cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3601760_d1
title: Additional file 1: of A method for extracting electronic patient record data from practice management software systems used in veterinary practice

description: Clinical Evidence Schema as text file. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3601766_d1
title: Additional file 5: of Hmga2 is necessary for Otx2-dependent exit of embryonic stem cells from the pluripotent ground state

description: Supporting data. Data values of the experiments shown in the indicated Figures (shown in the sheet name) with the statistical analysis. (XLSX 176Â kb)
DOI: 10.15468/dl.dykqhg
title: Occurrence Download

description: A dataset containing 950096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Plecoptera"
 ]
}

 The dataset includes 950096 records from 860 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032838-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601763_d2
title: Additional file 3: of 
                     matK-QR classifier: a patterns based approach for plant species identification

description: The nucleotide variable sites identify at genus level using the position probability matrix of PSSM. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3601763_d3
title: Additional file 1: of 
                     matK-QR classifier: a patterns based approach for plant species identification

description: The details of CBOL working group plant species dataset (matK and rbcL loci) used in the present study. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3601763_d5
title: Additional file 4: of 
                     matK-QR classifier: a patterns based approach for plant species identification

description: Discriminating and not discriminating species list obtained through PSSM species discrimination analysis. (XLSX 381Â kb)
DOI: 10.15468/dl.f8sy6v
title: Occurrence Download

description: A dataset containing 23837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((138 37,149 37,149 46,138 46,138 37))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mollusca"
 ]
}

 The dataset includes 23837 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032900-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crf3r6
title: Occurrence Download

description: A dataset containing 1480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pandalidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1480 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032901-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602279_d6
title: Additional file 8: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: List of 345 putative deleterious LoF variants. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3602213_d19
title: Additional file 17: Table S6. of Quantitative proteomics of the tobacco pollen tube secretome identifies novel pollen tube guidance proteins important for fertilization

description: GO terms enriched in the semi-in vivo pollen tube secretome. (XLSX 472 kb)
DOI: 10.6084/m9.figshare.c.3602279_d7
title: Additional file 9: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: Gene ontology terms significantly enriched or depleted in 345 putative deleterious LoF variants affected genes. p values were generated by Bonferroni correction for multiple tests. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3602279_d8
title: Additional file 3: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: Summary of SNP genotyping per animal using the BovineHD BeadChip. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602279_d9
title: Additional file 5: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: Gene ontology terms significantly ( p â
DOI: 10.6084/m9.figshare.c.3602279_d10
title: Additional file 10: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: List of inconsistent calls and corresponding primers used in validating by sequencing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3602318_d1
title: Additional file 11: Table S8. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene sets and associated genes that show after mTOR treatment a reversal of the change in expression detected in untreated TSC2 deletion cells (related to Fig.Â 4b). (XLSX 25.8 kb)
DOI: 10.6084/m9.figshare.c.3602279_d11
title: Additional file 7: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

description: List of LoF variants used in validating genotyping. This table also presents the list of primers used in the custom SNP genotyping assay and primers used in genotyping of frameshift indels by size determination. For frameshift indels forward primers were 5â ˛ modified with reporter dyes (dyes are indicated in the parenthesis). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3602324_d1
title: Additional file 1: of The successful accomplishment of nutritional and clinical outcomes via the implementation of a multidisciplinary nutrition support team in the neonatal intensive care unit

description: Raw_data_NST. (XLSX 2379Â kb)
DOI: 10.6084/m9.figshare.c.3602318_d2
title: Additional file 6: Table S4. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene ontology term enrichments for RNA-Seq data from differentiated TSC2 deletion cell lines and microarray data of patient SEGAs (related to Fig.Â 2f). (XLSX 27.7 kb)
DOI: 10.6084/m9.figshare.c.3602333_d1
title: MOESM1 of Vemurafenib-resistant BRAF selects alternative branch points different from its wild-type BRAF in intron 8 for RNA splicing

description: Additional file 1: Table S1. BRAF primers used in this study.
DOI: 10.6084/m9.figshare.c.3602546_d1
title: MOESM4 of Designing intracellular metabolism for production of target compounds by introducing a heterologous metabolic reaction based on a Synechosystis sp. 6803 genome-scale model

description: Additional file : Table S4. Total number of metabolic reactions added when building the SyHyMeP, and combinations of metabolic reaction pathways that satisfy them.
DOI: 10.6084/m9.figshare.c.3602546_d2
title: MOESM3 of Designing intracellular metabolism for production of target compounds by introducing a heterologous metabolic reaction based on a Synechosystis sp. 6803 genome-scale model

description: Additional file : Table S3. List of metabolites ignored when building the SyHyMeP.
DOI: 10.15468/dl.g8by54
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spongicolidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032903-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602546_d3
title: MOESM2 of Designing intracellular metabolism for production of target compounds by introducing a heterologous metabolic reaction based on a Synechosystis sp. 6803 genome-scale model

description: Additional file: Table S2. Detailed intracellular metabolic reactions that need to be activated, if the yield of succinic acid production according to the SyHyMeP is 155.
DOI: 10.6084/m9.figshare.c.3602546_d4
title: MOESM1 of Designing intracellular metabolism for production of target compounds by introducing a heterologous metabolic reaction based on a Synechosystis sp. 6803 genome-scale model

description: Additional file 1: Table S1. List of exogenous metabolic reactions linked to the SyGSM (metabolic reaction number: 1â  5).
DOI: 10.6084/m9.figshare.c.3602576_d1
title: Additional file 2: Table S1. of MiR-21 is required for efficient kidney regeneration in fish

description: Clustered differentially expressed genes after treatment of N. furzeri with gentamicin, antimir-21 orgentamicin/antimir-21. (XLSX 429 kb)
DOI: 10.6084/m9.figshare.c.3602579_d1
title: Additional file 1: of Latitude in sample handling and storage for infant faecal microbiota studies: the elephant in the room?

description: Illumina Miseq expected variation. (XLS 15 kb)
DOI: 10.6084/m9.figshare.c.3602825_d1
title: Additional file 12: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

description: A vignette for reproducing the computational analyses. (TXT 11 kb)
DOI: 10.6084/m9.figshare.c.3602834_d1
title: Additional file 2: of Lethal chondrodysplasia in a family of Holstein cattle is associated with a de novo splice site variant of COL2A1

description: Non-parametric multipoint linkage analysis output data. Z-mean values and LOD scores and their chromosome-wide error probabilities (P) along a grid of equally spaced locations (2 Mb) of all 29 autosomes. The minimum and maximum achievable values in the present linkage analyses are given in the first two rows. Chromosome-wide significant Z-mean values and LOD scores and their P-values are highlighted in green. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3602834_d2
title: Additional file 3: of Lethal chondrodysplasia in a family of Holstein cattle is associated with a de novo splice site variant of COL2A1

description: Candidate genes for chondrodysplasia. OMIM database search for genes associated with osteochondrodysplasia/chondrodysplasia and their genomic position in the cattle genome. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3602834_d3
title: Additional file 4: of Lethal chondrodysplasia in a family of Holstein cattle is associated with a de novo splice site variant of COL2A1

description: Private sequence variants of the sequenced chondrodysplasia affected calf. A total of 6054 sequence variants which were absent in 118 control genomes. Variants (n = 785) located in the linked genome regions are highlighted in green. (XLSX 370 kb)
DOI: 10.6084/m9.figshare.c.3603044_d3
title: Additional file 2: of Is protection against florivory consistent with the optimal defense hypothesis?

description: Simulated Florivory Data. # of Flowers indicates the total number of flowers, and for each of the flower removal treatments (25, 50 and 75Â %) the total number of flowers removed follows each respective column. The total pods, seeds, and viable seeds are indicated below #fruit, #seeds, and #viable seeds. (XLSX 14 kb)
DOI: 10.15468/dl.b2vqq8
title: Occurrence Download

description: A dataset containing 990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zingiber zerumbet (L.) Roscoe ex Sm."
 ]
}

 The dataset includes 990 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603059_d2
title: Additional file 2: of Saturation pulse design for quantitative myocardial T1 mapping

description: Main optimization code (MATLAB). (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3603029_d11
title: Additional file 11: of The multiple evolutionary origins of the eukaryotic N-glycosylation pathway

description: Trimmed alignments. (TXT 397Â kb)
DOI: 10.6084/m9.figshare.c.3603065_d2
title: Additional file 1: of Exogenous proteinogenic amino acids induce systemic resistance in rice

description: Raw microarray data from the leaf by root treatment with Glu. (XLSX 4942Â kb)
DOI: 10.15468/dl.pqbq62
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lithodidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 140 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032906-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603059_d4
title: Additional file 5: of Saturation pulse design for quantitative myocardial T1 mapping

description: Additional optimization code (MATLAB). (TXT 2Â kb)
DOI: 10.5281/zenodo.10258643
title: FluxFormer GPP Dataset

description: FluxFormer is a monthly upscaled GPP (unit: gC m-2 d-1) from 2001 to 2020 at 0.1-degree. This dataset is generated through the application of MVTS Transformer and ESA-CCI PFT data v2.0.8, utilizing ground truth data collected from 206 FLUXNET 2015 stations


 

Authors: Anh Phan, Hiromichi Fukui (Chubu University)

 

For any inquiries related to this dataset, please contact:

Name: Anh Phan

Email: anhphancu@gmail.com
DOI: 10.5281/zenodo.10258644
title: FluxFormer: Upscaled Global Carbon Fluxes from Eddy Covariance Data with Multivariate Timeseries Transformer

description: Description: FluxFormer is a monthly upscaled global fluxes including Gross Primary Production (GPP) and Ecosystem Respiration (RECO) from 1999 - 2019 at 0.25-degree. This dataset is generated through the application of MVTS Transformer, utilizing ground truth data collected from 206 FLUXNET 2015 stations
 
Authors: Anh Phan, Hiromichi Fukui (Chubu University)
 
For any inquiries related to this dataset, please contact:
Name: Anh Phan
Email: anhphancu@gmail.com
DOI: 10.5281/zenodo.10901950
title: FluxFormer: Upscaled Global Carbon Fluxes from Eddy Covariance Data with Multivariate Timeseries Transformer

description: Description: FluxFormer is a monthly upscaled global fluxes including Gross Primary Production (GPP) and Ecosystem Respiration (RECO) from 1999 - 2019 at 0.25-degree. This dataset is generated through the application of MVTS Transformer, utilizing ground truth data collected from 206 FLUXNET 2015 stations
 
Authors: Anh Phan, Hiromichi Fukui (Chubu University)
 
For any inquiries related to this dataset, please contact:
Name: Anh Phan
Email: anhphancu@gmail.com
DOI: 10.5281/zenodo.13949006
title: FluxFormer GPP Dataset

description: FluxFormer is a monthly upscaled GPP (unit: gC m-2 d-1) from 2001 to 2020 at 0.1-degree. This dataset is generated through the application of MVTS Transformer and ESA-CCI PFT data v2.0.8, utilizing ground truth data collected from 206 FLUXNET 2015 stations


 

Authors: Anh Phan, Hiromichi Fukui (Chubu University)

 

For any inquiries related to this dataset, please contact:

Name: Anh Phan

Email: anhphancu@gmail.com
DOI: 10.6084/m9.figshare.c.3603296_d1
title: MOESM3 of Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2

description: Additional file 3. Analysis of genes regulated by CSF2 using IPA. Shown are diseases or functions predicted to be increased or decreased as a result of CSF2 treatment for ICM (Tab 1) and TE (Tab 2) as well as transcriptional regulators functions predicted to be activated or inhibited by CSF2 in ICM (Tab 3) and TE (Tab 4). For all tabs, rows are highlighted (red, activated; green, inhibited) when the activation z-scoreÂ â ĽÂ 2.0.
DOI: 10.6084/m9.figshare.c.3603296_d2
title: MOESM1 of Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2

description: Additional file 1. Gene expression in ICM and TE as affected by CSF2. Tab 1: Gene expression in the ICM. Tab 2: Genes whose expression in the ICM was affected by CSF2 (P 1.5 or &lt;0.66 fold change). Note that genes highlighted in red (upregulated) or green (downregulated) were significantly upregulated by CSF2 after correcting for a 2 % false-discovery rate Tab 3: Gene expression in the TE. Tab 4: Genes whose expression in the TE was affected by CSF2 (P 1.5 or &lt;0.66 fold change). Coloring code is as for Tab 3. Tab 5: Genes that were regulated by CSF2 in both the ICM and TE.
DOI: 10.6084/m9.figshare.c.3603302_d1
title: Additional file 1: of Motility characteristics in the transition zone in Gastroesophageal Reflux Disease (GORD) patients

description: The percentage of BT in patients with and without TZ defect. Description of data: The dataset displayed how many patients had complete or incomplete BT in patients with or without TZ defect in different groups. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603296_d3
title: MOESM2 of Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2

description: Additional file 2. Annotation clusters of gene ontologies identified by DAVID for genes regulated by CSF2 in ICM (Tab 1) and TE (Tab 2). Only clusters having Benjamini-Hochberg adjusted P values &lt;0.05 are shown.
DOI: 10.6084/m9.figshare.c.3603458_d5
title: MOESM9 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 9: Table S6. Â  RNASeq expression data for Tetranychus urticae Antennapedia and fushi tarazu. Data taken from embryonic (embryo_techrep_#), larval (larvae_techrep_#), nymphal (nymph_techrep_#), and adult (adult_techrep_#) developmental stages, values are reads per kilobase per million mapped reads (RPKM).
DOI: 10.6084/m9.figshare.c.3603473_d2
title: Additional file 1: Table S1. of Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

description: Significant genes found in the patterns associated to the progression of MDS: A total set of 189 genes were found. These genes are included in one of the 4 patterns identified (marked in red colors in the case of the 2 increasing trends or green colors in the case of the 2 decreasing trends). The Gamma correlation factor and the adjusted p-value of such correlation are included for each gene in its pattern. (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.c.3603458_d6
title: MOESM6 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 6: Table S2. Â  Calculated spatial relationship of Hox genes.
DOI: 10.6084/m9.figshare.c.3603461_d7
title: Additional file 1: Table S1. of Identification of stromal ColXÎą1 and tumor-infiltrating lymphocytes as putative predictive markers of neoadjuvant therapy in estrogen receptor-positive/HER2-positive breast cancer

description: Patient characteristics. x indicates the case was included for the assay. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3603473_d3
title: Additional file 3: Table S3. of Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

description: Significant genes found in the patterns associated to the progression of CRC: A total set of 243 genes were included in 4 patterns: 1 increasing and 3 decreasing. Each one of the four patterns is marked in a color (red colors in the case of increasing trends or green colors in the case of decreasing trends). The Gamma correlation factor and the adjusted p-value of such correlation are included for each gene in its pattern. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3603458_d7
title: MOESM3 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 3: Table S5. Â  Number of BLAST hits, alignments, and sequences considered for conserved Hox gene-associated miRNAs in Mesobuthus, Metaseiulus, Tetranychus, and Strigamia.
DOI: 10.6084/m9.figshare.c.3603473_d4
title: Additional file 2: Table S2. of Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

description: Significant genes found in the patterns associated to the progression of AD: In total 74 genes were found as significant assigned to one of the 4Â AD patterns. The patterns are marked in red colors in the case of increasing trends or green colors in the case of decreasing trends. The Gamma correlation factor and the adjusted p-value of such correlation are included for each gene in its pattern. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3603458_d8
title: MOESM5 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 5. Muscle alignment of arthropod miRNAs mir-993, mir-10, and mir-iab-4/8. Abbreviations used as in Additional file 4: Figure S1.
DOI: 10.6084/m9.figshare.c.3603491_d2
title: MOESM1 of Differences in amino acid frequency in CagA and VacA sequences of Helicobacter pylori distinguish gastric cancer from gastric MALT lymphoma

description: Additional file 1: Table S1. Accession numbers of the cagA and vacA gene sequences.
DOI: 10.6084/m9.figshare.c.3603494_d1
title: Additional file 1: Table S1. of High prevalence of multidrug resistant Enterobacteriaceae isolated from outpatient urine samples but not the hospital environment in Bo, Sierra Leone

description: Hospital environment sampling information. Information onÂ the sources and dates of collection of hospital environmental samples. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3603458_d10
title: MOESM10 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 10: Table S3. Measurements of the size of Hox gene coding and non-coding regions.
DOI: 10.15468/dl.26un56
title: Occurrence Download

description: A dataset containing 857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepiolidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 857 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032907-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603713_d7
title: Additional file 8 of Common disease signatures from gene expression analysis in Huntingtonâ  s disease human blood and brain

description: SCA signature. In this file we include detailed information about the SCA signature, including the annotations and gene identifiers of each module that participates in this signature. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3603755_d1
title: Additional file 1: of Oral hygiene practices and their socio-demographic correlates among Nepalese adult: evidence from non communicable diseases risk factors STEPS survey Nepal 2013

description: Oral Hygiene Nepal Data. (XLSX 719 kb)
DOI: 10.6084/m9.figshare.c.3603713_d8
title: Additional file 9 of Common disease signatures from gene expression analysis in Huntingtonâ  s disease human blood and brain

description: Synapse signature. In this file we include detailed information about the synapse signature, including the annotations and gene identifiers of each module that participates in this signature. (XLS 12.5 kb)