cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.baedpf
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.0464 5.68391,-74.07151 5.68391,-74.07151 6.80045,-76.0464 6.80045,-76.0464 5.68391))",
 "HasGeospatialIssue is false",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054622-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1091417
title: Site Data from an Archaeological Evaluation at Conference Way, Vale Park, Evesham May 2021

description: This collection comprises images, spreadsheets and GIS data from an archaeological evaluation at Conference Way, Vale Park, Evesham, Worcestershire. This work was undertaken by Worcestershire Archaeology in May 2021.
DOI: 10.15468/dl.hwatc3
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psilopogon asiaticus",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 304 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042409-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87feyw
title: Occurrence Download

description: A dataset containing 5424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sporobolus vaginiflorus (Torr. ex A.Gray) Alph.Wood)"
 ]
}

 The dataset includes 5424 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028471-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g48x68
title: Occurrence Download

description: A dataset containing 32546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Asparagus asparagoides (L.) Druce)"
 ]
}

 The dataset includes 32546 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028466-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgcqbw
title: Occurrence Download

description: A dataset containing 715555 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Anthriscus sylvestris (L.) Hoffm.)"
 ]
}

 The dataset includes 715555 records from 2497 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028336-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz6ciw
title: Occurrence Download

description: A dataset containing 1120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orchis spitzelii Saut. ex W.D.J.Koch"
 ]
}

 The dataset includes 1120 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001625-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2luou
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Andropogon virginicus L."
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032826-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yettg7
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrus ussuriensis Maxim."
 ]
}

 The dataset's 3 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007604-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lwanp8
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Sedum carinatifolium (R.T.Clausen) Pérez-Calif",
 "TaxonKey is Hechtia lepidophylla I.Ramírez",
 "TaxonKey is Hechtia zamudioi Espejo, López-Ferr. & I.Ramírez",
 "TaxonKey is Cirsium bicentenariale Rzed.",
 "TaxonKey is Sedum jerzedowskii Pérez-Calif",
 "TaxonKey is Cyclanthera jeffreyi Lira & I.Rodr.-Arévalo",
 "TaxonKey is Zinnia zamudiana Calderón & Rzed.",
 "TaxonKey is Allowissadula glandulosa (Rose) D.M.Bates",
 "TaxonKey is Rubus macvaughianus Rzed. & Calderón",
 "TaxonKey is Valeriana zamoranensis Rzed. & Calderón",
 "TaxonKey is Viola cochranei H.E.Ballard",
 "TaxonKey is Styrax argenteus var. parvifolius E.Carranza"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 84 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001625-171020152545675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hu7auv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-98.5 18.83,-97.33 18.83,-97.33 20.67,-98.5 20.67,-98.5 18.83))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psychotria hidalgensis Borhidi"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190054-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k1pnoy
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centrolene ballux (Duellman & Burrowes, 1989)"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032821-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsbrbz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium pentadactyli Brullo, Pavone & Spamp"
 ]
}

 The dataset includes 8 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026298-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fb8wej
title: Occurrence Download

description: A dataset containing 260738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2012-2017",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Amphibromus Nees",
 "TaxonKey is Torreyochloa Church",
 "TaxonKey is Arrhenatherum P.Beauv.",
 "TaxonKey is Avellinia Parl.",
 "TaxonKey is Avena L.",
 "TaxonKey is Gaudinia P.Beauv.",
 "TaxonKey is Graphephorum Desv.",
 "TaxonKey is Helictotrichon Besser",
 "TaxonKey is Koeleria Pers.",
 "TaxonKey is Lagurus L.",
 "TaxonKey is Leptophyllochloa Calderón ex Nicora",
 "TaxonKey is Peyritschia E.Fourn. ex Benth. & Hook.f., 1883",
 "TaxonKey is Rostraria Trin.",
 "TaxonKey is Sphenopholis Scribn.",
 "TaxonKey is Trisetaria Forssk.",
 "TaxonKey is Trisetum Pers.",
 "TaxonKey is Phalaris L.",
 "TaxonKey is Anthoxanthum L.",
 "TaxonKey is Airopsis Desv.",
 "TaxonKey is Briza L.",
 "TaxonKey is Chascolytrum",
 "TaxonKey is Relchela Steud.",
 "TaxonKey is Agrostis L.",
 "TaxonKey is Ammophila Host",
 "TaxonKey is Ancistragrostis S. T. Blake",
 "TaxonKey is Bromidium Nees & Meyen",
 "TaxonKey is Calamagrostis Adans.",
 "TaxonKey is Chaetopogon Janch.",
 "TaxonKey is Dichelachne Endl.",
 "TaxonKey is Echinopogon P.Beauv.",
 "TaxonKey is Hypseochloa C.E.Hubb.",
 "TaxonKey is Gastridium Lyngbye, 1819",
 "TaxonKey is Lachnagrostis",
 "TaxonKey is Limnodea L.H.Dewey",
 "TaxonKey is Pentapogon R.Br.",
 "TaxonKey is Podagrostis (Griseb.) Scribn. & Merr.",
 "TaxonKey is Polypogon Desf.",
 "TaxonKey is Triplachne Link"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 260738 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001625-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9skr66
title: Occurrence Download

description: A dataset containing 8449 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Decapoda Databank"
 ]
}

 The dataset includes 8449 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341169-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kpvkh
title: Occurrence Download

description: A dataset containing 1786 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physaria gracilis (Hook.) O'Kane & Al-Shehbaz"
 ]
}

 The dataset includes 1786 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190057-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8awihh
title: Occurrence Download

description: A dataset containing 8844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aulacorhynchus prasinus (Gould, 1833)"
 ]
}

 The dataset includes 8844 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001626-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmg39x
title: Occurrence Download

description: A dataset containing 17823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "GadmGid is ESP.1.2_1",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 17823 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050792-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxjwsj
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Conservación in situ y mejoramiento participativo de los maíces nativos y sus parientes silvestres en Oaxaca (Silacayoapan)"
 ]
}

 The dataset includes 230 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341167-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsticv
title: Occurrence Download

description: A dataset containing 1743 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Flacourtia indica (Burm.fil.) Merr."
 ]
}

 The dataset includes 1743 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001626-150330110031120/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyjrrs
title: Occurrence Download

description: A dataset containing 763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salvia fulgens Cav."
 ]
}

 The dataset includes 763 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006131-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83xcc2
title: Occurrence Download

description: A dataset containing 1328882 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ciconia ciconia (Linnaeus, 1758)"
 ]
}

 The dataset includes 1328882 records from 1390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006125-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnztmu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bokermannohyla gouveai (Peixoto & Cruz, 1992)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028190-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18164/b179439e-badf-4116-a747-51b3c4a66c73
title: Ottawa ACES mobile surveys 2022
title: Mesures mobiles collectées par ACES à Ottawa en 2022

description: These datafiles contain observations collected with the Atmospheric Composition and Environmental Survey (ACES) platform during a series of mobile surveys in the metropolitan area of Ottawa in October 2022. Each file contains calibrated data from a LI-COR LI-7810 and from an Airmar 220-WX weather station. The LI-COR LI-7810 measures atmospheric CH4, CO2 and H2O mole fractions and the Airmar 220-WX measures weather conditions (air temperature, atmospheric pressure, wind conditions) and GPS coordinates.
description: Ces fichiers de données contiennent les observations collectées avec la plateforme mobile ACES lors d'une campagne de mesures realisées dans la région metropolitaine de Ottawa en octobre 2022. Chaque fichier contient les données calibrées provenant d'un LI-COR LI-7810 ainsi que d'une station météorologique Airmar 220-WX. Le LI-COR LI-7810 mesure les fractions molaires de CH4, CO2 et H2O tandis que l'Airmar 220-WX mesures les conditions météorologiques (température de l'air, pression atmosphérique, conditions de vent) et les coordonnées GPS.
DOI: 10.60893/figshare.pof.26830213
title: Supplementary material

description: See the supplementary material for the cross-sectional areas of the nasal cavities, roughness of the 3D printed models, Reynolds number inside the nasal cavities, and Aerodynamics for exhalation.
DOI: 10.60893/figshare.pof.26830213.v1
title: Supplementary material

description: See the supplementary material for the cross-sectional areas of the nasal cavities, roughness of the 3D printed models, Reynolds number inside the nasal cavities, and Aerodynamics for exhalation.
DOI: 10.15468/dl.rgswj6
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bokermannohyla hylax (Heyer, 1985)"
 ]
}

 The dataset includes 273 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028191-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nj792
title: Occurrence Download

description: A dataset containing 13480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (PRT.2_1, PRT)",
 "TaxonKey is Teira dugesii (Milne-Edwards, 1829)"
 ]
}

 The dataset includes 13480 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028192-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cj3uc8
title: Occurrence Download

description: A dataset containing 2509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ESP.13_1, ITA, ITA.14_1, ESP)",
 "TaxonKey is Testudo graeca Linnaeus, 1758"
 ]
}

 The dataset includes 2509 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028193-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2egqpp
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambrosia cheiranthifolia A.Gray"
 ]
}

 The dataset includes 60 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028194-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13833478
title: Nucleus and cell segmentations for data in the mudRapp-seq paper

description: Segmentation masks for images published with the paper describing 

"Multiple direct RNA padlock probing in combination with in-situ sequencing (mudRapp-seq)":



Ahmad S, Gribling-Burrer AS, Schaust J, Fischer SC, Ambil UB, Ankenbrand MJ, Smyth RP. Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and in-situ sequencing (mudRapp-seq) (in review)


Raw images are published in the Bioimage Archive (identifier pending). To use these masks, run the data formatting code in the accompanying code repository to get the raw data in the correct structure and extract this zip archive into the repository root (the folder structure in the archive matches the folder structure of the repository).

Filenames in `analysis/segmentation` contain a hint about how they were created:



cp: direct segmentation with a cellpose model (nuclei, cells)

cpws: cell segmentation through watershed with nucleus masks as seeds

cpmc: manually corrected cellpose segmentations


Besides the final segmentation masks, the training data are included in `data/training` and the models in `models/cellpose`.

Changes:



v1.1 training data and models added
DOI: 10.5281/zenodo.13796668
title: Nucleus and cell segmentations for data in the mudRapp-seq paper

description: Segmentation masks for images published with the paper describing 

"Multiple direct RNA padlock probing in combination with in-situ sequencing (mudRapp-seq)":



Ahmad S, Gribling-Burrer AS, Schaust J, Fischer SC, Ambil UB, Ankenbrand MJ, Smyth RP. Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and in-situ sequencing (mudRapp-seq) (in review)


Raw images are published in the Bioimage Archive (identifier pending). To use these masks, run the data formatting code in the accompanying code repository to get the raw data in the correct structure and extract this zip archive into the repository root (the folder structure in the archive matches the folder structure of the repository).

Filenames in `analysis/segmentation` contain a hint about how they were created:



cp: direct segmentation with a cellpose model (nuclei, cells)

cpws: cell segmentation through watershed with nucleus masks as seeds

cpmc: manually corrected cellpose segmentations


Besides the final segmentation masks, the training data are included in `data/training` and the models in `models/cellpose`.

Changes:



v1.1 training data and models added
DOI: 10.5281/zenodo.13796669
title: Nucleus and cell segmentations for data in the mudRapp-seq paper

description: Segmentation masks for images published with the paper describing 

"Multiple direct RNA padlock probing in combination with in-situ sequencing (mudRapp-seq)":



Ahmad S, Gribling-Burrer AS, Schaust J, Fischer SC, Ambil UB, Ankenbrand MJ, Smyth RP. Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and in-situ sequencing (mudRapp-seq) (in review)


Raw images are published in the Bioimage Archive (identifier pending). In order to use these masks, run the data formatting code in the accompanying code repository to get the raw data in the correct structure and extract the segmentation.zip archive into analysis/segmentation.

Filenames contain a hint on how they were created:



cp: direct segmentation with a cellpose model (nuclei, cells)

cpws: cell segmentation through watershed with nucleus masks as seeds

cpmc: manually corrected cellpose segmentations
DOI: 10.23729/7fd67b5a-e444-4a55-b302-f47e15683484
title: 2024_Vahid_JPC

description: This data set contains the simulation input files, scripts, and figures data belonging to the publication

Hossein Vahid, Alberto Scacchi, Maria Sammalkorpi, and Tapio Ala-Nissila. "Adsorption of polyelectrolytes in the presence of varying dielectric discontinuity between solution and substrate", The Journal of Chemical Physics (2024). 
https://doi.org/10.1063/5.0223124

Please cite the above publication when using this data set!

This work was supported by Finnish Cultural Foundation under grant no. 00241182 (H.V.). The work was also supported by the Academy of Finland through its Centres of Excellence Programme (2022-2029, LIBER) under project nos. 346111 and 364205 (M.S.), Academy of Finland project no. 359180 (M.S.) and under the European Union – NextGenerationEU instrument by the Academy of Finland grant 353298 (T.A-N.). The work was further supported by Technology Industries of Finland Centennial Foundation TT2020 grant (T.A-N.). We are grateful for the support by FinnCERES Materials Bioeconomy Ecosystem. Computational resources by CSC IT Centre for Finland, RAMI -- RawMatters Finland Infrastructure and the Aalto Science-IT are also gratefully acknowledged.
DOI: 10.15468/dl.p95vsv
title: Occurrence Download

description: A dataset containing 1482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP.13_1",
 "TaxonKey is Testudo hermanni Gmelin, 1789"
 ]
}

 The dataset includes 1482 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028195-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wpavj
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ITA, ITA.14_1)",
 "TaxonKey is Testudo marginata Schoepff, 1792"
 ]
}

 The dataset includes 123 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028196-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.