cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12901382.v6
title: A meta-analysis of the ecological and economic outcomes of mangrove restoration

description: This dataset is used to conduct a comprehensive meta-analysis of the peer-reviewed literature on mangrove restoration to estimate its outcomes across different functions and economic costs/benefits. The peer-reviewed literature were firstly searched through ISI Web of Science Core Collection and Elsevier Scopus using generic wording for restoration impact without restriction on publication year on 22 December 2019. The second search was conducted using a refined keywords of 26 identified ecosystem function categories on 30 June 2020. In total, we identified 395 cases from 188 quantitative studies focusing on the outcomes of mangrove restoration on different functions, as well as economic costs and benefits of mangrove restoration. 962 observations from 88 studies covered 21 types of functions met the criteria to perform meta-analyses. We also extracted 30 cases spanning ten types of economic benefits and 68 cases spanning six types of restoration costs to conduct benefit-cost analysis.
DOI: 10.6084/m9.figshare.14789811.v1
title: Minimum dataset for" Different cell imaging methods did not significantly improve immune cell image classification performance"

description: Minimum dataset for" Different cell imaging methods did not significantly improve immune cell image classification performance"<br>88 images (4 channels (Alx594-conjugated anti-CD19 antibody fluorescence, BF, Ph, DIC) × 22 focal positions) were extracted from Experiment 1, and 91 images (3 channels (BF, Ph, DIC) × 30 time step + one Alx594-conjugated anti-CD19 antibody fluorescence) from Experiment 2. Since the images were extracted by dish, a total of 537 images (3 dish × 88 images for Experiment 1 and 3 dish × 91 images for Experiment 2). This is about 0.6% of the total number of images.<br><br>File name in Experiment 1 is 180402_ils_lmpp-probmix_dish[dish number]_xy001c[channel]z[focan position].tif<br>File name in Experiment 2 is 180411_ils_lmpp-probmix_dish[dish number]_xy001c[channel]t[time step].tif<br>channel: '01':'Alx594-conjugated anti-CD19 antibody fluorescence', '02':'BF', '03':'Ph', '04':'DIC'
DOI: 10.6084/m9.figshare.25902547.v1
title: Supplementary Material for: Structural and functional effects of C5aR1 antagonism in a rat model of neonatal hypoxic-ischemic encephalopathy

description: Abstract 
Introduction
The complement response activates upon reperfusion in neonatal hypoxic-ischemic encephalopathy (HIE) and contributes to excessive neuroinflammation and worse outcomes. C5a is a powerful anaphylatoxin central to each of the complement pathways, and its engagement with C5aR1 is directly tied to brain injury and neuronal death. Reasoning C5aR1 antagonism can decrease excessive neuroinflammation and thereby improve neurological and functional outcomes, we tested this hypothesis in a rat model of HIE with PMX205, a small molecule that inhibits C5a-C5aR1 interaction.
Methods 
Term-equivalent pups (P10-12) were subjected to mild-moderate HIE by Vannucci’s method and treated with PMX205. We compared motor and cognitive outcomes with two behavioral tests each [food-handling and accelerod; novel object recognition (NOR) and open field] to improve the accuracy of our conclusions. 
Results 
Improvements were observed in fine motor function, balance and exploratory behaviors, but little to no improvement in recognition memory and gross motor function. Lesion area and histological assessments showed robust cortical neuroprotection from treatment but persistent injury to the CA1 region of the hippocampus. Better structural and functional outcomes were seen with 1 day of treatment, suggesting C5aR1 antagonism beyond the latent injury phase may impair recovery. In a dose-response experiment, cerebral area loss from injury was improved only in female rats, suggesting underlying sexual dimorphisms in the complement response.
Conclusion
These results demonstrate proof-of-concept for targeting C5aR1 signaling in neonatal HIE with PMX205 and underscore the role of sex in hypoxic-ischemic injury.
DOI: 10.6084/m9.figshare.28740341.v1
title: Domain-specific corpora for Word2vec model training - materials science, chemistry, and physics

description: The project repository contains the materials science, chemistry, and physics-based domain corpora curated for the training purposes of the Word2vec model. All corpora were generated using the full-length manuscripts, as provided in the "Semantic Scholar Open Research Corpus" (S2ORC) database, and tagged by the corresponding research field tag – chemistry, physics, and materials science. Materials science (<i>corpus-matsci980k</i>), chemistry (<i>corpus-chem980k</i>), and physics (<i>corpus-phys900k</i>) corpora contain roughly 3.6 million tokens, with approximately 900k unique terms, while the mixed corpus (<i>corpus-mixed1800k</i>), generated as a mixture of documents in the following percentage, chemistry:matsci:physics = 23:32:45, contains about 7.7 million tokens with approximately 1800k unique terms. During the assembly process, the absolute number of articles from the given domain was assumed to be insignificant as long as the total number of generated tokens was aligned across corpora.Using the SciSpaCy tokenizer, each sampled training document was segmented into individual sentences that populated the corpus with one sentence per line of the txt file. Splitting raw text into sentences was followed by splitting each sentence into individual tokens using the ChemDataExtractor tokenizer, with all tokens lower-cased except chemical formulas and units of measurement. Tokens with a minimum count threshold of 5 were removed from the corpus.
DOI: 10.17632/93nj28ghmm
title: Data for: Volatility Timing, Sentiment, and the Short-term Profitability of VIX-based Cross-sectional Trading Strategies

description: Use Stata to run the program. Change the path to the folder where alldata.dta file is saved before running the tablecode.do file.
DOI: 10.6084/m9.figshare.20551311.v1
title: Benchmark dataset

description: Representative samples:

 No.005_MT_x4_whole: mouse lung slice stained with MT (baseline sample)
 No.316_MT_x4_whole: mouse lung slice stained with MT (bleomycin-induced fibrosis sample)
 No.005_SR_x4_whole: mouse lung slice stained with SR (baseline sample)
 No.316_SR_x4_whole: mouse lung slice stained with SR (bleomycin-induced fibrosis sample)
DOI: 10.6084/m9.figshare.27019623.v1
title: Supplementary Table 2 from Coral responses to a catastrophic marine heatwave are decoupled from changes in total coral cover at a continental scale

description: Mean percent cover of each coral category in each cluster, either pre- or post-heatwave, as well as the mean difference between pre- and post-heatwave covers in each cluster
DOI: 10.17632/7n36xfmfj9
title: Inhibition of proteolytic and ATPase activities of the proteasome by the BTK inhibitor CGI-1746

description: Bruton’s tyrosine kinase (BTK) inhibitor, ibrutinib, has been shown to synergize in vitro with proteasome inhibitors (PIs) in reducing the viability of cells derived from B-cell malignancies, but the mechanism is not known. We report here that an off-target effect of ibrutinib causes synergy because not all BTK inhibitors exhibited the synergistic effect, and those that synergized did so even in cells that do not express BTK. The allosteric BTK inhibitor CGI-1746 showed the strongest synergy. Co-treatment of cells with CGI-1746 increased PI-induced accumulation of ubiquitin conjugates, expression of heat shock proteins and NOXA, and decreased a ratio of reduced to oxidized glutathione. CGI-1746, but not other BTK inhibitors inhibited ATPase activity and all three peptidase activities of the 26S proteasomes. The effect demonstrates a conceptually novel mode of proteasome inhibition that may aid the development of more potent proteasome inhibitors.
DOI: 10.6084/m9.figshare.19424699.v2
title: Supplemental File 1.xlsx

description: Whole-genome allelic expression patterns in 749 sweet orange transcriptomes
DOI: 10.6084/m9.figshare.20425518.v1
title: Diabetes Datasets

description: There are two datasets from Chinese diabetes patients.+
DOI: 10.6084/m9.figshare.26950663.v2
title: Ecoregional distributions of the world’s freshwater vertebrate species version 1.0

description: Zipped file containing shapefile and xlsx tables with information on the global distribution of freshwater vertebrate species in freshwater ecoregions. SM1-SM4 are supplementary material from the manuscript.
DOI: 10.6084/m9.figshare.29206564
title: Additional file 9 of Temporally resolved single-cell RNA sequencing reveals protective and pathological responses during herpes simplex virus CNS infection

description: Table S1: GeoMx: Overview of ROI selections and raw count.
DOI: 10.6084/m9.figshare.29206567.v1
title: Additional file 10 of Temporally resolved single-cell RNA sequencing reveals protective and pathological responses during herpes simplex virus CNS infection

description: Table S2: scRNA: Quality control, viral reads and pct. of viral RNA-positive cells.
DOI: 10.6084/m9.figshare.29206570
title: Additional file 11 of Temporally resolved single-cell RNA sequencing reveals protective and pathological responses during herpes simplex virus CNS infection

description: Table S3. Lists of differentially regulated genes, GO terms and DEGs at the cell type level.
DOI: 10.6084/m9.figshare.29206570.v1
title: Additional file 11 of Temporally resolved single-cell RNA sequencing reveals protective and pathological responses during herpes simplex virus CNS infection

description: Table S3. Lists of differentially regulated genes, GO terms and DEGs at the cell type level.
DOI: 10.6084/m9.figshare.6265520.v1
title: Patient15

description: Male Patient with 250 slice of pulmonary embolism CT-Angiography.
DOI: 10.17632/xmmyb9rgjj
title: Long-term changes in spirometry and diffusing capacity in Mexican Hispanics with previous severe COVID-19

description: Background: This longitudinal study (April 2020 - January 2023) investigated lung function (spirometry, pulmonary diffusing capacity) in Mexican Hispanics who experienced severe COVID-19. It focused on how recovery time affects lung function improvements, hypothesizing that patients with a longer recovery between diagnosis and pulmonary testing would show better lung function than those tested earlier.

Methods: At a COVID-19 follow-up clinic in Yucatan, Mexico, lung function and symptoms were assessed in patients recovered from severe COVID-19. We used z-scores and Wilcoxon signed rank tests to analyze lung function changes over time. Lung function was measured twice in 82 patients: at a median of 94 and 362 days after COVID-19 diagnosis. High-resolution computed tomography (HRCT) was conducted in 44 of these 82 subjects, with a median time of 38 days between CT scanning and a pulmonary function test. Z-scores were determined using reference equations for spirometry (doi: 10.1164/rccm.202205-0963OC) and DLCO [Gochicoa-Rangel L. G. et al., (2024). Reference equations for DLNO & DLCO in Mexican Hispanics: Influence of altitude and race. BMJ Open Respir Res, in press as of September 2024].

Seven pulmonary ailments were assessed, identified based on the 2022 ERS/ATS interpretation strategies (doi: 10.1183/13993003.01499-2021): (A) Restrictive spirometry pattern (FEV1/FVC &gt; LLN, FVC &lt; LLN); (B) Airflow obstruction (FEV1/FVC &lt; LLN, FVC &gt; LLN); (C) Mixed disorder (FEV1/FVC &lt; LLN, FVC &lt; LLN); (D) Loss of alveolar-capillary structure with loss of lung volume (DLCO &lt; LLN, VA &lt; LLN, KCO &lt; ULN); (E) Localized loss of lung volume or incomplete lung expansion (DLCO &lt; LLN, VA &lt; LLN, KCO &gt; ULN); (F) Pulmonary vascular abnormality (DLCO &lt; LLN, VA normal); and (G) Alveolar hemorrhage, polycythemia, increased blood flow (left to right shunt, or post-exercise).

Results: Initially, 61% of patients exhibited at least one of seven pulmonary function abnormalities (LLN = –1.645), which decreased to 22% by 390 days post-recovery. Considering day-to-day variability, 68% of patients showed improvement by the final visit, while 30% had unchanged lung function from the initial assessment. Computed tomography (CT) scans revealed ground-glass opacities in 33% of patients. One year after infection, DLCO z-scores accounted for 29% of the variation in HRCT fibrosis scores. No significant correlation was found between recovery length and lung function improvement based on z-scores.

Conclusion: Twenty-Two percent of patients who recovered from severe COVID-19 continued to show at least one lung function abnormality one year after recovery, indicating a prolonged impact of COVID-19 on lung health.

The data is in SPSS (.sav) format. Once the file is open you will find the labels for each parameter under the "VARIABLE VIEW" tab.
DOI: 10.17632/y4jgkwgsyf
title: Method for Vibration Frequencies Inspection of Medium and Small Bridges Using Smartphone-Based Accelerometers

description: This study proposes a bridge structural vibration frequency inspection method based on built-in smartphone accelerometers. The uploaded data consists of the raw acceleration data acquired. The file naming convention is: "Bridge Type & Measurement Point - Mounting Method - Sampling Frequency - Sampling Duration - Acquisition Device". "JZ" represents a simply-supported beam bridge, "GG" represents a rigid-frame bridge. For simply-supported beam bridges, the measurement point is at the mid-span. For the four-span rigid-frame bridge, numbers 1, 2, and 3 denote the mid-span of the second span, the quarter-point of the third span, and the mid-span of the third span, respectively. "GD" indicates fixed mounting, "ZY" indicates free placement. Sampling frequencies are 200 Hz, 100 Hz, and 50 Hz. Files ending with "SJ" contain data collected by smartphones; files ending with "XT" contain data collected by the health monitoring system. This data can be used for investigating the performance parameters of smartphone accelerometers and for research related to structural natural vibration frequencies.
DOI: 10.6084/m9.figshare.11917830.v1
title: ANG_Table_S2_Biochemistry.docx

description: Biochemistry results of blood and urine
DOI: 10.6084/m9.figshare.16895281.v1
title: Supplementary Material for: Pyoderma Gangrenosum and Interleukin Inhibitors: A Semi-Systematic Review

description: <b><i>Background:</i></b> Pyoderma gangrenosum (PG) is a rare ulcerating skin disease associated with multiple comorbidities and increased mortality. In recent decades, newer biologics such as interleukin inhibitors have been used to treat PG; however, the literature is scarce, consisting predominantly of case reports and caseseries. The aim of our review was to evaluate the effectiveness and safety of interleukin inhibitors for the treatment of PG in adults. <b><i>Summary:</i></b> A literature search was conducted using search terms related to PG and interleukin inhibitors in databases such as PubMed, Embase, Scopus, Web of Science, and Cochrane Library. The study eligibility criteria included patients diagnosed with PG, over the age of 18, and treated with an interleukin inhibitor. Our study included 60 papers describing 81 patients fulfilling the eligibility criteria. The treatment with interleukin inhibitors resulted in 70% (95% CI 59–80%) response and 57% (95% CI 45–68%) complete response rates, and few (4%) mild adverse events, hence supporting the off-label use for the treatment of recalcitrant PG in adults. The response and complete response rates were 59% (17/29) and 38% (11/29) for anakinra, 64% (7/11) and 55% (6/11) for canakinumab, and 79% (27/34) and 71% (24/34) for ustekinumab, respectively. Limitations include publication bias that might have overestimated the efficacy as successful cases responding to treatment are more likely to be reported than nonresponding cases. Additionally, the heterogeneity of the treatment groups does not allow conclusions of superiority or inferiority of the different interleukin inhibitors to be drawn. Further studies are needed to investigate the efficacy of the different interleukin inhibitors and to investigate the importance of underlying disease for treatment response.
DOI: 10.6084/m9.figshare.28746416.v1
title: FESEM data and images for S1, S3, S4

description: FESEM EDS data and images for 3 materials which are Carbazole + TPPO and TPA + DPPO
DOI: 10.17632/bn26f4px6y
title: A Bangla Dataset to Detect Racism or Body Shaming from Sentence

description: Body shaming and Racism are very common thing in a society. Here there are more than a thousand Bangla sentences that are used by people to humiliate their haters, friends, family, or nearest one. Moreover, there is also word-based data that is directly used in a sentence. Those were collected from a Facebook post and individual users via a Google form without asking for any personal information so that they can feel free to share the sentences in which they are facing embarrassing situations like body shaming and racism. The sentences were labeled with the terms 'Racism' and 'Body Shaming.' Additionally, there is a list of Bangla stop words that will help to do data preprocessing and cleaning.
DOI: 10.6084/m9.figshare.14671971.v1
title: an2017

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.17632/8bshtfjw97
title: screen

description: data of screen time, dietary patterns and academic achievment in children 9-11 y
DOI: 10.17632/cmvmnnmn4t
title: Endophytic microbiome diversity and functional profiles of Huanglongbing-infected citrus revealed by shotgun metagenomics sequencing data

description: This work reports the endophytic microbiome diversity and functional profiles of Huanglongbing-infected citrus grown in Dak Lak, Vietnam, by shotgun metagenomics sequencing data.
DOI: 10.6084/m9.figshare.24049899.v3
title: Preferred Reporting Items for Systematic review and Meta-analysis protocol (PRISMA-P) checklist and flow diagram.docx

description: Preferred Reporting Items for Systematic review and Meta-analysis protocol (PRISMA-P) checklist and flow diagram
DOI: 10.17632/7pznvxk5tt
title: Cell Reports; Nychyk et al 2021; Figure S6; Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes

description: This experiment was to analyze the impact of dietary macronutrients on gut associated metabolome and adipose tissue gene expression. In total we used 18 different diets and tested these on males of one mouse strain (C57BL/6). This file contains the individual data of metabolites of cecal content, fecal triglycerides and gene expression of epidydimal and subcutaneous adipose tissues of male C57BL/6 mice exposed to one of 4 different diets. Dietary treatments consisted of two different levels of dietary fat (40 and 55% by energy) combined with one level of protein (30% by energy) with either casein (CAS) or whey protein isolate (WPI). Full details of the dietary compositions can be found in the supplementary table 1. Complete meta-data are in the meta-data tab of the file. Means for each diet derived from these individual values are presented in Figure S6B-D (metabolites of cecal content), Figure S6E (fecal triglycerides) and Figure S6F, G (Fasn, Glut4 mRNA).
DOI: 10.6084/m9.figshare.28930445.v2
title: 二次元虛擬偶像與粉絲群體的情感互動研-以初音未來為例

description: 二次元虛擬偶像與粉絲群體的情感互動研以初音未來為例
DOI: 10.6084/m9.figshare.7172399.v1
title: Crassi_NMSG1984.15.1ABC L fibula, L ilium, L femur (pathology on femur) 0.1250

description: [XTekCT]Name=RMS1984.15.1ABCInputSeparator=_OutputSeparator=_InputFolderName=OutputFolderName=RMS1984.15.1ABC_01VoxelsX=964VoxelsY=1400VoxelsZ=1999VoxelSizeX=0.125048026442528VoxelSizeY=0.125048026442528VoxelSizeZ=0.125048026442528OffsetX=-4.93939708166731OffsetY=-14.067903080698OffsetZ=0.0625249546758511SrcToObject=734.088817596436SrcToDetector=1174.091MaskRadius=123.272304373279DetectorPixelsX=2000DetectorPixelsY=2000DetectorPixelSizeX=0.2DetectorPixelSizeY=0.2DetectorOffsetX=0.0DetectorOffsetY=0.0CentreOfRotationTop=0.0752436220645904CentreOfRotationBottom=0.0752436220645904WhiteLevel=60000Scattering=0.0CoefX4=0.0CoefX3=0.0CoefX2=0.25CoefX1=0.75CoefX0=0.0Scale=1.32RegionStartX=0RegionStartY=0RegionPixelsX=2000RegionPixelsY=2000Projections=1080InitialAngle=165.2845AngularStep=0.333311313806723FilterType=0CutOffFrequency=2.5Exponent=1.0Normalisation=1.0InterpolationType=0MedianFilterKernelSize=1Scaling=1000.0OutputUnits=/mUnits=mmAutomaticCentreOfRotation=0AutomaticCentreOfRotationOffsetZ1=0AutomaticCentreOfRotationOffsetZ2=0OutputType=1ImportConversion=1AutoScalingType=2LowPercentile=0.2HighPercentile=99.8CentreOfRotation=0.0752436220645904BeamHardeningLUTFile=Blanking=0OrderFFT=13ScalingMinimum=0ScalingMaximum=500TimeStampFolder=1[CTPro]FilterPreset=1Filter_ThicknessMM=0.000Filter_Material=NoneShuttling=FalseVersion=V3.1.5098.29005 (Date:16 December 2013)Product=Product:[XT Software], SuitBuild:[XT 3.1.9], Description:[] Copyright:[Copyright © 2004-2013 Nikon Metrology NV]FilterMethod=0AutoCOR_NumBands=1CorAutoAccuracy=1SliceSingle_HeightPx=1000SliceSingle_Region={X=0,Y=0,Width=1,Height=1}SliceDualTop_HeightPx=1500SliceDualTop_Region={X=0,Y=0,Width=1,Height=1}SliceDualBottom_HeightPx=500SliceDualBottom_Region={X=0,Y=0,Width=1,Height=1}AngleFile_Use=FalseAngleFile_IgnoreErrors=True[Xrays]XraykV=120XrayuA=130[AutoBeamHardening]Stack=0Slice=0SinogramOffsetX=0SinogramBandSampling=1SliceThreshold=0SliceAreaStartX=250SliceAreaEndX=1750SliceAreaStartY=250SliceAreaEndY=1750<br>
DOI: 10.6084/m9.figshare.14769702.v3
title: Continuous naming

description: This item includes data and analysis code of the continuous naming experiment.<br>The current code estimates only the linear trends of ordinal postion in several analysis, as it set the ordinal position as a continuous variable. However, the ordinal position can also be contrasted with polynomial contrasts. This is annotated in the current version of code. To conduct polynomial contrast, we can simply remove the # in the corresponding lines in the code. <br><br>The doc file is another analysis which set the contrast of ordinal position with contr.polynomial(5). This allows us to estimate the linear, quadratic, cubic parameters from the data
DOI: 10.6084/m9.figshare.24126981.v1
title: matrixobr.dta

description: STATA dta file. Weight matrices for regions of Russia.
DOI: 10.6084/m9.figshare.24305365.v1
title: <b>Estimating building height in China from ALOS AW3D30</b>

description: This study developed a method to estimate building height for all of China based on the Advanced Land Observing Satellite (ALOS) World 3D-30 m (AW3D30) DSM and other ancillary data including the Global Artificial Impervious Area (GAIA) dataset, the NASADEM dataset and the Global Roads Inventory Project (GRIP) dataset. The proposed method enabled us to accurately estimate building height with a special slope correction algorithm, improving the accuracy of building height estimation. The outcome of our procedure is a map of building height for China at a spatial resolution of 30 m. Compared to field-measured building height data and reference building height data from Baidu map, results indicate that the proposed method performed well (root mean square error (RMSE) of 4.26 m and 4.98 m, respectively). The new building height map of China contributes to the improved management of urban areas and further studies of urban environments.Reference: https://doi.org/10.1016/j.isprsjprs.2022.01.022.