cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28661606
title: Supplementary Material for: Risk of gallstones increases with multiple dimensions of obesity indexes: a prospective study based on the UK Biobank

description: Introduction: Numerous cohort studies have consistently shown a significant link between obesity and an increased risk of gallstones. However, BMI alone may not fully capture the complexity of obesity. This study aimed to analyze the associations between different obesity indexes and the incidence of gallstones, using a competing risk model.
Methods: 459,523 UK Biobank participants without gallstones at baseline were analyzed. Cox proportional hazards models, competing risk models, and restricted cubic spline (RCS) were performed to assess the longitudinal associations between 11 obesity indexes including a body shape index (ABSI), body adiposity index (BAI), body roundness index (BRI), conicity index (ConI), cardiometabolic index (CMI), hip circumference(HC), visceral adiposity index (VAI), lipid accumulation product (LAP), waist circumference (WC), waist-to-height ratio (WHtR), and waist-to-hip ratio (WHR) apart from BMI and gallstone occurrence risk, respectively. 
Results: Over a follow-up period of 12.54 years, a total of 14,951 participants developed gallstones. After adjusting for confounding factors, competing risk regression analyses revealed that BMI, BRI, BAI, CI, CMI, HC, LAP, VAI, WC, and WHtR were all positively associated with an increased risk of gallstones. ABSI and WHR showed a "J-shaped" association with the incidence of gallstones, suggesting a non-linear relationship. Sensitivity analyses confirmed the consistency of the results even after excluding participants who developed gallstones within one year of follow-up. 
Conclusion: Different dimensions of obesity are all significantly associated with an increased risk of gallstones. These findings highlight the importance of managing obesity, including both overall body weight and abdominal fat, to prevent the occurrence of gallstones.
DOI: 10.6084/m9.figshare.28661606.v1
title: Supplementary Material for: Risk of gallstones increases with multiple dimensions of obesity indexes: a prospective study based on the UK Biobank

description: Introduction: Numerous cohort studies have consistently shown a significant link between obesity and an increased risk of gallstones. However, BMI alone may not fully capture the complexity of obesity. This study aimed to analyze the associations between different obesity indexes and the incidence of gallstones, using a competing risk model.
Methods: 459,523 UK Biobank participants without gallstones at baseline were analyzed. Cox proportional hazards models, competing risk models, and restricted cubic spline (RCS) were performed to assess the longitudinal associations between 11 obesity indexes including a body shape index (ABSI), body adiposity index (BAI), body roundness index (BRI), conicity index (ConI), cardiometabolic index (CMI), hip circumference(HC), visceral adiposity index (VAI), lipid accumulation product (LAP), waist circumference (WC), waist-to-height ratio (WHtR), and waist-to-hip ratio (WHR) apart from BMI and gallstone occurrence risk, respectively. 
Results: Over a follow-up period of 12.54 years, a total of 14,951 participants developed gallstones. After adjusting for confounding factors, competing risk regression analyses revealed that BMI, BRI, BAI, CI, CMI, HC, LAP, VAI, WC, and WHtR were all positively associated with an increased risk of gallstones. ABSI and WHR showed a "J-shaped" association with the incidence of gallstones, suggesting a non-linear relationship. Sensitivity analyses confirmed the consistency of the results even after excluding participants who developed gallstones within one year of follow-up. 
Conclusion: Different dimensions of obesity are all significantly associated with an increased risk of gallstones. These findings highlight the importance of managing obesity, including both overall body weight and abdominal fat, to prevent the occurrence of gallstones.
DOI: 10.6084/m9.figshare.28661609
title: Supplementary Material for: Cellular scaling rules for brains of the galliform birds (Aves, Galliformes) compared to those of songbirds and parrots: Distantly related avian lineages have starkly different neuronal cerebrotypes

description: Introduction: Songbirds, especially corvids, and parrots are remarkably intelligent. Their cognitive skills are on par with primates and their brains contain primate-like numbers of neurons concentrated in high densities in the telencephalon. Much less is known about cognition and neuron counts in more basal bird lineages. Here, we focus on brain cellular composition of galliform birds, which have small brains relative to body size and a proportionally small telencephalon and are often perceived as cognitively inferior to most other birds. Methods: We use the isotropic fractionator to assess quantitatively the numbers and distributions of neurons and nonneuronal cells in 15 species of galliform birds and compare their cellular scaling rules with those of songbirds, parrots, marsupials, insectivores, rodents and primates. Results: On average, the brains of galliforms contain about half the number of neurons found in parrot and songbird brains of the same mass. Moreover, in contrast to these birds, galliforms resemble mammals in having small telencephalic and dominant cerebellar neuronal fractions. Consequently, galliforms have much smaller absolute numbers of neurons in their forebrains than equivalently sized songbirds and parrots, which may limit their cognitive abilities. However, galliforms have similar neuronal densities and neuron counts in the brain and forebrain as equally sized non-primate mammals. Therefore, it is not surprising that cognitive abilities of galliforms are on par with non-primate mammals in many domains. Conclusion: Comparisons performed in this study demonstrate that birds representing distantly related clades markedly differ in neuronal densities, neuron numbers and the allocation of brain neurons to major brain divisions. In analogy with the concept of volumetric composition of the brain, known as the cerebrotype, we conclude that distantly related birds have distinct neuronal cerebrotypes.
DOI: 10.15468/dl.famwye
title: Occurrence Download

description: A dataset containing 564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.28_2",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 564 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000662-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15084616
title: IODP Expedition 341 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.5281/zenodo.15084617
title: IODP Expedition 341 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.6084/m9.figshare.28661576
title: Data for "Major May tornado outbreaks in the United States: Novel multiscale atmospheric patterns identified using maximum covariance analysis"

description: ML_WMAXSHEAR parameter (netCDF format) calculated using hybrid-sigma levels of ERA5 reanalysis and thundeR rawinsonde processing package for the area of the United States and period 1954-2022, at 1h steps, and only for May. This data was used in<i> </i>"Major May tornado outbreaks in the United States: Novel multiscale atmospheric patterns identified using maximum covariance analysis" (https://doi.org/10.1016/j.atmosres.2024.107872).
DOI: 10.6084/m9.figshare.28661576.v1
title: Data for "Major May tornado outbreaks in the United States: Novel multiscale atmospheric patterns identified using maximum covariance analysis"

description: ML_WMAXSHEAR parameter (netCDF format) calculated using hybrid-sigma levels of ERA5 reanalysis and thundeR rawinsonde processing package for the area of the United States and period 1954-2022, at 1h steps, and only for May. This data was used in<i> </i>"Major May tornado outbreaks in the United States: Novel multiscale atmospheric patterns identified using maximum covariance analysis" (https://doi.org/10.1016/j.atmosres.2024.107872).
DOI: 10.15468/dl.8qbvu9
title: Occurrence Download

description: A dataset containing 6106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Odonata Central",
 "GadmGid is USA.14_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2018-2025"
 ]
}

 The dataset includes 6106 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000663-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.futufq
title: Occurrence Download

description: A dataset containing 43703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "PublishingCountry is Zimbabwe",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 43703 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000664-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcxhwb
title: Occurrence Download

description: A dataset containing 727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Occurrence evidence)",
 "Continent is one of (Antarctica, Europe, North America, South America)",
 "Country is one of (Brazil, Sweden, Canada, Norway, Estonia, Antarctica, United States of America, Poland, Denmark, Colombia, Lithuania)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coccomyxa Schmidle, 1901"
 ]
}

 The dataset includes 727 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000665-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15083716
title: In the Way to More Sustainable Nitrogen Management in European Agriculture - Changes in Fertilization Efficiency in the Context of the Sustainable Intensification Concept

description: Data for estimiation changes in Nitrogen fertilization efficiency in the context of the sustainable intensification concept
DOI: 10.5281/zenodo.15083717
title: In the Way to More Sustainable Nitrogen Management in European Agriculture - Changes in Fertilization Efficiency in the Context of the Sustainable Intensification Concept

description: Data for estimiation changes in Nitrogen fertilization efficiency in the context of the sustainable intensification concept
DOI: 10.15468/dl.nukukc
title: Occurrence Download

description: A dataset containing 13979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia",
 "Year 2001-2020"
 ]
}

 The dataset includes 13979 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000666-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28644314
title: Data Files and R script

description: We investigated how parasitism affects immune function and heat tolerance in a tropical lizard.
DOI: 10.5281/zenodo.13921924
title: A metagenomic analysis of human gut microbiomes and bacterial genomes in relation to colorectal cancer

description: We recently published comparative metagenomic and genomic analyses of published sequencing datasets representing human fecal microbiomes and genomes of bacterial isolates in relation to colorectal cancer (CRC) or health (doi:10.1038/s41598-024-70702-1). We applied a gene cluster-based approach (co-associated genes, or CAGs) to identifying gene-level microbial correlates of CRC, and we used that approach to ultimately connect the gut microbiome to senescence gene expression signatures in discrete colonic cellular populations. However, most CAG-CRC relationships remain unexplored. Here we present our methods and results in more detail so that other members of the community can utilize our work to identify and study strain-level diversity (and underlying gene-level differences) underlying biological effects in CRC and other diseases. The data records presented here include gene catalogs of thousands of bacterial species from gut microbiomes of individuals with CRC, 10 pan-genomes of species that we used in our preclinical CRC model, and the species-level pan-genome of 90 Enterobacteriaceae strains that represented a unique family of gut bacteria that encode both CRC- and health-associated genes.
DOI: 10.5281/zenodo.13921925
title: A metagenomic analysis of human gut microbiomes and bacterial genomes in relation to colorectal cancer

description: We recently published comparative metagenomic and genomic analyses of published sequencing datasets representing human fecal microbiomes and genomes of bacterial isolates in relation to colorectal cancer (CRC) or health (doi:10.1038/s41598-024-70702-1). We applied a gene cluster-based approach (co-associated genes, or CAGs) to identifying gene-level microbial correlates of CRC, and we used that approach to ultimately connect the gut microbiome to senescence gene expression signatures in discrete colonic cellular populations. However, most CAG-CRC relationships remain unexplored. Here we present our methods and results in more detail so that other members of the community can utilize our work to identify and study strain-level diversity (and underlying gene-level differences) underlying biological effects in CRC and other diseases. The data records presented here include gene catalogs of thousands of bacterial species from gut microbiomes of individuals with CRC, 10 pan-genomes of species that we used in our preclinical CRC model, and the species-level pan-genome of 90 Enterobacteriaceae strains that represented a unique family of gut bacteria that encode both CRC- and health-associated genes.
DOI: 10.15468/dl.crtp9p
title: Occurrence Download

description: A dataset containing 9062 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 9062 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000667-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/h0a-lvg-rv1
title: Apamea (Apamea) oblonga (Haworth, 1809)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3rv-3bx-hsv
title: Apamea (Apamea) remissa (Hübner)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9z-qp3-k4w
title: Litoligia literosa (Haworth, 1809)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-tebe
title: PAN-00015200 - coin/coin-related, provincie (Overijssel), rijderschelling

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00015200&lt;/p&gt;
description: Modified: 2019-09-10T10:33:35+02:00
DOI: 10.3535/ae3-91s-2wa
title: Oligia strigilis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dda-l5w-606
title: Mesoligia furuncula [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88d-f39-8pj
title: Mesapamea secalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s1v-xbc-4b6
title: Apamea (Apamea) unanimis (Hübner, 1813)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h86-e3s-vaj
title: Apamea (Apamea) oblonga (Haworth, 1809)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lda-myr-k0m
title: Mesoligia furuncula [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9c6-l76-7vn
title: Mesapamea secalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jsb-k96-hee
title: Apamea (Apamea) remissa (Hübner)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-tk7p
title: Rapportage archeologisch bureauonderzoek en verkennend booronderzoek De Hees 10 te Sevenum

description: &lt;p&gt;Op basis van de waargenomen bodemverstoringen en de aanwezigheid van bebouwing op een deel van de nieuwbouwlocatie, kan worden geconcludeerd dat archeologische waarden niet meer in situ worden verwacht. De gespecificeerde archeologische verwachting, zoals die is weergegeven tijdens het bureauonderzoek, is door het booronderzoek bijgesteld naar laag voor alle perioden.&lt;/p&gt;
DOI: 10.3535/qce-tml-ynx
title: Photedes Lederer, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60g-r9n-9t6
title: Apamea (Apamea) remissa (Hübner)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/62n-0v1-xje
title: Rhizedra lutosa Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-tpp3
title: PAN-00092359 - coin/coin-related, Dirk VII (1190-1213), penning

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00092359&lt;/p&gt;
description: Modified: 2021-12-08T11:53:46+01:00
DOI: 10.3535/1d2-tjq-xax
title: Parastichtis suspecta Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nna-9jd-jqs
title: Trachea atriplicis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/12b-aa8-b45
title: Parastichtis suspecta Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4s9-1m7-lz2
title: Lateroligia ophiogramma (Esper, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lry-gm9-vc5
title: Archanara Walker, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/47v-vvk-9jc
title: Tiliacea citrago Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/asc-dsc-xsq
title: Tiliacea aurago [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fap-paj-bev
title: Luperina testacea [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zt0-xgz-0z7
title: Hydraecia micacea Esper, 1789

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-umun
title: PAN-00062255 - cloth seal with pin

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00062255&lt;/p&gt;
description: Modified: 2020-06-18T10:30:39+02:00
DOI: 10.3535/h7m-p3n-hqz
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kw7-9rn-aw6
title: Mesapamea secalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qsk-ysx-0vb
title: Arenostola phragmitidis Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vyk-p5y-7k0
title: Archanara Walker, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/83x-1yn-43k
title: Lenisa geminipuncta Haworth, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/exz-n5v-r37
title: Lateroligia ophiogramma (Esper, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b96-fjt-dkw
title: Apamea (Apamea) lithoxylaea ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n30-p8j-1je
title: Lenisa geminipuncta Haworth, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-uxpe
title: PAN-00002474 - wire brooch with angular bow variant A1

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00002474&lt;/p&gt;
description: Modified: 2019-04-18T08:46:50+02:00
DOI: 10.3535/8rd-s9h-y3b
title: Rhizedra lutosa Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mbq-3pq-2fj
title: Charanyca (Rusina) Stephens, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cqa-wmg-jxc
title: Apamea (Apamea) sublustris (Esper)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zgh-63e-x95
title: Mesapamea secalis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xzg-vxe-epj
title: Apamea (Apamea) oblonga (Haworth, 1809)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-vqa5
title: Plangebied Tegelseweg, gemeente Venlo

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
DOI: 10.3535/g43-2hz-d5j
title: Apamea (Apamea) monoglypha (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nly-n3l-fn2
title: Rhizedra lutosa Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e6x-ex6-t16
title: Apamea (Apamea) unanimis (Hübner, 1813)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyh-6fj-6l0
title: Oligia fasciuncula (Haworth, 1809)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-zs9-wex8
title: PAN-00020727 - wire brooch with angular bow

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00020727&lt;/p&gt;
description: Modified: 2019-10-04T09:14:06+02:00
DOI: 10.3535/3bz-ph8-vfd
title: Apamea (Apamea) sordens (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h0j-249-jxx
title: Lenisa geminipuncta Haworth, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.