cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/f5jn8-1en49
title: A.longum on Propanediol

description: Raw data files of A.longum on Propanediol
description: <strong>Tilt Series Date:</strong> 2009-03-12</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, -60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase on only Propanediol (induces pdu formation) </p>
<strong>Sample Preparation:</strong>  quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-12-9/rawdata/</p>09mar11c_pos6Alongum_011.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell11_full.rec,  Reconstruction (Pixel Size 1.922 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-12-9/3dimage_6447/cell11_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y19s3-vjc49
title: Pfl 121509 MP36

description: Prosthecobacter fluviatilis, 10jan14a_MP36_Pfl-stat_019,
description: <strong>Tilt Series Date:</strong> 2010-01-14</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter fluviatilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2010-01-14-15_slicer6874.jpg: filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-01-14-15/rawdata/</p>10jan14a_MP36_Pfl-stat_019.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10jan14a_MP36_Pfl-stat_019_part.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.4121/fa259c52-a585-420c-8a0c-af5e91518e29
title: Annotated mobile laser scans of the Dutch railway environment

description: This dataset contains point cloud data of two stretches of railway track in the Netherlands. One stretch covers the trajectory between Deventer and Twello, the other stretch is located around Dronten. The data have been captured using a Veldodyne VLP-16 mobile laser scanner mounted on a dedicated measurement train by Strukton Rail. For both stretches, the EPSG:32631 coordinate reference system (CRS) was used for the captured point clouds and for the timestamps Coordinated Universal Time (UTC) was used. The provided files are LAZ files. The trajectory of the measurement train is also logged using the ETRS89 CRS.<br>In common, these four classes are annotated:Background, label=0Catenary masts, label=1Tension rods, label=3Signals, label=4Relay cabinets, label=5<br>Label values are stored in conjunction with the data using a 'Scalar Field' attribute. Each annotated object also carries a unique identifier (uid). This uid is also provided as a 'Scalar Field' attribute within the data.<br>** Deventer-Twello **Length: 6.5 kmAcquisition date: 2021-06-14Trajectory log time zone: Central European Summer Time (CEST, UTC+02:00)<br>Additional notes:The measurement train drove four times back and forth on the same piece of track. The measurement train did not turn at the end of the section, but instead just drove backwards. Reversing a train is not easy. This implies that objects are not captured from both directions on the track. Each trip of the measurement train will be referred to as a run. All four runs are merged together into one file. Each of the runs can be distinguished by the `run` Scalar Field attribute.<br>This dataset has partial labels for signs (label=6) and lamp posts (label=2).<br>** Dronten **Length: 2.9 kmAcquisition date: 2021-11-16Trajectory log time zone: Central European Time (CET, UTC+01:00)<br>Additional notes:This dataset has one additional label, the arms of catenary masts have also been labelled (label=7). The arm carries the same uid as the mast.The timestamps between the point cloud data and the trajectory log are not synchronised.<br>** Early access **The dataset is available under an embargo. If you would like to obtain the dataset before the embargo period expires, send an e-mail with a short motivation to Corne.vandekraats at strukton dot com
DOI: 10.4121/fa259c52-a585-420c-8a0c-af5e91518e29.v2
title: Annotated mobile laser scans of the Dutch railway environment

description: This dataset contains point cloud data of two stretches of railway track in the Netherlands. One stretch covers the trajectory between Deventer and Twello, the other stretch is located around Dronten. The data have been captured using a Veldodyne VLP-16 mobile laser scanner mounted on a dedicated measurement train by Strukton Rail. For both stretches, the EPSG:32631 coordinate reference system (CRS) was used for the captured point clouds and for the timestamps Coordinated Universal Time (UTC) was used. The provided files are LAZ files. The trajectory of the measurement train is also logged using the ETRS89 CRS.<br>In common, these four classes are annotated:Background, label=0Catenary masts, label=1Tension rods, label=3Signals, label=4Relay cabinets, label=5<br>Label values are stored in conjunction with the data using a 'Scalar Field' attribute. Each annotated object also carries a unique identifier (uid). This uid is also provided as a 'Scalar Field' attribute within the data.<br>** Deventer-Twello **Length: 6.5 kmAcquisition date: 2021-06-14Trajectory log time zone: Central European Summer Time (CEST, UTC+02:00)<br>Additional notes:The measurement train drove four times back and forth on the same piece of track. The measurement train did not turn at the end of the section, but instead just drove backwards. Reversing a train is not easy. This implies that objects are not captured from both directions on the track. Each trip of the measurement train will be referred to as a run. All four runs are merged together into one file. Each of the runs can be distinguished by the `run` Scalar Field attribute.<br>This dataset has partial labels for signs (label=6) and lamp posts (label=2).<br>** Dronten **Length: 2.9 kmAcquisition date: 2021-11-16Trajectory log time zone: Central European Time (CET, UTC+01:00)<br>Additional notes:This dataset has one additional label, the arms of catenary masts have also been labelled (label=7). The arm carries the same uid as the mast.The timestamps between the point cloud data and the trajectory log are not synchronised.<br>** Early access **The dataset is available under an embargo. If you would like to obtain the dataset before the embargo period expires, send an e-mail with a short motivation to Corne.vandekraats at strukton dot com
DOI: 10.22002/42m56-4cd02
title: E.coli "strain 3" G235E CheA on

description: chromosomal chemoreceptor mutant G235E "CheA on"
description: <strong>Tilt Series Date:</strong> 2012-02-10</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sandy Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> culture grown in TB medium (+GEntamycin) to OD (600) 0.31 at 30 degrees. Additional one hour incubation with penicillin before freezing.</p>
<strong>Sample Preparation:</strong> freezing with Vitrobot @ 100 % humidity, -4 offset, 3.5 s blot time, no drain, 3 µl sample, pure ethane.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-02-10-23/rawdata/</p>strain30023.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        strain30023_full.rec,  Reconstruction (Pixel Size 1.288 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-02-10-23/3dimage_16372/strain30023_full.rec"
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DOI: 10.6084/m9.figshare.29991571
title: LMX ABA Dataset

description: Dataset for experiment on leader-member exchange and delivery format in the context of applied behavior analysis.
DOI: 10.6084/m9.figshare.29991571.v1
title: LMX ABA Dataset

description: Dataset for experiment on leader-member exchange and delivery format in the context of applied behavior analysis.
DOI: 10.22002/9p10s-eap62
title: Pdb 082609 MP18

description: Prosthecobacter debontii, 09sep10b_082609_MP18Pde_068, putative btub structure (1 tube),
description: <strong>Tilt Series Date:</strong> 2009-09-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-09-10-50_slicer8339.jpg: Pili  .  Prosthecobacter debontii mpa2009-09-10-50_slicer8340.jpg: Filament .  Prosthecobacter debontii mpa2009-09-10-50_slicer8345.jpg: Filament .  Prosthecobacter debontii
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-09-10-50/rawdata/</p>09sep10b_082609_MP18Pde_068.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        09sep10b_082609_MP18Pde_068_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mw2a7-57g61
title: Bacillus subtilis JFG351

description: Raw data files of Bacillus subtilis JFG351
description: <strong>Tilt Series Date:</strong> 2009-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, -60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Jennifer (Pogliano lab)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Induced sporulation t=2.5</p>
<strong>Sample Preparation:</strong> quantifoil grid, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-28-17/rawdata/</p>09jul28a_pos3_018.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell18_full.rec,  Reconstruction (Pixel Size 1.922 nm), 708.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-28-17/3dimage_6245/cell18_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.es64pu
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Melacoryphus nigrinervis"
 ]
}

 The dataset includes 168 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047533-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/wkphz-5qq76
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-17</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grow in LB</p>
<strong>Sample Preparation:</strong> Polara</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-17-21/rawdata/</p>3267a0006.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-17-21/rawdata/3267a0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267a0006_full.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9ph54-hx473
title: Hyphomonas session14 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-05-22</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, overnight at 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-57/rawdata/</p>09may22b_bx22gr1_032.mrc,  Tilt Series (Pixel Size 0.774 nm), 520.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09may22b_bx22gr1_032_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 50.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3wmev-we922
title: MT310_xyl(-)_metal(-)

description: Raw data files of MT310_xyl(-)_metal(-)
description: <strong>Tilt Series Date:</strong> 2009-06-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cell cultured and treated by Zhuo Li; data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MT310 cells were cultured for 20 hours. No xylsoe or metal salt was added. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-21-42/rawdata/</p>09jun21a_Ctlnoxyl_049.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun21a_Ctlnoxyl_049_part.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vs079-5r804
title: Hyphomonas session9 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-28/rawdata/</p>09mar07a_36c_028.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar07a_36c_028_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
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DOI: 10.34740/kaggle/dsv/12879536
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.16794982
title: gtx21 database

description: Database file used in the Genetox21 application. Contains a variety of chemical and genotoxicity data.
DOI: 10.22002/03808-8sp11
title: Pva 020710 MP47

description: Prosthecobacter vanneervenii, 10feb07a_MP47_Pva_exp_081,
description: <strong>Tilt Series Date:</strong> 2010-02-07</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2010-02-07-71_slicer6654.jpg: pilli mpa2010-02-07-71_slicer6655.jpg: filament mpa2010-02-07-71_slicer6656.jpg: filament mpa2010-02-07-71_slicer6657.jpg: REZ
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-71/rawdata/</p>10feb07a_MP47_Pva_exp_081.mrc,  Tilt Series (Pixel Size 0.95 nm), 897.6 MB  
        
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        10feb07a_MP47_Pva_exp_081_part.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
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DOI: 10.5281/zenodo.16953096
title: gtx21 database

description: Database file used in the Genetox21 application. Contains a variety of chemical and genotoxicity data.