cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27612939.v2
title: WB and numerical raw data for Porcine cGAS-STING signaling induced apoptosis negatively regulates STING downstream IFN response and autophagy via different mechanisms

description: The innate immune cGAS-STING signaling pathway recognizes double-stranded DNA and induces the interferon (IFN) response, autophagy and apoptosis, exerting a broad antiviral effect. However, the mechanisms and interrelationship between STING induced downstream IFN, autophagy, and apoptosis in livestock have not been fully elucidated. Our previous study defined porcine STING (pSTING) induced IFN, autophagy and apoptosis, and showed that IFN does not affect autophagy and apoptosis, whereas autophagy inhibits both IFN and apoptosis, likely by promoting pSTING degradation. In this study, we further explored the underlying mechanism of pSTING induced apoptosis and the regulation of IFN and autophagy by apoptosis. First, pSTING induces endoplasmic reticulum (ER) stress and mitochondrial damage to activate caspases 9, 3, and 7, which drive intrinsic apoptosis. Second, pSTING triggered apoptosis inhibits the IFN response by activating caspase 7, which cleaves pIRF3 at the species specific D197/D198 site. Third, pSTING activated apoptotic caspases 9, 3, and 7 reduce the expression of ATG proteins, and cleave the ATG5-ATG12L1 complex, effectively inhibiting autophagy. Fourth, knockout of pSTING activated apoptosis heightens the IFN response and autophagy, while suppressing the replication of HSV1, VSV and PRV. This study sheds light on the molecular mechanisms of innate immunity in pigs.
DOI: 10.3535/zkd-ysj-qhh
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.923492.v1
title: Preliminary Study Of Butterfly Diversty At Jasdan, Rajkot, India

description: The butterflies play an important role as the pollinator, carries pollen from one<br>flower to another. Their larvaeact as the pest, injurious to various crops.<br>Present study was carried out at Hingolgadh area,Jasdan, Gujaratduring<br>October 2013 to December 2013to record the speciescomposition of<br>butterflies. During this study a total of 15 species and 04families were<br>reported.The reported families Nymphalidae covered 42.85 %,<br>Papilionidae21.43 %, Danaidae 14.29 % and Pieridae21.43 % biodiversity of<br>butterflies of the study area. In Nymphalidae included, JunoniaOrithya,<br>Junoniaalmanac, Bybliailithyia, Hypolimnasbolina, Hypolimnasmisippusand<br>Cynthia cardui. InPapilionidae included Pachlioptaaristolochiae,<br>Papiliodemoliusand Papiliopolytes. In Pierinaeincluded Danauschrysip pusand<br>Danausgenutia. In Pieridae includedCeporanerissa, Catopsiliacrocale<br>andColotisetrida. Species diversity index (H') was highest (1.12) in case of<br>family Nymphalidae compared to other.It is suggest that butterfly species<br>diversitygenerally increase with increase in vegetation and declines with the<br>increase in disturbance.A detail study is required for further exploration of<br>butterfly fauna of Jasdan, Rajkot, Saurashtra.
DOI: 10.17632/4kpb6tc2pb
title: THE INFLUENCE OF CHILLED WATER TEMPERATURE AND COOLING SURFACESON THERMAL COMFORT OF RADIANT COOLING SYSTEM

description: The influence of supply water temperature on the indoor thermal comfort of a radiant cooling system, i.e., a room with thermally activated glass fibre reinforced gypsum (TAGFRG roof) is studied. The supply water temperature is varied from 18 to 26°C with an interval of 2°C. The No Cooling (NC) case, i.e., the cooling system is shut down, is also investigated. A water chiller with a thermostat switch supplies water at the required temperature.  
The surface (area) employed for cooling has a considerable impact on the performance of the radiant cooling system. The cooling area is increased by employing more surfaces(walls and floor) for cooling. The piping to each surface has an individual valve to control the flow rate of the chilled water. Four cases of cooling surface combinations are studied, namely, Roof only (R), Roof and Floor (RF), Roof, Floor and 2 Walls (RF_2W), and All Surfaces (AS). In the RF_2W case, chilled water is supplied to the north and south walls. NC case is also investigated. For R, RF, RF_2W and AS cases, the cooling surface areas are 9, 18, 31.2 and 47.4 m2, respectively. It is a well-established fact that an increase in cooling surface area would increase the heat transfer. In this study, the supply water temperature and the heat load are maintained at 20°C and 400 W (44.4 W/m2).
DOI: 10.17632/s7bnf5ty5s
title: Real-world analysis of the rationality of the clinical use of sintilimab in 96 patients

description: Background: Sintilimab, remains underutilized in China. This study aims to assess the rationality of the clinical usage of sintilimab in such settings. Methods: A real-world study was conducted on patients who received sintilimab at the Pharmacy Department of Anhui Chest Hospital between November 2020 and October 2021. The study evaluated the rationality of sintilimab use based on four aspects: indications, combined medication, usage and dosage, and duration of medication. Results: Ninety-six patients with 316 cycles were included, comprising 81 males (84.4%) and 15 females (15.6%). Lung cancer was the most common cancer type (n=85, 88.5%). Among these patients, sintilimab was used off-label in 10 cases (10.4%). Out of 316 cycles, 38 cycles were administered at an incorrect dilution (in 250 ml of 0.9% NaCl ), and 112 cycles were given at an incorrect dose (at 100 mg). Treatment-related adverse reactions occurred in 37 patients (38.5%), with six experiencing adverse reactions from sintilimab alone, 29 experiencing adverse reactions when combined with chemotherapy, and two experiencing adverse reactions when combined with antiangiogenic drugs. Conclusion: The real-world use of sintilimab involves off-label use and inappropriate dilution or dosing. Hospitals should strengthen management and promote rational drug use.
DOI: 10.3535/g70-y7v-yk2
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wdm-a40-ybx
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14330324.v1
title: FCS files for the flow cytometry data in Figure 3

description: Underlying data for the manuscript 'Activation of regulatory T cells triggers specific changes in glycosylation associated with Siglec-1-dependent inflammatory responses'.
DOI: 10.15468/dl.burfyb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Adansonia digitata L."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009823-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8rm-tya-cen
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kc5-ym7-pxs
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/37c-y3e-k65
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6ff-18f-htq
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/uuid:32cad43f-8bb9-46af-8333-48aae2bea037
title: Data-driven Process Discovery - Artificial Event Log

description: A synthetic event log with 100,000 traces and 900,000 events that was generated by simulating a simple artificial process model. There are three data attributes in the event log: Priority, Nurse, and Type. Some paths in the model are recorded infrequently based on the value of these attributes. Noise is added by randomly adding one additional event to an increasing number of traces. CPN Tools (http://cpntools.org) was used to generate the event log and inject the noise.
DOI: 10.6084/m9.figshare.16992019.v2
title: Alberto Orta etal. Rats exhibit age-related mosaic loss of chromosome Y

description: Coverage data from 60 re-sequenced rat genomes from the following work: Rats exhibit age-related mosaic loss of chromosome Y. Work by Alberto Orta, Diego Cortez and colleagues. The dataset contains two types of data for each of the 60 genomes: one with the normalized coverage (median values of 10,000 nucleotides long; normalized by sequencing depth) and a file containing the log2 ratios of old/young coverage data (median values of 10,000 nucleotides long). To avoid an error that comes from calculating log2 ratios of negative values, we recommend to add the value of 4 (minimum value in the dataset) to the normalized coverage data before performing the log2 ratios of old versus young normalized coverage values.
DOI: 10.6084/m9.figshare.27020095.v1
title: ARVR Adoption in Indonesian VHS Students

description: The data is related with paper titled "<b>Understanding AR/VR Adoption through Heutagogy and Cybergogy: Insights from the UTAUT2 Model in Vocational Education</b>"
DOI: 10.6084/m9.figshare.28519346.v1
title: gai 327.csv

description: The sample size for the structural model was determined based on the guidelines provided by (Krejcie & Morgan, 1970). According to their method, a minimum of 384 samples was required to achieve the desired effect size. A total of 1,500 questionnaires were distributed to administrators in SMEs within the construction industry in China. Ultimately, 408 responses were received, of which 327 were deemed valid after the initial data screening process.
DOI: 10.3535/rvj-rsq-ptn
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sfw-yla-4db
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27230132.v1
title: Additional file 4 of Investigating the effects of mobile bottom fishing on benthic carbon processing and storage: a systematic review protocol

description: Supplementary Material 4
DOI: 10.3535/b9b-2mf-2jm
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hk4-ql6-8rx
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/zgh8yzc6tg
title: Proteome profiling of HepG2 cell line

description: We processed 1 mln cells, diluted in 150 μL of 50 mM HEPES buffer. After three freeze-thaw cycles and centrifugation (4 °C, 15,000 rpm, 15 min), 135 μL of supernatant was collected and treated with 15 μL of the cocktail comprised from 1 mg of RapiGest™ SF Surfactant, 60 μL 0.5 M CAA, 20 μL 0.5 M tris(2-carboxyethyl)phosphine hydrochloride (TCEP), buffered by 20 μL 1 M HEPES. The reaction lasted for 30 min at 70 °C with vigorous shaking at 1500 rpm in darkness.

Enzymatic digestion was performed with trypsin, added to reduced and alkylated proteins to achieve the estimated ratio to the substrate as 1:40 (w/w). The trypsinolysis was incubated for 4 h at 37 °C. The digestion was quenched by trifluoroacetic acid (to pH &lt; 3 finally), incubated for 30 min at 37 °C, and centrifuged at 13,000 g for 10 min. The supernatant (200 uL) with peptides was collected and transferred into the EvoTip to proceed HPLC-MS/MS analysis.

EvoSep One chromatography system connected to Orbitrap Fusion Tribrid mass spectrometer was used to separate and identify the peptides. 

Mass spectra were recorded in the positive ion mode. Data were obtained using the Orbitrap Exactive analyzer with a resolution of 70,000 (at m/z 400) for MS and 15,000 (m/z 400) for MS/MS scans. Higher energy collisional dissociation (HCD) was used to fragment the peptides. The signal threshold was established at 17,500 for an isolation window of 1 m/z. The first mass of HCD spectra was set to 100 m/z. The collision energy was set to 35%. Fragmented predecessors were dynamically excluded from targeting for 10 s. In addition, singly charged ions and ions with no defined charge conditions were excluded from triggering MS/MS scans. Three HPLC-MS/MS repetitions were accomplished for each sample.

Raw proteome data were transformed into mgf files by MSConvert (v. 3). To process proteome data we used SearchGUI software (v. 4.1.24) against SwissProt library of human canonical and alternatively spliced protein sequences. The false discovery rate (FDR) cut-off for peptide-spectra matches, peptides, and proteins was ≤1%. We used the following search parameters: enzyme specificity – trypsin; maximum one missed cleavage; carbamidomethylation of cysteine regarded as fixed modification; oxidation of methionine as variable modifications; precursor mass tolerance of 10 ppm; product mass tolerance of 0.05 Da.
DOI: 10.3535/1j7-yc4-gn3
title: Granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b76-8w7-rp3
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qgw-jv9-ctf
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11417040.v1
title: Database of confusion matrices (SQLite)

description: <b>Summary: </b>Database of confusion matrices retrieved from scientific literature. Suitable for research on the creation and explotation of the confusion matrix that remain as interestint topics, such as new tools, sampling design, indices derived from the matrix, proposals in testing statistical hypotheses and so on.<b><br></b><b>Format:</b> SQLite
DOI: 10.3535/2kz-tz9-p8q
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xyx-nas-0ys
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3db-9wd-tg8
title: †Dianulites petropolitanus Dybowski, 1877 ()

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xs4-9yb-h7z
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28517228.v1
title: <b>Unveil the significance of component-resolved submarine groundwater in modulating greenhouse gases fluxes and carbon sequestration in a tropical mangrove bay</b>

description: Hydrological parameters, radium isotopes and greenhouse gases data in tropical mangrove bay
DOI: 10.3535/gs1-84b-87b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lx0-25k-d7h
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22732103.v1
title: "Where You Sit Matters: The Power of Brokers in Diplomatic Networks and Interstate Conflict."

description: The data has been submitted for replication of "Where You Sit Matters: The Power of Brokers in Diplomatic Networks and Interstate Conflict."
DOI: 10.3535/mdw-ee9-7z7
title: metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.15111287
title: Parametric Datasets for Parametric Dynamic Mode Decomposition - ERMETE Lab

description: Supporting dataset for the Github Repository https://github.com/ERMETE-Lab/pDMD supplementary material for the work https://arxiv.org/abs/2503.24205.

Including 3 parametric datasets:



Flow Over Cylinder with dolfinx-v06

Flow Over Cylinder from CFDbench

Thermal-Hydraulic simulation of the DYNASTY experimental facility with RELAP5
DOI: 10.5281/zenodo.15111288
title: Parametric Datasets for Parametric Dynamic Mode Decomposition - ERMETE Lab

description: Supporting dataset for the Github Repository https://github.com/ERMETE-Lab/pDMD supplementary material for the work https://arxiv.org/abs/2503.24205.

Including 3 parametric datasets:



Flow Over Cylinder with dolfinx-v06

Flow Over Cylinder from CFDbench

Thermal-Hydraulic simulation of the DYNASTY experimental facility with RELAP5
DOI: 10.6084/m9.figshare.11982471.v1
title: How do social status and tree architecture influence radial growth, wood density and drought response in spontaneously established oak forests?

description: The dataset comprises raw data used in the paper: Alfaro-Sánchez et al. 2020. How do social status and tree architecture influence radial growth, wood density and drought response in spontaneously established oak forests?It includes the coordinates and tree density of the stands and the number of stems, diameter, total height, wood density, raw growth and basal area increments of the sample trees.<br>
DOI: 10.6084/m9.figshare.14207216.v2
title: Data Tennis Study

description: Data columns
1-3 contain participant number, age, and group (0 = right handed, 1 = left handed).
Then, scores for the WAIS are reported under no pressure and prior to
performing the handgrip (WAIS_1-12_PRE), followed by the somatic (SomAnx_PRE)
and cognitive anxiety (CogAnx_PRE) scores in the WAIS under no pressure and
prior to performing the handgrip. Thereupon, accuracy scores for the serves
under no pressure prior to performing the handgrip (S1-8_Distance_Target_PRE)
and the mean distance of valid serves under no pressure and prior to performing
the handgrip (Mean_Distance_ValidServes_PRE) are listed. The lower the score,
the smaller the distance to the target. Serving errors are marked as missing
values with -1 or -2. 

Afterwards scores
for the WAIS are reported under pressure after performing the handgrip
(WAIS_1-12_POST), followed by the somatic (SomAnx_POST) and cognitive anxiety
(CogAnx_POST) scores in the WAIS under pressure after performing the handgrip.
Thereupon, accuracy scores for the serves under pressure after performing the
handgrip (S1-8_Distance_Target_POST) and the mean distance of valid serves
under pressure after performing the handgrip (Mean_Distance_ValidServes_POST)
are listed. The lower the score, the smaller the distance to the target.
Serving errors are marked as missing values with -1 or -2.
DOI: 10.3535/q6e-vtc-db6
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ywp-hd6-czr
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fw0-1ct-gdg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s7d-rj3-pbp
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2x9-849-5eb
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lrk-14y-7j1
title: †Dianulites Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rk5-79k-844
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3556611.v1
title: Data Paper. Data Paper

description: File List TempTrait_001.txt (MD5: 6b02c81d8d48ab10e7a57b9b5370df46) Description Environmental temperature has strong and systematic effects on biological processes at all levels of organization, ranging from cells to ecosystems. The large temporal and spatial variation in earth’s temperature creates a complex thermal landscape within which life evolves and operates. Here, we present a data set on how diverse biological rates and times respond to temperature, which we hope will aid in the search for general mechanisms of thermal dependence. For nearly a century, intraspecific studies (within single species’ populations) of thermal responses have been conducted on a wide range of organismal traits. Comparative studies of these data are essential for elucidating mechanisms underlying thermal response curves. However, such comparative intraspecific studies have been limited because of a lack of a comprehensive database that organizes these data with consistent units and trait definitions. Here, we present a database of 2352 thermal responses for 220 traits for microbes, plants, and animals compiled from 270 published sources. This represents the most diverse and comprehensive thermal response data set ever compiled. The traits in this database span levels of biological organization from internal physiology to species interactions, and were measured in marine, freshwater, and terrestrial habitats for 411 species. Although we include some physiological rates, most data are for ecological traits, which we define here to mean any organismal trait that directly determines interactions between individuals within or between species. We hope that publication of our data set will encourage others to compile complementary data sets, especially on individual physiology and life history traits. Intraspecific and interspecific (across species’ populations) analyses of our data set should provide new insights into generalities and deviations in the thermal dependence of biological traits, and thus how biological systems, from cells to ecosystems, respond to temperature change. Such insights are essential for understanding how natural biological systems function, and for how life is responding to Earth’s complex and rapidly changing thermal landscape. <i>Key words: database; ecoinformatics; ecology; environmental driver; evolution; interspecific; intraspecific; species; thermal response; temperature; trait.</i>
DOI: 10.3535/3qd-08p-sk1
title: †Eotomaria Ulrich & Scoffield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8qe-wjq-jkx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21906255.v1
title: S2_dataset.tab.gz

description: Raw data for seasonal gene expression variation. For each human gene, results of the differential gene expression analysis for each season against the rest. <br>
DOI: 10.6084/m9.figshare.28588718.v1
title: Raw data_flow cytometry

description: The data obtained in the work evaluate the accuracy and precision (repeatability) of the FCM method in combination with two fluorescent dyes for monitoring populations of viable yeast cells during inoculated and spontaneous AF of white Chardonnay must and red Zametovka mash under laboratory conditions. There are also data on the accuracy and precision of the FCM method compared to the reference method of plate counting on single cultures of <i>Saccharomyces </i>and non-<i>Saccharomyces</i> yeast strains in sterile liquid YM growth medium.
DOI: 10.6084/m9.figshare.c.3931579_d18.v1
title: Additional file 26: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: NZO_HlLtJ_EPIC. (XLS 1812 kb)
DOI: 10.17632/w2rfvyx74r
title: Mendeley Supplemental Table 1

description: Mendeley Supplemental Table 1
DOI: 10.3535/jtb-9rw-5b9
title: †Gryphaeostrea Conrad, 1865

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vgb-4qs-2k8
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.