cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p97v2s51
title: Illinois River at Marseilles, IL - 2022/06/07 Field Measurements of Flow Velocity

description: Field measurements of flow velocity were acquired from a reach of the Illinois River at Marseilles, IL, on June 7, 2022, to support research on estimating surface flow velocities from remotely sensed data via particle image velocimetry (PIV). The velocity measurements included in this data release were obtained using a TRDI RiverPro acoustic Doppler current profiler (ADCP) deployed from a boat with an outboard motor. This data release provides depth-averaged flow velocities derived from the raw ADCP data using the TRDI WinRiver II processing software. The spatial location of each velocity measurement was obtained using a differential GPS included as part of the RiverPro instrument package. The map projection and datum for these data are UTM Zone 16 N and WGS84, respectively. This data release consists raw ADCP measurements of flow velocity, channel geometry, and river discharge, provided as raw *.mmt and *.pd0 files; output from Velocity Mapping Toolbox (VMT) for each ADCP cross-section provided as .xlsx files; and spatial coordinates and depth-averaged flow velocity magnitude and direction for each ADCP cross-section provided as a .csv file. This field-based data set was used to assess the accuracy of remotely sensed estimates of surface flow velocity derived from thermal image sequences via PIV.
DOI: 10.34945/f5fk5c
title: Home-cage monitoring spontaneous activity of C57BL/6J male mice 3 months after open-field low-intensity blast exposure

description: STUDY PURPOSE: Evaluate the chronic-phase behavioral alterations 3 months after exposure to low-intensity blast in a home-cage-like environment. DATA COLLECTED: A total of 52 male C57Bl/6J mice, 8 weeks old, were used. The mice were randomly allocated into one of two groups: Blast (n=29) or Sham (n=23). Mice in the Blast group were exposed to open-field low-pressure blast wave (46.6 kPa, maximum impulse of 60.0 kPa*ms), under anesthesia. Mice from the Sham group were anesthetized but were not exposed to the blast wave. 3 months post-exposure, the spontaneous activity of the mice was measured using the PhenoTyper® home-cages (L = 30 × W = 30 × H = 35 cm; Model 3000, Noldus Information Technology, The Netherlands). Each mouse was housed individually, and its activity was continuously measured for 72 hours at a sample rate of 15 fps. Program-acquired data were uploaded to the web-based AHCODA-DB (Sylics, Bilthoven, The Netherlands) for meta-analysis. Twenty behavioral parameters were analyzed and included in this dataset. See protocols and other related data in the relevant links section below. DATA USAGE NOTES:
DOI: 10.34945/f59w23
title: Home-cage monitoring general behavior of C57BL/6J male mice during the CognitionWall test 3 months after open-field LIB exposure

description: STUDY PURPOSE: Evaluate the chronic-phase behavioral alterations 3 months after exposure to low-intensity blast in a home-cage-like environment during the CognitionWall test. DATA COLLECTED: A total of 52 male C57Bl/6J mice, 8 weeks old, were used. The mice were randomly allocated into one of two groups: Blast (n=29) or Sham (n=23). Mice in the Blast group were exposed to open-field low-pressure blast wave (46.6 kPa, maximum impulse of 60.0 kPa*ms), under anesthesia. Mice from the Sham group were anesthetized but were not exposed to the blast wave. 3 months post-exposure, general behavior on the locomotor activity of the mice was measured using the PhenoTyper® home-cages (Model 3000, Noldus Information Technology, The Netherlands) and CognitionWall™ system (Noldus Information Technology, The Netherlands). All mice were familiar with the home-cage environment by being placed in the PhenoTypers for three days before conducting the CognitionWall assessments. Each mouse was housed individually, and its activity was continuously measured for 96 hours at a sample rate of 15 fps. Program-acquired data were uploaded to the web-based AHCODA-DB (Sylics, Bilthoven, The Netherlands) for meta-analysis. Eighteen behavioral parameters were analyzed and included in this dataset. See protocols and other related data in the relevant links section below. DATA USAGE NOTES:
DOI: 10.7488/ds/7471
title: JCM-2373852 Caco-2-HepaRG Cell Culture Media Optimisation & LC-MSMS analysis of APAP metabolism during Caco-2 cell culture
title: Metabolism of Acetaminophen by Enteric Epithelial Cells Mitigates Hepatocellular Toxicity In Vitro

description: The gut–liver axis is defined by dietary and environmental communication between the gut and the microbiome and the liver and its redox and immune systems, the overactivation of which can lead to hepatic injury. We used media preconditioning to mimic some aspects of the enterohepatic circulation by treating the human Caco-2 intestinal epithelial cell line with 5, 10 and 20 mM paracetamol (N-acetyl-para-aminophenol; APAP) for 24 h, after which cell culture supernatants were transferred to differentiated human hepatic HepaRG cells for a further 24 h. Cell viability was assessed by mitochondrial function and ATP production, while membrane integrity was monitored by cell impedance. Metabolism by Caco-2 cells was determined by liquid chromatography with tandem mass spectrometry. Caco-2 cell viability was not affected by APAP, while cell membrane integrity and tight junctions were maintained and became tighter with in-creasing APAP concentrations, suggesting a reduction in the permeability of the intestinal epithelium. During 24 h incubation, Caco-2 cells metabolised 64–68% of APAP, leaving 32–36% of intact starting compound to be transferred to HepaRG cells. When cultured with Caco-2-preconditioned medium, HepaRG cells also showed no loss of cell viability or membrane integrity, completely in contrast to direct treatment with APAP, which resulted in a rapid loss of cell viability and membrane integrity and, ultimately, cell death. Thus, the pre-metabolism of APAP could mitigate previously observed hepatotoxicity to hepatic tight junctions caused by direct exposure to APAP. These observations could have important implications for the direct exposure of hepatic parenchyma to APAP, administered via the intravenous route. The dataset relates to the upcoming publication Morgan K, Morley SD, Raja AK, Vandeputte M, Samuel K, Waterfall M, Homer NZM, Waterfall M, Hayes PC, Fallowfield JA, Plevris JN (2023). "Metabolism of Acetaminophen by Enteric Epithelial Cells Mitigates Hepatocellular Toxicity In Vitro". Journal of Clinical Medicine (accepted for publication).
description: JCM-2373852 Caco-2-HepaRG Cell Culture Media Optimisation Microsoft PowerPoint Presentation (.pptx) JCM-2373852 LC-MSMS analysis of APAP metabolism during Caco-2 cell culture Microsoft Excel Worksheet (.xlsx)
DOI: 10.6073/pasta/7801959fac9364c7286b0f6b0d03fc0f
title: Jornada Basin LTER: Wireless meteorological station at NPP C-SAND site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP C-SAND met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction; solar radiation; albedo. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP C-SAND site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.25380/iastate.21965093
title: University extension service hybrid maize yield trials, 1934 - 2014

description: Data from hybrid maize yeild trails conducted by the University of Illinois at Urbana-Champaign, Iowa State University, Kansas State University, and the University of Nebraska-Lincoln between 1934 and 2014. This digitized data was orginally published in Agricultural Experiment Station and Cooperative Extension Service reports and bulletins distributed in paper and, in later years, as Excel files. The data set includes brand and hybrid names, trial location, and yield (bushels per acre) for all trials and years. Additional data on agronomic phenotypes, soil type, and average weather is included when reported in the orginal publications. Details about the orginal publications, data processing, etc. can be found in the included readme file. A GitHub repositiry containing the R code used to munge the data is also publically available and linked as a reference.
DOI: 10.25380/iastate.21965093.v1
title: University extension service hybrid maize yield trials, 1934 - 2014

description: Data from hybrid maize yeild trails conducted by the University of Illinois at Urbana-Champaign, Iowa State University, Kansas State University, and the University of Nebraska-Lincoln between 1934 and 2014. This digitized data was orginally published in Agricultural Experiment Station and Cooperative Extension Service reports and bulletins distributed in paper and, in later years, as Excel files. The data set includes brand and hybrid names, trial location, and yield (bushels per acre) for all trials and years. Additional data on agronomic phenotypes, soil type, and average weather is included when reported in the orginal publications. Details about the orginal publications, data processing, etc. can be found in the included readme file. A GitHub repositiry containing the R code used to munge the data is also publically available and linked as a reference.
DOI: 10.25345/c5pc2tk4r
title: MassIVE MSV000092134 - Gender- and Age-Based Characterization and Comparison of the Murine Primary Peritoneal Mesothelial Cell Proteome
title: Raw and processed data in support of manuscript "Gender- and Age-Based Characterization and Comparison of the Murine Primary Peritoneal Mesothelial Cell Proteome" Zhikun Wang1,2, Yueying Liu1,2, Reihaneh Safavisohi1,2, Marwa Asem1,2, Daniel Hu1, Mary Sharon Stack1,2,3, Matthew M. Champion1,3 1Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame IN 46556; 2Harper Cancer Research Institute, University of Notre Dame, South Bend IN 46617
DOI: 10.6084/m9.figshare.23464484
title: Spatialomics significant genes per cluster for LAM Lung Tissue 1

description: Spatialomics significant genes per cluster for LAM Lung Tissue 1
DOI: 10.6084/m9.figshare.23464484.v1
title: Spatialomics significant genes per cluster for LAM Lung Tissue 1

description: Spatialomics significant genes per cluster for LAM Lung Tissue 1
DOI: 10.6084/m9.figshare.23464622
title: Spatialomics significant genes per cluster for LAM Lung Tissue 2

description: Spatialomics significant genes per cluster for LAM Lung Tissue 2 showing all significant genes per cluster
DOI: 10.6084/m9.figshare.23464622.v1
title: Spatialomics significant genes per cluster for LAM Lung Tissue 2

description: Spatialomics significant genes per cluster for LAM Lung Tissue 2 showing all significant genes per cluster
DOI: 10.18112/openneuro.ds004594.v1.0.0
title: Brain surface fingerprints
DOI: 10.6073/pasta/59c9d15654162452fb5c6ebc706b6b1f
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: 1-second summary precipitation data: 2013 - ongoing

description: 1-second summary precipitation data at NPP G-IBPE met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP G-IBPE site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437020, knb-lter-jrn.210437035, and knb-lter-jrn.210437050 for the NPP G-IBPE met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.5066/p9u2kiyy
title: Digital subsurface data from previously published contoured maps of interval thicknesses in the Southern Midcontinent region

description: This digital data release contains previously published contours of thickness values of 23 named geological horizons, ranging in age from Cambrian to Tertiary. In alphabetical order, these horizons are the Atokan, Chesterian, Cretaceous, Desmoinesian, Guadalupian, Jurassic, Kinderhookian, Leonardian, Lower Hunton, Meramecian, Missourian, Morrowan, Ochoan, Osagean, Simpson-Viola, Sylvan-Cason, Tertiary, Timbered Hills-Arbuckle, Triassic, Upper Hunton, Virgillian, Wolfcampian, and Woodford-Chatanooga. The thicknesses were published in plates in the back matter of the Sedimentary Cover ? North American Craton: U.S. volume of the larger Geological Society of America?s Decade of North American Geology effort. This volume, edited by L.L. Sloss, contains efforts from many geologists. In particular, the Southern Midcontinent plates were generated by K.S. Johnson, T.W. Amsden, R.E. Denison, S.P. Dutton, A.G. Goldstein, B. Rascoe, Jr., P.K Sutherland, and D.M. Thompson. In these thickness contours, spanning almost the entirety of the Phanerozoic, changes in basin configuration, uplift of source terranes, and resultant continental-scale depositional patterns can be witnessed.
DOI: 10.5519/qd.ke6dq8ea
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (12 records)
DOI: 10.5281/zenodo.7137207
title: Measuring the counterion cloud of soft microgels using SANS with contrast variation

description: The behavior of microgels and other soft and compressible colloidal particles depends on particle concentration in ways that are absent in their hard-particulate counterparts. For instance, poly-N-isopropylacrylamide (pNIPAM) microgels can spontanously deswell and reduce suspension polydispersity at high concentrations. Despite the pNIPAM network in these microgels is uncharged, the key to understand this distinct behavior relies on the existence of peripheric charged groups, which provide stability when deswollen, and the associated counterion cloud. When in close proximity, clouds of different particles overlap, effectively freeing the associated counterions, which are then able to exert an osmotic pressure that can potentially cause the microgels to change size. Up to to now, however, no direct measurement of such an ionic cloud exists, perhaps even for hard colloids, where it is referred to as electric double layer. Here, we use small-angle neutron scattering with contrast variation with different ions to isolate the change in the form factor directly related to the counterion cloud and obtain its radius and width. Our results highlight that modeling of microgel suspensions must unavoidably and explicitly consider the presence of this cloud, which is present for nearly all microgel particles synthesized today.
DOI: 10.5281/zenodo.7137206
title: Measuring the counterion cloud of soft microgels using SANS with contrast variation

description: The behavior of microgels and other soft and compressible colloidal particles depends on particle concentration in ways that are absent in their hard-particulate counterparts. For instance, poly-N-isopropylacrylamide (pNIPAM) microgels can spontanously deswell and reduce suspension polydispersity at high concentrations. Despite the pNIPAM network in these microgels is uncharged, the key to understand this distinct behavior relies on the existence of peripheric charged groups, which provide stability when deswollen, and the associated counterion cloud. When in close proximity, clouds of different particles overlap, effectively freeing the associated counterions, which are then able to exert an osmotic pressure that can potentially cause the microgels to change size. Up to to now, however, no direct measurement of such an ionic cloud exists, perhaps even for hard colloids, where it is referred to as electric double layer. Here, we use small-angle neutron scattering with contrast variation with different ions to isolate the change in the form factor directly related to the counterion cloud and obtain its radius and width. Our results highlight that modeling of microgel suspensions must unavoidably and explicitly consider the presence of this cloud, which is present for nearly all microgel particles synthesized today.
DOI: 10.5519/qd.ocjbd1hu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (17 records)
DOI: 10.6073/pasta/5a5e63214a4575acf70994c0e36f082c
title: Jornada Basin LTER: Wireless meteorological station at NPP M-RABB site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP M-RABB met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP M-RABB site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/fc116720ab6069df1fea726fd1dd828c
title: Jornada Basin LTER: Wireless substation at NPP T-WEST site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data is measured at 10cm, 20 cm, and 30 cm soil depths at the NPP T-WEST substation located in center of 70m x 70m Jornada LTER NPP T-WEST site. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.23464730
title: Kinase array dataset performed on LAM-cells in the presence of vehicle or 7µM Sorafenib.

description: Kinase array dataset from Fullmoon biosciences showing both raw data and analyzed expression for the kinase array performed on LAM-cells in the presence of vehicle or 7µM Sorafenib. <br> LAM-fibroblast spheorids were cultures in matrigel for 4 days inthe presence of vehicle or 7µM sorafenib, a multi=kinase inhibitor and protein collected for analysis. protein from three independent replicates for both vehicle and treated were pooled for this array.
DOI: 10.6084/m9.figshare.23464730.v1
title: Kinase array dataset performed on LAM-cells in the presence of vehicle or 7µM Sorafenib.

description: Kinase array dataset from Fullmoon biosciences showing both raw data and analyzed expression for the kinase array performed on LAM-cells in the presence of vehicle or 7µM Sorafenib. <br> LAM-fibroblast spheorids were cultures in matrigel for 4 days inthe presence of vehicle or 7µM sorafenib, a multi=kinase inhibitor and protein collected for analysis. protein from three independent replicates for both vehicle and treated were pooled for this array.
DOI: 10.5066/p9p659gu
title: Paleoecological data from sediment collected in 2020 from Santa Fe Lake, New Mexico

description: This dataset contains carbon and nitrogen stable isotope values, percent carbon and percent nitrogen, algal pigment data, and diatom taxonomy from lake sediment layers dating back to 1749 Common Era (CE) for Santa Fe lake, New Mexico. Subalpine and alpine lakes are typically sensitive indicators of anthropogenically driven global change. Lake sediment records in the western United States have documented increases in percent carbon, percent nitrogen, and primary productivity during the 20th century. Eutrophication of mountain lakes reflects the influences of atmospheric nutrient deposition and warming. We analyzed a short (49 cm) sediment core from Santa Fe Lake, NM to investigate patterns of change in lake biogeochemistry and algal biomarkers since about 1750, asking whether this lake, which is far from direct sources of air pollution and protected from direct land use, shared the same historical responses to anthropogenic changes as lakes in Rocky Mountain National Park. These data are proxies of past physical, ecological, and biogeochemical changes to a small subalpine lake, thus are useful for reconstructing change over time.
DOI: 10.5517/ccdc.csd.cc2fn15b
title: CCDC 2253581: Experimental Crystal Structure Determination

description: Related Article: Qiang Chen, Amber L. Thompson, Kirsten E. Christensen, Peter N. Horton, Simon J. Coles, Harry L. Anderson|2023|J.Am.Chem.Soc.|145|11859|doi:10.1021/jacs.3c03549
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn16c
title: CCDC 2253582: Experimental Crystal Structure Determination

description: Related Article: Qiang Chen, Amber L. Thompson, Kirsten E. Christensen, Peter N. Horton, Simon J. Coles, Harry L. Anderson|2023|J.Am.Chem.Soc.|145|11859|doi:10.1021/jacs.3c03549
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn17d
title: CCDC 2253583: Experimental Crystal Structure Determination

description: Related Article: Qiang Chen, Amber L. Thompson, Kirsten E. Christensen, Peter N. Horton, Simon J. Coles, Harry L. Anderson|2023|J.Am.Chem.Soc.|145|11859|doi:10.1021/jacs.3c03549
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8021357
title: Data for: "The effects of DEM resolution on the PyFLOWGO thermorheological lava flow model" paper

description: PyFLOWGO results for a topographic sensitivity analysis. These are the 5m step size results presented in the publication, additional results upon request.
DOI: 10.5281/zenodo.8021356
title: Data for: "The effects of DEM resolution on the PyFLOWGO thermorheological lava flow model" paper

description: PyFLOWGO results for a topographic sensitivity analysis. These are the 5m step size results presented in the publication, additional results upon request.
DOI: 10.6084/m9.figshare.23465795
title: Graduation design data

description: Graduation design data
DOI: 10.6084/m9.figshare.23465795.v1
title: Graduation design data

description: Graduation design data
DOI: 10.5281/zenodo.8021346
title: Table 2. Studies on psychiatric side effects of fluoroquinolones. The risk of bias and study quality assessed with the Effective Public Health Practice Project's Quality Assessment Tool for Quantitative Studies (QATQS) was presented as the global rating for each publication (3 – weak).

description: Studies on psychiatric side effects of fluoroquinolones. The risk of bias and study quality assessed with the Effective Public Health Practice Project’s Quality Assessment Tool for Quantitative Studies (QATQS) was presented as the global rating for each publication (3 – weak).