cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.v527h4
title: FAIRsharing record for: Center for Expanded Data Annotation and Retrieval Workbench
title: CEDAR Workbench

description: This FAIRsharing record describes:  The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets. 
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.86be21
title: FAIRsharing record for: Panzea
title: Panzea

description: This FAIRsharing record describes:  Panzea provides information on the connection between phenotypes and genotypes of complex traits in maize and its wild relative, teosinte, and specifically in how rare genetic variations contribute to overall plant function.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.cug0cv
title: FAIRsharing record for: DBpedia
title: DBpedia

description: This FAIRsharing record describes:  DBpedia is a crowd-sourced community effort to extract structured content from the information created in various Wikimedia projects. This structured information resembles an open knowledge graph (OKG).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zprtfg
title: FAIRsharing record for: Agronomic Linked Data
title: AgroLD

description: This FAIRsharing record describes:  The Agronomic Linked Data (AgroLD) is a knowledge-based system relying on Semantic Web technologies and exploiting standard domain ontologies, which integrates data about plant species of high interest for the plant science community. AgroLD is an RDF knowledge base of 100M triples created by annotating and integrating more than 50 datasets from 10 data sources and linked using 10 ontologies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zs8uwa
title: FAIRsharing record for: MetaSRA
title: MetaSRA

description: This FAIRsharing record describes:  MetaSRA is a database of normalized SRA human sample-specific metadata following a schema inspired by the metadata organization of the ENCODE project. This schema involves mapping samples to terms in biomedical ontologies, labeling each sample with a sample-type category, and extracting real-valued properties.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.sbiksf
title: FAIRsharing record for: Duke Research Data Repository
title: Duke RDR

description: This FAIRsharing record describes:  The Research Data Repository is a service of the Duke University Libraries that provides curation, access, and preservation of research data produced by the Duke community. The Duke Research Data Repository accepts data, documentation, software, and other code related to the teaching and research mission of Duke University, including data linked to a publication, research project, and/or class projects. Data deposit is open to all members of the Duke Community with a valid netid. All data are openly accessible for direct download. All data go through a curation process to help ensure data are well described, in a structure and format that supports long-term preservation, and generally meet the FAIR Guiding Principles for data (i.e., Findable, Accessible, Interoperable, and Reusable). All data and documentation are openly accessible for download unless under embargo.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.6mmhzp
title: FAIRsharing record for: rPredictor
title: rPredictor

description: This FAIRsharing record describes:  rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.e4abce
title: FAIRsharing record for: PrimesDB
title: PrimesDB

description: This FAIRsharing record describes:  PRIMESDB is a systems biology platform that is being developed to enable the collection, integration and analysis of state-of-the-art genomics, proteomics and mathematical modelling data being generated by the PRIMES project. PRIMES is investigating the role of protein interaction machines in oncogenic signalling with a particular focus on the EGFR network. PRIMESDB provides a centralised knowledgebase and analysis platform for cancer protein interaction networks.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.v52eqe
title: FAIRsharing record for: PolyASite
title: PolyASite

description: This FAIRsharing record describes:  Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isoforms with different terminal exons, which in turn determine the fate of the RNA and the encoded protein. APA has thus been implicated in the regulation of cell proliferation, differentiation and disease development. PolyASite is a portal to the curated set of poly(A) sites inferred from publicly available 3’ end sequencing datasets. It allows efficient finding, exploration and export of poly(A) sites in several organisms. In constructing our poly(A) site atlas, we applied uniform quality measures, including the flagging of putative internal priming sites, to input datasets originating from different 3’ end sequencing techniques, cell types or tissues. Through integrated processing of all data, we identified and clustered sites that are closely spaced and share polyadenylation signals, as these are likely the result of stochastic variations in processing. For each cluster, we identified the representative - most frequently processed - site and estimated the relative use in the transcriptome across all samples. While other existing alternative polyadenylation databases rely on a single experimental method, or on poly(A) site estimation from RNA-seq data, PolyASite is built on data from several 3’ end sequencing techniques. This allows a broader coverage of cell types and poly(A) sites to support further genomics studies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.1a283d
title: FAIRsharing record for: Comprehensive R Archive Network
title: CRAN

description: This FAIRsharing record describes:  CRAN is a network of ftp and web servers around the world that store identical, up-to-date, versions of code and documentation for R.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.uxwz3f
title: FAIRsharing record for: LocustMine
title: LocustMine

description: This FAIRsharing record describes:  An integrated Omics data warehouse for Locust, Locusta migratoria.

description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2cw3hu
title: FAIRsharing record for: BonaRes Repository
title: BonaRes Rep

description: This FAIRsharing record describes:  The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.n4a3pj
title: FAIRsharing record for: BBMRI-ERIC CRC-Cohort
title: CRC-Cohort

description: This FAIRsharing record describes:  The colorectal cancer cohort (CRC-Cohort) is developed within the EU-funded project ADOPT BBMRI-ERIC (H2020) as a use case for piloting access to European biobanks. The CRC-Cohort is developed by BBMRI-ERIC, its National Nodes and BBMRI-ERIC partner biobanks, and it will become a permanent asset of the BBMRI-ERIC infrastructure after the end of the ADOPT project. The CRC-Cohort collection is a joint long-term European endeavor, which enables existing, well-established biobanks to connect with BBMRI-ERIC and obtain increased recognition and visibility along with new users and data. The CRC-Cohort is expected to enable high-quality research and innovation to improve colorectal cancer treatment. The cohort should enable a large spectrum of different types of research and is therefore not restricted to any specific research question. The procedures and IT tools developed within the CRC-Cohort are expected to be reusable for similar future efforts on different disease entities implemented using BBMRI-ERIC as an infrastructure.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.q9vuym
title: FAIRsharing record for: BBMRI-ERIC Directory
title: null

description: This FAIRsharing record describes:  The BBMRI-ERIC Directory is a tool to share aggregate information about biobanks across Europe. The Directory welcomes new biobanks to join and publish information about themselves, including their contact information in the directory. The BBMRI-ERIC Directory can help researchers find relevant biobanks, get their contact information and identify appropriate infrastructure for the storage of samples for research purposes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ckg0bl
title: FAIRsharing record for: NERC Vocabulary Server
title: NVS

description: This FAIRsharing record describes:  The NERC Vocabulary Server provides access to standardised lists of terms and taxonomies related to a wide range of concepts which are used to facilitate data markup, interoperability and discovery in the marine and associated earth science domains. Some of these vocabularies are totally managed by BODC, others are managed by BODC on behalf of other organisations, while some are owned and, when relevant, managed by external governance authorities.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.dofq7p
title: FAIRsharing record for: Cyclebase
title: Cyclebase

description: This FAIRsharing record describes:  Cyclebase is a database to visualize and download results from genome-wide cell-cycle-related experiments. In addition to genome annotation, Cyclebase also provides mRNA data, protein expression data, and integrated cell-cycle phenotype information from high-content screens and model organism databases.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.qgmkai
title: FAIRsharing record for: DNA Modification Database
title: DNAmod

description: This FAIRsharing record describes:  DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.yokiqs
title: FAIRsharing record for: Iowa State University's DataShare
title: ISU DataShare

description: This FAIRsharing record describes:  Iowa State University’s DataShare is an open access repository for sharing, publishing, and archiving research data created by Iowa State University scholars and researchers.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.mkl9rr
title: FAIRsharing record for: Ontology Lookup Service
title: OLS

description: This FAIRsharing record describes:  The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. You can browse the ontologies through the website as well as programmatically via the OLS API. In 2023 OLS was updated to scale better and with a new user interface. OLS is used within life sciences but also in the fields of chemistry and engineering. Code is available under an Apache 2.0 licence.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ps2p8c
title: FAIRsharing record for: UNC Dataverse
title: UNC Dataverse

description: This FAIRsharing record describes:  UNC Dataverse is a research data repository hosted by the Research Data Management Core at the University of North Carolina at Chapel Hill (UNC). UNC Dataverse is an open access repository that accepts data deposits from UNC-affiliated researchers, research groups, institutions, journals, and other entities from all disciplinary domains.  UNC Dataverse offers value-added features that support archiving, discovery, and sharing of research data that align with FAIR principles for findable, accessible, interoperable, reusable data.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.cflglo
title: FAIRsharing record for: Chickspress
title: Chickspress

description: This FAIRsharing record describes:  Chickspress is a gene expression database for chicken tissues. Chickspress incorporates both NCBI and Ensembl gene models and links these gene sets with experimental gene expression data and QTL information. By linking gene models from both NCBI and Ensembl gene prediction pipelines, researchers can compare gene models from each of these prediction workflows to available experimental data. We use Chickspress data to show the differences between these gene annotation pipelines. Chickspress also provides rapid search, visualization and download capacity for chicken gene sets based upon tissue type, developmental stage and experiment type. Chickspress includes a core set of Red Jungle Fowl RNA and peptide data collected across multiple tissues from both male and female birds and public expression data sets.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fnks1a
title: FAIRsharing record for: Drug Database for Inborn Errors of Metabolism
title: DDIEM

description: This FAIRsharing record describes:  DDIEM - Drug Database for inborn errors of metabolism is a database on therapeutic strategies for inborn errors of metabolism. These strategies are classified by mechanism and outcome in DDIEM ontology. DDIEM uses this ontology to categorize the experimental treatments that have been proposed or applied. The database includes descriptions of the phenotypes addressed by the treatment and drugs participating in treatment and procedures.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.vxoflf
title: FAIRsharing record for: Domain-centric GO
title: dcGO

description: This FAIRsharing record describes:  Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.bnluyq
title: FAIRsharing record for: Plant Genome Integrative Explorer
title: PlantGenIE

description: This FAIRsharing record describes:  The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis and few more plant species. The PlantGenIE platform is based on the GenIE-Sys ( Genome Integrative Explorer System).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.n0nnxm
title: FAIRsharing record for: eCommons
title: eCommons

description: This FAIRsharing record describes:  eCommons is a service of the Cornell University Library that provides long-term access to a broad range of Cornell-related digital content of enduring value. Content types include: pre- and post-publication papers, technical reports, theses and dissertations, books, lectures and presentations, datasets, digital departmental newsletters, administrative reports, compilations of University data, and meeting agendas and minutes. Content produced by others but of research and/or teaching value may also be appropriate for eCommons. Such material is normally solicited, collected, or identified by Cornell faculty, researchers, staff, and students, who then arrange all necessary clearances needed to deposit the material. Examples of such content include: datasets, electronic books and multimedia, presentations given at Cornell events, digitized research materials.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.