cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4tjyra
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oeosporangium viride",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002559-250914085247600/datasets/export for details.
DOI: 10.15468/dl.esznwg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oeosporangium viride",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002560-250914085247600/datasets/export for details.
DOI: 10.15468/dl.m55wsn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oeosporangium viride",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002561-250914085247600/datasets/export for details.
DOI: 10.15468/dl.ecd49s
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.0014 18.62588,-99.05049 18.689,-99.10808 18.69934,-99.13466 18.6794,-99.18007 18.61222,-99.06157 18.55611,-99.0014 18.62588))",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 56 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002563-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17086328
title: ECOSoundSet: a finely annotated dataset for the automated acoustic identification of Orthoptera and Cicadidae in North, Central and temperate Western Europe. 2025

description: Here you can download ECOSoundSet (European Cicadidae and Orthoptera Sound dataSet), a dataset containing 11,290 recordings of 201 orthopteran and 24 cicada species (219 and 26 subspecies, respectively) present in North, Central, and temperate Western Europe (Andorra, Belgium, Denmark, mainland France and Corsica, Germany, Ireland, Luxembourg, Monaco, Netherlands, United Kingdom, Switzerland), collected partly through targeted fieldwork in South France and Catalonia and partly through contributions from various European entomologists. The dataset is composed of a combination of coarsely labeled recordings, for which we can only infer the presence, at some point, of their target species (weak labeling), and finely annotated recordings, for which we know the specific time and frequency range of each insect sound present in the recording (strong labeling). We also provide a train/validation/test split of the annotated recordings, with respective approximate proportions of 0.8, 0.1 and 0.1, in order to facilitate their incorporation in the training and evaluation of deep learning algorithms.
DOI: 10.15468/dl.g7rcte
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oeosporangium viride",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002565-250914085247600/datasets/export for details.
DOI: 10.5281/zenodo.17054053
title: Network-based integrated tool for repurposing optimization (NiTRO): An algorithm for combinatorial predictions and rescue of viral-induced metabolic states

description: This dataset contains the complete implementation of NiTRO (Network-based integrated tool for repurposing optimization), a computational workflow for predicting metabolic state changes in cells infected with pathogenic coronaviruses (SARS-CoV-1, SARS-CoV-2, and MERS-CoV).

Repository Contents:- Tissue-specific constraint-based metabolic models for infected and non-infected HEK293T cells- MATLAB scripts implementing the NiTRO algorithm for drug repurposing- Pre-computed metabolic state predictions for different viruses at 24h and 48h post-infection- Supplementary data tables with transcriptomics data and identified metabolic perturbations- Complete documentation and figures from the manuscript

Key Features:NiTRO uses flux balance analysis (FBA) to detect viral-induced metabolic changes and performs in-silico double-gene deletions to identify genetic perturbations that can revert infected cell models to healthy-state values. This approach provides a systems-level characterization of metabolic vulnerabilities in infected cells and can identify specific genetic targets and synergistic effects of drugs for repurposing.

Methodology:The workflow integrates RNA-seq expression data with the human genome-scale metabolic model Recon3D using the GIMME algorithm to generate tissue-specific constraint-based models. Six infected models (SARS-CoV-1, SARS-CoV-2, and MERS-CoV at 24h and 48h) and two non-infected control models are provided.

Applications:This computational framework is applicable to any pathogen and provides actionable insights for rapid drug repurposing in response to emerging viral threats.

Corresponding Authors:Jean-Claude Twizere (jt4711@nyu.edu) and Kourosh Salehi-Ashtiani (ksa3@nyu.edu)
DOI: 10.5281/zenodo.17054054
title: Network-based integrated tool for repurposing optimization (NiTRO): An algorithm for combinatorial predictions and rescue of viral-induced metabolic states

description: This dataset contains the complete implementation of NiTRO (Network-based integrated tool for repurposing optimization), a computational workflow for predicting metabolic state changes in cells infected with pathogenic coronaviruses (SARS-CoV-1, SARS-CoV-2, and MERS-CoV).

Repository Contents:- Tissue-specific constraint-based metabolic models for infected and non-infected HEK293T cells- MATLAB scripts implementing the NiTRO algorithm for drug repurposing- Pre-computed metabolic state predictions for different viruses at 24h and 48h post-infection- Supplementary data tables with transcriptomics data and identified metabolic perturbations- Complete documentation and figures from the manuscript

Key Features:NiTRO uses flux balance analysis (FBA) to detect viral-induced metabolic changes and performs in-silico double-gene deletions to identify genetic perturbations that can revert infected cell models to healthy-state values. This approach provides a systems-level characterization of metabolic vulnerabilities in infected cells and can identify specific genetic targets and synergistic effects of drugs for repurposing.

Methodology:The workflow integrates RNA-seq expression data with the human genome-scale metabolic model Recon3D using the GIMME algorithm to generate tissue-specific constraint-based models. Six infected models (SARS-CoV-1, SARS-CoV-2, and MERS-CoV at 24h and 48h) and two non-infected control models are provided.

Applications:This computational framework is applicable to any pathogen and provides actionable insights for rapid drug repurposing in response to emerging viral threats.

Corresponding Authors:Jean-Claude Twizere (jt4711@nyu.edu) and Kourosh Salehi-Ashtiani (ksa3@nyu.edu)
DOI: 10.57760/sciencedb.j00001.01247
title: A dataset of paleontological fossil specimens during the construction phase of the database in Inner Mongolia Autonomous Region (2021–2023)
title: 内蒙古自治区古生物化石标本数据集（2021–2023）

description:  Inner Mongolia Autonomous Region is very rich in the geological resources of paleontological fossils and strata, which hold significant and scientific value for research of paleontology and stratigraphy, and are irreplaceable for geological surveys and resource investigations. Through cooperation between paleontology experts and relevant departments in Inner Mongolia Autonomous Region, the construction of the fossil specimen database in Inner Mongolia has achieved phased results. This dataset is the periodic outcome of the construction of paleontological fossil specimen database in Inner Mongolia Autonomous Region. It documents detailed and comprehensive information of more than 637 paleontological fossil specimens housed in four institutions, namely Geological Survey and Research Institute of Inner Mongolia, Nanjing Institute of Geology and Palaeontology Chinese Academy of Sciences, Inner Mongolia Museum of Natural History, and Inner Mongolia Museum. This dataset includes paleontological classification, physical information of fossil specimens, geological information, geographical information of fossil sites, and fossil specimen images. This dataset can support basic research in paleontology under new scientific paradigms and facilitate the integration of paleontology with information science. It also information and decision-making support for geological surveys, resource assessments, and geopark development in Inner Mongolia Autonomous Region.
description:  Inner Mongolia Autonomous Region is very rich in the geological resources of paleontological fossils and strata, which hold significant and scientific value for research of paleontology and stratigraphy, and are irreplaceable for geological surveys and resource investigations. Through cooperation between paleontology experts and relevant departments in Inner Mongolia Autonomous Region, the construction of the fossil specimen database in Inner Mongolia has achieved phased results. This dataset is the periodic outcome of the construction of paleontological fossil specimen database in Inner Mongolia Autonomous Region. It documents detailed and comprehensive information of more than 637 paleontological fossil specimens housed in four institutions, namely Geological Survey and Research Institute of Inner Mongolia, Nanjing Institute of Geology and Palaeontology Chinese Academy of Sciences, Inner Mongolia Museum of Natural History, and Inner Mongolia Museum. This dataset includes paleontological classification, physical information of fossil specimens, geological information, geographical information of fossil sites, and fossil specimen images. This dataset can support basic research in paleontology under new scientific paradigms and facilitate the integration of paleontology with information science. It also information and decision-making support for geological surveys, resource assessments, and geopark development in Inner Mongolia Autonomous Region.
DOI: 10.15468/dl.4b23t5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thecturota marchii",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002568-250914085247600/datasets/export for details.
DOI: 10.15468/dl.zn5tr6
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((109.92658 -35.98686,130.06312 -35.98686,130.06312 -11.43338,109.92658 -11.43338,109.92658 -35.98686))",
 "HasGeospatialIssue is false",
 "TaxonKey is Dasyurus hallucatus",
 "Year 1990-2025"
 ]
}

 The dataset includes 82 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002571-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5twa5g
title: Occurrence Download

description: A dataset containing 41503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Commelina erecta"
 ]
}

 The dataset includes 41503 records from 624 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002569-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djg2yk
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonanthus angustifolius (Kunth) Gilg"
 ]
}

 The dataset includes 472 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134990-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s57ymf
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Motleyia J.T.Johanss."
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217017-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbvks6
title: Occurrence Download

description: A dataset containing 1140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyceros Lour."
 ]
}

 The dataset includes 1140 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217040-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3hw3h
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kennedyidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 60 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022480-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnc57z
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia baueri Benth."
 ]
}

 The dataset includes 433 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012809-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4mxy5
title: Occurrence Download

description: A dataset containing 514531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "Country is one of (United States of America)",
 "MediaType is Image"
 ]
}

 The dataset includes 514531 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422010-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n73jpb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eirenis africanus (Boulenger, 1914)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276942-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpycsr
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didymodon subandreaeoides (Kindb.) R.H.Zander"
 ]
}

 The dataset includes 288 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037297-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4939s
title: Occurrence Download

description: A dataset containing 455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonanthus grandiflorus (Aubl.) Hassl."
 ]
}

 The dataset includes 455 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134992-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wym5qm
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elgaria paucicarinata (Fitch, 1934)"
 ]
}

 The dataset includes 386 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276946-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wm8pv
title: Occurrence Download

description: A dataset containing 94741 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The crustaceans collection (IU) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 94741 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276965-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttqpjf
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fraxinus mandshurica Rupr."
 ]
}

 The dataset includes 34 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012396-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h5kkh
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachystylus K.Schum."
 ]
}

 The dataset includes 167 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217041-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73vycz
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonanthus matogrossensis (J.G.M.Pers. & Maas) Struwe & V.A.Albert"
 ]
}

 The dataset includes 60 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134995-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjxdbf
title: Occurrence Download

description: A dataset containing 867 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Normandia Hook.f."
 ]
}

 The dataset includes 867 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217031-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4utcu6
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonanthus longistylus (Pers. & Maas) Struwe & Albert"
 ]
}

 The dataset includes 49 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134993-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8tz84
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus mindoensis Peters, 1973"
 ]
}

 The dataset includes 186 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205885-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x9yf7
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bufo verrucosissimus (Pallas, 1814)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 145 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015749-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txptjs
title: Occurrence Download

description: A dataset containing 1157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coussapoa villosa Poepp. & Endl."
 ]
}

 The dataset includes 1157 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134998-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s854t
title: Occurrence Download

description: A dataset containing 3746 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anacardium excelsum (Bertero & Balb.) Skeels"
 ]
}

 The dataset includes 3746 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134999-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjujax
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nostolachma T.Durand"
 ]
}

 The dataset includes 193 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217032-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25pdjj
title: Occurrence Download

description: A dataset containing 928 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonanthus viridiflorus (Mart.) Gilg"
 ]
}

 The dataset includes 928 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135003-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdbcft
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octotropis Bedd."
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217033-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggpp92
title: Occurrence Download

description: A dataset containing 893 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelone obliqua L."
 ]
}

 The dataset includes 893 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135022-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.