cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/v23-84t-kqm
title: Sagina procumbens L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-aen-djl
title: Persicaria lapathifolia (L.) Gray

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-gj6-p6e
title: Plantae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-lzf-kdz
title: Rumex longifolius DC.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-sla-ta3
title: Potentilla norvegica L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-v8q-8v8
title: Salix cinerea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-y7v-kap
title: Dryas octopetala L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-0px-tyc
title: Alnus incana f. subsp. incana var. incana f. laciniata

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-4el-rht
title: Eleocharis uniglumis (Link) Schult.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-5ve-48t
title: Alchemilla filicaulis x var. filicaulis × var. vestita

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-976-wqx
title: Sisymbrium altissimum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v23-1kr-7pz
title: Salix myrtilloides L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-b8y-agn
title: Amelanchier × spicata (Lam.) K. Koch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30930710
title: RNA-seq results of mESCs overexpressing Zfand3

description: AN1-type domain 3 (Zfand3) is a zinc finger protein. However, the function of Zfand3 in ESCs remains poorly understood. Mouse embryonic stem cells T4 was used to overexpress Zfand3 and RNA-seq was performed.
DOI: 10.6084/m9.figshare.30930710.v1
title: RNA-seq results of mESCs overexpressing Zfand3

description: AN1-type domain 3 (Zfand3) is a zinc finger protein. However, the function of Zfand3 in ESCs remains poorly understood. Mouse embryonic stem cells T4 was used to overexpress Zfand3 and RNA-seq was performed.
DOI: 10.3535/v24-nb6-ts2
title: Asplenium trichomanes subsp. trichomanes

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v24-znp-7x1
title: Corylus avellana L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-4aq-j90
title: Thlaspi arvense L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-5gf-1mx
title: Alchemilla micans Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-akm-ds5
title: Ribes L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-bb3-ey8
title: Alopecurus geniculatus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-mxr-fwh
title: Raphanus raphanistrum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-qv4-emr
title: Alliaria petiolata (M. Bieb.) Cavara & Grande

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-w7l-sd4
title: Hesperis matronalis L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-wkg-72l
title: Chrysosplenium tetrandrum (N. Lund) Th. Fr.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-zj3-jzw
title: Carex cespitosa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-075-vsh
title: Poa angustifolia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-1he-5x1
title: Poa nemoralis L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-7e2-f6n
title: Eleocharis acicularis (L.) Roem. & Schult.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-bq4-l33
title: Carex livida (Wahlenb.) Willd.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v25-vjl-zcb
title: Sagina procumbens L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-cdh-bqz
title: Carex distans L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-eae-b27
title: Goodyera repens (L.) R.Br.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-erd-n9p
title: Carex paleacea Schreb. ex Wahlenb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-l6k-rf9
title: Lotus corniculatus subsp. corniculatus

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-le0-9st
title: Alchemilla glabra Neygenf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-qlh-4dr
title: Equisetum fluviatile L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-qyg-a1h
title: Hylotelephium maximum subsp. maximum

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-rtq-19m
title: Juncus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-rz7-8mn
title: Dryopteris cristata (L.) A. Gray

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-x6g-ph8
title: Fragaria moschata Duchesne

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v26-zcy-mg1
title: Micranthes tenuis (Wahlenb.) Small

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-0m2-bw9
title: Saxifraga aizoides L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-366-31p
title: Lathyrus sylvestris L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-3qa-gq8
title: Poa arctica R.Br.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-43r-6kj
title: Persicaria foliosa (H. Lindb.) Kitag.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-4y0-t8d
title: Dryopteris carthusiana (Vill.) H. P. Fuchs

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-dep-p35
title: Carex nigra subsp. juncea (Fr.) Soó

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-df6-d2j
title: Danthonia decumbens (L.) DC.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-jyn-ecd
title: Viscaria vulgaris Röhl.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-ldg-m3v
title: Potentilla neglecta Baumg.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-m9m-dsq
title: Carex pilulifera L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-mep-g3g
title: Lolium pratense (Huds.) Darbysh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v27-t90-tql
title: Carex aquatilis Wahlenb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-1wj-197
title: Trollius europaeus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-8a7-xp9
title: Carex flava L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-b02-0c3
title: Carex tenuiflora Wahlenb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-nld-ltk
title: Trifolium resupinatum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-prl-zn7
title: Neottia cordata (L.) Rich.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-r5e-l2b
title: Holcus lanatus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-367-n6x
title: Calamagrostis epigejos (L.) Roth

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-7ne-46b
title: Carex panicea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-9p1-ns9
title: Potentilla neglecta Baumg.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-8b8-zyk
title: Lycopodiella inundata (L.) Holub

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-aqb-22m
title: Eleocharis quinqueflora (Hartmann) O.Schwarz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-rxr-vyl
title: Carex ericetorum Pollich

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v28-xgk-ke3
title: Dryopteris filix-mas (L.) Schott

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-ezs-gp5
title: Geum urbanum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-pyn-mak
title: Allium strictum Schrad.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-qss-x69
title: Scleranthus annuus subsp. polycarpos (L.) Bonnier & Layens

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-y0f-d3s
title: Viscaria alpina (L.) G. Don

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-yys-777
title: Chenopodium suecicum Murr

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-hqs-f36
title: Thalictrum flavum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-p7f-t6g
title: Oxybasis rubra (L.) S. Fuentes, Uotila & Borsch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-ptj-mkp
title: Brassica rapa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-rg6-4ax
title: Deschampsia cespitosa (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-stz-w2j
title: Carex chordorrhiza L.f.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-ts6-hel
title: Platanthera bifolia (L.) Rich.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-q31-ym2
title: Viscaria alpina (L.) G. Don

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2a-wfe-hdq
title: Deschampsia cespitosa (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v29-y8w-z4x
title: Lathyrus linifolius (Reichard) Bässler

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-2l4-s8w
title: Oxalis dillenii Jacq.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-ate-2c9
title: Carex media R.Br.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-g1p-nkr
title: Reseda odorata L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-mm4-ewe
title: Najas tenuissima (A.Braun ex Magnus) Magnus

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-r09-365
title: Thlaspi arvense L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-xrb-zxf
title: Juncus articulatus subsp. articulatus

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-3lp-xse
title: Cardamine bulbifera (L.) Crantz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-6fs-kbx
title: Coronilla varia L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-f9z-10x
title: Saxifraga aizoides L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2b-et8-h5a
title: Fragaria vesca L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-twg-z5s
title: Scheuchzeria palustris L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-w9e-1d0
title: Carex chordorrhiza L.f.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2c-zn4-b19
title: Stuckenia pectinata (L.) Börner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-1g4-ws5
title: Sparganium hyperboreum Laest. ex Beurl.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-487-6y2
title: Dactylorhiza majalis subsp. lapponica (Laest. ex Hartm.) H.Sund.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-6mv-rpj
title: Bolboschoenus maritimus (L.) Palla

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-d2x-h60
title: Brassica rapa L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-frl-zwa
title: Sparganium natans L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-jmj-22a
title: Carex aquatilis Wahlenb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-nc7-vet
title: Koeleria pyramidata subsp. pyramidata

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-rag-ate
title: Montia fontana L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-whq-mgb
title: Carex L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2d-zbr-zyt
title: Agrostis capillaris L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2e-2f3-2m3
title: Euphorbia humifusa Willd.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2e-39r-keh
title: Salix L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2e-4t7-yvz
title: Urtica urens L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2e-919-2sv
title: Matteuccia struthiopteris (L.) Tod.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2e-zpx-xvl
title: Bolboschoenus maritimus (L.) Palla

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-j6m-ke5
title: Rumex longifolius DC.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-rc8-z81
title: Rumex crispus L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-ts9-7y1
title: Carex rupestris All.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-x3e-wwd
title: Carex flava L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-xlh-txl
title: Cardamine amara L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-xsp-7tg
title: Dryopteris carthusiana (Vill.) H. P. Fuchs

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2f-ync-vzz
title: Matteuccia struthiopteris (L.) Tod.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v2g-6nh-b99
title: Lepidium campestre (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5281/zenodo.13904329
title: Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches – Source data 2 relative to Figs 3-5, S2-S8

description: .rds files for Chromium (Fig. 3, 5, S2-4, S7) and MARS-seq (Fig. 4, 5, S6, 8) datasets (plus the integrated Chromium / MARS-seq dataset, Fig. S5). The rds files contains only final the analyzed cells, used for all plotting and analysis (all low-quality cells and contaminant cells (see Methods) have been removed). For more detailed description of cells used for both sc-RNA-seq, see respective Method paragraphs. Each .rds file contains metadata that can be used to subset datasets by replicate, region, transgenic origin, cell types, phase… Only the datasets generated in the lab are made available in this repository.

The 3 R scripts contain the codes used for the plotting of all figures. Sc-RNA-seq plots are in majority made using Seurat package functions. Additional plots are made with ggstatplots package or ggplot package and extensions. All library used are listed at the top of the scripts.

The source data table file, classified with a unique tab for each figure panel, contains the data used conjointly with the .rds files to generate all plots using the aforementionned scripts.
DOI: 10.5281/zenodo.13904330
title: Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches – Source data 2 relative to Figs 3-5, S2-S8

description: .rds files for Chromium (Fig. 3, 5, S2-4, S7) and MARS-seq (Fig. 4, 5, S6, 8) datasets (plus the integrated Chromium / MARS-seq dataset, Fig. S5). The rds files contains only final the analyzed cells, used for all plotting and analysis (all low-quality cells and contaminant cells (see Methods) have been removed). For more detailed description of cells used for both sc-RNA-seq, see respective Method paragraphs. Each .rds file contains metadata that can be used to subset datasets by replicate, region, transgenic origin, cell types, phase… Only the datasets generated in the lab are made available in this repository.

The 3 R scripts contain the codes used for the plotting of all figures. Sc-RNA-seq plots are in majority made using Seurat package functions. Additional plots are made with ggstatplots package or ggplot package and extensions. All library used are listed at the top of the scripts.

The source data table file, classified with a unique tab for each figure panel, contains the data used conjointly with the .rds files to generate all plots using the aforementionned scripts.
DOI: 10.15468/dl.yn25f5
title: Occurrence Download

description: A dataset containing 326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Chile",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Podocarpus salignus D.Don"
 ]
}

 The dataset includes 326 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052246-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.