cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25592/uhhfdm.13701
title: Temporal Model BERT-Base_WikiWars

description: Temporal Model "BERT-Base" finetuned on the "WikiWars" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13698
title: Temporal Model BERT-Base_TempEval-3

description: Temporal Model "BERT-Base" finetuned on the "TempEval-3" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13700
title: Temporal Model BERT-Base_Tweets

description: Temporal Model "BERT-Base" finetuned on the "Tweets" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13697
title: Temporal Model BERT-Base_TempEval-3

description: Temporal Model "BERT-Base" finetuned on the "TempEval-3" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13699
title: Temporal Model BERT-Base_Tweets

description: Temporal Model "BERT-Base" finetuned on the "Tweets" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13696
title: Temporal Model BERT-Base_Fullpate

description: Temporal Model "BERT-Base" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13695
title: Temporal Model BERT-Base_Fullpate

description: Temporal Model "BERT-Base" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13694
title: Temporal Model mBERT_WikiWars

description: Temporal Model "mBERT" finetuned on the "WikiWars" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13693
title: Temporal Model mBERT_WikiWars

description: Temporal Model "mBERT" finetuned on the "WikiWars" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13692
title: Temporal Model mBERT_Tweets

description: Temporal Model "mBERT" finetuned on the "Tweets" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13690
title: Temporal Model mBERT_TempEval-3

description: Temporal Model "mBERT" finetuned on the "TempEval-3" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13691
title: Temporal Model mBERT_Tweets

description: Temporal Model "mBERT" finetuned on the "Tweets" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13689
title: Temporal Model mBERT_TempEval-3

description: Temporal Model "mBERT" finetuned on the "TempEval-3" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13688
title: Temporal Model mBERT_Fullpate

description: Temporal Model "mBERT" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13687
title: Temporal Model mBERT_Fullpate

description: Temporal Model "mBERT" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13679
title: Temporal Model RoBERTa-Base_Fullpate

description: Temporal Model "RoBERTa-Base" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.25592/uhhfdm.13678
title: Temporal Model RoBERTa-Base_Fullpate

description: Temporal Model "RoBERTa-Base" finetuned on the "Fullpate" dataset to solve the tasks of extraction and classification of temporal entities. Model produced in the master's thesis "Extraction and Classification of Time in Unstructured Data [Kirsanov, 2023]".
DOI: 10.21252/ry5f-jx92
title: Diabetes (all types) Read codes
DOI: 10.23708/5odiwk
title: Identification et caractérisation des gîtes larvaires d'Anopheles spp. dans la région de Korhogo, nord Côte d'Ivoire, 2016-2017

description: Données d’identification et de caractérisation des gîtes larvaires d’Anopheles spp. dans la région de Korhogo (nord Côte d'Ivoire) avant le déploiement de stratégies de lutte anti-vectorielle complémentaires à la moustiquaire imprégnée d'insecticide, dans le cadre du projet REACT (Gestion de la resistance aux insecticides au Burkina Faso et en Côte d'Ivoire : recherche sur les stratégies de lutte anti-vectorielle ). Chaque ligne correspond à un gîte larvaire positif à Anopheles spp. et/ou Culex spp. Pour chaque gîte larvaire positif, le code village, la saison, le type d’habitat, le périmètre, l’entourage, la distance de la zone habitée, le mouvement de l’eau, la turbidité de l’eau, l’exposition au soleil, la présence ou non de déchets solides, la présence ou non de déchets liquides, la présence ou non d’une végétation, la présence ou non de prédateurs, la densité moyenne de larves d’Anopheles spp., la densité moyenne de larves de Culex spp., la densité moyenne de nymphes de moustiques ont été renseignés. Au total, 620 gîtes larvaires d’anophèles ont été identifiés au cours de la saison pluvieuse et 188 au cours de la saison sèche. Les données collectées au cours de ces deux enquêtes ont été valorisées en 2019 dans la publication suivante : Zogo, B., Koffi, A.A., Alou, L.P.A. et al. Identification and characterization of Anopheles spp. breeding habitats in the Korhogo area in northern Côte d’Ivoire: a study prior to a Bti-based larviciding intervention. Parasites Vectors 12, 146 (2019). https://doi.org/10.1186/s13071-019-3404-0 ) Le protocole de recueil des données est détaillé dans la section "Remarques" des métadonnées.
DOI: 10.5281/zenodo.10051883
title: Instructions for ContinuousFlex software installation and Tutorial for running MDSPACE and MDTOMO with test datasets
title: Tutorial for AlgoSB 2023 school

description: Instructions for ContinuousFlex software installation and Tutorial for running MSPACE and MDTOMO methods of ContinuousFlex, together with test datasets. The ContinuousFlex installation instructions also include the instructions for installing Scipion, Xmipp, ChimeraX, and VMD (required for using ContinuousFlex). This distribution was prepared for the practical session of AlgoSB 2023 thematic school (Novembre 20 - 24, 2023, Cargese, France) on hybrid methods MDSPACE and MDTOMO for obtaining continuous conformational landscapes from cryo electron microscopy and cryo electron tomography data. Instructions for the software installation are in Instructions-Installation-ContinuousFlex.txt. The tutorial for the practical session is in MDSPACE_Tutorial_v4.docx and MDSPACE_Tutorial_v4.pdf.
DOI: 10.5281/zenodo.10051882
title: Instructions for ContinuousFlex software installation and Tutorial for running MDSPACE and MDTOMO with test datasets
title: Tutorial for AlgoSB 2023 school

description: Instructions for ContinuousFlex software installation and Tutorial for running MSPACE and MDTOMO methods of ContinuousFlex, together with test datasets. The ContinuousFlex installation instructions also include the instructions for installing Scipion, Xmipp, ChimeraX, and VMD (required for using ContinuousFlex). This distribution was prepared for the practical session of AlgoSB 2023 thematic school (Novembre 20 - 24, 2023, Cargese, France) on hybrid methods MDSPACE and MDTOMO for obtaining continuous conformational landscapes from cryo electron microscopy and cryo electron tomography data. Instructions for the software installation are in Instructions-Installation-ContinuousFlex.txt. The tutorial for the practical session is in MDSPACE_Tutorial_v4.docx and MDSPACE_Tutorial_v4.pdf.
DOI: 10.5281/zenodo.10141607
title: The rainfall-runoff data of four stations in Han River basin and six stations in middle reaches of Yangtze River basin

description: The data is the result of processing the original data which can be download from https://www.ncei.noaa.gov/products/climate-data-records/precipitation-cmorph and http://113.57.190.228:8001/web/Report/RiverReport#. The filename compiles with the rule "station name + data type + time"The baseline_L.py file is the core code of baseline method with attention-LSTM and the core code of the Incremental Training
DOI: 10.5281/zenodo.10141608
title: The rainfall-runoff data of four stations in Han River basin and six stations in middle reaches of Yangtze River basin

description: The data is the result of processing the original data which can be download from https://www.ncei.noaa.gov/products/climate-data-records/precipitation-cmorph and http://113.57.190.228:8001/web/Report/RiverReport#. The filename compiles with the rule "station name + data type + time"The baseline_L.py file is the core code of baseline method with attention-LSTM and the core code of the Incremental Training
DOI: 10.6084/m9.figshare.24572950
title: Dataset of phytoplankton primary productivity, FRRf, Chl-a in the Changjiang estuary, East China Sea-v2.xlsx

description: The file contains surface primary production rate, temperature, salinity, nutrients, Chla, FRRf data in ECS during summertime of 2019 and 2021. (version2)
DOI: 10.21252/m336-ae98
title: Frozen shoulder read codes
DOI: 10.3886/e194601
title: ECIN Replication Package for "The effect of observing multiple private information outcomes on the inclination to cheat"

description: Here you can retrieve the replication package for the article "The effect of observing multiple private information outcomes on the inclination to cheat" (written by Antonio Filippin and myself) accepted by Economic Inquiry.<br><br><pre>The paper investigates how the inclination to cheat changes when agents report the result of multiple realizations of a (private information) stochastic event rather than a single outcome. Multiple realizations render extreme outcomes unlikely, facilitating the identification of opportunistic behaviors and exposing to reputation concerns the individuals who report them. Consequently, multiple realizations lead to a significant reduction of cheating by large amounts. Simultaneously multiple realizations also diminish the intrinsic cost of lying, thereby inducing a widespread inclination to adjust upward the observed outcome in a plausible manner. The overall effect is only a marginal decrease in the degree of cheating.<br></pre>
DOI: 10.3886/e194601v1
title: ECIN Replication Package for "The effect of observing multiple private information outcomes on the inclination to cheat"

description: Here you can retrieve the replication package for the article "The effect of observing multiple private information outcomes on the inclination to cheat" (written by Antonio Filippin and myself) accepted by Economic Inquiry.<br><br><pre>The paper investigates how the inclination to cheat changes when agents report the result of multiple realizations of a (private information) stochastic event rather than a single outcome. Multiple realizations render extreme outcomes unlikely, facilitating the identification of opportunistic behaviors and exposing to reputation concerns the individuals who report them. Consequently, multiple realizations lead to a significant reduction of cheating by large amounts. Simultaneously multiple realizations also diminish the intrinsic cost of lying, thereby inducing a widespread inclination to adjust upward the observed outcome in a plausible manner. The overall effect is only a marginal decrease in the degree of cheating.<br></pre>
DOI: 10.3886/e194601v2
title: ECIN Replication Package for "The effect of observing multiple private information outcomes on the inclination to cheat"

description: Here you can retrieve the replication package for the article "The effect of observing multiple private information outcomes on the inclination to cheat" (written by Antonio Filippin and myself) accepted by Economic Inquiry.<br><br><pre>The paper investigates how the inclination to cheat changes when agents report the result of multiple realizations of a (private information) stochastic event rather than a single outcome. Multiple realizations render extreme outcomes unlikely, facilitating the identification of opportunistic behaviors and exposing to reputation concerns the individuals who report them. Consequently, multiple realizations lead to a significant reduction of cheating by large amounts. Simultaneously multiple realizations also diminish the intrinsic cost of lying, thereby inducing a widespread inclination to adjust upward the observed outcome in a plausible manner. The overall effect is only a marginal decrease in the degree of cheating.<br></pre>
DOI: 10.21252/g4zh-fp58
title: Type  2 Diabetes Read codes
DOI: 10.5281/zenodo.10141897
title: CIC-DUX4 chromatin prolfiling reveals new epigenetic dependencies and actionable therpaeutic targets in CIC-rearranged sarcomas
title: CIC-DUX4 chromatin prolfiling reveals new epigenetic dependencies and actionable therpaeutic targets in CIC-rearranged sarcomas

description: CIC-DUX4-rearranged sarcoma (CDS) is a rare and aggressive soft tissue tumor that occurs most frequently in young adults. The key oncogenic driver of this disease is the expression of the CIC-DUX4 fusion protein as a result of chromosomal rearrangements. CIC-DUX4 displays chromatin binding properties, and is therefore believed to function as an aberrant transcription factor. However, the chromatin remodeling events induced by CIC-DUX4 are not well understood, limiting our ability to identify new mechanism-based therapeutic strategies for these patients. Here we generated a genome wide profile of CIC-DUX4 DNA occupancy and associated chromatin states in human CDS cell models and primary tumors. Combining chromatin profiling, proximity ligation assays, as well as genetic and pharmacological perturbations, we show that CIC-DUX4 operates as a potent transcriptional activator at its binding sites.  This property is in contrast with the repressive function of the wild type CIC protein, and is mainly mediated through the direct interaction of CIC-DUX4 with the acetyltransferase p300. In keeping with this, we show p300 to be essential for CDS tumor cell proliferation, and its pharmacological inhibition to significantly impact tumor growth in vitro and in vivo. Taken together, our study elucidates the mechanisms underpinning CIC-DUX4-mediated transcriptional regulation and suggests a potential therapeutic approach for the clinical management of CDS patients.
DOI: 10.5281/zenodo.10141898
title: CIC-DUX4 chromatin prolfiling reveals new epigenetic dependencies and actionable therpaeutic targets in CIC-rearranged sarcomas
title: CIC-DUX4 chromatin prolfiling reveals new epigenetic dependencies and actionable therpaeutic targets in CIC-rearranged sarcomas

description: CIC-DUX4-rearranged sarcoma (CDS) is a rare and aggressive soft tissue tumor that occurs most frequently in young adults. The key oncogenic driver of this disease is the expression of the CIC-DUX4 fusion protein as a result of chromosomal rearrangements. CIC-DUX4 displays chromatin binding properties, and is therefore believed to function as an aberrant transcription factor. However, the chromatin remodeling events induced by CIC-DUX4 are not well understood, limiting our ability to identify new mechanism-based therapeutic strategies for these patients. Here we generated a genome wide profile of CIC-DUX4 DNA occupancy and associated chromatin states in human CDS cell models and primary tumors. Combining chromatin profiling, proximity ligation assays, as well as genetic and pharmacological perturbations, we show that CIC-DUX4 operates as a potent transcriptional activator at its binding sites.  This property is in contrast with the repressive function of the wild type CIC protein, and is mainly mediated through the direct interaction of CIC-DUX4 with the acetyltransferase p300. In keeping with this, we show p300 to be essential for CDS tumor cell proliferation, and its pharmacological inhibition to significantly impact tumor growth in vitro and in vivo. Taken together, our study elucidates the mechanisms underpinning CIC-DUX4-mediated transcriptional regulation and suggests a potential therapeutic approach for the clinical management of CDS patients.
DOI: 10.5281/zenodo.10142017
title: Containment in International Relations 52 Scopus data

description: The data contains 52 documents from the Scopus database. The data contains the topic of containment in the context of international relations.
DOI: 10.5281/zenodo.10142016
title: Containment in International Relations 52 Scopus data

description: The data contains 52 documents from the Scopus database. The data contains the topic of containment in the context of international relations.
DOI: 10.5281/zenodo.10141986
title: Great Ape Cerebral Aging - Expansion Relationship

description: This contains data associated with the manuscript "The Uniqueness of Human Vulnerability to Brain Aging in Great Ape Evolution" https://www.biorxiv.org/content/10.1101/2022.09.27.509685v1


 


The chimp.zip and IXI.zip contain data for the chimpanzee and human samples respectively. This includes the input matrix (subject x gray matter voxels), OPNMF bootstrap outputs, and OPNMF parcellaitons (2-40).


 


The outputs.zip contains outputs from the analyses conducted for the manuscript using the code from https://github.com/viko18/GreatApe_Aging.


 


The expansion_map.zip contains the modulated jacobians and templates following cross-species registration for the chimpanzee, baboon, and macaque templates.


 


y_JunaChimp_brain.nii.gz is the deformtion field map from chimpanzee template space to human and iy_*.nii.gz is the inverse, so human to chimpanzee.


 


Davi130_MNI_3mm_cortex.nii.gz is the avi130 chimpanzee parcellation in human MNI sapce.
DOI: 10.5281/zenodo.7116202
title: Great Ape Cerebral Aging - Expansion Relationship

description: This contains data associated with the manuscript "The Uniqueness of Human Vulnerability to Brain Aging in Great Ape Evolution" https://www.biorxiv.org/content/10.1101/2022.09.27.509685v1


 


The chimp.zip and IXI.zip contain data for the chimpanzee and human samples respectively. This includes the input matrix (subject x gray matter voxels), OPNMF bootstrap outputs, and OPNMF parcellaitons (2-40).


 


The outputs.zip contains outputs from the analyses conducted for the manuscript using the code from https://github.com/viko18/GreatApe_Aging.


 


The expansion_map.zip contains the modulated jacobians and templates following cross-species registration for the chimpanzee, baboon, and macaque templates.


 


y_JunaChimp_brain.nii.gz is the deformtion field map from chimpanzee template space to human and iy_*.nii.gz is the inverse, so human to chimpanzee.


 


Davi130_MNI_3mm_cortex.nii.gz is the avi130 chimpanzee parcellation in human MNI sapce.
DOI: 10.5281/zenodo.7116203
title: Great Ape Cerebral Aging - Expansion Relationship

description: This contains data associated with the manuscript "The Uniqueness of Human Vulnerability to Brain Aging in Great Ape Evolution" https://www.biorxiv.org/content/10.1101/2022.09.27.509685v1 The chimp.zip and IXI.zip contain data for the chimpanzee and human samples respectively. This includes the input matrix (subject x gray matter voxels), OPNMF bootstrap outputs, and OPNMF parcellaitons (2-40). The outputs.zip contains outputs from the analyses conducted for the manuscript using the code from https://github.com/viko18/GreatApe_Aging. The expansion_map.zip contains the modulated jacobians and templates following cross-species registration for the chimpanzee, baboon, and macaque templates. y_JunaChimp_brain.nii.gz is the deformtion field map from chimpanzee template space to human and iy_*.nii.gz is the inverse, so human to chimpanzee. Davi130_MNI_3mm_cortex.nii.gz is the avi130 chimpanzee parcellation in human MNI sapce.
DOI: 10.6096/1001
title: Hydrochemical data, Maddur - Berambadi, India

description: This data set contains the data related to the chemical composition of the Maddur stream and Maddur-Berambadi groundwater: the electrical conductivity (EC; µS/cm), pH and major ion concentrations (Na+, K+, Ca2+, Mg2+, NO3−, SO42−, F−, Cl−; µmol/L) are measured by default. Dissolved silica (Si; µmol/L), total alkalinity (Alk; µeq/L), dissolved organic carbon (DOC; mg/L), water temperature (WT; °C) are regularly measured in the groundwater and less frequently in the stream. Suspended particulate matter (SPM; mg/L) is measured only in the stream.
Maddur stream geochemical monitoring was initiated in April 2004. It relied first on manual sampling of base flow and further on a battery-operated automatic sampler triggered by a water level probe that collected stream storms at hourly frequency. The main gaps, due to sampler failure and bridge renovation, occurred for the years 2006-2008, 2015-2016, 2018 and due to access restrictions in 2011-2012.
Groundwater geochemical monitoring was initiated in December 2006 in the Maddur sub-watershed (n=10 to 88 samples per field campaign; see file “Maddur_water_points_locations” for details about the nature of sampling points and their location). This seasonal monitoring (dry season, monsoon and post-monsoon) was interrupted from July 2010 to April 2012 and stopped in December 2012. Missing anion data concern the monsoon 2007. Missing Si data concern some post-monsoon 2006, monsoon 2008, monsoon 2009, post- monsoon 2012. Groundwater monitoring was up scaled to the Berambadi watershed in 2012 (n=140 to 180 samples), mostly on annual basis. Fourteen sampling points are part of the Maddur watershed and common with the initial groundwater monitoring. Berambadi groundwater could not be collected in 2015, 2017 and 2019. Missing Si data concern September 2012, January, June and October 2013, November 2016 and January 2020. Missing DOC data concern January and June 2013, November 2016, December 2018, January 2020.
DOI: 10.6084/m9.figshare.24572980
title: <b>Adaptive copy number variations of </b><b>ancient</b><b> prokaryotic genes in marine fish colonization</b>

description: The code and data used for the review of manuscript ELE-01126-2023.
DOI: 10.6084/m9.figshare.24572980.v1
title: <b>Adaptive copy number variations of </b><b>ancient</b><b> prokaryotic genes in marine fish colonization</b>

description: The code and data used for the review of manuscript ELE-01126-2023.