cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/pvdx3-rn598
title: CHMP1B tubes

description: tomography taken with a larger defocus of 4-6 um
description: <strong>Tilt Series Date:</strong> 2009-06-04</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> CHMP1B tubes</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: °, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-06-04-18/rawdata/</p>09jun04a_756d_029.mrc,  Tilt Series (Pixel Size 1.04 nm), 553.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/406re-h7f29
title: Caulobacter crescentus

description: Keywords: flagella
description: <strong>Tilt Series Date:</strong> 2005-11-11</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-11-11-5/3dimage_643/</p>cclcnov11_0min_05.rec,  Reconstruction (Pixel Size 0.0 nm), 64.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-11-11-5/3dimage_643/cclcnov11_0min_05.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nhn68-g1653
title: FtsZ-associated proteins

description: Raw data files of FtsZ-associated proteins
description: <strong>Tilt Series Date:</strong> 2008-10-29</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-62.0°, 62.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-29-16/rawdata/</p>08oct29a_bx402_016.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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DOI: 10.22002/1cc53-tpe93
title: intact HIV VLP -- 8.2 vector

description: Raw data files of intact HIV VLP -- 8.2 vector
description: <strong>Tilt Series Date:</strong> 2008-04-17</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> mature HIV-1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-56.0°, 62.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 9.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-04-17-3/rawdata/</p>080418_8d2viron_sam2_sq01_h04b_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 570.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ekhsa-qyc86
title: in vitro assembled CA-NC cone

description: data collected by Leginon with large defocus (15 um)
description: <strong>Tilt Series Date:</strong> 2008-07-01</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-07-01-6/rawdata/</p>08jul01a_leginon08.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.s9pz5y
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Amaranthus retroflexus"
 ]
}

 The dataset includes 80 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002453-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/h33nf-s2c26
title: archaeon

description: Raw data files of archaeon
description: <strong>Tilt Series Date:</strong> 2006-05-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: 11.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-05-30-5/rawdata/</p>Archae060530_sam4_sq14_h02.mrc,  Tilt Series (Pixel Size 0.66 nm), 352.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4m8ar-hm657
title: ZapA o/e

description: Raw data files of ZapA o/e
description: <strong>Tilt Series Date:</strong> 2007-11-04</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-11-04-4/rawdata/</p>ZapAoe11040734k003.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v2cqm-wz807
title: in vitro assembled CA-NC cone

description: Raw data files of in vitro assembled CA-NC cone
description: <strong>Tilt Series Date:</strong> 2008-06-30</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-30-2/rawdata/</p>cone080630sam1sq01h01_41k.mrc,  Tilt Series (Pixel Size 0.52 nm), 604.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ngf5p-3j897
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2005-10-06</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-10-06-7/3dimage_609/</p>cc1732i.rec,  Reconstruction (Pixel Size 0.0 nm), 178.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-10-06-7/3dimage_609/cc1732i.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2bq8p-k4578
title: FzlA oe 14hr

description: Raw data files of FzlA oe 14hr
description: <strong>Tilt Series Date:</strong> 2008-10-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (63.0°, -63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-21-9/rawdata/</p>08oct21a_bx799_1_011.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/achra-d8a38
title: FtsZ-associated proteins

description: Raw data files of FtsZ-associated proteins
description: <strong>Tilt Series Date:</strong> 2008-10-29</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-62.0°, 62.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-29-12/rawdata/</p>08oct29a_bx402_012.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/akygt-f4n70
title: YB1726

description: Raw data files of YB1726
description: <strong>Tilt Series Date:</strong> 2005-10-06</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-10-06-14/3dimage_631/</p>cc1726i_2.rec,  Reconstruction (Pixel Size 0.0 nm), 149.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nk590-75268
title: in vitro assembled CA-NC cones

description: Raw data files of in vitro assembled CA-NC cones
description: <strong>Tilt Series Date:</strong> 2008-06-11</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-38.0°, 66.0°), step: 2°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-06-11-10/rawdata/</p>samp3_sq18_h05_41k01.mrc,  Tilt Series (Pixel Size 0.52 nm), 578.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qphy9-sfc88
title: in vitro assembled CA-NC cone

description: data collected by Leginon with large defocus (15 um)
description: <strong>Tilt Series Date:</strong> 2008-07-01</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> in vitro assembled HIV CA-NC cones</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-07-01-2/rawdata/</p>08jul01a_leginon03.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zd3gb-wfn36
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2013-11-27</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2013-11-27-10/rawdata/</p>2013nov27_L002_4_uv230minpseudovlp0006.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dnw0n-xqn56
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2016-05-24</p>
<strong>Data Taken By:</strong> Qing Yao</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2016-05-24-32/rawdata/</p>Tomography_05_010006.mrc,  Tilt Series (Pixel Size 0.41 nm), 861.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rwrm0-b9b73
title: Mycobacter smegmatis pneumonia

description: type VII secretion system in Mycobacterium smegmatis Wild type Mycobacterium smegmatis strain is expected to have T7SS, while mutant to be defective.KP48
description: <strong>Tilt Series Date:</strong> 2013-06-10</p>
<strong>Data Taken By:</strong> Alasdair McDowall</p>
<strong>Species / Specimen:</strong> Mycobacterium smegmatis</p>
<strong>Strain:</strong> 3877</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Koushik Paul /  Eric BrownGenentech, Inc.1 DNA WaySouth San Francisco, CA 94080(650) 225-6248Fax: (650) 225-1107</p>
<strong>Purification / Growth Conditions / Treatment:</strong> KP48 M. smegmatis Δ3877 (ΔeccD1) 7H9 media </p>
<strong>Sample Preparation:</strong> 3ul + 10nm AuR2/2 quantifoils 4.5offset 1 blot 2s 1s drain</p>
  amw2013-06-10-4_slicer4948.jpg: REZ amw2013-06-10-4_slicer4949.jpg: Unknown amw2013-06-10-4_slicer4950.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-06-10-4/rawdata/</p>kp48_10002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        kp48_10002_full.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c4xt6-5sp53
title: Legionella_delta-lspHIJK

description: Legionella pneumophila Philadelphia-1_Lp02. Lacks all the T2SS minor pseudopilins.
description: <strong>Tilt Series Date:</strong> 2019-05-16</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-45.0°, 45.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent by Nicholas Cianciotto, Northwestern University. Data collected and processed by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for this strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-16-44/rawdata/</p>DG7_20190516_tomo0022.mrc,  Tilt Series (Pixel Size 0.26 nm), 882.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        DG7_20190516_tomo0022_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k9c42-tmy25
title: Legionella_JV9246

description: Legionella_JV9246: DotF-sfGFP fusion to the wild-type gene on the chromosome (thyA) and ΔdotO.
description: <strong>Tilt Series Date:</strong> 2019-05-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected by Debnath Ghosal and Yuxi Liu.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-90/rawdata/</p>JV9246_area1_tomo0090.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.2 GB  
        
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        JV9246_area1_tomo0090_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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