cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8243270.v1
title: BIVAS: A scalable Bayesian method for bi-level variable selection with applications

description: In this paper, we consider a Bayesian bi-level variable selection problem in high-dimensional regressions. In many practical situations, it is natural to assign group membership to each predictor. Examples include that genetic variants can be grouped at the gene level and a covariate from different tasks naturally forms a group. Thus, it is of interest to select important groups as well as important members from those groups. The existing Markov Chain Monte Carlo (MCMC) methods are often computationally intensive and not scalable to large data sets. To address this problem, we consider variational inference for bi-level variable selection (BIVAS). In contrast to the commonly used mean-field approximation, we propose a hierarchical factorization to approximate the posterior distribution, by utilizing the structure of bi-level variable selection. Moreover, we develop a computationally efficient and fully parallelizable algorithm based on this variational approximation. We further extend the developed method to model data sets from multi-task learning. The comprehensive numerical results from both simulation studies and real data analysis demonstrate the advantages of BIVAS for variable selection, parameter estimation and computational efficiency over existing methods. The method is implemented in R package ‘bivas’ available at https://github.com/mxcai/bivas.
DOI: 10.6084/m9.figshare.8243270.v2
title: BIVAS: A Scalable Bayesian Method for Bi-Level Variable Selection With Applications

description: In this article, we consider a Bayesian bi-level variable selection problem in high-dimensional regressions. In many practical situations, it is natural to assign group membership to each predictor. Examples include that genetic variants can be grouped at the gene level and a covariate from different tasks naturally forms a group. Thus, it is of interest to select important groups as well as important members from those groups. The existing Markov chain Monte Carlo methods are often computationally intensive and not scalable to large datasets. To address this problem, we consider variational inference for bi-level variable selection. In contrast to the commonly used mean-field approximation, we propose a hierarchical factorization to approximate the posterior distribution, by using the structure of bi-level variable selection. Moreover, we develop a computationally efficient and fully parallelizable algorithm based on this variational approximation. We further extend the developed method to model datasets from multitask learning. The comprehensive numerical results from both simulation studies and real data analysis demonstrate the advantages of BIVAS for variable selection, parameter estimation, and computational efficiency over existing methods. The method is implemented in R package “bivas” available at https://github.com/mxcai/bivas. Supplementary materials for this article are available online.
DOI: 10.5281/zenodo.10684243
title: BLINGVIZM VA UNING TURLARI
DOI: 10.5281/zenodo.10684244
title: BLINGVIZM VA UNING TURLARI
DOI: 10.6084/m9.figshare.21343189.v1
title: Additional file 1 of Genome-wide identification of key enzyme-encoding genes and the catalytic roles of two 2-oxoglutarate-dependent dioxygenase involved in flavonoid biosynthesis in Cannabis sativa L.

description: Additional file 1: Table S1. Physical characteristics of the major enzyme-encoding genes of flavonoid metabolic pathway in C. sativa.
DOI: 10.6084/m9.figshare.21343210.v1
title: Additional file 8 of Genome-wide identification of key enzyme-encoding genes and the catalytic roles of two 2-oxoglutarate-dependent dioxygenase involved in flavonoid biosynthesis in Cannabis sativa L.

description: Additional file 8: Table S5. Cloning primers of CsFLS2 and CsFLS3 in C. sativa.
DOI: 10.6084/m9.figshare.14527655
title: Additional file 1 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 1: Table S1. The qRT-PCR primers of six DE lncRNAs, six DE miRNAs and seven DE genes for identification by RNA-seq.
DOI: 10.6084/m9.figshare.14527670
title: Additional file 6 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 6: Table S5. The 389 differentially expressed lncRNAs (DE lncRNAs), 73 DE miRNAs, and 354 DE genes.
DOI: 10.6084/m9.figshare.21343249
title: Additional file 2 of Identification of pyroptosis-related genes and long non-coding RNAs signatures in osteosarcoma

description: Additional file 2: Table S3. The 57 PRGs
DOI: 10.6084/m9.figshare.21343249.v1
title: Additional file 2 of Identification of pyroptosis-related genes and long non-coding RNAs signatures in osteosarcoma

description: Additional file 2: Table S3. The 57 PRGs
DOI: 10.6084/m9.figshare.14527661
title: Additional file 3 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 3: Table S3. Summary of sequencing reads aligned with the Gallus gallus genome.
DOI: 10.6084/m9.figshare.14527670.v1
title: Additional file 6 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 6: Table S5. The 389 differentially expressed lncRNAs (DE lncRNAs), 73 DE miRNAs, and 354 DE genes.
DOI: 10.6084/m9.figshare.14527673
title: Additional file 7 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 7: Table S6. GO and KEGG pathway enrichment of differentially expressed lncRNA (DE lncRNA) target genes.
DOI: 10.15468/dl.eem0de
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "TaxonKey is Scytalopus robbinsi Krabbe & Schulenberg, 1997",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010126-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93gqxh
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.78578 37.8427,-8.80104 37.92646,-8.80167 37.92591,-8.80195 37.92565,-8.80225 37.92548,-8.8025 37.92546,-8.80379 37.92544,-8.80423 37.92548,-8.80447 37.92546,-8.80481 37.92538,-8.805 37.92522,-8.80549 37.92505,-8.80587 37.92514,-8.80627 37.92496,-8.80645 37.92485,-8.80719 37.92469,-8.82959 37.92463,-8.82925 37.9215,-8.82868 37.91958,-8.82855 37.91922,-8.82704 37.91616,-8.82686 37.91587,-8.82649 37.9155,-8.82657 37.91524,-8.82648 37.91491,-8.82607 37.9136,-8.82602 37.91316,-8.82556 37.9118,-8.82543 37.91003,-8.82539 37.9098,-8.82491 37.90775,-8.82485 37.90757,-8.82415 37.90572,-8.82248 37.90287,-8.82224 37.9026,-8.82237 37.90149,-8.82203 37.89836,-8.82145 37.89664,-8.8215 37.89531,-8.82147 37.89501,-8.82124 37.89366,-8.8202 37.89062,-8.81997 37.88842,-8.81993 37.8883,-8.8199 37.88782,-8.81977 37.88731,-8.8197 37.88702,-8.81963 37.88636,-8.81937 37.88381,-8.81894 37.88254,-8.81902 37.88228,-8.81915 37.88191,-8.8195 37.87878,-8.81916 37.87565,-8.81883 37.87441,-8.81868 37.87422,-8.81875 37.8736,-8.81841 37.87047,-8.81739 37.86743,-8.81768 37.86439,-8.81801 37.86351,-8.81837 37.86038,-8.81829 37.85971,-8.81908 37.85834,-8.81989 37.85618,-8.81993 37.85602,-8.82016 37.85515,-8.82051 37.85202,-8.82017 37.84889,-8.81998 37.84811,-8.81993 37.84795,-8.81911 37.84569,-8.818 37.8438,-8.81777 37.84316,-8.8176 37.84286,-8.81756 37.84255,-8.81654 37.83951,-8.81526 37.83744,-8.78578 37.8427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Rhodophyta",
 "TaxonKey is Chlorophyta"
 ]
 }
 ]
}

 The dataset includes 70 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004318-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmx7zu
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amomum unifolium Gagnep."
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006573-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lmymdp
title: Occurrence Download

description: A dataset containing 411579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Country is Colombia",
 "HasGeospatialIssue is false",
 "HasCoordinate is false"
 ]
}

 The dataset includes 411579 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88e66c
title: Occurrence Download

description: A dataset containing 2310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paris polyphylla Sm."
 ]
}

 The dataset includes 2310 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252522-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzxqsh
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amomum trilobum Gagnep."
 ]
}

 The dataset includes 32 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006569-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yeecfx
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Microzooplankton abundance measured on water bottle samples at station PS65/466-2"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pm56ap
title: Occurrence Download

description: A dataset listing the 29 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paris polyphylla Sm."
 ]
}

 The dataset's 29 records were derived from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252527-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewmkaj
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amomum xizangense L.Fu, Jian-P.Huang & Y.S.Ye"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006585-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk2ttl
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.49701 -25.65033,-70.63934 -25.64484,-71.50177 -29.14948,-69.88678 -29.22638,-69.6286 -28.4024,-69.1507 -27.95746,-68.9859 -27.55096,-68.79913 -27.32025,-68.81012 -27.16095,-68.55743 -27.18842,-68.2608 -26.93573,-68.56842 -26.49628,-68.54645 -26.30402,-68.36517 -26.18866,-68.49701 -25.65033))",
 "HasCoordinate is true",
 "TaxonKey is Phoenicopterus chilensis Molina, 1782",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 85 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011895-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5rgzh
title: Occurrence Download

description: A dataset containing 2967 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Bolivia (Plurinational State of)"
 ]
 },
 "TaxonKey is Zeyheria montana Mart."
 ]
}

 The dataset includes 2967 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279930-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kb2wd
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptocarya coriacea (Kosterm.) van der Werff"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011337-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsnvte
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum adamsii Hágsater & Dodson"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158132-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnss4a
title: Occurrence Download

description: A dataset containing 495378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "GadmGid is IND",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Dromadidae",
 "TaxonKey is Ibidorhynchidae",
 "TaxonKey is Recurvirostridae",
 "TaxonKey is Rostratulidae",
 "TaxonKey is Jacanidae",
 "TaxonKey is Scolopacidae"
 ]
 },
 "Year 2000-2020"
 ]
}

 The dataset includes 495378 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279928-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfh3jm
title: Occurrence Download

description: A dataset listing the 2301 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "PublishingCountry is Finland"
 ]
}

 The dataset's 2301 records were derived from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011922-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huyskm
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron stuessyi Valdeb."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158134-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5kabo
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ozotoceros bezoarticus (Linnaeus, 1758)"
 ]
}

 The dataset includes 298 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011923-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vd92ku
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptocarya costata Blume"
 ]
}

 The dataset includes 87 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011340-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.572wdt
title: Occurrence Download

description: A dataset containing 4468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((6.625 52.275,6.675 52.275,6.675 52.325,6.625 52.325,6.625 52.275))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 4468 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307755-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pksmt
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia abunan M.A.D.Souza & Sobral"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158133-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sllh57
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Appendix 1b) Abundance and stable oxygen and carbon isotope ratios of Globigerinoides ruber in the Holocene section of ODP Hole 160-964A"
 ]
}

 The dataset includes 198 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2u75rs
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammospermophilus nelsoni (Merriam, 1893)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 436 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252496-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j238xt
title: Occurrence Download

description: A dataset containing 3018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.95294527175725",
 "DecimalLongitude is less than 7.95600482494165",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 3018 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006548-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xscscn
title: Occurrence Download

description: A dataset containing 12528 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acridotheres javanicus Cabanis, 1851"
 ]
}

 The dataset includes 12528 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8ycd7
title: Occurrence Download

description: A dataset containing 82512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82512 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252498-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmf7mz
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthemis bornmuelleri Stoj. & Acht."
 ]
}

 The dataset includes 436 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006524-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vovzqg
title: Occurrence Download

description: A dataset containing 10105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tradescantia fluminensis Vell."
 ]
}

 The dataset includes 10105 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011940-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6vd27
title: Occurrence Download

description: A dataset containing 97811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tetrastes bonasia (Linnaeus, 1758)"
 ]
}

 The dataset includes 97811 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279929-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwqmfs
title: Occurrence Download

description: A dataset containing 6781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Switzerland",
 "DatasetKey is Swiss National Mammal Databank",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cervus elaphus Linnaeus, 1758"
 ]
}

 The dataset includes 6781 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006583-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0i287c
title: Occurrence Download

description: A dataset containing 2733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazama americana (Erxleben, 1777)"
 ]
}

 The dataset includes 2733 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010127-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7899yu
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Quercus acutifolia Née",
 "Year 2001-2021"
 ]
}

 The dataset includes 236 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290763-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.