cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.j00128.00013
title: DNA methylation data associated with sex in spinach
title: DNA methylation data associated with sex in spinach

description: DNA methylation, an important epigenetic modification, regulates the expression of genes and is therefore involved in the sex determination and sex differentiation of plants. spinach ((Spinacia oleracea L.), an important vegetable crop, was chosen as the research object. The results showed that: there was a difference in the degree of DNA methylation between male and female plants, which females had a higher degree of methylation.The data includes: (1) MSAP linker and primer sequence list used in this study; (2) Different methylation patterns and enzyme digestion reaction results table; (3) Genomic DNA electrophoresis map; (4) DNA digestion electrophoresis map; (5) Pre-amplification electropherogram; (6) Selective amplification electropherogram; (7) The number of bands amplified by each pair of primers in male individuals; (8) The number of bands amplified by each pair of primers in female individuals ; (9) Selective amplification of polypropylene gel electrophoresis; (10) Statistical table of MSAP amplification results of spinach male and female genomes; (11) Table of specific DNA methylation fragments in spinach
description: DNA methylation, an important epigenetic modification, regulates the expression of genes and is therefore involved in the sex determination and sex differentiation of plants. spinach ((Spinacia oleracea L.), an important vegetable crop, was chosen as the research object. The results showed that: there was a difference in the degree of DNA methylation between male and female plants, which females had a higher degree of methylation.The data includes: (1) MSAP linker and primer sequence list used in this study; (2) Different methylation patterns and enzyme digestion reaction results table; (3) Genomic DNA electrophoresis map; (4) DNA digestion electrophoresis map; (5) Pre-amplification electropherogram; (6) Selective amplification electropherogram; (7) The number of bands amplified by each pair of primers in male individuals; (8) The number of bands amplified by each pair of primers in female individuals ; (9) Selective amplification of polypropylene gel electrophoresis; (10) Statistical table of MSAP amplification results of spinach male and female genomes; (11) Table of specific DNA methylation fragments in spinach
DOI: 10.57760/sciencedb.j00133.00006
title: AND特征使用频率统计
title: AND特征使用频率统计

description: 参考Delgado等对特征的分类,本文将面向学术文献的AND特征分为作者特征、文献特征以及外部特征
description: 参考Delgado等对特征的分类,本文将面向学术文献的AND特征分为作者特征、文献特征以及外部特征
DOI: 10.57760/sciencedb.o00005.00003
title: Reactive gaseous nitrogen emissions Dataset from China’s croplands in 2014
title: 2014年中国农田气态活性氮排放数据集

description: Reactive gaseous nitrogen (including NH3, NOx, and N2O) emissions significantly affect Earth's climate system.We consider five types of Ngr emissions sources from synthetic and organic fertilizers applied to croplands: chemical and compound fertilizers, livestock manure spreading, rural excrement, cake fertilizer, and straw returning. We collect emissions source data from China's 377 prefectures based on a new bottom‐up, mass flow‐based approach and the most recent administrative planning efforts. This dataset includes NH3 emission data (NH3), N2O emission data (N2O) and NOx emission data. The naming rule of the data in zip file is: (data type)_(year).CSV. The dataset provides essential information for further sustainable N management and the interactions between agriculture and climate change.
description: Reactive gaseous nitrogen (including NH3, NOx, and N2O) emissions significantly affect Earth's climate system.We consider five types of Ngr emissions sources from synthetic and organic fertilizers applied to croplands: chemical and compound fertilizers, livestock manure spreading, rural excrement, cake fertilizer, and straw returning. We collect emissions source data from China's 377 prefectures based on a new bottom‐up, mass flow‐based approach and the most recent administrative planning efforts. This dataset includes NH3 emission data (NH3), N2O emission data (N2O) and NOx emission data. The naming rule of the data in zip file is: (data type)_(year).CSV. The dataset provides essential information for further sustainable N management and the interactions between agriculture and climate change.
DOI: 10.57760/sciencedb.j00104.00081
title: GO FAIR Brazil: A Challenge for Brazilian Data Science
title: GO FAIR Brazil: A Challenge for Brazilian Data Science

description: Figure 1 shows the three pillars of GO FAIR implementation networks (IN).
description: Figure 1 shows the three pillars of GO FAIR implementation networks (IN).
DOI: 10.57760/sciencedb.j00112.00021
title: Land use transfer matrix and landscape analysis data of Tangshan coastal area
title: 唐山滨海区土地利用转移矩阵及景观分析数据

description: Analysis of Tangshan coastal landscape transfer index from 1999 to 2020
description: Analysis of Tangshan coastal landscape transfer index from 1999 to 2020
DOI: 10.57760/sciencedb.j00104.00049
title: Building a Holistic Taxonomy Model for OGD-Related Risks: Based on a Lifecycle Analysis
title: Building a Holistic Taxonomy Model for OGD-Related Risks: Based on a Lifecycle Analysis

description: One table and four figures of this paper. Table 1 shows the lifecycle distribution of open government data (OGD)-related risks. Figure 1 presents analytical framework for case study based on the open government data (OGD) lifecycle. Figure 2 is a taxonomy model of open government data (OGD)-related risks. Figure 3 presents the lifecycle distribution of 14 types of open government data (OGD)-related risks. Figure 4 shows the number of the occurrence stages of 14 types of risks.
description: One table and four figures of this paper. Table 1 shows the lifecycle distribution of open government data (OGD)-related risks. Figure 1 presents analytical framework for case study based on the open government data (OGD) lifecycle. Figure 2 is a taxonomy model of open government data (OGD)-related risks. Figure 3 presents the lifecycle distribution of 14 types of open government data (OGD)-related risks. Figure 4 shows the number of the occurrence stages of 14 types of risks.
DOI: 10.57760/sciencedb.j00104.00056
title: Constructing and Cleaning Identity Graphs in the LOD Cloud
title: Constructing and Cleaning Identity Graphs in the LOD Cloud

description: Five tables and six figures of the paper. Table 1 shows evaluation of 200 owl:sameAs links, with each 40 links randomly chosen from a certain range of error degree. The percentages between parentheses are calculated without considering the links evaluated as “can’t tell”. Table 2 presents accuracy of the approach on the four manually evaluated samples, based on a threshold of 0.99. Links evaluated as “can’t tell” by the judges are discarded. Table 3 shows precision, recall and accuracy, based on two thresholds (0.99 and 0.4) for the Barack Obama identity set. Links evaluated as “can’t tell” by the judges are discarded.Table 4 is comparison of the original identity network closure, the closure (b) and (c), with the Gold Standard. Table 5 shows precision, recall and accuracy evaluation of the three closures. Figure 1 is the workflow of the identity network extraction, compaction and closure. Figure 2 depicts the distribution of identity set cardinality in Gim. The x-axis lists all 48,999,148 non-singleton identity sets. Figure 3 shows error degree distribution of all owl:sameAs statements in the LOD-a-lot. Figure 4 is comparison of the original identity network and its transitive closure, with the two newly constructed identity subgraphs.Figure 5 shows‘Barack Obama’ identity cluster. Figure 6 presents community structure of the‘Barack Obama’ identity cluster.
description: Five tables and six figures of the paper. Table 1 shows evaluation of 200 owl:sameAs links, with each 40 links randomly chosen from a certain range of error degree. The percentages between parentheses are calculated without considering the links evaluated as “can’t tell”. Table 2 presents accuracy of the approach on the four manually evaluated samples, based on a threshold of 0.99. Links evaluated as “can’t tell” by the judges are discarded. Table 3 shows precision, recall and accuracy, based on two thresholds (0.99 and 0.4) for the Barack Obama identity set. Links evaluated as “can’t tell” by the judges are discarded.Table 4 is comparison of the original identity network closure, the closure (b) and (c), with the Gold Standard. Table 5 shows precision, recall and accuracy evaluation of the three closures. Figure 1 is the workflow of the identity network extraction, compaction and closure. Figure 2 depicts the distribution of identity set cardinality in Gim. The x-axis lists all 48,999,148 non-singleton identity sets. Figure 3 shows error degree distribution of all owl:sameAs statements in the LOD-a-lot. Figure 4 is comparison of the original identity network and its transitive closure, with the two newly constructed identity subgraphs.Figure 5 shows‘Barack Obama’ identity cluster. Figure 6 presents community structure of the‘Barack Obama’ identity cluster.
DOI: 10.57760/sciencedb.j00104.00083
title: Considerations for the Conduction and Interpretation of FAIRness Evaluations
title: Considerations for the Conduction and Interpretation of FAIRness Evaluations

description: Figure 1 shows workﬂow of the interplay between manual and automated assessments.
description: Figure 1 shows workﬂow of the interplay between manual and automated assessments.
DOI: 10.57760/sciencedb.j00104.00072
title: FAIR Data and Services in Biodiversity Science and Geoscience
title: FAIR Data and Services in Biodiversity Science and Geoscience

description: Figure 1 shows Digital Object Architecture enabling networked data and information interoperability and management across heterogeneous systems. Figure 2 shows DiSSCo Digital specimen concept (top) and relations to Digital Object Architecture concepts (light blue) and components (dark blue). PID = persistent identifier. NSId = Natural Science Identifier.
description: Figure 1 shows Digital Object Architecture enabling networked data and information interoperability and management across heterogeneous systems. Figure 2 shows DiSSCo Digital specimen concept (top) and relations to Digital Object Architecture concepts (light blue) and components (dark blue). PID = persistent identifier. NSId = Natural Science Identifier.
DOI: 10.57760/sciencedb.j00133.00005
title: 预处理后数据集
title: 预处理后数据集

description: 对XML格式的语料集进行解析和去噪处理,提取句子所属的文章ID、章节ID、语句文本、语句标签、句子序号,并清除无效的噪声数据,如少数人为错误（句子长度过短、句子内容为公式符号等）。预处理后所得有效数据为34 590条。
description: 对XML格式的语料集进行解析和去噪处理,提取句子所属的文章ID、章节ID、语句文本、语句标签、句子序号,并清除无效的噪声数据,如少数人为错误（句子长度过短、句子内容为公式符号等）。预处理后所得有效数据为34 590条。
DOI: 10.57760/sciencedb.o00017.00001
title: Molecular, species diversity
title: Molecular, species diversity

description: Class Ophiuroidea pairwise distance values based on mitochondrial 16S and COI sequences, calculated using the Kimura 2-parameter method with 1,000 bootstrap replicates
description: Class Ophiuroidea pairwise distance values based on mitochondrial 16S and COI sequences, calculated using the Kimura 2-parameter method with 1,000 bootstrap replicates
DOI: 10.57760/sciencedb.o00005.00012
title: Drainage networks of Lancang-Mekong river basin (flow direction, flow accumulation, river networks)
title: 澜沧江-湄公河流域高精度汇流网络数据集（流向、汇流累积、矢量河网）

description: 1) Data content (including elements and significance)This data set contains information of flow direction, accumulation of vector river network of Lancang Mekong River Basin.2) Data sources and processing methodsIn this data set, the remote sensing stream buring (RSSB) method (Wang et al., 2021) is adopted, and the high-precision elevation model MERIT-DEM and Sentinel-2 optical imagery are fused.3) Data quality descriptionValidations show that this data set has high spatial accuracy (Wang et al, 2021).4) Data application achievements and ProspectsThis data set provides basic information of river networks, which can be used for hydrological model, land surface model, earth system model, as well as for mapping and spatial statistical analysis.
description: 1) Data content (including elements and significance)This data set contains information of flow direction, accumulation of vector river network of Lancang Mekong River Basin.2) Data sources and processing methodsIn this data set, the remote sensing stream buring (RSSB) method (Wang et al., 2021) is adopted, and the high-precision elevation model MERIT-DEM and Sentinel-2 optical imagery are fused.3) Data quality descriptionValidations show that this data set has high spatial accuracy (Wang et al, 2021).4) Data application achievements and ProspectsThis data set provides basic information of river networks, which can be used for hydrological model, land surface model, earth system model, as well as for mapping and spatial statistical analysis.
DOI: 10.57760/sciencedb.o00019.00013
title: In vitro long-term culture of cynomolgus monkey embryos to early neurulation stage (maca_RNA_rawdata)
title: In vitro long-term culture of cynomolgus monkey embryos to early neurulation stage (maca_RNA_rawdata)

description: Neurulation is the process of forming the neural tube. The complex characteristics of primate neurulation remain mysterious due to the limited accessibility of primate embryos at this stage. Here, we established a 3D prolonged in vitro culture (pIVC) system to support the cynomolgus monkey blastocyst developing to E25 to early neurulation. The pIVC E25 embryos highly recapitulated the critical events of their in vivo counterparts during early neurulation, which include the specialization of the neural plate, closure of the neural tube, regionalization of neural tube cells, specialization and migration of neural crest cells and differentiation of motor neurons and sensory placodes. Single-cell multi-omics analysis of the pIVC embryos further verified the specification of early neural cells, suggesting the pIVC embryos developing to a more advanced stage. Besides, the DNA methylation and chromosome accessibility of three germ layers were in-deep analyzed. This study will help to explore the characteristics and underlying mechanisms of primate neurogenesis, which will be of fundamental and clinical importance.
description: Neurulation is the process of forming the neural tube. The complex characteristics of primate neurulation remain mysterious due to the limited accessibility of primate embryos at this stage. Here, we established a 3D prolonged in vitro culture (pIVC) system to support the cynomolgus monkey blastocyst developing to E25 to early neurulation. The pIVC E25 embryos highly recapitulated the critical events of their in vivo counterparts during early neurulation, which include the specialization of the neural plate, closure of the neural tube, regionalization of neural tube cells, specialization and migration of neural crest cells and differentiation of motor neurons and sensory placodes. Single-cell multi-omics analysis of the pIVC embryos further verified the specification of early neural cells, suggesting the pIVC embryos developing to a more advanced stage. Besides, the DNA methylation and chromosome accessibility of three germ layers were in-deep analyzed. This study will help to explore the characteristics and underlying mechanisms of primate neurogenesis, which will be of fundamental and clinical importance.
DOI: 10.6084/m9.figshare.21173815
title: Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China

description: Data for：Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China
DOI: 10.6084/m9.figshare.21173815.v2
title: Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China

description: Data for：Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China
DOI: 10.57760/sciencedb.o00049.00002
title: Raw Data for the article "Discovery, Optimization and Evaluation of 1-(Indolin-1-yl)ethan-1-ones as Novel Selective TRIM24 Bromodomain Inhibitors"
title: Raw Data for the article "Discovery, Optimization and Evaluation of 1-(Indolin-1-yl)ethan-1-ones as Novel Selective TRIM24 Bromodomain Inhibitors"

description: This zip package includes all the raw data involving in the article "Discovery, Optimization and Evaluation of 1-(Indolin-1-yl)ethan-1-ones as Novel Selective TRIM24 Bromodomain Inhibitors"submitted to theJournal of Medicinal Chemistry.
description: This zip package includes all the raw data involving in the article "Discovery, Optimization and Evaluation of 1-(Indolin-1-yl)ethan-1-ones as Novel Selective TRIM24 Bromodomain Inhibitors"submitted to theJournal of Medicinal Chemistry.
DOI: 10.6084/m9.figshare.21173815.v1
title: Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China

description: Data for：Temperature, rainfall, day length and food availability are associated with variations in the sleeping behaviors of the white-headed langurs in a limestone forest of Southwest Guangxi, China
DOI: 10.57760/sciencedb.o00049.00007
title: Structure-Based Discovery and Optimization of Furo[3,2-c]pyridin-4(5H)-one Derivatives as Potent, Second Bromodomain (BD2)-Selective Inhibitors of BRD4
title: Structure-Based Discovery and Optimization of Furo[3,2-c]pyridin-4(5H)-one Derivatives as Potent, Second Bromodomain (BD2)-Selective Inhibitors of BRD4

description: This zip package includes all the raw data involving in the article "Structure-Based Discovery and Optimization of Furo[3,2-c]pyridin-4(5H)-one Derivatives as Potent, Second Bromodomain (BD2)-Selective Inhibitors of BRD4"submitted to the journal of the Journal of Medicinal Chemistry.
description: This zip package includes all the raw data involving in the article "Structure-Based Discovery and Optimization of Furo[3,2-c]pyridin-4(5H)-one Derivatives as Potent, Second Bromodomain (BD2)-Selective Inhibitors of BRD4"submitted to the journal of the Journal of Medicinal Chemistry.
DOI: 10.57760/sciencedb.o00113.00007
title: Spread of plasmids mediated antibiotic resistance genes from soil into the plant endophytic bacteria
title: Spread of plasmids mediated antibiotic resistance genes from soil into the plant endophytic bacteria

description: The profile is 16S rDNA v5-v7(515F-907R) sequence data from the pot experiment that study the spread of plasmid mediated ARGs into vegetable endophytic bacteria.Soil samples of several prieod during the 9 weeks incubation and endophytic bacteria of leaves and roots were all collected and sequenced. Sequences of 72 samples of soils，48 samples of endophytic bacteria and theculturable transconjugants ara submitted here.
description: The profile is 16S rDNA v5-v7(515F-907R) sequence data from the pot experiment that study the spread of plasmid mediated ARGs into vegetable endophytic bacteria.Soil samples of several prieod during the 9 weeks incubation and endophytic bacteria of leaves and roots were all collected and sequenced. Sequences of 72 samples of soils，48 samples of endophytic bacteria and theculturable transconjugants ara submitted here.
DOI: 10.57760/sciencedb.o00114.00029
title: Generative Mongolian Question Answering System Based on Deep Learning
title: 基于深度学习的生成式蒙古文问答系统研究

description: Question answering system is an important direction in artificial intelligence field. At present, the research on Mongolian Q&A system is still in its infancy, and its development is hindered by many factors, among which the biggest problem is that there is no publicly available Mongolian Q&A corpus. By collecting, screening, translating and proofreading existing Chinese Q&A corpus, this paper constructs Mongolian question answering corpus containing 80,000 question pairs. Based on the self-built Mongolian question answering corpus of 80,000 pairs, this paper uses Seq2seq +Attention and word2vec pretrained word vector for word embedding layer to study Mongolian question answering model. By comparison, it is found that Word2vec+ Bi-LSTM + LSTM-Attention model has the best performance in each evaluation index, and is more suitable for the realization of Mongolian question answering system. The study is a meaningful attempt.
description: Question answering system is an important direction in artificial intelligence field. At present, the research on Mongolian Q&A system is still in its infancy, and its development is hindered by many factors, among which the biggest problem is that there is no publicly available Mongolian Q&A corpus. By collecting, screening, translating and proofreading existing Chinese Q&A corpus, this paper constructs Mongolian question answering corpus containing 80,000 question pairs. Based on the self-built Mongolian question answering corpus of 80,000 pairs, this paper uses Seq2seq +Attention and word2vec pretrained word vector for word embedding layer to study Mongolian question answering model. By comparison, it is found that Word2vec+ Bi-LSTM + LSTM-Attention model has the best performance in each evaluation index, and is more suitable for the realization of Mongolian question answering system. The study is a meaningful attempt.
DOI: 10.57760/sciencedb.o00049.00008
title: Raw Data for the article "Discovery of the First Examples of Threonine Tyrosine Kinase PROTAC Degraders"
title: Raw Data for the article "Discovery of the First Examples of Threonine Tyrosine Kinase PROTAC Degraders"

description: This zip package includes all the raw data involving in the article "Discovery of the First Examples of Threonine Tyrosine Kinase PROTAC Degraders"submitted to the journal of the Journal of Medicinal Chemistry.
description: This zip package includes all the raw data involving in the article "Discovery of the First Examples of Threonine Tyrosine Kinase PROTAC Degraders"submitted to the journal of the Journal of Medicinal Chemistry.
DOI: 10.57760/sciencedb.o00005.00020
title: Global emission of Levoglucosan, K+ and OC
title: Global emission of Levoglucosan, K+ and OC

description: This dataset include the emission of levoglucosan, OC and K+ in different sources in 2013 yearly mean:The emission information about levoglucosan are end with LEVO (eg: EmisLEVO_Total)The emission information about OC are end with OCPO (hydrophobic) or OCPI(Hydrophilic).The emission information about K+ are end with K+ (eg: EmisK+_Total)Other emission species are based on the defaul setting of emission in GEOS-Chem model v12.3.0The datafile is in NetCDF format.
description: This dataset include the emission of levoglucosan, OC and K+ in different sources in 2013 yearly mean:The emission information about levoglucosan are end with LEVO (eg: EmisLEVO_Total)The emission information about OC are end with OCPO (hydrophobic) or OCPI(Hydrophilic).The emission information about K+ are end with K+ (eg: EmisK+_Total)Other emission species are based on the defaul setting of emission in GEOS-Chem model v12.3.0The datafile is in NetCDF format.