cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/npjsho/fdqmp7
title: 0-24.25V

description: sigma=0.25V; This is a FITS file with 1 (primary) HDU. The following recognized metadata keys have been found in the FITS file: NAXIS2; NAXIS; NAXIS1; NAXIS0;
DOI: 10.7910/dvn/npjsho/0mpp3z
title: 0-7.25V

description: sigma=0.25V; This is a FITS file with 1 (primary) HDU. The following recognized metadata keys have been found in the FITS file: NAXIS2; NAXIS; NAXIS1; NAXIS0;
DOI: 10.7910/dvn/npjsho/4cb5t3
title: 0-11.25V

description: sigma=0.25V; This is a FITS file with 1 (primary) HDU. The following recognized metadata keys have been found in the FITS file: NAXIS2; NAXIS; NAXIS1; NAXIS0;
DOI: 10.7910/dvn/npjsho/jmv1wk
title: 0-53.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/xkejjc
title: 0-9.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/mrfw78
title: 0-44.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/27dkva
title: 0-50.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/m5ojyz
title: 0-12.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/vkhweg
title: 0-36.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/aejusu
title: 0-2.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/h9obti
title: 0-54.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/yhgpiy
title: 0-43.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/punukt
title: 0-48.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/wkcge5
title: 0-39.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/pd9exb
title: 0-16.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/kwmwid
title: 0-5.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/tybtkn
title: 0-41.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885356
title: Additional file 3: of Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria

description: The R2 and p values for the fit between Ks and cost-efficiency optimization for the 176 species pairs with mean Ksâ
DOI: 10.6084/m9.figshare.6885356.v1
title: Additional file 3: of Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria

description: The R2 and p values for the fit between Ks and cost-efficiency optimization for the 176 species pairs with mean Ksâ
DOI: 10.7910/dvn/npjsho/8og3b8
title: 0-15.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/tdzcwy
title: 0-11.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/tgpzym
title: 0-8.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/e5x3fk
title: 0-28.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885344
title: Additional file 1: of A mathematical model for Zika virus transmission dynamics with a time-dependent mosquito biting rate

description: The main code for estimating the weekly biting rates and running the simulation is Estimate_Biting_Rate_Main_Code.m and Main_Code.m, respectively. (7Z 3143 kb)
DOI: 10.6084/m9.figshare.6885344.v1
title: Additional file 1: of A mathematical model for Zika virus transmission dynamics with a time-dependent mosquito biting rate

description: The main code for estimating the weekly biting rates and running the simulation is Estimate_Biting_Rate_Main_Code.m and Main_Code.m, respectively. (7Z 3143 kb)
DOI: 10.7910/dvn/npjsho/bffwva
title: 0-38.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/yipapj
title: 0-6.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885338
title: Additional file 1: of Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria

description: NCBI accession numbers for the 1320 species used in this analysis. Also provided are the R2 values for the model fit between the real codon use frequencies and model fitted codon use frequencies and the fitted values for each model parameter. (XLSX 162 kb)
DOI: 10.6084/m9.figshare.6885338.v1
title: Additional file 1: of Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria

description: NCBI accession numbers for the 1320 species used in this analysis. Also provided are the R2 values for the model fit between the real codon use frequencies and model fitted codon use frequencies and the fitted values for each model parameter. (XLSX 162 kb)
DOI: 10.7910/dvn/npjsho/p8j4ng
title: 0-29.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/tzgfic
title: 0-33.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885329
title: Additional file 1: of HIV and TB co-infection in the ART era: CD4 count distributions and TB case fatality in Cape Town

description: Appendix 1. Extract from the electronic TB register ( ETR.net ) of case records for all newly registered adult patients with drug sensitive TB who were treated in primary care TB clinics in Cape Town over the study period. (XLSX 12993 kb)
DOI: 10.7910/dvn/npjsho/22yvih
title: 0-7.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/q2mkcn
title: 0-46.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885329.v1
title: Additional file 1: of HIV and TB co-infection in the ART era: CD4 count distributions and TB case fatality in Cape Town

description: Appendix 1. Extract from the electronic TB register ( ETR.net ) of case records for all newly registered adult patients with drug sensitive TB who were treated in primary care TB clinics in Cape Town over the study period. (XLSX 12993 kb)
DOI: 10.7910/dvn/npjsho/rn9rkw
title: 0-55.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885320
title: Additional file 1: of sRNAPipe: a Galaxy-based pipeline for bioinformatic in-depth exploration of small RNAseq data

description: ReadMe. This file gives instructions concerning the prerequisites and the installation of sRNAPipe. (TXT 3Â kb)
DOI: 10.7910/dvn/npjsho/xsu5xj
title: 0-40.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885320.v1
title: Additional file 1: of sRNAPipe: a Galaxy-based pipeline for bioinformatic in-depth exploration of small RNAseq data

description: ReadMe. This file gives instructions concerning the prerequisites and the installation of sRNAPipe. (TXT 3Â kb)
DOI: 10.7910/dvn/npjsho/ilqmjs
title: 0-24.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/2orl8w
title: 0-22.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/0vykak
title: 0.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/uds2nm
title: 0-42.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/byfnun
title: 0-17.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/qmnwdd
title: 0-52.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/zlqcvi
title: 0-61.5V

description: sigma=0.75volts
DOI: 10.7910/dvn/npjsho/tsltu4
title: 0-32.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/namqcq
title: 0-23.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/fen3u1
title: 0-25.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/hum8dc
title: 0-3.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/nxj8jl
title: 0-20.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/jigqsl
title: 0-60.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/abw3tk
title: 0-49.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/lbvehp
title: 0-14.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/fmg88r
title: 0-19.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885278
title: 2013 NSF GRFP application materials

description: Application materials for the 2013 NSF GRFP application. I got lucky, and was selected as a fellow. I'm posting these in the hope others might find them useful when writing their applications. For more info, click through to the blog post I wrote about this.
DOI: 10.7910/dvn/npjsho/i6mugb
title: 0-47.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885275
title: Taxonomic significance of leaf epidermis in tribe <i>Trifolieae</i> L. (Leguminosae; Papilionoideae) in Pakistan

description: Leaf epidermal anatomy of tribe <i>Trifolieae</i> L. has been studied with the objective to assess the characteristics that can be used to reevaluate the circumscription and systematic position of tribe. Using light and scanning electron microscopy, leaf epidermal characters of 17 species belonging to four genera of <i>Trifolieae</i> (<i>Medicago</i> L., <i>Melilotus</i> Mill., <i>Trifolium</i> L. and <i>Trigonella</i> L.) are investigated. The placement of <i>Melilotus</i> and <i>Trigonella</i> in one section <i>Grammocarpus</i> was also reassessed on the basis of leaf epidermal characters. Presence of characteristic anomocytic stomata with great variation of size and short, unbranched, unicellular, non glandular trichomes with acute apex are diagnostic characters for delimitation of species in <i>Trifolieae</i>. The distributional density of trichomes varies greatly between genera and found to be highest in genus <i>Medicago</i>. The value of stomatal index ranges between 24.6% (<i>Trifolium dubium</i>) to 83% (<i>Trigonella foeno graceum</i>). In general, present study concludes that the variations of all traits are mostly sustained and intrinsic to the species and of promising taxonomic value. The combination of leaf epidermal characters in correlation with other traits has potential for taxonomic resolution at species level. Further phylogenetic studies on tribe, based on more comprehensive sampling will probably explain intrageneric relationships in <i>Trifolieae</i>.
DOI: 10.7910/dvn/npjsho/xezh2g
title: 0-26.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885275.v1
title: Taxonomic significance of leaf epidermis in tribe <i>Trifolieae</i> L. (Leguminosae; Papilionoideae) in Pakistan

description: Leaf epidermal anatomy of tribe <i>Trifolieae</i> L. has been studied with the objective to assess the characteristics that can be used to reevaluate the circumscription and systematic position of tribe. Using light and scanning electron microscopy, leaf epidermal characters of 17 species belonging to four genera of <i>Trifolieae</i> (<i>Medicago</i> L., <i>Melilotus</i> Mill., <i>Trifolium</i> L. and <i>Trigonella</i> L.) are investigated. The placement of <i>Melilotus</i> and <i>Trigonella</i> in one section <i>Grammocarpus</i> was also reassessed on the basis of leaf epidermal characters. Presence of characteristic anomocytic stomata with great variation of size and short, unbranched, unicellular, non glandular trichomes with acute apex are diagnostic characters for delimitation of species in <i>Trifolieae</i>. The distributional density of trichomes varies greatly between genera and found to be highest in genus <i>Medicago</i>. The value of stomatal index ranges between 24.6% (<i>Trifolium dubium</i>) to 83% (<i>Trigonella foeno graceum</i>). In general, present study concludes that the variations of all traits are mostly sustained and intrinsic to the species and of promising taxonomic value. The combination of leaf epidermal characters in correlation with other traits has potential for taxonomic resolution at species level. Further phylogenetic studies on tribe, based on more comprehensive sampling will probably explain intrageneric relationships in <i>Trifolieae</i>.
DOI: 10.6084/m9.figshare.6885260
title: Influence of Moringa Oleifera Leaf Meal Used as Phytogenic Feed Additive on the Serum Metabolites and Egg Bioactive Compounds in Commercial Layers

description: ABSTRACT Phytogenic feed additives have been increasingly used in the last decade, and several plants and their metabolites have been investigated for the said purpose. In this context, present study aimed at evaluating the effects of Moringa oleifera as feed additive on layer performance, and egg bioactive compound levels and nutrient profile. HyLine W36 layers (n=200), 50 weeks of age, were randomly distributed in four treatments with five replicates of ten birds each. Four isocaloric (2725 kcal/kg) and isonitrogenous (CP 16%) diets were formulated and supplemented with 0, 0.5, 1.0, or 1.5% (w/w) of dried Moringa oleifera leaf powder (MLM). The results showed positive effects of MLM on egg production, egg mass, and feed conversion ratio, but negative effects on egg quality (p≤0.05). The contents of bioactive compounds, like β-carotene, quercetin, and selenium, in the diet and in the egg yolk were significantly (p≤0.05) higher in the group fed1.5% MLM, with values of 8.90, 48.88, and 0.54 mg/kg feed and 4906, 241 and 56.82 µg/100g yolk, respectively. Creatinine and glucose serum levels and cholesterol levels (serum and eggs) linearly increased as a function of increasing MLM dietary levels (p≤0.05). Antibody titers against Newcastle Disease significantly improved (p≤0.05) in the group fed the diet supplemented with 1.5% MLM. It was concluded that Moringa oleifera used as phytogenic feed additive enriches eggs with bioactive and functional compounds, and improves the production performance and the health status of layers.
DOI: 10.7910/dvn/npjsho/wwcznl
title: 0-4.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885260.v1
title: Influence of Moringa Oleifera Leaf Meal Used as Phytogenic Feed Additive on the Serum Metabolites and Egg Bioactive Compounds in Commercial Layers

description: ABSTRACT Phytogenic feed additives have been increasingly used in the last decade, and several plants and their metabolites have been investigated for the said purpose. In this context, present study aimed at evaluating the effects of Moringa oleifera as feed additive on layer performance, and egg bioactive compound levels and nutrient profile. HyLine W36 layers (n=200), 50 weeks of age, were randomly distributed in four treatments with five replicates of ten birds each. Four isocaloric (2725 kcal/kg) and isonitrogenous (CP 16%) diets were formulated and supplemented with 0, 0.5, 1.0, or 1.5% (w/w) of dried Moringa oleifera leaf powder (MLM). The results showed positive effects of MLM on egg production, egg mass, and feed conversion ratio, but negative effects on egg quality (p≤0.05). The contents of bioactive compounds, like β-carotene, quercetin, and selenium, in the diet and in the egg yolk were significantly (p≤0.05) higher in the group fed1.5% MLM, with values of 8.90, 48.88, and 0.54 mg/kg feed and 4906, 241 and 56.82 µg/100g yolk, respectively. Creatinine and glucose serum levels and cholesterol levels (serum and eggs) linearly increased as a function of increasing MLM dietary levels (p≤0.05). Antibody titers against Newcastle Disease significantly improved (p≤0.05) in the group fed the diet supplemented with 1.5% MLM. It was concluded that Moringa oleifera used as phytogenic feed additive enriches eggs with bioactive and functional compounds, and improves the production performance and the health status of layers.
DOI: 10.7910/dvn/npjsho/odnlzh
title: 0-31.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/tsi3zf
title: 0-21.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885257
title: Identifying Optimum Herbicide Mixtures to Manage and Avoid Fenoxaprop-p-Ethyl Resistant Phalaris minor in Wheat

description: ABSTRACT Use of herbicide mixtures has been advocated as most effective strategy for avoidance and management of herbicide resistant weeds. Effect of twelve selected treatments of four herbicides (clodinafop-propargil, metribuzin, pinoxaden and sulfosulfuron) two-way mixtures at different doses was investigated against fenoxaprop-p-ethyl resistant and susceptible populations of P. minor grown along the wheat plants. In repeated experiment, herbicides mixtures were applied at 3 to 4 leaf stage of P. minor under greenhouse conditions. All the herbicide mixtures were effective to control resistant as well as susceptible P. minor. Mixtures having 75% lethal dose of each mixture component provided best control against P. minor. Mixtures with 50% lethal dose of each herbicide also provided more than 80% control of P. minor. Surviving P. minor plants after exposure to herbicide mixtures showed reduced growth and seed production potential. No mixture combination produced phytotoxic effects on wheat plant up to 75% of lethal dose of each mixture component. Mixtures including clodinafop-propargil + metribuzin, pinoxaden + sulfosulfuron and pinoxaden + metribuzin at 100% dose of each mixture component produced minor phytotoxic effects on wheat plants and caused no reduction in terms of ultimate growth and grain yield. However, mixture of sulfosulfuron + clodinafop-propargil at 100% dose of each component was phytotoxic to wheat and caused significant reduction in term of growth and grain yield. So, farmers can use these mixtures even at 75% of recommended dose of mixture component to control susceptible and resistant P. minor in wheat.
DOI: 10.7910/dvn/npjsho/hiwpln
title: 0-13.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885257.v1
title: Identifying Optimum Herbicide Mixtures to Manage and Avoid Fenoxaprop-p-Ethyl Resistant Phalaris minor in Wheat

description: ABSTRACT Use of herbicide mixtures has been advocated as most effective strategy for avoidance and management of herbicide resistant weeds. Effect of twelve selected treatments of four herbicides (clodinafop-propargil, metribuzin, pinoxaden and sulfosulfuron) two-way mixtures at different doses was investigated against fenoxaprop-p-ethyl resistant and susceptible populations of P. minor grown along the wheat plants. In repeated experiment, herbicides mixtures were applied at 3 to 4 leaf stage of P. minor under greenhouse conditions. All the herbicide mixtures were effective to control resistant as well as susceptible P. minor. Mixtures having 75% lethal dose of each mixture component provided best control against P. minor. Mixtures with 50% lethal dose of each herbicide also provided more than 80% control of P. minor. Surviving P. minor plants after exposure to herbicide mixtures showed reduced growth and seed production potential. No mixture combination produced phytotoxic effects on wheat plant up to 75% of lethal dose of each mixture component. Mixtures including clodinafop-propargil + metribuzin, pinoxaden + sulfosulfuron and pinoxaden + metribuzin at 100% dose of each mixture component produced minor phytotoxic effects on wheat plants and caused no reduction in terms of ultimate growth and grain yield. However, mixture of sulfosulfuron + clodinafop-propargil at 100% dose of each component was phytotoxic to wheat and caused significant reduction in term of growth and grain yield. So, farmers can use these mixtures even at 75% of recommended dose of mixture component to control susceptible and resistant P. minor in wheat.
DOI: 10.6084/m9.figshare.6885251
title: Prediction of apparent metabolizable energy and metabolizable energy corrected for nitrogen of corn according to physical classification of the grain

description: ABSTRACT The objective of this study was to develop an equation to determine the apparent metabolizable energy (AME) and metabolizable energy corrected for nitrogen balance (AMEn) using a physical-based classification of corn. A total of 5,055 samples were taken from bulk cargo trucks, over a five-year period. The parameters studied were the variables related to the physical characteristics of grains. The density of maize was evaluated, and AME and AMEn were calculated. The average value for AME was 3,375 kcal/kg, and two groups were formed of high quality and low quality for all samples. Stepwise regression analysis was then carried out using grain quality to estimate AME and AMEn, and the validation of the equations was carried out with 6,490 independent samples. The average value for density was 767.7 kg/m3. The multiple regressions used to estimate AME and AMEn as a function of humidity, density, and physical composition of corn kernels showed that moisture was included for AME, but not for AMEn. The equations presented high coefficients of determination (R2) for AME (0.994) and AMEn (0.987). The discriminant analyses correctly classified 98% of the high-quality samples and 96.69% of low-quality samples, so the error was smaller than the expected. The calculated equations were shown to be good at discriminating between samples of high and low quality of corn according to its physical composition, and the most important variables for separation between groups were damaged grain fraction, impurities, burnt, and soft. The correlation between calculated (independent samples) and estimated metabolizable energy and AMEn were, respectively, 0.9942 and 0.9859. The corn energy values can be estimated based on physical evaluation of the grain.
DOI: 10.7910/dvn/npjsho/y2a4wq
title: 0-59.5V

description: sigma=0.5volts
DOI: 10.6084/m9.figshare.6885236
title: Organ-wide profiling in mouse reveals high editing levels of Filamin B mRNA in the musculoskeletal system

description: Adenosine to inosine RNA editing in protein-coding messenger RNAs (mRNAs) potentially leads to changes in the amino acid composition of the encoded proteins. The mRNAs encoding the ubiquitously expressed actin-crosslinking proteins Filamin A and Filamin B undergo RNA editing leading to a highly conserved glutamine to arginine exchange at the identical position in either protein. Here, by targeted amplicon sequencing we analysed the RNA editing of Filamin B across several mouse tissues during post-natal development. We find highest filamin B editing levels in skeletal muscles, cartilage and bones, tissues where Filamin B function seems most important. Through the analysis of Filamin B editing in mice deficient in either ADAR1 or 2, we identified ADAR2 as the enzyme responsible for Filamin B RNA editing. We show that in neuronal tissues Filamin B editing drops in spliced transcripts indicating regulated maturation of edited transcripts. We show further that the variability of Filamin B editing across several organs correlates with its mRNA expression.
DOI: 10.6084/m9.figshare.6885251.v1
title: Prediction of apparent metabolizable energy and metabolizable energy corrected for nitrogen of corn according to physical classification of the grain

description: ABSTRACT The objective of this study was to develop an equation to determine the apparent metabolizable energy (AME) and metabolizable energy corrected for nitrogen balance (AMEn) using a physical-based classification of corn. A total of 5,055 samples were taken from bulk cargo trucks, over a five-year period. The parameters studied were the variables related to the physical characteristics of grains. The density of maize was evaluated, and AME and AMEn were calculated. The average value for AME was 3,375 kcal/kg, and two groups were formed of high quality and low quality for all samples. Stepwise regression analysis was then carried out using grain quality to estimate AME and AMEn, and the validation of the equations was carried out with 6,490 independent samples. The average value for density was 767.7 kg/m3. The multiple regressions used to estimate AME and AMEn as a function of humidity, density, and physical composition of corn kernels showed that moisture was included for AME, but not for AMEn. The equations presented high coefficients of determination (R2) for AME (0.994) and AMEn (0.987). The discriminant analyses correctly classified 98% of the high-quality samples and 96.69% of low-quality samples, so the error was smaller than the expected. The calculated equations were shown to be good at discriminating between samples of high and low quality of corn according to its physical composition, and the most important variables for separation between groups were damaged grain fraction, impurities, burnt, and soft. The correlation between calculated (independent samples) and estimated metabolizable energy and AMEn were, respectively, 0.9942 and 0.9859. The corn energy values can be estimated based on physical evaluation of the grain.
DOI: 10.7910/dvn/npjsho/xnswbb
title: 0-45.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/3gtljl
title: 0-30.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/l9xgaa
title: 0-34.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/7x1o1q
title: 0-57.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/sfrm0t
title: 0-1.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/urs6tp
title: 0-18.5V

description: sigma=0.5volts
DOI: 10.7910/dvn/npjsho/98chlv
title: 0-35.5V

description: sigma=0.5volts