cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21629386.v1
title: Additional file 7 of Gene transcriptional profiles in gonads of Bacillus taxa (Phasmida) with different cytological mechanisms of automictic parthenogenesis

description: Additional file 7: Supplementary Table S5. Results of the branch-site analysis using codeml of the candidate genes for parallel sequence modifications. The analysis was carried out separately for each species and using the alignment generated by PSI-Coffee; additional cross-validation was carried out using aBSREL. The abbreviations used are the same as in the other Supplementary tables.
DOI: 10.6084/m9.figshare.21629389
title: Additional file 8 of Gene transcriptional profiles in gonads of Bacillus taxa (Phasmida) with different cytological mechanisms of automictic parthenogenesis

description: Additional file 8: Supplementary Table S6. GO-terms enrichment analysis of candidate genes for species-specific instances of positive selection in the two parthenogens. The abbreviations used are the same as in the other Supplementary tables.
DOI: 10.6084/m9.figshare.21629389.v1
title: Additional file 8 of Gene transcriptional profiles in gonads of Bacillus taxa (Phasmida) with different cytological mechanisms of automictic parthenogenesis

description: Additional file 8: Supplementary Table S6. GO-terms enrichment analysis of candidate genes for species-specific instances of positive selection in the two parthenogens. The abbreviations used are the same as in the other Supplementary tables.
DOI: 10.6084/m9.figshare.21629419
title: Additional file 1 of Health effects of Indigenous language use and revitalization: a realist review

description: Additional file 1.
DOI: 10.6084/m9.figshare.21629419.v1
title: Additional file 1 of Health effects of Indigenous language use and revitalization: a realist review

description: Additional file 1.
DOI: 10.25442/hku.21626417
title: Supporting data for "aquatic food webs in anthropogenic landscapes"

description: Dataset deposited here were collected during my PhD study at HKU and has been presented in thesis titled ‘AQUATIC FOOD WEBS IN ANTHROPOGENIC LANDSCAPES’. I curated food-web statistics and geogroaphical information on 27 published stream food webs, examined gut contents of five predators in four Hong Kong streams, and generated isotopic and fatty acid data for food web construction in three marshlands in Hong Kong and three shrimp ponds in Mai Po Nature Reserve. <br> See README for details. Also refer to my thesis for methodological details. <br>
DOI: 10.25442/hku.21626417.v1
title: Supporting data for "aquatic food webs in anthropogenic landscapes"

description: Dataset deposited here were collected during my PhD study at HKU and has been presented in thesis titled ‘AQUATIC FOOD WEBS IN ANTHROPOGENIC LANDSCAPES’. I curated food-web statistics and geogroaphical information on 27 published stream food webs, examined gut contents of five predators in four Hong Kong streams, and generated isotopic and fatty acid data for food web construction in three marshlands in Hong Kong and three shrimp ponds in Mai Po Nature Reserve. <br> See README for details. Also refer to my thesis for methodological details. <br>
DOI: 10.6084/m9.figshare.21629438
title: Supplementary material - Articles used

description: A list of articles used for Chapter 2
DOI: 10.6084/m9.figshare.21629438.v1
title: Supplementary material - Articles used

description: A list of articles used for Chapter 2
DOI: 10.5281/zenodo.7354733
title: Data for "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach"

description: Data in the form of Table 1 in the accompanying paper "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach" at arXiv.org See the README file on the usage
DOI: 10.5281/zenodo.7354732
title: Data for "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach"

description: Data in the form of Table 1 in the accompanying paper "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach" at arXiv.org See the README file on the usage
DOI: 10.6084/m9.figshare.16534956
title: Chlamydial infection-dependent synthesis of sphingomyelin as a novel anti-chlamydial target of ceramide mimetic compounds

description: These data are original and unprocessed data performed by Keigo Kumagai. <br> Fig2: Files to show the anti-chlamydial effects of HPA-12-IR and CERT inhibitors are included. Fig3: Two Excel files to calculate the relative ATP level of the drug-treated cells are included. Fig4: Files to show the relative increase of NBD-signal in each inclusion during the incubation are included. Fig5: Files to demonstrate the relative SM synthesis with NBD-ceramide or isotope-labeled serine are included. Fig6: Files to show the anti-chlamydial effects of the drugs in the presence or absence of the serum are included. Fig7: Files to demonstrate the production of PC-HPA-12 by the cidSM-synthesis are included. Fig8: Files to show the chlamydial changes by the treatment with the drugs are included.
DOI: 10.6084/m9.figshare.16534956.v1
title: Chlamydial infection-dependent synthesis of sphingomyelin as a novel anti-chlamydial target of ceramide mimetic compounds

description: These data are original and unprocessed data performed by Keigo Kumagai. <br> Fig2: Files to show the anti-chlamydial effects of HPA-12-IR and CERT inhibitors are included. Fig3: Two Excel files to calculate the relative ATP level of the drug-treated cells are included. Fig4: Files to show the relative increase of NBD-signal in each inclusion during the incubation are included. Fig5: Files to demonstrate the relative SM synthesis with NBD-ceramide or isotope-labeled serine are included. Fig6: Files to show the anti-chlamydial effects of the drugs in the presence or absence of the serum are included. Fig7: Files to demonstrate the production of PC-HPA-12 by the cidSM-synthesis are included. Fig8: Files to show the chlamydial changes by the treatment with the drugs are included.
DOI: 10.14278/rodare.1972
title: Data publication: Synchronizing the helicity of Rayleigh-Bénard convection by a tide-like electromagnetic forcing

description: Package of raw and refined data underlying the figures of the connected paper. Included is also the software used to generate the figures.
DOI: 10.5281/zenodo.7370977
title: Extended Wikipedia Web Traffic Daily Dataset (with Missing Values)

description: This dataset contains 145063 time series representing the number of hits or web traffic for a set of Wikipedia pages from 2015-07-01 to 2022-06-30. This is an extended version of the dataset that was used in the Kaggle Wikipedia Web Traffic forecasting competition. For consistency, the same Wikipedia pages that were used in the competition have been used in this dataset as well. The colons (:) in article names have been replaced by dashes (-) to make the .tsf file readable using our data loaders. <br> The data were downloaded from the Wikimedia REST API. According to the conditions of the API, this dataset is licensed under CC-BY-SA 3.0 and GFDL licenses.
description: {"references": ["Wikimedia Analytics Team, 2022. Wikistats: pageview complete dumps. URL https://dumps.wikimedia.org/other/pageview_complete"]}
DOI: 10.5281/zenodo.7370976
title: Extended Wikipedia Web Traffic Daily Dataset (with Missing Values)

description: This dataset contains 145063 time series representing the number of hits or web traffic for a set of Wikipedia pages from 2015-07-01 to 2022-06-30. This is an extended version of the dataset that was used in the Kaggle Wikipedia Web Traffic forecasting competition. For consistency, the same Wikipedia pages that were used in the competition have been used in this dataset as well. The colons (:) in article names have been replaced by dashes (-) to make the .tsf file readable using our data loaders. <br> The data were downloaded from the Wikimedia REST API. According to the conditions of the API, this dataset is licensed under CC-BY-SA 3.0 and GFDL licenses.
description: {"references": ["Wikimedia Analytics Team, 2022. Wikistats: pageview complete dumps. URL https://dumps.wikimedia.org/other/pageview_complete"]}
DOI: 10.57745/opdlhd
title: BioNLP-ST-2013_Gene_Regulation_Network.zip

description: Full training and development dataset. Unlabelled test dataset. Evaluation software.
DOI: 10.25909/638471211a2e6
title: Arid Recovery 2018/19 western quoll microstallite genotypes

description: Microsatellite genotypes for 12 founders and 23 offspring from Arid Recovery Reserve, sampled 2019
DOI: 10.6084/m9.figshare.21533073
title: Data of characterizations of the study;Data of experiments of the study;supplementary materials for the manuscript from Activation of bisulfite by LaFeO<sub>3</sub> loaded on red mud for degradation of organic dye

description: YaoLi-Data of characterizations-ESM1;YaoLi-Data of experiments-ESM2;YaoLi-Data of experiments-ESM3
DOI: 10.6084/m9.figshare.21533073.v2
title: Data of characterizations of the study;Data of experiments of the study;supplementary materials for the manuscript from Activation of bisulfite by LaFeO<sub>3</sub> loaded on red mud for degradation of organic dye

description: YaoLi-Data of characterizations-ESM1;YaoLi-Data of experiments-ESM2;YaoLi-Data of experiments-ESM3
DOI: 10.5281/zenodo.7176452
title: A System Dynamics model of the rural socio-environmental system of the SW Messinia and Gialova lagoon

description: This System Dynamics model describes interactions between different sectors of the rural social ecological system and the land sea interactions of Southwest Messinia and Gialova coastal lagoon, in Greece. The model allows simulation of the current situation as well as scenario projections and possible policy solutions identified through a participatory process with stakeholders from all involved sectors. Model output is presented as impacts on multiple Key Performance Indicators of sustainability including environmental, social and economic aspects. Through these simulations, the model aims to support integrated planning and better informed decision making.<br> The structure of the System Dynamics model was co-developed through a series of consecutive workshops with representatives from all sectors, which fostered shared learning and validation throughout the development process Throughout the participatory process which also included, expert interviews and questionnaires between 2018 and 2022, representatives from all sectors identified the main interactions between sectors and developed a vision for the area that could help stir the SW Messinia into a sustainable and resilient pathway. The Mental maps of the interactions between sectors that were developed during this participatory process formed the starting point for the System Dynamics model and can be found here.
DOI: 10.5281/zenodo.7371038
title: Extended Wikipedia Web Traffic Daily Dataset (without Missing Values)

description: This dataset contains 145063 time series representing the number of hits or web traffic for a set of Wikipedia pages from 2015-07-01 to 2022-06-30. This is an extended version of the dataset that was used in the Kaggle Wikipedia Web Traffic forecasting competition. For consistency, the same Wikipedia pages that were used in the competition have been used in this dataset as well. The colons (:) in article names have been replaced by dashes (-) to make the .tsf file readable using our data loaders. The original dataset contains missing values. They have been simply replaced by zeros. The data were downloaded from the Wikimedia REST API. According to the conditions of the API, this dataset is licensed under CC-BY-SA 3.0 and GFDL licenses.
description: {"references": ["Wikimedia Analytics Team, 2022. Wikistats: pageview complete dumps. URL https://dumps.wikimedia.org/other/pageview_complete"]}
DOI: 10.5281/zenodo.7371037
title: Extended Wikipedia Web Traffic Daily Dataset (without Missing Values)

description: This dataset contains 145063 time series representing the number of hits or web traffic for a set of Wikipedia pages from 2015-07-01 to 2022-06-30. This is an extended version of the dataset that was used in the Kaggle Wikipedia Web Traffic forecasting competition. For consistency, the same Wikipedia pages that were used in the competition have been used in this dataset as well. The colons (:) in article names have been replaced by dashes (-) to make the .tsf file readable using our data loaders. The original dataset contains missing values. They have been simply replaced by zeros. The data were downloaded from the Wikimedia REST API. According to the conditions of the API, this dataset is licensed under CC-BY-SA 3.0 and GFDL licenses.
description: {"references": ["Wikimedia Analytics Team, 2022. Wikistats: pageview complete dumps. URL https://dumps.wikimedia.org/other/pageview_complete"]}
DOI: 10.34740/kaggle/dsv/4606190
title: AutoXGB
DOI: 10.17632/jv9rftdmst.1
title: RPA Survey data from Carnation Creek - Carina Helm MSc Research.

description: This repository contains the data used for analysis in the manuscript "Rapid and objective characterization of channel morphology in a small, forested stream" submitted to Earth Surface Dynamics by Helm et al., (2020). It contains the raw spatial data used to conduct the analysis (raster files of bed elevation, grain size and bathymetry) as well as extracted channel variables for the PCA, and the results of a clustering analysis on channel form. A sample of a dense point cloud generated from the RPA data is also included.
DOI: 10.5281/zenodo.3752613
title: DeepBedMap: A super-resolution neural network created bed topography of Antarctica

description: Going beyond BEDMAP2 using a super resolution deep neural network. deepbedmap_v1.1.0.zip: Python code for the DeepBedMap Super-Resolution Generative Adversarial Network. deepbedmap_dem.tif: Digital Elevation Model (250 m spatial resolution) in GeoTiff format, using Antarctic Polar Stereographic Projection (EPSG:3031). srgan_generator_model_weights.npz: The Generator neural network weights/parameters as a NumPy zip file.
DOI: 10.5281/zenodo.6817130
title: [Dataset] Determining the origin of tidal oscillations in the ionospheric transition region with EISCAT radar and global simulation data

description: Preprocessed data
DOI: 10.5285/0f7e4448-ac5f-478d-83b4-408edc244f3b
title: Seismic Data Archive for the Unsettled Earth Project, Bristol, England, UK

description: This dataset contains broadband seismic data collected between May 2018 and January 2019 as part of the Unsettled Earth project funded by the University of Bristol's Brigstow Institute. The seismic station was deployed in one of the turrets of the Wills Memorial Building Tower, Bristol.
DOI: 10.17632/kn5f76dzwd.5
title: Ferns of Mashpi

description: This data summarizes the data of a first survey of terrestrial ferns at Mashpi Biodiversity Reserve, an Ecuadorian Chocó forest relict, one of the most biodiverse areas in the world.  We include tree tables, the first one includes the species with the vouchers, the second one includes a species with the abundance of each species per plot. The third one contains measurements of the leaf length and leaf thickness of several leaf samples of 28 species.

It is also included another file with an R script to calculate the abundance of each species per plot, the total abundance per plot,  the species richness per plot and diversity index per plot.
DOI: 10.3886/e111705v1
title: Data and Code for: State of American Entrepreneurship

description: Assessing the state of American entrepreneurship requires not simply counting the quantity but also the initial quality of new ventures. Combining comprehensive business registries and predictive analytics, we present estimates of entrepreneurial quantity and quality from 1988-2014. Rather than a secular pattern of declining business dynamism, our quality-adjusted measures follow a cyclical pattern sensitive to economic and capital market conditions. Consistent with the role of investment cycles as a driver of high-growth entrepreneurship, our results highlight the role of economic and institutional conditions as a driver of both initial entrepreneurial quality and the scaling of new ventures over time.
description: other; For more information, please refer to...<br><br>The State of American Entrepreneurship: New Estimates of the Quality and Quantity of Entrepreneurship for 32 US States, 1988-2014By Jorge Guzman and Scott Stern<br>
description: All business who are legally registered in any of 32 US states between 1988 and 2014.
DOI: 10.5281/zenodo.7024171
title: Combined_ST_SM_Changes_Impacts SH LE observations

description: Here the data were used to evaluate latent and sensible heat flux data of ERA5-Land, along with the other evaluations against in situ observations.
DOI: 10.5281/zenodo.7024791
title: Combined_ST_SM_Changes_Impacts soil temperature observations

description: Observations of soil temperature used to evaluate ERA5-Land soil temperature
DOI: 10.5281/zenodo.7030324
title: Combined_ST_SM_Changes_Impacts Soil moisture observations

description: There are 956 observational soil moisture data files with detailed information about the files in ReadMe.txt.
DOI: 10.6084/m9.figshare.12800909.v1
title: Raw_data_Rendueles&Velicer.xlsx

description: <b>BACKGROUND: Evolution in a selective environment often latently generates phenotypic change manifested only later in different environments, but the complexity of behaviour important to fitness in the original environment might influence the character of such latent evolution. Using <i>Myxococcus xanthus, </i>a bacterium possessing two motility systems differing in effectiveness on hard vs. soft surfaces,<i></i>here we test i) whether and how evolution while swarming on one surface – the selective surface – latently alters motility on the alternative surface type and ii) whether patterns of such latent phenotype evolution depend on the complexity of ancestral motility, specific ancestral motility genotypes and/or the selective surface of evolution. We analyse an experiment in which populations<i></i>established from three ancestral</b><b>genotypes – one with both motility systems intact and two others with one system debilitated – </b><b>evolved </b><b>while swarming across either hard or soft agar in six evolutionary treatments. We then compare motility-phenotype patterns across selective vs alternative surface types. </b><b>RESULTS: Latent motility evolution was pervasive but varied in character as a function of the presence of one vs two functional motility systems and, for some individual-treatment comparisons, the specific ancestral genotype and/or selective surface. Swarming rates on alternative vs selective surfaces were positively correlated generally among populations with one functional motility system but not among those with two. This suggests that opportunities for pleiotropy and epistasis generated by increased genetic complexity underlying behavior can alter the character of latent phenotype evolution. No tradeoff between motility performance across surface types was detected in the dual-system treatments, even after adaptation on a surface on which one motility system dominates strongly over the other in driving movement, but latent phenotype evolution was instead idiosyncratic in these treatments. We further find that the magnitude of stochastic diversification at alternative-surface swarming among replicate populations greatly exceeded diversification of selective-surface swarming within some treatments and varied across treatments. </b><b>CONCLUSION: Collectively, our results suggest that increases in the genetic and mechanistic complexity of behavior can increase the complexity of latent evolution outcomes and illustrate that diversification manifested during evolution in one environment can be augmented greatly by diversification of latent phenotypes manifested later.</b>
DOI: 10.6084/m9.figshare.5459299
title: PPG-BP Database

description: The peer-reviewed paper associated with this dataset has now been published in Scientific Data, and can be accessed here: https://www.nature.com/articles/sdata201820. Please cite this when using the<br> dataset. <br> Open clinical trial data provide a valuable opportunity for researchers worldwide to assess new hypotheses, validate published results, and collaborate for scientific advances in medical research. Here, we present a health dataset for the non-invasive detection of cardiovascular disease (CVD), containing 657 data records from 219 subjects. The dataset covers an age range of 20–89 years and records of diseases including hypertension and diabetes. Data acquisition was carried out under the control of standard experimental conditions and specifications. This dataset can be used to carry out the study of photoplethysmograph (PPG) signal quality evaluation and to explore the intrinsic relationship between the PPG waveform and cardiovascular disease to discover and evaluate latent characteristic information contained in PPG signals. These data can also be used to study early and noninvasive screening of common CVD such as hypertension and other related CVD diseases such as diabetes.
DOI: 10.17632/tmwrd45m7x.2
title: Panama City, Panama road traffic indicidents 2014-2022  - Social Media Dataset (in Spanish)

description: 
The raw data set is composed of 200,410 Tweets in Spanish language from the road traffic social reporting account @traficocpanama (1_raw_data_200410.csv). Tweets were collected between January 2014 and May 2022. The data were collected using a the Python Programming language with modules Selenium, and Tweepy.


This raw data set was first processed by keeping tweets with at least 3 words and then stop words (see stop-words.csv) were removed. Which brought the number of tweets to 192,707 (2_preliminar_data_192707.csv). 

The second cut-off was made via a machine learning classification model to sort tweets that had a relation with  1) Accidents (in Spanish: Choques, accidentes, colisiones, vuelcos, atropellos; in English: Crashes, accidents, collisions, overturns, run-overs). 2) Obstacles (in Spanish: Tranques, huelgas, motines, paros, protestas, trabajos en vía, cierres; in English: Traffic jams, strikes, riots, stoppages, protests, road works, closures). 3) Dangers (in Spanish: Incendios, inundaciones, lluvias fuertes; in English: Fires, floods, heavy rains), whichs brought the Tweet number  to 120,000 tweets (3_sample_class_120000.csv).

Finally, a machine learning incident categorization model was trained on 51,000 Tweets between categories: accident, obstacle, danger (4_sample_categ_51000.csv)


This data set is intended for academic use and research in natural language processing (NLP) in Spanish. Specially, for road traffic incident detection.
DOI: 10.6069/vfwj-jf14
title: Low- and Middle-Income Country MCV1 Coverage Geospatial Estimates 2000-2019

description: "Estimates were produced for first-dose coverage of measles-containing vaccine (MCV1) at the 5x5 km-level in 101 low- and middle-income countries (LMICs) between 2000-2019. These estimates were produced using data on vaccination coverage and geographical locations from 354 household-based surveys.

This dataset includes the following:

- GeoTIFF raster files for pixel-level estimates of MCV1 coverage
- CSV files of aggregated MCV1 coverage estimates for each country at the first and second administrative unit divisions
- Code files used to generate the estimates"