cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/7df0at
title: Trajectory Data for "A multiscale 3D chemotaxis assay reveals bacterial navigation mechanisms"

description: 2021-06-07

Trajectory Data for 
"A multiscale 3D chemotaxis assay reveals bacterial navigation mechanisms"
by
Marianne Grognot & Katja M. Taute*
Rowland Institute at Harvard
100 Edwin H Land Blvd
Cambridge, MA 02142
USA
*taute@rowland.harvard.edu
Communications Biology 4:669 (2021)
https://doi.org/10.1038/s42003-021-02190-2


The two .mat files provide all trajectory data presented in the article in Matlab structure format. 
The file "EcoliTrajectories.mat" contains all E. coli trajectories.
The file "CcrescentusTrajectories.mat" contains all C. crescentus trajectories.
Trajectory position data are ADMM filtered as described in the Methods section of the manuscript.

Each file contains multiple Matlab structures starting with "V_", each corresponding to one dataset. 

Each structure V contains the following fields:
* V.Speeds is a cell array where each cell corresponds to one trajectory. The trajectory is described by an array with the following columns:
 - column 1: frame number
 - column 2-4 : x, y and z positions (in micrometers)
 - column 6-8 : instantaneous speed in x, y and z (micrometer per second)
 - column 9 : absolute value of instantaneous speed (micrometer per second)
 - column 10 : angular change in direction between frames (degrees)
* V.Parameters is a simplified structure with descriptive parameters, containing only the field V. parameters.fps which gives the frame rate of the acquisitions (frames per second)




***** EcoliTrajectories.mat *****

Three types of V structures are given (with reference to the datasets detailed in SI Table 2):

1) All motile trajectories in dataset "Speed in reservoirs over time", named in format "V_XXmin" where XX stands for the delay time. 

2) all motile trajectories from biological replicates in 10 µM/mm MeAsp gradients
format V_MeAspX_MMDD with 
 . X being the # of the biological replicate at that date (if several replicates within the day)
 . MMDD date of experiment
 . "_bulk" or nothing at the end. Those ending in "_bulk" contain only trajectory segments with a distance of at least 10 µm from the surface.

3) Control experiments with different MeAsp gradients (dataset "Geometry tests MeAsp')
 * V_MeAsp_1mM_0512_bulk 1 mM/mm
 * V_MeAspInverted_1mM_0512_bulk -1 mM/mm
 * V_Reference_0503_bulk 0 mM/mm



***** CcrescentusTrajectories *****

Two types of V structures are given :
1) all motile bulk trajectories sorted by biological replicate, named after the date of experiment V_MMDD

2) trajectories sorted by analysis subsets (v)
 . V all trajectories combined (set #1)
 . V_motilebulk (set #2)
 . V_analyzed trajectories on which we run turn detection (set #3)
 . V_smooth smooth swimmers (set #4)
 . V_1turnormore 1+ turn detected (set #5)
 . V_1runormore 1+ run detected (set #6)
 . V_1idrunormore 1+ run identified as a forward or backward (set #7)
 . V_1FWand1BWormore trajectories with at least of backward and one forward (set #8)
DOI: 10.7910/dvn/anl7ol
title: Replication Material for: Fragmented Foes: Affective Polarization in the Multiparty Context of the Netherlands (Electoral Studies)

description: Replication syntax for the analyses reported in this article. The two datasets can be accessed through the LISS Data Archive. 

(1) The dataset "Affective polarization": https://www.dataarchive.lissdata.nl/study_units/view/1087
(2) The dataset "Politics and Values, 2019": https://www.dataarchive.lissdata.nl/study_units/view/807
DOI: 10.7910/dvn/n0fbsd
title: A07_16240.JPG

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/f238adaf-eb41-9ee7-f81d-443cec315135'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/f238adaf-eb41-9ee7-f81d-443cec315135
DOI: 10.7910/dvn/phf02i
title: Macro-historical Influences, Cohort Dynamics, and the (in)Stability of the Age-Crime Distribution: The Case of the Republic of Korea

description: The analysis involves age-specific arrest data from 1979 to 2019 in Korea, administered by the Supreme Prosecutor's Office of Korea (SPOK). For the years prior to 2014, we utilized publicly available age-grouped arrest data, which consisted of a mix of 1-year, 5-year, and 10-year brackets. We applied osculatory interpolation techniques to disaggregate these age-grouped data and rearrange the age groups to align with our selected birth cohorts. For the years 2014–2019, we obtained 1-year age-specific arrest data from the Supreme Prosecutor's Office of Korea through a request made to the Open Data Mediation Committee for research purposes (For more details on the request process, please visit https://www.data.go.kr/en/index.do). However, we do not have permission to redistribute this data. Consequently, the data file does not contain the age-specific arrest data used in our analysis. Nonetheless, it will illustrate how we structured our age-period-cohort data, along with the population data used for analysis. The Stata do-file provided will demonstrate the codes we used for the analysis. Please do not hesitate to contact the corresponding author with any questions or if you find any errors in our data and code.
DOI: 10.7910/dvn/zjl2yr
title: Japanese Version of Correspondence Table between ISCO-88 and ISCO-08 Unit Groups

description: &lt;p&gt;
The Dataset includes the correspondence table between ISCO-88 and ISCO-08 in Japanese, accompanied with the ISCO-88 group titles in Japanese. 
&lt;/p&gt;
&lt;p&gt;
&lt;b&gt;
Users are asked to explicitly cite the data.
&lt;/b&gt;
&lt;/p&gt;
DOI: 10.7910/dvn/aomya
title: House Unpassed Legislation 1849, Docket 2318A, SC1/series 230, Petition of Alfred Wyman

description: &lt;p&gt;Petition subject: Abolition of capital punishment &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13481485"&gt;http://nrs.harvard.edu/urn-3:FHCL:13481485&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Westminster &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Alfred Wyman, Westminster, Mass.; R.H. Williams, Norton; committee on the subject &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Alfred Wyman&lt;/li&gt;&lt;li&gt;John White&lt;/li&gt;&lt;li&gt;Abby Wyman&lt;/li&gt;&lt;li&gt;Abigail Thayer&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1849-02-27,1849-02-28 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on February 27, 1849 and referred to the committee on the subject and sent for concurrence and received in the Senate on February 28, 1849 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 113 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 46 &lt;/p&gt; &lt;p&gt;Female signatures: 67 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: inhabitants, legal voters, women and others, [females], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: [Petition wrapper with the petition of Benjamin Frost] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1849, Docket 2318A &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/prfor6
title: The Effects of FDI on Innovation Systems in Hungarian Regions: Where is the Synergy Generated?

description: In this study, we show how internationalization and foreign-owned firms influence
synergies in the regional innovation systems of Hungary. We first distinguish three
innovation system functions (knowledge exploitation, knowledge exploration, and
organizational control) operating in regions and study their interactions using entropy
statistics. The functions and their interactions are measured by analysing the distribution
of firms in terms of geographical location, organizational size (number of employees),
technologies (NACE codes of the OECD), and ownership (foreign versus domestic share
in registered stock) in the 2005. Synergy is defined as mutual information among the three
dimensions; a fourth dimension is added in order to bring internationalization (FDI) into
the model. The factor is relevant since the four-dimensional model explains the GDP
contributions to regional development in Hungary, whereas the three-dimensional model
does not. We find that regional innovation systems in Hungary are self-organized
differently, in relation to a relatively small number of foreign firms. These firms have a
large positive effect on synergy in regions between the Hungarian capital and the Austrian
border. However, FDI has negative effects on domestic synergy in the lagging eastern and
southern provinces of the country.
DOI: 10.7910/dvn/uauewv
title: Replication Data for: The Provision of Insurance? Judicial Independence and the Post-tenure Fate of Leaders

description: Leading explanations of judicial independence argue political competition incentivizes
those in power to create independent courts as insurance against uncertain futures.
While much work addresses the role competition plays, little analyzes the fundamental
assumption that courts provide political insurance. I offer an original hypothesis as to
how independent courts provide insurance against post-tenure punishment and test
this using data on post-tenure fate of leaders from 1960-2004. Results show
independence is associated with significantly higher probabilities of unpunished posttenure fate. The article builds on and extend existing political insurance explanations, and offers the first test of one of their critical assumptions.
DOI: 10.7910/dvn/79crqj
title: Global urban entities (2000–2024): A novel perspective to delineate urban entities based on consistent nighttime light data

description: Global urban entities (2000–2024): A novel perspective to delineate urban entities based on consistent nighttime light data
DOI: 10.7910/dvn/mmyaoy
title: Replication Data for: Which Narrative Strategies Durably Reduce Prejudice? Evidence From Field and Survey Experiments Supporting the Efficacy of Perspective-Getting

description: Exclusionary attitudes towards outgroups contribute to social and political challenges worldwide. Previous field experiments found that interpersonal conversations employing multiple narrative strategies can durably reduce exclusionary attitudes. We theoretically distinguish between three of these narrative strategies: narratives which promote analogic perspective-taking, vicarious perspective-giving, and perspective-getting. Previous research has assigned these strategies together in a compound treatment, leaving open important theoretical and practical questions about each's effectiveness. We present results from three field studies and a survey experiment that individually manipulate their presence. Across the field studies, we find omitting prompts to engage in analogic perspective-taking and vicarious perspective-giving does not diminish effects; conversations employing only perspective-getting narratives durably reduce exclusionary attitudes. Results from within-subject analyses and a survey experiment similarly show that perspective-getting consistently reduces exclusionary attitudes and activates multiple mechanisms. These results refine theoretical understandings of prejudice reduction and support facilitating perspective-getting in conversations intended to reduce exclusionary attitudes.
description: This dataset underwent an independent verification process that replicated the tables and figures in the primary article. For the supplementary materials, verification was performed solely for the successful execution of code. The verification process was carried out by the Odum Institute for Research in Social Science at the University of North Carolina at Chapel Hill.
<br>
The associated article has been awarded Open Materials and Open Data Badges. Learn more about the Open Practice Badges from the Center for Open Science.<br>
DOI: 10.7910/dvn/abtksk
title: Replication Data for: Grist for the Hill: How Constituency Concerns Influence Congress’s Attention to Issues and Legislators’ Policy-Seeking Activities

description: How does Congress identify issues of sufficient concern to warrant consideration? Since the late 19th century, bill sponsorship by individual members has been the primary mechanism for winnowing the uncountable set of ideas for change to a finite agenda. Previous scholarship emphasizes electoral considerations and members’ policy goals as motivating factors; however, the scant evidence for significant electoral returns to bill sponsorship raises questions about whether constituency concerns influence legislators’ attention. We present a theory of bill sponsorship as constituency-minded policy-seeking activity and test its predictions using an original dataset of bills introduced in the House of Representatives between 1881 and 1931. Using event count models and Monte Carlo simulations, we find that constituency concerns directly affect legislators’ attention and indirectly influence bill sponsorship through committee assignments. These findings from a period where bill sponsorship was expansive and resource intensive illuminate how electoral factors and resource-based concerns shape legislative performance.
DOI: 10.7910/dvn/obww3j
title: Datasets for: Escape from a transient rock vapor atmosphere as the mechanism for fractionation of the Moon’s moderately volatile elements.

description: In this supporting file we describe the captions of eleven datasets that we used for plotting the Figure 1 to 12 in the manuscript. The equations and parameters have been demonstrated in the text. Since this is a modeling paper, we do not collect or create any original data. All the data used in the datasets are referred to previous publications, which have been cited in the manuscript and references.
DOI: 10.7910/dvn/ozoany
title: California Poll: 8004 -- July 18-24, 1980

description: The Field Poll, established in 1945 as The California Poll by Mervin Field, has operated continuously as an independent, non-partisan, media-sponsored public opinion news service. Each year the Field Polls cover a wide range of political and social topics examining California public opinion. Continuing measures are made of voter support for leading political figures vying for major state and federal offices, job ratings of important political figures and reactions to significant political events. Voter aw
areness, understanding and predispositions of major campaign issues and salient statewide ballot propositions are also tracked over time. For poll 8004 N=1018.
description: Subject: STANDARD DEPOSIT TERMS 1.0 Type: DATAPASS:TERMS:STANDARD:1.0 Notes: The UCLA Social Science Data Archive (“the Archive”) gives permission and any required licenses to Data-PASS to make the Content available for archiving, preservation and access (with permission of the Archive), within the Data Preservation Alliance for the Social Sciences ("Data-PASS") in accordance with the Data-PASS terms (the "Terms") of use (available from: http://www.icpsr.org/Data-PASS). Including permission to: (a) redisseminate copies of the Data Collection in a variety of distribution formats only according to the standard terms of use of the Archive; (b) promote and advertise the Data Collection in any publicity (in any form) for Data-PASS and the Archive; (c) describe, catalog, validate and document the Content; (d) store, translate, copy
or re-format the Data Collection in any way to ensure its future preservation and accessibility, improve usability and/or protect respondent confidentiality; (e) incorporate metadata (cataloging information) or documentation regarding this study into public access catalogues. The Archive represents and warrants that the Content conforms to all Terms and that the Archive is lawfully entitled and has full authority to license Data-Pass to use the Materials in the ways described in the Terms.;
DOI: 10.7910/dvn/4vo8xt
title: Replication Data for: "Intergenerational Immobility: A Legacy of Racial Violence"

description: Data and code to replicate results in the paper and its online appendix. See readme.txt for the description of replication files.
DOI: 10.7910/dvn/jp0t5t
title: Replication Data for: Resource Wealth: A "Curse" for Labor Rights?

description: Replication materials for this article (in Stata). Includes data, the do file and the log for all analyses used in this article.
DOI: 10.7910/dvn/6znw7w
title: Replication Data for: Analysis and graphic plots in Rios et al. J Gen Physiol 2024

description: These analysis documents are identified in the "traceback" line appended to every figure and table legend in the article by Rios et al., J Gen Physiol 2024.
description: This dataset contains only analysis files. Original images (with identifiers in fig. legends of Rios et al. 2024) are in Dataset "Electron-microscopic images processed by AI modules of Rios et al. J Gen Physiol 2024", in Harvard Dataverse
DOI: 10.7910/dvn/myrdqc
title: Volunteer Science Validation Study

description: This data and code replicate the study "Volunteer Science: An Online Laboratory for Experiments in Social Psychology," forthcoming in Social Psychology Quarterly. It contains:

A Readme.docx File
Original experiment code
Raw consented data
Computer code for cleaning raw data
Clean data
Computer code for analyzing clean data
DOI: 10.7910/dvn/6zq5ef
title: Replication Data for: Impact Vitality at the Institutional Level for Greek Departments of Computer Science-Engineering

description: Data used in the paper
Impact Vitality at the Institutional Level for Greek Departments of Computer Science-Engineering.
Yearly citations of faculties in greek depts informatics, computer science/engineering
DOI: 10.7910/dvn/andl1n
title: Multimorbidity in Zimbabwe: Evidence and Priorities Dialogue: Workshop Report. 01 December 2023, Harare, Zimbabwe

description: This stakeholder dialogue brought together policymakers, researchers, technical partners, clinicians, community and patient representatives to deliberate on current evidence and identify priorities for responding to multimorbidity in Zimbabwe. The deposited document contains the final workshop report, including summaries of presentations, panel discussions, and key priority areas. The dialogue was supported by the Wellcome Trust, UK (grant no: 222177/Z/20/Z), in partnership with the Ministry of Health and Child Care Zimbabwe, The Organization for Public Health Interventions and Development, The Health Research Unit Zimbabwe, and the University of Zimbabwe.
DOI: 10.7910/dvn/lqupjw
title: Replication Data for: Fiscal Policy Preferences, Trade-Offs, and Support for Social Investment

description: A common finding in the literature is that social investment policies are broadly popular among citizens, but still politically difficult to implement. This paper provides a partial answer to this puzzle by exploring the fiscal trade-offs associated with such a recalibration. Based on survey data from eight Western European countries, it first explores citizens’ fiscal policy preferences with regard to the preferred size of the public sector and the distribution of spending across different sub-sectors. These preferences are then shown to be significantly associated with attitudes towards fiscal trade-offs regarding the expansion of social investment policies. The results reveal a political dilemma for policy-makers keen on expanding social investment: People who traditionally support a large public sector and more welfare state spending tend to oppose redistributing spending towards social investment, whereas support for such a recalibration is higher among those who have a sceptical view on public spending.
DOI: 10.7910/dvn/mtcdfc
title: Replication Data for: Multiple Switching and Data Quality in the Multiple Price List

description: Yu, Chi Wai, Zhang, Y. Jane, and Zuo, Sharon Xuejiing, (2021) “Multiple Switching and Data Quality in the Multiple Price List.” Review of Economics and Statistics 103:1, 136-150.
description: Volume XX, Issue X
DOI: 10.7910/dvn/n3zxkf
title: Figure 4 raw data- E11.5

description: Figure 4 raw data- E11.5
DOI: 10.7910/dvn/ppiacv
title: DCE-MRI images of rat tumor model. 3 consecutive imaging sessions in 12 rats.

description: DCE-MRI images of rat tumor model. 3 consecutive imaging sessions in 12 rats.
DOI: 10.7910/dvn/ujrjmm
title: A12_22953.JPG

description: Link to OCHRE database: &lt;a href = ''http://pi.lib.uchicago.edu/1001/org/ochre/f8af57a8-202d-4202-bbe2-7976e3cd27d2'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/f8af57a8-202d-4202-bbe2-7976e3cd27d2
DOI: 10.5517/ccdc.csd.cc2m8kk1
title: CCDC 2421303: Experimental Crystal Structure Determination

description: Related Article: Rui Feng, Zi-Ying Li, Shi-Shuang Huang, Mei-Hui Yu, Fengxia Wei, Wei Li, and Xian-He Bu|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m93y0
title: CCDC 2421842: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/pjovel
title: Wright Casebook Edited; Docketed Case: 20,003-4
DOI: 10.7910/dvn/potzrq
title: Replication Data for: Patterns of neurobehavioral functioning in school-aged survivors of neonatal jaundice and hypoxic-ischemic encephalopathy in Kilifi, Kenya: A cross-sectional study

description: &lt;p&gt;The data were obtained from a cross-sectional quantitative study on Patterns of neurobehavioral functioning in school-aged survivors of neonatal jaundice and hypoxic-ischemic encephalopathy in Kilifi&lt;/p&gt;
DOI: 10.7910/dvn/tktvk1
title: Data for Tunable superconductivity and its origin at KTaO3 interfaces

description: These data are for our paper "Tunable superconductivity and its origin at KTaO3 interfaces". The paper has been accepted by Nature Communications.
DOI: 10.5517/ccdc.csd.cc2m95ch
title: CCDC 2421886: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/ex2oct
title: ArXiv Pseudocode Data

description: The zipped JSON file includes pseudocodes extracted from arXiv along with their metadata, which includes information such as author names and paper titles.