cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3885205_d1.v1
title: Additional file 1: of Evaluating a preoperative protocol that includes magnetic resonance imaging for lymph node metastasis in the Cholangiocarcinoma Screening and Care Program (CASCAP) in Thailand

description: Dataset 1. (CSV 16Â kb)
DOI: 10.6084/m9.figshare.c.3885196_d2
title: Additional file 2: of Volcanic fatalities database: analysis of volcanic threat with distance and victim classification

description: KML file for use in Google Earth with the locations of fatal incidents. (KML 205 kb)
DOI: 10.6084/m9.figshare.c.3885205_d2.v1
title: Additional file 2: of Evaluating a preoperative protocol that includes magnetic resonance imaging for lymph node metastasis in the Cholangiocarcinoma Screening and Care Program (CASCAP) in Thailand

description: Dataset 2. (CSV 22Â kb)
DOI: 10.6084/m9.figshare.c.3885205_d1
title: Additional file 1: of Evaluating a preoperative protocol that includes magnetic resonance imaging for lymph node metastasis in the Cholangiocarcinoma Screening and Care Program (CASCAP) in Thailand

description: Dataset 1. (CSV 16Â kb)
DOI: 10.6084/m9.figshare.c.3885205_d2
title: Additional file 2: of Evaluating a preoperative protocol that includes magnetic resonance imaging for lymph node metastasis in the Cholangiocarcinoma Screening and Care Program (CASCAP) in Thailand

description: Dataset 2. (CSV 22Â kb)
DOI: 10.6084/m9.figshare.c.3885205_d3.v1
title: Additional file 3: of Evaluating a preoperative protocol that includes magnetic resonance imaging for lymph node metastasis in the Cholangiocarcinoma Screening and Care Program (CASCAP) in Thailand

description: Dataset 3. (CSV 52Â kb)
DOI: 10.15468/dl.pdqxws
title: Occurrence Download

description: A dataset containing 3349 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Donax trunculus Linnaeus, 1758"
 ]
}

 The dataset includes 3349 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039383-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3886501_d2
title: Additional file 2: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: The NACA scale; a severity scoring used by the Norwegian Air Ambulance Service. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3886501_d3.v1
title: Additional file 3: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in acute myocardial infarction. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886522_d1.v1
title: Additional file 10: of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Name to taxonomy ID conversion tables for tools that do not report taxonomy IDs. (ZIP 220 kb)
DOI: 10.15468/dl.fm3dej
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma macrodactylum columbianum Ferguson, 1961)"
 ]
}

 The dataset includes 267 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039384-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3886501_d3
title: Additional file 3: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in acute myocardial infarction. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886501_d4.v1
title: Additional file 4: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in stroke. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886522_d1
title: Additional file 10: of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Name to taxonomy ID conversion tables for tools that do not report taxonomy IDs. (ZIP 220 kb)
DOI: 10.6084/m9.figshare.c.3886501_d4
title: Additional file 4: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in stroke. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886525_d1.v1
title: Additional file 1: of Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns

description: Algorithm of the method (training dataset available in additional file 2). (R 13 kb)
DOI: 10.6084/m9.figshare.c.3886525_d2.v1
title: Additional file 2: of Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns

description: Training dataset for one tagged seabass. (CSV 2933 kb)
DOI: 10.6084/m9.figshare.c.3886501_d5.v1
title: Additional file 5: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in head injuries. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886525_d1
title: Additional file 1: of Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns

description: Algorithm of the method (training dataset available in additional file 2). (R 13 kb)
DOI: 10.6084/m9.figshare.c.3886525_d2
title: Additional file 2: of Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns

description: Training dataset for one tagged seabass. (CSV 2933 kb)
DOI: 10.6084/m9.figshare.c.3886522_d2.v1
title: Additional file 1: Table S1. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Comparison of tools by classification strategies and associated databases. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3886501_d5
title: Additional file 5: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (linear mixed effect model) in head injuries. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886522_d2
title: Additional file 1: Table S1. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Comparison of tools by classification strategies and associated databases. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3886501_d6.v1
title: Additional file 6: of Factors influencing on-scene time in a rural Norwegian helicopter emergency medical service: a retrospective observational study

description: Factors affecting on-scene time (simple linear model) in penetrating torso injuries. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3886522_d3.v1
title: Additional file 2: Table S2. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Features of datasets included in the analysis. Mean AUPR across tools provides an indication of the difficulty of a dataset. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3886522_d8
title: Additional file 7: Table S5. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Negative control results across tools for sequencing blanks with human DNA spiked in and simulated data constructed from nullomers (17-mers that do not map to any reference). (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3886522_d8.v1
title: Additional file 7: Table S5. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: Negative control results across tools for sequencing blanks with human DNA spiked in and simulated data constructed from nullomers (17-mers that do not map to any reference). (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3886522_d9.v1
title: Additional file 8: Table S6. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: The read counts and relative abundances for Bacillus anthracis identified by various tools after the whole genome sequencing of two samples from the New York City subway system. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3886555_d1
title: MOESM10 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 10. Hierarchical clustering of genes in the plant cell wall degradation network (PCWDN) of N. crassa based on RNA-seq data obtained in nine different conditions. The first sheet lists the different clusters in the same order as shown in Fig.Â 5.
DOI: 10.6084/m9.figshare.c.3886555_d1.v1
title: MOESM10 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 10. Hierarchical clustering of genes in the plant cell wall degradation network (PCWDN) of N. crassa based on RNA-seq data obtained in nine different conditions. The first sheet lists the different clusters in the same order as shown in Fig.Â 5.
DOI: 10.6084/m9.figshare.c.3886522_d9
title: Additional file 8: Table S6. of Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

description: The read counts and relative abundances for Bacillus anthracis identified by various tools after the whole genome sequencing of two samples from the New York City subway system. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3886549_d2.v1
title: Additional file 2 of DESMAN: a new tool for de novo extraction of strains from metagenomes

description: Separate text file containing variant prediction results in the complex mock. (TSV 4 kb)
DOI: 10.6084/m9.figshare.c.3886549_d2
title: Additional file 2 of DESMAN: a new tool for de novo extraction of strains from metagenomes

description: Separate text file containing variant prediction results in the complex mock. (TSV 4 kb)
DOI: 10.6084/m9.figshare.c.3886555_d3.v1
title: MOESM12 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 12. Comparative analysis of the plant cell wall degradation network (PCWDN) with the genome-scale metabolic models of N. crassa and other filamentous fungi. The first and second sheets compare the list of reactions and genes, respectively, in the PCWDN and genome-scale metabolic model iJDZ836 of N. crassa. The third sheet gives the occurrence of orthologs or paralogs of N. crassa PCWDN genes in genome-scale metabolic models of other filamentous fungi.
DOI: 10.6084/m9.figshare.c.3886555_d3
title: MOESM12 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 12. Comparative analysis of the plant cell wall degradation network (PCWDN) with the genome-scale metabolic models of N. crassa and other filamentous fungi. The first and second sheets compare the list of reactions and genes, respectively, in the PCWDN and genome-scale metabolic model iJDZ836 of N. crassa. The third sheet gives the occurrence of orthologs or paralogs of N. crassa PCWDN genes in genome-scale metabolic models of other filamentous fungi.
DOI: 10.6084/m9.figshare.c.3886555_d4.v1
title: MOESM1 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 1. List of reactions, compounds and genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first, second and third sheets contain the list of reactions, genes and compounds, respectively, in the PCWDN. The fourth sheet gives the participation of the PCWDN genes in the cellulose, hemicellulose, pectin and starch degradation pathways. The fifth and sixth sheets contain the feature matrix and annotation confidence scores, respectively, for genes in the PCWDN of N. crassa based on functional genomics, transcriptomics, proteomics and genetics data as well as biochemical characterizations. The seventh sheet contains a list of research articles utilized to reconstruct the PCWDN. The eighth sheet contains information on the structural units comprising the backbone and side chains of different plant cell wall polysaccharides such as cellulose, xylan, xyloglucan, mannan, galactomannan, glucomannan, galactoglucomannan, mixed-linkage glucan, homogalacturonan, xylogalacturonan, rhamnogalacturonan I, amylose and amylopectin. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.
DOI: 10.6084/m9.figshare.c.3886549_d3
title: Additional file 3 of DESMAN: a new tool for de novo extraction of strains from metagenomes

description: Separate text file containing strains used in the complex mock. (TSV 12 kb)
DOI: 10.6084/m9.figshare.c.3886549_d3.v1
title: Additional file 3 of DESMAN: a new tool for de novo extraction of strains from metagenomes

description: Separate text file containing strains used in the complex mock. (TSV 12 kb)
DOI: 10.6084/m9.figshare.c.3886555_d4
title: MOESM1 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 1. List of reactions, compounds and genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first, second and third sheets contain the list of reactions, genes and compounds, respectively, in the PCWDN. The fourth sheet gives the participation of the PCWDN genes in the cellulose, hemicellulose, pectin and starch degradation pathways. The fifth and sixth sheets contain the feature matrix and annotation confidence scores, respectively, for genes in the PCWDN of N. crassa based on functional genomics, transcriptomics, proteomics and genetics data as well as biochemical characterizations. The seventh sheet contains a list of research articles utilized to reconstruct the PCWDN. The eighth sheet contains information on the structural units comprising the backbone and side chains of different plant cell wall polysaccharides such as cellulose, xylan, xyloglucan, mannan, galactomannan, glucomannan, galactoglucomannan, mixed-linkage glucan, homogalacturonan, xylogalacturonan, rhamnogalacturonan I, amylose and amylopectin. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.
DOI: 10.6084/m9.figshare.c.3886561_d1.v1
title: Additional file 1: of An epigenome-wide association study in whole blood of measures of adiposity among Ghanaians: the RODAM study

description: Additional methods, quality control, sensitivity analyses and supplementary results. (ZIP 1243Â kb)
DOI: 10.6084/m9.figshare.c.3886555_d5.v1
title: MOESM2 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 2. List of predicted genes coding for carbohydrate-active enzymes (CAZY) in N. crassa and the plant cell wall degradation network (PCWDN). List of CAZY genes in N. crassa was obtained from two sources: CAZY database [41] and the N. crassa e-Compendium [42]. The first sheet contains the consensus list of predicted CAZY genes in N. crassa. The second sheet contains the list of predicted CAZY genes in N. crassa from CAZY database. The third sheet contains the list of predicted glycoside hydrolase (GH) genes in N. crassa from e-Compendium [42]. The fourth sheet contains the list of CAZY classes known to be involved in native cell wall remodelling. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.
DOI: 10.6084/m9.figshare.c.3886561_d1
title: Additional file 1: of An epigenome-wide association study in whole blood of measures of adiposity among Ghanaians: the RODAM study

description: Additional methods, quality control, sensitivity analyses and supplementary results. (ZIP 1243Â kb)
DOI: 10.15468/dl.dc3d77
title: Occurrence Download

description: A dataset containing 102684645 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 102684645 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039372-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3887410_d5.v1
title: Additional file 5: Table S3. of Evaluation of prokaryotic diversity of five hot springs in Eritrea

description: Abundance of microbial taxa at phyla level in various samples collected from the five hot springs in Eritrea. The first letters of the sample names refer to the five hot springs (A = Akwar, E = Elegedi, G = Garbanabra, J = Gelti and M = Maiwooi), while the second letters are for sample types (A = microbial mat, S = wet sediment, and W = water). (XLSX 10 kb)
DOI: 10.15468/dl.yb77y8
title: Occurrence Download

description: A dataset containing 13343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (BRA.5.215_2, BRA.5.396_2, BRA.5.271_2, BRA.5.416_2, BRA.5.113_2, BRA.5.341_2, BRA.5.10_2)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 13343 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039385-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3887410_d6.v1
title: Additional file 6: Table S4. of Evaluation of prokaryotic diversity of five hot springs in Eritrea

description: Abundance of bacteria at family level in various samples collected from the five hot springs in Eritrea. The first letters of the sample names refer to the five hot springs (A = Akwar, E = Elegedi, G = Garbanabra, J = Gelti and M = Maiwooi), while the second letters are for sample types (A = microbial mat, S = wet sediment, and W = water). (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3887410_d5
title: Additional file 5: Table S3. of Evaluation of prokaryotic diversity of five hot springs in Eritrea

description: Abundance of microbial taxa at phyla level in various samples collected from the five hot springs in Eritrea. The first letters of the sample names refer to the five hot springs (A = Akwar, E = Elegedi, G = Garbanabra, J = Gelti and M = Maiwooi), while the second letters are for sample types (A = microbial mat, S = wet sediment, and W = water). (XLSX 10 kb)
DOI: 10.15468/dl.qfvsj5
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma macrodactylum columbianum Ferguson, 1961)"
 ]
}

 The dataset includes 267 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039386-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3887410_d7
title: Additional file 7: Table S5. of Evaluation of prokaryotic diversity of five hot springs in Eritrea

description: Abundance of archaea at order level in various samples collected from the five hot springs in Eritrea. The first letters of the sample names refer to the five hot springs (A = Akwar, E = Elegedi, G = Garbanabra, J = Gelti and M = Maiwooi), while the second letters are for sample types (A = microbial mat, S = wet sediment, and W = water). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3887410_d6
title: Additional file 6: Table S4. of Evaluation of prokaryotic diversity of five hot springs in Eritrea

description: Abundance of bacteria at family level in various samples collected from the five hot springs in Eritrea. The first letters of the sample names refer to the five hot springs (A = Akwar, E = Elegedi, G = Garbanabra, J = Gelti and M = Maiwooi), while the second letters are for sample types (A = microbial mat, S = wet sediment, and W = water). (XLSX 30 kb)
DOI: 10.15468/dl.9rc4rd
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma macrodactylum croceum Russell & Anderson, 1956)"
 ]
}

 The dataset includes 224 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039387-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnqgnu
title: Occurrence Download

description: A dataset containing 184449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Callinectes sapidus Rathbun, 1896"
 ]
}

 The dataset includes 184449 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039381-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603836_d8.v1
title: Additional file 2: Table S2. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Predicted transcription start sites of RNA-seq detected sRNAs (XLSX 9114Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d1.v1
title: Additional file 8: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Validation of ChIP-seq peaks by ChIP-qPCR. Table showing the ChIP-qPCR fold changes for both wild-type and vhl mutant ChIP samples and the ratio of vhl/wt. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3603836_d9.v1
title: Additional file 7: Table S7. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Differentially expressed sRNA under nutrient-rich and starvation conditions (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d2.v1
title: Additional file 9: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: A table of differentially regulated genes containing a ChIP peaks in their TSS. A table showing the position of ChIP peaks relative the differentially expressed genes from the vhl Vs WT microarray data found using GREAT version 2.02. Fold change, Unigene ID and presence of a HRE are indicated. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3603890_d1.v1
title: Additional file 6: of Insights into the innate immunome of actiniarians using a comparative genomic approach

description: Alignment of NACHT domains from metazoan species. (FASTA 36Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d4.v1
title: Additional file 2: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: The unfiltered list of differentially regulated genes for vhl vs wild-type. The unfiltered list of genes which were differentially regulated with a fold change â Ľ 2 in vhl mutants versus wild-type at 4dpf. Contains; Probe ID, Log 2 Fold Change, AveExpr: Average Expression across all arrays and Channels, t: moderated t statistic, p-value, add.j.p-value: p-value adjusted for multiple testing, B: B statistic, the log of the odds that the probe is differentially expressed, Unigene Description, Unigene ID and Gene Symbol. (XLSX 6344 kb)
DOI: 10.6084/m9.figshare.c.3624239_d12.v1
title: Additional file 8: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Performance of HyPe on independent metagenomic dataset. (XLSX 9Â kb)