cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gh95g
title: CCDC 2278815: Experimental Crystal Structure Determination

description: Related Article: Weikang Wu, Thayalan Rajeshkumar, Dongjing Hong, Shan Zhu, Zeming Huang, Fuxiang Chai, Weigang Wang, Qingbing Yuan, Yun Wei, Zuowei Xie, Laurent Maron, Shaowu Wang|2024|Inorg.Chem.|63|18365|doi:10.1021/acs.inorgchem.4c02316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gh91b
title: CCDC 2278811: Experimental Crystal Structure Determination

description: Related Article: Weikang Wu, Thayalan Rajeshkumar, Dongjing Hong, Shan Zhu, Zeming Huang, Fuxiang Chai, Weigang Wang, Qingbing Yuan, Yun Wei, Zuowei Xie, Laurent Maron, Shaowu Wang|2024|Inorg.Chem.|63|18365|doi:10.1021/acs.inorgchem.4c02316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gh94f
title: CCDC 2278814: Experimental Crystal Structure Determination

description: Related Article: Weikang Wu, Thayalan Rajeshkumar, Dongjing Hong, Shan Zhu, Zeming Huang, Fuxiang Chai, Weigang Wang, Qingbing Yuan, Yun Wei, Zuowei Xie, Laurent Maron, Shaowu Wang|2024|Inorg.Chem.|63|18365|doi:10.1021/acs.inorgchem.4c02316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gh93d
title: CCDC 2278813: Experimental Crystal Structure Determination

description: Related Article: Weikang Wu, Thayalan Rajeshkumar, Dongjing Hong, Shan Zhu, Zeming Huang, Fuxiang Chai, Weigang Wang, Qingbing Yuan, Yun Wei, Zuowei Xie, Laurent Maron, Shaowu Wang|2024|Inorg.Chem.|63|18365|doi:10.1021/acs.inorgchem.4c02316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.dcptbh
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon festuciformis Rendle",
 "Continent is Africa"
 ]
}

 The dataset includes 100 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017426-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14024411
title: VeloCycle-estimated cell cycle phases of single cells from a genome-scale perturb-seq performed in K562

description: Continuous cell cycle phase position between 0 and 2π estimated by VeloCycle (Lederer et al., Nature Methods 2024) for single cells of the perturb-seq performed in the K562 CML cell line by Replogle et al., Cell 2022. 

Underlies the cell cycle imbalances inferred in Pulver & Forey et al., 2024.

Method manuscript exerpt:

"For analysis on the genome-wide perturb-seq dataset of K562 cells (Replogle et al., 2022), a transfer learning approach was applied. Condition-independent estimation of the periodic Fourier series components would be especially challenging on Perturb-seq knockdown conditions containing either (1) very few cells or (2) cells belonging to just one phase of the cell cycle. To infer accurate cell cycle phases for these cells, we first performed manifold-learning for 5,000 training steps to estimate the gene harmonic coefficients (ν0, ν1sin, ν1cos) on a larger set of non-targeting control (NT) K562 cells (75,328 cells), which are more evenly distributed throughout the various phases of the cell cycle. Next, we ran manifold-learning again for 5,000 training steps, but on the entire perturb-seq dataset of 1,971,608 cells and 4,127 gene knockdown conditions (with at least 75 cells per condition). This time, we conditioned VeloCycle on the gene harmonic coefficients learned in the first step. This allowed cells belonging to each stratified gene knockdown condition to be assigned to a position on the cell cycle manifold, while restricting those assignments such that they were based on gene expression patterns earned on a larger and more informative dataset (allowing for batch effect expression differences)."
DOI: 10.5281/zenodo.14024412
title: VeloCycle-estimated cell cycle phases of single cells from a genome-scale perturb-seq performed in K562

description: Continuous cell cycle phase position between 0 and 2π estimated by VeloCycle (Lederer et al., Nature Methods 2024) for single cells of the perturb-seq performed in the K562 CML cell line by Replogle et al., Cell 2022. 

Underlies the cell cycle imbalances inferred in Pulver & Forey et al., 2024.

Method manuscript exerpt:

"For analysis on the genome-wide perturb-seq dataset of K562 cells (Replogle et al., 2022), a transfer learning approach was applied. Condition-independent estimation of the periodic Fourier series components would be especially challenging on Perturb-seq knockdown conditions containing either (1) very few cells or (2) cells belonging to just one phase of the cell cycle. To infer accurate cell cycle phases for these cells, we first performed manifold-learning for 5,000 training steps to estimate the gene harmonic coefficients (ν0, ν1sin, ν1cos) on a larger set of non-targeting control (NT) K562 cells (75,328 cells), which are more evenly distributed throughout the various phases of the cell cycle. Next, we ran manifold-learning again for 5,000 training steps, but on the entire perturb-seq dataset of 1,971,608 cells and 4,127 gene knockdown conditions (with at least 75 cells per condition). This time, we conditioned VeloCycle on the gene harmonic coefficients learned in the first step. This allowed cells belonging to each stratified gene knockdown condition to be assigned to a position on the cell cycle manifold, while restricting those assignments such that they were based on gene expression patterns earned on a larger and more informative dataset (allowing for batch effect expression differences)."
DOI: 10.5281/zenodo.14024542
title: VeloCycle-estimated cell cycle phases of single cells from a genome-scale perturb-seq performed in K562

description: Continuous cell cycle phase position between 0 and 2π estimated by VeloCycle (Lederer et al., Nature Methods 2024) for single cells of the perturb-seq performed in the K562 CML cell line by Replogle et al., Cell 2022. 

Underlies the cell cycle imbalances inferred in Pulver & Forey et al., 2024.

Method manuscript exerpt:

"For analysis on the genome-wide perturb-seq dataset of K562 cells (Replogle et al., 2022), a transfer learning approach was applied. Condition-independent estimation of the periodic Fourier series components would be especially challenging on Perturb-seq knockdown conditions containing either (1) very few cells or (2) cells belonging to just one phase of the cell cycle. To infer accurate cell cycle phases for these cells, we first performed manifold-learning for 5,000 training steps to estimate the gene harmonic coefficients (ν0, ν1sin, ν1cos) on a larger set of non-targeting control (NT) K562 cells (75,328 cells), which are more evenly distributed throughout the various phases of the cell cycle. Next, we ran manifold-learning again for 5,000 training steps, but on the entire perturb-seq dataset of 1,971,608 cells and 4,127 gene knockdown conditions (with at least 75 cells per condition). This time, we conditioned VeloCycle on the gene harmonic coefficients learned in the first step. This allowed cells belonging to each stratified gene knockdown condition to be assigned to a position on the cell cycle manifold, while restricting those assignments such that they were based on gene expression patterns earned on a larger and more informative dataset (allowing for batch effect expression differences)."
DOI: 10.15468/dl.dheqcv
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon gabonensis Stapf",
 "Continent is Africa"
 ]
}

 The dataset includes 327 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017427-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27448605
title: The experimental data

description: 实验数据
DOI: 10.6084/m9.figshare.27448605.v1
title: 实验数据

description: 实验数据
DOI: 10.15468/dl.e9wqdr
title: Occurrence Download

description: A dataset containing 8683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon gayanus Kunth",
 "Continent is Africa"
 ]
}

 The dataset includes 8683 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017428-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9df6tj
title: Occurrence Download

description: A dataset containing 2866492247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2866492247 records from 59421 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017396-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdhxyq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedyotis beddomei Hook.f."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237970-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xghzf
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andira macrothyrsa Ducke"
 ]
}

 The dataset includes 136 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0336370-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyjxxo
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Geonoma schottiana Mart.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 433 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003256-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sd5twv
title: Occurrence Download

description: A dataset containing 26143 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Partial Amphibians Collection"
 ]
}

 The dataset includes 26143 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004857-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54jhs5
title: Occurrence Download

description: A dataset containing 2685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-94.87345 41.28326,-69.18845 41.28326,-69.18845 56.52977,-94.87345 56.52977,-94.87345 41.28326))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Storeria dekayi (Holbrook, 1839)",
 "Year 2018-2021"
 ]
}

 The dataset includes 2685 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049470-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y9mu5
title: Occurrence Download

description: A dataset containing 2004 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Yucca gloriosa L."
 ]
}

 The dataset includes 2004 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049011-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aq6paf
title: Occurrence Download

description: A dataset containing 20591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rodentia",
 "HasCoordinate is TRUE",
 "Country is Colombia"
 ]
}

 The dataset includes 20591 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014625-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.otuzqw
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tovarochloa peruviana T.D.Macfarl. & But"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001776-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3f6yjy
title: Occurrence Download

description: A dataset containing 2068 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ortalis garrula (Humboldt, 1805)"
 ]
}

 The dataset includes 2068 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049022-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j27hbz
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ceroxylon ceriferum (H.Karst.) Pittier",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004858-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szz7jh
title: Occurrence Download

description: A dataset containing 4206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Selasphorus rufus (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 4206 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001791-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6djeje
title: Occurrence Download

description: A dataset containing 2859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Myiarchus apicalis P.L.Sclater & Salvin, 1881",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2859 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035576-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvzk6n
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis rubiginosus Bocourt, 1873"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038022-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kep8ep
title: Occurrence Download

description: A dataset containing 12734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juniperus thurifera L."
 ]
}

 The dataset includes 12734 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0336371-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzum6e
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Pluchea odorata (L.) Cass.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 620 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069371-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nehn5g
title: Occurrence Download

description: A dataset containing 446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-81 35,-80.5 35,-80.5 35.5,-81 35.5,-81 35))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Setophaga petechia (Linnaeus, 1766)"
 ]
}

 The dataset includes 446 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076762-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jgsh5
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal",
 "Country is Andorra"
 ]
 },
 "TaxonKey is Graptemys pseudogeographica (Gray, 1831)"
 ]
}

 The dataset includes 99 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078087-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gapuku
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus polystictus (Cope, 1865)"
 ]
}

 The dataset includes 340 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075881-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cq25ca
title: Occurrence Download

description: A dataset containing 23342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "Country is Colombia",
 "Year 2005-2016",
 "TaxonKey is Anura"
 ]
}

 The dataset includes 23342 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006542-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7syfpr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Geometry POLYGON ((82.28628 16.71796, 82.27066 16.71796, 82.24825 16.71906, 82.22991 16.72125, 82.20207 16.74763, 82.20954 16.76961, 82.21565 16.77950, 82.22649 16.78170, 82.30190 16.75203, 82.31480 16.73774, 82.30869 16.72345, 82.28628 16.71796))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074472-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8tj5s
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is HSU Vertebrate Museum Mammals Collection",
 "Country is Tanzania, United Republic of"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108828-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m42e28
title: Occurrence Download

description: A dataset containing 18152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremopterix verticalis (A.Smith, 1836)"
 ]
}

 The dataset includes 18152 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0391319-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p1ceqa9x
title: Island of Hawaiʻi lidar-based habitat suitability for ʻākohekohe (Palmeria dolei) conservation introductions, 2023

description: This dataset comprises high-resolution geotif files representing various aspects of the ʻākohekohe (Palmeria dolei) potential habitat on the Island of Hawaiʻi. It includes a habitat suitability map showing average suitability scores, a map of homogenous forested areas (HFAs) depicting clusters with consistent suitability scores, and a map of pixel-wise standard deviation across habitat suitability models. These maps were generated through a comprehensive analysis using lidar-based metrics, offering detailed insights into the habitat preferences of ʻākohekohe.
DOI: 10.15468/dl.ybwyj2
title: Occurrence Download

description: A dataset listing the 300489 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 300489 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195591-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.