cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5fj6t/43
title: beetle_OTU_table_4Dryad
DOI: 10.5061/dryad.5r2q8t8/7
title: Burt_CC-DiveSurveys2013-2016_Site_Sum_stats

description: This data file has information summarized for each annual subtidal survey site (n=11) across all survey years (n=4) for sea otter occupation, Pycnopodia biomass, density and biomass of red sea urchins (sm, med, lg), kelp density. Surveys conducted on the central coast of BC (2013-2016).
DOI: 10.5061/dryad.5r2q8t8/8
title: Burt_CC-DiveSurveys2013-2016_UrchSize

description: This data file is used for running the simulation code to estimate urchin growth transition probabilities (details in electronic supplementary material, Appendix M1).
This data file is a continuous list containing every single entry for every recorded and measured (to the nearest cm) red urchin (n=3451) across all quadrats (n=18 per site, each 1x1m) from all sites (n=11) in all years (n=4, 2013-2016).
DOI: 10.5061/dryad.5r2q8t8/9
title: Burt_et_al_analysis_code

description: This is an R markdown file that contains all the code to run all of the analyses in the Burt et al. paper "Sudden collapse of a mesopredator reveals its complementary role in mediating rocky reef regime shifts."
DOI: 10.5061/dryad.63v835k/1
title: Valkama-a-meta-analysis-on-nitrogen-retention-by-buffer-zones.xls

description: The database used for meta-analysis consisted of 46 studies published between 1980 and 2017 in peer-reviewed scientific journals. The studies assessed the buffer zone effects on nitrate-N or the total N in the surface runoff or on nitrate-N in the groundwater. Data were extracted from tables and digitized from figures using the ImageJ 1.37 program.
DOI: 10.5061/dryad.7j699nc/1
title: DTCWT-GOF-NeighFilt

description: Data related to my article titled as "Dual tree complex wavelet transform based signal denoising using Neighbourhood filtering and goodness of fit test". This file contains Matlab signal denoising software and all the signals used in this study.
DOI: 10.5061/dryad.7q571d1/1
title: Reconciling multiple impacts of nitrogen enrichment on soil carbon: plant, microbial, and geochemical controls
DOI: 10.5061/dryad.8206227/57
title: S18A-Neoaves-Conflict-Region-Overlap-Split-Concept-Resolution

description: S18A Text. Reasoner input constraints for the 2015./2014.Neoaves alignment, under split-concept resolution, limited to the main conflict region. Includes information on run commands; and 0 instances of "no coverage". File format: .txt.
DOI: 10.5061/dryad.8206227/58
title: S18B-Neoaves-Conflict-Region-Overlap-Split-Concept-Resolution

description: S18B Fig. Input visualization for the 2015./2014.Neoaves alignment, under split-concept resolution, limited to the main conflict region. File format: .pdf.
DOI: 10.5061/dryad.8206227/59
title: S18C-Neoaves-Conflict-Region-Overlap-Split-Concept-Resolution-0-mncb

description: S18C Fig. Alignment visualization for the 2015./2014.Neoaves alignment, under split-concept resolution, limited to the main conflict region. File format: .pdf.
DOI: 10.5061/dryad.8206227/60
title: S18D-Neoaves-Conflict-Region-Overlap-Split-Concept-Resolution-mir

description: S18D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Neoaves alignment, under split-concept resolution, limited to the main conflict region. Total = 441 MIR. File format: .csv.
DOI: 10.5061/dryad.8206227/61
title: S19-OToL_Visualization_2015.PEA_Conflict_On_2014.JEA

description: S19 File. Output tree file (visualized using FigTree) of the OToL conflict visualization method, with 2014.JEA as the primary source phylogeny and 2015.PEA as the alternative. File format: .tre.
DOI: 10.5061/dryad.8206227/62
title: S20-OToL_Visualization_2014.JEA_Conflict_On_2015.PEA

description: S20 File. Output tree file (visualized using FigTree) of the OToL conflict visualization method, with 2015.PEA as the primary source phylogeny and 2014.JEA as the alternative. File format: .tre.
DOI: 10.5061/dryad.88s50/1
title: ME_ST_XX_00001

description: Individual ID: Clam 1 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.8fp2v06/1
title: Giraudeau et al. 2018 Behavioral Ecology Field Data

description: Includes data on carotenoid-based plumage hue for three separate regions (crown, breast, rump), body mass, site of capture, and urbanization indices for each individual bird.
DOI: 10.5061/dryad.8fp2v06/2
title: Giraudeau et al. 2018 Behavioral Ecology Mate Choice Data

description: Data file includes, for each female, the capture site, observation and experiment number, observation date, and time near each male and the respective male's identity and plumage hue.
DOI: 10.5061/dryad.c2722m0/1
title: Nitrogen loads

description: Daily nitrogen loads from rivers, industry and wastewater treatment plants discharging to the Adelaide coast in 1975, including coordinates. Loads calculated from data compiled during the Adelaide Coastal Waters Study and published by Wilkinson, J., White, N., Smythe, L., Hutson, J., Bestland, E., Simmons, C., Lamontagne, S. & Fallowfield, H. (2005) Volumes of inputs, their concentrations and loads received by Adelaide metropolitan coastal waters. ACWS Technical Report No. 18 prepared for the Adelaide Coastal Waters Study Steering Committee. pp. 83. Flinders Centre for Coastal and Catchment Environments (Flinders University of SA), Adelaide, South Australia.
DOI: 10.5061/dryad.c2722m0/2
title: Seagrass extent

description: GIS file showing seagrass cover in Adelaide in 1977 according to Hart, D. (1997) Near-shore seagrass change between 1949 and 1996 mapped using digital aerial orthophotography, metropolitan Adelaide area, Largs Bay-Aldinga, South Australia. A report prepared for the South Australian EPA. pp. 12. Department of Environment and Natural Resources, Adelaide, South Australia.
DOI: 10.5061/dryad.c2722m0/3
title: Seagrass Loss

description: GIS file showing seagrass loss in Adelaide between 1970 and 1977 according to Hart, D. (1997) Near-shore seagrass change between 1949 and 1996 mapped using digital aerial orthophotography, metropolitan Adelaide area, Largs Bay-Aldinga, South Australia. A report prepared for the South Australian EPA. pp. 12. Department of Environment and Natural Resources, Adelaide, South Australia.
DOI: 10.5061/dryad.c2722m0/4
title: ASL code

description: Computer code to calculate area specific loads in coastal areas.
DOI: 10.5061/dryad.ds8fk04/2
title: generate_pedigrees_genos

description: R functions used to generate pedigrees and genotypes, and to estimate rbeta, ru and rw
DOI: 10.5061/dryad.f4j738r/1
title: Data Archive for Arroyo et al.: Ovule bet-hedging at high elevation in the South American Andes.

description: This file contains data on alpine vegetation belt, life history, flowering period, pollinators, level of pollinator efficiency, level of pollination generalization as measured by Simpson´s Diversity Index, ovule number per flower and floral biomass for 174 above-treeline species sampled between 2100 and 3650 m.a.s.l. in the central Chilean Andes (33°S).
DOI: 10.5061/dryad.h2h253r/1
title: Data set
DOI: 10.5061/dryad.hp24b6f/1
title: GPP_NICHE_WIDTH

description: This table contains the primary data used to create the results in the article "Primary productivity is related to niche width in the Australian Wet Tropics" in Global Ecology and Biology. It represents 510 ecological plot sites in the Wet Tropics. It contains columns for gross primary productivity (GPP_0112), rainfall (RAIN_0112), temperature (TEMP_0112) and the mean (MN), median (MD) and standard deviation (SD) in niche widths (NW) of tree species recorded at each site. See the methods sections in the GEB article for more details.
DOI: 10.5061/dryad.m086rm8/1
title: S1

description: Character list used in the cladistic analysis
DOI: 10.5061/dryad.m086rm8/2
title: Karydomys cladistic analysis

description: Character-taxon matrix in TNT format used in the cladistic analysis of Karydomys presented in this paper.
DOI: 10.5061/dryad.m453vh1/1
title: Supporting data for "Simultaneous radiation of bird and mammal lice following the K-Pg boundary"

description: This zip file contains the supporting alignments and trees for the publication "Simultaneous radiation of bird and mammal lice following the K-Pg boundary" by  Johnson, Kevin, Nguyen, Nam-phuong, Sweet, Andrew, Boyd, Bret, Warnow, Tandy, Allen, Julie.

The files are:

initial.fasta - The concatenated alignment of the 1st and 2nd codon positions of 1,107 single copy
                genes, grouped by the partitions from the GTR+alpha rate parameters.
initial.partition - The partitions of the initial.fasta alignment.
RAxML_bipartitions.RAXML.BOOTSTRAP - The RAxML tree estimated from the partitioned concatenated alignment, with bootstrap support.
genes.zip - An archive containing the individual gene alignments used to create the concatenated alignment, where
               each folder is a gene, and the contents are:
               FNA2AA.fasta - The UPP alignment after translating AA coding sequences into nucleotides
               FNA2AA.no3rd.fasta - The UPP alignment after removing 3rd codon positions.
astral/astral.tree - The ASTRAL tree estimated from the RAxML gene trees
astral/raxml.ml.trees - The RAxML trees estimated from the individual gene alignments
DOI: 10.5061/dryad.q7p1126/1
title: SelectionMixedMating_data

description: Excel file containing series for each figure found in both the main text and in the appendices.
DOI: 10.5061/dryad.rq4b2n6/1
title: SMNK PAL 1133 sacrum

description: CT scans from the sacrum of the ornithocheird pterosaurs _Coloborhynchus robust_, SMNK PAL 1133. Scans were taken at the u-VIS X-Ray Imaging Centre, University of Southampton.
DOI: 10.5061/dryad.rq4b2n6/2
title: 20150903_HUTCH_792_EM_Box2_10_SMNK1133_718x1422x515x8bit
DOI: 10.5061/dryad.rq4b2n6/3
title: 20150903_HUTCH_792_EM_Box2_03_SMNK1133_438x325x447x8bit

description: CT scans from cervical vertebra 7 of SMNK PAL 1133, scanned at the u-VIS Imaging Centre, University of Southampton.
DOI: 10.5061/dryad.rq4b2n6/4
title: 20150903_HUTCH_792_EM_Box2_04_SMNK1133_338x371x444x8bit

description: CT scans of cervical vertebra 6 from SMNK PAL 1133, _Coloborhynchus robust_, completed at u-VIS Imaging Centre, University of Southampton
DOI: 10.5061/dryad.rq4b2n6/5
title: 20150903_HUTCH_792_EM_Box2_05_SMNK1133_330x384x377x8bit

description: CT scans of cervical vertebra 3 from SMNK PAL 1133 _Coloborhynchus robust_, scanned at u-VIS X-Ray Imaging Centre, University of Southampton
DOI: 10.5061/dryad.s22s280/1
title: dataGregrEcography_2018

description: Includes: 1) Kelp survey and remote sensing data as csv files; 2) various processed results in RData format.
DOI: 10.5061/dryad.t3n7883/1
title: Loboda_2018_species_data

description: The zip file contains two tables; one for the species data and one with the site corrdinates and the environmental variables.
DOI: 10.5061/dryad.tk033rk/1
title: Verschut_etal_Ecol_Evol_2018

description: Data file contains the oviposition rates of mated Drosophila melanogaster females on apple and banana oviposition substrates divided over two patches.
DOI: 10.17632/74r8sc43gp.1
title: Data for: Recyclable supported Pd-NHC catalytic systems for the copper-free Sonogashira cross-coupling under continuous flow

description: Experimental procedure for the immobilisation of recyclable catalytic systems is described. TGA data for the silica, alumina and titania supported catalyts is given. Experimental procedure for optimization and performance of Sonogashira reaction in bathc and under continuous flow using supported catalysts is described. Recyclability experiments are described. Sonogashira coupling products data is reported along with the corresponding NMR spectra.
DOI: 10.17632/77z2wdzbym.1
title: Data for: BIGO: A web application to analyse gene enrichment analysis results

description: We include the gene sets that are used in the experimental part of our research paper.
DOI: 10.17632/kf3zv6m3jk.1
title: Data for: Removal of mineral colloids from water by oscillating flows and grouping

description: Raw data of the figures presented in the manuscript.
DOI: 10.17632/rr26hmgtk9.1
title: Data for: What drives trend-following profits?

description: The data set includes the complete input data and results for two papers: "What drives trend-following profits?" and "Evaluating active investing". There is also a file with detailed instructions of how to use the data (i.e., Instructions.doc).
DOI: 10.17632/xtrg2gcrr5.1
title: Data for: Removal of mineral colloids from water by oscillating flows and grouping

description: This video, filmed with Go-Pro Hero2, is an overview of the grouping process in a laboratory experiment conducted in a 2 Liter beaker with initial turbidity of 50 NTU. The time shown in the down right corner of the presentation is in minutes (high speed editing). The experiment consisted of 30 minutes of oscillations. The white sedimentation which accumulates in the bottom of the beaker are the aggregates which are formed and settle due to the oscillation process in distinct settling zones. The shape of "lungs" formed by the aggregates sedimentation is representative for all experiments.
DOI: 10.5061/dryad.1k8738h/1
title: Supermarix of RADseq assembling

description: Supermarix of RADseq assembling for delimitation of Phoebe bournei and Phoebe zhennan.
DOI: 10.5061/dryad.1k8738h/2
title: unlinked SNP for structure analysis
DOI: 10.5061/dryad.1k8738h/3
title: Raw data for the morphological analysis
DOI: 10.5061/dryad.202m6h0/2
title: Electrophysiological data from Kornienko et al., 2018

description: Data from: Non-rhythmic head-direction cells in the parahippocampal region are not constrained by attractor network dynamics
DOI: 10.5061/dryad.2ch6ks8/1
title: D.A: Plant metabolic responses to herbivory

description: The table provides the following information for each of the Silene latifolia individuals in the experiment: distribution range (range; native: eu, invasive: us), population affiliation (corresponds to population IDs in Fig. S1, and Table S2), maternal family of the mother in the first generation crossing (maternal_family, a-e), applied breeding treatment (breeding_tmt; outbreeding: o, inbreeding: i), applied herbivory treatment (herbivory_tmt; control: c, herbivory: h) and the intensity (i.e., peak area) of each metabolic feature (characterized by retention time [min] and mass/charge ratio [m/z]).
DOI: 10.5061/dryad.2ch6ks8/2
title: D.B: Herbivore growth, feeding damage, plant performance

description: The table provides the following information for each of the Silene latifolia individuals in the experiment: distribution range (range; native: eu, invasive: us), population affiliation (corresponds to population IDs in Fig. S1, and Table S2), maternal family of the mother in the first generation crossing (family_mother, a-e), maternal family of the father in the first generation crossing (family_father, a-e), applied breeding treatment (breeding_tmt; outbreeding: o, inbreeding: i), applied herbivory treatment (herbivory_tmt; control: c, herbivory: h), start weight of the Mamestra brassicae larva (start_weight_larva, in mg, NA for control plants), end weight of the Mamestra brassicae larva (end_weight_larva, in mg, NA for control plants), number of days the larva fed on the plant (no_days_fed, NA for control plants), leaf area removed from the plant by the larva (consumed_leaf_area, in mm², NA for control plants), dry weight per mm² leaf (leaf_density, mg/mm², NA for control plants), dry plant biomass consumed by the larva (consumed_biomass, in mg, NA for control plants), number of leaves at the plant age of 100 d (no_leaves_t3, NA for plants that died after the herbivory treatment), leaf length at the plant age of 100 d (leaf_length_t3, in cm, NA for plants that died after the herbivory treatment), leaf width at the plant age of 100 d (leaf_width_t3, in cm, NA for plants that died after the herbivory treatment), presence of side shoots at the plant age of 100 d (binary variable with two columns: buds_yes_t3 and buds_no_t3, NA for plants that died after the herbivory treatment), presence of flowers at the plant age of 100 d (binary variable with two columns: flower_yes_t3 and flower_no_t3, NA for plants that died after the herbivory treatment) and dry aboveground biomass (plant_biomass_t3, in mg, NA for plants that died after the herbivory treatment).
DOI: 10.5061/dryad.2f5v427/4
title: R code for predation analysis for all predators, birds and mammal predators

description: R script for analysis within the manuscript.
DOI: 10.5061/dryad.2f5v427/5
title: Plotting script for graphs

description: R script for producing all figures of significant results within the manuscript.
DOI: 10.5061/dryad.2s8422f/1
title: Processed data for all figures in markdown / CSV format

description: This zip file contains a markdown (.md) file for each figure of our manuscript with all of the data necessary to regenerate that figure. The files are CSV (comma separated value) files with markdown formatting for the headings.
DOI: 10.5061/dryad.2s8422f/2
title: Processed data for all figures in python pickle format

description: This zip file contains a python pickle file that contains all of the data and matplotlib plotting instructions for each figure in our manuscript. For details on how to access the data, see: https://github.com/florisvb/drosophila_co2_attraction/tree/master/data
DOI: 10.5061/dryad.32tm1k4/1
title: S1FigData_PvlkRAFdataset_1 samples Pvl01 to Pvl06

description: This archive contains the vcf files listing all the high quality positions kept to draw the reference allele frequency distribution for samples Pvl01 to Pvl06. Please see the Materials and methods section for a detailed description.
DOI: 10.5061/dryad.32tm1k4/2
title: S1FigData_PvlkRAFdataset_2 samples Pvl07 to Pvl09

description: This archive contains the vcf files listing all the high quality positions kept to draw the reference allele frequency distribution for samples Pvl07 to Pvl09. Please see the Materials and methods section for a detailed description.
DOI: 10.5061/dryad.32tm1k4/3
title: S1FigData_PvlkRAFdataset_3 samples Pvl10 and Pvl11

description: This archive contains the vcf files listing all the high quality positions kept to draw the reference allele frequency distribution for samples Pvl10 and Pvl11. Please see the Materials and methods section for a detailed description.
DOI: 10.5061/dryad.35h13bg/1
title: Metaanalysis for Gingko vs AMS
DOI: 10.5061/dryad.364cf36/1
title: Programs

description: Programs used to generate and analyze data. A brief description of the programs is in the readme.txt.
DOI: 10.5061/dryad.41s0q7t/1
title: Bird vocalizations on four paired green and conventional roofs in New York City.

description: Bird species and vocalizations on four paired green and conventional roofs from April through June (2011 and 2012) in New York City. Sound files were recorded using Acoustic Recording units. Sound files were transformed into spectrogram format using Audacity ® (1.3 Beta), cleaned of background noise, and then vocalizations were identified to species. Bird species are listed by their alpha codes.
DOI: 10.5061/dryad.41s0q7t/2
title: Arthropods collected on green and conventional roofs in New York City.

description: Arthropods collected on four paired green and conventional roofs from April and May through July (2011 and 2012) in New York City.
DOI: 10.5061/dryad.54h75r8/4
title: Experiment 4: Does the sexual attraction of the pollinator increase when the attractant is associated with the labellum?

description: A comparison of pollinator sexual attraction (measured as landing and attempted copulation) to intact flowers vs those where odour production is associated with the labellum.
DOI: 10.5061/dryad.54h75r8/5
title: Experiment 5: Does a dull-coloured labellum enhance the sexual attraction of the pollinator?

description: A comparison of pollinator sexual behaviour (measured as landing and attempted copulation) with flowers that have either a white or a red labellum
DOI: 10.5061/dryad.54h75r8/6
title: Supplement: does the odour of Caledonia longicauda reduce attraction of pollinators to Caledonia pectinata

description: A comparison of pollinator responses to Caladenia pectianta with and without the addition of the odour of Caledonia longicauda
DOI: 10.5061/dryad.57v6627/1
title: Baculum_Landmarks_data

description: TPS file with baculum raw landmarks for each specimen. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet (Morphological_Data)
DOI: 10.5061/dryad.57v6627/2
title: Femur_Landmarks_data

description: TPS file with right hind femur raw landmarks for each specimen. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet (Morphological_Data)
DOI: 10.5061/dryad.57v6627/3
title: Baculum_Reliability_data

description: TPS file with baculum raw landmarks of a subset of the individuals. For the same individual, we have two sets of landmarks.  Used to assess the repeatability of landmark placement. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet
DOI: 10.5061/dryad.57v6627/4
title: Femur_Reliability_data

description: TPS file with right hind femur raw landmarks of a subset of the individuals. For the same individual, we have two sets of landmarks.  Used to assess the repeatability of landmark placement. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet
DOI: 10.5061/dryad.587bb57/21
title: DICOM images termite mound Tp4

description: Raw DICOM image files of CT-scanned termite mound Tp4
DOI: 10.5061/dryad.587bb57/22
title: DICOM images termite mound Tp5

description: Raw DICOM image files of CT-scanned termite mound Tp5
DOI: 10.5061/dryad.587bb57/23
title: DICOM images termite mound Tp6

description: Raw DICOM image files of CT-scanned termite mound Tp6
DOI: 10.5061/dryad.63m17n5/4
title: ReadMe_Scripts
DOI: 10.5061/dryad.63m17n5/5
title: Script_Hankin_et_al_Analysis_Code
DOI: 10.5061/dryad.63m17n5/6
title: Script_Hankin_et_al_Node_to_Age_Tool
DOI: 10.5061/dryad.63m17n5/7
title: Template_NodeData
DOI: 10.5061/dryad.6rc405m/1
title: Alvarado-Serrano et al_I_purpurea_SNPdata

description: Set of filtered SNPs (in vcf format) used.
DOI: 10.5061/dryad.6rc405m/2
title: Alvarado-Serrano et al_I_purpurea_SSRdata

description: SSR dataset (in genalex format) used.
DOI: 10.5061/dryad.6rc405m/3
title: Alvarado-Serrano et al_landscape_variables

description: Ascii files for all 8 natural and anthropogenic variables used in the analyses.
DOI: 10.5061/dryad.817j8pk/1
title: Raw data for PONE-D-18-00902 to PLoS One

description: The file including all the raw data to induce the result of the above article.
DOI: 10.5061/dryad.88s50/10
title: ME_ST_XX_00042

description: Individual ID: Clam 6 (Night) ; Time: 10 March 2017 20:45
DOI: 10.5061/dryad.88s50/2
title: ME_ST_XX_00006

description: Individual ID: Clam 5 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.88s50/3
title: ME_ST_XX_00011

description: Individual ID: Clam 3 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.88s50/4
title: ME_ST_XX_00013

description: Individual ID: Clam 6 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.88s50/5
title: ME_ST_XX_00018

description: Individual ID: Clam 7 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.88s50/6
title: ME_ST_XX_00021

description: Individual ID: Clam 8 (Day) ; Time: 10 March 2017 14:40
DOI: 10.5061/dryad.88s50/7
title: ME_ST_XX_00026

description: Individual ID: Clam 1 (Night) ; Time: 10 March 2017 20:45
DOI: 10.5061/dryad.88s50/8
title: ME_ST_XX_00034

description: Individual ID: Clam 5 (Night) ; Time: 10 March 2017 20:45
DOI: 10.5061/dryad.88s50/9
title: ME_ST_XX_00040

description: Individual ID: Clam 3 (Night) ; Time: 10 March 2017 20:45
DOI: 10.5061/dryad.jt07145/1
title: R-code used to run simulations outlined in the paper

description: See README file
DOI: 10.5061/dryad.jt07145/2
title: R code for figures and data

description: The data used to produce figures in the paper
DOI: 10.5061/dryad.pd33j50/1
title: Nodal flow with 2 rotating cilia

description: Velocity field within the node with two rotating cilia