cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25908046.v1
title: Supplementary Material for: Physician perceptions of medication prescribing in heart failure: a scoping review.

description: Introduction: The swift uptake of new medications into clinical practice has many benefits, however slow uptake has been seen previously with other guideline-directed medical therapies (GDMT) in heart failure (HF). Sodium glucose co-transporter 2 inhibitors are a novel therapy in HF proven to be efficacious and will have beneficial clinical outcomes if prescribed. Understanding physician perspectives on prescribing GDMT in HF can help target strategies to bridge the gap between guidelines and practice.
 
Methods: The study followed the PRISMA guide for scoping reviews and the JBI Manual for scoping reviews. A search was conducted using EMBASE, Medline and PubMed databases in April 2024. Studies included were those using qualitative methods to assess physician perspectives towards prescribing any HF medication. Common themes were identified through thematic synthesis following the methods from Cochrane Training and using software MAXQDA Analysis Pro.

Results: 708 studies were found in the search, with 23 full studies included. The most pertinent barriers identified were concern for medication adverse effects, unclear role responsibilities between physicians of different specialties, patient comorbidities and unwillingness to alter therapies of stable patients. The most identified enablers included awareness of efficacy, influence from colleagues and the use of multi-media approaches for information dissemination. Perceptions were also found to change over time and vary among prescriber groups. 

Conclusions: Physicians perceive common barriers and enablers of prescribing GDMT in HF, despite differences in prescriber groups and time periods. The identified barriers and enablers may be targeted to improve implementation of GDMT into clinical practice.
DOI: 10.1594/pangaea.116087
title: Total carbon dioxide and total alkalinity at station TT043_28-10
DOI: 10.6084/m9.figshare.22304050.v1
title: Datasets used in the empirical comparison study presented in "Prediction approaches for partly missing multi-omics covariate data: A literature review and an empirical comparison study"

description: These datasets are the preprocessed versions of the multi-omics datasets originally used in the empirical comparison study presented in Hornung & Wright (2019). In the latter paper, survival was considered as the outcome variable, given by the data.frame "targetvar" (first column "status": status indicator, second column "time": survival times). The remaining objects in each Rda file are "clin", "cnv", "mirna", "mutation", and "rna", which contain clinical data, copy number variation data, miRNA data, mutation data, and RNA data, respectively. The data were later used in Hornung et al. (2023) again, where the outcome variable was the presence vs. absence of the TP53 mutation ("1" vs. "0"). This information is provided by the column "TP53" of the mutation data. Note that while predicting this outcome is not contextually meaningful, TP53 mutations have been found to be associated with poor clinical outcomes in cancer patients (Wang & Sun, 2017). In this context, TP53 can be used as a surrogate for a phenotypic outcome. These datasets are intended for testing machine learning or statistical procedures, and may not be useful for biological analysis. <br> References: <br> R. Hornung, F. Ludwigs, J. Hagenberg, and A.-L. Boulesteix. Prediction approaches for partly missing multi-omics covariate data: A literature review and an empirical comparison study. arXiv, arXiv:2302.03991, 2023. <br> R. Hornung, and M. N. Wright. Block Forests: random forests for blocks of clinical and omics covariate data. BMC Bioinformatics, 20:358, 2019. <br> X. Wang, and Q. Sun. TP53 mutations, expression and interaction networks in human cancers. Oncotarget, 8(1):624-643, 2017. <br>
DOI: 10.6084/m9.figshare.6151127.v1
title: LDH differential DEM Rasters

description: Geo-referenced raster image set from BISA LDH location seasons 2016 and 2017. <br>
DOI: 10.6084/m9.figshare.19890313.v5
title: Amphibian color paper data and analysis code

description: Amphibian color dataset and analyses code for R. AmphibianData.csv: Datafile MCCtree.nwk: the maximum clade credibility tree file. output.nex: 1,000 trimmed trees that we extracted from VertLife.com Analysis code.zip: analysis code in R format.
DOI: 10.6084/m9.figshare.25999900.v3
title: Performance_011919.mat

description: Data structure from the performance done on 01/19/19.
DOI: 10.6084/m9.figshare.29153597.v1
title: <b>Bangladeshi Education with ChatGPT</b>

description: This dataset presents survey, interview, and focus group data from 191 students in Sherpur, Bangladesh, collected as part of a study on the use and impact of ChatGPT in education. It includes responses from both higher secondary and higher education learners, focusing on awareness, usage, digital access, perceived benefits, and institutional support.
DOI: 10.6084/m9.figshare.21965681.v1
title: ESM4: from Convergent evolution of quadrupedality in ornithischian dinosaurs was achieved through disparate forelimb muscle mechanics

description: Mean, maximum, and minimum glenohumeral abduction-adduction moment arms for each muscle
DOI: 10.6084/m9.figshare.26346709.v1
title: ALS Orne Estuary ML Labeled data

description: Labeled ALS data on the Orne estuary used to train machine learning models. The .zip file contains 2 files: "150603_5class_1Mpts_train.las" and "predi_rf18_4Mpts_0720_1003.las".The file "150603_5class_1Mpts_train.las" is a labeled dataset that can be used to train machine learning models. It was manually classified by field experts. The labeled are contained in the field "Target" with the following values: 1 for "Water", 2 for "Road", 3 for "Buildings and Trees", 4 for "Grass and Schorre" , 5 for "Sand and Mud".The file "predi_rf18_4Mpts_0720_1003.las" contains the prediction results using a Random Forest classifier with the cLASpy_T software.
DOI: 10.6084/m9.figshare.27018994.v2
title: <b>Data for IDDNMTF</b>

description: We evaluated the IDDNMTF model using various combinations of datasets and found that its performance, as measured by AUC, AUPR, and F1 scores, improved with the inclusion of more data.
DOI: 10.6084/m9.figshare.5128381.v1
title: Supplementary Material for: Appropriateness of Repeating <b><i>Helicobacter pylori</i></b> Culture and Susceptibility Testing Following Failure of Individualized Antibiotic Therapy

description: <b><i>Background:</i></b> Current guidelines recommend direct <i>Helicobacter pylori</i> culture and antibiotic susceptibility testing following 2 failed eradication attempts. If this process is followed and yet subsequent treatment is unsuccessful, it is unclear whether susceptibility testing should be repeated. This is the first study to examine the appropriateness of repeated <i>H. pylori</i> culture and susceptibility testing following failure of individualized treatment. <b><i>Methods:</i></b> Between 2007 and 2014, consecutive patients who underwent at least 2 upper gastrointestinal endoscopies with <i>H. pylori</i> culture and susceptibility testing at our institution following several treatment failures were retrospectively identified. Antibiotic susceptibility was recorded and linked to demographic data. <b><i>Results:</i></b> A total of 68 cultures from 34 patients were included (12 (35.3%) men, 41.4 ± 16.6 years), and 20 (58.8%) cultures had a different antibiotic susceptibility profile on repeat testing (8 (23.5%) with new susceptibility and 13 (38.2%) with new resistance). Acquired resistance to clarithromycin, levofloxacin and metronidazole was observed in 9 (26.5%), 2 (5.9%) and 10 (29.4%) cultures, respectively. Subjects with resistance to ≤1 antibiotic at baseline were more likely to develop resistance to at least 1 antibiotic on subsequent culture, compared to subjects with resistance to ≥2 antibiotics at baseline (13 (100%) vs. 5 (23.8%), p &lt; 0.01). <b><i>Conclusion:</i></b> Repeating <i>H. pylori</i> culture and susceptibility testing usually yields new antimicrobial susceptibility data. However, the clinical usefulness of this approach remains unclear.
DOI: 10.17632/v92s8zzn42
title: Data for: pH-Dependent Adsorption of α-Amino Acids, Lysine, Glutamic Acid, Serine and Glycine, on TiO2 Nanoparticle Surfaces

description: See text file - description of data set. Here we share the data compiled for the figures in the manuscript entitled 'pH-Dependent Adsorption of a-Amino Acids, Lysine, Glutamic Acid, Serine and Glycine, on TiO2 Nanoparticle Surfacesí. The methodology of the experiments is explained in detail in the manuscript. Methods: Figures are made in OriginPro 2017 64 Bit Software Package. The data here are shared as text files.
DOI: 10.6084/m9.figshare.14906844.v1
title: Table 1. Accessions and cultivars of T. durum and Kamut® wheat examined in the study

description: Accessions and cultivars of T. durum and Kamut® wheat examined in the study
DOI: 10.6084/m9.figshare.20277606.v2
title: Cellular Lifespan Seahorse Bioenergetics Raw Data

description: The current dataset provides Seahorse bioenergetic measures across the entire replicative lifespan of primary human fibroblast cell lines from n=6 healthy male and female donors and n=3 donors with lifespan-altering mitochondrial disease caused by mutations in the SURF1 gene. These datasets can be integrated with other omic measures collected in parallel along the cellular lifespan, including gene expression (RNA sequencing) and DNA methylation (GSE179849).This dataset also includes experimental manipulations with treatments targeting oxidative phosphorylation (OXPHOS) and glycolysis, and glucocorticoid signaling, providing an opportunity to examine the influence of stress and bioenergetics on human aging biology. All processed data can be accessed and browsed at our webtool: https://columbia-picard.shinyapps.io/shinyapp-Lifespan_Study/. A detailed description of the study and associated methods can be found at: https://www.biorxiv.org/content/10.1101/2021.11.12.468448
DOI: 10.6084/m9.figshare.28840754.v2
title: ChinaNewForest

description: data used in manuscript 'Trade-Offs Between Leaf Quality and Quantity Result in a Net Carbon Uptake Advantage for New Forests Over Old Forests in China'.
DOI: 10.17632/z9zfhzk8cr
title: PopClusters

description: Population clusters for sub-Saharan Africa. The population clusters include the following data: 1. id – The IDs are given as a unique number for each cluster 2. Country - Name of the country. 3. Population – This is the population in each cluster obtained from the population dataset (GHSL for Somalia, Sudan and South Sudan and HRSL for the rest of the countries). The population in these clusters are calibrated to 2016 population values 4. NightLight – This value is obtained from the night-time light map and represents the maximum luminance detected in each cluster based on the 2016 stable light product available. 5. ElecPop – The number of people in each cluster who live in areas in which the stable light product detect light sources. 6. Area – The area of each cluster given in square kilometrers. 7. IsUrban – Classifies areas as either urban (2), peri-urban (1) or rural (0). Change log: 24/08-2020 - Clusters published 30/08-2020 - Added reference to the GitHub repository used to generate the clusters
DOI: 10.15468/dl.hwujs6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.6672 18.7728,-16.5468 17.7486,-16.9133 16.7746,-17.0265 15.925,-17.4754 15.299,-17.9607 15.0106,-18.0159 14.6088,-17.2825 13.9103,-17.2971 12.4437,-17.1163 12.0176,-16.8424 11.8396,-16.9887 11.3363,-16.91 11.0108,-16.709 10.8496,-9.0352 10.8496,-9.0352 19.8496,-16.8896 19.8496,-17.0371 19.3335,-16.6672 18.7728))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013080-250525065834625/datasets/export for details.
DOI: 10.17632/96zwfh2v6d
title: Data for: Where has the city choir gone? Loss of the temporal structure of bird dawn choruses in urban areas

description: Suplemmentary material for the manuscript “Where has the city choir gone? Loss of the temporal structure of bird dawn choruses in urban areas” Title: dawn_chorus_diversity. Incidence matrices for the recorded assemblages during dawn choruses from heavily-urbanized areas and peri-urban forest. Species richness was compared through rarefaction an confidence intervals (IC84%) and composition between both studied conditions using the βsim index. Title: dawn choruses networks data (dawn_choruses_network_data.zip). Weighted matrices of song duration (s) for each species (columns) in each 5-min time period (rows), from peri-urban forest and heavily urbanised conditions. Negative values in time are relative to sunrise. The network patterns of dawn choruses were assessed using bipartite network analysis through modularity (QuanBiMo) and nestedness (WNODF) metrics. Null model comparisons were used to control estimate the statistical significance with z-score tests. The code are also provided in the folder. Title: niche overlap matrices (niche_overlap_matrices.zip). Matrices of the average peak, low and high song frequencies (kHz) by each species singing in dawn choruses at each 5-min time period, from studied dawn choruses for each survey site and within choruses. Negative values in time are relative to sunrise. The degree of spectral overlap (Czechanowski index) were calculated in EcoSimR 0.1.0 (http://ecosimr.org) contrasted the observed overlap with 1000 randomly generated assemblages using the algorithm RA3 that reshuffles row values to different categories. The code are provided in each folder. Title: phylogenetic structure of bird assemblges recorded during dawn choruses. Incidence matrices for the studied dawn choruses for each survey site and within choruses to calculate the mean nearest taxon distance (MNTD) using the package picante. Positive values of SES (mntd.obsz &gt; 0 and mntd.obsp &gt;0.95) indicate phylogenetic evenness (i.e., co-occurring species more distantly phylogenetically related than expected by chance), while negative values of SES (mntd.obsz &lt; 0 and mntd.obsp &gt;0.05) phylogenetic clustering. A Strict consensus tree (Newick format) of the bird community based on the 1000 trees obtained from birdtree (Ericson All Species) and de code are also included. Example of dawn chorus at peri-urban forest, corresponding to 5 min after and before sunrise. Example of dawn chorus at heavily-urbanized areas, corresponding to 5 min after and before sunrise.
DOI: 10.6084/m9.figshare.12505823.v1
title: Figshare Item Types

description: A default list of item types available for items created in Figshare. <br>The list also indicates which item types are indexed by Google Scholar, Google Dataset Search, and Google Book Search.<br>
DOI: 10.6084/m9.figshare.1430465.v1
title: data for Corral et al. PLoS ONE 2015

description: data
DOI: 10.6084/m9.figshare.19772860.v1
title: Effects of perfluoroalkyl and polyfluoroalkyl substances (PFAS) on soil structure and function

description: We investigated the effects of PFAS contaminants on soil structure and microbially-driven processes, including soil respiration, litter decomposition, soil aggregation, enzyme and microbial activities, and bacterial abundance.
DOI: 10.6084/m9.figshare.29128553.v1
title: snp位点合并库.xlsx

description: This case-control study examined the association between genetic polymorphisms in NODAL (rs2279253, rs59893901) and ALK7 (rs6734630) with preeclampsia (PE) risk, as well as gene-gene interactions, among 597 Han Chinese women from Hunan Province (199 PE cases and 398 controls).This study identified novel genetic markers and interaction patterns in the placental TGF-β signaling pathway, providing potential insights for PE prediction and personalized prevention strategies.
DOI: 10.17632/ywtn3p22rz
title: RadashevskyPankova-2024 Supplement

description: Supplementary data for Radashevsky, V.I. & Pankova, V.V. Review of Arctic and Pacific Marenzelleria (Annelida: Spionidae), with new records and comments on Spio gorbunovi Averincev, 1990. African Zoology, 2024
DOI: 10.6084/m9.figshare.20468559.v1
title: Speech MRI dataset of repeated counting from 1-5

description: Experiments were performed on a 3T GE Premier scanner using a custom 16 channel airway coil a healthy subject. The subject were scanned in accordance to our institute's review board protocol, and informed consent were obtained from the subject prior to the study. Subjects were scanned while producing repeated counting of numbers (1 to 5) at the subject's natural pace. A gradient echo based variable density spiral sampling with golden angle view ordering was used to sequentially (one after the other) acquire multiple 2D slices in the mid sagittal plane. Relevant sequence parameters were: Field of view (FOV in <em>cm</em><sup>2</sup>) = 20 × 20, flip angle = 5 <em>degrees</em>, TR = 6 <em>ms</em>, spatial resolution (<em>mm</em><sup>2</sup>) = 2.4 × 2.4, slice thickness = 6 <em>mm</em>, number of slices = 10, spiral interleaves required for Nyquist sampling = 27, readout points = 335, readout duration = 1.3 <em>ms</em>, acquisition time per slice = 16.2 <em>s</em>; total scan time = 162 <em>s</em>. The <strong>.mat</strong> files contails the followings: <br> <strong>dcf</strong>: density compensation factor (readout points × spiral arms) <strong>k</strong>: kspace trajectory (readout points × spiral arms) <strong>kdata</strong>: MRI data (readout points × coils × spiral arms × slices)
DOI: 10.6084/m9.figshare.22090697.v5
title: Daymet_forcings_CAMELS

description: Only for use with the macrosheds R package
DOI: 10.6084/m9.figshare.24585597.v2
title: CCSM3 model data

description: Twenty model years of the monthly CCSM3 model data (tropospheric U, V, T, Z, p-vertical velocity and surface trefht, precl, precc) with the form of grids for TP_Veg, TP_Soil, CTL, Asia, and Europe. Tropospheric data have 12 levels (1000 hPa, 925 hPa, 850 hPa, 700 hPa, 600 hPa, 500 hPa, 400 hPa, 300 hPa, 250 hPa, 200 hPa, 150 hPa, and 100 hPa). In the x direction: 128 points, from 0 to 360, with a resolution of 2.8125; and in the y direction: 64 points (-87.8637988392326, -85.0965269883174, -82.3129129478863, -79.5256065726594, -76.7368996803683, -73.9475151539897, -71.1577520115873, -68.3677561083132, -65.5776070108278, -62.7873517989631, -59.9970201084913, -57.2066315276432, -54.4161995260862, -51.6257336749382, -48.8352409662506, -46.0447266311017, -43.2541946653509, -40.4636481781150, -37.6730896290453, -34.8825209937735, -32.0919438817440, -29.3013596217627, -26.5107693252110, -23.7201739335347, -20.9295742544895, -18.1389709902394, -15.3483647594915, -12.5577561152307, -9.76714555919557, -6.97653355394864, -4.18592053318915, -1.39530691081950, 1.39530691081950, 4.18592053318915, 6.97653355394864, 9.76714555919557, 12.5577561152307, 15.3483647594915, 18.1389709902394, 20.9295742544895, 23.7201739335347, 26.5107693252110, 29.3013596217627, 32.0919438817440, 34.8825209937735, 37.6730896290453, 40.4636481781150, 43.2541946653509, 46.0447266311017, 48.8352409662506, 51.6257336749382, 54.4161995260862, 57.2066315276432, 59.9970201084913, 62.7873517989631, 65.5776070108278, 68.3677561083132, 71.1577520115873, 73.9475151539897, 76.7368996803683, 79.5256065726594, 82.3129129478863, 85.0965269883174, 87.8637988392326).
DOI: 10.6084/m9.figshare.20033243.v1
title: GWAS datasets

description: Access to individual level data can be requested from the authors (Shankai Yin, yinshankai@china.com; and Yongyong Shi, shiyongyong@gmail.com). You will need to agree to the terms of the Data Access Agreement (http://galaxy.bio-x.cn/library/list#folders/Ff2db41e1fa331b3e), and send a signed copy to the authours.
DOI: 10.6084/m9.figshare.22704403.v1
title: Comparative transcriptomic analysis of nasopharyngeal swabs from individuals with and without COVID-19

description: This dataset contains the results of a transcriptomic (RNA-seq) analysis of nasopharyngeal swabs collected from 50 individuals with COVID-19 and 13 individuals without COVID-19 based on clinical qPCR testing. COVID-19 positive individuals included 16 outpatients, 16 hospitalized, non-ICU patients, and 18 hospitalized ICU patients. Samples were collected from a clinical cohort in Greater Toronto Area hospitals and outpatient assessment centres between October 2020 and October 2021. Four comparative analyses were performed using DESeq2: all COVID-19 positive individual versus negatives, COVID-19 ICU individuals versus negatives, non-ICU COVID-19 positive individuals versus negatives, and COVID-19 positive outpatients versus negatives. The analysis was performed with DESeq2 v1.30.1 using the Gencode human reference transcriptome v37.<br>
DOI: 10.15468/dl.d3n3nq
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salsola kali L.",
 "Country is Iran (Islamic Republic of)"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013081-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25765971.v1
title: SM_MA Data.xlsx

description: ....
DOI: 10.6084/m9.figshare.28389059.v1
title: the distribution of water bodies

description: the distribution of water bodies
DOI: 10.6084/m9.figshare.7367078.v1
title: Aridity and land use negatively influence a dominant species’ upper critical thermal limits. Dataset for PeerJ paper

description: Dataset used for midel fitting using lme4 to perform a linear mixed effects analysis of the relationship between CT<sub>max</sub> as a response variable against the environmental variables of aridity, LUI (converted to a proportion), soil clay content, exotic plant ground cover, and total native woody cover (Canopy) designated as fixed effects.
DOI: 10.17632/2czn8x6d4x
title: Data for: How do ecological resilience metrics relate to community stability and collapse?

description: These data correspond with analyses for the article "How do ecological resilience metrics relate to community stability and collapse?" Computer code used to analyze these data is available as supplementary material associated with this article. Details concerning data files: EPA_BBS_correct.csv = log-transformed mean body masses for each species recorded each year along each North American Breeding Bird Survey route. Body masses derived from Dunning 2002 CRC Handbook of Bird Body Masses. Discontinuity_BBS_ ... .csv = files with this moniker contain outputs from discontinuity analysis on EPA_BBS_correct.csv bird body mass data. The discontinuity analysis was conducted on BBS route data binned according to US Environmental Protection Agency ecoregions levels 2 - 4 (LII, LIII, LIV). CrossScale_BBS_forModeling_NoScaleTurnJacc_ ... .csv = files with this moniker contain outputs from cross-scale resilience metric calculations derived from the Discontinuity_BBS files for each EPA ecoregion level. They also contain the calculated species turnover and Jaccard Index values.
DOI: 10.17632/67kc75d6xy
title: The fluid/melt partitioning of chlorine, bromine and iodine in felsic magmas and the utility of halogen ratios to track the devolatilization and fluid fluxing of magma reservoirs

description: The individual analysis to characterize our samples is available in Research Data. This Excel format includes for most samples LA-ICP-MS, EPMA, Raman, and SIMS analysis. The data presented in Research Data was used to calculate the averages reported in the tables of the manuscript. Moreover, information about the calculation of Al_ex and Alk_ex is also available.