cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23664320.v1
title: TableS1 from Increased initial task difficulty drives social foragers to develop sub-optimal conformity instead of adaptive diversity

description: The extent to which animal societies exhibit social conformity as opposed to behavioural diversity is commonly attributed to adaptive learning strategies. Less attention is given to the possibility that the relative difficulty of learning a task socially as opposed to individually can be critical for social learning dynamics. Here we show that by raising initial task difficulty, house sparrows previously shown to exhibit adaptive social diversity become predominantly conformists. The task we used required opening feeding well covers (easier to learn socially) and to choose the covers with the rewarding cues (easy to learn individually). We replicated a previous study where sparrows exhibited adaptive diversity, but did not pre-train the naive sparrows to open covers, making the task initially more difficult. In sharp contrast to the previous study results, most sparrows continued to conform to the demonstrated cue even after experiencing greater success with the alternative rewarding cue for which competition was less intense. Thus, our study shows that a task's cognitive demands, such as the initial dependency on social demonstration, can change the entire learning dynamics, causing social animals to exhibit sub-optimal social conformity rather than adaptive diversity under otherwise identical conditions.
DOI: 10.6084/m9.figshare.23622397
title: Electronic Supplementary Material from Increased initial task difficulty drives social foragers to develop sub-optimal conformity instead of adaptive diversity

description: This file contains all the figures, tables and captions.
DOI: 10.6084/m9.figshare.23622397.v2
title: Electronic Supplementary Material from Increased initial task difficulty drives social foragers to develop sub-optimal conformity instead of adaptive diversity

description: This file contains all the figures, tables and captions.
DOI: 10.6084/m9.figshare.23622397.v1
title: Excel data file from Increased initial task difficulty drives social foragers to develop sub-optimal conformity instead of adaptive diversity

description: Datasheets for each of the figures and relevant analysis.
DOI: 10.5281/zenodo.8141012
title: Stimulated Raman Photothermal Microscopy towards Ultrasensitive Chemical Imaging

description: Stimulated Raman scattering (SRS) microscopy has shown enormous potential in revealing<br> molecular structures, dynamics and couplings in complex systems. However, the sensitivity of SRS is<br> fundamentally limited to milli-molar level due to the shot noise and the small modulation depth. To<br> overcome this barrier, we revisit SRS from the perspective of energy deposition. The SRS process pumps<br> molecules to their vibrationally excited states. The thereafter relaxation heats up the surrounding and<br> induces refractive index changes. By probing the refractive index changes with a laser beam, we introduce<br> stimulated Raman photothermal (SRP) microscopy, where a &gt;500-fold boost of modulation depth is<br> achieved. Versatile applications of SRP microscopy on viral particles, cells, and tissues are demonstrated.<br> SRP microscopy opens a way to perform vibrational spectroscopic imaging with ultrahigh sensitivity. This dataset is the complete raw data used in the paper to support the findings.
DOI: 10.5281/zenodo.8141011
title: Stimulated Raman Photothermal Microscopy towards Ultrasensitive Chemical Imaging

description: Stimulated Raman scattering (SRS) microscopy has shown enormous potential in revealing<br> molecular structures, dynamics and couplings in complex systems. However, the sensitivity of SRS is<br> fundamentally limited to milli-molar level due to the shot noise and the small modulation depth. To<br> overcome this barrier, we revisit SRS from the perspective of energy deposition. The SRS process pumps<br> molecules to their vibrationally excited states. The thereafter relaxation heats up the surrounding and<br> induces refractive index changes. By probing the refractive index changes with a laser beam, we introduce<br> stimulated Raman photothermal (SRP) microscopy, where a &gt;500-fold boost of modulation depth is<br> achieved. Versatile applications of SRP microscopy on viral particles, cells, and tissues are demonstrated.<br> SRP microscopy opens a way to perform vibrational spectroscopic imaging with ultrahigh sensitivity. This dataset is the complete raw data used in the paper to support the findings.
DOI: 10.6084/m9.figshare.22951232.v1
title: <strong>Global forest fragmentation change from 2000 to 2020</strong>

description: This folder includes datasets and related codes for the Forest Fragmentation Index in 2000 and 2020.
DOI: 10.25345/c5057d33n
title: MassIVE MSV000092440 - Recruitment of BAG2 to DNAJ-PKAc scaffolds promotes cell survival and resistance to drug-induced apoptosis in fibrolamellar carcinoma
title: Raw MS datafiles and MaxQuant search result files for Lauer et. al. "Recruitment of BAG2 to DNAJ-PKAc scaffolds promotes cell survival and resistance to drug-induced apoptosis in fibrolamellar carcinoma"
DOI: 10.34740/kaggle/dsv/6132806
title: Single elder home monitoring: Gas and position
DOI: 10.15151/esrf-es-1117951310
title: Advanced Photon Source, Sector 21 - The Life Sciences Collaborative Access Team (LS-CAT) - CAT Member Macromolecular Crystallography

description: The Life Sciences Collaborative Access Team (LS-CAT) provides Macromolecular Crystallography support to our CAT members from eight Universities in the USA, including Northwestern University, University of Michigan, Wayne State University, Michigan State University, University Wisconsin, Vanderbilt University, and University of Illinois at Chicago, and also to General Users. With a one-year dark period approaching for the upgrade of the Advanced Photon Source (APS-U), we are seeking beam time for our CAT Member laboratories at ESRF by way of this Block Allocation Group, consisting of a portion of our CAT Member PIs and their laboratory members, in order to keep supporting their research and future funding. LS-CAT is organizing our CAT Members into this BAG Proposal, and other proposals we will submit, in order to streamline the process for our CAT Members, and for the Staff of Lightsources to which we are applying for access to beam time.
DOI: 10.15151/esrf-es-1118679356
title: The Israeli BAG

description: The Israeli BAG encompass most MX groups in Israel and is highly diverse and versatile in its scientific interests and convictions. In the last year some groups which are not regarded as genuine MX have been joining our BAG as users of the bioSAXS BM29 station adding to the diversity of the BAG. It is not straightforward to set descriptive summary that covers all the topics. A central theme in several BAG members could be regarded is molecular virology such as, the molecular basis for cell entry of viruses, from the Arenaviridae family of viruses, design of Vaccines against HVC by targeting HCV E2 envelope (Env) glycoprotein for neutralizing antibodies (nanobodies). The group of Rouvunski focuses on studying arthropod borne viruses (dengue, West Nile, Zika, Israel Turkey Meningoencephalitis) and recently coronaviruses (SARS-CoV-2, MERS, OC43) and their envelope proteins. On another approach we attempt to discover therapeutics against Chikungunya Virus by targeting the Clk1.
DOI: 10.15151/esrf-es-1118694982
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2398 proposal and can be grouped into different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study.
DOI: 10.15151/esrf-es-1119935261
title: Belgian BAG

description: The BAG includes groups situated at four Flemish universities: Antwerp, Brussels, Ghent and Leuven. Several of these groups are part of the elite Flemish Institute of Biotechnology (VIB). The proposed projects are highly diverse, including viral, prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Many projects deal with membrane proteins, cell surface receptors and protein-protein complexes. Central to the research in the BAG associated groups is the employment of integrative methods in structural biology combining X-ray crystallography, SAXS, and cryo-electron microscopy. Many crystals in the various proposed projects are small in size and radiation sensitive, requiring the use of the high brilliance MX beam lines, preferably with micro-focused X-rays. This is a continuation of a previous Belgian BAG which has resulted in numerous top-tier publications.
DOI: 10.15151/esrf-es-1120140741
title: Structural investigation of membrane and water-soluble proteins

description: The portfolio of this BAG includes structural investigation of membrane proteins as well as soluble proteins relevant to various scientific fields. These range from basic science to application-related projects with impact on biotechnology (optogenetics, biocatalysts) and medicine (understanding and combating bacterial and viral pathogens).
DOI: 10.15151/esrf-es-1295290279
title: Cryo-trapping intermediate states in the CarH photoreceptor

description: CarH is a vitamin B12-dependent photoreceptor protein that binds to operator DNA in a tetrameric complex to inhibit gene expression. The tetramer is stable in dark conditions, while exposure to light induces tetramer dissolution and dissociation from DNA, thus allowing gene expression. The suppressed gene controls the biosynthesis of carotenoids that protects bacteria from excess of sunlight (Jost et al., 2015). CarH’s dissociation mechanism has been studied by time-resolved transient absorption spectroscopy. Two photoreaction pathways have been proposed, providing insight into a number of intermediates formed during the dissociation process (Kutta et al., 2015 ; Miller et al., 2020). In both mechanisms the cobalt (Co) atom contained in the corrin of the B12 moiety plays the most important role by sensing light. Co’s redox photodynamics involves the transient formation of intermediate states that result in CarH tetramer dissociation.
DOI: 10.15151/esrf-es-1059319868
title: Towards TR-SSX at ID29

description: We aim to explore new opportunities at ESRF beamline ID29 to investigate the reaction dynamics of proteins. For this we will investigate the Stigmatella aurantiaca bacteriophytochrome 2 (SaBphP2) on time-scales from 10 μs to 10 s. Phytochromes are light regulated enzymes where both light perception and enzymatic activity reside on the same polypeptide chain. The light signal is transduced from a central chromophore through about 150 Å to the enzymatic domain. The long term goal is to observe signal transduction and enzyme regulation in real time by using time-resolved, synchrotron based, serial X-ray crystallography (TR-SSX).
DOI: 10.15151/esrf-es-1220324761
title: Redox reactions between FeCO3 and H2O in the deep mantle: Significance for the Earth's carbon-hydrogen-oxygen cycles

description: We propose that the water in deep Earth can provide an abundant source of H2 and O2, which may drive the self-redox reaction of FeCO3 to form appreciable hydrocarbons and O2-bearing phases in the mantle. The former may become the basic nutrient for the evolution of life when these hydrocarbons migrate to the shallow crust, and the latter will fix O2 in the deep Earth and contribute to the redox-inhomogeneous mantle. Our study aims to address a longstanding knowledge gap regarding the redox mechanism(s) in the Fe-C-H-O system up to 90 GPa, 2500 K. The results from this study are expected to quantify structures of CO4-bearing carbonates in the deep lower mantle and the nature of coupled Fe-C-H-O redox reactions. This is of major interest to the broader Earth Science community, including those studying the physicochemical properties of CO4 tetrahedra in carbonates, the genesis of deep hydrocarbons, and the cycling of volatiles and their impact on Earth’s climate and atmosphere.
DOI: 10.15151/esrf-es-1220329319
title: Searching for the 2D layered phases of carbon dioxide at multimegabar pressures

description: Despite the paramount importance of carbon dioxide as a simple system and also as a geophysical relevant material, the experimental investigations are limited so far only up to 120 GPa. Our research proposal is to study the phase diagram of carbon dioxide at extreme pressures. We would like to perform a detailed and extensive study of carbon dioxide between 100 and 300 GPa at room and at high temperatures by laser heating in order to investigate the stability field of carbon dioxide under geothermal conditions. In addition we propose to discover the transition from the 3D extended phase V (beta-cristobalite I-42d) to a new layered 2D phase with carbon still in 4 fold coordination (layer-AB P42/nmc or layer-AA P-4m2) which is expected to become stable above 200 GPa as obtained by several simulations studies.
DOI: 10.5281/zenodo.8146089
title: Longer is better - the functional benefit of long tails in limbless lizards: evidence from locomotion through contrasting substrates in a pygopodid legless lizard

description: Limbless vertebrates display a variety of morphologies, which are often linked to a species’ ecology and locomotion. Pygopodids, limbless gekkotans endemic to the Australo-Papuan region, exemplify a spectrum of ecomorphological variation in relative body-to-tail lengths. <em>D</em><em>elma molleri</em> inhabits grasslands and represents the short-bodied and long-tailed ecomorph. We predicted that its locomotor performance would be enhanced on grass substrates as opposed to structurally simpler substrates. To test this hypothesis, we assessed locomotion of <em>D. molleri </em>through three ecologically relevant substrates. Locomotor performance was significantly faster on the grass substrate over multiple distances. These data provide evidence of a functional performance benefit for limbless lizards with short bodies and long tails in grassy habitats, supports theories that such a morphology may have evolved to suit the occupation of these environments, and provide the first evidence of the functional benefit of long tails for locomotion through grass in a member of the Pygopodidae.
DOI: 10.5281/zenodo.8146088
title: Longer is better - the functional benefit of long tails in limbless lizards: evidence from locomotion through contrasting substrates in a pygopodid legless lizard

description: Limbless vertebrates display a variety of morphologies, which are often linked to a species’ ecology and locomotion. Pygopodids, limbless gekkotans endemic to the Australo-Papuan region, exemplify a spectrum of ecomorphological variation in relative body-to-tail lengths. <em>D</em><em>elma molleri</em> inhabits grasslands and represents the short-bodied and long-tailed ecomorph. We predicted that its locomotor performance would be enhanced on grass substrates as opposed to structurally simpler substrates. To test this hypothesis, we assessed locomotion of <em>D. molleri </em>through three ecologically relevant substrates. Locomotor performance was significantly faster on the grass substrate over multiple distances. These data provide evidence of a functional performance benefit for limbless lizards with short bodies and long tails in grassy habitats, supports theories that such a morphology may have evolved to suit the occupation of these environments, and provide the first evidence of the functional benefit of long tails for locomotion through grass in a member of the Pygopodidae.
DOI: 10.26179/nmc9-hq69
title: Accumulation Measurements, Law Dome 1959-1960
DOI: 10.6084/m9.figshare.23652825
title: Hypoxylon rickii annotated genome

description: Genome Data for Hypoxylon rickii
DOI: 10.18112/openneuro.ds003789.v2.0.0
title: Dynamic changes in neural representations underlie the repetition eﬀect on false memory
DOI: 10.6084/m9.figshare.23683644
title: Xylaria hypoxylon annotated genome

description: Genome data for xylaria hypoxylon
DOI: 10.48668/vt8ump/1elgza
title: sanderia.PacBio.fastq

description: :unav
DOI: 10.48668/vt8ump/3z9a5c
title: edible.PacBio.fastq.MD5

description: :unav
DOI: 10.48668/vt8ump/c7v1mk
title: sanderia.PacBio.fastq.gz.MD5

description: :unav
DOI: 10.48668/vt8ump/rk7s2t
title: edible.PacBio.fastq

description: :unav
DOI: 10.48668/vt8ump
title: Jellyfish genomes

description: Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing.
DOI: 10.6084/m9.figshare.23683664
title: Bowhead whale baleen (progesterone, estradiol, corticosterone, delta15N) from Prolonged baleen hormone cycles suggest atypical reproductive endocrinology of female bowhead whales

description: Serially measured hormones and nitrogen stable isotopes in baleen plates from 10 female bowhead whales.
DOI: 10.6084/m9.figshare.23683664.v1
title: Bowhead whale baleen (progesterone, estradiol, corticosterone, delta15N) from Prolonged baleen hormone cycles suggest atypical reproductive endocrinology of female bowhead whales

description: Serially measured hormones and nitrogen stable isotopes in baleen plates from 10 female bowhead whales.
DOI: 10.6084/m9.figshare.20039429
title: Database of Practice design with different levels of variability

description: Dataset with the performance and variability variables of a throwing task before and after a practice design with different levels of variability applied.
DOI: 10.6084/m9.figshare.20039429.v1
title: Database of Practice design with different levels of variability

description: Dataset with the performance and variability variables of a throwing task before and after a practice design with different levels of variability applied.
DOI: 10.6084/m9.figshare.23683671
title: Database of Practice design with different levels of variability

description: Dataset with the performance and variability variables of a throwing task before and after a practice design with different levels of variability applied.
DOI: 10.6084/m9.figshare.23683671.v1
title: Database of Practice design with different levels of variability

description: Dataset with the performance and variability variables of a throwing task before and after a practice design with different levels of variability applied.
DOI: 10.4121/7c37ae88-0215-4803-8403-57e48088ff0f.v2
title: Software and data used in the paper: Stratospheric small-scale disturbance characteristic in China based on round-trip intelligent sounding system

description: The procedures and the data files needed to recreate the figures in the paper. It includes the detection data of the round-trip intelligent sounding system (RTISS) and the process files for drawing.
DOI: 10.18452/21394
title: Perspectiva de los Investigadores sobre la Publicación de Datos de Investigación: Entrevistas Semiestructuradas de Perú

description: Diese transkribierten und anonymisierten Leitfanden-Interviews sind Teil des Projekts "Research Integrity and Privacy" des HEADT Centres, eines Forschungsprojektes über den vermuteten Konflikt zwischen der Veröffentlichung von Forschungsdaten und den Fragen des Datenschutzes. Die Leitfaden-Interviews wurden mit Forschenden aus Learning Analytics, Medizin und Klimafolgenforschung in Peru durchgeführt.
description: These transcribed and anonymised semi-structured interview data are part of the project “Research Integrity and Privacy” of the HEADT Centre, a research project on the presumed conflict between publishing of research data and the issues of data protection. The interviews were conducted with researchers from learning analytics, medicine and climate impact research in Peru.
DOI: 10.57967/hf/0895
title: autotrain-data-demoqa2
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20001210.50.3
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2000-12-10. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20010626.50.1
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2001-06-26. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20010919.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20010919.50.2
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2001-09-19. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20020327.50.3
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2002-03-27. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20020327.50.4
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2002-03-27. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20020822.40.2
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitbdxlsr03_20020822.50.1
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2002-08-22. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.