cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6j69tl
title: Occurrence Download

description: A dataset listing the 570 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tamarix ramosissima Ledeb."
 ]
}

 The dataset's 570 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004900-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mquj7b
title: Occurrence Download

description: A dataset containing 3511 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is Panama",
 "Country is Costa Rica",
 "Country is Guatemala",
 "Country is Nicaragua",
 "Country is El Salvador",
 "Country is Belize",
 "Country is Honduras"
 ]
 },
 "Geometry POLYGON((-95.95671 17.83258,-95.65707 14.08831,-82.1737 4.34049,-77.52942 8.06328,-77.22979 12.48451,-88.46594 22.88689,-95.95671 17.83258))",
 "HasCoordinate is true",
 "TaxonKey is Desmodus rotundus (E.Geoffroy, 1810)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3511 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010861-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.15020399.v1
title: Additional file 4 of Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

description: Additional file 4: Table S3. Differentially expressed genes.
DOI: 10.6084/m9.figshare.15020402.v1
title: Additional file 5 of Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

description: Additional file 5: Table S4. Gene Ontology term enrichment in differentially expressed genes of PFC microglia.
DOI: 10.6084/m9.figshare.12923273.v1
title: Additional file 4 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 4: Table S4. Analyses the motifs in soybean GRAS proteins from the MEME website.
DOI: 10.6084/m9.figshare.12923282
title: Additional file 7 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 7: Table S6. Tandemly and segmentally duplicated GmGRAS gene pairs.
DOI: 10.6084/m9.figshare.12923288
title: Additional file 9 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 9: Table S8. Non-redundant GmGRAS gene IDs associated with the syntenic relationships between soybean and the other six species.
DOI: 10.6084/m9.figshare.15020486.v1
title: Additional file 5 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 5. List of genes within each WGCNA module.
DOI: 10.6084/m9.figshare.20786765.v1
title: Additional file 1 of Influence of Pleistocene climate fluctuations on the demographic history and distribution of the critically endangered Chinese pangolin (Manis pentadactyla)

description: Additional file 1: Table S1. Best fit MAXENT model based on delta AICc from ENMeval. Table S2. AUC values for each model. Table S3. Sampling site data, gender, distribution clustering, and missing data rate of genetic samples of Chinese pangolins used in this study. Table S4. Estimation of the relative contributions of the environmental variables to the Maxent model. Table S5. Summary of each dataset used for the respective analysis. Table S6. Bioclimatic variable selection for species distribution modelling based on PCA.
DOI: 10.6084/m9.figshare.12923040.v1
title: Additional file 4 of Exploring the protective effect of Modified Xiaochaihu Decoction against hepatic steatosis and inflammation by network pharmacology and validation in ageing rats

description: Additional file 4: Table S4. Results of Gene ontology (GO) functional enrichment analyses divided into three sections: Biological Process, Cellular Component, and Molecular Function.
DOI: 10.6084/m9.figshare.15020477
title: Additional file 2 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 2. DEGs in KO vs. WT, KO_EPM vs. WT_EPM, KO_EPM vs. KO and WT_EPM, vs. WT.
DOI: 10.6084/m9.figshare.15020480.v1
title: Additional file 3 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 3. GO enrichment analysis for genes in DEG1 and DEG2.
DOI: 10.6084/m9.figshare.12923043.v1
title: Additional file 5 of Exploring the protective effect of Modified Xiaochaihu Decoction against hepatic steatosis and inflammation by network pharmacology and validation in ageing rats

description: Additional file 5: Table S5. Results of KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway enrichment analysis
DOI: 10.6084/m9.figshare.15020489
title: Additional file 6 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 6. GO enrichment analysis for genes in MEgreen module.
DOI: 10.5517/ccdc.csd.cc2h4p0c
title: CCDC 2298402: Experimental Crystal Structure Determination

description: Related Article: Sandip Bapu Khatal, Siddhartha K. Purkayastha, Ankur K. Guha, Srinu Tothadi, Sanjay Pratihar|2024|J.Org.Chem.|89|2480|doi:10.1021/acs.joc.3c02504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h4pp1
title: CCDC 2298423: Experimental Crystal Structure Determination

description: Related Article: Sandip Bapu Khatal, Siddhartha K. Purkayastha, Ankur K. Guha, Srinu Tothadi, Sanjay Pratihar|2024|J.Org.Chem.|89|2480|doi:10.1021/acs.joc.3c02504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h4pzb
title: CCDC 2298432: Experimental Crystal Structure Determination

description: Related Article: Sandip Bapu Khatal, Siddhartha K. Purkayastha, Ankur K. Guha, Srinu Tothadi, Sanjay Pratihar|2024|J.Org.Chem.|89|2480|doi:10.1021/acs.joc.3c02504
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23684562
title: <b>Contribution of peer-feedback to the development of teamwork skills</b>. <b><i>Supplemental material</i></b>

description: <b>Project:</b>Enhancing the individualized evaluation of group projects through peer evaluation strategies and feedback.More information about the project<b>Software:</b>SPSS version 26 – 26.0.0.1<b>Other:</b>Data collected using Cuestionario EAIF (Estrategias de evaluación entre iguales y feedback/ Assessment strategies between peers and feedback) (Sánchez-Martí et al., 2019, doi:10.21865/RIDEP53.4.09)<b>Contact information:</b>Researchers interested in our research and the original database can contact the research project coordinator (Georgeta Ion, georgeta.ion@uab.cat).
DOI: 10.6084/m9.figshare.23684562.v2
title: <b>Contribution of peer-feedback to the development of teamwork skills</b>. <b><i>Supplemental material</i></b>

description: <b>Project:</b>Enhancing the individualized evaluation of group projects through peer evaluation strategies and feedback.More information about the project<b>Software:</b>SPSS version 26 – 26.0.0.1<b>Other:</b>Data collected using Cuestionario EAIF (Estrategias de evaluación entre iguales y feedback/ Assessment strategies between peers and feedback) (Sánchez-Martí et al., 2019, doi:10.21865/RIDEP53.4.09)<b>Contact information:</b>Researchers interested in our research and the original database can contact the research project coordinator (Georgeta Ion, georgeta.ion@uab.cat).
DOI: 10.6084/m9.figshare.23684562.v1
title: Supplemental material.pdf

description: <b>Project:</b>Enhancing the individualized evaluation of group projects through peer evaluation strategies and feedback.More information about the project<b>Software:</b>SPSS version 26 – 26.0.0.1<b>Other:</b>Data collected using Cuestionario EAIF (Estrategias de evaluación entre iguales y feedback/ Assessment strategies between peers and feedback) (Sánchez-Martí et al., 2019, doi:10.21865/RIDEP53.4.09)<b>Contact information:</b>Researchers interested in our research and the original database can contact the research project coordinator (Georgeta Ion, georgeta.ion@uab.cat).
DOI: 10.6084/m9.figshare.6634424
title: A clinical carepath for obese pregnant women: a pragmatic pilot cluster randomized controlled trial

description: <b>Objectives:</b> Obese women are at increased risks for complications during pregnancy, birth, and in their infants. Although guidelines have been established for the clinical care of obese pregnant women, management is sometimes suboptimal. Our goal was to determine the feasibility of implementing and testing a clinical carepath for obese pregnant women compared to standard care, in a pilot cluster randomized controlled trial (RCT). <b>Methods:</b> A pragmatic pilot cluster RCT was conducted, randomly allocating eight clinics to the carepath or standard care for obese pregnant women. Women were eligible if they had a pre-pregnancy body mass index (BMI) of ≥30 kg/m<sup>2</sup> and a viable singleton &lt;21 weeks. The primary outcomes were the feasibility of conducting a full-scale cluster RCT (defined as &gt;80%: randomization of clinics, use in eligible women, and completeness of follow-up) and of the intervention (defined as &gt;80%: compliance with each step in the carepath and recommendation of the carepath by clinicians to a colleague). <b>Results:</b> All eight approached clinics agreed to participate and were randomized. Half of the intervention clinics used the carepath, resulting in &lt;80% uptake of eligible women. High follow-up (99.5%) was achieved, in 188 of 189 women. The carepath was feasible for numerous guideline-directed recommendations for screening, but less so for counseling topics. When the carepath was used in the majority of women, all clinicians, most of whom were midwives, reported they would recommend it to a colleague. The intervention group had significantly higher overall adherence to the guideline recommendations compared to control (relative risk: 1.71, 95% confidence interval: 1.57–1.87). <b>Conclusions:</b> In this pragmatic pilot cluster RCT, a guideline-directed clinical carepath improved some aspects of care of obese pregnant women and was recommended by clinicians, particularly midwives. A cluster RCT may not be feasible in a mix of obstetric and midwifery clinics, but may be feasible in midwifery clinics.
DOI: 10.6084/m9.figshare.6634424.v3
title: A clinical carepath for obese pregnant women: a pragmatic pilot cluster randomized controlled trial

description: <b>Objectives:</b> Obese women are at increased risks for complications during pregnancy, birth, and in their infants. Although guidelines have been established for the clinical care of obese pregnant women, management is sometimes suboptimal. Our goal was to determine the feasibility of implementing and testing a clinical carepath for obese pregnant women compared to standard care, in a pilot cluster randomized controlled trial (RCT). <b>Methods:</b> A pragmatic pilot cluster RCT was conducted, randomly allocating eight clinics to the carepath or standard care for obese pregnant women. Women were eligible if they had a pre-pregnancy body mass index (BMI) of ≥30 kg/m<sup>2</sup> and a viable singleton &lt;21 weeks. The primary outcomes were the feasibility of conducting a full-scale cluster RCT (defined as &gt;80%: randomization of clinics, use in eligible women, and completeness of follow-up) and of the intervention (defined as &gt;80%: compliance with each step in the carepath and recommendation of the carepath by clinicians to a colleague). <b>Results:</b> All eight approached clinics agreed to participate and were randomized. Half of the intervention clinics used the carepath, resulting in &lt;80% uptake of eligible women. High follow-up (99.5%) was achieved, in 188 of 189 women. The carepath was feasible for numerous guideline-directed recommendations for screening, but less so for counseling topics. When the carepath was used in the majority of women, all clinicians, most of whom were midwives, reported they would recommend it to a colleague. The intervention group had significantly higher overall adherence to the guideline recommendations compared to control (relative risk: 1.71, 95% confidence interval: 1.57–1.87). <b>Conclusions:</b> In this pragmatic pilot cluster RCT, a guideline-directed clinical carepath improved some aspects of care of obese pregnant women and was recommended by clinicians, particularly midwives. A cluster RCT may not be feasible in a mix of obstetric and midwifery clinics, but may be feasible in midwifery clinics.
DOI: 10.6084/m9.figshare.6634424.v2
title: A clinical carepath for obese pregnant women: a pragmatic pilot cluster randomized controlled trial

description: <b>Objectives:</b> Obese women are at increased risks for complications during pregnancy, birth, and in their infants. Although guidelines have been established for the clinical care of obese pregnant women, management is sometimes suboptimal. Our goal was to determine the feasibility of implementing and testing a clinical carepath for obese pregnant women compared to standard care, in a pilot cluster randomized controlled trial (RCT). <b>Methods:</b> A pragmatic pilot cluster RCT was conducted, randomly allocating eight clinics to the carepath or standard care for obese pregnant women. Women were eligible if they had a pre-pregnancy body mass index (BMI) of ≥30 kg/m<sup>2</sup> and a viable singleton &lt;21 weeks. The primary outcomes were the feasibility of conducting a full-scale cluster RCT (defined as &gt;80%: randomization of clinics, use in eligible women, and completeness of follow-up) and of the intervention (defined as &gt;80%: compliance with each step in the carepath and recommendation of the carepath by clinicians to a colleague). <b>Results:</b> All eight approached clinics agreed to participate and were randomized. Half of the intervention clinics used the carepath, resulting in &lt;80% uptake of eligible women. High follow-up (99.5%) was achieved, in 188 of 189 women. The carepath was feasible for numerous guideline-directed recommendations for screening, but less so for counseling topics. When the carepath was used in the majority of women, all clinicians, most of whom were midwives, reported they would recommend it to a colleague. The intervention group had significantly higher overall adherence to the guideline recommendations compared to control (relative risk: 1.71, 95% confidence interval: 1.57–1.87). <b>Conclusions:</b> In this pragmatic pilot cluster RCT, a guideline-directed clinical carepath improved some aspects of care of obese pregnant women and was recommended by clinicians, particularly midwives. A cluster RCT may not be feasible in a mix of obstetric and midwifery clinics, but may be feasible in midwifery clinics.
DOI: 10.6084/m9.figshare.15020480
title: Additional file 3 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 3. GO enrichment analysis for genes in DEG1 and DEG2.
DOI: 10.6084/m9.figshare.15020489.v1
title: Additional file 6 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 6. GO enrichment analysis for genes in MEgreen module.
DOI: 10.6084/m9.figshare.25244524
title: <b>The predictive ability of Mayo adhesive probability score and determination of risk factors for intraoperative bleeding in standard percutaneous nephrolithotomy</b>

description: The dataset of the manuscript of <b>The predictive ability of Mayo adhesive probability score and determination of risk factors for intraoperative bleeding in standard percutaneous nephrolithotomy</b>
DOI: 10.6084/m9.figshare.25244524.v1
title: <b>The predictive ability of Mayo adhesive probability score and determination of risk factors for intraoperative bleeding in standard percutaneous nephrolithotomy</b>

description: The dataset of the manuscript of <b>The predictive ability of Mayo adhesive probability score and determination of risk factors for intraoperative bleeding in standard percutaneous nephrolithotomy</b>
DOI: 10.6084/m9.figshare.8207336.v1
title: Additional file 5: of Phylogeny, Divergent Evolution, and Speciation of Sulfur-Oxidizing Acidithiobacillus Populations

description: Table S7. Gene content of genomic regions associated with carboxysome and nitrogenase in Acidithiobacillus strains. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.15020525
title: Additional file 10 of Microglial responses to CSF1 overexpression do not promote the expansion of other glial lineages

description: Additional file 10: Supplemental Table 1. Genes that were found to be differentially expressed in microglia from CSF1 OE mice compared to control (CON). PPDE= posterior probability of differential expression, FC= fold change. Normalized expected counts are shown for each gene for each of four samples from the two genotypes.
DOI: 10.6084/m9.figshare.15020492
title: Additional file 7 of RNA-seq co-expression network analysis reveals anxiolytic behavior of mice with Efnb2 knockout in parvalbumin+ neurons

description: Additional file 7. KEGG enrichment analysis for genes in MEgreen module.
DOI: 10.6084/m9.figshare.12923411.v1
title: Additional file 3 of Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis

description: Additional file 3: Differential expressed proteins (DEPs)in GB group compared with MPP+ group.
DOI: 10.6084/m9.figshare.12923414
title: Additional file 4 of Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis

description: Additional file 4: Differential expressed proteins (DEPs)in GBHC-4 group compared with MPP+ group.
DOI: 10.6084/m9.figshare.12923408.v1
title: Additional file 2 of Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis

description: Additional file 2: Differential expressed proteins (DEPs)in MPP+ group compared with control group.
DOI: 10.6084/m9.figshare.12923414.v1
title: Additional file 4 of Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis

description: Additional file 4: Differential expressed proteins (DEPs)in GBHC-4 group compared with MPP+ group.
DOI: 10.6084/m9.figshare.24457724.v1
title: Additional file 1 of Provenance differentiation and earth surface process of the Mu Us sandy land constrained by detrital zircon U–Pb dating

description: Additional file 1. Table S1. Detrital zircon U-Pb ages of sediments in the Mu Us sandy land from this work.
DOI: 10.6084/m9.figshare.12923408
title: Additional file 2 of Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis

description: Additional file 2: Differential expressed proteins (DEPs)in MPP+ group compared with control group.
DOI: 10.6084/m9.figshare.15020525.v1
title: Additional file 10 of Microglial responses to CSF1 overexpression do not promote the expansion of other glial lineages

description: Additional file 10: Supplemental Table 1. Genes that were found to be differentially expressed in microglia from CSF1 OE mice compared to control (CON). PPDE= posterior probability of differential expression, FC= fold change. Normalized expected counts are shown for each gene for each of four samples from the two genotypes.
DOI: 10.6084/m9.figshare.19738281
title: Additional file 4 of Integrated investigation of DNA methylation, gene expression and immune cell population revealed immune cell infiltration associated with atherosclerotic plaque formation

description: Additional file 4: Table S3. The detial DNA methylation density of DMGs. All PBMC and plaque samples were shown for each gene.
DOI: 10.6084/m9.figshare.21310708
title: Additional file 2 of Construction of a transposase accessible chromatin landscape reveals chromatin state of repeat elements and potential causal variant for complex traits in pigs

description: Additional file 2: Fig. S1. The analysis process and characteristics of peaks. (a) and (b) The ATAC-seq signal enrichment around TSSs and insert size distribution of ATAC-seq for 2 samples (brain_sample1 and brain_sample2). (c) Proportion of tissue-specific peaks that were distal peaks or proximal peaks. (d) Distribution of peak size obtained in this study. Fig. S2. Identifying the functional pathway and tissue specificity via RNA-seq. (a) Hierarchical clustering using gene expression. (b) Functional enrichment of tissue-specific expression genes for each tissue based on Gene Ontology (GO) biological processes (left). Distribution of the number of tissue-specific genes (right). (c) Representative examples of heart specific gene which is highly expressed in heart tissue. (d) Bar plot showing representative biological processes enriched in target genes of the system specific peaks and conserved peaks. Different colors refer to different systems, and light yellow indicates biological processes enriched in target genes of conserved peaks. (e) Bar plot showing peak intensity of liver specific peaks which located close to ARG1 (a protein coding gene expressed primarily in the liver and involved in the urea cycle). (f) Functional enrichment of genes for each tissue based on GO biological processes. The columns represent 20 tissues. The rows represent GO terms in each tissue (upper). Representative examples of enriched biological processes in target genes of heart specific peaks (bottom). Fig. S3. Hierarchical clustering inferred from peak intensity and gene expression. (a) Hierarchical clustering using peak intensity. The top 100,000 peaks with high intensity were used for the analysis. (b) Hierarchical clustering using gene expression. The top 5000 highly variable genes were used for the analysis. Fig. S4. The flowchart and outcomes from the correlation between peak intensity and gene expression.