cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ehvu6b
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON ((-97.92676 22.83453, -97.94573 22.85647, -97.95845 22.87519, -97.96925 22.86988, -97.96895 22.85717, -97.97701 22.85455, -97.96254 22.84112, -97.93924 22.8318, -97.92917 22.79402, -97.95102 22.78345, -97.99319 22.79184, -98.04142 22.77308, -98.04743 22.77378, -98.09017 22.76138, -98.09523 22.72375, -98.08032 22.70101, -98.00179 22.70544, -97.99394 22.70696, -97.89191 22.72345, -97.86321 22.70837, -97.85607 22.70691, -97.8593 22.73422, -97.89301 22.74863, -97.88734 22.76441, -97.90202 22.78342, -97.92131 22.83379, -97.92676 22.83453))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008654-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxkmmd
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodyera scripta (Rchb.f.) Schltr."
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232795-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj6bzc
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.18238 -54.42754,-70.68603 -54.52557,-74.10069 -50.31034,-75.76718 -49.8202,-74.18238 -54.42754))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diomedeidae"
 ]
}

 The dataset's 8 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069178-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.946hv5
title: Occurrence Download

description: A dataset containing 2769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "PublishingOrg is one of (dd862d06-e6e9-4ab9-bc86-c875cc148c1f, c5f7ef70-e233-11d9-a4d6-b8a03c50a862, e2e717bf-551a-4917-bdc9-4fa0f342c530, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, 04fd2e13-6881-4e5c-9dd1-8fdd9ab993c1, 396d5f30-dea9-11db-8ab4-b8a03c50a862, 80960f60-ad5e-11da-9c37-b8a03c50a862, 0c6d40e3-5d96-4a2d-9342-b02833aaa766)",
 "TaxonKey is Bugeranus carunculatus (Gmelin, 1789)"
 ]
}

 The dataset includes 2769 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231999-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7vdft
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus sempervirens G.J.Lewis"
 ]
}

 The dataset includes 56 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229177-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thnmj2
title: Occurrence Download

description: A dataset containing 25207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters is less than or equal to 10000.0",
 "Country is United States of America",
 "Geometry POLYGON((-124.44112 32.25314,-112.6108 32.25314,-112.6108 42.41684,-124.44112 42.41684,-124.44112 32.25314))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calypte anna (R.Lesson, 1829)",
 "Year 1875-2023"
 ]
}

 The dataset includes 25207 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008650-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kar6yj
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontophrynus occidentalis (Berg, 1896)"
 ]
}

 The dataset includes 308 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232807-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcazrn
title: Occurrence Download

description: A dataset containing 58367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Deschampsia P.Beauv."
 ]
}

 The dataset includes 58367 records from 550 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014324-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wub3mj
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus schweinfurthii (Baker) Goldblatt & M.P.de Vos"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229174-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmvhjd
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gonocarpus implexus Orchard"
 ]
}

 The dataset includes 88 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231935-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93fuyr
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodyera seikoomontana Yamam."
 ]
}

 The dataset includes 42 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232800-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epvecc
title: Occurrence Download

description: A dataset containing 11274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry MULTIPOLYGON (((-97.84172 22.39655, -97.92157 22.37702, -97.92993 22.37873, -98.02052 22.43982, -98.06987 22.45846, -98.14689 22.53568, -98.18747 22.5433, -98.29033 22.53607, -98.34612 22.5286, -98.40983 22.48217, -98.51153 22.25918, -98.5439 22.2003, -98.56464 22.16808, -98.55227 22.09345, -98.51621 22.02771, -98.44949 21.97712, -98.32292 21.93261, -98.19773 21.90577, -98.10387 21.86862, -97.95509 21.89511, -97.87323 21.9374, -97.77697 21.94555, -97.77124 21.95013, -97.76436 21.9556, -97.73218 21.97464, -97.7467 22.00527, -97.7553 22.02795, -97.76547 22.03733, -97.78502 22.12257, -97.77016 22.09051, -97.74748 22.03186, -97.73184 22.01622, -97.7686 22.11084, -97.79206 22.24142, -97.79206 22.26723, -97.80222 22.29538, -97.82725 22.34464, -97.84172 22.39655), (-97.78346 22.1296, -97.7944 22.15854, -97.79128 22.16479, -97.78737 22.15541, -97.78346 22.1296)), ((-97.73184 22.01622, -97.72871 21.99276, -97.7162 21.98651, -97.73184 22.01622)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 11274 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008656-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8bdp5
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus serapiiflorus Goldblatt"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229178-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prxc4j
title: Occurrence Download

description: A dataset containing 2583 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma velasci Dugès, 1888"
 ]
}

 The dataset includes 2583 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231970-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kozc6y
title: Occurrence Download

description: A dataset containing 117114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 117114 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047815-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gycw4f
title: Occurrence Download

description: A dataset containing 48576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen, Occurrence evidence)",
 "Country is one of (United States of America, Bolivia (Plurinational State of), Ecuador, Peru, Panama, Colombia, Brazil, Costa Rica, French Guiana, Argentina)",
 "TaxonKey is Alligatoridae",
 "Year 1999-2024"
 ]
}

 The dataset includes 48576 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078041-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jwsxx
title: Occurrence Download

description: A dataset containing 560252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 560252 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094632-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgmls9
title: Occurrence Download

description: A dataset containing 1053 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "TaxonKey is Dendropsophus labialis (Peters, 1863)"
 ]
}

 The dataset includes 1053 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047816-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwnmh2
title: Occurrence Download

description: A dataset containing 13105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-106 40,-105 40,-105 41,-106 41,-106 40))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "Year 2000-2024"
 ]
}

 The dataset includes 13105 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016324-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwxgtt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chenopodium ficifolium Sm."
 ]
}

 The dataset includes 0 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0345322-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeb0i6
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylarana spinulosa (Smith, 1923)"
 ]
}

 The dataset includes 114 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047817-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11371202
title: Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)

description: Nuclear and plastid datasets and phylogenomic workflow associated to "Genomic Incongruence Accompanies the Evolution of Flower Symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)", published in Frontiers in Plant Science 15:1340056.This compressed file (poppy_repo.zip) contains a markdown readme file (poppy_readme.md) describing the phylogenomic workflow followed, as well as two dataset folders (poppy_nuc and poppy_pl) divided into four (aln_nuc, gtr_nuc, sptr_nuc, and chrono_nuc) and three (aln_pl, sptr_pl, and chrono_pl) subfolders, respectively.The nuclear folder (poppy_nuc) comprises shrunk and trimmed alignments (aln_nuc), ML gene trees (gtr_nuc), coalescent species trees (sptr_nuc), and a time tree (chrono_nuc).The plastid folder (poppy_pl) comprises shrunk and trimmed alignments (aln_pl), a concatenated ML species tree (sptr_pl), and a time tree (chrono_pl).The research article is available at https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1340056 (doi: 10.3389/fpls.2024.1340056).
description: Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.
DOI: 10.5281/zenodo.11371203
title: Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)

description: Nuclear and plastid datasets and phylogenomic workflow associated to "Genomic Incongruence Accompanies the Evolution of Flower Symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)", published in Frontiers in Plant Science 15:1340056.This compressed file (poppy_repo.zip) contains a markdown readme file (poppy_readme.md) describing the phylogenomic workflow followed, as well as two dataset folders (poppy_nuc and poppy_pl) divided into four (aln_nuc, gtr_nuc, sptr_nuc, and chrono_nuc) and three (aln_pl, sptr_pl, and chrono_pl) subfolders, respectively.The nuclear folder (poppy_nuc) comprises shrunk and trimmed alignments (aln_nuc), ML gene trees (gtr_nuc), coalescent species trees (sptr_nuc), and a time tree (chrono_nuc).The plastid folder (poppy_pl) comprises shrunk and trimmed alignments (aln_pl), a concatenated ML species tree (sptr_pl), and a time tree (chrono_pl).The research article is available at https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1340056 (doi: 10.3389/fpls.2024.1340056).
description: Reconstructing evolutionary trajectories and transitions that have shaped floral diversity relies heavily on the phylogenetic framework on which traits are modelled. In this study, we focus on the angiosperm order Ranunculales, sister to all other eudicots, to unravel higher-level relationships, especially those tied to evolutionary transitions in flower symmetry within the family Papaveraceae. This family presents an astonishing array of floral diversity, with actinomorphic, disymmetric (two perpendicular symmetry axes), and zygomorphic flowers. We generated nuclear and plastid datasets using the Angiosperms353 universal probe set for target capture sequencing (of 353 single-copy nuclear ortholog genes), together with publicly available transcriptome and plastome data mined from open-access online repositories. We relied on the fossil record of the order Ranunculales to date our phylogenies and to establish a timeline of events. Our phylogenomic workflow shows that nuclear-plastid incongruence accompanies topological uncertainties in Ranunculales. A cocktail of incomplete lineage sorting, post-hybridization introgression, and extinction following rapid speciation most likely explain the observed knots in the topology. These knots coincide with major floral symmetry transitions and thus obscure the order of evolutionary events.
DOI: 10.15468/dl.f53und
title: Occurrence Download

description: A dataset containing 2145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dionaea muscipula Ellis"
 ]
}

 The dataset includes 2145 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078084-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffsqnh
title: Occurrence Download

description: A dataset containing 2844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IDN.17_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 2844 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142637-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwyxko
title: Occurrence Download

description: A dataset containing 1645 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is IFO Bacteria database"
 ]
}

 The dataset includes 1645 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047818-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4n2s35
title: Occurrence Download

description: A dataset containing 4242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Villosa fabalis (I.Lea, 1831), Epioblasma triquetra (Rafinesque, 1820), Plethobasus cyphus (Rafinesque, 1820), Cumberlandia monodonta (Say, 1829))"
 ]
}

 The dataset includes 4242 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078086-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhpmmc
title: Occurrence Download

description: A dataset containing 1225199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 1225199 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139376-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qswjco
title: Occurrence Download

description: A dataset containing 41385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myodes gapperi (Vigors, 1830)"
 ]
}

 The dataset includes 41385 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047820-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4fsns
title: Occurrence Download

description: A dataset containing 9139 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Emberiza tristrami Swinhoe, 1870"
 ]
}

 The dataset includes 9139 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002605-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54mpau
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Reticulitermes lucifugus Rossi, 1792)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044011-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn6533
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Indigofera circinella Baker f."
 ]
}

 The dataset includes 142 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144783-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lrzujp
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Vulpes corsac (Linnaeus, 1768)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047821-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.