cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19701685.v1
title: Modulation of cutaneous responses in CN data

description: Raw neural data for paper modulation of cutaneous responses in the cuneate nucleus of macaques during active movement
DOI: 10.5281/zenodo.6514191
title: An in situ observation dataset of soil hydraulic properties and soil moisture in a high and cold mountainous area on the northeastern Qinghai-Tibet Plateau

description: Based on soil profile data at depths of 5 cm and 25 cm from 238 sampling sites, and on soil data from 32 soil moisture monitoring stations at depths of 5 cm, 15 cm, 25 cm, 40 cm, and 60 cm, we have compiled a soil hydraulic properties and soil moisture dataset for a high and cold mountainous area, Northeastern Qinghai-Tibet Plateau. Specifically, the soil hydraulic properties include clay, silt, sand, soil organic carbon, soil saturated hydraulic conductivity, soil water retention curve parameters (Van Genuchten model) and soil dry bulk density.
DOI: 10.5281/zenodo.6514190
title: An in situ observation dataset of soil hydraulic properties and soil moisture in a high and cold mountainous area on the northeastern Qinghai-Tibet Plateau

description: Based on soil profile data at depths of 5 cm and 25 cm from 238 sampling sites, and on soil data from 32 soil moisture monitoring stations at depths of 5 cm, 15 cm, 25 cm, 40 cm, and 60 cm, we have compiled a soil hydraulic properties and soil moisture dataset for a high and cold mountainous area, Northeastern Qinghai-Tibet Plateau. Specifically, the soil hydraulic properties include clay, silt, sand, soil organic carbon, soil saturated hydraulic conductivity, soil water retention curve parameters (Van Genuchten model) and soil dry bulk density.
DOI: 10.25919/j99h-zq66
title: IAEA Robotics Challenge

description: Data collected during the 2017 IAEA Robotics Challenge at CSIRO QCAT Pinjarra Hills, Queensland, Australia 2017 November 20-24
DOI: 10.6084/m9.figshare.19701616
title: Old

description: Complete raw dataset
DOI: 10.6084/m9.figshare.19701616.v3
title: Old

description: Complete raw dataset
DOI: 10.6084/m9.figshare.19701616.v2
title: Modulation of cutaneous responses in the cuneate nucleus of macaques during active movement

description: Complete raw dataset for paper 'Modulation of cutaneous responses in the cuneate nucleus of macaques during active movement'
DOI: 10.6073/pasta/a75a50f8709307b18c07123737e2be9b
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-2. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-2 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/11a80be008f0a054172b7587bdc8bc1a
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-2. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-2 site. This is an ONGOING dataset.
DOI: 10.5281/zenodo.5888398
title: Virtual Learning Environment of the Brazilian Health System (AVASUS): Efficiency of Results, Impacts, and Contributions

description: <strong>Dataset name: </strong>survey_results.csv<strong> </strong> <strong>Version: </strong>1.0 <strong>Data collection period: </strong>11/16/2018-12/17/2018 <strong>Dataset Characteristics: </strong>Multivalued<strong> </strong> <strong>Number of Instances: </strong>720 <strong>Number of Attributes: </strong>45 <strong>Missing Values: </strong>Yes<strong> </strong> <strong>Area(s): </strong>Health and education <strong>Sources:</strong> <strong>Primary:</strong> Survey (Supplementary material). <strong>Secondary: </strong> Virtual Learning Environment of the Brazilian Health System [1]; Brazilian Occupational Classification (CBO) [2]; and National Registry of Health Care Facilities (CNES) [3]; <strong>Description: </strong>The dataset survey_results.csv comprises survey data from the following sources: AVASUS, CNES, CBO, and a questionnaire applied to 720 AVASUS course participants. The objective of this paper was to assess the impacts of the educational offerings on health services and AVASUS course participants' professional practice. A total of 720 AVASUS users enrolled in different courses answered the questionnaire. These data can be used for impact analysis in the Brazilian health system, especially those related to health training. Finally, the data dictionary is presented in Table 1. <strong>References</strong> [1] Brasil (2021a). Ambiente virtual de aprendizagem do sus - avasus. Home page Available from: https://avasus.ufrn.br/ . [2] Brasil (2021b). Classificação brasileira de ocupações - CBO. Available from: http://www.mtecbo.gov.br/cbosite/pages/home.jsf . [3] Brasil (2021c). Cadastro nacional de estabelecimentos de saúde - CNES. Available from: http://cnes.datasus.gov.br/ .
DOI: 10.6073/pasta/b83113db2fc7f97cfe21450c9eadd3d7
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-2 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/403693e7b6489ab8bb6978ef94b8d26f
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19633404.v6
title: Code snippet suggestions for exploratory programming - User study

description: This dataset contains participant notebooks, scripts for analysis, study instruments and pilot study results.
DOI: 10.18112/openneuro.ds004121.v1.0.0
title: BCIT Mind Wandering
DOI: 10.5066/p92xn5ow
title: Genetic and Habitat Data for Plantago ovata in the Mojave Desert

description: These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or imported into R statistical software (https://www.R-project.org/) using the adegenet package (Jombart and Ahmed 2011). The vcf file can be loaded into the Stacks population program (Catchen et al. 2013) to calculate genetic diversity statistics. The raster datasets represent the predicted suitability of habitat for Plantago ovata within the Mojave Desert mapping extent and the standard error among alternative habitat models. They can be viewed in any appropriate mapping software. Analyses used to create the habitat layer can be replicated with the accompanying R script. These data support the following publication: Shryock, D.F., Washburn, L.K., DeFalco, L.A. and Esque, T.C., 2021. Harnessing landscape genomics to identify future climate resilient genotypes in a desert annual. Molecular Ecology, 30(3), pp.698-717. https://doi.org/10.1111/mec.15672. References: Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A., &amp; Cresko, W. A., 2013. Stacks: An analysis tool set for population genomics., 22(11), 3124-3140. Jombart T. and Ahmed I., 2011. adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics. doi:10.1093/bioinformatics/btr521 Rousset, F., 2008. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources 8: 103-106.
DOI: 10.6073/pasta/2288e8585f5db0ab1ec6bed1367c08de
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-3 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/0eedbc4fdcc822e947b1ac04d97c19f7
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-3 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.17632/x62kt53nnr.1
title: Synthetic 2D Gel Electrophoresis protein spot images

description: Dataset (test set) of synthetic 2D Gel Electrophoresis protein spot images. The intended use of the dataset is the development of protein spot models.

Dataset contains:
im_Input_v1_1 – Input image, without secondary spots, with intensity scaling and added constant background
im_Input_v1_2 – Input image, without secondary spots, with intensity scaling and added constant background, and added Gaussian noise
im_Input_v1_3 – Input image, without secondary spots, with intensity scaling and added constant background, and added varying background distortions, but without Gaussian noise
im_Input_v2_1 – Input image, with secondary spots, with intensity scaling and added constant background
im_Input_v2_2 – Input image, with secondary spots, with intensity scaling and added constant background, and added Gaussian noise
im_Input_v2_3 – Input image, with secondary spots, with intensity scaling and added constant background, and added varying background distortions, but without Gaussian noise

im_Target_1 – Ground truth image (with intensity scaling and without background)
im_Target_2 – Ground truth image (with intensity scaling and with constant background)

im_Mask_1 – mask for the im_Input_v1_x input images (input images are without secondary spots so the mask covers entire image patch)
im_Mask_2 – mask for the im_Input_v2_x input images (mask shows region of the primary spot)
DOI: 10.17632/wk3yz9kc4x.1
title: AmpliSeq - Breast Cancer Cell Panel

description: Cell culture for the purposes of extracellular vesicle (EV) production requires reducing or removing the presence of FBS in the culture medium. This is because FBS is itself a rich source of EVs, which are physically indistinguishable from those produced by the cultured cells. Two alternate approaches have emerged to address this. The first is to culture cells in a complete FBS-supplemented medium, then incubate for a short period of time (~ 24 hours) in a serum free medium from which EVs may be isolated. The second is to supplement cells with FBS depleted of bovine EVs by overnight ultracentrifugation. It is well-known that serum deprivation impacts cell characteristics, but to date, no such study had sought to examine the effects of this in the EV production context. This study aimed to address this by conducting whole transcriptomic targeted sequencing (AmpliSeq) analysis of a panel of breast cancer cells cultured under EV production conditions.  Specifically, eight cell lines (n=3 each)  were cultured in complete medium (>10% FBS), a defined low serum medium with 1% EV-depleted FBS (Low Serum Medium) or cells cultured in complete medium then deprived of serum for 24 hours prior to collection (serum starvation).  We hypothesised that serum deprivation would induce transcriptomic alterations to the cells, and that the specific nature of the gene expression changes would vary depending on patterns of ER, PR and HER2 expression. The data supported the hypothesis with differential expression analysis suggesting that distinct sets of genes were up- and down- regulated in ER+, HER2+ and triple negative breast cancer (TNBC) cells under each condition. The data also suggested that distinct sets of genes were modulated by the two methods of EV production. Importantly, however, the analysis verified that these transcriptomic changes did not appear to alter disease-relevant characteristics, with cells retaining their phenotypic traits regardless of culture method. This study provides an important validation of two commonly used methods for in vitro EV production.
DOI: 10.17632/sk9jvz98vw.1
title: Data for: Finding a home for the ram’s horn squid: phylogenomic analyses support Spirula spirula as a close relative of Oegopsida

description: This data package includes concatenated data matrices, pipeline scripts and phylogenetic trees used/described in the manuscript "Finding a home for the ram’s horn squid: phylogenomic analyses support Spirula spirula as a close relative of Oegopsida".
DOI: 10.6084/m9.figshare.19633404.v7
title: Code snippet suggestions for exploratory programming - User study

description: This dataset contains participant notebooks, scripts for analysis, study instruments and pilot study results.
DOI: 10.6073/pasta/eb34ac191ccccdd804d2266bec68dbf3
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-3. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-3 site. This is an ONGOING dataset.
DOI: 10.5281/zenodo.6516042
title: Deep learning for ecology and evolution

description: Supplementary table with references on deep learning in ecology and evolution. Includes reference information with URLs and abstracts.
DOI: 10.6073/pasta/a2fd24f4103a94a0f1b9c97aa6655043
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-3. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-3 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/7ca880b28d9ba446bd06f2b6468ca381
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 3 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-3 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/52dd233f05144021c720c33fdeca7f65
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6073/pasta/ab36e450e46f93d2c93e0bf713eed9c8
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-4 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.