cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/pr00011481
title: DATA CHALLENGE: An Open Platform to Uncover Associations between Health Systems Indicators and AMR Trajectories

description: Background and Objectives:
While AMR surveillance has advanced significantly in tracking resistance patterns, the key challenge remains translating surveillance data into actionable interventions. Our previous work involved developing model based scorecards to monitor AMR trajectories of countries to identify areas needing interventions. However, this approach lacked understanding the of the underlying socioeconomic and governance determinants driving these trajectories. This could explain why these trajectories were occurring and how can they be modified using strategic interventions.
In this study we propose to 
Develop an integrated platform that overlay’s AMROrbit’s trajectory models with macro-level data on governance, socioeconomic status and public health (SDG indicators, world bank indicators, GBD and WGI)
To identify the determinants behind AMR trends and stimulate what-if interventions that could shift these trajectories using bayesian decision networks and counterfactual analysis

Methods: The surveillance data from the Vivli platform (PFIZER ATLAS + Venus remedies) will be integrated with SDG, World Bank, WGI, and GBD datasets to identify actionable determinants for AMR. We will use Bayseian networks to quantify associations between these macro level indicators and AMR trajectories identified by AMROrbit. Counterfactual analysis will be conducted to model hypothetical scenarios and access the impact of changing the determinant variables.
Proposed Outcome: Our previous work AMROrbit revealed the country trajectories to underscore “what” is happening. Our proposed extension will reveal “why” it may be happening and model “how to change it”. The project aims to inform public health practice through actionable, explainable insights and strengthen stewardship by identifying structural drivers of resistance
Requested Datasets:
ATLAS_Antibiotics
Venus Remedies – PLEA: Study 1, 2 and GSAR
DOI: 10.15468/dl.mxqdgr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enneacampus kaupi (Bleeker, 1863)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((43.7407 -15.8768,43.6816 -15.9401,46.1382 -15.9401,46.1382 -15.1614,46.0559 -15.2167,45.4781 -15.3105,44.725 -15.7042,43.7407 -15.8768))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052011-250525065834625/datasets/export for details.
DOI: 10.15468/dl.sdajb9
title: Occurrence Download

description: A dataset containing 126167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Monarch Watch, eButterfly Surveys, Insect Species Occurrence Data from Multiple Projects Worldwide with Focus on Bees and Wasps in North America)",
 "Geometry POLYGON((-74.26396 40.49124,-74.22393 40.49309,-74.14509 40.51588,-74.10136 40.54174,-74.02191 40.5633,-73.93814 40.53312,-73.74044 40.57624,-73.7546 40.90637,-73.91597 40.91807,-74.01205 40.76902,-74.02622 40.71112,-74.07488 40.65323,-74.11799 40.64214,-74.15187 40.64275,-74.16295 40.65015,-74.19744 40.64522,-74.20668 40.62366,-74.21407 40.56885,-74.24548 40.55222,-74.26396 40.49124))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Hymenoptera, Coleoptera, Dermaptera, Diptera, Ephemeroptera, Hemiptera, Lepidoptera, Neuroptera, Odonata, Orthoptera, Thysanoptera, Trichoptera)",
 "Year 2016-2025"
 ]
}

 The dataset includes 126167 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051986-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyverd
title: Occurrence Download

description: A dataset containing 1215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Anas melleri P.L.Sclater, 1865",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1215 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052014-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6x7r42
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grammatotheca bergiana (Cham.) C.Presl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052013-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mev42s
title: Occurrence Download

description: A dataset listing the 412 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Curculionidae"
 ]
}

 The dataset's 412 records were derived from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051995-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cty4g3
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Ctenodon histrix (Poir.) D.B.O.S.Cardoso, P.L.R.Moraes & H.C.Lima"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052015-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/icpsr39277
title: Testing an Occupational Stress Intervention for Harm Reduction Workers in Substance Misuse Settings, Texas, 2024
title: Archival Version

description: The aim of the study is to conduct semi-structured qualitative focus groups with leaders and workers in harm reduction organizations within Texas, to understand occupational stressors and resilience strategies among this population.
description: The purpose of this study is to understand the stressors and strategies used by harm reduction workers. This feedback is to help inform a future Stress First Aid (SFA) model.
description: Focus groups for Harm Reduction Workers (HRWs) and Harm Reduction Organization (HROs) leaders were utilized to gather feedback about Stress First Aid (SFA) trainings, methods, and recruitment strategies.
description: Questions were focused around five key principles of the SFA model: safety, calm, connect, competence, and confidence. Participants discussed their experiences with and how they practiced self-care regarding each of the SFA principles.
description: Response Rates: Of the 20 programs contacted, 14 responded (70%). The final sample of 16 focus group participants were recruited from this pool of 14 programs. Among these 14
programs, a link to a screening survey was distributed to program leadership
and staff to assess eligibility and find shared availability between prospective participant, of which we received 31 responses. Out of these 31 responses, 19 were eligible, completed demographic forms and were scheduled for
a focus group date (61%). Our final sample of participants for focus groups was N = 16 (84% of respondents who were scheduled).
description: Purposive and snowball sampling design.
description: Datasets: 
DS1: Testing an Occupational Stress Intervention for Harm Reduction Workers in Substance Misuse Settings, Texas, 2024
description: Leaders and workers aged 18 and over, working in harm reduction in Texas with the ability to read and speak in conversational English.
description: mixed modeFor more information about this study, please visit the University of Texas at Austin Addiction Research Institute Workforce Development website.
DOI: 10.3886/icpsr39277.v2
title: Testing an Occupational Stress Intervention for Harm Reduction Workers in Substance Misuse Settings, Texas, 2024
title: Version 2

description: The aim of the study is to conduct semi-structured qualitative focus groups with leaders and workers in harm reduction organizations within Texas, to understand occupational stressors and resilience strategies among this population.
description: The purpose of this study is to understand the stressors and strategies used by harm reduction workers. This feedback is to help inform a future Stress First Aid (SFA) model.
description: Focus groups for Harm Reduction Workers (HRWs) and Harm Reduction Organization (HROs) leaders were utilized to gather feedback about Stress First Aid (SFA) trainings, methods, and recruitment strategies.
description: Questions were focused around five key principles of the SFA model: safety, calm, connect, competence, and confidence. Participants discussed their experiences with and how they practiced self-care regarding each of the SFA principles.
description: Response Rates: Of the 20 programs contacted, 14 responded (70%). The final sample of 16 focus group participants were recruited from this pool of 14 programs. Among these 14
programs, a link to a screening survey was distributed to program leadership
and staff to assess eligibility and find shared availability between prospective participant, of which we received 31 responses. Out of these 31 responses, 19 were eligible, completed demographic forms and were scheduled for
a focus group date (61%). Our final sample of participants for focus groups was N = 16 (84% of respondents who were scheduled).
description: Purposive and snowball sampling design.
description: Datasets: 
DS1: Testing an Occupational Stress Intervention for Harm Reduction Workers in Substance Misuse Settings, Texas, 2024
description: Leaders and workers aged 18 and over, working in harm reduction in Texas with the ability to read and speak in conversational English.
description: mixed modeFor more information about this study, please visit the University of Texas at Austin Addiction Research Institute Workforce Development website.
DOI: 10.15468/dl.928rjy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enneacampus kaupi (Bleeker, 1863)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((45.0245 -12.136,44.6652 -11.6088,43.9782 -11.7142,43.8575 -11.1854,43.5561 -10.9013,42.9255 -11.043,42.7331 -11.7654,43.2052 -12.6542,43.4803 -12.8847,44.5705 -12.8806,44.7256 -13.3177,45.1376 -13.5063,45.5464 -13.3432,45.7456 -13.0171,45.7852 -12.6623,45.638 -12.4031,45.0245 -12.136))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052016-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15684618
title: Haplotype-resolved genome assemblies of Cannabis sativa: Punto Rojo and Cherry Pie

description: These sequences are identical to GenBank JBDLLE000000000 (Punto Rojo) and JBDLLD000000000 (Cherry Pie). 

The sequences are named to comply with the PanSN-spec, i.e., PR:1:chr1 and so on. We use : in place of # to facilitate parsing the GFFs in certain software. 

The three annotation sets include those transferred from cs10 with Liftoff (*-liftoff-wg), predicted resistance genes (*-nlr) and predicted terpene synthases (*-tps).

The code for assembly, annotation, and alignment is contained in three .php files. They are simple text files, with a .php extension to enable the highlighting of comments and variables. 

Questions are best directed towards the GitHub repository: https://github.com/COMInterop/PRCP
DOI: 10.25934/pr00011484
title: Data Challenge: A Statistically-Driven Interactive Dashboard for Geo-Temporal Surveillance and Empirical Antibiotic Guidance

description: Antimicrobial resistance (AMR) surveillance data is often underutilized for real-time clinical and public health decision-making. To bridge this gap, we propose developing an interactive, statistically informed dashboard called AMR Navigator to visualize resistance trends over time and geography and to guide empirical treatment recommendations at the regional level.
Using the ATLAS dataset, which includes over 900,000 global bacterial isolates with detailed metadata across 20 years, our project will model temporal trends in pathogen–drug resistance using linear regression and trend tests. We will apply geospatial comparisons and significance testing to identify regions with persistently high or low resistance levels. These findings will power a recommendation engine that suggests empirical treatment options by pathogen and location, based on statistically significant differences in susceptibility rates.
The dashboard will be built using R’s Shiny framework and will include features such as dynamic filtering (by region, drug, pathogen, and year), interactive time-series plots, resistance heatmaps, and alert zones where resistance has risen rapidly. In addition to visual analytics, the platform will embed statistical summaries such as trend significance and confidence intervals, making the insights both interpretable and actionable.
This project will equip stakeholders, especially in low- and middle-income settings, with timely and evidence-based insights. It is designed to be lightweight, scalable, and clinically relevant, with potential applications in antimicrobial stewardship, policy planning, and outbreak response. This approach will translate resistance data into accessible and evidence-backed guidance, which fills a crucial gap between surveillance and intervention.
DOI: 10.15468/dl.cpjanm
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grammatotheca bergiana (Cham.) C.Presl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052017-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrenf9
title: Occurrence Download

description: A dataset containing 66367 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liriodendron tulipifera L."
 ]
}

 The dataset includes 66367 records from 614 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051997-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15159199
title: TABLE 1 in A new species of marine gobiid fish genus Lubricogobius (Teleostei: Gobiidae) from the Philippines

description: TABLE 1. Fin-rays counts of seven nominal species of Lubricogobius from Indo-Pacific.
Second dorsal raysPectoral rays891011M1617181920MLubricogobius rubrofasciatus n. sp.--1-10.0--2--18.0Lubricogobius dinah--3110.31111-17.5Lubricogobius exiguus33910-9.182218--17.2Lubricogobius nanus--1210.7---6-19.0Lubricogobius orantus2193-9.0--914218.7Lubricogobius tre-1--9.0---1-19.0Lubricogobius tunicatus-1--9.0--2-18.0
PS. Meristic data of congeneric species from review and new species papers from Randall & Senou (2001), Prokofiev (2009), Allen (2015), Allen & Erdmann (2016).
description: Published as part of Chen, I-Shiung, Liao, Yun-Chih, Ho, Lin-Tai & Shao, Kwang-Tsao, 2024, A new species of marine gobiid fish genus Lubricogobius (Teleostei: Gobiidae) from the Philippines, pp. 186 in Zootaxa 5550 (1) on page 186, DOI: 10.11646/zootaxa.5550.1.18, http://zenodo.org/record/14388707
DOI: 10.5281/zenodo.15159203
title: TABLE 1 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 1. China, Henan and Yunnan provinces specimens used for COI based identification, genetic differentiation, and circumscription analyses of two Neoperla species.
SpeciesSexCatalog numberGenBank accessionsGeographic coordinatesN. forcipata1♀G45PP92036927.863ºN, 104.057ºE1♀G46PP92037027.863ºN, 104.057ºE1♀ 1♂G47 G48PP920371 PP92037227.863ºN, 104.057ºE 27.86382ºN, 104.05746ºEN. yiliangensis1♂G49PP92037327.815ºN, 104.359ºE1♂W125PP92037433.6618ºN, 111.8239ºE1♂ 1♀G50 G51PP920375 PP92037627.8266°N, 104.2864°E 27.812ºN, 104.283ºE
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 212 in Zootaxa 5543 (2) on page 212, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924
DOI: 10.5281/zenodo.15159204
title: TABLE 1 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 1. China, Henan and Yunnan provinces specimens used for COI based identification, genetic differentiation, and circumscription analyses of two Neoperla species.
SpeciesSexCatalog numberGenBank accessionsGeographic coordinatesN. forcipata1♀G45PP92036927.863ºN, 104.057ºE1♀G46PP92037027.863ºN, 104.057ºE1♀ 1♂G47 G48PP920371 PP92037227.863ºN, 104.057ºE 27.86382ºN, 104.05746ºEN. yiliangensis1♂G49PP92037327.815ºN, 104.359ºE1♂W125PP92037433.6618ºN, 111.8239ºE1♂ 1♀G50 G51PP920375 PP92037627.8266°N, 104.2864°E 27.812ºN, 104.283ºE
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 212 in Zootaxa 5543 (2) on page 212, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924
DOI: 10.5281/zenodo.15159205
title: TABLE 2 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 2. Genetic distances among sequenced specimens.
G45G46G47G48G49W125G50G51G45G460.000G470.0000.000G480.0000.0000.000G490.0010.0010.0010.001W1250.0150.0150.0150.0150.017G500.2080.2080.2080.2080.2080.203G510.2080.2080.2080.2080.2080.2030.000
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 217 in Zootaxa 5543 (2) on page 217, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924
DOI: 10.5281/zenodo.15159206
title: TABLE 2 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 2. Genetic distances among sequenced specimens.
G45G46G47G48G49W125G50G51G45G460.000G470.0000.000G480.0000.0000.000G490.0010.0010.0010.001W1250.0150.0150.0150.0150.017G500.2080.2080.2080.2080.2080.203G510.2080.2080.2080.2080.2080.2030.000
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 217 in Zootaxa 5543 (2) on page 217, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924
DOI: 10.5281/zenodo.15159207
title: TABLE 3 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 3. Updated checklist of Neoperla diehli -group and N. lushana -group based on Zwick (2023)
Neoperla diehli -groupNo.SpeicesDistribution1N. curvilobata Mo, Wang & Li, 2020China (Guangxi)2N. delphina Li, Mo & Wang, 2020China (Guangxi)3N. diehli Sivec, 1985China (Hainan, Indonesia)
......continued on the next page
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 219 in Zootaxa 5543 (2) on page 219, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924
DOI: 10.5281/zenodo.15159208
title: TABLE 3 in One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China

description: TABLE 3. Updated checklist of Neoperla diehli -group and N. lushana -group based on Zwick (2023)
Neoperla diehli -groupNo.SpeicesDistribution1N. curvilobata Mo, Wang & Li, 2020China (Guangxi)2N. delphina Li, Mo & Wang, 2020China (Guangxi)3N. diehli Sivec, 1985China (Hainan, Indonesia)
......continued on the next page
description: Published as part of Mo, Raorao, Li, Weihai & Murányi, Dávid, 2024, One new species and one new provincial record of Neoperla (Plecoptera: Perlidae) from Yunnan, China, pp. 219 in Zootaxa 5543 (2) on page 219, DOI: 10.11646/zootaxa.5543.2.3, http://zenodo.org/record/14385924