cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.12751/g-node.z6m3kt
title: Raw data for Selective reduction of Ca2+ entry through the human NMDA receptor - a quantitative study by simultaneous Ca2+ and Na+ imaging

description: Excessive Ca2+ influx through N-methyl-D-aspartate type glutamate receptors (NMDAR) is associated with excitotoxicity and neuronal death. Thus, a reduction of NMDA-mediated Ca2+ entry could represent a valid neuroprotective strategy. We developed a new two-fluorophore approach to efficiently assess the Ca2+ permeability of ligand-gated ion channels, including NMDARs, in different conditions. This technique was able to discriminate differential Ca2+ permeation through different receptor-channels, and through the same channel in different conditions. With this method we confirmed that EU1794-4, a negative allosteric modulator of NMDARs, decreased their Ca2+ permeability. Furthermore, we measured for the first time the fractional Ca2+ current (Pf, i.e. the percentage of the total current carried by Ca2+ ions) of human NMDARs in the presence of EU1794-4, exhibiting a 40 % reduction in comparison of control conditions. EU1794-4 was also able to reduce NMDA-mediated Ca2+ entry in human neurons derived from induced pluripotent stem cells. This last effect was stronger in the absence of extracellular Mg2+, but still significant in its presence, supporting the hypothesis to use NMDA-selective allosteric modulators to lower Ca2+ influx in human neurons, to prevent Ca2+-dependent excitotoxicity and consequent neurodegeneration. To use data please refer to each figure legend in the associated paper. Data are organized following the figure order (1 figure, 1 directory), with subdirectory including each distinct experimental condition. Data used as control and used in multiple figures are only reported in the directory related to the first figure in which they are displayed. Files including fluorescence microscopy data (concerning all figures) are derived and must be visualized using the Sofware MetaPhluor (Molecular Devices). Files including electrophysiological data (patch-clamp; Fig.5 only) can be visualized by using ClampFit (Molecular Devices). For any further information please contact Prof. Sergio Fucile (sergio.fucile@uniroma1.it)
description: IsSupplementTo: Tiziano DAndrea, Maria Cristina Benedetti, Lucia Monaco, Alessandro Rosa, Sergio Fucile: Selective reduction of Ca2+ entry through the human NMDA receptor: a quantitative study by simultaneous Ca2+ and Na+ imaging. Submitted.
DOI: 10.6084/m9.figshare.23823438
title: Single molecule localization lists for ‘Deep Learning Driven Adaptive Optics for Single Molecule Localization Microscopy’

description: <b>DL-AO</b> single molecule localization data lists are distributed as accompanying data files for the manuscript:‘Deep Learning Driven Adaptive Optics for Single Molecule Localization Microscopy’ by Peiyi Zhang, Donghan Ma, Xi Cheng, Andy P. Tsai, Yu Tang, Hao-Cheng Gao, Li Fang, Cheng Bi, Gary E. Landreth, Alexander A. Chubykin and Fang Huang.Each list contains x, y, z, intensity, background and CRLB based precision estimations. The name of each list indicates its corresponding figure/subfigure.We note that microsoft excel format can only contain up to 1,048,576 rows and thus for high density data containing more than such number of localizations, please contact the corresponding author to retrieve matlab files containing the full list.
DOI: 10.34820/fk2/nxfqp1/7kt0mj
title: Prosidng kolokium FKP 2021 3.pdf

description: :unav
DOI: 10.34820/fk2/nxfqp1
title: Halal Supply Chain in Nusantara Fishery Port

description: This study was conducted at the Nusantara Fisheries Port (PPN). This study focuses on halal supply chain activities for fishers at the Nusantara Fishery Port by looking at fraud in fishing activities. Furthermore, this study will identify the activities of fishers and the Nusantara Fisheries Port from the halal supply chain aspect by using a qualitative approach by using source triangulation to answer the problems that arise. This study contributes further to the significant areas of the halal supply chain for fishers and fishing ports, such as preparation for the departure of fishers, the process of unloading fish at the pier, determining fish prices, and product delivery to factories. The study results show that many fraudulent supply chain activities in fishers cause the product to become subhat/unclear. The aspects that give rise to fraud are the administration process from departure to docking, which is considered a normal fishers' habit. In addition, in determining the price of fish at the port, fraud often occurs between fishers and buyers; some agents/suppliers play the price without a basis to measure it.
DOI: 10.6084/m9.figshare.24220702
title: Data from simulation 2

description: Results of the second simulation from the paper: Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.6084/m9.figshare.24220702.v1
title: Data from simulation 2

description: Results of the second simulation from the paper: Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.6084/m9.figshare.24220777
title: 484 MAGs recovered from intertidal sediments using metagenomics sequencing method

description: 484 MAGs recovered from intertidal sediments using metagenomics sequencing method.
DOI: 10.5281/zenodo.8392689
title: Lumped parameter liver simulation to predict acute hemodynamic alterations following partial resections (simulation data)

description: This repository contains MATLAB .mat files containing simulation data reported in the manuscript "Lumped parameter liver simulation to predict acute hemodynamic alterations following partial resections" by Jeffrey Tithof, Timothy L. Pruett, and Joseph Sushil Rao (University of Minnesota). See the README file for details of which data set corresponds to which figure.
DOI: 10.5281/zenodo.8392688
title: Lumped parameter liver simulation to predict acute hemodynamic alterations following partial resections (simulation data)

description: This repository contains MATLAB .mat files containing simulation data reported in the manuscript "Lumped parameter liver simulation to predict acute hemodynamic alterations following partial resections" by Jeffrey Tithof, Timothy L. Pruett, and Joseph Sushil Rao (University of Minnesota). See the README file for details of which data set corresponds to which figure.
DOI: 10.48329/6j2c-nh78
title: CPRD Aurum September 2023

description: The CPRD Aurum database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using EMIS Web® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.6084/m9.figshare.24220936
title: Empirical example results

description: Empirical examples from the paper: Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.6084/m9.figshare.24220936.v1
title: Empirical example results

description: Empirical examples from the paper: Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.6084/m9.figshare.24220747
title: The Separation of Attentional Blink Effect between Facial Identity and Facial Expression Recognition

description: Raw data of the experiments
DOI: 10.6084/m9.figshare.24220747.v2
title: The Separation of Attentional Blink Effect between Facial Identity and Facial Expression Recognition

description: Raw data of the experiments
DOI: 10.6084/m9.figshare.24220747.v1
title: The Separation of Attentional Blink Effect between Facial Identity and Facial Expression Recognition

description: Raw data of the experiments
DOI: 10.6084/m9.figshare.24220939
title: Large System Simulation (Appendix)

description: Large system simulation example from the appendix of the paper Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.6084/m9.figshare.24220939.v1
title: Large System Simulation (Appendix)

description: Large system simulation example from the appendix of the paper Bence Gergely, Matthieu Brinkhuis, Szabolcs Takács, Maria Bolsinova: The Effect of hyper-parameters and system features on the speed of convergence of ability estimation in Urnings based Adaptive Practising Systems.
DOI: 10.5281/zenodo.8198809
title: Brazilian Zooarch Database (ZooarchBR): database of the archaeological fauna of Brazil

description: The Brazilian Zooarch Database (ZooarchBR) is the first collaborative and open access zooarchaeological database in Brazil, where the user can not only view the available data, but also contribute by entering new/additional information to expand the faunal data recorded in Brazilian archaeological sites. The data will also be integrated into the <em>Sistema de Informação sobre a Biodiversidade Brasileira (SiBBr)</em> and Global Biodiversity Information Facility (GBIF). <strong>Reference (version 1):</strong> Fossile, T., Ferreira, J, Colonese, A.C. 2023. Brazilian Zooarch Database (ZooarchBR): a database of the archaeological fauna of Brazil, <em>Revista de Arqueologia da</em> <em>Sociedade de Arqueologia Brasileira </em>(ISSN 0102-0420 - Press Version; ISSN 1982-1999 - Online Version)<em>, v. 36 n. 3 (2023): </em>Special issue <em>Zooarqueologia Neotropical</em>, Editors C. Borges; P. Fernandéz; A. S. Muñoz; R. C. C. L. Souza, Neotropical Zooarchaeology Working Group of International Council for Archaeozoology (NZWG-ICAZ). DOI https://doi.org/10.24885/sab.v36i3.1088. <strong>(Português)</strong> O Brazilian Zooarch Database (ZooarchBR) é o primeiro banco de dados zooarqueológico colaborativo e de acesso aberto do Brasil onde o usuário pode visualizar os dados disponíveis e contribuir na inserção de novos dados para expansão da fauna registrada em sítios arqueológicos no país. Os dados também serão integrados ao Sistema de Informação sobre a Biodiversidade Brasileira (SiBBr) e ao Global Biodiversity Information Facility (GBIF). <strong>Referência (versão 1): </strong>Fossile, T., Ferreira, J., Colonese, A.C. 2023. Brazilian Zooarch Database (ZooarchBR): banco de dados da fauna arqueológica do Brasil, Revista de Arqueologia da Sociedade de Arqueologia Brasileira (ISSN 0102-0420 - Versão Impressa; ISSN 1982-1999 - Versão Online),<em> v. 36 n. 3 (2023): </em>Dossiê Zooarqueologia Neotropical, Editores C. Borges; P. Fernandéz; A. S. Muñoz; R. C. C. L. Souza, <em>Neotropical Zooarchaeology Working Group of International Council for Archaeozoology (NZWG-ICAZ)</em>. DOI https://doi.org/10.24885/sab.v36i3.1088.
description: This work was funded by the ERC Consolidator project TRADITION, which has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 817911. This work contributes to the "ICTA-UAB María de Maeztu" Programme for Units of Excellence of the Spanish Ministry of Science and Innovation (CEX2019-000940-M). This work was also funded by EarlyFoods (Evolution and impact of early food production systems), 2021 SGR 00527.
DOI: 10.5281/zenodo.8198808
title: Brazilian Zooarch Database (ZooarchBR): database of the archaeological fauna of Brazil

description: The Brazilian Zooarch Database (ZooarchBR) is the first collaborative and open access zooarchaeological database in Brazil, where the user can not only view the available data, but also contribute by entering new/additional information to expand the faunal data recorded in Brazilian archaeological sites. The data will also be integrated into the <em>Sistema de Informação sobre a Biodiversidade Brasileira (SiBBr)</em> and Global Biodiversity Information Facility (GBIF). <strong>Reference (version 1):</strong> Fossile, T., Ferreira, J, Colonese, A.C. 2023. Brazilian Zooarch Database (ZooarchBR): a database of the archaeological fauna of Brazil, <em>Revista de Arqueologia da</em> <em>Sociedade de Arqueologia Brasileira </em>(ISSN 0102-0420 - Press Version; ISSN 1982-1999 - Online Version)<em>, v. 36 n. 3 (2023): </em>Special issue <em>Zooarqueologia Neotropical</em>, Editors C. Borges; P. Fernandéz; A. S. Muñoz; R. C. C. L. Souza, Neotropical Zooarchaeology Working Group of International Council for Archaeozoology (NZWG-ICAZ). DOI https://doi.org/10.24885/sab.v36i3.1088. <strong>(Português)</strong> O Brazilian Zooarch Database (ZooarchBR) é o primeiro banco de dados zooarqueológico colaborativo e de acesso aberto do Brasil onde o usuário pode visualizar os dados disponíveis e contribuir na inserção de novos dados para expansão da fauna registrada em sítios arqueológicos no país. Os dados também serão integrados ao Sistema de Informação sobre a Biodiversidade Brasileira (SiBBr) e ao Global Biodiversity Information Facility (GBIF). <strong>Referência (versão 1): </strong>Fossile, T., Ferreira, J., Colonese, A.C. 2023. Brazilian Zooarch Database (ZooarchBR): banco de dados da fauna arqueológica do Brasil, Revista de Arqueologia da Sociedade de Arqueologia Brasileira (ISSN 0102-0420 - Versão Impressa; ISSN 1982-1999 - Versão Online),<em> v. 36 n. 3 (2023): </em>Dossiê Zooarqueologia Neotropical, Editores C. Borges; P. Fernandéz; A. S. Muñoz; R. C. C. L. Souza, <em>Neotropical Zooarchaeology Working Group of International Council for Archaeozoology (NZWG-ICAZ)</em>. DOI https://doi.org/10.24885/sab.v36i3.1088.
description: This work was funded by the ERC Consolidator project TRADITION, which has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 817911. This work contributes to the "ICTA-UAB María de Maeztu" Programme for Units of Excellence of the Spanish Ministry of Science and Innovation (CEX2019-000940-M). This work was also funded by EarlyFoods (Evolution and impact of early food production systems), 2021 SGR 00527.
DOI: 10.5281/zenodo.8385549
title: Corvids optimize working memory by categorizing continuous stimuli

description: This repository contains numerical source data for graphs and charts (in a MATLAB struct) presented in our main manuscript: Corvids optimize working memory by categorizing continuous stimuli (Apostel, Panichello, Buschman, Rose). Contact: aylin.klarer@ruhr-uni-bochum.de, jonas.rose@ruhr-uni-bochum.de
DOI: 10.5281/zenodo.8385548
title: Corvids optimize working memory by categorizing continuous stimuli

description: This repository contains numerical source data for graphs and charts (in a MATLAB struct) presented in our main manuscript: Corvids optimize working memory by categorizing continuous stimuli (Apostel, Panichello, Buschman, Rose). Contact: aylin.klarer@ruhr-uni-bochum.de, jonas.rose@ruhr-uni-bochum.de
DOI: 10.6084/m9.figshare.24220819
title: Data Availability - Want et al 2023 JMSE

description: This data set contains raw figures used in the results presented in Want et al. 2023 "Key biofouling organisms in tidal habitats targeted by the offshore renewable energy sector in the North Atlantic include the massive barnacle <i>Chirona hameri</i>" submitted to the JMSE
DOI: 10.6084/m9.figshare.24220819.v1
title: Data Availability - Want et al 2023 JMSE

description: This data set contains raw figures used in the results presented in Want et al. 2023 "Key biofouling organisms in tidal habitats targeted by the offshore renewable energy sector in the North Atlantic include the massive barnacle <i>Chirona hameri</i>" submitted to the JMSE
DOI: 10.25452/figshare.plus.24160968
title: scPerturb Single-Cell Perturbation Data: ATAC files

description: This repository contains the scATAC-seq datasets from the scperturb database. For each dataset this includes the following feature matrices:ChromVarLSI_embeddinggene_scoresmarkerpeak_targetpeak_bcIn order to facilitate development and benchmarking of computational methods in systems biology, we collected a set of 44 publicly available single-cell perturbation-response datasets with molecular readouts, including transcriptomics, proteomics and epigenomics. We applied uniform quality control pipelines and harmonize feature annotations. The resulting information resource enables efficient development and testing of computational analysis methods, and facilitates direct comparison and integration across datasets. In addition, we describe E-statistics for perturbation effect quantification and significance testing, and demonstrate E-distance as a general distance measure for single-cell data as both a python (scperturb on PyPI) and R (scperturbR on CRAN) package.See the associated publication for info on how the data was handled. We also have an interactive table (Data Explorer) on our website with metadata per dataset.
DOI: 10.5281/zenodo.8383371
title: ABS-rich model waste characterization for different sampling strategies – ATR FTIR data

description: The purpose of this analysis is the development of an efficient sampling protocol for plastic waste streams. A model waste from different polymers was formulated, rich in ABS and containing PS, PP and PE in smaller proportions. Additionally, one bromine containing flame retardant is added to a final concentration of either 500ppm or 50ppm. Different sampling approaches were followed including extrusion and/or cryogenic grinding as a homogenization step. Each approach was assessed via various analytical techniques as to homogenization efficiency. This dataset contains raw ATR-FTIR data of the model waste from the different sampling approaches. The content is: One Excel file containing ATR-FTIR data of the model waste, wherein the approach was based on extrusion and measurement protocol One Excel file containing ATR-FTIR data of the model waste, wherein the approach was based on cryogenic grinding and measurement protocol One Readme file containing further information about the methodology and nomenclature This dataset was generated in the framework of PRecycling Horizon Europe project (101058670)
DOI: 10.5281/zenodo.8387361
title: ABS-rich model waste characterisation for different sampling strategies – DSC data

description: The purpose of this analysis is the development of an efficient sampling protocol for plastic waste streams. A model waste from different polymers was formulated, rich in ABS and containing PS, PP and PE in smaller proportions. Additionally, one bromine containing flame retardant is added to a final concentration of either 500ppm or 50ppm. Different sampling approaches were followed including extrusion and/or cryogenic grinding as a homogenization step. Each approach was assessed via various analytical techniques as to homogenization efficiency. This dataset contains raw DSC data of the model waste from the different sampling approaches. The content is: ·One Excel file containing DSC data of the model waste, wherein the approach was based on extrusion and measurement protocol ·One Excel file containing DSC data of the model waste, wherein the approach was based on cryogenic grinding and measurement protocol ·One Word file containing further information about the methodology and nomenclature This dataset was generated in the framework of PRecycling Horizon European project (101058670)
DOI: 10.5281/zenodo.8387443
title: ABS-rich model waste characterisation for different sampling strategies – TGA data

description: The purpose of this analysis is the development of an efficient sampling protocol for plastic waste streams. A model waste from different polymers was formulated, rich in ABS and containing PS, PP and PE in smaller proportions. Additionally, one bromine containing flame retardant is added to a final concentration of either 500ppm or 50ppm. Different sampling approaches were followed including extrusion and/or cryogenic grinding as a homogenization step. Each approach was assessed via various analytical techniques as to homogenization efficiency. This dataset contains raw TGA data of the model waste from the different sampling approaches. The content is: ·One Excel file containing TGA data of the model waste, wherein the approach was based on extrusion and measurement protocol ·One Excel file containing TGA data of the model waste, wherein the approach was based on cryogenic grinding and measurement protocol ·One Word file containing further information about the methodology and nomenclature This dataset was generated in the framework of PRecycling Horizon Europe project (101058670)
DOI: 10.5281/zenodo.8387457
title: ABS-rich model waste characterisation for different sampling strategies – MFR data

description: The purpose of this analysis is the development of an efficient sampling protocol for plastic waste streams. A model waste from different polymers was formulated, rich in ABS and containing PS, PP and PE in smaller proportions. Additionally, one bromine containing flame retardant is added to a final concentration of either 500ppm or 50ppm. Different sampling approaches were followed including extrusion and/or cryogenic grinding as a homogenization step. Each approach was assessed via various analytical techniques as to homogenization efficiency. This dataset contains raw MFR data of the model waste from the different sampling approaches. The content is: ·One Excel file containing MFR data of the model waste, wherein the approach was based on extrusion and measurement protocol ·One Excel file containing MFR data of the model waste, wherein the approach was based on cryogenic grinding and measurement protocol ·One Word file containing further information about the methodology and nomenclature This dataset was generated in the framework of PRecycling Horizon Europe project (101058670)
DOI: 10.25452/figshare.plus.24160713
title: scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files

description: This repository contains the single-cell RNA and protein datasets as h5ad files scRNA-seq and protein datasets within the scperturb database as h5ad files (saved with scanpy v1.9.1.) from the scperturb database.<br>In order to facilitate development and benchmarking of computational methods in systems biology, we collected a set of 44 publicly available single-cell perturbation-response datasets with molecular readouts, including transcriptomics, proteomics and epigenomics. We applied uniform quality control pipelines and harmonize feature annotations. The resulting information resource enables efficient development and testing of computational analysis methods, and facilitates direct comparison and integration across datasets. In addition, we describe E-statistics for perturbation effect quantification and significance testing, and demonstrate E-distance as a general distance measure for single-cell data as both a python (scperturb on PyPI) and R (scperturbR on CRAN) package.<br>See the associated publication for info on how the data was handled. We also have an interactive table (Data Explorer) on our website with metadata per dataset.