cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rkwc4q
title: Occurrence Download

description: A dataset containing 1333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.20427 19.71708,-97.21208 19.66549,-97.08624 19.59983,-96.93382 19.62797,-96.8236 19.69206,-96.80797 19.78508,-96.91584 19.81634,-97.07217 19.84448,-97.17847 19.81947,-97.17456 19.76085,-97.20427 19.71708))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 1333 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002314-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trdfpv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ichthyothere pruinosa G.M.Barroso",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041090-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6tb3c
title: Occurrence Download

description: A dataset containing 72370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus domestica L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72370 records from 687 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002347-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fyuj24
title: Occurrence Download

description: A dataset containing 3350 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Reef Check in Taiwan 台灣珊瑚礁體檢"
 ]
}

 The dataset includes 3350 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256794-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hlaloo
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ichthyothere rufa Gardner",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041091-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g98v5u
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphecodes johnsonii Lovell, 1909"
 ]
}

 The dataset includes 122 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002357-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnyap7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Isthmura boneti (Alvarez & Martín, 1967)"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256803-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prn6us
title: Occurrence Download

description: A dataset containing 507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Bougainvillea Comm. ex Juss."
 ]
}

 The dataset includes 507 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041091-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2k2uas
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hieracium cerinthoides L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 832 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002485-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yxlfr
title: Occurrence Download

description: A dataset containing 577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "TaxonKey is Cornus hongkongensis Hemsl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 577 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002229-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oxt95a
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ichthyothere suffruticosa Gardner",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041094-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvbbru
title: Occurrence Download

description: A dataset containing 98167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Harmonia axyridis (Pallas, 1773)"
 ]
}

 The dataset includes 98167 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002484-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czs7kh
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora ovata Martin ex DC."
 ]
}

 The dataset includes 26 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256797-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx6gpk
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Species composition in twelve (12) Afzelia africana Sm & Pers populations in Benin."
 ]
}

 The dataset includes 426 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041094-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hqqmr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum dupliciscutula Senghas"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148180-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.949q5h
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis spilogaster (Lynch, 1984)"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011190-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5c7k4
title: Occurrence Download

description: A dataset containing 67603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is one of (EOD – eBird Observation Dataset, LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands) [subsampled representation], Flora-On: occurrence data of the flora of mainland Portugal, Ringing or Bird Recapture, Forestry Inventory 2005, Forestry Inventory 2010, Forestry Inventory 2015, Anillamiento SEO_Bird ringing, Observation.org, Nature data from around the World, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-9.73421 36.77998,-6.10506 36.77998,-6.10506 42.31856,-9.73421 42.31856,-9.73421 36.77998))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Certhiidae",
 "Year 2003-2024"
 ]
}

 The dataset includes 67603 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002312-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29yxoi
title: Occurrence Download

description: A dataset containing 35425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Echinodermata"
 ]
}

 The dataset includes 35425 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041097-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcfk3e
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.32861 23.95679,113.20752 23.02515,114.15674 22.7439,116.47705 23.35913,117.8877 24.4292,119.13135 25.80249,120.1333 27.2439,120.44971 29.68726,119.46533 32.23608,117.18018 32.85132,115.36963 32.85132,113.96338 32.71069,112.06494 32.11304,111.01025 28.89624,111.23877 26.61108,111.2915 25.64429,112.32861 23.95679))",
 "TaxonKey is Picea neoveitchii Mast."
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043205-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7c6bq
title: Occurrence Download

description: A dataset containing 2317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Geoplanidae",
 "Year 2001-2024"
 ]
}

 The dataset includes 2317 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002319-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xflkl4
title: Occurrence Download

description: A dataset containing 407594 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Malacology Collection at the Academy of Natural Sciences of Philadelphia"
 ]
}

 The dataset includes 407594 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042830-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsctjg
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Selaginella opaca Warb.",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087802-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj6ybz
title: Occurrence Download

description: A dataset containing 1440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "TaxonKey is Santalum album L."
 ]
}

 The dataset includes 1440 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003281-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgce8f
title: Occurrence Download

description: A dataset containing 96229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cameroon",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 96229 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262680-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvyqzj
title: Occurrence Download

description: A dataset containing 75650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 {
 "or" : [
 "EstablishmentMeans is INTRODUCED",
 "EstablishmentMeans is INVASIVE",
 "EstablishmentMeans is MANAGED"
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 75650 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087806-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwytng
title: Occurrence Download

description: A dataset containing 702367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0, Pending, Incompatible)",
 "TaxonKey is Alnus glutinosa (L.) Gaertn."
 ]
}

 The dataset includes 702367 records from 1777 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003285-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/w7mt1d/0d4nz0
title: DATA_Relevanz_UtilityValue.tab

description: :unav
DOI: 10.25625/w7mt1d/oyncrt
title: DATA_Instruktionsdesign.tab

description: :unav
DOI: 10.25625/w7mt1d/ye8o3h
title: DATA_InteresseOPM(Zusatz).tab

description: :unav
DOI: 10.25625/w7mt1d/2gzpdf
title: Bögeholz_Matthiesen(2025)-ReadME_StatistischeAnalyse.txt

description: :unav
DOI: 10.25625/w7mt1d/weog4f
title: DATA_Interesse.tab

description: :unav
DOI: 10.25625/w7mt1d/r3legy
title: DATA_Wissen.tab

description: :unav
DOI: 10.5281/zenodo.17916932
title: Supplementary Materials: BertsWin: Resolving Topological Sparsity in 3D Masked Autoencoders via Component-Balanced Structural Optimization

description: This repository contains the official implementation and artifacts for the BertsWin paper:Code: PyTorch implementation of BertsWin and PhysLossModels: Pre-trained checkpoints for BertsWin (PhysLoss, MVC, L2) and Baseline Monai MAE ViTLogs: Full TensorBoard training logs validating the 15x convergence speedupData: 3D volumetric reconstructions (NRRD) of TMJ samples used in the qualitative analysis

The application of self-supervised learning (SSL) and Vision Transformers (ViTs) approaches demonstrates promising results in the field of 2D medical imaging, but the use of these methods on 3D volumetric images is fraught with difficulties. Standard Masked Autoencoders (MAE), which are a SOTA solution for 2D, have a hard time capturing three-dimensional spatial relationships, especially when 75% of tokens are discarded during pre-production.

We propose BertsWin, a hybrid architecture combining full BERT-style token masking using Swin Transformer windows, to enhance spatial context learning in 3D during SSL pre-training.

Unlike the classic MAE, which processes only visible areas, BertsWin introduces a complete 3D grid of tokens (masked and visible), preserving the spatial topology. And to smooth out the quadratic complexity of ViT, single-level local SWIN windows are used. We introduce a structural priority loss function (MVC) and evaluate the results of cone beam computed tomography (CBCT) of the temporomandibular joints (TMJ). The subsequent assessment includes TMJ segmentation on 3D CT scans.

We demonstrate that the BertsWin architecture, by maintaining a complete three-dimensional spatial topology, inherently accelerates semantic convergence by a factor of 5.8x compared to standard ViT-MAE baselines. Furthermore, when coupled with our proposed GradientConductor optimizer, the full BertsWin framework achieves a 15-fold reduction in training epochs (44 vs. 660) required to reach state-of-the-art reconstruction fidelity. Analysis reveals that BertsWin achieves this acceleration without the computational penalty typically associated with dense volumetric processing. At standard input resolutions, the architecture maintains theoretical FLOP parity with sparse ViT baselines, resulting in a significant net reduction in total computational resources due to faster convergence.
DOI: 10.5281/zenodo.17916931
title: Supplementary Materials: BertsWin: Resolving Topological Sparsity in 3D Masked Autoencoders via Component-Balanced Structural Optimization

description: This repository contains the official implementation and artifacts for the BertsWin paper:Code: PyTorch implementation of BertsWin and PhysLossModels: Pre-trained checkpoints for BertsWin (PhysLoss, MVC, L2) and Baseline Monai MAE ViTLogs: Full TensorBoard training logs validating the 15x convergence speedupData: 3D volumetric reconstructions (NRRD) of TMJ samples used in the qualitative analysis

The application of self-supervised learning (SSL) and Vision Transformers (ViTs) approaches demonstrates promising results in the field of 2D medical imaging, but the use of these methods on 3D volumetric images is fraught with difficulties. Standard Masked Autoencoders (MAE), which are a SOTA solution for 2D, have a hard time capturing three-dimensional spatial relationships, especially when 75% of tokens are discarded during pre-production.

We propose BertsWin, a hybrid architecture combining full BERT-style token masking using Swin Transformer windows, to enhance spatial context learning in 3D during SSL pre-training.

Unlike the classic MAE, which processes only visible areas, BertsWin introduces a complete 3D grid of tokens (masked and visible), preserving the spatial topology. And to smooth out the quadratic complexity of ViT, single-level local SWIN windows are used. We introduce a structural priority loss function (MVC) and evaluate the results of cone beam computed tomography (CBCT) of the temporomandibular joints (TMJ). The subsequent assessment includes TMJ segmentation on 3D CT scans.

We demonstrate that the BertsWin architecture, by maintaining a complete three-dimensional spatial topology, inherently accelerates semantic convergence by a factor of 5.8x compared to standard ViT-MAE baselines. Furthermore, when coupled with our proposed GradientConductor optimizer, the full BertsWin framework achieves a 15-fold reduction in training epochs (44 vs. 660) required to reach state-of-the-art reconstruction fidelity. Analysis reveals that BertsWin achieves this acceleration without the computational penalty typically associated with dense volumetric processing. At standard input resolutions, the architecture maintains theoretical FLOP parity with sparse ViT baselines, resulting in a significant net reduction in total computational resources due to faster convergence.
DOI: 10.15468/dl.8mrzyw
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -5.914722",
 "DecimalLatitude is less than or equal to -0.914722",
 "DecimalLongitude is greater than or equal to 155.0",
 "DecimalLongitude is less than or equal to 160.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 207 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051085-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn63sq
title: Occurrence Download

description: A dataset containing 2927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.61551 29.72072,120.78967 29.72072,120.78967 30.89069,119.61551 30.89069,119.61551 29.72072))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Charadriidae"
 ]
}

 The dataset includes 2927 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051086-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk68mn
title: Occurrence Download

description: A dataset containing 4129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 4.085278",
 "DecimalLatitude is less than or equal to 9.085278",
 "DecimalLongitude is greater than or equal to 155.0",
 "DecimalLongitude is less than or equal to 160.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 4129 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051087-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6atq7
title: Occurrence Download

description: A dataset containing 363953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nyctalus leisleri, Nyctalus plancyi, Nyctereutes procyonoides, Nycteris tragata, Nycticebus bengalensis, Nycticebus coucang, Nyctinomus aegyptiacus, Ochotona cansus, Ochotona curzoniae, Ochotona dauurica, Ochotona forresti, Ochotona gloveri, Ochotona macrotis, Ochotona nubrica, Ochotona roylii, Ochotona syrinx, Ochotona thibetana, Otocolobus manul, Otomops wroughtoni, Ovis ammon, Paguma larvata, Panthera pardus, Panthera tigris, Panthera uncia, Paradoxurus hermaphroditus, Paradoxurus jerdoni, Paraechinus nudiventris, Parascaptor leucura, Pardofelis marmorata, Penthetor lucasii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 363953 records from 3312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051079-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.