cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17639632
title: Data for 'Physical fitness is negatively associated with DNA methylation-based risk of aging-related diseases'

description: This is the code and data for the article titled 'Physical fitness is negatively associated with DNA methylation-based risk of aging-related diseases'.

To run this code, you have two options:



the first option is to run all the code steps using the notebook 'full_code.ipynb'.

the second option is through multiple python code snippets.


To run this code using the multiple python code snippets, you can follow this order:

1) calculate_predictor_episcore_correlations.py

2) map_to_diseases.py

3) patient_level_disease_risk_estimation.py

4) top_10_patients.py

This code expects the following input files:

1) Generated episcores for the patients (.xlsx file)

2) Episcore_mapping (.csv file)

3) The 5 fitness predictors (VO₂max, GripStrength, JumpMax, BMI, and cognition) and confounders which are Age and Sex (coded where 1 = male and 0 = female)

4) Episcore-disease hazard ratio values from Gadd et al reference paper supplementary file, sheet 1J

And it outputs the following data files:

1) Significant correlations found of fitting OLS model to the predictor-episcore dataset after adjusting for Sex and Age, Association is considered significant if p-value < 0.05 ('significant_results.xlsx').

2) The results of mapping previous table to the diseases ('Predictors_diseases.xlsx'), note that this table is used to produce the tripartite figures.

3) The results of Patient-Level Disease Risk Estimation for patients across 10 diseases, and categorizing fitness predictors as low, normal and high ('df_high_risk.xlsx').

4) The top 10 patients with the highest number of flagged diseases ('top_10_high_risk_patients_all_data.xlsx').
DOI: 10.17605/osf.io/w74nk
title: A Contemporary Systematic Review and Pooled Analysis of 991 Children with Pancreatic Tumors

description: We aimed to perform a systematic literature review to describe the clinical characteristics, management, and outcomes of children with pancreatic tumors.
DOI: 10.7910/dvn/nmwosg
title: Replication Data for: Bureaucracy, Happiness, and Satisfaction At Work

description: Despite increasing material prosperity, industrialized nations face declining self-reported happiness and increasing workplace dissatisfaction. This study investigates bureaucratic burden as a driver of diminishing job satisfaction, analyzing 7.9 million Glassdoor reviews of more than 8,000 companies from 2008-2023 using natural language processing and instrumental variables methods. We identify reviews mentioning bureaucracy and quantify their association with 1-5 star employer ratings. Mentioning bureaucracy corresponds to around 0.7-point lower ratings (a 22% decline from the mean), comparable to the impacts of mentioning low pay (-0.8) or workplace conflict (-0.9). Two-stage least squares analysis, instrumenting with future bureaucratic mentions at the same company, implies a causal relationship. These findings support theories about the harm of ``illegitimate tasks'' at work and suggest revisiting conventional efficiency rationales for workplace bureaucratization. Organizational practices emphasizing employee autonomy and meaningful tasks could partly mitigate declines in satisfaction.
DOI: 10.17026/ar/ea3bae
title: PAN-00175285 - pinch lead

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00175285&lt;/p&gt;
description: Modified: 2025-06-23T12:19:48+02:00
DOI: 10.15468/dl.kthsk2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1840",
 "Year is less than or equal to 1849"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023366-251120083545085/datasets/export for details.
DOI: 10.21227/nc9b-sk38
title: "PubMed: EQ-5D"

description: "PubMed search (Oct 13, 2022) using EuroQoL filter yielded 15,547 EQ-5D records (1990\u20132022); 200 randomly sampled via Stata, full-text reviewed by two experts for binary labeling (EQ-5D data: true\/false) based on metadata."
DOI: 10.17605/osf.io/ae25w
title: Knowledge Test Confidence Data

description: This repository provides the Knowledge Test Confidence (KTeC) data set presented in the paper "A Normative Model for Bayesian Combination of Subjective
Probability Estimates" by Susanne Trick, Constantin A. Rothkopf, and Frank Jäkel. The paper was published in Judgment and Decision Making.
Please cite the paper when using the data:
Trick, S.; Rothkopf, C.A.; Jäkel, F. (2023). A Normative Model for Bayesian Combination of Subjective Probability Estimates. Judgment and Decision Making, 18, E40.
Link to the paper: https://doi.org/10.1017/jdm.2023.39
DOI: 10.7910/dvn/jhyavq
title: Replication Package for: Beliefs, Information Sharing, and Mental Health Care Use Among University Students

description: Replication Package for the JDE paper "Beliefs, Information Sharing, and Mental Health Care Use Among University Students"
description: https://doi.org/10.1016/j.jdeveco.2025.103646
DOI: 10.17605/osf.io/7j8kf
title: Marxist Average Rate of Profit for United States (1960-2020) with Documentation

description: Data required and calculation process of the Marxist Gross and Net Average Rate of Profit (unweighted and weighted by added value) using the Input-Output Tables of the United States from 1960 to 2020. The docx file is the complete documentation.
DOI: 10.17605/osf.io/zny3t
title: The next station: Chunking of DEĞİL ‘not’ collocations in Turkish Sign Language

description: More recently, grammaticalization theorists have become increasingly aware of the role of collocations in grammatical development. One of these roles is to define phonetic reductions and fusion in frequent collocations as constructionalization. Based on frequency of occurrences, the present study explores the implications of high-frequency collocations in Turkish Sign Language for grammaticalization and offers a novel account of constructional change of DEĞİL ‘not’ on usage-based grounds. Specifically, the study suggests that (i) the chunking process is not language-specific within the spoken modality, as noted previously in the literature, (ii) the frequency of collocations is strongly correlated with phonetic reduction and duration, (iii) the fusional characteristics of [sign + DEĞİL] collocations can be classified under four reduced constructional schemas, (iv) the monosyllabicity of a scheme appears to be criterion for it to be productive in signed modality and (v) the semantic changes of frequent [sign + DEĞİL] collocations are related to the notion of subjectification in TİD.
DOI: 10.15468/dl.4nd4sp
title: Occurrence Download

description: A dataset containing 32970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eschrichtius robustus"
 ]
}

 The dataset includes 32970 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023367-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/c9ys4
title: NEONATAL SEPSIS IN A TERTIARY HEALTH FACILITY IN GHANA

description: The current study sought to ascertain the prevalence of neonatal sepsis and associated factors based on analysis of institutional records from Cape Coast Teaching Hospital (CCTH) in Ghana. The study involved a retrospective cross-sectional review of randomly sampled medical records of 360 neonates CCTH from January 2018 to December 2021. Descriptive proportions and binary logistic regression analysis were conducted to estimate the prevalence of neonates with sepsis and associated factors.
DOI: 10.15468/dl.r27hyu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1850",
 "Year is less than or equal to 1859"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023368-251120083545085/datasets/export for details.
DOI: 10.17026/ar/n3ueal
title: PAN-00106123 - coin/coin-related, Burgeroorlog (Galba ?), denarius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00106123&lt;/p&gt;
description: Modified: 2025-07-07T08:56:01+02:00
DOI: 10.17605/osf.io/syht9
title: HQ-DLHM-OD-Database

description: Among modern digital microscopy techniques, Digital Lensless Holographic Microscopy (DLHM) is one of the most straightforward label-free coherent imaging approaches. However, being lensless technique demands a two-step coherent imaging process to recover the object under study information; the usability of the method is commonly hindered by the need for opto-digital postprocessing of the recordings, both for retrieving the information of interest and its display adaptation to the user’s needs.
Integrating artificial intelligence (AI) and machine learning (ML) solutions into DLHM to develop automated detection systems and quality enhancement models is a promising field of application that can bridge the gap between the technique output and the user’s expectations. Nonetheless, the achievable performance of these models is directly limited by the quality and scope of the database employed in their training. Preparing a large, comprehensive, and high-quality DLHM dataset remains a difficult challenge to achieve the said solutions.

This work presents a high-quality open-source dataset of DLHM recordings and the needed information for its reconstruction. The database comprises 11720 4640x3506 holograms recorded with an 8-bit monochromatic camera supported by an MN34230 sensor with a 3.8 um pixel size. Laser diodes of 405 nm, 510 nm, and 654 nm were employed to record a diversity of biological and non-biological samples described in the dataset. A .csv file containing all the main recording parameters, the distance between the point source and the sample plane, and the illumination wavelength is added to the presented dataset folders.
DOI: 10.17026/ar/lgoujo
title: PAN-00108368 - coin/coin-related, Militair muntatelier (van Vitellius ?) , denarius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00108368&lt;/p&gt;
description: Modified: 2025-06-17T08:19:13+02:00
DOI: 10.17605/osf.io/nq7at
title: LDP Project - Chapter 2

description: class mini project - Using Chapter 2 of thesis
DOI: 10.15468/dl.auhyy5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1860",
 "Year is less than or equal to 1869"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023370-251120083545085/datasets/export for details.
DOI: 10.15785/sbgrid/1230
title: X-Ray Diffraction data from Rv0097 with 5mM CADA soaked, source of 9PC5 structure

description: Native dataset
DOI: 10.17026/ar/fhm1gb
title: PAN-00078391 - late medieval/early-modern rectangular mount (belt)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00078391&lt;/p&gt;
description: Modified: 2025-08-15T12:19:57+02:00
DOI: 10.15468/dl.h7fv68
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anoplius tenebrosus"
 ]
}

 The dataset includes 232 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023371-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr8dy5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1870",
 "Year is less than or equal to 1879"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023372-251120083545085/datasets/export for details.
DOI: 10.17605/osf.io/hftq2
title: Spatial CRC Atlas

description: Data associated with the manuscript "Molecular cartography uncovers evolutionary and microenvironmental dynamics in sporadic colorectal tumors" (http://dx.doi.org/10.1016/j.cell.2023.11.006)
DOI: 10.15468/dl.3d3cm7
title: Occurrence Download

description: A dataset containing 4458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.64031 4.47961,-75.64145 4.46594,-75.62348 4.46424,-75.62017 4.47508,-75.62329 4.49035,-75.63246 4.48884,-75.64031 4.47961))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4458 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023373-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/46qxto
title: PAN-00150595 - grindstone/whetstone

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00150595&lt;/p&gt;
description: Modified: 2025-07-10T11:13:05+02:00
DOI: 10.5281/zenodo.17795824
title: Gravitational Force-Line Ribbons: Geometric Origin of Rotation Effects, Resolution of Precision Anomalies - RJW

description: For 300 years we drew gravitational force lines as perfect radial threads — an idealisation valid only for non-rotating masses. In reality, every mass that has ever produced gravity — from Earth to neutron stars to galaxies — rotates. That rotation does not merely “perturb” the lines. It shears them into ribbons.

This six-page paper proves that the ribbon deformation — with half-width exactly equal to the local centrifugal potential divided by g — is not an approximation. It is the missing physics.

From that one parameter-free equation flow, with merciless precision:



Exact Foucault precession to 10 decimal places (no fictitious forces, ever)

The long-mysterious 0.6 µrad sidereal-locked phase drift seen only in LIGO-Hanford’s east-west arm — solved as the integrated ribbon tilt

A brand-new, never-searched-for 1.9 × 10⁻¹¹ sidereal-daily oscillation in every east-west gravimeter on Earth — detectable tomorrow with existing superconducting instruments

A derivation of Newton’s gravitational constant G = 6.67430 × 10⁻¹¹ m³ kg⁻¹ s⁻² directly from Earth’s measured rotation and radius, using only one quantum input: the +2.5 × 10⁻⁹ renormalization of h already forced independently by every LIGO binary black-hole ringdown since 2015

Closure of GPS clock residuals, GRACE-FO/GOCE zonal bands, and binary-pulsar periastron anomalies — all with the same single correction


The same ribbon topology that eliminates fictitious forces in classical mechanics simultaneously reaches down to the Planck scale and up to cosmological rotation curves, overdetermining G at every step with no free parameters.

This is not a modification of general relativity or quantum gravity. It is the realisation that rotation has been the hidden variable all along.

The central prediction — the 1.9 × 10⁻¹¹ sidereal gravimetry signal — is large, clean, and falsifiable in weeks by any laboratory possessing an FG5-X or gPhone gravimeter. A null result kills the theory. A positive detection rewrites textbooks.

The ribbon has been loosed. Physics will never look the same.

Robert J. Weber 2 December 2025 DOI: 10.5281/zenodo.17795825

(Independent researcher. No institutional affiliation. No funding. Just one equation that refused to stay quiet.)
DOI: 10.5281/zenodo.17795825
title: Gravitational Force-Line Ribbons: Geometric Origin of Rotation Effects, Resolution of Precision Anomalies - RJW

description: For 300 years we drew gravitational force lines as perfect radial threads — an idealisation valid only for non-rotating masses. In reality, every mass that has ever produced gravity — from Earth to neutron stars to galaxies — rotates. That rotation does not merely “perturb” the lines. It shears them into ribbons.

This six-page paper proves that the ribbon deformation — with half-width exactly equal to the local centrifugal potential divided by g — is not an approximation. It is the missing physics.

From that one parameter-free equation flow, with merciless precision:



Exact Foucault precession to 10 decimal places (no fictitious forces, ever)

The long-mysterious 0.6 µrad sidereal-locked phase drift seen only in LIGO-Hanford’s east-west arm — solved as the integrated ribbon tilt

A brand-new, never-searched-for 1.9 × 10⁻¹¹ sidereal-daily oscillation in every east-west gravimeter on Earth — detectable tomorrow with existing superconducting instruments

A derivation of Newton’s gravitational constant G = 6.67430 × 10⁻¹¹ m³ kg⁻¹ s⁻² directly from Earth’s measured rotation and radius, using only one quantum input: the +2.5 × 10⁻⁹ renormalization of h already forced independently by every LIGO binary black-hole ringdown since 2015

Closure of GPS clock residuals, GRACE-FO/GOCE zonal bands, and binary-pulsar periastron anomalies — all with the same single correction


The same ribbon topology that eliminates fictitious forces in classical mechanics simultaneously reaches down to the Planck scale and up to cosmological rotation curves, overdetermining G at every step with no free parameters.

This is not a modification of general relativity or quantum gravity. It is the realisation that rotation has been the hidden variable all along.

The central prediction — the 1.9 × 10⁻¹¹ sidereal gravimetry signal — is large, clean, and falsifiable in weeks by any laboratory possessing an FG5-X or gPhone gravimeter. A null result kills the theory. A positive detection rewrites textbooks.

The ribbon has been loosed. Physics will never look the same.

Robert J. Weber 2 December 2025 DOI: 10.5281/zenodo.17795825

(Independent researcher. No institutional affiliation. No funding. Just one equation that refused to stay quiet.)
DOI: 10.15468/dl.5hekgk
title: Occurrence Download

description: A dataset containing 1184412 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 1184412 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023363-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fneujw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1880",
 "Year is less than or equal to 1889"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023375-251120083545085/datasets/export for details.
DOI: 10.7910/dvn/qoo75g
title: T2W Atlas

description: CRL2025 T2W Atlas and Segmentations&lt;br&gt;&lt;br&gt;

This is a spatio-temporal map of the developing fetal brain, from gestational age (GA) weeks 21 to 37, made from 193 reconstructed fetal T2-weighted brain images. Included are two sets of image segmentations: tissue segmentations with delineated borders between white and cortical gray matter (cortical plate), and regional parcellations which overlap the white-gray matter border. The tissue segmentation is further divided into two versions, one which splits white matter into subplate and intermediate zone (white matter zones; WMZ), and one that does not. WMZ segmentations are only supplied up to 32 weeks gestational age.&lt;br&gt;&lt;br&gt;

Contents:&lt;br&gt;
t2w_GA*_atlas.nii.gz - T2-weighted atlas images&lt;br&gt;
t2w_GA*_tissue.nii.gz - Tissue segmentations&lt;br&gt;
t2w_GA*_tissueWMZ.nii.gz - Tissue segmentation with white matter zone division&lt;br&gt;
t2w_GA*_regional.nii.gz - Regional parcellation&lt;br&gt;
T2WAtlas_labelkey-tissue.txt - Label key for tissue segmentation&lt;br&gt;
T2WAtlas_labelkey-region.txt - Label key for regional segmentation&lt;br&gt;&lt;br&gt;

Label keys can be loaded in ITK-SNAP&lt;br&gt;&lt;br&gt;

Files in this data release were developed for research purposes and are not intended for medical or diagnostic use and have no warranty. The authors and distributors do not make any guarantees regarding the accuracy or usefulness of results generated from these tools or their derivatives and are not liable for any damages resulting from their use.&lt;br&gt;&lt;br&gt;

Through this data use agreement, you agree to cite the DOI referring to this resource as well as the following papers:&lt;br&gt;&lt;br&gt;
Bagheri, M., Velasco-Annis, C., Wang, J., Faghihpirayesh, R., Khan, S., Calixto, C., Jaimes, C., Vasung, L., Ouaalam, A., Afacan, O. and Warfield, S.K., 2025. An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis. arXiv preprint arXiv:2508.15034.&lt;br&gt;
Gholipour, A., Rollins, C.K., Velasco-Annis, C. et al. A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Sci Rep 7, 476 (2017). https://doi.org/10.1038/s41598-017-00525-w&lt;br&gt;&lt;br&gt;

T2-weighted image reconstructions were performed using MIRTK construct-atlas:&lt;br&gt;
Schuh et al., “Unbiased construction of a temporally consistent morphological atlas of neonatal brain development”, bioRxiv, 2018. doi:10.1101/251512