cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/rtaxn-1wb82
title: B. subtilis minicell lysate

description: B subtilis strain DK 720 minicell lysate
description: <strong>Tilt Series Date:</strong> 2013-09-05</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dan Kearns</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Minicell isolation and Lysozyme lysis</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-21/rawdata/</p>Bacilluslysemini0023.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-21/rawdata/Bacilluslysemini0023.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bacilluslysemini0023_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-21/3dimage_30441/Bacilluslysemini0023_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/tyk4f98jxp
title: Ultra-Rare Diseases HTA Decision Analysis Project (Brazil, SUS): Comprehensive Data & Documentation Repository

description: Dataset compiling all outputs and documentation from the Ultra-Rare Diseases HTA Decision Analysis Project (Brazil, SUS).
DOI: 10.17632/tyk4f98jxp.1
title: Ultra-Rare Diseases HTA Decision Analysis Project (Brazil, SUS): Comprehensive Data & Documentation Repository

description: Dataset compiling all outputs and documentation from the Ultra-Rare Diseases HTA Decision Analysis Project (Brazil, SUS).
DOI: 10.22002/zcc0k-cjq06
title: E. coli Minicells M259Q

description: E.coli Minicells, receptor tsr M259Q on plasmid
description: <strong>Tilt Series Date:</strong> 2013-12-18</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Minicell prep, lysed</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-18-49/rawdata/</p>colimini0029.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-18-49/rawdata/colimini0029.mrc"
        > <i class="download icon"></i> Download </a></p>

        colimini0029_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-18-49/3dimage_36337/colimini0029_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v8qpw-kn043
title: E. coli (FB76)

description: Contains MreB-mCherry sandwich fusion as sole source of MreB from WT promoter.
description: <strong>Tilt Series Date:</strong> 2012-05-07</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: None μm,  magnification: 23000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Gift from Piet de Boer</p>
<strong>Purification / Growth Conditions / Treatment:</strong> LB, 30 Degrees Celsius, OD600 ~ 0.6</p>
  mst2012-05-07-13_slicer9637.jpg: Escherichia coli .  peptidoglycan
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-13/rawdata/</p>20120507_FB76_M10.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-13/rawdata/20120507_FB76_M10.mrc"
        > <i class="download icon"></i> Download </a></p>

        20120507_FB76_M10_part130_29.rec,  Reconstruction (Pixel Size 1.9 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-05-07-13/3dimage_18438/20120507_FB76_M10_part130_29.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/bpny26g569
title: Dataset - Comparative Effectiveness of Surgical and Combined Interventions for Mandibular Angle Fractures: A Frequentist Network Meta-Analysis

description: This dataset was curated to support CINeMA assessments and complementary network meta-analysis for two subnetworks (“M” and “S”). Data were provided in two CSV files (cinema_M.csv, cinema_S.csv) at the study–arm level, including study and arm identifiers, treatment codes, numbers of responders and total participants, a risk-of-bias code (1 = low, 2 = some concerns, 3 = high), and an indicator of indirectness when available.

For the M subnetwork, evidence was assembled from 7 studies and 44 arms across 5 treatments, comprising 647 participants and 639 responders. Arm-level risk of bias was distributed as 13.6% low, 72.7% some concerns, and 13.6% high. The most frequently observed direct comparison was M1S versus M3D, followed by M1S versus M2 and M1L versus M1S. For the S subnetwork, 13 studies and 63 arms across 7 treatments were included, totaling 2,107 participants and 1,986 responders. The risk-of-bias profile indicated 71.4% low and 28.6% some concerns, with no high-risk arms. The most common direct comparison involved S1S versus S2, with additional emphasis on S1L versus S1S and S1L versus S3D.

Beyond risk-of-bias profiling, the network geometry was characterized to describe the distribution of evidence across treatments and comparisons, revealing centrally connected interventions with comparatively larger information contributions and peripheral nodes with sparser evidence. Random-effects network meta-analysis models were fitted to estimate pooled relative effects, and between-study heterogeneity was quantified to reflect variability beyond sampling error. Consistency was examined using global and local approaches (including design-by-treatment evaluations and node-splitting where appropriate) to assess agreement between direct and indirect evidence. Small-study effects were explored with comparison-adjusted and network funnel plots. Treatment ranking probabilities were estimated and summarized using SUCRA to communicate the relative standing of interventions under model assumptions. Sensitivity analyses were conducted to assess robustness, including the exclusion of high risk-of-bias studies, alternative assumptions for heterogeneity, and restriction to adequately informed contrasts.

Overall, the evidence base in both subnetworks was predominantly characterized by low to moderate risk of bias, with the principal methodological concern concentrated in the M subnetwork for the M1S versus M3D contrast due to the presence of high and moderate risk contributions. The S subnetwork displayed a more favorable profile without high-risk arms. The dataset enabled reproducible derivation of network structures, risk-of-bias summaries by treatment and comparison, model-based effect estimates, consistency diagnostics, ranking summaries, and robustness checks, supported by accompanying figures that documented network structure and risk-of-bias distributions.
DOI: 10.22002/0xqm2-f4n56
title: NR1769pR388conjNR1769

description: skinny Ecoli with pR388 F plasmid conjugation with NR1769 for 30 min in a drop, Au grids
description: <strong>Tilt Series Date:</strong> 2014-10-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> NR1769 pR388</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Christian Baron</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-5/rawdata/</p>NR1769pR388_NR17690005.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-5/rawdata/NR1769pR388_NR17690005.mrc"
        > <i class="download icon"></i> Download </a></p>

        NR1769pR388_NR17690005_full.rec,  Reconstruction (Pixel Size 0.0 nm), 980.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-5/3dimage_49698/NR1769pR388_NR17690005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/bpny26g569.1
title: Dataset - Comparative Effectiveness of Surgical and Combined Interventions for Mandibular Angle Fractures: A Frequentist Network Meta-Analysis

description: This dataset was curated to support CINeMA assessments and complementary network meta-analysis for two subnetworks (“M” and “S”). Data were provided in two CSV files (cinema_M.csv, cinema_S.csv) at the study–arm level, including study and arm identifiers, treatment codes, numbers of responders and total participants, a risk-of-bias code (1 = low, 2 = some concerns, 3 = high), and an indicator of indirectness when available.

For the M subnetwork, evidence was assembled from 7 studies and 44 arms across 5 treatments, comprising 647 participants and 639 responders. Arm-level risk of bias was distributed as 13.6% low, 72.7% some concerns, and 13.6% high. The most frequently observed direct comparison was M1S versus M3D, followed by M1S versus M2 and M1L versus M1S. For the S subnetwork, 13 studies and 63 arms across 7 treatments were included, totaling 2,107 participants and 1,986 responders. The risk-of-bias profile indicated 71.4% low and 28.6% some concerns, with no high-risk arms. The most common direct comparison involved S1S versus S2, with additional emphasis on S1L versus S1S and S1L versus S3D.

Beyond risk-of-bias profiling, the network geometry was characterized to describe the distribution of evidence across treatments and comparisons, revealing centrally connected interventions with comparatively larger information contributions and peripheral nodes with sparser evidence. Random-effects network meta-analysis models were fitted to estimate pooled relative effects, and between-study heterogeneity was quantified to reflect variability beyond sampling error. Consistency was examined using global and local approaches (including design-by-treatment evaluations and node-splitting where appropriate) to assess agreement between direct and indirect evidence. Small-study effects were explored with comparison-adjusted and network funnel plots. Treatment ranking probabilities were estimated and summarized using SUCRA to communicate the relative standing of interventions under model assumptions. Sensitivity analyses were conducted to assess robustness, including the exclusion of high risk-of-bias studies, alternative assumptions for heterogeneity, and restriction to adequately informed contrasts.

Overall, the evidence base in both subnetworks was predominantly characterized by low to moderate risk of bias, with the principal methodological concern concentrated in the M subnetwork for the M1S versus M3D contrast due to the presence of high and moderate risk contributions. The S subnetwork displayed a more favorable profile without high-risk arms. The dataset enabled reproducible derivation of network structures, risk-of-bias summaries by treatment and comparison, model-based effect estimates, consistency diagnostics, ranking summaries, and robustness checks, supported by accompanying figures that documented network structure and risk-of-bias distributions.
DOI: 10.15468/dl.9j9x7v
title: Occurrence Download

description: A dataset containing 35302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Himalayan Uplands Plant database (HUP Version 1)",
 "GadmGid is Z06"
 ]
}

 The dataset includes 35302 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011382-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmk94z
title: Occurrence Download

description: A dataset containing 2084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mergus merganser Linnaeus, 1758",
 "Year 2020-2025"
 ]
}

 The dataset includes 2084 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011385-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avrzej
title: Occurrence Download

description: A dataset containing 23471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vitellaria paradoxa C.F.Gaertn.",
 "Year 1000-2023"
 ]
}

 The dataset includes 23471 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006303-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h27tu3
title: Occurrence Download

description: A dataset containing 26919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Parkia biglobosa (Jacq.) R.Br. ex G.Don, Vitellaria paradoxa C.F.Gaertn.)",
 "Year 1000-2023"
 ]
}

 The dataset includes 26919 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006306-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17882/97260
title: Dataset from a mesocosm experiment testing the effects of a terrestrial runoff on a Mediterranean plankton community

description: Climate change is expected to induce more frequent and intense extreme rainfall events in the Mediterranean region, causing increased runoff of land-derived matter into coastal waters. To understand how this affects plankton communities, an in situ mesocosm experiment was conducted in the Mediterranean Thau lagoon (43°24’53’’N, 3°41’16’’E), south of France, in spring 2021. Soil from a nearby oak forest, the Puéchabon state forest (43°44’29’’N, 3°35’45’’E), mixed with water from the main river tributary, La Vène (43°30'56.4"N 3°41'33.5"E), was used to simulate terrestrial runoff in replicate mesocosms. High-frequency monitoring of dissolved oxygen concentration, chlorophyll-a fluorescence, salinity, photosynthetically available radiation (PAR), and temperature was performed during the entire experiment in every mesocosm enclosure at a depth of 1m. Additionally, manual sampling for the analysis of organic and inorganic nutrients (nitrate, nitrite, ammonium, silicate, orthophosphate, particulate organic carbon, particulate organic nitrogen, dissolved organic carbon, dissolved inorganic carbon), pH, carbonate chemistry, and maximum quantum yield (Fv : Fm) of Photosystem II (PSII) was performed multiple time during the experiment. High-frequency data were used to estimate gross oxygen primary production (GPP), respiration (R), and phytoplankton growth (µ) and loss (L) rates, fllowing two recently published methods (Soulié et al. 2021; 2022).
DOI: 10.15468/dl.dz75hg
title: Occurrence Download

description: A dataset containing 10192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen)",
 "Continent is South America",
 "Country is Uruguay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 10192 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011384-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/loxf1e
title: Replication Data for: Distributive Implications for Governing Party Constituencies: Evidence from Bangladesh

description: The Stata do-files and data files in this replication package reproduce the tables and figures in the paper "Distributive Implications for Governing Party Constituencies: Evidence from Bangladesh".
DOI: 10.7910/dvn/eefh5d
title: Replication Data for: The Spillover Effect of Media Ownership on Mainstream Media Discourse

description: The code in this document accompanies the publication titled "The Spillover Effect of Media Ownership on Mainstream Media Discourse", published in Financial Management. This article investigates the spillover effect of a firm's media ownership on reporting by unaffiliated mainstream media outlets, using a sample of Chinese publicly listed firms. We find that firms with ownership stakes in media companies receive more coverage and more positive tones from unaffiliated mainstream media outlets than other firms do. We also find evidence suggesting mechanisms for this effect: media ownership facilitates firms in building connections with unaffiliated media outlets. In addition, we find that this spillover effect of media ownership on unaffiliated media outlets is more prominent when market-investor sentiment is more pessimistic, when firms are in “sin” industries, and when firms encounter corporate scandals. Furthermore, we document that media ownership enhances the dissemination of information disclosure and increases firm value.
DOI: 10.15468/dl.duztqd
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((24.32718 42.77677,71.04214 42.77677,71.04214 61.44154,24.32718 61.44154,24.32718 42.77677))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chenopodium foliosum Moench ex Asch."
 ]
}

 The dataset includes 85 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006398-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghnrar
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Viet Nam, Cambodia, Indonesia, Nepal, Philippines, Malaysia, Chinese Taipei, Bangladesh, Lao People’s Democratic Republic, Thailand, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer negundo L."
 ]
}

 The dataset includes 272 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009142-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15128348
title: Manuscript illustration data sheet
DOI: 10.5281/zenodo.15469582
title: Manuscript illustration data sheet
DOI: 10.15468/dl.cpy256
title: Occurrence Download

description: A dataset containing 8434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acanthaster Gervais, 1841"
 ]
}

 The dataset includes 8434 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000776-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15115191
title: Can spacecraft-borne contamination compromise our understanding of lunar ice chemistry?

description: Full animations of the distribution of exhaust CH4 molecules across the lunar surface (projections on the xy, xz and yz-planes), simulated Argonaut landing trajectory file and data required to reproduce Figures 4-7 from the paper "Francisca S. Paiva, Silvio Sinibaldi. Can spacecraft-borne contamination compromise our understanding of lunar ice chemistry? ESS Open Archive. April 28, 2025."
DOI: 10.15468/dl.3bg949
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is cave_dwelling_spiders_europe"
 ]
}

 The dataset includes 2091 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003184-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7lt-cel-0jc
title: Trapezia ferruginea Latreille 1828

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/7ww-tww-zq6
title: Carpilius convexus (Forskål 1775)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/yma-skc-33x
title: Plagusia squamosa (Herbst 1790)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/2lm-aqv-7xa
title: Ocypode ceratophthalma (Pallas 1772)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/map-d48-etz
title: Epixanthus frontalis (H. Milne-Edwards 1834)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.15468/dl.qs97tu
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmanthus virgatus",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017278-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.