cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22670980.v1
title: Tradeoffs in non-native plant herbivore defenses enhance performance

description: To compare herbivore pressure on a wide range of non-native and native species under natural conditions, we conducted a field survey in abandoned agricultural fields at 28 sites in northern China. We conducted a common garden experiment at Henan University, Kaifeng, China. We selected the 12 most common non-native herbaceous species in the field survey and compared herbivory on these species and 12 co-planted native congeners. We used the same species as in the common garden to assess constitutive and induced defenses. To quantify constitutive defenses, which can inhibit insect growth, we measured larval weight gain when fed on undamaged leaves harvested from undamaged plants. To quantify induced defenses, we measured larval weight gain on undamaged leaves that were harvested from plants possessing other leaves previously damaged by herbivores. We measured total phenolics and total triterpenoids in leaves harvested from undamaged and herbivore-damaged plants for same species as described above in the common garden. To evaluate the relationship between the strength of induced defenses and plant growth, we measured the absolute growth rate for the species in the common garden.
DOI: 10.6084/m9.figshare.14604780.v1
title: Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety

description: PacBio long reads, 10x Genomics (10xG) reads, and proximity-ligation scaffolding (Hi-C) were used to create the dAg1_v1.0 reference genome sequence.<br>The assembled genome sequence and the annotation files are here available.
DOI: 10.6084/m9.figshare.24784497.v2
title: S6-P5-FinalExperiment

description: This has the daily spectral readings along with the predicted mL and the daily EC readings. Tank 1 was control Tank 2 was the treatment. S0 corresponds with Sensor 1 in the paper and S3 corresponds with Sensor 4.
DOI: 10.6084/m9.figshare.27995390.v2
title: <i>Blastocrithidia frustrata</i> predicted proteins

description: Protein-coding genes of Blastocrithidia spp. were predicted based on evidence taken from transcriptomic read mapping, trans-splicing sites, and the alignments with the reference proteins from B. nonstop (Kachale et al. 2023) and trypanosomatid species available in TriTrypDB release 52.
DOI: 10.6084/m9.figshare.8126669.v1
title: Twitter Data for Article 17

description: Twitter data harvested with TAGS v.6.1.9;.
DOI: 10.17632/3c3ymbjt64
title: Data for: Time discounting and consumer preferences - Insights for accelerating the adoption of efficient energy technologies

description: A review of consumer discount rates for efficient energy and transport technologies
DOI: 10.17632/9tct5tykgf
title: Data for: Clinical characteristics and prognostic risk factors of Anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitides (AAV)
DOI: 10.17632/dn82gkvf4f
title: Symbolic computation of analytic approximate solutions for nonlinear fractional differential equations

description: Abstract The Adomian decomposition method (ADM) is one of the most effective methods to construct analytic approximate solutions for nonlinear differential equations. In this paper, based on the new definition of the Adomian polynomials, Rach (2008) [22], the Adomian decomposition method and the Padé approximants technique, a new algorithm is proposed to construct analytic approximate solutions for nonlinear fractional differential equations with initial or boundary conditions. Furthermore, a MAPLE so... Title of program: ADMP Catalogue Id: AENE_v1_0 Nature of problem Constructing analytic approximate solutions of nonlinear fractional differential equations with initial or boundary conditions. Non-smooth initial value problems can be solved by this program. Versions of this program held in the CPC repository in Mendeley Data AENE_v1_0; ADMP; 10.1016/j.cpc.2012.07.015 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/svzhm3w4f7
title: At-Home Nail Drill For Improvement of Nail Plate Thickening

description: Mendeley Supplemental Figure 1: At-home nail drill utilized to improve appearance of nail plate thickening. The device is rechargeable and handheld, with adjustable speeds and an optional dust collector to prevent particle dispersion. Axler, Eden; Lipner, Shari (2024), “At Home Technique for Debridement of Nail Plate Thickening ”, Mendeley Data, V1, doi: 10.17632/tg57h35h23.1
DOI: 10.6084/m9.figshare.12477947.v3
title: Monsoon Enhanced Silicate Weathering as a New Atmospheric CO2 Consumption Mechanism Contributing to Fast Late Miocene Global Cooling

description: Data Set S1. Clay mineral contents in the study sectionsData Set S2. Major element contents in the Chaona SectionTable S1. Clay minerals of surface sediments along the Yellow River and comparisons with mean annual temperature (MAT) and precipitation (MAP) Table S2. Na<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> ratio and CO<sub>2</sub> consumption for loess and palaeosol samples in northern East China, red soils in southern East China based on the upper crust composition in East China.Table S3. Na<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> ratio and CO<sub>2</sub> consumption (mol C kg<sup>-1</sup>) for loess and palaeosol samples, red soils when using various recommended values of average upper crust compositions.Table S4. Fit for Na<sub>2</sub>O/Al<sub>2</sub>O3 ratio and CO<sub>2</sub> consumption (mol C kg<sup>-1</sup>) using various recommended values of the upper crust<br><br>
DOI: 10.6084/m9.figshare.22128842.v1
title: IRIS

description: Data associated with manuscript published in Communications Biology
DOI: 10.6084/m9.figshare.3514427.v1
title: Supplement 1. Sample R script and data for analyzing fuel treatment effects on burn severity using ordinary least-squares regression and sequential autoregression.

description: File List camp32.R -- R code for analysis of the Camp 32 fire<br> camp32.csv -- Data file for the Camp 32 fire Description The camp32.R file is an ASCII file containing R code for fitting ordinary least squares regression (OLS) and sequential autoregression (SAR) modeling and for mapping the decomposition of the SAR model. The camp32.csv file is a comma-delimited ASCII file containing data from a 25% sample of 30 m raster cells from the Camp 32 fire. Column definitions: x = UTM easting of the cell center y = UTM northing of the cell center dnbr = Differenced normalized burn ratio trtmt = Fuel treatment: U = untreated; T = thinned; TB = thinned and burned elev = Elevation in meters asp_hl = Heat load index, ranging from 0 on southwest aspects to 1 on northeast aspects slop = Slope angle in percent fm40 = Fire behavior fuel model: Codes are from Scott and Burgan (2005) cc = Percent canopy cover Checksum values: dnbr: Checksum=381706, 0 missing values elev: Checksum=178768, 0 missing values cc: Checksum=67170, 0 missing values
DOI: 10.6084/m9.figshare.9633536.v1
title: Incidence of Irvine Gass Syndrome after Phacoemulsification with Spectral-Domain Optical Coherence Tomography

description: <i>Purpose</i>: Incidence of significant and non-significant macular edema found using spectral-domain optical coherence tomography (SD-OCT) following cataract surgery. <i>Methods</i>: Prospective, cohort series conducted at the Croix Rousse University Hospital. Significant macular edema (SME) was defined as the presence of fluid with an increase of 30% or more in central subfield macular thickness compared to baseline on SD-OCT at 6 weeks and non-significant macula edema (NSME) as an increase of less than 30%. <i>Results</i>: Nine hundred and twenty-eight eyes in 638 patients were included in the study. Incidence of Irvine Gass (IG) syndrome was 9%, 2.3% of patients presented SME, 6.8% NSME. Epiretinal membrane, diabetes, and capsular rupture were significantly associated with a risk of IG. The risk of developing IG in the fellow eye was 23% in cases of IG in the first eye. In total 8.4% of all included patients developed chronic IG (duration of more than 6 months). <i>Conclusion</i>: This study reports the incidence of IG during 6 months of surgical activity at a French university hospital center.
DOI: 10.17632/b6252s2dzc
title: STEM Professionals Questionnaire Responses

description: With the aim of mobilizing engineers and scientists to address environmental, climate, and energy justice challenges, this data contains the responses of a convenience sample (n = 281) through an online questionnaire. Our study examines how engineers and scientists in the U.S. view their incentives, barriers, and potential for community-based collaborations.
DOI: 10.6084/m9.figshare.12355115.v1
title: SNPs dataset Aedes aegypti Northwestern Argentina

description: SNP dataset used for genetic analyses for Aedes aegypti samples from Northwestern Argentina (vcf file)
DOI: 10.6084/m9.figshare.24752052.v1
title: <b>The carry-over effect of physical activity in pro-environmental behavior</b>

description: This research with three distinct studies examined the potential carry-over effect and its mechanism between two highly goal-driven behaviors, namely physical activity behavior and pro-environmental behavior.
DOI: 10.6084/m9.figshare.28319069.v1
title: PAPER DATA

description: <pre>RAW STUDY DATA:Impact of electroconvulsive therapy in a university hospital: an epidemiological and mirror-image study.</pre>
DOI: 10.6084/m9.figshare.28929617.v3
title: conceptual modelling

description: The data sets is presented
DOI: 10.6084/m9.figshare.4747930.v1
title: Supplementary Material for: Ciliary Beating Plane and Wave Propagation in the Bovine Oviduct

description: The uterine tube is an essential conduit for the gametes and zygote during reproduction. The necessary bidirectional conveyance occurs through peristalsis and ciliary activity, but unlike in respiratory tract, little is known about mucociliary transport in the uterine tube, and the direction of transport and the alignment of oviductal cilia have not been conclusively characterized. This study aimed to determine the uniformity in the axonemal orientation of motile cilia in the bovine uterine tube, to identify the direction of mucociliary transport and to relate the presumptive beating plane and the mucociliary transport direction to the long axis of the uterine tube. The angular spread of oviductal motile cilia was determined by electron microscopy, and by maintaining the accurate alignment of the samples throughout the processing steps, axonemal orientation was determined relative to the long axis of the oviduct. The direction of the effective mucociliary transport was determined by the analysis of video microscopic data recorded on explants. Vector-based analysis of electron micrographs yielded the mean angle of deviation between the ‘effective ciliary stroke', as derived from axonemal orientation, and the tubal longitudinal axis pointing towards the uterus to be 0.8°, with a standard deviation of 35.2°. The corresponding angular deviation of the short-wave propagation was -6.8° (SD 34.6°). These results show that oviductal motile cilia are rigorously aligned, that the beating plane of the cilia is parallel to the long axis of the uterine tube and that the ‘effective stroke' and mucociliary transport are directed towards the uterus.
DOI: 10.6084/m9.figshare.7203305.v1
title: Classifier and vectorizer pickle files

description: Classifiers and vectorizers for ATHENA CogPO label prediction.
DOI: 10.17632/3d6wy4tynd
title: PIHASI, PIDASI, and IGA Scales

description: Scales used in the JAAD publication "PIDASI and PIHASI: Scoring Tools for Assessment of Post-Inflammatory Hyperpigmentation" Novel PIHASI scale, full PIDASI scale, industry standard IGA scale.
DOI: 10.17632/z82s79rwfb
title: Explainable No-Code OECD-Compliant Machine Learning Models to Predict the Mutagenic Activity of Polycyclic Aromatic Hydrocarbons and Their Radical Cation Metabolites

description: Supplementary Material for "Explainable No-Code OECD-Compliant Machine Learning Models to Predict the Mutagenic Activity of Polycyclic Aromatic Hydrocarbons and Their Radical Cation Metabolites" (Submitted) : All supporting files necessary for this research are combined in a single .ZIP archive. The archive includes two primary folders: 'Outputs' and 'WEKA File', holding .xyz files for the molecular structures of the activated metabolites and procarcinogens, respectively. The 'WEKA File’ folder also provides the .arff files used for training and testing, organized by each specific data split. The ‘PAHs-GFN2-Data.xlsx' file includes the primary datasets used in this study, including all extracted molecular details, SMILES notations, numerical IDs, CDFT descriptors, and biological responses, categorized by data split.
DOI: 10.6084/m9.figshare.20179727.v2
title: FASTQ files

description: Fastq files containing sequences of the V3-V4 hypervariable region of gene 16S rRNA from microbial content of six goat cheeses from Spain. Three samples per cheese were analyzed.
DOI: 10.6084/m9.figshare.29146307.v1
title: DLPFC data

description: DLPFC processed data
DOI: 10.6084/m9.figshare.5124799.v1
title: Supplementary Material for: Neurosubstrates of Remission following Prolonged Exposure Therapy in Veterans with Posttraumatic Stress Disorder

description: <b><i>Background:</i></b> Prolonged exposure (PE) therapy is the first-line treatment for posttraumatic stress disorder (PTSD) in combat veterans. The underlying brain changes of treatment effect in PTSD are currently unknown. <b><i>Methods:</i></b> A total of 31 veterans with PTSD completed an fMRI scan performing an affective anticipation task at baseline and were enrolled in PE therapy. Of these, 7 prematurely terminated therapy, while 24 individuals completed PE therapy and an identical follow-up fMRI scan. At follow-up, 15 of the 24 completers still had diagnosable PTSD (NR-PTSD) and 9 of the 24 completers showed complete remission from PTSD (R-PTSD), i.e. they did not meet diagnostic criteria for PTSD. <b><i>Results:</i></b> The left anterior insula showed a significant group by scan session interaction. Specifically, the R-PTSD group showed decreased activation during anticipation of negative images from pre- to posttreatment scans, while the NR-PTSD group showed increased activation during anticipation of positive images in this region. Furthermore, the change in functional activation in the insula co-occurred with increased connectivity between this insular region and the right cingulate and right mid-posterior insular region in R-PTSD. <b><i>Conclusions:</i></b> These findings suggest that the capacity to effectively remit from PTSD symptoms after PE treatment requires the ability to connect with physiological signals and moderate the discomfort of anticipatory anxiety of exposure therapy. These processes appear to be controlled by a network where the anterior insula is connected with the cingulate and the mid-posterior insula.
DOI: 10.6084/m9.figshare.5732346.v1
title: S2 File

description: supporting information
DOI: 10.6084/m9.figshare.6530948.v1
title: Supplementary Material for: Genetic Diversity of <b><i>Mycobacterium tuberculosis</i></b> Isolates in the Metropolitan Area of Rome

description: <b><i>Background:</i></b> The presence in a geographic area of <i>Mycobacterium tuberculosis</i> <i>(Mtb)</i> strains belonging to different phylogeographic lineages and showing different drug susceptibility patterns may suggest recent transmission, with implications in terms of patient clinical management and disease control. The aim of this study was to carry out a preliminary epidemiological investigation of tuberculosis (TB) cases in Rome. <b><i>Methods:</i></b> A total of 232 <i>Mtb</i> isolates, collected from new or previously treated patients, admitted between 2008 and 2014 at 2 hospital settings in Rome with a diagnosis of TB, were analyzed by spoligotyping and analyzing 24 variable-number tandem repeats (VNTR) mycobacterial interspersed repetitive-unit (MIRU) loci. The SITVIT2 database and the MIRU-VNTRplus web applications were used to identify the strain genotypes and to generate phylogenetic trees. <b><i>Results:</i></b> Based on the position on the phylogenetic tree, 97.4% of the strains were associated with 1 of the 7 main lineages. The Euro-American lineage was the most commonly represented (81.9%) within both Italian and foreign-born populations, although all main lineages were present. The highest frequency of drug-resistant strains was found among the East-Asian lineage (Beijing genotype) isolated from foreign-born patients. <b><i>Conclusions:</i></b> Dynamics of TB transmission in Rome indicate recent spread of <i>Mtb</i> strains belonging to phylogeographic lineages and clades usually found in countries and geographic areas with a high incidence of TB, similarly to what is observed in most metropolitan areas in Western Europe. Knowledge from molecular and classical epidemiology provides an important tool for disease control.
DOI: 10.6084/m9.figshare.11350187.v1
title: Data and R code for "Uncertainty in optimal fingerprinting is underestimated"

description: This file contains the source code and data sets used in the manuscript.<br>simulation: source code and parameters for simulation section.<br>real_data_analysis: code and data sets for conducting data analysis in the manuscript. <br>
DOI: 10.6084/m9.figshare.24449635.v1
title: ESI for An iron fist in a velvet glove: The cooperation of a novel pyoverdine from <i>Pseudomonas donghuensis</i> P482 (PVD<sub>P482</sub>) with 7-hydroxytropolone is pivotal for its antibacterial activity

description: Electrospray ionisation mass spectra and MS/MS analysis were performed on a Triple TOF 5600+ Sciex mass spectrometer connected to the microLC200 Eksigent chromatography system. The chromatographic separation of the preparation was carried out on a ChromXP C18 column 0.3x150 mm with a particle size of 0.3 μm in a gradient of 8 % B for 1 min, 8-40 % B 1-26 minutes, 98 % B 26-29 min and 8 % B 29-30 min. The flow was kept at 5 μl min<sup>-1</sup>, and the injection was 5 μL of the preparation. The system was controlled by the Analyst 1.7 TF software.
DOI: 10.6084/m9.figshare.24265015.v1
title: Variant Result

description: Performance results for AIGC Detectors across variants
DOI: 10.6084/m9.figshare.26938906.v1
title: Chromosome-scale assembly of apple mint (<i>Mentha suaveolens</i>).

description: Mint oil is used in various commercial applications world-wide. Here, we present a chromosome-scale assembly of the genome of a clone of <i>Mentha suaveolens</i> (apple mint), one of the progenitors of both spearmints and peppermints. Together with the previously assembled genome of <i>Mentha longifolia</i> (horse mint), these assemblies are instrumental in addressing questions regarding the origins of spearmint and peppermint oil, and to start elaborating strategies for mint cultivar improvement.
DOI: 10.6084/m9.figshare.28430873.v4
title: Crowdsourcing Dust Storms in the United States Utilizing Social Media Data

description: Dust storms are natural phenomena characterized by strong winds carrying large amounts of fine particles which have significant environmental and human impacts. However, capturing the occurrence of such phenomena is a challenge. Previous studies have limitations due to available data, especially regarding short-lived, intense dust storms that are not captured by observing stations and satellite instruments. In recent years, the advent of social media platforms has provided a unique opportunity to access vast amounts of crowdsourced data. This datasets and R scripts were used to explore the utilization of Flickr and X (Twitter) data to study dust event occurrences within the United States and their correlation with National Weather Service (NWS) advisories. The work ascertains the reliability of using crowdsourced data as a supplementary source for dust storm monitoring.
DOI: 10.6084/m9.figshare.5259424.v1
title: METAGENOMIC-READS-HBD-nifH-GENES-RECRUITED-FROM-TARA

description: Short reads our <i>nifH</i> genes recruited from TARA Oceans metagenomes, and their identities to the consensus gene sequence.<br>
DOI: 10.6084/m9.figshare.1189418.v3
title: Trade-offs between accuracy and interpretability in random-effects models of growth - Data and code

description: Data and code for the analysis presentend in the manuscript "Trade-offs between accuracy and interpretability in random-effects models of growth" by Simone Vincenzi, Alain J Crivelli, Stephan Munch, Hans J Skaug, Marc Mangel. README.txt has general information on admb Flow analysis.txt has the step by step guidelines to redo the analysis presented in the manuscript vB.zip has all the files necessary to repeat the analysis. You can drop me a line at simon.vincenz@gmail.com
DOI: 10.6084/m9.figshare.5135887.v1
title: Formato estandarizado para el desarrollo de indicadores de calidad de la atención.

description: El formato estandarizado sirve para desarrollar las especificaciones técnicas de un indicador de calidad de la atención. Otro nombre con el que se le suele denominar es ficha técnica o especificación técnica del indicador.<br>Este formato ha sido creado por el autor.
DOI: 10.17632/2vsrjbtfp5
title: Data for: FlotationNet: A hierarchical deep learning network for froth flotation recovery prediction

description: Data are from a manufacturing froth flotation plant. The first column shows time and date range (from march of 2017 until september of 2017).The second and third columns are quality measures of the iron ore pulp right before it is fed into the flotation plant. Column 4 until column 8 are the most important variables that impact in the ore quality in the end of the process. From column 9 until column 22, we can see process data (level and air flow inside the flotation columns, which also impact in ore quality. The last two columns are the final iron ore pulp quality measurement from the lab.
DOI: 10.17632/mw244y6rbt
title: Layer-Based Analysis and Structural Integrity of 3D Printing STL Files

description: This dataset is a structured tabular dataset, specifically designed for analyzing 3D printing STL files. It contains numerical and categorical features that provide detailed information on the volume, bounding box dimensions, layer counts, and structural properties of 3D printed models. This dataset is valuable for assessing printability, stability, and material requirements in the 3D printing process.
DOI: 10.6084/m9.figshare.28532924.v1
title: Siedlecki_I._PhD Dissertation_Chapter 2 Supplementary Tables (ST).xlsx

description: Supplementary Tables for the second chapter of Siedlecki I. PhD dissertation.
DOI: 10.6084/m9.figshare.28593935.v1
title: <b>Mechanistic Insights and Computer-Informed Design of α-Galactosidase for Galactooligosaccharide Synthesis</b>

description: This dataset accompanies the manuscript: " <b>Mechanistic Insights and Computer-Informed Design of α-Galactosidase for Galactooligosaccharide Synthesis</b>".<br>It contains sample CHARMM input and output files, and topologies required for QM/MM MD and QM/MM umbrella sampling simulations of hydrolysis and transglycosylation reaction in a GH27 family <i>Saccharomyces cerevisiae</i> α-galactosidase (ScAGal).
DOI: 10.6084/m9.figshare.8081408.v1
title: Source Data

description: Dataset of "Regulating Intracellular Fate of siRNA by Endoplasmic Reticulum Membrane-Decorated Hybrid Nanoplexes"