübner, 1813"
 ]
}

 The dataset includes 344 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008874-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15298341
title: Learned KATMAP models

description: Models of splicing regulation learned from splicing factor (SF) perturbation RNA-seq experiments using KATMAP (Knockdown Activity and Target Models from Additive regression Predictions).



00_LearnedModels: Contains *.katmap files from the cassette exon models that can be used to score exons 



best_model_per_SF: These are the SF models we are most confident in. If a significant model was learned from more than one knockdown experiment, we select the model with the strongest evidence for splicing activity. 

models_for_both_cells: The significant SF models used in the manuscript. If we obtained a model from more than one cell type, both are included



01_ModelOutputs: Inference results for the significant models used in the analyses, as well as marginal models with significant activity maps but which did not significantly outperform a reduced model. Each subdirectory contains the models, posterior samples, summaries, target predictions, and visualizations. The *.katmap files in 00_LearnedModels are more lightweight representations of the cassette exon models, which can be used with the KATMAP python library 



00_CassetteExons: Models with significant activity maps learned from cassette exons

01_A3SS: Models with significant activity maps learned from alternative A3SS events

02_A5SS: Models with significant activity maps learned from alternative A5SS events



02_TargetPredictions: Tables of target predictions from the cassette exon models
DOI: 10.5281/zenodo.15298342
title: Learned KATMAP models

description: Models of splicing regulation learned from splicing factor (SF) perturbation RNA-seq experiments using KATMAP (Knockdown Activity and Target Models from Additive regression Predictions).



00_LearnedModels: Contains *.katmap files from the cassette exon models that can be used to score exons 



best_model_per_SF: These are the SF models we are most confident in. If a significant model was learned from more than one knockdown experiment, we select the model with the strongest evidence for splicing activity. 

models_for_both_cells: The significant SF models used in the manuscript. If we obtained a model from more than one cell type, both are included



01_ModelOutputs: Inference results for the significant models used in the analyses, as well as marginal models with significant activity maps but which did not significantly outperform a reduced model. Each subdirectory contains the models, posterior samples, summaries, target predictions, and visualizations. The *.katmap files in 00_LearnedModels are more lightweight representations of the cassette exon models, which can be used with the KATMAP python library 



00_CassetteExons: Models with significant activity maps learned from cassette exons

01_A3SS: Models with significant activity maps learned from alternative A3SS events

02_A5SS: Models with significant activity maps learned from alternative A5SS events



02_TargetPredictions: Tables of target predictions from the cassette exon models
DOI: 10.15468/dl.dm7bkf
title: Occurrence Download

description: A dataset containing 3237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Dolichovespula media (Retz., 1783)"
 ]
}

 The dataset includes 3237 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008875-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7266/p7g8rjx0
title: Delft3D Modeling Inputs & Outputs in the Houston-Galveston Bay Area
DOI: 10.15468/dl.3fdmy2
title: Occurrence Download

description: A dataset containing 3375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Furcula furcula (Clerck, 1759)"
 ]
}

 The dataset includes 3375 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008876-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2ps-79g-8mj
title: Rhynchonellata Williams, Carlson, Brunton, Holmer & Popov, 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h6j-s20-gtt
title: †Pterinopecten J. Hall, 1883

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4tm-vrm-q1b
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.zfd5nr
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arcuatula perfragilis",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017691-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/b2b-k73-1kr
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qwk-m8r-q71
title: †Heterastridium Reuss, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ev-pec-8y8
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w59-vh8-447
title: †Metalegoceras sundaicum (Haniel, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2lm-wcl-hj0
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kxh-xsa-89v
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/80q-xaz-t89
title: †Lepidocyclina (Nephrolepidina) vandervlerki Caudri, 1939

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wv7-22t-xn9
title: †Anasibirites multiformis Welter, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l52-fxw-2jd
title: Anatomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qcv-gbv-jgb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qy8-wvq-jpn
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sgj-f01-xd3
title: †Hypocladiscites subaratus (Mojsisovics, 1896)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ty4-el2-pnk
title: Halorites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/67p-d06-57d
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dmq-nwd-8ba
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e76-t3e-xaa
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.