cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6137507.v1
title: Data from: Detection of Artificially Generated Seismic Signals using Balloon-borne Infrasound Sensor

description: These data are related to the seismic hammer experiment discussed in "Detection of Artificially Generated Seismic Signals using Balloon-borne Infrasound Sensor" by Krishnamoorthy et al. (2018), doi:10.1002/2018GL077481.<br><br>The zip file contains 10 .dat files and 1 .txt file. The .txt file contains the shot times in GPS time. The 10 .dat files contain the GPS positions of the five barometers described in the text and the unfiltered absolute pressure recorded by them.
DOI: 10.6084/m9.figshare.6137504
title: 1000Gphase3.5superpopulations.hg19.tsv.gz

description: From 1000 genomes allele frequency data, kept only SNPs passing LD-based pruning with r2 value 0.2 using PLINK1.9.Reference. Harismendy O, Kim J, Xu X, Ohno-Machado L.Sharing genetic admixture and diversity of public biomedical datasets.
DOI: 10.6084/m9.figshare.6137501
title: dataset.xlsx

description: Dataset used for the STI 2018 conference
DOI: 10.6084/m9.figshare.6137504.v1
title: 1000Gphase3.5superpopulations.hg19.tsv.gz

description: From 1000 genomes allele frequency data, kept only SNPs passing LD-based pruning with r2 value 0.2 using PLINK1.9.Reference. Harismendy O, Kim J, Xu X, Ohno-Machado L.Sharing genetic admixture and diversity of public biomedical datasets.
DOI: 10.6084/m9.figshare.6137501.v1
title: dataset.xlsx

description: Dataset used for the STI 2018 conference
DOI: 10.6084/m9.figshare.6137450.v1
title: Insulin increases cholesterol uptake, lipid droplet content and apolipoprotein B secretion in CaCo-2 cells by upregulating SR-BI via a PI3K, AKT and mTOR dependent pathway

description: SR-BI levels and intracellular lipids in CaCo-2 cells with insulin stimulation with or without SR-BI pharmacological blocking
DOI: 10.6084/m9.figshare.6137351
title: Webb McA Frontiers

description: 6 videos as supplementary material for a Frontiers paper<br>
DOI: 10.6084/m9.figshare.6137351.v1
title: Webb McA Frontiers

description: 6 videos as supplementary material for a Frontiers paper<br>
DOI: 10.6084/m9.figshare.6137264
title: regression_ev

description: regression
DOI: 10.6084/m9.figshare.6137264.v1
title: regression_ev

description: regression
DOI: 10.6084/m9.figshare.6134795
title: regression analysis

description: data for linear regression analysis
DOI: 10.6084/m9.figshare.6133862

description: This dataset is part of an ethnopharmacological species with therapeutic potential investigation, This investigation evaluated the antifungal activity of two Ecuadorian native species and
DOI: 10.6084/m9.figshare.6133862.v1
title: Diameter of inhibition halos of Ambrosia arborescens extract and Aristeguietia glutinosa essential oil against fungus

description: This dataset is part of an ethnopharmacological species with therapeutic potential investigation, This investigation evaluated the antifungal activity of two Ecuadorian native species and their inhibition halo against diferent fungus.
DOI: 10.6084/m9.figshare.6133805
title: A systematic review dataset describing the studies of positive interactions and the niche in deserts.

description: To synthesize the breadth of concepts and approaches used to concurrently study niche and positive plant interactions in deserts, we conducted a formalized systematic review. in early 2018, we conducted a search of the peer-reviewed literature using the Web of Science with the following terms: “niche“ AND (“plant facilitat*” OR “nurse plant” OR “positive interact*) AND (“arid” OR “desert”). After removing duplicates, the following data were extracted to categorize the studies. The code and full list of studies are provided on GitHub: https://cjlortie.github.io/desert.niche.facilitation/
DOI: 10.6084/m9.figshare.6133805.v1
title: A systematic review dataset describing the studies of positive interactions and the niche in deserts.

description: To synthesize the breadth of concepts and approaches used to concurrently study niche and positive plant interactions in deserts, we conducted a formalized systematic review. in early 2018, we conducted a search of the peer-reviewed literature using the Web of Science with the following terms: “niche“ AND (“plant facilitat*” OR “nurse plant” OR “positive interact*) AND (“arid” OR “desert”). After removing duplicates, the following data were extracted to categorize the studies. The code and full list of studies are provided on GitHub: https://cjlortie.github.io/desert.niche.facilitation/
DOI: 10.6084/m9.figshare.6133796
title: Morphology and molecular phylogeny of <i>Hyalosynedra lanceolata</i> sp. nov. and an extended description of <i>Hyalosynedra</i> (Bacillariophyta)

description: The araphid diatom genus <i>Hyalosynedra</i> is a very common component of marine benthic communities, occurring as an epiphyte or colonizing hard substrata, and has a worldwide distribution. The hyaline appearance of the valve and the high striation density, which is indiscernible under a light microscope, makes the identification of most species difficult and very few studies have investigated their morphology, phylogeny or ecology in detail. In an extensive study of diatom communities from the hypersaline Mar Menor coastal lagoon (SE Spain), several new taxa were found. Herein we propose <i>Hyalosynedra lanceolata</i> sp. nov. based on morphological observations (light and electron microscopy) and molecular data (phylogenetic and sequence divergence analyses). The species has distinctive morphological characters (radiate colony, biseriate striation, lanceolate sternum and two long laminar lobed chloroplasts) that are new for the genus and have been included in a proposal to extend the genus description. Our results also show that <i>H. toxoneides</i> does not belong to <i>Hyalosynedra</i>, but appears to be more closely related to <i>Thalassionema</i> and <i>Thalassiothrix</i>. However, further molecular and morphological research is needed to clarify its taxonomic position.
DOI: 10.6084/m9.figshare.6133796.v1
title: Morphology and molecular phylogeny of <i>Hyalosynedra lanceolata</i> sp. nov. and an extended description of <i>Hyalosynedra</i> (Bacillariophyta)

description: The araphid diatom genus <i>Hyalosynedra</i> is a very common component of marine benthic communities, occurring as an epiphyte or colonizing hard substrata, and has a worldwide distribution. The hyaline appearance of the valve and the high striation density, which is indiscernible under a light microscope, makes the identification of most species difficult and very few studies have investigated their morphology, phylogeny or ecology in detail. In an extensive study of diatom communities from the hypersaline Mar Menor coastal lagoon (SE Spain), several new taxa were found. Herein we propose <i>Hyalosynedra lanceolata</i> sp. nov. based on morphological observations (light and electron microscopy) and molecular data (phylogenetic and sequence divergence analyses). The species has distinctive morphological characters (radiate colony, biseriate striation, lanceolate sternum and two long laminar lobed chloroplasts) that are new for the genus and have been included in a proposal to extend the genus description. Our results also show that <i>H. toxoneides</i> does not belong to <i>Hyalosynedra</i>, but appears to be more closely related to <i>Thalassionema</i> and <i>Thalassiothrix</i>. However, further molecular and morphological research is needed to clarify its taxonomic position.
DOI: 10.6084/m9.figshare.6133754
title: PDB files used in the system preparation, AMBER topologies and coordinates and force field parameters for non-standard residues: The Influence of Chemical Change on Protein Dynamics: A Case Study with Pyruvate Formate-Lyase

description: We provide AMBER topology (parm7) and coordinate files (pdb and rst7) for PFL systems before and after the first half-reaction together with library and frcmod files (lib and frcmod) for non-standard residues (bonded and non-bonded force field parameters).<br><br>mPFL - monomeric PFL system before the first half-reaction (radical on C418)<br>dPFL - dimeric PFL system before the first half-reaction (radical on C418)<br>mAcPFLI - monomeric PFL system after the first half-reaction (radical on formyl)<br>dAcPFLI - dimeric PFL system after the first-half reaction (radical on formyl)<br>mAcPFLII - monomeric PFL system after the first half-reaction (radical on C419)<br>dAcPFLII - dimeric PFL system after the first half-reaction (radical on C419)<br>PYR - pyruvate<br>FOR - CO<sub>2</sub><sup>-</sup> radical<br>FOH - formate<br>CYR - cysteinyl radical<br>CYA - S-acetyl-cysteine<br><br>Electrostatic potentials were derived from the IEF-PCM B3LYP/cc-pVTZ//HF/6-31G(d,p) calculationsm while the atomic partial charges were developed using RESP procedure.<br>
DOI: 10.6084/m9.figshare.6133754.v1
title: PDB files used in the system preparation, AMBER topologies and coordinates and force field parameters for non-standard residues: The Influence of Chemical Change on Protein Dynamics: A Case Study with Pyruvate Formate-Lyase

description: We provide AMBER topology (parm7) and coordinate files (pdb and rst7) for PFL systems before and after the first half-reaction together with library and frcmod files (lib and frcmod) for non-standard residues (bonded and non-bonded force field parameters).<br><br>mPFL - monomeric PFL system before the first half-reaction (radical on C418)<br>dPFL - dimeric PFL system before the first half-reaction (radical on C418)<br>mAcPFLI - monomeric PFL system after the first half-reaction (radical on formyl)<br>dAcPFLI - dimeric PFL system after the first-half reaction (radical on formyl)<br>mAcPFLII - monomeric PFL system after the first half-reaction (radical on C419)<br>dAcPFLII - dimeric PFL system after the first half-reaction (radical on C419)<br>PYR - pyruvate<br>FOR - formyl radical<br>FOH - formate<br>CYR - cysteinyl radical<br>CYA - S-acetyl-cysteine<br><br>Electrostatic potentials were derived from the IEF-PCM B3LYP/cc-pVTZ//HF/6-31G(d,p) calculationsm while the atomic partial charges were developed using RESP procedure.<br>
DOI: 10.6084/m9.figshare.6133754.v2
title: PDB files used in the system preparation, AMBER topologies and coordinates and force field parameters for non-standard residues: The Influence of Chemical Change on Protein Dynamics: A Case Study with Pyruvate Formate-Lyase

description: We provide AMBER topology (parm7) and coordinate files (pdb and rst7) for PFL systems before and after the first half-reaction together with library and frcmod files (lib and frcmod) for non-standard residues (bonded and non-bonded force field parameters).<br><br>mPFL - monomeric PFL system before the first half-reaction (radical on C418)<br>dPFL - dimeric PFL system before the first half-reaction (radical on C418)<br>mAcPFLI - monomeric PFL system after the first half-reaction (radical on formyl)<br>dAcPFLI - dimeric PFL system after the first-half reaction (radical on formyl)<br>mAcPFLII - monomeric PFL system after the first half-reaction (radical on C419)<br>dAcPFLII - dimeric PFL system after the first half-reaction (radical on C419)<br>PYR - pyruvate<br>FOR - formyl radical<br>FOH - formate<br>CYR - cysteinyl radical<br>CYA - S-acetyl-cysteine<br><br>Electrostatic potentials were derived from the IEF-PCM B3LYP/cc-pVTZ//HF/6-31G(d,p) calculationsm while the atomic partial charges were developed using RESP procedure.<br>
DOI: 10.6084/m9.figshare.6133742
title: Physicians’ attitudes when faced with life-threatening events in children with severe neurological disabilities

description: <b>Purpose:</b> Children with severe neurological disabilities are at an increased risk of acute, life-threatening events. We assessed physicians’ attitudes when making decisions in these situations. <b>Methods:</b> We surveyed physicians in pediatric intensive care, neurology, and rehabilitation units in Swiss hospitals. The questionnaire explored participants’ attitudes toward life-threatening situations in two scenarios: a child with profound intellectual and multiple disabilities (PIMD) and an infant with spinal muscular atrophy (SMA) type I. <b>Results:</b> The participation rate was 55% (52/95). There was a consensus favoring non-invasive ventilation and comfort care as well as avoiding tracheostomy and invasive ventilation. For the child with PIMD, 61% of participants opposed cardiopulmonary resuscitation (CPR), 51% for the child with SMA. Physicians with over 20 years of experience were significantly more opposed to providing CPR than less experienced colleagues. <b>Conclusions:</b> Physicians held different views, influenced by personal factors. This highlights the importance of standardizing multidisciplinary processes toward approaching these complex situations.
DOI: 10.6084/m9.figshare.6133742.v1
title: Physicians’ attitudes when faced with life-threatening events in children with severe neurological disabilities

description: <b>Purpose:</b> Children with severe neurological disabilities are at an increased risk of acute, life-threatening events. We assessed physicians’ attitudes when making decisions in these situations. <b>Methods:</b> We surveyed physicians in pediatric intensive care, neurology, and rehabilitation units in Swiss hospitals. The questionnaire explored participants’ attitudes toward life-threatening situations in two scenarios: a child with profound intellectual and multiple disabilities (PIMD) and an infant with spinal muscular atrophy (SMA) type I. <b>Results:</b> The participation rate was 55% (52/95). There was a consensus favoring non-invasive ventilation and comfort care as well as avoiding tracheostomy and invasive ventilation. For the child with PIMD, 61% of participants opposed cardiopulmonary resuscitation (CPR), 51% for the child with SMA. Physicians with over 20 years of experience were significantly more opposed to providing CPR than less experienced colleagues. <b>Conclusions:</b> Physicians held different views, influenced by personal factors. This highlights the importance of standardizing multidisciplinary processes toward approaching these complex situations.
DOI: 10.6084/m9.figshare.6133511
title: Supplementary Material for: Comparing the Efficacy of CBASP with Two Versions of CBT for Depression in a Routine Care Center: A Randomized Clinical Trial

description: <b><i>Background:</i></b> The cognitive-behavioral analysis system of psychotherapy (CBASP) was developed for the treatment of chronic, early-onset depression. However, it is unclear whether this approach can be recommended for depression in general (episodic and chronic), and no direct comparisons between CBASP with different versions of cognitive-behavioral therapy (CBT) exist. <b><i>Methods:</i></b> A randomized controlled trial compared 3 treatment conditions (all lasting 16 sessions) with a waiting list group (WL): CBASP, CBT with a focus on physical exercise (CBT-E), and CBT with a focus on pleasurable, low-energy and mindful activities (CBT-M). We included 173 patients and involved 41 therapists. Assessments were at baseline, after session 8, and at the end of treatment. <b><i>Results:</i></b> Our primary outcome Beck Depression Inventory-II indicated a general advantage of the CBT arms compared to CBASP [<i>F</i>(6, 154.5) = 4.2, <i>p</i> = 0.001], with significant contrasts in particular in favor of CBT-E. Effect sizes against WL were <i>d</i> = 0.91 (CBT-E), 0.87 (CBT-M), and 0.47 (CBASP). A triple interaction with an additional factor “chronic versus episodic depression” [<i>F</i>(6, 142.7) = 2.2, <i>p</i> = 0.048] indicated that the treatments resulted in different outcomes, with best results again for CBT-E in particular in episodic depression. Responder rates indicated significant improvements (56% in both CBT arms, 34% in the CBASP arm, 3.4% in WL; intention-to-treat samples). As compared to CBASP, response rates were significantly higher for CBT-E (OR = 2.48; 95% CI = 1.02–6.00) and CBT-M (OR = 2.46; 95% CI = 1.01–6.01). <b><i>Conclusions:</i></b> CBASP was more effective than WL, but less effective than the 2 CBT arms. This was mainly caused by an advantage of CBT interventions in episodic depression.
DOI: 10.6084/m9.figshare.6133457
title: dataset-v1.pcap

description: The dataset consists of 9 hosts: 1x HMI; 1x Data Historian; 5x RTU; 1x MITM Attacker; 1x Reconnaissance. The man in the middle (MITM) attack targets IEC104, which replaces the COT value to an invalid value. <br><br>There is one dataset in two formats. PCAP and binary format fot SiLK[1]<br>[1] https://tools.netsa.cert.org/silk/docs.html<br>
DOI: 10.6084/m9.figshare.6133310
title: manuscript data.xlsx

description: Data to accompany manuscript: <b>Peptide-conjugated phosphodiamidate oligomer-mediated exon skipping therapy has benefits for cardiac function in <i>mdx</i> and <i>Cmah-/-mdx</i> mouse models of Duchenne Muscular Dystrophy:PONE-D-18-03354</b>
DOI: 10.6084/m9.figshare.6133310.v1
title: manuscript data.xlsx

description: Data to accompany manuscript: <b>Peptide-conjugated phosphodiamidate oligomer-mediated exon skipping therapy has benefits for cardiac function in <i>mdx</i> and <i>Cmah-/-mdx</i> mouse models of Duchenne Muscular Dystrophy:PONE-D-18-03354</b>
DOI: 10.6084/m9.figshare.6133160
title: We only believe in news that we doctored ourselves.sav

description: The data was collected using an online questionnaire. We measured the acceptance of pipedream political fake news, the perceived independence of source, economic prosperity, conspiracy mentality, party preference and political ideology.
DOI: 10.6084/m9.figshare.6133160.v1
title: We only believe in news that we doctored ourselves.sav

description: The data was collected using an online questionnaire. We measured the acceptance of pipedream political fake news, the perceived independence of source, economic prosperity, conspiracy mentality, party preference and political ideology.
DOI: 10.6084/m9.figshare.6132518
title: Additional file 2: of A genetically and functionally diverse group of non-diazotrophic Bradyrhizobium spp. colonizes the root endophytic compartment of Arabidopsis thaliana

description: Table S2. Assembly statistics (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6132518.v1
title: Additional file 2: of A genetically and functionally diverse group of non-diazotrophic Bradyrhizobium spp. colonizes the root endophytic compartment of Arabidopsis thaliana

description: Table S2. Assembly statistics (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6132515
title: Additional file 1: of A genetically and functionally diverse group of non-diazotrophic Bradyrhizobium spp. colonizes the root endophytic compartment of Arabidopsis thaliana

description: Table S1. DNA fingerprinting of 102 isolates (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6132515.v1
title: Additional file 1: of A genetically and functionally diverse group of non-diazotrophic Bradyrhizobium spp. colonizes the root endophytic compartment of Arabidopsis thaliana

description: Table S1. DNA fingerprinting of 102 isolates (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6132491
title: Additional file 1: of Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level

description: Supporting Information. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.6132491.v1
title: Additional file 1: of Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level

description: Supporting Information. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.6132434
title: Additional file 5: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 6. ML trees of the non-Vertebrata Deuterostomia preGNAI and preGNAQ nucleotide sequences which corresponded to the mutually exclusive exons, exon6 or exon5, respectively. Bootstrapped replicates were summarized into Extended Majority Rule Consensus Trees and reported with bootstrap (BS) values in Nexml format. (NEXML 37 kb)
DOI: 10.6084/m9.figshare.6132434.v1
title: Additional file 5: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 6. ML trees of the non-Vertebrata Deuterostomia preGNAI and preGNAQ nucleotide sequences which corresponded to the mutually exclusive exons, exon6 or exon5, respectively. Bootstrapped replicates were summarized into Extended Majority Rule Consensus Trees and reported with bootstrap (BS) values in Nexml format. (NEXML 37 kb)
DOI: 10.6084/m9.figshare.6132422
title: Additional file 4: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 5. Maximum Likelihood Tree of duplications of exon4 in GNAQ and GNA11 and the homologous sequence of preGNAI, encoded by exon5, duplicated in Urochordata. Bootstrapped replicates were summarized into Extended Majority Rule Consensus Trees and reported with bootstrap (BS) values in Nexml format. (NEXML 74 kb)
DOI: 10.6084/m9.figshare.6132422.v1
title: Additional file 4: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 5. Maximum Likelihood Tree of duplications of exon4 in GNAQ and GNA11 and the homologous sequence of preGNAI, encoded by exon5, duplicated in Urochordata. Bootstrapped replicates were summarized into Extended Majority Rule Consensus Trees and reported with bootstrap (BS) values in Nexml format. (NEXML 74 kb)
DOI: 10.6084/m9.figshare.6132413
title: Additional file 4: of Operational utility of the reverse-transcription recombinase polymerase amplification for detection of dengue virus

description: Table S4. Data on user satisfaction in the interpretation of results. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6132413.v1
title: Additional file 4: of Operational utility of the reverse-transcription recombinase polymerase amplification for detection of dengue virus

description: Table S4. Data on user satisfaction in the interpretation of results. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6132407
title: Additional file 3: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 4. Maximum Likelihood Tree built on the nucleotide level further supports the emergence of GNAI1–4, GNAT1–4, and GNAZ, in addition to GNAO paralogs from the 2R WGD in Vertebrata. It shows the pattern of GNAI0-GNAT0 duplication by resolving GNAI2 as the outgroup of the Gαi subfamily and GNAT1 as outgroup of the Gαt subfamily when excluding lamprey sequences. (NEXML 302 kb)
DOI: 10.6084/m9.figshare.6132407.v1
title: Additional file 3: of Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

description: Supplemental file 4. Maximum Likelihood Tree built on the nucleotide level further supports the emergence of GNAI1–4, GNAT1–4, and GNAZ, in addition to GNAO paralogs from the 2R WGD in Vertebrata. It shows the pattern of GNAI0-GNAT0 duplication by resolving GNAI2 as the outgroup of the Gαi subfamily and GNAT1 as outgroup of the Gαt subfamily when excluding lamprey sequences. (NEXML 302 kb)
DOI: 10.6084/m9.figshare.6132395
title: Additional file 3: of Operational utility of the reverse-transcription recombinase polymerase amplification for detection of dengue virus

description: Table S3. Data on user satisfaction in performing the one step RT-RPA. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6132395.v1
title: Additional file 3: of Operational utility of the reverse-transcription recombinase polymerase amplification for detection of dengue virus

description: Table S3. Data on user satisfaction in performing the one step RT-RPA. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6132380
title: Additional file 5 of Comparisons of gene coexpression network modules in breast cancer and ovarian cancer

description: DO enrichment results. This file lists all the DO enriched terms for each module. â geneIDâ is the Entrez gene id. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.6132380.v1
title: Additional file 5 of Comparisons of gene coexpression network modules in breast cancer and ovarian cancer

description: DO enrichment results. This file lists all the DO enriched terms for each module. â geneIDâ is the Entrez gene id. (XLSX 54 kb)