cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7928526
title: SpliceAI_rocksdb_hg38_chr18

description: SpliceAI RocksDB for chromosome 18 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.5281/zenodo.7928525
title: SpliceAI_rocksdb_hg38_chr18

description: SpliceAI RocksDB for chromosome 18 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.6084/m9.figshare.22580455
title: PD-L1/CD80 regulates endothelial cells barrier function through mtROS/NLRP3/caspase1 mediated pyroptotic pathway

description: Data are expressed as the mean ±SEM and analyzed using one way analysis of variance (ANOVA) followed by TUKEY test as a post hoc test. Statistical analysis was performed using Prism 6.0 (GraphPad Software, San Diego, CA) and a statistical significance was set at P &lt; 0.05.
DOI: 10.6084/m9.figshare.22580455.v1
title: PD-L1/CD80 regulates endothelial cells barrier function through mtROS/NLRP3/caspase1 mediated pyroptotic pathway

description: Data are expressed as the mean ±SEM and analyzed using one way analysis of variance (ANOVA) followed by TUKEY test as a post hoc test. Statistical analysis was performed using Prism 6.0 (GraphPad Software, San Diego, CA) and a statistical significance was set at P &lt; 0.05.
DOI: 10.34740/kaggle/dsv/5708006
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.7944769
title: FRIM - Fruit Integrative Modelling

description: The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.
description: Funding information: FED Bordeaux University « Projets Emergents » MetaboFla
description: {"references": ["Biais B, B\u00e9nard C, Beauvoit B, Colombi\u00e9 S, Prodhomme D, M\u00e9nard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat J-P, Sweetlove L, G\u00e9nard M, Gibon Y. 2014. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology 164, 1204-1221"]}
DOI: 10.5281/zenodo.7944768
title: FRIM - Fruit Integrative Modelling

description: The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.
description: Funding information: FED Bordeaux University « Projets Emergents » MetaboFla
description: {"references": ["Biais B, B\u00e9nard C, Beauvoit B, Colombi\u00e9 S, Prodhomme D, M\u00e9nard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat J-P, Sweetlove L, G\u00e9nard M, Gibon Y. 2014. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology 164, 1204-1221"]}
DOI: 10.5281/zenodo.5608459
title: Last Interglacial sea-level data points from Northwest Europe

description: This dataset contains known preserved Last Interglacial (Eemian, Ipswichian, MIS 5e, MIS 5) sea level proxies for NW Europe: from along the shores of the English Channel and North Sea, and from their offshore areas. It includes 141 sea-level indicator data points (from from in and around the North Sea (35 entries in Netherlands, 10 Belgium, 16 in Germany, 17 in Denmark, 8 in Britain) and the English Channel (28 entries for the British and 25 for the French side, 3 on the Channel Isles), believed to be a representative and fairly complete inventory and assessment coming from some 80 published sites. The database also includes a modest subselection of data points from older interglacials (six sites), for comparative use. The dataset has been constructed in and has been exported from the World Atlas of Last Interglacial Shorelines (WALIS) database (https://warmcoasts.eu/world-atlas.html). The sea level proxies in majority are obtained from localities with well developed lithostratigraphic (MIS-6 aged ‘Saalian’ glaciogenic landforms and deposits as the substrate), morpho-stratigraphic (position in terrace flights), and biostratigraphic constraints (Lusitanian molluscan, foraminifera, pollen successions, other). Amino-Acid Racemization information is also prominent, albeit for many sites the older, lesser quality applications of that technique. The majority of European continental sites have chronostratigraphic age-control (regional encoding scheme included in dataset) notably by correlation to regional Pollen Association Zones with varve-count based durations (reckoned to span 11,000 years of temperate interglacial conditions; matching a good part of MIS 5e), and/or Foraminiferal Association Zones (echoing marine environmental and paleogeographic changes), and/or from AAR zones (majority of British sites, selected sites of mainland NW Europe). In all regions, some of marine deposits and bracketing terrestrial ones have also been independently dated using luminescence (IRSL, OSL, TL), U-series and ESR techniques.
DOI: 10.5281/zenodo.5608458
title: Last Interglacial sea-level data points from Northwest Europe

description: This dataset contains known preserved Last Interglacial (Eemian, Ipswichian, MIS 5e, MIS 5) sea level proxies for NW Europe: from along the shores of the English Channel and North Sea, and from their offshore areas. This V2 version includes 146 sea-level indicator data points from in and around the North Sea (35 entries in Netherlands, 10 Belgium, 23 in Germany, 17 in Denmark, 9 in Britain) and the English Channel (24 entries for the British and 25 for the French side, 3 on the Channel Isles), believed to be a representative and fairly complete inventory and assessment coming from some 80 published sites. The database also includes a modest subselection of data points from older interglacials (six sites), for comparative use. The dataset has been constructed in and has been exported from the World Atlas of Last Interglacial Shorelines (WALIS) database (https://warmcoasts.eu/world-atlas.html). The sea level proxies in majority are obtained from localities with well developed lithostratigraphic (MIS-6 aged ‘Saalian’ glaciogenic landforms and deposits as the substrate), morphostratigraphic (position in terrace flights), Amino-Acid Racemization, and biostratigraphic constraints ('Lusitanian' molluscan, foraminifera, pollen successions, other). The majority of European continental sites have chronostratigraphic age-control (regional encoding scheme included in dataset) notably by correlation to regional Pollen Association Zones with varve-count based durations (reckoned to span at least 11,000 years of temperate interglacial conditions; matching a good part of MIS 5e), and/or Foraminiferal Association Zones (echoing marine environmental and paleogeographic changes), and/or from AAR zones (majority of British sites, selected sites of mainland NW Europe; albeit for many sites older, lesser quality applications of the technique). In all regions, some of the marine deposits and bracketing terrestrial ones have also been independently dated using luminescence (IRSL, OSL, TL), U-series and ESR techniques.
description: From V1 to V2/V2.1 the main changes are: a) improved Upper and Lower age attributions to regional chronostratigraphic units: PAZs E1-E6 now reckoned to time within 129-112.5 ka, was 127-110 ka in V1). b) improved NW German data (Emden, Wadden Isles, Land Hadeln) based on Hoefle et al. 1985: coordinates revised, split down in SLIPs, TL and ML data points improved. The net increase from 141 to 146 data points is due to this revision. c) updated referencing, d) In V2.1 we fixed a WALIS parent database interface/export error, that for TL and ML records had affected the contents of four fields in the [Summary of RSL data points] worksheet. These fields should only have contained data for records of SLIP type, in V2 they accidently contained erroneous data and ambiguous '0' values for record of TL and ML type. The fix was to blank these fields out.
DOI: 10.5281/zenodo.6478094
title: Last Interglacial sea-level data points from Northwest Europe

description: This dataset contains known preserved Last Interglacial (Eemian, Ipswichian, MIS 5e, MIS 5) sea level proxies for NW Europe: from along the shores of the English Channel and North Sea, and from their offshore areas. This V2 version includes 146 sea-level indicator data points from in and around the North Sea (35 entries in Netherlands, 10 Belgium, 23 in Germany, 17 in Denmark, 9 in Britain) and the English Channel (24 entries for the British and 25 for the French side, 3 on the Channel Isles), believed to be a representative and fairly complete inventory and assessment coming from some 80 published sites. The database also includes a modest subselection of data points from older interglacials (six sites), for comparative use. The dataset has been constructed in and has been exported from the World Atlas of Last Interglacial Shorelines (WALIS) database (https://warmcoasts.eu/world-atlas.html). The sea level proxies in majority are obtained from localities with well developed lithostratigraphic (MIS-6 aged ‘Saalian’ glaciogenic landforms and deposits as the substrate), morphostratigraphic (position in terrace flights), Amino-Acid Racemization, and biostratigraphic constraints ('Lusitanian' molluscan, foraminifera, pollen successions, other). The majority of European continental sites have chronostratigraphic age-control (regional encoding scheme included in dataset) notably by correlation to regional Pollen Association Zones with varve-count based durations (reckoned to span at least 11,000 years of temperate interglacial conditions; matching a good part of MIS 5e), and/or Foraminiferal Association Zones (echoing marine environmental and paleogeographic changes), and/or from AAR zones (majority of British sites, selected sites of mainland NW Europe; albeit for many sites older, lesser quality applications of the technique). In all regions, some of the marine deposits and bracketing terrestrial ones have also been independently dated using luminescence (IRSL, OSL, TL), U-series and ESR techniques.
description: From V1 to V2 the main changes are: - improved Upper and Lower age attributions to regional chronostratigraphic units: PAZs E1-E6 now reckoned to time within 129-112.5 ka, was 127-110 ka in V1) - improved NW German data (Emden, Wadden Isles, Land Hadeln) based on Hoefle et al. 1985: coordinates revised, split down in SLIPs, TL and ML data points improved. The net increase from 141 to 146 data points is due to this revision. - updated referencing,
DOI: 10.5281/zenodo.7944196
title: Last Interglacial sea-level data points from Northwest Europe

description: This dataset contains known preserved Last Interglacial (Eemian, Ipswichian, MIS 5e, MIS 5) sea level proxies for NW Europe: from along the shores of the English Channel and North Sea, and from their offshore areas. This V2 version includes 146 sea-level indicator data points from in and around the North Sea (35 entries in Netherlands, 10 Belgium, 23 in Germany, 17 in Denmark, 9 in Britain) and the English Channel (24 entries for the British and 25 for the French side, 3 on the Channel Isles), believed to be a representative and fairly complete inventory and assessment coming from some 80 published sites. The database also includes a modest subselection of data points from older interglacials (six sites), for comparative use. The dataset has been constructed in and has been exported from the World Atlas of Last Interglacial Shorelines (WALIS) database (https://warmcoasts.eu/world-atlas.html). The sea level proxies in majority are obtained from localities with well developed lithostratigraphic (MIS-6 aged ‘Saalian’ glaciogenic landforms and deposits as the substrate), morphostratigraphic (position in terrace flights), Amino-Acid Racemization, and biostratigraphic constraints ('Lusitanian' molluscan, foraminifera, pollen successions, other). The majority of European continental sites have chronostratigraphic age-control (regional encoding scheme included in dataset) notably by correlation to regional Pollen Association Zones with varve-count based durations (reckoned to span at least 11,000 years of temperate interglacial conditions; matching a good part of MIS 5e), and/or Foraminiferal Association Zones (echoing marine environmental and paleogeographic changes), and/or from AAR zones (majority of British sites, selected sites of mainland NW Europe; albeit for many sites older, lesser quality applications of the technique). In all regions, some of the marine deposits and bracketing terrestrial ones have also been independently dated using luminescence (IRSL, OSL, TL), U-series and ESR techniques.
description: From V1 to V2/V2.1 the main changes are: a) improved Upper and Lower age attributions to regional chronostratigraphic units: PAZs E1-E6 now reckoned to time within 129-112.5 ka, was 127-110 ka in V1). b) improved NW German data (Emden, Wadden Isles, Land Hadeln) based on Hoefle et al. 1985: coordinates revised, split down in SLIPs, TL and ML data points improved. The net increase from 141 to 146 data points is due to this revision. c) updated referencing, d) In V2.1 we fixed a WALIS parent database interface/export error, that for TL and ML records had affected the contents of four fields in the [Summary of RSL data points] worksheet. These fields should only have contained data for records of SLIP type, in V2 they accidently contained erroneous data and ambiguous '0' values for record of TL and ML type. The fix was to blank these fields out.
DOI: 10.6084/m9.figshare.22891634
title: BUSCO_output_to_LSUs1_3

description: Executable jar file with READ_ME and test files. <br>
DOI: 10.6084/m9.figshare.22891634.v1
title: BUSCO_output_to_LSUs1_3

description: Executable jar file with READ_ME and test files. <br>
DOI: 10.5281/zenodo.7944793
title: forpus_passerinus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7944792
title: forpus_passerinus_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.22673002
title: Find_and_replace_names.jar

description: This helps to exchange acc. nos. with chromosome IDs in lists or texts
DOI: 10.6084/m9.figshare.22673002.v1
title: Find_and_replace_names.jar

description: This helps to exchange acc. nos. with chromosome IDs in lists or texts
DOI: 10.5281/zenodo.7665007
title: Multi-Posture Leg Tracker Data Set

description: This data repository contains sensor data depicting people in different postures. The data contains 2D radar data generated by indurad iSDR-C, 2D laser data generated by SICK S300, and depicts the postures "standing" and "squatting" complemented by background data. The robot hardware is a Robotnik Summit XL Steel with omniwheels. See README file for extensive information on data content and meta-data. The data is directly related to following publication, which we appreciate to be cited with the data set: Mandischer N., Hou R., Corves B.:<br> "Multiposture leg tracking for temporarily vision restricted environments based on fusion of laser and radar sensor data", Journal of Field Robotics, Wiley. DOI: 10.1002/rob.22195 The data is loosely related to following publication: Mandischer N., Koop I., Granich A., Heberling D., Corves B.:<br> "Radar Tracker For Human Legs Based On Geometric And Intensity Features", European Signal Processing Conference 2021, online. DOI: 10.23919/EUSIPCO54536.2021.9616134
DOI: 10.5281/zenodo.7938077
title: Multi-Posture Leg Tracker Data Set

description: This data repository contains sensor data depicting people in different postures. The data contains 2D radar data generated by indurad iSDR-C, 2D laser data generated by SICK S300, and depicts the postures "standing" and "squatting" complemented by background data. The robot hardware is a Robotnik Summit XL Steel with omniwheels. See README file for extensive information on data content and meta-data. The data is directly related to following publication, which we appreciate to be cited with the data set: Mandischer N., Hou R., Corves B.:<br> "Multiposture leg tracking for temporarily vision restricted environments based on fusion of laser and radar sensor data", Journal of Field Robotics, Wiley. DOI: 10.1002/rob.22195 The data is loosely related to following publication: Mandischer N., Koop I., Granich A., Heberling D., Corves B.:<br> "Radar Tracker For Human Legs Based On Geometric And Intensity Features", European Signal Processing Conference 2021, online. DOI: 10.23919/EUSIPCO54536.2021.9616134
DOI: 10.6084/m9.figshare.22892237
title: <strong>Table 1</strong> Annual averages of air temperature and precipitation

description: The research was conducted in 2020–2022 on the territory of the Agricultural Company “Kolos” JSC, located in the Stavropol Territory. The soil of the experimental plot is represented mainly by common chernozem. Studies were conducted to determine the relationship of pigment indices (PSSRAa and PSSRb) in crops of soft winter wheat (variety Grom) and in the models “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI” on different agricultural backgrounds in the unstable moisture zone. The study showed that chlorophyll indices (PSSRAa and PSSRb) are high in the seedling phase and markedly high in the tillering phase in all agricultural backgrounds. The models “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI” showed high regression dependence of the variables in the seedling phase. Simultaneously, the model “PSSRAa, PSSRb – SIPI” is inversely proportional. During the tillering phase of “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI,” the relationship between the variables decreased. However, the correlation in the “PSSRAa, PSSRb – SIPI” model improves, probably due to increased chlorophyll concentration (PSSRb). Consequently, the established relationship of the indices makes it possible to fix the vegetative phase of the development of winter wheat plants and display the state of the cultivated crop.
DOI: 10.6084/m9.figshare.22892237.v1
title: <strong>Table 1</strong> Annual averages of air temperature and precipitation

description: The research was conducted in 2020–2022 on the territory of the Agricultural Company “Kolos” JSC, located in the Stavropol Territory. The soil of the experimental plot is represented mainly by common chernozem. Studies were conducted to determine the relationship of pigment indices (PSSRAa and PSSRb) in crops of soft winter wheat (variety Grom) and in the models “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI” on different agricultural backgrounds in the unstable moisture zone. The study showed that chlorophyll indices (PSSRAa and PSSRb) are high in the seedling phase and markedly high in the tillering phase in all agricultural backgrounds. The models “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI” showed high regression dependence of the variables in the seedling phase. Simultaneously, the model “PSSRAa, PSSRb – SIPI” is inversely proportional. During the tillering phase of “PSSRAa, PSSRb – VOG1” and “PSSRAa, PSSRb – SIPI,” the relationship between the variables decreased. However, the correlation in the “PSSRAa, PSSRb – SIPI” model improves, probably due to increased chlorophyll concentration (PSSRb). Consequently, the established relationship of the indices makes it possible to fix the vegetative phase of the development of winter wheat plants and display the state of the cultivated crop.
DOI: 10.6084/m9.figshare.22572841.v1
title: Metabolics Data

description: Raw metabolics data for walking inside on a treadmill and outside overground with robotic ankle exoskeletons.
DOI: 10.5281/zenodo.7928532
title: SpliceAI_rocksdb_hg38_chr19

description: SpliceAI RocksDB for chromosome 19 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.5281/zenodo.7928531
title: SpliceAI_rocksdb_hg38_chr19

description: SpliceAI RocksDB for chromosome 19 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.5281/zenodo.7928518
title: SpliceAI_rocksdb_hg38_chr17

description: SpliceAI RocksDB for chromosome 17 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master
DOI: 10.5281/zenodo.7928517
title: SpliceAI_rocksdb_hg38_chr17

description: SpliceAI RocksDB for chromosome 17 of hg38 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master