cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6n4g650
title: Data from: Persistent postmating, prezygotic reproductive isolation between populations

description: Studying reproductive barriers between populations of the same species is
 critical to understand how speciation may proceed. Growing evidence
 suggests postmating, prezygotic (PMPZ) reproductive barriers play an
 important role in the evolution of early taxonomic divergence. However,
 the contribution of PMPZ isolation to speciation is typically studied
 between species in which barriers that maintain isolation may not be those
 that contributed to reduced gene flow between populations. Moreover, in
 internally fertilizing animals, PMPZ isolation is related to male
 ejaculate – female reproductive tract incompatibilities but few studies
 have examined how mating history of the sexes can affect the strength of
 PMPZ isolation and the extent to which PMPZ isolation is repeatable or
 restricted to particular interacting genotypes. We addressed these
 outstanding questions using multiple populations of Drosophila montana. We
 show a recurrent pattern of PMPZ isolation, with flies from one population
 exhibiting reproductive incompatibility in crosses with all three other
 populations, while those three populations were fully fertile with each
 other. Reproductive incompatibility is due to lack of fertilization and is
 asymmetrical, affecting female fitness more than males. There was no
 effect of male or female mating history on reproductive incompatibility,
 indicating that PMPZ isolation persists between populations. We found no
 evidence of variability in fertilization outcomes attributable to
 different female x male genotype interactions, and in combination with our
 other results, suggests that PMPZ isolation is not driven by idiosyncratic
 genotype x genotype interactions. Our results show PMPZ isolation as a
 strong, consistent barrier to gene flow early during speciation and
 suggest several targets of selection known to affect ejaculate-female
 reproductive tract interactions within species that may cause this PMPZ
 isolation.
description: Garlovksy and Snook 2018
 Ecology and EvolutionData file consists of 5
 excel workbook pages, where each page contains data from a different
 experiment presented in the paper. Readme file provides the link between
 these data and figures/tables in the paper, describing what each column of
 data signifies.submitted single file Garlovsky
 and Snook.xlsx
DOI: 10.15468/dl.dt58fp
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cestrum diurnum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 307 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000871-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1237
title: Data from: Reduced genetic diversity, increased isolation and multiple introductions of invasive giant hogweed in the western Swiss Alps

description: The Giant Hogweed (Heracleum mantegazzianum) has successfully invaded 19
 European countries as well as parts of North America. It has become a
 problematic species due to its ability to displace native flora and to
 cause public health hazards. Applying population genetics to species
 invasion can help reconstruct invasion history and may promote more
 efficient management practice. We thus analyzed levels of genetic
 variation and population genetic structure of H. mantegazzianum in an
 invaded area of the western Swiss Alps as well as in its native range (the
 Caucasus), using eight nuclear microsatellite loci together with plastid
 DNA markers and sequences. On both nuclear and plastid genomes, native
 populations exhibited significantly higher levels of genetic diversity
 compared to invasive populations, confirming an important founder event
 during the invasion process. Invasive populations were also significantly
 more differentiated than native populations. Bayesian clustering analysis
 identified five clusters in the native range that corresponded to
 geographically and ecologically separated groups. In the invaded range,
 ten clusters occurred. Unlike native populations, invasive clusters were
 characterized by a mosaic pattern in the landscape, possibly caused by
 anthropogenic dispersal of the species via roads and direct collection for
 ornamental purposes. Lastly, our analyses revealed four main divergent
 groups in the western Swiss Alps, likely as a consequence of multiple
 independent establishments of H. mantegazzianum.
description: HMNinv_gen.txtGenotype data (Genepop format) for 8 microsatellite loci for 49 invasive populations of Heracleum mantegazzianum from the western Swiss Alps.HMNnative_gen.txtGenotype data (Genepop format) for 8 microsatellite loci for 11 native populations of Heracleum mantegazzianum from the Caucasus Mountains of Southwestern Russia.
DOI: 10.5061/dryad.pp1d41n
title: Data from: Behavioural mechanisms of sexual isolation involving multiple modalities and their inheritance

description: Speciation research dissects the genetics and evolution of reproductive
 barriers between parental species. Hybrids are the ‘gatekeepers’ of gene
 flow, so it is also important to understand the behavioural mechanisms and
 genetics of any potential isolation from their parental species. We tested
 the role of multiple behavioural barriers in reproductive isolation among
 closely related field crickets and their hybrids (Teleogryllus oceanicus
 and T. commodus). These species hybridise in the laboratory, but the
 behaviour of hybrids is unusual and there is little evidence for gene flow
 in the wild. We found that heterospecific pairs exhibited reduced rates of
 courtship behaviour due to discrimination by both sexes, and that this
 behavioural isolation was symmetrical. However, hybrids were not sexually
 selected against and exhibited high rates of courtship behaviour even
 though hybrid females are sterile. Using reciprocal hybrid crosses, we
 characterized patterns of interspecific divergence and inheritance in key
 sexual traits that might underlie the mating patterns we found: calling
 song, courtship song and cuticular hydrocarbons (CHCs). Song traits
 exhibited both sex-linkage and transgressive segregation, whereas CHCs
 exhibited only the latter. Calculations of the strength of isolation
 exerted by these sexual traits suggest that close-range signals are as
 important as long-distance signals in contributing to interspecific sexual
 isolation. The surprisingly weak mating barriers observed between hybrids
 and parental species highlights the need to examine reproductive isolating
 mechanisms and their genetic bases across different potential stages of
 introgressive hybridisation.
description: Moran et al. 2019
 [Calling song]Moran et al. 2019
 [CHCs]Moran et al. 2019 [Close
 range behaviour]Moran et al. 2019
 [Courtship song]
DOI: 10.5061/dryad.fs4hh
title: Data from: Different effects of paternal trans-generational immune priming on survival and immunity in step and genetic offspring

description: Paternal trans-generational immune priming, whereby fathers provide immune
 protection to offspring, has been demonstrated in the red flour beetle
 Tribolium castaneum exposed to the insect pathogen Bacillus thuringiensis.
 It is currently unclear how such protection is transferred, as in contrast
 to mothers, fathers do not directly provide offspring with a large amount
 of substances. In addition to sperm, male flour beetles transfer seminal
 fluids in a spermatophore to females during copulation. Depending on
 whether paternal trans-generational immune priming is mediated by sperm or
 seminal fluids, it is expected to either affect only the genetic offspring
 of a male, or also their step offspring that are sired by another male. We
 therefore conducted a double-mating experiment and found that only the
 genetic offspring of an immune primed male show enhanced survival upon
 bacterial challenge, while phenoloxidase activity, an important insect
 immune trait, and the expression of the immune receptor PGRP were
 increased in all offspring. This indicates that information leading to
 enhanced survival upon pathogen exposure is transferred via sperm, and
 thus potentially constitutes an epigenetic effect, whereas substances
 transferred with the seminal fluid could have an additional influence on
 offspring immune traits and immunological alertness.
description: Data for survival /
 phenoloxidase activity / fecundity / Gene expressionThe excel sheet contains
 all data of the publication. The different sheets are named corresponding
 to the assays of the publication.Data.xlsx
DOI: 10.5061/dryad.41hk5
title: Data from: Marmoset monkeys evaluate third-party reciprocity

description: Many non-human primates have been observed to reciprocate and to
 understand reciprocity in one-to-one social exchanges. A recent study
 demonstrated that capuchin monkeys are sensitive to both third-party
 reciprocity and violation of reciprocity; however, whether this
 sensitivity is a function of general intelligence, evidenced by their
 larger brain size relative to other primates, remains unclear. We
 hypothesized that highly pro-social primates, even with a relatively
 smaller brain, would be sensitive to others' reciprocity. Here, we
 show that common marmosets discriminated between human actors who
 reciprocated in social exchanges with others and those who did not.
 Monkeys accepted rewards less frequently from non-reciprocators than they
 did from reciprocators when the non-reciprocators had retained all food
 items, but they accepted rewards from both actors equally when they had
 observed reciprocal exchange between the actors. These results suggest
 that mechanisms to detect unfair reciprocity in third-party social
 exchanges do not require domain-general higher cognitive ability based on
 proportionally larger brains, but rather emerge from the cooperative and
 pro-social tendencies of species, and thereby suggest this ability evolved
 in multiple primate lineages.
description: Marmoset_data_csvRaw data of each sessionSchematic_Representation_ExchangeSchematic illustration of the exchange
DOI: 10.5061/dryad.5vd3q
title: Data from: Phylogeography of the Australian freshwater turtle Chelodina expansa reveals complex relationships among inland and coastal bioregions

description: We examined range-wide mitochondrial phylogeographic structure in the
 riverine freshwater turtle Chelodina expansa to determine if this species
 exhibits deep genetic divergence between coastal and inland hydrological
 provinces as seen in co-distributed freshwater taxa. We sequenced two
 mitochondrial loci, genealogical relationships were assessed using a
 network approach, and relationships among biogeographic regions were
 tested using analyses of molecular variance. Population history was
 evaluated using neutrality tests, indices of demographic expansion, and
 mismatch analyses. Twenty one haplotypes were recovered across two
 mitochondrial haplogroups separated by ca 4% nucleotide divergence. The
 haplogroups have discrete geographic boundaries but only partially support
 a hypothesis of deep divergence between coastal and inland bioregions. The
 first haplogroup comprises populations from the inland Murray-Darling
 Basin and from coastal catchments south of the Mary River in southeast
 Queensland. The second haplogroup comprises populations from coastal
 catchments north of the Mary River. Cryptic phylogeographic barriers
 separating adjacent coastal populations are congruent with those
 demonstrated for other freshwater taxa and may result from the combined
 influences of the Conondale Range and alluvial deposits at the mouth of
 the Mary River. Our study demonstrates that freshwater taxa commonly
 display genetic differentiation within a biogeographic region where no
 boundaries have been recognised, highlighting the need to uncover cryptic
 microbiogeographic regions to aid conservation of freshwater biota.
description: BEAST_CE_hapsBEAST analysis file used to estimate timing of molecular divergence between major haplogroups.Arlequin_CE_haps_by_catchmentThe mitochondrial ND4, tRNA-Pro, and control region data of Chelodina expansa in Arlequin format. Data are grouped by major catchments.Network_CE_n164_variablesites_gapsexcludedMitochondrial data of Chelodina expansa in the Network format (version 4.610; Fluxus Technology Ltd), used to create the median-joining haplotype network in Figure 1.
DOI: 10.5281/zenodo.18297251
title: Magnon squeezing in the quantum regime

description: Data for "Magnon squeezing in the quantum regime".

See "readme" for detailed information.
DOI: 10.5281/zenodo.18297252
title: Magnon squeezing in the quantum regime

description: Data for "Magnon squeezing in the quantum regime".

See "readme" for detailed information.
DOI: 10.5061/dryad.sg7k2
title: Data from: Sexual harassment induces a temporary fitness cost but does not constrain the acquisition of environmental information in fruit flies

description: Across animals, sexual harassment induces fitness costs for females and
 males. However, little is known about the cognitive costs involved, i.e.
 whether it constrains learning processes, which could ultimately affect an
 individual's fitness. Here we evaluate the acquisition of
 environmental information in groups of fruit flies challenged with various
 levels of male sexual harassment. We show that, although high sexual
 harassment induces a temporary fitness cost for females, all fly groups of
 both sexes exhibit similar levels of learning. This suggests that, in
 fruit flies, the fitness benefits of acquiring environmental information
 are not affected by the fitness costs of sexual harassment, and that
 selection may favour cognition even in unfavourable social contexts. Our
 study provides novel insights into the relationship between sexual
 conflicts and cognition and the evolution of female counterstrategies
 against male sexual harassment.
description: 1- data sheet learning
 performance biology lettersthis file includes the
 data used in our learning performance tests2-other
 experimentsThis is a 3-sheet excel
 file containing the data of the other three experiments included in the
 study: 1) the egg-laying test under different sexual harassment
 conditions; 2) the experiment testing how many female flies were on the
 correct oviposition medium during the sexual harassment assay; 3) the
 occurrence of sexual harassment during the assay
DOI: 10.5061/dryad.78084
title: Data from: Grazing decreases N partitioning among coexisting plant species

description: 1. Herbivores play a key role in shaping ecosystem structure and functions
 by influencing plant and microbial community composition and nutrient
 cycling. 2. This study investigated the long-term effects of herbivores on
 plant resource acquisition. We explored differences in the natural δ15N
 signatures in plant, microbial and soil N pools, and examined mycorrhizal
 colonization in two tundra sites that have been either lightly or heavily
 grazed by reindeer for more than 50 years. The study examined changes in
 nutrient acquisition in five common tundra plants with contrasting traits
 and mycorrhiza status; the mycorrhizal dwarf shrubs, Betula nana,
 Vaccinium myrtillus and Empetrum hermaphroditum; a mycorrhizal grass,
 Deschampsia flexuosa, and a non-mycorrhizal sedge, Carex bigelowii. 3.
 There were large variations in δ15N among coexisting plant species in the
 lightly grazed sites. This variation was dramatically reduced in the
 heavily grazed sites. At an individual species level, δ15N was higher in
 E. hermaphroditum and lower in C. bigelowii in the heavily grazed sites.
 Mycorrhizal colonization in B. nana and E. hermaphroditum roots were also
 lower in the heavily grazed sites. The δ15N signatures of the total soil N
 pool and of the microbial N pools were higher in the heavily grazed sites.
 4. Since the strong δ15N differentiation among plant species has been
 interpreted as a result of plants with different mycorrhizal types using
 different sources of soil nitrogen, we suggest that the lower variation in
 δ15N in heavily grazed sites indicates a lower niche differentiation in
 nitrogen uptake among plants. Reduced mycorrhiza-mediated nitrogen uptake
 by some of the species, a shift towards a more mineral nutrition due to
 higher nutrient turnover, and uptake of labile nitrogen from dung and
 urine in the heavily grazed sites could all contribute to the changes in
 plant δ15N. 5. We conclude that herbivores have the potential to influence
 plant nutrient uptake and provide the first data suggesting that
 herbivores decrease nutrient partitioning on the basis of chemical N forms
 among plant species. Reduced niche complementarity among species is
 potentially important for estimates of the effects of herbivory on plant
 nutrient availability and species coexistence.
description: Soil
 porpertiesSoil chemical analysis
 (soil extractable and microbial N + soil and microbial 15N) and soil
 microclimate (soil temperature and moisture) at the heavily and lightly
 grazed sitesPlant
 propertiesPlant chemical analysis
 (d13C, d15N, C and N content), plant biomass and mycorrhizal colonization
 at the heavily and lightly grazed sites. The studies plant species were
 Betula nana, Carex bigelowii, Deschampsia flexuosa, Empetrum
 hermaphroditum and Vaccinium myrtillusPlant.xlsxDung propertiesReindeer ung chemical analysis (d13C, d15N, C and N content)Dung.xls
DOI: 10.5061/dryad.jk636
title: Data from: Global phylogenetic structure of the hyperdiverse ant genus Pheidole reveals the repeated evolution of macroecological patterns

description: Adaptive radiations are of particular interest owing to what they reveal
 about the ecological and evolutionary regulation of biodiversity. This
 applies to localized island radiations such as Darwin's finches, and
 also to rapid radiations occurring on a global scale. Here we analyse the
 macroevolution and macroecology of Pheidole, a famously hyperdiverse and
 ecologically dominant ant genus. We generate and analyse four novel
 datasets: (i) a robust global phylogeny including 285 Pheidole species,
 (ii) a global database on regional Pheidole richness in 365 political
 areas summarizing over 97 000 individual records from more than 6500
 studies, (iii) a global database of Pheidole richness from 3796 local
 communities and (iv) a database of Pheidole body sizes across species.
 Analysis of the potential climate drivers of richness revealed that the
 patterns are statistically very similar across different biogeographic
 regions, with both regional and local richness associated with the same
 coefficients of temperature and precipitation. This similarity occurs even
 though phylogenetic analysis shows that Pheidole reached dominance in
 communities through serial localized radiations into different biomes
 within different continents and islands. Pheidole body size distributions
 have likewise converged across geographical regions. We propose these
 cases of convergence indicate that the global radiation of Pheidole is
 structured by deterministic factors regulating diversification and
 diversity.
description: Pheidole richness counts
 and other metadata used in the analysesThese files contain data
 used in the climate-richness regressions. The source of the richness data
 is the GABI (Global Ant Biodiversity Informatics) Database. For those
 interested in using these data for new research we strongly suggest you
 contact B. Guenard and/or E. Economo to access the latest datasets, as the
 database is continually being updated and improved. The file also includes
 metadata (climate, etc.) used in the analyses, the sources of these are
 described in the methods section of the paper.Economo_etal_data.xlsx
DOI: 10.5281/zenodo.18357417
title: Models Weights and Datasets for SpecBridge
DOI: 10.5281/zenodo.18357418
title: Models Weights and Datasets for SpecBridge
DOI: 10.5061/dryad.dj454vt
title: Data from: When beggars are choosers-How nesting of a solitary bee is affected by temporal dynamics of pollen plants in the landscape

description: Wild bees are declining in intensively farmed regions worldwide,
 threatening pollination services to flowering crops and wild plants. To
 halt bee declines, it is essential that conservation actions are based on
 a mechanistic understanding of how bee species utilize landscapes. We
 aimed to tease apart how foraging resources in the landscape through the
 nesting season affected nesting and reproduction of a solitary bee in a
 farmland region. We investigated how availability of floral resources and
 potentially resource‐rich habitats surrounding nests affected nest
 provisioning and reproduction in the solitary polylectic bee Osmia
 bicornis. The study was performed in 18 landscape sectors dominated by
 agriculture, but varying in agricultural intensity in terms of proportion
 of organic crop fields and seminatural permanent pastures. Pasture‐rich
 sectors contained more oak (Quercus robur), which pollen analysis showed
 to be favored forage in the early season. More oaks ≤100 m from nests led
 to higher proportions of oak pollen in nest provisions and increased speed
 of nest construction in the early season, but this effect tapered off as
 flowering decreased. Late‐season pollen foraging was dominated by
 buttercup (Ranunculus spp.), common in various noncrop habitats. Foraging
 trips were longer with more oaks and increased further through the season.
 The opposite was found for buttercup. Oak and buttercup interacted to
 explain the number of offspring; buttercup had a positive effect only when
 the number of oaks was above the mean for the studied sectors. The results
 show that quality of complex and pasture‐rich landscapes for O. bicornis
 depends on preserving existing and generating new oak trees. Lignose
 plants are key early‐season forage resources in agricultural landscapes.
 Increasing habitat heterogeneity with trees and shrubs and promoting
 suitable late‐flowering forbs can benefit O. bicornis and other wild bees
 active in spring and early summer, something which existing
 agri‐environment schemes seldom target.
description: Persson_etal_2018_EcolEvol_Osmia_tot_reprod3 Data for analyses of the nesting population and reproductive output of Osmia bicornis, 2008, Scania county, Sweden. Persson_etal_2018_EcolEvol_Osmia_buildspeed_20171215 Data for analyses of Osmia bicornis nest building speed. Persson_etal_2018_EcolEvol_Osmia_triptimes_20171214_trunc1800s Data for analyses of Osmia bicornis pollen foraging trip duration.   <strong>Persson_etal_2018_EcolEvol_Osmia_pollen_fig3.xlsx</strong>   Data on pollen use by Osmia bicornis - figure 3 in the 2018 published paper.
description: See paper for methods decription.
DOI: 10.15468/dl.kxgdzj
title: Occurrence Download

description: A dataset containing 104 records in GBIF matching the query:
SELECT
 '631' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 72.77152049497572
 AND decimalLatitude &lt;= 79.58564306880243
 AND decimalLongitude &gt;= -44.72439482211217
 AND decimalLongitude &lt;= -21.59990540065029
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 104 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001034-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.