cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17199050
title: Annotated Insect Image Dataset for InsectMorphoAI Software

description: Description

This dataset supports the manuscript, "InsectMorphoAI: A deep learning-based software for rapid and non-invasive estimation of insect length, volume, and biomass,". It contains all the annotated image data used to train and validate the deep learning models integrated into the InsectMorphoAI software package.

The dataset is provided to ensure the full reproducibility of our research and to serve as a valuable resource for the community working on automated, image-based analysis of insects.

Dataset Components

The dataset is divided into two primary components, corresponding to the two analysis modules in the InsectMorphoAI software:

1. General-Purpose Dataset (for "Rapid Scan" / OBB)





Purpose: Used to train the general-purpose model for the "Rapid Scan" module, which performs quick linear length estimation.




Content: Contains 815 images of insects from diverse families within the orders Diptera, Hymenoptera, and Coleoptera.




Format: Images (.jpg, .png) and corresponding annotations in YOLO OBB format (.txt).



2. Taxon-Specific Dataset (for "Detailed Analysis" / Segmentation)





Purpose: Used to train the high-precision model for the "Detailed Analysis" module, which performs curvilinear length, volume, and biomass estimation. The model included with the software is specialized for Tachinidae (Diptera).




Content: Contains 1,320 images of various representative tachinid species.




Annotation Strategy: A two-stage annotation strategy was employed, and the dataset is structured to reflect this:

initial_labeling_strategy_820_images: Data corresponding to the initial annotation approach, focusing only on directly visible body parts

final_refined_dataset_500_images: This is the dataset used for the final model. The key refinement in this stage was the explicit annotation of inferred outlines for body parts partially obscured by wings or legs, where reliable estimation was possible.




Format: Images (.png) and corresponding annotations in YOLO segmentation format (.txt).



General Information





Image Acquisition: All images were captured using a high-resolution DIY microscope, the Entomoscope (Wührl et al., 2024). Multiple focal planes were stacked using Helicon Focus to achieve optimal clarity. All specimens were preserved and imaged in ethanol.




Image Diversity: For both datasets, images were captured from various views and orientations to ensure the models are robust to differences in specimen positioning.




Metadata: Detailed specimen information and the ground-truth validation measurements used in the manuscript are provided in the Supplementary Data file accompanying the publication.
DOI: 10.5065/d6hm56r1
title: Surface Meteorological (Hourly) Multi-Network Composite. Version 1.0

description: This data set contains hourly resolution surface meteorological data in National Center for Atmospheric Research/Earth Observing Laboratory (NCAR/EOL) Quality Control (QC) format from stations within the following networks, and from the following participating research organizations, for the Terrain-induced Rotor Experiment (T-REX): Arizona State University (ASU) Environmental Fluid Dynamics Group Sonics Flux Tower, California Irrigation Management Information System (CIMIS), China Lake Handar, Desert Research Institute (DRI), Great Basin Unified Air Pollution Control Division (GBUAPCD), Unidata Local Data Manager (LDM) World Meteorological Organization (WMO) (LDMSFCMETR), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Integrated Surface Flux Facility (ISFF), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Integrated Sounding System (ISS), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Mobile Integrated Sounding System (MISS), National Oceanic and Atmospheric Administration (NOAA) Forecast Systems Laboratory (FSL) Meteorological Assimilation Data Ingest System (MADIS), PestCast Weather Station Data, Tribal Environmental Exchange Network (TREX), University of Houston Flux Tower, University of Leeds Automatic Weather Stations (AWS), and the University of Utah HOBO stations. Data for the Terrain-induced Rotor Experiment (T-REX) domain (34N to 40N latitude and 115W to 126W longitude) and time period (01 March 2006 through 30 April 2006) are contained within this data set. This T-REX Hourly Surface Meteorological Composite data set contains data from 933 stations.
DOI: 10.6084/m9.figshare.29150924
title: evsBat

description: raw data for the evsBat paper.
DOI: 10.6084/m9.figshare.29150924.v2
title: evsBat

description: raw data for the evsBat paper.
DOI: 10.6084/m9.figshare.29150924.v1
title: evsBat

description: Data for the evsBat paper.
DOI: 10.5065/d6cv4g25
title: NCAR GV (HIAPER) HRT Differential GPS Data. Version 1.0

description: This dataset contains Differential GPS data collected from the Gulfstream-V aircraft during the T-REX field project. Differential GPS (DGPS) data are time series of three-dimensional airplane coordinates that provide increased accuracy and precision compared to standard GPS measurements. DGPS data were collected using a Sensor Systems model # S67-1575-76 L1/L2 antenna and NovAtel OEM4 dual-frequency (L1/L2) receiver. The files are in netCDF format.
DOI: 10.5065/d6833qbr
title: NCAR GV (HIAPER) Left Side Camera Imagery. Version 1.0

description: This dataset contains the final HIAPER left side window camera image files for the Terrain-induced Rotor Experiment (T-REX). They are in JPEG format. The individual images have also been assembled into movies in MPEG4 format in the companion dataset NCAR GV (HIAPER) Left Side Camera Video [NCAR/EOL].
DOI: 10.5065/d64b2zm1
title: NCAR GV (HIAPER) Left Side Camera Video. Version 1.0

description: This dataset contains the final HIAPER left side window video files for the Terrain-induced Rotor Experiment (T-REX). They are in MPEG4 format. The individual images are also available in the companion dataset NCAR GV (HIAPER) Left Side Camera imagery [NCAR/EOL].
DOI: 10.5065/d60k26v7
title: NSF/NCAR C-130 SABL Green Imagery. Version 1.0

description: This dataset contains the SABL green imagery from the NSF/NCAR C-130 aircraft collected during the MILAGRO field project.
DOI: 10.15468/dl.b3vb74
title: Occurrence Download

description: A dataset containing 17156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "Year is 1932"
 ]
}

 The dataset includes 17156 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035819-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2j5qct
title: CCDC 2329196: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qdv
title: CCDC 2329197: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qfw
title: CCDC 2329198: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qgx
title: CCDC 2329199: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qhy
title: CCDC 2329200: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qjz
title: CCDC 2329201: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5qk0
title: CCDC 2329202: Experimental Crystal Structure Determination

description: Related Article: Prakash Duari, Abir Sarbajna, Cheng-Han Yu, V. S. V. S. N. Swamy, Kai-Stephan Feichtner, Jens Handelmann, Viktoria H. Gessner|2024|ChemCatChem|16|e202400196|doi:10.1002/cctc.202400196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.mx8d7a
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio munnozii Cabrera"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0124092-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmgces
title: Occurrence Download

description: A dataset containing 1863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cubozoa"
 ]
}

 The dataset includes 1863 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131503-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7cqeb
title: Occurrence Download

description: A dataset containing 5045271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5045271 records from 2422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131533-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rqxnd
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosema nutans Schinz"
 ]
}

 The dataset includes 357 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044569-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3u778
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canarium divergens Engl."
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073409-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrkcdc
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia poissonii Pax"
 ]
}

 The dataset includes 145 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044619-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2woiv
title: Occurrence Download

description: A dataset containing 471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Vireo leucophrys (Lafresnaye, 1844)"
 ]
}

 The dataset includes 471 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004303-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmcd5y
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bupleurum nanum Poir."
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073451-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtvec4
title: Occurrence Download

description: A dataset listing the 13479 species recorded in GBIF matching the query:
{
 "GadmGid" : [
 "is IND.36_1"
 ]
}

 The dataset's 13479 records were derived from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073392-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxl7dx
title: Occurrence Download

description: A dataset containing 1964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Vireo plumbeus Coues, 1866"
 ]
}

 The dataset includes 1964 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004309-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57dkdz
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosema populifolium Benth. ex Harv. & Sond."
 ]
}

 The dataset includes 49 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044609-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk9445
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis circumserrata (C.K.Schneid.) C.K.Schneid."
 ]
}

 The dataset includes 155 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054830-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kovpdo
title: Occurrence Download

description: A dataset containing 11694 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cucumis sativus L."
 ]
}

 The dataset includes 11694 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009546-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93xmwt
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ajania fruticulosa (Ledeb.) Poljakov"
 ]
}

 The dataset includes 719 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044544-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpusgs
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia loheri Merr."
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054835-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxgztt
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Museu Paraense Emílio Goeldi - Mastozoology Collection",
 "TaxonKey is Eira barbara (Linnaeus, 1758)"
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004285-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpd3mv
title: Occurrence Download

description: A dataset containing 17919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.32496433333334 32.097476, 69.37031999999999 32.097476, 69.37031999999999 49.184106666666665, 35.32496433333334 49.184106666666665, 35.32496433333334 32.097476))",
 "EventDate is 2017-06-01,2017-06-30"
 ]
}

 The dataset includes 17919 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044587-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvkxv9
title: Occurrence Download

description: A dataset containing 855 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Indicator willcocksi Alexander, 1901"
 ]
}

 The dataset includes 855 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054844-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k3trz
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia plumerioides Teijsm. ex Hassk."
 ]
}

 The dataset includes 183 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044612-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyknjo
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Field Study Group of the Dutch Mammal Society (NL) - 2010 - Mammal Survey Patvinsuo National Park, northern Karelia, Finland"
 ]
}

 The dataset includes 319 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009547-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2amax
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis cooperi Ahrendt"
 ]
}

 The dataset includes 46 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054860-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2yv8e
title: Occurrence Download

description: A dataset containing 23081 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trillium erectum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23081 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044580-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zkm4g
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 {
 "or" : [
 "StateProvince is izabal",
 "StateProvince is izabal department",
 "StateProvince is izabal dept."
 ]
 },
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 1314 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004289-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.