cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.717660.1
title: Microbial enzymatic activities from seawater and from particle-associated seawater communities from Greenland, August 2015 (Patterns of activities project)

description: Bacterial activity as measured by hydrolysis rates from unfiltered seawater and particle-associated communities collected near shore in northeastern Greenland in August 2015.
DOI: 10.26008/1912/bco-dmo.810368.1
title: MESMO global model output for future simulations with dynamic C:N:P ratios for years 1750-2500

description: MESMO global model output for future simulations with dynamic C:N:P ratios for years 1750-2500. The dataset contains NetCDF files with 3D ocean biogeochemistry model outputs.
DOI: 10.26008/1912/bco-dmo.719487.1
title: Hydrolysis rates from bulk samples, plate reader results from RV/Endeavor EN556, 2015 (Patterns of activities project)

description: This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity, from bulk samples, plate reader results from RV/Endeavor EN556, 2015.
DOI: 10.26008/1912/bco-dmo.719712.1
title: Hydrolysis rates from bulk water sample incubations, fluorometer results from RV/Endeavor EN556, 2015 (Patterns of activities project)

description: This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity.
DOI: 10.26008/1912/bco-dmo.720307.1
title: Hydrolysis rates from incubations on particles obtained by gravity filtration of water collected on RV/Endeavor EN556 (Patterns of activities project)

description: This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity at multiple time points. The water was from gravity filtration samples.
DOI: 10.26008/1912/bco-dmo.543808.1
title: Virioplankton abundance from multiple cruises at the Bermuda AtlanticTime Series Station (BATS), Western Sargasso Sea from 2000-2011 (Ocean Microbial Observatory project)

description: Virioplankton abundances were measured from samples collected from January 2000 to December 2011 at the Bermuda Atlantic Time Series Station (BATS), Western Sargasso Sea, as part of the larger BATS program aboard the R/V Weatherbird II or the R/V Atlantic Explorer. Supporting data provided by the BATS time-series program and are available at (http://bats.bios.edu/).
DOI: 10.26008/1912/bco-dmo.719655.1
title: Hydrolysis rates from gravity filtered samples, plate reader results from RV/Endeavor EN556, 2015 (Patterns of activities project)

description: This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity. The water was from gravity filtration samples.
DOI: 10.26008/1912/bco-dmo.745518.2
title: Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015

description: Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.

These data were published in Hu et al. (2018).
DOI: 10.26008/1912/bco-dmo.543314.1
title: Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013 (Ocean Microbial Observatory project)

description: Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013. This dataset includes water samples collected from 2009-2013 at the Bermuda Hydrostation that were analyzed for DOC, POC, bacterial abundance, leucine, and thymidine incorporation.
DOI: 10.26008/1912/bco-dmo.543771.1
title: Sugar concentrations from the BATS site in the Sargasso Sea, 2001-2004 (Ocean Microbial Observatory project)

description: Sugar concentrations and dissolved combined neutral sugar (DCNS) dynamics were measured from samples for DCNS collected monthly to bimonthly between 2001 and 2004 at the BATS study site aboard the R/V Weatherbird II, Western Sargasso Sea.
DOI: 10.26008/1912/bco-dmo.543828.1
title: Virioplankton abundance using FISH probe at BATS site in the western Sargasso Sea from 2000-2011 (Ocean Microbial Observatory project)

description: Virioplankton abundances were measured from samples collected from January 2000 to December 2011 as part of the larger BATS program aboard the R/V Weatherbird II or the R/V Atlantic Explorer. Supporting data provided by the BATS time-series program and are available at (http://bats.bios.edu/). This dataset reports abundances quantified using FISH (Fluorescence in situ hybridization).
DOI: 10.26008/1912/bco-dmo.748064.1
title: Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014

description: This dataset is a raw output operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from extracted DNA and RNA. Columns represent samples, including month sampled, material (either extracted RNA or DNA), and depth (in meters); thus values in each column represent the number of sequences in that sample that belong to a given OTU (OTUs by row). Each row represents a single OTU. The last column lists the taxonomic identifier assigned to each OTU. The raw sequence data can be found in the NCBI SRA database under accession number SRP070577 with the associated BioProject PRJNA311248.
DOI: 10.26008/1912/bco-dmo.810182.1
title: Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017

description: Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017. This continuous census file contains the formation and demise times and locations, and the area at formation for all 961 WCRs formed between 1980 and 2017 that lived for a week or more. Each row represents a unique Warm Core Ring and is identified by a unique alphanumeric code 'WEyyyymmddA', where 'WE' represents a Warm Eddy (as identified in the analysis charts); 'yyyymmdd' is the year, month and day of formation; and the last character 'A' represents the sequential sighting of the eddies in a particular year. For example, the first ring in 2017 having a trailing alphabet of 'E' indicates that four rings were carried over from 2016 which are still observed on January 1, 2017.
DOI: 10.26008/1912/bco-dmo.766394.1
title: POC and PON from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018

description: POC and PON from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018.
DOI: 10.26008/1912/bco-dmo.808261.1
title: P. verrucosa growth data used to parameterize growth-rate curve

description: P. verrucosa growth data used to parameterize growth-rate curve acquired at the Moorea LTER site, 17.5 S 149.8 W depth 10m between 2011 and 2017
DOI: 10.26008/1912/bco-dmo.809945.1
title: Winter survey data from Lake Erie from 2018-2019

description: Winter survey data from Lake Erie collected on USCGC NEAH BAY and CCGS Limnos during 2018 and 2019.
DOI: 10.26008/1912/bco-dmo.766334.1
title: Nitrogen and carbon fixation rates from bulk water samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018

description: Nitrogen and carbon fixation rates from bulk water samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018.
DOI: 10.26008/1912/bco-dmo.766354.1
title: Nitrogen and carbon fixation rates from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018

description: Nitrogen and carbon fixation rates from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018.
DOI: 10.26008/1912/bco-dmo.766374.1
title: POC and PON from bulk seawater samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018

description: POC and PON from bulk seawater samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018.
DOI: 10.26008/1912/bco-dmo.787147.1
title: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

description: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes, analyzed by 2D LC-MS/MS in units of normalized protein spectral counts. Samples were collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018.
DOI: 10.26008/1912/bco-dmo.787168.1
title: Net tow metaproteoome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized peptide spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

description: Net tow metaproteoome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes, analyzed by 2D LC-MS/MS in units of normalized peptide spectral counts. Samples were collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018.
DOI: 10.26008/1912/bco-dmo.3517.2
title: GTC bottle data along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic during 2010 (U.S. GEOTRACES NAT project)

description: GTC bottle data along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic during 2010.
DOI: 10.26008/1912/bco-dmo.3519.4
title: ODF bottle data along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic during 2010 (U.S. GEOTRACES NAT project)

description: ODF bottle data along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic during 2010.
DOI: 10.26008/1912/bco-dmo.810032.1
title: Global reconstruction of surface oceanic N2O disequilibrium and its associated flux

description: Global reconstruction of surface oceanic N2O disequilibrium and its associated flux. The dataset consists of (1) a global compilation of observed nitrous oxide pressure, concentration, mixing ratio measurements and their associated disequilibrium in the surface ocean; (2) the globally mapped N2O disequilibrium predicted by a supervised learning algorithm, and (3) the reconstructed ocean to atmosphere N2O flux.
DOI: 10.26008/1912/bco-dmo.3687.2
title: Bottle data along the US GEOTRACES North Atlantic Transect from the R/V Knorr KN204-01 cruise in the subtropical N. Atlantic during 2011 (U.S. GEOTRACES NAT project)

description: Bottle data along the US GEOTRACES North Atlantic Transect from the R/V Knorr KN204-01 cruise in the subtropical N. Atlantic during 2011.
DOI: 10.26008/1912/bco-dmo.3851.1
title: Particulate organic carbon (POC) and nitrogen (PON) along US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic from 2010 (U.S. GEOTRACES NAT project)

description: Particulate organic carbon (POC) and nitrogen (PON) along US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic from 2010.
DOI: 10.26008/1912/bco-dmo.3855.1
title: Dissolved organic carbon (DOC) from US GEOTRACES North Atlantic Transect cruise on the R/V Knorr KN199-04 in the subtropical N. Atlantic in 2010 (U.S. GEOTRACES NAT project)

description: Dissolved organic carbon (DOC) from US GEOTRACES North Atlantic Transect cruise on the R/V Knorr KN199-04 in the subtropical N. Atlantic in 2010.
DOI: 10.26008/1912/bco-dmo.753837.1
title: Radium isotope measurements from CTD and underway water samples from the R/V Endeavor from 2018-05-06 to 2018-05-29

description: Radium isotope (223Ra, 224Ra, and 226Ra) measurements from CTD and underway water samples.
DOI: 10.26008/1912/bco-dmo.787181.1
title: FASTA file of sequences in Trichodesmium field metaproteomes mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

description: FASTA file of sequences in Trichodesmium field metaproteomes analyzed by 2D LC-MS/MS mapped to a Trichodesmium metagenome (IMG ID 2821474806)  plus cyanoGEBA species genomes (Shih et al, 2013).  Samples were collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018.


Related datasets:
Trichodesmium field metaproteomes - peptide spectral counts: https://www.bco-dmo.org/dataset/787168
Trichodesmium field metaproteomes - protein spectral counts: https://www.bco-dmo.org/dataset/787147
Trichodesmium sample provenance: https://www.bco-dmo.org/dataset/787093 - Sample provenance file, which includes sample locations, filter sizes
DOI: 10.26008/1912/bco-dmo.4070.1
title: Profiles of stable isotopes of silicon (Si) in silicic acid (Si(OH)4) from R/V Knorr cruises KN199-04, KN204-01 in the Subtropical northern Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project)

description: Profiles of stable isotopes of silicon in silicic acid (delta 30Si) collected at stations during the GT10 (KN199-04) and GT11 (KN204-01) U.S. GEOTRACES North Atlantic Transect cruises.
DOI: 10.26008/1912/bco-dmo.769601.1
title: Phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN614 in the tropical North Atlantic during May 2018

description: Phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN614 in the tropical North Atlantic during May 2018. Note: these data are also available through NASA's SeaBASS repository at https://seabass.gsfc.nasa.gov/archive/COLUMBIA_U/subramaniam/LAMONT_ATL/may18atl/archive
DOI: 10.26008/1912/bco-dmo.782888.1
title: Growth rates under low and high temperatures for Emiliania huxleyi in constant and fluctuating thermal environments

description: This dataset includes the growth rates under low and high temperatures for E. huxleyi in constant and fluctuating thermal environments. Global warming will be combined with predicted increases in thermal variability in the future surface ocean, but how temperature dynamics will affect phytoplankton biology and biogeochemistry is largely unknown. Here, we examine the responses of the globally important marine coccolithophore Emiliania huxleyi to thermal variations at two frequencies (1 d and 2 d) at low (18.5 °C) and high (25.5 °C) mean temperatures. Elevated temperature and thermal variation decreased growth, calcification and physiological rates, both individually and interactively. The 1 d thermal variation frequencies were less inhibitory than 2 d variations under high temperatures, indicating that high-frequency thermal fluctuations may reduce heat-induced mortality and mitigate some impacts of extreme high-temperature events. Cellular elemental composition and calcification was significantly affected by both thermal variation treatments relative to each other and to the constant temperature controls. The negative effects of thermal variation on E. huxleyi growth rate and physiology are especially pronounced at high temperatures. These responses of the key marine calcifier E. huxleyi to warmer, more variable temperature regimes have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.
DOI: 10.26008/1912/bco-dmo.782911.1
title: Growth rates for Emiliania huxleyi thermal response curve across 12 temperatures from 8.5-28.6C

description: This dataset presents growth rates for Emiliania huxleyi thermal response curve across 12 temperatures from 8.5-28.6C.Global warming will be combined with predicted increases in thermal variability in the future surface ocean, but how temperature dynamics will affect phytoplankton biology and biogeochemistry is largely unknown. Here, we examine the responses of the globally important marine coccolithophore Emiliania huxleyi to thermal variations at two frequencies (1 d and 2 d) at low (18.5 °C) and high (25.5 °C) mean temperatures. Elevated temperature and thermal variation decreased growth, calcification and physiological rates, both individually and interactively. The 1 d thermal variation frequencies were less inhibitory than 2 d variations under high temperatures, indicating that high-frequency thermal fluctuations may reduce heat-induced mortality and mitigate some impacts of extreme high-temperature events. Cellular elemental composition and calcification was significantly affected by both thermal variation treatments relative to each other and to the constant temperature controls. The negative effects of thermal variation on E. huxleyi growth rate and physiology are especially pronounced at high temperatures. These responses of the key marine calcifier E. huxleyi to warmer, more variable temperature regimes have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.
DOI: 10.26008/1912/bco-dmo.782921.1
title: Elemental stoichiometry for Emiliania huxleyi across a range of 12 temperatures from 8.5-28.6C

description: This dataset includes elemental stoichiometry for Emiliania huxleyi across a range of 12 temperatures from 8.5-28.6C. Global warming will be combined with predicted increases in thermal variability in the future surface ocean, but how temperature dynamics will affect phytoplankton biology and biogeochemistry is largely unknown. Here, we examine the responses of the globally important marine coccolithophore Emiliania huxleyi to thermal variations at two frequencies (1 d and 2 d) at low (18.5 °C) and high (25.5 °C) mean temperatures. Elevated temperature and thermal variation decreased growth, calcification and physiological rates, both individually and interactively. The 1 d thermal variation frequencies were less inhibitory than 2 d variations under high temperatures, indicating that high-frequency thermal fluctuations may reduce heat-induced mortality and mitigate some impacts of extreme high-temperature events. Cellular elemental composition and calcification was significantly affected by both thermal variation treatments relative to each other and to the constant temperature controls. The negative effects of thermal variation on E. huxleyi growth rate and physiology are especially pronounced at high temperatures. These responses of the key marine calcifier E. huxleyi to warmer, more variable temperature regimes have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.
DOI: 10.26008/1912/bco-dmo.782901.1
title: Intracellular elemental quotas under low and high temperatures for E. huxleyi in constant and fluctuating thermal environments

description: Intracellular elemental quotas under low and high temperatures for E. huxleyi in constant and fluctuating thermal environments. This dataset includes the growth rates under low and high temperatures for E. huxleyi in constant and fluctuating thermal environments. Global warming will be combined with predicted increases in thermal variability in the future surface ocean, but how temperature dynamics will affect phytoplankton biology and biogeochemistry is largely unknown. Here, we examine the responses of the globally important marine coccolithophore Emiliania huxleyi to thermal variations at two frequencies (1 d and 2 d) at low (18.5 °C) and high (25.5 °C) mean temperatures. Elevated temperature and thermal variation decreased growth, calcification and physiological rates, both individually and interactively. The 1 d thermal variation frequencies were less inhibitory than 2 d variations under high temperatures, indicating that high-frequency thermal fluctuations may reduce heat-induced mortality and mitigate some impacts of extreme high-temperature events. Cellular elemental composition and calcification was significantly affected by both thermal variation treatments relative to each other and to the constant temperature controls. The negative effects of thermal variation on E. huxleyi growth rate and physiology are especially pronounced at high temperatures. These responses of the key marine calcifier E. huxleyi to warmer, more variable temperature regimes have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.
DOI: 10.26008/1912/bco-dmo.792385.3
title: Zooplankton abundance from Isaacs-Kid Midwater Trawl (IKMT) hauls from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018

description: Isaacs-Kid Midwater Trawl (IKMT) hauls were conducted during the R/V Nathaniel B. Palmer cruise NBP18-01 in Jan-Feb 2018. These data represent the zooplankton species and abundance analysis resulting from these sample collections. A companion dataset of ring net tow abundances is also available.
DOI: 10.26008/1912/bco-dmo.782314.1
title: Growth rates across temperatures for 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017

description: Growth rates across temperatures for 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017.
DOI: 10.26008/1912/bco-dmo.782848.1
title: NetCDF model output of the entire state of the surface layer, including simulated dFe dyes, of the circum-Antarctic

description: false
DOI: 10.26008/1912/bco-dmo.787078.1
title: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

description: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018.
DOI: 10.26008/1912/bco-dmo.743054.1
title: Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016

description: This dataset includes polysaccharide hydrolysis rates measured in bulk (not filter-fractionated) seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.
DOI: 10.26008/1912/bco-dmo.743320.1
title: Microbial enzyme activities: glucosidase and peptidase activities of gravity filtered seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016

description: This dataset includes MCAMUF (glucosidase and peptidase) hydrolysis rates to measure microbial enzyme activities on particles collected from gravity filtered seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.
DOI: 10.26008/1912/bco-dmo.782308.1
title: The thermal niche for each of 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017

description: The thermal niche, as calculated from the Thermal Performance Curve (TPC), for each of 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017.