cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2m8qcf
title: Occurrence Download

description: A dataset containing 2981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glebionis segetum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2981 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009753-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vcsgv
title: Occurrence Download

description: A dataset containing 119239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, 28eb1a3f-1c15-4a95-931a-4af90ecb574d)",
 "TaxonKey is Cornu aspersum",
 "Year 1000-2026"
 ]
}

 The dataset includes 119239 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003188-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxnzpz
title: Occurrence Download

description: A dataset containing 2130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.51162 48.48442,0.56856 48.48368,0.56856 48.51655,0.51357 48.51636,0.51162 48.48442))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2130 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003185-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.4mw6m90d7
title: Ocular lens morphology is influenced by ecology and metamorphosis in frogs and toads

description: The shape and relative size of an ocular lens affects the focal length of
 the eye, with consequences for visual acuity and sensitivity. Lenses are
 typically spherical in aquatic animals with camera-type eyes and axially
 flattened in terrestrial species to facilitate vision in optical media
 with different refractive indices. Frogs and toads (Amphibia: Anura) are
 ecologically diverse, with many species shifting from aquatic to
 terrestrial ecologies during metamorphosis. We quantified lens shape and
 relative size using 179 microCT scans of 126 biphasic anuran species and
 tested for correlations with life stage, environmental transitions, adult
 habits and adult activity patterns. Across broad phylogenetic diversity,
 tadpole lenses are more spherical than those of adults. Biphasic species
 with aquatic larvae and terrestrial adults typically undergo ontogenetic
 changes in lens shape, whereas species that remain aquatic as adults tend
 to retain more spherical lenses after metamorphosis. Further, adult lens
 shape is influenced by adult habit; notably, fossorial adults tend to
 retain spherical lenses following metamorphosis. Finally, lens size
 relative to eye size is smaller in aquatic and semiaquatic species than
 other adult ecologies. Our study demonstrates how ecology shapes visual
 systems, and the power of non-invasive imaging of museum specimens for
 studying sensory evolution.
description: This dataset includes measurements of the eyes and lenses of
 anuran amphibians. All measurements were collected from CT scans of frogs
 and tadpoles from fluid-preserved natural history collections. Raw scan
 data have been uploaded to MorphoSource (https://www.morphosource.org/) and unique identification numbers for these media are included in the dataset. Please see the scientific paper associated with this dataset for details on the methods used to collect data and the interpretation of the shape metrics reported.
DOI: 10.5061/dryad.jsxksn0cv
title: Cape ground squirrel site comparison dataset

description: Male mating strategies respond to female availability such that variation
 in resources that affect spatial distribution can also alter cost-benefit
 tradeoffs within a population. In arid-adapted species, rainfall alters
 reproduction, behavior, morphology, and population density such that
 populations differing in resource availability may also differ in
 successful reproductive strategies. Here we compare two populations of
 Cape ground squirrels (Xerus inauris), a sub-Saharan species with
 year-round breeding and intense mating competition. Unlike most mammals
 where males resort to aggressive interactions over females, male X.
 inauris are tolerant of one another, relying instead on other
 non-aggressive pre- and post-copulatory strategies to determine
 reproductive success. Our findings suggest that differences in resource
 availability affect female distribution which ultimately leads to
 intraspecific variation in male reproductive tactics and sexual
 morphology. Sperm competition, assessed by reproductive morphometrics, was
 more pronounced in our high resource site where females were distributed
 evenly across the landscape whereas dominance seemed to be an important
 determinant of success in our low resource site where females were more
 aggregated. Both sites had similar mating intensities, and most males did
 not sire any offspring. However, our low resource site had a higher
 variance in fertilization success with fewer males siring multiple
 offspring compared to our high resource site where more individuals were
 successful. Our results lend support to resource models where variations
 in female spatial distribution attributed to environmental resources
 ultimately impact male reproductive behaviors and morphology.
DOI: 10.5061/dryad.pg4f4qrsw
title: Radial topographies of biofilm colonies

description: During the biofilm life cycle, bacteria attach to a surface and then
 reproduce, forming crowded, growing communities. Difficulties in
 accurately measuring biofilm height across relevant time and length scales
 have prevented testing diverse biophysical models empirically. Using white
 light interferometry, we measure the heights of microbial colonies with
 nanometer precision from inoculation to their final equilibrium height,
 producing a novel and detailed empirical characterization of vertical
 growth dynamics. This dataset corresponds to the profiles of developing
 biofilms, measured through white-light interferometry. This dataset
 represents novel high-resolution characterizations of developing biofilms
 in the vertical direction, empirical measurements that can be utilized to
 test models for biofilm development, ranging from bulk-dynamics to surface
 fluctuations. 
description: Measurements represent novel topographic measurements with 1
 nanometer resolution in the z axis, and 0.2 micrometers in plane of
 developing biofilms. Time between measurements allows the study of short
 and long time scales (10 minutes to 14 days) of a diverse cohort of 
 microorganisms (<em>Aeromonas veronii, Escherichia coli,</em>
 Saccharomyces <em>cerevisiae, Vibrio cholerae, Klebsiella
 pneumoniae, Bacillus cereus, Staphylococcus aureus</em>).
 Data was obtained using a Zygo ZeGage Pro Optical Profilometer,
 using the 1000x200@800Hz measuring mode, across the width of the colony.
 Images were then averaged over the 200 pixels in the y-direction (~32μm),
 and background from the growing substrate was removed.
  We also provide scripts for fitting and evaluating vertical
 growth dynamics using diverse biophysical models. 
description: All interferometric measurements are provided in csv format. For
 a detailed description of the files refer to the README.md document and
 the accompanying article.  For analysis and topography
 analysis scripts: - Python for cleaning script, and
 loading sample .datx data. - Julia for differential
 equation modeling, and parameter optimization.
DOI: 10.5281/zenodo.18302176
title: TEACH-er Literature Review Dataset

description: Alongside academic publications, the TEACH-er review examined a selection of 43 grey literature resources, including guidelines, networks, policy statements and international frameworks specifically related to research ethics. This database has been compiled as an Open Access resource for scholars interested in Education Research Ethics.
DOI: 10.5281/zenodo.18302177
title: TEACH-er Literature Review Dataset

description: Alongside academic publications, the TEACH-er review examined a selection of 43 grey literature resources, including guidelines, networks, policy statements and international frameworks specifically related to research ethics. This database has been compiled as an Open Access resource for scholars interested in Education Research Ethics.
DOI: 10.5061/dryad.rbnzs7hdt
title: Changes in trait covariance along an orographic moisture gradient reveal the relative importance of light- and moisture-driven trade-offs in subtropical rainforest communities

description: • A range of functional trait-based approaches have been developed to
 investigate community assembly processes, but most ignore how traits
 covary within communities.  • We combined existing approaches
 (community-weighted means [CWMs] and functional dispersion [FDis]) with a
 metric of trait covariance to examine assembly processes in five
 angiosperm assemblages along a moisture gradient in Australia’s
 subtropics. In addition to testing hypotheses about habitat filtering
 along the gradient, we hypothesised that trait covariance would be
 strongest at both ends of the moisture gradient and weakest in the middle,
 reflecting trade-offs associated with light capture in productive sites
 and moisture stress in dry sites. • CWMs revealed evidence of climatic
 filtering, but FDis patterns were less clear. As hypothesised, trait
 covariance was weakest in the middle of the gradient, but unexpectedly
 peaked at the second driest site due to the emergence of a clear drought
 tolerance – drought avoidance spectrum. At the driest site, the same
 spectrum was truncated at the ‘avoider’ end, revealing important
 information about habitat filtering in this system. • Our focus on trait
 covariance revealed the nature and strength of trade-offs imposed by light
 and moisture availability, and complemented insights gained about
 community assembly from existing trait-based approaches. 
description: R version 4.1.1
DOI: 10.5061/dryad.rfj6q57dq
title: Genetic and transcriptomic datasets characterizing gene drive mosquitoes expressing antimicrobial peptides that retard Plasmodium sporogonic development

description: Gene drives hold promise for the genetic control of malaria vectors. The
 development of vector population modification strategies hinges on the
 availability of effector mechanisms impeding parasite development in
 transgenic mosquitoes. We augmented a midgut gene of the malaria mosquito
 Anopheles gambiae to secrete two exogenous antimicrobial peptides,
 Magainin 2 and Melittin. This small genetic modification, capable of
 efficient non-autonomous gene drive, hampers oocyst development in both
 Plasmodium falciparum and Plasmodium berghei. It delays the release of
 infectious sporozoites while it simultaneously reduces the lifespan of
 homozygous female transgenic mosquitoes. Modeling the spread of this
 modification using a large-scale agent-based model of malaria epidemiology
 reveals that it can break the cycle of disease transmission across a range
 of transmission intensities.
DOI: 10.15468/dl.zf77ku
title: Occurrence Download

description: A dataset containing 5410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND.11.32_1",
 "OccurrenceStatus is Present",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530",
 "TaxonKey is one of (Spatula clypeata, Anas acuta, Aythya ferina, Phoenicopterus roseus, Fulica atra, Hydrophasianus chirurgus, Recurvirostra avosetta, Limosa limosa, Tringa totanus, Gelochelidon nilotica, Ardea cinerea, Platalea leucorodia, Falco tinnunculus, Oenanthe deserti)",
 "Year 2015-2026"
 ]
}

 The dataset includes 5410 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003186-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8sf7m0crz
title: Data for: European mushroom assemblages are phylogenetically structured by temperature

description: Recent global warming affects species compositions at an unprecedented
 rate. To predict climate-induced changes in species assemblages, a better
 understanding of the link between species occurrence and climate is
 needed. Macrofungal fruit body assemblages are correlated with the thermal
 environment at the European scale. However, it is still unknown whether
 macrofungal communities are also phylogenetically structured by thermal
 environments. Thermal environments are characterized by annual temperature
 means but also by intra-annual temperature variability (hereafter termed
 temperature seasonality), which are both considered in this study. Here,
 we used distribution data of 2,882 species based on fruit body records
 across Europe to address two main questions: (i) Are mushroom assemblages
 at the extremes of the mean (warm and cold) and seasonal (high
 intra-annual variability, i.e. continental) climate gradient
 phylogenetically more similar than expected (phylogenetic alpha
 diversity); (ii) are mushroom assemblages, that are subject to different
 mean and seasonal temperature conditions, composed of different lineages
 (phylogenetic beta diversity). Our phylogenetic alpha diversity analysis
 shows that mushroom assemblages are phylogenetically structured by warm
 and cold environments, indicating that phylogenetically related species
 with similar traits thrive under more extreme conditions. In contrast,
 assemblages are phylogenetically more dissimilar (overdispersed) in
 temperature seasonal environments, indicating limiting similarity.
 Phylogenetic beta diversity was significantly correlated with mean and
 seasonal temperature differences, a response mainly driven by a few
 genera. Our results show that macrofungal assemblages are phylogenetically
 structured by temperature across Europe, suggesting phylogenetically
 constrained specialization towards temperature extremes. Predicted
 anthropogenic warming is likely to affect species composition and
 phylogenetic diversity with additional consequences for the carbon- and
 nutrient cycles.
DOI: 10.5061/dryad.8gtht76s2
title: Comparative phylogeography of two commensal rat species (Rattus tanezumi and R. norvegicus) in China: Insights from mitochondiral DNA, microsatellite and RADseq

description: Rattus norvegicus and Rattus tanezumi are dominant
 species of Chinese house rats, but the colonization and demographic
 history of two species in China have not been thoroughly explored.
 Phylogenetic analyses with mitochondrial DNA including 486 individuals
 from 31 localities revealed that R. norvegicus is widely
 distributed in China, R. tanezumi is mainly distributed
 in southern China with currently invading northward; northeast China was
 the natal region of R. norvegicus, while the spread
 of R. tanezumi in China most likely started from the southeast
 coast. A total of 123 individuals from 18 localities were subjected to
 2b‐RAD analyses. In the neighbor‐joining tree, individuals of R.
 tanezumi grouped into geographic‐specific branches, and populations from
 the southeast coast were ancestral groups, which confirmed the
 colonization route from the southeast coast to central and western China.
 However, individuals of R. norvegicus were generally grouped into two
 clusters instead of geographic‐specific branches. One cluster comprised
 inland populations, and another cluster included both southeast coast and
 inland populations, which indicated that the spread history of R.
 norvegicus in China was complex; in addition to on‐land colonization,
 shipping transportation also played a great role. ADMIXTURE and principal
 component analyses provided further supports for the colonization history.
 Demographic analyses revealed that climate changes at ~40,000 to
 18,000 years ago and ~4000 years ago had led to population declines of
 both species; the R. norvegicus declined rapidly while the
 population of R. tanezumi continuously expanded since ~1500 years
 ago, indicating the importance of interspecies' competition in their
 population size changes. Our study provided a valuable framework for
 further investigation of phylogeography of two species in China.
description: Microsatellite, 2b-RAD
description: *.fq.tz  Contains raw sequence
 data. str2.xlsx 
 Microsatellite data 
 Filename  Consist with str2.xlsx
 Filename 
 Abbreviation of Sample Location
DOI: 10.5061/dryad.70rxwdc1g
title: Dating the origin and spread of plastids and chromatophores

description: Photosynthetic eukaryotes have shaped the Earth's biosphere by
 producing oxygen and converting light into organic compounds in
 specialized organelles called plastids. Plastids evolved from free-living
 cyanobacteria ingested by heterotrophic unicellular eukaryotes. Two such
 independent engulfment processes, called cyanobacterial endosymbioses,
 have been reported so far. The first gave rise to primary plastids and
 three Archaeplastida lineages: glaucophytes, red algae and green algae
 with land plants, whereas the second resulted in chromatophores in the
 rhizarian amoeba Paulinella. Importantly, archaeplastidans donated their
 plastids to many protist groups, thereby further spreading photosynthesis
 across the tree of life. To reveal the complex plastid evolution, we
 performed comprehensive phylogenetic and multi-clock analyses based on new
 fossil calibration points and the greatest number yet of plastid-encoded
 proteins from 108 taxa, representing a large diversity of photosynthetic
 organisms. Our results indicate that primary plastids evolved prior to 2.1
 - 1.8 Ba, i.e. before glaucophytes diverged from the other
 archaeplastidans, and Paulinella chromatophores most probably before 292 -
 266 Ma. Red and green algae were engulfed by cryptophyte and
 chlorarachniophyte ancestors between 1.7 - 1.4 Ba, and 1.1 - 1.0
 Ba, respectively; the former subsequently triggered plastid transfers to
 other eukaryotes. We also studied the impact of various molecular clocks
 and calibration sets on the age estimation and clearly indicate that the
 clocks are the source of greater differences.
description: Please see the README document ("README.txt ") and the
 SUPPLEMENTARY MATERIALS file (“Supplementary_Information.docx”).
description: Please see the README document ("README.txt ") and the
 SUPPLEMENTARY MATERIALS file (“Supplementary_Information.docx”).
DOI: 10.6084/m9.figshare.29266479
title: Technologically-rich computational activities in K–12 education: a systematic review of constructivist and constructionist interventions

description: The interest in computing learning activities is continuously increasing, keeping pace with the evolution of educational technologies. This rise in engagement is evident within approaches grounded in constructivism and constructionism, which provide an ideal setting for the spectrum of skills, literacies, and competencies that global initiatives capitalise on in K–12 education. Due to recent advancements in technology and societal changes, we are addressing the need for an updated perspective focussed on designing and implementing computational activities. To achieve this, we have analysed forty-six peer-reviewed empirical studies from the last decade to summarise technology-supported learning strategies' current direction and future potential. The main findings describe programming software and IoT as the preferred digital tools, often presented in novel combinations, extensions, and contextualisations. Implementation primarily occurs within the domain of computer science but exhibits a high degree of interdisciplinarity. Furthermore, there is an increase in activities referring to real-life scenarios, encouraging learners to develop computational skills beyond the classroom and expand their digital awareness through interaction with emerging technologies. We leverage these trends and significant patterns by proposing a summary of focal points for future research and practice, with a focus on activity design.
DOI: 10.6084/m9.figshare.29266479.v1
title: Technologically-rich computational activities in K–12 education: a systematic review of constructivist and constructionist interventions

description: The interest in computing learning activities is continuously increasing, keeping pace with the evolution of educational technologies. This rise in engagement is evident within approaches grounded in constructivism and constructionism, which provide an ideal setting for the spectrum of skills, literacies, and competencies that global initiatives capitalise on in K–12 education. Due to recent advancements in technology and societal changes, we are addressing the need for an updated perspective focussed on designing and implementing computational activities. To achieve this, we have analysed forty-six peer-reviewed empirical studies from the last decade to summarise technology-supported learning strategies' current direction and future potential. The main findings describe programming software and IoT as the preferred digital tools, often presented in novel combinations, extensions, and contextualisations. Implementation primarily occurs within the domain of computer science but exhibits a high degree of interdisciplinarity. Furthermore, there is an increase in activities referring to real-life scenarios, encouraging learners to develop computational skills beyond the classroom and expand their digital awareness through interaction with emerging technologies. We leverage these trends and significant patterns by proposing a summary of focal points for future research and practice, with a focus on activity design.