cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0k90t/2
title: CEL files

description: This zip file contains 18 CEL files, named with the ages (3-day-old and 60-day-old) and treatments (corn oil [CO], TCPOBOP, PCN).
DOI: 10.5061/dryad.18bv9/2
title: Figure 2a JG

description: Raw data for Figure 2a
DOI: 10.5061/dryad.18bv9/3
title: Figure 2b germination 02Nov 2015

description: Raw data for Figure 2b
DOI: 10.5061/dryad.18bv9/4
title: Figure 3 JG

description: Raw data for Figure 3
DOI: 10.5061/dryad.18bv9/5
title: Figure 4 JG

description: Raw data for Figure 4
DOI: 10.5061/dryad.1nr07/12
title: 74_EEG_data

description: EEG data for participant 74.
DOI: 10.5061/dryad.1nr07/13
title: 75_EEG_data

description: EEG data for participant 75.
DOI: 10.5061/dryad.1nr07/14
title: 79_EEG_data

description: EEG data for participant 79.
DOI: 10.5061/dryad.1nr07/15
title: 80_EEG_data

description: EEG data for participant 80.
DOI: 10.5061/dryad.1nr07/16
title: 81_EEG_data

description: EEG data for participant 81.
DOI: 10.5061/dryad.1nr07/17
title: 87_EEG_data

description: EEG data for participant 87.
DOI: 10.5061/dryad.1nr07/18
title: 88_EEG_data

description: EEG data for participant 88.
DOI: 10.5061/dryad.232ss/1
title: Aralar.dataset

description: Fine-scale floristic composition and soil descriptors in three sites of Aralar Natural Park (northern Iberian Peninsula).
DOI: 10.5061/dryad.2c1c9/1
title: TableA1

description: Bird ID, emergence period, mean and total excursion time, and number of excursions.
DOI: 10.5061/dryad.2r054/5
title: survival data 1C
DOI: 10.5061/dryad.2r054/6
title: Insect data
DOI: 10.5061/dryad.40hs5/1
title: Bedok ngsfilter file

description: Demultiplexing reference file for Bedok Reservoir dataset, containing primer tag assignments. For use with the ngsfilter step of the obitools pipeline.
DOI: 10.5061/dryad.40hs5/2
title: Pandan ngsfilter file

description: Demultiplexing reference file for Pandan Reservoir dataset, containing primer tag assignments. For use with the ngsfilter step of the obitools pipeline.
DOI: 10.5061/dryad.40hs5/3
title: Aligned sequence set used for objective clustering

description: Final aligned COI sequence set comprising the combined Bedok and Pandan datasets, used for MOTU delimitation via objective clustering.
DOI: 10.5061/dryad.40hs5/4
title: Bedok obitools output

description: Cleaned Bedok dataset after obitools filtering.
DOI: 10.5061/dryad.40hs5/5
title: Pandan obitools output

description: Cleaned Pandan dataset after obitools filtering.
DOI: 10.5061/dryad.6d87p/1
title: Paternity_data_Dryad

description: First spreadsheet shows data, labels are shown in the second spreadsheet
DOI: 10.5061/dryad.7b6t9/2
title: Genotype data for four full-sib families of Pacific oyster Plough et al. 12-1-15

description: Genotype data for parents (Sire/Dam) and offspring (Pro-1,2,3, etc), arranged by cross/family in 4 separate tabs. Data are in Join map format (CP or cross pollinator type) with the Sire and Dam highlighted in bold. Marker names run across the top in row 2 (ID). Additional information on each marker (e.g. the marker class/type and genotyping platform used) can be found in the supplementary information from Plough et al. 2016.
DOI: 10.5061/dryad.8290n/1
title: Simulated SNP data under a island and a divergence model.

description: The present archive contains 4 subfolders. Each subfolder contains a set of simulations relative to a specific model, which are listed in the filenames.txt. For each simulation, there are 5 files associated with: - the file without any extension contains the genotype matrix encoded with 0, 1 and 2.- the ped file.- the map file.- the file with the .gt extension contains the list of selected SNPs for the simulation.- the file with the .pop extension contains the population labels for each individual.
DOI: 10.5061/dryad.83420/1
title: HEK293T cell small RNA-seq

description: small RNA-seq reads from HEK293T cells mapped to human genome hg19.
DOI: 10.5061/dryad.83420/2
title: Exosomes from HEK293T cells small RNA-seq reads

description: Small RNA-seq reads from purified exosomes aligned to human genome hg19
DOI: 10.5061/dryad.8c65s/1
title: Honeyguide location data

description: Column descriptions: BirdID: unique identifier for each radio-tracked honeyguide individual. Sex: the honeyguide's sex (Male/Female). Age: the honeyguide's age category when captured for radio-tagging (Adult/Immature). Mass: the honeyguide's body mass when captured for radio-tagging (g). Date: date of location (dd/mm/yy). Time: time of location (hh:mm). Latitude: latitude of location (d.ddddd). Longitude: longitude of location (d.ddddd). Source: type of location data (Capture/Telemetry/Resighting/Camera trap).
DOI: 10.5061/dryad.8kn73/1
title: Estimated growth of strains using growth curves
DOI: 10.5061/dryad.9s690/1
title: zip file containing 6 data sets

description: This zip file contains the following data: (i) "oocyst and egg.txt" contains data used to analyse the oocyst rate and intensity as well as egg incidence, (ii) "survival 7 dp.txti" was used ti analyse mosquito survival until 7 day-post infection, (iii) "sporozoite index.txt" was used to analyse sporozoite rate at 14 day post-infection, (iv) "survival 14 dpi.txt" was used to analyse mosquito survival until 14 days post-infection, (v) "sporozoite temporal dynamic.txt" was used to analyse the parasite extrinsic incubation period, and (vi) "longevity.txt" was used to analyse the effect of plant treatment on the longevity of infected and uninfected control mosquitoes.
DOI: 10.5061/dryad.d08fb/1
title: Data from Hierro et al. 2016 Ecography

description: This is an Excel file, where data from our study is organized in different sheets.
DOI: 10.5061/dryad.dk565/1
title: draco_robotdata

description: raw data of variables for each behavioural trial
DOI: 10.5061/dryad.f4r38/1
title: Amino acid alignments of insect insulator proteins

description: This archive contains amino acid alignments of all insect insulator proteins found in the 1KITE transcriptome data and the sequences that were used, to infer profile Hidden Markov Models for this search. The alignments are in the .fasta file format.
DOI: 10.5061/dryad.f4r38/2
title: Gene trees of insect insulator proteins

description: This archive contains all gene trees inferred from amino acid alignments of insulator protein sequences that were found in the 1KITE transcriptome data. The gene trees are in the .newick file format.
DOI: 10.5061/dryad.f4r38/3
title: Nucleotide alignments of insect insulator proteins

description: This archive contains all nucleotide alignments of insect insulator protein sequences found in the 1KITE project. These alignments have been used to infer dN/dS ratios as markers for positive or negative selection in these sequences. The alignments are in the .fasta file format.
DOI: 10.5061/dryad.f8q6b/1
title: covariance_matrices_chipmunks

description: This file has the covariance matrices for each time period in each population (each sheet). the last sheet represents the averages in each trait for each population
DOI: 10.5061/dryad.j5148/1
title: Biomass and height data
DOI: 10.5061/dryad.kj51b/1
title: Casado-Coy et. al., 2016. Data

description: Biogeochemical fluxes and derived products.
DOI: 10.5061/dryad.kn206/4
title: Controls

description: Illumina MiSeq data for extraction and PCR blanks, as well as for old and new mock sample
DOI: 10.5061/dryad.m35k6/100
title: ModelSel_ORJU_2012_Dynamic

description: AIC model selection table and associated coefficients for dark-eyed (Oregon) junco 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/101
title: ModelSel_ORJU_2013_Dynamic

description: AIC model selection table and associated coefficients for dark-eyed (Oregon) junco 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/102
title: ModelSel_PAWR_2012_Dynamic

description: AIC model selection table and associated coefficients for Pacific wren 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/103
title: ModelSel_PAWR_2013_Dynamic

description: AIC model selection table and associated coefficients for Pacific wren 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/104
title: ModelSel_PSFL_2012_Dynamic

description: AIC model selection table and associated coefficients for Pacific-slope flycatcher 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/96
title: ModelSel_HETH_2012_Dynamic

description: AIC model selection table and associated coefficients for hermit thrush 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/97
title: ModelSel_HETH_2013_Dynamic

description: AIC model selection table and associated coefficients for hermit thrush 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/98
title: ModelSel_HEWA_2012_Dynamic

description: AIC model selection table and associated coefficients for hermit warbler 2012 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/99
title: ModelSel_HEWA_2013_Dynamic

description: AIC model selection table and associated coefficients for hermit warbler 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.n4c7j/1
title: Supplementary material

description: The raw data and alternative linear mixed models are listed in the tables. The video is recorded via an infrared camera (SonyHDR- CX760PJ760, Japan) in the in temporary field station near the bat roost.
DOI: 10.5061/dryad.q4222/1
title: AppendixE
DOI: 10.5061/dryad.rt3f3/1
title: Lejeune_et_al_2016_surv
DOI: 10.5061/dryad.rt3f3/2
title: Lejeune_et_al_2016_interval_data
DOI: 10.5061/dryad.rt3f3/3
title: Lejeune_et_al_2016_eggs_data
DOI: 10.5061/dryad.sc38b/1
title: Data to accompany Rigano et. al. (2016) J.Comp.Physiol, B

description: data to accompany manuscript
DOI: 10.5061/dryad.sf0nn/1
title: Recordings used for Figure 2

description: Source level of five noise eggs measured at 1 m from the egg, at 1 m depth in a water column of approximately 2.5m above a muddy bottom.
DOI: 10.5061/dryad.sf0nn/2
title: Recordings used for Figure 4

description: Absolute sound pressure levels and relative particle velocity of five noise eggs measured at 50 cm from the egg. SPL in the field was recorded at 1 m depth in a water column of approximately 2.5 m above a muddy bottom. SPL and  PVL of the egg were also recorded in a glass aquarium with a water depth of 40 cm.
DOI: 10.5061/dryad.sf0nn/3
title: Recordings used for Figure 5

description: Propagation of sound pressure of the noise egg placed in a glass aquarium (See Fig. 3 for set-up). Absolute SPL was recorded at 10, 40 and 70 cm from the egg at two heights (H): 10 cm and 20 cm from the bottom. Recordings were made in water depths (D) of 30 cm and 40 cm. Recordings of ambient noise were made in the middle of the aquarium (40cm from the egg) and 20cm from the side (10 and 70cm from the egg) in the same water depths.
DOI: 10.5061/dryad.sf0nn/4
title: Recordings used for Figure 6

description: Propagation of particle velocity of the noise egg placed in a glass aquarium (See Fig. 3 for set-up). Relative PVL was recorded at 10, 40 and 70 cm from the egg at two heights (H): 10 cm and 20 cm from the bottom. Recordings were made in water depths (D) of 30 cm and 40 cm. Recordings of ambient noise were made in the middle of the aquarium (40cm from the egg) and 20cm from the side (10 and 70cm from the egg) in the same water depths.
DOI: 10.5061/dryad.sf0nn/5
title: Recordings used for Supplementary Fig1

description: Fig. S1. Recordings of particle velocity of a noise egg in a large aquarium measured for the egg used in the set-up (for description of the set-up, see material and methods). The noise egg was placed in the middle of the aquarium with its centre at a depth of 15 cm in 40 cm water. PVL was measured at three different depths: 10 cm (Z = -10), 20 cm (Z = 0) and 30 cm (Z = 10) and at four different distances (Y): 10, 20, 30 and 40 cm) to the right from the egg.
DOI: 10.5061/dryad.sf0nn/6
title: Recordings used for Suppl Figure 2

description: Recordings of different anthropogenic and natural sounds for comparison with the noise egg. Sounds were recorded in a shallow bay close to IMR Austevoll, Norway. All sounds were recorded with the same  SM2+ recorder (www.wildlifeacoustics.com, Wildlife Acoustics, Inc., Maynard MA, USA; Sampling rate 48 kHz, to 16 bit WAV, 2 Hz high-pass filter, -115dBV equivalent input noise) and a standard hydrophone (HTI-96-MIN: Recording bandwidth: 2Hz – 48kHz, Sensitivity: -165dB re: 1 V/uPa).
DOI: 10.5061/dryad.v033k/1
title: Cinclosoma Coordinates

description: Geneland Infile: Coordinates file has 2 columns for spatial coordinates (long, lat), with no missing data, comma delimited
DOI: 10.5061/dryad.v033k/2
title: Cinclosoma _Codominant

description: Geneland Infile: Diploid genotype file for has 22 columns (11 nulear loci), sequencing data converted to allelic data, missing data= NA, comma delimited.
DOI: 10.5061/dryad.v033k/3
title: Cinclosoma_IM_in

description: IMa2 infile: 2 populations (Cinclosoma castanotum and Cinclosoma clarum), 11 nuclear and 1 mtDNA locus.
DOI: 10.5061/dryad.v033k/4
title: Cinclosoma_noST_SB_in

description: IMa2 infile with putative C. clarum fordianum removed: 2 populations (Cinclosoma castanotum and Cinclosoma clarum), 11 nuclear and 1 mtDNA locus.
DOI: 10.5061/dryad.v32df/1
title: Bumblebee occurrence along different habitats

description: This data contains bumblebee occurrences in different habitats in 10 sites along Sweden. Five of the sites have powerlines on it.
DOI: 10.5061/dryad.vs14m/1
title: Datasets and analysis used in this study

description: SNP and microsatellite genotyping, STRUCTURE and DIYABC input files used in this study
DOI: 10.5061/dryad.02rg3/1
title: Badescuetal-GEE-Spreadsheet

description: These are the data on which we ran all of the Generalized Estimating Equations analyses, to see how natal attraction and infant handling correlated with nursing rates, maternal feeding time, stable nitrogen isotope difference, maternal parity, infant age, and infant sex.
DOI: 10.5061/dryad.223p4/1
title: 2012_RT_Plots

description: The number of seedlings that emerged and survived in each subplot of our 2012 reciprocal transplant in which we planted dune, non-dune and hybrid seeds into a site in the dunes and a site in the non-dune habitat (sand sheet) at Great Sand Dunes National Park and Preserve.
DOI: 10.5061/dryad.223p4/2
title: 2012_RT_Plants_full

description: Data (height, day to first flower, number of seeds, etc) for each plant that survived in our 2012 reciprocal transplant
DOI: 10.5061/dryad.223p4/3
title: 2012_RT_Aster

description: Data (emergence, survival, number of flowers, number of seeds) for each seed planted in our 2012 reciprocal transplant formatted for an ASTER analysis
DOI: 10.5061/dryad.223p4/4
title: 2012_RT_FT_survival

description: The period during which each plant that survived in our 2012 reciprocal transplant flowered (formatted for a survival analysis)
DOI: 10.5061/dryad.223p4/5
title: 2012_Timelapse_FT_numbers

description: The number of flowers photographed by 8 timelapse cameras (DG4, DG5, Updune, 1363, 2001, NDG2, NDG3, NDG4) each day. Cameras DG4 and DG5 were in the same site, which is called DRT. Cameras NDG2, NDG3 and NDG4 were in the same site, which is called NRT. See Fig S1 for site information.
DOI: 10.5061/dryad.223p4/6
title: 2012_Pollinators

description: Collection information and (morpho)species identifications for potential pollinators collected at Great Sand Dunes National Park and Preserve
DOI: 10.5061/dryad.2md79/1
title: data

description: Pedigree, Bd-load, Weight, Development time (dates and temperatures) and microsatellite data used in our article are shown in different sheets of this excel file. How we used each dataset is detailed in materials and methods section of our article. Please do not hesitate to contact us to request further information.
DOI: 10.5061/dryad.450dp/1
title: Deparia_matK+rbcL

description: matK + rbcL alignment includes Deparia and Eupolypod II outgroups (the partitions are detailed in the nexus file)
DOI: 10.5517/ccdc.csd.cc21f0tb
title: CCDC 1889351: Experimental Crystal Structure Determination

description: Related Article: Xiaoming Yang, Xinyu Lin, Yanna Wang, Lin Wang, Weijing Zhang, Zhimin Li, Tonglai Zhang|2019|New J.Chem.|43|19180|doi:10.1039/C9NJ04613E
DOI: 10.5517/ccdc.csd.cc21f0vc
title: CCDC 1889352: Experimental Crystal Structure Determination

description: Related Article: Xiaoming Yang, Xinyu Lin, Yanna Wang, Lin Wang, Weijing Zhang, Zhimin Li, Tonglai Zhang|2019|New J.Chem.|43|19180|doi:10.1039/C9NJ04613E
DOI: 10.18749/dodis-36976
title: dodis.ch/36976
DOI: 10.18749/dodis-36977
title: dodis.ch/36977
DOI: 10.18749/dodis-36978
title: dodis.ch/36978
DOI: 10.18749/dodis-36979
title: dodis.ch/36979
DOI: 10.18749/dodis-36981
title: dodis.ch/36981
DOI: 10.18749/dodis-38896
title: dodis.ch/38896
DOI: 10.18749/dodis-38900
title: dodis.ch/38900
DOI: 10.18749/dodis-38902
title: dodis.ch/38902
DOI: 10.18749/dodis-38903
title: dodis.ch/38903
DOI: 10.18749/dodis-39648
title: dodis.ch/39648
DOI: 10.18749/dodis-39649
title: dodis.ch/39649
DOI: 10.18749/dodis-39650
title: dodis.ch/39650
DOI: 10.5517/ccdc.csd.cc21lps4
title: CCDC 1894806: Experimental Crystal Structure Determination

description: Related Article: Natalie Tober, Thorsten Rieth, Matthias Lehmann, Heiner Detert, |2019|Chem.-Eur.J.|25|15295|doi:10.1002/chem.201902975
DOI: 10.5517/ccdc.csd.cc21rn9s
title: CCDC 1899565: Experimental Crystal Structure Determination

description: Related Article: Chengming Nie, Wenjun Ni, Lunlun Gong, Jian Jiang, Junhui Wang, Mei Wang|2019|J.Mater.Chem.A|7|27432|doi:10.1039/C9TA10479H
DOI: 10.18749/dodis-36982
title: dodis.ch/36982
DOI: 10.18749/dodis-36983
title: dodis.ch/36983
DOI: 10.18749/dodis-36984
title: dodis.ch/36984
DOI: 10.18749/dodis-36985
title: dodis.ch/36985
DOI: 10.18749/dodis-36986
title: dodis.ch/36986
DOI: 10.18749/dodis-36987
title: dodis.ch/36987
DOI: 10.18749/dodis-38904
title: dodis.ch/38904
DOI: 10.18749/dodis-39652
title: dodis.ch/39652
DOI: 10.18749/dodis-39653
title: dodis.ch/39653
DOI: 10.18749/dodis-39654
title: dodis.ch/39654
DOI: 10.18749/dodis-36980
title: dodis.ch/36980
DOI: 10.18749/dodis-36988
title: dodis.ch/36988
DOI: 10.18749/dodis-36989
title: dodis.ch/36989
DOI: 10.18749/dodis-36990
title: dodis.ch/36990
DOI: 10.18749/dodis-36991
title: dodis.ch/36991
DOI: 10.18749/dodis-36992
title: dodis.ch/36992