cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5065/d6kp808q
title: HLY-02-01 ADCP Data (10-min Averages). Version 1.0

description: The United States Coast Guard Cutter (USCGC) Healy contains a 75-kHz phased-array Acoustic Doppler Current Profiler (ADCP) (Ocean Surveyor) mounted under the hull to transmit and receive echos of acoustic pulses from which to estimate vertical profiles of horizontal currents. Attitude information such as heading, pitch, and roll is provided by an Ashtech ADU2-3DGPS receiver while position data are provided by a Trimble Centurion p-code DGPS system. These data streams provide earth-referenced absolute horizontal currents and their vertical variations from about 20-m below the surface to the bottom or about 400-m depth. These data are 10 minute averages.
DOI: 10.25346/s6eecgix/cjc8uo
title: msXV_128r_0_ring.jpg
DOI: 10.25346/s6eecgix/jbi3y9
title: msXV_128r.jpg
DOI: 10.25346/s6eecgix/pnepen
title: msXV_108v_65_48.tif
DOI: 10.25346/s6eecgix/abcrdv
title: msXV_108v_65_47.tif
DOI: 10.25346/s6eecgix/w2et4f
title: msXV_108v_65_46.tif
DOI: 10.25346/s6eecgix/skcfkf
title: msXV_108v_65_45.tif
DOI: 10.25346/s6eecgix/j8nvkk
title: msXV_108v_65_44.tif
DOI: 10.6084/m9.figshare.30252058
title: Direct bonding and debonding of two-dimensional semiconductors

description: Raman spectra, XRD scan, SHG data of bonding-debonding bilayer 2D semiconductors, and electronic performance of FET devices based on monolayer MoS<sub>2</sub> directly bonded onto HfO<sub>2</sub> substrate.
DOI: 10.6084/m9.figshare.30252058.v1
title: Direct bonding and debonding of two-dimensional semiconductors

description: Raman spectra, XRD scan, SHG data of bonding-debonding bilayer 2D semiconductors, and electronic performance of FET devices based on monolayer MoS<sub>2</sub> directly bonded onto HfO<sub>2</sub> substrate.
DOI: 10.25346/s6eecgix/oqrap4
title: msXV_108v_65_43.tif
DOI: 10.25346/s6eecgix/naw0pd
title: msXV_108v_65_42.tif
DOI: 10.5065/d6fx77j0
title: Ice Concentration - Circumarctic. Version 1.0

description: This dataset consists of daily Naval Ice Center (NIC) Hybrid Total Ice Concentration plots of the Arctic Ocean. Images are in .png format.
DOI: 10.25346/s6eecgix/4ahxu1
title: msXV_108v_65_41.tif
DOI: 10.25346/s6eecgix/geridf
title: msXV_108v_65_40.tif
DOI: 10.25346/s6eecgix/3gme6a
title: msXV_108v_65_39.tif
DOI: 10.25346/s6eecgix/aifiwd
title: msXV_108v_65_38.tif
DOI: 10.25346/s6eecgix/hpp0tf
title: msXV_108v_65_37.tif
DOI: 10.5281/zenodo.17095584
title: Characterization data P4-1 transducer

description: This dataset contains characterization data of the P4-1 medical ultrasound transducer present at the Physics of Fluids group, University of Twente. The data is used as example data for the characterization pipeline published in the GitHub repository PROTEUS-SIM/transducer-characterization. With the dataset published here and the code in the GitHub repository, the results in arXiv:2509.22090 can be reproduced.

Files



ScanData.mat: MATLAB file containing holographic hydrophone scan data.Variables:



Grid: Scan grid properties

medium: propagation medium properties

voltage_mV: oscilloscope voltage data



TransmitData.mat: MATLAB file containing the transmit properties used to obtain the hydrophone scan.Variables:



Trans: transducer properties Verasonics

Transmit: electronic transmit waveform



ReceiveData.mat: MATLAB file containing the two-way receive data for receive characterization.Variables:



Trans: transducer properties Verasonics

Transmit: electronic transmit waveform

Receive: receive voltage data



PROTEUS-I.zip: copy of the transducer characterization data from IEEE Trans. Ultrason. Ferroelectr. Freq. Control 72, 848 (2024), included here as validation data. This archive file includes a readme file with further details.
DOI: 10.5281/zenodo.17095585
title: Characterization data P4-1 transducer

description: This dataset contains characterization data of the P4-1 medical ultrasound transducer present at the Physics of Fluids group, University of Twente. The data is used as example data for the characterization pipeline published in the GitHub repository PROTEUS-SIM/transducer-characterization. With the dataset published here and the code in the GitHub repository, the results in arXiv:2509.22090 can be reproduced.

Files



ScanData.mat: MATLAB file containing holographic hydrophone scan data.Variables:



Grid: Scan grid properties

medium: propagation medium properties

voltage_mV: oscilloscope voltage data



TransmitData.mat: MATLAB file containing the transmit properties used to obtain the hydrophone scan.Variables:



Trans: transducer properties Verasonics

Transmit: electronic transmit waveform



ReceiveData.mat: MATLAB file containing the two-way receive data for receive characterization.Variables:



Trans: transducer properties Verasonics

Transmit: electronic transmit waveform

Receive: receive voltage data



PROTEUS-I.zip: copy of the transducer characterization data from IEEE Trans. Ultrason. Ferroelectr. Freq. Control 72, 848 (2024), included here as validation data. This archive file includes a readme file with further details.
DOI: 10.25346/s6eecgix/8bfqeo
title: msXV_108v_46_36.tif
DOI: 10.25346/s6eecgix/6xzsxb
title: msXV_108v_46_35.tif
DOI: 10.25346/s6eecgix/7fma8j
title: msXV_108v_46_34.tif
DOI: 10.25346/s6eecgix/pnpqk7
title: msXV_108v_46_33.tif
DOI: 10.5065/d6b56gtk
title: HLY-04-03 Dissolved Organic Carbon (DOC) Data (Excel). Version 1.0

description: This dataset contains dissolved organic carbon (DOC) data collected during the 2004 SBI Summer Cruise (HLY-04-03).
DOI: 10.25346/s6eecgix/uhsogn
title: msXV_108v_46_32.tif
DOI: 10.25346/s6eecgix/w0riet
title: msXV_108v_46_31.tif
DOI: 10.25346/s6eecgix/jq0hci
title: msXV_108v_46_30.tif
DOI: 10.25346/s6eecgix/ndxezz
title: msXV_108v_46_29.tif
DOI: 10.25346/s6eecgix/ub3cwa
title: msXV_108v_46_28.tif
DOI: 10.25346/s6eecgix/vywtnc
title: msXV_108v_46_27.tif
DOI: 10.25346/s6eecgix/ulreoh
title: msXV_108v_46_26.tif
DOI: 10.25346/s6eecgix/59kbe1
title: msXV_108v_46_25.tif
DOI: 10.5065/d66d5r2t
title: SBI Bacteria Archaea (Excel). Version 1.0

description: This data file contains the data on prokaryotic community stricture, including the abundance of bacteria and archaea determined by fluorescence in situ hybridization (FISH) collected by Kirchman's group. These data are in Excel format.
DOI: 10.15468/dl.mvkmey
title: Occurrence Download

description: A dataset containing 648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dromaius"
 ]
}

 The dataset includes 648 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034924-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6eecgix/sjaq2o
title: msXV_108v_31_24.tif
DOI: 10.25346/s6eecgix/cjljl8
title: msXV_108v_31_23.tif
DOI: 10.25346/s6eecgix/xyy4yb
title: msXV_108v_31_22.tif
DOI: 10.25346/s6eecgix/omlb49
title: msXV_108v_31_21.tif
DOI: 10.25346/s6eecgix/dhvwlm
title: msXV_108v_31_20.tif
DOI: 10.15468/dl.dekcr3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5.36_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhaphiomidas terminatus"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034931-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6eecgix/x1bps9
title: msXV_108v_31_19.tif
DOI: 10.25346/s6eecgix/taggeb
title: msXV_108v_31_18.tif
DOI: 10.25346/s6eecgix/ydfk7y
title: msXV_108v_31_17.tif
DOI: 10.25346/s6eecgix/z4so3f
title: msXV_108v_31_16.tif
DOI: 10.5065/d62n50cx
title: Nathaniel B. Palmer Cruise NBP03-04a Raw ADCP Data. Version 1.0

description: This data set contains the shipboard Acoustic Doppler Current Profiler (ADCP) system measurements from the Nathaniel B. Palmer (NBP) data acquisitions systems on the 2003 SBI Survey Cruise. The ADCP system measures currents in the depth range from abut 30 to 300 meters in good weather. In bad weather or in ice the range is less. The data set consists of a single tar file containing one file for each day of data collection.
DOI: 10.15468/dl.f57v9w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persea americana",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034933-250920141307145/datasets/export for details.
DOI: 10.25346/s6eecgix/jeld9t
title: msXV_108v_31_15.tif
DOI: 10.15468/dl.gts6rq
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calamus zollingeri)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034934-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6eecgix/0zrqhi
title: msXV_108v_31_14.tif
DOI: 10.25346/s6eecgix/djs8dp
title: msXV_108v_31_13.tif
DOI: 10.25346/s6eecgix/wezjsq
title: msXV_108v_15_12.tif
DOI: 10.25346/s6eecgix/xqqivt
title: msXV_108v_15_11.tif
DOI: 10.25346/s6eecgix/66aleb
title: msXV_108v_15_10.tif
DOI: 10.25346/s6eecgix/eokh4o
title: msXV_108v_15_09.tif
DOI: 10.25346/s6eecgix/yjazpp
title: msXV_108v_15_08.tif
DOI: 10.5065/d6z0368t
title: Beaufort Sea Sediment Core Lipid Analysis, Station 10 (Excel). Version 1.0

description: This data set represents an analysis of fatty acids and neutral lipids in sediments from an undisturbed core taken with a 10cm diameter Benthos corer without a cutter or catcher during August and September 1987. These data are in Excel format.
DOI: 10.25346/s6eecgix/ahw9sy
title: msXV_108v_15_07.tif
DOI: 10.25346/s6eecgix/gzbevy
title: msXV_108v_15_06.tif
DOI: 10.25346/s6eecgix/jvuscg
title: msXV_108v_15_05.tif
DOI: 10.25346/s6eecgix/u9wr7b
title: msXV_108v_15_04.tif
DOI: 10.25346/s6eecgix/fesylw
title: msXV_108v_15_03.tif
DOI: 10.25346/s6eecgix/pftivf
title: msXV_108v_15_02.tif
DOI: 10.25346/s6eecgix/6mnnvz
title: msXV_108v_15_01.tif
DOI: 10.25346/s6eecgix/oewac6
title: msXV_108v_0_ring.tif
DOI: 10.15468/dl.4mwd9y
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Casuarius bennetti"
 ]
}

 The dataset includes 26 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034932-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6t72fkj
title: P-1 Corrected Probe Data from P1-92-AR (Excel). Version 1.0

description: This data represents corrected data for the mineral content for the Piston Core sample P-1 taken at P1-92-AR. This is in Excel format, but is also under "SBI: Mineral Content Data (Corrected) for Piston Core Sample P-1 taken at P1-92-AR (ASCII)(Darby)" in ASCII format.
DOI: 10.25346/s6eecgix/g3j0oh
title: msXV_108v.tif
DOI: 10.25346/s6eecgix/whclda
title: skin.svg
DOI: 10.25346/s6eecgix/kky6uv
title: skin.css
DOI: 10.25346/s6eecgix/crpxzo
title: plane_8.jpg
DOI: 10.15468/dl.nbrsmq
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Casuarius casuarius"
 ]
}

 The dataset includes 126 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034930-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6eecgix/1gbmg4
title: plane_7.jpg
DOI: 10.25346/s6eecgix/lj1rtl
title: plane_6.jpg
DOI: 10.25346/s6eecgix/e8zeuy
title: plane_5.jpg
DOI: 10.25346/s6eecgix/huerwq
title: plane_4.jpg
DOI: 10.5065/d6pg1pvt
title: HLY-02-01 Satellite, AVHRR 1KM Channel 2 Imagery. Version 1.0

description: This dataset consists of NOAA-12,14,15 and 16 AVHRR Channel 2 imagery. Observations are from the area and time of interest of the SBI U.S Coast Guard Cutter (USCGC) Healy Spring 2002 Cruise (HLY-02-01). Images are at a 1KM resolution and in .gif format.
DOI: 10.25346/s6eecgix/qbsetq
title: plane_3.jpg
DOI: 10.25346/s6eecgix/jjythd
title: plane_2.jpg
DOI: 10.25346/s6eecgix/cikw7n
title: plane_1.jpg
DOI: 10.25346/s6eecgix/indtlv
title: plane_0.jpg
DOI: 10.25346/s6eecgix/dgmsfn
title: openlime.min.js
DOI: 10.25346/s6eecgix/8exvjn
title: info.json
DOI: 10.25346/s6eecgix/q651kc
title: msXV_078r_47_26.tif
DOI: 10.25346/s6eecgix/h7ilef
title: msXV_078r_47_25.tif
DOI: 10.25346/s6eecgix/yzzaar
title: msXV_078r_31_24.tif
DOI: 10.5065/d6jq0z4h
title: HLY-04-02 Dissolved Inorganic Carbon (DIC) Data. Version 1.0

description: This data set contains Dissolved Inorganic Carbon (DIC) data collected during the SBI spring 2004 cruise of the Chukchi and Beaufort Seas aboard the U.S. Coast Guard Cutter (USCGC) Healy. Data are provided in both Excel file and ASCII file format, with one data file for each file format. Note: Data have been updated as of 10 June 2011.
DOI: 10.25346/s6eecgix/lrcumm
title: msXV_078r_31_23.tif
DOI: 10.25346/s6eecgix/jssb0i
title: msXV_078r_31_22.tif
DOI: 10.25346/s6eecgix/rxfqpv
title: msXV_078r_31_21.tif
DOI: 10.25346/s6eecgix/yo3q9s
title: msXV_078r_31_20.tif
DOI: 10.25346/s6eecgix/cm8zax
title: msXV_078r_31_19.tif
DOI: 10.25346/s6eecgix/udppkc
title: msXV_078r_31_18.tif
DOI: 10.25346/s6eecgix/scdohj
title: msXV_078r_31_17.tif
DOI: 10.25346/s6eecgix/kwlvol
title: msXV_078r_31_16.tif
DOI: 10.5065/d6dz06d5
title: HLY-04-04 Video Plankton Recorder (VPR) Data. Version 1.0

description: Data were collected on cruise HLY0404 to the Chukchi and Beaufort Seas on the U.S. Coast Guard Cutter (USCGC) Healy from 2 September 2004 to 1 October 2004 as part of the Shelf Basin Interactions program. The primary sampling instrument was a self-contained, battery powered, single camera Auto Video Plankton Recorder (AutoVPR; SeaScan, Inc.) that was deployed from the stern of the ship in a stainless-steel cage. The AutoVPR records video image frames from a Pulnix TM7 CCD camera at 720 x 640 pixels at 30 Hz as a wavelet compressed data stream together with coincident data from a SeaBird SBE49 Conductivity Temperature Depth (CTD) operating at 10Hz.
DOI: 10.25346/s6eecgix/99jwok
title: msXV_078r_31_15.tif
DOI: 10.25346/s6eecgix/viaj9s
title: msXV_078r_31_14.tif
DOI: 10.25346/s6eecgix/xbe4mr
title: msXV_078r_31_13.tif
DOI: 10.25346/s6eecgix/4hjv0k
title: msXV_078r_22_71.tif
DOI: 10.25346/s6eecgix/lgxmhy
title: msXV_078r_22_70.tif
DOI: 10.25346/s6eecgix/m2idqs
title: msXV_078r_22_69.tif
DOI: 10.25346/s6eecgix/ko4wym
title: msXV_078r_22_68.tif
DOI: 10.25346/s6eecgix/qelcnl
title: msXV_078r_22_67.tif
DOI: 10.5065/d6959fnr
title: HLY-02-03 Phytoplankton ID (ASCII). Version 1.0

description: Phytoplankton with cell size larger than 2-3 microns were analyzed for taxonomic composition, size composition including colonies size, numbers and biomass and vertical distribution of all the parameters. Phytoplankton cell count samples were collected from the surface and the subsurface chlorophyll maximum at experimental and optical stations during the United States Coast Guard Cutter (USCGC) Healy SBI 2002 summer cruise (HLY0203). These data are in ASCII format.
DOI: 10.25346/s6eecgix/xaa9w6
title: msXV_078r_22_66.tif
DOI: 10.25346/s6eecgix/77sbep
title: msXV_078r_22_65.tif
DOI: 10.25346/s6eecgix/lb8fwn
title: msXV_078r_22_64.tif
DOI: 10.25346/s6eecgix/eqhqxf
title: msXV_078r_22_63.tif
DOI: 10.25346/s6eecgix/xylhp5
title: msXV_078r_22_62.tif
DOI: 10.25346/s6eecgix/naqles
title: msXV_078r_22_61.tif
DOI: 10.15468/dl.9ewnne
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persea americana",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034935-250920141307145/datasets/export for details.
DOI: 10.25346/s6eecgix/o3cx1p
title: msXV_078r_22_60.tif
DOI: 10.25346/s6eecgix/bwkuiv
title: msXV_078r_15_12.tif
DOI: 10.25346/s6eecgix/vz6nd0
title: msXV_078r_15_11.tif
DOI: 10.5065/d65d8pzg
title: USCGC Healy HLY-03-03 Ship Log - Weather Information. Version 1.0

description: This data set contains the weather logs taken aboard the United States Coast Guard Cutter (USCGC) Healy HLY-03-03 cruise. The logs are in HTML format.
DOI: 10.25346/s6eecgix/qgkl1v
title: msXV_078r_15_10.tif
DOI: 10.15468/dl.awtq6r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persea americana",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034936-250920141307145/datasets/export for details.
DOI: 10.25346/s6eecgix/yqdk5y
title: msXV_078r_15_09.tif
DOI: 10.25346/s6eecgix/2dsulq
title: msXV_078r_15_08.tif
DOI: 10.25346/s6eecgix/yfwvts
title: msXV_078r_15_07.tif
DOI: 10.25346/s6eecgix/2j9ltl
title: msXV_078r_15_06.tif
DOI: 10.15468/dl.nrwgub
title: Occurrence Download

description: A dataset containing 1914 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemitaurichthys polylepis"
 ]
}

 The dataset includes 1914 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034938-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0194464.10fu
title: SH0194464.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194465.10fu
title: SH0194465.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194466.10fu
title: SH0194466.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194467.10fu
title: SH0194467.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0194468.10fu
title: SH0194468.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.