cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xck3xy
title: Occurrence Download

description: A dataset containing 3949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophioglossum lusitanicum L."
 ]
}

 The dataset includes 3949 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-150805223722583/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j82j5
title: Occurrence Download

description: A dataset containing 1825 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Construction and Reservoir Filling Phases - Iberian Wolf (Canis lupus) [Sign surveys] [2010-2014]"
 ]
}

 The dataset includes 1825 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224934-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqzcnp
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea gracilis Hook. ex Poepp."
 ]
}

 The dataset includes 22 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177071-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t3d2d
title: Occurrence Download

description: A dataset containing 3972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "DatasetKey is tan-database"
 ]
}

 The dataset includes 3972 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-150827100048397/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aye5vj
title: Occurrence Download

description: A dataset containing 3817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "DatasetKey is LACM Vertebrate Collection"
 ]
}

 The dataset includes 3817 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224952-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk8hp5
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Micoureus regina (Thomas, 1898)"
 ]
}

 The dataset includes 170 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177039-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abyt11
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium reflexum L.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3ucsw
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "TaxonKey is Leopardus Gray, 1842"
 ]
}

 The dataset includes 166 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177044-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l7wdu1
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metallura eupogon (Cabanis, 1874)"
 ]
}

 The dataset includes 314 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028348-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfuked
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neobuxbaumia squamulosa Scheinvar & Sánchez-Mej."
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uonbxj
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocnemis luciani sapphiropygia Taczanowski, 1874"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028354-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwhmd3
title: Occurrence Download

description: A dataset containing 101051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is United States of America",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 3000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 101051 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002036-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nncgac
title: Occurrence Download

description: A dataset containing 24420 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tursiops truncatus (Montagu, 1821)"
 ]
}

 The dataset includes 24420 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj94q3
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Odontophorus strophium (Gould, 1844)"
 ]
}

 The dataset includes 592 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002056-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc87u9
title: Occurrence Download

description: A dataset containing 1732 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loxodonta africana (Blumenbach, 1797)",
 "Year 2011-2021"
 ]
}

 The dataset includes 1732 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224953-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqzvk2
title: Occurrence Download

description: A dataset containing 11169 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Akita Prefectural Museum, Hiroki Watanabe Collection"
 ]
}

 The dataset includes 11169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aw5h4b
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerastium danguyi J.F.Macbr."
 ]
}

 The dataset includes 158 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057519-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76c7u3
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Delphinus capensis Gray, 1828"
 ]
}

 The dataset includes 618 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224957-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzspbe
title: Occurrence Download

description: A dataset containing 465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anacardium excelsum (Bertero & Balb.) Skeels",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 465 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-170822121629195/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj8rtz
title: Occurrence Download

description: A dataset containing 990073 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-93.75 16.8, -90.9 16.8, -90.9 19.15, -93.75 19.15, -93.75 16.8))"
 ]
}

 The dataset includes 990073 records from 788 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177051-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyqcpa
title: Occurrence Download

description: A dataset containing 3338150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 48.58410666666667, 35.924964333333335 65.67073733333334, 1.8796086666666671 65.67073733333334, 1.8796086666666671 48.58410666666667, 35.924964333333335 48.58410666666667))",
 "EventDate is 2020-06-01,2020-06-30"
 ]
}

 The dataset includes 3338150 records from 563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018024-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jb8nsc
title: Occurrence Download

description: A dataset containing 3817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-86 33,-78 33,-78 40,-86 40,-86 33))",
 "TaxonKey is Microstegium vimineum (Trin.) A.Camus"
 ]
}

 The dataset includes 3817 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030759-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ude8gh
title: Occurrence Download

description: A dataset containing 16352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-124.4789 27.09633,-67.33028 27.09633,-67.33028 50.4156,-124.4789 50.4156,-124.4789 27.09633))",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 16352 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023490-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrqzoh
title: Occurrence Download

description: A dataset containing 227781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calidris canutus (Linnaeus, 1758)"
 ]
}

 The dataset includes 227781 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007383-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vusyf
title: Occurrence Download

description: A dataset containing 1301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysocyon brachyurus (Illiger, 1815)"
 ]
}

 The dataset includes 1301 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018026-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4krxe
title: Occurrence Download

description: A dataset containing 36697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Euterpe oleracea Mart., Euterpe precatoria Mart., Euterpe petiolata Burret, Euterpe precatoria var. longevaginata (Mart.) A.J.Hend., Euterpe precatoria var. precatoria, Euterpe stenophylla Trail & Thurn, Euterpe stenophylla Trail ex Burret, Euterpe subruminata Burret)"
 ]
}

 The dataset includes 36697 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030755-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4fhp7
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanopus carbo Lowe, 1839"
 ]
}

 The dataset includes 339 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035697-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6altgx
title: Occurrence Download

description: A dataset containing 2088 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicksonia sellowiana (C.Presl) Hook."
 ]
}

 The dataset includes 2088 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000582-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftgb6x
title: Occurrence Download

description: A dataset containing 3783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antimora rostrata (Günther, 1878)"
 ]
}

 The dataset includes 3783 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035694-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ns5aur
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Branchiomma bairdi (McIntosh, 1885)"
 ]
}

 The dataset includes 377 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056278-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkwef9
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Murciélagos de las sabanas inundables de las cuencas de los ríos Bita, Manacacías y Cravo Sur - SULU II"
 ]
}

 The dataset includes 157 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046772-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzhjkj
title: Occurrence Download

description: A dataset containing 847 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus corrugata Hook."
 ]
}

 The dataset includes 847 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056275-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqwq6n
title: Occurrence Download

description: A dataset containing 6943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudo graeca Linnaeus, 1758"
 ]
}

 The dataset includes 6943 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049870-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymg3vn
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harrisia martinii",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 782 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025463-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbk6ue
title: Occurrence Download

description: A dataset containing 188687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lysimachia thyrsiflora"
 ]
}

 The dataset includes 188687 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025359-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12958928
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.5281/zenodo.17011296
title: Additional data for "Endemic but not eroded: Genomic distinctiveness and conservation genomics of the British swallowtail butterfly (Papilio machaon britannicus Seitz, 1907)"

description: This is the supplematary data for "Endemic but not eroded: Genomic distinctiveness and conservation genomics of the British swallowtail butterfly (Papilio machaon britannicus Seitz, 1907)"

Information in ReadMe.txt

 

Authors

Benoit Nabholz1,2*, Eliette L. Reboud1,3,, Bérénice J. Lafon1, Adam M. Cotton4, Martin G. Partridge5, N. Mark Collins5 & Fabien L. Condamine1*

Affiliations

1 Institut des Sciences de l’Evolution de Montpellier, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier, France

2 Institut Universitaire de France, Paris, France

3 Évolution, Génomes, Comportement et Écologie, Université Paris-Saclay, CNRS, IRD, 91190 Gif-sur-Yvette, France

4 86/2 Moo 5, Tambon Nong Kwai, Hang Dong, Chiang Mai, Thailand

5 Swallowtail and Birdwing Butterfly Trust, ℅ Stephenson Smart, Queens Head House, The Street, Acle, Norfolk, NR13 3DY, UK.

Authors for correspondence (*): Benoit Nabholz (benoit.nabholz@umontpellier.fr) and Fabien L. Condamine (fabien.condamine@gmail.com)

 

(In ReadMe.txt)#### Explanation of the content of files and folders

to uncompress archive use tar -xzvf command such as:tar -xzvf Scripts.tar.gz

### ScriptsScripts/ – Folder containing scripts    Script_britannicus.bash – Script to reproduce genomic analyses    britannicus_popGen.R – Script to reproduce figures and statistical analyses

### AssembliesPapilionini_Papilio_machaon_FC3013_pool_megahit_asm_purged.fasta.gz = megahit+purge_dups assembly of FC3013 individualsPapilionini_Papilio_machaon_FC3013_pool_megahit_purged_ragtag_GCF912999745_asm.fasta.gz = RAG-TAG guided assembly using GCF_912999745.1_ilPapMach1.1 assembly as guide

### Data    All_machaon_noindels_nosexchr.recode.vcf.gz – VCF with all individuals, without indels and sex chromosomes    All_machaon_Q200_noindels_goodSNP_nomissing_nosexchr.vcf.gz – VCF after filtering for high-quality SNPs

    Analyses/        GADMA/ – GADMA analysis folder        Geno/ – Geno files for PCA analyses        PnPs/ – Results of the Pn/Ps analyses        RoH/ – Results of the RoH analyses        Scan/ – Population genetics statistics        SNPEFF/ – Results of the SNPEFF SNP annotation        Treemix/ – Treemix analysis folder

    Fasta/ – Whole-genome alignments split into 100 kb windows    FastaCDS/ – CDS alignments    Heterozygosity/ – Results of the heterozygosity analysis    ncbi_dataset/ – Papilio machaon annotations downloaded from NCBI and used in SNPEFF    Papilio_machaon_hardmasked.fasta – Repeat-masked reference genome    quantile.cov.txt – File with coverage quantiles