cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7066583
title: tave.0000315360.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus. This contains temperature and current velocities for simulation year 2007.
DOI: 10.6084/m9.figshare.7066583.v1
title: tave.0000315360.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus. This contains temperature and current velocities for simulation year 2007.
DOI: 10.6084/m9.figshare.7066553
title: ptr_tave.0000631152.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2009. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066571.v1
title: ptr_tave.0000788832.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2010. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066544
title: IFI and Black Aurora

description: The archive contains images, the executable core, files needed to run the code, and the results from the simulations described in the article "On the Asymmetry Between Upward and Downward Field-Aligned Currents Interacting with the Ionosphere" submitted to JGR.<br>
DOI: 10.6084/m9.figshare.7066544.v1
title: IFI and Black Aurora

description: The archive contains images, the executable core, files needed to run the code, and the results from the simulations described in the article "On the Asymmetry Between Upward and Downward Field-Aligned Currents Interacting with the Ionosphere" submitted to JGR.<br>
DOI: 10.6084/m9.figshare.7066538
title: ptr_tave.0000473040.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2008. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066553.v1
title: ptr_tave.0000631152.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2009. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066538.v1
title: ptr_tave.0000473040.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2008. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066520
title: ptr_tave.0000315360.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2007. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066520.v1
title: ptr_tave.0000315360.glob.nc.tar.gz

description: 3D model output from MITgcm-Michigan-phosphorus for simulation year 2007. This contains phosphorus concentration in the lake associated with 11 rivers.
DOI: 10.6084/m9.figshare.7066487
title: Host specified Campylobacter genomes

description: Incomplete genomes used to create the 'Phasome of host associated Campylobacters' files.<br>
DOI: 10.6084/m9.figshare.7066487.v1
title: Host specified Campylobacter genomes

description: Incomplete genomes used to create the 'Phasome of host associated Campylobacters' files.<br>
DOI: 10.6084/m9.figshare.7066475
title: Campylobacter phasome analysis, generated by PhasomeIt

description: Output of PhasomeIt from analysis of 77 Campylobacter genomes. Archive must be unzipped to view, as it is composed of multiple files in HTML5 format, viewable on any modern browser with JavaScript active.<br><br>Datafiles show camparison of potential PV genes across Campylobacter species allowing comparison and detailed examination.<br>
DOI: 10.6084/m9.figshare.7066484
title: Phasome analysis of host specified Campylobacter isolate, generated by PhasomeIt

description: Output of PhasomeIt from analysis of host associated Campylobacter isolates. Archive must be unzipped to view, as it is composed of multiple files in HTML5 format, viewable on any modern browser with JavaScript active.<br><br>Datafiles show camparison of potential PV genes across Campylobacter species allowing comparison and detailed examination.
DOI: 10.6084/m9.figshare.7066484.v1
title: Phasome analysis of host specified Campylobacter isolate, generated by PhasomeIt

description: Output of PhasomeIt from analysis of host associated Campylobacter isolates. Archive must be unzipped to view, as it is composed of multiple files in HTML5 format, viewable on any modern browser with JavaScript active.<br><br>Datafiles show camparison of potential PV genes across Campylobacter species allowing comparison and detailed examination.
DOI: 10.6084/m9.figshare.7066397
title: 2018 Database of Effect Sizes (ES)

description: The database contains 18 fields:- xmlfile: identification of the xmlfile from which the ES was extracted.- id: a unique identifier of extracted ES within a given xmlfile.- pmid: the PMID identifier of the abstract from which ES were extracted. - year: year of publication of the abstract.- month: month of publication of the abstract.- or: value of the ES (T#0).- lci: value of the lower part of the confidence interval.- hci: value of the higher part of the confidence interval.- orhrrr: classification of the type of ES (OR, HR, RR and PR). PR was considered as OR at the step of the statistical script.- ci: type of confidence interval (90%, 95% or 99%). If no CI was provided, 95% was assumed at the step of the statistical script.- counteies: continents extracted from author’s affiliations, using MapAfill and text mining (pipe ‘|’ delimited)- adjusted: 1 if an adjusted ES was detected (e.g. adjusted OR, aOR), 0 otherwise.- multivariate: 1 if a multivariate analysis was found within abstract, 0 otherwise.- sr: 1 if the abstract was a “Review” (review, systematic review or meta-analysis), 0 otherwise.- ccj: 1 if the journal was found within the Core Clinical Journals list, 0 otherwise.- doaj: 1 if the journal was found within the Directory of Open Access Journals, 0 otherwise. - pmc: PubMed Central identifier, if exists.- nlm: unique identifier of the journal abstract.
DOI: 10.6084/m9.figshare.7066397.v1
title: The progressive substitution of Hazard Ratios for Relative Risks in biomedical research

description: The database contains 18 fields:- xmlfile: identification of the xmlfile from which the ES was extracted.- id: a unique identifier of extracted ES within a given xmlfile.- pmid: the PMID identifier of the abstract from which ES were extracted. - year: year of publication of the abstract.- month: month of publication of the abstract.- or: value of the ES (T#0).- lci: value of the lower part of the confidence interval.- hci: value of the higher part of the confidence interval.- orhrrr: classification of the type of ES (OR, HR, RR and PR). PR was considered as OR at the step of the statistical script.- ci: type of confidence interval (90%, 95% or 99%). If no CI was provided, 95% was assumed at the step of the statistical script.- counteies: continents extracted from author’s affiliations, using MapAfill and text mining (pipe ‘|’ delimited)- adjusted: 1 if an adjusted ES was detected (e.g. adjusted OR, aOR), 0 otherwise.- multivariate: 1 if a multivariate analysis was found within abstract, 0 otherwise.- sr: 1 if the abstract was a “Review” (review, systematic review or meta-analysis), 0 otherwise.- ccj: 1 if the journal was found within the Core Clinical Journals list, 0 otherwise.- doaj: 1 if the journal was found within the Directory of Open Access Journals, 0 otherwise. - pmc: PubMed Central identifier, if exists.- nlm: unique identifier of the journal abstract.
DOI: 10.6084/m9.figshare.7066382.v1
title: List of M. oryzae orthologs to N. crassa SPA proteins

description: Finding orthologs to <i>Neurospora crassa</i> Septal Pore-Associated SPA proteins Reference https://doi.org/10.1073/pnas.1207467109<b></b>
DOI: 10.6084/m9.figshare.7066397.v2
title: The progressive substitution of Hazard Ratios for Relative Risks in biomedical research

description: The database contains 18 fields:- xmlfile: identification of the xmlfile from which the ES was extracted.- id: a unique identifier of extracted ES within a given xmlfile.- pmid: the PMID identifier of the abstract from which ES were extracted. - year: year of publication of the abstract.- month: month of publication of the abstract.- or: value of the ES (T#0).- lci: value of the lower part of the confidence interval.- hci: value of the higher part of the confidence interval.- orhrrr: classification of the type of ES (OR, HR, RR and PR). PR was considered as OR at the step of the statistical script.- ci: type of confidence interval (90%, 95% or 99%). If no CI was provided, 95% was assumed at the step of the statistical script.- counteies: continents extracted from author’s affiliations, using MapAfill and text mining (pipe ‘|’ delimited)- adjusted: 1 if an adjusted ES was detected (e.g. adjusted OR, aOR), 0 otherwise.- multivariate: 1 if a multivariate analysis was found within abstract, 0 otherwise.- sr: 1 if the abstract was a “Review” (review, systematic review or meta-analysis), 0 otherwise.- ccj: 1 if the journal was found within the Core Clinical Journals list, 0 otherwise.- doaj: 1 if the journal was found within the Directory of Open Access Journals, 0 otherwise. - pmc: PubMed Central identifier, if exists.- nlm: unique identifier of the journal abstract.
DOI: 10.6084/m9.figshare.7066331
title: MOESM6 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 6. The abundance heat map of gene function prediction.
DOI: 10.6084/m9.figshare.7066379.v1
title: List of proteins with unfolding motif according to (Zetina 2001) found for M. oryzae using the FIMO tool

description: Proteins with a Cka phosphorylation MEME motif that can potentially unfold alpha helixes was searched for using the FIMO tool at http://meme-suite.org/
DOI: 10.6084/m9.figshare.7066328
title: MOESM5 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 5. The diversity of community.
DOI: 10.6084/m9.figshare.7066331.v1
title: MOESM6 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 6. The abundance heat map of gene function prediction.
DOI: 10.6084/m9.figshare.7066325
title: MOESM4 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 4. Sample information after QC.
DOI: 10.6084/m9.figshare.7066328.v1
title: MOESM5 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 5. The diversity of community.
DOI: 10.6084/m9.figshare.7066325.v1
title: MOESM4 of The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam

description: Additional file 4. Sample information after QC.
DOI: 10.6084/m9.figshare.7065929
title: 482A9071.CR2

description: test test test test
DOI: 10.6084/m9.figshare.7065929.v1
title: 482A9071.CR2

description: test test test test
DOI: 10.6084/m9.figshare.7064774.v1
title: Supplement.tex

description: This document provides supplementary information to “Coherent detection with an incoherent local os- cillator," giving the MatLab code that implements the algorithm for signal reconstruction.
DOI: 10.6084/m9.figshare.7064768
title: inputs_2008.tar.gz

description: This file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2008.
DOI: 10.6084/m9.figshare.7064765
title: inputs_2010.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2010.
DOI: 10.6084/m9.figshare.7064768.v2
title: inputs_2008.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2008.
DOI: 10.6084/m9.figshare.7064768.v1
title: inputs_2008.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2008.
DOI: 10.6084/m9.figshare.7064765.v1
title: inputs_2010.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2010.
DOI: 10.6084/m9.figshare.7064765.v3
title: inputs_2010.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2010.
DOI: 10.6084/m9.figshare.7064765.v2
title: inputs_2010.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2010.
DOI: 10.6084/m9.figshare.7064759
title: inputs_2009.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2009.
DOI: 10.6084/m9.figshare.7064549
title: Figures and Supplementary Data

description: Figures and Supplementary data for GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts. <br>
DOI: 10.6084/m9.figshare.7064759.v2
title: inputs_2009.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2009.
DOI: 10.6084/m9.figshare.7064522
title: inputs_2007.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2007.
DOI: 10.6084/m9.figshare.7064549.v1
title: Figures and Supplementary Data

description: Figures and Supplementary data for GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts. <br>
DOI: 10.6084/m9.figshare.7064759.v1
title: inputs_2009.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2009.
DOI: 10.6084/m9.figshare.7064522.v1
title: inputs_2007.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2007.
DOI: 10.6084/m9.figshare.7064516
title: Scripts Directory

description: Scripts used to produce results for this manuscript. View the README.md for more information.
DOI: 10.6084/m9.figshare.7064522.v3
title: inputs_2007.tar.gz

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2007.
DOI: 10.6084/m9.figshare.7064522.v2
title: inputs_2007.zip

description: This zip file contains binary inputs to run MITgcm-Michigan-Phosphorus for simulation year 2007.
DOI: 10.6084/m9.figshare.7064513
title: ITP of chitosan

description: ITP file of chitosan using SwissParam and charges from gbasis MINI for free energy calculations in water.
DOI: 10.6084/m9.figshare.7064510
title: ITP of quercetin

description: ITP file from quercetin using SwissParam and charges from gbasis MINI for free energy calculations in water.
DOI: 10.6084/m9.figshare.7064495
title: S1 Appendix

description: Population attributable risk (PAR) was calculated from the Brazilian prevalence of diabetes and the relative risk (or odds ratio) of persons with diabetes developing CKD and ESKD as compared to non-diabetic subjects. The variables of interest were sex, race/skin color, and age. A top-down approach was used to measure the direct costs of the disease reimbursed by the Brazilian Ministry of Health, using data from outpatient and inpatient records. <br>
DOI: 10.6084/m9.figshare.7064486
title: A dipteran larva-pitcher plant digestive mutualism is dependent on prey resource digestibility

description: Data for Leong FWS, Lam WN, Tan HTW. 2018. A dipteran larva-pitcher plant digestive mutualism is dependent on prey resource digestibility. Oecologia<br>1) PUPATION dataData of pupation success and date of each inquiline used in the experiments of the cited study<br>2) PLANT dataData of total pitcher-available nitrogen in each tube in the experiments of the cited study
DOI: 10.6084/m9.figshare.7064486.v2
title: A dipteran larva-pitcher plant digestive mutualism is dependent on prey resource digestibility

description: Data for Leong FWS, Lam WN, Tan HTW. 2018. A dipteran larva-pitcher plant digestive mutualism is dependent on prey resource digestibility. Oecologia<br>1) PUPATION dataData of pupation success and date of each inquiline used in the experiments of the cited study<br>2) PLANT dataData of total pitcher-available nitrogen in each tube in the experiments of the cited study
DOI: 10.6084/m9.figshare.7064486.v1
title: PUPATION data.csv

description: Data for Leong FWS, Lam WN, Tan HTW. 2018. A dipteran larva-pitcher plant digestive mutualism is dependent on prey resource digestibility. Oecologia<br>1) PUPATION dataData of pupation success and date of each inquiline used in the experiments of the cited study<br>2) PLANT dataData of total pitcher-available nitrogen in each tube in the experiments of the cited study
DOI: 10.6084/m9.figshare.7064495.v1
title: S1 Appendix

description: Population attributable risk (PAR) was calculated from the Brazilian prevalence of diabetes and the relative risk (or odds ratio) of persons with diabetes developing CKD and ESKD as compared to non-diabetic subjects. The variables of interest were sex, race/skin color, and age. A top-down approach was used to measure the direct costs of the disease reimbursed by the Brazilian Ministry of Health, using data from outpatient and inpatient records. <br>
DOI: 10.6084/m9.figshare.7064495.v3
title: S1 Appendix

description: Population attributable risk (PAR) was calculated from the Brazilian prevalence of diabetes and the relative risk (or odds ratio) of persons with diabetes developing CKD and ESKD as compared to non-diabetic subjects. The variables of interest were sex, race/skin color, and age. A top-down approach was used to measure the direct costs of the disease reimbursed by the Brazilian Ministry of Health, using data from outpatient and inpatient records. <br>
DOI: 10.6084/m9.figshare.7064495.v2
title: S1 Appendix

description: Population attributable risk (PAR) was calculated from the Brazilian prevalence of diabetes and the relative risk (or odds ratio) of persons with diabetes developing CKD and ESKD as compared to non-diabetic subjects. The variables of interest were sex, race/skin color, and age. A top-down approach was used to measure the direct costs of the disease reimbursed by the Brazilian Ministry of Health, using data from outpatient and inpatient records. <br>
DOI: 10.6084/m9.figshare.7064432
title: Application of Machine Learning in Package Holiday Selling Price Prediction

description: This report looks at the statistical relationships between the price a holiday is historically sold for and the features of a holiday. From that analysis it demonstrates the application of machine learning in holiday selling price prediction and recommendation. The Author uses a Random Forest Regressor combined with Cross Validation Hyper Parameter Tuning to create a proof of concept for a Package Holiday Selling Price Recommender System.
DOI: 10.6084/m9.figshare.7064420
title: Dataset_Cursive.sav

description: <pre>Growth models on pre-, post- and follow-up measures showed that performance on tasks involving the prerequisites and skills of writing and reading were better overall among the children in the intervention group as compared to those of the control group.<br></pre>
DOI: 10.6084/m9.figshare.7064414
title: ATG5 is required for B cell polarization and presentation of particulate antigens

description: The involvement of macroautophagy/autophagy proteins in B-cell receptor (BCR) trafficking, although suspected, is not well understood. We show that ATG5 (autophagy related 5) contributes to BCR polarization after stimulation and internalization into LAMP1 (lysosomal-associated membrane protein 1)<sup>+</sup> and major histocompatibility complex class II (MHC-II)<sup>+</sup> compartments. BCR polarization is crucial in the context of immobilized antigen processing. Moreover, antigen presentation to cognate T cells is decreased in the absence of ATG5 when the model antigen OVAL/ovalbumin is provided in an immobilized form in contrast to the normal presentation of soluble OVAL. We further show that ATG5 is required for centrosome polarization and actin nucleation in the immune synapse area. This event is accompanied by an increased interaction between ATG16L1 (autophagy related 16-like 1 [<i>S. cerevisiae</i>]) and the microtubule-organizing center-associated protein PCM1 (pericentriolar material 1). In the human B cell line BJAB, PCM1 is required for BCR polarization after stimulation. We thus propose that the ATG12 (autophagy related 12)–ATG5-ATG16L1 complex under BCR stimulation allows its interaction with PCM1 and consequently facilitates centrosome relocalization to the immune synapse, optimizing the presentation of particulate antigens. <b>Abbreviations:</b> ACTB: actin beta; ACTR2/3: ARP2/3 actin-related protein 2/3; APC: antigen-presenting cells; ATG: autophagy-related; BCR: B cell receptor; BECN1/Beclin 1: beclin 1, autophagy related; CDC42: cell division cycle 42; Cr2: complement receptor 2; CSFE: carboxyfluorescein succinimidyl ester; DAPI: 4ʹ,6-diamidino-2-phenylindole dihydrochloride; EEA1: early endosome antigen 1; ELISA: enzyme-linked immunosorbent assay; FITC: fluorescein isothyocyanate; GC: germinal center; GJA1/CX3: gap junction protein, alpha 1; Ig: immunoglobulin; LAMP1: lysosomal-associated membrane protein 1; LAP: LC3-associated phagocytosis; LM: littermate; MAP1LC3/LC3: microtubule-associated protein 1 light chain 3; MAPK/ERK: mitogen activated protein kinase; MHC-II: major histocompatibility complex class II; MIIC: MHC class II compartment; OVAL: ovalbumin; PBS: phosphate-buffered saline; PCM1: pericentriolar material 1; PtdIns3K: phosphatidylinositol 3-kinase; PTPRC/CD45RB/B220; Protein tyrosine phosphatase, receptor type, C; SYK: spleen tyrosine kinase; TBS: Tris-buffered saline; TCR: T cell receptor; ULK1: unc-51 like kinase 1