cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/c0b8fef481d7bf2825341b3839b085a0
title: Physical environment of the Luquillo Forest Dynamics Plot (LFDP), Puerto Rico

description: This file contains data that describe the physical and environmental attributes of the LFDP. The attributes include elevation, topography type, and percentage slope. All data are given for the 20 m by 20 m quadrat scale. Information on soils are taken form an interpolation of the soil map produced by the Natural Resources Conservation Service, US Department of Agriculture (Soil Survey 1995). Other information from the elevation of each of the corner posts defining the quadrats.The National Science Foundation requires that data from projects it funds are posted on the web two years after any data set has been organized and â€œcleanedâ€. The data from each census of the LFDP will be updated at intervals as each survey of the LFDP shows errors in the previous data collection. After posting on the web, researchers who are not part of the project are then welcome to use the data. Given the enormous amount of time, effort and resources required to manage the LFDP, obtain these data, and ensure data accuracy, LFDP Principal Investigators request that researchers intending to use this data comply with the requests below. Through complying with these requests we can ensure that the data are interpreted correctly, analyses are not repeated unnecessarily, beneficial collaboration between users is promoted and the Principle Investigators investment in this project is protected.
DOI: 10.6084/m9.figshare.20341098.v1
title: COVID-19 Knowledge and symptoms July 13th.xlsx

description: The dataset is on knowledge, attitude and practices of young adolescents in a Nigerian university.
DOI: 10.6084/m9.figshare.21550662
title: Data Sheet with abbreviations

description: Data sheet showing the results obtained during the study.
DOI: 10.6084/m9.figshare.24153600
title: Raw data for "On the effects of turbulence modulation driven by suspended sediment stratification in emergent rigid canopies"

description: Raw data for "On the effects of turbulence modulation driven by suspended sediment stratification in emergent rigid canopies" by Ranjan and Tinoco, 2023
DOI: 10.15485/1866026
title: ESS-DIVE Reporting Format for Dataset Package Metadata

description: ESS-DIVE’s (Environmental Systems Science Data Infrastructure for a Virtual Ecosystem) dataset metadata reporting format is intended to compile information about a dataset (e.g., title, description, funding sources) that can enable reuse of data submitted to the ESS-DIVE data repository. The files contained in this dataset include instructions (dataset_metadata_guide.md and README.md) that can be used to understand the types of metadata ESS-DIVE collects. The data dictionary (dd.csv) follows ESS-DIVE’s file-level metadata reporting format and includes brief descriptions about each element of the dataset metadata reporting format. This dataset also includes a terminology crosswalk (dataset_metadata_crosswalk.csv) that shows how ESS-DIVE’s metadata reporting format maps onto other existing metadata standards and reporting formats.Data contributors to ESS-DIVE can provide this metadata by manual entry using a web form or programmatically via ESS-DIVE’s API (Application Programming Interface). A metadata template (dataset_metadata_template.docx or dataset_metadata_template.pdf) can be used to collaboratively compile metadata before providing it to ESS-DIVE.Since being incorporated into ESS-DIVE’s data submission user interface, ESS-DIVE’s dataset metadata reporting format, has enabled features like automated metadata quality checks, and dissemination of ESS-DIVE datasets onto other data platforms including Google Dataset Search and DataCite.
DOI: 10.15784/601652
title: Under ice trajectories for RAFOS enabled profiling floats in the Weddell Gyre

description: Trajectories for RAFOS enabled profiling floats created using the acoustic tracking software program Artoa4Argo. The floats were deployed in the Weddell Gyre on Polarstern Cruise ANTXXIV/3. The floats were part of the US ARGO Program and were deployed by the University of Washington (PI: Stephen Riser) to drift in the Weddell Gyre from 2008 to 2012.
DOI: 10.25625/cxmo3o
title: A03_Reki Meteo Data 2017 (2)

description: quality flag maximum soil temperature 3, 30 cm
DOI: 10.48670/moi-00180
title: GLOBAL OCEAN L4 SIGNIFICANT WAVE HEIGHT FROM NRT SATELLITE MEASUREMENTS
DOI: 10.5281/zenodo.10020010
title: Eddy activity in the Arctic Ocean projected to surge in a warming world

description: High resolution FESOM2 results used for Arctic Ocean eddy activity study, with Figure 1-5 in the article and Extended Data Figures included in the supplementary material.
DOI: 10.5281/zenodo.6571146
title: Argo Trajectories under ice (Southern Hemisphere, version 2022.05)

description: Argo floats sometimes sample under ice, and do not return a measured position. Here, we provide estimates of positions using the multiple-constraint method described by Oke et al. (2022). Each file includes longitude and latitude from GPS measurements when floats are not under ice. When floats are under ice, positions are estimated by linearly interpolating between known locations (the traditional approach used by the Argo community), and using constraints: potential vorticity, f/H; mean sea-level, and density at 1000 m. A merged trajectory is also included, but users might select their preferred estimate based on their understanding of the ocean circulation at the time of measurement. Oke, P. R., T. Rykova, G. S. Pilo, J. L. Lovell, 2022: Estimating Argo float trajectories under ice, Journal of Geophysical Research - Earth and Space Science, under review.
description: The adjustment function used here (to match the end-points) is a plane surface (used in step 2 of Oke et al. 2022). Files were generated in Matlab (version R2014b), and file names are "Version_TRAJ_WMOID.mat", where Version includes the year and month the files were created. Version number is 2022.05 indicates that files were created in May 2022. WMOID is the WMO ID of the Argo float.
DOI: 10.5281/zenodo.7845361
title: Multicenter dataset of neuroimaging features (part II)

description: The CSV file contains the cortical thickness (CT) and fractal dimension (FD) estimated from the brain MR T<sub>1</sub>-weighted images contained in the multicenter online repository <em>Information eXtraction from Images (IXI)</em> study. Each CSV file contains the following columns: Subject: id of each subject SITE: imaging site label (ABIDEI or ABIDEII followed by the institution name that collected the images; ICBM; NKI2) Age: each subject's age, expressed in years Sex: 0=male; 1=female. cortex_CT (FD): CT (or FD) of the cerebral cortical gray matter (GM). lh_cortex_CT (FD), rh_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM. lh_frontal_cortex_CT (FD), rh_frontal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the frontal lobe. lh_temporal_cortex_CT (FD), rh_temporal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the temporal lobe. lh_parietal_cortex_CT (FD), rh_parietal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the parietal lobe. lh_occipital_cortex_CT (FD), rh_occipital_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the occipital lobe.
description: {"references": ["Marzi, C., Giannelli, M., Barucci, A., Tessa, C., Mascalchi, M., & Diciotti, S. (2022). Efficacy of MRI data harmonization in the age of machine learning. A multicenter study across 36 datasets. arXiv preprint arXiv:2211.04125."]}
DOI: 10.5281/zenodo.8300923
title: Dataset used in article "A 2-dimensional guillotine cutting stock problem with variable-sized stock for the honeycomb cardboard industry"

description: The dataset presented is part of the one used in the article "A 2-dimensional guillotine cutting stock problem with variable-sized stock for the honeycomb cardboard industry" by P. Terán-Viadero, A. Alonso-Ayuso and F. Javier Martín-Campo, submitted for publication (2023). In the paper mentioned above, currently under revision, two mathematical optimisation models are proposed for the Cutting Stock Problem in the honeycomb cardboard sector. This problem appears in a Spanish company and the models proposed have been tested with real orders received by the company, achieving a reduction of up to 50% in the leftover generated. The dataset presented here includes six of the twenty cases used in the paper (the rest cannot be presented for confidentiality reasons). For each case, the characteristics of the order and the solution obtained by the two models are provided for the different scenarios analysed in the paper. *Version 1.1 contains the same data but renamed according to the instances name in the final version of the article.
DOI: 10.15485/1734840
title: ESS-DIVE Reporting Format for File-level Metadata

description: The ESS-DIVE reporting format for file-level metadata (FLMD) provides granular information at the data file level to describe the contents, scope, and structure of the data file to enable comparison of data files within a data package. The FLMD are fully consistent with and augment the metadata collected at the data package level. We developed the FLMD template based on a review of a small number of existing FLMD in use at other agencies and repositories with valuable input from the Environmental Systems Science (ESS) Community. Also included is a template for a CSV Data Dictionary where users can provide file-level information about the contents of a CSV data file (e.g., define column names, provide units). Files are in .csv, .xlsx, and .md. Templates are in both .csv and .xlsx (open with e.g. Microsoft Excel, LibreOffice, or Google Sheets). Open the .md files by downloading and using a text editor (e.g. Notepad or TextEdit). Though we provide Excel templates for the file-level metadata reporting format, our instructions encourage users to 'Save the FLMD template as a CSV following the CSV Reporting Format guidance'. In addition, we developed the ESS-DIVE File Level Metadata Extractor which is a lightweight python script that can extract some FLMD fields following the recommended FLMD format and structure.
DOI: 10.25318/9810003001-eng
title: Broad age groups, gender and census year: Canada, provinces and territories, census metropolitan areas and census agglomerations with parts

description: Data on broad age groups and gender for the population of Canada, provinces and territories, census metropolitan areas and census agglomerations, 2021 and 2016 censuses.
DOI: 10.5063/3j3bc3
title: A global synthesis and meta-analysis of net capture abundance and richness detection rates as an index of sampling effort, 2021.

description: 292 full-text articles were reviewed for a measure of richness or diversity, the number of captures and/or duration of camera trapping (i.e. days). Data were extracted from article text or table. Variables such as the location of study, number of cameras, sites, and ecosystem were also recorded. Only studies in English were considered. Studies focusing on a particular species or a group of species ignoring other recorded species were excluded.
DOI: 10.5281/zenodo.2789675
title: Popillia japonica ̶ Pest Report and Datasheet to support ranking of EU candidate priority pests

description: These two files are part of the outputs produced under the mandate M-2017-0056 of the European Commission requesting EFSA for technical assistance in the field of quarantine pests qualifying as priority pests as by Article 6(2) of the Regulation (EU) 2016/2031 <em>on protective measures against pests of plants</em>. Under the mandate EFSA produced: i) 1 methodology report (DOI available at the field "Related/alternate identifiers"), ii) 28 datasheets, one for each of the 28 candidate pests, and iii) 28 pest reports supporting the information provided in the datasheets. EFSA wishes to acknowledge the contribution of Giovanni Bosio, Mariangela Ciampitti, Dirkjan van der Gaag to the EKE and the review conducted by Chris MacQuarrie.
description: EU; XLS; alpha@efsa.europa.eu
DOI: 10.5281/zenodo.7845311
title: Multicenter dataset of neuroimaging features (part I)

description: The CSV file contains the cortical thickness (CT) and fractal dimension (FD) estimated from the brain MR T<sub>1</sub>-weighted images contained in the following online repositories: Autism Brain Imaging Data Exchange (ABIDE) 1000 Functional Connectomes Project (FCP) – ICBM dataset Consortium for Reliability and Reproducibility (CoRR) - <em>NKI 2 - Nathan Kline Institute (Milham)</em> Each CSV file contains the following columns: Subject: id of each subject SITE: imaging site label (ABIDEI or ABIDEII followed by the institution name that collected the images; ICBM; NKI2) Age: each subject's age, expressed in years Sex: 0=male; 1=female. cortex_CT (FD): CT (or FD) of the cerebral cortical gray matter (GM). lh_cortex_CT (FD), rh_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM. lh_frontal_cortex_CT (FD), rh_frontal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the frontal lobe. lh_temporal_cortex_CT (FD), rh_temporal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the temporal lobe. lh_parietal_cortex_CT (FD), rh_parietal_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the parietal lobe. lh_occipital_cortex_CT (FD), rh_occipital_cortex_CT (FD): CT (or FD) of the left (lh) and right (rh) cerebral cortical GM of the occipital lobe.
description: {"references": ["Marzi, C., Giannelli, M., Barucci, A., Tessa, C., Mascalchi, M., & Diciotti, S. (2022). Efficacy of MRI data harmonization in the age of machine learning. A multicenter study across 36 datasets. arXiv preprint arXiv:2211.04125."]}
DOI: 10.6084/m9.figshare.11627406
title: Metadata record for: INVACOST, a public database of the economic costs of biological invasions worldwide

description: This dataset contains key characteristics about the data described in the Data Descriptor INVACOST, a public database of the economic costs of biological invasions worldwide. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.15468/fp8atw
title: A Checklist in Gutianshan 24ha Forest Plot, Zheijang, China

description: The checklist contains 159 species in Gutianshan forest plot, with the informations about taxonID, scientificName, scientificNameAuthorship and taxonRank.
DOI: 10.5281/zenodo.4293769
title: Photogrammetry dataset for two Bronze Age human teeth from Monte do Vale do Ouro 2 (Ferreira do Alentejo, Portugal)

description: This photogrammetry dataset that accompanies the publication: "The embodiment of craft production in Bronze Age Portugal: Exceptional dental wear grooves in an individual from Monte do Vale do Ouro 2 (Ferreira do Alentejo, Portugal)" by John Charles Willman, António Carlos Valera, and Ana Maria Silva in the International Journal of Osteoarchaeology, 31(2):252-262. https://doi.org/10.1002/oa.2944. Includes photographs of a left and right mandibular lateral incisor (I2) with profound dental wear grooves on their lingual root surfaces. 3D models and texture files also included.

Part of the “VAPP” Project (Virtual Anthropology of Prehistoric Portugal, Marie Skłodowska-Curie Actions Individual Fellowship, H2020-MSCA-IF-2018, No. 839822).
DOI: 10.5281/zenodo.4293770
title: Photogrammetry dataset for two Bronze Age human teeth from Monte do Vale do Ouro 2 (Ferreira do Alentejo, Portugal)

description: This photogrammetry dataset that accompanies the publication: "The embodiment of craft production in Bronze Age Portugal: Exceptional dental wear grooves in an individual from Monte do Vale do Ouro 2 (Ferreira do Alentejo, Portugal)" by John Charles Willman, António Carlos Valera, and Ana Maria Silva in the International Journal of Osteoarchaeology, 31(2):252-262. https://doi.org/10.1002/oa.2944. Includes photographs of a left and right mandibular lateral incisor (I2) with profound dental wear grooves on their lingual root surfaces. 3D models and texture files also included.

Part of the “VAPP” Project (Virtual Anthropology of Prehistoric Portugal, Marie Skłodowska-Curie Actions Individual Fellowship, H2020-MSCA-IF-2018, No. 839822).
DOI: 10.25345/c55718005
title: MassIVE MSV000093908 - Phospho_proteomics_of_Human_Lung_Cancer
title: These TiO2 phospho-enriched patient samples were run at the ISTA LSF MS facility in Klotserneuburg, Austria, for Lilla Turiak and Fanni Bugyi.
DOI: 10.15151/esrf-es-1409737459
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryo-EM in the Italian Structural Biology community, as in Italy there is no top-end instrument available. The groups in this application have acquired know-how in cryo.EM through international collaborations or by acquiring medium-level in-house equipment. Access to the CM01 beamline at the ESRF has been instrumental for the achievement of high-profile scientific results and publications in top journals. Presently three screening microscopes are available in Italy, these instruments will boost sample production and the number of applications to CM01. Given these premises a BAG from Italian institutions could ensure timely data collection, nurturing the expansion of the field in Italy and a high-level scientific production.
DOI: 10.57745/4qwc72
title: SAA_metadata.txt

description: Description of the file SAA_data.txt
DOI: 10.57745/ss69gn
title: SDC_metadata.txt

description: Description of the file SDC_data.txt
DOI: 10.57745/xa26ki
title: SDC_data.txt

description: Variables describing the cropping systems
DOI: 10.57745/r7uohc
title: SAA_data.txt

description: Variables describing the SAA
DOI: 10.17632/7ydfs62gd6.3
title: Data for report "Artificial Intelligence: How knowledge is created, transferred, and used"

description: There are the underlying data for our report "Artificial Intelligence: How knowledge is created, transferred, and used", published 2018. Data can be used to construct the graphs used in the report.
DOI: 10.5281/zenodo.7995353
title: Microcomputed tomography dataset of a Late Neolithic human parietal bone from Megalitho da Capella (Figueira da Foz, Portugal)

description: Fragment of right parietal bone from a Late Neolithic individual published in: Willman JC, Coutinho Nogueira D, and Silva AM. Rassessing trauma in a Late Neolithic cranium from Megalitho da Capella (Figueira da Foz, Portugal). Anthropologischer Anzeiger. DOI: 10.1127/anthranz/2024/1771. 

Spacing (cm)x: 0.00943997y: 0.00943997z: 0.00943997
DOI: 10.5281/zenodo.7995354
title: Microcomputed tomography dataset of a Late Neolithic human parietal bone from Megalitho da Capella (Figueira da Foz, Portugal)

description: Fragment of right parietal bone from a Late Neolithic individual published in: Willman JC, Coutinho Nogueira D, and Silva AM. Rassessing trauma in a Late Neolithic cranium from Megalitho da Capella (Figueira da Foz, Portugal). Anthropologischer Anzeiger. DOI: 10.1127/anthranz/2024/1771. 

Spacing (cm)x: 0.00943997y: 0.00943997z: 0.00943997
DOI: 10.5281/zenodo.10559670
title: Evaluation of non-invasive dsRNA delivery methodsfor the development of RNA interference in theAsian tiger mosquito Aedes albopictus

description: Abstract

The Asian tiger mosquito Aedes albopictus is one of the most invasive species and an efficient vector of several pathogens. RNA interference (RNAi) has been proposed as an alternative method to control mosquito populations by silencing the expression of genes that are essential for their survival. However, the optimal delivery method for dsRNAs to enhance an optimal RNAi remains elusive and comparative studies are lacking. We have, therefore, compared the efficiency of three non-invasive delivery methods to mosquito larvae: soaking, rehydration and nanoparticle ingestion. Each method was tested separately on four genes predicted to code non-essential proteins (i.e. collagenase-like, kynurenine 3-monooxygenase-like, yellow-like and venom serine protease-like) in order to be able to compare the importance of gene knock-down. 

All tested methods successfully downregulated mosquito gene expression. However, silencing efficiency strongly varies among methods and genes. Silencing (95.1%) was higher for Kynurenine 3-monooxygenase-like with rehydration and nanoparticle ingestion (61.1%). For the Venom serine protease-like, the most efficient silencing was observed with soaking (74.5%) and rehydration (34%). In contrast, the selected methods are inefficient to silence the other genes. Our findings also indicate that gene copy numbers, transcript sizes and GC content correlate with the silencing efficiency. 

From our results, rehydration was the most specific and efficient methods to specifically knock-down gene expression in Ae. albopictus larvae. Nevertheless, considering the observed variability of efficiency is gene-dependent, our results also point at the necessity to test and optimize diverse dsRNA delivery approaches to achieve a maximal RNAi efficiency.
DOI: 10.5281/zenodo.10559671
title: Evaluation of non-invasive dsRNA delivery methodsfor the development of RNA interference in theAsian tiger mosquito Aedes albopictus

description: Abstract

The Asian tiger mosquito Aedes albopictus is one of the most invasive species and an efficient vector of several pathogens. RNA interference (RNAi) has been proposed as an alternative method to control mosquito populations by silencing the expression of genes that are essential for their survival. However, the optimal delivery method for dsRNAs to enhance an optimal RNAi remains elusive and comparative studies are lacking. We have, therefore, compared the efficiency of three non-invasive delivery methods to mosquito larvae: soaking, rehydration and nanoparticle ingestion. Each method was tested separately on four genes predicted to code non-essential proteins (i.e. collagenase-like, kynurenine 3-monooxygenase-like, yellow-like and venom serine protease-like) in order to be able to compare the importance of gene knock-down. 

All tested methods successfully downregulated mosquito gene expression. However, silencing efficiency strongly varies among methods and genes. Silencing (95.1%) was higher for Kynurenine 3-monooxygenase-like with rehydration and nanoparticle ingestion (61.1%). For the Venom serine protease-like, the most efficient silencing was observed with soaking (74.5%) and rehydration (34%). In contrast, the selected methods are inefficient to silence the other genes. Our findings also indicate that gene copy numbers, transcript sizes and GC content correlate with the silencing efficiency. 

From our results, rehydration was the most specific and efficient methods to specifically knock-down gene expression in Ae. albopictus larvae. Nevertheless, considering the observed variability of efficiency is gene-dependent, our results also point at the necessity to test and optimize diverse dsRNA delivery approaches to achieve a maximal RNAi efficiency.
DOI: 10.17028/rd.lboro.21378069
title: Dataset for Associations between hearing loss and cognitive test performance: does modality matter?

description: This study examined whether modality is a factor to consider in the association between hearing loss and cognitive test performance. This dataset reflects:
- a virtual (video-call) observational study be used to assess the associations between hearing difficulty (measured by the hearWHO app)
- physical activity (verbally asked)
- cognition (measured by three cognitive assessments)