cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20383/101.0312
title: Dissolved oxygen model data

description: This dataset contains dissolved oxygen data produced by the hydrodynamic-biogeochemical model ELCOM-CAEDYM that was used in Bocaniov et al. (2020) ""High sensitivity of lake hypoxia to air temperatures, winds and nutrient loading: Insights from a 3D lake model", Water Resources Research. The data includes predicted dissolved oxygen concentrations at the bottom of Lake Erie for the various climate change scenarios discussed in the paper.
DOI: 10.20383/102.0346
title: Target Self‐Enhanced Selectivity in Metal‐Specific DNAzymes

description: A DNA library with glycyl–histidine-functionalized tertiary amine moiety modification at the cleavage junction was used for in vitro selection of Zn2+-dependent DNAzyme. Four DNAzymes were isolated and each of these DNAzymes displays different cooperative binding of metal ions. An interesting relationship between the number of metal ions involved in DNAzyme catalysis and selectivity was established, and this study showed that it could be a useful way to develop highly specific metal sensors.
DOI: 10.20383/101.0172
title: Bedload sediment transport and morphologic data in semi-alluvial rivers conditioned by urbanization and stormwater management

description: Watershed urbanization and stormwater management (SWM) alter the hydrologic and geomorphologic processes of rivers. This purpose of this study is to characterize the bedload sediment transport regime of semi-alluvial gravel-bed rivers, and how it is affected by watershed urbanization and common SWM strategies. Data was collected from three rivers in the Greater Toronto Area of Southern Ontario: Ganatsekaigon Creek (City of Pickering), Wilket Creek (City of Toronto), and Morningside Creek (City of Toronto). The grain size distribution at each site was calculated using a Wolman Pebble count with a 200-stone sample size. Bedload transport was monitored over three years using Radio Frequency Identification (RFID) tracer stones, and periodic topographic surveys were conducted. A total of 300 tracers in 3 size classes were seeded in each site in August 2015. Tracer positions were recorded after each major rainfall event during the active field season each year, resulting in a total of 10, 12, and 13 recoveries in Ganatsekaigon Creek , Wilket Creek, and Morningside Creek, respectively. With each recovery, the travel distance of each tracer since its last known position is calculated. Detailed topographic surveys of the channel bed were conducted in the summers of 2016 and 2018 using a total station. Surveys were used to create DEM of Difference (DOD) at each site after a Triangular Irregular Network interpolation.
DOI: 10.15468/dl.6w4zgd
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea salsettensis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017459-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcwza6
title: Occurrence Download

description: A dataset containing 39172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago major, Plantago major, Plantago major, Plantago major, Plantago major)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 39172 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017458-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20383/101.0194
title: Raw data and videos of historical and projected hydrodynamics and water quality in Lake Diefenbaker reservoir under climate change scenarios using the 2D CE-QUAL-W2 model

description: Lake Diefenbaker (LD) is a large, multi-purpose, mesotrophic reservoir in the Canadian Prairies. The 2D hydrodynamics and water quality model, CE-QUAL-W2, is implemented to explore how historical (2001-2010) and predicted future (2041-2050 and 2081-2090) hydrological and meteorological conditions may impact the in-reservoir nutrient and water chemistry characteristics of lake Diefenbaker. The LD model is discretized in 87 horizontal segments starting at Saskatchewan highway 4 at the upstream extending to the Gardiner Dam and the Qu’Appelle Dam at downstream. Vertically, the number of one-meter model layers is variable with a maximum of 60 layers at the deepest point near the Gardiner Dam. The CE-QUAL-W2 model is forced by projected meteorological variables for the 2.6, 4.5 and 8.5 representative concentration pathways (RCPs), and five stochastically generated stream inflow scenarios and catchment nutrient load scenarios. The effects of climate change scenarios are analysed on water temperature, and DO, PO4, organic P, TN, NH4, NO3 and organic N concentrations.
DOI: 10.20383/101.0214
title: SMELT biological model output for the northern Strait of Georgia

description: Modified source code and model output used in the manuscript, "Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model" by Elise Olson, Susan Allen, Vy Do, Michael Dunphy, and Debby Ianson.
DOI: 10.25314/20c155da-4fcb-4a3f-9672-f02f8e2e33be
title: Transport Scaling of Dunes in Shallow Flows

description: Data archive for Bradley, R., and J. G. Venditti, (2019), Transport Scaling of Dune Dimensions in Shallow Flows, Journal of Geophysical Research: Earth Science. Dataset includes Bed Maps (BedMapsXYZ.zip), Manual vs auto measures (Manual_vs_auto_measures.xlsx), Time Series Data (Time_Series_Data.xlsx), Water Surface Profiles (WaterSurfaceProfilesXYZ.zip), and a ReadMe file. This dataset was originally deposited in the Simon Fraser University institutional repository.
DOI: 10.20383/101.0223
title: Nielson et al 2020 Prospective impacts of oil spills Data

description: An excel data set with foliar characteristics of cottonwoods treated with crude oil or dilbit - as analyzed with a mixed model ANOVA for a journal paper in PLOS1
DOI: 10.20383/101.0241
title: Acoustic recordings of North Atlantic right whale upcalls in the Gulf of St. Lawrence

description: The acoustic data were collected between 2015 and 2019 at six stations in the southern Gulf of St. Lawrence using two different deployment configurations. The dataset also includes audio samples from the Gulf of Maine recorded in 2009, which were part of the DCLDE 2013 Challenge dataset (https://soi.st-andrews.ac.uk/static/soi/dclde2013/documents/WorkshopDataset2013.pdf). The acoustic data are supplemented by expert annotations indicating the presence/absence of North Atlantic right whale upcalls. Spectrogram images are also provided. These data have been used to train a deep neural network to detect North Atlantic right whale upcalls, as described in the article "Performance of a Deep Neural Network at Detecting North Atlantic Right Whale Upcalls" by Kirsebom, Frazao, Simard, Roy, Matwin, and Giard (doi:10.1121/10.0001132), which also contains a detailed description of the data. The software developed as part of this work is available on Zenodo (doi:10.5281/zenodo.3736625) under a GPLv3 license. This includes Python scripts for building training and test datasets, computing signal-to-noise ratios, visualizing spectrograms, training the deep neural network, and using the network to analyze continuous audio recordings.
DOI: 10.25314/87c2db11-62a2-47a3-b395-3bbf9fb664f8
title: BC OGRIS Springs Report

description: This is includes the GIS data, shape files and Springs database generated as part of the BC OGRIS Project "GIS-based Approach to Spring Occurrence and Spring Source Areas in Northeast British Columbia" by Ismena Bystron, Dirk Kirste and Diana Allen. Finale report can be found at http://bcogris.ca/projects/complete. This dataset consists of Data Instructions (BCOGRIS_Spring_GIS_data_Instructions.pdf), the BC OGRIS Springs Database (Springsdatabase.xlsx), the BC OGRIS Springs SSA Shapefiles, LOQs, LOBs, and Maps (Spring_SSA_shapefiles.zip), and the BC OGRIS Report (BCOGRIS_Report_2017.pdf). Content type is GIS data. This dataset was originally deposited in the Simon Fraser University institutional repository.
DOI: 10.5281/zenodo.18511253
title: RECONSTRUCTION OF MORAL AND SPIRITUAL CONCEPTS IN THE TRANSLATION OF UZBEK LITERATURE (based on abdulla qodiriy's novel past days)

description: This article explores the challenges and strategies involved in reconstructing moral and spiritual concepts in the translation of Uzbek literature, with a focus on Abdulla Qodiriy’s novel Past Days. The study emphasizes the significance of conveying culturally embedded values, ethical norms, and spiritual dimensions in translated texts. By analyzing selected passages, the paper demonstrates how translators navigate linguistic, cultural, and contextual differences to preserve the author’s intended moral and spiritual meaning. The findings highlight that effective translation requires not only linguistic competence but also deep cultural understanding and sensitivity to the ethical and spiritual nuances of the source text.
DOI: 10.5281/zenodo.18511254
title: RECONSTRUCTION OF MORAL AND SPIRITUAL CONCEPTS IN THE TRANSLATION OF UZBEK LITERATURE (based on abdulla qodiriy's novel past days)

description: This article explores the challenges and strategies involved in reconstructing moral and spiritual concepts in the translation of Uzbek literature, with a focus on Abdulla Qodiriy’s novel Past Days. The study emphasizes the significance of conveying culturally embedded values, ethical norms, and spiritual dimensions in translated texts. By analyzing selected passages, the paper demonstrates how translators navigate linguistic, cultural, and contextual differences to preserve the author’s intended moral and spiritual meaning. The findings highlight that effective translation requires not only linguistic competence but also deep cultural understanding and sensitivity to the ethical and spiritual nuances of the source text.
DOI: 10.15468/dl.y7uyhq
title: Occurrence Download

description: A dataset containing 13862 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mohonk Preserve Vernal Pool Amphibian Breeding Ecology Monitoring from 1931 to Present"
 ]
}

 The dataset includes 13862 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017460-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20383/101.0126
title: Social behaviours in the 5xFAD mouse

description: 5xFAD transgenic and wild-type mice tested in the olfactory habituation/dishabituation test, urine marking test, three-chamber sociability and social novelty test, and free social interaction test. Mice are tested at 3, 6, 9 and 12 months.
DOI: 10.20383/101.0308
title: Model output from "Earth's Long Term Climate Stabilized By Clouds"

description: Model output generated using the National Center for Atmospheric Research (NCAR) Community Climate System Model and Community Earth System Model, showing negative feedback from low clouds has had a major role in stabilizing climate through Earth's history.
DOI: 10.20383/101.0188
title: Spatial data files for "Spatial distribution of agricultural pesticide use and predicted wetland exposure in the Canadian Prairie Pothole Region"

description: Spatial GIS data layers and maps of modeled a) Pesticide Use Density (PUD) and b) Wetland Pesticide Occurrence Index (WPOI) of herbicides, fungicides an insecticides in the agricultural extent of the Canadian Prairie Pothole Region.
DOI: 10.20383/102.0332
title: RNA metabarcoding to assess zooplankton community response to environmental influence in boreal lake experimental enclosures

description: Zooplankton metabarcoding can provide a high-throughput method for characterizing community response to environmental stressors. There are issues, however, with inferring actual response to stressors using DNA metabarcoding as it cannot distinguish alive organisms within bulk samples. Here we used normalized vitality, namely RNA metabarcoding normalized by DNA metabarcoding, to characterize the zooplankton community response to environmental influence. DNA and RNA metabarcoding was also applied in the context of assessing response of the zooplankton community exposed to simulated spills of diluted bitumen (dilbit), with experimental remediation practices of enhanced monitored natural recovery and shoreline cleaner application. Zooplankton samples were collected via pump on days -3 and 11 and 38 days after the simulated dilbit spill. The zooplankton samples were co-extracted for DNA and RNA and were PCR amplified targeting the mitochondrial Cytochrome c Oxidase subunit I gene (CO1) region, with amplicon sequencing following. The dataset includes the demultiplexed sequencing output, the feature table with species-level taxonomic annotation, and the sample metadata. This dataset contains data from enclosures in rock and cobble substrate. Note that a similar study was conducted for wetland habitat enclosures, with different analyses and interpretation being conducted on the data (dataset available at https://doi.org/10.20383/101.0313).
DOI: 10.20383/101.0121
title: Eradication of Contaminant Starch Granules from Synthetic Calculus: A Decontamination Protocol for Ancient Starch Research

description: Dental calculus provides ancient starch research a niche where granules may be adsorbed to minerals, coated, overgrown, entrapped or protected from chemical degradation. While encapsulation offers protection from degradation, it does not shield the sample’s surface from contamination. The most common approach to retrieving microbotanical particles from archaeological calculus has been the direct decalcification of the sample, after a cleaning stage variously consisting of immersion in water, acids, and mechanical dislodgment via gas, sonication, and/or toothbrushes. Little is known about the efficiency of these methods for a complete removal of sediment/soil and unrelated microbotanical matter. In this paper, controlled laboratory experimentation leads to a decontamination protocol to eradicate starch granules that have been adsorbed to artificially created calculus. Several concentrations of acids, bases, and enzymes were tested at intervals to understand their potential to gelatinize and fully destroy starch granules; arriving at a procedure that effectively eradicates modern starch prior to dissolution without damaging the matrix or entrapped starch microremains. This is the first attempt at creating synthetic calculus to understand and systematically test effective decontamination protocols for ancient starch research. We recommend immersion of dental calculus in 1ml of sodium hydroxide of 2% w/v solution 24h for a complete eradication of contaminant starch granules.
DOI: 10.20383/101.0123
title: Protocols: extraction of phytoliths from modern plants and sediment, and preparation of sediment for particle size analysis

description: Protocols used by the Topical Archaeology Laboratory (Department of Anthropology and Archaeology, University of Calgary) in the extraction of phytoliths from modern plants and sediments, and the preparation of sediments for particle size analysis.
DOI: 10.20383/101.0186
title: Expenditures of CARL member libraries for scholarly resource subscriptions licensed through CRKN for 2017 - 2018 / Dépenses des bibliothèques membres de l'ABRC pour les abonnements aux ressources savantes sous licence du RCDR pour l'année 2017 - 2018

description: Dataset and summary table of subscription expenditures of 29 member libraries of the Canadian Association of Research Libraries (CARL) for scholarly resources licensed through the Canadian Research Knowledge Network (CRKN) for the 2017 - 2018 fiscal year. / Ensemble de données et tableau sommaire des dépenses d'abonnement de 29 bibliothèques membres de l'Association des bibliothèques de recherche du Canada (ABRC) pour les ressources savantes sous license du Réseau canadien de documentation pour la recherche (RCDR) pour l'exercice financier 2017 - 2018.
DOI: 10.20383/101.0187
title: Expenditures of CARL member libraries for scholarly resource subscriptions licensed through CRKN for 2018 - 2019 / Dépenses des bibliothèques membres de l'ABRC pour les abonnements aux ressources savantes sous licence du RCDR pour l'année 2018 - 2019

description: Dataset and summary table of subscription expenditures of 29 member libraries of the Canadian Association of Research Libraries (CARL) for scholarly resources licensed through the Canadian Research Knowledge Network (CRKN) for the 2018 - 2019 fiscal year. / Ensemble de données et tableau sommaire des dépenses d'abonnement de 29 bibliothèques membres de l'Association des bibliothèques de recherche du Canada (ABRC) pour les ressources savantes sous license du Réseau canadien de documentation pour la recherche (RCDR) pour l'exercice financier 2018 - 2019.
DOI: 10.20383/102.0358
title: Improving Mental Health Act rights advice communications and practices

description: Clinicians taking part in training sessions on patient rights advice were asked to complete pre-session and post-session questionnaires and evaluations. This dataset contains anonymized focus group data and questionnaire data taken over 5 sessions in 2018, at hospitals in Metro Vancouver. Please see "Interpreting CPD" file in this dataset for additional information.
DOI: 10.20383/101.0170
title: Multimodal data with wide-field GCaMP imaging and sub-cortical/cortical single unit recording (2015)

description: This dataset includes raw wide-field GCaMP image sequences and time stamps of spike trains simultaneously recorded with GCaMP imaging and processed GCaMP images and spike trains: df/f0 with 0.1-10 band pass filter and spike train binned in one frame time. Most experiments were performed toward the end of the mouse light cycle. Mice were anesthetized with isoflurane (0.5–1.0%) or urethane during data collection. Images of the cortical surface were recorded through a pair of front-to-front video lenses coupled to a CCD camera. Calcium indicators were excited with blue-light-emitting diodes (470 nm) with bandpass filters (467–499 nm). Emission fluorescence was filtered using a 510–550 nm bandpass filter. For in vivo single unit recording, the electrode was inserted into the right hemisphere with a 45 degree angle from the lateral surface of the cortex to avoid contact with the region where wide-field imaging was performed. The electrode was first held in the cortex for cortical recordings and then advanced into the sub-cortical areas.
DOI: 10.20383/101.0222
title: Unscented Kalman filter (UKF) based nonlinear parameter estimation for a turbulent boundary layer: DNS data

description: This repository contains the raw data (9 snapshots) of a turbulent channel flow at a bulk Mach number of 0.3 and a Re_tau of about 750. Postprocessing scripts are available in GitLab at https://gitlab.com/mpilab_waterloo/dns-post-processing. This data was used for the analysis of the following paper: Pan, Z., Zhang, Y., Gustavsson, J.P.R., Hickey, J.-P. and Cattafesta III, L. N. Unscented Kalman filter (UKF) based nonlinear parameter estimation for a turbulent boundary layer: a data assimilation framework, Meas. Sci. and Technol. 2020.
DOI: 10.20383/101.0237
title: The role of disulfide bonds in a Solanum tuberosum saposin-like protein explored using molecular dynamics

description: The dataset contains simulation results for the associated publication on the role of disulfide bonds in the potato (Solanum tuberosum) plant specific insert protein. In addition, the files required to run the simulations (initial structures, topologies, and molecular dynamics parameter files) are included.
DOI: 10.20383/101.0114
title: Organic barn dust inhibits surfactant protein D production and GPR116

description: Data sets for paper "Organic barn dust inhibits surfactant protein D production through protein kinase-c alpha dependent increase of GPR116" submitted to PLOS One. Data included covers response of mice to organic dust in relation to surfactant D production. A549 human cell line responses to organic dust with or without inhibition of protein kinase C-alpha are also shown in relation to surfactant D and GPR116 mRNA expression.
DOI: 10.20383/101.0230
title: Medium-Resolution Surface Meteorological Forcing Data for Hydrological Modelling and Climate Change Impact Analysis over most of North America

description: This dataset provides an improved set of forcing data for large-scale hydrological modelling and climate change impacts assessment over a domain covering most of North America. The EU WATCH ERA-Interim reanalysis (WFDEI) has a long historical record (1979-2016) and global coverage. 30 years of WFDEI data (1979-2008) were used to bias-correct climate projections from 15 ensemble members of Canadian Centre for Climate Modelling and Analysis Canadian Regional Climate Model (CanRCM4) simulations between 1951–2100 under Representative Concentration Pathway— RCP8.5. A multivariate bias correction algorithm (MBCn) was used to adjust the joint distribution of a set of seven meteorological variables, preserving their auto and cross correlations simultaneously. An analysis of the datasets shows the biases in the CanRCM4 during the historical period with respect to WFDEI have been removed and that the climate change signals in CanRCM4 are preserved. The resulting bias-corrected dataset (CanRCM4-WFDEI 3h*0.50ᵒ resolution) is a consistent set of historical and climate projection data suitable for large-scale modelling and future climate scenario analysis. **Please note: This dataset is linked to an ESSD paper at https://doi.org/10.5194/essd-12-629-2020.  The authors kindly request that you reference this paper in addition to the dataset.
DOI: 10.20383/101.0130
title: A multi-scale meteorological dataset of the June 2013 flood in Southern Alberta, Canada

description: From June 19 to June 22, 2013, intense rainfall and concurrent snowmelt led to devastating floods in the Canadian Rockies, foothills and downstream areas of southern Alberta (Canada). The complexity of the topography in the upper catchments and the presence of snow at high elevations made, among other factors, hydrological forecasting challenging for this extreme event. This dataset contains an ensemble of variables at different resolutions (10, 2.5 and 1 km) that can be used to drive hydrological models during this extreme event. The latest operational version of the Canadian Numerical Weather Prediction model GEM (Global Environmental Multi-scale) was used to recreate the atmospheric conditions during the flooding event. Short-term 12-h forecasts were produced 4 times per day from 18 June 2013 00 UTC to 22 June 2013 12 UTC. Four 6-h quantitative precipitation estimation products were then generated using the Canadian Precipitation Analysis (CaPA) system by varying (i) the station density (especially in the upper parts of the catchments) and (ii) the horizontal resolution of the GEM precipitation background.