cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2kh91/1
title: Plot information

description: It contains plot census data (diameters and heights) from the two plots in the Alerce Costero and Alerce Andino National Parks.
DOI: 10.5061/dryad.2kh91/2
title: Litterfall

description: It contains monthly litterfall data from the two plots in the Alerce Costero and Alerce Andino National Parks.
DOI: 10.5061/dryad.2kh91/3
title: Branchfall

description: It contains branchfall data from collections every three months in the two plots in the Alerce Costero and Alerce Andino National Parks.
DOI: 10.5061/dryad.50j03/1
title: SNP data by genotyping by sequnecing in pearl millet germplasm

description: The upload SNP data, including 83,875 SNPs, was generated by genotyping by sequencing in 500 pearl millet germplasm collected from several different countries.
DOI: 10.5061/dryad.5fn84/1
title: Network data
DOI: 10.5061/dryad.5h3k3/1
title: Kivelä et al. 2015_BJLS_data
DOI: 10.5061/dryad.83367/1
title: Convex hull from initial skeletal model

description: Minimum convex hulls from the initial 'preferred' skeletal segments have been combined into one 3d model. Model volume is equal to the combined volumes of the merged segments.
DOI: 10.5061/dryad.83367/2
title: Convex hull from 'minimum' sensitivity analysis model
DOI: 10.5061/dryad.83367/3
title: Convex hull from 'maximum' sensitivity analysis model
DOI: 10.5061/dryad.84c1m/1
title: Description of uploaded data files
DOI: 10.5061/dryad.84c1m/2
title: csv
DOI: 10.5061/dryad.84c1m/3
title: curvature 0-100
DOI: 10.5061/dryad.84c1m/4
title: curvature 200-500
DOI: 10.5061/dryad.84c1m/5
title: geological variable
DOI: 10.5061/dryad.84c1m/6
title: maximum slope 0-100
DOI: 10.5061/dryad.84c1m/7
title: maximum slope 200-500
DOI: 10.5061/dryad.84c1m/8
title: mean slope 25-200
DOI: 10.5061/dryad.84c1m/9
title: mean slope 300-500
DOI: 10.5061/dryad.9432p/10
title: TLR21_All Acampestris

description: This file contains the TLR21 genotypes of all tawny pipits sampled
DOI: 10.5061/dryad.9432p/11
title: Pipit TLR FST

description: This file contains the pairwise Fst calculated for TLRs
DOI: 10.5061/dryad.9432p/12
title: Pipit pairwise FST per msat locus

description: This file contains the pairwise Fst calculated with microsatellites
DOI: 10.5061/dryad.9432p/4
title: TLR1LB_All Acampestris

description: This file contains the TLR1LB genotypes of all tawny pipits sampled.
DOI: 10.5061/dryad.9432p/5
title: TLR3_All Aberthelotii

description: This file contains the TLR3 genotypes of all Berthelot's pipits sampled
DOI: 10.5061/dryad.9432p/6
title: TLR3_All Acampestris

description: This file contains the TLR3 genotypes of all tawny pipits sampled
DOI: 10.5061/dryad.9432p/7
title: TLR4_All Aberthelotii

description: This file contains the TLR4 genotypes of all Berthelot's pipits sampled
DOI: 10.5061/dryad.9432p/8
title: TLR4 _All Acampestris

description: This file contains the TLR4 genotypes of all tawny pipits sampled
DOI: 10.5061/dryad.9432p/9
title: TLR21_All Aberthelotii

description: This file contains the TLR21 genotypes of all Berthelot's pipits sampled
DOI: 10.5061/dryad.94r7j/1
title: Colony and regional variation in fire ant foraging behavior before and after exposure to different foraging habitats

description: Raw data for analysis of regional and colony-level variation in fire ant foraging behavior.  Data includes fire ant foraging behavior before and after five weeks exposure to ground-level vs. elevated foraging habitat types.  Recruitment to ground-level and elevated resources, disovery and trail formation times, extra-nest activity, and exploratory activity are included, as well as weight of food collected and final colony size.
DOI: 10.5061/dryad.cv461/2
title: Literature survey of selection and pollen limitation

description: The data is summary of the literature survey used to explore the relationship between selection and pollen limitation. Using Web of Science, we searched for studies citing Lande and Arnold (1983).Based on publication title, 396 studies were found to contain selection estimate(s) for a natural population. For each of these studies, we searched for the occurrence of the words "pollen”, “limitation”, or “limited”. If any of the words was found, the abstract and/or methods of the study were read to determine whether an estimate of selection was reported as well as an estimate of pollen limitation. For each study we categorized traits into the following five classes: flower size, flower number, plant size, phenology and vegetative. Because different fitness measures were used to assess pollen limitation and a single study often reported multiple estimates, we used the “best pollen limitation" estimate available” by prioritizing the estimates from each study as follows: (1) mean number (or percentage) of seeds, (2) mean number (or percentage) of fruits, (3) mean number (or percentage) of seeds per flower, (4) mean number (or percentage) of seeds per fruit, (5) mean number (or percentage) of fruits per flower and (6) mean number (or percentage) of seeds per ovule.
DOI: 10.5061/dryad.d58b8/2
title: 15RE_R2

description: Second read pairs for Sample 15 BT-RE, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/3
title: 45BT_R1

description: First read pairs for Sample 45 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/4
title: 45BT_R2

description: Second read pairs for Sample 45 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/5
title: 57AT_R1

description: First read pairs for Sample 57 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/6
title: 57AT_R2

description: Second read pairs for Sample 57 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/7
title: 85BT_R1

description: First read pairs for Sample 85 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/8
title: 85BT_R2

description: Second read pairs for Sample 85 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/9
title: 141BT_R1

description: First read pairs for Sample 141 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.ft58s/1
title: snpChipGWASTpedFile_27Nov2015

description: This file contains the SNP chip genotypes in PLINK .tped format. The genotypes are linked to identifications by the associated .tfam file.
DOI: 10.5061/dryad.ft58s/2
title: snpChipGWASTfamFile_27Nov2015

description: This is the .tfam file for the SNP chip data set.
DOI: 10.5061/dryad.k9c31/74
title: 89_Barker_2013_GENEPOP_allozyme_file_195_collections

description: This data file contains the GENEPOP data file with genotypes of seven allozyme loci (phosphoglucomutase (Pgm), aldehyde oxidase (Aldox), hexosaminadase (Hex), alcohol dehydrogenase-1 (Adh-1), esterase-1 (Est-1) and esterase-2 (Est-2) and leucine aminopeptidase (Lap)) for 67 D. buzzatii populations collected between 1972 and 1996. Some of these populations were sampled two or more times and in total 195 samples were collected. When using this data, please cite the original publication:Barker, J. Stuart F. (2013). Genetic history of a colonizing population: Drosophila buzzatii (Diptera: Drosophilidae) in Australia. Biological Journal of the Linnean Society 109: 682-698
DOI: 10.5061/dryad.k9c31/76
title: 94_Barker_2005_S_aclinata_microsatellite_markers

description: This data set contains raw genotypes of 17 microsatellite markers for 5 Scaptodrosophila aclinata populations collected in 1995. When using this data, please cite the original publication:Barker, J S F (2005). Population structure and host-plant specialization in two Scaptodrosophila flower-breeding species. Heredity 94: 129-138
DOI: 10.5061/dryad.k9c31/77
title: 95_Barker_2005_S_hibisci_microsatellite_markers

description: This data set contains raw genotypes of 19 microsatellite markers for 9 S. hibisci populations collected in 1998. When using this data, please cite the original publication:Barker, J S F (2005). Population structure and host-plant specialization in two Scaptodrosophila flower-breeding species. Heredity 94: 129-138
DOI: 10.5061/dryad.k9c31/78
title: 96_Magiafoglou_et_al_2002_microsatellite_markers

description: This data set contains raw genotypes of 8 microsatellite markers for Drosophila serrata populations collected before (14 populations) and after (10 populations) winter in 1999 (Table 4). Note longitudes in data are approximate. When using this data, please cite the original publication:Magiafoglou, A., Carew, M. E. and Hoffmann, A. A. (2002). Shifting clinal patterns and microsatellite variation in Drosophila serrata populations: a comparison of populations near the southernborder of the species range. Journal of Evolutionary Biology 15: 763-774
DOI: 10.5061/dryad.k9c31/79
title: 97_Hoffmann_et_al_2005_Desiccation_resistance

description: This data file contains desiccation resistance (LT50 in hours) for groups of 10 females of 8 Drosophila melanogaster populations collected in 2001 and kept under three seasonal conditions (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, A. A., Shirriffs, J. and Scott, M. (2005). Relative importance of plastic vs genetic factors in adaptive differentiation: geographical variation for stress resistance in Drosophila melanogaster from eastern Australia. Functional Ecology 19: 222-227
DOI: 10.5061/dryad.k9c31/80
title: 98_Hoffmann_et_al_2005_Starvation_resistance

description: This data file contains starvation resistance (LT50 in hours) for groups of 10 females of 8 Drosophila melanogaster populations collected in 2001 and kept under three seasonal conditions (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, A. A., Shirriffs, J. and Scott, M. (2005). Relative importance of plastic vs genetic factors in adaptive differentiation: geographical variation for stress resistance in Drosophila melanogaster from eastern Australia. Functional Ecology 19: 222-227
DOI: 10.5061/dryad.k9c31/81
title: 99_Hoffmann_et_al_2005_Heat_resistance

description: This data file contains heat knockdown time in minutes (corrected for different runs) for individual females of 8 Drosophila melanogaster populations collected in 2001 and kept under three seasonal conditions (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, A. A., Shirriffs, J. and Scott, M. (2005). Relative importance of plastic vs genetic factors in adaptive differentiation: geographical variation for stress resistance in Drosophila melanogaster from eastern Australia. Functional Ecology 19: 222-227
DOI: 10.5061/dryad.k9c31/82
title: 201_Barker_2005_S_aclinata_collection_records

description: This data set contains collection records for Scaptodrosophila aclinata for 24 locations where flies were sampled directly from Hibiscus flowers in 1995 (Fig. 1). Hibiscus species, coordinates and altitude are reported for each location. When using this data, please cite the original publication:Barker, J S F (2005). Population structure and host-plant specialization in two Scaptodrosophila flower-breeding species. Heredity 94: 129-138
DOI: 10.5061/dryad.kd1r2/1
title: Data

description: Chemistry (gas chromatography results): relative amounts of cuticular compounds extracted from bumblebee nest wax and from cuticle surfaces of sterile and fertile workers and egg-laying queens; Results from group experiments: observed behaviour (neutral, aggressive, defensive) and ovarian development (percent)
DOI: 10.5061/dryad.p064v/1
title: Jongepier_Foitzik_2015_DATA_ProcRSocB

description: Consists of a meta data table with variable descriptions and 5 data tables; Jongepier_data_var, Jongepier_data_pop, Jongepier_data_setup, Jongepier_data_raid and Jongepier_data_scan.
DOI: 10.5061/dryad.p064v/2
title: Jongepier_Foitzik_2015_SCRIPT_ProcRSocB

description: R script
DOI: 10.5061/dryad.qh8sh/1
title: trinity-assemblies-for-dryad.tar.gz

description: Raw reads assembled de novo into contigs using trinity (trinityrnaseq_r2013-02-25).
DOI: 10.5061/dryad.qh8sh/10
title: wesj-toepads-inDels-Q30.vcf.gz

description: InDel calls using for VariantFiltration in GATK.
DOI: 10.5061/dryad.qh8sh/2
title: toepad-taxa.conf

description: The taxon-names configuration file for creating UCE data sets for use with the get_match_counts.py (https://github.com/faircloth-lab/phyluce).
DOI: 10.5061/dryad.qh8sh/3
title: toepad-taxa-COMPLETE.tar.gz

description: Untrimmed and trimmed Nexus files, PHYLIP concatenated alignment, and RAxML input/output for the 100% complete data matrix.
DOI: 10.5061/dryad.qh8sh/4
title: toepad-taxa-COMPLETE-RAxML_bipartitions.FINAL.tre

description: Newick-formatted tre file for the 100% complete concatenated matrix.
DOI: 10.5061/dryad.qh8sh/5
title: toepad-taxa-INCOMPLETE.tar.gz

description: Untrimmed and trimmed Nexus files, PHYLIP concatenated alignment, RAxML input/output for the incomplete data matrix.  Includes directory of coverage computations for all UCE loci as well as loci in 75% complete data matrix.
DOI: 10.5061/dryad.qh8sh/6
title: toepad-taxa-INCOMPLETE-RAxML_bipartitions.FINAL

description: Newick-formatted tre file for the 75% complete concatenated matrix.
DOI: 10.5061/dryad.qh8sh/7
title: wesj-103135-reference-sequence.tar.gz

description: Quasi-reference sequence and sequences indexes for LACM-103135.  Used for SNP-calling.
DOI: 10.5061/dryad.qh8sh/8
title: wesj-toepads-realigned.bam.placeholder

description: Merged BAM file that we realigned around indels using GATK. Contains alignment information for all individuals across which we called SNPs using GATK.
DOI: 10.5061/dryad.s1v61/1
title: MFN_HSJ_Mismatch R Code

description: R code to simulate model described. To run in R type Source("HSJMain.R")
DOI: 10.5061/dryad.v3m84.2
title: Data from: Tipping the scales: evolution of the allometric slope independent of average trait size
DOI: 10.5061/dryad.v3m84.2/1.2
title: ReadMe

description: This describes the files associated with the publication, and their  contents.
DOI: 10.5061/dryad.v3m84.2/2.2
title: ALLDATA

description: This .txt file contains linage, sex, pupal size, wing size, and generation data for all flies in the experiment.
DOI: 10.5061/dryad.v3m84.2/3.2
title: SLOPE_ANALYSIS

description: This file contains the annotated R scripts used in the main analyses
DOI: 10.5061/dryad.v3m84.2/4.2
title: VECTOR_PROJECTIONS

description: The .xlsx data file giving the inter-generational change in body (pupal) and wing size parallel and orthogonal to the allometry of the previous generation. Cells include formulae used to calculate the change.
DOI: 10.5061/dryad.v3m84.2/5.2
title: SELNDIF_ANALYSIS

description: The annotated R scripts used to calculate realized heritabilities.
DOI: 10.5061/dryad.v3m84.2/6.2
title: SELNDIF

description: The data file giving the cumulative selection differentials for allometric slope in each sex/linage combination across generations.
DOI: 10.5061/dryad.10gh5.1
title: Data from: Phylogeny of Tetillidae (Porifera, Demospongiae, Spirophorida) based on three molecular markers
DOI: 10.5061/dryad.10gh5.2/4.2
title: COI_18SrRNA_28SrRNA_combined_tree

description: Phylogenetic tree presented in Figure 1: Bayesian phylogenetic tree reconstructed from a combined dataset of the cox1 gene and the 18S and 28S rRNA sequences. Secondary structures were taken into account in the model. Newick format.
DOI: 10.5061/dryad.10gh5.2/5.2
title: COI tree

description: Phylogenetic tree presented in Figure 2: Bayesian phylogenetic tree reconstructed from the COI gene, in Nexus format.
DOI: 10.5061/dryad.7f1j1.2
title: Data from: Comparative limb bone loading in the humerus and femur of the tiger salamander: testing the ‘mixed-chain’ hypothesis for skeletal safety factors
DOI: 10.5061/dryad.7f1j1.2/1.2
title: Ambystoma Bone Load Kinematic Data

description: Kinematic data for the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.7f1j1.2/2.2
title: Ambystoma Bone Load Moment Data

description: Moment arm data for the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.7f1j1.2/3.2
title: Ambystoma Bone Load Peak Net GRF Data

description: Peak net ground reaction force data for the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.7f1j1.2/4.2
title: Ambystoma Bone Load Safety Factor Data

description: Vickers hardness and safety factor data for the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.7f1j1.2/7.2
title: README

description: README.rtf describes the metadata for all files in "Data from: Comparative limb bone loading in the humerus and femur of the tiger salamander: testing the ‘mixed-chain’ hypothesis for skeletal safety factors"
DOI: 10.5061/dryad.9432p/13
title: code to get pairwise bottleneck distance between islands

description: This file contains an R code to get pairwise bottleneck distances
DOI: 10.5061/dryad.9432p/14
title: CO1_Anthus_aligned

description: This file contains the alignment of the Cytochrome Oxidase subunit 1 haplotypes from Anthus campestris and Anthus berthelotii
DOI: 10.5061/dryad.9432p/15
title: TLR1LA_All_genotypes2015

description: This is the output file with Phase results for TLR1LA in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
DOI: 10.5061/dryad.9432p/16
title: TLR1LB_All_genotypes2015

description: This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
DOI: 10.5061/dryad.9432p/17
title: TLR3_All_genotypes2015

description: This is the output file with Phase results for TLR3 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
DOI: 10.5061/dryad.9432p/18
title: TLR4_All_genotypes2015

description: This is the output file with Phase results for TLR4 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
DOI: 10.5061/dryad.9432p/19
title: TLR21_All_genotypes2015

description: This is the output file with Phase results for TLR21 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad
DOI: 10.5061/dryad.9432p/20
title: TLR1LA_ TREE SESSION 2015

description: Tree file for the TLR1LA phylogeny
DOI: 10.5061/dryad.9432p/21
title: TLR1LB_tree session 2015

description: Tree file for the TLR1LB phylogeny
DOI: 10.5061/dryad.cv8cr/1
title: Raw labeled reads from faecal samples of Calidris alpina, C. alba and Plectrophenax nivalis

description: Collected while handling the birds or from the field while observing the birds. DNA extracted from individual pellets using Zymo Research Faecal Mini Kit. Sequenced using Ion Torrent PGM. FASTQ file header stands for:@READNUMBER;barcodelabel=SAMPLEID_COLLECTIONLOCALITY_DAY-MONTH-YEAR_BIRDSPECIES_BIRDAGE.
DOI: 10.5061/dryad.cv8cr/2
title: Raw labeled reads from samples of Pardosa glacialis, Xysticus deichmanni, X. labradorensis, Erigone arctica, and Emblyna borealis

description: Collected from the field. DNA extracted from half individuals using Qiagen Animla Tissue Kit. Sequenced using Ion Torrent PGM. FASTQ file header stands for: @READNUMBER;barcodelabel=SAMPLEID. SampleID: Xd =
DOI: 10.5061/dryad.cv8cr/3
title: OTU sequences

description: Clustered to OTUs using USEARCH algorithm with default (97%) similarity. This way there is a little bit of oversplitting, and OTUs belonging to same biological species are clustered subsequently.
DOI: 10.5061/dryad.cv8cr/4
title: Readmap linking trimmed reads and samples

description: The readmap shows read count for each sample. The readmap is constructed using USEARCH software.
DOI: 10.5061/dryad.cv8cr/5
title: Technical data sheet for IonTorrent PGM runs

description: The data generated by Ion Torrent PGM for each run in the study.
DOI: 10.5061/dryad.d58b8/10
title: 141BT_R2

description: Second read pairs for Sample 141 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/11
title: 146AT_R1

description: First read pairs for Sample 146 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/12
title: 146AT_R2

description: Second read pairs for Sample 146 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/13
title: 146BT_R1

description: First read pairs for Sample 146 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/14
title: 146BT_R2

description: Second read pairs for Sample 146 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/15
title: 148AT_R1

description: First read pairs for Sample 148 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/16
title: 148AT_R2

description: Second read pairs for Sample 148 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.ft58s/3
title: snpChipGWASPhenotypes

description: This file contains the phenotype information for the SNP chip-based GWA analysis. The file contains columns for the individual ID, patch size, year of sampling, age at sampling.
DOI: 10.5061/dryad.ft58s/4
title: snpChipGwasResults

description: Output from RepeatABEL GWA analysis of the SNP chip data set.
DOI: 10.5061/dryad.ft58s/5
title: resequencing_collaredFlycatcherGenotypes

description: This file contains the genotypes used in the GWA analysis of 81 genome-resequenced male collared flycatchers. The data are in PLINK .tped format.
DOI: 10.5061/dryad.ft58s/6
title: resequencing_collaredFlycatcherGenotypes

description: This is the PLINK .tfam format file for the genotypes of the 81 genome-resequenced male collared flycatchers.
DOI: 10.5061/dryad.ft58s/7
title: resequencingCollaredFlycatchers_phenotypes

description: This file contains the phenotype information used in the GWA analysis of 81 genome-resequenced male collared flycatchers. The file contains columns for identification, year, age at sampling, patch size, and year born.
DOI: 10.5061/dryad.ft58s/8
title: resequencingGwasResults

description: This file contains the output from RepeatABEL GWA analysis of the 81 genome-resequenced collared flycatcher males.
DOI: 10.5061/dryad.hf0rm/1
title: Virtual 3D PDF of emu (Dromaius novaehollandiae) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the emu (Dromaius novaehollandiae) specimen SAM B6863 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/2
title: Virtual 3D PDF of southern cassowary (Casuarius casuarius) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the southern cassowary (Casuarius casuarius) specimen CMAv14294 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.k9c31/83
title: 202_Barker_2005_S_hibisci_collection_records

description: This data set contains collection records for Scaptodrosophila hibisci for 63 locations where flies were sampled directly from Hibiscus flowers in 1998 (Fig. 1). Hibiscus species, coordinates and altitude are reported for each location. When using this data, please cite the original publication:Barker, J S F (2005). Population structure and host-plant specialization in two Scaptodrosophila flower-breeding species. Heredity 94: 129-138