cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tjg65u
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.72168 -34.03149,-70.72334 -34.00384,-70.72151 -33.98939,-70.71692 -33.96351,-70.69444 -33.9304,-70.68416 -33.92321,-70.8711 -33.9208,-70.88559 -34.02775,-70.72168 -34.03149))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 982 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025780-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9a63x
title: Occurrence Download

description: A dataset containing 7523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aegilops cylindrica Host)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7523 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010351-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb389j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 -7.1504,17.9648 -7.1504,17.9648 -16.1504,26.9648 -16.1504,26.9648 -7.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010352-250525065834625/datasets/export for details.
DOI: 10.15468/dl.j5fywm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex acetosella L.",
 "Country is North Macedonia"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010353-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/3j8p-dc32
title: "RoadSense: Mapping road surface using crowdsource data"

description: "The RoadSense dataset is collected to detect and map road surface anomalies using smartphone inertial sensors. The objective is to enable scalable, low-cost road surface condition monitoring by leveraging widely available mobile devices. RoadSense comprises synchronized data from three streams: (i) mobile phone sensors including gyroscope, accelerometer, and GPS; (ii) vehicle telemetry data from the CAN bus via the OBD-II port; and (iii) front-facing video recordings of the road surface. The mobile sensor data is intended for anomaly detection and mapping; video recordings serve as visual ground truth for labeling surface defects such as speed bumps, potholes, and cracks, while CAN bus data provides a supplementary reference for verifying anomalies influenced by vehicle dynamics (e.g., acceleration). The dataset enables reproducible evaluation of road surface monitoring models, facilitates the development of lightweight mobile sensor-based anomaly detection techniques, and supports future fusion with visual models for ground truth validation."
DOI: 10.15468/dl.a92jd8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styloniscidae",
 "Year 2011-2013",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049847-250811113504898/datasets/export for details.
DOI: 10.6084/m9.figshare.20304039.v2
title: Long-term effects of artificial nighttime lighting and trophic complexity on plant biomass and foliar carbon and nitrogen in a grassland community

description: Long-term field experiment dataset. Artificial ecosystems (‘mesocosms’) of grassland communities alone or in combination with invertebrate herbivores and predators were exposed to light treatments. Plant biomass, foliar C and N were determined for individual species. <br> <br>
DOI: 10.6084/m9.figshare.2064357.v1
title: Repeated local emergence of carbapenem resistant Acinetobacter baumannii in a single hospital ward

description: Supplementary table as published in <em>Microbial Genomics</em> in the following article: 'Repeated local emergence of carbapenem resistant Acinetobacter baumannii in a single hospital ward' [DOI:10.1099/mgen.0.000050]
DOI: 10.6084/m9.figshare.21828547.v2
title: Dataset from The island biogeography of human population size

description: For decades, biogeographers have sought a better understanding of how organisms are distributed among islands. However, the island biogeography of humans remains largely unknown. Here, we investigate how human population size varies among 486 islands at two spatial scales. At a global scale, we tested whether population size increases with island area and declines with island elevation and nearest mainland, as is common in non-human species, or whether humans escape such biogeographic constraints. At a regional scale, we tested whether population sizes vary among islands within archipelagos according to the positioning of different cultural source pools. Results illustrate that on a global scale, human populations increased in size with island area, similar to non-human species, yet they did not decline in size with elevation and distance to nearest mainland. At a regional scale, human population size often varied among islands within archipelagos relative to the location of different cultural source pools. Despite broad-scale similarities in the geographical distribution of human and non-human species among islands, results from this study indicate that the island biogeography of humans may also be influenced by archipelago-specific social, political and historical circumstances.
DOI: 10.6084/m9.figshare.25466188.v10
title: Robust Statistical Techniques for Operational Maintenance of the 10.7 cm Solar Radio Flux

description: Contains Python code for using Feature Ordering by Conditional Independence and Generalized Additive Models to reconstruct the F10.7 solar index across gaps of various length.
DOI: 10.6084/m9.figshare.4621963.v3
title: Data and code to describe Carlia johnstonei and C. triacantha

description: Input files for analysis with BPP, StarBEAST2 and SNAPP for species delimitation with genetic data as well code and raw data for Morphological analysis.
DOI: 10.17632/fwxyptyjm3
title: Data for: A Survey of Dog Owners’ Perceptions on the Use of Psychoactive Medications and Alternatives for the Treatment of Canine Behavior Problems

description: Raw Data from Survey Results - for interpretation see manuscript. Data were analyzed using SPSS software. In addition to descriptive statistics, associations between comfort level with various products and owners’ personal histories of taking psychoactive medications were analyzed using non-parametric t-tests (Mann-Whitney U [U]) and correlation calculations (Spearman’s Rank Correlation [S]). All tests were 2-tailed, and significance level (α) was set at p=0.05.
DOI: 10.17632/hx4m73v2sf
title: LegitPhish Dataset

description: The dataset contains 101,219 URLs and 18 features (including the label). Here's a description of each attribute: Phishing (0): 63,678 URLs

Legitimate (1): 37,540 URLs





These URLs have been sourced from the URLHaus database, scraped from many sites and other well-known repositories malicious websites actively used in phishing attacks. Each entry in this subset has been manually verified and is labeled as a phishing URL, making this dataset highly reliable for identifying harmful web content.

The legitimate URLs have been collected from reputable sources such as Wikipedia and Stack Overflow. These websites are known for hosting user-generated content and community discussions, ensuring that the URLs represent safe, legitimate web addresses. The URLs were randomly scraped to ensure diversity in the types of legitimate sites included.
Dataset Features:

URL: The full web address of each entry, providing the primary feature for analysis.
Label: A binary label indicating whether the URL is legitimate (1) or phishing (0).
Applications:

This dataset is suitable for training and evaluating machine learning models aimed at distinguishing between phishing and legitimate websites. It can be used in a variety of cybersecurity research projects, including URL-based phishing detection, web content analysis, and the development of real-time protection systems.

Usage:

Researchers can leverage this balanced dataset to develop and test algorithms for identifying phishing websites with high accuracy, using features such as URL structure, and class label attributes. The inclusion of both phishing and legitimate URLs provides a comprehensive basis for creating robust models capable of detecting phishing attempts in diverse online environments.

Feature Name Description
URL The full URL string.
url_length - Total number of characters in the URL.
has_ip_address - Binary flag (1/0): whether the URL contains an IP address.
dot_count - Number of . characters in the URL.
https_flag - Binary flag (1/0): whether the URL uses HTTPS.
url_entropy - Shannon entropy of the URL string – higher values indicate more randomness.
token_count - Number of tokens/words in the URL.
subdomain_count - Number of subdomains in the URL.
query_param_count - Number of query parameters (after ?).
tld_length - Length of the Top-Level Domain (e.g., "com" = 3).
path_length - Length of the path part after the domain.
has_hyphen_in_domain Binary flag (1/0): whether the domain contains a hyphen (-).
number_of_digits - Total number of numeric characters in the URL.
tld_popularity Binary flag (1/0): whether the TLD is popular.
suspicious_file_extension Binary flag (1/0): indicates if the URL ends with suspicious extensions (e.g., .exe, .zip).
domain_name_length - Length of the domain name.
percentage_numeric_chars - Percentage of numeric characters in the URL.
ClassLabel Target label: 1 = Legitimate, 0 = Phishing.
DOI: 10.17632/s9fjgyrbdd
title: Data: EM Fields of 3.7kW Wireless Charging in Electric Vehicle

description: This dataset is in support of my research paper 'ElectroMagnetic Fields in Wireless Charging of Electric Vehicles '.
Data of IEEE DataPort is uploaded here on request  on this open access.
DOI: 10.6084/m9.figshare.14217308.v1
title: Additional file 25: TableS9

description: Primer sequences used for the RT-PCR.
DOI: 10.6084/m9.figshare.14708883.v1
title: Data and analysis software to accompany the article "Moving objects by imagination? Amount of finger movement and pendulum length determine success in the Chevreul Pendulum Illusion"

description: This zip file contains all the data and analyses as described in the paper "Moving objects by imagination? Amount of finger movement and pendulum length determine success in the Chevreul Pendulum Illusion". The raw data files are saved in .csv format, the analysis software requires Matlab to run
DOI: 10.6084/m9.figshare.20973550.v1
title: Datasets for dissertation

description: The file contains all the data collected from the reviews and video content for analysis in the dissertation.
DOI: 10.6084/m9.figshare.21725531.v1
title: Liquid-Chromatography Mass Spectrometry Describes Post-Translational Modification of <i>Shewanella</i> Outer Membrane Proteins

description: LC-MS data for MtrCAB complexes from <i>Shewanella oneidensis</i> MR-1 and <i>Shewanella baltica</i> OS-185.LC-MS data for a soluble form of MtrC from <i>Shewanella oneidensis</i> MR-1 carrying a C-terminal Strep II tag.
DOI: 10.6084/m9.figshare.25436023.v1
title: HIV64148 Supplementary data

description: Figure S1. The MetaQUAST assessment evaluated contigs from the assemblers processing four median read-length FASTQ inputs: (A) 1,000-nt, (B) 2,000-nt, (C) 3,000-nt, and (D) 4,000-nt (Table 3). The x-axis displays the percentage sequence similarity obtained from a BLAST alignment with the corresponding reference genomes, while the y-axis represents the aligned length, indicating the longest continuous alignment between each contig and its reference genome. Dot sizes indicate the genome fraction (%Ref Aligned), calculated as the ratio of continuous aligned bases to the total reference genome length. Subplots above and beside each figure display histograms of the contig counts. Additionally, (E) shows the averaged genome fraction (%) of contigs from different long-read assembler pipelines. The complete data are available in Table S9.Figure S2. The average completeness of major HIV-1 open reading frames (ORFs) of the contigs generated from the assemblers analyzing FASTQ inputs of 4 median read lengths: (A) 1,000-nt, (B) 2,000-nt, (C) 3,000-nt, or (D) 4,000-nt.Figure S3. Contig size distribution of all assemblers processing the simulated FASTQ inputs of the 4 HIV-1 mixtures.Table S1. A list of experimental data and additional information. N/A: not applicable.Table S2. A statistical summary of runtime measurements taken from an assembly phase of the pipelines.Table S3. The memory usage and maximum CPU utilization of each assembler on three computational systems. The benchmark utilized 100 samples of two HIV-1 group M mixture with 2,000x coverage and 8,000-nt median read length.Table S4. The genome statistics of contigs generated from (A) Full genome laboratory isolate NL4-3, (B) Mpox propagated in a CV-1 cell line and (C) Mpox from pustular lesion, and (D) SARS-CoV-2 data by the selected assemblers.Table S5. The genome statistics of contigs generated from (A) Polio virus, (B) Hepatitis C virus (HCV), and (C) ZIKA Virus (ZIKV) data by the selected assemblers.Table S6. HIV Combinations for Data Simulation (Excel)Table S7. Characteristics of Simulated Samples Readlength Experiment (Excel)Table S8. Characteristics of Simulated Samples HIV mixture Experiment (Excel)Table S9. An Assembly Evaluation of HIV-1 Read Length Experiment (Excel)Table S10. An Assembly Evaluation of HIV-1 Subtype Mixtures Experiment (Excel)Table S11. Subtypes Recall Rates (Excel)Table S12. REGA Subtyping (Excel)Table S13. 5’ Half Genomes of NL4-3 Alignment Statistics (Excel)Table S14. Other Viruses Alignment Statistics (Excel)
DOI: 10.6084/m9.figshare.3558603.v1
title: Appendix A. Specialization metrics, land use responses, and species lists.

description: Specialization metrics, land use responses, and species lists.
DOI: 10.6084/m9.figshare.4499015.v1
title: Oasis_150-data.xlsx

description: This spreadsheet has the ID we used in OASIS database and the four measures we processed (sulcal measures, cortical thickness, cortical volume and subcortical volume). The authors confirm that all data related to the findings reported in the paper are fully available without restriction. The scans used in the research can be freely accessed via OASIS website (http://www.oasis-brains.org).
DOI: 10.6084/m9.figshare.6344888.v2
title: Fecal source identification using random forest

description: Script_RF_V6.R: Code to perform the source identification using random forest classification (creation/training of the classifiers + prediction of new samples).<br>RF_SourceIdentification_v6.RData: R-objects that contains the training/testing V6-databases used in the publication. <br>ClostridialesBacteroiales_v6.fa: File containing the sequences of the V6- Clostridiales/Bacteroidales amplicon sequence variants.<br><br>RF_training_outputs.zip: Folder containing the outputs of the random forest classifications performed to train the V6-classifiers.<br>Confusion_Matrix_V6.xlsx: Excel spreadsheet containing the confusion matrix for each V6-classifiers.<br><br>Comparison_V4V5_V6.zip (not peer-reviewed): Folder containing the files used to train/test/compare the classifiers.<br><br>
DOI: 10.17632/3vgdw9mmw8
title: Pressure and force for masonry cutting using flexible sensor enabled gloves

description: Using flexible sensor enabled gloves by masonry construction workers during the cutting of concrete slabs, concrete roadways, and granite slabs provides pressure and force data that can be used to drive human factors and ergonomic projects to improve worker health and safety.  Video of the process of cutting the masonry is provided.  Video of the pressure map and pressure data as a function of time for both the left and right hand during masonry cutting is provided.
DOI: 10.17632/dm89zpxgnt
title: Codes for the article “Predicting your children's returns to schooling”.

description: These codes help to replicate all the empirical analysis in the article: “Predicting your children's returns to schooling”, Portuguese Economic Journal, revise and resubmit,

This research used the The Beginning School Study, 1982--2002 (Log# 01293) dataset (made accessible in 2004, numeric data files). These data were collected by Karl L. Alexander and Doris R. Entwisle and are available through the Henry A. Murray Research Archive of the Institute for Quantitative SocialScience at Harvard University, Cambridge, Massachusetts (Producer and Distributor).
DOI: 10.17632/fm8g8k6js7
title: Real-World Video Datasets for Haze Removal

description: Description for the Video Dehazing Dataset 

The proposed dataset comprises 22 synthetic hazy videos, each carefully designed to simulate varying levels of haze intensity and diverse environmental conditions, such as different lighting, weather patterns, and scene complexities. Each video was converted into individual frames, resulting in a comprehensive dataset suitable for training and evaluating advanced video dehazing algorithms. 

This dataset was utilized to explore a novel machine-learning-based approach that leverages the UNet architecture in conjunction with a linear variance scheduler within the diffusion process framework. The frames serve as input to the dehazing model, enabling the system to learn spatiotemporal features effectively. 

The dataset provides a valuable benchmark for researchers focusing on video dehazing and restoration tasks, offering high-quality synthesized data to test innovative techniques in image enhancement and haze removal. It is particularly suited for algorithms requiring extensive frame-by-frame processing while preserving temporal consistency.
DOI: 10.17632/v88r5t5myz
title: Data/Software for "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse"

description: Contains data and software from the publication: "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse" published in the The Journal of Neuroscience (https://doi.org/10.1523/JNEUROSCI.0363-19.2019). The preprint to this data set has been published on bioRxiv (https://doi.org/10.1101/689653). In this study, we created a helper-dependent adenoviral vector (HdAd) to co-express cytoplasmic EGFP and a genetically encoded peroxidase marker (mito-APEX2) at the calyx of Held, an excellent model for deciphering regulatory mechanisms of presynaptic function. ABSTRACT: The calyx of Held, a large glutamatergic presynaptic terminal in the auditory brainstem undergoes developmental changes to support the high action-potential firing rates required for auditory information encoding. In addition, calyx terminals are morphologically diverse which impacts vesicle release properties and synaptic plasticity. Mitochondria influence synaptic plasticity through calcium buffering and are crucial for providing the energy required for synaptic transmission. Therefore, it has been postulated that mitochondrial levels increase during development and contribute to the morphological-functional diversity in the mature calyx. However, the developmental profile of mitochondrial volumes and subsynaptic distribution at the calyx of Held remains unclear. To provide insight on this, we developed a helper-dependent adenoviral vector (HdAd) that expresses the genetically encoded peroxidase marker for mitochondria, mito-APEX2, at the mouse calyx of Held. We developed protocols to detect labeled mitochondria for use with serial block face scanning electron microscopy to carry out semi-automated segmentation of mitochondria, high-throughput whole terminal reconstruction and presynaptic ultrastructure in mice of either sex. Subsequently, we measured mitochondrial volumes and subsynaptic distributions at the immature postnatal day 7 (P7) and the mature (P21) calyx. We found an increase of mitochondria volumes in terminals and axons from P7 to P21 but did not observe differences between stalk and swelling subcompartments in the mature calyx. Based on these findings, we propose that mitochondrial volumes and synaptic localization developmentally increase to support high firing rates required in the initial stages of auditory information processing. Data are sorted by the figures they appear in. Media (movies and 3D models) and custom-written software are located in separate folders.
DOI: 10.6084/m9.figshare.10668404.v2
title: Experimental 16s dataset published in Multiple elements of soil biodiversity drive ecosystem functions across biomes | Nature Ecology & Evolution

description: Microcosm 16s dataset published in Multiple elements of soil biodiversity drive ecosystem functions across biomes | Nature Ecology & Evolution
DOI: 10.6084/m9.figshare.14646747.v1
title: Release of VOCs

description: Table displaying the counts of detected compounds from headspace samples taken from diapausing <i>H. halys</i> after exposure to consepcific compounds.
DOI: 10.6084/m9.figshare.2059809.v3
title: Benchmarking PM7 / PM7-MD for up to 16 processor cores / threads per job

description: These figures investigate scalability of PM7/PM7-MD (note that scalability of PM7-MD by 99% depends on the scalability of MOPAC2012 by James Stewart (Stewart Computational Chemistry).<br><br>(a) Number of PM7-MD time-steps per hour vs. number of processor cores / number of threads.<br>(b) Speed-up coefficient vs. number of processor cores / number of threads.<br><br>Conclusion: A good scalability is observed up to 4 cores per job. From 4 to 8 cores, the observed performance increase is very poor. Beyond 8 cores, the performance of the code suffers clearly.<br>
DOI: 10.6084/m9.figshare.22817633.v1
title: OCP10k

description: OCP 10 dataset https://github.com/Open-Catalyst-Project/ocp/blob/main/MODELS.md#is2re-models <br> from jarvis.core.atoms import Atoms from jarvis.core.specie import atomic_numbers_to_symbols from ocpmodels.datasets import SinglePointLmdbDataset from jarvis.db.jsonutils import dumpjson from collections import defaultdict # dataset = SinglePointLmdbDataset({"src": "/wrk/knc6/oc/ocp/data/is2re/10k/train/data.lmdb"}) train = SinglePointLmdbDataset( {"src": "ocp/data/is2re/10k/train/data.lmdb"} ) val = SinglePointLmdbDataset( {"src": "ocp/data/is2re/all/val_id/data.lmdb"} ) test = SinglePointLmdbDataset( {"src": "ocp/data/is2re/all/test_id/data.lmdb"} ) print("n_train=", len(train)) print("n_val=", len(val)) print("n_test=", len(test)) <br>