cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26089262
title: HiGTS_2014s4

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2014s4 contains the data from October 1, 2014 to December 31, 2014.
DOI: 10.15468/dl.yvbu5r
title: Occurrence Download

description: A dataset containing 11846553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11846553 records from 2134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001417-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1383321.10fu
title: SH1383321.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1383322.10fu
title: SH1383322.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18229827
title: JAMIYATNI TRANSFORMASIYALANISHI SHAROITIDA BO`LAJAK O`QITUVCHILAR KASBIY TAYYORGARLIGINI TAKOMILLASHTIRISHNING RETROSPEKTIV TAHLILI

description: Bugungi kunda jamiyatning barcha jabhalarida ro`y berayotgan transformasiya jarayonlari ta`lim tizimi oldiga ham yangi talablarni qo`ymoqda. Ayniqsa, bo`lajak o`qituvchilarning kasbiy tayyorgarligini takomillashtirish bu jarayonning muhim qismi sifatida maydonga chiqmoqda.
DOI: 10.5281/zenodo.18229828
title: JAMIYATNI TRANSFORMASIYALANISHI SHAROITIDA BO`LAJAK O`QITUVCHILAR KASBIY TAYYORGARLIGINI TAKOMILLASHTIRISHNING RETROSPEKTIV TAHLILI

description: Bugungi kunda jamiyatning barcha jabhalarida ro`y berayotgan transformasiya jarayonlari ta`lim tizimi oldiga ham yangi talablarni qo`ymoqda. Ayniqsa, bo`lajak o`qituvchilarning kasbiy tayyorgarligini takomillashtirish bu jarayonning muhim qismi sifatida maydonga chiqmoqda.
DOI: 10.15156/bio/sh1383323.10fu
title: SH1383323.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18229803
title: Dielectric function of amorphous Selenium

description: Data available

This dataset contains the dielectric function of amorphous selenium, measured on a thin film deposited by chemical transport by spectroscopic ellipsometry. The fitting of the ellipsometric data was performed using a double Tauc-Lorentz oscillator.

Structure of the files

The data file consists of five columns. Each row corresponds to a distinct photon energy value.

The columns are ordered as follows:





Photon energy (eV)




Real part of the dielectric function, Re(ε)




Imaginary part of the dielectric function, Im(ε)




Refractive index, n




Extinction coefficient, k
DOI: 10.5281/zenodo.18229804
title: Dielectric function of amorphous Selenium

description: Data available

This dataset contains the dielectric function of amorphous selenium, measured on a thin film deposited by chemical transport by spectroscopic ellipsometry. The fitting of the ellipsometric data was performed using a double Tauc-Lorentz oscillator.

Structure of the files

The data file consists of five columns. Each row corresponds to a distinct photon energy value.

The columns are ordered as follows:





Photon energy (eV)




Real part of the dielectric function, Re(ε)




Imaginary part of the dielectric function, Im(ε)




Refractive index, n




Extinction coefficient, k
DOI: 10.15468/dl.5nvb3y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"BRA.12.131_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005818-260108223611665/datasets/export for details.
DOI: 10.15156/bio/sh1383325.10fu
title: SH1383325.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1383326.10fu
title: SH1383326.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1383327.10fu
title: SH1383327.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4wcjey
title: Occurrence Download

description: A dataset containing 1254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Rana chiricahuensis Platz & Mecham, 1979)"
 ]
}

 The dataset includes 1254 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009841-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxmgcz
title: Occurrence Download

description: A dataset containing 2176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon hubrichti Thurow, 1957)"
 ]
}

 The dataset includes 2176 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009844-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15307300
title: SPACEL hemi_brain
DOI: 10.5281/zenodo.15307301
title: SPACEL hemi_brain
DOI: 10.15468/dl.9bwkv9
title: Occurrence Download

description: A dataset containing 17208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Dryophytes chrysoscelis (Cope, 1880))"
 ]
}

 The dataset includes 17208 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009842-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14976650
title: Calcium activity aligned to behavioral events

description: Trial by trial alignement of calcium traces to behavioral events. This data is related to figure 2 and figure S1 in publication:

 

Martel, A. C., et al. (2024). "Microendoscopic Calcium Imaging in Supplementary Motor Area and Primary Motor Cortex of Rhesus Macaques at Rest and During Arm Movement." bioRxiv: 2024.2006.2020.599918.
DOI: 10.5281/zenodo.14976651
title: Calcium activity aligned to behavioral events

description: Trial by trial alignement of calcium traces to behavioral events. This data is related to figure 2 and figure S1 in publication:

 

Martel, A. C., et al. (2024). "Microendoscopic Calcium Imaging in Supplementary Motor Area and Primary Motor Cortex of Rhesus Macaques at Rest and During Arm Movement." bioRxiv: 2024.2006.2020.599918.
DOI: 10.5281/zenodo.15116616
title: Jaccard (coactivation) analysis outputs

description: Jaccard (coactivation) values for calcium transients identified in M1 and SMA of macaques during spontaneous or task reaching behavior. Related to preprint

https://www.biorxiv.org/content/10.1101/2024.06.20.599918v3
DOI: 10.5281/zenodo.15116617
title: Jaccard (coactivation) analysis outputs

description: Jaccard (coactivation) values for calcium transients identified in M1 and SMA of macaques during spontaneous or task reaching behavior. Related to preprint

https://www.biorxiv.org/content/10.1101/2024.06.20.599918v3
DOI: 10.5281/zenodo.14976004
title: Sequence analysis outputs

description: Timings of sequenced calcium events displayed by SMA and M1 neurons. Related to figure 4, in manuscript: Martel, A. C., et al. (2024). "Microendoscopic Calcium Imaging in Supplementary Motor Area and Primary Motor Cortex of Rhesus Macaques at Rest and During Arm Movement." bioRxiv: 2024.2006.2020.599918.
DOI: 10.5281/zenodo.14976005
title: Sequence analysis outputs

description: Timings of sequenced calcium events displayed by SMA and M1 neurons. Related to figure 4, in manuscript: Martel, A. C., et al. (2024). "Microendoscopic Calcium Imaging in Supplementary Motor Area and Primary Motor Cortex of Rhesus Macaques at Rest and During Arm Movement." bioRxiv: 2024.2006.2020.599918.
DOI: 10.5281/zenodo.15317725
title: A Guideline for the Localization of Treatment Points in Heel Pain
title: Clinical Dataset Supporting the Study on Heel Pain Treatment Localization

description: This dataset contains anonymized clinical data collected from patients diagnosed with heel pain who were treated according to the guideline proposed in the manuscript. It includes demographic information (age, gender), pain intensity scores (VAS), treatment points applied, session counts, and follow-up outcomes. The data is structured in tabular format (Excel/.csv) and is intended to support the reproducibility and further analysis of the study finding
DOI: 10.5281/zenodo.15317726
title: A Guideline for the Localization of Treatment Points in Heel Pain
title: Clinical Dataset Supporting the Study on Heel Pain Treatment Localization

description: This dataset contains anonymized clinical data collected from patients diagnosed with heel pain who were treated according to the guideline proposed in the manuscript. It includes demographic information (age, gender), pain intensity scores (VAS), treatment points applied, session counts, and follow-up outcomes. The data is structured in tabular format (Excel/.csv) and is intended to support the reproducibility and further analysis of the study finding
DOI: 10.5281/zenodo.14826578
title: Neurochemical (FSCV dopamine) and electrical (spike and local field potential) neural activity data for validating micro-invasive probes in monkeys
DOI: 10.5281/zenodo.14826579
title: Neurochemical (FSCV dopamine) and electrical (spike and local field potential) neural activity data for validating micro-invasive probes in monkeys
DOI: 10.5281/zenodo.14727694
title: General descriptors of calcium activity in M1 and SMA cells
title: Cell activity statistics

description: For each cell in the SMA and M1, we calculated calcium event rates, inter-event interval coefficient of variation (IEI CV), and the mean amplitude of events during spontaneous and/or reaching task conditions.
DOI: 10.5281/zenodo.14727695
title: General descriptors of calcium activity in M1 and SMA cells
title: Cell activity statistics

description: For each cell in the SMA and M1, we calculated calcium event rates, inter-event interval coefficient of variation (IEI CV), and the mean amplitude of events during spontaneous and/or reaching task conditions.
DOI: 10.15468/dl.ujf3nj
title: Occurrence Download

description: A dataset containing 7148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Drepana falcataria (Linnaeus, 1758)"
 ]
}

 The dataset includes 7148 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009845-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrh6vm
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Aquarana Dubois, 1992)"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009847-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.parq5y
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon idahoensis Slater & Slipp, 1940)"
 ]
}

 The dataset includes 188 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009848-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g45j7x
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Dioctria linearis (Fabricius, 1787)"
 ]
}

 The dataset includes 133 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009849-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.o00133.00020
title: Chinese Color Nest Data Community Data Access Request
title: Chinese Color Nest Data Community Data Access Request

description: Access to the CCNDC data requires successful completion and execution of a Data Use Agreement (DUA). The CCNDC consortium will approve access to data and/or images for research purposes only. The CCNDC consortium will review the Access Request and the proposed DUA of each recipient requesting data and determine whether to provide access based on the expectations outlined in the following pages. These expectations include the protection of data privacy, confidentiality, and security. In the event that requests raise particular concerns related to privacy and confidentiality, risks to populations or groups, or other concerns, the CCNDC consortium will consult with other experts as appropriate. The CCDNC consortium reserves the right to suspend or revoke approved access requests at any time if concerns arise regarding the appropriateness of data usage by recipient or recipient's compliance with the DUA.
description: Access to the CCNDC data requires successful completion and execution of a Data Use Agreement (DUA). The CCNDC consortium will approve access to data and/or images for research purposes only. The CCNDC consortium will review the Access Request and the proposed DUA of each recipient requesting data and determine whether to provide access based on the expectations outlined in the following pages. These expectations include the protection of data privacy, confidentiality, and security. In the event that requests raise particular concerns related to privacy and confidentiality, risks to populations or groups, or other concerns, the CCNDC consortium will consult with other experts as appropriate. The CCDNC consortium reserves the right to suspend or revoke approved access requests at any time if concerns arise regarding the appropriateness of data usage by recipient or recipient's compliance with the DUA.
DOI: 10.15468/dl.3p2sgs
title: Occurrence Download

description: A dataset containing 17180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Hyla chrysoscelis Cope, 1880)"
 ]
}

 The dataset includes 17180 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009850-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15276748
title: A Comprehensive Dataset for lncRNA-Disease-Gene Associations with CGR and FCGR Representations

description: lncRNA–Disease–Gene Association Dataset with CGR/FCGR Representations

 DescriptionThis dataset provides a standardized and curated resource for analyzing the associations between long non-coding RNAs (lncRNAs), diseases, and genes. It integrates data from three widely-used biological databases:  - LncRNADisease- Comparative Toxicogenomics Database (CTD)- Ensembl

It is designed to support applications in bioinformatics, systems biology, and machine learning by combining raw biological sequences, structured association matrices, and visual sequence encodings.

---

Dataset Contents

- FASTA – 2,594 lncRNA sequences in FASTA format  - Associations/ –    - 6,662 lncRNA–disease associations    - 37,238 gene–disease associations    - 256 diseases, 351 genes  - Matrices/ – Binary and weighted association matrices for:    - lncRNA–disease    - gene–disease  - Images/ –    - CGR (Chaos Game Representation) images    - FCGR (Frequency CGR) images  - Scripts/ –    - scraping.py: Automated extraction from source databases    - preprocess.py: Cleaning, normalization, and formatting    - generate_images.py: Sequence-to-image transformation (CGR/FCGR)

---

Applications

This dataset can be used for:

- Predictive modeling of lncRNA-disease relationships  - Network-based disease association analysis  - Sequence-based and image-based machine learning models (e.g., CNNs, transformers)

---

## Reproducibility

All scripts and data files are open-access and reproducible. To regenerate the data:

python scraping.pypython preprocess.pypython generate_images.py