cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1138755.10fu
title: SH1138755.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138761.10fu
title: SH1138761.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138762.10fu
title: SH1138762.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138770.10fu
title: SH1138770.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138773.10fu
title: SH1138773.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138775.10fu
title: SH1138775.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138776.10fu
title: SH1138776.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138779.10fu
title: SH1138779.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1138782.10fu
title: SH1138782.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3600443_d2.v1
title: Additional file 3: Table S3. of Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPTâ ˘) and standard density gradient

description: Comparison of gene expression of CD8+ T cells separated from PBMC isolated using CPT and Ficoll. A two-group comparison with permutation analysis for differential expression was performed, as described in Methods, on microarray data to identify differentially expressed genes between CD8+ T cells separated from CPT- and Ficoll-isolated PBMC. Probsets are ranked according to the FDR value. File format: CSV (CSV 26350 kb)
DOI: 10.6084/m9.figshare.c.3600443_d3.v1
title: Additional file 1: Table S1. of Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPTâ ˘) and standard density gradient

description: Comparison of gene expression of total PBMC isolated using CPT and Ficoll. A two-group comparison with permutation analysis for differential expression was performed, as described in Methods, on the microarray data to identify differentially expressed genes between PBMC isolated by the CPT and Ficoll methods. Probsets are ranked according to the FDR value. File format: CSV (CSV 26347 kb)
DOI: 10.6084/m9.figshare.c.3600446_d2.v1
title: Additional file 11: Table S9. of Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

description: Involved pathways after mapping of 5 % highest ranked genes from the gene association networks to the Reactome pathways. The pathways together with the mapped most important (5 % highest ranked) genes are inluded. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3600455_d1.v1
title: Additional file 4: of Peak shape clustering reveals biological insights

description: ChIP-seq data. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3600443_d4.v1
title: Additional file 4: Table S4. of Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPTâ ˘) and standard density gradient

description: Comparison of gene expression of CD14+ monocytes separated from PBMC isolated using CPT and Ficoll. A two-group comparison with permutation analysis for differential expression was performed, as described in Methods, on microarray data to identify differentially expressed genes between CD14+ monocytes separated from CPT- and Ficoll-isolated PBMC. Probsets are ranked according to the FDR value. (CSV 26353 kb)
DOI: 10.6084/m9.figshare.c.3600455_d2.v1
title: Additional file 2: of Peak shape clustering reveals biological insights

description: Random forest analysis. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3600458_d1.v1
title: MOESM1 of Comparison of intra-individual coefficients of variation on the paired sampling data when inter-individual variations are different between measures

description: Additional file 1. A list of the pain intensity data.
DOI: 10.17863/cam.82938
title: Raw Data: Intracellular Aβ42 aggregation leads to cellular thermogenesis

description: Raw data (.xlsx) for 'Intracellular Aβ42 aggregation leads to cellular thermogenesis' manuscript. Includes data for (i) FLIM measurements, (ii) ThT assay, (iii) dSTORM quantification, (iv) Seahorse assay, (v) molecular dynamics simulations.
DOI: 10.6084/m9.figshare.c.3600614_d2.v1
title: Additional file 2: of Risk of MERS importation and onward transmission: a systematic review and analysis of cases reported to WHO

description: The file contains timeline of attention from the three digital sources considered in the paper. (XLSX 40Â kb)
DOI: 10.17863/cam.20978
title: Research data supporting "Observation of a new B2 structured phase in Ti-15Mo (wt.%)"

description: Figure 1: Images 1a, 1b, 1c and 1d were originally acquired from a TEM using photographic paper. The digitally scanned negatives are included here as png image files. Figure 2 Images 2a, 2b and 2c were originally acquired from a TEM using photographic paper. The digitally scanned negatives are included here as png image files. Figure 3 Images 3a, 3b, 3c and 3d were acquired from a TEM using photographic paper. The digitally scanned negatives are included here as png image files. Figure 4 Images 4a, 4b and 4c were taken on a TEM using a CCD camera and are provided in png format. Figure 5 Images in Figure 5 were acquired using a STEM EDX system. Raw data and analysis is contained in the EDXdata.emi file and can be viewed using ESVISION software (license required). Figure 6 Images in Figure 6 were acquired using an ADF STEM dual EELS system. Figure 6a is given in Image6a. Raw EELS data is contained in the EELS Spectrum Image (high-loss).dm3 and EELS Spectrum Image (low-loss).dm3 files which can be opened using DigitalMicrograph (license required). Analysis run using Fig6_analysis.m MATLAB script (license required). Figure 7 Images 7a, 7b, 7c and 7d were taken on an aberration corrected STEM and given in png format. Figure 8 Figure 8a is Image8. Figure 8b and c are constructed from the Fourier transform of Image8. Figure 9 Figure 9a is Image9. Figure 9b-d are constructed from the Fourier transforms of Image8.
DOI: 10.15468/dl.h3fv8q
title: Occurrence Download

description: A dataset containing 9160416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.92749 14.75807,59.47527 14.75807,59.47527 32.7093,30.92749 32.7093,30.92749 14.75807))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Animalia, Plantae)"
 ]
}

 The dataset includes 9160416 records from 1111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037649-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600767_d1.v1
title: Additional file 3 of Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

description: Table of all results for the colon cancer data set. (TXT 5,710 kb)
DOI: 10.6084/m9.figshare.c.3600773_d1.v1
title: Additional file 2 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities

description: Differential expression analysis of genes. This Excel file contains differential expression analysis p values per gene per disease under different FDR corrections [i.e., Bonferroni, Benjamini–Yekutieli (BY), and Benjamini–Hochberg (BH)] as well as ‘no correction’. For presentation purposes, the genes that are not significant even under the ’no correction’ case, have been omitted. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3600764_d1.v1
title: Additional file 2: Table E9. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: Primer IDs for RT-PCR analysis. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3600767_d2.v1
title: Additional file 4 of Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

description: Table of all results for the breast cancer data set. (TXT 5,742 kb)
DOI: 10.17863/cam.9981
title: Research data supporting "Near-Field Optical Drilling of Sub-λ Pits in Thin Polymer Films"

description: see the figure captions in the paper
DOI: 10.6084/m9.figshare.c.3600764_d14.v1
title: Additional file 15: Table E10. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: Adjusted P-values for the significance indicators in Figure 2B. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3600845_d1.v1
title: Additional file 6: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Detail description of 66 experimentally validated BSP assays designed by MSP-HTPrimer. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3600845_d2.v1
title: Additional file 2: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Primer3 parameter input file. This is the parameter for Primer3 tools to design primer pairs. Users can change these parameters to optimize and better positioning of the primer pairs for target region. These parameters are directly supplied to Primer3 tool. (TXT 478 bytes)
DOI: 10.6084/m9.figshare.c.3600845_d3.v1
title: Additional file 1: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Target bed file (mandatory input file) to run primer design with MSP-HTPrimer. (TXT 74 bytes)
DOI: 10.6084/m9.figshare.c.3600764_d16.v1
title: Additional file 7: Table E3. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: ALL MADAD DEGs (FCH ≥ 2, FDR ≤ 0.05). (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3600845_d4.v1
title: Additional file 4: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Hierarchical selection quality matrix with ten quality levels ranking the designed primer independent of the Primer3 level. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3600764_d17.v1
title: Additional file 11: Table E6. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: IPA Pathways and GO terms IDD genes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3600845_d5.v1
title: Additional file 5: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: An MSP primer UCSC custom track in GTF format produced by MSP-HTPrimer for each target sequence in a separate file. (GTF 2 kb)
DOI: 10.15468/dl.cx8gv7
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Solidago canadensis L.",
 "Year 2022-2024"
 ]
}

 The dataset includes 271 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037670-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w76zee
title: Occurrence Download

description: A dataset containing 377982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Astragalus L."
 ]
}

 The dataset includes 377982 records from 1134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037663-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15243933
title: Data for article "The Impact of Education Expenditure on Economic Growth in Southeast Asia Region"
DOI: 10.5281/zenodo.15243934
title: Data for article "The Impact of Education Expenditure on Economic Growth in Southeast Asia Region"
DOI: 10.5286/isis.e.rb2510319-1
title: Topological excitation dynamics in the high-temperature ferromagnet Fe3GaTe2

description: Magnetic van der Waals systems are 2D crystals containing magnetic elements, and thus exhibit intrinsic low-dimensional magnetic properties. These cleavable materials provide a platform for exploring magnetism in the 2D limit, where a range of new phenomena are expected. The recent discovery of high-temperature ferromagnetism in Fe3GaTe2 at T &gt; 350 K has been a considerable boost to the study of van der Waals magnets, as has the suggestion that skyrmions can be stabilized under certain conditions at relatively high temperature. This material resembles the well-studied system Fe3GeTe2, but has a considerably higher transition temperature. As part of a project to investigate this, and related, systems, we propose muon measurements of its magnetic transitions, concentrating on the low-energy dynamics expected in their vicinity, along with those occurring at low temperature and in sizeable applied fields.
DOI: 10.5286/isis.e.rb2510319
title: Topological excitation dynamics in the high-temperature ferromagnet Fe3GaTe2

description: Magnetic van der Waals systems are 2D crystals containing magnetic elements, and thus exhibit intrinsic low-dimensional magnetic properties. These cleavable materials provide a platform for exploring magnetism in the 2D limit, where a range of new phenomena are expected. The recent discovery of high-temperature ferromagnetism in Fe3GaTe2 at T &gt; 350 K has been a considerable boost to the study of van der Waals magnets, as has the suggestion that skyrmions can be stabilized under certain conditions at relatively high temperature. This material resembles the well-studied system Fe3GeTe2, but has a considerably higher transition temperature. As part of a project to investigate this, and related, systems, we propose muon measurements of its magnetic transitions, concentrating on the low-energy dynamics expected in their vicinity, along with those occurring at low temperature and in sizeable applied fields.