cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14866371
title: IODP Expedition 372B/375 Natural gamma radiation

description: Natural gamma radiation (NGR) data in the ~0.1 to 3.0 MeV range were measured using eight custom-designed sodium iodide (thallium) [NaI(Tl)] detectors arranged along the core measurement axis at 20 cm intervals. The NGR system uses layers of passive shielding (lead) and active shielding (plastic scintillators and coincidence electronics) to reduce the cosmic-ray signal for low-count analysis of sediment core sections and to obtain the maximum signal-to-noise ratio. Data are reported on a total counts per second basis and the raw spectral files are available as compressed files for later analysis.
DOI: 10.15468/t7827g
title: Out of Sight out of Mind - Camera Traps to uncover the small mammal community of Denmark

description: Out of Sight out of mind – camera traps to uncover the small mammal community of Denmark reveals the data from an extensive camera trap study. The study aimed at testing a novel, non-invasive, low-cost method of monitoring small mammals. During 2021-2024 a total of 202 camera traps were deployed in 13 different study areas throughout Denmark. The study used novel camera trapping techniques specifically designed for capturing small mammals (&lt; 2 kg). Cameras were placed inside boxes that were modified from the original Mostela camera trap box designed by Dutch researchers (Mos & Hofmeester 2020). A cut-through PWC drainpipe functions as a tracking tunnel allowing the animals to enter the box and be captured by the camera. 
All camera traps used were Cuddeback G-5048, using a xenon flash and set to take photos as fast as possible when triggered and re-triggered. Cameras were set to continuously sample throughout the deployment period. 
The resultant dataset consists of more and 150000 photos annotated to species level. Annotation was done manually in the open-access software Wild.ID v.1.0.2 (San Diego Supercomputer Center & Wildlife Insights, 2019). The dataset presented here has been cleaned of blanks and photos taken during setup and pickup of cameras.
DOI: 10.15468/dl.gj9pqr
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna filicaulis Hepper"
 ]
}

 The dataset includes 473 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000343-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/pakdnp
title: Camera Surveys of the Subtidal Flora of Nova Scotia and Southwest New Brunswick 2022-2023

description: To assess the current distribution of kelp beds and other macroalgae in Nova Scotia and Southwest New Brunswick, subtidal drop camera surveys were performed from 2022-2023 at 140 sites. For each site, a GoPro HERO 10 camera was towed along a deep (7-12m) and shallow (3-5m) depth contour until 20 images were acquired per depth. Where possible, species were identified from photos, with particular care given to kelps (defined here as orders Laminariales and Tilopteridales) and fucoids (order Fucales). Crust-forming algae was not counted. Percent cover was calculated using a 10x10 point grid overlaid on each image and recording the dominant cover type at each point. The depth (in meters) of each photo after correcting for tide height ranged from ~0.5m to ~12m. Depths were corrected to chart datum (lowest astronomical tide) using tide predictions from the nearest tide station, taken from tides.gc.ca. Sampling was performed between July and October.
DOI: 10.15468/5n3kd7
title: Monitoring botaniky R2 Kriváň-Mýtna 2024

description: V roku 2024 bol vykonaný botanický prieskum na trvalo monitorovaných plochách, vymedzených prvýkrát v roku 2022. Počas tejto návštevy bol na každej lokalite spísaný kompletný zoznam prítomných druhov cievnatých rastlín, ktorým bola priradená odhadnutá pokryvnosť (hojnosť zastúpenia) podľa 9-člennej Braun-Blanquetovej stupnice (Braun - Blanquet 1964). Druhy sú členené do vertikálnych etáží E0: etáž machorostov a lišajníkov, E1: bylinná etáž (zahŕňa aj dreviny do výšky 1 m), E2: krovinná etáž (1-5 m, zahŕňa aj stromy do tejto výšky), E3: stromová etáž (stromy nad 5 m).
Zároveň boli zaznamenané prítomné biotopy podľa katalógu biotopov Slovenska (Šuvada 2023) a spolu s tým boli sledované aj zmeny druhového zloženia, prípadne výmery a kvality prítomných biotopov v porovnaní s predchádzajúcimi rokmi monitoringu. Nomenklatúra je použitá podľa Klíček e květeně ČR (Kaplan et al. 2019), ďalej bola použitá monografia Flóry Slovenska (II. - VI.1 (1966 - 2008). Významné druhy boli hodnotené podľa Červeného zoznamu výtrusných a kvitnúcich rastlín Slovenska (Eliáš et al. 2015). Nepôvodné druhy sú klasifikované podľa oficiálneho zoznamu pre Slovensko z roku 2012 (Medvecká 2012).
DOI: 10.15468/8vtkt8
title: Botanicky prieskum Tizinka Vratna 2024

description: Botanický prieskum bol realizovaný na riešenej lokalite Tižinka, ktorá je určená na stavbu rekreačných chát. Lokality boli sledované aj z dôvodu obnovy a manažmentu biotopu 6510 Nížinné a podhorské kosné lúky. 
Na sledovaných plochách bol vždy vykonaný súpis druhov cievnatých rastlín (predovšetkým druhy dominantné a biotopovo diagnostické) a vyhodnotená vegetácia zaradením do príslušného biotopu podľa Katalógu Biotopov Slovenska (Šuvada 2023). Výskyt významných druhov z pohľadu ochrany prírody (Eliáš 2015) je tiež priložený.
DOI: 10.5519/qd.399r8iby
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (89 records)
DOI: 10.5281/zenodo.14866374
title: IODP Expedition 372B/375 Core orientation

description: Core orientation data were measured downhole during advanced piston corer (APC) coring, either by Minex FlexIT or Icefield MI-5 core orientation tool. These tools measure magnetic strength and orientation, 3-axis accelerometer data, and tool temperature data.
DOI: 10.5281/zenodo.14866375
title: IODP Expedition 372B/375 Core orientation

description: Core orientation data were measured downhole during advanced piston corer (APC) coring, either by Minex FlexIT or Icefield MI-5 core orientation tool. These tools measure magnetic strength and orientation, 3-axis accelerometer data, and tool temperature data.
DOI: 10.5281/zenodo.14866376
title: IODP Expedition 372B/375 Laser height profile (section half)

description: Height profile data were measured on the Section Half Multisensor Logger (SHMSL) by a rangefinding laser and recorded in uncorrected height units in millimeters in CSV files.
DOI: 10.5281/zenodo.14866377
title: IODP Expedition 372B/375 Laser height profile (section half)

description: Height profile data were measured on the Section Half Multisensor Logger (SHMSL) by a rangefinding laser and recorded in uncorrected height units in millimeters in CSV files.
DOI: 10.5281/zenodo.14866378
title: IODP Expedition 372B/375 P-wave velocity bayonet (section)

description: P-wave velocity data were measured on undisturbed section halves using pairs of piezoelectric transducers mounted in bayonets that are inserted into soft sediment along the JRSO-defined y-axis and/or z-axis. Report includes P-wave velocity in y and/or z direction, bayonet separation, traveltime between transducers, and first arrival picks.
DOI: 10.5281/zenodo.14866379
title: IODP Expedition 372B/375 P-wave velocity bayonet (section)

description: P-wave velocity data were measured on undisturbed section halves using pairs of piezoelectric transducers mounted in bayonets that are inserted into soft sediment along the JRSO-defined y-axis and/or z-axis. Report includes P-wave velocity in y and/or z direction, bayonet separation, traveltime between transducers, and first arrival picks.
DOI: 10.15468/jq66kg
title: DFO Quebec Region Ecosystemic bottom trawl survey 1990-2005

description: Fisheries and Oceans Canada Quebec Region (DFO-Qc) conducts a multidisciplinary scientific bottom trawl survey in the estuary and northern Gulf of St. Lawrence (NAFO areas 4RST) every year since 1978. Survey data are collected following a stratified random sampling with a bottom trawl. The main objectives are to examine spatial and temporal changes in the distribution and relative abundance of fish and their assemblages and biological parameters of commercial species. Over the years, this survey has been conducted aboard five vessels: the MV Gadus Atlantica (1978-1994), the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and since 2022 the CCGS John Cabot. The objectives, the protocols, the identification of species as well as the trawl used during the various surveys changed over time. The data are therefore not directly comparable between these surveys. Comparative analyzes were carried between vessels and conversion factors are available for a number of species. Contact the team for more information.
This data constitutes an OBIS version of the data collected from 1990 to 2005 onboard the CCGS Alfred Needler. At each sampling station, a URI shrimp trawl (81'/114') is towed for 25 minutes on the bottom at each sampling station. Physical oceanographic data are also collected at most stations using CTDs attached to the back of the trawl, a rosette and a zooplankton net. The OBIS view of this dataset includes presence and biomass information for fish and invertebrates species at the survey station locations.
Data collected onboard the CCGS Teleost (2004-2005) are also available on Obis.
DOI: 10.15468/mzyp3e
title: DFO Quebec Region Ecosystemic bottom trawl surveys 2004-2022

description: Fisheries and Oceans Canada Quebec Region (DFO-Qc) conducts a multidisciplinary scientific bottom trawl survey in the estuary and northern Gulf of St. Lawrence (NAFO areas 4RST) every year since 1978. Survey data are collected following a stratified random sampling with a bottom trawl. The main objectives are to examine spatial and temporal changes in the distribution and relative abundance of fish and their assemblages and biological parameters of commercial species. Over the years, this survey has been conducted aboard five vessels: the MV Gadus Atlantica (1978-1994), the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost ( 2004-2022) and since 2022 the CCGS John Cabot. The objectives, the protocols, the identification of species as well as the trawl used during the various surveys changed over time. The data are therefore not directly comparable between these surveys. Comparative analyzes were carried between vessels and conversion factors are available for a number of species. Contact the team for more information.
This data constitutes an OBIS version of the data collected from 2004 to 2021 onboard the CCGS Teleost. At each sampling station, a Campelen 1800 shrimp trawl with a 12.7 mm mesh lining in the codend is towed for 15 minutes on the bottom at each sampling station. Physical oceanographic data are also collected at most stations using CTDs attached to the back of the trawl, a rosette and a zooplankton net. The OBIS view of this dataset includes presence and biomass information for fish and invertebrates species at the survey station locations.
Data collected onboard the CCGS Alfred Needler (1990-2005) are also available on Obis.
DOI: 10.15468/6xys6x
title: Abundance and distribution of endemic bird species in Rushebeya Kanyabaha wetland, Rukiga district, SouthWestern Uganda

description: This dataset is about birds endemic in swamps. The birds were sampled in Rushebeya Kanyabaha wetland, Rukiga district, South Western Uganda
DOI: 10.15468/24phum
title: Records of aquatic vascular plants in Topirets river in 2024 (Bucha district, Kyiv oblast, Ukraine)

description: A small river, Topirets flows in the Buchansky district of the Kyiv oblast (Ukraine). The length of this river is 13 kilometers. Several streams flow into Topirets river. Starting from Nemishaieve to the mouth, the river bed is an almost continuous cascade of ponds. In 2024, we collected data on aquatic vascular plants that grew there. Also, this list includes some plants that grew on swamps. Our dataset contains 80 occurrences of 16 species. These data were partially used for the preparation of two conference papers (Olshanskyi et al., 2024; Olshanskyi & Lisovskyi, 2024).
DOI: 10.15468/rmtgys
title: Site selection to protect Endemic birds in South western Uganda

description: The data set contains occurrence records of five papyrus endemic birds sampled from Papyrus wetlands around Lake Bunyonyi, Lake Mutanda, Lake Mulehe, Lake Chahafi, Lake Kayumbu and Maziba dam between June and November 2023
DOI: 10.15468/86n5pu
title: Ground beetles (Coleoptera:Carabidae) of PSU’s Botanical Garden (Perm, Russia)

description: The dataset is based on a comprehensive study of the
invertebrate herpetofauna in the Botanical Garden of Perm State University.
This study was conducted between 2021 and 2024 using pitfall traps at 21
different sampling sites. Ten of these sites were located in greenhouses, and
eleven were located outside. The dataset includes 2,316 records of ground
beetle (Coleoptera: Carabidae) occurrences, representing 66 different species
from 25 genera and approximately 9752 individuals. All of these records have
been georeferenced, and linked to essential metadata such as the date,
altitude, type of habitat, information about the collection method, and the
amount of effort. Research in the botanical garden's vicinity continues, and
the dataset will be expanded with further information.
DOI: 10.5281/zenodo.14866476
title: isoMiGA: Isoform and gene-level counts and TPM in short-read human microglia

description: https://github.com/RajLabMSSM/isoMiGA  


Isoform quantification performed with Salmon on 4 datasets from human microglia. 


Files are in the naming format {cohort}_{quantification}_{reference}.tsv.gz - 4 cohort, 4, quantifications, 2 references = 32 files.


Cohorts:


1. Raj


350 samples from multiple brain regions. Publication PMID: 34992268


Raw data: https://dss.niagads.org/datasets/ng00105/


2. Roussos


192 samples.


Publication PMID: 35931864.


Raw data: https://doi.org/10.7303/syn26207321  https://www.synapse.org/#!Synapse:syn52052829  


3. Gaffney


118 samples.


Raw data: https://ega-archive.org/datasets/EGAD00001005736 


4. ipsc 


IPS-derived human microglia-like cells (iMGLs)


27 samples from 3 stimulation conditions.


Citation: Navarro et al, LRRK2 G2019S variant triggers transcriptional changes in Parkinson’s disease human myeloid cells under pro-inflammatory environment, in preparation


Raw data: Gene Expression Omnibus GSE240907


Quantification types:


transcript_tpm: transcript-level quantification, TPM normalization


transcript_counts: transcript-level quantification, estimated counts


gene_tpm: gene-level quantification, TPM normalization


gene_counts: gene_level quantification, estimated counts


References:


See https://zenodo.org/record/8290956 for details


gencode: all transcripts in GENCODE v38: https://www.gencodegenes.org/human/release_38.html


union: combination of all GENCODE v38 transcripts with 35,879 novel transcripts found in PacBio long-read RNA-seq
DOI: 10.5281/zenodo.8291210
title: isoMiGA: Isoform and gene-level counts and TPM in short-read human microglia

description: https://github.com/RajLabMSSM/isoMiGA  


Isoform quantification performed with Salmon on 4 datasets from human microglia. 


Files are in the naming format {cohort}_{quantification}_{reference}.tsv.gz - 4 cohort, 4, quantifications, 2 references = 32 files.


Cohorts:


1. Raj


350 samples from multiple brain regions. Publication PMID: 34992268


Raw data: https://dss.niagads.org/datasets/ng00105/


2. Roussos


192 samples.


Publication PMID: 35931864.


Raw data: https://doi.org/10.7303/syn26207321  https://www.synapse.org/#!Synapse:syn52052829  


3. Gaffney


118 samples.


Raw data: https://ega-archive.org/datasets/EGAD00001005736 


4. ipsc 


IPS-derived human microglia-like cells (iMGLs)


27 samples from 3 stimulation conditions.


Citation: Navarro et al, LRRK2 G2019S variant triggers transcriptional changes in Parkinson’s disease human myeloid cells under pro-inflammatory environment, in preparation


Raw data: Gene Expression Omnibus GSE240907


Quantification types:


transcript_tpm: transcript-level quantification, TPM normalization


transcript_counts: transcript-level quantification, estimated counts


gene_tpm: gene-level quantification, TPM normalization


gene_counts: gene_level quantification, estimated counts


References:


See https://zenodo.org/record/8290956 for details


gencode: all transcripts in GENCODE v38: https://www.gencodegenes.org/human/release_38.html


union: combination of all GENCODE v38 transcripts with 35,879 novel transcripts found in PacBio long-read RNA-seq
DOI: 10.5281/zenodo.8291211
title: isoMiGA: Isoform and gene-level counts and TPM in short-read human microglia

description: https://github.com/RajLabMSSM/isoMiGA  


Isoform quantification performed with Salmon on 4 datasets from human microglia. 


Files are in the naming format {cohort}_{quantification}_{reference}.tsv.gz - 4 cohort, 4, quantifications, 2 references = 32 files.


Cohorts:


1. Raj


350 samples from multiple brain regions. Publication PMID: 34992268


Raw data: https://dss.niagads.org/datasets/ng00105/


2. Roussos


192 samples.


Publication PMID: 35931864.


Raw data: https://doi.org/10.7303/syn26207321  https://www.synapse.org/#!Synapse:syn52052829  


3. Gaffney


118 samples.


Raw data: https://ega-archive.org/datasets/EGAD00001005736 


4. ipsc 


IPS-derived human microglia-like cells (iMGLs)


27 samples from 3 stimulation conditions.


Citation: Navarro et al, LRRK2 G2019S variant triggers transcriptional changes in Parkinson’s disease human myeloid cells under pro-inflammatory environment, in preparation


Raw data: Gene Expression Omnibus GSE240907


Quantification types:


transcript_tpm: transcript-level quantification, TPM normalization


transcript_counts: transcript-level quantification, estimated counts


gene_tpm: gene-level quantification, TPM normalization


gene_counts: gene_level quantification, estimated counts


References:


See https://zenodo.org/record/8290956 for details


gencode: all transcripts in GENCODE v38: https://www.gencodegenes.org/human/release_38.html


union: combination of all GENCODE v38 transcripts with 35,879 novel transcripts found in PacBio long-read RNA-seq
DOI: 10.15468/dl.7jebrp
title: Occurrence Download

description: A dataset containing 38163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico, Brazil, Colombia, Bolivia (Plurinational State of))",
 "Geometry POLYGON((-173.274 -62.37058,-21.4755 -62.37058,-21.4755 71.73338,-173.274 71.73338,-173.274 -62.37058))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 38163 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000345-250213122211068/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/adsarg
title: Nagoya-SP

description: Spider specimens deposited at the Nagoya Biodiversity Center (NBC).
DOI: 10.15468/f2rfsa
title: Amphibian and reptile specimens of Bihoro Museum

description: Amphibian and reptile specimens deposited in Bihoro Museum
DOI: 10.15468/jp9brf
title: Lichen collection of Sugadaira Research Station, Mountain Science Center, University of Tsukuba

description: Lichen specimens deposited at Sugadaira Research Station, Mountain Science Center, University of Tsukuba
DOI: 10.15468/86k6x3
title: Lepidoptera Moths Specimens of Yamaguchi prefectural Yamaguchi Museum

description: Lepidoptera Moths Specimens deposited at the Department of Animal, Yamaguchi prefectural Yamaguchi Museum
DOI: 10.15468/wn3nr6
title: Fossil collection of Hokkaido Museum

description: Fossil specimens deposited in Hokkaido Museum
DOI: 10.15468/zk55bz
title: Reptile Collection of Osaka Museum of Natural History

description: Reptile specimens deposited at the laboratory of Zoology, Osaka Museum of Natural History
DOI: 10.15468/8wzm4q
title: Mammal specimens of Bihoro Museum

description: Mammal specimens deposited in Bihoro Museum
DOI: 10.15468/xp9ycr
title: The Keiichi Omoto Butterffly Collection, The University Museum, The University of Tokyo (Nymphalidae: Satyrinae)

description: Butterfly specimens collected by Dr. Keiichi Omoto at The University Museum, The University of Tokyo
DOI: 10.15468/haz2a4
title: Toshiaki Tanaka Specimens of Saga Prefectural Space and Science Museum

description: Specimen donated by Mr. Toshiaki Tanaka, owned by Saga Prefectural Space and Science Museum
DOI: 10.15468/r3nkrp
title: Myxomycota collection of Sugadaira Research Station, Mountain Science Center, University of Tsukuba

description: Myxomycota specimens deposited at Sugadaira Research Station, Mountain Science Center, University of Tsukuba
DOI: 10.15468/t98hxy
title: Algal Specimens of Coastal Branch of Natural History Museum and Institute, Chiba (CMNH)

description: Algal Specimens deposited at Coastal Branch of Natural History Museum and Institute, Chiba (CMNH)
DOI: 10.15468/9ncc83
title: Fish Specimens of Water Environmental Field Station, Global and Local Environment Co-creation Institute, Ibaraki University

description: Fish specimens deposited at the Water Environmental Field Station (WEFS), Global and Local Environment Co-creation Institute, Ibaraki University
DOI: 10.5281/zenodo.14866385
title: IODP Expedition 372B/375 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.5281/zenodo.14866386
title: IODP Expedition 372B/375 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.
DOI: 10.15468/my4zgr
title: Nagoya-IN

description: Insect specimens deposited at the Nagoya Biodiversity Center (NBC).
DOI: 10.15468/xvmbss
title: Bird Specimens of Botanic Garden, Field Science Center for Northern Biosphere, Hokkaido University

description: Bird Specimens deposited at Museum section, Botanic Garden Field Science Center for Northern Biosphere, Hokkaido University
DOI: 10.15468/3rgk3k
title: Vascular plant collection of Botanic Garden, Field Science Center for Northern Biosphere, Hokkaido University

description: Vascular plant specimens of the herbarium of Botanic Garden, Field Science Center for Northern Biosphere, Hokkaido University
DOI: 10.15468/6xhztv
title: Bryophyte collection of Herbarium of Hiroshima University

description: Bryophyte specimens deposited at the Herbarium of Hiroshima University
DOI: 10.15468/rguhgg
title: Vascular plant collection of The University of Tokyo (Botanical Garden)

description: Vascular plant specimens deposited at the Herbarium of The University of Tokyo
DOI: 10.15468/ugmuje
title: Bird specimens of Bihoro Museum

description: Bird specimens deposited in Bihoro Museum
DOI: 10.15468/q3593g
title: Fungal specimens of Bihoro Museum

description: Fungal specimens deposited in Bihoro Museum
DOI: 10.15468/oowsys
title: Molluscan specimens of Bihoro Museum

description: Molluscan specimens deposited in Bihoro Museum
DOI: 10.15468/br9sxg
title: Insect specimens of Otaru Museum

description: Insect specimens deposited in Otaru Museum