cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1275010.09fu
title: SH1275010.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275011.09fu
title: SH1275011.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275012.09fu
title: SH1275012.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275013.09fu
title: SH1275013.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275014.09fu
title: SH1275014.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275015.09fu
title: SH1275015.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275016.09fu
title: SH1275016.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275017.09fu
title: SH1275017.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1275018.09fu
title: SH1275018.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.21648057
title: Solitary and semisocial behaviour in the <i>Corynura</i> group: new findings in a clade sister to all other Augochlorini bees (Hymenoptera: Halictidae)

description: The great diversity of social organisation present in the tribe Augochlorini makes these bees prime candidates from which to study the evolution of social behaviour. The <i>Corynura</i> group, sister to all other augochlorines, is comprised by three southern South American genera: <i>Callistochlora, Corynura</i> and <i>Halictillus</i>. The nest architecture and social behaviour of <i>Ca. aureoviridis, Co. ampliata, Co. bruchiana, Co. nahuelita, H. amplilobus</i> and <i>H. reticulatus</i> were studied in Argentina. Conclusive evidence of solitary and semisocial behaviour were found in a group where only communal behaviour had been confirmed. Two species presented socially polymorphic populations. Previous studies are reviewed and all data analysed considering species’ flying periods. The possibility of eusocial behaviour is briefly discussed considering environmental factors. Since some of the species visit crops, these results are useful to develop techniques to manage native bees for pollination.
DOI: 10.6084/m9.figshare.21648057.v1
title: Solitary and semisocial behaviour in the <i>Corynura</i> group: new findings in a clade sister to all other Augochlorini bees (Hymenoptera: Halictidae)

description: The great diversity of social organisation present in the tribe Augochlorini makes these bees prime candidates from which to study the evolution of social behaviour. The <i>Corynura</i> group, sister to all other augochlorines, is comprised by three southern South American genera: <i>Callistochlora, Corynura</i> and <i>Halictillus</i>. The nest architecture and social behaviour of <i>Ca. aureoviridis, Co. ampliata, Co. bruchiana, Co. nahuelita, H. amplilobus</i> and <i>H. reticulatus</i> were studied in Argentina. Conclusive evidence of solitary and semisocial behaviour were found in a group where only communal behaviour had been confirmed. Two species presented socially polymorphic populations. Previous studies are reviewed and all data analysed considering species’ flying periods. The possibility of eusocial behaviour is briefly discussed considering environmental factors. Since some of the species visit crops, these results are useful to develop techniques to manage native bees for pollination.
DOI: 10.6084/m9.figshare.21954369
title: Nesting behavior of the Chestnut-crowned Gnateater, <i>Conopophaga castaneiceps</i> (Aves: Conopophagidae)

description: The chestnut-crowned gnateater (<i>Conopophaga castaneiceps</i>) inhabits the Andean mountains, from Colombia to Peru, between 500 and 2000 m. Our study provides new information on the nesting biology of <i>C. castaneiceps</i>; specifically, we describe hitherto unknown aspects such as eggs, nestling development, incubation and feeding behaviours. Three nests were monitored during two breeding seasons (2014–2015) in Tatamá National Park, Risaralda, Colombia. Cup nests contained a clutch of two creamy eggs with reddish dots scattered throughout the shell. On average, the parents incubated 58% of their time, with similar duration of the off- (77 ± 48.2 min) and on-bouts (73 ± 41.7 min). A few days before nestlings abandoned the nest (11–12-day-old nestlings), parents conducted 6.8 ± 1.6 feeding trips per hour (N = 25 hours) during the daytime. Based on one nest, the nestling period lasted 17 days, with a growth rate (<i>K</i>) of 0.4. The female had a higher investment during the nestling period, more brooding (t<sub>10</sub> = 106.48, <i>P</i> &lt; .001) and more feeding trips (t<sub>10</sub> = 7.69, <i>P</i> &lt; .001) compared to the male. Both parents conducted night brooding. Our study shows that nesting traits are conserved among <i>Conopophaga</i> species. Our novel information on nestling growth, incubation and feeding behaviour for <i>C. castaneiceps</i> advances our understanding of the gnateater’s poorly known nesting biology and will be key for future comparative studies.
DOI: 10.6084/m9.figshare.21954369.v2
title: Nesting behavior of the Chestnut-crowned Gnateater, <i>Conopophaga castaneiceps</i> (Aves: Conopophagidae)

description: The chestnut-crowned gnateater (<i>Conopophaga castaneiceps</i>) inhabits the Andean mountains, from Colombia to Peru, between 500 and 2000 m. Our study provides new information on the nesting biology of <i>C. castaneiceps</i>; specifically, we describe hitherto unknown aspects such as eggs, nestling development, incubation and feeding behaviours. Three nests were monitored during two breeding seasons (2014–2015) in Tatamá National Park, Risaralda, Colombia. Cup nests contained a clutch of two creamy eggs with reddish dots scattered throughout the shell. On average, the parents incubated 58% of their time, with similar duration of the off- (77 ± 48.2 min) and on-bouts (73 ± 41.7 min). A few days before nestlings abandoned the nest (11–12-day-old nestlings), parents conducted 6.8 ± 1.6 feeding trips per hour (N = 25 hours) during the daytime. Based on one nest, the nestling period lasted 17 days, with a growth rate (<i>K</i>) of 0.4. The female had a higher investment during the nestling period, more brooding (t<sub>10</sub> = 106.48, <i>P</i> &lt; .001) and more feeding trips (t<sub>10</sub> = 7.69, <i>P</i> &lt; .001) compared to the male. Both parents conducted night brooding. Our study shows that nesting traits are conserved among <i>Conopophaga</i> species. Our novel information on nestling growth, incubation and feeding behaviour for <i>C. castaneiceps</i> advances our understanding of the gnateater’s poorly known nesting biology and will be key for future comparative studies.
DOI: 10.6084/m9.figshare.21954369.v1
title: Nesting behavior of the Chestnut-crowned Gnateater (<i>Conopophaga castaneiceps</i>)

description: The chestnut-crowned gnateater (<i>Conopophaga castaneiceps</i>) inhabits the Andean mountains, from Colombia to Peru, between 500 and 2000 m. Our study provides new information on the nesting biology of <i>C. castaneiceps</i>; specifically, we describe hitherto unknown aspects such as eggs, nestling development, incubation and feeding behaviours. Three nests were monitored during two breeding seasons (2014–2015) in Tatamá National Park, Risaralda, Colombia. Cup nests contained a clutch of two creamy eggs with reddish dots scattered throughout the shell. On average, the parents incubated 58% of their time, with similar duration of the off- (77 ± 48.2 min) and on-bouts (73 ± 41.7 min). A few days before nestlings abandoned the nest (11–12-day-old nestlings), parents conducted 6.8 ± 1.6 feeding trips per hour (N = 25 hours) during the daytime. Based on one nest, the nestling period lasted 17 days, with a growth rate (<i>K</i>) of 0.4. The female had a higher investment during the nestling period, more brooding (t<sub>10</sub> = 106.48, <i>P</i> &lt; .001) and more feeding trips (t<sub>10</sub> = 7.69, <i>P</i> &lt; .001) compared to the male. Both parents conducted night brooding. Our study shows that nesting traits are conserved among <i>Conopophaga</i> species. Our novel information on nestling growth, incubation and feeding behaviour for <i>C. castaneiceps</i> advances our understanding of the gnateater’s poorly known nesting biology and will be key for future comparative studies.
DOI: 10.5281/zenodo.7841983
title: Clinically used broad-spectrum antibiotics compromise inflammatory monocyte-dependent antibacterial defense in the lung

description: Code and data for the preprint "Clinically used broad-spectrum antibiotics compromise inflammatory monocyte-dependent antibacterial defense in the lung". <strong>Metagenomic analysis</strong> - uses `targets` (workflow manager) and `renv` (environment manager) R packages. - calling `targets::tar_make()`, once the environment is configured using renv and a separate project has been created (with the exact file structure including the data), should run the entire pipeline, creating a _targets folder with all the .rds files - independent objects can be explored using `targets::tar_load(obj)` or `targets::tar_read(plot)` Targets user manual for more information. Preprocessing/QC scripts can be provided upon reasonable request.
DOI: 10.5281/zenodo.7841982
title: Clinically used broad-spectrum antibiotics compromise inflammatory monocyte-dependent antibacterial defense in the lung

description: Code and data for the preprint "Clinically used broad-spectrum antibiotics compromise inflammatory monocyte-dependent antibacterial defense in the lung". <strong>Metagenomic analysis</strong> - uses `targets` (workflow manager) and `renv` (environment manager) R packages. - calling `targets::tar_make()`, once the environment is configured using renv and a separate project has been created (with the exact file structure including the data), should run the entire pipeline, creating a _targets folder with all the .rds files - independent objects can be explored using `targets::tar_load(obj)` or `targets::tar_read(plot)` Targets user manual for more information. Preprocessing/QC scripts can be provided upon reasonable request.
DOI: 10.5281/zenodo.7844960
title: How do young identify plants? Using the drawing method to explore early ethnobotanical knowledge in Madagascar

description: Database from the article "How do young identify plants? Using the drawing method to explore early ethnobotanical knowledge in Madagascar" Please contact the author before using it for more details.
DOI: 10.5281/zenodo.7844959
title: How do young identify plants? Using the drawing method to explore early ethnobotanical knowledge in Madagascar

description: Database from the article "How do young identify plants? Using the drawing method to explore early ethnobotanical knowledge in Madagascar" Please contact the author before using it for more details.
DOI: 10.6084/m9.figshare.22656919
title: Endophytic microbiome in pine plants

description: Here we conducted a broad-scale sampling across China to investigate the endophytic bacterial and fungal communities associated with four compartments (e.g., leaf, branch, stem, and root) of both healthy and nematode-infected pine plants. The file '16s' includes the 16S rRNA gene sequences of each sample, and the file 'ITS sequences' includes the internal transcribed spacer (ITS) sequences of each sample.
DOI: 10.6084/m9.figshare.22656919.v1
title: Endophytic microbiome in pine plants

description: Here we conducted a broad-scale sampling across China to investigate the endophytic bacterial and fungal communities associated with four compartments (e.g., leaf, branch, stem, and root) of both healthy and nematode-infected pine plants. The file '16s' includes the 16S rRNA gene sequences of each sample, and the file 'ITS sequences' includes the internal transcribed spacer (ITS) sequences of each sample.
DOI: 10.57841/casdc.0000494
title: 原位电子全息技术用于表征电极和固态电解质界面中的锂离子积累
DOI: 10.57841/casdc.0000496
title: 钙钛矿-钙铁石异质结构中的SrCoO3-δ微结构
DOI: 10.57841/casdc.0000497
title: 反位缺陷密度对单层六方氮化硼的晶体和电子结构的影响
DOI: 10.57841/casdc.0000498
title: La0.67Sr0.33MnO3薄膜中由轨道占用状态诱发的磁各向异性
DOI: 10.34740/kaggle/ds/2203337
title: Reliability of High-Power LEDs and Solder Pastes
DOI: 10.57841/casdc.0000499
title: 以掺有CoFeB的钨为自旋电流源的Y型磁隧道结
DOI: 10.57841/casdc.0000500
title: Sr3Ir2O7的相多态性和畴结构
DOI: 10.5281/zenodo.5831792
title: Transprecision Computing (Micro-benchmarks)

description: The micro-benchmarks involve multiple Floating-Point variables whose precision, that is the number of bits used for the mantissa and the exponent, can be tuned using the FlexFloat SW library (see "A Transprecision Floating-Point Platform for Ultra-Low Power Computing", by G. Tagliavini et al., in 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE) 2018 Mar 19 (pp. 1051-1056). IEEE). The data set comprises 7 different micro-benchmarks run under different precision configurations; this data set was created during the 2020 FET project OPRECOMP (g.a. 732631). The data set is fully described in the research paper: "Combining learning and optimization for transprecision computing", by authors Borghesi A, Tagliavini G, Lombardi M, Benini L, Milano M. In Proceedings of the 17th ACM International Conference on Computing Frontiers 2020 May 11 (pp. 10-18). See here the full paper: https://arxiv.org/pdf/2002.10890.pdf
DOI: 10.5281/zenodo.5831793
title: Transprecision Computing (Micro-benchmarks)

description: The micro-benchmarks involve multiple Floating-Point variables whose precision, that is the number of bits used for the mantissa and the exponent, can be tuned using the FlexFloat SW library (see "A Transprecision Floating-Point Platform for Ultra-Low Power Computing", by G. Tagliavini et al., in 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE) 2018 Mar 19 (pp. 1051-1056). IEEE). The data set comprises 7 different micro-benchmarks run under different precision configurations; this data set was created during the 2020 FET project OPRECOMP (g.a. 732631). The data set is fully described in the research paper: "Combining learning and optimization for transprecision computing", by authors Borghesi A, Tagliavini G, Lombardi M, Benini L, Milano M. In Proceedings of the 17th ACM International Conference on Computing Frontiers 2020 May 11 (pp. 10-18). See here the full paper: https://arxiv.org/pdf/2002.10890.pdf
DOI: 10.57841/casdc.0000501
title: 结构调制对稀薄磁性半导体Li1+yZn0.9Mn0.1As1.0中磁性能的影响
DOI: 10.57841/casdc.0000502
title: 层间Dzyaloshinskii-Moriya相互作用促成的无场自旋-轨道力矩转换
DOI: 10.57841/casdc.0000503
title: 磁性三层中有效垂直场辅助下的高效自旋-轨道-扭矩转换