cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13525247.v1
title: Additional file 5 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 5: Table S5. Significant taxonomic changes in water and host-microbial communities over time and between treatments. In the gut, the significant changes in the relative abundance between T0 and T1 were detected for Synergistetes in CC and Tenericutes in CC and CV. Later, between T1 and T3, the relative abundance of four phyla, Euryarchaeota, Firmicutes, Proteobacteria, and Tenericutes has significantly changed in all groups. In the skin, between T0 and T1, the significant changes were observed for Firmicutes and Fibrobacteres in the CV, and Bacteroidetes and Fusobacteria in CC and CV. However, between T1 and T3, the significant changes of relative abundance concerned Actinobacteria in CC and CV; Proteobacteria, Tenericutes, Bacteroidetes, and Firmicutes in all groups. In water, between T0 and T1, the significant changes were observed for Bacteroidetes in Control; Proteobacteria in the CV; Firmicutes and Tenericutes in all groups. However, between T1 and T3, the significant changes concerned Proteobacteria and Tenericutes in CV, and Firmicutes in all groups. This table only summarized significant taxa variation with multiple test corrections (Benjamini-Hochberg p-value BH
DOI: 10.6084/m9.figshare.13525235
title: Additional file 1 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 1: Table S1. ANOVA summary of metals concentrations in water tanks and Perca flavescens fish livers. Tukey and Wilcoxon’s tests showed that the Cadmium concentration in fish liver and water has significantly changed between treatments and Control; Constant Cadmium regime (CC), Variable Cadmium regime (CV), and Control (Control) and overtime. No significant changes were observed in Zinc and Cooper between treatments.
DOI: 10.6084/m9.figshare.13525244.v1
title: Additional file 4 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 4: Table S4. Summary of correlation network features in host and water microbial communities. The networks of gut microbial communities are composed of 30, 46, 65 of CC (connected components or hubs), respectively in Control, CV, and CC groups (see sheet 1). Therefore, the nodes number (NN) was lower in the Control group (ControlNN: 410) compared to Cd regimes networks (CVNN:488; CCNN:526). On the contrary, an average of neighbours (AN) was higher in the Control network (Control AN: 4) than in Cd groups networks (CVAN:2.98; CCAN:2.82). Skin microbial networks were composed of 47, 10, 3 of CC (connected components), respectively in Control, CV, and CC groups (see sheet 1). The number of CC was inversely proportional to nodes number, and low in Control group network (ControlNN: 651) in comparison with Cd networks (CV NN: 661; CC NN:759). Similarly, the average of neighbours (AN) was lower in the Control network (Control AN: 4) compared to Cd group networks (CVAN: 10.7; CCAN: 24.6). This high connectivity in CV and CC at T1 was proportional to the high percentage of strong negative correlations (R neg. Corr. &lt; − 0.6; B-H p-value
DOI: 10.6084/m9.figshare.13525253.v1
title: Additional file 6 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 6: Table S6. This table summarises the variation of the goodness of fit (R2) to the neutral model, the percentage of neutral and non-neutral OTUs through different abundance cut-offs in the different treatment groups of host and water microbial communities at times T1 and T3.
DOI: 10.6084/m9.figshare.13525235.v1
title: Additional file 1 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 1: Table S1. ANOVA summary of metals concentrations in water tanks and Perca flavescens fish livers. Tukey and Wilcoxon’s tests showed that the Cadmium concentration in fish liver and water has significantly changed between treatments and Control; Constant Cadmium regime (CC), Variable Cadmium regime (CV), and Control (Control) and overtime. No significant changes were observed in Zinc and Cooper between treatments.
DOI: 10.6084/m9.figshare.13525238
title: Additional file 2 of The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance

description: Additional file 2: Table S2. Statistical summary of alpha-diversity changes over time and treatments. Over time, the richness and evenness have significantly changed in treatments and Control for all types of communities. The significant changes of alpha-diversity between treatments and Control were statistically demonstrated (Table 2b) using rank statistics tests (Kruskal-Wallis/Wilcoxon). The same statistics were used to compare alpha-diversity overtime. Overall, the evenness in microbial skin communities has significantly diverged between treatments and Control at T1, and richness in Gut microbial communities at T3.
DOI: 10.6084/m9.figshare.13525287.v1
title: Additional file 5 of Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares

description: Additional file 5: Table S2. Relative abundance of phyla (mean) that were detected at various time points (fed, early withheld [EW], late withheld [LW], early refed [ER], and late refed [LR]) in both horses that received full access to feed (control) and horses that had feed withheld [WH].
DOI: 10.6084/m9.figshare.13524686.v1
title: 2019.rar

description: observation data of O3, NO2, CO, SO2 and PM in China in 2019 and 2020
DOI: 10.6084/m9.figshare.13525290
title: Additional file 6 of Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares

description: Additional file 6: Table S3. Relative abundance of genera (mean) that were detected at various time points (fed, early withheld [EW], late withheld [LW], early refed [ER], and late refed [LR]) in both horses that received full access to feed (control) and horses that had feed withheld [WH].
DOI: 10.6084/m9.figshare.13525290.v1
title: Additional file 6 of Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares

description: Additional file 6: Table S3. Relative abundance of genera (mean) that were detected at various time points (fed, early withheld [EW], late withheld [LW], early refed [ER], and late refed [LR]) in both horses that received full access to feed (control) and horses that had feed withheld [WH].
DOI: 10.6084/m9.figshare.13524686
title: 2019.rar

description: observation data of O3, NO2, CO, SO2 and PM in China in 2019 and 2020
DOI: 10.6084/m9.figshare.13525287
title: Additional file 5 of Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares

description: Additional file 5: Table S2. Relative abundance of phyla (mean) that were detected at various time points (fed, early withheld [EW], late withheld [LW], early refed [ER], and late refed [LR]) in both horses that received full access to feed (control) and horses that had feed withheld [WH].
DOI: 10.6084/m9.figshare.13524533.v2
title: FE1.bw

description: Proper development of the mammalian cerebral cortex relies on precise gene expression regulation, which is controlled by genetic, epigenetic and epitranscriptomic factors. Here we generate RNA demethylase <i>Fto </i>and methyltransferase <i>Mettl3 </i>cortical specific conditional knockout mice, and detect severe brain defects caused by <i>Mettl3 </i>deletion but not <i>Fto </i>knockout. Transcriptomic profiles using RNA sequencing (RNAseq) indicate that knockout of <i>Mettl3 </i>causes a more dramatic alteration on gene transcription than that of <i>Fto</i>. Interestingly, we conduct ribosome profiling sequencing (Ribo-Seq), and find that knockout of <i>Mettl3 </i>leads to a more severe disruption of translational regulation of mRNAs than deletion of <i>Fto</i>, results in altered translation of crucial genes in cortical radial glial cells and intermediate progenitors. Moreover, Mettl3 deletion causes elevated translation of a significant number of mRNAs, in particular major components in m6A methylation. Our findings indicate distinct functions of Mettl3 and Fto in brain development, and uncover a profound role of Mettl3 in regulating translation of major mRNAs that control proper cortical development <br>
DOI: 10.6084/m9.figshare.13525337.v1
title: mettl3_fto_emx1-cre_cortex_rna

description: Proper development of the mammalian cerebral cortex relies on precise gene expression regulation, which is controlled by genetic, epigenetic and epitranscriptomic factors. Here we generate RNA demethylase <i>Fto </i>and methyltransferase <i>Mettl3 </i>cortical specific conditional knockout mice, and detect severe brain defects caused by <i>Mettl3 </i>deletion but not <i>Fto </i>knockout. Transcriptomic profiles using RNA sequencing (RNAseq) indicate that knockout of <i>Mettl3 </i>causes a more dramatic alteration on gene transcription than that of <i>Fto</i>. Interestingly, we conduct ribosome profiling sequencing (Ribo-Seq), and find that knockout of <i>Mettl3 </i>leads to a more severe disruption of translational regulation of mRNAs than deletion of <i>Fto</i>, results in altered translation of crucial genes in cortical radial glial cells and intermediate progenitors. Moreover, Mettl3 deletion causes elevated translation of a significant number of mRNAs, in particular major components in m6A methylation. Our findings indicate distinct functions of Mettl3 and Fto in brain development, and uncover a profound role of Mettl3 in regulating translation of major mRNAs that control proper cortical development <br>
DOI: 10.6084/m9.figshare.13525337
title: mettl3_fto_emx1-cre_cortex_rna

description: Proper development of the mammalian cerebral cortex relies on precise gene expression regulation, which is controlled by genetic, epigenetic and epitranscriptomic factors. Here we generate RNA demethylase <i>Fto </i>and methyltransferase <i>Mettl3 </i>cortical specific conditional knockout mice, and detect severe brain defects caused by <i>Mettl3 </i>deletion but not <i>Fto </i>knockout. Transcriptomic profiles using RNA sequencing (RNAseq) indicate that knockout of <i>Mettl3 </i>causes a more dramatic alteration on gene transcription than that of <i>Fto</i>. Interestingly, we conduct ribosome profiling sequencing (Ribo-Seq), and find that knockout of <i>Mettl3 </i>leads to a more severe disruption of translational regulation of mRNAs than deletion of <i>Fto</i>, results in altered translation of crucial genes in cortical radial glial cells and intermediate progenitors. Moreover, Mettl3 deletion causes elevated translation of a significant number of mRNAs, in particular major components in m6A methylation. Our findings indicate distinct functions of Mettl3 and Fto in brain development, and uncover a profound role of Mettl3 in regulating translation of major mRNAs that control proper cortical development <br>
DOI: 10.6084/m9.figshare.13525346
title: The complete mitochondrial genome of an endangered triton snail Charonia lampas (Littorinimorpha: Charoniidae) from South Korea

description: Supplementary Table 1. Sequences of primers used to amplify PCR fragments from <i>Charonia lampas</i>.The complete mitochondrial genome was amplified in five PCR fragments using specific primers based on other related littorinimorph species.
DOI: 10.6084/m9.figshare.13525346.v1
title: The complete mitochondrial genome of an endangered triton snail Charonia lampas (Littorinimorpha: Charoniidae) from South Korea

description: Supplementary Table 1. Sequences of primers used to amplify PCR fragments from <i>Charonia lampas</i>.The complete mitochondrial genome was amplified in five PCR fragments using specific primers based on other related littorinimorph species.
DOI: 10.21227/9yx1-mn03
title: Coronavirus (COVID-19) Geo-tagged Tweets Dataset

description: This dataset contains IDs and sentiment scores of the geo-tagged tweets related to the COVID-19 pandemic. The tweets are captured by an on-going project deployed at https://live.rlamsal.com.np. The model monitors the real-time Twitter feed for coronavirus-related tweets using 90+ different keywords and hashtags that are commonly used while referencing the pandemic. Complying with Twitter's content redistribution policy, only the tweet IDs are shared. You can re-construct the dataset by hydrating these IDs. The tweet IDs in this dataset belong to the tweets tweeted providing an exact location.The paper associated with this dataset is available here: Design and analysis of a large-scale COVID-19 tweets dataset-------------------------------------Related datasets: (a) Coronavirus (COVID-19) Tweets Sentiment Trend (Global)(b) Tweets Originating from India During COVID-19 Lockdowns-------------------------------------Below is the quick overview of this dataset.— Dataset name: GeoCOV19Tweets Dataset— Number of tweets : 293,245 tweets— Coverage : Global— Language : English (EN)— Dataset usage terms : By using this dataset, you agree to (i) use the content of this dataset and the data generated from the content of this dataset for non-commercial research only, (ii) remain in compliance with Twitter's Developer Policy and (iii) cite the following paper:Lamsal, R. Design and analysis of a large-scale COVID-19 tweets dataset. Applied Intelligence (2020). https://doi.org/10.1007/s10489-020-02029-z— Primary dataset : Coronavirus (COVID-19) Tweets Dataset (COV19Tweets Dataset)— Dataset updates : Everyday— Active keywords and hashtags: keywords.tsvPlease visit this page (primary dataset) for details regarding the collection date and time (and other notes) of each CSV file present in this dataset.
DOI: 10.6084/m9.figshare.12364067.v2
title: Map of the terrestrial ecosystems of Myanmar, Version 1.0

description: This map of the terrestrial ecosystems of Myanmar was developed using a supervised learning approach to classify earth observation data and other geospatial datasets into broad mappable units, which was then split into the ecosystem types defined by the IUCN Red List of Ecosystems of Myanmar project.The shapefile presents the hierarchical ecosystem typology for Myanmar, including attributes that indicate ecosystems grouped at the Biome (11 classes), Functional Ecotype (21 classes) and Ecosystem Type (64 classes) level of the Myanmar ecosystem typology.<br> For further information refer to the users guide, and the report:<br> Murray, N.J., Keith, D.A., Tizard, R., Duncan, A., Htut, W.T., Hlaing, N., Oo, A.H., Ya, K.Z., Grantham, H. (2020) <i>Threatened Ecosystems of Myanmar. An IUCN Red List of Ecosystems Assessment. Version 1.0.</i> Wildlife Conservation Society. ISBN: 978-0-9903852-5-7. <br>
DOI: 10.6084/m9.figshare.13525376.v1
title: Supplementary table 1

description: <b>Supplementary Table 1.</b> MicroRNA panel (n=176) used in the study in the 48 women undergoing in vitro fertilisation.
DOI: 10.6084/m9.figshare.13525376
title: Supplementary table 1

description: <b>Supplementary Table 1.</b> MicroRNA panel (n=176) used in the study in the 48 women undergoing in vitro fertilisation.
DOI: 10.5281/zenodo.4420759
title: Acoustic transfer function data for source and sensor placement

description: Acoustic transfer function (ATF) data for the codes of source and sensor placement in sound field control. https://github.com/sh01k/SourceSensorPlacementSFC The ATF data in the 2D acoustic field was generated by the finite element method using FreeFem++ (https://freefem.org/).
description: {"references": ["S. Koyama, G. Chardon, and L. Daudet, \"Optimizing Source and Sensor Placement for Sound Field Control: An Overview,\" IEEE/ACM Transactions on Audio, Speech, and Language Processing, DOI: 10.1109/TASLP.2020.2964958, 2020."]}
DOI: 10.5281/zenodo.4420758
title: Acoustic transfer function data for source and sensor placement

description: Acoustic transfer function (ATF) data for the codes of source and sensor placement in sound field control. https://github.com/sh01k/SourceSensorPlacementSFC The ATF data in the 2D acoustic field was generated by the finite element method using FreeFem++ (https://freefem.org/).
description: {"references": ["S. Koyama, G. Chardon, and L. Daudet, \"Optimizing Source and Sensor Placement for Sound Field Control: An Overview,\" IEEE/ACM Transactions on Audio, Speech, and Language Processing, DOI: 10.1109/TASLP.2020.2964958, 2020."]}
DOI: 10.6084/m9.figshare.13525379.v1
title: Data on effect of TH on VEGF-induced angiogenesis

description: Effect of TH on VEGF-induced cell proliferation, migration, tube formation, MMP-2 production and VEGF level.
DOI: 10.6084/m9.figshare.13525379
title: Data on effect of TH on VEGF-induced angiogenesis

description: Effect of TH on VEGF-induced cell proliferation, migration, tube formation, MMP-2 production and VEGF level.
DOI: 10.6084/m9.figshare.13525388
title: Mass spectrometry data

description: Mass spectrometry data for "Enzymatic characterization and coenzyme specificity conversion of malate dehydrogenase from <i>Bacillus subtilis</i>".<br>
DOI: 10.5281/zenodo.4420792
title: YaaraE/Interbrain-synchrony-Chemosignaling: version1

description: No description provided.
DOI: 10.5281/zenodo.4420791
title: YaaraE/Interbrain-synchrony-Chemosignaling: version1

description: No description provided.
DOI: 10.6084/m9.figshare.7423589
title: Cubic plasma membrane domains stabilize and restrict zones for pH band formation in <i>Chara</i> internodal cells

description: Characean internodal cells display acid and alkaline regions along their surface when exposed to light. The acidification facilitates uptake of carbon required for photosynthesis. In the genus <i>Chara</i>, cubic plasma membrane domains, known as charasomes, were first described five decades ago. Their size and abundance varies along the cell surface and it has been conjectured that the charasome coverage correlates with the pH banding pattern. In this study, we used fluorescein isothiocyanate-dextran (FITC-dextran) and confocal laser scanning microscopy to map the pH profile at high spatial and temporal resolution. In parallel, we stained the charasomes with styryl dyes and investigated their distribution in relation to the fluorescence pattern of FITC-dextran. In both internodal cells of the branchlets and of the main axis, we found that charasomes were small and sparse at the alkaline bands but large and abundant at the acidic regions. Our findings confirm the existence of cell surface regions predisposed to generate either high or low pH zones. We provide evidence that areas with high charasome abundance stabilize and restrict the position of the acidic bands whereas regions with low charasome abundance allow the formation of either stable or unstable alkaline bands.
DOI: 10.6084/m9.figshare.7423589.v1
title: Cubic plasma membrane domains stabilize and restrict zones for pH band formation in <i>Chara</i> internodal cells

description: Characean internodal cells display acid and alkaline regions along their surface when exposed to light. The acidification facilitates uptake of carbon required for photosynthesis. In the genus <i>Chara</i>, cubic plasma membrane domains, known as charasomes, were first described five decades ago. Their size and abundance varies along the cell surface and it has been conjectured that the charasome coverage correlates with the pH banding pattern. In this study, we used fluorescein isothiocyanate-dextran (FITC-dextran) and confocal laser scanning microscopy to map the pH profile at high spatial and temporal resolution. In parallel, we stained the charasomes with styryl dyes and investigated their distribution in relation to the fluorescence pattern of FITC-dextran. In both internodal cells of the branchlets and of the main axis, we found that charasomes were small and sparse at the alkaline bands but large and abundant at the acidic regions. Our findings confirm the existence of cell surface regions predisposed to generate either high or low pH zones. We provide evidence that areas with high charasome abundance stabilize and restrict the position of the acidic bands whereas regions with low charasome abundance allow the formation of either stable or unstable alkaline bands.
DOI: 10.6084/m9.figshare.9879242
title: Plastid phylogeography of <i>Delphinium fissum</i> subsp. sordidum and the series <i>Fissa</i> (Ranunculaceae) in the Iberian Peninsula: implications for conservation

description: We study the phylogeography of the series <i>Fissa</i> species in the Iberian Peninsula. This group constitutes a complex formed by three Iberian endemic and threatened taxa with restricted distribution ranges and relatively small population sizes. We amplify and sequence two plastid regions, <i>trn</i>S-<i>trn</i>G and <i>psb</i>A-<i>trn</i>H from 15 sampling locations (n = 45). A total of 15 haplotypes are detected. The median-joining phylogenetic network shows two main haplotype lineages: one western corresponding to the western taxon, <i>D. fissum</i> subsp. <i>sordidum</i>, and the other eastern corresponding to eastern taxa <i>D. bolosii</i> and <i>D. mansanetianum</i>. AMOVA analysis with 94.32% of the total variation and SAMOVA analysis with a Fct value of 0.943 support the presence of these well-defined lineages. We report high values of total gene diversity (h<sub>T</sub> = 0.959). Haplotype diversity within populations is low (h<sub>S</sub> = 0.311). On the contrary, differentiation among populations (G<sub>ST</sub> = 0.675) and Fixation Index (F<sub>ST</sub> = 0.989) are high. These values mean that gene flow among populations is limited. Estimation of divergence times shows that the split between <i>D. fissum</i> subsp. <i>sordidum</i> and the two other taxa (<i>D. bolosii</i> and <i>D. mansanetianum</i>) took place during the transition between Pliocene and Pleistocene (approximately 2.67 Ma). Negative Tajima’s D-values test (Tajima’s D = -0.108, P ≥ 0.1) and unimodal mismatch distribution suggest expansion range for <i>D. fissum</i> subsp. <i>sordidum</i>. We advocate to draw up recovery plans for series <i>Fissa</i> species in the Iberian Peninsula, especially for <i>D. fissum</i> subsp. <i>sordidum</i>.