cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14932206.v1
title: Electron microscopy (SBF-SEM and TEM) files and TrakEM2 project file for "Neuropeptide repertoire and 3D anatomy of the ctenophore nervous system"

description: Ctenophores are gelatinous marine animals famous for locomotion by ciliary combs. Due to the uncertainties of the phylogenetic placement of ctenophores and the absence of some key bilaterian neuronal genes, it has been hypothesized that their neurons evolved independently. Additionally, recent whole body single cell RNA sequencing (scRNAseq) analysis failed to identify ctenophore neurons using any of the known neuronal molecular markers. To reveal the molecular machinery of ctenophore neurons we have characterized the neuropeptide repertoire of the ctenophore <i>Mnemiopsis leidyi</i>. Using the machine learning NeuroPID tool we predicted 129 new putative neuropeptide precursors. Sixteen of them were localised to the subepithelial nerve net (SNN), sensory aboral organ (AO) and epithelial sensory cells (ESC) providing evidence that they are neuropeptide precursors. Four of these putative neuropeptides had a behavioral effect and increased the animals’ swimming velocity. Intriguingly, these putative neuropeptides finally allowed us to identify neuronal cell types in single cell transcriptomic data and reveal the molecular identity of ctenophore neurons. High resolution electron microscopy and 3D reconstructions of the nerve net underlying the comb plates confirmed a more than 100-year-old hypothesis of anastomoses between neurites of the same cell in ctenophores and revealed that they occur through a continuous membrane. Our work demonstrates the unique ultrastructure of the peptidergic nerve net and a rich neuropeptide repertoire of ctenophores supporting the hypothesis that the first nervous system(s) evolved as nets of peptidergic cells.
DOI: 10.6084/m9.figshare.25764573.v4
title: H<sub>2</sub>O<sub>2</sub><sub> </sub>induced neonatal rats cardiac fibroblasts senescenceO<sub>2</sub>诱导新生大鼠 心脏成纤维细胞 衰老

description: To study the genetic changes in cardiac fibroblasts after aging, we isolated cardiac fibroblasts from neonatal rats and tested them for genetic changes with H<sub>2</sub>O<sub>2 </sub>for 48h. The control group was not treated.
DOI: 10.6084/m9.figshare.13246925.v1
title: Combined abnormal muscle activity and pain-related factors affect disability in patients with chronic low back pain: An association rule analysis

description: In patients with chronic low back pain (CLBP), reduced lumbar flexion-relaxation and reduced variability of muscle activity distribution are reported as abnormal muscle activity. It is not known how abnormal muscle activity and pain-related factors are related to CLBP-based disability. Here, we performed an association rule analysis to investigated how CLBP disability, muscle activity, and pain-related factors in CLBP patients are related. <br>This data set is all variables values and categorized "Low" or "High" for association rules analysis.
DOI: 10.6084/m9.figshare.20016302.v1
title: Manuscript "Engineering the Thin Film Characteristics for Optimal Performance of Superconducting Kinetic Inductance Amplifiers using a Rigorous Modelling Technique" - Dataset for Figure 11

description: Dataset for Figure 11 of ORE manuscript "Engineering the Thin Film Characteristics for Optimal Performance of Superconducting Kinetic Inductance Amplifiers using a Rigorous Modelling Technique"
DOI: 10.6084/m9.figshare.27274026.v2
title: <b>Comprehensive ultrasound images and serum biochemical indicators for biliary atresia and other pediatric cholestatic diseases</b>

description: The dataset consisted of 2,759 ultrasound images obtained from 1,019 infants diagnosed with cholestatic diseases. This included 377 biliary atresia cases (664 fasting and 328 post-prandial images) and 642 non-BA cases (1,004 fasting and 580 post-prandial images). Additionally, there were 183 images documenting abnormal ultrasonographic findings such as triangular cord sign, dilated hepatic artery, and hilar hepatic cysts. Serum biochemical indicators including total bilirubin (TBIL), direct bilirubin (DBIL), gamma-glutamyl transpeptidase (GGT), alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), and total bile acids (TBA) were also collected. The study implemented nnU-Net to perform automated gallbladder segmentation across both fasting and postprandial ultrasound examinations. The configuration file (dataset.json) and the cross-validation results (5-fold) with detailed segmentation performance metrics were also provided.
DOI: 10.6084/m9.figshare.28638422.v2
title: cloud_zone_DEM_recounstructed.rar

description: Integrating Multisource Data and Deep Learning Methods for High-resolution Mountainous DEM Reconstruction in Cloud Areas
DOI: 10.17632/hdb93dwt2x
title: An open design for a low-cost open-loop subsonic wind tunnel for aerodynamic measurement and characterization 

description: A wind tunnel is an essential device for aerodynamic modeling and measurement. High cost and relatively huge size with no open market design hinder the wind tunnel from being widely available in laboratory design for universities and small R&D companies, particularly in a developed country with limited research funding. Thus, most aerodynamic modeling and measurement are done by simulating through computer software which leads to high deviation as the nature of wind is unpredictable. This project aims to provide an open design for a relatively low-cost wind tunnel that universities and R&D companies can quickly adapt. An open design for an open-loop wind tunnel is presented in this article. The proposed wind tunnel design is specifically intended to help the researcher with the aerodynamic measurement with minimum cost for building, customizable design, and reliable measurement. The components, parts, and equipment use the widely available part, which can be obtained across the globe. Validation and characterization are done using software simulation and actual measurement through the device. The proposed design can meet the criteria for aerodynamic measurement and can help the researcher provide a better analysis by combining the actual measurement and software simulation.
DOI: 10.17632/ysmp99ftng
title: Supplementary Tables - Pruritic Skin Conditions Are Associated with Increased Risk of Infection, Scarring, and Irritable Bowel Syndrome Post-Burn: A Retrospective Database Study

description: Supplementary Tables for the following article: "Pruritic Skin Conditions Are Associated with Increased Risk of Infection, Scarring, and Irritable Bowel Syndrome Post-Burn: A Retrospective Database Study"
DOI: 10.6084/m9.figshare.12712184.v1
title: Anole Filed Activity Data R

description: Field activity data formatted for use in R. Includes, but column order left to right: Observation #, # of dewlap flaps, % of observation period spent active, body temperature, species, length of observation in seconds.
DOI: 10.6084/m9.figshare.14138405.v2
title: Supplementary Tables

description: Supplementary tables for the study by Watson et al. titled "Adaptive ecological processes and metabolic independence drive microbial colonization and resilience in human gut".<br><br>The pre-print is available here:<br>https://www.biorxiv.org/content/10.1101/2021.03.02.433653v1<br>
DOI: 10.6084/m9.figshare.14484762.v1
title: CMIP6 Global and pan-Arctic Temperature

description: Annually averaged surface-air temperature from CMIP6 models for the following experiments: historical, ssp126, ssp245, and ssp585. Also included is the average of four observational records: Berkeley Earth (1850-2014), GISTemp v4 (1880-2014), HadCRUT4.6.0.0 (1850-2014) and NOAAGlobalTemp v5 (1880-2014). Before an overall average is calculated, the Berkeley Earth and HadCRUT datasets are extrapolated for the 1850-1879 period based on their linear relationship with the average of the GISTemp and NOAAGlobalTemp records. The column "tglobal" includes the globally averaged temperature (K), and "tregion" includes the average temperature for the region north of 60°N.
DOI: 10.6084/m9.figshare.26393533.v1
title: BMF datasets

description: Two OOD datasets for testing the OOD generalization capability of the proposed BMF model
DOI: 10.6084/m9.figshare.28138733.v1
title: Supporting data: Beware of so-called ‘good’ correlations: a statistical reality check on individual mRNA–protein predictions

description: These are the R codes (organised by figure) and Excel spreadsheet in support of an essay that provides a statistical reflection and caveat on the concept of correlation strength in the context of transcriptomics-proteomics studies. The essay is a caveat for cell biologists, data scientists, and biostatisticians who should recognise that mRNA–protein correlation alone is insufficient to justify using a single mRNA quantification to infer the amount or function of its corresponding protein.
DOI: 10.6084/m9.figshare.28244372.v1
title: primary data

description: Host selectivity or preference plays a critical role in enabling parasitic plants to identify suitable hosts and influence plant community dynamics. Phosphorus (P) is known to affect the growth of root hemiparasitic plants and their interaction with single host species, but its role in shaping host selectivity across multiple hosts is unclear. In a pot experiment, we evaluated whether the root hemiparasitic plant <i>Pedicularis kansuensis</i> exhibits selective parasitism on legumes (<i>Medicago sativa</i>) versus grasses (<i>Elymus nutans</i>) and assessed the impact of soil P availability on this preference.
DOI: 10.6084/m9.figshare.28608113.v1
title: Responses of naturalized alien plants to soil heterogeneity and competition vary with the global naturalization success of the native competitors

description: The files include the R Markdown (Analyses_JE2025.rmd), output file (Analyses_JE2025.html), dataset (Data_JE2025.csv), and description file (Description_JE2025.txt) for the statistical analyses presented in Wei & van Kleunen 2025. Responses of naturalized alien plants to soil heterogeneity and competition vary with the global naturalization success of the native competitors, Journal of Ecology.<br>
DOI: 10.17632/4z2cddkv3k
title: Assessing biological reference points for geoduck clam fishery

description: Files
1.The "refpoints.m" file contains a script to be used with the MATLAB software. The script calculates the probabilities that the biomass of a marine sessile resource as Panopea globosa will reach four fishery management reference points while being exploited at a constant exploitation rate (Larios-Castro et al., 2023).
2.The file "PreviousYears.xlsx" is an example matrix of size 4x4 with fictitious data on the magnitude of biomass three or four years prior to reaching the values defined as reference points (65%, 50%, 40%, and 30% with respect to virgin biomass). This array is necessary for the "refpoints.m" function to work.

Use
1. The "refpoints" function creates four excel (.xls) files (Management Threshold Point, 0.65; Target Reference Point, 0.5; Limit Reference Point 0.4; and Depleted, 0.3), each containing a matrix of the calculated probabilities of reaching a fishery management reference point as the stock biomass is exploited and decreases.
The columns of the matrix of each file correspond to 1. the Bt/Bv values. 2 - 7 correspond to the probabilities obtained considering six different standard deviations, the optimal value, a decrease and four increments with respect to the optimal value (sigmas = -10%, 0% +5%, +10%, +20%, +30 %).
Additionally, the probability values calculated for each reference point will appear in the command window from the MATLAB interface.
2. The "refpoints" function needs an array in a file with a ".xlsx" extension previously constructed by the user (for example, PreviousYears.xlsx). This matrix should contain the Bt/Bv values for the three or four years prior to the reference point.
The function will ask to select the .xlsx file manually, so you will have to save a copy in the "Current Folder" from the MATLAB interface along with the function file "refpoints.m".
3. "Ref" is a necessary vector of the four values corresponding to the four reference points. It must be previously defined by the user, for example: Ref = [0.65 0.5 0. 4 0.3]. With this option you can change the reference point values if necessary.
4. The "refpoints" function returns the values derived from the different standard deviations (sigmas) obtained from the "previous years" matrix.

Bibliography:
Larios-Castro, E., Morales-Bojórquez, E., Peláez, S. S. G., Díaz-Uribe, J. G., Luquin-Covarrubias, M. A., & Villalobos, H. (2023). An enhancement in the management practices of geoduck clam Panopea globosa: The estimation of reference points in the short and long term. Ocean & Coastal Management, 243, 106755.
DOI: 10.17632/t37z439sd9
title: Proporción de Morteros de Cal y Tipos de Cargas

description: RESUMEN Este base de datos es una de las contribuciones del proyecto Estudio de Materiales Constitutivos y Degradación de Estuco y Pigmentos en Sitios Arqueológicos del Estado de Campeche (PEMDEPSAC) el cual surge de una colaboración interinstitucional entre la Sección de Restauración del Centro INAH Campeche y el Laboratorio Nacional de Ciencias para la investigación y Conservación del Patrimonio Cultural, Centro de Investigación en Corrosión (LANCIC-CICORR) de la Universidad Autónoma de Campeche, el cual cuenta con la colaboración del Laboratorio Nacional de Nano y Biomateriales (LANNBIO) del CINVESTAV Mérida. Durante el estudio de morteros prehispánicos mayas, los coautores nos percatamos de la necesidad de contar con una base de datos de morteros de reciente factura y así poder realizar algunas interpretaciones en morteros antiguos, respecto a proporción y tipo de cargas utilizadas, y a procesos diagenéticos en los morteros antiguos que los modernos aún no presentan. ABSTRAC This database is one of the contributions of the project Study of Constitutive Materials and Degradation of Stucco and Pigments in Archaeological Sites of the State of Campeche (PEMDEPSAC) which arises from a collaboration inter-institutional coordination between the Restoration Section of the INAH Campeche Center and the National Laboratory of Sciences for research and Conservation of Cultural Heritage, Corrosion Research Center (LANCIC-CICORR) of the Autonomous University of Campeche, and the collaboration of the Laboratory Nacional de Nano y Biomaterials (LANNBIO) of CINVESTAV Mérida. During the study of Maya pre-Hispanic mortars, the coauthors realized the need to have a database of mortars of recent creation in order to be able to make some interpretations in ancient mortars, with respect to proportion and type of aggregates used, and diagenetic processes in the old mortars that the moderns do not yet present.
DOI: 10.6084/m9.figshare.16632286.v2
title: Supplementary Data File 8

description: Integrated BIONIC Features. Learned BIONIC features from yeast networks (protein-protein interaction, co-expression, and genetic interaction) integrated and used in <strong>Fig. 2, 3, 6</strong>.
DOI: 10.6084/m9.figshare.22213918.v1
title: Code Availability Matlab

description: In this file, we provide examples of how to plot some signals presented by this dataset. The example has a menu where the user can indicate a specific signal to be visualized.
DOI: 10.6084/m9.figshare.91517.v5
title: Viral and Epidemiological Determinants of the Invasion Dynamics of Novel Dengue Genotypes

description: Figure included in the study "Viral and Epidemiological Determinants of the Invasion Dynamics of Novel Dengue Genotypes" in PLoS NTD, 2010. Abstract: "Dengue has become a major concern for international public health. Frequent epidemic outbreaks are believed to be driven by a complex interplay of immunological interactions between its four co-circulating serotypes and large fluctuations in mosquito densities. Viral lineage replacement events, caused for example by different levels of cross-protection or differences in viral fitness, have also been linked to a temporary change in dengue epidemiology. A major replacement event was recently described for South-East Asia where the Asian-1 genotype of dengue serotype 2 replaced the resident Asian/American type. Although this was proposed to be due to increased viral fitness in terms of enhanced human-to-mosquito transmission, no major change in dengue epidemiology could be observed. Here we investigate the invasion dynamics of a novel, advantageous dengue genotype within a model system and determine the factors influencing the success and rate of fixation as well as their epidemiological consequences. We find that while viral fitness overall correlates with invasion success and competitive exclusion of the resident genotype, the epidemiological landscape plays a more significant role for successful emergence. Novel genotypes can thus face high risks of stochastic extinction despite their fitness advantage if they get introduced during episodes of high dengue prevalence, especially with respect to that particular serotype. The rarity of markers for positive selection has often been explained by strong purifying selection whereby the constraints imposed by dengue's two-host cycle are expected to result in a high rate of deleterious mutations. Our results demonstrate that even highly beneficial mutants are under severe threat of extinction, which would suggest that apart from purifying selection, stochastic effects and genetic drift beyond seasonal bottlenecks are equally important in shaping dengue's viral ecology and evolution."
DOI: 10.17632/8tzx9dwryc
title: Articles of Source Camera Forensics classified based on the Source Camera Target Model and Problem Classes

description: Classification of research papers in accordance to the Source Camera Target Model and the Source Camera Forensics problem classes.
DOI: 10.17632/z2ffhznyj6
title: Dataset of microplastics in the mangrove brachyuran crabs at Setiu Wetlands, Peninsular Malaysia

description: The dataset presents the abundance of MPs categorized into different types and colours in 233 brachyuran crab (stomach) samples collected for dry and wet seasonal periods from Setiu Wetlands, Peninsular Malaysia. The morphometric measurements of the crab samples were also presented.
DOI: 10.6084/m9.figshare.21235524.v1
title: Framingham_20142015.xlsx

description: Excel data set for SPSS
DOI: 10.6084/m9.figshare.4265573.v1
title: In-silico model input data

description: Input data to execute the simulations using FEB3 (<i>Phoebe</i>).
DOI: 10.17632/8rwpvrw4hw
title: Dataset of MOOCs' Reviews from Stepik on Russian Language

description: Dataset consists of 5721 reviews from 102 MOOCs extracted from Stepik platform on Russian language
DOI: 10.17632/gmgcdhmmdx
title: Spatial Transcriptional Landscape of Human Heart Failure

description: Using the GeoMx whole human transcriptome digital spatial profiler, we spatially resolved gene expression profiles in failing human hearts, accounting for cell type and clinical and histological features. We first described how tissue segmentation using cell-type specific antibodies could reveal unique gene expression signatures of cardiomyocytes, endothelial cells, and fibroblasts in cardiac tissue. Second, gene regulation in HF appears to be cell-type specific and may even include signatures in opposing directions across cell types, which highlights the limitation of previous bulk transcriptional profiling. Third, spatial transcriptional profiling enabled us to find detailed gene expression signatures for typical histologic features related to HF. Lastly, additional consideration of histologic features in gene expression profiling on top of clinical information provides a unique resource for further research into the tipping point for irreversible structural changes in HF progression.
DOI: 10.6084/m9.figshare.2060724.v1
title: Analyzing Presidential Speeches with Topic Modeling

description: This file set includes the final paper, original data, python scripts, and output logs for my term project in Introduction to Digital Scholarship at the University of Tennessee to assess the utility of a computational analytic technique called probabilistic topic modeling to identify latent topics or themes present in a large corpus of textual information. I set out to accomplish this goal by performing a topic modeling text analysis on a corpus of 622 key U.S. presidential speeches identified by the University of Virginia Miller Center and archived on their web site at http://millercenter.org/president/speeches.<br>The results of this project, together with a review of the available literature on topic modeling, suggest that this technique is an effective tool for mining large data sets to identify latent themes or topics. The results of the topic modeling analysis of the presidential speeches suggest that the technique accurately identified latent themes or discourses across different presidential speeches over time. The results also suggest that it is an effective tool for producing new insights into the history of presidential speeches, including finding similarities between speeches that otherwise might not be apparent.
DOI: 10.6084/m9.figshare.21972662.v15
title: Data on the influence of foreign R&D on the innovation performance of China's high-tech industries and its spatial spillover effect

description: It contains data for 11 items, which are: <strong>Technology innovation</strong> <strong>Product innovation</strong> <strong>Technology innovation 1</strong> <strong>Product innovation 1</strong> <strong>Foreign R&D investment</strong> <strong>Local R&D investment</strong> <strong>Industrial worker</strong> <strong>Industrial export trade</strong> <strong>Local financial support for science and technology</strong> <strong>Local social capital</strong> <strong>Funds for industrial technological transformation</strong>
DOI: 10.17632/4748g4y6zm
title: Mitochondria-targeted ROS scavenger JP4-039 improves cardiac function in a post myocardial infarction animal model and induces angiogenesis in vitro

description: Data from manuscript named: Mitochondria-targeted ROS scavenger JP4-039 improves cardiac function in a postmyocardial infarction animal model and induces angiogenesis in vitro. 
Data organized in folders by figure number.