cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10896290
title: The structure of simple satellite variation in the human genome and its correlation with centromere ancestry (Supplemental Data)

description: Accompanying Github

Supplemental File 1. BLAST results of k-mer concatemers against T2T-CHM13-v2.0.

Supplemental File 2. Annotations of centromeres, and telomeres of T2T-CHM13-v2.20. Table of abundance of k-mers in annotated regions as numpy file from BLAST hits. Abundance of k-mers across genome in 100kb bins from BLAST hits as .npz files accessible by example:

    import numpy as np    dense = np.load("filename.npz")    dense["chr1"]  Supplemental File 3. Table of pairwise R2 between simple satellites and table of pairwise interspersion OR between simple satellites. Folder containing QQ plots of negative binomial fit of satellite copy number distribution used to qualitatively asses model fit.

Supplemental File 4. Materials and results of cenGRM analysis. Boundaries used for centromeric regions of each cenGRM, cenGRMs in GCTA format, and tables with the results of cenGRM GCTA runs. Also provide pdfs of the dendrograms/heatmaps produced from UPGMA clustering of each cenGRM. 

Supplemental File 5 Non-human significant BLAST hits from BLAST-ing k-mer concatamers to non-human sequences.

Supplemental Table 1. Copy number normalized to 1x depth given GC bias of 126 most abundant satellites analyzed in paper in each individual. Additional columns represent metadata of the individual:



instrument: sequencer instrument name used to sequence library.

run: sequencer run of the library.

flow: flowcell ID of the ibrary.

pop: 1,000 Genomes Project population ID.

superpop: 1,000 Genomes Project superpopulation ID.

reads: average autosomal read depth of the library.


Supplemental Table 2. Copy number normalized to 1x depth given GC bias of the top 126 most abundant satellites analyzed in paper in each individual of the 1KGP, plus estimates of the same satellites in CHM13 short-read libraries subsampled from 18x-0.5x, 18x depth simulated library of the T2T-CHM13v2.0 assembly analyzed using k-Seek, and Tandem Repeat Finder results of the T2T-CHM13v2.0 asembly Hoyt 2022.

Supplemental Table 3. Copy number normalized to 1x depth given GC bias of all tandem repeats with k-mer <= 20 (6,309) found collectively in the CHM13 short-read libraries subsampled from 18x-0.5x, 18x depth simulated library of the T2T-CHM13v2.0 assembly analyzed using k-Seek, and Tandem Repeat Finder results of the T2T-CHM13v2.0 asembly Hoyt 2022.
DOI: 10.15468/dl.vngngv
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nastus madagascariensis A.Camus"
 ]
}

 The dataset includes 30 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063085-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4cq7b
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oberonia grandis Ridl."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063086-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e3m7h
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ornithogalum graecum Zahar."
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063087-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xygcu9
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma troodi Kotschy"
 ]
}

 The dataset includes 27 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063088-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy4pzm
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nephrodesmus parvifolius Schindl."
 ]
}

 The dataset includes 80 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063089-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d7n8g
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tantilla wilcoxi Stejneger, 1902",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 101 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063090-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2jqca
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Clerodendrum pynaertii De Wildeman 1909"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063092-240321170329656/datasets/export for details.
DOI: 10.15468/dl.j3c45f
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncostemum nitidulum (Baker) Mez"
 ]
}

 The dataset includes 72 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063091-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5dzrq
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oberonia griffithiana Lindl."
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063093-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw9g3k
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nastus manongarivensis A.Camus"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063094-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kggsmv
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Estonia, Switzerland, Austria, Italy, Ukraine, Bulgaria, Greece)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gymnostomum aeruginosum Sm."
 ]
}

 The dataset includes 1180 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063095-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gjfmx
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ornithogalum graminifolium Thunb."
 ]
}

 The dataset includes 594 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063096-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5a43sc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma velutina Boiss."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063097-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmavdm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tantilla wilcoxi rubricata Smith",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063099-240321170329656/datasets/export for details.
DOI: 10.15468/dl.6tuuvc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Millettia laurentii"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063100-240321170329656/datasets/export for details.
DOI: 10.15468/dl.2evkt9
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nephrodesmus sericeus (Hochr.) Schindl."
 ]
}

 The dataset includes 92 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063098-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42shkk
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncostemum oliganthum (Baker) Mez"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063101-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggt24u
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scolomys melanops Anthony, 1924"
 ]
}

 The dataset includes 49 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063102-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezgd35
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nastus perrieri A.Camus"
 ]
}

 The dataset includes 30 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063103-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjhmk2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oberonia helferi Hook.f."
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063104-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkseb2
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma viridis (Borbás) Jáv."
 ]
}

 The dataset includes 103 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063105-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejxgjc
title: Occurrence Download

description: A dataset containing 1051 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ornithogalum gussonei Ten."
 ]
}

 The dataset includes 1051 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063106-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwe4ms
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Millettia laurentii"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063107-240321170329656/datasets/export for details.
DOI: 10.15468/dl.726mzj
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tantilla yaquia Smith, 1942",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 113 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063108-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbwrmm
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nephrolepis abrupta (Bory) Mett."
 ]
}

 The dataset includes 413 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063109-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kspz2
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhodiola crenulata (Hook.fil. & Thomson) H.Ohba"
 ]
}

 The dataset includes 196 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021444-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubhrhm
title: Occurrence Download

description: A dataset containing 3125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salpa thompsoni Foxton, 1961"
 ]
}

 The dataset includes 3125 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021445-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24241069
title: Stigma and Fear of COVID-19 Among Medical Students in Pakistan: A Dataset

description: Introduction: The COVID-19 pandemic has profoundly impacted society, including the medical community. Medical students treating COVID-19 or working in healthcare settings may face stigma and discrimination due to fears surrounding the virus. This study is aimed to determine the stigma and fear of COVID-19 among the medical students of Pakistan. Methods: A web-based cross-sectional study was conducted among medical students in Pakistan from September 15, 2021, to October 15, 2021. An online self–reported questionnaire was developed and used for data collection comprising of sociodemographic factors, reluctance towards COVID-19, and stigma and fear towards the COVID-19 patients was assessed using the 5-point Likert scale. Data were analyzed using the Statistical Package for Social Sciences (SPSS). Results: A total of 716 responses were received, with a 74% response rate. 50.4 % avoided COVID-19 patients, and 69.8% used special measures with COVID-19 patients. While measuring response to stigma, 45.4% of candidates advised patients recovering from COVID-19 should avoid public gatherings, and 46.6% get infected with COVID-19 as they are involved in irresponsible activities. 336 (46.9%) participants were afraid of COVID-19, 220 (30.7%) were fearful of losing their lives to COVID-19, and 281 (39.3%) had anxiety about COVID-19-related news. Stigma was higher among males (p&lt;0.001) and medical students of colleges not affiliated with hospitals with COVID-19 patients (p=0.039). Females (p=0.016) and medical students worried about getting infected with COVID-19 (p=0.002) had higher levels of fear. Conclusion: Most students had a positive attitude and used protective measures against COVID-19. However, a significant proportion had stigma and fear towards COVID-19 patients. Males and medical students without COVID-19 affiliated units had higher stigma levels, while females and medical students worried about COVID-19 infection had higher levels of fear. Awareness campaigns and mental health support are needed to overcome the anxiety, fear, and stigma among medical students.
DOI: 10.6084/m9.figshare.24241069.v1
title: Stigma and Fear of COVID-19 Among Medical Students in Pakistan: A Dataset

description: Introduction: The COVID-19 pandemic has profoundly impacted society, including the medical community. Medical students treating COVID-19 or working in healthcare settings may face stigma and discrimination due to fears surrounding the virus. This study is aimed to determine the stigma and fear of COVID-19 among the medical students of Pakistan. Methods: A web-based cross-sectional study was conducted among medical students in Pakistan from September 15, 2021, to October 15, 2021. An online self–reported questionnaire was developed and used for data collection comprising of sociodemographic factors, reluctance towards COVID-19, and stigma and fear towards the COVID-19 patients was assessed using the 5-point Likert scale. Data were analyzed using the Statistical Package for Social Sciences (SPSS). Results: A total of 716 responses were received, with a 74% response rate. 50.4 % avoided COVID-19 patients, and 69.8% used special measures with COVID-19 patients. While measuring response to stigma, 45.4% of candidates advised patients recovering from COVID-19 should avoid public gatherings, and 46.6% get infected with COVID-19 as they are involved in irresponsible activities. 336 (46.9%) participants were afraid of COVID-19, 220 (30.7%) were fearful of losing their lives to COVID-19, and 281 (39.3%) had anxiety about COVID-19-related news. Stigma was higher among males (p&lt;0.001) and medical students of colleges not affiliated with hospitals with COVID-19 patients (p=0.039). Females (p=0.016) and medical students worried about getting infected with COVID-19 (p=0.002) had higher levels of fear. Conclusion: Most students had a positive attitude and used protective measures against COVID-19. However, a significant proportion had stigma and fear towards COVID-19 patients. Males and medical students without COVID-19 affiliated units had higher stigma levels, while females and medical students worried about COVID-19 infection had higher levels of fear. Awareness campaigns and mental health support are needed to overcome the anxiety, fear, and stigma among medical students.
DOI: 10.14457/tu.the.2022.1027
title: การวิเคราะห์การวางผังโครงการของหมู่บ้านจัดสรรประเภทบ้านเดี่ยวในกรุงเทพมหานครระดับราคาสูงกว่า 20 ล้านบ้าน

description: การศึกษาครั้งนี้ได้ทำการศึกษาปัจจัยต่างๆ ทั้งด้านกายภาพ ด้านเศรษฐกิจ และด้านสังคม ในการวางผังโครงการหมู่บ้านจัดสรรประเภทบ้านเดี่ยว โดยได้ทำการแบ่งระดับราคาที่ทำการศึกษาออกเป็น 2 ระดับราคา คือ ราคาตั้งแต่ 20 - 50 ล้านบาท จำนวน 8 โครงการ และราคามากกว่า 50 ล้านบาท จำนวน 8 โครงการ ซึ่งรวบรวมจากเครือข่ายอินเตอร์เน็ตเพื่อศึกษาเปรียบเทียบปัจจัยด้านต่างๆ ของแต่ละโครงการ จากการศึกษาพบว่า พื้นที่โครงการทุกโครงการมีขนาดของถนนภายในพื้นที่โครงการอยู่ในระดับที่กฎหมายกำหนด โดยแต่ละโครงการมีการกำหนดขนาดแปลงที่ดิน ราคาขาย รวมถึงรูปแบบของบ้านที่มีมากกว่า 1 แบบให้เลือก และยังมีความหนาแน่นของจำนวนบ้านที่ไม่มากนัก โดยอยู่ในช่วง 0.9 - 6 หลังต่อไร่ ส่วนจุดอ่อนของแผนผังโครงการหมู่บ้านจัดสรรจากการศึกษาพบว่าในแผนผังยังไม่ได้มีการแบ่งโซนของที่อยู่อาศัยที่ชัดเจน และพบว่าโครงการราคามากกว่า 50 ล้านมีความหนาแน่นน้อยกว่าโครงการ 20 - 50 ล้าน แต่มีพื้นที่ใช้สอยมากกว่า และค่อนข้างมีสาธารณูปโภคที่ดีกว่า จากการผลการศึกษาครั้งนี้ ได้เสนอแนะแนวทางในการวางผังโครงการบ้านจัดสรรประเภทบ้านเดี่ยวได้ดังนี้ (1) การกำหนดพื้นที่ส่วนกลางควรให้ผู้อยู่อาศัยสามารถเข้าถึงบริการได้อย่างสะดวกและทั่วถึง (2) ควรมีการกำหนดตำแหน่งจุดกำจัดขยะ/ระบบบำบัดน้ำเสียในแผนผังขาย เพื่อให้ลูกค้าได้ทราบในช่วงตัดสินใจซื้อ
DOI: 10.14457/tu.the.2022.1028
title: การศึกษาปัจจัยทางกายภาพที่มีผลต่อมูลค่าที่ดิน: กรณีศึกษา: เขตคลองเตย กรุงเทพมหานคร

description: การค้นคว้าอิสระนี้มีวัตถุประสงค์เพื่อศึกษารูปแบบกระจายตัวของราคาที่ดินในเขตคลองเตย รวมถึงปัจจัยทางกายภาพที่มีผลต่อมูลค่าที่ดินในเขตคลองเตย ทำการเก็บรวบรวมข้อมูลจากกลุ่มตัวอย่างที่ดินในพื้นที่เขตคลองเตย กรุงเทพมหานคร จำนวน 100 แปลง จากนั้นทำการสร้างแบบจำลองโดยใช้การวิเคราะห์ความถดถอยเชิงพหุ ผลการศึกษาพบว่า กลุ่มที่ดินระดับราคา 1,000,000 บาทขึ้นไป กระจายตัวตามแนวรถไฟฟ้าสายสีเขียวในระยะรัศมีไม่เกิน 500 เมตร และตามถนนสายย่อยบางจุด ส่วนกลุ่มที่ดินระดับราคา 700,000 – 900,000 บาท เกาะกลุ่มอยู่บริเวณถนนพระรามที่ 4 ใกล้สถานีพระโขนง กลุ่มที่ดินระดับราคา 400,000 – 600,000 บาท กระจายตัวในพื้นที่ตามซอยย่อย และกลุ่มที่ดินระดับราคา 100,000 – 300,000 บาท กระจายตัวตามแนวใต้ทางด่วนพิเศษเฉลิมมหานครและทางพิเศษฉลองรัช ทั้งนี้ พบว่า ตัวแปรพยากรณ์ราคาขายตารางวาของที่ดินในพื้นที่เขตคลองเตย กรุงเทพมหานคร อย่างมีนัยสำคัญทางสถิติที่ระดับ 0.05 ประกอบด้วย ระยะห่างจากถนนสายหลัก โดยสามารถอธิบายอิทธิพลที่มีต่อราคาขายตารางวาของที่ดินในพื้นที่เขตคลองเตย กรุงเทพมหานคร ได้ร้อยละ 9.10