cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.ntiueo
title: Late Bronze Age burial mound architecture in Arbulag Soum, Khövsgöl, Mongolia

description: These burial mound schematic illustrations accompany the publication: Jeong C, Wilkin S, Amgalantugs T, Bouwman A, Taylor W, Bromage S, Tsolmon S, Hagan R, Trachsel C, Grossman J, Littleton J, Makarewicz C, Krigbaum J, Burri M, Irmer F, Scott A, Davaasambuu G, Wright J, Myagmar E, Boivin N, Robbeets M, Rühli F, Krause J, Frohlich B, Hendy J, Warinner C. Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proceedings of the National Academy of Sciences USA, in review. 

All burial mound illustrations were produced by Bruno Frohlich, who retains full copyright to these illustrations. Please contact Bruno Frohlich directly for questions pertaining to copyright, citation, or use: FROHLICH@si.edu.
DOI: 10.17617/3.o5l8iu
title: Genome-wide chromatin binding of transcriptional corepressor Topless-related 1 in Arabidopsis

description: Timely and specific regulation of gene expression is critical for plant responses to environmental and developmental cues. Transcriptional coregulators have emerged as important factors in gene expression control, although they lack DNA-binding domains and the mechanisms by which they are recruited to and function at the chromatin are poorly understood. Plant Topless-related 1 (TPR1), belonging to a family of transcriptional corepressors found across eukaryotes, contributes to immunity signaling in Arabidopsis thaliana and wild tobacco. We performed chromatin immunoprecipitation and sequencing (ChIP-seq) on an Arabidopsis TPR1-GFP expressing transgenic line to characterize genome-wide TPR1-chromatin associations. The analysis revealed ~1400 genes bound by TPR1, with the majority of binding sites located at gene upstream regions. Among the TPR1 bound genes, we find not only regulators of immunity but also genes controlling growth and development. To support further analysis of TPR1-chromatin complexes and other transcriptional corepressors in plants, we provide two ways to access the processed ChIP-seq data and enable their broader use by the research community.

This collection contains
1) input-normalized ChIP-seq data in the bigwig format (TAIR10) that can be used to visualize TPR1-GFP association with chromatin in the IGV browser;

2) alignment bam and respective bai index files that should be used as input for R scripts to produce metaplots for TPR1 association with genes of interest; the respective R scripts and a guide how to use are provided in Github repository https://github.com/rittersporn/Griebel_TPR1_bioRxiv_Apr2020
DOI: 10.17617/3.j3guy0
title: Source data for "An unbiased approach elucidates variation in (S)-(+)-linalool, a context-specific mediator of a tri-trophic interaction in wild tobacco"

description: Source data for "An unbiased approach elucidates variation in (S)-(+)-linalool, a context-specific mediator of a tri-trophic interaction in wild tobacco", published in PNAS 2019.
DOI: 10.17617/3.4d
title: Supplemental Material: Relationship quality underpins pair-bond formation and subsequent reproductive performance in a long-term socially-monogamous bird

description: This repository contains the code (in R) used for the analysis presented in the manuscript: "Relationship quality underpins pair-bond formation and subsequent reproductive performance in a long-term socially-monogamous bird"
DOI: 10.17617/3.uzllli
title: Phase transition of CO ice: driving the molecular complexity on interstellar dust grains

description: This collection contains the experimental data for the manuscript titled: "Phase transition of CO ice: driving the molecular complexity on interstellar dust grains". 

This collection contains mid-infrared spectral data at a resolution of 1 cm-1. The temperature corresponding to each spectrum is marked in the "temperature" column or in the file name. The background spectrum of each experiment is taken to be the one measured right before the CO/CO2 deposition. 

There are three folders corresponding to three sets of experiments:
1. CO warm-up. RAIRS spectra of CO ice of different thicknesses during warm-up. The file is named by the thickness. The CO ices were deposited onto np-ASW at 6 K and warmed up at 0.2 K/minute. The temperature corresponding to each spectrum is marked in the "temperature" column. 
2. CO:CO2 mixture warm-up. RAIRS spectra of the mixture of 9 ML of CO and 1 ML of CO2 during warm-up. The CO:CO2 ice mixture was deposited onto np-ASW at 6 K and warmed up at 0.2 K/minute. The temperature corresponding to each spectrum is marked in the "temperature" column. 
3. CO:CO2 mixture isotherm. RAIRS spectra of the mixture of 9 ML of CO and 1 ML of CO2 deposited at 6 K and then flash heated to a target temperature to do isotherm experiments. The target temperatures are shown in the file name.
DOI: 10.17617/3.2z
title: Experimental data for the publication: Decoding Biomineralization: Interaction of a Mad10-Derived Peptide with Magnetite Thin Films

description: This digital library contains data from atomic force microscopy (AFM)-based single molecule force spectroscopy (SMFS)
DOI: 10.17617/3.rygke2
title: Source data for "Mutagenesis of odorant coreceptor Orco fully disrupts foraging but not oviposition behaviors in the hawkmoth Manduca sexta"

description: The repository includes R-studio scripts and data points used in the physiological and behavioral analysis of the Manduca sexta odorant co-receptor mutant.
DOI: 10.17617/3.7h
title: A software for measuring pore edge tension of biomembranes

description: Raw data for measuring pore edge tension of lipid membranes
DOI: 10.17617/3.nykpba
title: Solar inertial modes -- A&A Letter
DOI: 10.17617/3.1j
title: Vessel_Cognition2018_SharedTaste

description: Raw Dataset for
Vessel, E.A., Maurer, N.M., Denker, A.H., Starr, G.G. (2018). Stronger shared taste for natural aesthetic domains than for artifacts of human culture. Cognition, in press.
DOI: 10.17617/3.4u
title: Alaskan and European stickleback dissection and gene expression data and code (2017-2020)

description: Dissection and gene expression data for Piecyk et al. (2020). Abbreviations of host and parasite origins and genotypes 
denote the following: L1, ALO: Walby Lake, Alaska (61°37’N, -149°12’W); L2, ALX: Wolf Lake, Alaska (61°38’N, -149°16’W); GPS, DE: Großer Plöner See, Germany (54°08'N, 10°24'E); SKO, NO: Skogseidvatnet, Norway (60°13’N, 05°53’E)
DOI: 10.17617/3.85
title: Data Used for ACP 2021-314

description: SMPS at 60 and 320 m, Radar and GOES Satellite co-located to ATTO - each 10 minutes
DOI: 10.17617/3.hhl2pc
title: ERT-DNN

description: Dataset for the project: Learning the Output Mapping of a SoftERT-Based Tactile Sensor using MultiphysicsSimulation and Deep Neural Networks
DOI: 10.21233/4jgs-v907
title: Moosomin Lake ostracode surface sample dataset

description: Raw data for the Moosomin Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28956449
title: Python code and data.zip

description: Climate data for Germany
DOI: 10.17617/3.8t
title: Design Features to Accelerate the Higher-Order Assembly of DNA Origami on Membranes
DOI: 10.17617/3.5h
title: Alignments of modern and archaic human genomes with primate outgroup genomes in tab-separated-values format

description: Each file corresponds to a chromosome on the human reference hg19/GRCh37 and contains the bases of apes extracted from pairwise whole-genome alignments and the sequences of archaics humans from genotype calls of short read data. The columns are:
1 chromosome
2 position
3 hg19
4 pantro4
5 panpan1.1
6 gorgor3
7 ponabe2
8 rhemac3
9 Vindija33.19 (with ambiguity codes for heterozygotes)
10 Altai (with ambiguity codes for heterozygotes)
11 Denisova (with ambiguity codes for heterozygotes)
DOI: 10.17617/3.8x
title: ERICA-MS-Data StratoClim2017

description: Aerosol mass spectra data of the airborne ERICA instrument during StratoClim 2017
Observation of chemical composition of the Asian Tropopause Aerosol Layer
DOI: 10.17617/3.48
title: Raw data
DOI: 10.17617/3.32
title: Hajheidari et al 2019_Fig 6 raw data

description: Figure 6 raw data for Manuscript entitled : Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity (Current Biology 2019, in press)
DOI: 10.17617/3.27
title: Water productivity and footprint of major Brazilian rainfed crops – a spatially-explicit analysis of crop management scenarios
DOI: 10.17617/3.jiejze
title: Supporting material: Disturbance experiment

description: Contains the complete R code and data to reproduce the analyses presented in the paper "Experimental disturbances reveal group-level costs of social instability" (Proc. Roy. Soc. B, http://dx.doi.org/10.1098/rspb.2018.1577)
DOI: 10.17617/3.2j
title: Serial electron diffraction: example data and scripts

description: This collection holds a small example data set of Serial Electron Diffraction (SerialED), and a Jupyter Notebooks illustrating how to use diffractem and CrystFEL to pre-process them. Data are taken from the Granulovirus sample as described in the associated paper. Read README.md for installation instructions.
DOI: 10.17617/3.34
title: Conformational Investigations in Flexible Molecules using Orientational NMR Constraints in Combination with 3J-Couplings and NOE Distances
DOI: 10.6084/m9.figshare.28956459
title: New biostratigraphic data and U–Pb geochronology for the Middle Permian to Triassic Succession of the South Qiangtang Block, Xizang

description: U-Pb data determined from analysis of detrital zircons from sample Oct25T-02-100708-112
DOI: 10.6084/m9.figshare.28956459.v1
title: New biostratigraphic data and U–Pb geochronology for the Middle Permian to Triassic Succession of the South Qiangtang Block, Xizang

description: U-Pb data determined from analysis of detrital zircons from sample Oct25T-02-100708-112
DOI: 10.17617/3.41
title: Data: A citizen-science approach reveals long-term social network structure in an urban parrot, Cacatua galerita.

description: Data for the Journal of Animal Ecology paper "A citizen-science approach reveals long-term social network structure in an urban parrot, Cacatua galerita."
DOI: 10.17617/3.42
title: TEST-Nepenthes files

description: Metabolomics and Lipidomics LCMS runs of Nepenthes extracts corresponding to Metabolights experiment MTBLS1783 (Currently under curation)
DOI: 10.17617/3.fbbs6f
title: Area-specific mapping of binocular disparity across mouse visual cortex

description: Repository for data and Matlab codes related to the study entitled "Area-specific mapping of binocular disparity across mouse visual cortex".
DOI: 10.21233/paa7-fx63
title: LDDsite538 water chemistry dataset

description: Raw data for the LDDsite538 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.29
title: Quantum gas microscopy of Rydberg macrodimers

description: Data underlying the figures displayed in the publication
DOI: 10.17617/3.7f
title: Electrostatic Profiles of Photosynthetic Pigments

description: Computed electrostatic potentials for eight photosynthetic pigments in their ground and first excited states.
DOI: 10.17617/3.2g
title: Available data for ATTO backward trajectory and landcover study

description: Available data for paper "Land cover and its transformation in the backward trajectory footprint region of the Amazon Tall Tower Observatory", ACP, 2019, "https://doi.org/10.5194/acp-19-8425-2019".
When using the data, please refer to the paper mentioned above. If further data needed, please contact the corresponding authors.
DOI: 10.17617/3.8p
title: Force maps and corresponding voltage measurements of an ERT tactile sensor

description: This dataset contains force maps and corresponding voltage measurements obtained from the ERT tactile sensor and its multiphysics model. 

This dataset was used to train deep neural networks predicting a force map from voltage measurements of the ERT tactile sensor.
DOI: 10.17617/3.53
title: Serial Electron Diffraction Data: Hen egg-white lysozyme

description: Full dataset of hen egg-white lysozyme serial electron diffraction. For details see: Nature Communications 11, 996 (2020), and arXiv:2011.02977.
Processing of the data requires diffractem and CrystFEL. For install instructions, please visit https://github.com/robertbuecker/diffractem.
For example Jupyter notebooks, please visit https://github.com/robertbuecker/serialed-examples.
DOI: 10.17617/3.56
title: Wood-boring larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse array of plant cell wall degrading enzymes.

description: Longhorned beetles (Cerambycidae) are the most diverse group of wood-feeding (xylophagous) insects on Earth. Their larvae feed on woody tissues made up of large amounts of plant cell wall (PCW), which is notoriously recalcitrant to breakdown. To efficiently access nutrients from their food source, cerambycid larvae have to deconstruct PCW polysaccharides - like cellulose, hemicelluloses, and pectin - which requires them to possess an adequate arsenal of plant cell wall degrading enzymes (PCWDEs) present in their digestive tract. Genomic data for Cerambycidae are mostly limited to notorious forest pests and are lacking for most major taxonomic groups. Consequently, our understanding of the distribution and evolution of cerambycid PCWDEs is quite limited. We documented the numbers, kinds, and evolution of cerambycid PCWDEs by surveying larval midgut transcriptomes from 23 species representing six of the eight recognized subfamilies of Cerambycidae. Using these data, we identified 340 new putative PCWDEs belonging to ten CAZyme families, making this by far the most comprehensive comparative genomic study of cerambycid PCWDEs to date. The wide range of PCWDEs expressed by Cerambycidae should allow them to break down most PCW polysaccharides. The phylogenetic distribution of PCWDEs we observed suggests that cerambycid food sources (e.g., healthy, weakened, or decayed/rotten wood) may not have played a major role in shaping the evolutionary history of these enzyme families encoded in cerambycid genomes.
DOI: 10.17617/3.71
title: Intralocus conflicts associated with a supergene

description: In this collection we provide data and R scripts to obtain the results presented in Intralocus conflicts associated with a supergene (DOI: 10.21203/rs.3.rs-699542/v1)
DOI: 10.17617/3.qzw69l
title: Correlative three-dimensional light- and electron microscopy for long-range connectomics
DOI: 10.17617/3.twzvmv
title: Data for article "Disparity sensitivity and binocular integration in mouse visual cortex areas"

description: Repository for data and Matlab codes related to the study entitled "Disparity sensitivity and binocular integration in mouse visual cortex areas".
DOI: 10.21233/cq9c-0335
title: Rasau Jaya Peat Dome geochemistry dataset

description: Raw data for the Rasau Jaya Peat Dome geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.j0w5wt
title: Scripts

description: Scripts of bacterial composition analysis and linear regression etc.
DOI: 10.17617/3.vce807
title: In situ architecture of neuronal alpha-synuclein inclusions
DOI: 10.17617/3.4y
title: Reproduction Data for: TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields

description: This collection contains the scripts and videos used to generate the figures and tables in the paper "TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields" (http://paper.trex.run/), as well as all statistical analysis involved in achieving that.
DOI: 10.17617/3.64
title: Osmotic pressure modulates single cell cycle dynamics inducing reversible growth arrest and reactivation of human metastatic cells

description: Raw, processed and matlab application developed.
DOI: 10.17617/3.3j
title: The role of temporal neocortex in threat memory

description: The data in this repository are presented in the PhD thesis entitled "The role of temporal neocortex in threat memory".
DOI: 10.17617/3.mniwup
title: A dynamic 6,000-year genetic history of Eurasia’s Eastern Steppe

description: Supporting figures and images for "A dynamic 6,000-year genetic history of Eurasia’s Eastern Steppe"
DOI: 10.17617/3.93
title: Data for "CUC/auxin patterning of decanalized petal number in Cardamine hirsuta"

description: Raw data, confocal stacks and MorphoGraphX meshes associated with publication "CUC/auxin patterning of decanalized petal number in Cardamine hirsuta"
description: MorphoGraphX
DOI: 10.17617/3.5q
title: The ontology representation for a data set of cation-coordinated conformers of 20 proteinogenic amino acids with different protonation states
DOI: 10.17617/3.wo6jef
title: Three-dimensional Structural Interrelations between Cells, Extracellular Matrix and Mineral in Normally Mineralizing Avian Leg Tendon - 2020

description: FIB/SEM data sets
DOI: 10.17617/3.4e
title: Experimental Data for the Publication: Fortified Coiled Coils: Enhancing Mechanical Stability with Lactam or Metal Staples

description: This online data collection includes 4 subfolders with the circular dichroism, atomic force microscope (AFM) single molecule force spectroscopy (SMFS) data of the coiled coils described in the article and a folder with the Matlab code used to analyse the AFM-SMFS data.
DOI: 10.21233/r2ka-bb75
title: Swarth Moor testate amoebae surface sample dataset

description: Raw data for the Swarth Moor testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.3z
title: Experimental data for the publication: Influence of network topology on the viscoelastic properties of dynamically crosslinked hydrogels

description: This online data collection includes 4 subfolders with the rheology data of the hydrogels described in the article. Specifically, data of temperature ramps, pre-stress measurements, amplitude sweeps and frequency sweeps are included.
DOI: 10.17617/3.3x
title: The effects of cropping intensity and cropland expansion of Brazilian soybean production on green water flows
DOI: 10.17617/3.2a
title: Experimental data for the publication: Tuning Coiled Coil Stability with Histidine-Metal Coordination

description: This digital library contains data from (1) circular dichroism (CD) spectroscopy, (2) Raman spectroscopy, (3) atomic force microscopy (AFM)-based single molecule force spectroscopy (SMFS) and (4) rheology.
DOI: 10.17617/3.8g
title: A biophysical account of multiplication by a single neuron
DOI: 10.17617/3.59
title: MICRU effective cloud fractions from GOME-2A

description: This data set contains Mainz Iterative Cloud Retrieval Utilities (MICRU) effective cloud fractions retrieved from nadir reflectances measured by the Global Ozone Monitoring Instrument 2 (GOME-2) aboard MetOp-A satellite.
DOI: 10.15468/dl.b5gwpt
title: Occurrence Download

description: A dataset containing 194530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Observation)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 194530 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021454-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.8w
title: Quantum gas microscopy of Kardar-Parisi-Zhang superdiffusion

description: Data presented in the publication and code associated with numerical simulations
DOI: 10.17617/3.aliowm
title: SNspectra

description: Model SN spectra calculated with SUMO code
 from variety of papers.
DOI: 10.17617/3.5m
title: MD simulation structures of the membrane-embedded TCR - CD3 complex

description: The 6000 atomistic simulation structures in PDB format have been extracted from 120 microsecond-long simulation trajectories at the time points 0.51, 0.52, 0.53, ... 1.0 microsecond. The structures represent an equilibrated ensemble of simulation conformations.
DOI: 10.17617/3.rgjyjl
title: Dogon languages

description: Media files collected in the Dogon languages and Bangime project (http://dogonlanguages.org).
DOI: 10.21233/3bgr-mn52
title: Catahoula Lake (core CLR3) pollen dataset

description: Raw data for the Catahoula Lake (core CLR3) pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.6z
title: Supplementary data for The effect of eraser sampling for proteomic analysis on Palaeolithic bone surface microtopography

description: Unfiltered surface texture scans, surface texture templates (MountainsMap) and raw data for bayesian modeling (R and stan)
DOI: 10.17617/3.napbua
title: Meridional flow in the Sun’s convection zone is a single cell in each hemisphere
DOI: 10.17617/3.gydwtm
title: Aggregation of PolyQ35::YFP protein in Caenorhabditis elegans after 3 days

description: Acquisition: YFP, Zeiss Axiovert 200 M, camera AxioCamHR, software Axiovision
v4.7.1

&lt;img src="http://colab.mpdl.mpg.de/mw010/images/5/5e/MPIB_logo.jpg" alt="MPIBio logo"&gt;
DOI: 10.17617/3.4c
title: Multi-omics Characterization of Microbial Metabolic Processes Involved in Plant Litter Decomposition

description: A lab-sclae plant litter decomposition study targeted at elucidating metabolic interactions between microorganisms and dissolved organic matter.
DOI: 10.17617/3.38
title: Meteoric particles in the lower stratosphere: Data set

description: This data set accompanies the Manuscript "Aircraft-based observation of meteoric material in lower stratospheric aerosol particles between 15 and 68°N" by J. Schneider et al.
It includes data from the aircraft-based missions ML-CIRRUS, CAFE-Africa, StratoClim 2016, StatoClim 2017, ND-MAX/ECLIF-2
DOI: 10.17617/3.idsgrt
title: Design of biochemical pattern forming systems from minimal motifs - microscopy and additional data

description: Data accompanying the manuscript "Design of biochemical pattern forming systems from minimal motifs" submitted to eLife
DOI: 10.17617/3.94
title: Contractile stresses in collagen fibrils

description: Raw data
DOI: 10.17617/3.92
title: looming-evoked escape saccades with moving background in Drosophila HS cell recordings

description: Raw data obtained through in-vivo patch-clamp (current clamp) during tethered flight in Drosophila melanogaster. Flies were head-fixed such that the wings were able to move freely. Behavior is quantified by measuring wing stroke amplitude of the left and right wings. Recordings were done in HS (horizontal system) cells of females.
DOI: 10.17617/3.31
title: Time-Resolved Observation of Spin-Charge Deconfinement in Fermionic Hubbard Chains

description: Data and code supporting the publication in Science