cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8427608.v1
title: Resource allocation to growth or luxury consumption drives mycorrhizal responses

description: Growth and functional trait data for Brachypodium distachyon grown under variable nitrogen and phosphorus supply rates and in the presence or absence of arbuscular mycorrhizal (AM) fungi.<br>ID.Tag = unique plant identifierGenotype = Genotype of B. distachyonSalt = Salinity treatment (not manipulated here)Nutrient = Nutrient addition treatmentMycorrhizal = AM fungi added or notlane, position = pot location in glasshousePSA.fd = projected shoot area on final day (in pixels)<br>HA.fd = hue angle on final dayAGRmax = maximum absolute growth rate (pixels/day)<br>Dry.Shoot.Weights = dry mass of shoot (g)Dry.Root.Weights = dry mass of root (g)Fresh.Shoot.Weights = mass of shoot before drying (g)P.concentration = tissue phosphorus concentration (mg/g)<br>N.concentration = tissue nitrogen concentration (mg/g)<br>C.concentration = tissue carbon concentration (mg/g)Tissue.C.N.ratio = mass ratio of C to N in tissueTissue.N.P.ratio = mass ratio of N to P in tissueSupply.NP.ratio = mass ratio of available N to available P in soil <br>SAMR = shoot area to mass ratio (pixels/g)<br>Total.Shoot.P = total mass of phosphorus in tissue (mg)<br>Total.Shoot.N = total mass of nitrogen in tissue (mg)RMF = root mass fraction<br>percent.colonisation = <br>PC1 = ordination of plant functional traits, loadings on first axis<br>PC2 = ordination of plant functional traits, loadings on second axis<br>PC1.response = ordination of plant functional traits excluding N and P concentrations, loadings on first axis<br>MGR = mycorrhizal growth response calculated from PSA on final day<br><br>For more details, see publication (<i>to be included</i>).<br><br>
DOI: 10.6084/m9.figshare.8427512
title: Is repairing speech errors an automatic or a controlled process? Insights from the relationship between error and repair probabilities in English and Spanish

description: Speakers can correct their speech errors, but the mechanisms behind repairs are still unclear. Some findings, such as the speed of repairs and speakers’ occasional unawareness of them, point to an automatic repair process. This paper reports a finding that challenges a purely automatic repair process. Specifically, we show that as error rate increases, so does the proportion of repairs. Twenty highly-proficient English-Spanish bilinguals described dynamic visual events in real time (e.g. “The blue bottle disappears behind the brown curtain”) in English and Spanish blocks. Both error rates and proportion of corrected errors were higher on (a) noun phrase (NP)2 vs. NP1, and (b) word1 (adjective in English and noun in Spanish) vs. word2 within the NP. These results show a consistent relationship between error and repair probabilities, disentangled from position, compatible with a model in which greater control is recruited in error-prone situations to enhance the effectiveness of repair.
DOI: 10.6084/m9.figshare.8427512.v2
title: Is repairing speech errors an automatic or a controlled process? Insights from the relationship between error and repair probabilities in English and Spanish

description: Speakers can correct their speech errors, but the mechanisms behind repairs are still unclear. Some findings, such as the speed of repairs and speakers’ occasional unawareness of them, point to an automatic repair process. This paper reports a finding that challenges a purely automatic repair process. Specifically, we show that as error rate increases, so does the proportion of repairs. Twenty highly-proficient English-Spanish bilinguals described dynamic visual events in real time (e.g. “The blue bottle disappears behind the brown curtain”) in English and Spanish blocks. Both error rates and proportion of corrected errors were higher on (a) noun phrase (NP)2 vs. NP1, and (b) word1 (adjective in English and noun in Spanish) vs. word2 within the NP. These results show a consistent relationship between error and repair probabilities, disentangled from position, compatible with a model in which greater control is recruited in error-prone situations to enhance the effectiveness of repair.
DOI: 10.6084/m9.figshare.8427512.v1
title: Is repairing speech errors an automatic or a controlled process? Insights from the relationship between error and repair probabilities in English and Spanish

description: Speakers can correct their speech errors, but the mechanisms behind repairs are still unclear. Some findings, such as the speed of repairs and speakers’ occasional unawareness of them, point to an automatic repair process. This paper reports a finding that challenges a purely automatic repair process. Specifically, we show that as error rate increases, so does the proportion of repairs. Twenty highly-proficient English-Spanish bilinguals described dynamic visual events in real time (e.g. “The blue bottle disappears behind the brown curtain”) in English and Spanish blocks. Both error rates and proportion of corrected errors were higher on (a) noun phrase (NP)2 vs. NP1, and (b) word1 (adjective in English and noun in Spanish) vs. word2 within the NP. These results show a consistent relationship between error and repair probabilities, disentangled from position, compatible with a model in which greater control is recruited in error-prone situations to enhance the effectiveness of repair.
DOI: 10.6084/m9.figshare.8427359
title: Supplement D - Data from Is implicit Theory of Mind real but hard to detect? Testing adults with different stimulus materials

description: All datasets
DOI: 10.6084/m9.figshare.8427359.v1
title: Supplement D - Data from Is implicit Theory of Mind real but hard to detect? Testing adults with different stimulus materials

description: All datasets
DOI: 10.6084/m9.figshare.8427362
title: Supplementary material.docx

description: Experimental.Plant materials and phytopharmaceutical productChemicals and apparatusPreparation of Standards and samplesInstrumentation and Chromatographic conditionsFiguresOptimisation of chromatographic conditions<b>S1:</b>Effect of organic solvent type in the mobile phase on separation <b>S2:</b>Effect of initial and final concentration of ACN in the mobile phase on separation <b>S3:</b>Effect of gradient time on separation <b>S4:</b>Effect of column temperature on separation <b>S5:</b>Effect of flow rate on corrected peak area <b>S6:</b>Peak characterization in the crude extracts Indirect-dispersive liquid-liquid microextraction<br><b> S7: </b>Effect of IDLLME on the baseline, (a) before (b) after IDLLME, Peaks: 1, vitexin 2''-O-rhamnoside, 2, rutin, 3, vitexin, and 4, hyperoside.<br>Tables<b>S1:</b>Optimum chromatographic conditions Determination of analytes in real samples <b>S2:</b>Concentration of analytes in the real samples <br>
DOI: 10.6084/m9.figshare.8427356
title: Supplement F - Videos Study 2 from Is implicit Theory of Mind real but hard to detect? Testing adults with different stimulus materials

description: Video Stimuli used in Study 2. Due to the size limit these could not be submitted vie the manuscript central system, but can be downloaded from the OSF: https://osf.io/2zp46/
DOI: 10.6084/m9.figshare.8427356.v1
title: Supplement F - Videos Study 2 from Is implicit Theory of Mind real but hard to detect? Testing adults with different stimulus materials

description: Video Stimuli used in Study 2. Due to the size limit these could not be submitted vie the manuscript central system, but can be downloaded from the OSF: https://osf.io/2zp46/
DOI: 10.6084/m9.figshare.8427362.v1
title: Supplementary material.docx

description: Optimization of chromatographic conditionsEffect of organic solvent type in the mobile phase on separation Effect of initial and final concentration of ACN in the mobile phase on separation Effect of gradient time on separation Effect of column temperature on separation Effect of flow rate on corrected peak area Peak characterization in the crude extracts Optimum chromatographic conditions Determination of analytes in real samples Concentration of analytes in the real samples <br>
DOI: 10.6084/m9.figshare.8427362.v3
title: Supplementary material.docx

description: Experimental.Plant materials and phytopharmaceutical productChemicals and apparatusPreparation of Standards and samplesInstrumentation and Chromatographic conditionsFiguresOptimisation of chromatographic conditions<b>S1:</b>Effect of organic solvent type in the mobile phase on separation <b>S2:</b>Effect of initial and final concentration of ACN in the mobile phase on separation <b>S3:</b>Effect of gradient time on separation <b>S4:</b>Effect of column temperature on separation <b>S5:</b>Effect of flow rate on corrected peak area <b>S6:</b>Peak characterization in the crude extracts Indirect-dispersive liquid-liquid microextraction<br><b> S7: </b>Effect of IDLLME on the baseline, (a) before (b) after IDLLME, Peaks: 1, vitexin 2''-O-rhamnoside, 2, rutin, 3, vitexin, and 4, hyperoside.<br>Tables<b>S1:</b>Optimum chromatographic conditions Determination of analytes in real samples <b>S2:</b>Concentration of analytes in the real samples <br>
DOI: 10.6084/m9.figshare.8427362.v2
title: Supplementary material.docx

description: Experimental.Plant materials and phytopharmaceutical productChemicals and apparatusPreparation of Standards and samplesInstrumentation and Chromatographic conditionsFiguresOptimisation of chromatographic conditions<b>S1:</b>Effect of organic solvent type in the mobile phase on separation <b>S2:</b>Effect of initial and final concentration of ACN in the mobile phase on separation <b>S3:</b>Effect of gradient time on separation <b>S4:</b>Effect of column temperature on separation <b>S5:</b>Effect of flow rate on corrected peak area <b>S6:</b>Peak characterization in the crude extracts Tables<b>S1:</b>Optimum chromatographic conditions Determination of analytes in real samples <b>S2:</b>Concentration of analytes in the real samples <br>
DOI: 10.6084/m9.figshare.8427212
title: Spatial and life history data - Spatial scaling of population synchrony in marine fish depends on their life history

description: The data is divided three:<br>SpatialData.rda :<br>The Rdata file contains indices of density of several marine fish species across the Barents Sea, which were derived from data collected by the Norwegian Institute for Marine Research and the Polar Research Institute of Marine Fisheries and Oceanography from January to March, every year from 1985 to 2016.<br>The data is structured as following: "Data" is divided into each of the species .In order: North East Atlantic (NEA) cod (<i>Gadus morhua)</i>, NEA haddock (<i>Melanogramus aeglefinus)</i>, NEA saithe (<i>Pollachius virens)</i>, beaked redfish (<i>Sebastes mentella)</i>, golden redfish (<i>Sebastes marinus)</i>, blue whiting (<i>Micromesistius poutassou)</i>, Barents Sea capelin (<i>Mallotus villosus)</i> and Norwegian spring-spawning herring (<i>Clupea harengus</i>). "Data[[&lt;&gt;]]" is further divided into the ten resolution the density indices were grouped by. The resolution (i.e. size in km2 of each of the hexagonal cell of the grid used to spatially divide the Barents Sea), are given by the name of the sublist, namely 2500, 4900, 9100, 12100, 16900, 22500, 28900, 36100, 44100, 52900. Data[[&lt;&gt;]][[&lt;&gt;]] is divided into:"dmatrix" --&gt; a matrix with the densities of the given species of each cell and year."LLmat" --&gt; a matrix with coordinates of the centres of each of the cells. <br><br>For more details on the data sampling design see references linked______________________________________________<br>Dynlife2.Rdata : <br>This rdata file contains information on 5 life history variables for 9 species: The 9 spesies appear in the following order: cod, haddock, saithe, beaked redfish, golden redfish, Greenland halibut, blue withing, capelin, herring The 7 variables have the following order: E(M), Var (M), CV(R/S), CV(lambda), T, mean (R/S), mean (lambda).<br>The methodology used to calculate these variables can be found in Bjørkvoll <i>et al.</i> 2012<br>______________________________________________<br>Scaling_LifeHist.N.boot.r & Scaling_LifeHist.r.boot.r :<br><br>R scripts used to test the relationship between life history and spatial synchrony <br>
DOI: 10.21942/uva.8427191
title: RFID_raw_data_handheld

description: Two hundred ten (210) books (Lecture Notes on Mathematics, Springer) were randomly placed on a book shelf. The books had HF RFID tags. Forty (40) times the books were read by a RFID handheld reader (back and forth, two sweeps). The books were randomly replaced seven times (in total 8 configurations).
DOI: 10.21942/uva.8427191.v1
title: RFID_raw_data_handheld

description: Two hundred ten (210) books (Lecture Notes on Mathematics, Springer) were randomly placed on a book shelf. The books had HF RFID tags. Forty (40) times the books were read by a RFID handheld reader (back and forth, two sweeps). The books were randomly replaced seven times (in total 8 configurations).
DOI: 10.6084/m9.figshare.8427212.v1
title: Spatial data and life history

description: The data is divided three:<br>SpatialData.rda :<br>The Rdata file contains indices of density of several marine fish species across the Barents Sea, which were derived from data collected by the Norwegian Institute for Marine Research and the Polar Research Institute of Marine Fisheries and Oceanography from January to March, every year from 1985 to 2016.<br>The data is structured as following: "Data" is divided into each of the species .In order: North East Atlantic (NEA) cod (<i>Gadus morhua)</i>, NEA haddock (<i>Melanogramus aeglefinus)</i>, NEA saithe (<i>Pollachius virens)</i>, beaked redfish (<i>Sebastes mentella)</i>, golden redfish (<i>Sebastes marinus)</i>, blue whiting (<i>Micromesistius poutassou)</i>, Barents Sea capelin (<i>Mallotus villosus)</i> and Norwegian spring-spawning herring (<i>Clupea harengus</i>). "Data[[&lt;&gt;]]" is further divided into the ten resolution the density indices were grouped by. The resolution (i.e. size in km2 of each of the hexagonal cell of the grid used to spatially divide the Barents Sea), are given by the name of the sublist, namely 2500, 4900, 9100, 12100, 16900, 22500, 28900, 36100, 44100, 52900. Data[[&lt;&gt;]][[&lt;&gt;]] is divided into:"dmatrix" --&gt; a matrix with the densities of the given species of each cell and year."LLmat" --&gt; a matrix with coordinates of the centres of each of the cells. <br><br>For more details on the data sampling design see references linked______________________________________________<br>Dynlife2.Rdata : <br>This rdata file contains information on 5 life history variables for 9 species: The 9 spesies appear in the following order: cod, haddock, saithe, beaked redfish, golden redfish, Greenland halibut, blue withing, capelin, herring The 7 variables have the following order: E(M), Var (M), CV(R/S), CV(lambda), T, mean (R/S), mean (lambda).<br>The methodology used to calculate these variables can be found in Bjørkvoll <i>et al.</i> 2012<br>______________________________________________<br>Scaling_LifeHist.N.boot.r & Scaling_LifeHist.r.boot.r :<br><br>R scripts used to test the relationship between life history and spatial synchrony <br>
DOI: 10.6084/m9.figshare.8427131
title: The effects of female descriptive representation and quotas on public governance outcome

description: The growth of female representation in politics has been enabled by increased employment of seat quotas in national parliaments around the world, visibility and influence of women is the highest ever in the modern era. This, in and of itself, is a indicator of success, however a probe beyond the headcount analysis offered by the descriptive representation construct quizzed whether women representation enabled by quotas contribute to better or more effective governance outcomes and its relational effect on female participation in the civil service. The findings suggest that female participation in politics and the civil service is positively associated with government effectiveness and positively impacts the proportion of women taking up positions in the civil service. Quotas impact governance outcome negatively and the proportion of seats held by women displays evidence of diminishing returns to governance outcomes suggesting there can be quota satiation. <br>
DOI: 10.6084/m9.figshare.8427128
title: Supplementary Material for: Hypercalcemia Is a Risk Factor for the Progression of Aortic Calcification in Kidney Transplant Recipients

description: <b><i>Background/Aims:</i></b> Vascular calcification is common and progressive in chronic kidney disease, including kidney transplant recipients (KTRs). However, the risk factors associated with the progression of aortic calcification (AoC) in KTRs have not been fully elucidated. In the present study, we evaluated AoC and examined the factors associated with its advancement in KTRs. <b><i>Materials:</i></b> This was a prospective longitudinal study that included 98 KTRs. We quantitatively investigated infrarenal abdominal AoC using the Agatston score, as measured by multi-slice computed tomography. After the baseline investigation, a follow-up scan was performed after 3 years, and the Agatston scores were obtained again. The changes in laboratory data affecting the 2nd Agatston scores were examined by multivariable analysis using non-linear regression after adjustment for several confounders. <b><i>Results:</i></b> The 2nd Agatston scores were significantly greater than the baseline Agatston scores (<i>p</i> &lt; 0.001). After adjustment for the confounders, the change in corrected serum calcium exhibited a significant non-linear correlation with the 2nd Agatston scores (<i>p</i> = 0.022 for non-linearity/<i>p</i> = 0.031 for the effect of corrected serum calcium). Moreover, an interaction was present from the baseline AoC in the effect of corrected serum calcium on the progression of AoC, and the effect of hypercalcemia was greater in patients with higher baseline Agatston scores (<i>p</i> = 0.049). <b><i>Conclusion:</i></b> The present study revealed that hypercalcemia is a risk factor for the development of infrarenal abdominal AoC in KTRs. Furthermore, the effect of hypercalcemia was greater in patients with more severe vascular calcification.
DOI: 10.6084/m9.figshare.8427131.v1
title: The effects of female descriptive representation and quotas on public governance outcome

description: The growth of female representation in politics has been enabled by increased employment of seat quotas in national parliaments around the world, visibility and influence of women is the highest ever in the modern era. This, in and of itself, is a indicator of success, however a probe beyond the headcount analysis offered by the descriptive representation construct quizzed whether women representation enabled by quotas contribute to better or more effective governance outcomes and its relational effect on female participation in the civil service. The findings suggest that female participation in politics and the civil service is positively associated with government effectiveness and positively impacts the proportion of women taking up positions in the civil service. Quotas impact governance outcome negatively and the proportion of seats held by women displays evidence of diminishing returns to governance outcomes suggesting there can be quota satiation. <br>
DOI: 10.6084/m9.figshare.8427128.v1
title: Supplementary Material for: Hypercalcemia Is a Risk Factor for the Progression of Aortic Calcification in Kidney Transplant Recipients

description: <b><i>Background/Aims:</i></b> Vascular calcification is common and progressive in chronic kidney disease, including kidney transplant recipients (KTRs). However, the risk factors associated with the progression of aortic calcification (AoC) in KTRs have not been fully elucidated. In the present study, we evaluated AoC and examined the factors associated with its advancement in KTRs. <b><i>Materials:</i></b> This was a prospective longitudinal study that included 98 KTRs. We quantitatively investigated infrarenal abdominal AoC using the Agatston score, as measured by multi-slice computed tomography. After the baseline investigation, a follow-up scan was performed after 3 years, and the Agatston scores were obtained again. The changes in laboratory data affecting the 2nd Agatston scores were examined by multivariable analysis using non-linear regression after adjustment for several confounders. <b><i>Results:</i></b> The 2nd Agatston scores were significantly greater than the baseline Agatston scores (<i>p</i> &lt; 0.001). After adjustment for the confounders, the change in corrected serum calcium exhibited a significant non-linear correlation with the 2nd Agatston scores (<i>p</i> = 0.022 for non-linearity/<i>p</i> = 0.031 for the effect of corrected serum calcium). Moreover, an interaction was present from the baseline AoC in the effect of corrected serum calcium on the progression of AoC, and the effect of hypercalcemia was greater in patients with higher baseline Agatston scores (<i>p</i> = 0.049). <b><i>Conclusion:</i></b> The present study revealed that hypercalcemia is a risk factor for the development of infrarenal abdominal AoC in KTRs. Furthermore, the effect of hypercalcemia was greater in patients with more severe vascular calcification.
DOI: 10.6084/m9.figshare.8427107
title: Women in Latin American science: gender parity in the twenty-first century and prospects for a post-war Colombia

description: The aim of this study was to evaluate the status of gender parity in science in Colombia throughout the twenty-first century. Data were decomposed by research area, researcher rank level and academic level. Gender disparity was also estimated for changes in average age, access to scholarships for postgraduate studies, and number of doctoral graduates. Using logistic function modeling, temporal projections into the future were performed in order to estimate how long could it take to reach gender parity. Medical and health science is the only field to have reached gender parity, while also showing a steady decrease in women’s representation across time. On the other hand, engineering, humanities and natural sciences had the lowest percentages of women’s representation. Women researchers showed a decreasing presence as they move upward to more senior levels, exemplifying the “leaky-pipeline phenomenon” common in science. Possible drivers of these results are analyzed, suggesting that a combination of lack of research funding, insufficient legal framework, pre-existing biases, and poor protection of women’s rights inhibits women’s participation in science. It is estimated that, without any action to change current trends, it could take between 10 (humanities) and 150 (engineering) years to reach gender parity across all research areas.
DOI: 10.6084/m9.figshare.8427071
title: Global modulation in DNA epigenetics during pro-inflammatory macrophage activation

description: DNA methylation patterns create distinct gene-expression profiles. These patterns are maintained after cell division, thus enabling the differentiation and maintenance of multiple cell types from the same genome sequence. The advantage of this mechanism for transcriptional control is that chemical-encoding allows to rapidly establish new epigenetic patterns ‘<i>on-demand</i>’ through enzymatic methylation and demethylation of DNA. Here we show that this feature is associated with the fast response of macrophages during their pro-inflammatory activation. By using a combination of mass spectroscopy and single-molecule imaging to quantify global epigenetic changes in the genomes of primary macrophages, we followed three distinct DNA marks (methylated, hydroxymethylated and unmethylated), involved in establishing new DNA methylation patterns during pro-inflammatory activation. The observed epigenetic modulation together with gene-expression data generated for the involved enzymatic machinery may suggest that de-methylation upon LPS-activation starts with oxidation of methylated CpGs, followed by excision-repair of these oxidized bases and their replacement with unmodified cytosine.