cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9885638.v1
title: Development linear and non-linear QSAR models for predicting AXL kinase inhibitory activity of N-[4-(quinolin-4-yloxy)phenyl]benzenesulfonamides

description: In this research, we used CoMFA, LSSVM and FFANN for creating QSAR models for predicting AXL Kinase inhibitory activity of N-[4-(Quinolin-4-yloxy)phenyl]benzenesulfonamides. A CoMFA model with three components was developed and CoMFA contour maps were interpreted to extract chemical features that influence the inhibitory activity of these molecules. <i>R</i><sup>2</sup> for train and test set of CoMFA model were 0.8900 and 0.8171, respectively. Model created by five Dragon descriptors and LSSVM model showed slightly better predictive power with respect to CoMFA model. <i>R</i><sup>2</sup> for train, test set of created LSSVM model were 0.0.8477 and 0.8218, respectively. Also, a FFANN model, using the same five descriptors, was developed with 2 neurons in its hidden layer and <i>R</i><sup>2</sup> for its train and test sets were 0.8314 and 0.8522, respectively. All created models were validated by calculating several statistical parameters and their applicability domain were investigated by calculating leverage. Furthermore, a homology model was built for Axl structure and molecules with the lowest and the greatest activity were docked to it and their interactions with Axl were investigated.
DOI: 10.6084/m9.figshare.9885902.v1
title: The properties of mid-troposphere CO2 concentrations and global surface air temperature multilayer network

description: the properties of mid-tropospheric CO<sub>2</sub> data and ground-level surface air temperature network based on real data sets and shuffled networks based on shuffled data sets.
DOI: 10.6084/m9.figshare.9885578
title: Database

description: The database was originated from the experiment conducted in the poultry sector of the department of animal husbandry (DZO) of the Universidade Federal dos Vales dos Jequitinhonha e Mucuri (UFVJM) in Diamantina-MG from February 21 to May 16, 2011, filed with the Ethics Commission for Animal Use. A total of 840 male chicks were collected from seven broiler type genotypes of the redbro lineage: Caboclo (CBC), Carijó (CG), Colorpak (CPK), Gigante Negro (GNG), Pesadão Vermelho (PS), Pescoço Pelado or Naked Neck (PP) and Tricolor (TRC). The experimental design was completely randomized, with 4 replicates per genotype. Each experimental box had 2.00 x 2.00m, with 30 birds per box, in masonry shed, covered by asbestos cement tiles. The breeding system was semi-intensive, and from the 28 days of age, the birds had access to a 30m² picket, formed by Tifton-type forage, Cynodon. At 91 days of age, two animals were randomly withdrawn from each box and sent to slaughter in the slaughter room of the DZO / UFVJM. After slaughter, and all evisceration process, the carcasses were weighed still warm and abdominal fat removed.<br>It was measured in %, yields of Carcass, Breast, Drumstick, Thigh, Wing, Back, total viscera, liver, heart, liver, gizzard, and abdominal fat.<br>It was also measured the pH, color (L *, a *, b *), texture (TX), moisture (UM), water holding capacity (WHC) and cooking loss(CL) in the science and technology sector of animal products of DZO. The analyzes of protein (PTN%), lipids (EE%) and ash (CZ%) were carried out in the animal nutrition laboratory of the Universidade Federal Fluminense.<br>
DOI: 10.6084/m9.figshare.9885902.v2
title: The properties of mid-troposphere CO2 concentrations and global surface air temperature multilayer networkSupporting Information

description: The properties of mid-tropospheric CO<sub>2</sub> data and temperature multilayer network.
DOI: 10.6084/m9.figshare.9885902
title: The properties of mid-troposphere CO2 concentrations and global surface air temperature multilayer networkSupporting Information

description: The properties of mid-tropospheric CO<sub>2</sub> data and temperature multilayer network.
DOI: 10.6084/m9.figshare.9885401
title: Neuronal subset-specific Pten-deficient mice do not exhibit deficits in sensorimotor gating processes

description: The data set includes the raw data for days 1, 2, and 3 for prepulse inhibition.<br>
DOI: 10.6084/m9.figshare.9885557.v1
title: Akta traces of Size exclusion chromatography purification step for Rru_A0973 and Rru_A0974/A0973 proteins

description: Normalised Akta traces of Size exclusion chromatography purification step for Rru_A0973 (wild-type and E31A, E34A, W38A variants) and Rru_A0974/A0973 (wild-type and E31A, E34A, W38G variants) proteins.
DOI: 10.6084/m9.figshare.9885401.v2
title: Neuronal subset-specific Pten-deficient mice do not exhibit deficits in sensorimotor gating processes

description: The data set includes the raw data for days 1, 2, and 3 for prepulse inhibition.<br>
DOI: 10.6084/m9.figshare.9885359
title: data plos one.xlsx

description: Raw data of subjects included in the study
DOI: 10.6084/m9.figshare.9885401.v1
title: Neuronal subset-specific Pten-deficient mice do not exhibit deficits in sensorimotor gating processes

description: The data set includes the raw data for days 1, 2, and 3 for prepulse inhibition.<br>
DOI: 10.6084/m9.figshare.9885341
title: Metadata record for: Global humid tropics forest structural condition and forest structural integrity maps

description: This dataset contains key characteristics about the data described in the Data Descriptor Global humid tropics forest structural condition and forest structural integrity maps. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9885359.v1
title: data plos one.xlsx

description: Raw data of subjects included in the study
DOI: 10.6084/m9.figshare.9885293
title: Barelli et al_2019_PLOS ONE_data

description: Parasite species richness and diversity for Udzungwa red colobus<br>
DOI: 10.6084/m9.figshare.9885341.v2
title: Metadata record for: Global humid tropics forest structural condition and forest structural integrity maps

description: This dataset contains key characteristics about the data described in the Data Descriptor Global humid tropics forest structural condition and forest structural integrity maps. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9885293.v1
title: Barelli et al_2019_PLOS ONE_data

description: Parasite species richness and diversity for Udzungwa red colobus<br>
DOI: 10.6084/m9.figshare.9885341.v1
title: Metadata record for: Global humid tropics forest structural condition and forest structural integrity maps

description: This dataset contains key characteristics about the data described in the Data Descriptor Global humid tropics forest structural condition and forest structural integrity maps. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.9885176
title: Phylomitogenomics provides new perspectives on the triggers of Euphasmatodea radiation (Insecta: Phasmatodea).

description: Dataset used to carry out phylomitogenetic analyses<br>
DOI: 10.6084/m9.figshare.9885134
title: All compounds detected in the metabolomics analysis from Brightly coloured tissues in limid bivalves chemically deter predators

description: A table showing all compounds detected in the metabolomics analysis, including their annotations (if available) and t-test p-values indicating if a compound concentration is significantly higher in pre-defined noxious tissues.
DOI: 10.6084/m9.figshare.9885134.v1
title: All compounds detected in the metabolomics analysis from Brightly coloured tissues in limid bivalves chemically deter predators

description: A table showing all compounds detected in the metabolomics analysis, including their annotations (if available) and t-test p-values indicating if a compound concentration is significantly higher in pre-defined noxious tissues.
DOI: 10.6084/m9.figshare.9885176.v1
title: Phylomitogenomics provides new perspectives on the triggers of Euphasmatodea radiation (Insecta: Phasmatodea).

description: Dataset used to carry out phylomitogenetic analyses<br>
DOI: 10.6084/m9.figshare.9885128.v1
title: Datasets for "Spatial distribution of aerosol microphysical and optical properties and direct radiative effect from the China Aerosol Remote Sensing Network"

description: Datasets from Figures 1 to 9
DOI: 10.6084/m9.figshare.9885176.v3
title: Phylomitogenomics provides new perspectives on the triggers of Euphasmatodea radiation (Insecta: Phasmatodea).

description: Dataset used to carry out phylomitogenetic analyses<br>
DOI: 10.6084/m9.figshare.9885092
title: ESM_Nilton_et_al_2019 from Effects of structural damping on acoustic scattering by flexible plates

description: Results of Acoustic sound power presented in the manuscript.
DOI: 10.6084/m9.figshare.9885095
title: CODES from Effects of structural damping on acoustic scattering by flexible plates

description: Matlab codes for numerical methods
DOI: 10.6084/m9.figshare.9885176.v2
title: Phylomitogenomics provides new perspectives on the triggers of Euphasmatodea radiation (Insecta: Phasmatodea).

description: Dataset used to carry out phylomitogenetic analyses<br>
DOI: 10.6084/m9.figshare.9885086
title: Table S4 from Complementarity, completeness and quality of long-term faunal archives in an Asian biodiversity hotspot

description: Data for mainland Chinese mammals present and absent in Holocene sites.
DOI: 10.6084/m9.figshare.9885092.v1
title: ESM_Nilton_et_al_2019 from Effects of structural damping on acoustic scattering by flexible plates

description: Results of Acoustic sound power presented in the manuscript.
DOI: 10.6084/m9.figshare.9885080
title: Table S1 from Complementarity, completeness and quality of long-term faunal archives in an Asian biodiversity hotspot

description: Mammal species recorded in different environmental archives for Hainan, compared with species known from Hainan's current-day fauna.
DOI: 10.6084/m9.figshare.9885071
title: Figures and Tables from Bias, incompleteness and the ‘known unknowns’ in the Holocene faunal record

description: Long-term faunal data are needed to track biodiversity change and extinction over wide spatio-temporal scales. The Holocene record is a particularly rich and well-resolved resource for this purpose but nonetheless represents a biased subset of the original faunal composition, both at the site-level assemblage and when data are pooled for wider-scale analysis. We investigated patterns and potential sources of taxonomic, spatial and temporal bias in two Holocene datasets of mammalian occurrence and abundance, one at the global species level and one at the continental population-level. Larger-bodied species are disproportionately abundant in the Holocene fossil record, but this varies according to trophic level, probably due to past patterns of human subsistence and exploitation. Despite the uneven spatial distribution of mammalian occurrence records, we found no specific source of sampling bias, suggesting that this error type can be avoided by intensive data collection protocols. Faunal assemblages are more abundant and precisely dated nearer to the present as a consequence of taphonomy, past human demography and dating methods. Our study represents one of the first attempts to quantify incompleteness and bias in the Holocene mammal record and failing to critically assess the quality of long-term faunal datasets has major implications for understanding species decline and extinction risk.This article is part of the discussion meeting issue ‘The past is a foreign country: how much can the fossil record actually inform conservation?’.
DOI: 10.6084/m9.figshare.9885077
title: Table S3 from Complementarity, completeness and quality of long-term faunal archives in an Asian biodiversity hotspot

description: Mammal "types" recorded in Hainan's historical gazetteer record.
DOI: 10.6084/m9.figshare.9885080.v1
title: Table S1 from Complementarity, completeness and quality of long-term faunal archives in an Asian biodiversity hotspot

description: Mammal species recorded in different environmental archives for Hainan, compared with species known from Hainan's current-day fauna.
DOI: 10.6084/m9.figshare.9885086.v1
title: Table S4 from Complementarity, completeness and quality of long-term faunal archives in an Asian biodiversity hotspot

description: Data for mainland Chinese mammals present and absent in Holocene sites.
DOI: 10.6084/m9.figshare.9885071.v1
title: Figures and Tables from Bias, incompleteness and the ‘known unknowns’ in the Holocene faunal record

description: Long-term faunal data are needed to track biodiversity change and extinction over wide spatio-temporal scales. The Holocene record is a particularly rich and well-resolved resource for this purpose but nonetheless represents a biased subset of the original faunal composition, both at the site-level assemblage and when data are pooled for wider-scale analysis. We investigated patterns and potential sources of taxonomic, spatial and temporal bias in two Holocene datasets of mammalian occurrence and abundance, one at the global species level and one at the continental population-level. Larger-bodied species are disproportionately abundant in the Holocene fossil record, but this varies according to trophic level, probably due to past patterns of human subsistence and exploitation. Despite the uneven spatial distribution of mammalian occurrence records, we found no specific source of sampling bias, suggesting that this error type can be avoided by intensive data collection protocols. Faunal assemblages are more abundant and precisely dated nearer to the present as a consequence of taphonomy, past human demography and dating methods. Our study represents one of the first attempts to quantify incompleteness and bias in the Holocene mammal record and failing to critically assess the quality of long-term faunal datasets has major implications for understanding species decline and extinction risk.This article is part of the discussion meeting issue ‘The past is a foreign country: how much can the fossil record actually inform conservation?’.
DOI: 10.6084/m9.figshare.9885017
title: Survey results from Addressing priority questions of conservation science with palaeontological data

description: Responses of 71 participants to the 100 priority questions in conservation
DOI: 10.6084/m9.figshare.9885026
title: Data Supplement from Differing climatic mechanisms control transient and accumulated vegetation novelty in Europe and eastern North America

description: Data associated with our mixed-effects modelling framework and pollen count data.
DOI: 10.6084/m9.figshare.9885017.v1
title: Survey results from Addressing priority questions of conservation science with palaeontological data

description: Responses of 71 participants to the 100 priority questions in conservation
DOI: 10.6084/m9.figshare.9885026.v1
title: Data Supplement from Differing climatic mechanisms control transient and accumulated vegetation novelty in Europe and eastern North America

description: Data associated with our mixed-effects modelling framework and pollen count data.
DOI: 10.6084/m9.figshare.9884984
title: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms

description: Supplementary figures for MS ID#: JEXBIO/2019/211623<br>MS TITLE: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms. This dataset contains RNAseq Deseq2, and GOseq analysis of differential gene expression in NGS libraries obtained from 4 distinct regions of Malpighian tubule of the larval <i>Trichoplusia ni</i>. All the data are summarized and presented in the manuscript.
DOI: 10.6084/m9.figshare.9884984.v2
title: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms

description: Supplementary figures for MS ID#: JEXBIO/2019/211623<br>MS TITLE: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms. This dataset contains RNAseq Deseq2, and GOseq analysis of differential gene expression in NGS libraries obtained from 4 distinct regions of Malpighian tubule of the larval <i>Trichoplusia ni</i>. All the data are summarized and presented in the manuscript.
DOI: 10.6084/m9.figshare.9884984.v1
title: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms

description: Supplementary figures for MS ID#: JEXBIO/2019/211623<br>MS TITLE: Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms. This dataset contains RNAseq Deseq2, and GOseq analysis of differential gene expression in NGS libraries obtained from 4 distinct regions of Malpighian tubule of the larval <i>Trichoplusia ni</i>. All the data are summarized and presented in the manuscript.
DOI: 10.25810/jck1-hf50.28
title: United States Newspaper Coverage of Climate Change or Global Warming, 2000-2020 - July 2020 

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.9884675
title: Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1)

description: The duck represents an important reservoir of influenza viruses for transmission to other avian and mammalian hosts, including humans. The increased pathogenicity of the recently emerging clades of highly pathogenic avian influenza (HPAI) viruses of the H5N1 subtype in ducks features systemic viral spread and organ-to-organ variation in viral transcription and tissue damage. We previously reported that experimental infection of Sudani ducks (<i>Cairina moschata</i>) with an Egyptian HPAI (H5N1) virus (clade 2.2.1.2) features high viral replication and severe tissue damage in lung, but lower viral replication and only mild histological changes in brain. Little is known about the involvement of miRNA in organ-specific responses to H5N1 viruses in ducks, and involvement of the other classes of small noncoding RNA (sncRNA) has not been investigated so far. Following RNA sequencing, we have annotated the duck sncRNome and compared global expression changes of the four major sncRNA classes (miRNAs, piRNAs, snoRNAs, snRNAs) between duck lung and brain during a 120 h time course of infection with this HPAI strain. We find major organ-specific differences in miRNA, piRNA and snoRNA populations even before infection and substantial reprogramming of all sncRNA classes throughout infection, which was less pronounced in brain. Pathway prediction analysis of miRNA targets revealed enrichment of inflammation-, infection- and apoptosis-related pathways in lung, but enrichment of metabolism-related pathways (including tryptophan metabolism) in brain. Thus, organ-specific differences in sncRNA responses may contribute to differences in viral replication and organ damage in ducks infected with isolates from this emerging HPAI clade, and likely other strains.
DOI: 10.6084/m9.figshare.9884675.v1
title: Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1)

description: The duck represents an important reservoir of influenza viruses for transmission to other avian and mammalian hosts, including humans. The increased pathogenicity of the recently emerging clades of highly pathogenic avian influenza (HPAI) viruses of the H5N1 subtype in ducks features systemic viral spread and organ-to-organ variation in viral transcription and tissue damage. We previously reported that experimental infection of Sudani ducks (<i>Cairina moschata</i>) with an Egyptian HPAI (H5N1) virus (clade 2.2.1.2) features high viral replication and severe tissue damage in lung, but lower viral replication and only mild histological changes in brain. Little is known about the involvement of miRNA in organ-specific responses to H5N1 viruses in ducks, and involvement of the other classes of small noncoding RNA (sncRNA) has not been investigated so far. Following RNA sequencing, we have annotated the duck sncRNome and compared global expression changes of the four major sncRNA classes (miRNAs, piRNAs, snoRNAs, snRNAs) between duck lung and brain during a 120 h time course of infection with this HPAI strain. We find major organ-specific differences in miRNA, piRNA and snoRNA populations even before infection and substantial reprogramming of all sncRNA classes throughout infection, which was less pronounced in brain. Pathway prediction analysis of miRNA targets revealed enrichment of inflammation-, infection- and apoptosis-related pathways in lung, but enrichment of metabolism-related pathways (including tryptophan metabolism) in brain. Thus, organ-specific differences in sncRNA responses may contribute to differences in viral replication and organ damage in ducks infected with isolates from this emerging HPAI clade, and likely other strains.
DOI: 10.6084/m9.figshare.9884393
title: DATA of Functional analysis of KIT gene structural mutations causing porcine dominant white phenotype by using genome edited mouse models

description: Raw data of qPCR and WB in this results.
DOI: 10.6084/m9.figshare.9884393.v1
title: DATA of Functional analysis of KIT gene structural mutations causing porcine dominant white phenotype by using genome edited mouse models

description: Raw data of qPCR and WB in this results.
DOI: 10.17633/rd.brunel.9884321
title: Data supporting 'Featural and holistic processing can be separably impaired in disorders of face recognition: Evidence for two subtypes of developmental prosopagnosia'

description: This dataset provides data for 138 participants: 47 with developmental prosopagnosia (DP); 91 control participants with no recorded face recognition deficits. Participants with DP are further classified into two groups based on the output of a cluster analysis carried out on the data (see underpinning publication for details)For each participant, this dataset includes basic demographic details (age and gender), as well as scores on a battery of face processing tasks. This battery includes: -Cambridge Face Memory Test (CFMT): raw scores (/72) for upright and inverted; inversion index- Cambridge Face Perception Test (CFPT): raw and % correct scores for upright and inverted; inversion index- Famous faces test: % correctly identified from total known identities- Composite task: Accuracy (proportion correct) and reaction time (RT) for faces and dogs presented in aligned and misaligned conditions; alignment index for each stimulus type and measure- Face matching: d' and RT for faces and houses, upright and inverted; inversion index for each stimulus type and measure- Navon task: global bias index- Jane task: d' and RT for faces with spacing and featural changes, upright and inverted; inversion index for each condition and measure<br>Details of tasks, conditions, and calculation of different indices are provided in the underpinning publication. <br>