cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.83bk3jb1m
title: Limited evidence for range-shift-driven extinction in mountain Biota

description: Mountain biodiversity is rapidly reorganizing as species migrate upslope
 to track climate warming. Despite the potential threats of mountaintop
 extirpation, range shift gaps, and lowland biodiversity attrition,
 empirical evidence of these risks remains scarce. We analyzed 8,800
 records of historical and modern elevational range limits for 440 animals
 and 1,629 plant species and found that the risk of mountaintop extirpation
 did not exceed random expectations. Upper limits expanded for species with
 narrow ranges or lowland affinities, but lower limits showed little
 contraction, implying scant risk to date of these threats, even in the
 tropics. Yet the predominance of upslope expansion combined with delayed
 mountaintop extirpations points to a biotic homogenization, which may
 profoundly alter biotic interactions in mountain ecosystems with
 increasing warming.
description: # Limited evidence for range-shift-driven extinction in mountain Biota
 [https://doi.org/10.5061/dryad.83bk3jb1m](https://doi.org/10.5061/dryad.83bk3jb1m) To assess range shifts of global mountain species under warming climate, we compiled 2,200 quadruplets of historic (1849-1998) and modern (2003-2017) elevational range limits, both the upper and lower limit, for a total 2069 terrestrial plant and animal species, extracted from 21 peer-reviewed studies conducted across 23 montane regions. To test the three above-listed predictions of climate-driven risks, we analyzed the four metrics by pairs of response variables: lower and upper limit shifts combined (Model 1) as well as range extent change and midpoint shift combined (Model 2). We fitted two separate Bayesian multivariate response models (Model 1 and Model 2), applying a multivariate mixed-effects modelling approach (MMMs), to estimate correlations between pairs of response variables. Model significance for the three predictions of climate-driven risks was obtained against null models. ## Description of the data and file structure **Data.csv**: This CSV file contains species range shift records 2,200 quadruplets of historic (1849-1998) and modern (2003-2017) elevational range limits for a total 2069 terrestrial plant and animal species, extracted from 21 peer-reviewed studies. **Metadata.xlsx**: This XLSX file contains metadata for Data.xlsx **Publication_list.xlsx**: This XLSX file lists the scientific reports included in the dataset. **1_MMMs.R**: This script contains the code used to conduct multivariate mixed-effects model analysis. **2_Null_model_example.R**: This script contains the code used to construct a null model by randomizing the boundary shifts with replacement among species historically at different elevational positions.
DOI: 10.5281/zenodo.18406720
title: Dataset for: "Evaluation of the operation of a PAT under real operating conditions in a DWTS"

description: Datos de funcionamiento de la ETAP con las siguientes variables: caudales, potencias, velocidad de giro del generador, presiones, estado de las válvulas de acceso de agua a la planta, temperatura del generador y estado de las resistencias de volcado.

Software para el tratamiento de los datos.
DOI: 10.5281/zenodo.18406719
title: Dataset for: "Evaluation of the operation of a PAT under real operating conditions in a DWTS"

description: Datos de funcionamiento de la ETAP con las siguientes variables: caudales, potencias, velocidad de giro del generador, presiones, estado de las válvulas de acceso de agua a la planta, temperatura del generador y estado de las resistencias de volcado.

Software para el tratamiento de los datos.
DOI: 10.6084/m9.figshare.28873598
title: fig2.tif

description: figure of CONSORT chart
DOI: 10.6084/m9.figshare.28873598.v1
title: fig2.tif

description: figure of CONSORT chart
DOI: 10.6084/m9.figshare.28873598.v2
title: fig2.tif

description: figure of CONSORT chart
DOI: 10.15139/s3/54wvnc
title: Data Management and Sharing Plan for: Improving Outcomes and Reducing Disparities for Patients with Inflammatory Bowel Disease through Epidemiology, Enhanced Disease Management, Dissemination, and Education

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.gt999z
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sardinella lemuru",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 213 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004043-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0000000bp
title: Data from: Socio-ecological context modulates significance of territorial contest competition in Drosophila prolongata

description: The intensity and direction of sexual selection is intricately linked to
 the social and ecological context. Both operational sex ratios (OSRs) and
 population densities can affect the ability of males to monopolize
 resources and mates, and thus the form and intensity of sexual selection
 on them. Here, we studied how the mating system of the promiscuous and
 strongly sexually dimorphic fruit fly Drosophila prolongata responds to
 changes in the OSR and population density. We recorded groups of flies
 over five days and quantified territory occupancy, mating success, and
 competitive fertilization success. Although sexual selection was stronger
 under male-biased than even OSRs but unrelated to density, realized
 selection on morphological traits was higher under even OSRs and increased
 with density. Larger and more territorial males achieved both higher
 mating success and competitive fertilization success, but only under even
 OSRs. Our combined results also support a shift in the mating system from
 territorial contest competition to scramble competition under male-biased
 OSRs and potentially at low density, where there was no clear contribution
 of the measured traits to reproductive success. Our study emphasizes the
 limitations of traditional selection metrics and the role of the
 socio-ecological context in predicting adaptation to a changing
 environment.
description: # Data from: Socio-ecological context modulates significance of
 territorial contest competition in Drosophila prolongata
 [https://doi.org/10.5061/dryad.0000000bp](https://doi.org/10.5061/dryad.0000000bp) ## Description of the data and file structure This is the data set on which the article "Socio-ecological context modulates significance of territorial contest competition in *Drosophila prolongata*" is based on. ### Files and variables #### File: R\_code\_ProcB.R **Description:** R code used to analyse the data #### File: clean\_data.xlsx **Description:** data set  ##### Variables * the variables that are not self-explanatory are explained in the second sheet of the data file * empty cells are data points that are not available due to either missingness (e.g., measurement not possible) or not being applicable (e.g., data on fertilization success for females is not applicable).  ## Code/software the R code for the analysis was uploaded alongside the data ## Access information Other publicly accessible locations of the data: * none Data was derived from the following sources: * experimental lab data
DOI: 10.5281/zenodo.18406638
title: ESENTAI CITY Project (Kazakhstan): Factual Chronology and Analytical Reconstruction of Corporate and De Facto Control

description: This publication presents an analytical master dossier documenting the factual background, chronology of key events, and structural changes in corporate and de facto control related to the ESENTAI CITY investment and construction project in Almaty, Republic of Kazakhstan, implemented through AV-Construction LLP.

The dossier provides a structured reconstruction of governance transformations, redistribution of control over assets and financial flows, and the roles of key participants, based on the aggregate of available factual circumstances. Particular attention is given to the development of contractual obligations, asset encumbrances, and the emergence of a transnational dimension involving interests of the United States of America.

The document adopts an institutionally neutral and non-procedural approach. It does not provide legal qualification of actions, does not assess intent or motivation, and does not establish legal responsibility. The analysis is intended as a base analytical file for further institutional, regulatory, academic, or policy-oriented work.
DOI: 10.5281/zenodo.18406639
title: ESENTAI CITY Project (Kazakhstan): Factual Chronology and Analytical Reconstruction of Corporate and De Facto Control

description: This publication presents an analytical master dossier documenting the factual background, chronology of key events, and structural changes in corporate and de facto control related to the ESENTAI CITY investment and construction project in Almaty, Republic of Kazakhstan, implemented through AV-Construction LLP.

The dossier provides a structured reconstruction of governance transformations, redistribution of control over assets and financial flows, and the roles of key participants, based on the aggregate of available factual circumstances. Particular attention is given to the development of contractual obligations, asset encumbrances, and the emergence of a transnational dimension involving interests of the United States of America.

The document adopts an institutionally neutral and non-procedural approach. It does not provide legal qualification of actions, does not assess intent or motivation, and does not establish legal responsibility. The analysis is intended as a base analytical file for further institutional, regulatory, academic, or policy-oriented work.
DOI: 10.15468/dl.84sdze
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004044-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.p8cz8wb00
title: Data from: Low genetic diversity and complex population structure in black piranha (Serrasalmus rhombeus), a key Amazonian predator

description: This dataset contains 29,587 SNPs from 248 black piranha (Serrasalmus
 rhombeus) samples collected across 14 study sites from various tributaries
 in the central Amazonia, covering diverse water types (black, white, and
 clear water). The SNPs were obtained using a Genotyping-by-Sequencing
 approach. Additionally, we have included a file with spatio-temporal
 information about the samples collected and the A00 analyses outputs from
 the Bayesian Phylogenetics and Phylogeography (BPP) software.
description: A total of 248 individuals of <em>S. rhombeus
 </em>were collected in the Amazon Basin (Amazonas and Pará states,
 Brazil) in 2018 and 2019 during the dry season at 14 sites in different
 Amazon River tributaries, including seven white water, four black water
 and three clear water sites. Fin clip samples were collected and
 immediately preserved in nucleic acid preservation (NAP) buffer to
 preserve maximum DNA integrity. The samples were then stored at -20°C. We
 then applied a Genotyping-By-Sequencing (GBS) approach to identify and
 analyze single nucleotide polymorphisms (SNPs). 
description: # Data from: Low genetic diversity and complex population structure in
 black piranha (Serrasalmus rhombeus), a key Amazonian predator
 [https://doi.org/10.5061/dryad.p8cz8wb00](https://doi.org/10.5061/dryad.p8cz8wb00) ## Description of the data and file structure Data preparation, genotyping and filtration were processed using STACKS v2.62 ([https://catchenlab.life.illinois.edu/stacks/](https://catchenlab.life.illinois.edu/stacks/)) and stacks_workflow v2.62 ([https://github.com/enormandeau/stacks_workflow](https://github.com/enormandeau/stacks_workflow)). ### Files and variables #### File: Metadata\_BlackPiranha\_Thomas.xls **Description:** This file contains spatio-temporal information about the *Serrasalmus rhombeus* samples collected. ##### Variables * Country (Country where the samples were collected) * Locality (Site where the samples were collected * SampleID (The ID of every individuals) * YearCollected (The year in which the samples were collected) #### File: SNPs\_Black\_Piranha.fasta This file contains the SNPs for each individual. #### File: A00\_results This zip file contains the theta and tau values generated from the A00 analyses conducted at each tree level, with triplicates for each tree.
DOI: 10.82294/dvn1oc7dz
title: Entrevistas semiestructuradas - Grupo Focal. Territorio: Cundinamarca. Sector: Cultura, Educación. Año: 2023

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios mediante un grupo focal realizado durante el año 2023, con el propósito de indagar sobre los aprendizajes que emergieron al reunirse para discutir elementos de las planeaciones de clase en el marco de la estrategia de Aulas Grupales. Este grupo focal exploró cuatro categorías que permitieron describir la práctica en educación artística de docentes, cultores y sabedores vinculados a programas de formación en educación artística y cultural del sector Cultura (educación informal) y del sector Educación (educación formal) en el departamento de Cundinamarca.
DOI: 10.5281/zenodo.18406544
title: MATCH: Mapping Axis Transparency and Continuity cHeck — A Minimal Numeric Probe for Contextual Inertia in Large Language Models
title: MATCH: 大規模言語モデルにおける文脈的慣性を観察するための最小数値プローブ

description: MATCH (Mapping Axis Transparency and Continuity cHeck) is a minimal, reproducible probe for observing contextual inertia in Large Language Models (LLMs).

This protocol introduces the concept of a "Mapping Axis" — a latent interpretive framework that an LLM implicitly activates when processing sequential inputs. When an LLM continues to interpret new inputs using a previously activated axis, this phenomenon is termed "Mapping Axis Continuity" or "Contextual Inertia."

MATCH uses only numerical inputs to observe these behaviors, providing a language-agnostic, reproducible protocol for studying LLM interpretive behavior.

This is a probe, not a benchmark. It is not intended for ranking or evaluating model performance.

## Files included

### PDF (Recommended)- MATCH_v1.0_EN.pdf — Full documentation (English)- MATCH_v1.0_JP.pdf — Full documentation (Japanese)

### Markdown- MATCH_README.md — Full documentation (English)- MATCH_README_JP.md — Full documentation (Japanese)- MATCH_protocol.md — Input sequence only (English)- MATCH_protocol_JP.md — Input sequence only (Japanese)

## KeywordsLLM, Large Language Model, Context, Attention, Mapping Axis, Contextual Inertia, Reproducibility, Probe
description: MATCH(Mapping Axis Transparency and Continuity cHeck)は、大規模言語モデル(LLM)における文脈的慣性を観察するための最小限で再現可能なプローブです。

本プロトコルは「写像軸(Mapping Axis)」という概念を導入します。これは、LLMが連続的な入力を処理する際に暗黙的に活性化する潜在的な解釈フレームワークです。LLMが以前に活性化した軸を使用して新しい入力を解釈し続ける現象を「写像軸の継続性」または「文脈的慣性」と呼びます。

MATCHは数値入力のみを使用してこれらの挙動を観察し、言語に依存しない再現可能なプロトコルを提供します。

これはプローブであり、ベンチマークではありません。モデルの性能をランキングしたり評価したりすることを意図していません。

---

## Files included / ファイル一覧

### PDF (Recommended / 推奨)- MATCH_v1.0_EN.pdf — Full documentation (English)- MATCH_v1.0_JP.pdf — 完全版ドキュメント(日本語)

### Markdown- MATCH_README.md — Full documentation (English)- MATCH_README_JP.md — 完全版ドキュメント(日本語)- MATCH_protocol.md — Input sequence only (English)- MATCH_protocol_JP.md — 入力シーケンスのみ(日本語)

## KeywordsLLM, Large Language Model, Context, Attention, Mapping Axis, Contextual Inertia, Reproducibility, Probe, 写像軸, 文脈的慣性
DOI: 10.5061/dryad.xpnvx0kq3
title: Dipsacales four locus supermatrix assembled with PyNCBIminer

description: PyNCBIminer is a user-friendly software that automates the assembly of
 large DNA datasets from GenBank for phylogenetic reconstruction using the
 supermatrix method.To evaluate the sensitivity of PyNCBIminer to initial
 queries, we downloaded four DNA markers (ITS, matK, rbcL and
 trnLintron-trnF) of Dipsacales using two distinct initial query sets. The
 experiments were performed on a personal computer featuring a 13th Gen
 Intel(R) Core (TM) i5-1340P 1.90 GHz processor and 32.0 GB of RAM. Run 1
 used six well-aligned sequences from six angiosperm orders as default
 initial queries in PyNCBIminer, while Run 2 used six sequences from six
 genera within the order Dipsacales.
description: # Dipsacales four locus supermatrix assembled with PyNCBIminer
 [https://doi.org/10.5061/dryad.xpnvx0kq3](https://doi.org/10.5061/dryad.xpnvx0kq3) ## Description of the data and file structure To evaluate the sensitivity of PyNCBIminer to initial queries, we downloaded four DNA markers (ITS, matK, rbcL and trnLintron-trnF) of Dipsacales using two distinct initial query sets. The experiments were performed on a personal computer featuring a 13th Gen Intel(R) Core (TM) i5-1340P 1.90 GHz processor and 32.0 GB of RAM. Run 1 used six well-aligned sequences from six angiosperm orders as default initial queries in PyNCBIminer, while Run 2 used six sequences from six genera within the order Dipsacales. The zip file contained two folders for Run 1 and Run 2, which each contained the following sub directories or files: \#original blast results for each maker named by the marker name, including  *ITS, matK, rbcL, and trnL-trnF* are directly produced by the "Sequence Retrieving" module in PyNCBIminer. \#the following directories or files are the results generated in "Supermatrix Module" of PyNCBIminer. *01_filtered_seqs*: the species-level sequences data produced by "Sequences filtering" function. *02_msa*: the alignments for each marker's species-level sequences, produced by "Sequences alignment" function. *03_msa_trimmed*: the alignments matrix after trimming, generated by "Alignments trimming" function. *04_supermatrix*: the supermatrix produced by concatenating each trimmed alignment matrix, produced by the "Alignments concatenation" function. *combined_records.txt*: the accession numbers of all the sequences combined in the supermatrix. ## Sharing/Access information Data was derived from the following sources: * [GenBank Overview (nih.gov)](https://www.ncbi.nlm.nih.gov/genbank/) ## Code/Software Source code, software executables and manuals deposited in Github ([https://github.com/Xiaoting-Xu/PyNCBIminer](https://github.com/Xiaoting-Xu/PyNCBIminer)) and Gitee ([https://gitee.com/xiaotingxu/PyNCBIminer](https://gitee.com/xiaotingxu/PyNCBIminer)).
DOI: 10.15468/dl.4j8aef
title: Occurrence Download

description: A dataset containing 2944 records in GBIF matching the query:
SELECT
 '491' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 119.59356374412798
 AND decimalLongitude &lt;= 133.62876032781878
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 2944 records were derived from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004026-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17172/nomad/2026.01.28-3
title: NOMAD dataset: Jaká je struktura titanových vakancí v karbidu titanu? - DFT data
DOI: 10.15468/75ruy7
title: Description of a new bathyal species of Notocomplana (Platyhelminthes, Polycladida) collected from Bathymodiolus aggregations in a deep-sea hydrocarbon seep

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oya, Yuki, Hookabe, Natsumi, Jimi, Naoto, Furushima, Yasuo, Fujiwara, Yoshihiro (2025): Description of a new bathyal species of Notocomplana (Platyhelminthes, Polycladida) collected from Bathymodiolus aggregations in a deep-sea hydrocarbon seep. Zootaxa 5722 (2): 265-277, DOI: 10.11646/zootaxa.5722.2.6, URL: https://doi.org/10.11646/zootaxa.5722.2.6AbstractPolyclad flatworms are free-living platyhelminths that inhabit various marine environments; however, their biodiversity in the deep sea remains poorly understood. Herein, we describe a new species of Notocomplana Faubel, 1983, Notocomplana profunda sp. nov., based on specimens collected from Bathymodiolus mussel aggregations in a deep-sea hydrocarbon seep off Hatsushima, Japan. This is the first report of a bathyal species of Notocomplana, which is dominated by shallow-water species. The new species is characterized by the absence of tentacles, eyespots, and any color pattern on the dorsal surface of the body and the presence of a seminal vesicle larger than a prostatic vesicle and a long, tubular Lang’s vesicle. A molecular phylogenetic analysis based on the partial sequences of two mitochondrial and two nuclear genes suggested that the strategy of N. profunda sp. nov. to use mussel aggregations was acquired by its shallow coastal ancestors.