cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.871524.v1
title: TF list

description: A list of putative transcription factors as defined by GO annotation. Go annotations that were chosen include transcriptional regulation, DNA binding, and co-TF.
DOI: 10.6084/m9.figshare.871530.v1
title: Refleksje na temat pracy „Ryzyko przedsiębiorstwa wynikające z ekonomicznej kondycji na przykładzie polskich instytucji” autorstwa: M.Bułka,E.Brylak,R.Koziarski

description: Niniejsza publikacja dotyczy oceny oraz refleksji pracy dotyczącej ryzyka przedsiębiorstwa wynikającego z ekonomicznej kondycji na przykładzie polskich instytucji autorstwa M.Bułki, E.Brylak oraz R.Koziarskiego. Nadrzędnym celem jest weryfikacja poprawności analizy i obliczeń związanych przede wszystkim ze wskaźnikiem PHI Zietlowa. Oceniana będzie także forma i estetyka pracy, a także zachowanie określonych standardów związanych z publikowanymi pracami. Summary:<br>This publication refers to the evaluation and reflection work on the company's risk arising from the economic condition of the example of Polish institutions by M.Bułki, E.Brylak and R.Koziarskiego. The overall objective is to verify the correctness of the analysis and calculations associated primarily with the indicator PHI Zietlowa. The evaluation will assess the form and aesthetics of the work, as well as the behavior of specific standards related to the published work.
DOI: 10.6084/m9.figshare.871521
title: Interaction Network for Acute Myeloid Leukemia (AML) using The Cancer Genome Atlas (TCGA) database

description: RNA-seq data was downloaded from the TCGA website (Nov 14, 2013) and includes 128 DESEq normalized samples. The data was derived from primary samples of sorted whole blood obtained from AML patients. 100 bootstraps of ARACNe were run using adaptive partitioning, p-value cut off of 1e-8, and full DPI. The regulator list that was used includes all the genes with GO annotation of transcriptional regulation or DNA binding (Shimoni, Yishai; Alvarez, Mariano (2013): TF list. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.871524)
DOI: 10.6084/m9.figshare.871521.v2
title: The Cancer Genome Atlas (TCGA) Acute Myeloid Leukemia (AML) interactome

description: RNA-seq data was downloaded from the TCGA website (Nov 14, 2013) and includes 128 DESEq normalized samples. The data was derived from primary samples of sorted whole blood obtained from AML patients. 100 bootstraps of ARACNe were run using adaptive partitioning, p-value cut off of 1e-8, and full DPI. The regulator list that was used includes all the genes with GO annotation of transcriptional regulation or DNA binding (Shimoni, Yishai; Alvarez, Mariano (2013): TF list. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.871524)
DOI: 10.6084/m9.figshare.871521.v3
title: Interacttion Network for The Cancer Genome Atlas (TCGA)

description: RNA-seq data was downloaded from the TCGA website (Nov 14, 2013) and includes 128 DESEq normalized samples. The data was derived from primary samples of sorted whole blood obtained from AML patients. 100 bootstraps of ARACNe were run using adaptive partitioning, p-value cut off of 1e-8, and full DPI. The regulator list that was used includes all the genes with GO annotation of transcriptional regulation or DNA binding (Shimoni, Yishai; Alvarez, Mariano (2013): TF list. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.871524)
DOI: 10.6084/m9.figshare.871521.v4
title: Interacttion Network for Acute Myeloid Leukemia (AML) using The Cancer Genome Atlas (TCGA) database

description: RNA-seq data was downloaded from the TCGA website (Nov 14, 2013) and includes 128 DESEq normalized samples. The data was derived from primary samples of sorted whole blood obtained from AML patients. 100 bootstraps of ARACNe were run using adaptive partitioning, p-value cut off of 1e-8, and full DPI. The regulator list that was used includes all the genes with GO annotation of transcriptional regulation or DNA binding (Shimoni, Yishai; Alvarez, Mariano (2013): TF list. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.871524)
DOI: 10.6084/m9.figshare.871434
title: Refleksje na temat pracy ANALIZA FINANSOWA EKONOMICZNEJ KONDYCJI NA PRZYKŁADZIE POLSKICH INSTYTUCJI autorstwa D. Kasprzak, D. Świrk, M. Wiącek

description: Recenzowana praca opiera się na analizie modelu Zietlowa, który za pomocą wskaźnika FHI (financial health index) bada kondycję finansową firmy, opierająca się o analizę płynności, elastyczności finansowej oraz wypłacalności. Autorzy ukazali owe zjawiska ekonomiczne na przykładzie polskich przedsiębiorstw należących do różnych branż: przedsiębiorstwa finansowego i niefinansowego oraz organizacji non-profit.
DOI: 10.6084/m9.figshare.871454
title: Code IR

description: Code for our assignment for the Information Retrieval course. Written in JSON, used in the plugin Sense, which interacts with the Elastic Search engine.
DOI: 10.6084/m9.figshare.871434.v1
title: Refleksje na temat pracy ANALIZA FINANSOWA EKONOMICZNEJ KONDYCJI NA PRZYKŁADZIE POLSKICH INSTYTUCJI autorstwa D. Kasprzak, D. Świrk, M. Wiącek

description: Recenzowana praca opiera się na analizie modelu Zietlowa, który za pomocą wskaźnika FHI (financial health index) bada kondycję finansową firmy, opierająca się o analizę płynności, elastyczności finansowej oraz wypłacalności. Autorzy ukazali owe zjawiska ekonomiczne na przykładzie polskich przedsiębiorstw należących do różnych branż: przedsiębiorstwa finansowego i niefinansowego oraz organizacji non-profit.
DOI: 10.6084/m9.figshare.871455
title: Results IR

description: Results related to our paper for the course Information Retrieval.
DOI: 10.6084/m9.figshare.871417
title: upload tests

description: Comparison of VEGI CNSs with MF CNSs
DOI: 10.6084/m9.figshare.871430
title: SNPsea: an algorithm to identify cell types, tissues, and pathways affected by risk loci

description: Updated May 20, 2014. This archive contains data for: Slowikowski, et al. <strong>SNPsea: an algorithm to identify cell types, tissues, and pathways that affect risk loci.</strong> Bioinformatics (2014). doi:10.1093/bioinformatics/btu326 Please see the SNPsea documentation for more details: http://snpsea.readthedocs.org/en/latest/data.html CONTENTS GWAS SNPs on hg19 with P &lt;= 5-e8 extracted from tables in pdfs. <strong>Celiac_disease-Trynka2011-35_SNPs.gwas</strong><br><strong>HDL_cholesterol-Teslovich2010-46_SNPs.gwas</strong><br><strong>Multiple_sclerosis-IMSGC-51_SNPs.gwas</strong><br><strong>Red_blood_cell_count-Harst2012-45_SNPs.gwas</strong> <strong></strong><strong> </strong> <strong>GeneAtlas2004.gct.gz</strong><br><em>- Gene Atlas 2004 gene expression matrix (Affymetrix)</em> <strong>ImmGen2012.gct.gz</strong><br><em>- ImmGen 2012 gene expression matrix (Affymetrix)</em> <strong>FANTOM2014.gct.gz</strong><br><em>- RIKEN FANTOM5 gene expression matrix (CAGE)</em> <strong>GO2013.gct.gz</strong><br><em>- Gene Ontology 2013 gene annotation matrix (binary annotations)</em> <em><br></em> <strong>NCBIgenes2013.bed.gz</strong><br><em>- Homo sapiens NCBI gene intervals</em> <strong>Lango2010.txt.gz</strong><br><em>- LD-pruned SNPs</em> <strong>TGP2011.bed.gz</strong><br><em>- 1000 Genomes Project SNP linkage disequilibrium (LD) intervals</em>
DOI: 10.6084/m9.figshare.871431
title: Refleksje na temat pracy ANALIZA FINANSOWA EKONOMICZNEJ KONDYCJI NA PRZYKŁADZIE POLSKICH INSTYTUCJI autorstwa D. Kasprzak, D. Świrk, M. Wiącek

description: Recenzji została poddana praca “Analiza finansowa ekonomicznej kondycji na przykładzie polskich instytucji”, której celem było zaprezentowanie wyników badań przeprowadzonej analizy trzech wybranych instytucji reprezentujących różne branże gospodarki. Analiza ta została przeprowadzona przy użyciu Indeksu Kondycji Finansowej.
DOI: 10.6084/m9.figshare.871431.v1
title: Refleksje na temat pracy ANALIZA FINANSOWA EKONOMICZNEJ KONDYCJI NA PRZYKŁADZIE POLSKICH INSTYTUCJI autorstwa D. Kasprzak, D. Świrk, M. Wiącek

description: Recenzji została poddana praca “Analiza finansowa ekonomicznej kondycji na przykładzie polskich instytucji”, której celem było zaprezentowanie wyników badań przeprowadzonej analizy trzech wybranych instytucji reprezentujących różne branże gospodarki. Analiza ta została przeprowadzona przy użyciu Indeksu Kondycji Finansowej.
DOI: 10.6084/m9.figshare.871455.v1
title: Results IR

description: Results related to our paper for the course Information Retrieval.
DOI: 10.6084/m9.figshare.871407
title: Risk of the firm as result of economic health - Polish entities case.

description: This paper analyzes the risk of the company resulting from the economic condition of the example of Polish companies in the three sectors of the financial industry, nonprofit organizations and from outside the nonprofit sector and financial sector companies. This analysis is done on the basis of financial stability model developed by J. Zieltowa at work "A Financial Health Index for Achieving Financial Sustainability". Job calculated ratios resulting from this model and compares them between these units from each sector. The comparison is made using parameters such as asset volatility index, the ratio of cash reserves supplied and the target flow rate sensor or modified cash. On their basis, it can reveal very stable areas of the organization and make improve their financial condition.
DOI: 10.6084/m9.figshare.871407.v1
title: Risk of the firm as result of economic health - Polish entities case.

description: This paper analyzes the risk of the company resulting from the economic condition of the example of Polish companies in the three sectors of the financial industry, nonprofit organizations and from outside the nonprofit sector and financial sector companies. This analysis is done on the basis of financial stability model developed by J. Zieltowa at work "A Financial Health Index for Achieving Financial Sustainability". Job calculated ratios resulting from this model and compares them between these units from each sector. The comparison is made using parameters such as asset volatility index, the ratio of cash reserves supplied and the target flow rate sensor or modified cash. On their basis, it can reveal very stable areas of the organization and make improve their financial condition.
DOI: 10.6084/m9.figshare.871417.v1
title: VEGI MF CNS comparison

description: Comparison of VEGI CNSs with MF CNSs
DOI: 10.6084/m9.figshare.871417.v3
title: upload tests

description: Comparison of VEGI CNSs with MF CNSs
DOI: 10.6084/m9.figshare.871405
title: Information Retrieval

description: All the files related to our assignments for the course Information Retrieval.
DOI: 10.6084/m9.figshare.871417.v2
title: VEGI MF CNS comparison

description: Comparison of VEGI CNSs with MF CNSs
DOI: 10.6084/m9.figshare.871403
title: Merged results Assignment 1

description: The merged results comparing Google to the VU search engine in terms of relevancy and performance.
DOI: 10.6084/m9.figshare.871430.v1
title: SNPsea: test trait-associated loci for enrichment of condition-specificity of gene measurements or binary annotations

description: <strong>GO2013.gct.gz</strong> A GCT formatted gene matrix with 1s and 0s indicating presence or absence of genes in <strong>Gene Ontology</strong> annotations. <strong>ImmGen2012.gct.gz</strong> Gene expression data for 249 blood cell types from the Immunological Genome Project <strong>GSE15907</strong>. Replicates for each cell type profile were averaged. For each gene, the single probe with the largest minimum was selected. <strong>LDL_Teslovich2010.txt</strong> 37 SNPs taken from: Teslovich TM, Musunuru K, Smith AV, et al. Biological, clinical and population relevance of 95 loci for blood lipids. Nature. 2010;466(7307):707-13. <strong>Lango2010.txt.gz</strong> A list of SNPs that were pruned by linkage disequilibrium that span the whole genome. SNPsea samples these null SNP sets matched on the number of genes in the user's SNP set. Lango allen H, Estrada K, Lettre G, et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature. 2010;467(7317):832-8. <strong>NCBIgenes2013.bed.gz</strong> Gene coordinates were obtained from the NCBI ftp site. The coordinates I provide are a subset of those listed in <strong>gene2refseq.gz</strong>. <strong>NovartisGeneAtlas2004.gct.gz</strong> Gene expression data for 79 human tissues from <strong>GSE1133</strong>. Replicates for each tissue profile were averaged. For each gene, the single probe with the largest minimum was selected. Su AI et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A, 2004 Apr 9;101(16):6062-7 <strong><br></strong> <strong>TGP2011.bed.gz</strong> Linkage intervals for a filtered set of SNPs from the <strong>1000 Genomes Project</strong> Phase 1 (May 21, 2011). SNP genotypes were obtained from the <strong>BEAGLE</strong> release v3 website and processed to create linkage intervals for each SNP. The linkage intervals were extended to the nearest <strong>HapMap</strong> recombination hotspot with &gt;3 cM/Mb recombination rate.
DOI: 10.6084/m9.figshare.871403.v1
title: Merged results Assignment 1

description: The merged results comparing Google to the VU search engine in terms of relevancy and performance.
DOI: 10.6084/m9.figshare.871405.v2
title: Information Retrieval

description: All the files related to our assignments for the course Information Retrieval.
DOI: 10.6084/m9.figshare.871405.v1
title: Information Retrieval

description: All the files related to our assignments for the course Information Retrieval.
DOI: 10.6084/m9.figshare.871430.v2
title: SNPsea: an algorithm to identify cell types, tissues, and pathways affected by risk loci

description: <strong>GO2013.gct.gz</strong> A GCT formatted gene matrix with 1s and 0s indicating presence or absence of genes in <strong>Gene Ontology</strong> annotations. <strong>ImmGen2012.gct.gz</strong> Gene expression data for 249 blood cell types from the Immunological Genome Project <strong>GSE15907</strong>. Replicates for each cell type profile were averaged. For each gene, the single probe with the largest minimum was selected. <strong>LDL_Teslovich2010.txt</strong> 37 SNPs taken from: Teslovich TM, Musunuru K, Smith AV, et al. Biological, clinical and population relevance of 95 loci for blood lipids. Nature. 2010;466(7307):707-13. <strong>Lango2010.txt.gz</strong> A list of SNPs that were pruned by linkage disequilibrium that span the whole genome. SNPsea samples these null SNP sets matched on the number of genes in the user's SNP set. Lango allen H, Estrada K, Lettre G, et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature. 2010;467(7317):832-8. <strong>NCBIgenes2013.bed.gz</strong> Gene coordinates were obtained from the NCBI ftp site. The coordinates I provide are a subset of those listed in <strong>gene2refseq.gz</strong>. <strong>NovartisGeneAtlas2004.gct.gz</strong> Gene expression data for 79 human tissues from <strong>GSE1133</strong>. Replicates for each tissue profile were averaged. For each gene, the single probe with the largest minimum was selected. Su AI et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A, 2004 Apr 9;101(16):6062-7 <strong><br></strong> <strong>TGP2011.bed.gz</strong> Linkage intervals for a filtered set of SNPs from the <strong>1000 Genomes Project</strong> Phase 1 (May 21, 2011). SNP genotypes were obtained from the <strong>BEAGLE</strong> release v3 website and processed to create linkage intervals for each SNP. The linkage intervals were extended to the nearest <strong>HapMap</strong> recombination hotspot with &gt;3 cM/Mb recombination rate.
DOI: 10.6084/m9.figshare.871369
title: Gaussian Job Archive for C6H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.871394
title: NASA Funding Analysis

description: A very simple analysis of the NASA funding data on Wikipedia.
DOI: 10.6084/m9.figshare.871368
title: Gaussian Job Archive for C5H7B

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.871369.v1
title: Gaussian Job Archive for C6H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.871394.v1
title: NASA Funding Analysis

description: A very simple analysis of the NASA funding data on Wikipedia.
DOI: 10.6084/m9.figshare.871368.v1
title: Gaussian Job Archive for C5H7B

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.870508
title: Diversity, Databases, and Discoverability

description: Keynote presentation for the Des Moines University 2013 Research Symposium (http://www.dmu.edu/event/dmu-research-symposium/). Includes discussion of persistent identifiers (ORCID, ME, DOI, ISNI) with a focus on how individuals can take action to make themselves more discoverable. Case study is a presnetation of the findings of Ginther et al. (2011) on differences in NIH R01 award probability by race and ethncity and how evaluation studies rely on accurate linked data.
DOI: 10.6084/m9.figshare.870498
title: Gaussian Job Archive for C6H5Li2(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.870508.v1
title: Diversity, Databases, and Discoverability

description: Keynote presentation for the Des Moines University 2013 Research Symposium (http://www.dmu.edu/event/dmu-research-symposium/). Includes discussion of persistent identifiers (ORCID, ME, DOI, ISNI) with a focus on how individuals can take action to make themselves more discoverable. Case study is a presnetation of the findings of Ginther et al. (2011) on differences in NIH R01 award probability by race and ethncity and how evaluation studies rely on accurate linked data.
DOI: 10.6084/m9.figshare.870474
title: Antioxidant activity analysis

description: What is the activity of antioxidants (present in the OpenPHACTS database) against different free radicals (e.g. a carcinogenic radical)?
DOI: 10.6084/m9.figshare.870475
title: Ryzyko przedsiębiorstwa wynikające z ekonomicznej kondycji na przykładzie polskich instytucji (Risk of the firm as result of economic health - Polish entities case)

description: W niniejszej pracy, autorzy skoncentrowali się na wyliczeniu oraz analizie wskaźników umożliwiających ocenę kondycji finansowej wybranych przedsiębiorstw oraz jednostki pożytku publicznego. Dane wykorzystywane podczas wyliczeń zaczerpnięto ze sprawozdań finansowych publikowanych przez wybrane jednostki. W pracy dokonano niezbędnych obliczeń docelowo uzyskując miarę PHI Zietlowa. In this study, the authors focused on the calculation and analysis of indicators to assess the financial condition of the selected companies and public benefit entities. The data used in the calculations are taken from the financial statements published by the selected units. The paper necessary calculations ultimately give a PHI measure
DOI: 10.6084/m9.figshare.870475.v1
title: Ryzyko przedsiębiorstwa wynikające z ekonomicznej kondycji na przykładzie polskich instytucji (Risk of the firm as result of economic health - Polish entities case)

description: W niniejszej pracy, autorzy skoncentrowali się na wyliczeniu oraz analizie wskaźników umożliwiających ocenę kondycji finansowej wybranych przedsiębiorstw oraz jednostki pożytku publicznego. Dane wykorzystywane podczas wyliczeń zaczerpnięto ze sprawozdań finansowych publikowanych przez wybrane jednostki. W pracy dokonano niezbędnych obliczeń docelowo uzyskując miarę PHI Zietlowa. In this study, the authors focused on the calculation and analysis of indicators to assess the financial condition of the selected companies and public benefit entities. The data used in the calculations are taken from the financial statements published by the selected units. The paper necessary calculations ultimately give a PHI measure
DOI: 10.6084/m9.figshare.870460
title: reposnse to simple stimulus , awake = 0.5

description: Neuro Reponse to simple thalamic stimulus + additional current to somas in layer 5 pyramids (0.5 nA) and layer 6 pyramids (0.375 nA) Neuron_out.dat - spikes time in Neuron version with normal GABA conductance Neuron_out_0_06.dat - spikes time in Neuron version with smaller GABA conductance (6 %) out.dat - data for spikes time in Fortran version with normal GABA conductance, out_0_06_gaba.dat - data for spikes time in Fortran version with smaller GABA conductance (6 %) in Fortran version groucho.f like in http://figshare.com/articles/reposnse_to_simple_stimulus_awake_1/868905 only different values of curr_tuftIB (1,L) , curr_tuftRS (1,L), curr_nontuftRS (1,L) in lines 4139, 4147, 4154 In Neuron version files like in http://figshare.com/articles/reposnse_to_simple_stimulus_awake_1/868905 only awake = 0.5 in init.hoc
DOI: 10.6084/m9.figshare.870469
title: Reponse to simple thalamic stimulus

description: out_Neuron.dat - spikes time in Neuron version with normal GABA conductance Neuron_out_0_06.dat - spikes time in Neuron version with smaller GABA conductance (6 %) out.dat - data for spikes time in Fortran version with normal GABA conductance, out_0_06_gaba.dat - data for spikes time in Fortran version with smaller GABA conductance (6 %) in Fortran version groucho.f like in http://figshare.com/articles/reposnse_to_simple_stimulus_awake_1/868905 only different values of curr_tuftIB (1,L) , curr_tuftRS (1,L), curr_nontuftRS (1,L) in lines 4139, 4147, 4154 In Neuron version files like in http://figshare.com/articles/reposnse_to_simple_stimulus_awake_1/868905 only awake = 0 in init.hoc
DOI: 10.6084/m9.figshare.870470
title: LC-MS/MS spectral information

description: Protein pilot (.group) files containing spectral data acquired with the 6 protocols tested in this study. Data files contain both full technical replicates (= protocol replicates) for evaluation of the protocol performance, and LC-Ms/MS replicates (= injection replicates) for evaluating the performance of the LC-MS/MS platform and acquisition strategy"
DOI: 10.6084/m9.figshare.870473.v1
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.870474.v1
title: Antioxidant activity analysis

description: What is the activity of antioxidants (present in the OpenPHACTS database) against different free radicals (e.g. a carcinogenic radical)?
DOI: 10.6084/m9.figshare.870498.v1
title: Gaussian Job Archive for C6H5Li2(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.870448
title: Movies 1 and 2

description: GST (Supp movie 1)<br>Movie was created by assembling together phase contrast images captured using the Cell-IQ controlled environmental chamber (CM technologies) every 15 minutes for 16 hours. To obtain a broader view of the well, each picture is a collage of 4 different pictures taken on adjacent positions. Scale bar is 500 um. S3ED (Supp movie 2)<br>Movie was created by assembling together phase contrast images captured using the Cell-IQ controlled environmental chamber (CM technologies) every 15 minutes for 16 hours. To obtain a broader view of the well, each picture is a collage of 4 different pictures taken on adjacent positions. Scale bar is 500 um.