cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8063216.v1
title: The association between PTSD and cardiovascular disease and its risk factors in male veterans of the Iraq/Afghanistan conflicts: a systematic review

description: Military personnel with Post-Traumatic Stress Disorder (PTSD) can experience high levels of mental and physical health comorbidity, potentially indicating a high level of functional impairment that can impact on both military readiness and later ill-health. There is strong evidence to implicate PTSD as a contributory factor to Cardiovascular Disease (CVD) among serving personnel and veterans. This systematic review focusses on the association between PTSD and cardiovascular disease/risk factors in male, military serving and ex-serving personnel who served in the Iraq/Afghanistan conflicts. PUBMED, MEDLINE, PILOTS, EMBASE, PSYCINFO, and PSYCARTICLES were searched using PRISMA guidelines. Three hundred and forty-three records were identified, of which 20 articles were selected. PTSD was positively associated with the development of CVD, specifically circulatory diseases, including hypertension. PTSD was also positively associated with the following risk factors: elevated heart rate, tobacco use, dyslipidaemia, and obesity. Conflicting data is presented regarding heart rate variability and inflammatory markers. Future studies would benefit from a standardized methodological approach to investigating PTSD and physical health manifestations. It is suggested that clinicians offer health advice for CVD at an earlier age for ex-/serving personnel with PTSD.
DOI: 10.6084/m9.figshare.8063129
title: A new nothosaur (Sauropterygia) from the Ladinian of Vellberg-Eschenau, southern Germany

description: A new species of <i>Nothosaurus</i> from the Lower Keuper (Lettenkeuper, Ladinian, Erfurt Formation) of Vellberg-Eschenau, southern Germany, is described on the basis of a nearly complete skull that is only missing the lower jaw. Together with <i>Nothosaurus edingerae</i>, it is the only valid <i>Nothosaurus</i> species exclusively known from the Lower Keuper (Ladinian) of the Germanic Basin. <i>Nothosaurus cristatus</i>, sp. nov., differs from all other nothosaurs by exhibiting a postorbital that is excluded from the orbital margin by the postfrontal, the maxilla, and the jugal. The postfrontal and the maxilla form the posterior orbital margin exclusively. The parietal forms a pronounced and sharp crest anterior to the parietal foramen, which is unique among <i>Nothosaurus</i>. The ectopterygoid bears a long posterior process. A phylogenetic analysis of <i>Nothosaurus cristatus</i>, based on Liu et al. (2014, Scientific Reports 4:7142, doi: 10.1038/srep07142) with modified characters after Lin et al. (2017, Journal of Vertebrate Paleontology, doi: 10.1080/02724634.2017.1278703), yielded a nearly unchanged topology that supported the monophyly of (<i>N</i>. <i>jagisteus</i> (<i>N. cristatus</i> (<i>N. mirabilis</i> + <i>N. tchernovi</i>))).
DOI: 10.6084/m9.figshare.8063186.v1
title: Document corpus of court case judgments

description: The data set contains Indian Supreme Court judgments. These cases are extracted using a web crawler from the website www.judis.nic.in. Preliminary pre-processing of removal of header/ metadata information from the document is performed.
DOI: 10.6084/m9.figshare.8063108
title: 7bgzf case study dataset for ARM machine

description: 7bgzf case study datasets for the ARM machine<br>The included files are datasets from the UCSC Genome Browser and Ensembl, which have been prepared as test corpuses for deflation. .bcf files have been converted from vcf.gz files using the `bcftools view -Ob` with bcftools 1.9. Direct links to the original datasets are below.<br>http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/wgEncodeUwRepliSeqBg02esG1bAlnRep1.bam<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/homo_sapiens/homo_sapiens_structural_variations.vcf.gz<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/mus_musculus/mus_musculus_structural_variations.vcf.gz<br>References:[1] Haesussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, et al. The UCSC Genome Browser database: 2019 Update. Nucleic Acids Research. 2019.[2] Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucleic Acids Research. 2018.<br>
DOI: 10.6084/m9.figshare.8063117
title: 7bgzf case study dataset for x64 machine

description: 7bgzf case study datasets for the x64 machine<br>The included files are datasets from the UCSC Genome Browser, the 1000 Genomes Project, and Ensembl, which have been prepared as test corpuses for deflation. .bcf files have been converted from vcf.gz files using the `bcftools view -Ob` with bcftools 1.9. Direct links to the original datasets are below.<br>http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2.bam<br>http://hgdownload.cse.ucsc.edu/goldenPath/mm9/encodeDCC/wgEncodeUwRnaSeq/wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6AlnRep1.bam<br>http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/ALL.chr22.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/mus_musculus/mus_musculus.vcf.gz<br>References:[1] Haesussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, et al. The UCSC Genome Browser database: 2019 Update. Nucleic Acids Research. 2019.[2] 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature. 2015.[3] Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucleic Acids Research. 2018.
DOI: 10.6084/m9.figshare.8063117.v1
title: 7bgzf case study dataset for x64 machine

description: 7bgzf case study datasets for the x64 machine<br>The included files are datasets from the UCSC Genome Browser, the 1000 Genomes Project, and Ensembl, which have been prepared as test corpuses for deflation. .bcf files have been converted from vcf.gz files using the `bcftools view -Ob` with bcftools 1.9. Direct links to the original datasets are below.<br>http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2.bam<br>http://hgdownload.cse.ucsc.edu/goldenPath/mm9/encodeDCC/wgEncodeUwRnaSeq/wgEncodeUwRnaSeqThymusCellPolyaMAdult8wksC57bl6AlnRep1.bam<br>http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/ALL.chr22.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/mus_musculus/mus_musculus.vcf.gz<br>References:[1] Haesussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, et al. The UCSC Genome Browser database: 2019 Update. Nucleic Acids Research. 2019.[2] 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature. 2015.[3] Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucleic Acids Research. 2018.
DOI: 10.6084/m9.figshare.8063129.v1
title: A new nothosaur (Sauropterygia) from the Ladinian of Vellberg-Eschenau, southern Germany

description: A new species of <i>Nothosaurus</i> from the Lower Keuper (Lettenkeuper, Ladinian, Erfurt Formation) of Vellberg-Eschenau, southern Germany, is described on the basis of a nearly complete skull that is only missing the lower jaw. Together with <i>Nothosaurus edingerae</i>, it is the only valid <i>Nothosaurus</i> species exclusively known from the Lower Keuper (Ladinian) of the Germanic Basin. <i>Nothosaurus cristatus</i>, sp. nov., differs from all other nothosaurs by exhibiting a postorbital that is excluded from the orbital margin by the postfrontal, the maxilla, and the jugal. The postfrontal and the maxilla form the posterior orbital margin exclusively. The parietal forms a pronounced and sharp crest anterior to the parietal foramen, which is unique among <i>Nothosaurus</i>. The ectopterygoid bears a long posterior process. A phylogenetic analysis of <i>Nothosaurus cristatus</i>, based on Liu et al. (2014, Scientific Reports 4:7142, doi: 10.1038/srep07142) with modified characters after Lin et al. (2017, Journal of Vertebrate Paleontology, doi: 10.1080/02724634.2017.1278703), yielded a nearly unchanged topology that supported the monophyly of (<i>N</i>. <i>jagisteus</i> (<i>N. cristatus</i> (<i>N. mirabilis</i> + <i>N. tchernovi</i>))).
DOI: 10.6084/m9.figshare.8063150.v1
title: A data set of distributed global population and water withdrawal from 1960 to 2017

description: global population and water withdrawal
DOI: 10.6084/m9.figshare.8063108.v1
title: 7bgzf case study dataset for ARM machine

description: 7bgzf case study datasets for the ARM machine<br>The included files are datasets from the UCSC Genome Browser and Ensembl, which have been prepared as test corpuses for deflation. .bcf files have been converted from vcf.gz files using the `bcftools view -Ob` with bcftools 1.9. Direct links to the original datasets are below.<br>http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/wgEncodeUwRepliSeqBg02esG1bAlnRep1.bam<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/homo_sapiens/homo_sapiens_structural_variations.vcf.gz<br>http://ftp.ensembl.org/pub/release-93/variation/vcf/mus_musculus/mus_musculus_structural_variations.vcf.gz<br>References:[1] Haesussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, et al. The UCSC Genome Browser database: 2019 Update. Nucleic Acids Research. 2019.[2] Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, et al. Ensembl 2018. Nucleic Acids Research. 2018.<br>
DOI: 10.6084/m9.figshare.8063156.v1
title: MAMEM SCI questionnaire study results.xlsx

description: MAMEM SCI questionnaire study results
DOI: 10.6084/m9.figshare.8063150.v2
title: A data set of distributed global population and water withdrawal from 1960 to 2017

description: global population and water withdrawal
DOI: 10.6084/m9.figshare.8063156.v3
title: MAMEM SCI questionnaire study results.xlsx

description: MAMEM SCI questionnaire study results
DOI: 10.6084/m9.figshare.8063156.v2
title: MAMEM SCI questionnaire study results.xlsx

description: MAMEM SCI questionnaire study results
DOI: 10.6084/m9.figshare.8062805
title: MOESM2 of A circulating miRNA signature for early diagnosis of acute kidney injury following acute myocardial infarction

description: Additional file 2: Tables S1, S2. Literature review of 119 research articles related to AKI, AMI and cardiovascular diseases. Supplementary references. Supplementary references of Additional file 1: TableÂ S3.
DOI: 10.6084/m9.figshare.8062805.v1
title: MOESM2 of A circulating miRNA signature for early diagnosis of acute kidney injury following acute myocardial infarction

description: Additional file 2: Tables S1, S2. Literature review of 119 research articles related to AKI, AMI and cardiovascular diseases. Supplementary references. Supplementary references of Additional file 1: TableÂ S3.
DOI: 10.6084/m9.figshare.8062778
title: MOESM2 of Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)

description: Additional file 2. Â Performance of CUPP prediction for each CAZyÂ family.
DOI: 10.6084/m9.figshare.8062778.v1
title: MOESM2 of Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)

description: Additional file 2. Â Performance of CUPP prediction for each CAZyÂ family.
DOI: 10.6084/m9.figshare.8062739
title: Additional file 2: of Validation of the Toronto hepatocellular carcinoma risk index for patients with cirrhosis in China: a retrospective cohort study

description: Categories of etiology in three risk groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8062736
title: Additional file 1: of Validation of the Toronto hepatocellular carcinoma risk index for patients with cirrhosis in China: a retrospective cohort study

description: Characteristics of 76 patients with HCC. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8062736.v1
title: Additional file 1: of Validation of the Toronto hepatocellular carcinoma risk index for patients with cirrhosis in China: a retrospective cohort study

description: Characteristics of 76 patients with HCC. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8062739.v1
title: Additional file 2: of Validation of the Toronto hepatocellular carcinoma risk index for patients with cirrhosis in China: a retrospective cohort study

description: Categories of etiology in three risk groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8062664
title: Additional file 2: of Effect of drought stress on the genetic architecture of photosynthate allocation and remobilization in pods of common bean (Phaseolus vulgaris L.), a key species for food security

description: Table S2. Digenic epistatic interactions in each environment (year, irrigation treatment). C: well-watered control; ID: intermittent drought; TD: terminal drought. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8062655
title: Additional file 1: of Effect of drought stress on the genetic architecture of photosynthate allocation and remobilization in pods of common bean (Phaseolus vulgaris L.), a key species for food security

description: Table S1. QTLs identified for various phenotypic traits in different years and under different water availability treatments. C: well-watered control; ID: intermittent drought; TD: terminal drought. PVE: proportion of variation explained by QTL. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.8062664.v1
title: Additional file 2: of Effect of drought stress on the genetic architecture of photosynthate allocation and remobilization in pods of common bean (Phaseolus vulgaris L.), a key species for food security

description: Table S2. Digenic epistatic interactions in each environment (year, irrigation treatment). C: well-watered control; ID: intermittent drought; TD: terminal drought. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8062655.v1
title: Additional file 1: of Effect of drought stress on the genetic architecture of photosynthate allocation and remobilization in pods of common bean (Phaseolus vulgaris L.), a key species for food security

description: Table S1. QTLs identified for various phenotypic traits in different years and under different water availability treatments. C: well-watered control; ID: intermittent drought; TD: terminal drought. PVE: proportion of variation explained by QTL. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.8062613
title: Additional file 2: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

description: CRISPR models. Excel table containing statistically significant predictive models found using the CRISPR screen. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8062607
title: Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

description: RNAi models. Excel table containing statistically significant predictive models found using the RNAi screen data. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8062613.v1
title: Additional file 2: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

description: CRISPR models. Excel table containing statistically significant predictive models found using the CRISPR screen. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8062607.v1
title: Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

description: RNAi models. Excel table containing statistically significant predictive models found using the RNAi screen data. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8062586
title: Additional file 1: of Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit

description: Table S1. Primer sequences for microsatellite analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8062586.v1
title: Additional file 1: of Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit

description: Table S1. Primer sequences for microsatellite analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8062568
title: Additional file 3: of Disruption of the pleiotropic gene scoC causes transcriptomic and phenotypical changes in Bacillus pumilus BA06

description: Table S1. The relative expression levels and the fold-change of all the genes in scoC mutant (BA06-â scoC) and the wt (BA06) strains of B. pumilus across three time points. (XLSX 2020 kb)
DOI: 10.6084/m9.figshare.8062568.v1
title: Additional file 3: of Disruption of the pleiotropic gene scoC causes transcriptomic and phenotypical changes in Bacillus pumilus BA06

description: Table S1. The relative expression levels and the fold-change of all the genes in scoC mutant (BA06-â scoC) and the wt (BA06) strains of B. pumilus across three time points. (XLSX 2020 kb)
DOI: 10.6084/m9.figshare.8062469
title: Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

description: Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Table S2. Pairewise FST comparison between rice varietal types and regions among the 307 unique accessions. Table S3. Pairewise FST comparison between regions considering only the indica accessions among the 307 unique accessions. Table S4. Pairewise FST comparison between regions considering only the japonica accessions among the 307 unique accessions. Table S5. Descriptive statistics of colour parameters and geometric-related traits. Table S6. Data: Intensity by Colour. Table S7. Passport information on the 696 Philippine traditional pigmented rice accession collected. Table S8. Accessions from neigbouring countries used in this study. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.8062469.v1
title: Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

description: Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Table S2. Pairewise FST comparison between rice varietal types and regions among the 307 unique accessions. Table S3. Pairewise FST comparison between regions considering only the indica accessions among the 307 unique accessions. Table S4. Pairewise FST comparison between regions considering only the japonica accessions among the 307 unique accessions. Table S5. Descriptive statistics of colour parameters and geometric-related traits. Table S6. Data: Intensity by Colour. Table S7. Passport information on the 696 Philippine traditional pigmented rice accession collected. Table S8. Accessions from neigbouring countries used in this study. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.8062391
title: MOESM5 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

description: Additional file 5. FASTA sequences. FASTA format, 16S amplicon sequence file of the top 100 most abundant ASV sequences, with names in the FASTA headers corresponding to the names referenced in the article text and figures (e.g. ASV76 corresponds to Methanobacterium as discussed in the text and as indicated in the figures).
DOI: 10.6084/m9.figshare.8062388
title: Additional file 4: of A modular transcriptome map of mature B cell lymphomas

description: Lists of genes for each of the spot modules. (XLSX 256 kb)
DOI: 10.6084/m9.figshare.8062388.v1
title: Additional file 4: of A modular transcriptome map of mature B cell lymphomas

description: Lists of genes for each of the spot modules. (XLSX 256 kb)
DOI: 10.6084/m9.figshare.8062391.v1
title: MOESM5 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

description: Additional file 5. FASTA sequences. FASTA format, 16S amplicon sequence file of the top 100 most abundant ASV sequences, with names in the FASTA headers corresponding to the names referenced in the article text and figures (e.g. ASV76 corresponds to Methanobacterium as discussed in the text and as indicated in the figures).
DOI: 10.6084/m9.figshare.8062376
title: MOESM3 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

description: Additional file 3. Bioprocess data. Excel format spreadsheet of bioprocess data and factors corresponding to the microbial samples analysed. Columns are variables and factors, and rows are samples. Units are indicated in the column headers.
DOI: 10.6084/m9.figshare.8062376.v1
title: MOESM3 of Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading

description: Additional file 3. Bioprocess data. Excel format spreadsheet of bioprocess data and factors corresponding to the microbial samples analysed. Columns are variables and factors, and rows are samples. Units are indicated in the column headers.
DOI: 10.6084/m9.figshare.8062367
title: Additional file 2: of A modular transcriptome map of mature B cell lymphomas

description: Table of samples, providing histopathological and molecular subtypes. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8062367.v1
title: Additional file 2: of A modular transcriptome map of mature B cell lymphomas

description: Table of samples, providing histopathological and molecular subtypes. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8061956
title: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation

description: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation
DOI: 10.6084/m9.figshare.8061959
title: Mycobacterium bovis BCG Danish delta-sapM genome annotation

description: Mycobacterium bovis BCG Danish delta-sapM genome annotation
DOI: 10.6084/m9.figshare.8061914
title: ANTs_files_for_mni_icbm152_nlin_sym_09a

description: ANTs processing files for use with the MNI ICBM152 symmetric template
DOI: 10.6084/m9.figshare.8061956.v1
title: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation

description: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation
DOI: 10.6084/m9.figshare.8061905
title: Mycobacterium bovis BCG Danish delta-sapM genome sequence

description: Mycobacterium bovis BCG Danish delta-sapM genome sequence
DOI: 10.6084/m9.figshare.8061854
title: Mycobacterium bovis BCG Danish 1331 (07/270) genome sequence

description: M. bovis BCG Danish 1331 (07/270) genome sequence
DOI: 10.6084/m9.figshare.8061854.v1
title: BCG Danish 1331 (07/270) genome sequence

description: M. bovis BCG Danish 1331 (07/270) genome sequence
DOI: 10.6084/m9.figshare.8061815
title: Base de dados climáticos da estação meteorológica de São João de Petrópolis (série histórica 1977-2017), Santa Teresa, região central do Espírito Santo (planilhas .CSV)

description: Base de dados climáticos brutos da estação meteorológica de São João de Petrópolis (série histórica 1977-2017), Santa Teresa, região central do Espírito Santo. Os dados foram utilizados em Saiter et al. 2019 (Rodriguésia) para elaboração de diagrama climático e modelo de balanço hídrico sequencial. Dados organizados em planilhas por cada ano da série histórica (formato .CSV).