cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28768208.v1
title: Supplementary Material for: Clinical Features, Diagnostic Implications, And Outcomes of Amyotrophic Lateral Sclerosis and Myasthenia Gravis Overlap Syndrome: A Systematic Review

description: Objective: This review aims to summarize the current evidence of reported myasthenia gravis (MG) and amyotrophic lateral sclerosis (ALS) overlap syndrome regarding clinical and laboratory features, diagnostic implications, management, outcomes, and comorbid conditions to raise awareness among healthcare providers and aid in proper care provision. Methods: Recently, a few cases of an unusual association between both diseases have been reported. PubMed, Scopus, and Web of Science were searched from inception until May 2024 to identify eligible studies. After the screening and data extraction, 20 studies with 42 cases suffering from ALS and MG were included. Results: 42 cases were categorized into four groups as follows: The first group had 26 cases with MG onset (range 26-82 years) preceding ALS (range 46-83 years). The second group had 9 cases with ALS (range 34-89) preceding MG (range 40-89 years). The third group comprised 5 cases of ALS with positive acetylcholine receptor antibodies but without clinical manifestations of MG. The fourth group involved 2 cases of ALS with initial ocular symptoms that were unresponsive to MG treatments. Conclusion: The onset of new ptosis or diplopia in ALS patients should prompt clinicians to consider the possibility of a coexisting condition or alternative diagnosis. Additionally, positive acetylcholine receptor antibodies alone are insufficient to diagnose MG if ALS coexists. In patients with ALS, repetitive nerve stimulation tests may be less sensitive for detecting MG. Thus, diagnosing MG in ALS patients should rely on clinical presentation and response to empirical treatment.
DOI: 10.6084/m9.figshare.14754468.v1
title: Artifact and instructions to generate experimental results for the Euro-Par 2021 paper: "Sustaining Performance While Reducing Energy Consumption: A Control Theory Approach"

description: This artifact contains the code to reproduce experiments and data analysis of the paper "Sustaining Performance While Reducing Energy Consumption: A Control Theory Approach" by S. Cerf, R. Bleuse, V. Reis, S. Pernarnau and É. Rutten.This artifact also contains the data collected and used to produce the figures of the paper.<br>This artifact is provided as a tar archive.Scripts are provided as bash, Python and R programs.The data format is a compressed tar archive documented by the Python extraction code.<br>The dataset is licensed under CC-BY 4.0. See the source code for their respective licenses.<br>
DOI: 10.6084/m9.figshare.14597148.v1
title: Memory performance

description: Mean item memory performances; see https://osf.io/jbrsa/<br>
DOI: 10.6084/m9.figshare.11815134.v1
title: Imaging Fluorescence Measurements of Black Plastic Particles Measured With 450 nm Excitation and a demonstrator system

description: The data contains imaging fluorescence measurements of black plastic particles in the spectral range from 500 nm to 900 nm. The files are stored in the envi-format used typically for hyperspectral data. Therefore there are two files for each measurement: the data (.envi) and the header-file (.envi.hdr). The files can be opened with software like ENVI or the Imanto<i>viewer </i>(https://www.iws.fraunhofer.de/de/geschaeftsfelder/chemische_oberflaechentechnik/prozess_monitoring/produkte/imanto.html). The measurements were made with a demonstrator system developed for imaging fluorescence measurements in an industrial like environment. For excitation four 4000 mW 450 nm diode laser covering a length of 40 cm were used. The samples were also illuminated with a 870 nm LED. For each polymer several thousand particles were measured. For the measurements the plastic particles were placed on a conveyer belt and measured with the hyperspectral scanning system. Three measurements were carried out per polymer.The measured polymers are HDPE, PP, SBR, PA6, PA6 with glassfiber, PA66, PA66 with glass fibre, PA66 with flame retarder, TPU, TPE, TEEE, PPS, PBT and POM. The samples were obtained from a recycling plant and the plastic was grinded cryogenically at the plant.The data was used to train classification models. The objective is to use the method for recycling black plastics.<br><br>
DOI: 10.6084/m9.figshare.4487687.v1
title: Terrestrial macrofungal diversity from the tropical dry evergreen biome of southern India and its potential role in aerobiology - PONE - D -16- 26852 - Additional DATA files

description: Additional files for the paper, "Terrestrial macrofungal diversity from the tropical dry evergreen biome of southern India and its potential role in aerobiology"are provided here. This mutiple data file set includes the following,1. Gallery of macrofungi/mushroom images 2. Study area map3. Spore dispersal calculations for continuous spore release4. Macrofungi found on other tropical dry evergreen biome in the world5. Bootstrap simulations6. List of species and abundance7. Additional information on species8. Aerobiology associated calculations9. Terminal velocity of fungal spores calcualtions10. List of ground dwelling and tree dwelling macrofungi species.<br>
DOI: 10.6084/m9.figshare.7671836.v4
title: Swimming strategies and energetics of endothermic white sharks during foraging

description: Dataset used in the linear mixed-effect model analyses. Watanabe et al. (2019) Swimming strategies and energetics of endothermic white sharks during foraging. J. Exp. Biol.
DOI: 10.6084/m9.figshare.23636123.v1
title: Peanut shape from The <i>θ</i>-formulation of the two-dimensional elastica: buckling and boundary layer theory

description: mathematica file to reproduce an elastic ring deformed into a peanut shape
DOI: 10.6084/m9.figshare.741264.v9
title: Informing the general public about cell migration - an outreach resource

description: Outreach activities become an increasingly important part of a researcher's life, out of social responsibility as well as to meet expectations by research funding institutions. Yet, outreach activities are little supported by resources which provide guidance, strategies, examples and materials, and researchers are widely left alone with the task of re-inventing the wheel when starting to engage with the public. Whilst public platforms are slowly starting to be developed which provide support and resources for educational activities, initiative can also be taken at the grass root level to improve this situation. Here we show how final year undergraduate student projects can be used to deliver freely available outreach resources. Thus, the Faculty of Life Sciences at The University of Manchester runs projects on public engagement where students develop outreach exhibitions which they personally display on an open day at the Manchester Museum. We capitalised on this by using the subsequent project evaluation phase to further improve the content and design of the resource, guided by the practical experience made on the open day. As proof-of-concept we publish here the resource on the topic of cell migration together with the thoughts, rationale and strategies that have underpinned its development. We discuss the win-win situation this strategy provides for both students and researchers and how this approach can be further developed in the future, but also what grant-giving institutions can do to improve the status quo. [The reference for this article can be downloaded in different formats on the right]
DOI: 10.6084/m9.figshare.19069220.v2
title: Yunnan-Black carbon-DATA.xlsx

description: Global warming and human activities have significantly increased the wildfire risk in highly populated subtropical East Asia over recent decades; however, the factors driving fire occurrence on multiple timescales remain unclear. We present and analyze an observational dataset of fire for the Yunnan Plateau in southwestern China for the past 20 years, together with a Holocene fire history documented by four sedimentary black carbon records from four lakes on the Yunnan Plateau: lakes Dian, Xingyun, Qilu, and Yilong. Our aims were to explore the linkage between wildfires and natural and anthropogenic variables driving wildfire occurrence on multiple timescales. The results show that on a short timescale, more wildfires occurred in drier seasons, and on a longer timescale, more wildfires occurred during 6–2.8 cal kyr BP, when humidity decreased. In contrast, there was a moderate wildfire incidence during the relatively humid interval from 11.7 to 6 cal kyr BP. These observations indicate that fire activity is controlled by the humidity, against the background of the abundance of biofuel. The lowest degree of biomass burning occurred after ~2.8 cal kyr BP and was linked to an anthropogenic reduction of biomass availability, despite an increase in drought. This suggests the importance of active fire management and prescribed clearance measures, especially given projections of continued drought and increased vegetation cover.
DOI: 10.17632/xw44wv2g88
title: Dataset of Leak Simulations in Experimental Testbed Water Network

description: This is the first fully labeled open dataset for leak detection and localization in water distribution systems. This dataset includes two hundred and eighty signals acquired from a laboratory-scale water distribution testbed with four types of induced leaks and no-leak. The testbed was 47 m long built from 152.4 mm diameter PVC pipes. Two accelerometers (A1 and A2),  two hydrophones (H1 and H2), and two dynamic pressure sensors (P1 and P2) were deployed to measure acceleration,  acoustic,  and dynamic pressure data. The data were recorded through controlled experiments where the following were changed:  network architecture, leak type, background flow condition, background noise condition, and sensor types and locations. Each signal was recorded for 30 seconds. Network architectures were looped (LO) and branched (BR). Leak types were Longitudinal Crack (LC), Circumferential Crack (CC), Gasket Leak (GL), Orifice Leak (OL), and No-leak (NL). Background flow conditions included 0 L/s (ND), 0.18 L/s, 0.47 L/s, and Transient (background flow rate abruptly changed from 0.47 L/s to 0 L/s at the second 20th of 30-second long measurements). Background noise conditions, with noise (N) and without noise (NN), determined whether a background noise was present during acoustic data measurements. Accelerometer and dynamic pressure data are in ‘.csv’ format, and the hydrophone data are in ‘.raw’ format with 8000 Hz frequency. The file “Python code to convert raw acoustic data to pandas DataFrame.py” converts the raw hydrophone data to DataFrame in Python.
DOI: 10.6084/m9.figshare.7550174.v2
title: Drusen diagnosis comparison datasets

description: This is the dataset used in the paper "Drusen diagnosis comparison between hyper-spectral and color retinal images".
DOI: 10.6084/m9.figshare.3561921.v1
title: Appendix C. Tables of model selection results based on Akaike Information Criteria corrected for finite sample size (AICc).

description: Tables of model selection results based on Akaike Information Criteria corrected for finite sample size (AICc).
DOI: 10.6084/m9.figshare.6448346.v1
title: GLASS·PANACEA: AN EFFICIENT SOFTWARE FOR THE FORMULATION OF CERAMIC MATERIALS

description: GlassPanacea is an efficient software tool that combines several attractive technical features with ease of use. Its configuration leads to the intuitive handling and learning with accurate results, providing the users with flexibility in the selection of suitable chemicals for the formulation of glassy, partially glassy or crystalline ceramic materials, as well as speed and accuracy in the calculation of the relative proportions of each chemical in a batch. The software runs directly from an executable file with multiplatform support. Hence, it can be used on different operating systems, such as Windows, Linux and Mac OS, without installation. One of its highlights is the user-friendly interface that enables immediate application, even for operators with little computer experience. This makes GlassPanacea a very valuable tool for students, researchers and engineers who work on the development of ceramic materials using different synthesis techniques, such as melting, solid-state reaction, sintering and sol-gel processing. The archive containing the software, information for use and logo can be downloaded, free of charge, from http://www.certev.ufscar.br/research-1/glasspanacea-glass-and-ceramic-formulation-software.
DOI: 10.58120/upstate.28701557.v1
title: Tables_Oxidative stress-remodeled_H3K4me3

description: Oxidative Stress-Remodeled H3K4me3 in Hematopoietic Stem and Progenitor Cells Drives Non-Resolving Myelopoiesis in Diet-induced ObesityTable1_PLX032702_volcano_plot_v2_ND_GMP_vs_LSKTable2_PLX032702_volcano_plot_v2_HFD_GMP_vs_LSKTable3_LSK_PLX259429_volcano_plot_v2_H3K4me3_HFD_vs_H3K4me3_LFDTable4_GMP_PLX176062_volcano_plot_v2_H3K4me3_HFD_vs_H3K4me3_NDTable5_Curated_ATAC_Genes_hematopoiesis<br>
DOI: 10.6084/m9.figshare.21221750.v1
title: Laboratory experiments reveal the influences of amplitude and duration of cyclic loading on earthquake-triggered landslides

description: All the data comes from the experiment.
DOI: 10.17632/v5kc7chhpv
title: LivingLabHospital_Interpreted Location event logs

description: This event log consists of the interpreted location data of patients within a hospital facility.  This real-life event log is gathered by using Real-time Location Systems (RTLS).
DOI: 10.6084/m9.figshare.19127951.v1
title: Rogers+2022_NetworkModelingInVitroData.xlsx

description: These data are gene expression levels measured by qPCR with methods and results described in the following preprint article:<br>https://www.biorxiv.org/content/10.1101/2021.09.04.458984v1<br><br>
DOI: 10.17632/9d9dd5vvsc
title: A-Track: A new approach for detection of moving objects in FITS images

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We have developed a fast, open-source, cross-platform pipeline, called A-Track, for detecting the moving objects (asteroids and comets) in sequential telescope images in FITS format. The pipeline is coded in Python 3. The moving objects are detected using a modified line detection algorithm, called MILD. We tested the pipeline on astronomical data acquired by an SI-1100 CCD with a 1-meter telescope. We found that A-Track performs very well in terms of detection efficiency, stability, and proc... Title of program: A-TRACK Catalogue Id: AFBC_v1_0 Nature of problem Asteroid and comet detection. Versions of this program held in the CPC repository in Mendeley Data AFBC_v1_0; A-TRACK; 10.1016/j.cpc.2016.07.023
DOI: 10.6084/m9.figshare.26953963.v1
title: Supplementary Material for: p16 Immunohistochemical Patterns in Triple-Negative Breast Cancer: Clinical and Genomic Similarities of the p16 Diffuse Pattern to pRB Deficiency

description: Introduction: Triple-negative breast cancer (TNBC) is associated with alterations in the retinoblastoma pathway. As a consequence of retinoblastoma protein (pRB) loss, compensatory upregulation of p16 occurs due to the loss of phosphorylated pRB-mediated negative feedback on p16 expression. The aim of this study is to investigate the clinicopathologic and genomic characteristics associated with the diffuse pattern of p16 immunohistochemistry (IHC) in TNBC. Methods: The study analyzed surgically resected TNBC for whole-exome sequencing in 113 cases and for cDNA microarray in 144 cases. The p16 IHC results were classified into two patterns: diffuse and negative/mosaic. 
Results: In the entire cohort (n = 257), the diffuse pattern of p16 IHC was observed in 123 (47.9%) patients and the negative/mosaic pattern in 134 (52.1%). Bi-allelic RB1 inactivation was observed in 14.3% of patients with the diffuse pattern. The diffuse pattern of p16 IHC showed more frequent RB1 alterations and cell cycle progression signatures, a higher Ki-67 labeling index, more frequent chromosome segment copy number changes, a higher frequency of homologous recombination deficiency high, and immune-related signatures. PIK3CA mutations were more frequent in the negative/mosaic pattern. CCND1 amplification was identified in five cases, all with the negative/mosaic pattern
Conclusion: In TNBC, the diffuse p16 pattern shows clinical and genomic similarities to pRB-deficient tumors, suggesting shared characteristics. This suggests that p16 IHC testing may provide new therapeutic approaches, underscoring its potential clinical importance.
DOI: 10.4121/19761784.v1
title: Data underlying the PhD dissertation: Real-time Co-planning in Synchromodal Transport Networks using Model Predictive Control

description: This dataset is a collection of the results and the data behind the figures displayed in the PhD dissertation `Real-time Co-planning in Synchromodal Transport Networks using Model Predictive Control'. The research presented in this dissertation provides insights into how container transport can realistically be planned at the operational level in real-time when several different stakeholders own the vehicles. <br>
DOI: 10.4121/uuid:28fea23d-6984-4ed5-9755-3064988331f0
title: Questionnaire for Evaluating the Effects of Data, System, and Service Quality on Citizens' Trust

description: The dataset contains the questions asked in the survey over which quantitative data was collected to evaluate the effects of data quality, system quality, and service quality on citizens' trust.
DOI: 10.6084/m9.figshare.27162258.v1
title: A Global GPP Dataset simulated by the Vegetation Photosynthesis Model (VPM) but Water Stress was not considered

description: A global GPP dataset generated by the Vegetation Photosynthesis Model (VPM) but water stress (i.e., land surface water index, LSWI) was not considered as an input variable.<br>
DOI: 10.17632/2cy94j9w63
title: Journal of Methodology of Social Sciences and Humanities; No.90

description: Study of the relationship between philosophy, philosophy of social sciences and humanities, methodology and research method; 
 The role of philosophy and methodology of social sciences and humanities in the quantitative and qualitative improvement of the social sciences and humanities;
 Comparative study of philosophy and methodology of social sciences and humanities and natural sciences;
 Study of the evolution of philosophy and methodology of social sciences and humanities;
 Comparative examination of quantitative and qualitative research methods;
 Philosophical analysis of concepts used in the social sciences and humanities;
 The study of the philosophical and theological foundations of the production of religious and indigenous social sciences and humanities;
 Methodology of the production of religious and indigenous social sciences and humanities;
 Methodology of using religious texts in social sciences and humanities and social sciences;
 Methodology of Muslim scholars in social studies;
 The deficiencies of the social sciences and humanities in the field of goals, foundations, methods and achievements;
 Philosophical and methodological assessment of studies in the field of humanities and social sciences;
 Philosophical and methodological assessment of studies in the field of Islamic humanities and social sciences;
 Philosophical and methodological assessment of macro policies of the country in the scientific, economic, political, social and cultural fields

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles.
DOI: 10.6084/m9.figshare.11752740.v1
title: LBNLDataSynthesisInventory.pdf

description: This data set can be used to evaluate and benchmark the performance accuracy of FDD algorithms or tools. It contains operational data from physical experimentation as well as simulation. The data sets currently cover AHU-VAV systems and RTUs, and will be expanded over time to include additional building systems and fault conditions. They include data from commonly available measurement points, spanning system operations under a variety of fault-present and fault-free conditions. This operational data is paired with ground truth information as to which faults are present during which time periods.
DOI: 10.6084/m9.figshare.19932077.v1
title: stickels2021highly_SlideSeqV2_Mouse_OlfactoryBulb

description: stickels2021highly_SlideSeqV2_Mouse_OlfactoryBulb_Puck_200127_15.h5ad
DOI: 10.6084/m9.figshare.25689567.v1
title: Dataset CSV

description: Nowadays, a variety of intelligent systems for autonomous driving have been developed, which have already shown a very high level of capability. One of the prerequisites for autonomous driving is an accurate and reliable representation of the environment around the vehicle. Current systems rely on cameras, RADAR, and LiDAR to capture the visual environment and to locate and track other traffic participants. Human drivers, in addition to vision, have hearing and use a lot of auditory information to understand the environment in addition to visual cues. In this research, we present the sound signal processing system for auditory based environment representation.Sound propagation is less dependent on occlusion than all other types of sensors and in some situations is less sensitive to different types of weather conditions such as snow, ice, fog or rain. Various audio processing algorithms provide the detection and classification of different audio signals specific to certain types of vehicles, as well as localization.The ambient sound is classified into fourteen major categories consisting of traffic objects and actions performed. Additionally, the classification of three specific types of emergency vehicles sirens is provided. The presented approaches and methods have great potential to increase the accuracy of environment perception and, consequently, to improve the reliability and safety of autonomous driving systems in general.
DOI: 10.6084/m9.figshare.27607101.v1
title: <b>N-acetyl-tryptophan in acute kidney injury after cardiac surgery</b>

description: <b>Abstract</b><b>Background</b>: Cardiac surgery-associated acute kidney injury is a common serious complication after cardiac surgery. Currently, there are no specific pharmacological therapies. Our understanding of its pathophysiology remains preliminary.<b>Methods: </b>A total of<b> </b>2504 patients with and without acute kidney injury (AKI) following cardiac surgery were enrolled. High-performance liquid chromatography coupled with mass spectrometry was used for untargeted analysis of metabolites in plasma, identifying significant differential metabolites. Subsequently, a tandem liquid chromatography-mass spectrometry–based approach using isotope-labeled standard addition was performed for targeted analysis of the metabolic marker N-acetyl-tryptophan. The function of N-acetyl-tryptophan was determined using different renal injury mouse models and epithelial cellular models. The transcriptome sequencing, surface plasmon resonance and protein mutation were employed to explore the mechanism of N-acetyl-tryptophan on the kidney.<b>Results: </b>We identified a total of 32 differential metabolites related to AKI occurrence based on a cohort of 1042 patients. Among them, N-acetyl-tryptophan was elevated in plasma of cardiac surgery-associated acute kidney injury patients compared with those who do not develop AKI after cardiac surgery. The increased level of N-acetyl-tryptophan in plasma was confirmed by accurate targeted quantification. N-acetyl-tryptophan exhibited renal protective effects in I/R-, cisplatin-, and UUO-induced renal injury mouse models. Mechanistically, N-acetyl-tryptophan exerted renal protective effects by interacting with KEAP1 at 483 and 508 sites, resulting in Nrf2 nuclear translocation and the transcription of proteasome genes.<b>Conclusion:</b> N-acetyl-tryptophan plays a key role in kidney protection and provides a potential therapeutic strategy for the treatment of cardiac surgery-associated acute kidney injury.