cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/tsm
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm438

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr11:87994053-87995154 **Name:** mCF124 **Vista Enhancer ID:** mm438 **Nearest craniofacial gene or locus:** NOG **Enhancer Status:** Other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF124metadata.txt from the External Reference section
DOI: 10.25550/v1j
title: microCT - Bone Tissue of C57BL6J mouse at P0

description: Mouse ID: JI221 This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vdm
title: microMRI images of skulls of Myf5Cre * Smad4FF mice at E17.5

description: microMRI images of skulls of Myf5Cre * Smad4FF mice at E17.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/vfc
title: microCT - Bone Tissue of K14Cre;Tgfbr2flfl Mouse at E16.5

description: Mouse ID: JI226 This dataset includes 1 microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vn4
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E13.5

description: Mouse ID: AS332 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vrp
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm439

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr11:88087585-88089577 **Name:** mCF125 **Vista Enhancer ID:** mm439 **Nearest craniofacial gene or locus:** NOG **Enhancer status:** Other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF125metadata.txt from the External Reference section
DOI: 10.25550/vs4
title: Gene expression microarray - mouse SP8 Mutant

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) of SP8 Mutant of mouse embryos at E10.5.
DOI: 10.34725/dvn/g42gsd/3cr1sv
title: 0.Disclaimer.pdf
DOI: 10.34725/dvn/g42gsd/50pghh
title: 2. Sentinel landscape household module.7z

description: CSPro Data Entry Application developed for data entry in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/7fv431
title: 3. Nicaragua_Raw.tab

description: Stata Data file for the raw Nicaragua household data.
DOI: 10.34725/dvn/g42gsd/ka3csw
title: 2. Sentinel landscape household module.7z

description: CSPro Data Entry Application developed for data entry in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/kikjnk
title: SL_NicaHond_Indicators.R

description: Nicaragua- Honduras Household indicators (R scripts)
DOI: 10.34725/dvn/g42gsd/o2rrgh
title: Sentinel landscape household module.7z

description: CSPro Data Entry Application - Nicaragua-Honduras
DOI: 10.34725/dvn/g42gsd/uwsq5p
title: Sentinel landscape household module.7z

description: CSPro Data Entry Application - Nicaragua-Honduras
DOI: 10.34725/dvn/g42gsd/vppka7
title: 4. NH_Household_Ver.csv

description: Cleaned and verified household data that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/wpl7wg
title: 2. Sentinel landscape household module.7z

description: CSPro Data Entry Application developed for data entry in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/zssmzf
title: 1. SL-HH INSTRUMENT ES 20-9-2013.docx

description: This is the household questionnaire that was developed for data collection in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/ytnej6/4jxd6s
title: Generic Codebook.csv

description: Description of variables for the household data.
DOI: 10.34725/dvn/ytnej6/cujfk1
title: 3. WAM_Household_ver.csv

description: Cleaned and verified household data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/hg8k0u
title: 4.WAM_Household_Ver-SPSS-1.tab

description: SPSS data file for verified and cleaned household data.
DOI: 10.34725/dvn/ytnej6/khkood
title: 6. WA_Indicators.Rmd

description: R script used for the calculation of the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/tf00f8
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/woqmm1
title: 3.WAM_Household_Raw-STATA.tab

description: Stata data file for raw household data.
DOI: 10.34725/dvn/ytnej6/xrn5nc
title: 5. Indicators_Variable_labels-1.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/z7pohq
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.25550/tjm
title: microCT - Soft Tissue of an Msx1 Control mouse at E14.5

description: Mouse ID: AH283 This dataset includes microCT scans of the skull of a Msx1 Control mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tmp
title: miRNAs expressed in the 72hpf zebrafish head

description: 110 heads were dissected from 2- and 3-day post fertilization zebrafish embryos. RNA was extracted by trizol and samples were prepped for miRNA-seq using the University of Oregon Illumina GAIIx sequencer. (20ug total RNA ) The sequence read by the Illumina RNA-seq procedure was compared by BLAST analysis against the miRNA database for human and for zebrafish. Only sequences with 100% identity are shown. The 'count' column lists the number of times each sequence was found in this experiment. Treatment: None
DOI: 10.25550/tvt
title: microCT - Soft Tissue of Tgfbr2fl/fl mouse at E14.5

description: Mouse ID: JI316 This dataset includes microCT scans of the skull of a mouse at Tgfbr2fl/fl mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v22
title: Skull vault formation in individual WT AB Fish

description: An individual fish was imaged successively from 12-23 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.25550/vat
title: microCT - Bone Tissue of an Fgfr2fl/fl control mouse at E17.5

description: Mouse ID: ZZ292 This dataset includes microCT scans of the skull of an Fgfr2fl/fl control mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vbj
title: microCT - Soft Tissue of C57BL6J at E17.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vr4
title: Skull vault formation in individual Chi-/+ fish

description: An individual fish was imaged successively from 14-36 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts. The fish was a heterozygous mutant for Chihuahua, and mutation in the col1a1a gene that models human Osteogenesis Imperfecta.
DOI: 10.25550/vx0
title: Micro-CT images of adult mouse skulls, Collaborative Cross CAST x WSB

description: The dataset consists of a set of images for 2 mice with one parent from the CAST strain, and the other from the WSB strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.34725/dvn/g42gsd/0isypw
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/g42gsd/9grtgk
title: NH_Indicators_Codebook.tab

description: Nicaragua- Honduras Household indicators codebook
DOI: 10.34725/dvn/g42gsd/nhyi5b
title: 3. NH_Household_Raw.csv

description: Raw data file from CSPro that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/o3lgad
title: 3. NH_Household_Raw.csv

description: Raw data file from CSPro that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/pt4x3h
title: 3. NH_Household_Raw.csv

description: Raw data file from CSPro that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/s8yf7d
title: 1. SL-HH INSTRUMENT ES 20-9-2013.docx

description: This is the household questionnaire that was developed for data collection in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/u2qmkd
title: 0. Disclaimer.pdf

description: Disclaimer for data use.
DOI: 10.34725/dvn/g42gsd/uoui25
title: 4. NH_Household_Ver.csv

description: Cleaned and verified household data that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/wf5m7e
title: Generic Codebook.csv

description: Description of variables for the household data collected.
DOI: 10.34725/dvn/ytnej6/25r12t
title: WAM_Household_Raw.tab
DOI: 10.34725/dvn/ytnej6/4wob7k
title: 3. WAM_Household_Raw.tab

description: Raw data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/ct5xmk
title: 3.WAM_Household_Raw.tab

description: Excel CSV data file for raw household data.
DOI: 10.34725/dvn/ytnej6/gcimza
title: 3. WAM_Household_ver.tab

description: Cleaned and verified household data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/jgkocv
title: 7.WAM-indicator-guide_29_Aug.pdf

description: Western Amazon Indicator Guide
DOI: 10.34725/dvn/ytnej6/jhdnl6
title: 7.WAM-indicator-guide_29_Aug.pdf

description: Western Amazon Indicator Guide
DOI: 10.34725/dvn/ytnej6/qluhhe
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/tslap2
title: 3.WAM_Household_Raw-STATA.tab

description: Stata data file for raw household data.
DOI: 10.34725/dvn/ytnej6/tyehip
title: 1. SL-HH INSTRUMENT final 30102013SP-JP.docx

description: This is the household questionnaire that was developed for data collection in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/vrffqr
title: 6. WA_Indicators.Rmd

description: R script used for the calculation of the livelihood indicators.
DOI: 10.25550/1-70jp
title: Activity of predicted human neural crest enhancer near Zfhx4 in E13.5 transgenic mouse embryos– Tg(hg38_chr8:76876488-76877962::LacZ).

description: Tg(hg38_chr8:76876488-76877962::LacZ) demonstrates no reproducible enhancer activity at E13.5, with only weak staining in the neural tube.
DOI: 10.25550/tne
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm430

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr1:194615789-194617278 **Name:** mCF116 **Vista Enhancer ID:** mm430 **Nearest craniofacial gene or locus:** IRF6 This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF116metadata.txt from the External Reference section
DOI: 10.25550/tpe
title: Gene expression microarray - mouse E9.5 Neural Epithelium

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Neural Epithelium of mouse embryos at E9.5
DOI: 10.25550/v9g
title: microCT - Bone Tissue of a Msx1+/+ Control mouse at E16.5

description: Mouse ID: AH256 This dataset includes microCT scans of the skull of a Msx1+/+ Control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vga
title: microCT - Soft Tissue of Tgfbr2fl/+ Control mouse at P0

description: This dataset includes 1 microCT scan of the skull of a Tgfbr2fl/+ control mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vgy
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x NOD

description: The dataset consists of a set of images for 11 mice with both parents from the NOD strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vkj
title: microCT - Bone Tissue of Wnt1-Cre;Tgfbr2fl/fl mouse at E16.5

description: Mouse ID: JI311 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl mouse at E16.5 . The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vmt
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x AJ

description: The dataset consists of a set of images for 20 mice with one parent from the C57BL/6 strain and the other from the A/J strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.34725/dvn/g42gsd/9yqvnt
title: 3. Nicaragua_Raw.tab

description: Stata Data file for the raw Nicaragua household data.
DOI: 10.34725/dvn/g42gsd/agsm6o
title: SL-HH INSTRUMENT ES 20-9-2013.docx
DOI: 10.34725/dvn/g42gsd/atgqns
title: 2. Sentinel landscape household module.7z

description: CSPro Data Entry Application developed for data entry in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/ekvqgu
title: Disclaimer.pdf

description: Disclaimer
DOI: 10.34725/dvn/g42gsd/foktue
title: 4. NH_Household_Ver.tab

description: Stata data file for the cleaned and verified household data.
DOI: 10.34725/dvn/g42gsd/hj3ali
title: NH_Household_Ver.tab
DOI: 10.34725/dvn/g42gsd/wllo4g
title: 4. NH_Household_Ver-1.tab

description: Stata data file for the cleaned and verified household data.
DOI: 10.34725/dvn/g42gsd/xhfsnl
title: 3. Honduras_Raw-1.tab

description: Stata Data file for the raw Honduras household data.
DOI: 10.34725/dvn/g42gsd/ykhmnk
title: 5. NH_Computed_Indicators_Data_2016-01-15.tab

description: Calculated livelihood indicators for the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/ytnej6/5ak193
title: WAM_Household_ver.tab
DOI: 10.34725/dvn/ytnej6/ablsau
title: 3. WAM_Household_Raw.tab

description: Raw data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/ianhls
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/lc7cls
title: WAM-indicator-guide_29_Aug.pdf

description: Western Amazon Indicator Guide
DOI: 10.34725/dvn/ytnej6/ob7rzb
title: 3. WAM_Household_Raw.tab

description: Raw data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/pvcmpg
title: 3. WAM_Household_ver.tab

description: Cleaned and verified data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/sqcvxv
title: 5. Indicators_Variable_labels.tab

description: Description of variables that have been generated in the livelihood indicators.
DOI: 10.34725/dvn/ytnej6/v3z2aa
title: 1. SL-HH INSTRUMENT final 30102013SP-JP.docx

description: This is the household questionnaire that was developed for data collection in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/yb1htb
title: 3. WAM_Household_ver.tab

description: Cleaned and verified data that was collected in the Western Amazon SL.
DOI: 10.17030/uclan.data.00000199
title: A survey of upper limb therapy for people after stroke
DOI: 10.25550/1-70j6
title: Activity of predicted mouse neural crest enhancer near Zfhx4 in E13.5 transgenic mouse embryos– Tg(mm10_chr3:5424611-5426017::LacZ).

description: Tg(mm10_chr3:5424611-5426017::LacZ) demonstrates no reproducible enhancer activity at E13.5. Out of 10 transgenic embryos, only 1 displayed strong X-gal staining in neural crest derived tissues.
DOI: 10.25550/v0g
title: Transgenic Mouse Enhancer OPT Assays - mm1097

description: ChIP-seq, RNA-seq and transgenic assays to identify non-coding regulatory elements (enhancers) active during craniofacial development. Follow this [link](http://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&experiment_id=1097&organism_id=2) to see associated data in the VISTA browser. (Note that the VISTA browser data from this link corresponds to E11.5 while the data shown in here if for E14.5)
DOI: 10.25550/v3g
title: microCT - Soft Tissue of Myf5-Cre;Smad4 mouse at E16.5

description: Mouse ID: DH219 This dataset includes microCT scans of the skull of a Myf5-Cre;Smad4 mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v3y
title: microCT - Soft Tissue of a Tgfbr2fl/+ control mouse at E14.5

description: Mouse ID: JI301 This dataset includes microCT scans of the skull of a Tgfbr2fl/+ control mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vem
title: microCT - Soft Tissue of Msx1-- Mice at E16.5

description: This dataset includes microCT scans of the skulls of Msx1-- mice at E16.5. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vnt
title: Gene expression microarray - mouse E10.5 Rathke pouch

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Rathke pouch of mouse embryos at E10.5
DOI: 10.25550/vqr
title: microCT - Soft Tissue of Wnt1-Cre;Tgfbr2flfl;Alk5fl+ Mouse at E16.5

description: Mouse ID: JI220 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2flfl; Alk5fl+ Mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vxg
title: Micro-CT images of adult mouse skulls, Collaborative Cross CAST x PWK

description: The dataset consists of a set of images for 8 mice with one parent from the CAST strain and the other from the PWK strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.34725/dvn/g42gsd/56pgij
title: 7. NH-indicator-guide.pdf

description: NH-indicator-guide
DOI: 10.34725/dvn/g42gsd/au8rvw
title: NH_Household_Ver.tab

description: Validated and verified data file
DOI: 10.34725/dvn/g42gsd/brdnfx
title: 0. Disclaimer.pdf

description: Disclaimer for data use.
DOI: 10.34725/dvn/g42gsd/fsrh4n
title: 4. NH_Household_Ver.tab

description: Stata data file for the cleaned and verified household data.
DOI: 10.34725/dvn/g42gsd/kqlgr8
title: 3. NH_Household_Ver.csv

description: Cleaned and verified household data that was collected in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/mep3td
title: 1. SL-HH INSTRUMENT ES 20-9-2013.docx

description: This is the household questionnaire that was developed for data collection in the Nicaragua-Honduras SL.
DOI: 10.34725/dvn/g42gsd/q2d6re
title: 6. NH_Indicators.Rmd

description: R script used for the calculation of the livelihood indicators.
DOI: 10.34725/dvn/g42gsd/roy5ua
title: NH_Household_Ver.csv
DOI: 10.34725/dvn/g42gsd/z6drox
title: NH_Indicators_Codebook.tab

description: Nicaragua- Honduras Household indicators codebook
DOI: 10.34725/dvn/ytnej6/6u0rng
title: 4. WA_Computed_Indicators_Data_2016-01-15.tab

description: Calculated livelihood indicators for the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/9friwr
title: 3. WAM_Household_Raw.tab

description: Raw data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/dk5ybp
title: 3. WAM_Household_Raw.tab

description: Raw data that was collected in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/fqrh89
title: 2. SL-HH INSTRUMENT.7z

description: CSPro data entry form developed for data entry in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/mcrrex
title: 1. SL-HH INSTRUMENT final 30102013SP-JP.docx

description: This is the household questionnaire that was developed for data collection in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/naux12
title: 1. SL-HH INSTRUMENT final 30102013SP-JP.docx

description: This is the household questionnaire that was developed for data collection in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/oaiotu
title: 3.WAM_Household_Raw.csv

description: Excel CSV data file for raw household data.
DOI: 10.34725/dvn/ytnej6/pvbjcb
title: 2. SL-HH INSTRUMENT.7z

description: CSPro data entry form developed for data entry in the Western Amazon SL.
DOI: 10.34725/dvn/ytnej6/vnwgae
title: 5. WA_Computed_Indicators_Data_2016-01-15.tab

description: Calculated livelihood indicators for the Western Amazon SL.