cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23585115
title: Supplementary Material for: Three-dimensional Ultrasound Evaluation of Lung Volume in Fetuses with Abdominal Wall Defect

description: Introduction: Abdominal wall defects (AWD) interfere with postnatal respiratory parameters. We aimed to evaluate lung volume (LV) in fetuses with AWD using three-dimensional (3D) ultrasound (US) and to correlate AWD with the type (omphalocele and gastroschisis) and size of the defect and neonatal morbidity and mortality. Methods: This prospective study included 72 pregnant women with fetuses with AWD and a gestational age &lt;25 weeks. Abdominal volume, 3D US LV, and herniated volume were acquired every 4 weeks up to 33 weeks. LV was compared with normal reference curves and correlated with abdominal and herniated volumes. Results: Omphalocele (p&lt;0.001) and gastroschisis (p&lt;0.001) fetuses had smaller LV than did normal fetuses. LV was positively correlated with abdominal volume (omphalocele, r=0.86; gastroschisis, r=0.88), whereas LV was negatively correlated with omphalocele-herniated volume/abdominal volume (p&lt;0.001, r= -0.51). LV was smaller in omphalocele fetuses that died (p=0.002), were intubated (p=0.02), or had secondary closure (p&lt;0.001). In gastroschisis, a smaller LV was observed in fetuses discharged using oxygen (p=0.002). Discussion/Conclusion: Fetuses with AWD had smaller 3D LV than normal fetuses. Fetal abdominal volume was inversely correlated with LV. In omphalocele fetuses, a smaller LV was associated with neonatal mortality and morbidity.
DOI: 10.6084/m9.figshare.24278590
title: Supplementary Material for: Risk factors for neurodevelopmental impairment at two- and five years corrected age in preterm infants with established bronchopulmonary dysplasia

description: Introduction: The objective of this study was to identify risk factors for neurodevelopmental impairment (NDI) at two- and five-years corrected age (CA) in a cohort of preterm infants with established bronchopulmonary dysplasia (BPD). Methods: This single center retrospective cohort study included infants born between 2009 and 2016 at a gestational age &lt; 30 weeks with moderate or severe BPD at 36 weeks’ postmenstrual age. Perinatal characteristics, (social) demographics, and comorbidities were collected from the electronic patient records. Odds ratios for NDI were calculated with univariate and multivariate logistic regression analyses adjusting for potential confounders. Results: Of the 602 eligible infants, 123 infants were diagnosed with BPD. NDI was present in 30.3%, and 56.1% at two- and five-years CA, respectively. The only independent risk factors associated with NDI in the multivariate analyses were birthweight (adjusted odds ratio (aOR) 0.74, 95%CI 0.57-0.95; aOR 0.70, 95%CI 0.54-0.91, respectively), small for gestational age (SGA) (aOR 3.25, 95%CI 1.09-9.61; aOR 5.44, 95%CI 1.62-18.2, respectively) at both time points, and male gender at five-years CA (OR 2.49, 95%CI 1.11-5.57). Discussion/Conclusion: Birthweight and SGA are independent risk factors for NDI at two- and five-years CA and male gender at five-years CA in preterm infants with BPD. In contrast, well known other risk factors for NDI in the general population of preterm infants, such as GA, maternal education, and neonatal comorbidities were not independently associated with NDI.
DOI: 10.17632/4jmwvb7yt6.2
title: Unwillingness of Vaccine for PWD

description: The dataset contains an Extended Dataset for the study titled "Predictors of unwillingness or inaccessibility to receive the COVID-19 Vaccination among Persons with Disabilities in Bangladesh " 
Extended dataset 1: STROBE Checklist 
Extended dataset 2: Questionnaire in English
DOI: 10.5281/zenodo.7052205
title: Dataset for "Synchronous multi-segmental activity between metachronal waves controls locomotion speed in Drosophila larvae"

description: Dataset for publication "Synchronous multi-segmental activity between metachronal waves controls locomotion speed in Drosophila larvae".
DOI: 10.6084/m9.figshare.20489235.v2
title: PRISMA 2020 Checklist - Ardhi Arsala Rahmani

description: PRISMA Checklist
DOI: 10.6084/m9.figshare.21542397
title: Supplementary Material for: Effect of Bilastine on Chronic Urticaria: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Allergic diseases are a public health problem with the largest number of patients and the widest age distribution. Chronic urticaria (CU) is a common clinical allergic disease. Bilastine is effective in the treatment of CU, especially skin wind masses and erythema. The purpose of this study was to systematically evaluate the efficacy and safety of Bilastine in the treatment of CU symptoms and to provide an evidence-based reference for clinical rational drug use. <b><i>Methods:</i></b> PubMed, Scopus, the Cochrane Library, Embase, EBSCO, and other databases were searched by computer to collect the trials on the effect of bilastine on patients with CU. The retrieval time limit was established until November 2021. Two researchers independently screened the literature, extracted data, and evaluated the risk of bias in the included study. Meta-analysis was performed using RevMan5.4 software. <b><i>Results:</i></b> A total of 7 studies were included, including 975 patients. Meta-analysis results showed that compared to the control group, bilastine significantly improved the skin quality of life index, Total Symptom Score (TSS), and weekly urticaria activity score. The skin quality of life index DLQI score (MD = −4.98, 95% CI: −8.09 to −1.86, <i>p</i> = 0.002), skin symptom score TSS (MD = −1.62, 95% CI −2.29 to −0.94, <i>p</i> &lt; 0.00001), the number of hives in a week UAS-7 score (MD = −25.28, 95% CI −32.36 to −18.19, <i>p</i> &lt; 0.00001), and the differences were statistically significant. <b><i>Conclusions:</i></b> Bilastine has a better therapeutic effect on CU and can also significantly improve the clinical symptoms and quality of life of CU.
DOI: 10.6084/m9.figshare.21981095
title: Supplementary Material for: Effect of youthful blood environment and its key factor SCF on renal interstitial fibrosis in elderly mice

description: Introduction: Youthful blood environment was shown to decelerate the aging process of kidney and to attenuate senile renal fibrosis in a young-old parabiotic animal model; in addition, we identified a stem cell factor (SCF) that is closely linked with the process. This research was to investigate the effect of youthful blood environment on senile renal interstitial fibrosis and the role of SCF. Methods: We bred SCF receptor c-Kit gene loss-of-function Wps/Wps mice and established a combination mice model that was subjected to unilateral ureteral obstructive (UUO) and parabiotic surgeries. Parabiotic mice were divided into isochronic parabiotic (young-young, Y-IP and old-old, O-IP) and heterochronic parabiotic (young-old, HP) groups. UUO surgery was performed in one of the parabiotic pairs in the IP group (Y-IPuuo and O-IPuuo) and in the elderly mice in the HP group (O-HPuuo). In order to study the role of SCF/c-kit on renal interstitial fibrosis, UUO surgery was performed in wildtype (WT) and Wps/Wps mice. Results: Fourteen days after UUO surgery, the kidney interstitial fibrosis area, kidney function, and the expressions of SCF/c-Kit, pNF-κB, and fibrosis-related proteins in the O-HPuuo group were significantly lower than those in the Ouuo and O-IPuuo groups. Compared with wildtype UUO mice, the expressions of pNF-κB and fibrosis-related proteins, and the kidney function were all significantly decreased in Wps/Wps UUO mice. Conclusion: Youthful blood environment downregulated the expressions of SCF/c-Kit in elderly UUO mice, and ameliorated UUO-induced kidney fibrosis and function loss.
DOI: 10.6084/m9.figshare.22039778
title: Supplementary Material for: An Eye Tracking Investigation of Young People’s Gaze Behaviour to Gambling and Non-Gambling Moving Adverts

description: <b><i>Introduction:</i></b> Data from several areas of public health (e.g., harmful alcohol and tobacco) are consistent with the assertion that children’s exposure to advertising strategies increases intention to consume such products. Most studies have measured self-rated impact of gambling advertising using questionnaires. Given that gambling advertisements come in different forms such as print media/television advertising and contain variable content, it is difficult to understand using subjective measures which aspects of the gambling advertisements increase craving and desire to trigger a gambling session. In the present study, we applied a novel data-driven methodology that directly tracks eye movements to reveal attentional biases towards gambling adverts and promotions by examining differences in young people’s eye gaze behaviour when watching gambling and non-gambling (control) moving adverts. <b><i>Method:</i></b> A total of 98 (16–18 years old) children who self-identify as having a low or high craving to gambling watched gambling and non-gambling (control) television adverts, while their eye movements were recorded. <b><i>Results:</i></b> The results show that the data-driven method can isolate video clips that best distinguish people on the low-high craving spectrum, reveal the type of each video clip with the largest group differences, and accurately predict young people’s gambling craving on the basis of eye movement patterns. <b><i>Conclusion:</i></b> Our findings demonstrate that young people’s craving for gambling can be predicted based on their eye movements to video clips of gambling advertisements and that certain features of gambling advertisements may be more appealing to some group of viewers, particularly those with high craving for gambling.
DOI: 10.6084/m9.figshare.23309681
title: Supplementary Material for: Novel Phenylethanoid Glycosides Improve Hippocampal Synaptic Plasticity via the cAMP-CREB-BDNF Pathway in APP/PS1 Transgenic Mice

description: Introduction: Alzheimer’s disease (AD) is a major public health concern worldwide, but there are still no drugs available that treat it effectively. Previous studies have shown that phenylethanoid glycosides (PhGs) have pharmacological effects, which include anti-AD properties, but the underlying mechanisms by which they ameliorate AD symptoms remain unknown. Methods: In this study, we used an APP/PS1 AD mouse model to explore the function of and mechanisms underlying Savatiside A (SA) and Torenoside B (TB) in the treatment of AD. SA or TB (100 mg•kg-1•d-1) was orally administered to seven-month old APP/PS1 mice for four weeks. Cognitive and memory functions were measured using behavioral experiments (including the Morris water maze test and the Y-maze spontaneous alternation test). Molecular biology experiments (including Western blotting, immunoﬂuorescence, and Enzyme-linked immunosorbent assays) were used to detect any corresponding changes in signaling pathways. Results: The results showed that SA or TB treatment could significantly reduce cognitive impairment in APP/PS1 mice. We also showed that chronic treatment with SA/TB could prevent spine loss, synaptophysin immunoreactivity, and neuronal loss in mice, thereby improving synaptic plasticity and moderating learning and memory deficits. SA/TB administration also promoted the expression of synaptic proteins in APP/PS1 mouse brains and upregulated phosphorylation of proteins in the cAMP/CREB/BDNF pathway that are responsible for synaptic plasticity. Additionally, chronic SA/TB treatment increased the levels of brain-derived neurotrophic growth factor (BDNF) and nerve growth factor (NGF) in the brains of APP/PS1 mice. Both astrocyte and microglia volumes, as well as the generation of amyloid β, were also decreased in SA/TB-treated APP/PS1 mice compared to control APP/PS1 mice. Conclusion: In summary, SA/TB treatment was associated with activation of the cAMP/CREB/BDNF pathway and increased BDNF and NGF expression, indicating that SA/TB improves cognitive functioning via nerve regeneration. SA/TB is a promising candidate drug for the treatment of AD.
DOI: 10.6084/m9.figshare.24065100
title: Supplementary Material for: Eccentric Fixation and Good Visual Acuity in a Child with Large Traumatic Macular Hole: A Case Report

description: A girl of eight years old was referred to our clinic with a history of penetrating injury to her left eye six-year ago with light perception (LP) vision, and a large traumatic macular hole in her right eye. Her right eye's vision was 4/10 when she first visited our clinic. Considering the patient's one-eye status, her parents' reluctance to undergo surgery, and the possibility of spontaneous closure of traumatic macular holes, it was determined to observe the patient and evaluate her visual acuity and macular hole condition. In two years, the final BCVA (best corrected visual acuity) was 8/10 in the right eye, with infratemporal eccentric fixation in visuoscopy. In addition to evaluating and reporting this case as a traumatic macular hole, we will discuss the role of non-surgical treatment and the possibility of good visual acuity with eccentric fixation in a child with large traumatic macular hole.
DOI: 10.6096/4002
title: Sea2Cloud - Tangaroa - SSA - WIBS - Level 0

description: Sea spray was continuously generated with a plunging jet system, as described in detail in Sellegri et al. (2023) and previously used in Schwier et al. 2015 and 2017, Trueblood et al. 2021, Freney et al. 2021 and Sellegri et al. 2021. The 10 L tank was operated with a 10 cm seawater depth, so jet and film drops did not interact with the tank’s top locate 15 cm above the seawater level. Eight plunging jets were created by flushing seawater through 1 micrometer orifices that were equally spaced along a ¼” stainless steal tube, located at 5 cm below the tank’s top in the chamber diagonal. Jets penetrate the seawater volume at a depth of 7 cm, and therefore do not interact with the chamber bottom. The sea-spray generation system was operated at near constant jet flow rate, and reproduces sea-spray size distributions of similar shape to those reported for other plunging jet devices (Fuentes et al. 2010). The system was fed continuously with seawater sampled from a depth of ~6 m by the underway seawater supply. Once a day, the flow-through seawater system of the plunging jet system was switched from seawater directly coming from the ship underway seawater system to cooled seawater that had been stored in a 50 L temperature-controlled reservoir immediately before the temperature experiments start (filling time less than 5 min, Figure 1).  Temperature gradients between 2°C and 15°C were applied to the seawater over approximately 1 hour, with an initial decreasing temperature ramp, followed by an increasing temperature ramp. The experiments were stopped when the temperature-controlled reservoir had emptied. Temperature experiments were performed every morning around 11 am from 18/03/20 to 26/03/20, with an additional experiment in the afternoon of 26/03/20.

Supermicron particles generated by the SSA generator were taken through a short 1/2 inch antistatic smoothly curved line to a Waveband Inte- grated Bioaerosol Sensor (WIBS) for diameters ranging from 500 nm up to 4500 nm.
DOI: 10.6096/4003
title: Sea2Cloud - Tangaroa - SSA - SMPS - Level 0

description: Sea spray was continuously generated with a plunging jet system, as described in detail in Sellegri et al. (2023) and previously used in Schwier et al. 2015 and 2017, Trueblood et al. 2021, Freney et al. 2021 and Sellegri et al. 2021. The 10 L tank was operated with a 10 cm seawater depth, so jet and film drops did not interact with the tank’s top locate 15 cm above the seawater level. Eight plunging jets were created by flushing seawater through 1 micrometer orifices that were equally spaced along a ¼” stainless steal tube, located at 5 cm below the tank’s top in the chamber diagonal. Jets penetrate the seawater volume at a depth of 7 cm, and therefore do not interact with the chamber bottom. The sea-spray generation system was operated at near constant jet flow rate, and reproduces sea-spray size distributions of similar shape to those reported for other plunging jet devices (Fuentes et al. 2010). The system was fed continuously with seawater sampled from a depth of ~6 m by the underway seawater supply. Once a day, the flow-through seawater system of the plunging jet system was switched from seawater directly coming from the ship underway seawater system to cooled seawater that had been stored in a 50 L temperature-controlled reservoir immediately before the temperature experiments start (filling time less than 5 min, Figure 1).  Temperature gradients between 2°C and 15°C were applied to the seawater over approximately 1 hour, with an initial decreasing temperature ramp, followed by an increasing temperature ramp. The experiments were stopped when the temperature-controlled reservoir had emptied. Temperature experiments were performed every morning around 11 am from 18/03/20 to 26/03/20, with an additional experiment in the afternoon of 26/03/20.

Submicron particles generated by the SSA generator were taken through a ¼ inch stainless steel line to a 1-m long silica gel diffusion drier followed by an impactor with PM1 diameter cutoff. Particle size distributions were monitored by a differential mobility particle sizer system (DMPS) at 1 LPM, The DMPS system was preceded by a soft X-ray aerosol neutralizer (TSI Model 3088) and consisted of a TSI-type custom-built differential mobility analyzer (length 44 cm) operated at a sheath flow rate of 5.0 L/min for selecting particle sizee range of 10-500 nm across 26 size bins during a 13 min 40s scan and a TSI CPC model 3010. Relative humidity at the inlet was monitored, and kept below 35% at all times.
DOI: 10.7488/ds/3420
title: MAPseq FASTQ sequences and barcode count matrix Tsoi et al., 2022

description: Tsoi, Sau Yee, Merve Oncul, Ella Svahn, Mark Robertson, Zuzanna Bogdanowicz, Christina McClure, and Gulsen Surmeli. 2022. “Telencephalic Outputs from the Medial Entorhinal Cortex Are Copied Directly to the Hippocampus.” eLife 11 (February). https://doi.org/10.7554/eLife.73162.
DOI: 10.17632/ksdwxdwtxg.2
title: Recalibrating vision-for-action requires years after sight restoration from congenital blindness

description: We investigated whether early visual and visuomotor experience is essential for developing the ability to recalibrate the sensorimotor system. We tested young individuals who suffered from congenital visual deprivation due to bilateral cataracts before undergoing sight restoration surgery years later. We altered participants’ visuomotor mapping using prism goggles shifting their visual field laterally, and asked participants to perform a pointing task. We compared their recalibration performance to such distortion to that of two sighted controls: one matched to cataract-treated participants for age, the other matched also for visual acuity (i.e., tested with visual blur). 
The Excel files show, for each participant, the pointing error in each trial, expressed as a difference (in degrees of visual error) between target location and endpoint location (negative values = leftward error, positive = rightward error). For each participant, demographic data and a global measure of their ability to recalibrate to the visual distortion (recalibration index, irecal) are reported.
S1_main reports the data which contribute to the main text: the performance of the cataract-treated participants in their first test after surgery (all sample), as well as the performance of the subset of participants who took part also in the follow up and/or in the pre-surgical evaluations, and the performance of the two control groups of sighted participants (i.e., tested with/without visual blur).
S2_suppl_info reports the data relative to the development of the recalibration ability in the typical population, which are reported in the Supplementary Information.
DOI: 10.21227/hmsb-ka76
title: WUT-NGSIM: A High-precision and Trustworthy Vehicle Trajectory Dataset

description: The high-precision and long-distance extraction and construction of vehicle trajectory data and microscopic traffic flow characteristics are critical for traffic safety studies. Current research typically relies on a limited number of datasets which suffer from vehicle detection inaccuracy and limitation of the coverage area. Therefore, we establish a high-precision and long-distance vehicle trajectory dataset of urban scenarios. Primary features of the established dataset: (1) the trajectory data are extracted based on a trajectory extraction framework that contains the video stabilization, vehicle detection, vehicle tracking, data repair and smoothing. (2) The broken trajectory data caused by occlusion are connected through fusing tracking results at different frame rates based on the Kalman filter and Hungarian Algorithm. (2) Long-distance trajectory data from multi-videos are constructed based on video stitching, video fusion and trajectory fusion. This trajectory dataset can provide the high-precision and long-distance vehicle trajectory data for those data-driven studies in transportation.
DOI: 10.6084/m9.figshare.22362610
title: Supplementary Material for: Successful management of fungal keratitis by Alternaria alternata complicating Mooren’s ulcer

description: Mooren’s ulcer is an idiopathic peripheral ulcerative keratitis whose pathogenesis is thought to be due to an autoimmune reaction. Topical steroids are the first line treatment for Mooren’s ulcer and difficult to be discontinued. In this case, the 76-year-old patient receiving topical steroids for bilateral Mooren’s ulcer developed a feathery corneal infiltration and perforation in the left eye. On suspicion of a fungal keratitis complication, we started topical voriconazole treatment and performed lamellar keratoplasty. Topical betamethasone was continued twice a day. The identified causative fungus was Alternaria alternata, which is known to susceptible to voriconazole. MIC of voriconazole was later proven to be 0.5 μg/mL. After 3 months treatment, the residual feathery infiltration disappeared and the left vision recovered to 0.7. In this case, topical voriconazole was effective, and the eye was successfully treated with continuing topical steroids. Fungal species identification and antifungal susceptibility test proved helpful for symptom management.