cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28848143
title: Supplementary Material for: Identification and verification of B4GALNT2 as an epigenetic marker in ulcerative colitis

description: Background: Ulcerative colitis represents an inflammatory bowel disease characterized with a multifaceted pathogenesis, which may be attributed to influenced by genetic factors. This study aimed to identify and validate novelmarkers associated with ulcerative colitis, with a specific focuc on their regulation through DNA methylation. Methods: Gene expression and DNA methylation profiling of intestinal mucosal tissues from ulcerative colitis and healthy controls was retrieved from the GEO repository. Differentially expressed and methylated genes were examined in ulcerative colitis. Subsequently, overlapped analyses were performed to identify highly expressed and hypomethylated genes, as well as lowly expressed and hypermethylated genes. Functional annotation, transcription factor-mRNA network analysis and protein-protein interaction (PPI) network analysis were conducted for above genes. DSS-induced LOVO and Caco-2 cells were established to stimulate ulcerative colitis injury. The expression and methylation of B4GALNT2 was verified by RT-qPCR and MSP. CCK-8, flow cytometry, western blot, and ELISA were used to measure cell survival, apoptosis, and cytokine levels after B4GALNT2 overexpression. Results: Our study screened 1 down-regulated and hypermethylated gene (B4GALNT2) and 114 up-regulated and hypomethylated genes in ulcerative colitis. They were markedly associated with immune response. Totally, 10 potential transcription factors were predicted. The PPI network revealed their complex interactions. B4GALNT2 was confirmed to be down-regulated and hypermethylated in DSS-induced intestinal epithelial cells. B4GALNT2 overexpression enhanced cell viability and weakened apoptosis and cytokine production and release of DSS-induced intestinal epithelial cells. Conclusion: Collectively, this study integrally analyzed DNA methylation and gene expression in ulcerative colitis as well as identified and verified B4GALNT2 as a key epigenetic marker.
DOI: 10.6084/m9.figshare.28848143.v1
title: Supplementary Material for: Identification and verification of B4GALNT2 as an epigenetic marker in ulcerative colitis

description: Background: Ulcerative colitis represents an inflammatory bowel disease characterized with a multifaceted pathogenesis, which may be attributed to influenced by genetic factors. This study aimed to identify and validate novelmarkers associated with ulcerative colitis, with a specific focuc on their regulation through DNA methylation. Methods: Gene expression and DNA methylation profiling of intestinal mucosal tissues from ulcerative colitis and healthy controls was retrieved from the GEO repository. Differentially expressed and methylated genes were examined in ulcerative colitis. Subsequently, overlapped analyses were performed to identify highly expressed and hypomethylated genes, as well as lowly expressed and hypermethylated genes. Functional annotation, transcription factor-mRNA network analysis and protein-protein interaction (PPI) network analysis were conducted for above genes. DSS-induced LOVO and Caco-2 cells were established to stimulate ulcerative colitis injury. The expression and methylation of B4GALNT2 was verified by RT-qPCR and MSP. CCK-8, flow cytometry, western blot, and ELISA were used to measure cell survival, apoptosis, and cytokine levels after B4GALNT2 overexpression. Results: Our study screened 1 down-regulated and hypermethylated gene (B4GALNT2) and 114 up-regulated and hypomethylated genes in ulcerative colitis. They were markedly associated with immune response. Totally, 10 potential transcription factors were predicted. The PPI network revealed their complex interactions. B4GALNT2 was confirmed to be down-regulated and hypermethylated in DSS-induced intestinal epithelial cells. B4GALNT2 overexpression enhanced cell viability and weakened apoptosis and cytokine production and release of DSS-induced intestinal epithelial cells. Conclusion: Collectively, this study integrally analyzed DNA methylation and gene expression in ulcerative colitis as well as identified and verified B4GALNT2 as a key epigenetic marker.
DOI: 10.15468/dl.akdjrz
title: Occurrence Download

description: A dataset containing 182221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Myotis daubentonii (Kuhl, 1817)"
 ]
}

 The dataset includes 182221 records from 2190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011439-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crftm5
title: Occurrence Download

description: A dataset containing 131159 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Evaluación de la dinámica pesquera en la cuenca media y baja del río Cauca, en el marco del Proyecto Hidroeléctrico Ituango durante los años 2016 – 2020"
 ]
}

 The dataset includes 131159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000825-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e63-d49-wx3
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gy5-5v8-75k
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/24w-t25-80t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3vt-pbn-51c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9yw-k9k-qlz
title: Holcophylloceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm7-ybd-5tt
title: Cytheropteron (Cytheropteron) Sars, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xbw-2db-zj0
title: Callianassa Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/106-r8n-yff
title: Kilianella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bv-gl3-grn
title: †Heteropora crassa Canu, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5y2-3m5-nfv
title: Heteroscleromorpha Cárdenas, Pérez & Boury-Esnault, 2012

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yyg-94d-tj4
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ltw-qj6-25r
title: Trisopterus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/szg-eq4-fvg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qbr-6je-caf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k2r-ynt-e0d
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pg0-ygv-71m
title: Aves

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bw-6jq-5aa
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cks-ysm-l62
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6l2-kss-jq2
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lj4-tr4-6cm
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9s1-pqc-jc5
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hj4-2lx-efh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmw-yf4-9bm
title: Raja

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dp3-8fw-mnc
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ese-f47-qh7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mly-szg-w0s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v3d-rnw-lqv
title: Capra hircus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/era-rqe-aer
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a80-rdy-496
title: Squalus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yhq-cn5-4an
title: Galeus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1vt-pbv-3hm
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qe4-hmt-da9
title: Lamnidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cex-3gc-2v8
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7av-twr-q2c
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w39-7wp-k49
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9wb-ddg-fc5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gt1-1wa-aal
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/khr-dep-92z
title: Bos taurus primigenius Bojanus, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pxz-q6z-jg4
title: Squalus acanthias Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e6j-26m-a06
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxb-0wd-0a8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0am-3td-6ax
title: †Balanophyllia oppenheimi Felix, 1913

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kqm-ycp-dlr
title: Paradoxostoma Fischer, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/02q-6y0-e6t
title: †Micraster L. Agassiz, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/njy-lb6-etc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25549/inscriptifact-ouc110819801
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110819938
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110821110
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110821099
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820795
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110821072
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820969
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820767
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.15468/x4z5ac
title: Revision of the sesarmid crab genera Labuanium Serène and Soh, 1970, Scandarma Schubart, Liu and Cuesta, 2003 and Namlacium Serène and Soh, 1970 (Crustacea: Decapoda: Brachyura: Sesarmidae), with descriptions of four new genera and two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Naruse, Tohru, Ng, Peter K. L. (2020): Revision of the sesarmid crab genera Labuanium Serène and Soh, 1970, Scandarma Schubart, Liu and Cuesta, 2003 and Namlacium Serène and Soh, 1970 (Crustacea: Decapoda: Brachyura: Sesarmidae), with descriptions of four new genera and two new species. Journal of Natural History (J. Nat. Hist.) 54 (7 - 8): 445-532, DOI: 10.1080/00222933.2020.1763491, URL: http://dx.doi.org/10.1080/00222933.2020.1763491ABSTRACTThe systematics of the arboreal sesarmid crab genera Labuanium Serène and Soh, 1970 and Scandarma Schubart, Liu and Cuesta, 2003 is revised. Also included is the poorly known genus Namlacium Serène and Soh, 1970, which is morphologically similar to Labuanium and may also be arboreal in habit. The present study restricts Labuanium to its type species, L. politum (De Man, 1887), and congeners are transferred to Scandarma, Geosesarma De Man, 1892, and three new genera established herein: Circulium gen. nov., Shinobium gen. nov. and Mindanium gen. nov. Two new species of Scandarma are described from Papua New Guinea and Madagascar. Sesarma jacquinoti Ortmann, 1894, previously regarded as a synonym of Scandarma gracilipes (H. Milne Edwards, 1853) (comb. nov.), is here shown to be a junior synonym of Sesarmops angustifrons (A. Milne-Edwards, 1869). Labuanium schuetteii (Hess, 1865) is regarded as conspecific with Scandarma gracilipes (H. Milne Edwards, 1853) (comb. nov.) and the lectotype of the latter species (here designated) is also selected as the neotype of the former, making the two names objective synonyms. Material which had been identified as ‘ Labuanium finni Alcock, 1900 ’ by Pretzmann (1984) from the South Andaman Islands is actually the poorly known Geosesarma thelxinoe (De Man, 1908), which is here referred to a new genus, Andamanium gen. nov. Sesarma finni Alcock, 1900 s.s. is herein assigned to Scandarma. Namlacium crepidatum (Calman, 1925), the only species in the genus, is redescribed and figured and compared with Labuanium and Scandarma. Keys to species of Circulium and Scandarma are provided.http: //www.zoobank.org/ urn:lsid:zoobank. org:pub: 414B8DAA-584F-4070-A355-83B583D0D017
DOI: 10.15468/k5cbxa
title: Nebria (Patrobonebria) paropamisos, a new species from the Hindu Kush (Coleoptera, Carabidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huber, Charles, Schmidt, Joachim, Baur, Hannes (2013): Nebria (Patrobonebria) paropamisos, a new species from the Hindu Kush (Coleoptera, Carabidae). Contributions to Natural History 22: 1-14, DOI: 10.5169/seals-786946
DOI: 10.15468/dl.aj6f6e
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philine orientalis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019464-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/23eka2
title: A revision of Homalium sect. Nisa (Salicaceae) endemic to Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wassel, Anna C., Applequist, Wendy L. (2020): A revision of Homalium sect. Nisa (Salicaceae) endemic to Madagascar. Candollea 75 (1): 1-23, DOI: 10.15553/c2020v751a1AbstractWASSEL, A.C. & W.L. APPLEQUIST (2020). A revision of Homalium sect. Nisa (Salicaceae) endemic to Madagascar. Candollea 75: 1–23. In English, English & French abstracts. DOI: http://dx.doi.org/ 10.15553/c2020v751a1Homalium sect. Nisa (Noronha ex Thouars) Baill. is endemic to Madagascar and has included four recognized species. A new revisionary treatment of the section is presented and an identification key is provided. Eleven species are recognized, including eight that were formerly part of the Homalium nudiflorum (DC.) Baill. species complex. Four species and one subspecies are newly described: Homalium antilahimenae Wassel & Appleq., Homalium mandenense Wassel & Appleq., Homalium pachycladum Wassel & Appleq., Homalium tenue Wassel & Appleq., and Homalium stelliferum subsp. andapense Wassel & Appleq. Homalium ciliolatum (Sleumer) Wassel & Appleq. is newly recognized at species level and the new combination Homalium retusum (Blume) Wassel & Appleq. is further published. Four lectotypes are designated including a second step. Taxonomic novelties are provided with line drawings or scans of their holotypes. Risk of extinction assessments indicate that three taxa are “Endangered” and three “Vulnerable”. Occasional hybridization is observed. Some specimens are not classifiable and it is possible that other unrecognized species exist.
DOI: 10.15468/wvk4s2
title: Taxonomic and nomenclatural notes on Chilean Senecio (Asteraceae, Senecioneae), including a new particular species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Calvo, Joel, Saldivia, Patricio (2022): Taxonomic and nomenclatural notes on Chilean Senecio (Asteraceae, Senecioneae), including a new particular species. Phytotaxa 556 (1): 76-86, DOI: 10.11646/phytotaxa.556.1.6, URL: http://dx.doi.org/10.11646/phytotaxa.556.1.6AbstractAs part of ongoing studies on the genus Senecio in Chile, we here synonymize the name S. phylloleptus with S. reicheanus, as well as S. behnii with the retrieved name S. eriocladus. Furthermore, the original concept of S. coquimbensis is reestablished and its nomenclatural implications detailed. Finally, the identity and presence of S. saxicola in Chile is clarified and the new species S. ephemerus is described.