cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h9w0vt4d6
title: Data from: Survey completeness of a global citizen-science database of bird occurrence

description: Measuring the completeness of survey inventories created by
 citizen-science initiatives can identify the strengths and shortfalls in
 our knowledge of where species occur geographically. Here, we use
 occurrence information from eBird to measure the survey completeness of
 the world’s birds in this database at three temporal resolutions and four
 spatial resolutions across the annual cycle during the period 2002 to
 2018. Approximately 84% of the earth’s terrestrial surface contained bird
 occurrence information with the greatest concentrations occurring in North
 America, Europe, India, Australia, and New Zealand. The largest regions
 with low levels of survey completeness were located in central South
 America, northern and central Africa, and northern Asia. Across spatial
 and temporal resolutions, survey completeness in regions with occurrence
 information was 55–74% on average, with the highest values occurring at
 coarser temporal and coarser spatial resolutions and during spring
 migration within temperate and boreal regions. Across spatial and temporal
 resolutions, survey completeness exceeded 90% within ca. 4–14% of the
 earth’s terrestrial surface. Survey completeness increased globally from
 2002 to 2018 across all months of the year at a rate of ca. 3% per year.
 The slowest gains occurred in Africa and in montane regions, and the most
 rapid gains occurred in India and in tropical forests after 2012. Thus,
 occurrence information from a global citizen-science program for a
 charismatic and well-studied taxon was geographically broad but contained
 heterogeneous patterns of survey completeness that were strongly
 influenced by temporal and especially spatial resolution. Our results
 identify regions where the application of additional effort would address
 current knowledge shortfalls, and regions where the maintenance of
 existing effort would benefit long-term monitoring efforts. Our findings
 highlight the potential of citizen science initiatives to further our
 knowledge of where species occur across space and time, information whose
 applications under global change will likely increase.
DOI: 10.5061/dryad.bk3j9kd6f
title: Data from: Integrating over uncertainty in spatial scale of response within multispecies occupancy models yields more accurate assessments of community composition

description: Species abundance and community composition are affected not only by the
 local environment, but also by broader landscape and regional context.
 Yet, determining the spatial scales at which landscapes affect species
 remains a persistent challenge, hindering our ability to understand how
 environmental gradients shape communities. This problem is amplified by
 data deficient species and imperfect species detection. Here, we present a
 Bayesian framework that allows uncertainty surrounding the “true” spatial
 scale of species’ responses (i.e., changes in presence/absence) to be
 integrated directly into a community hierarchical model. This
 scale-selecting multi-species occupancy model (ssMSOM) estimates the scale
 of response, and shows high accuracy and correct levels of uncertainty in
 parameter estimates across a broad range of simulation conditions. An
 ssMSOM can be run in a matter of minutes, as opposed to the many hours
 required to run normal multi-species occupancy models at all queried
 spatial scales, and then conduct model selection—a problem that up to now
 has prohibited scale of response from being rigorously evaluated in an
 occupancy framework. Alternatives to the ssMSOM, such as GLM based
 approaches frequently fail to detect the correct spatial scale and
 magnitude of response, and are often falsely confident by favoring the
 incorrect parameter estimates, especially as species’ detection
 probabilities deviate from perfect. We further show how trait information
 can be leveraged to understand how individual species’ scales of response
 vary within communities. Integrating spatial scale selection directly into
 hierarchical community models provides a means of formally testing
 hypotheses regarding spatial scales of response, and more accurately
 determining the environmental drivers that shape communities.
DOI: 10.5061/dryad.h18931zfq
title: Data from: Intra-Rater reliability and validity of outcome measures in Myotonic Dystrophy Type 1

description: Objective To investigate intra-rater reliability, concurrent- and
 construct validity of muscle strength, balance, and functional mobility
 measures in individuals with non-congenital DM1. Methods Seventy-eight
 adults with non-congenital DM1 participated in visit 1 and 73 of the
 subjects participated in visit 2 separated by 1-2 weeks. The assessments
 consisted of muscle strength tests with Hand-Held Dynamometry (HHD) and
 Stationary Dynamometry in the lower limb. The balance tests comprised of
 Step Test, Timed Up and Go test, Feet-Together stance, Tandem-Stance,
 One-Leg-Stance, and modified Clinical Test of Sensory Integration and
 Balance on a balance platform. The functional mobility tests consisted of
 the 10-meter Walk Test (10mWT) and 10-times Sit-To-Stand test. Results The
 HHD and Stationary Dynamometry were sufficiently intra-rater reliable for
 most muscle groups on a group- (SEM%≤15%) and individual level
 (MDD95%≤30%), but HHD was most reliable. Stationary Dynamometry measured a
 higher torque than HHD for all extensor muscles, but for single
 individuals none of the devices were favored. Overall, intra-rater
 reliability and validity were only sufficient for the dynamic balance
 tests and not the static balance tests. Both functional mobility tests
 were sufficiently reliable and valid, but the 10mWT was most reliable.
 Conclusion Overall, HHD is recommended as a reliable and valid tool for
 single individuals and for flexor muscles on a group level. For balance
 assessments, the dynamic balance tests are recommended as the most valid
 and reliable balance tests. Both functional mobility tests are recommended
 for valid and reliable outcomes, but the 10mWT was superior for
 reliability.
DOI: 10.5061/dryad.0zpc866t7
title: Stress: better coping associated with lower tau in amyloid positive cognitively unimpaired older adults

description: Objective: Research in animals has shown that chronic stress exacerbates
 tau pathology. In humans, psychological stress has been associated with
 higher risk of Alzheimer’s disease (AD) clinical syndrome. The objective
 of this cross-sectional study was to assess the hypothesis that stress
 coping ability (assessed via the “Brief Resilience Scale” [BRS]) is
 associated with tau burden and to evaluate whether these associations
 differed by sex and amyloid status (A+/A-) in cognitively unimpaired older
 adults (CU). Methods: We included 225 CU participants (mean age:
 70.4±10.2, 48% females) enrolled in the population-based Mayo Clinic Study
 of Aging who completed the BRS and underwent amyloid-PET (PIB-PET) and
 tau-PET (AV1451-PET). We fitted multiple regression and ANCOVA models to
 assess the associations between BRS and tau-PET and the interaction with
 amyloid status and sex. We focused on entorhinal cortex (ERC) tau burden,
 and also performed voxel-wise analyses. Age, sex, education, depression
 and anxiety were considered as covariates. Results: Higher stress coping
 ability was associated with lower tau burden in the medial temporal lobe
 (including ERC), occipito-temporal and cuneal/precuneal cortices. The
 association was present in both A+ and A- but weaker in A- CU older
 adults. There was an interaction between amyloid status and stress coping
 ability that was restricted to the medial temporal lobe tau such that A+
 CU older adults with lower stress coping abilities showed higher tau.
 There were no significant interactions between stress coping and sex.
 Conclusions: A faster termination of the stress response (higher coping
 ability) may limit the negative effects of stress on tau
 deposition.  Conversely, lower stress coping ability may be an
 early sign of accumulating tau pathology. Longitudinal studies are
 warranted to clarify whether stress mechanisms act to exacerbate tau
 pathology or tau influences stress-related brain mechanisms and lowers the
 ability to cope with stress.
DOI: 10.5061/dryad.t4b8gthx8
title: The phylogeny of early amniotes and the affinities of Parareptilia and Varanopidae

description: Amniotes include mammals, reptiles and birds, representing 75% of extant
 vertebrate species on land. They originated around 318 million years ago
 (early late Carboniferous)and their early fossil record is central to
 understanding the expansion of vertebrates in terrestrial ecosystems. We
 present a new phylogenetic hypothesis that challenges the widely-accepted
 consensus about early amniote evolution, based on parsimony analysis and
 Bayesian inference of a new morphological dataset. We find a reduced
 membership of the mammalian stem-lineage, which excludes varanopids. This
 implies that evolutionary turnover of the mammalian stem-lineage during
 the early/middle Permian transition (273 Ma) was more
 abrupt than has previously been recognised. We also find
 that Parareptilia are nested within Diapsida. This suggests that temporal
 fenestration, a key structural innovation with important functional
 implications, evolved fewer times than generally thought, but showed
 highly variable morphology among early reptiles after its initial origin.
 Our phylogeny also addresses controversiesover the affinities of
 mesosaurids, the earliest known aquatic amniotes,which we recover as
 early-diverging parareptiles.
DOI: 10.5281/zenodo.18393584
title: Heterogeneity in adaptive capacity determines landing stability in small-scale fisheries

description: This repository contains curated datasets, metadata, and reproducible R scripts supporting a manuscript on ecological stability, biogeographic structure, and socio-ecological adaptive capacity in Chilean small-scale fisheries (2015–2022). The analyses are based on administrative landings records from the Chilean National Fisheries Service (SERNAPESCA), filtered to benthic species harvested by small-scale vessels operating in nearshore coastal systems.

The dataset includes anonymized vessel-level landings, derived fishing effort metrics, and municipality-level socio-ecological variables grouped into five adaptive capacity dimensions (Agency, Assets, Flexibility, Learning, Social organization), together with all R scripts required to reproduce the analyses.
DOI: 10.5281/zenodo.18393585
title: Heterogeneity in adaptive capacity determines landing stability in small-scale fisheries

description: This repository contains curated datasets, metadata, and reproducible R scripts supporting a manuscript on ecological stability, biogeographic structure, and socio-ecological adaptive capacity in Chilean small-scale fisheries (2015–2022). The analyses are based on administrative landings records from the Chilean National Fisheries Service (SERNAPESCA), filtered to benthic species harvested by small-scale vessels operating in nearshore coastal systems.

The dataset includes anonymized vessel-level landings, derived fishing effort metrics, and municipality-level socio-ecological variables grouped into five adaptive capacity dimensions (Agency, Assets, Flexibility, Learning, Social organization), together with all R scripts required to reproduce the analyses.
DOI: 10.5061/dryad.51c59zw4c
title: Data from: Filling a gap in the proboscidean fossil record: a new genus from the Lutetian of Senegal

description: A long hiatus encompassing most of the Eocene (end of the Ypresian to the
 early Priabonian) breaks up the proboscidean evolutionary history, which
 is otherwise documented by a rich fossil record. Only two post Ypresian
 localities from West Africa (Mali and Senegal) yielded scarce
 Moeritherium-like dental remains. Here, we study one of these remains from
 Senegal and name a new genus, Saloumia. This taxon, confidently
 mid-Lutetian in age, evokes Moeritherium and elephantifoms in view of its
 wrinkled enamel, the lack of centrocrista, and its strong lingual
 cingulum. However, due to its pronounced bunodonty, which departs from the
 bunolophodonty of both Moeritherium and elephantifoms, we cannot exclude
 that Saloumia documents an early experiment in dental diversity among
 Paleocene-Eocene proboscideans, without direct relationships with later
 proboscideans.
DOI: 10.5061/dryad.jh9w0vt6j
title: A new species of Eogruidae (Aves: Gruiformes) from the Miocene of the Linxia Basin, Gansu, China: Evolutionary and climatic implications

description: Despite having one of the most robust fossil records within core-gruiform
 birds (rails, cranes, and allies), the biogeographic history of Gruidae
 (cranes) and key drivers of diversification within this group remain
 largely unknown. The Eogruidae of Eurasia represent some of the earliest
 known crane-like fossils. Here, we present description of a new species
 represented by a well-preserved specimen of a foot from the late Miocene
 (7–6.5 mya) Liushu Formation of Linxia Basin, Gansu, China. It is the only
 eogruid fossil that has been found in this formation and is the first
 eogruid known from northwest China. Linxia Basin is located along the
 margin of the northeastern Tibetan Plateau, which allows for new insight
 into Miocene dispersal of the Eogruidae and potential climatological and
 geological connections. It is also the first specimen with an associated
 tarsometatarsus and nearly complete phalanges, including a claw, which
 provides further morphological information on this taxon. Referral of the
 new specimen to Eogruidae is based on extreme reduction of the trochlea of
 metatarsal II, which is most similar to the condition present in the
 eogruid subclade traditionally termed Ergilornithidae.
description: The specimen was scanned using x-ray microtomography (225 Micro CT) at the Key Laboratory of Vertebrate Evolution and Human Origins. The specimen is housed in the collections of the Institute of Vertebrate Paleontology and Paleoanthropology, Beijing, China. The raw data has been uploaded as TIFFs. The data has been segmented in Aviso and these segments are available as .stl files. .avi movies of the CT Data are also available.
description: The voxel size needs to be set to 0.16 across the x, y and z
 axes.
DOI: 10.5061/dryad.q573n5tdt
title: Data from: The genomic basis for short-term evolution of environmental adaptation in maize

description: Quality control genotype data (45,718 variant sites) for samples
 from Hallauer's Tusón. Tab delimited file. A header row is included.
 The first column ("label") lists sample names, the second column
 ("popdata") lists the generation to which each
 sample belongs, and the remaining columns correspond to the
 genotype data. Unphased diploid genotype calls are recorded in
 the following format: 1/1. Variant encoding: 1=A, 2=C, 3=G, 4=T,
 5=deletion, 6=insertion (5 and 6 are used for the ZmCCT10_CACTA locus).
 Missing genotype calls are encoded as NA. Data preview: 
 label    popdata  
  PZE.101000060    PZE.101000088
 C0_062314_002    0  
  2/1    NA
 C0_062314_003    0  
  2/2    3/3
DOI: 10.5061/dryad.2fqz612k0
title: Data from: A global meta-analyses of the response of multi-taxa diversity to grazing intensity in grasslands

description: Livestock grazing is an important component and driver of biodiversity in
 grassland ecosystems. While numerous studies and a few meta-analyses had
 been conducted on the response of single taxon diversity to grazing in
 grasslands, a synthesis of how multi-taxa diversity is affected has been
 largely missing, especially reflecting its changes along a grazing
 intensity gradient. We performed a comprehensive meta-analyses of 116
 published studies on the species richness (SR) and Shannon-Wiener index
 (H’) of plants, arthropods, and microbes to examine the response of
 biodiversity to grazing intensity in temperate grasslands globally. This
 quantitative assessment showed that the response of SR and H’ to grazing
 intensity agreed with the intermediate disturbance hypothesis in
 grasslands; SR and H’ increased with light and moderate grazing
 intensities, while they decreased at heavy intensity. In addition, plant
 SR increased markedly with light and moderate grazing and declined with
 heavy grazing intensity; however, H’ increased at light intensity and
 declined at moderate and heavy intensities. Moreover, the SR and H’ of
 microbes were enhanced at light and moderate grazing and were
 significantly reduced with heavy intensity. The SR and H’ of arthropods
 monotonously declined with increasing grazing intensity. Importantly,
 structural equation modelling showed that grazing resulted in enhanced
 plant SR mainly through its negative effects on plant biomass. Grazing had
 negative effects on plant coverage and arthropod abundance so that
 arthropod SR declined with increased grazing intensity. Moreover,
 increased grazing intensity caused an increase in soil pH, decrease in
 soil moisture, and then a decrease in microbe SR. Our findings confirm
 that different taxa exhibit diverse responses to changes in grazing
 intensity, and the way that grazing intensity affects diversity also
 varied with different taxa. We strongly recommend considering the
 requirements of multi-taxa diversity when applying grazing management and
 including arthropods and microbes in monitoring schemes.
DOI: 10.15468/dl.w6drhh
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coenopoeus palmeri"
 ]
}

 The dataset includes 372 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001946-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.kkwh70s18
title: Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses

description: Sampling reservoir hosts over time and space is critical to detect
 epizootics, predict spillover and design interventions. However, because
 sampling is logistically difficult and expensive, researchers rarely
 perform spatio-temporal sampling of many reservoir hosts. Bats are
 reservoirs of many virulent zoonotic pathogens such as filoviruses and
 henipaviruses, yet the highly mobile nature of these animals has limited
 optimal sampling of bat populations. To quantify the frequency of temporal
 sampling and to characterize the geographical scope of bat virus research,
 we here collated data on filovirus and henipavirus prevalence and
 seroprevalence in wild bats. We used a phylogenetically controlled
 meta-analysis to next assess temporal and spatial variation in bat virus
 detection estimates. Our analysis shows that only one in four bat virus
 studies report data longitudinally, that sampling efforts cluster
 geographically (e.g. filovirus data are available across much of Africa
 and Asia but are absent from Latin America and Oceania), and that sampling
 designs and reporting practices may affect some viral detection estimates
 (e.g. filovirus seroprevalence). Within the limited number of longitudinal
 bat virus studies, we observed high heterogeneity in viral detection
 estimates that in turn reflected both spatial and temporal variation. This
 suggests that spatio-temporal sampling designs are important to understand
 how zoonotic viruses are maintained and spread within and across wild bat
 populations, which in turn could help predict and preempt risks of
 zoonotic viral spillover.
DOI: 10.5061/dryad.0cfxpnvx6
title: Data from: Metabarcoding reveals diet diversity in an ungulate community in Thailand

description: Asian dry forests contain diverse and abundant large herbivore communities
 whose diet breadth is largely unstudied. We examined the diet composition
 of eight ungulate species in a dry tropical forest using metabarcoding to
 determine if the diet separation of the diverse community was structured
 and if and obvious attributes (i.e. body size, phylogeny or ecology) can
 explain the structure. We collected fecal samples from the ungulates in
 Huai Kha Khaeng Wildlife Sanctuary in the western forest complex of
 Thailand. The fecal collections occurred around a Large Forest Tree Plot
 (ForestGeo) where all woody species were codified within a genetic barcode
 library and used in this study. This DNA library was supplemented with
 samples from forb and grass species known to be consumed by ungulates in
 the region. Of 333 plant species tested, at least 92 were found within the
 fecal samples of the ungulates tested. Over half of the identified species
 were not previously identified by experts as forage species. All ungulate
 species showed a strong consumption of grasses and forbs. The pattern of
 forage consumption by these species did not consistently cluster according
 to obvious paradigms of body size or taxonomy, with significant
 differences found in diet selection of two similar-sized bovids (guar and
 banteng), and with the diet of sambar being more similar to bovids than to
 the other deer species in the community. We conclude Asian ungulate
 communities do differentiate in their forage consumption  and
 that metabarcoding techniques should allow for testing of diet shifts in
 response to seasonal rains and fires which dominate the phenology of Asian
 dry forests.
DOI: 10.5061/dryad.w0vt4b8m5
title: When weight is an encumberance: avoidance of stairs by different demographic groups

description: These data sets are for observational coding of stair choice and
 demographics at workplaces and an outdoor site when the alternative method
 of negotiation was lifts.  Two further data sets coded choice
 when the alternative to stairs was a sloped ramp. 
description: Observations and logistic regression
description: <strong>WorkplaceObservationsforPlosOne.xls</strong> Location: Coding number for the different workplaces UP1: Coding for direction of travel, Up = 1, Down = 0 FLOORS: The number of floors in the building LIFTS: The number of lifts in the building LIFT0STAIRS1: Coded 1 for individuals choosing the stairs and 0 for individuals choosing the lift MALE1F0: Coded 1 for males and 0 for females NOBAGS1: Coded 1 for no large bag/box and 0 for a large bag/box NW1OW0: Coded 1 for healthy weight and 0 for overweight.   <strong>OutdoorLiftObservationsforPlosOne.xls</strong> LIFT0STAIRS1: Coded 1 for individuals choosing the stairs and 0 for individuals choosing the lift UP1DOWN0: Coding for direction of travel, Up = 1, Down = 0 MALE1F0: Coded 1 for males and 0 for females NOBAGS1: Coded 1 for no large bag and 0 for a large bag HW1OW0: Coded 1 for healthy weight and 0 for overweight.   <strong>ChamberlainSquareObservationsforPlosOne.xls</strong> STAIR1SLOPE0: Coded 1 for individuals choosing the stairs and 0 for individuals choosing the slope HW1OW0: Coded 1 for healthy weight and 0 for overweight. MALE1F0: Coded 1 for males and 0 for females NOBAGS1: Coded 1 for no large bag and 0 for a large bag   <strong>ObservationsUniversityStationforPlosOne.xls</strong> STAIR1SLOPE0: Coded 1 for individuals choosing the stairs and 0 for individuals choosing the slope HW1OW0: Coded 1 for healthy weight and 0 for overweight. MALE1F0: Coded 1 for males and 0 for females NOBAGS1: Coded 1 for no large bag and 0 for a large bag