cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7739132.v1
title: The secretome of honeybee-specific lactic acid bacteria inhibits <i>Paenibacillus larvae</i> growth

description: American Foulbrood (AFB) is a particularly pernicious bacterial disease of honeybees due to the extreme persistence of endospores of the causative agent <i>Paenibacillus larvae</i>. These spores are resistant to harsh environmental conditions, unaffected by antimicrobial agents and can remain viable for decades. The germination of the endospore in the larval midgut is the crucial first step leading to infection, followed by vegetative growth, tissue invasion and disease, culminating in spore formation when the host´s nutrients have been exhausted. Therefore, inhibiting spore germination or impeding early vegetative growth would be a highly effective strategy for limiting the impact of AFB. We previously showed that honeybee-specific lactic acid bacteria (hbs–LAB) had a major inhibitory effect on <i>P. larvae</i> both in culture and in larval bioassays. The present study documents the progress towards characterization of compounds, processes and interactions between <i>P. larvae</i> and the hbs–LAB responsible for this inhibitory effect. Firstly, we used an agar diffusion assay and larval infection bioassay to show that most, if not all, of the inhibitory effect was associated with the extracellular fraction (secretome). Secondly, we employed a turbidimetric growth assay to demonstrate that the hbs–LAB secretome strongly inhibited <i>P. larvae</i> vegetative growth, however, probably not by reducing spore germination. The inhibition was similarly effective against both major <i>P. larvae</i> genotypes (ERIC-I and II) in all experiments. The implications of our results for characterization of the secretome and for the management and treatment of AFB and <i>P. larvae</i> are further discussed.
DOI: 10.7284/122228
title: Multibeam Echosounder data collected during research cruise AR1-06 using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7739114.v1
title: High-Pressure Modulated Structures in Beryllium Chalcogenides

description: structure information files for predicted high pressure structures of beryllium chalcogenides
DOI: 10.7284/122225
title: Radiometer data collected during research cruise AR1-06 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122226
title: Radiometer data collected during research cruise AR1-06 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122224
title: Singlebeam Echosounder data collected during research cruise AR1-06 using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122219
title: Speedlog data collected during research cruise AR1-06 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7739051
title: Decay class specific dead wood density data for Picea abies in northern Europe (Aakala 2010)

description: Data and data description on dead wood density in decay classes for Picea abies in northern Europe, as reported in Aakala T. 2010. Coarse woody debris in late-successional Picea abies forests in northern Europe: Variability in quantities and models of decay class dynamics. Forest Ecology and Management 260:770-779. DOI:10.1016/j.foreco.2010.05.035
DOI: 10.6084/m9.figshare.7739054
title: The Jurassic Yeba Formation in the Gangdese arc of S. Tibet: implications for upper plate extension in the Lhasa terrane

description: The formation of the Jurassic Xiongcun porphyry copper deposit, within the Gangdese magmatic belt of southern Tibet, took place coincident with subduction of the Neotethyan oceanic lithosphere. Although the Yeba Formation (coeval and co-magmatic intrusions and volcanic rocks) in the eastern Gangdese magmatic belt formed at the same time as the Xiongcun deposit, the Yeba Formation is devoid of subduction-related porphyry Cu deposits. Here, we report detrital zircon U–Pb ages for sedimentary rocks of the Yeba and Bima Formations along with a summary of all published whole-rock geochemical data and zircon epsilon Hf isotopes for the volcanic rocks in the Yeba Formation. We use these data to re-evaluate the petrogenesis, magmatic source, and tectonic setting of the volcanic rocks. Detrital zircon ages from the sedimentary rocks reveal that the volcanic rocks of the Yeba and Bima Formations are the main source for their sedimentary interlayers. In addition, the Yeba sedimentary layers contain inherited zircons sourced from older country rocks whereas the Bima Formation is devoid of ancient zircons. Geochemically, the Yeba volcanic rocks resemble a bimodal volcanic suite. Geochemical data reveal that the Yeba volcanic rocks formed in a continental arc setting, while the mafic ones were derived from the partial melting of the mantle wedge above the subducting slab rather than from the melting of the descending oceanic slab. In addition, the mafic ensemble formed in a back-arc setting, indicative of subduction-related extension in the Lhasa terrane. In contrast, the felsic ensemble may originate from the melting of basaltic lower crust. Thus, the magma source and tectonic setting for the Yeba Formation are distinct from typical subduction-related Cu-hosted porphyry and volcanic rocks in a compressional setting.
DOI: 10.6084/m9.figshare.7739051.v1
title: Decay class specific dead wood density data for Picea abies in northern Europe (Aakala 2010)

description: Data and data description on dead wood density in decay classes for Picea abies in northern Europe, as reported in Aakala T. 2010. Coarse woody debris in late-successional Picea abies forests in northern Europe: Variability in quantities and models of decay class dynamics. Forest Ecology and Management 260:770-779. DOI:10.1016/j.foreco.2010.05.035
DOI: 10.7284/122130
title: Splitbeam Echosounder data collected during research cruise AR1-06 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7739054.v1
title: The Jurassic Yeba Formation in the Gangdese arc of S. Tibet: implications for upper plate extension in the Lhasa terrane

description: The formation of the Jurassic Xiongcun porphyry copper deposit, within the Gangdese magmatic belt of southern Tibet, took place coincident with subduction of the Neotethyan oceanic lithosphere. Although the Yeba Formation (coeval and co-magmatic intrusions and volcanic rocks) in the eastern Gangdese magmatic belt formed at the same time as the Xiongcun deposit, the Yeba Formation is devoid of subduction-related porphyry Cu deposits. Here, we report detrital zircon U–Pb ages for sedimentary rocks of the Yeba and Bima Formations along with a summary of all published whole-rock geochemical data and zircon epsilon Hf isotopes for the volcanic rocks in the Yeba Formation. We use these data to re-evaluate the petrogenesis, magmatic source, and tectonic setting of the volcanic rocks. Detrital zircon ages from the sedimentary rocks reveal that the volcanic rocks of the Yeba and Bima Formations are the main source for their sedimentary interlayers. In addition, the Yeba sedimentary layers contain inherited zircons sourced from older country rocks whereas the Bima Formation is devoid of ancient zircons. Geochemically, the Yeba volcanic rocks resemble a bimodal volcanic suite. Geochemical data reveal that the Yeba volcanic rocks formed in a continental arc setting, while the mafic ones were derived from the partial melting of the mantle wedge above the subducting slab rather than from the melting of the descending oceanic slab. In addition, the mafic ensemble formed in a back-arc setting, indicative of subduction-related extension in the Lhasa terrane. In contrast, the felsic ensemble may originate from the melting of basaltic lower crust. Thus, the magma source and tectonic setting for the Yeba Formation are distinct from typical subduction-related Cu-hosted porphyry and volcanic rocks in a compressional setting.
DOI: 10.7284/122223
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR1-06 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122218
title: Water Temperature data collected during research cruise AR1-06 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122217
title: TSG (Thermosalinograph) data collected during research cruise AR1-06 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122233
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR1-07 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122185
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR1-07 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122232
title: Gyrocompass data collected during research cruise AR1-07 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122238
title: Multibeam Echosounder data collected during research cruise AR1-07 using a Kongsberg EM122 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738973
title: SCD1 methylation in subcutaneous adipose tissue associated with menopausal age

description: <b>Objective:</b> This study was designed to investigate associations between menopausal age and the DNA methylation levels of stearoyl-coenzyme A desaturase 1 (SCD1, selected by the Illumina Human Methylation 450 K Bead Chip) and explore the changes in mRNA levels of SCD1 and DNA methyltransferases (DNMTs) in response to estrogen replacement therapy (ERT). <b>Methods:</b> In the human experiment, we performed subcutaneous adipose tissue DNA extraction on 85 menopausal women. Methylation of SCD1 was measured by MethyLight polymerase chain reaction. In the rat experiment, we established models of menopause (ovariectomy group) and ERT (ovariectomy + 17β-estradiol group). The mRNA levels of SCD1, DNMT1, DNMT3A, and DNMT3B were determined. <b>Results:</b> The results showed that DNA methylation of SCD1 was inversely correlated with menopausal age (<i>r</i> = 0.370, <i>P</i> P P P <b>Conclusion:</b> Methylation levels of SCD1 were significantly associated with menopausal age. DNMT3A and DNMT3B may be involved in the methylation of SCD1.
DOI: 10.7284/122239
title: Multibeam Echosounder data collected during research cruise AR1-07 using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738946
title: Acute hyperammonemia in children under deferasirox treatment: cutting the Gordian knot

description: Acute hyperammonemia in children under deferasirox treatment: cutting the Gordian knot
DOI: 10.6084/m9.figshare.7738949
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Manual installation experiments

description: Data manually collected from a number of users on the installability of published genomics tools.<br>For more information:https://github.com/smangul1/good.software
DOI: 10.6084/m9.figshare.7738973.v1
title: SCD1 methylation in subcutaneous adipose tissue associated with menopausal age

description: <b>Objective:</b> This study was designed to investigate associations between menopausal age and the DNA methylation levels of stearoyl-coenzyme A desaturase 1 (SCD1, selected by the Illumina Human Methylation 450 K Bead Chip) and explore the changes in mRNA levels of SCD1 and DNA methyltransferases (DNMTs) in response to estrogen replacement therapy (ERT). <b>Methods:</b> In the human experiment, we performed subcutaneous adipose tissue DNA extraction on 85 menopausal women. Methylation of SCD1 was measured by MethyLight polymerase chain reaction. In the rat experiment, we established models of menopause (ovariectomy group) and ERT (ovariectomy + 17β-estradiol group). The mRNA levels of SCD1, DNMT1, DNMT3A, and DNMT3B were determined. <b>Results:</b> The results showed that DNA methylation of SCD1 was inversely correlated with menopausal age (<i>r</i> = 0.370, <i>P</i> P P P <b>Conclusion:</b> Methylation levels of SCD1 were significantly associated with menopausal age. DNMT3A and DNMT3B may be involved in the methylation of SCD1.
DOI: 10.6084/m9.figshare.7738949.v1
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Manual installation experiments

description: Data manually collected from a number of users on the installability of published genomics tools.<br>For more information:https://github.com/smangul1/good.software
DOI: 10.7284/122236
title: Radiometer data collected during research cruise AR1-07 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738940
title: First report of sesame spot caused by <i>Xanthomonas campestris</i> pv. <i>sesami</i> in Sinaloa, Mexico

description: A new disease on sesame (<i>Sesamum indicum</i> L.) plants was observed in the municipalities of Ahome, El Fuerte and Choix in the state of Sinaloa, Mexico during the summer of 2014. The disease occurred during the rainy season (August–September) when temperatures ranged between 27–40°C. The symptoms were lesions on leaves, petioles, stems and capsules. Up to 100% incidence was observed, and up to 50% of the foliage exhibited symptoms under field conditions. Isolations were made from leaves and a bacterium was consistently recovered on nutrient agar medium. Based on physiological and biochemical tests, as well as sequences from three different DNA regions, the bacterium was identified as <i>Xanthomonas campestris</i> pv. <i>sesami</i>. Pathogenicity tests confirmed the ability of select isolates to cause symptoms similar to those observed under field conditions.
DOI: 10.6084/m9.figshare.7738946.v1
title: Acute hyperammonemia in children under deferasirox treatment: cutting the Gordian knot

description: Acute hyperammonemia in children under deferasirox treatment: cutting the Gordian knot
DOI: 10.6084/m9.figshare.7738940.v1
title: First report of sesame spot caused by <i>Xanthomonas campestris</i> pv. <i>sesami</i> in Sinaloa, Mexico

description: A new disease on sesame (<i>Sesamum indicum</i> L.) plants was observed in the municipalities of Ahome, El Fuerte and Choix in the state of Sinaloa, Mexico during the summer of 2014. The disease occurred during the rainy season (August–September) when temperatures ranged between 27–40°C. The symptoms were lesions on leaves, petioles, stems and capsules. Up to 100% incidence was observed, and up to 50% of the foliage exhibited symptoms under field conditions. Isolations were made from leaves and a bacterium was consistently recovered on nutrient agar medium. Based on physiological and biochemical tests, as well as sequences from three different DNA regions, the bacterium was identified as <i>Xanthomonas campestris</i> pv. <i>sesami</i>. Pathogenicity tests confirmed the ability of select isolates to cause symptoms similar to those observed under field conditions.
DOI: 10.7284/122237
title: Radiometer data collected during research cruise AR1-07 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738925
title: Snakebites and climate change in California, 1997–2017

description: <b>Background:</b> Climate change effect on flora and fauna has been scientifically documented, but the effect on North American venomous snakebites is unknown. The objectives were to examine Californian snakebite incidence and correlate with weather patterns and climate changes. <b>Methods:</b> A retrospective analysis of snakebites reported to the Californian Poison Control System from 1 September 1997 to 30 September 2017. Venomous snakebite reports were aggregated by caller zip code, and correlated per county with weather data, air temperature, precipitation, population data, eco-regions, and land characteristics. Time series decomposition by seasonality and trend, regression, and autocorrelation were used to assess association between climate variables and incidence. <b>Results:</b> There were 5365 reported venomous snakebites during the study period, with a median age of 37 years (22–51) with 76% male (<i>p</i> p = .65). The snakebite incidence per million people rose after a period of no drought and declined during drought (<i>r</i> = −0.41, <i>p</i> ≪ .01). Snakebite incidence decreased by 6-month prior drought (−3.8% for each 10% increase in drought), and increased by 18-month prior precipitation (+3.9% for each 10% increase in precipitation). <b>Conclusions:</b> Patterns of precipitation and drought had a significant and predictive effect on snakebites in California over a 20-year period. Snakebite incidence decreased following drought, and increased after precipitation.
DOI: 10.6084/m9.figshare.7738925.v1
title: Snakebites and climate change in California, 1997–2017

description: <b>Background:</b> Climate change effect on flora and fauna has been scientifically documented, but the effect on North American venomous snakebites is unknown. The objectives were to examine Californian snakebite incidence and correlate with weather patterns and climate changes. <b>Methods:</b> A retrospective analysis of snakebites reported to the Californian Poison Control System from 1 September 1997 to 30 September 2017. Venomous snakebite reports were aggregated by caller zip code, and correlated per county with weather data, air temperature, precipitation, population data, eco-regions, and land characteristics. Time series decomposition by seasonality and trend, regression, and autocorrelation were used to assess association between climate variables and incidence. <b>Results:</b> There were 5365 reported venomous snakebites during the study period, with a median age of 37 years (22–51) with 76% male (<i>p</i> p = .65). The snakebite incidence per million people rose after a period of no drought and declined during drought (<i>r</i> = −0.41, <i>p</i> ≪ .01). Snakebite incidence decreased by 6-month prior drought (−3.8% for each 10% increase in drought), and increased by 18-month prior precipitation (+3.9% for each 10% increase in precipitation). <b>Conclusions:</b> Patterns of precipitation and drought had a significant and predictive effect on snakebites in California over a 20-year period. Snakebite incidence decreased following drought, and increased after precipitation.
DOI: 10.7284/122235
title: Singlebeam Echosounder data collected during research cruise AR1-07 using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122231
title: Speedlog data collected during research cruise AR1-07 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738901
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Parsed http link status

description: Using a web scrapper, we checked the status of http links detected from scientific papers.<br>The data schema is detailed below:* Type - In which part of the manusript the link was found.* Journal - Title of the journal where the paper was published.* Id - Pubmed's primary identifier for the paper.* Year - When the paper was published.* link - URL parsed from the manuscript text.* code - HTTP code returned when trying to access the webpage.* status - Parsed HTTP code.<br>For status, we followed the convention below.* -1 = Access timed out.* 1 = Accessed succesfully.* 3 = Link was redirected, but still accessible.* 4 = Error, content not found.
DOI: 10.7284/122131
title: Splitbeam Echosounder data collected during research cruise AR1-07 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7738889
title: The increasing dominance of science in the economy: which nations are successful?

description: The patents and papers as the data of the study<br>
DOI: 10.6084/m9.figshare.7738889.v1
title: The increasing dominance of science in the economy: which nations are successful?

description: The patents and papers as the data of the study<br>
DOI: 10.7284/122234
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR1-07 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7737785
title: Landsat based peak NDVI image Year 1999 Tile 10

description: Landsat based peak NDVI image Year 1999 Tile 10
DOI: 10.6084/m9.figshare.7737782
title: Landsat based peak NDVI image Year 1991 Tile 10

description: Landsat based peak NDVI image Year 1991 Tile 10
DOI: 10.7284/122230
title: Water Temperature data collected during research cruise AR1-07 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7737779
title: Landsat based peak NDVI image Year 1992 Tile 10

description: Landsat based peak NDVI image Year 1992 Tile 10
DOI: 10.6084/m9.figshare.7737785.v2
title: Landsat based peak NDVI image Year 1999 Tile 10

description: Landsat based peak NDVI image Year 1999 Tile 10
DOI: 10.6084/m9.figshare.7737782.v2
title: Landsat based peak NDVI image Year 1991 Tile 10

description: Landsat based peak NDVI image Year 1991 Tile 10
DOI: 10.6084/m9.figshare.7737785.v1
title: Landsat based peak NDVI image Year 1999 Tile 10

description: Landsat based peak NDVI image Year 1999 Tile 10
DOI: 10.7284/122229
title: TSG (Thermosalinograph) data collected during research cruise AR1-07 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7737776
title: Landsat based peak NDVI image Year 1993 Tile 10

description: Landsat based peak NDVI image Year 1993 Tile 10
DOI: 10.6084/m9.figshare.7737779.v2
title: Landsat based peak NDVI image Year 1992 Tile 10

description: Landsat based peak NDVI image Year 1992 Tile 10
DOI: 10.6084/m9.figshare.7737770
title: Landsat based peak NDVI image Year 2018 Tile 9

description: Landsat based peak NDVI image Year 2018 Tile 9
DOI: 10.6084/m9.figshare.7737779.v1
title: Landsat based peak NDVI image Year 1992 Tile 10

description: Landsat based peak NDVI image Year 1992 Tile 10
DOI: 10.6084/m9.figshare.7737782.v1
title: Landsat based peak NDVI image Year 1991 Tile 10

description: Landsat based peak NDVI image Year 1991 Tile 10