cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.beuexy
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellator xenisma (Jordan & Bollman, 1890)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 70 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038976-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3811762_d2
title: Additional file 2: File S1. of The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study

description: References of the CD4+ T cell regulatory network. File S2. Simplification of the CD4+ T cell regulatory network. (XLS 40Â kb)
DOI: 10.60656/ba24a7f792224ca0
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 27 Jan 2023
DOI: 10.6084/m9.figshare.c.3811762_d4.v1
title: Additional file 4: File S3. of The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study

description: Perturbation tables of the CD4+ T cell regulatory network. (XLS 243Â kb)
DOI: 10.15468/dl.b6uqx6
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Myriapoda collection from Museu Nacional de História Natural e da Ciência da Universidade de Lisboa, Portugal"
 ]
}

 The dataset includes 85 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038977-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3811798_d3.v1
title: Additional file 12: Table S12. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of the target genes for the differentially-expressed conserved miRNAs in tomato. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3811798_d3
title: Additional file 12: Table S12. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of the target genes for the differentially-expressed conserved miRNAs in tomato. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3811786_d4
title: MOESM3 of A design–build–test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models

description: Additional file 3. List of reactions, their substrates and products, together with the used kinetic mechanisms (Additional file 10).
DOI: 10.6084/m9.figshare.c.3811798_d4.v1
title: Additional file 13: Table S13. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Expression level of the target genesÂ for the differentially-expressed conserved miRNAs identified. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3811786_d5.v1
title: MOESM4 of A design–build–test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models

description: Additional file 4. Sheet “Flux Control Coefficients”: (i) Control coefficients of the xylose uptake (XTR) for a set of most important enzymes; (ii) Correlation of the distributions of the XTR control coefficients for HXK, ATPM and ZWF; (iii) The effects of manipulations of HXK, ATPM and NDR on metabolic fluxes. Sheet “Concentration Control Coeffs”: Control coefficients of the cytosolic ATP, cytosolic NADH and cytosolic NADPH during glucose-xylose co-utilization. Sheet “Turnover Control Coefficients”: (i) Turnover control coefficients of cytosolic ATP, mitochondrial ATP, cytosolic NADH, cytosolic NADPH, cytosolic protons and mitochondrial protons for HXK, ATPM and NDR; (ii) Flux control coefficients of producing and consuming reactions of cytosolic ATP, mitochondrial ATP, cytosolic NADH, cytosolic NADPH, cytosolic protons and mitochondrial protons for HXK, ATPM and NDR.
DOI: 10.6084/m9.figshare.c.3811798_d5.v1
title: Additional file 14: Table S14. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Target gene prediction results of the differentially-expressed novel miRNAs. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3811786_d5
title: MOESM4 of A design–build–test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models

description: Additional file 4. Sheet “Flux Control Coefficients”: (i) Control coefficients of the xylose uptake (XTR) for a set of most important enzymes; (ii) Correlation of the distributions of the XTR control coefficients for HXK, ATPM and ZWF; (iii) The effects of manipulations of HXK, ATPM and NDR on metabolic fluxes. Sheet “Concentration Control Coeffs”: Control coefficients of the cytosolic ATP, cytosolic NADH and cytosolic NADPH during glucose-xylose co-utilization. Sheet “Turnover Control Coefficients”: (i) Turnover control coefficients of cytosolic ATP, mitochondrial ATP, cytosolic NADH, cytosolic NADPH, cytosolic protons and mitochondrial protons for HXK, ATPM and NDR; (ii) Flux control coefficients of producing and consuming reactions of cytosolic ATP, mitochondrial ATP, cytosolic NADH, cytosolic NADPH, cytosolic protons and mitochondrial protons for HXK, ATPM and NDR.
DOI: 10.6084/m9.figshare.c.3811798_d4
title: Additional file 13: Table S13. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Expression level of the target genesÂ for the differentially-expressed conserved miRNAs identified. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3811798_d6.v1
title: Additional file 15: Table S15. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Enriched GO terms of the target genes for the differentially-expressed novel miRNAs in tomato. a, Number in input list: the number of genes mapped to the GO term of input list. b, Number in BG/Ref: the number of genes mapped to the GO term of reference list. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3811798_d5
title: Additional file 14: Table S14. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Target gene prediction results of the differentially-expressed novel miRNAs. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3811798_d6
title: Additional file 15: Table S15. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Enriched GO terms of the target genes for the differentially-expressed novel miRNAs in tomato. a, Number in input list: the number of genes mapped to the GO term of input list. b, Number in BG/Ref: the number of genes mapped to the GO term of reference list. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3811798_d7
title: Additional file 16: Table S16. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of the target genes for the differentially-expressed novel miRNAs in tomato. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3811798_d7.v1
title: Additional file 16: Table S16. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of the target genes for the differentially-expressed novel miRNAs in tomato. (XLSX 12 kb)
DOI: 10.60656/af3a47c77e6948db
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 28 Jan 2023
DOI: 10.6084/m9.figshare.c.3811798_d13
title: Additional file 4: Table S4. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: List of genes with confident expression in the drought-tolerant tomato IL9â  1. a, FPKM: fragments per kilobase of exon model per million mapped reads. (XLSX 1915 kb)
DOI: 10.6084/m9.figshare.c.3811813_d1.v1
title: Additional file 1 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: Analyzed gene set and reference gene set. This excel file includes 26 genes that compose described gene group G 1 and 135 genes from reference gene group G 2 analyzed in this study. The lists of genes were derived from Finak et al. [48]. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3811798_d15.v1
title: Additional file 6: Table S6. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly up-regulated genes in the drought-sensitive tomato M82. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3811813_d2.v1
title: Additional file 2 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: List of 57 GO terms related to hallmarks of cancer. This excel file includes a list of 57 GO terms related to the hallmarks of cancer from Knijnenburg et al. [50], which were used as a base to define the expert terms used in the analysis. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3811798_d15
title: Additional file 6: Table S6. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly up-regulated genes in the drought-sensitive tomato M82. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3811813_d2
title: Additional file 2 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: List of 57 GO terms related to hallmarks of cancer. This excel file includes a list of 57 GO terms related to the hallmarks of cancer from Knijnenburg et al. [50], which were used as a base to define the expert terms used in the analysis. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3811798_d16.v1
title: Additional file 7: Table S7. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly up-regulated genes in the drought-tolerant tomato IL9â  1. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3811798_d17.v1
title: Additional file 8: Table S8. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly down-regulated genes in the drought-sensitive tomato M82. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3811813_d1
title: Additional file 1 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: Analyzed gene set and reference gene set. This excel file includes 26 genes that compose described gene group G 1 and 135 genes from reference gene group G 2 analyzed in this study. The lists of genes were derived from Finak et al. [48]. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3811813_d3.v1
title: Additional file 3 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: Rule network sets that were generated as a result of this analysis. This excel file includes rule network sets that were generated as a result of this analysis. Each tab of the Excel file represents different rule set: set S01 represents results for the RuleGO method without filtering procedure applied, set S02 is a standard method with applied filtering, set S03 applies filtering using UTA approach, and set S04 proposes a new approach that allows the user to control the process of logical rule generation by providing a set of seed terms. For the set S04, we provide six rule sets obtained with different sets of quality assessment and filtering parameters as presented in Table 2. Each row represents a single rule, and GO terms from the expert set (seed terms) are denoted with star (*). Also for sets S02, S03, and S04 seed terms are marked with bold font. For each rule, we also provide the number of genes supported and recognized by the rule, its precision, coverage, value of the QCompound measure, p-value, and the list of genes supported by that rule. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3811798_d16
title: Additional file 7: Table S7. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly up-regulated genes in the drought-tolerant tomato IL9â  1. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3811798_d18.v1
title: Additional file 9: Table S9. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly down-regulated genes in the drought-tolerant tomato IL9â  1. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3811813_d3
title: Additional file 3 of Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

description: Rule network sets that were generated as a result of this analysis. This excel file includes rule network sets that were generated as a result of this analysis. Each tab of the Excel file represents different rule set: set S01 represents results for the RuleGO method without filtering procedure applied, set S02 is a standard method with applied filtering, set S03 applies filtering using UTA approach, and set S04 proposes a new approach that allows the user to control the process of logical rule generation by providing a set of seed terms. For the set S04, we provide six rule sets obtained with different sets of quality assessment and filtering parameters as presented in Table 2. Each row represents a single rule, and GO terms from the expert set (seed terms) are denoted with star (*). Also for sets S02, S03, and S04 seed terms are marked with bold font. For each rule, we also provide the number of genes supported and recognized by the rule, its precision, coverage, value of the QCompound measure, p-value, and the list of genes supported by that rule. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3811798_d17
title: Additional file 8: Table S8. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly down-regulated genes in the drought-sensitive tomato M82. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3811798_d18
title: Additional file 9: Table S9. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: KEGG pathways of significantly down-regulated genes in the drought-tolerant tomato IL9â  1. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3812476_d1.v1
title: Additional file 10: Table S3. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Gene set enrichment with GO Biological Processes term. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3812473_d1
title: Additional file 1: of A survey for potentially zoonotic gastrointestinal parasites in domestic cavies in Cameroon (Central Africa)

description: Values in the table are the optical densities obtained from the analysis of fecal samples for the presence of Giardia/Cryptosporidium coproantigen. Values A1 and B1 refer to positive control while value H12 refers to negative control. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3812479_d1.v1
title: Additional file 1: of Insights into the Geobacillus stearothermophilus species based on phylogenomic principles

description: Table S1. Lists the bacterial genomes used in this study. Table S2. This spreadsheet contains the ANIm values between each pair of genomes. (XLSX 48 kb)
DOI: 10.15468/dl.jwgxgt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bellottia apoda Giglioli, 1883",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038978-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3812476_d5.v1
title: Additional file 14: Table S5. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: C1orf116 module genes obtained from Weighted Gene Co-expression analysis. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3812476_d5
title: Additional file 14: Table S5. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: C1orf116 module genes obtained from Weighted Gene Co-expression analysis. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3812476_d6.v1
title: Additional file 1: Table S1. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Dataset information â   Extended table. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3812500_d1.v1
title: MOESM1 of Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs

description: Additional file 1: Table S1. Data on the 204 hairy black NIP sampled from six states in Nigeria. Information on the mtDNA, Y-chromosome and MC1R of the 204 NIP samples.
DOI: 10.6084/m9.figshare.c.3812476_d6
title: Additional file 1: Table S1. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Dataset information â   Extended table. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3812500_d1
title: MOESM1 of Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs

description: Additional file 1: Table S1. Data on the 204 hairy black NIP sampled from six states in Nigeria. Information on the mtDNA, Y-chromosome and MC1R of the 204 NIP samples.
DOI: 10.15468/dl.cbpcub
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Soldanella minima subsp. minima, Soldanella minima f. latifolia Cristof. & Pignatti, Soldanella alpina f. cyclophylla Beck, Soldanella minima f. biflora R.Schulz, Soldanella minima f. coerulea R.Schulz, Soldanella clusii Gaudin, Soldanella minima f. longistyla R.Schulz, Soldanella alpina var. rotundifolia Ser., Soldanella minima f. cyclophylla (Beck) Vierh., Soldanella minima f. cyclophylla (Beck) Lüdi, Soldanella alpina var. minima (Hoppe) Fiori)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 83 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038979-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/135ab3fe9910420e
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 29 Jan 2023
DOI: 10.6084/m9.figshare.c.3812476_d7.v1
title: Additional file 2: Table S6. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: List of antibodies used in immunoblot. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3812476_d7
title: Additional file 2: Table S6. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: List of antibodies used in immunoblot. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3812509_d1.v1
title: Additional file 1: Table S1. of Characterization of phytoconstituents and evaluation of antimicrobial activity of silver-extract nanoparticles synthesized from Momordica charantia fruit extract

description: Antibacterial efficacy of M. charantia, AgNPs and Ag-Extract-NPs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3812476_d8.v1
title: Additional file 3: Table S7. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Association of C1orf116 expression in lung and prostate cancer patients. (XLSX 9 kb)
DOI: 10.5281/zenodo.14506942
title: Can models help us build a climate-winning U.S. LNG industry?

description: xml input files.

Batch files for 9 scenarios. 

Database for 9 scenarios. 

Figure R script and csv files.
DOI: 10.5281/zenodo.14509659
title: Can models help us build a climate-winning U.S. LNG industry?

description: xml input files.

Batch files for 9 scenarios. 

Database for 9 scenarios:Run_1125.zip. 

Figure R script and csv files.
DOI: 10.5281/zenodo.14513658
title: Can models help us build a climate-winning U.S. LNG industry?

description: xml input files.

Batch files for 9 scenarios. 

Database for 9 scenarios:Run_1125.zip. 

Figure R script and csv files:Figure data CSV.
DOI: 10.5281/zenodo.14506941
title: Can models help us build a climate-winning U.S. LNG industry?

description: xml input files.

Batch files for 9 scenarios. 

Database for 9 scenarios:Run_1125.zip. 

Figure R script and csv files: CSIS_commentary_figs.R and Figure data CSV.
DOI: 10.5281/zenodo.14513662
title: Can models help us build a climate-winning U.S. LNG industry?

description: xml input files.

Batch files for 9 scenarios. 

Database for 9 scenarios:Run_1125.zip. 

Figure R script and csv files: CSIS_commentary_figs.R and Figure data CSV.
DOI: 10.6084/m9.figshare.c.3812551_d1.v1
title: Additional file 1: of Long-term maintenance of diphtheria-specific antibodies after booster vaccination is hampered by latent infection with Cytomegalovirus

description: Data table. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3812551_d1
title: Additional file 1: of Long-term maintenance of diphtheria-specific antibodies after booster vaccination is hampered by latent infection with Cytomegalovirus

description: Data table. (XLSX 23 kb)
DOI: 10.15468/dl.33zdpn
title: Occurrence Download

description: A dataset containing 22812888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipitridae, Falconidae, Strigidae, Tytonidae, Pandionidae)",
 "HasCoordinate is true",
 "Country is one of (Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Cyprus, Czechia, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Sweden, Switzerland, Türkiye, Ukraine, United Kingdom of Great Britain and Northern Ireland, Holy See)",
 "Year is greater than or equal to 2016",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)"
 ]
}

 The dataset includes 22812888 records from 6691 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004791-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.