cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26989168.v1
title: Additional file 4 of Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

description: Additional file 4: Dataset S3. Sheet1: The metabolic characteristics of the major fungal groups annotated against KEGG; Sheet2: Detail information of the carbohydrate-active enzyme family (CAZymes) detected in major fungal groups; Abbreviations: GH, glycosidases or glycosyl hydrolases; PL, polysaccharide lyases; CE, carbohydrate esterases; GT, glycosyltransferases; AA, auxiliary activities; CBM, carbohydrate binding modules; Sheet3: Detail information of the peptidase family genes detected in major fungal groups; Abbreviations: Aspartic (A), Cysteine (C), Metallo (M), Mixed (P), Serine (S) and Threonine (T).
DOI: 10.6084/m9.figshare.26989171
title: Additional file 5 of Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

description: Additional file 5: Dataset S4. Sheet1: Detail information for MAGs belong to Candidatus Cosmopoliota; Sheet2: The metabolic characteristics of Ca. Cosmopoliota, annotated against KEGG database; Sheet3: Detail information of CAZymes encoded in Ca. Cosmopoliota; Abbreviations: GH, glycosidases or glycosyl hydrolases; PL, polysaccharide lyases; CE, carbohydrate esterases; GT, glycosyltransferases; AA, auxiliary activities; CBM, carbohydrate binding modules; Sheet4: Detail information of peptidase encoded in Ca. Cosmopoliota; Abbreviations: Aspartic (A), Cysteine (C), Metallo (M), Mixed (P), Serine (S) and Threonine (T); Sheet5: Gene functions of each MAG annotated by metabolic software; Sheet6: Information of sequences belonging to Ca. Cosmopoliota (identity &gt; 83%) retrieved from GenBank; Sheet7: SRA samples with sequences belonging to Ca. Cosmopoliota (identity &gt; 83%) retrieved from Microbe Atlas Project by MAPseq.
DOI: 10.6084/m9.figshare.26989171.v1
title: Additional file 5 of Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

description: Additional file 5: Dataset S4. Sheet1: Detail information for MAGs belong to Candidatus Cosmopoliota; Sheet2: The metabolic characteristics of Ca. Cosmopoliota, annotated against KEGG database; Sheet3: Detail information of CAZymes encoded in Ca. Cosmopoliota; Abbreviations: GH, glycosidases or glycosyl hydrolases; PL, polysaccharide lyases; CE, carbohydrate esterases; GT, glycosyltransferases; AA, auxiliary activities; CBM, carbohydrate binding modules; Sheet4: Detail information of peptidase encoded in Ca. Cosmopoliota; Abbreviations: Aspartic (A), Cysteine (C), Metallo (M), Mixed (P), Serine (S) and Threonine (T); Sheet5: Gene functions of each MAG annotated by metabolic software; Sheet6: Information of sequences belonging to Ca. Cosmopoliota (identity &gt; 83%) retrieved from GenBank; Sheet7: SRA samples with sequences belonging to Ca. Cosmopoliota (identity &gt; 83%) retrieved from Microbe Atlas Project by MAPseq.
DOI: 10.6084/m9.figshare.26989183
title: Additional file 2 of Repetitive and compulsive behavior after Early-Life-Pain associated with reduced long-chain sphingolipid species

description: Additional file 2. Normalized RNAseq reads of candidate genes
DOI: 10.6084/m9.figshare.26989183.v1
title: Additional file 2 of Repetitive and compulsive behavior after Early-Life-Pain associated with reduced long-chain sphingolipid species

description: Additional file 2. Normalized RNAseq reads of candidate genes
DOI: 10.6084/m9.figshare.26989186
title: Additional file 3 of Repetitive and compulsive behavior after Early-Life-Pain associated with reduced long-chain sphingolipid species

description: Additional file 3. Supplementary statistical analyses of IntelliCage behavior
DOI: 10.6084/m9.figshare.26989186.v1
title: Additional file 3 of Repetitive and compulsive behavior after Early-Life-Pain associated with reduced long-chain sphingolipid species

description: Additional file 3. Supplementary statistical analyses of IntelliCage behavior
DOI: 10.15468/dl.xkk54r
title: Occurrence Download

description: A dataset containing 927 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrophyllum macrophyllum (Schinz, 1821)"
 ]
}

 The dataset includes 927 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011668-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.2645644
title: (06)-He2019A-DS0001 – Tribolium castaneum foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (06)-He2019A-DS0001 – Tribolium castaneum foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5519/qd.10hres1x
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (127 records)
DOI: 10.6084/m9.figshare.26989306
title: Additional file 39 of Non-canonical two-step biosynthesis of anti-oomycete indole alkaloids in Kickxellales

description: Additional file 39: Table S8. BlastP analysis of LinA-like proteins in species of various kingdoms of life.
DOI: 10.6084/m9.figshare.26989306.v1
title: Additional file 39 of Non-canonical two-step biosynthesis of anti-oomycete indole alkaloids in Kickxellales

description: Additional file 39: Table S8. BlastP analysis of LinA-like proteins in species of various kingdoms of life.
DOI: 10.6084/m9.figshare.26989309.v1
title: Additional file 40 of Non-canonical two-step biosynthesis of anti-oomycete indole alkaloids in Kickxellales

description: Additional file 40: Table S9. BlastP analysis of LinB-like proteins in species of various kingdoms of life.
DOI: 10.6084/m9.figshare.26989309
title: Additional file 40 of Non-canonical two-step biosynthesis of anti-oomycete indole alkaloids in Kickxellales

description: Additional file 40: Table S9. BlastP analysis of LinB-like proteins in species of various kingdoms of life.
DOI: 10.6084/m9.figshare.26988577
title: Guo <i>et al.</i> 2024

description: Microbial communities adapted to local litter may accelerate ‘home’ leaf litter decomposition rates, a phenomenon known as home-field advantage (HFA). However, we do not yet fully understand HFA, as its strength is highly variable and depends on environmental conditions.
DOI: 10.15468/dl.yfzh5z
title: Occurrence Download

description: A dataset containing 12503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.37767 47.6332,4.47112 47.6332,4.47112 47.70339,4.37767 47.70339,4.37767 47.6332))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12503 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011669-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26989375
title: Additional file 2 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 2. Table S2. Annotation results of non-redundant queries of antibiotic resistance genes (ARG) generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six samples, while that preceded by S or R refers to a unique ORF.
DOI: 10.6084/m9.figshare.26989378.v1
title: Additional file 3 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 3. Table S3. Number and description of non-redundant queries of antibiotic resistance genes (ARG) generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six samples, while that preceded by S or R refers to a unique ORF. ARGs with query no. of ≤ 15 (in red) were not analyzed further.
DOI: 10.6084/m9.figshare.26989372
title: Additional file 1 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 1. Table S1. Alignment results of non-redundant gene queries generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six microbiome samples, while that preceded by S or R refers to a unique ORF.
DOI: 10.6084/m9.figshare.26989372.v1
title: Additional file 1 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 1. Table S1. Alignment results of non-redundant gene queries generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six microbiome samples, while that preceded by S or R refers to a unique ORF.
DOI: 10.6084/m9.figshare.26989375.v1
title: Additional file 2 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 2. Table S2. Annotation results of non-redundant queries of antibiotic resistance genes (ARG) generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six samples, while that preceded by S or R refers to a unique ORF.
DOI: 10.6084/m9.figshare.26989378
title: Additional file 3 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 3. Table S3. Number and description of non-redundant queries of antibiotic resistance genes (ARG) generated from rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. NOVO_MIX refers to reassembled low-copy ORF that is usually found in ≥ 2 of the six samples, while that preceded by S or R refers to a unique ORF. ARGs with query no. of ≤ 15 (in red) were not analyzed further.
DOI: 10.6084/m9.figshare.26989381
title: Additional file 4 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 4. Table S4. Pathogens or bacterial colonizers harboring antibiotic resistance genes (ARGs) that are prevalent in human. The data were generated using the resistance gene identifier (RGI) that is a tool for putative AMR gene detection from submitted sequence annotation data in the comprehensive antibiotic resistance database (CARD). Species in red refers to a microbe acting as a biocontrol agent and later was placed into the low risk group 1 (classification according to Technical Rules for Biological Agents (TRBA) from the German Federal Institute for Occupational Safety and Health, TRBA 466 “Classification of prokaryotes (bacteria and archaea) into risk groups”) as cited by Nelkner et al. (2019).
DOI: 10.6084/m9.figshare.26989381.v1
title: Additional file 4 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 4. Table S4. Pathogens or bacterial colonizers harboring antibiotic resistance genes (ARGs) that are prevalent in human. The data were generated using the resistance gene identifier (RGI) that is a tool for putative AMR gene detection from submitted sequence annotation data in the comprehensive antibiotic resistance database (CARD). Species in red refers to a microbe acting as a biocontrol agent and later was placed into the low risk group 1 (classification according to Technical Rules for Biological Agents (TRBA) from the German Federal Institute for Occupational Safety and Health, TRBA 466 “Classification of prokaryotes (bacteria and archaea) into risk groups”) as cited by Nelkner et al. (2019).
DOI: 10.6084/m9.figshare.26989384
title: Additional file 5 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 5. Table S5. List of antibiotic resistance genes (ARG) with query number of ≥ 16 harbored by known human microbial pathogens/colonizers that were detected in soil microbiomes of Abutilon fruticosum. N/A refers to ARGs that are not prevalent in known human bacterial pathogens/colonizers. These ARGs were not analyzed further as the risk of their direct transfer to human bacterial pathogens/colonizers is low. Species in blue are not in the list of human pathogens/colonizers, while that in red refers to a microbe acting as a biocontrol agent as described (Nelkner et al. 2019).
DOI: 10.6084/m9.figshare.26989384.v1
title: Additional file 5 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 5. Table S5. List of antibiotic resistance genes (ARG) with query number of ≥ 16 harbored by known human microbial pathogens/colonizers that were detected in soil microbiomes of Abutilon fruticosum. N/A refers to ARGs that are not prevalent in known human bacterial pathogens/colonizers. These ARGs were not analyzed further as the risk of their direct transfer to human bacterial pathogens/colonizers is low. Species in blue are not in the list of human pathogens/colonizers, while that in red refers to a microbe acting as a biocontrol agent as described (Nelkner et al. 2019).
DOI: 10.6084/m9.figshare.26989387
title: Additional file 6 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 6. Table S6. Query number of non-redundant antibiotic resistance genes (ARGs) of the different antimicrobial resistance mechanisms (AMR) at the phylum level of soil microbiomes of Abutilon fruticosum. Rows in red refer to less abundant mechanisms that were not analyzed further.
DOI: 10.6084/m9.figshare.26989387.v1
title: Additional file 6 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 6. Table S6. Query number of non-redundant antibiotic resistance genes (ARGs) of the different antimicrobial resistance mechanisms (AMR) at the phylum level of soil microbiomes of Abutilon fruticosum. Rows in red refer to less abundant mechanisms that were not analyzed further.
DOI: 10.6084/m9.figshare.26989390
title: Additional file 7 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 7. Table S7. Abundance of non-redundant gene queries at bacterial genus/species level of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum.
DOI: 10.6084/m9.figshare.26989390.v1
title: Additional file 7 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 7. Table S7. Abundance of non-redundant gene queries at bacterial genus/species level of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum.
DOI: 10.6084/m9.figshare.26989393
title: Additional file 8 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 8. Table S8. Abundance of Mycobacterium genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989393.v1
title: Additional file 8 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 8. Table S8. Abundance of Mycobacterium genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989396
title: Additional file 9 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 9. Table S9. Abundance of Vibrio genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989396.v1
title: Additional file 9 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 9. Table S9. Abundance of Vibrio genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989399
title: Additional file 10 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 10. Table S10. Abundance of Klebsiella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989399.v1
title: Additional file 10 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 10. Table S10. Abundance of Klebsiella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989402
title: Additional file 11 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 11. Table S11. Abundance of Stenotrophomonas genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989402.v1
title: Additional file 11 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 11. Table S11. Abundance of Stenotrophomonas genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989405
title: Additional file 12 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 12. Table S12. Abundance of Pseudomonas genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989405.v1
title: Additional file 12 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 12. Table S12. Abundance of Pseudomonas genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989408
title: Additional file 13 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 13. Table S13. Abundance of Nocardia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989408.v1
title: Additional file 13 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 13. Table S13. Abundance of Nocardia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989411
title: Additional file 14 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 14. Table S14. Abundance of Salmonella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989411.v1
title: Additional file 14 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 14. Table S14. Abundance of Salmonella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989414
title: Additional file 15 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 15. Table S15. Abundance of Escherichia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989414.v1
title: Additional file 15 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 15. Table S15. Abundance of Escherichia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989417
title: Additional file 16 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 16. Table S16. Abundance of Citrobacter genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989417.v1
title: Additional file 16 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 16. Table S16. Abundance of Citrobacter genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.