cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.85zuer
title: Occurrence Download

description: A dataset containing 11031 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditaxis Vahl ex A.Juss."
 ]
}

 The dataset includes 11031 records from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203555-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axq4yw
title: Occurrence Download

description: A dataset containing 227938 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulex europaeus L."
 ]
}

 The dataset includes 227938 records from 1275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042530-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/49nc886tc2.1
title: Protection from overheating of simulated Sceloporus horridus lizards in a biosphere reserve of seasonally dry tropical forest in central Mexico

description: To determine whether in general protected areas (PAs) provide protection from overheating for the lizard populations inhabiting them, we compared the effect of a PA on vegetation cover, and in turn on the microclimate experienced by lizards, at their spatial scale and considering their thermoregulatory behaviors. Using remote sensing and a mechanistic niche model (NicheMapR) we tested whether the Sierra de Huautla Biosphere Reserve (REBIOSH) had higher vegetation cover, cooler microclimates, higher thermal safety margins (TSM), higher foraging duration, and lower metabolic rate for simulated Sceloporus horridus lizards compared to adjacent unprotected areas to the north (NAA) and south (SAA) in 1999—when the reserve was declared—and 2020. The study area is in south-central Mexico and the considered surface is mainly occupied by the seasonally dry tropical forest. Within each polygon, we randomly placed 150 sampling points to which we assign data of our study variables. The sampling points have a spatial resolution of 30 m. We characterized the vegetation cover using the normalized difference vegetation index (NDVI) * 100, that is to say, converted to a percentage. The microclimate was simulated at 3 or 120cm perch height because the latter may be cooler than the former and S. horridus moves along such interval. We calculated the TSM as the voluntary thermal maximum of the species (36.4°C) minus the mean body temperature of the simulated lizard. In the simulation, we allowed the following thermoregulatory behaviors: changing its body orientation relative to direct insolation, moving along the specified interval of shade percentage, and climbing from 3 up to 120cm perch height. Each combination of levels of perch height, year, season, and polygon had a sample size of 150 records. We compared the vegetation cover in three months of the rainy season, and the microclimate temperature, TSM, foraging duration, and metabolic rate in three months of the dry season.
Note: Data from a resubmitted research to be published in Journal of Thermal Biology.
DOI: 10.17632/49nc886tc2.2
title: Protection from overheating of simulated Sceloporus horridus lizards in a biosphere reserve of seasonally dry tropical forest in central Mexico

description: To determine whether in general protected areas provide protection from overheating for the lizard populations inhabiting them, we compared the effect of a protected area on vegetation cover, and in turn on the microclimate experienced by lizards, at their spatial scale and considering their thermoregulatory behaviors. We used remote sensing and a mechanistic niche model (NicheMapR) to test whether the Sierra de Huautla Biosphere Reserve (REBIOSH) had higher vegetation cover, cooler microclimate, higher thermal safety margin (TSM), higher foraging duration, and lower basal metabolic rate for simulated Sceloporus horridus lizards, compared to adjacent unprotected areas to the north (NAA) and south (SAA) in 1999—when the reserve was declared—and 2020—20 years after the declaration. The study area is in south-central Mexico and the considered surface is mainly occupied by seasonally dry tropical forest. Within each polygon, we randomly placed 150 sampling points from where we quantified our study variables. The sampling points have a spatial resolution of 30 m. We characterized the vegetation cover using the normalized difference vegetation index (NDVI) * 100, that is to say, converted to a percentage. We simulated the microclimate at 3cm or 120cm perch height because the latter may be cooler than the former and because S. horridus moves along such interval. We calculated the TSM as the voluntary thermal maximum of the species (36.4°C) minus the mean body temperature of the simulated lizard. In the simulation, we allowed the following thermoregulatory behaviors: changing its body orientation relative to direct insolation, moving along the specified interval of shade percentage, and climbing from 3cm up to 120cm perch height. Each combination of levels of perch height, year, season, and polygon had a sample size of 150 records. We compared the vegetation cover in three months of the rainy season, and the microclimate temperature, TSM, foraging duration, and basal metabolic rate in three months of the dry season.
Note: Data from a resubmitted research to be published in Journal of Thermal Biology.
DOI: 10.5281/zenodo.14679584
title: A review of retention time alignment methods and tools for proteomics data

description: TableS2_source_data.rar
DOI: 10.5281/zenodo.14679585
title: A review of retention time alignment methods and tools for proteomics data

description: TableS2_source_data.rar
DOI: 10.17632/rnb7hc6hdr.1
title: LDHU3_17.1310

description: RNA-binding protein | RBP30; Leishmania donovani (HU3 strain)
DOI: 10.17632/gc9zvtw5y7.1
title: LINF_210008000

description: Pentatricopeptide repeat domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8f8bsydvzm.1
title: S1PR1 VSM paper 2020

description: The following data are included in a study we published in 2021 study. We investigated the effect of a selective S1PR type 1 ligand, ozanimod, on VSM phenotype expression and autophagy in primary human brain VSM cells following acute hypoxia plus glucose deprivation (HGD; in vitro ischemic-like injury). Cells were treated with ozanimod and exposed to normoxia or HGD. Crystal violet staining, standard immunoblotting, and immunocytochemical labeling techniques assessed cellular morphology, vacuolization, phenotype, and autophagic state. We observed that HGD temporally decreased VSM cell viability and concomitantly increased vacuolization, both of which ozanimod reversed. HGD induced a simultaneous elevation and reduction in levels of pro- and anti-autophagic proteins respectfully, and ozanimod attenuated this response. Protein levels of VSM phenotypic biomarkers, smoothelin and SM22, were decreased following HGD. Furthermore, we observed an HGD-induced epithelioid and synthetic morphological appearance accompanied by disorganized cytoskeletal filaments which was rescued by ozanimod. Thus, we conclude that ozanimod, a selective S1PR1 ligand, protects against acute HGD-induced phenotypic switching and promotes cell survival, in part, by attenuating HGD-induced autophagic flux thus improving vascular patency in response to acute ischemia-like injury. Citation: Wendt et al AJP Cell 2021
DOI: 10.17632/5bfvmtfxgs.2
title: Interaction of 4-ethyl phenyl sulfate with bovine serum albumin: Experimental and molecular docking studies

description: 4-ethyl phenyl sulfate (EPS), a protein-bound uremic toxin found in serum of patients suffering from autism spectrum disorders (ASD) and chronic kidney disease (CKD). As per recent advances in the field, gut metabolites after their formation goes to blood stream crosses blood brain barrier and causes neuro related problems. Increased levels of 4-EPS in human body causes anxiety in patients and its role remains elusive. 4-EPS interacts with serum albumin in human body and thus, a model study of interaction of BSA with 4-EPS is presented in support of it. Absorption spectroscopy result demonstrated decrease in bovine serum albumin (BSA) absorption upon interaction with increasing concentration of EPS in a range from 2 µM to 100 µM. Moreover, this interaction was confirmed by the fluorescence quenching in presence of metabolite. The change in secondary structure was demonstrated by circular dichroism, synchronous fluorescence and Fourier transform infra-red spectroscopy. Docking studies reveals binding score of −5.28 Kcal mol−1, demarking that 4-EPS is involved in interaction with BSA via amino acid residues, forming the stable complex. This interaction study may be helpful in devising strategies for the treatment of chronic kidney disease and other neuro related diseases, by producing synthetic compound that competes with albumin binding sites to allow 4-EPS clearance from the body.
DOI: 10.17632/zpyp4rmb43.1
title: Zircon U-Pb age and Hf-O isotope evidence of the Taihua Complex on the southern margin of the North China Craton: Implications for its magmatic process during the early Paleoproterozoic

description: Data and Supplementary Information for Chen and others, 2024 - Zircon U-Pb age and Hf-O isotope evidence of the Taihua Complex on the southern margin of the North China Craton: Implications for its magmatic process during the early Paleoproterozoic. Accepted for publication in American Journal of Science.

Supplementary Table S1: Summary of the samples and sampling positions in this study. Supplementary Table S2: U-Pb age data for zircons of metamorphic rocks in this study. Supplementary Table S3: Zircon Lu-Hf isotopic compositions of metamorphic rocks in this study. Supplementary Table S4: Zircon O isotopes of metamorphic rocks in this study. Supplementary Table S5: Compilation of zircon U–Pb ages and Hf-O isotopic data of the North China Craton during the ~2.3–2.2 Ga.
DOI: 10.17632/t82xdzpdh8.1
title: Marine and coastal ecosystems and climate change: dataset from a public awareness survey

description: The dataset is the result of an self-administered online survey on public perceptions about climate change, the value of marine and coastal ecosystems, human impacts on them and their management. 
The survey was released in four languages, English, French, Spanish and Italian ('survey' folder). Potential respondents were provided with a participant information form, also available in four languages ('participant information form' folder).
The final dataset comprises a total of 709 respondents. The dataset contains mostly numerical coding, except text entries in 9 columns which contain responses in the language they were submitted. The corresponding codebook provides the questions in English and coding information.
DOI: 10.17632/gthcmpyc67
title: LDHU3_08.0300

description: ABC1 domain-containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/gthcmpyc67.1
title: LDHU3_08.0300

description: ABC1 domain-containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/gcy52v5cfy.1
title: LINF_300037300

description: Meiosis-specific nuclear structural protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bw8xd29td4.1
title: LINF_050005700

description: Rrp15
Leishmania infantum (strain JPCM5)
DOI: 10.17632/79vtb857mk.1
title: Impact of Insulin-like growth factor-1 (IGF-1) on the aspect ratio and gene expression of rabbit Achilles tenocytes

description: We present data on the aspect ratio of rabbit Achilles tenocytes in vitro, based on measuring width and length of the cells, when stimulated with 1, 10 or 100 ng/mL IGF-1 supplementation to culture medium against corresponding cell cultures without IGF-1 supplementation for 3 days.

Furthermore, we present for two rabbit donors the impact of 0.1, 1 and 10 ng/mL IGF-1 supplementation to Achilles tenocytes in vitro and of 1 ng/mL IGF-1 that was released from an emulsion electrospun mesh with incorporated IGF-1 to test if the released IGF-1 was still bioactive. Gene expression of target genes collagen I, ki67 and tenomodulin are presented; the data were normalized to gene expression of corresponding cell culture without IGF-1 supplementation.
DOI: 10.17632/dp5jgrkd6k.1
title: Photoacoustic vascular image dataset

description: We used the OR-PAM system established by our research group to conduct animal experiments on mouse ears and obtained vessel data for microvessel extraction. This dataset has a total of 69 images, 48 of which are used for training and validation, and 21 for testing. All experimental animal procedures were carried out in compliance with protocols approved by the Animal Studies Committee of the Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences.
DOI: 10.17632/dp5jgrkd6k.2
title: Photoacoustic vascular image dataset

description: We used the OR-PAM system established by our research group to conduct animal experiments on mouse ears and obtained normal vessel data and tumor vessel data for microvessel segmentation. Normal vessel dataset has a total of 69 images, 48 of which are used for training and validation, and 21 for testing. All experimental animal procedures were carried out in compliance with protocols approved by the Animal Studies Committee of the Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences.
DOI: 10.17632/ftdyxrr3c5.1
title: DronePropA: Motion Trajectories Dataset for Commercial Drones with Defective Propellers

description: This data article introduces a comprehensive dataset composed of motion trajectories and flight logs of 130 experimental indoor flights. The faulty propellers involve three fault types for all trajectories: an edge cut, a crack, and a surface cut. In addition, there are three fault severity levels for each type. The first trajectory is a cross shape, where the drone moves back and forth along the diagonals of a 1x1m square. The second trajectory is square-shaped, with the drone following the four edges of a 1x1m square. In the third trajectory, the drone ascends in increments of 0.2m from an altitude of 0.2m to 0.8m, while in the fourth, it climbs directly from 0.2m to 0.8m. Finally, the fifth trajectory involves a yawing maneuver, with the drone rotating by 45, -45, 90, and -90 degrees. The main experiments are conducted on one drone, covering all nine combinations of fault types and severity levels, as well as the healthy condition, at two maximum translational and yawing speeds respectively: (0.33 m/s, 0.52 rad/s) and (2.00 m/s, 3.14 rad/s). Each healthy case is repeated three times. Additionally, two other drones in healthy condition are tested across all trajectories at the maximum speed of (2.00 m/s, 3.14 rad/s). DronePropA is the first batch of flight tests, and additional batches will be published for outdoor conditions and additional fault types.
DOI: 10.15468/dl.j5nu9v
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentamerismus taxi (Haller, 1877)"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000071-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8n7pztdcmy.1
title: LDHU3_17.1420

description: META domain containing protein | META1; Leishmania donovani (HU3 strain)
DOI: 10.17632/jdrx42jds9.1
title: Comparison of Random Forest and LandTrendr Algorithms for Eucalyptus Area Identification in the Landsat Temporal Series (1985 to 2020)

description: Data used in the development of the research entitled: "Comparison of Random Forest and LandTrendr Algorithms for Eucalyptus Area Identification in the Landsat Temporal Series (1985 to 2020)"
DOI: 10.17632/bzcfswd5tc.1
title: Documento Diplomado Scimago 2

description: Documentos de las clases del Diplomado en Investigación.
DOI: 10.17632/t8f52c7ysx.1
title: Experimental evidence of D-glutamate racemase activity in the uncultivated CPR bacterium Saccharimonas aalborgensis

description: ORIGINAL AND RAW DATA associated with the article by Peñalver et al. "Experimental evidence of D-glutamate racemase activity in the uncultivated CPR bacterium Saccharimonas aalborgensis". 
In this study a glutamate (Glu) racemate from an uncultivated bacteria was expressed in a Salmonella D-Glu auxotroph and proved to complement the phenotype. Peptidoglycan structure of the Salmonella strain expressing this racemase was also characterised.
RAW DATA OF FIGURE 1: shown in SUPPLEMENTARY MATERIAL Tables S1-S2-S3.
FIGURE 2: accession numbers of protein structures indicated in figure legend
RAW DATA FIGURE 3: Original Western images and Petri dishes photographies.
RAW DATA FIGURE 4: HPLC of in vitro assays with purified racemases. Files from CHROMELEON software. Includes data shown in Figure S4 Supplementary Material.
RAW DATA FIGURE 5: HPLC of peptidoglycan samples (2 biological replicates) from the indicated Salmonella strains. Files from CHROMELEON software.
RAW DATA FIGURES 6-7-8-9: proteomic data deposited in the MassIVE repository (https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp) under the accession MSV000093018.
RAW DATA OF SUPPLEMENTARY MATERIAL: Includes data shown in Figures S1, S2 and S3.
DOI: 10.15468/dl.eafs8m
title: Occurrence Download

description: A dataset containing 370 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinoceros sondaicus Desmarest, 1822"
 ]
}

 The dataset includes 370 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000073-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6ct5a
title: Occurrence Download

description: A dataset containing 24952 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathamus discolor (Shaw, 1790)"
 ]
}

 The dataset includes 24952 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000072-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fp54rnmsf7.1
title: IBR with at-risk and not-at-risk first and second graders

description: The current dataset includes coded transcription of small-group IBR reading sessions. Videos of the reading sessions were transcribed verbatim and the transcriptions were verified by a second reader. Subsequently the transcriptions were divided into 18,995 single units of language by the first author.
DOI: 10.15468/dl.pzagr8
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((50 55,150 55,150 90,50 90,50 55))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is ada9d123-ddb4-467d-8891-806ea8d94230",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 235 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000074-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28229436
title: Effects of robotic therapy associated with noninvasive brain stimulation on motor function in individuals with incomplete spinal cord injury: A systematic review of randomized controlled trials

description: Motor deficits are among the most common consequences of incomplete spinal cord injury (SCI). These impairments can affect patients’ levels of functioning and quality of life. Combined robotic therapy and non-invasive brain stimulation (NIBS) have been used to improve motor impairments in patients with corticospinal tract lesions. To examine the effects of combined robotic therapy and NIBS on motor function post incomplete SCI. PubMed, SCOPUS, MEDLINE, PEDro, Web of Science, REHABDATA, CINAHL, and EMBASE were searched from inception until July 2023. The Physiotherapy Evidence Database (PEDro) scale was employed to evaluate the selected studies quality. Of 557 studies, five randomized trials (<i>n</i> = 122), with 25% of participants being females, were included in this review. The PEDro scores ranged from eight to nine, with a median score of nine. There were variations in treatment protocols and outcome measures, resulting in heterogeneous findings. The findings showed revealed evidence for the impacts of combined robotic therapy and NIBS on motor function in individuals with incomplete SCI. Combined robotic training and NIBS may be safe for individuals with incomplete SCI. The existing evidence concerning its effects on motor outcomes in individuals with SCI is limited. Further experimental studies are needed to understand the effects of combined robotic training and NIBS on motor impairments in SCI populations.
DOI: 10.6084/m9.figshare.24220990.v1
title: Exploratory examination of the scale structure of the Moorong Self-Efficacy Scale: Application of Rasch Measurement Theory

description: Exploratory application of the Rasch Measurement (RM) Model for evidence for reproducibility, conceptual/content validity, and structural validity of the Moorong Self-Efficacy Scale (MSES). Secondary RM analysis of data collected in a randomized controlled trial comparing two exercise interventions for persons living with spinal cord injury (SCI). Community-dwelling persons living with SCI enrolled in an exercise study. Adults (<i>n</i> = 79) enrolled in the parent study had a traumatic SCI &gt; 3 months prior, injury level C5 to T12. Not applicable. The original MSES is a 16-item measure of self-efficacy with a 7-level response scale for un/certainty which was developed for use with persons living with SCI. We addressed item misfit, infrequent category endorsement, and category step disorder by removing two items and reorganizing the rating scale. Rating scale changes removed category 4 (Neutral), combined categories 1–3 (Very Uncertain, Somewhat Uncertain, and Uncertain) for all items, and further combined certainty categories for two items. Principal components analysis of the residuals indicated a possible second dimension with a first-contrast Eigenvalue of 2.4. However, the contrasted item groups had explained variance &lt;10% and a dis-attenuated correlation = 0.92 indicating they measure the same underlying trait. The small sample size precluded examination of differential item functioning. Exploratory RM analysis of MSES produced a 14-item Rasch version which identified structural and content validity evidence concerns inherent in the original MSES. However, results could be biased by a small sample size and further study should examine the item content and rating scale structure with larger, more diverse samples of persons living with SCI.