cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/wdcc/cops_nebt_imk_met
title: cops_nebt_imk_met: meteorological data from COPS energy balance and turbulence network run by FZK/IMK-TRO during COPS 2007

description: Project: Convective and Orographically-induced Precipitation Study - Weather forecast models have not been successful in improving the Quantitative Precipitation Forecast during the last 16 years. One reason for this stagnation is the lack of comprehensive, high-quality data sets usable for model validation as well as for data assimilation, thus leading to improved initial fields in numerical models. Theoretical analyses have identified the requirements measured data have to meet in order to close the gaps in process understanding. In field campaigns, it has been shown that the newest generation of remote sensing systems has the potential to yield data sets of the required quality. It is therefore time to combine the most powerful remote sensing instruments with proven ground-based and airborne measurement techniques in an Intensive Observations Period (IOP). Its goal is to serve as a backbone for the Priority Program SPP 1167 by producing the demanded data sets of unachieved accuracy and resolution. This requires a sophisticated scientific preparation and a careful coordination between the efforts of the institutions involved. For the first time, the pre-convective environment, the formation of clouds and the onset and development of precipitation as well as its intensity will be observed in four dimensions simultaneously in a region of sufficient size. This shall be achieved by combining the IOP with international programs and by collaboration between leading scientists in Europe, US, and other countries. Thus, the IOP, which we call Convective and Orographically-induced Precipitation Study (COPS), is a unique opportunity for an international field campaign featuring the newest generation of measurement systems such as scanning radar and lidar and leading to outstanding advances in atmospheric sciences. Please be aware of the common COPS/GOP/D-PHASE data policy, which you please find at http://cops.wdc-climate.de/ Summary: Several meteorological parameteres were measured at different stations run by FZK/IMK-TRO. Depending on the individual site i.e. wind direction, wind speed, global radiation, reflected irradiance, atmospheric longwave radiation, terrestric longwave radiation, surface temperature, precipitation, air pressure, soil heat flux, relative humidity. The respective set of parameters is described in the meta data of each station.
DOI: 10.1594/wdcc/cops_rsdu_imkfixrs
title: cops_rsdu_imkfixrs: meteorological profile data from fixed radiosounding stations run by FZK/IMK-TRO during COPS 2007

description: Project: Convective and Orographically-induced Precipitation Study - Weather forecast models have not been successful in improving the Quantitative Precipitation Forecast during the last 16 years. One reason for this stagnation is the lack of comprehensive, high-quality data sets usable for model validation as well as for data assimilation, thus leading to improved initial fields in numerical models. Theoretical analyses have identified the requirements measured data have to meet in order to close the gaps in process understanding. In field campaigns, it has been shown that the newest generation of remote sensing systems has the potential to yield data sets of the required quality. It is therefore time to combine the most powerful remote sensing instruments with proven ground-based and airborne measurement techniques in an Intensive Observations Period (IOP). Its goal is to serve as a backbone for the Priority Program SPP 1167 by producing the demanded data sets of unachieved accuracy and resolution. This requires a sophisticated scientific preparation and a careful coordination between the efforts of the institutions involved. For the first time, the pre-convective environment, the formation of clouds and the onset and development of precipitation as well as its intensity will be observed in four dimensions simultaneously in a region of sufficient size. This shall be achieved by combining the IOP with international programs and by collaboration between leading scientists in Europe, US, and other countries. Thus, the IOP, which we call Convective and Orographically-induced Precipitation Study (COPS), is a unique opportunity for an international field campaign featuring the newest generation of measurement systems such as scanning radar and lidar and leading to outstanding advances in atmospheric sciences. Please be aware of the common COPS/GOP/D-PHASE data policy, which you please find at http://cops.wdc-climate.de/ Summary: The Soundings were usually performed during the daytime of IOPs at two fixed locations. Scheduled launching times were at 05, 08, 11, 14, 17 and 20 UTC. Radiosounding at Burnhaupt le Bas, France: Sondes of the type DFM-06 manufactured by the Company GRAW (http://graw.de) have been used. Radiosounding at FZK, Karlsruhe, Germany Sondes of the type DFM-97 manufactured by GRAW (http://graw.de) have been used. From 26 July at 5:02 DFM-06 sondes of the same company have been used. On 25 July at 11:08 there was a test run of a DFM-06 sonde.
DOI: 10.5061/dryad.1225/4
title: R language source code.txt

description: The code in R language used in simulations
DOI: 10.5061/dryad.1295/1
title: AFLP data of Lythrum salicaria
DOI: 10.5061/dryad.1295/2
title: Quantitative trait data of Lythrum salicaria
DOI: 10.5061/dryad.1303/1
title: Clock genotype for blue tit breeding population 2006-2007

description: The file contains genotyping data and relevant covariates for the blue tit population breeding in Wytham woods 2006 and 2007.
DOI: 10.5061/dryad.1307/1
title: Dataset used for nuclear reconstruction of nuclear phylogeny

description: File used for inference of nuclearDNA relationships of focal species (L. callipterus and N. fasciatus) within Lamprologini. Specimens names correspond to isolate names in SOM file 1 of the paper. For commands given to MrBayes when reading this file see ReadMe below.
DOI: 10.5061/dryad.1307/2
title: Dataset used for reconstruction of mtDNA phylogeny
DOI: 10.5061/dryad.1307/3
title: Data used in phylogeographic analysis
DOI: 10.5061/dryad.1310/1
title: Alignment representing consensus of three other alignments

description: Consensus alignment generated by removing nucleotide positions for which the alignment differed when comparing three alignments generated via ClustalX (with gap costs of 10, 15, and 20).
DOI: 10.5061/dryad.1310/2
title: Alignment with character set denoting excluded base pairs

description: Alignment with a charset specifying nucleotide positions differing between three alignments generated using different gap costs in ClustalX. These sites were excluded to make the consensus alignment.
DOI: 10.5061/dryad.1310/3
title: Alignment generated using a gap cost of 10
DOI: 10.5061/dryad.1310/4
title: Alignment generated using a gap cost of 15
DOI: 10.5061/dryad.1771/1
title: InvasionNoteND1SequinGenbank.txt

description: Sequence information of the samples included in the paper
DOI: 10.5061/dryad.1800/1
title: Arraycellfiles.rar
DOI: 10.5061/dryad.1893/1
title: MunshiSouth.Pleucopus.NYC.genepop.txt

description: Genepop file of 18-locus microsatellite genotypes (2-digit format) for 15 populations of white-footed mice (Peromyscus leucopus) in New York City.
DOI: 10.5061/dryad.230t0/2
title: Vmax Data

description: Vmax Data.csv, Data description: Data used to create Figure 2: Average growth rate of evolved strains in vitro relative to the ancestral strain. The data gives the growth rate of the evolved strains relative to the ancestral strain from which all strains were derived. There are 6 replicate lines, which were averaged to give “Growth Rate Relative to Ancestor”. Data was collected in the laboratory using a spectrophotometer. Columns correspond to: Strain Replicate; the name allocated to each of the replicate lines, e.g. H1 corresponds to replicate line 1 evolved on hard agar. Vmax Replicate: The Vmax was measured independently twice in order to provide replicates. This value was averaged in statistical analysis. Agar Type on which Strain was Evolved: Strains were either evolved in hard or liquid agar. Vmax Relative to Ancestor: Vmax of evolved strain under each treatment group was divided by Vmax of ancestral strain under the same treatment to give a relative measurement of area dispersed. Averaged Vmax Replicates: Replicate relative Vmax measurements were averaged. Selection Type: Strains were either under positive or neutral artificial selection for dispersal.
DOI: 10.5061/dryad.40r16m35/1
title: Calmoniid_Procrustes_aligned

description: The TPS file generated by TPS software.  This file contains Procrustes superimposed and aligned landmarks. This file also contains ancestors and is the basis for Figure 5.
DOI: 10.5061/dryad.40r16m35/2
title: Euclidean_distances_categories

description: This Excel file was the basis for the statistical analyses. It contains Euclidean distances of the different morphological transitions including the groupings used.  Basis for the data file is Figures 6-8.
DOI: 10.5061/dryad.40r16m35/3
title: Relative_warps_plus_nodes

description: Columns show the first three dimensions of relative warps, and the nodes. Below is the tree with included node numbers.
DOI: 10.5061/dryad.8913/10
title: spV BP&P input file 2

description: spV BP&P input file 2
DOI: 10.5061/dryad.8913/11
title: Partial Mantel: Phil female morph distance

description: Philippine limnonectes female morphological distances for partial mantel test
DOI: 10.5061/dryad.8913/12
title: Partial Mantel: Phil male morph distance

description: Philippine limnonectes male morphological distances for partial mantel test
DOI: 10.5061/dryad.8913/13
title: Partial Mantel: Phil mtDNA genetic distance

description: Philippine limnonectes mitochondrial DNA genetic distances for partial mantel test
DOI: 10.5061/dryad.8913/14
title: Partial Mantel: Phil RAG1 genetic distance

description: Philippine limnonectes rag1 genetic distances for partial mantel test
DOI: 10.5061/dryad.8913/16
title: Partial Mantel: Sulawesi female morph distance

description: Sulawesi Limnonectes female morphological distances for partial mantel test
DOI: 10.5061/dryad.1310/5
title: Alignment generated using a gap cost of 20
DOI: 10.5061/dryad.1318/1
title: Alignment of mitochondrial data of miniature Arthroleptis

description: Nexus file containing alignment generated via ClustalX of mitochondrial DNA sequence data.
DOI: 10.5061/dryad.1324/1
title: ITS-1-20 intragroup.nxs

description: Preparing input file for A. gymnandrum and its close species
DOI: 10.5061/dryad.1324/2
title: ITS-1-20 intragroup.meg

description: File include all different genotype within A. gymnandrum
DOI: 10.5061/dryad.1324/3
title: ITS intersubgenera_20080420.nxs

description: This file contain ITS sequences of A. gymnandrum and its close species
DOI: 10.5061/dryad.1324/4
title: ITS-1-20 intragroup.nxs
DOI: 10.5061/dryad.1339/1
title: SSR data for maize landraces from Central Italy
DOI: 10.5061/dryad.1343/1
title: Thiel-Egenter_etal_MolEcol2009_Data.zip

description: AFLP scoring and sampling location information of two alpine plant species, Geum montanum and Geum reptans. Details given in separate ReadMe file.
DOI: 10.5061/dryad.1904/1
title: ScarelusNEXUSMolEcol

description: The nexus matrices containing all sequences used for the phylogenetic analysis
DOI: 10.5061/dryad.22rm1728/1
title: Genotypes of bears from Slovenia

description: The dataset contains genotypes of 510 brown bears genotyped on 22 microsatellite loci. They were obtained by genotyping tissue samples of legally killed bears between 2003 and 2008. Genotype on locus G10H is unrealiable (genotyping problems), and locus Mu26 has null alleles. Both were excluded from analysis, and have some missing data. All genotypes are complete on all other loci. Additional information is the age data (determined by tooth cross-section), sex and the date of mortality. Columns in the table: sample - laboratory name of the sample; sex - sex of the animal (recorded by the field crew and rechecked by genotyping the SRY marker); date_killed - the date on which the animal was killed; born - year of birth, estimated using the age data; age_months - age of the animal in months, calculated from the age determined by tooth cross-section, Feb 1 as the birthday and the recorded date of death. Genotypes: alleles at each locus are recorded in two columns, e.g. Cxx20_1, Cxx20_2. Missing data at loci G10H and Mu26 are recorded as "NA".
DOI: 10.5061/dryad.230t0/3
title: Biofilm Data

description: Biofilm Data.csv, Data description: Data used to create Figure 3: Biofilm production of evolved strains. Results show the average biofilm production of 6 isolates evolved in each experimental environment, relative to the ancestral strain from which all evolved strains were derived. Data was collected in the laboratory using a crystal violet staining method. Columns correspond to: Strain Replicate: the name allocated to each of the replicate lines, e.g. H1 corresponds to replicate line 1 evolved on hard agar. Bioflim Replicate: The biofilm production was measured independently eight times in order to provide replicates. This value was averaged in statistical analysis. Agar Type on which Strain was Evolved: Strains were either evolved in hard or liquid agar. Biofilm Relative to Ancestor: Vmax of evolved strain under each treatment group was divided by Vmax of ancestral strain under the same treatment to give a relative measurement of area dispersed. Averaged Biofilm Replicates: Replicate relative biofilm measurements were averaged. Selection Type: Strains were either under positive or neutral artificial selection for dispersal.
DOI: 10.5061/dryad.230t0/4
title: In vivo Growth Data

description: In vivo Growth Data.csv, Data description: Data used to create Figure 4: Average growth rate of evolved strains within a host (G. mellonella) relative to the ancestral strain. Data was collected in the laboratory. Columns correspond to: Strain Replicate: the name allocated to each of the replicate lines, e.g. H1 corresponds to replicate line 1 evolved on hard agar. In vivo Replicate: The in vivo growth rate production was measured independently four times in order to provide replicates. This value was averaged in statistical analysis. Agar Type on which Strain was Evolved: Strains were either evolved in hard or liquid agar. In vivo Relative to Ancestor: In vivo growth rate of evolved strain under each treatment group was divided by In vivo growth rate of ancestral strain under the same treatment to give a relative measurement of area dispersed. Averaged In vivo Replicates: Replicate relative in vivo growth rate measurements were averaged. Selection Type: Strains were either under positive or neutral artificial selection for dispersal. Caterpillar Fresh Weight: The weight of each caterpillar was measured before inoculation to control for the effects of caterpillar size on bacterial growth.
DOI: 10.5061/dryad.6cp7c2j1/1
title: moth_array_data

description: This data describes the floral measurements and fitness measures (seeds set and seeds sired) analyzed in the paper. The exact location and definition of measurements are described in Figure 2 of the manuscript.
DOI: 10.5061/dryad.8109/1
title: DryadMolEcoResData

description: Genotype data of adult common frogs from Kilpisjarvi Finland and Tvedora Sweden, using 145 microsatellite loci.
DOI: 10.5061/dryad.8111/1
title: Dryad sheet

description: 1. Adult: Genotype data of adult common frogs (Rana temporaria) in Kilpisjarvi Finland, using three microsatellite loci (RtSB03, BFG201, BFG266).2. Tadpole: Genotype of tadpoles (Rana temporaria) in Kilpisjarvi Finland, using three microsatellite loci (RtSB03, BFG201, BFG266).
DOI: 10.5061/dryad.8309/1
title: HS_Microsats_IBDWS_format

description: HS_Microsats_IBDWS_format.txt has the data for H. sublaevis in the format that is required for IBDWS, most importantly, it has the pairwise distances between populations in kilometers. The numbers of the populations correspond to the the numbers in the file Hs_La_Lm_Microsats.xls
DOI: 10.5061/dryad.8309/2
title: La_Microsats_IBDWS_format

description: La_Microsats_IBDWS_format.txt has the data for L acervorum in the format that is required for IBDWS, most importantly, it has the pairwise distances between populations in kilometers. The numbers of the populations correspond to the the numbers in the file Hs_La_Lm_Microsats.xls
DOI: 10.5061/dryad.8309/3
title: Lm_Microsats_IBDWS_format

description: Lm_Microsats_IBDWS_format.txt has the data for L muscorum in the format that is required for IBDWS, most importantly, it has the pairwise distances between populations in kilometers. The numbers of the populations correspond to the the numbers in the file Hs_La_Lm_Microsats.xls
DOI: 10.5061/dryad.8955/1
title: AFLPdata_Aegilops_Wheat
DOI: 10.5061/dryad.8976/1
title: GroussinGouy_ProteinAlignment

description: This data file contains the protein alignment used in the study of the evolutionary rates within Archaea. Note that before the concatenation of the gene families, the Gblocks program was used. The resulting alignments were concatenated as they were, so that everybody can reproduce our results. This explains why numerous gaps are present in the data. All experiments were also performed with an alignment personally and manually modified and this does not change anything to our conclusions. This second alignment is available on request. Information about the species and gene families are available on the Supplementary File associated to our MBE article.
DOI: 10.5061/dryad.8976/2
title: GroussinGouy_rRNAalignment

description: This data file contains the rRNA alignment used in the study of the evolutionary rates within Archaea. Information about the species are available on the Supplementary File associated to our MBE article.
DOI: 10.5061/dryad.qq106tm4/1
title: WG32ms_Alignment

description: Alignment in NEXUS format
DOI: 10.5061/dryad.1346/1
title: AFLP dataset for population analyses

description: AFLP data matrix for the 239 Malagasy R. rattus individuals genotyped for 249 AFLP markers.The two first columns identify the individual (individual name and population) and the 249 following columns are AFLP data (marker names are indicated in the first line, 1: presence of the peak, 0: absence).
DOI: 10.5061/dryad.1346/2
title: AFLP dataset for experimental plague challenge analyses

description: AFLP data matrix for the 249 AFLP markers in 103 Malagasy R. rattus plague-challenged individuals.The first columns identifies the individual (individual name), the second column refers to the experiment (low dose challenge or high dose challenge), the third column refers to the challenge issue (D: dying or S: surviving) and the 249 following columns are AFLP data (marker names are indicated in the first line, 1: presence of the peak, 0: absence).
DOI: 10.5061/dryad.1351/1
title: Microsatellite data for Gobionotothen gibberifrons

description: Data for 9 microsatellite loci for 165 Gobionotothen gibberifrons specimens from six sampling locations (Elephant Island, King George Island, Joinville Island a&b, South Georgia, South Sandwich Islands). The file is in MSA format (MSA=Microsatellite Analyzer: http://i122server.vu-wien.ac.at/MSA/MSA_download.html). Raw microsatellite data was transformed using a beta version of the software tandem (http://evolution.unibas.ch/salzburger/software/tandem.htm).
DOI: 10.5061/dryad.1355/1
title: input files.zip

description: Each folder contains 10 original input files for each of the 11 models in Table 1
DOI: 10.5061/dryad.1362/1
title: AFLP data for Ranunculus alpestris group
DOI: 10.5061/dryad.1844/1
title: Moller-Krull2007-MolBiolEvol.tre
DOI: 10.5061/dryad.1873/1
title: Phillips201000469Data.xls

description: Data mostly described in the paper.  Dam and Sire numbers refer to row numbers in the dataframe (so don't sort it!). sd column is difference beteeen sire and dam locations along transect and was not used in the analysis.
DOI: 10.5061/dryad.1956/1
title: pherrel%916oh

description: Excel file with the normalized amounts of pheromone compounds per female relative to Z9-16:OH. Abbreviations used in the column headings: file = GC file name, female = female name, odor = odor used in the experiment (Hv = Heliothis virescens pheromone odor, Hs = Heliothis subflexa pheromone odor), trt = treatment (NP = no pheromone, P = pheromone), total = total amount (in ng) of pheromone.
DOI: 10.5061/dryad.1ct56/1
title: DATA_Libbrecht_et_al_2011_EVOLUTION

description: Number of individuals produced for each caste, associated with both parental lineages.
DOI: 10.5061/dryad.7851/1
title: Combined Genotypes Table

description: Excel spreadsheet of binary allele calls for methylation-sensitive AFLP analysis of 33 Senecio plants. Primer combination (i.e. Eco+AAC/Mse+CTG) listed in each locus name.
DOI: 10.5061/dryad.7924/1
title: Abundance of parasitoids on their aphid hosts
DOI: 10.5061/dryad.8412/1
title: Genotype at Eda and lateral plate phenotypes

description: The file contains the genotypic information used in the manuscript. For each fish are indicated: 1) the population, 2) the morph according to Bell et al. 2004 definition (based on the presence of keel plates), 3) the morph according to Zuiganov's definition (based on the number of plates on one side, 4) the bilateral number of plates, 5) the genotype at marker Stn382, 6) the genotype at marker Stn381. Three populations are indicated, Myrdalsvatn and Eikelandsvatn are both parental populations (genotyped in 2008), and Nygårdspark is the experimental population. The genotype is not available for all fish. Allele code corresponds to rough estimates of fragment sizes (more precise information is provided in the manuscript)
DOI: 10.5061/dryad.8974/1
title: Detailed morphological data and insect index

description: The three sheets in this file describe the morphological data and insect index from all the experimental plots (N=4) in F2 and F3 generations: Sheet-1 describes the relevant data from wa strain in F2 generation; Sheet-2 describes the relevant data from wb strain in F2 generation; and Sheet-3 describes the relevant data in F3 generation. The morphological traits include plant height (cm), number of tillers per plant, number of panicles per plant, number of seeds per plant, seed set (%), and 1000-seed weight under low vs. natural insect pressure, as well as pure vs. mixed cultivation.
DOI: 10.5061/dryad.8984/1
title: MAP_alignment_of_complete_dataset
DOI: 10.5061/dryad.qq106tm4/2
title: WG32ms_RAxMLphylogram

description: RAxML tree (NEXUS format)
DOI: 10.5061/dryad.qq106tm4/3
title: WG32ms_SAppendices-v13

description: Supplementary material: online-only appendices (Appendices S1-S6)
DOI: 10.5061/dryad.qq106tm4/4
title: WG32ms_SFigures-v13

description: Supplementary material: online-only figures (Figures S0-S42)
DOI: 10.5061/dryad.1252/1
title: Information for kingsnake specimens

description: Clade designations, museum voucher numbers, GenBank accession numbers, general localities, and latitude/longitude data for kingsnake specimens in the molecular dataset
DOI: 10.5061/dryad.1252/2
title: Presence localities for kingsnakes

description: Larger presence locality dataset, containing specimens from the molecular analysis as well as older museum records. Used to generate niche models for the separate lineages.
DOI: 10.5061/dryad.1358/1
title: GlossinaGUEQ_allgenotypesGENEPOP.txt
DOI: 10.5061/dryad.195qg/1
title: project_data

description: Microsatellite data for 397 individuals
DOI: 10.5061/dryad.7998/3
title: STRUCTURE Data File for all A. spinosa populations

description: This is the project file for the STRUCTURE analyses covering all A. spinosa populations. The .spj file containing the run parameters are contained in a separate file.
DOI: 10.5061/dryad.7998/5
title: STRUCTURE .spj file for eastern Caribbean A. spinosa populations
DOI: 10.5061/dryad.7998/6
title: STRUCTURE .spj file for western Caribbean A. spinosa populations
DOI: 10.5061/dryad.8048/2
title: R code to analyze raw data for rate of adaptation
DOI: 10.5061/dryad.8048/3
title: Raw data to calculate effective population sizes