cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15095512.v1
title: Additional file 2 of DNA methylation atlas and machinery in the developing and regenerating annelid Platynereis dumerilii

description: Additional file 2: Tables S1-S8. Supplementary Tables. Table S1: CpG o/e ratios obtained with Notos. Table S2: LUMA data. Table S3: Methylation levels of stretches of CpGs in Pdum-Histone H4 and Pdum-14-3-3-like genes defined by bisulfite pyrosequencing at different stages of the P. dumerilii life cycle. Table S4: Sequences used for phylogenetic analyses. Table S5: Lethality and autotomy induced by Decitabine treatment (short-term experiments). Table S6: Lethality and autotomy induced by Decitabine treatment (long-term experiments). Table S7: Primers used for P. dumerilii gene cloning and bisulfite pyrosequencing. Table S8: Databases used to retrieve sequences for phylogenetic analyses.
DOI: 10.6084/m9.figshare.15093993.v2
title: DIC-calibrated mechanical testing data

description: The DIC related data
DOI: 10.6084/m9.figshare.15093993.v1
title: DIC-calibrated mechanical testing data

description: The DIC related data
DOI: 10.34848/fk2/9kome5/wow0lh
title: Encuesta Recicladores.pdf

description: Cuestionario encuesta para recicladores y bodegas
DOI: 10.34848/fk2/9kome5/cj42pw
title: EFI Proyecto 1 CI Org Reciclaje.docx

description: Consentimiento informado, bodegas
DOI: 10.34848/fk2/9kome5/llc24c
title: Informe de la experiencia en campo - Bioestadística.docx

description: Informe del trabajo de campo por la empresa encuestadora
DOI: 10.34848/fk2/9kome5/awhok4
title: EFI Proyecto 1 CI Asociaciones Tel.docx

description: Consentimiento informado, asociaciones de recicladores encuesta telefónica
DOI: 10.34848/fk2/9kome5/s9arki
title: recicladores.tab

description: Base de datos Recicladores (Anonimizada) DTA con la información de la encuesta
DOI: 10.34848/fk2/9kome5/psdhan
title: Encuesta Asociaciones Reciclaje.pdf

description: Cuestionario para asociaciones (versión telefónica)
DOI: 10.34848/fk2/9kome5/vxsbpb
title: WP1-2020-002.pdf

description: PDF con el informe de resultados de la encuesta
DOI: 10.34848/fk2/9kome5/5ez3nr
title: Formato Consentimiento Oral Informado Recicladores.docx

description: Consentimiento informado, recicladores
DOI: 10.34848/fk2/9kome5/xyazs5
title: recicladores_recoleccion_materiales.tab

description: Lista de materiales por reciclador
DOI: 10.34848/fk2/9kome5/phjjs5
title: ecas_afirmaciones_decreto.tab

description: Lista de afirmaciones decreto 596 por bodega y asociación
DOI: 10.34848/fk2/9kome5/uwngan
title: ecas_MaterialesComercializa.tab

description: Lista de materiales que se comercializan por bodega y asociación
DOI: 10.34848/fk2/9kome5/39bqiv
title: ecas_anonima.tab

description: Base de datos Bodegas y Asociaciones (Anonimizada)
DOI: 10.6084/m9.figshare.13661315
title: Acoustic diversity dataset

description: Dataset and code for "<i>A machine learning approach for classifying and quantifying acoustic diversity</i>"<br><b></b>
DOI: 10.6084/m9.figshare.13661315.v10
title: Acoustic diversity dataset

description: Dataset and code for "<i>A machine learning approach for classifying and quantifying acoustic diversity</i>"<br><b></b>
DOI: 10.6073/pasta/13494fca945dc9b38e7383729cc1b568
title: A search index for the ecocomDP R package

description: This data package contains summary information of datasets in the ecocomDP format published by EDI and NEON. This summary information is formatted in a search index used by the search function of the ecocomDP R package.
DOI: 10.14457/cu.the.1987.178
title: การสำรวจประเภททักษะกระบวนการวิทยาศาสตร์ในหนังสือเรียนวิชาวิทยาศาสตร์กายภาพชีวภาพ ชั้นมัธยมศึกษาตอนปลาย
DOI: 10.14457/cu.the.1987.179
title: โปรแกรมสำเร็จรูปทางสถิติที่ไม่ใช่พารามิเตอร์
DOI: 10.14457/cu.the.1987.180
title: การพัฒนาหลักสูตรฝึกอบรมเสริมสมรรถภาพการทำงานเป็นกลุ่มสำหรับผู้นำท้องถิ่นระดับหมู่บ้านในประเทศไทย
DOI: 10.14457/cu.the.1987.181
title: การใช้ไมโครคอมพิวเตอร์ในการจำลองแบบการเดินทางในกรุงเทพมหานคร และพื้นที่ใกล้เคียง
DOI: 10.5517/ccdc.csd.cc27xxnr
title: CCDC 2083375: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxps
title: CCDC 2083376: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxqt
title: CCDC 2083377: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxrv
title: CCDC 2083378: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxsw
title: CCDC 2083379: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxtx
title: CCDC 2083380: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxvy
title: CCDC 2083381: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxwz
title: CCDC 2083382: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.5517/ccdc.csd.cc27xxx0
title: CCDC 2083383: Experimental Crystal Structure Determination

description: Related Article: Tomoyuki Takeyama, Satoru Tsushima, Koichiro Takao|2021|Inorg.Chem.|60|11435|doi:10.1021/acs.inorgchem.1c01449
DOI: 10.6084/m9.figshare.13850324
title: Individual-level specialisation and interspecific resource partitioning in bees revealed by pollen DNA metabarcoding

description: Data accompanying the following manuscript:Klečka J., Mikát M., Koloušková P., Hadrava J., Straka J. (2021) Individual-level specialisation and interspecific resource partitioning in bees revealed by pollen DNA metabarcoding. bioRxiv 2021.08.01.454648 https://doi.org/10.1101/2021.08.01.454648<br><br>
DOI: 10.6084/m9.figshare.13850324.v1
title: Individual-level specialisation and interspecific resource partitioning in bees revealed by pollen DNA metabarcoding

description: Data accompanying the following manuscript:Klečka J., Mikát M., Koloušková P., Hadrava J., Straka J. (2021) Individual-level specialisation and interspecific resource partitioning in bees revealed by pollen DNA metabarcoding. bioRxiv 2021.08.01.454648 https://doi.org/10.1101/2021.08.01.454648<br><br>
DOI: 10.14457/cu.the.1987.182
title: ความต้องการการพัฒนาวิชาชีพของครูพลศึกษาในโรงเรียนมัธยมศึกษา ในเขตการศึกษา 1
DOI: 10.6084/m9.figshare.15060138.v1
title: The Pandemic Experience Corpus (June - July 2020)

description: Datasets each containing responses in a different language:- English (EN.csv)- Japanese (JP.csv) + its English translation (JP2EN.csv)- Spanish (ES.csv) + its English translation (to be uploaded in the near future)<br>
DOI: 10.15468/2sjpbp
title: Glyptotermes chiraharitae n. sp., a new dampwood termite species (Isoptera: Kalotermitidae) from India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Amina, Poovoli, Rajmohana, Keloth (2016): Glyptotermes chiraharitae n. sp., a new dampwood termite species (Isoptera: Kalotermitidae) from India. Zoosystema 38 (3): 309-316, DOI: 10.5252/z2016n3a2, URL: http://dx.doi.org/10.5252/z2016n3a2
DOI: 10.6084/m9.figshare.15074544.v2
title: Datasets

description: <b>The effect of ingestion of Red dragon fruit extract on levels of malondialdehyde and superoxide dismutase after strenuous exercise in rats (<i>Rattus norvegicus</i>)</b> Gusbakti R<sup>1</sup>, Syafrudin Ilyas<sup>2</sup>, I Nyoman Ehrich Lister<sup>3</sup>, Chrismis N Ginting<sup>4</sup><b><br></b><b>Background: </b>Prolonged activation of skeletal muscles causes a decrease in the production of force known as fatigue. Exercise with strenuous intensity causes an increase in Reactive Oxygen Species (ROS). An increase in free radicals causes oxidative stress resulting in damage to cell function to mitochondrial dysfunction, and fatigue. This study aimed to determine the antioxidant potential of red dragon fruit (RDF) to delay fatigue due to oxidative stress, which improves cell function in mitochondria. <b>Methodology: </b>The subjects of this study consisted of twenty-five male rats <i>(Rattus norvegicus)</i> aged three months with an average weight of 200 grams. The subjects were further divided into 5 groups consist of group K1 was N.A. (No Activity) but drinking and eating. Group K2 performed strenuous exercise without Red Dragon Fruit (NRDF) treatment. Groups 3, 4, and 5 performed strenuous exercise and were treated with 75 mg kg<sup>-1</sup>.bw, 150 mg kg<sup>-1</sup>.bw, and 300 mg kg<sup>-1</sup>.bw of RDF extract, respectively. The exercise for the rats involved intense swimming for 20 minutes every day, four days a week for 31 days. Malondialdehyde (MDA) was measured with the ELISA method and histopathology (H&E staining) for muscle soleus and lung tissue. <b>Results: </b>Strenuous exercise followed by RDF extract ingestion was compared for fatigue in terms of duration and time; before (24.55±1.38 minute) and after (95.31±7.82 minute) and led to a significant difference of 39% (p&lt;0.01). The study also compared MDA before and after RDF extract ingestion in the K2 vs. the P1 group (p&lt;0.05). At the same time, P2 differed more significantly (p&lt;0.01). This indicated a spread of free radicals and featured histopathological damage of muscle cells. However, ingestion of RDF extract leads to improvement of soleus muscle cells; thus, repairs cell function, delaying fatigue. <b>Conclusion</b><b>: </b>This study confirmed that strenuous exercise which causes an increase in ROS intensifies free radicals with RDF extract ingestion and declines oxidative stress , repairing cell function and delaying fatigue. Keywords: Red Dragon Fruit (RDF), Strenuous exercise, MDA, Improved cell function, Fatigue
DOI: 10.25345/c5bg1t
title: MassIVE MSV000087934 - GNPS xiaokewan traditional Chinese medicine
title: WWWWW ADADA AFFFGJL EFIIIONFM WEINSNJF WOKKONGINW ISOWNDONMSNF, WNFANFANF
DOI: 10.18112/openneuro.ds003007.v1.0.1
title: Two sessions of resting state with closed eyes for patients with depression in treatment course (NFB, CBT or No treatment groups)
DOI: 10.6084/m9.figshare.15096669
title: Supplementary Material for: YAP1 Overexpression Is Associated with Kidney Dysfunction in Lupus Nephritis

description: <b><i>Objective:</i></b> The goal of the present study was to determine the expression of yes-associated protein 1 (YAP1) in renal tissues of mice with lupus nephritis (LN) and elucidate its role in the progression of renal fibrosis. <b><i>Methods:</i></b> C57BL/6 mice and MRL/lpr mice were selected for experimental comparison. Mouse kidney tissues were removed and sectioned for hematoxylin and eosin staining, Masson’s trichome staining, Sirius staining, and immunohistochemistry. The mRNA and protein levels of YAP1 in mouse kidney tissues were detected, and the correlation between YAP1 and fibronectin (FN) mRNA levels was analyzed. Mouse renal epithelial cells were used for in vitro experiments. After transfection and stimulation, the cells were divided into 4 groups, namely the C57BL/6 serum group (group 1), the MRL/lpr serum group (group 2), the MRL/lpr serum + siRNA-negative control group (group 3), and the MRL/lpr serum + siRNA-YAP1 group (group 4). Epithelial-mesenchymal transition (EMT) markers in each group were detected by Western blotting and immunofluorescence staining. Serum creatinine, blood urea nitrogen, and urinary protein levels were detected and assessed for their correlation with YAP1 mRNA levels by Spearman’s analysis. <b><i>Results:</i></b> Compared to C57BL/6 mice, MRL/lpr mice exhibited obvious changes in fibrosis in renal tissues. In addition, YAP1 expression was significantly higher in the renal tissues of MRL/lpr mice than in those of C57BL/6 mice, and YAP1 mRNA levels were positively correlated with those of FN. YAP1 silencing in lupus serum-stimulated cells could effectively relieve serum-induced EMT. Finally, we observed that YAP1 mRNA levels in mouse kidney tissue were significantly and positively correlated with the degree of renal function injury. <b><i>Conclusion:</i></b> YAP1 expression in the kidney tissues of LN mice was higher than that observed in normal mice, indicating that YAP1 may play an important role in the occurrence and development of LN.
DOI: 10.6084/m9.figshare.15094219
title: Chronic Recording of HVC in Free Behaving Zebra FInch with Behaviors Hand Annotated

description: We recorded extracellularly from HVC nucelus of birds chronically implanted with 16/32 site Si Probes, while they freely sang, simultaneously with their song (recorded through an Earthworks m-30 microphone).<br>The vocal behavior of the subjects were manually annotated using Praat linguistics software.<br>We present the neural recordings, the full microphone recordings, the timestamps of the onset and termination of each vocalization, and behavioral labels of each vocalization. <br>The data is formated to work with the BirdSongToolbox package (https://github.com/Darilbii/BirdSongToolbox)
DOI: 10.6084/m9.figshare.15095580.v1
title: Annotated .gbf files

description: These is all annotated by prokka .gbf files used in this paper
DOI: 10.6084/m9.figshare.15095580
title: Annotated .gbf files

description: These is all annotated by prokka .gbf files used in this paper
DOI: 10.6084/m9.figshare.15094219.v1
title: Chronic Recording of HVC in Free Behaving Zebra FInch with Behaviors Hand Annotated

description: We recorded extracellularly from HVC nucelus of birds chronically implanted with 16/32 site Si Probes, while they freely sang, simultaneously with their song (recorded through an Earthworks m-30 microphone).<br>The vocal behavior of the subjects were manually annotated using Praat linguistics software.<br>We present the neural recordings, the full microphone recordings, the timestamps of the onset and termination of each vocalization, and behavioral labels of each vocalization. <br>The data is formated to work with the BirdSongToolbox package (https://github.com/Darilbii/BirdSongToolbox)
DOI: 10.6084/m9.figshare.15095535
title: assemblies

description: These is assemblies which were used in this paper
DOI: 10.6084/m9.figshare.15095535.v1
title: assemblies

description: These is assemblies which were used in this paper
DOI: 10.5281/zenodo.5154774
title: Daily water quality data sets of the nine U.S. watersheds

description: US_daily_WQ_datasets_2.xlsx contains daily water quality (WQ) and discharge data from the nine watersheds in the United States. The data value of -999 means missing observation. The names (USGS station numbers) of nine WQ monitoring sites are Blanchard River (04189000), Cuyahoga River (0428000), Great Miami River (03271500), Honey Creek (04197100), Maumee River (04193500), Muskingum River (03150000), Portage River (04195500), Rock Creek (04197170), and Tiffin River (04185000). Daily WQ data were composed by following the procedure described in the Appendix S1 in Hirsch (2014). The all WQ data river were retrieved from the Heidelberg University's National Center for Water Quality Research site (https://ncwqr.org/monitoring/data) and discharge data were downloaded from the USGS National Water Information System (http://waterdata.usgs.gov/nwis/ or https://doi.org/10.5066/F7P55KJN) in 2020. All the daily discharge data were acquired via the USGS National Water Information System. These data were used to evaluate the performance of the unbiased load estimates and confidence intervals of river loads based on the rating curve method using rejection sampling in the listed article below. To maintain the traceability of the proposed load estimation method and replicability of the results in the article, the authors of the article upload the data used in this repository.
DOI: 10.5281/zenodo.5154773
title: Daily water quality data sets of the nine U.S. watersheds

description: US_daily_WQ_datasets_2.xlsx contains daily water quality (WQ) and discharge data from the nine watersheds in the United States. The data value of -999 means missing observation. The names (USGS station numbers) of nine WQ monitoring sites are Blanchard River (04189000), Cuyahoga River (0428000), Great Miami River (03271500), Honey Creek (04197100), Maumee River (04193500), Muskingum River (03150000), Portage River (04195500), Rock Creek (04197170), and Tiffin River (04185000). Daily WQ data were composed by following the procedure described in the Appendix S1 in Hirsch (2014). The all WQ data river were retrieved from the Heidelberg University's National Center for Water Quality Research site (https://ncwqr.org/monitoring/data) and discharge data were downloaded from the USGS National Water Information System (http://waterdata.usgs.gov/nwis/ or https://doi.org/10.5066/F7P55KJN) in 2020. All the daily discharge data were acquired via the USGS National Water Information System. These data were used to evaluate the performance of the unbiased load estimates and confidence intervals of river loads based on the rating curve method using rejection sampling in the listed article below. To maintain the traceability of the proposed load estimation method and replicability of the results in the article, the authors of the article upload the data used in this repository.
DOI: 10.6084/m9.figshare.14195924.v1
title: Monthly direct and indirect greenhouse gases emissions from household consumption in the major Japanese cities

description: Including both direct and indirect emission inventories, direct emission intensities, household size information and mapping process.
DOI: 10.6084/m9.figshare.15072261
title: experimental data

description: <b>data of the research</b>
DOI: 10.6084/m9.figshare.15072261.v2
title: experimental data

description: <b>data of the research</b>
DOI: 10.6084/m9.figshare.15072261.v1
title: Effects of Monochromatic Blue Light on Reducing the Adverse Impact of Induced Cyclic Chronic Heat Stress During the Thermal Manipulation of Broiler Embryos

description: <b>data of the research</b>
DOI: 10.5281/zenodo.5154799
title: Xin_ACP_2021_Convection_Effect_data

description: Core data used in Xin_ACP_2021_Convection_Effect repository. For more detail, please check the README.md file.
DOI: 10.17043/lundevall-zara-2021-asko-methane-1
title: Methane concentrations from Askö shallow inshore areas in the Baltic Sea, June to October 2019
DOI: 10.5281/zenodo.5154787
title: Maverick-bfw/Flow_py_inputs_results: First releases

description: Releases of data and simulation results to recreate figures in "Flow-Py v1.0: A customizable, open-source simulation tool to estimate runout and intensity of gravitational mass flows"Jan-Thomas
DOI: 10.5281/zenodo.5154786
title: Maverick-bfw/Flow_py_inputs_results: First releases

description: Releases of data and simulation results to recreate figures in "Flow-Py v1.0: A customizable, open-source simulation tool to estimate runout and intensity of gravitational mass flows"Jan-Thomas
DOI: 10.6084/m9.figshare.15082524
title: The signal transducer CD24 suppresses the germ cell program and promotes an ectodermal rather than mesodermal cell fate in embryonal carcinomas

description: Testicular germ cell tumors (GCTs) are stratified into seminomas and non-seminomas. Seminomas share many histological and molecular features with primordial germ cells, whereas the non-seminoma stem cell population – embryonal carcinoma (EC) – is pluripotent and thus able to differentiate into cells of all three germ layers (teratomas). Furthermore, ECs are capable of differentiating into extra-embryonic lineages (yolk-sac tumors, choriocarcinomas). In this study, we deciphered the molecular and (epi)genetic mechanisms regulating expression of CD24, a highly glycosylated signaling molecule upregulated in many cancers. CD24 is overexpressed in ECs compared to other GCT entities and can be associated with an undifferentiated pluripotent cell fate. We demonstrate that CD24 can be transactivated by the pluripotency factor SOX2, which binds in proximity to the CD24 promoter. In GCTs, CD24 expression is controlled by epigenetic mechanisms, i.e. histone acetylation, since CD24 can be induced by the application histone deacetylase inhibitors. Vice versa, CD24 expression is downregulated upon inhibition of histone methyltransferases, E3-ubiquitin ligases or bromodomain (BRD) proteins. Additionally, three-dimensional (3D) co-cultivation of EC cells with microenvironmental cells, such as fibroblasts, endothelial or immune cells, reduced CD24 expression, suggesting that crosstalk with the somatic microenvironment influences CD24 expression. In a CRISPR/Cas9-deficiency model, we demonstrate that CD24 fulfils a bivalent role in differentiation via regulation of homeobox, phospho- and glycoproteins, i.e. it is involved in suppressing the germ cell/spermatogenesis program and mesodermal/endodermal differentiation, while poising the cells for ectodermal differentiation. Finally, blocking CD24 by a monoclonal antibody enhanced sensitivity towards cisplatin in EC cells, including cisplatin-resistant subclones, highlighting CD24 as a putative target in combination with cisplatin.
DOI: 10.6084/m9.figshare.15082524.v2
title: The signal transducer CD24 suppresses the germ cell program and promotes an ectodermal rather than mesodermal cell fate in embryonal carcinomas

description: Testicular germ cell tumors (GCTs) are stratified into seminomas and non-seminomas. Seminomas share many histological and molecular features with primordial germ cells, whereas the non-seminoma stem cell population – embryonal carcinoma (EC) – is pluripotent and thus able to differentiate into cells of all three germ layers (teratomas). Furthermore, ECs are capable of differentiating into extra-embryonic lineages (yolk-sac tumors, choriocarcinomas). In this study, we deciphered the molecular and (epi)genetic mechanisms regulating expression of CD24, a highly glycosylated signaling molecule upregulated in many cancers. CD24 is overexpressed in ECs compared to other GCT entities and can be associated with an undifferentiated pluripotent cell fate. We demonstrate that CD24 can be transactivated by the pluripotency factor SOX2, which binds in proximity to the CD24 promoter. In GCTs, CD24 expression is controlled by epigenetic mechanisms, i.e. histone acetylation, since CD24 can be induced by the application histone deacetylase inhibitors. Vice versa, CD24 expression is downregulated upon inhibition of histone methyltransferases, E3-ubiquitin ligases or bromodomain (BRD) proteins. Additionally, three-dimensional (3D) co-cultivation of EC cells with microenvironmental cells, such as fibroblasts, endothelial or immune cells, reduced CD24 expression, suggesting that crosstalk with the somatic microenvironment influences CD24 expression. In a CRISPR/Cas9-deficiency model, we demonstrate that CD24 fulfils a bivalent role in differentiation via regulation of homeobox, phospho- and glycoproteins, i.e. it is involved in suppressing the germ cell/spermatogenesis program and mesodermal/endodermal differentiation, while poising the cells for ectodermal differentiation. Finally, blocking CD24 by a monoclonal antibody enhanced sensitivity towards cisplatin in EC cells, including cisplatin-resistant subclones, highlighting CD24 as a putative target in combination with cisplatin.