cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.96n62/1
title: Juvenile_survival
DOI: 10.5061/dryad.96n62/2
title: Siring_success
DOI: 10.5061/dryad.9dd42/1
title: Gastrotheca_Blackburn&Duelman2013

description: Nexus file containing aligned sequence data for four genes: 16S (mt), ND1 (mt), POMC (nuc), and RAG-1 (nuc). File also includes character sets and model settings for analysis.
DOI: 10.5061/dryad.9k5sn/1
title: Parental care and body size data

description: This data set has been compiled from online sources, scholarly articles, books and other literary sources. The file includes species names, whether or not they provide parental care, which type of care they provide, and male and female body length (snout to vent: SVL) in millimeters. Data points are referenced and references can be found below the data set.
DOI: 10.5061/dryad.bk469/1
title: ROS_survival
DOI: 10.5061/dryad.bk469/2
title: ROS_lytic_Day4
DOI: 10.5061/dryad.bk469/3
title: 4DayROS_qPCR
DOI: 10.5061/dryad.c8r03/1
title: DRYAD - All traits raw data_140912

description: Trait values of replicates of 14 isolates of each of nine Rhynchosporium commune populations. The eight quantitative traits studied were: growth rate at 12°C, growth rate at 18°C, growth rate at 22°C, fungicide resistance, melanization, spore size, spore number, and virulence.
DOI: 10.5061/dryad.d5d6b/1
title: Taff_Data

description: This file contains all of the data used in analyses presented in this paper. Please see the included readme file for detailed descriptions of each column header and additional information.
DOI: 10.5061/dryad.d5d6b/2
title: Taff_RCode

description: This is the r script file used to perform all analysis and generate all figures presented in the associated paper. Should be used in conjunction with the associated data file. Note that appropriate packages will need to be installed before running this script. A list of required packages can be found within the script file.
DOI: 10.5061/dryad.ff749/70
title: Anodendron oblongifolium partial plastome assembly

description: fasta file
DOI: 10.5061/dryad.gm41t/1
title: 12S

description: Alignment of 12S
DOI: 10.5061/dryad.gm41t/2
title: 16S

description: Alignment 16S
DOI: 10.5061/dryad.gm41t/3
title: BDNF

description: Alignment
DOI: 10.5061/dryad.gm41t/4
title: ND2

description: Alignment ND2
DOI: 10.5061/dryad.gm41t/5
title: datamatrix

description: Concatenated data
DOI: 10.5061/dryad.gm41t/6
title: RAxML_infile

description: RAxML input file
DOI: 10.5061/dryad.gm41t/7
title: RAxML

description: RAxML tree
DOI: 10.5061/dryad.gm41t/8
title: partition_scheme

description: Best partition scheme and substitution models chosen by Partition Finder
DOI: 10.5061/dryad.gm41t/9
title: Beast_50K

description: Input file of Beast
DOI: 10.5061/dryad.m3h18/7
title: TTC2_QTL_IciMapping

description: IciMapping file for Leymus TTC2 population.
DOI: 10.5061/dryad.p5k2r/1
title: AFLP genotype data from island populations of kelp-associated marine invertebrates
DOI: 10.5061/dryad.q4q52/1
title: Difference in the percentage proliferation in choanocytes and mesohyl cells

description: Percentage of proliferating choanocyte and mesohyl cells per individual and per species
DOI: 10.5061/dryad.q4q52/2
title: Proliferation difference r file

description: R scripts for percentage of proliferating choanocyte and mesohyl cells per individual.
DOI: 10.5061/dryad.q4q52/3
title: Halisarca caerulea choanocyte proliferation 6h vs 10h

description: Percentage of proliferating choanocytes in Halisarca caerulea specimens, incubated with BrdU for either 6 hours or 10 hours.
DOI: 10.5061/dryad.q4q52/4
title: Halisarca caerulea choanocyte proliferation 6h vs 10h r script

description: R script for percentage of proliferating choanocytes in Halisarca caerulea specimens, incubated with BrdU for either 6 hours or 10 hours.
DOI: 10.5061/dryad.q4q52/5
title: Detritus production

description: Daily detritus production (in mg) for test and control samples, forseveral sponge species and (for most individuals) sampling over time
DOI: 10.5061/dryad.q4q52/6
title: Detritus production R script

description: R script for daily detritus production (in mg) for test and control samples, forseveral species and (for most individuals) sampling over time
DOI: 10.5061/dryad.q4q52/7
title: Detritus production vs shedder type

description: Daily detritus production as percentage of body weight for various sponge species and shedder types.
DOI: 10.5061/dryad.q4q52/8
title: Detritus production vs shedder type R script

description: R script for daily detritus production as percentage of body weight for various species and shedder types.
DOI: 10.5061/dryad.r25g1/1
title: Nyman_etal_to_DRYAD

description: Text-formatted DIYABC data file containing microsatellite genotypes and mitochondrial control-region sequences of Saimaa, Ladoga, and Baltic ringed seals.
DOI: 10.5061/dryad.r25g1/2
title: Nyman_etal_to_DRYAD_reftableHeaders

description: Text-formatted reftableHeader file containing scenarios, priors, and summary statistics used in the main DIYABC analyses
DOI: 10.5061/dryad.rg832/1
title: Benthic, fish, geospatial and environmental data
DOI: 10.5061/dryad.s631d/2
title: DNA dataset matrix

description: DNA dataset matrix in nexus format with four genes (COI, H3, 16S, 18S), 2111 characters and 38 taxa.
DOI: 10.5061/dryad.s631d/3
title: Phylogeny from Bayesian analysis

description: Majority-rule consensus tree from bayesian analysis with MrBayes 3.2 in nexus format.
DOI: 10.5061/dryad.t7t5r/1
title: MA-P Resistance Data
DOI: 10.5061/dryad.t7t5r/2
title: MAPfitnessdata
DOI: 10.5061/dryad.t7t5r/3
title: Drosophila Tolerance Data Entry
DOI: 10.5061/dryad.tf81g.2/1.1
title: Fagales_MCC_uniform_tree

description: Fagales MCC tree using uniform priors
DOI: 10.7925/drs1.ucdlib_31784
title: 60 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31802
title: 70 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1900.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31808
title: 72 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork &stone structure, 4 levels above ground, constructed 1911.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31814
title: 74 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31820
title: 76 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31826
title: 78-79 Grafton Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 5 levels above ground, constructed 1758, remodelled 1995.
description: Dublin City Council, Record of Protected Structures (2010), no. 3254
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31832
title: 81 Grafton Street, Dublin

description: Consists of 2 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1861.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31842
title: 84 Grafton Street, Dublin

description: Consists of 2 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1992.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31846
title: 85-86 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1992.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31849
title: 88-90 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground, constructed 1859.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.283pp/1
title: script

description: A Python script to construct FASTA files containing reconstructed genome sequences of evolved clones after DNA rearrangements.
DOI: 10.5061/dryad.288n0/1
title: Darmency ID-14-0256-R2-Germination
DOI: 10.5061/dryad.288n0/2
title: Darmency ID-14-0256-R2-Field
DOI: 10.5061/dryad.288n0/3
title: Darmency ID-14-0256-R2-Seed
DOI: 10.5061/dryad.293hd/1
title: Barley genotype data

description: SNP genotype data for historical and genebank landrace barley. DNA was extracted from seed of historical collections and leaf tissue from genebank material. File was created in Microsoft Excel 2010.
DOI: 10.5061/dryad.2b2dj/1
title: PopulusBioassayGrowth

description: Here are raw data pertaining to plant survivorship & height (growth) during the course of this experiment.
DOI: 10.5061/dryad.2b2dj/2
title: 16S_host_denoised_by_sampleID.fasta

description: fastq file with all denoised 16S sequences produced in this study
DOI: 10.5061/dryad.2b2dj/3
title: 28S_host_denoised_by_SampleID.fasta.tar

description: All denoised 28S (rDNA) sequences produced in this study in fasta format
DOI: 10.5061/dryad.2b2dj/4
title: ITS1_host_denoised_by_SampleID.fasta.tar

description: All denoised ITS1 sequences produced in this study in fasta format and by Sample ID
DOI: 10.5061/dryad.2b2dj/5
title: ITS2_host_denoised_by_SampleID.fasta.tar

description: All denoised ITS2 sequences produced in this study in fasta format and by Sample ID
DOI: 10.5061/dryad.2b2dj/6
title: 18S_host_denoised_by_SampleID.fasta.tar

description: All denoised 18S rDNA sequences produced in this study in fasta format and by Sample ID
DOI: 10.5061/dryad.2b2dj/7
title: SampleMetadata_GenBank_Accessions

description: Includes all the sample metadata associated with each sample, and BioProject data.
DOI: 10.5061/dryad.2b2dj/8
title: ITS1.fna_rep_set

description: ITS1 rep set of OTUs corresponding to OTUs in supplement 3
DOI: 10.5061/dryad.6475n/2
title: Mistletoe volume per georeferenced tree

description: Collected in the field in 2001-2003
DOI: 10.5061/dryad.6475n/3
title: WEBL natal dispersal distances

description: Natal dispersal distances for western bluebirds wintering on natal territory
DOI: 10.5061/dryad.6n15h/1
title: Range-shuffling model - shelf coordinates

description: 3 vectors with latitudinal coordinates and 3 corresponding vectors with longitudinal coordinates of 1° cells that include shelf depths &lt; 200 m for three ocean margins in the Western Pacific (allWPlats, allWPlongs), Eastern Pacific (allEPlats, allEPlongs), and Western Atlantic (allWAlats, allWAlongs). Midpoints of geographic ranges were assigned in the null model to these 1° cells.
DOI: 10.5061/dryad.6n15h/2
title: Range-shuffling model - SST gridded data

description: MODIS sea-surface temperature data (2009) in an array with 360 rows and 180 columns, corresponding to 1º cells (continental cells have NA values). These data were used in estimation of macroecological thermal ranges for species in the null model.
DOI: 10.5061/dryad.6n15h/3
title: Range-shuffling model - empirical species ranges

description: Empirical latitudinal and longitudinal ranges of species (in º) that are approximately conserved in the null model. These ranges are from the Western Atlantic (946 species) and form two vectors - Slatextent and Slongextent.
DOI: 10.5061/dryad.6n15h/4
title: Range-shuffling model - locality coordinates
DOI: 10.5061/dryad.6n15h/5
title: Range-shuffling model-source code
DOI: 10.5061/dryad.6n15h/6
title: Range expansion model-source code
DOI: 10.5061/dryad.6n15h/7
title: Range expansion model-gradients in SST in W Atlantic
DOI: 10.5061/dryad.6ss2t/1
title: Dryad_microsats

description: spreadsheet of the allele lengths for each162 individual, with year and population information
DOI: 10.5061/dryad.7mp66/1
title: appendix.dryad

description: appendix 1 to 23 in one excel document separated by worksheets.
DOI: 10.5061/dryad.93n5r/1
title: Data

description: The datafile contains five files: (1) The site by species matrices of the four studied regions. Row labels indicate the identity of the site and the year of sampling separated by "_". (2) the functional tree of 217 bird species from France in Newick format, see supplementary material for details about its construction.
DOI: 10.5061/dryad.ch352/1
title: Code tarball for simulation, data analysis and reproduction of figures

description: This tarball contains 4 IPython Notebook files and a static html version of each Notebook. The IPython Notebooks provide the code for running the simulation (E. coli and yeast separate), the sequencing and simulation data analysis, and reproduction of most figures from the paper. Use tar -xvzf filename to expand.
DOI: 10.5061/dryad.ch352/2
title: Simulation results tarball

description: This tarball contains the raw output results of running all the simulations (present as 10 subfolders). Expand output_files.tar.gz within the notebook_html_files folder.
DOI: 10.5061/dryad.f9013/1
title: breed.data.dryad.use

description: This file contains data required for the simulation that quantifies the consequences of observation failure due to offspring mortality for estimates of inbreeding avoidance through extra-pair reproduction.
DOI: 10.5061/dryad.f9013/2
title: data.epy.dryad.use

description: This file contains the data for the basic analysis of inbreeding avoidance through extra-pair reproduction.
DOI: 10.5061/dryad.f9013/3
title: data.fems.dryad.use

description: This file contains the data for the analyses of extra-pair reproduction, clutch size, probability of offspring mortality and brood size in relation to a female's kinship with her socially paired male.
DOI: 10.5061/dryad.f9013/4
title: data.neighbours.dryad.use

description: This dataset describes the coefficient of kinship between each focal female and her first-, second- and non-neighbour males.
DOI: 10.5061/dryad.f9013/6
title: neighbours.na.dryad.use

description: This file contains data required for the simulation that quantifies the consequences of observation failure due to offspring mortality for estimates of inbreeding avoidance through extra-pair reproduction.
DOI: 10.5061/dryad.fn675/1
title: Genotypes of Encholirium horridum samples (SGS and paternity analyses)

description: This file contains genotypes of Encholirium horridum samples used for SGS and paternity analyses (seed-rosettes + progenies).
DOI: 10.5061/dryad.fn675/2
title: Figure1S_Supp material

description: Figure 1 - Supplementary material. Geographical distributions of the maternal seed-rosettes in relation to the pollen donor seed-rosettes of Encholirium horridum.
DOI: 10.5061/dryad.gm41t/10
title: Beast_50K

description: Beast tree
DOI: 10.5061/dryad.gm41t/11
title: Beast_50K.log

description: Beast log file
DOI: 10.5061/dryad.gm41t/12
title: Beast_50K.trees

description: Beast trees
DOI: 10.5061/dryad.hj6r1/1
title: Sclerobunus_PhasedMatrices_Derkarabetian&Hedin2014

description: Zip file containing fasta files for individual phased matrices for all genes used in this study.
DOI: 10.5061/dryad.hj6r1/2
title: Sclerobunus_GeneTrees_Derkarabetian&Hedin2014

description: Zip file containing individual gene trees estimated via RAxML for all genes used in this study.
DOI: 10.5061/dryad.jd5ff/1
title: Osmia MAFFT EF1a CAD opsin COI opsin_intron DRYAD

description: Phylogenetic matrix aligned using MAFFT, and character partitions.
DOI: 10.5061/dryad.jd5ff/2
title: Osmia MUSCLE EF1a CAD opsin COI opsin_intron DRYAD

description: Phylogenetic matrix aligned using MUSCLE, and character partitions
DOI: 10.5061/dryad.jd5ff/3
title: Table with Taxa Extraction numbers Genbank numbers

description: Table including information on taxa, extraction codes, voucher codes, and GenBank numbers.
DOI: 10.5061/dryad.n5rj9/1
title: viability_data_Aguirre.et.al

description: Data from: The genetic covariance between life-cycle stages separated by metamorphosis., Aguirre, J. David, Blows, Mark, Marshall, Dustin
DOI: 10.5061/dryad.p7s88/1
title: Volatile collection results for field and climate chamber, to accompany Fig 1.

description: Datura wrightii volatiles collected in field and climate chamber. Quantification of  (Z)-3- and (E)-2-isomers of hexenal, hexenol and hexenyl acetate. Data processing for Figure 1.
DOI: 10.5061/dryad.p7s88/3
title: Correlation of field GLV emission to flowernumber and percentaged plant damage, to accompany Fig 3.
DOI: 10.5061/dryad.p7s88/4
title: Correlation coefficients calculated from change in flourescence, to accompany Fig 4C.

description: Maximum change in fluorescence (delta F max) in response to odor stimulation calculated for correlations of (Z)-3- and (E)-2-isomers and of repeated measurements of the same isomer of each GLV.
DOI: 10.5061/dryad.p7s88/5
title: Change in flourescence in response to odor stimulation with GLVs, to accompany Fig 4B.
DOI: 10.5061/dryad.r8547/1
title: Brain weights and SLs of Nova Scotian sticklebacks
DOI: 10.5061/dryad.r8547/2
title: SNP Table for Nova Scotian Sticklebacks

description: A table of single nucleotide polymorphisms derived from a sample of males from six populations of Nova Scotian sticklebacks. Each row represents a position in the stickleback reference genome, and each column the genotype of an individual fish. See manuscript for population codes.
DOI: 10.5061/dryad.tr16k/2
title: Tomato_Biomass

description: This file contains data on growth of tomato plants (mg dry weight) infected by CMV with or without satRNAs (semicolon delimited format). Data was used to estimate virulence parameters according to Escriu et al. 2003 (Evolution 57, 755-765).
DOI: 10.7925/drs1.ucdlib_31852
title: 96 Grafton Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground, constructed 1881.
description: Dublin City Council, Record of Protected Structures (2010), no. 3255
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.