cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3833383_d4
title: Additional file 4: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: Number of enhancer candidates overlapping with TEs in individual TE families. TE Superfamily column states which TE superfamily the TEs belong to, the TE family column provides the TE family IDs, the family members column lists the total number of elements remaining after removing short and intronic TEs (see methods). For V2-IST, Husk and total enhancer candidates, the number of candidates overlapping at least 80% with TEs within a family and the percent of TEs overlapping with enhancer candidates within the particular family are shown. In the p-val column, the p values calculated using the binomial test with Bonferoni correction are given for the total number of enhancer-containing TEs in a given TE family. The cells highlighted in yellow indicate the TE families significantly enriched for enhancer-containing TEs. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3833398_d1
title: Additional file 1: of MicroRNA profiling of ovarian granulosa cell tumours reveals novel diagnostic and prognostic markers

description: Clinico-pathological characteristics of GCT tumours included in this study. *Adult-GCT patient samples with unknown FIGO stage information and excluded from recurrence analysis; â  Adult-GCT patient sample with an aggressive clinical progression (progressive disease and tumour recurrence) and excluded from recurrence analysis; aClinical diagnosis based on histopathology; bStaged according to the International Federation of Gynaecology and Obstetrics (FIGO) system. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3833377_d5.v1
title: Additional file 3: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Description of the markers used for the analyses including physical position, number of informative meiosis, number of meiosis with known phase. (XLSX 320Â kb)
DOI: 10.6084/m9.figshare.c.3833383_d5.v1
title: Additional file 5: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of tissue-specific and shared candidates and their linked genes. Columns from the left to right indicate: candidate chromosome location and coordinates and ID followed by chromosome coordinates, IDs, orientation, expression levels in V2-IST and husk of upstream and downstream adjacent genes. The significance of differential expression for flanking genes is indicated. NA means that the upstream or downstream gene did not fulfil the requirement to be associated as a target gene. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3833377_d5
title: Additional file 3: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Description of the markers used for the analyses including physical position, number of informative meiosis, number of meiosis with known phase. (XLSX 320Â kb)
DOI: 10.6084/m9.figshare.c.3833383_d5
title: Additional file 5: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of tissue-specific and shared candidates and their linked genes. Columns from the left to right indicate: candidate chromosome location and coordinates and ID followed by chromosome coordinates, IDs, orientation, expression levels in V2-IST and husk of upstream and downstream adjacent genes. The significance of differential expression for flanking genes is indicated. NA means that the upstream or downstream gene did not fulfil the requirement to be associated as a target gene. (XLSX 171 kb)
DOI: 10.15468/dl.pk8x67
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax mongolicus (Schmidt, 1925) Zhou, He, Ma, Xu, Zhai, Guan, Wang & Shi, 2022"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039447-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833383_d6.v1
title: Additional file 6: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of primers used in ChIP-qPCR experiments. The first and second column indicate the loci the primers anneal to, and the name of the primer pairs, respectively. The right column indicates the sequences of the forward (F:) and reverse (R:) primers for each pair. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3833377_d6.v1
title: Additional file 4: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: OvineExpectedRecombinationRate.txt. This file contains information about physical and expected recombination rate for the entire sheep genome assembly (ISGC Oar_v3.1). The first line gives the correct setting to load it in the UCSC genome browser. This file contains four columns, the chromosome, the physical position for the previous markers, the physical position for the markers, and the expected recombination rate between the two markers. (TXT 1492Â kb)
DOI: 10.6084/m9.figshare.c.3833383_d6
title: Additional file 6: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: List of primers used in ChIP-qPCR experiments. The first and second column indicate the loci the primers anneal to, and the name of the primer pairs, respectively. The right column indicates the sequences of the forward (F:) and reverse (R:) primers for each pair. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3833377_d7.v1
title: Additional file 5: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: OvineGeneticMap.IMF.txt. This file contains information about physical and genetics positions for the entire sheep genome assembly (ISGC Oar_v3.1). The first line gives the correct setting to load it in the UCSC genome browser. This file contains four columns, the chromosome, and the physical position for the previous markers, the physical position for the markers, and the genetic position for a marker. (TXT 1492Â kb)
DOI: 10.6084/m9.figshare.c.3834775_d2.v1
title: Additional file 2 of Visibiome: an efficient microbiome search engine based on a scalable, distributed architecture

description: Spreadsheet comparing Open and Closed reference OTU picking The file is a spreadsheet in Microsoft Excel format. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3834862_d14
title: Additional file 8: Table S8. of Oncogenic long noncoding RNA landscape in breast cancer

description: Gene ontology term enrichment (GO) and KEGG pathway analysis for linc00511 in TCGA. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3834862_d13
title: Additional file 7: Table S7. of Oncogenic long noncoding RNA landscape in breast cancer

description: Differentially expressed genes of RNA-seq in our Cohort. (XLS 2231Â kb)
DOI: 10.6084/m9.figshare.c.3834904_d5.v1
title: Additional file 4: of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in control testes and ovaries. (XLS 1933kb)
DOI: 10.6084/m9.figshare.c.3834904_d5
title: Additional file 4: of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in control testes and ovaries. (XLS 1933kb)
DOI: 10.6084/m9.figshare.c.3834904_d7.v1
title: Additional file 6: of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in 40 dpf testes compared to 60 dpf testes. (XLS 230kb)
DOI: 10.6084/m9.figshare.c.3834904_d8.v1
title: Additional file 7:ďťż of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in MT-treated testes compared to ovaries. (XLS 3834kb)
DOI: 10.6084/m9.figshare.c.3834904_d9.v1
title: Additional file 8: of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in 40 dpf MT-treated testes compared to 60 dpf testes. (XLS 40kb)
DOI: 10.6084/m9.figshare.c.3834904_d7
title: Additional file 6: of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in 40 dpf testes compared to 60 dpf testes. (XLS 230kb)
DOI: 10.6084/m9.figshare.c.3834904_d8
title: Additional file 7:ďťż of Histological and transcriptomic effects of 17Îą-methyltestosterone on zebrafish gonad development

description: Genes differentially expressed by 2-fold or more in MT-treated testes compared to ovaries. (XLS 3834kb)
DOI: 10.15468/dl.dxeyfg
title: Occurrence Download

description: A dataset containing 9724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma tigrinum (Green, 1825))"
 ]
}

 The dataset includes 9724 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039448-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.548x39
title: Occurrence Download

description: A dataset containing 120034 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eurema Hübner, 1819"
 ]
}

 The dataset includes 120034 records from 487 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039411-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13923821
title: Structural Model of a Bacterial Focal Adhesion Complex from Myxococcus xanthus
DOI: 10.5281/zenodo.13923822
title: Structural Model of a Bacterial Focal Adhesion Complex from Myxococcus xanthus
DOI: 10.6084/m9.figshare.c.3836818_d10
title: MOESM19 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

description: Additional file 19. HaploReg annotations of the 30 lead-SNP and SNPs in the corresponding haplotype blocks. Haplotype block: SNPs in high linkage disequilibrium, r 2 &gt; 0.8. SNP positions were converted to hg19 coordinates.
DOI: 10.6084/m9.figshare.c.3836863_d2.v1
title: Additional file 2: of Characteristics of the specific humoral response in patients with advanced solid tumors after active immunotherapy with a VEGF vaccine, at different antigen doses and using two distinct adjuvants

description: IgE antibody titers specific to human VEGF. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3836863_d2
title: Additional file 2: of Characteristics of the specific humoral response in patients with advanced solid tumors after active immunotherapy with a VEGF vaccine, at different antigen doses and using two distinct adjuvants

description: IgE antibody titers specific to human VEGF. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3836818_d14.v1
title: MOESM22 of Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

description: Additional file 22. Primer sequences and PCR conditions for targeted bisulfite sequencing and genotyping 13 SNPs.
DOI: 10.15468/dl.zrwztw
title: Occurrence Download

description: A dataset containing 19336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (A global database for the distributions of crop wild relatives, United States National Plant Germplasm System Collection, EURISCO, The European Genetic Resources Search Catalogue, Tropicos MO Specimen Data, The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris), The New York Botanical Garden Herbarium (NY), iNaturalist Research-grade Observations, Bioversity Collecting Mission Database, NMNH Extant Specimen Records (USNM, US), Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares))",
 "TaxonKey is Gossypium hirsutum L."
 ]
}

 The dataset includes 19336 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039450-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3840112_d1.v1
title: Additional file 1: of Decision support during electronic prescription to stem antibiotic overuse for acute respiratory infections: a long-term, quasi-experimental study

description: Coded dataset for the study. (XLS 263Â kb)
DOI: 10.6084/m9.figshare.c.3840112_d1
title: Additional file 1: of Decision support during electronic prescription to stem antibiotic overuse for acute respiratory infections: a long-term, quasi-experimental study

description: Coded dataset for the study. (XLS 263Â kb)
DOI: 10.6084/m9.figshare.c.3840925_d1.v1
title: Additional file 1: Table S1. of Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response

description: The RNA-Seq studies used in the analysis. Table S4. Selected gene modules identified from the network. Table S5. The percentage of genes with conserved interactions within each module. (XLSX 45 kb)
DOI: 10.15468/dl.ddm2hc
title: Occurrence Download

description: A dataset containing 9724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma tigrinum (Green, 1825))"
 ]
}

 The dataset includes 9724 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039452-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14286103
title: Context dependent dopamine and striatal activity for Fraser et al

description: Data files associated with Fraser et al., paper
DOI: 10.15468/dl.w668fy
title: Occurrence Download

description: A dataset containing 74630 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax ridibundus (Pallas, 1771)"
 ]
}

 The dataset includes 74630 records from 1589 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039451-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng3ve5
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus roseus Ledeb."
 ]
}

 The dataset includes 53 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036196-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgma0c
title: Occurrence Download

description: A dataset containing 24900 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Dendrocygna javanica (Horsfield, 1821)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24900 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042638-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8wnfy
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus phylloglotta (Frid.) A.Gust.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084183-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsuz82
title: Occurrence Download

description: A dataset containing 30527 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Chinese Taipei",
 "Country is China"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Centropus Illiger, 1811"
 ]
}

 The dataset includes 30527 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140439-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvvncq
title: Occurrence Download

description: A dataset containing 991 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Deroceras klemmi Grossu, 1972",
 "TaxonKey is Derris ferruginea (Wall. ex Voigt) Benth.",
 "TaxonKey is Derris microphylla (Miq.) Backer",
 "TaxonKey is Derris trifoliata Lour.",
 "TaxonKey is Desmodium asperum (Poir.) Desv.",
 "TaxonKey is Desmodium dichotomum (Willd.) DC."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 991 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042639-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96gqe9
title: Occurrence Download

description: A dataset containing 1082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.86664 51.69708,5.11908 51.69708,5.11908 52.32191,3.86664 52.32191,3.86664 51.69708))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Osmia Panzer, 1806",
 "Year 2000-2020"
 ]
}

 The dataset includes 1082 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096422-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybqmfr
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calamus schistoacanthus Blume"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006136-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25884313
title: Training data for arXiv:2401.04070

description: The pickle file contains the training data for arXiv:2401.04070<br><br>To access it, use a python script with the following <br>```pythonimport picklewith open("train_val_test.p", "rb") as f: data = pickle.load(f)```<br>This will give a huge dictionary with the following structure{"train": {"structures": [], "energies": [], "forces": [], "stresses":[], "id": []}, "validation": xxx, "test": ...
DOI: 10.15468/dl.8mcu4k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Lobelia reniformis Cham."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096393-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugesz4
title: Occurrence Download

description: A dataset containing 809 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Desmodium discolor Vogel",
 "TaxonKey is Desmodium distortum (Aubl.) J.F.Macbr.",
 "TaxonKey is Ormocarpum sennoides subsp. hispidum (Willd.) Brenan & J.Léonard"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 809 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042640-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n79pjz
title: Occurrence Download

description: A dataset containing 105845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-01-04",
 "EventDate is less than or equal to 2024-02-03",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 105845 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084111-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xh5ykq
title: Occurrence Download

description: A dataset containing 33161597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinopterygii"
 ]
}

 The dataset includes 33161597 records from 2700 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096415-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15147968
title: Data and code for Exploring the thermodynamics of disordered materials with quantum computing

description: This Zenodo repository contains the data used in the "Exploring the thermodynamics of disordered materials with quantum computing" paper published in Science Advances. The code used for the data analysis can be found at: https://github.com/cmc-ucl/QA_solid_solutions/tree/main .
DOI: 10.5281/zenodo.15147969
title: Data and code for Exploring the thermodynamics of disordered materials with quantum computing

description: This Zenodo repository contains the data used in the "Exploring the thermodynamics of disordered materials with quantum computing" paper published in Science Advances. The code used for the data analysis can be found at: https://github.com/cmc-ucl/QA_solid_solutions/tree/main .
DOI: 10.17638/datacat.liverpool.ac.uk/3006
title: Thirring Model in 2+1d with Wilson kernel Domain Wall Fermions

description: Monte Carlo generated datasets for symmetry breaking fermion bilinear condensate on 16^3xLs, with Ls=24,32,48,72,96,120
DOI: 10.15468/dl.649tue
title: Occurrence Download

description: A dataset containing 1713 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periconia byssoides"
 ]
}

 The dataset includes 1713 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061318-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.