cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qcbfy8
title: Occurrence Download

description: A dataset containing 7789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is CABI Bioscience Fungus Collection",
 "TaxonKey is Alternaria Nees ex Wallroth, 1816"
 ]
}

 The dataset includes 7789 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004073-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10776853
title: AbSplice-DNA (hg19)

description: AbSplice-DNA predicts the probability that a variant causes aberrant splicing in a given tissue. See the publication: https://www.nature.com/articles/s41588-023-01373-3.Here, we provide precomputed AbSplice-DNA scores for 49 human tissues and all possible SNVs genome-wide for hg19. This version contains 19,810 protein coding genes.

The folder 'AbSplice_DNA_hg19_snvs' contains all scores.The folder 'AbSplice_DNA_hg19_snvs_high_scores' contains scores above 3 different cutoffs, which have approximately the same recalls as the high, medium and low cutoffs of SpliceAI: 



high cutoff (0.2),

medium cutoff (0.05),

low cutoff (0.01).


AbSplice scores are tissue-specific. In case users require a single score we recommend to use the maximum AbSplice score across tissues.

AbSplice-DNA scores can be computed from custom VCF files (including indels) with the python package 'absplice': https://github.com/gagneurlab/absplice

The uploaded files contain the following columns (for longer description see README of github repository of AbSplice):



Genomic coordinates of the variant:



chrom: Chromosome

pos: genomic position

ref: reference allele

alt: alternative allele

gene_id: Ensembl GeneID



AbSplice_DNA_{tissue}: AbSplice score for the given tissue

delta_logit_psi_{tissue}: MMSplice + SpliceMap score for a given tissue

delta_psi_{tissue}: MMSplice + SpliceMap + Ψ_ref score for a given tissue

splice_site_is_expressed_{tissue}: binary feature indicating if a splice site in the vicinity of the variant is expressed for a given tissue

delta_score: SpliceAI Delta score (maximum of Delta score (acceptor/donor gain/loss))

AbSplice_DNA_max: maximum AbSplice score across tissues for the given variant (this score is only provided in the files of the folder 'AbSplice_DNA_hg19_snvs_high_scores')


This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.3886/e133281v1-172744
title: Data and code for: "The United States of Europe: A gravity model evaluation of the four freedoms"

description: In this essay, we ask if Europe is approaching the levels of economic integration in terms of these four freedoms found between the United States of America. We report here a body of quantitative evidence suggesting that by several important metrics, European states have matched or surpassed the levels of openness prevailing between the 50 states of the United States. Furthermore, we find that increased integration within Europe has come from lower intra-European barriers, rather than the rise of a "Fortress Europe'' excluding external flows.
DOI: 10.5281/zenodo.10776852
title: AbSplice-DNA (hg19)

description: AbSplice-DNA predicts the probability that a variant causes aberrant splicing in a given tissue. See the publication: https://www.nature.com/articles/s41588-023-01373-3.Here, we provide precomputed AbSplice-DNA scores for 49 human tissues and all possible SNVs genome-wide for hg19. This version contains 19,814 protein coding genes.

The folder 'AbSplice_DNA_hg19_snvs' contains all scores.The folder 'AbSplice_DNA_hg19_snvs_high_scores' contains scores above 3 different cutoffs, which have approximately the same recalls as the high, medium and low cutoffs of SpliceAI: 



high cutoff (0.2),

medium cutoff (0.05),

low cutoff (0.01).


AbSplice scores are tissue-specific. In case users require a single score we recommend to use the maximum AbSplice score across tissues.

AbSplice-DNA scores can be computed from custom VCF files (including indels) with the python package 'absplice': https://github.com/gagneurlab/absplice

The uploaded files contain the following columns (for longer description see README of github repository of AbSplice):



Genomic coordinates of the variant:



chrom: Chromosome

pos: genomic position

ref: reference allele

alt: alternative allele

gene_id: Ensembl GeneID



AbSplice_DNA_{tissue}: AbSplice score for the given tissue

delta_logit_psi_{tissue}: MMSplice + SpliceMap score for a given tissue

delta_psi_{tissue}: MMSplice + SpliceMap + Ψ_ref score for a given tissue

splice_site_is_expressed_{tissue}: binary feature indicating if a splice site in the vicinity of the variant is expressed for a given tissue

delta_score: SpliceAI Delta score (maximum of Delta score (acceptor/donor gain/loss))

AbSplice_DNA_max: maximum AbSplice score across tissues for the given variant (this score is only provided in the files of the folder 'AbSplice_DNA_hg19_snvs_high_scores')


This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.5281/zenodo.15097138
title: AbSplice-DNA (hg19)

description: AbSplice-DNA predicts the probability that a variant causes aberrant splicing in a given tissue. See the publication: https://www.nature.com/articles/s41588-023-01373-3.Here, we provide precomputed AbSplice-DNA scores for 49 human tissues and all possible SNVs genome-wide for hg19. This version contains 19,814 protein coding genes.

The folder 'AbSplice_DNA_hg19_snvs' contains all scores.The folder 'AbSplice_DNA_hg19_snvs_high_scores' contains scores above 3 different cutoffs, which have approximately the same recalls as the high, medium and low cutoffs of SpliceAI: 



high cutoff (0.2),

medium cutoff (0.05),

low cutoff (0.01).


AbSplice scores are tissue-specific. In case users require a single score we recommend to use the maximum AbSplice score across tissues.

AbSplice-DNA scores can be computed from custom VCF files (including indels) with the python package 'absplice': https://github.com/gagneurlab/absplice

The uploaded files contain the following columns (for longer description see README of github repository of AbSplice):



Genomic coordinates of the variant:



chrom: Chromosome

pos: genomic position

ref: reference allele

alt: alternative allele

gene_id: Ensembl GeneID



AbSplice_DNA_{tissue}: AbSplice score for the given tissue

delta_logit_psi_{tissue}: MMSplice + SpliceMap score for a given tissue

delta_psi_{tissue}: MMSplice + SpliceMap + Ψ_ref score for a given tissue

splice_site_is_expressed_{tissue}: binary feature indicating if a splice site in the vicinity of the variant is expressed for a given tissue

delta_score: SpliceAI Delta score (maximum of Delta score (acceptor/donor gain/loss))

AbSplice_DNA_max: maximum AbSplice score across tissues for the given variant (this score is only provided in the files of the folder 'AbSplice_DNA_hg19_snvs_high_scores')


This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.17632/xmzpz64z9w.1
title: 10.1186/s12967-024-05006-z

description: raw data of "Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions" doi 10.1186/s12967-024-05006-z
DOI: 10.15468/dl.zzgmst
title: Occurrence Download

description: A dataset containing 170465 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bell Museum lichens"
 ]
}

 The dataset includes 170465 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004069-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4wkj9
title: Occurrence Download

description: A dataset containing 88813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2020-2025"
 ]
}

 The dataset includes 88813 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004020-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ct7wdpx69j.1
title: Black Hole information Paradox: CUIP‘s resolution through dimensional information compression

description: This paper introduces a novel perspective on black holes as natural instruments of dimensional reduction. Within this framework, black holes are not merely astrophysical singularities, but dynamic structures that compress and project higher-dimensional information into lower-dimensional states. By analyzing the entropy scaling, information density, and horizon dynamics, this work proposes that black holes serve as essential mechanisms for maintaining dimensional balance in complex systems. This reinterpretation offers new insights into the information paradox, holography, and the possible role of black holes in future models of dimensional evolution.
DOI: 10.15468/dl.xtr2a4
title: Occurrence Download

description: A dataset containing 8133593 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1950-2025"
 ]
}

 The dataset includes 8133593 records from 2373 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004064-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8y3ky
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptilotrichum baldaccii var. markgrafii O.E.Schulz ex Markgr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053331-220831081235567/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc112026203
title: Cuneiform Tablet 1913.14.1508, Spurlock 1913.14.1508

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1508; CDLI P421360 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (5Y 9/1.5) Moderate Yellowish Pink (5YR 7/4) Dark Gray (N 4/ 12.0% R) ❧ [Physical Object Note:] 5 x 2.9 x 1.7 cm (26g)
DOI: 10.15468/dl.wc849r
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies concolor var. concolor"
 ]
}

 The dataset includes 36 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061960-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8rbnr
title: Occurrence Download

description: A dataset containing 4223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphodon naevius (Dumont, 1818)"
 ]
}

 The dataset includes 4223 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057340-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc1sto1686194
title: InscriptiFact -- an image database of inscriptions and artifacts
DOI: 10.15468/dl.6uqj6p
title: Occurrence Download

description: A dataset containing 65338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonatum verticillatum (L.) All.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65338 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053330-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wv725n
title: Occurrence Download

description: A dataset containing 8052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Bombus rufocinctus Cresson, 1863",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8052 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077322-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111324452
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.3fm2b6
title: Occurrence Download

description: A dataset containing 3247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphotrigon megacephalum (Swainson, 1835)"
 ]
}

 The dataset includes 3247 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057342-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kbdba
title: Occurrence Download

description: A dataset containing 2152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pluchea sagittalis (Lam.) Cabrera"
 ]
}

 The dataset includes 2152 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053909-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drqa7v
title: Occurrence Download

description: A dataset containing 1336 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies religiosa (Kunth) Schltdl. & Cham."
 ]
}

 The dataset includes 1336 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061964-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayh4h8
title: Occurrence Download

description: A dataset containing 15547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cervus canadensis Erxleben, 1777",
 "Year 1800-2022"
 ]
}

 The dataset includes 15547 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053361-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111324520
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.jde776
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fibigia tabriziana Ranjbar & Karami"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053337-220831081235567/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc111324480
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.pu9xmu
title: Occurrence Download

description: A dataset containing 28244 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphastos vitellinus M.H.K.Lichtenstein, 1823"
 ]
}

 The dataset includes 28244 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057327-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn825q
title: Occurrence Download

description: A dataset containing 13401 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setaria italica (L.) P.Beauv."
 ]
}

 The dataset includes 13401 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077333-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6sv4j9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clypeola pyrenaica Bordere ex Durieu"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053350-220831081235567/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc111324524
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.5hfxtm
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "TaxonKey is Epilobium ciliatum var. ciliatum"
 ]
}

 The dataset includes 126 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061975-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk3w7q
title: Occurrence Download

description: A dataset containing 3747 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhopias gularis (Spix, 1825)"
 ]
}

 The dataset includes 3747 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057343-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111324454
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.hcd9ke
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moringua raitaborua (Hamilton, 1822)"
 ]
}

 The dataset includes 64 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053345-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3crgje
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Costa Rica",
 "TaxonKey is Welfia regia H.Wendl."
 ]
}

 The dataset includes 106 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077339-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029880
title: Cuneiform Tablet 1913.14.1521, Spurlock 1913.14.1521

description: [Text Description:] Document concerning barley ❧ [Text or Publication Number Note:] Spurlock 1913.14.1521; CDLI P421373 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) ❧ [Physical Object Note:] 5.3 x 4.1 x 2.2 cm (47 g)
DOI: 10.15468/dl.4umdrs
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "TaxonKey is Potamogeton nodosus Poir."
 ]
}

 The dataset includes 348 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061978-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r4jb5
title: Occurrence Download

description: A dataset containing 970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.64723 -0.75579,-57.35277 -0.75579,-57.35277 13.75579,-93.64723 13.75579,-93.64723 -0.75579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prochilodus magdalenae Steindachner, 1879"
 ]
}

 The dataset includes 970 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094071-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029863
title: Cuneiform Tablet 1913.14.1520, Spurlock 1913.14.1520

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1520; CDLI P421372 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1.5) ❧ [Physical Object Note:] 4.4 x 2.9 x 1.7 cm (19 g)
DOI: 10.15468/dl.j9uavn
title: Occurrence Download

description: A dataset containing 7129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tetradiclidaceae)"
 ]
}

 The dataset includes 7129 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162256-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.