cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gd5qb/1
title: Great tit social pairs - relatedness/allele/supertype/reproduction data

description: MHC allele sharing, MHC supertype sharing, relatedness and reproductive output data of the great tit social pairs used in the study
DOI: 10.5061/dryad.kq0n5/1
title: DeWoody P. nigra metadata

description: Microsatellite data associated with DeWoody, Trewin & Taylor, Genetic and morphological differentiation in Populus nigra L.: Isolation by colonization or isolation by adaptation?
DOI: 10.5061/dryad.kq0n5/2
title: DeWoody et al Pnigra morphological data Dryad

description: Morphological data from common garden experiment used in DeWoody, Trewin & Taylor, Genetic and morphological differentiation in Populus nigra L.: Isolation by colonization or isolation by adaptation?
DOI: 10.5061/dryad.kq0n5/3
title: DeWoody et al Pnigra climate data Dryad

description: WorldClim climate data for Populus nigra sampling sites, plus the first three factors resulting from the multivariate analysis of such.
DOI: 10.5061/dryad.mm36n/1
title: Data from: Feather bacterial load shapes the trade-off between preening and immunity in pigeons
DOI: 10.5061/dryad.qm96r/1
title: Datasets

description: Full contents of data presented in figures 1-5
DOI: 10.5061/dryad.rj017/1
title: 2007-2009 female multiple mating and offspring survival data

description: Raw data for female multiple mating and offspring survival
DOI: 10.5061/dryad.rj017/2
title: 2007-2009 male behavior LSR and fitness

description: Raw data for male behavior, local sex ratio, and estimates of male fitness
DOI: 10.5061/dryad.rj017/3
title: 2007-2009 male mating success and reproductive success

description: Raw data for male mating success and reproductive success
DOI: 10.5061/dryad.rp3g3/10
title: d1d2th_plot
DOI: 10.5061/dryad.rp3g3/11
title: d1d2th_plot2
DOI: 10.5061/dryad.rp3g3/12
title: excelroul
DOI: 10.5061/dryad.rp3g3/13
title: gent1t2h3
DOI: 10.5061/dryad.rp3g3/14
title: kde2d
DOI: 10.5061/dryad.rp3g3/15
title: lance2silvia2
DOI: 10.5061/dryad.rp3g3/7
title: Matlab basic plot
DOI: 10.5061/dryad.rp3g3/8
title: matlab colorbar
DOI: 10.5061/dryad.rp3g3/9
title: matlab to compare two strains
DOI: 10.5061/dryad.sf103/1
title: Playback response data

description: Treatment level, year, number of yearling (sy.abun) and adult (asy.abun) settlers, and PCA scores for the 7 habitat variables for all experimental playback stations used in the analysis
DOI: 10.5061/dryad.00ss6/5
title: Turner and Buckley 2008 + Postosuchus

description: Character-taxon matrix of Turner and Buckley (2008) with added scorings for Postosuchus
DOI: 10.5061/dryad.00ss6/6
title: Sereno and Larsson 2009 + outgroups

description: Character-taxon matrix of Sereno and Larsson (2009) with added scorings for Gracilisuchus and Postosuchus
DOI: 10.5061/dryad.00ss6/7
title: Supplementary figures - Rev 1

description: Supplementary figures
DOI: 10.5061/dryad.00ss6/8
title: Online Appendix 1 - materials - Rev 1

description: Materials and references utilized in character scoring
DOI: 10.5061/dryad.00ss6/9
title: Online Appendix 2 - character list - Rev 1

description: Character list and state descriptions of the data matrix used in the phylogenetic analysis.
DOI: 10.5061/dryad.1pj04/39
title: CEL file for isolate IC1533

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/40
title: CEL file for isolate IC324

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/41
title: CEL file for isolate IC1630

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/42
title: CEL file for isolate IC1112

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/43
title: CEL file for isolate IC1516

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/44
title: CEL file for isolate IC1766

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/45
title: CEL file for isolate IC2171

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/46
title: CEL file for isolate IC1755

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/47
title: CEL file for isolate IC301

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.24d1b/1
title: Santangelo et al., 2015 Botany_Raw data

description: The data file contains a total of 8 sheets. Four of the sheets contain the raw data while the other four contain the metadata describing what each of the columns/variables in the data files mean and how they were measured. Data sheets are numbered and correspond to their relevant metadata sheets within the dataset. Note that individual datasheets should be saved as .csv files for use with attached R-scripts.
DOI: 10.5061/dryad.24d1b/2
title: Santangelo et al., 2015 Botany_Master R script

description: R script used in analyzing the attached data files. The script contains 4 sections representing 4 separate analyses, each to be used with one of the four datasheets in the .xls file provided.
DOI: 10.5061/dryad.5hh54/1
title: Supplementary File 3

description: EDGE-tag data
DOI: 10.5061/dryad.5rg54/1
title: Measurements of food transfer among and life-history traits of female European earwigs and their offspring

description: The data file contains measurements of maternal food provisioning and the food transfer among nymphs, as well as measurements of morphological and life-history traits. Note that column-names are explained in the 'annotations'-sheet of the file.
DOI: 10.5061/dryad.622h6/1
title: distichus species group DNA alignment

description: Concatenated multilocus DNA sequence alignment of the distichus species group and outgroups. Alignment consists of 58 taxa and eight genes -  seven nuclear loci (RAG1, R35, BDNF, NT3, B108, B127, and GJA) and one mitochondrial locus (ND2). File includes mrbayes block used for analysis.
DOI: 10.5061/dryad.622h6/2
title: *BEAST posterior distribution of trees

description: Posterior distribution of phylogenetic trees estimated using the coalescent species tree software *BEAST (v1.7.5).
DOI: 10.5061/dryad.622h6/3
title: *BEAST MCC tree

description: Maximum clade credibility species tree inferred using the coalescent species tree software *BEAST v1.7.5.
DOI: 10.5061/dryad.622h6/4
title: MrBayes consensus tree

description: Majority rule consensus tree inferred using MrBayes. Node support values are posterior probabilities.
DOI: 10.5061/dryad.622h6/5
title: BEAST MCC tree

description: Maximum clade credibility tree inferred from analysis of concatenated dataset using BEAST v1.7.5.
DOI: 10.5061/dryad.7q3j8/1
title: CTmax data

description: All data in this file was collected in the field. Data were input manually. These data were used for all analyses having heat-tolerance as a response variable. Species codes were used: Ebparvi = Eciton burchellii parvispinum, ECITmexi = Eciton mexicanum, LABIcoec = Labidus coecus, LABIprae = Labidus praedator, LABIJTL001 = Labidus JTL001, LABIspin = Labidus spininodis, NEIVpilo = Neivamyrmex pilosus, NEIVmacr = Neivamyrmex macrodentatus, NEIVsumi = Neivamyrmex sumichrasti
DOI: 10.5061/dryad.7q3j8/2
title: iButton air temperatures

description: These data were collected in the field using calibrated ibutton temperature  loggers (model: thermochron, Maxim Integrated). OneWireViewer software was used to read probes.
DOI: 10.5061/dryad.7q3j8/3
title: Max & Min surface temperatures

description: These data are maximum and minimum surface temperatures collected at 40 surface army ant raids in Monteverde, Costa Rica using infrared thermometers.
DOI: 10.5061/dryad.7q3j8/4
title: Specimen head widths

description: These are a collection of head-width measurements used to calculate means for each visually-discerned size category. Specimens were stored together within each body size category. Specimens were photographed under a dissecting microscope, and measured using ImageJ.
DOI: 10.5061/dryad.gd5qb/2
title: individual allele & supertype data

description: Great tit MHC allele and MHC supertype data
DOI: 10.5061/dryad.gd5qb/3
title: MHC allele aminoacid distances

description: The amino acid distance estimates and standard errors  between each great tit MHC allele
DOI: 10.5061/dryad.j81dm/1
title: Soil macro-detritivore assemblage abundance and diversity, environmental variables and soil processes data

description: File includes data about the abundance and diversity of soil macro-detritivore assemblages and their functional groups, i.e. litter transformers (Diplopoda, Isopoda and epigeic earthworms) and soil engineers (anecic and endogeic earthworms), on each experimental plots. It also includes plots characteristics, environmental variables used in the path analysis, soil processes data and abundance data for each species.
DOI: 10.5061/dryad.jf7b3/1
title: Supplementary Information

description: Methods for computing access time statistics as well as supplementary tables and figures.
DOI: 10.5061/dryad.kp854/1
title: Analysis scripts and simulation results for trait-dependent speciation models

description: Data file includes simulation results, code to repeat simulations, Appendix with supplementary methods, and supplementary results.
DOI: 10.5061/dryad.rp3g3/16
title: plotboxplot
DOI: 10.5061/dryad.rp3g3/17
title: lance2silvia
DOI: 10.5061/dryad.rp3g3/18
title: plotboxplot2
DOI: 10.5061/dryad.rp3g3/19
title: plotboxplot3
DOI: 10.5061/dryad.rp3g3/20
title: plothist
DOI: 10.5061/dryad.rp3g3/21
title: Silvia01
DOI: 10.5061/dryad.rp3g3/22
title: sylviaextr2
DOI: 10.5061/dryad.rp3g3/23
title: tableplot
DOI: 10.5061/dryad.rp3g3/24
title: temp34cus
DOI: 10.5061/dryad.rp3g3/25
title: MPI_opti
DOI: 10.5061/dryad.sf103/2
title: Dispersal Data

description: Total number of individuals and the number of immigrants under the 4:1, 9:1, and 19:1 odds ratios. First row corresponds to the general populations, second row to individuals that responded to location cue treatments
DOI: 10.5061/dryad.00ss6/11
title: Wilberg SystBiol 12-2014 - Rev 1

description: Character taxon matrix developed for this study
DOI: 10.5061/dryad.00ss6/12
title: Turner and Buckley 2008 with modified char scoring

description: The matrix of Turner and Buckley 2008 with three characters recoded
DOI: 10.5061/dryad.0h653/1
title: Nematode sequeences

description: Denoised nematode seqeunces from 22 agricultural soils
DOI: 10.5061/dryad.13mn3/13
title: Multilocus genotypes-Aervi

description: Multilocus genotypes of Aphidius ervi samples collected on different aphid hosts (APA: A. pisum-alfalfa; APP: A. pisum- pea; APC: A. pisum-clover; SA: S. avenae and RP: R. padi) , geographic regions and seasons.
DOI: 10.5061/dryad.1pj04/48
title: CEL file for isolate IC34

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/49
title: CEL file for isolate IC720

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/50
title: CEL file for isolate IC796

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/51
title: CEL file for isolate IC1142

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/52
title: CEL file for isolate IC1169

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/53
title: CEL file for isolate IC3655

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/54
title: CEL file for isolate IC3656

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/55
title: CEL file for isolate IC3657

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/56
title: CEL file for isolate IC4047

description: aCGH raw data submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.2t30k/1
title: Supplementary Table 1

description: Observed contact incidences between apical plate pairs in echinoids along with topological index values. Abbreviations: OUT, outgroup representing the regular pattern; BI, basal Irregularia; BA, basal Atlostomata; H, Holasteroida; S, Spatangoida. EJ, Early Jurassic (Liassic); MJ, Middle Jurassic; LJ, Late Jurassic; EC, Early Cretaceous; LC, Late Cretaceous; PN, Paleogene and Neogene; P, Present day. OI to OV, ocular plates 1 to 5; G1 to G5, genital plates 1 to 5. Apical systems of reference specimens are from the literature and from specimens observed in collections. Collection specimens are from private collections: Clavel, Courville, Fournier, Vadet, and Votat.  Collection specimens from academic collections are from: University of Burgundy, Dijon, France (UB), National History Museum, London, UK (NHM), Museum of Comparative Zoology, Harvard University, Mass. (MCZ), Museu de Geologia, Barcelona, Spain (MGB), Muséum National d'Histoire Naturelle, Paris, France (MNHN), University of California Museum of Paleontology, Berkeley (UCMP), Saint-Petersburg State University, Russia (SPU), University of Toulouse, France (UT), National Museum of Natural History, Smithsonian Institution, Washington, D.C. (USNM), Institute of Paleobiology of Polish Academy of Sciences in Warsaw, Poland (PAS), Sedgwick Museum of Earth Sciences, University of Cambridge, UK (SM), Museum of Lyon, France (ML), Paleontological Institute of the Russian Academy of Sciences, Moscow, Russia (RAS), Département de Géologie de la Faculté des Sciences d’Agadir, Morocco (MAS), Museum of Grenoble, France (MG).
DOI: 10.5061/dryad.2t30k/2
title: Supplementary Appendix

description: Elements of proof on the ranges of the topological indexes used to characterize plate architectures, considering n&gt;3.
DOI: 10.5061/dryad.4rb0r/1
title: Guenon face pattern classification data

description: Three Excel spreadsheets containing the data used for classification analyses based on 1.) eigenfaces, 2.) nose-spots and 3.) eyebrow patches.
DOI: 10.5061/dryad.4tg23/1
title: Mean landcover in buffers around marten sample locations

description: This file includes the mean and standard deviation of the climate and landcover variables within each 9-km radius buffer around American marten (Martes americana) sampling sites (n=29) in Ontario, Canada.
DOI: 10.5061/dryad.70c34/1
title: Online Appendices

description: Appendix showing the mathematical equivalency between Ornstein-Uhlenbeck and accelerating change models, as well as supplementary figures.
DOI: 10.5061/dryad.b5tr9/1
title: MMI

description: Biodiversity indices used in Multi-model inference.
DOI: 10.5061/dryad.b5tr9/2
title: Traits

description: Functional traits of the species in this study.
DOI: 10.5061/dryad.b5tr9/3
title: community

description: Matrix of species composition of the communities studied.
DOI: 10.5061/dryad.bh52d/1
title: experimental_data

description: Please see README.txt file.
DOI: 10.5061/dryad.bh52d/2
title: simulation_data_part1

description: Please see README.txt file.
DOI: 10.5061/dryad.bh52d/3
title: simulation_data_part2

description: Please see README.txt file.
DOI: 10.5061/dryad.f2g0f/4
title: Phylogenomic  Datasets and Trees

description: It includes the alignments and trees generated for the species phylogeny
DOI: 10.5061/dryad.f2g0f/5
title: list of proteins analyzed for organismal phylogenetic analyses
DOI: 10.5061/dryad.f2g0f/6
title: Clustering_run1973_clusterMembers

description: Gene clustering used for organismal phylogenetic analyses
DOI: 10.5061/dryad.j55sn/1
title: Data from: Dynamics of pre-choice and post-choice behaviour: rats approximate optimal strategy in a discrete-trial decision task

description: Data from: Dynamics of pre-choice and post-choice behaviour: rats approximate optimal strategy in a discrete-trial decision task
DOI: 10.5061/dryad.n20ms/1
title: Full Subsampled OTU table

description: This is the full subsampled OTU table from which all analyses were based.
DOI: 10.5061/dryad.q2n8p/1
title: MasterPlotData

description: Data on the plot environment that was sampled for this study. Contains metadata.
DOI: 10.5061/dryad.q2n8p/2
title: TotalDiversityData

description: A plot X species matrix with percent cover, standardized to 2 years post fire in most cases. Contains metadata.
DOI: 10.5061/dryad.q2n8p/3
title: UniqueSpecies

description: A list of species in the study, containing information for each specieson biogeographic affinity, leaf traits, life form, and dispersal syndromes. Metadata included.
DOI: 10.5061/dryad.q50m1/1
title: Individual mitotypes and microsatellite genotypes

description: Genetic data of the H. arborea/H. orientalis contact zones in southern Europe. Mitochondrial haplotypes (cyt-b) and genotypes of microsatellite genotypes (23 loci) for each individual. NA: missing data. Information on localities are available in supporting information of the publication.
DOI: 10.5061/dryad.r87k3/1
title: Microhex_Standard_POFADdistances

description: multigenic genetic distance file generated by POFAD 1.01
DOI: 10.5061/dryad.r87k3/2
title: Microhexura_nonStandardized_POFADdistances

description: multigenic genetic distance file generated by POFAD 1.01
DOI: 10.5061/dryad.r87k3/3
title: PhasedMatrices_Archive

description: Phased phylogenetic matrices, Nexus format
DOI: 10.5061/dryad.r87k3/4
title: Morphology_Plates_Archive

description: Morphology images, JPG format
DOI: 10.5061/dryad.r87k3/5
title: STRUCTURE_input_output

description: STRUCTURE input and out files
DOI: 10.5061/dryad.r87k3/6
title: RAxML_COI_bipartitions

description: COI RAxML .tre file
DOI: 10.5061/dryad.r87k3/7
title: RAxML_nuclear_tre_files

description: nuclear RAxML .tre files
DOI: 10.5061/dryad.t0tv0/1
title: Functional role of phenylacetic acid from metapleural gland secretions manuscript Fernandez-Marin et al
DOI: 10.5061/dryad.13mn3/14
title: imput files to sibship inferences

description: Imput files used to sibship inferences in Colony software.
DOI: 10.5061/dryad.1pj04/57
title: Figure 4 - aCGH data for dendrogram
DOI: 10.5061/dryad.1pj04/58
title: Figure 5 - aCGH data for heat map
DOI: 10.5061/dryad.1pj04/59
title: aCGH metadata

description: aCGH metadata submitted to Gene Expression Omnibus
DOI: 10.5061/dryad.1pj04/60
title: aflM_aflN locus - A. parasiticus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/61
title: aflW_aflX locus - A. parasiticus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/62
title: trpC locus - A. parasiticus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/63
title: aflC_aflD locus - A. parasiticus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/64
title: aflC_aflD locus - A. parasiticus x. A. flavus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.2c1s7/1
title: Sapling allometry DBH, D10 & Height

description: Contains data on DBH (cm), D10 (cm) and Height (m) for a total of 145 saplings for the eight taxa under consideration. The year in which the DBH and height and D10 data were recorded is reported for each individual. Data collected in the field
DOI: 10.5061/dryad.2c1s7/2
title: Adult allometry DBH, Height & Crown height

description: Contains data on DBH (cm), Height (m), Crown height (m) and Crown radius (m) for a total of 297 adult trees for the eight taxa under consideration. The year in which DBH, height and crown height and radius were recorded are reported for each individual. Data collected in the field
DOI: 10.5061/dryad.2c1s7/4
title: Sapling growth

description: Contains data on DBH growth rates (cm yr-1) for the periods between measurements, the mean growth rate, D10 (cm), and the fraction of ambient light in the tree’s environment for 129 individuals representing seven of the eight taxa under consideration. The year in which D10 and light were measured is reported. Data collected in the field.
DOI: 10.5061/dryad.2c1s7/6
title: Canopy openness

description: Contains data on canopy openness for 165 single taxon stands of the eight taxa under consideration. Data collected in the field.
DOI: 10.5061/dryad.2c1s7/8
title: All trees height v DBH

description: Contains data on DBH (cm) and Height (m) for 404 individuals for the eight taxa under consideration. Repeated measures on each individual results in 1018 records, the year of each measurement is reported. Data collected in the field
DOI: 10.5061/dryad.2f6f2/1
title: Character List
DOI: 10.5061/dryad.2f6f2/2
title: Cladistic Matrix
DOI: 10.5061/dryad.2f6f2/3
title: Morphometric Data
DOI: 10.5061/dryad.363gs/1
title: Yue et al 2015 Data

description: Camera trap and site data used for the study
DOI: 10.5061/dryad.3d727/1
title: DNA quantification by Nanodrop Spectrophotometer

description: Analysis data of DNA yield from buccal swabs and wing punches harvested from live bats using nucleic acid quantification as well as DNA yields from wing tissue preserved in three media: ethanol, NaCl-saturated dimethyl sulfoxide (DMSO), and silica desiccant.
DOI: 10.5061/dryad.3d727/2
title: DNA quantification qPCR

description: Analysis data of DNA yield from buccal swabs and wing punches harvested from live bats using quantitative PCR for a single-copy nuclear locus.
DOI: 10.5061/dryad.56m2g/1
title: Zip archive VCF files

description: Zip file containing the very last version of VCF file containing all SNPS called on the three subspecies of chimpanzees for our publicationSee README
DOI: 10.5061/dryad.629sc/2
title: data

description: The various data files used in the simulation and the empirical reanalysis
DOI: 10.5061/dryad.629sc/3
title: BeaulieuetalSupplement

description: Supplemental Materials
DOI: 10.5061/dryad.72h45/1
title: Riparian wood density data

description: This file contains: the names, proportional abundances and wood density values (in g/cm^3) of species found at fifteen riparian plots across south eastern Australia. Wood density values given in the column "fieldWD" were measured in the field from individuals within the appropriate plot. Species which were present in plots but which could not be cored due to small size were assigned averaged values of wood density from the same species measured at other sites, where possible; the column "allFieldWD" includes these values. Remaining species were assigned values from peer-reviewed literature sources; the column "allWD" includes all values used in the analysis.
DOI: 10.5061/dryad.7bj60/1
title: Flowering time Records in the F252 DSE

description: Compilation of field notations for flowering time realized between 1997 (generation G1) and 2014 (generation G18) in the F252 DSE. Columns description in the Read.me file
DOI: 10.5061/dryad.7bj60/2
title: Flowering time Records in the MBS DSE

description: Compilation of field notations for flowering time realized between 1997 (generation G1) and 2014 (generation G18) in the MBS DSE. Columns description are in the Read.me file
DOI: 10.5061/dryad.7bj60/3
title: Pedigrees from the F252 DSE

description: Pedigree of the progenitors since generation G0 (1993) in the F252 DSE.
DOI: 10.5061/dryad.7bj60/4
title: Pedigrees from the MBS DSE

description: Pedigree of the progenitors since generation G0 (1993) of the MBS DSE.
DOI: 10.5061/dryad.7bj60/5
title: Description of the AFLP/MSAP systems

description: Description of the AFLP/MSAP systems used for genotyping the F252 and MBS DSEs between Generations G0 and G6.
DOI: 10.5061/dryad.7d65n/1
title: Raw Data - Survey 1

description: Raw data from the first survey (qualitative themes)
DOI: 10.5061/dryad.7d65n/2
title: Raw Data - Survey 2

description: Raw Data from the second survey (quantitative ranking)
DOI: 10.5061/dryad.7qc88/1
title: Microsatellites in Chinese bayberry (Myrica rubra)

description: genotype data for 216 accessions for 84 microsatellite loci
DOI: 10.5061/dryad.7vn28/1
title: Niu et al.plos one raw data

description: We uploaded the clinical examination results,mRNA and protein expressions of NLRP3,caspase-1,IL-18 and IL-1β. Also we uploaded Table 1 and Table 2