cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13928013
title: Coordination between endoderm progression and mouse gastruloid elongation controls endodermal morphotype choice

description: Live imaging microscopy data set used in the publication "Coordination between endoderm progression and mouse gastruloid elongation controls endodermal morphotype choice". 

Farag et. al., Dev Cell 2024 Sep 9;59(17):2364-2374.e4. doi: 10.1016/j.devcel.2024.05.017.

The data set contains:



Epifluorescence time series imaging of Brachyury-GFP/Sox17-RFP gastruloids between 48 and 96 hours post aggregation. Format : .nd2 files (can be opened with NIS Viewer or Fiji software).

Excel table with raw and reduced set of morphological and expression features manually extracted from this data set. The reduced set (DT) was used in our paper to learn the decision tree classifiers.
DOI: 10.5281/zenodo.13928014
title: Coordination between endoderm progression and mouse gastruloid elongation controls endodermal morphotype choice

description: Live imaging microscopy data set used in the publication "Coordination between endoderm progression and mouse gastruloid elongation controls endodermal morphotype choice". 

Farag et. al., Dev Cell 2024 Sep 9;59(17):2364-2374.e4. doi: 10.1016/j.devcel.2024.05.017.

The data set contains:



Epifluorescence time series imaging of Brachyury-GFP/Sox17-RFP gastruloids between 48 and 96 hours post aggregation. Format : .nd2 files (can be opened with NIS Viewer or Fiji software).

Excel table with raw and reduced set of morphological and expression features manually extracted from this data set. The reduced set (DT) was used in our paper to learn the decision tree classifiers.
DOI: 10.5281/zenodo.15102463
title: Test upload to demonstrate private sharing for peer review and DBR

description: This is a dummy file to demonstrate how figshare supports private sharing for peer review, double blind review, and open data uponacceptance.
DOI: 10.5281/zenodo.15102464
title: Test upload to demonstrate private sharing for peer review and DBR

description: This is a dummy file to demonstrate how figshare supports private sharing for peer review, double blind review, and open data uponacceptance.
DOI: 10.15468/dl.wwptzr
title: Occurrence Download

description: A dataset containing 7552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530",
 "TaxonKey is Doricha eliza (R.Lesson & Delattre, 1839)"
 ]
}

 The dataset includes 7552 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005599-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3mesp
title: Occurrence Download

description: A dataset containing 889532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.5.1_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2018"
 ]
}

 The dataset includes 889532 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005576-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmvnge
title: Occurrence Download

description: A dataset containing 968540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.5.1_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2021-2022"
 ]
}

 The dataset includes 968540 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005577-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrbzgd
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ismene amancaes (Ruiz & Pav.) Herb."
 ]
}

 The dataset includes 122 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005600-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m64kvf
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mazama pandora Merriam, 1901",
 "Year 1981-2010"
 ]
}

 The dataset includes 241 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005601-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyva96
title: Occurrence Download

description: A dataset containing 623265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.5.1_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2023-2025"
 ]
}

 The dataset includes 623265 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005579-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9tqkn
title: Occurrence Download

description: A dataset listing the 14527 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset's 14527 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005593-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6090268
title: GPR dataset Boulder Clay Antarctica

description: A complete GPR dataset collected on the Boulder Clay Glacier (Antactica) is provided.

Data are in SEG-Y format and geographic coordinates are also in the dataset.

Please refer to the readme files for further information.
DOI: 10.5281/zenodo.6090267
title: GPR dataset Boulder Clay Antarctica

description: A complete GPR dataset collected on the Boulder Clay Glacier (Antactica) is provided.

Data are in SEG-Y format and geographic coordinates are also in the dataset.

Please refer to the readme files for further information.
DOI: 10.6084/m9.figshare.28410455
title: Anticancer activity of thymoquinone in non-small cell lung cancer and possible involvement of PPAR-<i>γ</i> pathway

description: Thymoquinone (TQ) is an ingredient of <i>Nigella sativa</i> and Cisplatin (CDDP) is the most active chemotherapeutic agent in lung cancer. The objective of this study was to assess the anticancer effects of TQ in non-small cell lung cancer (NSCLC) cells, and its effect on the peroxisome proliferator-activated receptor gamma (PPAR-<i>γ</i>) pathway. Annexin-V FITC assay was used in the NCI-H460 cell line for apoptosis. The mRNA expression of PPAR-<i>γ</i>, P53, BCL-2, Retinoblastoma (Rb), Cyclin-D1, RELA, Tumor necrosis Factor alpha and in a dose-dependent manner TQ activated caspases 9, 8, 7, and 3 were examined using quantitative real-time reverse transcriptase polymerase chain reaction. PPAR-<i>γ</i> protein levels elevated in all treatment groups, especially in the CDDP + TQ group as observed in mRNA results. In the CDDP + TQ + IR group, the reduction of NF-κB pathway, which provides survival and growth signaling, confirms the potential of this treatment in lung cancer treatment approach similar to p53, Rb, and PPAR-<i>γ</i> results. When the effect of treatment on the viability of NSCLC cells was assessed with flow cytometry analyzes, TQ alone supported death compared to control, cell viability also decreased in the CDDP or IR groups to which TQ was added. As a result, combined therapy of TQ, CDDP, and IR have been shown to increase apoptosis by sensitizing NSCLC cells to IR. These in vitro results are the basis because they demonstrate that it may be useful to include TQ in combined NSCLC cell treatments to reduce tumor progression.
DOI: 10.6084/m9.figshare.28410455.v1
title: Anticancer activity of thymoquinone in non-small cell lung cancer and possible involvement of PPAR-<i>γ</i> pathway

description: Thymoquinone (TQ) is an ingredient of <i>Nigella sativa</i> and Cisplatin (CDDP) is the most active chemotherapeutic agent in lung cancer. The objective of this study was to assess the anticancer effects of TQ in non-small cell lung cancer (NSCLC) cells, and its effect on the peroxisome proliferator-activated receptor gamma (PPAR-<i>γ</i>) pathway. Annexin-V FITC assay was used in the NCI-H460 cell line for apoptosis. The mRNA expression of PPAR-<i>γ</i>, P53, BCL-2, Retinoblastoma (Rb), Cyclin-D1, RELA, Tumor necrosis Factor alpha and in a dose-dependent manner TQ activated caspases 9, 8, 7, and 3 were examined using quantitative real-time reverse transcriptase polymerase chain reaction. PPAR-<i>γ</i> protein levels elevated in all treatment groups, especially in the CDDP + TQ group as observed in mRNA results. In the CDDP + TQ + IR group, the reduction of NF-κB pathway, which provides survival and growth signaling, confirms the potential of this treatment in lung cancer treatment approach similar to p53, Rb, and PPAR-<i>γ</i> results. When the effect of treatment on the viability of NSCLC cells was assessed with flow cytometry analyzes, TQ alone supported death compared to control, cell viability also decreased in the CDDP or IR groups to which TQ was added. As a result, combined therapy of TQ, CDDP, and IR have been shown to increase apoptosis by sensitizing NSCLC cells to IR. These in vitro results are the basis because they demonstrate that it may be useful to include TQ in combined NSCLC cell treatments to reduce tumor progression.
DOI: 10.15151/esrf-es-2019825378
title: Swiss consortium in macromolecular X-ray crystallography structure determination for academic researchers: EPFL, UNIL, UNIGE, Zurich and SL

description: This proposal builds upon the foundation established in BAG MX 2521 and represents a collaborative effort among prominent Swiss academic institutions, including EPFL, UNIL, UNIGE and SLS. Under the leadership of Dr. Florence Pojer, the head of EPFL's Protein Production and Structure core facility, this initiative aims to streamline and enhance the process of determination of macromolecules structures by X-ray crystallography. Notably, the automated data collection established at ESRF has revolutionized our current pipeline, enabling the analysis of over 1000 crystals and the finalization at high-resolution of around 40 different structures in the past year alone. These achievements span diverse projects ranging from drug discovery to the design of novel protein folds. In addition, two PIs from University of Zurich, with expertise in structural biology, are joining this BAG.
DOI: 10.15468/dl.mv464g
title: Occurrence Download

description: A dataset listing the 30 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "GadmGid is one of (COL.8.12_2, COL.8.10_2, COL.8.18_2)",
 "Elevation 1490-2200m"
 ]
 }
 ]
}

 The dataset's 30 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005597-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mh5y8g
title: Occurrence Download

description: A dataset containing 47209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylocopa virginica (Linnaeus, 1771), Xylocopa virginica texana Cresson, 1872, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica virginica, Xylocopa virginica virginica, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica texana Cresson, 1872, Xylocopa virginica texana Cresson, 1872, Xylocopa virginica virginica, Xylocopa virginica virginica)",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material sample)"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 2000",
 "HasCoordinate is true",
 "Year is greater than or equal to 1960"
 ]
}

 The dataset includes 47209 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005604-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew7n39
title: Occurrence Download

description: A dataset containing 385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Muntiacus muntjak (Zimmermann, 1780)",
 "Year 1981-2010"
 ]
}

 The dataset includes 385 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005607-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7edwg
title: Occurrence Download

description: A dataset containing 47209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylocopa virginica (Linnaeus, 1771), Xylocopa virginica texana Cresson, 1872, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica virginica, Xylocopa virginica virginica, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica krombeini Hurd, 1961, Xylocopa virginica texana Cresson, 1872, Xylocopa virginica texana Cresson, 1872, Xylocopa virginica virginica, Xylocopa virginica virginica)",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material sample)"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 2000",
 "HasCoordinate is true",
 "Year is greater than or equal to 1960"
 ]
}

 The dataset includes 47209 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005605-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15096166
title: Hourly Anomaly Scores and Leak Labels from a Multi-Source Urban Water Distribution Network Dataset

description: Dataset: Hourly Anomaly Scores and Leak Labels from a Multi-Source Urban Water Distribution Network Dataset

Description:This dataset includes hourly time series from an anonymized urban Water Distribution Network (WDN), combining SCADA sensor readings, operational energy usage, and environmental conditions. Anomaly scores were generated using Elastic ML and Isolation Forest. Binary labels indicate proximity (±7 days) to real leak events.

Columns:- timestamp: DD-MM-YYYY HH:00- fault_d7: Binary leak proximity label- *_kW, *_power_hour: Energy-based anomaly scores- *_ws_*: Sensor-based anomaly scores (pressure, temp, vigor)- temp_site1_anomaly_score: Environmental temperature anomalies- gw_lvl_site2_anomaly_score: Groundwater level anomalies
DOI: 10.5281/zenodo.15096167
title: Hourly Anomaly Scores and Leak Labels from a Multi-Source Urban Water Distribution Network Dataset

description: Dataset: Hourly Anomaly Scores and Leak Labels from a Multi-Source Urban Water Distribution Network Dataset

Description:This dataset includes hourly time series from an anonymized urban Water Distribution Network (WDN), combining SCADA sensor readings, operational energy usage, and environmental conditions. Anomaly scores were generated using Elastic ML and Isolation Forest. Binary labels indicate proximity (±7 days) to real leak events.

Columns:- timestamp: DD-MM-YYYY HH:00- fault_d7: Binary leak proximity label- *_kW, *_power_hour: Energy-based anomaly scores- *_ws_*: Sensor-based anomaly scores (pressure, temp, vigor)- temp_site1_anomaly_score: Environmental temperature anomalies- gw_lvl_site2_anomaly_score: Groundwater level anomalies
DOI: 10.26036/cnp0006270
title: A telomere-to-telomere genome assembly for greater yam (Dioscorea alata)

description: Presenting a telomere-to-telomere (T2T) gap-free genome of greater yam cultivar "ziyushenshu", which is resistant to anthracnose, providing a complete reference genome for scientific research.
DOI: 10.15468/dl.kh8mye
title: Occurrence Download

description: A dataset containing 21830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vitis rotundifolia Michx."
 ]
}

 The dataset includes 21830 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005608-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uretp
title: Occurrence Download

description: A dataset listing the 30 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "GadmGid is one of (COL.8.12_2, COL.8.10_2, COL.8.18_2)",
 "Elevation 1490-2200m"
 ]
 }
 ]
}

 The dataset's 30 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005602-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zerjr
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005609-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3hf7e
title: Occurrence Download

description: A dataset containing 59772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Characiformes"
 ]
}

 The dataset includes 59772 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005603-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baba7v
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Heliotropium krauseanum subsp. jahuayense Luebert, Nolana cerrateana Ferreyra, Haageocereus australis Backeb., Cleistocactus clavispinus (Rauh & Backeb.) Ostolaza, Boerhavia verbenacea Killip, Monnina weberbaueri Chodat, Quinchamalium brevistaminatum Pilg., Nolana coronata Ruiz & Pav., Nolana johnstonii Vargas, Solanum murphyi I.M.Johnst.)"
 ]
}

 The dataset includes 195 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48573/0y0t-2z08
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand November 2023 überarbeitete Version
title: Local Media in Switzerland and Liechtenstein: Overview as of November 2023 edited version
DOI: 10.48573/8f65-dd43
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand Juli 2022
title: Local Media in Switzerland and Liechtenstein: Overview as of July 2022
DOI: 10.48573/qsza-q542
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand Juli 2022
title: Local Media in Switzerland and Liechtenstein: Overview as of July 2022
DOI: 10.48573/t5pt-zd42
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand November 2023
title: Local Media in Switzerland and Liechtenstein: Overview as of November 2023
DOI: 10.48573/91p1-m113
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand Januar 2025
title: Local Media in Switzerland and Liechtenstein: overview as of January 2025
DOI: 10.48573/fjse-1208
title: Lokalmedien in der Schweiz und Liechtenstein: Übersicht Stand Januar 2025
title: Local Media in Switzerland and Liechtenstein: overview as of January 2025
DOI: 10.15468/dl.khg26y
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-82.82392 25.74793,-81.53147 25.74793,-81.53147 28.26697,-82.82392 28.26697,-82.82392 25.74793))",
 "TaxonKey is Pomacea canaliculata (Lamarck, 1822)"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10722716
title: Mean modelled dust mass concentration vertical profile (Junes 2010-2014) at Sahara, Canaries, Cape Verde and Caribbean (HadGEM3-GA7.1)

description: Authors: Natalie G. Ratcliffe, Claire L. Ryder, Nicolas Bellouin, Stephanie Woodward, Anthony Jones and Ben Johnson

Date: 29/2/2024

If you use this data, please cite the DOI: 10.5281/zenodo.10722717

 

Mean dust mass concentration profile in Junes 2010-2014 from the Met Office Unified Model HadGEM3-GA7.1 simulation over four box regions. Mass concentration (in ug m-3) is separated into six size bins (0.063-0.2, 0.2-0.632, 0.632-2, 2-6.32, 6.32-20 and 20-63.2) by particle diameter (um). The altitude is given in metres. Values at ambient conditions.

Mass concentration files are named '[location]_dust_mean.txt'.

The box regions which the dust mass concentrations are averaged over are listed here:

Sahara region: 17-28N, 12W-3E

Canaries region: 28-35N, 22-12W

Cape Verde region: 12-21N, 26-18W

Caribbean region: 11-19N, 65-56W

 

The AOD (aerosol optical depth) file is saved as 'aod_mean.txt'.

The AOD data is available between 1S-47N and 69W-2W.