cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.35h8n
title: Data from: Inconsistency between morphological traits and ancestry of individuals in the hybrid zone between two Rhododendron japonoheptamerum varieties revealed by a genotyping-by-sequencing approach

description: The morphological traits and genetic backgrounds of hybrid individuals in
 a hybrid zone reflect the history of that zone. In the hybrid zone between
 Rhododendron japonoheptamerum var. hondoense (RJH) and R. japonoheptamerum
 var. kyomaruense (RJK), flower morphological traits that can be used to
 distinguish the two varieties were measured and leaves were sampled for
 DNA extraction. Reference populations consisting of pure RJH and RJK were
 also used. Genotype data for individuals were obtained by the multiplexed
 ISSR genotyping by sequencing (MIG-seq) method. RJH and RJK in the
 reference populations were morphologically and genetically clearly
 differentiated. In the hybrid zone studied, although there were
 morphologically pure RJH and RJK, and hybrids between them, most
 individuals, including those that were morphologically pure, had
 ancestries from both RJH and RJK. There were no significant correlations
 between morphological traits and the proportion of ancestry within an
 individual. These results suggest that this hybrid zone originated from
 the hybridization between the RJH and RJK in the past. The result of model
 comparison among population demographic models also supported this
 hypothesis, and the time when the hybrid zone was established was
 estimated to be 410,000 years ago. It is considered that accumulation of
 recombinations subsequent to the formation of the hybrid zone contributed
 to the inconsistency between the morphological traits and the fraction of
 each ancestral genome within an individual.
description: Rhododendron_data_and_scripts161206This zip file contains simple texts (.txt, .csv, .raw, .ped and .map) and scripts for R and Python (.r and .py).
DOI: 10.15468/dl.5hwp7h
title: Occurrence Download

description: A dataset containing 18607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.18.4_1",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 18607 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000989-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.tr05q
title: Data from: Integrating viability and fecundity selection to illuminate the adaptive nature of genetic clines

description: Genetically-based trait variation across environmental gradients can
 reflect adaptation to local environments. However, natural populations
 that appear well-adapted often exhibit directional, not stabilizing,
 selection on ecologically-relevant traits. Temporal variation in the
 direction of selection could lead to stabilizing selection across multiple
 episodes of selection, which might be overlooked in short-term studies
 that evaluate relationships of traits and fitness under only one set of
 conditions. Furthermore, non-random mortality prior to trait expression
 can bias inferences about trait evolution if viability selection opposes
 fecundity selection. Here, we leveraged fitness and trait data to test
 whether phenotypic clines are genetically based and adaptive, whether
 temporal variation in climate imposes stabilizing selection, and whether
 viability selection acts on adult phenotypes. We monitored transplants of
 the subalpine perennial forb, Boechera stricta (Brassicaceae), in common
 gardens at two elevations over 2-3 years that differed in drought
 intensity, quantifying viability and fecundity fitness components for four
 heritable traits: specific leaf area, integrated water-use efficiency,
 height at first flower, and flowering phenology. Our results indicate that
 genetic clines are maintained by selection, but their expression is
 context dependent, as they do not emerge in all environments. Moreover,
 selection varied spatially and temporally. Stabilizing selection was most
 pronounced when we integrated data across years. Finally, viability
 selection prior to trait expression targeted adult phenotypes (age and
 size at flowering). Indeed, viability selection for delayed flowering
 opposed fecundity selection for accelerated flowering, demonstrating that
 neglecting to account for viability selection could lead to inaccurate
 conclusions that populations are maladapted. Our results suggest that
 reconciling clinal trait variation with selection requires data collected
 across multiple spatial scales, time frames, and life history stages.
description: Wadgymar_et_al_Evolution_LettersThis zip file contains the data files associated with all figures and analyses in the manuscript by Wadgymar et. al entitled "Integrating viability and fecundity selection to illuminate the adaptive nature of genetic clines", Evolution Letters. We also include the R-scripts necessary to produce all Aster analyses. A ReadMe file describes the contents of all data files.
DOI: 10.15468/dl.6c6cba
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salpichroa microloba",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000990-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1rs10
title: Data from: Reduced survival and reproductive success generates selection pressure for the dengue mosquito Aedes aegypti to evolve resistance against infection by the microsporidian parasite Vavraia culicis

description: The success and sustainability of control measures aimed at reducing the
 transmission of mosquito-borne diseases will depend on how they influence
 the fitness of mosquitoes in targeted populations. We investigated the
 effects of the microsporidian parasite Vavraia culicis on the survival,
 blood-feeding behaviour and reproductive success of female Aedes aegypti
 mosquitoes, the main vector of dengue. Infection reduced survival to
 adulthood and increased adult female mosquito age-dependent mortality
 relative to uninfected individuals; this additional mortality was closely
 correlated with the number of parasite spores they harboured when they
 died. In the first gonotrophic cycle, infected females were less likely to
 blood-feed, took smaller meals when they did so, and developed fewer eggs
 than uninfected females. Even though the conditions of this laboratory
 study favoured minimal developmental times, the costs of infection were
 already being experienced by the time females reached an age at which they
 could first reproduce. These results suggest there will be selection
 pressure for mosquitoes to evolve resistance against this pathogen if it
 is used as an agent in a control program to reduce the transmission of
 mosquito-borne human diseases.
description: expt12_female_survival_dataThis file contains data on the survival of adult female mosquitoes from Experiments 1 and 2.expt1_fecundity_blood_dataThe file 'expt1_fecundity_blood_data' contains data from the Experiment 1 related to female fecundity and blood feeding.
DOI: 10.5061/dryad.2hn31
title: Data from: Relatedness with plant species in native community influences ecological consequences of range expansions

description: Global warming is enabling many plant species to expand their range to
 higher latitudes and altitudes, where they may suffer less from natural
 aboveground and belowground enemies. Reduced control by natural enemies
 can enable climate warming-induced range expanders to get an advantage in
 competition with natives and become disproportionally abundant in their
 new range. However, so far studies have examined individual growth of
 range expanders, which have common congeneric plant species in their new
 range. Thus it is not known how general is this reduced effect of above-
 and belowground enemies and how it operates in communities, where multiple
 plant species also interact with each other. Here we show that
 range-expanding plant species with and without congenerics in the invaded
 habitats differ in their ecological interactions in the new range. In a
 community-level experiment, range-expanding plant species, both with and
 without congenerics, suppressed the growth of a herbivore. However, only
 range expanders without congenerics reduced biomass production of the
 native plant species. In the present study, range expanders without
 congenerics allocated more biomass aboveground compared to native plant
 species, which can explain their competitive advantage. Competitive
 interaction and also biomass allocation of native plants and their
 congeneric range expanders were similar. Our results highlight that
 information about species phylogenetic relatedness with native flora can
 be crucial for improving predictions about the consequences of climate
 warming-induced range expansions.
description: Data_DryadThis data file contains all of the data, published in Koorem et al. "Relatedness with plant species in native community influences ecological consequences of range expansions". First sheet "Community level biomass" contains above-and belowground biomass (g) of plant communities in each mesocosm. Second sheet "Biomass of individual plants" contains aboveground biomass of each plant individual in each mesocosm. Third sheet "Chemistry of individual plants" contains C and N content of Brassicacea plants in this experiment. Fourth sheet "Herbivore weight" contains the weight and relative growth rate of herbivores in this experiment.
DOI: 10.5061/dryad.4v23b
title: Data from: High human papillomavirus (HPV) prevalence in South African adolescents and young women encourages expanded HPV vaccination campaigns

description: Objectives: To investigate prevalence of cervical human papillomavirus
 (HPV) genotypes to inform HPV vaccination strategy in South Africa and to
 study factors associated with HPV prevalence. Methods: Sexually active,
 HIV-negative women, aged 16-22 years recruited from Soweto (n=143) and
 Cape Town (n=148) were tested for cervical HPV and other genital
 infections. Results: Overall HPV prevalence was 66.7% (194/291) in young
 women. Cape Town women were more likely to have multiple HPV infections
 than the Soweto women (48.0%, 71/148 versus 35.0%, 50/143 respectively,
 p=0.033) and probable HR-HPV types (34.5%, 51/148 versus 21.7%, 31/143
 respectively, p=0.022). The most frequently detected HPV types were HPV-16
 (11.7%), HPV-58 (10.3%), HPV-51 (8.9%), HPV-66 (8.6%), HPV-18 and HPV-81
 (7.6% each). HPV types targeted by the bivalent HPV vaccine (HPV-16/18)
 were detected in 18.6% (54/291) of women, while those in the quadrivalent
 vaccine (HPV-6/11/16/18) were detected in 24.7% (72/291) of women; and
 those in the nonavalent vaccine (HPV-6/11/16/18/31/33/45/52/58) were
 detected in 38.5% (112/291) of women. In a multivariable analysis, BV
 remained significantly associated with HPV infection (OR: 4.0, 95% CI:
 1.4-12.6). Women were more likely to be HPV positive if they had received
 treatment for STI during the past 6-months (OR: 3.4, 95% CI: 1.1-12.4) or
 if they had ever been pregnant (OR: 2.3, 95% CI: 1.1-5.5). Compared to
 women who reported only one sexual partner, those with increased number of
 lifetime sex partners were more likely to have HPV (4-10 partners: OR:
 2.9, 95% CI: 1.1-8.0). Conclusion: The high prevalence of HPV types
 targeted by the nonavalent HPV vaccine encourages the introduction of this
 vaccine and catch-up HPV vaccination campaigns in South Africa. The high
 burden of BV and concurrent STIs also highlights the need to improve the
 prevention and appropriate management of sexually-acquired and other
 genital tract infections in South African youth.
description: DRYAD Database for South
 African Adolescent studyAge and sexual debut
 data was generated from questionnaires. Sexual transmitted infection was
 generated from the laboratory from the specimens provided by study
 participantsDRYAD.zip
DOI: 10.5061/dryad.h51jg
title: Data from: Mutational effects depend on ploidy level: all else is not equal

description: Ploidy is predicted to influence adaptation directly, yet whether single
 mutations behave the same in different ploidy backgrounds has not been
 well studied. It has often been assumed theoretically that aside from
 dominance, selective parameters do not differ between cells of varying
 ploidy. Using the budding yeast Saccharomyces cerevisiae, I compared the
 effect size of 20 adaptive mutations in haploids and homozygous diploids
 and found, surprisingly, that the same mutations often had a much larger
 effect in haploids than homozygous diploids. This empirical result
 demonstrates that it cannot be assumed that mutations will have the same
 effect in haploids and homozygous diploids.
description: Tolerance parameter
 estimates from MLcombined_A_AA_MLc.csvBMN parameters for graphingParameters for data points (colours, position, pch etc.) from Gerstein et al. (Genetics, 2012) dataset.1207NBMnys_param.csvTolerance log-likelihood results from ML modelsResults from ML models for the three tolerance parameters (IC50, a50, m).NysIC50_A_AA_modelsig.csvR code to produce Figure1 (Tolerance data)1209 Figure1.RR code to produce Figure2 (Bioscreen data)R code for Figure 2. Includes statistical analysis for the bioscreen data.1207 Figure2_GR.RBioscreen dataGrowth rate data required to produce Figure 2.A_AA_rawdata.csv
DOI: 10.5281/zenodo.16528043
title: GREEN ENERGY BASED LOAN_APPROVAL_SYNTHETIC_DATA SET
DOI: 10.15468/dl.psfv6f
title: Occurrence Download

description: A dataset containing 29349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Prosopis glandulosa"
 ]
}

 The dataset includes 29349 records from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000988-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cn90m
title: Data from: Major histocompatibility complex selection dynamics in pathogen-infected túngara frog (Physalaemus pustulosus) populations

description: Pathogen-driven selection can favour major histocompatibility complex
 (MHC) alleles that confer immunological resistance to specific diseases.
 However, strong directional selection should deplete genetic variation
 necessary for robust immune function in the absence of balancing selection
 or challenges presented by other pathogens. We examined selection dynamics
 at one MHC class II (MHC-II) locus across Panamanian populations of the
 túngara frog, Physalaemus pustulosus, infected by the amphibian chytrid
 fungus Batrachochytrium dendrobatidis (Bd). We compared MHC-II diversity
 in highland túngara frog populations, where amphibian communities have
 experienced declines owing to Bd, with those in the lowland region that
 have shown no evidence of decline. Highland region frogs had MHC variants
 that confer resistance to Bd. Variant fixation appeared to occur by
 directional selection rather than inbreeding, as overall genetic variation
 persisted in populations. In Bd-infected lowland sites, however, selective
 advantage may accrue to individuals with only one Bd-resistance allele,
 which were more frequent. Environmental conditions in lowlands should be
 less favourable for Bd infection, which may reduce selection for specific
 Bd resistance in hosts. Our results suggest that MHC selection dynamics
 fluctuate in túngara frog populations as a function of the favourability
 of habitat to pathogen spread and the vulnerability of hosts to infection.
description: Alignment of MHC
 sequences and primersAlignment of MHC-II β1
 exonic and intronic sequences with primers used for their
 amplificationTungaraMHC-aligned-with_primers-submission.fasAlignment of MHC amino acid sequencesAA alignment.fasGenotyping data not corrected for null allelesGenotyping results for 5 microsatellite markers and the exon2 of one MHC class II locus for Physalaemus pustulosus wild populations (genepop format)DataS1.txtgenotyping data corrected for null allelesGenotyping results for 4 microsatellite markers, corrected for null alleles using MICROCHECKER and the exon2 of one MHC class II locus for Physalaemus pustulosus wild populations (genepop format)DataS2.txt
DOI: 10.5061/dryad.59t58
title: Data from: Multimodal cues improve prey localization under complex environmental conditions

description: Predators often eavesdrop on sexual displays of their prey. These displays
 can provide multimodal cues that aid predators, but the benefits in
 attending to them should depend on the environmental sensory conditions
 under which they forage. We assessed whether bats hunting for frogs use
 multimodal cues to locate their prey and whether their use varies with
 ambient conditions. We used a robotic set-up mimicking the sexual display
 of a male túngara frog (Physalaemus pustulosus) to test prey assessment by
 fringe-lipped bats (Trachops cirrhosus). These predatory bats primarily
 use sound of the frog's call to find their prey, but the bats also
 use echolocation cues returning from the frog's dynamically moving
 vocal sac. In the first experiment, we show that multimodal cues affect
 attack behaviour: bats made narrower flank attack angles on multimodal
 trials compared with unimodal trials during which they could only rely on
 the sound of the frog. In the second experiment, we explored the
 bat's use of prey cues in an acoustically more complex environment.
 Túngara frogs often form mixed-species choruses with other frogs,
 including the hourglass frog (Dendropsophus ebraccatus). Using a
 multi-speaker set-up, we tested bat approaches and attacks on the robofrog
 under three different levels of acoustic complexity: no calling D.
 ebraccatus males, two calling D. ebraccatus males and five D. ebraccatus
 males. We found that bats are more directional in their approach to the
 robofrog when more D. ebraccatus males were calling. Thus, bats seemed to
 benefit more from multimodal cues when confronted with increased levels of
 acoustic complexity in their foraging environments. Our data have
 important consequences for our understanding of the evolution of
 multimodal sexual displays as they reveal how environmental conditions can
 alter the natural selection pressures acting on them.
description: Data file Trachops
 experiment 1 and 2This data file contains
 the data from experiment 1 (sheets 1, 3, 5) and experiment 2 (sheets 2, 4,
 6). Sheets 1 and 2 contain all raw data. Sheets 3 and 4 contain attack
 angles averaged per individual bat, as a response to the respective
 treatments. Sheets 5 and 6 contain the mean resultant vector lengths of
 six approach angles for each individual bat, as a response to the
 respective treatments.dataset
 Trachops.xlsx
DOI: 10.5061/dryad.7nh16
title: Data from: Sperm use economy of honeybee (Apis mellifera) queens

description: The queens of eusocial ants, bees, and wasps only mate during a very brief
 period early in life to acquire and store a lifetime supply of sperm. As
 sperm cannot be replenished, queens have to be highly economic when using
 stored sperm to fertilize eggs, especially in species with large and
 long-lived colonies. However, queen fertility has not been studied in
 detail, so that we have little understanding of how economic sperm use is
 in different species, and whether queens are able to influence their sperm
 use. This is surprising given that sperm use is a key factor of eusocial
 life, as it determines the fecundity and longevity of queens and therefore
 colony fitness. We quantified the number of sperm that honeybee (Apis
 mellifera) queens use to fertilize eggs. We examined sperm use in
 naturally mated queens of different ages and in queens artificially
 inseminated with different volumes of semen. We found that queens are
 remarkably efficient and only use a median of 2 sperm per egg
 fertilization, with decreasing sperm use in older queens. The number of
 sperm in storage was always a significant predictor for the number of
 sperm used per fertilization, indicating that queens use a constant ratio
 of spermathecal fluid relative to total spermathecal volume of 2.364 ×
 10−6 to fertilize eggs. This allowed us to calculate a lifetime fecundity
 for honeybee queens of around 1,500,000 fertilized eggs. Our data provide
 the first empirical evidence that honeybee queens do not manipulate sperm
 use, and fertilization failures in worker-destined eggs are therefore
 honest signals that workers can use to time queen replacement, which is
 crucial for colony performance and fitness.
description: All data naturally mated
 queens of different agesThis file contains data
 collected from the group of naturally mated queens of different ages used
 in this experiment. Both the raw data on sperm use per egg and sperm
 number stored in the spermatheca, as well as the processed data that
 underlie the figures and model calculations are included in this
 file.All data artificially
 inseminated queens of similar ageThis file contains data
 collected from the group of artificially inseminated queens of similar age
 (just after hatching) used in this experiment. Both the raw data on sperm
 use per egg and sperm number stored in the spermatheca, as well as the
 processed data that underlie the figures and model calculations are
 included in this file.
DOI: 10.5061/dryad.t6r83
title: Data from: Perceived duration of brief visual events is mediated by timing mechanisms at the global stages of visual processing

description: There is a growing body of evidence pointing to the existence of
 modality-specific timing mechanisms for encoding sub-second durations. For
 example, the duration compression effect describes how prior adaptation to
 a dynamic visual stimulus results in participants underestimating the
 duration of a sub-second test stimulus when it is presented at the adapted
 location. There is substantial evidence for the existence of both cortical
 and pre-cortical visual timing mechanisms; however, little is known about
 where in the processing hierarchy the cortical mechanisms are likely to be
 located. We carried out a series of experiments to determine whether or
 not timing mechanisms are to be found at the global processing level. We
 had participants adapt to random dot patterns that varied in their motion
 coherence, thus allowing us to probe the visual system at the level of
 motion integration. Our first experiment revealed a positive linear
 relationship between the motion coherence level of the adaptor stimulus
 and duration compression magnitude. However, increasing the motion
 coherence level in a stimulus also results in an increase in global speed.
 To test whether duration compression effects were driven by global speed
 or global motion, we repeated the experiment, but kept global speed fixed
 while varying motion coherence levels. The duration compression persisted,
 but the linear relationship with motion coherence was absent, suggesting
 that the effect was driven by adapting global speed mechanisms. Our
 results support previous claims that visual timing mechanisms persist at
 the level of global processing.
description: Data