cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/13782
title: [Dataset] Numerical models for simulating supercritical CO2 intrusion into shaly caprock specimens

description: This dataset is composed of the input files of numerical models for simulating laboratory-scale CO2 intrusion into shaly caprock specimens. Six numerical models are included in six distinct folders whose names represent a short description of the corresponding model. The names of the folders and the model descriptions are as follows: - “RS_Referencecase.gid”: simulation of CO2 intrusion into the Remolded Shale with a reference set of parameters including sample length l=1 cm, molecular diffusion coefficient D=1·10-9 m2/s and capillary entry pressure of porous disks p0=0.01 MPa - “OPA_Referencecase.gid”: simulation of CO2 intrusion into Oplinus Clay with the same set of reference parameters mentioned above - “RS_l=10cm.gid”: simulation of CO2 intrusion into a 10-cm-long RS specimen - “RS_D=1e-10m2s-1.gid”: simulation of CO2 intrusion into the RS specimen by considering a lower diffusion coefficient D=1·10-10 m2/s - “RS_p0=0.1MPa.gid” and “RS_p0=0.2MPa.gid”: simulations of CO2 intrusion into the RS specimen with increased p0=0.1 MPa and p0= 0.2 MPa, respectively. In each folder, there is a file with the name of the folder ended as “_gen.dat” which contains the input data of the model, including material properties, initial and boundary conditions and the time intervals. There is also a file ended as “_gri.dat” that includes the information on the mesh. The file “root.dat” includes the name of the model. To run the simulation, just execute the Code_Bright executable “Cb_v9_3.exe” in a folder that contains the three input files and the executable.
DOI: 10.20350/digitalcsic/13766
title: Recombination rates according to Fiston-Lavier et al. 2010 and Comeron et al. 2012 for D. melanogaster genome release 6

description: This file contains genomic coordinates and its recombination rate as determined by the recombination rate calculator (RRC) (Fiston-Lavier et al. 2010) and (Comeron et al. 2012) (http://petrov.stanford.edu/cgi-bin/recombination-rates_updateR5.pl). Such coordinates were originally calculated based on release 5 of D. melanogaster genome so we converted them to release 6 coordinates using the coord_converter.pl script from FlyBase (Gramates et al. 2017). We considered a region to have high recombination rates (HRR) when both recombination estimates were greater than 0.
description: This file contains recombination rates values according to two estimations: Fiston-Lavier et al. 2010 and Comeron et al. 2012 for D. melanogaster genome release 6.
DOI: 10.20350/digitalcsic/13765
title: Fasta sequences for the Drosophila melanogaster Manually Curated Transposable Elements (MCTE) library

description: The compressed file contains two files: MCTE.fasta with the consensus TE sequences in fasta format and the MCTE_info.xlsx Excel file with information for every sequence in the MCTE.fasta file. We used the REPET package (v.2.5) (Flutre et al. 2011; Hoede et al. 2014; Quesneville et al. 2005) for performing TE annotations using a manually curated TE (MCTE) library of consensus sequences. Briefly, REPET is composed of two main pipelines, TEdenovo dedicated to de novo detection of TE families and TEannot for the annotation and analysis of TEs in genomic sequences. For the creation of the MCTE library, we first run the REPET (v.2.5) (Flutre et al. 2011; Hoede et al. 2014; Quesneville et al. 2005) TEdenovo pipeline with default parameters on 13 genomes Drosophila melanogaster natural strains. The manual curation of the identified consensuses involved three main procedures: removal of redundant sequences, the manual identification of potentially artifactual sequences and the classification of consensuses into families. Redundant sequences (consensus sequences present in more than one genome) were identified by first running the PASTEClassifier module from PASTEC with default options (Hoede et al. 2014). We also performed similarity clustering, multiple sequence alignments (MSA) of the clusters and generated consensus sequences for each MSA in order to obtain a consensus sequence representative of all the genomes. We manually explored the consensus sequences and their copies using the plotCoverage tool from REPET and discarded consensuses showing mainly a high number of small copies. The assignation of the consensus sequences into families was performed using BLAT (Kent 2002) against the curated canonical sequences of Drosophila TEs from the Berkeley Drosophila Genome Project (BDGP) v.9.4.1 (https://fruitfly.org/p_disrupt/TE.html). When no matches were found, we used RepeatMasker (v.4) (Smit 2015) with the release RepBaseRepeatMaskerEdition-20181026 of the RepBase (Bao et al. 2015).
description: Manually Curated Transposable Elements (MCTE) library from Drosophila melanogaster. De novo reconstruction was performed using TEdenovo pipeline from REPET package (v.2.5) (Flutre et al. 2011; Hoede et al. 2014; Quesneville et al. 2005). De-novo genome assemblies were sequenced using long-read sequencing technologies (Oxford Nanopore Technologies or Pacific Bioscience).
DOI: 10.20350/digitalcsic/13761
title: Índices agroclimáticos de España

description: Los 18 indicadores agroclimáticos están calculados sobre una malla de 5x5 km para el periodo 1981-2010 cubriendo todo el territorio de la España peninsular. Se ofrecen los datos a resolución anual excepto para los valores de probabilidad, que tienen un único valor para todo el periodo.
description: Base de datos de indicadores agroclimáticos para la España peninsular
DOI: 10.20350/digitalcsic/13757
title: Aphid-borne viruses infecting cultivated watermelon and squash in Spain: characterization of a variant of cucurbit aphid-borne yellow virus (CABYV)

description: Aphid-borne viruses are responsible for major plant diseases, and hamper the sustainability of crop production. Cucurbit plants can often be infected with multiple aphid-borne viruses, and systematic monitoring can reveal the occurrence these viruses, in addition to unadvertised viruses in crops that may facilitate the control of diseases. For three consecutive (2018-2020) seasons, the presence of aphid-borne viruses was monitored from a total of 292 samples of watermelon and squash plants that showed yellowing symptoms. The samples were collected from three major cucurbit-producing areas (Castilla La-Mancha, Alicante and Murcia) in Spain. We found that cucurbit aphid-borne yellow virus (CABYV) was the most common virus found (29%) in the plants from both crops. Likewise, except for squash samples from Castilla La-Mancha and Alicante, watermelon mosaic virus (WMV) was also found (23%) with a relatively high frequency in watermelon plants, while the occurrences of PRSV and ZYMV were low (&lt;3%), and even CMV was undetected in both plant species. Furthermore, during field inspections, we observed the exacerbation of bright yellowing symptoms in watermelon plants that was often accompanied by a considerable fruit abortion. CABYV was the only causative agent for this new yellowing disease in watermelons, and two infectious cDNA clones (one from watermelon; CABYV-LP63 and another from melon; CABYV-MEC12.1) were constructed to further comparison and characterize this CABYV disease. Based on the full-length genome, both isolates were grouped phylogenetically together within the Mediterranean clade. However, the Koch´s postulates tests were only successfully completed for the CABYV-LP63 isolate, which also showed several amino acid changes, in addition to two potential recombination events as compared to MEC12.1. Remarkably, the LP63 isolate caused more severe symptoms and showed higher RNA accumulation than MEC12.1 in five cucurbits plant species. These results suggest that a novel CABYV variant that causes severe yellowing symptoms, may be causing outbreaks in cucurbit crops.
DOI: 10.15468/dl.355mmw
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Terfezia arenaria (Moris) Trappe",
 "Year 1901-2024"
 ]
}

 The dataset includes 77 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004098-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw2pw2
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heterixalus boettgeri (Mocquard, 1902)"
 ]
}

 The dataset includes 314 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004097-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/13750
title: Medium spiny neurons activity reveals the discrete segregation of mouse dorsal striatum [Dataset]

description: This public repository contains the data of the the manuscript titled “Medium spiny neurons activity reveals the discrete segregation of mouse dorsal striatum” published in eLife. All data has been generated in Ramón Reig laboratory at the Instituto de Neurociencias CSIC-UMH.
description: Conditions for use the data: If you publish any work using the data, please cite the following paper: “Medium spiny neurons activity reveals the discrete segregation of mouse dorsal striatum”.
description: The dataset consists on whole-cell patch-clamp recordings of striatal medium spiny neurons (MSNs) and cortical L5 neurons. MSNs are usually recorded simultaneously with single or double LFP in different cortical regions. The experiments were performed under ketamine/medetomidine anaesthesia. When visual stimulation was performed, a white LED was used. In addition, matlab scripts and the necessary data to reproduce the main results in the publication listed below are provided. A complete description of the surgical procedures, recordings and data analysis can be found in: “Medium spiny neurons activity reveals the discrete segregation of mouse dorsal striatum”
description: Data folder contains to sub-folders, containing the spontaneous and the evoked activity used in this paper: 1.The folder “Spontaneous activity recordings” contains the following files: - DCS/DLS/DMS_recordings are each one matrix of neurons x time, on which each row is one MSN recorded in that area. - Pair of MSNS consists in a matlab cell with pairs of MSNs recorded simultaneously. Upper row is the DLS-MSN, bottom row is the DMS-MSN. - DMS/DLS_with_LFPs consists in a cell with the simultaneous recordings. Each cell has a different number of rows depending on the number of LFPs. MSN is the end row - LFPs information contain the info required to know which LFPs were recorded with each MSN in the DMS/DLS_with_LFPs files.-- 2. The folder “Visual stimulation PSTHs” contains the following files: - PSTHs_DCS contains the peristimulus histograms of the DCS-MSNs in response to visual stimulations. - PSTHs_DMS contains the peristimulus histograms of the DMS-MSNs in response to visual stimulations.
DOI: 10.20350/digitalcsic/13739
title: Supplemental material AJP-HCP IFN are pro-inflammatory cytokines in sheared side-specific human VEC
title: Supplemental material AJP-HCP Parra-Izquierdo et al

description: Supplemental material that contains; - method for the characterization of valvular endothelial cells by immunostaining. - Supplemental Figure S1. Characterization of aortic valve endothelial cells. - Supplemental Figure S2. Cell counting corresponding to Fig 7 of the manuscript. - Supplemental Table S1. Clinical features of patients used in the study of mixed VEC population. - Supplemental Table S2. Clinical characteristics of patients used in the study of aortic- and ventricular-sided endothelial cells.
DOI: 10.20350/digitalcsic/13713
title: Lifetime genealogical divergence within plants leads to epigenetic mosaicism in the shrub Lavandula latifolia (Lamiaceae)

description: The dataset consists of two comma-delimited plain text files for global methylation and MS-AFLP data, respectively. In each file, each row refers to an individual module. For MS-AFLP columns refers to a specific (although anonymous) marker, identified by primer combination and size (base pairs). Three L. latifolia shrubs were sampled at a large population growing near Arroyo Aguaderillos in the Sierra de Cazorla (Jaén province, southeastern Spain; geographical coordinates 37.96157 N, 2.88389 W). Fresh leaf samples were collected from as many individual modules as possible in each plant. DNA cytosine methylation was determined for each sample by reversed phase HPLC with spectrofluorimetric detection. Global cytosine methylation was estimated as 100 x 5mdC/(5mdC + dC), where 5mdC and dC are the integrated areas under the peaks for 5-methyl-2'-deoxycytidine and 2'-deoxycytidine, respectively. The MS-AFLP analyses were performed using standard protocols involving the use of fluorescent dye-labeled selective primers. Each sample was fingerprinted using eight primer combinations, each with two (HpaII) or three (MseI) selective nucleotides. Fragment separation and detection was made using an ABI PRISM 3130xl DNA sequencer, only fragments ≥ 150 base pairs in size were considered and the presence (1) or absence (0) of fragments in each sample was scored manually by visualizing electropherograms with GeneMapper 3.7 software
description: This dataset includes: (i) global DNA cytosine methylation estimates (= percentage of all genomic cytosines that are methylated), obtained by reverse phase HPLC with spectrofluorimetric detection; and (ii) the scoring (presence/absence) of individual methylation-sensitive AFLP markers (MS-AFLP), for different modules of three adult, wild-grown, field-sampled plants of the shrub Lavandula latifolia.
DOI: 10.20350/digitalcsic/13708
title: VCF file containing SNP callings for 46 Drosophila melanogaster genomes

description: VCF file generated for searching selection signatures on TEs in 46 D. melanogaster genomes (the 32 sequenced in this work + the 14 genomes sequenced by Chakraborty et al. 2019. SNPs were called using the GATK (v4.0) (McKenna et al. 2010) HaplotypeCaller best practices for variant discovery (Van der Auwera et al. 2013) and the haplotype phasing was performed using SHAPEIT4 (Delaneau et al. 2019).
DOI: 10.20350/digitalcsic/13680
title: Arthropod abundance for the endangered little bustard (Tetrax tetrax) in cereal farmland during the chick-rearing period

description: Arthropod abundance collected in pitfalls placed in different habitats in four study areas of Castilla y León with different agricultural intensification.
description: The dataset includes arthropod abundance collected in pitfalls placed in different habitats in four study areas of Castilla y León with different agricultural intensification.
DOI: 10.20350/digitalcsic/13683
title: Research data supporting "Addressing Molecular Optomechanical Effects in Nanocavity-Enhanced Raman Scattering beyond the Single Plasmonic Mode"

description: In this folder, we include the original datasets for the figures in the article "Addressing Molecular Optomechanical Effects in Nanocavity-Enhanced Raman Scattering beyond the Single Plasmonic Mode" by Yuan Zhang, Ruben Esteban, Roberto A. Boto, Mattin Urbieta, Xabier Arrieta, ChongXin Shan, Shuzhou Li, Jeremy J. Baumberg and Javier Aizpurua, published in the journal Nanoscale (DOI: 10.1039/d0nr06649d). We organize the datasets with sub-folders, which are labeled with the figure number in the main article and the electronic supplementary information (ESI). In each sub-folder, the datasets are presented in text files named as "Figure[X].dat" (X for 2,3,...,S1,S2,...). The matlab scripts with name "Figure[X].m" import the text files to produce the figures in the main text and the ESI. In the begining of the scripts, we provide the explanation of the meaning of the columns in the datasets. The matlab files were prepared for version R2018b. Notice that the "Figure[X].m" can be opened with a standard word processor so that it is possible to read the explanation without using the matlab program. The data in "Figure[X].dat" can then be plotted using a different program.
DOI: 10.6084/m9.figshare.27194433
title: Supp 3: Multiple episodes of Late Neoproterozoic rifting in the Tarim Craton during its separation from the Supercontinent Rodinia

description: Supplementary Table S2. Geochemistry.
DOI: 10.6084/m9.figshare.27194433.v1
title: Supp 3: Multiple episodes of Late Neoproterozoic rifting in the Tarim Craton during its separation from the Supercontinent Rodinia

description: Supplementary Table S2. Geochemistry.
DOI: 10.6084/m9.figshare.27194436
title: Supp 2: Multiple episodes of Late Neoproterozoic rifting in the Tarim Craton during its separation from the Supercontinent Rodinia

description: Supplementary Table S1. U—Pb age and trace element.
DOI: 10.6084/m9.figshare.27194436.v1
title: Supp 2: Multiple episodes of Late Neoproterozoic rifting in the Tarim Craton during its separation from the Supercontinent Rodinia

description: Supplementary Table S1. U—Pb age and trace element.
DOI: 10.15468/dl.ky5vf3
title: Occurrence Download

description: A dataset containing 4141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Alnus glutinosa (L.) Gaertn.",
 "Year 1901-2024"
 ]
}

 The dataset includes 4141 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004100-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13907660
title: QCA-2024-SCC-RC66499 R&D data

description: Project Code: QCA-2024-SCC-RC66499.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.5281/zenodo.13907661
title: QCA-2024-SCC-RC66499 R&D data

description: Project Code: QCA-2024-SCC-RC66499.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.15468/dl.t3c4qp
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heterixalus carbonei Vences, Glaw, Jesu & Schimmenti, 2000"
 ]
}

 The dataset includes 49 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004104-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27194217
title: The Impact of Village Heads' Educational Levels on Adolescent Academic Performance: Evidence from Rural China

description: This study investigates the relationship between the educational level of village heads and the academic performance of adolescents, using data from the China Family Panel Studies (CFPS). The analysis reveals that village chiefs with well education levels significantly enhance the academic outcomes of adolescents within their communities. This positive effect remains robust even after controlling for endogeneity through instrumental variables and conducting various robustness checks. Further investigation shows that these well-educated village leaders contribute to an increased provision of public goods, thereby improving the village's external environment, which in turn supports academic performance. Additionally, well-educated village chiefs serve as role models within the community's social network, positively influencing parental educational aspirations and enhancing adolescents' academic results. Notably, the impact of well-educated village chiefs is more pronounced among girls and adolescents from low-income families, underscoring its significance in promoting gender equity in education and breaking cycles of intergenerational poverty.
DOI: 10.6084/m9.figshare.27194217.v3
title: The Impact of Village Heads' Educational Levels on Adolescent Academic Performance: Evidence from Rural China

description: This study investigates the relationship between the educational level of village heads and the academic performance of adolescents, using data from the China Family Panel Studies (CFPS). The analysis reveals that village chiefs with well education levels significantly enhance the academic outcomes of adolescents within their communities. This positive effect remains robust even after controlling for endogeneity through instrumental variables and conducting various robustness checks. Further investigation shows that these well-educated village leaders contribute to an increased provision of public goods, thereby improving the village's external environment, which in turn supports academic performance. Additionally, well-educated village chiefs serve as role models within the community's social network, positively influencing parental educational aspirations and enhancing adolescents' academic results. Notably, the impact of well-educated village chiefs is more pronounced among girls and adolescents from low-income families, underscoring its significance in promoting gender equity in education and breaking cycles of intergenerational poverty.
DOI: 10.6084/m9.figshare.27194217.v2
title: The Impact of Village Heads' Educational Levels on Adolescent Academic Performance: Evidence from Rural China

description: This study investigates the relationship between the educational level of village heads and the academic performance of adolescents, using data from the China Family Panel Studies (CFPS). The analysis reveals that village chiefs with well education levels significantly enhance the academic outcomes of adolescents within their communities. This positive effect remains robust even after controlling for endogeneity through instrumental variables and conducting various robustness checks. Further investigation shows that these well-educated village leaders contribute to an increased provision of public goods, thereby improving the village's external environment, which in turn supports academic performance. Additionally, well-educated village chiefs serve as role models within the community's social network, positively influencing parental educational aspirations and enhancing adolescents' academic results. Notably, the impact of well-educated village chiefs is more pronounced among girls and adolescents from low-income families, underscoring its significance in promoting gender equity in education and breaking cycles of intergenerational poverty.
DOI: 10.5281/zenodo.13842007
title: ESEILA Géoazur Laboratory Data
DOI: 10.5281/zenodo.13843198
title: ESEILA Géoazur Laboratory Data
DOI: 10.5281/zenodo.13839149
title: ESEILA Géoazur Laboratory Data
DOI: 10.5281/zenodo.13839150
title: ESEILA Géoazur Laboratory Data
DOI: 10.15468/dl.mefnr7
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bhutan",
 "OccurrenceStatus is Present",
 "TaxonKey is Houttuynia cordata Thunb."
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004107-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.