cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4974033
title: AgRob V21 - ROS1.0 Bag dataset acquired with AgRobModel E in Vineyard

description: This ROS bag was acquired using AgRobModel E (from Laboratory of Robotics and IoT for Smart Precision Agriculture and Forestry from INESC TEC) in a Portuguese Vineyard, and it has data from: LiVOX MID 70 LIDAR IMU Odometry Stored on these topics: <pre>/camera_info 7663 msgs : sensor_msgs/CameraInfo /cmd_vel 6058 msgs : geometry_msgs/Twist /diagnostics 2060 msgs : diagnostic_msgs/DiagnosticArray (3 connections) /gps_mBase/fix 1277 msgs : sensor_msgs/NavSatFix /gps_mBase/fix_velocity 1277 msgs : geometry_msgs/TwistWithCovarianceStamped /gps_mBase/monhw 255 msgs : ublox_msgs/MonHW /gps_mBase/navclock 1277 msgs : ublox_msgs/NavCLOCK /gps_mBase/navheading 1277 msgs : sensor_msgs/Imu /gps_mBase/navposecef 1277 msgs : ublox_msgs/NavPOSECEF /gps_mBase/navpvt 1277 msgs : ublox_msgs/NavPVT /gps_mBase/navrelposned 1277 msgs : ublox_msgs/NavRELPOSNED9 /gps_mBase/navsat 64 msgs : ublox_msgs/NavSAT /gps_mBase/navstatus 1277 msgs : ublox_msgs/NavSTATUS /gps_rover/fix 1037 msgs : sensor_msgs/NavSatFix /gps_rover/fix_velocity 1037 msgs : geometry_msgs/TwistWithCovarianceStamped /gps_rover/monhw 255 msgs : ublox_msgs/MonHW /gps_rover/navclock 1036 msgs : ublox_msgs/NavCLOCK /gps_rover/navheading 1036 msgs : sensor_msgs/Imu /gps_rover/navposecef 1036 msgs : ublox_msgs/NavPOSECEF /gps_rover/navpvt 1037 msgs : ublox_msgs/NavPVT /gps_rover/navrelposned 1036 msgs : ublox_msgs/NavRELPOSNED9 /gps_rover/navsat 51 msgs : ublox_msgs/NavSAT /gps_rover/navstatus 1036 msgs : ublox_msgs/NavSTATUS /gps_rover/rxmrtcm 7169 msgs : ublox_msgs/RxmRTCM /image_raw/compressed 7651 msgs : sensor_msgs/CompressedImage /imu_um7/data 4886 msgs : sensor_msgs/Imu /imu_um7/mag 4886 msgs : geometry_msgs/Vector3Stamped /imu_um7/rpy 4886 msgs : geometry_msgs/Vector3Stamped /imu_um7/temperature 4886 msgs : std_msgs/Float32 /joy 6973 msgs : sensor_msgs/Joy /livox/lidar 2557 msgs : sensor_msgs/PointCloud2 /rosout 8027 msgs : rosgraph_msgs/Log (4 connections) /rosout_agg 8011 msgs : rosgraph_msgs/Log /tf 2556 msgs : tf2_msgs/TFMessage</pre> This was acquired under SCORPION project.
DOI: 10.5281/zenodo.4926233
title: SARS-CoV-2 Spike Structure Vector Analysis Scripts and Molecular dynamics simulation trajectories for the SARS-CoV-2 WT and Mut (K417N+E484K+N501Y) RBDs

description: This entry contains filtered trajectories for both the WT and Mut (K417N+E484K+N501Y) datasets and the scripts used for the vector relationship and Markov modelling work in our paper "Effect of natural mutations of SARS-CoV-2 on spike structure, conformation and antigenicity" posted on bioRxiv March 12th 2021. The VMD scripts can be run from the tcl console after loading VMD and your structure or via the command line using: vmd -dispdev none -e script_name.tcl your_SARS-CoV-2_structure.pdb Residue numbers in these scripts are specific to SARS-CoV-2 and must be numbered in a manner consistent with the the PDB ID 6VXX structure. Analysis of other Coronavirus Spike structures will require modification of the residue selections. Tcl commands for visulizing the vectors in VMD are provided at the bottom of each VMD script. The HTMD.py script commands can be run in an interactive python session to allow for modification of the model and/or testing alternative projections, etc. This requires installation of HTMD (https://software.acellera.com/install-htmd.html). Filtered trajectories for both the WT and Mut (K417N+E484K+N501Y) datasets are available through Globus (https://www.globus.org/) via the following link: https://app.globus.org/file-manager?origin_id=aa7c9c4c-8343-11eb-b799-f57b2d55370d&origin_path=%2F
DOI: 10.5281/zenodo.4926232
title: SARS-CoV-2 Spike Structure Vector Analysis Scripts and Molecular dynamics simulation trajectories for the SARS-CoV-2 WT and Mut (K417N+E484K+N501Y) RBDs

description: This entry contains filtered trajectories for both the WT and Mut (K417N+E484K+N501Y) datasets and the scripts used for the vector relationship and Markov modelling work in our paper "Effect of natural mutations of SARS-CoV-2 on spike structure, conformation and antigenicity" posted on bioRxiv March 12th 2021. The VMD scripts can be run from the tcl console after loading VMD and your structure or via the command line using: vmd -dispdev none -e script_name.tcl your_SARS-CoV-2_structure.pdb Residue numbers in these scripts are specific to SARS-CoV-2 and must be numbered in a manner consistent with the the PDB ID 6VXX structure. Analysis of other Coronavirus Spike structures will require modification of the residue selections. Tcl commands for visulizing the vectors in VMD are provided at the bottom of each VMD script. The HTMD.py script commands can be run in an interactive python session to allow for modification of the model and/or testing alternative projections, etc. This requires installation of HTMD (https://software.acellera.com/install-htmd.html). Filtered trajectories for both the WT and Mut (K417N+E484K+N501Y) datasets are available through Globus (https://www.globus.org/) via the following link: https://app.globus.org/file-manager?origin_id=aa7c9c4c-8343-11eb-b799-f57b2d55370d&origin_path=%2F
DOI: 10.20375/0000-000e-59a3-6
title: cur_exp.csv
DOI: 10.20375/0000-000e-59a4-5
title: cur_exp.sav
DOI: 10.20375/0000-000e-59a5-4
title: DocuDataCollection.pdf
DOI: 10.20375/0000-000e-59a6-3
title: monitoring.csv
DOI: 10.20375/0000-000e-59a7-2
title: MONITORING.SAV
DOI: 10.48320/c4086bbb-9081-464f-99f5-7b9ad6efffd2
title: Social issues in the perception of the Russian population (Public Opinion Polls by the Levada Center)
DOI: 10.6084/m9.figshare.14839722
title: Adipose Tissue: All Parts Is Useful? In Vitro Study About Adipose-Derived Mesenchymal Stem Cell

description: Dataset for article Adipose Tissue: All Parts Is Useful? In Vitro Study About Adipose-Derived Mesenchymal Stem Cell
DOI: 10.6084/m9.figshare.14839722.v1
title: Adipose Tissue: All Parts Is Useful? In Vitro Study About Adipose-Derived Mesenchymal Stem Cell

description: Dataset for article Adipose Tissue: All Parts Is Useful? In Vitro Study About Adipose-Derived Mesenchymal Stem Cell
DOI: 10.6084/m9.figshare.14839707
title: Modelo econométrico del PIB agrícola en México

description: Los datos empleados en el modelo fueron obtenidos de la siguiente manera: las variables de Valor de la producción agrícola (PIBA), Superficie agrícola (SUPA), Superficie agrícola con riego (SUPRA), Superficie agrícola protegida (SUPROT) y Exportaciones agrícolas (EXP), se obtuvieron del Anuario Estadístico de la Producción Agrícola del Servicio de Información Agroalimentaria y Pesquera (SIAP); las variables de Superficie con servicios fitosanitarios (SSANI), Superficie con Asistencia técnica (ASITEC), Superficie sembrada con semilla mejorada (SUPSEM), Superficie fertilizada (FER) y Superficie mecanizada (MAQ), se obtuvieron de los reportes anuales “Uso de tecnología y de servicios en el campo” del SIAP; la variable de Infraestructura carretera (INFRA) se obtuvo de los anuarios estadísticos de la Secretaria de Comunicaciones y Transportes; el tipo de cambio (TER), la Inversión extranjera directa en el sector agrícola (IED) y el Consumo de energía eléctrica (CEE), se obtuvo de los datos abiertos de la FAO; mientras que los datos del salario mínimo (SALMIN), se obtuvieron del Banco de México.<br>
DOI: 10.6084/m9.figshare.14839707.v1
title: Modelo econométrico del PIB agrícola en México

description: Los datos empleados en el modelo fueron obtenidos de la siguiente manera: las variables de Valor de la producción agrícola (PIBA), Superficie agrícola (SUPA), Superficie agrícola con riego (SUPRA), Superficie agrícola protegida (SUPROT) y Exportaciones agrícolas (EXP), se obtuvieron del Anuario Estadístico de la Producción Agrícola del Servicio de Información Agroalimentaria y Pesquera (SIAP); las variables de Superficie con servicios fitosanitarios (SSANI), Superficie con Asistencia técnica (ASITEC), Superficie sembrada con semilla mejorada (SUPSEM), Superficie fertilizada (FER) y Superficie mecanizada (MAQ), se obtuvieron de los reportes anuales “Uso de tecnología y de servicios en el campo” del SIAP; la variable de Infraestructura carretera (INFRA) se obtuvo de los anuarios estadísticos de la Secretaria de Comunicaciones y Transportes; el tipo de cambio (TER), la Inversión extranjera directa en el sector agrícola (IED) y el Consumo de energía eléctrica (CEE), se obtuvo de los datos abiertos de la FAO; mientras que los datos del salario mínimo (SALMIN), se obtuvieron del Banco de México.<br>
DOI: 10.5066/p9jyxe51
title: National Assessment of Oil and Gas Quarter-Mile Cells in Jurassic and Cretaceous Strata of the Gulf Coast, 2010 (Provinces 047, 048 and 049)

description: The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown here as a geographic boundary interpreted, defined, and mapped by the geologists responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. The only exceptions to this are Assessment Units that border the Federal-State water boundary. In these cases, the Federal-State water boundary forms part of the Assessment Unit boundary.
DOI: 10.5281/zenodo.5028270
title: Evaluation of groundwater quality for human consumption and Irrigation in relation to arsenic concentration in flow systems in a semi-arid Mexican region

description: Sumplementary material for Evaluation of groundwater quality for human consumption and Irrigation in relation to arsenic concentration in flow systems in a semi-arid Mexican region
DOI: 10.5281/zenodo.5028269
title: Evaluation of groundwater quality for human consumption and Irrigation in relation to arsenic concentration in flow systems in a semi-arid Mexican region

description: Sumplementary material for Evaluation of groundwater quality for human consumption and Irrigation in relation to arsenic concentration in flow systems in a semi-arid Mexican region
DOI: 10.6073/pasta/9e39a06ddad897c5955827c0d931fd70
title: Annual Maps of Mean Winter Temperature for Eastern North America 1951-2009

description: We developed annual raster maps depicting spatiotemporal variation in mean winter temperature for the purposes of modeling the spread of the hemlock woolly adelgid. The maps are based on the PRISM and WorldClim datasets as described in methods.
DOI: 10.6073/pasta/3568956fcac67350689524ffef1de147
title: Food Web of Sarracenia Purpurea in United States and Canada 1999-2011

description: How food webs are structured and how their structure and dynamics vary through time and space is a central focus of research in community ecology. We documented structural variation in the aquatic food web inhabiting pitcher-shaped leaves of the carnivorous pitcher plant Sarracenia purpurea across the geographic range of the plant (from Florida north to Labrador and west to British Columbia); examined temporal variation in this food web with detailed experiments in Massachusetts and Vermont; experimentally manipulated top-down and bottom-up processes in this food web in Massachusetts; and developed a dynamic simulation model of this food web that incorporates metacommunity dynamics.
DOI: 10.25345/c59r7j
title: MassIVE MSV000087697 - Direct detection and fragmentation of intact New Delhi metallo-beta-lactamases by high resolution mass spectrometry
title: Antibiotic resistance is a global public health threat where improvements in detection and surveillance have the potential to improve clinical diagnostics and treatment. The emergence of bacteria that express the New Dehli metallo-beta-lactamase (NDM) protein are one such threat in a broad group of resistance microorganisms, termed Carbapenem-resistant Enterobacterales. The mechanisms of drug resistance and treatment of different bacteria in this group are equally broad. Therefore, differentiating between and within each is important. In the work presented, we demonstrate the application of high-resolution mass spectrometry for the detection and differentiation of the common NDM protein variants. Using this approach, one can accurately detect single amino acid differences between different variants. This level of resolution is important as different variants have evolved greater resistance to antibiotics over time. Detecting different variants of this resistance mechanism have applications in both the treatment and tracking of the spread of infectious microbes.
DOI: 10.25345/c55z47
title: MassIVE MSV000087698 - Fused in sarcoma regulates DNA replication timing and progression
title: Fused-in-sarcoma (FUS) encodes an RNA-binding protein with diverse roles in transcriptional activation and RNA splicing. While oncogenic fusions of FUS and transcription factor DNA-binding domains are associated with soft tissue sarcomas, dominant mutations in FUS cause amyotrophic lateral sclerosis (ALS). FUS has also been implicated in genome maintenance. However, the underlying mechanisms are unknown. Here, we applied gene editing, functional reconstitution and integrated proteomic and transcriptomics to illuminate roles for FUS in DNA replication and repair. Consistent with a supportive role in DNA double-strand break (DSB) repair FUS deficient cells exhibited subtle alterations in the recruitment and retention of DSB-associated factors, including 53BP1 and BRCA1. FUS-/- cells also exhibited reduced proliferative potential that correlated with reduced replication fork speed, diminished loading of pre-replication complexes, enhanced micronucleus formation, and attenuated expression and splicing of S-phase associated genes. Finally, FUS-deficient cells exhibited genome-wide alterations in DNA replication timing that were reversed upon reeexpression of FUS cDNA. FUS-dependent replication domains were enriched in transcriptionally active chromatin and FUS was required for the timely replication of transcriptionally active DNA. These findings suggest that alterations DNA replication kinetics and programming contribute to genome instability and functional defects in FUS deficient cells.
DOI: 10.17632/y4r4sn85s8.1
title: Health-related quality of life and economic burden of prurigo nodularis: Supplemental Data

description: Supplemental tables for article entitled 'Health-related quality of life and economic burden of prurigo nodularis', published in Journal of American Academy of Dermatology.
DOI: 10.17632/64gtkw9d2h.1
title: finance&fertility

description: The dataset spans from 1960 to 2016 and consists of 174 advanced and developing countries. It is prepared to check how financial development and structure would affect fertility.
DOI: 10.17632/gm62gct6vn.1
title: A quantitative map of human primary microRNA processing sites

description: This zip file contains the unprocessed imaging data (.tif) and corresponding description image files (.pdf) showing the used area by a red box.
DOI: 10.17632/d26tcwdx97.3
title: PAHs and 210Po/210Pb in the Arctic, 2012

description: PAH and 210Po/210Pb data as well as estimation results (export flux & residence time)
DOI: 10.17632/79d8z5b7w3.1
title: Data In Brief Work-Family Conflict (WFC)

description: The survey data collection currently draws as many as 1063 medical representatives in Indonesia. The data collection technique used purposive sampling like have married, and have children under 21 years old living together, by asking questions via a google form. Regression statistics are used to see the relationship between the factors that influence work-family conflict in medical representatives. Characteristics of respondents such as gender, age, length of work, age of children living together, spouse's occupation, education level and working hours which will be seen the correlation with work-family conflict. Furthermore, open questionnaires about work conflicts that disrupt the family and family conflicts that disturb medical representatives to show what problems are often encountered at work and family..
DOI: 10.17632/ydtms99mjm.2
title: Languages and Social Cohesion: Dataset

description: This dataset complements a forthcoming book by Gabriela Meier (University of Exeter, UK) and Simone Smala (University of Queensland, Australia), entitled "Languages and Social Cohesion: A transdisciplinary literature review", published by Routledge Focus Series. As space was limited in the book, the dataset of 285 peer-reviewed articles published in academic journals between 1992 and 2017 (identified systematically following the PRISMA protocol as is explained in the Chapter 3 of the book) is offered here to increase transparency and utility of the work we present, analyse and discuss in the book. It is designed to support researchers and other stakeholders to quickly and easily find literature related to themes and sub-themes, as well as by research design. The project described in the book had the aim to answer the question: In what way are languages associated with social cohesion in academic articles? As can be seen in the concluding chapter of the book (Chapter 5), this transdisciplinary literature review resulted user-friendly tools that can be used to explore the language-and-social cohesion constellation in diverse real-life contexts. The EndNote Library available here presents the result of our systematic literature search and thematic analysis, which formed the basis of our discussion and interpretation of the data. In addition the articles are sorted by research design (qualitative, quantitative, and mixed method research, as well as theory articles, case studies, practice reports and literature reviews). The themes featured in this EndNote Library correspond to the themes listed Appendix 1 and reported in Chapter 4 of the book.
DOI: 10.17632/pv4m8cpft2.1
title: Perceptions of Sexual Rights in Nigeria

description: This data documents the understanding of sexual rights from stakeholders in Nigeria from a survey conducted by the author.
DOI: 10.17632/tkfrmhh5jc.1
title: 2021_0625_PRIDEGBA_amb_Dataset

description: Full dataset of our study.
DOI: 10.17632/y7bppyx64x.1
title: LINF_140015400

description: tc40 antigen-like Leishmania infantum (strain JPCM5)
DOI: 10.17632/tmpdwzcrp3.1
title: LINF_140015600

description: mitoribosomal protein uL16m Leishmania infantum (strain JPCM5)
DOI: 10.17632/77p3ct69ty.1
title: LINF_140015700

description: RNA editing 3' terminal uridylyl transferase 1 | 3'TUTASE | KRET1 Leishmania infantum (strain JPCM5)
DOI: 10.17632/s45xrnk5b7.1
title: LINF_140015800

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/3cwf729p34.5
title: DairyFMBN: a database of studies on the bacterial microbiota of dairy products
DOI: 10.17632/2gxwv4xhwr.1
title: LINF_140016000

description: ADP/ATP mitochondrial carrier-like protein | MCP16 Leishmania infantum (strain JPCM5)
DOI: 10.17632/734559nz2k.1
title: Systems-level immunomonitoring from acute to recovery phase of severe COVID-19

description: Olink and raw mass cytometry data from longitudinal samples of symptomatic patients with positive SARS-CoV-2 PCR test admitted to Helsinki University Hospital, Helsinki Finland. The study includes 37 adults patients diagnosed with COVID-19 with blood samples from acute to recovery phases of the disease.
DOI: 10.17632/yhbzrsbyp5.2
title: Volcanic Vortex Rings acoustic and translation data: Stromboli (Italy) 2018 and 2019

description: High-speed imaging and acoustic measurements of volcanic vortex rings at Stromboli in two days in 2018 and 2019. The .mat files from 20180912_0953_1 to 20190511_1327_1 (yyyymmdd_hhmm_#) include the acoustic data (Pa), sampled at 10 kHz. The axial_position_data.mat file includes two variables: ringrise2018 (81x63) and ringrise2019 (21x30). In the ringrise2018 variable, columns from 1 to 3 (and repeat) are, for each VVR, (1): time (s); (2): vertical position above vent (m); (3): rise velocity (m/s); In the ringrise2019 variable, columns from 1 to 5 (and repeat) are, for each VVR, (1): vertical position above the vent (m); (2): lateral position (m); (3): time (s); (4): measuring line length (m); (5): rise velocity (m/s). The VVR_data.mat file includes two variables: VVR_2018 (21x5) and VVR_2019 (7x5). In both variables, columns from 1 to 5 are: (1): acoustic peak prominence (Pa); (2): acoustic peak width (s); (3): max VVR rise velocity (m/s); (4): VVR-particle delay (s); (5) mean particle velocity in the first 0.1 s (m/s).
DOI: 10.17632/2tn396tm8y.2
title: The role of physical parameterization schemes in capturing the characteristics of extratropical cyclones over the South Pacific Ocean

description: The extratropical cyclone (ETC) of August 2015 in central Chile was investigated using the WRF model to analyze the sensitivity of meteorological variables to different physical parameterization schemes. This study assesses the performance of different physical schemes in the simulation of track, core pressure, mean sea level pressure, wind direction and wind speed associated with ETC over the South Pacific. The analysis uses a total of 36 models, consisting of: WSM3 and WSM6 for microphysics; MM5, ETA and MYNN for surface layer; YSU, MYJ and MYNN3 for planetary boundary layer; KF, BMJ and GF for cumulus; RRTM and RRTMG for longwave radiation; Dudhia and RRTMG for shortwave radiation; and Noah for land surface. Sensitivity experiments indicate that the cumulus, planetary boundary layer and surface layer scheme have a fundamental role in the characterization of ETC track and intensity, while the microphysics scheme plays a secondary role in determining these variables and long- and shortwave radiation do not have a significant impact. The results of this work allow the selection time of the different physical schemes to be optimized according to the ETC characteristics that are to be simulated. This data contain WRF Output, observed and proccesed data associated to wind speed, wind direction, mean sea level pressure, core pressure and track regarding to ETC.