cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24541870.v1
title: Supplementary Material for: Ageing affects thymopoiesis and EAE development in a strain-dependent manner

description: Introduction: Considering significance of mechanisms of central tolerance for development of autoimmune diseases, including experimental autoimmune encephalomyelitis (EAE), and suppressive influence of circulating proinflammatory cytokines and alterations in brain-thymus communication characteristic for the central nervous system (CNS) autoimmune diseases, the study was undertaken to identify putative strain-based thymus-related specificities possibly relevant for the opposite effect of ageing on susceptibility of Dark Agouti (DA) and Albino Oxford (AO) rats to EAE. Methods: Quantitative and qualitative changes in thymopoiesis including underlying mechanisms were examined using flow cytometry, and RT-qPCR quantification of mRNAs for molecules relevant for integrity of stroma and T-cell development, respectively. Results: With ageing, differently from DA rats, in AO rats the surface density of CD90, a negative regulator of selection threshold, on thymocytes undergoing lineage commitment was upregulated (consistent with TGF-β expression downregulation), whereas the generation of natural CD4+CD25+Foxp3+ T-regulatory cells (nTregs) was impaired reflecting differences in thymic expression of cytokines supporting their development. Additionally, specifically in old AO rats, in whom EAE development depends on IL-17-producing CD8+ T cells, their thymic differentiation was augmented, reflecting augmented thymic IL-4 expression. In turn, differently from old DA rats developing self-limiting EAE, in age-matched AO rats developing EAE of prolonged duration, EAE development led to impaired generation of nTregs and accumulation of proinflammatory, cytotoxic CD28-CD4+ T cells in the periphery. Discussion: Study indicates that strain-differences in age-related changes in the efficacy of central tolerance, in addition to enhanced thymic generation of CD8+ T cells prone to differentiate into IL-17-producing cells, could partly explain the opposite effect of ageing on DA and AO rat susceptibility to EAE induction. Additionally, it suggested that EAE development leading to a less efficient thymic output of CD4+ cells and nTregs in old AO rats than their DA counterparts could contribute to prolonged EAE duration in AO compared with DA rats. Conclusion: The study warns to caution when designing therapeutic interventions to enhance thymic activity in genetically diverse populations, e.g. humans, and interpreting their outcomes. Furthermore, it indicates that CNS autoimmune pathology may additionally worsen thymic involution and age-related immune changes.
DOI: 10.6084/m9.figshare.26043619.v1
title: Hippopus hippopus <i>de novo</i> transcriptome assembly

description: Includes the <i>de novo </i>transcriptome assembly resources of <i>Hippopus hippopus</i> including filtered and unfiltered assemblies, predicted amino acid sequences, count matrices, and quality metrics
DOI: 10.6084/m9.figshare.28644404.v1
title: Los Angeles Animal Services In-Shelter Bites and Aggregate Shelter Statistics

description: All data pertains to the CITY of Los Angeles Animal Services. The City should not be confused with Los Angeles County which has its own agency (Los Angeles County Animal Care). The Bites file was provided by the city in response to a California Public Records Act request. It contains information on dog bite reports in animal shelter facilities. While the period covered is not precisely defined, the range of bite dates is August 26, 2015 - February 26, 2023.The Statistics file is a compendium of shelter statistics retrieved from the website https://www.laanimalservices.com/woof-report to facilitate the analysis of the bite data. Each year contains the year-end numbers of the prior year, and these differ (negligibly) from the numbers originally reported for that prior year, presumably because of corrections in the database. The revised numbers are presumed to be more accurate.<br>
DOI: 10.6084/m9.figshare.29046401.v1
title: EU Parliament amendment proposals for Stop-the-Clock Directive

description: EU Parliament amendment proposals for Stop-the-Clock Directive
DOI: 10.17632/nk4tttpzyy
title: Tensile and microstructural properties of SiC micro-particle reinforced AZ91 composites for application in light-vehicle and aerospace industries: Dataset

description: The data is composed of 11 columns and 85 rows. It is a small dataset but was specific to research on SiC reinforced AZ91 that is growing. Data was obtained from recent research publications on the same area. The provided data summarizes the mechanical properties of various aluminum-silicon carbide (Al-SiC) composites, subjected to different treatments. The treatments include homogenization with T6 heat treatment, Equal Channel Angular Pressing (ECAP), rolling, ECAP combined with rolling, and hot extrusion. The volume percentage of SiC ranged from 0.5% to 30%, with SiC particle sizes varying from 0.2 to 105 micrometers. The average grain size of the composites was between 0.74 and 14 micrometers. Mechanical properties such as yield strength (YS), ultimate tensile strength (UTS), total percentage elongation, and Young's modulus (E) were measured, showing a wide range of values: YS from 83 to 515 MPa, UTS from 95.1 to 622 MPa, elongation from 0.5% to 18.3%, and E from 40.2 to 159.6 GPa. These variations indicate the significant impact of SiC content, particle size, and treatment on the composites' properties. The data is sourced from research articles published between 2015 and 2024, with digital object identifiers (DoIs) provided for further reference.
DOI: 10.6084/m9.figshare.3565752.v1
title: Appendix K. Ordination diagram of principal components analysis on bacterial and fungal denaturing gradient gel electrophoresis profiles of Poa annua rhizosphere samples.

description: Ordination diagram of principal components analysis on bacterial and fungal denaturing gradient gel electrophoresis profiles of Poa annua rhizosphere samples.
DOI: 10.26188/5da551a4afce4
title: EPiC database - Aluminium composite panel

description: This material is part of the free Environmental Performance in Construction (EPiC) Database. The EPiC Database contains embodied environmental flow coefficients for 250+ construction materials using a comprehensive hybrid life cycle inventory approach.<br><br>Aluminium composite panels consist of a layer of foam insulation, sandwiched between two aluminium sheets. Aluminium sheets are chosen for their durability, resistance to corrosion, large colour palette and strength. The foam is typically polyethylene or polyurethane.<br><br>Rolled aluminium coils are used to sandwich the foam insulation, which is also fed to the manufacturing line as a roll. Adhesives are used to glue the aluminium sheets to the core.<br><br>Aluminium composite panels are typically used as cladding. The panel specified here is 4 mm thick.
DOI: 10.6084/m9.figshare.24922479.v1
title: The final version of genome assemblies and annotations

description: The final version of genome assemblies and annotations.
DOI: 10.6084/m9.figshare.25844290.v1
title: tmall.zip

description: <pre>This dataset is collected from Tmall, one of the largest e-commerce platforms in China. It contains 41,738 users and 11,953 items with 4 types of behaviors.</pre>
DOI: 10.6084/m9.figshare.7728620.v2
title: Meningitis pGWAS results

description: Summary statistics for association between genetic variation and meningitis phenotypes. Contains pathogen genome association (pGWAS.tar.bz2).<br>Unpack with `tar xf `. Contents are described in the README.
DOI: 10.17632/693vfyxg2c
title: Pengaruh Manajemen Ekstrakurikuler terhadap Hafalan Hadits Arba’in Siswa Kelas VI di MIS Darul ‘Ilmi Desa Karang Jaya Teras Terunjam

description: Tujuan Penelitian: untuk mempelajari dan mengevaluasi manajemen ekstrakurikuler di MIS Darul ‘Ilmi secara menyeluruh dan mendalam, dengan penekanan khusus pada tiga elemen utama: menganalisis secara sistematis pelaksanaan dan pengelolaan kegiatan ekstrakurikuler di madrasah, menemukan dan mengukur tingkat pencapaian hafalan Hadits Arba'in pada siswa kelas VI, dan dan ketiga, mencari tahu bagaimana manajemen ekstrakurikuler dan kemampuan hafalan Hadits Arba'in berkorelasi dan berdampak besar.
Metode Penelitian: metodologi kuantitatif dengan desain deskriptif korelasional. Penelitian dilakukan di MIS Darul 'Ilmi, Desa Karang Jaya, Teras Terunjam, Mukomuko, Bengkulu. Penelitian ini melibatkan 11 siswa dari kelas VI dengan teknik sampling jenuh atau total. Teknik Pengumpulan Data menggunakan angket, tes, observasi wawancara, dan dokumentasi. Teknik Analisis Data dengan dua pendekatan yaitu analisis deskriptif dan analisis statistik inferensial.
Hasil Penelitian: Hasil penelitian yang diperoleh pada ada atau tidaknya pengaruh manajemen ekstrakurikuler terhadap hafalan hadits arba’in terdapat hubungan serta pengaruh yang positif dan signifikan yaitu sebesar 37,21%. Artinya pada kegiatan ekstrakurikuler manajemen diperlukan dan berperan penting dalam proses pelaksanaannya dari segi perencanaan sampai evaluasi.
DOI: 10.6084/m9.figshare.13498398.v1
title: Supporting information for Reply to comment by Zhao et al. on “Paleomagnetism of the Late Cretaceous red beds from the far western Lhasa terrane: Inclination discrepancy and tectonic implications”

description: This supporting information contains further illustrations of sampling units (Text S1), photographs showing field outcrops of the Tangza Formation and Jingzhushan Formation (Figure S1), and results of stepwise unfolding of the mean direction from 54 sites in stratigraphic coordinates (Table S1).
DOI: 10.6084/m9.figshare.20767777.v1
title: Genome sequence assembly of the Brazilian mangaba fruit (Hancornia speciosa)

description: A genome sequence assembly of the Brazilian mangaba fruit (Hancornia speciosa). We generated raw subreads using Pacbio Sequel II from DNA extracted out of a single individual. Canu v1.8 pipeline was used to perform read correction and read trimming resulting in nearly 50x sequencing coverage of the expected haploid DNA content of 430 Mb. Unitig construction resulted in a total of 3,447 consensus sequences larger than 5kbp, totaling 417 Mbp with NG50 value of 0.66 Mbp. This dataset contains the FASTA formatted file and basic sequence-level statistics calculated on the basis of the script assemblathon_stats.pl (github.com/ucdavis-bioinformatics/assemblathon2-analysis) and some metadata on sequences generated by the Canu program.
DOI: 10.6084/m9.figshare.25398895.v7
title: Data related to the identification and genomic characterisation of egoviruses

description: Databases our study used or generated include (1) supplemental tables, (2) Egovirales RNApolA proteins and major capsid proteins (MCPs) identified from the metagenomic survey, (3) HMMs for hallmark genes of Nucleocytoviricota, (4) HMMs for the core genes and single copy core genes of Egovirales, (5) all the Egovirales MAGs (including complete genomes), (6) and finally the PDB of the DJR-MCP of Egovirales (human main clade).
DOI: 10.6084/m9.figshare.26247149.v1
title: Supplementary Material for: Nephroblastoma in older adult. Case Report and review of literature

description: Abstract
Introduction: Nephroblastoma, or Wilms' tumor, is a malignant renal neoplasm commonly found in children, is extremely rare in adults representing only 0.5% of all renal neoplasms. Adult Wilms tumor is rare, to our knowledge fewer than 300 cases have been reported in the English literature to date. However, in older adults after 60 years of age, only less than 45 cases have been reported. For this reason, treatment guidelines in adults still are lacking. Prognosis in nephroblastoma for adult patients is found to be worse than in children. 
Case presentation: We report the case of a 65-year-old female with lumbar fossa mass, flank pain and hematuria, and pathologic diagnosis of Wilms tumor. We performed nephrectomy. No adjuvant treatment was given. Our patient remains asymptomatic and without evidence of recurrence 12 months after the surgery.
Conclusion: Nephroblastoma in the elderly presents different clinical behavior and prognosis compared to nephroblastoma in children.
DOI: 10.6084/m9.figshare.28327310.v1
title: Direct Synthesis of N-Trifluoromethyl Amides via Photocatalytic Trifluoromethylamidation

description: Fig. 1. | Known methods for the synthesis of N-CF3 amides & our work design.
Fig. 2. | Screening and synthesis of novel N-CF3 amidyl radical precursors.
Fig. 3. | Trifluoromethylamination of (hetero)arenes
Fig. 4. | Extended applications of radical trifluoromethylaminations.
Fig. 5. | Radical aryltrifluoromethylaminations of alkenes/alkynes
Fig. 6. | Plausible reaction mechanism & DFT studies.
DOI: 10.6084/m9.figshare.8869253.v1
title: Reemeyer and Rees supplement

description: This zip folder contains the R script and data associated with Reemeyer and Rees (<i>in prep</i>), Standardizing the determination and interpretation of <i>P<sub>crit</sub> </i>in fishes. <br>Running the entire R script will generate the figures and tables mentioned in the manuscript.
DOI: 10.17632/c4vnshd75x
title: Media Framing of Islam in the Coverage of Terrorism in Kenya

description: This data analysed the media framing of Islam in the subsequent coverage of the 2015 Garissa University terror attack in Kenya using framing theory. A quantitative research approach and descriptive content analysis research design was adopted from the Daily Nation and The Standard newspapers. Data was captured from 3rd April 2015 to 10th April 2015, where 112 stories were selected for analysis. Specifically, the research sought to determine the tone of Islam in subsequent coverage of the Garissa University terror attack during the first seven days. Secondly, it examined the prominence of stories touching on Islam during subsequent coverage of the Garissa University Terror Attack in the first seven days. Third, it examined sources in subsequent coverage of the Garissa University terror attack in the first 7 days. The study found that the two newspapers framed Islam in a neutral tone during the subsequent coverage of the Garissa University terror attack. This is a significant deviation from past studies that established Islam is negatively framed during newspaper coverage of terror attacks. The study also found out that the two newspapers gave stories with a religious connotation a higher prominence. Further, the study established that official sources, including security agencies and government officials, were the main sources in subsequent coverage of the Garissa University attack. The study concludes that Kenyan media has moved from a negative to a neutral tone when covering Islam during terror attacks. It also deduces that stories touching on Islam were highly prioritised, drawing a higher prominence. Also, despite official sources appearing predominantly in the initial coverage, there was a shift towards non-official sources during the subsequent coverage. The study recommends that media houses fortify training in terrorism reporting and writing skills and that stakeholders emphasise ethics during coverage of terror attacks in Kenya.
DOI: 10.17632/h6y87fs5rb
title: Benchmark dataset and results for a Real-World Warehouse Optimization Problem

description: This benchmark includes the input instances and results shown in the paper Exploring Utility for a Real-World Warehouse Optimization Problem: Formulation Based on Quantun Annealers and Preliminary Results.

INPUT

In order to properly find feasible solutions to the Warehouse Optimization Problem, the information is provided through a text file, considering the main information about i) the pool of locations available, ii) the amount of items per category, and iii) the characteristics of each item type.

OUTPUTS

For each result, the following information is provided: i) the solution itself, in which the location and the height are provided for each item; ii) a list representing the types of all items; iii) the cumulated storing time of all the solutions; iv) the number of items that remain unstacked (it should always be 0); and v) the remaining surface in the available locations.

Contact Eneko Osaba (eneko.osaba@tecnalia.com) for further information about the format of the data and the results.
DOI: 10.17632/wnf5jwzp3c
title: Dataset on Helically Coiled Oscillating Heat Pipe (HCOHP)

description: This dataset contains raw primary temperature data obtained from the three HCOHPs charged with ethanol, methanol, and deionized water respectively and tested in the laboratory using three different heat inputs. The maximum heat input element temperatures were 100°C, 125°C and 192°C, for test Run 1, 2 and 3, respectively. The temperature data were obtained from three Omega K-type thermocouples attached to each condenser and evaporator of the HCOHP respectively, two attached to the adiabatic sections, and two attached to the inner and outer surfaces of the cylindrical copper vessel for the heat transfer. The other dataset is derived from the average temperatures from the raw primary temperature data. Here, relevant equations for the determination of the heat flux, power input, thermal contact resistance and overall thermal resistance was used. The data are presented on six separate Excel files. The first three files are captioned HCOHP Primary Data – Run 1, HCOHP Primary Data – Run 2, and HCOHP Primary Data – Run 3 representing raw primary temperature data for the three HCOHPs for each test run. The second three Excel files are captioned HCOHP Derived Data – Run 1, HCOHP Derived Data – Run 2, and HCOHP Derived Data – Run 3 represent the derived data obtained from the average raw primary temperature data for each test run. In the Excel files EOHP, MOHP and WOHP represents the ethanol charged HCOHP, methanol charged HCOHP and deionized water charged HCOHP, respectively.
DOI: 10.6084/m9.figshare.27058681.v1
title: Analysis of Core Area Characteristics in Travel Networks Using Block Modeling

description: This study analyzed regional travel patterns, network structures, and core areas using origin-destination (OD) data based on travel volume, to aid policies that address the concentration of resources in South Korea’s capital region. To identify the differences between passenger and freight travel, the functional regional structure of the network was analyzed using block modeling, while weighted centrality was examined to extract core cities from a polycentric urban perspective. Additionally, a multiple regression analysis was conducted to compare the factors influencing the core areas of passenger and freight flows. The findings are as follows: (1) Freight travel is more active between regions compared with passenger travel, suggesting that freight travel primarily relies on long-distance movement. (2) For passenger travel, geographically central cities emerged as core areas, whereas for freight travel, peripheral cities were identified as the major hubs. (3) Passenger travel was influenced by regional characteristics, industry, and infrastructure, whereas freight travel was primarily affected by regional characteristics, infrastructure, and land use patterns. Particularly, population density and industrial facilities significantly impacted both passenger and freight travel. Therefore, this study highlights the distinct characteristics of passenger and freight travel, offering insights to promote balanced development.
DOI: 10.6084/m9.figshare.6917444.v1
title: Glacial dispersal trains in North America

description: A map depicting glacial dispersal trains in North America has been compiled from published sources. It covers the Canadian Shield, the Arctic Islands, the Cordillera and Appalachian mountains, and Phanerozoic sedimentary basins south of the Shield. In total, 140 trains are portrayed, including those emanating from major mineral-deposit types (e.g. gold, base metal, diamondiferous kimberlite, etc.). The map took 10 years of on-and-off work to generate, and it culls data from over 150 years of work by government, industry, and academia. It provides a new tool to help companies find ore deposits in Canada: the trains are generally a better predictor of dispersal distance and direction than striations and streamlined landforms, the data typically depicted on surficial-geology maps, including the Glacial Map of Canada. It also gives new insight into sedimentation patterns and processes beneath ice sheets, a sedimentary environment that, because of its inaccessibility, remains poorly understood and controversial.
DOI: 10.6084/m9.figshare.8980586.v1
title: Comparative transcriptome profiling of immune response against Vibrio harveyi infection in Chinese tongue sole. (The DEGs presented by the Venn diagram)

description: <i>Vibrio harveyi</i>is a major bacterial pathogen that causes fatal vibriosis in Chinese tongue sole (<i>Cynoglossus semilaevis</i>), which have resulted in huge mortalities in the farming industry. However, the molecular mechanisms of <i>C. semilaevis</i>response against <i>V. harveyi </i>infection is poorly understood. Here, we performed transcriptome analysis of <i>C. semilaevis</i>between resistant family and susceptible family under <i>V. harveyi</i>challenging and control conditions.
DOI: 10.6084/m9.figshare.11717895.v1
title: Contig 9 - potential Lonepinella koalarum plasmid

description: The genome assembly of this Lonepinella koalarum strain resulted in a circular contig that was similar to plasmids in related bacterial taxa when blasted on GenBank.
DOI: 10.6084/m9.figshare.14771001.v1
title: Supplemental data for "Assessing congruence among gene trees with polytomies using overall success of resolution for coalescent analyses"

description: Supplemental data for "Assessing congruence among gene trees with polytomies using overall success of resolution for coalescent analyses"
DOI: 10.6084/m9.figshare.19581532.v2
title: Executive Function Data Adults

description: These datasets show: 1) the executive function outcome measures assessed with eFun and the traditional executive function tasks for adults. 2) The compraison of eFun performance between adults and children (studies 1 and 2).
DOI: 10.6084/m9.figshare.27877542.v1
title: Open Access Data: Soil change after planting longleaf pine on agricultural lands: Revisiting a chronosequence study after 23 years

description: To inform questions about carbon (C) storage and nutrient status, we repeated measurements of mineral soil total C, total nitrogen (N), and extractable phosphorus (P) on a chronosequence of replicated (<i>n</i> = 3) planted longleaf pine stands of various age classes. We also repeated measurements of soil C and nutrients in three never-tilled naturally regenerated stands dominated by longleaf pine. The study site was located at The Jones Center at Ichauway in southwestern Georgia, USA, which is in the Gulf of Mexico coastal plain (31°19ʹN, 80°20ʹW).
DOI: 10.6084/m9.figshare.27924426.v4
title: Data for Shima Cave samples.xlsx

description: Stalagmite oxygen isotope data (δ<sup>18</sup>O and Δʹ<sup>17</sup>O) for samples (SM9, SM12, SM16 and SM17) from Shima Cave, Hunan Province, central China.
DOI: 10.6084/m9.figshare.3563604.v1
title: Appendix A. Order-specific adult vs. offspring size comparisons and adult vs. adult/offspring size comparisons.

description: Order-specific adult vs. offspring size comparisons and adult vs. adult/offspring size comparisons.