cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zpbnvthp8b.1
title: MCPyV Large T antigen induced atonal homolog 1 (ATOH1) is a lineage-dependency oncogene in Merkel cell carcinoma

description: This data comprises the methylation levels of ATOH1 and the microRNA (miR) -375 in Merkel cell carcinoma (MCC) cell lines. ATOH1 expression is likely to be modulated by differential DNA methylation in the ATOH1 promoter region (&lt;1500 bps before ATG start codon) in MCC cell lines and MCC tissue samples. ATOH1 is a transcriptional activator of miR-375, which is also hypomethylated in classcial MCC cell lines (PeTa, WaGa, MKL-2, MKL-1, UM-MCC52, UM-MCC34, UM-MCC623) compared to variant MCC cell lines (MCC13, MCC26 and UISO). Methylation was measured using the illumina EPIC array. Please see the metadata file for further information.
DOI: 10.5281/zenodo.2654485
title: Indoor Object Detection Dataset

description: We introduce a new fully labeled object detection dataset collected from indoor scenes. This indoor dataset consists of 2213 image frames containing seven classes. In contrast to existing indoor datasets, our dataset includes a variety of background, lighting conditions, occlusion and high inter-class differences.<br>
For detail information, please refer to our paper: 10.1109/EUVIP.2018.8611732
description: If you use this dataset in your research, please cite our paper :
10.1109/EUVIP.2018.8611732
DOI: 10.17632/55349bz87n.1
title: Data for: Media Exposure and Individuals’ Emergency Preparedness Behaviors for Coping with Natural and Human-Made Disasters

description: Media Exposure and Individuals’ Emergency Preparedness Behaviors for Coping with Natural and Human-Made Disasters
DOI: 10.5066/p9ufzwvu
title: Tri-Decadal Global Landsat Orthorectified Single Scenes - ETM+

description: Tri-Decadal Global Landsat Orthorectified single scene data collection consisting of a global set of high-quality, relatively cloud-free orthorectified ETM+ Landsat 7.
DOI: 10.5281/zenodo.2654863
title: Improving zero-shot learning by mitigating the hubness problem

description: Data associated with the paper Improving zero-shot learning by mitigating the hubness problem, proceedings of ICLR 2015 (International Conference on Learning Representations), workshop track.

<strong>Abstract: </strong>The zero-shot paradigm exploits vector-based word representations extracted from text corpora with unsupervised methods to learn general mapping functions from other feature spaces onto word space, where the words associated to the nearest neighbours of the mapped vectors are used as their linguistic labels. We show that the neighbourhoods of the mapped elements are strongly polluted by hubs, vectors that tend to be near a high proportion of items, pushing their correct labels down the neighbour list. After illustrating the problem empirically, we propose a simple method to correct it by taking the proximity distribution of potential neighbours across many mapped vectors into account. We show that this correction leads to consistent improvements in realistic zero-shot experiments in the cross-lingual, image labeling and image retrieval domains.
DOI: 10.5281/zenodo.2654864
title: Improving zero-shot learning by mitigating the hubness problem

description: Data associated with the paper Improving zero-shot learning by mitigating the hubness problem, proceedings of ICLR 2015 (International Conference on Learning Representations), workshop track.

<strong>Abstract: </strong>The zero-shot paradigm exploits vector-based word representations extracted from text corpora with unsupervised methods to learn general mapping functions from other feature spaces onto word space, where the words associated to the nearest neighbours of the mapped vectors are used as their linguistic labels. We show that the neighbourhoods of the mapped elements are strongly polluted by hubs, vectors that tend to be near a high proportion of items, pushing their correct labels down the neighbour list. After illustrating the problem empirically, we propose a simple method to correct it by taking the proximity distribution of potential neighbours across many mapped vectors into account. We show that this correction leads to consistent improvements in realistic zero-shot experiments in the cross-lingual, image labeling and image retrieval domains.
DOI: 10.25345/c51631
title: MassIVE MSV000083736 - Regulation of proteome by the proteasome upon ER stress
title: HeLa cells were with Tunicamycin or Thapsigargin for 8 hours in the presence or absence of MG132 or untreated. Cells were lysed by addition of HEPES 50 mM pH7.9 with 5% SDS. Proteins were precipitated with methanol/chloroforme and the proteins were resolubilized in 8 M Urea and digested with trypsin. The peptides were analyzed on a Thermofisher scientific Q Exactive HFX.
DOI: 10.5255/ukda-sn-853652
title: Enabling carbon markets: carbon accounting, benchmarking and disclosure 2008-2010
DOI: 10.5281/zenodo.2549599
title: Validation of GPM Precipitation Products by Comparison with Ground-Based Parsivel Disdrometers over Jianghuai Region

description: This file provides the disdrometer data and GPM data used in our research, along with some codes used for plots.
DOI: 10.5281/zenodo.2549600
title: Validation of GPM Precipitation Products by Comparison with Ground-Based Parsivel Disdrometers over Jianghuai Region

description: This file provides the disdrometer data and GPM data used in our research, along with some codes used for plots.
DOI: 10.5281/zenodo.2654482
title: PhD_Study2_CVSA_ToninReplication_Dataset

description: Dataset of the second study of my PhD program from a covert visuospatial attention (CVSA) task adapted from Tonin et al., (2012,2013).
description: {"references": ["Tonin et al. (2012). Offline exploration (https://www.ncbi.nlm.nih.gov/pubmed/22832204)", "Tonin et al. (2013). Online implementation (https://www.ncbi.nlm.nih.gov/pubmed/23918205)"]}
DOI: 10.5281/zenodo.2654483
title: PhD_Study2_CVSA_ToninReplication_Dataset

description: Dataset of the second study of my PhD program from a covert visuospatial attention (CVSA) task adapted from Tonin et al., (2012,2013).
description: {"references": ["Tonin et al. (2012). Offline exploration (https://www.ncbi.nlm.nih.gov/pubmed/22832204)", "Tonin et al. (2013). Online implementation (https://www.ncbi.nlm.nih.gov/pubmed/23918205)"]}
DOI: 10.5281/zenodo.2653858
title: Coarse-grained simulations of cholesterol in asymmetric lipid bilayers with varying degrees of lipid chain unsaturation

description: Asymmetric membranes consisting of DOPC, cholesterol, and a lipid with a varying level of unsaturation were simulated at 310 K. The DOPC leaflet consisted of 520 molecules, whereas the other leaflet consisted of either 520 DLiPC with 2 double bonds in both chains, 520 DAPC with 4 double bonds in both chains, or 468 DDPC with 6 double bonds in both chains. These numbers were adjusted to prevent membrane bending. Additionally, a symmetric DOPC membrane of the same size (520+520 lipids) was simulated. All systems also contained 112 molecules (10 mol%) of cholesterol. The Martini force field [1] was used and the membranes were generated using insane [2].

The simulations were run for 50 microseconds using the GROMACS simulation suite [3]. Simulation parameters are found in the common mdp file (note that the temperature varies between simulations).

The upload contains simulation inputs and outputs that allows the replication, extension, or analysis of the simulation data:


	Topology files (top) and molecular definitions (itp)
	Index files (ndx)
	Run parameter files (mdp)
	A run input file (tpr)
	Trajectory file (xtc) written every 1 ns
	Energy file (edr)
	Log file (log)
	Final structure file (gro)
	Continue point file (cpt)


The files are named DOPC_LLLL_CG_CHOLXX_TTT.FFF, where


	LLLL is the type of phospholipid in the non-DOPC leaflet
	CG stands for coarse-grained (All atom data in a separate upload)
	CHOLXX stands for the cholesterol concentration (CHOL10 for 10 mol%)
	TTT is the temperature
	FFF is the tile type (see above)


Note that topologies/index files are the same regardless of temperature, and hence their file names do not have the TTT section.

[1] <strong>DOI: </strong>10.1021/jp071097f

[2] <strong>DOI: </strong>10.1021/acs.jctc.5b00209

[3] <strong>DOI: </strong>10.1016/j.softx.2015.06.001
DOI: 10.5281/zenodo.2653859
title: Coarse-grained simulations of cholesterol in asymmetric lipid bilayers with varying degrees of lipid chain unsaturation

description: Asymmetric membranes consisting of DOPC, cholesterol, and a lipid with a varying level of unsaturation were simulated at 310 K. The DOPC leaflet consisted of 520 molecules, whereas the other leaflet consisted of either 520 DLiPC with 2 double bonds in both chains, 520 DAPC with 4 double bonds in both chains, or 468 DDPC with 6 double bonds in both chains. These numbers were adjusted to prevent membrane bending. Additionally, a symmetric DOPC membrane of the same size (520+520 lipids) was simulated. All systems also contained 112 molecules (10 mol%) of cholesterol. The Martini force field [1] was used and the membranes were generated using insane [2].

The simulations were run for 50 microseconds using the GROMACS simulation suite [3]. Simulation parameters are found in the common mdp file (note that the temperature varies between simulations).

The upload contains simulation inputs and outputs that allows the replication, extension, or analysis of the simulation data:


	Topology files (top) and molecular definitions (itp)
	Index files (ndx)
	Run parameter files (mdp)
	A run input file (tpr)
	Trajectory file (xtc) written every 1 ns
	Energy file (edr)
	Log file (log)
	Final structure file (gro)
	Continue point file (cpt)


The files are named DOPC_LLLL_CG_CHOLXX_TTT.FFF, where


	LLLL is the type of phospholipid in the non-DOPC leaflet
	CG stands for coarse-grained (All atom data in a separate upload)
	CHOLXX stands for the cholesterol concentration (CHOL10 for 10 mol%)
	TTT is the temperature
	FFF is the tile type (see above)


Note that topologies/index files are the same regardless of temperature, and hence their file names do not have the TTT section.

[1] <strong>DOI: </strong>10.1021/jp071097f

[2] <strong>DOI: </strong>10.1021/acs.jctc.5b00209

[3] <strong>DOI: </strong>10.1016/j.softx.2015.06.001
DOI: 10.17632/j7n356bdwn.1
title: Data for: Neoproterozoic I-type and highly fractionated A-type granites in Yili Block, Central Asian Orogenic Belt: petrogenesis and tectonic implications

description: systematic whole-rock geochemistry, Sr-Nd-Hf isotopes and U-Pb geochronology studies of the newly identified Neoproterozoic granitic plutons from the southern Yili Block
DOI: 10.5519/qd.7225nwwo
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/d9xmjgn9g9.1
title: Data for: Subways and the Labor Force Participation of Females: The Case of Daejeon, Korea

description: Data from Economically Active Population Survey from Statistics Korea and its regression programs. Both data and command files are of Stata format.
DOI: 10.7910/dvn/5slynz
title: Meteorological data for the study site

description: Meteorological data (rainfall and temperature) useful in relating growth and productivity to influence of weather variability
DOI: 10.7910/dvn/frvhox
title: Phenology scores

description: Leafing phenology (leaf flush and fall) scores were recorded for the period between Dec 2012 and March 2016
DOI: 10.7910/dvn/klg19f
title: Maize yield 2015_2016 short rains

description: Maize productivity was measured adjacent and away from tree rows to determine influence of trees on crop productivity
DOI: 10.7910/dvn/rsrjg9
title: Maize yield for 2012_2013 and 2013_2014 short rains

description: Maize productivity before tree influence was recorded to determine other factors contributing to yield variability (rainfall and soil variability)
DOI: 10.7910/dvn/f1zlcu
title: Plot soil nutrient analyzed data

description: Pooled samples from plots used to characterize soil nutrient status before introduction of agroforestry treatments
DOI: 10.7910/dvn/vxolfj
title: Tree height and basal diameter

description: Tree height and basal diameter measurements were taken for the period between Dec 2012 and March 2016 to show growth trends
DOI: 10.7910/dvn/zyw99c
title: Soil profile pit characterization

description: Profile pits were dug and soil profiling done to classify the dominant soil types and their properties including pH, soil nutrients and calcuim exchange capacity (CEC)
DOI: 10.5066/f7dz06h6
title: Data Rease for "Isotopic constraints on middle Pleistocene cave evolution, paleohydrologic flow, and environmental conditions from Fitton Cave speleothems, Buffalo National River, Arkansas"

description: Data release for "Isotopic constraints on middle Pleistocene cave evolution, paleohydrologic flow, and environmental conditions from Fitton Cave speleothems, Buffalo National River, Arkansas". Extended abstract for the 2017 Karst Interest Group meeting. Includes sample information, U-Th isotope compositions, calculated U-series (230Th/U) ages and initial 234U/238U activity ratios, Sr isotopic compositions, and stable isotopes of C and O for middle Pleistocene flowstones and stalagmites from Fitton Cave, north-central Arkansas.
DOI: 10.5281/zenodo.2653917
title: Surface Type Classification for Autonomous Robot Indoor Navigation - Dataset

description: Surface Type Recognition with Inertial Measurement Unit (IMU).

The dataset contains time series samples with 10 features each, related to orientation, velocity and acceleration. Each time series (of lenght 128) includes its corresponding surface type annotation.

The data has been also divided in groups for easier cross-validation (80 groups present)

A total of 9 different surface types are present in the dataset.

"X_data.npy" contains the time series samples of dimension 7626x10x128<br>
"label.npy" contains the label information for each sample (dimension 7626x1)<br>
"groups.npy" contains the group information for each sample (dimension 7626x1)<br>
"details.csv" contains for each sample the group information and the corresponding label
DOI: 10.5281/zenodo.2653918
title: Surface Type Classification for Autonomous Robot Indoor Navigation - Dataset

description: Surface Type Recognition with Inertial Measurement Unit (IMU).

The dataset contains time series samples with 10 features each, related to orientation, velocity and acceleration. Each time series (of lenght 128) includes its corresponding surface type annotation.

The data has been also divided in groups for easier cross-validation (80 groups present)

A total of 9 different surface types are present in the dataset.

"X_data.npy" contains the time series samples of dimension 7626x10x128<br>
"label.npy" contains the label information for each sample (dimension 7626x1)<br>
"groups.npy" contains the group information for each sample (dimension 7626x1)<br>
"details.csv" contains for each sample the group information and the corresponding label
DOI: 10.5281/zenodo.2654552
title: Data - The Benefits of Neurofeedback Training for Alpha Enhancement and Cognitive Performance - a Single-Blind, Sham-Feedback Study Using a Low-Prized EEG Device

description: This data set includes the minimal data set, which was used to obtain the results in Naas, Rodrigues, Knirsch, & Sonderegger (2019, doi: http://dx.doi.org/10.1101/527598).
DOI: 10.5281/zenodo.2654551
title: Data - The Benefits of Neurofeedback Training for Alpha Enhancement and Cognitive Performance - a Single-Blind, Sham-Feedback Study Using a Low-Prized EEG Device

description: This data set includes the minimal data set, which was used to obtain the results in Naas, Rodrigues, Knirsch, & Sonderegger (2019, doi: http://dx.doi.org/10.1101/527598).
DOI: 10.5255/ukda-sn-853653
title: Adaptation and climate-resilient development 1980-2008
DOI: 10.17632/bpmpjpnd8g.1
title: Data for: Node importance ranking in complex networks based on Multi-Criteria Decision-Making

description: The research data file includes data and MATLAB codes, the data covers the four actual networks and calculation results, and the codes cover Multi-Criteria Decision-Making(EW-TOPSIS), frequency comparation and SI model.
DOI: 10.21952/wtr/1506940
title: Geochemical exports to river from the intrameander hyporheic zone under transient hydrologic conditions, Water Resources Research: Dataset

description: To understand how redox processes influence carbon, nitrogen, and iron cycling within the intrameander hyporheic zone, we developed a biotic and abiotic reaction network and incorporated it into the reactive transport simulator PFLOTRAN. Two dimensional reactive flow and transport simulations were performed (1) to evaluate how transient hydrological conditions control the lateral redox zonation within an intrameander region of the East River in Colorado and (2) to quantify the impact of a single meander on subsurface exports of carbon and other geochemical species to the river. This data package includes simulated hydrologic and geochemical data from 23 Oct 2015 to 22 Oct 2016.
DOI: 10.21952/wtr/1506942
title: The East River, Colorado, Watershed: A Mountainous Community Testbed for Improving Predictive Understanding of Multiscale Hydrological–Biogeochemical Dynamics: Dataset

description: This dataset contains snow water, precipitation, and discharge data collected from the East River watershed. This provides insight as to how the watershed works as a system and responds to hydrological perturbations.
DOI: 10.14469/hpc/5591
title: Houk TS2 Def2-TZVPP gas phase G=-804.661435

description: Gaussian Calculation
DOI: 10.5281/zenodo.2653637
title: Biochar NET-2-U-2. Negative Emission Technologies are nice to the environment part two.

description: Stable Isotope Data of the citizen science project "Biochar NET-2-U-2".
DOI: 10.5281/zenodo.2653638
title: Biochar NET-2-U-2. Negative Emission Technologies are nice to the environment part two.

description: Stable Isotope Data of the citizen science project "Biochar NET-2-U-2".
DOI: 10.5281/zenodo.2653620
title: Biochar NET-2-U. Negative Emission Technologies are nice to the environment.

description: Stable Isotope Data of the citizen science project "Biochar NET-2-U".
DOI: 10.5281/zenodo.2653621
title: Biochar NET-2-U. Negative Emission Technologies are nice to the environment.

description: Stable Isotope Data of the citizen science project "Biochar NET-2-U".
DOI: 10.5063/f11g0jjc
title: Gut microbiome of pre-adolescent children. Location- Guangzhou, Penang and Kelantan.

description: The Southern Chinese populations are compared, specifically the children of Guangzhou City (China), Penang City (west coast Malaysia) and Kelantan City (east coast Malaysia). These Chinese people have similar ancestry thus it would allow us to delineate the effect of diet and ethnicity on gut microbiota composition. For comparison, the Penang and Kelantan Malay (race) children were also included. Weighted beta diversity, Unweighted beta diversity, Relative abundance of major genera, Foods frequency questionnaires were uploaded.
DOI: 10.5258/soton/d0900
title: Dataset for LES and RANS for turbulent flow over arrays of wall-mounted obstacles, Flow Turbulence and Combustion

description: Dataset supporting paper Xie, Z-T, Castro, IP (2006) LES and RANS for turbulent flow over arrays of wall-mounted obstacles, Flow Turbulence and Combustion, 76(3), 291-312, DOI: 10.1007/s10494-006-9018-6
DOI: 10.5281/zenodo.2653796
title: Single Batching Machine Problem Instances from AS/RS

description: The following instances are originally presented in the working paper "Logic-based Benders decomposition for scheduling a batching machine" written by Emde, Simon, Polten, Lukas, and Gendreau, Michel.

The data corrospond to 540 instances each in its own file. Each file is structured as follows:

The first line contains: the number of jobs, the number of batches and the maximum batch size

Then there follows a line for each job containing first the processing time and then the deadline.

Then a line with the number of the following precedence constraints.

Then the lines for each precedence constraints, where the first job has to precede the second job. Note that the job are numbered starting from 0.

Then a line with the number of incompatibilites.

Then the lines for each incompatibility, containing two numbers, corresponding to a pair of jobs, that cannot be packed into the same batch.

All numbers in the same line are seperated by spaces and all numbers are integers.
DOI: 10.5281/zenodo.2654889
title: PhD_Study2_CVSA_ToninReplication_Original_EEGDataset

description: The original dataset from ENOBIO system of the second study of my PhD program from a covert visuospatial attention (CVSA) task adapted from Tonin et al., (2012,2013). The dataset includes a 5min recording to calculate the Individual Alpha Frequency (IAF) of each participant and the
description: {"references": ["Tonin et al. (2012). Offline exploration (https://www.ncbi.nlm.nih.gov/pubmed/22832204)", "Tonin et al. (2013). Online implementation (https://www.ncbi.nlm.nih.gov/pubmed/23918205)"]}
DOI: 10.5281/zenodo.2654890
title: PhD_Study2_CVSA_ToninReplication_Original_EEGDataset

description: The original dataset from ENOBIO system of the second study of my PhD program from a covert visuospatial attention (CVSA) task adapted from Tonin et al., (2012,2013). The dataset includes a 5min recording to calculate the Individual Alpha Frequency (IAF) of each participant and the
description: {"references": ["Tonin et al. (2012). Offline exploration (https://www.ncbi.nlm.nih.gov/pubmed/22832204)", "Tonin et al. (2013). Online implementation (https://www.ncbi.nlm.nih.gov/pubmed/23918205)"]}
DOI: 10.17632/xz5mh6w4ny.1
title: Data for: Kinetics of sol-to-gel transition in irreversible particulate systems

description: Time-evolution of the aggregate mass distribution for diffusion-limited cluster-cluster aggregation systems with monomer volume fraction (f_vm) = 0.001, 0.005, 0.01, 0.02, 0.05, and 0.1.
DOI: 10.5066/p906h1nh
title: Plague positive mouse fleas on mice prior to plague outbreaks in black-tailed and white-tailed prairie dogs

description: In 2013, a large blinded, paired placebo-controlled field trial for the prairie dog oral sylvatic plague vaccine started in the Western US. On 17 paired plots, vaccine and placebo plots, small rodents were trapped annually for 3-5 consecutive nights (when weather allowed) and high elevation Utah plots where plague was active were more frequently trapped in 2014 and 2015. In the dataset the prevalence of flea infestation was recorded for the first annual summer sampling, it was summarized for all small rodent species caught and deer mice (Peromyscus maniculatus). Infestations were either for all flea species collected or for Aetheca wagneri only (our most abundant flea species). We used this data to assess if plague (Y. pestis) presence increased the prevalence of flea infestations on small rodents and deer mice. Fleas were collected after animals were anesthetized with isoflurane.
DOI: 10.5066/p90mvn4r
title: Tri-Decadal Global Landsat Orthorectified Single Scenes - ETM+ Pan-Sharpened

description: Tri-Decadal Global Landsat Orthorectified single scene data collection consisting of a global set of high-quality, relatively cloud-free orthorectified ETM+ Pan-Sharpened Landsat 7.
DOI: 10.5066/p9l6umcc
title: Tri-Decadal Global Landsat Orthorectified Single Scenes - Systematic Correction (Level 1G)

description: Tri-Decadal Global Landsat Orthorectified single scene data collection consisting of a global set of high-quality, relatively cloud-free orthorectified Systematic Correction (Level 1G) Landsat 7.
DOI: 10.18739/a2pz51m1w
title: WArming and irRadiance Measurement (WARM) buoys deployed in Beaufort Shelf and Canada Basin, Arctic Ocean. 2017
DOI: 10.5519/qd.hesuu1b7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (64 records)