cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28774712.v1
title: U-Net Pretrained Model

description: The model was trained on over 3,000 image-mask pairs using Sentinel-2 imagery and CAL FIRE’s Wildland Fire Threat layer, specifically from the 2017 Lilac Fire in San Diego County, California. The training data was curated from the Pala Mesa region, an area significantly impacted by wildfire activity and containing critical road and rail networks.The model outputs multi-class segmentation masks that classify areas into low-moderate, high, very high, and extreme wildfire threat categories which may support emergency preparedness and response and infrastructure risk analysis. This pretrained version allows users to test the model and generate inferences without requiring a long runtime for training, making it ideal for rapid evaluation, demonstration, or integration into spatial AI workflows.NoteThis model was trained on a region-specific dataset (Lilac Fire, 2017), and generalization to other fires or regions may require fine-tuning.Masks are aligned with CAL FIRE’s threat classification and were processed using 1,000-foot buffers around infrastructure features.Data provided by:California Department of Forestry and Fire Protection (CAL FIRE)European Space Agency (Sentinel-2 via Copernicus Program)U.S. Census Bureau (TIGER/Line Roads)Federal Railroad Administration / Bureau of Transportation Statistics
DOI: 10.6084/m9.figshare.20553711.v1
title: Supplementary Material for: Validity and Reliability of Two Digital Wound Measurement Tools after Surgery in Patients with Hidradenitis Suppurativa

description: <b><i>Background:</i></b> After excision surgery in patients with hidradenitis suppurativa (HS), wounds are usually left open for secondary intention healing. To evaluate wound healing, reliable wound measurement is important. However, digital wound measurement tools for measuring the surface area are validated for small wounds located on flat or mildly convex body surfaces in studies, often powered inadequately. Up until now, a validated digital measurement tool to accurately measure wounds on all body surfaces, including the intertriginous areas, was not available. <b><i>Objectives:</i></b> The aim of this study was to validate two digital wound measurement tools for the measurement of the surface area of larger and concave wounds, using surgical wounds in patients with HS. <b><i>Methods:</i></b> This prospective observational validation study included consecutive patients with HS undergoing excision surgery in the Department of Dermatology of the Erasmus University Medical Center, Rotterdam. Wound measurements using a ruler, the tracing method, the inSight® 3-dimensional (3D) device, and the ImitoWound app were performed by three investigators. The intraclass correlation coefficients (ICCs) for concurrent validity and the intra- and inter-rater reliability were analyzed. The standard error of measurement (SEm) and minimal detectable change were calculated, and Bland-Altman plots were constructed to determine the limits of agreement. <b><i>Results:</i></b> Twenty patients with a total of 52 wounds were included. The wounds had a mean surface of 18.7 cm<sup>2</sup>. The inSight® 3D device showed an ICC of 0.987 for concurrent validity, 0.998 for intra-rater reliability, and 0.997 for inter-rater reliability. The ICCs from the ImitoWound application were 0.974, 0.978, and 0.964 for concurrent validity, intra-rater reliability, and inter-rater reliability, respectively. The SEms for intra- and inter-rater reliability were 0.95 cm<sup>2</sup> and 1.11 cm<sup>2</sup> for the inSight® 3D device and 3.33 cm<sup>2</sup> and 3.51 cm<sup>2</sup> for the ImitoWound app, respectively. <b><i>Conclusion:</i></b> Both the inSight® 3D device and the ImitoWound app demonstrated excellent concurrent validity and reliability for the surface measurements of concave wound, enabling these tools to be used reliably in clinical research and daily practice. Furthermore, it paves the way for broader application, such as telemonitoring of wound care at home.
DOI: 10.6084/m9.figshare.16664281.v4
title: supplementary data.mat

description: velocities of five moorings
DOI: 10.6084/m9.figshare.6792206.v5
title: Data for "Predicting property damage from tornadoes with zero-inflated neural networks"

description: The zipped data necessary to replicate "Predicting property damage from tornadoes with zero-inflated neural networks" by Jeremy Diaz and Maxwell Joseph (both at Earth Lab, Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder). Contains our working versions of US Census Bureau, National Land Cover Database, and Storm Events Database data.
DOI: 10.6084/m9.figshare.16577573.v1
title: Supplementary Material for: Community Intent to Activate Emergency Medical Services May Be Associated with Regional tPA Treatment

description: <b><i>Introduction:</i></b> Acute stroke treatments are underutilized in the USA. Enhancing stroke preparedness, the recognition of stroke symptoms, and intent to call emergency medical services (EMS) could reduce delay in hospital arrival thereby increasing eligibility for time-sensitive stroke treatments. Whether higher stroke preparedness is associated with higher tissue plasminogen activator (tPA) treatment rates is however uncertain. We therefore set out to determine the contribution of stroke preparedness to regional variation in tPA treatment. <b><i>Methods:</i></b> The region was defined by hospital service area (HSA). Stroke preparedness was determined by using Behavioral Risk Factor Surveillance System survey questions assessing stroke symptom recognition and intent to call 911 in response to a stroke. We used Medicare data to determine the percentage of tPA-treated hospitalized stroke patients in 2007, 2009, and 2011, adjusting for number of stroke hospitalizations in each HSA (primary outcome). We performed multivariate linear regression to estimate the association of regional stroke preparedness on log-transformed tPA treatment rates controlling for demographic, EMS, and hospital characteristics. <b><i>Results:</i></b> The adjusted percentage of stroke patients receiving tPA ranged from 1.4% (MIN) to 11.3% (MAX) of stroke/TIA hospitalizations. Across HSAs, a median (IQR) of 86% (81–90%) of responses to a witnessed stroke indicated intent to call 911, and a median (IQR) of 4.4 (4.2–4.6) out of 6 stroke symptoms was recognized. Every 1% increase in an HSA’s intent to call 911 was associated with a 0.44% increase in adjusted tPA treatment rate (<i>p</i> = 0.05). Lower accuracy of recognition of stroke symptoms was associated with higher adjusted tPA treatment rates (<i>p</i> = 0.05). <b><i>Conclusions:</i></b> There was little regional variation in intent to call EMS and stroke symptom recognition. Intent to call EMS and stroke symptom recognition are modest contributors to regional variation in tPA treatment.
DOI: 10.6084/m9.figshare.23622792.v2
title: Luecken Cite-seq human bone marrow 2021

description: Dataset published by Luecken et al. 2021 which contains data from human bone marrow measured through joint profiling of single-nucleus RNA and Antibody-Derived Tags (ADTs) using the 10X 3' Single-Cell Gene Expression kit with Feature Barcoding in combination with the BioLegend TotalSeq B Universal Human Panel v1.0.<b>File Description</b><i>cite_filtered.h5mu</i>: Filtered barcode by feature MuData object of concatenated donor’s raw counts from filtered barcodes. This is built from the Cell Ranger output and contains the RNA and ADT ("prot" key) data.<i>cite_raw.h5mu</i>: Unfiltered barcode by feature MuData object of concatenated donor's raw counts extracted by Cell Ranger. It contains the RNA and ADT ("prot" key) data.<i>cite_preprocessed.h5ad</i>: Fully processed AnnData object used in annotation chapter.<b>Citation</b>Luecken, M. D. <i>et al.</i> A sandbox for prediction and integration of DNA, RNA, and proteins in single cells. Thirty-fifth Conference on Neural Information Processing Systems Datasets and Benchmarks Track (2021).<br><b>Original data link</b>https://openproblems.bio/neurips_docs/data/dataset/
DOI: 10.6084/m9.figshare.26928172.v2
title: Codes for analysis, including eddy detection and Tracking

description: Eddy detection and tracking for surface and subsurface eddies, modified for the Peru-Chile EBUS from Nagai et.al. 2015.
DOI: 10.6084/m9.figshare.20170364.v1
title: Supplementary Material for: Impact of sites of metastatic dissemination on survival in advanced gastroesophageal adenocarcinoma

description: Background: Metastatic gastroesophageal adenocarcinoma (GEA) is a heterogeneous disease with an overall poor prognosis. The impact of sites of metastatic dissemination on survival is not well characterized. This study aims to evaluate whether certain sites of metastatic disease impacts survival. Methods: A retrospective analysis of 375 patients with metastatic GEA treated at the Princess Margaret Cancer Centre from 2006 to 2016 was performed. Overall survival (OS) and progression-free survival (PFS) were estimated using the Kaplan-Meier method. Cox proportional hazards regression models were used to assess the association between sites of metastases and OS adjusting for baseline patient characteristics. Results: Median duration of follow-up was 47.8 months. Median OS in this cohort was 11.8 months (95% CI: 10.2-12.9 months). Patients with lymph node only disease, compared to those with other sites of metastases, had the longest median OS (20.4 vs 10.6 months; p &lt; 0.001) and PFS (11.4 vs 6.3 months; p &lt; 0.001). On multivariable analysis adjusting for relevant clinical factors including age, sex, and ECOG PS, the presence of lung (HR 1.67, 95% CI: 1.23-2.26; p &lt; 0.001) or bone metastases (HR 1.84, 95% CI: 1.31-2.59; p &lt; 0.001) were independently associated with shorter OS. The majority of patients (68%) were treated with palliative intent first-line platinum-based chemotherapy. Conclusions: Patients with metastatic GEA have overall a poor prognosis. The presence of lung or bone metastases are independent risk factors for decreased survival. Prognostic models incorporating sites of metastasis should be considered in the clinical evaluation of metastatic GEA.
DOI: 10.6084/m9.figshare.13153955.v1
title: Supplementary Material for: Effect of Extracorporeal Blood Purification on Mortality in Sepsis: A Meta-Analysis and Trial Sequential Analysis

description: <b><i>Objective:</i></b> The objective of this study was to conduct a meta-analysis and trial sequential analysis (TSA) of published randomized controlled trials (RCTs) to determine whether mortality benefit exists for extracorporeal blood purification techniques in sepsis. <b><i>Data Sources:</i></b> A systematic search on MEDLINE, Embase, and the Cochrane Central Register of Controlled Trials for RCTs was performed. <b><i>Study Selection:</i></b> RCTs investigating the effect of extracorporeal blood purification device use on mortality among critically ill septic patients were selected. <b><i>Data Extraction:</i></b> Mortality was assessed using Mantel-Haenszel models, and <i>I</i><sup>2</sup> was used for heterogeneity. Data are presented as odds ratios (OR); 95% confidence intervals (CIs); <i>p</i> values; <i>I</i><sup>2</sup>. Using the control event mortality proportion, we performed a TSA and calculated the required information size using an anticipated intervention effect of a 14% relative reduction in mortality. <b><i>Data Synthesis:</i></b> Thirty-nine RCTs were identified, with 2,729 patients. Fourteen studies used hemofiltration (<i>n</i> = 789), 17 used endotoxin adsorption devices (<i>n</i> = 1,363), 3 used nonspecific adsorption (<i>n</i> = 110), 2 were cytokine removal devices (<i>n</i> = 117), 2 used coupled plasma filtration adsorption (CPFA) (<i>n</i> = 207), 2 combined hemofiltration and perfusion (<i>n</i> = 40), and 1 used plasma exchange (<i>n</i> = 106). On conventional meta-analysis, hemofiltration (OR 0.56 [0.40–0.79]; <i>p</i> &lt; 0.001; <i>I</i><sup>2</sup> = 0%), endotoxin removal devices (OR 0.40 [0.23–0.67], <i>p</i> &lt; 0.001; <i>I</i><sup>2</sup> = 71%), and nonspecific adsorption devices (OR 0.32 [0.13–0.82]; <i>p</i> = 0.02; <i>I</i><sup>2</sup> = 23%) were associated with mortality benefit, but not cytokine removal (OR 0.99 [0.07–13.42], <i>p</i> = 0.99; <i>I</i><sup>2</sup> = 64%), CPFA (OR 0.50 [0.10–2.47]; <i>p</i> = 0.40; <i>I</i><sup>2</sup> = 64%), or combined hemofiltration and adsorption (OR 0.71 [0.13–3.79]; <i>p</i> = 0.69; <i>I</i><sup>2</sup> = 0%). TSA however revealed that based on the number of existing patients recruited for RCTs, neither hemofiltration (TSA-adjusted CI 0.29–1.10), endotoxin removal devices (CI 0.05–3.40), nor nonspecific adsorption devices (CI 0.01–14.31) were associated with mortality benefit. <b><i>Conclusion:</i></b> There are inadequate data at present to conclude that the use of extracorporeal blood purification techniques in sepsis is beneficial. Further adequately powered RCTs are required to confirm any potential mortality benefit, which may be most evident in patients at greatest risk of death.
DOI: 10.6084/m9.figshare.28691480.v4
title: Proofs

description: Proofs
DOI: 10.6084/m9.figshare.855578.v1
title: LPBA40 MALF Labels

description: MALF labels for the LPBA40 data set.
DOI: 10.6084/m9.figshare.14269973.v1
title: Parkinson-posture

description: Files showing the raw data<br>
DOI: 10.6084/m9.figshare.24649935.v2
title: Comparative evaluation of bioinformatic tools for virus-host prediction and their application to a highly diverse community in the Cuatro Ciénegas Basin, Mexico

description: Supplementary material for "Comparative evaluation of bioinformatic tools for virus-host prediction and their application to a highly diverse community in the Cuatro Ciénegas Basin, Mexico".
DOI: 10.6084/m9.figshare.14161940.v1
title: Supplementary Information

description: Raw input and data for paper with doi: 10.1063/5.0049522
DOI: 10.6084/m9.figshare.21940120.v1
title: OSTEOLOGY AND RELATIONSHIPS OF <i>CUMNORIA PRESTWICHII</i> (ORNITHISCHIA: ORNITHOPODA) FROM THE LATE JURASSIC OF OXFORDSHIRE, UK

description: The iguanodontian dinosaurs have a fossil record that extends from the Middle Jurassic to the end of the Cretaceous, by which time they had diversified to become the dominant herbivores of Laurasian ecosystems. They are historically important because fossils of British iguanodontians were among the first to be recognised as the gigantic reptiles that formed the basis for naming Dinosauria. However, the early stages of their evolution remain obscure because of a sparse fossil record, and taxonomic and systematic controversies among non-hadrosaurid iguanodontians abound. In order to shed light on the early stages of iguanodontian evolution, new discoveries and re-interpretations of historic specimens are crucial. Here, we redescribe the Late Jurassic early-branching iguanodontian <i>Cumnoria prestwichii</i> from the Kimmeridge Clay Formation of Oxfordshire, UK, and assess its phylogenetic position. We find that <i>Cumnoria</i> is distinct from the North American taxon <i>Camptosaurus</i>, with which it was previously synonymized, and is valid, possessing two autapomorphies of the pectoral girdle. We recover its phylogenetic position as a non-ankylopollexian iguanodontian. <i>Cumnoria</i> represents one of just four valid ornithopod taxa from the Jurassic of Europe.
DOI: 10.6084/m9.figshare.3492719.v1
title: Long-wavelength OCT repeatability dataset.tif

description: Repeatability dataset comprising OCT (20°x20°; 512x128) images obtained on 25 participants, at two separate imaging sessions, using a long-wavelength Spectral Domain OCT.
DOI: 10.15468/dl.7use8d
title: Occurrence Download

description: A dataset containing 50399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Mytilus edulis Linnaeus, 1758"
 ]
}

 The dataset includes 50399 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009358-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fyybnjkw7v
title: Synthetic (DeepFake) Knee Osteoarthritis X-ray Images from Generative Adversarial Neural Networks

description: This dataset contains three archives of images; The archive named '320K DeepFake KOA Images' contains 320,000 DeepFake (synthetic) x-ray images generated with the method described in the reference article. The remaining archives, 'KNN Model Validation' and 'Survey Items' include the images used to perform the corresponding tasks in the reference article.
DOI: 10.6084/m9.figshare.7892522.v1
title: gVCF_NA18945

description: 1000 Genomes gVCF mapped to hs37d5 for NA18945. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.28830023.v2
title: PlantConnectomeKG2025-04-21.csv

description: Knowledge Graph constructed by parsing through Arabidopsis Thaliana gene- linked open source papers on NCBI with GPT-4o
DOI: 10.17632/rwwfg3r5yc
title: Analysis on a database of ship accidents in port areas [Dataset]

description: Results of an analysis on a database of vessel accidents in port areas are here collected. The data were gathered within the framework of the project ISY PORT (Integrated SYstem for navigation risk mitigation in PORTs). The analysis includes distribution of accidents in port areas categorized by age of the ship at the time of the accident, ship’s category, causality event, weather conditions and number of fatalities/injured/lost at sea.

PLEASE REFERENCE:
Marino, M., Cavallaro, L., Castro, E., Musumeci, R. E., Martignoni, M., Roman, F., Foti, E. (2023), "New frontiers in the risk assessment of ship collision", Ocean Engineering, Elsevier.
DOI: 10.6084/m9.figshare.11996994.v1
title: Raw Data of Fungi

description: Long-Term Continuously Monocropped Peanut Significantly Changed the Abundance and Composition of Soil Fungal Communities
DOI: 10.6084/m9.figshare.22041191.v1
title: ProjecTILs human reference atlas of tumor-infiltrating and blood Dendritic Cells (DC), version 1

description: ProjecTILs human reference atlas of blood and tumor-infiltrating Dendritic Cells (DC), generated by semi-supervised STACAS integration of 11 scRNA-seq datasets spanning 5 cancer types. The datasets were obtained from Gerhard et al. JEM, 2020, as well as Villani et al. Science, 2017, for the blood samples. The dataset is available as a Seurat object, with subtype labels (functional.cluster), sample of origin and several other measurement for each cell stored in the object metadata. The object can be directly used as a reference atlas for ProjecTILs (Andreatta et al. Nat Comms 2021).
DOI: 10.6084/m9.figshare.13233353.v5
title: Han R. et al. 2020.rar

description: Extract the compressed file and there are two files:<br>The file of 'statistical data' includes the database that was used to statistical analysis;<br>The file of 'graphic data' includes all values used to build graphs, including means, standard error of mean and other measures reported.
DOI: 10.6084/m9.figshare.19918861.v1
title: stickels2021highly_Slide-seqV2_Mouse_Hippocampus

description: stickels2021highly_Slide-seqV2_Mouse_Hippocampus(2 files)
DOI: 10.6084/m9.figshare.20318241.v1
title: 2022-v2-9classes-AsturApple-SIZE224-train-dev-test.hdf5

description: The database is in format hdf5 and is composed of 6108 images 224x224 in size belonging to 9 different classes: 'BLANQUINA' 'CARRIO' 'FLORINA' 'FUENTES' 'PRIETA' 'RAXAO' 'REINETA ENCARNADA' 'REINETA PINTA' 'REINETA ROJA DEL CANADA' These varieties are common in the Nortwest of Spain, Most of them are used in cider production. This database is already split in three set of images: train, dev and testz. Train images are the 80% of total 10% dev (validation) and 10% test. In the file the labels associated with each image are also stored in the classic form of one hot encode. <br>
DOI: 10.6084/m9.figshare.5129692.v1
title: Supplementary Material for: Fibroblasts and Mesenchymal Stromal/Stem Cells Are Phenotypically Indistinguishable

description: <b><i>Background/Aims:</i></b> Human mesenchymal stromal/stem cells (MSCs), derived from many different tissues, are characterized by a fibroblast-like morphology, the expression of certain cell surface markers and their ability to differentiate into adipocytes, chondrocytes and osteoblasts. A number of studies have shown that MSCs share many characteristics with fibroblasts; however, there is no well-defined set of phenotypic characteristics that could distinguish between these 2 types of cells. <b><i>Methods:</i></b> We used 4 well-established human fibroblast strains from 3 different tissue sources and several human MSC strains from 2 different tissue sources to compare the phenotypic and immunological characteristics of these cells. <b><i>Results:</i></b> Fibroblast strains had a similar morphology to MSCs, expressed the same cell surface markers as MSCs and could also differentiate into adipocytes, chondrocytes and osteoblasts. Also, similar to MSCs, these fibroblasts were capable of suppressing T cell proliferation and modulating the immunophenotype of macrophages. We also show that MSCs deposit extracellular matrices of collagen type I and fibronectin, and express FSP1 in patterns similar to fibroblasts. <b><i>Conclusions:</i></b> Based on currently accepted definitions for cultured human MSCs and fibroblasts, we could not find any immunophenotypic property that could make a characteristic distinction between MSCs and fibroblasts.
DOI: 10.17632/hsb6dw9ftf
title: Data for: Macroscopic residual stress, microscopic internal strain and properties in different YBa2Cu3O7-x heterogeneous systems
DOI: 10.6084/m9.figshare.28398113.v1
title: Dataset for Anomalous Solute Transport in Porous Fractured Media Under Asynchronous Hydraulic Changes

description: This dataset accompanies the study <b>"Anomalous solute transport in porous fractured media"</b> by Ma et al., providing <b>experimental data, numerical simulation results, and fitting analyses</b>. It includes <b>solute breakthrough curve data</b> under different <b>hydraulic asynchronous conditions</b>, with varying head differences during either the <b>injection phase</b> or the <b>release phase</b>. Additionally, it contains <b>simulated data on the effects of fracture aperture, matrix permeability, and matrix porosity on solute transport</b>, along with <b>fitting parameters and intermediate simulation data with corresponding programs</b>. This dataset supports further research on <b>anomalous solute transport mechanisms in fractured porous media</b>.