cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0133896.10fu
title: SH0133896.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive145738.20241212.9.2
title: Sporosarcina pasteurii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive145738.20251217.10
title: Sporosarcina pasteurii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0133897.10fu
title: SH0133897.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive145739.20241212.9.2
title: Bacillus firmus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive145739.20251217.10
title: Bacillus firmus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0133898.10fu
title: SH0133898.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive145740.20230509.8.1
title: Bacillus firmus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive145740.20251217.10
title: Bacillus firmus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0133899.10fu
title: SH0133899.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.fh2amp
title: Occurrence Download

description: A dataset containing 3861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Tsuga (Endl.) Carrière"
 ]
}

 The dataset includes 3861 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045764-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27324984
title: A global dataset of the national green and blue water footprint of livestock feeds

description: The green and blue water footprint for 140 selected feed products across 262 countries, for the average period between 2015 and 2019.
DOI: 10.6084/m9.figshare.27324984.v1
title: A global dataset of the national green and blue water footprint of livestock feeds

description: The green and blue water footprint for 140 selected feed products across 262 countries, for the average period between 2015 and 2019.
DOI: 10.15468/dl.tnxfzw
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ctenophora",
 "Year 2000-2022"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045765-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ztub8
title: Occurrence Download

description: A dataset containing 3019136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3019136 records from 1132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045763-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfprt8
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Podocarpus L'Hér. ex Pers."
 ]
}

 The dataset includes 718 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045766-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phfeqk
title: Occurrence Download

description: A dataset containing 23828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Cupressaceae"
 ]
}

 The dataset includes 23828 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045767-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28078916
title: modified IEEE 118 bus electricity system and 90-node gas system dataset

description: modified IEEE 118 bus electricity system and 90-node gas system dataset
DOI: 10.15468/dl.8brgn6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nesobasis rito sp. nov. (Zygoptera: Coenagrionidae), a new species of forest damselfly from Vanua Levu, Fiji"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045769-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14506732
title: AsanteTwiSenti: A Sentiment Dataset of Ghanaian Asante Twi Tweets in a Multilingual Context.

description: AsanteTwiSenti, a comprehensive sentiment dataset of  Ghanaian Asante Twi language  tweets scraped from Twitter. The AsanteTwiSenti corpus contains 9,507 manually annotated tweets labeled as Positive, Negative, Neutral, Ghanaian-Pidgin, multilingual, and Monolingual.
DOI: 10.5281/zenodo.14506733
title: AsanteTwiSenti: A Sentiment Dataset of Ghanaian Asante Twi Tweets in a Multilingual Context.

description: AsanteTwiSenti, a comprehensive sentiment dataset of  Ghanaian Asante Twi language  tweets scraped from Twitter. The AsanteTwiSenti corpus contains 9,507 manually annotated tweets labeled as Positive, Negative, Neutral, Ghanaian-Pidgin, multilingual, and Monolingual.
DOI: 10.5519/qd.kxg7ux9v
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5911486 records)
DOI: 10.15468/dl.fym5j6
title: Occurrence Download

description: A dataset containing 3122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Larix Mill."
 ]
}

 The dataset includes 3122 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045771-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbku3p
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guibemantis liber (Peracca, 1893)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 285 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003230-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23636/qhvt-zg69
title: Frederick May's London Press Dictionary and Advertiser's Handbook (1883-1911)

description: Newspaper directories produced and published annually in contemporary 19th Britain by advertising agent Frederick May and successors, containing information on newspapers, magazines and periodicals and arranged in alphabetical and sometimes tabular order. Information for each title included price publisher office political and religious leaning
description: London, UK
DOI: 10.15468/dl.vfprjb
title: Occurrence Download

description: A dataset containing 7047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyrinophilus porphyriticus (Green, 1827)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7047 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003235-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15093441
title: Pan-reactome analysis of Streptomyces strains reveals association and disconnection between primary and secondary metabolism

description: Table S1.xlsx:

Details on genome data, biosynthetic gene cluster (BGC) statistics, and fastANI results for average nucleotide identity (ANI) among the 242 Streptomyces strains considered in this study.

Table S2.xlsx:

Details on all BGCs from antiSMASH among the 242 Streptomyces strains considered in this study and their corresponding gene cluster families (GCFs) from BiG-SCAPE.

Table S3.xlsx:

Validation results of genome-scale metabolic models (GEMs) for Streptomyces avermitilis MA-4680 and Streptomyces coelicolor A3(2) using phenotype microarray data, and for 20 Streptomyces strains using literature.

Table S4.xlsx:

Number of reactions, metabolites, and genes in the GEMs of the 242 Streptomyces strains.

Table S5.xlsx:

Jaccard similarities between presence vectors of reactions from the 242 Streptomyces GEMs and those of GCFs from BiG-SCAPE for the 242 Streptomyces strains.

Table S6.xlsx:

Summary of precursor requirements for all BGCs and the precursor biosynthetic capability of Streptomyces strains. A total of four categories were considered between the precursor producibility and precursor requirement.

Table S7.xlsx:

Metabolites and reactions suggested to be necessary for the biosynthesis of 20 secondary metabolite precursors according to the literature.

Table S8.xlsx:

List of genes predicted to be horizontally transferred among those within BGCs.

models_final_241108.zip:

SBML files of Streptomyces GEMs

 

 
description: This work was supported by National Research Foundation of Korea through the following programs: The Bio & Medical Technology Development Program (RS-2024-00509338); the ERC Center (2022R1A5A1033719); and the Development of next-generation biorefinery platform technologies for leading bio-based chemicals industry project (2022M3J5A1056072); and the Development of platform technologies of microbial cell factories for the next-generation biorefineries project (2022M3J5A1056117). This study was supported by the KAIST Cross-Generation Collaborative Lab project.
DOI: 10.5281/zenodo.15093442
title: Pan-reactome analysis of Streptomyces strains reveals association and disconnection between primary and secondary metabolism

description: Table S1.xlsx:

Details on genome data, biosynthetic gene cluster (BGC) statistics, and fastANI results for average nucleotide identity (ANI) among the 242 Streptomyces strains considered in this study.

Table S2.xlsx:

Details on all BGCs from antiSMASH among the 242 Streptomyces strains considered in this study and their corresponding gene cluster families (GCFs) from BiG-SCAPE.

Table S3.xlsx:

Validation results of genome-scale metabolic models (GEMs) for Streptomyces avermitilis MA-4680 and Streptomyces coelicolor A3(2) using phenotype microarray data, and for 20 Streptomyces strains using literature.

Table S4.xlsx:

Number of reactions, metabolites, and genes in the GEMs of the 242 Streptomyces strains.

Table S5.xlsx:

Jaccard similarities between presence vectors of reactions from the 242 Streptomyces GEMs and those of GCFs from BiG-SCAPE for the 242 Streptomyces strains.

Table S6.xlsx:

Summary of precursor requirements for all BGCs and the precursor biosynthetic capability of Streptomyces strains. A total of four categories were considered between the precursor producibility and precursor requirement.

Table S7.xlsx:

Metabolites and reactions suggested to be necessary for the biosynthesis of 20 secondary metabolite precursors according to the literature.

Table S8.xlsx:

List of genes predicted to be horizontally transferred among those within BGCs.

models_final_241108.zip:

SBML files of Streptomyces GEMs

 

 
description: This work was supported by National Research Foundation of Korea through the following programs: The Bio & Medical Technology Development Program (RS-2024-00509338); the ERC Center (2022R1A5A1033719); and the Development of next-generation biorefinery platform technologies for leading bio-based chemicals industry project (2022M3J5A1056072); and the Development of platform technologies of microbial cell factories for the next-generation biorefineries project (2022M3J5A1056117). This study was supported by the KAIST Cross-Generation Collaborative Lab project.
DOI: 10.15468/dl.93tzzm
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.8.10_2, COL.8.12_2, COL.8.18_2)",
 "TaxonKey is one of (Mammalia)",
 "Elevation 1490-2200m"
 ]
 }
 ]
}

 The dataset includes 45 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003234-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25375/uct.28668308
title: Detail on items excluded to improve reliability.docx

description: Background: Violence against women (VAW) and violence against children (VAC) interconnect in a variety of important ways. Parenting programmes may offer promise for preventing both forms of violence, through supporting co-parenting as an avenue for reducing inter-parental context, and for engaging men without stigma. This paper will present results from a pilot study with 50 families of the new Co-parenting Sinovuyo Caring Families Programme for Parents and Teens, which took place in rural Manicaland, Zimbabwe. It is a version of the Parenting for Lifelong Health (PLH) Teen programme, adapted to include a more explicit focus on preventing VAW and engagement of fathers for the Zimbabwean context.Methods: A mixed methods embedded intervention design was used to assess changes in VAW and VAC from baseline to endline. Qualitative data included results from advisory board workshops before the pilot, individual interviews with participants at endline, and a focus group with all parenting group facilitators at endline. Quantitative data included assessments at endline and baseline with the primary outcome of intimate partner violence (IPV).Results: This programme led to significant reductions in reported physical IPV, co-parenting struggles, abusive parenting, parenting stress, and teen behaviour problems, but not in emotional IPV, teen-reported IPV, or attitudes to harsh punishment of children. There were significant increases in positive parenting and equitable gender attitudes. These quantitative findings are supported by the qualitative findings with participants and facilitators highlighting improved relationships between themselves and their community, families doing things together and less conflict in the home.Conclusion: This programme is promising for the prevention of VAW and VAC simultaneously.
DOI: 10.25375/uct.28668308.v1
title: Detail on items excluded to improve reliability.docx

description: Background: Violence against women (VAW) and violence against children (VAC) interconnect in a variety of important ways. Parenting programmes may offer promise for preventing both forms of violence, through supporting co-parenting as an avenue for reducing inter-parental context, and for engaging men without stigma. This paper will present results from a pilot study with 50 families of the new Co-parenting Sinovuyo Caring Families Programme for Parents and Teens, which took place in rural Manicaland, Zimbabwe. It is a version of the Parenting for Lifelong Health (PLH) Teen programme, adapted to include a more explicit focus on preventing VAW and engagement of fathers for the Zimbabwean context.Methods: A mixed methods embedded intervention design was used to assess changes in VAW and VAC from baseline to endline. Qualitative data included results from advisory board workshops before the pilot, individual interviews with participants at endline, and a focus group with all parenting group facilitators at endline. Quantitative data included assessments at endline and baseline with the primary outcome of intimate partner violence (IPV).Results: This programme led to significant reductions in reported physical IPV, co-parenting struggles, abusive parenting, parenting stress, and teen behaviour problems, but not in emotional IPV, teen-reported IPV, or attitudes to harsh punishment of children. There were significant increases in positive parenting and equitable gender attitudes. These quantitative findings are supported by the qualitative findings with participants and facilitators highlighting improved relationships between themselves and their community, families doing things together and less conflict in the home.Conclusion: This programme is promising for the prevention of VAW and VAC simultaneously.
DOI: 10.1594/pangaea.972863
title: Grain size analysis of floodplain sediments from NEP 1, NEP 2, and NEP 3 from Nördlingen, southern Germany

description: For grain size distribution of floodplain sediments, sediment samples were first sieved through a 2 mm diameter sieve. Samples less than 2 mm in diameter (10 g) were left overnight in 50 ml of 35 % hydrogen peroxide (H2O2) and heated the next day to remove organic matter. Subsequently, the samples were dispersed using 10 ml of 0.4 N sodium pyrophosphate solution (Na4P2O7) and got ultrasonic treatment for 45 minutes. Grain size analysis was performed for the sand fraction using the dry sieving technique (2000-630 µm: coarse sand, 630-200 µm: medium sand, 200-125 µm: fine sand, 125-63 µm: very fine sand). The finer fractions (63-20 µm: coarse silt, 20-6.3 µm: medium silt, 6.3-2.0 µm: fine silt, 2.0-0.6 µm: coarse clay, 0.6-0.2 µm: medium clay and &lt;0.2 µm: fine clay) were measured by X-ray granulometry (XRG) using a SediGraph III 5120 (Micromeritics). Freely available program GRADISTAT v9.1 was used to calculate D50 (median of grain size), D75/D25 and D75-D25.
DOI: 10.1594/pangaea.973035
title: Luminescence dating of sediment samples from NEP 1 and NEP 3, Nördlingen, southern Germany

description: We established a luminescence based chronology by dating 7 samples collected from profiles NEP 1 and NEP 3. The methods allows to determine the last sunlight exposure of sediment grains (commonly quartz and feldspar). All measurements were conducted in the luminescence laboratory within the Geo-and Environmental research center in Tübingen. We used a so called pIR150 protocol on polyminerals. The results point to various periods of deposition between approximately 1-8 ka.