cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9cu1y9k
title: Modeled Top of the Grande Ronde Basalt Geomodel Unit (grtop_f)

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. The grtop_f grid represents the modeled elevation of the top of the Grande Ronde Basalt geomodel unit at a 500 foot resolution. It is one grid of a geomodel that consists of eleven grids and a spatial extent polygon shapefile. As part of a U.S. Geological Survey Groundwater Resources Program study, a three-dimensional geomodel was constructed for approximately 53,000 mi2 of the Columbia Plateau in Washington, Oregon, and Idaho. This geomodel was constructed [...]
DOI: 10.5066/p9ml040w
title: Umpqua River Oregon Garden Valley PhotoMosaic 1967

description: The Umpqua River drains 12,103 square kilometers (4,673 square miles) in southwest Oregon before flowing into the Pacific Ocean at Winchester Bay near the city of Reedsport. In cooperation with the Portland District of the U.S. Army Corps of Engineers (USACE), the USGS evaluated sediment transport and gravel storage along the downstream alluvial reaches of the North and South Umpqua Rivers and the entire mainstem Umpqua River. This includes the lower 46.8 kilometers (29.1 miles) of the North Umpqua River and the lower 122.6 kilometers (76.2 miles) of the South Umpqua River. The Umpqua River gravel transport study involved multiple analyses, including tracking patterns of historical channel change and estimation of a sediment budget. [...]
DOI: 10.6084/m9.figshare.22795817
title: Alignments and tree files

description: Sequence alignments and tree files for Figures 2–4.
DOI: 10.5066/p92al142
title: Channel centerline for the Tillamook, Trask, Wilson, Kilchis, and Miami Rivers, Oregon in 2005

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. The Tillamook Bay subbasins and Nehalem River basins encompass 1,369 and 2,207 respective square kilometers of northwestern Oregon and drain to the Pacific Ocean. The Tillamook, Trask, Wilson, Kilchis, and Miami Rivers flow into Tillamook Bay near the towns of Tillamook and Garibaldi. The Wilson and Trask River basins cover the largest areas (500 and 451 square kilometers, respectively) whereas the Tillamook and Kilchis Rivers encompass similar sized [...]
DOI: 10.5066/p9dpymf5
title: Application of fertilizer nitrogen to nonfarm land in the United States Pacific Northwest for 2002

description: This spatial data set was created by the U.S. Geological Survey (USGS) to represent the amount of fertilizer nitrogen that was applied to nonfarm land in the Pacific Northwest region of the United States (Hydro Region 17; Major River Basin 7 (MRB7)) during 2002.
DOI: 10.5066/p9pm96gu
title: Application of phosphorus generated by grazing cattle to range land in the United States Pacific Northwest for 2002

description: This spatial data set was created by the U.S. Geological Survey (USGS) to represent the amount of phosphorus generated by grazing cattle that was applied to range land in the Pacific Northwest region of the United States (Hydro Region 17; Major River Basin 7 (MRB7)) during 2002.
DOI: 10.5281/zenodo.8380858
title: V03G gene models

description: v03G SY-Mattis gene models for the ten predicted genes with high confidence within the 400 kb AVR-Rmg8 chromosome 2A interval.
DOI: 10.5066/p9ld59ol
title: Total atmospheric deposition of oxidized and reduced nitrogen in the United States Pacific Northwest for 2002

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. This spatial data set was created by the U.S. Geological Survey (USGS) to represent the amount of wet and dry deposition of oxidized and reduced nitrogen in the Pacific Northwest region of the United States (Hydro Region 17; Major River Basin 7 (MRB7)) during 2002.
DOI: 10.5066/p9hxncth
title: Soil phosphorus retention potential in the United States Pacific Northwest summarized for NHDPlus v2 catchments

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. This spatial data set was created by the U.S. Geological Survey (USGS) to represent the area of soils with different levels of phosphorus retention potential in the Pacific Northwest region of the United States (Hydro Region 17; Major River Basin 7 (MRB7)) within each incremental watershed delineated in the NHDPlus v2 dataset.
DOI: 10.5281/zenodo.8380857
title: V03G gene models

description: v03G SY-Mattis gene models for the ten predicted genes with high confidence within the 400 kb AVR-Rmg8 chromosome 2A interval.
DOI: 10.5066/p9sb0rjt
title: Total atmospheric deposition of reduced nitrogen in the United States Pacific Northwest for 2002

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. This spatial data set was created by the U.S. Geological Survey (USGS) to represent the amount of wet and dry deposition of reduced nitrogen in the Pacific Northwest region of the United States (Hydro Region 17; Major River Basin 7 (MRB7)) during 2002.
DOI: 10.5281/zenodo.8384582
title: Dataset for the paper: Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning

description: Data generated from the experiments for the paper "Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning"
DOI: 10.5281/zenodo.8384583
title: Dataset for the paper: Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning

description: Data generated from the experiments for the paper "Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning"
DOI: 10.5281/zenodo.8387292
title: Dataset for the paper: Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning

description: Data generated from the experiments for the paper "Emergent Resource Exchange and Tolerated Theft Behavior using Multi-Agent Reinforcement Learning"
DOI: 10.5066/p9n69wmt
title: Location of Septic Sewer Systems in the Pacific Northwest

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. Septic systems are useful for removing and processing human waste. However, they have the potential of leaking or discharging waste into the nearby system and increasing potential contamination of nearby streams. Data represent potential locations of septic sewers in the Pacific Northwest based on extrapolation of 1990 Census tract block group level information.
DOI: 10.34740/kaggle/dsv/6563859
title: MoviesDatasets
DOI: 10.5066/p96j3yxi
title: Umpqua River Oregon Tidal PhotoMosaic 1967

description: The Umpqua River drains 12,103 square kilometers (4,673 square miles) in southwest Oregon before flowing into the Pacific Ocean at Winchester Bay near the city of Reedsport. In cooperation with the Portland District of the U.S. Army Corps of Engineers (USACE), the USGS evaluated sediment transport and gravel storage along the downstream alluvial reaches of the North and South Umpqua Rivers and the entire mainstem Umpqua River. This includes the lower 46.8 kilometers (29.1 miles) of the North Umpqua River and the lower 122.6 kilometers (76.2 miles) of the South Umpqua River. The Umpqua River gravel transport study involved multiple analyses, including tracking patterns of historical channel change and estimation of a sediment budget. [...]
DOI: 10.25794/reference/5wwfx_bn
title: Xac-LE20
DOI: 10.5066/p93plqgb
title: Digital map of the state (political) boundaries of Mexico

description: This data set represents the state (political) boundaries of Mexico. The Digitial Chart of the World data set had incomplete state boundaries, which was the reason to create this coverage. It was digitized from a 1992 CIA map at a scale of 1:3 million. The coast line came from the Digital Chart of the world at a scale of 1:1 million. The state names were labeled from the map and an attribute to help fill the states was added. The labeling process was done manually.
DOI: 10.5517/ccdc.csd.cc2dfywp
title: CCDC 2217953: Experimental Crystal Structure Determination

description: Related Article: Carina Onneken, Tobias Morack, Julia Soika, Olga Sokolova, Niklas Niemeyer, Christian Mück-Lichtenfeld, Constantin G. Daniliuc, Johannes Neugebauer, Ryan Gilmour|2023|Nature (London)|621|753|doi:10.1038/s41586-023-06407-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f21j3
title: CCDC 2236294: Experimental Crystal Structure Determination

description: Related Article: Xiang Lyu, Changhyeon Seo, Hoimin Jung, Teresa Faber, Dongwook Kim, Sangwon Seo, Sukbok Chang|2023|Nat. Catal.|6|784|doi:10.1038/s41929-023-01014-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f223q
title: CCDC 2236312: Experimental Crystal Structure Determination

description: Related Article: Xiang Lyu, Changhyeon Seo, Hoimin Jung, Teresa Faber, Dongwook Kim, Sangwon Seo, Sukbok Chang|2023|Nat. Catal.|6|784|doi:10.1038/s41929-023-01014-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f224r
title: CCDC 2236313: Experimental Crystal Structure Determination

description: Related Article: Xiang Lyu, Changhyeon Seo, Hoimin Jung, Teresa Faber, Dongwook Kim, Sangwon Seo, Sukbok Chang|2023|Nat. Catal.|6|784|doi:10.1038/s41929-023-01014-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f24rf
title: CCDC 2236394: Experimental Crystal Structure Determination

description: Related Article: Xiang Lyu, Changhyeon Seo, Hoimin Jung, Teresa Faber, Dongwook Kim, Sangwon Seo, Sukbok Chang|2023|Nat. Catal.|6|784|doi:10.1038/s41929-023-01014-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p9onaiw0
title: Umpqua River Oregon North Umpqua PhotoMosaic 1939

description: The Umpqua River drains 12,103 square kilometers (4,673 square miles) in southwest Oregon before flowing into the Pacific Ocean at Winchester Bay near the city of Reedsport. In cooperation with the Portland District of the U.S. Army Corps of Engineers (USACE), the USGS evaluated sediment transport and gravel storage along the downstream alluvial reaches of the North and South Umpqua Rivers and the entire mainstem Umpqua River. This includes the lower 46.8 kilometers (29.1 miles) of the North Umpqua River and the lower 122.6 kilometers (76.2 miles) of the South Umpqua River. The Umpqua River gravel transport study involved multiple analyses, including tracking patterns of historical channel change and estimation of a sediment budget. [...]
DOI: 10.5066/p9bs7oo5
title: Klamath Basin Restoration Agreement Off-Project Water Program Evapotranspiration Map for April 2006

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. Hydrological Information Products for the Off-Project Water Program of the Klamath Basin Restoration Agreement U.S. Geological Survey Open-File Report 2012-1199 U.S. Department of the Interior By Daniel T. Snyder, John C. Risley, and Jonathan V. Haynes Prepared in cooperation with The Klamath Tribes Access complete report at: https://pubs.usgs.gov/of/2012/1199 Suggested citation: Snyder, D.T., Risley, J.C., and Haynes, J.V., 2012, Hydrological information [...]
DOI: 10.5523/bris.1evk6g7f9x5ec2viqondhumvnw
title: Source data for Gose et al Nature Chemical Biology 2023

description: The source data used in the study of EcoP15I described in Gose et al, Nature Chemical Biology 2023
DOI: 10.5066/p9a3grtl
title: Klamath Basin Restoration Agreement Off-Project Water Program Evapotranspiration Map for October 2004

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. Hydrological Information Products for the Off-Project Water Program of the Klamath Basin Restoration Agreement U.S. Geological Survey Open-File Report 2012-1199 U.S. Department of the Interior By Daniel T. Snyder, John C. Risley, and Jonathan V. Haynes Prepared in cooperation with The Klamath Tribes Access complete report at: https://pubs.usgs.gov/of/2012/1199 Suggested citation: Snyder, D.T., Risley, J.C., and Haynes, J.V., 2012, Hydrological information [...]
DOI: 10.5066/p91rwdwl
title: Klamath Basin Restoration Agreement Off-Project Water Program Distance to Perennial Streams and Lakes

description: These data were released prior to the October 1, 2016 effective date for the USGS’s policy dictating the review, approval, and release of scientific data as referenced in USGS Survey Manual Chapter 502.8 Fundamental Science Practices: Review and Approval of Scientific Data for Release. The Klamath Basin Restoration Agreement (KBRA) was developed by a diverse group of stakeholders, Federal and State resource management agencies, Tribal representatives, and interest groups to provide a comprehensive solution to ecological and water-supply issues in the Klamath Basin. The Off-Project Water Program (OPWP), one component of the KBRA, has as one of its purposes to permanently provide an additional 30,000 acre-feet of water per year on an [...]
DOI: 10.5285/053f88a9-011c-1824-e063-6c86abc02df5
title: POLCOMS model run in the Atlantic margin of the Northwest European continental shelf generating eastward and northward baroclinic and barotropic current vectors for 41 years from 1964.

description: The dataset consists of eastward and northward baroclinic and barotropic current vectors. The dataset is a gridded dataset covering the entire Northwest European continental shelf, extending out into the Atlantic Ocean and includes 40 depth layers. The grid resolution varies from 7.8 km to 14.2 km along the longitudinal axis and is equal to 12.3 km on the latitudinal axis. The data are daily mean averages, calculated by averaging over a 25 hour tidal cycle, and cover the period from 01 January 1964 to 31 December 2004. They were produced during a study looking at mult-decadal variability and trends in temperature of the Northwest European continental shelf. The dataset was generated by the Proudman Oceanographic Laboratory Coastal Ocean Modelling System (POLCOMS) numerical model run by the National Oceanography Centre (NOC) Liverpool as part of Natural Environment Research Council (NERC) National Capability (NC) funding. The model simulations were run on the HECTOR supercomputer managed by the University of Edinburgh. The dataset consists of 41 data files in Climate and Forecast (CF) compliant NetCDF format.
DOI: 10.5281/zenodo.8386813
title: All-atom MD trajectory TOCL:POPC (30%), 50mM KCl

description: 500-ns MD simulation of a lipid bilayer, which monolayer was composed of 40 POPC (1-Palmitoyl-2-oleoylphosphatidylcholine) molecules and 10 TLCL (tetra-linoeoyl-cardiolipin) molecules. The background electrolyte is KCl; these ions were added in that amount, which imitates 50-mM ionic force in the bulk. The water amount is large (more than 150 water molecules per lipid), allowing it to equilibrate the electric double layer at a relatively low ionic force. TIP3P water model and CHARMM36 force field were used; the double-deprotonated form of cardiolipin was used (TLCL2). Production simulation was performed with MD integrator (2-fs step, bonds to hydrogen atoms were constrained), Nose-Hoover thermostat (303K, 1-ps time constant) and Parinello-Rahman semi-isotropic barostat (5-ps time constant, water compressibility). PME was used for electrostatics; cut-off radii were set to 1.2 nm. VDW switch radius was set to 1.0 nm. Resulting trajectories deposited: <strong>COMBINED-50ps.trr</strong> [500 ns length, 50-ps step, with velocities] <strong>COMBINED-10ps-100ns.trr</strong> [last 100 ns, 10-ps step, with velocities] <strong>COMBINED.edr</strong> [500 ns length, 2-ps step] The additional ZIP archive contains intermediate TPR and MDP files and a force field folder.
description: The study was supported in 2019-2021 partly by the Russian Foundation for Basic Research (No. 19-04-00242 to Yu. A. Ermakov) and by the Ministry of Science and Higher Education of Russia (theme #AAAA-A20-120101090002-4). Simulations were performed on SMP machines at the Biophysics Department of the School of Biology, MSU.
DOI: 10.5281/zenodo.8386812
title: All-atom MD trajectory TOCL:POPC (30%), 50mM KCl

description: 500-ns MD simulation of a lipid bilayer, which monolayer was composed of 40 POPC (1-Palmitoyl-2-oleoylphosphatidylcholine) molecules and 10 TLCL (tetra-linoeoyl-cardiolipin) molecules. The background electrolyte is KCl; these ions were added in that amount, which imitates 50-mM ionic force in the bulk. The water amount is large (more than 150 water molecules per lipid), allowing it to equilibrate the electric double layer at a relatively low ionic force. TIP3P water model and CHARMM36 force field were used; the double-deprotonated form of cardiolipin was used (TLCL2). Production simulation was performed with MD integrator (2-fs step, bonds to hydrogen atoms were constrained), Nose-Hoover thermostat (303K, 1-ps time constant) and Parinello-Rahman semi-isotropic barostat (5-ps time constant, water compressibility). PME was used for electrostatics; cut-off radii were set to 1.2 nm. VDW switch radius was set to 1.0 nm. Resulting trajectories deposited: <strong>COMBINED-50ps.trr</strong> [500 ns length, 50-ps step, with velocities] <strong>COMBINED-10ps-100ns.trr</strong> [last 100 ns, 10-ps step, with velocities] <strong>COMBINED.edr</strong> [500 ns length, 2-ps step] The additional ZIP archive contains intermediate TPR and MDP files and a force field folder.
description: The study was supported in 2019-2021 partly by the Russian Foundation for Basic Research (No. 19-04-00242 to Yu. A. Ermakov) and by the Ministry of Science and Higher Education of Russia (theme #AAAA-A20-120101090002-4). Simulations were performed on SMP machines at the Biophysics Department of the School of Biology, MSU.
DOI: 10.5281/zenodo.8387250
title: laminaria_ephemera_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24213022
title: Complications after proton radiotherapy in children, focusing on severe late complications. A complete Swedish cohort 2008–2019

description: Proton radiotherapy (RT) is an attractive tool to deliver local therapy with minimal dose to uninvolved tissue, however, not suitable for all patients. The aim was to explore complications, especially severe late complications (grades 3–4), following proton RT delivered to a complete Swedish cohort of paediatric patients aged &lt;18 years treated 2008–2019. Data was downloaded from a national registry. Complications with a possible causation with RT are reported. Proton treatments until July 2015 was performed with a fixed horizontal 172 MeV beam (The Svedberg Laboratory (TSL), Uppsala) in a sitting position and thereafter with gantry-based pencil-beam scanning technique (Skandion Clinic, Uppsala) in a supine position. 219 courses of proton RT (77 at TSL and 142 at Skandion) were delivered to 212 patients (mean age 9.2 years) with various tumour types (CNS tumours 58%, sarcomas 26%, germ cell tumours 7%). Twenty-five patients had severe acute complications (skin, mucous membrane, pharynx/oesophagus, larynx, upper gastrointestinal canal, lower gastrointestinal canal, eyes, ears). Fifteen patients had severe late complications; with increased proportion over time: 4% at 1-year follow-up (FU), 5% at 3-year, 11% at 5-year. Organs affected were skin (1 patient), subcutaneous tissue (4), salivary glands (1), upper GI (1), bone (7), joints (2), CNS (2), PNS (1), eyes (1) and ears (5). Twenty-one of the 28 patients with 10-year FU had at least one late complication grades 1–4 and fourteen of them had more than one (2–5 each). The most important result of our study is the relatively low proportion of severe late complications, comparable with other proton studies on various tumours. Furthermore, the numbers of late complications are lower than our own data set on a mixed population of photon and proton treated paediatric patients, assuring the safety of using proton therapy also in the clinical practice.