cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6z6rpf9w8z
title: DATASET S3: Data used for the differential expression analyses in the article: Transcriptomic profile of the cockle Cerastoderma edule exposed to Diarrhetic Shellfish Toxins seasonal contamination. Domínguez-Pérez, D. et al., 2021.

description: 47496_isoforms.box: 47,496 ORFs encoded by 33,665 genes in .box format exported by the 
OmicsBox v1.4.11, formerly used to retrieve all the related isoforms for differential expression analyses.

relative_counts_per_category_[counts_isoforms].pdf: Relative counts per isoform/transcript obtained for isoform/gene-level quantification.

counts_genes.box and counts_isoforms.box: The resulting count tables in .box format exported by OmicsBox v1.4.11, corresponding to the expression estimated at gene-level and isoform-level, respectively. 

omicsbox_count_table_genes.txt and omicsbox_count_table_isoforms.txt: The resulting count tables in .text format exported by OmicsBox v1.4.11, corresponding to the expression estimated at gene-level and isoform-level, respectively. 

ce_dge_vs_ce_dgc.box and ce_ge_vs_ce_gc.box: Results of the differential expression analyses in .box format exported by OmicsBox v1.4.11, corresponding to the pairwise comparison between exposed samples to DSTs and control obtained from the digestive gland (ce_dge_vs_ce_dgc.box) and gills (ce_ge_vs_ce_gc) of the cockle C. edule.

pairwise_differential_expression_wr_ce_dge_vs_ce_dgc.pdf: Summary file of the differential expression analyses from the digestive gland of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

pairwise_differential_expression_wr_ce_ge_vs_ce_gc.pdf: Summary file of the differential expression analyses from the gills of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

normalized_counts_ce_dge_vs_ce_dgc.txt: Normalized counts obtained from the differential expression analyses from the digestive gland of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.

normalized_counts_ce_ge_vs_ce_gc.txt: Normalized counts obtained from the differential expression analyses from the gills of the cockle C. edule. The pairwise comparison was performed between samples exposed to DSTs and control (without DSTs), using NOISeq v2.30.0, with 5 technical replicates simulated per sample and p-value 0.01.
DOI: 10.17632/83m4y9fym5
title: 123

description: Soil incubation methods
DOI: 10.17632/3bmhsr3ytx
title: Dataset 4P.2: Solutions files, sigma = 15, part 2 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All final posreal counts files for Paramotopy runs with \sigma = 15.
DOI: 10.17632/3nm2z89gj6
title: Data for: The rock-forming minerals and macroscale mechanical properties of asteroid rocks

description: HaH 346 meteorite samples are tested using the nanoindentation experiment with Berkovich indenter. The data includes the Young’s modulus of different rock-forming minerals in HaH 346 meteorites measured by nanoindentation test.
DOI: 10.17632/5zf83p3tv6
title: Data for: The influence of energy recovery on the Overall Efficiency of acoustic sources at low frequencies

description: Simulation in LTspice IV and in combination with MATLAB R2015b, related to Fig.13a in the manuscript.
DOI: 10.17632/39v2mnc453
title: Play fair algorithm

description: Playfair cipher is an interesting data encryption technique with a medium level of complexity, and therefore, issuitable for security of wireless and mobile systems. Different sizes of the matrices used for key have been previously studied by researchers, but no study has been done so far that provides a comparative analysis of different matrix sizes of a key. This paper is motivated by this observation, and provides a comparison of three different matrix sizes used for the key. These matrices are 9 x9, 10 x 10, and 11 x 11.Different experiments were performed which indicate that for the data used herein, the size of the plain-text does not have a significant effect on the encryption of the output. However, the size of the key does have a notable effect and the encryption level increases with big keys of bigger sizes
DOI: 10.17632/b93kjpx4f9
title: experimental materials

description: experimental materials
DOI: 10.17632/k4gj2j73xw
title: Data for: (μ+λ) Evolution Strategy algorithm in well placement, trajectory, control and joint optimisation

description: ESgeneral.m file is a matlab code which contains the general ES algorithm used for this study. The code could be run immediately for some analytical functions. It also could be used for well placement and/or control optimisation. fig7results.mat is a mat file containing results (mean NPV and number of function evaluations) for each case and each algorithm. These results could be used to re-plot figure 7.
DOI: 10.17632/6nwr9d8z78
title: Data for: Formation processes of dunites and chromitites in Orhaneli and Harmancık ophiolites (NW Turkey): evidence from in-situ Li isotopes and trace elements in olivine
DOI: 10.17632/5nj888bkgn
title: Identification of new classes of antimalarial compounds by targeting Single-Stranded DNA binding protein of Plasmodium falciparum

description: This data contains supplementary tables and figures
DOI: 10.17632/mpfw9td2sw
title: Female aggression and male phenotype in two Malurus fairywrens

description: While the impacts of male phenotypic quality on female mating decisions are well-studied, less is known about how male attributes may influence female aggressive behavior. To address this, we evaluated the degree to which females mated to more attractive males may behave more aggressively toward simulated female rivals, as might be predicted if intrasexual competition exists over access to mates. We tested this idea in two sister taxa of fairywren (Maluridae) with markedly distinct life-history strategy and mating system: white-shouldered fairywrens (Malurus alboscapulatus moretoni) in Papua New Guinea, a species with year-round territoriality and female-limited plumage polymorphisms, and red-backed fairywrens (M. melanocephalus melanocephalus) in temperate Australia, a species with seasonal breeding and one in which females do not exhibit any plumage ornamentation. We characterized male quality by assessing the plumage coloration of the crown and scapular feather tracts via reflectance spectrometry alongside three morphological characteristics that are likely important in Malurus fairywrens: body mass, cloacal protuberance volume, and tail length. We quantified female aggression via the use of mirror image stimulations: assays which assess an individual’s reaction to a rival conspecific of equivalent visual quality, as represented by their own reflection. We found that female white-shouldered fairywrens were more aggressive during mirror assays than female red-backed fairywrens. There was a non-significant tendency for more aggressive white-shouldered fairywren females to have heavier mates with longer tails, but no indication that attributes of male phenotype predicted female aggression in the red-backed fairywrens.

Included in this depository are: 
(1) R source code (including R studio project)
(2) Raw spectral readings for feathers collected from white-shouldered and red-backed fairywrens
(3) Behavioral responses to mirror image stimulation assays
DOI: 10.17632/r557572r2v
title: Dataset describing the genome wide effects on transcription resulting from alterations in the relative levels of the bZIP transcription factors Atf1 and Pcr1 in Schizosaccharomyces pombe

description: The S. pombe cells used in this study include wild-type, Δatf1 and Δatf1Δpcr1, wt cells overexpressing Pcr1and Δatf1 cells overexpressing Pcr1. Total RNA was isolated from all these cells and processed for transcriptome sequencing.
DOI: 10.17632/6hcv2v3vgw
title: Experimental Development of Calcium Looping Carbon Capture Processes: An Overview of Opportunities and Challenges - MDPI Data

description: This following data was used for all analysis on 'Experimental Development of Calcium Looping Carbon Capture Processes: An Overview of Opportunities and Challenges'.
DOI: 10.17632/3jrs5ffw2s
title: Data for: Axial pipe-soil interaction during pipeline-walking analysis of pipelines placed on sandy soils

description: Experimental data of pipe-soil axial interaction
DOI: 10.17632/j2d4tjh7k2
title: The Effect of Negative Written Emotional Disclosure on Eye Movements Changes, Static Balance and Symptoms of Depression of Anxious Athletes

description: data for article in SPSS (version 25)
DOI: 10.17632/52zsm98f89
title: Les enseignant(e)s, le numérique et le confinement (Guadeloupe)

description: Informations générales : Les enseignant(e)s, le numérique et le confinement (Guadeloupe) - 121 questionnaires. Projet de recherche : Formation et Enseignements en temps de COVID-19 dans les outremers français. Mots-clés : Inégalité, télétravail, outremers, Guadeloupe, enseignant(e)s, ultramarins, numérique
DOI: 10.17632/44hxrk3cdr
title: Bibliography of literature reviewed of all sources that include analysis of bioapatite.

description: Bibliography of literature reviewed of all sources that include analysis of bioapatite.
DOI: 10.17632/28g5pxvfz5
title: Data for: One step synthesis of monodisperse thiol-ene clickable polymer microspheres and application on biological functionalization

description: 1. Confocal microscope raw data for Fig. 10 in the manuscript. 2. GPC raw data for P(THPAA)-TTC and P(THPAA-b-AA)-TTC. These raw data were treated by Origin Pro 9.2, giving the GPC curves (Fig. 1) 3. NMR raw data for biotin-succinimide (Fig. S3), biotin disulfide (Fig. S4), DDMAT (RAFT agent), THPAA (functional monomer, Fig. S1), PTHPAA120-b-AA200 (macro-RAFT agent, Fig. S1) and PMMA microspheres (Fig. 4). 4. SEM processed data by Image pro 6.0 for particle size statistics, giving size distribution histogram (Fig. 3). 5. UV-VIS raw data for Fig. 8 and Fig. 9. 6. XPS raw data for PMMA microspheres before and after biotin click (Fig. 7)
DOI: 10.17632/6dhrs9v9zf
title: A scaled subtraction of ATR-FTIR spectra and spectra identification using Spectral Library Databases

description: With the help of the three IR spectral libraries of General Library IR (350 spectra), SWGDRUG IR library-31 May 2018 (503 spectra) and Demo Library (200 spectra), the subtracted FTIR spectra were successfully identified after spectral library search. The spectral matching operation was performed by software algorithm (standard search algorithm) with one main component mode in OPUS (Bruker).
DOI: 10.17632/dzvgscbd3d
title: Data for: Plant functional traits and viewer characteristics co-regulate cultural services provisioning by stormwater bioretention

description: Plant trait data for 15 native Southern California plants recommended for use in stormwater bioretention
DOI: 10.17632/z3zvw52p6j
title: Shen Gao's Flow-through Data in 2023

description: Input and output solution concentrations and temperature gradient collected.
DOI: 10.17632/6wkyg9zd5v
title: Descriptive statistics for Governance quality, FDI inflow and CO2 emissions in Africa

description: Descriptive statistics for  research article titled Governance quality, FDI inflow and CO2 emissions in Africa
DOI: 10.17632/kbj7pg5jn4
title: Data for: Rare-earth element yttrium enhances the tolerance of curly-leaf pondweed (Potamogeton crispus) to acute nickel toxicity
DOI: 10.17632/yfxthhhdtp
title: The Binding Prediction Model of The Iron-responsive Element Binding Protein and Iron-responsive Elements

description: Iron is essential to fulfilling an indispensable role in the biological process in human physiology. Various proteins were known involved in iron metabolism. One of the proteins called iron-responsive element binding protein (IRP) which acts as master iron of cellular iron homeostasis. There are two IRP known to date, which is: IRP1 and IRP2. Previous studies showed IRP bind to iron-responsive elements (IRE) located in 5’-UTR of the transferrin receptor 1. The interaction of IRP/IRE is well studied through many years to find a better treatment for the cellular disorder in iron metabolism. However, the structural differences of both IRP and the binding prediction model of IRP/IRE remain unclear. This dataset provides structure predictions of IRP/IRE by using reliable bioinformatics tools .
DOI: 10.17632/ydb6sm4n9p
title: COVID-19 OZONE IN CHINA

description: COVID-19 OZONE IN CHINA
DOI: 10.17632/44m6rzdmv2
title: Data for “Modeling rainfall-infiltration-runoff processes on sloping surfaces subject to rapidly changing soil hydraulic properties during seal formation”

description: The dataset includes the simulated and observed data for “Modeling rainfall-infiltration-runoff processes on sloping surfaces subject to rapidly changing soil hydraulic properties during seal formation”.
DOI: 10.17632/6k3ft58vb2
title: Supplementary Data to the Dissertation "Proximity biotinylation at organelle contact sites reveals GRAMD1B as a sterol transporter acting at the lysosome-ER interface"

description: Supplementary data to the work presented in the dissertation by Valentin Schoop with the Title "Proximity biotinylation at organelle contact sites reveals GRAMD1B as a sterol transporter acting at the lysosome-ER interface"
Group of Dr. Doris Höglinger. Submitted in March 2022 at Heidelberg University
DOI: 10.17632/mg6dtjp5gp
title: BDD - Supplementary Material

description: Supplementary material for Etiology and epidemiology of digital dermatitis in Australian dairy herds by McPherson et al. 2024
DOI: 10.17632/wnzgmzhhzn
title: Data for: Associations between isometric quadriceps strength characteristics, knee flexion angles, and knee extension moments during single leg step down and landing tasks after anterior cruciate ligament reconstruction

description: Normalized linear loading rate, vertical ground reaction force, knee extension moment at initial contact, peak knee extension moment, knee flexion angle at initial contact, and peak knee flexion angle during single leg crossover hop and single leg step down tasks in individuals with a history of ACLR.
DOI: 10.17632/4wr3hd2ygj
title: LINF_290008600

description: mitoribosomal protein mL91
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xs2sphbtz6
title: Pten-NOLC1 Fusion Promotes C-MET and EGFR Signaling in Human Cancers (RNAseq Sample HB46T)

description: Prostate transcriptome data
DOI: 10.17632/7myk8kk2s2
title: The Ultimate Laboratory Guide: Food Additives

description: Food additives are compounds that are mostly added to industrially produced foods, such as processed foods, for technical reasons such as enhancing food safety, extending the shelf life of food, or altering the sensory qualities of food.
 
Achieving visually appealing and commercially viable goods involves a sophisticated and delicate process of integrating colors into food additives. In addition to providing brilliant hues, natural colors made from plant extracts, such beetroot and turmeric extracts, also satisfy the growing demand from consumers for natural components. On the other hand, artificial coloring offers food scientists a wider range of hues, making it possible to precisely control and customize color. The use of these hues in food formulas demonstrates the sophisticated technological use that characterizes contemporary food manufacturing methods.
DOI: 10.17632/t5dyns635c
title: Moh Adib Jauhar PTIK UAS

description: Mencari jurnal penelitian sesuai intruksi Dari bapak bosen
DOI: 10.17632/3tymnz7pjp
title: The effect of board characteristics on the efficiency of Russian public companies

description: In the modern world, the board of directors plays a key role in making strategic decisions, monitoring the activities of the executive body and ensuring the effectiveness of the company. One of the most important factors is the characteristics of the members of the board of Directors. The purpose of this dissertation is to study the impact that the characteristics of the board members have on the company's performance indicators. The dissertation research reveals the characteristics of the structure and personal composition of the board of directors that affect the effectiveness of public Russian companies. To conduct an empirical analysis, data were collected on 100 Russian public companies for 2015-2020 and a regression model with random effects was built. It is shown that the board of directors should be composed of qualified and experienced professionals who can make informed decisions and effectively control the activities of the executive body. The WACC rate adjustment methodology developed in this paper allows us to take into account the influence of the board of directors on the company's value in practice with a profitable valuation approach, which provides a more comprehensive assessment of the company's value.
DOI: 10.17632/vt9mshcpsf
title: Data for: Streamlining Referring Physician Communication with Radiology

description: Monthly website traffic
DOI: 10.17632/5cmwtcm7tw
title: Obeticholic acid attenuates the intestinal barrier disruption in a rat model of short bowel syndrome.

description: Background: Short bowel syndrome (SBS) features nutrients malabsorption and impaired intestinal barrier. Patients with SBS are prone to sepsis, intestinal flora dysbiosis and intestinal failure associated liver disease. Protecting intestinal barrier and preventing complications are potential strategies for SBS treatment. This study aims to investigate the effects of farnesoid X receptor (FXR) agonist, obeticholic acid (OCA), have on intestinal barrier and ecological environment in SBS. 
Methods and results: Through testing the small intestine and serum samples of patients with SBS, impaired intestinal barrier was verified, as evidenced by reduced expressions of intestinal tight junction proteins (TJPs), increased levels of apoptosis and epithelial cell damage. The intestinal expressions of FXR and related downstream molecules were decreased in SBS patients. Then, global FXR activator OCA was used to further dissect the potential role of the FXR in a rat model of SBS. Low expressions of FXR-related molecules were observed on the small intestine of SBS rats, along with increased proinflammatory factors and damaged barrier function. Furthermore, SBS rats possessed significantly decreased body weight and elevated death rate. Supplementation with OCA mitigated the damaged intestinal barrier and increased proinflammatory factors in SBS rats, accompanied by activated FXR-related molecules. Using 16S rDNA sequencing, the regulatory role of OCA on gut microbiota in SBS rats was witnessed. LPS stimulation to Caco-2 cells induced apoptosis and overexpression of proinflammatory factors in vitro. OCA incubation of LPS-pretreated Caco-2 cells activated FXR-related molecules, increased the expressions of TJPs, ameliorated apoptosis and inhibited overexpression of proinflammatory factors.
Conclusion: OCA supplementation could effectively ameliorate the intestinal barrier disruption and inhibit overexpression of proinflammatory factors in a rat model of SBS and LPS-pretreated Caco-2 cells. As a selective activator of FXR, OCA might realize its protective function through FXR activation.
DOI: 10.17632/t9xhg29zxh
title: LDHU3_04.1080

description: mitoribosomal protein uL30m Leishmania donovani (HU3 strain)
DOI: 10.17632/wjv83t7264
title: LSSM for long-term ECM-cell interaction_Fig.3+Fig. 4

description: LSSM for long-term ECM-cell interaction_Fig.3+Fig. 4
DOI: 10.17632/nwkspbpf4v
title: Supplemental Material of "Atopic Dermatitis Relapse and Predictive Factors After Treatment Discontinuation: A Real-World Study of Selective Janus Kinase 1 Inhibitors versus Dupilumab"

description: Supplemental table S1-S6 and supplemental figure 1.
DOI: 10.17632/8dg67jn3y9
title: Cell Stress and Chaperones - Data Repository

description: Muscle damage in the heat data file.
DOI: 10.17632/my89ppr727
title: Data for: Inhibition of steroid receptor coactivator-1 in the hippocampus impairs the consolidation and reconsolidation of contextual fear memory in mice

description: This file include raw data for all results in the manuscript.
DOI: 10.17632/89mrnz3ftj
title: A study of Yanjun. et al

description: Although the benefits of vertical sleeve gastrectomy surgery (VSG) are clear, the molecular mechanisms by which VSG alleviates obesity and its complications remain unclear. In addition to observing increasedthat circulating bile acid (BA) levels are increased after VSG in mice, here we found that the expression of sterol 12α-hydroxylase (CYP8B1), a key enzyme in controlling the ratio of 12α-hydroxylated (12α-OH) BAs to non-12α-OH BAs, is strongly downregulated after VSG. Using genetic mouse models of CYP8B1 overexpression, knockdown, and knockout, we demonstrated that VSG-induced alterations to the enterohepatic BA circulation and BA composition depend on CYP8B1. As a consequence of these alterations, intestinal lipid absorption is restricted and the gut microbiome (GM) is shifted, which contributes to the metabolic effects of VSG. These results suggest that CYP8B1 is a critical downstream target of VSG. Therefore, modulation of BAbile acid composition and GMgut microbiota profile may be a promising strategy for the development of therapies that non-invasively mimic bariatric surgery to treat obesity and its complications.
DOI: 10.17632/zw8dxvwj52
title: LINF_110013300

description: 40S ribosomal protein S21; Leishmania infantum
DOI: 10.17632/5zncg9bhkr
title: SRFC preseason abundance forecast mean versus median comparison code and data

description: Supporting data and code for analyses comparing the use of mean versus median when converting the Sacramento River Fall Chinook (SRFC) abundance index (SI) forecast from the logarithmic to arithmetic scale.
DOI: 10.17632/cy2cxwn23d
title: Social awareness paper
DOI: 10.17632/g3b94w99c9
title: DATA OF: ABSOLUTE COST ADVANTAGE AND SECTORAL COMPETITIVENESS: EMPIRICAL EVIDENCE FROM NAFTA AND THE EUROPEAN UNION

description: Following the theory of absolute cost advantage, our aim is to verify the hypothesis that, during 2000-2014, the real exchange rates (REERs) of the German and the US manufacturing sectors vis-à-vis their EU-28 and NAFTA partners, respectively, have been governed by the relative vertically integrated unit labour costs (RVIULCs) and the intrasectoral gap of the rate of profit (Rs). Using panel cointegration techniques, we elaborate three econometric models. The first for the NAFTA countries, where the United States (US) is taken as the reference (national) country; the second for the EU-28 with Germany as the national country; the third one agglutinates NAFTA and EU-28, where we consider US as the national country. The results suggest that there exists a stable long-run relationship between REERs, RVIULCs and Rs. Furthermore, cointegration vectors show that the competitiveness of both US and German manufacturing sectors is positively associated with the decrease in unit costs of production, while it is negatively related to the increase in the intrasectoral profitability gap.
DOI: 10.17632/3z6gjgvwn8
title: Dataset Ranking of Iberoamerican Universities

description: This dataset contains the criteria and evaluation of each university in Iberoamerica
DOI: 10.17632/44fhtn96kw
title: Rawdata_4

description: The dataset contains the raw data used for the figure in the manuscript "The UPR sensor IRE1a and the adenovirus E3-19K glycoprotein sustain persistent and lytic infections"
DOI: 10.17632/789652xcr3
title: PINK1/Parkin Influences Cell Cycle by Sequestering TBK1 at Damaged Mitochondria Inhibiting Mitosis

description: This data is the western blot data for Sarraf, Sideris et al. "PINK1/Parkin Influences Cell Cycle by Sequestering TBK1 at Damaged Mitochondria Inhibiting Mitosis”