cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.5527657.v1
title: MouseLight Neuron AA0245

description: A vast neural tracing effort by a team of Janelia scientists has upped the number of fully-traced neurons in the mouse brain by a factor of 10. Researchers can now download and browse the data in three dimensions. <br>Inside the mouse brain, individual neurons zigzag across hemispheres, embroider branching patterns and, researchers have now discovered, can even spool out spindly fibers up to 45 centimeters long.<br>Scientists can see and explore these wandering neural traces in 3-D in the most detailed map of mouse brain wiring yet created. The map reconstructs the shape and position of more than 300 of the 70 million neurons in the mouse brain. Previous efforts to trace the path of individual neurons had topped out in the dozens. <br>The selectively-labeled neurons were mapped in an iterative process with two-photon microscopy. The brain is sliced in 200-micron sections and a few dozen neurons are labeled at a time and imaged. Each brain imaged yields about 50 terabytes of data, each containing mapped neurons which can be browsed via the NeuronBrowser application. Researchers interested in the complete raw data set should contact Janelia to discuss obtaining it via hardware transfer.  <br>
DOI: 10.6084/m9.figshare.19092044.v1
title: Forficula auricularia genome assembly and annotation

description: Genome assembly of Forficula auricularia
DOI: 10.6084/m9.figshare.19550710.v1
title: Supplementary Material for: Understanding children’s attention to dental caries through eye-tracking

description: Visual attention is a significant gateway to a child's mind, and looking is one of the first behaviours young children develop. Untreated caries and the resulting poor dental aesthetics can have adverse emotional and social impacts on children's oral health-related quality of life due to its detrimental effects on self-esteem and self-concept. Therefore, we explored preschool children's eye movement patterns and visual attention to images with and without dental caries via eye movement analysis using hidden Markov models (EMHMM). We calibrated a convenience sample of 157 preschool children to the eye-tracker (Tobii Nano Pro) to ensure standardisation. Consequently, each participant viewed the same standardised pictures with and without dental caries while an eye-tracking device tracked their eye movements. Subsequently, based on the sequence of viewed regions of interest (ROIs), a transition matrix was developed where the participants previously viewed ROI informed their subsequently considered ROI. Hence, an individual's HMM was estimated from their eye movement data using a variational Bayesian approach to determine the optimal number of ROIs automatically. Consequently, this data-driven approach generated the visual task participants' most representative eye movement patterns. Preschool children exhibited two different eye movement patterns, distributed (78%) and selective (21%), which was statistically significant. Children switched between images with more similar probabilities in the distributed pattern while children remained looking at the same ROI than switching to the other ROI in the selective pattern. Nevertheless, all children exhibited an equal starting fixation on the right or left image and noticed teeth. The study findings reveal that most preschool children did not have an attentional bias to images with and without dental caries. Furthermore, only a few children selectively fixated on images with dental caries. Therefore, selective eye-movement patterns may strongly predict preschool children's sustained visual attention to dental caries. Nevertheless, future studies are essential to fully understand the developmental origins of differences in visual attention to common oral health presentations in children. Finally, EMHMM is appropriate for assessing inter-individual differences in children's visual attention.
DOI: 10.6084/m9.figshare.23695755.v1
title: Data-Balinovic.zip

description: Data and scripts of `Collisional broadening within a hadronic transport approach`.
DOI: 10.6084/m9.figshare.24142389.v2
title: Data: Climate change linked to vampire bat expansion and rabies virus spillover. Van de Vuurst, Paige ; Qiao, Huijie; Soler-Tovar, Diego; & Escobar, Luis. Ecography. 10.1111/ecog.06714

description: Data associated with the publication "Climate change linked to vampire bat expansion and rabies virus spillover" by Van de Vuurst, Paige ; Qiao, Huijie; Soler-Tovar, Diego; & Escobar, Luis. Ecography. DOI: 10.1111/ecog.06714. Environmental Data are sourced from the CRU Version 4 dataset: https://www.nature.com/articles/s41597-020-0453-3. These data are the original compressed forms of the raster data used for the associated publication. Occurrence data sourced from: https://doi.org/10.6084/m9.figshare.15025296.v8. Rabies outbreak data sourced from the Regional Information System for the Epidemiological Surveillance of Rabies (SIRVERA): https://sirvera.panaftosa.org.br/.
DOI: 10.6084/m9.figshare.4635121
title: Evaluating the importance of spatio-temporal variability in irrigation inputs for hydrological predictions in irrigated catchments - Datasets

description: Input data used for SWAT model calibration
DOI: 10.6084/m9.figshare.13147625.v1
title: Supplementary Material for: Daily Distance Traveled Is Associated with Greater Brain Size in Primates

description: Explanations for the brain size increments through primate and, particularly, human evolution are numerous. Commonly, these hypotheses rely on the influence that behavioral and ecological variables have on brain size in extant primates, such as diet quality, social group size, or home range (HR) area. However, HR area does not reflect the time spent moving. As such, it has not been properly addressed whether the effort involved in movement could have affected brain size evolution in primates. This study aimed to test the influence of daily movement on primates’ brain sizes, controlling for these other behavioral and ecological factors. We used a large comparative dataset of extant primate species and phylogenetic comparative methods. Our results show a significant correlation between daily movement and brain mass, which is not explained by the influence of diet, social group size, HR, or body mass. Hence, from an evolutionary timescale, a longer daily movement distance is not a constraining factor for the energetic investment in a larger brain. On the contrary, increased mobility could have contributed to brain mass incrementations through evolution.
DOI: 10.6084/m9.figshare.24518290.v2
title: Datasets associated with: Global patterns and environmental drivers of forest functional composition

description: Data required to reproduce analysis, tables, and figures presented in "Global patterns and environmental drivers of forest functional composition".
DOI: 10.6084/m9.figshare.c.3667381_d10.v1
title: Additional file 14: Table S9. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Structural comparison between the EPSPS cassette and A. tuberculatus, and B. vulgaris. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.25367623.v1
title: Supplementary Material for: Motoric cognitive risk syndrome and the risk of incident dementia: A systematic review and meta-analysis of cohort studies

description: Background
Epidemiologic studies have indicated an association of Motoric Cognitive Risk syndrome (MCR), a pre-dementia stage characterized by the presence of cognitive complaints and a slow gait, with increased risk of incident dementia.
Objectives
We aimed to clarify this association using meta-analysis. 
Methods
We systematically searched the PubMed, Embase, and Web of Science databases up to December 2022 for relevant studies that investigated the association between MCR and incident all-cause dementia and Alzheimer’s disease (AD). The random effects model was used to determine a pooled-effect estimate of the association. 
Results
We identified seven articles that corresponded with nine cohort studies investigating the association between MCR and the risk of dementia. Pooled analysis showed that MCR was associated with a significantly increased risk of incident all-cause dementia (HR=2.28; 95% CI: 1.90–2.73) and AD (HR=2.05; 95% CI: 1.61–2.61). Sensitivity analysis showed that there was no evidence that individual studies influenced the pooled-effect estimate, verifying the robustness of the results.
Conclusions
Our results confirm that MCR is an independent risk factor of incident all-cause dementia and AD. Future studies are needed to better understand the mechanisms underlying this association.
DOI: 10.6084/m9.figshare.21618192.v1
title: Supplementary Material for: Morbidity through 3 Years of Age in Children of Women Using Methamphetamine during Pregnancy: A National Registry Study

description: <b><i>Background:</i></b> There is a lack of studies on methamphetamine (MA) exposure and morbidity in children beyond the perinatal period. <b><i>Objectives:</i></b> We compared morbidity in children (0–3 years) with prenatal MA exposure to opioid-exposed and to non-exposed children. <b><i>Methods:</i></b> We used data from a Czech nationwide, registry-based cohort study (2000–2014). Children, who reached 3 years of age, of mothers hospitalized with (i) MA use disorder during pregnancy (MA; <i>n</i> = 194), (ii) opioid use disorder during pregnancy (opioids; <i>n</i> = 166), and (iii) general population (GP; <i>n</i> = 1,294,349) with no recorded history of substance use disorder (SUD). Information on inpatient contacts, length of stay, and diagnoses (International Statistical Classification of Diseases and Related Health Problems 10th Revision [ICD-10]) were assessed. Crude and adjusted odds ratios (aOR), 95% confidence interval (CI) for the risk of hospitalization, and for getting diagnosis from the ICD-10 diagnosis chapters were calculated using binary logistic regression. A stratified analysis on hospitalizations with SUD of mothers was performed. <b><i>Results:</i></b> No significant differences were found in the measures of hospitalization between the MA and opioid groups. Children prenatally exposed to MA and opioids had higher numbers of hospitalizations and diagnoses and longer stays in hospital than children in the GP. Increased risks of certain infectious and parasitic diseases were found in both MA (aOR = 1.6; CI: 1.1–2.3) and opioid (aOR = 1.9; 1.3–2.8) groups as compared to the GP group. The most pronounced difference in stratified analysis on maternal hospitalizations related to SUD after birth was observed for injury, poisoning, and certain other consequences of external causes in the strata of the MA group who had hospitalized mothers (aOR 6.3, 1.6–24.6) compared to the strata without maternal hospitalizations (aOR 1.4, 0.9–2.3). <b><i>Conclusion:</i></b> This study suggests that children born to mothers using MA during pregnancy have similar morbidity during the first 3 years of life but higher than the GP. The excess of risk was primarily due to infections and injuries in the MA group.
DOI: 10.6084/m9.figshare.28267286.v1
title: Randomly selected sentences used in the test for the Intuition-Based Prediction Market and in the Traditional Prediction Market questions

description: Further details about the study are available at the following links:<br>https://osf.io/pcwah<br>https://osf.io/xsb9t<br>On Figshare, the results of each test (Traditional Prediction Market and Intuition-Based Prediction Market) will be published <b>before the outcome</b>. Additionally, the randomly selected sentences will be made public <b>before the start of data collection</b>.
DOI: 10.6084/m9.figshare.749161.v1
title: The Art of Education

description: educational technology
DOI: 10.6084/m9.figshare.27110011.v1
title: Supplementary Material for: Toolkit to Examine Lifelike Language (TELL) v.2.0: Optimizing speech biomarkers of neurodegeneration

description: Introduction: The Toolkit to Examine Lifelike Language (TELL) is a web-based application providing speech biomarkers of neurodegeneration. After deployment of TELL v.1.0 in over 20 sites, we now introduce TELL v.2.0. Methods: First, we describe the app’s usability features, including functions for collecting and processing data onsite, offline, and via videoconference. Second, we summarize its clinical survey, tapping on relevant habits (e.g., smoking, sleep) alongside linguistic predictors of performance (language history, use, proficiency, and difficulties). Third, we detail TELL’s speech-based assessments, each combining strategic tasks and features capturing diagnostically relevant domains (motor function, semantic memory, episodic memory, and emotional processing). Fourth, we specify the app’s new data analysis, visualization, and download options. Finally, we list core challenges and opportunities for development. Results: Overall, through its technical and scientific breakthroughs, TELL v.2.0 offers scalable, objective, and multidimensional insights for the field. Conclusion: This tool can enhance disease detection, phenotyping, and monitoring.
DOI: 10.6084/m9.figshare.c.3641612_d5.v1
title: MOESM2 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 2. Target TLR genomic regions. The coordinates correspond to the Sscrofa10.2 genome assembly. The column “portion without sequence information (bp)” indicates the number of bp that were sequenced to a depth of less than 1000. The column “cds and UTR content” indicates whether that genomic portion correspond to coding sequence or/and to UTR. The column “cause of missing sequence information” indicates the reason for lack of sequence information for the corresponding segment. There are two legends: “missing capture baits” indicate that Agilent capture baits that cover this segment could not be designed; “homologous region in the swine genome” indicates that although the baits were designed and the segment was sequenced, the corresponding sequence reads could not be unambiguously mapped to that region.
DOI: 10.6084/m9.figshare.28075319.v1
title: Database_catena

description: Simulation of observed curves using COMSOL and traditional analytical solutions
DOI: 10.6084/m9.figshare.19947449.v1
title: Supplementary Material for: Circular RNA hsa_circ_0068252 functions in cisplatin resistance and immune response via miR-1304-5p/PD-L1 axis in non-small cell lung cancer

description: Background: Research suggests that circRNAs play important roles in non-small cell lung cancer (NSCLC). The function of hsa_circ_0068252 in NSCLC, especially in cisplatin (DDP) resistance and the mechanisms, was explored in this study. Methods: NSCLC patient samples and two NSCLC cell lines along with corresponding DDP-resistant cell lines were used. Expression levels of circ_0068252 was detected. SiRNA for circ_0068252 and inhibitor for miRNA were used in all functional analysis. A co-culture system of NSCLC cells with CD8+ T cells was used. The cellular location of circ_0068252 was detected and its target miRNA was predicted and verified. Finally, the mechanism responsible for circ_0068252 function on PD-L1 was analyzed using luciferase reporter assay in the two DDP-resistant cell lines, as well as in the co-culture system. The cytotoxicity of T cells was detected by lactate dehydrogenase (LDH) assay. Results: Our findings revealed that high level of circ_0068252 was correlated with poor prognosis of NSCLC and DDP resistance. Knockdown of circ_0068252 could promote the sensitivity of DDP-resistant NSCLC cells to DDP. Moreover, knockdown of circ_0068252 could regulate the immune micro-environment which was mediated via CD8+ T cells. Finally, circ_0068252 could up-regulate PD-L1 expression by adsorbing miR-1304-5p. Conclusion: The circ_0068252/miR-1304-5p/PD-L1 signal axis participates in the regulation of DDP resistance and immune escape of NSCLC cells. Our results suggest that circ_0068252 may be a potential diagnostic marker and therapeutic target for DDP-resistant NSCLC.
DOI: 10.6084/m9.figshare.28151576.v1
title: nhanse.csv

description: A dataset sourced from the Centers for Disease Control, is associated with the Second 360 National Health and Nutrition Examination Survey (NHANES-II). It comprises 10,351 units, representing the entire non-institutionalized civilian population of the United States, including all 50 states and the District of Columbia. This dataset is available at the https://www.stata-press.com/data/r15/svy.html.
DOI: 10.6084/m9.figshare.3817137.v1
title: Data and code for "Aesop's fable experiments demonstrate trial-and-error learning in birds, but no causal understanding"

description: This is a data and code package to replicate the analyses in Ghirlanda and Lind's "Aesop's fable experiments demonstrate trial-and-error learning in birds, but no causal understanding". Please see the README file for details about package content<br>
DOI: 10.6084/m9.figshare.26085829.v1
title: FT ICR_MS_data.pdf

description: FT ICR-MS formula of DOM in the influent and effluents from different electrochemical bioreactors
DOI: 10.6084/m9.figshare.24535018.v1
title: The geography of metacommunities - Code and Data

description: In this study, we used simulation models to demonstrate that a conceptual framework centered on the dependency of species pool characteristics on landscape attributes is valuable for understanding the geography of metacommunity assembly, i.e., understanding variation in the relative importance of mechanisms that assemble different metacommunities distributed along broad-scale ecological gradients or across biogeographic regions. We used empirical data on moth metacommunities in a tropical (data from Maicher et al. 2019) and temperate mountain (Miller and Jones 2005) to provide empirical validation of some of the predictions derived from our simulation models.<br>
DOI: 10.6084/m9.figshare.3083554.v2
title: Wood et al Ecol Appl 2016 Data

description: Data on maize crop yields, soil organic matter fractions, and microbial enzymes from farms in Western Kenya.
DOI: 10.6084/m9.figshare.951967.v3
title: The dataset of six open source Java projects

description: This dataset contains bug reports, commit history, and API descriptions of six open source Java projects including Eclipse Platform UI, SWT, JDT, AspectJ, Birt, and Tomcat. This dataset was used to evaluate a learning to rank approach that recommends relevant files for bug reports.
DOI: 10.6084/m9.figshare.27998051.v2
title: Supplementary Material for: ISPAD Clinical Practice Consensus Guidelines 2024: Diabetes Technologies: Insulin Delivery

description: A SUMMARY OF WHAT IS NEW OR DIFFERENT?

This chapter focuses on insulin pump therapy, with a greater emphasis on glucose-responsive integrated technology that is feasible with the use of automated insulin delivery (AID) systems. The chapter also includes connected insulin pens and insulin pump therapy without AID functionality. As behavioral, psychosocial, and educational considerations of insulin delivery devices are a central part of diabetes self-management and use of insulin delivery devices, these topics are also addressed.

Updates and Changes to previous recommendations include: 
1. Additional details on AID incorporating data from clinical trials complemented by real-world evidence. 
2. Additional focus and details that delineate potential benefits of these systems with new data for youth of all ages, from preschoolers to young adults 
3. New data regarding insulin pump therapy that does not involve AID (non-AID) 
4. An emphasis on approaches to optimize outcomes for all forms of insulin delivery devices, including insulin pump therapy as well as behavioral, psychosocial, and educational considerations for optimizing the daily use of these devices. 
5. A summary of the growing evidence of the technology benefits beyond glycemic outcomes including person-reported outcomes and experience measures and impacts on the quality of life of youth and their caregivers.
DOI: 10.6084/m9.figshare.7851467.v1
title: Metabolic pathways phylogenies / Photosynthesis phylogenies

description: Phylogenetic reconstructions of 30 enzymes for plastid metabolic pathways (isoprenoid, heme, iron-sulfur cluster and fatty acid biosynthesis) and 8 photosynthetic complex subunits as pdf figure (*.tre.pdf) and in newick format (*.tre). Trees were inferred using IQ-TREE, using the best model identified for each alignment separately, node support was calculated using 1000 ultrafast bootstrap (UFBoot) replicates. In the pdf figures: groups are indicated by colored taxon names: green, Viridiplantae; red, rhodophytes; grey, glaucophytes; turquoise, cryptophytes; pink, stramenopiles; dark blue, haptophytes; yellow, dinoflagellates; light green, RSD; orange, chrompodellids/Apicomplexa; brown, Opisthokonta/Amoebozoa/Apusozoa/Ancyromonadida/ciliates; black, prokaryotes. Selected clades are collapsed for increased clarity, see corresponding newick files for full trees. Filenames contain, in that order, the pathway/photosynthetic complex, the query ID, the name of the gene, the e-value used for parsing the BLASTP result (if deviating from the default of ≤1e-25 = 1E25) and the model used for tree reconstruction. See Fig. 2 and Table S2 in the manuscript for overview of the enzymes/subunits.
DOI: 10.6084/m9.figshare.1132676.v1
title: Part 2: Elsevier articles summary files

description: This file contains one XML summary file for each Elsevier article. The XML contains metadata about the article as well as all extracted URIs. As per Elsevier TDM policy, the files can only be re-used for non-commercial purposes.
DOI: 10.6084/m9.figshare.28738190.v20
title: Syllogistic reasoning pdf v1-2-3-4.rar

description: Logic and being
DOI: 10.6084/m9.figshare.21184747.v1
title: Deciphering the drivers of plant-soil feedbacks and their context-dependence: A meta-analysis

description: Data associated with 'Cheng, C., Gundale, M.J., Li, B., Wu, J. 2024. Deciphering the drivers of plant-soil feedbacks and their context-dependence: A meta-analysis. Plant and Soil'
DOI: 10.6084/m9.figshare.16866100.v1
title: SDGs_Urban Equality_CodingGuide.xlsx

description: Coding framework for identifying 'urban' and 'equality' references, and their overlaps, within the 2030 Agenda.
DOI: 10.6084/m9.figshare.28483178.v1
title: Ag-H_structures.zip

description: Convex hull phase diagram of the Ag-H system with respect to fcc-Ag and atomic H set as reference energy at 1 atm.
DOI: 10.6084/m9.figshare.21977045.v1
title: Interspecies interaction reduces selection for antibiotic resistance in Escherichia coli

description: Source data for all the figures in the paper with the same title. The description for all column headers are mentioned in the Read_ME file.
DOI: 10.25909/26778298.v1
title: Raw and derived data: The quantification of downhole fractionation for laser ablation mass spectrometry

description: Two zip files containing data used in the publication "The quantification of downhole fractionation for laser ablation mass spectrometry".The zip file "RawData" contains the original data outputs (CSV files) from the Agilent mass spectometers. These are analyses of existing or potential reference materials for use in laser ablation geochronology.The zip file "DerivedData" contains two CSV files generated by the accompanying Julia code that processes data in preparation for fitting orthogonal polynomials that quantify the dowhnhole fractionation of these analyses and generates the figures for the publication.See also:GeochemistryTools.jl - Julia package for geochemical analysis including the base algorithm for computing the orthogonal polynomial models.Julia scriptsSupplementary analyte signal figures<br>