cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.15dv41nvf
title: Character data for taxa added to phylogenetic analyses in "A new crocodylid from the middle Miocene of Kenya and the timing of crocodylian faunal change in the late Cenozoic of Africa"

description: Brochuchus is a small crocodylid originally based on specimens from the
 early Miocene of Rusinga Island, Lake Victoria, Kenya. Here, we report
 occurrences of Brochuchus from several early and middle Miocene sites.
 Some are from the Lake Victoria region, and others are in the Lake Turkana
 Basin. Specimens from the middle Miocene Maboko locality form the basis of
 a new species, Brochuchus parvidens, which has comparatively smaller
 maxillary alveoli. Because of the smaller alveoli, the teeth appear to be
 more widely spaced in the new species.  We also provide a revised
 diagnosis for Brochuchus and its type species, B. pigotti. A phylogenetic
 analysis supports a close relationship between Brochuchus and tube-snouted
 Euthecodon, but although relationships among crocodylids appear poorly
 resolved in the set of optimal trees, this is because Brochuchus and
 Euthecodon, along with early Miocene “Crocodylus” gariepensis from the
 early Miocene of Namibia, jointly adopt two distinct positions – either
 closely related to the living sharp-nosed crocodile (Mecistops) or to a
 group including the living dwarf crocodiles (Osteolaemus). Character
 support for a close relationship with Mecistops is problematic, and we
 suspect a closer relationship to Osteolaemus will be recovered with
 improved sampling, but the results here are ambiguous. In either case,
 Brochuchus is more closely related to living groups not currently found in
 East Africa. This material helps constrain the timing of crocodylian
 faunal turnover in the East African Rift Valley System, with endemic
 lineages largely being replaced by Crocodylus in the middle or late
 Miocene possibly in response to regional xerification and the replacement
 of continuous rainforest cover with open grasslands and savannas.
description: This is based on the character data set used by Brochu and Storrs
 (<i>Journal of Vertebrate Paleontology</i> 32:587-602,
 2012).
DOI: 10.5061/dryad.5mkkwh739
title: Source matrices used to obtain the trophic and spatial seed dispersal networks

description: 1. Trophic relationships have inherent spatial dimensions associated with
 the sites where species interactions, or their delayed effects, occur.
 Trophic networks among interacting species may thus be coupled with
 spatial networks linking species and habitats whereby animals connect
 patches across the landscape thanks to their high mobility. This trophic
 and spatial duality is especially inherent in processes like seed
 dispersal by animals, where frugivores consume fruit species and deposit
 seeds across habitats. 2. We analysed the frugivore-plant interactions and
 seed deposition patterns of a diverse assemblage of frugivores in a
 heterogeneous landscape in order to determine whether the roles of
 frugivores in network topology are correlated across trophic and spatial
 networks of seed dispersal. 3. We recorded fruit consumption and seed
 deposition by birds and mammals during two years in the Cantabrian Range
 (N Spain). We then constructed two networks of trophic (i.e.
 frugivore-plant) and spatial (i.e. frugivore-seed deposition habitat)
 interactions and estimated the contributions of each frugivore species to
 the network structure in terms of nestedness, modularity and complementary
 specialization. We tested whether the structural role of frugivore species
 was correlated across the trophic and spatial networks, and evaluated the
 influence of each frugivore abundance and body mass in that relationship.
 4. Both the trophic and the spatial networks were modular and specialized.
 Trophic modules matched medium-sized birds with fleshy-fruited trees, and
 small bird and mammals with small-fruit trees and shrubs. Spatial modules
 associated birds with woody canopies, and mammals with open habitats.
 Frugivore species maintained their structural role across the trophic and
 spatial networks of seed dispersal, even after accounting for frugivore
 abundance and body mass. 5. The modularity found in our system points to
 complementarity between birds and mammals in the seed dispersal process, a
 fact that may trigger landscape-scale secondary succession. Our results
 open up the possibility of predicting the consumption pattern of a diverse
 frugivore community, and its ecological consequences, from the uneven
 distribution of fleshy-fruit resources in the landscape.
DOI: 10.5061/dryad.zcrjdfn83
title: Data from: The function and evolution of motile DNA replication systems in ciliates

description: DNA replication is a ubiquitous, complex, and conserved cellular process.
 However, regulation of DNA replication is only understood in a small
 fraction of organisms that poorly represent the diversity of genetic
 systems in nature. Here we used a combination of computational and
 experimental approaches to examine the function and evolution of one such
 system, the replication band (RB) in spirotrich ciliates, which is a
 localized, motile hub that traverses the macronucleus while replicating
 DNA. We show that the RB can take unique physical forms in different
 species, ranging from polar bands to a "replication envelope",
 where replication initiates at the nuclear periphery and advances
 centripetally inwards. Furthermore, we identified genes involved in
 cellular transport, including calcium transporters and cytoskeletal
 regulators, that are associated with the RB and may be involved in its
 function and translocation. These findings reveal the complex evolution
 and diversity of motile DNA replication systems and raise new
 possibilities regarding the regulation of nuclear organization and
 processes.
description: Please see the README file.
DOI: 10.5061/dryad.zkh18937f
title: Risk factors for non-communicable diseases in Bangladesh: Findings of the population-based cross-sectional national survey 2018

description: Objectives: To determine the national prevalence of risk factors
 of non-communicable diseases (NCD) in the adult population of Bangladesh.
 Design: The study was a population-based national cross-sectional study.
 Setting: This study used 496 primary sampling units (PSUs)
 developed by the Bangladesh Bureau of Statistics. The PSUs were equally
 allocated to each division and urban and rural stratum within each
 division. Participants: The participants were adults aged 18-69
 years, who were usual residents of the households for at least six months,
 and stayed the night before the survey. Out of 9900 participants, 8185
 (82.7%) completed STEP-1 and STEP-2, and 7208 took part in STEP-3. Primary
 and secondary outcome: The prevalence of behavioral, physical, and
 biochemical risk factors of NCD. Data were weighted to generate national
 estimates. Results: Tobacco use was significantly (p&lt;0.05)
 higher in the rural (45.2%) than the urban (38.8%) population. Inadequate
 fruit/vegetable intake was significantly (P&lt;0.05) higher in the
 urban (92.1%) than in the rural (88.9%) population. The mean salt intake
 per day was higher in the rural (9.0 gm) than urban (8.9 gm) population.
 Among all, 3.0% had no, 70.9% had 1-2, and 26.2% had ≥3 NCD risk factors.
 The urban population was more likely to have insufficient physical
 activity (AOR: 1.2, 95% CI: 1.2–1.2), obesity (AOR: 1.5, 95% CI: 1.5–1.5),
 hypertension (AOR: 1.3, 95% CI: 1.3–1.3), diabetes (AOR: 1.6, 95% CI:
 1.6–1.6), and hyperglycemia (AOR: 1.1, 95% CI: 1.1–1.1).
 Conclusions: Considering the high prevalence of the
 behavioral, physical, and biochemical risk factors, diverse population and
 high-risk group targeted interventions are essential to combat the rising
 burden of NCDs. 
description: Data were
 collected using a standardized pre-tested questionnaire developed
 considering WHO STEPS questionnaire version 3.2. All the core questions
 along with some selected expanded questions and country-specific questions
 were incorporated. Questionnaire was translated in to Bengali. Validation
 of the translated questionnaire was done by translation and back
 translation. Data collection techniques included face-to-face interview
 (STEP 1), physical measurements (STEP 2) and body fluid (blood and urine)
 collection (STEP 3). Data were collected by android device on spot and
 were transferred into cloud through ODK software on the PDAs.
 Data were
 sent electronically and stored in ONA data base server. Field team daily
 uploaded data on the server and data were downloaded at central office for
 consistency and validity check. Stored data were downloaded into Microsoft
 Excel® format. Each participant had a unique identifier QR-code and
 personal identification number (PID) which were used for merging data for
 steps 1, 2, 3. Data were cleaned and analyzed following WHO STEPS
 recommended guidelines.
DOI: 10.5061/dryad.4j0zpc886
title: Educational Material For: Development of video-based educational materials for kidney-transplant patients

description: Introduction Treatment adherence has been evaluated as a major predictor
 of long-term outcome, and education has been suggested to improve
 adherence. Considering the characteristics of adult learners, it is
 necessary to implement educational programs that meet the needs of
 transplant patients. Multimedia education may be well-suited for this.
 This study aims to develop video education materials in accordance with
 transplant patients’ self-care needs. Methods This study includes a
 literature review and patient interviews aimed at developing video
 education materials for the self-care needs of patients who underwent
 renal transplant surgery at a university hospital in Seoul. Ten patients
 were interviewed about the desired educational content, accessibility, and
 other preferences. After verifying the validity of the data, the video
 scenarios were produced and satisfaction surveys were conducted. Results
 Eleven self-care education items were identified through interviews with
 10 kidney transplant patients. The expert validation of video-based
 educational content result was high (mean CVI = 0.94). The mean score of
 the patients’ satisfaction evaluation of the completed 7-minute video
 instructional materials was also high (4.55 on a 5-point Likert scale).
 Conclusion Findings indicate that the video education materials will meet
 the needs of adult learners and mitigate the limitations of the existing
 education programs by increasing interest and motivation and may
 contribute to increased treatment adherence and ultimately, positively
 effect self-care for new transplant patients.
DOI: 10.5061/dryad.4qrfj6q7p
title: Data from: Early postmortem brain MRI findings in COVID-19 non-survivors

description: Objectives: The severe acute respiratory syndrome coronavirus 2
 (SARS-CoV-2) is considered to have potential neuro-invasiveness that might
 lead to acute brain disorders or contribute to respiratory distress in
 patients with coronavirus disease 2019 (COVID-19). This study investigates
 the occurrence of structural brain abnormalities in non-survivors of
 COVID-19 in a virtopsy framework. Methods: In this prospective,
 monocentric, case series study, consecutive patients who fulfilled the
 following inclusion criteria benefited from an early postmortem structural
 brain MRI: death &lt;24 hours, SARS-CoV-2 detection on nasopharyngeal
 swab specimen, chest computerized tomographic (CT) scan suggestive of
 COVID-19, absence of known focal brain lesion, and MRI
 compatibility.  Results: Among the 62 patients who died from
 COVID-19 from 31/03/2020 to 24/04/2020 at our institution, 19 decedents
 fulfilled the inclusion criteria. Parenchymal brain abnormalities were
 observed in 4 decedents: subcortical micro- and macro-bleeds (2
 decedents), cortico-subcortical edematous changes evocative of posterior
 reversible encephalopathy syndrome (PRES, one decedent), and nonspecific
 deep white matter changes (one decedent). Asymmetric olfactory bulbs were
 found in 4 other decedents without downstream olfactory tract
 abnormalities. No brainstem MRI signal abnormality was observed.
 Conclusions: Postmortem brain MRI demonstrates hemorrhagic and
 PRES-related brain lesions in non-survivors of COVID-19.
 SARS-CoV-2-related olfactory impairment seems to be limited to olfactory
 bulbs. Brainstem MRI findings do not support a brain-related contribution
 to respiratory distress in COVID-19. 
description: Prospective, monocentric, case series study
description: Not applicable
DOI: 10.5061/dryad.8931zcrn6
title: Effects of protected areas on welfare of local households: the case of Maasai Mara National Reserve in Kenya

description: Protected areas are vital for biodiversity conservation although some have
 been criticized for not providing adequate socio-economic benefits to
 local people. However, empirical studies on socio-economic impacts of
 protected areas that control for confounding factors are rare. Here, we
 assessed the potential impacts of Maasai Mara National Reserve in
 South-Western Kenya on welfare (indicated by levels of income,
 consumption, and assets) of, and poverty incidence among 423 randomly
 selected local households. We used descriptive statistics to summarize
 demographic and socio-economic statuses of the households. Then, we
 estimated effects of the protected area on welfare of the households using
 ordinary least - squares regression model and entropy balancing. The
 protected area did not have any significant effect on welfare of, and
 poverty levels among the households. Households that lived within a 5 km
 radius of the protected area boundary incurred significantly higher crop
 destruction and livestock depredation losses than households that lived 5
 - 25 km from the boundary. Nevertheless, majority of the households held
 positive views about the protected area due to direct and indirect
 benefits that they had already gained or expected to gain from it in the
 future. These results suggest that interventions are needed to reduce
 losses caused by wildlife in the protected area and improve its social and
 economic benefits to the local households.
description: We used questionnaire surveys to collect data from households
 that lived adjacent to the protected area (i.e. within a 5 km radius of
 the boundary) and distant households (i.e. lived 5 to 25 km from the
 boundary) in six wards (<i>Naikarra, Angata</i>
 <i>Barikoi, Mara, Lolgorian, Siana</i> and
 <i>Kimintet</i> ) that covered a total of 72 villages.
 Questionnaire for the interviews contained both sets of closed-and
 open-ended questions to enable a comprehensive understanding of
 interviewees’ perceptions of benefits and losses attributable to the
 protected area from multiple perspectives. We used descriptive statistics
 to summarize demographic and socio-economic statuses of the households.
 Then to assess impact of the protected area on welfare of the households,
 we did an empirical analysis in two steps. First, we estimated effect of
 the protected area on welfare using ordinary least - squares regression
 model and entropy balancing. Second, we determined a relationship between
 the protected area and poverty within the households using poverty
 indicators.
DOI: 10.5068/d1x95f
title: Data from: Beyond the limits: identifying the high-frequency detectors in the anuran ear

description: Despite the predominance of low-frequency hearing in anuran amphibians, a
 few frog species have evolved high-frequency communication within certain
 environmental contexts. Huia cavitympanum is the most remarkable anuran
 with regard to upper frequency limits; it is the first frog species known
 to emit exclusively ultrasonic signals. Characteristics of the Distortion
 Product Otoacoustic Emissions from the amphibian papilla and the basilar
 papilla were analysed to gain insight into the structures responsible for
 high-frequency/ultrasound sensitivity. Our results confirm the matching of
 vocalization spectra and inner ear tuning in this species. Compared to
 most anurans, H. cavitympanum has a hyperextended hearing range spanning
 from audible to ultrasonic frequencies, far above the previously
 established “spectral limits” for the amphibian ear. The exceptional
 high-frequency sensitivity in the inner ear of H. cavitympanum illustrates
 the remarkable plasticity of the auditory system and the extent to which
 evolution can modify a sensory system to adapt it to its environment.
DOI: 10.15468/dl.up73hd
title: Occurrence Download

description: A dataset containing 567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Palpigradi"
 ]
}

 The dataset includes 567 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002400-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0zpc866vg
title: X chromosome in aged hematopoietic stem cells (HSC)

description: During X chromosome inactivation (XCI), the inactive X chromosome (Xi) is
 recruited to the nuclear lamina at the periphery of the nucleus. Beside X
 chromosome reactivation resulting in a highly penetrant aging-like
 hematopoietic malignancy, little is known about XCI in aged hematopoietic
 stem cells (HSCs) . Here, we demonstrate that LaminA/C defines a distinct
 repressive nuclear compartment for XCI in young HSCs, and its reduction in
 aged HSCs correlates with an impairment in the overall control of XCI.
 Integrated omics analyses reveal higher variation in gene expression,
 global hypomethylation and significantly increased chromatin accessibility
 on the X chromosome in aged HSCs. In summary, our data support the role of
 LaminA/C in the establishment of a special repressive compartment for XCI
 in HSCs, which is impaired upon aging.
description: Refer to the original manuscript for details about methods for
 each dataset.
description: This dataset contains data related to the manuscript
 “<b>Attrition of X chromosome inactivation in aged hematopoietic
 stem cells by” </b>Grigoryan A. et al, Stem Cell Reports,
 2021. It contains 4 tables with sequencing data results
 related to the associated manuscript:
 <b>Table S1. Related to Figure 1. </b>Chr
 X allele-specific expression (ASE) data for each given cells. p-value
 indicates allele-specific expression significance. A summary of the data
 with statistical analysis is shown at the end of the ASE expression
 dataset. <b>Table S2.
 Related to Figure 2. </b>List of the 5835 Chr X-based differentially
 methylated regions (DMRs) at a q-cutoff value of 0.05. The 113 DMRs with a
 mean difference greater than or equal to 0.1 with at least 3 methylation
 marks representing them are listed at the bottom.
 <b>Table
 S3. Related to Figure 2. </b>ATAC-seq peaks identified along ChrX in
 young and aged HSCs. <b>Table S4.
 Related to Figure 2. </b>Differential accessible regions (DARs)
 (p.value &lt; 0.05) comparing young vs aged HSCs. List of the 1302
 (genome-wide; upper part) and 64 (Chr X-specific; bottom) statistically
 significant DARs. Moreover, it includes and additional excel file, which lists all raw data used to generate the graphs depicted in Figure 1 and Figure 2 of the associated manuscript. In panel 1C, it is reported the mean percentage of young HSCs with localization of Xist close to the tubulin pole. In panel 1E, it is listed the measurements (µm) of the distances between Chr X/Y and tubulin, Chr X/X and tubulin in young male and female HSCs. In panel 1G, it is reported the mean percentage of young HSCs with a polar distribution of Pol II Ser2ph. In panels I and J, it is listed Xist distance (µm) from the edge of the nucleus and Xist volume (µm<sup>3</sup>) measurements. In panel related to Figure 2 A and B, data are <i>Xist </i>relative transcript levels in young and aged female HSCs and ST-HSCs (respectively in this order) measured by RT-PCR. From left to right it is shown the relative expression level, SD and n for each sample set.
DOI: 10.15468/dl.zd9rz8
title: Occurrence Download

description: A dataset containing 42201378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alcippe brunnea, Amadina fasciata, Amandava amandava, Amandava formosa, Amandava subflava, Amblyramphus holosericeus, Ammomanes deserti, Anaplectes rubriceps, Anthus petrosus littoralis, Aplonis panayensis, Arachnothera magna, Babax lanceolatus, Bombycilla japonica, Bucanetes githagineus, Cardinalis cardinalis, Carduelis carduelis, Carpodacus roseus, Carpodacus sibiricus, Cettia cetti, Chaimarrornis leucocephalus, Chalcomitra senegalensis, Chloris ambigua, Chloris chloris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42201378 records from 6647 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002278-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tt4g4d
title: Occurrence Download

description: A dataset containing 49987 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cosmos bipinnatus Cav."
 ]
}

 The dataset includes 49987 records from 548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009957-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qbpke
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.14.29_2",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 103 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009656-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15579585
title: Caring Resonsibilities and Educational Trayectories
DOI: 10.5281/zenodo.15579586
title: Caring Resonsibilities and Educational Trayectories
DOI: 10.15468/dl.zwcqcq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Paguma larvata (C.E.H.Smith, 1827))",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016138-250525065834625/datasets/export for details.