cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5j38kx2n
title: MassIVE MSV000099870 - Molecular Composition of Synbio Milk and Potential Implications for Human Health and the Environment
title: Synbio milk, containing recombinant bovine beta-lactoglobulin (BLG), produced in the fungus Trichoderma reesei, was deficient nutritionally compared to bovine milk. It also contained both fungal proteins and fungal metabolites never verified as safe for human consumption. By three independent methods synbio milk was found to contain predominantly fungal protein, not the 94% to 99% BLG, claimed by the product developer. By (1) shotgun proteomics, (2) ELISA and classical protein analysis, and (3) simulated mixing experiments, measuring percent deviation of the amino acid composition of synbio milk from that of bovine milk, fungal protein content was found to be 75.1%, 86.5% and 90% to 95%, respectively. Additionally, high sensitivity untargeted mass spectrometry revealed substantial levels of 69 nutrients in bovine milk, most of which were absent from synbio milk. This analysis also revealed 93 compounds in synbio milk, likely byproducts/waste products of fungal fermentation, whose chemical identities could not be established searching databases containing mass spectral data for tens of thousands of compounds. This suggests they are novel compounds. Neither these nor the fungal proteins found in the synbio milk have been tested for safety or allergenicity at exposure levels relevant for synbio milk consumption. Therefore, comprehensive toxicity and allergenicity testing are needed to assess the safety of synbio milk for human consumption.
DOI: 10.25345/c5nv99q4h
title: MassIVE MSV000099873 - Nrf2 Promotes Regulatory T Cell Differentiation by Reprogramming Glutamine Metabolism to Alleviate Colitis
title: Metabolomics data for "Nrf2 Promotes Regulatory T Cell Differentiation by Reprogramming Glutamine Metabolism to Alleviate Colitis"
DOI: 10.25345/c5w95121c
title: MassIVE MSV000099876 - A RARE CHROMENE-CORE ANTIMYCOBACTERIAL RIFAMYCIN FROM A NEW ACTINOBACTERIUM
title: Isolation of a rare rifamycin analog containing chromenofunran core from a soil actinobacterium. Comprehensive MS/MS fragmentation and NMR analysis were carried out for structure characterization.
DOI: 10.25948/gbta-yp35
title: HEVAE Vegetation Groundwater Dependent Ecosystems Value - Hunter / Central Rivers

description: NSW DoI Water has adopted the Guidelines for Identifying High Ecological Value Aquatic Ecosystems (HEVAE) framework developed by the Australian Commonwealth Government. In the current assessment for NSW, the HEVAE consists of four key criteria which include diversity, distinctiveness, naturalness and vital habitat. Therefore, the HEVAE vegetation GDE value layer is a combination of four individual criterion layers. The final or overall HEVAE score was determined for vegetation PCT polygons which has a high probability of being groundwater dependent. This was calculated by adding together the final scores for each criterion (Naturalness, Diversity, Distinctiveness and Vital Habitat). This score was then standardised by dividing by the maximum combined HEVAE score for a whole catchment’s vegetation GDE polygons to provide an even spread of score outcomes between 0 (lowest) and 1 (highest). For ease of data modelling and management, the dataset was divided into the following catchment management areas; Border Rivers-Gwydir, Central Tablelands, Central West, Hawkesbury-Nepean, Hunter-Central Rivers, Lachlan, Lower Murray Darling, Murray, Murrumbidgee, Namoi, Northern Rivers, Southern Rivers, Southern Tablelands, Sydney Metro and Western Division (subdivided further into the IBRA Sub regions).
DOI: 10.25345/c5125qp5g
title: MassIVE MSV000099872 - Nrf2 Promotes Regulatory T Cell Differentiation by Reprogramming Glutamine Metabolism to Alleviate Colitis
title: Nrf2 Promotes Regulatory T Cell Differentiation by Reprogramming Glutamine Metabolism to Alleviate Colitis
DOI: 10.25345/c54t6fg8t
title: MassIVE MSV000099871 - Commensal derived short chain fatty acids disrupt Staphylococcus aureus lipid membrane homeostasis
title: Quantitative, tandem mass tag (TMT) based proteomics for Staphylococcus aureus JE2 grown in LB alone or LB supplemented with the commensal short-chain fatty acids propionate or butyrate. Mid-log cells (OD600 0.3) were lysed (urea/thiourea/TEAB buffer), reduced/alkylated, barocycled, digested, TMT-labeled, and analyzed on an Orbitrap Eclipse using HCD. Raw files and search results (Proteome Discoverer; UniProt S. aureus pan-proteome UP000008816 plus common contaminants) are included. The dataset supports the mBio study Commensal-derived short-chain fatty acids disrupt membrane lipid homeostasis in Staphylococcus aureus (Fletcher et al.) and enables assessment of global protein abundance changes elicited by SCFAs that converge on lipid/branched-chain fatty acid metabolism, cell envelope homeostasis, and virulence regulation. Differential proteins highlighted in the manuscript include induction of acetolactate synthase components (BudA/AlsS) and NanA in propionate, increased dihydropicolinate synthases (DapA/B/H) in butyrate, and decreased RecR and NrdI in both conditions. These data provide a resource to explore SCFA-driven remodeling of the S. aureus proteome linked to membrane physiology and antimicrobial sensitivity.
DOI: 10.25345/c5rn30m8z
title: MassIVE MSV000099878 - Human Primary Airway Epithelium Response to HCoV-229E Infection
title: The purpose of this experiment was to evaluate the human host cellular response to wild-type Human coronavirus strain 229E (HCoV-229E) infection of primary human airway epithelial cell cultures. Sample data was obtained from mock-infected primary human airway epithelial cell cultures at 24 hours post infection. Primary human conducting airway epithelial cells were grown at air-liquid interface. Samples were harvested and processed for RNA sequencing (RNA-Seq) expression analysis and limited proteolysis proteomics. Wild-type human coronavirus strain 229E (HCoV-229E) infected and mock-infected primary human airway epithelial cell cultures with and without primary human lung macrophages were harvested at 24 hour post infection (MOI 3). Samples were processed for RNA sequencing (RNA-Seq; in Trizol) expression analysis and limited proteolysis proteomics (LiP). For LiP, cells were lysed by freeze thaw cycles and each replicate was split in half and treated for 1 minute with proteinase K and then trypsin and the other half just treated with trypsin prior to processing for proteomic analysis. Search for the DDA data was performed using MaxQuant, following the label-free quantification and match between runs (LFQ-MBR) workflow. The DIA data was searched with FragPipe/DIA-NN. The database search results were further processed using in-house codes which filtered and normalized the data, and added statistical parameters.
DOI: 10.25345/c5mw28t59
title: MassIVE MSV000099877 - Retention_time_match_lithocholic_acid_standard_mix
title: MS/MS fragmentation data of lithocholic acid alkylamine mix acquired on Q Exactive - with chromatographic separation on a Phenomenex polar C18 column.
DOI: 10.15468/dl.tpqrjs
title: Occurrence Download

description: A dataset containing 6032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Maldives",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 6032 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029891-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30415954
title: A long-term experiment showed how coastal groundwater salinization impaired tree carbon–water balance

description: In this study, we address the pressing problem of coastal forest decline with a long-term experiment with a factorial design of sedimentary nutrient fertilization and tree density. Here we show, following the first decade of enhancement by eCO<sub>2</sub> and nutrient fertilization, tree growth strikingly declined toward higher mortality risks in coastal forests experiencing accelerated SLR. In the first decade (1995-2005), tree basal area increment (BAI) positively responded to eCO<sub>2</sub> and nutrient supply, with iWUE (using tree-ring isotopes) slightly increased. However, progressive increases in groundwater salinity in the following years (2005-2015) caused severe stomatal closure and photoinhibition, which remarkably decreased Leaf internal CO<sub>2</sub> concentration and<sub> </sub>increased iWUE. These physiological changes consequently translated into decreased BAI and enhanced tree mortality, which was further exacerbated by tree competition. These results help explain ghost forest formation in many coastal areas and support a transient stimulatory effect of CO<sub>2 </sub>uptake in these areas.
DOI: 10.6084/m9.figshare.30415954.v1
title: A long-term experiment showed how coastal groundwater salinization impaired tree carbon–water balance

description: In this study, we address the pressing problem of coastal forest decline with a long-term experiment with a factorial design of sedimentary nutrient fertilization and tree density. Here we show, following the first decade of enhancement by eCO<sub>2</sub> and nutrient fertilization, tree growth strikingly declined toward higher mortality risks in coastal forests experiencing accelerated SLR. In the first decade (1995-2005), tree basal area increment (BAI) positively responded to eCO<sub>2</sub> and nutrient supply, with iWUE (using tree-ring isotopes) slightly increased. However, progressive increases in groundwater salinity in the following years (2005-2015) caused severe stomatal closure and photoinhibition, which remarkably decreased Leaf internal CO<sub>2</sub> concentration and<sub> </sub>increased iWUE. These physiological changes consequently translated into decreased BAI and enhanced tree mortality, which was further exacerbated by tree competition. These results help explain ghost forest formation in many coastal areas and support a transient stimulatory effect of CO<sub>2 </sub>uptake in these areas.
DOI: 10.25345/c5h41k11w
title: MassIVE MSV000099879 - GNPS - Dataset Creation from GNPS Molcular Networking - e519d5a37fcf4f228343b54351857be0 Pacific Ocean Abyssal Sediments
title: LCMS of Pacific Ocean abyssal sediment extracts. Sediment cores were collected at 3N 7N and 11N along a transect at 156W in October 2020.
DOI: 10.15468/dl.2qwajf
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bursera lancifolia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 549 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029892-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ck793t
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((121.33189 9.78801,108.12029 21.04787,127.18702 28.55445,163.96926 44.16814,25.69803 83.50263,17.89119 43.11722,121.33189 9.78801))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artemisia umbrosa"
 ]
}

 The dataset includes 479 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029896-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.as8xz9
title: Occurrence Download

description: A dataset containing 23025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Myanmar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 23025 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029894-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5cc0v66n
title: MassIVE MSV000099880 - Pacific Ocean abyssal sediment extracts
title: Marine sediment samples were collected in October 2020 from three abyssal sites in tropical Pacific Ocean (3N, 7N, 11N) along a transect at 152W.
DOI: 10.15468/dl.ka44k6
title: Occurrence Download

description: A dataset containing 6113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-128.35576 27.98933,-58.54709 27.98933,-58.54709 54.0688,-128.35576 54.0688,-128.35576 27.98933))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaeagnus angustifolia"
 ]
}

 The dataset includes 6113 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029895-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he3wgv
title: Occurrence Download

description: A dataset containing 2490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Drosophila melanogaster"
 ]
}

 The dataset includes 2490 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029897-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17595485
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251113b Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251113b Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17595486
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251113b Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251113b Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.25948/z3xr-ae10
title: HEVAE Vegetation Groundwater Dependent Ecosystems Value - Sydney Metropolitan

description: NSW DoI Water has adopted the Guidelines for Identifying High Ecological Value Aquatic Ecosystems (HEVAE) framework developed by the Australian Commonwealth Government. In the current assessment for NSW, the HEVAE consists of four key criteria which include diversity, distinctiveness, naturalness and vital habitat. Therefore, the HEVAE vegetation GDE value layer is a combination of four individual criterion layers. The final or overall HEVAE score was determined for vegetation PCT polygons which has a high probability of being groundwater dependent. This was calculated by adding together the final scores for each criterion (Naturalness, Diversity, Distinctiveness and Vital Habitat). This score was then standardised by dividing by the maximum combined HEVAE score for a whole catchment’s vegetation GDE polygons to provide an even spread of score outcomes between 0 (lowest) and 1 (highest). For ease of data modelling and management, the dataset was divided into the following catchment management areas; Border Rivers-Gwydir, Central Tablelands, Central West, Hawkesbury-Nepean, Hunter-Central Rivers, Lachlan, Lower Murray Darling, Murray, Murrumbidgee, Namoi, Northern Rivers, Southern Rivers, Southern Tablelands, Sydney Metro and Western Division (subdivided further into the IBRA Sub regions).
DOI: 10.25948/x969-m936
title: HEVAE Vegetation Groundwater Dependent Ecosystems Value - Southern Rivers

description: NSW DoI Water has adopted the Guidelines for Identifying High Ecological Value Aquatic Ecosystems (HEVAE) framework developed by the Australian Commonwealth Government. In the current assessment for NSW, the HEVAE consists of four key criteria which include diversity, distinctiveness, naturalness and vital habitat. Therefore, the HEVAE vegetation GDE value layer is a combination of four individual criterion layers. The final or overall HEVAE score was determined for vegetation PCT polygons which has a high probability of being groundwater dependent. This was calculated by adding together the final scores for each criterion (Naturalness, Diversity, Distinctiveness and Vital Habitat). This score was then standardised by dividing by the maximum combined HEVAE score for a whole catchment’s vegetation GDE polygons to provide an even spread of score outcomes between 0 (lowest) and 1 (highest). For ease of data modelling and management, the dataset was divided into the following catchment management areas; Border Rivers-Gwydir, Central Tablelands, Central West, Hawkesbury-Nepean, Hunter-Central Rivers, Lachlan, Lower Murray Darling, Murray, Murrumbidgee, Namoi, Northern Rivers, Southern Rivers, Southern Tablelands, Sydney Metro and Western Division (subdivided further into the IBRA Sub regions).
DOI: 10.25948/axba-6944
title: HEVAE Vegetation Groundwater Dependent Ecosystems Value - Western Division

description: NSW DoI Water has adopted the Guidelines for Identifying High Ecological Value Aquatic Ecosystems (HEVAE) framework developed by the Australian Commonwealth Government. In the current assessment for NSW, the HEVAE consists of four key criteria which include diversity, distinctiveness, naturalness and vital habitat. Therefore, the HEVAE vegetation GDE value layer is a combination of four individual criterion layers. The final or overall HEVAE score was determined for vegetation PCT polygons which has a high probability of being groundwater dependent. This was calculated by adding together the final scores for each criterion (Naturalness, Diversity, Distinctiveness and Vital Habitat). This score was then standardised by dividing by the maximum combined HEVAE score for a whole catchment’s vegetation GDE polygons to provide an even spread of score outcomes between 0 (lowest) and 1 (highest). For ease of data modelling and management, the dataset was divided into the following catchment management areas; Border Rivers-Gwydir, Central Tablelands, Central West, Hawkesbury-Nepean, Hunter-Central Rivers, Lachlan, Lower Murray Darling, Murray, Murrumbidgee, Namoi, Northern Rivers, Southern Rivers, Southern Tablelands, Sydney Metro and Western Division (MDB and far west subdivided further into the IBRA Sub regions).
DOI: 10.15468/dl.43cm2c
title: Occurrence Download

description: A dataset containing 996161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachypodium stacei, Brassica oleracea, Bretschneidera sinensis, Musa troglodytarum, Ormosia emarginata, Ormosia semicastrata, Paspalum notatum, Tripidium rufipilum, Sorghum bicolor, Spodiopogon sagittifolius, Theobroma grandiflorum, Macrotyloma uniflorum, Prunus speciosa, Rubus corchorifolius, Anethum graveolens, Apios americana, Begonia fimbristipula, Citrullus amarus, Citrullus colocynthis, Citrullus lanatus, Citrullus mucosospermus, Citrullus naudinianus, Citrullus rehmii, Cornus wilsoniana, Corylus americana, Daucus carota, Fagopyrum tataricum, Gongronemopsis tenacissima, Gynochthodes officinalis, Hansenia weberbaueriana, Hoya carnosa, Incarvillea sinensis, Lablab purpureus, Murraya koenigii, Mussaenda pubescens, Ophiorrhiza japonica, Penstemon barbatus, Phaseolus vulgaris, Rhodomyrtus tomentosa, Santalum album, Sphenostylis stenocarpa, Trichosanthes truncata, Averrhoa carambola, Citrullus ecirrhosus, Lagenaria siceraria, Metrosideros polymorpha, Momordica charantia, Acorus gramineus, Acorus calamus, Avena clauda)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 996161 records from 4499 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029868-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7nuzf
title: Occurrence Download

description: A dataset containing 3725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Tanzania, United Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is Apidae"
 ]
}

 The dataset includes 3725 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001092-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48328/tudatalib-1749
title: 2025_Stegmann_Enhancing_Silver_Sintering

description: Updated research and raw data to publication: Enhancing Silver Sintering - Effect of Copper Substrate Microstructure on Silver Adhesion and Bond Strength
DOI: 10.15468/dl.4bt89k
title: Occurrence Download

description: A dataset listing the 254 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON((100.55181 13.734,100.55278 13.72523,100.55744 13.72535,100.55744 13.72563,100.56024 13.72559,100.55968 13.73012,100.55968 13.73289,100.55932 13.7338,100.55181 13.734))"
 ]
}

 The dataset's 254 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001082-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccbtwu
title: Occurrence Download

description: A dataset containing 4540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia, South America, Oceania)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Theobroma cacao L.",
 "Year 2010-2025"
 ]
}

 The dataset includes 4540 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011930-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rukurk
title: Occurrence Download

description: A dataset containing 1286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ambystoma barbouri Kraus & Petranka, 1989"
 ]
}

 The dataset includes 1286 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011932-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzxdp7
title: Occurrence Download

description: A dataset containing 1176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia melanoxylon",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1176 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024559-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/makv-xcak
title: Measurement of Particle_number_concentration at Barrow

description: Measurement of Particle_number_concentration at Barrow