cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yddm3m
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Halostachys caspica (M.Bieb.) C.A.Mey., Ruppia maritima L.)",
 "Year 2000-2025"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009580-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5128294.v1
title: Supplementary Material for: Dietary Fiber Consumption Decreases the Risks of Overweight and Hypercholesterolemia in Japanese Children

description: <b><i>Aims:</i></b> It remains inconclusive whether high dietary fiber intake decreases the risk of obesity, hypercholesterolemia or high blood pressure during childhood. Therefore, this study investigated the relationships of dietary fiber intake with weight status and related clinical parameters among Japanese children. <b><i>Methods:</i></b> We analyzed the data of 5,600 subjects aged 10-11 years, between 2006 and 2010. Fiber intake was assessed using the Brief-type Diet History Questionnaire. Body height and weight and blood pressure were measured. Serum levels of total cholesterol, low- and high-density lipoprotein cholesterol and triglycerides were analyzed. Fiber intake was categorized into quintiles, and multivariate models were used to adjust for lifestyle factors. <b><i>Results:</i></b> Total fiber intake decreased the risks of overweight and high total cholesterol (OR Quintile 5 vs. Quintile 1 overweight: 0.71 for boys, 0.40 for girls; total cholesterol: 0.60 for boys, 0.66 for girls). Water-soluble fiber intake was associated with a lower risk of high blood pressure, although the ORs were not significant. <b><i>Conclusions:</i></b> Increasing the dietary fiber intake in Japanese children may have favorable effects on overweight and hypercholesterolemia.
DOI: 10.6084/m9.figshare.27173871.v1
title: Yak milk

description: To study the relationship between single nucleotide polymorphisms (SNPs) in these genes and yak milk quality. A total of 172 Gannan Yaks were genotyped using Illumina Yak cGPS 7K liquid chip. Detect the mutation.
DOI: 10.6084/m9.figshare.1506749.v1
title: cloud2_seqs_ad

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.9973610.v1
title: CTRL_R1

description: HIF1 PROJECT DATA - CTRL R1
DOI: 10.6084/m9.figshare.14554230.v1
title: Supplementary Material for: Motivational Interviewing for Cannabis Use Disorders: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Cannabis is one of the most used drugs worldwide. There is no gold standard treatment for cannabis use disorder (CUD). Motivational interviewing (MI) has shown efficacy in some substance use disorders. Therefore, a systematic review was conducted to assess the effectiveness of MI in CUD. <b><i>Methods:</i></b> Randomized controlled trials or open-label studies published until September 2019 from 3 different databases (Pubmed, Scopus, and PsycINFO) were included, following the PRISMA guidelines and a predetermined set of criteria for article selection. Meta-analyses were conducted. The end point was determined as month 3, and 4 outcomes were analysed (abstinence rates, reduction in frequency of use, reduction in quantity of use, and reduction in cannabis use disorder symptoms) in 2 populations (adolescents and adults). <b><i>Results:</i></b> Forty studies were identified, of which 24 were performed in adults and 16 in adolescents. MI showed efficacy in achieving abstinence in both adults (odds ratio [OR] = 3.84, 95% confidence interval [CI] 2.40–6.16, <i>p</i> &lt; 0.0001) and adolescents (OR = 2.02, 95% CI 1.42–2.89, <i>p</i> &lt; 0.0001). MI showed efficacy in reducing frequency and quantity of use in adults but not in adolescents. Those adults who were in the MI group consumed less joints per day than those in the control group (mean difference = −0.69 joints per day, 95% CI −0.84 to −0.53, <i>p</i> &lt; 0.001), and they consumed on less days per month (mean difference = −3.9 days per month, 95% CI −7.47 to −0.34, <i>p</i> = 0.0317) than those in the control group. <b><i>Conclusions:</i></b> MI is an effective intervention to reduce cannabis use and achieve abstinence, especially among adults and patients with no prior history of psychotic disorder. Further investigation is needed to assess the effect on CUD symptoms. MI should be included in guidelines for treating cannabis use disorder as one of the essential psychological interventions.
DOI: 10.6084/m9.figshare.20097521.v1
title: THE DYSPHAGIA INVESTIGATION: IS THERE STILL SPACE FOR THE VIDEOFLUOROSCOPIC METHOD?

description: ABSTRACT - BACKGROUND: Dysphagia can lead to aspiration pneumonia, impacting the nutritional status and quality of life of the patient. The videofluoroscopy is highlighted for allowing both a real-time evaluation and the recording of the images for later review and analysis. AIM: This study aimed to describe the characteristics of the population referred for videofluoroscopy and its value as an investigation method. METHODS: A descriptive and retrospective study was conducted. Exams were analyzed in lateral and anteroposterior views and reviewed using the frame-by-frame analysis software. The variables analyzed were an indication of the exam, previous diseases, dynamics of the oral and pharyngeal phases, and the degree of penetration/aspiration. RESULTS: A total of 141 exams were analyzed. The study population had a median age of 66.24±17.78 years. For the indication of the exam, the investigation of dysphagia was highlighted (n=87, 61.7%) and for previous conditions, diverticulum (n=13, 9.2%), pharyngeal bar (n=12, 8.51%), and stroke and Parkinson’s disease (n=9, 6.4%) were highlighted. In the oral phase, 45 (31.9%) patients had a premature loss, and 108 (76.6%) patients had normal transit time. However, 100 (70.9%) had inadequate ejection. In the pharyngeal phase, 119 (84.4%) had efficient laryngeal displacement and 107 (75.9%) had an adequate opening of the upper esophageal sphincter. The beginning of the pharyngeal phase was classified as inadequate in 131 (92.9%) patients, and 80 (56.74%) had pharyngeal residue. Notably, 100 (70.9%) patients had grade 1 on the penetration/aspiration scale. CONCLUSION: Despite the didactic division of phases, swallowing is complex and has transition stages. Videofluoroscopy is the only method for evaluating all phases of swallowing and its events.
DOI: 10.6084/m9.figshare.12062370.v1
title: AI_pests_insecticides_yield.csv

description: Data from Australian cotton fields on mirid pests, insecticide spraying and yield.Data and R code related to the paper entitled: "Better outcomes for pest pressure, insecticide use and yield in less intensive agricultural landscapes”<br>
DOI: 10.6084/m9.figshare.5129854.v1
title: Supplementary Material for: Enumeration and Molecular Characterisation of Circulating Tumour Cells in Endometrial Cancer

description: <b><i>Background:</i></b> This is a feasibility study to determine whether circulating tumour cells (CTCs) are detectable and suitable for molecular profiling in advanced endometrial cancer (aEC). <b><i>Method:</i></b> Between October 2012 and February 2014, 30 patients with aEC had baseline and up to 3 follow-up samples. CTCs and stathmin expression were evaluated using the CellSearch platform. Epithelial cell adhesion molecule (EpCAM) and stathmin immunohistochemistry were performed on FFPE tumour tissue. <b><i>Results:</i></b> Eighteen from 30 (60%) patients had detectable CTCs during study [1 CTC (n = 7), 2 (n = 4), 3 (n = 1), 4 (n = 2), 7 (n = 1), 8 (n = 1), 22 (n = 1), 172 (n = 1) in 7.5 ml blood]. Ten from 18 patients had between 50 and 100% of detectable CTCs that were stathmin positive. More CTC-positive than CTC-negative patients had non-endometrioid versus endometrioid histology, tumour size ≥5 versus &lt;5 cm, higher-stage disease and worse survival [hazard ratio 3.3, p &gt; 0.05, 95% confidence interval 0.7-16.2]. Twenty-one tumour blocks were tested for EpCAM and stathmin immunohistochemistry (IHC). Stathmin tumour immunostaining scores (TIS) on IHC were higher in CTC-positive patients. <b><i>Conclusion:</i></b> CTC enumeration and molecular profiling with stathmin on the CellSearch platform is feasible in aEC. Stathmin TIS on IHC, a known prognostic marker in EC, was associated with CTC positivity.
DOI: 10.6084/m9.figshare.28685312.v20
title: Supplementary Material for: Evidence on protective factors for dementia and cognitive impairment in older adults: an umbrella review

description: Introduction: Dementia represents a global public health challenge, and no conclusive evidence exists on how to prevent its onset or at least reduce the risk. This umbrella review aims to identify interventions or exposures that can reduce the incidence of dementia or cognitive impairment.
Methods: A search of meta-analyses and systematic reviews published from 2018 to 2025 (January) was conducted across four databases. Articles assessing associations between interventions or exposures to protective factors and incidence of dementia or cognitive decline in non-demented older adults were selected.
Results: Out of 6,324 articles, 177 underwent full-text screening, and 17 were included. They showed that psychosocial factors (social engagement, purpose in life, life satisfaction, and cognitive reserve) and influenza vaccination protect against dementia. Evidence on antihypertensives is promising, while evidence on low-dose aspirin is promising yet inconclusive. No clear results emerged for both single- and multi-domain lifestyle interventions.
Conclusions: These results offer new insight on potential targets for dementia prevention, a global public health priority. In particular, favorable psychosocial factors and influenza vaccination, undervalued in the scientific debate on dementia prevention, emerged as promising and feasible targets for preventive initiatives. Future research should focus on fine-tuning interventions to promote brain health, exploring their underlying mechanisms, and developing targeted and personalized strategies for specific population subgroups.
DOI: 10.6084/m9.figshare.26503690.v2
title: Spatiotemporal freshwater eutrophication characterization factors under climate change

description: Global freshwater eutrophication characterization factors at 30 arc-min resolution. Datasets are provided annually from 2021 till 2100, under eight different climate change scenarios:RCP = 2.6 and GCM = GFDL-ESM2MRCP = 2.6 and GCM = HadGEM2-ESRCP = 2.6 and GCM = IPSL-CM5A-LRRCP = 2.6 and GCM = MIROC5RCP = 6.0 and GCM = GFDL-ESM2MRCP = 6.0 and GCM = HadGEM2-ESRCP = 6.0 and GCM = IPSL-CM5A-LRRCP = 6.0 and GCM = MIROC5
DOI: 10.6084/m9.figshare.12961508.v1
title: Supplementary Material for: Erosive Tooth Wear among Adults in Lithuania: A Cross-Sectional National Oral Health Study

description: <b><i>Introduction:</i></b> Erosive tooth wear has a multifactorial origin, where multiple risks contribute to its initiation and subsequent progression. The prevalence of tooth wear varies among countries; therefore, national studies are needed to examine the prevalence of this condition and its associated determinants. <b><i>Materials and Methods:</i></b> A sample of this national study included a total of 1,397 adults (response rate of 52%). Severity and number of teeth with erosive tooth wear, caries experience (D<sub>3</sub>MFS), and fluorosis were assessed clinically. A self-reported questionnaire inquired about sociodemographics, oral health behavior, diet, and general health. Fluoride levels in drinking water at the recruitment areas were also recorded. Data were analyzed by bivariate and multivariate methods. <b><i>Results:</i></b> The prevalence of erosive tooth wear in enamel and dentin combined was 59% among 35- to 44-year-old, 75% among 45- to 54-year-old, 70% among 55- to 64-year-old, and 66% among 65- to 74-year-old males. The prevalence among females in the respective age groups was 44, 60, 63, and 59%. Erosive tooth wear in enamel was associated with a lower fluoride level (≤1 ppm) in the drinking water (OR 2.1, 95% CI 1.1–4.2). Erosive tooth wear in dentin was positively associated with male gender (OR 1.7, 95% CI 1.1–2.5), periurban/rural residency (OR 1.6, 95% CI 1.1–2.4), older age (OR 1.6, 95% CI 1.3–1.9), presence of reflux (OR 3.3, 95% CI 1.0–10.9), and negatively with higher D<sub>3</sub>MFS scores (OR 0.7, 95% CI 0.5–0.9). <b><i>Conclusions:</i></b> The prevalence of erosive tooth wear in enamel and dentin was relatively high in Lithuania; the erosive tooth wear in enamel and dentin combined was 52% among 35- to 44-year-olds, 68% among 45- to 54-year-olds, 67% among 55- to 64-year-olds, and 63% among 65- to 74-year-olds. Lower fluoride level in drinking water was associated with erosive tooth wear in enamel. Male gender, residency in periurban/rural areas, older age, and presence of acid reflux were associated with higher odds, while higher D<sub>3</sub>MFS scores were associated with lower odds for erosive tooth wear in dentin. These results can be used to plan dental public health prevention.
DOI: 10.6084/m9.figshare.25604205.v1
title: MAGs-hifi and nanopore

description: 659 MAGs for HiFi and Nanopore sequencing, rumen from cattle and goat
DOI: 10.6084/m9.figshare.14304800.v1
title: Influence of Root Canal Preparation on Formation of Dentinal Microcracks: A Systematic Review

description: Abstract The effect of root canal preparation technique on microcrack initiation is a controversial issue. This systematic review aimed to assess the role of root canal preparation techniques with different kinematics (manual, rotary, reciprocating, adaptive, self-adjusting file) on microcrack initiation. In vitro and in situ studies comparing the influence of at least two different root canal preparation techniques on the initiation of dentin microcracks were searched in PubMed/MEDLINE and SCOPUS up to June 5, 2018 without language and period restriction. Two authors independently reviewed all identified titles and abstracts for eligibility. Tables were generated to summarize the included studies, and the included studies were assessed for bias. Fifty-four (n=54) articles met the eligibility criteria. The results were classified according to the method used for microcrack evaluation, and most studies that used micro-computed tomography showed no formation of new cracks after root canal preparation. In general, the instrumentation techniques induced microcrack formation when the methods were destructive, irrespective of kinematics. In relation to the apex region, when the preparation working length was set as the root canal length subtracted of 1 mm, the risk of microcrack initiation reduces. The majority of the included studies had low risk of bias for all assessed domains. Our results seem to indicate that the various root canal preparation techniques considered in this study will not cause damage to the dental structure when adequately employed and the proper methodology is applied.
DOI: 10.6084/m9.figshare.17098967.v1
title: Supplementary Material for: Interactions between Genetic, Prenatal, Cortisol, and Parenting Influences on Adolescent Substance Use and Frequency: A TRAILS Study

description: <b><i>Introduction:</i></b> Dynamic relations between genetic, hormone, and pre- and postnatal environments are theorized as critically important for adolescent substance use but are rarely tested in multifactorial models. This study assessed the impact of interactions of genetic risk and cortisol reactivity with prenatal and parenting influences on both any and frequency of adolescent substance use. <b><i>Methods:</i></b> Data are from the TRacking Adolescents’ Individual Lives Survey (TRAILS), a prospective longitudinal, multi-rater study of 2,230 Dutch adolescents. Genetic risk was assessed via 3 substance-specific polygenic scores. Mothers retrospectively reported prenatal risk when adolescents were 11 years old. Adolescents rated their parents’ warmth and hostility at age 11. Salivary cortisol reactivity was measured in response to a social stress task at age 16. Adolescents’ self-reported cigarette, alcohol, and cannabis use frequency at age 16. <b><i>Results:</i></b> A multivariate hurdle regression model showed that polygenic risk for smoking, alcohol, and cannabis predicted any use of each substance, respectively, but predicted more frequent use only for smoking. Blunted cortisol reactivity predicted any use and more frequent use for all 3 outcomes. There were 2 interactions: blunted cortisol reactivity exacerbated the association of polygenic risk with any smoking and the association of prenatal risk with any alcohol use. <b><i>Conclusion:</i></b> Polygenic risk seems of importance for early use but less so for frequency of use, whereas blunted cortisol reactivity was correlated with both. Blunted cortisol reactivity may also catalyze early risks for substance use, though to a limited degree. Gene-environment interactions play no role in the context of this multifactorial model.
DOI: 10.6084/m9.figshare.21856575.v1
title: Table S5

description: <em>A list of all parameters (and their ranges) that were considered during the tuning of the models.</em>
DOI: 10.6084/m9.figshare.20260998.v1
title: Dataset for: Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS

description: Metabolomics, proteomics, and clinical data for the article "<strong>Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS"</strong> <br> <strong>Paper link: </strong>Batra*, Uni* et. al., https://molmed.biomedcentral.com/articles/10.1186/s10020-023-00609-6 <br> <strong>Code repository:</strong>https://github.com/krumsieklab/covid-ards-urine
DOI: 10.6084/m9.figshare.25845895.v1
title: Supplementary Material for: Impact of Duration of Diabetes Mellitus on Long-term Outcome in Type 2 Diabetic Patients With Primary Percutaneous Coronary Intervention After the First Myocardial Infarction

description: Background: Diabetes mellitus (DM) increases the risk of mortality in patients with acute myocardial infarction (AMI). The impact of the diabetes duration on the long-term outcome of those with percutaneous coronary intervention (PCI) after the first AMI is unclear. In this study, we evaluated the predictive value of diabetes duration in the occurrence of major adverse cardiovascular and cerebrovascular events (MACCEs). Methods: A total of 394 type 2 DM patients with PCI after the first AMI were enrolled and were divided into two groups by the diabetes duration. A short-DM group with diabetes duration of &lt; 5 years and a long-DM group with a duration of ≥ 5 years. The clinical endpoint was MACCEs. Results: Multivariate Cox regression analysis found that the diabetes duration was independently associated with increased occurrence of MACCEs [HR 1.512, 95% CI: (1.033, 2.215), p = 0.034], along with hypertension, Killip class III or IV, creatinine, multivessel disease, and continuous hypoglycemic therapy. After adjusting for the confounding variables, a nested Cox model showed that diabetes duration was still an independent risk factor of MACCEs [HR 1.963, 95% CI: (1.376, 2.801), p &lt; 0.001]. The Kaplan–Meier survival curve illustrated a significantly high risk of MACCEs (HR 2.045, p &lt; 0.0001) in long-duration DM patients. After propensity score matching, a longer diabetes duration was associated with an increased risk of MACCE occurrence. Conclusion: Long-duration diabetes was independently associated with poor clinical outcomes after PCI in patients with their first myocardial infarction, Despite the diabetes duration, continuous hypoglycemic therapy significantly improved long-term clinical outcomes.
DOI: 10.34740/kaggle/dsv/11636261
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.6084/m9.figshare.9642905.v1
title: Lipid analysis pmol.xlsx

description: 2x10<sup>7</sup>CTRL and human neutral sphingomyelinase 2 deficient Jurkat cells were starved in RPMI/0.5ûS for 2 hrs and left unstimulated or stimulated for 10 min with the anti-CD3 (clone UCHT-1) crosslinked with the goat anti-mouse IgG (both 5 mikrog/ml). Plasma membranes were isolated by Minute Plasma Membrane Protein Isolation Kit (Invent Biotechnologies, Inc., England) according to manufacturers' protocol. Up to 4 isolations were pooled for one plasma membrane preparation used for lipid analysis. Three preparations were analyzed for each type of cells or stimulations. Mass spectrometry-based lipid analysis was performed by Lipotype GmbH (Dresden, Germany) as described (Sampaio et al., 2011).
DOI: 10.6084/m9.figshare.23529336.v1
title: Codes and data used in the study.

description: This zip contains the code and data used in the paper "Generating lane-level road networks from high-precision trajectory data with lane-changing behavior analysis". Include high-precision trajectory data and lane-level road network generation codes.
DOI: 10.6084/m9.figshare.20675151.v1
title: gene data_IPV.xlsx

description: Genetic raw data from the " <strong>Association of High Intra-patient Variability in Tacrolimus Exposure with Calcineurin Inhibitor Nephrotoxicity in Kidney Transplantation "</strong> <br> <br>
DOI: 10.6084/m9.figshare.13573721.v1
title: Supplementary Material for: Birthweight and Environmental Conditions Impact Skin Barrier Adaptation in Neonates Receiving Natural Oil Massage

description: <b><i>Introduction:</i></b> Skin interventions have been implemented to reduce neonatal mortality, demonstrating the skin’s role in neonatal innate immunity. We examined the impact of birthweight and environmental conditions on skin integrity in infants receiving oil massage in rural Nepal. <b><i>Methods:</i></b> In a community-based cluster randomized controlled trial, 991 premature and full-term infants were grouped by birthweight as: (1) 920–1,560 g, (2) 1,570–2,450 g, (3) 2,460–2,990 g, and (4) 3,000–4,050 g and by high or low heat index (HI). Skin integrity was measured as erythema, rash, dryness, pH, protein concentration, and transepidermal water loss (TEWL). <b><i>Results:</i></b> Skin pH was higher for the smallest (group 1) than the largest infants (group 4) and higher for group 2 than 3 and 4. Arm and leg rash differed for all 4 groups, with the least amount of rash for the smallest babies. Erythema was lower for group 1 than all others. The lower day 1 values for pH, TEWL and protein at high versus low HI remained lower over 28 days. The pH reduction was faster at high HI. Erythema (arm, leg) was more severe at high HI. Rash severity was greater at high HI for arms and legs every day. <b><i>Conclusions:</i></b> Birthweight influenced the skin response to oil massage. The smallest infants had the lowermost skin irritation, suggesting diminished ability to mount an inflammatory response. High HI may be protective for premature infants in low resource settings.
DOI: 10.6084/m9.figshare.7823825.v3
title: Mapping Counts to Knob Repeats

description: These data contain the raw counts (number of sequence reads) that mapped to knob and CentC repeats, based on the a collection of Genbank files provided in a supplementary table of the Figure. Each row is one of 33 plants (see the paper)