cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6pdnpw
title: Occurrence Download

description: A dataset containing 14835 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cupressus lusitanica Mill."
 ]
}

 The dataset includes 14835 records from 360 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007291-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9823
title: Pequeros, Captain Francisco "Frank", 1991 June-July

description: Pequeros, Captain Francisco "Frank", 1991 June 5 - July 1. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.ckrjks
title: Occurrence Download

description: A dataset containing 40354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adalia bipunctata (Linnaeus, 1758)"
 ]
}

 The dataset includes 40354 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002467-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-10059
title: Riley, Bob, 1991 May-June

description: Riley, Bob, 1991 May 3 - June 13. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.4nzu5u
title: Occurrence Download

description: A dataset containing 4834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((8.50258 53.76648,8.78721 53.76648,8.78721 53.92262,8.50258 53.92262,8.50258 53.76648))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 2000-2024"
 ]
}

 The dataset includes 4834 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048639-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9692
title: Adams, Dr. Reed (2 of 3), 1980-1991

description: Adams, Dr. Reed (2 of 3), 1980 July - 1991 July 4. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.lpf6ow
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calotriton arnoldi Carranza & Amat, 2005"
 ]
}

 The dataset includes 80 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002467-171020152545675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgfq4q
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((90 0,140 0,140 30,90 30,90 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manis pentadactyla Linnaeus, 1758"
 ]
}

 The dataset includes 320 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000313-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-10146
title: Shigemasa, Thomas, 1985-1991

description: Shigemasa, Thomas, 1985 October 31 - 1991 May 20. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.zhredh
title: Occurrence Download

description: A dataset containing 304453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bryozoa",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 304453 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002467-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-10061
title: Riley, Bob, 1991 May-June

description: Riley, Bob, 1991 May 3 - June 13. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.4qz7x9
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acolutha pulchella (Hampson, 1891)"
 ]
}

 The dataset includes 133 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002657-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0z3am9
title: Occurrence Download

description: A dataset containing 65631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Venezuela (Bolivarian Republic of)",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 65631 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002467-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9829
title: Piersol, Frank, 1991-06-05

description: Piersol, Frank, 1991 June 5. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.25549/independent-c69-10209
title: Brian Sun interviews, 1990 Aug. - 1991 June

description: Brian Sun interviews, 1990 August 3 - 1991 June 21. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.5281/zenodo.14227795
title: CB2 Receptor Signaling Complexes with Beta-Arrestin-2 and Gi Protein

description: CB2 receptor signaling complexes with beta-arrestin-2 and Gi proteinEun Ha Heo and Ravinder Abrol (CSUN)11/27/2024 (Zenodo)

System names as filename prefixes:

CB2R-WT-NoPhosphoC_BARR2_*: wildtype CB2 receptor without phosphorylated C-terminus bound to beta-arrestin-2. CB2R-WT-NoPhosphoC_Gi-Empty_*: wildtype CB2 receptor without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). CB2R-WT-NoPhosphoC_Gi-GDP_*: wildtype CB2 receptor without phosphorylated C-terminus bound to Gi-GDP. CB2R-WT-PhosphoC_BARR2_*: wildtype CB2 receptor with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-Q63R-NoPhosphoC_BARR2_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-Q63R-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP).

CB2R-Q63R-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to Gi-GDP.

CB2R-Q63R-PhosphoC_BARR2_*: CB2 receptor mutant Q63R with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-L133I-NoPhosphoC_BARR2_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-L133I-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). 

CB2R-L133I-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to Gi-GDP. 

CB2R-L133I-PhosphoC_BARR2_*: CB2 receptor L133I mutant with a phosphorylated C-terminus bound to beta-arrestin-2. 

Different file types in following folders when uncompressed:

Folder: PDB files for signaling complex starting and average structures*_md.pdb: Solvated complex structures used as starting geometries.*_avgframe#.pdb: PDB file of average frame given by #.

Folder: MD simulation input files for Amber MD*_md.inpcrd: input coordinates file for MD job*_md.prmtop: parameter and topology file for MD jobStep1_mini_solv.in: mdin file for energy minimization of solvent keeping protein fixed.Step2_equi_solv.in: mdin file for NPT equilibration of solvent while keeping protein fixed.Step3_mini_full.in: mdin file for energy minimization of whole system.Step4_heat_full.in: mdin file for heating system under NPT of whole system.Step5_equi_full.in: mdin file for NPT equilibration of whole system.Step6_prod_full.in: mdin file for 100ns production NPT equilibration of whole system. Step7a_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7b_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7c_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7d_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.

Folder: MD trajectories*_step7_ai_stride100.xtc: Trajectory file in Gromacs xtc format.
DOI: 10.5281/zenodo.14227796
title: CB2 Receptor Signaling Complexes with Beta-Arrestin-2 and Gi Protein

description: CB2 receptor signaling complexes with beta-arrestin-2 and Gi proteinEun Ha Heo and Ravinder Abrol (CSUN)11/27/2024 (Zenodo)

System names as filename prefixes:

CB2R-WT-NoPhosphoC_BARR2_*: wildtype CB2 receptor without phosphorylated C-terminus bound to beta-arrestin-2. CB2R-WT-NoPhosphoC_Gi-Empty_*: wildtype CB2 receptor without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). CB2R-WT-NoPhosphoC_Gi-GDP_*: wildtype CB2 receptor without phosphorylated C-terminus bound to Gi-GDP. CB2R-WT-PhosphoC_BARR2_*: wildtype CB2 receptor with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-Q63R-NoPhosphoC_BARR2_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-Q63R-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP).

CB2R-Q63R-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to Gi-GDP.

CB2R-Q63R-PhosphoC_BARR2_*: CB2 receptor mutant Q63R with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-L133I-NoPhosphoC_BARR2_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-L133I-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). 

CB2R-L133I-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to Gi-GDP. 

CB2R-L133I-PhosphoC_BARR2_*: CB2 receptor L133I mutant with a phosphorylated C-terminus bound to beta-arrestin-2. 

Different file types in following folders when uncompressed:

Folder: PDB files for signaling complex starting and average structures*_md.pdb: Solvated complex structures used as starting geometries.*_avgframe#.pdb: PDB file of average frame given by #.

Folder: MD simulation input files for Amber MD*_md.inpcrd: input coordinates file for MD job*_md.prmtop: parameter and topology file for MD jobStep1_mini_solv.in: mdin file for energy minimization of solvent keeping protein fixed.Step2_equi_solv.in: mdin file for NPT equilibration of solvent while keeping protein fixed.Step3_mini_full.in: mdin file for energy minimization of whole system.Step4_heat_full.in: mdin file for heating system under NPT of whole system.Step5_equi_full.in: mdin file for NPT equilibration of whole system.Step6_prod_full.in: mdin file for 100ns production NPT equilibration of whole system. Step7a_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7b_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7c_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7d_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.

Folder: MD trajectories*_step7_ai_stride10.xtc: Trajectory file in Gromacs xtc format.
DOI: 10.5281/zenodo.14232007
title: CB2 Receptor Signaling Complexes with Beta-Arrestin-2 and Gi Protein

description: CB2 receptor signaling complexes with beta-arrestin-2 and Gi proteinEun Ha Heo and Ravinder Abrol (CSUN)11/27/2024 (Zenodo)

System names as filename prefixes:

CB2R-WT-NoPhosphoC_BARR2_*: wildtype CB2 receptor without phosphorylated C-terminus bound to beta-arrestin-2. CB2R-WT-NoPhosphoC_Gi-Empty_*: wildtype CB2 receptor without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). CB2R-WT-NoPhosphoC_Gi-GDP_*: wildtype CB2 receptor without phosphorylated C-terminus bound to Gi-GDP. CB2R-WT-PhosphoC_BARR2_*: wildtype CB2 receptor with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-Q63R-NoPhosphoC_BARR2_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-Q63R-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP).

CB2R-Q63R-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant Q63R without phosphorylated C-terminus bound to Gi-GDP.

CB2R-Q63R-PhosphoC_BARR2_*: CB2 receptor mutant Q63R with a phosphorylated C-terminus bound to beta-arrestin-2. 

CB2R-L133I-NoPhosphoC_BARR2_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to beta-arrestin-2.

CB2R-L133I-NoPhosphoC_Gi-Empty_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to nucleotide-free Gi protein (no GDP). 

CB2R-L133I-NoPhosphoC_Gi-GDP_*: CB2 receptor mutant L133I without phosphorylated C-terminus bound to Gi-GDP. 

CB2R-L133I-PhosphoC_BARR2_*: CB2 receptor L133I mutant with a phosphorylated C-terminus bound to beta-arrestin-2. 

Different file types in following folders when uncompressed:

Folder: PDB files for signaling complex starting and average structures*_md.pdb: Solvated complex structures used as starting geometries.*_avgframe#.pdb: PDB file of average frame given by #.

Folder: MD simulation input files for Amber MD*_md.inpcrd: input coordinates file for MD job*_md.prmtop: parameter and topology file for MD jobStep1_mini_solv.in: mdin file for energy minimization of solvent keeping protein fixed.Step2_equi_solv.in: mdin file for NPT equilibration of solvent while keeping protein fixed.Step3_mini_full.in: mdin file for energy minimization of whole system.Step4_heat_full.in: mdin file for heating system under NPT of whole system.Step5_equi_full.in: mdin file for NPT equilibration of whole system.Step6_prod_full.in: mdin file for 100ns production NPT equilibration of whole system. Step7a_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7b_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7c_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.Step7d_prod_full.in: mdin file for 500ns production NPT equilibration of whole system.

Folder: MD trajectories*_step7_ai_stride100.xtc: Trajectory file in Gromacs xtc format.
DOI: 10.5281/zenodo.14226843
title: Differential DNA methylation in the benign and cancerous prostate tissue of African American and European American men

description: The data presented here are the summary statistics for the manuscript, "Differential DNA methylation in the benign and cancerous prostate tissue of African American and European American men." The study aims to improve our understanding of prostate cancer disparities between African American and European American men by comparing the DNA methylation features that distinguish tumor and paired, histologically benign tissue from a sample of African American and European American prostate cancer patients. The summary statistics presented here represent the results of a differential methylation analyses comparing tumor and benign tissue in each ancestry group as well as the results of an analysis of differential methylation by ancestry group within each tissue.  

The files included are: 

AA_TumorvBenign_Dummy.zip which contains the results of the association analysis between tumor vs benign (benign as the default) tissue status and individual CpG sites in African Americans based on a model that accounts for the paired nature of samples using a series of dummy variables for individual. 

AA_TumorvBenign_MixedModel.zip which which contains the results of the association analysis between tumor vs benign (benign as the default) tissue status and individual CpG sites in African Americans based on a model that accounts for the paired nature of samples using a linear mixed model that included patient as a random effect. 

EA_TumorvBenign_Dummy.zip which contains the results of the association analysis between tumor vs benign (benign as the default) tissue status and individual CpG sites in European Americans based on a model that accounts for the paired nature of samples using a series of dummy variables for individual. 

EA_TumorvBenign_MixedModel.zip which which contains the results of the association analysis between tumor vs benign (benign as the default) tissue status and individual CpG sites in European Americans based on a model that accounts for the paired nature of samples using a linear mixed model that included patient as a random effect. 

Benign_AncestryCompare_Summary.zip which contains the results of an association analysis between ancestry designation (African American vs European American with African American as the baseline) and individual CpG sites in benign tissue. 

Tumor_AncestryCompare_Summary.zip which contains the results of an association analysis between ancestry designation (African American vs European American with African American as the baseline) and individual CpG sites in tumore tissue.