cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9565850
title: MOESM1 of Metabolic engineering of Bacillus megaterium for heparosan biosynthesis using Pasteurella multocida heparosan synthase, PmHS2

description: Additional file 1: Figure S1. Standard curve used for heparosan quantification by LCMS disaccharide analysis. Figure S2. Shake flask heparosan titers from various combinations of induction OD600 values (0.20, 0.33, 0.50, 0.75), lengths of induction periods (14 h, 24 h or 48 h), and induction temperatures (30 °C and 37 °C) in M9+ medium. Figure S3. (A) Sugar consumption profile for DASGIP bioreactor growth of heparosan-producing B. megaterium strain over 24 h period. (B) Standard curve for HPLC quantification of glucose and xylose in fermentation broth. Figure S4. 1H NMR spectrum of heparosan product from E. coli K5 prepared as previously described (17). Figure S5. Dextran standards used as a MW calibrant for gel permeation chromatography–high performance liquid chromatography (GPC–HPLC) measurement of the relative molecular mass properties of B. megaterium heparosan products. Figure S6. Overlaid molecular weight profiles of various heparosan products measured by GPC-HPLC in Figure 7. Molecular weights were determined using dextran calibration standards as indicated by the labeled arrows.
DOI: 10.6084/m9.figshare.9565856
title: Additional file 10 of MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens

description: Phylogenetic analysis for the 301 global Pst isolates, 55 Ethiopian Pst-infected field samples and Pst isolates representative of several major genetic groups, with bootstrap values. Data for the Ethiopian Pst isolates and representative genetic group isolates were generated on the MinION platform. Newick format. (NEWICK 21 kb)
DOI: 10.6084/m9.figshare.9565850.v1
title: MOESM1 of Metabolic engineering of Bacillus megaterium for heparosan biosynthesis using Pasteurella multocida heparosan synthase, PmHS2

description: Additional file 1: Figure S1. Standard curve used for heparosan quantification by LCMS disaccharide analysis. Figure S2. Shake flask heparosan titers from various combinations of induction OD600 values (0.20, 0.33, 0.50, 0.75), lengths of induction periods (14 h, 24 h or 48 h), and induction temperatures (30 °C and 37 °C) in M9+ medium. Figure S3. (A) Sugar consumption profile for DASGIP bioreactor growth of heparosan-producing B. megaterium strain over 24 h period. (B) Standard curve for HPLC quantification of glucose and xylose in fermentation broth. Figure S4. 1H NMR spectrum of heparosan product from E. coli K5 prepared as previously described (17). Figure S5. Dextran standards used as a MW calibrant for gel permeation chromatography–high performance liquid chromatography (GPC–HPLC) measurement of the relative molecular mass properties of B. megaterium heparosan products. Figure S6. Overlaid molecular weight profiles of various heparosan products measured by GPC-HPLC in Figure 7. Molecular weights were determined using dextran calibration standards as indicated by the labeled arrows.
DOI: 10.6084/m9.figshare.9565856.v1
title: Additional file 10 of MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens

description: Phylogenetic analysis for the 301 global Pst isolates, 55 Ethiopian Pst-infected field samples and Pst isolates representative of several major genetic groups, with bootstrap values. Data for the Ethiopian Pst isolates and representative genetic group isolates were generated on the MinION platform. Newick format. (NEWICK 21 kb)
DOI: 10.6084/m9.figshare.9563897
title: simulation and experimental data.xlsx

description: Bus Voltage Stabilization Control of Photovoltaic DC Microgrid Based on Fuzzy-PI Dual-mode Controller
DOI: 10.6084/m9.figshare.9563579
title: Small RNA sequencing identify miRNAs involved in pomegranate female sterility

description: Pomegranate pistils were collected from 12-year-old ‘Tunisiruanzi’ (also named ‘Tunisia’) trees grown in nursery of the Zhengzhou Fruit Research Institute located in Zhengzhou, Henan, China, and managed using conventional methods. Solitary flowers located in perennial branches, which contained high ratio of BFs, were selected as the sampling location of BFs’ pistils. Lateral flowers located in annual branches, which were observed with high ratio of FMFs, were selected for FMFs’ pistils. On the other hand, our previous studies showed that the putative cause of pomegranate female sterility was ovule development aborting after the formation of the inner integument primordium . The key stage for the termination of FMF ovule development was during the bud vertical diameter (BVD) was 5.0–13.0 mm. Pistils of FMFs at the pre-stage of FMFs’ ovules aborted (BVD 3.0–5.0 mm), the key stage of FMFs’ ovules aborted (BVD 5.0–13.0 mm), the stage after FMFs’ ovules aborted (BVD 5.0–13.0 mm) were collected for related miRNAs mining, pistils of BFs at the corresponding periods were selected as controls. In order to denote the accessions clearly, we used TNSI, TNSII, and TNSIII represent the BFs’ (Bisexual flowers) pistils when their BVD was 3.0–5.0, 5.1–13.0, 13.1–25.0 mm, respectively. Similarly, the designations ATNSI, ATNSII, and ATNSIII were used to represent the FMFs’ (Functional male flowers) pistils when their BVD was 3.0–5.0, 5.1–13.0, 13.1–25.0 mm, respectively , each stage with three repetitions.
DOI: 10.6084/m9.figshare.9559817
title: SA#3 Datasets

description: Datasets used to generated figures in the manuscript "Self-acceleration and Instability of Gravity Wave Packets: 3. Three-Dimensional Packet Propagation, Secondary Gravity waves, Momentum Transport, and Transient Mean Forcing in Tidal Winds"
DOI: 10.6084/m9.figshare.9555842
title: Assessing the causes of diversification slowdowns: temperature-dependent and diversity-dependent models receive equivalent support

description: The zip file contains 218 time-calibrated trees of tetrapod families. There are amphibians, birds, crocodiles, mammals, squamates, and turtles. The files are Rdata files one can read and use in R as follows: attach("FamilyAmphibiaTrees.Rdata"). The phylogenies are stored in a list containing the family name, the dated tree, and the total number of species in the family. To get the tree, one can do as follows: phylo
DOI: 10.6084/m9.figshare.9555518
title: JUMP SIGMA INDEX.xlsx

description: Spreadsheet (supplemental online material) which allows direct access to the calculation of Sigma Index and the general classification into different sports modalities. PLEASE, DOWNLOAD THE ARCHIVE TO USE THIS SPREADSHEET IN THE EXCEL.
DOI: 10.6084/m9.figshare.9555518.v1
title: JUMP SIGMA INDEX.xlsx

description: Spreadsheet (supplemental online material) which allows direct access to the calculation of Sigma Index and the general classification into different sports modalities. PLEASE, DOWNLOAD THE ARCHIVE TO USE THIS SPREADSHEET IN THE EXCEL.
DOI: 10.6084/m9.figshare.9555554
title: Supplemental Tables Severance et al

description: <br>Severance AL, Midic U, Latham KE. 2019. Genotypic divergence in mnosue oocyte transcriptomes: Possible pathways to hybrid vigor impacting fertility and embryogenesis. Physiol Genomics.<br>Study comparing transcriptomes of C57BL/6, DBA/2 and BDF1 genotypes at GV and MII stages
DOI: 10.6084/m9.figshare.9555554.v1
title: Supplemental Tables Severance et al

description: <br>Severance AL, Midic U, Latham KE. 2019. Genotypic divergence in mnosue oocyte transcriptomes: Possible pathways to hybrid vigor impacting fertility and embryogenesis. Physiol Genomics.<br>Study comparing transcriptomes of C57BL/6, DBA/2 and BDF1 genotypes at GV and MII stages
DOI: 10.6084/m9.figshare.9552950
title: Reliability of the Balance Evaluation Systems Test and Trunk Control Measurement Scale in Adult Spinal Deformity - Datafiles

description: These datasets contain patient data of 10 Adult Spinal Deformity patients, tested on the Balance Evaluation Systems Test and Trunk Control Measurement Scale. The data was used and published to investigate the reliability between sessions and raters of both balance assessment scales.
DOI: 10.6084/m9.figshare.9552950.v1
title: Reliability of the Balance Evaluation Systems Test and Trunk Control Measurement Scale in Adult Spinal Deformity - Datafiles

description: These datasets contain patient data of 10 Adult Spinal Deformity patients, tested on the Balance Evaluation Systems Test and Trunk Control Measurement Scale. The data was used and published to investigate the reliability between sessions and raters of both balance assessment scales.
DOI: 10.6084/m9.figshare.9555008.v1
title: A spatially-explicit database of wind disturbances in European forests over the period 2000-2018

description: We present a database of wind disturbances in European forests (FORWIND). The data set corresponds the data presented in the paper “A spatially-explicit database of wind disturbances in European forests over the period 2000-2018” which has been submitted to Earth System Science Data (https://www.earth-system-science-data.net/).FORWIND comprises more than 80,000 spatially delineated areas in Europe that were disturbed by wind in the period 2000-2018, and describes them in a harmonized and consistent geographical vector format. The FORWIND dataset contains records as polygon features in shapefile format (.shp). The geometry of a feature is stored as a shape comprising a set of vector coordinates corresponding to the boundaries of the area of a given wind disturbance. Records are georeferenced in geographical coordinates, i.e. latitude and longitude, following the WGS84 standard (EPSG:4326). Basic attributes of each disturbance are provided in an associated table, stored in a .dbf file and include: * identifier code (Id_poly)* date of event (EventDate) * storm name (StormName)* type of event (EventType) * country (Country)* area affected [in hectares] (Area)* perimeter [in meters] (Perimeter) * damage degree [in %] (Damage_deg)* acquisition method (Methods)* data provider (Dataprovid)* source (Source) Missing data are reported as -999.<br> Correspondence to: Giovanni Forzieri (giovanni.forzieri@ec.europa.eu)<br>
DOI: 10.6084/m9.figshare.9549974
title: Phylogenetic data matrix (nexus format) from New information on the Cretaceous sauropod dinosaurs of Zhejiang Province, China: impact on Laurasian titanosauriform phylogeny and biogeography

description: Titanosaurs were a globally distributed clade of Cretaceous sauropods. Historically regarded as a primarily Gondwanan radiation, there is a growing number of Eurasian taxa, with several putative titanosaurs contemporaneous with, or even predating, the oldest known Southern Hemisphere remains. The early Late Cretaceous Jinhua Formation, in Zhejiang Province, China, has yielded two putative titanosaurs, <i>Jiangshanosaurus lixianensis</i> and <i>Dongyangosaurus sinensis</i>. Here, we provide a detailed re-description and diagnosis of <i>Jiangshanosaurus</i>, as well as new anatomical information on <i>Dongyangosaurus</i>. Previously, a ‘derived’ titanosaurian placement for <i>Jiangshanosaurus</i> was primarily based on the presence of procoelous anterior caudal centra. We show that this taxon had amphicoelous anterior-middle caudal centra. Its only titanosaurian synapomorphy is that the dorsal margins of the scapula and coracoid are approximately level with one another. <i>Dongyangosaurus</i> can clearly be differentiated from <i>Jiangshanosaurus</i>, and displays features that indicate a closer relationship to the titanosaur radiation. Revised scores for both taxa are incorporated into an expanded phylogenetic data matrix, comprising 124 taxa scored for 548 characters. Under equal weights parsimony, <i>Jiangshanosaurus</i> is recovered as a member of the non-titanosaurian East Asian somphospondylan clade Euhelopodidae, and <i>Dongyangosaurus</i> lies just outside of Titanosauria. However, when extended implied weighting is applied, both taxa are placed within Titanosauria. Most other ‘Middle’ Cretaceous East Asian sauropods are probably non-titanosaurian somphospondylans, but at least <i>Xianshanosaurus</i> appears to belong to the titanosaur radiation. Our analyses also recover the Early Cretaceous European sauropod <i>Normanniasaurus genceyi</i> as a ‘derived’ titanosaur, clustering with Gondwanan taxa. These results provide further support for a widespread diversification of titanosaurs by at least the Early Cretaceous.
DOI: 10.6084/m9.figshare.9549971
title: Phylogenetic data matrix (TNT format) from New information on the Cretaceous sauropod dinosaurs of Zhejiang Province, China: impact on Laurasian titanosauriform phylogeny and biogeography

description: Titanosaurs were a globally distributed clade of Cretaceous sauropods. Historically regarded as a primarily Gondwanan radiation, there is a growing number of Eurasian taxa, with several putative titanosaurs contemporaneous with, or even predating, the oldest known Southern Hemisphere remains. The early Late Cretaceous Jinhua Formation, in Zhejiang Province, China, has yielded two putative titanosaurs, <i>Jiangshanosaurus lixianensis</i> and <i>Dongyangosaurus sinensis</i>. Here, we provide a detailed re-description and diagnosis of <i>Jiangshanosaurus</i>, as well as new anatomical information on <i>Dongyangosaurus</i>. Previously, a ‘derived’ titanosaurian placement for <i>Jiangshanosaurus</i> was primarily based on the presence of procoelous anterior caudal centra. We show that this taxon had amphicoelous anterior-middle caudal centra. Its only titanosaurian synapomorphy is that the dorsal margins of the scapula and coracoid are approximately level with one another. <i>Dongyangosaurus</i> can clearly be differentiated from <i>Jiangshanosaurus</i>, and displays features that indicate a closer relationship to the titanosaur radiation. Revised scores for both taxa are incorporated into an expanded phylogenetic data matrix, comprising 124 taxa scored for 548 characters. Under equal weights parsimony, <i>Jiangshanosaurus</i> is recovered as a member of the non-titanosaurian East Asian somphospondylan clade Euhelopodidae, and <i>Dongyangosaurus</i> lies just outside of Titanosauria. However, when extended implied weighting is applied, both taxa are placed within Titanosauria. Most other ‘Middle’ Cretaceous East Asian sauropods are probably non-titanosaurian somphospondylans, but at least <i>Xianshanosaurus</i> appears to belong to the titanosaur radiation. Our analyses also recover the Early Cretaceous European sauropod <i>Normanniasaurus genceyi</i> as a ‘derived’ titanosaur, clustering with Gondwanan taxa. These results provide further support for a widespread diversification of titanosaurs by at least the Early Cretaceous.
DOI: 10.6084/m9.figshare.9549974.v1
title: Phylogenetic data matrix (nexus format) from New information on the Cretaceous sauropod dinosaurs of Zhejiang Province, China: impact on Laurasian titanosauriform phylogeny and biogeography

description: Titanosaurs were a globally distributed clade of Cretaceous sauropods. Historically regarded as a primarily Gondwanan radiation, there is a growing number of Eurasian taxa, with several putative titanosaurs contemporaneous with, or even predating, the oldest known Southern Hemisphere remains. The early Late Cretaceous Jinhua Formation, in Zhejiang Province, China, has yielded two putative titanosaurs, <i>Jiangshanosaurus lixianensis</i> and <i>Dongyangosaurus sinensis</i>. Here, we provide a detailed re-description and diagnosis of <i>Jiangshanosaurus</i>, as well as new anatomical information on <i>Dongyangosaurus</i>. Previously, a ‘derived’ titanosaurian placement for <i>Jiangshanosaurus</i> was primarily based on the presence of procoelous anterior caudal centra. We show that this taxon had amphicoelous anterior-middle caudal centra. Its only titanosaurian synapomorphy is that the dorsal margins of the scapula and coracoid are approximately level with one another. <i>Dongyangosaurus</i> can clearly be differentiated from <i>Jiangshanosaurus</i>, and displays features that indicate a closer relationship to the titanosaur radiation. Revised scores for both taxa are incorporated into an expanded phylogenetic data matrix, comprising 124 taxa scored for 548 characters. Under equal weights parsimony, <i>Jiangshanosaurus</i> is recovered as a member of the non-titanosaurian East Asian somphospondylan clade Euhelopodidae, and <i>Dongyangosaurus</i> lies just outside of Titanosauria. However, when extended implied weighting is applied, both taxa are placed within Titanosauria. Most other ‘Middle’ Cretaceous East Asian sauropods are probably non-titanosaurian somphospondylans, but at least <i>Xianshanosaurus</i> appears to belong to the titanosaur radiation. Our analyses also recover the Early Cretaceous European sauropod <i>Normanniasaurus genceyi</i> as a ‘derived’ titanosaur, clustering with Gondwanan taxa. These results provide further support for a widespread diversification of titanosaurs by at least the Early Cretaceous.
DOI: 10.6084/m9.figshare.9549584
title: Crb-blast annotation of flat periwinkles pseudoreference transcriptome

description: File containing a detailed annotation of the flat periwinkles pseudoreference transcriptome based on the Swiss-prot database and L. saxatilis transcriptome
DOI: 10.6084/m9.figshare.9549971.v1
title: Phylogenetic data matrix (TNT format) from New information on the Cretaceous sauropod dinosaurs of Zhejiang Province, China: impact on Laurasian titanosauriform phylogeny and biogeography

description: Titanosaurs were a globally distributed clade of Cretaceous sauropods. Historically regarded as a primarily Gondwanan radiation, there is a growing number of Eurasian taxa, with several putative titanosaurs contemporaneous with, or even predating, the oldest known Southern Hemisphere remains. The early Late Cretaceous Jinhua Formation, in Zhejiang Province, China, has yielded two putative titanosaurs, <i>Jiangshanosaurus lixianensis</i> and <i>Dongyangosaurus sinensis</i>. Here, we provide a detailed re-description and diagnosis of <i>Jiangshanosaurus</i>, as well as new anatomical information on <i>Dongyangosaurus</i>. Previously, a ‘derived’ titanosaurian placement for <i>Jiangshanosaurus</i> was primarily based on the presence of procoelous anterior caudal centra. We show that this taxon had amphicoelous anterior-middle caudal centra. Its only titanosaurian synapomorphy is that the dorsal margins of the scapula and coracoid are approximately level with one another. <i>Dongyangosaurus</i> can clearly be differentiated from <i>Jiangshanosaurus</i>, and displays features that indicate a closer relationship to the titanosaur radiation. Revised scores for both taxa are incorporated into an expanded phylogenetic data matrix, comprising 124 taxa scored for 548 characters. Under equal weights parsimony, <i>Jiangshanosaurus</i> is recovered as a member of the non-titanosaurian East Asian somphospondylan clade Euhelopodidae, and <i>Dongyangosaurus</i> lies just outside of Titanosauria. However, when extended implied weighting is applied, both taxa are placed within Titanosauria. Most other ‘Middle’ Cretaceous East Asian sauropods are probably non-titanosaurian somphospondylans, but at least <i>Xianshanosaurus</i> appears to belong to the titanosaur radiation. Our analyses also recover the Early Cretaceous European sauropod <i>Normanniasaurus genceyi</i> as a ‘derived’ titanosaur, clustering with Gondwanan taxa. These results provide further support for a widespread diversification of titanosaurs by at least the Early Cretaceous.
DOI: 10.6084/m9.figshare.9549071
title: Data from: Competition and cooperation among chimney swifts at roost entry

description: 3D flight trajectories of chimney swifts flying by and landing in a chimney, recorded in Raleigh North Carolina on 2014-09-20. This dataset was used as the basis for the analyses and figures described in Competition and cooperation among chimney swifts at roost entry https://doi.org/10.1088/1748-3190/ab3776<br>The data are packed in a single MATLAB file, see the associated readme.txt file for a description of the different variables.<br>
DOI: 10.6084/m9.figshare.9549071.v1
title: Data from: Competition and cooperation among chimney swifts at roost entry

description: 3D flight trajectories of chimney swifts flying by and landing in a chimney, recorded in Raleigh North Carolina on 2014-09-20. This dataset was used as the basis for the analyses and figures described in Competition and cooperation among chimney swifts at roost entry https://doi.org/10.1088/1748-3190/ab3776<br>The data are packed in a single MATLAB file, see the associated readme.txt file for a description of the different variables.<br>
DOI: 10.6084/m9.figshare.9549584.v3
title: Crb-blast annotation of flat periwinkles pseudoreference transcriptome

description: File containing a detailed annotation of the flat periwinkles pseudoreference transcriptome based on the Swiss-prot database and L. saxatilis transcriptome
DOI: 10.6084/m9.figshare.9549584.v2
title: Crb-blast annotation of flat periwinkles pseudoreference transcriptome

description: File containing a detailed annotation of the flat periwinkles pseudoreference transcriptome based on the Swiss-prot database and L. saxatilis transcriptome
DOI: 10.6084/m9.figshare.9548102
title: Mechanisms of Disease map example

description: This is an example of a mechanism of disease map that was produced by a team of students.
DOI: 10.6084/m9.figshare.9548009
title: SA#2 Datasets

description: Datasets used to generated figures in the manuscript "Self-acceleration and Instability of Gravity Wave Packets: 2. Two-Dimensional Packet Propagation, Instability Dynamics, and Transient Flow Responses"
DOI: 10.6084/m9.figshare.9547796
title: The impact of Hurricane Michael on longleaf pine habitats in Florida

description: This dataset accompanies the manuscript entitled "The impact of Hurricane Michael on longleaf pine habitats in Florida". These data include 4 sites in Florida with 2-5 plots per site. Within each plot 8 cells were laid out where data on the 5 closest trees were recorded including dbh, height, crown class, status (living or dead) and a damage classification. Surveys were conducted pre-Hurricane Michael and post-Hurricane Michael.
DOI: 10.6084/m9.figshare.9548102.v1
title: Mechanisms of Disease map example

description: This is an example of a mechanism of disease map that was produced by a team of students.
DOI: 10.6084/m9.figshare.9547796.v1
title: The impact of Hurricane Michael on longleaf pine habitats in Florida

description: This dataset accompanies the manuscript entitled "The impact of Hurricane Michael on longleaf pine habitats in Florida". These data include 4 sites in Florida with 2-5 plots per site. Within each plot 8 cells were laid out where data on the 5 closest trees were recorded including dbh, height, crown class, status (living or dead) and a damage classification. Surveys were conducted pre-Hurricane Michael and post-Hurricane Michael.
DOI: 10.6084/m9.figshare.9548009.v2
title: SA#2 Datasets

description: Datasets used to generated figures in the manuscript "Self-acceleration and Instability of Gravity Wave Packets: 2. Two-Dimensional Packet Propagation, Instability Dynamics, and Transient Flow Responses"
DOI: 10.6084/m9.figshare.9547475
title: Libro Maestro

description: Hoja de Excel para compilar y organizar referencias bibliográficas con menciones a productos de investigación. Material de apoyo para elaborar informes de citación, elaborado por Enrique Rodríguez-Trujano
DOI: 10.6084/m9.figshare.9548009.v1
title: SA#2 Datasets

description: Datasets used to generated figures in the manuscript "Self-acceleration and Instability of Gravity Wave Packets: 2. Two-Dimensional Packet Propagation, Instability Dynamics, and Transient Flow Responses"