cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29497352
title: APEX2 ATOX1 LFQ proteomics MB MC MT 2025_NF_KEV.xlsxLFQ Proteomics data APEX2-ATOX1 MB MC MT 2025

description: Comparative proteomics of proteins from proximity labeling experiment in murine skeletal myoblasts, myocytes, and myotubes using APEX2-tagged ATOX1 as bait.
DOI: 10.6084/m9.figshare.29497352.v1
title: APEX2 ATOX1 LFQ proteomics MB MC MT 2025_NF_KEV.xlsxLFQ Proteomics data APEX2-ATOX1 MB MC MT 2025

description: Comparative proteomics of proteins from proximity labeling experiment in murine skeletal myoblasts, myocytes, and myotubes using APEX2-tagged ATOX1 as bait.
DOI: 10.5281/zenodo.17553877
title: Experimental data for paper "Spectroscopy and Coherence of an Excited-State Transition in Tm3+:YAlO3 at Telecommunication Wavelength"

description: These are the experimental data for figures in paper "Spectroscopy and Coherence of an Excited-State Transition in Tm3+:YAlO3 at Telecommunication Wavelength".

The related experiments for these data are described in the paper and its related supplementary materials.
DOI: 10.5281/zenodo.17553876
title: Experimental data for paper "Spectroscopy and Coherence of an Excited-State Transition in Tm3+:YAlO3 at Telecommunication Wavelength"

description: These are the experimental data for figures in paper "Spectroscopy and Coherence of an Excited-State Transition in Tm3+:YAlO3 at Telecommunication Wavelength".

The related experiments for these data are described in the paper and its related supplementary materials.
DOI: 10.25345/c50k26q9c
title: MassIVE MSV000099790 - plantMASST data submission - additional plant families
title: Plant metabolic extracts. Plant seeds and plant tissues as specified in file name and metadata were collected. 0.1-0.2 g fresh weight tissue were frozen, ground in a metal Tissuelyzer homogenizer tube with one 0.25 in stainless steel ball (MP Biomedicals, Cat# MP116991006) for 1 min at 6 m/s with a MP Biomedicals FastPrep-24-5G Tissuelyser. Ground tissue was added with 1 mL 80% methanol, ground another 20 s at 6 m/s with the Tissuelyzer and then incubated for 10 min at 60 celsius in a waterbath. Methanol extract was separated from insoluble material by centrifugation at 16,000 x g for 5 min, and filtered through Whatman 0.2 um syringeless LC-MS filters (Cytiva, Cat# UN503NPEORG) before LC-MS analysis. Extract samples were analyzed by LC-MS/MS on an Thermo QExactive orbitrap with a HESI-II ion source and a Vanquish LC. LC-MS settings were as follows: Injection volume 5 uL, LC - Phenomenex Kinetex 2.6 um C18 reverse phase 100 A 150 x 3 mm LC column, LC gradient: solvent A - 0.1% formic acid, solvent B - acetonitrile (0.1% formic acid), 0 min: 10% B, 0.7 min: 10% B, 9.8 min: 95% B, 10.7 min: 95% B, 10.8 min: 10% B, 14.8 min: 10% B, 0.5 mL/min, MS - positive ion mode, Full MS: Resolution 35,000, AGC target 1e6, Maximum IT 50 ms, mass range 150-500 m/z (lowmz method) or 450-1,500 m/z (highmz method), dd-MS2 (data-dependent MS/MS): resolution 17,500, AGC target 1e5, Maximum IT 50 ms, Loop count 5, Isolation width 1.0 m/z, Collision energy 25 eV (stepped 20, 25, 30 eV), dynamic exclusion 0.5 s.
DOI: 10.5281/zenodo.17549403
title: Underwater images collected by a Kite surf in Anse-La-Raie, Mauritius - 2018-08-18

description: This dataset was collected by a Kite surf in Anse-La-Raie, Mauritius - 2018-08-18. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!
DOI: 10.57745/avtj2d
title: Description of NMR 1D 2D spectra dataset for kiwifruit metabolite annotation before quantification NMR.pdf

description: Details of NMR spectra dataset used for kiwifruit metabolite annotation before quantification by NMR
DOI: 10.57745/bblcb8
title: ACBBI_17P14_Kiwifruit 2DNMR.zip

description: 500MHz NMR files of 1D 1H and 13C, and 2D (COSY, HSQC, HMBC) spectra of 4 kiwifruit polar extracts at developmental stage 1, 3, 5 and 10. TopSpin Bruker File format
DOI: 10.57745/arasf9
title: Kiwifruit-1D-NMR-resonance-groups.pptx

description: Annotation of the regions selected for integration (grey vertical bars) for metabolite quantification on representative 1D 1H NMR spectra after processing with NMRProcFlow.
DOI: 10.57745/pe5q82
title: ACBBI_17P14_Kiwi_1Dsamples.zip

description: 500MHz NMR files of 1H-NMR spectra of kiwifruit polar extracts (12 developmental stages). TopSpin Bruker File format
DOI: 10.57745/umskcs
title: 3_Kiwifruit_NMR_Metabolites_Metadata_for_Quantification.pdf

description: NMR_Metabolites_Metadata: 1H-NMR spectra region used for quantification, resonance pattern and proportion of signal taken into account for quantification with NMRProcFlow
DOI: 10.57745/pd1m03
title: 1_Kiwifruit-Sample-Metadata.pdf

description: Metadata of kiwifruit samples
DOI: 10.57745/bkcsec
title: Kiwifruit-NMR-DATA.tab

description: Metabolite quantification data in mg/gDW
DOI: 10.57745/tcf5e4
title: 0_Kiwifruit-NMR-Methods.pdf

description: Proton NMR profiling method: from extraction to NMR acquisition, processing and metabolite quantification
DOI: 10.57745/29hiqx
title: Frimouss NMR kiwifruit

description: Metabolomic analyses of kiwifruit (Actinidia chinensis var. deliciosa Chev.) fruits cultivated in an orchard: Quantitative 1H-NMR profiling of fruit extracts at 12 stages of development.
DOI: 10.25345/c5vt1h34d
title: MassIVE MSV000099791 - Supercharging-Enhanced nDIA-MS Enables Global Profiling of Drug-Induced Proteome Solubility Shifts (Method evaluation)
title: Mass spectrometry (MS)-based proteomics has become indispensable for high-throughput quantitation of protein expression. However, protein function is regulated by a variety of factors beyond abundance alone. Here, we optimized narrow-window, data-independent ac-quisition (nDIA) MS with 3% DMSO as a supercharging co-solvent, boosting signal intensity by up to 56% and enabling identification of ~9,600 proteins from 1 vg of HeLa digest with a 15 min gradient. Using this methodology, we quantified solubility and abundance changes in 8,694 pro-teins across three cell lines following short-term treatment with the proteasome inhibitor MG132 and the SUMO-activating enzyme inhibitor ML-792. MG132 affected the solubility of 1,723 pro-teins and the abundance of 374, and ML-792 impacted 1,294 and 288, respectively. The drugs elicited distinct and sometimes opposing solubility shifts; For instance, MG132 insolubilized HSF1, ML-792 solubilized SP100 and insolubilized PLOR3G, and SMAD2 showed opposite responses to those two treatments. These results reveal widespread, drug-induced remodeling of the pro-tein solubility landscape and establish solubility profiling by nDIA-MS as a robust and broadly ap-plicable platform for uncovering protein state transitions and cellular responses to perturbation.
DOI: 10.34740/kaggle/dsv/13650067
title: eBird Indian Birds Observations
DOI: 10.15468/dl.zhp2ys
title: Occurrence Download

description: A dataset containing 3030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agrilus planipennis"
 ]
}

 The dataset includes 3030 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021861-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da8e2j
title: Occurrence Download

description: A dataset containing 12951 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Roadkill"
 ]
}

 The dataset includes 12951 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021863-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17553915
title: Variables and final indices from paper "The Geography of the Green Transition: Performance, Vulnerabilities and Opportunities"

description: This dataset contains the all the variables and final indices used in the paper “The Geography of the Green Transition: Performance, Vulnerabilities and Opportunities.” Values are provided for NUTS2 regions (2021 delineations).

File: "variables.xls"

Contains the 31 variables discused in the main paper used to construct each of the dimensions of the RGTP as well as the final index. The sources with a direct link of each variable can be found in Table A1 of the Supplementary Material of the paper.

File: "performance_data.xls"Variables:  year: Calendar year (2009-2022)  nuts2: NUTS2 code 2021  environmental: related dimension of RGTP  energy: related dimension of RGTP  circular_economy: related dimension of RGTP  innovation: related dimension of RGTP  mobility: related dimension of RGTP  sust_development: related dimension of RGTP  just_transition: related dimension of RGTP  RGTP: Regional Green Transition Performance index (PCA version-normalized) 2009-2022  RGTO: Regional Green Trasnition Opportunity index (PCA version-normalized) 2009-2022------------------------------------------------------------------------------------------------------File: "typology_dataVariables:

  RGTO: Regional Green Trasnition Opportunity index (PCA version-normalized) 2009-2022  RGTV: Regional Green Transition Vulnerability index (Rodríguez-Pose and Bartalucci 2024) only at 2022  typology: Include the labels of the 2x2 categories described in the paper. Only 2022.

License: CC BY 4.0How to cite: Contact: sebastianritter@ub.edu | vroyuela@ub.edu
DOI: 10.5281/zenodo.17545359
title: Variables and final indices from paper "The Geography of the Green Transition: Performance, Vulnerabilities and Opportunities"

description: This dataset contains the all the variables and final indices used in the paper “The Geography of the Green Transition: Performance, Vulnerabilities and Opportunities.” Values are provided for NUTS2 regions (2021 delineations).

File: "variables.xls"

Contains the 31 variables discused in the main paper used to construct each of the dimensions of the RGTP as well as the final index. The sources with a direct link of each variable can be found in Table A1 of the Supplementary Material of the paper.

File: "performance_data.xls"Variables:  year: Calendar year (2009-2022)  nuts2: NUTS2 code 2021  environmental: related dimension of RGTP  energy: related dimension of RGTP  circular_economy: related dimension of RGTP  innovation: related dimension of RGTP  mobility: related dimension of RGTP  sust_development: related dimension of RGTP  just_transition: related dimension of RGTP  RGTP: Regional Green Transition Performance index (PCA version-normalized) 2009-2022  RGTO: Regional Green Trasnition Opportunity index (PCA version-normalized) 2009-2022------------------------------------------------------------------------------------------------------File: "typology_dataVariables:

  RGTO: Regional Green Trasnition Opportunity index (PCA version-normalized) 2009-2022  RGTV: Regional Green Transition Vulnerability index (Rodríguez-Pose and Bartalucci 2024) only at 2022  typology: Include the labels of the 2x2 categories described in the paper. Only 2022.

License: CC BY 4.0How to cite: Contact: sebastianritter@ub.edu | vroyuela@ub.edu
DOI: 10.25345/c5r20s90k
title: MassIVE MSV000099792 - plantMASST submission - seedling extracts
title: Plant metabolic extracts. Plant seedlings were grown in Premier Horticulture Pro Mix HP High Porosity with Mycorrhizae for plant growth under plant growth lights with a 16 h light/8 h dark cycle for 6-8 weeks at room temperature. Plant tissue samples were collected as specified in file name and metadata. 0.1-0.2 g fresh weight tissue were frozen, ground in a metal Tissuelyzer homogenizer tube with one 0.25 in stainless steel ball (MP Biomedicals, Cat# MP116991006) for 1 min at 6 m/s with a MP Biomedicals FastPrep-24-5G Tissuelyser. Ground tissue was added with 1 mL 80% methanol, ground another 20 s at 6 m/s with the Tissuelyzer and then incubated for 10 min at 60 celsius in a waterbath. Methanol extract was separated from insoluble material by centrifugation at 16,000 x g for 5 min, and filtered through Whatman 0.2 um syringeless LC-MS filters (Cytiva, Cat# UN503NPEORG) before LC-MS analysis. Extract samples were analyzed by LC-MS/MS on an Thermo QExactive orbitrap with a HESI-II ion source and a Vanquish LC. LC-MS settings were as follows: Injection volume 5 uL, LC - Phenomenex Kinetex 2.6 um C18 reverse phase 100 A 150 x 3 mm LC column, LC gradient: solvent A - 0.1% formic acid, solvent B - acetonitrile (0.1% formic acid), 0 min: 10% B, 0.7 min: 10% B, 9.8 min: 95% B, 10.7 min: 95% B, 10.8 min: 10% B, 14.8 min: 10% B, 0.5 mL/min, MS - positive ion mode, Full MS: Resolution 35,000, AGC target 1e6, Maximum IT 50 ms, mass range 150-500 m/z (lowmz method) or 450-1,500 m/z (highmz method), dd-MS2 (data-dependent MS/MS): resolution 17,500, AGC target 1e5, Maximum IT 50 ms, Loop count 5, Isolation width 1.0 m/z, Collision energy 25 eV (stepped 20, 25, 30 eV), dynamic exclusion 0.5 s.
DOI: 10.15468/dl.32mcdy
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abronia matudai"
 ]
}

 The dataset includes 45 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021865-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17553909
title: Probabilistic Targeted Factor Analysis

description: Data to replicate our paper on "Probabilistic Targeted Factor Analysis".
DOI: 10.5281/zenodo.17553910
title: Probabilistic Targeted Factor Analysis

description: Data to replicate our paper on "Probabilistic Targeted Factor Analysis".
DOI: 10.15468/dl.p2zr7b
title: Occurrence Download

description: A dataset listing the 1566 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-75.5816 1.60269,-75.58035 1.60799,-75.59345 1.60409,-75.59688 1.6069,-75.59953 1.61158,-75.59298 1.61766,-75.59111 1.61984,-75.59595 1.61984,-75.59298 1.62624,-75.58939 1.63279,-75.59501 1.63934,-75.5961 1.63357,-75.60172 1.63373,-75.60905 1.63404,-75.60999 1.63919,-75.6117 1.64278,-75.62137 1.64356,-75.62558 1.64059,-75.62465 1.63139,-75.62902 1.63076,-75.63666 1.6278,-75.63572 1.62016,-75.63073 1.61829,-75.62168 1.61829,-75.61888 1.61127,-75.60921 1.60893,-75.60577 1.60378,-75.60125 1.60159,-75.59907 1.59957,-75.5947 1.59629,-75.59049 1.59754,-75.58721 1.59879,-75.5816 1.60269))"
 ]
}

 The dataset's 1566 records were derived from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021855-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/fickett-c25-256
title: Edward H. Fickett, FAIA, Collection

description: The Edward H. Fickett Collection contains a selection of items digitized from the archives of the architectural office of Edward H. Fickett (1916-1999), FAIA, in Special Collections, USC Libraries. The physical collection contains 664.04 linear feet of architectural drawings, renderings, and photographs as well as other material stored in 360 boxes, including 99 long boxes, 163 document boxes, 2 banker's boxes, an additional 96 boxes of various sizes; and 52 flat file drawers. Another set of renderings is stored in flat folders. In addition, there are 4 3-D models of Fickett projects. The entire physical collection dates from 1945-2013.Examples in the digital selection include some of Fickett's more notable designs: Dodger Stadium, Los Angeles Police Academy, Hotel Cabo San Lucas, Los Angeles City Hall tower renovation and the Port of Los Angeles Passenger and Cargo Terminals.The rights to the archive as well as the physical materials were transferred to USC.The USC Digital Library acknowledges the support provided by the National Historical Publications and Records Commission in making this material available online.
DOI: 10.25549/fickett-c25-265
title: Edward H. Fickett, FAIA, Collection

description: The Edward H. Fickett Collection contains a selection of items digitized from the archives of the architectural office of Edward H. Fickett (1916-1999), FAIA, in Special Collections, USC Libraries. The physical collection contains 664.04 linear feet of architectural drawings, renderings, and photographs as well as other material stored in 360 boxes, including 99 long boxes, 163 document boxes, 2 banker's boxes, an additional 96 boxes of various sizes; and 52 flat file drawers. Another set of renderings is stored in flat folders. In addition, there are 4 3-D models of Fickett projects. The entire physical collection dates from 1945-2013.Examples in the digital selection include some of Fickett's more notable designs: Dodger Stadium, Los Angeles Police Academy, Hotel Cabo San Lucas, Los Angeles City Hall tower renovation and the Port of Los Angeles Passenger and Cargo Terminals.The rights to the archive as well as the physical materials were transferred to USC.The USC Digital Library acknowledges the support provided by the National Historical Publications and Records Commission in making this material available online.
DOI: 10.25549/fickett-c25-262
title: Edward H. Fickett, FAIA, Collection

description: The Edward H. Fickett Collection contains a selection of items digitized from the archives of the architectural office of Edward H. Fickett (1916-1999), FAIA, in Special Collections, USC Libraries. The physical collection contains 664.04 linear feet of architectural drawings, renderings, and photographs as well as other material stored in 360 boxes, including 99 long boxes, 163 document boxes, 2 banker's boxes, an additional 96 boxes of various sizes; and 52 flat file drawers. Another set of renderings is stored in flat folders. In addition, there are 4 3-D models of Fickett projects. The entire physical collection dates from 1945-2013.Examples in the digital selection include some of Fickett's more notable designs: Dodger Stadium, Los Angeles Police Academy, Hotel Cabo San Lucas, Los Angeles City Hall tower renovation and the Port of Los Angeles Passenger and Cargo Terminals.The rights to the archive as well as the physical materials were transferred to USC.The USC Digital Library acknowledges the support provided by the National Historical Publications and Records Commission in making this material available online.
DOI: 10.25549/fickett-c25-240
title: Edward H. Fickett, FAIA, Collection

description: The Edward H. Fickett Collection contains a selection of items digitized from the archives of the architectural office of Edward H. Fickett (1916-1999), FAIA, in Special Collections, USC Libraries. The physical collection contains 664.04 linear feet of architectural drawings, renderings, and photographs as well as other material stored in 360 boxes, including 99 long boxes, 163 document boxes, 2 banker's boxes, an additional 96 boxes of various sizes; and 52 flat file drawers. Another set of renderings is stored in flat folders. In addition, there are 4 3-D models of Fickett projects. The entire physical collection dates from 1945-2013.Examples in the digital selection include some of Fickett's more notable designs: Dodger Stadium, Los Angeles Police Academy, Hotel Cabo San Lucas, Los Angeles City Hall tower renovation and the Port of Los Angeles Passenger and Cargo Terminals.The rights to the archive as well as the physical materials were transferred to USC.The USC Digital Library acknowledges the support provided by the National Historical Publications and Records Commission in making this material available online.
DOI: 10.25549/fickett-c25-235
title: Edward H. Fickett, FAIA, Collection

description: The Edward H. Fickett Collection contains a selection of items digitized from the archives of the architectural office of Edward H. Fickett (1916-1999), FAIA, in Special Collections, USC Libraries. The physical collection contains 664.04 linear feet of architectural drawings, renderings, and photographs as well as other material stored in 360 boxes, including 99 long boxes, 163 document boxes, 2 banker's boxes, an additional 96 boxes of various sizes; and 52 flat file drawers. Another set of renderings is stored in flat folders. In addition, there are 4 3-D models of Fickett projects. The entire physical collection dates from 1945-2013.Examples in the digital selection include some of Fickett's more notable designs: Dodger Stadium, Los Angeles Police Academy, Hotel Cabo San Lucas, Los Angeles City Hall tower renovation and the Port of Los Angeles Passenger and Cargo Terminals.The rights to the archive as well as the physical materials were transferred to USC.The USC Digital Library acknowledges the support provided by the National Historical Publications and Records Commission in making this material available online.