cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7947020
title: MFishBT: A global database of biogeochemical tags in migratory fish

description: Humans have long been fascinated by the mysteries surrounding fish migrations, and addressing these complex behaviors often requires large datasets. Biogeochemical tags, including trace elements and stable isotopes, are the most accessible biomarkers for tracking fish migrations. However, access to standardized biogeochemical tag data is rarely available for migratory fish, which limits our understanding of the evolutionary origins, drivers, timing, and corridors of migration. This precludes the development of conservation strategies and the implementation of management actions. Here, we present MFishBT, a global, open-access database of Migratory Fish’s Biogeochemical Tags. As of April 2023, the MFishBT contains biogeochemical records from 1,305 studies, of which 53% used element-to-calcium (E/Ca) ratios, 34% used isotopic ratios, and 13% used both techniques. The database covers 17,402 field sampling locations (inland 47% vs. marine 53%) around the globe, comprising 490 migratory fish species of four classes, 44 orders/suborders, and 137 families. Seventy-nine trace elements and 12 isotope systems were measured across various fish biomineral archives, including otoliths, scales, eye lenses, and vertebrae. E/Ca ratios were examined more frequently than isotopic ratios (59% vs. 41%), led by Sr/Ca, Mg/Ca, Ba/Ca, and <sup>87</sup>Sr/<sup>86</sup>Sr, δ<sup>13</sup>C, and δ<sup>18</sup>O, respectively. The MFishBT compiles 26,417, 15,628, and 2,450,571 records with biogeochemical element values detected in the cores, edges, and core-to-edge transects for biomineral archives of migratory fish, respectively. This is the most globally comprehensive open-access database on biogeochemical tags in migratory fish to date, which can serve a variety of needs in scientific research, conservation, and management. We encourage researchers to add more datasets to this database in the future. This database is released for non-commercial use only. There are no copyright restrictions, and please cite this paper when using these data, or a subset of these data, for publication.
description: MFishBT(https://fish-ecology.shinyapps.io/mfishbt) MFishBTdat(https://github.com/Otoliths/MFishBTdat)
DOI: 10.5281/zenodo.7947656
title: MFishBT: A global database of biogeochemical tags in migratory fish

description: Humans have long been fascinated by the mysteries surrounding fish migrations, and addressing these complex behaviors often requires large datasets. Biogeochemical tags, including trace elements and stable isotopes, are the most accessible biomarkers for tracking fish migrations. However, access to standardized biogeochemical tag data is rarely available for migratory fish, which limits our understanding of the evolutionary origins, drivers, timing, and corridors of migration. This precludes the development of conservation strategies and the implementation of management actions. Here, we present MFishBT, a global, open-access database of Migratory Fish’s Biogeochemical Tags. As of April 2023, the MFishBT contains biogeochemical records from 1,305 studies, of which 53% used element-to-calcium (E/Ca) ratios, 34% used isotopic ratios, and 13% used both techniques. The database covers 17,402 field sampling locations (inland 47% vs. marine 53%) around the globe, comprising 490 migratory fish species of four classes, 44 orders/suborders, and 137 families. Seventy-nine trace elements and 12 isotope systems were measured across various fish biomineral archives, including otoliths, scales, eye lenses, and vertebrae. E/Ca ratios were examined more frequently than isotopic ratios (59% vs. 41%), led by Sr/Ca, Mg/Ca, Ba/Ca, and <sup>87</sup>Sr/<sup>86</sup>Sr, δ<sup>13</sup>C, and δ<sup>18</sup>O, respectively. The MFishBT compiles 26,410, 15,628, and 2,450,571 records with biogeochemical element values detected in the cores, edges, and core-to-edge transects for biomineral archives of migratory fish, respectively. This is the most globally comprehensive open-access database on biogeochemical tags in migratory fish to date, which can serve a variety of needs in scientific research, conservation, and management. We encourage researchers to add more datasets to this database in the future. This database is released for non-commercial use only. There are no copyright restrictions, and please cite this paper when using these data, or a subset of these data, for publication.
description: MFishBT(https://fish-ecology.shinyapps.io/mfishbt) MFishBTdat(https://github.com/Otoliths/MFishBTdat)
DOI: 10.57967/hf/1015
title: Frasier
DOI: 10.21942/uva.22280581.v3
title: Survey Data

description: These are the survey results of the evaluation study. Note that the file is in Dutch. The first tab, 'Data', contains the responses provided by participants The second tab, 'Questions', contains the possible question/answer pairs from the survey (if applicable) The third tab, 'Code Key', contains the key to the codes used in the 'Data' tab
DOI: 10.21942/uva.22280581.v2
title: Survey Data

description: These are the survey results of the evaluation study. Note that the file is in Dutch. The first tab, 'Data', contains the responses provided by participants The second tab, 'Questions', contains the possible question/answer pairs from the survey (if applicable) The third tab, 'Code Key', contains the key to the codes used in the 'Data' tab
DOI: 10.25345/c5r49gm00
title: MassIVE MSV000092733 - GNPS_metabolomics_epicoccum_nigrum_anitins
title: Mass spectrometry dataset asssociated with the profiling of Epicoccum nigrum cultures (liquid and solid media) which have led to the isolation of anitins.
DOI: 10.35077/age-hum
title: InOmBMN_LexA_brain: Whole-brain confocal imaging of fly driver line InOmBMN_LexA expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies

description: Confocal z-stacks (.tiff stacks) transgenic driver lines that express in mechanosensory neurons innervating specific bristle populations on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by expressing mCD8::GFP under control of the UAS or LexAop promotors, and then stained using anti-GFP (green channel) and NC82 antibodies (red channel). The processed images of the BMNs are published in Figure 3 and Figure 3 – figure supplement 1 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the driver line used in each figure panel.
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'InOmBMN_LexA_brain: Whole-brain confocal imaging of fly driver line InOmBMN_LexA expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies', GeneralModality:'other', Technique:'other', Other:'GAL4 and LexA expression' SPECIMEN METADATA: LocalID:'InOmBMN_LexA_brain', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w; VT017251_LexA (attP40)/+; 20XUAS-IVS- mCD8::GFP (attP2)/+', OrganName:'Brain', SampleLocalID:'20210306_VT017251_LexA_20xGFP_brain_1', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.5281/zenodo.6522291
title: Supplementary materials

description: This repository contains the data for the work "Adapting Multi-objectivized Software Configuration Tuning"
DOI: 10.5281/zenodo.6522292
title: Supplementary materials

description: This repository contains the data for the paper "Adapting Multi-objectivization for Configuration Tuning"
DOI: 10.5281/zenodo.8252954
title: Supplementary materials

description: This repository contains the data for the work "Adapting Multi-objectivized Software Configuration Tuning"
DOI: 10.5281/zenodo.8252997
title: Supplementary materials

description: This repository contains the data for the work "Adapting Multi-objectivized Software Configuration Tuning"
DOI: 10.5517/ccdc.csd.cc202g9w
title: CCDC 1849407: Experimental Crystal Structure Determination

description: Related Article: Mathias A. Ellwanger, Clara von Randow, Simon Steinhauer, Yunfei Zhou, Anja Wiesner, Helmut Beckers, Thomas Braun, Sebastian Riedel|2018|Chem.Commun.|54|9301|doi:10.1039/C8CC05233F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2790td
title: CCDC 2064253: Experimental Crystal Structure Determination

description: Related Article: Xin Li, Jing Zhao, Wen-Jie Shi, Sha Bai, Ying-Feng Han|2021|Organometallics|40|1474|doi:10.1021/acs.organomet.1c00119
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17909/8whb-1t59
title: NIRSpec PRISM data in Rieke paper

description: NIRSpec PRISM observations of G191 B2B, GD 153, G-31 and P330E used in Rieke et al 2023
DOI: 10.35077/age-hut
title: dBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line dBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies

description: Confocal z-stacks (.tiff stacks) transgenic driver lines that express in mechanosensory neurons innervating specific bristle populations on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by expressing mCD8::GFP under control of the UAS or LexAop promotors, and then stained using anti-GFP (green channel) and NC82 antibodies (red channel). The processed images of the BMNs are published in Figure 3 and Figure 3 – figure supplement 1 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the driver line used in each figure panel.
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'dBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line dBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies', GeneralModality:'other', Technique:'other', Other:'GAL4 and LexA expression' SPECIMEN METADATA: LocalID:'dBMN_spGAL4_brain', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w; VT019023_AD (attP40)/+; VT050279_DBD (attP2)/20XUAS-IVS- mCD8::GFP (attP2)', OrganName:'Brain', SampleLocalID:'20201217_VT050279_DBD_VT019023_AD_20x_GFP_brain_2', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.34740/kaggle/dsv/6352802
title: Amazon UK Grocery Dataset (Un)Supervised Learning
DOI: 10.5281/zenodo.8277005
title: Mild to moderate post-COVID- 19 alters markers of lymphocyte activation, exhaustion, and immunometabolic responses that can be partially associated by physical activity level— an observational sub-analysis fit- COVID study

description: Physical activity status seems to be protective against the severe form of SARS-CoV-2, reducing risk of hospitalization and worsened clinical outcome. However, the impact of physical activity after mild-to-moderate COVID-19 episode on immune and metabolic profiles is unknown. Therefore, this study aimed to evaluate if physical activity is associated with systemic and<br> cellular immunometabolic responses, in young adults after mild-to-moderate COVID-19 infection. Patients previously infected with COVID-19 and healthy controls were recruited for this cross-sectional observational study.
description: This study was funded by the National Council for Scientific and Technological Development (CNPq)—Brazil (Process number: 150760/2022-1) and the Coordination for the Improvement of Higher Education Personnel (CAPES), Brazil (code 001). F.S.L. was granted a research scholarship (PQ2) from the CNPq (302714/2021-9), BS., LM., CP, and CF are granted a research scholarship from São Paulo Research Foundation (FAPESP)/Brazil (Process Numbers: 2021/11932-8; 2019/25626-6; 2018/23402-0; 2019/26378-6, respectively). M S. was a recipient of donations within the #HCComvida campaign and FAPESP 2020/07765-6. IS was granted a research scholarship from São Paulo Research Foundation (FAPESP)/Brazil (Process Number, 2021/06338-0).
DOI: 10.5281/zenodo.8277004
title: Mild to moderate post-COVID- 19 alters markers of lymphocyte activation, exhaustion, and immunometabolic responses that can be partially associated by physical activity level— an observational sub-analysis fit- COVID study

description: Physical activity status seems to be protective against the severe form of SARS-CoV-2, reducing risk of hospitalization and worsened clinical outcome. However, the impact of physical activity after mild-to-moderate COVID-19 episode on immune and metabolic profiles is unknown. Therefore, this study aimed to evaluate if physical activity is associated with systemic and<br> cellular immunometabolic responses, in young adults after mild-to-moderate COVID-19 infection. Patients previously infected with COVID-19 and healthy controls were recruited for this cross-sectional observational study.
description: This study was funded by the National Council for Scientific and Technological Development (CNPq)—Brazil (Process number: 150760/2022-1) and the Coordination for the Improvement of Higher Education Personnel (CAPES), Brazil (code 001). F.S.L. was granted a research scholarship (PQ2) from the CNPq (302714/2021-9), BS., LM., CP, and CF are granted a research scholarship from São Paulo Research Foundation (FAPESP)/Brazil (Process Numbers: 2021/11932-8; 2019/25626-6; 2018/23402-0; 2019/26378-6, respectively). M S. was a recipient of donations within the #HCComvida campaign and FAPESP 2020/07765-6. IS was granted a research scholarship from São Paulo Research Foundation (FAPESP)/Brazil (Process Number, 2021/06338-0).
DOI: 10.35077/age-ice
title: pBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line pBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies

description: Confocal z-stacks (.tiff stacks) transgenic driver lines that express in mechanosensory neurons innervating specific bristle populations on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by expressing mCD8::GFP under control of the UAS or LexAop promotors, and then stained using anti-GFP (green channel) and NC82 antibodies (red channel). The processed images of the BMNs are published in Figure 3 and Figure 3 – figure supplement 1 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the driver line used in each figure panel.
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'pBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line pBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies', GeneralModality:'other', Technique:'other', Other:'GAL4 and LexA expression' SPECIMEN METADATA: LocalID:'pBMN_spGAL4_brain', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w; 28D07_AD (attP40); VT050279_DBD (attP2)/20XUAS-IVS- mCD8::GFP (attP2)', OrganName:'Brain', SampleLocalID:'20201007_VT050279_DBD_28D07_AD_20x_GFP_brain_3', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.6084/m9.figshare.22572883
title: Supporting Information for Jensen et al. (2023), <i>Geochemistry, Geophysics, Geosystems</i>

description: The Supporting Information contains our supporting text and figures. Data tables are included in a single and separate Excel file. References cited within SI text, figures, and tables are shown below as well as in the reference list of the main text.
DOI: 10.5281/zenodo.8276925
title: The promotional role of Mn in CO2 hydrogenation over Rh-based catalysts from a surface organometallic chemistry approach

description: Rh-based catalysts modified by transition metals have been intensively studied for CO2 hydrogenation due<br> to their high activity. However, understanding the role of promoters at the molecular level remains<br> challenging due to the ill-defined structure of heterogeneous catalysts. Here, we constructed welldefined RhMn@SiO2 and Rh@SiO2 model catalysts via surface organometallic chemistry combined with thermolytic molecular precursor (SOMC/TMP) approach to rationalize the promotional effect of Mn in CO2 hydrogenation. We show that the addition of Mn shifts the products from almost pure CH4 to a mixture of methane and oxygenates (CO, CH3OH, and CH3CH2OH) upon going from Rh@SiO2 to RhMn@SiO2. In situ X-ray absorption spectroscopy (XAS) confirms that the MnII is atomically dispersed in the vicinity of metallic Rh nanoparticles and enables to induce the oxidation of Rh to form the Mn–O–Rh interface under reaction conditions. The formed interface is proposed to be key to maintaining Rh+ sites, which is related to suppressing the methanation reaction and stabilizing the formate species as evidenced by in situ DRIFTS to promote the formation of CO and alcohols<br>
DOI: 10.5281/zenodo.8276926
title: The promotional role of Mn in CO2 hydrogenation over Rh-based catalysts from a surface organometallic chemistry approach

description: Rh-based catalysts modified by transition metals have been intensively studied for CO2 hydrogenation due<br> to their high activity. However, understanding the role of promoters at the molecular level remains<br> challenging due to the ill-defined structure of heterogeneous catalysts. Here, we constructed welldefined RhMn@SiO2 and Rh@SiO2 model catalysts via surface organometallic chemistry combined with thermolytic molecular precursor (SOMC/TMP) approach to rationalize the promotional effect of Mn in CO2 hydrogenation. We show that the addition of Mn shifts the products from almost pure CH4 to a mixture of methane and oxygenates (CO, CH3OH, and CH3CH2OH) upon going from Rh@SiO2 to RhMn@SiO2. In situ X-ray absorption spectroscopy (XAS) confirms that the MnII is atomically dispersed in the vicinity of metallic Rh nanoparticles and enables to induce the oxidation of Rh to form the Mn–O–Rh interface under reaction conditions. The formed interface is proposed to be key to maintaining Rh+ sites, which is related to suppressing the methanation reaction and stabilizing the formate species as evidenced by in situ DRIFTS to promote the formation of CO and alcohols<br>
DOI: 10.35077/age-ink
title: TasteBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line TasteBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies

description: Confocal z-stacks (.tiff stacks) transgenic driver lines that express in mechanosensory neurons innervating specific bristle populations on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by expressing mCD8::GFP under control of the UAS or LexAop promotors, and then stained using anti-GFP (green channel) and NC82 antibodies (red channel). The processed images of the BMNs are published in Figure 3 and Figure 3 – figure supplement 1 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the driver line used in each figure panel.
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'TasteBMN_spGAL4_brain: Whole-brain confocal imaging of fly driver line TasteBMN_spGAL4 expressing mCD8::GFP, stained using GFP (green channel) and NC82 (red channel) antibodies', GeneralModality:'other', Technique:'other', Other:'GAL4 and LexA expression' SPECIMEN METADATA: LocalID:'TasteBMN_spGAL4_brain', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w; VT023783_AD (attP40)/+; R11D02_DBD (attP2)/20XUAS-IVS- mCD8::GFP (attP2)', OrganName:'Brain', SampleLocalID:'20201005_11D02_DBD_VT023783_AD_20x_GFP_brain_2', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.5281/zenodo.7777459
title: Divergent life history strategies in congeneric hyperparasitoids

description: Datasets on realized lifetime fecundity and resting metabolic rate for the geline hyperparasitoids (Hymenoptera) Gelis agilis, Gelis acarorum, and Gelis areator.
DOI: 10.5281/zenodo.7777458
title: Divergent life history strategies in congeneric hyperparasitoids

description: Datasets on realized lifetime fecundity and resting metabolic rate for the geline hyperparasitoids (Hymenoptera) Gelis agilis, Gelis acarorum, and Gelis areator.
DOI: 10.5281/zenodo.8276194
title: Transcriptomics-guided identification of an algicidal protease of the marine bacterium Kordia algicida OT-1

description: Transcriptomic comparison of active and inactive cultures of Kordia algicida OT-1 (sequencing and analysis performed by Novogene)