cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/d67f76feaaff1767571b97b640f622dd
title: ESM01 Fire and grazing modulate the structure and resistance of plant-floral visitor networks in a tallgrass prairie

description: Data from the study: Welti, E.A.R. and Joern, A. 2017. Fire and Grazing modulate the structure and resistance of plant-floral visitor networks in a tallgrass prairie. Oecologia 186: 447-458. EMS011 dataset contains counts of blooming inflorescences of plant species on 12 Konza watersheds in June-July of 2014; ESM012 dataset contains associations between flower-visiting insects and insect-pollinated flowering plants on 12 Konza watersheds collected in May-July of 2014; ESM013 dataset describes insects belonging to the orders of Coleoptera, Diptera, Lepidoptera and Hymenoptera collected in pantrap transects on 12 Konza watersheds collected in June - July of 2014.
DOI: 10.7910/dvn/w0k9bf/eh4hcf
title: climate_change_servey_ar_2017_03_19_AN 3 May - Anonymized.xlsx

description: :unav
DOI: 10.7910/dvn/ecfs7n/lht7qg
title: Health management practices_Raw data (Answer only) - Anonymized.tab

description: :unav
DOI: 10.7910/dvn/ynvjxv/wvdrcl
title: Data of Fish processing in Aswan - Anonymized.xlsx

description: :unav
DOI: 10.25345/c5467g
title: MassIVE MSV000084506 - Exoprotoemics of pseudomonas putida KT2440 outer membrane vesicles (OMV) and vesicle-free secretome (VSF)
title: Lignin is an abundant and recalcitrant component of plant cell walls. While lignin degradation in Nature is typically attributed to fungi, growing evidence suggests that bacteria can also modify this complex biopolymer. However, the spatiotemporal mechanisms for this modification remain unclear. Improved understanding of this biological and extracellular process would aid in our collective knowledge of both carbon cycling and advanced microbial strategies to valorize lignin. In this data set, we examined the exoproteome of Pseudomonas putida KT2440 grown with on lignin-rich media to characterize the secretion of abundant outer membrane vesicles (OMVs). Proteomic analysis revealed that the exoproteome is 20% more sub-compartmentalized into OMVs and OMV protein cargo are 52% more dynamic in lignin-rich media as compared to lignin-free media.
DOI: 10.5281/zenodo.3519334
title: Figures, plotting scripts, and data for "A fast, low-cost, and stable memory algorithm for implementing multicomponent transport in direct numerical simulations"

description: This dataset contains the figures, as well as the necessary plotting scripts and data to reproduce them, for the article "A fast, low-cost, and stable memory algorithm for implementing multicomponent transport in direct numerical simulations" by Aaron J. Fillo, Jason Schlup, Guillaume Beardsell, Guillaume Blanquart, and Kyle E. Niemeyer (2019). In addition, the code used to generate the eigenvalues in Table 1 is included. The scripts were run in Matlab 2019a, though none of the versions used should be version-dependent. Furthermore, non-standard functions are included with dependencies hard-coded. We used export_fig (https://github.com/altmany/export_fig) to generate high-quality figures, and redistribute the version used here for reproducibility (export_fig was developed by Oliver J. Woodford and Yair M. Altman, and made available openly under the BSD 3-Clause License). The code included in this dataset is released under the BSD 3-Clause License (see LICENSE.txt for details), other than the source of export_fig, as described. The figures are shared under the Creative Commons Attribution 4.0 International License (CC BY 4.0, https://creativecommons.org/licenses/by/4.0/).
description: This material is based upon work supported by the National Science Foundation under Grant No. 1314109-DGE. This research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility operated under Contract No. DE-AC02-05CH11231.
DOI: 10.7910/dvn/5ktv2q/iiubcn
title: PCRSPF analysis_HQ_V1 October Revised 2017 - Anonymized.tab

description: :unav
DOI: 10.7910/dvn/covgmo/xd8vy2
title: CPUE Data - original - Anonymized.tab

description: :unav
DOI: 10.7910/dvn/tb1mgy/pgwhzk
title: all subject metrics for repository.tab

description: :unav
DOI: 10.7910/dvn/9q79ge/bmqwd2
title: Zhuang_judgmentreasons_attributes.tab

description: coding of written reasons by one of the authors (Zhuang Liu)
DOI: 10.7910/dvn/9q79ge/d7jhwr
title: participations_2016-04-18T12-59-10 00-00.tab

description: main experimental data (raw csv provided only for verification purposes, not suitable for ingestion into Stata -- use converted Judges_participation.xlsx instead)
DOI: 10.7910/dvn/9q79ge/dqbozt
title: document_requests_2016-04-18T12-59-12 00-00.tab

description: ancillary experimental data (document clicks -- used for table 2 and associated tests)
DOI: 10.7910/dvn/9q79ge/xzivln
title: Judges_participations.xlsx

description: main experimental data (Excel conversion of participations....csv)
DOI: 10.7910/dvn/9q79ge/zjhzt8
title: analysis.do

description: script performing all data preparation and analysis
DOI: 10.5281/zenodo.3519394
title: andrewbaxter439/teen-preg-project: Pre-submission code

description: Bringing project to point of producing graphs for publication; team reviews of methods.
DOI: 10.5281/zenodo.3519356
title: Impact Degassing of H2 on Early Mars and Its Effect on the Climate System

description: Supporting information contains IDL saveset files to reproduce figures, and IDL source code to run the model, and an excel spreadsheet of crater statistics.
DOI: 10.5281/zenodo.3519357
title: Impact Degassing of H2 on Early Mars and Its Effect on the Climate System

description: Supporting information contains IDL saveset files to reproduce figures, and IDL source code to run the model, and an excel spreadsheet of crater statistics.
DOI: 10.7910/dvn/ymdcfe/hqpkgt
title: Qasr Shemamok Terrain 20190113.pdf

description: 1:2,500 scale map (A0 size) of the Qasr Shemamok DSM (PDF)
DOI: 10.7910/dvn/ymdcfe/kkx5tz
title: Site_002_Qasr_Shemamok_20190113_DSM.zip

description: Digital Surface Model (DSM) of Qasr Shemamok (3 cm spatial resolution) in TIF format. UTM Zone 38 north projection.
DOI: 10.5281/zenodo.3519172
title: Anthropogenic pressures drive population genetic structuring across a Critically Endangered lemur species range

description: Includes initial input landscape surfaces (.acs) and final resistance surfaces (.out) generated during the current study.
DOI: 10.5281/zenodo.3519173
title: Anthropogenic pressures drive population genetic structuring across a Critically Endangered lemur species range

description: Includes initial input landscape surfaces (.acs) and final resistance surfaces (.out) generated during the current study.
DOI: 10.21227/6amt-f814
title: Breathing data from a piezoresistive breathing sensor

description: A new wearable sensing system of respiration rate based on a piezoresistive FlexiForce sensor has been developed. The 3D casing of the system has been designed and printed with a 3D printer. The design of the casing has a direct impact on sensor accuracy. The casing was designed to house all elements of the sensing system in a compact way: microcontroller, battery, conditioning circuit, Bluetooth module and battery charger. The sensing system was validated with twenty-one subjects using a metronome as a reference. The sensor was worn in the chest at the level of the diaphragm through a chest strap. Six different values of breaths per minute (BPM) were assessed: 10, 12.5, 15, 17.5, 20 and 22.5 BPM. Subjects were requested to perform one full minute of breathing for each reference value at the rhythm of the metronome, for five different activities (sitting, sitting and moving, standing, standing and moving, and walking). This dataset includes the raw voltage signals recorded during the validation experiments (ADC readings expressed on bits). It is organized in twenty-one folders (1 per subject). Each folder contains thirty different text files (six reference values for each of the five positions). In total, this dataset comprises 630 files of breathing signals.
DOI: 10.5281/zenodo.3346592
title: Mind the gap: The location of the lower edge of the pair instability supernovae black hole mass gap

description: Inlists and run_star_extras.f90 used for the paper: "Mind the gap: The location of the pair instability supernovae black hole mass gap" datafile1.txt contains a machine readable table for all parameters varied in the paper. This work was done with MESA version 11123 and with the MESASDK version 20180822.
DOI: 10.5281/zenodo.3346593
title: Mind the gap: The location of the lower edge of the pair instability supernovae black hole mass gap

description: Inlists and run_star_extras.f90 used for the paper: "Mind the gap: The location of the pair instability supernovae black hole mass gap" datafile1.txt contains a machine readable table for all parameters varied in the paper. This work was done with MESA version 11123 and with the MESASDK version 20180822.
DOI: 10.17632/bknmsy77pb.1
title: Data for: Indentation size and loading rate sensitivities on mechanical properties and creep behavior of solid bitumen

description: File 1 is the data for the dependences of modulus and hardness on depth shown in Figure 6. File 2 is the data for creep time-depth of selected tests with a depth of 3000 nm. File 3 is the data for tests with a loading rate of 0.05s-1. File 4 is the data for m calculation shown in Figure 12. File 5 is the XRD data for solid bitumen shown in Figure 4.
DOI: 10.7910/dvn/bhkszr/omb2uo
title: 2. reanalysis.do

description: :unav
DOI: 10.7910/dvn/bhkszr/sk309x
title: Pew_Models.tab

description: :unav
DOI: 10.7910/dvn/bhkszr/u6eaag
title: 5. ANES analysis.do

description: :unav
DOI: 10.7910/dvn/bhkszr/vib6sg
title: anesTimeSeriesDataSubset.tab

description: :unav
DOI: 10.7910/dvn/bhkszr/b4ugqi
title: 1. Two stage RR simulations.R

description: :unav
DOI: 10.7910/dvn/bhkszr/c0agli
title: 3. Power simulations.do

description: :unav
DOI: 10.7910/dvn/bhkszr/kcbeva
title: 4. False positive simulations.do

description: :unav
DOI: 10.7910/dvn/bhkszr/vhpyhe
title: readme.txt

description: :unav
DOI: 10.17632/5bhjnjt4j4.1
title: Data for: Nucleus targeting anthraquinone-based copper (II) complexes as the potent PDT agents: Synthesis, photo-physical and theoretical evaluation

description: Spectroscopic data, biological data
DOI: 10.18112/openneuro.ds002006.v1.0.1
title: Memory and decision making dataset
DOI: 10.7910/dvn/hg3myw/0t6gfb
title: README.txt

description: :unav
DOI: 10.7910/dvn/hg3myw/fxhfbo
title: ALS Survey Questions D7 patient_FINAL.pdf

description: Full survey that was administered online to patients
DOI: 10.7910/dvn/hg3myw/gsfhjh
title: IMPACT ALS Survey_Raw Data.xlsx

description: Raw data file
DOI: 10.7910/dvn/hg3myw/k44yz6
title: ALS Survey Questions D7 caregiver_FINAL.pdf

description: Questions that were administered to caregivers
DOI: 10.17632/bknmsy77pb.2
title: Data for: Indentation size and loading rate sensitivities on mechanical properties and creep behavior of solid bitumen

description: File 1 is the data for the dependences of modulus and hardness on depth shown in Figure 6. File 2 is the data for creep time-depth of selected tests with a depth of 3000 nm. File 3 is the data for tests with a loading rate of 0.05s-1. File 4 is the data for m calculation shown in Figure 12. File 5 is the XRD data for solid bitumen shown in Figure 4.
DOI: 10.17632/mvdr9fprb4.1
title: Data for: Shape and size transformations of biomass particles during combustion

description: Combustion of biomass particles in a wire mesh single particle combustion setup at the University of Edinburgh, recorded with high speed camera
DOI: 10.25345/c50d45
title: MassIVE MSV000084507 - Bombardier mediates delivery of short-form Bomanins in the Drosophila Toll response
title: Toll mediates a robust and effective innate immune response across vertebrates and invertebrates. In Drosophila melanogaster, activation of Toll by systemic infection drives the accumulation of a rich repertoire of immune effectors in hemolymph, including the recently characterized Bomanins as well as the classical antimicrobial peptides (AMPs). Here we report the functional characterization of a Toll-induced hemolymph protein encoded by the bombardier (CG18067) gene. Using the CRISPR-Cas9 system to generate a precise deletion, we found that Bombardier is required for Toll-mediated defense against fungi and Gram-positive bacteria. Assaying cell-free hemolymph from these flies, we found that the Bomanin-dependent candidacidal activity observed in hemolymph is also dependent on Bombardier, but not on the antifungal AMPs Drosomycin and Metchnikowin. Using mass spectrometry, we demonstrated that deletion of Bombardier results in the specific absence of short-form Bomanins from hemolymph. Flies lacking Bombardier also exhibited a defect in pathogen tolerance that we trace to an autoimmune disorder triggered by Toll activation. These results lead us to a model in which the presence of Bombardier in wild-type flies enables the proper folding, secretion, or intermolecular associations of short-form Bomanins, and the absence of Bombardier disrupts one or more of these steps, resulting in defects in both immune resistance and tolerance.
DOI: 10.17632/t8g6nyvd6d.1
title: Data for: Bulk microanalysis of assemblages of small fluid inclusions by LA-ICP-MS: Methodology and application to orogenic gold systems

description: Table A1: Raw data for laser ablation profiles. Table A2: Laser ablation profiles converted to time-slice domain data (collection period for gas blank removed). All concentrations given in ppm, but note that these are semi-quantitative values in lack of an internal Na standard, and only element ratios should be used for research purposes. Matrix correction was not performed before conversion.
DOI: 10.25345/c5vq28
title: MassIVE MSV000084508 - Bombardier mediates delivery of short-form Bomanins in the Drosophila Toll response
title: Toll mediates a robust and effective innate immune response across vertebrates and invertebrates. In Drosophila melanogaster, activation of Toll by systemic infection drives the accumulation of a rich repertoire of immune effectors in hemolymph, including the recently characterized Bomanins as well as the classical antimicrobial peptides (AMPs). Here we report the functional characterization of a Toll-induced hemolymph protein encoded by the bombardier (CG18067) gene. Using the CRISPR-Cas9 system to generate a precise deletion, we found that Bombardier is required for Toll-mediated defense against fungi and Gram-positive bacteria. Assaying cell-free hemolymph from these flies, we found that the Bomanin-dependent candidacidal activity observed in hemolymph is also dependent on Bombardier, but not on the antifungal AMPs Drosomycin and Metchnikowin. Using mass spectrometry, we demonstrated that deletion of Bombardier results in the specific absence of short-form Bomanins from hemolymph. Flies lacking Bombardier also exhibited a defect in pathogen tolerance that we trace to an autoimmune disorder triggered by Toll activation. These results lead us to a model in which the presence of Bombardier in wild-type flies enables the proper folding, secretion, or intermolecular associations of short-form Bomanins, and the absence of Bombardier disrupts one or more of these steps, resulting in defects in both immune resistance and tolerance.
DOI: 10.17632/48frv47b3d.1
title: Data for: A multi-proxy µ-XRF inferred lake sediment record of environmental change spanning the last ca. 2230 years from Lake Kanono, Northland, New Zealand

description: Annually resolved micro-XRF data with a 5 point moving average applied from Lake Kanono, Northland, New Zealand. Annual rainfall, mean wind speed (MWS), and number of days with gusts &gt;33 knots for Northland region of New Zealand.
DOI: 10.5281/zenodo.3519324
title: Dataset for image analysis of LCDV susceptibility in sea bream

description: This dataset comprises the photographs used to carry out the genetic estimates of LCDV susceptibility in sea bream. The numbers 1-499 correspond to batch1 and 500-100 to batch2
DOI: 10.5281/zenodo.3519325
title: Dataset for image analysis of LCDV susceptibility in sea bream

description: This dataset comprises the photographs used to carry out the genetic estimates of LCDV susceptibility in sea bream. The numbers 1-499 correspond to batch1 and 500-100 to batch2
DOI: 10.5281/zenodo.3519430
title: Data for "Probing proximity induced superconductivity in InAs nanowire using built-in barriers"

description: Data for "Probing proximity induced superconductivity in InAs nanowire using built-in barriers"
DOI: 10.5281/zenodo.3518707
title: DCTR: Pythia e+e- -&gt; Z -&gt; dijets datasets

description: A collection of datasets used in Neural Networks for Full Phase-space Reweighting and Parameter Tuning. Sample code for reproducing the results is available on GitHub. Each dataset was generated with the Pythia 8.230 event generator. Particle-level \(e^+ e^- \to Z \to \text{dijet}\) events with about 100 particles in each event are clustered into jets using the anti-kt clustering algorithm (R = 0.8) with Fastjet 3.0.3. Every jet is presented as a list of constituents \((p_T, \eta, \phi, \text{particle ID}, \theta)\) where \(\theta = (\texttt{TimeShower:alphaSvalue}, \texttt{StringZ:aLund }, \texttt{StringFlav:probStoUD})\). <strong>Training Datasets:</strong><br> Each training file contains two arrays, X and Y.<br> X is an array of jets and Y is 0 (1) if the jet was generated with default (non-default) Pythia parameters. For a non-default jet (Y=1), the \(\theta\) in each constituent represents the value of the Pythia parameter that was used. Note that for a default jet (Y=0) the \(\theta\) in each constituent is <strong>not</strong> the default Pythia parameters, but \(\theta\) uniformly sampled in the same range as the Y=1 jets. The parameters were uniformly sampled in \(\texttt{TimeShower:alphaSvalue} \in [0.10, 0.18]\) \(\texttt{StringZ:aLund } \in [0.50, 0.90]\) \(\texttt{StringFlav:probStoUD } \in [0.10, 0.30]\) The 1D datasets are labeled by which parameter was changed, and the 3D dataset simultaneously vary all three parameters. <strong>Test Datasets:</strong><br> Each test dataset consists of an dictionary containing: 'jet': the jet constituents 'multiplicity': Number of particles in jet 'tau21': Nsubjettiness observable 'tau32': Nsubjettiness observable 'ECF_N3_B4': Energy Correlation Function(N=3, \(\beta\)=4) 'ECF_N4_B4': Energy Correlation Function(N=4, \(\beta\)=4) The corresponding \(\theta\) values for each test set are described in the paper.
DOI: 10.5281/zenodo.3518708
title: DCTR: Pythia e+e- -&gt; Z -&gt; dijets datasets

description: A collection of datasets used in Neural Networks for Full Phase-space Reweighting and Parameter Tuning. Sample code for reproducing the results is available on GitHub. Each dataset was generated with the Pythia 8.230 event generator. Particle-level \(e^+ e^- \to Z \to \text{dijet}\) events with about 100 particles in each event are clustered into jets using the anti-kt clustering algorithm (R = 0.8) with Fastjet 3.0.3. Every jet is presented as a list of constituents \((p_T, \eta, \phi, \text{particle ID}, \theta)\) where \(\theta = (\texttt{TimeShower:alphaSvalue}, \texttt{StringZ:aLund }, \texttt{StringFlav:probStoUD})\). <strong>Training Datasets:</strong><br> Each training file contains two arrays, X and Y.<br> X is an array of jets and Y is 0 (1) if the jet was generated with default (non-default) Pythia parameters. For a non-default jet (Y=1), the \(\theta\) in each constituent represents the value of the Pythia parameter that was used. Note that for a default jet (Y=0) the \(\theta\) in each constituent is <strong>not</strong> the default Pythia parameters, but \(\theta\) uniformly sampled in the same range as the Y=1 jets. The parameters were uniformly sampled in \(\texttt{TimeShower:alphaSvalue} \in [0.10, 0.18]\) \(\texttt{StringZ:aLund } \in [0.50, 0.90]\) \(\texttt{StringFlav:probStoUD } \in [0.10, 0.30]\) The 1D datasets are labeled by which parameter was changed, and the 3D dataset simultaneously vary all three parameters. <strong>Test Datasets:</strong><br> Each test dataset consists of an dictionary containing: 'jet': the jet constituents 'multiplicity': Number of particles in jet 'tau21': Nsubjettiness observable 'tau32': Nsubjettiness observable 'ECF_N3_B4': Energy Correlation Function(N=3, \(\beta\)=4) 'ECF_N4_B4': Energy Correlation Function(N=4, \(\beta\)=4) The corresponding \(\theta\) values for each test set are described in the paper.
DOI: 10.5281/zenodo.3519429
title: Data for "Probing proximity induced superconductivity in InAs nanowire using built-in barriers"

description: Data for "Probing proximity induced superconductivity in InAs nanowire using built-in barriers"
DOI: 10.17632/d9grncpn98.1
title: Data for: Variable fault tip propagation rates affected by near-surface lithology and implications for fault displacement hazard assessment.

description: We here provide the results of three inverse grid search for a fault-propgation fold restoration, using a trishear kinematic modeling. The case study is a shallow break-through fault-propgation fold cutting through a thick sequence of Neogene fluvial and aeolian deposits. The fault is belonging to the external fronts of the Italian Southern Alps (N Italy). We used the code after Allmendinger (1998) (i.e., Fault-Fold code) and we here provide the tested combinations of the six variables of trishear kinematics (see Allmendinger 1998 for futher explanations). We chose the best fit solution based on chi square fitting results, reported in the table for each tested combination of variables. Please, refr to the associated paper for results discussion.
DOI: 10.21227/602a-2z83
title: UNS Hoverflies Classification Dataset

description: Dataset was created as part of joint efforts of two research groups from the University of Novi Sad, which were aimed towards development of vision based systems for automatic identification of insect species (in particular hoverflies) based on characteristic venation patterns in the images of the insects' wings.The set of wing images consists of high-resolution microscopic wing images of several hoverfly species. There is a total of 868 wing images of eleven selected hoverfly species from two different genera, Chrysotoxum and Melanostoma. Besides images of the whole wings "UNS_Hoverflies" dataset also consists of small image patches (64x64 pixels) corresponding to 18 predetermined landmark points in each wing, which were systematically collected from the preprocessed wing images and organized inside the second root folder named "Training - test set".Each wing specimen was uniquely numbered and associated with the corresponding taxonomy group.