cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/vr3-1y2-1ns
title: Potamogeton alpinus Balb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-4bn-r40
title: Sparganium gramineum Georgi

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-6vc-r5x
title: Juncus articulatus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-7gq-fxh
title: Cystopteris fragilis (L.) Bernh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30931010
title: Supplementary Material for: Longitudinally Extensive Transverse Myelitis and Vasculitis by Cryptococcosis in a Non-HIV patient: A Case Report

description: Introduction: Cryptococcosis is a fungal infection with frequent involvement of the central nervous system (CNS), particularly in patients immunocompromised by the human immunodeficiency virus (HIV). Its essential neurological presentation is meningoencephalitis, with exceptional spinal cord involvement. We present the case of an immunocompetent patient with myelitis and vasculitis caused by Cryptococcus.

Clinical case: A 59-year-old male patient with diabetes mellitus, presented with two weeks of lower limb weakness, vertigo, and urinary retention with subsequent loss of alertness. Magnetic resonance imaging (MRI) confirmed a longitudinally extensive transverse myelitis (LETM), venous sinus thrombosis, and multiple cerebral infarcts involving the cerebellum, basal ganglia, and corpus callosum. Cerebrospinal fluid (CSF) confirmed Cryptococcus fungal infection. Differential diagnoses (infectious, autoimmune, metabolic, demyelinating, and neoplastic) were excluded. Liposomal amphotericin and flucytosine treatment were started for 6 weeks, with partial improvement. Late primary immunodeficiency was diagnosed based on a low CD4+ count, excluding HIV in multiple instances. The patient continues with motor and sensory sequelae and hypoacusis. 

Discussion: Myelitis of infectious origin is predominantly viral and bacterial. Spinal cord involvement by Cryptococcus is extremely unusual, and the literature is limited to case reports. This condition shows high heterogeneity in its presentation, being predominant in patients with immunocompetence. It can be associated with cryptococcomas and transverse or longitudinally extensive myelitis involving any spinal cord segment. The treatment duration and use of corticosteroids are still debatable. Few similar cases have been reported. 

Conclusion: Cryptococcus fungal infection should be included in the differential diagnosis of infectious myelopathies, even in patients without HIV infection.
DOI: 10.6084/m9.figshare.30931010.v1
title: Supplementary Material for: Longitudinally Extensive Transverse Myelitis and Vasculitis by Cryptococcosis in a Non-HIV patient: A Case Report

description: Introduction: Cryptococcosis is a fungal infection with frequent involvement of the central nervous system (CNS), particularly in patients immunocompromised by the human immunodeficiency virus (HIV). Its essential neurological presentation is meningoencephalitis, with exceptional spinal cord involvement. We present the case of an immunocompetent patient with myelitis and vasculitis caused by Cryptococcus.

Clinical case: A 59-year-old male patient with diabetes mellitus, presented with two weeks of lower limb weakness, vertigo, and urinary retention with subsequent loss of alertness. Magnetic resonance imaging (MRI) confirmed a longitudinally extensive transverse myelitis (LETM), venous sinus thrombosis, and multiple cerebral infarcts involving the cerebellum, basal ganglia, and corpus callosum. Cerebrospinal fluid (CSF) confirmed Cryptococcus fungal infection. Differential diagnoses (infectious, autoimmune, metabolic, demyelinating, and neoplastic) were excluded. Liposomal amphotericin and flucytosine treatment were started for 6 weeks, with partial improvement. Late primary immunodeficiency was diagnosed based on a low CD4+ count, excluding HIV in multiple instances. The patient continues with motor and sensory sequelae and hypoacusis. 

Discussion: Myelitis of infectious origin is predominantly viral and bacterial. Spinal cord involvement by Cryptococcus is extremely unusual, and the literature is limited to case reports. This condition shows high heterogeneity in its presentation, being predominant in patients with immunocompetence. It can be associated with cryptococcomas and transverse or longitudinally extensive myelitis involving any spinal cord segment. The treatment duration and use of corticosteroids are still debatable. Few similar cases have been reported. 

Conclusion: Cryptococcus fungal infection should be included in the differential diagnosis of infectious myelopathies, even in patients without HIV infection.
DOI: 10.3535/vr3-a0r-ca8
title: Selaginoides spinulosa (A. Braun ex Döll) Li Bing Zhang & X. M. Zhou

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-afk-svc
title: Sesleria uliginosa Opiz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-bpf-mwh
title: Poa glauca Vahl

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr3-e1z-0d7
title: Hedlundia hybrida (L.) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-0lz-3tt
title: Salix caprea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-0y4-jr4
title: Silene latifolia subsp. alba (Mill.) Greuter & Burdet

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30931013
title: Supplementary Material for: MGRS or MGUS? Diagnostic Dilemma of ANCA-Associated Pauci-Immune Crescentic Glomerulonephritis with Monoclonal Gammopathy: A Case Report

description: This case report presents a 55-year-old female with concurrent pauci-immune crescentic glomerulonephritis (PICGN) and monoclonal gammopathy of undetermined significance (MGUS), highlighting the diagnostic challenges in differentiating between monoclonal gammopathy of renal significance (MGRS) and MGUS in the context of ANCA-associated vasculitis (AAV). The patient presented with acute kidney injury, proteinuria, and hematuria, with renal biopsy revealing type III crescentic glomerulonephritis and immunofluorescence showing weak positivity for κ and λ monoclonal immunoglobulin deposits. Despite initial suspicion of MGRS, immuno-electron microscopy did not confirm monoclonal light chain deposition, leading to a final diagnosis of PICGN and MGUS. The patient was treated with glucocorticoids and cyclophosphamide, resulting in stabilization of renal function but necessitating maintenance hemodialysis due to irreversible renal damage. This case underscores the importance of integrating serological, histopathological, and advanced imaging techniques to distinguish between autoimmune and plasma cell dyscrasias in renal pathology. It also emphasizes the limitations of immunofluorescence alone in diagnosing MGRS and the necessity of immuno-electron microscopy for definitive exclusion. This report calls for further research into the pathophysiological interactions between AAV and monoclonal gammopathies, particularly in cases with overlapping renal injury features.
DOI: 10.6084/m9.figshare.30931013.v1
title: Supplementary Material for: MGRS or MGUS? Diagnostic Dilemma of ANCA-Associated Pauci-Immune Crescentic Glomerulonephritis with Monoclonal Gammopathy: A Case Report

description: This case report presents a 55-year-old female with concurrent pauci-immune crescentic glomerulonephritis (PICGN) and monoclonal gammopathy of undetermined significance (MGUS), highlighting the diagnostic challenges in differentiating between monoclonal gammopathy of renal significance (MGRS) and MGUS in the context of ANCA-associated vasculitis (AAV). The patient presented with acute kidney injury, proteinuria, and hematuria, with renal biopsy revealing type III crescentic glomerulonephritis and immunofluorescence showing weak positivity for κ and λ monoclonal immunoglobulin deposits. Despite initial suspicion of MGRS, immuno-electron microscopy did not confirm monoclonal light chain deposition, leading to a final diagnosis of PICGN and MGUS. The patient was treated with glucocorticoids and cyclophosphamide, resulting in stabilization of renal function but necessitating maintenance hemodialysis due to irreversible renal damage. This case underscores the importance of integrating serological, histopathological, and advanced imaging techniques to distinguish between autoimmune and plasma cell dyscrasias in renal pathology. It also emphasizes the limitations of immunofluorescence alone in diagnosing MGRS and the necessity of immuno-electron microscopy for definitive exclusion. This report calls for further research into the pathophysiological interactions between AAV and monoclonal gammopathies, particularly in cases with overlapping renal injury features.
DOI: 10.3535/vr4-4dw-gls
title: Carex ericetorum Pollich

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-4j2-0b3
title: Lepidium ruderale L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-6xd-jqg
title: Salix myrsinifolia × phylicifolia x myrsinifolia ssp. myrsinifolia × phylicifolia

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-797-5bz
title: Geranium dissectum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-7zq-119
title: Alchemilla filicaulis Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-9w6-ar2
title: Oxybasis rubra (L.) S. Fuentes, Uotila & Borsch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-bvf-x12
title: Ranunculus flammula subsp. flammula

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30931016
title: Supplementary Material for: 3DeepVOG: An Open-Source Framework for Real-Time, Accurate 3D Gaze Tracking with Deep Learning

description: Objective: Eye movements are key biomarkers for diagnosing and monitoring neuro-otological, neuro-ophthalmological and neurodegenerative disorders. Video-oculography (VOG) systems enable detection of small, rapid eye movements and subtle oculomotor pathologies that may be missed during clinical exams. However, they rely on high-quality input, struggle with torsional movements, and are often limited by high costs in clinical and research settings. Methods: To overcome these limitations, we developed 3DeepVOG, a deep learning-based framework for three-dimensional monocular gaze tracking (horizontal, vertical, and torsional rotation) that operates robustly across varied imaging conditions, including low-light and noisy environments. The method combines automated pupil and iris segmentation with geometrically interpretable estimation using a two-sphere anatomical eyeball model with corneal refraction correction. Torsion is tracked in real time using a novel mini-patch template matching approach. The system was trained on over 24,000 annotated samples obtained across multiple devices and clinical scenarios. Application was tested against a gold-standard VOG system in healthy controls. Results: 3DeepVOG operates in real time (&gt;300 fps) and achieves gaze errors of ~0.1° in all three dimensions. Oculomotor measures – saccadic peak velocity, smooth pursuit gain, and optokinetic nystagmus slow-phase velocity – show good-to-excellent agreement with a clinical gold-standard system. As proof of concept, we present a case of acute unilateral vestibular failure where 3DeepVOG reliably captures 3D nystagmus. Conclusions: 3DeepVOG enables accurate, quantitative eye movement tracking across three dimensions under diverse conditions. As an open-source framework, it provides an accessible and scalable tool for advancing research and clinical assessment in neurological oculomotor disorders.
DOI: 10.6084/m9.figshare.30931016.v1
title: Supplementary Material for: 3DeepVOG: An Open-Source Framework for Real-Time, Accurate 3D Gaze Tracking with Deep Learning

description: Objective: Eye movements are key biomarkers for diagnosing and monitoring neuro-otological, neuro-ophthalmological and neurodegenerative disorders. Video-oculography (VOG) systems enable detection of small, rapid eye movements and subtle oculomotor pathologies that may be missed during clinical exams. However, they rely on high-quality input, struggle with torsional movements, and are often limited by high costs in clinical and research settings. Methods: To overcome these limitations, we developed 3DeepVOG, a deep learning-based framework for three-dimensional monocular gaze tracking (horizontal, vertical, and torsional rotation) that operates robustly across varied imaging conditions, including low-light and noisy environments. The method combines automated pupil and iris segmentation with geometrically interpretable estimation using a two-sphere anatomical eyeball model with corneal refraction correction. Torsion is tracked in real time using a novel mini-patch template matching approach. The system was trained on over 24,000 annotated samples obtained across multiple devices and clinical scenarios. Application was tested against a gold-standard VOG system in healthy controls. Results: 3DeepVOG operates in real time (&gt;300 fps) and achieves gaze errors of ~0.1° in all three dimensions. Oculomotor measures – saccadic peak velocity, smooth pursuit gain, and optokinetic nystagmus slow-phase velocity – show good-to-excellent agreement with a clinical gold-standard system. As proof of concept, we present a case of acute unilateral vestibular failure where 3DeepVOG reliably captures 3D nystagmus. Conclusions: 3DeepVOG enables accurate, quantitative eye movement tracking across three dimensions under diverse conditions. As an open-source framework, it provides an accessible and scalable tool for advancing research and clinical assessment in neurological oculomotor disorders.
DOI: 10.3535/vr4-4lg-ewg
title: Chenopodium quinoa Willd.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-gzz-pxa
title: Geum rivale L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-j30-gzc
title: Noccaea Moench

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-pc8-jl5
title: Elymus macrourus (Turcz. ex Steud.) Tzvelev

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-vh9-24z
title: Potentilla intermedia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-vkr-p85
title: Salix L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr4-ycv-png
title: Sparganium natans L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-85h-nj3
title: Rosa majalis Herrm.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-a5k-bg0
title: Luzula arcuata x ssp. arcuata × ssp. confusa

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-a7w-l08
title: Lathyrus pratensis L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-cxb-47y
title: Potamogeton natans L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-hkl-wwq
title: Dichodon cerastoides (L.) Rchb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-qh3-qv6
title: Geum urbanum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-r83-3ce
title: Moehringia lateriflora (L.) Fenzl

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr5-zbk-yap
title: Thalictrum simplex subsp. simplex

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-1bw-vf6
title: Potentilla crantzii (Crantz) Beck ex Fritsch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-2pr-1dm
title: Leymus arenarius (L.) Hochst.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-80w-2pn
title: Melilotus officinalis (L.) Lam.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-925-3ns
title: Picea abies (L.) H.Karst.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-9hy-azs
title: Luzula pallescens Sw.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-ajc-m8j
title: Luzula arcuata x ssp. arcuata × ssp. confusa

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-alv-pll
title: Carex rostrata Stokes

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-bc3-bxv
title: Oxybasis Kar. & Kir.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-pnm-0cd
title: Carex elongata L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr6-tjg-02a
title: Micranthes nivalis (L.) Small

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-2zg-g74
title: Noccaea Moench

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-el7-eha
title: Equisetum hyemale L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-f91-atg
title: Sinapis alba L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-nqh-y1t
title: Elymus caninus (L.) L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-p61-pny
title: Persicaria amphibia (L.) Gray

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-plb-6vx
title: Carex limosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-qc2-ey3
title: Fritillaria meleagris L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-sz6-pjz
title: Alisma wahlenbergii (Holmb.) Juz.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr7-yvt-jhc
title: Alchemilla acutiloba Opiz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-65t-dxe
title: Sorbus aucuparia subsp. aucuparia

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-7yz-vff
title: Sagittaria sagittifolia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-f3y-rpp
title: Iris pseudacorus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-hlc-tlq
title: Salix cinerea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-r0e-jrc
title: Lolium pratense (Huds.) Darbysh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-sb3-m4c
title: Myrica gale L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-vfm-y9b
title: Euphorbia peplus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr8-wkf-d98
title: Prunus cerasus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-29k-1kn
title: Betula pubescens Ehrh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-6ra-vbh
title: Agrostis gigantea Roth

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-74y-0ay
title: Barbarea stricta Andrz.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-7f4-gyq
title: Rorippa palustris (L.) Besser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-7tv-f9n
title: Elymus caninus (L.) L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-ccz-q86
title: Myosurus minimus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-e9m-36f
title: Arabidopsis × suecica (Fr.) Norrl.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-h3s-krw
title: Cerastium alpinum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-n91-71b
title: Salix myrsinites L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vr9-zfn-bgw
title: Capsella bursa-pastoris (L.) Medik.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-2bm-wyf
title: Zostera marina L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-46x-353
title: Prunus padus x ssp. borealis × ssp. padus

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-761-pmr
title: Carex limosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-8ds-4ch
title: Isoetes echinospora Durieu

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-925-2cq
title: Carex digitata L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-jgz-d9g
title: Micranthes nivalis (L.) Small

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-mjp-x9q
title: Orchis mascula (L.) L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vra-rde-xry
title: Lepidium campestre (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.