cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1250031
title: Supplementary material to manuscript: Analyzing data citation practices to the Data Citation Index

description: Supplementary material to an analysis on data citation practices based on the Data Citation Index from Thomson Reuters. This database launched in 2012 aims to link data sets and data studies with citation received from the rest of their citation indexes. Funding bodies and research organizations are increasingly demanding the need of researchers to make their scientific data available in a reusable and reproducible manner, aiming to maximize the allocation of funding while providing transparency on the scientific process. The DCI harvests citations to research data from papers indexed in the Web of Knowledge. It relies on the information provided by the data repository as data citation practices are inconsistent or inexistent in many cases. The findings of this study show that data citation practices are far from common in most research fields.. Some differences have been reported on the way researchers cite data: while in the areas of Science and Engineering & Technology data sets were the most cited, in Social Sciences and Arts & Humanities data studies play a greater role. 88.1% of the records have received no citation, but some repositories show very low uncitedness rates. While data citation practices are rare in most fields, they have expanded in disciplines such as Crystallography or Genomics. We conclude by emphasizing the role the DCI may play to encourage consistent and standardized citation of research data which will allow considering its use on following the research process developed by researchers, from data collection to publication.
DOI: 10.6084/m9.figshare.1250065.v2
title: 1000 Backlinks to instagram.com (21-Nov-2014) -- varocarbas.com

description: High quality backlinks to instagram.com. The retrieval process was completed on 21-Nov-2014.
DOI: 10.6084/m9.figshare.1250024
title: How the context matters. Literal and figurative meaning in the embodied language paradigm

description: Accuracy and Reaction times for the validation, Experiment 1 and 2 (see the article)
DOI: 10.6084/m9.figshare.1250065.v4
title: 1000 Backlinks to instagram.com (21-Nov-2014) -- varocarbas.com

description: High quality backlinks to instagram.com. The retrieval process was completed on 21-Nov-2014.
DOI: 10.6084/m9.figshare.1250024.v1
title: How the context matters. Literal and figurative meaning in the embodied language paradigm

description: Accuracy and Reaction times for the validation, Experiment 1 and 2 (see the article)
DOI: 10.6084/m9.figshare.1250065.v3
title: 1000 Backlinks to instagram.com (21-Nov-2014) -- varocarbas.com

description: High quality backlinks to instagram.com. The retrieval process was completed on 21-Nov-2014.
DOI: 10.6084/m9.figshare.1249945
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249946
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249895
title: AMIANTO

description: AMIANTO
DOI: 10.6084/m9.figshare.1249945.v1
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249946.v1
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249881
title: TRAMA DEL AMIANTO

description: TRAMA DEL AMIANTO POR MARIA CARRILLO
DOI: 10.6084/m9.figshare.1249895.v1
title: AMIANTO

description: AMIANTO
DOI: 10.6084/m9.figshare.1249869
title: An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks

description: This publication contains the code and sample datasets to run the workflow described in "An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks" by Saheed Imam, Daniel R. Noguera and Timothy J. Donohue (Plos Comp bio). The workflow enables the reconstruction of TRNs using comparative genomics and gene expression analyses. The files provided here include example data for <em>E. coli</em> to facilitate the use of the workflow for any organsim of interest. See http://dx.doi.org/10.6084/m9.figshare.1279163 for the code without the E. coli dataset included and for future updates.
DOI: 10.6084/m9.figshare.1249867
title: TRAMA DEL AMIANTO

description: COMENTARIOS E INTERROGANTES DEL USO INDISCRIMINADO DEL AMIANTO
DOI: 10.6084/m9.figshare.1249881.v1
title: TRAMA DEL AMIANTO

description: TRAMA DEL AMIANTO POR MARIA CARRILLO
DOI: 10.6084/m9.figshare.1249867.v1
title: TRAMA DEL AMIANTO

description: COMENTARIOS E INTERROGANTES DEL USO INDISCRIMINADO DEL AMIANTO
DOI: 10.6084/m9.figshare.1249839
title: AMIANTO PELIGROSO ASESINO

description: COMENTARIO
DOI: 10.6084/m9.figshare.1249839.v1
title: AMIANTO PELIGROSO ASESINO

description: COMENTARIO
DOI: 10.6084/m9.figshare.1249829
title: Gaussian Job Archive for C5H7F6NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249805
title: A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis

description: Mycobacterium tuberculosis (MTB) is a pathogenic bacterium responsible for 12 million active cases of tuberculosis (TB) worldwide. The complexity and critical regulatory components of MTB pathogenicity are still poorly understood despite extensive research efforts. In this study, we constructed the first systems-scale map of transcription factor (TF) binding sites and their regulatory target proteins in MTB. We constructed FLAG-tagged overexpression constructs for 206 TFs in MTB, used ChIP-seq to identify genome-wide binding events and surveyed global transcriptomic changes for each overexpressed TF. Here we present data for the most comprehensive map of MTB gene regulation to date. We also define elaborate quality control measures, extensive filtering steps, and the gene-level overlap between ChIP-seq and microarray datasets. Further, we describe the use of TF overexpression datasets to validate a global gene regulatory network model of MTB and describe an online source to explore the datasets. Overall, we provide evidence that these datasets are an invaluable regulatory catalogue that can be used to drive a systems understanding of MTB pathogenicity.
DOI: 10.6084/m9.figshare.1249829.v1
title: Gaussian Job Archive for C5H7F6NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249803
title: Gaussian Job Archive for C4H14N4O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249803.v1
title: Gaussian Job Archive for C4H14N4O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1249786
title: TRAMA DEL AMIANTO

description: TRAMA DEL AMIANTO-YANDRI UBILLUS
DOI: 10.6084/m9.figshare.1249786.v1
title: TRAMA DEL AMIANTO

description: TRAMA DEL AMIANTO-YANDRI UBILLUS
DOI: 10.6084/m9.figshare.1249771
title: DOCUMENTAL TRAMA DE AMIANTO

description: TRAMA DEL AMIANTO
DOI: 10.6084/m9.figshare.1249769
title: The PyNE Software Library: Why and How

description: Presentation to ANS Nor Cal section meeting in Oct. 2014 about the open source software library PyNE.
DOI: 10.6084/m9.figshare.1249735
title: Drosophila medulla full connectome

description: This is the drosophila medulla connectome (directed graph, Pajek format) built from the supplementary table 1 from http://www.nature.com/nature/journal/v500/n7461/full/nature12450.html 379 Nodes (neurons), 3193 links, connection strenghts are the number of synapses per neuron pair. <strong>HOW TO BUILD IT</strong> <strong></strong>1) Get list of neurons from: https://openwiki.janelia.org/wiki/display/flyem/Medulla+TEM+Reconstruction file: https://openwiki.janelia.org/wiki/download/attachments/34505478/SWC+Repository+%2528Reconstructed+Medulla+Neurons%2529.zip?version=1&modificationDate=1375912726000 and save it as csv. Replace spaces with "_" (for bash). [Replaced droso_cells.csv file included] 2) Get supplementary table 1 from the article and save it as csv. Replace empty spaces [see droso_connectome.csv file included] 3) Run bash file build_drosophila_connectome.sh so that it writes to file: <em>build_drosophila_connectome.sh 2&gt;&1|tee drosophila_medulla_connectome.net</em> <em><br></em>[The generated output is in the set]
DOI: 10.6084/m9.figshare.1249735.v1
title: Drosophila medulla full connectome

description: This is the drosophila medulla connectome (directed graph, Pajek format) built from the supplementary table 1 from http://www.nature.com/nature/journal/v500/n7461/full/nature12450.html 379 Nodes (neurons), 3193 links, connection strenghts are the number of synapses per neuron pair. <strong>HOW TO BUILD IT</strong> <strong></strong>1) Get list of neurons from: https://openwiki.janelia.org/wiki/display/flyem/Medulla+TEM+Reconstruction file: https://openwiki.janelia.org/wiki/download/attachments/34505478/SWC+Repository+%2528Reconstructed+Medulla+Neurons%2529.zip?version=1&modificationDate=1375912726000 and save it as csv. Replace spaces with "_" (for bash). [Replaced droso_cells.csv file included] 2) Get supplementary table 1 from the article and save it as csv. Replace empty spaces [see droso_connectome.csv file included] 3) Run bash file build_drosophila_connectome.sh so that it writes to file: <em>build_drosophila_connectome.sh 2&gt;&1|tee drosophila_medulla_connectome.net</em> <em><br></em>[The generated output is in the set]
DOI: 10.6084/m9.figshare.1249771.v1
title: DOCUMENTAL TRAMA DE AMIANTO

description: TRAMA DEL AMIANTO
DOI: 10.6084/m9.figshare.1249718
title: CFMT Dataset for Cho et al., 2014

description: This is the data (collected online and in the lab) for the following article: Cho, Sun-Joo, Wilmer, J., Herzmann, G., McGugin, R.W., Fiset, D., Van Gulick, A.E., Ryan, K, & Gauthier, I. (in press). Item Response Theory Analyses of the Cambridge Face Memory Test (CFMT). Psychological Assessment.
DOI: 10.6084/m9.figshare.1249692
title: Length of Twitter messages posted from the UK

description: Data analysed in Alis et al., "Quantifying regional differences in the length of Twitter messages" Fields<br> ------<br>tweet id: retrieve tweet by passing this id to the REST API<br>mlen: length of message, in characters<br>wlen: length of message, in words<br>mratio: proportion of message
DOI: 10.6084/m9.figshare.1249771.v2
title: DOCUMENTAL TRAMA DE AMIANTO

description: TRAMA DEL AMIANTO
DOI: 10.6084/m9.figshare.1249652
title: Test folder

description: This file contains the materials of our controlled experiments: 1- Data and Analysis results 2- Safety analysis Tutorials 3-Tasks instrcutions 4- Per and Post-experiment questionaire 5-Template sheets
DOI: 10.6084/m9.figshare.1249771.v4
title: DOCUMENTAL TRAMA DE AMIANTO

description: TRAMA DEL AMIANTO
DOI: 10.6084/m9.figshare.1249771.v3
title: DOCUMENTAL TRAMA DE AMIANTO

description: TRAMA DEL AMIANTO
DOI: 10.6084/m9.figshare.1249627
title: How many unpublished studies? ClinicalTrials.gov (n = 2614 studies): diabetes | Closed Studies | Interventional Studies | Phase 3, 4 | Search Date: Oct 27, 2014

description: Find out how many unpublished studies following the URL below.
DOI: 10.6084/m9.figshare.1249627.v1
title: How many unpublished studies? ClinicalTrials.gov (n = 2614 studies): diabetes | Closed Studies | Interventional Studies | Phase 3, 4 | Search Date: Oct 27, 2014

description: Find out how many unpublished studies following the URL below.
DOI: 10.6084/m9.figshare.1249652.v1
title: Time Analysis

description: The results of analysis the time between the three safety analysis
DOI: 10.6084/m9.figshare.1249652.v2
title: Time Analysis

description: The results of analysis the time between the three safety analysis
DOI: 10.6084/m9.figshare.1249652.v4
title: Test folder

description: This file contains the materials of our controlled experiments: 1- Data and Analysis results 2- Safety analysis Tutorials 3-Tasks instrcutions 4- Per and Post-experiment questionaire 5-Template sheets
DOI: 10.6084/m9.figshare.1248983
title: SOLS-BDI Microbiomics AD

description: AD for a cluster hire at ASU
DOI: 10.6084/m9.figshare.1249652.v3
title: Experiment_Material

description: This file contains the materials of our controlled experiments: 1- Data and Analysis results 2- Safety analysis Tutorials 3-Tasks instrcutions 4- Per and Post-experiment questionaire 5-Template sheets
DOI: 10.6084/m9.figshare.1248983.v1
title: SOLS-BDI Microbiomics AD

description: AD for a cluster hire at ASU
DOI: 10.6084/m9.figshare.1248943
title: An Introduction to Practical Sequential Inferences via Single-Arm Binary Response Studies Using the binseqtest R Package

description: We review sequential designs, including group sequential and two-stage designs, for testing or estimating a single binary parameter. We use this simple case to introduce ideas common to many sequential designs, which in this case can be explained without explicitly using stochastic processes. We focus on methods provided by our newly developed R package, binseqtest, which exactly bound the Type I error rate of tests and exactly maintain proper coverage of confidence intervals. Within this framework, we review some allowable practical adaptations of the sequential design. We explore issues such as the following: How should the design be modified if no assessment was made at one of the planned sequential stopping times? How should the parameter be estimated if the study needs to be stopped early? What reasons for stopping early are allowed? How should inferences be made when the study is stopped for crossing the boundary, but later information is collected about responses of subjects that had enrolled before the decision to stop but had not responded by that time? Answers to these questions are demonstrated using basic methods that are available in our binseqtest R package. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.1248948
title: Growth signals employ CGGBP1 to suppress transcription of Alu-SINEs

description: CGGBP1 (CGG triplet repeat-binding protein 1) regulates cell proliferation, stress response, cytokinesis, telomeric integrity and transcription. It could affect these processes by modulating target gene expression under different conditions. Identification of CGGBP1-target genes and their regulation could reveal how a transcription regulator affects such diverse cellular processes. Here we describe the mechanisms of differential gene expression regulation by CGGBP1 in quiescent or growing cells. By studying global gene expression patterns and genome-wide DNA-binding patterns of CGGBP1, we show that a possible mechanism through which it affects the expression of RNA Pol II-transcribed genes in trans depends on Alu RNA. We also show that it regulates Alu transcription in cis by binding to Alu promoter. Our results also indicate that potential phosphorylation of CGGBP1 upon growth stimulation facilitates its nuclear retention, Alu-binding and dislodging of RNA Pol III therefrom. These findings provide insights into how Alu transcription is regulated in response to growth signals.
DOI: 10.6084/m9.figshare.1248939
title: Amphibian diversification

description: Data and R scripts used in my tPhD thesis "On the Macroevolution of Antipredator Defence" to investigate defence-associated diversification in amphibians.
DOI: 10.6084/m9.figshare.1248942
title: Spectral Analysis, Chemical Reactivity and First Hyperpolarizability Evaluation of a Novel 1,9–bis(2–Cyano–2–Ethoxycarbonylvinyl)–5–(2–Furyl)–Dipyrromethane: Experimental and Theoretical Approaches

description: In present work, detailed characterization of a newly synthesized compound 1,9–bis(2–cyano–2–ethoxycarbonylvinyl)–5–(2–furyl)–dipyrromethane (<b>3</b>) was performed using spectroscopic measurements and quantum chemical calculations. The nature of the chemical reaction was determined on the basis of calculated thermodynamic parameters. Quantum theory of atoms in molecules has been used to investigate the strength and nature of H–bonding. Electronic descriptors analysis indicates the suitability for the syntheses of heterocycles containing dipyrromethanes and dipyrrin ligands. The computed first hyperpolarizability was found to be 20.88 × 10<sup>−30</sup> esu indicating synthesized molecule to be suitable for nonlinear optical response.
DOI: 10.6084/m9.figshare.1248948.v1
title: Growth signals employ CGGBP1 to suppress transcription of Alu-SINEs

description: CGGBP1 (CGG triplet repeat-binding protein 1) regulates cell proliferation, stress response, cytokinesis, telomeric integrity and transcription. It could affect these processes by modulating target gene expression under different conditions. Identification of CGGBP1-target genes and their regulation could reveal how a transcription regulator affects such diverse cellular processes. Here we describe the mechanisms of differential gene expression regulation by CGGBP1 in quiescent or growing cells. By studying global gene expression patterns and genome-wide DNA-binding patterns of CGGBP1, we show that a possible mechanism through which it affects the expression of RNA Pol II-transcribed genes in trans depends on Alu RNA. We also show that it regulates Alu transcription in cis by binding to Alu promoter. Our results also indicate that potential phosphorylation of CGGBP1 upon growth stimulation facilitates its nuclear retention, Alu-binding and dislodging of RNA Pol III therefrom. These findings provide insights into how Alu transcription is regulated in response to growth signals.
DOI: 10.6084/m9.figshare.1248937
title: Relationship_TempContagion_Empathy

description: relationship between sensitivity to temperature contagion and self reported empathy on BEES asnd Davis IRI
DOI: 10.6084/m9.figshare.1248938
title: Antipredator defences predict diversification rates - data

description: Data to accompany the article 'Antipredator Defences Predict Diversification Rates'. Key to data: NA = missing data; 0 = absence; 1 = presence; 0/1 = polymorphic; ? = uncertain Key to column headings: con = conspicuous coloration; cd = chemical defence; con0 = conspicuous coloration recoded with ambiguous species considered cryptic (conspicuousness absent); con1 = conspicuous coloration recoded with ambiguous species considered conspicuous. In the latter two categories, ambiguous refers to coloration coded as either polymorphic or uncertain in the original coding ('con' column). The 'bin' column is simply an index to enable ordering identical to the tip labels in the phylogenetic tree used in the paper. References from which data were gathered are listed in the supplementary material of the paper
DOI: 10.6084/m9.figshare.1248943.v1
title: An Introduction to Practical Sequential Inferences via Single-Arm Binary Response Studies Using the binseqtest R Package

description: We review sequential designs, including group sequential and two-stage designs, for testing or estimating a single binary parameter. We use this simple case to introduce ideas common to many sequential designs, which in this case can be explained without explicitly using stochastic processes. We focus on methods provided by our newly developed R package, binseqtest, which exactly bound the Type I error rate of tests and exactly maintain proper coverage of confidence intervals. Within this framework, we review some allowable practical adaptations of the sequential design. We explore issues such as the following: How should the design be modified if no assessment was made at one of the planned sequential stopping times? How should the parameter be estimated if the study needs to be stopped early? What reasons for stopping early are allowed? How should inferences be made when the study is stopped for crossing the boundary, but later information is collected about responses of subjects that had enrolled before the decision to stop but had not responded by that time? Answers to these questions are demonstrated using basic methods that are available in our binseqtest R package. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.1248939.v1
title: Amphibian diversification

description: Data and R scripts used in my tPhD thesis "On the Macroevolution of Antipredator Defence" to investigate defence-associated diversification in amphibians.
DOI: 10.6084/m9.figshare.1248942.v1
title: Spectral Analysis, Chemical Reactivity and First Hyperpolarizability Evaluation of a Novel 1,9–bis(2–Cyano–2–Ethoxycarbonylvinyl)–5–(2–Furyl)–Dipyrromethane: Experimental and Theoretical Approaches

description: In present work, detailed characterization of a newly synthesized compound 1,9–bis(2–cyano–2–ethoxycarbonylvinyl)–5–(2–furyl)–dipyrromethane (<b>3</b>) was performed using spectroscopic measurements and quantum chemical calculations. The nature of the chemical reaction was determined on the basis of calculated thermodynamic parameters. Quantum theory of atoms in molecules has been used to investigate the strength and nature of H–bonding. Electronic descriptors analysis indicates the suitability for the syntheses of heterocycles containing dipyrromethanes and dipyrrin ligands. The computed first hyperpolarizability was found to be 20.88 × 10<sup>−30</sup> esu indicating synthesized molecule to be suitable for nonlinear optical response.
DOI: 10.6084/m9.figshare.1248937.v1
title: Relationship_TempContagion_Empathy

description: relationship between sensitivity to temperature contagion and self reported empathy on BEES asnd Davis IRI
DOI: 10.6084/m9.figshare.1248901
title: CAJA OIT - ACIDO ACETICO

description: ACIDO ACETICO - CAJA OIT
DOI: 10.6084/m9.figshare.1248900
title: Threat-related information suggests competence: A possible factor in the spread of rumors

description: Data for studies 1-5 described in our paper, Threat-related information suggests competence: A possible factor in the spread of rumors
DOI: 10.6084/m9.figshare.1248898
title: Read QC Workflow

description: A workflow for QC-ing reads as per Monaghan et al
DOI: 10.6084/m9.figshare.1248901.v1
title: CAJA OIT - ACIDO ACETICO

description: ACIDO ACETICO - CAJA OIT
DOI: 10.6084/m9.figshare.1248890
title: Effect of Environmental Exposure on Locally Produced Opaque Dental Porcelain

description: Abstract of conference paper about opaque dental porcelain.
DOI: 10.6084/m9.figshare.1248893
title: GRR Model for Classification

description: face datasets and handwritten numeral database
DOI: 10.6084/m9.figshare.1248893.v1
title: GRR Model for Classification

description: face datasets and handwritten numeral database
DOI: 10.6084/m9.figshare.1248890.v1
title: Effect of Environmental Exposure on Locally Produced Opaque Dental Porcelain

description: Abstract of conference paper about opaque dental porcelain.
DOI: 10.6084/m9.figshare.1248873
title: Ovarian cancer survival data

description: Anonymized and de-identified data on selected patients with epithelial ovarian cancer with primary surgery at the University Medical Center Hamburg-Eppendorf between 1993 and 2010
DOI: 10.6084/m9.figshare.1248869
title: D-Brane Potentials in the Warped Resolved Conifold and Natural Inflation

description: Talk given at PhD Student Triangle Seminar, Imperial College London.