cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cv3kve
title: Occurrence Download

description: A dataset containing 96227 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-180 -40,180 -40,180 -22.5,-180 -22.5,-180 -40))",
 "Geometry POLYGON((-180 22.5,180 22.5,180 40,-180 40,-180 22.5))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aphididae"
 ]
}

 The dataset includes 96227 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001499-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjtmng
title: Occurrence Download

description: A dataset containing 2565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Thymallus thymallus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2565 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001509-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27645982
title: Proteomic profiling of oral squamous cell carcinoma tissues reveals altered immune-related proteins: implications for personalized therapy

description: Oral squamous cell carcinoma poses a substantial global health challenge marked by rising mortality rate. Recently, immunotherapy has shown promising results in cancer management by enhancing immune response. Thus, identifying additional immune-related markers is critical for advancing immunotherapy treatments. Data-independent acquisition (DIA) mass spectrometry approach was used to explore differentially expressed immune-related proteins in oral cancer tissues compared to adjacent non-cancerous tissues. Functional significance was identified through Gene Ontology, pathway, and network analysis. Gene expression of identified proteins was validated using transcriptomic data. DIA analysis identified 29,459 precursors corresponding to 3429 proteins. Among these, 1060 proteins were differentially expressed, with 166 being immune-related. Differentially regulated proteins were involved in innate immune response, mitochondrial ATP synthesis, and neutrophil degranulation. Pathway analysis of immune-related proteins showed perturbation in anti-tumor immunity-related pathways such as interferon signaling, TCR signaling, PD-1 signaling, and antigen processing and presentation. Significance of these pathways was further reinforced by the strong interactions identified in the protein–protein interaction network analysis. Additionally, gene expression analysis showed similar mRNA expression patterns for key proteins involved in altered pathways, including ISG15, IFIT1/3, HLA-A/C and OAS2/3. Further validation of these proteins could establish them as potential targets for personalized therapy.
DOI: 10.6084/m9.figshare.27645982.v2
title: Proteomic profiling of oral squamous cell carcinoma tissues reveals altered immune-related proteins: implications for personalized therapy

description: Oral squamous cell carcinoma poses a substantial global health challenge marked by rising mortality rate. Recently, immunotherapy has shown promising results in cancer management by enhancing immune response. Thus, identifying additional immune-related markers is critical for advancing immunotherapy treatments. Data-independent acquisition (DIA) mass spectrometry approach was used to explore differentially expressed immune-related proteins in oral cancer tissues compared to adjacent non-cancerous tissues. Functional significance was identified through Gene Ontology, pathway, and network analysis. Gene expression of identified proteins was validated using transcriptomic data. DIA analysis identified 29,459 precursors corresponding to 3429 proteins. Among these, 1060 proteins were differentially expressed, with 166 being immune-related. Differentially regulated proteins were involved in innate immune response, mitochondrial ATP synthesis, and neutrophil degranulation. Pathway analysis of immune-related proteins showed perturbation in anti-tumor immunity-related pathways such as interferon signaling, TCR signaling, PD-1 signaling, and antigen processing and presentation. Significance of these pathways was further reinforced by the strong interactions identified in the protein–protein interaction network analysis. Additionally, gene expression analysis showed similar mRNA expression patterns for key proteins involved in altered pathways, including ISG15, IFIT1/3, HLA-A/C and OAS2/3. Further validation of these proteins could establish them as potential targets for personalized therapy.
DOI: 10.6084/m9.figshare.27645982.v1
title: Proteomic profiling of oral squamous cell carcinoma tissues altered-related proteins: implications for personalized therapy

description: Oral squamous cell carcinoma poses a substantial global health challenge marked by rising mortality rate. Recently, immunotherapy has shown promising results in cancer management by enhancing immune response. Thus, identifying additional immune-related markers is critical for advancing immunotherapy treatments. Data-independent acquisition mass spectrometry approach was used to explore differentially expressed immune-related proteins in oral cancer tissues compared to adjacent non-cancerous tissues. Functional significance was identified through Gene Ontology, pathway, and network analysis. Gene expression of identified proteins was validated using transcriptomic data. DIA analysis identified 29,459 precursors corresponding to 3429 proteins. Among these, 1060 proteins were differentially expressed, with 166 being immune-related. Differentially regulated proteins were involved in innate immune response, mitochondrial ATP synthesis, and neutrophil degranulation. Pathway analysis of immune-related proteins showed perturbation in anti-tumor immunity-related pathways such as interferon signaling, TCR signaling, PD-1 signaling and antigen processing and presentation. Significance of these pathways was further reinforced by the strong interactions identified in the protein-protein interaction network analysis. Additionally, gene expression analysis showed similar mRNA expression patterns for key proteins involved in altered pathways, including ISG15, IFIT1/3, HLA-A/C and OAS2/3. Further validation of these proteins could establish them as potential targets for personalized therapy.
DOI: 10.15468/dl.ucecgh
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mortalidad de copépodos Mejillones"
 ]
}

 The dataset includes 360 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001510-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14227504
title: Carbon analysis_equipment based activity
DOI: 10.5281/zenodo.14227505
title: Carbon analysis_equipment based activity
DOI: 10.5281/zenodo.14227428
title: Supplementary Data for Manuscript "A relation of resistivity-hydraulic conductivity for fine-grained soil based on coupled electric double layer model and modified Kozeny-Carman model"
DOI: 10.5281/zenodo.14227429
title: Supplementary Data for Manuscript "A relation of resistivity-hydraulic conductivity for fine-grained soil based on coupled electric double layer model and modified Kozeny-Carman model"
DOI: 10.5281/zenodo.14227484
title: The method and data for Efficiency Evaluation of Listed Pharmaceutical Companies in China Using Three-Stage DEA with PCA Integration

description: The method and data used for this article
DOI: 10.5281/zenodo.14227485
title: The method and data for Efficiency Evaluation of Listed Pharmaceutical Companies in China Using Three-Stage DEA with PCA Integration

description: The method and data used for this article
DOI: 10.25345/c5f766k29
title: MassIVE MSV000096543 - RNA Pol II IP-MS and GFP-CUL3 IP-MS by DIA
title: DIA MS dataset for RNA Polymerase II (Pol II) or GFP-CUL3 co-immunoprecipitants prepared from human DLD-1 SPT5-AID cells treated with +/- NVP-2 +/- auxin (for Pol II IP) or +/- auxin (GFP IP).
DOI: 10.15468/dl.sa2wfy
title: Occurrence Download

description: A dataset containing 401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "Geometry POLYGON((107.07487 10.68874,109.46142 10.68874,109.46142 15.89263,107.07487 15.89263,107.07487 10.68874))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, LC, VU, DD)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta",
 "Year 1970-2024"
 ]
}

 The dataset includes 401 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001513-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27915924
title: <b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation.

description: Software tool designed to calculate 5’UTR properties, enabling the creation of oligonucleotides that can trigger gene-specific enhancement of protein translation.<br> An excel-based calculator - dGenhancer can be used to search for putative 5’UTR cis-acting elements, which functional activity could be determined by Gibbs energy-dependent secondary structure formation. <br> This version requires pre-calculated total Gibbs energies of the tested sequences. Prediction of total Gibbs energies (ΔG=ΔH–TΔS) of the 5’UTR structures can be performed using RNAstructure version 5.2. ΔGs are input data for final dGenhancer calculations as shown by Master A et al 2016<sup>1</sup> The algorithms of the calculator were constructed to visualize ΔG changes after <i>in silico</i> introduced single nucleotide substitutions (SNPs) of the 5’UTR sequences. These artificial SNPs differently affected overall sequence ΔGs (Gibbs energies) that were drawn by the dGenhancer to show regions where substitution can alter ΔGs the most, indicating putative <i>cis</i>-acting elements with the highest translational regulatory potential. -----------------------<br>S1 supplementary material: https://pmc.ncbi.nlm.nih.gov/articles/instance/4865139/bin/pone.0155359.s001.pdf <br>dGenhancer - previous localization: http://www.serwer1448847.home.pl/biotechnology/dGenhancer.xlsx <br>-----------------------<br>References:<br><br>1. Master A, Wójcicka A, Giżewska K, Popławski P, Williams GR, Nauman A. A Novel Method for Gene-Specific Enhancement of Protein Translation by Targeting 5'UTRs of Selected Tumor Suppressors. PLoS One. 2016 May 12;11(5):e0155359. doi: 10.1371/journal.pone.0155359. PMID: 27171412; PMCID: PMC4865139.https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155359<b>2. Master A</b>, Wojcicka A, Nauman A. The 5’UTR-dependent enhancement of protein translation efficiency triggered by self-transfecting 3’-aminoallyl-containing oligonucleotides (aa-dG<i>oligos</i>) targeting a pool of strongly folded transcript variants of the <i>THRB</i> suppressor gene. Molecular Therapy, Volume 22, Supplement 1, S38, May 2014.<br> Abstract: https://www.cell.com/molecular-therapy-family/molecular-therapy/pdf/S1525-0016(16)35113-9.pdf Poster: https://doi.org/10.6084/m9.figshare.27894564.v1contact: adam.master.science@gmail.com
DOI: 10.6084/m9.figshare.27915924.v1
title: <b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation.

description: Software tool designed to calculate 5’UTR properties, enabling the creation of oligonucleotides that can trigger gene-specific enhancement of protein translation.<br> An excel-based calculator - dGenhancer can be used to search for putative 5’UTR cis-acting elements, which functional activity could be determined by Gibbs energy-dependent secondary structure formation. <br> This version requires pre-calculated total Gibbs energies of the tested sequences. Prediction of total Gibbs energies (ΔG=ΔH–TΔS) of the 5’UTR structures can be performed using RNAstructure version 5.2. ΔGs are input data for final dGenhancer calculations as shown by Master A et al 2016<sup>1</sup> The algorithms of the calculator were constructed to visualize ΔG changes after <i>in silico</i> introduced single nucleotide substitutions (SNPs) of the 5’UTR sequences. These artificial SNPs differently affected overall sequence ΔGs (Gibbs energies) that were drawn by the dGenhancer to show regions where substitution can alter ΔGs the most, indicating putative <i>cis</i>-acting elements with the highest translational regulatory potential. -----------------------<br>S1 supplementary material: https://pmc.ncbi.nlm.nih.gov/articles/instance/4865139/bin/pone.0155359.s001.pdf <br>dGenhancer - previous localization: http://www.serwer1448847.home.pl/biotechnology/dGenhancer.xlsx <br>-----------------------<br>References:<br><br>1. Master A, Wójcicka A, Giżewska K, Popławski P, Williams GR, Nauman A. A Novel Method for Gene-Specific Enhancement of Protein Translation by Targeting 5'UTRs of Selected Tumor Suppressors. PLoS One. 2016 May 12;11(5):e0155359. doi: 10.1371/journal.pone.0155359. PMID: 27171412; PMCID: PMC4865139.https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155359<b>2. Master A</b>, Wojcicka A, Nauman A. The 5’UTR-dependent enhancement of protein translation efficiency triggered by self-transfecting 3’-aminoallyl-containing oligonucleotides (aa-dG<i>oligos</i>) targeting a pool of strongly folded transcript variants of the <i>THRB</i> suppressor gene. Molecular Therapy, Volume 22, Supplement 1, S38, May 2014.<br> Abstract: https://www.cell.com/molecular-therapy-family/molecular-therapy/pdf/S1525-0016(16)35113-9.pdf Poster: https://doi.org/10.6084/m9.figshare.27894564.v1contact: adam.master.science@gmail.com
DOI: 10.15468/dl.g36z8b
title: Occurrence Download

description: A dataset containing 2259260155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1970-2024"
 ]
}

 The dataset includes 2259260155 records from 34596 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001430-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4qxpm
title: Occurrence Download

description: A dataset containing 6097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Wilkiea F.Muell."
 ]
}

 The dataset includes 6097 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122085-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4scey
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba ramulosa Rollins"
 ]
}

 The dataset includes 12 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062058-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.desq29
title: Occurrence Download

description: A dataset containing 22552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margaritifera margaritifera (Linnaeus, 1758)"
 ]
}

 The dataset includes 22552 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017819-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4u54x
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ardisia odontophylla Wall. ex A.DC."
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011983-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzp52j
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agkistrodon taylori Burger & Robertson, 1951"
 ]
}

 The dataset includes 49 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099776-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vncawy
title: Occurrence Download

description: A dataset containing 5500553 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassicaceae"
 ]
}

 The dataset includes 5500553 records from 1897 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017820-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc54hj
title: Occurrence Download

description: A dataset containing 27583056 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Norwegian Species Observation Service"
 ]
}

 The dataset includes 27583056 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0366213-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6quysa
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gleditsia microphylla D.Gordon ex Y.T.Lee"
 ]
}

 The dataset includes 63 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0424791-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4bjru
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-83.2728218000000027 42.6474655999999968, -83.2728218000000027 42.6490233299999986, -83.2728218000000027 42.6516195299999978, -83.2728218000000027 42.6542157399999979, -83.2728218000000027 42.6566821400000009, -83.2728218000000027 42.6582398700000027, -83.2728218000000027 42.6603168400000001, -83.2728218000000027 42.6636919099999972, -83.2728218000000027 42.6660285000000030, -83.2728218000000027 42.6673266000000027, -83.2703606200000053 42.6673266000000027, -83.2681584999999984 42.6673266000000027, -83.2650496400000009 42.6673266000000027, -83.2620703099999986 42.6673266000000027, -83.2598681999999997 42.6673266000000027, -83.2598681999999997 42.6651198200000010, -83.2598681999999997 42.6636919099999972, -83.2598681999999997 42.6607062699999986, -83.2598681999999997 42.6586293000000012, -83.2598681999999997 42.6555138499999984, -83.2598681999999997 42.6535666899999981, -83.2598681999999997 42.6503214299999982, -83.2598681999999997 42.6474655999999968, -83.2625884600000035 42.6474655999999968, -83.2656973200000010 42.6474655999999968, -83.2688061799999986 42.6474655999999968, -83.2728218000000027 42.6474655999999968))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151840-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fs728
title: Occurrence Download

description: A dataset containing 4396 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteropus scapulatus Peters, 1862"
 ]
}

 The dataset includes 4396 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086551-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwwpct
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-83.2805022999999949 42.6451709999999977, -83.2805022999999949 42.6467685000000003, -83.2805022999999949 42.6480464999999995, -83.2805022999999949 42.6498569999999972, -83.2805022999999949 42.6514544999999998, -83.2805022999999949 42.6534779999999998, -83.2805022999999949 42.6561404999999993, -83.2774219799999997 42.6561404999999993, -83.2752976200000035 42.6561404999999993, -83.2738105699999949 42.6561404999999993, -83.2718986400000034 42.6561404999999993, -83.2698804999999993 42.6561404999999993, -83.2698804999999993 42.6543300000000016, -83.2698804999999993 42.6529455000000013, -83.2698804999999993 42.6517740000000032, -83.2698804999999993 42.6500699999999995, -83.2698804999999993 42.6477270000000033, -83.2698804999999993 42.6451709999999977, -83.2726421699999975 42.6451709999999977, -83.2757224900000068 42.6451709999999977, -83.2774219799999997 42.6451709999999977, -83.2805022999999949 42.6451709999999977))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151833-210914110416597/datasets/export for details.
DOI: 10.15468/dl.my99og
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Adesmia godoyae Reiche"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028102-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysrpw0
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Issue is Geodetic datum assumed WGS84",
 "HasCoordinate is true",
 "TaxonKey is Incilius cavifrons (Firschein, 1950)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 199 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001441-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44rb6y
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinolophus philippinensis Waterhouse, 1843"
 ]
}

 The dataset includes 353 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086554-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.