cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5797748
title: Forced Continuance Intention Model of Distance Online Teaching during CoVID-19 outbreak at University of Maribor, Slovenia [Project documentation]

description: The outbreak of COVID -19 forced most universities into distance education. Three didacticians and researchers from the University of Maribor, Slovenia: Kosta Dolenc, Mateja Ploj Virtič and Andrej Šorgo formed a self-initiated initiative project group during the COVID -19 epidemic and started the project with the working title: The Side Effects of Forced Online Distance Education (FODE). The aim of the first study, conducted during the first wave of the epidemic in March 2020, was to investigate the response of university teachers to the new situation. The project documentation provided for the Forced Online Distance Teaching (FODT) consist of: abstract, instrument, copy of the descriptive statistics, and SPSS dataset.
description: This work was supported by the Slovenian Research Agency under the core projects: "Information systems", grant no. P2-0057 (Šorgo Andrej) and "Computationally intensive complex systems", grant no. P1-0403 (Ploj Virtič Mateja). The authors declared that there were no conflicts of interest and that the opinions expressed were those of the authors. For the English translation of the instrument, see the articles cited in the Introduction (see Appendix).
description: {"references": ["Dolenc, K., \u0160orgo, A., Ploj Virti\u010d, M. (2021). Forced Continuance Intention Model of Distance Online Teaching during CoVID-19 outbreak [submitted manuscript]", "\u0160orgo, A., Ploj Virti\u010d, M., Dolenc, K. (2021). Differences in personal innovativeness in the domain of information technology among university students and teachers [submitted manuscript]", "Dolenc, K., \u0160orgo, A., Ploj Virti\u010d, M. (2021). The difference in views of educators and students on Forced Online Distance Education can lead to unintentional side effects. Education and Information Technologies [accepted manuscript], https://www.10.1007/s10639-021-10558-4", "\u0160orgo, A., Ploj Virti\u010d, M., Dolenc, K. (2020). Razlike med univerzitetnimi u\u010ditelji in \u0161tudenti v osebni inovativnosti na podro\u010dju informacijskih tehnologij. V: Inovativna uporaba IKT v visokem \u0161olstvu: izzivi in prilo\u017enosti: konferenca IKTVVIS, online, 24. - 25. september 2020. Ljubljana: IKTVVIS. 2020, http://iktvvis.si/SekcijaC21.html#povzetek10", "Dolenc, K., \u0160orgo, A., Ploj Virti\u010d, M. (2020). Vsiljeni napovedni model uporabe informacijskih tehnologij na podro\u010dju spletnih u\u010dnih okolij v pou\u010devanju na daljavo na primeru Univerze v Mariboru. V: Inovativna uporaba IKT v visokem \u0161olstvu: izzivi in prilo\u017enosti: konferenca IKTVVIS, online, 24. - 25. september 2020. Ljubljana: IKTVVIS. 2020, http://iktvvis.si/SekcijaCC12.html#povzetek30"]}
DOI: 10.5281/zenodo.5797751
title: Students' perceived obstacles with Forced Online Distance Learning during the CoVID-19 outbreak and their preferences to continue with the introduced teaching methods after the reopening of the University of Maribor [Project documentation]

description: The outbreak of COVID -19 forced most universities into distance education. Three didacticians and researchers from the University of Maribor, Slovenia: Kosta Dolenc, Mateja Ploj Virtič and Andrej Šorgo formed a self-initiated initiative project group during the COVID -19 epidemic and started the first project with the working title: The Side Effects of Forced Online Distance Education (FODE). The aim of the second study, conducted during the first wave of the epidemic in March 2020, was to investigate the response of university students to the new situation. The project documentation provided for the Forced Online Distance Learning (FODL) consists of: abstract, instrument, copy of the descriptive statistics, and SPSS dataset.
description: This work was supported by the Slovenian Research Agency under the core projects: "Information systems", grant no. P2-0057 (Šorgo Andrej) and "Computationally intensive complex systems", grant no. P1-0403 (Ploj Virtič Mateja). The authors declared that there were no conflicts of interest and that the opinions expressed were those of the authors. For the English translation of the instrument, see the articles cited in the Introduction (see Appendix).
description: {"references": ["Ploj Virti\u010d, M., Dolenc, K., & \u0160orgo, A. (2021). Changes in online distance learning behaviour of university students during the Coronavirus disease 2019 outbreak, and development of the model of forced distance online learning preferences. European Journal of Educational Research, 10(1), 393-411. https://doi.org/10.12973/eu-jer.10.1.393", "\u0160orgo, A., Ploj Virti\u010d, M., Dolenc, K. (2021). Differences in personal innovativeness in the domain of information technology among university students and teachers [submitted manuscript]", "Dolenc, K., \u0160orgo, A., Ploj Virti\u010d, M. (2021). The difference in views of educators and students on Forced Online Distance Education can lead to unintentional side effects. Education and Information Technologies [accepted manuscript], https://www.10.1007/s10639-021-10558-4", "Ploj Virti\u010d, M., Dolenc, K., \u0160orgo, A. (2020). \u0160tudij na daljavo na Univerzi v Mariboru v \u010dasu izbruha CoVID-19 in napovedni model \u0161tudija na daljavo za \u010das po ponovnem odprtju univerze. V: Inovativna uporaba IKT v visokem \u0161olstvu: izzivi in prilo\u017enosti: konferenca IKTVVIS, online, 24. - 25. september 2020. Ljubljana: IKTVVIS. 2020, http://iktvvis.si/SekcijaCC12.html#povzetek50", "\u0160orgo, A., Ploj Virti\u010d, M., Dolenc, K. (2020). Razlike med univerzitetnimi u\u010ditelji in \u0161tudenti v osebni inovativnosti na podro\u010dju informacijskih tehnologij. V: Inovativna uporaba IKT v visokem \u0161olstvu: izzivi in prilo\u017enosti: konferenca IKTVVIS, online, 24. - 25. september 2020. Ljubljana: IKTVVIS. 2020, http://iktvvis.si/SekcijaC21.html#povzetek10"]}
DOI: 10.5281/zenodo.5797765
title: Final project report:  The Side Effects of Forced Online Distance Education (FODE)

description: The outbreak of COVID-19 forced most universities into distance education. Three didacticians and researchers from the University of Maribor, Slovenia: Kosta Dolenc, Mateja Ploj Virtič and Andrej Šorgo formed a self-initiated initiative project group during the COVID-19 epidemic and started the project with the working title: The Side Effects of Forced Online Distance Education (FODE). The aim of the project, was to investigate the response of university teachers and students to the new situation.
description: This work was supported by the Slovenian Research Agency under the core projects: "Information systems", grant no. P2-0057 (Šorgo Andrej) and "Computationally intensive complex systems", grant no. P1-0403 (Ploj Virtič Mateja). The authors declared that there were no conflicts of interest and that the opinions expressed were those of the authors.
DOI: 10.5281/zenodo.5797766
title: Final project report:  The Side Effects of Forced Online Distance Education (FODE)

description: The outbreak of COVID-19 forced most universities into distance education. Three didacticians and researchers from the University of Maribor, Slovenia: Kosta Dolenc, Mateja Ploj Virtič and Andrej Šorgo formed a self-initiated initiative project group during the COVID-19 epidemic and started the project with the working title: The Side Effects of Forced Online Distance Education (FODE). The aim of the project, was to investigate the response of university teachers and students to the new situation.
description: This work was supported by the Slovenian Research Agency under the core projects: "Information systems", grant no. P2-0057 (Šorgo Andrej) and "Computationally intensive complex systems", grant no. P1-0403 (Ploj Virtič Mateja). The authors declared that there were no conflicts of interest and that the opinions expressed were those of the authors.
DOI: 10.6084/m9.figshare.25262824.v1
title: Thesis Appendix.zip

description: Supplementary material to Fynn Schröders Master thesis
DOI: 10.5281/zenodo.10692150
title: HiveTracks WorldFAIR Test Data
DOI: 10.5281/zenodo.10692151
title: HiveTracks WorldFAIR Test Data
DOI: 10.6084/m9.figshare.25260346.v2
title: Test

description: Only used for test.
DOI: 10.6084/m9.figshare.25262824
title: Thesis Appendix.zip

description: Supplementary material to Fynn Schröders Master thesis
DOI: 10.57745/8xnd8z
title: Hilairet-etal-2024-InSituPhaseStressesFromXRD.tab

description: :unav
DOI: 10.57745/57cxtx
title: Hilairet-etal-2024-samplesStrains.tab

description: Strains of two-phase and reference aggregates
DOI: 10.57745/7ik7zy
title: READ-ME.doc

description: information for the dataset
DOI: 10.5281/zenodo.8407658
title: Artifact description: CloverLeaf on Intel Multi-Core CPUs: A Case Study in Write-Allocate Evasion

description: In this paper we analyze the MPI-only version of the CloverLeaf code from the SPEChpc 2021 benchmark suite on recent Intel Xeon “Ice Lake” and “Sapphire Rapids” server CPUs. We observe peculiar breakdowns in performance when the number of processes is prime. Investigating this effect, we create first-principles data traffic models for each of the stencil-like hotspot loops. With application measurements and microbenchmarks to study memory data traffic behavior, we can connect the breakdowns to SpecI2M, a new write-allocate evasion feature in current Intel CPUs. We identify conditions under which SpecI2M works as intended and where it fails to avoid write-allocate transfers. Write-allocate evasion works best if large arrays are written consecutively; in the CloverLeaf code, non-temporal stores can be employed on top for best results. For serial and full-node cases we are able to predict the memory data volume analytically with an error of a few percent. We find that if the number of processes is prime, SpecI2M fails to work properly, which we can attribute to short inner loops emerging from the one-dimensional domain decomposition in this case. We can also rule out other possible causes of the prime number effect, such as breaking layer conditions, MPI communication overhead, and load imbalance.
DOI: 10.5281/zenodo.10692065
title: Artifact description: CloverLeaf on Intel Multi-Core CPUs: A Case Study in Write-Allocate Evasion

description: In this paper we analyze the MPI-only version of the CloverLeaf code from the SPEChpc 2021 benchmark suite on recent Intel Xeon "Ice Lake" and "Sapphire Rapids" server CPUs. We observe peculiar breakdowns in performance when the number of processes is prime. Investigating this effect, we create first-principles data traffic models for each of the stencil-like hotspot loops. With application measurements and microbenchmarks to study memory data traffic behavior, we can connect the breakdowns to SpecI2M, a new write-allocate evasion feature in current Intel CPUs. For serial and full-node cases we are able to predict the memory data volume analytically with an error of a few percent. We find that if the number of processes is prime, SpecI2M fails to work properly, which we can attribute to short inner loops emerging from the one-dimensional domain decomposition in this case. We can also rule out other possible causes of the prime number effect, such as breaking layer conditions, MPI communication overhead, and load imbalance.
DOI: 10.5281/zenodo.8407657
title: Artifact description: CloverLeaf on Intel Multi-Core CPUs: A Case Study in Write-Allocate Evasion

description: In this paper we analyze the MPI-only version of the CloverLeaf code from the SPEChpc 2021 benchmark suite on recent Intel Xeon "Ice Lake" and "Sapphire Rapids" server CPUs. We observe peculiar breakdowns in performance when the number of processes is prime. Investigating this effect, we create first-principles data traffic models for each of the stencil-like hotspot loops. With application measurements and microbenchmarks to study memory data traffic behavior, we can connect the breakdowns to SpecI2M, a new write-allocate evasion feature in current Intel CPUs. For serial and full-node cases we are able to predict the memory data volume analytically with an error of a few percent. We find that if the number of processes is prime, SpecI2M fails to work properly, which we can attribute to short inner loops emerging from the one-dimensional domain decomposition in this case. We can also rule out other possible causes of the prime number effect, such as breaking layer conditions, MPI communication overhead, and load imbalance.
DOI: 10.6084/m9.figshare.24559096
title: Data base-Authorized and unauthorized consumption of SVOD content.sav

description: These files contain all variables and cases analyzed in the study entitled, “Authorized and unauthorized consumption of SVOD content: Modeling determinants of demand and measuring effects of enforcing access control." <br>
DOI: 10.6084/m9.figshare.24559096.v2
title: Data base-Authorized and unauthorized consumption of SVOD content.sav

description: These files contain all variables and cases analyzed in the study entitled, “Authorized and unauthorized consumption of SVOD content: Modeling determinants of demand and measuring effects of enforcing access control." <br>
DOI: 10.5281/zenodo.10692254
title: Dehradun Slum Locations with Population as per City Development Plan 2007

description: This dataset is geofiles for Dehradun Slum Locations with Population as per City Development Plan 2007 was created in 2015-16, for Master's thesis. The author claim no responsibility for the accuracy of the data and the user is required to do cross-verification and ground truthing for their own purposes acknowledging the contributors. This distribution is CC by 4.0. For more discussions and insights on the data please refer the link : Social Inclusion of Marginal in the Great Climate Change Debate: Case of Slums in Dehradun, India - Riyan Habeeb, Sana Javaid, 2019 (sagepub.com)
DOI: 10.5281/zenodo.10692255
title: Dehradun Slum Locations with Population as per City Development Plan 2007

description: This dataset is geofiles for Dehradun Slum Locations with Population as per City Development Plan 2007 was created in 2015-16, for Master's thesis. The author claim no responsibility for the accuracy of the data and the user is required to do cross-verification and ground truthing for their own purposes acknowledging the contributors. This distribution is CC by 4.0. For more discussions and insights on the data please refer the link : Social Inclusion of Marginal in the Great Climate Change Debate: Case of Slums in Dehradun, India - Riyan Habeeb, Sana Javaid, 2019 (sagepub.com)
DOI: 10.6084/m9.figshare.20325133
title: Additional file 1 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 1: Table S1. 171 samples of transcriptome data containing EC and normal samples from the TCGA database.
DOI: 10.6084/m9.figshare.20325133.v1
title: Additional file 1 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 1: Table S1. 171 samples of transcriptome data containing EC and normal samples from the TCGA database.
DOI: 10.6084/m9.figshare.20325139
title: Additional file 3 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 3: Table S3. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.6084/m9.figshare.20325139.v1
title: Additional file 3 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 3: Table S3. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.6084/m9.figshare.20325142
title: Additional file 4 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 4: Table S4. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.6084/m9.figshare.20325142.v1
title: Additional file 4 of Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer

description: Additional file 4: Table S4. 171 samples of transcriptome data containing EC and normal samples from the TCGA database..
DOI: 10.15151/esrf-es-1506225240
title: Characterizing the binding of the GCN4 leucine zipper domain to DNA sequences

description: GCN4 is a well-known transcription factor from S. cerevisiae, and its leucine zipper domain comprises a coiled-coil forming region and a DNA-binding basic region. In the framework of the iSenseDNA European project, this model peptide will be used to test the ability of tailor-made supercoiled DNA constructs to sense protein conformation, by virtue of its very clear disorder to order transition happening in its basic region upon DNA binding. We propose to employ SAXS-WAXS (and eventually their time-resolved variant) on ID09 to perform and in-depth characterization of the binding process, in order to validate the working hypothesis of the project and to obtain further insight on the engineering of the DNA constructs.
DOI: 10.5519/qd.gshp23wj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10 records)
DOI: 10.15151/esrf-es-1409487675
title: BAG Barcelona

description: BAG Barcelona joins 9 groups that belong to two different research institutions: the Institute of Molecular Biology of Barcelona from the Spanish Research Council (IBMB-CSIC) and the Institute for Research in Biomedicine from Barcelona (IRB Barcelona). With a long tradition of accessing the ESRF, the main subjects of research from the BAG groups include protein/DNA complexes, components of viruses, molecular machines, molecular mechanisms of proteases and other enzymes, de-novo design of protein scaffolds and development of crystallopgrahic methods. Our scientific outcomes strongly rely on the excellent performance of ESRF beamlines, from which we are able to retrieve high-quality structural data with the exceptional support from their scientific staff .
DOI: 10.6084/m9.figshare.8266958
title: Genome editing to generate nonfoam-forming sake yeast strains

description: Mutations frequently occur during breeding of sake yeasts and result in unexpected phenotypes. Here, genome editing tools were applied to develop an ideal nonfoam-forming sake yeast strain, K7GE01, which had homozygous <i>awa1∆</i>/<i>awa1∆</i> deletion alleles that were responsible for nonfoam formation and few off-target mutations. High-dimensional morphological phenotyping revealed no detectable morphological differences between the genome-edited strain and its parent, while the canonical nonfoam-forming strain, K701, showed obvious morphological changes. Small-scale fermentation tests also showed differences between components of sake produced by K7GE01 and K701. The K7GE01 strain produced sake with significant differences in the concentrations of ethyl acetate, malic acid, lactic acid, and acetic acid, while K701 produced sake with more differences. Our results indicated genuine phenotypes of <i>awa1∆</i>/<i>awa1∆</i> in sake yeast isolates and showed the usefulness of genome editing tools for sake yeast breeding. K7GE01, a nonfoam-forming sake yeast strain, was developed to have <i>awa1Δ/awa1Δ</i> deletion alleles and few unexpected mutations by genome editing tools.
DOI: 10.6084/m9.figshare.8266958.v1
title: Genome editing to generate nonfoam-forming sake yeast strains

description: Mutations frequently occur during breeding of sake yeasts and result in unexpected phenotypes. Here, genome editing tools were applied to develop an ideal nonfoam-forming sake yeast strain, K7GE01, which had homozygous <i>awa1∆</i>/<i>awa1∆</i> deletion alleles that were responsible for nonfoam formation and few off-target mutations. High-dimensional morphological phenotyping revealed no detectable morphological differences between the genome-edited strain and its parent, while the canonical nonfoam-forming strain, K701, showed obvious morphological changes. Small-scale fermentation tests also showed differences between components of sake produced by K7GE01 and K701. The K7GE01 strain produced sake with significant differences in the concentrations of ethyl acetate, malic acid, lactic acid, and acetic acid, while K701 produced sake with more differences. Our results indicated genuine phenotypes of <i>awa1∆</i>/<i>awa1∆</i> in sake yeast isolates and showed the usefulness of genome editing tools for sake yeast breeding. K7GE01, a nonfoam-forming sake yeast strain, was developed to have <i>awa1Δ/awa1Δ</i> deletion alleles and few unexpected mutations by genome editing tools.
DOI: 10.6084/m9.figshare.11937024
title: Additional file 2 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 2. List of the six strains that failed in the extraction of the full length of 16S rRNA gene sequences.
DOI: 10.6084/m9.figshare.11937024.v1
title: Additional file 2 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 2. List of the six strains that failed in the extraction of the full length of 16S rRNA gene sequences.
DOI: 10.6084/m9.figshare.11937033
title: Additional file 3 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 3. Accession no. list of the additional eight 16S rRNA sequences.
DOI: 10.6084/m9.figshare.11937033.v1
title: Additional file 3 of Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status

description: Additional file 3. Accession no. list of the additional eight 16S rRNA sequences.
DOI: 10.5281/zenodo.10001927
title: Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates - Dataset

description: We previously reported a bacterial four-species biofilm model comprising Stenotrophomonas rhizophila (SR), Bacillus licheniformis (BL), Microbacterium lacticum (ML), and Calidifontibacter indicus (CI) that were isolated from the surface of a dairy pasteuriser after cleaning and disinfection. These bacteria produced 3.13-fold more biofilm mass compared to the sum of biofilm masses in monoculture (https://doi.org/10.3389/fmicb.2023.1159434). In a subsequent experiment we confirmed that the observed community synergy resulted from dynamic social interactions among various species pairs, encompassing commensalism, exploitation, and amensalism. M. lacticum appeared to be the keystone species as it increased the growth of all other species that led to the synergy in biofilm mass. Interactions among the other three species (in the absence of M. lacticum) also contributed towards the synergy in biofilm mass. Bacterial cell-free-supernatants were also investigated to assess the nature of the observed synergy. The first four sheets of the Excel file contain raw cell count data for the four species (SR, BL, ML, and CI), recorded every 4 h over a 24 h period on the surface of stainless steel (SS) in the presence of brain-heart-infusion (BHI) medium and skim-milk (SM). Data related to individual bacterial cell counts in various mixed-species biofilms are also presented. These biofilms were developed on SS in BHI for h.  Data related to bacterial biofilm masses in different mixed-species biofilm combinations are also presented, showcasing the effect of replacing one strain with its CFS. Species written in red indicate that their CFS was used, not their viable form.