cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7535k/31
title: otu_anova_G vs D_Neffect

description: R code for ANOVA on individual root associated bacterial taxa in Geum rossii and Deschampsia cespitosa. Test to determine effect of nitrogen addition on abundance of any bacterial taxa. Tested in each host seperately.
DOI: 10.5061/dryad.7535k/32
title: otu_anova_Nxhost

description: R code ANOVA on individual root associated bacterial taxa in Geum rossii and Deschapmsia cespitosa roots. Purpose to determine effect of host plant identity and nitrogen addition on abundance of individual bacterial taxa.
DOI: 10.5061/dryad.7535k/33
title: otu_anova_remxN

description: R code for ANOVA on individual root associated bacterial taxa in Geum rossii. Test to determine whether nitrogen addition or Deschampsia cespitosa removal (principle competitor removal) had an effect on abundance of any bacterial taxa.
DOI: 10.5061/dryad.7535k/34
title: pie_charts

description: R code: Build pie charts for each host x treatment combination to see relative abundance of each phylum
DOI: 10.5061/dryad.7535k/35
title: alpha

description: R code: statistical analysis (ANOVA) on collated alpha diversity metrics (phylogenetic diversity, richness, simpson's evenness, and simpson's diversity) calculated for 100 rarefaction tables.
DOI: 10.5061/dryad.7535k/36
title: dbRDA_bact

description: R code: dbRDA and ordination plots, performed on weighted unifrac table derived from unrarefied OTU table.
DOI: 10.5061/dryad.7535k/37
title: README

description: README file, explains all other files
DOI: 10.5061/dryad.7m6kg/5
title: Fig. 1e: ROM 60133 – Nectocaris pteryx from the Burgess Shale

description: Heavily decayed specimen, no detail visible.
DOI: 10.5061/dryad.7m6kg/6
title: Fig. 2a: Elemental distribution in Nectocaris pteryx, ROM 60079

description: Pixel brightness in elemental maps corresponds to elemental abundance.  Scale bars: 1 mm.
DOI: 10.5061/dryad.7np24/1
title: QnemoPajkovic2014
DOI: 10.5061/dryad.9sj49/3
title: Typhlichtys

description: File includes all raw data files and all TDT BioSig worksheets from auditory evoked potentials on all Typhlichtys trials
DOI: 10.5061/dryad.bn281/3
title: aligned loci for introgression analyses: min4_wo.readloci.txt

description: aligned RADseq loci in readable format produced by pyRAD and used as input for introgression analyses
DOI: 10.5061/dryad.bn281/6
title: Table_S3: D-statistic introgression results

description: four taxon D-statistic and five-taxon partitioned D-statistic results testing introgression on simulated and empirical data
DOI: 10.5061/dryad.f1b56/1
title: Benson 2012 pelycosaur data

description: A ZIP file containing three files: "Benson 2012 pelycosaurs.dat" is a morphological data matrix in nexus format; "Benson 2012 taxon list.txt" is a tab-delimited text file of the taxon list and data sources included in the data matrix; "Benson 2012 character list.txt" is an annotated character list that accompanies the data matrix. Full reference list and museum abbreviations can be found in the published article.
DOI: 10.5061/dryad.f76f3/1
title: Hinesetal_BMCGenomics_fulldatainfo

description: This file includes accessory information on each transcript contig used from the associated microarray study, including annotation results from various analyses, mean values across probes for that gene across the tested conditions, and significance across the variety of statistical analyses performed. By column this dataset includes: | Transcript ID – The identifications assigned to each transcript on the array. These IDs are referenced in the text and sequences for each contig are available at . | Blast2Go Annotation – Annotation term assigned during the Blast2Go analysis of these transcripts. | Flybase Gene ID and Flybase Annotation Abbr. – The gene ID the contig blasted to in Flybase and the name assigned to that gene. | Manual Anno Flybase Gene ID and Manual Anno Flybase Anno Abbr. – Flybase gene identifications and terms for genes that did not hit to Flybase with the contig sequence but were whose identity were determined manually using various parameters outlined in the manuscript. | Significant for Hindwing, Significant for Forewing – If an ID is listed, that gene was significant in either the hindwing or forewing analyses. | Lsmean columns – These provide the mean expression across probes across each array condition, including in the title Race, Stage, and (for forewings) Wing Section. | -log10(p-value) columns– These provide the p-values from ANOVAs for the two listed pairwise comparisons of those Lsmeans | Significant Index columns – Indicate whether p-values of various pairwise comparisons were significant (1) or not (0). | Columns FR – GT- IDs are listed where significant differences were found with various analyses, described in the manuscript. | Columns GU – HM – These refer to the genes that are differentially expressed in an ANOVA along the proximal-distal forewing axis and the significance columns refer to whether there was significance for each of the wing section comparisons. F1 is the basal section, F2 is the medial section, and F3 is the apical section.
DOI: 10.5061/dryad.h02b3/1
title: Assembly of 454 reads from the brain

description: Assembly of the 454 reads from the brains of Salmo salar parr
DOI: 10.5061/dryad.h02b3/2
title: Assembly of 454 reads from olfactory epithelium

description: Assembly of 454 reads from olfactory epithelium from Salmo salar at the parr stage
DOI: 10.5061/dryad.h02b3/3
title: Assembly of 454 reads from pituitary gland

description: Assembly of 454 reads from pituitary gland of Salmo salar at the parr stage
DOI: 10.5061/dryad.h02b3/4
title: Assembly of 454 reads from all tissues

description: Assembly of 454 reads from brain, pituitary and olfactory epithelium of Salmo salar, at the parr stage.
DOI: 10.5061/dryad.jr08b/1
title: C_atl_RADseq_de_novo_assembly

description: Species: Cedrus atlantica ManettiNumber of individuals: one single adult individual coming from the Luberon forest(43°47' N / 5°12' E, France) Plant tissue: needles (diploid)Sequencing method: Restriction site Associated DNA sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp)Data description: 66,656 contigs generated by de novo assemblyAssembly tool: Velvet 1.2.06 (Zerbino & Birney 2008)
DOI: 10.5061/dryad.jr08b/2
title: C_atl_mRNAseq_de_novo_assembly

description: Species: Cedrus atlantica ManettiNumber of indiivudals: one single 2-year-old seedling that originated from the the Luberon forest (43°47' N / 5°12' E, France) and was grown in a greenhouse in a potPlant tissues: needles and roots (diploid)Sequencing method: transcriptome sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp)Data description: 130,184 contigs generated by de novo assemblyAssembly tool: CLC Genomics Workbench 4.8 (CLC bio, Cambridge, MA)
DOI: 10.5061/dryad.m466f/2
title: apomixis_analysis_111211

description: "apomixis_analysis_111211.R" is a text file of R code for the analysis of reproductive mode. It was created in Emacs Speaks Statistics but can be opened in any text editor. When executed in R, the working directory will need to contain the files in this data archive.
DOI: 10.5061/dryad.m466f/3
title: apomixis_genotypes_110218

description: This is a tab-delimited text file in the format produced by Applied Biosystems GeneMapper software version 3.7.  Each sample*locus genotype is represented in one row.  The "Sample Name" column gives names of samples that directly correspond to those used in "apomixis_samples_110218.csv".  The "Marker" column indicates the microsatellite marker.  The "Panel" column indicates groups of markers that were run simultaneously on the ABI3100 capillary sequencer.  The "Dye" column indicates the fluorescent tag used to detect the PCR fragments: Y for NED, G for HEX, and B for FAM.  The eight "Allele" columns contain the names of all alleles detected for each genotype.  Cells are left blank if fewer than eight alleles were detected.  The "Height" columns indicate the height of the peak representing each allele, and the "Size" columns indicate the exact size of the DNA fragment as calculated by GeneMapper.  A value of "TRUE" in the "AE" column indicates that the genotype was manually edited in GeneMapper, although all genotypes were visually inspected.  The R package "polysat" can read this file directly, and will use the "Sample Name", "Marker", and "Allele" columns, and will ignore all other columns.
DOI: 10.5061/dryad.m466f/4
title: apomixis_samples_110218

description: This file contains four columns of information regarding the parent plants, seeds, and seedlings that were genotyped for the study to determine the reproductive mode of the hybrids.  The "Sample Name" column lists the names of the samples as they were used in analysis.  The names of the parents correspond to the wells that they were in on the DNA dilution plates from the hybridization study.  The formatting of the names of seed and seedling samples vary only because different researchers were working on the project over a long period.  The "Parent clone" indicates the species or hybrid type from which seeds were collected, and each unique entry in this column corresponds to one clone.  The "Type" column indicates whether the sample was the original parent, a seed embryo, or a seedling.  The "DNA extraction" column indicates whether the DNA was extracted with a routine CTAB protocol or with a Zymo ZR Plant/Seed DNA Micro kit.
DOI: 10.5061/dryad.n022p/1
title: Parental behaviour and offspring measures
DOI: 10.5061/dryad.q2409/2
title: Supplementary files 1-15
DOI: 10.5061/dryad.qq846/1
title: rain.phylo.labeled.relabeled.concat

description: Nexus file used to generate phylogeny.
DOI: 10.5061/dryad.qq846/2
title: rain.phylo.labeled.005

description: XML file used in the BEAST molecular clock analysis.
DOI: 10.5061/dryad.rf25h/1
title: Microsatellite data

description: Microsatellite data in Excel file. Locus names are in the first row. Alleles are in separate columns. Allele sizes are the sizes of the raw PCR products. Question marks (?) indicate missing data. Specimens are in first column with letters identifying population and numbers identifying specimens. Population codes are as follows: JimA is the anadromous population in Jim Lake, MudA is the anadromous population in Mud Lake, RS is Rabbit Slough, JimR is the resident population in Jim Lake, MudR is the resident population in Mud Lake, MudR03 is the resident population from Mud Lake collected in 2003, Gull is Gull Lake, MDCrk is Meadow Creek, Was is Wasilla Lake, and Tern is Tern Lake.
DOI: 10.5061/dryad.rf25h/2
title: Structure_Indiv_Assignm_Results

description: Individual assignment results from the STRUCTURE analysis performed on all samples and the analysis performed using only the Jim Creek drainage anadromous and resident samples based on genetic data only. Numbers are individual q values for membership in each cluster across ten independent simulations pooled in CLUMPP. %M is the percentage of microsatellite data missing for each individual. An is the anadromous cluster, JRes is the Jim Creek drainage resident cluster, MatSu is the Mat-Su Valley cluster, and Kenai is the Kenai cluster. An2 and JRes2 are the anadromous and Jim Creek drainage resident clusters in the analysis that included only the Jim Creek drainage populations.
DOI: 10.5061/dryad.s7c52/3
title: Microsat_Genotypes

description: Microsatellite data used in the paper "Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth (Parasemia plantaginis)" by Galarza et al. The first line indicates the name of the microsatellite, with alleles coded in a two-coloumn format. Missing data is represented by "-9". Each line represents one sample's multilocus genotype starting with the sample name. The name is composed of the region, the colour morph (Y=yellow, W=white), and the year of collection (09=2009, 10=2010, 11=2011)
DOI: 10.5061/dryad.sd116/1
title: data

description: all the tables and figures
DOI: 10.5061/dryad.sr4rm/2
title: Germination Data

description: Per run germination data for a bluebunch wheatgrass genecology study conducted in 2007-2008. UID = for each germination run. SITE = garden site: CF = Central Ferry, WA; LP = Lucky Peak Nursery, ID; PU = Pullman, WA. POP = population ID. FAM = maternal family within population. Description of trait values can be found in the associated paper.
DOI: 10.5061/dryad.td20f/2
title: Raster file used for ecological niche modeling

description: Raster files used for ecological niche modeling File 1: 'araptus.curr.asc' Timescale: Present-day, class: RasterLaye, dimensions: 960, 720, 691200 (nrow, ncol, ncell), resolution: 0.008333, 0.008333 (x, y), extentL-115, -109.0002, 22, 29.99968 (xmin, xmax, ymin, ymax). File 2: 'araptus.lgm.asc' Timescale: Last Glacial Maximum, class: RasterLayer, dimensions: 960, 720, 691200 (nrow, ncol, ncell), resolution: 0.008333, 0.008333 (x, y), extent: -115, -109.0002, 22, 29.99968 (xmin, xmax, ymin, ymax)
DOI: 10.5061/dryad.v1ss7/1
title: Kahilainen_et_al_Calopteryx_data

description: The data package includes two different folders containing a total of three datafiles, each of which is accompanied by detailed information on the provided data in a ReadMe file. Folder: Genotypes contains two tab delimited txt-files containing the diploid microsatellite genotypes for 567 Calopteryx splendens and 1401 C. virgo individuals (collected from 18 and 40 sub-populations, for C. splendens and c. virgo, respectively). Folder: Locality_data contains a single tab delimited txt-file including information on the sampling localities (i.e. sub-populations). Data provided by: Kahilainen A., Keränen I., Knott K.E.K., Kuitunen K. & Kotiaho J. S. Institution: University of Jyvaskyla, Department of Biological and Environmental Science, P.O. Box 35, FI-40014, University of Jyvaskyla, Finland.
DOI: 10.5061/dryad.v3t23/1
title: Tseng-Myers-data

description: This is an excel file of the data used to generate the main findings of the paper Tseng & Myers 2014 PLoS One paper.  5 columns, 156 rows.
DOI: 10.5061/dryad.vb073/2
title: Dryad_buechel et al
DOI: 10.7925/drs1.ucdlib_32005
title: 13 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32007
title: 11 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1913.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32009
title: 12 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1913.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32011
title: 15 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 183
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32013
title: 14 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32015
title: 15 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1916.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32017
title: 17 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32019
title: 17 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32021
title: 18 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1914.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.16737/11
title: RAxML_28S_Richart&Hedin

description: 28S RAxML gene tree in Newick tree format with bootstrap values.
DOI: 10.5061/dryad.16737/15
title: RAxML_Wnt2_Richart&Hedin

description: WNT2 RAxML gene tree in Newick tree format with bootstrap values.
DOI: 10.5061/dryad.16737/9
title: Wnt2_Richart&Hedin_infile.nex.con

description: WNT2 consensus tree from Bayesian analysis.  5 Dyspnoi outgroup, 11 Acuclavella ingroup sequences.
DOI: 10.5061/dryad.1779g/1
title: R and Matlab code for Holland and Christie 2013

description: Contains R and Matlab functions for simulating and measuring the changes in the width of depth-defined zones during changes in sea level
DOI: 10.5061/dryad.17fj8/1
title: Genbank Accession Numbers

description: The taxa included in the phylogenetic analyses for each of the six clades with Genbank accession numbers for all loci. Outgroup taxa are marked with an asterisk.
DOI: 10.5061/dryad.17fj8/2
title: EFN Character Matrix

description: Presence or absence character matrix of extrafloral nectaries for the six clades used in the study
DOI: 10.5061/dryad.17fj8/3
title: MCC_Tree_Files
DOI: 10.5061/dryad.17fj8/4
title: R_Scripts
DOI: 10.5061/dryad.1q9d0/1
title: Data from laboratory and mesocosm experiments and field

description: File includes data from mesocosm experiment, laboratory experiment, and field observations
DOI: 10.5061/dryad.270sf/1
title: Reproductive traits and body sizes of frogs (Amphibia, Anura)

description: Dataset for 718 species of 38 anuran families included in this study. Male and female snout-vent lengths (SVL), number of eggs per clutch (N eggs/clutch), breeding pattern and evidence of territoriality were taken from the literature. Complete references in alphabetical order are given in the second sheet.
DOI: 10.5061/dryad.3sn4t/1
title: all data - from micrographs to spectra

description: Please refer to the ReadMe file for more information.
DOI: 10.5061/dryad.3v0q8/1
title: Data from: Reward context determines risky choice in pigeons and humans

description: The data are compressed in a .zip format containing two comma separated (.csv) files. One file contains data from the human subjects and the other contains the data from the pigeon subjects. The files are labelled "human_data.csv" and "pigeon_data.csv", respectively, and are both in a spreadsheet format. The human subject data was sampled from University of Alberta introductory psychology students participating for course credit and a cash bonus. All human data was presented and scored using E-Prime 2.0 Professional Software. The pigeon subject data was scored by hand using closed circuit recorded video. The column labelled "Notes" corresponds to additional information provided by the various volunteer research assistants who participated in the running and scoring of the pigeon subjects.