cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26616478.v1
title: Additional file 1 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 1: Figure S1. Forest plot and Funnel plot.
DOI: 10.6084/m9.figshare.26616490.v1
title: Additional file 5 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 5: Supplementary S5. MR-PRESSO test of Exposures (vitamin D and 25-hydroxyvitamin D.
DOI: 10.6084/m9.figshare.26616499.v1
title: Additional file 8 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 8.
DOI: 10.6084/m9.figshare.26616502.v1
title: Additional file 9 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 9.
DOI: 10.6084/m9.figshare.26616484.v1
title: Additional file 3 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 3: Figure S3. Forest plot and Funnel plot.
DOI: 10.6084/m9.figshare.26705964
title: Additional file 1 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 1: The clinical characteristics of the IPF patients in GSE27957.
DOI: 10.6084/m9.figshare.26705964.v1
title: Additional file 1 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 1: The clinical characteristics of the IPF patients in GSE27957.
DOI: 10.6084/m9.figshare.26705967
title: Additional file 2 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 2: The clinical characteristics of the IPF patients in GSE28042.
DOI: 10.6084/m9.figshare.26705967.v1
title: Additional file 2 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 2: The clinical characteristics of the IPF patients in GSE28042.
DOI: 10.6084/m9.figshare.26705970
title: Additional file 3 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 3: Differentially expressed genes (DEGs) between Idiopathic Pulmonary Fibrosis (IPF) and Control groups.
DOI: 10.6084/m9.figshare.26705970.v1
title: Additional file 3 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 3: Differentially expressed genes (DEGs) between Idiopathic Pulmonary Fibrosis (IPF) and Control groups.
DOI: 10.6084/m9.figshare.26705973
title: Additional file 4 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 4: The 307 Gene Ontology (GO) Biological Process (BP) terms, 14 GO Cellular Components (CC) terms, and 12 GO Molecular Function (MF) terms were enriched for 26 signature genes.
DOI: 10.6084/m9.figshare.26705973.v1
title: Additional file 4 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 4: The 307 Gene Ontology (GO) Biological Process (BP) terms, 14 GO Cellular Components (CC) terms, and 12 GO Molecular Function (MF) terms were enriched for 26 signature genes.
DOI: 10.6084/m9.figshare.26705976
title: Additional file 5 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 5: The 50 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were enriched for 26 signature genes.
DOI: 10.6084/m9.figshare.26705976.v1
title: Additional file 5 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 5: The 50 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were enriched for 26 signature genes.
DOI: 10.6084/m9.figshare.26705979
title: Additional file 6 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 6: The 41 Gene Set Enrichment Analysis (GSEA) pathways in the GSE28042 dataset.
DOI: 10.6084/m9.figshare.26705979.v1
title: Additional file 6 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 6: The 41 Gene Set Enrichment Analysis (GSEA) pathways in the GSE28042 dataset.
DOI: 10.6084/m9.figshare.26705982
title: Additional file 7 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 7: The 30 classical pathways of the column plot of the 30 classical pathways in the GSE28042 dataset.
DOI: 10.6084/m9.figshare.26705982.v1
title: Additional file 7 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 7: The 30 classical pathways of the column plot of the 30 classical pathways in the GSE28042 dataset.
DOI: 10.6084/m9.figshare.26705985
title: Additional file 8 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 8: The 268 pairs of regulatory relationships in the competing endogenous RNAs (ceRNA) regulatory network.
DOI: 10.6084/m9.figshare.26705985.v1
title: Additional file 8 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 8: The 268 pairs of regulatory relationships in the competing endogenous RNAs (ceRNA) regulatory network.
DOI: 10.6084/m9.figshare.26705988
title: Additional file 9 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 9: The 52 pairs relationships in the predictive network of prognostic genes and drugs.
DOI: 10.6084/m9.figshare.26705988.v1
title: Additional file 9 of A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes

description: Supplementary Material 9: The 52 pairs relationships in the predictive network of prognostic genes and drugs.
DOI: 10.15468/dl.pjgtkq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.960147 -32.912716, 148.960147 -32.919454, 148.971376 -32.919454, 148.971376 -32.917208, 148.966884 -32.917208, 148.966884 -32.912716, 148.960147 -32.912716)), ((148.971376 -32.919454, 148.971376 -32.923945, 148.975868 -32.923945, 148.975868 -32.921699, 148.980359 -32.921699, 148.980359 -32.917208, 148.975868 -32.917208, 148.975868 -32.914962, 148.973622 -32.914962, 148.973622 -32.919454, 148.971376 -32.919454)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067904-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26616499
title: Additional file 8 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 8.
DOI: 10.6084/m9.figshare.26616469.v1
title: Additional file 7 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 7: Table S4. Pathways commonly up- or down-regulated in the RiboTag technique and CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26616448.v1
title: Additional file 2 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 2: Table S1. Pathway enrichment analysis for the Pdgf-RiboTag technique
DOI: 10.6084/m9.figshare.26616451
title: Additional file 3 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 3: Table S2. Pathway enrichment analysis for the CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26616469
title: Additional file 7 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 7: Table S4. Pathways commonly up- or down-regulated in the RiboTag technique and CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26616484
title: Additional file 3 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 3: Figure S3. Forest plot and Funnel plot.
DOI: 10.6084/m9.figshare.26616502
title: Additional file 9 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 9.
DOI: 10.6084/m9.figshare.26616451.v1
title: Additional file 3 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 3: Table S2. Pathway enrichment analysis for the CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26616466.v1
title: Additional file 6 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 6: Table S3. Gene sets differentially expressed in ischemic endothelium commonly found in the RiboTag technique and the CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26706021
title: Additional file 11 of Nicotine restores olfactory function by activation of prok2R/Akt/FoxO3a axis in Parkinson’s disease

description: Additional file 11: Table S1. DEGs screened using a log2FC value of 1.0 and an FDR value of &lt; 0.05. Table S2. DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S3. Significantly downregulated DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S4. Significantly upregulated DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S5. DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group. Table S6. Significantly downregulated DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group. Table S7. Significantly upregulated DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group.
DOI: 10.6084/m9.figshare.26706021.v1
title: Additional file 11 of Nicotine restores olfactory function by activation of prok2R/Akt/FoxO3a axis in Parkinson’s disease

description: Additional file 11: Table S1. DEGs screened using a log2FC value of 1.0 and an FDR value of &lt; 0.05. Table S2. DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S3. Significantly downregulated DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S4. Significantly upregulated DEGs of the MPTP + Vehicle group versus the Vehicle group. Table S5. DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group. Table S6. Significantly downregulated DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group. Table S7. Significantly upregulated DEGs of the MPTP + Nic_T group versus the MPTP + Vehicle group.
DOI: 10.6084/m9.figshare.26616466
title: Additional file 6 of Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke

description: Additional file 6: Table S3. Gene sets differentially expressed in ischemic endothelium commonly found in the RiboTag technique and the CD31+ cell sorting technique.
DOI: 10.6084/m9.figshare.26616493
title: Additional file 6 of Causal associations of 25-hydroxyvitamin D with functional gastrointestinal disorders: a two-sample Mendelian randomization study

description: Additional file 6.
DOI: 10.6084/m9.figshare.26616589
title: Additional file 1 of Chromosome-level Dinobdella ferox genome provided a molecular model for its specific parasitism

description: Additional file 1: Figure S1. Molecular phylogenetic analysis of leech species by maximum likelihood method based on COI genes. The label with the red dot corresponds to the target leech species in this study. Figure S2. P4HB-mediated protein and protein interaction network. Data come from the STRING database
DOI: 10.6084/m9.figshare.26616625.v1
title: Additional file 1 of Characterisation of the Paenarthrobacter nicotinovorans ATCC 49919 genome and identification of several strains harbouring a highly syntenic nic-genes cluster

description: Additional file1: Supplementary Table 1. MIGS mandatory information for the complete genome of Paenarthrobacter nicotinovorans ATCC 49919. Supplementary Table 2. Genomes of strains belonging to the Paenarthrobacter, Arthrobacter, Nocardioides and Rhodococcus genera evaluated in the study. The table lists all the Paenarthrobacter strains available in NCBI Genomes database as well as Arthrobacter, Nocardioides and Rhodococcus strains known to have the nic-genes. Supplementary Table 3. Annotations of the nic-genes cluster on the two pAO1 plasmid sequences. Bold indicates genes experimentally related to nicotine degradation. Supplementary Table 4. MEGA BLAST results of different plasmids and contigs against the pAO1 megaplasmid of P. nicotinovorans ATCC 49919.
DOI: 10.15468/dl.gu3rq8
title: Occurrence Download

description: A dataset containing 55054 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Reptiles and Amphibians Dataset"
 ]
}

 The dataset includes 55054 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022254-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mafy7g
title: Occurrence Download

description: A dataset containing 685921 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caltha L."
 ]
}

 The dataset includes 685921 records from 1955 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022237-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0190427.10fu
title: SH0190427.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190428.10fu
title: SH0190428.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190429.10fu
title: SH0190429.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190430.10fu
title: SH0190430.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190431.10fu
title: SH0190431.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190432.10fu
title: SH0190432.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190433.10fu
title: SH0190433.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190434.10fu
title: SH0190434.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.