cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.72rh2/1
title: Apateodus corneti RGM 446950

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/2
title: Apogon macrolepis IRSNB 647

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/3
title: Apsopelix anglicus NHMUK PV P9890

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.77t01s2/1
title: Appendices 2-5 Cattano et al DRYAD

description: Literature data used for the meta-analyses to assess eco-physiological and behavioural responses, along with response variables, category levels, CO2 treatment (range), duration, metrics and effect sizes. File type: .xls. Data are presented in four different excel sheets: Ap 2 Summary table; Ap 3 Ecophysiological response; Ap 4 Behavioral response; Ap 5 extreme pCO2
DOI: 10.5061/dryad.b63r7v0/1
title: Enzmann&Nonacs JAE all individual female and male data

description: The dry weight and head widths of each ant (Pogonomyrmex salinus) measured for this study, with colony ID and year of collection.
DOI: 10.5061/dryad.c699f/1
title: Kodis_ENMScript_Final

description: This code shows how to retrieve and prepare data for an ecological niche model and then use that data to tune and create a Maxent model with present and future projections.
DOI: 10.5061/dryad.cc145b6/2
title: maledata_for Table3 & Fig3

description: the raw relative fitness data of male zebra finches
DOI: 10.5061/dryad.cc145b6/3
title: data_for Fig4

description: summary data for Figure 4
DOI: 10.5061/dryad.cc145b6/4
title: data_for Fig5

description: data from other Labs, for Figure 5
DOI: 10.5061/dryad.cc145b6/5
title: data_for Fig6

description: data for the meta-analysis, Figure 6
DOI: 10.5061/dryad.cc145b6/6
title: meta_rawdata

description: the original raw data extracted from literature for meta-analysis
DOI: 10.5061/dryad.db6177b/10
title: strata.cucumbers.717ind

description: strata file with the population numbers used when converting VCF to other formats
DOI: 10.5061/dryad.db6177b/2
title: 2719neutral_snps_noAK

description: Allele frequencies across neutral SNPs (excluding Alaska sites) used for spatial eigenfunction analysis
DOI: 10.5061/dryad.db6177b/3
title: 24sites_lat_long

description: Geographic coordinates of the sampling locations
DOI: 10.5061/dryad.db6177b/4
title: AEM_weight_all_vectors

description: AEM vectors used as input for RDA; edge weights used to compute AEM vectors are based on connectivity probabilities between sites
DOI: 10.5061/dryad.db6177b/5
title: dbMEM_straight_all_vectors

description: dbMEM vectors computed from Euclidean distances between sites used as input for RDA
DOI: 10.5061/dryad.db6177b/6
title: dbMEM_inwater_all_vectors

description: dbMEM vectors computed from in-water distances between sites used as input for RDA
DOI: 10.5061/dryad.db6177b/7
title: AEM_dbMEM_RDA_script

description: script for computing AEM and dbMEM spatial variables and performing redundancy analysis
DOI: 10.5061/dryad.db6177b/8
title: dapc

description: Script to perform the DAPC analysis
DOI: 10.5061/dryad.db6177b/9
title: filtered_2719neutral_snps.recode

description: Filtered .vcf file with 2,719 neutral SNPs
DOI: 10.5061/dryad.dh3h417/1
title: Experimental pond brain size measurements

description: Measurements of the size of four different parts of the brain in threespine sticklebacks collected from experimental ponds. See readme for complete breakdown of columns etc.
DOI: 10.5061/dryad.dh3h417/2
title: Common garden brain size measurements

description: Measurements of the size of four different parts of the brain in threespine sticklebacks collected from experimental ponds as fry and reared in a common laboratory environment. See readme for complete breakdown of columns etc.
DOI: 10.5061/dryad.fn664f0/17
title: s16
DOI: 10.5061/dryad.fn664f0/18
title: s17
DOI: 10.5061/dryad.fn664f0/19
title: s18
DOI: 10.5061/dryad.fn664f0/20
title: s19
DOI: 10.5061/dryad.fn664f0/21
title: s20
DOI: 10.5061/dryad.fn664f0/22
title: s21
DOI: 10.5061/dryad.fn664f0/23
title: s22
DOI: 10.5061/dryad.fn664f0/24
title: s23
DOI: 10.5061/dryad.gh90f5f/1
title: kravchenko_2017_pnas_field_scale

description: The file “kravchenko_2017_pnas_field_scale.xlsx” consists of six worksheets that contain: the agronomic yields for corn, soybean, and wheat from one field-scale experiment and two plot-scale experiments for the period 2007-2012; precipitation data over the study period; and the analysis of deep soil cores from the field-scale experiment.
DOI: 10.5061/dryad.n70q6/1
title: SNP genotypes for 6833 loci from 21 mountain hares (Lepus timidus) and 27 brown hares (Lepus europaeus)

description: SNP genotypes for 6833 loci from 21 mountain hares (Lepus timidus) and 27 brown hares (Lepus europaeus) from Sweden and Finland. Data sheet includes sample number, sampling location coordinates, mtDNA haplotype and notes for species co-existence at the sampling location (sympatry/allopatry).
DOI: 10.5061/dryad.nc285/1
title: Data and R syntax to reproduce analyses

description: Data on oseltamivir and amantadine use by month in Hong Kong, 2000 through 2015
DOI: 10.5061/dryad.np58q/1
title: Summary - PLOS Paper v2
DOI: 10.5061/dryad.r01h2/1
title: OTU_Table

description: OTU Table in a *.txt format used for data processing
DOI: 10.5061/dryad.rj61p/1
title: Zahr cytokines in pg-per-ml

description: These are the raw, pg/mL data from the shortly to be published PlosOne paper: Peripheral TNFα elevations in Alcohol Use Disorders are associated with Hepatitis C Infection, Natalie M. Zahr, Priya Asok, Edith V. Sullivan, & Adolf Pfefferbaum. Based on the recommendations of the Human Immune Monitoring Center (HIMC), http://iti.stanford.edu/himc.html, we used mean florescence intensity (MFI) in the manuscript. However, here we release the pg/mL data as that seems to be more useful for general use. Whole blood samples (n=223), collected in lavender EDTA tubes between March 2013 and October 2016 were centrifuged (500 rcf at room temperature for 10min). Plasma was transferred to 1.5mL conical tubes, centrifuged at 13,000 rcf at room temperature for another 10min, and the resulting supernatant was transferred to 1.5mL conical tubes for storage at −80° C until analysis by the HIMC. The HIMC, which continually benchmarks processes to minimize technical variability (Maecker et al., 2005), performed immunological assays. Human 41-plex kits (HCYTOMAG-60K, 7 kits, each able to run 42 samples) were purchased from EMD Millipore and used according to the manufacturer’s recommendations with modifications as described. Briefly, samples were mixed with antibody-linked magnetic beads on a 96-well plate and incubated overnight incubation at 4°C with shaking. Cold and Room temperature incubation steps were performed on an orbital shaker at 500-600 rpm. Plates were washed twice with wash buffer in a Biotek ELx405 washer. Following one hour incubation at room temperature with biotinylated detection antibody, streptavidin fluorochrome (i.e., streptavidin-PE) was added for 30 minutes with shaking. Plates were washed as above and PBS added to wells for reading in the Luminex 200 Instrument with a lower bound of 50-100 beads per sample per cytokine. Each sample was measured in duplicate. Custom assay control beads by Radix Biosolutions were added to all wells.
DOI: 10.5061/dryad.s4d28/4
title: Time lapse microscopy - Experiment 1

description: Time lapse microscopy video of microglia and glioma movement for Experiment 1.
DOI: 10.5061/dryad.s70m4/1
title: Behavioral data, caterpillar rearing data, and reflectance data

description: This excel sheet contains:  1) raw behavioral data for individual butterflies as they searched for and landed on host plants in three different environments, 2) individual-level summaries of performance in behavioral trials (calculated from the raw behavioral data), 3) rearing data for caterpillars raised on different types of host plants, and 4) reflectance spectra for host and non-host plant species used in trials.
DOI: 10.5061/dryad.s9r98/2
title: survey1

description: Full data of the survey, except column Country is left empty to prevent identification of individuals. Columns 124-137 are not from the questionnaire but calculated based on other columns (see file survey1_questions).
DOI: 10.5061/dryad.s9r98/3
title: survey1_questions

description: Title names and explanations for columns in the survey
DOI: 10.5061/dryad.st350/1
title: Terrestrial Mammal Displacement Data

description: This data file includes median (0.5 quantile) and long-distance (0.95 quantile) displacement distances for 803 individuals spanning 57 terrestrial mammal species. Also included are mean body mass, trophic guild, mean Normalised Difference Vegetation Index (NDVI) and mean human footprint index values for each individual. Displacement values are in kilometres and body mass values are in grams. The displacement and body mass values are log10 transformed and the NDVI values are scaled. Please note that each row within a time interval represents a different individual. Please see the associated manuscript and supplementary materials for details on the data sources and calculation methods.
DOI: 10.5061/dryad.vj5pn/1
title: White-throated sparrow reproductive senescence data

description: This data file contains information regarding annual reproductive success across the lifespan of individual white-throated sparrows (Zonotrichia albicollis).  Lifetime reproductive success is also tabulated, as is longevity.  In addition, information about the number of extrapair offspring is provided.
DOI: 10.5061/dryad.vj5pn/2
title: Lifetime clutch sizes and hatching rates

description: This data file contains information about clutch sizes and hatching success across the lifespan of individual white-throated sparrows (Zonotrichia albicollis).  Longevity of individuals is also provided.
DOI: 10.5061/dryad.2tp53gr/1
title: Data matrix Neopterygian phylogeny: the merger assay. LopezArbarello-Sferco

description: Character-taxon matrix of Neopterygian phylogeny: the merger assay. (99 species - 339 morphological characters).
DOI: 10.5061/dryad.2tp53gr/2
title: Strict consensus tree

description: Strict consensus tree of 24 most parsimonious trees. Equal weighted analysis.
DOI: 10.5061/dryad.2tp53gr/3
title: MPT Equal weighted analysis

description: 24 most parsimonious trees. Equal weighted analysis.
DOI: 10.5061/dryad.2tp53gr/4
title: MPT implied weighting k3

description: Most parsimonious tree obtained in the analysis under implied weighting using a constant (k-value) of 3 (k3).
DOI: 10.5061/dryad.2tp53gr/5
title: MPT implied weighting k8

description: Most parsimonious tree obtained in the analysis under implied weighting using a constant (k-value) of 8 (k8).
DOI: 10.5061/dryad.36n6p34/1
title: Measurements of early post-embryonic developmental stages of Ellipsostrenua granulosa

description: This data file contains three measured parameters of early post-embryonic developmental stages of Ellipsostrenua granulosa, in particular cranidial length, cranidial width and intergenal spine separation.
DOI: 10.5061/dryad.474nd/15
title: Supplementary materials_Tables_S5

description: Regression coefficients for the number of SNPs/locus in relation to the number of individuals/locus. The coefficients are in the scale of the linear predictor of a generalized linear model with negative binomial error distribution and a logarithmic link function.
DOI: 10.5061/dryad.474nd/16
title: Supplementary materials_Tables_S6

description: Coefficients of regression models explaining variation in bootstrap residuals (i.e. the effect of branch length on bootstrap values is removed).
DOI: 10.5061/dryad.474nd/17
title: Supplementary materials_Tables_S7

description: The number and proportion of clusters at the sequencing depth (d) in the final data sets (d ≥ 3) with those of observed showing depth less than 3.
DOI: 10.5061/dryad.474nd/18
title: bootstrap_DRYAD_Rscript

description: R script to analyse variation in the bootstrap residuals with linear models
DOI: 10.5061/dryad.474nd/19
title: dropout_DRYAD_Rscript

description: R script to analyse locus and SNP dropout patterns at different phylogenetic depths
DOI: 10.5061/dryad.474nd/20
title: locus conservativeness_DRYAD_Rscript

description: R script to analyse locus conservativeness correlated with SNPs and patterns of locus and SNP dropout effects on nodel confidence
DOI: 10.5061/dryad.4r55n/1
title: Leaf Economics traits for wheat and maize

description: Data compilation for: Inter- and intraspecific variation in leaf economics traits in wheat and maize. Data are compiled through both primary literature, as well as the TRY Functional Trait database. All data sources for each trait observation are specified.
DOI: 10.5061/dryad.50d1t3p/1
title: Experimental data of microcosm food web

description: Experimental data on number of individuals in different predator treatments of microcosm food web, used to analyze the predictive power of body size based ATN food web model.
DOI: 10.5061/dryad.5756sg0/1
title: Community composition

description: Relative abundance of different taxa in 40 day serial transfer microcosm experiment
DOI: 10.5061/dryad.5756sg0/2
title: RP4 recipients

description: RP4 plasmid recipient taxa at the end-point of 40 day serial transfer microcosm experiment (identified using epicPCR)
DOI: 10.5061/dryad.5756sg0/3
title: RP4 recipients pooled replicates

description: RP4 recipient taxa based on pooled replicates from end-point of 40-day serial transfer microcosm experiment
DOI: 10.5061/dryad.5jm7b/1
title: LMM_scheme

description: This scheme (side view) was used for land-marks digitizing. Landmarks in the Tps-files are given according this order. Here also some addition land-marks that can be used for the linear measurements calculations i.e. fin length and width etc.
DOI: 10.5061/dryad.5jm7b/2
title: landarks BB

description: Tps file for Bigmouth (B-) morph
DOI: 10.5061/dryad.5jm7b/3
title: landmarks_SS

description: Tps file for Smallmouth (S-) morph
DOI: 10.5061/dryad.5jm7b/4
title: WW_landmarks

description: Tps file for White (W-) morph
DOI: 10.5061/dryad.5jm7b/5
title: LL_landmarks

description: Tps file for Longhead (L-) morph
DOI: 10.5061/dryad.5jm7b/6
title: NN1_landmarks

description: Tps file for Nosed1 (N1-) morph (side view)
DOI: 10.5061/dryad.5jm7b/7
title: NN2_landmarks

description: Tps file for Nosed2 (N2-) morph (side view)
DOI: 10.5061/dryad.5jm7b/8
title: NN3_landmarks

description: Tps file for Nosed3 (N3-) morph (side view)
DOI: 10.5061/dryad.62br8t6/1
title: Data from Keiser et al 2018 - Behavioral Ecology - Social context and infection risk
DOI: 10.5061/dryad.72rh2/10
title: Sciaenuropsis turneri NHMUK PV 644a

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/11
title: CT scan settings

description: Parameters of CT scans resulting in data examined in this study. The specimens were scanned with a Metris X-Tek HMX ST CT scanner in the Imaging and Analysis Centre of the Natural History Museum, London.
DOI: 10.5061/dryad.72rh2/12
title: Rhinocephalus planiceps NHMUK PV P65195

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/4
title: ‘Brachygnathus tenuiceps’ NHMUK PV P643

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/5
title: Dentex laekeniensis IRSNB 645

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/6
title: Eurypterygii indet. NHMUK PV P52492

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/7
title: Holocentridae indet. NJSM GP12145

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/8
title: Hoplopteryx lewesiensis NHMUK PV 41105a

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.72rh2/9
title: Osmeroides sp NHMUK PV 39433

description: Supporting data in zipped file, including: CT image stack (.tiff), otolith surface file(s) (.ply), and Mimics file (.mcs).
DOI: 10.5061/dryad.7jq46/1
title: Sprunger_Robertson_2018_Geoderma_Dryad
DOI: 10.5061/dryad.bs5hn51/1
title: Kleyheeg et al 2018 PLOS ONE

description: Raw seed trait and germination data from Kleyheeg et al. (2018) Interactions between seed traits and digestive processes determine the germinability of bird-dispersed seeds, PLOS ONE.
DOI: 10.5061/dryad.ck7pt/1
title: Tropical South America Diatom and waterbodies database

description: This database consists of two different datasets: diatom presence/absence data and associated environmental variables of the waterbodies of the individual regions of study
DOI: 10.5061/dryad.db6177b/11
title: filtered_2719neutral_snps_genepop

description: 2,719 neutral SNPs in genepop format for use in building the population graph
DOI: 10.5061/dryad.db6177b/12
title: popgraph

description: Script for generating the population graph
DOI: 10.5061/dryad.fn664f0/25
title: s24
DOI: 10.5061/dryad.fn664f0/26
title: s25
DOI: 10.5061/dryad.fn664f0/27
title: s26
DOI: 10.5061/dryad.fn664f0/28
title: s27
DOI: 10.5061/dryad.fn664f0/29
title: s28
DOI: 10.5061/dryad.fn664f0/30
title: s29
DOI: 10.5061/dryad.fn664f0/31
title: s30
DOI: 10.5061/dryad.kc041/1
title: Sumner-Rooney et al. S1

description: Arm segments from Ophiocoma wendtii. The 3D data included here were generated from x-ray tomography scans of specimens of brittle stars Ophiocoma wendtii, Ophiocoma echinata and Ophiocoma pumila. For full methodology, please refer to the Method Details text. All models are downsized for practicality in PDF form; STL files with full detail are available on request. 3D files require Adobe Acrobat or Acrobat Reader (v. 7 or higher) for full interactive functionality. Use left-click to rotate, Ctrl+click to pan, and shift+click to zoom. Default view is the dorsal surface.
DOI: 10.5061/dryad.kc041/2
title: Sumner-Rooney et al. S2

description: Arm segments from Ophiocoma echinata. The 3D data included here were generated from x-ray tomography scans of specimens of brittle stars Ophiocoma wendtii, Ophiocoma echinata and Ophiocoma pumila. For full methodology, please refer to the Method Details text. All models are downsized for practicality in PDF form; STL files with full detail are available on request. 3D files require Adobe Acrobat or Acrobat Reader (v. 7 or higher) for full interactive functionality. Use left-click to rotate, Ctrl+click to pan, and shift+click to zoom. Default view is the dorsal surface.
DOI: 10.5061/dryad.nj1qv/1
title: Individuality of a clonal ant for Dryad

description: All the used data in the article entitled "Adaptive phenotypic variation among clonal ant workers" .
DOI: 10.5061/dryad.nj344m5/1
title: Rodriguez-Zarate et al_EnvironmentalDistanceMMatrices

description: The file contains environmental distance matrices for four variables considered in the study.
DOI: 10.5061/dryad.nj344m5/2
title: Rodriguez-Zarate et al_Genetic Data

description: Files indicate microsatellite genetic data from 10 Loci for all sampled nesting sites.
DOI: 10.5061/dryad.p63d200/1
title: ACE_Sex_PlosOne_Mayhugh_etal

description: ACE Score and Sex of participants
DOI: 10.5061/dryad.ph104/1
title: Scan-path data

description: This file contains the scan-paths of the subjects that performed the "Scene construction task" described in the paper "Human visual exploration reduces uncertainty about the sensed world". There are some additional files that can be used to regenerate the figures and results in this paper.
DOI: 10.5061/dryad.qt3v0t4/1
title: TML in GI cancer uploaded
DOI: 10.5061/dryad.r01h2/2
title: Toad Metadata

description: Metadata used for data processing in a *.txt format.
DOI: 10.5061/dryad.t29p3/1
title: Vertical exploration data

description: This .rar contains all required data for Vertical exploration and dimensional modularity in mice. The directory "Track Data" and its subdirectories contain CSV files for all mice with the 2D tracking coordinates calculated in Ethovision XT. The directory "RSEE data" and subdirectories contain Rdata files for all mice with initial data preparation. The directory "Individual Analysis Data" and its subdirectories contain Rdata files for all mice with analysis results.
DOI: 10.5061/dryad.t6k8f/1
title: Spatial and temporal patterns of nest distribution influences sexual selection in a marine fish

description: Data on male size and egg mass area (reproductive success) from a field experiment manipulating breeding nest aggregation and time to accumulate reproductive success.
DOI: 10.5061/dryad.tf536/1
title: Preite_etal_2018_EcolEvol_HpaII_Rawdata_and_Consensus

description: Data from: Preite et al. 2018 (DOI: 10.1002/ece3.3871) Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages. Excel file shows HpaII raw data (methylation sensitive -AFLPs), consensus and deviation from consensus across generations.
DOI: 10.17632/5jb9g24zjr.1
title: Data for: Probabilistic Vehicle Routing Problem with Service Guarantees

description: This file includes the vehicle routing instances with uncertain demand information.
DOI: 10.17632/6mwjvgfd47.2
title: Data for: Phylogenomic analysis of Fundulidae (Teleostei: Cyprinodotiformes) using RNA-sequencing Data

description: These files provide the assembled, concatenated and aligned RNAseq sequences for sixteen ingroup fundulidae species and referenced outgroups for 152 genes. Included are the FASTA files, nexus files, and partitions associated with the concatenated sequences.
DOI: 10.17632/778sgd7fdr.1
title: Data for: Time Kept Equal, Generating Multiple-choice Test Questions is Less Effective for Retention than Restudy

description: Online supplementary materials, expository text and instruction to participants.
DOI: 10.17632/9wmmk57jdm.1
title: Data for: Characterization of Allelochemicals from the Rhizosphere Soil of Pinellia ternate (Thnub.) and Their Inhibition Activity on Protective Enzymes

description: Original data of this work.