cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13093694
title: Additional file 1 of Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)

description: Additional file 1: Table S1. The data of expression levels of 36 CmHsf genes in root, stem, cotyledon and true leaves. The results were calculated via the 2−ΔΔCt method. Table S2. Statistics for the number of cis-acting elements in the 36 CmHsf gene promoters. Table S3. The data of expression levels of 36 CmHsf genes in leaves under temperature stress. CK referred to the untreated plants at 25 °C. The data represented the expression levels of CmHsf genes at 6 h after cold stress (4 °C) and heat stress (38 °C). The results were calculated via the 2−ΔΔCt method. Table S4. The data of expression profiles of 36 CmHsf genes in true leaves under MeJA, ABA and SA treatments. CK referred to untreated plants in this figure. The data represented the expression levels of CmHsf genes at 10 h after the MeJA, ABA and SA treatments. The results were calculated via the 2−ΔΔCt method. Table S5. List of primer sequences used for the tissue-specific analysis of 36 CmHsf genes. Table S6. The coding sequence and protein sequence information for each of the CmHsfs.
DOI: 10.6084/m9.figshare.13093697.v1
title: Additional file 2 of Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)

description: Additional file 2: Figure. S1. Multiple sequence alignment analysis and the secondary structure elements of DBD in CmHsf proteins. Sequence alignments were performed using Clustal X 2.0. Different background colors indicated different amino acids. “*” meant that the amino acid sequences of different Hsf proteins are highly consistent. The secondary structure elements of DBD (α1-β1-β2-α2-α3-β3-β4) were shown above the alignment. The secondary structure was predicted by SOPMA secondary structure prediction software. Cylindrical tubes represented a-helices or β-sheets. Figure. S2. Detailed information about the 10 motifs identified in CmHsf proteins. The LOGOs of the protein motifs were also obtained with Multiple Expectation Maximization or Motif Elicitation (MEME, http://meme-suite.org/ ).
DOI: 10.6084/m9.figshare.13093694.v1
title: Additional file 1 of Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)

description: Additional file 1: Table S1. The data of expression levels of 36 CmHsf genes in root, stem, cotyledon and true leaves. The results were calculated via the 2−ΔΔCt method. Table S2. Statistics for the number of cis-acting elements in the 36 CmHsf gene promoters. Table S3. The data of expression levels of 36 CmHsf genes in leaves under temperature stress. CK referred to the untreated plants at 25 °C. The data represented the expression levels of CmHsf genes at 6 h after cold stress (4 °C) and heat stress (38 °C). The results were calculated via the 2−ΔΔCt method. Table S4. The data of expression profiles of 36 CmHsf genes in true leaves under MeJA, ABA and SA treatments. CK referred to untreated plants in this figure. The data represented the expression levels of CmHsf genes at 10 h after the MeJA, ABA and SA treatments. The results were calculated via the 2−ΔΔCt method. Table S5. List of primer sequences used for the tissue-specific analysis of 36 CmHsf genes. Table S6. The coding sequence and protein sequence information for each of the CmHsfs.
DOI: 10.6084/m9.figshare.13093724.v1
title: Additional file 2 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 2: Table S1. Table of GO terms enriched in Tsc2+/−/WT upregulated RNA and RPFs from Fig. 1D, E (padj
DOI: 10.6084/m9.figshare.13093727.v1
title: Additional file 3 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 3: Table S2. Table of GO terms enriched in wild-type DHPG/basal ranked list of RNA and RPFs expression changes from Supplemental Fig. 2 (padj
DOI: 10.6084/m9.figshare.13093733.v1
title: Additional file 5 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 5: Table S4. Table of anota2seq output for RNA, RPF, and TE expression changes for Tsc2+/−/WT. The delta tab has calculated expression changes (log2FC) for RNA, RPF, and TE. The total mRNA tab has analysis for RNA expression changes (log2FC). The translated mRNA tab has analysis for RPF expression changes (log2FC). The buffering tab has analysis for TE expression changes (log2FC) that likely leads to translational buffering. The translation tab has analysis for TE expression changes (log2FC) that likely leads to altered protein levels.
DOI: 10.6084/m9.figshare.13093724
title: Additional file 2 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 2: Table S1. Table of GO terms enriched in Tsc2+/−/WT upregulated RNA and RPFs from Fig. 1D, E (padj
DOI: 10.6084/m9.figshare.13093736
title: Additional file 6 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 6: Table S5. Table of anota2seq output for RNA, RPF, and TE expression changes for WT DHPG/Basal. The delta tab has calculated expression changes (log2FC) for RNA, RPF, and TE. The total mRNA tab has analysis for RNA expression changes (log2FC). The translated mRNA tab has analysis for RPF expression changes (log2FC). The buffering tab has analysis for TE expression changes (log2FC) that likely leads to translational buffering. The translation tab has analysis for TE expression changes (log2FC) that likely leads to altered protein levels.
DOI: 10.6084/m9.figshare.13093730
title: Additional file 4 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 4: Table S3. Table of DESeq2 output for RNA and RPF expression changes for Tsc2+/−/WT and WT DHPG/Basal comparisons. FMRP binding targets are indicated in the last column based on binding strength (stringent, high, low). Nontargets are indicated by nonclip. Overlapping mRNAs and RPF altered in Tsc2+/− and responsive to DHPG from Fig. 5 are listed.
DOI: 10.6084/m9.figshare.13093727
title: Additional file 3 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 3: Table S2. Table of GO terms enriched in wild-type DHPG/basal ranked list of RNA and RPFs expression changes from Supplemental Fig. 2 (padj
DOI: 10.6084/m9.figshare.13093736.v1
title: Additional file 6 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 6: Table S5. Table of anota2seq output for RNA, RPF, and TE expression changes for WT DHPG/Basal. The delta tab has calculated expression changes (log2FC) for RNA, RPF, and TE. The total mRNA tab has analysis for RNA expression changes (log2FC). The translated mRNA tab has analysis for RPF expression changes (log2FC). The buffering tab has analysis for TE expression changes (log2FC) that likely leads to translational buffering. The translation tab has analysis for TE expression changes (log2FC) that likely leads to altered protein levels.
DOI: 10.6084/m9.figshare.13093733
title: Additional file 5 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 5: Table S4. Table of anota2seq output for RNA, RPF, and TE expression changes for Tsc2+/−/WT. The delta tab has calculated expression changes (log2FC) for RNA, RPF, and TE. The total mRNA tab has analysis for RNA expression changes (log2FC). The translated mRNA tab has analysis for RPF expression changes (log2FC). The buffering tab has analysis for TE expression changes (log2FC) that likely leads to translational buffering. The translation tab has analysis for TE expression changes (log2FC) that likely leads to altered protein levels.
DOI: 10.6084/m9.figshare.13093730.v1
title: Additional file 4 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

description: Additional file 4: Table S3. Table of DESeq2 output for RNA and RPF expression changes for Tsc2+/−/WT and WT DHPG/Basal comparisons. FMRP binding targets are indicated in the last column based on binding strength (stringent, high, low). Nontargets are indicated by nonclip. Overlapping mRNAs and RPF altered in Tsc2+/− and responsive to DHPG from Fig. 5 are listed.
DOI: 10.6084/m9.figshare.13093759.v1
title: Additional file 1 of Transtheoretical model-based nutritional interventions in adolescents: a systematic review

description: Additional file 1.
DOI: 10.6084/m9.figshare.13093759
title: Additional file 1 of Transtheoretical model-based nutritional interventions in adolescents: a systematic review

description: Additional file 1.
DOI: 10.6084/m9.figshare.13093762
title: Additional file 2 of Transtheoretical model-based nutritional interventions in adolescents: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.13093760
title: Additional file 1 of A method for analysis of nuisance dust from integrated steel works: chemical and mineralogical characteristics of contributing sources

description: Additional file 1. Supplementary information is provided in the following additional files (prefixed with ‘additional file’): (A) fully indexed diffraction patterns and tabulated quantitative results for QXRD analyses; (B) complete details of filters used in grain population classification model; (C) tabulated data plotted in Fig. 6; (D)-(i) full tabulated data for PARC group and grain population area percentages per sample, and (D)-(ii) original SEM-BSE and PARC-generated imagery for all samples (files labelled by sample name and, where relevant, by image type); (E) tabulated data as plotted in Fig. 7; (F) tabulated quantitative SEM-EDS analyses as applicable to sections “Quantified chemistry of grain populations” and “Mode of occurrence of identified potentially toxic elements—V, Mn” (PARC group- and grain population sum-spectra for example nuisance dust dataset).
DOI: 10.6084/m9.figshare.13093760.v1
title: Additional file 1 of A method for analysis of nuisance dust from integrated steel works: chemical and mineralogical characteristics of contributing sources

description: Additional file 1. Supplementary information is provided in the following additional files (prefixed with ‘additional file’): (A) fully indexed diffraction patterns and tabulated quantitative results for QXRD analyses; (B) complete details of filters used in grain population classification model; (C) tabulated data plotted in Fig. 6; (D)-(i) full tabulated data for PARC group and grain population area percentages per sample, and (D)-(ii) original SEM-BSE and PARC-generated imagery for all samples (files labelled by sample name and, where relevant, by image type); (E) tabulated data as plotted in Fig. 7; (F) tabulated quantitative SEM-EDS analyses as applicable to sections “Quantified chemistry of grain populations” and “Mode of occurrence of identified potentially toxic elements—V, Mn” (PARC group- and grain population sum-spectra for example nuisance dust dataset).
DOI: 10.6084/m9.figshare.13093772.v1
title: Additional file 2 of Detection of Beijing strains of MDR M. tuberculosis and their association with drug resistance mutations in katG, rpoB, and embB genes

description: Additional file 2.
DOI: 10.6084/m9.figshare.13093772
title: Additional file 2 of Detection of Beijing strains of MDR M. tuberculosis and their association with drug resistance mutations in katG, rpoB, and embB genes

description: Additional file 2.
DOI: 10.6084/m9.figshare.13093780.v1
title: Additional file 1 of Ablation of polyamine catabolic enzymes provokes Purkinje cell damage, neuroinflammation, and severe ataxia

description: Additional file 1.
DOI: 10.6084/m9.figshare.13093825.v1
title: Additional file 2 of Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

description: Additional file 2: Table S1. Subject characteristics in relation to outcome at 36 months. Table S2. Subject characteristics table by subject. Table S3. Associations between ASD diagnosis, global CpG methylation, and the proportion of nRBCs. Table S4. ASD DMRs identified in discovery males with annotation and covariate association. Table S5. ASD DMRs identified in discovery females with annotation and covariate association. Table S6. ASD DMRs identified in males are maintained with adjustment for nRBC proportion. Table S7. ASD DMR methylation is associated with diagnosis after adjustment for all cord blood cell types. Table S8. ASD DMRs adjusting for sex identified in all discovery subjects with annotation and covariate association. Table S9. ASD DMRs identified in replication males with annotation and covariate association. Table S10. ASD DMRs identified in replication females with annotation and covariate association. Table S11. ASD DMRs adjusting for sex identified in all replication subjects with annotation and covariate association. Table S12. ASD DMRs replicate by region overlap with an independent computational method. Table S13. DMR methylation assayed by WGBS correlates with DMR methylation assayed by bisulfite pyrosequencing. Table S14. ASD DMRs replicate by region overlap with an independent sample set. Table S15. ASD DMRs replicated by region overlap with an independent sample set. Table S16. ASD DMRs replicated by differential methylation in an independent sample set. Table S17. ASD DMRs associated with autism severity among ASD subjects in multiple sample sets. Table S18. Replicated DMR and DMB genes with annotation. Table S19. ASD DMRs replicate by gene overlap with conservative mapping. Table S20. ASD DMBs identified in discovery males with annotation. Table S21. ASD DMBs identified in discovery females with annotation. Table S22. ASD DMBs identified in replication males with annotation. Table S23. ASD DMBs identified in replication females with annotation. Table S24. ASD DMB genes replicate in independent sample sets and overlap with DMR genes.
DOI: 10.6084/m9.figshare.13093780
title: Additional file 1 of Ablation of polyamine catabolic enzymes provokes Purkinje cell damage, neuroinflammation, and severe ataxia

description: Additional file 1.
DOI: 10.6084/m9.figshare.13093825
title: Additional file 2 of Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

description: Additional file 2: Table S1. Subject characteristics in relation to outcome at 36 months. Table S2. Subject characteristics table by subject. Table S3. Associations between ASD diagnosis, global CpG methylation, and the proportion of nRBCs. Table S4. ASD DMRs identified in discovery males with annotation and covariate association. Table S5. ASD DMRs identified in discovery females with annotation and covariate association. Table S6. ASD DMRs identified in males are maintained with adjustment for nRBC proportion. Table S7. ASD DMR methylation is associated with diagnosis after adjustment for all cord blood cell types. Table S8. ASD DMRs adjusting for sex identified in all discovery subjects with annotation and covariate association. Table S9. ASD DMRs identified in replication males with annotation and covariate association. Table S10. ASD DMRs identified in replication females with annotation and covariate association. Table S11. ASD DMRs adjusting for sex identified in all replication subjects with annotation and covariate association. Table S12. ASD DMRs replicate by region overlap with an independent computational method. Table S13. DMR methylation assayed by WGBS correlates with DMR methylation assayed by bisulfite pyrosequencing. Table S14. ASD DMRs replicate by region overlap with an independent sample set. Table S15. ASD DMRs replicated by region overlap with an independent sample set. Table S16. ASD DMRs replicated by differential methylation in an independent sample set. Table S17. ASD DMRs associated with autism severity among ASD subjects in multiple sample sets. Table S18. Replicated DMR and DMB genes with annotation. Table S19. ASD DMRs replicate by gene overlap with conservative mapping. Table S20. ASD DMBs identified in discovery males with annotation. Table S21. ASD DMBs identified in discovery females with annotation. Table S22. ASD DMBs identified in replication males with annotation. Table S23. ASD DMBs identified in replication females with annotation. Table S24. ASD DMB genes replicate in independent sample sets and overlap with DMR genes.
DOI: 10.6084/m9.figshare.13093831.v1
title: Additional file 3 of Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

description: Additional file 3: Table S25. DMB gene functional enrichment for all comparisons. Table S26. DMR gene functional enrichment for all comparisons. Table S27. DMR gene functional enrichment for all comparisons with conservative mapping. Table S28. X-linked gene functional enrichment. Table S29. DMR gene ASD study enrichment for all comparisons. Table S30. DMR gene ASD study enrichment for all comparisons with conservative mapping. Table S31. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked discovery males DMRs. Table S32. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked discovery females DMRs. Table S33. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked replication males DMRs. Table S34. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked replication females DMRs. Table S35. CpG context enrichment for all, autosomal, and X-linked DMRs from all comparisons. Table S36. Transcription factor motif enrichment for all, autosomal, and X-linked DMRs from all comparisons. Table S37. Fetal Brain ChromHMM enrichment for top transcription factor motifs. Table S38. Post hoc power analysis.
DOI: 10.6084/m9.figshare.13093831
title: Additional file 3 of Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes

description: Additional file 3: Table S25. DMB gene functional enrichment for all comparisons. Table S26. DMR gene functional enrichment for all comparisons. Table S27. DMR gene functional enrichment for all comparisons with conservative mapping. Table S28. X-linked gene functional enrichment. Table S29. DMR gene ASD study enrichment for all comparisons. Table S30. DMR gene ASD study enrichment for all comparisons with conservative mapping. Table S31. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked discovery males DMRs. Table S32. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked discovery females DMRs. Table S33. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked replication males DMRs. Table S34. Histone PTM and chromatin state enrichment for all, autosomal, and X-linked replication females DMRs. Table S35. CpG context enrichment for all, autosomal, and X-linked DMRs from all comparisons. Table S36. Transcription factor motif enrichment for all, autosomal, and X-linked DMRs from all comparisons. Table S37. Fetal Brain ChromHMM enrichment for top transcription factor motifs. Table S38. Post hoc power analysis.
DOI: 10.6084/m9.figshare.13093843.v1
title: Additional file 2 of States with fewer criminalizing immigrant policies have smaller health care inequities between citizens and noncitizens

description: Additional file 2. Number of state immigrant criminalization and inclusion policies, Enacted by December 31, 2013
DOI: 10.6084/m9.figshare.13093840
title: Additional file 1 of States with fewer criminalizing immigrant policies have smaller health care inequities between citizens and noncitizens

description: Additional file 1. State-level immigrant inclusion policies
DOI: 10.6084/m9.figshare.13093843
title: Additional file 2 of States with fewer criminalizing immigrant policies have smaller health care inequities between citizens and noncitizens

description: Additional file 2. Number of state immigrant criminalization and inclusion policies, Enacted by December 31, 2013
DOI: 10.6084/m9.figshare.13093840.v1
title: Additional file 1 of States with fewer criminalizing immigrant policies have smaller health care inequities between citizens and noncitizens

description: Additional file 1. State-level immigrant inclusion policies
DOI: 10.6084/m9.figshare.13093942.v1
title: Additional file 2 of Cardiac symptom attribution and knowledge of the symptoms of acute myocardial infarction: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.13093945
title: Additional file 3 of Cardiac symptom attribution and knowledge of the symptoms of acute myocardial infarction: a systematic review

description: Additional file 3.
DOI: 10.6084/m9.figshare.13093945.v1
title: Additional file 3 of Cardiac symptom attribution and knowledge of the symptoms of acute myocardial infarction: a systematic review

description: Additional file 3.
DOI: 10.6084/m9.figshare.13093942
title: Additional file 2 of Cardiac symptom attribution and knowledge of the symptoms of acute myocardial infarction: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.13093987.v1
title: Additional file 1 of Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production

description: Additional file 1. (CSV 14 kb)
DOI: 10.6084/m9.figshare.13093987
title: Additional file 1 of Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production

description: Additional file 1. (CSV 14 kb)
DOI: 10.6084/m9.figshare.13093990.v1
title: Additional file 2 of Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production

description: Additional file 2. (CSV 17 kb)
DOI: 10.6084/m9.figshare.13093990
title: Additional file 2 of Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production

description: Additional file 2. (CSV 17 kb)
DOI: 10.6073/pasta/20f7ff385c2290279e20313dcffdc7d8
title: Jornada Basin LTER: Wireless meteorological station at NPP G-SUMM site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP G-SUMM met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.