cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3567144.v1
title: Appendix A. One-dimensional functional richness (FRIs).

description: One-dimensional functional richness (FRIs).
DOI: 10.6084/m9.figshare.24760764.v3
title: SK_Fire Data_Guoqiang Ding et al.xlsx

description: charcoal data from the sediment of Lake Sasikul to reconstruct the fire activity on the Pamir Plateau over the past 2500 years
DOI: 10.6084/m9.figshare.28640057.v1
title: road.txt

description: 轨迹数据，包括路网数据和轨迹数据，轨迹点数据包括经纬度信息，标记数据点经纬度信息等
DOI: 10.6084/m9.figshare.24777990.v2
title: spectrogram_Cz_all_subjects.zip

description: EEG recordings from 14 patients undergoing an infusion of the drug propofol. This dataset contains the computed spectrogram of each patient from the Cz recording electrode. Time is encoded relative to the moment of loss of consciousness, i.e. LOC occurs at 0 s.
DOI: 10.6084/m9.figshare.25415965.v2
title: Supplementary Data Public-Private Partnerships as Catalysts for Sustainable Tourism Amidst Global Challenges in Indonesia

description: This investigation delves into the effectiveness of Public-Private Partnerships (PPPs) in propelling sustainable tourism development within the Lagoi Tourism Area of Bintan Regency, Indonesia. It underscores the instrumental role of PPPs in augmenting regional income whilst mitigating global challenges, notably the Covid-19 pandemic. The research endeavors to bridge the extant literature gap by scrutinizing the influence of PPPs on economic augmentation, societal benefits, cultural conservation, and environmental sustainability within the context of Southeast Asia’s tourism industry. Employing a descriptive qualitative methodology, complemented by purposive and snowball sampling strategies, the study aggregates data from pivotal stakeholders engaged in the development of coastal tourism. The findings elucidate that PPPs efficaciously amalgamate economic, social, and environmental objectives, thereby substantially contributing to economic development, infrastructural advancement, and community empowerment. Nonetheless, the research identifies existing impediments, including ambiguities in Memoranda of Understanding (MoUs) and deficiencies in stakeholder communication. The study accentuates the resilience of PPPs in navigating crises and transitions, advocating for the enhancement of governance frameworks, the equitable distribution of income, and the amplification of community involvement. It posits the refinement of PPP constructs to cultivate equitable, efficient, and sustainable tourism development, emphasizing the imperative for improved communication among stakeholders and infrastructural progressions to address forthcoming challenges.
DOI: 10.15468/dl.9hu32g
title: Occurrence Download

description: A dataset containing 2724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Melolontha melolontha (Linnaeus, 1758)"
 ]
}

 The dataset includes 2724 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009440-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.10248368.v1
title: Differential Expressions of microRNAs and Transfer RNA-derived Small RNAs: Potential Targets of Choroidal Neovascularization

description: <b>Purpose</b>: Choroidal neovascularization (CNV) is one of the major clinical characteristics of neovascular age-related macular degeneration (AMD). Small non-coding RNAs, such as microRNAs (miRNAs) and transfer RNA-derived small RNAs (tsRNAs) play key roles in diverse biological functions. The purpose of the study was to investigate the roles and possible functions of the miRNAs and tsRNAs in CNV. <b>Methods</b>: The mouse model of laser-induced CNV was conducted by laser photocoagulation. The expression profiles of miRNAs and tsRNAs were accessed by small RNA sequencing (RNA-Seq) in RPE-choroid-sclera complexes of mice in CNV group and control group. Selected altered miRNAs and tsRNAs were validated by qRT-PCR. Target genes were predicted by informatics analysis and intersected with the previous microarray study of altered mRNAs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were conducted to reveal the biological functions and signaling pathways with which these target genes are most enriched. <b>Results</b>: The results revealed that 79 miRNAs and 72 tsRNAs in total were significantly altered in the RPE-choroid-sclera complexes of CNV mice. GO analysis revealed that the altered target genes of the selected miRNAs most enriched in immune response, integral component of membrane and peptide binding, while the altered target genes of tsRNAs most enriched in regulation of immune system process, extracellular region, and core promoter binding. Moreover, KEGG pathway analysis demonstrated that altered target genes of miRNAs and tsRNAs most enriched in hematopoietic cell lineage and nucleotide-binding oligomerization domain (NOD)-like receptor signaling pathway, respectively. <b>Conclusions</b>: Our study identified differential expressions of miRNAs and tsRNAs in CNV model, and these altered miRNAs and tsRNAs might be novel potential targets in treating CNVs in patients with neovascular AMD.
DOI: 10.6084/m9.figshare.13546481.v1
title: Supplementary Material for: Efficacy and Safety of Lenvatinib Therapy for Unresectable Hepatocellular Carcinoma in a Real-World Practice in Korea

description: <b><i>Background:</i></b> Lenvatinib has been recently approved as a first-line treatment option for patients with unresectable hepatocellular carcinoma (HCC) in Korea. We aimed to study the efficacy and safety of lenvatinib therapy in a real-world practice and to find prognostic factors related to survival and disease progression. <b><i>Methods:</i></b> A hospital-based retrospective study was conducted on 111 consecutive patients who had unresectable HCC and were treated with lenvatinib at Samsung Medical Center from October 2018 to March 2020. Efficacy was determined using the modified Response Evaluation Criteria in Solid Tumors (mRECIST) criteria in 111 patients who completed 1st tumor assessment. Safety was evaluated in 116 HCC patients including 5 patients who discontinued lenvatinib due to adverse events (AEs) before 1st tumor assessment using Common Terminology Criteria for AEs version 5.0. <b><i>Results:</i></b> A total of 111 patients with a median age of 59 years were analyzed during a median follow-up duration of 6.2 (4.4–9.0) months. The Kaplan-Meier estimate of overall survival was 10.5 months, and the median progression-free survival was 6.2 months. Based on mRECIST criteria, the objective response rate was 18.9% and disease control rate was 75.7%. AEs developed in 86/116 (74.1%) patients, and grade ≥3 AEs developed in 16/116 (13.8%) patients. Diarrhea, hand-foot skin rash, abdominal pain, hypertension, and anorexia were identified as the AEs with the highest frequencies of any grade. REFLECT eligibility criteria including tumor extent ≥50% liver occupation or inadequate bone marrow function and occurrence of anorexia were prognostic factors for survival, and occurrence of diarrhea was a favorable factor for disease progression. <b><i>Conclusion:</i></b> Lenvatinib therapy showed a favorable efficacy and safety in a real-world practice. The REFLECT eligibility criteria and specific AEs could be one of the prognostic markers.
DOI: 10.6084/m9.figshare.5640094.v1
title: test.cdf

description: x1234
DOI: 10.6084/m9.figshare.5701714.v1
title: Additional file 2: Table S1. of Locus-specific hypomethylation of the mouse IAP retrotransposon is associated with transcription factor-binding sites

description: Annotation and methylation levels of each IAP fragment. (XLSX 2426Â kb)
DOI: 10.6084/m9.figshare.12906746.v1
title: Supplementary Material for: First Trimester Screening for Common Trisomies and Microdeletion 22q11.2 Syndrome Using Cell-Free DNA: A Prospective Clinical Study

description: <b><i>Objectives:</i></b> The aims of the study were to assess the false-positive and uninformative test rate with first trimester cell-free DNA (cfDNA) screening for common trisomies and microdeletion 22q11.2 (22q11.2DS) and to examine women’s attitudes toward such an approach. <b><i>Methods:</i></b> This is a prospective study at the Prenatal Medicine Department of the University of Tübingen, Germany, at 11–13 weeks. In all pregnancies, a detailed ultrasound examination was carried out, followed by a cfDNA analysis for common trisomies and 22q11.2DS. In cases where the cfDNA analysis indicated 22q11.2DS, invasive prenatal diagnostic testing and parental testing were performed. After delivery, a detailed neonatal clinical examination was carried out including further genetic testing. Prior to counselling about the study, we asked the pregnant women who were potentially eligible for the study to anonymously report on their knowledge about 22q11.2DS. <b><i>Results:</i></b> A total of 1,127 pregnancies were included in the final analysis of the study. The first cfDNA test was uninformative in 15 (1.33%) pregnancies. In 10 (0.89%) cases, the test remained uninformative, even after the second blood sample. There were 3 (0.27%) cases with a positive cfDNA test for 22q11.2DS. In all, 983 women returned the anonymous questionnaire prior to study participation. Only 80 (8.1%) women responded that they felt familiar or very familiar with 22q11.2DS. <b><i>Conclusion:</i></b> The addition of 22q11.2DS in first trimester cfDNA screening for common trisomies is feasible. The uninformative test rate for common trisomies and 22q11.2DS is 0.9%, and the false-positive rate for 22q11.2DS is 0.3%. Awareness and education around 22q11.2DS should be improved.
DOI: 10.6084/m9.figshare.28029074.v1
title: Air quality Ouagadougou, Burkina Faso

description: Air quality measurements taken at the artisanal granite quarries of Yagma and Pissy, Ouagadougou, Burkina Faso
DOI: 10.6084/m9.figshare.13241978.v1
title: OC paper dataset

description: This data contains the minimum information to replicate the findings in our paper.
DOI: 10.6084/m9.figshare.20201981.v1
title: VenO vs ClbO Model.xlsm

description: This is an excel model about cost-effectiveness analysis on VenO vs. ClbO for treatment-naive CLL patients under the Dutch extented societal perspective.
DOI: 10.6084/m9.figshare.24105732.v1
title: Colonization routes uncovered in a widely introduced Mediterranean gecko, Tarentola mauritanica

description: Microsatellite dataset for loci in HWE
DOI: 10.6084/m9.figshare.26047771.v1
title: Low legume-grass seeding ratio combined with phosphorus fertilization promotes forage yield and soil quality in managed grasslands

description: Forage yield of 4 monocultures and 5 legume-grass mixtures at 3 study sites over 5 years, Cangzhou, Taiyian and Yinchuan, and soil quality parameters were included in this dataset. Legume and grass seeds were combined into one of five different legume:grass mixtures of 3:7, 4:6, 5:5, 6:4, or 7:3, and each legume:grass ratio received P fertilization at a rate of 0, 9, 18, or 27 kg P ha<sup>-1</sup> year<sup>-1</sup>. Forage yield of each plant community was measured at the initial flowering stage of alfalfa and all plants were mowed at 5 cm above ground by species, dried in an oven (65 ◦C, 48 h), and weighed. Soil sampling was collected to measure soil organic matter, total nitrogen, plant-available phosphorus, pH value, soil ezymatic activity and microbial biomass. Our results showed legume-grass mixture at seeding ratio of 3:7 with moderate P fertilization of 18 kg P ha<sup>-1</sup> year<sup>-1</sup> resulted in the highest forage yield among all monocultures and mixtures, for each of the three sites, with persistent and consistent transgressive overyielding. Moreover, significantly greater soil organic matter, total nitrogen, enzymatic activity, and microbial biomass were also observed in the 3:7 mixture, compared with monoculture or other seeding ratios.The file named as Forage yield at 3 sites supplied total forage yield of 4 monocultures and 5 legume-grass mixtures at each of study sites, Cangzhou, Taiyuan and Yinchuan, over 2016-2020. <i>Ms</i>, <i>Ov</i>, <i>Dg</i>, and <i>Fa</i> mean monoculture of alfalfa, sainfoin, orchardgrass and tall fescue, respectively. LG means legume-grass seeding ratio. P0, P1, P2 and P3 mean phosphorus fertilization rate of 0, 9, 18, or 27 kg P ha<sup>-1</sup> year<sup>-1</sup>. The file named as Soil quality parameters supplied the results of soil nutrient, enzymatic activities, and microbial variables. MM means the treatment of mean monoculture. Best means the treatment of the best-performed monoculture. SOM, soil organic matter; TN, total nitrogen; AP, plant-available phosphorus; pH, pH-value; ACP, acid phosphatase; NR, nitrate reductase; UR, urease; SU, sucrose; MBC, soil microbial carbon; MBN, soil microbial nitrogen; PLFAs, phospholipid fatty acids; bacteria, bacterial PLFA; fungi, fungal PLFA.
DOI: 10.6084/m9.figshare.3362518.v1
title: Sas Datasets

description: Datasets produced by SAS as outcomes of the simulation study. Each zip-file contains the outcomes for a scenario. The "Pathist" dataset is the dataset containing the "Reference Disease Progression" of the superpopulation in the simulation study (N=50,000).<br>
DOI: 10.6084/m9.figshare.4308191.v1
title: Kirkegaard2017 - 16S rRNA gene amplicon survey of anaerobic digesters

description: RData file with OTUtables and metadata for a comprehensive survey of anaerobic digesters
DOI: 10.6084/m9.figshare.6953276.v1
title: DRX013192.bw

description: DRX013192.bw
DOI: 10.6084/m9.figshare.7916444.v1
title: gVCF_HG02026

description: 1000 Genomes gVCF mapped to hs37d5 for HG02026. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.25843399.v1
title: DCME MAGs 2023 (fasta)

description: 51 draft Metagenome Assembled Genomes (MAGs) from the DCME culture, in FASTA format, as assembled by hybridSPADES.Contig names correspond with NCBI accessions where appropriate (Assembly accession: JBAWSS000000000), but smaller contigs that were filtered from NCBI upload are also included in these bins, named DCM_000000XXXXXX.
DOI: 10.6084/m9.figshare.5128099.v1
title: Supplementary Material for: TIR-Domain-Containing Adaptor-Inducing Interferon-β (TRIF) Mediates Antibacterial Defense during Gram-Negative Pneumonia by Inducing Interferon-γ

description: <i>Klebsiella pneumoniae</i> is an important cause of Gram-negative pneumonia and sepsis. Mice deficient for TIR-domain-containing adaptor-inducing interferon-β (TRIF) demonstrate enhanced bacterial growth and dissemination during <i>Klebsiella </i>pneumonia. We show here that the impaired antibacterial defense of TRIF mutant mice is associated with absent interferon (IFN)-γ production in the lungs. IFN-γ production by splenocytes in response to <i>K. pneumoniae </i>in vitro was critically dependent on Toll-like receptor 4 (TLR4), the common TLR adaptor myeloid differentiation primary response gene (MyD88) and TRIF. Reconstitution of TRIF mutant mice with recombinant IFN-γ via the airways reduced bacterial loads in lungs and distant body sites to levels measured in wild-type mice, and partially restored pulmonary cytokine levels. The IFN-γ-induced, improved, enhanced antibacterial response in TRIF mutant mice occurred at the expense of increased hepatocellular injury. These data indicate that TRIF mediates antibacterial defense during Gram-negative pneumonia, at least in part, by inducing IFN-γ at the primary site of infection.
DOI: 10.6084/m9.figshare.14612148.v1
title: RNA-seq Data.xlsx

description: RNA-seq data for caspase-7 bound and input RNAs
DOI: 10.6084/m9.figshare.21257187.v2
title: 2020-2021_読書会に関するインタビュー回答.docx (2020-2021 interview result about reading groups)

description: Interview results (verbatim) analyzed in the paper " The Nature of Adult Reading Groups in Japan: A Study Focused on Social Science Reading Groups Based Grounded Theory".
DOI: 10.6084/m9.figshare.5129548.v1
title: Supplementary Material for: Cognitive Impairment in Transient Ischemic Attack Patients: A Systematic Review

description: <b><i>Background:</i></b> Although by definition a transient ischemic attack (TIA) lasts less than 24 h, many patients experience cognitive complaints beyond focal symptom resolution. However, their prevalence, causes and profile are unclear. We therefore performed a systematic review on cognitive impairment after TIA. <b><i>Summary:</i></b> Medline and Embase were searched for relevant studies. Risk of bias was assessed, and data synthesis was performed according to the severity of cognitive impairment. Thirteen studies were included, with considerable heterogeneity concerning methods and timing of cognitive testing. Confounding, detection bias and attrition were the main causes of a high risk of bias in several studies. The prevalence of post-TIA mild cognitive impairment ranged from 29 to 68%. Severe cognitive impairment was found in 8-22% of patients. Studies using a cognitive screening instrument and those performed shortly after TIA or several years later, reported the highest frequencies of impairment. Patients evaluated with a screening tool were substantially older than those who underwent a full neuropsychological assessment (weighted mean age difference 10.9 years). Based on limited data, the post-TIA cognitive profile showed prominent executive function deficits. Insufficient data refrained us from drawing conclusions on causality. The few studies that reported neuroimaging results found a minor correlation with cognitive impairment. <b><i>Key Messages:</i></b> Mild cognitive impairment is present in more than a third of the TIA patients and has a profile comparable with vascular cognitive impairment. Reported rates of post-TIA cognitive impairment are highly variable and higher frequencies are found with cognitive screening tools. Considerable heterogeneity and insufficient data limit further conclusions about potential causative factors.
DOI: 10.6084/m9.figshare.11897601.v1
title: OST disciplinary classification

description: Classification of WoS subject categories into 11 disciplines.
DOI: 10.6084/m9.figshare.20375139.v1
title: Codebook detect Sexism SPSS

description: Codebook for the analysis of the data set in SPSS
DOI: 10.6084/m9.figshare.28264199.v1
title: PPI raw data

description: raw data of PPI feature
DOI: 10.6084/m9.figshare.28514378.v2
title: topic-filtered-sa-app-all.json

description: This study utilizes topic modeling and sentiment analysis to explore potential factors leading to positive and negative user satisfaction.
DOI: 10.6084/m9.figshare.23792607.v1
title: A meta-analysis of hairy vetch as a previous cover crop for maize

description: This dataset contains the result of extracting data of maize yield and hairy vetch biomass from 23 papers around the globe. This dataset is relevant to i) quantify maize yield response with hairy vetch as previous crop, ii) assess hairy vetch influence on the yield of fertilized and non-N fertilized maize, and iii) explore the impact of tillage and environment factors on maize yield response to hairy vetch.<br>For more information related to this dataset or codes, please contact the corresponding author at: rodriguez.mariapia@inta.gob.ar<br>For cite the dataset, please use:Rodriguez, M.P., Vargas, J., Correndo, A., Carcedo, A., Carciochi, W., Sainz Rozas, H., Barbieri, P., Ciampitti, I. 2023. A meta-analysis of hairy vetch as a previous cover crop for maize. figshare https://doi.org/10.6084/m9.figshare.23792607
DOI: 10.6084/m9.figshare.6008273.v1
title: PHENOMENOLOGICAL APPROACHES TO STUDY LEARNING IN THE TERTIARY LEVEL CHEMISTRY LABORATORY

description: Despite the widespread notion amongst chemistry educators that the laboratory is essential to learn chemistry, it is often a neglected area of teaching and, arguably, of educational research. Research has typically focused on secondary education, single institutions, and isolated interventions that are mostly assessed quantitatively. It has also honed in on compartmentalised features instead of searching understanding of broader aspects of learning through experimentation. This paper contends there is a gap in subject specific, tertiary level research that is comprehensive and learning-centred instead of fragmented and instruction-based. A shift in focus requires consideration of methodological approaches that can effectively tackle the challenges of researching complex learning environments. This paper reckons qualitative approaches, specifically phenomenology, are better suited for this purpose. To illustrate this potential, it summarises an exemplar phenomenological study that investigated students’ experience of change in instructional style from an expository (traditional) laboratory program to one that was cooperative and project-based (reformed). The study suggests the experience was characterised by a transition from a learning environment that promoted mindless behaviour to one in which students were mindfully engaged in their learning. Thus, this work puts forth the use of Mindfulness Theory to investigate and support design of laboratory experiences.
DOI: 10.6084/m9.figshare.19258574.v1
title: Supplementary Material for: Characteristics and visual prognosis of pediatric open globe injury in Shanghai, China

description: Introduction To describe the characteristics of open globe injury and the relationship between the complications and visual outcomes in children with this type of injury. Methods This was a retrospective chart review of 1664 children, under the age of 16 years, who were hospitalized for open globe injury between January 1, 2007, and December 31, 2015. Each patient’s age, sex, cause and agent of injury, complications, visual acuity, and classification of ocular trauma were collected for review and analysis. Results The mean age was 5.6 ± 3.4 years. Right eyes were particularly vulnerable to injury (right eye:left eye ratio = 1.2:1). Traumatic cataract was the most common complication. The average initial and final best-corrected visual acuity (BCVA) were logMAR 2.04 ± 0.78 and logMAR 1.74 ± 0.88, respectively. Logistic regression analysis showed that hyphema (OR = 1.850), iris prolapse (OR = 1.702), vitreous hemorrhage (OR = 9.703), retinal detachment (OR = 11.938), endophthalmia (OR = 5.377), intraocular foreign body (OR = 3.346), and initial visual acuity &lt; 0.05 (OR = 9.017) were risk factors for visual acuity &lt; 0.05 at hospital discharge. Conclusion Open globe injury was most frequent in preschool children and boys. Right eyes were more vulnerable than left eyes. Poor visual outcomes were associated with hyphema, iris prolapse, vitreous hemorrhage, retinal detachment, endophthalmia, intraocular foreign body, and an initial visual acuity &lt; 0.05.