cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5665669.v1
title: Additional file 5: Table S5. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: IPA canonical pathways identified at 24 h and 48 h from NDL treated MCF-7 cells. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5665660
title: Additional file 5 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S14 through S18. Each table in the Excel workbook contains results of a run of IntroMap, using frac=0.05 and t=0.90, on the 20160409AC-1234 genome for varying NGS read coverages. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5665660.v1
title: Additional file 5 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S14 through S18. Each table in the Excel workbook contains results of a run of IntroMap, using frac=0.05 and t=0.90, on the 20160409AC-1234 genome for varying NGS read coverages. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5665651
title: Additional file 4: Table S4. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: The GO term analysis by DAVID of genes differentially expressed by MCF-7 cells treated with NDL. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5665651.v1
title: Additional file 4: Table S4. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: The GO term analysis by DAVID of genes differentially expressed by MCF-7 cells treated with NDL. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5665642
title: Additional file 4 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S2 through S7. Each table in the Excel workbook contains results of a run of IntroMap on in silico simulated data using B. rapa as the recurrent parent for a given frac and threshold combination. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.5665642.v1
title: Additional file 4 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S2 through S7. Each table in the Excel workbook contains results of a run of IntroMap on in silico simulated data using B. rapa as the recurrent parent for a given frac and threshold combination. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.5665636
title: Additional file 3: Table S3. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Genes differentially expressed at both 24 h and 48 h of treatment with NDL. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5665636.v1
title: Additional file 3: Table S3. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Genes differentially expressed at both 24 h and 48 h of treatment with NDL. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5665609
title: Additional file 1: of Parallel loss of introns in the ABCB1 gene in angiosperms

description: Table S1. ABCB1 and ABCB19 sequences analyzed and their source. Table S2. Presence/absence polymorphism of introns in ABCB19 in sequenced angiosperms. Table S3. Presence/absence polymorphisms of introns in ABCB genes in Arabidopsis and rice, and of ABCB1 and ABCB19 in Amborella trichopoda. Table S4. Location in intron 7 of motif GTAACATG and number of mismatches present in the motif in 81 angiosperms. Table S5. Location in intron 7 of motif TTTKGTCARSAA and number of mismatches present in the motif in 81 angiosperms. Table S6. Two top motifs identified by MEME in ABCB1 intron 7 and top motif identified in 1080 bp of sequence upstream of randomly selected genes across six monocots and four dicots, and their corresponding e-value. The analysis was repeated 100 times. Table S7. Two top motif identified by MEME in ABCB1 intron 7 and top motif identified in 1080 bp of sequence downstream of a random starting point in randomly selected genes across six monocots and four dicots, and their corresponding e-value. The analysis was repeated 100 times. Table S8. Size of introns of ABCB1 across monocots. Table S9. Size of introns of ABCB19 across monocots. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.5665609.v1
title: Additional file 1: of Parallel loss of introns in the ABCB1 gene in angiosperms

description: Table S1. ABCB1 and ABCB19 sequences analyzed and their source. Table S2. Presence/absence polymorphism of introns in ABCB19 in sequenced angiosperms. Table S3. Presence/absence polymorphisms of introns in ABCB genes in Arabidopsis and rice, and of ABCB1 and ABCB19 in Amborella trichopoda. Table S4. Location in intron 7 of motif GTAACATG and number of mismatches present in the motif in 81 angiosperms. Table S5. Location in intron 7 of motif TTTKGTCARSAA and number of mismatches present in the motif in 81 angiosperms. Table S6. Two top motifs identified by MEME in ABCB1 intron 7 and top motif identified in 1080 bp of sequence upstream of randomly selected genes across six monocots and four dicots, and their corresponding e-value. The analysis was repeated 100 times. Table S7. Two top motif identified by MEME in ABCB1 intron 7 and top motif identified in 1080 bp of sequence downstream of a random starting point in randomly selected genes across six monocots and four dicots, and their corresponding e-value. The analysis was repeated 100 times. Table S8. Size of introns of ABCB1 across monocots. Table S9. Size of introns of ABCB19 across monocots. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.5665606
title: Additional file 2 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Table S1. This spreadsheet contains the primers used for the verification of the #174-12-26 regions of introgression detected by IntroMap analysis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5665606.v1
title: Additional file 2 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Table S1. This spreadsheet contains the primers used for the verification of the #174-12-26 regions of introgression detected by IntroMap analysis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5665600
title: Additional file 2: Table S2. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Differentially expressed genes in MCF-7 cells after treatment with NDL at 24 h and 48 h. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5665600.v1
title: Additional file 2: Table S2. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Differentially expressed genes in MCF-7 cells after treatment with NDL at 24 h and 48 h. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5665591
title: Additional file 1 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S8 through S13. Each table in the Excel workbook contains results of a run of IntroMap on in silico simulated data using B. oleracea as the recurrent parent for a given frac and threshold combination. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5665591.v1
title: Additional file 1 of IntroMap: a signal analysis based method for the detection of genomic introgressions

description: Tables S8 through S13. Each table in the Excel workbook contains results of a run of IntroMap on in silico simulated data using B. oleracea as the recurrent parent for a given frac and threshold combination. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5665576
title: Additional file 1: Table S1. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Primers used for Real-time RT-PCR. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665576.v1
title: Additional file 1: Table S1. of Nam Dia long, a Vietnamese folk formula, induces apoptosis in MCF-7 cells through various mechanisms of action

description: Primers used for Real-time RT-PCR. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665555
title: Additional file 9: Table S4. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: IDs, median-centered intensity values and Blast annotation of orthologue-matched DEGs represented in the heat maps of Figs.Â 4, 5, 6 and 7. (XLSX 1559Â kb)
DOI: 10.6084/m9.figshare.5665555.v1
title: Additional file 9: Table S4. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: IDs, median-centered intensity values and Blast annotation of orthologue-matched DEGs represented in the heat maps of Figs.Â 4, 5, 6 and 7. (XLSX 1559Â kb)
DOI: 10.6084/m9.figshare.5665543
title: Additional file 4: Table S4. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Number of essential childbirth practices (SCC items) performed at baseline and endline (including incomplete observations). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5665543.v1
title: Additional file 4: Table S4. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Number of essential childbirth practices (SCC items) performed at baseline and endline (including incomplete observations). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5665534
title: MOESM1 of A retrospective study on tuberculosis treatment outcomes at Jinka General Hospital, southern Ethiopia

description: Additional file 1. 10 years (2004â 2014) TB DOTS data of JGH, Ethiopia. This is a file which contains information has been used for data analysis.
DOI: 10.6084/m9.figshare.5665534.v1
title: MOESM1 of A retrospective study on tuberculosis treatment outcomes at Jinka General Hospital, southern Ethiopia

description: Additional file 1. 10 years (2004â 2014) TB DOTS data of JGH, Ethiopia. This is a file which contains information has been used for data analysis.
DOI: 10.6084/m9.figshare.5665525
title: Additional file 3: Table S3. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Distribution of observation completion. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5665525.v1
title: Additional file 3: Table S3. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Distribution of observation completion. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5665516
title: Additional file 7: Table S3. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Linking of wheat and barley orthologue candidates. (XLSX 2951Â kb)
DOI: 10.6084/m9.figshare.5665516.v1
title: Additional file 7: Table S3. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Linking of wheat and barley orthologue candidates. (XLSX 2951Â kb)
DOI: 10.6084/m9.figshare.5665501
title: Additional file 2: Table S2. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Characteristics of nurse-midwives. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5665501.v1
title: Additional file 2: Table S2. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Characteristics of nurse-midwives. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5665483
title: Additional file 6: Table S2. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Lists of wheat and barley genes differentially regulated in host and nonhost interactions with Blumeria, Magnaporthe and Puccinia (lists of the subsets according to Venn diagrams in Fig.Â 2b). Signal values are an output of the GeneSpring GX software and given as log base 2 values. Fold changes are calculated accordingly. (XLSX 3027Â kb)
DOI: 10.6084/m9.figshare.5665483.v1
title: Additional file 6: Table S2. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Lists of wheat and barley genes differentially regulated in host and nonhost interactions with Blumeria, Magnaporthe and Puccinia (lists of the subsets according to Venn diagrams in Fig.Â 2b). Signal values are an output of the GeneSpring GX software and given as log base 2 values. Fold changes are calculated accordingly. (XLSX 3027Â kb)
DOI: 10.6084/m9.figshare.5665480
title: Additional file 1: Table S1. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Final SCC used in the current study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5665480.v1
title: Additional file 1: Table S1. of Improving quality of care for maternal and newborn health: a pre-post evaluation of the Safe Childbirth Checklist at a hospital in Bangladesh

description: Final SCC used in the current study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5665465
title: MOESM2 of Gene expression in the chicken caecum is dependent on microbiota composition

description: Additional file 2. Differentially expressed proteins in at least one experimental group inoculated with live bacteria compared to expression in germ-free chickens. There were 149 proteins differentially expressed in the caecum of germ-free and colonised chickens. Fifty the most induced or suppressed proteins are presented in TableÂ 2 and all 149 differentially expressed proteins are listed.
DOI: 10.6084/m9.figshare.5665465.v1
title: MOESM2 of Gene expression in the chicken caecum is dependent on microbiota composition

description: Additional file 2. Differentially expressed proteins in at least one experimental group inoculated with live bacteria compared to expression in germ-free chickens. There were 149 proteins differentially expressed in the caecum of germ-free and colonised chickens. Fifty the most induced or suppressed proteins are presented in TableÂ 2 and all 149 differentially expressed proteins are listed.
DOI: 10.6084/m9.figshare.5665450
title: MOESM4 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 4: Table S3. Correlations (Pearson’s r) between the three isoforms of TGF-β and immune annotated single gene transcriptional counts in a subgroup of CFS patients (n = 29).
DOI: 10.6084/m9.figshare.5665450.v1
title: MOESM4 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 4: Table S3. Correlations (Pearson’s r) between the three isoforms of TGF-β and immune annotated single gene transcriptional counts in a subgroup of CFS patients (n = 29).
DOI: 10.6084/m9.figshare.5665447
title: MOESM1 of Gene expression in the chicken caecum is dependent on microbiota composition

description: Additional file 1. List of primers used in quantitative RT PCR in the study.
DOI: 10.6084/m9.figshare.5665447.v1
title: MOESM1 of Gene expression in the chicken caecum is dependent on microbiota composition

description: Additional file 1. List of primers used in quantitative RT PCR in the study.
DOI: 10.6084/m9.figshare.5665444
title: Additional file 4: Table S1. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Lists of wheat and barley genes general regulated after pathogen inoculation (lists of the subsets according to Venn diagrams in Fig.Â 2a). Signal values are an output of the GeneSpring GX software and given as log base 2 values. Fold changes are calculated accordingly. (XLSX 22727Â kb)
DOI: 10.6084/m9.figshare.5665444.v1
title: Additional file 4: Table S1. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: Lists of wheat and barley genes general regulated after pathogen inoculation (lists of the subsets according to Venn diagrams in Fig.Â 2a). Signal values are an output of the GeneSpring GX software and given as log base 2 values. Fold changes are calculated accordingly. (XLSX 22727Â kb)
DOI: 10.6084/m9.figshare.5665435
title: MOESM3 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 3: Table S2. Correlations (Pearson’s r) between the three isoforms of TGF-β and immune markers, neuroendocrine markers and clinical markers in CFS patients and healthy controls.
DOI: 10.6084/m9.figshare.5665435.v1
title: MOESM3 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 3: Table S2. Correlations (Pearson’s r) between the three isoforms of TGF-β and immune markers, neuroendocrine markers and clinical markers in CFS patients and healthy controls.
DOI: 10.6084/m9.figshare.5665420
title: Additional file 4: of Alternative patterns of sex chromosome differentiation in Aedes aegypti (L)

description: Genes with significant sex-association values common to both populations. Vectorbase number (VBN), transcript, Chr, function, Function_description_Vectorbase. (XLSX 166Â kb)
DOI: 10.6084/m9.figshare.5665420.v1
title: Additional file 4: of Alternative patterns of sex chromosome differentiation in Aedes aegypti (L)

description: Genes with significant sex-association values common to both populations. Vectorbase number (VBN), transcript, Chr, function, Function_description_Vectorbase. (XLSX 166Â kb)
DOI: 10.6084/m9.figshare.5665417
title: MOESM2 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 2: Table S1. Plasma levels of TGF-β1, TGF-β2, TGF-β3 in individual CFS patients and healthy controls (raw data).
DOI: 10.6084/m9.figshare.5665417.v1
title: MOESM2 of Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome

description: Additional file 2: Table S1. Plasma levels of TGF-β1, TGF-β2, TGF-β3 in individual CFS patients and healthy controls (raw data).
DOI: 10.6084/m9.figshare.5665405
title: MOESM1 of Transforming growth factor beta (TGF-Î˛) in adolescent chronic fatigue syndrome

description: Additional file 1. Methods for post hoc-subgrouping of patients in the NorCAPITAL project according to the Canada 2003 and Fukuda case definitions.
DOI: 10.6084/m9.figshare.5665405.v1
title: MOESM1 of Transforming growth factor beta (TGF-Î˛) in adolescent chronic fatigue syndrome

description: Additional file 1. Methods for post hoc-subgrouping of patients in the NorCAPITAL project according to the Canada 2003 and Fukuda case definitions.
DOI: 10.6084/m9.figshare.5665372
title: Additional file 1: of Alternative patterns of sex chromosome differentiation in Aedes aegypti (L)

description: Sequencing Statistics. SenAae (PK10) and Aaa (Thai) HTS details. Total trimmed reads aligned to the AaegL4 reference; percent reads mapped; percent properly paired; number of variant sites; ratio of variant sites per aligned nucleotide*1000. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5665372.v1
title: Additional file 1: of Alternative patterns of sex chromosome differentiation in Aedes aegypti (L)

description: Sequencing Statistics. SenAae (PK10) and Aaa (Thai) HTS details. Total trimmed reads aligned to the AaegL4 reference; percent reads mapped; percent properly paired; number of variant sites; ratio of variant sites per aligned nucleotide*1000. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5665351
title: Additional file 7: Table S4. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: log2 transformed ratio valuesÂ of the 266 genes. (XLSX 289 kb)
DOI: 10.6084/m9.figshare.5665351.v1
title: Additional file 7: Table S4. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: log2 transformed ratio valuesÂ of the 266 genes. (XLSX 289 kb)
DOI: 10.6084/m9.figshare.5665339
title: Additional file 1: of Selection bias in clinical stroke trials depending on ability to consent

description: Full dataset supporting the manuscript. (CSV 60Â kb)
DOI: 10.6084/m9.figshare.5665339.v1
title: Additional file 1: of Selection bias in clinical stroke trials depending on ability to consent

description: Full dataset supporting the manuscript. (CSV 60Â kb)
DOI: 10.6084/m9.figshare.5665282
title: Additional file 1: of Transcriptomic analysis of wound xylem formation in Pinus canariensis

description: Wound-responsive differentially expressed genes. FC: fold change. FDR: adjusted p-value by False Discovery Rate. In bold, statistically significant values. (XLSX 151 kb)
DOI: 10.6084/m9.figshare.5665282.v1
title: Additional file 1: of Transcriptomic analysis of wound xylem formation in Pinus canariensis

description: Wound-responsive differentially expressed genes. FC: fold change. FDR: adjusted p-value by False Discovery Rate. In bold, statistically significant values. (XLSX 151 kb)
DOI: 10.6084/m9.figshare.5665279
title: MOESM3 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 3. Reciprocal Best Hits. Gene couples with reciprocal best hits between the Araport11 annotation of Col-0 and the GeneSet_Nd1_v1.1 are listed.
DOI: 10.6084/m9.figshare.5665279.v1
title: MOESM3 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 3. Reciprocal Best Hits. Gene couples with reciprocal best hits between the Araport11 annotation of Col-0 and the GeneSet_Nd1_v1.1 are listed.
DOI: 10.6084/m9.figshare.5665261
title: Additional file 3: Table S3. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: FPKM valuesÂ of 9840 genes. (XLSX 2563 kb)
DOI: 10.6084/m9.figshare.5665261.v1
title: Additional file 3: Table S3. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: FPKM valuesÂ of 9840 genes. (XLSX 2563 kb)
DOI: 10.6084/m9.figshare.5665258
title: Additional file 12: Table S5. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: IDs, median-centered intensity values and MapMan annotation of k-means and hierarchical clustering subclusters (Additional file 11: Figure S6), and results of BlastN analysis within the subclusters. (XLSX 12681 kb)
DOI: 10.6084/m9.figshare.5665258.v1
title: Additional file 12: Table S5. of A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley

description: IDs, median-centered intensity values and MapMan annotation of k-means and hierarchical clustering subclusters (Additional file 11: Figure S6), and results of BlastN analysis within the subclusters. (XLSX 12681 kb)
DOI: 10.6084/m9.figshare.5665255
title: MOESM2 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 2. Non-canonical splice sites in Nd-1. All occurrences of the different splice site pairs within the first transcript of predicted Nd-1 genes in GeneSet_Nd1_v.1.1 are listed.
DOI: 10.6084/m9.figshare.5665255.v1
title: MOESM2 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 2. Non-canonical splice sites in Nd-1. All occurrences of the different splice site pairs within the first transcript of predicted Nd-1 genes in GeneSet_Nd1_v.1.1 are listed.
DOI: 10.6084/m9.figshare.5665240
title: Additional file 2: Table S2. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: Mapping results. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5665240.v1
title: Additional file 2: Table S2. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: Mapping results. (XLSX 11 kb)