cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zgfygz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Mertensophryne nyikae (Loveridge, 1953)"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042131-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qre17n
title: Occurrence Download

description: A dataset containing 42898 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Togo"
 ]
}

 The dataset includes 42898 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015325-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rzzdf
title: Occurrence Download

description: A dataset containing 169437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BGD",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 169437 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313484-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63taae
title: Occurrence Download

description: A dataset containing 43013 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Gambusia affinis (Baird & Girard, 1853)"
 ]
}

 The dataset includes 43013 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037665-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzdqs7
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guarea corticosa Al.Rodr."
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165773-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je8h9j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron bonvalotii Franch."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016576-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmoskc
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus castanea Née",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 139 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015322-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ml94a9
title: Occurrence Download

description: A dataset containing 7780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphastos sulfuratus R.Lesson, 1830",
 "Country is Costa Rica"
 ]
}

 The dataset includes 7780 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015322-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz9sd9
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Amentotaxus argotaenia (Hance) Pilg."
 ]
}

 The dataset includes 192 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313496-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhp8t2
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Petropedetes cameronensis Reichenow, 1874"
 ]
}

 The dataset includes 35 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042155-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.td4icq
title: Occurrence Download

description: A dataset containing 811 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachycephalus Fitzinger, 1826"
 ]
}

 The dataset includes 811 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015322-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tk873r
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Paraguay",
 "Country is Argentina"
 ]
 },
 "TaxonKey is Chloroleucon tortum (Mart.) Pittier"
 ]
}

 The dataset includes 255 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298357-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vu3fh
title: Occurrence Download

description: A dataset containing 481 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((126 73.16342, 128.9588 73.16342, 128.9588 73.5664, 126 73.5664, 126 73.16342))"
 ]
}

 The dataset includes 481 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042171-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfbdb2
title: Occurrence Download

description: A dataset containing 606 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes flaccida Shuttlew. ex A.Braun"
 ]
}

 The dataset includes 606 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165774-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgbjg8
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus castanea Née",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 139 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015323-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs7ykw
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((108.20025 27.09297,105.94851 25.82519,102.05055 26.20363,98.22828 26.73345,96.31714 24.14111,98.19043 21.98399,100.17726 17.17776,104.20767 16.15597,108.20025 11.42543,110.206 12.95813,111.70084 18.54016,111.09534 21.52986,108.55977 22.77872,111.05749 24.65201,111.77654 26.44962,108.20025 27.09297))",
 "OccurrenceStatus is Present",
 "TaxonKey is Calocedrus Kurz"
 ]
}

 The dataset includes 113 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043216-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcqx7w
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyphlebium borbonicum (Bosch) Ebihara & Dubuisson"
 ]
}

 The dataset includes 315 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298362-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3y9pi
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyroderus scutatus granadensis (Lafresnaye, 1846)"
 ]
}

 The dataset includes 102 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015323-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5q4v3c
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Tsuga tchekiangensis Flous"
 ]
}

 The dataset includes 31 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313491-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.na88ky
title: Occurrence Download

description: A dataset containing 55424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blitum bonus-henricus (L.) Rchb."
 ]
}

 The dataset includes 55424 records from 581 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043220-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxjr64
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harpa gracilis Broderip & G.B.Sowerby I, 1829"
 ]
}

 The dataset includes 70 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132269-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10979129
title: The effect of presence and absence of DNA repair genes on the rate and pattern of mutation in bacteria

description: This repository contains the code, data, and outputs used in the manuscript "The effect of presence and absence of DNA repair genes on the rate and pattern of mutation in bacteria".



Script.py: This is a Python script for estimating the number of polymorphisms and mutation rates of bacterial clusters of orthologous genes found in ATGC_data.zip. It produces individual strain outputs to Polymorphism_Results/ and Rate_Results/ directories.

ATGC_data.zip: This is a data set of bacterial clusters of orthologous genes downloaded from the ATGC database by Kristensen et al. (2017). The fasta files are utilised by Script.py and should be extracted to the same working directory, under ATGC_data/.

mutation_rate_data.csv: This file contains the outputs of Script.py merged into a single file, alongside additional information regarding the presence and absence of particular repair genes, and the calculation of overall mutation rate and Watterson's corrected mutation rate.

Phylogenetic_Comparisons.xlsx: This file contains the averages of overall mutation rate, transition/transversion ratio, and GC-AT bias, for 50 phylogenetic comparisons under presence and absence of repair enzymes.
DOI: 10.5281/zenodo.10979130
title: The effect of presence and absence of DNA repair genes on the rate and pattern of mutation in bacteria

description: This repository contains the code, data, and outputs used in the manuscript "The effect of presence and absence of DNA repair genes on the rate and pattern of mutation in bacteria".



Script.py: This is a Python script for estimating the number of polymorphisms and mutation rates of bacterial clusters of orthologous genes found in ATGC_data.zip. It produces individual strain outputs to Polymorphism_Results/ and Rate_Results/ directories.

ATGC_data.zip: This is a data set of bacterial clusters of orthologous genes downloaded from the ATGC database by Kristensen et al. (2017). The fasta files are utilised by Script.py and should be extracted to the same working directory, under ATGC_data/.

mutation_rate_data.csv: This file contains the outputs of Script.py merged into a single file, alongside additional information regarding the presence and absence of particular repair genes, and the calculation of overall mutation rate and Watterson's corrected mutation rate.

Phylogenetic_Comparisons.xlsx: This file contains the averages of overall mutation rate, transition/transversion ratio, and GC-AT bias, for 50 phylogenetic comparisons under presence and absence of repair enzymes.
DOI: 10.15468/dl.jxa4zd
title: Occurrence Download

description: A dataset containing 1516 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence",
 "BasisOfRecord is Observation"
 ]
 },
 "TaxonKey is Gazania linearis (Thunb.) Druce"
 ]
}

 The dataset includes 1516 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0387650-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29d7fu
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alsophila gigantea Wall., 1829",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 37 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093000-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47vc5y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "EventDate is 2022-01-01,2022-12-31"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115757-230530130749713/datasets/export for details.
DOI: 10.15468/dl.u2vzn3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scilla pneumonanthe Speta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062854-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3heben
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is University of Texas, Biodiversity Center, Entomology Collection (UTIC)",
 "TaxonKey is Gibbobruchus mimus (Say, 1831)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0430190-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2uasp
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Benzingia estradae (Dodson) Dodson"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093025-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bt5uq
title: Occurrence Download

description: A dataset containing 2672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scilla sardensis (Whittall ex Barr & Sugden) Speta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2672 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062862-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzvraa
title: Occurrence Download

description: A dataset containing 48744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Dryopteris affinis (Lowe) Fraser-Jenk."
 ]
}

 The dataset includes 48744 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093024-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kn7na
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((12.98349 55.59359,12.98356 55.59186,12.98398 55.59187,12.98713 55.59341,12.98718 55.59356,12.98349 55.59359))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258556-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhm7ge
title: Occurrence Download

description: A dataset containing 58739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ailuropoda melanoleuca (David, 1869), Melursus ursinus (Shaw, 1791), Tremarctos ornatus (F.G.Cuvier, 1825), Ursus americanus Pallas, 1780, Ursus arctos Linnaeus, 1758, Ursus maritimus Phipps, 1774, Ursus thibetanus G)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 58739 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115764-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn4wr3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saxifraga bijiangensis H.Chuang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115763-230530130749713/datasets/export for details.
DOI: 10.15468/dl.zxvh37
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bathykurila Pettibone, 1976"
 ]
}

 The dataset includes 122 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246789-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sz3tt4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thlaspi leblebicii Gemici & Görk"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013515-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5ket7
title: Occurrence Download

description: A dataset containing 111608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Noctua comes Hübner)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 111608 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246770-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2y7ms
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Telmatochromis vittatus Boulenger, 1898)"
 ]
}

 The dataset includes 221 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012106-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utuzj3
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cryphiops villalobosi Villalobos Hiriart, Nates Rodriguez & Cantú Diaz Barriga, 1989)"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012107-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.