cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2d0g778/7
title: Average coral size used for model simulations

description: Average coral size (m) calculated based on coral colonies from MC 294, MC 297 and MC 344.
DOI: 10.5061/dryad.2sh12/1
title: Reproductive isolation in Mecopoda elongata

description: Mating Experiment: ChirperFemales vs ChirperMales_MatingExperiment + ChirperFemales vs DoubleChirperMales_MatingExperiment, Call Preference Experiment: ChirperCallPreferenceExperiment, Chirper Chirp Rate Preference Experiment: ChirperChripRatePreferenceExperiment, Chirper/Double Chirper Chirp Rate/Chirp Structure Experiment: Chirper-DoubleChirper_ChirpRate-ChirpStructurePreferenceExperiment_1 + Chirper-DoubleChirper_ChirpRate-ChirpStructurePreferenceExperiment_2 + CombinedChirper-DoubleChirper_ChirpRate-ChirpStructurePreferenceExperiment
DOI: 10.5061/dryad.4v57t/1
title: Microsatellite genotypes of marsh and edible frogs

description: Genotype matrix of eight microsatellite markers for 192 edible and 45 marsh frogs sampled in Switzerland and nearby France. Marsh frogs alleles of edible frogs are highlighted. 1: null allele; NA: missing data
DOI: 10.5061/dryad.5164v/1
title: Tseng-et-al-JAE-Museum-Data-dryad

description: This file contains the data used to generate the main results for the museum beetles portion of the paper.  The data for the meta-analysis portion of the paper is available as supplementary materials on the Journal of Animal Ecology website.
DOI: 10.5061/dryad.5bv7p/3
title: qPCR_data

description: This compressed file contains data files and documentation related to quantitative PCR of the fungal ITS1 gene for this study.
DOI: 10.5061/dryad.5vq2h/1
title: Data sets and R script for propensity for sex and diapausing egg hatching fraction

description: The file contains: (1) Raw data from Propensity for sex experiment; (2) Raw data from Diapausing egg hatching fraction experiment and (3) R Script used for the statistical analyses performed.
DOI: 10.5061/dryad.631q1/4
title: UAS-Field plant-scale structural metrics

description: Plant-scale comparison of unmanned aerial system (UAS) structure from motion (SfM) structural metrics and field-based measurements (shrub height, shrub volume, and canopy cover) at two study sites in Idaho, USA.
DOI: 10.5061/dryad.6bj23/1
title: Matsuo_etal_Ecol&Evol2017_Dryad
DOI: 10.5061/dryad.6qg43/1
title: Morphological and flammability traits of NZ tussock grasslands

description: This dataset contains 3 files:

1) Morphological and flammability traits measured at the shoot level for each sample.
2) Morphological traits measured at the leaf level for each subsample.
3) Morphological traits related to moisture content measured for each subsample.
DOI: 10.5061/dryad.723m1/4
title: README
DOI: 10.5061/dryad.7fb7r/4
title: smr.pumas.traps.north

description: Location data for cameras in North grid
DOI: 10.5061/dryad.7p02c/1
title: Embryonic plasticity-raw data

description: Raw data (per replicate) for 23 experiments conducted on anuran embryos from across the United States.
DOI: 10.5061/dryad.7qs13/1
title: FIG_S1_existing_hypotheses

description: Hypotheses of the relationships among Crenicichla species groups based on morphology (a) Ploeg (1991) and molecules (b) López-Fernández et al. (2010), (c) Kullander et al. (2010), (d) Piálek et al. (2012). Representatives of the species groups: (e) Crenicichla lugubris (AUM43158), (f) C. saxatilis (AUM65898), (g) C. wallacii (AUM44460), (h) C. reticulata (AUM48266), (i) C. lacustris (UFRGS13073), the type species: (j) C. macrophthalma (ANSP195888), and (k) Teleocichla monogramma (ANSP194664). Photos: T. monogramma courtesy of Mark Sabaj; all others by EDB.
DOI: 10.5061/dryad.7qs13/2
title: FIG_S2_Landmark_schemes

description: Landmark schemes used to quantify (left) body and (right) lower pharyngeal jaw shape: homologous (red) and sliding (purple) landmarks.
DOI: 10.5061/dryad.7qs13/3
title: Supplementary_Materials_tables_and_Figure_legends

description: Supplementary tables and figure legends. Includes voucher specimen information for the genetic and morphological aspects of the study.
DOI: 10.5061/dryad.7qs13/4
title: FIG_S3_Maximum_Likelihood

description: Concatenated Maximum likelihood Crenicichla phylogenies based on data sets with different proportions of missing data (A-D). Nodal support was assessed by 500 non-parametric bootstrap replicates.
DOI: 10.5061/dryad.7qs13/5
title: FIG_S4_Bayesian_Inference

description: Bayesian inference Crenicichla phylogenies based on data sets with different proportions of missing data (A-D). Nodal support was assessed by 500 non-parametric bootstrap replicates.
DOI: 10.5061/dryad.7qs13/6
title: FIG_S5_SVDquartets

description: Species trees (SVDquartets) Crenicichla phylogenies based on data sets with different proportions of missing data (A-D). Nodal support was assessed by 500 non-parametric bootstrap replicates.
DOI: 10.5061/dryad.7qs13/7
title: crenicichla_min100_concatenated

description: Complete matrix (loci common to all taxa) of concatenated UCE data from pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/8
title: crenicichla_min100_loci

description: Individual UCE loci alignments that are common to all taxa of pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/9
title: crenicichla_min95_concatenated

description: Incomplete 95% matrix (loci common to at least 95% of taxa) of concatenated UCE data from pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.8b905/6
title: Table F-Fig8

description: Structural metrics: it is structural parameters measured on network topologies for three samples in each group. The tables displays the average with the Std. Error.
(a)	The mean cord length, l.
(b)	The mean fractal dimension measured Df.  
(c)	Treeness, ϕ. 
(d)	The gamma index measured on a formed vascular network.
DOI: 10.5061/dryad.8nm16/1
title: Haematological variables under temperature acclimation

description: Values of haematological variables collected from captive zebra finches acclimated either to cold or thermoneutral conditions. Data contains values of haematocrit, haemaglobin, red blood cell count, red blood cell area, body mass and food intake. Exel file.
DOI: 10.5061/dryad.b2v51/2
title: DRYAD_ms.ecography_quad

description: This excel file synthesis all data used for the quadratic analysis. Columns headers are detailed within the manuscript.
DOI: 10.5061/dryad.b8649/1
title: Siganus fuscescens_Microsat_Genotypes_RRGotanco et al 2017

description: Microsatellite genotype data in csv format.  Data collected from 12 microsatellite loci for 343 individuals.  File description in the first row.  Locus names are in the second row.  Individual names are in the first column, followed by alleles.Alleles are coded as fragment sizes, in separate columns.  Missing data are indicated by ‘?.’
DOI: 10.5061/dryad.f0dg5/1
title: Cold tolerance dataset

description: This excel-file contains two sheets. The first has data on cold shock tolerance and the second has data on supercooling point of Pieris napi pupae undergoing diapause or direct development. Column headers contain descriptions of coding system. See main article for more information.
DOI: 10.5061/dryad.f0dg5/2
title: Metabolome dataset

description: This excel sheet contains the whole body metabolome of Pieris napi undergoing direct development or diapause at two temperatures. Values are expressed as nmol mg-1. The first four columns contain descriptive information, each row is a single individual. Missing data (under quantification limit) was replaced with the lowest quantifiable value.  See main article for more information.
DOI: 10.5061/dryad.gf29k/1
title: Ręk.2017.Dataset

description: The file contains data reported in the manuscript with description of variables in headings.
DOI: 10.5061/dryad.mp480/1
title: Coral plastic and disease dataset
DOI: 10.5061/dryad.mp480/2
title: Transect length used to determine reef area
DOI: 10.5061/dryad.mp480/3
title: R Script
DOI: 10.5061/dryad.pc78t/31
title: Figure S1 october 2017

description: Suppl fig
DOI: 10.5061/dryad.pc78t/32
title: Figure S2 october 2017

description: suppl fig
DOI: 10.5061/dryad.pc78t/33
title: Figure S3 october 2017

description: supp fig
DOI: 10.5061/dryad.pc78t/34
title: Figure S4 october 2017

description: supp fig
DOI: 10.5061/dryad.pc78t/35
title: Figure S5 october 2017

description: supp fig
DOI: 10.5061/dryad.pc78t/36
title: Figure S6 october 2017

description: supp fig
DOI: 10.5061/dryad.pc78t/37
title: Figure S7 october 2017

description: supp fig
DOI: 10.5061/dryad.pc78t/38
title: Figure S8 october 2017

description: supp fig
DOI: 10.5061/dryad.pm620/1
title: aphid and mummy counts

description: See detailed description in README file.
DOI: 10.5061/dryad.q659t/1
title: Data of environmental characteristics and brown trout populations in 102 Norwegian hydropower reservoirs

description: The data contains field-collected data of brown trout populations in 102 Norwegian reservoirs with variable environmental characteristics. The brown trout data (i.e. response variables) include estimates of: "Biomass" (grams of fish per 100m2 net per night); "Density" (number of fish per 100m2 net per night); "Mean weight" (mean wet mass in grams); "Mean condition" (mean Fulton's condition factor); and "Mean maturity length" (mean total length of mature females in millimeters).  All abbreviations for different variables (columns) are explained in the paper. Many reservoirs ("Lake") have various names, some including Norwegian letters (æ, ø & å). Hence, we recommend to use coordinate data (EPSG:4326; "decimalLongitude" and "decimalLatitude") and Norwegian national lake ID numbers ("Lake_nr"; managed by the Norwegian Water Resources and Energy Directorate; www.nve.no) to locate the reservoirs. The variables "Year", "Month" and "Day" refer to times when survey fishing was conducted. Lake morphometry data ("A"=surface area, "SD"=shoreline development) is obtained from NVE database. The lake climatic and catchment data ("T"=mean July air temperature, "NDVI"= Normalized Difference Vegetation Index, and "SL"=terrain slope) is obtained and measured as described by Finstad et al. (2014; DOI: 10.1111/ele.12201). Other abbreviations include: "FC"=presence of other fish species (1=absent, 2=present); "GS"=gillnet series (1=Nordic, 2=Jensen); and "ST"=brown trout stocking (0=no stocking, 1=stocking). The water level regulation (WLR) metrics include: ): "WLR_magnitude"= maximum regulation amplitude; "WLR_frequency"=relative proportion of weeks with a sudden rise or drop in water level; and "WLR_duration"=the relative proportion of weeks with exceptionally low water levels.
DOI: 10.5061/dryad.sh45f/1
title: Supplemental Data 11-09-2017

description: Lithology of the Olsen Canyon Section (37°01’02” N, 113°23’22” W) near the City of St. George, Washington County, Utah State
DOI: 10.5061/dryad.sp74b/1
title: Diet sequences data processed

description: Representative sequences for each MOTU
DOI: 10.5061/dryad.sp74b/2
title: Diet data matrix

description: Presence/absence data matrix of bat individuals x MOTUs
DOI: 10.5061/dryad.sp74b/3
title: Bat individuals' data

description: Data about the traits of each bat individual.
DOI: 10.5061/dryad.sq539/1
title: Alpine rangeland quality under simulated climate change

description: The data file contains original data of forage quality. If you have any questions, please contact the correspondence author.
DOI: 10.5061/dryad.tk06g.1
title: Data from: An ecomorphospace for the Ammonoidea
DOI: 10.5061/dryad.tk06g.2
title: Data from: An ecomorphospace for the Ammonoidea
DOI: 10.5061/dryad.tk06g.2/1.2
title: Species list

description: List of species investigated. MB.C. = Museum für Naturkunde, Berlin
DOI: 10.5061/dryad.tk06g.2/2.2
title: Ontogenetic data

description: List of the conch parameters, whorl expansion rate (WER), apertural surface area index (ASAI) and buccal mass area index (BMAI) for all half whorl measurements for each specimen and their PCA values.
DOI: 10.5061/dryad.tk06g.2/3.2
title: Supplementary Fig 1

description: Simple dm/ASarea plot to outline the position of the various studied cross sections. The nine specimens divide into three groups: 1) Forms with a high ASA (*Nautilus*, *Macrocephalites* and in the adult stage *Hammatocyclus*), 2) Forms with a moderate ASA (*Revilloceras* and *Joannites*, *Metalegoceras* in the adult stage) and 3) Forms with low ASA (*Choffatia* and *Sageceras*).
DOI: 10.5061/dryad.tk06g.2/4.2
title: Supplementary Fig 2

description: Simple ASarea/BMAI plot to outline the position of the various studied cross sections. In the nine highlighted specimens, it is clear to see that for a given ASA there can be a range of BMAIs. The disparity in BMAI increases from the hatchling stage through to the adults. In the subadult/adult stages, some specimens possess relatively small buccal apparatus (*Revilloceras* and *Joannites*) restricting them to smaller food items whereas other specimens were capable of eating larger prey (*Nautilus*, *Sageceras*).
DOI: 10.5061/dryad.tk06g.2/5.2
title: Supplementary Fig 3

description: Simple WER/ASAI plot to outline the position of the various studied cross sections. The blue lines indicate the relationship between the ASAI and WER for simple geometric apertural shapes, the three lines from the top represent depressed ellipsoids of decreasing intensity, the fourth line a circle and the bottom two lines compressed ellipsoids.
DOI: 10.5061/dryad.tk06g.2/6.2
title: Supplementary Fig 4

description: Ontogenetic trajectories of the conch width index, umbilical width index and whorl expansion rate, as well as the two new parameters, apertural surface area index and buccal mass area index, of three ammonoid species: A – *Hammatocyclus pollex* Ebbighausen, Korn & Bockwinkel, 2010, specimen MB.C.18601.7 (Early Carboniferous, Gourara, Algeria), B – *R**evilloceras granofalcatum *(Kullmann, 1961),
specimen MB.C.9090.1 (Early Carboniferous, Anti-Atlas, Morocco) and C – *Metalegoceras sundaicum*
(Haniel, 1915), specimen MNHN Paris 1925-16 B7532 (Early Permian, Timor)*.*
DOI: 10.5061/dryad.tk06g.2/7.2
title: Supplementary Fig 5

description: Ontogenetic trajectories of the conch width index, umbilical width index and whorl expansion rate, as well as the two new parameters, apertural surface area index and buccal mass area index, of three ammonoid species: A – *J**oannites cymbiformis *(Wulfen, 1793), specimen MB.C.6352.2 (Late Triassic, Austria), B – *Sageceras haidingeri* (Hauer, 1849), specimen MB.C.6008.4 (Late Triassic, Austria) and C – *Tropites subbullatus *(Hauer, 1849), specimen MB.C.7724 (Late Triassic, Austria).
DOI: 10.5061/dryad.tk06g.2/8.2
title: Supplementary Fig 6

description: Ontogenetic trajectories of the conch width index, umbilical width index and whorl expansion rate, as well as the two new parameters, apertural surface area index and buccal mass area index, of two ammonoid species and a *Nautilus* species: A – *Macrocephalites macrocephalus *(Schlotheim, 1813), specimen MB.C.26518 (Middle Jurassic, Westphalia), B – *Choffatia isabellae* Bonnot et al., 2008, specimen MB.C.26550 (Middle Jurassic, Normandy) and C – *Nautilus pompilius* Linnaeus, 1758, specimen GPI Tübingen 1431-K1.
DOI: 10.5061/dryad.117hh/1
title: Variant calls from 19 Atlantic salmon

description: Variant calls from 19 Atlantic salmon against Solmo salar reference (ICSASG_v2 ) and a BAC contig covering the sdY region (NCBI accession KP898412)
DOI: 10.5061/dryad.23sv1/2
title: CID_mat

description: Clutch initiation dates (arbitrary julian day) for captive female Adelie penguins at Sea World San Diego from 1992 to 2015. Columns represent years, rows represent individuals. These data are used in the hierarchical model in Youngflesh et al. Journal of Animal Ecology.
DOI: 10.5061/dryad.23sv1/3
title: Captive_CID

description: Clutch initiation dates (CID) for female Adelie penguins at Sea World San Diego from 1992 to 2015. Columns are YEAR (year of interest), FEMALE_ID (id number for each female), and J_CID (arbitrary julian day for CID). These data are used to calculate variance and plot CID over time in Youngflesh et al. Journal of Animal Ecology.
DOI: 10.5061/dryad.23sv1/4
title: Wild_CID

description: Clutch initiation dates (CID) for female Adelie penguins at Admiralty Bay, Antarctica (62.2 S, 58.4 W) from 1986 to 2012. Data was collected as part of the U.S. Antarctic Marine Living Resources (AMLR) program at the National Oceanic and Atmospheric Administration (NOAA). Columns are YEAR (year of interest) and J_CID (arbitrary julian day for CID). These data are used to calculate variance and plot CID over time in Youngflesh et al. Journal of Animal Ecology. The AMLR program can be contacted directly concerning these data: jefferson.hinke@noaa.gov.
DOI: 10.5061/dryad.2d0g778/8
title: Proportions of unhealthy and hydroid-colonized branches

description: Proportions of unhealthy and hydroid-colonized branches for every coral colony at MC 294, MC 297 and MC 344.
DOI: 10.5061/dryad.38n0n/1
title: Neonatal cohort India

description: Cohort of neonates born to mothers utilizing prehospital ambulance services within 7 days of birth
DOI: 10.5061/dryad.4t5q5/1
title: Tseng&Flynn_SciAdv_FEA_files_for_Dryad

description: Morphed skull models representing ecological categories or end values. In Strand7 format. README file included in zipped folder.
DOI: 10.5061/dryad.4t5q5/2
title: Tseng&Flynn_SciAdv_GeometricMorphometrics_files_for_Dryad

description: Landmark datasets in txt format, generated by MorphoJ. README file included in zipped folder.
DOI: 10.5061/dryad.4t5q5/3
title: Tseng&Flynn_SciAdv_Mesquite_files_for_Dryad

description: Topology sensitivity analysis files in Mesquite format. For details on data source for each topology and branch length configuration, see publication and supporting information. README file included in zipped folder.
DOI: 10.5061/dryad.6767m/1
title: Pedigree

description: __ ped.txt Table containing the pedigree of the population
_____ animal: focal individual unique identifier
_____ dam: mother of the focal individual
_____ sire: father of the focal individual
DOI: 10.5061/dryad.6767m/4
title: Bash run simulations

description: Bash script to create folders and fill them with simulations with different heritability values
DOI: 10.5061/dryad.6767m/5
title: Bash run simulations 2

description: Bash script to create folders and fill them with simulations with different length of monitoring values
DOI: 10.5061/dryad.6767m/6
title: Phenotypic data

description: __ YearPheno.txt
_____ ID: focal individual unique identifier
_____ animal: duplicate of ID to fit relatedness matrices in animal model
_____ Mother: mother of the focal individual
_____ Year: year of measurement
_____ Sex: Female or male
_____ Age: Juvenile or adult
_____ BMI: Body mass index. Check the publication for details
_____ RJst: Standardized relative Julian day 
_____ RJ2st: Squared Standardized relative Julian day
_____ Phi and PhiZ: survival to the next year (duplicated for historical reasons)
_____ RhoZ: reproduction on the next year
_____ FitnessZ: RhoZ + 2Phi. Check the publication for details
_____ GGImm: proportion of assumed immigrant ancestry used to fit genetic groups. Check the publication for details
_____ BMIst: BMI standardized within years
_____ BMI1 and BMI2: BMI in years of positive or negative selection. Check the publication for details
DOI: 10.5061/dryad.6767m/7
title: RData

description: RData to re-create figures
DOI: 10.5061/dryad.6767m/8
title: ToCreateFiguresAndMainNumbers

description: Code used to create figures and calculate some numbers presented in the manuscript
DOI: 10.5061/dryad.7bq1q/1
title: Megachile sculpturalis records in France

description: Megachile sculpturalis records in France between 2008 and 2016
DOI: 10.5061/dryad.7kh2n/1
title: nt123 data matrix - FASTA

description: FASTA file with the concatenated individual orthologous group alignments (406 total), with 40 taxa. This is the unaltered, original matrix. This matrix is 33.1% complete with 966,888 sites.
DOI: 10.5061/dryad.7qs13/10
title: crenicichla_min95_loci

description: Individual UCE loci alignments that are common to at least 95% of taxa of pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/11
title: crenicichla_min80_concatenated

description: Incomplete 80% matrix (loci common to at least 80% of taxa) of concatenated UCE data from pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/12
title: crenicichla_min80_loci

description: Individual UCE loci alignments that are common to at least 80% of taxa of pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/13
title: crenicichla_min50_concatenated

description: Incomplete 50% matrix (loci common to at least 50% of taxa) of concatenated UCE data from pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7qs13/14
title: crenicichla_min50_loci

description: Individual UCE loci alignments that are common to at least 50% of taxa of pike cichlids of the genus Crenicichla. Data were generated using the UCE Ray-finned Fish (Actinopterygians) 0.5K probe kit from MYcroarray.
DOI: 10.5061/dryad.7vg5fd0/1
title: TABLE 4. Completeness (Cp.) and articulation (Art.) scores for I. duncani specimens from Isisford (following Beardmore et al. (2012); Syme and Salisbury (2014)).

description: Completeness (Cp.) and articulation (Art.) scores for I. duncani specimens from Isisford. As per Beardmore et al. [40], Xp denotes skeletal units that are not visible due to truncation with the edge of the block or blocks missing, and Xh denotes skeletal obscured by matrix or overlying skeletal elements. Beardmore et al. [40] propose that specimens with 3 instances of either Xp or Xh in the dataset should be omitted from further analysis: in this instance, all specimens except the holotype QM F36211 were excluded from further analyses (denoted by ‘--’). The average completeness and articulation for QM F36211 was calculated both with and without the dermal skeletal units: with the dermal skeletal units, compared to a maximum total score of 36 (4 for each of the 9 of 11 units omitting Xp/Xh data); without the dermal skeletal units, compared to a maximum total score of 28 (4 for each of the 7 of 9 units omitting Xp/Xh data). The data was then compared with the trend lines proposed by Beardmore et al. [40] where possible.
DOI: 10.5061/dryad.7vg5fd0/2
title: TABLE 3. NISP, MNE, and MNI of Isisfordia duncani specimens from Isisford.

description: Summary of the Isisfordia duncani fossil elements recovered from the Isisford locality, including the number of identified specimens—where ‘specimens’ refers to the number of bone fragments—recovered per taxon (NISP), minimum number of elements (MNE) which may comprise multiple fragments each, and minimum number of individuals (MNI). We have included totals both without dermal skeletal units (as NISP and MNE), and with dermal skeletal units such as osteoderms included (as NISP inc. ost. and MNE inc. ost.). The relatively high NISP and MNE compared to MNI for I. duncani indicates that the majority of individuals comprise a multitude of articulated and/or closely associated skeletal elements. Approximate size range taken from and estimated using Salisbury et al. [66].