cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7454078
title: CXDI_ESRF_Emili_huxleyi_RCC1212_NoCorr_fig1CS7B_uint8_244_320_288_32_5

description: This file contains the tomographic slice images of the coccosphere from the <i>Emiliania huxleyi </i>RCC1212 species. The data is obtained from 3D Coherent X-ray Diffraction Imaging (3D-CXDI) at ESRF on ID10. After the reconstruction, no correction (no Gaussian subtraction) was applied. Each image has a size of 244 by 320. The intensity is coded in 8 bits (uint8). There are 288 images. The voxel size is 32.5 x 32.5 x 32.5 nm<sup>3</sup>. The data is used in the figures 1C and S7 of the article of T. Beuvier et al, Nat. Commun. (2019) (DOI: 10.1038/s41467-019-08635-x).
DOI: 10.7284/104954
title: Multibeam Echosounder data collected during research cruise MGLN37MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7454072
title: CXDI_ESRF_Emili_huxleyi_P41_NoCorr_fig1C_uint8_193_218_206_28_8

description: This file contains the tomographic slice images of the coccosphere from the <i>Emiliania huxleyi </i>P41 species. The data is obtained from 3D Coherent X-ray Diffraction Imaging (3D-CXDI) at ESRF on ID10. After the reconstruction, no correction (no Gaussian subtraction) was applied. Each image has a size of 193 by 218. The intensity is coded in 8 bits (uint8). There are 206 images. The voxel size is 28.8 x 28.8 x 28.8 nm<sup>3</sup>. The data is used in the figure 1C of the article of T. Beuvier et al, Nat. Commun. (2019) (DOI: 10.1038/s41467-019-08635-x).
DOI: 10.6084/m9.figshare.7454078.v1
title: CXDI_ESRF_Emili_huxleyi_RCC1212_NoCorr_fig1CS7B_uint8_244_320_288_32_5

description: This file contains the tomographic slice images of the coccosphere from the <i>Emiliania huxleyi </i>RCC1212 species. The data is obtained from 3D Coherent X-ray Diffraction Imaging (3D-CXDI) at ESRF on ID10. After the reconstruction, no correction (no Gaussian subtraction) was applied. Each image has a size of 244 by 320. The intensity is coded in 8 bits (uint8). There are 288 images. The voxel size is 32.5 x 32.5 x 32.5 nm<sup>3</sup>. The data is used in the figures 1C and S7 of the article of T. Beuvier et al, Nat. Commun. (2019) (DOI: 10.1038/s41467-019-08635-x).
DOI: 10.7284/104962
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN38MV using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104959
title: Expendable Probe data collected during research cruise MGLN38MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104957
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN38MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104958
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN38MV using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104964
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN38MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104960
title: Gravimeter data collected during research cruise MGLN38MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7454015
title: data for manuscript 'Large scale characteristics of flux transfer events on the dayside magnetopause'

description: The uploaded data is the MHD simulation result for the case studied in the manuscritpt. The data format is binary. The magnetic field at the Earth's magnetopause along the normal direction is projected to the GSM-YZ plane.
DOI: 10.6084/m9.figshare.7454015.v1
title: data for manuscript 'Large scale characteristics of flux transfer events on the dayside magnetopause'

description: The uploaded data is the MHD simulation result for the case studied in the manuscritpt. The data format is binary. The magnetic field at the Earth's magnetopause along the normal direction is projected to the GSM-YZ plane.
DOI: 10.7284/104963
title: Meteorological Station data collected during research cruise MGLN38MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104961
title: Multibeam Echosounder data collected during research cruise MGLN38MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104970
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN39MV using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104967
title: Expendable Probe data collected during research cruise MGLN39MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104965
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN39MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104966
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN39MV using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104972
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN39MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104968
title: Gravimeter data collected during research cruise MGLN39MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104971
title: Meteorological Station data collected during research cruise MGLN39MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104969
title: Multibeam Echosounder data collected during research cruise MGLN39MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105044
title: Multibeam Echosounder data collected during research cruise MGLN40MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453892
title: Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

description: Complete list of genes considered in the development of the tissue cross-talk networks between mammary fat pad and parenchyma. (XLSX 37 kb)
DOI: 10.7284/104977
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN44MV using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453892.v1
title: Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

description: Complete list of genes considered in the development of the tissue cross-talk networks between mammary fat pad and parenchyma. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7453883
title: Additional file 3: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

description: Complete result datasets generated by the DIA analysis. The KEGG pathways are sorted by category and subcategory. Blue bars represent the Impact along the transition period, while red and green bars show the Direction of the Impact (red = upregulation, green = downregulation). (XLSX 60 kb)
DOI: 10.7284/104975
title: Expendable Probe data collected during research cruise MGLN44MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453883.v1
title: Additional file 3: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

description: Complete result datasets generated by the DIA analysis. The KEGG pathways are sorted by category and subcategory. Blue bars represent the Impact along the transition period, while red and green bars show the Direction of the Impact (red = upregulation, green = downregulation). (XLSX 60 kb)
DOI: 10.7284/104973
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN44MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453877
title: Additional file 4: of A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism

description: Genome scale metabolic network reconstruction of S. tuberosum in xls format. (XLSX 161 kb)
DOI: 10.6084/m9.figshare.7453877.v1
title: Additional file 4: of A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism

description: Genome scale metabolic network reconstruction of S. tuberosum in xls format. (XLSX 161 kb)
DOI: 10.7284/104974
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN44MV using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453859
title: Additional file 2: of A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism

description: Genome scale metabolic model of S. tuberosum in SBML format. (XML 2677 kb)
DOI: 10.6084/m9.figshare.7453862
title: MOESM2 of Altered Slc25 family gene expression as markers of mitochondrial dysfunction in brain regions under experimental mixed anxiety/depression-like disorder

description: Additional file 2: Table S1. FPKM values for Slc25a* transcripts analyzed in the study. Table S2. Correlation matrix [Pearson (nâ â â 1)] across 45 samples (all regions) between FPKM of differentially expressed Mrp* and Slc25a* genes.
DOI: 10.6084/m9.figshare.7453862.v1
title: MOESM2 of Altered Slc25 family gene expression as markers of mitochondrial dysfunction in brain regions under experimental mixed anxiety/depression-like disorder

description: Additional file 2: Table S1. FPKM values for Slc25a* transcripts analyzed in the study. Table S2. Correlation matrix [Pearson (nâ â â 1)] across 45 samples (all regions) between FPKM of differentially expressed Mrp* and Slc25a* genes.
DOI: 10.7284/104980
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN44MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453859.v1
title: Additional file 2: of A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism

description: Genome scale metabolic model of S. tuberosum in SBML format. (XML 2677 kb)
DOI: 10.7284/104976
title: Gravimeter data collected during research cruise MGLN44MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453847
title: Additional file 3: of BASILIScan: a tool for high-throughput analysis of intrinsic disorder patterns in homologous proteins

description: Data used to generate Fig. 4. Summary of the BASILIScan search with all human protein sequences available from UniprotKB/Swissprot against the UniprotKB/Swissprot repository. (CSV 1418 kb)
DOI: 10.6084/m9.figshare.7453847.v1
title: Additional file 3: of BASILIScan: a tool for high-throughput analysis of intrinsic disorder patterns in homologous proteins

description: Data used to generate Fig. 4. Summary of the BASILIScan search with all human protein sequences available from UniprotKB/Swissprot against the UniprotKB/Swissprot repository. (CSV 1418 kb)
DOI: 10.7284/104979
title: Meteorological Station data collected during research cruise MGLN44MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453838
title: Additional file 2: of BASILIScan: a tool for high-throughput analysis of intrinsic disorder patterns in homologous proteins

description: BASILIScan search with human CDC7 kinase (Uniprot ID: O00311) against all vertebrate sequences available from UniprotKB (both Swissprot and TrEMBL). (CSV 263 kb)
DOI: 10.6084/m9.figshare.7453838.v1
title: Additional file 2: of BASILIScan: a tool for high-throughput analysis of intrinsic disorder patterns in homologous proteins

description: BASILIScan search with human CDC7 kinase (Uniprot ID: O00311) against all vertebrate sequences available from UniprotKB (both Swissprot and TrEMBL). (CSV 263 kb)
DOI: 10.7284/104594
title: Multibeam Echosounder data collected during research cruise MGLN44MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104978
title: Singlebeam Echosounder data collected during research cruise MGLN44MV using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104997
title: Singlebeam Echosounder data collected during research cruise MGLN44MV using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104904
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN45MV using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104901
title: Expendable Probe data collected during research cruise MGLN45MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104899
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN45MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104900
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN45MV using a Trimble NT-200D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453769
title: Additional file 7: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S5. Beta factors assigned by regression analysis to each of the top-100 survival marker genes. These genes are taken as variables within the multivariate Kaplan-Meier survival analysis included in Fig. 4b. The factors allowed the identification of the genes that were the most influential variables in this risk analysis (i.e. the higher the better) and therefore facilitate an additional evaluation of each survival marker gene. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.7453769.v1
title: Additional file 7: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S5. Beta factors assigned by regression analysis to each of the top-100 survival marker genes. These genes are taken as variables within the multivariate Kaplan-Meier survival analysis included in Fig. 4b. The factors allowed the identification of the genes that were the most influential variables in this risk analysis (i.e. the higher the better) and therefore facilitate an additional evaluation of each survival marker gene. (XLSX 62 kb)
DOI: 10.7284/104908
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN45MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104902
title: Gravimeter data collected during research cruise MGLN45MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104907
title: Meteorological Station data collected during research cruise MGLN45MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453745
title: Additional file 4: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S4. Validation of the survival data done in an independent set of samples taken from The Cancer Genome Atlas (TCGA), that included 269 colorectal carcinomas with survival information and RNA-seq global expression profiling. The table includes the KM p-values and HR of the genes that were validated from the top-10 survival marker genes previously found presented in Table 3. Of the top-10 for the case of up-regulation associated with poor survival, 7 were validated (PTPN14, LAMP5, TM4SF1, LCA5, CSGALNACT2, SLC2A3 and GADD45B). Of the top-10 found for down-regulation associated with poor survival, 6 genes were validated (EPHB2, DUS1L, NUAK2, FANCC, MYB and CHDH). (XLSX 51 kb)
DOI: 10.6084/m9.figshare.7453745.v1
title: Additional file 4: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S4. Validation of the survival data done in an independent set of samples taken from The Cancer Genome Atlas (TCGA), that included 269 colorectal carcinomas with survival information and RNA-seq global expression profiling. The table includes the KM p-values and HR of the genes that were validated from the top-10 survival marker genes previously found presented in Table 3. Of the top-10 for the case of up-regulation associated with poor survival, 7 were validated (PTPN14, LAMP5, TM4SF1, LCA5, CSGALNACT2, SLC2A3 and GADD45B). Of the top-10 found for down-regulation associated with poor survival, 6 genes were validated (EPHB2, DUS1L, NUAK2, FANCC, MYB and CHDH). (XLSX 51 kb)
DOI: 10.7284/104903
title: Multibeam Echosounder data collected during research cruise MGLN45MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453739
title: Additional file 3: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S3. Top-100 best survival marker genes for colorectal cancer (CRC) that are down-regulated when survival is poor and the risk is higher (i.e., HR
DOI: 10.7284/104906
title: Singlebeam Echosounder data collected during research cruise MGLN45MV using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7453724
title: Additional file 1: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S1. Phenotypic and clinical information about the collection of 1273 colorectal cancer samples that has been integrated in this work. The table includes the IDs of the samples in GEO and all the available data about age, gender, survival time, location of the tumor, degree and TNM staging, presence of mutation in some cancer genes (TP53, KRAS, BRAF), etc. When information was not available for a given sample the table includes NA (not available values). (XLSX 272 kb)
DOI: 10.6084/m9.figshare.7453730
title: Additional file 2: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S2. Top-100 best survival marker genes for colorectal cancer (CRC) that are up-regulated when survival is poor and the risk is higher (i.e., HR &gt; 1). This table is an expension of the data in Table 3. The genes were ranked by their KM adjusted p-values and the HR values calculated for the whole dataset (i.e. for all the 1273 samples = all-dt). The stability of each survival marker gene was assessed by cross-validation (100 iterations). The table also includes the number of times that a survival marker was significant in the iterations (N-sinf-in-100i). (XLSX 73 kb)
DOI: 10.6084/m9.figshare.7453739.v1
title: Additional file 3: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S3. Top-100 best survival marker genes for colorectal cancer (CRC) that are down-regulated when survival is poor and the risk is higher (i.e., HR
DOI: 10.6084/m9.figshare.7453724.v1
title: Additional file 1: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S1. Phenotypic and clinical information about the collection of 1273 colorectal cancer samples that has been integrated in this work. The table includes the IDs of the samples in GEO and all the available data about age, gender, survival time, location of the tumor, degree and TNM staging, presence of mutation in some cancer genes (TP53, KRAS, BRAF), etc. When information was not available for a given sample the table includes NA (not available values). (XLSX 272 kb)
DOI: 10.6084/m9.figshare.7453730.v1
title: Additional file 2: of Survival marker genes of colorectal cancer derived from consistent transcriptomic profiling

description: Table S2. Top-100 best survival marker genes for colorectal cancer (CRC) that are up-regulated when survival is poor and the risk is higher (i.e., HR &gt; 1). This table is an expension of the data in Table 3. The genes were ranked by their KM adjusted p-values and the HR values calculated for the whole dataset (i.e. for all the 1273 samples = all-dt). The stability of each survival marker gene was assessed by cross-validation (100 iterations). The table also includes the number of times that a survival marker was significant in the iterations (N-sinf-in-100i). (XLSX 73 kb)
DOI: 10.7284/105401
title: Singlebeam Echosounder data collected during research cruise MGLN45MV using a Knudsen 320B/R instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105037
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN46MV using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition