cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ukjrmz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041317-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtq6ur
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia sissoo",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041318-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29640842
title: Vegetation response to canopy gap creation and herbivore exclusion in exotic <i>Pinus radiata </i>plantation forest

description: Introduction: Globally, there is significant potential to transition exotic <i>Pinus</i> plantation to native forest for ecosystem restoration and to retire plantations established in locations unsuitable for harvest. The possibility of transition is suggested by the frequent occurrence of understories of native vegetation. Transitions may be promoted by the creation of canopy gaps, however more research is required on the optimal size of gaps and how other interventions such as herbivore exclusion influence transitions.Objectives: This research explored how different canopy gap treatments and herbivore exclusion in exotic plantation forest influenced regenerating communities of native and exotic vegetation. Methods: We compared natural vegetation regeneration using a randomised block design with three replicates of three different widths of strip harvesting and an unharvested control in a mid-rotation (14-years-old)<i> Pinus radiata</i> plantation in Aotearoa New Zealand. Strips were 50 m long, and the strip widths ranged from 9 – 27 m. Herbivores were excluded from half of each strip via the installation of deer fences.Results: Pioneering vegetation quickly established following removal of canopy trees. The narrow strip produced the greatest species richness and total importance value of native vegetation regeneration, primarily composed of herbaceous species. However, there was no significant difference among the treatments for native trees and shrubs. Exotic grasses grew rapidly following canopy removal; however, their importance value was significantly lower in the narrow strip when compared to the medium and wide strips. Herbivore exclusion led to an increase in exotic grasses and had a negative effect on regeneration of native vegetation in the medium and wide strips. Abiotic variables had a significant influence on exotic regeneration but did not have an influence on native regeneration. While mean annual temperature and diurnal temperature range had varying effects on exotic species richness, importance value, and exotic grass importance value, available light had a strong positive effect on all exotic vegetation. Conclusions: The narrow strip encouraged the most native vegetation regeneration while lower available light compared to the medium and wide strips reduced competition with vigorous exotic grasses.<br>
DOI: 10.6084/m9.figshare.29640842.v1
title: Vegetation response to canopy gap creation and herbivore exclusion in exotic <i>Pinus radiata </i>plantation forest

description: Introduction: Globally, there is significant potential to transition exotic <i>Pinus</i> plantation to native forest for ecosystem restoration and to retire plantations established in locations unsuitable for harvest. The possibility of transition is suggested by the frequent occurrence of understories of native vegetation. Transitions may be promoted by the creation of canopy gaps, however more research is required on the optimal size of gaps and how other interventions such as herbivore exclusion influence transitions.Objectives: This research explored how different canopy gap treatments and herbivore exclusion in exotic plantation forest influenced regenerating communities of native and exotic vegetation. Methods: We compared natural vegetation regeneration using a randomised block design with three replicates of three different widths of strip harvesting and an unharvested control in a mid-rotation (14-years-old)<i> Pinus radiata</i> plantation in Aotearoa New Zealand. Strips were 50 m long, and the strip widths ranged from 9 – 27 m. Herbivores were excluded from half of each strip via the installation of deer fences.Results: Pioneering vegetation quickly established following removal of canopy trees. The narrow strip produced the greatest species richness and total importance value of native vegetation regeneration, primarily composed of herbaceous species. However, there was no significant difference among the treatments for native trees and shrubs. Exotic grasses grew rapidly following canopy removal; however, their importance value was significantly lower in the narrow strip when compared to the medium and wide strips. Herbivore exclusion led to an increase in exotic grasses and had a negative effect on regeneration of native vegetation in the medium and wide strips. Abiotic variables had a significant influence on exotic regeneration but did not have an influence on native regeneration. While mean annual temperature and diurnal temperature range had varying effects on exotic species richness, importance value, and exotic grass importance value, available light had a strong positive effect on all exotic vegetation. Conclusions: The narrow strip encouraged the most native vegetation regeneration while lower available light compared to the medium and wide strips reduced competition with vigorous exotic grasses.<br>
DOI: 10.15468/dl.3ky3pa
title: Occurrence Download

description: A dataset containing 663637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres tristis",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 663637 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041283-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9t26w
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paratilapia polleni)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041320-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16415273
title: Appendix 1. Character descriptions and states used in the present analysis (continued on subsequent pages). Characters and states newly proposed in this study, i.e., not included in Carvalho & Kury (2024a), are marked with an asterisk (*). N/O = non-optimized (unambiguous character change).

description: Appendix 1. Character descriptions and states used in the present analysis (continued on subsequent pages). Characters and states newly proposed in this study, i.e., not included in Carvalho & Kury (2024a), are marked with an asterisk (*). N/O = non-optimized (unambiguous character change).
DOI: 10.5281/zenodo.16415274
title: Appendix 1. Character descriptions and states used in the present analysis (continued on subsequent pages). Characters and states newly proposed in this study, i.e., not included in Carvalho & Kury (2024a), are marked with an asterisk (*). N/O = non-optimized (unambiguous character change).

description: Appendix 1. Character descriptions and states used in the present analysis (continued on subsequent pages). Characters and states newly proposed in this study, i.e., not included in Carvalho & Kury (2024a), are marked with an asterisk (*). N/O = non-optimized (unambiguous character change).
DOI: 10.15468/dl.49727r
title: Occurrence Download

description: A dataset containing 816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Porzana carolina)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 816 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041319-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mvseq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041321-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s98hj9
title: Occurrence Download

description: A dataset containing 4205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triticum urartu"
 ]
}

 The dataset includes 4205 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041322-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9kdk6
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041324-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5ggvz
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia robusta",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041323-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38da53
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres tristis",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041326-250717081556266/datasets/export for details.
DOI: 10.15468/dl.k75h5r
title: Occurrence Download

description: A dataset containing 946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres tristis",
 "Country is Jordan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 946 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041325-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2hjj6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Podilymbus podiceps)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041327-250717081556266/datasets/export for details.
DOI: 10.15468/dl.c7vyz4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbatula cobdonensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041330-250717081556266/datasets/export for details.
DOI: 10.15468/dl.yqcr3h
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia robusta",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 116 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041331-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.judna4
title: Occurrence Download

description: A dataset containing 2654 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triticum timopheevii"
 ]
}

 The dataset includes 2654 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041332-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpjd8b
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041334-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4rvkv
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 374 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041336-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvqzn2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Podilymbus podiceps)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041335-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6tt6q6
title: Occurrence Download

description: A dataset containing 21137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipiter brevipes)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 21137 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041339-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzbzrj
title: Occurrence Download

description: A dataset containing 11611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres tristis",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11611 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041341-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6rycu
title: Occurrence Download

description: A dataset containing 21515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipiter gularis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 21515 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041340-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yy96jx
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Millettia dura",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041343-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mh4bed
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Puntius bimaculatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041344-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmfe2u
title: Occurrence Download

description: A dataset containing 1985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres tristis",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1985 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041342-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16214768
title: Journals that publish articles related to biological taxonomy

description: This dataset presents a curated and deduplicated list of scholarly journals relevant to taxonomy and systematics. The journals were identified using SPARQL queries on Wikidata and concept-based filtering from OpenAlex, focusing on key subject areas such as taxonomy, nomenclature, phylogenetics, and systematics.

The dataset combines three complementary sources:





Wikidata Subject Queries: Journals linked to taxonomic concepts (e.g. taxonomy, nomenclature) through main subject (P921) or field of work (P101).




Wikidata Identifier Queries: Journals with IPNI (P2007) or ZooBank (P2008) publication identifiers.




OpenAlex API: Journals tagged with the concept “Taxonomy (biology)” (C58642233).



The results from each source were harmonized and merged. Identifiers and string values from Wikidata were extracted and cleaned, country Q-codes converted to ISO alpha-2 codes, and legacy OpenAlex IDs were normalized. Duplicates were removed based on combined Wikidata and OpenAlex identifiers.

The script used to create this is list_journals.py in the src/supply/ directory of repo https://github.com/AgentschapPlantentuinMeise/Mapping-taxonomists. It can be rerun to regenerate this dataset. It requires a config.json file with a valid email address for OpenAlex API access and access to the download and prep_journals helper modules.
description: Each row represents a single, unique journal. The columns are:





title: Name of the journal (from Wikidata)




wikidataURL: Unique Wikidata identifier (URL-formatted)




ISSN-L: Linking ISSN, if available




IPNIpubID: IPNI publication identifier (when present)




ZooBankPubID: ZooBank publication identifier (when present)




openAlexID: OpenAlex identifier for the journal




dissolvedYear: Year the journal ceased publication, if known




dissolved: Boolean indicating whether the journal was dissolved before 2013




source: Provenance of the entry (e.g., “Wikidata taxonomic subject”, “IPNI or ZooBank ID”, “OpenAlex taxonomy concept”)



File Information





Format: CSV (UTF-8 encoded)




File name: journals_deduplicated.csv




Encoding: Comma-separated, no index column