cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29090936.v3
title: The Theory of Almost Everything

description: The Theory of Almost Everything
DOI: 10.6084/m9.figshare.5677861.v1
title: S1 Dataset.zip

description: Algorithm in the paper is applicable to point clouds. More point-cloud models with the computed SDFs are in S1 Dataset.zip.
DOI: 10.17632/d25nwpg3nd
title: Enhancing gene regulatory networks inference through hub-based data integration

description: One of the main research topics in computational biology is Gene Regulatory Network (GRN) reconstruction that refers to inferring the relationships between genes involved in regulating cell conditions in response to internal or external stimuli. To this end, most computational methods use only transcriptional gene expression data to reconstruct gene regulatory network, but recent studies suggest that gene expression data must be integrated with other types of data to obtain more accurate models predicting real relationships between genes. In this study, a diffusion-based method is enhanced to integrate biological data of network types besides structural prior knowledge. The Random Walk with Restart algorithm (RWR) with an emphasis on hub nodes is executed separately on each network, and then jointly optimizes low-dimensional feature vectors for network nodes by diffusion component analysis. Next, these feature vectors are used to infer gene regulatory networks. Fourteen centrality measures are studied for the detection of hub nodes to be used in the RWR algorithm, and the best centrality measure having the greatest effect on the improvement of gene network inference is selected. A case study for the Saccharomyces cerevisiae and E. coli networks shows that using the proposed features in comparison with gene expression data alone results in 0.02 to 0.08 units improvement in Area Under Receiver Characteristic Operator (AUROC) criteria across different gene regulatory network inference methods. Furthermore, the proposed method was applied to the esophageal cancer data to infer its gene regulatory network. The proposed framework substantially improves accuracy and scalability of GRN inference. The fused features and the best centrality measure detected can be used to provide functional insights about genes or proteins in various biological applications. Moreover, it can be served as a general framework for network data and structural data integration and analysis problems in various scientific disciplines including biology.
DOI: 10.6084/m9.figshare.19333667.v1
title: Murray Global Intertidal Change Classification v1.1 (1984-2016)

description: This dataset contains global maps of tidal flat ecosystems produced via a supervised classification of 707,528 Landsat Archive images. Each pixel was classified into tidal flat, permanent water or other with reference to a globally distributed set of training data. This product depicts tidal flat ecosystems around the global coastline. Pixels classified as tidal flat in the analysis represent several types of tidal flat ecosystems, including unconsolidated fine-grain sediments (tidal mudflats), unconsolidated coarse-grain sediments (tidal sand flats), and consolidated sediments, organic material or rocks (wide tidal rock-platforms), while excluding spectral signatures indicating the presence of vegetation dominated intertidal ecosystems such as mangroves and vegetated marshes. The analysis aimed to identify pixels that are subject to regular tidal inundation, and therefore may also include other intertidal systems where intertidal dynamics are observable.
DOI: 10.6084/m9.figshare.26308693.v1
title: Edge Computing Architecture dataset

description: Dataset generated for creating the edge computing architecture for the performing the simulation in EdgeSimpy.
DOI: 10.6084/m9.figshare.3394744.v1
title: Transcend Home.pdf

description: This is a mind map from 11/7/14 one full home automation powered by AI
DOI: 10.6084/m9.figshare.6964715.v1
title: Negoro-Cartilage_processed data.xlsx

description: Focal and degenerative lesions of articular cartilage greatly reduce the patient’s quality of life. Various therapies including surgical treatment have been developed, but a definitive therapy is not yet known. Several cell therapy products have already been developed and are available in the market. In this study, we examined the clinical research trends related to cell therapy products in the cartilage repair field based on data obtained from the ClinicalTrial.gov website. Although this website does not provide comprehensive results of clinical trials, it offers information on prospective clinical trials, including work in progress, and thus allows for chronological analysis of the data. We selected 203 studies related to the field of cartilage regeneration from ClinicalTrial.gov. The results showed a shift in the clinical translational trend in utilized cells from cartilage- and bone marrow- to adipose tissue-based cells. Whereas the studies that used cartilage as the cell source included many Phase III trials, fewer studies using bone marrow and adipose tissue cells progressed to Phase III, suggesting that most clinical developments using the latter sources have not been successful so far. One product covered the entire period from the start of Phase I to the completion of Phase III, with a time to completion of more than 100 months. Translational trends in autologous chondrocyte implantation were also discussed. The use of ClinicalTrials.gov as the sole data source can yield a perspective view of the global clinical translational trends, which has been difficult to observe up to this point.
DOI: 10.17632/ttfsr5drtc
title: E-Data2 Data Envelopment Analysis to Determine Reliability Targets for Power Distribution Systems

description: This is Edata2 for the Data Envelopment Analysis to Determine Reliability Targets for Power Distribution Systems paper. This Edata includes more detailed results for the main paper to help other researchers replicate the method.
DOI: 10.17632/xx9b9bkzy7
title: Supplemental Table 1. Patient Characteristics: Open Label and Randomized Double Blind Phase I/II Trial

description: Supplemental Table 1. Patient Characteristics: Open Label and Randomized Double Blind Phase I/II Trial
DOI: 10.6084/m9.figshare.12489752.v1
title: Supplementary Material for: Docetaxel-Induced Peripheral Neuropathy in Breast Cancer Patients Treated with Adjuvant or Neo-Adjuvant Chemotherapy

description: <b><i>Background:</i></b> Docetaxel-induced peripheral neuropathy (PN) is typically manifested as sensory and motor neuropathy. This study aimed to investigate the incidence, duration, and risk factors of sensory and motor PN and their impact on health-related quality of life (HRQOL) among breast cancer (BC) patients during the first year since starting docetaxel-based chemotherapy. <b><i>Methods:</i></b> We reported a secondary analysis of longitudinal data on docetaxel-induced PN and HRQOL among 127 BC patients. <b><i>Results:</i></b> Cumulative incidence rates of motor and sensory PN were 31.5 and 21.3%, while the median durations of motor and sensory PN were 6 and 13 weeks. A consistently significant risk factor for both PNs was a cumulative docetaxel dose of &gt;300 mg/m<sup>2</sup>. A significant interaction between sensory PN and time was found for physical and social functioning, while a significant motor PN and time interaction effect was identified for physical functioning only. <b><i>Conclusions:</i></b> Motor PN was more common than sensory PN in BC patients treated with docetaxel. Both types of PN had a significant impact on physical functioning.
DOI: 10.6084/m9.figshare.12571283.v2
title: Data output from the probit regression analysis to determine the toxicity of Naja ashei venom and vincristine sulphate

description: This data set contains the following :<br>1. Summary output tables of the probit regression model to determine the 24, 48, and 72-hour toxicities of Naja ashei venom in brine shrimp (MS Excel 2013)<br>2. Summary output table of the probit regression model to determine the 24, 48, and 72-hour toxicity of vincristine sulphate in brine shrimp (MS Excel 2013)<br><br>
DOI: 10.17632/5h99xn33r5
title: Análisis estadístico de datos de la prueba Lecdis: Evaluación diagnóstica de la lectura académica disciplinar en el nivel universitario

description: Este conjunto de datos proviene de la aplicación de la Prueba Lecdis, un innovador instrumento diseñado para la evaluación diagnóstica de la lectura académica disciplinar a nivel universitario. El foco de esta evaluación fue una selección de textos académicos del área de anatomía humana, pues lo que se pretendía era evaluar lectura disciplinar pertinente a las carreras de salud que cursaba la población estudiantil seleccionada. El conjunto de datos consta de 1264 observaciones y 46 variables distintas, que representan los resultados obtenidos por estudiantes universitarios de diversas carreras relacionadas con la salud. Estas variables proporcionan una visión integral de los patrones de rendimiento y características demográficas de los participantes: - Marca temporal: Registra la fecha y hora específicas en que cada estudiante completó la evaluación. Esta variable es crucial para comprender el contexto temporal de los datos. - Puntuación: Refleja el número de respuestas correctas de cada estudiante, ofreciendo una medida directa de su rendimiento en la evaluación. - Carrera: Indica la especialización académica de cada participante, lo cual es esencial para analizar los datos en relación con áreas específicas de estudio. - Sede: Señala la ubicación de la universidad donde estudia el participante, proporcionando una perspectiva geográfica que puede influir en el análisis. - Sexo y Edad: Estas variables demográficas (sexo del participante y edad en años) son fundamentales para realizar análisis estadísticos segmentados y comprender las diferencias en el rendimiento por grupos demográficos. - Ítems del Examen: Las restantes 40 variables corresponden a los ítems específicos del examen Lecdis, permitiendo un análisis detallado del rendimiento en cada aspecto de la evaluación. Este conjunto de datos ofrece una oportunidad única para investigar patrones y tendencias en la lectura académica disciplinar entre estudiantes universitarios en el ámbito de la salud. Es ideal para educadores, investigadores y formuladores de políticas interesados en mejorar la calidad y efectividad de la educación universitaria en disciplinas relacionadas con la salud.
DOI: 10.6084/m9.figshare.21585567.v1
title: Round 1 - Primary school literature scores

description: This dataset contains literature scores of grade 2 primary school students in 2017.
DOI: 10.6084/m9.figshare.8080790.v1
title: Killer shrimp preferences

description: Data for Experiments 1-3Experiment 1. Choice of zebra mussel density Experiment 2. Preference for zebra mussel over an artificial substrate<br> Experiment 3. Chemical attraction to zebra mussel <br>
DOI: 10.6084/m9.figshare.9785243.v2
title: Metadata record for: A data set of global river networks and corresponding water resources zones divisions

description: This dataset contains key characteristics about the data described in the Data Descriptor A data set of global river networks and corresponding water resources zones divisions. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.17632/c6dwkxtsyh
title: Data for: Permutation and Randomization Tests for Network Analysis

description: Paper abstract: Permutation tests have a long history in testing hypotheses of independence between nodal attributes and network structure, though they are often thought less informative than parametric modeling techniques. In this paper, we show that when the nodal attribute is random assignment to a treatment condition, permutation tests provide a valid test of the causal effect of treatment. We discuss existing test statistics used in network permutation tests and propose several new statistics. In simulations we find that these statistics perform well compared to parametric tests and that specific statistics can be selected to provide power against common network models. We illustrate the methods with gene-wide association study performed on randomized study participants and an observational study of gender membership on Scandinavian corporate boards. This replication archive contains all materials to recreate analysis, figures, and the paper itself. See README.txt for system requirements.
DOI: 10.17632/gcdpsxd6d5
title: Landscape of human factors for SARS-CoV-2 infection identified by a genome-wide RNAi screening

description: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can cause acute respiratory distress and multiorgan failure. Finding human host factors that are essential for SARS-CoV-2 infection could facilitate formulation of treatment strategies. Herein, using a human kidney cell line—HK-2—that is highly susceptible to SARS-CoV-2 infection, we performed a genome-wide RNAi screening and identified virus dependency factors which play regulatory roles in biological pathways linked to clinical manifestations that are associated with the SARS-CoV-2 infection.
DOI: 10.17866/rd.salford.7959089.v1
title: Postural supports at night ‘reduce pain and depression’ in older people

description: Article in the Access and Mobility Professional Journal<br>
DOI: 10.6084/m9.figshare.15029481.v1
title: Marketed pharmaceutical preparations infomation

description: Marketed pharmaceutical preparations infomation
DOI: 10.6084/m9.figshare.24186900.v1
title: Data for "Finding spatially variable ligand-receptor interactions from spatial transcriptomes"

description: Datasets for the paper "Data for "Finding spatially variable ligand-receptor interactions from spatial transcriptomes". The datasets include input h5ad files and output folders.
DOI: 10.6084/m9.figshare.24589233.v1
title: Procambarus_clarkia.finalGeneset20200330_updataID_updataChr.sort.gff.gz

description: Genome annotations for the red swamp crayfish <i>Procambarus clarkii</i>.
DOI: 10.6084/m9.figshare.29040857.v1
title: Raw data the chemical composition and in vivo antinociceptive activity and edema inhibition of <i>Calendula arvensis</i> in a mouse model.

description: This dataset presents integrated evidence on the therapeutic potential of <i>Calendula arvensis</i>, combining in vivo assessments of its anti-inflammatory and analgesic effects via oral syrup and topical cream formulations, together with phytochemical composition raw data
DOI: 10.6084/m9.figshare.6225182.v1
title: Fig.3. Plots of content variation of gas at 0.4m in vertical direction of gas injection-negative pressure.opj

description: Plots of content variation of gas at 0.4m in vertical direction of gas injection-negative pressure.opj
DOI: 10.6084/m9.figshare.899875.v1
title: MUTAG and ENZYMES DataSet

description: These are variants of the MUTAG and ENZYMES datasets as they are used in many graph kernel papers. These variants are extracted from the Matlab versions defined by Shervashidze et al. 2011. See http://jmlr.org/papers/v12/shervashidze11a.html
DOI: 10.6084/m9.figshare.8285918.v1
title: 1. NMVOC emissions by sectors in China for 1990-2017

description: NMVOC emissions by sectors and subcategories in China for 1990-2017
DOI: 10.17632/8rzc45vp77
title: Stability and biocompatibility of a Bionic Eye - Histology and immunohistochemistry data

description: Data related to: Implantation and long-term assessment of the stability and biocompatibility of a novel 98 channel suprachoroidal visual prosthesis in sheep

In Eggenberger et al., nine sheep of the Suffolk (N=2) and Dorper (N=7) breeds were implanted in the left eye with a suprachoroidal retinal stimulator (Bionic Eye) for durations up to 100 days. The surgical safety, implant stability and device biocompatibility were assessed.

All procedures were performed conducted in accordance with the Australian Code for the Care and Use of Animals for Experimental Purposes 8th edition (2013) and the ARVO standards for use of animals in ophthalmic research and approved by the Animal Care and Ethics Committee (ACEC) of UNSW Sydney (protocol number 14/155B) .

Animal identifier:
Animals were identified according to the experimental group to which they were assigned (duration of experiment 2 days, 1 month, 2 months and 3 months.
E.g.: 2D#1 was the first animal in the group implanted for a duration of 2 Days. 3M#3 was the third animal in the group implanted for 3 Months.

Heamatoxylin and eosin staining:
Sections were then stained with Harris Hematoxylin (7 min; prior to bluing in running tap water for 4 min) and eosin (4 min).

Fluorescence Immunohistochemistry:
10um paraffin sections. GFAP-Cy3 conjugate (mouse IgG; 1:800); cone photoreceptors: opsin-red/green (opsin R/G) (rabbit IgG; 1:500, 1:1000) (Merck Millipore) and macrophage/microglia: Iba1 (goat IgG; 1:200) (Abcam, USA).
Secondary antibodies to goat IgG, mouse IgG, or rabbit IgG, conjugated with Alexa-Fluor 488, 555, or 647 (Invitrogen, USA).
Nuclei: Hoechst 33258 (1:10,000)
Mounting in glycerol:PBS (80:20)
All images were captured using an LSM 700 Meta Confocal microscope system and ZEN Blue software (Carl Zeiss, Germany). Images were assembled in Photoshop CS software (Adobe Corporation, USA).

Iba1 immunoperoxidase and quantitative analysis:
4um paraffin sections. High pH buffer heat antigen retrieval (Target Retrieval Solution, S2367, DAKO®), blocking (Bloxall, SP6000, VectorLabs®), primary antibody (macrophage/microglia, clone Iba1, BioCare Medical®, rabbit polyclonal, 1:200), secondary (Envision K5007, DAKO®), chromogen ImmPACT Nova Red (SK4805, Vector Labs®), counterstained: haematoxylin (Whitlocks, VPDS Histo Lab Manual©, 2021). Negative controls processed identically with primary antibody omitted. 
Sections scanned with Aperio Versa (Leica Biosystems®, UK) at 40x.
Quantitative analysis using ImageScope™ Positive Pixel Count algorithm with the following parameters: hue value 0, hue width 0.4, colour saturation threshold 0.25, weak positive pixels (high) 160, positive pixels  (high) 140, strong positive pixels  (high) 120, strong positive pixels (low) 0, negative pixels  (high)  -1. Retinas  outlined manually in ImageScope™ .
DOI: 10.17632/95yysn7cns
title: Supplementary Data for the Mediation Effect of Personality Functioning 

description: This dataset supports the research article entitled ‘Supplementary Data for the Mediation Effect of Personality Functioning – Gender Differences, Separate Analyses of Depression and Anxiety Symptoms and Inferential Statistics of the Relationship Between Personality Functioning and Different Types of Child Maltreatment' (Freier et al., 2022). The data were collected from 2,510 participants. The data include participants’ socio-demographic variables (age, gender, level of education and personal income), and the raw data of the items answers as well as the sum scores for the Childhood Trauma Questionnaire, the Four-Item Public Health Questionnaire and the short version of the OPD Structure Questionnaire (OPD-SQS). A further description of the data can be found in the related article in Data in Brief.
DOI: 10.17632/jjjmw2bn4y
title: Data for paper on inverter clipping of oversized bifacial PV systems

description: This dataset contains sensor data (POA irradiance, diffuse irradiance, module temperature, inverter DC power, and inverter AC power) of a 5 kW Bifacial PV system located in Newark, DE, USA for specific weather conditions (sunny /cloudy days) and ground cover (black tarp, gravel, or white tarp). It also has a simulation file for System Advisor Model (SAM) software.
DOI: 10.6084/m9.figshare.22793570.v1
title: Food Price Volatility and Output Gap Datasets.xlsx

description: Datasets analysed to measure the pass-through effect of global food price volatility and South Africa’s CPI on the headline inflation of Zimbabwe.
DOI: 10.6084/m9.figshare.24464272.v1
title: Figure 3, 4_ Supplementary Table 2,3_ mosaic diagrams(condition intervention JMP)

description: The dataset for the article "The current utilization status of wearable devices in clinical research".Analyses were performed by utilizing the JMP Pro 16.10.The file extension "jrp" is a file of the statistical analysis software JMP, which contains both the analysis code and the data set.In case JMP is not available, a "csv" file as a data set and JMP script, the analysis code, are prepared in "rtf" format.JMP repot files used to create the figures(Figure 3 ,4 ) and tables(Supplementary Table 2,3) , including the csv dataset of JMP repot files and JMP scripts.<br>Figure 3. Mosaic diagram of conditionsSupplementary Table 2. Analysis of contingency table per conditionThe mosaic diagrams Condition20220903.jrpAnalysis by Model dataset The mosaic diagrams Condition.csvThe mosaic diagrams Condition.rtf<br>Figure 4. Mosaic diagram of interventionSupplementary Table 3. Analysis of contingency table for interventionThe mosaic diagrams Intervention20220903.jrpAnalysis by Model dataset The mosaic diagrams Intervention.csvThe mosaic diagrams Intervention.rtf<br>
DOI: 10.6084/m9.figshare.25678170.v1
title: NCFs, python package and sample script of new imaging condition for beamforming

description: NCFs of the array, python package and script used as examples in the paper of new imaging condition for beamforming.
DOI: 10.17632/b7y32swttp
title: CoVRP-PS testing data

description: Complete data results from testing, including Houston and Boston realistic network runs and sensitivity analysis on omega. Also included is the model files on tested networks.
DOI: 10.6084/m9.figshare.6217157.v1
title: Supplemental Dataset S3: Relative correlation heatmaps for splice-variants of genes with more than one transcript highly OXPHOS correlated across tissues.

description: Supplemental Dataset S3 of: Barshad et al (2018). Genome Research, 28(7): 952-967.
DOI: 10.25380/iastate.14454756.v1
title: Reliability Data: Field Failure-time Data

description: It is sometimes said that reliability field data is the “real reliability data” because they reflect actual reliability performance of a product or system. Reliability field data areobtained, most commonly, from warranty returns (combined with production/sales records to provide information on units that were not returned) and maintenance databases. For some products (e.g., medical devices), careful field tracking is done, providing detailed information about all units deployed into the field. Reliability field data are almost always multiply censored because many units had not failedat the time the data were analyzed. In addition to failure times, sometimes failure mode information is also available for units that have failed. Other complications like truncation also arise in some field reliability data sets.
DOI: 10.6084/m9.figshare.13077851.v1
title: activation energies.tsv

description: Values of activation energies collected from previous meta-analyses with the objective of depicting a general overview of the temperature sensitivity of biomass distribution and trophic control in food chains for various consumer-resource systems. We used the meta-analyses from Dell et al 2011, Burnside et al 2014 and Fussmann et al 2014, reporting activation energies for different biological rates and types of organisms. In these studies, activation energies are estimated by fitting the linearized Arrhenius equation to the log transformed biological rates.