cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.s1v61
title: Data from: The response of migratory populations to phenological change: a Migratory Flow Network modelling approach

description: 1. Declines in migratory species have been linked to anthropogenic climate
 change through phenological mismatch, which arises due to asynchronies
 between the timing of life-history events (such as migration) and the
 phenology of available resources. Long-distance migratory species may be
 particularly vulnerable to phenological change in their breeding ranges,
 since the timing of migration departure is based on environmental cues at
 distant non-breeding sites. 2. Migrants may, however, be able to adjust
 migration speed en route to the breeding grounds and thus ability of
 migrants to update their timing of migration may depend critically on
 stopover frequency during migration; however, understanding how migratory
 strategy influences population dynamics is hindered by a lack of
 predictive models explicitly linking habitat quality to demography and
 movement patterns throughout the migratory cycle. 3. Here, we present a
 novel modelling framework, the Migratory Flow Network (MFN), in which the
 seasonally varying attractiveness of breeding, winter, and stopover
 regions drives the direction and timing of migration based on a simple
 general flux law. 4. We use the MFN to investigate how populations respond
 to shifts in breeding site phenology based on their frequency of stopover
 and ability to detect and adapt to these changes. 5. With perfect
 knowledge of advancing phenology, ‘jump’ migrants (low frequency stopover)
 require more adaptation for populations to recover than ‘hop’ and ‘skip’
 (high or medium frequency stopover) migrants. If adaptation depends on
 proximity, hop and skip migrants’ populations can recover but jump
 migrants cannot adjust and decline severely. 6. These results highlight
 the importance of understanding migratory strategies and maintaining
 high-quality stopover habitat to buffer migratory populations from
 climate-induced mismatch. 7. We discuss how MFNs could be applied to
 diverse migratory taxa, and highlight the potential of MFNs as a tool for
 exploring how migrants respond to other environmental changes such as
 habitat loss.
description: MFN_HSJ_Mismatch R
 CodeR
 code to simulate model described. To run in R type
 Source("HSJMain.R")
DOI: 10.5061/dryad.3rp58
title: Data from: Feasibility of a blended group intervention (bGT) for major depression: uncontrolled interventional study in a university setting

description: Objective: This study investigated the feasibility of a novel blended
 (face-to-face and computer-based) group intervention for the reduction of
 depressive symptoms in major depression. Design: Patient-centred
 uncontrolled interventional study. Setting: University setting in a
 general community sample. A multi-modal recruitment strategy (public
 health centres and public areas) was applied. Participants: Based on
 independent interviews, 26 participants, diagnosed with major depressive
 disorder (81 % female; 23 % comorbidity &gt; 1, 23 % comorbidity
 &gt; 2), entered treatment. Intervention: Acceptance and
 mindfulness-based, as well as self-management and resource-oriented
 psychotherapy principles served as the theoretical basis for the
 low-threshold intervention. The blended format included face-to-face
 sessions, complemented with multimedia presentations and a platform
 featuring videos, online work sheets, an unguided group-chat, as well as
 remote therapistpatient communication. Main outcome measures: The Center
 for Epidemiological Studies-Depression scale (CES-D) and the twelve-item
 General Health Questionnaire (GHQ-12). Results: Large to very large within
 group effect sizes were found on self-reported depression (F(2,
 46.37)=25.69, p &lt; .001; d = 1.80), general health (F(2,46.73)=
 11.47, p &lt; .001; d = 1.32), personal resources (F(2,43.36)= 21.17,
 p &lt; .001; d = 0.90) and mindfulness (F(2,46.22)= 9.40, p &lt;
 .001; d = 1.12) after a follow-up period of three months. Treatment
 satisfaction was high and 69 % ranked computer and multimedia use as a
 therapeutic factor. Furthermore, participants described treatment
 intensification as important advantage of the blended format. Half of
 patients (48 %) would have preferred more time for personal exchange.
 Conclusion: The investigated blended group format seems feasible for the
 reduction of depressive symptoms in major depression. The development of
 blended interventions can benefit from assuring that highly structured
 treatments actually meet patients’ needs. As a next step, the intervention
 should be tested in comparative trials in routine care. Trial
 registration: DRKS-ID: DRKS00010894
description: Data Pre to Follow
 UpData_Pre_to_Follow_Up.xlsx
DOI: 10.5061/dryad.48vb7
title: Data from: Patterns of thermal constraint on ectotherm activity

description: Thermal activity constraints play a major role in many aspects of
 ectotherm ecology, including vulnerability to climate change. Therefore,
 there is strong interest in developing general models of the temperature
 dependence of activity. Several models have been put forth (explicitly or
 implicitly) to describe such constraints; nonetheless, tests of the
 predictive abilities of these models are lacking. In addition, most models
 consider activity as a threshold trait instead of considering continuous
 changes in the vigor of activity among individuals. Using field data for a
 tropical lizard (Anolis cristatellus) and simulations parameterized by our
 observations, we determine how well various threshold and
 continuous-activity models match observed activity patterns. No models
 accurately predicted activity under all of the thermal conditions that we
 considered. In addition, simulations showed that the performance of
 threshold models decreased as temperatures increased, which is a troubling
 finding given the threat of global climate change. We also find that
 activity rates are more sensitive to temperature than are the
 physiological traits often used as a proxy for fitness. We present a model
 of thermal constraint on activity that integrates aspects of both the
 threshold model and the continuous-activity model, the general features of
 which are supported by activity data from other species. Overall, our
 results demonstrate that greater attention should be given to fine-scale
 patterns of thermal constraint on activity.
description: GundersonLeal15_AmNat_Anole_DataActivity data for Anolis cristatellusChristian varanid spp activityData on activity for Varanids from Christian and Weavers 1996
DOI: 10.5061/dryad.2bb5q
title: Data from: A case for a joint strategy of diversified bet hedging and plasticity in the pea aphid wing polyphenism

description: Phenotypic plasticity and diversified bet hedging are strategies for
 coping with variable environments. Plasticity is favoured when an organism
 can predict future conditions using environmental cues, while bet hedging
 is favoured when predictive cues are not available. Theoretical analyses
 suggest that many organisms should use a mixture of both strategies,
 because environments often present both scenarios. Here, we examine if the
 pea aphid wing polyphenism, a well-known case of plasticity, is
 potentially a mixture of plasticity and bet hedging. In this polyphenism,
 asexual females produce more winged offspring in crowded conditions, and
 wingless offspring in uncrowded conditions. We find that pea aphids use
 plasticity to respond to crowding and we find considerable genetic
 variation for this response. We further show that individual aphids
 produce both winged and wingless offspring, consistent with the
 variability expected in a bet hedging trait. We conclude that the pea
 aphid wing polyphenism system is probably a mixture of plasticity and bet
 hedging. Our study adds to a limited list of empirical studies examining
 mixed strategy usage, and suggests that mixed strategies may be common in
 dispersal traits.
description: Response to Crowding of
 10 Pea Aphid GenotypesThis csv file contains
 the offspring phenotype counts (winged and wingless) from ten pea aphid
 females of ten genotypes. Offspring were collect for 24 hours prior to
 counting (pre-crowding) and four consecutive days post-crowding (Day 1-4).
 The winged offspring percentage was also calculated. There are three
 replicates. The original location of each genotype's wild collection
 site is also included. The facultative endosymbionts are included for each
 genotype.PeaAphid_10genotypes_4days_CrowdingCondition.csvPea Aphid Offspring Phenotype Counts from Individual FemalesThis csv file contains pea aphid offspring phenotype counts (winged and wingless) from three genotypes of 30 individual females. Females were crowded for 24 hours in three groups of ten and moved individually to plants for 24 hours. Offspring larviposited on the plants were counted. This measured the individual female response of female aphids to crowding conditions. The grouped type are the sum of the offspring from each crowded group (i.e. females 1-10 were crowded together and are group 1).Individual_Aphid_Offspring Phenotypes.csv
DOI: 10.5061/dryad.jk68b
title: Data from: Potential role of Cyr61 induced degeneration of human Müller cells in diabetic retinopathy

description: The degeneration of Müller cells has been recognized to involve in the
 pathogenesis of diabetic retinopathy. However, the mechanism is not yet
 clear. This study is to explore the potential role of Cyr61, a secreted
 signaling protein in extracellular matrix, in inducing human Müller cell
 degeneration in diabetic retinopathy (DR). Twenty patients with
 proliferative diabetic retinopathy (PDR) and twelve non-diabetic patients
 were recruited for this study. Vitreous fluid was collected during
 vitrectomy surgery for Cyr61 ELISA. Human Müller cell line MIO-M1 were
 cultured to be subconfluent, and then treated with glucose (0–20 mM) or
 Cyr61 (0–300 ng/ml). Cyr61 expression induced by increasing concentrations
 of glucose was evaluated by RT-qPCR and Western blot. Effects of Cyr61 on
 Müller cells viability, migration and apoptosis were observed by MTT
 assay, Transwell assay, and TUNEL assay. Vitreous Cyr61 levels were
 observed to be 8-fold higher in patients with PDR (3576.92±1574.58 pg/mL),
 compared with non-diabetic controls (436.14±130.69 pg/mL). Interestingly,
 the active PDR group was significantly higher than the quiescent PDR group
 (P&lt;0.01). In retinal Müller cells culture, high glucose
 significantly and dose-dependently elevated Cyr61 expression at both mRNA
 and protein levels. Cyr61 at high concentrations dose-dependently
 inhibited the viability and migration of Müller cells. TUNEL assay further
 revealed that high concentration of Cyr61 significantly promoted the cell
 apoptosis. In conclusion, these findings demonstrated for the first time
 that the expression of Cyr61 was elevated by high glucose in Müller cells,
 and Cyr61 inhibited cell viability and migration while induced apoptosis,
 suggesting the potential role of Cyr61 in Müller cell degeneration. The
 elevated Cyr61 levels in vitreous fluid of PDR patients further support
 its role in diabetic retinopathy (DR).
description: experimental
 datadata for the: (1)
 Vitreous levels of Cyr61 in PDR and non-diabetic patients were determined
 by ELISA;(2) Cyr61 expression in Müller cells was observed at mRNA and
 protein level. (3) Effect of Cyr61 on the viability, migration and
 apoptosis of Müller cells was observedexperimental_data.xlsx
DOI: 10.5061/dryad.cs5th
title: Data from: Hormonal and metabolic responses to upper temperature extremes in divergent life-history ecotypes of a garter snake

description: Extreme temperatures constrain organismal physiology and impose both acute
 and chronic effects. Additionally, temperature-induced hormone-mediated
 stress response pathways and energetic trade-offs are important drivers of
 life-history variation. This study employs an integrative approach to
 quantify acute physiological responses to high temperatures in divergent
 life-history ecotypes of the western terrestrial garter snake (Thamnophis
 elegans). Using wild-caught animals, we measured oxygen consumption rate
 and physiological markers of hormonal stress response, energy
 availability, and anaerobic respiration in blood plasma across five
 ecologically relevant temperatures (24, 28, 32, 35, and 38° C; 3-hour
 exposure). Corticosterone, insulin, and glucose concentrations all
 increased with temperature, but with different thermal response curves,
 suggesting that high temperatures differently affect energy-regulation
 pathways. Additionally, oxygen consumption rate increased without plateau
 and lactate concentration did not increase with temperature, challenging
 the recent hypothesis that oxygen limitation sets upper thermal tolerance
 limits. Finally, animals had similar physiological thermal responses to
 high-temperature exposure regardless of genetic background, suggesting
 that local adaptation has not resulted in fixed differences between
 ecotypes. Together, these results identify some of the mechanisms by which
 higher temperatures alter hormonal-mediated energy balance in reptiles and
 potential limits to the flexibility of this response.
description: TelegansThermalToleranceProvides experimental data on ecological background, morphological measures, and physiological responses to different temperatures. Used for all analyses in manuscript.
DOI: 10.5061/dryad.tq34k
title: Data from: The evolution of bacterial mutation rates under simultaneous selection by inter-specific and social parasitism

description: Many bacterial populations harbour substantial numbers of hypermutable
 bacteria, in spite of hypermutation being associated with deleterious
 mutations. One reason for the persistence of hypermutators is the
 provision of novel mutations, enabling rapid adaptation to continually
 changing environments, for example coevolving virulent parasites. However,
 hypermutation also increases the rate at which intraspecific parasites
 (social cheats) are generated. Interspecific and intraspecific parasitism
 are therefore likely to impose conflicting selection pressure on mutation
 rate. Here, we combine theory and experiments to investigate how
 simultaneous selection from inter- and intraspecific parasitism affects
 the evolution of bacterial mutation rates in the plant-colonizing
 bacterium Pseudomonas fluorescens. Both our theoretical and experimental
 results suggest that phage presence increases and selection for public
 goods cooperation (the production of iron-scavenging siderophores)
 decreases selection for mutator bacteria. Moreover, phages imposed a much
 greater growth cost than social cheating, and when both selection
 pressures were imposed simultaneously, selection for cooperation did not
 affect mutation rate evolution. Given the ubiquity of infectious phages in
 the natural environment and clinical infections, our results suggest that
 phages are likely to be more important than social interactions in
 determining mutation rate evolution.
description: mutation rates
 dataData collected in the
 lab and analysed using R software. Malthusian parameters used to describe
 growth rates in competition experiments.DRYAD- mutator
 data.zip
DOI: 10.3929/ethz-c-000790850
title: Pauli crystal superradiance – dataset
DOI: 10.5061/dryad.533qk3d
title: Data from: Trade-offs in provisioning and stability of ecosystem services in agroecosystems

description: Changes in land use generate trade-offs in the delivery of ecosystem
 services in agricultural landscapes. However, we know little about how the
 stability of ecosystem services responds to landscape composition, and
 what ecological mechanisms underlie these trade-offs. Here, we develop a
 model to investigate the dynamics of three ecosystem services in
 intensively-managed agroecosystems, i.e. pollination-independent crop
 yield, crop pollination, and biodiversity. Our model reveals trade-offs
 and synergies imposed by landscape composition that affect not only the
 magnitude but also the stability of ecosystem service delivery. Trade-offs
 involving crop pollination are strongly affected by the degree to which
 crops depend on pollination and by their relative requirement for
 pollinator densities. We show conditions for crop production to increase
 with biodiversity and decreasing crop area, reconciling farmers’
 profitability and biodiversity conservation. Our results further suggest
 that, for pollination-dependent crops, management strategies that focus on
 maximising yield will often overlook its stability. Given that agriculture
 has become more pollination-dependent over time, it is essential to
 understand the mechanisms driving these trade-offs to ensure food
 security.
description: Code ecosystem services
 in agroecosystemsCode that uses the
 differential equations model to simulate the mean provision and temporal
 variability of ecosystem services in intensively-managed agricultural
 landscapesCODE.rtf
DOI: 10.5061/dryad.2f452
title: Data from: Predator diversity reduces habitat colonization by mosquitoes and midges

description: Changes in predator diversity via extinction and invasion are increasingly
 widespread and can have important ecological and socio-economic
 consequences. Anticipating and managing these consequences requires
 understanding how predators shape ecological communities. Previous
 predator biodiversity research has focused on post-colonization processes.
 However, predators can also shape communities by altering patterns of prey
 habitat selection during colonization. The sensitivity of this
 non-consumptive top down mechanism to changes in predator diversity is
 largely unexamined. To address this gap, we examined patterns of dipteran
 oviposition habitat selection in experimental aquatic habitats in response
 to varied predator species richness while holding predator abundance
 constant. Caged predators were used in order to disentangle behavioural
 oviposition responses to predator cues from potential post-oviposition
 consumption of eggs and larvae. We hypothesized that because increases in
 predator richness often result in greater prey mortality than would be
 predicted from independent effects of predators, prey should avoid
 predator-rich habitats during colonization. Consistent with this
 hypothesis, predator-rich habitats received 48% fewer dipteran eggs than
 predicted, including 60% fewer mosquito eggs and 38% fewer midge eggs. Our
 findings highlight the potentially important links between predator
 biodiversity, prey habitat selection and the ecosystem service of pest
 regulation.
description: Dipteran oviposition
 response to varied predator species richnessThis dataset contains
 raw oviposition count data for species of Diptera in Charles City county,
 Virginia, USA. Insects colonized artificial aquatic mesocosms that
 contained predator communities of varying predator species richness. Zero
 predators, or no predators contained no predator organisms. One predator,
 or single species treatments contained three individuals of only one of
 the three predator types used in the experiment. The three predator, or
 high richness treatment mesocosms each contained three individuals, one of
 each predator type used in the experiment. The Culex raft and chironomid
 mass columns contain counts of egg clutches for Culex spp. mosquitoes and
 chironomid midges, respectively, only. The dipteran clutches column
 contains counts for Culex spp. mosquitoes, chironomid midges, and
 additional dipteran colonizers, all summed for the indivudual mesocosm.
 These data were collected in the field during summer,
 2014.MASTER.DATASET.xlsx
DOI: 10.5061/dryad.h3c55cc
title: Data from: Special delivery: scavengers direct seed dispersal towards ungulate carcasses

description: Cadaver decomposition-islands around animal carcasses can facilitate
 establishment of various plant life. Facultative scavengers have great
 potential for endozoochory, and often aggregate around carcasses. Hence,
 they may disperse plant seeds that they ingest across the landscape
 towards cadaver decomposition-islands. Here, we demonstrate this novel
 mechanism along a gradient of wild tundra reindeer carcasses. First, we
 show that the spatial distribution of scavenger feces (birds and foxes)
 was concentrated around carcasses. Second, feces of the predominant
 scavengers (corvids) commonly contained viable seeds of crowberry, a
 keystone species of the alpine tundra with predominantly vegetative
 reproduction. We suggest that cadaver decomposition-islands function as
 endpoints for directed endozoochory by scavengers. Such a mechanism could
 be especially beneficial for species that rely on small scale disturbances
 in soil and vegetation, such as several Nordic berry-producing species
 with cryptic generative reproduction.
description: ESM_DRYAD_special_delivery_dataThe text file contains count data of bird (A) and mammal (M) feces, and presence or absence (Rp) of rodent fecal pellet groups at 75 1*1m survey plots distributed over a reindeer mass die-off (N = 323) site in Hardangervidda, Norway. 'Car_den' refers to carcass density (per m2), followed by a numeric indicating the search radius of the density estimator. 'Carc_dist' refers to the distance of each survey plot to the nearest carcass. POINT_X and POINT_Y are the encrypted coordinates of the survey plots.
DOI: 10.15468/dl.mqdwjt
title: Occurrence Download

description: A dataset containing 2615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Curcuma longa"
 ]
}

 The dataset includes 2615 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001380-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.610p0s4
title: Data from: Nonlinear response of ecosystem respiration to multiple levels of temperature increases

description: Global warming exerts profound impacts on terrestrial carbon cycles and
 feedback to climates. Ecosystem respiration (ER) is one of the main
 components of biosphere CO2 fluxes. However, knowledge regarding how ER
 responds to warming is still lacking. In this study, a manipulative
 experiment with five simulated temperature increases (Control, Warming 1,
 Warming 2, Warming 3, Warming 4) was conducted to investigate ER responses
 to warming in an alpine meadow on the Tibetan Plateau. The results showed
 that ER was suppressed by warming both in dry and wet years. The responses
 of ER to warming all followed a nonlinear pattern. The nonlinear processes
 can be divided into three stages, including the quick-response stage (W1),
 stable stage (W1–W3) and transition stage (W4). Compared with the
 nonlinear model, the linear model maximumly overestimated the response
 ratios of ER to warming 2.2 % and 3.2 % in 2015 and 2016, respectively,
 and maximumly underestimated the ratio 7.0 % and 2.7 %. The annual
 differences in ER responding to warming were mainly attributed to the
 distinct seasonal distribution of precipitation. Specially, we found that
 the abrupt shift response of ER to warming under W4 treatment in 2015,
 which might be regulated by the excitatory effect of precipitation after
 long-term drought in the Mid-growing season. This study highlights the
 importance of the nonlinearity of warming effects on ER, which should be
 taken into the global-C-cycling models for better predicting future carbon
 - climate feedbacks.
description: Data from: Nonlinear
 response of ecosystem respiration to multiple levels of temperature
 increasesER data includes the
 early growing season, late growing season and whole growing season in
 2015-2016 growing season under different warming
 treatments.Data for ecology and
 evolution.xlsx