cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14322802.v1
title: Regression of dark color in subterranean fishes involves multiple mechanisms: response to hormones and neurotransmitters

description: ABSTRACT Organisms with source-populations restricted to the subterranean biotope (troglobites) are excellent models for comparative evolutionary studies, due to their specialization to permanent absence of light. Eye and dark pigment regression are characteristics of most troglobites. In spite of the advance in knowledge on the mechanisms behind eye regression in cave fishes, very little is known about pigmentation changes. Studies were focused on three species of the genus Pimelodella. Exemplars of the troglobitic P. spelaea and P. kronei were compared with the epigean (surface) P. transitoria, putative sister-species of the latter. Melanophore areas and densities are significantly lower in the troglobitic species. Evaluating the in vitro response of these cells to adrenaline, acetylcholine and MCH, we observed a reduced response in both troglobites to adrenaline. The same trend was observed with MCH, but not statistically significant. No response to acetilcholine was detected in all the three. Contrary to expectations, even though eye-regression in P. spelaea was much lower than in P. kronei, pigmentation regression was more advanced. Multiple mechanisms of loss showing a mosaic of traits in troglobitic fishes are discussed here.
DOI: 10.6084/m9.figshare.14322810.v1
title: Genetic evidence supports polygamous mating system in a wild population of Prochilodus lineatus (Characiformes: Prochilodontidae), a Neotropical shoal spawner fish

description: ABSTRACT Behavioral observations made on fish have revealed remarkably diverse reproductive strategies, including polygamy by both sexes. Still, to date, most Neotropical species remain unstudied as to whether the observed reproductive behavior in natural populations correlates with their genetic mating systems. Here, we investigated the genetic mating system of a wild population of Prochilodus lineatus settled in the Middle Uruguay River basin. By using sibship reconstruction and parental inference methods based on microsatellites’ genotypes, we inferred 45 females and 47 males as potential parents of the 87 larvae analyzed. We found evidence supporting polygamous mating in both sexes: while a high percentage of males (44.7%) fertilized the eggs of one female, 55.3% of the inferred males fertilized eggs of up to four females. Likewise, while 44.5% of the inferred females had their eggs fertilized by one only male, 55.5% of females were fertilized by multiple males. The estimated proxy of the effective population size (Nb) was 126, exhibiting moderate to high levels of genetic diversity. The genetic evidence contributed in this study complements earlier behavioral observations of formation of spawning nuclei of aggregating breeders, which may be promoting a polygamous mating strategy in this long-distance migratory fish.
DOI: 10.6084/m9.figshare.14322810
title: Genetic evidence supports polygamous mating system in a wild population of Prochilodus lineatus (Characiformes: Prochilodontidae), a Neotropical shoal spawner fish

description: ABSTRACT Behavioral observations made on fish have revealed remarkably diverse reproductive strategies, including polygamy by both sexes. Still, to date, most Neotropical species remain unstudied as to whether the observed reproductive behavior in natural populations correlates with their genetic mating systems. Here, we investigated the genetic mating system of a wild population of Prochilodus lineatus settled in the Middle Uruguay River basin. By using sibship reconstruction and parental inference methods based on microsatellites’ genotypes, we inferred 45 females and 47 males as potential parents of the 87 larvae analyzed. We found evidence supporting polygamous mating in both sexes: while a high percentage of males (44.7%) fertilized the eggs of one female, 55.3% of the inferred males fertilized eggs of up to four females. Likewise, while 44.5% of the inferred females had their eggs fertilized by one only male, 55.5% of females were fertilized by multiple males. The estimated proxy of the effective population size (Nb) was 126, exhibiting moderate to high levels of genetic diversity. The genetic evidence contributed in this study complements earlier behavioral observations of formation of spawning nuclei of aggregating breeders, which may be promoting a polygamous mating strategy in this long-distance migratory fish.
DOI: 10.6084/m9.figshare.14322811.v1
title: Using community phylogenetics to assess phylogenetic structure in the Fitzcarrald region of Western Amazonia

description: ABSTRACT Here we explore the use of community phylogenetics as a tool to document patterns of biodiversity in the Fitzcarrald region, a remote area in Southwestern Amazonia. For these analyses, we subdivide the region into basin-wide assemblages encompassing the headwaters of four Amazonian tributaries (Urubamba, Yuruá, Purús and Las Piedras basins), and habitat types: river channels, terra firme (non-floodplain) streams, and floodplain lakes. We present a robust, well-documented collection of fishes from the region including 272 species collected from 132 field sites over 63 field days and four years, comprising the most extensive collection of fishes from this region to date. We conduct a preliminary community phylogenetic analysis based on this collection and recover results largely statistically indistinguishable from the random expectation, with only a few instances of phylogenetic structure. Based on these results, and of those published in other recent biogeographic studies, we conclude that the Fitzcarrald fish species pool accumulated over a period of several million years, plausibly as a result of dispersal from the larger species pool of Greater Amazonia.
DOI: 10.6084/m9.figshare.14322811
title: Using community phylogenetics to assess phylogenetic structure in the Fitzcarrald region of Western Amazonia

description: ABSTRACT Here we explore the use of community phylogenetics as a tool to document patterns of biodiversity in the Fitzcarrald region, a remote area in Southwestern Amazonia. For these analyses, we subdivide the region into basin-wide assemblages encompassing the headwaters of four Amazonian tributaries (Urubamba, Yuruá, Purús and Las Piedras basins), and habitat types: river channels, terra firme (non-floodplain) streams, and floodplain lakes. We present a robust, well-documented collection of fishes from the region including 272 species collected from 132 field sites over 63 field days and four years, comprising the most extensive collection of fishes from this region to date. We conduct a preliminary community phylogenetic analysis based on this collection and recover results largely statistically indistinguishable from the random expectation, with only a few instances of phylogenetic structure. Based on these results, and of those published in other recent biogeographic studies, we conclude that the Fitzcarrald fish species pool accumulated over a period of several million years, plausibly as a result of dispersal from the larger species pool of Greater Amazonia.
DOI: 10.6084/m9.figshare.14322813
title: Comparative cytogenetic analyses in Ancistrus species (Siluriformes: Loricariidae)

description: ABSTRACT Ancistrus is a specious genus of armored catfishes that has been extensively used for cytogenetic studies in the last 17 years. A comparison of the extensive karyotypic plasticity within this genus is presented with new cytogenetic analysis for Ancistrus cf. multispinis and Ancistrus aguaboensis. This study aims to improve our understanding of chromosomal evolution associated with changes in the diploid number (2n) and the dispersion of ribosomal DNAs (rDNAs) within Ancistrus. Ancistrus cf. multispinis and A. aguaboensis exhibit 2n of 52 and 50 chromosomes, respectively. Given that A. cf. multispinis shares a 2n = 52 also found in Pterygoplichthyini, the sister group for Ancistrini, a Robertsonian (Rb) fusion event is proposed for the 2n reduction in A. aguaboensis. 5S rDNAs pseudogenes sites have already been associated with Rb fusion in Ancistrus and our analysis suggests that the 2n reduction in A. aguaboensis was triggered by double strand breaks (DSBs) and chromosomal rearrangements at 5S rDNA sites. The presence of evolutionary breakpoint regions (EBRs) into rDNA cluster is proposed to explain part of the Rb fusion in Ancistrus. Cytogenetic data presented extends the diversity already documented in Ancistrus to further understand the role of chromosomal rearrangements in the diversification of Ancistrini.
DOI: 10.6084/m9.figshare.14322813.v1
title: Comparative cytogenetic analyses in Ancistrus species (Siluriformes: Loricariidae)

description: ABSTRACT Ancistrus is a specious genus of armored catfishes that has been extensively used for cytogenetic studies in the last 17 years. A comparison of the extensive karyotypic plasticity within this genus is presented with new cytogenetic analysis for Ancistrus cf. multispinis and Ancistrus aguaboensis. This study aims to improve our understanding of chromosomal evolution associated with changes in the diploid number (2n) and the dispersion of ribosomal DNAs (rDNAs) within Ancistrus. Ancistrus cf. multispinis and A. aguaboensis exhibit 2n of 52 and 50 chromosomes, respectively. Given that A. cf. multispinis shares a 2n = 52 also found in Pterygoplichthyini, the sister group for Ancistrini, a Robertsonian (Rb) fusion event is proposed for the 2n reduction in A. aguaboensis. 5S rDNAs pseudogenes sites have already been associated with Rb fusion in Ancistrus and our analysis suggests that the 2n reduction in A. aguaboensis was triggered by double strand breaks (DSBs) and chromosomal rearrangements at 5S rDNA sites. The presence of evolutionary breakpoint regions (EBRs) into rDNA cluster is proposed to explain part of the Rb fusion in Ancistrus. Cytogenetic data presented extends the diversity already documented in Ancistrus to further understand the role of chromosomal rearrangements in the diversification of Ancistrini.
DOI: 10.6084/m9.figshare.14322814
title: Fish biomarker responses to perturbation by drought in streams

description: ABSTRACT Drought can be viewd as a perturbation in running waters and fish are often trapped in isolated pools, where deterioration of water quality may be stressful. We investigated how this extreme condition influences response of oxidative stress biomarkers. The response of the characid Astyanax elachylepis was assessed during the dry and rainy seasons in intermittent and perennial (control) sites in streams from Brazilian savannah (Cerrado). We predicted that the biomarkers would be enhanced in the dry season in intermittent streams only due the environmentally harsh conditions in the few isolated pools that remain filled with water. As predicted, fish from the intermittent stream in the dry season presented higher gill MDA values, indicating greater stress. In the liver, MDA values were higher in the dry season for both intermittent and perennial streams, suggesting a generalized seasonal response. As expected, some antioxidant response enzymes changed in the intermittent sites during the dry season. Therefore, oxidative stress biomarkers vary seasonally, with greater increase in intermittent sites. These evidences contribute for the understanding of the spatio-temporal variation of the fish responses and fish resistance to perturbations by drought in tropical environments.
DOI: 10.6084/m9.figshare.14322814.v1
title: Fish biomarker responses to perturbation by drought in streams

description: ABSTRACT Drought can be viewd as a perturbation in running waters and fish are often trapped in isolated pools, where deterioration of water quality may be stressful. We investigated how this extreme condition influences response of oxidative stress biomarkers. The response of the characid Astyanax elachylepis was assessed during the dry and rainy seasons in intermittent and perennial (control) sites in streams from Brazilian savannah (Cerrado). We predicted that the biomarkers would be enhanced in the dry season in intermittent streams only due the environmentally harsh conditions in the few isolated pools that remain filled with water. As predicted, fish from the intermittent stream in the dry season presented higher gill MDA values, indicating greater stress. In the liver, MDA values were higher in the dry season for both intermittent and perennial streams, suggesting a generalized seasonal response. As expected, some antioxidant response enzymes changed in the intermittent sites during the dry season. Therefore, oxidative stress biomarkers vary seasonally, with greater increase in intermittent sites. These evidences contribute for the understanding of the spatio-temporal variation of the fish responses and fish resistance to perturbations by drought in tropical environments.
DOI: 10.6084/m9.figshare.14322816
title: An osteometric approach to reconstruct the length and weight of Lutjanus argentiventris (Perciformes: Lujtanidae) for archaeological and ecological purposes

description: ABSTRACT Lutjanus argentiventris presents a large intertropical distribution within the Eastern Pacific, which is as important to fisheries now as it was in the pre-Hispanic period. The purpose of this article is to present an allometric model that enables the size and weight of L. argentiventris to be predicted, using the isolated bones found in archaeological and paleontological contexts or the stomach contents of ichthyophagous species. A modern collection of L. argentiventris from Ecuador was used, composed of 37 individuals covering a wide range of sizes and weights. The total length (TL), standard length (SL), and total fresh weight (W) of each individual was gathered. The TL of the sample ranged between 210 and 760 mm, the SL between 164 and 627 mm and the W ranged between 123 and 6550 g. The most frequent bones (15) and otoliths were chosen and 39 measurements were taken. The total length-weight relationship was W = 6E-06 TL3.1513 with R 2 = 0.997. In general, it was observed that the relationships between the TL and the bone measurements had a strong correlation (R² &gt; 0.95). The allometric model will be useful not only for archaeologists but also for biologists working on historical ecology.
DOI: 10.6084/m9.figshare.14322816.v1
title: An osteometric approach to reconstruct the length and weight of Lutjanus argentiventris (Perciformes: Lujtanidae) for archaeological and ecological purposes

description: ABSTRACT Lutjanus argentiventris presents a large intertropical distribution within the Eastern Pacific, which is as important to fisheries now as it was in the pre-Hispanic period. The purpose of this article is to present an allometric model that enables the size and weight of L. argentiventris to be predicted, using the isolated bones found in archaeological and paleontological contexts or the stomach contents of ichthyophagous species. A modern collection of L. argentiventris from Ecuador was used, composed of 37 individuals covering a wide range of sizes and weights. The total length (TL), standard length (SL), and total fresh weight (W) of each individual was gathered. The TL of the sample ranged between 210 and 760 mm, the SL between 164 and 627 mm and the W ranged between 123 and 6550 g. The most frequent bones (15) and otoliths were chosen and 39 measurements were taken. The total length-weight relationship was W = 6E-06 TL3.1513 with R 2 = 0.997. In general, it was observed that the relationships between the TL and the bone measurements had a strong correlation (R² &gt; 0.95). The allometric model will be useful not only for archaeologists but also for biologists working on historical ecology.
DOI: 10.6084/m9.figshare.12847481
title: Purcell_RawFunctionals

description: Data
DOI: 10.6084/m9.figshare.14322820
title: Feeding ecology of electric eel Electrophorus varii (Gymnotiformes: Gymnotidae) in the Curiaú River Basin, Eastern Amazon

description: ABSTRACT In this study, the composition of the diet and the feeding activity of Electrophorus varii were evaluated. The influence of ontogeny and seasonality in these feeding parameters was also examined. Fish were collected in the Curiaú River Basin, Amazon, Brazil, from March 2005 to February 2006, during the rainy (January-June) and dry (July-December) seasons. Diet composition was characterized based on the analysis of stomach contents and feeding dynamics was assessed based on the Stomach Fullness Index (IR) calculated using stomach weight. Stomach content and RI data were grouped into four-cm size classes (40-80, 80-120, 120-160, and 160-200) and two seasonal periods (rainy and dry). The influence of ontogeny and seasonality in the diet was investigated through PERMANOVA, and in the food dynamics through ANOVA. The analysis of stomach contents revealed that fish were the most consumed preys by electric eels, especially Callichthyidae and Cichlidae. Diet composition and RI values of electric eels were not influenced by ontogeny and seasonality. Electric eels are fish predators, regardless of size class and seasonal period.
DOI: 10.6084/m9.figshare.14322820.v1
title: Feeding ecology of electric eel Electrophorus varii (Gymnotiformes: Gymnotidae) in the Curiaú River Basin, Eastern Amazon

description: ABSTRACT In this study, the composition of the diet and the feeding activity of Electrophorus varii were evaluated. The influence of ontogeny and seasonality in these feeding parameters was also examined. Fish were collected in the Curiaú River Basin, Amazon, Brazil, from March 2005 to February 2006, during the rainy (January-June) and dry (July-December) seasons. Diet composition was characterized based on the analysis of stomach contents and feeding dynamics was assessed based on the Stomach Fullness Index (IR) calculated using stomach weight. Stomach content and RI data were grouped into four-cm size classes (40-80, 80-120, 120-160, and 160-200) and two seasonal periods (rainy and dry). The influence of ontogeny and seasonality in the diet was investigated through PERMANOVA, and in the food dynamics through ANOVA. The analysis of stomach contents revealed that fish were the most consumed preys by electric eels, especially Callichthyidae and Cichlidae. Diet composition and RI values of electric eels were not influenced by ontogeny and seasonality. Electric eels are fish predators, regardless of size class and seasonal period.
DOI: 10.6084/m9.figshare.12847481.v1
title: Purcell_RawFunctionals

description: Data
DOI: 10.6084/m9.figshare.14322825
title: Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition

description: ABSTRACT Historically, there are divergences in the species allocation between Centromochlus and Tatia. This study aimed to generate the first cytogenetic data about Centromochlus and, by analyzing a population of Centromochlus heckelii from the Amazon River basin, to contribute as evidence to a historical taxonomic dilemma. Diploid number of 46 chromosomes and a heteromorphic pair was found in the female karyotypes, thus characterizing a ZZ/ZW sex chromosome system. Pale blocks of heterochromatin were located in centromeric regions of some chromosomes; however, the exclusive female chromosome (W) is almost entirely heterochromatic. AgNORs were detected in terminal position on the short arms of one acrocentric pair in males and two chromosome pairs in females, the acrocentric plus the sex chromosome pair. Notable differences between Centromochlus heckelii and previous data about species of Tatia are: lower diploid number, presence of a sex chromosome system and multiple AgNORs in Centromochlus, while species of Tatia have simple AgNORs and the absence of acrocentric chromosomes. Results in this study show that chromosomal markers could contribute as evidence to taxonomic delimitation studies.
DOI: 10.6084/m9.figshare.14322838
title: Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin

description: ABSTRACT Moenkhausia melogramma is herein redescribed, based on the examination of the holotype plus additional specimens from the western Amazon basin in Brazil, Colombia, Peru, and Ecuador. Moenkhausia melogramma shares with M. collettii, M. conspicua, M. copei, M. venerei, and M. flava a broad dark longitudinal stripe across the eye, and a well-defined dark stripe on the anal-fin base. It can be promptly distinguished from these species by having two humeral blotches. Additionally, we provide comments on the putative relationships of Moenkhausia melogramma with the aforementioned congeners and the Hemigrammus lunatus species-group.
DOI: 10.6084/m9.figshare.14322825.v1
title: Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition

description: ABSTRACT Historically, there are divergences in the species allocation between Centromochlus and Tatia. This study aimed to generate the first cytogenetic data about Centromochlus and, by analyzing a population of Centromochlus heckelii from the Amazon River basin, to contribute as evidence to a historical taxonomic dilemma. Diploid number of 46 chromosomes and a heteromorphic pair was found in the female karyotypes, thus characterizing a ZZ/ZW sex chromosome system. Pale blocks of heterochromatin were located in centromeric regions of some chromosomes; however, the exclusive female chromosome (W) is almost entirely heterochromatic. AgNORs were detected in terminal position on the short arms of one acrocentric pair in males and two chromosome pairs in females, the acrocentric plus the sex chromosome pair. Notable differences between Centromochlus heckelii and previous data about species of Tatia are: lower diploid number, presence of a sex chromosome system and multiple AgNORs in Centromochlus, while species of Tatia have simple AgNORs and the absence of acrocentric chromosomes. Results in this study show that chromosomal markers could contribute as evidence to taxonomic delimitation studies.
DOI: 10.6084/m9.figshare.14322838.v1
title: Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin

description: ABSTRACT Moenkhausia melogramma is herein redescribed, based on the examination of the holotype plus additional specimens from the western Amazon basin in Brazil, Colombia, Peru, and Ecuador. Moenkhausia melogramma shares with M. collettii, M. conspicua, M. copei, M. venerei, and M. flava a broad dark longitudinal stripe across the eye, and a well-defined dark stripe on the anal-fin base. It can be promptly distinguished from these species by having two humeral blotches. Additionally, we provide comments on the putative relationships of Moenkhausia melogramma with the aforementioned congeners and the Hemigrammus lunatus species-group.