cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6513462
title: A computational toolbox to investigate the metabolic potential and resource allocation in fission yeast

description: Computational models and figure data for the publication "A computational toolbox to investigate the metabolic potential and resource allocation in fission yeast" (preprint on <em>bioRxiv</em>). Data put together by Pranas Grigaitis, p.grigaitis [at] vu.nl. <em>Abstract</em> The fission yeast <em>Schizosaccharomyces pombe</em> is a popular eukaryal model organism for cell division and cell cycle studies. With this extensive knowledge of its cell and molecular biology, <em>S. pombe</em> also holds promise for use in metabolism research and industrial applications. However, unlike the baker’s yeast <em>Saccharomyces cerevisiae</em>, a major workhorse in these areas, cell physiology and metabolism of <em>S. pombe</em> remain less explored. One way to advance understanding of organism-specific metabolism is construction of computational models and their use for hypothesis testing. To this end, we leverage existing knowledge of <em>S. cerevisiae</em> to generate a manually-curated high-quality reconstruction of <em>S. pombe’s</em> metabolic network, including a proteome-constrained version of the model. Using these models, we gain insights into the energy demands for growth, as well as ribosome kinetics in <em>S. pombe</em>. Furthermore, we predict proteome composition and identify growth-limiting constraints that determine optimal metabolic strategies under different glucose availability regimes, and reproduce experimentally determined metabolic profiles. Notably, we find similarities in metabolic and proteome predictions of <em>S. pombe</em> with <em>S. cerevisiae</em>, which indicate that similar cellular resource constraints operate to dictate metabolic organization. With these use cases, we show, on the one hand, how these models provide an efficient means to transfer metabolic knowledge from a well-studied to a lesser-studied organism, and on the other, how they can successfully be used to explore the metabolic behaviour and the role of resource allocation in driving different strategies in fission yeast.
description: PG acknowledges support by Marie Skłodowska-Curie Actions ITN "SynCrop" (grant agreement No 764591). EvPK and BT acknowledge funding from the Netherlands Organisation for Scientific Research (grant No ALWTF.2015.4). We thank SURFsara for the HPC resources through access to the Lisa Compute Cluster.
DOI: 10.5522/04/14102798
title: Simulating Focused Ultrasound Transducers using Discrete Sources on Regular Cartesian Grids

description: This data was collected in order to validate models of curved sources on cartesian grids. A single element spherically focusing ultrasound transducer (H101 at 1.1 MHz, Sonic Concepts) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under quasi continuous wave and short burst conditions. These measurements include planar scans in the prefocal region for the two driving regimes, and axial scans at the same drive level for both drive regimes. There are additional axial scans at one further higher drive level (very weakly nonlinear) for each of the driving regimes which were acquired for comparison with the model with scaled input source amplitude. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducers mounted in a fixed xyz position with automated tilt, rotate adjustment. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 6 datasets contained in one file, the corresponding figure or table in the paper is given in brackets: 1: Planar scan with 45 cycle burst (qCW) at z = 42.5 mm, linear field 2: Axial scan 45 cycle burst (qCW), linear field (conditions as in 1), Fig 8, 9. 3: Axial scan 45 cycle burst (qCW), weakly nonlinear field, Fig 8, 9. 4: Planar scan with 4 cycle burst at z = 42.5 mm, linear field 5: Axial scan 4 cycle burst, linear field (conditions as in 4), Fig 10, 11. 6. Axial scan 4 cycle burst, weakly nonlinear field, Fig 10, 11.<br>
DOI: 10.5522/04/14102798.v2
title: Simulating Focused Ultrasound Transducers using Discrete Sources on Regular Cartesian Grids

description: This data was collected in order to validate models of curved sources on cartesian grids. A single element spherically focusing ultrasound transducer (H101 at 1.1 MHz, Sonic Concepts) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under quasi continuous wave and short burst conditions. These measurements include planar scans in the prefocal region for the two driving regimes, and axial scans at the same drive level for both drive regimes. There are additional axial scans at one further higher drive level (very weakly nonlinear) for each of the driving regimes which were acquired for comparison with the model with scaled input source amplitude. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducers mounted in a fixed xyz position with automated tilt, rotate adjustment. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 6 datasets contained in one file, the corresponding figure or table in the paper is given in brackets: 1: Planar scan with 45 cycle burst (qCW) at z = 42.5 mm, linear field 2: Axial scan 45 cycle burst (qCW), linear field (conditions as in 1), Fig 8, 9. 3: Axial scan 45 cycle burst (qCW), weakly nonlinear field, Fig 8, 9. 4: Planar scan with 4 cycle burst at z = 42.5 mm, linear field 5: Axial scan 4 cycle burst, linear field (conditions as in 4), Fig 10, 11. 6. Axial scan 4 cycle burst, weakly nonlinear field, Fig 10, 11.<br>
DOI: 10.5522/04/14102798.v1
title: Simulating Focused Ultrasound Transducers using Discrete Sources on Regular Cartesian Grids

description: This data was collected in order to validate models of curved sources on cartesian grids. A single element spherically focusing ultrasound transducer (H101 at 1.1 MHz, Sonic Concepts) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under quasi continuous wave and short burst conditions. These measurements include planar scans in the prefocal region for the two driving regimes, and axial scans at the same drive level for both drive regimes. There are additional axial scans at one further higher drive level (very weakly nonlinear) for each of the driving regimes which were acquired for comparison with the model with scaled input source amplitude. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducers mounted in a fixed xyz position with automated tilt, rotate adjustment. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 6 datasets contained in one file, the corresponding figure or table in the paper is given in brackets: 1: Planar scan with 45 cycle burst (qCW) at z = 42.5 mm, linear field 2: Axial scan 45 cycle burst (qCW), linear field (conditions as in 1), Fig 8, 9. 3: Axial scan 45 cycle burst (qCW), weakly nonlinear field, Fig 8, 9. 4: Planar scan with 4 cycle burst at z = 42.5 mm, linear field 5: Axial scan 4 cycle burst, linear field (conditions as in 4), Fig 10, 11. 6. Axial scan 4 cycle burst, weakly nonlinear field, Fig 10, 11.<br>
DOI: 10.5522/04/14200220
title: Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps

description: This data was collected in order to validate models of ultrasound propagation through skull bone phantoms. A single element spherically focusing ultrasound transducer (PA332 at 1 MHz, Precision Acoustics) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under short burst conditions (3 cycles). These measurements include planar scans in the prefocal region in free field for characterisation of the source, and planar scans further from the source after propagation through 3 different bone phantoms: a parametric araldite resin phantom, a mesh based skull bone phantom obtained from a T1 weighted MRI scan of the head, cast in araldite and printed in VeroBlack. Medium maps used in simulations, which match the experimental set up are included as a supplementary file, these include speed of sound, attenuation coefficient and density. The .stl file containing the mesh is also included as a supplementary file. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducer was mounted in a fixed xyz position. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 5 datasets contained 5 files, the corresponding figure or table in the paper is given in brackets: 1: Free field XY planar transverse scan at z = 45 mm, corresponds to dataset 2, which was performed in the same measurement session. 2. XY planar transverse scan at z = 58 mm after propagation through a parametric araldite 1302 resin phantom. (Fig 13) 3. Free field XY planar transverse scan at 45 mm, corresponds to datasets 4 and 5, which were performed in the same measurement session. 4. Planar transverse scan at z = 85 mm after propagation through a mesh based skull bone phantom cast in araldite 1302. (Fig 14) 5. Planar transverse scan at z = 85 mm after propagation though a mesh based skull bone phantom printed in VeroBlack. (Fig 14) Supplementary files: 6. *_supplementary_01.h5, h5 file containing fields medium1, medium2 and medium3, which contain grid based medium maps (sound speed, attenuation coefficient at 1 MHz, and density), with coordinates and description, for medium1: parametric resin phantom, medium2: mesh based resin phantom, medium3: mesh based VeroBlack phantom. 7. *_supplementary-02.stl, .stl file containing mesh used to construct the anatomical bone phantom
DOI: 10.5522/04/14200220.v2
title: Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps

description: This data was collected in order to validate models of ultrasound propagation through skull bone phantoms. A single element spherically focusing ultrasound transducer (PA332 at 1 MHz, Precision Acoustics) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under short burst conditions (3 cycles). These measurements include planar scans in the prefocal region in free field for characterisation of the source, and planar scans further from the source after propagation through 3 different bone phantoms: a parametric araldite resin phantom, a mesh based skull bone phantom obtained from a T1 weighted MRI scan of the head, cast in araldite and printed in VeroBlack. Medium maps used in simulations, which match the experimental set up are included as a supplementary file, these include speed of sound, attenuation coefficient and density. The .stl file containing the mesh is also included as a supplementary file. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducer was mounted in a fixed xyz position. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 5 datasets contained 5 files, the corresponding figure or table in the paper is given in brackets: 1: Free field XY planar transverse scan at z = 45 mm, corresponds to dataset 2, which was performed in the same measurement session. 2. XY planar transverse scan at z = 58 mm after propagation through a parametric araldite 1302 resin phantom. (Fig 13) 3. Free field XY planar transverse scan at 45 mm, corresponds to datasets 4 and 5, which were performed in the same measurement session. 4. Planar transverse scan at z = 85 mm after propagation through a mesh based skull bone phantom cast in araldite 1302. (Fig 14) 5. Planar transverse scan at z = 85 mm after propagation though a mesh based skull bone phantom printed in VeroBlack. (Fig 14) Supplementary files: 6. *_supplementary_01.h5, h5 file containing fields medium1, medium2 and medium3, which contain grid based medium maps (sound speed, attenuation coefficient at 1 MHz, and density), with coordinates and description, for medium1: parametric resin phantom, medium2: mesh based resin phantom, medium3: mesh based VeroBlack phantom. 7. *_supplementary-02.stl, .stl file containing mesh used to construct the anatomical bone phantom
DOI: 10.5522/04/14200220.v1
title: Sensitivity of simulated transcranial ultrasound fields to acoustic medium property maps

description: This data was collected in order to validate models of ultrasound propagation through skull bone phantoms. A single element spherically focusing ultrasound transducer (PA332 at 1 MHz, Precision Acoustics) was used to generate an acoustic field. Measurements were performed with a 0.2 mm PVDF needle hydrophone (Precision Acoustics) to characterise the source under short burst conditions (3 cycles). These measurements include planar scans in the prefocal region in free field for characterisation of the source, and planar scans further from the source after propagation through 3 different bone phantoms: a parametric araldite resin phantom, a mesh based skull bone phantom obtained from a T1 weighted MRI scan of the head, cast in araldite and printed in VeroBlack. Medium maps used in simulations, which match the experimental set up are included as a supplementary file, these include speed of sound, attenuation coefficient and density. The .stl file containing the mesh is also included as a supplementary file. All measurements were acquired using an automated scanning tank filled with degassed, deionised water. The transducer was mounted in a fixed xyz position. Hydrophones were mounted on an automated xyz stage, with manual tilt, rotate adjustment. In total this study contains 5 datasets contained 5 files, the corresponding figure or table in the paper is given in brackets: 1: Free field XY planar transverse scan at z = 45 mm, corresponds to dataset 2, which was performed in the same measurement session. 2. XY planar transverse scan at z = 58 mm after propagation through a parametric araldite 1302 resin phantom. (Fig 13) 3. Free field XY planar transverse scan at 45 mm, corresponds to datasets 4 and 5, which were performed in the same measurement session. 4. Planar transverse scan at z = 85 mm after propagation through a mesh based skull bone phantom cast in araldite 1302. (Fig 14) 5. Planar transverse scan at z = 85 mm after propagation though a mesh based skull bone phantom printed in VeroBlack. (Fig 14) Supplementary files: 6. *_supplementary_01.h5, h5 file containing fields medium1, medium2 and medium3, which contain grid based medium maps (sound speed, attenuation coefficient at 1 MHz, and density), with coordinates and description, for medium1: parametric resin phantom, medium2: mesh based resin phantom, medium3: mesh based VeroBlack phantom. 7. *_supplementary-02.stl, .stl file containing mesh used to construct the anatomical bone phantom
DOI: 10.6084/m9.figshare.20000423
title: Untitled Item

description: The datasets contain benchmark datasets and mocked data. <br> The subfolder of benchmark datasets contains MSRCV1, Yale, ORL and Caltech101-7. <br> The subfolder of mocked data contains multi-source geospatial big data (i.e. bus_taxi_poi).
DOI: 10.6084/m9.figshare.20000423.v2
title: Untitled Item

description: The datasets contain benchmark datasets and mocked data. <br> The subfolder of benchmark datasets contains MSRCV1, Yale, ORL and Caltech101-7. <br> The subfolder of mocked data contains multi-source geospatial big data (i.e. bus_taxi_poi).
DOI: 10.6084/m9.figshare.20000423.v1
title: Untitled Item

description: The datasets contain benchmark datasets and mocked data. <br> The subfolder of benchmark datasets contains MSRCV1, Yale, ORL and Caltech101-7. <br> The subfolder of mocked data contains multi-source geospatial big data (i.e. bus_taxi_poi).
DOI: 10.5522/04/19524907
title: Atomic force microscopy data on amyloid disaggregation by Hsp70 disaggregase

description: Data for manuscript preprint on bioRxiv (https://doi.org/10.1101/2021.08.29.458036) and accepted for publication at EMBO Journal (https://doi.org/10.15252/embj.202111041).
DOI: 10.5522/04/19524907.v1
title: Atomic force microscopy data on amyloid disaggregation by Hsp70 disaggregase

description: Data for manuscript preprint on bioRxiv (https://doi.org/10.1101/2021.08.29.458036) and accepted for publication at EMBO Journal (https://doi.org/10.15252/embj.202111041).
DOI: 10.14458/rsu.res.2022.41
title: Exploring Students' Perspectives on Online Learning in English Class: A Case Study of Undergraduate Students from Asian Countries
DOI: 10.14458/rsu.res.2022.42
title: Expression of vascular endothelial growth factor protein in mRNA-transfected human periodontal ligament cells
DOI: 10.14458/rsu.res.2022.43
title: Factors Influencing the Decision to Choose the Condominium Project near the Sky Train Station of the Non-registered Population in Bangkok
DOI: 10.14458/rsu.res.2022.44
title: Factors Related to Low Salivary Flow in a Group of Thai Diabetes Older Adults
DOI: 10.14458/rsu.res.2022.45
title: Financial Performance of Selected Micro Small and Medium Enterprises: A Case Study of Indonesian Agro-Industry Businesses
DOI: 10.14458/rsu.res.2022.46
title: Fluorescent Intraoral Camera as a New Method to Motivate Oral Hygiene
DOI: 10.14458/rsu.res.2022.48
title: HPLC-RID Sugar Content Analysis of Date Juice and Processed Products from Low Quality Thai Cultivar Date Palm (Phoenix dactylifera cv. KL1)
DOI: 10.14458/rsu.res.2022.49
title: Importance of Inventory Management Knowledge for New Entrepreneur: A Demonstration through Student Performance in Business Game
DOI: 10.6084/m9.figshare.20003989
title: The inflation and Cruzado and Real Plans: an institutionalist interpretation

description: Abstract This paper aims to present both an institutionalist interpretation of inflation and of the result of the Real Plan and the Cruzado Plan from the theory of regulation and the old institutionalism of Veblen. Using the Theory of Regulation we observe how the institutional forms of structure contributed to the persistence of and the end of inflation in Brazil. From the point of view of Veblen's institutionalism we show that the institutional forms have contributed to consolidating what is called the "inflation habit", present in Brazil throughout its history. This "habit" increased in relevance in the 1980's, and derailed the Cruzado Plan. On the other hand, with the new macroeconomic configuration and the Real Plan, the suppression of the habit to adjust prices finally took place, which in turn provided monetary stability.
DOI: 10.6084/m9.figshare.20003989.v1
title: The inflation and Cruzado and Real Plans: an institutionalist interpretation

description: Abstract This paper aims to present both an institutionalist interpretation of inflation and of the result of the Real Plan and the Cruzado Plan from the theory of regulation and the old institutionalism of Veblen. Using the Theory of Regulation we observe how the institutional forms of structure contributed to the persistence of and the end of inflation in Brazil. From the point of view of Veblen's institutionalism we show that the institutional forms have contributed to consolidating what is called the "inflation habit", present in Brazil throughout its history. This "habit" increased in relevance in the 1980's, and derailed the Cruzado Plan. On the other hand, with the new macroeconomic configuration and the Real Plan, the suppression of the habit to adjust prices finally took place, which in turn provided monetary stability.
DOI: 10.14458/rsu.res.2022.50
title: Intralesional Triamcinolone Acetonide Injection and Topical Betamethasone/Calcipotriol Treatment in Nail Psoriasis
DOI: 10.14458/rsu.res.2022.51
title: Investigation of FOXO3a, S253 phosphorylation FoxO3a, and 14-3-3 Expression in Androgenetic alopecia VS Normal
DOI: 10.14458/rsu.res.2022.52
title: Language Learning Strategies, E-Learning Self-Efficacy, and Academic Dishonesty Among International Students at Asia-Pacific International University
DOI: 10.14458/rsu.res.2022.53
title: Legal Measures to Resolve Vote Buying in Election of Municipality Council Members and Mayor of the Municipality in Phatthalung Province Problems
DOI: 10.14458/rsu.res.2022.54
title: Macrophage identification in the different areas of the hair follicle of Androgenetic Alopecia
DOI: 10.14458/rsu.res.2022.55
title: Measures Affecting Energy Conservation of Designated Factory in Thailand
DOI: 10.14458/rsu.res.2022.56
title: Multimodal Feedback: A Real Challenge in EFL Writing Pedagogy
DOI: 10.14458/rsu.res.2022.57
title: Overall Preparedness of Higher Education Institution to Offer International Programs: An Evaluation
DOI: 10.14458/rsu.res.2022.58
title: Parental satisfaction of esthetic in SDF followed by RMGI restoration compared to RMGI restoration
DOI: 10.14458/rsu.res.2022.59
title: Physicochemical Parameters and Chemical Compositions of Essential Oils from Marjoram and Sweet Basil Cultivated in Northern Thailand
DOI: 10.14458/rsu.res.2022.60
title: Potential Acceptance of Upcoming Thai Retail CBDC (Central Bank Digital Currency) in Thailand
DOI: 10.6084/m9.figshare.20003992
title: The American financial crisis and non-conventional monetary policies

description: Abstract The paper aims to analyze the wide range of unconventional monetary policies adopted in the U.S. since the 2007-2008 financial crises, focusing on conceptual aspects, the implementation of different programs and measures adopted by FED, and their effectiveness. It is argued that the use of credit and quasi-debt policies had significant effects on the financial conditions and on a set of macroeconomic variables in the US, such as output and employment. This result raises questions about the effectiveness of conventional monetary policy and the forward guidance, both of which were key elements in the New Macroeconomics Consensus view that preceded the 2007-2008 financial crisis.
DOI: 10.6084/m9.figshare.20003992.v1
title: The American financial crisis and non-conventional monetary policies

description: Abstract The paper aims to analyze the wide range of unconventional monetary policies adopted in the U.S. since the 2007-2008 financial crises, focusing on conceptual aspects, the implementation of different programs and measures adopted by FED, and their effectiveness. It is argued that the use of credit and quasi-debt policies had significant effects on the financial conditions and on a set of macroeconomic variables in the US, such as output and employment. This result raises questions about the effectiveness of conventional monetary policy and the forward guidance, both of which were key elements in the New Macroeconomics Consensus view that preceded the 2007-2008 financial crisis.