cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5729535
title: Characterizing Defective Configuration Code Scripts Used For Continuous Deployment

description: - Download SCRIPT.LABELS.DUMP. This is a pickle file, where a dictionary is stored. The keys of the dictionary is the ID of the files, and the value of the key is a tuple where the first entry is the content of the script, the second entry is the defect label for the script, and the third entry is dataset name (0 for Mozilla, 1 for Openstack, and 2 for Wikimedia). <br>- import the pickle file using<br><br>&gt; import cPickle as pickle <br>&gt; all_script_dict = pickle.load( open('SCRIPT.LABELS.DUMP', 'rb'))<br><br>- iterate over the dictionary
DOI: 10.17637/rh.5729508
title: RG1 collage

description: Whole collage from RG1<br>
DOI: 10.6084/m9.figshare.5729457
title: <i>SlWRKY45</i>, nematode-responsive tomato <i>WRKY</i> gene, enhances susceptibility to the root knot nematode; <i>M. javanica</i> infection

description: The fluctuation of tomato's WRKY defense regulators during infection by the root knot nematode <i>Meloidogyne javanica</i> was analyzed: and the spatial and temporal expression of <i>SlWRKY45</i> was studied in depth with regard to its response to nematode infection, phytohormones, and wounding. Expression of <i>WRKY45</i> increased substantially within 5 d upon infection and continued through feeding-site development and gall maturation. Histological analysis of nematode feeding sites indicated that <i>WRKY45</i> was highly expressed within the feeding cells and associated vascular parenchyma cells. Responses of SlWRKY45 promoters to several phytohormones showed that <i>WRKY45</i> was highly induced by specific phytohormones, including cytokinin, auxin, and the defense-signaling molecule salicylic acid (SA), but not by the jasmonates. Overexpressing tomato lines were generated, and infection tests showed that, significantly, roots over-expressing SlWRKY45 contained substantially increased number of females, indicating that <i>WRKY45</i> overexpression supported faster nematode development. qRT-PCR tests have shown roots overexpressing <i>WRKY45</i> suppressed the jasmonic acid and salicylic acid marker genes, proteinase inhibitor (PI), and pathogenesis related protein (PR1), respectively, and also the cytokinin response factors <i>CRF1</i> and <i>CRF6</i>. Overall, this study indicated SlWRKY45 to be a potential transcription factor whose manipulation by the invading nematode might be critical for coordination of hormone signals supporting favorable condition for nematode development in root tissue<i>.</i>
DOI: 10.6084/m9.figshare.5729457.v1
title: <i>SlWRKY45</i>, nematode-responsive tomato <i>WRKY</i> gene, enhances susceptibility to the root knot nematode; <i>M. javanica</i> infection

description: The fluctuation of tomato's WRKY defense regulators during infection by the root knot nematode <i>Meloidogyne javanica</i> was analyzed: and the spatial and temporal expression of <i>SlWRKY45</i> was studied in depth with regard to its response to nematode infection, phytohormones, and wounding. Expression of <i>WRKY45</i> increased substantially within 5 d upon infection and continued through feeding-site development and gall maturation. Histological analysis of nematode feeding sites indicated that <i>WRKY45</i> was highly expressed within the feeding cells and associated vascular parenchyma cells. Responses of SlWRKY45 promoters to several phytohormones showed that <i>WRKY45</i> was highly induced by specific phytohormones, including cytokinin, auxin, and the defense-signaling molecule salicylic acid (SA), but not by the jasmonates. Overexpressing tomato lines were generated, and infection tests showed that, significantly, roots over-expressing SlWRKY45 contained substantially increased number of females, indicating that <i>WRKY45</i> overexpression supported faster nematode development. qRT-PCR tests have shown roots overexpressing <i>WRKY45</i> suppressed the jasmonic acid and salicylic acid marker genes, proteinase inhibitor (PI), and pathogenesis related protein (PR1), respectively, and also the cytokinin response factors <i>CRF1</i> and <i>CRF6</i>. Overall, this study indicated SlWRKY45 to be a potential transcription factor whose manipulation by the invading nematode might be critical for coordination of hormone signals supporting favorable condition for nematode development in root tissue<i>.</i>
DOI: 10.6084/m9.figshare.5729406
title: A floristic survey of Fair Isle

description: Fair Isle is a small isolated island located off the northern tip of Great Britain. Recognised internationally for rare migratory birds and important seabird colonies, the flora of Fair Isle has received far less attention. To rectify this, we present the first comprehensive floristic study of the island. A botanical survey was performed for each monad, and habitat information was collated following the NCC Phase 1 habitat survey method. These data were compiled to give a comprehensive checklist of 318 species, classified into 31 orders, 68 families and 191 genera according to APG IV. Of the total number of species, 255 are native to Great Britain and the remaining 63 are aliens. The list includes 10 species under threat, seven nationally scarce and one nationally rare species. Our results reveal that even though Fair Isle is about 200 times smaller than the full archipelago of Shetland, it holds over one-third the number of species. The island is also notable for its complex mosaic of habitats, which include a range of communities that are rare or under threat elsewhere in the British Isles. We provide a detailed commentary of island diversity, and recommendations for future monitoring to record changes in land-use and the effects of climate change.
DOI: 10.6084/m9.figshare.5729406.v1
title: A floristic survey of Fair Isle

description: Fair Isle is a small isolated island located off the northern tip of Great Britain. Recognised internationally for rare migratory birds and important seabird colonies, the flora of Fair Isle has received far less attention. To rectify this, we present the first comprehensive floristic study of the island. A botanical survey was performed for each monad, and habitat information was collated following the NCC Phase 1 habitat survey method. These data were compiled to give a comprehensive checklist of 318 species, classified into 31 orders, 68 families and 191 genera according to APG IV. Of the total number of species, 255 are native to Great Britain and the remaining 63 are aliens. The list includes 10 species under threat, seven nationally scarce and one nationally rare species. Our results reveal that even though Fair Isle is about 200 times smaller than the full archipelago of Shetland, it holds over one-third the number of species. The island is also notable for its complex mosaic of habitats, which include a range of communities that are rare or under threat elsewhere in the British Isles. We provide a detailed commentary of island diversity, and recommendations for future monitoring to record changes in land-use and the effects of climate change.
DOI: 10.6084/m9.figshare.5729364
title: Data belonging to “Transient travel time distributions and age-ranked storage-discharge relationships of three lowland catchments”.

description: Data belonging to Kaandorp et al., Transient travel time distributions and age-ranked storage-discharge relationships of three lowland catchments. Submitted to Water Resources Research, December 2017.
DOI: 10.6084/m9.figshare.5729364.v2
title: Data belonging to “Transient travel time distributions and age-ranked storage-discharge relationships of three lowland catchments”.

description: Data belonging to Kaandorp et al., Transient travel time distributions and age-ranked storage-discharge relationships of three lowland catchments. Submitted to Water Resources Research, December 2017.
DOI: 10.6084/m9.figshare.5729364.v1
title: Data_WRR_Kaandorp_etal_2017.xlsx

description: Data belonging to Kaandorp et al., Transient travel time distributions and age-ranked storage-discharge relationships of three lowland catchments. Submitted to Water Resources Research, December 2017.
DOI: 10.6084/m9.figshare.5729337
title: Old version of wimu on gitHub

description: old version
DOI: 10.6084/m9.figshare.5729292
title: Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permissionless Blockchains

description: This fileset contains the dataset of decisions used in the experimental evaluation of Consistency Verifier, as described in the associated <i>Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permisionless Blockchains</i>, ESWC 2018 paper.<br><br>The dataset has been generated by a tool (https://github.com/ThemisB/diavgeiaRedefined/blob/master/benchmarks/importer.js) that randomly creates decisions according to the <i>Diavgeia</i> ontology.
DOI: 10.6084/m9.figshare.5729292.v2
title: Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permissionless Blockchains

description: This fileset contains the dataset of decisions used in the experimental evaluation of Consistency Verifier, as described in the associated <i>Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permisionless Blockchains</i>, ESWC 2018 paper.<br><br>The dataset has been generated by a tool (https://github.com/ThemisB/diavgeiaRedefined/blob/master/benchmarks/importer.js) that randomly creates decisions according to the <i>Diavgeia</i> ontology.
DOI: 10.6084/m9.figshare.5729292.v1
title: Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permisionless Blockchains

description: This fileset contains the dataset of decisions used in the experimental evaluation of Consistency Verifier, as described in the associated <i>Modeling and Preserving Greek Government Decisions using Semantic Web Technologies and Permisionless Blockchains</i>, ESWC 2018 paper.<br><br>The dataset has been generated by a tool (https://github.com/ThemisB/diavgeiaRedefined/blob/master/benchmarks/importer.js) that randomly creates decisions according to the <i>Diavgeia</i> ontology.
DOI: 10.6084/m9.figshare.5729277
title: Feather mites play a role in cleaning host feathers : new insights from DNA metabarcoding and microscopy

description: HiSeq raw data, and processed representative sequences files:<br>- Mothur output files: Taxonomy_file, shared_file, summary, otu_rep_output, otu_rep_fasta_associated<br>- Pipit output files: otu_table_mod_biom, repseqs.fasta<br>- CD-HIT output files: <br>11_Ac_Plant_H2NJJBC11_Ac_Plant_H2NJJBC.clstr<br>47_Ac_Plant_H2NJJBC47_Ac_Plant_H2NJJBC.clstr<br>
DOI: 10.6084/m9.figshare.5729277.v1
title: Feather mites play a role in cleaning host feathers : new insights from DNA metabarcoding and microscopy

description: HiSeq raw data, and processed representative sequences files:<br>- Mothur output files: Taxonomy_file, shared_file, summary, otu_rep_output, otu_rep_fasta_associated<br>- Pipit output files: otu_table_mod_biom, repseqs.fasta<br>- CD-HIT output files: <br>11_Ac_Plant_H2NJJBC11_Ac_Plant_H2NJJBC.clstr<br>47_Ac_Plant_H2NJJBC47_Ac_Plant_H2NJJBC.clstr<br>
DOI: 10.6084/m9.figshare.5729223
title: Supplementary Material for: Maternal and Cord Blood Adiponectin Concentrations in Small for Gestational Age: A Meta-Analysis

description: <b><i>Background:</i></b> Adiponectin, which may have a growth-promoting effect through its insulin-sensitizing action, is thought to play a key role in fetal growth. This study was performed to determine whether maternal and/or cord blood adiponectin concentrations differ between small for gestational age (SGA) and healthy controls. <b><i>Methods:</i></b> Databases were searched to identify good quality English language studies providing the number of SGA and healthy controls, and the means and standard deviations of maternal or cord blood adiponectin concentration in both groups. A meta-analysis was performed to summarize the standardized mean differences (SMDs) in maternal and cord blood adiponectin concentrations between SGA and healthy controls. <b><i>Results:</i></b> There was no statistically significant difference in maternal blood adiponectin concentration between SGA and healthy controls (<i>n</i> = 8, <i>p</i> = 0.951). However, cord blood adiponectin concentration was significantly lower in SGA than in healthy controls (<i>n</i> = 6, <i>p</i> = 0.028), and the effect was large (i.e., SMD &gt;0.7). <b><i>Conclusions:</i></b> Maternal blood adiponectin concentration is not low in SGA compared with healthy controls. However, SGA shows lower cord blood adiponectin concentration than healthy controls.
DOI: 10.6084/m9.figshare.5729223.v1
title: Supplementary Material for: Maternal and Cord Blood Adiponectin Concentrations in Small for Gestational Age: A Meta-Analysis

description: <b><i>Background:</i></b> Adiponectin, which may have a growth-promoting effect through its insulin-sensitizing action, is thought to play a key role in fetal growth. This study was performed to determine whether maternal and/or cord blood adiponectin concentrations differ between small for gestational age (SGA) and healthy controls. <b><i>Methods:</i></b> Databases were searched to identify good quality English language studies providing the number of SGA and healthy controls, and the means and standard deviations of maternal or cord blood adiponectin concentration in both groups. A meta-analysis was performed to summarize the standardized mean differences (SMDs) in maternal and cord blood adiponectin concentrations between SGA and healthy controls. <b><i>Results:</i></b> There was no statistically significant difference in maternal blood adiponectin concentration between SGA and healthy controls (<i>n</i> = 8, <i>p</i> = 0.951). However, cord blood adiponectin concentration was significantly lower in SGA than in healthy controls (<i>n</i> = 6, <i>p</i> = 0.028), and the effect was large (i.e., SMD &gt;0.7). <b><i>Conclusions:</i></b> Maternal blood adiponectin concentration is not low in SGA compared with healthy controls. However, SGA shows lower cord blood adiponectin concentration than healthy controls.
DOI: 10.6084/m9.figshare.5729217
title: Pharmacological interventions for stress ulcer prophylaxis in critically ill patients: a mixed treatment comparison network meta-analysis and a recursive cumulative meta-analysis

description: <b>Background</b>: Proton pump inhibitors (PPI), histamine-2 receptor antagonists (H2RA), sucralfate and antacids are the commonly administered agents for stress ulcer prophylaxis (SUP) in critically ill patients. The authors of this paper have conducted a network meta-analysis to compare the efficacy of these agents in SUP. <b>Methods</b>: Electronic databases were searched for randomized controlled trials, cohort studies and conference abstracts for studies comparing a SUP agent in critically ill patients to another active SUP agent or placebo. Overt, occult and clinically significant upper gastro-intestinal (UGI) bleeding, all-cause mortality, pneumonia, gastric colonization and ICU length of stay were considered as the outcome measures. A random effects model was used to generate pooled estimates. <b>Results</b>: A total of 53 studies (4258 participants) were included. The pooled estimates were in favor of PPI and sucralfate for the overt UGI bleeding. PPI and H2RA bolus were associated with increased risk of gastric colonization and pneumonia. <b>Conclusions</b>: SUP in critically ill patients was not associated with any benefit with regard to clinically significant bleeding episodes. However, PPI and sucralfate significantly reduces overt UGI bleeding. On the contrary, PPI and H2RA bolus are associated with an increased risk of gastric colonization and pneumonia.
DOI: 10.6084/m9.figshare.5729217.v1
title: Pharmacological interventions for stress ulcer prophylaxis in critically ill patients: a mixed treatment comparison network meta-analysis and a recursive cumulative meta-analysis

description: <b>Background</b>: Proton pump inhibitors (PPI), histamine-2 receptor antagonists (H2RA), sucralfate and antacids are the commonly administered agents for stress ulcer prophylaxis (SUP) in critically ill patients. The authors of this paper have conducted a network meta-analysis to compare the efficacy of these agents in SUP. <b>Methods</b>: Electronic databases were searched for randomized controlled trials, cohort studies and conference abstracts for studies comparing a SUP agent in critically ill patients to another active SUP agent or placebo. Overt, occult and clinically significant upper gastro-intestinal (UGI) bleeding, all-cause mortality, pneumonia, gastric colonization and ICU length of stay were considered as the outcome measures. A random effects model was used to generate pooled estimates. <b>Results</b>: A total of 53 studies (4258 participants) were included. The pooled estimates were in favor of PPI and sucralfate for the overt UGI bleeding. PPI and H2RA bolus were associated with increased risk of gastric colonization and pneumonia. <b>Conclusions</b>: SUP in critically ill patients was not associated with any benefit with regard to clinically significant bleeding episodes. However, PPI and sucralfate significantly reduces overt UGI bleeding. On the contrary, PPI and H2RA bolus are associated with an increased risk of gastric colonization and pneumonia.
DOI: 10.6084/m9.figshare.5729214
title: Data_Linderholm et al., 2017

description: This file contains the data used for plotting the Figure 1-2, 12-14, S1-S2 (6 LM simulations) of the Arctic 2K review paper: Linderholm et al. (2017). The method used to generate the data is described in the paper.<br>Linderholm et al., 2017 Climate of the Past
DOI: 10.6084/m9.figshare.5729214.v1
title: Data_Linderholm et al., 2017

description: This file contains the data used for plotting the Figure 1-2, 12-14, S1-S2 (6 LM simulations) of the Arctic 2K review paper: Linderholm et al. (2017). The method used to generate the data is described in the paper.<br>Linderholm et al., 2017 Climate of the Past
DOI: 10.6084/m9.figshare.5729193
title: CpRG_vibrational-levels from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Calculated bound vibrational energy levels of the C+/RG complexes
DOI: 10.6084/m9.figshare.5729193.v1
title: CpRG_vibrational-levels from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Calculated bound vibrational energy levels of the C+/RG complexes
DOI: 10.6084/m9.figshare.5729190
title: CpAr_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Ar
DOI: 10.6084/m9.figshare.5729187
title: CpKr_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Kr
DOI: 10.6084/m9.figshare.5729187.v1
title: CpKr_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Kr
DOI: 10.6084/m9.figshare.5729184
title: CpNe_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Ne
DOI: 10.6084/m9.figshare.5729184.v1
title: CpNe_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Ne
DOI: 10.6084/m9.figshare.5729181
title: CpXe_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Kr
DOI: 10.6084/m9.figshare.5729181.v1
title: CpXe_PECs from Interactions of C<sup>+</sup>(<sup>2</sup>P<sub>J</sub>) with rare gas atoms: incipient chemical interactions, potentials and transport coefficients

description: Potential energy curves for C+/Kr
DOI: 10.6084/m9.figshare.5729124
title: Serval (Leptailurus serval) camera trap and live trap dataset at Secunda, South Africa

description: This fileset contains the data and code used to conduct the analyses presented in:<br>Loock, D.J.E., Williams, S.T., Emslie, K., Matthews, W.S., and Swanepoel, L.H, (2018) Carnivore population density highlights the conservation value of industrialised sites. Scientific Reports 8, 1-9. doi: 10.1038/s41598-018-34936-0. Available at https://www.nature.com/articles/s41598-018-34936-0.<br>A preprint of the paper is available at bioRxiv: https://doi.org/10.1101/260729. <br>This study presents data on the serval population density and demography at Sasol Secunda Operations Plant, South Africa.<br><br>For further information please see this paper, or email Sam Williams (samual.t.williams@gmail.com), Daan Loock (daanje.l@mweb.co.za), or Lourens Swanepoel (lourens.swanepoel.univen@gmail.com).
DOI: 10.6084/m9.figshare.5729064
title: Original dataset

description: The original dataset.
DOI: 10.6084/m9.figshare.5729043
title: Data fusion of body-worn accelerometers and heart rate to predict VO2max during submaximal running

description: <b>subjects.csv</b>Characteristics of the subjects.<br><br><b>features.csv</b>All 490 features to select from.<b><br></b><b>weyand.csv</b>Features to compare with Weyand et al.'s model.
DOI: 10.6084/m9.figshare.5729043.v1
title: Data fusion of body-worn accelerometers and heart rate to predict VO2max during submaximal running

description: <b>subjects.csv</b>Characteristics of the subjects.<br><br><b>features.csv</b>All 490 features to select from.<b><br></b><b>weyand.csv</b>Features to compare with Weyand et al.'s model.
DOI: 10.6084/m9.figshare.5729031
title: NutritionIntake_4areas-0927-revised1009-cut20171222.xlsx

description: Dietary intake dataset collected in West Java, Indonesia.
DOI: 10.6084/m9.figshare.5729031.v1
title: NutritionIntake_4areas-0927-revised1009-cut20171222.xlsx

description: Dietary intake dataset collected in West Java, Indonesia.
DOI: 10.6084/m9.figshare.5728998
title: ASB agricultural LUC map

description: We provide a remote-sensing based map of abandoned and recultivated croplands in the Aral Sea Basin to support land resource management and decision making. We produced, validated and made publically available such map by using 250-m time series from the MODIS Terra and Aqua satellites for the period 2003–2016.<br>
DOI: 10.6084/m9.figshare.5728998.v2
title: ASB agricultural LUC map

description: We provide a remote-sensing based map of abandoned and recultivated croplands in the Aral Sea Basin to support land resource management and decision making. We produced, validated and made publically available such map by using 250-m time series from the MODIS Terra and Aqua satellites for the period 2003–2016.<br>
DOI: 10.6084/m9.figshare.5728998.v1
title: ASB agricultural LUC map

description: We provide a remote-sensing based map of abandoned and recultivated croplands in the Aral Sea Basin to support land resource management and decision making. We produced, validated and made publically available such map by using 250-m time series from the MODIS Terra and Aqua satellites for the period 2003–2016.<br>
DOI: 10.6084/m9.figshare.5728968
title: Additional file 2: Table S2. of Comparison, alignment, and synchronization of cell line information between CLO and EFO

description: Final EFO-CLO alignment result. The 874 EFO-CLO mapped cell lines aligned and merged into CLO (Tab. 1 in the excel file) and 344 EFO unique immortalized permanent cell lines added to CLO (Tab. 2 in the excel file). File is stored in Microsoft Excel spreadsheet (xlsx) format. (XLSX 54Â kb)