cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e5zvjg
title: Occurrence Download

description: A dataset containing 431062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iris pseudacorus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 431062 records from 937 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0300890-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpgbv9
title: Occurrence Download

description: A dataset containing 3806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matthiola incana (L.) W.T.Aiton",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3806 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264135-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11877613
title: SASDM75 – Ras-like protein 1 guanine nucleotide exchange factor region of Candida albicans cell division control protein 25
DOI: 10.5281/zenodo.11877614
title: SASDM75 – Ras-like protein 1 guanine nucleotide exchange factor region of Candida albicans cell division control protein 25
DOI: 10.15468/dl.pq9qg7
title: Occurrence Download

description: A dataset containing 8289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex rotundata Wahlenb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8289 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415484-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qayssx
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parvotrisetum myrianthum (Bertol.) Chrtek",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183900-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3ukzu
title: Occurrence Download

description: A dataset containing 139334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bistorta vivipara (L.) Delarbre",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 139334 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257327-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0167151.10fu
title: SH0167151.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0167152.10fu
title: SH0167152.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0167153.10fu
title: SH0167153.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0167154.10fu
title: SH0167154.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/52km8kd4n2
title: Monitoring dolphinfish catches and diel assemblage fluctuations using eDNA at Fish Aggregating Devices

description: Fish Aggregating Devices (FADs) are man-made objects designed to attract fish, with the aim of facilitating spatially heterogeneous aggregations of marine species. These objects influence the structure of pelagic fisheries, consequently affecting fish distributions and interactions. One of the most iconic epipelagic species targeted using FADs is dolphinfish (Coryphaena hippurus), which has high commercial value in the Mediterranean Sea. However, the interactions between dolphinfish and FADs are still poorly understood, and the composition of fish assemblages attracted to these devices remains poorly characterized. Environmental DNA (eDNA) metabarcoding has emerged as a powerful tool for fisheries management. Here, we employed passive eDNA samplers (i.e., metaprobes) to collect information on the fish assemblages around five FADs in Maltese waters during a dolphinfish fishing day in January 2023. Samples were gathered during different diel phases: three stations were sampled in the diurnal phase, while two were sampled during the crepuscular-evening phase. Through the amplification of the mitochondrial 12S gene region (Elas02 primers), we explored the relationship between C. hippurus caught biomass (kg) and transformed read counts, and investigated the composition of fish assemblages associated with FADs. A positive relationship was found between eDNA transformed read counts of dolphinfish and their biomass (linear regression model, R2 = 0.62, p &lt; 0.05). Fish assemblages attracted by FADs were found to significantly change between diurnal and crepuscular-evening phases. Moreover, the Indicator Species Analysis identified four species as being indicative of the crepuscular-evening phase (D. rafinesquii, H. benoiti, H. hygomii and L. pusillus). The SIMPER test identified seven species as the main contributors to variations in dolphinfish caught biomass. Of these, four species (S. pilchardus, T. trachurus, E. encrasicolus and C. labrosus) showed a significant relationship between their transformed read counts and dolphinfish caught biomass. Despite the small number of samples, this study highlighted the potential of low-cost passive eDNA collection to assess the composition of pelagic fish assemblages around FADs. This improves our understanding of the ecological dynamics around these fishing gears and helps to optimise fishing efficiency, thereby promoting sustainable fisheries management strategies.
DOI: 10.15156/bio/sh0167155.10fu
title: SH0167155.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.31036041
title: Dietary polysaccharides extract from <i>Spirulina platensis</i>: a natural alternative for enhancing broiler performance and antioxidation status

description: 1. The demand for natural alternatives to antibiotic growth promoters in poultry has led to growing interest in bioactive compounds, such as polysaccharides derived from algae. This study evaluated the effects of algae (<i>Spirulina platensis</i>)-derived polysaccharides (ADP) on growth performance, blood profiles, carcase characteristics, meat quality, amino acid composition and antioxidant status in broilers. 2. A total of 320, 1-d-old Ross 308 mixed-sex broilers were randomly allocated to one of the five dietary treatments; a control diet (0% ADP) and diets supplemented with 0.15%, 0.30%, 0.45% and 0.60% of ADP. Each treatment included four replicates containing 16 birds each. The feeding trial was conducted over 42 d and was divided into three phases, including starter (1–14 d), grower (15–28 d) and finisher (29–42 d). 3. Dietary inclusion of ADP at 0.30% significantly improved body weight gain and feed conversion ratio during the finisher (1.77 kg and 1.71, respectively) and overall (2.82 kg and 1.56, respectively) periods. There were no adverse effects observed on haematological, serum biochemistry or carcase characteristics. 4. Supplementation with 0.45–0.60% ADP reduced cooking loss to 34–40% and improved meat cohesiveness by about 5%. Its inclusion elevated the levels of key amino acids, such as threonine, histidine, isoleucine, arginine and glutamic acid in the breast muscle. Additionally, ADP linearly increased hepatic antioxidant enzyme activities, including total superoxide dismutase (317.60–337.12 U/mg protein), glutathione peroxidase (39.98–48.70 U/mg protein), catalase (7.09–7.71 U/mg protein) and decreased malondialdehyde concentrations (0.63–0.68 nmol/mg protein) demonstrating enhanced oxidative status. These improvements were attributed to the prebiotic and antioxidant properties of <i>Spirulina</i>-derived polysaccharides, which enhance nutrient utilisation, maintain gut integrity and strengthen redox balance. 5. This study provides preliminary evidence that polysaccharides derived from <i>S. platensis</i>, particularly at 0.30–0.45%, can be used as safe and effective feed additives in broiler diets. These compounds have the potential to enhance performance, oxidative stability and certain aspects of meat quality without adverse effects.
DOI: 10.6084/m9.figshare.31036041.v1
title: Dietary polysaccharides extract from <i>Spirulina platensis</i>: a natural alternative for enhancing broiler performance and antioxidation status

description: 1. The demand for natural alternatives to antibiotic growth promoters in poultry has led to growing interest in bioactive compounds, such as polysaccharides derived from algae. This study evaluated the effects of algae (<i>Spirulina platensis</i>)-derived polysaccharides (ADP) on growth performance, blood profiles, carcase characteristics, meat quality, amino acid composition and antioxidant status in broilers. 2. A total of 320, 1-d-old Ross 308 mixed-sex broilers were randomly allocated to one of the five dietary treatments; a control diet (0% ADP) and diets supplemented with 0.15%, 0.30%, 0.45% and 0.60% of ADP. Each treatment included four replicates containing 16 birds each. The feeding trial was conducted over 42 d and was divided into three phases, including starter (1–14 d), grower (15–28 d) and finisher (29–42 d). 3. Dietary inclusion of ADP at 0.30% significantly improved body weight gain and feed conversion ratio during the finisher (1.77 kg and 1.71, respectively) and overall (2.82 kg and 1.56, respectively) periods. There were no adverse effects observed on haematological, serum biochemistry or carcase characteristics. 4. Supplementation with 0.45–0.60% ADP reduced cooking loss to 34–40% and improved meat cohesiveness by about 5%. Its inclusion elevated the levels of key amino acids, such as threonine, histidine, isoleucine, arginine and glutamic acid in the breast muscle. Additionally, ADP linearly increased hepatic antioxidant enzyme activities, including total superoxide dismutase (317.60–337.12 U/mg protein), glutathione peroxidase (39.98–48.70 U/mg protein), catalase (7.09–7.71 U/mg protein) and decreased malondialdehyde concentrations (0.63–0.68 nmol/mg protein) demonstrating enhanced oxidative status. These improvements were attributed to the prebiotic and antioxidant properties of <i>Spirulina</i>-derived polysaccharides, which enhance nutrient utilisation, maintain gut integrity and strengthen redox balance. 5. This study provides preliminary evidence that polysaccharides derived from <i>S. platensis</i>, particularly at 0.30–0.45%, can be used as safe and effective feed additives in broiler diets. These compounds have the potential to enhance performance, oxidative stability and certain aspects of meat quality without adverse effects.
DOI: 10.15156/bio/sh0167156.10fu
title: SH0167156.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/52km8kd4n2.1
title: Monitoring dolphinfish catches and diel assemblage fluctuations using eDNA at Fish Aggregating Devices

description: Fish Aggregating Devices (FADs) are man-made objects designed to attract fish, with the aim of facilitating spatially heterogeneous aggregations of marine species. These objects influence the structure of pelagic fisheries, consequently affecting fish distributions and interactions. One of the most iconic epipelagic species targeted using FADs is dolphinfish (Coryphaena hippurus), which has high commercial value in the Mediterranean Sea. However, the interactions between dolphinfish and FADs are still poorly understood, and the composition of fish assemblages attracted to these devices remains poorly characterized. Environmental DNA (eDNA) metabarcoding has emerged as a powerful tool for fisheries management. Here, we employed passive eDNA samplers (i.e., metaprobes) to collect information on the fish assemblages around five FADs in Maltese waters during a dolphinfish fishing day in January 2023. Samples were gathered during different diel phases: three stations were sampled in the diurnal phase, while two were sampled during the crepuscular-evening phase. Through the amplification of the mitochondrial 12S gene region (Elas02 primers), we explored the relationship between C. hippurus caught biomass (kg) and transformed read counts, and investigated the composition of fish assemblages associated with FADs. A positive relationship was found between eDNA transformed read counts of dolphinfish and their biomass (linear regression model, R2 = 0.62, p &lt; 0.05). Fish assemblages attracted by FADs were found to significantly change between diurnal and crepuscular-evening phases. Moreover, the Indicator Species Analysis identified four species as being indicative of the crepuscular-evening phase (D. rafinesquii, H. benoiti, H. hygomii and L. pusillus). The SIMPER test identified seven species as the main contributors to variations in dolphinfish caught biomass. Of these, four species (S. pilchardus, T. trachurus, E. encrasicolus and C. labrosus) showed a significant relationship between their transformed read counts and dolphinfish caught biomass. Despite the small number of samples, this study highlighted the potential of low-cost passive eDNA collection to assess the composition of pelagic fish assemblages around FADs. This improves our understanding of the ecological dynamics around these fishing gears and helps to optimise fishing efficiency, thereby promoting sustainable fisheries management strategies.
DOI: 10.15156/bio/sh0167157.10fu
title: SH0167157.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/zmzs2b6xnh
title: Saturation, swelling pressure, permeability and porosity data of a Bavarian bentonite, Friedland clay and Opalinus clay from percolation experiments at 35–150 °C

description: The given research data comprise results of percolation experiments with the Bavarian bentonite Calcigel (B25), Friedland clay (FRT) and Opalinus clay (OPA) at temperatures between 35 °C and 150 °C. Particularly, the final degree of saturation, the swelling pressure evolution, liquid permeability and porosity (mercury intrusion porosimetry, MIP) were measured and are provided in the given data sheets. 

The results, except the MIP data, were obtained at the GRS gGmbH (Braunschweig, Germany) in the frames of the research project "Thermische Integrität von Ton und Tonsteinen - Experiment und gekoppelte THMC-Simulationen" (THMC-Sim) carried out by Dr Artur Meleshyn and Dr Matthias Hinze and funded (grant number 45185358) by the Site Selection Division of the Bundesgesellschaft für Endlagerung mbH (represented by Head of Department Safety Investigations PD Dr Wolfram Rühaak, project support Merle Bjorge). 

The MIP data were obtained by Dr Neven Ukrainczyk and Dipl.-Ing. (FH) Yvette Schales at the Institute of Construction and Building Materials of the Technical University of Darmstadt (Germany) and provided to GRS gGmbH by Dr Lan Nguyen-Thanh within the framework of the sub-contract ‘Analysen_THMC-Sim’ (order number 3573 – 45185358 – AN430020).

These data were used by Artur Meleshyn, Matthias Hinze, Marvin Middelhoff, Larissa Friedenberg, and Kyra Jantschik to prepare the scientific report "Thermische Integrität von Ton und Tonsteinen - Experiment und gekoppelte THMC-Simulationen (THMC-Sim)", which provides a detailed account of the experimental concept and derivation of data. The report can be downloaded from https://www.grs.de/de/aktuelles/publikationen/grs-787.
DOI: 10.15156/bio/sh0167158.10fu
title: SH0167158.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.