cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/xvb3-2672
title: Seasonal influence on detection probabilities for multiple aquatic invasive species using environmental DNA

description: Aquatic invasive species (AIS) are a threat to freshwater ecosystems. Documenting AIS prevalence is critical to effective management and early detection. However, conventional monitoring for AIS is time and resource intensive and is rarely applied at the resolution and scale required for effective management. Monitoring using environmental DNA (eDNA) of AIS has the potential to enable surveillance at a fraction of the cost of conventional methods, but key questions remain related to how eDNA detection probability varies among environments, seasons, and multiple species with different life histories. To quantify spatiotemporal variation in the detection probability of AIS using eDNA sampling, we surveyed 20 lakes with known populations of four aquatic invasive species: Common Carp (Cyprinus carpio), Rusty Crayfish (Faxonius rusticus), Spiny Waterflea (Bythotrephes longimanus), and Zebra Mussels (Dreissena polymorpha). We collected water samples at 10 locations per lake, five times throughout the open water season. Quantitative PCR was used with species-specific assays to determine the presence of species DNA in water samples. Using Bayesian occupancy models, we quantified the effects of lake and site characteristics and sampling season on eDNA detection probability. The probability of detection varied seasonally, and the seasonal variation was species-specific and related to species life histories. Zebra Mussels were the most detectable of our species, and detection probability peaked in midsummer when only five water samples were required to achieve a 95% probability of detection. Spiny Water flea detection also peaked in mid to late summer, but were overall the most difficult to detect. Common Carp were most detectable in the spring and Rusty Crayfish were most detectable in early fall, corresponding to key life history events. Our results provide critical information for decision makers interested in using eDNA as a multispecies monitoring tool and highlight the importance of sampling when species are in DNA releasing life history stages.
description: The files contain data and code to analyze detection probability of four common Aquatic Invasive species using Environmental DNA in Minnesota. The analysis, model and results come from the R markdown file model_code.rmd. This file reads in platewise_4species.csv in the "data" folder and outputs a file named modelW4species.gof.rds in the "models" folder. Additionally this markdown document outputs figures in the "figures" folder. The model is run using the R package jagsUI and data manipulation is done with the R package dplyr from the tidyverse.
DOI: 10.6084/m9.figshare.22598230
title: CHORISO - chemical reaction SMILES from academic journals

description: CHORISO (<b>CH</b>emical <b>O</b>rganic <b>R</b>eact<b>I</b>on <b>S</b>MILES <b>O</b>mnibus) is a curated dataset containing chemical reactions SMILES extracted from high-impact factor journals. It is built using the CJHIF dataset, and the resulting data is used to propose a new holistic evaluation of reaction prediction models (see paper). A detailed explanation of the processing steps and proposed metrics is included in this repo<i>.</i>The following files are included:choriso_public.tar.gz: compressed file containing the ChORISO dataset, 2'224'239 canonical reaction SMILES.uspto_public.tar.gz: file containing the USPTO dataset cleaned and processed following the same pipeline than CHORISO.splits.tar.gz: compressed folder containing the training, validation and test files used to train and evaluate models in the study.<br>
DOI: 10.25345/c5cz32g4r
title: MassIVE MSV000093674 - Cooperation Between PRMT1 and PRMT6 Drives Lung Cancer Health Disparities Among Black/African American Men
title: SUMMARY Non-Hispanic Black/African American (Black/AA) men in the United States have disproportionally higher incidence and mortality rates of lung cancer compared to non-Hispanic White (NHW) men. Biological factors are believed to play critical roles in driving the disparities. Nevertheless, large-scale genomic studies fail to identify significant somatic differences in lung cancer driver genes contributing to the disparities. Elevated expression of protein arginine methyltransferases (PRMTs) correlating with poorer prognosis is observed in many cancer types. Here, we observed a higher PRMT6 expression in lung cancer of Black/AA men compared to NHW men. PRMT6 formed a heteromer complex with PRMT1 to catalyze arginine methylation of interleukin enhancer-binding factor 2 essential for cell proliferation. Disrupting PRMT1/PRMT6 heteromer complex by a competitive peptide reduced cell proliferation in non-small cell lung cancer cell lines and lung cancer patient-derived organoids. This work implicates that PRMT1/PRMT6 heteromer complex contributes to poorer lung cancer outcomes in Black/AA men vs. NHW men that could serve as a target to eliminate cancer health disparities.
DOI: 10.6084/m9.figshare.21909734
title: Geomorphology of the Liera catchment (Dolomites, NE Italy): understanding landscape response to an extreme event

description: Geomorphological field surveys and mapping have been carried out in a catchment of the Dolomites (eastern Italian Alps) as part of a research project aiming at the assessment of sediment availability for mass wasting in mountain environments. The study area is the Liera catchment which was severely affected by a high-intensity, regional-scale storm named ‘Vaia’ (27–30 October 2018), which induced relevant morphological changes, caused a major flood in the main stream and triggered debris flows in many tributaries. This contribution gives a snapshot of the present-day state of the study area to improve the understanding of such a landscape by characterizing the processes that control its geomorphological spatio-temporal dynamics and evolution.
DOI: 10.6084/m9.figshare.21909734.v1
title: Geomorphology of the Liera catchment (Dolomites, NE Italy): understanding landscape response to an extreme event

description: Geomorphological field surveys and mapping have been carried out in a catchment of the Dolomites (eastern Italian Alps) as part of a research project aiming at the assessment of sediment availability for mass wasting in mountain environments. The study area is the Liera catchment which was severely affected by a high-intensity, regional-scale storm named ‘Vaia’ (27–30 October 2018), which induced relevant morphological changes, caused a major flood in the main stream and triggered debris flows in many tributaries. This contribution gives a snapshot of the present-day state of the study area to improve the understanding of such a landscape by characterizing the processes that control its geomorphological spatio-temporal dynamics and evolution.
DOI: 10.6084/m9.figshare.21707307
title: Metallogeny of the state of Oaxaca, Mexico

description: The state of Oaxaca in southern Mexico includes copious metallic deposits of distinct types that were formed in several tectonothermal events since the Proterozoic. This work integrates a large database of mineral occurrences and deposits in Oaxaca. The 1:850,000 scale metallogenetic map depicts the location of deposits, mining regions, and mining districts on a lithological base, along with a summarized metallogenic history of the state and the distribution of the tectonostratigraphic terranes. We briefly describe the most relevant features of each mineralized area and the characteristics of the metallogenic epochs of Oaxaca. All the geolocation information was organized in GIS format.
DOI: 10.6084/m9.figshare.22265864
title: Reconstructing anthropic coastal landscape of Campi Flegrei volcanic area (Southern Italy) during the Roman period from multi-technique surveys

description: Campi Flegrei is one of the widest and most dangerous active volcanic complexes in the Mediterranean basin, known to be affected by continuous and sudden vertical ground movements (bradyseismic crisis) that have characterized the post-calderic volcanic activity since the Late Pleistocene and particularly during the Roman period. Despite the intense volcano-tectonic processes, the area has been densely inhabited since the Greek-Roman as testified by several submerged archaeological remains here used as high-precision relative sea-level markers. By using a complex multi-technique approach made of direct, indirect morpho-acoustic and optical surveys, and stratigraphic analysis, we present a detailed reconstruction of the coastal landscape of Campi Flegrei and its surroundings between the Roman Late Republican and Early Imperial ages. The coastal scenario aims to facilitate the comprehension of how volcano-tectonic events influenced the evolution of this singular coastal landscape, and how these interfered with human activity in terms of damages and adaptation.
DOI: 10.6084/m9.figshare.22265864.v1
title: Reconstructing anthropic coastal landscape of Campi Flegrei volcanic area (Southern Italy) during the Roman period from multi-technique surveys

description: Campi Flegrei is one of the widest and most dangerous active volcanic complexes in the Mediterranean basin, known to be affected by continuous and sudden vertical ground movements (bradyseismic crisis) that have characterized the post-calderic volcanic activity since the Late Pleistocene and particularly during the Roman period. Despite the intense volcano-tectonic processes, the area has been densely inhabited since the Greek-Roman as testified by several submerged archaeological remains here used as high-precision relative sea-level markers. By using a complex multi-technique approach made of direct, indirect morpho-acoustic and optical surveys, and stratigraphic analysis, we present a detailed reconstruction of the coastal landscape of Campi Flegrei and its surroundings between the Roman Late Republican and Early Imperial ages. The coastal scenario aims to facilitate the comprehension of how volcano-tectonic events influenced the evolution of this singular coastal landscape, and how these interfered with human activity in terms of damages and adaptation.
DOI: 10.6084/m9.figshare.21707307.v1
title: Metallogeny of the state of Oaxaca, Mexico

description: The state of Oaxaca in southern Mexico includes copious metallic deposits of distinct types that were formed in several tectonothermal events since the Proterozoic. This work integrates a large database of mineral occurrences and deposits in Oaxaca. The 1:850,000 scale metallogenetic map depicts the location of deposits, mining regions, and mining districts on a lithological base, along with a summarized metallogenic history of the state and the distribution of the tectonostratigraphic terranes. We briefly describe the most relevant features of each mineralized area and the characteristics of the metallogenic epochs of Oaxaca. All the geolocation information was organized in GIS format.
DOI: 10.6084/m9.figshare.22791129
title: Global environmental systems – multivariate anthropoecological classification

description: Changes to the Earth's environment, increasing anthropogenic pressure, and the global decline of biodiversity bring the need to establish spatial frameworks for the monitoring and assessment of such dynamic processes. Several environmental stratifications have been developed at the global level; however, most of them only include natural conditions in the classification process. Incorporating spatial patterns of biodiversity and the degree of anthropogenic pressure seems to be essential in an era of significant environmental transformation. We developed a new comprehensive classification of Global Environmental Systems based on general abiotic gradients, distribution of biodiversity, and spatial differentiation of human impact. This classification is based on 22 variables covering abiotic, biotic, and anthropogenic factors. We identified 10 abiotic, biotic, and anthropogenic classes using cluster analysis; their combination results in 169 unique Global Environmental Systems (GES) showing human-environment interactions. Each class shows an area with similar abiotic and biotic background and human pressure..
DOI: 10.6084/m9.figshare.22791129.v1
title: Global environmental systems – multivariate anthropoecological classification

description: Changes to the Earth's environment, increasing anthropogenic pressure, and the global decline of biodiversity bring the need to establish spatial frameworks for the monitoring and assessment of such dynamic processes. Several environmental stratifications have been developed at the global level; however, most of them only include natural conditions in the classification process. Incorporating spatial patterns of biodiversity and the degree of anthropogenic pressure seems to be essential in an era of significant environmental transformation. We developed a new comprehensive classification of Global Environmental Systems based on general abiotic gradients, distribution of biodiversity, and spatial differentiation of human impact. This classification is based on 22 variables covering abiotic, biotic, and anthropogenic factors. We identified 10 abiotic, biotic, and anthropogenic classes using cluster analysis; their combination results in 169 unique Global Environmental Systems (GES) showing human-environment interactions. Each class shows an area with similar abiotic and biotic background and human pressure..
DOI: 10.6084/m9.figshare.23853203
title: A malaria risk model for the Mediterranean in antiquity based on the historical <i>Carta della Malaria dell’Italia</i>

description: Growing interest in the health burden of malaria in ancient times is complimented by recent DNA confirmation of its presence at several archaeological sites in the Mediterranean. This study presents a model of ancient malaria risk for the region with utility for synthesis and application. The GIS-based model combines malaria risk factors that can be reasonably known for pre-modern times. Calibration, verification, and validation of the model is possible through use of a detailed map of pre-eradication malaria endemicity in Italy, the 1882 Carta della Malaria dell’Italia. The model provides a cross-disciplinary tool by bringing technical GIS capabilities to the evaluation of textual sources having potential malarial connections. The study’s main product is an open access relative malaria risk layer for GIS use and application to historical reconstruction. Example maps using model output and potential use are presented.
DOI: 10.6084/m9.figshare.23853203.v2
title: A malaria risk model for the Mediterranean in antiquity based on the historical <i>Carta della Malaria dell’Italia</i>

description: Growing interest in the health burden of malaria in ancient times is complimented by recent DNA confirmation of its presence at several archaeological sites in the Mediterranean. This study presents a model of ancient malaria risk for the region with utility for synthesis and application. The GIS-based model combines malaria risk factors that can be reasonably known for pre-modern times. Calibration, verification, and validation of the model is possible through use of a detailed map of pre-eradication malaria endemicity in Italy, the 1882 Carta della Malaria dell’Italia. The model provides a cross-disciplinary tool by bringing technical GIS capabilities to the evaluation of textual sources having potential malarial connections. The study’s main product is an open access relative malaria risk layer for GIS use and application to historical reconstruction. Example maps using model output and potential use are presented.
DOI: 10.6084/m9.figshare.20518650
title: Geology of the Derain quadrangle (H10), Mercury

description: We present the results of geological mapping of Mercury’s Derain (H10) quadrangle (0°-72°E and 22.5°N-22.5°S) using data from the MESSENGER spacecraft. The map is presented on a scale of 1:3,000,000, for which linework was drawn at 1:300,000. We distinguish three major morphological plains units: Smooth, Intermediate, and Intercrater Plains. We produced two versions of the map, with craters classified according to a 3- and 5-class degradation system. This allows compatibility with other MESSENGER-era maps and Mariner 10-era maps. This map will help provide science context for the ESA-JAXA BepiColombo mission to Mercury.
DOI: 10.6084/m9.figshare.20518650.v2
title: Geology of the Derain quadrangle (H10), Mercury

description: We present the results of geological mapping of Mercury’s Derain (H10) quadrangle (0°-72°E and 22.5°N-22.5°S) using data from the MESSENGER spacecraft. The map is presented on a scale of 1:3,000,000, for which linework was drawn at 1:300,000. We distinguish three major morphological plains units: Smooth, Intermediate, and Intercrater Plains. We produced two versions of the map, with craters classified according to a 3- and 5-class degradation system. This allows compatibility with other MESSENGER-era maps and Mariner 10-era maps. This map will help provide science context for the ESA-JAXA BepiColombo mission to Mercury.
DOI: 10.6084/m9.figshare.23853203.v1
title: A malaria risk model for the Mediterranean in antiquity based on the historical <i>Carta della Malaria dell’Italia</i>

description: Growing interest in the health burden of malaria in ancient times is complimented by recent DNA confirmation of its presence at several archaeological sites in the Mediterranean. This study presents a model of ancient malaria risk for the region with utility for synthesis and application. The GIS-based model combines malaria risk factors that can be reasonably known for pre-modern times. Calibration, verification, and validation of the model is possible through use of a detailed map of pre-eradication malaria endemicity in Italy, the 1882 Carta della Malaria dell’Italia. The model provides a cross-disciplinary tool by bringing technical GIS capabilities to the evaluation of textual sources having potential malarial connections. The study’s main product is an open access relative malaria risk layer for GIS use and application to historical reconstruction. Example maps using model output and potential use are presented.
DOI: 10.6084/m9.figshare.21435753
title: Landslides and predisposing factors of the Southern Apennines, Italy

description: The Fiumarella di Corleto drainage basin is an emblematic sector of the southern Apennine thrust belt in the Basilicata region (Southern Italy), which is strongly affected by landslides. Landslides both affect the urban area and the facilities related to hydrocarbon exploitation, such as the pipelines and oil wells connected with the oil centre located just outside the eastern border of the study area. Based on a detailed field survey, supported by stereoscopic analysis, a landslide inventory map has been realized, which also reports the associated processes and landforms. The relationships between the different types of landslides and the various predisposing factors like outcropping lithologies, slopes steepness, slope exposition and land use have been also investigated. The acquired data relate to a geologically complex area of the southern Apennines subject to recent uplift and represent a fundamental contribution useful for the correct management of the territory.
DOI: 10.6084/m9.figshare.21435753.v1
title: Landslides and predisposing factors of the Southern Apennines, Italy

description: The Fiumarella di Corleto drainage basin is an emblematic sector of the southern Apennine thrust belt in the Basilicata region (Southern Italy), which is strongly affected by landslides. Landslides both affect the urban area and the facilities related to hydrocarbon exploitation, such as the pipelines and oil wells connected with the oil centre located just outside the eastern border of the study area. Based on a detailed field survey, supported by stereoscopic analysis, a landslide inventory map has been realized, which also reports the associated processes and landforms. The relationships between the different types of landslides and the various predisposing factors like outcropping lithologies, slopes steepness, slope exposition and land use have been also investigated. The acquired data relate to a geologically complex area of the southern Apennines subject to recent uplift and represent a fundamental contribution useful for the correct management of the territory.
DOI: 10.6084/m9.figshare.20518650.v1
title: Geology of the Derain quadrangle (H10), Mercury

description: We present the results of geological mapping of Mercury’s Derain (H10) quadrangle (0°-72°E and 22.5°N-22.5°S) using data from the MESSENGER spacecraft. The map is presented on a scale of 1:3,000,000, for which linework was drawn at 1:300,000. We distinguish three major morphological plains units: Smooth, Intermediate, and Intercrater Plains. We produced two versions of the map, with craters classified according to a 3- and 5-class degradation system. This allows compatibility with other MESSENGER-era maps and Mariner 10-era maps. This map will help provide science context for the ESA-JAXA BepiColombo mission to Mercury.
DOI: 10.6084/m9.figshare.21685284
title: Quantifying and visualizing the 15-Minute walkable city concept across Europe: a multicriteria approach

description: The disruptions associated with health and energy crisis have emphasized the need for hyperlocal cities. However, in Europe, a tool to measure the efficiency of land use and accessibility planning for localizing urban mobility is missing. In this paper, we construct a comparable 15-Minute-Walking City (15-MWC) index that assesses the walking performance of 121 European metropolitan areas and seven amenity types. The data are combined equally following the PROMETHEE II multicriteria approach to assign a final score and to present a ranking of 15-Minutes cities. The main visualization demonstrates European-level disparities and indicates that most of leading cities are in Germany, while most of the worst performers are in the UK. We also reveal a statistically significant difference in 15-MWC performance due to their GDP per capita disparities. The empirical results may serve as a referencing tool for cross-city comparisons and may support policymakers when designing transport and city-planning strategies.
DOI: 10.6084/m9.figshare.21685284.v1
title: Quantifying and visualizing the 15-Minute walkable city concept across Europe: a multicriteria approach

description: The disruptions associated with health and energy crisis have emphasized the need for hyperlocal cities. However, in Europe, a tool to measure the efficiency of land use and accessibility planning for localizing urban mobility is missing. In this paper, we construct a comparable 15-Minute-Walking City (15-MWC) index that assesses the walking performance of 121 European metropolitan areas and seven amenity types. The data are combined equally following the PROMETHEE II multicriteria approach to assign a final score and to present a ranking of 15-Minutes cities. The main visualization demonstrates European-level disparities and indicates that most of leading cities are in Germany, while most of the worst performers are in the UK. We also reveal a statistically significant difference in 15-MWC performance due to their GDP per capita disparities. The empirical results may serve as a referencing tool for cross-city comparisons and may support policymakers when designing transport and city-planning strategies.