cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3410134.v1
title: Skin 16S temporal microbiome

description: Updated 5th July, 2016<br>The enclosed contains data and scripts from the microbiome study titled "Seasonal analysis of the skin microbial community: insights into the core and temporal expansion of the pan-microbiome," authored by<br>Marcus H. Y. Leung (mhyleung@cityu.edu.hk),David Wilkins (david@wilkox.org), Hedwig H. L. Cheung (hedwig.ule@gmail.com), and Patrick K. H. Lee (patrick.kh.lee@cityu.edu.hk)*Please contact the following for correspondence: *B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong; E-mail: patrick.kh.lee@cityu.edu.hk; Tel: (852) 3442-4625; Fax: (852) 3442-0688.
DOI: 10.6084/m9.figshare.3410134.v2
title: Skin 16S temporal microbiome

description: Updated July 2016<br>The enclosed contains data and scripts from the microbiome study titled "Seasonal analysis of the skin microbial community: insights into the core and temporal expansion of the pan-microbiome," authored by<br>Marcus H. Y. Leung (mhyleung@cityu.edu.hk),David Wilkins (david@wilkox.org), Hedwig H. L. Cheung (hedwig.ule@gmail.com), and Patrick K. H. Lee (patrick.kh.lee@cityu.edu.hk)*Please contact the following for correspondence: *B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong; E-mail: patrick.kh.lee@cityu.edu.hk; Tel: (852) 3442-4625; Fax: (852) 3442-0688.
DOI: 10.6084/m9.figshare.3410134.v3
title: Skin 16S temporal microbiome

description: Update 31st March 2017<br>The enclosed contains data and scripts from the microbiome study titled "Individual and household attributes influence the dynamics of the personal skin microbiota and its association network," authored by<br>Marcus H. Y. Leung (mhyleung@cityu.edu.hk),Xinzhao Tong (xinzhtong2-c@my.cityu.edu.hk),David Wilkins (david@wilkox.org), Hedwig H. L. Cheung (hedwig.ule@gmail.com), and Patrick K. H. Lee (patrick.kh.lee@cityu.edu.hk)*Please contact the following for correspondence: *B5423-AC1, School of Energy and Environment, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong; E-mail: patrick.kh.lee@cityu.edu.hk; Tel: (852) 3442-4625; Fax: (852) 3442-0688.
DOI: 10.6084/m9.figshare.3410110
title: Data and code used in Animal Behaviour article "Accounting for syntax in analyses of countersinging reveals hidden vocal dynamics in a songbird with a large repertoire"

description: Data and code used in Animal Behaviour article "Accounting for syntax in analyses of countersinging reveals hidden vocal dynamics in a songbird with a large repertoire".<br>The uploaded data contains a single zip file, which itself contains several files and sub-folders, and includes a ReadMe file describing the data and code in detail. To access the data and decipher it, download and unpack the zip file and read the file called "Data ReadMe.docx".
DOI: 10.6084/m9.figshare.3410110.v1
title: Data and code used in Animal Behaviour article "Accounting for syntax in analyses of countersinging reveals hidden vocal dynamics in a songbird with a large repertoire"

description: Data and code used in Animal Behaviour article "Accounting for syntax in analyses of countersinging reveals hidden vocal dynamics in a songbird with a large repertoire".<br>The uploaded data contains a single zip file, which itself contains several files and sub-folders, and includes a ReadMe file describing the data and code in detail. To access the data and decipher it, download and unpack the zip file and read the file called "Data ReadMe.docx".
DOI: 10.6084/m9.figshare.3410104
title: Genetic Data for Alatina alata, a box jellyfish with a circumtropical distribution

description: Alignments and Tree file for data associated with the paper: "The Box Jellyfish Alatina alata Has a Circumtropical Distribution" by Jonathan W. Lawley1,2, Cheryl Lewis Ames2,3, Bastian Bentlage2, Angel Yanagihara4, Roger Goodwill5, Ehsan Kayal2, Kikiana Hurwitz5 and Allen G. Collins2,6<br>1 Departamento de Ecologia e Zoologia, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-970, Brazil2 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA3 Biological Sciences Graduate Program, University of Maryland, College Park, MD 20742, USA4 Department of Tropical Medicine, Medical Microbiology and Pharmacology John A. Burns School of Medicine, University of Hawai’i at Manoa, Honolulu, HI 96822, USA5 Department of Biology, Brigham Young University, Hawaii, Laie, HI 96792, USA6 National Systematics Laboratory of NOAA's Fisheries Service, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA<br>
DOI: 10.6084/m9.figshare.3410104.v1
title: Genetic Data for Alatina alata, a box jellyfish with a circumtropical distribution

description: Alignments and Tree file for data associated with the paper: "The Box Jellyfish Alatina alata Has a Circumtropical Distribution" by Jonathan W. Lawley1,2, Cheryl Lewis Ames2,3, Bastian Bentlage2, Angel Yanagihara4, Roger Goodwill5, Ehsan Kayal2, Kikiana Hurwitz5 and Allen G. Collins2,6<br>1 Departamento de Ecologia e Zoologia, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-970, Brazil2 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA3 Biological Sciences Graduate Program, University of Maryland, College Park, MD 20742, USA4 Department of Tropical Medicine, Medical Microbiology and Pharmacology John A. Burns School of Medicine, University of Hawai’i at Manoa, Honolulu, HI 96822, USA5 Department of Biology, Brigham Young University, Hawaii, Laie, HI 96792, USA6 National Systematics Laboratory of NOAA's Fisheries Service, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA<br>
DOI: 10.6084/m9.figshare.3410104.v2
title: Genetic Data for Alatina alata, a box jellyfish with a circumtropical distribution.

description: Alignments and Tree file for data associated with the paper: "The Box Jellyfish Alatina alata Has a Circumtropical Distribution" by Jonathan W. Lawley1,2, Cheryl Lewis Ames2,3, Bastian Bentlage2, Angel Yanagihara4, Roger Goodwill5, Ehsan Kayal2, Kikiana Hurwitz5 and Allen G. Collins2,6<br>1 Departamento de Ecologia e Zoologia, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-970, Brazil2 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA3 Biological Sciences Graduate Program, University of Maryland, College Park, MD 20742, USA4 Department of Tropical Medicine, Medical Microbiology and Pharmacology John A. Burns School of Medicine, University of Hawai’i at Manoa, Honolulu, HI 96822, USA5 Department of Biology, Brigham Young University, Hawaii, Laie, HI 96792, USA6 National Systematics Laboratory of NOAA's Fisheries Service, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA<br>
DOI: 10.6084/m9.figshare.3410095
title: Temporal dynamics between ‘HoBi’-like populations in calves

description: Nucleotide alignments of HoBi PIs and inoculums.
DOI: 10.6084/m9.figshare.3410095.v2
title: Temporal dynamics between ‘HoBi’-like populations in calves

description: Nucleotide alignments of HoBi PIs and inoculums.
DOI: 10.6084/m9.figshare.3410095.v1
title: Aligments

description: Nucleotide alignments of HoBi PIs and inoculums.
DOI: 10.6084/m9.figshare.3410047
title: DDB1 and CUL4 associated factor 11 (DCAF11) mediates degradation of Stem-loop binding protein at the end of S phase

description: In eukaryotes, bulk histone expression occurs in the S phase of the cell cycle. This highly conserved system is crucial for genomic stability and proper gene expression. In metazoans, Stem-loop binding protein (SLBP), which binds to 3′ ends of canonical histone mRNAs, is a key factor in histone biosynthesis. SLBP is mainly expressed in S phase and this is a major mechanism to limit bulk histone production to the S phase. At the end of S phase, SLBP is rapidly degraded by proteasome, depending on two phosphorylations on Thr 60 and Thr 61. Previously, we showed that SLBP fragment (aa 51–108) fused to GST, is sufficient to mimic the late S phase (S/G2) degradation of SLBP. Here, using this fusion protein as bait, we performed pull-down experiments and found that DCAF11, which is a substrate receptor of CRL4 complexes, binds to the phosphorylated SLBP fragment. We further confirmed the interaction of full-length SLBP with DCAF11 and Cul4A by co-immunoprecipitation experiments. We also showed that DCAF11 cannot bind to the Thr61/Ala mutant SLBP, which is not degraded at the end of S phase. Using ectopic expression and siRNA experiments, we demonstrated that SLBP expression is inversely correlated with DCAF11 levels, consistent with the model that DCAF11 mediates SLBP degradation. Finally, we found that ectopic expression of the S/G2 stable mutant SLBP (Thr61/Ala) is significantly more toxic to the cells, in comparison to wild type SLBP. Overall, we concluded that CRL4-DCAF11 mediates the degradation of SLBP at the end of S phase and this degradation is essential for the viability of cells.
DOI: 10.6084/m9.figshare.3410047.v1
title: DDB1 and CUL4 associated factor 11 (DCAF11) mediates degradation of Stem-loop binding protein at the end of S phase

description: In eukaryotes, bulk histone expression occurs in the S phase of the cell cycle. This highly conserved system is crucial for genomic stability and proper gene expression. In metazoans, Stem-loop binding protein (SLBP), which binds to 3′ ends of canonical histone mRNAs, is a key factor in histone biosynthesis. SLBP is mainly expressed in S phase and this is a major mechanism to limit bulk histone production to the S phase. At the end of S phase, SLBP is rapidly degraded by proteasome, depending on two phosphorylations on Thr 60 and Thr 61. Previously, we showed that SLBP fragment (aa 51–108) fused to GST, is sufficient to mimic the late S phase (S/G2) degradation of SLBP. Here, using this fusion protein as bait, we performed pull-down experiments and found that DCAF11, which is a substrate receptor of CRL4 complexes, binds to the phosphorylated SLBP fragment. We further confirmed the interaction of full-length SLBP with DCAF11 and Cul4A by co-immunoprecipitation experiments. We also showed that DCAF11 cannot bind to the Thr61/Ala mutant SLBP, which is not degraded at the end of S phase. Using ectopic expression and siRNA experiments, we demonstrated that SLBP expression is inversely correlated with DCAF11 levels, consistent with the model that DCAF11 mediates SLBP degradation. Finally, we found that ectopic expression of the S/G2 stable mutant SLBP (Thr61/Ala) is significantly more toxic to the cells, in comparison to wild type SLBP. Overall, we concluded that CRL4-DCAF11 mediates the degradation of SLBP at the end of S phase and this degradation is essential for the viability of cells.
DOI: 10.6084/m9.figshare.3410020
title: Synthesis and antitumor activity evaluation of some N-heterocycles derived from pyrazolyl-substituted 2(3<i>H</i>)-furanone

description: Pyrazolyl-substituted 2(3<i>H</i>)-furanone was allowed to react with different nitrogen nucleophiles such as hydrazine hydrate, ethylenediamine, ethanolamine, and anthranilic acid to give pyrrolone and benzoxazinone derivatives. The acid hydrazide <b>3</b> was reacted with some carbonyl compounds such as 4-chlorobenzaldehyde, chloroacetyl chloride, and acetic anhydride to give thiazolidinone, oxadiazole, and pyridazinone derivatives. Selected examples of the synthesized compounds were evaluated as anticancer agents against three types of carcinoma cell lines (HePG 2, HCT116, and PC3), using <i>Doxorubicin</i> as a reference drug. The result revealed that some of the new compounds showed high activities. Compound <b>6a</b> was more potent than the standard drug. A docking study using MOE 2008.10 program was performed.
DOI: 10.6084/m9.figshare.3410020.v2
title: Synthesis and antitumor activity evaluation of some N-heterocycles derived from pyrazolyl-substituted 2(3<i>H</i>)-furanone

description: Pyrazolyl-substituted 2(3<i>H</i>)-furanone was allowed to react with different nitrogen nucleophiles such as hydrazine hydrate, ethylenediamine, ethanolamine, and anthranilic acid to give pyrrolone and benzoxazinone derivatives. The acid hydrazide <b>3</b> was reacted with some carbonyl compounds such as 4-chlorobenzaldehyde, chloroacetyl chloride, and acetic anhydride to give thiazolidinone, oxadiazole, and pyridazinone derivatives. Selected examples of the synthesized compounds were evaluated as anticancer agents against three types of carcinoma cell lines (HePG 2, HCT116, and PC3), using <i>Doxorubicin</i> as a reference drug. The result revealed that some of the new compounds showed high activities. Compound <b>6a</b> was more potent than the standard drug. A docking study using MOE 2008.10 program was performed.
DOI: 10.6084/m9.figshare.3410020.v1
title: Synthesis and Antitumor Activity Evaluation of Some N-Heterocycles Derived From Pyrazolyl-Substituted 2(3<i>H</i>)-furanone

description: Pyrazolyl-substituted 2(3<i>H</i>)-furanone was allowed to react with different nitrogen nucleophiles such as hydrazine hydrate, ethylenediamine, ethanolamine and anthranilic acid to give pyrrolone and benzoxazinone derivatives. The acid hydrazide <b>3</b> was reacted with some carbonyl compounds such as 4-chlorobenzaldehyde, chloroacetyl chloride and acetic anhydride to give thiazolidinone, oxadiazole, pyridazinone derivatives. Selected examples of the synthesized compounds were evaluated as anticancer agents against three types of carcinoma cell lines (HePG 2, HCT116 and PC3), using <i>Doxorubicin</i> as a reference drug. The result revealed that some of the new compounds showed high activities. Compound <b>6a</b> was more potent than the standard drug. Docking study using MOE 2008.10 program was performed.
DOI: 10.6084/m9.figshare.3409939
title: Regioselectivity and regiospecificity of benzoxazinone (2-isopropyl-4<i>H</i>-3,1-benzoxazinone) derivatives toward nitrogen nucleophiles and evaluation of antimicrobial activity

description: A novel group of 6-iodoquinazolin-4(<i>3H</i>)-one derivatives was prepared. The reaction of the benzoxazinone <b>3</b> with various nitrogen nucleophiles such as formamide and hydrazine hydrate and also the reaction of the isopropylquinazolinone <b>4</b> with hydrazonyl chloride have been shown to proceed with a high degree of regioselectivity at C(2). Spiro heterocycles have been found to play fundamental roles in biological processes and have exhibited diversified biological activity and pharmacological and therapeutical properties; thus reaction of acetohydrazides <b>10a–c</b> afforded the spiro compounds <b>11a–c</b>. The acetohydrazide derivative <b>7</b> reacted with carbon electrophiles such as acetylacetone, ethyl acetoacetate, acid chlorides, and benzaldehyde to give some interesting heterocyclic compounds <b>12–16</b>, respectively. The structures of all the synthesized compounds were inferred by infrared, <sup>1</sup>H NMR, and mass spectra as well as elemental analyses. The antimicrobial activities of some of the synthesized products were preliminarily evaluated.
DOI: 10.6084/m9.figshare.3409939.v2
title: Regioselectivity and regiospecificity of benzoxazinone (2-isopropyl-4<i>H</i>-3,1-benzoxazinone) derivatives toward nitrogen nucleophiles and evaluation of antimicrobial activity

description: A novel group of 6-iodoquinazolin-4(<i>3H</i>)-one derivatives was prepared. The reaction of the benzoxazinone <b>3</b> with various nitrogen nucleophiles such as formamide and hydrazine hydrate and also the reaction of the isopropylquinazolinone <b>4</b> with hydrazonyl chloride have been shown to proceed with a high degree of regioselectivity at C(2). Spiro heterocycles have been found to play fundamental roles in biological processes and have exhibited diversified biological activity and pharmacological and therapeutical properties; thus reaction of acetohydrazides <b>10a–c</b> afforded the spiro compounds <b>11a–c</b>. The acetohydrazide derivative <b>7</b> reacted with carbon electrophiles such as acetylacetone, ethyl acetoacetate, acid chlorides, and benzaldehyde to give some interesting heterocyclic compounds <b>12–16</b>, respectively. The structures of all the synthesized compounds were inferred by infrared, <sup>1</sup>H NMR, and mass spectra as well as elemental analyses. The antimicrobial activities of some of the synthesized products were preliminarily evaluated.
DOI: 10.6084/m9.figshare.3409939.v1
title: Regioselectivity and Regiospecificity of Benzoxazinone (2-Isopropyl4<i>H</i>-3,1-Benzoxazinone) Derivatives toward Nitrogen Nucleophiles and Evaluation of Antimicrobial Activity

description: A novel group of 6-iodoquinazolin-4(<i>3H</i>)-one derivatives was prepared. The reaction of the benzoxazinone <b>3</b> with various nitrogen nucleophiles such as formamide and hydrazine hydrate and also the reaction of the isopropylquinazolinone <b>4</b> with hydrazonyl chloride have been shown to proceed with a high degree of regioselective at C(2). Spiro heterocycles have been found to play fundamental roles in biological processes and have exhibited diversified biological activity and pharmacological and therapeutical properties, thus reaction of the acetohydrazide <b>10a-c</b> afforded the spiro compounds <b>11a-c</b>. The acetohydrazide derivative <b>7</b> reacted with carbon electrophiles such as acetylacetone, ethyl acetoacetate, acid chlorides and benzaldehyde to give some interesting heterocyclic compounds <b>12-16</b>, respectively. The structures of all the synthesized compounds were inferred by IR, <sup>1</sup>H-NMR and MS spectra as well as elemental analyses. The antimicrobial activities of some of the synthesized products were preliminarily evaluated.
DOI: 10.6084/m9.figshare.3409882
title: pyAFQ Stanford HARDI tractography and mapping

description: This tractography and registration mapping was created from the data that is in this PURL on the Stanford Digital Repository: https://searchworks.stanford.edu/view/yx282xq2090. <br>The data were processed using the pyAFQ software and Dipy, to create tensor-based tracts. These were down-sampled by a factor of 1000, and stored in the trk file.<br>The data were also registered to the MNI T2 template, using the SyN algorithm (Avants et al. 2008), implemented in Dipy. Both forward and backward transformation images were saved and are stored the nifti file.
DOI: 10.6084/m9.figshare.3409804
title: RRegrs study for Growth Yield

description: RRegrs study for Growth Yield for original and corrected/filterred datasets: inputs training and test files, R scripts to split the datasets, plot for outlier removal.
DOI: 10.6084/m9.figshare.3409804.v2
title: RRegrs study for Growth Yield

description: RRegrs study for Growth Yield for original and corrected/filterred datasets: inputs training and test files, R scripts to split the datasets, plot for outlier removal.
DOI: 10.6084/m9.figshare.3409804.v1
title: RRegrs study for Growth Yield

description: RRegrs study for Growth Yield for original and corrected/filterred datasets: inputs training and test files, R scripts to split the datasets, plot for outlier removal.
DOI: 10.6084/m9.figshare.3409744
title: Raw Data for Spring 2016 UCSD Replication Attempt on Vohs, Mead & Goode (2006, Experiment 1, Science, 314(5802), 1154-1156)

description: Dataset provided in both CSV and XLS format.<br> <br> Contains 24 fields X 180 records (subjects).<br> <br> Variables are:<br> <br> 1. Subject #<br> <br> 2. Condition (A = neutral priming; B = monopoly prime; C = money prime)<br> <br> 3. Total time in seconds (this is total time before subject sought help if they did seek help, 600 if they never sought help). For subjects in condition I and S, the value provided is the time it took them to contact with the experimenter.<br> 4. Outcome (H= asked for a hint; I = provided incorrect solution; S = solved puzzle correctly on their own; T = never asked for a hint and remained in room entire for 10 minutes). 5. – 24. PANAS responses
DOI: 10.6084/m9.figshare.3409744.v1
title: Raw Data for Spring 2016 UCSD Replication Attempt on Vohs, Mead & Goode (2006, Experiment 1, Science, 314(5802), 1154-1156)

description: Dataset provided in both CSV and XLS format.<br> <br> Contains 24 fields X 180 records (subjects).<br> <br> Variables are:<br> <br> 1. Subject #<br> <br> 2. Condition (A = neutral priming; B = monopoly prime; C = money prime)<br> <br> 3. Total time in seconds (this is total time before subject sought help if they did seek help, 600 if they never sought help). For subjects in condition I and S, the value provided is the time it took them to contact with the experimenter.<br> 4. Outcome (H= asked for a hint; I = provided incorrect solution; S = solved puzzle correctly on their own; T = never asked for a hint and remained in room entire for 10 minutes). 5. – 24. PANAS responses
DOI: 10.6084/m9.figshare.3409741
title: Growth Yield original datasets

description: Growth Yield original raw and normalized datasets
DOI: 10.6084/m9.figshare.3409741.v1
title: Growth Yield original datasets

description: Growth Yield original raw and normalized datasets
DOI: 10.6084/m9.figshare.3409678
title: Growth Yield ML models

description: Growth Yield Models ML models with STATISTICA and RRegrs
DOI: 10.6084/m9.figshare.3409678.v1
title: Growth Yield Models ML models

description: Growth Yield Models ML models with STATISTICA and RRegrs
DOI: 10.6084/m9.figshare.3409678.v3
title: Growth Yield ML models

description: Growth Yield Models ML models with STATISTICA and RRegrs
DOI: 10.6084/m9.figshare.3409678.v2
title: Growth Yield ML models

description: Growth Yield Models ML models with STATISTICA and RRegrs
DOI: 10.6084/m9.figshare.3409630
title: SupplDataFile2.zip

description: Supplementary Data File 2. Concatenated alignments of mt- and nuc-encoded genes used to estimate <i>d</i><sub>N</sub>, <i>d</i><sub>S</sub>, and <i>ω</i> values for each of the 15 examined taxonomic groups. In the zipped file there are three directories for each of the three gene sets analyzed for <i>d</i><sub>N</sub>, <i>d</i><sub>S</sub>, and <i>ω</i> values: mitochondrial-encoded OXPHOS genes, nuclear-encoded OXPHOS genes, and nuclear-encoded glycolysis genes. In each directory there are 15 alignment files in fasta format, one for each of the 15 taxonomic groups investigated. Each of these alignment files contains at least 2 species and concatenated alignments from several genes. See Havird and Sloan for further details.
DOI: 10.6084/m9.figshare.3409630.v2
title: SupplDataFile2.zip

description: Supplementary Data File 2. Concatenated alignments of mt- and nuc-encoded genes used to estimate <i>d</i><sub>N</sub>, <i>d</i><sub>S</sub>, and <i>ω</i> values for each of the 15 examined taxonomic groups. In the zipped file there are three directories for each of the three gene sets analyzed for <i>d</i><sub>N</sub>, <i>d</i><sub>S</sub>, and <i>ω</i> values: mitochondrial-encoded OXPHOS genes, nuclear-encoded OXPHOS genes, and nuclear-encoded glycolysis genes. In each directory there are 15 alignment files in fasta format, one for each of the 15 taxonomic groups investigated. Each of these alignment files contains at least 2 species and concatenated alignments from several genes. See Havird and Sloan for further details.