cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q181w4
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-3.559570 43.436965,-3.405761 43.068887,-3.361816 42.827638,-3.186035 42.601619,-2.834472 42.455887,-2.416992 42.407234,-2.197265 42.617791,-1.999511 42.827638,-1.779785 43.052833,-1.647949 43.309191,-1.889648 43.548548,-2.241210 43.786958,-2.702636 43.802818,-3.427734 43.739352,-3.559570 43.436965))",
 "HasGeospatialIssue is false",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011279-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fouxej
title: Occurrence Download

description: A dataset containing 14716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "Country is South Africa"
 ]
}

 The dataset includes 14716 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062124-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62ycdb
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is Australia",
 "Country is Netherlands",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Sweden",
 "Country is Spain",
 "Country is Belgium",
 "Country is Canada",
 "Country is Norway"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Solanum rostratum Dunal",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 493 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011282-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgs7fr
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomatium filicinum (M.E.Jones) Mansfield & M.Stevens"
 ]
}

 The dataset includes 69 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173108-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ush3bb
title: Occurrence Download

description: A dataset containing 3961809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Country is Germany",
 "TaxonKey is Tracheophyta",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990",
 "CoordinateUncertaintyInMeters is greater than or equal to 0",
 "CoordinateUncertaintyInMeters is less than or equal to 5000"
 ]
}

 The dataset includes 3961809 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009239-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hufqlw
title: Occurrence Download

description: A dataset containing 3021 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Percina sciera (Swain, 1883)"
 ]
}

 The dataset includes 3021 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062127-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f3jh9
title: Occurrence Download

description: A dataset containing 4299 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bougainvillea spectabilis Willd."
 ]
}

 The dataset includes 4299 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053646-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he4j5w
title: Occurrence Download

description: A dataset containing 17977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-800.0",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-130.20806 55.01952,-129.94714 23.23351,-104.8988 23.23351,-106.2034 55.24327,-130.20806 55.01952))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 17977 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022401-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5f92a0
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Percina stictogaster Burr & Page, 1993"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062131-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8f4k3
title: Occurrence Download

description: A dataset containing 7384 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles geoffroyi Kuhl, 1820"
 ]
}

 The dataset includes 7384 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173109-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5cowx
title: Occurrence Download

description: A dataset containing 2619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisognathus lacrymosus (Du Bus de Gisignies, 1846)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2619 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011286-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6snpkk
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctoa fulvella (Dicks.) Bruch & Schimp.",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 302 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062135-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwrnvq
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-54.15324 -29.23884,-47.69116 -29.23884,-47.69116 -25.25948,-54.15324 -25.25948,-54.15324 -29.23884))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tetragonisca angustula (Latreille, 1811)"
 ]
}

 The dataset includes 47 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022402-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vjqsm
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepanthopsis acuminata Ames"
 ]
}

 The dataset includes 125 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173111-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbz46x
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Masdevallia maxilimax (Luer) Luer"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173110-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxtou0
title: Occurrence Download

description: A dataset containing 4455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pantala flavescens (Fabricius, 1798)"
 ]
}

 The dataset includes 4455 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011289-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqtxqu
title: Occurrence Download

description: A dataset containing 11728 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pomoxis Rafinesque, 1818"
 ]
}

 The dataset includes 11728 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062137-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quh6nv
title: Occurrence Download

description: A dataset containing 133143104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 133143104 records from 6863 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024957-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28429760
title: Data for: Disentangling the effects of multi-functional forestry practices on the abundances of birds and their invertebrate prey

description: European forests are increasingly managed to harmonize production goals with biodiversity conservation, through practices such as retention and close-to-nature forestry. Forest birds may benefit from these practices, but it remains unclear how the effects of different management practices compare, and whether responses to management are driven by changes in the availability of invertebrates, a crucial element of bird diets during the breeding season. To answer these questions, we carried out bird point counts on 135 1-ha plots in southwestern Germany from 2017 to 2022, and measured the abundance of invertebrate groups in the lower forest strata using flight interception traps and pitfall traps. We used <i>N</i>-mixture models and Bayesian GLMs to estimate, respectively, how abundances of 32 bird species and 20 invertebrate groups respond to predictors representing forest management, structure, composition and the abiotic environment. We then compared the responses of birds and invertebrates, and employed piecewise Structural Equation Models (SEMs) to disentangle the causal links between forest structure and abundances of bird guilds and invertebrate groups. Bird abundances responded to predictors representing retention and close-to-nature forestry practices, but the direction of effects varied across species and facets of management. Moreover, the effects of retention practices were weaker than those of close-to-nature practices, especially those of admixing broadleaf trees. Hence, these management practices likely need to be applied in tandem with others (e.g. gap creation) to secure a diverse forest bird assemblage. Invertebrate abundances responded to both management types, but responses did not clearly align with those of bird species, and SEMs did not support direct links between bird and invertebrate abundances. Still, we revealed parallel positive responses of birds and invertebrate groups to the same habitat features, such as broadleaf share, suggesting that these may function as cues for high food availability during habitat selection by birds. Therefore, forest management that aims at increasing bird populations should address other potential limiting factors, such as nest site availability, in addition to fostering high invertebrate abundances, which may safeguard habitat quality for birds.
DOI: 10.6084/m9.figshare.28429760.v1
title: Data for: Disentangling the effects of multi-functional forestry practices on the abundances of birds and their invertebrate prey

description: European forests are increasingly managed to harmonize production goals with biodiversity conservation, through practices such as retention and close-to-nature forestry. Forest birds may benefit from these practices, but it remains unclear how the effects of different management practices compare, and whether responses to management are driven by changes in the availability of invertebrates, a crucial element of bird diets during the breeding season. To answer these questions, we carried out bird point counts on 135 1-ha plots in southwestern Germany from 2017 to 2022, and measured the abundance of invertebrate groups in the lower forest strata using flight interception traps and pitfall traps. We used <i>N</i>-mixture models and Bayesian GLMs to estimate, respectively, how abundances of 32 bird species and 20 invertebrate groups respond to predictors representing forest management, structure, composition and the abiotic environment. We then compared the responses of birds and invertebrates, and employed piecewise Structural Equation Models (SEMs) to disentangle the causal links between forest structure and abundances of bird guilds and invertebrate groups. Bird abundances responded to predictors representing retention and close-to-nature forestry practices, but the direction of effects varied across species and facets of management. Moreover, the effects of retention practices were weaker than those of close-to-nature practices, especially those of admixing broadleaf trees. Hence, these management practices likely need to be applied in tandem with others (e.g. gap creation) to secure a diverse forest bird assemblage. Invertebrate abundances responded to both management types, but responses did not clearly align with those of bird species, and SEMs did not support direct links between bird and invertebrate abundances. Still, we revealed parallel positive responses of birds and invertebrate groups to the same habitat features, such as broadleaf share, suggesting that these may function as cues for high food availability during habitat selection by birds. Therefore, forest management that aims at increasing bird populations should address other potential limiting factors, such as nest site availability, in addition to fostering high invertebrate abundances, which may safeguard habitat quality for birds.
DOI: 10.15468/dl.8a73ff
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paralichthys triocellatus"
 ]
}

 The dataset includes 54 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052437-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6w2gkf
title: Occurrence Download

description: A dataset containing 3309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cunninghamia lanceolata",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3309 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052438-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/76jfjw
title: Algal Diversity in Broghil National Park (BNP23ALG01)

description: This dataset documents algal diversity from Broghil National Park, recorded in July 2023. It includes occurrence data with spatial coordinates and rarity status. The aim of this dataset is to contribute to the understanding of alpine aquatic biodiversity in the Eastern Hindu Kush and to support conservation planning in this ecologically sensitive region. This is the first publicly available algal dataset from Broghil National Park and includes both rare and common taxa
DOI: 10.15468/dl.mtt8pq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ixobrychus minutus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65qves
title: Occurrence Download

description: A dataset containing 13264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cupressus sempervirens",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 13264 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052440-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nz89sc
title: Occurrence Download

description: A dataset containing 38309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pelophylax perezi"
 ]
}

 The dataset includes 38309 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052441-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdwcxh
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gorsachius magnificus"
 ]
}

 The dataset includes 102 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052442-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17929370
title: Supplementary Material for "Glycolysis-stratified coordination of fatty acid and glutamine metabolism in pancreatic ductal adenocarcinoma""

description: Supplementary Material for Glycolysis-stratified coordination of fatty acid and glutamine metabolism in pancreatic ductal adenocarcinoma

Contents:- A Graphical Abstract

This Zenodo repository contains all supplementary figures, tables, and source data referenced in the manuscript, including transcriptomic analyses (S1-S2), metabolite-inference analyses (S3-S5), a schematic of fatty-acid families and representative enzymes (S6), and proteomic validation (S7).

S1 – Predictive Modeling of GLN ActivityS1 Fig. Elastic-Net out-of-fold predictions for GLN activity by glycolysis grouping. S1 Table. Cross-validated performance metrics (R² and RMSE) by grouping. S1 Data. Out-of-fold predicted vs. observed GLN activity by sample.

S2 – FA Family DefinitionsS2 Table. Curated mapping of fatty-acid (FA) pathways/enzymes to functional families used in transcriptomic analyses.

S3 – Inferred Metabolite ActivitiesS3 Fig. Principal component analysis (PCA) of inferred metabolite activities across PDAC samples. S3 Table. Raw and z-scored inferred metabolite activity scores for 13 metabolites.

S4 – Metabolite State ComparisonsS4 Fig. Heatmap of mean z-scored metabolite activities across metabolite-defined metabolic phenotypes. S4 Table. One-way ANOVA and Kruskal–Wallis statistics comparing metabolite activities across phenotypes.

S5 – Mapping and Final State LabelsS5 Table. Metabolite–gene mapping with +1/−1 directionality assignments used to compute weighted metabolite activity scores. S5 Data. Final metabolite-defined metabolic state labels for all PDAC samples.

S6 – FA Chain-length Schematic and CPTAC Proteome CharacteristicsS6 Fig. Schematic mapping representative enzymes and pathways across fatty-acid chain-length classes (MCFA, LCFA, VLCFA) and two example lipid families (glycerophospholipids, sphingolipids).S6 Table. Descriptive statistics for the CPTAC PDAC tumor proteome (MD_abundance_tumor matrix), including number of tumors (n = 140), total proteins (11,662), per-protein missingness distribution, and the number of proteins retained after filtering to ≥70% observed values (7,993).

S7 – Proteomic Validation of FA–GLN Coordination (CPTAC PDAC Cohort)S7 Fig. Proteomic validation of sphingolipid–glutamine coordination by glycolysis state in PDAC. Family-level associations between GLN and FA protein modules (glycerophospholipid, sphingolipid) are shown for low vs. high glycolysis tertiles.S7 Table. Proteomic validation statistics for FA–GLN family-level correlations across glycolysis strata in the CPTAC PDAC cohort (n = 140). For each FA family and glycolysis tertile, the table reports sample size, Spearman correlation between GLN and FA protein-module scores, nominal p-values, and Benjamini–Hochberg FDR-adjusted q-values.

Contact: For questions regarding these supplementary files please contact the author at (sfareed0826@gmail.com).
description: Updated supplementary ZIP to include S6 Table and S7 Fig/Table for CPTAC proteomic validation.
DOI: 10.15468/dl.ybg82v
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cycas revoluta",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 906 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052443-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17929504
title: Data from:  A chemical space model for the exploration of eco-toxicological data

description: Dataset from the publication "A chemical space model for the exploration of eco-toxicological data".

The dataset contains metadata and (eco)toxicological information for over 109 000 compounds, originally retrieved from the Norman SusDat database. 

Code available at https://github.com/dalodriguez/TMAP_Ecotox