cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3846759.v2
title: Data of Several Species of Trees Collected in York University's Woodlot

description: The data obtained was from the woodlots of York University in Toronto. It was a forested area on the outskirts of the university and there was a lot of green canopy. There were different species of trees were present for observation and data recording. The data was collected in pairs, one person recording the numbers and measurements, and the other using the tools in order to obtain the measurements. The tools used were transect measuring tapes and normal measuring tapes. The data was collected from 10 arbitrary trees from the edge to the centre of the woodlot. Walking in a straight line, every tree encountered that was twice the data recorder’s height was recorded. The dichotomous tree guide was used to compare and match the tree leaves according to its species. Data from the species of Sugar Maple, Red Oak, Black Cherry, Bass Wood, Red Pine and White Spruce were collected. The following variables recorded were the species of the tree, the diameter of the trunk, the distance from the previous tree and the condition of the tree itself, using numbers 0,1,and 2. Each tree was labelled one to ten in order to chronologically keep track of the data and recordings. The species of the tree (Sugar Maple, Red Oak, Black Cherry, Bass Wood, Red Pine and White Spruce) was obtained by matching the leaves to the dichotomous tree guide provided in the lab manual. The diameter was the measurement of the tree trunk at breast height, measured in centimetres using the normal measuring tape. The distance was recorded in feet and stated the length from the previous tree to the current one being recorded using the transect measuring tape. The condition of the tree was measured using numbers, 0 representing dead, 1 representing living & small canopy, and 2 representing living & large canopy.
DOI: 10.6084/m9.figshare.21688058.v1
title: MRIO 2008-2018

description: Inter country input output table including 10 sectors and 272 NUTS 2 regions of 28 countries<br>
DOI: 10.6084/m9.figshare.28706744.v1
title: Contam_Control_Filtered.xlsx

description: Contamination list for filtering data for analysis presented in Naumann et al
DOI: 10.5281/zenodo.15315725
title: Error Analysis of the Lightning VHF Interferometer Considering Meteorological factors

description: The data supports the manuscript entitled “Error Analysis of the Lightning VHF Interferometer Considering Meteorological factors”. MATLAB can open these *.mat and *.fig file, just drag them into MATLAB command window. 

There is a readme information in each *.mat file, the the *.fig file is the related figure.

The data can be used freely for scientific purposes with the appropriate citation.
DOI: 10.5281/zenodo.15315726
title: Error Analysis of the Lightning VHF Interferometer Considering Meteorological factors

description: The data supports the manuscript entitled “Error Analysis of the Lightning VHF Interferometer Considering Meteorological factors”. MATLAB can open these *.mat and *.fig file, just drag them into MATLAB command window. 

There is a readme information in each *.mat file, the the *.fig file is the related figure.

The data can be used freely for scientific purposes with the appropriate citation.
DOI: 10.6084/m9.figshare.24131775.v1
title: Supplementary Material for: Clinicoradiological Factors Predicting Lymph Node Metastasis in Patients with Nonfunctioning Pancreatic Neuroendocrine Neoplasms: A Systematic Review and Meta-Analysis

description: Introduction: Lymph node metastasis of nonfunctioning pancreatic neuroendocrine neoplasms (pNENs) potentially leads to poor survival. Given the contradictory results in the literature regarding factors associated with lymph node metastasis of nonfunctioning pNENs, we conducted a systematic review and meta-analysis to determine the preoperative predictors of lymph node metastasis. Methods: Original studies reporting factors associated with lymph node metastasis in patients with nonfunctioning pNENs were identified in PubMed, EMBASE, and Cochrane Library databases, and data from eligible studies were analyzed using random-effects meta-analysis to obtain pooled estimates of odds ratios (OR) and their 95% confidence intervals (CI). Results: Eleven studies were included. Tumor size (&gt;2 cm or &gt;2.5 cm; OR, 5.80 [95% CI, 4.07–8.25]) and pancreatic head location (OR, 1.75 [95% CI, 1.05–2.94]) were significant preoperative predictors of lymph node metastasis. Age (OR, 1.07 [95% CI, 0.68–1.68]) and male sex (OR, 1.12 [95% CI, 0.74–1.70]) were not significantly associated with lymph node metastasis. Conclusions: A large tumor size and pancreatic head location can be useful for planning optimal treatment in patients with nonfunctioning pNENs.
DOI: 10.6084/m9.figshare.12444791.v1
title: Code, instances and solutions for the Generalized Shortest Path Tour Problem with Time Windows

description: Instances.7z contains the instances generated and used for testing in the paper "A Generalized Shortest Path Tour Problem with Time Windows". <br> The optimal solutions are given in the file optimal-solutions.csv.<br> Code.zip contains the source codes used.
DOI: 10.6084/m9.figshare.12448823.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-7954 to JVASP-8655)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.16802503.v4
title: Lévy-noise versus Gaussian-noise-induced Transitions in the Ghil-Sellers Energy Balance Model

description: We provide here the majority of the dataset, as well as some scripts used for the figures of the paper:<br> <br> "Lévy-noise versus Gaussian-noise-induced Transitions in the Ghil-Sellers Energy Balance Model" by Lucarini V., Serdukova L, and Margazoglou G. (2021)<br> <br> Some datafiles are sufficient to reproduce directly the figures, while others are the raw data one needs to reproduce the figures using the methodologies described in the paper.<br> <br> For more information or any question, or access to the particular scripts<br> we implemented to produce the plots, please contact: <br> Valerio Lucarini at v.lucarini@reading.ac.uk or Larissa Serdukova at l.i.serdukova@reading.ac.uk or Georgios Margazoglou at g.margazoglou@reading.ac.uk <br> Thank you!
DOI: 10.6084/m9.figshare.27158394.v1
title: Workshop_Multispecies City Lab_2024_Melbourne.

description: The <i>Multispecies City Lab</i> was a workshop organized in Melbourne/Narrm in 2024 at the Faculty of Education at the University of Melbourne. This workshop invited people living in Melbourne to re-imagine the city as a place where humans and other-than-humans collaborate, a place where magpies, the Yarra River, gum trees, algae, or fungi thrive. What would this multispecies city look, smell, or sound like? The Multispecies City Lab challenged today's urban structures and encourages you to speculate on possibilities for urban living beyond the human.
DOI: 10.6084/m9.figshare.13213544.v1
title: Supplementary Material for: Expression of β-1,4-galactosyltransferases during Aging in <b><i>Caenorhabditis elegans</i></b>

description: <b><i>Background:</i></b> Altered plasma activity of β-1,4-galac­tosyl­transferases (B4GALTs) is a novel candidate biomarker of human aging. B4GALT1 is assumed to be largely responsible for this activity increase, but how it modulates the aging process is unclear at present. <b><i>Objectives:</i></b> To determine how expression of B4GALT1 and other B4GALT enzymes changes during aging of an experimentally tractable model organism, <i>Caenorhabditis elegans</i>. <b><i>Methods:</i></b> Targeted analysis of mRNA levels of all 3 <i>C. elegans</i> B4GALT family members was performed by qPCR in wild-type and in long-lived <i>daf-2</i> (insulin/IGF1-like receptor)-deficient or germline-deficient animals. <b><i>Results:</i></b> <i>bre-4</i> (<i>B4GALT1/2/3/4</i>) is the only B4GALT whose expression increases during aging in wild-type worms. In addition, <i>bre-4</i> levels also rise during aging in long-lived <i>daf-2</i>-deficient worms, but not in animals that are long-lived due to the lack of germline stem cells. On the other hand, expression of <i>sqv-3 (B4GALT7)</i> and of <i>W02B12.11 (B4GALT5/6)</i> appears decreased or constant, respectively, in all backgrounds during aging. <b><i>Conclusions:</i></b> The age-dependent <i>bre-4</i> mRNA increase in <i>C. elegans</i> parallels the age-dependent B4GALT activity increase in humans and is consistent with <i>C. elegans</i> being a suitable experimental organism to define potentially conserved roles of B4GALT1 during aging.
DOI: 10.6084/m9.figshare.28432187.v2
title: GenBank Files

description: GenBank file for synKmI full chromosome design
DOI: 10.25381/cput.24572917.v2
title: Multi-vendor based busbar protection scheme for transmission networks

description: <strong>Ethical Ref. #: 2020FEREC-STD-040</strong>
<br>
Busbars are the common points of connection for all incoming and outgoing feeders, thus, busbars are critical components of transmission networks. The operation of busbars is affected by faults occurring on the busbar or faults that are carried through from the incoming and outgoing feeders. A fault in the incoming or outgoing feeders of a busbar can result in the system becoming unstable or experiencing a blackout, which requires a fast-operating protection scheme to quickly isolate the faulty section. This will minimize damage to faulty equipment and prevent interruption of supply in other healthy sections of the network. A busbar protection scheme must meet the basic protection requirements of the electrical system. The requirements include speed to detect and isolate faults, reliability to ensure the security of supply, sensitivity in detecting faults, and the scheme must always ensure that the power system is stable. These requirements are necessary for detecting busbar faults early, and to isolate the faulty equipment. Communication systems of intelligent electronic devices play a huge role in the performance of busbar protection schemes. They determine the effectiveness of the protection scheme in terms of detecting and isolating busbar faults. A literature survey has revealed that multiple proposed algorithms of busbar protection schemes have encountered a common problem of achieving interoperability between intelligent electronic devices produced by different vendors. This affects the performance of busbar protection schemes. This dissertation focuses on achieving interoperability between multi-vendor intelligent electronic devices “SEL and ABB”. The research study aimed to improve the performance of busbar protection schemes by introducing the IEC 61850 standard to enhance the communication system performance between the devices to reduce the fault clearance time. The research study was conducted by implementing hardware-in-the-loop (HIL) testing using a real-time digital simulator (RTDS). A laboratory-scale test bench was developed to achieve interoperability between the IEDs SEL-487B and REF615. A fault condition was simulated, and the behaviour of the protection scheme was analysed.
DOI: 10.6084/m9.figshare.22223854.v1
title: New Forest Map 2020 in China

description: The present study produced a new reference forest map for China from three land cover products for 2020. These datasets included the World Cover 2020 (ESA-2020), ESRI 2020 Land Cover (ESRI-2020), and the GlobeLand30 version of V2020 (GLC-2020). Within the production of the reference forest map for China, a pixel was assumed to represent forest when the same pixel among multiple land cover products showed forest properties, thereby decreasing the uncertainties of classification of forests at a large scale.
DOI: 10.6084/m9.figshare.28647371.v1
title: Supplementary Material for: Zigui-Changqi decoction against premature ovarian insufficiency by moderating autophagy via EGFR/ERBB2/IL6/AKT1 signals

description: Background: Autophagy defect has been detected in premature ovarian insufficiency (POI) patients. 
Aim: To evaluate the efficacy and explore the mechanism of Zigui-Changqi Decoction (ZCD) in the treatment of POI.
Material and methods: Rat model of POI was established to evaluate the efficacy of ZCD on serum hormone levels, ovarian index, and ovarian cell apoptosis. The effect of ZCD on the autophagy of granulosa cell was assessed. Network pharmacology was used to predict potential targets of ZCD against POI.
Results: ZCD attenuated tripterygium glycosides-induced damage to ovarian tissues in rats by improving ovarian index, moderating serum hormone levels, inhibiting ovarian cell apoptosis, and increasing the number of ovarian stromal cells. ZCD moderated the expression of autophagy-related markers, including BECN1, p62 and LC3. Through network pharmacological analysis, the predicted hub genes were EGFR, ERBB2, AKT1, IL6, PTEN, and TP53. After molecular docking and detection of cell expression levels, EGFR, ERBB2, AKT1, and IL6 were inhibited by ZCD, as well as mTORC1. 
Conclusion: ZCD can ameliorate POI, maybe by moderating autophagy via EGFR/ERBB2/IL6/AKT1 signals.
DOI: 10.6084/m9.figshare.6492425.v6
title: Supplementary Material for: Primate Brain Anatomy New Volumetric MRI Measurements for Neuroanatomical Studies

description: Since the publication of the primate brain volumetric dataset of Stephan and colleagues in the early 1980s, no major new comparative datasets covering multiple brain regions and a large number of primate species have become available. However, technological and other advances in the last two decades, particularly magnetic resonance imaging (MRI) and the creation of institutions devoted to the collection and preservation of rare brain specimens, provide opportunities to rectify this situation. Here, we present a new dataset including brain region volumetric measurements of 39 species, including 20 species not previously available in the literature, with measurements of 16 brain areas. These volumes were extracted from MRI of 46 brains of 38 species from the Netherlands Institute of Neuroscience Primate Brain Bank, scanned at high resolution with a 9.4-T scanner, plus a further 7 donated MRI of 4 primate species. Partial measurements were made on an additional 8 brains of 5 species. We make the dataset and MRI scans available online in the hope that they will be of value to researchers conducting comparative studies of primate evolution.
DOI: 10.6084/m9.figshare.25806862.v1
title: <b>Modeling plant phenotypic plasticity and its underlying genetic architecture: a comparative study</b>

description: Investigating how different methods for measuring phenotypic plasticity in maize under drought conditions can reveal the genetic basis of crop adaptation. We assess the efficacy of these methods in identifying genetic regions linked to phenotypic plasticity, particularly focusing on genotype-by-environment interactions. Our goal is to uncover key traits and associated QTLs that can enhance breeding efforts for climate-resilient crops.
DOI: 10.6084/m9.figshare.20222295.v1
title: Tensile data at different strain rates and temperatures

description: Uniaxial tensision tests are conducted on az31b magnesium sheets at high temperatures
DOI: 10.6084/m9.figshare.1575833.v1
title: eUCP AND ELECTRONIC COMMERCE INVESTMENTS: e-SIGNATURE AND PAPERLESS FOREIGN TRADE

description: The developments in electronic documents that are seen in recent years suggest that use of paper will be completely abandoned in all business processes after some time. As an advantage of the developments in information systems, the use of electronic documents has become widespread and even compulsory in some applications. Although it is one of the areas where the benefits of electronic documents will be seen, the use of electronic documents in foreign trade has not become so popular. As the paper-based processes still prevail, it seems that there is a need for a radical and comprehensive change in this area. Although a long time has passed after the publication of eUCP, it has not produced the expected effect, which indicates the necessity of introducing new payment methods to replace letters of credit. In this article, a general evaluation was made within the framework of the latest developments and the possible effects of electronic documents on foreign trade were discussed with a proposal of a new payment method based on a single document.
DOI: 10.6084/m9.figshare.21976670.v1
title: Gonococcus_RNA-seq RawCount and NormalizedCount.xlsx

description: RNA-seq row counts and normalized counts of a clinical isolate of <em>N. gonorrhoeae</em>, after induction of the stringent response by serine hydroxamate and/or thiostrepton treatment. <br> <br>
DOI: 10.6084/m9.figshare.25293310.v2
title: Rugby base model

description: This dataset contains the result of fitting a Bayesian model using PyMC to results of the Six Nations Championship.The Six Nations Championship is a yearly rugby competition between Italy, Ireland, Scotland, England, France and Wales. Fifteen games are played each year, representing all combinations of the six teams. This example uses and includes results from 2014 - 2017, comprising 60 total games. It models latent parameters for each team's attack and defense hierarchically, with an extra global parameter for the home field advantage.See https://github.com/arviz-devs/arviz_example_data/blob/main/code/rugby/rugby.ipynb for the whole model specification.
DOI: 10.6084/m9.figshare.4970054.v1
title: Supplementary Material for: Protective Function of Ahnak1 in Vascular Healing after Wire Injury

description: <b><i>Aim:</i></b> Vascular remodeling following injury substantially accounts for restenosis and adverse clinical outcomes. In this study, we investigated the role of the giant scaffold protein Ahnak1 in vascular healing after endothelial denudation of the murine femoral artery. <b><i>Methods:</i></b> The spatiotemporal expression pattern of Ahnak1 and Ahnak2 was examined using specific antibodies and real-time quantitative PCR. Following wire-mediated endothelial injury of Ahnak1-deficient mice and wild-type (WT) littermates, the processes of vascular healing were analyzed. <b><i>Results:</i></b> Ahnak1 and Ahnak2 showed a mutually exclusive vascular expression pattern, with Ahnak1 being expressed in the endothelium and Ahnak2 in the medial cells in naïve WT arteries. After injury, a marked increase of Ahnak1- and Ahnak2-positive cells at the lesion site became evident. Both proteins showed a strong upregulation in neointimal cells 14 days after injury. Ahnak1-deficient mice showed delayed vascular healing and dramatically impaired re-endothelialization that resulted in prolonged adverse vascular remodeling, when compared to the WT littermates. <b><i>Conclusion:</i></b> The large scaffold and adaptor proteins Ahnak1 and Ahnak2 exhibit differential expression patterns and functions in naïve and injured arteries. Ahnak1 plays a nonredundant protective role in vascular healing.
DOI: 10.6084/m9.figshare.28014866.v2
title: Magnesium modulates phospholipid metabolism to promote bacterial phenotypic resistance to antibiotics

description: High magnesium levels enhance Vibrio alginolyticus antibiotic resistance by altering fatty acid and glycerophospholipid metabolism, changing membrane composition to reduce drug uptake.
DOI: 10.6084/m9.figshare.22293151.v2
title: Propuesta de un programa combinado de meditación y ejercicio aeróbico para mujeres víctimas de violencia de género

description: Nuestra propuesta de intervención aspira a comprender el envejecimiento desde una perspectiva de género, dando visibilidad a mujeres mayores que son víctimas de violencia de género y que presentan heridas psicológicas de un maltratador y la indiferencia de una sociedad. La futura propuesta de intervención intentará dar respuesta al Trastorno de Estrés Postraumático (TEPT), ansiedad y depresión que muchas mujeres adultas y mayores presentan al vivir situaciones o sucesos de violencia dentro de la pareja y que castigan a las mujeres a una vida subordinada a estas secuelas. La propuesta va dirigida a mujeres mayores de 55 años, pertenecientes al Instituto Andaluz de la mujer (IAM) del Ayuntamiento de Dos hermanas, que presenten TETP, ansiedad o depresión. El programa de intervención es una combinación de ejercicio mental y físico basado en la Capacitación Mental and Physical (MAP) y consta de una duración de 6 semanas con dos sesiones a la semana y una sesión sin supervisión. Cada sesión consta de una meditación inicial sentados de 20 minutos, una caminata de meditación de 10 minutos y una parte de ejercicio aeróbico de 30 minutos al 60- 80% de frecuencia máxima cardiaca, dividiendo el programa en tres fases: la fase de acondicionamiento, la fase de mejora y la fase de mantenimiento. Con este programa de intervención físico y mental se pretende mejorar la calidad de vida y el bienestar físico y mental de mujeres víctimas de violencia de género incidiendo con la actividad física en su TEPT, ansiedad y depresión
DOI: 10.6084/m9.figshare.16652104.v1
title: Social interactions affect discovery processes:insights from online music platforms.

description: The data to reproduce the results of the research.
DOI: 10.25403/upresearchdata.24973911.v1
title: The vibration sensor on railway lines

description: This dataset is about using vibration sensing as a preventative maintenance strategy on the railway lines. Railway lines are suspectable to faults because of continuous movement of train on the track. These faults on track increase vibration frequencies on the track and if not corrected they will lead to catastrophic failures. Vibration sensors are used to detect the track frequencies, the higher the frequencies the more the deterioration of the track. Data is then retrieved from the sensor and analyzed if the data shows higher frequencies than the threshold, then appropriate actions are taken immediately.Installation of the vibration sensors on the track are done by using maintenance and system engineering principles these principles are used also in utilization on the sensors.
DOI: 10.6084/m9.figshare.24878322.v1
title: Supplementary Material for: Relapsing peritoneal dialysis-associated peritonitis due to Kocuria rhizophila: A case report

description: Introduction: The Kocuria genus, encompassing gram-positive coccoid actinobacteria belonging to the Micrococcaceae family, has recently been discovered residing on the human skin and oral flora. Reports of Kocuria-associated infections in humans have been scarce. Herein, we present the first case of relapsing peritoneal dialysis (PD)-associated peritonitis caused by Kocuria rhizophila. 
Case presentation: The patient, a 78-year-old male, presented with turbid effluent peritoneal dialysis fluid, accompanied by an elevated white blood cell count of 253 cells/μL, of which 59% were neutrophils. A diagnosis of PD-associated peritonitis was established, leading to the initiation of intraperitoneal administration of ceftazidime and vancomycin. Subsequently, Kocuria rhizophila was identified through the bacterial culture of the dialysate. On the seventh day of initial treatment, the antibiotic regimen was changed to penicillin G, and the patient underwent a three-week course of antibiotics. However, one week after discharge, the patient's dialysis fluid became cloudy once again, with subsequent detection of Kocuria rhizophila in the fluid culture. Ultimately, the decision was made to remove the patient's PD catheter and transition to hemodialysis. 
Conclusion：PD-associated peritonitis attributed to Kocuria species may be considered a potential risk for recurrence.