cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.586000
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22441-21

description: Species PCAB; No of rings 73; Begin 1448; End 1520
DOI: 10.1594/pangaea.620022
title: Tree-ring width of Abies alba (Miller) from historical object sample HOH1470-22

description: Species ABAL; No of rings 181; Begin 1038; End 1212
DOI: 10.1594/pangaea.620928
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22543-1

description: Species PCAB; No of rings 138; Begin 1653; End 1790
DOI: 10.1594/pangaea.584101
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21704-6

description: Species PCAB; No of rings 65; Begin 1704; End 1768
DOI: 10.1594/pangaea.676267
title: Tree-ring width of Quercus species from living tree sample HOH9186-398

description: Species QUSP; No of rings 117; Begin 1868; End 1984
DOI: 10.1594/pangaea.580322
title: Tree-ring width of Quercus species from historical object sample IB20535-3

description: Species QUSP; No of rings 107; Begin 969; End 1075
DOI: 10.1594/pangaea.586037
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22451-7

description: Species PCAB; No of rings 53; Begin 1342; End 1394
DOI: 10.1594/pangaea.585968
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22433-7

description: Species PCAB; No of rings 47; Begin 1614; End 1660
DOI: 10.1594/pangaea.586057
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22457-2

description: Species PCAB; No of rings 47; Begin 1392; End 1438
DOI: 10.1594/pangaea.568313
title: Tree-ring width of Quercus species from historical object sample HOF11493-1

description: Species QUSP; No of rings 40; Begin 1754; End 1793
DOI: 10.1594/pangaea.569311
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample HOF11749-5

description: Species PISY; No of rings 105; Begin 1643; End 1747
DOI: 10.1594/pangaea.567048
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample HOF11156-30

description: Species PISY; No of rings 43; Begin 1642; End 1684
DOI: 10.1594/pangaea.568317
title: Tree-ring width of Quercus species from historical object sample HOF11494-13

description: Species QUSP; No of rings 101; Begin 1469; End 1569
DOI: 10.1594/pangaea.605495
title: Tree-ring width of Quercus species from historical object sample HOF10188-41

description: Species QUSP; No of rings 142; Begin 1315; End 1456
DOI: 10.1594/pangaea.620554
title: Tree-ring width of Quercus species from historical object sample IB20707-5

description: Species QUSP; No of rings 42; Begin 1478; End 1519
DOI: 10.1594/pangaea.620820
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21683-10

description: Species PCAB; No of rings 47; Begin 1740; End 1786
DOI: 10.1594/pangaea.676468
title: Tree-ring width of Quercus species from living tree sample HOH9212-1905

description: Species QUSP; No of rings 263; Begin 1726; End 1988
DOI: 10.1594/pangaea.563978
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample HOF10426-3

description: Species PISY; No of rings 139; Begin 1519; End 1657
DOI: 10.1594/pangaea.657642
title: Tree-ring width of Quercus species from historical object sample IB22249-22

description: Species QUSP; No of rings 60; Begin 1743; End 1802
DOI: 10.1594/pangaea.585623
title: Tree-ring width of Quercus species from historical object sample IB22358-1

description: Species QUSP; No of rings 81; Begin 1371; End 1451
DOI: 10.1594/pangaea.585633
title: Tree-ring width of Quercus species from historical object sample IB22363-1

description: Species QUSP; No of rings 52; Begin 1546; End 1597
DOI: 10.1594/pangaea.586110
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22471-152

description: Species ABAL; No of rings 55; Begin 1511; End 1565
DOI: 10.1594/pangaea.620818
title: Tree-ring width of Quercus species from historical object sample IB21647-3

description: Species QUSP; No of rings 110; Begin 1639; End 1748
DOI: 10.1594/pangaea.675511
title: Tree-ring width of Quercus species from living tree sample HOH1634-1

description: Species QUSP; No of rings 108; Begin 1895; End 2002
DOI: 10.1594/pangaea.675793
title: Tree-ring width of Quercus species from living tree sample HOH9057-1885

description: Species QUSP; No of rings 198; Begin 1791; End 1988
DOI: 10.1594/pangaea.620882
title: Tree-ring width of Quercus species from historical object sample IB22240-3

description: Species QUSP; No of rings 43; Begin 1713; End 1755
DOI: 10.1594/pangaea.676490
title: Tree-ring width of Quercus species from living tree sample HOH9220-11

description: Species QUSP; No of rings 131; Begin 1855; End 1985
DOI: 10.1594/pangaea.676073
title: Tree-ring width of Pinus sylvestris (von Linné) from living tree sample HOH9137-999

description: Species PISY; No of rings 80; Begin 1908; End 1987
DOI: 10.1594/pangaea.676305
title: Tree-ring width of Pinus sylvestris (von Linné) from living tree sample HOH9188-2277

description: Species PISY; No of rings 163; Begin 1826; End 1988
DOI: 10.1594/pangaea.566563
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample HOF11052-9

description: Species PISY; No of rings 142; Begin 1692; End 1833
DOI: 10.1594/pangaea.583310
title: Tree-ring width of Quercus species from historical object sample IB21533-10

description: Species QUSP; No of rings 83; Begin 1215; End 1297
DOI: 10.1594/pangaea.609808
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22284-13

description: Species ABAL; No of rings 47; Begin 1743; End 1789
DOI: 10.1594/pangaea.657430
title: Tree-ring width of Quercus species from historical object sample HOH5122-2194

description: Species QUSP; No of rings 115; Begin 1165; End 1279
DOI: 10.1594/pangaea.565467
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF10792-8

description: Species PCAB; No of rings 52; Begin 1413; End 1464
DOI: 10.1594/pangaea.620375
title: Tree-ring width of Abies alba (Miller) from historical object sample IB20040-1

description: Species ABAL; No of rings 87; Begin 1535; End 1621
DOI: 10.1594/pangaea.579248
title: Tree-ring width of Quercus species from historical object sample IB20075-2

description: Species QUSP; No of rings 129; Begin 1324; End 1452
DOI: 10.1594/pangaea.582248
title: Tree-ring width of Quercus species from historical object sample IB21212-2

description: Species QUSP; No of rings 101; Begin 1345; End 1445
DOI: 10.1594/pangaea.579154
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB20003-5

description: Species PCAB; No of rings 42; Begin 1656; End 1697
DOI: 10.1594/pangaea.586038
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22451-8

description: Species PCAB; No of rings 62; Begin 1333; End 1394
DOI: 10.1594/pangaea.561676
title: Tree-ring width of Abies alba (Miller) from historical object sample HOF12903-6

description: Species ABAL; No of rings 43; Begin 1745; End 1787
DOI: 10.1594/pangaea.585476
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22307-8

description: Species ABAL; No of rings 57; Begin 1728; End 1784
DOI: 10.1594/pangaea.620365
title: Tree-ring width of Abies alba (Miller) from historical object sample IB20037-10

description: Species ABAL; No of rings 47; Begin 1615; End 1661
DOI: 10.1594/pangaea.577145
title: Tree-ring width of Quercus species from historical object sample HOH4188-249

description: Species QUSP; No of rings 157; Begin 1614; End 1770
DOI: 10.1594/pangaea.582178
title: Tree-ring width of Abies alba (Miller) from historical object sample IB21186-4

description: Species ABAL; No of rings 54; Begin 1256; End 1309
DOI: 10.1594/pangaea.561467
title: Tree-ring width of Abies alba (Miller) from historical object sample HOF12733-4

description: Species ABAL; No of rings 73; Begin 1496; End 1568
DOI: 10.1594/pangaea.586552
title: Tree-ring width of Quercus species from historical object sample IB22609-2

description: Species QUSP; No of rings 44; Begin 1589; End 1632
DOI: 10.1594/pangaea.585455
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22302-3

description: Species ABAL; No of rings 70; Begin 1511; End 1580
DOI: 10.1594/pangaea.586040
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22452-4

description: Species PCAB; No of rings 40; Begin 1389; End 1428
DOI: 10.1594/pangaea.584158
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21772-4

description: Species PCAB; No of rings 53; Begin 1770; End 1822
DOI: 10.1594/pangaea.676460
title: Tree-ring width of Quercus species from living tree sample HOH9210-4

description: Species QUSP; No of rings 327; Begin 1666; End 1992
DOI: 10.1594/pangaea.560679
title: Tree-ring width of Abies alba (Miller) from historical object sample HOF12101-1

description: Species ABAL; No of rings 92; Begin 1708; End 1799
DOI: 10.1594/pangaea.581409
title: Tree-ring width of Quercus species from historical object sample IB20856-1

description: Species QUSP; No of rings 89; Begin 1670; End 1758
DOI: 10.1594/pangaea.566440
title: Tree-ring width of Quercus species from historical object sample HOF11031-18

description: Species QUSP; No of rings 64; Begin 1664; End 1727
DOI: 10.1594/pangaea.578735
title: Tree-ring width of Quercus species from historical object sample HOH4947-28

description: Species QUSP; No of rings 51; Begin 1379; End 1429
DOI: 10.1594/pangaea.580494
title: Tree-ring width of Quercus species from historical object sample IB20564-7

description: Species QUSP; No of rings 122; Begin 1665; End 1786
DOI: 10.1594/pangaea.585417
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22257-1

description: Species PCAB; No of rings 73; Begin 1611; End 1683
DOI: 10.1594/pangaea.575365
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOH3127-10

description: Species PCAB; No of rings 47; Begin 1352; End 1398
DOI: 10.1594/pangaea.562494
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample HOF10107-13

description: Species PISY; No of rings 106; Begin 1733; End 1838
DOI: 10.1594/pangaea.619462
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF11188-14

description: Species PCAB; No of rings 63; Begin 1654; End 1716
DOI: 10.1594/pangaea.583105
title: Tree-ring width of Quercus species from historical object sample IB21455-1

description: Species QUSP; No of rings 83; Begin 1430; End 1512
DOI: 10.1594/pangaea.584681
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21880-10

description: Species PCAB; No of rings 60; Begin 1635; End 1694
DOI: 10.1594/pangaea.563959
title: Tree-ring width of Quercus species from historical object sample HOF10423-8

description: Species QUSP; No of rings 119; Begin 1490; End 1608
DOI: 10.1594/pangaea.609857
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22497-2

description: Species ABAL; No of rings 61; Begin 1468; End 1528
DOI: 10.1594/pangaea.569534
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF11786-10

description: Species PCAB; No of rings 48; Begin 1734; End 1781
DOI: 10.1594/pangaea.575661
title: Tree-ring width of Abies alba (Miller) from historical object sample HOH3283-1

description: Species ABAL; No of rings 121; Begin 1484; End 1604
DOI: 10.1594/pangaea.585410
title: Tree-ring width of Quercus species from historical object sample IB22256-2

description: Species QUSP; No of rings 68; Begin 1711; End 1778
DOI: 10.1594/pangaea.585395
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22243-1

description: Species PCAB; No of rings 71; Begin 1738; End 1808
DOI: 10.1594/pangaea.620140
title: Tree-ring width of Quercus species from historical object sample HOH4809-2418

description: Species QUSP; No of rings 105; Begin 1426; End 1530
DOI: 10.1594/pangaea.585361
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22227-3

description: Species ABAL; No of rings 75; Begin 1649; End 1723
DOI: 10.1594/pangaea.585377
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22232-16

description: Species ABAL; No of rings 55; Begin 1467; End 1521
DOI: 10.1594/pangaea.585379
title: Tree-ring width of Abies alba (Miller) from historical object sample IB22232-18

description: Species ABAL; No of rings 86; Begin 1436; End 1521
DOI: 10.1594/pangaea.585386
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB22238-1

description: Species PCAB; No of rings 42; Begin 1781; End 1822
DOI: 10.1594/pangaea.563768
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF10366-12

description: Species PCAB; No of rings 78; Begin 1817; End 1894
DOI: 10.1594/pangaea.584684
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21880-18

description: Species PCAB; No of rings 92; Begin 1419; End 1510
DOI: 10.1594/pangaea.563293
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF10268-2

description: Species PCAB; No of rings 54; Begin 1834; End 1887
DOI: 10.1594/pangaea.584664
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21862-22

description: Species PCAB; No of rings 42; Begin 1606; End 1647
DOI: 10.1594/pangaea.584772
title: Tree-ring width of Abies alba (Miller) from historical object sample IB21938-10

description: Species ABAL; No of rings 64; Begin 1316; End 1379
DOI: 10.1594/pangaea.584889
title: Tree-ring width of Quercus species from historical object sample IB21942-4

description: Species QUSP; No of rings 62; Begin 1835; End 1896
DOI: 10.1594/pangaea.584897
title: Tree-ring width of Quercus species from historical object sample IB21943-12

description: Species QUSP; No of rings 65; Begin 1310; End 1374
DOI: 10.1594/pangaea.584898
title: Tree-ring width of Quercus species from historical object sample IB21943-13

description: Species QUSP; No of rings 79; Begin 1295; End 1373
DOI: 10.1594/pangaea.584248
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample IB21798-29

description: Species PISY; No of rings 73; Begin 1554; End 1626
DOI: 10.1594/pangaea.584370
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21804-18

description: Species PCAB; No of rings 89; Begin 1644; End 1732
DOI: 10.1594/pangaea.563588
title: Tree-ring width of Quercus species from historical object sample HOF10319-1

description: Species QUSP; No of rings 48; Begin 1425; End 1472
DOI: 10.1594/pangaea.584350
title: Tree-ring width of Quercus species from historical object sample IB21803-23

description: Species QUSP; No of rings 93; Begin 1174; End 1266
DOI: 10.1594/pangaea.584181
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21784-11

description: Species PCAB; No of rings 66; Begin 1502; End 1567
DOI: 10.1594/pangaea.600364
title: Tree-ring measurements of Picea mariana (Black spruce) from sample WILLOUFE-442

description: Species PCMA; No of rings 158; Begin 1830; End 1987
DOI: 10.1594/pangaea.563457
title: Tree-ring width of Picea abies (Karsten) from historical object sample HOF10294-7

description: Species PCAB; No of rings 46; Begin 1509; End 1554
DOI: 10.1594/pangaea.586924
title: Tree-ring width of Abies alba (Miller) from historical object sample HOF10351-6

description: Species ABAL; No of rings 51; Begin 1470; End 1520
DOI: 10.1594/pangaea.605046
title: Tree-ring width of Pinus sylvestris (von Linné) of subfossil tree sample HOH2600-13

description: Species PISY; No of rings 104; Begin 1308; End 1411; Data are shown on a relative timescale as the chronology is still floating. A tentative match on the INTCAL04-timescale is given in Kromer, Friedrich et al. Radiocarbon 46(3), 2004. Data from DEKLIM-project PROSIMUL I (http://www.prosimul.de/)
DOI: 10.25375/uct.27134208
title: Data from: Worth the fuss? Maximising informativeness for target capture-based phylogenomics in <i>Erica</i> (Ericaceae)

description: Plant phylogenetics has been revolutionised in the genomic era, with target capture acting as theprimary workhorse of most recent research in the new field of phylogenomics. Target capture (akaHyb-Seq) allows researchers to sequence hundreds of genomic regions (loci) of their choosing, atrelatively low cost per sample, from which to derive phylogenetically informative data. Althoughthis highly flexible and widely applicable method has rightly earned its place as the field’s de factostandard, it does not come without its challenges. In particular, users have to specify which locito sequence—a surprisingly difficult task, especially when working with non-model groups, as itrequires pre-existing genomic resources in the form of assembled genomes and/or transcriptomes.In the absence of taxon-specific genomic resources, target sets exist that are designed to workacross broad taxonomic scales. However, the highly conserved loci that they target may lackinformativeness for difficult phylogenetic problems, such as that presented by the rapid radiationof Erica in southern Africa. We designed a target set for Erica phylogenomics intended tomaximise informativeness and minimise paralogy while maintaining universality by including genesfrom the widely used Angiosperms353 set. Comprising just over 300 genes, the targets hadexcellent recovery rates in roughly 90 Erica species as well as outgroups from Calluna, Daboecia,and Rhododendron, and had high information content as measured by parsimony informativesites and Quartet Internode Resolution Probability (QIRP) at shallow nodes. Notably, QIRP waspositively correlated with intron content, while including introns in targets—rather than recoveringthem via exon-flanking “bycatch”—substantially improved intron recovery. Overall, our resultsshow the value of building a custom target set, and we provide a suite of open-source tools thatcan be used to replicate our approach in other groups (github.com/SethMusker/TargetVet).
DOI: 10.25375/uct.27134208.v1
title: Data from: Worth the fuss? Maximising informativeness for target capture-based phylogenomics in <i>Erica</i> (Ericaceae)

description: Plant phylogenetics has been revolutionised in the genomic era, with target capture acting as theprimary workhorse of most recent research in the new field of phylogenomics. Target capture (akaHyb-Seq) allows researchers to sequence hundreds of genomic regions (loci) of their choosing, atrelatively low cost per sample, from which to derive phylogenetically informative data. Althoughthis highly flexible and widely applicable method has rightly earned its place as the field’s de factostandard, it does not come without its challenges. In particular, users have to specify which locito sequence—a surprisingly difficult task, especially when working with non-model groups, as itrequires pre-existing genomic resources in the form of assembled genomes and/or transcriptomes.In the absence of taxon-specific genomic resources, target sets exist that are designed to workacross broad taxonomic scales. However, the highly conserved loci that they target may lackinformativeness for difficult phylogenetic problems, such as that presented by the rapid radiationof Erica in southern Africa. We designed a target set for Erica phylogenomics intended tomaximise informativeness and minimise paralogy while maintaining universality by including genesfrom the widely used Angiosperms353 set. Comprising just over 300 genes, the targets hadexcellent recovery rates in roughly 90 Erica species as well as outgroups from Calluna, Daboecia,and Rhododendron, and had high information content as measured by parsimony informativesites and Quartet Internode Resolution Probability (QIRP) at shallow nodes. Notably, QIRP waspositively correlated with intron content, while including introns in targets—rather than recoveringthem via exon-flanking “bycatch”—substantially improved intron recovery. Overall, our resultsshow the value of building a custom target set, and we provide a suite of open-source tools thatcan be used to replicate our approach in other groups (github.com/SethMusker/TargetVet).
DOI: 10.1594/pangaea.582839
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21415-8

description: Species PCAB; No of rings 66; Begin 1717; End 1782
DOI: 10.1594/pangaea.582749
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21354-20

description: Species PCAB; No of rings 77; Begin 1232; End 1308
DOI: 10.1594/pangaea.582782
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21359-3

description: Species PCAB; No of rings 83; Begin 1657; End 1739
DOI: 10.1594/pangaea.582808
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21387-7

description: Species PCAB; No of rings 64; Begin 1646; End 1709
DOI: 10.1594/pangaea.582606
title: Tree-ring width of Pinus sylvestris (von Linné) from historical object sample IB21331-9

description: Species PISY; No of rings 58; Begin 1686; End 1743
DOI: 10.1594/pangaea.582767
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21355-2

description: Species PCAB; No of rings 88; Begin 1599; End 1686
DOI: 10.1594/pangaea.582760
title: Tree-ring width of Quercus species from historical object sample IB21354-35

description: Species QUSP; No of rings 196; Begin 1467; End 1662
DOI: 10.1594/pangaea.582815
title: Tree-ring width of Quercus species from historical object sample IB21402-11

description: Species QUSP; No of rings 134; Begin 1404; End 1537
DOI: 10.1594/pangaea.582404
title: Tree-ring width of Quercus species from historical object sample IB21276-5

description: Species QUSP; No of rings 68; Begin 1414; End 1481
DOI: 10.1594/pangaea.582503
title: Tree-ring width of Abies alba (Miller) from historical object sample IB21313-24

description: Species ABAL; No of rings 49; Begin 1544; End 1592
DOI: 10.1594/pangaea.582504
title: Tree-ring width of Abies alba (Miller) from historical object sample IB21313-25

description: Species ABAL; No of rings 65; Begin 1509; End 1573
DOI: 10.1594/pangaea.582554
title: Tree-ring width of Quercus species from historical object sample IB21324-4

description: Species QUSP; No of rings 68; Begin 1380; End 1447
DOI: 10.1594/pangaea.582379
title: Tree-ring width of Quercus species from historical object sample IB21251-7

description: Species QUSP; No of rings 102; Begin 1512; End 1613
DOI: 10.1594/pangaea.582531
title: Tree-ring width of Abies alba (Miller) from historical object sample IB21316-4

description: Species ABAL; No of rings 100; Begin 1507; End 1606
DOI: 10.1594/pangaea.582512
title: Tree-ring width of Quercus species from historical object sample IB21313-6

description: Species QUSP; No of rings 149; Begin 1443; End 1591
DOI: 10.1594/pangaea.676420
title: Tree-ring width of Pinus sylvestris (von Linné) from living tree sample HOH9200-1585

description: Species PISY; No of rings 116; Begin 1872; End 1987
DOI: 10.1594/pangaea.582340
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21245-6

description: Species PCAB; No of rings 53; Begin 1456; End 1508
DOI: 10.1594/pangaea.582380
title: Tree-ring width of Quercus species from historical object sample IB21251-8

description: Species QUSP; No of rings 127; Begin 1492; End 1618
DOI: 10.1594/pangaea.582078
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21161-23

description: Species PCAB; No of rings 62; Begin 1673; End 1734
DOI: 10.1594/pangaea.582402
title: Tree-ring width of Quercus species from historical object sample IB21276-3

description: Species QUSP; No of rings 93; Begin 1389; End 1481
DOI: 10.1594/pangaea.582363
title: Tree-ring width of Picea abies (Karsten) from historical object sample IB21250-6

description: Species PCAB; No of rings 134; Begin 1434; End 1567