cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9e7bkex
title: Water chemistry and fish health effects for fathead minnow embryos exposed to sodium nitrate and matched conductivity controls for 21 days post fertilization

description: This data set describes developmental and physiological effects observed in fathead minnow embryos that were exposed to sodium nitrate or conductivity-matched controls. Exposures were conducted in the laboratory from fertilization through 21 days post-fertilization (dpf). Nitrate doses were 0, 2, 5, 10, 25, or 100 milligrams per liter nitrate-nitrogen; conductivity controls were matched to the 10 and 100 milligrams per liter nitrate-nitrogen treatments. During the experiment, we assessed heart rate and percent arrhythmic heart beats at 3 dpf, timing of hatch and inflation of the posterior and anterior swim bladders, presence of pericardial edema or scoliosis, fish metrics at 21 dpf (fish length and weight; swim bladder length, width, and volume), and mortality. Water quality data during the exposure period are also presented, and include conductivity, pH, nitrate-nitrogen, total ammonia, unionized ammonia, and dissolved oxygen.
DOI: 10.17632/gn7bxdg7sk.1
title: Behavioral genetic study of time perspectives

description: The dataset contains the data collected within the GALTON study, which was a part of a research program entitled "In search for time perspective origins: Genetic and environmental bases of subjective attitudes towards time" funded by National Science Centre, Poland (2014/13/D/HS6/02951), awarded to Maciej Stolarski. 
Participants were 411 Polish same-sex twin pairs, reared together. The participants completed a set of measures including a 64-item version of the Zimbardo Time Perspective Inventory (ZTPI), the 50 item set of International Personality Item Pool Big Five Factor Markers (IPIP-BFM-50) questionnaire (Goldberg, 1992) in the Polish adaptation by Strus et al. (2017). 
Zygosity was diagnosed by the Polish version of the Questionnaire of Twins Physical Resemblance (QTPR; Oniszczenko & Rogucka, 1996). The predictive accuracy of the scale reaches 93.9% (96.2% for monozygotic and 90% for dizygotic pairs). In the case of a discrepancy between QTPR-based and self-reported zygosity, couples were excluded from the analyses. The ultimate sample comprised 393 same-sex twin pairs, reared together. Among them 135 were classified as monozygotic (MZ) and 258 as dizygotic (DZ) twins. MZ twins (88 females, 47 males) were aged between 15 and 48 years (M=24, SD=7.1) and DZ (189 females and 69 males) were between 15 and 57 years (M=21.9, SD=5.6).
DOI: 10.5281/zenodo.5740216
title: Full-field displacements and strains obtained by digital image correlation during fatigue crack growth experiments

description: This data publication contains full-field displacements and strains obtained by 3D digital image correlation (DIC) using a GOM Aramis 12M system including three fatigue crack propagation (fcp) experiments of AA2024-T3 aluminium sheet material. The repository consists of three datasets of different experiments named S<sub>950,1.6 </sub>- MT950 specimen, 1.6 mm sheet thickness, load ratios R=0.3, 1.0 S<sub>160,2.0 </sub>- MT160 specimen, 2.0 mm sheet thickness, load ratios R=0.1, 0.25, 0.5, 0.75, 1.0 S<sub>160,4.7 </sub>- MT160 specimen, 4.7 mm sheet thickness, load ratios R=0.1, 0.25, 0.5, 0.75, 1.0 where S<sub>w,t</sub> denotes a middle tension (MT) specimen with width w and thickness t. The nodal DIC measurements at different times during the experiments are provided as .txt files we call <em>"nodemaps" </em>and stored in subfolders "<strong>Nodemaps</strong>". Each <em>nodemap</em> consists of a header containing meta data information like a running number (current stage index) or the applied force, followed by the nodal displacements and strains in tabular form. Additionally, the dataset S<sub>160,4.7</sub> contains crack path and crack tip labels for each nodemap in the subfolder "<strong>GroundTruth</strong>". The ground truth is provided as arrays of size 256x256. Each pixel of the array contains the label "2" for the class "crack tip", "1" for the class "crack path", or "0" for the class "background". These labels were created in a semi-manual fashion and can be used for machine learned crack detection using supervised training. These datasets were recently used to evaluate neural attention of convolutional neural networks trained on fatigue crack tip detection in Melching et al. (Sci Rep, 2022). Additional guidance on data loading and usage can also be found at https://github.com/dlr-wf/explainable-crack-tip-detection. The experiments S<sub>160,2.0</sub> and S<sub>160,4.7 </sub>were conducted and analysed by Strohmann et al. (FFEMS, 2021). The experiment S<sub>950,1.6</sub> was conducted and analysed by Breitbarth et al. (FFEMS, 2020).
description: {"references": ["Melching et al. (2022) Explainable machine learning for precise fatigue crack tip detection. doi:10.1038/s41598-022-13275-1", "Strohmann et al. (2021) Automatic detection of fatigue crack paths using digital image correlation and convolutional neural networks. doi:10.1111/ffe.13433", "Breitbarth et al. (2020) High-stress fatigue crack propagation in thin AA2024-T3 sheet material. doi:10.1111/ffe.13335"]}
DOI: 10.5281/zenodo.7615362
title: Data set for: Quantifying internal stress and demagnetization effects for natural multidomain magnetite and magnetite-ilmenite intergrowths

description: This data set contains the raw measurement data used for the manuscript "<em><strong>Quantifying internal stress and demagnetization effects for natural multidomain magnetite and magnetite-ilmenite intergrowths</strong></em>", submitted to the <em>Journal of geophysical research - Solid Earth</em>. The data set includes: MPMS_HighTemperature_SRW VSM_HighTemperature_SRW VSM_FORC VSM_HighTemperature_TC VSM_Orientation VSM_Preisach All VSM data files are in the format: MicroMag 2900/3900 Data Files (Series 0016.002). Both the VSM data files and the MPMS data files provide specimen information. Each file contains information on the instrument, settings, measurement, script, and the measured data.
DOI: 10.5517/cc11jd76
title: CCDC 969067: Experimental Crystal Structure Determination

description: Related Article: Fouad Mounir, Richard D. Gandour, Frank R. Fronczek|2013|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5522/04/22787348.v1
title: comparison of USAXS signal obtained with beam tracking and analyser based imaging

description: Raw image data from synchrotron experiment using analyser based imaging and beam tracking. The angular sampling of the rocking curve has a step step size of 4microradians whereas in beam tracking the pixel size was 9micrometers and the sample to detector distance was 140cm. 20 dithering steps were used for beam tracking.
DOI: 10.6084/m9.figshare.23512155.v1
title: <strong>CircaCompare analysis of canonical clock genes in the mouse liver and skin following exposure to simulated shift-work light conditions</strong>

description: <strong>CircaCompare analysis of canonical clock genes in the mouse liver and skin following exposure to simulated shift-work light conditions</strong>
DOI: 10.7267/n9h41pb9
title: Umpqua Coho Salmon Genetic Pedigree
DOI: 10.17632/h3htv4rsvj.2
title: Materials for "Indirect Discharge of Electric Field Responsible for Gamma-ray Glow Production"

description: # Materials for "Indirect Discharge of Electric Field Responsible for Gamma-ray Glow Production" 

## About
This data repository contains data and materials used for Wada et al. "Indirect Discharge of Electric Field Responsible for Gamma-ray Glow Production". If you have any questions or comments, please contact the corresponding author of the paper. 

## Contact 
Yuuki Wada (Graduate School of Engineering, Osaka University) wada (at) yuuki-wd.space
DOI: 10.17876/plate/dr.3/envelopes/109_87949
title: Digital object identifier (DOI) for the envelope 87949 in archive 109 from the APPLAUSE DR3
DOI: 10.5066/p9jqju0e
title: Debris-flow inundation and damage data from the 9 January 2018 Montecito Debris-Flow Event

description: On 9 January 2018, intense rain above Montecito, California triggered a series of debris flows from steep catchments in the Santa Ynez Mountains. These catchments were burned three weeks earlier by the 1140 km2 Thomas Fire. After exiting the mountain front, the debris flows traveled over 3 km down a series of alluvial fans, killing 23 people and damaging over 400 homes. To understand the flow dynamics and damage of the debris flows and to provide a data set for testing debris-flow runout models, we mapped the inundation characteristics of the five main debris-flow runout paths in Montecito. Here we present our map data on the boundaries of debris-flow inundation, flow depth, and deposit characteristics and link these observations to a CAL FIRE inventory of building damage. The data include geo-tagged photos of debris-flow deposits and damage throughout the runout paths. Each photo is associated with a single object in the geodatabase. Note that there are often multiple photos taken with different perspectives from the same location. The data accompany an interpretive paper published in the journal Geosphere. The full citation for this interpretive paper is: Kean, J.W., Staley, D.M., Lancaster, J.T., Rengers, F.K., Swanson, B.J., Coe, J.A., Hernandez, J.L., Sigman, A.J., Allstadt, K., and Lindsay, D.N., 2019, Inundation, flow dynamics, and damage in the 9 January 2018 Montecito debris-flow event, California, USA: Opportunities and challenges for post-wildfire risk assessment, Geosphere, v. 15, https://doi.org/10.1130/GES02048.1.
DOI: 10.5281/zenodo.7946998
title: Molecular characterization of brown carbon chromophores in atmospherically-relevant samples and their gas-particle distribution and diurnal variation in the atmosphere

description: This file include all data given in the figures in our manuscript submitted to JGR-Atmosphere
DOI: 10.17876/plate/dr.3/envelopes/109_87950
title: Digital object identifier (DOI) for the envelope 87950 in archive 109 from the APPLAUSE DR3
DOI: 10.5281/zenodo.7040223
title: Global net ecosystem exchange of CO2 inferred from the OCO-2 XCO2 retrievals (GCAS OCO-2 inversion)

description: Here is a dataset of global carbon flux estimates over 2015-2019 using the OCO-2 column-averaged dry-air mole fraction (XCO<sub>2</sub>) retrievals (ACOS XCO<sub>2</sub> v10) by the global carbon assimilation system (GCAS v2) (Jiang et al., 2021). <strong>Citations:</strong> Jiang, F. et al., 2021. Regional CO2 fluxes from 2010 to 2015 inferred from GOSAT XCO2 retrievals using a new version of the Global Carbon Assimilation System. Atmos. Chem. Phys., 21(3): 1963-1985. Jiang, F. et al., 2022. A 10-year global monthly averaged terrestrial net ecosystem exchange dataset inferred from the ACOS GOSAT v9 XCO2 retrievals (GCAS2021), Earth Syst. Sci. Data., 14, 3013–3037. He, W., Jiang, F., Ju, W., et al. Improved constraints on the recent terrestrial carbon sink over China by assimilating OCO-2 XCO<sub>2 </sub>retrievals, JGR-Atmopsheres, 2022, under review. <strong>Contacts: </strong> Wei He (weihe@nju.edu.cn); Fei Jiang (jiangf@nju.edu.cn) Note: <strong>If you want to use this dataset for your researches, please contact us in advances. </strong>Thank you!
DOI: 10.17876/plate/dr.3/envelopes/109_87951
title: Digital object identifier (DOI) for the envelope 87951 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87952
title: Digital object identifier (DOI) for the envelope 87952 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87953
title: Digital object identifier (DOI) for the envelope 87953 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87954
title: Digital object identifier (DOI) for the envelope 87954 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87955
title: Digital object identifier (DOI) for the envelope 87955 in archive 109 from the APPLAUSE DR3
DOI: 10.5281/zenodo.8170384
title: Most global gauging stations present biased estimations of total catchment discharge

description: This dataset includes the data generated for the main figures, the codes of the Mabcd model used to simulate catchment hydrological processes in this study, and the neural network model (NN2) trained to evaluate the Budyko parameter ω.
DOI: 10.6075/j0wd3z3q
title: Observations and Model Simulations from the Inner-Shelf Dynamics Experiment (ISDE)

description: The inner shelf, the transition zone between the surf zone and the mid shelf, is a dynamically complex region with the evolution of circulation and stratification driven by multiple physical processes. Cross-shelf exchange through the inner shelf has important implications for coastal water quality, ecological connectivity, and lateral movement of sediment and heat. The Inner-Shelf Dynamics Experiment (ISDE) was an intensive, coordinated, multi-institution field experiment from Sep.-Oct. 2017, conducted from the mid shelf, through the inner shelf and into the surf zone near Point Sal, CA. Satellite, airborne, shore- and ship-based remote sensing, in-water moorings and ship-based sampling, and numerical ocean circulation models forced by winds, waves and tides were used to investigate the dynamics governing the circulation and transport in the inner shelf and the role of coastline variability on regional circulation dynamics. Data archived here represent the bulk of observational and numerical modelled data collected and generated during the 2017 ISDE field program.
DOI: 10.5066/p9e4yh9r
title: Fish community assessment using environmental DNA metabarcoding data after an invasive species eradication and native restocking effort in Pinecrest Gardens, FL in 2017-18

description: Reported here are the metabarcoding read numbers and biomass data assessed from a fish community in a southern Florida pond in Pinecrest Gardens after invasive species eradication and native restocking in 2017 and 2018 in linear regression models. This dataframe contains the number of fish of each species identified, their measured lengths estimated population surface area, and the number of metabarcoding reads (with SD and COV) for each species observed from the sampling date.
DOI: 10.5281/zenodo.5829774
title: A ten-year (2010-2019) global terrestrial NEE inferred from the GOSAT v9 XCO2 retrievals (GCAS2021)

description: Top-down atmospheric inversion is one of the major methods to estimate the global NEE. Here, by assimilating the GOSAT ACOS v9 XCO<sub>2</sub> product, we generate a ten-year (2010–2019) global monthly terrestrial NEE dataset using the Global Carbon Assimilation System, version 2 (GCASv2), which is named as GCAS2021. It includes(1) monthly and annual prior and posterior NEE and OCN fluxes, and prescribed FIRE and FFC emissions in a global spatial resolution of 1°×1°; (2) globally, latitudinally, and regionally aggregated monthly and annual posterior NEE and NBE, and their uncertainties; and (3) weekly gridded ensemble members of posterior NEE and OCN fluxes. The regional fluxes are aggregated both in the TRANSCOM and RECCAP2 regions. The latitudinal fluxes are aggregated in northern mid-high latitudes (&gt; 30° N, NL), low latitudes (30° S ~ 30° N, TL), and southern middle latitudes (&lt;30° N, SL). The weekly grided ensemble members could be used for calculating the posterior uncertainties of the user's area and time scale. Combining the OCN flux, and FIRE and FFC emissions, the net biosphere flux (NBE) and atmospheric growth rate (AGR) as well as their inter-annual variabilities (IAVs) agree well with the estimates of Global Carbon Budget 2020. Regionally, GCAS2021 shows that eastern North America, Amazon, Congo Basin, Europe, boreal forests, southern China and Southeast Asia are carbon sinks, while western US, African grasslands, Brazilian plateaus and parts of South Asia are carbon sources. In the TRANSCOM land regions, the NBEs of temperate N. America, northern Africa and boreal Asia are between the estimates of CMS-Flux NBE 2020 and CT2019B, and those in temperate Asia, Europe, and Southeast Asia are consistent with CMS-Flux NBE 2020 but significantly different from CT2019B. In the RECCAP2 regions, except for Africa and South Asia, the NBEs are comparable with the latest bottom-up estimate of Ciais et al. (2021). Compared with previous studies, the IAVs and seasonal cycles of NEE of this dateset could clearly reflect the impacts of extreme climates and large-scale climate anomalies on the carbon flux. The evaluations also show that the posterior CO<sub>2</sub> concentrations at remote sites and in regional scale, as well as on vertical CO<sub>2</sub> profiles in the Asia-Pacific region and the Amazon basin, are all consistent with independent CO<sub>2</sub> measurements from surface flask and aircraft CO<sub>2</sub> observations, indicating that this dataset captures surface carbon fluxes well. We believe that this data set will contribute to regional or national-scale carbon cycle and carbon neutrality assessment, and carbon dynamics research.
DOI: 10.5281/zenodo.7180322
title: Transcription factor expression is the main determinant of variability in gene co-activity

description: <strong>Summary</strong> Co-activity scores for 343 GEUVADIS LCLs and ABC scores for 68 LCLs, of which 30 are contained in both. <strong>Project abstract</strong> Many genes are co-regulated and, when proximal, form domains of coordinated gene activity. However, the regulatory determinants of domain co-activity remain unclear. Here, we leverage human individual variation in gene expression to characterize the regulatory processes underlying the activities of such domains and systematically quantify their effect sizes. We employ transcriptional decomposition to extract from RNA expression data an expression component related to co-activity revealed by genomic positioning. This strategy reveals close to 1,500 domains of co-activity, covering most expressed genes, of which the large majority are invariable across individuals. Focusing specifically on domains with high variation in co-activity reveals that neighboring genes contained within variable co-activity domains have a higher sharing of eQTLs, a higher variability in enhancer interactions, and a specific enrichment of binding by variably expressed transcription factors. Through careful quantification of the relative contributions of regulatory activities underlying co-activity, we find transcription factor expression levels to be the main determinant of gene co-activity, indicating that distal <em>trans</em> effects contribute more than local genetic variation to individual variation in co-activity domains. <strong>Included files</strong> Co_activity_scores_343_individuals.tsv.zip - Contains co-activity scores for included individuals. Columns include chromosome, bin, start, end and one column per individual containing the co-activity score. ABC_scores_68_individuals.tsv.zip - Contains ABC scores for included individuals. Columns include chromosome, start of putative enhancer region, end of putative enhancer region, name of putative enhancer region, target gene, TSS of target gene, LCL identifier, ABC score
DOI: 10.5281/zenodo.7921892
title: Zhang-E3SMv2-MixedPhaseClouds-ARM

description: This contains the data used for the paper: Zhang et al. (2023), Evaluating EAMv2 simulated stratiform mixed-phase clouds at Northern and Southern high latitudes using ARM measurement.
DOI: 10.5281/zenodo.8199685
title: supporting information Authemayou et al. 23

description: data from Authemayou et al., 2023 (figures and tables)
DOI: 10.6073/pasta/27ec6e0d5a6cb1c663633e7b3c45912f
title: Biocomplexity at North Temperate Lakes LTER; Coordinated Field Studies: Littoral Plots 2001 - 2004

description: In 2001 - 2004 the abundance of coarse wood and other aspects of the physical structure of the littoral zone were surveyed along transects that followed the 0.5 m depth contour at 488 sites in Vilas County. These data were collected as part of the "cross-lake comparison" segment of the Biocomplexity Project (Landscape Context - Coordinated Field Studies). The study explored the links between terrestrial and aquatic systems across a gradient of residential development and lake landscape position. Specifically, this project attempted to relate the abundance of Coarse Wood in the littoral zone with abiotic, biotic and anthropogenic features of the adjacent shoreline. Each of the 488 sites was a 50 m stretch of shoreline. The transects started and ended at the beginning and end of the site; the length of each transect, therefore, varied. Logs which were at least 150 cm in length were counted; more detailed descriptions were taken of logs at least 10 cm in diameter and 150 cm long. Information on littoral and shoreline substrate was also collected. Sampling Frequency: each site sampled once Number of sites: 488 sites on 61 Vilas County lakes were sampled from 2001-2004 (approximately 15 different lakes each year; eight sites per lake).
DOI: 10.17876/plate/dr.3/envelopes/109_87956
title: Digital object identifier (DOI) for the envelope 87956 in archive 109 from the APPLAUSE DR3
DOI: 10.34740/kaggle/dsv/3559777
title: Lung Mask Image Dataset
DOI: 10.48786/edbt.2022.37
title: A Neural Approach to Forming Coherent Teams in Collaboration Networks
DOI: 10.5281/zenodo.2547638
title: Antarctic surface mass balance with the regional climate model MAR (1979–2015)

description: Outputs of the regional climate model MAR v3.6.41 for Antarctica, resolution 35km + source code

===========================================

Cécile Agosta, 23 Jan 2019 

cecile.agosta@gmail.com

===========================================

Grid specifications are given in MAR-ant35km-grid.nc (projection : EPSG 3031).

* State variables are averages of daily means:

    TT &gt; temperature (°C)

    ZZ &gt; height above sea level (m)

    UU, VV &gt; x-wind and y-wind in the stereographic grid (m s-1)

    UV &gt; wind speed (m s-1)

State variables ending with z (e.g. UUz) are interpolated on fixed altitude levels above the ground.

State variables ending with p (e.g. UUp) are interpolated on fixed pressure levels.

* SMB components are summed: kg m-2 month-1 for montly files, kg m-2 year-1 for annual files, kg m-2 year-1 for clim files

    snf &gt; snowfall

    rnf &gt; rainfall

    rof &gt; run-off

    sbl &gt; sublimation/condensation

    smb = snf + rnf - sbl - rof

    mlt &gt; snowmelt

    rfz &gt; refreezing

If you use this data, please cite the final accepted version of this article:

Agosta C., Amory C., Kittel C., Orsi A., Favier V., Gallée H., van den Broeke M.R., Lenaerts J.T., van Wessem J.M., & Fettweis X. (in review, 2018). Estimation of the Antarctic surface mass balance using MAR (1979-2015) and identification of dominant processes. <em>The Cryosphere Discussions</em>, 1–22, doi:10.5194/tc-2018-76.

Please contact me if you need other outputs (variables/daily or hourly time steps)
description: {"references": ["Agosta C., Amory C., Kittel C., Orsi A., Favier V., Gall\u00e9e H., van den Broeke M.R., Lenaerts J.T., van Wessem J.M., & Fettweis X. (in review, 2018). Estimation of the Antarctic surface mass balance using MAR (1979-2015) and identification of dominant processes. The Cryosphere Discussions, 1\u201322, doi:10.5194/tc-2018-76."]}
DOI: 10.5281/zenodo.7554242
title: Rainfall Rescue data: version 2.0.0

description: Version 2.0.0 of the data from the RainfallRescue.org project, with many more stations added compared to v1. More than 4.9 million monthly rainfall amounts, taken across the UK and Ireland between 1677 and 1960, transcribed by 16,000 volunteers.