cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fmwrup
title: Occurrence Download

description: A dataset containing 124095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Physeter macrocephalus"
 ]
}

 The dataset includes 124095 records from 592 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033322-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwjfgj
title: Occurrence Download

description: A dataset containing 2380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.41_1, USA.34_1)",
 "TaxonKey is Ursus americanus"
 ]
}

 The dataset includes 2380 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033373-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kr3pcz
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.41_1, USA.34_1, USA.11_1, USA.47_1, PRI.28_1, USA.49_1, USA.1_1, USA.43_1)",
 "TaxonKey is Spilogale putorius"
 ]
}

 The dataset includes 207 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033374-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mcsn4
title: Occurrence Download

description: A dataset containing 54087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Saint Vincent and the Grenadines, Grenada)"
 ]
}

 The dataset includes 54087 records from 441 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033353-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/bvwzjf
title: Health_codes.tab

description: Diseases related to health codes
DOI: 10.57745/xeb3p3
title: LI_annual_data.csv

description: Annual data over 5 years for cows in the LI system
DOI: 10.57745/5niphu
title: Glossary.tab

description: Definition and description of the 53 variables used in the 8 data files and their possible values
DOI: 10.57745/oilqhu
title: LI_health_data.csv

description: Health data over 5 years for cows in the LI system
DOI: 10.57745/4lphq8
title: VLI_health_data.csv

description: Health data over 5 years for cows in the VLI system
DOI: 10.57745/cy9ltp
title: VLI_annual_data.csv

description: Annual data over 5 years for cows in the VLI system
DOI: 10.57745/661mv4
title: LI_reproduction_data.csv

description: Reproduction data over 5 years for cows in the LI system
DOI: 10.57745/gw8fkr
title: VLI_reproduction_data.csv

description: Reproduction data over 5 years for cows in the VLI system
DOI: 10.57745/uxja3w
title: VLI_lactation_data.tab

description: Lactation data over 5 years for cows in the VLI system
DOI: 10.57745/mpixn8
title: VLI & LI plant species_abundance.tab

description: Average abundance per hectare of different plant species in the LI and VLI systems
DOI: 10.57745/qylzoo
title: LI_lactation_data.tab

description: Lactation data over 5 years for cows in the LI system
DOI: 10.57745/gkjtja
title: LI_health_data.tab

description: Health data over 5 years for cows in the LI system
DOI: 10.57745/i7tutx
title: LI_annual_data.tab

description: Annual data over 5 years for cows in the LI system
DOI: 10.57745/ef7ofl
title: LI_reproduction_data.tab

description: Reproduction data over 5 years for cows in the LI system
DOI: 10.57745/pb8mmg
title: VLI_health_data.tab

description: Health data over 5 years for cows in the VLI system
DOI: 10.57745/v2wzh5
title: VLI_annual_data.tab

description: Annual data over 5 years for cows in the VLI system
DOI: 10.57745/itikd6
title: VLI_reproduction_data.tab

description: Reproduction data over 5 years for cows in the VLI system
DOI: 10.57745/4gnw5c
title: README.txt

description: General information
DOI: 10.57745/qksxev
title: Data from cows in low input (LI) and very low input (VLI) mountain dairy systems

description: The dataset contains production, reproduction and health data from high yielding cows (Holstein and Montbeliarde) reared in either a Very-Low-Input system (no concentrates except for veal calves) or a Low-Input system (less concentrates and mineral fertilisers than conventional systems while safeguarding milk production and nitrogen balance of the land) with a short mating season in spring to align the milk and the grass production curves (24 cows/system for 5 years). Reproductive management included artificial insemination, the use of a bull at the end of the mating season, the use of sexed semen for heifers, and extended lactations for some non-pregnant cows. The dataset provides references for the production and the sustainability of such low input dairy systems.
DOI: 10.15468/dl.ugzt8w
title: Occurrence Download

description: A dataset containing 795538 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 795538 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033349-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17610181
title: Random Walk for Planning Problems

description: datasets and code to generate new datasets for the paper "Learning Heuristic Functions with Graph Neural Networks for Numeric Planning". to be presented in AAAI-2026
DOI: 10.5281/zenodo.17610180
title: Random Walk for Planning Problems

description: datasets and code to generate new datasets for the paper "Learning Heuristic Functions with Graph Neural Networks for Numeric Planning". to be presented in AAAI-2026
DOI: 10.15468/dl.ewaaf9
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Geometry POLYGON((-142.53798 34.7838,-113.93862 34.7838,-113.93862 48.3215,-142.53798 48.3215,-142.53798 34.7838))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is June",
 "OccurrenceStatus is Present",
 "TaxonKey is Enhydra lutris",
 "Year 2024-2025"
 ]
}

 The dataset includes 265 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033378-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5amb2q
title: Occurrence Download

description: A dataset containing 7209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spondias mombin",
 "Year 1970-2025"
 ]
}

 The dataset includes 7209 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033377-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7p7a6
title: Occurrence Download

description: A dataset containing 1278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eumops glaucinus"
 ]
}

 The dataset includes 1278 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033380-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbtg4r
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.41561 34.23639,-79.08631 34.23639,-79.08631 37.39016,-83.41561 37.39016,-83.41561 34.23639))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus",
 "Year 1000-2025"
 ]
}

 The dataset includes 41 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033379-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22rxwh
title: Occurrence Download

description: A dataset containing 3222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dionaea muscipula"
 ]
}

 The dataset includes 3222 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033381-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k87872
title: Occurrence Download

description: A dataset containing 2307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 2307 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001570-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15282408
title: cynopoecilus_fulgens_spades_01.fasta.gz
DOI: 10.5281/zenodo.15282409
title: cynopoecilus_fulgens_spades_01.fasta.gz
DOI: 10.15468/dl.zuge9v
title: Occurrence Download

description: A dataset containing 370887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Threskiornis aethiopicus (Latham, 1790)"
 ]
}

 The dataset includes 370887 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001560-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sxksn0318
title: Do Synthesis Centers Synthesize? A Semantic Analysis of Topical Diversity in Research

description: Synthesis centers are a form of scientific organization that catalyzes and
 supports research that integrates diverse theories, methods and data
 across spatial or temporal scales to increase the generality, parsimony,
 applicability, or empirical soundness of scientific explanations.
 Synthesis working groups are a distinctive form of scientific
 collaboration that produce consequential, high-impact publications. But no
 one has asked if synthesis working groups synthesize: are their
 publications substantially more diverse than others, and if so, in what
 ways and with what effect? We investigate these questions by using Latent
 Dirichlet Analysis to compare the topical diversity of papers published by
 synthesis center collaborations with that of papers in a reference corpus.
 Topical diversity was operationalized and measured in several ways, both
 to reflect aggregate diversity and to emphasize particular aspects of
 diversity (such as variety, evenness, and balance). Synthesis center
 publications have greater topical variety and evenness, but less
 disparity, than do papers in the reference corpus. The influence of
 synthesis center origins on aspects of diversity is only partly mediated
 by the size and heterogeneity of collaborations: when taking into account
 the numbers of authors, distinct institutions, and references, synthesis
 center origins retain a significant direct effect on diversity measures.
 Controlling for the size and heterogeneity of collaborative groups,
 synthesis center origins and diversity measures significantly influence
 the visibility of publications, as indicated by citation measures. We
 conclude by suggesting social processes within collaborations that might
 account for the observed effects, by inviting further exploration of what
 this novel textual analysis approach might reveal about interdisciplinary
 research, and by offering some practical implications of our results.
description: See Publication
description: See ReadMe
DOI: 10.5061/dryad.8gtht76mh
title: Self and nonself recognition affects clonal reproduction and competition in the pea aphid

description: The spatial interaction of clonal organisms is an unsolved but crucial
 topic in evolutionary biology. We evaluated the interactions
 between aphid clones using a color mutant (yellow) and an original (green)
 clone. Colonies founded by two aphids of the same clone and mixed
 colonies, founded by a green aphid and a yellow
 aphid, were set up to observe population growth for 15
 days. We confirmed positive competition effects, with mixed
 colonies increasing in size more rapidly than clonal colonies. In
 mixed colonies where reproduction started
 simultaneously, green aphids overwhelmed yellow aphids in number,
 and yellow aphids restrained reproduction. However, when yellow
 aphids started to reproduce earlier, they outnumbered
 the green aphids. To test whether aphids have the ability to control
 reproduction according to the densities of self and non-self clones, one
 yellow aphid or one antennae-excised yellow aphid was transferred into a
 highly dense green clone colony. Intact yellow aphids produced fewer
 nymphs in crowded green colonies, whereas the fecundity of
 antennae-excised aphids did not change. Thus, we conclude that aphid
 clones can discriminate between self and non-self
 clones, and can regulate their reproduction, depending on whether they are
 superior or inferior in number to their competitors.
DOI: 10.15468/dl.utxqs8
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis quimbaya"
 ]
}

 The dataset includes 66 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002489-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qv9s4mwc6
title: Chromosome-level genome assembly of the razor clam Sinonovacula constricta (Lamarck, 1818)

description: Bivalves, a highly diverse and the most evolutionarily successful class of
 invertebrates native to aquatic habitats, provide valuable molecular
 resources for understanding the evolutionary adaptation and aquatic
 ecology. Here we reported a high-quality chromosome-level genome assembly
 of the razor clam Sinonovacula constricta using Pacific Bioscience
 single-molecule real-time sequencing, Illumina paired-end sequencing, 10X
 Genomics linked-reads and Hi-C reads. The genome size was 1,220.85 Mb,
 containing scaffold N50 of 65.93 Mb and contig N50 of 976.94 Kb. A total
 of 899 complete (91.92%) and seven partial (0.72%) matches of the 978
 metazoa Benchmarking Universal Single-Copy Orthologs were determined in
 this genome assembly. And Hi-C scaffolding of the genome resulted in 19
 pseudochromosomes. A total of 28,594 protein-coding genes were predicted
 in the S. constricta genome, of which 25,413 genes (88.88%) were
 functionally annotated. In addition, 39.79% of the assembled genome was
 composed of repetitive sequences, and 4,372 non-coding RNAs were
 identified. The enrichment analyses of the significantly expanded and
 contracted genes suggested an evolutionary adaptation of S. constricta to
 highly stressful living environments. In summary, the genomic resources
 generated in this work not only provide a valuable reference genome for
 investigating the molecular mechanisms of S. constricta biological
 functions and evolutionary.
DOI: 10.5061/dryad.8gtht76mj
title: MSAP and AFLP fingerprints

description: Plant species differ in their ecological amplitude, with some species
 occurring in very different habitats under strongly differentiated
 environmental conditions. We were interested in to what extent the
 occurrence of Linum catharticum in dry calcareous grasslands (Bromion) and
 wet litter meadows (Molinion), two habitats on opposing ends concerning
 e.g., moisture level, is reflected on the genetic and epigenetic level.
 Using AFLP (amplified fragment length polymorphisms) and MSAP (methylation
 sensitive amplification polymorphisms) analyses we studied the genetic and
 epigenetic variation of L. catharticum from calcareous grasslands and
 litter meadows. From each habitat we included five study sites with 16
 individuals per sampling location. We observed lower genetic than
 epigenetic diversity, but considerable differentiation among habitats,
 which was stronger on the genetic than the epigenetic level. Additionally
 we observed a strong correlation of genetic and epigenetic distance,
 irrespective of geographic distance. The dataset included a large portion
 of fragments exclusively found in individuals from one or the other
 habitat. Some epigenetic fragments even occurred in different methylation
 states depending on the habitat. We conclude that environmental effects
 act on both the genetic and epigenetic level, producing the clear
 differentiation among plant individuals from calcareous grasslands and
 litter meadows. These results may also point into the direction of ecotype
 formation in this species.
DOI: 10.5061/dryad.pzgmsbchx
title: Rear-edge, low-diversity, and haplotypic uniformity in cold-adapted Bupleurum euphorbioides interglacial refugia populations

description: The high genetic diversity of rear-edge refugia populations is predicted
 to have resulted from species repeatedly migrating to low latitudes during
 glacial periods over the course of Quaternary climate change. However,
 several recent empirical studies of cold tolerant plants revealed the
 opposite pattern. We investigated whether current habitats of the
 cold-adapted and range-restricted Bupleurum euphorbioides in the
 Baekdudaegan, South Korea and North Korea could be interglacial refugia,
 and documented how their rear-edge populations differ genetically from
 those of typical temperate species. Phylogeographic analysis and
 ecological niche modeling (ENM) were used. The genetic structure was
 analyzed using microsatellite markers and chloroplast DNA sequences. The
 congener B. longiradiatum was included as a typical temperate plant
 species. Despite having almost identical life history traits, these
 congeneric species exhibited contrasting patterns of genetic diversity.
 ENM revealed an apparent maximum range contraction during the last
 interglacial. In contrast, its range expanded northward to the Russian Far
 East (Primorsky) during the Last Glacial Maximum. Thus, we hypothesize
 that B. euphorbioides retreated to its current refugia during interglacial
 periods. Unlike populations in the central region, the rear-edge
 populations were genetically impoverished and uniform, both within
 populations and in pooled regional populations. The rear-edge B.
 euphorbioides survived at least one past interglacial, contributing to the
 species’ genetic diversity. We believe that such genetic variation in the
 cold-adapted B. euphorbioides gives the species the necessary adaptations
 to survive an upcoming favorable environment (the next glacial), unless
 there is artificial environmental change.
description: The allele sizes and peaks were determined via Peak Scanner v. 2
 software (Applied Biosystems).
DOI: 10.5061/dryad.ffbg79cs1
title: Phylogenomic insights into the origin of primary plastids

description: The origin of plastids was a major evolutionary event that paved the way
 for an astonishing diversification of photosynthetic eukaryotes. Plastids
 originated by endosymbiosis between a heterotrophic eukaryotic host and
 cyanobacteria, presumably in a common ancestor of the primary
 photosynthetic eukaryotes (Archaeplastida). A single origin of primary
 plastids is well supported by plastid evidence but not by nuclear
 phylogenomic analyses, which have consistently failed to recover the
 monophyly of Archaeplastida hosts. Importantly, plastid monophyly and
 nonmonophyletic hosts could be explained under scenarios of independent or
 serial eukaryote-to-eukaryote endosymbioses. Here, we assessed the
 strength of the signal for the monophyly of Archaeplastida hosts in four
 available phylogenomic data sets. The effect of phylogenetic methodology,
 data quality, alignment trimming strategy, gene and taxon sampling, and
 the presence of outlier genes were investigated. Our analyses revealed a
 lack of support for host monophyly in the shorter individual data sets.
 However, when analyzed together under rigorous data curation and complex
 mixture models, the combined nuclear data sets supported the monophyly of
 primary photosynthetic eukaryotes (Archaeplastida) and recovered a
 putative association with plastid-lacking Picozoa. This study represents
 an important step toward better understanding deep eukaryotic evolution
 and the origin of plastids.
description: All analyses are based on publicly available data.
DOI: 10.5061/dryad.qjq2bvqdf
title: Wild strawberry shows genetic variation in tolerance but not resistance to a generalist herbivore

description: Plants’ defenses against herbivores usually include both resistance and
 tolerance mechanisms. Their deployment has predominantly been studied in
 either single plant genotypes, or multiple genotypes exposed to single
 herbivores. In natural situations, however, most plants are attacked by
 multiple herbivores. Therefore, aims of this study were to assess and
 compare effects of single and multiple herbivores on plant resistance and
 tolerance traits, and the consequences for overall plant performance. For
 this, we exposed multiple genotypes of wild woodland strawberry (Fragaria
 vesca) to jasmonic acid (JA), to mimic chewing herbivory and induce the
 plants’ defense responses, then introduced the generalist herbivore
 Spodoptera littoralis to feed on them. We found that woodland strawberry
 consistently showed resistance to S. littoralis herbivory, with no
 significant genetic variation between the genotypes. By contrast, the
 studied genotypes showed high variation in tolerance, suggesting
 evolutionary potential in this trait. Prior JA application did not alter
 these patterns, although it induced an even higher level of resistance in
 all tested genotypes. The study provides novel information that may be
 useful for breeders seeking to exploit tolerance and resistance mechanisms
 to improve strawberry crops’ viability and yields, particularly when
 multiple herbivores pose significant threats.
description: The data was collected from a greenhouse experiment, in which 16
 genotypes of woodland strawberry <em>Fragaria vesca </em>were
 first exposed to Jasmonic acid, followed by the feeding of leaf cotton
 worm <em>Spodoptera littoralis. </em>The proportion of damaged
 leaf area was estimated on individual plants to assess the resistance of
 these genotypes and the increase of leaf number of the plants were
 recorded after the damage of <em>S. littoralis </em>as the
 tolerance responses of the genotypes<em>. </em>The plant
 biomass were also measured to examine how the fitness of
 those <em>F. vesca</em> genotypes responds to the induced
 resistance and tolerance by Jasmonic acid and <em>S.
 littoralis</em>.
description: The data can be freely used to advance the related field as long
 as the current study is acknowledged.