cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.n6md69
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber japonicus Houttuyn, 1782",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 631 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011853-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17031/666c4f4042c07
title: 1955-1960 Markowski Cavendish Dock Acartia tonsa and Ficopomatus enigmaticus records

description: This dataset was collected to give an indication of the invertebrate fauna of Cavendish Dock, which had undergone significant expansion in the years preceding this survey
description: Part of MSFD NNS baseline data collation project (Hughes, E., Wood, C.A., Arnold, M., Bishop, J.D.D., Griffiths, C., Sewell, J., and Lear, D. (2016) Collating baseline invasive non-indigenous species data for MSFD reporting. Defra report ME5223. 59pp.). Subset of a dataset as records were only pulled for a selection of INNS. Contains records for Acartia tonsa and Ficopomatus enigmaticus.

See Markowski, S. (1962). Faunistic and Ecological Investigations in Cavendish Dock, Barrow-In-Furness.Â Journal of Animal Ecology,Â 31(1), 43-51. doi:10.2307/2331 for original data source.
DOI: 10.15468/dl.b796cg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber colias Gmelin, 1789",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011854-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhy5n2
title: Occurrence Download

description: A dataset containing 226454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, Italy, Greece, Svalbard and Jan Mayen, Denmark, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Belgium, Netherlands, France, Germany, Switzerland, Austria, Türkiye, Russian Federation, Belarus, Ukraine, Romania, Bulgaria, North Macedonia, Albania, Montenegro, Serbia, Kosovo, Slovenia, Bosnia and Herzegovina, Poland, Czechia, Slovakia, Hungary)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sparganium erectum L."
 ]
}

 The dataset includes 226454 records from 925 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011851-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12637147
title: Genetic alterations and expression programs of oral squamous cell carcinoma associated with betel quid chewing

description: Betel quid (BQ) chewing is a profound risk for oral squamous cell carcinoma (OSCC) in Southeast Asia. To decipher contributory genomic abnormalities and transcriptional reprogramming in these malignancies, we conducted a multi-omics survey, including exome sequencing of tumor-normal pairs from 261 male patients with OSCC (129 habitual BQ chewers and 132 non-BQ users), alone with integrated single-cell and spatial transcriptomics of a set of tumors. Comparative analyses of the mutational catalog identified enrichment of significantly altered genes (e.g mutations of TP53 and CHUK, copy gains of MAP3K13 and FADD, copy losses of CDKN2A) and mutational signatures associated with BQ chewing. Assessment of oncogenic and co-occurring actionable alterations demonstrated frequently altered oncogenic pathways (Hippo and p53 signaling) and potential combination therapy opportunities linked to BQ use. In addition, evaluation of epithelial, immune, stromal expression programs in the corresponding tissue compartments revealed a shift of tumor microenvironment in BQ-related OSCC, characterized by induced hypoxia of tumor epithelium, altered immunosuppression of dendritic cells, and raised sprouting angiogenesis of tumor endothelium. Quantitative predictions of intercellular communications inferred a more heterogeneous cell-cell crosstalk among BQ-related OSCC, highlighted by extensive interactions of fibroblasts and dendritic cells with other non-epithelial cell types via mostly extracellular matrix-receptor signaling pathways. Collectively, these differences in genomic landscape and tumor niche suggest that OSCC caused by BQ chewing could be an etiological subtype different from their BQ-negative counterparts.
DOI: 10.5281/zenodo.12637148
title: Genetic alterations and expression programs of oral squamous cell carcinoma associated with betel quid chewing

description: Betel quid (BQ) chewing is a profound risk for oral squamous cell carcinoma (OSCC) in Southeast Asia. To decipher contributory genomic abnormalities and transcriptional reprogramming in these malignancies, we conducted a multi-omics survey, including exome sequencing of tumor-normal pairs from 261 male patients with OSCC (129 habitual BQ chewers and 132 non-BQ users), alone with integrated single-cell and spatial transcriptomics of a set of tumors. Comparative analyses of the mutational catalog identified enrichment of significantly altered genes (e.g mutations of TP53 and CHUK, copy gains of MAP3K13 and FADD, copy losses of CDKN2A) and mutational signatures associated with BQ chewing. Assessment of oncogenic and co-occurring actionable alterations demonstrated frequently altered oncogenic pathways (Hippo and p53 signaling) and potential combination therapy opportunities linked to BQ use. In addition, evaluation of epithelial, immune, stromal expression programs in the corresponding tissue compartments revealed a shift of tumor microenvironment in BQ-related OSCC, characterized by induced hypoxia of tumor epithelium, altered immunosuppression of dendritic cells, and raised sprouting angiogenesis of tumor endothelium. Quantitative predictions of intercellular communications inferred a more heterogeneous cell-cell crosstalk among BQ-related OSCC, highlighted by extensive interactions of fibroblasts and dendritic cells with other non-epithelial cell types via mostly extracellular matrix-receptor signaling pathways. Collectively, these differences in genomic landscape and tumor niche suggest that OSCC caused by BQ chewing could be an etiological subtype different from their BQ-negative counterparts.
DOI: 10.15468/dl.pr5gqj
title: Occurrence Download

description: A dataset containing 642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pagrus major (Temminck & Schlegel, 1843)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 642 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011857-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwe2gd
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octopus sinensis d'Orbigny, 1834",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011858-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12653735
title: Landscape scenicness prompts

description: Reproduction repository for the paper titled "Prompt-guided and multimodal landscape scenicness assessments with vision-language models". This repo contains the following files:



Prompts collected by our crowdsourcing effort

CLIP-and SigLIP extracted embeddings of ScenicOrNot images

Splits used for few-shot learning

GeoJSON file containing geotagged ScenicOrNot labels for each image


The original ScenicOrNot images are hosted by Geograph, whose license terms do not allow re-sharing of the images. Instead, we make the embeddings used in our study available and provide scripts to download the original images on our Github repository, which also contains the code used for this study. Alternatively, please contact the authors for a copy of the SON images.
DOI: 10.15468/dl.6cg9de
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tribolium destructor Uyttenboogaart, 1934"
 ]
}

 The dataset includes 652 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011859-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4eza5u
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Panama, Venezuela (Bolivarian Republic of), Suriname, Honduras, Colombia, Nicaragua, Costa Rica, Mexico, El Salvador, Guatemala)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vasconcellea cauliflora (Jacq.) A.DC."
 ]
}

 The dataset includes 524 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011860-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.726rnd
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gadus macrocephalus Tilesius, 1810",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 852 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011861-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ted6r4
title: Occurrence Download

description: A dataset containing 148183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ailanthus altissima (Mill.) Swingle"
 ]
}

 The dataset includes 148183 records from 1211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011855-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d983f
title: Occurrence Download

description: A dataset listing the 10633 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 10633 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001736-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfjsbj
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea pterophila Burger, Smith & Potter, 1950)"
 ]
}

 The dataset includes 212 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001745-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive8397.20240510.9
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8398.20240510.9
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8399.20240510.9
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8400.20240510.9
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8401.20240916.9.1
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8402.20240916.9.1
title: Mycobacterium gilvum Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8403.20240916.9.1
title: Mycobacterium intracellulare subsp. intracellulare (Cuttino and McCabe 1949) Castejon et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.wj5pdx
title: Occurrence Download

description: A dataset containing 26999 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diodon hystrix Linnaeus, 1758"
 ]
}

 The dataset includes 26999 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059440-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive8404.20240510.9
title: Mycobacterium intracellulare (Cuttino and McCabe 1949) Runyon 1965 emend. Castejon et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8405.20240510.9
title: Mycobacterium intracellulare (Cuttino and McCabe 1949) Runyon 1965 emend. Castejon et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8406.20240916.9.1
title: Mycobacterium intracellulare (Cuttino and McCabe 1949) Runyon 1965 emend. Castejon et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8407.20240916.9.1
title: Mycobacterium gastri Wayne 1966

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8408.20240510.9
title: Mycobacterium gastri Wayne 1966

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8409.20240510.9
title: Mycobacterium duvalii Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8410.20240510.9
title: Mycobacterium duvalii Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8411.20240510.9
title: Mycobacterium duvalii Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8412.20240916.9.1
title: Mycobacterium duvalii Stanford and Gunthorpe 1971

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8413.20240510.9
title: Mycobacterium chelonae Bergey et al. 1923 emend. Kim et al. 2017 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8414.20240510.9
title: Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992 emend. Leao et al. 2011 emend. Tortoli et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8415.20240510.9
title: Mycobacterium abscessus subsp. abscessus (Moore and Frerichs 1953) Leao et al. 2011 emend. Tortoli et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.em553z
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.11368 15.77492,101.91912 15.80058,101.87027 15.67888,102.00108 15.61431,102.18781 15.58617,102.11368 15.77492))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza aureola Pallas, 1773",
 "Year 2000-2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059441-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive8416.20240916.9.1
title: Mycobacterium abscessus subsp. abscessus (Moore and Frerichs 1953) Leao et al. 2011 emend. Tortoli et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8417.20240510.9
title: Mycobacterium abscessus subsp. abscessus (Moore and Frerichs 1953) Leao et al. 2011 emend. Tortoli et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.vfuj2x
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sulfolobus solfataricus Zillig et al., 1980"
 ]
}

 The dataset includes 151 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059442-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive8418.20240510.9
title: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8419.20240916.9.1
title: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8420.20240510.9
title: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8421.20240510.9
title: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8422.20240916.9.1
title: Mycobacterium confluentis Kirschner et al. 1992 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8423.20240916.9.1
title: Mycobacterium cookii Kazda et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive8424.20230509.8.1
title: Mycobacterium thermoresistibile Tsukamura 1966 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.qjev37
title: Occurrence Download

description: A dataset containing 1372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuscuta chinensis Lam."
 ]
}

 The dataset includes 1372 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004420-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8195585
title: Dataset for ""A dynamic isotope effect in the nucleophilic substitution reaction F- + CD3I"

description: Dataset for ""A dynamic isotope effect in the nucleophilic substitution reaction F- + CD3I"
DOI: 10.5281/zenodo.8195586
title: Dataset for ""A dynamic isotope effect in the nucleophilic substitution reaction F- + CD3I"

description: Dataset for ""A dynamic isotope effect in the nucleophilic substitution reaction F- + CD3I"
DOI: 10.15468/dl.4jvwh3
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-2.72827 42.01632,-7.56934 41.35436,-7.91026 39.53844,-4.43287 38.79837,-1.09185 40.47847,-2.72827 42.01632))",
 "HasGeospatialIssue is false",
 "TaxonKey is Armeria caespitosa (Ortega) Boiss."
 ]
}

 The dataset includes 129 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004423-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2a9p3
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anthophora dispar Lepeletier, 1841",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 82 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004422-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.