cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tkxefm
title: Occurrence Download

description: A dataset containing 4334 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Year 2000-2025",
 "HasCoordinate is one of (true)",
 "HasGeospatialIssue is one of (false)",
 "TaxonKey is one of (Eira C.E.H.Smith, 1842)"
 ]
 }
 ]
}

 The dataset includes 4334 records from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009011-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14994173
title: spratelloides_delicatulus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14994174
title: spratelloides_delicatulus_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.nasprw
title: Occurrence Download

description: A dataset containing 18596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.75284 5.77128,-75.75258 5.77098,-75.74485 5.7386,-75.6949 5.73364,-75.63503 5.7713,-75.67689 5.80934,-75.70703 5.82354,-75.75445 5.79651,-75.75284 5.77128))",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 18596 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009085-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxsyjj
title: Occurrence Download

description: A dataset containing 2795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urophora stylata (Fabricius, 1775)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2795 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009086-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14994177
title: stictonetta_naevosa_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14994178
title: stictonetta_naevosa_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.awv5ue
title: Occurrence Download

description: A dataset containing 243326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Verbascum thapsus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 243326 records from 1828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009082-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18204983
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS260110g Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS260110g Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15156/bio/sh1063794.10fu
title: SH1063794.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.nrvapr
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Biodiversidad íctica de Providencia durante la Expedición Seaflower 2019 - Proyecto Colombia BIO"
 ]
}

 The dataset includes 242 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111071-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbyadg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia cyanescens Sands"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052547-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk3nuq
title: Occurrence Download

description: A dataset containing 4335373 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 4335373 records from 1194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010458-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.948cgb
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Helminthotheca echioides (L) Holub"
 ]
}

 The dataset includes 541 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347685-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drxmgz
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Jubula lettii (Büttikofer, 1889)"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052546-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwklyr
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pinus oaxacana Mirov"
 ]
}

 The dataset includes 92 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010476-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqm74v
title: Occurrence Download

description: A dataset containing 95101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heracleum mantegazzianum Sommier & Levier"
 ]
}

 The dataset includes 95101 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111073-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebq4vz
title: Occurrence Download

description: A dataset containing 4783 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Grus vipio Pallas, 1811"
 ]
}

 The dataset includes 4783 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001338-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gq2mou
title: Occurrence Download

description: A dataset containing 796275 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhamnaceae"
 ]
}

 The dataset includes 796275 records from 1374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003253-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q77azd
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Ovulidae"
 ]
}

 The dataset includes 14 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000731-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyntzs
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Malus ×floribunda Siebold ex Van Houtte)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 160 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000777-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.532yvd
title: Occurrence Download

description: A dataset containing 722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spermacoce alata Aubl.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 722 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000732-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74vhsz
title: Occurrence Download

description: A dataset containing 2010 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence)",
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dichanthium annulatum (Forssk.) Stapf"
 ]
}

 The dataset includes 2010 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000733-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kqjys
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Malus prunifolia (Willd.) Borkh.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 292 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000734-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1126729
title: Data from a Trial Trenching at Culworth Road Chipping Warden, Northamptonshire, 2020 (HS2 Phase One)

description: This collection comprises of images, report, CAD, spreadsheet, site record and harris matrix data from trial trenching at Culworth Road Chipping Warden, Northamptonshire, 2020. A trial trench evaluation comprising 42 trenches wad undertaken at Culworth Road, as part of ongoing works in advance of HS2. Trenching revealed low levels of activity in the Neolithic to Bronze Age. Activity in the Iron Age and Roman periods was probably peripherally associated with settlements to the south.This archive can be used independently and/or in in conjunction with the rest of HS2 datasets in order to inform the archaeological features and periods unearthed on this route as interpretations of landscape archaeology. This can also function as a guide to digital archiving for future infrastructure projects benefiting both the commercial sector and the research community.
DOI: 10.15468/dl.hdyp3c
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Antirrhinum rothmaleri (P.Silva) Amich",
 "Year 1975-2025"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000778-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7dfwf
title: Occurrence Download

description: A dataset containing 5710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphorbia hypericifolia L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5710 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000735-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28124108
title: Chapter 3 - Experimental Results - data

description: In the present chapter, we aimed to explore the cellular morphology and the factors driving adaptation to the new metabolic environment, particularly given the increased levels of H<sub>2</sub>DCF reactive species observed in glucose-free medium in Chapter 2.Our findings demonstrate the complex interplay between metabolic context, cellular morphology, and oxidative stress in NHDF cells. The shift from glycolysis to OXPHOS, driven by changes in glucose availability, led to significant alterations in cell metabolism, growth, and morphology. We can also conclude that larger cells significantly affect the outcomes of many experimental assays, highlighting the need for precise normalization. Given the phenotypic changes that occur under varying metabolic conditions, experimental results should be normalized by the number of nuclei rather than cell mass. This approach ensures that observed cellular responses are not skewed by differences in cell size, leading to more accurate and reliable data interpretation. Furthermore, the inhibition of mitochondrial stimulation by an antioxidant highlights the potential for oxidative stress to act as a signaling mechanism in metabolic adaptation. These insights contribute to our understanding of how cells respond to metabolic challenges and may inform strategies for modulating cellular metabolism in therapeutic contexts.<br>
DOI: 10.6084/m9.figshare.28124108.v1
title: Chapter 3 - Experimental Results - data

description: In the present chapter, we aimed to explore the cellular morphology and the factors driving adaptation to the new metabolic environment, particularly given the increased levels of H<sub>2</sub>DCF reactive species observed in glucose-free medium in Chapter 2.Our findings demonstrate the complex interplay between metabolic context, cellular morphology, and oxidative stress in NHDF cells. The shift from glycolysis to OXPHOS, driven by changes in glucose availability, led to significant alterations in cell metabolism, growth, and morphology. We can also conclude that larger cells significantly affect the outcomes of many experimental assays, highlighting the need for precise normalization. Given the phenotypic changes that occur under varying metabolic conditions, experimental results should be normalized by the number of nuclei rather than cell mass. This approach ensures that observed cellular responses are not skewed by differences in cell size, leading to more accurate and reliable data interpretation. Furthermore, the inhibition of mitochondrial stimulation by an antioxidant highlights the potential for oxidative stress to act as a signaling mechanism in metabolic adaptation. These insights contribute to our understanding of how cells respond to metabolic challenges and may inform strategies for modulating cellular metabolism in therapeutic contexts.<br>
DOI: 10.6084/m9.figshare.28124102
title: Chapter 2 - Experimental Results - data.

description: Cell culture conditions highly influence cell metabolism in vitro. This is relevant for preclinical assays, for which fibroblasts are an interesting cell model, with applications in regenerative medicine, diagnostics and therapeutic development for personalized medicine, and the validation of ingredients for cosmetics. Given these cells’ short lifespan in culture, we aimed to identify the best cell culture conditions and promising markers to study mitochondrial health and stress in normal human dermal fibroblasts (NHDF). We tested the effect of reducing glucose concentration in the cell medium from high glucose (HGm) to a more physiological level [low glucose medium (LGm)], or its complete removal and replacement by galactose [medium that forces oxidative phosphorylation (OXPHOSm)], always in the presence of glutamine and pyruvate. We have demonstrated that only with OXPHOSm was it possible to observe the selective inhibition of mitochondrial adenosine triphosphate (ATP) production. This reliance on mitochondrial ATP was accompanied by changes in oxygen consumption rate and extracellular acidification rate, oxidation of citric acid cycle substrates, fatty acids, lactate, and other substrates, increased mitochondrial network extension and polarization, the increased protein content of voltage-dependent anion channel (VDAC) and peroxisome proliferator-activated receptor gamma coactivator 1-alpha and changes in several key transcripts related to energy metabolism. LGm did not promote significant metabolic changes in NHDF, although mitochondrial network extension and VDAC protein content were increased compared to HGmcultured cells. Our results indicate that short-term adaptation to OXPHOSm is ideal for studying mitochondrial health and stress in NHDF.
DOI: 10.6084/m9.figshare.28124102.v1
title: Chapter 2 - Experimental Results - data.

description: Cell culture conditions highly influence cell metabolism in vitro. This is relevant for preclinical assays, for which fibroblasts are an interesting cell model, with applications in regenerative medicine, diagnostics and therapeutic development for personalized medicine, and the validation of ingredients for cosmetics. Given these cells’ short lifespan in culture, we aimed to identify the best cell culture conditions and promising markers to study mitochondrial health and stress in normal human dermal fibroblasts (NHDF). We tested the effect of reducing glucose concentration in the cell medium from high glucose (HGm) to a more physiological level [low glucose medium (LGm)], or its complete removal and replacement by galactose [medium that forces oxidative phosphorylation (OXPHOSm)], always in the presence of glutamine and pyruvate. We have demonstrated that only with OXPHOSm was it possible to observe the selective inhibition of mitochondrial adenosine triphosphate (ATP) production. This reliance on mitochondrial ATP was accompanied by changes in oxygen consumption rate and extracellular acidification rate, oxidation of citric acid cycle substrates, fatty acids, lactate, and other substrates, increased mitochondrial network extension and polarization, the increased protein content of voltage-dependent anion channel (VDAC) and peroxisome proliferator-activated receptor gamma coactivator 1-alpha and changes in several key transcripts related to energy metabolism. LGm did not promote significant metabolic changes in NHDF, although mitochondrial network extension and VDAC protein content were increased compared to HGmcultured cells. Our results indicate that short-term adaptation to OXPHOSm is ideal for studying mitochondrial health and stress in NHDF.
DOI: 10.6084/m9.figshare.28100339
title: Chapter 4 - Experimental Results - data.

description: Aging and lifestyle-related diseases, such as cardiovascular diseases, diabetes, cancer, and neurodegenerative disorders, are major global health challenges. These conditions are often linked to redox imbalances, where cells fail to regulate reactive redox species (RRS), leading to oxidative stress and cellular damage. Although antioxidants are known to neutralize harmful RRS, their clinical efficacy remains inconsistent. One reason for this inconsistency is the inadequacy of current in vitro models to accurately mimic in vivo redox conditions. This study addresses the gap in understanding the heterogeneity of redox responses in cells by using metabolically primed human dermal fibroblasts (NHDF), a model relevant for precision mitochondrial medicine. We investigated how metabolic priming, which enhances mitochondrial bioenergetics, influences redox responses to oxidative stress induced by hydrogen peroxide (H2O2) and tert-butyl hydroperoxide (tBHP). Specifically, we explored the impact of cell population density and cell cycle distribution on redox dynamics. Our findings indicate that NHDF cells cultured in oxidative phosphorylation-promoting medium (OXm) exhibit significantly larger variability in oxidative stress responses. This variability suggests that enhanced mitochondrial bioenergetics necessitates a constant regulation of the cellular redox machinery, potentially leading to heterogeneous responses. Additionally, cells grown in OXm showed increased mitochondrial polarization and a lower percentage of cells in the G2/M phase, contributing to the observed heterogeneity. Key factors influencing this variability included cell population density at the time of oxidant exposure and fluctuations in cell cycle distribution. Our results highlight the necessity of employing multiple oxidants in metabolic priming models to achieve a comprehensive understanding of oxidative stress responses and redox regulation mechanisms. Furthermore, the study emphasizes the need to refine in vitro models to better reflect in vivo conditions, which is crucial for the development of effective redox-based therapeutic strategies.
DOI: 10.15468/dl.v5krxk
title: Occurrence Download

description: A dataset containing 9252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Waltheria indica L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9252 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000779-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/hgpph1
title: T0 HDF opendata.xlsx

description: Données brutes (T0)
DOI: 10.57745/isjomn
title: Rapport final PE3S (Fondation) 2025.pdf

description: :unav