cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15839027
title: Gadgetron Parallel Framework Corresponding Demo Datasets

description: This is the demo datasets that can be used with the open-sourced code for the Gadgetron Parallel Framework: ZihanNing/Practical_Inline_Recon_Framework-public: A practical framework to ease inline deployment of established offline MR reconstruction



SENSE demo (/Gadgetron/Parallel_Framework/SENSE_Recon_Demo): RAW_SWI_forSENSE_integratedACS.dat

AlignSENSE demo (/Gadgetron/Parallel_Framework/AlignSENSE_Recon_Demo):



T1-MPRAGE with auto-calibration lines: RAW_T1_MPRAGE_forAlignSENSE_seperateACS.dat

SWI with external reference scan



external reference scan: RAW_external_REF_forAlignSENSE_alignedSWIsmallFOV.dat

SWI: RAW_SWI_forAlignSENSE_smallFOV_seperateACS.dat





radial NUFFT demo (/Gadgetron/Parallel_Framework/radial_NUFFT_Demo): RAW_radial_multiechoGRE_Sodium_Invivo.dat


For detailed information about the code and instructions, please refer to:



git repo: ZihanNing/Practical_Inline_Recon_Framework-public: A practical framework to ease inline deployment of established offline MR reconstruction

user manual: User manual in Notion for the Gadgetron Parallel Framework
DOI: 10.22002/s4xbc-x4b13
title: caulobacter rs_deletion

description: Raw data files of caulobacter rs_deletion
description: <strong>Tilt Series Date:</strong> 2019-12-07</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Debnath Ghosal collected and processed.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-144/rawdata/</p>Cc_TS77.mrc,  Tilt Series (Pixel Size 0.353 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-144/rawdata/Cc_TS77.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cc_TS77.rec,  Reconstruction (Pixel Size 1.412 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-07-144/3dimage_112293/Cc_TS77.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xn3zsc
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cedrus deodara",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046961-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/4a5zy-abt03
title: Chlorochrmatium aggregatum

description: Consortia, FIB milled sample
description: <strong>Tilt Series Date:</strong> 2019-06-18</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Culture grown by Jean-Marie Volland from LBNL. FIB milled and collected by Wei and Yuxi</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 200 mesh copper, manual blotting, 22 deg C, 100% humidiy</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-06-18-43/rawdata/</p>A2_lam2_tomo1.mrc,  Tilt Series (Pixel Size 0.2678 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-06-18-43/rawdata/A2_lam2_tomo1.mrc"
        > <i class="download icon"></i> Download </a></p>

        A2_lam2_tomo1.rec,  Reconstruction (Pixel Size 1.0712 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-06-18-43/3dimage_104148/A2_lam2_tomo1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/afa74-r3f13
title: Ecoli+Elastin

description: Raw data files of Ecoli+Elastin
description: <strong>Tilt Series Date:</strong> 2018-10-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Seunghyun Sim from Tirrell Lab provided the sample</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-37/rawdata/</p>6N_tilt37.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-37/rawdata/6N_tilt37.mrc"
        > <i class="download icon"></i> Download </a></p>

        6N_tilt37_full.rec,  Reconstruction (Pixel Size 1.56 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2018-10-15-37/3dimage_97661/6N_tilt37_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xsyk4-2me34
title: Fixed-Legionella_pneumophila

description: Raw data files of Fixed-Legionella_pneumophila
description: <strong>Tilt Series Date:</strong> 2019-05-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Shuman lab</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-204/rawdata/</p>HS003C-tomo0010.mrc,  Tilt Series (Pixel Size 0.26 nm), 996.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-204/rawdata/HS003C-tomo0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        HS003C-tomo0010_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-204/3dimage_103973/HS003C-tomo0010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/929wf-gcx24
title: CR2715_Janelia

description: Legionella thyA ΔdotG.This strain is published in Nat Mic (2018). Roy and Liu.
description: <strong>Tilt Series Date:</strong> 2018-08-27</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Legionella thyA ΔdotG.This strain is published in Nat Mic (2018). Roy and Liu.CR2715</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-700/rawdata/</p>CR2715_201808280015.mrc,  Tilt Series (Pixel Size 0.42 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-700/rawdata/CR2715_201808280015.mrc"
        > <i class="download icon"></i> Download </a></p>

        CR2715_201808280015_full.rec,  Reconstruction (Pixel Size 1.68 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-700/3dimage_96220/CR2715_201808280015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.8gcuur
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetraophasis szechenyii",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 351 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046965-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/j9jgv-56954
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-09-11</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, WT</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-15/rawdata/</p>targ12.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-15/rawdata/targ12.mrc"
        > <i class="download icon"></i> Download </a></p>

        targ12_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-15/3dimage_100416/targ12_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pc9bq-q3212
title: Conjugation_Ecoli

description: These are conjugation in Ecoli samples. The cells are the ANB35 cells (donor) and ANB24  .  cells (recipient), More information on these strains can be found in the paper (Direct .  visualization of horizontal gene transfer). These are tomograms from (square 4) in Grid 1 .  from box 4 (See William's notes for more information).  There are cryoLM data for this grid .  obtained during the Linkam stage demo.
description: <strong>Tilt Series Date:</strong> 2019-06-23</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> ANB35, Hfr3000 mrfp1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> None</p>
<strong>Collaborators and Roles:</strong> The samples were sent by Ariel B Lindner (who is the second author on the above-mentioned . paper) in Paris.. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-06-23-35/rawdata/</p>Square4Montage.mrc,  Tilt Series (Pixel Size 0.449 nm), 417.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-06-23-35/rawdata/Square4Montage.mrc"
        > <i class="download icon"></i> Download </a></p>

        Square4Montage.mrc.mdoc,  26.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-06-23-35/rawdata/Square4Montage.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.crtu6t
title: Occurrence Download

description: A dataset containing 10410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Lon melane"
 ]
}

 The dataset includes 10410 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046963-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ney8w-5v073
title: Shewanella oneidensis

description: Raw data files of Shewanella oneidensis
description: <strong>Tilt Series Date:</strong> 2019-01-13</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntom</p>
<strong>Collaborators and Roles:</strong> This mutant was prepared in the lab of Jeffrey A Gralnick at the University of Minnesota. This mutant was ultimately published in the EMBOJ (Kaplan et al., The EMBOJ, 2019)</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-21/rawdata/</p>Shewanella_dfliF24.mrc,  Tilt Series (Pixel Size 0.53 nm), 654.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-21/rawdata/Shewanella_dfliF24.mrc"
        > <i class="download icon"></i> Download </a></p>

        Shewanella_dfliF24.rec,  Reconstruction (Pixel Size 2.12 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-13-21/3dimage_100682/Shewanella_dfliF24.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e3prc-sgk12
title: H. pylori 26695 WT

description: grid box YWC259
description: <strong>Tilt Series Date:</strong> 2017-07-06</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-145/rawdata/</p>20170706_YWC259_10148.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-145/rawdata/20170706_YWC259_10148.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170706_YWC259_10148.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-145/3dimage_85943/20170706_YWC259_10148.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.e7x7xg
title: Occurrence Download

description: A dataset containing 16165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Geometry POLYGON((-80.4399 43.45367,-80.37948 43.45367,-80.37948 43.4859,-80.4399 43.4859,-80.4399 43.45367))"
 ]
}

 The dataset includes 16165 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046966-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/maz1k-n9n28
title: INS-1E with Mito-DsRed

description: CLEM and ECT.
description: <strong>Tilt Series Date:</strong> 2016-07-08</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Cells frozen by Zachary Freyberg at University of Pittsburgh. Collaboration established through Stephen Carter. I performed CryoLM, CLEM and ECT experiments.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-07-08-12/rawdata/</p>MitoTS_12.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-07-08-12/rawdata/MitoTS_12.mrc"
        > <i class="download icon"></i> Download </a></p>

        MitoTS_12-NS_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 201.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2016-07-08-12/3dimage_82098/MitoTS_12-NS_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ackct-pqh54
title: nanowires+type4pili+22500mag+-15d

description: These cells were imaged to detect nanowires (grown using serum bottles) but we did not find them. We found type 4 pili instead.
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 55.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh at USC</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-12/rawdata/</p>atlas1_22500mag0013.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-12/rawdata/atlas1_22500mag0013.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas1_22500mag0013_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-03-06-12/3dimage_52754/atlas1_22500mag0013_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.suqq77
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Farlowella paraguayensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 52 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046967-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/g7jrw-rvf28
title: NR1769/R1-16 conjugation

description: Grid box YWC241-2
description: <strong>Tilt Series Date:</strong> 2017-02-07</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-02-07-1/rawdata/</p>20170207_YWC241_10001.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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        20170207_YWC241_10001_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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