cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14998735
title: Dysbiotic Gut Fungi Exacerbate Klebsiella pneumoniae Pneumonia via Dectin-1-Mediated Alveolar Macrophage Hyperactivation

description: The escalating antibiotic resistance of Klebsiella pneumoniae underscores the urgent need for novel therapeutic strategies. While gut bacterial dysbiosis exacerbates pulmonary infections, the role of gut fungi in modulating lung immunity remains understudied. Here, we demonstrate that antibiotic-induced gut fungal expansion aggravates K. pneumoniae pneumonia by enhancing alveolar macrophage (AM)-driven inflammation via Dectin-1 signaling. Clinical analyses revealed that antibiotic-treated pneumonia patients exhibited gut bacterial depletion, fungal overgrowth (predominantly Candida spp.), and a positive correlation between fungal abundance and hospitalization duration. In murine models, antibiotic disruption of gut bacteria promoted fungal proliferation, which upregulated Dectin-1 expression in AMs. This activation triggered excessive IL-1β secretion and neutrophil recruitment, exacerbating lung injury and mortality. Crucially, antifungal intervention or Dectin-1 knockout (D1KO) reversed these effects, improving survival, reducing bacterial dissemination, and attenuating inflammatory cytokine levels. Mechanistically, gut fungi remotely potentiated pulmonary inflammation through the AM Dectin-1/IL-1β/neutrophil axis, independent of pathogen clearance. Our findings unveil a previously unrecognized gut-lung interplay mediated by fungal dysbiosis and highlight dual targeting of bacteria and fungi as a promising strategy for multidrug-resistant K. pneumoniae infections. This study provides mechanistic insights into microbial crosstalk and advances translational approaches for combating antibiotic-exacerbated pneumonias.
DOI: 10.5281/zenodo.14998736
title: Dysbiotic Gut Fungi Exacerbate Klebsiella pneumoniae Pneumonia via Dectin-1-Mediated Alveolar Macrophage Hyperactivation

description: The escalating antibiotic resistance of Klebsiella pneumoniae underscores the urgent need for novel therapeutic strategies. While gut bacterial dysbiosis exacerbates pulmonary infections, the role of gut fungi in modulating lung immunity remains understudied. Here, we demonstrate that antibiotic-induced gut fungal expansion aggravates K. pneumoniae pneumonia by enhancing alveolar macrophage (AM)-driven inflammation via Dectin-1 signaling. Clinical analyses revealed that antibiotic-treated pneumonia patients exhibited gut bacterial depletion, fungal overgrowth (predominantly Candida spp.), and a positive correlation between fungal abundance and hospitalization duration. In murine models, antibiotic disruption of gut bacteria promoted fungal proliferation, which upregulated Dectin-1 expression in AMs. This activation triggered excessive IL-1β secretion and neutrophil recruitment, exacerbating lung injury and mortality. Crucially, antifungal intervention or Dectin-1 knockout (D1KO) reversed these effects, improving survival, reducing bacterial dissemination, and attenuating inflammatory cytokine levels. Mechanistically, gut fungi remotely potentiated pulmonary inflammation through the AM Dectin-1/IL-1β/neutrophil axis, independent of pathogen clearance. Our findings unveil a previously unrecognized gut-lung interplay mediated by fungal dysbiosis and highlight dual targeting of bacteria and fungi as a promising strategy for multidrug-resistant K. pneumoniae infections. This study provides mechanistic insights into microbial crosstalk and advances translational approaches for combating antibiotic-exacerbated pneumonias.
DOI: 10.15468/dl.bg3n2g
title: Occurrence Download

description: A dataset containing 2874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron dauricum L."
 ]
}

 The dataset includes 2874 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000016-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxhp9z
title: Occurrence Download

description: A dataset containing 4692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is South Africa",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hesperiidae"
 ]
}

 The dataset includes 4692 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000018-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2v66ty
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.32072 46.73947,3.6644 46.73947,3.6644 48.55152,0.32072 48.55152,0.32072 46.73947))",
 "TaxonKey is Muscardinus avellanarius (Linnaeus, 1758)"
 ]
}

 The dataset includes 309 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000019-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy78nv
title: Occurrence Download

description: A dataset containing 1133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen)",
 "Continent is Africa",
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Hystrix africaeaustralis africaeaustralis",
 "Year 2015-2025"
 ]
}

 The dataset includes 1133 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000020-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/gxv7-x316
title: Biocrust Cryptogam Species Identification App

description: Images of cryptogam herbarium specimens used to train an AI custom vision model for species identification.
DOI: 10.5281/zenodo.14988862
title: Spectral Overlap Files (SOF) – ExoPhot Project
title: Results on the Exophot Project

description: Spectral Overlap Files (SOF) – ExoPhot Project

These Spectral Overlap Files (SOF) provide data on the spectral absorption rate (Γλ), which quantifies the number of photons absorbed per unit time and wavelength by a given photopigment in an exoplanetary environment. The calculation is based on the overlap between the stellar spectral flux density at the top of the exoplanet atmosphere (Fλ), the atmosphere transmittance (T), and the photopigment absorption cross-section (σ_abs).

These files are part of the ExoPhot project, which investigates the feasibility of photosynthetic activity on exoplanets orbiting different types of stars by evaluating the interaction between stellar radiation, planetary atmospheres, and photosynthetic pigments (both terrestrial and theoretical).

Contents of the SOF Files

Each SOF file includes the following parameters:

General Information



Date – Date of file generation

SED File – Stellar Spectral Energy Distribution file used

Atmosphere File – Atmospheric model file used

Photopigment File – Photopigment absorption data file used

Stellar Radius (Rs, km) – Radius of the host star

Exoplanet Orbit Semi-Major Axis (sma, km) – Distance between the exoplanet and the host star

Total Absorption Rate (γ_t, s⁻¹) – Overall photon absorption rate across all wavelengths

B Band Absorption Rate (γ_B, s⁻¹) – Absorption rate in the B band

Q Band Absorption Rate (γ_Q, s⁻¹) – Absorption rate in the Q band

B-Q Bands Cut-off (nm) – Wavelength division between B and Q bands

Photosynthetic Photon Flux Density (PPFD, μmol photon m⁻² s⁻¹) – Number of photons available for photosynthesis per unit area and time

Total Stellar Irradiance (S, W m⁻²) – Total incoming stellar energy per unit area


Spectral Data Columns



Col 1: Wavelength (wl, Å) – Wavelength of incident radiation

Col 2: Spectral Flux Density (Fλ, J cm⁻² s⁻¹ Å⁻¹) – Stellar flux at the top of the exoplanet’s atmosphere

Col 3: Atmosphere Transmittance (T, unitless) – Fraction of stellar radiation transmitted through the exoplanet’s atmosphere

Col 4: Pigment Absorption Cross Section (σ_abs, cm²) – Absorption efficiency of the photopigment

Col 5: Spectral Absorption Rate (Γλ, Å⁻¹ s⁻¹) – Rate of photon absorption per unit wavelength


These datasets are intended for use by the scientific community to analyze potential photosynthetic activity under different stellar and atmospheric conditions. The SOF files can support research in astrobiology, exoplanet habitability, and comparative planetology.

For more details, refer to the ExoPhot project documentation at Github or the following publications:



P. Marcos-Arenal, et al., ExoPhot: The photon absorption rate as a new metric for quantifying the exoplanetary photosynthetic activity fitness, Universe 8(12), 624 (2022)

J. García de la Concepción, et al., Phot0, a plausible primeval pigment on earth and rocky exoplanets, Phys. Chem. Chem. Phys., 24, 16979-16987 (2022)
DOI: 10.5281/zenodo.14988863
title: Spectral Overlap Files (SOF) – ExoPhot Project
title: Results on the Exophot Project

description: Spectral Overlap Files (SOF) – ExoPhot Project

These Spectral Overlap Files (SOF) provide data on the spectral absorption rate (Γλ), which quantifies the number of photons absorbed per unit time and wavelength by a given photopigment in an exoplanetary environment. The calculation is based on the overlap between the stellar spectral flux density at the top of the exoplanet atmosphere (Fλ), the atmosphere transmittance (T), and the photopigment absorption cross-section (σ_abs).

These files are part of the ExoPhot project, which investigates the feasibility of photosynthetic activity on exoplanets orbiting different types of stars by evaluating the interaction between stellar radiation, planetary atmospheres, and photosynthetic pigments (both terrestrial and theoretical).

Contents of the SOF Files

Each SOF file includes the following parameters:

General Information



Date – Date of file generation

SED File – Stellar Spectral Energy Distribution file used

Atmosphere File – Atmospheric model file used

Photopigment File – Photopigment absorption data file used

Stellar Radius (Rs, km) – Radius of the host star

Exoplanet Orbit Semi-Major Axis (sma, km) – Distance between the exoplanet and the host star

Total Absorption Rate (γ_t, s⁻¹) – Overall photon absorption rate across all wavelengths

B Band Absorption Rate (γ_B, s⁻¹) – Absorption rate in the B band

Q Band Absorption Rate (γ_Q, s⁻¹) – Absorption rate in the Q band

B-Q Bands Cut-off (nm) – Wavelength division between B and Q bands

Photosynthetic Photon Flux Density (PPFD, μmol photon m⁻² s⁻¹) – Number of photons available for photosynthesis per unit area and time

Total Stellar Irradiance (S, W m⁻²) – Total incoming stellar energy per unit area


Spectral Data Columns



Col 1: Wavelength (wl, Å) – Wavelength of incident radiation

Col 2: Spectral Flux Density (Fλ, J cm⁻² s⁻¹ Å⁻¹) – Stellar flux at the top of the exoplanet’s atmosphere

Col 3: Atmosphere Transmittance (T, unitless) – Fraction of stellar radiation transmitted through the exoplanet’s atmosphere

Col 4: Pigment Absorption Cross Section (σ_abs, cm²) – Absorption efficiency of the photopigment

Col 5: Spectral Absorption Rate (Γλ, Å⁻¹ s⁻¹) – Rate of photon absorption per unit wavelength


These datasets are intended for use by the scientific community to analyze potential photosynthetic activity under different stellar and atmospheric conditions. The SOF files can support research in astrobiology, exoplanet habitability, and comparative planetology.

For more details, refer to the ExoPhot project documentation at Github or the following publications:



P. Marcos-Arenal, et al., ExoPhot: The photon absorption rate as a new metric for quantifying the exoplanetary photosynthetic activity fitness, Universe 8(12), 624 (2022)

J. García de la Concepción, et al., Phot0, a plausible primeval pigment on earth and rocky exoplanets, Phys. Chem. Chem. Phys., 24, 16979-16987 (2022)
DOI: 10.15468/dl.d6e8vb
title: Occurrence Download

description: A dataset containing 2132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aloe arborescens Mill.",
 "Year 2000-2025"
 ]
}

 The dataset includes 2132 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000021-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5r6def
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiomyia simplex (Loew, 1869)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000022-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.av9hdq
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GbifRegion is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Campuloclinium macrocephalum (Less.) DC.",
 "Year 2020-2025"
 ]
}

 The dataset includes 578 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000023-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcu79m
title: Occurrence Download

description: A dataset containing 5178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is LC",
 "TaxonKey is Papio ursinus (Kerr, 1792)"
 ]
}

 The dataset includes 5178 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000025-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpfuf7
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Living Specimen, Occurrence evidence)",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Satureja montana L.",
 "Year 1980-2025"
 ]
}

 The dataset includes 76 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000026-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2egnb
title: Occurrence Download

description: A dataset containing 976457 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EURISCO, The European Genetic Resources Search Catalogue"
 ]
}

 The dataset includes 976457 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000014-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18758/9f0pca5r
title: Calibrated PDS4 Data from NOMAD on the ExoMars Trace Gas Orbiter

description: This dataset contains all publicly available ExoMars TGO/NOMAD calibrated spectra from the three spectrometers (SO: solar occultation; LNO: nadir; UVIS: solar occultation, nadir and limb).
DOI: 10.57680/asep.0598591
title: Národní knihovna Finska
title: National Library of Finland
title: Národní knihovna Finska - září 2024

description: Dataset vznikl spojením dvou dříve samostatných datasetů obsahujících bibliografické údaje o vybraných materiálech týkajících se literatury. První datový soubor, Fennica, je finská národní bibliografie spravovaná Finskou národní knihovnou. Zahrnuje 206 769 knih od roku 1562 do roku 2021 vydané ve Finsku nebo související s Finskem. Druhý datový soubor, Arto, je referenční databáze finských článků, rovněž vedená Finskou národní knihovnou, která shromažďuje odkazy na články z finských časopisů a novin. Tento datový soubor obsahuje 297 085 článků od roku 1803 do roku 2021. Oba datové soubory byly upraveny tak, aby se zaměřovaly konkrétně na materiály související s literaturou. Při tvorbě datasetu jsou v roli metodického vedení V. Malínek a T. Umerle, zpracování dat provedli D. Perliński a D. Wolczuk.
description: The dataset came about through the merger of two previously separate datasets containing bibliographic data on selected materials concerning literature. The first dataset, Fennica, is the Finnish National Bibliography managed by the National Library of Finland. It includes books published in Finland or related to Finland, encompassing 206 769 books from 1562 to 2021. The second dataset, Arto, is a reference database of Finnish articles, also maintained by the National Library of Finland, which collects references to articles from Finnish journals, magazines, and newspapers. This dataset comprises 297 085 articles from 1803 to 2021. Both datasets have been curated to focus specifically on literature-related materials.
DOI: 10.57906/hvz4-m857
title: Ministry of Justice Data First Probation - England and Wales
DOI: 10.57906/de97-0m89
title: Ministry of Justice Data First Magistrates’ Court Defendant - England and Wales
DOI: 10.15468/dl.rsjr33
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Styrax nicaraguensis subsp. nicaraguensis"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000017-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j63dad
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "Country is South Africa",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is one of (December, January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Podocarpus elongatus (Aiton) L'Herit. ex Pers."
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000027-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jw4kny
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "TaxonKey is Dendroaspis polylepis Günther, 1864",
 "Year 1990-2025"
 ]
}

 The dataset includes 228 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000028-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrrqqy
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is Botanical Database of Southern Africa (BODATSA): Botanical Collections",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Wurmbea Thunb.",
 "Year 2010-2025"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000030-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abncrh
title: Occurrence Download

description: A dataset containing 3405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prunus dulcis (Mill.) D.A.Webb"
 ]
}

 The dataset includes 3405 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000029-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28562831
title: Capolab_Yeh2

description: Capolab_Yeh2 pool: 16S-18S (Yeh et al. 2021) metabarcoding run. Tag combinations will be shared upon publication.
DOI: 10.6084/m9.figshare.28562831.v1
title: Capolab_Yeh2

description: Capolab_Yeh2 pool: 16S-18S (Yeh et al. 2021) metabarcoding run. Tag combinations will be shared upon publication.
DOI: 10.18150/xw0wq7
title: Angle resolved photoluminescence measurements of MAPbI3 metasurface

description: Dataset contains photoluminescence spectra of the MAPbI3 metasurface measured at varying angle, as well as the SEM image of the fabricated metasurface and results of the conducted FDTD simulations.The goal of the project was to design, fabricate and characterize the perovskite metasurface in square 2D lattice arrangement, that can support photonic bound state in the continuum (BIC). The characteristics of the metasurface obtained through angle resolved photoluminescence measurement are in good agreement with theoretical predictions based on FDTD. Please consult the ReadMe.txt file for additional information.
DOI: 10.15468/dl.kcv629
title: Occurrence Download

description: A dataset containing 933208 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Atlas Flora Danica"
 ]
}

 The dataset includes 933208 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000015-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14998180
title: Habitat ground truthing points in Kythros island

description: This layer consists of habitat validation (ground truthing) data collected in the context of "Reposidonia: Mapping Posidonia meadows (1120) in Kythros island, Inner Ionian Archipelago" project. The methodology includes circumnavigation with a boat, snorkelling/apnea and the use of an ROV (Remotelly Operated Vehicle) for bigger depths. The project was implemented by iSea and funded by the CSR donation initiative of “Potamitis Vekris Law Firm”. The final mapping product was produced in collaboration with terraSolutions mer.