cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/h464gsf77t
title: development preterm infant

description: The primary hypothesis of this research was to ascertain whether specific neonatal and maternal factors significantly influence the neurodevelopmental outcomes in preterm infants. It was hypothesized that variables such as gestational age, birth weight, and specific neonatal complications would have a notable impact on the developmental trajectories of these infants, as measured through the Bayley Scales of Infant and Toddler Development. The dataset is a rich compilation of data gathered from a retrospective cohort study conducted on preterm infants admitted to the NICU at Ghaem Hospital, Mashhad, between 2016 and 2020. It encompasses a wide range of variables that provide a comprehensive view of both maternal and neonatal factors. Notable findings from the data indicate significant associations between several neonatal and maternal factors and developmental outcomes in preterm infants. Variables such as Intrauterine Growth Restriction (IUGR), pneumothorax, and Bronchopulmonary Dysplasia (BPD) were found to be significantly associated with impairments in various developmental domains. Furthermore, the data revealed that longer durations of hospitalization and oxygen therapy were linked with negative developmental outcomes in different domains.To interpret the data, researchers can analyze the associations between the various recorded variables and the developmental outcomes measured through the Bayley Scales. The dataset includes detailed categorizations within developmental domains, offering insights into the severity and type of developmental delays experienced by the infants. The data can be utilized to conduct further research into the complex interplay of biological and environmental factors influencing preterm infant development. It can serve as a foundational resource for developing targeted early intervention strategies, thereby aiding in optimizing developmental outcomes for this vulnerable population. Researchers aiming to use this data should approach it with a comprehensive analytical strategy, considering the multifaceted nature of the variables involved. It would be beneficial to employ statistical analyses such as logistic regression to identify potential associations and influences between the variables. By providing a detailed overview of both neonatal and maternal factors, the dataset promises to be a significant asset in fostering further research in the field of neonatal healthcare, potentially paving the way for advancements in preventative and interventional strategies to enhance the quality of life for preterm infants.
DOI: 10.6084/m9.figshare.3850755.v1
title: A study on the correlation between tree proximity, tree diameter, and tree condition

description: <b>Meta data:</b><br><b>Distance from tree to the next recorded tree: </b>Continuous - Using the transect measuring tape that was laid in a straight line from the edge of the woodlot to center of the woodlot, every instance an adult tree was encountered within 2m of the transect, the distance from this tree to the next adult tree to be studied was recorded. Distance was measured by the same person each time and measured from the point on the transect that lined up with the center point of each trunk. An adult tree was<b> </b>defined as any tree that was at least 4m tall<b>.<br><br>Diameter of tree: </b>Continuous<b> - </b>the same person measured the diameter of each tree by holding up a measuring tape straight against the trunk at their breast height<b>.<br><br>Condition of tree: </b>Ordinal - The same person assessed the condition of each tree by observing the trunk and canopy and then assigning<b> </b>one of three numbers: 0 for a dead tree, 1 for a living tree, and 2 for a tree with a huge green canopy<b>.<br></b><br><b>Methods:</b> <br>In order to assess the relationship between tree proximity, diameter, and condition, measurement of these three variables was taken for 20 adult trees that were located within 2m of a 30m transect tape that was placed in a straight line from the edge of the woodlot to the center of the woodlot. The same person was responsible for measuring the same variable for all 20 trees. Using the laid transect tape, the distance between trees was measured from the point on the transect that lined up with the center of the first trunk, to the point on the transect that lined up with the center of the trunk of the next tree to be studied. The diameter of each tree was measured at breast height by holding up measuring tape straight across the trunk. The condition of each tree was evaluated by looking at the trunk and canopy of the tree and assigning a number to represent if it was dead(0), living(1), or had a huge, green canopy(2). <br><br><b>Study Site:</b><br>43°46'48.2"N 79°29'48.3"W.York University Campus, Danby Woods. Woodlot. <br>Weather: Very hot and sunny for the first 2 hours and then it became cloudy and it sprinkled, while still remaining warm, for the remaining hour of study. <br><br><b>Hypothesis:</b> <br>There is a correlation between the proximity of trees in a woodlot and their diameter and condition. This is because trees that grow in close proximity will share the same resources and will be affected by the same environmental conditions. In addition, trees will compete with each other for these shared resources (i.e. water, nutrients, etc.) when growing near each other. Lastly, different sized trees will be able to sustain the growth of different sized canopies. <br><br><b>Predictions:</b><br>1) Trees that grow in close proximity will be in similar condition.<br>2) Trees that are located closer together will have smaller diameters.<br>3) Trees with a larger diameter will be in better condition (fuller/larger canopies).<br>
DOI: 10.6084/m9.figshare.4244798.v1
title: BIO205 2016 Tut0102 Census 3 Data.xlsx

description: <br>Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.7688093.v1
title: Genomic_Epidemiology_of_Syphilis_&_Evolution_of_Macrolide_Resistance__v7.Rcode

description: R Code and source data for Beale et al (2019) "Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages
DOI: 10.17632/x5h2skp4zz
title: Supplemental material - Curettage plus one or two cycles of cryosurgery for basal cell carcinoma with clinically nodular features - a prospective randomized controlled trial

description: The dataset presented here is the supplemental material of the letter: "Curettage plus one or two cycles of cryosurgery for basal cell carcinoma with clinically nodular features - a prospective randomized controlled trial" published in the Journal of the American Academy of Dermatology (JAAD). It contains a detailed method section, a table on times for wound healing, a figure on the non-inferiority result and the Consort checklist.
DOI: 10.17632/xh7vvty9zt
title: Annotated Corpus for the Detection of Arguments and Non-Arguments for Spanish texts

description: The corpus contains 2875 annotated messages texts in Spanish. In addition, the annotated corpus includes the texts in which all three annotators labeled the argumentative and non-argumentative texts: 1366 (48%) were marked as an Argument and 1509 (52%) as Non-Argument.
DOI: 10.6084/m9.figshare.12444176.v1
title: Summary data on the use of music interventions in the treatment of Parkinson's Disease: A systematic review

description: This dataset is summary data from a systematic review of literature on music interventions (MI) in Parkinson's Disease (PD). The goal of the review was to identify how MIs are used in PD. This summary data is compiled from searches in PubMed, Scopus, and Web conducted in April 2020. <br><br>It is related to the following code:Spreadborough, Kristal (2020) Music and Parkinson's Disease (Version 1.0) [Source code]. https://github.com/KristalSpreadborough/MusicAndParkinsons<br>
DOI: 10.6084/m9.figshare.19193498.v1
title: Electric control of a canted-antiferromagnetic Chern insulator

description: Original data for "<b>Electric control</b><b> </b><b>of a canted-antiferromagnetic Chern insulator"</b>
DOI: 10.6084/m9.figshare.20477256.v1
title: Spatial dynamic metabolomics identifies metabolic trajectories during human kidney epithelium development

description: Accumulating evidence demonstrates important roles for metabolism in cell fate determination. However, It is a challenge to assess metabolism at a spatial resolution that acknowledges both heterogeneity and cellular dynamics in its tissue microenvironment. Using a multi-omics platform to study cell-type specific dynamics in metabolism in complex tissues, we describe the metabolic trajectories during nephrogenesis in the developing human kidney. Exploiting <em>in situ </em>analysis of isotopic labeling, a shift from glycolysis towards fatty acid β-oxidation was observed during the differentiation from the renal vesicle, towards the S-shaped body and the proximal tubules. In addition, we show that hiPSC-derived kidney organoids are characterized by a metabolic immature phenotype, that fails to use mitochondrial long-chain fatty acids for energy metabolism. Furthermore, supplementation of butyrate enhances tubular epithelial differentiation and maturation in cultured kidney organoids. Our findings highlight the relevance of understanding metabolic trajectories to efficiently guide stem cell differentiation.
DOI: 10.6084/m9.figshare.28189277.v1
title: repeatbuyer_ecommerce_indo.csv

description: The dataset is taken in Indonesia used for a research about repeat buyer classification to support recommender system. The method is used for the experiment is logistic regression and kl divergence.
DOI: 10.6084/m9.figshare.28944839.v1
title: raw data.zip

description: Data from a cell experiment for breast cancer migration studies
DOI: 10.6084/m9.figshare.29126396.v2
title: <b>STRING Network Analysis</b>

description: This file contains the protein-protein interaction analysis dataset that was used in the unpublished manuscript and was further analyzed with the STRING online software.Significantly upregulated mRNAs (2,777 genes; p &lt; 0.05) identified by bulk RNA-seq were analyzed using the STRING module in Cytoscape v.2.2.0 (Institute for System Biology; WA; USA). A cluster network was constructed using the MCL algorithm with a granularity parameter of 4, followed by filtering nodes with mcl.cluster &gt; 10. The resulting 1,848 nodes were processed through STRING v12.0 (Swiss Institute of Bioinformatics; Lausanne; Switzerland) to generate a protein–protein interaction (PPI) network, incorporating evidence from text mining, genomic neighborhood, experimental data, curated databases, co-expression, gene fusion, and co-occurrence, with a minimum confidence score threshold of 0.40. Network modules were defined using the DBSCAN clustering algorithm with an ε parameter of 2. Cluster 1, representing the largest gene set (101 genes), was further analyzed by sorting the top 20 nodes with the highest node degree, resulting in a network comprising 101 nodes and 756 edges. Global network metrics indicated an average node degree of 15, a local clustering coefficient of 0.600, and a PPI enrichment p-value of &lt; 1 × 10⁻¹⁶. The average values of coexpression, experimentally determined interactions, automated text mining, and combined scores were calculated.
DOI: 10.6084/m9.figshare.29136590.v1
title: <b>Data for sulfur isotopes from the lunar farside reveal</b><b> a global evaporation signiture following the gaint impact</b>

description: Table S1. Mineral composition of clinopyroxene and plagioclase in CE-6 basalt and crustal clasts.Table 2. Mineral abundance of CE-6 basalt clasts, NWA 12008 and NWA 14526 analysed by TIMA.Table S3. Composition of sulfide in Chang'e-6 basalt clasts, highland clasts and breccias.Table S4. δ34SV-CDT value of troilites in CE-6 basalt clasts, breccias and highland clasts, and lunar meteorites NWA 14526 and NWA 12008.Table S5. 34SV-CDT value of reference materials.
DOI: 10.6084/m9.figshare.27101344.v1
title: Supplementary Material for: Fifteen years of neonatal Therapeutic Hypothermia: clinical trends show unchanged post-rewarming outcomes despite reduction in HIE severity

description: INTRODUCTION Hypoxic-ischemic encephalopathy (HIE) affects 1-2 per 1000 births and is associated with mortality and long-term neurodevelopmental challenges. At present, therapeutic hypothermia (TH) is the only neuroprotective intervention for these infants. This study examines whether HIE severity, clinical management during TH and post-rewarming outcomes have changed since its introduction 15 years ago. 

METHODS Neonatal characteristics, HIE severity, management during TH and post-rewarming MRI of all infants with HIE undergoing TH between 2008-2023 were compared across three five-year epochs. Linear regression was used to estimate annual changes over time.

RESULTS In total, 252 infants underwent TH. Median GA (39.5 weeks), birth weight (3376 grams) and time to start TH (4.25 hours) remained stable over time. Apgar score at 5 minutes (p=0.031) and lowest pH &lt;1h postpartum (p=0.020) increased over time. Thompson score at 1-3h decreased across epochs (p=0.046). There was an increase in percentage with normal-mild aEEG background patterns on admission (p=0.041) and a decrease in aEEG-confirmed seizures (p&lt;0.001) and anti-seizure medication (p&lt;0.001). Inotropic support decreased (p=0.007), and use of invasive mechanical ventilation decreased over the last five years. Mortality (28.6%) and post-rewarming composite adverse outcome (i.e. neonatal mortality and/or adverse MRI score) (37.9%) remained unchanged. Number of infants seen at 2-year follow-up increased (p&lt;0.001). 

CONCLUSION Over the last 15 years we treated more infants with milder HIE, as indicated by lower Thompson and milder aEEG scores, and the need for invasive cardiorespiratory support declined. However, there were no improvements in composite adverse outcome (mortality and/or adverse MRI score).
DOI: 10.6084/m9.figshare.27103225.v2
title: Automatic Instantiation of Assurance Cases from Patterns Using Large Language Models

description: This repository contains the resources used for the research work on the Automatic Instantiation of Assurance Cases from Patterns Using Large Language Models<br>
DOI: 10.6084/m9.figshare.7371179.v1
title: Haemochromatosis in UK Biobank - Pilling et al. 2019 BMJ

description: Supplementary Tables for UK Biobank study of Haemochromatosis published in the BMJ by Pilling et al. 2019<br>
DOI: 10.17632/jmd84c6f64
title: Lateral variations in bulk density and porosity of the upper crust of the Moon

description: We determined variations in bulk density using most recent GRAIL gravity model GL1500 (Park et al., 2015) together with LOLA derived topography (Smith et al., 2017), both available on the Planetary Data System (https://pds.nasa.gov). Using the estimated bulk densities in combination with grain densities estimated from surface composition, the porosity of the upper crust was determined. Each grid point with a spacing of 0.75 deg was calculated using a circular analysis region of 3 deg radius. The grids are equally sampled following the sample theorem of Driscoll and Healy (1994).
DOI: 10.17632/mm65dh657w
title: Data on the factors drive the decision of rural people to move into the city

description: This data shows the different socioeconomic  characteristics of the farm households that drive their one or more family members  to move into the city. Data were gathered by field survey using survey questionnaire.  This data is used to analyze the different factors which influence the farm household member to move into the city. SPSS 20 and STATA  11 software were used for analyzing the data
DOI: 10.6084/m9.figshare.28379396.v1
title: Data in "The Evolution of Hydrodynamic Intensities and Sediment Erosion along Submerged Aquatic Vegetation"

description: The data from Figure 3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 15, 16, 17, and 18 in "The Evolution of Hydrodynamic Intensities and Sediment Erosion along Submerged Aquatic Vegetation" are uploaded. Figure 1, 2, 10, and 14 are sketches of experimental setup or gray-scale images and can be found in the paper directly.
DOI: 10.6084/m9.figshare.28468313.v1
title: Supplementary material for the article "Identification of relevant research topics based on pooled bibliometric data of the International Journal of Hydrogen Energy publications for 2022–2024 from The Lens and ScienceDirect platforms"

description: The article is scheduled to be published in 2025 in the online scientific journal Actual Problems of Oil and Gas (https://oilgasjournal.ru).Abstract. Background. Hydrogen is given the role of a clean energy carrier in the energy transition. Objective. To identify relevant research topics based on pooled bibliometric data of the International Journal of Hydrogen Energy publications from 2022–2024, collected from The Lens and ScienceDirect platforms. Materials and methods. 10,928 bibliometric records were exported from The Lens database and 10,857 records were exported from ScienceDirect. Keywords clustering and visual data analysis were performed using the following programs and algorithms: VOSviewer, Scimago Graphica, Inkscape, FP-growth utility. Results. The study showed the feasibility of merging bibliometric records from the open platforms ScienceDirect and The Lens, which complement each other. The “Fields of Study” data of The Lens was interpreted as system keywords similar to Scopus Index Keywords. The possibility of using “Fields of Study” data in a method similar to bibliographic coupling is shown. The practicality of using an alluvial diagram to show the co-occurrence of the four terms was demonstrated. The study also emphasizes the advisability of joint use of VOSviewer and Scimago Graphica programs for complex visualization of bibliometric analysis results. The study identified two dominant publication topics in the International Journal of Hydrogen Energy for 2022–2024, which can be described in terms of: “Catalysis, Hydrogen, Physical_chemistry, Chemical_engineering, Nanotechnology, Electrochemistry, Organic_chemistry, Materials_science” and “Electrical_engineering, Hydrogen_production, Renewable_energy, Environmental_science, Hydrogen_economy, Hydrogen, Engineering”. Conclusions. Joint use of metadata of different open abstract databases allows to compensate partial representation of their data.
DOI: 10.17632/85kp39n3nr
title: Supplementary Material – ECZTRA 5 Manuscript

description: Supplementary Information to accompany and support the manuscript: Tralokinumab Does Not Impact Vaccine-induced Immune Responses: Results From a 30-week, Randomized, Placebo-controlled Trial in Adults With Moderate-to-severe Atopic Dermatitis.
DOI: 10.6084/m9.figshare.12763931.v1
title: Supplementary Material for: Inpatient Care during the COVID-19 Pandemic: A Survey of Italian Physicians

description: <b><i>Background:</i></b> Coronavirus disease 2019 (COVID-19) is a potentially fatal disease that is of great global public health concern. <b><i>Objective:</i></b> We explored the clinical management of inpatients with COVID-19 in Italy. <b><i>Methods:</i></b> A self-administered survey was sent by email to Italian physicians caring for adult patients with COVID-19. A panel of experts was selected according to their clinical curricula and their responses were analyzed. <b><i>Results:</i></b> A total of 1,215 physicians completed the survey questionnaire (17.4% response rate). Of these, 188 (15.5%) were COVID-19 experts. Chest computed tomography was the most used method to detect and monitor COVID-19 pneumonia. Most of the experts managed acute respiratory failure with CPAP (56.4%), high flow nasal cannula (18.6%), and non-invasive mechanical ventilation (8%), while an intensivist referral for early intubation was requested in 17% of the cases. Hydroxychloroquine was prescribed as an antiviral in 90% of cases, both as monotherapy (11.7%), and combined with protease inhibitors (43.6%) or azithromycin (36.2%). The experts unanimously prescribed low-molecular-weight heparin to patients with severe COVID-19 pneumonia, and half of them (51.6%) used a dose higher than standard. The respiratory burden in patients who survived the acute phase was estimated as relevant in 28.2% of the cases, modest in 39.4%, and negligible in 9%. <b><i>Conclusions:</i></b> In our survey some major topics, such as the role of non-invasive respiratory support and drug treatments, show disagreement between experts, likely reflecting the absence of high-quality evidence studies. Considering the significant respiratory sequelae reported following COVID-19, proper respiratory and physical therapy programs should be promptly made available.
DOI: 10.6084/m9.figshare.21708044.v1
title: An Exploration of Naturalistic Psychedelic use

description: This data set is comprised of data collected for my Master's thesis investigating the long-term effects of psychedelic use. Data was collected using an online survey (<em>N </em>= 603) and covers a range of factors related to psychedelic use. These include questions related to demographics, drug use history (frequency and intensity of use), purposes for using psychedelics, long-term effects, as well as challenging, negative, and positive psychedelic experiences.
DOI: 10.6084/m9.figshare.3806538.v1
title: Supplementary Material for: Serum Potassium Levels and Mortality in Hemodialysis Patients: A Retrospective Cohort Study

description: <i>Background:</i> Hyperkalemia is common in patients receiving maintenance hemodialysis. However, few studies have examined the association between serum potassium level and mortality. <i>Methods:</i> This study used annual cohorts of hemodialysis patients during 2007-2010. To determine hyperkalemia prevalence, monthly hyperkalemia was defined as serum potassium level ≥5.5 mEq/l; prevalence was calculated as a ratio of hyperkalemia episodes to follow-up time, reported separately by long and short interdialytic interval. To determine the impact of hyperkalemia on mortality, patients in the 2010 cohort were followed from first potassium measurement until death or a censoring event; hyperkalemia was defined, sequentially, by potassium levels 5.5-6.0 mEq/l at 0.1 mEq/l intervals. Time-dependent Cox proportional hazards modeling was used to estimate the association between hyperkalemia and mortality. <i>Results:</i> The 4 annual cohorts ranged from 28,774 to 36,888 patients. Mean age was approximately 63 years, about 56% were men, 51% were white and 44% had end-stage renal disease caused by diabetes. Hyperkalemia prevalence was consistently estimated at 16.3-16.8 events per 100 patient-months. Prevalence on the day after the long interdialytic interval was 2.0-2.4 times as high as on the day after the short interval. Hyperkalemia, when defined as serum potassium ≥5.7 mEq/l, was associated with all-cause mortality (adjusted hazards ratio (AHR) 1.13, 95% CI 1.01-1.28, p = 0.037, vs. &lt;5.7 mEq/l) after adjustment. AHRs increased progressively as the hyperkalemia threshold increased, reaching 1.37 (95% CI 1.16-1.62, p &lt; 0.0001) for ≥6.0 mEq/l. <i>Conclusions:</i> The long interdialytic interval was associated with increased likelihood of hyperkalemia. Hyperkalemia was associated with all-cause mortality beginning at serum potassium ≥5.7 mEq/l; mortality risk estimates increased ordinally through ≥6.0 mEq/l, suggesting a threshold at which serum potassium becomes substantially more dangerous.
DOI: 10.17632/45vmp75htk
title: Vertex model of convergent extension integrating cell crawling and junction contraction

description: We developed a novel vertex model of convergent extension that includes both cell crawling and junction contraction. A detailed description is provided in the manuscript titled "Convergent extension requires adhesion-dependent biomechanical integration of cell crawling and junction contraction", CELL-REPORTS-D-21-06089.