cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e130784v1
title: Data and Code for: Child Marriage Bans and Female Schooling and Labor Market Outcome: Evidence from Natural Experiments in 17 Low- and Middle-Income Countries

description: I measure the effect of child marriage bans on female educational attainment and employment using a difference-in-differences approach employing subnational spatial and cohort variation in a sample of over 250,000 female respondents from 17 low- and middle-income countries banning child marriage between 1995 and 2012. My results using the full study sample suggest that raising the minimum legal age of marriage to 18 increased age at marriage, age at first birth, and the likelihood of employment. In urban areas, the bans also reduced child marriage and increased educational attainment. Effects of the bans typically were smaller in rural areas, in countries with a lower pre-ban minimum legal age at marriage, for cohorts with lower temporal exposure to the ban, and for reducing marriage at ages just below 18, consistent with imperfect enforcement.<br>
DOI: 10.6084/m9.figshare.20300779
title: High clustering rate and genotypic drug-susceptibility screening for the newly recommended anti-tuberculosis drugs among global extensively drug-resistant <i>Mycobacterium tuberculosis</i> isolates

description: Multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant tuberculosis (XDR-TB) make TB difficult to control. Global susceptibility data for six newly recommended anti-TB drugs against M/XDR-TB are still limited. Using publicly available whole-genome sequences, we determined the proportion of 513 phenotypically XDR-TB isolates that carried mutations associated with resistance against these drugs (bedaquiline, clofazimine, linezolid, delamanid, pretomanid and cycloserine). Mutations of <i>Rv0678</i> and <i>Rv1979c</i> were detected in 69/513 isolates (13.5%) for bedaquiline resistance and 79/513 isolates (15.4%) for clofazimine resistance with additional <i>mmpL5</i> mutations. Mutations conferring resistance to delamanid were detected in <i>fbiB</i> and <i>ddn</i> genes for 11/513 isolates (2.1%). For pretomanid, a mutation was detected in the <i>ddn</i> gene for 3/513 isolates (0.6%). Nineteen mutations of <i>pykA, cycA, ald</i>, and <i>alr</i> genes, conferring resistance to cycloserine, were found in 153/513 isolates (29.8%). No known mutations associated with linezolid resistance were detected. Cluster analysis showed that 408/513 isolates fell within 99 clusters and that 354 of these isolates were possible primary drug-resistant TB (292 XDR-TB, 57 pre-XDR-TB and 5 MDR-TB). Clonal transmission of primary XDR isolates might contribute significantly to the high prevalence of DR-TB globally.
DOI: 10.6084/m9.figshare.20300779.v2
title: High clustering rate and genotypic drug-susceptibility screening for the newly recommended anti-tuberculosis drugs among global extensively drug-resistant <i>Mycobacterium tuberculosis</i> isolates

description: Multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant tuberculosis (XDR-TB) make TB difficult to control. Global susceptibility data for six newly recommended anti-TB drugs against M/XDR-TB are still limited. Using publicly available whole-genome sequences, we determined the proportion of 513 phenotypically XDR-TB isolates that carried mutations associated with resistance against these drugs (bedaquiline, clofazimine, linezolid, delamanid, pretomanid and cycloserine). Mutations of <i>Rv0678</i> and <i>Rv1979c</i> were detected in 69/513 isolates (13.5%) for bedaquiline resistance and 79/513 isolates (15.4%) for clofazimine resistance with additional <i>mmpL5</i> mutations. Mutations conferring resistance to delamanid were detected in <i>fbiB</i> and <i>ddn</i> genes for 11/513 isolates (2.1%). For pretomanid, a mutation was detected in the <i>ddn</i> gene for 3/513 isolates (0.6%). Nineteen mutations of <i>pykA, cycA, ald</i>, and <i>alr</i> genes, conferring resistance to cycloserine, were found in 153/513 isolates (29.8%). No known mutations associated with linezolid resistance were detected. Cluster analysis showed that 408/513 isolates fell within 99 clusters and that 354 of these isolates were possible primary drug-resistant TB (292 XDR-TB, 57 pre-XDR-TB and 5 MDR-TB). Clonal transmission of primary XDR isolates might contribute significantly to the high prevalence of DR-TB globally.
DOI: 10.6084/m9.figshare.20229311
title: Human Borna disease virus 1 encephalitis shows marked pro-inflammatory biomarker and tissue immunoactivation during the course of disease

description: Human Borna disease virus 1 (BoDV-1) encephalitis is a severe emerging disease with a very high case-fatality rate. While the clinical disease, case definitions, diagnostic algorithms and neuropathology have been described, very little is known about the immunological processes of human BoDV-1 encephalitis. Here, we analyzed serum and cerebrospinal fluid (CSF) samples from 10 patients with fatal BoDV-1 encephalitis for changes of different cytokines, chemokines, growth factors and other biomarkers over time. From one of these individuals, also autoptic formalin-fixed brain tissue was analyzed for the expression of inflammatory biomarkers by mRNA levels and immunostaining; in a further patient, only formalin-fixed brain tissue was available and examined in addition. A marked and increasing immune activation from the initial phase to the last phase of acute BoDV-1 encephalitis is shown in serum and CSF, characterized by cytokine concentration changes (IFNγ, IL-5, IL-6, IL-9, IL-10, IL-12p40, IL-13, IL-18, TGF-β1) with a predominantly pro-inflammatory pattern over time. IFNγ production was demonstrated in endothelial cells, astrocytes and microglia, IL-6 in activated microglia, and TGF-β1 in endothelial cells, activated astrocytes and microglia. This was paralleled by an increase of chemokines (CCL-2, CCL-5, CXCL-10, IL-8) to attract immune cells to the site of infection, contributing to inflammation and tissue damage. Pathologically low growth factor levels (BDNF, β-NGF, PDGF) were seen. Changed levels of arginase and sTREM further fostered the pro-inflammatory state. This dysbalanced, pro-inflammatory state likely contributes importantly to the fatal outcome of human BoDV-1 encephalitis, and might be a key target for possible treatment attempts.
DOI: 10.6084/m9.figshare.20229311.v2
title: Human Borna disease virus 1 encephalitis shows marked pro-inflammatory biomarker and tissue immunoactivation during the course of disease

description: Human Borna disease virus 1 (BoDV-1) encephalitis is a severe emerging disease with a very high case-fatality rate. While the clinical disease, case definitions, diagnostic algorithms and neuropathology have been described, very little is known about the immunological processes of human BoDV-1 encephalitis. Here, we analyzed serum and cerebrospinal fluid (CSF) samples from 10 patients with fatal BoDV-1 encephalitis for changes of different cytokines, chemokines, growth factors and other biomarkers over time. From one of these individuals, also autoptic formalin-fixed brain tissue was analyzed for the expression of inflammatory biomarkers by mRNA levels and immunostaining; in a further patient, only formalin-fixed brain tissue was available and examined in addition. A marked and increasing immune activation from the initial phase to the last phase of acute BoDV-1 encephalitis is shown in serum and CSF, characterized by cytokine concentration changes (IFNγ, IL-5, IL-6, IL-9, IL-10, IL-12p40, IL-13, IL-18, TGF-β1) with a predominantly pro-inflammatory pattern over time. IFNγ production was demonstrated in endothelial cells, astrocytes and microglia, IL-6 in activated microglia, and TGF-β1 in endothelial cells, activated astrocytes and microglia. This was paralleled by an increase of chemokines (CCL-2, CCL-5, CXCL-10, IL-8) to attract immune cells to the site of infection, contributing to inflammation and tissue damage. Pathologically low growth factor levels (BDNF, β-NGF, PDGF) were seen. Changed levels of arginase and sTREM further fostered the pro-inflammatory state. This dysbalanced, pro-inflammatory state likely contributes importantly to the fatal outcome of human BoDV-1 encephalitis, and might be a key target for possible treatment attempts.
DOI: 10.6084/m9.figshare.20387145.v1
title: MAG38.functional_and_taxonomic_table.txt

description: Annotations as described in the publication
DOI: 10.6084/m9.figshare.20387145
title: MAG38.functional_and_taxonomic_table.txt

description: Annotations as described in the publication
DOI: 10.7284/148830
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP0401 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148828
title: Gyrocompass data collected during research cruise NBP0401 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148829
title: INS (Inertial Navigation System) data collected during research cruise NBP0401 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20387154.v1
title: Siliceabacter maunaloa assembly

description: Assembly file for MAG described in the publication
DOI: 10.6084/m9.figshare.20387154
title: Siliceabacter maunaloa assembly

description: Assembly file for MAG described in the publication
DOI: 10.5281/zenodo.6915537
title: Continuous Integration and Delivery Practices for Cyber-Physical Systems: An Interview-Based Study - Online Dataset

description: This package contains the online dataset of the manuscript: Continuous Integration and Delivery Practices for Cyber-Physical Systems: An Interview-Based Study
DOI: 10.6084/m9.figshare.20387157
title: Siliceabacter maunaloa

description: Open reading frames reported in publication
DOI: 10.6084/m9.figshare.20387157.v1
title: Siliceabacter maunaloa

description: Open reading frames reported in publication
DOI: 10.1184/r1/19663527.v1
title: Supplementary Material for Manuscript -"Comparative Computational Study to Augment Substrate Binding Affinity of 4-hydroxybenzoate octaprenyltransferase (ubiA) enzymes Encoded in the Genomes of Multiple Environmental Purple Photosynthetic Bacteria"

description: This is the Supplemental Material for the Manuscript titled - <strong>"Comparative Computational Study to Augment Substrate Binding Affinity of 4-hydroxybenzoate octaprenyltransferase (ubiA) enzymes Encoded in the Genomes of Multiple Environmental Purple Photosynthetic Bacteria."</strong> The dataset was generated as eloborated in the Methodology section - <strong>Extended Motif Discovery by Protein Sequence Cluster Analysis of 4-Hydroxybenzoate octaprenyl transferase (ubiA)</strong> For discovery of un-gapped conserved motifs across 4038 ubiA protein sequences.
DOI: 10.5281/zenodo.6915551
title: Classification of unstructured text in types of violence against women using text mining and Machine learning techniques

description: These are the data used for the development of the investigation. This file was extracted from our mongoDB database. The data set contains real news of violence against women, which were organized with their date, the title and the body of the news.
DOI: 10.5281/zenodo.6915550
title: Classification of unstructured text in types of violence against women using text mining and Machine learning techniques

description: These are the data used for the development of the investigation. This file was extracted from our mongoDB database. The data set contains real news of violence against women, which were organized with their date, the title and the body of the news.
DOI: 10.6084/m9.figshare.20387082
title: Dataset_Scalon et al_Biogeosci.csv

description: Nutrient concentration in different organs from plant species from Cerrado and Cerradão used in the paper: "Contrasting strategies of nutrient demand and use between savanna and forest ecosystems in a neotropical transition zone"
DOI: 10.6084/m9.figshare.20387082.v1
title: Dataset_Scalon et al_Biogeosci.csv

description: Nutrient concentration in different organs from plant species from Cerrado and Cerradão used in the paper: "Contrasting strategies of nutrient demand and use between savanna and forest ecosystems in a neotropical transition zone"
DOI: 10.5517/ccdc.csd.cc28td6q
title: CCDC 2109773: Experimental Crystal Structure Determination

description: Related Article: Rollania Negi, Tapan Kumar Jena, Jyoti, Nikhil Kumar Tuti, Roy Anindya, Faiz Ahmed Khan|2022|Org.Biomol.Chem.|20|5820|doi:10.1039/D2OB00595F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tprk
title: CCDC 2110069: Experimental Crystal Structure Determination

description: Related Article: Rollania Negi, Tapan Kumar Jena, Jyoti, Nikhil Kumar Tuti, Roy Anindya, Faiz Ahmed Khan|2022|Org.Biomol.Chem.|20|5820|doi:10.1039/D2OB00595F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tpxq
title: CCDC 2110074: Experimental Crystal Structure Determination

description: Related Article: Rollania Negi, Tapan Kumar Jena, Jyoti, Nikhil Kumar Tuti, Roy Anindya, Faiz Ahmed Khan|2022|Org.Biomol.Chem.|20|5820|doi:10.1039/D2OB00595F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24ty42
title: CCDC 1991134: Experimental Crystal Structure Determination

description: Related Article: Shashank Singh, Krishna N. Tripathi, Ravi P. Singh|2022|Org.Biomol.Chem.|20|5716|doi:10.1039/D2OB00943A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq148
title: CCDC 2166129: Experimental Crystal Structure Determination

description: Related Article: Amol Prakash Pawar, Jyothi Yadav, Atul Jankiram Dolas, Eldhose Iype, Krishnan Rangan, Indresh Kumar|2022|Org.Biomol.Chem.|20|5747|doi:10.1039/D2OB00961G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6v1h
title: CCDC 2181316: Experimental Crystal Structure Determination

description: Related Article: Shashank Singh, Krishna N. Tripathi, Ravi P. Singh|2022|Org.Biomol.Chem.|20|5716|doi:10.1039/D2OB00943A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20387169
title: alteromonas MAGs for STAMPS 2022 GToTree tutorial

description: https://hackmd.io/@astrobiomike/STAMPS-2022-GToTree
DOI: 10.6084/m9.figshare.20387169.v1
title: alteromonas MAGs for STAMPS 2022 GToTree tutorial

description: https://hackmd.io/@astrobiomike/STAMPS-2022-GToTree
DOI: 10.5066/p9v79qmg
title: Chemistry data for assessment of the containment pond at Pinyon Plain Mine, 2021

description: These data are comprised of measurements of elements (e.g., uranium, cobalt, nickel, copper, zinc, cadmium, lead, etc.), major anions (chloride, nitrite+nitrate as nitrogen, sulfate, etc.), organic carbon, and general water quality characteristics in Pinyon Plain Mine containment pond water, invertebrate, vegetation and sediment samples, collected in calendar year 2021.
DOI: 10.6084/m9.figshare.20387187
title: Secondary Gravity Waves Emitted from the Kelvin-Helmholtz Instability Induced by Idealized Inertial Gravity Waves

description: <sub>The dataset for the manuscript " Secondary Gravity Waves Emitted from the Kelvin-Helmholtz Instability Induced by Idealized Inertial Gravity Waves"</sub>
DOI: 10.6084/m9.figshare.20387187.v1
title: Secondary Gravity Waves Emitted from the Kelvin-Helmholtz Instability Induced by Idealized Inertial Gravity Waves

description: <sub>The dataset for the manuscript " Secondary Gravity Waves Emitted from the Kelvin-Helmholtz Instability Induced by Idealized Inertial Gravity Waves"</sub>
DOI: 10.7284/148790
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP0402 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148788
title: Gyrocompass data collected during research cruise NBP0402 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148789
title: INS (Inertial Navigation System) data collected during research cruise NBP0402 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148787
title: Multibeam Echosounder data collected during research cruise NBP0402 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc2b8njt
title: CCDC 2153276: Experimental Crystal Structure Determination

description: Related Article: Yuhong Tian, Fengdi Wu, Shiqi Jia, Xiangnan Gong, Hui Mao, Pengfei Wang, Wenling Qin, Hailong Yan|2022|Org.Lett.|24|5073|doi:10.1021/acs.orglett.2c01842
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmr0r
title: CCDC 2163924: Experimental Crystal Structure Determination

description: Related Article: Yuhong Tian, Fengdi Wu, Shiqi Jia, Xiangnan Gong, Hui Mao, Pengfei Wang, Wenling Qin, Hailong Yan|2022|Org.Lett.|24|5073|doi:10.1021/acs.orglett.2c01842
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmr1s
title: CCDC 2163925: Experimental Crystal Structure Determination

description: Related Article: Yuhong Tian, Fengdi Wu, Shiqi Jia, Xiangnan Gong, Hui Mao, Pengfei Wang, Wenling Qin, Hailong Yan|2022|Org.Lett.|24|5073|doi:10.1021/acs.orglett.2c01842
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2byl63
title: CCDC 2173385: Experimental Crystal Structure Determination

description: Related Article: Yuhong Tian, Fengdi Wu, Shiqi Jia, Xiangnan Gong, Hui Mao, Pengfei Wang, Wenling Qin, Hailong Yan|2022|Org.Lett.|24|5073|doi:10.1021/acs.orglett.2c01842
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0xbn
title: CCDC 2175621: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Li, Yong You, Ting-Jia Sun, Yan-Ping Zhang, Jian-Qiang Zhao, Zhen-Hua Wang, Wei-Cheng Yuan|2022|Org.Lett.|24|5120|doi:10.1021/acs.orglett.2c01959
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0xcp
title: CCDC 2175622: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Li, Yong You, Ting-Jia Sun, Yan-Ping Zhang, Jian-Qiang Zhao, Zhen-Hua Wang, Wei-Cheng Yuan|2022|Org.Lett.|24|5120|doi:10.1021/acs.orglett.2c01959
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0xdq
title: CCDC 2175623: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Li, Yong You, Ting-Jia Sun, Yan-Ping Zhang, Jian-Qiang Zhao, Zhen-Hua Wang, Wei-Cheng Yuan|2022|Org.Lett.|24|5120|doi:10.1021/acs.orglett.2c01959
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6x7r
title: CCDC 2181384: Experimental Crystal Structure Determination

description: Related Article: Yuhong Tian, Fengdi Wu, Shiqi Jia, Xiangnan Gong, Hui Mao, Pengfei Wang, Wenling Qin, Hailong Yan|2022|Org.Lett.|24|5073|doi:10.1021/acs.orglett.2c01842
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.