cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6161111.v1
title: New information on the osteology and a taxonomic revision of the genus <i>Thalassodromeus</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae)

description: <i>Thalassodromeus sethi</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae) is a unique pterosaur from the Romualdo Formation, Araripe Basin (Early Cretaceous, Albian). A large sagittal cranial crest (the largest known ossified crest of any pterosaur) and unusual toothless bladed jaws constitute some of its outstanding anatomical features. Its holotype (DGM 1476-R, almost complete skull and mandible in three dimensions) represents one of the largest pterosaur skulls ever found. Here, we provide a detailed osteological redescription of the holotype, which has only been preliminarily described. We also describe and depict for the first time some skeletal regions of <i>Th. sethi</i>, including the occiput, the palatal openings, and a dentary fragment. Finally, in the light of new information concerning this species, we revisited the specimen NMSG SAO 251093 (an incomplete mandible), also from the Romualdo Formation and originally referred to <i>Th. sethi</i> but recently redescribed as a new species of dsungaripterid pterosaur named <i>Banguela oberlii</i>. Here, the analysis of a cast (MN 4703-V) and its inclusion in a phylogenetic analysis recovered NMSG SAO 251093 within the Thalassodrominae, as a sister taxon of <i>Th. sethi</i> and indeed different from it at the species level. We hereby rename it <i>Thalassodromeus oberlii</i>, comb. nov. These considerations provide new data for discussions concerning the morphology of the Tapejaridae, the diversity of the Araripe pterosaur fauna, and the complex evolution of the pterodactyloid palatal region, as well as data for future morphofunctional studies of <i>Thalassodromeus</i>. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Pêgas, R. V., F. R. Costa, and A. W. A. Kellner. 2018. New information on the osteology and a taxonomic revision of the genus <i>Thalassodromeus</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae). Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2018.1443273.
DOI: 10.6084/m9.figshare.6161111.v2
title: New Information on the osteology and a taxonomic revision of The genus <i>Thalassodromeus</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae)

description: <i>Thalassodromeus sethi</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae) is a unique pterosaur from the Romualdo Formation, Araripe Basin (Early Cretaceous, Albian). A large sagittal cranial crest (the largest known ossified crest of any pterosaur) and unusual toothless bladed jaws constitute some of its outstanding anatomical features. Its holotype (DGM 1476-R, almost complete skull and mandible in three dimensions) represents one of the largest pterosaur skulls ever found. Here, we provide a detailed osteological redescription of the holotype, which has only been preliminarily described. We also describe and depict for the first time some skeletal regions of <i>Th. sethi</i>, including the occiput, the palatal openings, and a dentary fragment. Finally, in the light of new information concerning this species, we revisited the specimen NMSG SAO 251093 (an incomplete mandible), also from the Romualdo Formation and originally referred to <i>Th. sethi</i> but recently redescribed as a new species of dsungaripterid pterosaur named <i>Banguela oberlii</i>. Here, the analysis of a cast (MN 4703-V) and its inclusion in a phylogenetic analysis recovered NMSG SAO 251093 within the Thalassodrominae, as a sister taxon of <i>Th. sethi</i> and indeed different from it at the species level. We hereby rename it <i>Thalassodromeus oberlii</i>, comb. nov. These considerations provide new data for discussions concerning the morphology of the Tapejaridae, the diversity of the Araripe pterosaur fauna, and the complex evolution of the pterodactyloid palatal region, as well as data for future morphofunctional studies of <i>Thalassodromeus</i>. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Pêgas, R. V., F. R. Costa, and A. W. A. Kellner. 2018. New information on the osteology and a taxonomic revision of the genus <i>Thalassodromeus</i> (Pterodactyloidea, Tapejaridae, Thalassodrominae). Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2018.1443273.
DOI: 10.6084/m9.figshare.6161030
title: Efficient Adaptive MCMC Through Precision Estimation

description: The performance of Markov chain Monte Carlo (MCMC) algorithms like the Metropolis Hastings Random Walk (MHRW) is highly dependent on the choice of scaling matrix for the proposal distributions. A popular choice of scaling matrix in adaptive MCMC methods is to use the empirical covariance matrix (ECM) of previous samples. However, this choice is problematic if the dimension of the target distribution is large, since the ECM then converges slowly and is computationally expensive to use. We propose two algorithms to improve convergence and decrease computational cost of adaptive MCMC methods in cases when the precision (inverse covariance) matrix of the target density can be well-approximated by a sparse matrix. The first is an algorithm for online estimation of the Cholesky factor of a sparse precision matrix. The second estimates the sparsity structure of the precision matrix. Combining the two algorithms allows us to construct precision-based adaptive MCMC algorithms that can be used as black-box methods for densities with unknown dependency structures. We construct precision-based versions of the adaptive MHRW and the adaptive Metropolis adjusted Langevin algorithm and demonstrate the performance of the methods in two examples. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.6161030.v2
title: Efficient Adaptive MCMC Through Precision Estimation

description: The performance of Markov chain Monte Carlo (MCMC) algorithms like the Metropolis Hastings Random Walk (MHRW) is highly dependent on the choice of scaling matrix for the proposal distributions. A popular choice of scaling matrix in adaptive MCMC methods is to use the empirical covariance matrix (ECM) of previous samples. However, this choice is problematic if the dimension of the target distribution is large, since the ECM then converges slowly and is computationally expensive to use. We propose two algorithms to improve convergence and decrease computational cost of adaptive MCMC methods in cases when the precision (inverse covariance) matrix of the target density can be well-approximated by a sparse matrix. The first is an algorithm for online estimation of the Cholesky factor of a sparse precision matrix. The second estimates the sparsity structure of the precision matrix. Combining the two algorithms allows us to construct precision-based adaptive MCMC algorithms that can be used as black-box methods for densities with unknown dependency structures. We construct precision-based versions of the adaptive MHRW and the adaptive Metropolis adjusted Langevin algorithm and demonstrate the performance of the methods in two examples. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.6161030.v1
title: Efficient adaptive MCMC through precision estimation

description: The performance of Markov chain Monte Carlo (MCMC) algorithms like the Metropolis Hastings Random Walk (MHRW) is highly dependent on the choice of scaling matrix for the proposal distributions. A popular choice of scaling matrix in adaptive MCMC methods is to use the empirical covariance matrix (ECM) of previous samples. However, this choice is problematic if the dimension of the target distribution is large, since the ECM then converges slowly and is computationally expensive to use. We propose two algorithms to improve convergence and decrease computational cost of adaptive MCMC methods in cases when the precision (inverse covariance) matrix of the target density can be well-approximated by a sparse matrix. The first is an algorithm for online estimation of the Cholesky factor of a sparse precision matrix. The second estimates the sparsity structure of the precision matrix. Combining the two algorithms allows us to construct precision-based adaptive MCMC algorithms that can be used as black-box methods for densities with unknown dependency structures. We construct precision-based versions of the adaptive MHRW and the adaptive Metropolis adjusted Langevin algorithm and demonstrate the performance of the methods in two examples.
DOI: 10.6084/m9.figshare.6160526
title: Toxoplasma gondii seropositivity and substance use in US adults: Raw data files for NHANES III and Continuous NHANES

description: See attached Data Description document for a description of the contents of each data file.
DOI: 10.6084/m9.figshare.6160496
title: Skin Surface Film Liquid as New Migration Medium for the Determination of PAHs Released from Rubber Containing Consumer Goods

description: Exposure of consumers, in particular children, to polycyclic aromatic hydrocarbons (PAHs) via contact with consumer products has been the subject of considerable public attention over the last years. Eight PAHs with a harmonized classification as carcinogen 1B, according to the Regulation EC No 1272/2008 on classification, labeling and packaging of substances and mixtures, have been identified in plastic and rubber contained in some consumer articles, such as toys, bicycle grips or sporting goods. These constitute a potential source for dermal, or even oral, exposure. Concerning the former, it is desirable to develop easy and reliable methods for migration determination using simulated environments that mimic as realistically as possible the hydro-lipidic film on human skin composed of aqueous sweat and sebum. This work proposes a protocol for the determination of PAH release from rubber using a migration simulant that mimics real skin conditions. Various compositions of skin surface film liquid (SSFL), a mixture of aqueous sweat and sebum, were tested for their stability and suitability for the measurements. The results indicated that SSFL containing 0.2% sebum showed good agreement with relative migration rates obtained using 20% ethanol, which in past studies has proved to be a valid migration medium for this purpose. The aqueous SSFL has the advantage that it does not interact with the elastomer sample matrix. The SSFL described in this work may serve as a migration simulant for future product-to-skin migration studies, in which the simulant's properties need to realistically reflect the conditions on human skin.
DOI: 10.6084/m9.figshare.6160496.v1
title: Skin Surface Film Liquid as New Migration Medium for the Determination of PAHs Released from Rubber Containing Consumer Goods

description: Exposure of consumers, in particular children, to polycyclic aromatic hydrocarbons (PAHs) via contact with consumer products has been the subject of considerable public attention over the last years. Eight PAHs with a harmonized classification as carcinogen 1B, according to the Regulation EC No 1272/2008 on classification, labeling and packaging of substances and mixtures, have been identified in plastic and rubber contained in some consumer articles, such as toys, bicycle grips or sporting goods. These constitute a potential source for dermal, or even oral, exposure. Concerning the former, it is desirable to develop easy and reliable methods for migration determination using simulated environments that mimic as realistically as possible the hydro-lipidic film on human skin composed of aqueous sweat and sebum. This work proposes a protocol for the determination of PAH release from rubber using a migration simulant that mimics real skin conditions. Various compositions of skin surface film liquid (SSFL), a mixture of aqueous sweat and sebum, were tested for their stability and suitability for the measurements. The results indicated that SSFL containing 0.2% sebum showed good agreement with relative migration rates obtained using 20% ethanol, which in past studies has proved to be a valid migration medium for this purpose. The aqueous SSFL has the advantage that it does not interact with the elastomer sample matrix. The SSFL described in this work may serve as a migration simulant for future product-to-skin migration studies, in which the simulant's properties need to realistically reflect the conditions on human skin.
DOI: 10.6084/m9.figshare.6160451
title: 2014-18 NCAA Women's Lacrosse Scores

description: NCAA D1 Women's Lacrosse Scores 2014-2018.<br>2018 is incomplete and up to 4/17/2018 games.<br>Includes use as example for showing difference in predictions of linear probability model and logit model.
DOI: 10.6084/m9.figshare.6160397
title: Raw data table from Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure

description: Description of data. Raw data table related to Figures 2-3
DOI: 10.6084/m9.figshare.6160397.v1
title: Raw data table from Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure

description: Description of data. Raw data table related to Figures 2-3
DOI: 10.25345/c5mb42
title: MassIVE MSV000086037 - Baylor-NHP-tissue-samples-positive-mode-08-21-2020
title: Baylor monkey tissue samples with Positive mode LC-MS run. experiment date is 08-21-2020
DOI: 10.6084/m9.figshare.6160292
title: Knowledge and agency in interprofessional care: How nurses contribute to the case-construction in an Intensive Care Unit

description: This paper focuses on the epistemic and interactional resources displayed by nurses participating in medical case construction and the ways through which they make a difference in the unfolding of this activity. This paper draws on an ethnographic research in an Italian Intensive Care Unit (ICU) selected according to a purposeful sampling approach out of a national sample of 40 ICUs participating in a larger research project. Our dataset, collected over a period of six months of ethnographic observations, consisted of the observers’ field notes and log-books, audio and video-recordings of morning briefings, in-depth interviews, informal conversations and shadowing of bedside practices. For the purpose of this article, we analyzed the video-recorded morning briefings, involving nine attending physicians and three specialized nurses. Adopting a conversational analysis approach, this paper identifies the epistemic activities through which the nurses orient the physicians’ ongoing reasoning. It illustrates how the nurses’ contributions display different degrees of agency depending on the type of activity, the turn taking and the turn design. We contend that the nurses’ interactional competence in managing their epistemic resources and rights related to their professional territory of knowledge makes their knowledge relevant and contributes in constituting the case construction as an interprofessional activity. Implications, limitations and suggestions for future research are discussed.
DOI: 10.6084/m9.figshare.6160292.v2
title: Knowledge and agency in interprofessional care: How nurses contribute to the case-construction in an Intensive Care Unit

description: This paper focuses on the epistemic and interactional resources displayed by nurses participating in medical case construction and the ways through which they make a difference in the unfolding of this activity. This paper draws on an ethnographic research in an Italian Intensive Care Unit (ICU) selected according to a purposeful sampling approach out of a national sample of 40 ICUs participating in a larger research project. Our dataset, collected over a period of six months of ethnographic observations, consisted of the observers’ field notes and log-books, audio and video-recordings of morning briefings, in-depth interviews, informal conversations and shadowing of bedside practices. For the purpose of this article, we analyzed the video-recorded morning briefings, involving nine attending physicians and three specialized nurses. Adopting a conversational analysis approach, this paper identifies the epistemic activities through which the nurses orient the physicians’ ongoing reasoning. It illustrates how the nurses’ contributions display different degrees of agency depending on the type of activity, the turn taking and the turn design. We contend that the nurses’ interactional competence in managing their epistemic resources and rights related to their professional territory of knowledge makes their knowledge relevant and contributes in constituting the case construction as an interprofessional activity. Implications, limitations and suggestions for future research are discussed.
DOI: 10.6084/m9.figshare.6160292.v1
title: Knowledge and agency in interprofessional care: How nurses contribute to the case-construction in an Intensive Care Unit

description: This paper focuses on the epistemic and interactional resources displayed by nurses participating in medical case construction and the ways through which they make a difference in the unfolding of this activity. This paper draws on an ethnographic research in an Italian Intensive Care Unit (ICU) selected according to a purposeful sampling approach out of a national sample of 40 ICUs participating in a larger research project. Our dataset, collected over a period of six months of ethnographic observations, consisted of the observers’ field notes and log-books, audio and video-recordings of morning briefings, in-depth interviews, informal conversations and shadowing of bedside practices. For the purpose of this article, we analyzed the video-recorded morning briefings, involving nine attending physicians and three specialized nurses. Adopting a conversational analysis approach, this paper identifies the epistemic activities through which the nurses orient the physicians’ ongoing reasoning. It illustrates how the nurses’ contributions display different degrees of agency depending on the type of activity, the turn taking and the turn design. We contend that the nurses’ interactional competence in managing their epistemic resources and rights related to their professional territory of knowledge makes their knowledge relevant and contributes in constituting the case construction as an interprofessional activity. Implications, limitations and suggestions for future research are discussed.
DOI: 10.6084/m9.figshare.6160247
title: Concatenated File

description: Concatenated dataset of 28S, COI, and CAD used for the Euphorini study
DOI: 10.6084/m9.figshare.6160232
title: Soils of the Aversa plain (southern Italy)

description: The Aversa plain is one of the most important agricultural areas of the Campania region, combining the presence of very fertile soils, sites of great archaeological interest and growing residential urbanization. In this paper, the soil map (1:50,000 scale) of the Aversa plain is presented. Three main land systems (coastal, alluvial and foothill plains) characterized by different soil types (Andosols, Phaeozems, Cambisols, Vertisols, Arenosols, Histosols, Luvisols) have been identified. However, Andosols are the most widespread soil type (9768 ha) and, along with part of the Phaeozems and Cambisols, represent the most fertile soils of the Aversa plain (first and second classes of the land capability classification). In order to evaluate recent intense soil sealing, its impact over land capability classes was assessed during the last 60 years. Results show that soil sealing in the Aversa plain affected mainly the most fertile first- and second-class soils.
DOI: 10.6084/m9.figshare.6160232.v1
title: Soils of the Aversa plain (southern Italy)

description: The Aversa plain is one of the most important agricultural areas of the Campania region, combining the presence of very fertile soils, sites of great archaeological interest and growing residential urbanization. In this paper, the soil map (1:50,000 scale) of the Aversa plain is presented. Three main land systems (coastal, alluvial and foothill plains) characterized by different soil types (Andosols, Phaeozems, Cambisols, Vertisols, Arenosols, Histosols, Luvisols) have been identified. However, Andosols are the most widespread soil type (9768 ha) and, along with part of the Phaeozems and Cambisols, represent the most fertile soils of the Aversa plain (first and second classes of the land capability classification). In order to evaluate recent intense soil sealing, its impact over land capability classes was assessed during the last 60 years. Results show that soil sealing in the Aversa plain affected mainly the most fertile first- and second-class soils.
DOI: 10.6084/m9.figshare.6160229
title: Discovery of Novel Markers in FFPE BE-EAC Specimen_RAW DATA_For Frontiers Oncology_50_SWATH-MS_TripleTOF_Proteomics.xlsx

description: Proteomic quantification of 600+ human proteins in 20 samples of esophageal adenocarcinoma tissue, 10 samples of precancerous Barrett's esophagus tissue and 20 samples of normal squamous epithelium of the esophageal mucosa. This raw data was used as the foundation of detecting upregulated proto-oncogene tumor drivers as well as downregulated tumor suppressors. This data was also used to detect high levels chemotherapy resistance markers as well as high levels of proto-oncogenes in the precancerous Barrett's esophagus tissue.
DOI: 10.6084/m9.figshare.6160229.v1
title: Discovery of Novel Markers in FFPE BE-EAC Specimen_RAW DATA_For Frontiers Oncology_50_SWATH-MS_TripleTOF_Proteomics.xlsx

description: Proteomic quantification of 600+ human proteins in 20 samples of esophageal adenocarcinoma tissue, 10 samples of precancerous Barrett's esophagus tissue and 20 samples of normal squamous epithelium of the esophageal mucosa. This raw data was used as the foundation of detecting upregulated proto-oncogene tumor drivers as well as downregulated tumor suppressors. This data was also used to detect high levels chemotherapy resistance markers as well as high levels of proto-oncogenes in the precancerous Barrett's esophagus tissue.
DOI: 10.6084/m9.figshare.6160226
title: InfraredMotionDetector

description: A motion detector with three infrared LED and phototransistor pairs.<br>If there is nothing between a LED and phototransistor pair, corresponding output is low (0 volt).If there is something between a LED and phototransistor pair, corresponding output is high (+3.3 volt).
DOI: 10.6084/m9.figshare.6160226.v1
title: InfraredMotionDetector

description: A motion detector with three infrared LED and phototransistor pairs.<br>If there is nothing between a LED and phototransistor pair, corresponding output is low (0 volt).If there is something between a LED and phototransistor pair, corresponding output is high (+3.3 volt).
DOI: 10.6084/m9.figshare.6160181
title: OnHeadFaradayCage

description: On-head Faraday cage for electrophysiological experiments with freely-moving rats
DOI: 10.6084/m9.figshare.6160181.v1
title: OnHeadFaradayCage

description: On-head Faraday cage for electrophysiological experiments with freely-moving rats
DOI: 10.17028/rd.lboro.6160031
title: Data files for "Use of upper and lower body information in the discrimination between genuine and deceptive football actions"

description: Proportion of correct responses, z-values and d' values for response accuracy on genuine and deceptive trials by group, display format, and time of occlusion.The files are described in the associated paper which will be linked to from this record when published.
DOI: 10.17028/rd.lboro.6160031.v1
title: Data files for "Use of upper and lower body information in the discrimination between genuine and deceptive football actions"

description: Proportion of correct responses, z-values and d' values for response accuracy on genuine and deceptive trials by group, display format, and time of occlusion.The files are described in the associated paper which will be linked to from this record when published.