cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/r8d-c3f-mhc
title: Veronica verna L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/cam-dde-xe5
title: Arenaria ciliata L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/cqn-lq7-80q
title: Tanacetum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/qwp-8w8-6xg
title: Erysimum chazarjurti N. Busch

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/858-bhz-5k6
title: Clypeola jonthlaspi L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/cxy-1a6-qm0
title: Pisum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/fnx-xen-vl2
title: Zygophyllum album L. f.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.v8bj9y
title: Occurrence Download

description: A dataset containing 930128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mollusca)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-7.5 52.5,0 52.5,0 60,-7.5 60,-7.5 52.5))"
 ]
}

 The dataset includes 930128 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032345-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jpz-47n-5sj
title: Arenaria L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/m14-66v-hfl
title: Adiantum capillus-veneris L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/s1f-ce9-esf
title: Cerastium glomeratum Thuill.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/hzx-tqj-0mb
title: Potentilla rupestris L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/n01-faj-fc7
title: Compositae Giseke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/w7l-2zy-167
title: Pimpinella L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3x9-b26-y4l
title: Viola pumila Chaix

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/cgn-3lx-lfg
title: Phlomis lychnitis L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/pc8-nnb-z8f
title: Silene ampullata Boiss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/bhz-3pt-zwc
title: Potentilla rupestris L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/jll-pvr-kdz
title: Limoniastrum guyonianum Durieu ex Boiss.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/wyk-q4r-26h
title: Cerastium tenoreanum Ser.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3gy-lbz-k23
title: Arthrocaulon macrostachyum (Moric.) Piirainen & G. Kadereit

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/fh5-r7v-6cj
title: Asarum europaeum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/nn5-fpz-6be
title: Spergularia marina (L.) Besser

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.mnfzvz
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pristimantis rhabdolaemus (Duellman, 1978)"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004039-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ss3eyt
title: Occurrence Download

description: A dataset containing 12337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Quercus L.",
 "Year 2010-2025"
 ]
}

 The dataset includes 12337 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014691-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ohpyc
title: Occurrence Download

description: A dataset containing 18681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "Year 2000-2019",
 "HasCoordinate is true",
 "TaxonKey is Coleoptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18681 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026250-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nr24tf
title: Occurrence Download

description: A dataset containing 56227 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranoaetus albicaudatus (Vieillot, 1816)"
 ]
}

 The dataset includes 56227 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055551-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9nfwx
title: Occurrence Download

description: A dataset containing 1301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acentrogobius pflaumii (Bleeker, 1853)"
 ]
}

 The dataset includes 1301 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079219-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgatwp
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectrohyla avia Stuart, 1952"
 ]
}

 The dataset's 1 records were derived from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054991-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hirwro
title: Occurrence Download

description: A dataset containing 518803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triticum aestivum L."
 ]
}

 The dataset includes 518803 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003000-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2y7kg
title: Occurrence Download

description: A dataset containing 8189 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Geometry POLYGON((-169.10156 70.14036,-168.39844 67.06743,-169.10156 59.17593,-173.32031 54.16243,-123.39844 17.97873,-77.69531 -28.92163,-87.77481 -60.35224,-36.68894 -56.97397,-37.61778 -39.24118,-30.1871 -17.37524,-37.61778 18.25951,-49.69262 45.41349,-36.91406 51.61802,-33.05072 65.16474,-9.87229 71.19014,-2.46094 83.59903,-66.44531 84.40594,-127.61719 81.09321,-149.41406 75.84517,-169.10156 70.14036))",
 "HasGeospatialIssue is false",
 "TaxonKey is Tecoma Juss.",
 "Year 1980-2021"
 ]
}

 The dataset includes 8189 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196240-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyc52y
title: Occurrence Download

description: A dataset containing 2088 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia pyriformis Cambess."
 ]
}

 The dataset includes 2088 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062749-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79uzxn
title: Occurrence Download

description: A dataset containing 1308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Year 1990-2020",
 "TaxonKey is Lepomis gibbosus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1308 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040511-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nnrui
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pisonia psammophila Mart. ex J.A.Schmidt"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013398-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k1hqok
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arrojadoa ×albiflora Buining & Brederoo"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002693-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb4e2m
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vangueria psammophila (K.Schum.) Lantz"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0412555-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emevyw
title: Occurrence Download

description: A dataset containing 1191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colophospermum mopane (J.Kirk ex Benth.) J.Léonard"
 ]
}

 The dataset includes 1191 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003371-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnwut9
title: Occurrence Download

description: A dataset containing 623129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitaceae"
 ]
}

 The dataset includes 623129 records from 1744 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0412703-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz8vc4
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Handroanthus abayoy, a new species of Bignoniaceae endemic from Bolivia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040089-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9mndc
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Paraguay, Brazil, Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Handroanthus albus (Cham.) Mattos"
 ]
}

 The dataset includes 238 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040090-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqewyc
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Handroanthus arianeae (A.H.Gentry) S.O.Grose"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040091-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z648y9
title: Occurrence Download

description: A dataset containing 118994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix purpurea L.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 118994 records from 774 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040087-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sd7ngj
title: Occurrence Download

description: A dataset containing 988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix ×holosericea Willd.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 988 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040092-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a22tfb
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix ×mollissima Hoffm.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 602 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040093-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8b3tg
title: Occurrence Download

description: A dataset containing 7257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix ×multinervis Döll)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 7257 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040094-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmbuhz
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix ×stipularis Sm.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 87 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040095-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9052492
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.fk5257
title: Occurrence Download

description: A dataset containing 8665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Meliolales"
 ]
}

 The dataset includes 8665 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040097-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13118796
title: SOSE output analyzed in "Evaluation of MITgcm-based ocean reanalysis for the Southern Ocean" (Part 2-3)

description: SOSE output analyzed in "Evaluation of MITgcm-based ocean reanalysis for the Southern Ocean" submitted to GMD. Complete theta data is 174GB. Thus, this dataset is separated into smaller files. These data can be accessed by accessing Zenode links (see below) or downloading from  http://sose.ucsd.edu/.
DOI: 10.5281/zenodo.13118797
title: SOSE output analyzed in "Evaluation of MITgcm-based ocean reanalysis for the Southern Ocean" (Part 2-3)

description: SOSE output analyzed in "Evaluation of MITgcm-based ocean reanalysis for the Southern Ocean" submitted to GMD. Complete theta data is 174GB. Thus, this dataset is separated into smaller files. These data can be accessed by accessing Zenode links (see below) or downloading from  http://sose.ucsd.edu/.
DOI: 10.5281/zenodo.13102579
title: DNA sampling in the Gulf of Mexico on GOMECC-4

description: Tourmaline files for processing of 16S (Bacteria and Archaea) and 18S (protists) DNA metabarcoding samples that were collected in the Gulf of Mexico as part of the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise. These files are associated with the following project: https://github.com/aomlomics/gomecc 

Tourmaline uses a Snakemake workflow and wraps programs like DADA2 and QIIME 2 to infer amplicon sequence variants (ASVs) and assigns taxonomy with common reference databases. All files from Tourmaline are included for 16S and 18S samples (separate folders). Taxonomic reference database files are also included for each marker region, which included SILVA (Version 138.1) and the Protistan Ribosomal Reference (PR2; Version 5.0.1) databases for 16S and 18S samples, respectively. 16S samples were sequenced on two different sequencing runs, and so, DADA2 in Tourmaline was performed separately on run 1 (plates 1-2) and 2 (plates 3-6) using the same parameters. With this approach, 16S ASV tables from separate runs were merged and assigned taxonomy on the combined table to avoid inflating the number of 16S ASVs. 

Folders with final Tourmaline output:



16S  - two Tourmaline runs for plates 1-2 and 3-6

18S  - single Tourmaline run


Folders with reference database files (e.g., raw files and classifiers)



16S taxonomy (16S-tax-files)

18S taxonomy (18S-tax-files)


Other files archived include a metadata table and markdown file describing the Tourmaline code used for bioinformatics. 

Raw FASTQ sequence data are available in NCBI SRA under BioProject ID PRJNA887898. FASTQ files included in the Tourmaline runs have been trimmed to remove primers. 

This work was funded in part through the NOAA Ocean Acidification Program (OAP) ROR #02bfn4816 under project numbers 21392 (Thompson) and 20708 (Barbero) and by awards NA16OAR4320199 and NA21OAR4320190 to the Northern Gulf Institute from NOAA’s Office of Oceanic and Atmospheric Research, U.S. Department of Commerce. This research was carried out in part under the auspices of the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) and NOAA, cooperative agreement NA20OAR4320472.
DOI: 10.5281/zenodo.13102580
title: DNA sampling in the Gulf of Mexico on GOMECC-4

description: Tourmaline files for processing of 16S (Bacteria and Archaea) and 18S (protists) DNA metabarcoding samples that were collected in the Gulf of Mexico as part of the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise. These files are associated with the following project: https://github.com/aomlomics/gomecc 

Tourmaline uses a Snakemake workflow and wraps programs like DADA2 and QIIME 2 to infer amplicon sequence variants (ASVs) and assigns taxonomy with common reference databases. All files from Tourmaline are included for 16S and 18S samples (separate folders). Taxonomic reference database files are also included for each marker region, which included SILVA (Version 138.1) and the Protistan Ribosomal Reference (PR2; Version 5.0.1) databases for 16S and 18S samples, respectively. 16S samples were sequenced on two different sequencing runs, and so, DADA2 in Tourmaline was performed separately on run 1 (plates 1-2) and 2 (plates 3-6) using the same parameters. With this approach, 16S ASV tables from separate runs were merged and assigned taxonomy on the combined table to avoid inflating the number of 16S ASVs. 

Folders with final Tourmaline output:



16S  - two Tourmaline runs for plates 1-2 and 3-6

18S  - single Tourmaline run


Folders with reference database files (e.g., raw files and classifiers)



16S taxonomy (16S-tax-files)

18S taxonomy (18S-tax-files)


Other files archived include a metadata table and markdown file describing the Tourmaline code used for bioinformatics. 

Raw FASTQ sequence data are available in NCBI SRA under BioProject ID PRJNA887898. FASTQ files included in the Tourmaline runs have been trimmed to remove primers. 

This work was funded in part through the NOAA Ocean Acidification Program (OAP) ROR #02bfn4816 under project numbers 21392 (Thompson) and 20708 (Barbero) and by awards NA16OAR4320199 and NA21OAR4320190 to the Northern Gulf Institute from NOAA’s Office of Oceanic and Atmospheric Research, U.S. Department of Commerce. This research was carried out in part under the auspices of the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) and NOAA, cooperative agreement NA20OAR4320472.
DOI: 10.15468/dl.dgzh8k
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Blommersia blommersae (Guibé, 1975)"
 ]
}

 The dataset includes 76 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040098-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.