cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.12g6t/1
title: Leger and Goergen Poa and Elymus 2017

description: Bedell performance, Bordertown performance, and McClellan performance worksheets contain data used to analyze the relationship between plant performance and plant traits for Elymus multisetus (Bordertown) and Poa secunda (Bedell, Bordertown) plant families seeded into three common gardens in Northern Nevada. Performance worksheets indicate Location, Family (siblings from a single parent plant), Treatment (InvadedBT= invaded; Invadedno BT = weeded, Uninvadedno BT = uninvaded), and plot number. Values are proportion of seeds per family in each block that emerged and survived in years 1, 2, and, when available, year 3. Average leaf numbers and height (cm) for living plants is shown, as is average biomass in 2012 (g).Trait values for seed and seedling traits are given as standardized (mean 0, SD 1) values used for analysis, with standardization indicated with "Z" before each trait. Traits are described in the MS text.

Bedell emerge survival, Bordertown emerge survival, and McClellan emerge survival worksheets show Location, Family, Treatment, Plot number, and row/column for each seed planted in each plot. Plants that emerged or survived in years 1, 2, and when available, 3, are shown as 0 or 1; missing data is indicated with "." These last three worksheets include all families planted in the field, including some for which seedling traits were not available, and thus not included in the performance analysis.
DOI: 10.5061/dryad.1b312/1
title: Database S1: Take-off kinematics

description: Morphology and take-off kinematics for all filmed mosquitoes. The database consists of three sets: (1) the body position and orientation throughout the complete take-off including the push-off phase and the aerial phase for all measured mosquitoes (n=63, results shown in Fig 2), (2) the body and wingbeat kinematics during the aerial phase for all wing-tracked mosquitoes (n=58, results shown in Fig 3), and (3) take-off kinematics of the sub-set of 16 mosquitoes whereby the full body and wing where tracked throughout the complete take-off (n=16, results shown in Fig 4). The body kinematics consists of the body position vector and orientation quaternion output from the tracker, and the Kalman filtered body position, velocity, acceleration and orientation. The wingbeat kinematics consists of the pre-Kalman filtered orientation quaternion of the left and right wing, and the post-Kalman filtered orientation quaternion and Euler angles (stroke, deviation and wing rotation angle) of the left and right wing.
DOI: 10.5061/dryad.1b312/2
title: Database S2: Fourier series of wingbeat kinematics

description: Fourier series coefficients of the average wingbeat of all steady flying unfed mosquitoes (n=264 wingbeats), and of the wingbeat modification parameters as a result of increased aerodynamic force production. All Fourier series coefficients are defined by Eqn 7. Using Eqn 7 and 9, one can reconstruct the steady flight wingbeat kinematics for a mosquito with an arbitrary blood-load of F/mg_unfed.
DOI: 10.5061/dryad.1b312/3
title: Database S3: microCT images of mosquito thorax

description: microCT scan results of the thorax of a female malaria mosquito using the TOMCAT beamline of the Swiss Light Source.
DOI: 10.5061/dryad.1bg63/1
title: Plant relative growth rate (RGR) with live (arbuscular mycorrhizal fungi and soil microbial filtrates) from pastures, coffee plantations and forest fragments

description: The data was collected from a greenhouse experiment in which 11 plant species (read below) were growth with either sterilized soil, or sterilized soil inoculated with arbuscular mycorrhizal fungi (AMF) or a soil microbial filtrate obtained from three habitats: pastures, coffee plantations, or forest fragments. Please read Pizano et al. 2017 Ecological Applications for details on the methods. Abbreviations of the data file are as follows: Inoculum (St=Sterile, PAMF=AMF from pastures, PFil=soil microbial filtrate from pastures, CAMF=AMF from coffee plantations, CFil=soil microbial filtrate from coffee plantations, FAMF=AMF from forest fragments, FFil=soil microbial filtrate from forest fragments), Species (Bra=Brachiaria brizantha, Cof=Coffea arabica, CecA=Cecropia angustifolia, CecT=Cecropia telealba, Ocr=Ochroma pyramidale, Sol=Solanum aphyodendrum, Jug=Juglans neotropica, Ret=Retrophyllum rospigliosii, Gar=Garcinia madrunno, Gus=Gustavia superba, Sip=Siparuna aspera), Total final dw (total whole plant dry biomass (g)), Root/Shoot (root dry biomass (g)/shoot (stem + leaves) dry biomass (g)), Initial leaf area (total plant leaf area (cm2), RGR (plant relative growth rate (final plant dry weight-initial plant dry weight calculated based on initial leaf area/ days of the experiment)(g/gday)), Days in exp. (days in the experiment; some plants were replaced because they died at the beginning of the experiment)
DOI: 10.5061/dryad.1bg63/2
title: Plnt relative growth rate (RGR) with arbuscular mycorrhizal fungi and soil microbial filtrates from pastures, coffee plantations and forest fragments

description: The data was collected from a greenhouse experiment in which 11 plant species (read below) were growth with sterilized soil inoculated with arbuscular mycorrhizal fungi (AMF) or a soil microbial filtrate obtained from three habitats: pastures, coffee plantations, or forest fragments. Please read Pizano et al. 2017 Ecological Applications for details on the methods. Abbreviations of the data file are as follows: Block (Block=block (bench) where the plant was located in the greenhouse where the experiment took place) Habitat (Habitat of origin of the soil P= pastures, C=coffee plantations, F= forest fragments), Inoculum (AMF=arbuscular mycorrhizal fungi, Fil=soil microbial filtrate), Species (Bra=Brachiaria brizantha, Cof=Coffea arabica, CecA=Cecropia angustifolia, CecT=Cecropia telealba, Ocr=Ochroma pyramidale, Sol=Solanum aphyodendrum, Jug=Juglans neotropica, Ret=Retrophyllum rospigliosii, Gar=Garcinia madrunno, Gus=Gustavia superba, Sip=Siparuna aspera), Total final dw (total whole plant dry biomass (g)), Root/Shoot (root dry biomass (g)/shoot (stem + leaves) dry biomass (g)), Initial leaf area (total plant leaf area (cm2), RGR (plant relative growth rate (final plant dry weight-initial plant dry weight calculated based on initial leaf area/ days of the experiment)(g/gday)), Days in exp. (days in the experiment; some plants were replaced because they died at the beginning of the experiment)
DOI: 10.5061/dryad.21m3t/1
title: SuppInf1

description: Supporting Information S1. Extended version of Methods section.
DOI: 10.5061/dryad.21m3t/2
title: SuppInf2

description: Supporting Information S2. GenBank numbers and voucher information for individuals included in the phylogenetic reconstructions.
DOI: 10.5061/dryad.21m3t/3
title: SuppInf3

description: Supporting Information S3. MCC tree for Bufonidae (Global Tree) recovered from time-calibrated Bayesian MCMC tree searches using BEAST under a birth-death uncorrelated lognormal relaxed clock model.
DOI: 10.5061/dryad.21m3t/4
title: SuppInf4

description: Supporting Information S4. MCC tree for the first African radiation (FAR tree) of bufonids, recovered from time-calibrated Bayesian MCMC tree searches using BEAST under a birth-death uncorrelated lognormal relaxed clock model.
DOI: 10.5061/dryad.21m3t/5
title: SuppInf5

description: Supporting Information S5. Phylogenetic tree recovered from pruning the FAR tree to include only a single representative of each currently recognized species (CRS tree).
DOI: 10.5061/dryad.21m3t/6
title: SuppInf6

description: Supporting Information S6. Tree recovered from pruning the FAR tree to include only a single representative of each bGMYC delimited element (bGMYC tree).
DOI: 10.5061/dryad.21m3t/7
title: SuppInf7

description: Supporting Information S7. Repeat of rate dynamics analyses (BAMM and BiSSE) using truncated bGMYC tree.
DOI: 10.5061/dryad.3274n/1
title: Calycophyllum candidissimum_Nicaragua_AFLP matrix

description: This is a presence/absence matrix generated based on AFLP fingerprinting for 220 individuals from thirteen populations spread around the Seasonal Tropical Dry Forest of Nicaragua. As result of three AFLP primer combination, it was successfully scored 226 unambiguous fragments ranging from 87 to 411 base pairs (bp), of which 147 markers were polymorphic.
DOI: 10.5061/dryad.34gp0/1
title: Rondoni_et_al_2017_SciRep_Data

description: Excel file contains 5 sheets. Sheets 1-2-3-4) data from olfactometer bioassays from the different experiments. Sheet 5) is a descriptor
DOI: 10.5061/dryad.34k42.1/7.1
title: 7.Total_Number_of_Aggressive_interactions_in_dog_packs

description: This file contains six tables. Each table is a squared matrix reporting the total number of aggressive gestures exchanged among dogs belonging to the same pack. So, each table corresponds to a different dog pack. Performers of aggressive gestures are reported on the vertical axis on the left side of each table, in which each individual dog is identified using a 2-3 letters code. Recipients of aggressive gestures are reported on the upper horizontal axis of each table, and again each individual dog is identified using a 2-3 letter code. Note that the data reported for the Curva pack are not statistically independent from those reported for the Fused pack, since the latter originated from the fusion of the Curva pack with another one and the data collected before and after the fusion event were combined (see Bonanni et al. 2017, Behav Ecol, for additional explanations). In the original paper, the data reported in these tables were used to calculate the statistical parameters reported in Table S6, i.e. hierarchy linearity, directional consistency of aggressive behaviour, hierarchy steepness, as well as percentage of unknown, 1-way, 2-ways, and tied dyadic relationships.
DOI: 10.5061/dryad.34k42.1/8.1
title: 8.Total_Number_of_Dominance_interactions_in_dog_packs

description: This file contains six tables. Each table is a squared matrix reporting the total number of dominance displays exchanged among dogs belonging to the same pack. So, each table corresponds to a different dog pack. Performers of dominance displays are reported on the vertical axis on the left side of each table, in which each individual dog is identified using a 2-3 letters code. Recipients of dominance displays are reported on the upper horizontal axis of each table, and again each individual dog is identified using a 2-3 letter code. Note that the data reported for the Curva pack are not statistically independent from those reported for the Fused pack, since the latter originated from the fusion of the Curva pack with another one and the data collected before and after the fusion event were combined (see Bonanni et al. 2017, Behav Ecol, for additional explanations). Also, note that the data concerning the Caraffa pack are missing because they were lost. In the original paper, the data reported in these tables were used to calculate the statistical parameters reported in Table S6, i.e. hierarchy linearity, directional consistency of dominance behaviour, hierarchy steepness, as well as percentage of unknown, 1-way, 2-ways, and tied dyadic relationships.
DOI: 10.5061/dryad.38q43/1
title: final_data

description: Characteristics of 728 UK Labrador Retrievers (e.g. sex, geographic region, role, coat colour). Further description in readme.txt file.
DOI: 10.5061/dryad.38q43/2
title: archive.tar

description: Genotype data (plink-format) for 728 UK Labrador Retrievers, using Illumina CanineHD SNP array. See readme.txt and text for further details.
DOI: 10.5061/dryad.3g824/1
title: Baseline Allele Frequencies

description: Baseline Allele Frequencies by Locus and Population - Sockeye and Kokanee combined
DOI: 10.5061/dryad.4k831/1
title: Photos 101-115

description: Photos 101-115 – Cytochemical fluorescent and bright field images were generated for quantification of Case12 and Alexa Fluor 555-α-bungarotoxin fluorescence in Neuro2a cells expressing human α7 nAChR (nicotinic acetylcholine receptor);
Photos 201-210 – Cytochemical fluorescent and bright field images were generated for quantification of Alexa Fluor 555-α-bungarotoxin fluorescence and background fluorescence (in green channel) in Neuro2a cells expressing human α7 nAChR;
Photos 301-316 – Cytochemical fluorescent and bright field images were generated for quantification of Case12 fluorescence and background fluorescence (in red channel) in Neuro2a cells expressing human α7 nAChR;
Photos 401-413 – Cytochemical fluorescent and bright field images were generated for quantification of background fluorescence (in green and red channels) in Neuro2a cells expressing human α7 nAChR;
Photos 501-505 – Cytochemical fluorescent and bright field images were generated for quantification of Case12 and Alexa Fluor 555-α-bungarotoxin fluorescence in Neuro2a cells expressing mouse muscle (WT nAChR;
Photos 604-612 – Cytochemical fluorescent and bright field images were generated for quantification of Alexa Fluor 555-α-bungarotoxin fluorescence and background fluorescence (in green channel) in Neuro2a cells expressing mouse muscle (WT) nAChR;
Photos 701-710 – Cytochemical fluorescent and bright field images were generated for quantification of TMRE (Tetramethylrhodamine, ethyl ester; 20 nM) labeling of Neuro2a cells expressing human α7 nAChR;
Photos 801-805 – Cytochemical fluorescent and bright field images were generated for quantification of PI (Propidium iodide; 50 ng/ml) labeling of Neuro2a cells expressing human α7 nAChR
DOI: 10.5061/dryad.4k831/2
title: Video_Calcium response of N2A cells_a7 nAChR

description: Videos show calcium response of Neuro2a cells expressing human α7 nAChR (nicotinic acetylcholine receptor), a chaperone NACHO and a fluorescent genetically-encoded calcium sensor Case12 to different concentration of acetylcholine in the presence of a positive allosteric modulator PNU120596. Controls in the presence of α-cobratoxin are presented as well.
DOI: 10.5061/dryad.4k831/3
title: Electrophysiology and Ca_imaging normalized data

description: The file contains the normalized electrophysiological (TEVC (two-electrode voltage clamp)) and calcium imaging (Ca-img) data for oocyte and Neuro2a cells responses, respectively. WT human α7 nAChR (nicotinic acetylcholine receptor) and mouse muscle nAChR were expressed in oocytes and Neuro2a cells. Besides, their mutants (at positions 117-119, 184, 185, 187 and 189 in α7 nAChR and at positions 153 and 190 in muscle nAChR) were heterologously expressed as well and their responses were estimated accordingly. Responses to different concentrations of acetylcholine (Ach) and epibatidine (Epi) were measured. For calcium imaging studies two calcium sensors (genetically encoded Case12 and low-molecular weight Fluo-4) were used. Calcium imaging analysis was carried out in the presence of a positive allosteric modulator PNU120596.
DOI: 10.5061/dryad.4k831/4
title: pdb

description: PDB file WT.pdb contains the last frame from 10 ns molecular dynamics simulation alpha7-AChBP chimera (PDB 3SQ6). Only two adjacent subunits were subjected to simulations.
PDB files with names E185V, E189G, F187S, L119D, Q117T, R186I, S184N and Y118W contain the last frame from molecular dynamics simulation of alpha7-AChBP chimera with the respective mutations (residues numbered according to human alpha7 nAChR).
PDB files F104.pdb and V104_mutant.pdb contain structures in which 104th residue of alpha7 AChBP chimera was changed either to phenylalanine (as in actual human alpha7 nAChR) or to valine (as in alpha9 nAChR).
DOI: 10.5061/dryad.526g0/1
title: Data from: How does environment influence fighting? The effects of tidal flow on resource value and fighting costs in sea anemones

description: Data regarding the anemone fights
DOI: 10.5061/dryad.526g0/2
title: Data from: How does environment influence fighting? The effects of tidal flow on resource value and fighting costs in sea anemones

description: Data regarding the startle response of the sea anemones
DOI: 10.5061/dryad.58m3g/1
title: Dataset for respiration rates and assimilation efficiencies

description: Dataset for assimilation efficiencies and respiration rates for different ectotherm consumer types (carnivores, herbivores, detritivores). The dataset contains species names, taxonomic classification, resource for assimilation efficiency measurements, body mass and experimental temperature.
DOI: 10.5061/dryad.58m3g/2
title: R-code for statistics and the simulation of maintenance feeding rates

description: R-code for a) the analysis of temperature and body mass dependencies of respiration rates and assimilation efficiencies across consumer types (carnivores, herbivores and detritivores) and b) the simulation of temperature effects on maintenance feeding rates based on the results of the dataset analyses (a). We also provide the R-code for c) statistics using an alternative random structure and d) statistics using only originally reported fresh weights.
DOI: 10.5061/dryad.58m3g/3
title: Supplementary Information

description: Supplement to "Temperature and consumer type dependencies of energy flows in natural communities", containing tables S1-S13.
DOI: 10.5061/dryad.684s1/1
title: 1_Metadata for Kluane Hare Grids

description: Descriptive data for the data given in the following 5 files
DOI: 10.5061/dryad.684s1/2
title: 2_Phases of Hare Cycle

description: Describes the phases of the ten-year cycle of snowshoe hares for the years of study in the Yukon
DOI: 10.5061/dryad.684s1/3
title: 3_Monitoring Data for Small Mammals

description: The detailed data for the 3 main species discussed in this paper for the years studied, population size and confidence limits.
DOI: 10.5061/dryad.684s1/4
title: 4_Controls Hare Live trap data Kluane

description: The detailed demographic data for snowshoe hares on the control grids by capture date over all the years of study and all the grids that were controls.
DOI: 10.5061/dryad.684s1/5
title: 5_Feeding Experiment Data Figure 1

description: The data used in Figure 1 for the feeding experiment on hares.
DOI: 10.5061/dryad.684s1/6
title: 6_Fence+Food Hare Capture Data

description: The detailed demographic data for the 1986-96 fence and food individual snowshoe hares by capture time, for this experiment that has been critical for our understanding.
DOI: 10.5061/dryad.6d476/1
title: PRESENCE data for Koala model validation
DOI: 10.5061/dryad.6f1t7/1
title: Data
DOI: 10.5061/dryad.79t4b/12
title: Pamo_Primercomb4_rawdata

description: Raw (unfiltered) 454 amplicon sequence data for tree sparrow using primer combination 4. Demultiplexed using the software jMHC (2011).
DOI: 10.5061/dryad.79t4b/13
title: Name_code

description: Details of  the samples included in the study. The column "Name in publication" indicates the name a samples has been given in the published article. The column "Name in 454 files" indicates the corresponding sample in the raw data files.
DOI: 10.5061/dryad.79t4b/14
title: Passer_concate_all_seq

description: Alignment of the 129 concatenated exon 3 alleles identified. Alignment performed manually using BioEdit V.7.2.5 Sequence Alignment Editor (Hall 1999). In FASTA format.
DOI: 10.5061/dryad.79t4b/15
title: Tree_alignment

description: Alignment of all alleles identified with primer combination 1 and used for building the phylogenetic tree.
DOI: 10.5061/dryad.7h766/1
title: Heermann et al_PLOSONE

description: In this file, data on food resources (zooplankton and macroinvertebrates) of perch can be found. Also given is total length of fish used in the analyses as well as the percentage composition of diet items and where available information about sex and maturation state of perch. Further, data derived from Procrustes superimposition describing shape of perch is shown.
DOI: 10.5061/dryad.84fk9/1
title: Literature review for goby population model

description: Data gathered in a systematic literature review to parameterise a dynamical population model for invasive round goby populations.
DOI: 10.5061/dryad.8h007/1
title: 2015_Fescue_phenology_interactions_experiment

description: The dataset contains 11 columns, described below.

date = date that the leaf was surveyed for infection

Tiller = tiller number on the plant (for some plants, the original tiller had to be replaced)

ID = Plant ID number.

Endophyte = Infection status of the seed by the fungal endophyte, Epichloë coenophiala.

Leaf = Leaf number, indicating the relative age of each leaf on a tiller, with lower numbers corresponding to older leaves.

LeafID = a unique ID for each leaf (combination of ID, Tiller, and Leaf).

cohort = The experimental cohort the plant ID belongs to. There were three cohorts. The first cohort was placed on 22 June 2015, during the Colletotrichum epidemic, but before other parasite epidemics began. The second cohort was placed on 27 July 2015, shortly after the start of the Rhizoctonia epidemic, but before the Puccinia epidemic began. The third cohort was placed on 21 September 2015, shortly after the start of the Puccinia epidemic, when all three parasites were present.

leaf.emergence = the date that each leaf emerged. For leaves that emerged before the start of the experiment, this date was set to the date that the plant was placed in the field.

Puccinia, Colletotrichum, Rhizoctonia = the percent leaf area damaged by Puccinia, Colletotrichum, and Rhizoctonia, respectively. This is a measurement of infection severity.
DOI: 10.5061/dryad.8mm4h/1
title: Feng et al-stablel isotope data for Journal of Applied Ecology 2017

description: The datafile include all the stable isotoep data of macrofauna and food sources used in the paper. Abbreviation:
DOI: 10.5061/dryad.b5n38/1
title: TelemecoEtAl2017_JAnimEcol_PhysiologyData

description: Data for all physiological analyses and plots presented (e.g. plasma CORT, plasma glucose, mitochondrial respiration rates)
DOI: 10.5061/dryad.b5n38/2
title: TelemecoEtAl2017_JAnimEcol_MetaboliteData

description: Metabolite concentrations for each individual
DOI: 10.5061/dryad.f0h35/1
title: Persistence of consumer-resources interactions from the persistence matrix

description: The columns represent consumers and rows represent resources. Each cell represents the persistence of each trophic interaction.
DOI: 10.5061/dryad.f971b/1
title: Ecography_ECOG-02995_DRYAD_2017

description: Table Dryad 1. Sampling sites, number of individuals genotyped at 16 nuclear microsatellites (N), Census population size, and environmental variables for each population (n=57).

Table Dryad 2. Pairwise genetic differentiation between caribou herds. Below diagonal: Fst and above diagonal: Dc chord distance.

Table Dryad 3. Pairwise geographic distance (IBD) between caribou herds. Below diagonal: geodesic distance and above diagonal: distance on a flat landscape.

Table Dryad 4. Above diagonal: Pairwise environmental dissimilarity (IBE) between caribou herds. Below diagonal: Pairwise landscape resistance (IBR) between caribou herds

Table Dryad 5. Pairwise harmonic mean of census population sizes (Nc)
DOI: 10.5061/dryad.j3572/1
title: Schofieldetal_SexRatioData

description: Post survey data reviewing all video footage captured in real time during transects on a computer, with records of transect zones and line, weather (local weather station and direct from drone), sea state, and turtle sighting data.
DOI: 10.5061/dryad.j3ck6/6
title: Sample Key for VCF file

description: This file contains information on the individual samples included in the VCF file.
DOI: 10.5061/dryad.mq2q9/3
title: R code file

description: Contains R code and paths to relevant files in the data package
DOI: 10.5061/dryad.pg034/2
title: Genepop_Msats_Dryad
DOI: 10.5061/dryad.rf7g5.2
title: Data from: Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for Anchored Phylogenomics
DOI: 10.5061/dryad.rf7g5.2/38.2
title: README

description: README File containing list of files and script contained in this dryad package
DOI: 10.5061/dryad.rf7g5.2/5.2
title: Breinholt_et_al_Supplementary_Figure_S1

description: Supplementary Figure S1 from Breinholt et al. (2017)