cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16712797
title: Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia

description: Presented here are files related the genome assembly of the kelp <em>Alaria esculenta</em> using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: <br> <em><strong>Alaria esculenta</strong></em><strong> draft genome:</strong> alaria_v3.fasta: Final assembly contigs<br> alaria_v3.gff3: Final assembly annotations <br> Alaria_esculenta_V1_repetitive_regions.out (note, contains annotations for sequences in our initial draft genome, from which we have sinced removed putative non-target sequences)<br> <strong>Population genomic analyses:</strong> A_esculenta_coverage_exon-gene_annotations_30vi22.xlsx: presents exon coverage values for each population. Note, coverage is standardized within each sample for expected coverage of single copy orthologues; 0=missing, 1=expected coverage, &gt;1=greater coverage relative to single copy orthologues (where 2=2x, 3=3x, ect).
DOI: 10.6084/m9.figshare.16712797.v4
title: Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia

description: Presented here are files related the genome assembly of the kelp <em>Alaria esculenta</em> using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: <br> <em><strong>Alaria esculenta</strong></em><strong> draft genome:</strong> alaria_v3.fasta: Final assembly contigs<br> alaria_v3.gff3: Final assembly annotations <br> Alaria_esculenta_V1_repetitive_regions.out (note, contains annotations for sequences in our initial draft genome, from which we have sinced removed putative non-target sequences)<br> <strong>Population genomic analyses:</strong> A_esculenta_coverage_exon-gene_annotations_30vi22.xlsx: presents exon coverage values for each population. Note, coverage is standardized within each sample for expected coverage of single copy orthologues; 0=missing, 1=expected coverage, &gt;1=greater coverage relative to single copy orthologues (where 2=2x, 3=3x, ect).
DOI: 10.6084/m9.figshare.16712797.v3
title: Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia

description: Presented here are files related the genome assembly of the kelp <em>Alaria esculenta</em> using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: <br> <em><strong>Alaria esculenta</strong></em><strong> draft genome:</strong> alaria_v3.fasta: Final assembly contigs<br> alaria_v3.gff3: Final assembly annotations<br> <strong>Population genomic analyses:</strong> A_esculenta_coverage_exon-gene_annotations_30vi22.xlsx: presents exon coverage values for each population. Note, coverage is standardized within each sample for expected coverage of single copy orthologues; 0=missing, 1=expected coverage, &gt;1=greater coverage relative to single copy orthologues (where 2=2x, 3=3x, ect).
DOI: 10.17632/s95m953h4g.1
title: Elemental geochemistry data from sediments in the Otway Basin, South Australia

description: Cuttings samples from petroleum wells Sawpit 1, Sawpit 2, Katnook 4, Wynn 1, Bungaloo 1 and Jolly 1ST1 were selected for whole rock elemental geochemistry using both lab-based and Portable (pXRF) Xray Fluorescence methods.  This data formed the basis of a major chemostratigraphic study used to characterise and differentiate sediments of the Early Cretaceous Crayfish Group in the Otway Basin as part a series of studies associated with the SA Department for Energy and Mining's Otway Basin 3D Basin Model and Petroleum Systems Analysis Project.
DOI: 10.6084/m9.figshare.21947657
title: Bringing the Field into the Lab: A Novel Virtual Reality Outdoor March Simulator for Evaluating Cognitive and Physical Performance - Data sets

description: There are the data sets that are associated with the manuscript entitled: "Bringing the Field into the Lab: A Novel Virtual Reality Outdoor March Simulator for Evaluating Cognitive and Physical Performance".
DOI: 10.17632/tvjm454c3y.1
title: Compound spectrum list of FII ethanol extract of Jamu pahitan

description: Chromatogram and mass spectroscopic characteristic data of Formula II (FII) ethanol extract of Jamu pahitan consisted of Andrographis paniculata, Tinospora crispa, Orthosiphon aristatus, Carica papaya, and Curcuma aeruginosa in a ratio of 1-1-1-1-1.
DOI: 10.17632/ymyhmrdg5r.1
title: AI-Generated Abstracts

description: These are AI-Generated abstracts using ChatGPT's/OpenAI's PlaygroundAI program. Please read the "READ ME FIRST" page before reading the rest.
DOI: 10.17632/2hwhv32gs2.1
title: Multifactorial heterogeneity of the human mutation landscape related to DNA replication dynamics

description: Supplemental data and code related to the manuscript: "Multifactorial heterogeneity of the human mutation landscape related to DNA replication dynamics."
DOI: 10.17632/2hwhv32gs2.2
title: Multifactorial heterogeneity of the human mutation landscape related to DNA replication dynamics

description: Supplemental data and code related to the manuscripts: 
- Caballero M, Boos D, and Koren A. The landscape of somatic mutations in lymphoblastoid cell lines. (2023).
- Caballero M and Koren A. Cell type specificity of the human mutation landscape with respect to DNA replication dynamics  (2023)

Files include:
- Consensus replication timing profiles for LCL, HT115, HCT116, and LS180 in hg38 coordinates.
- Mutations for LCL, CLL, HT115, HCT116, and LS180 in hg38 coordinates.
- Code used in analyses including replication timing generation and mutation calling.
DOI: 10.17632/2hwhv32gs2.3
title: Multifactorial heterogeneity of the human mutation landscape related to DNA replication dynamics

description: Code related to the manuscripts: 
- Caballero M, Boos D, and Koren A. The landscape of somatic mutations in lymphoblastoid cell lines. (2023).
- Caballero M and Koren A. Cell type specificity of the human mutation landscape with respect to DNA replication dynamics  (2023)

Files include:
- Consensus replication timing profiles for LCL, HT115, HCT116, and LS180 in hg38 coordinates.
- Mutations for LCL, CLL, HT115, HCT116, and LS180 in hg38 coordinates.
- Code used in analyses including replication timing generation and mutation calling.
DOI: 10.17632/wfgvgwrdrg.1
title: Camp Discovery - Supplemental Material_v1

description: This is a description of data collection process and statistical analysis. It also contains demographic breakdown of study participants as well as categorical breakdown of survey responses. Supplemental tables and figure for reference.
DOI: 10.17632/46cybwbnjh.1
title: Camp Discovery - Supplemental Material_v2

description: This is a description of data collection process and statistical analysis. It also contains demographic breakdown of study participants as well as categorical breakdown of survey responses. Supplemental tables and figure for reference.
DOI: 10.17632/gng5bdjbmr.1
title: List of Articles - Application of Hybrid Neural Models to Bioprocesses: A Systematic Literature Review

description: List of 162 articles that were analyzed for the paper under the title:” Application of Hybrid Neural Models to Bioprocesses: A Systematic Literature Review”. We collected the articles based on a selection algorithm (Appendix 1 of the paper) from Scopus and Web of Science databases over the last 30 years. Scopus: The algorithm initially retrieved 368 publications from the Scopus database, and after the screening, 82 relevant cases were obtained. Web of Science (WoS): The algorithm initially retrieved 201 publications from the WoS database, and after the screening, 79 relevant cases were obtained. From the well-known authors’ search, 685 publications were extracted, and at the final screening step, 53 relevant cases were added. Finally, 69 relevant cases were obtained from the backward citation. As a result, the dataset includes 162 papers collected by merging and removing the duplicates.
DOI: 10.17632/kzv3bd2bm2.1
title: Gendreau et al. (2006) data set

description: Gendreau et al.’s (2006) benchmark instances consist of 27 problem instances, with the number of customers varying between 15 and 100. The nodes’ coordinates, the weights demanded by the customers, and the vehicle weight capacities were taken from the CVRP instances of Toth and Vigo (2002). The loading space was defined as W = 25, H = 30, and L = 60. The loading space of the vehicles and widths, lengths, and heights of requested items were generated by Gendreau et al. (2006).
DOI: 10.17632/v4t54m2mjz.1
title: Núm. 25 (2022): Filosofía de la violencia. Pensar las violencias contra las mujeres

description: El dossier que se presenta en el número 25 de Textos y Contextos es deudor del trabajo que, durante los dos últimos años, viene desarrollando el Seminario de Investigación Permanente “Filosofía de la Violencia: pensar las violencias contra las mujeres”, de la Universidad Rey Juan Carlos (España). El trabajo se ha centrado en analizar las diversas formas en las que se ha legitimado la violencia ejercida contra los cuerpos de las mujeres. Esto implica, necesariamente, dar cuenta de su carácter poliédrico, su evolución y capacidad de adaptación a los diferentes sistemas políticos, sociales y económicos. La maleabilidad constitutiva de esta violencia supone un auténtico desafío intelectual. Nos invita a pensar, desde una perspectiva interdisciplinar e interseccional, las nuevas formas de violencia, a saber, las que se ejercen en entornos digitales, la cultural y las inherentes a las nuevas lógicas del extractivismo y la mercantilización que conviven y retroalimentan, a su vez, a las formas clásicas. Este es el debate que propicia la edición 25 de Textos y Contextos, que se publica en modalidad continua entre los meses de julio y diciembre de 2022.

Editora del Dossier: Dra. María Ávila Bravo-Villasante, Universidad Rey Juan Carlos, España.

Imagen de portada:

Autoría: “Latente Colectiva”:
Sharon Santiago, Paulina López Pérez, Nayeli Esmeralda Estrada y Rocío Olivares Pilón (México).
Título: "Cansancio"
Técnica mixta, grabado y edición digital, 40 X 30 CM, 2022.

Publicado: 2022-07-01
DOI: 10.17632/v4t54m2mjz.2
title: Núm. 25 (2022): Filosofía de la violencia. Pensar las violencias contra las mujeres

description: El dossier que se presenta en el número 25 de Textos y Contextos es deudor del trabajo que, durante los dos últimos años, viene desarrollando el Seminario de Investigación Permanente “Filosofía de la Violencia: pensar las violencias contra las mujeres”, de la Universidad Rey Juan Carlos (España). El trabajo se ha centrado en analizar las diversas formas en las que se ha legitimado la violencia ejercida contra los cuerpos de las mujeres. Esto implica, necesariamente, dar cuenta de su carácter poliédrico, su evolución y capacidad de adaptación a los diferentes sistemas políticos, sociales y económicos. La maleabilidad constitutiva de esta violencia supone un auténtico desafío intelectual. Nos invita a pensar, desde una perspectiva interdisciplinar e interseccional, las nuevas formas de violencia, a saber, las que se ejercen en entornos digitales, la cultural y las inherentes a las nuevas lógicas del extractivismo y la mercantilización que conviven y retroalimentan, a su vez, a las formas clásicas. Este es el debate que propicia la edición 25 de Textos y Contextos, que se publica en modalidad continua entre los meses de julio y diciembre de 2022.

Editora del Dossier: Dra. María Ávila Bravo-Villasante, Universidad Rey Juan Carlos, España.

Imagen de portada:

Autoría: “Latente Colectiva”:
Sharon Santiago, Paulina López Pérez, Nayeli Esmeralda Estrada y Rocío Olivares Pilón (México).
Título: "Cansancio"
Técnica mixta, grabado y edición digital, 40 X 30 CM, 2022.

Publicado: 2022-07-01
DOI: 10.17632/v4t54m2mjz.3
title: Núm. 25 (2022): Filosofía de la violencia. Pensar las violencias contra las mujeres

description: El dossier que se presenta en el número 25 de Textos y Contextos es deudor del trabajo que, durante los dos últimos años, viene desarrollando el Seminario de Investigación Permanente “Filosofía de la Violencia: pensar las violencias contra las mujeres”, de la Universidad Rey Juan Carlos (España). El trabajo se ha centrado en analizar las diversas formas en las que se ha legitimado la violencia ejercida contra los cuerpos de las mujeres. Esto implica, necesariamente, dar cuenta de su carácter poliédrico, su evolución y capacidad de adaptación a los diferentes sistemas políticos, sociales y económicos. La maleabilidad constitutiva de esta violencia supone un auténtico desafío intelectual. Nos invita a pensar, desde una perspectiva interdisciplinar e interseccional, las nuevas formas de violencia, a saber, las que se ejercen en entornos digitales, la cultural y las inherentes a las nuevas lógicas del extractivismo y la mercantilización que conviven y retroalimentan, a su vez, a las formas clásicas. Este es el debate que propicia la edición 25 de Textos y Contextos, que se publica en modalidad continua entre los meses de julio y diciembre de 2022.

Editora del Dossier: Dra. María Ávila Bravo-Villasante, Universidad Rey Juan Carlos, España.

Imagen de portada:

Autoría: “Latente Colectiva”:
Sharon Santiago, Paulina López Pérez, Nayeli Esmeralda Estrada y Rocío Olivares Pilón (México).
Título: "Cansancio"
Técnica mixta, grabado y edición digital, 40 X 30 CM, 2022.

Publicado: 2022-07-01
DOI: 10.17632/5tby8k3nz3.1
title: Input data and numerical results for `Exact and heuristic approaches to solve the Rainbow Path Cover Problem`

description: Instances and tables with computational results.
DOI: 10.17632/5tby8k3nz3.2
title: Input data and numerical results for `Exact and heuristic approaches to solve the Rainbow Path Cover Problem`

description: Instances and tables with computational results.
DOI: 10.17632/wc35zm64ym.1
title: The blastocysts biopsy results with PGT-A

description: The blastocysts obtained from the patients with recurrent implantation failure underwent preimplantation genetic testing for aneuploidy.
DOI: 10.17632/kczry7nbjv.1
title: Transcriptome data 2

description: This study revealed the effect of HD-sEVs in bovine follicular fluid on GCs.
DOI: 10.35078/1fdw9u
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Januária | Município: Matias Cardoso

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7559347
title: B-other ALL classification by Targeted RNA-sequencing

description: We present a comprehensive genetic study of 144 pediatric B-other Acute Lymphoblastic Leukemia cases diagnosed and treated at Boldrini Children's Hospital (Brazil). We performed a targeted RNA-sequencing to evaluated the benefits of introducing genomic technologies into routine diagnostics. Targeted RNA-sequencing further classified 66.7% B-other cases. All 'classical' and novel ALL subgroups, except for iAMP21, hyper- and hypodiploid cases were identified. In addition, clinically important genetic alterations as druggable lesions and prognostic factors were found. Here, we uploaded files that contain: 1. Gene expression data from the entire cohort studied, n=184 (Log2+1 TPM normalized gene expression data). Tab-delimited file (.csv) that contains a row for gene, a column for each sample, and expression values for each gene in each sample. Annotation labels are in the first three rows and in the first column. 2. A subset of 23 BAM (Binary Alignment/Map) files for representative ALL cases, including BCR-ABL1, ETV6-RUNX1, TCF3-PBX1, KMT2A-r, High-Hyperdiploidy; DUX4-r, iAMP21, PAX5-driven, ABL-class fusion, JAK2-fusion, EPOR-fusion, CRLF2-high, ZNF384-r, MEF2D-r, NUTM1-r, B-'rest', IKZF1del, and ERGdel. 3- Genetic information of the 23 BAM files provided (tab-delimited file, .txt).
DOI: 10.5281/zenodo.7559346
title: B-other ALL classification by Targeted RNA-sequencing

description: We present a comprehensive genetic study of 144 pediatric B-other Acute Lymphoblastic Leukemia cases diagnosed and treated at Boldrini Children's Hospital (Brazil). We performed a targeted RNA-sequencing to evaluated the benefits of introducing genomic technologies into routine diagnostics. Targeted RNA-sequencing further classified 66.7% B-other cases. All 'classical' and novel ALL subgroups, except for iAMP21, hyper- and hypodiploid cases were identified. In addition, clinically important genetic alterations as druggable lesions and prognostic factors were found. Here, we uploaded files that contain: 1. Gene expression data from the entire cohort studied, n=184 (Log2+1 TPM normalized gene expression data). Tab-delimited file (.csv) that contains a row for gene, a column for each sample, and expression values for each gene in each sample. Annotation labels are in the first three rows and in the first column. 2. A subset of 23 BAM (Binary Alignment/Map) files for representative ALL cases, including BCR-ABL1, ETV6-RUNX1, TCF3-PBX1, KMT2A-r, High-Hyperdiploidy; DUX4-r, iAMP21, PAX5-driven, ABL-class fusion, JAK2-fusion, EPOR-fusion, CRLF2-high, ZNF384-r, MEF2D-r, NUTM1-r, B-'rest', IKZF1del, and ERGdel. 3- Genetic information of the 23 BAM files provided (tab-delimited file, .txt).
DOI: 10.21410/7e4/w3wuvh
title: La formation des couples (1983-1985)

description: Enquête sociologique réalisée à l'Institut d'études démographiques entre 1983 et 1985 par Michel Bozon et François Héran sur la formation du couple et le choix du conjoint, composée d’une enquête par questionnaire auprès d’hommes et de femmes en couple, marié ou cohabitant, âgées de moins de 45 ans (N=2920), et d’une enquête par entretiens (N=100). Elle fait suite à une enquête Le Choix du conjoint réalisée en 1959 (N=1650) par Alain Girard à l'Ined. Cette étude interroge des thèmes tels que les circonstances et les lieux de la rencontre, les premières impressions produites par le futur conjoint, ses qualités, ses caractéristiques sociales, sa description physique, les étapes du rapprochement, le rituel du mariage, la cohabitation, l'homogamie etc. L’enquête par entretiens s'est déroulée en deux phases : une phase préliminaire d'enquête exploratoire par entretiens semi-directifs et une seconde phase après la passation du questionnaire, menée par entretiens semi-directifs auprès de personnes sélectionnées parmi les répondants au questionnaire. Si le terrain s'est arrêté en 1985 les dernières publications tirées de l'enquêtes datent de 2006 avec la publication d'un Repère Classique sur la Formation des couples. Les données quantitatives sont documentées et le fichier des données est mis à disposition par l'Institut d'études démographique (Ined) : http://bdq.reseau-quetelet.cnrs.fr/fr/Details_d_une_enquete/565
DOI: 10.3886/e123521v1-132004
title: Data and Code for "Stock Market Wealth and the Real Economy: A Local Labor Market Approach"

description: This data archive contains the data and programs necessary to replicate the empirical and numerical analyses in the paper "Stock Market Wealth and the Real Economy: A Local Labor Market Approach."<br><br>The paper provides evidence of the stock market wealth effect on consumption by using a local labor market analysis and regional heterogeneity in stock market wealth. An increase in local stock wealth driven by aggregate stock prices increases local employment and payroll in nontradable industries and in total, while having no effect on employment in tradable industries. In a model with consumption wealth effects and geographic heterogeneity, these responses imply a marginal propensity to consume out of a dollar of stock wealth of 3.2 cents per year. We also use the model to quantify the aggregate effects of a stock market wealth shock when monetary policy is passive. A 20% increase in stock valuations, unless countered by monetary policy, increases the aggregate labor bill by at least 1.7% and aggregate hours by at least 0.7% two years after the shock.
DOI: 10.6084/m9.figshare.21842538
title: Hepatic proteomic assessment of oral ingestion of titanium dioxide nano fiber (TDNF) in Sprague Dawley rats

description: Titanium dioxide nanofibers (TDNF) have been widely employed in pigments, sunscreens, paints, ointments, toothpaste and photocatalytic splitting of water. However, their potential toxicity has not been thoroughly examined. The goal of the present study is to examine hepatic effects associated with the ingestion of TDNF. TDNF was fabricated via electrospinning method and characterized. Six to seven weeks old male Sprague Dawley rats ingested (oral gavage) a total of 0 ppm, 40, 60 ppm TDNF for two weeks. After sacrifice, the liver was assessed for cellular effects using proteomic approach. The fibers diameter ranged from 0.18 − 0.29 μm, forming clusters and majority of the fibers were in the rutile phase. Proteomics assessment revealed more that more than 400 hundred proteins in the liver may be affected. These proteins are involved in such processes as catalysis of fatty acids by CoA, homocysteine metabolism, beta oxidation and the condensation of carbamoyl phosphate in the urea cycle among others. Further analysis of the protein associations showed that 325 biological processes, 140 molecular functions and 70 cellular components appear to be affected from the ingestion of TNDF. Quantitative analysis of specific mRNA transcripts indicated CMBL, GSTM1 and SDS were differentially expressed.
DOI: 10.6084/m9.figshare.21842538.v1
title: Hepatic proteomic assessment of oral ingestion of titanium dioxide nano fiber (TDNF) in Sprague Dawley rats

description: Titanium dioxide nanofibers (TDNF) have been widely employed in pigments, sunscreens, paints, ointments, toothpaste and photocatalytic splitting of water. However, their potential toxicity has not been thoroughly examined. The goal of the present study is to examine hepatic effects associated with the ingestion of TDNF. TDNF was fabricated via electrospinning method and characterized. Six to seven weeks old male Sprague Dawley rats ingested (oral gavage) a total of 0 ppm, 40, 60 ppm TDNF for two weeks. After sacrifice, the liver was assessed for cellular effects using proteomic approach. The fibers diameter ranged from 0.18 − 0.29 μm, forming clusters and majority of the fibers were in the rutile phase. Proteomics assessment revealed more that more than 400 hundred proteins in the liver may be affected. These proteins are involved in such processes as catalysis of fatty acids by CoA, homocysteine metabolism, beta oxidation and the condensation of carbamoyl phosphate in the urea cycle among others. Further analysis of the protein associations showed that 325 biological processes, 140 molecular functions and 70 cellular components appear to be affected from the ingestion of TNDF. Quantitative analysis of specific mRNA transcripts indicated CMBL, GSTM1 and SDS were differentially expressed.
DOI: 10.57966/qgqq-js26
title: ESCAP-World Bank: International Trade Costs
DOI: 10.5281/zenodo.7565787
title: notoglanidium_maculatum_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.7565786
title: notoglanidium_maculatum_decontaminated_gx.fasta.gz

description: .
DOI: 10.57966/gtma-3p93
title: Quarterly External Debt Statistics SDDS