cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id411519.1
title: StrainInfo SI-ID 411519.1

description: StrainInfo dataset 411519 about a strain of Chryseobacterium shandongense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411602.1
title: StrainInfo SI-ID 411602.1

description: StrainInfo dataset 411602 about a strain of Pseudoalteromonas atlantica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411603.1
title: StrainInfo SI-ID 411603.1

description: StrainInfo dataset 411603 about a strain of Actinomyces israelii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411604.1
title: StrainInfo SI-ID 411604.1

description: StrainInfo dataset 411604 about a strain of Lutibaculum baratangense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411605.1
title: StrainInfo SI-ID 411605.1

description: StrainInfo dataset 411605 about a strain of Alcaligenaceae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411606.1
title: StrainInfo SI-ID 411606.1

description: StrainInfo dataset 411606 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411702.1
title: StrainInfo SI-ID 411702.1

description: StrainInfo dataset 411702 about a strain of Burkholderia gladioli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411703.1
title: StrainInfo SI-ID 411703.1

description: StrainInfo dataset 411703 about a strain of Corynebacterium coyleae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411704.1
title: StrainInfo SI-ID 411704.1

description: StrainInfo dataset 411704 about a strain of Aggregatibacter aphrophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411705.1
title: StrainInfo SI-ID 411705.1

description: StrainInfo dataset 411705 about a strain of Haemophilus influenzae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411520.1
title: StrainInfo SI-ID 411520.1

description: StrainInfo dataset 411520 about a strain of Bacteroides salyersiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411521.1
title: StrainInfo SI-ID 411521.1

description: StrainInfo dataset 411521 about a strain of Actinotignum schaalii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411522.1
title: StrainInfo SI-ID 411522.1

description: StrainInfo dataset 411522 about a strain of Staphylococcus aureus subsp. aureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411607.1
title: StrainInfo SI-ID 411607.1

description: StrainInfo dataset 411607 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411608.1
title: StrainInfo SI-ID 411608.1

description: StrainInfo dataset 411608 about a strain of Peptoniphilus lacrimalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411609.1
title: StrainInfo SI-ID 411609.1

description: StrainInfo dataset 411609 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411706.1
title: StrainInfo SI-ID 411706.1

description: StrainInfo dataset 411706 about a strain of Rhodotorula mucilaginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411707.1
title: StrainInfo SI-ID 411707.1

description: StrainInfo dataset 411707 about a strain of Glutamicibacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411708.1
title: StrainInfo SI-ID 411708.1

description: StrainInfo dataset 411708 about a strain of Staphylococcus lugdunensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411709.1
title: StrainInfo SI-ID 411709.1

description: StrainInfo dataset 411709 about a strain of Achromobacter xylosoxidans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411523.1
title: StrainInfo SI-ID 411523.1

description: StrainInfo dataset 411523 about a strain of Actinomyces oris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411524.1
title: StrainInfo SI-ID 411524.1

description: StrainInfo dataset 411524 about a strain of Enterococcus faecium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411525.1
title: StrainInfo SI-ID 411525.1

description: StrainInfo dataset 411525 about a strain of Chryseomonas luteola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411526.1
title: StrainInfo SI-ID 411526.1

description: StrainInfo dataset 411526 about a strain of Mixta calida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411610.1
title: StrainInfo SI-ID 411610.1

description: StrainInfo dataset 411610 about a strain of Haemophilus parainfluenzae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411611.1
title: StrainInfo SI-ID 411611.1

description: StrainInfo dataset 411611 about a strain of Haemophilus influenzae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411612.1
title: StrainInfo SI-ID 411612.1

description: StrainInfo dataset 411612 about a strain of Actinomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411613.1
title: StrainInfo SI-ID 411613.1

description: StrainInfo dataset 411613 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411710.1
title: StrainInfo SI-ID 411710.1

description: StrainInfo dataset 411710 about a strain of Pseudomonas marginalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411711.1
title: StrainInfo SI-ID 411711.1

description: StrainInfo dataset 411711 about a strain of Dermabacter hominis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411712.1
title: StrainInfo SI-ID 411712.1

description: StrainInfo dataset 411712 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411713.1
title: StrainInfo SI-ID 411713.1

description: StrainInfo dataset 411713 about a strain of Enterobacter asburiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411527.1
title: StrainInfo SI-ID 411527.1

description: StrainInfo dataset 411527 about a strain of Acinetobacter wuhouensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411614.1
title: StrainInfo SI-ID 411614.1

description: StrainInfo dataset 411614 about a strain of Helicobacter brantae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411615.1
title: StrainInfo SI-ID 411615.1

description: StrainInfo dataset 411615 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411616.1
title: StrainInfo SI-ID 411616.1

description: StrainInfo dataset 411616 about a strain of Brucella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411714.1
title: StrainInfo SI-ID 411714.1

description: StrainInfo dataset 411714 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411715.1
title: StrainInfo SI-ID 411715.1

description: StrainInfo dataset 411715 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411716.1
title: StrainInfo SI-ID 411716.1

description: StrainInfo dataset 411716 about a strain of Mycobacterium abscessus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411728.1
title: StrainInfo SI-ID 411728.1

description: StrainInfo dataset 411728 about a strain of Staphylococcus aureus subsp. aureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411617.1
title: StrainInfo SI-ID 411617.1

description: StrainInfo dataset 411617 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411618.1
title: StrainInfo SI-ID 411618.1

description: StrainInfo dataset 411618 about a strain of Prevotella brunnea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411619.1
title: StrainInfo SI-ID 411619.1

description: StrainInfo dataset 411619 about a strain of Erysipelothrix rhusiopathiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411620.1
title: StrainInfo SI-ID 411620.1

description: StrainInfo dataset 411620 about a strain of Actinobaculum massiliense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411717.1
title: StrainInfo SI-ID 411717.1

description: StrainInfo dataset 411717 about a strain of Sphingomonas koreensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411718.1
title: StrainInfo SI-ID 411718.1

description: StrainInfo dataset 411718 about a strain of Gemella asaccharolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411719.1
title: StrainInfo SI-ID 411719.1

description: StrainInfo dataset 411719 about a strain of Mageeibacillus indolicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411720.1
title: StrainInfo SI-ID 411720.1

description: StrainInfo dataset 411720 about a strain of Mixta theicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411729.1
title: StrainInfo SI-ID 411729.1

description: StrainInfo dataset 411729 about a strain of Streptococcus vestibularis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411730.1
title: StrainInfo SI-ID 411730.1

description: StrainInfo dataset 411730 about a strain of Bifidobacterium imperatoris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411731.1
title: StrainInfo SI-ID 411731.1

description: StrainInfo dataset 411731 about a strain of Streptococcus australis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411732.1
title: StrainInfo SI-ID 411732.1

description: StrainInfo dataset 411732 about a strain of Pseudomonas putida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411621.1
title: StrainInfo SI-ID 411621.1

description: StrainInfo dataset 411621 about a strain of Cupriavidus basilensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411622.1
title: StrainInfo SI-ID 411622.1

description: StrainInfo dataset 411622 about a strain of Dietzia maris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411623.1
title: StrainInfo SI-ID 411623.1

description: StrainInfo dataset 411623 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411624.1
title: StrainInfo SI-ID 411624.1

description: StrainInfo dataset 411624 about a strain of Listonella anguillarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411721.1
title: StrainInfo SI-ID 411721.1

description: StrainInfo dataset 411721 about a strain of Clostridium perfringens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411722.1
title: StrainInfo SI-ID 411722.1

description: StrainInfo dataset 411722 about a strain of Streptococcus infantarius subsp. coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411723.1
title: StrainInfo SI-ID 411723.1

description: StrainInfo dataset 411723 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id411724.1
title: StrainInfo SI-ID 411724.1

description: StrainInfo dataset 411724 about a strain of Streptococcus constellatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.6084/m9.figshare.26065345
title: Annotation-free prediction of microbial dioxygen utilization

description: Aerobes require dioxygen to grow; anaerobes do not. But nearly all microbes -- aerobes, anaerobes, and facultative organisms alike -- express enzymes whose substrates include oxygen, if only for detoxification. This presents a challenge when trying to assess which organisms are aerobic from genomic data alone. This challenge can be overcome by noting that oxygen utilization has wide-ranging effects on microbes: aerobes typically have larger genomes encoding distinctive oxygen-utilizing enzymes, for example. These effects permit high-quality prediction of oxygen utilization from annotated genome sequences, with several models displaying ~80% accuracy on a ternary classification task wherein blind guessing is only 33% accurate. Since genome annotation is compute-intensive and relies on many assumptions, we asked if annotation-free methods also perform well. We discovered that simple and efficient models based entirely on genome sequence content -- e.g. triplets of amino acids -- perform as well as intensive annotation-based classifiers, enabling rapid processing of genomes. We further show that amino acid trimers are useful because they encode information about protein composition and phylogeny. To showcase the utility of rapid prediction, we estimated the prevalence of aerobes and anaerobes in diverse natural environments cataloged in the Earth Microbiome Project.Focusing on a well-studied oxygen gradient in the Black Sea, we found quantitative correspondence between local chemistry (oxygen sulfide concentration ratio) and the composition of microbial communities. We therefore suggest that statistical methods like ours might be used to estimate, or "sense,'' pivotal features of the chemical environment using DNA sequencing data.<br>
DOI: 10.60712/si-id411733.1
title: StrainInfo SI-ID 411733.1

description: StrainInfo dataset 411733 about a strain of Burkholderia multivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.