cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15723486
title: Data and code for "Coiling in gastropods: a lead to synthesis"

description: 15 July 2025

by Ido Filin

Intro

This is a directory tree for data files, scripts and images, used by Filin (2025). This study uses previously published databy Collins et al. 2021, which includes morphometric data and images of sectioned shells, and by Noshita et al. 2012, Araki & Noshita 2023 andSchindel (1990), which include coiling parameters onmany gastropod species.

Data files and scripts

Merged and reanalyzed data are provided in csv format for the three datasets:



collins-etal-reanalysis-apertures.csv

collins-etal-reanalysis-coiling-params.csv

noshita-etal-merged.csv

schindel-merged.csv


These files were generated from original files using awk and Rscripts, see README.txt files within relevant subfolders.

An awk script for generating svg files from jpg images ofCollins et al. is also provided in the relevant subfolder. Adirectory within that subfolder contains the (renamed) originaljpg files and the generated svg images. The latter provide aconvenient way to visually examine goodness of fit of conicallogspirals to measured aperture centroids.

R-scripts and svg files for geometric analysis of images of theshells of Ecphora and Tritia (Fig 1.F,G in main text) are alsoavailable in this top folder.

Univariate statistical tests and mixed-effect linear growthmodels for the reanalyzed Collins et al. data are in the R-scriptfile collins-etal-tests.r.

Finally, the R-script fig2.r generates Fig.2 of the main text.

Changelog

15 July 2025: added three previously not analyzed specimens. See collins-etal-data.r R-scipt. 

License

CC0 license chosen, following original data of Collins et al. and Noshita et al.

Web app

A WebGL app for generating images of coiled shells was written for this study. 

References:



Filin I (2025). Coiling in gastropods: a lead to synthesis.

Schindel DE (1990).Unoccupied morphospace and the coiled geometry of gastropods:architectural constraint or geometric covariation?In Causes of Evolution: a paleontological perspective (editedby Ross R, Allmon W), pp. 270--304. University of Chicago Press, Chicago.
DOI: 10.5281/zenodo.15923935
title: Data and code for "Coiling in gastropods: a lead to synthesis"

description: 15 July 2025

by Ido Filin

Intro

This is a directory tree for data files, scripts and images, used by Filin (2025). This study uses previously published databy Collins et al. 2021, which includes morphometric data and images of sectioned shells, and by Noshita et al. 2012, Araki & Noshita 2023 andSchindel (1990), which include coiling parameters onmany gastropod species.

Data files and scripts

Merged and reanalyzed data are provided in csv format for the three datasets:



collins-etal-reanalysis-apertures.csv

collins-etal-reanalysis-coiling-params.csv

noshita-etal-merged.csv

schindel-merged.csv


These files were generated from original files using awk and Rscripts, see README.txt files within relevant subfolders.

An awk script for generating svg files from jpg images ofCollins et al. is also provided in the relevant subfolder. Adirectory within that subfolder contains the (renamed) originaljpg files and the generated svg images. The latter provide aconvenient way to visually examine goodness of fit of conicallogspirals to measured aperture centroids.

R-scripts and svg files for geometric analysis of images of theshells of Ecphora and Tritia (Fig 1.F,G in main text) are alsoavailable in this top folder.

Univariate statistical tests and mixed-effect linear growthmodels for the reanalyzed Collins et al. data are in the R-scriptfile collins-etal-tests.r.

Finally, the R-script fig2.r generates Fig.2 of the main text.

Changelog

15 July 2025: added three previously not analyzed specimens. See collins-etal-data.r R-scipt. 

License

CC0 license chosen, following original data of Collins et al. and Noshita et al.

Web app

A WebGL app for generating images of coiled shells was written for this study. 

References:



Filin I (2025). Coiling in gastropods: a lead to synthesis.

Schindel DE (1990).Unoccupied morphospace and the coiled geometry of gastropods:architectural constraint or geometric covariation?In Causes of Evolution: a paleontological perspective (editedby Ross R, Allmon W), pp. 270--304. University of Chicago Press, Chicago.
DOI: 10.15468/dl.nz89p9
title: Occurrence Download

description: A dataset containing 18472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daboecia cantabrica"
 ]
}

 The dataset includes 18472 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018100-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs8vqq
title: Occurrence Download

description: A dataset containing 75 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, genusKey, genus, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND genusKey IN (2284443, 2202786, 2161911, 2161467, 7652364, 2176168, 3092125, 2771094, 8782549, 2457378, 2453882, 2457825, 2454645, 2465626, 2466496, 2459675, 2444141, 2444221, 2447418, 2441658, 2442664, 3266899, 2473221, 2445496, 5221394, 2443339, 4553469) AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND genusKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL) AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000 GROUP BY "year", eeaCellCode, classKey, class, genusKey, genus ORDER BY "year" DESC, eeaCellCode ASC, genusKey ASC;

 The dataset's 75 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018084-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15094979
title: BigSolDB 2.0: A Comprehensive Dataset of Solubility Values for Organic Compounds in Organic Solvents and Water at Various Temperatures

description: If you use this dataset, please cite our paper: https://doi.org/10.1038/s41597-025-05559-8

BigSolDB v.2.0 contains 103944 experimentally measured solubility values of 1448 organic compounds in 213 solvents reported in the 1595 literature peer-reviewed articles

The 12 columns of this dataset are explained as follows:



SMILES_Solute — SMILES representation of the solute molecule

Temperature_K — temperature for the reported solubility value, K

Solvent — solvent name

SMILES_Solvent — SMILES representation of the solvent molecule

Solubility(mole_fraction) — the reported solubility value expressed in mole fraction of solute

Solubility(mol/L) — the recalculated solubility value expressed in molar concentration of solute (mol/L)

LogS(mol/L) — decimal logarithm of the recalculated solubility value expressed in molar concentration of solute (mol/L)

Compound_Name — solute name

CAS — solute CAS number

PubChem_CID — solute PubChem_CID

FDA_Approved — designation if the solute is a FDA approved drug. ‘Yes’ is stated for FDA approved drugs while ‘No’ is stated for others.

Source — DOI of a data source for given values


An addition dataset of solvents densities values is also presented.

The 4 columns of this dataset are explained as follows:



Solvent — solvent name

Temperature_K — temperature for the reported density value, K

Density_g/cm^3 – the reported density value

Source — data source for given values


An additional note - the values in columns 'Solubility(mol/L)' and 'LogS(mol/L)' were recalculated from the mole fraction values reported in the source articles ('Solubility(mole_fraction)' column), using the densitites of solvents expressed in BigSolDBv2.0_densities.csv.

Online visualization and search across the dataset are available here: https://bigsoldb.streamlit.app/
DOI: 10.15468/dl.pvp56z
title: Occurrence Download

description: A dataset containing 8740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sus scrofa",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8740 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018107-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/k6.auckland.24190647.v1
title: Single-Lap Shear Tests Database on EB-FRP <i>(</i><i>Appendix for FRPRCS & ACI Special Publications)</i>

description: This meticulously curated dataset encompasses 1,627 single lap shear tests performed on externally reinforced concrete members using FRP strips or ties, spanning studies from 1994 to 2022. These studies have been diligently sourced from the Scopus and Web of Science databases to provide a cohesive and extensive overview of the developments in the field of concrete reinforcement.While material testing insights are included, they predominantly pertain to the more recent large-scale tests executed by Simpson Strong-Tie Inc. These inclusions, albeit not the central focus, do add nuanced layers to the comprehensive academic research presented.Additionally, the dataset features Paper No. 418 in FRPRCS (Fiber-Reinforced Polymer Reinforcement for Concrete Structures) and the accepted full paper is published in an ACI SP (American Concrete Institute Special Publication), supplementing the overall compilation with enriched academic viewpoints and findings.The objective of this assembled dataset is to serve as a substantial, integrated resource for academics, researchers, and industry professionals. It provides a balanced, encompassing view of the theoretical foundations and practical applications of FRP reinforcements in concrete members, enabling users to explore and understand the progressive methodologies and varied applications in the domain over the designated period.
DOI: 10.6084/m9.figshare.20282238.v3
title: GC, Patient 1, sEV, Saliva (UCLA, ERCC)

description: SERS spectral data of GC Saliva Samples
DOI: 10.6084/m9.figshare.25989073.v1
title: Restoring Vigilance in Multi-task Scenarios - Eye-tracking Data Files

description: The eye-tracking data for the attention restoration research.The blink file contains participants' blink duration and blink rate for each 1-minute period during the two 20-min sessions of MATB task.The fixation file contains participants' fixation duration and fixation rate for each 1-minute period during the two sessions of MATB task.The pupil file contains participants' average pupil size for each 1-minute period during the two sessions of MATB task.The group ID labeled from 1 to 5 corresponds to the meditation group, the nature-video group, the music group, the AVG group, and the control group, respectively.
DOI: 10.6084/m9.figshare.8937995.v1
title: Data repository Chronic bicarbonate supplementation at altitude

description: Experimental study on chronic bicarbonate supplementation at hypobaric hypoxia.
DOI: 10.6084/m9.figshare.1263501.v1
title: Laser Printer Attribution: Exploring New Features and Beyond

description: Dataset of the paper Laser Printer Attribution:<br>Exploring New Features and Beyond
DOI: 10.6084/m9.figshare.22494340.v1
title: Repeat database, LTR database and RNA annotation result for S. obscura and S. undulata

description: .cmscan and .tblout files for RNA annotation _ncRNA.txt files for non-coding mRNA annotation _repmodeler_db.fa for repeat sequences database, from RepeatModeler2 _repmasker.tbl files for base on RepeatModeler2 database RepeatMasker result
DOI: 10.6084/m9.figshare.25193021.v1
title: scd.lin_3.integrated.new.rds

description: Main object for MRV project.
DOI: 10.6084/m9.figshare.8426963.v1
title: Supplementary Material for: Validation of the German Version of the Power of Food Scale in a General Population Sample

description: <b><i>Objective:</i></b> The Power of Food Scale (PFS) is a self-report instrument for assessing appetitive motivation in the absence of caloric needs. The study aim was to validate the German PFS version in a large population sample. <b><i>Methods:</i></b> Complete information on all PFS items was available from 2,421 respondents (age ≥14) of a nationally representative sample of the German population. We examined the psychometric properties of the German PFS version and provided population-based normative data. <b><i>Results:</i></b> The 3-factor structure of the original scale was replicated in confirmatory factor analysis. The German PFS version demonstrated good internal consistency (α = 0.92 for the total scale). It was well accepted by the respondents, as indicated by a low proportion of missing item values (≤0.56%). While no significant differences were observed in the PFS mean scores between men and women, the scores increased across BMI categories. PFS was positively correlated with a measure of global eating disorder psychopathology (Eating Disorder Examination-Questionnaire 8) and the ultra-brief Patient Health Questionnaire for depression and anxiety. <b><i>Conclusions:</i></b> Our findings suggest that the German PFS version has adequate psychometric properties and good reliability for measuring hedonic hunger in the general population. The provided population-based norms can be used for individual assessment.
DOI: 10.6084/m9.figshare.28043600.v1
title: <b>Intra-bladder and Insufflation Pressure Readings During Laparoscopic Surgery (dataset)</b>

description: The raw data supporting the findings of the original article.
DOI: 10.6084/m9.figshare.12619994.v1
title: PhyloBayes_Timetree_Output.zip

description: Results of PhyloBayes divergence time estimation
DOI: 10.6084/m9.figshare.12651698.v1
title: Supplementary Material for: Rescue of Function of Mutant Luteinising Hormone Receptors with Deficiencies in Cell Surface Expression, Hormone Binding, and Hormone Signalling

description: <b><i>Introduction:</i></b> G protein-coupled receptor (GPCR) mutations are implicated in many diseases. Most inactivating mutations cause receptor misfolding and prevent trafficking to the plasma membrane. Pharmacological chaperones can “rescue” cell surface expression of such mutants, presumably by stabilising correct folding of the nascent protein. <b><i>Objective:</i></b> Here we examine the scope of intracellularly retained luteinising hormone receptor (LHR) mutants that can be “rescued” by the pharmacological chaperone LHR-Chap, and whether this allosteric agonist can also restore the function of mutant LHRs with deficiencies in hormone binding or hormone-induced signalling. <b><i>Methods:</i></b> Mutant LHRs were expressed in HEK 293-T cells. Cell surface expression/localisation, hormone binding, and hCG/LHR-Chap signalling were determined by ELISA, radioligand binding, and inositol phosphate accumulation assays, respectively. Molecular modelling predicted LHR-Chap interactions. <b><i>Results:</i></b> LHR-Chap increased cell surface expression of a subset of retained mutants located in transmembrane helices predicted to be stabilised by LHR-Chap binding. For 3 (T461<sup>3.47</sup>I, L502<sup>4.61</sup>P, and S616<sup>7.46</sup>Y) hCG-responsiveness was increased following treatment. LHRs with mutations in the hormone-binding site (C131<sup>ECD</sup>R and I152<sup>ECD</sup>T) or in the hinge region (E354<sup>Hinge</sup>K) had good cell surface expression but poor response to hormone stimulation, yet were responsive to allosteric activation by LHR-Chap.<b><i> Conclusions:</i></b> LHR-Chap, in addition to rescuing cell surface expression of intracellularly retained LHR mutants, can rescue function in mutant receptors with binding and signalling deficiencies that have normal cell surface expression. This demonstration of rescue of multiple elements of LHR dysfunction arising from inactivating mutations offers exceptional potential for treating patients with diseases arising from GPCR mutations in general.
DOI: 10.6084/m9.figshare.8986793.v1
title: RELIABILITY-BASED MULTI-OBJECTIVE OPTIMIZATION APPLIED TO CHEMICAL ENGINEERING DESIGN

description: ABSTRACT Chemical engineering optimization represents a significant challenge due to the complexity of the mathematical models that are frequently required in this area. These models are normally associated with nonlinear equations that represent mass, energy, and momentum balances, which are submitted to physical, constitutive, environmental, and design limitations. The design of chemical systems is generally carried out by considering the model, the vector of design variables, and system parameters as deterministic values, i.e., small variations in these quantities do not affect the objective function. In this contribution, a new methodology based on a double loop iteration process to evaluate the influence of uncertainties on chemical engineering design is proposed. The inner optimization loop is used to find the solution associated with the highest probability value by using the so-called Inverse Reliability Analysis and the outer loop is the regular optimization loop used to determine the vector of design variables. For this aim, the Multi-Objective Optimization Water Cycle Algorithm is improved, adopting a mechanism of neighborhood exploration. For illustration purposes, the proposed methodology is applied to mathematical functions and to chemical engineering design. The obtained results demonstrate that the proposed strategy represents an interesting alternative to reliability design in chemical engineering.
DOI: 10.6084/m9.figshare.14684361.v2
title: Customer models for artificial intelligence-based decision support in fashion online retail supply chains

description: Data and Script.
DOI: 10.6084/m9.figshare.22270087.v1
title: Supplementary Material: Climate Change Influences Brain Size in Humans

description: Abstract Brain size evolution in hominins constitutes a crucial evolutionary trend, yet the underlying mechanisms behind those changes are not well understood. Here, climate change is considered as an environmental factor using multiple paleoclimate records testing temperature, humidity, and precipitation against changes to brain size in 298 <em>Homo</em> specimens over the past fifty thousand years. Across regional and global paleoclimate records, brain size in <em>Homo</em> averaged significantly lower during periods of climate warming as compared to cooler periods. Geological epochs displayed similar patterns, with Holocene warming periods comprising significantly smaller brained individuals as compared to those living during glacial periods at the end of the Late Pleistocene. Testing spatiotemporal patterns, the adaptive response appears to have started roughly fifteen thousand years ago and may persist into modern times. To a smaller degree, humidity and precipitation levels were also predictive of brain size, with arid periods associated with greater brain size in <em>Homo</em>. The findings suggest an adaptive response to climate change in human brain size that is driven by natural selection in response to environmental stress. The Author(s). Published by S. Karger AG, Basel
DOI: 10.6084/m9.figshare.28693517.v2
title: <b>Observational Relativity: </b><b>A New Theory with New Discoveries and New Insights</b>

description: Physics has had a new theory: the theory of Observational Relativity (OR). The theory of OR has discovered that all theories or spacetime models in human being’s physics must be branded with observation. The theory of OR has uncovered the root and essence of the relativistic effects of matter motion and matter interactions presented in spacetime: all relativistic effects are observational effects and apparent phenomena -- the speed of light is not really invariant; spacetime is not really curved. Mankind must re-examine his physics and reshape his view of nature.
DOI: 10.6084/m9.figshare.9083348.v1
title: Extended data on the study titled 'Acute and sub-acute toxicity study of the root extracts of Fagaropsis hildebrandtii in mice and evaluation of their antimicrobial effects'

description: The extended data contains the following sections;<br>1. The ethical approval document from the biosafety animal use and ethics committee of the University of Nairobi<br>2. A summary of the animals used in the experiment<br>3. Data on the mean body weight of mice in the acute toxicity protocol<br>4. Data on the feed and water consumption of mice in the acute toxicity protocol (both aqueous and hexane extracts)<br>5. Data on the relative mean organ weight of mice in the acute toxicity protocol<br>6. Data on the mean body weight of mice in the sub-acute toxicity protocol (Aqueous extract)<br>7. Data on the feed and water consumption of mice in the sub-acute toxicity protocol (both aqueous and hexane extracts)<br>8. Data on the mean body weight of mice treated with the aqueous extract of F. hildebrandtii in mice in the sub-acute toxicity protocol<br><br>9. Data on the mean body weight of mice treated with the hexane extract of F. hildebrandtii in the sub-acute toxicity protocol<br>10. Data on the relative mean organ weight of mice treated with the aqueous extract of F. hildebrandtii in the sub-acute toxicity protocol<br>11. Data on the relative mean organ weight of mice treated with the hexane extracr of F. hildebrandtii in the sub-acute toxicity protocol<br>
DOI: 10.6084/m9.figshare.12461969.v1
title: Atlantic salmon (Salmo salar) 3'UTRs (untranslated regions)

description: <b>GCF_000233375.1_ICSASG_v2_3prime-UTR.fna.gz:</b>The 3' untranslated regions of the Atlantic salmon (<i>Salmo salar</i>) genome (created from GCF_000233375.1_ICSASG_v2_rna_from_genomic.fna).<br><b>utr-processing.py:</b><br>The script used to extract the 3'UTRs from the Atlantic salmon genome.
DOI: 10.6084/m9.figshare.18737189.v1
title: 42 Urine NMR spectra - Clinical analyses of total urinary protein

description: This dataset consists of 42 urine NMR spectra both noesy1D and CPMG, along with the measured total urinary protein per each urine sample (see doi.org/10.1021/acs.analchem.1c01618) <br>