cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27957855.v4
title: Laboratory Panel for Intestinal Tuberculosis in Indonesia

description: World Health Organization (WHO) reported through the Global Tuberculosis Report 2022 that Indonesia is in 2nd place with the highest burden of tuberculosis (TB) in 2021. Intestinal tuberculosis (ITB) as part of TB has a prevalence of around 3–16%. The clinical manifestations, radiological features, and histopathology of ITB resemble other gastrointestinal diseases, such as Crohn's disease and colon cancer, making it a challenge in efforts to develop a noninvasive laboratory panel for diagnosing ITB with various laboratory biomarkers. We present data related to laboratory findings and clinical manifestation for ITB diagnosis
DOI: 10.6084/m9.figshare.5559094.v1
title: Supplementary Material for: Impact of Stressful Life Events on Patients with Chronic Obstructive Pulmonary Disease

description: <b><i>Background:</i></b> There is a general notion that stressful life events may cause mental and physical health problems. <b><i>Objectives:</i></b> We aimed to describe stressful life events reported by patients with chronic obstructive pulmonary disease (COPD) and to assess their impact on health outcomes and behaviors. <b><i>Methods:</i></b> Two hundred and sixty-six primary care patients who participated in the ICE COLD ERIC cohort study were asked to document any stressful life events in the past 3 years. We assessed the before-after (the event) changes for symptoms of depression and anxiety, health status, dyspnea-related quality of life, exacerbations, cigarette use, and physical activity. We used linear regression analysis to estimate the crude and adjusted magnitude of the before-after changes. <b><i>Results:</i></b> About 41% (110/266) of patients reported the experience of any stressful life events and “death of relatives/important persons” was most common (31%). After accounting for age, sex, living status, lung function, and anxiety/depression status at baseline, experiencing any stressful life events was associated with a 0.9-point increase on the depression scale (95% CI 0.3 to 1.4), a 0.8-point increase on the anxiety scale (95% CI 0.3 to 1.3), and a 0.8-point decrease in the physical activity score (95% CI –1.6 to 0). <b><i>Conclusions:</i></b> Experiencing stressful life events was associated with a small to moderate increase in symptoms of depression and anxiety in COPD, but no discernable effect was found for other physical outcomes. However, confirmation of these results in other COPD cohorts and identification of patients particularly vulnerable to stressful life events are needed.
DOI: 10.17632/xrc7k83tjv
title: Venkatachalapathy et al - p53 phase resetting

description: Imaging data, gene expression data, computational modeling code, and data analysis code associated with the manuscript "Pulsed stimuli enable p53 phase resetting to synchronize single cells and modulate cell-fate determination" by H Venkatachalapathy et al.
DOI: 10.17632/79b5kp6dht
title: Pure spin-angular momentum coefficients for non-scalar one-particle operators in jj-coupling

description: Abstract A revised program for generating the spin-angular coefficients in relativistic atomic structure calculations is presented. When compared with our previous version [G. Gaigalas, S. Fritzsche and I.P. Grant, Comput. Phys. Comm. 139 (2001) 263], the new version of the Anco program now provides these coefficients for both, scalar as well as non-scalar one-particle operators as they arise frequently in the study of transition probabilities, photoionization and electron capture processes, the align... Title of program: ANCO(2) Catalogue Id: ADOO_v2_0 [ADQO] Nature of problem The matrix elements of a one-electron tensor operator A^k of (any) rank k with respect to a set of configuration state functions (CSF) |gammaiJiPi&gt; can be written as Sigmaij(tij^k(ab)(a|A^k|b)) where the spin-angular coefficients tij^k(ab) are independent of the operator A^k; i, j are CSF labels and a, b specify the interacting orbitals. A combination of second-quantization and quasispin methods has been utilized in order to derive and to obtain these angular coefficients for one-electro ... Versions of this program held in the CPC repository in Mendeley Data ADOO_v1_0; ANCO; 10.1016/S0010-4655(01)00213-2 ADOO_v2_0; ANCO(2); 10.1016/S0010-4655(02)00589-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/cb887gkmxw
title: SoC Estimation on Li-ion Batteries: A New EIS-based Dataset for data-driven applications

description: On 11 brand new cylindrical rechargeable Lithium Iron Phosphate batteries, Electrochemical Impedance Spectroscopy (EIS) were measured at SoC 100%, 95%, 90%, 85%, 80%, 75%, 70%, 65%, 60%, 55%, 50%, 45%, 35%, 30%, 25%, 20%, 15%, 10%, 5%. All of these measures for each battery are repeated for two discharge cycles. 

Impedance frequencies[ 0.01, 0.02, 0.03, 0.05, 0.08, 0.1, 0.2, 0.3, 0.5, 0.8, 1, 2, 3, 5, 8, 10, 11, 21, 31, 61, 81, 100, 110, 210, 310, 510, 810, 1000 ] Hz used for the all EIS spectrum.

The files are organized in directories. There are eleven directories one for each battery, from “ B01” to “ B11”. Each of these directories further contains two directories, “ EIS Measurement” and “Capacity Measurement”. In the first one there are all the test directories, inside each test folder there are the corresponding test comma-separated values (csv) files with all the impedance spectroscopy measurements. In the second folder, on the same level as “ EIS Measurement” there is the battery capacity test also in a csv formatted file.
DOI: 10.17632/n5dbj6626g
title: XRD Ti-Ni low and high energy mechanically alloyed

description: Low and high energy mechanically alloyed Ti-Ni powder was studied utilising X-ray diffraction.
DOI: 10.21233/74f7-rk02
title: East Ujimqin Banner ostracode surface sample dataset

description: Raw data for the East Ujimqin Banner ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.23937057.v1
title: DART-FISH (Kalhor, Chen et al) human kidney cortex

description: This data set is associated with Kalhor, Chen et al (https://doi.org/10.1101/2023.08.16.553610). This repo contains the DART-FISH data on human kidney presented in the paper. File descriptionkidney_cell_metadata.tsv: a data table containing the cell IDs, locations (xg and yg columns) and annotations (class and subclass columns)spots_table.tsv: a data table containing the information for all decoded spots, including location (xg and yg columns), gene, and the ID of the cell they were assigned to (cell_label column)brightfield.tif, DRAQ5.tif, RiboSoma_N9.tif: brightfield, nuclear stain, and RiboSoma stain for the entire imaged area, respectivelysegmentation_mask_custom.npy: Cell segmentation mask generated by a fine-tuned cellpose model<br>
DOI: 10.6084/m9.figshare.25183823.v1
title: Plots & Reference data for: Bonelli’s Eagle electrocution risk in Israel can be reduced by 80% by insulating only 4% of the pylonsOrnithological Applications2024

description: RT Journal ArticleA1 Mayrose, AsafA1 Haviv, EliA1 Hatzofe, OhadA1 Troupin, DavidA1 Elroy, MichalA1 Sapir, NirT1 Bonelli’s Eagle electrocution risk in Israel can be reduced by 80% by insulating only 4% of the pylonsJF Ornithological ApplicationsJO Ornithological ApplicationsYR 2024DO 10.1093/ornithapp/duae004OP duae004SN 0010-5422AB The Bonelli’s Eagle (Aquila fasciata) is a critically endangered species in Israel, with electrocution on power lines posing a serious threat to its population. Because retrofitting of electricity pylons to prevent mortality is a slow and costly process, it is important to prioritize the pylons in the network for quick and efficient mitigation of eagle mortality. To determine which pylons need to be retrofitted, we applied a three-stage maximum entropy modeling process for identifying the risk factors posed by different environmental variables. The environmental feature with the highest correlation to electrocution is the distance to reservoirs (i.e., many electrocution events occur near water reservoirs). The reservoirs are foraging hotspots for Bonelli’s Eagles in Israel’s arid environment. Electricity pylons powering the reservoirs’ pumping facilities tend to be the highest perches in the vicinity of many of the reservoirs, creating an ecological trap. The strong attraction of reservoirs to eagles may explain the high level of selectivity indicated by the model, suggesting that retrofitting only 3.6% of the pylons in the network would achieve 77% reduction in eagles’ electrocution probability. Moreover, insulating pylons according to the model will also likely reduce electrocutions of other avian species, including Eastern Imperial Eagle (Aquila heliaca) and White-tailed Eagle (Haliaeetus albicilla). The modeling process presented here yielded two electrocution risk maps, one to facilitate prioritization of mitigation in Israel’s existing power network and the second to support planning and designing new infrastructure. The model may help reach conservation goals for Bonelli’s Eagle and may also be useful in prioritizing pylon retrofitting in other arid landscapes.RD 2/8/2024UL https://doi.org/10.1093/ornithapp/duae004
DOI: 10.6084/m9.figshare.26340373.v1
title: <b>Predation on live and artificial insect prey shows different global latitudinal patterns</b>

description: Long-standing theory predicts that the intensity of biotic interactions increases from high to low latitudes. Studies addressing geographic variation in predation on insect prey have often relied on prey models, which lack many biological characteristics of live prey. Our goals were to explore global latitudinal patterns of predator attack rates on standardised live insect prey and to compare the patterns in predation on live insects with those on plasticine prey models. We measured predation rates in 43 forested locations distributed across five continents from 34.1°S to 69.5°N latitude. At each location, we exposed 20 sets of three bait types, one set per tree. Each set included three live fly larvae (maggots), three live fly puparia, and three plasticine models of the puparia. We used glue rings to isolate half of the sets from non-flying predators. Arthropod attack rates on plasticine prey decreased linearly from low to high latitudes, whereas attack rates on maggots had a U shaped distribution, with the lowest predation rates at temperate latitudes and the highest rates at tropical and boreal latitudes. This difference emerged from intensive predator attacks on live maggots, but not on plasticine models, in boreal sites. Site-specific attack rates of arthropod predators on live and plasticine prey were not correlated. In contrast, bird attack rates on live maggots and plasticine models were positively correlated, but did not show significant latitudinal changes. We concluded that latitudinal patterns in predation differ between major groups of predators and between types of prey. Poleward decreases in both arthropod and combined arthropod and bird predation on plasticine models do not mirror patterns of predation on our live prey, the latter likely reflecting real patterns of predation risk better than do patterns of attack on artificial prey.
DOI: 10.6084/m9.figshare.28473194.v1
title: ChachaguaData.xlsx

description: Dragonflies visually sampled at eight streams near La Fortuna, Costa Rica, from Jan-Mar 2023
DOI: 10.17632/xncfcdsyj7
title: (Data alongside) Fault prediction of gas-insulated system with hypersensitive optical monitoring and spectral information

description: Fig. 1. Phase-resolved scatterplots (φ, q), double-spectral scatterplots (Iband1, Iband2) for corona discharges occurring along the needle-plane gaps with different gap distances (d). (a)-(c): (φ, q); (d)-(f): (Iband1, Iband2); Fig. 2. Integral spectra of the corona discharge in SF6 (gap distance = 50 mm; gas pressure = 0.3 MPa; f = 15). A fiber-optic spectrometer (200-1150 nm), a collecting lens installed outside the quartz glass window of the test chamber, and a 19-core silica fiber were employed to measure the integral spectra of the discharges. Fig. 7. Light intensity stochastic distributions in an RGB 3-D coordinate system for the three types of defect. Fig. 11. Scatterplots of the DBSCAN clustering results for a double-sourced discharge (floating discharge and creeping discharge occur simultaneously with a discharge level of 320 pC). Fig. 15. Results of clustering analysis on TSS data (Cluster 1 and Cluster 2) and the evolution paths of the two types of discharge (Corona discharge: 30 μJ→93 μJ; Floating discharge: 77 μJ→224 μJ).
DOI: 10.6084/m9.figshare.27612402.v1
title: sp20.OrthoFinder.txt

description: The 'sp20.OrthoFinder.txt.gz' file, generated by the OrthoFinder software, recorded 22,536 gene families. This file was the input for CAFE in gene family analysis.
DOI: 10.6084/m9.figshare.1551442.v1
title: Lab 1, Gender and Eye Color

description: The lab was conducted on Tuesday, September 15, 2015 at two thirty in Lumbers building room 117. The data set includes the variables, gender and eye colour. The eye color data was collected from the first fifteen individuals present inside the ecology lab by looking and asking their eye color. The gender included eight males and seven females. Group members included Rachel, Maleeha and Aster.
DOI: 10.6084/m9.figshare.20319060.v1
title: TD-DFT

description: Green MR-TADF molecules <br>
DOI: 10.6084/m9.figshare.20822032.v1
title: data set menopause.xlsx

description: DATA
DOI: 10.6084/m9.figshare.28491191.v1
title: Supplementary Material for: Outcomes Post-laparoscopic Intervention for Accessory and Cavitated Uterine Masses: A Review and a Molecular Insight

description: Background: Accessory and cavitated uterine masses (ACUM) are rare Mullerian anomalies, defined as an isolated accessory cavitated mass lined with endometrial epithelium. 

Objectives: This article explores ACUM lesions from two aspects and integrates a case report of a successful laparoscopic-assisted intervention for ACUM in a 24-year-old woman with refractory dysmenorrhea with a review of current literature on laparoscopic surgical techniques. Unique to this case was the process of undergoing targeted genetic sequencing via the Find ITTM Panel Version 3.4 on the ACUM, looking for mutations in KRAS, PIK3CA, and FGFR2. A process that was inspired by recent reports that indicate that even normal endometrium can harbor cancer-associated mutations. 

Methods: A comprehensive search of Ovid MEDLINE and Embase was performed. Studies were selected if they explored laparoscopic surgery's impact on ACUM patients' outcomes related to fertility, menorrhagia, or dysmenorrhea. Risk of bias assessment was performed using the JBI Critical Appraisal Checklist.

Outcome: From 160 articles identified, 25 full-text articles were analyzed with a total of 75 unique patients discussed. Dysmenorrhea was present in 100% of cases (n=75/75), and laparoscopic resection improved patient symptoms in 84% (n=63/75) of cases. The mass excised in the case was positive for somatic missense mutations in RET (R813W) and HRAS (G12S) genes, identified at low variant allele frequencies.

Conclusions and Outlook: These results demonstrated that laparoscopic surgical approaches are effective and frequently the first surgical approach chosen for the treatment of ACUM, but that techniques to treat these conditions are not standardized. This case is the first to demonstrate mutations in ACUM, suggesting a potential role for cancer-associated somatic mutations in their genesis. Future developments in this area may include sending more of these samples for genetic analysis, improving our understanding of how these lesions are formed, while also working to standardize how they are removed.
DOI: 10.17632/nrcg43224r
title: Relationship of Auditory Electrophysiological Responses to Magnetic Resonance Spectroscopy Metabolites in Early Phase Psychosis

description: This project aimed to examine the relationship between the concentrations of various neural metabolites (labeled Cre, mI, NAA, GPCPCH, and GluGln in the attached dataset) measured via magnetic resonance spectroscopy (MRS) and two event related potentials, including amplitude of the mismatch negativity (MMN; labeled FZMMNvoltage in the attached dataset) and power of the auditory steady state response (ASSR; labeled FZ40Hzpower in the attached dataset) to 40 Hz click stimuli in individuals with early phase psychosis (EPP). Group differences in metabolite concentrations, MMN amplitude, and 40 Hz ASSR power were also compared relative to healthy control participants. Demographic (age, sex), cognitive (from the Brief Assessment of Cognition in Schizophrenia, BACS composite), and symptom data (from the Positive and Negative Syndrome Scale, PANSS) is also available. Key findings included elevated concentration of several metabolites in individuals with EPP (i.e., Glx, Cre, Cho) relative to controls, and no difference in MMN amplitude or 40 Hz ASSR power. In individuals with EPP, increased metabolite levels were associated with smaller MMN amplitude. A weaker association between increased metabolite levels and 40 Hz ASSR power was found. Neither the MRS metabolites nor electrophysiological measures were correlated with symptom severity, age, cognitive function, or medication dosage.
DOI: 10.6084/m9.figshare.6008072.v1
title: Building a sustainable development index and spacial assessment of municipalities inequalities in the state of Ceará

description: Abstract The paper builds a sustainable development index based on environmental, social, economic and institutional dimensions and presents a spatial assessment of municipalitties inequalities in the State of Ceará. Sustainability indices force institutions and governments to question their standards and act as “driving forces” for public policy-making. The validity of sustainability indexes is heavily dependent on how their components are weighted and aggregated. The research is quantitative developed through secondary data acquired in public agency databases of the country (Brazil) and federal unit (State of Ceara). Data analysis included confirmatory factor analysis for the construction of general sustainability indexes, descriptive analysis of these indices and spatial econometric modeling to represent on the map of Ceará municipalities. The survey results reveal a regular adjustment of the sustainable development index. The model allows a geographical view of sustainable development indicators and presents with a tool in the definition of public policies for social equity, environmental and economic. The analysis of social, economic, environmental, institutional and general indices revealed that the most urban areas of the State of Ceará have a greater sustainable development and confirms the fragility of public policies in promoting regional balance.
DOI: 10.17632/3wtb2zkk9z
title: Mendeley Supplemental Table 1. Frequency of subclinical spread by anatomic site*

description: Mendeley Supplemental Table 1. Frequency of subclinical spread by anatomic site*
DOI: 10.17632/64tf9v78n3
title: Theoretical Investigation of Benzodithiophene-Based Donor Molecules in Organic Solar Cells: From Structural Optimization to Performance Metrics

description: This dataset contains results from various computational calculations including geometry optimization, density of states (DOS) analysis, natural transition orbitals (NTO), transition density matrix (TDM) calculations, and total energy computations. These data were generated using Density Functional Theory (DFT) and Time-dependent Density Functional Theory (TD-DFT) methods, specifically utilizing Gaussian09 software.
DOI: 10.17632/9798d4dgrx
title: (-)-Amarbellisine is none other than (-)-montanine: A CASE-3D and dereplication NMR study

description: MMFF94s conformational ensembles. DFT chemical shielding computations and StereoFitter JSON output files.
DOI: 10.17632/s2f3xvgnrr
title: 5G deployment dataset

description: Input dataset of the paper - 5G network deployment and the associated energy consumption in the UK: A complex systems’ exploration, including
- postcode
- area
- number of mobile users
- mobile user density
- number of base stations
- base station density
DOI: 10.5522/04/28381610.v1
title: NCSE v2.0: A Dataset of OCR-Processed 19th Century English Newspapers

description: NCSE v2.0 Dataset RepositoryThis repository contains the NCSE v2.0 dataset and associated supporting data used in the paper "Reading the unreadable: Creating a dataset of 19th century English newspapers using image-to-text language models".Dataset OverviewThe NCSE v2.0 is a digitized collection of six 19th-century English periodicals containing:82,690 pages1.4 million entries321 million words1.9 billion charactersThe dataset includes:1.1 million text entries198,000 titles17,000 figure descriptions16,000 tablesRepository Contents<b>NCSE v2.0 Dataset</b>NCSE_v2.zip: a folder containing a parquet file for each of the periodicals as well as a readme file.<b>Bounding Box Dataset</b><br>A zip file called bounding_box.zip. Containspost_process: A folder of the processed periodical bounding box datapost_process_fill: A folder of the processed periodical bounding box data WITH column filling.bbox_readme.txt: a readme file and data description for the bounding boxes<b>Test Sets</b>cropped_images.zip: 378 images cropped from the NCSE test set pages, all 2-bit png filesground_truth: 358 text files corresponding to the text from the cropped_images folder<b>Classification Training Data</b><br>The below files are used for training the classification models. They contain 12000 observations 2000 from each periodical. The labels were classified using mistral-large-2411. This data is used to train the ModernBERT classifier described in the paper. The topics are taken from the International Press Telecommunications Council (IPTC) subject codes.silver_IPTC_class.parquet: IPTC topic classification silver setsilver_text_type.parquet: Text-type classification silver set<b>Classified Data</b><br>The zip file "classification_data.zip" with all rows classified using the ModernBERT classifer described in the paper.IPTC_type_classified.zip: contains one parquet file per periodicaltext_type_classified.zip: contains one parquet file per periodicalclassification_readme.md: Description of the data<b>Classification Mappings</b><br>Data for mapping the classification codes to human readable names.class_mappings.zip: contains a json for each classification typeIPTC_class_mapping.jsontext_type_class_mapping.jsonOriginal ImagesThe original page images can be found at the King's College London Repositories:Monthly RepositoryNorthern StarLeaderEnglish Woman's JournalTomahawkPublishers' CircularOr via the project central archiveCitationIf you use this dataset, please cite:<pre><pre>No citation data currently available<br></pre></pre>Related CodeAll original code related to this project including the creation of the datasets and thier analysis can be found at:<br>https://github.com/JonnoB/ereading_the_unreadableContactFor questions about the dataset, please create an issue in this repository.Usage RightsIn keeping with the original NCSE dataset, all data is made available under a Creative Commons Attribution 4.0 International License (CC BY).
DOI: 10.6084/m9.figshare.26076484.v1
title: Brand hate and Gender Differences Dataset

description: Brand hate and Gender Differences Dataset
DOI: 10.17632/3b5zrh3gjp
title: Data for: Predictors of Occupational Differences in Tipping

description: Contains the means of ratings of 108 service occupations on several dimensions. The names and descriptions of the variables are provided in the accompanying text. The data may be used in any way you want as long as you credit me as the source of the data.