cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gf1vhhmnt
title: Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019

description: An. stephensi, an efficient malaria vector in parts of Asia and Africa,
 was observed in 75.3% of water sources surveyed, and contributed to 80.9%
 of wild-caught Anopheles mosquitoes in Awash Sebat Kilo,
 Ethiopia. High susceptibility of these mosquitoes to Plasmodium
 falciparum and vivax infection presents a challenge for malaria control in
 the Horn of Africa. This study was conducted in Awash Sebat Kilo,
 Ethiopia, an area of perennial malaria transmission, from April to
 September 2019. We examined aquatic habitats for immature-stage Anopheles
 mosquitoes by standard dipping (10x/site) for 5 consecutive days. We
 assessed mosquito resting, feeding, and host-seeking behavior.
description: We
 assessed mosquito resting, feeding, and host-seeking behavior by 5
 methods: CDC miniature light traps model 512 (John W. Hock Company,
 https://www.johnwhock.com), human landing catches, pyrethrum spray sheet
 collection, aspiration from animal shelters, and cattle-baited traps
 (<i>5</i>). We identified adult mosquitoes by using standard
 keys and confirmed identification by targeted sequencing of nuclear
 internal transcribed spacer 2 (ITS2) and mitochondrial cytochrome oxidase
 subunit 1 gene (COI) (<i>6</i>). <i>An. stephensi
 </i>mosquito DNA sequences were compared with publicly available
 libraries to generate clade topologies (<i>7)</i>. We
 determined mosquito blood meal sources by using multiplex PCR targeting
 cytochrome b (<i>8</i>) and infection status by using 18S
 rRNA-based nested PCR (<i>9</i>). Adult
 <i>An. stephensi </i>mosquitoes reared from immatures from
 local water sources and a colony of <i>An. arabiensis
 </i>mosquitoes (~120 each) were fed in the dark for 30 min on
 membrane feeders containing fresh blood from patients with
 microscopy-confirmed <i>P. vivax </i>and <i>P.
 falciparum </i>mono- and mixed-species infections that were
 attending Adama malaria clinic (<i>10</i>). Unfed and
 partially fed mosquitoes were removed; fully engorged mosquitoes were
 maintained on sugar solution. At 7 or 12 days after feeding, mosquitoes
 were dissected and their midguts were examined for oocysts and salivary
 glands for sporozoites. To compare infection status between <i>An.
 arabiensis </i>and <i>An. stephensi </i>mosquitoes, we
 performed logistic regression. We used individual mosquito data and a
 fixed effect for each patient to account for correlations between mosquito
 observations from the same donor. Bland-Altmann plots were generated for
 differences in infectivity between mosquito sources by using the Pitman
 test of difference in variance. For analyses, we used STATA version 13
 (StataCorp., https://www.stata.com/company) and GraphPad Prism 5.3
 (GraphPad Software Inc., https://www.graphpad.com).
description: The supplemental section of the work describes the data included
 here and how it was collected.
DOI: 10.5061/dryad.xksn02vf6
title: Match and mismatch: Integrating consumptive effects of predators, prey traits, and habitat selection in colonizing aquatic insects

description: Predators are a particularly critical component of habitat quality, as
 they affect survival, morphology, behavior, population size, and community
 structure through both consumptive and non-consumptive effects.
 Non-consumptive effects can often exceed consumptive effects, but their
 relative importance is undetermined in many systems. Our objective was to
 determine the consumptive and non-consumptive effects of a predaceous
 aquatic insect, Notonecta irrorata, on colonizing aquatic beetles. We
 tested how N. irrorata affected survival and habitat selection of
 colonizing aquatic beetles, how beetle traits contributed to their
 vulnerability to predation by N. irrorata, and how combined consumptive
 and non-consumptive effects affected populations and community structure.
 Predation vulnerabilities ranged from 0–95% mortality, with size,
 swimming, and exoskeleton traits generating species-specific
 vulnerabilities. Habitat selection ranged from predator avoidance to
 preferentially colonizing predator patches. Attraction of Dytiscidae to N.
 irrorata may be a natural ecological trap given similar cues produced by
 these taxa. Hence, species-specific habitat selection by prey can be
 either predator-avoidance responses that reduce consumptive effects, or
 responses that magnify predator effects. Notonecta irrorata had both
 strong consumptive and non-consumptive effects on populations and
 communities, while combined effects predicted even more distinct
 communities and populations across patches with or without predators. Our
 results illustrate that an aquatic invertebrate predator can have
 functionally-unique consumptive effects on prey, attracting and repelling
 prey, while prey have functionally-unique responses to predators.
 Determining species-specific consumptive and non-consumptive effects is
 important to understand patterns of species diversity across landscapes.
description: See README file.
DOI: 10.5061/dryad.rfj6q578r
title: Adaptation to herbivory and detritivory drives the convergent evolution of large abdominal cavities in a diverse freshwater fish radiation (Otophysi: Characiformes)

description: Convergent evolution is often interpreted as evidence of natural selection
 favoring an optimal phenotype during adaptation. Morphological convergence
 is frequently found among lineages that converge on diet, but most studies
 have focused on morphological traits that relate exclusively to food
 handling and processing. In vertebrates, there is a strong inverse
 relationship between intestine length and trophic level.
  However, little is known about whether adaptation to a low
 trophic level influences the evolution of abdominal cavities that can
 accommodate larger intestines. Here, I reconstruct the evolutionary
 history of trophic ecology and examine abdominal cavity shape across 157
 species of the fish order Characiformes to determine whether adaptation to
 an herbivorous-detritivorous diet drives convergent evolution of large
 abdominal cavities. Herbivorous-detritivorous species evolved
 significantly larger abdominal cavities than other trophic groups and
 repeatedly converged on a similar abdominal cavity morphology. Other
 trophic groups evolved abdominal cavity morphologies either stochastically
 or by selective pressures from an untested ecological character. These
 findings demonstrate that the selective demands of a larger intestinal
 tract promote the repeated convergence of a large abdominal cavity within
 herbivorous-detritivorous characiform fishes, while allowing other
 lineages to evolve randomly or adapt in response to other selection
 pressures, contributing to the overall body shape diversity of the order.
DOI: 10.5061/dryad.gqnk98sm4
title: Data from: Cholesterol and ORP1L dependent clustering of dynein on endolysosmes in cells 2 revealed by super resolution microscopy

description: The sub-cellular positioning of endolysosomes is crucial for regulating
 their function. Particularly, the positioning of endolysosomes between the
 cell periphery versus the peri-nuclear region impacts autophagy, mTOR
 (mechanistic target of rapamycin) signaling and other processes. The
 mechanisms that regulate the positioning of endolysosomes at these two
 locations are still being uncovered. Here, using quantitative
 super-resolution microscopy in intact cells, we show that the retrograde
 motor dynein forms nano-clusters on endolysosomal membranes containing 1-2
 dyneins, with an average of ~3 nanoclusters per endolysosome. These data
 suggest that a very small number of dynein motors (1-6) drive endolysosome
 motility inside cells. Surprisingly, dynein nano-clusters are slightly
 larger on peripheral endolysosomes having higher cholesterol levels
 compared to peri-nuclear ones. By perturbing endolysosomal membrane
 cholesterol levels, we show that dynein copy number within nano-clusters
 is influenced by the amount of endolysosomal cholesterol while the total
 number of nano-clusters per endolysosome is independent of cholesterol.
 Finally, we show that the dynein adapter protein ORP1L (Oxysterol Binding
 Protein Homologue) regulates the number of dynein motors within
 nano-clusters in response to cholesterol levels. We propose a new model by
 which endolysosomal transport and positioning is influenced by the
 cholesterol sensing adapter protein ORP1L, which influences dynein’s copy
 number within nano-clusters.
description: The source data is organized by figure number and corresponds to
 the data used to make the bar plots in Figures 1, 2 and 4. Each source
 data is an excel file containing columns of numbers. Each column
 corresponds to a condition tested in the manuscript and the title of each
 column describes the condition tested such as "no treatment",
 "low cholesterol" and "high cholesterol". An
 additional title is provided when the measurement was done on peripheral
 or peri-nuclear endolysosomes separately ("peripheral" and
 "peri-nuclear"). When this secondary title is omitted, the
 measurement was done on all endolysosomes. Finally, each column has a
 third title corresponding to the measured entity such as "number of
 localizations", "filipin intensity". For the histogram in
 Figure 3, matlab files in the form of .mat is included. The Read Me text
 file describes the content and data structure. These files can be used
 with the Matlab code diposited on Github (melikelab/elife) to generate the
 histograms and perform the statistical analysis.
DOI: 10.5061/dryad.vhhmgqnrx
title: Who are we now? A demographic assessment of the evolution societies

description: Scientific societies have the potential to catalyze support for
 communities that have been historically excluded from science. Many of
 these societies have formed committees to propose and administer
 initiatives to promote the career and well-being of their members, with a
 special emphasis on racial and ethnic minorities. Yet, these societies are
 rarely armed with data to inform their proposals. Three of the evolution
 societies (American Society of Naturalists, "ASN"; Society of
 Systematic Biologists, "SSB"; Society for the Study of
 Evolution, "SSE") have also formed Diversity, Equity, and
 Inclusion committees in the last few years. As a first step in determining
 the needs of the societies, these committees collected data on the
 demographic characteristics of the societies' constituents by
 surveying the attendants of the Evolution 2019 meeting. Here, we report
 the proportions for different demographic groups in attendance at the
 meeting and compare these proportions to the demographics of recipients of
 Ph.D. degrees either in evolutionary biology or in the broader life
 sciences, as well as population demographics of the USA. Our results
 indicate that historically excluded groups are still underrepresented
 across US-based evolutionary biology professional societies. We explore
 whether demographic composition differs at different professional stages
 and find that representation for women and LGBTQ+ members decreases as
 career stage progresses. We also find some evidence for heterogeneity
 across societies in terms of racial composition. Finally, we discuss the
 caveats and limitations of our procedures. Our results will serve to
 inform future efforts to collect demographic data at the society levels,
 which should in turn be used to design and implement evidence-based
 initiatives for inclusion and equity. This report should be a starting
 point for systematic efforts to characterize ever-changing representation
 in evolutionary biology and to work towards inclusion of all groups.
DOI: 10.5061/dryad.j3tx95xcm
title: rs1048943 in CYP1A1 gene in laryngeal cancer- Sudanese study

description: Background: The CYP1A1 gene is essential in the metabolism of carcinogenic
 polycyclic aromatic hydrocarbons (PAHs). Numerous studies have
 investigated the links between the polymorphism Ile462Val rs1048943
 A&gt;G and its association with different cancers but the results have
 been variable. In this study, we studied rs1048943 in Sudanese patients
 diagnosed with laryngeal cancer. Methods: This is a case-control study of
 49 laryngeal cancer cases and 50 healthy controls. Restriction fragment
 length polymorphisms (RFLP) were used to analyse the fragment region of
 the CYP1A1 gene that contains rs1048943. Results: The average age of the
 patients was 51.2 years old and the male to female ratio was 1:1.
 Well-differentiated squamous cell carcinoma constituted the majority of
 the histopathological diagnoses. Ile462Val rs1048943 A&gt;G was not
 found in any of the cases but was found in heterozygous form in four
 controls (p value 0.1331, OR 0.1044, 95% CI, 0.0054-1.9924). Conclusions:
 Our study did not show a significant association of CYP1A1 Ile462Val
 rs1048943 A&gt;G with laryngeal cancer. Future studies may need to
 test additional single nucleotide polymorphisms (SNPs) in laryngeal cancer
 tissue samples to identify the effect of those SNPs on laryngeal cancer.
DOI: 10.5061/dryad.sxksn0323
title: Supplemental material for: Clinical and neuroimaging outcomes of direct endovascular thrombectomy vs. bridging therapy in large vessel occlusion patients: a secondary analysis of SELECT cohort study

description: Objective: To evaluate the comparative safety and efficacy of
 direct endovascular thrombectomy(dEVT) compared to bridging
 therapy(BT:IV-tPA+EVT) and assess if BT potential benefit relates to
 stroke severity, size and initial presentation to EVT vs. non-EVT center.
 Methods: In a prospective multicenter cohort-study of imaging selection
 for endovascular thrombectomy[SELECT], anterior-circulation large vessel
 occlusion (LVO) patients presenting to EVT-capable centers within 4.5hours
 from last-known-well were stratified into BT vs. dEVT. The primary outcome
 was 90-day functional independence[modified Rankin Scale(mRS)=0-2].
 Secondary outcomes included a shift across 90-day mRS grades, mortality,
 symptomatic intracranial hemorrhage. We also performed subgroup-analyses
 according to initial presentation to EVT-capable center (direct versus
 transfer), stroke severity and baseline infarct core volume. Results: We
 identified 226 LVOs (54%:men, mean age:65.6±14.6years, median NIHSS-score:
 17, 28% received dEVT). Median time from arrival to groin-puncture did not
 differ in BT-patients when presenting directly[dEVT:1.43 (IQR=1.13-1.90)
 hours vs. BT:1.58(IQR=1.27-2.02)hours,p=0.40] or transferred to
 EVT-capable centers[dEVT:1.17 (IQR: 0.90-1.48) hours vs. BT:1.27 (IQR:
 0.97-1.87) hours,p=0.24]. BT was associated with higher odds of 90-day
 functional independence (57% vs. 44%,aOR=2.02,95%CI:1.01-4.03,p=0.046) and
 functional improvement (adjusted cOR=2.06,95%CI:1.18-3.60,p=0.011), and
 lower likelihood of 90-day mortality (11% vs. 23%,aOR:
 0.20,95%CI:0.07-0.58,p=0.003). No differences in any other outcomes were
 detected. In subgroup-analyses, BT patients with baseline
 NIHSS-scores&lt;15 had higher functional independence likelihood
 compared to dEVT (aOR=4.87,95%CI:1.56-15.18,p=0.006); this association was
 not evident for patients with NIHSS-scores≥15
 (aOR=1.05,95%CI:0.40-2.74,p=0.92). Similarly, functional outcomes
 improvements with BT were detected in patients with core volume strata
 (Ischemic core &lt;50cc: aOR: 2.10, 95% CI:1.02-4.33, p=0.044 vs
 ischemic core ≥50cc: aOR: 0.41,95% CI:0.01-16.02,p=0.64) and transfer
 status (transferred: aOR: 2.21,95% CI:0.93-9.65,p=0.29 vs direct to EVT
 center: aOR:1.84,95%CI:0.80-4.23,p=0.15).  Conclusions: Bridging
 therapy appears to be associated with better clinical outcomes, especially
 with milder NIHSS-scores, smaller presentation core volumes and those who
 were “dripped and shipped”. Classification of Evidence: This study
 provides Class III evidence that for patients with ischemic stroke from
 anterior-circulation LVO within 4.5 hours from last-known-well, bridging
 therapy compared to direct endovascular thrombectomy leads to better
 90-day functional outcomes.
DOI: 10.5061/dryad.rn8pk0p8k
title: Studies of Vietnamese pteridophyte flora

description: Two new records, Adiantum capillus-junonis and Actinostachys wagneri are
 reported for Vietnam based on our new collections. A new species
 Hymenophyllum bryoides is described to accommodate its morphological and
 genetical distinctiveness from other congeneric species. Photographs of
 key characters, distributions, ecology, and notes of all the above species
 are provided.
DOI: 10.5061/dryad.jwstqjq7x
title: Data from: Quantitative evaluation of posture control in rats with inferior olive lesions

description: Impairment of inferior olivary neurons (IONs) affects whole-body movements
 and results in abnormal gait and posture. Because IONs are activated by
 unpredicted motion rather than regular body movements, the postural
 dysfunction caused by ION lesions is expected to involve factors other
 than simple loss of feedback control. In this study, we measured the
 postural movements of rats with pharmacological ION lesions (IO rats)
 trained to stand on their hindlimbs. The coordination of body segments, as
 well as the distribution and frequency characteristics of center of mass
 (COM) motion, were analyzed. We determined that the lesion altered the
 peak properties of the power spectrum density of the COM, whereas changes
 in coordination and COM distribution were minor. To investigate how the
 observed properties reflected changes in the control system, we
 constructed a mathematical model of the standing rats and quantitatively
 identified the control system. We found an increase in linear proportional
 control and a decrease in differential and nonlinear control in IO rats
 compared with intact rats. The dystonia-like changes in body stiffness
 explain the nature of the linear proportional and differential control,
 and a disorder in the internal model is one possible cause of the decrease
 in nonlinear control.
DOI: 10.5061/dryad.m37pvmd16
title: Food plant shifts drive the diversification of Sack-bearer moths

description: Lepidoptera are a highly diverse group of herbivorous insects, however
 some superfamilies have relatively few species. Two alternative hypotheses
 for drivers of Lepidoptera diversity are shifts in food plant use or
 shifts from concealed to external feeding as larvae. Many studies address
 the former hypothesis, but with bias towards externally feeding taxa. One
 of the most striking examples of species disparity between sister lineages
 in Lepidoptera is between the concealed feeding Sack-bearer Moths
 (Mimallonoidea), which contain about 300 species, and externally feeding
 Macroheterocera, which have over 74,000 species. We provide the first
 dated tree of Mimallonidae to understand the diversification dynamics of
 these moths in order to fill a knowledge gap pertaining to drivers of
 diversity within an important concealed feeding clade. We find that
 Mimallonidae is an ancient Lepidoptera lineage that originated in the
 Cretaceous ca. 105 million years ago and has had a close association with
 the plant order Myrtales for the past 40 million years. Diversification
 dynamics are tightly linked with food plant usage in this group. Reliance
 on Myrtales may have influenced diversification of Mimallonidae because
 clades that shifted away from the ancestral condition of feeding on
 Myrtales have the highest speciation rates in the family.
description: Molecular data reused from: St Laurent, R. A., C. G.
 C. Mielke, D. Herbin, K. M. Dexter, and A. Y. Kawahara. 2020. A new target
 capture phylogeny elucidates the systematics and evolution of wing
 coupling in sack-bearer moths. Systematic Entomology
 45:653–669. https://doi.org/10.1111/syen.12421
 New analyses were conducted using the above dataset.
description: The README file explains the contents of this package in
 detail.
DOI: 10.5061/dryad.8cz8w9gp8
title: Data from: Miracle of light in evolution unravels panspermia theory of origin of life

description: The hypothesis of origin of life is ancillary to how life evolved on earth
 based on the laws of astrophysics. Evolution of life on earth, based on
 the laws of Astrophysics, is the benchmark to unravel ‘Panspermia Theory
 of Origin of Life’ which is gaining momentum in recent years with
 sufficient scientific evidences. All these evidences are already found
 mentioned in the two categories of vedic knowledge, knowledge of material
 sciences (apara vidya) and knowledge of the inner world spiritual
 knowledge (para vidya). “Jyotish”, a Vedānga, with explicit scientific
 proof advocates that evolution of all life is only on our planet in
 physical forms and nowhere else in the Universe. The underlying cause is
 that light does its magical trick: the magic of transformation of matter
 into life and the magic of transformation of light into living energy that
 transfers from plants to all animals. Advanced Panspermia Origin of life
 explains the plausible mechanism of connecting the inorganic chemistry
 available to us in the universe and that life arose from it as an emergent
 property of matter. Evolution of life on earth addresses the two critical
 areas of advanced complex life of ‘Cambrian Explosion’ and the development
 of even more complex and intricate human brain on earth. Electromagnetic
 force is the main criterion for encoding of DNA during origin of the cell,
 conserving and decoding of DNA in evolution. Solar disturbances and their
 particle emissions are the most probable link between biological and
 extra-terrestrial events.
description: All research papers published in regard to arriving at the
 information for unraveling the mysterious problem of panspermia origin of
 life and evolution of life on earth.
DOI: 10.15468/dl.xvux8n
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris pygmaea",
 "Year 2021-2026"
 ]
}

 The dataset includes 617 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002725-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.