cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17187102
title: data for "A Comprehensive analysis of High Resolution VHF Observations with LOFAR of the Positive Initiating Event for Several Lightning Flashes"

description: Data for the figures in "A Comprehensive analysis of High Resolution VHF Observations with LOFAR of the Positive Initiating Event for Several Lightning Flashes"

For each figure the .pdf of the figure is supplied as well as the .gle script used to generate the figures. The .gle script is human readable.The data-files used by the different .gle scripts are all stored in the folder /files/ where all files are plain ascii files. These files contain the raw data for the sources given in the various figures, where each line in these files corresponds to a source and the columns are labeled in each file. One may always refer back to the .gle scripts to learn what is plotted precisely.
DOI: 10.5281/zenodo.17187103
title: data for "A Comprehensive analysis of High Resolution VHF Observations with LOFAR of the Positive Initiating Event for Several Lightning Flashes"

description: Data for the figures in "A Comprehensive analysis of High Resolution VHF Observations with LOFAR of the Positive Initiating Event for Several Lightning Flashes"

For each figure the .pdf of the figure is supplied as well as the .gle script used to generate the figures. The .gle script is human readable.The data-files used by the different .gle scripts are all stored in the folder /files/ where all files are plain ascii files. These files contain the raw data for the sources given in the various figures, where each line in these files corresponds to a source and the columns are labeled in each file. One may always refer back to the .gle scripts to learn what is plotted precisely.
DOI: 10.26023/ndym-1af3-bn0h
title: Lake-ICE: High Resolution Research Soundings from Greenville, Michigan. Version 1.0

description: This data set contains ten second vertical resolution sounding data for Greenville, Michigan. This site was operated by the Atmospheric Technology Division (ATD) of the University Corporation for Atmospheric Research (UCAR). This data set has undergone ATD and The Joint Office of Science Support (JOSS) quality control procedures. See the README for more information. Note, the README contains a complete list of rawinsonde release times for Greenville.
DOI: 10.15468/dl.se5re8
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum sessiliflorum"
 ]
}

 The dataset includes 611 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040893-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/ky7g-4brj-gp0v
title: Lake-ICE: High Resolution Research Soundings from Owens Sound, Ontario Canada. Version 1.0

description: This data set contains ten second vertical resolution sounding data from Owens Sound ,Ontario Canada. This site was operated by the Atmospheric Technology Division (ATD) of the University Corporation for Atmospheric Research (UCAR). This data set has undergone ATD and UCAR's Joint Office of Science Support (JOSS) quality control procedures. See the README for more information. Note, the README contains a complete list of Owens Sound rawinsonde release times.
DOI: 10.5281/zenodo.17203862
title: Global detection of 915 SARS-CoV-2 genomes encoding a high-risk VYD2311 escape haplotype (F486P+S371F+K444T+N460K+R346T) in 2023 - 2024 surveillance data

description: VYD2311 HIGH-RISK ESCAPE CONSTELLATION SURVEILLANCE==================================================

Target constellation: F486P + S371F + K444T + N460K + R346TReference: Wuhan-Hu-1 (NC_045512.2)Total genomes analysed: 9,356,279Genomes with full 5-mutation constellation: 915

Sample matching sequences:  1. USA/MA-Broad_MGH-16621/2023  2. USA/CO-CDPHE-41673449/2024  3. USA/CA-SEARCH-233211/2024  4. Switzerland/BE-IFIK-231106_os_12/2023  5. USA/CA-CDPH-500130502/2023..915. Interpretation:- This constellation disrupts the VYD2311 epitope at 5 critical residues.
DOI: 10.5281/zenodo.17203863
title: Global detection of 915 SARS-CoV-2 genomes encoding a high-risk VYD2311 escape haplotype (F486P+S371F+K444T+N460K+R346T) in 2023 - 2024 surveillance data

description: VYD2311 HIGH-RISK ESCAPE CONSTELLATION SURVEILLANCE==================================================

Target constellation: F486P + S371F + K444T + N460K + R346TReference: Wuhan-Hu-1 (NC_045512.2)Total genomes analysed: 9,356,279Genomes with full 5-mutation constellation: 915

Sample matching sequences:  1. USA/MA-Broad_MGH-16621/2023  2. USA/CO-CDPHE-41673449/2024  3. USA/CA-SEARCH-233211/2024  4. Switzerland/BE-IFIK-231106_os_12/2023  5. USA/CA-CDPH-500130502/2023..915. Interpretation:- This constellation disrupts the VYD2311 epitope at 5 critical residues.
DOI: 10.15468/dl.8t6w2g
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.3.15_1",
 "TaxonKey is Danaus plexippus"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040894-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtq3yb
title: Occurrence Download

description: A dataset containing 2594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schima superba)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2594 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040895-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17053653
title: CAI in SARS-CoV-2: Host-Adapted Codon Usage at Scale (n = 9,394,000)

description: Dataset: CAI_SCORESSource: cai_scores_file_2.zipDescription: Codon Adaptation Index (CAI) scores for SARS-CoV-2 genomes.

Total TSV files: 1Sample file: cai_scores.tsvTotal genomic records: 9,394,000Columns: strain,date,lineage,accession,S_mutations,E_mutations,M_mutations,N_mutations,S_cai,E_cai,M_cai,N_cai,total_mutationsData Preview:  Row 1: unknown,unknown,Other,USA/CA-LACPHL-A,,,,,0.65843, ...  Row 2: unknown,unknown,Other,USA/CA-CDC-FG-1,S:654Y>N;S:1 ...  Row 3: unknown,unknown,Other,USA/PA-BOL-M211,S:298K>syn;S ...

----------------------------------------------------------------------------

Researcher: tahirhb@hotmail.com

+971509508358
DOI: 10.5281/zenodo.17053652
title: CAI in SARS-CoV-2: Host-Adapted Codon Usage at Scale (n = 9,394,000)

description: Dataset: CAI_SCORESSource: cai_scores_file_2.zipDescription: Codon Adaptation Index (CAI) scores for SARS-CoV-2 genomes.

Total TSV files: 1Sample file: cai_scores.tsvTotal genomic records: 9,394,000Columns: strain,date,lineage,accession,S_mutations,E_mutations,M_mutations,N_mutations,S_cai,E_cai,M_cai,N_cai,total_mutationsData Preview:  Row 1: unknown,unknown,Other,USA/CA-LACPHL-A,,,,,0.65843, ...  Row 2: unknown,unknown,Other,USA/CA-CDC-FG-1,S:654Y>N;S:1 ...  Row 3: unknown,unknown,Other,USA/PA-BOL-M211,S:298K>syn;S ...

----------------------------------------------------------------------------

Researcher: tahirhb@hotmail.com

+971509508358
DOI: 10.15468/dl.bgugaf
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ajuga chamaepitys",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 80 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040896-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/7d3z-pb3y-8202
title: Lake-ICE: High Resolution Research Soundings from Sudbury, Ontario Canada. Version 1.0

description: This data set contains ten second vertical resolution sounding data from Sudbury, Ontario Canada. This site was operated by the Atmospheric Technology Division (ATD) of the University Corporation for Atmospheric Research (UCAR). This data set has undergone ATD and The Joint Office of Science Support (JOSS) quality control procedures. See the README for more information. Note, the README contains a complete list of rawinsonde release times for Sudbury.
DOI: 10.15468/dl.usz3kx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ajuga chamaepitys",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040897-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17052660
title: tAI in SARS-CoV-2: Persistent Selection on Translational Efficiency (n = 9,356,279)

description: Dataset: TAI_RESULTSSource: tAi-done-results.zipDescription: tRNA Adaptation Index (tAI) results for SARS-CoV-2 genomes.

Total TSV files: 1Sample file: translational_speed.tsvTotal genomic records: 9,356,279Columns: strain,date,lineage,accession,S_mutations,E_mutations,M_mutations,N_mutations,S_speed,E_speed,M_speed,N_speed,total_mutationsData Preview:  Row 1: unknown,unknown,Other,USA/CA-LACPHL-A,,,,,0.651493 ...  Row 2: unknown,unknown,Other,USA/CA-CDC-FG-1,S:654Y>N;S:1 ...  Row 3: unknown,unknown,Other,USA/PA-BOL-M211,S:298K>syn;S ...

----------------------------------------------------------

Researcher : Tahir, H. B. | Email: tahirhb@hotmail.com
DOI: 10.5281/zenodo.17052661
title: tAI in SARS-CoV-2: Persistent Selection on Translational Efficiency (n = 9,356,279)

description: Dataset: TAI_RESULTSSource: tAi-done-results.zipDescription: tRNA Adaptation Index (tAI) results for SARS-CoV-2 genomes.

Total TSV files: 1Sample file: translational_speed.tsvTotal genomic records: 9,356,279Columns: strain,date,lineage,accession,S_mutations,E_mutations,M_mutations,N_mutations,S_speed,E_speed,M_speed,N_speed,total_mutationsData Preview:  Row 1: unknown,unknown,Other,USA/CA-LACPHL-A,,,,,0.651493 ...  Row 2: unknown,unknown,Other,USA/CA-CDC-FG-1,S:654Y>N;S:1 ...  Row 3: unknown,unknown,Other,USA/PA-BOL-M211,S:298K>syn;S ...

----------------------------------------------------------

Researcher : Tahir, H. B. | Email: tahirhb@hotmail.com
DOI: 10.26023/67vz-3bn5-1p0h
title: Lake-ICE: High Resolution Research Soundings from Timmims, Ontario Canada. Version 1.0

description: This data set contains ten second vertical resolution sounding data from Timmims ,Ontario Canada. This site was operated by the Atmospheric Technology Division (ATD) of the University Corporation for Atmospheric Research (UCAR). This data set has undergone ATD and UCAR's Joint Office of Science Support (JOSS) quality control procedures. See the README for more information. Note, the README contains a complete list of Timmims rawinsonde release times.
DOI: 10.25574/28879
title: Chandra X-ray Observatory ObsId 28879

description: The Chandra Nearby Young Stars Cool Attitude Survey (NYSCATS)
DOI: 10.25574/28880
title: Chandra X-ray Observatory ObsId 28880

description: Ultra-Deep Chandra Monitoring of the JWST-NEP Time Domain Field
DOI: 10.26023/yszc-k7gj-vq01
title: Lake-ICE: United States National Weather Service High-Resolution Sounding Composite. Version 1.0

description: This data set consists of six second vertical resolution sounding data for all United States sounding locations. These sites were operated by the US National Weather Service. Soundings were taken two times per day at 0000 and 1200 UTC. These data have undergone the JOSS automated quality control procedure. See the README for more information.
DOI: 10.15468/dl.xdys5v
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespidae",
 "Year is 1949",
 "Continent is North America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040898-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17253218
title: Ground truths for mesmerize-core tests.

description: Ground truths for mesmerize-core tests (https://github.com/nel-lab/mesmerize-core)

This version updates the CNMF correlation image to match the motion correction correlation image, for PR #340.
DOI: 10.26023/1p0r-hdn1-bd10
title: Lake-ICE Surface: Great Lakes Environmental Research Laboratory Data. Version 1.0

description: This data set contains the Great Lakes Environmental Research Laboratory Buoy, CMAN, U.S. Coast Guard, Ships, Surface Airways, and Other Marine Reports stations. Measurements were collected at hourly or incremental intervals. These data have not undergone the JOSS automated quality control procedure. See the README for more information.
DOI: 10.15468/dl.k3ukk8
title: Occurrence Download

description: A dataset containing 17928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schizachyrium scoparium)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17928 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040899-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3d4qs
title: Occurrence Download

description: A dataset containing 5363 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna Íctica Nativa Continental de Chile"
 ]
}

 The dataset includes 5363 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040900-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/100y-mqn6-5h14
title: Lake-ICE upper air: Canadian Manadatory/Significant Level Soundings. Version 1.0

description: This data set consists of mandatory and significant level sounding data in WMO/GTS format for the six Canadian sounding locations within the Lake-ICE area of interest. This includes Maniwaki, Quebec (PQ) (WMO 71722); La Grande IV, PQ (WMO 71823); Moosonee, PQ (WMO 71836); Pickle Lake, ON (WMO 71845); The Pas, MB (WMO 71867); and Shilo, MB (WMO 71853) which were operated by the Canadian Atmospheric Environment Service. Soundings were taken two time per day at 0000 and 1200 UTC. These data have undergone no quality control. The high-resolution soundings from these sites will be available at a later date.
DOI: 10.15468/dl.raavpu
title: Occurrence Download

description: A dataset containing 430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-112.94730 -32.90559,38.94730 -32.90559,38.94730 27.90559,-112.94730 27.90559,-112.94730 -32.90559))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Theobroma grandiflorum"
 ]
}

 The dataset includes 430 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040901-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n27qe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymosiphon grandiflorus",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040902-250920141307145/datasets/export for details.
DOI: 10.15468/dl.kq6m2p
title: Occurrence Download

description: A dataset containing 41402156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.5.42_1, USA.5.56_1, USA.5.19_1, USA.5.30_1, USA.5.37_1, USA.5.36_1)",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 41402156 records from 555 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040847-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyg3uw
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petrosimonia brachyphylla (Bunge) Iljin"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071468-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9j44r6
title: Occurrence Download

description: A dataset containing 3841 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zentrygon costaricensis (Lawrence, 1868)"
 ]
}

 The dataset includes 3841 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120452-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sgt52
title: Occurrence Download

description: A dataset containing 1335 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocnemis lewyana Duméril, 1852"
 ]
}

 The dataset includes 1335 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145399-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xratap
title: Occurrence Download

description: A dataset containing 745231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium aparine L."
 ]
}

 The dataset includes 745231 records from 2566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036089-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/0a832a55148a4661
title: Custom collection of categorize data from Lindenberg on 5 Apr 2025
DOI: 10.15156/bio/sh0201644.10fu
title: SH0201644.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0201645.10fu
title: SH0201645.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0201646.10fu
title: SH0201646.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0201647.10fu
title: SH0201647.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.