cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27861380.v1
title: Additional file 1 of Endophthalmitis patients in Makassar City: molecular identification of pathogenic fungal profile

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861381
title: Additional file 1 of Long-term survival of asexual Zymoseptoria tritici spores in the environment

description: Additional file 1: Fig. S1 A As Fig. 1, percentage viable blastospores (spores with at least one live cell; assessed by live/dead staining with propidium iodide (PI)) over time in water; B, C examples of cells sampled and stained with PI after B 5 days in water or C 49 days in water. Yellow arrowheads indicate exemplar dead cells, flooded with PI stain. Green arrowheads indicate exemplar live cells, with staining at plasma membrane only. Red arrowheads indicate matter from dead, lysed cells. Fig. S2 As Fig. 1D, average number of cells per individual blastospore over time in water; B As Fig. 1C, example of cells sampled and stained with PI after 5 days in water; C exemplar blastospores stained with PI after 5 days in water; D exemplar blastospores stained with PI after 42 days in water. Note the reduction in cells per individual blastospore between B/C and D. Arrows in B indicate possible reasons for this change: yellow arrows indicate bud formation, which would initially produce one-cell blastospores (buds); white arrows indicate cells in the middle of a blastospore (i.e. non-terminal cells) which have died, potentially leading to splitting of the blastospore into two smaller individual blastospores. Fig. S3 Z. tritici cells survive at least 56 days after aqueous suspensions are allowed to dry. An example plate is shown bearing colonies of Z. tritici which arose after cells were suspended in water, and then suspensions allowed to dry completely on a sterile Petri dish surface before sealing the Petri dish for 56 days. Dried cells were then resuspended in water and an aliquot pipetted onto YPD agar and incubated at 18°C for 7 days. Colonies are clearly visible. Raw data underpinning each figure; raw gene expression data.
DOI: 10.6084/m9.figshare.27861384.v1
title: Additional file 2 of Long-term survival of asexual Zymoseptoria tritici spores in the environment

description: Additional file 2: Tables S1–S15. Table S1 Top ten genes uniquely upregulated at 1 h; Table S2 Metabolic pathways enriched among genes uniquely upregulated at 1 h; Table S3 Top ten all genes upregulated at 1 h; Table S4 Metabolic pathways enriched among genes upregulated at 1 h; Table S5 Top ten genes uniquely upregulated at 7 days; Table S6 PFAM analysis 7 days; Table S7 Transcription factors upregulated at 7 days; Table S8 Top ten genes uniquely downregulated at 1 h; Table S9 Transcription factors among genes uniquely downregulated at 1 h; Table S10 Metabolic pathways enriched among genes uniquely downregulated at 1 h; Table S11 Top ten all genes downregulated at 1 h; Table S12 Transcription factors among all genes downregulated at 1 h; Table S13 Metabolic pathways enriched among all genes downregulated at 1 h; Table S14 Transcription factors among genes downregulated at 7 days; Table S15 Metabolic pathways enriched among genes downregulated at 7 days.
DOI: 10.6084/m9.figshare.27861381.v1
title: Additional file 1 of Long-term survival of asexual Zymoseptoria tritici spores in the environment

description: Additional file 1: Fig. S1 A As Fig. 1, percentage viable blastospores (spores with at least one live cell; assessed by live/dead staining with propidium iodide (PI)) over time in water; B, C examples of cells sampled and stained with PI after B 5 days in water or C 49 days in water. Yellow arrowheads indicate exemplar dead cells, flooded with PI stain. Green arrowheads indicate exemplar live cells, with staining at plasma membrane only. Red arrowheads indicate matter from dead, lysed cells. Fig. S2 As Fig. 1D, average number of cells per individual blastospore over time in water; B As Fig. 1C, example of cells sampled and stained with PI after 5 days in water; C exemplar blastospores stained with PI after 5 days in water; D exemplar blastospores stained with PI after 42 days in water. Note the reduction in cells per individual blastospore between B/C and D. Arrows in B indicate possible reasons for this change: yellow arrows indicate bud formation, which would initially produce one-cell blastospores (buds); white arrows indicate cells in the middle of a blastospore (i.e. non-terminal cells) which have died, potentially leading to splitting of the blastospore into two smaller individual blastospores. Fig. S3 Z. tritici cells survive at least 56 days after aqueous suspensions are allowed to dry. An example plate is shown bearing colonies of Z. tritici which arose after cells were suspended in water, and then suspensions allowed to dry completely on a sterile Petri dish surface before sealing the Petri dish for 56 days. Dried cells were then resuspended in water and an aliquot pipetted onto YPD agar and incubated at 18°C for 7 days. Colonies are clearly visible. Raw data underpinning each figure; raw gene expression data.
DOI: 10.6084/m9.figshare.27861384
title: Additional file 2 of Long-term survival of asexual Zymoseptoria tritici spores in the environment

description: Additional file 2: Tables S1–S15. Table S1 Top ten genes uniquely upregulated at 1 h; Table S2 Metabolic pathways enriched among genes uniquely upregulated at 1 h; Table S3 Top ten all genes upregulated at 1 h; Table S4 Metabolic pathways enriched among genes upregulated at 1 h; Table S5 Top ten genes uniquely upregulated at 7 days; Table S6 PFAM analysis 7 days; Table S7 Transcription factors upregulated at 7 days; Table S8 Top ten genes uniquely downregulated at 1 h; Table S9 Transcription factors among genes uniquely downregulated at 1 h; Table S10 Metabolic pathways enriched among genes uniquely downregulated at 1 h; Table S11 Top ten all genes downregulated at 1 h; Table S12 Transcription factors among all genes downregulated at 1 h; Table S13 Metabolic pathways enriched among all genes downregulated at 1 h; Table S14 Transcription factors among genes downregulated at 7 days; Table S15 Metabolic pathways enriched among genes downregulated at 7 days.
DOI: 10.6084/m9.figshare.27861386
title: Additional file 1 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861386.v1
title: Additional file 1 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861389
title: Additional file 2 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27861389.v1
title: Additional file 2 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27861392
title: Additional file 3 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27861392.v1
title: Additional file 3 of Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27861396.v1
title: Additional file 1 of Arachidonic acid impairs natural killer cell functions by disrupting signaling pathways driven by activating receptors and reactive oxygen species

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861396
title: Additional file 1 of Arachidonic acid impairs natural killer cell functions by disrupting signaling pathways driven by activating receptors and reactive oxygen species

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861413
title: Additional file 1 of The use of contracts to implement and manage healthy vending: best practice recommendations for effective and sustained interventions

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.27861413.v1
title: Additional file 1 of The use of contracts to implement and manage healthy vending: best practice recommendations for effective and sustained interventions

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.27861414
title: Additional file 1 of Diversity and prevalence of Leucocytozoon in black flies (Diptera: Simuliidae) of Thailand

description: Additional file 1: Table S1. Number of each Leucocytozoon lineage detected in black flies from each collection site.
DOI: 10.6084/m9.figshare.27861414.v1
title: Additional file 1 of Diversity and prevalence of Leucocytozoon in black flies (Diptera: Simuliidae) of Thailand

description: Additional file 1: Table S1. Number of each Leucocytozoon lineage detected in black flies from each collection site.
DOI: 10.6084/m9.figshare.27861422
title: Additional file 1 of Single-strain probiotics enhance growth, anti-pathogen immunity, and resistance to Nocardia seriolae in grey mullet (Mugil cephalus) via gut microbiota modulation

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861422.v1
title: Additional file 1 of Single-strain probiotics enhance growth, anti-pathogen immunity, and resistance to Nocardia seriolae in grey mullet (Mugil cephalus) via gut microbiota modulation

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27861428.v1
title: Additional file 2 of Single-strain probiotics enhance growth, anti-pathogen immunity, and resistance to Nocardia seriolae in grey mullet (Mugil cephalus) via gut microbiota modulation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27861428
title: Additional file 2 of Single-strain probiotics enhance growth, anti-pathogen immunity, and resistance to Nocardia seriolae in grey mullet (Mugil cephalus) via gut microbiota modulation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27157928
title: Additional file 3 of Whole-genome sequencing of non-typeable Haemophilus influenzae isolated from a tertiary care hospital in Surabaya, Indonesia

description: Additional file 3. Virulence factors presence-absence of 10 non-typeable Haemophilus influenzae.
DOI: 10.6084/m9.figshare.27157925
title: Additional file 2 of Whole-genome sequencing of non-typeable Haemophilus influenzae isolated from a tertiary care hospital in Surabaya, Indonesia

description: Additional file 2. Global dataset metadata.
DOI: 10.6084/m9.figshare.27861462
title: Additional file 6 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 6.
DOI: 10.6084/m9.figshare.27861462.v1
title: Additional file 6 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 6.
DOI: 10.6084/m9.figshare.27861465
title: Additional file 7 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 7.
DOI: 10.6084/m9.figshare.27861465.v1
title: Additional file 7 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 7.
DOI: 10.6084/m9.figshare.27861468
title: Additional file 8 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 8.
DOI: 10.6084/m9.figshare.27861468.v1
title: Additional file 8 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 8.
DOI: 10.6084/m9.figshare.27861471
title: Additional file 9 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 9.
DOI: 10.6084/m9.figshare.27861471.v1
title: Additional file 9 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 9.
DOI: 10.6084/m9.figshare.27861474.v1
title: Additional file 10 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 10.
DOI: 10.6084/m9.figshare.27861477
title: Additional file 11 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 11.
DOI: 10.6084/m9.figshare.27861474
title: Additional file 10 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 10.
DOI: 10.6084/m9.figshare.27861477.v1
title: Additional file 11 of Metabolomics and proteomics analyses of Chrysanthemi Flos: a mechanism study of changes in proteins and metabolites by processing methods

description: Additional file 11.
DOI: 10.15468/dl.7w5jfq
title: Occurrence Download

description: A dataset containing 2985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asphodeline lutea (L.) Rchb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 2985 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023190-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14190524
title: Long-term stability of dental arch widths after extraction and non-extraction orthodontic treatment: a retrospective cohort study

description: Dataset for all analyses. Initially, access will be granted to the editor and the peer reviewers. After acceptance, unrestricted access will be granted to everyone.
DOI: 10.5281/zenodo.14190525
title: Long-term stability of dental arch widths after extraction and non-extraction orthodontic treatment: a retrospective cohort study

description: Dataset for all analyses. Initially, access will be granted to the editor and the peer reviewers. After acceptance, unrestricted access will be granted to everyone.
DOI: 10.5281/zenodo.14190467
title: Microscopic pairing in fission dynamics

description: Related to the work "Microscopic pairing in fission dynamics" by: A. Zdeb, M. Warda, L.M. Robledo, A. Baran

There are 11 directories, each of them contains the collection of data of the studied dynamically isotopes: 262Rf,242Fm, 244Fm, 246Fm, 248Fm, 250Fm, 252Fm, 254Fm, 256Fm, 258Fm, 260Fm. Inside of each directory devoted to a specific isotope, one can find 2 sub-directories related to the dynamic calculations with delta and delta n square dynamic coordinates:

- The pes.txt text files contain the results of the HFB calculations with the constraints on the q_20 and one of the mentioned above dynamic coordinate. 

- The minpaths text file contains the results of the least-action paths for all existing exit points of each isotope on the corresponding 2-dimensional potential energy surface.

- The inp1.txt text file contains the q_20, one of the considered dynamic coordinate, related to them and a relative (to the ground state) energy and the collective inertias tensor elements as described in the header of the file.

The research work of A.Z. and M.W. is a part of the project No.2021/43/P/ST2/03036 co-funded by the National Science Centre and the European Union Framework Programme for Research and Innovation Horizon 2020 under the Marie Skłodowska-Curie grant agreement no. 945339.
DOI: 10.6084/m9.figshare.25907827
title: Excel data

description: Raw data of the MS
DOI: 10.6084/m9.figshare.25907827.v1
title: Excel data

description: Raw data of the MS
DOI: 10.6084/m9.figshare.26936446
title: Open ultrawidefield fundus image dataset with disease diagnosis and clinical image quality assessment

description: This dataset consisted of 700 high-resolution UWF images from 602 patients and corresponding clinical information from six common fundus diseases and healthy volunteers. The image quality is annotated by three ophthalmologists based on the field of view, illumination, artifact, contrast, and overall quality. We believe this dataset could contribute to the development of automatic image quality assessment for UWF images in clinical practice.
DOI: 10.6084/m9.figshare.26936446.v1
title: Open ultrawidefield fundus image dataset with disease diagnosis and clinical image quality assessment

description: This dataset consisted of 700 high-resolution UWF images from 602 patients and corresponding clinical information from six common fundus diseases and healthy volunteers. The image quality is annotated by three ophthalmologists based on the field of view, illumination, artifact, contrast, and overall quality. We believe this dataset could contribute to the development of automatic image quality assessment for UWF images in clinical practice.
DOI: 10.6084/m9.figshare.26932366
title: Control of spatio-temporal patterning via cell growth in a multicellular synthetic gene circuit

description: Source data for the graphs and plots shown in the main and supplementary figures of the related manuscript
DOI: 10.6084/m9.figshare.26932366.v1
title: Control of spatio-temporal patterning via cell growth in a multicellular synthetic gene circuit

description: Source data for the graphs and plots shown in the main and supplementary figures of the related manuscript
DOI: 10.6084/m9.figshare.27861120
title: Research Data-Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis

description: Research Data of Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis, <b>contributing to </b><b>Catena</b>.
DOI: 10.6084/m9.figshare.27861120.v2
title: Research Data-Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis

description: Research Data of Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis, <b>contributing to </b><b>Catena</b>.
DOI: 10.6084/m9.figshare.27861120.v1
title: Research Data-Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis

description: Research Data of Photographic 3D Reconstruction and 3D Printing of Moso Bamboo Root System Precision Assessment and Mechanical Analysis, <b>contributing to </b><b>Catena</b>.
DOI: 10.15468/dl.xu5pp8
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Monochoria korsakowii Regel & Maack"
 ]
}

 The dataset includes 138 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023191-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8vy4r
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atriplex mollis Desf., Atriplex mollis Uspenski, 1834, Atriplex morrisii R.H.Anderson)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023192-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25468189
title: Reshaping the discovery of self-assembling peptides with generative AI guided by hybrid deep learning

description: Manually curated dataset comprising 368 peptides with validated assembly status, labelled as self-assembling (SA; 249) and non-assembling (NSA; 119), complemented with literature source for each entry.
DOI: 10.6084/m9.figshare.25468189.v1
title: Reshaping the discovery of self-assembling peptides with generative AI guided by hybrid deep learning

description: Manually curated dataset comprising 368 peptides with validated assembly status, labelled as self-assembling (SA; 249) and non-assembling (NSA; 119), complemented with literature source for each entry.
DOI: 10.15468/dl.4j867m
title: Occurrence Download

description: A dataset containing 14514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is one of (France, Switzerland, Norway, Italy, Germany, Poland, Spain, Portugal, Belgium, Ireland, United Kingdom of Great Britain and Northern Ireland, Netherlands, Sweden, Finland, Estonia, Latvia, Lithuania, Austria, Greece, Albania, North Macedonia, Denmark, Croatia, Montenegro, Bulgaria, Romania, Serbia, Slovenia, Slovakia, Czechia, Hungary, Luxembourg, Liechtenstein, Andorra)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "Year 2012-2022"
 ]
}

 The dataset includes 14514 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023193-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytgvzz
title: Occurrence Download

description: A dataset listing the 23151 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((24.75199 22.20294,37.26299 21.72406,34.61488 31.50896,24.666 31.58394,24.75199 22.20294))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 23151 records were derived from 682 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023182-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.