cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22190185.v2
title: NaneSoil

description: Soil samples were collected from plots located in the Irrigation District 023, San Juan del Rio, Queretaro during the period 2016-2018. NaneSoil contains most of the agronomic parameters necessary for the study of crop water requirements in different soils, and therefore, it is an excellent tool that can be used by farmers, academics, students, and people involved in crop production and research. The database includes 901 rows and 13 colums. The first row corresponds to the titles or attributes contained in the columns, as well as the units in which they are displayed. The thirteen columns are ordered as follows: sample identifier (A), UTM coordinates corresponding to zone 14 North (B and C), representative sample area (D), percentages of sand (E), silt (F) and clay (G), textural classification (H), bulk density (I), saturated moisture content (J), field capacity (K), permanent wilting point (L) and the saturated hydraulic conductivity (M). The USDA texture triangle was used for texture classification
DOI: 10.6084/m9.figshare.23949267.v2
title: Ambient VOC concentrations

description: The deposited dataset includes: (1) Ambient VOC concentrations in Nanjing suburban station; (2) Code for WRF-Chem version 4.1.
DOI: 10.6084/m9.figshare.24022542.v1
title: MergedFile

description: merged datasets from all seurat data
DOI: 10.6084/m9.figshare.25215602.v1
title: SECREMP Raw Coral Data.xlsx

description: Raw SECREMP composition data analyzed in the <i>Communications Earth & Environment</i><i> </i>manuscript titled, "Modern coral range expansion of southeast Florida falls short of Late Holocene baseline".
DOI: 10.6084/m9.figshare.28574816.v1
title: cEdU Index (Fig. 5G, H) - Rapamycin treatment during Starvation

description: Juveniles were dissociated in pools of 15 polyps. Polyps were continuously labeled with EdU (100uM, 2%DMSO) before dissociation, and fixed using Trypsin/formaldehyde. Cells were stained with 1μg/ml FxCycle violet DNA dye (Invitrogen), EdU was labelled with Alexa647 using a Click-it reaction, and mOr2 was detected with anti-dsRed (Rabbit, Takara Bio Clontech 632496) and goat-anti-rabbit Alexa568.Flow cytometry was performed a BD LSRFortessa (BD Life Sciences) and the mOr2 and EdU positive cells in samples were determined based on Alexa568 and Alexa647 fluorescence in comparison with the negative controls on cells within the cell cycle (based on DNA staining) using FlowJoV10.8 (BD Life Sciences)..wsp files contain the samples, gating strategy and cell populations used for the analysis in FlowJo.fcs files represent the individual flow cytometry output files that were analysed in the .wsp file
DOI: 10.6084/m9.figshare.7687826.v1
title: Supplementary Material for: Clinical Characteristics and Outcomes of Kidney Transplantation under Urgency Priority Condition

description: <b><i>Background:</i></b> In several countries, patients with end-stage renal disease who are ineligible for dialysis are considered urgency priority (UP) for kidney transplantation (KT) through distinct allocation rules. There are scarce published data on clinical features and outcomes after KT of these patients. <b><i>Methods:</i></b> We retrospectively reviewed and compared demographic and clinical pretransplant characteristics and outcomes after KT of all patients transplanted under UP allocation in a single Brazilian transplant center from January 10 to March 16 (<i>n</i> = 74) and 1: 1 patients transplanted under standard allocation in the same period (<i>n</i> = 74). A propensity score (PS) matching analysis was performed to evaluate risk factors for death-censored graft loss. <b><i>Results:</i></b> UP KT group presented higher percentage of women (58.1 vs. 33.8%, <i>p</i> = 0.005), higher class I (22.2 ± 32.9 vs. 13.1 ± 25.3%, <i>p</i> = 0.027) and class II panel reactive antibodies (11.5 ± 24 vs. 5.2 ± 19.1%, <i>p</i> = 0.002), higher HLA mismatches (4.9 ± 0.9 vs. 3.7 ± 1.2, <i>p</i> &lt; 0.001), higher percentage of retransplants (27 vs. 4.1%, <i>p</i> &lt; 0.001), and spent longer time on dialysis off the waiting list (WL; 54.5 ± 52.5 vs. 31.2 ± 29.0 months, <i>p</i> = 0.03). After transplantation, UP KT patients presented longer hospital stay (29.3 ± 35.7 vs. 18.5 ± 19.5 days, <i>p</i> = 0.003) and inferior death-censored graft survival at 3 years (82 vs. 95.8%, log rank = 0.016), with 33.3% of graft losses due to vascular thrombosis. In PS-matched multivariable analysis, UP status hazard ratios (HR 4.791, 95% CI 1.052–21.722, <i>p</i> = 0.042) and donor age (HR 1.071, 95% CI 1.003–1.145, <i>p</i> = 0.041) were independent risk factors for death-censored graft loss. <b><i>Conclusion:</i></b> Patients transplanted under UP status remained a longer time on dialysis off the WL, suggesting that long-term dialysis led to exhaustion of accesses. After transplantation, outcomes are inferior and UP status was a risk factor for graft loss. These results point to the need for local policies to encourage and monitor the early referral to KT.
DOI: 10.17632/hjd5wz5tyd
title: The phenylalanine-and-glycine repeats of NUP98 oncofusions form condensates that selectively partition transcriptional coactivators Ahn et al

description: Micrographs of U20S 2-6-3 (lac array cells) analyzed for partitioning of cofactors or reporter activation by NUP98 IDR, FtoA mutant, or control (CFP-LacI without fusion).
DOI: 10.6084/m9.figshare.21046987.v1
title: Non-LPEM Data for PEG Diffusivity Paper

description: Compiled FRAP, partitioning, and swelling data for solute transport in multi-arm PEG hydrogels as well as structural predictions of solute diffusivity in those hydrogels using the swollen polymer network model.
DOI: 10.6084/m9.figshare.23628471.v1
title: Placenta PE, single cell RNAseq cellranger files (raw data). Admati, Skarbianskis et al.

description: Raw data from scRNAseq experiments on human placenta from preeclampsia and matched control. The experiment were done using 10Xgenomics V3 (nextGem) technology. Each sample have three files as in normal outpt from cellranger pipeline, samplename_matrix.mtx, samplename_barcodes.tsv, samplename_features.tsv.
DOI: 10.6084/m9.figshare.28945844.v2
title: (Near-complete) T2T assembly of the Gila monster, data freeze (May 2025)

description: Curated genome assembly of a female Gila monster (<i>Heloderma suspectum</i>).Assembled from UL-ONT and phased with HiC data using Hifiasm and scaffolded with HiC data using Pretext.Gene annotations were produced using Liftoff from the Southern Alligator Lizard (<i>Elgaria multicarinata</i>) genome RefSeq annotations (GCF_023053635.1).<br><br>
DOI: 10.6084/m9.figshare.9752804.v2
title: Copepod movement data in response to copper and kairomones

description: This data set contains individual tracking data from Tigriopus brevicornis which where exposed copper and kairomones. Together with the supplementary files from the publication's electronic appendix you can recreate the analysis of the manuscript "THE HIDDEN DIMENSION – CONTEXT-DEPENDENT EXPRESSION OF REPEATABLE BEHAVIOUR IN COPEPODS". https://doi.org/10.1002/etc.4688 In the publication you will also find details about the experimental conditions.<br>Explanation of columnsBottleID - identifies a unique bottle with one animal insideUniqueID - represents a single movie recordingUniqueIDTrackID - identifies a unique track within a recordingRun - represent the sequential recording of a bottleYear- YearDate - month day MMDDExpday - the day the experiment startedMovie - not usedFrame - Frame in the movieX - position on the x-axisY - position on the y-axisvelocity - not used… entry “speed” is correctnetdistance - in px.max_length - length of the track in framesmean.time - averaged frame of speed calculationspeed - frame to frame speed in mm/snumber.of.frames - number of frames of the uniqueTrackTreatment - applied treatment to the bottle.Starttime - date and star time based on sometimes wrong dates from the raspberry pi Copper - Copper or NoCopper in the treatmentKairomone - 2 Levels: Kairomone, NoKairomoneAlive.at.end - was the focal animal alive (1) or dead (0)nauplii.at.end - did nauplii hatch during the experimental time (1) or not (0)eggsacatend - did the female have an eggsac at the end (1) or not(0)pHbefore - pH value of the water beforepH - pH afterSalinity - PSULabel - picture ID from which the animal was measuredLength - length in pixels. Lengthinmm - length of the animal in mmX1mminpix - 1 mm in pixelsSizeMM - size of the animal in pixelsYmm - watercolumn height in mm<br><br><br><br>
DOI: 10.17632/5p38f8wxg3
title: Ecological innovation, economic policy uncertainty and carbon emissions

description: Data on Ecological innovation, economic policy uncertainty, and carbon emissions for 18 countries
DOI: 10.17632/j2rp33xdhr
title: Impact of AI in aeronautics Use Cases

description: Impact of AI in aeronautics: 100 use cases from different aeronautics companies: Airbus, Boeing, Air France, Safran, EasyJet, Dassault Aviation, Altair, etc.
DOI: 10.17632/kkp78tg94j
title: Data for: On the origin of rheumatoid factors: insights from analyses of variable region sequences

description: Data for: On the origin of rheumatoid factors: insights from analyses of variable region sequences
DOI: 10.6084/m9.figshare.22107818.v1
title: Rscript_Yu-RongLiu_20230216

description: The R script is associated with Yu-Rong Liu et al., containing the Gmulti model, nested PERMANOVA, and random sampling test.
DOI: 10.6084/m9.figshare.22180984.v2
title: Questionnaire

description: Questionnaire on Knowledge, attitude and practices of medical undergraduates in India towards COVID-19
DOI: 10.6084/m9.figshare.26106289.v2
title: AVOC_temp_data

description: Temperature-driven AVOC emissions; all observational & simulation data
DOI: 10.6084/m9.figshare.29064707.v1
title: Print screens of the "No, you are not a misogynist" (Όχι, Δεν Είσαι Μισογύνης - ΟΔΕΜ) Facebook Page posts in January 2025

description: These are the posts (print screens) of the Facebook Page «No, you are not a misogynist» (Όχι, Δεν Είσαι Μισογύνης - ΟΔΕΜ) on January 2025, that are the corpus analysis of the manuscript: «The Greek Manosphere: The Case of the "No, you are not a misogynist" Facebook Page».
DOI: 10.6084/m9.figshare.7553999.v1
title: Supporting data for Stephens et al.: The limits to population density in birds and mammals

description: <b>Supplementary data for the Ecology Letters paper: The limits to population density in birds and mammals (by Stephens, Vieira, Willis & Carbone).</b><br><br><br><b>The data set contains the following columns:</b><br>Class = Taxonomic class (AVES, birds; or MAMMALIA, mammals);<br>Order = Taxonomic order;<br>Species = Latin binomial;<br>Density.source = compendium from which the density estimate was obtained (see details below);<br>Mass.kg = Body mass in kilograms;<br>Density.km2 = Density in number of individuals per square kilometre;<br>logMass = Log to base 10 of the body mass;<br>logDensity = Log to base 10 of the density;<br>Guild = Trophic guild, coarsely partitioned into 3 categories (Herbivore, Omnivore or Carnivore);<br>Guild.source = compendium from which the guild information was obtained (see further below).<br><br><br><b>Density sources</b><br>Densities are taken from the cited papers and compendia. Reference details are given in the second sheet of the Excel file.<br><br><br><b>Guild sources</b><br>Guild data for birds were taken from the BirdLife data base of the birds of the world. For mammals, guild data are predominately from the Animal Diversity Web (ADW; see Myers et al. 2016 The Animal Diversity Web. http://animaldiversity.org.). A smaller number are from the Pantheria data sets (Jones et al. 2009 PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology, 90, 2648–2648) and from the IUCN Red List (IUCN 2018 The IUCN Red List of Threatened Species. http://www.iucnredlist.org). Finally, a small number of guild assignments link to specific web sources or give specific citations (Details of which are in the 3rd sheet of the Excel file).
DOI: 10.17632/3vx6xsf8kz
title: Dataset on the Impact of Prophylactic Cranial Irradiation, with and without hippocampal avoidance, on Quality of Life and Neurocognitive Function in Small-Cell Lung Cancer Patients

description: The dataset comprises the assessments of 15 patients suffering Small-Cell Lung Cancer (SCLC). They are divided into two groups depending on the type of radiotherapy received (without or with hippocampus avoidance; PCI and HA-PCI respectively). The initial number of participants were nine for PCI and six for HA-PCI groups. In the subsequent assessments at 3, 6, 12, and 24 months, the number of participants decreases due to attrition and mortality. Additionally, the dataset includes various descriptive variables about the participants, specifically sex, age, and years of education.
DOI: 10.17632/4s7t68vw6h
title: Meta-analysis of Triticale effects on Broilers performance

description: 1. Microsoft Excel file presenting the extracted data of the meta-analysis: (1) author, (2) year of publication, (3) experimental starting age (4) experimental period (5) broiler strain (6) treatment. Extracted outcome data included (1) live body weight, (2) body weight gain, (3) feed intake, and (4) feed conversion ratio. 
2. Body weight gain cvs files
3. Feed intake cvs files
4. Feed conversion ratio cvs files
5. Live body weight cvs files
DOI: 10.17632/c8p4d734p7
title: Data for: Between Geography and Transport: A Scientometric Analysis of Port Studies in Journal of Transport Geography

description: The list of papers that are included in this study for analysis.
DOI: 10.6084/m9.figshare.23576781.v1
title: Zhang et al., 2023, <strong>Intraoceanic Subduction System within the Neo-Tethys: Evidence from Late Cretaceous Arc Magmatic Rocks of the Eastern Himalaya</strong>

description: Supporting information of Zhang et al., 2023 paper (<strong>Intraoceanic Subduction System within the Neo-Tethys: Evidence from Late Cretaceous Arc Magmatic Rocks of the Eastern Himalaya) for journal</strong> <em>Geochemistry, Geophysics, Geosystems</em>
DOI: 10.6084/m9.figshare.27964605.v1
title: Table all - APEX_STING.xls

description: HEK293T cells stably expressing doxycycline-induced APEX-STING. We treated the cells with diABZL for different times (0.5h, 1h, 2h, 3h, 4h, 6h, 8h, 12h, 24h), and then collected for MS. the data was presented as Log2FC.log2FC_T0000_BP vs T0000_noBPT00000-BP means 0 hours post-diABZL treatment with BP treatmentT00000-noBP means 0 hours post-diABZL treatment without BP treatment ( which is a negative control for each time point).
DOI: 10.6084/m9.figshare.3544424.v1
title: Appendix A. A table of pollinating bee species observed on Echinacea angustifolia heads.

description: A table of pollinating bee species observed on Echinacea angustifolia heads.
DOI: 10.6084/m9.figshare.5048437.v1
title: Supplementary Material for: Higher Ultrafiltration Rate Is Associated with Longer Dialysis Recovery Time in Patients Undergoing Conventional Hemodialysis

description: <i>Background:</i> Increased mortality and morbidity are reported in association with high ultrafiltration rate (UFR) and with long dialysis recovery time (DRT). We studied the association between UFR and DRT. <i>Methods:</i> This is a cross-sectional, observational study was conducted. Patients on thrice-weekly hemodialysis (HD) with self-reported DRT between August and December 2014 were included. We examined the association of 30-day average UFR with recovery time. <i>Results:</i> The total number of patients included in this study was 2,689. DRT in categories of immediate recovery, &gt;0-≤2, &gt;2-≤6, &gt;6-≤12, and &gt;12 h, were reported in 27, 28, 17, 9, and 20% of the patients respectively. In multivariable analysis, longer DRT was associated with female gender, non-black race, higher body weight, lower serum albumin, chronic heart failure, cerebrovascular disease, missed dialysis sessions, higher pre-dialysis systolic blood pressure, and larger UF volume. Compared to UFR of &lt;10, UFR ≥13 mL/kg/h was associated with longer DRT, OR of 1.16 (95% CI 0.99-1.36), and 1.28 (95% CI 1.06-1.54) in the unadjusted and the adjusted analyses respectively. Intradialytic hypotension was also associated with longer DRT in the unadjusted (per 10% higher frequency, OR 1.04 [95% CI 1.01-1.07]) and adjusted analyses (OR 1.03 [95% CI 1.00-1.07]). <i>Conclusion:</i>Long recovery time is common after HD. Rapid fluid removal is associated with longer DRT.
DOI: 10.17632/z8dz2pjf8c
title: 18 brumario de las libertades individuales o ¿cómo y por qué la masa prefiere la seguridad a la libertad y al final pierde ambas?

description: Se describe cómo el autoritarismo ha resurgido en el siglo XXI y por qué muchas personas aún creen que la libertad individual no es la primera necesidad.
DOI: 10.6084/m9.figshare.24635379.v1
title: JAPPL-00491-2023 Supplemental Material

description: Supplementary data for the manuscript JAPPL-00491-2023.
DOI: 10.17632/5ppm9ph565
title: Trace elements dataset in marine sediments along Egyptian shores

description: A comprehensive dataset concerning the geochemical composition of unconsolidated shallow marine sediments collected along coastal areas of Northern Nile Delta and Egyptian sector of Red Seas is presented.
DOI: 10.17632/zzdwh2c53k
title: Research data-Correlations between Vp and SPT-N

description: Raw data for the research conducted in Oaxaca, Mexico, in order to find strong correlations between Vp and SPT-N. This dataset includes data from the geotechnical investigation and field research.
DOI: 10.6084/m9.figshare.15000384.v3
title: A Human Mobility Dataset Collected via LBSLab

description: Location-Based Services (LBS) have been prosperous owing to technological advancements of smart devices. Analyzing location based user generated data is a helpful way to understand human mobility patterns, further fueling applications such as recommender systems and urban computing. In this data descriptor, we introduce a dataset collected by LBSLab, a smartphone-based system implemented as a mini-program in the WeChat app, designed for large scale data collection from the smartphones of the participants with their informed consent. We provide activity data of multiple types including logins, profile viewing, weather checking, and check-ins with location information (latitude and longitude), POI and mood indicated, collected from 467 users over a duration of 11 days. We present some basic data analysis and expect the reuse of the data will allow researchers to better understand user behaviors of LBSs, human mobility, and also temporal and spatial characteristics of people’s mood.<br>For further information about the LBSLab system, you can check out our position paper here: https://user.informatik.uni-goettingen.de/~ychen/papers/LBSLab-UbiComp18.pdf<br>And also the Youtube video here: https://www.youtube.com/watch?v=m8r-1jqvYWc
DOI: 10.6084/m9.figshare.19583692.v1
title: RT vs. AF.zip

description: Output files (.pdb) of the structural predictions made by RoseTTAFold and AlphaFold2 on a subset protein sequences (n=113) of Acidithiobacillus ferrooxidans ATCC23270. <br> The comparison results show that the predicted models from both methods agree well with each other with average pairwise TM-score of 0.93 and average pairwise RMSD of 1.58.
DOI: 10.6084/m9.figshare.3084130.v1
title: IQGAP1 is associated with nuclear envelope reformation and completion of abscission

description: The final stage of mitosis is cytokinesis, which results in 2 independent daughter cells. Cytokinesis has 2 phases: membrane ingression followed by membrane abscission. IQGAP1 is a scaffold protein that interacts with proteins implicated in mitosis, including F-actin, myosin and CaM. IQGAP1 in yeast recruits actin and myosin II filaments to the contractile ring for membrane ingression. In contrast, we show that mammalian IQGAP1 is not required for ingression, but coordinates nuclear pore complex (NPC) reassembly and completion of abscission. Depletion of IQGAP1 disrupts Nup98 and mAb414 nuclear envelope localization and delays abscission timing. IQGAP1 phosphorylation increases 15-fold upon mitotic entry at S86, S330 and T1434, with the latter site being targeted by CDK2/Cyclin A and CDK1/Cyclin A/B <i>in vitro</i>. Expressing the phospho-deficient mutant IQGAP1-S330A impairs NPC reassembly in cells undergoing abscission. Thus, mammalian IQGAP1 functions later in mitosis than its yeast counterpart to regulate nuclear pore assembly in a S330 phosphorylation-dependent manner during the abscission phase of cytokinesis.
DOI: 10.17632/hnt5563ysh
title: Clinician of the Future - survey data

description: 2023 survey of 2,607 clinicians from 116 countries (building on a 2022 survey conducted with IPSOS). Fieldwork April and May 2023.
Methodology: a random sample of clinicians (doctors and nurses in primary and secondary care) from a variety of sources. Survey sent branded on behalf of Elsevier.
Survey tool: online survey available in English, Spanish, Chinese (simplified), French, German, Japanese and Portuguese.
DOI: 10.6084/m9.figshare.11371884.v3
title: Replication Data for "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia"

description: This folder includes code and data to replicate the analysis performed in "To racketeer among neighbors: spatial features of criminal collaboration in the American Mafia" (Andris and DellaPosta, et al. 2021) in the International Journal of Geographical Information Science. The dataset includes a CSV nodelist of mafia members by name, family affiliation and spatially-joined geographical factors, and an undirected edgelist (CSV) of their connections. The executable code includes four JAVA files and one text file that contains executable R code.
DOI: 10.17632/67854cyf78
title: Syngas-hydrogen UQ data

description: We report here the effect of fuel variability on high hydrogen syngas combustionphysicochemical properties at various equivalence ratios. The novel aspect here is the uncertainty effect of H2:CO ratio on fluctuation of some industrial relevant quantities such as flame temperature, flame speed, and NO emission. Unlike previous studies discussing the role of precise H2:CO ratio on those quantities, we consider here that the ratio is never precise, and is always coupled with small uncertainties described by probability density function (PDF). The final reported effect is, e.g. the fluctuation of flame speed (mean+variance) rather than flame speed (mean only). We used UQTk-3.0.4 for pre- and post-processing data obtained from 1D PREMIX module of CHEMKIN-PRO. The data structure is well-defined using relevant file name associated with respective descriptions. Note: the presented datasets are generated with one in-house script, hence the data structure are roughly the same. For some data which are not calculated from PREMIX such as CO emission level (NUI-Galway), out script does not allow empty or 0 number to be used for UQ, a fixed number such as 1.000000 is hence used. Because of that, when users see weird data such as a column of 1.00000 in a text file, it merely means that the data is not retried.