cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48370/ofd/40xu6s
title: Myodes glareolus - 157211, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-07-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/j2ovky
title: Myodes glareolus - 137580, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/bc1gep
title: Myodes glareolus - 73818, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/c4eooa
title: Myodes glareolus - 40058, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-09-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/me8uxf
title: Myodes glareolus - 168180, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 2002-04-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/7w3mgw
title: Myodes glareolus - 147003, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.3553353
title: Appendix E. Species traits and methods employed in their measurement.

description: Species traits and methods employed in their measurement.
DOI: 10.6084/m9.figshare.3553353.v1
title: Appendix E. Species traits and methods employed in their measurement.

description: Species traits and methods employed in their measurement.
DOI: 10.6084/m9.figshare.3553350
title: Appendix F. Frequency distributions for the number of leader setbacks and the total lead stem length lost.

description: Frequency distributions for the number of leader setbacks and the total lead stem length lost.
DOI: 10.6084/m9.figshare.3553350.v1
title: Appendix F. Frequency distributions for the number of leader setbacks and the total lead stem length lost.

description: Frequency distributions for the number of leader setbacks and the total lead stem length lost.
DOI: 10.6084/m9.figshare.3553347
title: Appendix G. Comparisons of lost length and mass from leader setbacks for 1.2 m net shoot length.

description: Comparisons of lost length and mass from leader setbacks for 1.2 m net shoot length.
DOI: 10.6084/m9.figshare.3553347.v1
title: Appendix G. Comparisons of lost length and mass from leader setbacks for 1.2 m net shoot length.

description: Comparisons of lost length and mass from leader setbacks for 1.2 m net shoot length.
DOI: 10.6084/m9.figshare.3553344
title: Appendix H. Results of hierarchical regression modeling to predict shoot leader length loss from plant functional traits.

description: Results of hierarchical regression modeling to predict shoot leader length loss from plant functional traits.
DOI: 10.6084/m9.figshare.3553344.v1
title: Appendix H. Results of hierarchical regression modeling to predict shoot leader length loss from plant functional traits.

description: Results of hierarchical regression modeling to predict shoot leader length loss from plant functional traits.
DOI: 10.6084/m9.figshare.3553341
title: Appendix I. Site by site plots of loss against four key traits.

description: Site by site plots of loss against four key traits.
DOI: 10.6084/m9.figshare.3553341.v1
title: Appendix I. Site by site plots of loss against four key traits.

description: Site by site plots of loss against four key traits.
DOI: 10.6084/m9.figshare.3553320
title: Supplement 1. A Mathematica notebook file with data, results, diagnostic graphs, and more information.

description: File List mathematica.nb (md5: 2ad72e9018fa5278584c70ed36448a59) Description mathematica.nb is a Mathematica notebook file (version 7.0) with, data, results, diagnostic graphs, and more information. A free Mathematica notebook viewer may be downloaded from http://www.wolfram.com/cdf-player/.
DOI: 10.6084/m9.figshare.3553320.v1
title: Supplement 1. A Mathematica notebook file with data, results, diagnostic graphs, and more information.

description: File List mathematica.nb (md5: 2ad72e9018fa5278584c70ed36448a59) Description mathematica.nb is a Mathematica notebook file (version 7.0) with, data, results, diagnostic graphs, and more information. A free Mathematica notebook viewer may be downloaded from http://www.wolfram.com/cdf-player/.
DOI: 10.6084/m9.figshare.3553317
title: Appendix A. Tables showing trait values and performance gradients on traits of Anadara trapezia transplanted to unvegetated sediment and Caulerpa taxifolia.

description: Tables showing trait values and performance gradients on traits of Anadara trapezia transplanted to unvegetated sediment and Caulerpa taxifolia.
DOI: 10.6084/m9.figshare.3553317.v1
title: Appendix A. Tables showing trait values and performance gradients on traits of Anadara trapezia transplanted to unvegetated sediment and Caulerpa taxifolia.

description: Tables showing trait values and performance gradients on traits of Anadara trapezia transplanted to unvegetated sediment and Caulerpa taxifolia.
DOI: 10.6084/m9.figshare.3553314
title: Appendix A. Diagram of hypothesized species interactions in the presence of nonnative bullfrogs and mosquitofish.

description: Diagram of hypothesized species interactions in the presence of nonnative bullfrogs and mosquitofish.
DOI: 10.6084/m9.figshare.3553308
title: Appendix B. Mesocosm establishment methods.

description: Mesocosm establishment methods.
DOI: 10.6084/m9.figshare.3553305
title: Appendix C. Structural equation model (SEM) methods and results.

description: Structural equation model (SEM) methods and results.
DOI: 10.6084/m9.figshare.3553302
title: Appendix D. Images of sublethal injuries caused by mosquitofish in the mesocosm experiment.

description: Images of sublethal injuries caused by mosquitofish in the mesocosm experiment.
DOI: 10.6084/m9.figshare.3553299
title: Appendix E. Table with top occupancy models and associated statistics for each native amphibian species.

description: Table with top occupancy models and associated statistics for each native amphibian species.
DOI: 10.6084/m9.figshare.3553299.v1
title: Appendix E. Table with top occupancy models and associated statistics for each native amphibian species.

description: Table with top occupancy models and associated statistics for each native amphibian species.
DOI: 10.6084/m9.figshare.3553296
title: Appendix A. Methods for field surveys of aquatic species including target host amphibians, alternatives, alternative hosts, and predators.

description: Methods for field surveys of aquatic species including target host amphibians, alternatives, alternative hosts, and predators.
DOI: 10.6084/m9.figshare.3553296.v1
title: Appendix A. Methods for field surveys of aquatic species including target host amphibians, alternatives, alternative hosts, and predators.

description: Methods for field surveys of aquatic species including target host amphibians, alternatives, alternative hosts, and predators.
DOI: 10.6084/m9.figshare.3553293
title: Appendix B. Methods for collection and maintenance of amphibians, fish, and aquatic invertebrates used in laboratory experiments.

description: Methods for collection and maintenance of amphibians, fish, and aquatic invertebrates used in laboratory experiments.
DOI: 10.15468/dl.an2fkh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea afro-orientalis Goldblatt"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053958-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3reumy
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mapania ivorensis (J.Raynal) J.Raynal"
 ]
}

 The dataset includes 53 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053959-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q25c3q
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microula longipes W.T.Wang"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053960-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjntzq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcharis sessilis (Thulin) Schrire"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053961-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnbmm7
title: Occurrence Download

description: A dataset containing 4917020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Spatula clypeata (Linnaeus, 1758))"
 ]
}

 The dataset includes 4917020 records from 1669 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053942-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7925/drs1.ucdlib_38398
title: Sackville Street, Dublin, from O'Connell Bridge, after the bombardment
DOI: 10.7925/drs1.ucdlib_38399
title: Sackville Street, Dublin (Abbey Street corner) after the bombardment
DOI: 10.7925/drs1.ucdlib_38400
title: Sackville Street, Dublin, showing ruins of Hotel Metropole and G.P.O. after bombardment
DOI: 10.7925/drs1.ucdlib_38401
title: Henry Street, Dublin, showing side of G.P.O. after the bombardment
DOI: 10.7925/drs1.ucdlib_38402
title: Interior Coliseum Theatre, Dublin, after bombardment
DOI: 10.7925/drs1.ucdlib_38403
title: Sackville Street, Dublin, showing ruins of D.B.C. restaurant after bombardment
DOI: 10.7925/drs1.ucdlib_38404
title: funeral of the late president Arthur Griffith
DOI: 10.7925/drs1.ucdlib_38405
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38406
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38407
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38408
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38409
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38410
title: Irish rebellion May 1916

description: Credits: Printed by the Daily Sketch for Eason and Sons.
DOI: 10.7925/drs1.ucdlib_38412
title: Irish rebellion May 1916
DOI: 10.7925/drs1.ucdlib_38411
title: Irish rebellion May 1916
DOI: 10.7925/drs1.ucdlib_38413
title: Irish rebellion May 1916
DOI: 10.5281/zenodo.20985
title: Historically Irish Surnames Dataset

description: This dataset provides a list of surnames that are reliably Irish and that can be used for identifying textual references to Irish individuals in the London area and surrounding countryside within striking distance of the capital. This classification of the Irish necessarily includes the Irish-born and their descendants. The dataset has been validated for use on records up to the middle of the nineteenth century, and should only be used in cases in which a few mis-classifications of individuals would not undermine the results of the work, such as large-scale analyses. These data were created through an analysis of the 1841 Census of England and Wales, and validated against the Middlesex Criminal Registers (National Archives HO 26) and the Vagrant Lives Dataset (Crymble, Adam et al. (2014). Vagrant Lives: 14,789 Vagrants Processed by Middlesex County, 1777-1786. Zenodo. 10.5281/zenodo.13103). The sample was derived from the records of the Hundred of Ossulstone, which included much of rural and urban Middlesex, excluding the City of London and Westminster. The analysis was based upon a study of 278,949 adult males. Full details of the methodology for how this dataset was created can be found in the following article, and anyone intending to use this dataset for scholarly research is strongly encouraged to read it so that they understand the strengths and limits of this resource:

    Adam Crymble, 'A Comparative Approach to Identifying the Irish in Long Eighteenth Century London', _Historical Methods: A Journal of Quantitative and Interdisciplinary History_, vol. 48, no. 3 (2015): 141-152.

The data here provided includes all 283 names listed in Appendix I of the above paper, but also an additional 209 spelling variations of those root surnames, for a total of 492 names.
description: Anyone publishing academically or commercially based on research or work conducted with this dataset in whole or in part is asked to credit the author with the following citation and an appropriate URL:

        Adam Crymble, 'Historically Irish Surnames Dataset', _Zenodo_ (2015), DOI: 10.5281/zenodo.20985.
description: {"references": ["Adam Crymble, 'A Comparative Approach to Identifying the Irish in Long Eighteenth Century London', _Historical Methods: A Journal of Quantitative and Interdisciplinary History_, vol. 48, no. 3 (2015): 141-152."]}
DOI: 10.5525/gla.researchdata.200
title: Single-crystal to single-crystal mechanical contraction of metal-organic frameworks through stereoselective post-synthetic bromination.

description: The properties of metal-organic frameworks (MOFs) can be tuned by post-synthetic modification (PSM) to introduce specific functionalities after their synthesis. Typically, PSM is carried out on pendant functional groups or through metal/ligand exchange, preserving the structure of the MOF. We report herein the bromination of integral alkyne units in a pair of Zr4+ and Hf4+ MOFs, which proceeds stereoselectively in a single-crystal to single-crystal manner. The chemical and mechanical changes in the MOFs are ex-tensively characterised, including the crystal structures of the post-synthetically brominated materials, which show a mechanical contraction of up to 3.7% in volume. The combination of stability and chemical reactivity in these MOFs leads to the possibility of tuning mechanical properties by chemical transformation, while also opening up new routes to internal pore functionalization.
DOI: 10.6084/m9.figshare.1404975
title: Bayesian Belief Network Method for Predicting Asphaltene Precipitation in Light Oil Reservoirs
DOI: 10.5281/zenodo.20990
title: Tdwg-Challenge-Rdf: V1.0

description: First release
DOI: 10.5281/zenodo.21060
title: Data Set Number 23072015

description: Additional Data for publication in the Journal of PLOS ONE.
DOI: 10.6078/d19g65
title: The Evolution of Function within the Nudix Superfamily: 46-PDB sequence alignment in FASTA format

description: The Nudix superfamily encompasses over 80,000 protein domains from all three domains of life. These proteins fall into four general functional classes: isopentenyl diphosphate isomerases (IDIs), adenine/guanine mismatch-specific adenine glycosylases (A/G-specific adenine glycosylases), pyrophosphohydrolases, and non-enzymatic activities such as protein/protein interaction and transcriptional regulation. The largest group, pyrophosphohydrolases, encompasses more than 100 distinct hydrolase specificities. To understand the evolution of this vast number of activities, we assembled and analyzed experimental and structural data for 205 Nudix proteins collected from the literature. We corrected erroneous functions or provided more appropriate descriptions for 53 annotations described in the Gene Ontology Annotation database in this family, and propose 275 new experimentally-based annotations. We manually constructed structure-guided sequence alignment of 78 Nudix proteins. Using the structural alignment as a seed, we then made an alignment of 347 “select” Nudix domains, curated from structurally determined, functionally characterized, or phylogenetically important Nudix domains. Based on our review of Nudix pyrophosphohydrolase structures and specificities, we further analyzed a loop region downstream of the Nudix hydrolase motif previously shown to contact the substrate molecule and possess known functional motifs. This loop region provides a potential structural basis for the functional radiation and evolution of substrate specificity within the hydrolase family. Finally, phylogenetic analyses of the 347 select protein domains and of the complete Nudix clan revealed general monophyly with regard to function and a few instances of probable homoplasy.
description: 46-PDB sequence alignment in FASTA format; can be opened by most sequence alignment visualization software such as Jalview (Waterhouse et al. 2009 doi:10.1093/bioinformatics/btp033).
DOI: 10.6078/d1sg6h
title: The Evolution of Function within the Nudix Superfamily: 347-select sequence alignment in FASTA format

description: The Nudix superfamily encompasses over 80,000 protein domains from all three domains of life. These proteins fall into four general functional classes: isopentenyl diphosphate isomerases (IDIs), adenine/guanine mismatch-specific adenine glycosylases (A/G-specific adenine glycosylases), pyrophosphohydrolases, and non-enzymatic activities such as protein/protein interaction and transcriptional regulation. The largest group, pyrophosphohydrolases, encompasses more than 100 distinct hydrolase specificities. To understand the evolution of this vast number of activities, we assembled and analyzed experimental and structural data for 205 Nudix proteins collected from the literature. We corrected erroneous functions or provided more appropriate descriptions for 53 annotations described in the Gene Ontology Annotation database in this family, and propose 275 new experimentally-based annotations. We manually constructed structure-guided sequence alignment of 78 Nudix proteins. Using the structural alignment as a seed, we then made an alignment of 347 “select” Nudix domains, curated from structurally determined, functionally characterized, or phylogenetically important Nudix domains. Based on our review of Nudix pyrophosphohydrolase structures and specificities, we further analyzed a loop region downstream of the Nudix hydrolase motif previously shown to contact the substrate molecule and possess known functional motifs. This loop region provides a potential structural basis for the functional radiation and evolution of substrate specificity within the hydrolase family. Finally, phylogenetic analyses of the 347 select protein domains and of the complete Nudix clan revealed general monophyly with regard to function and a few instances of probable homoplasy.
description: 347-select sequence alignment in FASTA format can be opened by most sequence alignment visualization software such as Jalview (Waterhouse et al. 2009 doi:10.1093/bioinformatics/btp033).
DOI: 10.6078/d1x59s
title: The Evolution of Function within the Nudix Superfamily: 324-core sequence alignment in FASTA format

description: The Nudix superfamily encompasses over 80,000 protein domains from all three domains of life. These proteins fall into four general functional classes: isopentenyl diphosphate isomerases (IDIs), adenine/guanine mismatch-specific adenine glycosylases (A/G-specific adenine glycosylases), pyrophosphohydrolases, and non-enzymatic activities such as protein/protein interaction and transcriptional regulation. The largest group, pyrophosphohydrolases, encompasses more than 100 distinct hydrolase specificities. To understand the evolution of this vast number of activities, we assembled and analyzed experimental and structural data for 205 Nudix proteins collected from the literature. We corrected erroneous functions or provided more appropriate descriptions for 53 annotations described in the Gene Ontology Annotation database in this family, and propose 275 new experimentally-based annotations. We manually constructed structure-guided sequence alignment of 78 Nudix proteins. Using the structural alignment as a seed, we then made an alignment of 347 “select” Nudix domains, curated from structurally determined, functionally characterized, or phylogenetically important Nudix domains. Based on our review of Nudix pyrophosphohydrolase structures and specificities, we further analyzed a loop region downstream of the Nudix hydrolase motif previously shown to contact the substrate molecule and possess known functional motifs. This loop region provides a potential structural basis for the functional radiation and evolution of substrate specificity within the hydrolase family. Finally, phylogenetic analyses of the 347 select protein domains and of the complete Nudix clan revealed general monophyly with regard to function and a few instances of probable homoplasy.
description: 324-core sequence alignment in FASTA format; can be opened by most sequence alignment visualization software such as Jalview (Waterhouse et al. 2009 doi:10.1093/bioinformatics/btp033).
DOI: 10.15468/cgswuv
title: MISE Project Waterford Otter Records, 2011-2015

description: The data set contains records of otter spraints collected during surveys carried out by the MISE Project in Co. Waterford between 2011 and 2015. A small number of other records including sightings of live animals and roadkill are also included.
DOI: 10.15468/payqmv
title: Irish Federation of Sea Anglers Catch Data

description: Details of fish caught during sea angling events organised by the Irish Federation of Sea Anglers and its affiliated clubs.
DOI: 10.15468/360nje
title: IWDG Casual Cetacean Sightings

description: A database of casual sightings of cetaceans submitted to the IWDG by members, general public or researchers.
DOI: 10.6084/m9.figshare.1494685
title: Two new sesquiterpene lactones from the fruits of <i>Illicium jiadifengpi</i>
DOI: 10.15468/sfcjtp
title: IWDG Constant Effort Cetacean Sighting Scheme

description: A dataset of cetacean sightings from the Constant Effort Sighting Scheme operated by IWDG.
DOI: 10.5281/zenodo.21144
title: Easement_Cost-Effectiveness: Effects Of Disputes And Easement Violations On The Cost-Effectiveness Of Land Conservation

description: This repository includes the data and files for the example analysis of the following paper published in PeerJ:

Schuster and Arcese (2015) Effects of disputes and easement violations on the cost-effectiveness of land conservation. PeerJ x:xxxx
DOI: 10.15468/1i4cm5
title: IWDG Cetacean Strandings Database

description: A dataset of cetacean strandings, managed by IWDG.
DOI: 10.15468/vfvfcj
title: Lichen.ie Data

description: Records of lichens from different locations around the country.