cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qscf6h
title: Occurrence Download

description: A dataset listing the 65542 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-79.88319 38.016,-79.8832 38.01706,-79.88439 38.01629,-79.88319 38.016)),((-79.72567 37.97867,-79.88007 38.00738,-80.00735 38.07606,-80.24501 38.053,-80.58161 37.87086,-80.83702 37.79015,-80.95929 37.68741,-81.30067 37.59199,-82.01573 37.23946,-82.57368 37.05496,-82.885 37.00921,-83.04955 37.01083,-83.19911 37.05856,-83.29283 37.13088,-83.3805 37.2628,-83.4284 37.42438,-83.39305 37.76939,-83.21775 38.11262,-83.16003 38.29718,-83.08603 38.84264,-83.09498 39.00949,-83.14522 39.15941,-83.2282 39.28927,-83.33306 39.38174,-83.5327 39.44439,-83.72721 39.40354,-83.87646 39.22199,-83.96927 38.9208,-84.09728 38.7496,-84.31069 38.61166,-84.54928 38.57276,-84.68307 38.4964,-84.96522 38.56173,-85.30788 38.77882,-85.56658 38.85447,-85.89247 39.02939,-86.20504 39.09062,-86.41495 39.07275,-86.54387 39.00257,-86.70686 38.86466,-86.82488 38.6598,-86.84724 38.48068,-86.78137 38.10738,-86.77905 37.96363,-86.85402 37.78818,-86.95974 37.67518,-87.12838 37.61698,-87.31153 37.60446,-87.58503 37.62791,-88.12464 37.72251,-88.65805 37.72502,-89.03095 37.64765,-89.17993 37.55663,-89.29929 37.43597,-89.40214 37.24451,-89.42478 37.06426,-89.4003 36.72213,-89.2859 36.49775,-89.25758 36.30534,-89.3333 36.2116,-89.36224 35.99807,-89.42323 35.98119,-89.43123 35.93179,-89.52824 35.90117,-89.67321 35.66979,-89.91633 35.48091,-89.99052 35.33265,-90.08768 35.21109,-90.12253 35.03924,-90.11185 34.81843,-89.99931 34.34743,-89.78159 33.88945,-89.39249 33.3017,-89.28131 33.17411,-89.11 33.03841,-89.01785 32.89576,-88.81205 32.69691,-88.3906 32.08182,-88.19641 31.89327,-88.03738 31.78417,-87.36885 31.52647,-86.85848 31.45248,-86.72863 31.47284,-86.54652 31.56323,-86.17676 31.56338,-86.11743 31.59365,-86.06875 31.6838,-86.01448 31.71694,-85.38508 31.8177,-85.17377 31.92296,-84.9942 32.09445,-84.88301 32.29335,-84.85893 32.50355,-84.89866 32.68334,-84.9593 32.77197,-85.3801 32.90312,-85.55794 33.01794,-85.60247 33.13188,-85.60694 33.25547,-85.57317 33.36601,-85.50038 33.47359,-85.32897 33.5897,-85.17544 33.62374,-84.91745 33.62768,-84.69059 33.75149,-84.59229 33.85345,-84.48154 34.0355,-84.31966 34.44225,-84.14765 34.59859,-83.93706 34.67735,-83.57664 34.64364,-83.39617 34.77879,-83.06008 34.80308,-82.79446 34.88995,-82.42166 35.2195,-82.29823 35.37923,-82.20579 35.56186,-82.12051 35.63739,-81.57067 35.96727,-81.03806 36.22364,-80.76738 36.40698,-80.22489 36.58114,-80.01717 36.72264,-79.87241 36.76365,-79.73077 36.85985,-79.58217 36.99889,-79.41909 37.20262,-79.37149 37.29822,-79.35359 37.42314,-79.38104 37.54264,-79.52968 37.68009,-79.63317 37.87143,-79.72567 37.97867)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 65542 records were derived from 884 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187754-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.887np5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005836-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghjufq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009722-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcifhn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008300-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv82vt
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loxosceles irishi Lotz, 2017"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189002-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf3lis
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Pongamia pinnata (L.) Pierre"
 ]
}

 The dataset includes 170 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007747-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqkmtc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042724-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erwr2z
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.45262 17.14543,-20.30633 18.81729,-22.32649 -3.61352,6.93109 1.40206,0.45262 17.14543))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "InstitutionCode is one of (cas, cumv, mcz, aum, usnm, saiab)",
 "TaxonKey is Hemichromis fasciatus Peters, 1857"
 ]
}

 The dataset includes 81 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191806-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.piq83v
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001118-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvo1ep
title: Occurrence Download

description: A dataset containing 23410 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Myotis velifer (J.A.Allen, 1890)",
 "TaxonKey is Eptesicus fuscus miradorensis (H.Allen, 1866)",
 "TaxonKey is Eptesicus fuscus hispaniolae Miller, 1918",
 "TaxonKey is Eptesicus fuscus lynni Shamel, 1945",
 "TaxonKey is Eptesicus fuscus dutertreus (Gervais, 1837)",
 "TaxonKey is Eptesicus fuscus pelliceus Thomas, 1920",
 "TaxonKey is Eptesicus fuscus petersoni Silva-Taboada, 1974",
 "TaxonKey is Eptesicus fuscus bahamensis (Miller, 1897)",
 "TaxonKey is Eptesicus fuscus osceola Rhoads, 1902",
 "TaxonKey is Eptesicus fuscus bernardinus Rhoads, 1902",
 "TaxonKey is Eptesicus fuscus wetmorei Jackson, 1916",
 "TaxonKey is Eptesicus fuscus fuscus",
 "TaxonKey is Eptesicus fuscus pallidus Young, 1908",
 "TaxonKey is Eptesicus fuscus peninsulae (Thomas, 1898)"
 ]
}

 The dataset includes 23410 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005859-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvqip3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009176-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjtcah
title: Occurrence Download

description: A dataset containing 189119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium ursinum L."
 ]
}

 The dataset includes 189119 records from 796 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088949-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ks5g0
title: CCDC 2376722: Experimental Crystal Structure Determination

description: Related Article: Zhonghong Chen, Weihao Yang, Maomao Jia, Jiarong Shi, Jiyang Li, Haohua Chen, Yang Li|2025|Nature Chemistry|17|1169|doi:10.1038/s41557-025-01878-w
description: Related Article: Chen|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ng0dk
title: CCDC 2456328: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.57932/2c320503-1c74-480e-9e54-ac300db77dec
title: UA-ICON simulation output files (netcdf) - June 2023

description: Global simulation outputs obtained with the UA-ICON model over June 2023. Atmospheric fields are included, especially winds and temperature, as a function of time and altitude, up to 150 km height, with a 13 km horizontal resolution.
DOI: 10.5281/zenodo.15705946
title: [Data augmentation in a TTL] - Fictive dataset (1M) // 100 reactions per reaction template (13'953 template extracted from USPTO-FULL IBM version)

description: Equilibrated version of the fictive dataset, containing 1'097k reactions with up to 100 reactions per radius 1 reaction template (13'953 reaction templates from USPTO-full, IBM version).

 

Title of the manuscript:

"Data augmentation in a Triple Transformer Loop retrosynthesis model"

Abstract:

Reactions in the US Patent Office (USPTO) are biased towards a few over-represented reaction types, which potentially limits its usefulness for computer-assisted synthesis planning (CASP). To obtain an equilibrated dataset, we applied retrosynthesis templates to USPTO molecules as products (P) to generate starting materials (SM). We then used transformer T2 from our recently reported triple transformer loop (TTL) retrosynthesis model to predict reagents (R) for the SM®P reaction. Finally, we validated the prediction by requesting a high confidence prediction (>95%) for the prediction of P from SM+R by TTL transformer T3. We generated up to 5,000 reactions per template, resulting in 27.5 million validated fictive reactions covering the chemical space of the original UPSTO dataset. To exemplify the use of this dataset, we show that a single-step retrosynthesis transformer model trained with a template equilibrated subset of 1,097,374 fictive reactions outperforms the corresponding model trained on USPTO reactions only.
DOI: 10.5281/zenodo.17301372
title: [Data augmentation in a TTL] - Fictive dataset (1M) // 100 reactions per reaction template (13'953 template extracted from USPTO-FULL IBM version)

description: Equilibrated version of the fictive dataset, containing 1'097k reactions with up to 100 reactions per radius 1 reaction template (13'953 reaction templates from USPTO-full, IBM version).

 

Title of the manuscript:

"Data augmentation in a Triple Transformer Loop retrosynthesis model"

Abstract:

Reactions in the US Patent Office (USPTO) are biased towards a few over-represented reaction types, which potentially limits its usefulness for computer-assisted synthesis planning (CASP). To obtain an equilibrated dataset, we applied retrosynthesis templates to USPTO molecules as products (P) to generate starting materials (SM). We then used transformer T2 from our recently reported triple transformer loop (TTL) retrosynthesis model to predict reagents (R) for the SM®P reaction. Finally, we validated the prediction by requesting a high confidence prediction (>95%) for the prediction of P from SM+R by TTL transformer T3. We generated up to 5,000 reactions per template, resulting in 27.5 million validated fictive reactions covering the chemical space of the original UPSTO dataset. To exemplify the use of this dataset, we show that a single-step retrosynthesis transformer model trained with a template equilibrated subset of 1,097,374 fictive reactions outperforms the corresponding model trained on USPTO reactions only.
DOI: 10.15468/dl.zgq2jr
title: Occurrence Download

description: A dataset containing 1620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Portugal, Spain)",
 "TaxonKey is Veronica micrantha"
 ]
}

 The dataset includes 1620 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064859-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjavun
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metashangrilaia forrestii (W.W.Sm.) Al-Shehbaz & D.A.German",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320389-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ma2uqn
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Juncus ecuadoriensis Balslev"
 ]
}

 The dataset includes 80 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227329-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2816672/2368276
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.bg83rj
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acropora prolifera (Lamarck, 1816)",
 "HasGeospatialIssue is true",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014131-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asn2gg
title: Occurrence Download

description: A dataset containing 8633 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Steatoda Sundevall, 1833"
 ]
}

 The dataset includes 8633 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010716-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e7mp4
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Hymenocallis littoralis (Jacq.) Salisb.",
 "Year 1901-2021"
 ]
}

 The dataset includes 581 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321979-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2816416/2368277
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.2u7e8j
title: Occurrence Download

description: A dataset containing 120954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platycnemididae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than 1980"
 ]
}

 The dataset includes 120954 records from 632 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265141-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzbjoc
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Gonatodes antillensis (Lidth De Jeude, 1887)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 122 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003606-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khcepv
title: Occurrence Download

description: A dataset containing 300497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "InstitutionCode is aran"
 ]
}

 The dataset includes 300497 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010716-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2816683/2368278
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.kwaqkn
title: Occurrence Download

description: A dataset containing 124872 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.598907470703125 43.481822852999905,5.511016845703125 43.509717009288075,5.400552749633789 43.51127322324609,5.412139892578125 43.54257572246922,5.4547119140625 43.563476493226595,5.480804443359375 43.61122246320032,5.483551025390625 43.6499881760459,5.503549575805664 43.66644361490711,5.598907470703125 43.66985832954972,5.69091796875 43.70362249839005,5.763702392578124 43.661911057260674,5.79254150390625 43.625141236940564,5.804901123046875 43.601278509333646,5.799407958984375 43.5734266934657,5.76507568359375 43.52565074189047,5.71563720703125 43.52166770320007,5.598907470703125 43.481822852999905)))"
 ]
}

 The dataset includes 124872 records from 382 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253229-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2816958/2368279
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.h2g9n3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "DatasetKey is NMNH Material Samples (USNM)",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)"
 ]
 },
 "TaxonKey is Dactylomys I.Geoffroy Saint-Hilaire, 1838"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249370-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqov6x
title: Occurrence Download

description: A dataset containing 2689987 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((10.21179 59.47998,11.12366 59.47998,11.12366 60.56213,10.21179 60.56213,10.21179 59.47998))"
 ]
}

 The dataset includes 2689987 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010716-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsqsjv
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone demissa Hook.fil. & Thomson",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 276 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319476-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2817027/2368280
title: Data for EMSL Project 51287 from May 2023
DOI: 10.15468/dl.f5vxgu
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-94.08691 34.62891,-119.31152 34.98047,-94.52637 14.50195,-94.08691 34.62891))",
 "TaxonKey is Plestiodon tetragrammus Baird, 1859"
 ]
}

 The dataset includes 413 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010716-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yunqwf
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dinomys branickii Peters, 1873"
 ]
}

 The dataset includes 79 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050830-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-05.2816679/2368281
title: Data for EMSL Project 51287 from May 2023