cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10435867
title: Toxic Content Detection in online social networks: a new dataset from Brazilian Reddit Communities

description: This is new dataset of 2,500 manually annotated examples of comments extracted from the top 10 largest Brazilian subreddits on Reddit. The dataset has been annotated by crowd-sourcing efforts with contributions from the departments of computer science (DCC) and the linguistic group @ UFMG. As part of our contribution to the toxicity automatic detection and moderation of online social networks, we're making the dataset public for research.

Dataset

The dataset contains 2,500 manually annotated comments from the most popular brazilian communities on Reddit. The data sampling proccess was a stratified sampling by the number of generated publications by subreddit and the month of publication. The list of communities collected is presented below. The collected data period ranges from January 2022 to December 2022.

 




Subreddit
Posts
Comments


r/brasil
110,829 
2,136,866


r/desabafos
115,876
1,211,643


r/futebol
35,826
1,214,412


r/saopaulo
7,308
81,969


r/eu_nvr
12,631
188,620


r/botecodoreddit
7,059
57,298


r/conversas
21,967
326,061


r/investimentos
9,756
141,823


r/tiodopave
2,371
11,584


r/brasilivre
67,301
1,219265


Total
390,924
6,589,541




 

Annotation proccess

The annotators were divided into groups of raters and each group was assigned a batch of comments to label. The raters were then asked to label a comment as Toxic, Non-toxic, I do not know and Missing info. During the annotation process, the raters were encouraged to assign one of the uncertain labels when they're not sure about the toxicity of a comment or the context is missing. 

Available data

The dataset is available as csv file and the label was assigned as a majority vote among the raters. The available data are the original collected comment id and body. The label was created from the original classification from the annotators. No data processing has been done on this version of the dataset. The overall schema of the dataset if presented below.

- id: The unique identifier of the comment on the Reddit platform- body: The original comment text publication- is_toxic: The final label of a given comment. The label is 0 for non-toxic comments, 1 for toxic comments and -1 for comments where the raters disagreed about the toxicity.
DOI: 10.5281/zenodo.10435979
title: Rare Diseases hand-annotated news articles: Angelman, De Lange, Fragile X, Kleefstra

description: This dataset was produced in 2023 from the data collected throughout 2023 from Event Registry (news) for the development of the Rare Diseases Mining project (https://idefine-europe.org/medline)

The data is distributed across 4 specific diseases supporting the research paper "Automatic text classification and interactive data visualization of published scientific and news articles on Rare Diseases"

The available data comes in the file formats:CSV - the hand annotation of the news articles in TXT with 5 to 10 MeSH headings

This work was prepared by Joao Pita Costa (researcher) and curated by Tanja Zdolšek Draksler (domain expert)
DOI: 10.5281/zenodo.10435978
title: Rare Diseases hand-annotated news articles: Angelman, De Lange, Fragile X, Kleefstra

description: This dataset was produced in 2023 from the data collected throughout 2023 from Event Registry (news) for the development of the Rare Diseases Mining project (https://idefine-europe.org/medline)

The data is distributed across 4 specific diseases supporting the research paper "Automatic text classification and interactive data visualization of published scientific and news articles on Rare Diseases"

The available data comes in the file formats:CSV - the hand annotation of the news articles in TXT with 5 to 10 MeSH headings

This work was prepared by Joao Pita Costa (researcher) and curated by Tanja Zdolšek Draksler (domain expert)
DOI: 10.5281/zenodo.10252551
title: Diversity-aware Fairness Testing of Machine Learning Classifiers through Hashing-based Sampling

description: The experimental results of the evaluation of VBT-X.

Abstract



Context:

There are growing concerns about algorithmic fairness, as some machine learning (ML)-based algorithms have been found to exhibit biases against protected attributes such as gender, race, age and so on. Individual fairness requires an ML classifier to produce similar outputs for similar individuals. Verification Based Testing (Vbt) is a state-of-the-art black-box testing algorithm for individual fairness that leverages constraint solving to generate test cases.




Objective:

Generating diverse test cases is expected to facilitate efficient detection of diverse discriminatory data instances (i. e., cases that violate individual fairness). Hashing-based sampling techniques draw a sample approximately uniformly at random from the set of solutions of given Boolean constraints. We propose Vbt-X, which improves Vbt with hashing-based sampling, aiming to improve its testing performance.




Method:

We realize hashing-based sampling for Vbt. The challenge is that the off-the-shelf hashing-based sampling techniques cannot be integrated in a straightforward manner because the constraints in Vbt are generally not Boolean. Moreover, we propose several enhancement techniques to make Vbt-X more efficient.




Results:

To evaluate our method, we conduct experiments, where Vbt-X is compared to Vbt, Sg and ExpGA (other well-known fairness testing algorithms) over a set of configurations consisting of several datasets, protected attributes, and ML classifiers. The results show that, with each configuration, Vbt-X detects more discriminatory data instances with higher diversity than Vbt and Sg. Vbt-X detects discriminatory data instances with higher diversity than ExpGA, though the number of discriminatory data instances detected by Vbt-X is lesser than ExpGA.




Conclusion:

Our proposed method performs better than other state-of-the-art black-box fairness testing algorithms, particularly in terms of diversity. Our method can serve to efficiently identify flaws in ML classifiers with respect to individual fairness for subsequent improvements of an ML classifier. On the other hand, although our method is specific to individual fairness, it could work for testing other aspects of a software system such as security and counterfactual explanations with some technical adaptations, which remains for future work.


 



Acknowledgments

This paper is partly based on results obtained from a project, JPNP20006, commissioned by the New Energy and Industrial Technology Development Organization (NEDO). This paper is supported by JST SPRING, Grant Number JPMJSP2131.
DOI: 10.5281/zenodo.10252552
title: Diversity-aware Fairness Testing of Machine Learning Classifiers through Hashing-based Sampling

description: The experimental results of the evaluation of VBT-X.

Abstract



Context:

There are growing concerns about algorithmic fairness, as some machine learning (ML)-based algorithms have been found to exhibit biases against protected attributes such as gender, race, age and so on. Individual fairness requires an ML classifier to produce similar outputs for similar individuals. Verification Based Testing (Vbt) is a state-of-the-art black-box testing algorithm for individual fairness that leverages constraint solving to generate test cases.




Objective:

Generating diverse test cases is expected to facilitate efficient detection of diverse discriminatory data instances (i. e., cases that violate individual fairness). Hashing-based sampling techniques draw a sample approximately uniformly at random from the set of solutions of given Boolean constraints. We propose Vbt-X, which improves Vbt with hashing-based sampling, aiming to improve its testing performance.




Method:

We realize hashing-based sampling for Vbt. The challenge is that the off-the-shelf hashing-based sampling techniques cannot be integrated in a straightforward manner because the constraints in Vbt are generally not Boolean. Moreover, we propose several enhancement techniques to make Vbt-X more efficient.




Results:

To evaluate our method, we conduct experiments, where Vbt-X is compared to Vbt, Sg and ExpGA (other well-known fairness testing algorithms) over a set of configurations consisting of several datasets, protected attributes, and ML classifiers. The results show that, with each configuration, Vbt-X detects more discriminatory data instances with higher diversity than Vbt and Sg. Vbt-X detects discriminatory data instances with higher diversity than ExpGA, though the number of discriminatory data instances detected by Vbt-X is lesser than ExpGA.




Conclusion:

Our proposed method performs better than other state-of-the-art black-box fairness testing algorithms, particularly in terms of diversity. Our method can serve to efficiently identify flaws in ML classifiers with respect to individual fairness for subsequent improvements of an ML classifier. On the other hand, although our method is specific to individual fairness, it could work for testing other aspects of a software system such as security and counterfactual explanations with some technical adaptations, which remains for future work.


 



Acknowledgments

This paper is partly based on results obtained from a project, JPNP20006, commissioned by the New Energy and Industrial Technology Development Organization (NEDO). This paper is supported by JST SPRING, Grant Number JPMJSP2131.
DOI: 10.5281/zenodo.10436005
title: papasula_abbotti_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436006
title: papasula_abbotti_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436014
title: ВЛИЯНИЕ ФАКТОРОВ ОКРУЖАЮЩЕЙ СРЕДЫ НА ОРГАНИЗМ ЧЕЛОВЕКА И ЕГО ПРОФИЛАКТИКА
DOI: 10.5281/zenodo.10436015
title: ВЛИЯНИЕ ФАКТОРОВ ОКРУЖАЮЩЕЙ СРЕДЫ НА ОРГАНИЗМ ЧЕЛОВЕКА И ЕГО ПРОФИЛАКТИКА
DOI: 10.5281/zenodo.10435847
title: DatasetOpen The dataset of Synoptic Features of the Regional Daily Extreme Precipitation over the Yangtze River Delta during the Summer Seasons of 1979-2021

description: The dataset contains the SOM results, the start and end dates of the Meiyu season, and the condition of extreme precipitation stations per day during the summer seasons of 1979-2021.
DOI: 10.5281/zenodo.10435848
title: DatasetOpen The dataset of Synoptic Features of the Regional Daily Extreme Precipitation over the Yangtze River Delta during the Summer Seasons of 1979-2021

description: The dataset contains the SOM results, the start and end dates of the Meiyu season, and the condition of extreme precipitation stations per day during the summer seasons of 1979-2021.
DOI: 10.5281/zenodo.10436030
title: spinus_crassirostris_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436031
title: spinus_crassirostris_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10435789
title: The dataset of Synoptic Features of the Regional Daily Extreme Precipitation over the Yangtze River Delta during the Summer Seasons of 1979-2021

description: The dataset contains the SOM results, the start and end dates of the Meiyu season, and the condition of extreme precipitation stations per day during the summer seasons of 1979-2021.
DOI: 10.5281/zenodo.10435788
title: The dataset of Synoptic Features of the Regional Daily Extreme Precipitation over the Yangtze River Delta during the Summer Seasons of 1979-2021

description: The dataset contains the SOM results, the start and end dates of the Meiyu season, and the condition of extreme precipitation stations per day during the summer seasons of 1979-2021.
DOI: 10.5281/zenodo.10436013
title: The dataset of Synoptic Features of the Regional Daily Extreme Precipitation over the Yangtze River Delta during the Summer Seasons of 1979-2021

description: The dataset contains the SOM results, the start and end dates of the Meiyu season, and the condition of extreme precipitation stations per day during the summer seasons of 1979-2021.
DOI: 10.15151/esrf-dc-1436468719
title: PaFabF C164A in complex with 4-(1H-pyrazole-3-carbonylamino)pentanoic acid

description: X-ray crystallographic diffraction data of the crystal of recombinantly expressed and purified Pseudomonas aeruginosa β-ketoacyl-(acyl-carrier-protein) synthase II (FabF) with C164 A mutation. The crystal was soaked with 4-(1H-pyrazole-3-carbonylamino)pentanoic acid.
DOI: 10.5281/zenodo.10436036
title: ALZHEIMER'S DISEASE AND ITS THERAPY BY WITHANIA SOMNIFERA PHYTOCHEMICALS
DOI: 10.5281/zenodo.10436037
title: ALZHEIMER'S DISEASE AND ITS THERAPY BY WITHANIA SOMNIFERA PHYTOCHEMICALS
DOI: 10.17632/8gsffr5834.1
title: A data set for CH4 concentrations in lake water of Lake Keluke and Lake Tuosu

description: A data set for CH4 concentrations in lake water of Lake Keluke and Lake Tuosu over different months from 2021 to 2023
DOI: 10.17632/nntvvhv5yn.1
title: Data for: single and multi-DOF planetary gear trains

description: The complete databases of non-fractionated planetary gear trains with 3-9 links and 1-3 DOFs are provided. Upper triangular elements (including the diagonal elements) of the adjacency matrix of each planetary gear train are stored in the database. The adjacency matrix of a planetary gear train is defined according to “Yang WJ, Ding HF, Zi B, et al. New graph representation for planetary gear trains. ASME J Mech Des 2018; 140(1): 012303”.
DOI: 10.17632/fzskwpzs5j.1
title: Serial Section Histopathology Image Dataset

description: Total no. of Colon serial section histopathology images with 10x magnification: 48
Total no. of Colon serial section histopathology images with 40x magnification: 48

Total no. of Pancreas serial section histopathology images with 10x magnification: 36
Total number of Pancreas serial section histopathology images with 40x magnification: 36

Image type: RGB
File format: .tif
Image dimension: 1280x960
Image size: 2.38 MB to 3.51 MB
DOI: 10.17632/s76dtyshpw.1
title: Translational repression of Nox4 mRNA via the EI24-RTRAF interaction is crucial for hydrogen peroxide homeostasis and insulin synthesis

description: Here, we found that the endoplasmic reticulum membrane-localized protein, EI24, controls the translation of nicotinamide adenine dinucleotide phosphate oxidase 4 (NOX4), which constitutively produces hydrogen peroxide (H2O2), by recruiting an RNA transcription, translation, and transport factor (RTRAF) to the 3’-UTRs of Nox4. Depletion of EI24 causes RTRAF to relocate into the nucleus, releasing the brake on Nox4 mRNA translation, and thus, the uncontrolled translation of Nox4 leads to a substantial generation of intracellular H2O2. This suppresses the translation of V-maf musculoaponeurotic fibrosarcoma oncogene homolog A (MafA), inhibits its binding to the Ins2 gene promoter, and ultimately hinders insulin transcription. Treatment with a specific NOX4 inhibitor or the antioxidant N-acetyl-cysteine (NAC) restored MafA translation and downstream insulin synthesis while alleviating the diabetic symptoms in pancreatic beta-cell specific Ei24-KO mice. Mass spectrometry data of interacting proteins, mRNA sequencing data, etc. are included.
DOI: 10.17632/pym334vmrf.1
title: DATASET - Work-related musculoskeletal disorders among dental students

description: Dataset of the cross-sectional study of work-related musculoskeletal disorders among dental students.
DOI: 10.17632/4bszsy3rcb.1
title: The instances for Sections 3-6 in the multi-visit vehicle routing problem with drones considering pickup and delivery

description: The four folders contain the instances used in the Sections 3-6 in the problem
DOI: 10.17632/kz6bvkfs8f.2
title: DATA_5% dextrose

description: Effectiveness of intravenous glucose infusion during recovery from anesthesia on postoperative recovery in patients undergoing gynecologic laparoscopic surgery.
DOI: 10.17632/kz6bvkfs8f.3
title: DATA_5% dextrose

description: Effectiveness of intravenous glucose infusion during recovery from anesthesia on postoperative recovery in patients undergoing gynecologic laparoscopic surgery.
DOI: 10.17632/kz6bvkfs8f.1
title: DATA_5% dextrose

description: Effectiveness of intravenous glucose infusion during recovery from anesthesia on postoperative recovery in patients undergoing gynecologic laparoscopic surgery.
DOI: 10.17632/kz6bvkfs8f.4
title: DATA_5% dextrose

description: Effectiveness of intravenous glucose infusion during recovery from anesthesia on postoperative recovery in patients undergoing gynecologic laparoscopic surgery.
DOI: 10.17632/3x9z4rwdrw.1
title: Identification of the resistance mechanism to CDK4/6 inhibition and novel overcoming combination therapy with RNR inhibition for chemo-resistant bladder cancer

description: The identification of 42 down-regulated protein candidates in treated T24 cells and 46 in RT112 cells compared to the PBS control with 18 overlapping proteins (Supplementary Table S1); At the different time points, 2596, 3674 and 1994 genes were identified as differentially expressed genes (DEGs) (Supplementary Table S2, 3, 4); Identified activation of enormous genes that may confer acquired resistance to CDK4/6 inhibition after 7 days of CDK4/6 inhibition by a CRISPR-dCas9 activation functional genomics analysis, to further narrow down the functional candidates, we applied LFC＞1 and FDR＜0.001 and identified 365 potential candidates in this study (Supplementary Table S5); To further investigate the potential biological interaction network of RRM2 in clinical bladder cancer specimen, we inquired RRM2 in the TCGA cohorts for mRNA co-expression. Through this analysis, we identified the top 10 correlated genes: KIF18B, SKA3, FANCA, MYBL2, CENPA, FAM72B, IQGAP3, E2F1, FAM72D and CDT1 ranked by Spearman's Correlation (Supplementary Table S6); The informaton of prospectively collected 20 MIBC bladder cancer specimens from patients who received radical cystectomy in our hospital. Patients were divided into 3 subgroups according to therapy naïve, chemotherapy responsive and chemotherapy resistance (Supplementary Table S7)
DOI: 10.17632/v4cvwt8pzr.1
title: Cutaneous Squamous Cell Carcinoma in Patients with Solid Organ Malignancy Supplemental Table 1

description: The objective of this study is to evaluate the incidence, tumor characteristics, and outcomes of cSCC in patients with SOM compared to patients with no history of SOM. We conducted a multivariate analysis to examine the association between solid organ malignancy and poor outcomes. Based on univariate analysis, models were adjusted for age, gender, and BWH stage. However, the findings did not reveal significant associations between history of solid organ malignancy and development of poor outcomes (Supplemental Table 1). Overall, the findings of this study indicate an elevated incidence of high-stage cutaneous squamous cell carcinoma among individuals with a prior history of solid organ malignancy. However, no definitive associations were established been SOM and adverse outcomes. Additional research is warranted to thoroughly examine the interplay between solid organ malignancy, cSCC tumorigenesis, and disease outcomes.
DOI: 10.17632/nhhcm56gjw.1
title: Chinese EFL Learners’ Constructs of L2 Past Time

description: This study aims to investigate whether the mechanisms by which Chinese EFL learners use English to construct past time concepts are consistent with those of native English speakers. Experiment 1 collected eye-movement indicators from 80 Chinese learners when reading English sentences. The results of data analysis showed that adverbs of past time had an enhancing effect on Chinese learners’ construction of past time concepts. In Experiment 2, 40 learners were asked to make grammatical judgments to measure their ability to recognize grammatical errors. The results showed that the learners were able to recognize grammatical errors and had the knowledge and performative ability to construct past time concepts using English. Experiment 3 used a self-paced reading paradigm to collect the reaction times of 40 learners when processing grammatically correct (simple past tense + adverbial of past time) and grammatically incorrect (present perfect tense + adverbial of past time) sentences. The results showed that there was a significant difference in the reaction times of correct and incorrect sentences in the critical area when subjects read sentences composed of predicates with achievement verbs, while there was no significant difference when they read sentences composed of the state, activity and accomplishment verbs. The experimental results show that although Chinese ELF Learners have acquired the knowledge of constructing past time concepts in English, they tend to construct past time concepts accomplishment the perfective tense and adverbials of past time when using English, and are unable to construct past time concepts accomplishment the lexical changes of the past tense. In addition, Chinese learners' understanding of English temporal adverbials is also constructed as past time points or past time periods depending on whether they are used with the present perfect tense or not. This study argues that the above optimal representation of Chinese learners are due to the influence of their Chinese mother tongue, suggesting that the differences between English and Chinese are fundamental in the way they construct past time.