cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0938697.10fu
title: SH0938697.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938698.10fu
title: SH0938698.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938699.10fu
title: SH0938699.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938700.10fu
title: SH0938700.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938701.10fu
title: SH0938701.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938702.10fu
title: SH0938702.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938703.10fu
title: SH0938703.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938704.10fu
title: SH0938704.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938705.10fu
title: SH0938705.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0938706.10fu
title: SH0938706.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.jzchtb
title: Occurrence Download

description: A dataset containing 111427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus pygmaeus (Leach, 1825)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 111427 records from 1281 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100060-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20035623
title: Additional file 2 of LukS-PV inhibits hepatocellular carcinoma cells migration by downregulating HDAC6 expression

description: Additional file 2: Supplementary Table S2. Identifed proteins associated with HDAC6 were analyzed by mass spectrometry.
DOI: 10.6084/m9.figshare.14268682
title: Effect of pile arrangement on the bending performance of an existing bridge footing under lateral seismic loading

description: Abstract In this paper, to further understand the bending failure mechanism of a bridge footing subjected to lateral seismic loading, the effect of pile arrangement on the bending performance of a footing is mainly investigated by parametric analysis. The pile location can considerably affect the bending failure pattern of the footing by constraining the extent of yielding of footing top bars. The piles placed at the center of the sides parallel to the loading direction can constrain the extent of yielding of the top bars in the loading direction. Similarly, the piles at the center of the sides perpendicular to the loading direction can constrain the extent of yielding of the top bars in the other direction. The center pile can constrain the extent of yielding of the top bars in two directions. Additionally, based on the analytical results of the parametric analysis, the application condition of the current beam theory-based design method expected to accurately evaluate the footing bending capacity is discussed from the aspect of pile spacing.
DOI: 10.6084/m9.figshare.12695744
title: Additional file 3 of Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes

description: Additional file 3:Table S2. List of differentially expressed genes after genome duplication at a statistical significance level (P &lt; 0.05, one-way ANOVA) using normalized expression values.
DOI: 10.6084/m9.figshare.21080602
title: Additional file 3 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 3: Table S1. Differentially expressed genes (DEGs) in the ischemic heart at 1, 7, and 28 days after MI
DOI: 10.6084/m9.figshare.14268682.v1
title: Effect of pile arrangement on the bending performance of an existing bridge footing under lateral seismic loading

description: Abstract In this paper, to further understand the bending failure mechanism of a bridge footing subjected to lateral seismic loading, the effect of pile arrangement on the bending performance of a footing is mainly investigated by parametric analysis. The pile location can considerably affect the bending failure pattern of the footing by constraining the extent of yielding of footing top bars. The piles placed at the center of the sides parallel to the loading direction can constrain the extent of yielding of the top bars in the loading direction. Similarly, the piles at the center of the sides perpendicular to the loading direction can constrain the extent of yielding of the top bars in the other direction. The center pile can constrain the extent of yielding of the top bars in two directions. Additionally, based on the analytical results of the parametric analysis, the application condition of the current beam theory-based design method expected to accurately evaluate the footing bending capacity is discussed from the aspect of pile spacing.
DOI: 10.6084/m9.figshare.12695877
title: Additional file 10 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 10: Data Set 3. Functional annotations of the two modules.
DOI: 10.6084/m9.figshare.12695883
title: Additional file 12 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 12: Data Set 5. The sequences of all 640 transcripts.
DOI: 10.6084/m9.figshare.21080611
title: Additional file 6 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 6: Table S4. The list of 89 significantly changed HIF-1 target genes in the ischemic monkey heart
DOI: 10.6084/m9.figshare.21080605.v1
title: Additional file 4 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 4: Table S2. The list of the top 25 DEGs enriched in inflammatory response, cell proliferation, cardiac fibrosis, and mitochondrial metabolism after MI
DOI: 10.6084/m9.figshare.21080614.v1
title: Additional file 7 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 7: Table S5. The list of HIF-1 target genes positively or negatively correlated with myocardial copper status
DOI: 10.6084/m9.figshare.12838964
title: Additional file 1 of A ten-gene signature-based risk assessment model predicts the prognosis of lung adenocarcinoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.12838967
title: Additional file 2 of A ten-gene signature-based risk assessment model predicts the prognosis of lung adenocarcinoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.21080608.v1
title: Additional file 5 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 5: Table S3. The list of previously validated HIF-1 target genes
DOI: 10.6084/m9.figshare.11653374
title: MOESM1 of Transcriptomic profiling sheds light on the blue-light and red-light response of oyster mushroom (Pleurotus ostreatus)

description: Additional file 1: Table S1. Results and primer sequences of qRT-PCR. PKG, pileus dark treatment; PBG, pileus blue-light treatment. Each treatment comprised three biological replicates.
DOI: 10.6084/m9.figshare.11653419
title: MOESM8 of Transcriptomic profiling sheds light on the blue-light and red-light response of oyster mushroom (Pleurotus ostreatus)

description: Additional file 8: Table S2. Fold change values and P values of all the expressed genes involved in the pentose phosphate pathway and glycolysis/gluconeogenesis
DOI: 10.6084/m9.figshare.12695910.v1
title: Additional file 8 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 8: Data Set 1. Expression levels of 640 genes in all analysed samples.
DOI: 10.6084/m9.figshare.12695781
title: Additional file 16 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 16: Table S7. Summary of DEGs classified into five pathways.
DOI: 10.6084/m9.figshare.12695913.v1
title: Additional file 9 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 9: Data Set 2. Normalised Z-scores of 640 genes in male cones of EPs and LPs.
DOI: 10.6084/m9.figshare.12695769.v1
title: Additional file 12 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 12: Table S3. Top 20 KEGG pathways significantly enriched with DEGs during floral transition in EF.
DOI: 10.6084/m9.figshare.12695763.v1
title: Additional file 10 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 10: Table S1. Summary of Illumina short reads.
DOI: 10.6084/m9.figshare.12695763
title: Additional file 10 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 10: Table S1. Summary of Illumina short reads.
DOI: 10.6084/m9.figshare.12695778.v1
title: Additional file 15 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 15: Table S6. Summary of all genes from the MEdarkturquoise module.
DOI: 10.6084/m9.figshare.12695699.v1
title: Additional file 2 of Study on track planning problem of multi-constrained and double-targeted

description: Supplementary information. (XLSX 28 kB)
DOI: 10.6084/m9.figshare.12695769
title: Additional file 12 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 12: Table S3. Top 20 KEGG pathways significantly enriched with DEGs during floral transition in EF.
DOI: 10.6084/m9.figshare.12695772.v1
title: Additional file 13 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 13: Table S4. All predicted transcription factors in EF during floral transition.
DOI: 10.6084/m9.figshare.12695775.v1
title: Additional file 14 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 14: Table S5. Top 20 KEGG pathways significantly enriched with DEGs in three different stages between EF and NF.
DOI: 10.6084/m9.figshare.12695877.v1
title: Additional file 10 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 10: Data Set 3. Functional annotations of the two modules.
DOI: 10.6084/m9.figshare.21080602.v1
title: Additional file 3 of Dynamic regulation of HIF-1 signaling in the rhesus monkey heart after ischemic injury

description: Additional file 3: Table S1. Differentially expressed genes (DEGs) in the ischemic heart at 1, 7, and 28 days after MI
DOI: 10.6084/m9.figshare.12695784.v1
title: Additional file 17 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 17: Table S8. The correlation coefficients of expression of mRNAs between the EF and NF during three developmental periods. r is the correlation coefficient of expression of the mRNAs.
DOI: 10.6084/m9.figshare.12695799
title: Additional file 21 of Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey

description: Additional file 21: Table S12. Summary of primers used in this study.
DOI: 10.6084/m9.figshare.12695880
title: Additional file 11 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 11: Data Set 4. Normalised Z-score values of 640 genes in all analysed samples.
DOI: 10.6084/m9.figshare.12695880.v1
title: Additional file 11 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 11: Data Set 4. Normalised Z-score values of 640 genes in all analysed samples.
DOI: 10.6084/m9.figshare.12695886
title: Additional file 13 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 13: Data Set 6. The NCBI accession number and library IDs of the RNA-seq data.
DOI: 10.6084/m9.figshare.12695886.v1
title: Additional file 13 of Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine

description: Additional file 13: Data Set 6. The NCBI accession number and library IDs of the RNA-seq data.