cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3790939_d9
title: Additional file 2: of In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

description: The genotyping data and SNP quality parameters for the whole set of accessions. (XLSX 5705 kb)
DOI: 10.6084/m9.figshare.c.3790975_d8.v1
title: Additional file 4: Table S3. of Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)

description: Identity and similarity between the different O. sativa EUL domains (% identity/% similarity). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3790993_d1.v1
title: Additional file 1: Table S1. of Genome-wide DNA methylation profiling integrated with gene expression profiling identifies PAX9 as a novel prognostic marker in chronic lymphocytic leukemia

description: List of primers used in RQ-PCR studies. Table S2A. List of probes hypermethylated in CLL in comparison toÂ CD19+ cells from healthy individuals. Table S2B. List of probes hypomethylated in CLL in comparison to normal CD19+ cells. Table S3A. List of probes hypermethylated in unmutated in comparison to mutated CLL. Table S3B. List of probes hypomethylated in unmutated CLL in comparison to mutated CLL. Table S4. List of genes having negative correlation for methylation and gene expression in CLL as compared to normal 19+ cells. Table S5. List of genes having negative correlation for methylation and gene expression in unmutated CLL as compared to mutated CLL. (XLS 1339 kb)
DOI: 10.6084/m9.figshare.c.3790975_d8
title: Additional file 4: Table S3. of Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)

description: Identity and similarity between the different O. sativa EUL domains (% identity/% similarity). (XLSX 10 kb)
DOI: 10.15468/dl.jaam3r
title: Occurrence Download

description: A dataset containing 13623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bagre marinus (Mitchill, 1815)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 13623 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038936-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3790993_d1
title: Additional file 1: Table S1. of Genome-wide DNA methylation profiling integrated with gene expression profiling identifies PAX9 as a novel prognostic marker in chronic lymphocytic leukemia

description: List of primers used in RQ-PCR studies. Table S2A. List of probes hypermethylated in CLL in comparison toÂ CD19+ cells from healthy individuals. Table S2B. List of probes hypomethylated in CLL in comparison to normal CD19+ cells. Table S3A. List of probes hypermethylated in unmutated in comparison to mutated CLL. Table S3B. List of probes hypomethylated in unmutated CLL in comparison to mutated CLL. Table S4. List of genes having negative correlation for methylation and gene expression in CLL as compared to normal 19+ cells. Table S5. List of genes having negative correlation for methylation and gene expression in unmutated CLL as compared to mutated CLL. (XLS 1339 kb)
DOI: 10.6084/m9.figshare.c.3790975_d11
title: Additional file 7: Table S4. of Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)

description: Cis-regulatory elements in OsEUL promoter sequences. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3790975_d11.v1
title: Additional file 7: Table S4. of Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)

description: Cis-regulatory elements in OsEUL promoter sequences. (XLSX 50 kb)
DOI: 10.17028/rd.lboro.28052882
title: Qualitative analysis of conversations between AI chatbots and (fictitious) adolescent profiles: Qualitative Transcripts (Raw Data)

description: Ten fictitious adolescent personas and scripts were created to facilitate conversations with ChatGPT and Claude.AI to explore how chatbots would respond to eating, weight, or appearance-related queries from adolescents. This study was preregistered on the Open Science Framework (https://osf.io/cy8nr). Please see the manuscript titled “<i>How do Artificial Intelligence chatbots respond to questions from adolescent personas about their eating, body weight, or appearance</i>?” for further information (currently under review), or contact Dr Florence Sheen (f.sheen@lboro.ac.uk).
DOI: 10.6084/m9.figshare.c.3790975_d13.v1
title: Additional file 9: Table S5. of Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)

description: GO enrichment analysis on EUL regulons. (XLSX 163 kb)
DOI: 10.60656/b4d7aacbaa6245d8
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 6 other sites on 12 Jan 2023
DOI: 10.6084/m9.figshare.c.3791023_d3
title: Additional file 3: of Distinct genetic differentiation and species diversification within two marine nematodes with different habitat preference in Antarctic sediments

description: Alignment of 18S rDNA sequences used in ITS primer development (fasta format). (TXT 104 kb)
DOI: 10.6084/m9.figshare.c.3791071_d1.v1
title: Additional file 10: Table S7. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Location of wheat bHLH on chromosome. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d8.v1
title: Additional file 17: Table S8. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: Genes in scale-biter intersection set at 48 hpf. This is a comma separated table of the genes in the 48 hpf scale-biter intersection set. Given are edgeR results for each pairwise comparison. Columns indicating whether a gene is included in the intersection set at a threshold of 1.5 or 2 fold are provided. (CSV 143Â kb)
DOI: 10.6084/m9.figshare.c.3791023_d4.v1
title: Additional file 4: of Distinct genetic differentiation and species diversification within two marine nematodes with different habitat preference in Antarctic sediments

description: Alignment of 28S rDNA sequences used in ITS primer development (fasta format). (TXT 31 kb)
DOI: 10.6084/m9.figshare.c.3791050_d8
title: Additional file 17: Table S8. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: Genes in scale-biter intersection set at 48 hpf. This is a comma separated table of the genes in the 48 hpf scale-biter intersection set. Given are edgeR results for each pairwise comparison. Columns indicating whether a gene is included in the intersection set at a threshold of 1.5 or 2 fold are provided. (CSV 143Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d1
title: Additional file 10: Table S7. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Location of wheat bHLH on chromosome. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d2.v1
title: Additional file 11: Table S8. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Distribution of the identified bHLH TF genes on wheat chromosomes. (XLSX 15Â kb)
DOI: 10.15468/dl.sd63a3
title: Occurrence Download

description: A dataset containing 3681 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ICM-CSIC: MINKA_BioPlatgestMet observatorio de ciencia ciudadana"
 ]
}

 The dataset includes 3681 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038937-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9kwwq7
title: Occurrence Download

description: A dataset containing 3681 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ICM-CSIC: MINKA_BioPlatgestMet observatorio de ciencia ciudadana"
 ]
}

 The dataset includes 3681 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038938-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3791071_d16.v1
title: Additional file 24: Table S12. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The homeologous gene of bHLH in wheat. The wbHLH TFs that lost homologous genes on one of A, B or D genome marked with orange background and lost homologous genes on two genomes marked with green background. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d17.v1
title: Additional file 2: Table S2. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: RNA-seq information of different tissues or organs at different growth period. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d20
title: Additional file 28: Table S19. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: WebGestalt results for durophage intersection set. This is an excel table of providing WebGestalt overrepresentation enrichment analysis results for each of the 4 durophage intersection sets. Human symbols were used for analysis and genes without orthology assignment were excluded. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d16
title: Additional file 24: Table S12. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The homeologous gene of bHLH in wheat. The wbHLH TFs that lost homologous genes on one of A, B or D genome marked with orange background and lost homologous genes on two genomes marked with green background. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d21.v1
title: Additional file 29: Table S20. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: DAVID results for scale-biter intersection set. This is an excel table of providing DAVID overrepresentation enrichment analysis results for each of the 4 scale-biter intersection sets. ZFIN ids were used for analysis and genes without orthology assignment were excluded. (XLS 164Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d17
title: Additional file 2: Table S2. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: RNA-seq information of different tissues or organs at different growth period. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d18.v1
title: Additional file 3: Table S3. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The gene expression levels for wheat bHLH transcription factor family at different growth periods in different tissues and organs. (XLSX 197Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d21
title: Additional file 29: Table S20. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: DAVID results for scale-biter intersection set. This is an excel table of providing DAVID overrepresentation enrichment analysis results for each of the 4 scale-biter intersection sets. ZFIN ids were used for analysis and genes without orthology assignment were excluded. (XLS 164Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d18
title: Additional file 3: Table S3. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The gene expression levels for wheat bHLH transcription factor family at different growth periods in different tissues and organs. (XLSX 197Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d19.v1
title: Additional file 4: Table S4. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The specific primers of bHLH gene sequences in wheat. (XLSX 118Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d19
title: Additional file 4: Table S4. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: The specific primers of bHLH gene sequences in wheat. (XLSX 118Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d20.v1
title: Additional file 5: Table S5. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Two hundred twenty-five bHLH transcription factor nucleotide sequence of wheat. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d23.v1
title: Additional file 30: Table S21. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: DAVID results for durophage intersection set. This is an excel table of providing DAVID overrepresentation enrichment analysis results for each of the 4 durophage intersection sets. ZFIN ids were used for analysis and genes without orthology assignment were excluded. (XLS 90Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d24.v1
title: Additional file 31: Table S22. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: edgeR results table for identification of DE genes. This is a tab delimited table of the results from pair-wise comparisons among taxa at each stage to test for differential expression of genes using edgeR. GLM models were built for each stage and TMM normalization was calculated and applied at each stage. Genes filtered in a given stage are represented by NA. (GZ 10772Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d20
title: Additional file 5: Table S5. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Two hundred twenty-five bHLH transcription factor nucleotide sequence of wheat. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d23
title: Additional file 30: Table S21. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: DAVID results for durophage intersection set. This is an excel table of providing DAVID overrepresentation enrichment analysis results for each of the 4 durophage intersection sets. ZFIN ids were used for analysis and genes without orthology assignment were excluded. (XLS 90Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d21.v1
title: Additional file 6: Table S6. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Two hundred twenty-five bHLH transcription factor protein sequence of wheat. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d21
title: Additional file 6: Table S6. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Two hundred twenty-five bHLH transcription factor protein sequence of wheat. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3791131_d6.v1
title: Additional file 15: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: The set of 216 genes in the hub module constructed from the top 5% of the most connected genes in the petal-constructed gene network. Column headings are the same as in previous additional files (XLSX 76Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d5
title: Additional file 14: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Network statistics for the petal analysis on the filtered set of 15,092 genes. V1 ID is as in Additional file 3. The table includes all genes of the network model based on a Spearman correlation threshold of 0.703. Each geneâ  s cluster coefficient (localCC) and connectivity degree (k) are included (XLSX 423Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d6
title: Additional file 15: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: The set of 216 genes in the hub module constructed from the top 5% of the most connected genes in the petal-constructed gene network. Column headings are the same as in previous additional files (XLSX 76Â kb).
DOI: 10.6084/m9.figshare.c.3791155_d1.v1
title: Additional file 1: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: All informative microsatellite markers and associated data. In total 116 informative markers were developed for Q. rubra. These include 37 gSSRs, 38 EST-SSRs from Q. rubra, 1 C. mollissima EST-SSR and 40 Q. robur EST-SSRs. The table shows the marker name, the corresponding sequence accession numbers from NCBI, forward and reverse primers used for amplification and base pair sizes in Q. rubra mapping parents. (XLSX 78Â kb)
DOI: 10.15468/dl.xs2ec2
title: Occurrence Download

description: A dataset containing 19081 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bairdiella chrysoura (Lacepède, 1802)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 19081 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038939-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3791155_d1
title: Additional file 1: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: All informative microsatellite markers and associated data. In total 116 informative markers were developed for Q. rubra. These include 37 gSSRs, 38 EST-SSRs from Q. rubra, 1 C. mollissima EST-SSR and 40 Q. robur EST-SSRs. The table shows the marker name, the corresponding sequence accession numbers from NCBI, forward and reverse primers used for amplification and base pair sizes in Q. rubra mapping parents. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.c.3791158_d1.v1
title: Additional file 1: Table S1â  S4. of Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities

description: Community composition definitions. (ZIP 11Â kb)
DOI: 10.6084/m9.figshare.c.3791155_d2.v1
title: Additional file 2: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: Performance of SNP variant callers with two methods of de novo reference construction. Tabular data shows how the number of SNP markers generated by SAMtools and HaplotypeCaller changed after elimination of the SNPs with 30% or more missing genotypes for each of the three marker categories possible with SNPs and informative for mapping in F1 of outcrossing parents. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3791131_d8.v1
title: Additional file 1: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Read counts uniquely mapped to the PN40024 grape genome (XLSX 12905Â kb).
DOI: 10.6084/m9.figshare.c.3791155_d2
title: Additional file 2: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: Performance of SNP variant callers with two methods of de novo reference construction. Tabular data shows how the number of SNP markers generated by SAMtools and HaplotypeCaller changed after elimination of the SNPs with 30% or more missing genotypes for each of the three marker categories possible with SNPs and informative for mapping in F1 of outcrossing parents. (XLSX 9Â kb)
DOI: 10.5281/zenodo.14513496
title: Gross-Kreutz Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3791158_d1
title: Additional file 1: Table S1â  S4. of Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities

description: Community composition definitions. (ZIP 11Â kb)
DOI: 10.6084/m9.figshare.c.3791155_d3.v1
title: Additional file 3: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: Q. rubra mapped markers and associated data. The table shows all of the mapped framework and SNP markers, the cM distances between them, marker category, position on the Q. rubra linkage group, the sequence in which the marker occurs and the genotypes for the 217 full-sib progeny used for mapping. (XLSX 890Â kb)
DOI: 10.60656/aa0257b58fcc4656
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 6 other sites on 13 Jan 2023
DOI: 10.6084/m9.figshare.c.3791131_d8
title: Additional file 1: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Read counts uniquely mapped to the PN40024 grape genome (XLSX 12905Â kb).
DOI: 10.6084/m9.figshare.c.3791188_d1.v1
title: Additional file 1: of Health professionalsâ   job satisfaction and associated factors at public health centers in West Ethiopia

description: (SAV 55 kb)
DOI: 10.6084/m9.figshare.c.3791188_d1
title: Additional file 1: of Health professionalsâ   job satisfaction and associated factors at public health centers in West Ethiopia

description: (SAV 55 kb)
DOI: 10.6084/m9.figshare.c.3792172_d4.v1
title: Additional file 4: of Defining the ABC of gene essentiality in streptococci

description: S. equi gene essentialities: tradis_essentiality produces three separate files per library of either essential, ambiguous or all genes. Genes within the essential and ambiguous output files were identified in the all genes file and labelled as such, with the remainder identified as non-essential or not-defined. Each tab contains; locus tag, gene name, ncrna, start, end, strand, read count, insertion index, gene length, insertion count, function and essentiality. tab 1, CA library; tab 2, TC library; tab 3, AG library; tab 4, AC library; tab 5, CT library; tab 6, GA library; tab 7, Master library. (XLSX 1242 kb)
DOI: 10.60656/b7e5a38e29e84acf
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 6 other sites on 14 Jan 2023