cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/7lftec
title: Supplementary file : Chevalier et al. (2020). A demogenetic individual based model for the evolution of traits and genome architecture under sexual selection.

description: Supplementary file for a Peer-reviewed and recommended article in PCI Evolutionary Biology. This appendix file will be linked to the PCJ (Peer Community Journal) version of the article.
DOI: 10.15454/7ydqs0
title: Projet Artisols - Indice de fragmentation des espaces non artificialisés - Occitanie - 2019

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. L'indice de fragmentation des milieux non artificialisés est construit à partir des zones qui ne sont ni des taches artificialisées à 100 mètres ni du réseau routier. Cet indice prend la forme d'une taille effective de maille, à savoir une grandeur qui exprime « la probabilité que deux points choisis au hasard dans un territoire [...] ne soient pas séparés par des obstacles tels que les voies de communication ou des zones bâties » (J. Jaeger, 2007). Cette grandeur est ici exprimée en km². Cet indice est calculé par commune et pour l'année 2019. Plus il est faible, plus les espaces non artificialisés sont fragmentés.
DOI: 10.15454/8clego
title: Above and belowground biomass data for a set of beech trees of different age and crown classes sampled in Hesse state forest (NE France) with a view to analyzing the distribution and the allocation of biomass in the tree

description: A first set (samples 1 and 2 in the data tables) comprising 23 beech (Fagus sylvatica L.) trees of different crown classes (dominant, co-dominant, intermediate, suppressed), aged 30 in average, was selected and felled in 1996-1997 in a compartment of the state forest of Hesse (NE France). The objective of the study was to establish equations relating the biomass and biomass increment of above and below-ground tree parts to easily measured tree parameters (diameter or girth at breast height in particular), and then to use these relations at the stand level to compare the carbon sequestration in trees to carbon fluxes. In two papers co-authored with ecophysiologists, the carbon sequestration in trees – biomass converted to carbon mass – was favorably compared to carbon fluxes (NPP) at tree and stand levels (1, 2). A more specific paper dealing with the distribution of biomass and biomass increment in the root system divided in root categories (coarse, small and fine) was published in 2001 (3). Later on, in the period 2000-2003, an additional set of 38 beech trees (samples 3 to 7 in the data tables), aged 8-172 and of different crown classes, was selected in different compartments of the state forest of Hesse to establish generalized biomass and biomass increment equations and analyze how the distribution and allocation of biomass in trees change with age. A last paper deals with these issues and was published in 2018 (4). More informations concerning the biomass data collected on the sampled beech trees in Hesse forest can be found in the sections “Material and Methods” of the third and fourth referenced papers. Two data tables with corresponding headings tables are provided: - one for the entire tree sample (61 trees) with data on aboveground tree parts (bole, branches, twigs and leaves) and data on the root system considered as a whole for a subsample of 40 trees ("Beech biomass sample.csv", "Beech biomass headings.xlsx") - one devoted to the subsample of 40 trees with more detailed data on the root system divided into root categories (coarse, small and fine) ("Beech root biomass sample.xlsx", "Beech root biomass headings.xlsx")
DOI: 10.15454/8ywl1t
title: RPG complété 2019 département 49

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 49. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/99slgp
title: Data for: A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population

description: This data contains some of the additional files and scripts linked to the manuscript:A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel populationPlease, read the whole manuscript for further information.contact: agnes.doligez@inra.fr
DOI: 10.15454/7yladt
title: Synthèse du séminaire « Quo vadis, la biosurveillance basée sur l’ADNe ? »

description: Synthèse des ateliers du séminaire « Quo vadis, la biosurveillance basée sur l’ADNe ? » du 12 mars 2021 (organisé par l’action européenne COST DNAqua-Net, sous l'égide d'Eco-AlpsWater et du Carnot Eau et Environnement). La Conférence Scientifique Internationale DNAQUA 2021, organisée par ce réseau du 9 au 12 mars 2021 a permis aux scientifiques et porteurs d’enjeux en Europe et au-delà d’échanger sur les dernières avancées scientifiques et les applications des méthodes basées sur l'ADN environnemental. La dernière journée de cette conférence était organisée sous forme de séminaires nationaux dans 14 pays européens, organisés chacun par une équipe nationale du réseau DNAqua-Net. Ces séminaires visaient à identifier les défis qui existent au niveau national et qui limitent l’application des méthodes basées sur l'ADN dans la gestion de l'environnement. Pour la France, ce séminaire a été organisé sous la forme d’ateliers interactifs animés par les 7 co-auteurs de cette synthèse. Différents acteurs de la filière de la gestion des milieux aquatiques (agences de l’eau, directions de l’environnement, gestionnaires de milieux aquatiques, hydrobiologistes des secteurs privés et publics), réunis en 6 groupes de 8 à 10 personnes (2 animateurs par groupe), ont eu l’occasion de débattre autour de 5 questions thématiques (2 questions par groupe). Cette synthèse a été réalisée sur la base de la transcription des échanges qui ont eu lieu au sein des 6 groupes. Elle présente donc les opinions et préoccupations des participants, mais en aucun cas un état de l’art concernant la biosurveillance basée sur l’ADNe. Néanmoins, pour ne pas laisser certaines questions ou incompréhensions en l’état, des commentaires, clairement identifiés en tant que tels, ont été ajoutés à la restitution des échanges par l’équipe organisatrice.
DOI: 10.15454/8qji30
title: Replication data for the article: "Interaction networks between spittlebugs and vegetation types in and around olive and clementine groves of Corsica; implications for the spread of Xylella fastidiosa"

description: This dataset contains all data used to perform the statistics and graphics presented in the article "Interaction networks between spittlebugs and vegetation types in and around olive and clementine groves of Corsica; implications for the spread of Xylella fastidiosa" Mesmin et al. (2022). Agriculture, Ecosystems Environment
DOI: 10.15454/95jtqs
title: Concentrations of fructose of the G and G+L model cakes

description: The concentrations of fructose at different times during baking of the G and G+L model cakes at 140°C/25 Hz, 140°C/50 Hz, 170°C/25 Hz, 170°C/50 Hz, 200°C/25 Hz and 200°C/50 Hz were determined after sampling, extraction and analysis by UHPLC-CAD.
DOI: 10.15454/9vwitq
title: Potential environmental impacts of water deprivation and land use for food consumption in France and Tunisia

description: The dataset concerns the environmental impacts of water consumption and land use for the production of food and beverage ingredients used for human consumption in France and in Tunisia. The origin of ingredients are considered to compute impacts on all countries of the world.
DOI: 10.15454/abcm1w
title: Background data associated with maximization of environmental impact savings potential through innovative biorefinery alternatives

description: Background data associated with maximisation of environmental impact savings potential through innovative biorefinery alternatives
DOI: 10.15454/8nz8x9
title: Data from: A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes

description: This dataset includes analysis files for the paper "A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes" now available in Genome Biology and Evolution (doi.org/10.1093/gbe/evz048). Archives can contain README files with important information, ignore them at your own risk. If you have any question, request or commentary, you can email the dataverse contact.
DOI: 10.15454/9mxck0
title: Projet Artisols - Indice de compacité des taches urbaines - 2019

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. Les taches urbaines distribuées sont caractérisées par des formes très variées. Ces formes peuvent aller d’un aspect très compacte (proche d’un disque, forme de compacité maximale sur un plan) à celui de formes très digitées ou de filaments, s’approchant de lignes plus ou moins sinueuses. Le suivi de cette dimension de compacité morphologique permet d’estimer si l’artificialisation due aux taches urbaines suit des extensions homogènes ou des extensions hétérogènes. Cet indice est calculé à l'échelle des EPCI d'Occitanie et pour l'année 2019.
DOI: 10.15454/87mzfh
title: Characterization results and raw data of Fraunhofer

description: Results and raw data of characterization of used PHAs by Fraunhofer
DOI: 10.15454/8qfdvd
title: RPG complété 2018 département 12

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 12. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020
DOI: 10.15454/9oxym5
title: RNA sequencing data for responses to drought stress and/or clubroot pathogen infection in developing seeds of Brassica napus

description: Oilseed rape (Brassica napus L.) is the third largest oil crop worldwide. Like other crops, oilseed rape faces unfavorable environmental conditions resulting from multiple and combined actions of abiotic and biotic constraints that occur throughout the growth cycle. In particular drought severely reduces seed yield but also impacts seed quality in oilseed rape. In addition, clubroot disease, caused by the pathogen Plasmodiophora brassicae, limits the yield of the Brassica crops grown in infected areas. Clubroot induces swellings or galls on the roots that decrease the flow of water and nutrients within the plant. In addition, combinations of different stresses lead to complex plant responses that can not be predicted by the simple addition of individual stress responses. Indeed, an abiotic constraint can either reduce or stimulate the plant response to a pathogen or pest. Transcriptome datasets from different conditions are key resources to improve our knowledge of environmental stress-resistance mechanisms in plant organs. Here, we describe a RNA-seq dataset consisting of 72 samples of immature B. napus seeds from plants grown under drought, infected with P. brassicae, or a combination of both stresses. A total of 67.6 Gb of transcriptome paired-end reads were filtered, mapped onto the B. napus reference genome Darmor-bzh and used for identification of differentially expressed genes and gene ontology enrichment. The raw reads are available under accession PRJNA738318 at NCBI Sequence Read Archive (SRA) repository. The dataset is a resource for the scientific community exploring seed plasticity.
DOI: 10.15454/9rlmer
title: RPG complété 2018 département 02

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 02. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/a24n4c
title: DNA metabarcoding of foliar fungal communities in an untreated vineyard

description: This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20-days old leaves in an untreated vineyard located in INRA Vilenave d'Ornon (France). The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v2 chemistry, 500 cycles). "M" samples were collected from leaves harboring symptoms of powdery mildew (Erysiphe necator), while "S" samples were collected from visually healthy leaves. "ZI" samples correspond to disease spots and "ZS" samples were taken from the healthy leaf blade of infected leaves. The "info_16S" caption is misleading, the sequences are fungal ITS sequences.
DOI: 10.15454/ajzuqn
title: Farming intensity indirectly reduces crop yield through negative effects on agrobiodiversity and key ecological functions

description: In this study we estimated direct and indirect contributions of farming intensity (soil management, pesticide use and fertilisation) and landscape heterogeneity (of semi-natural covers and crop mosaic) to cereal crop production, in 54 fields (mostly wheat), in two years (24 and 30 fields). Indirect effects were evaluated through agrobiodiversity (carabid and plant communities) and ecological functions (pollination and pest control). The data set is composed of 36 variables of ecological, landscape and farming practices measures related to the above-mentioned components. See related publication and online appendix (open access) for more details on study areas, studied fields and protocols.
DOI: 10.15454/b3fp79
title: Soil analysis

description: Soil physical and chemical properties under different plant species, along an elevational gradient at Massif de Belledonne, France
DOI: 10.15454/a1uv8q
title: Sicpa Sanitaire

description: Base de données sanitaire multi espèces des unités expérimentales animales de l'Inra.
DOI: 10.15454/a3qkzi
title: Untargeted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script

description: See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolites accumulation were expressed as Relative Units (RU). Only metabolites having values higher than 0.05 RU in at least half of the sample number were considered. For these 1624 metabolites, the accumulation was modeled with a linear model to decompose the averaged accumulation by a genotype effect plus a year effect and an interaction between the genotype and the year. Several questions were addressed with this model (i) the differences of accumulation between two genotypes averaged on years or given a year (ii) the differences of accumulation between two years averaged on genotypes or given a genotype (iii) the interactions between genotypes and years by testing if the difference of accumulation between two years in a given genotype is the same for a second genotype. All these questions were written as contrasts in the linear model. Pvalues were adjusted across the metabolites for each question to control the false discovery rate (FDR) and a difference of accumulation for a metabolite was declared significant if its adjusted pvalue was lower than 0.05
DOI: 10.15454/a4kxe7
title: Microfiltration itineraries annotated from the scientific litterature including a removal of bacteria by microfiltration, a microfiltration and a diafiltration unit operations

description: This dataset includes microfiltration itineraries annotated from the scientific litterature including a removal of bacteria by microfiltration, a microfiltration and a diafiltration unit operations
DOI: 10.15454/aafupt
title: GLOPACK anonymized raw data Delphi 3 expert interviews for the market analysis on sustainable and innovative food packaging

description: The anonymized raw data of Delphi 3 (online survey) expert interviews which have been conducted between March and May 2019 to analyse the market for sustainable and innovative packaging in the course of GLOPACK task 5.3 and also task 1.1. The raw data will be publicly accessible as soon as the results are officially published. Sensitive data and answers to open questions have been removed from the raw data set to preserve respondent anonymity.
DOI: 10.15454/adcqht
title: Calcul d'indicateurs agroécologiques

description: Ce dataset se compose de trois fichiers : "FlorealData" qui est une base de données qui regroupe 768 espèces prairiales de Midi Pyrénées avec leurs attributs issus de la phytosociologie et de l’écologie d’une part et d’une approche fonctionnelle des végétations pour l’agronomie d’autre part. Ces attributs permettent grâce à "FlorealIndices" de calculer des indices agronomiques et écologiques nécessaires à une meilleure gestion agroécologique des prairies permanentes. FlorealIndices nécessite d'avoir un relevé botanique complet (relevé phytosociologique de végétation). "Lisez moi" est une aide pour utiliser FlorealIndices. Ces indices sont pour la plupart d’entr’eux, suffisamment génériques pour être utilisés dans d’autres régions françaises. FlorealData est une base de données évolutive et nous donnons les règles de construction de chaque attribut afin que les futurs utilisateurs puissent compléter la liste pour de nouvelles espèces rencontrées.
DOI: 10.15454/aiygxo
title: Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays"

description: For many years it was believed that only amino acids, dipeptides and tripeptides could be absorbed and reach the bloodstream. Nowadays, the bioavailability of oligopeptides is also being considered, requiring further research. Hence, in this pilot study, the activity of the brush border enzymes on undigested (WPH) and digested (ID) whey hydrolysates and the absorption of the resultant peptides through the proximal jejunum of a 7-week old piglet in Ussing chamber model was investigated. Among all samples, 884 oligopeptides were identified. The brush border peptidase activity was intense in the first 10 min of the experiment generating several new peptides in the apical compartment. Within ID, 286 peptides were detected in the basolateral compartment after 120 min of experiment originating from β-lactoglobulin (60%) and β-casein (20%). Nevertheless, only 0.6 to 3.35% of a specific peptide could pass through the epithelial barrier and reach the basolateral compartment. The present study showed for the first time the ex-vivo transepithelial jejunum absorption of whey oligopeptides. It also confirmed the proteolytic activity of brush border enzymes on these oligopeptides, representing an important step towards the bioavailability of these peptides with biofunctional potential. Data from this dataset were acquired on a Qexactive mass spectrometer coupled to a NanoRSLC liquid chromatography with a Proxeon Electrospray interface.
DOI: 10.15454/aw4qbx
title: CANOPY-A_Grignon_2013-2014_AGRONOMIE

description: Données expérimentales issues de l'essai CANOPY-A conduit à Grignon en 2013-2014 par l'UMR AGRONOMIE sur 4 génotypes de colza x 2 doses d'azote. L'essai était commun avec l'UMR ECOSYS.
DOI: 10.15454/b3w0os
title: Leaf economics and slow-fast adaptation across the geographic range of Arabidopsis thaliana

description: Growth, morpho-physiological and life-history traits, at both the leaf and whole-plant levels, of 378 natural accessions of Arabidopsis thaliana.
DOI: 10.15454/bneusm
title: Cartographie de l'occupation ancienne des sols du massif des Pyrénées

description: Cartographie de l'occupation ancienne du sol du massif des Pyrénées réalisée à partir de la digitalisation des minutes de cartes d'Etat Major.
DOI: 10.15454/8j2o5c
title: Raw data and scripts for: Microbial colonization of tannin-rich tropical plants: interplay between degradability, methane production and tannin disappearance in the rumen; Rira et al.

description: Raw data and scripts used for microbial data analysis in R for: Microbial colonization of tannin-rich tropical plants: interplay between degradability, methane production and tannin disappearance in the rumen
DOI: 10.15454/9wxaa9
title: RPG complété 2019 département 48

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 48. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/9xeb0t
title: RPG complété 2019 département 37

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 37. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/a7knlk
title: GrazeGrassBiodiv: set of indicators to evaluate how grazing by livestock and grassland management can help preserving biodiversity in the insect communities of grassland ecosystems

description: This dataset contains the FisPro configuration files that implement a set of indicators to evaluate how grazing by livestock and grassland management can help preserving biodiversity in the insect communities of grassland ecosystems. This implementation requires FisPro https://www.fispro.org/en/ Please read the README file for installation information.
DOI: 10.15454/abuk3t
title: O2 and CO2 permeability of self-assembled stratified polyethylene-organoclay films for food packaging applications - O2 permeability of PE-clay nanocomposite and conventional polymers in food packaging

description: value unavailable
DOI: 10.15454/aeplxs
title: RPG complété 2018 département 84

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 84. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/aqfvhu
title: Sicpa Données Communes

description: L’objectif du projet est de mettre en place un système d’informations qui gère les données communes à tous les systèmes d’informations du Cati Sicpa. Cela permettra d’avoir une gestion cohérente et centralisée de ces données à la fois sur un plan fonctionnel pour les utilisateurs et sur un plan technique pour les informaticiens du Cati Sicpa.