cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7649054.v1
title: Supplementary Material for: Postoperative Acute Kidney Injury: Focus on Renal Recovery Definitions, Kidney Disease Progression and Survival

description: <b><i>Background:</i></b> The aim of this study was to examine different definitions of renal recovery following postoperative acute kidney injury (AKI) and how these definitions associate with survival and the development and progression of chronic kidney disease (CKD). <b><i>Methods:</i></b> This was a retrospective study of all patients who underwent abdominal, cardiothoracic, vascular, or orthopedic surgery at a single university hospital between 1998 and 2015. Recovery of renal function following postoperative AKI was assessed comparing 4 different definitions: serum creatinine (SCr) (i) &lt; 1.1 × baseline, (ii) 1.1–1.25 × baseline, (iii) 1.25–1.5 × baseline, and (iv) &gt; 1.5 × baseline. One-year survival and the development or progression of CKD within 5 years was compared with a propensity score-matched control groups. <b><i>Results:</i></b> In total, 2,520 AKI patients were evaluated for renal recovery. Risk of incident and progressive CKD within 5 years was significantly increased if patients did not achieve a reduction in SCr to p &lt; 0.001). <b><i>Conclusions:</i></b> These findings should be considered when a consensus definition of renal recovery after AKI is established.
DOI: 10.5517/ccdc.csd.cc25l21x
title: CCDC 2013358: Experimental Crystal Structure Determination

description: Related Article: Ahmed M. H. Abudken, Eric G. Hope, Kuldip Singh, Alison M. Stuart|2020|Org.Biomol.Chem.|18|6140|doi:10.1039/D0OB01401J
DOI: 10.6084/m9.figshare.7649048.v1
title: Supplementary Material for: A Placebo-Controlled, Randomized Trial of Enarodustat in Patients with Chronic Kidney Disease Followed by Long-Term Trial

description: <b><i>Background:</i></b> Enarodustat (JTZ-951) is an oral hypoxia-inducible factor prolyl hydroxylase inhibitor that mimics adaptive responses to hypoxic conditions and may provide a new therapeutic approach for managing anemia in patients with chronic kidney disease (CKD). We evaluated the efficacy, safety, and maintenance dose of enarodustat in anemic patients with CKD not on dialysis. <b><i>Methods:</i></b> Erythropoiesis-stimulating agent (ESA) naïve patients (correction group) and patients on a stable dose of ESA (conversion group) were randomized to receive 2, 4, or 6 mg of enarodustat or placebo once daily for 6 weeks in a double-blind manner (Period 1) followed by 24 weeks of open enarodustat treatment to maintain their hemoglobin (Hb) levels within a target range of 10.0–12.0 g/dL in reference to a dose adjustment algorithm (Period 2). <b><i>Results:</i></b> In the correction group, Hb level increase rate per week increased in a dose-response manner. The proportion of subjects in the conversion group who maintained Hb levels within ± 1.0 g/dL of baseline did not differ between each enarodustat arm and placebo arm during Period 1. Over 70% of subjects in both groups maintained Hb levels within the target range at the end of treatment in Period 2. The mean prescribed doses were 3.58 and 3.74 mg/day in the correction group and the conversion group, respectively. Enarodustat was associated with decreases in hepcidin and ferritin and increased total iron-binding capacity and was generally well tolerated. <b><i>Conclusions:</i></b> Enarodustat corrects and maintains Hb levels in anemic patients with CKD not on dialysis.
DOI: 10.6084/m9.figshare.7649036
title: Supplementary Material for: In-Hospital Outcomes after Radical Cystectomy for Bladder Cancer: Comparing National Trends in the United States and Germany from 2006 to 2014

description: <b><i>Background:</i></b> Radical cystectomy (RC) still poses a significant risk for mortality and morbidity. <b><i>Objectives:</i></b> We compared in-hospital outcomes after RC in the United States and ­Germany using population-based data. <b><i>Methods:</i></b> We compared data from the US Nationwide Inpatient Sample to the German hospital billing database. Mortality and transfusion during hospital stay and length of stay (LOS) were evaluated. <b><i>Results:</i></b> In all, 17,711 (the United States) and 60,447 (­Germany) cases were included. The share of robot-assisted RC increased to 20.5% in the United States vs. 2.3% in Germany (<i>p</i> &lt; 0.001). In-hospital mortality was 1.9% (the United States) vs. 4.6% (Germany), transfusion rates were 34.2% (the United States) vs. 58.7% (Germany), and LOS was 10.7 (the United States) vs. 25.1 days (Germany; all <i>p</i> &lt; 0.001). On multivariate analysis, higher patient age and lower annual hospital caseload were associated with increased mortality and longer LOS. Minimal-invasive surgery was associated with less blood transfusion and shorter LOS in the United States vs. hospital caseload and choice of urinary diversion in Germany. <b><i>Conclusions:</i></b> Healthcare systems might exert a relevant impact on outcomes of oncologic surgery. Increased in-hospital mortality rates in Germany seem to be partly explained by much longer LOS compared to those in the United States. Annual caseload seems to be influential on in-hospital outcomes raising the question of centralization of RC.
DOI: 10.5517/ccdc.csd.cc25l22y
title: CCDC 2013359: Experimental Crystal Structure Determination

description: Related Article: Ahmed M. H. Abudken, Eric G. Hope, Kuldip Singh, Alison M. Stuart|2020|Org.Biomol.Chem.|18|6140|doi:10.1039/D0OB01401J
DOI: 10.6084/m9.figshare.7649024
title: FACIALRECFROMDNA

description: Supplementary illustrations, data and code for: Facial recognition from DNA using Face-to-DNA-classifiers
DOI: 10.6084/m9.figshare.7649036.v1
title: Supplementary Material for: In-Hospital Outcomes after Radical Cystectomy for Bladder Cancer: Comparing National Trends in the United States and Germany from 2006 to 2014

description: <b><i>Background:</i></b> Radical cystectomy (RC) still poses a significant risk for mortality and morbidity. <b><i>Objectives:</i></b> We compared in-hospital outcomes after RC in the United States and ­Germany using population-based data. <b><i>Methods:</i></b> We compared data from the US Nationwide Inpatient Sample to the German hospital billing database. Mortality and transfusion during hospital stay and length of stay (LOS) were evaluated. <b><i>Results:</i></b> In all, 17,711 (the United States) and 60,447 (­Germany) cases were included. The share of robot-assisted RC increased to 20.5% in the United States vs. 2.3% in Germany (<i>p</i> &lt; 0.001). In-hospital mortality was 1.9% (the United States) vs. 4.6% (Germany), transfusion rates were 34.2% (the United States) vs. 58.7% (Germany), and LOS was 10.7 (the United States) vs. 25.1 days (Germany; all <i>p</i> &lt; 0.001). On multivariate analysis, higher patient age and lower annual hospital caseload were associated with increased mortality and longer LOS. Minimal-invasive surgery was associated with less blood transfusion and shorter LOS in the United States vs. hospital caseload and choice of urinary diversion in Germany. <b><i>Conclusions:</i></b> Healthcare systems might exert a relevant impact on outcomes of oncologic surgery. Increased in-hospital mortality rates in Germany seem to be partly explained by much longer LOS compared to those in the United States. Annual caseload seems to be influential on in-hospital outcomes raising the question of centralization of RC.
DOI: 10.6084/m9.figshare.7649051.v1
title: Hybrid Enterobacteriaceae assemblies using PacBio+Illumina or ONT+Illumina sequencing

description: Data associated with: De Maio, Shaw, et al. on behalf of the REHAB consortium (2019), Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. biorxiv 530824 <br>Illumina sequencing allows rapid, cheap and accurate whole genome bacterial analyses, but short reads (&lt;300 bp) do not usually enable complete genome assembly. Long read sequencing greatly assists with resolving complex bacterial genomes, particularly when combined with short-read Illumina data (hybrid assembly). However, it is not clear how different long-read sequencing methods impact on assembly accuracy. <br>In this study, we compared hybrid assemblies for 20 bacterial isolates, including two reference strains, using Illumina sequencing and long reads from either Oxford Nanopore Technologies (ONT) or from SMRT Pacific Biosciences (PacBio) sequencing platforms.<br><br>This set of files includes all hybrid assemblies produced using Unicycler with different sequencing approaches and strategies. Each isolate has 8 assemblies = 4 x ONT-Illumina + 4 x PacBio-Illumina. There are a total of 158 assemblies as two assemblies did not finish (8x20 - 2 = 160 - 2 = 158).<br><br>Assemblies were produced from different long read preparation strategies:• <b>Basic</b>: no filtering or correction of reads (i.e. all long reads available used for assembly).<br>• <b>Corrected</b>: Long reads were error-corrected and subsampled (preferentially selecting longest reads) to 30-40x coverage using Canu (v1.5, https://github.com/marbl/canu) with default options.<br>• <b>Filtered</b>: long reads were filtered using Filtlong (v0.1.1, https://github.com/rrwick/Filtlong) by using Illumina reads as an external reference for read quality and either removing 10% of the worst reads or by retaining 500Mbp in total, whichever resulted in fewer reads. We also removed reads shorter than 1kb and used the --trim and --split 250 options.<br>• <b> Subsampled</b>: we randomly subsampled long reads to leave approximately 600Mbp (corresponding to a long read coverage around 100x).<br>Assembly file names have the following format:<br>${sample-name}_${preparation-strategy}_${long-read-sequencing}.fastae.g. for sample CFT073 the filtered PacBio-Illumina assembly is: CFT073_filtered_pacbio.fasta<br><br>See the associated preprint for more details: https://doi.org/10.1101/530824
DOI: 10.7284/108620
title: Speedlog data collected during research cruise EN474 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25l23z
title: CCDC 2013360: Experimental Crystal Structure Determination

description: Related Article: Ahmed M. H. Abudken, Eric G. Hope, Kuldip Singh, Alison M. Stuart|2020|Org.Biomol.Chem.|18|6140|doi:10.1039/D0OB01401J
DOI: 10.6084/m9.figshare.7648973
title: ORCID Flyer

description: ORCID Flyer created in Indesign
DOI: 10.7284/107252
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN475 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107312
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN475 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25gp6k
title: CCDC 2010108: Experimental Crystal Structure Determination

description: Related Article: Mingxu Cui,  Wei Bai,  Herman H. Y. Sung,  Ian D. Williams,  Guochen Jia|2020|J.Am.Chem.Soc.|142|13339|doi:10.1021/jacs.0c06581
DOI: 10.7284/108628
title: Fluorometer data collected during research cruise EN475 using a Turner 10-AU instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7648973.v3
title: ORCID Flyer

description: ORCID Flyer created in Indesign
DOI: 10.7284/103240
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN475 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25sjgz
title: CCDC 2019571: Experimental Crystal Structure Determination

description: Related Article: Chune Dong, Enshan Zhou, Xin Han, Yuanyuan Li, Chao Guo|2015|Heterocycles|91|1628|doi:10.3987/COM-15-13231
DOI: 10.6084/m9.figshare.7648973.v2
title: ORCID Flyer

description: ORCID Flyer created in Indesign
DOI: 10.5517/ccdc.csd.cc25sjm4
title: CCDC 2019576: Experimental Crystal Structure Determination

description: Related Article: Yusuke Kita, Shoji Hida, Kenya Higashihara, Himanshu Sekhar Jena, Kosuke Higashida, Kazushi Mashima|2016|Angew.Chem.,Int.Ed.|55|8299|doi:10.1002/anie.201601748
DOI: 10.5517/ccdc.csd.cc25sktc
title: CCDC 2019613: Experimental Crystal Structure Determination

description: Related Article: Stephanie A. Murray, Jacob C. Green, Sanita B. Tailor, Simon J. Meek|2016|Angew.Chem.,Int.Ed.|55|9065|doi:10.1002/anie.201603465
DOI: 10.6084/m9.figshare.7648925
title: Pengantar Pengajaran Bahasa Indonesia di Perguruan Tinggi

description: This video describe about the Introduction to Bahasa Indonesia for College students. The topic covers, the objective of learning Bahasa Indonesia, the history of Bahasa Indonesia, and the functions of Bahasa Indonesia. The video is delivered by lecturers of MKWU Bahasa Indonesia Universitas Andalas: Dr. Gusdi Sastra, M.Hum, Sonezza Ladyana, S.S, M.Hum, Armini Arbain, M.Hum, and Ronidin, S.S, M.Hum.
DOI: 10.7284/107309
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN475 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25sltd
title: CCDC 2019644: Experimental Crystal Structure Determination

description: Related Article: Giulio Bertuzzi, Simone Crotti, Pierpaolo Calandro, Bianca Flavia Bonini, Ilaria Monaco, Erica Locatelli, Mariafrancesca Fochi, Paolo Zani, Elena Strocchi, Andrea Mazzanti, Mario Chiariello, Mauro Comes Franchini|2018|ChemMedChem|13|1744|doi:10.1002/cmdc.201800251
DOI: 10.6084/m9.figshare.7648874
title: Supplementary Material for: Real-Time Functional Connectivity-Informed Neurofeedback of Amygdala-Frontal Pathways Reduces Anxiety

description: <b><i>Background:</i></b> Deficient emotion regulation and exaggerated anxiety represent a major transdiagnostic psychopathological marker. On the neural level these deficits have been closely linked to impaired, yet treatment-sensitive, prefrontal regulatory control over the amygdala. Gaining direct control over these pathways could therefore provide an innovative and promising intervention to regulate exaggerated anxiety. To this end the current proof-of-concept study evaluated the feasibility, functional relevance and maintenance of a novel connectivity-informed real-time fMRI neurofeedback training. <b><i>Methods:</i></b> In a randomized crossover sham-controlled design, 26 healthy subjects with high anxiety underwent real-time fMRI-guided neurofeedback training to enhance connectivity between the ventrolateral prefrontal cortex (vlPFC) and the amygdala (target pathway) during threat exposure. Maintenance of regulatory control was assessed after 3 days and in the absence of feedback. Training-induced changes in functional connectivity of the target pathway and anxiety ratings served as primary outcomes. <b><i>Results:</i></b> Training of the target, yet not the sham control, pathway significantly increased amygdala-vlPFC connectivity and decreased levels of anxiety. Stronger connectivity increases were significantly associated with higher anxiety reduction on the group level. At the follow-up, volitional control over the target pathway was maintained in the absence of feedback. <b><i>Conclusions:</i></b> The present results demonstrate for the first time that successful self-regulation of amygdala-prefrontal top-down regulatory circuits may represent a novel intervention to control anxiety. As such, the present findings underscore both the critical contribution of amygdala-prefrontal circuits to emotion regulation and the therapeutic potential of connectivity-informed real-time neurofeedback.
DOI: 10.7284/111983
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN475 using a Trimble NT-300D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25sp8y
title: CCDC 2019720: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Akutagawa, Asako Hashimoto, Sadafumi Nishihara, Tatsuo Hasegawa, Takayoshi Nakamura|2003|J.Phys.Chem.B|107|66|doi:10.1021/jp026497b
DOI: 10.6084/m9.figshare.7648922.v1
title: data

description: High-throughput sequencing of microorganisms
DOI: 10.5517/ccdc.csd.cc25spb0
title: CCDC 2019722: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Akutagawa, Asako Hashimoto, Sadafumi Nishihara, Tatsuo Hasegawa, Takayoshi Nakamura|2003|J.Phys.Chem.B|107|66|doi:10.1021/jp026497b
DOI: 10.6084/m9.figshare.7648862
title: Supplementary Material for: The Euthymia Scale: A Clinimetric Analysis

description: Medicine
DOI: 10.5517/ccdc.csd.cc25spc1
title: CCDC 2019723: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Akutagawa, Asako Hashimoto, Sadafumi Nishihara, Tatsuo Hasegawa, Takayoshi Nakamura|2003|J.Phys.Chem.B|107|66|doi:10.1021/jp026497b
DOI: 10.7284/108623
title: Gyrocompass data collected during research cruise EN475 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25spf3
title: CCDC 2019725: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Akutagawa, Asako Hashimoto, Sadafumi Nishihara, Tatsuo Hasegawa, Takayoshi Nakamura|2003|J.Phys.Chem.B|107|66|doi:10.1021/jp026497b
DOI: 10.6084/m9.figshare.7648853
title: A new caimanine (Crocodylia, Alligatoroidea) species from the Solimões Formation of Brazil and the phylogeny of Caimaninae

description: The Miocene deposits of South America are notable for their diverse crocodyliform fauna, of which the giant caimanine <i>Purussaurus</i> is a well-known example. This contribution describes a new caimanine, <i>Acresuchus pachytemporalis</i>, gen. et sp. nov., based on an almost complete skull and mandible from the late Miocene Solimões Formation of the southwestern Brazilian Amazonia. This new taxon is based on a unique combination of characters, of which the presence of an upturned posterolateral margin of the squamosal throughout the entire lateral margin of the bone (a ‘horn’), with a dorsoventral expansion in the posterior portion of the eminence, stands out. We conducted a phylogenetic analysis of Eusuchia, which showed the new taxon as sister to <i>Purussaurus</i>. This placement allows discussion about the evolution of gigantism in the <i>Acresuchus</i>-<i>Purussaurus</i> clade, which reveals several characters that may be related to gigantism. Additionally, <i>Acresuchus</i> was probably a medium-sized generalist caimanine that had an ecological niche similar to the extant <i>Melanosuchus niger</i>. Until now, crocodyliforms that had such niches were unknown from the Solimões Formation.
DOI: 10.6084/m9.figshare.7648862.v1
title: Supplementary Material for: The Euthymia Scale: A Clinimetric Analysis

description: Medicine
DOI: 10.5517/ccdc.csd.cc25sq4v
title: CCDC 2019747: Experimental Crystal Structure Determination

description: Related Article: Hanshen Xin, Jing Li, Ru-Qiang Lu, Xike Gao, Timothy M. Swager|2020|J.Am.Chem.Soc.|142|13598|doi:10.1021/jacs.0c06299
DOI: 10.6084/m9.figshare.7648853.v1
title: A new caimanine (Crocodylia, Alligatoroidea) species from the Solimões Formation of Brazil and the phylogeny of Caimaninae

description: The Miocene deposits of South America are notable for their diverse crocodyliform fauna, of which the giant caimanine <i>Purussaurus</i> is a well-known example. This contribution describes a new caimanine, <i>Acresuchus pachytemporalis</i>, gen. et sp. nov., based on an almost complete skull and mandible from the late Miocene Solimões Formation of the southwestern Brazilian Amazonia. This new taxon is based on a unique combination of characters, of which the presence of an upturned posterolateral margin of the squamosal throughout the entire lateral margin of the bone (a ‘horn’), with a dorsoventral expansion in the posterior portion of the eminence, stands out. We conducted a phylogenetic analysis of Eusuchia, which showed the new taxon as sister to <i>Purussaurus</i>. This placement allows discussion about the evolution of gigantism in the <i>Acresuchus</i>-<i>Purussaurus</i> clade, which reveals several characters that may be related to gigantism. Additionally, <i>Acresuchus</i> was probably a medium-sized generalist caimanine that had an ecological niche similar to the extant <i>Melanosuchus niger</i>. Until now, crocodyliforms that had such niches were unknown from the Solimões Formation.
DOI: 10.7284/108624
title: Gyrocompass data collected during research cruise EN475 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25sq5w
title: CCDC 2019748: Experimental Crystal Structure Determination

description: Related Article: Chi He, Hang Chu, Thomas P. Stratton, David Kossler, Kelly J. Eberle, Dillon T. Flood, Phil S. Baran|2020|J.Am.Chem.Soc.|142|13683|doi:10.1021/jacs.0c06641
DOI: 10.5517/ccdc.csd.cc25sq6x
title: CCDC 2019749: Experimental Crystal Structure Determination

description: Related Article: Chi He, Hang Chu, Thomas P. Stratton, David Kossler, Kelly J. Eberle, Dillon T. Flood, Phil S. Baran|2020|J.Am.Chem.Soc.|142|13683|doi:10.1021/jacs.0c06641
DOI: 10.7284/107311
title: Singlebeam Echosounder data collected during research cruise EN475 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25sq7y
title: CCDC 2019750: Experimental Crystal Structure Determination

description: Related Article: Chi He, Hang Chu, Thomas P. Stratton, David Kossler, Kelly J. Eberle, Dillon T. Flood, Phil S. Baran|2020|J.Am.Chem.Soc.|142|13683|doi:10.1021/jacs.0c06641
DOI: 10.5517/ccdc.csd.cc25sq8z
title: CCDC 2019751: Experimental Crystal Structure Determination

description: Related Article: Chi He, Hang Chu, Thomas P. Stratton, David Kossler, Kelly J. Eberle, Dillon T. Flood, Phil S. Baran|2020|J.Am.Chem.Soc.|142|13683|doi:10.1021/jacs.0c06641
DOI: 10.6084/m9.figshare.7648802
title: ijnlc - Call for Papers

description: Natural Language Processing is a programmed approach to analyze text that is based on both a set of theories and a set of technologies. This forum aims to bring together researchers who have designed and build software that will analyze, understand, and generate languages that humans use naturally to address computers.<br>
DOI: 10.7284/108626
title: Speedlog data collected during research cruise EN475 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7648802.v1
title: ijnlc - Call for Papers

description: Natural Language Processing is a programmed approach to analyze text that is based on both a set of theories and a set of technologies. This forum aims to bring together researchers who have designed and build software that will analyze, understand, and generate languages that humans use naturally to address computers.<br>