cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24038715
title: Additional file 2 of A gene mutation-based risk model for prognostic prediction in liver metastases

description: Additional file 2: Table S1. The clinical data for each sample used in the training cohort. Table S2. The clinical data for each sample used in the validation cohort. Table S3. The clinical data for each sample used in the primary liver cancer cohort. Table S4. Gene list for FUSCC. Table S5. The clinical data for breast cancer liver metastases in the cohort of Pleasance et al. Table S6. Gene list for MSKCC. Table S7. Immune-related signatures used in the study. Table S8. The multivariate Cox regression analysis of gene mutations in patients with liver metastasis. Table S9. Functional enrichment analysis of differential expressed genes between the high- and low-risk group in the transcriptomic cohort.
DOI: 10.6084/m9.figshare.24038715.v1
title: Additional file 2 of A gene mutation-based risk model for prognostic prediction in liver metastases

description: Additional file 2: Table S1. The clinical data for each sample used in the training cohort. Table S2. The clinical data for each sample used in the validation cohort. Table S3. The clinical data for each sample used in the primary liver cancer cohort. Table S4. Gene list for FUSCC. Table S5. The clinical data for breast cancer liver metastases in the cohort of Pleasance et al. Table S6. Gene list for MSKCC. Table S7. Immune-related signatures used in the study. Table S8. The multivariate Cox regression analysis of gene mutations in patients with liver metastasis. Table S9. Functional enrichment analysis of differential expressed genes between the high- and low-risk group in the transcriptomic cohort.
DOI: 10.6084/m9.figshare.24038707
title: Additional file 3 of Mitophagy-related long non-coding RNA signature predicts prognosis and drug response in Ovarian Cancer

description: Additional file 3: Figure S1. The network diagram of the 331 selected lncRNAs and 28 mitophagy-related genes.
DOI: 10.6084/m9.figshare.24038707.v1
title: Additional file 3 of Mitophagy-related long non-coding RNA signature predicts prognosis and drug response in Ovarian Cancer

description: Additional file 3: Figure S1. The network diagram of the 331 selected lncRNAs and 28 mitophagy-related genes.
DOI: 10.6084/m9.figshare.24038710
title: Additional file 4 of Mitophagy-related long non-coding RNA signature predicts prognosis and drug response in Ovarian Cancer

description: Additional file 4: Figure S2. 22 anti-tumor drugs with a higher IC50 in the low-risk group.
DOI: 10.6084/m9.figshare.24038710.v1
title: Additional file 4 of Mitophagy-related long non-coding RNA signature predicts prognosis and drug response in Ovarian Cancer

description: Additional file 4: Figure S2. 22 anti-tumor drugs with a higher IC50 in the low-risk group.
DOI: 10.6084/m9.figshare.26627584.v1
title: Additional file 5 of KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites

description: Additional file 5: Performance comparison of KDeep against other RBP-site predictors on the RBP-31 dataset. The evaluation includes DeepRKE-, DeepRKE+, GraphProt, iDeepV, DeepBind, iONMF, and iDeepS.
DOI: 10.6084/m9.figshare.26627401
title: Additional file 1 of The evolution and mutational robustness of chromatin accessibility in Drosophila

description: Additional file 1. Sequencing library statistics.
DOI: 10.6084/m9.figshare.24040748
title: Additional file 2 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 1. Description of oat varieties and raw phenotypic data collected in this study.
DOI: 10.6084/m9.figshare.24040748.v1
title: Additional file 2 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 1. Description of oat varieties and raw phenotypic data collected in this study.
DOI: 10.6084/m9.figshare.24040751
title: Additional file 3 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 2. Summary of flowering time, plant height, and the number of plants with a single seed phenotypic data
DOI: 10.6084/m9.figshare.24040751.v1
title: Additional file 3 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 2. Summary of flowering time, plant height, and the number of plants with a single seed phenotypic data
DOI: 10.6084/m9.figshare.24040754
title: Additional file 4 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 3. Analysis of variance table of log-transformed flowering time, plant height, and the number of plants with a single seed
DOI: 10.6084/m9.figshare.24040754.v1
title: Additional file 4 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 3. Analysis of variance table of log-transformed flowering time, plant height, and the number of plants with a single seed
DOI: 10.6084/m9.figshare.24040757
title: Additional file 5 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 4. Percentage of plants with 1, 2, 3, or &gt; 4 seeds when grown at 16 or 22 h. of light treatment in soil, or sand media
DOI: 10.6084/m9.figshare.24040757.v1
title: Additional file 5 of ‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)

description: Supplemental Table 4. Percentage of plants with 1, 2, 3, or &gt; 4 seeds when grown at 16 or 22 h. of light treatment in soil, or sand media
DOI: 10.48677/b1d8c46b-8c65-447c-9a1d-f8828ecfa518
title: Verwaltungsgrenzen (VGD) BEV 1:50 000 Stichtag 01.10.2017

description: Die Verwaltungsgrenzen Stichtag BEV beinhalten die Grenzen der Verwaltungseinheiten Österreichs im Schnittstellenschema des BEV.

Die Daten sind für folgende Grenzen vorhanden: 
1) Katastralgemeindegrenze 
2) Gemeindegrenze 
3) Bezirksgrenze 
4) Gerichtsbezirksgrenze 
5) Vermessungssprengelgrenze 
6) Finanzamtsbereichsgrenze
7) Bundesländergrenze 
8) Staatsgrenze

Stichtag = Erstellungsdatum:
Die Daten sind zu diesem Tag der aktuellste Datenbestand des BEV.
Dies ist nicht ident mit dem Aufnahme- bzw. Vermessungsdatum.
DOI: 10.6084/m9.figshare.24040657
title: Additional file 2 of Tuning transcription factor DegU for developing extracellular protease overproducer in Bacillus pumilus

description: Supplementary Material 2. Additional file 2. Table S1. The differentially expressed genes in B. pumilus SCU11 ∆hpr relative to SCU11 ∆hpr∆degU (24 h); Table S2. The differentially expressed genes in B. pumilus 62 A relative to SCU11 ∆hpr∆degU (24 h); Table S3. The differentially expressed genes clusters between DegU(WT) and DegU(L113F) (24 h); Table S4. The up-regulated genes in 62 A relative to ∆hpr (12 h); Table S5. The up-regulated genes in 62 A relative to ∆hpr (24 h); Table S6. The up-regulated genes in 62 A relative to ∆hpr (36 h); Table S7. The down-regulated genes in 62 A relative to ∆hpr (12 h); Table S8. The down-regulated genes in 62 A relative to ∆hpr (24 h); Table S9. The down-regulated genes in 62 A relative to ∆hpr (36 h); Table S10. The enrichment pathways of the differentially expressed genes by KEGG analysis in 62 A relative to ∆hpr (12 h); Table S11. List of major primers used in the article.
DOI: 10.6084/m9.figshare.24040657.v1
title: Additional file 2 of Tuning transcription factor DegU for developing extracellular protease overproducer in Bacillus pumilus

description: Supplementary Material 2. Additional file 2. Table S1. The differentially expressed genes in B. pumilus SCU11 ∆hpr relative to SCU11 ∆hpr∆degU (24 h); Table S2. The differentially expressed genes in B. pumilus 62 A relative to SCU11 ∆hpr∆degU (24 h); Table S3. The differentially expressed genes clusters between DegU(WT) and DegU(L113F) (24 h); Table S4. The up-regulated genes in 62 A relative to ∆hpr (12 h); Table S5. The up-regulated genes in 62 A relative to ∆hpr (24 h); Table S6. The up-regulated genes in 62 A relative to ∆hpr (36 h); Table S7. The down-regulated genes in 62 A relative to ∆hpr (12 h); Table S8. The down-regulated genes in 62 A relative to ∆hpr (24 h); Table S9. The down-regulated genes in 62 A relative to ∆hpr (36 h); Table S10. The enrichment pathways of the differentially expressed genes by KEGG analysis in 62 A relative to ∆hpr (12 h); Table S11. List of major primers used in the article.
DOI: 10.6084/m9.figshare.26627446.v1
title: Additional file 2 of Maternal adverse childhood experiences (ACEs) and DNA methylation of newborns in cord blood

description: Additional file 2: Table S1. Lookup of Moore et al. results including top CpG located in each correlated methylated region (p &lt; 0.005) and individual CpGs (p &lt; 0.0005), and EWAS results from the current study. Table S2. Lookup of Kotsakis Ruehlmann et al. results including CpGs associated with prenatal cumulative stress or individual stress domains in PACE (p value  &lt;  2.4  ×  10−7), and EWAS results from the current study.
DOI: 10.6084/m9.figshare.24040718
title: Additional file 1 of Evaluation of calcification distribution by CT-based textural analysis for discrimination of immature teratoma

description: Additional file 1: Table 1. Differential diagnosis between mature and immature teratoma according to maximum diameter or numbers of calcifications or fat in tumors. Table 2. Comparison of CT features of calcifications between mature and immature teratoma. Table 3. Comparison of CT features of fats between mature and immature teratoma. Table 4. Comparison of other CT features of calcifications between mature and immature teratoma. Table 5. Comparison of other CT features of fats between mature and immature teratoma.
DOI: 10.6084/m9.figshare.24040718.v1
title: Additional file 1 of Evaluation of calcification distribution by CT-based textural analysis for discrimination of immature teratoma

description: Additional file 1: Table 1. Differential diagnosis between mature and immature teratoma according to maximum diameter or numbers of calcifications or fat in tumors. Table 2. Comparison of CT features of calcifications between mature and immature teratoma. Table 3. Comparison of CT features of fats between mature and immature teratoma. Table 4. Comparison of other CT features of calcifications between mature and immature teratoma. Table 5. Comparison of other CT features of fats between mature and immature teratoma.
DOI: 10.48677/e267c866-c3e8-45f6-b519-4bfad42173dc
title: Verwaltungsgrenzen (VGD) BEV 1:250 000 Stichtag 01.10.2017

description: Die Verwaltungsgrenzen Stichtag BEV beinhalten die Grenzen der Verwaltungseinheiten Österreichs im Schnittstellenschema des BEV.

Die Daten sind für folgende Grenzen vorhanden: 
1) Katastralgemeindegrenze 
2) Gemeindegrenze 
3) Bezirksgrenze 
4) Gerichtsbezirksgrenze 
5) Vermessungssprengelgrenze 
6) Finanzamtsbereichsgrenze
7) Bundesländergrenze 
8) Staatsgrenze

Stichtag = Erstellungsdatum:
Die Daten sind zu diesem Tag der aktuellste Datenbestand des BEV.
Dies ist nicht ident mit dem Aufnahme- bzw. Vermessungsdatum.
DOI: 10.6084/m9.figshare.24329912.v1
title: Additional file 2 of Recommendations for the classification of germline variants in the exonuclease domain of POLE and POLD1

description: Additional file 2: Table S2. Location of POLE and POLD1 amino acids in the 3D structure and their accessibility to the DNA.
DOI: 10.15468/dl.evcnsh
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Bhutan, Myanmar, India, Viet Nam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron edgeworthii Hook.fil."
 ]
}

 The dataset includes 243 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069788-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu3393
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((146.902995 -33.840231, 146.902995 -33.844723, 146.905241 -33.844723, 146.905241 -33.840231, 146.902995 -33.840231)), ((146.905241 -33.844723, 146.905241 -33.846969, 146.909732 -33.846969, 146.909732 -33.844723, 146.905241 -33.844723)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069789-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26627959.v1
title: Additional file 1 of Differential expression of zinc finger CCHC-type superfamily proteins in thyroid carcinoma and their associations with tumor immunity

description: Supplementary Material 1: Table S1. Primers and their sequences used in the quantitative real-time PCR of ZCCHC gene families
DOI: 10.6084/m9.figshare.26627986.v1
title: Additional file 10 of Differential expression of zinc finger CCHC-type superfamily proteins in thyroid carcinoma and their associations with tumor immunity

description: Supplementary Material 10: Table S10. Raw data of RT-PCR
DOI: 10.6084/m9.figshare.24046239
title: Additional file 2 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 2: Table S1. Proteins captured by CHS-MS.
DOI: 10.6084/m9.figshare.24046239.v1
title: Additional file 2 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 2: Table S1. Proteins captured by CHS-MS.
DOI: 10.6084/m9.figshare.24046242
title: Additional file 3 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 3: Table S2. List of matched GO terms of all proteins captured by IB and 1,6-HD treatment.
DOI: 10.6084/m9.figshare.24046242.v1
title: Additional file 3 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 3: Table S2. List of matched GO terms of all proteins captured by IB and 1,6-HD treatment.
DOI: 10.6084/m9.figshare.24046254
title: Additional file 7 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 7: Table S3. Representative proteins captured by different gradients of 1,6-HD treatment.
DOI: 10.6084/m9.figshare.24046254.v1
title: Additional file 7 of Investigating phase separation properties of chromatin-associated proteins using gradient elution of 1,6-hexanediol

description: Additional file 7: Table S3. Representative proteins captured by different gradients of 1,6-HD treatment.
DOI: 10.5517/ccs0sl4
title: CCDC 715746: Experimental Crystal Structure Determination

description: Related Article: T.Mahenthirarajah, Yang Li, P.Lightfoot|2009|Dalton Trans.||3280|doi:10.1039/b900356h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0sm5
title: CCDC 715747: Experimental Crystal Structure Determination

description: Related Article: T.Mahenthirarajah, Yang Li, P.Lightfoot|2009|Dalton Trans.||3280|doi:10.1039/b900356h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0sn6
title: CCDC 715748: Experimental Crystal Structure Determination

description: Related Article: T.Mahenthirarajah, Yang Li, P.Lightfoot|2009|Dalton Trans.||3280|doi:10.1039/b900356h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrrbld
title: CCDC 707624: Experimental Crystal Structure Determination

description: Related Article: Yan Feng, Sai-Feng Xue, Zhi-Fang Fan, Yun-Qian Zhang, Qian-Jiang Zhu, Zhu Tao|2009|J.Inclusion Phenom.Macrocyclic Chem.|64|121|doi:10.1007/s10847-009-9544-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrrbmf
title: CCDC 707625: Experimental Crystal Structure Determination

description: Related Article: Yan Feng, Sai-Feng Xue, Zhi-Fang Fan, Yun-Qian Zhang, Qian-Jiang Zhu, Zhu Tao|2009|J.Inclusion Phenom.Macrocyclic Chem.|64|121|doi:10.1007/s10847-009-9544-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqw41r
title: CCDC 681474: Experimental Crystal Structure Determination

description: Related Article: Bukuo Ni, Qianying Zhang, S.Garre, A.D.Headley|2009|Adv.Synth.Catal.|351|875|doi:10.1002/adsc.200800808
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrdqys
title: CCDC 697436: Experimental Crystal Structure Determination

description: Related Article: B.B.Koleva, T.Kolev, M.Spiteller, H.Mayer-Figge, W.S.Sheldrick|2009|J.Inclusion Phenom.Macrocyclic Chem.|64|173|doi:10.1007/s10847-009-9551-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0ywl
title: CCDC 715910: Experimental Crystal Structure Determination

description: Related Article: H.Andersson, M.Gustafsson, D.Bostrom, R.Olsson, F.Almqvist|2009|Angew.Chem.,Int.Ed.|48|3288|doi:10.1002/anie.200900189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0yvk
title: CCDC 715909: Experimental Crystal Structure Determination

description: Related Article: H.Andersson, M.Gustafsson, D.Bostrom, R.Olsson, F.Almqvist|2009|Angew.Chem.,Int.Ed.|48|3288|doi:10.1002/anie.200900189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqqsv1
title: CCDC 677314: Experimental Crystal Structure Determination

description: Related Article: M.Itazaki, K.Ueda, H.Nakazawa|2009|Angew.Chem.,Int.Ed.|48|3313|doi:10.1002/anie.200805112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqqsw2
title: CCDC 677315: Experimental Crystal Structure Determination

description: Related Article: M.Itazaki, K.Ueda, H.Nakazawa|2009|Angew.Chem.,Int.Ed.|48|3313|doi:10.1002/anie.200805112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.32242.02245
title: DAULAT GIREY THE CRIMEAN TARTAR KHAN REAL HERO OF STANILATSY WHILE OTTOMAN COMMANDER HAD LOST HIS NERVE
DOI: 10.13140/rg.2.2.35178.03522
title: OTTOMANS DEFEAT THEIR DUMBEST RUSSIAN ENEMY IN HISTORY IN TIME AND SPACE
DOI: 10.5517/ccqhzjp
title: CCDC 670763: Experimental Crystal Structure Determination

description: Related Article: P.Albores, L.M.Carrella, W.Clegg, P.Garcia-Alvarez, A.R.Kennedy, J.Klett, R.E.Mulvey, E.Rentschler, L.Russo|2009|Angew.Chem.,Int.Ed.|48|3317|doi:10.1002/anie.200805566
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqqsx3
title: CCDC 677316: Experimental Crystal Structure Determination

description: Related Article: M.Itazaki, K.Ueda, H.Nakazawa|2009|Angew.Chem.,Int.Ed.|48|3313|doi:10.1002/anie.200805112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.23014.55367
title: PETER THE NOT SO GREAT IS SURROUNDED