cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25472467.v2
title: EPI-Clone dataset M.4: Mature myeloid experiment

description: This is the dataset supporting the EPI-Clone manuscript: Targeted single cell methylation profiling of hematopoietic stem and progenitor cells (HSPCs) and mature myeloid cells from blood, bone marrow, and lung was performed with the scTAMseq method. Two experiments are included: Mature myeloid cells from lung tissue and HSPCs and mature myeloid cells from blood and bone marrow. Dataset is a seurat (v4) object with the following assays, reductions and metadata:  <br><b>ASSAYS</b>: AB: Antibody expression data DNAm: DNA methylation data, containing binary observations (0: amplicon not observed, i.e. dropout or absence of DNA methylation, 1: amplicon observed, i.e. DNA methylation). See the paper on scTAMseq <b>DIMENSIONALITY REDUCTION</b><b> </b>pca: PCA performed on the DNAm data umap: UMAP computed on the DNAm data <b>METADATA</b> Sample: The experiment that the cell is from, values are "Lung" for cells obtained from lung and “MyeLym” for HSPCs/mature myeloid cells from bone marrow and blood CellType: Cell type annotation LARRY: Error corrected LARRY barcode Pseudotime: Differentiation pseudotime PerformanceNonHhaI: Performance of the control amplicons in that cell TotalCounts: Number of reads on the Non-HhaI control amplicons
DOI: 10.6084/m9.figshare.4892600.v1
title: e-BioSign-DS1-Signature DB

description: <b>DESCRIPTION OF e-BioSign-DS1-Signature DB</b>The dataset comprises <b>on-line signatures </b>acquired from 5 different COTS devices in total, three Wacom devices (STU-500, STU-530 and DTU-1031) specifically designed to capture dynamic signatures and handwritng, and two Samsung general purpose tablets (Samsung Galaxy Note 10.1 and Samsung ATIV 7). For the two Samsung tablets, data is collected using both pen stylus and also the finger. Data was collected in two sessions for 65 subjects. Skilled forgeries were also performed. In Fig. 1 the description of the devices and the acquisition setup per device and user considered in the e-BioSign database are depicted. We report in [PONE2017] a benchmark performance based on e-BioSign for person verification under three different real scenarios: 1) intra-device scenario, 2) inter-device scenario, and 3) mixed writing-tool scenario. We have also experimented the proposed benchmark using the main existing approaches for signature verification: feature- and time functions-based.<br><b>REFERENCES</b>For further information on the database and on different applications where it has been used, we refer the reader to:[PONE2017] R. Tolosana, R. Vera-Rodriguez, J. Fierrez, A. Morales and J. Ortega-Garcia, "Benchmarking Desktop and Mobile Handwriting across COTS Devices: the e-BioSign Biometric Database.", <i>PLOS ONE, 2017.</i><br><i><br></i><b>INSTRUCTIONS FOR DOWNLOADING e-BioSign-DS1-Signature DB</b><br>1. Download the following license agreement, send by email one signed and scanned copy to <b>atvs@uam.es </b>according to the instructions given in point 2.<b>https://atvs.ii.uam.es/atvs/licenses/e-BioSign-DS1-Signature_License.pdf</b>2. Send an email to <b>atvs@uam.es</b>, as follows:<br><i>Subject</i>:<b> [DATABASE download: e-BioSign-DS1-Signature DB]<br></b><i><br>Body</i>: Your name, e-mail, telephone number, organization, postal mail, purpose for which you will use the database, time and date at which you sent the email with the signed license agreement.<br>3. Once the email copy of the license agreement has been received at ATVS, you will receive an email with a username, a password, and a time slot to download the database.<br>4. Download the database, for which you will need to provide the authentication information given in step 4. After you finish the download, please notify by email to <b>atvs@uam.es</b> that you have successfully completed the transaction.5. For more information, please contact: <b>atvs@uam.es</b><b><br></b><b>ADDITIONAL INFORMATION </b><b><br></b><b>https://atvs.ii.uam.es/atvs/eBioSign-DS1.html<br></b><br><b><br></b><br><b><br></b>
DOI: 10.17632/5gtt248pnc
title: Integrating Grey forecasting and Window data envelopment analysis approach to evaluate and predict logistics performance in Vietnam's third-party freight transportation and last-mile delivery

description: Logistics has become a crucial component of Vietnam's economy, contributing 4.5% to the Gross Domestic Product. The sector has experienced significant growth due to the expansion of e-commerce and Vietnam's emergence as a global manufacturing hub. However, it faces challenges in maintaining efficiency and adopting sustainable practices, particularly during disruptions such as the COVID-19 pandemic. This study forecasts logistics performance and assesses the efficiency of third-party freight transportation and last-mile delivery (3PLs) in Vietnam from 2019 to 2027. It focuses on three key phases: the pre-pandemic period, the recovery phase, and future projections. The goal is to provide actionable insights to enhance efficiency and sustainability within the sector. To assess performance changes over time, a hybrid methodology is employed, which combines Grey Forecasting and Window Data Envelopment Analysis (DEA). This approach analyzes input and output variables, including financial metrics from 12 leading logistics companies in Vietnam. The findings reveal efficiency trends across critical periods, highlight the impacts of cost management, investment, and operational management on performance, and identify areas for improvement, offering a comprehensive framework to guide sustainable logistics development in Vietnam
DOI: 10.17632/nndh863s5t
title: Satiety differentially modulates feeding steps in the jellyfish Cladonema. Mashiba et al.

description: Data of the feeding behavior of Cladonema pacificum jellyfish and associated reduced preparations (e.g., isolated tentacles) under starvation and satiety. These data primarily show that satiety: (a) disorganizes the jellyfish feeding sequence; (b) delays feeding steps and (c) inhibits feeding steps with distinct temporal dynamics.
DOI: 10.17632/prnbt7cv5x
title: Control of tissue oxygenation by S-nitrosohemoglobin in human subjects

description: Data supporting the publication "Control of tissue oxygenation by S-nitrosohemoglobin in human subjects"

Abstract:
S-Nitrosohemoglobin (SNO-Hb) is unique among vasodilators in coupling blood flow to
tissue oxygen requirements, thus fulfilling an essential function of the microcirculation.
However, this essential physiology has not been tested clinically. Reactive hyperemia
following limb ischemia/occlusion is a standard clinical test of microcirculatory function,
which has been ascribed to endothelial nitric oxide (NO). However, endothelial NO
does not control blood flow governing tissue oxygenation, presenting a major quandary.
Here we show in mice and humans that reactive hyperemic responses (i.e., reoxygenation
rates following brief ischemia/occlusion) are in fact dependent on SNO-Hb. First, mice
deficient in SNO-Hb (i.e., carrying C93A mutant Hb refractory to S-nitrosylation)
showed blunted muscle reoxygenation rates and persistent limb ischemia during reactive
hyperemia testing. Second, in a diverse group of humans—including healthy subjects
and patients with various microcirculatory disorders—strong correlations were found
between limb reoxygenation rates following occlusion and both arterial SNO-Hb levels
(n = 25; P = 0.042) and SNO-Hb/total HbNO ratios (n = 25; P = 0.009). Secondary
analyses showed that patients with peripheral artery disease had significantly reduced
SNO-Hb levels and blunted limb reoxygenation rates compared with healthy controls
(n = 8 to 11/group; P &lt; 0.05). Low SNO-Hb levels were also observed in sickle cell
disease, where occlusive hyperemic testing was deemed contraindicated. Altogether,
our findings provide both genetic and clinical support for the role of red blood cells in
a standard test of microvascular function. Our results also suggest that SNO-Hb is a
biomarker and mediator of blood flow governing tissue oxygenation. Thus, increases in
SNO-Hb may improve tissue oxygenation in patients with microcirculatory disorders.

Mouse summary data, and individual mouse pO2 traces.

Human clinical summary data, and individual NIRS measurement files.
DOI: 10.6084/m9.figshare.11955405.v1
title: Revision qPCR_to determine Wolbachia DNA density and viral RNA from the same fly

description: Column headers correspond to the host (Species), Wolbachia infection status (Wolbachia status), Virus infection status (FHV or DCV), Ct values for FHV, DCV, Wolbachia and the control fly gene Actin5C (2 technical replicates for each).
DOI: 10.17632/2ffyvrdd97
title: Dietary compliance with the Mediterranean diet pattern in a randomized clinical trial of patients with quiescent Ulcerative Colitis

description: Supplementary data for the Mediterranean diet intervention trial in patients with Ulcerative Colitis.
DOI: 10.17632/6g4ftskcsf
title: Table 2. Raptors data: concentration of anticoagulant rodenticides detected in liver (ng/g), total number of rodenticides per animal and geographical information.

description: Identification of each raptor species included in the study, with detailed information about the concentration of anticoagulant rodenticides detected in liver (ng/g ww), total number of rodenticides per animal and geographical information.
DOI: 10.17632/n7vjwj34rs
title: Data for: Forecasting of bioaerosol concentration by a Back Propagation neural network model
DOI: 10.17632/vybc47sknf
title: Asymmetric impacts of oil price shocks on government expenditures: Evidence from Saudi Arabia
DOI: 10.6084/m9.figshare.20430705.v2
title: Projection of East Asian winter monsoon using CAM4 model

description: CAM4 model output data that can be used to produce paper figure 6-10.
DOI: 10.6084/m9.figshare.27074590.v1
title: Blue carbon loss

description: Our dataset includes paired reports of soil C<sub>org</sub> stock from both disturbed and intact blue carbon ecosystems (BCEs) from 95 mangrove sites, 35 saltmarsh sites, and 36 seagrass sites worldwide. We categorized disturbances into those causing deep soil disruption—such as the conversion of mangroves and saltmarshes to agriculture or aquaculture and dredging of seagrass meadows—and those causing minimal soil disruption, including mangrove clearance, saltmarsh grazing, and general degradation of BCEs.
DOI: 10.6084/m9.figshare.27895482.v1
title: CNVKit calls on the uveal melanoma cell lines

description: Copy number calling was performed using CNVKit Version 0.9.8 on each of the uveal melanoma cell lines: 92.1Mel202Mel270Mel285MP38MP41MP46OMM1OMM2.3OMM2.5
DOI: 10.17632/2bkz2xnnn5
title: A mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism

description: Plasmids used in the study.
DOI: 10.17632/zvc4jy2d2v
title: Statistical raw data for syntactically dependent tag combinations after core words

description: In order to conclude the pattern of extracted concepts, the different syntactic structures were first categorised. We selected a certain number of patented utterances for DP analysis and manually eliminated invalid and incorrect results from the analysis, retaining the results of 1000 utterances for analysis.
DOI: 10.6084/m9.figshare.12925184.v1
title: Figure15_HESS_1

description: Temporal variation in observed (black line) and modeled (red line) salinity at Baozhen station from February 4 to 24, 2014. The green dashed lines indicate the time before it the wind was realistic and after it was set to 5 m s<sup>-1</sup>.
DOI: 10.6084/m9.figshare.19715029.v3
title: code from SpaceFold paper

description: jupyter notebooks and R code and dataset related to the SpaceFold paper. <br> <strong>BayesPrism_outs.zip </strong>: output from BayesPrism. performed a single run of BayesPrism on each tissue by combining two Visium replicates. sig.rdata: run using signature genes. full.rdata: run using full genes (after a mild selection for expressed genes). <br> <strong>SpaceRanger_outs.zip:</strong> raw output from the Space Ranger. Note that bam files were excluded to reduce the file size. All other files outputed by Space Ranger were included. <br> <strong>features.tsv.gz : </strong>gene annotation from Space Ranger. <br>
DOI: 10.6084/m9.figshare.23626737.v1
title: Helianthemum songaricum and Helianthemum ordosicum.snp.vcf

description: <em>Helianthemum songaricum</em> and<em> Helianthemum ordosicum</em> SNPs obtained by GBS method. 66 individuals of <em>Helianthemum songaricum </em>were sampled in the Yili Valley, Xinjiang, China; 15 individuals of <em>Helianthemum songaricum</em> were sampled in Ming Kush Valley, Naryn, Kyrgyzstan, and 13 individuals of <em>Helianthemum ordosicum</em> were sampled in western Ordos Plateau, Inner Mongolia, China.
DOI: 10.6084/m9.figshare.27201633.v1
title: ESI for manuscript: "Electronic coupling and photoluminescence anisotropy in van-der-Waals-stacks of tungsten disulfide with molecular single crystals" by Aly et al.

description: The supplied files contain raw spectral data as well as the python scripts used for the analyses and generation of the figures presented in the submission. Note that the streakimage class has to be loaded to you python kernel in order to be able to execute the scripts.
DOI: 10.17632/cfhkhmk6rt
title: Analysis of the current tools for optimization of equilibrium constants from potentiometric data_dataset

description: Artificial dataset of six different titrations simulated for a hypothetical hexaprotic acid
DOI: 10.6084/m9.figshare.21201178.v1
title: DLY_50K_012

description: DLY Pigs genotyped by 50K chip
DOI: 10.6084/m9.figshare.28075193.v1
title: CNASafe Dataset

description: Dataset describing parameters and performance of circulating DNA on proprietary cartridge CNASafe
DOI: 10.6084/m9.figshare.28853654.v1
title: Supplemental Figure S1

description: Median (n=9 HC, n=10 RYGB, solid lines) and [25th-75th percentiles] (shaded areas) of glucose fluxes calculated with Model 2. At variance with Figure 5, fluxes are reported in absolute units (g/min). Insets show iAUC over the intervals 0-60min and 0-150min, expressed as grams of ingested D-Glc. a) Liver rate of appearance; b) First-pass liver rate of disposal; c) Liver rate of disposal; d) Peripheral rate of disposal.
DOI: 10.6084/m9.figshare.28930469.v1
title: Research Dataset

description: <pre>This study investigates the predictive accuracy and potential biases of market-based inflation expectations, focusing on zero-coupon inflation swaps and breakeven inflation rates. By employing a regime-dependent framework grounded in Markov-switching autoregressive models, the analysis distinguishes between high- and low-volatility periods to evaluate the performance of these instruments. The findings reveal that short-term instruments (e.g., 12-month swaps) provide near-unbiased forecasts, whereas longer-term instruments exhibit systematic biases, especially during volatile periods, reflecting evolving risk premia and liquidity constraints. Structural break analysis uncovers significant shifts in the relationship between market-based inflation expectations and realized inflation, particularly during disruptive events such as the COVID-19 pandemic and the 2021 energy crisis. Additionally, logistic regressions highlight the VIX as a robust predictor of severe forecast errors, underscoring the amplifying effect of financial market turbulence on inflation expectations, while heightened credit market stress (TED Spread) appears to mitigate extreme forecast deviations, potentially reflecting cautious investor behavior or stabilizing central bank interventions. These results underscore the importance of regime-sensitive forecasting approaches and the integration of systemic risk indicators to improve the reliability of market-based inflation expectations in volatile macro-financial environments.<br></pre>
DOI: 10.6084/m9.figshare.29146292.v5
title: Supplementary Material for review (Revealing the co-occurrence patterns of the group emotions from social media data)

description: <b>For detailed introduction, please download the zip and read the README.docx file</b>This document is the reproducibility instruction for “<b>Revealing the co-occurrence patterns of the group emotions from social media data</b>”.This document provides a detailed explanation of how to reproduce all experimental results, figures and tables presented in the paper, and the key indicators in the abstract by using the shared datasets and source code. The aim is to ensure full reproducibility of the study.Directory Structure after Extraction or Cloning:├── code/ # Scripts for data processing and modelling├── data/ # Raw and intermediate datasets├── results/ # Output results├── README.docx # instructions├── README.md # instructions└── requirement.txt # requirement instructionsCitation for data source:<br>Liu, Z. et al. (2024). <i>Shifting sentiments: analyzing public reaction to COVID-19 containment policies in Wuhan and Shanghai through Weibo data</i>. Humanities and Social Sciences Communications, 11, 1104.<b>Notes and Recommendations:</b>Path Handling: All scripts use relative paths; no modification is necessary.Environment Check: Ensure the Python environment is correctly configured to avoid dependency issues.First-Time Use: It is recommended to run and debug each script step-by-step to better understand the logic.Code Annotations: All scripts are well-commented to facilitate review and modification.<br>
DOI: 10.6084/m9.figshare.4747408.v1
title: Corpus "TUITS" IRÓNICOS

description: Esta es una colección de "tuits" en español irónicos y no irónicos (background) extraídos de la red social Twitter. La parte irónica fue curada a mano.<br>El procedimiento para obtener la colección fue el siguiente:<br>* Para los textos irónicos se extrajo "tuits" con los hashtags #ironía y #sarcasmo* De los "tuits" extraidos, manualmente se etiquetaron los que se consideraron irónicos* Para los textos de background, se extrajeron "tuits" con palabras normales, eg. donde o que* Para mayor detalle del procedimiento etiquetación consultar este el reporte técnico y para mayor detalle de la recolección pueden consultar la siguiente tesis:<br>Jasso, Gabriela: Identificación de ironía en textos cortos. Facultad de ingeniería, Univesidad Nacional Autónoma de México.. Facultad de Ingeniería, Universidad Nacional Autónoma de México. 2016.<br>
DOI: 10.17632/nt9vbp7dpx
title: DataSet of the First Iteration of studying Wadi Hanifah's Place-Image and -Identity After the Rehabilitation 

description: The survey producing this data was used for a study that aimed to examine the impacts of a large-scale rehabilitation project of an urban ecosystem, particularly in terms of its place-image and place-identity. The selected case-study was that of Wadi Hanifah, a valley located in Riyadh, Saudi Arabia. The questions aimed to examine the perceptions, uses, popularity, and attachment through the meanings and perceptions people tie to it, through the physical environment, and through the activities people par-take in at the Wadi. The data also provides basic information of age, gender, nationality, and residency.
DOI: 10.17632/pmzdpf33sh
title: Caderno didático - Estatística Descritiva

description: Este caderno didático com abordagem de estatística, voltado especificamente ao tema estatística descritiva, abordado em diferentes cursos de graduação, foi elaborado com o objetivo auxiliar e contribuir com professores que trabalham com este tema em suas respectivas disciplinas. Os principais conteúdos abordados neste caderno didático são: - Estatística Descritiva - Definições e Conceitos - Análise Exploratória dos dados - Distribuições de Frequência - Exercícios e Aplicações
DOI: 10.6084/m9.figshare.14256326.v1
title: Transcripts of the interviews

description: These documents present transcripts of the interviews with school teachers and an administrator. The primary study was conducted as a part of a qualitative research. This data serve as an evidence of the reseatch "<b>Teachers’ perceptions of collaborative culture and its effect on their professional practice in Kazakhstan" </b> and its outcomes.
DOI: 10.6084/m9.figshare.14883552.v1
title: Extreme heat increases plant mortality risk

description: Two glasshouse experiments exposed 20 broadleaf evergreen tree/shrub species (n=10 plants per species) to an experimental drought and heatwave. Soil water content was gradually decreased for half of the potted plants (n=5 plants per species) over a period of five weeks to simulate a realistic drought with moderate intensity, before all plants were exposed to a six-day heatwave with maximum air temperature of 42 °C. Four treatments include: C, control; D, drought; C+HW, control + heatwave; D+HW, drought + heatwave. Measurements include: leaf saturated osmotic potential, wood density, midday leaf water potential, midday stomatal conductance, leaf critical temperature, maximum leaf surface temperature, thermal safety margin, and whole-plant crown scorch.
DOI: 10.17632/br9m4ccg2t
title: Gastrointestinal adverse events associated with use of biologic therapies available for psoriasis: a systematic review of pharmacovigilance studies

description: Biologic therapies have revolutionized psoriasis treatment in the past decade. While clinical trials identified diarrhea and gastrointestinal (GI) upset as common adverse events (AEs), there is limited characterization of these events beyond inflammatory bowel disease (IBD). In contrast to clinical trials with strict inclusion criteria and safety analyses confounded by drop-out rates, pharmacovigilance studies evaluate spontaneous real-world AE reports of a given population. This systematic review examines pharmacovigilance evidence regarding rate and onset of GI events with psoriasis biologic therapies.
DOI: 10.6084/m9.figshare.22657483.v1
title: NPP and its above- and below-ground allocations in China's grasslands

description: ANPP are acquired from published literatures and BNPP is determined by combining ANPP and MODIS NPP products.
DOI: 10.17632/rxm98px352
title: Two-echelon routing problem benchmark instances

description: Datasets contain several types of instances that have been used in a two-echelon routing problem for last-mile delivery with outsourcing. Each instance contains the coordinates of the customers, transfer points (satellites), and depot, together with the customer demand. For more details, the descriptions of how the data sets are generated are available at Huang & Ardiansyah (2019).
DOI: 10.6084/m9.figshare.11695467.v1
title: co-morbidities (malnutrition, diabetes, anaemia, HIV, hypertension) and quality of life in persons with tuberculosis in the Philippines

description: Full dataset available with associated meta-data for a cross-sectional study in consenting adult Filipino persons registered for tuberculosis treatment at national TB treatment clinics under the TB-DOTS programme. <br>The study protocol is available at: Malnutrition and diabetes in tuberculosis treatment programs in the Philippines ISRCTN12506117<br>Publications using this dataset are listed <br><br><br>
DOI: 10.6084/m9.figshare.27969417.v1
title: CESTsubCode

description: Test cases and input data used in the manuscript: Subgrid correction of storm surge modeling in orthogonal curvilinear coordinates
DOI: 10.6084/m9.figshare.5558530.v2
title: Table 1

description: List of AIC, -2 log-likelihood and P-value for the hypothesis models.