cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17872113
title: Data and Code for "Probing ground-state degeneracies of a strongly interacting Fermi-Hubbard model with superconducting correlations."

description: This folder contains the raw data and code used to generate the plots for the manuscript "Probing ground-state degeneracies of a strongly interacting Fermi-Hubbard model with superconducting correlations."

Figures and data processing

Two jupyer notebooks are included for outputting the data,and figures as presented in the main text and supplementary. 

To run the Jupyter notebooks, install Anaconda and execute the .yml file to create the appropriate environment:



conda env create -f 0_env.yml 


Active the environment by running: 



conda activate Plotting


Finally, open jupyer lab:



jupyter lab


to launch the notebooks.

Data is stored in the qcodes '.db' format. Datasets are transformed in the plotting functions to an xarray dataformat, before being processed. All databases obtained over the course of the measurements (pertaining to the manuscript) are included. A package has been included in the folder 'Plotting', which allows for automatically plotting any dataset with some minimal configuration options. 

The following files are included:

0_env.yml : conda environment required for running the notebooks.1_Main_Figures.ipynb: loads data from the databases and outputs the figures as shown in the main text.2_Supplementary_Figures.ipynb: loads data from the databases and outputs the figures as showni n the supplementary text. 

Numerical simulations

The code used to generate the numerical results is included in the 'Simulations' folder. Generated results are pre-stored in the 'Databases/Numerical' folder. Additional notebooks are presented that go through the analytical derivations as presented in the supplementary file.
DOI: 10.17026/ar/krpun3
title: PAN-00109174 - coin/coin-related, Duitse bezetting (1940-1945), 10 cent

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00109174&lt;/p&gt;
description: Modified: 2025-10-24T08:33:45+02:00
DOI: 10.17026/dans-xwg-ds3c
title: PAN-00120425 - terra sigillata cup type Drag. 27

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00120425&lt;/p&gt;
description: Modified: 2025-05-11T10:53:49+02:00
DOI: 10.15468/dl.q6r75m
title: Occurrence Download

description: A dataset containing 637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((152.347086 -32.336962, 152.293633 -32.285893, 152.228051 -32.285893, 152.281482 -32.336962, 152.347086 -32.336962))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 637 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042402-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dujv2m
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pavonia triloba",
 "Continent is Africa"
 ]
}

 The dataset includes 128 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042403-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtn4xw
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aglaophamus circinata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 962 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042404-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gzj2m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.156 2.245179, 100.085684 2.239611, 100.0171 2.223042, 99.95193999999999 2.195882, 99.891807 2.1588, 99.838185 2.11271, 99.79239200000001 2.058746, 99.755557 1.99824, 99.728585 1.93268, 99.71213899999999 1.863682, 99.70662400000001 1.792945, 99.71217300000001 1.72221, 99.728649 1.65322, 99.755646 1.587672, 99.792497 1.52718, 99.838295 1.473234, 99.891912 1.42716, 99.952029 1.390093, 100.017165 1.362945, 100.085718 1.346385, 100.156 1.340819, 100.226282 1.346385, 100.294835 1.362945, 100.359971 1.390093, 100.420088 1.42716, 100.473705 1.473234, 100.519503 1.52718, 100.556354 1.587672, 100.583351 1.65322, 100.599827 1.72221, 100.605376 1.792945, 100.599861 1.863682, 100.583415 1.93268, 100.556443 1.99824, 100.519608 2.058746, 100.473815 2.11271, 100.420193 2.1588, 100.36006 2.195882, 100.2949 2.223042, 100.226316 2.239611, 100.156 2.245179))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042405-251120083545085/datasets/export for details.
DOI: 10.7267/2z10wz84d
title: Microbial Communities Shape Chemical Fate During Wastewater Treatment: Implications for Low-Cost Treatment Optimization
title: ORWWT

description: This dataset includes chemical and microbial analysis data from three conventional biological wastewater treatment utilities. It contains raw non-targeted liquid chromatography-mass spectrometry (LC-MS) data in various formats, including MZxml, timeseries, wiff, wiff2, and wiff.scan, as well as annotated 16S rRNA amplicon sequencing data in fastq format. The dataset provides comprehensive documentation of each file type, sample names, as well as the methods used for data collection and processing. This data is intended to support further research on chemical degradation and microbial catalyzers in wastewater treatment systems. For specific details on the experimental setup, sampling protocols, and data analysis methods, please refer to the associated manuscript. (https://doi.org/10.1021/acsestwater.5c00660).
DOI: 10.17026/ar/5kyrvb
title: PAN-00129057 - coin/coin-related, Constantinus I (306-337), nummus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00129057&lt;/p&gt;
description: Modified: 2025-10-21T09:01:04+02:00
DOI: 10.15468/dl.gbjkm5
title: Occurrence Download

description: A dataset containing 3522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((151.156404 -32.518366, 151.115070 -32.478857, 151.064306 -32.478857, 151.105626 -32.518366, 151.156404 -32.518366))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3522 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042410-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30777305
title: bpd2025

description: GWAS sumstats from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.30777305.v2
title: bpd2025

description: GWAS sumstats from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.30777305.v1
title: bpd2025

description: GWAS sumstats from the Psychiatric Genomics Consortium (PGC)
DOI: 10.15468/dl.e4gy3c
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pegolettia senegalensis",
 "Continent is Africa"
 ]
}

 The dataset includes 532 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042411-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zsqr5
title: Occurrence Download

description: A dataset containing 1100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aglaophamus verrilli",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1100 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042412-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vxscb
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.624 2.254179, 103.553683 2.24861, 103.485099 2.232042, 103.419938 2.204882, 103.359806 2.1678, 103.306183 2.12171, 103.26039 2.067746, 103.223554 2.007239, 103.196582 1.94168, 103.180137 1.872681, 103.174622 1.801944, 103.180171 1.73121, 103.196647 1.662219, 103.223644 1.596672, 103.260495 1.53618, 103.306294 1.482234, 103.359911 1.43616, 103.420028 1.399093, 103.485164 1.371945, 103.553717 1.355385, 103.624 1.349819, 103.694283 1.355385, 103.762836 1.371945, 103.827972 1.399093, 103.888089 1.43616, 103.941706 1.482234, 103.987505 1.53618, 104.024356 1.596672, 104.051353 1.662219, 104.067829 1.73121, 104.073378 1.801944, 104.067863 1.872681, 104.051418 1.94168, 104.024446 2.007239, 103.98761 2.067746, 103.941817 2.12171, 103.888194 2.1678, 103.828062 2.204882, 103.762901 2.232042, 103.694317 2.24861, 103.624 2.254179))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 747 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042413-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14079373
title: Berita UII
DOI: 10.17026/ar/hzl8g0
title: PAN-00176537 - early medieval disc brooch with central cell variant A15

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00176537&lt;/p&gt;
description: Modified: 2025-08-04T14:52:24+02:00
DOI: 10.15468/dl.equgr6
title: Occurrence Download

description: A dataset containing 9143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((152.257520 -32.446708, 152.204555 -32.396293, 152.139794 -32.396293, 152.192737 -32.446708, 152.257520 -32.446708))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 9143 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042414-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbndg7
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pentatropis nivalis",
 "Continent is Africa"
 ]
}

 The dataset includes 258 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042415-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dvzmp
title: Occurrence Download

description: A dataset containing 1278 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.962 2.260179, 103.891683 2.25461, 103.823099 2.238042, 103.757937 2.210882, 103.697805 2.1738, 103.644182 2.127709, 103.598389 2.073746, 103.561553 2.013239, 103.534581 1.947679, 103.518135 1.878681, 103.51262 1.807944, 103.51817 1.73721, 103.534646 1.668219, 103.561643 1.602672, 103.598494 1.54218, 103.644293 1.488233, 103.69791 1.44216, 103.758027 1.405093, 103.823164 1.377945, 103.891717 1.361385, 103.962 1.355819, 104.032283 1.361385, 104.100836 1.377945, 104.165973 1.405093, 104.22609 1.44216, 104.279707 1.488233, 104.325506 1.54218, 104.362357 1.602672, 104.389354 1.668219, 104.40583 1.73721, 104.41138 1.807944, 104.405865 1.878681, 104.389419 1.947679, 104.362447 2.013239, 104.325611 2.073746, 104.279818 2.127709, 104.226195 2.1738, 104.166063 2.210882, 104.100901 2.238042, 104.032317 2.25461, 103.962 2.260179))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1278 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042417-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az24dn
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amastigos caperatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042416-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/v4clx9
title: PAN-00113620 - medieval badge: coin with needle construction

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00113620&lt;/p&gt;
description: Modified: 2025-09-03T16:13:53+02:00
DOI: 10.15468/dl.9hsxgp
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Arbutus occidentalis"
 ]
}

 The dataset includes 431 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042418-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/hjiehs
title: Anonymized Dataset for the Study of Parental Stress in Pediatric Ophthalmology Patients: USP Postdoctoral Research Project
title: Parental Stress and Pediatric Ophthalmology – Anonymized Dataset

description: This dataset contains anonymized data generated as part of a postdoctoral research project conducted at the University of São Paulo (USP), investigating the influence of parental stress on the quality of life and functional visual performance of children with ophthalmological conditions. The dataset includes cleaned and anonymized data tables, statistical outputs, and supporting documentation used for the analyses presented in the corresponding research manuscript.

All personal identifiers were removed following national data protection regulations and international ethical guidelines. The dataset is shared to ensure transparency, reproducibility, and to support secondary analyses by other researchers in ophthalmology, pediatrics, psychology, public health, and related fields.

The dataset includes:

Anonymized data tables in spreadsheet and protected PDF formats

A codebook describing all variables, scoring rules, and coding procedures

Statistical analysis scripts (R) used in all stages of cleaning and analysis

Supplementary materials and methodological documentation

This dataset adheres to the FAIR Principles (Findable, Accessible, Interoperable, and Reusable) and enables full reproducibility of the associated scientific analyses.
description: All data included in this dataset have been fully anonymized. No direct or indirect personal identifiers are present. The dataset was prepared following national and international ethical guidelines and complies with appropriate data protection standards.
For questions regarding data structure, analytic reproducibility, or methodological details, please contact the corresponding author.
description: Name: R, Version: 4.4.0
DOI: 10.17026/dans-zub-mua5
title: PAN-00121198 - terra sigillata cup type Drag. 27

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00121198&lt;/p&gt;
description: Modified: 2025-05-06T13:04:20+02:00
DOI: 10.15468/dl.e99k2z
title: Occurrence Download

description: A dataset containing 278170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ulex europaeus"
 ]
}

 The dataset includes 278170 records from 1818 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042368-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0449025
title: Data for: Phylogenomic resolution of marine to freshwater dinoflagellate transitions

description: Associated paper abstract: Dinoflagellates are an abundant and diverse group of protists that inhabit aquatic environments worldwide. They are characterized by numerous unique cellular and molecular traits, and have adapted to an unusually broad range of life strategies, including phototrophy, heterotrophy, parasitism, and all combinations of these. For most microbial groups, transitions from marine to freshwater environments are relatively rare, as changes in salinity are thought to lead to significant osmotic challenges that are difficult for the cell to overcome. Recent work has shown that dinoflagellates have overcome these challenges relatively often in evolutionary time, but because this is mostly based on single gene trees with low overall support, many of the relationships between freshwater and marine groups remain unresolved. Normally, phylogenomics could clarify such conclusions, but despite the recent surge in data, virtually no freshwater dinoflagellates have been characterized at the genome-wide level. Here, we generated 30 transcriptomes from cultures and single cells collected from freshwater environments to infer a robustly supported phylogenomic tree from 217 conserved genes, resolving at least seven transitions to freshwater in dinoflagellates. Mapping the distribution of ASVs from freshwater environmental samples onto this tree confirms these groups and identifies additional lineages where freshwater dinoflagellates likely remain unsampled. We also sampled two species of Durinskia, a genus of “dinotoms” with both marine and freshwater lineages containing Nitzschia-derived tertiary plastids. Ribosomal RNA phylogenies show that the host cells are closely related, but their endosymbionts are likely descended from two distantly-related freshwater Nitzschia species that were acquired in parallel and relatively recently.
DOI: 10.5281/zenodo.15604427
title: IODP Expedition 334 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.5281/zenodo.15604428
title: IODP Expedition 334 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.14288/1.0449004
title: Enregistrements libres

description: Base de données de l’Atlas sonore des variétés de français au Canada. Ces données sont constitués d'enregistrements libres, où les participants partagent leur réalité en tant que francophones au Canada. &lt;br&gt;&lt;br&gt; Ce projet vise à valoriser les différents accents de la francophonie canadienne et à les situer géographiquement. Vous pouvez voyager avec votre curseur d’un coin à l’autre du pays en écoutant les différents accents. &lt;br&gt;&lt;br&gt; Un de nos objectifs est aussi d’offrir un outil pédagogique pour les enseignant·e·s et les élèves intéressé·e·s par le français, la diversité et la variation linguistique. &lt;br&gt;&lt;br&gt; Ce projet est une co-création de Dre Marie-Eve Bouchard et Dre Amanda Cardoso de l’Université de la Colombie-Britannique. Il a été financé par Language Science Institute et Open Educational Resources Fund de l’Université de la Colombie-Britannique.
DOI: 10.14288/1.0449003
title: Lecture d’un passage du roman « La montagne secrète » de Gabrielle Roy

description: Base de données de l’Atlas sonore des variétés de français au Canada. Ces enregistrements sont constitués de lecture d'un passage du roman « La montagne secrète » de Gabrielle Roy. &lt;br&gt;&lt;br&gt; Ce projet vise à valoriser les différents accents de la francophonie canadienne et à les situer géographiquement. Vous pouvez voyager avec votre curseur d’un coin à l’autre du pays en écoutant les différents accents. &lt;br&gt;&lt;br&gt; Un de nos objectifs est aussi d’offrir un outil pédagogique pour les enseignant·e·s et les élèves intéressé·e·s par le français, la diversité et la variation linguistique. &lt;br&gt;&lt;br&gt; Ce projet est une co-création de Dre Marie-Eve Bouchard et Dre Amanda Cardoso de l’Université de la Colombie-Britannique. Il a été financé par Language Science Institute et Open Educational Resources Fund de l’Université de la Colombie-Britannique.
DOI: 10.15468/dl.pc5pkr
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chione gnidia (Broderip & G.B.Sowerby I, 1829)"
 ]
}

 The dataset includes 244 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025538-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.