cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7971083
title: Zebrafish Tracking Analysis Tool

description: <b>Zebrafish Tracking Analysis Tool - runs in Matlab Version 2014</b><br>The software is unsupported so please collaborate with a software specialist to update to current Matlab version. This will need to be done annually. Please see Deakin et al. 2019 below for details. <br>Included are all files and the software code both indexed and formatted.<br><b>The software is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i>AlZu'bi, HS. 2015. Analysis of human activities and animal behaviours based on computation intelligence. Ph.D Thesis, University of Liverpool, Liverpool, UK.
DOI: 10.6084/m9.figshare.7971053
title: functional annotation statistics

description: S. suberectus genome gene annotation statistics used NR, Swiss-Prot, KEGG and Interpro databases
DOI: 10.6084/m9.figshare.7971113.v1
title: gVCF_HG01140

description: 1000 Genomes gVCF mapped to hs37d5 for HG01140. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7970963
title: Utility of TRAP markers to determine indel mutation frequencies induced by gamma-ray irradiation of faba bean (<i>Vicia faba</i> L.) seeds

description: <b>Purpose:</b> The aims were to determine the optimal gamma ray dose for faba bean (<i>Vicia faba</i>) and to identify genetic variation and indel mutation frequency among mutants using target region amplification polymorphism (TRAP) markers. <b>Materials and methods:</b> Seeds from 10 elite lines were irradiated with gamma rays (50–700 Gy), and germination, survival rate, and representative morphological traits were measured. The extent of DNA damage was investigated using comet assays, and TRAP markers were used to evaluate genetic variation, genetic diversity, and mutation frequencies. <b>Results:</b> Germination percentages significantly decreased at doses &gt;100 Gy. Survival percentages and morphological traits decreased with elevation in dose. The comet assays revealed that high irradiation doses decreased head DNA levels. Phylogenetic and principal component analysis of 555 individual faba bean plants resolved eight major groups. Genetic variation between controls and mutants was limited to within groups. Mutation frequencies were associated with gamma dose in each mutant line. <b>Conclusions:</b> The optimal gamma dose was 100–150 Gy on the basis of survival percentage and morphological response analysis. The TRAP markers distinguished mutant lines and showed association between mutation frequency and gamma doses. This study will be useful for faba bean mutation breeding and may be applicable to other crops.
DOI: 10.6084/m9.figshare.7970993
title: Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets

description: These files provide the supplementary data supporting Dempster et al., "Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets." They represent the results of two genome-scale CRISPR-Cas9 screens performed in cancer cell lines by the Broad Institute of Harvard and MIT and the Wellcome Sanger Institute. Readcount data for the 147 cell lines and 16,733 genes screened independently by both institutes were collected and analyzed for agreement. For file descriptions, see README. For additional descriptions of methods, see Dempster et. al.
DOI: 10.6084/m9.figshare.12876204.v8
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.25377/sussex.7970924
title: Dataset for Everyday Childhoods research project. Sean - Recursive Interview

description: This data was collected as part of Sean's recursive interview, carried out on the 18/08/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.12876204.v12
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.6084/m9.figshare.7971083.v1
title: Zebrafish Tracking Analysis Tool

description: <b>Zebrafish Tracking Analysis Tool - runs in Matlab Version 2014</b><br>The software is unsupported so please collaborate with a software specialist to update to current Matlab version. This will need to be done annually. Please see Deakin et al. 2019 below for details. <br>Included are all files and the software code both indexed and formatted.<br><b>The software is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i>AlZu'bi, HS. 2015. Analysis of human activities and animal behaviours based on computation intelligence. Ph.D Thesis, University of Liverpool, Liverpool, UK.
DOI: 10.25377/sussex.7970924.v1
title: Dataset for Everyday Childhoods research project. Sean - Recursive Interview

description: This data was collected as part of Sean's recursive interview, carried out on the 18/08/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.12876204.v10
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.6084/m9.figshare.12876204.v11
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.6084/m9.figshare.12876204.v9
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.6084/m9.figshare.7970963.v2
title: Utility of TRAP markers to determine indel mutation frequencies induced by gamma-ray irradiation of faba bean (<i>Vicia faba</i> L.) seeds

description: <b>Purpose:</b> The aims were to determine the optimal gamma ray dose for faba bean (<i>Vicia faba</i>) and to identify genetic variation and indel mutation frequency among mutants using target region amplification polymorphism (TRAP) markers. <b>Materials and methods:</b> Seeds from 10 elite lines were irradiated with gamma rays (50–700 Gy), and germination, survival rate, and representative morphological traits were measured. The extent of DNA damage was investigated using comet assays, and TRAP markers were used to evaluate genetic variation, genetic diversity, and mutation frequencies. <b>Results:</b> Germination percentages significantly decreased at doses &gt;100 Gy. Survival percentages and morphological traits decreased with elevation in dose. The comet assays revealed that high irradiation doses decreased head DNA levels. Phylogenetic and principal component analysis of 555 individual faba bean plants resolved eight major groups. Genetic variation between controls and mutants was limited to within groups. Mutation frequencies were associated with gamma dose in each mutant line. <b>Conclusions:</b> The optimal gamma dose was 100–150 Gy on the basis of survival percentage and morphological response analysis. The TRAP markers distinguished mutant lines and showed association between mutation frequency and gamma doses. This study will be useful for faba bean mutation breeding and may be applicable to other crops.
DOI: 10.6084/m9.figshare.12876177
title: Additional file 1 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 1:Pfam Domain Search Result of negative dataset. The file presents Pfam domain search result on negative training set. (XLS 1 MB)
DOI: 10.6084/m9.figshare.12876180.v1
title: Additional file 2 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 2:Adhesins and adhesin like proteins predicted by FungalRV adhesin Predictor in 8 human fungal pathogens. The file lists 307 adhesins and adhesin like proteins obtained by "FungalRV adhesin predictor" run on entire proteomes of eight human pathogenic fungal species along with their FungalRV adhesin predictor scores. Known adhesins are coloured in Green. (XLS 100 KB)
DOI: 10.6084/m9.figshare.12876183
title: Additional file 3 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 3:GPI anchored proteins predicted as adhesin by FungalRV adhesin predictor. FungalRV adhesin predictor predicted many cell surface GPI anchored proteins as novel adhesins. These proteins along with their FungalRV adhesin predictor score are listed in this file. (XLS 28 KB)
DOI: 10.6084/m9.figshare.12876183.v1
title: Additional file 3 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 3:GPI anchored proteins predicted as adhesin by FungalRV adhesin predictor. FungalRV adhesin predictor predicted many cell surface GPI anchored proteins as novel adhesins. These proteins along with their FungalRV adhesin predictor score are listed in this file. (XLS 28 KB)
DOI: 10.25377/sussex.7970870
title: Dataset for Everyday Childhoods research project. Sean - Favourite Things Interview

description: This data was collected as part of Sean's favourite things interview, carried out on the 13/03/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.12876186
title: Additional file 4 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 4:Predicted adhesins from Candida glabrata with similarity to either flocculins or STA1. Predicted adhesins from Candida glabrata with similarity to either flocculins or STA1 by "FungalRV adhesin predictor" along with their "FungalRV adhesin predictor" scores are listed in this file. (XLS 24 KB)
DOI: 10.6084/m9.figshare.12876189
title: Additional file 5 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 5:"FungalRV adhesin predictor" scores of In-silico predicted adhesins by Weig et al. "FungalRV adhesin predictor" scores of In-silico predicted adhesins by Weig et al. are listed in this file. (XLS 31 KB)
DOI: 10.25377/sussex.7970870.v1
title: Dataset for Everyday Childhoods research project. Sean - Favourite Things Interview

description: This data was collected as part of Sean's favourite things interview, carried out on the 13/03/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.12876189.v1
title: Additional file 5 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 5:"FungalRV adhesin predictor" scores of In-silico predicted adhesins by Weig et al. "FungalRV adhesin predictor" scores of In-silico predicted adhesins by Weig et al. are listed in this file. (XLS 31 KB)
DOI: 10.6084/m9.figshare.12876180
title: Additional file 2 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 2:Adhesins and adhesin like proteins predicted by FungalRV adhesin Predictor in 8 human fungal pathogens. The file lists 307 adhesins and adhesin like proteins obtained by "FungalRV adhesin predictor" run on entire proteomes of eight human pathogenic fungal species along with their FungalRV adhesin predictor scores. Known adhesins are coloured in Green. (XLS 100 KB)
DOI: 10.6084/m9.figshare.12876192.v1
title: Additional file 6 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 6:Adhesins and adhesin like proteins predicted by "FungalRV adhesin predictor" in other pathogenic fungi with low incidence of occurrence. The file lists adhesins and adhesin like proteins obtained by "FungalRV adhesin predictor" run on entire proteomes of some of the human pathogenic fungi with low incidence of occurrence along with their FungalRV adhesin predictor scores. (XLS 72 KB)
DOI: 10.6084/m9.figshare.12876177.v1
title: Additional file 1 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 1:Pfam Domain Search Result of negative dataset. The file presents Pfam domain search result on negative training set. (XLS 1 MB)
DOI: 10.6084/m9.figshare.12876192
title: Additional file 6 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 6:Adhesins and adhesin like proteins predicted by "FungalRV adhesin predictor" in other pathogenic fungi with low incidence of occurrence. The file lists adhesins and adhesin like proteins obtained by "FungalRV adhesin predictor" run on entire proteomes of some of the human pathogenic fungi with low incidence of occurrence along with their FungalRV adhesin predictor scores. (XLS 72 KB)
DOI: 10.6084/m9.figshare.7970819
title: Antaresia childreni data for Brusch et al CORT ms

description: data for Brusch et al A. childreni manuscript
DOI: 10.6084/m9.figshare.7970828
title: Supplementary Material for: Incident Mobility Disability, Mild Cognitive Impairment, and Mortality in Community-Dwelling Older Adults

description: <b><i>Background/Aims:</i></b> Mobility disability and mild cognitive impairment (MCI) are common in aging and both are associated with risk of death. This study tested the hypothesis that risk of death differs by the order in which mobility disability and MCI occurred. <b><i>Methods:</i></b> One thousand two hundred and sixty-two community-dwelling older adults were unimpaired at baseline and followed annually. Mobility disability was based on measured gait speed, and MCI was based on cognitive performance tests. A multistate Cox model simultaneously examined incidences of mobility disability and MCI to determine whether the order of their occurrence is differentially associated with risk of death. <b><i>Results:</i></b> The average age was 75.3 years and 70% were female. While mobility disability occurred more frequently than incident MCI, the subsequent risk of death was higher in participants who developed MCI alone compared to those who developed mobility disability alone (hazard ratio [HR] 1.70, <i>p</i> = 0.018). Of the participants who initially developed mobility disability, about half subsequently developed MCI that doubled their risk of death (HR 2.17, <i>p</i> &lt; 0.001). By contrast, over two-third who developed MCI subsequently developed mobility disability, which did not further increase their risk of death. <b><i>Conclusion:</i></b> Mobility disability occurs more frequently in community-dwelling older adults, but MCI is more strongly associated with mortality.
DOI: 10.6084/m9.figshare.12876186.v1
title: Additional file 4 of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file 4:Predicted adhesins from Candida glabrata with similarity to either flocculins or STA1. Predicted adhesins from Candida glabrata with similarity to either flocculins or STA1 by "FungalRV adhesin predictor" along with their "FungalRV adhesin predictor" scores are listed in this file. (XLS 24 KB)
DOI: 10.6084/m9.figshare.7970816
title: Dehydration enhances immunity in snake community

description: Data association with Brusch et al. 2019
DOI: 10.6084/m9.figshare.7970819.v1
title: Antaresia childreni data for Brusch et al CORT ms

description: data for Brusch et al A. childreni manuscript
DOI: 10.6084/m9.figshare.7970768
title: Supplementary Material for: Management of Perioperative Iron Deficiency Anemia

description: Preoperative anemia affects 30–40% of patients undergoing major surgery and is an independent risk factor for perioperative blood transfusion, morbidity, and mortality. Absolute or functional iron deficiency is its leading cause. Nonanemic hematinic deficiencies are also prevalent and may hamper preoperative hemoglobin optimization and/or recovery from postoperative anemia. As modifiable risk factors, anemia and hematinic deficiencies should be detected and corrected prior to major surgical procedures. Postoperative anemia is even more common (up to 80–90%) due to surgery-associated blood loss, inflammation-induced blunted erythropoiesis, and/or preexisting anemia. Preoperative oral iron may have a role in mild-to-moderate anemia, provided there is sufficient time (6–8 weeks) and adequate tolerance of oral preparations. Postoperative oral iron is of little value and rife with gastrointestinal adverse events. Intravenous iron should preferentially be used in cases of moderate-to-severe iron deficiency anemia, concomitant use of erythropoiesis-stimulating agents, short time to surgery or nonelective procedures, and for postoperative anemia management. Minor infusion reactions to intravenous iron are rare, the incidence of severe anaphylactic reactions is extremely low, and there is no increase in infections with intravenous iron. Currently available intravenous iron formulations allowing administration of large single doses are preferred.
DOI: 10.25377/sussex.7970765
title: Dataset for Everyday Childhoods research project. Jasmine - Recursive Interview

description: This data was collected as part of Jasmine's recursive interview, carried out on the 26/09/2014 with Ester McGeeney. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7970816.v1
title: Dehydration enhances immunity in snake community

description: Data association with Brusch et al. 2019
DOI: 10.25377/sussex.7970765.v1
title: Dataset for Everyday Childhoods research project. Jasmine - Recursive Interview

description: This data was collected as part of Jasmine's recursive interview, carried out on the 26/09/2014 with Ester McGeeney. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970729
title: Dataset for Everyday Childhoods research project. Jasmine - Favourite Things Interview

description: This data was collected as part of Jasmine's favourite things interview, carried out on the 18/02/2014 with Ester McGeeney. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970723
title: Dataset for Everyday Childhoods research project. Funmi - Recursive Interview

description: This data was collected as part of Funmi's recursive interview, carried out on the 09/12/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970729.v1
title: Dataset for Everyday Childhoods research project. Jasmine - Favourite Things Interview

description: This data was collected as part of Jasmine's favourite things interview, carried out on the 18/02/2014 with Ester McGeeney. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970723.v1
title: Dataset for Everyday Childhoods research project. Funmi - Recursive Interview

description: This data was collected as part of Funmi's recursive interview, carried out on the 09/12/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970714
title: Dataset for Everyday Childhoods research project. Funmi - Day in a Life

description: This data was collected as part of Funmi's day in a life observation carried out on the 25/06/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970693
title: Dataset for Everyday Childhoods research project. Funmi - Favourite Things Interview

description: This data was collected as part of Funmi's favourite things interview, carried out on the 10/02/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970681
title: Dataset for Everyday Childhoods research project. Aliyah - Recursive Interview

description: This data was collected as part of Aliyah's recursive interview, carried out on the 30/07/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970693.v1
title: Dataset for Everyday Childhoods research project. Funmi - Favourite Things Interview

description: This data was collected as part of Funmi's favourite things interview, carried out on the 10/02/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.25377/sussex.7970681.v1
title: Dataset for Everyday Childhoods research project. Aliyah - Recursive Interview

description: This data was collected as part of Aliyah's recursive interview, carried out on the 30/07/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.7970666
title: Bat Recording Manager v7.3

description: <br>The current version (7.3) is only supported for use on Windows 10. Although the program itself can run under Windows 8 the installation of the database server is problematic.Version 7.3.7038 has resolved the installation problems encountered with version 7.2 and has been successfully installed on a Virgin Windows 10 computer. It does have a problem when importing data from recordings with Wildlife Acoustics recorders that store their own metadata in WAMD format and which have been analysed using Kaleidoscope. In this case the metadata is not imported correctly. There is no problem in situations where Kaleidoscope stores the analysis data in GUANO format, or when using Audacity. This problem is currently being worked on.version 7.3.7045 now works correctly with both WAMD and GUANO metadata or combinations of both. Also fixes a few other bugs and ensures that file extensions are not case sensitive.v7.3.7048 has minor changes to the installer to only try to install the database server if it is not already installed.v7.3.7062 fixes some problems with the import pictures function and cosmetic problems in the Import function. Also fixes scrolling problem in recordings list.version 7.3.7067 corrects some inconsistencies in the open folder dialogs and tidies up some of the UI operations adding COMP-ALL buttons for the three main view panes and allowing a double-click to open a labelled segment in Audacity.<br>
DOI: 10.25377/sussex.7970654
title: Dataset for Everyday Childhoods research project. Aliyah - Day in a Life

description: This data was collected as part of Aliyah's day in a life observation, carried out on the 07/04/2014 with Liam Berriman. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.