cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14500789
title: Westcountry demonstrator water quality monitoring data for R. Axe and R, Camel Catchments - July 2022 to December 2024

description: TransformAr Westcountry Demonstrator Water Quality Monitoring. 

This data set includes water quality monitoring data for the River Axe (Devon, UK) and River Camel (Cornwall , UK). Catchment water quality monitoring supports the development (design, site selection, performance) of Nature Based Solutions to mitigate nutrient loadings in vulnerable Nutrient Neutrality catchments.  This data set includes primarily pre-intervention monitoring data with any post intervention measurements clearly marked. 

Several types of data included:

Westcountry WQ monitoring data for Axe and Camel Catchments (TransformAr).xls

1.      Westcountry Rivers Trust in-house monthly spot monitoring: This high specification field-data provides both catchment scale monitoring and targeted monitoring at NBS intervention sites. Equipment used includes: 

Equipment used: Hach DR900 Robust portable datalogging colourimeter: Hach Pocket pro+ Multi 2 Tester

Data storage Platform: Cartographer

2.      Westcountry Citizen Science Investigations:   Volunteers use simple low-cost equipment to record quantitative and semi-quantitative information on temperature, electrical conductivity, turbidity and phosphate (semi-quantitative). Despite the lower accuracy of the equipment, these data provide a valuable baseline and excellent spatial coverage of our target catchmments.  More information on CSI can be found at https://storymaps.arcgis.com/stories/83c5528afaba4b37813be5f6cdb5af22  

      Equipment used: HM Digital TDS-4TM probe: La Motte Insta-Test Low Range Test Strips; turbidity tube (Secchi disk) 

Data storage Platform: Cartographer

3.       UK Environment Agency statutory monitoring data is included where relevant to add a valuable comparative data set.  More information can be found at: https://environment.data.gov.uk/water-quality/view/landing

Westcountry Electrofishing data for Axe and Camel Catchments (TransformAr).xls

1.      Electric fishing uses a controlled electric current to induce fish to swim towards an anode and into a hand net to be counted and assessed. When carried out correctly by a qualified surveyor it is not harmful to fish. An electric fishing backpack is used as the best method to target salmonoids in the Westcountry. 

More information can be found here: https://issuu.com/westcountryriverstrust/docs/wrt_ef_2022_report_camel
DOI: 10.15468/dl.pe8fma
title: Occurrence Download

description: A dataset containing 6316398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February, March, April, May, June, July, August)",
 "TaxonKey is Plantae",
 "Year is 2022"
 ]
}

 The dataset includes 6316398 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033539-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14501181
title: Data for "Inverse catalysts: Tuning the composition and structure of oxide clusters through the metal support"

description: Dataset containing all optimized inverse catalyst structures (ZnO and InO on Cu(111), Pd(111), and Au(111)) created for the paper "Inverse catalysts: Tuning the composition and structure of oxide clusters through the metal support".

The data is provided in the ASE trajectory (.traj) file format. Every .traj file contains all local minima for a single combination of nanocluster metal, surface metal, number of nanocluster metal atoms, and number of nanocluster oxygen atoms, sorted by potential energy.
DOI: 10.5281/zenodo.14501182
title: Data for "Inverse catalysts: Tuning the composition and structure of oxide clusters through the metal support"

description: Dataset containing all optimized inverse catalyst structures (ZnO and InO on Cu(111), Pd(111), and Au(111)) created for the paper "Inverse catalysts: Tuning the composition and structure of oxide clusters through the metal support".

The data is provided in the ASE trajectory (.traj) file format. Every .traj file contains all local minima for a single combination of nanocluster metal, surface metal, number of nanocluster metal atoms, and number of nanocluster oxygen atoms, sorted by potential energy.
DOI: 10.15468/dl.9xeprt
title: Occurrence Download

description: A dataset containing 12426398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (February, March, April, May, June, July, August, September, October, November, December)",
 "TaxonKey is Plantae",
 "Year 2023-2023"
 ]
}

 The dataset includes 12426398 records from 739 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006923-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14697361
title: Závěrečná zpráva analýzy a dataset k článku Unikátní kamenný kadlub na hrot kopí z Morkůvek na jižní Moravě jako příklad dálkového importu v době popelnicových polí

description: Popis úložiště:

Toto úložiště obsahuje závěrečnou zprávu a dataset z analýzy kamenné formy na odlévání bronzových kopí z lokality Morkůvky.

Popis datasetu:

Tento dataset obsahuje spektra a skript v jazyce R pro vytvoření grafů obsažených v souvisejícím článku.

Metodologie:Spektra byla získána pomocí energie-disperzního rentgenového fluorescenčního spektrometru Rigaku NEX-CG. Vzorky byly analyzovány ve formě stlačeného prášku.

Obsah úložiště:Toto úložiště obsahuje:



Spektrální data: Relevantní část spekter prvků Cu, Sn a Pb, která byla získána pomocí sekundárních terčíků z hliníku (Al) a molybdenu (Mo).

Datový soubor: relativni-intenzity.csv, obsahující energetické hodnoty jednotlivých prvkových čar.

Skript v jazyce R: Automatizovaný skript pro načtení spektrálních dat, zpracování relativních intenzit a vizualizaci spekter v podobě grafů.


Použití:Skript umožňuje snadnou reprodukci grafických výstupů díky načítání souborů z aktuálního adresáře, ve kterém je skript uložen. Pro spuštění je nutné mít nainstalované knihovny ggplot2 a rstudioapi.

Výzkum byl podpořen projektem Připraveni na budoucnost (CZ.02.01.01/00/22_008/0004593).
DOI: 10.5281/zenodo.14697362
title: Závěrečná zpráva analýzy a dataset k článku Unikátní kamenný kadlub na hrot kopí z Morkůvek na jižní Moravě jako příklad dálkového importu v době popelnicových polí

description: Popis úložiště:

Toto úložiště obsahuje závěrečnou zprávu a dataset z analýzy kamenné formy na odlévání bronzových kopí z lokality Morkůvky.

Popis datasetu:

Tento dataset obsahuje spektra a skript v jazyce R pro vytvoření grafů obsažených v souvisejícím článku.

Metodologie:Spektra byla získána pomocí energie-disperzního rentgenového fluorescenčního spektrometru Rigaku NEX-CG. Vzorky byly analyzovány ve formě stlačeného prášku.

Obsah úložiště:Toto úložiště obsahuje:



Spektrální data: Relevantní část spekter prvků Cu, Sn a Pb, která byla získána pomocí sekundárních terčíků z hliníku (Al) a molybdenu (Mo).

Datový soubor: relativni-intenzity.csv, obsahující energetické hodnoty jednotlivých prvkových čar.

Skript v jazyce R: Automatizovaný skript pro načtení spektrálních dat, zpracování relativních intenzit a vizualizaci spekter v podobě grafů.


Použití:Skript umožňuje snadnou reprodukci grafických výstupů díky načítání souborů z aktuálního adresáře, ve kterém je skript uložen. Pro spuštění je nutné mít nainstalované knihovny ggplot2 a rstudioapi.

Výzkum byl podpořen projektem Připraveni na budoucnost (CZ.02.01.01/00/22_008/0004593).
DOI: 10.5281/zenodo.14697511
title: Basilian Art Network in Poland-Lithuania in the 18th century

description: The dataset concerning Basilian Art Network in Poland-Lithuania in the 18th century consists of 4 files:

Actions are emporal event concerning an artefact, monastery, place and person representing Basilians' artistic activity. This layer cointains all information about actions collected during the project along with their ID, name of action, monastery where the action took place (along with its ID), date start and end (that can mean terminus ante quem), cost, other monastery involved (along with its role), place involced (along with its role), artefact involved (along with its ID), person involved (along wih their ID and role). The URL for external pictures is available. Including IDs in the table makes it possible to relate it to other tables available in the dataset. Records representing actions are multiplicated due to one-to-many relation in the source database. Attributes are available in Polish and English.

Artefacts (artworks) located in Basilian monasteries. This layer cointains all information about artefacts along with their: ID, type (specific and general), material, formal solution (specific features of artefacts, eg. altars or churches), location (monastery), as well as being a part of another artefact (e.g. altar in a church). Attributes (with the exception of artefact's name) are available in Polish and English.

Monasteries in Poland-Lithuania functioning in the 18th century. This layer cointains all information about monasteries collected in the project: ID, name (basic, variant, modern), political and administrative affiliation, ecclesiastical affiliation, location (WGS-84 coordinates), dates of their existence as well as arrangement types (how each monastery was arranged internally and against its vicinities). Attributes (with the exception of monastery's name) are available in Polish and English.

People related to the artistic network of Basilian order. This layer cointains all information about people along with their ID, name/surname and type (specific and general). Records representing people characterised by multiple types are multiplicated. Attributes are available in Polish and English.
DOI: 10.5281/zenodo.14697512
title: Basilian Art Network in Poland-Lithuania in the 18th century

description: The dataset concerning Basilian Art Network in Poland-Lithuania in the 18th century consists of 4 files:

Actions are emporal event concerning an artefact, monastery, place and person representing Basilians' artistic activity. This layer cointains all information about actions collected during the project along with their ID, name of action, monastery where the action took place (along with its ID), date start and end (that can mean terminus ante quem), cost, other monastery involved (along with its role), place involced (along with its role), artefact involved (along with its ID), person involved (along wih their ID and role). The URL for external pictures is available. Including IDs in the table makes it possible to relate it to other tables available in the dataset. Records representing actions are multiplicated due to one-to-many relation in the source database. Attributes are available in Polish and English.

Artefacts (artworks) located in Basilian monasteries. This layer cointains all information about artefacts along with their: ID, type (specific and general), material, formal solution (specific features of artefacts, eg. altars or churches), location (monastery), as well as being a part of another artefact (e.g. altar in a church). Attributes (with the exception of artefact's name) are available in Polish and English.

Monasteries in Poland-Lithuania functioning in the 18th century. This layer cointains all information about monasteries collected in the project: ID, name (basic, variant, modern), political and administrative affiliation, ecclesiastical affiliation, location (WGS-84 coordinates), dates of their existence as well as arrangement types (how each monastery was arranged internally and against its vicinities). Attributes (with the exception of monastery's name) are available in Polish and English.

People related to the artistic network of Basilian order. This layer cointains all information about people along with their ID, name/surname and type (specific and general). Records representing people characterised by multiple types are multiplicated. Attributes are available in Polish and English.
DOI: 10.6084/m9.figshare.27939312
title: Landscape-level human disturbance results in loss and contraction of mammalian populations in tropical forests

description: Dataset for Greco et al. 2025. "Landscape-level human disturbance results in loss and contraction of mammalian populations in tropical forests". PLOS Biology. Data are camera trapping detections of mammals across 37 pan-tropical forests in 3 continents.
DOI: 10.5281/zenodo.14697718
title: Using Treated Wastewater for Non-Potable Household Uses in Peri-Urban India: Is It Affordable for the Users?

description: This datafile has originally been published as supporting information for the publication:

 10.3390/w16192838 

Using Treated Wastewater for Non-Potable Household Uses in Peri-Urban India: Is It Affordable for the Users?

Further details can be found in this publication.
DOI: 10.5281/zenodo.14697719
title: Using Treated Wastewater for Non-Potable Household Uses in Peri-Urban India: Is It Affordable for the Users?

description: This datafile has originally been published as supporting information for the publication:

 10.3390/w16192838 

Using Treated Wastewater for Non-Potable Household Uses in Peri-Urban India: Is It Affordable for the Users?

Further details can be found in this publication.
DOI: 10.60656/1961a5b1c9014a20
title: Custom collection of ice water content data from Lampedusa on 17 Aug 2024
DOI: 10.5284/1123086
title: Data from an Evaluation at Burstall Lane, Sproughton, Babergh, Suffolk, August-September 2019

description: This collection includes site photographs, CAD data, spreadsheets, a database and site records from a programme of archaeological evaluation at Burstall Lane, Sproughton, Suffolk (TM 11864 45046) conducted by Oxford Archaeology East (OA East) between the 27th August and the 13th September 2019.
DOI: 10.5281/zenodo.14697504
title: reference data for TidyGWAS

description: Reference data curated for tidyGWAS.

Contains:



RSID, CHR, POS, ALT ALLELE and REF ALLELE from dbSNP v155, for both GRCh37 and GRCh38

Allele frequencies for five super populations from 30x 1000 genomes

dbSNP merged RSID data
DOI: 10.34740/kaggle/dsv/10524901
title: World Weather Repository ( Daily Updating )
DOI: 10.5281/zenodo.14697727
title: The Human Microglia Atlas (HuMicA)

description: .rds seurat object of the integrated HuMicA object.
DOI: 10.5281/zenodo.14677688
title: Nanoscale Dynamics of Enhancer-Promoter Interactions during Exit from Pluripotency

description: This Zenodo repository contains data generated for our manuscript. 

It contains:



fig1.csv: color/shift corrected, pairwise enhancer-promoter coordinates and distances, in naive and primed mouse embryonic stem cells (mESCs), measured with a spinning disk confocal microscope

fig2.csv: multiway enhancer-promoter coordinates and distances for promoters with all their enhnacers, in naive and primed mESCs, measured with a STED mircoscope

fig3.csv: coordinates and distances between the Dppa3 promoter, its closest ehnacer and closest intron RNA, in naive mESCs, measured with a STED microscope

region_coordinates_mm9.csv: target names (promoters and enhnacers by the distance from their promoter) and the coordinates of the probed genomic region in mm9
DOI: 10.35097/1938
title: Raw data: Continuous flow oxidation of HMF using supported AuPd-alloy

description: TEM raw data for the publication "Continuous flow oxidation of HMF using supported AuPd-alloy"
PDF file for information on sample labeling
DOI: 10.15468/dl.ymr8a6
title: Occurrence Download

description: A dataset containing 373081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Odonata Central"
 ]
}

 The dataset includes 373081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004066-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35097/3zyxt1k6687b1w8z
title: Raw data for Enhancing the oxidative cleavage of vicinal diols on Fe-ZSM-5 catalysts with hierarchical porosity

description: Raw data that was collected for the use in the publication Enhancing the oxidative cleavage of vicinal diols on Fe-ZSM-5 catalysts with hierarchical porosity
DOI: 10.15468/dl.wy3cyn
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola cazorlensis Gand."
 ]
}

 The dataset includes 514 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004080-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46qmt3
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola cazorlensis Gand."
 ]
}

 The dataset includes 514 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004081-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zut5kp
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica (Bowdich, 1822)",
 "Country is Japan",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 122 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004083-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5uvsf
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vespa soror Buysson, 1905)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 318 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004086-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbd2vj
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Orthoptera collection (EO) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Geometry POLYGON((48.54318 -11.18795,47.25932 -13.79234,44.21476 -15.88319,42.78417 -20.6151,42.96758 -24.94352,46.48901 -26.48415,48.32309 -23.8064,51.03752 -16.10327,50.81743 -12.61853,48.54318 -11.18795))"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004089-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew7g4g
title: Occurrence Download

description: A dataset containing 1978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica (Bowdich, 1822)",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1978 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004091-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c3pj5
title: Occurrence Download

description: A dataset containing 102081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is India Biodiversity Portal publication grade dataset"
 ]
}

 The dataset includes 102081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004075-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4pn8a
title: Occurrence Download

description: A dataset containing 509294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((73 26,97 26,97 42,73 42,73 26))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 509294 records from 332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004090-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvykbq
title: Occurrence Download

description: A dataset containing 19412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 1928",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 19412 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005913-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30127366
title: The genomic data utilized in the study titled "Genetic Analysis and Quantitative Trait Loci Detection of Udder Traits in Jersey Cattle"

description: The DNA was extracted from 1,631 Jersey cows, and 1× genome resequencing was performed using 150 bp paired-end reads on the Illumina HiSeq 3000 platform. The quality of the raw reads was assessed using FastQC (v0.12.1), ensuring a minimum Phred quality score of 20, This dataset contains imputed genomic data for Jersey cows. The raw sequencing reads were cleaned by removing adapter contamination and reads with &gt;10% ambiguous bases (N). Clean reads were aligned to the cattle reference genome (ARS-UCD1.2/bosTau9) using BWA (v0.7.12). SAM files were converted to BAM files with SAMtools (v1.2), and PCR duplicates were removed using Picard's MarkDuplicates tool (v1.119). Realignment and recalibration were done using GATK (v3.8). The data were imputed using GLIMPSE (v1.1.0) with reference data from the 8th run of the 1000 Bull Genomes Project.
DOI: 10.6084/m9.figshare.30127366.v1
title: The genomic data utilized in the study titled "Genetic Analysis and Quantitative Trait Loci Detection of Udder Traits in Jersey Cattle"

description: The DNA was extracted from 1,631 Jersey cows, and 1× genome resequencing was performed using 150 bp paired-end reads on the Illumina HiSeq 3000 platform. The quality of the raw reads was assessed using FastQC (v0.12.1), ensuring a minimum Phred quality score of 20, This dataset contains imputed genomic data for Jersey cows. The raw sequencing reads were cleaned by removing adapter contamination and reads with &gt;10% ambiguous bases (N). Clean reads were aligned to the cattle reference genome (ARS-UCD1.2/bosTau9) using BWA (v0.7.12). SAM files were converted to BAM files with SAMtools (v1.2), and PCR duplicates were removed using Picard's MarkDuplicates tool (v1.119). Realignment and recalibration were done using GATK (v3.8). The data were imputed using GLIMPSE (v1.1.0) with reference data from the 8th run of the 1000 Bull Genomes Project.