cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hdr7sqvm9
title: Hybridisation and chloroplast capture between distinct Themeda triandra lineages in Australia

description: Ecotypes are distinct populations within a species that are adapted to
 specific environmental conditions. Understanding how these ecotypes become
 established, and how they interact when reunited, is fundamental to
 elucidating how ecological adaptations are maintained. This study focuses
 on Themeda triandra, a dominant grassland species across Asia, Africa and
 Australia. It is the most widespread plant in Australia, where it has
 distinct ecotypes that are usually restricted to either wetter and cooler
 coastal regions or the drier and hotter interior. We generate a de novo
 reference genome for T. triandra and use whole genome sequencing for over
 80 Themeda accessions to reconstruct the evolutionary history of T.
 triandra and related taxa. Organelle phylogenies confirm that Australia
 was colonised by T. triandra twice, with the division between ecotypes
 predating their arrival in Australia. The nuclear genome provides evidence
 of differences in the dominant ploidal level and gene-flow among the
 ecotypes. In northern Queensland there appears to be a hybrid zone between
 ecotypes with admixed nuclear genomes and shared chloroplast haplotypes.
 Conversely, in the cracking claypans of Western Australia, there is
 cytonuclear discordance with individuals possessing the coastal
 chloroplast and interior clade nuclear genome. This chloroplast capture is
 potentially a result of adaptive introgression, with selection detected in
 the rpoC2 gene which is associated with water use efficiency. The reason
 why T. triandra is the most widespread plant in Australia appears to be a
 result of distinct ecotypic genetic variation and genome duplication, with
 the importance of each depending on the geographic scale considered.
description: Phylogenetic trees and alingments.. please see manuscript for
 full details Scripts available from GitHub:
 https://github.com/Sheffield-Plant-Evolutionary-Genomics/Themeda_triandra-2022
description: All text files
DOI: 10.15468/dl.3nxwwj
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of fish fauna collected from river channels on alluvial fans in the Kofu Basin, Japan"
 ]
}

 The dataset includes 416 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003235-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.m37pvmd57
title: Teaching the process of science with primary literature: Using the CREATE pedagogy in ecological courses

description: There have been numerous calls for improved pedagogical practices in
 biological education, and there is a clear need for such improvements in
 ecology and related curricula. Most ecology-related texts lack pedagogy
 and are designed to be content-rich. National initiatives, such as Vision
 & Change, provide guidance on undergraduate biology education,
 including increasing use of evidence-based active learning, and taking a
 more conceptual and science practice skills approach. Biology education
 research is rich with evidence-based teaching practices, which reveal that
 active learning approaches implemented in thoughtful ways lead to strong
 learning gains relative to lecture-based course delivery. CREATE
 (Consider, Read, Elucidate the hypothesis, Analyze and interpret data,
 Think of the next Experiment) integrates evidence-based active pedagogical
 practices into one approach to STEM education that focuses heavily on the
 process of science and science practice skills rather than content
 delivery by replacing the textbook with selected journal articles. The
 approach focuses on deep reading and analysis of primary literature;
 immersing students in the literature is an advantage of the pedagogy.
 CREATE was developed and tested in other biological disciplines (genetics,
 molecular biology) that have long been at the forefront of pedagogical
 best practices in biology. We transformed two upper-level undergraduate
 ecological courses (Conservation Biology & Biodiversity and
 Ecology) into CREATE courses. We provide examples of assignments, student
 work, and assessments of the approach, illustrating the various ways
 CREATE can be successfully implemented. The approach can be adopted in
 part, to ease into it and test it out, or in whole. We recommend that
 ecology teachers consider making their courses more active if they have
 not already done so; adopting pedagogical practices embedded within CREATE
 can be a way to achieve active learning. The CREATE approach and other
 evidence-based pedagogical best practices lead to strong learning gains
 and more inclusive learning environments.
description: These anonymized data were collected using the EcoEvo-MAPS
 assessment tool developed by Summers et al. (2018; CBE—Life Sciences
 Education 17(2):ar18. https://doi.org/10.1187/cbe.17-02-0037). Students in an upper-level ecology course at Davidson College (Davidson, NC, USA) taught in Fall 2016 and Fall 2018 took the assessment at the beginning and end of the course.
description: This is a MS Excel file.
DOI: 10.15468/dl.ttq5ec
title: Occurrence Download

description: A dataset containing 1709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Ephemera vulgata"
 ]
}

 The dataset includes 1709 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003232-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fbg79cnxz
title: Data on community-based health insurance enrollment trends in northeast Ethiopia

description: Background The term "community-based health insurance" refers to
 a broad range of nonprofit, prepaid health financing models designed to
 meet the health financing needs of disadvantaged populations, particularly
 those in the rural and informal sectors. Due to their voluntary
 nature, such initiatives suffer from persistently low coverage in low- and
 middle-income countries. In Ethiopia, the schemes’ membership growth has
 not been well investigated so far. This study sought to examine the
 scheme's enrollment trend over a five-year period, and to explore the
 various challenges that underpin membership growth from the perspectives
 of various key stakeholders. Results Over the course of the study period,
 enrollment in the scheme at both districts exhibited non-linear trends
 with both positive and negative growth rates being identified. Overall,
 the scheme in Tehulederie has a relatively higher population coverage and
 better membership retention, which could be due to the strong foundation
 laid by a rigorous public awareness campaign and technical support during
 the pilot phase. The challenges contributing to the observed level of
 performance have been summarized under four main themes that include
 quality of health care, claims reimbursement for insurance holders,
 governance practices, and community awareness and acceptability. 
 Conclusions The scheme experienced negative growth ratios in both
 districts, indicating that it is not functionally viable. It will fail to
 meet its mission unless relevant stakeholders at all levels of government
 demonstrate political will and commitment to its implementation, as well
 as advocate for the community. Interventions should target on the
 highlighted challenges in order to boost membership growth and ensure the
 scheme’s viability.
DOI: 10.5061/dryad.j9kd51cgg
title: Octopus bimaculoides visually-evoked prey capture

description: Octopus limb hyper-redundancy complicates traditional motor control system
 theory by its extensive sensory inputs, subsequent decision making and arm
 coordination. Octopus are thought to reduce flexibility control complexity
 by relying on highly stereotypical motor primitives (e.g. reaching and
 crawling) and multi-level processes to coordinate movement utilizing
 extensive peripheral nervous system (PNS) processing. Division of labor
 along the anterior-posterior axis and limb- specialization of the four
 anterior arms in T-maze food retrieval further simplify control. Yet,
 specific arm recruitment and coordination during visually guided reaching
 behavior remains poorly understood. Here, we investigated visually
 triggered Octopus bimaculoides hunting capabilities by eliciting and
 examining prey-specific arm recruitment. When striking crabs, octopus
 preferred synchronous arm recruitment while sequential arm recruitment
 with a characteristic swaying movement is employed for shrimp. Such
 behavioral selection aligns with specific prey escape strategies and the
 octopus' flexible arm biomechanical constraints. Although side bias
 existed, we found significant bilateral symmetry, with one side being
 functionally a mirror of the other rather than anterior arm use being
 functionally equal and differing to posterior arm use. Among arms, the
 second limb is unequivocally dominant for goal-directed monocularly driven
 prey capture. While the eight arms share gross anatomy and are considered
 equipotential, such arm specialization for specific actions could reflect
 different degrees of specialization in organismal structures. Finally, we
 quantitatively show, corroborating earlier observations, that octopus
 employ a dimension reduction strategy by actively deciding to recruit
 adjacent arms over other available arms during either sequential or
 synchronous visually triggered prey attack.
DOI: 10.15468/dl.vfj2c9
title: Occurrence Download

description: A dataset containing 4748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arcella",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4748 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003234-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.v6wwpzh03
title: Co-occurrence of antimicrobials and metals in swine manure as potential drivers of antimicrobial resistance in the environment

description: In many regions of the United States (US) and other countries, animal
 manures are often agronomically applied to cropland to recycle nutrients.
 However, aggregated manure wastes commonly contain contaminants including
 veterinary antimicrobials, heavy metals, and antimicrobial resistance
 genes (ARGs) that can stimulate the development and proliferation of
 antimicrobial resistance (AMR). While the presence of antimicrobials in
 manure is well-documented, very little has been reported on the
 co-occurrence of other chemical stressors in swine manure that may
 stimulate AMR spread in exposed bacteria. This study quantifies and
 analyzes correlations between antimicrobials, metals, and certain ARGs
 present in manure samples from swine farms in Iowa, US. Relationships
 between contaminants and different stages of swine production or feed
 composition are also investigated. Results revealed notable levels of
 tetracyclines (up to 1,260 µg g-1 dry weight (d.w.) of manure for
 oxytetracycline) detected in all samples. Tiamulin, two ionophores
 (monensin and lasalocid), and one macrolide (tilmicosin) were detected at
 maximum class concentrations of 9.4, 0.547, and 0.472 µg g-1 d.w.,
 respectively. The median relative abundances of ErmB and TetM were 0.13
 and 0.17 copies g-1 wet weight (w.w.) manure (normalized to 16S gene),
 respectively. Additionally, high levels of copper (Cu), iron (Fe), and
 zinc (Zn) were detected in all samples, with maximum concentrations of
 887, 1,900, and 2,100 µg g-1 d.w., respectively. Notably, uranium was
 detected in 11 samples, at concentrations up to 0.77 µg g-1. A global
 analysis of AMR-stressor relationships using Spearman's rank
 correlation indicates Cu, and Ba are the most positively and significantly
 correlated with anhydrotetracycline (ATC) and/or anhydrochlortetracycline
 (ACTC) concentrations in all tested facilities (Cu-ATC: ρ = 0.67, p =
 0.0093; Cu-ACTC: ρ = 0.75, p = 0.0022; Ba-ATC: ρ = 0.84, p = 0.0002).
 Interestingly, ermB and tetM genes were strongly, positively correlated to
 each other (ρ=0.92, p= 0.000), suggesting possible co-selection, despite
 the absence of correlation between ARGs and tetracycline concentrations.
 This study demonstrates the complexity of interactions between
 antimicrobials, metals, and ARGs in multiple manure storage pits prior to
 cropland application.
description: Please refer to the method section within the manuscript.
description: Microsoft Excel
DOI: 10.5061/dryad.5hqbzkh8p
title: Viscoelastic properties of suspended cells measured with shear flow deformation cytometry

description: Numerous cell functions are accompanied by phenotypic changes in
 viscoelastic properties, and measuring them can help elucidate
 higher-level cellular functions in health and disease. We present a
 high-throughput, simple and low-cost microfluidic method for
 quantitatively measuring the elastic (storage) and viscous (loss) modulus
 of individual cells. Cells are suspended in a high-viscosity fluid and are
 pumped with high pressure through a 5.8 cm long and 200 μm wide
 microfluidic channel. The fluid shear stress induces large, near
 ellipsoidal cell deformations. In addition, the flow profile in the
 channel causes the cells to rotate in a tank-treading manner. From the
 cell deformation and tank treading frequency, we extract the
 frequency-dependent viscoelastic cell properties based on a theoretical
 framework developed by R. Roscoe that describes the deformation of a
 viscoelastic sphere in a viscous fluid under steady laminar flow. We
 confirm the accuracy of the method using atomic force
 microscopy-calibrated polyacrylamide beads and cells. Our measurements
 demonstrate that suspended cells exhibit power-law, soft glassy
 rheological behavior that is cell cycle-dependent and mediated by the
 physical interplay between the actin filament and intermediate filament
 networks.
description: Please refer to the article (10.7554/eLife.78823) for details on how
 the dataset was collected and how it has been
 processed.<br>
description: We provide the data as CSV files (comma-separated uncompressed
 plain text, the first row contains a header specifying the meaning of each
 column, and the second row specifying the physical units) and Python
 scripts for data analysis and presentation.
DOI: 10.5061/dryad.573n5tbb2
title: Data from: Transforming medical education in Liberia through an international community of inquiry (2016 dataset)

description: A critical component of building capacity in Liberia’s physician workforce
 involves strengthening the country’s only medical school, A.M. Dogliotti
 College of Medicine. Beginning in 2015, senior health sector stakeholders
 in Liberia invited faculty and staff from U.S. academic institutions and
 non-governmental organizations to join a partnership focused on improving
 undergraduate medical education in Liberia. Over the subsequent six years,
 the members of this partnership came together through an iterative,
 mutual-learning process and created what William Torbert et al describe as
 a “community of inquiry,” in which practitioners and researchers pair
 action and inquiry toward evidence-informed practice and organizational
 transformation. This community of inquiry developed around a few key
 institutional and interpersonal relationships but expanded over time.
 Incorporating faculty, practitioners, and students from Liberia and the
 U.S., the community of inquiry consistently focused on following the
 vision, goals, and priorities of leadership in Liberia, irrespective of
 funding source or institutional affiliation. The work of the community of
 inquiry has incorporated multiple mixed methods assessments, stakeholder
 discussions, strategic planning, and collaborative self-reflection,
 resulting in transformation of M.D. education in Liberia. We suggest that
 the community of inquiry approach reported here can serve as a model for
 others seeking to form sustainable, international global health
 partnerships focused on organizational transformation.
description: To develop the initial research
 study in 2016, a Yale faculty member and a group of Yale undergraduate
 students collaborated with Liberia’s Minister of Health and Minister of
 Education and a Liberian medical student appointed by the Minister of
 Health to adapt a validated survey instrument used by the Association of
 American Medical Colleges to fit the Liberian context, with the goal of
 identifying current challenges at AMD.<sup>20</sup> The survey
 was administered to current AMD students, and respondents’ answers were
 compiled as summary statistics, followed by an examination of the
 tie-adjusted Spearman rank correlation between responses to questions and
 whether students had considered dropping out and/or had ever wondered
 about whether they would graduate. The data analysis team utilized this
 test statistic because it performs well with data that are skewed towards
 extremes and does not rely on standard assumptions of normality. The
 significance of each correlation value was tested at the standard p = 0.05
 level. All data analysis was conducted using the R software package
 version 3.3.2.
DOI: 10.5061/dryad.j3tx95xj6
title: Data from: Transforming medical education in Liberia through an international community of inquiry (2018 dataset)

description: A critical component of building capacity in Liberia’s physician workforce
 involves strengthening the country’s only medical school, A.M. Dogliotti
 College of Medicine. Beginning in 2015, senior health sector stakeholders
 in Liberia invited faculty and staff from U.S. academic institutions and
 non-governmental organizations to join a partnership focused on improving
 undergraduate medical education in Liberia. Over the subsequent six years,
 the members of this partnership came together through an iterative,
 mutual-learning process and created what William Torbert et al describe as
 a “community of inquiry,” in which practitioners and researchers pair
 action and inquiry toward evidence-informed practice and organizational
 transformation. This community of inquiry developed around a few key
 institutional and interpersonal relationships but expanded over time.
 Incorporating faculty, practitioners, and students from Liberia and the
 U.S., the community of inquiry consistently focused on following the
 vision, goals, and priorities of leadership in Liberia, irrespective of
 funding source or institutional affiliation. The work of the community of
 inquiry has incorporated multiple mixed methods assessments, stakeholder
 discussions, strategic planning, and collaborative self-reflection,
 resulting in transformation of M.D. education in Liberia. We suggest that
 the community of inquiry approach reported here can serve as a model for
 others seeking to form sustainable, international global health
 partnerships focused on organizational transformation.
description: To explore the professional knowledge,
 experience, goals, and self-assessed competencies of 5<sup>th</sup>-year
 medical students, AMD alumni, and other practicing physicians in and
 around Liberia, U.S. academic faculty developed a survey instrument, which
 was reviewed and revised by AMD faculty and administrators. Survey
 responses were offered on a five-point Likert scale. A
 separate section of the survey presented the current AMD curriculum,
 asking AMD alumni to assess its relevance to training future physicians
 for the practice of medicine and to determine whether each course had been
 delivered in a manner that AMD alumni felt was either adequate or
 inadequate. This survey was developed to capture a wide range of data
 related to physician training and pipeline development in Liberia. Results
 relevant to undergraduate medical education and curriculum revision at AMD
 are presented here. A research
 team comprised of Liberian and U.S. faculty and staff administered the
 survey on paper to 124 respondents, which included final-year
 medical students and physicians including interns, residents, and
 faculty, and then inputted the
 survey data into REDCap
 electronic data capture tools hosted at Vanderbilt
 University. REDCap (Research
 Electronic Data Capture) is a secure, web-based software platform designed
 to support data capture for research studies. Data are presented as
 summary statistics.
DOI: 10.5281/zenodo.18400715
title: GCM output (diagfi) from Early Mars simulation with ocean heat transport (OHT ON)

description: This dataset contains the diagfi output file from a 3D Global Climate Model (Generic-PCM) simulation of early Mars performed with interactive ocean heat transport (OHT enabled).

The simulation explores surface and atmospheric conditions under a dense CO₂–H₂ atmosphere, representative of early Mars climate scenarios capable of supporting transient liquid water. Ocean dynamics are represented using a dynamical slab ocean model, allowing lateral redistribution of heat by ocean circulation and interactive coupling with the atmosphere.
DOI: 10.5281/zenodo.18400716
title: GCM output (diagfi) from Early Mars simulation with ocean heat transport (OHT ON)

description: This dataset contains the diagfi output file from a 3D Global Climate Model (Generic-PCM) simulation of early Mars performed with interactive ocean heat transport (OHT enabled).

The simulation explores surface and atmospheric conditions under a dense CO₂–H₂ atmosphere, representative of early Mars climate scenarios capable of supporting transient liquid water. Ocean dynamics are represented using a dynamical slab ocean model, allowing lateral redistribution of heat by ocean circulation and interactive coupling with the atmosphere.
DOI: 10.5061/dryad.t4b8gtj50
title: See no evil in the voice-to-voice customer service context

description: A sample of more than 28,000 front-line employee (FLE) - customer
 interactions, extrapolating from foundational framing, we pit conventional
 service approaches against one another to propose a dual-process model,
 situating customer frustration/satisfaction as mediators of the indirect
 relationships between resolution/relational tactics and call duration – a
 key customer service efficiency outcome.
description: In order to provide an internally valid empirical foundation to
 test our model, the sampling frame we adopt was based on a random sample
 of inbound calls received over a one-year time frame, resulting in 28,103
 dyadic interactions, handled by a total of two-hundred and seventeen
 separate FLEs, employed at four call centers located across the US. The
 data on which our analyses are based was provided by a Fortune 500,
 nationally – branded, market-leading insurance company headquartered in
 the US. To account for the nested structure of the
 complex data that underlie our analyses, we estimated one omnibus
 moderated-mediation, random-effects model in Mplus v. 8 (Muthén &
 Muthén, 2017). This approach allows us to take into account complex
 sampling features related to our panel data, including generating robust
 standard errors (Thompson, 2011), teasing out variations potentially
 caused between FLEs, thereby controlling for omitted, unobserved effects
 related to the ways in which the 217 FLEs handled each call (Germann et
 al., 2015).
description: We are including our analysis code because the data is not
 available due to its proprietary nature and a non-disclosure agreement. An
 example of the data has been provided.