cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b9n9ws
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eremophila drummondii F.Muell.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043054-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxeryb
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-80.3821851000000009 40.9689499999999995, -80.3821851000000009 40.9698596300000020, -80.3821851000000009 40.9705418599999973, -80.3821851000000009 40.9713377799999989, -80.3821851000000009 40.9724748200000022, -80.3821851000000009 40.9732707499999975, -80.3821851000000009 40.9746352000000016, -80.3808778599999982 40.9746352000000016, -80.3791159400000055 40.9746352000000016, -80.3779792200000003 40.9746352000000016, -80.3771266800000035 40.9746352000000016, -80.3757626200000033 40.9746352000000016, -80.3743417000000022 40.9746352000000016, -80.3743417000000022 40.9737255699999992, -80.3743417000000022 40.9728159399999967, -80.3743417000000022 40.9717357500000006, -80.3743417000000022 40.9710535199999981, -80.3743417000000022 40.9700870400000028, -80.3743417000000022 40.9689499999999995, -80.3753079300000053 40.9689499999999995, -80.3768424999999951 40.9689499999999995, -80.3780928900000049 40.9689499999999995, -80.3797411399999930 40.9689499999999995, -80.3812188699999979 40.9689499999999995, -80.3821851000000009 40.9689499999999995))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099616-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smfodk
title: Occurrence Download

description: A dataset containing 34726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-46 18,64 18,64 75,-46 75,-46 18))",
 "HasCoordinate is true",
 "TaxonKey is Vespa velutina Lepeletier, 1836",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34726 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000460-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amtaaj
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limonium insigne (Coss.) Kuntze",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 416 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263546-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4pr3f
title: Occurrence Download

description: A dataset containing 21963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-74.0171117999999950 40.5929701000000023, -74.0171117999999950 40.5969045399999970, -74.0171117999999950 40.6008389799999989, -74.0171117999999950 40.6035930899999968, -74.0171117999999950 40.6073308100000006, -74.0171117999999950 40.6102816399999966, -74.0171117999999950 40.6126422999999974, -74.0137587699999955 40.6126422999999974, -74.0096161099999961 40.6126422999999974, -74.0048816500000015 40.6126422999999974, -73.9995553800000039 40.6126422999999974, -73.9940318299999973 40.6126422999999974, -73.9902837199999937 40.6126422999999974, -73.9855498000000011 40.6126422999999974, -73.9855498000000011 40.6092980299999979, -73.9855498000000011 40.6061504700000029, -73.9855498000000011 40.6022160300000010, -73.9855498000000011 40.5988717600000015, -73.9855498000000011 40.5961176499999965, -73.9855498000000011 40.5929701000000023, -73.9908755200000030 40.5929701000000023, -73.9934400300000021 40.5929701000000023, -73.9971881400000058 40.5929701000000023, -74.0025144199999971 40.5929701000000023, -74.0060652599999997 40.5929701000000023, -74.0096161099999961 40.5929701000000023, -74.0139560399999965 40.5929701000000023, -74.0171117999999950 40.5929701000000023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 21963 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094932-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu5wbe
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clavaspis coursetiae (Marlatt, 1908)",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129748-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23157995.v1
title: Sensitivity Analyses of Clinical Trial Designs: Selecting Scenarios and Summarizing Operating Characteristics

description: The use of simulation-based sensitivity analyses is fundamental for evaluating and comparing candidate designs of future clinical trials. In this context, sensitivity analyses are especially useful to assess the dependence of important design operating characteristics with respect to various unknown parameters. Typical examples of operating characteristics include the likelihood of detecting treatment effects and the average study duration, which depend on parameters that are unknown until after the onset of the clinical study, such as the distributions of the primary outcomes and patient profiles. Two crucial components of sensitivity analyses are (i) the choice of a set of plausible simulation scenarios and (ii) the list of operating characteristics of interest. We propose a new approach for choosing the set of scenarios to be included in a sensitivity analysis. We maximize a utility criterion that formalizes whether a specific set of sensitivity scenarios is adequate to summarize how the operating characteristics of the trial design vary across plausible values of the unknown parameters. Then, we use optimization techniques to select the best set of simulation scenarios (according to the criteria specified by the investigator) to exemplify the operating characteristics of the trial design. We illustrate our proposal in three trial designs. Supplementary materials for this article are available online.
DOI: 10.15468/dl.cznjbt
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Premier catalogue d'espèces de Bacillariophycae (diatomées) de la ville de Vandoeuvre-les-Nancy"
 ]
}

 The dataset includes 205 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014372-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24545653
title: Hidden Markov Models for Low-Frequency Earthquake Recurrence

description: Low-frequency earthquakes (LFEs) are small magnitude earthquakes with frequencies of 1–10 Hertz which often occur in overlapping sequence forming persistent seismic tremors. They provide insights into large earthquake processes along plate boundaries. LFEs occur stochastically in time, often forming temporally recurring clusters. The occurrence times are typically modeled using point processes and their intensity functions. We demonstrate how to use hidden Markov models coupled with visualization techniques to model inter-arrival times directly, classify LFE occurrence patterns along the San Andreas Fault, and perform model selection. We highlight two subsystems of LFE activity corresponding to periods of alternating episodic and quiescent behavior.
DOI: 10.6084/m9.figshare.24545653.v1
title: Hidden Markov Models for Low-Frequency Earthquake Recurrence

description: Low-frequency earthquakes (LFEs) are small magnitude earthquakes with frequencies of 1–10 Hertz which often occur in overlapping sequence forming persistent seismic tremors. They provide insights into large earthquake processes along plate boundaries. LFEs occur stochastically in time, often forming temporally recurring clusters. The occurrence times are typically modeled using point processes and their intensity functions. We demonstrate how to use hidden Markov models coupled with visualization techniques to model inter-arrival times directly, classify LFE occurrence patterns along the San Andreas Fault, and perform model selection. We highlight two subsystems of LFE activity corresponding to periods of alternating episodic and quiescent behavior.
DOI: 10.15468/dl.7h6por
title: Occurrence Download

description: A dataset containing 113143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-180 -89.993,180 -89.993,180 90,-180 90,-180 -89.993))",
 "HasCoordinate is true",
 "TaxonKey is Chiroptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 113143 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022583-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.535zze
title: Occurrence Download

description: A dataset containing 114878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "HasCoordinate is true"
 ]
}

 The dataset includes 114878 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264225-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kg4j46
title: Occurrence Download

description: A dataset containing 6867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-73.9868678999999929 40.6010404000000023, -73.9868678999999929 40.6026124500000023, -73.9868678999999929 40.6060709699999975, -73.9868678999999929 40.6101583000000019, -73.9868678999999929 40.6128307899999967, -73.9868678999999929 40.6166037099999997, -73.9868678999999929 40.6192762000000016, -73.9819860500000033 40.6192762000000016, -73.9786789900000059 40.6192762000000016, -73.9766317600000036 40.6192762000000016, -73.9736396600000035 40.6192762000000016, -73.9711199999999991 40.6192762000000016, -73.9711199999999991 40.6173897400000001, -73.9711199999999991 40.6142456299999992, -73.9711199999999991 40.6107871199999977, -73.9711199999999991 40.6081146300000029, -73.9711199999999991 40.6046561200000014, -73.9711199999999991 40.6010404000000023, -73.9745845399999951 40.6010404000000023, -73.9769467200000008 40.6010404000000023, -73.9811986600000040 40.6010404000000023, -73.9845057200000014 40.6010404000000023, -73.9868678999999929 40.6010404000000023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 6867 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094935-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.535kpb
title: Occurrence Download

description: A dataset containing 27763 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Geometry POLYGON((111.80566 -28.50538,117.65039 -28.50538,117.65039 -21.74725,111.80566 -21.74725,111.80566 -28.50538))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)",
 "TaxonKey is Caretta caretta (Linnaeus, 1758)",
 "TaxonKey is Aipysurus fuscus (Tschudi, 1837)",
 "TaxonKey is Aipysurus foliosquama Smith, 1926",
 "TaxonKey is Aipysurus apraefrontalis Smith, 1926",
 "TaxonKey is Dugong dugon (Müller, 1776)",
 "TaxonKey is Dugong dugon (Illiger, 1811)"
 ]
 },
 "Year 2012-2022"
 ]
}

 The dataset includes 27763 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121111-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25976665
title: SF 36 Nepali version.docx

description: A validated Nepali version of SF 36
DOI: 10.15468/dl.u6bugy
title: Occurrence Download

description: A dataset containing 63757002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is USA.5_1"
 ]
}

 The dataset includes 63757002 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094938-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ieldwc
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Desmodium orbiculare Schltdl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 334 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013653-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xslobf
title: Occurrence Download

description: A dataset containing 15954 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Bombus Latreille, 1802",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15954 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027338-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grphum
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Didymodon vinealis var. vinealis",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 170 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043045-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8ppoj
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Lutzomyia gomezi (Nitzulescu, 1931)"
 ]
}

 The dataset includes 489 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001470-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25976689
title: Raw tree-level and SHAP metadata

description: Metadata describing important variables contained in the raw tree-level and SHAP data.
DOI: 10.15468/dl.8s7aj9
title: Occurrence Download

description: A dataset containing 7850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-73.9859438999999952 40.5946458000000021, -73.9859438999999952 40.5959190700000008, -73.9859438999999952 40.5970944000000031, -73.9859438999999952 40.5988573899999992, -73.9859438999999952 40.5997388899999976, -73.9859438999999952 40.6015018800000007, -73.9859438999999952 40.6029710399999999, -73.9859438999999952 40.6044401999999991, -73.9843760300000071 40.6044401999999991, -73.9820241399999929 40.6044401999999991, -73.9802602200000052 40.6044401999999991, -73.9773203599999931 40.6044401999999991, -73.9749684699999932 40.6044401999999991, -73.9726165799999933 40.6044401999999991, -73.9700686999999988 40.6044401999999991, -73.9682067899999964 40.6044401999999991, -73.9653649199999990 40.6044401999999991, -73.9633070200000020 40.6044401999999991, -73.9605631999999957 40.6044401999999991, -73.9605631999999957 40.6022854300000020, -73.9605631999999957 40.6007183299999994, -73.9605631999999957 40.5990532799999997, -73.9605631999999957 40.5968005699999992, -73.9605631999999957 40.5946458000000021, -73.9618370900000031 40.5946458000000021, -73.9638949900000000 40.5946458000000021, -73.9652669299999985 40.5946458000000021, -73.9678148099999930 40.5946458000000021, -73.9694807300000008 40.5946458000000021, -73.9719306100000011 40.5946458000000021, -73.9731065600000051 40.5946458000000021, -73.9752624599999962 40.5946458000000021, -73.9781043199999999 40.5946458000000021, -73.9800642299999964 40.5946458000000021, -73.9827101000000056 40.5946458000000021, -73.9839840399999957 40.5946458000000021, -73.9859438999999952 40.5946458000000021))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 7850 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094943-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hu3kan
title: Occurrence Download

description: A dataset containing 67649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-93.7037054000000040 41.5479946999999967, -93.7037054000000040 41.5518226200000029, -93.7037054000000040 41.5608704400000022, -93.7037054000000040 41.5667863199999985, -93.7037054000000040 41.5709622400000001, -93.7037054000000040 41.5761821299999994, -93.7037054000000040 41.5827939999999998, -93.6932656999999978 41.5827939999999998, -93.6856099299999983 41.5827939999999998, -93.6800420900000006 41.5827939999999998, -93.6720383199999986 41.5827939999999998, -93.6668184699999955 41.5827939999999998, -93.6602066699999938 41.5827939999999998, -93.6535948599999983 41.5827939999999998, -93.6473310399999974 41.5827939999999998, -93.6407192399999957 41.5827939999999998, -93.6354993900000068 41.5827939999999998, -93.6247117000000060 41.5827939999999998, -93.6247117000000060 41.5751381500000008, -93.6247117000000060 41.5699182600000015, -93.6247117000000060 41.5653943499999983, -93.6247117000000060 41.5580865000000017, -93.6247117000000060 41.5542585700000018, -93.6247117000000060 41.5479946999999967, -93.6302795400000036 41.5479946999999967, -93.6407192399999957 41.5479946999999967, -93.6490709899999985 41.5479946999999967, -93.6588147100000015 41.5479946999999967, -93.6682104300000020 41.5479946999999967, -93.6751702300000062 41.5479946999999967, -93.6852619400000037 41.5479946999999967, -93.6915257499999967 41.5479946999999967, -93.6988335399999954 41.5479946999999967, -93.7037054000000040 41.5479946999999967))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 67649 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094941-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke5vph
title: Occurrence Download

description: A dataset containing 47594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.64844 24.52713,-102.30469 6.3153,-84.02344 -43.06889,-45.35156 -46.07323,-47.46094 22.59373,-89.64844 24.52713))",
 "HasCoordinate is true",
 "TaxonKey is Bufonidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 47594 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001470-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14759797
title: Cecelia: a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour

description: This repository contains the source image data from Figures 2 and 4 of our paper (https://doi.org/10.1038/s41467-025-57193-y).
description: With the ever-increasing complexity of microscopy modalities, it is imperative to have computational workflows that enable researchers to process and perform in-depth quantitative analysis of the resulting images. However, workflows that allow flexible, interactiveand intuitive analysis from raw images to analysed data are lacking for many experimental use-cases. Notably, integrated software solutions for analysis of complex 3D and live cell images are sorely needed. To address this, we present Cecelia, a toolbox that integrates various open-source packages into a coherent data management suite to make quantitative multidimensional image analysis accessible for non-specialists. We describe the application of Cecelia to several immunologically relevant scenarios and the development of an unbiased approach to distinguish dynamic cell behaviours from live imaging data. Cecelia is available as asoftware package with a Shiny app interface (https://github.com/schienstockd/cecelia). We envision that this framework and its approaches will be of broad use for biological researchers.