cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15036188
title: Surface albedo impact on afforestation / reforestation carbon crediting projects

description: Purpose and usage

This dataset was created to analyse the impact of surface albedo change on afforestation/reforestation/revegetation carbon crediting projects.

The python code used to perform the analysis is available on Github.

Data description

Specific data

The two zip files 'project_geospatial_data.zip' and 'project_description_reports.zip' gather all the public documentation, extracted from Verra's registry, that were used in the study. 

The Excel file 'ARR_project_database.xlsx' contains all the specific data extracted to calculate the impact of surface albedo change. It presents the characteristics of each project as well as the treatment method to use the geospacial data files. See the tab #Read_me.

The following CSV are the one used to perform the calculation of the albedo impact:



proj_desc.csv : created from the tab #Desc_data in ARR_project_database.

geodata_layers.csv : created from the tab #Geospacial_data in ARR_project_database.

land_cover_type.csv : created from the tab #Land_cover_type in ARR_project_database.

albedo_proxy_table.csv : created from the analysis of the surface albedo dataset. A land cover type can be approximate by another land cover type if the absolute difference between both is less 0.03 for a same location. This table provides the results for a global scale and for the land cover type consistent with the study.


Global data

The surface albedo dataset is under embargo for upcoming publication [E-mail contact adress : kathryn.loog@polymtl.ca].

The radiative kernel dataset for albedo is the one developped by Huang & Huang, 2023 (ERA5_kernel_alb_TOA. DOI:10.17632/vmg3s67568.3). All the data consistent with the study are gathered in the zip file 'radiative_kernel.zip'.
DOI: 10.15468/dl.wvrgat
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sthenaridea carmelitana (Carvalho, 1948)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001433-250402121839773/datasets/export for details.
DOI: 10.15468/dl.dujmq9
title: Occurrence Download

description: A dataset containing 1823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scathophaga suilla (Fabricius, 1794)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1823 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001434-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fuda9r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Singhius hibisci (Kotinsky, 1907)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001435-250402121839773/datasets/export for details.
DOI: 10.15468/dl.6p9man
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Indocalamus tessellatus (Munro) Keng f."
 ]
}

 The dataset includes 58 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001432-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jsfqs
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-73.91957 40.91972,-73.96557 40.82418,-74.01637 40.75972,-74.02667 40.70196,-74.05413 40.65197,-74.08915 40.64989,-74.09876 40.6478,-74.13789 40.64416,-74.16124 40.64728,-74.17772 40.64728,-74.19351 40.64364,-74.20312 40.62748,-74.20518 40.61185,-74.19969 40.59986,-74.20724 40.58891,-74.21479 40.55709,-74.23333 40.5597,-74.24569 40.5524,-74.25049 40.54248,-74.24775 40.52265,-74.25804 40.51169,-74.26148 40.49916,-74.25942 40.48872,-74.22509 40.47566,-73.97861 40.51952,-73.9024 40.49081,-73.89279 40.5049,-73.80422 40.53152,-73.76234 40.53257,-73.75891 40.56179,-73.73351 40.58526,-73.74586 40.60611,-73.76852 40.61497,-73.76989 40.62488,-73.75067 40.63061,-73.74106 40.64624,-73.72252 40.64885,-73.72939 40.66656,-73.71771 40.71446,-73.69849 40.7488,-73.75067 40.7826,-73.77882 40.81015,-73.78088 40.82574,-73.75754 40.84496,-73.74724 40.87197,-73.91957 40.91972))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vincetoxicum nigrum (L.) Moench"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001438-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgsqx9
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bagarius bagarius (Hamilton, 1822)"
 ]
}

 The dataset includes 281 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001440-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkqmy9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus qinzhouicus C.C.Huang & Y.T.Chang"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001439-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2yu43
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Indocalamus bashanensis (C.D.Chu & C.S.Chao) H.R.Zhao & Y.L.Yang"
 ]
}

 The dataset includes 54 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001442-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3pezz
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus quercifolius C.C.Huang & Y.T.Chang"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001441-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7e4f36
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus shunningensis Hu"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001443-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzu6ru
title: Occurrence Download

description: A dataset containing 834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Germany, Finland, Netherlands, Austria, Poland)",
 "TaxonKey is Crossocerus cinxius (Dahlbom, 1839)"
 ]
}

 The dataset includes 834 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018634-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2kyrr
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sicyos edulis Jacq.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 725 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018635-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaca72
title: Occurrence Download

description: A dataset containing 8847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer negundo L."
 ]
}

 The dataset includes 8847 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018636-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czfred
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Dolichurus corniculus (Spinola, 1807)"
 ]
}

 The dataset includes 88 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018638-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygyw6w
title: Occurrence Download

description: A dataset containing 100728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "TaxonKey is Pipistrellus pipistrellus (Schreber, 1774)",
 "Year 2020-2025"
 ]
}

 The dataset includes 100728 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018624-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4tveb
title: Occurrence Download

description: A dataset containing 627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neltuma pallida (Humb. & Bonpl. ex Willd.) C.E.Hughes & G.P.Lewis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 627 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018639-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m939jt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Incamyia cuzcensis Townsend, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018640-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqv382
title: Occurrence Download

description: A dataset containing 3795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Camphora officinarum Nees",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3795 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018641-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15057700
title: Use of Artificial Intelligence and Chatgpt-4 in the Diagnosis of Femur-Pertrochanteric Fractures
DOI: 10.5281/zenodo.15057701
title: Use of Artificial Intelligence and Chatgpt-4 in the Diagnosis of Femur-Pertrochanteric Fractures
DOI: 10.15468/dl.zr5kgz
title: Occurrence Download

description: A dataset containing 142767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is one of (USA.24.27_1, USA.24.2_1, USA.24.63_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Plantae, Insecta)"
 ]
}

 The dataset includes 142767 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018637-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58ttm5
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysalidocarpus lutescens H.Wendl.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 81 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018643-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkwwt6
title: Occurrence Download

description: A dataset containing 491821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is TUR.40_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 491821 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018628-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.q6jyh3
title: Spatiotemporal Shifts in the Richness and Composition of Mountain Frogs in a Global Biodiversity Hotspot in Southwest China

description: Records used in [paper](https://doi.org/10.3724/ahr.2095-0357.2024.0024) (dn)
DOI: 10.15468/dl.mhjpkg
title: Occurrence Download

description: A dataset containing 2048 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Laboulbeniomycetes (Fungi, Ascomycota) of Denmark"
 ]
}

 The dataset includes 2048 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018644-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cjzka
title: Occurrence Download

description: A dataset containing 456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Africa, Antarctica, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Telescopium telescopium (Linnaeus, 1758)",
 "Year 1900-2023"
 ]
}

 The dataset includes 456 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174217-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14732560
title: Test data and model for the FlowCam data processing pipeline

description: Testing data for the processing pipeline for FlowCam data 

The data are fully processed but can be used to test each pipeline component. You can download the scripts at <github> and LabelChecker <here>

Pipeline scripts

To use the model, unzip the freshwater_phytoplankton_model.zip and place the folder in the respective model folder in the services. 



|--services
    |-- ProcessData.py
    |-- config.py
    |--  classification        |-- ObjectClassification            |-- models                |-- <paste here>            |-- ...    |-- ...|-- ...


Once you unzip the data.zip file, each folder corresponds to the data export of a FlowCam run. You have the TIF collage files, a CSV file with the sample name containing all the parameters measured by the FlowCam, and a LabelChecker_<sample> CSV file generated by the preprocessing.py script. 

You can run the preprocessing.py script directly on the files by including the -R (reprocess) argument. Otherwise you can do it by removing the LabelChecker CSV from the folders. The PreprocessingTrue column will remain the same.

When running the classification.py script you can get new predictions on the data. In this case, only the LabelPredicted column will be updated and the validated labels (LabelTrue column) will not be lost. 

You could also use these files to try out the train_model.ipynb, although the resulting model will not be very good with so little data. We recommend trying it with your own data. 

LabelChecker

These files can be used to test LabelChecker. You can open them one by one or all together and try all functionalities. We provide a label_file.csv but you can also make your own.
DOI: 10.5281/zenodo.14755172
title: Test data and model for the FlowCam data processing pipeline

description: Testing data for the processing pipeline for FlowCam data 

The data are fully processed but can be used to test each pipeline component. You can download the scripts at <github> and LabelChecker <here>

Pipeline scripts

To use the model, unzip the freshwater_phytoplankton_model.zip and place the folder in the respective model folder in the services. 



|--services
    |-- ProcessData.py
    |-- config.py
    |--  classification        |-- ObjectClassification            |-- models                |-- <paste here>            |-- ...    |-- ...|-- ...


Once you unzip the data.zip file, each folder corresponds to the data export of a FlowCam run. You have the TIF collage files, a CSV file with the sample name containing all the parameters measured by the FlowCam, and a LabelChecker_<sample> CSV file generated by the preprocessing.py script. 

You can run the preprocessing.py script directly on the files by including the -R (reprocess) argument. Otherwise you can do it by removing the LabelChecker CSV from the folders. The PreprocessingTrue column will remain the same.

When running the classification.py script you can get new predictions on the data. In this case, only the LabelPredicted column will be updated and the validated labels (LabelTrue column) will not be lost. 

You could also use these files to try out the train_model.ipynb, although the resulting model will not be very good with so little data. We recommend trying it with your own data. 

LabelChecker

These files can be used to test LabelChecker. You can open them one by one or all together and try all functionalities. We provide a label_file.csv but you can also make your own.
DOI: 10.15468/dl.xbcwhm
title: Occurrence Download

description: A dataset containing 8982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Circus cyaneus (Linnaeus, 1766)",
 "Year 1975-2025"
 ]
}

 The dataset includes 8982 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018646-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvmjux
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diachasmimorpha longicaudata (Ashmead, 1905)"
 ]
}

 The dataset includes 175 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018649-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54m7gs
title: Occurrence Download

description: A dataset containing 9213 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Burkina Faso",
 "Country is Benin",
 "Country is Guinea",
 "Country is Côte d’Ivoire",
 "Country is Ghana",
 "Country is Niger",
 "Country is Togo",
 "Country is Mali",
 "Country is Mauritania",
 "Country is Nigeria",
 "Country is Senegal",
 "Country is Gambia",
 "Country is Liberia",
 "Country is Sierra Leone"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Phoenix reclinata Jacq.",
 "TaxonKey is Borassus akeassii Bayton, Ouédr. & Guinko",
 "TaxonKey is Borassus aethiopum Mart.",
 "TaxonKey is Raphia sudanica A.Chev.",
 "TaxonKey is Elaeis guineensis subsp. nigrescens A.Chev.",
 "TaxonKey is Elaeis guineensis Jacq.",
 "TaxonKey is Calamus deerratus G.Mann & H.Wendl.",
 "TaxonKey is Hyphaene thebaica (L.) Mart."
 ]
 }
 ]
}

 The dataset includes 9213 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008672-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zxdz2
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aleochara verna Say, 1833",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 433 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018650-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/3cmq-pe9p
title: Measurement of Sulphur_dioxide at Doñana

description: Measurement of Sulphur_dioxide at Doñana
DOI: 10.48597/5t9c-fzus
title: Measurement of Sulphur_dioxide at Els Torms

description: Measurement of Sulphur_dioxide at Els Torms
DOI: 10.48597/75wm-79b8
title: Measurement of Sulphur_dioxide at Barcarrota

description: Measurement of Sulphur_dioxide at Barcarrota
DOI: 10.48597/bpe9-67vs
title: Measurement of Sulphur_dioxide at Cabo de Creus

description: Measurement of Sulphur_dioxide at Cabo de Creus
DOI: 10.48597/hc9j-qgrz
title: Measurement of Sulphur_dioxide at Campisabalos

description: Measurement of Sulphur_dioxide at Campisabalos
DOI: 10.48597/hvw2-geq7
title: Measurement of Sulphur_dioxide at Zarra

description: Measurement of Sulphur_dioxide at Zarra
DOI: 10.48597/j4n6-9q43
title: Measurement of Sulphur_dioxide at Mahón

description: Measurement of Sulphur_dioxide at Mahón
DOI: 10.48597/qaba-9sed
title: Measurement of Sulphur_dioxide at Víznar

description: Measurement of Sulphur_dioxide at Víznar
DOI: 10.48597/tnex-wqdz
title: Measurement of Sulphur_dioxide at Noia

description: Measurement of Sulphur_dioxide at Noia
DOI: 10.48597/wmm8-d4u6
title: Measurement of Sulphur_dioxide at Niembro

description: Measurement of Sulphur_dioxide at Niembro