cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6600380.v1
title: Additional file 8: of Characterization of the Populus Rab family genes and the function of PtRabE1b in salt tolerance

description: Table S3. Expression data of 27 PtRab paralogous pairs used for correlation analysis. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.14464701
title: Output files(part2)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464701.v1
title: Output files(part2)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.10270400
title: MOESM1 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 1: Table S1. Characteristics of the studies included in the meta-analysis. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.10270400.v1
title: MOESM1 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 1: Table S1. Characteristics of the studies included in the meta-analysis. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.10270406
title: MOESM1 of A logistic regression analysis of risk factors in ME/CFS pathogenesis

description: Additional file 1. Participant Questionnaires.
DOI: 10.6084/m9.figshare.10270406.v1
title: MOESM1 of A logistic regression analysis of risk factors in ME/CFS pathogenesis

description: Additional file 1. Participant Questionnaires.
DOI: 10.6084/m9.figshare.10270409
title: MOESM2 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 2: Table S2. Genotype and allele distribution in the meta-analysis for the rs1042713 polymorphism. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.10270409.v1
title: MOESM2 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 2: Table S2. Genotype and allele distribution in the meta-analysis for the rs1042713 polymorphism. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.10270415
title: MOESM3 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 3: Table S3. Genotype and allele distribution in the meta-analysis for the rs1042714 polymorphism. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.10270415.v1
title: MOESM3 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 3: Table S3. Genotype and allele distribution in the meta-analysis for the rs1042714 polymorphism. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.10270424
title: MOESM4 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 4: Table S4. Genotype and allele distribution in the meta-analysis for the rs1042711 polymorphism. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.10270424.v1
title: MOESM4 of Association of Î²2-adrenergic receptor gene polymorphisms (rs1042713, rs1042714, rs1042711) with asthma risk: a systematic review and updated meta-analysis

description: Additional file 4: Table S4. Genotype and allele distribution in the meta-analysis for the rs1042711 polymorphism. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7648994
title: Identify gene expression pattern change at transcriptional and post-transcriptional levels

description: Gene transcription is regulated with distinct sets of regulatory factors at multiple levels. Transcriptional and post-transcriptional regulation constitute two major regulation modes of gene expression to either activate or repress the initiation of transcription and thereby control the number of proteins synthesized during translation. Disruptions of the proper regulation patterns at transcriptional and post-transcriptional levels are increasingly recognized as causes of human diseases. Consequently, identifying the differential gene expression at transcriptional and post-transcriptional levels respectively is vital to identify potential disease-associated and/or causal genes and understand their roles in the disease development. Here, we proposed a novel method with a linear mixed model that can identify a set of differentially expressed genes at transcriptional and post-transcriptional levels. The simulation and real data analysis showed our method could provide an accurate way to identify genes subject to aberrant transcriptional and post-transcriptional regulation and reveal the potential causal genes that contributed to the diseases.
DOI: 10.6084/m9.figshare.7648994.v1
title: Identify gene expression pattern change at transcriptional and post-transcriptional levels

description: Gene transcription is regulated with distinct sets of regulatory factors at multiple levels. Transcriptional and post-transcriptional regulation constitute two major regulation modes of gene expression to either activate or repress the initiation of transcription and thereby control the number of proteins synthesized during translation. Disruptions of the proper regulation patterns at transcriptional and post-transcriptional levels are increasingly recognized as causes of human diseases. Consequently, identifying the differential gene expression at transcriptional and post-transcriptional levels respectively is vital to identify potential disease-associated and/or causal genes and understand their roles in the disease development. Here, we proposed a novel method with a linear mixed model that can identify a set of differentially expressed genes at transcriptional and post-transcriptional levels. The simulation and real data analysis showed our method could provide an accurate way to identify genes subject to aberrant transcriptional and post-transcriptional regulation and reveal the potential causal genes that contributed to the diseases.
DOI: 10.6084/m9.figshare.6600434
title: Additional file 1: of Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

description: Table S1. Primers used in qPCR validation. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6600434.v1
title: Additional file 1: of Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

description: Table S1. Primers used in qPCR validation. (XLSX 11 kb)
DOI: 10.6073/pasta/85f0b7bac992dd0196cabfafea333d7b
title: FCE Redlands 2001 Land Use, Miami-Dade County, South Florida

description: Urban growth models have increasingly been used by planners and policy makers to visualize, organize, understand, and predict urban growth. However, these models reveal a wide disparity in their attention to policy factors. Some urban growth models capture few if any specific policy effects (e.g.,as model variables), while others integrate certain policies but not others. Since zoning policies are the most widely used form of land use control in the United States, their conspicuous absence from so many urban growth models is surprising. This research investigated the impacts of zoning on urban growth by calibrating and simulating a cellular automaton urban growth model, SLEUTH, under two conditions in a South Florida location. The first condition integrated restrictive agricultural zoning into SLEUTH, while the other ignored zoning data. Goodness of fit metrics indicate that including the agricultural zoning data improved model performance. The results further suggest that agricultural zoning has been somewhat successful in retarding urban growth in South Florida. Ignoring zoning information is detrimental to SLEUTH performance in particular, and urban growth modeling in general.
DOI: 10.6084/m9.figshare.14464761
title: Output files(part9)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464761.v1
title: Output files(part9)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.10270472
title: MOESM1 of Osteochondral allograft transplantation for large Hill-Sachs lesions: a retrospective case series with a minimum 2-year follow-up

description: Additional file 1. The patientâ€™s data.
DOI: 10.6084/m9.figshare.10270472.v1
title: MOESM1 of Osteochondral allograft transplantation for large Hill-Sachs lesions: a retrospective case series with a minimum 2-year follow-up

description: Additional file 1. The patientâ€™s data.
DOI: 10.6084/m9.figshare.6600470
title: Additional file 3: of Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

description: Table S2. List of DEGs from C. semilaevis in response to long-term hypotonic stress. (XLS 50 kb)
DOI: 10.6084/m9.figshare.10270490
title: MOESM1 of Identification of key candidate genes and molecular pathways in white fat browning: an anti-obesity drug discovery based on computational biology

description: Additional file 1. Candidate drugs targeting genes associated with brown fat or white fat browning. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6600470.v1
title: Additional file 3: of Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

description: Table S2. List of DEGs from C. semilaevis in response to long-term hypotonic stress. (XLS 50 kb)
DOI: 10.6084/m9.figshare.10270490.v1
title: MOESM1 of Identification of key candidate genes and molecular pathways in white fat browning: an anti-obesity drug discovery based on computational biology

description: Additional file 1. Candidate drugs targeting genes associated with brown fat or white fat browning. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.14464797
title: Output files(part11)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464797.v1
title: Output files(part11)

description: The output files of MIP3D.
DOI: 10.17188/1680937
title: Materials Data on Li2V(CO3)3 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1680938
title: Materials Data on K2YHf(PO4)3 by Materials Project

description: K2YHf(PO4)3 crystallizes in the cubic P2_13 space group. The structure is three-dimensional. there are two inequivalent K1+ sites. In the first K1+ site, K1+ is bonded in a 9-coordinate geometry to nine O2- atoms. There are a spread of K–O bond distances ranging from 3.01–3.19 Å. In the second K1+ site, K1+ is bonded in a 6-coordinate geometry to twelve O2- atoms. There are a spread of K–O bond distances ranging from 3.01–3.48 Å. Y3+ is bonded to six O2- atoms to form YO6 octahedra that share corners with six equivalent PO4 tetrahedra. There are three shorter (2.22 Å) and three longer (2.24 Å) Y–O bond lengths. Hf4+ is bonded to six O2- atoms to form HfO6 octahedra that share corners with six equivalent PO4 tetrahedra. There are three shorter (2.07 Å) and three longer (2.10 Å) Hf–O bond lengths. P5+ is bonded to four O2- atoms to form PO4 tetrahedra that share corners with two equivalent YO6 octahedra and corners with two equivalent HfO6 octahedra. The corner-sharing octahedra tilt angles range from 6–42°. There are a spread of P–O bond distances ranging from 1.53–1.57 Å. There are four inequivalent O2- sites. In the first O2- site, O2- is bonded in a distorted linear geometry to three K1+, one Hf4+, and one P5+ atom. In the second O2- site, O2- is bonded in a 2-coordinate geometry to one K1+, one Y3+, and one P5+ atom. In the third O2- site, O2- is bonded in a 2-coordinate geometry to one K1+, one Hf4+, and one P5+ atom. In the fourth O2- site, O2- is bonded in a distorted bent 150 degrees geometry to two K1+, one Y3+, and one P5+ atom.
DOI: 10.17188/1680939
title: Materials Data on LiNiPO4 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1680940
title: Materials Data on Li3V2(O2F)2 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1680943
title: Materials Data on Nd(SmSb)3 by Materials Project

description: Nd(SmSb)3 crystallizes in the monoclinic Cc space group. The structure is three-dimensional. there are three inequivalent Sm2+ sites. In the first Sm2+ site, Sm2+ is bonded to six Sb3- atoms to form distorted SmSb6 octahedra that share corners with three equivalent NdSb6 octahedra, corners with twelve SmSb6 octahedra, edges with six SmSb6 octahedra, faces with two SmSb6 octahedra, and faces with three equivalent NdSb6 octahedra. The corner-sharing octahedra tilt angles range from 18–50°. There are a spread of Sm–Sb bond distances ranging from 3.13–3.40 Å. In the second Sm2+ site, Sm2+ is bonded to six Sb3- atoms to form distorted SmSb6 octahedra that share corners with five equivalent NdSb6 octahedra, corners with ten SmSb6 octahedra, edges with two equivalent NdSb6 octahedra, edges with four SmSb6 octahedra, a faceface with one NdSb6 octahedra, and faces with four SmSb6 octahedra. The corner-sharing octahedra tilt angles range from 18–50°. There are a spread of Sm–Sb bond distances ranging from 3.13–3.39 Å. In the third Sm2+ site, Sm2+ is bonded to six Sb3- atoms to form distorted SmSb6 octahedra that share corners with five equivalent NdSb6 octahedra, corners with ten SmSb6 octahedra, edges with two equivalent NdSb6 octahedra, edges with four SmSb6 octahedra, a faceface with one NdSb6 octahedra, and faces with four SmSb6 octahedra. The corner-sharing octahedra tilt angles range from 18–49°. There are a spread of Sm–Sb bond distances ranging from 3.13–3.39 Å. Nd3+ is bonded to six Sb3- atoms to form distorted NdSb6 octahedra that share corners with two equivalent NdSb6 octahedra, corners with thirteen SmSb6 octahedra, edges with two equivalent NdSb6 octahedra, edges with four SmSb6 octahedra, and faces with five SmSb6 octahedra. The corner-sharing octahedra tilt angles range from 19–49°. There are a spread of Nd–Sb bond distances ranging from 3.15–3.41 Å. There are three inequivalent Sb3- sites. In the first Sb3- site, Sb3- is bonded to six Sm2+ and two equivalent Nd3+ atoms to form a mixture of distorted face, edge, and corner-sharing SbNd2Sm6 hexagonal bipyramids. In the second Sb3- site, Sb3- is bonded to six Sm2+ and two equivalent Nd3+ atoms to form a mixture of distorted face, edge, and corner-sharing SbNd2Sm6 hexagonal bipyramids. In the third Sb3- site, Sb3- is bonded to six Sm2+ and two equivalent Nd3+ atoms to form a mixture of distorted face, edge, and corner-sharing SbNd2Sm6 hexagonal bipyramids.
DOI: 10.17188/1680944
title: Materials Data on Ca14Cd51 by Materials Project

description: Ca14Cd51 is beta Plutonium-derived structured and crystallizes in the hexagonal P-6 space group. The structure is three-dimensional. there are five inequivalent Ca sites. In the first Ca site, Ca is bonded in a 10-coordinate geometry to twelve Cd atoms. There are a spread of Ca–Cd bond distances ranging from 3.33–3.93 Å. In the second Ca site, Ca is bonded in a 10-coordinate geometry to twelve Cd atoms. There are a spread of Ca–Cd bond distances ranging from 3.34–3.83 Å. In the third Ca site, Ca is bonded in a 12-coordinate geometry to fourteen Cd atoms. There are a spread of Ca–Cd bond distances ranging from 3.35–3.65 Å. In the fourth Ca site, Ca is bonded in a 12-coordinate geometry to fourteen Cd atoms. There are a spread of Ca–Cd bond distances ranging from 3.04–3.74 Å. In the fifth Ca site, Ca is bonded in a 12-coordinate geometry to twelve Cd atoms. There are a spread of Ca–Cd bond distances ranging from 3.24–3.40 Å. There are thirteen inequivalent Cd sites. In the first Cd site, Cd is bonded in a distorted trigonal planar geometry to three equivalent Ca and eight Cd atoms. There are six shorter (3.10 Å) and two longer (3.19 Å) Cd–Cd bond lengths. In the second Cd site, Cd is bonded in a 11-coordinate geometry to three equivalent Ca and eight Cd atoms. There are six shorter (3.05 Å) and two longer (3.22 Å) Cd–Cd bond lengths. In the third Cd site, Cd is bonded in a 10-coordinate geometry to four Ca and six Cd atoms. There are a spread of Cd–Cd bond distances ranging from 2.97–3.14 Å. In the fourth Cd site, Cd is bonded in a 10-coordinate geometry to four Ca and six Cd atoms. There are a spread of Cd–Cd bond distances ranging from 2.98–3.17 Å. In the fifth Cd site, Cd is bonded in a 10-coordinate geometry to three equivalent Ca and seven Cd atoms. All Cd–Cd bond lengths are 3.03 Å. In the sixth Cd site, Cd is bonded in a 10-coordinate geometry to three Ca and seven Cd atoms. There are a spread of Cd–Cd bond distances ranging from 2.92–3.32 Å. In the seventh Cd site, Cd is bonded in a 12-coordinate geometry to four Ca and eight Cd atoms. There are a spread of Cd–Cd bond distances ranging from 2.96–3.34 Å. In the eighth Cd site, Cd is bonded in a 10-coordinate geometry to three Ca and seven Cd atoms. There are one shorter (3.03 Å) and one longer (3.26 Å) Cd–Cd bond lengths. In the ninth Cd site, Cd is bonded in a 1-coordinate geometry to four Ca and eight Cd atoms. There are a spread of Cd–Cd bond distances ranging from 3.21–3.39 Å. In the tenth Cd site, Cd is bonded in a 12-coordinate geometry to four Ca and eight Cd atoms. There are one shorter (2.89 Å) and one longer (2.91 Å) Cd–Cd bond lengths. In the eleventh Cd site, Cd is bonded in a 10-coordinate geometry to three equivalent Ca and seven Cd atoms. In the twelfth Cd site, Cd is bonded in a 12-coordinate geometry to four Ca and eight Cd atoms. In the thirteenth Cd site, Cd is bonded in a 1-coordinate geometry to two Ca and six Cd atoms. Both Cd–Cd bond lengths are 2.86 Å.
DOI: 10.17188/1680945
title: Materials Data on Pr3AlCo8 by Materials Project

description: Pr3Co8Al crystallizes in the hexagonal P6_3/mmc space group. The structure is three-dimensional. there are two inequivalent Pr sites. In the first Pr site, Pr is bonded in a 12-coordinate geometry to nine equivalent Co and three equivalent Al atoms. There are six shorter (2.94 Å) and three longer (3.25 Å) Pr–Co bond lengths. All Pr–Al bond lengths are 3.07 Å. In the second Pr site, Pr is bonded in a 6-coordinate geometry to eighteen Co atoms. There are six shorter (2.98 Å) and twelve longer (3.23 Å) Pr–Co bond lengths. There are three inequivalent Co sites. In the first Co site, Co is bonded to five Pr, six Co, and one Al atom to form distorted CoPr5AlCo6 cuboctahedra that share corners with two equivalent AlPr6Co6 cuboctahedra, corners with fifteen equivalent CoPr5AlCo6 cuboctahedra, edges with eight equivalent CoPr5AlCo6 cuboctahedra, faces with three equivalent AlPr6Co6 cuboctahedra, and faces with eleven equivalent CoPr5AlCo6 cuboctahedra. There are a spread of Co–Co bond distances ranging from 2.45–2.59 Å. The Co–Al bond length is 2.62 Å. In the second Co site, Co is bonded in a 12-coordinate geometry to three equivalent Pr and six equivalent Co atoms. In the third Co site, Co is bonded in a 12-coordinate geometry to three equivalent Pr and six equivalent Co atoms. Al is bonded to six equivalent Pr and six equivalent Co atoms to form AlPr6Co6 cuboctahedra that share corners with twelve equivalent CoPr5AlCo6 cuboctahedra, edges with six equivalent AlPr6Co6 cuboctahedra, and faces with eighteen equivalent CoPr5AlCo6 cuboctahedra.
DOI: 10.17188/1680946
title: Materials Data on SrCaMnO4 by Materials Project

description: SrCaMnO4 is (La,Ba)CuO4-derived structured and crystallizes in the tetragonal I4mm space group. The structure is three-dimensional. Sr2+ is bonded in a 9-coordinate geometry to nine O2- atoms. There are a spread of Sr–O bond distances ranging from 2.40–2.71 Å. Ca2+ is bonded in a 9-coordinate geometry to nine O2- atoms. There are a spread of Ca–O bond distances ranging from 2.39–2.71 Å. Mn4+ is bonded to six O2- atoms to form corner-sharing MnO6 octahedra. The corner-sharing octahedral tilt angles are 3°. There are a spread of Mn–O bond distances ranging from 1.91–2.00 Å. There are three inequivalent O2- sites. In the first O2- site, O2- is bonded to four equivalent Sr2+, one Ca2+, and one Mn4+ atom to form distorted OSr4CaMn octahedra that share corners with seventeen OSr2Ca2Mn2 octahedra, edges with eight OSr4CaMn octahedra, and faces with four equivalent OSr2Ca2Mn2 octahedra. The corner-sharing octahedra tilt angles range from 0–56°. In the second O2- site, O2- is bonded to one Sr2+, four equivalent Ca2+, and one Mn4+ atom to form distorted OSrCa4Mn octahedra that share corners with seventeen OSr2Ca2Mn2 octahedra, edges with eight OSr4CaMn octahedra, and faces with four equivalent OSr2Ca2Mn2 octahedra. The corner-sharing octahedra tilt angles range from 0–55°. In the third O2- site, O2- is bonded to two equivalent Sr2+, two equivalent Ca2+, and two equivalent Mn4+ atoms to form a mixture of distorted edge, face, and corner-sharing OSr2Ca2Mn2 octahedra. The corner-sharing octahedra tilt angles range from 3–56°.
DOI: 10.17188/1680947
title: Materials Data on Mg3Cd by Materials Project

description: Mg3Cd is alpha bismuth trifluoride structured and crystallizes in the tetragonal I4/mmm space group. The structure is three-dimensional. there are two inequivalent Mg sites. In the first Mg site, Mg is bonded to eight equivalent Mg and four equivalent Cd atoms to form MgMg8Cd4 cuboctahedra that share corners with four equivalent MgMg8Cd4 cuboctahedra, corners with eight equivalent CdMg12 cuboctahedra, edges with twenty-four MgMg8Cd4 cuboctahedra, faces with six equivalent CdMg12 cuboctahedra, and faces with twelve MgMg8Cd4 cuboctahedra. All Mg–Mg bond lengths are 3.11 Å. All Mg–Cd bond lengths are 3.24 Å. In the second Mg site, Mg is bonded to eight Mg and four equivalent Cd atoms to form distorted MgMg8Cd4 cuboctahedra that share corners with twelve equivalent MgMg8Cd4 cuboctahedra, edges with eight equivalent CdMg12 cuboctahedra, edges with sixteen MgMg8Cd4 cuboctahedra, faces with four equivalent CdMg12 cuboctahedra, and faces with fourteen MgMg8Cd4 cuboctahedra. All Mg–Mg bond lengths are 3.24 Å. All Mg–Cd bond lengths are 3.11 Å. Cd is bonded to twelve Mg atoms to form CdMg12 cuboctahedra that share corners with four equivalent CdMg12 cuboctahedra, corners with eight equivalent MgMg8Cd4 cuboctahedra, edges with eight equivalent CdMg12 cuboctahedra, edges with sixteen equivalent MgMg8Cd4 cuboctahedra, faces with four equivalent CdMg12 cuboctahedra, and faces with fourteen MgMg8Cd4 cuboctahedra.
DOI: 10.17188/1680949
title: Materials Data on LiV2O5 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1680950
title: Materials Data on Ti3Mn2Nb(PO4)6 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations