cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19470553
title: Additional file 5 of Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis

description: Supplementary Table 3. Output table from Simplifi.
DOI: 10.6084/m9.figshare.19470553.v1
title: Additional file 5 of Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis

description: Supplementary Table 3. Output table from Simplifi.
DOI: 10.6084/m9.figshare.19470536
title: Additional file 2 of A beginner’s guide to manual curation of transposable elements

description: Additional file 2. Videocast showing how to run “make_fasta_from_blast” and how to make multiple sequence alignments.
DOI: 10.6084/m9.figshare.19470556
title: Additional file 6 of Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis

description: Supplementary Table 4. Patient data.
DOI: 10.6084/m9.figshare.19470556.v1
title: Additional file 6 of Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis

description: Supplementary Table 4. Patient data.
DOI: 10.6084/m9.figshare.19470536.v1
title: Additional file 2 of A beginner’s guide to manual curation of transposable elements

description: Additional file 2. Videocast showing how to run “make_fasta_from_blast” and how to make multiple sequence alignments.
DOI: 10.6084/m9.figshare.19470545
title: Additional file 3 of A beginner’s guide to manual curation of transposable elements

description: Additional file 3. Videocast showing the process of manual curation of a multiple sequence alignment from a LTR family.
DOI: 10.6084/m9.figshare.19470545.v1
title: Additional file 3 of A beginner’s guide to manual curation of transposable elements

description: Additional file 3. Videocast showing the process of manual curation of a multiple sequence alignment from a LTR family.
DOI: 10.6084/m9.figshare.19470548
title: Additional file 4 of A beginner’s guide to manual curation of transposable elements

description: Additional file 4. Videocast showing the process of manual curation of a multiple sequence alignment from a LINE family.
DOI: 10.6084/m9.figshare.19470551.v1
title: Additional file 5 of A beginner’s guide to manual curation of transposable elements

description: Additional file 5. Videocast showing how to split a multiple sequence alignment in AliView.
DOI: 10.6084/m9.figshare.19470548.v1
title: Additional file 4 of A beginner’s guide to manual curation of transposable elements

description: Additional file 4. Videocast showing the process of manual curation of a multiple sequence alignment from a LINE family.
DOI: 10.6084/m9.figshare.19470551
title: Additional file 5 of A beginner’s guide to manual curation of transposable elements

description: Additional file 5. Videocast showing how to split a multiple sequence alignment in AliView.
DOI: 10.6084/m9.figshare.19470554
title: Additional file 6 of A beginner’s guide to manual curation of transposable elements

description: Additional file 6. Videocast showing a selection of Unix commands to assist the handling of FASTA flies.
DOI: 10.6084/m9.figshare.19470554.v1
title: Additional file 6 of A beginner’s guide to manual curation of transposable elements

description: Additional file 6. Videocast showing a selection of Unix commands to assist the handling of FASTA flies.
DOI: 10.6084/m9.figshare.19470589
title: Additional file 2 of Phenotypic differentiation and diversifying selection in populations of Eruca sativa along an aridity gradient

description: Additional file 2. An Excel file with the list of the AFLP scored loci.
DOI: 10.6084/m9.figshare.19470589.v1
title: Additional file 2 of Phenotypic differentiation and diversifying selection in populations of Eruca sativa along an aridity gradient

description: Additional file 2. An Excel file with the list of the AFLP scored loci.
DOI: 10.6084/m9.figshare.19467419
title: Bartlett Experimental Forest (US-Bar) 2020 and 2021 Flux Data

description: This file consists of 6-hour, 5 Hz raw files (CO2, H2O, and sonic anemometer data), and 30-minute meteorological (Tair, RH, PPFD, etc.) means, from the AmeriFlux tower at Bartlett Experimental Forest. Data are for 2020 and 2021.
DOI: 10.25934/pr00004983.0
title: Available IPD datapackage for study 'Early clinical evaluation of a new antidepressant: A double-blind parallel study comparing paroxetine 30mg daily with amitriptyline 150mg daily'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.19459733
title: Percutaneous nephrostomy in complicated urinary tract infections

description: Purpose: The study aimed to determine the various indications for PCN primarily in patients with a urinary tract infection, and to determine the various complications arising in these patients due to the procedure. Materials and methods A retrospective study of 5-years data based on registers of the Department of Urology was performed. Among 716 patients, 226 inpatient data were obtained, curated, and analyzed. Indications for PCN, the periprocedural complications, the PCN's duration, details of antibiotics, risk factors for UTI, development of acute kidney injury, and renal replacement therapy were recorded. Results Patients were mostly female (53.1%, n=120/226). Malignancy (n=109, carcinoma cervix=68/109) and nephrolithiasis (n=70) contributed to 79.2%. Infections such as pyelonephritis, renal abscess, perinephric abscess, and genitourinary tuberculosis were identified in 47. Infectious diseases were significantly associated with younger age, female gender, diabetes, and prior pyelonephritis. PCN was placed a median of two days after admission, and bilateral PCN was placed in 36 (15.2%) patients. Hydroureteronephrosis (probably infected) was an indication for PCN in 164/226 patients. In 33 patients with an infectious disease, PCN was performed for an obstructed urinary system. One major and two minor complications gave a rate of 0.06% for patients with infections, which was less than the accepted threshold of 4%. Conclusion We intended to study the utility and problems with placing a percutaneous nephrostomy (PCN) catheter in patients with complicated urinary infections. We conclude that PCN is a safe and effective procedure in urinary tract infections with obstructed drainage.
DOI: 10.5281/zenodo.6400187
title: Intramolecular Hydroxyl Nucleophilic Attack Pathway by a Polymeric Water Oxidation Catalyst with Single Cobalt Sites

description: Exploring efficient water oxidation catalysts (WOCs) is the primary challenge in converting renewable energy into fuels. Here we report a molecularly well-defined heterogeneous WOC with Aza-fused-π-conjugated-microporous-polymer (Aza-CMP) coordinated single cobalt sites (Aza-CMP-Co). The single cobalt sites in Aza-CMP-Co exhibited superior activity under alkaline and near-neutral conditions. Moreover, the molecular nature of the isolated catalytic sites makes Aza-CMP-Co a reliable model for studying the heterogeneous water oxidation mechanism. By combining the experimental and theoretical results, a pH-dependent nucleophilic attack pathway for O-O bond formation was proposed. Under alkaline conditions, the intramolecular hydroxyl nucleophilic attack (IHNA) process that the adjacent -OH group nucleophilically attacks Co<sup>4+</sup>=O was identified as the rate-determining step. The process leads to lower activation energy and boosted kinetics than that of the intermolecular water nucleophilic attack pathway. This study provides significant insights into the crucial function of electrolyte pH in water oxidation catalysis and enhancement of the water oxidation activity by regulating the IHNA pathway.
DOI: 10.5281/zenodo.6400186
title: Intramolecular Hydroxyl Nucleophilic Attack Pathway by a Polymeric Water Oxidation Catalyst with Single Cobalt Sites

description: Exploring efficient water oxidation catalysts (WOCs) is the primary challenge in converting renewable energy into fuels. Here we report a molecularly well-defined heterogeneous WOC with Aza-fused-π-conjugated-microporous-polymer (Aza-CMP) coordinated single cobalt sites (Aza-CMP-Co). The single cobalt sites in Aza-CMP-Co exhibited superior activity under alkaline and near-neutral conditions. Moreover, the molecular nature of the isolated catalytic sites makes Aza-CMP-Co a reliable model for studying the heterogeneous water oxidation mechanism. By combining the experimental and theoretical results, a pH-dependent nucleophilic attack pathway for O-O bond formation was proposed. Under alkaline conditions, the intramolecular hydroxyl nucleophilic attack (IHNA) process that the adjacent -OH group nucleophilically attacks Co<sup>4+</sup>=O was identified as the rate-determining step. The process leads to lower activation energy and boosted kinetics than that of the intermolecular water nucleophilic attack pathway. This study provides significant insights into the crucial function of electrolyte pH in water oxidation catalysis and enhancement of the water oxidation activity by regulating the IHNA pathway.
DOI: 10.6084/m9.figshare.18356627
title: Discussions and results of the process of creating the integrated version

description: Discussions and results of the process of creating the integrated version of the Japanese Knowledge and Attitudes of Pain
DOI: 10.6084/m9.figshare.18356627.v2
title: Discussions and results of the process of creating the integrated version

description: Discussions and results of the process of creating the integrated version of the Japanese Knowledge and Attitudes of Pain
DOI: 10.6084/m9.figshare.18356627.v1
title: Discussions and results of the process of creating the integrated version

description: Discussions and results of the process of creating the integrated version of the Japanese Knowledge and Attitudes of Pain
DOI: 10.5281/zenodo.6400219
title: Influence of product selection criteria on clothing purchase and post-purchase behaviours

description: To analyse the influence of the attributes for sustainable clothing selection on sustainable purchase and post-purchase behaviours.
DOI: 10.5281/zenodo.6400218
title: Influence of product selection criteria on clothing purchase and post-purchase behaviours

description: To analyse the influence of the attributes for sustainable clothing selection on sustainable purchase and post-purchase behaviours.
DOI: 10.6084/m9.figshare.19316576.v3
title: GC_SRF: A new generalized strategy for obtaining the lithospheric thickness from S-wave receiver functions and its application to southeastern Tibet

description: Shared SX_Deconv source code, S wave receiver functions, and the filtered raw data used in the paper "GC_SRF: A new generalized strategy for obtaining the lithospheric thickness from S-wave receiver functions and its application to southeastern Tibet" submitted to Journal of Geophysical Research: Solid Earth.<br>Data statement:./Teleseismic_Raw_Data-JGR-bp : Filtered raw data (0.02Hz-0.25Hz) used in this paper../SX_Deconv-JGR : The SX_Deconv source code with an prepared example (XR.ST09)../S_Receiver_Functions-JGR : S receiver functions obtained following the GC_SRF strategy.
DOI: 10.3886/e166461
title: Data on antibiogram and resistance genes of Enterobacterales isolated from fresh vegetables in Ecuador

description: This dataset describes the occurrence, antibiograms, and detection of antibiotic resistance genes of Enterobacterales isolated from fresh vegetables commercialized in Riobamba, Ecuador.
DOI: 10.6084/m9.figshare.19316576.v4
title: GC_SRF: A new generalized strategy for obtaining the lithospheric thickness from S-wave receiver functions and its application to southeastern Tibet

description: Shared SX_Deconv source code and the S wave receiver functions used in the paper "GC_SRF: A new generalized strategy for obtaining the lithospheric thickness from S-wave receiver functions and its application to southeastern Tibet" submitted to Journal of Geophysical Research: Solid Earth.<br>Data statement:./SX_Deconv-JGR : The SX_Deconv source code with an prepared example (XR.ST09)../S_Receiver_Functions-JGR : S receiver functions obtained following the GC_SRF strategy.
DOI: 10.5281/zenodo.6400225
title: Quantum advantage in learning from experiments

description: Raw data for the manuscript "Quantum advantage in learning from experiments".
DOI: 10.5281/zenodo.6400224
title: Quantum advantage in learning from experiments

description: Raw data for the manuscript "Quantum advantage in learning from experiments".
DOI: 10.6084/m9.figshare.19470590
title: Genotyping of 123,898 non-redundant SVs in 95 Chinese cattle

description: Genotyping of the 123,898 nonredundant SVs was performed in 95 cattle that had been sequenced with short paired-end reads. Reads from all short-read sequencing datasets were mapped to the Mongolian_v1 reference. Mapping was performed by BWA-MEM (v.0.7.13-r1126) with default parameters. We used Paragraph (v.2.4a) to genotype the combined SVs using short-read sequencing data. BCFtools (v.1.9) was used to combine the results for all genotypes. Then, we replaced all the unfiltered genotypes in Paragraph with missing genotypes (./.) and excluded SVs without any remaining nonreference genotypes. To obtain a high-quality dataset of genotyped SVs, we removed the SVs that were genotyped in less than 80% of cattle.
DOI: 10.6084/m9.figshare.19470590.v1
title: Genotyping of 123,898 non-redundant SVs in 95 Chinese cattle

description: Genotyping of the 123,898 nonredundant SVs was performed in 95 cattle that had been sequenced with short paired-end reads. Reads from all short-read sequencing datasets were mapped to the Mongolian_v1 reference. Mapping was performed by BWA-MEM (v.0.7.13-r1126) with default parameters. We used Paragraph (v.2.4a) to genotype the combined SVs using short-read sequencing data. BCFtools (v.1.9) was used to combine the results for all genotypes. Then, we replaced all the unfiltered genotypes in Paragraph with missing genotypes (./.) and excluded SVs without any remaining nonreference genotypes. To obtain a high-quality dataset of genotyped SVs, we removed the SVs that were genotyped in less than 80% of cattle.
DOI: 10.25934/pr00006748.0
title: Available IPD datapackage for study 'Study comparing the effects of oral Paroxetine and Amitriptyline in adult patients with depression'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/pr00006746.0
title: Available IPD datapackage for study 'A Multi-Centre General Practice Study to Compare the Effectiveness and Tolerability of Paroxetine in Elderly Depressed Patients by Double Blind Comparison with Amitriptyline'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6073/pasta/8fc105d0cc3c99e6405754de9dffcd0c
title: High-frequency measurements of chlorophyll fluorescence, characterizing F.I.Z. bias.

description: This dataset consists of high-frequency measurements of chlorophyll a fluorescence (Fchl), collected as part of manipulative experiments conducted in Lake George, NY. Experiments were set up to test for the potential of phototactic zooplankton to interfere with Fchl measurements. To test for any bias associated with fluorometer interference by zooplankton (FIZ), fluorometers were placed in the shallows of Lake George, and collected data under various treatment conditions. It was found that excitation light from fluorometers triggered a positive phototactic response during nighttime hours, biasing Fchl data by as much as 31x. Full results gleaned from this dataset can be found in: Moriarty, V.W., Lucius, M.A., Johnston, K.E., Borrelli, J.J., Mattes, B.M., Pezzuoli, A.R., Watson, C.D., Eichler, L.W. and Relyea, R.A. (2021), Fluorometer optical path interference via zooplankton phototaxis: Implications for high‐frequency data collection. Limnol Oceanogr Methods. https://doi.org/10.1002/lom3.10411
DOI: 10.25934/pr00006742.0
title: Available IPD datapackage for study 'Assessment of the efficacy and tolerability of paroxetine by double blind comparison with amitriptyline in depressed patients'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5517/ccdc.csd.cc2bmbbn
title: CCDC 2163531: Experimental Crystal Structure Determination

description: Related Article: yufuqing|2022|CSD Communication|||
DOI: 10.25934/pr00006745.0
title: Available IPD datapackage for study 'An Interim Report of a Study to Assess the Effectiveness and Tolerance of Paroxetine in Depressed Patients by Double-Blind Comparison with Amitriptyline (A follow-up final report was not prepared and is not expected for this study).'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.17105060
title: RAW DATA GAMES .xlsx

description: The raw data for the extraction of the information related to the periods of submaximal intensity
DOI: 10.6084/m9.figshare.19470785.v1
title: Paper list for 'Security for Machine Learning-based Software Security: a survey of threats, practices and challenges'

description: Paper list and preliminary analysis for paper
DOI: 10.6084/m9.figshare.19470785
title: Paper list for 'Security for Machine Learning-based Software Security: a survey of threats, practices and challenges'

description: Paper list and preliminary analysis for paper
DOI: 10.25345/c5v97zw08
title: MassIVE MSV000089167 - Temporal Profiling of PyMT Tumour Matrisome during Progression
title: In this study, through coupling of our ISDoT tissue decellularisation technology with quantitative mass spectrometry, we explored the changing tumour matrisome during mammary tumourigenesis in the PyMT breast cancer model compared to age-matched healthy control mammary gland
DOI: 10.6084/m9.figshare.19470914
title: Shozaki et al_martian chaos ML_imagedata&classifiers&classification_v2

description: This is the revised research data used in the study on Shozaki et al.
DOI: 10.6084/m9.figshare.14937378.v1
title: Earthquake and tilt data for the 2019 Hakone swarm activity

description: The catalog for the earthquake swarms and repeating earthquakes during the 2019 Hakone swarm activity, information of focal mechanisms and temporal sequence of tilt data are available in this page.<br>Hypocenters.dat:Hypocenters of earthquakes estimated by the double difference method (Waldhauser and Ellsworth, 2000) and Matched filter analysis. The file format is same as that of output file by hypoDD code that is described in the hypoDD user's manual (https://www.ldeo.columbia.edu/~felixw/papers/Waldhauser_OFR2001.pdf). The origin time is described by using JST = UT +8h.<br>Repeater.dat:Hypocenters of each repeater group. The file format is same as that of "Hypocenters.dat".<br>Focal_mechanisms.dat:Source parameters of each focal mechanism are listed in order of origin time (year month day hour minute sec, JST = UT + 8h), hypocenter location (latitude longitude depth), magnitude, azimuth and plunge (angle from horizonal to up-vertical) of P axis, azimuth and plunge of B axis, azimuth and plunge of T axis, strike, dip rake angles of nodal plane, strike dip, rake angles of the other nodal plane and error of focal mechanism (degree).<br>Tilt_select.dat:Time sequence of tilt changes in order of time (JST=UT+8h), tilt data removing the linear trend corresponding to a long-term drift and the tidal component and the response to atmospheric pressure changes, raw tilt data, station name, component name.<br>ReferenceWaldhauser, F., Ellsworth, W.L., 2000. A Double-Difference Earthquake Location Algorithm: Method and Application to the Northern Hayward Fault, California. Bull. Seismol. Soc. Am. 90, 1353-1368, doi:10.1785/0120000006.<br>
DOI: 10.6084/m9.figshare.19471001
title: Supplementary Data for map-based driver proportions at the national level.xlsx

description: Proportions and confidential intervals (CIs) of forest disturbance drivers and forest with zero or minor loss at the national scale. Mean, Lower of 95% CI and Upper of 95% CI: mean, 0.025 percentile and 0.975 percentile of proportions among the 1000 replications of randomly drawn accuracies. Original proportion: original driver proportion based on the global driver map of Curtis et al. (2018). All species range: mean driver proportion within all threatened species’ ranges. Forest specialist, Mammal, Bird, Reptile, Amphibian, NT, VU, EN, and CR: driver proportion within the ranges of such species. <br>
DOI: 10.25345/c5qj7824b
title: MassIVE MSV000089168 - Hepatic protein and phosphoprotein signatures of alcohol-associated cirrhosis and hepatitis
title: LC-MS/MS tryptic peptide data comprising TMT10 analysis of both global and phosphoproteome of alcoholic hepatitis liver with relevant controls. Two sets of data include both explant liver samples and liver biopsy data. Data was searched with MS-GF+.