cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.807543
title: Phasta-Chef One And Four Process In-Memory Dambreak Test Files

description: 3D dambreak phasta-chef test case files for one and four processes.

Contents:<br>
geom.smd               - Simmetrix GeomSim model with problem definition attributes<br>
mdsMesh_bz2         - 4 process mesh with 87K tets<br>
4-procs_case           - 4 process phasta case for 87K tet mesh<br>
t7p1                          - serial five million tet mesh at solver step seven<br>
1-procs_case           - serial phasta case for five million tet mesh<br>
samAdaptLoop_t7_p1.inp - phasta-chef input configuration file for serial five million tet case<br>
solver.inp                  - phSolver configuration file<br>
README                 - this file

Notes:<br>
The dambreak case was ran on a 87K tet mesh on four processes with adaptation.<br>
At the seventh solver step the mesh hit about five million elements.  

The pumi 'condense' utility was then ran:

mpirun -np 4 condense condense_t7.inp 4

to reduce the four process time step 7 case down to one process.
DOI: 10.1285/i20398573v1n1p80
title: The Principle of Laicism and Counter State-building in Turkey: Reflections on History and on the Conjuncture of Contemporary Politics

description: The principle of laicism has been one of the main pillars of the state-building process of Turkey. Laicism in Turkish context was held through incorporation of religious institutions into the state apparatus. Starting with the 1990s parties with Islamist background have gained political power and found their way into government. With some reflections on the historical evaluation of Turkish politics, this article accommodates western oriented theories of state-building suggested by prominent scholars such as Charles Tilly and Stein Rokkan, and Barkey's complimentary model of state formation for non-western societies. The key objective of this article is to scrutinize the relationship between the state and religion during the old and the new state-building processes of Turkey. This study provides systematic empirical evidence to the argument that Millennium has witnessed a well-organized counter state-building process carried on by the government of the Justice and Development Party (AKP).
DOI: 10.5281/zenodo.806752
title: Data and codes for Äspö field case

description: These codes and data sets were used to create the joint inversion results which are published in:

Ronczka M., Hellmann K., Günther T., Wisen R. and Dahlin T.;"Electric resistivity and seismic refraction tomography, a challenging joint underwater survey at Äspö Hard Rock Laboratory"; Solid Earth, 8, 671-682, 2017; doi: 10.5194/se-8-671-2017
DOI: 10.5281/zenodo.807025
title: Genomic Comparison Of Two Seagrass Species

description: The files correspond to result tables referenced in PhD thesis titled Genomic characterisation of seagrass species from two independent return to the sea events, University of Queensland, Australia (unpublished).
DOI: 10.5281/zenodo.807026
title: Genomic Comparison Of Two Seagrass Species

description: The files correspond to result tables referenced in PhD thesis titled Genomic characterisation of seagrass species from two independent return to the sea events, University of Queensland, Australia (unpublished).
DOI: 10.1285/i20398573v1n1p109
title: The World Bank as Social Environment: The Origins of Conditionality in the EU-ACP Relations

description: This article focuses on one of the most salient aspects of the EU-ACP relations, namely the conditionality of aid assistance and it traces the origins of conditionality in the influence of the neoliberal doctrine widespread within the World Bank. The analysis of the World Bank as a social environment bolstered by the use of cognitive mapping of assertions of European officials and official documents is used to appraise the functioning of the microprocesses of socialisation. Accordingly, with a structure-centred constructivist approach this article argues that the EU development policy toward the ACP countries was influenced by the conceptions and practices within the World Bank. Nevertheless, the novelty of the approach utilised here is the focus on the mechanisms of propelling of the socialised norms and doctrines rather than their content: a thorough analysis of the microprocesses of socialisation is applied to the World Bank. The acknowledgment of the origins of the conditionality, which has become typical of the EU's development policy, is crucial in order to appreciate the history and the future of the relations between the EU and its former colonies.
DOI: 10.1285/i20398573v1n1p122
title: Visa-Free Travel: Is It Working as an EU Foreign Policy Tool?
DOI: 10.1285/i20398573v1n1p93
title: The Portuguese Parliament: Blazing the Trail to the European Scrutiny Trophy?

description: This article analyses the constitutional, statutory and informal arrangements available to the Portuguese Assembly of the Republic for participation in EU decision making. The focus is on the 2006 European Scrutiny Act, the 2010 reform of the scrutiny procedures and the Barroso initiative. These developments provide a solid basis on which the Assembly's dependence on the Government can be reduced. The informal method of parliamentary scrutiny of EU affairs hitherto practised in Portugal has morphed into a document-based system. In these respects, the Portuguese Parliament no longer deserves the epithet of a laggard.
DOI: 10.5517/ccdc.csd.cc1p7bx5
title: CCDC 1556197: Experimental Crystal Structure Determination

description: Related Article: Christopher Kingsbury|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1285/i20398573v1n1p126
title: Call for special issue contributions
DOI: 10.5281/zenodo.808726
title: Crest Annotation Files

description: This dataset is a mirror of the extracted data files used for:


Lanzén A , Jørgensen SL, Huson D, Gorfer M, Grindhaug SH, Jonassen I, Øvreås L, Urich T (2012) CREST - Classification Resources for Environmental Sequence Tags, <em>PLoS ONE</em> <strong>7</strong>:e49334
DOI: 10.5281/zenodo.808727
title: Crest Annotation Files

description: This dataset is a mirror of the extracted data files used for:


Lanzén A , Jørgensen SL, Huson D, Gorfer M, Grindhaug SH, Jonassen I, Øvreås L, Urich T (2012) CREST - Classification Resources for Environmental Sequence Tags, <em>PLoS ONE</em> <strong>7</strong>:e49334
DOI: 10.5281/zenodo.807703
title: A Comparison Of Human And Mouse Protein Corona Profiles Of Functionalized Sio2 Nanocarriers

description: Proteomic evaluation of the protein corona formed on SiO2 nanoparticles with human and mouse plasma.
DOI: 10.1285/i20398573v2n1p1
title: Title Page
DOI: 10.1285/i20398573v2n1p24
title: Trajectories of the Discourse on Transnational Organized Crime: Biopolitical Wars and Global Civil Society

description: The article aims to understand how the dominant conceptualization of transnational crime legitimates non-traditional forms of warfare at the global level while itself constituting the idea of global civil society. It is argued that since this discourse defines transnational crime as a threat to global society, it makes politically viable the deployment of policing and military interventions in defence of the world population. In order to expose this, this article reconstructs the trajectories of the discourse on organized criminality. The article first analyses the emergence of the discourse in the United States during the 1950s, afterwards analysing it as an issue of transnational scope during the last two decades. Thus the aim here is to underline the importance that a phenomenon such as crime has had on the governance at a global level.
DOI: 10.1285/i20398573v2n1p3
title: Index
DOI: 10.1285/i20398573v2n1p4
title: Editorial
DOI: 10.1285/i20398573v2n1p8
title: High Stakes, Low Strategies: the European Union and the Fight against Transnational Organized Crime in State-building Missions

description: While being active in state-building operations, the European Union (EU) appears to be increasingly aware of the challenge that organized crime poses for political stability in "fragile states" located along its borders and beyond. Justice and Home Affairs has become one of the fastest-growing domains of EU action, and it has acquired an important external dimension, along with other policy ambits traditionally regarded as domestic—such as immigration, organized crime and terrorism. This article offers a brief overview of the evolution of the EU institutional framework concerned with addressing transnational organized crime. It then delves into EU foreign policy through the exploration of the EU missions to Kosovo and Guinea-Bissau, seeking to illuminate the existence of counter crime strategies. The article offers a preliminary assessment of how the post-Lisbon EU defence and foreign policy is conceptually and operationally equipped to meet the challenge posed by transnational organized crime.
DOI: 10.5281/zenodo.807702
title: A Comparison Of Human And Mouse Protein Corona Profiles Of Functionalized Sio2 Nanocarriers

description: Proteomic evaluation of the protein corona formed on SiO2 nanoparticles with human and mouse plasma.
DOI: 10.5281/zenodo.808914
title: Multilingual Bottle-Neck Feature Learning From Untranscribed Data For Track 1 In Zerospeech2017 (System 1 -- Without Vtln)

description: We investigate the extraction of bottle-neck features (BNFs) for multiple languages without access to manual transcription. Multilingual BNFs are derived from a multi-task learning deep neural network which is trained with unsupervised phoneme-like labels. The unsupervised phoneme-like labels are obtained from language-dependent Dirichlet process Gaussian mixture models separately trained on untranscribed speech of multiple languages.
DOI: 10.5281/zenodo.808915
title: Multilingual Bottle-Neck Feature Learning From Untranscribed Data For Track 1 In Zerospeech2017 (System 1 -- Without Vtln)

description: We investigate the extraction of bottle-neck features (BNFs) for multiple languages without access to manual transcription. Multilingual BNFs are derived from a multi-task learning deep neural network which is trained with unsupervised phoneme-like labels. The unsupervised phoneme-like labels are obtained from language-dependent Dirichlet process Gaussian mixture models separately trained on untranscribed speech of multiple languages.
DOI: 10.1285/i20398573v2n1p36
title: The Complexities of Narcoviolencia: Understanding the Mexican Drug Conflict as a Market of Violence

description: This article examines the categorisation and definition of the drug-linked violence which has affected Mexico since 2006. Academic and policy approaches to this conflict have largely been grouped into defining the violence as either an incidence of irregular warfare, or as a particularly virulent strain of organized crime. Arguing that these models both obscure important aspects of the situation in Mexico, and that even the applications of network theory to conflict do not account for the resilience and scope of the conflict in Mexico. Instead, this article suggests the idea of a “market of violence” defined by a large number of groups competing for resources and bordered by a series of external constraints is the most accurate framework for assessing the conflict. Having presented this idea, the article concludes by assessing how changes in the constraints of this market could undercut the rationale for drug-linked violence in Mexico.
DOI: 10.1285/i20398573v2n1p48
title: Candide, or Pessimism: Fighting Piracy and Transnational Crime in Uncharted Waters

description: While Somali pirates have been dominating the headlines in recent years, piracy and armed robbery at sea represents a widespread phenomenon throughout the world's most traveled waterways. Having a piracy problem in one's "maritime backyard" exposes the inadequacy of the coastal state's patrolling and prosecutorial capacity and adds to the incentives of criminal enterprises to operate in the area. In order to contain the threat posed by piracy, various national and international efforts at patrolling and policing the oceans, and prosecuting pirates, have been initiated—often, however, without capturing the root causes of the problem. While the UN Convention on the Law of the Sea (UNCLOS) defines specific acts of piracy, it does not include financing and other "secondary activities", which typically create and sustain piracy networks. This article argues that regarding pirate activities through the lenses of transnational organized crime may provide a more adequate basis for addressing piracy.
DOI: 10.1285/i20398573v2n1p59
title: Myths and Reality of Human Trafficking: A View from Southeast Asia
DOI: 10.5281/zenodo.571586
title: Visual Sensitivity For Luminance And Chromatic Stimuli During The Execution Of Smooth Pursuit And Saccadic Eye Movements

description: Dataset relative to the following publication:

Braun, D. I., Schütz, A. C., & Gegenfurtner, K. R. (2017). Visual sensitivity for luminance and chromatic stimuli during the execution of smooth pursuit and saccadic eye movements. Vision Research
DOI: 10.5281/zenodo.599187
title: Visual Sensitivity For Luminance And Chromatic Stimuli During The Execution Of Smooth Pursuit And Saccadic Eye Movements

description: Dataset relative to the following publication:

Braun, D. I., Schütz, A. C., & Gegenfurtner, K. R. (2017). Visual sensitivity for luminance and chromatic stimuli during the execution of smooth pursuit and saccadic eye movements. Vision Research
DOI: 10.5281/zenodo.807696
title: An Easy Way To Show Memory Color Effects

description: This dataset supplements the following article:

Witzel, C. (2016). An Easy Way to Show Memory Color Effects. i-Perception, 7(5), 1-11. doi:10.1177/2041669516663751; http://journals.sagepub.com/doi/10.1177/2041669516663751

The Excell file includes three sheets. In all sheets, rows correspond to participants, the three first columns provide sex, age, and colour deficiency (0 = colour deficient, 1 = non-deficient). The columns "memcol" provide the main data, i.e. the choice between the grey and the bluish version of the respective stimulus.

<strong>Sheet 1: Study1</strong>

Data corresponds to Figure 3: memcol1 = disk, memcol2 = banana.

<strong>Sheet 2: Study2a</strong>

Data corresponds to Figure 4: memcol1 = disk, memcol2 = banana, memcol3-6 = Mix1-4.

<strong>Sheet 3: Study2b</strong>

Data corresponds to Figure 5: memcol1-4 = Mix1-4.
description: The work was supported by ERC Advanced grant ''FEEL'' No 323674 to J.
Kevin O'Regan and by grant ''Cardinal Mechanisms of Perception'' No SFB TRR 135 from the
Deutsche Forschungsgemeinschaft.
DOI: 10.14455/isec.res.2017.213
title: SPALL REPAIR USING 3D PRINTER AND EPOXY RESIN ADHESIVE

description: The spall repair sequence currently used is as follows. The damage is removed from the heavy equipment and fresh concrete is poured into the cleaned section. The curing compound is then applied to the patching to prevent drying shrinkage or to absorb water. But this spall repair method requires many equipment and time. During the repair process, adjacent roads must be closed in order to secure a working space, often resulting in traffic congestion. According to the report of the US Department of Transportation, the depreciation can be up to $ 20,000 a day by traffic jams. The depreciation can be easily calculated up to $ 140,000 by blocking a road for seven days to repair spalls.The objective of this research is to see if the 3D printing technology can be used for repairing the spall damage on the concrete pavement. More specifically, this study investigates whether the bond line thickness will have an influence on the shear strength development when an adhesive layer is present between the spall and the 3D printed concrete segment using a simple finite element method.  In addition, this study proposes a modified test method of ASTM C882 to experimentally investigate the influence of bond line thickness on shear strength.  This is the new test method to investigate the effect of bond line thickness of epoxy-resin adhesive on shear strength when the glue applied to concrete adherend.
DOI: 10.5281/zenodo.807695
title: An Easy Way To Show Memory Color Effects

description: This dataset supplements the following article:

Witzel, C. (2016). An Easy Way to Show Memory Color Effects. i-Perception, 7(5), 1-11. doi:10.1177/2041669516663751; http://journals.sagepub.com/doi/10.1177/2041669516663751

The Excell file includes three sheets. In all sheets, rows correspond to participants, the three first columns provide sex, age, and colour deficiency (0 = colour deficient, 1 = non-deficient). The columns "memcol" provide the main data, i.e. the choice between the grey and the bluish version of the respective stimulus.

<strong>Sheet 1: Study1</strong>

Data corresponds to Figure 3: memcol1 = disk, memcol2 = banana.

<strong>Sheet 2: Study2a</strong>

Data corresponds to Figure 4: memcol1 = disk, memcol2 = banana, memcol3-6 = Mix1-4.

<strong>Sheet 3: Study2b</strong>

Data corresponds to Figure 5: memcol1-4 = Mix1-4.
description: The work was supported by ERC Advanced grant ''FEEL'' No 323674 to J.
Kevin O'Regan and by grant ''Cardinal Mechanisms of Perception'' No SFB TRR 135 from the
Deutsche Forschungsgemeinschaft.
DOI: 10.5281/zenodo.800510
title: Mri Raw Data: Rf-Spoiled Radial Flash Sequence Without Cardiac Gating And During Free Breathing

description: RF-spoiled radial FLASH sequence without cardiac gating and during free breathing<br>
Sequence parameters:<br>
TR 2.0ms<br>
TE 1.3 ms<br>
Flip angle 8°<br>
Matrix Size 128x128 (two-fold oversampling, resulting in 256 sample points for each radial spoke)<br>
Radial Spokes: 125<br>
In Plane Resolution 2mmx2mm<br>
Slice Thickness 8mm<br>
3T System<br>
32 channel body array coil, compressed to 12 virtual channels using svd based coil compression<br>
ote: This data set was acquired with a radial acquisition. The corresponding k-Space trajectory is also included (256x125 matrix k). The Non-Uniform-FFT Toolbox is needed for reconstruction of this data set.<br>
Florian Knoll (florian.knoll@tugraz.at) Date: 2.2.2011
description: Supported by the Austrian Science Fund (FWF) under grant SFB F32 (SFB "Mathematical Optimization and Applications in Biomedical Sciences")
description: {"references": ["Knoll, F., Clason, C., Bredies, K., Uecker, M. and Stollberger, R. (2012), Parallel imaging with nonlinear reconstruction using variational penalties. Magn. Reson. Med., 67: 34\u201341. doi:10.1002/mrm.22964", "Zhang, S.; Block, K.T.; Frahm, J. (2010), Magnetic resonance imaging in real time: advances using radial FLASH. Journal of Magnetic Resonance Imaging 31:101-109", "Uecker, M.; Zhang, S.; Frahm, J. (2010),\u00a0Nonlinear inverse reconstruction for real-time MRI of the human heart using undersampled radial FLASH. Magnetic Resonance in Medicine 63:1456-1462"]}
DOI: 10.5281/zenodo.800511
title: Mri Raw Data: Rf-Spoiled Radial Flash Sequence Without Cardiac Gating And During Free Breathing

description: RF-spoiled radial FLASH sequence without cardiac gating and during free breathing<br>
Sequence parameters:<br>
TR 2.0ms<br>
TE 1.3 ms<br>
Flip angle 8°<br>
Matrix Size 128x128 (two-fold oversampling, resulting in 256 sample points for each radial spoke)<br>
Radial Spokes: 125<br>
In Plane Resolution 2mmx2mm<br>
Slice Thickness 8mm<br>
3T System<br>
32 channel body array coil, compressed to 12 virtual channels using svd based coil compression<br>
ote: This data set was acquired with a radial acquisition. The corresponding k-Space trajectory is also included (256x125 matrix k). The Non-Uniform-FFT Toolbox is needed for reconstruction of this data set.<br>
Florian Knoll (florian.knoll@tugraz.at) Date: 2.2.2011
description: Supported by the Austrian Science Fund (FWF) under grant SFB F32 (SFB "Mathematical Optimization and Applications in Biomedical Sciences")
description: {"references": ["Knoll, F., Clason, C., Bredies, K., Uecker, M. and Stollberger, R. (2012), Parallel imaging with nonlinear reconstruction using variational penalties. Magn. Reson. Med., 67: 34\u201341. doi:10.1002/mrm.22964", "Zhang, S.; Block, K.T.; Frahm, J. (2010), Magnetic resonance imaging in real time: advances using radial FLASH. Journal of Magnetic Resonance Imaging 31:101-109", "Uecker, M.; Zhang, S.; Frahm, J. (2010),\u00a0Nonlinear inverse reconstruction for real-time MRI of the human heart using undersampled radial FLASH. Magnetic Resonance in Medicine 63:1456-1462"]}
DOI: 10.5281/zenodo.806864
title: Pre-Processed B-Cell Receptor Amplicon Sequencing Data From Srr1842411

description: An example dataset containing B-cell receptor (BCR) gene sequences. This dataset is intended to be used for testing software tools developed to annotate (i.e. map Variable, Diversity and Joining segments) and perform clonal analysis of BCR sequencing data.

<strong>Sequencing:</strong>

Libraries prepared using 5'RACE from PBMCs of a healthy donor. Input molecules were tagged with unique molecular identifiers (UMIs). Sequencing was ran on MiSeq , 300+300bp reads.

<strong>Contents:</strong>

The dataset contains both raw sequencing reads and high-quality consensus sequences assembled using unique molecular tagging (UMI) approach. Consensus assembly corrects for sequencing errors and eliminates sequencing artifacts.


	age_ig_s7_R1.fastq.gz and age_ig_s7_R2.fastq.gz contain raw reads
	age_ig_s7_R1.t10.cf.fastq.gz and age_ig_s7_R2.t10.cf.fastq.gz contain consensus sequences


All files contain an UMI tag sequence in their header, in form UMI:NNNN:QQQQ where N is the base character and Q is the quality character (for assembled consensuses the total number of reads is given instead of Q string).

Note that consensus sequences were assembled using only raw sequences that correspond to UMI tags supported by at least 10 sequencing reads. That means that consensus sequence files contain a subset of all UMI tags found in raw sequences. Thus, if one wants to assess software performance on raw sequencing reads using assembled consensus sequences as a high-quality data standard, raw sequencing reads should be filtered to contain only those UMI tags that are present in consensus sequence file.

<strong>Citations:</strong>

The whole dataset was used to benchmark MiXCR software and was originally referenced in Bolotin DA, et al. MiXCR: software for comprehensive adaptive immunity profiling Nature methods 12(5):380-381, 2015.

Data pre-processing was carried out using MIGEC software, Shugay M et al. Towards error-free profiling of immune repertoires. Nature Methods 11(6):653-655, 2014.

<strong>Contributors:</strong>

The dataset was generated in Prof. Chudakov lab (Adaptive Immunity Group in Masaryk University, Brno and Genomics of Adaptive Immunity Lab in Institute of Bioorganic Chemistry, Moscow). Sample preparation and sequencing was performed by Dr. Olga Britanova and Dr. Maria Turchaninova. Raw sequencing reads were pre-processed and uploaded by Dr. Mikhail Shugay.