cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dxr7kywjgn
title: Heat-avoidance behavior associates with thermal sensitivity rather than tolerance in aphid assemblages

description: How to predict animals’ heat-avoidance behaviors is critical since behavior stands the first line for animals dealing with frequent heat events under ongoing climate warming. However, the discrepancy between the scarcity of research on heat-avoidance behaviors and the commonness of eco-physiological data for thermal tolerance and for thermal sensitivity such as the temperature-dependent survival time makes it difficult to link physiologically thermal traits to heat-avoidance behavior. Aphids usually suck plant sap on a fixed site on the host plants at moderate temperatures, but they will leave and seek cooler feeding sites under stressful temperatures. Here we take the cereal aphid assemblages comprising different species with various development stages as a model system. We tested the hypotheses that heat tolerance (critical thermal maximum, CTmax) or heat sensitivity (temperature-dependent declining rate of survival time, similarly hereinafter) would associate with the temperature at which aphid activate heat-avoidance behavior. Specifically, we hypothesized the aphids with less heat tolerance or greater heat sensitivity would take a lower heat risk by leaving the host plant earlier. By mimicking the linear increase in ambient temperature during the daytime, we measured the CTmax and the heat-avoidance temperature (HAT, at which aphids leave the host plant to find cooler places) to understand their heat tolerance and heat-avoidance behavior. Then, we tested the survival time of aphids at different temperatures and calculated the slope of survival time declining with temperature to assess their heat sensitivity (HS). Finally, we examined the relationships between CTmax and HAT and between HS and HAT to understand if the heat-avoidance behavior associates with heat tolerance or with heat sensitivity. The results showed that HS and HAT had a strong correlation, with more heat sensitive individuals displayed lower HAT. By contrast, CTmax and HAT had a weak correlation. Our results thus provide evidence that heat sensitivity is a more reliable indicator than thermal tolerance linking with the heat-avoidance behavior in the aphid assemblages. Most existing studies use the indexes related to thermal tolerance to predict warming impacts. Our findings highlight the urgency to incorporate thermal sensitivity when predicting animal responses to climate change.
DOI: 10.17632/wk5yhyh76c
title: Spatial Slip Rate Partitioning Along the Xianshuihe Fault Zone, Eastern Tibetan Plateau

description: This dataset includes DEM data of the research sites. People who want to use these data in their research must cite this dataset correctly.
DOI: 10.17632/xwc7ncn8nc
title: Dynamic Trade, Education and Intergenerational Inequality

description: This replication package contains all the necessary files and instructions to replicate the results presented in the paper "Dynamic Trade, Education and Intergenerational Inequality" published in the Journal of International Economics. The package includes data, code, and detailed instructions to reproduce the figures and tables in the paper.
DOI: 10.6084/m9.figshare.13515944.v2
title: Research Trends Analysis Using Text Mining in Construction Management:2000-2020

description: In this dataset, you can find the all webofscience data used in the research. Also in the excel file "Researchtrends_data" you can find the cluster result of each file which is analysed in Citespace
DOI: 10.6084/m9.figshare.20347437.v1
title: 6_cities_safety_margin_risk_proportions.csv

description: Contains the total number of species in each city, the number and proportions of species predicted to exceed their safety margins (no_safe) and at high risk of climate change, and the number of species currently experiencing safe climate conditions and predicted to have low risk of future climate change for all climate variables, time periods (2050 and 2070) and RCP (4.5 and 6.0).
DOI: 10.6084/m9.figshare.5096392.v1
title: Koala Project Sequence Raw Data

description: Raw 16s sequencing data from koala fecal material
DOI: 10.17632/bkr8dsp266
title: Tissue-Mimicking Materials for Breast Ultrasound Elastography Phantoms: A Systematic Review

description: Supplementary document
DOI: 10.6084/m9.figshare.19403390.v2
title: Human visual processing during walking: dissociable pre- and post-stimulus influences

description: Datasets & Codes for the paper:<br>Human visual processing during walking: dissociable pre- and post-stimulus influences Xinyu Chen1, Liyu Cao1&2*, & Barbara F Haendel1&3<br>1 Department of Psychology (III), Julius-Maximilians-Universität Würzburg, Würzburg, 97070, Germany2Department of Psychology and Behavioral Science, Zhejiang University, Hangzhou, 310007, China3Neurology department, University Hospital Würzburg, Würzburg, 97080, Germany
DOI: 10.6084/m9.figshare.14608110.v2
title: mus_brain_H3K27ac_3mon_chr2.bw

description: mus brain H3K27ac<br>
DOI: 10.17632/tvbt76bnbf
title: A Study of Chaguza et al "Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection"

description: Supplementary Dataset for the manuscript "Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection"
DOI: 10.6084/m9.figshare.27024817.v1
title: Stack Trace and Summary-Based

description: Stack Trace and Summary-Based
DOI: 10.17632/2j7n97887d
title: Oxidized/deamidated-ceruloplasmin dysregulates choroid plexus epithelial cells functionality and barrier properties via RGD-recognizing integrin binding

description: Raw data that generated the graphs in the figures of the paper "Zanardi A, Barbariga M, Conti A, Vegliani F, Curnis F, Alessio M. Oxidized/deamidated-ceruloplasmin dysregulates choroid plexus epithelial cells functionality and barrier properties via RGD-recognizing integrin binding. Neurobiol Dis, 158: 105475, 2021" (DOI: 10.1016/j.nbd.2021.105474 ). These data were not included in the Supplementary Data associated to the pubblication in the web site of the journal.
DOI: 10.6084/m9.figshare.11793624.v1
title: Supplementary Material for: Impact of Intravitreal Ranibizumab Therapy on Vision Outcomes in Diabetic Macular Edema Patients: A Meta-Analysis

description: <b><i>Purpose:</i></b> Evaluation of the impact of the injection frequency of ranibizumab on best-corrected visual acuity (BCVA) outcomes in patients with diabetic macular edema (DME). <b><i>Methods:</i></b> A meta-analysis of randomized controlled trials (RCTs) and real-world studies was performed to quantify the effect of ranibizumab treatment on BCVA and central foveal thickness (CFT) in DME as well as the relationship between the number of injections and the change in BCVA/CFT. <b><i>Results:</i></b> All combined sources (29 RCTs and 11 real-life studies) showed a significant increase in BCVA from baseline following anti-vascular endothelial growth factor (VEGF) treatment (8.2, 9.4, and 10.3 ETDRS letters gained after 12, 24, and 36 months of ranibizumab treatment, respectively). The largest changes in BCVA were observed in RCTs and the smallest in real-life studies at 12 months. A significant relationship was found between the number of injections and change in BCVA at 12 months. <b><i>Conclusions:</i></b> Inferior vision outcomes were observed in clinical practice compared with RCTs and might be partly attributable to administration of fewer anti-VEGF injections. Physicians should be aware that early and appropriate anti-VEGF treatment regimens are necessary to obtain the results reported in RCTs and help prevent irreversible vision loss in DME patients.
DOI: 10.6084/m9.figshare.26969017.v1
title: Supplementary Material for: Causal Associations Between Tea Consumption and REM Sleep Behavior Disorder: A Mendelian Randomization Study

description: Background: Previous studies have shown that tea consumption may have a protective effect against neurodegenerative diseases. However, the exact causal relationship between tea consumption and the precursor stages of certain neurodegenerative diseases, namely REM sleep behavior disorder (RBD), remains unclear. To evaluate the causal association between tea consumption and RBD, we employed a Mendelian randomization study.
Methods: We identified genetic instrumental variables that are significantly associated with tea consumption through genome-wide association studies (GWAS) in European populations. Bidirectional two-sample Mendelian randomization was utilized to determine the causal relationship between tea consumption and RBD, while sensitivity analyses were further employed to evaluate the robustness of the results. The multivariate Mendelian randomization method was used to assess the influence of relevant confounding factors on the results.
Results: In the MR analysis using the inverse variance weighting method, a significant causal relationship between tea consumption and RBD was observed (OR=0.046, 95% CI 0.004-0.563, p=0.016). The consistency of findings across maximum likelihood, MR PRESSO, and multivariate MR after adjusting for potential confounding further supports this causal association. Sensitivity analyses revealed no evidence of heterogeneity or pleiotropy. 
Conclusions: The findings of our study demonstrate a robust causal association between tea consumption and RBD, indicating that tea consumption may serve as a protective factor against the development of RBD.
DOI: 10.17632/gcgyxxpxdr
title: Data for: Short Video Game Play Improves Executive Function in the Oldest Old Living in Residential Care

description: Demographic and outcome data.
DOI: 10.6084/m9.figshare.21972659.v1
title: mocksample

description: dataset use for modelling
DOI: 10.6084/m9.figshare.23294909.v1
title: Complete plasmid sequences and simulated short-read plasmid predicted bins

description: - Complete plasmid sequences (*.fna) derived from Arredondo-Alonso et al. 2021 https://doi.org/10.1093/gigascience/giab079 <br> - Simulated short-read predicted plasmid bins (*perfect_bin.fasta)
DOI: 10.17632/7k99v7gvkg
title: AA Tofacitinib Supplementary Table Final

description: Alopecia areata recurrence patterns in children and young adults while on systemic tofacitinib therapy
DOI: 10.6084/m9.figshare.16757131.v1
title: Supplementary Material for: Diagnostic Yield and Therapeutic Consequences of Targeted Next-Generation Sequencing in Sporadic Primary Immunodeficiency

description: <b><i>Introduction:</i></b> Primary immunodeficiencies (PIDs) are a heterogeneous group of disorders characterized by increased susceptibility to infections, immune dysregulation, and/or malignancy. Genetic studies, especially during the last decade, led to a better understanding of the pathogenesis of primary immunodeficiencies and contributed to their classification into distinct monogenic disorders falling under one of the &gt;430 currently known inborn errors of immunity (IEI). The growing availability of molecular genetic testing resulted in the increasing identification of patients with IEI. Here, we evaluated the diagnostic yield and the clinical consequences of targeted next-generation sequencing (tNGS) in a cohort of 294 primary immunodeficiency patients, primarily consisting of cases with sporadic primary antibody deficiency. <b><i>Method:</i></b> We have custom designed a tNGS panel to sequence a cohort of PID patients. Agilent’s HaloPlex Target Enrichment System for Illumina was used for DNA target enrichment. <b><i>Results:</i></b> tNGS identified a definite or predicted pathogenic variant in 15.3% of patients. The highest diagnostic rate was observed among patients with combined immunodeficiency or immune dysregulation, for whom genetic diagnosis may affect therapeutic decision-making. <b><i>Conclusion:</i></b> Next-generation sequencing has changed diagnostic assignment and paved the way for targeted therapeutic intervention with agents directed at reverting the disease-causing molecular abnormality or its pathophysiological consequences. Therefore, such targeted therapies and identifying the genetic basis of PID can be essential for patients with manifested immune dysregulation as conventional immunomodulatory regimens may exert an immunosuppressive effect, aggravating their immunodeficiency or may only inadequately control autoimmune or lymphoproliferative manifestations.
DOI: 10.6084/m9.figshare.4484435.v5
title: SPATIAL ANALYSIS OF HANDWRITTEN TEXTS AS AN INDICATOR OF COGNITIVE CONTROL

description: We compared the heterogeneity of handwritten texts in tasks with different cognitive demands; transcription and exposition about an autobiographical episode. The heterogeneity of texts was analyzed with lacunarity, a non-linear measure of geometric patterns. Lacunarity of handwritten texts was significantly lower in transcription than in exposition. These effects were verified in a task that compared a veridical and a fictitious version of a personal event. Lacunarity was lower in veridical than fictitious texts. We contend that differences in lacunarity of handwritten texts reveal the degree of automaticity in handwriting.
DOI: 10.6084/m9.figshare.13414910.v2
title: Articles and Selected Posts and Outputs Published in 2020

description: I have shared a basic sheet listing a selection of my articles, blog posts and outputs I published openly during 2020. V1 is just a dump that would need sorting in chronological order or by type, but at least there's some kind of record. <br><br><br>
DOI: 10.6084/m9.figshare.19793758.v4
title: Supplementary Material

description: Supplementary Material for 'Pangenome evolution in Escherichia coli is sequence type, not phylogroup, specific'. <br> pangenome_data.zip contains (for each ST): <br> <strong>ST_updated_download.txt</strong> - the download list from Enterobase including accession numbers, Bio Project IDs and sample IDs. <br> <strong>ST_gene_presence_absence_roary.csv</strong> - gene presence/absence matrix output by Panaroo <br> <strong>ST_pan_genome_reference.fa</strong> - linear reference genome output by Panaroo
DOI: 10.6084/m9.figshare.27935715.v1
title: manta-electronics

description: manta electronics
DOI: 10.17632/rptm733r47
title: DOS_photo_data

description: This dataset “DOS_photo_data”contains the original data of all the figures in the submitted article“Contrasting molecular structures and photooxidation behaviors between dissolved organic sulfur released from rice straw-biochar and composted rice straw” for Chemical Geology.
DOI: 10.6084/m9.figshare.14923071.v1
title: Clinical characteristics and radiological domains among patients with recurrent strokes-a descriptive cross-sectional study from a tertiary care center in central Nepal

description: Data of recurrent stroke
DOI: 10.6084/m9.figshare.3512534.v1
title: Appendix C. Results from the principal-components analysis on land use and geology variables.

description: Results from the principal-components analysis on land use and geology variables.
DOI: 10.17632/5ynj2p59wd
title: Water level monitoring

description: Water level monitor that have a sensor that monitors the amount of water in the tank to prevent overflow and wastage
DOI: 10.6084/m9.figshare.17027021.v1
title: Dependence of electron temperature in the 2DEG on the applied power

description: Electron temperature as a function of applied power (i.e. heat leak), derived from the thermal model based on thermal transport measurements.<br>
DOI: 10.6084/m9.figshare.7333715.v1
title: Supplementary Material for: Genome-Wide Analysis of mRNAs and lncRNAs of Intramuscular Fat Related to Lipid Metabolism in Two Pig Breeds

description: <b><i>Background/Aims:</i></b> Long non-coding RNAs (lncRNAs) can regulate adipogenesis and lipid accumulation. Intramuscular fat deposition appears to vary in different pig breeds, and the regulation mechanism has not yet been fully elucidated at molecular level. Moreover, little is known about the function and profile of lncRNAs in intramuscular fat deposition and metabolism in pig. The aim of this study was thus to explore the regulatory functions of lncRNAs in intramuscular fat deposition. <b><i>Methods:</i></b> In this study, Laiwu (LW) pig and Large White (LY) pig with significant difference in fat deposition were selected for use. RNA-seq technology and bioinformatics methods were used to comparatively analyze the gene expression profiles of intramuscular fat between LW and LY pigs to identify key mRNAs and lncRNAs associated with lipid metabolism and adipogenesis. Real-time fluorescence-based quantitative PCR was applied to verify the expression level of the differentially expressed mRNAs and lncRNAs. <b><i>Results:</i></b> A total of 513 mRNAs and 55 lncRNAs were differentially expressed between two pig breeds. By co-expression network construction as well as cis- and trans-regulated target gene analysis, 31 key lncRNAs were identified. Gene Ontology and KEGG pathway analyses revealed that differentially expressed genes and lncRNAs were mainly involved in the biological processes and pathways related to adipogenesis and lipid metabolism. <b><i>Conclusion:</i></b> <i>XLOC_046142, XLOC_004398</i> and <i>XLOC_015408</i> may target <i>MAPKAPK2, NR1D2</i> and <i>AKR1C4</i>, respectively, and play critical regulatory roles in intramuscular adipogenesis and lipid accumulation in pig. <i>XLOC_064871</i> and <i>XLOC_011001</i> may play a role in lipid metabolism-related disease via regulating <i>TRIB3</i> and <i>BRCA1</i>. This study provides a valuable resource for lncRNA study and improves our understanding of the biological roles of lipid metabolism- related genes and molecular mechanism of intramuscular fat metabolism and deposition.
DOI: 10.17632/ctfpghww2p
title: Mendeley Supplemental Table 1&2, Figure 1

description: Mendeley Supplemental Table 1. “Therapeutic outcomes based on vaccination status.” Mendeley Supplemental Tables 2a-c. “Therapeutic outcomes based on Vaccine Type.” Mendeley Supplemental Figure 1. “Flowchart for selecting study participants.”
DOI: 10.17632/yh89www54k
title: 71 SE United States cities bird richness

description: Question: How do components of urban landscape composition and configuration affect urban bird richness and feeding guild diversity?

- species_counts_Americas.csv
Provides species abundance data for 71 cities in the southeastern U.S. Species records were downloaded from GBIF for class Aves and cropped to city boundaries delineated by the CDC's 500 Cities dataset. Records were cleaned by removing those within 1000m of a biodiversity institution ('CoordinateCleaner' R package (Zizka et al. 2019)) and those that do not inhabit North or South America. The first column labeled 'NA' indicates the number of records in each city that were not classified to the species level. See publication code_data prep.Rmd for production of this data.

- species_counts_Americas_diet
Provides the same information as species_counts_Americas, but includes information on feeding guild of each species, which we manually categorized based on information provided by the Cornell Lab of Ornithology and the Audubon guide of North American birds.

- citydata.csv
Provides data on landscape metrics, bird richness, and feeding guild diversity for 71 cities in the southeast United States. Landscape classification derived from NLCD 2016 land cover data. Landscape metrics calculated using the 'landscapemetrics' R package, and richness/diversity calculated using 'vegan' R package. Data used to model bird richness in 71 cities using different combinations of landscape metrics. (See modeling code in 'publication code_analysis.Rmd')
areamn40=mean forest patch area
areamn90=mean wetland patch area
pland20=% developed land cover
clumpy40=forest clumpiness
clumpy90=wetland clumpiness
edge40=forest edge density
edge90=wetland edge density
contag=contagion
sidi = simpson's diversity
n = # observations
S.rarefy = rarefied species richness
S.rarefy.se = rarefied species richness standard error
div.simpson = simpson's diversity index (for birds)
insectivores.rarefy = rarefied insectivore richness
granivores.rarefy = rarefied granivore richness
carnivore.rarefy = rarefied carnivore richness
omnivore.rarefy = rarefied omnivore richness
aquatic_invertebrates.rarefy = rarefied aquatic invertebrate feeders richness
shannon.functionalDiv = feeding guild diversity (Shannon's diversity index)
PC1 = PCA axis 1
PC2 = PCA axis 2
pland_40 = % forest area

Results: Landscape composition and configuration affect urban bird richness, but forest edge density is the only landscape metric that had a consistently significant negative effect on total rarefied richness, rarefied richness of individual feeding guilds, and feeding guild diversity.
DOI: 10.6084/m9.figshare.28092671.v1
title: Hydro-geochemistry and Sr, C, S, and O isotopic compositions of major rivers on the Tibetan Plateau

description: Hydro-geochemistry and Sr, C, S, and O isotopic compositions of major rivers on the Tibetan Plateau, including the main channels and tributaries of Nu Jiang River (upper reaches of Salween River), Yarlung Tsangpo River (upper reaches of Brahmaputra River), the upper Yellow River, the upper Yangtze River and Lantsang Jiang River (upper reaches of Mekong River).
DOI: 10.17632/8wdzsnfc66
title: Supplementary Material: Database to "Effectiveness of water-related adaptation decreases with increasing warming"

description: This database contains datapoints collected out of 99 studies that assess the effectiveness of water-related adaptation to reduce projected risk. The database provides a consistent mapping of the share of risk that is reduced and provides a translation of the scenario and model assumptions of the individual studies into global warming levels.
DOI: 10.6084/m9.figshare.25749483.v1
title: Dynamic Vortex Height Evolution during RI Dataset

description: The namelist files present are necessary to reproduce the CM1 simulations analyzed. The time series, DHOV, and azimuthal profiles from the WRF ensemble contain all the data necessary for all runs to calculate the metrics analyzed in this work. DHOV calculations from version v3k of TC-RADAR are provided as well. The data contained here is analyzed in an article titled "Dynamic Vortex Height Evolution during Tropical Cyclone Rapid Intensification" to be published at JGR: Atmospheres.