cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3633242_d2
title: Additional file 2: of Is adjunctive naturopathy associated with improved glycaemic control and a reduction in need for medications among type 2 Diabetes patients? A prospective cohort study from India

description: Dataset. (XLS 57 kb)
DOI: 10.6084/m9.figshare.c.3633260_d1
title: Additional file 1: of gtrellis: an R/Bioconductor package for making genome-level Trellis graphics

description: Visualization of multiple transcripts for TP53, TP63 and TP73. (ZIP 79 kb)
DOI: 10.6084/m9.figshare.c.3633260_d2
title: Additional file 2: of gtrellis: an R/Bioconductor package for making genome-level Trellis graphics

description: Enhanced Manhattan plot. (ZIP 452 kb)
DOI: 10.6084/m9.figshare.c.3633260_d3
title: Additional file 3: of gtrellis: an R/Bioconductor package for making genome-level Trellis graphics

description: Data and source code for producing Figs.Â 2 and 3. (ZIP 1464 kb)
DOI: 10.6084/m9.figshare.c.3633263_d3
title: Additional file 2: Table S1. of Deletion of the type-1 interferon receptor in APPSWE/PS1ΔE9 mice preserves cognitive function and alters glial phenotype

description: Statistical table (See additional statistical table file). Statistical analysis information is displayed for all data displayed within the accompanying figures. Power values were determined post-hoc based upon population effect size, sample size and group number. An α value of 0.05 was used to set the type-1 error rate in statistical comparisons. p values are given as exact values or adjusted multiplicity variants where an ANOVA and multiple comparisons post-hoc test was applied to the data. n represents the number of individual animals or primary cell cultures derived from separate animals used in each experiment. N/A: not applicable. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3633401_d4
title: Additional file 11: Table S6. of Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland

description: List of transcripts that showed increased expression in SG-MG+ due to the presence of the parasite in the midgut. (XLS 306Â kb)
DOI: 10.6084/m9.figshare.c.3633428_d1
title: Additional file 1: Table S1. of Identification of new heading date determinants in wheat 5B chromosome

description: 5B chromosome genetic_linkage_map of CS x CS-5Bdic. The map was constructed using MultiPoint â  UltraDenseâ   software. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3633401_d6
title: Additional file 4: Table S4. of Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland

description: List of differentially expressed transcripts between SG + MG+ vs SG-MG+. (XLS 1305 kb)
DOI: 10.6084/m9.figshare.c.3633368_d12
title: Additional file 7: of Genetic toxicity assessment of engineered nanoparticles using a 3D in vitro skin model (EpiDerm™)

description: Tabulated dose-response data used in the creation of Fig. 6: Human B lymphoblastoid cells (TK6) were exposed to the 16 nm-SiO2 or 85 nm-SiO2 for 24 h in absence of cyt B via the 3D topical (3D-T), 3D in-medium (3D-M) or 2D in-medium (2D) exposure routes. Genotoxicity (micronucleus frequency) was assessed until cell viability decreased below 50 %. Equivalent 2D / 3D doses were established by total mass dose normalisation according to the total number of cells in each system at time of inoculation (see Methods). Alternative dose metrics including the 3D equivalent total mass doses with area (topical exposures) unit components are provided in Table 2. (CSV 4 kb)
DOI: 10.6084/m9.figshare.c.3633428_d2
title: Additional file 3: Table S3. of Identification of new heading date determinants in wheat 5B chromosome

description: LODs values of Interval analysis of heading date trait. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3633401_d7
title: Additional file 6: Table S5. of Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland

description: List of differentially expressed transcripts shared between experimental conditions. (XLS 838Â kb)
DOI: 10.6084/m9.figshare.c.3633431_d1
title: Additional file 3: of Assessment of primary rehabilitation needs in neurological rehabilitation: translation, adaptation and face validity of the Danish version of Rehabilitation Complexity Scale-Extended

description: Data from face validity study. The dataset has 10 variables: Variable a: Case_no refers to the case numbers; Variables b, e, h: *_problems answers to question “Did you have any problems scoring one of the 10 latest patients?”; Variables c, f, i: *_problem_ID gives the ID of the case with a problem; Variables d, g, j: * _score answers to question “On average over the last 10 patients, does the RCS-E present a sufficient description of the patient in the areas you have been asked to assess? Please indicate on a scale from 0 to 10, where 0 is not at all sufficient and 10 is sufficient”. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3633428_d3
title: Additional file 4: Table S4. of Identification of new heading date determinants in wheat 5B chromosome

description: Results of blastn analysis for SNP sequences, located in the QTL region. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3633401_d8
title: Additional file 2: Table S2. of Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland

description: Real-time quantitative RT-PCR validation of RNA-seq data. (XLS 39Â kb)
DOI: 10.15468/dl.eb96wm
title: Occurrence Download

description: A dataset containing 708150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "Year is not null",
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America)"
 ]
}

 The dataset includes 708150 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033946-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3633470_d13
title: Additional file 20: Tree S10. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: POY Tree, estimated using parameter scheme 3211 (see Methods section). (TRE 12 kb)
DOI: 10.6084/m9.figshare.c.3633470_d14
title: Additional file 14: Tree S4. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: MrBayes 50% majority consensus tree with support statistics. (TRE 270 kb)
DOI: 10.6084/m9.figshare.c.3633470_d15
title: Additional file 13: Table S7. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: Robinson-Fold distance and proportion of shared clades between ML analyses using datasets ALL, G20 and DT3 as well as BI with MrBayes using G20 dataset. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3633470_d16
title: Additional file 17: Tree S7. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: POY Tree, estimated using parameter scheme 121 (see Methods section). (TRE 12 kb)
DOI: 10.6084/m9.figshare.c.3633470_d17
title: Additional file 12: Tree S3. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: Scarabaeinae ML tree of dataset DT3. (TREE 37 kb)
DOI: 10.6084/m9.figshare.c.3633470_d18
title: Additional file 2: Table S2. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: List of genera with author citations. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3633470_d19
title: Additional file 15: Tree S5. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: MrBayes 50% majority consensus tree with collapsed ambiguous branches (see Additional file 6 for details). (TRE 21 kb)
DOI: 10.6084/m9.figshare.c.3633644_d3
title: Additional file 3: Table S3. of Multiple-locus variable-number tandem repeat analysis potentially reveals the existence of two groups of Anaplasma phagocytophilum circulating in cattle in France with different wild reservoirs

description: MLVA profiles of the 198 A. phagocytophilum samples included in this study. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3633623_d6
title: Additional file 8: of Sea lampreys elicit strong transcriptomic responses in the lake trout liver during parasitism

description: Siscowet IPA: All IPA pathways compared to the edgeR analysis of parasitized and nonparasitized siscowet lake trout. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.c.3633623_d8
title: Additional file 1: of Sea lampreys elicit strong transcriptomic responses in the lake trout liver during parasitism

description: Sequences: Number of sequences obtained for each individual sample/treatment and the number of sequences mapped/individual/treatment. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3633665_d1
title: Additional file 1: of 
                     Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

description: Microarray data analysis from DHA treatment. Limma results from 1, 2, and 3Â h 500 nM DHA treatments in P. falciparum K1 trophozoites. (XLS 2986Â kb)
DOI: 10.6084/m9.figshare.c.3633656_d3
title: Additional file 2: Table S2. of MicroRNA-200c and microRNA-31 regulate proliferation, colony formation, migration and invasion in serous ovarian cancer

description: Complete list of the 85 miRNAs evaluated across all samples. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3633665_d2
title: Additional file 6: of 
                     Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

description: Summary of RNA-seq data preprocessing and read mapping to reference genomes. (XLS 7464Â kb)
DOI: 10.6084/m9.figshare.c.3633623_d9
title: Additional file 3: of Sea lampreys elicit strong transcriptomic responses in the lake trout liver during parasitism

description: Lean DESeq2: DESeq2 analysis of transcripts from parasitized versus nonparasitized lean livers. (XLSX 7559 kb)
DOI: 10.6084/m9.figshare.c.3633671_d1
title: Additional file 3: of KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily

description: Supplementary File S3. KinMutRF predictions on the human Bruton agammaglobulinemia tyrosine kinase domain. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.c.3633671_d2
title: Additional file 4: of KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily

description: Supplementary File S2. KinMutRF predictions on the unclassified variants in UniProt, including the prediction features that describe each variant. (TXT 155 kb)
DOI: 10.6084/m9.figshare.c.3633665_d3
title: Additional file 4: of 
                     Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

description: RNA-seq data analysis from DHA treatment of P. falciparum Limma results from 1Â h treatments with 500 nM DHA in P. falciparum K1 rings, trophozoites and schizonts. (XLS 2040Â kb)
DOI: 10.6084/m9.figshare.c.3634424_d7
title: MOESM3 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 3. Interpretive criteria for selected antimicrobial drugs. Table containing the following information related to MIC testing: antimicrobial, concentration(s) tested and threshold criteria for susceptible, intermediate or resistant.
DOI: 10.6084/m9.figshare.c.3634424_d8
title: MOESM5 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 5. Pathway analysis of 129 genes from the non-homologous IBK eye core genome and 189 genes from the non-homologous IBK asymptomatic nasopharyngeal core M. bovoculi genomes. Table containing the following information related to each pathway: name, type in parentheses and class. Pathways are subdivided into those predicted to have been acquired independently, those predicted to be encoded by the IBK eye core genome and those predicted to be encoded by the IBK asymptomatic nasopharyngeal core genome.
DOI: 10.48366/r790074
title: Sentinel-1 and Sentinel-2: Innovations in Remote Sensing for Water Quality, Vegetation, and Crop Monitoring

description: his collection explores the diverse applications of Sentinel-1 and Sentinel-2 data for environmental and agricultural monitoring. Topics include water quality assessment, vegetation cover estimation, bushfire severity mapping, and crop monitoring. Using advanced processing techniques and machine learning, these studies showcase how Sentinel data enhances land management and ecosystem monitoring. This collection offers valuable insights for researchers, remote sensing professionals, and students in environmental science, agriculture, and disaster management.
DOI: 10.6084/m9.figshare.c.3634439_d2
title: Additional file 2: Table S1. of Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes

description: Gene Ontology terms of transcripts found in the glowworm light organ (XLSX 231Â kb)
DOI: 10.6084/m9.figshare.c.3634448_d1
title: Additional file 2: Table S4. of 
                     Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

description: Pairwise comparisons of the SSU gene sequences among Cryptosporidium genotypes. Table S5. Pairwise comparisons of the gp60 gene sequences among Cryptosporidium genotypes. Table S6. Pairwise comparisons of the tpi gene sequences among Cryptosporidium genotypes. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3634457_d1
title: Additional file 2 of ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data

description: ENCODE data sets used in ChromNet (1451 total). (TXT 34 kb)
DOI: 10.6084/m9.figshare.c.3634463_d1
title: MOESM7 of Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

description: Additional file 7: Biological pathway analysis of the predicted miRNA targets. Functional analysis of the miRNA target genes, showing the canonical pathways altered in S. Typhimurium infection.
DOI: 10.6084/m9.figshare.c.3634463_d2
title: MOESM6 of Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

description: Additional file 6: Results of prediction analysis of miRNA target genes. Prediction of target genes of miRNAs found differentially expressed in the porcine ileum at 2 dpi, describing data sources and confidence of the analysis.
DOI: 10.6084/m9.figshare.c.3634463_d3
title: MOESM3 of Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

description: Additional file 3: mRNA expression microarray results of the Salmonella-infected porcine gut. Results of the differential gene expression from infected pigs at 1, 2 and 6 dpi compared to the non-infected controls in the different sections of the porcine gut.
DOI: 10.6084/m9.figshare.c.3634463_d4
title: MOESM2 of Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

description: Additional file 2: Primers used for qPCR validations. List of designed primers used for mRNA and miRNA qPCR validations.
DOI: 10.6084/m9.figshare.c.3634463_d5
title: MOESM1 of Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

description: Additional file 1: Serum chemistry profile results from pigs along the time course of infection with S. Typhimurium. Table showing the results of the serum chemistry panel analysis and statistical results of the comparison among infection time points.
DOI: 10.5281/zenodo.14456696
title: Dataset: Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Training, validation, and testing datasets used in Machine Learning-Based Grading of Engine Health for High-Performance Vehicles
DOI: 10.5281/zenodo.14456697
title: Dataset: Machine Learning-Based Grading of Engine Health for High-Performance Vehicles

description: Training, validation, and testing datasets used in Machine Learning-Based Grading of Engine Health for High-Performance Vehicles
DOI: 10.6084/m9.figshare.c.3634556_d5
title: MOESM1 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

description: Additional file 1: Table S1. SNP genotype, pregnancy status, age, lactation number and lactation status for the cows used for analyses of protein concentrations and ligand binding.
DOI: 10.6084/m9.figshare.c.3634565_d3
title: Additional file 6: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Secretary proteins of S. oryzae and their pfam domains. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3634565_d6
title: Additional file 3: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Pathogenicity gene orthologs in Sarocladium oryzae in comparison to other fungal species. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3634565_d8
title: Additional file 8: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Cytochrome P450 gene families in S. oryzae. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3634661_d12
title: Additional file 13: Table S12. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression profile of divergently paired protein-coding genes and lncRNAs that are co-expressed across 43 human tissues and cell types. (XLSX 533 kb)
DOI: 10.6084/m9.figshare.c.3634661_d11
title: Additional file 6: Table S5. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNA transcripts and loci identified in HSC myofibroblasts, HSC myofibroblasts during serum starvation, and HSC myofibroblasts after TGF-Î˛ stimulation. (XLS 3456 kb)
DOI: 10.6084/m9.figshare.c.3634661_d13
title: Additional file 7: Table S6. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression levels of all lncRNA loci in each condition of HSC. (XLS 408 kb)
DOI: 10.6084/m9.figshare.c.3634661_d15
title: Additional file 4: Table S3. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNA transcripts and loci found in HSC myofibroblasts. (XLS 1520 kb)
DOI: 10.6084/m9.figshare.c.3634661_d14
title: Additional file 10: Table S9. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNAsâ   association with SMAD3, super-enhancers, and restricted expression in HSCs. (XLS 312 kb)
DOI: 10.6084/m9.figshare.c.3634661_d16
title: Additional file 12: Table S11. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression levels of lncRNAs and their divergent paired coding genes in HSC myofibroblasts. (XLS 310 kb)
DOI: 10.6084/m9.figshare.c.3634826_d2
title: Additional file 9: Table S5. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Physical localization and expression in different organs of the functional candidate genes potentially involved in the repeated QTLs identified. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3634826_d1
title: Additional file 8: Table S4. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: List of the biological functions most probably related to the mapped QTLs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3634826_d3
title: Additional file 5: Table S2. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Genome regions not covered by genetic maps (gaps &gt; 5 cM within linkage groups, or &gt; 1.6 Mb at the ends of linkage groups). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3634826_d7
title: Additional file 3: Table S1. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Correlation (Spearman coefficient) between environments. Suffixes G, F.1, F.2, cool and hot stand for greenhouse, first replicate, second replicate, cool and hot treatments during experiments in growth rooms, respectively. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3634826_d8
title: Additional file 11: Table S6. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Summary of the climatic data for the different experiments. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3634826_d9
title: Additional file 7: Table S3. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: All significant quantitative trait loci (QTL) detected. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3634841_d1
title: Additional file 5: of The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function

description: DESeq based differential expression data for all Nasonia 2.0 gene models merged with the new gene models identified in this study. (XLSX 3636Â kb)
DOI: 10.6084/m9.figshare.c.3634841_d2
title: Additional file 3: of The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function

description: Novel venom gland and ovary transcribed regions predicted by cufflinks. (TXT 406Â kb)
DOI: 10.6084/m9.figshare.c.3634841_d3
title: Additional file 4: of The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function

description: Genomic locations of 472 new gene predictions based on the ovary and VG RNA-seq data. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3634841_d5
title: Additional file 1: of The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function

description: DESeq results from the VG and Ovary RNA-seq data for all Nasonia 2.0 gene models. (XLSX 3172Â kb)