cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.h4uy6v
title: Occurrence Download

description: A dataset containing 5647 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pennisetum polystachion (L.) Schult.)"
 ]
}

 The dataset includes 5647 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033279-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jhdct
title: Occurrence Download

description: A dataset containing 1211 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-56.33307 71.8559, -54 71.8559, -54 73.16342, -56.33307 73.16342, -56.33307 71.8559))"
 ]
}

 The dataset includes 1211 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042053-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ipqpm
title: Occurrence Download

description: A dataset containing 708 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrences des observations de la campagne REMMOA Guyane (2008)"
 ]
}

 The dataset includes 708 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008091-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwbe3e
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis zophus (Lynch & Ardila-Robayo, 1999)"
 ]
}

 The dataset includes 168 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042051-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zaaq9v
title: Occurrence Download

description: A dataset containing 1001 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jasione maritima (Duby) L.M.Dufour ex Merino"
 ]
}

 The dataset includes 1001 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033216-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5tajg
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laticauda schistorhynchus Günther, 1874",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008091-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej2gs5
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaeocarpaceae"
 ]
}

 The dataset includes 962 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042958-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud3dqt
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jasminanthes maingayi (Hook.fil.) Rodda"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033342-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwgfpe
title: Occurrence Download

description: A dataset containing 139702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes rubrum L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 139702 records from 827 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042956-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1tbtvk
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium L.",
 "Country is Peru"
 ]
}

 The dataset includes 514 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008091-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2tnhx
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indigofera rautanenii Baker f."
 ]
}

 The dataset includes 60 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033362-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhfk5y
title: Occurrence Download

description: A dataset containing 8977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes petraeum Wulfen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8977 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042955-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svh4k6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asplenium jahandiezii (Litard.) Rouy",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026528-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3s54v
title: Occurrence Download

description: A dataset containing 3096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-148.05204 29.47918,-87.94796 29.47918,-87.94796 53.52082,-148.05204 53.52082,-148.05204 29.47918))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus vandykei (Frison, 1927)"
 ]
}

 The dataset includes 3096 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026529-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ex32ud
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Woodwardia radicans (L.) Sm.",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 154 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026530-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36wzk8
title: Occurrence Download

description: A dataset containing 9991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe",
 "Country is Croatia"
 ]
}

 The dataset includes 9991 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026532-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvvd6m
title: Occurrence Download

description: A dataset containing 9723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Trawl survey data from the Jabuka Pit area (central-eastern Adriatic Sea, Mediterranean) collected between 1956 and 1971",
 "Country is Croatia"
 ]
}

 The dataset includes 9723 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026531-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dndups
title: Occurrence Download

description: A dataset containing 1264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea (Democratic People’s Republic of), Korea, Republic of, China, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date unlikely, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Modified date unlikely, Identified date unlikely, Basis of record invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous collection, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Kaloula borealis (Barbour, 1908)"
 ]
}

 The dataset includes 1264 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026534-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugq8aq
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Richea gunnii Hook.fil."
 ]
}

 The dataset includes 393 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026533-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13843672
title: BioTISR: F-actin (3D WF)

description: 3D F-actin data of BioTISR dataset.

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.5281/zenodo.13843673
title: BioTISR: F-actin (3D WF)

description: 3D F-actin data of BioTISR dataset.

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.15468/dl.u99m8t
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arenaria provincialis Chater & G.Halliday",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026535-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14043850
title: Matrix Data CBT-IVF Study
DOI: 10.5281/zenodo.14043851
title: Matrix Data CBT-IVF Study
DOI: 10.15468/dl.4cpja3
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene velutina Pourr. ex Loisel.",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 58 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026536-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13843182
title: BioTISR: Mitochondria (3D WF)

description: This dataset is part of BioTISR dataset.

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.5281/zenodo.13843183
title: BioTISR: Mitochondria (3D WF)

description: This dataset is part of BioTISR dataset.

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.15468/dl.749rbh
title: Occurrence Download

description: A dataset containing 978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea (Democratic People’s Republic of), Korea, Republic of, China, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date unlikely, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Modified date unlikely, Identified date unlikely, Basis of record invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous collection, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Onychodactylus koreanus Min, Poyarkov & Vieites, 2012"
 ]
}

 The dataset includes 978 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026537-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkwc8t
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica insularis Moris",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026539-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/9xac-eb50
title: 1771 Kerguelen expedition

description: This dataset describes the 1771-1772 voyages of the Berryer and then the Fortune under Captain Kerguelen, and the Gros Venture under Captain de Saint Alouarn

Software/equipment used to create/collect the data: excel, JCU Libraries 

Software/equipment used to manipulate/analyse the data: TLCMap