cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24967890.v3
title: Co-occurrence patterns between native and non-native species

description: Non-native species may cause cumulative impacts on native communities if their abundance continues to increase through time. This negative effect can reflect on the spatial distribution of native species, especially when native and non-native species are phylogenetically similar. Here, we assessed the spatial co-occurrence between native and non-native fish species using long-term abundance data from six locations in a Brazilian floodplain. We tested whether the co-occurrence of native and non-native species is influenced by non-native species abundance and time since first record, and whether the abundance effect is mediated by the phylogenetic relatedness between native and non-native species. We found that non-native abundance was more influential than the time since first record and co-occurrence between native and non-native species was lower when the non-native abundance was high, regardless of phylogenetic relatedness. The interannual variability in non-native species abundance may overshadow long-term trends in determining the temporal effects of non-native species.
DOI: 10.6084/m9.figshare.26317384.v4
title: Supplementary materials for "Modeling the effects of heat stress on production and enteric methane emission in high-yielding dairy herds"

description: These supplementary materials belong to a study investigating the impacts of heat stress on dairy production and enteric methane emission.
DOI: 10.6084/m9.figshare.3559092.v1
title: Supplement 1. Raw data in comma-separated format.

description: File List data.csv (MD5: eac4699fe882465f09cc1d7465164e7a) Description The file data.csv contains data on extinction time of 1,080 experimental populations. Six populations were accidentally destroyed (indicated by Days = −9999). Data columns include: 1. Tube.ID – A unique identifier for each population 2. Block – Block number 3. Startno – The initial population size, either x0 = 3 or x0 = 18 4. Start – Date population was initialized 5. End – Date population was scored extinct 6. Days – Duration of population persistence (extinction time) in days, i.e., End − Start 7. Tetracycline – Indicator for tetracycline addition (0: No, 1: Yes)
DOI: 10.6084/m9.figshare.6797828.v1
title: Raw_data.rar from Synthesis and structure/properties characterizations of four polyurethane model hard segments

description: Four model polyurethane (PU) hard segments were synthesized by reaction of butanol with four typical diisocyanates. The four diisocyanates were aromatic 4,4′-diphenylmethane diisocyanate (4,4′-MDI) and MDI-50 (50% mixture of 2,4′-MDI and 4,4′-MDI), cycloaliphatic 4,4′-dicyclohexylmethane diisocyanate and linear aliphatic 1,6-hexamethylene diisocyanate. FTIR, <sup>1</sup>H NMR, <sup>13</sup>C NMR, MS, X-ray and DSC methods were employed to determine their structures and to analyse their crystallization behaviours and hydrogen bonding interactions. Each of the four PU compounds prepared in the present work displays unique spectral characteristics. The FTIR bands and NMR resonance peaks assigned in the four samples thus provide a reliable database and starting point for investigating the relationship between hard segment structure and the crystallization and hydrogen bonding behaviour in more complex-segmented PU compositions.
DOI: 10.17632/d7w8p438kw
title: Image segmentation and flow prediction of digital rock with U-net network

description: The data for the paper Image segmentation and flow prediction of digital rock with U-net network
DOI: 10.17632/jchztry3r8
title: A novel serum biomarker Enhancer RNA RASSF8-AS1 promotes the progression of gastric cancer

description: PCR data
DOI: 10.17632/kw8gvp8m8x
title: Dataset for - Development of a Deep Learning-based system for Optic Nerve characterization in Transorbital Ultrasound Images on a multicenter dataset

description: This dataset provides all the data and codes to reproduce the results in the related paper. For more information or requests please contact francesco.marzola@polito.it. Maintained version of the code is available at: https://github.com/frmrz/BioLab-PoliTO---BioMedical-Image-and-Signal-Processing

If you use the dataset, please cite:
Marzola Francesco, Lochner Piergiorgio, Naldi Andrea, Lemor Robert, Stögbauer Jakob, and Kristen M. Meiburger. "Development of a Deep Learning–Based System for Optic Nerve Characterization in Transorbital Ultrasound Images on a Multicenter Data Set." Ultrasound in Medicine & Biology, (2023). https://doi.org/10.1016/j.ultrasmedbio.2023.05.011.
DOI: 10.17632/v5v45pv9jy
title: Relationship between smartphone addiction and physical activity among Undergraduate Physical Therapy students 

description: Smartphone abuse can lead to social issues like anxiety and a decline in social and emotional abilities. Additionally, using a smartphone can make it more difficult to physical activity, however it's unclear how smartphone addiction affects physical activity. Consequently, we studied the relationship between excessive smartphone use and physical exercise, as well as its effects.
Students are assessed initially to see whether they are addicted to their smartphones or not. Those who met the requirements for inclusion received a self-administered questionnaire. Physical activity-related questions were included in the survey. Each of the 23 study participants received a copy of the questionnaire.
DOI: 10.6084/m9.figshare.1486365.v1
title: Evolving Networks with Memory

description: Package for simulating graphs with memory - Running instructions. Simply unzip into a folder, and run "gui" from a Matlab terminal.
DOI: 10.6084/m9.figshare.23500512.v1
title: Data from: Response of a pan-European fish index (EFI+) to multiple pressures in rivers across Spain

description: Rivers are ecosystems highly threatened by human activities and fish are an invaluable tool to measure and communicate environmental degradation and restoration. Fish bioassessment is crucial but notoriously difficult in Mediterranean-climate streams for a number of reasons, including low local species richness, faunas with high spatial turnover and generalist species, and scarcity of reference sites. In this study, we conducted the most comprehensive test of the pan-European fish index (EFI+) in the Iberian Peninsula, analysing its response to multiple anthropogenic pressures. We compiled a database, which we provide online, with 2970 electrofishing samples across Spain, involving 100,732 fish of 69 species. Principal component analyses of many quantitative variables were used to create new synthetic anthropogenic pressure indices. Correlation and multiple linear regression analyses were used to test the relationship between these pressures and the fish index (EFI+) and its four individual metrics scores (i.e., density of species intolerant to oxygen depletion, density of fish ≤150 mm of species intolerant to habitat degradation, richness of species of rheophilic reproduction habitat, and density of species of lithophilic reproduction habitat). We also obtained the same models but including the river basin district to test for spatial or methodological differences. Our results indicate that both the EFI+ index and its individual metrics respond to various anthropogenic pressures. These pressures explained about 36% of the variance of EFI+ values. Notably, downstream and mainstream reaches with higher agricultural or urban land uses, increased hydrologic alteration, and water and habitat quality impairment exhibited lower EFI+values. Although less variance was explained for the individual metrics than for the fish index, they responded as expected to the different pressures. For instance, the richness of rheophilic species and the number of lithophilic fish decreased with hydrologic alteration, while the number of fish intolerant to oxygen depletion decreased with water quality impairment. Similar correlations were observed when river basin district was included in the model, but with higher explained variation and greater significance of the pressures. While it is possible to develop regional indices with more metrics and a stronger correlation with anthropogenic pressures, EFI+ is the only fish index that has been validated throughout the Spanish peninsular territory. Our results support the use of EFI+ in intercalibrationexercises across Spain until better regional indices are developed.
DOI: 10.6084/m9.figshare.9765383.v1
title: Data Source for Probabilistic Power Flow

description: We have generated 100000 samples. The former samples are used as training data, the middle samples are used as validation data, and the last samples are used as test data. Due to the data privacy, we have not uploaded the data source of practical 661-bus utility system.
DOI: 10.17632/hjc5myykvz
title: RDLIST, a portable namelist facility

description: Title of program: RDLIST AND PREPROCESSOR MAKEDATA Catalogue Id: AANJ_v1_0 Nature of problem Programs often work by setting defaults and requiring users to change only a few of the parameters. The IBM Fortran NAMELIST facility is very convenient for this, allowing as it does the use of Fortran variable names in the input. The difficulty is that NAMELIST is not generally available. The problem is to write a portable Fortran replacement for NAMELIST. Versions of this program held in the CPC repository in Mendeley Data AANJ_v1_0; RDLIST AND PREPROCESSOR MAKEDATA; 10.1016/0010-4655(81)90137-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/shw76zhxs6
title: Data for: LVQ-KNN: Composition-based DNA/RNA binning of short nucleotide sequences utilizing a prototype-based k-nearest neighbor approach

description: LVQ-KNN software code and documentation
DOI: 10.25383/city.20102876.v3
title: somatosensory oddball EEG data before and after a short mindful meditation

description: Somatosensory oddball task with S1 standards and S2 and S3 oddballs delivered to the index (top S1; bottom S2) and ring (top S3) finger. Recorded with BrainProducts amplifiers and Recorder software. 50 participants were recored before (.1) and after (.2) a 10 minute intervention (short mindfulness or audio clip). In addition, trait measures and interocpetive abilities were recored (FFMQ, STAI-T, Heartbeat counting task, breath test - see excel sheet). Corresponding manuscript published in the journal Mindfulness https://doi.org/10.1007/s12671-022-01938-z.
DOI: 10.6084/m9.figshare.21763160.v1
title: Supplementary Material for: Neonatal Intensive Care Quality Level-Dependent Variations in the Survival Rate of Infants with a Birth Weight of 500 g or Less in Korea: A Nationwide Cohort Study

description: <b><i>Objective:</i></b> Recent evidence suggests that the survival of peri-viable infants with birth weight (BW) ≤500 g could be improved with better care practices in the neonatal intensive care unit (NICU). This study aimed to investigate the care quality level of NICU-dependent variations in the survival rate of infants with BW ≤500 g. <b><i>Methods:</i></b> To determine the quality of NICU care-dependent variations in the survival rate, 226 eligible infants of BW ≤500 g and ≥22 weeks gestation registered in the Korean Neonatal Network between 2013 and 2017 were grouped according to the survival rates of infants at 23–24 weeks gestation, reflecting the care quality level of each NICU as group I (≥50%, <i>n</i> = 107) and group II (&lt;50%, <i>n</i> = 119). <b><i>Results:</i></b> The survival rate of group I infants (40.2%, 43/107) was significantly higher than that of group II infants (14.3%, 17/119). Significantly reduced deaths from birth to the age of 7 days due to cardiorespiratory causes were the primary contributors to improved survival. In multivariable Cox hazard model analyses, besides the gestational age and BW, antenatal steroid use, cesarean section, pH, and base excess at admission were associated with improved infant survival. <b><i>Conclusions:</i></b> The survival rate of pre-viable infants with BW ≤500 g could be improved by providing better NICU quality care practices, including better cardiorespiratory management starting from delivery room resuscitation.
DOI: 10.6084/m9.figshare.27855423.v1
title: Data from paper "Visual experience orthogonalizes visual cortical stimulus responses via population code transformation"

description: Sensory and behavioral experience can alter visual cortical stimulus coding, but the precise form of this plasticity is unclear. We measured orientation tuning in 4,000-neuron populations of mouse V1 before and after training on a visuomotor task. Changes to single-cell tuning curves appeared complex, including development of asymmetries and of multiple peaks. Nevertheless, these complex tuning-curve transformations can be explained by a simple equation: a convex transformation suppressing responses to task stimuli specifically in cells responding at intermediate levels. The strength of the transformation varies across trials, suggesting a dynamic circuit mechanism rather than static synaptic plasticity. The transformation results in sparsening and orthogonalization of population codes for task stimuli. It does not improve the performance of an optimal stimulus decoder, which is already perfect even for naïve codes, but it improves the performance of a suboptimal decoder model with inductive bias as might be found in downstream readout circuits.
DOI: 10.6084/m9.figshare.28484015.v1
title: A staged approach using ants as test organism in ecotoxicology: Data repository

description: Ants (Hymenoptera: Formicidae) are eusocial insects and essential for maintaining biodiversity and ecosystem functioning. Despite their ecological relevance, ants are often neglected in ecotoxicity testing. We developed a staged testing scheme using ants as non-target organisms by exposing workers, larvae, and founding queens of three ant species (<i>Camponotus maculatus</i>, <i>Crematogaster</i> sp., and <i>Lasius niger</i>) to various concentrations of the neonicotinoid imidacloprid. Sub-colonies were orally exposed to honey water - imidacloprid solutions and lethal and sublethal effects were monitored and are presented in detail.This Data Repository provides the raw data used for the anaylses in Pohl et al. 2025 (A staged approach using ants as test organism in ecotoxicology)
DOI: 10.6084/m9.figshare.7101650.v1
title: Vision-related quality of life in patients after ocular penetrating injuries

description: Purpose: To measure and investigate visual functioning and health-related quality of life (QOL) in patients after ocular penetrating injuries (OPI). Methods: Fifty-four adult patients with OPI and 26 healthy control subjects were enrolled in the study. The National Eye Institute Visual Functioning Questionnaire (NEI VFQ-25) and the 36-Item Short Form Health Survey (SF 36) were administered. Sociodemographic and clinical data also were collected. The primary outcome measures were comparisons and multivariate analysis among groups for the NEI VFQ-25 and SF 36 subscale scores. Results: All NEI VFQ-25 scores, except general health, were significantly lower in the OPI group than those in the control group. All SF 36 scores were significantly lower in the OPI group than in the control group. The NEI VFQ-25 subscale item scores showed no significant differences with respect to age, educational level, or visual acuity in the injured eye. The SF 36 subscale item scores revealed no significant differences according to gender or educational level. Conclusions: Patients with OPI have increased psychological symptoms and lower levels of QOL than healthy control subjects have. Deteriorations in QOL should be kept in mind when managing patients with OPI.
DOI: 10.17632/7w7mc87sy3
title: Blue light emitted by devices does not worsen melasma lesions over five consecutive days of exposure

description: Supplementary files
DOI: 10.17632/z6rxgfkxdj
title: Synthetic Kinetic Data for Hydrocracking Processes

description: This dataset contains synthetic kinetic data generated for modeling hydrocracking reaction systems using Neural Ordinary Differential Equations (Neural ODEs). It includes detailed concentration profiles, reaction rate constants, and feedstock properties across varying temperatures and conditions. The data supports both interpolation and extrapolation tasks, focusing on robustness against data sparsity and noise. It aims to assist researchers in advancing data-driven approaches to modeling chemical kinetics and improving the interpretability of machine learning models in reaction engineering
DOI: 10.6084/m9.figshare.19221678.v3
title: CROWD-5e.xlsx

description: Normative database for 3,022 Croatian words rated on five discrete emotions: happiness, fear, anger, sadness & disgust. <br>Manuscript: CROWD-5e: A 3,022 Croatian words psycholinguistic database covering affective norms for five discrete emotions<br>
DOI: 10.6084/m9.figshare.19407050.v1
title: HL-60 H3K4me3

description: ChIP H3K4me3 HL-60<br>
DOI: 10.6084/m9.figshare.24847887.v1
title: Tweets about immigration - (Germany)

description: Tweets related to immigration made by Compact Magazin, Junge Freiheit, and Sezession im Netz between April 2009 and October 2022.
DOI: 10.6084/m9.figshare.8091332.v1
title: Features.csv

description: This Database belongs to “A Database for Using Machine Learning and Data Mining Techniques for Coronary Artery Disease diagnosis” research paper. This database includes 15 tables. We chose to index papers related to CAD detection using machine learning and data mining approaches that are published between 1992 and 2018. These criteria result in 126 papers in which 490 authors contributed to these papers. These papers studied 68 different datasets with almost more than 360 distinct features collected in 18 countries from Asia, Europe, and America. In these papers, 140 different machine learning or data mining techniques were applied to diagnose CAD. To use csv file, open it in excel or import it in your database.
DOI: 10.17632/3dd2pb9j7t
title: SAR_Bathymetry_Mudiyanselage

description: The datasets and codes are attributed to SAR bathymetry inversion study titled 'Automated high-resolution bathymetry from Sentinel-1 SAR images in deeper nearshore coastal waters in Eastern Florida'.
DOI: 10.17632/c9z9djg2my
title: MLR and ANN process modeling, optimization, and XAI tools

description: This dataset includes CCD result data for Echinocandin B, along with codes for developing multiple linear regression and artificial neural network (ANN) models to optimize the production process based on parameters such as pH, dextrose, molasses, and casein. It contains scripts for hyperparameter optimization, genetic algorithm-based ANN model optimization, explainable AI (XAI) for model interpretation, and statistical model comparison. Additionally, the package provides code for generating response surface methodology (RSM) plots, residual plots for model accuracy assessment, and LIME-SHAP plots for model explanation.
DOI: 10.17632/fnpzfw7rr8
title: Data for: Experimental and Modeling Investigations of Dropwise Condensation out of Convective Humid Air Flow

description: Additional figures for the current article
DOI: 10.17632/k3zpmvhhdt
title: childhood diseases dataset

description: Dataset consists of age, sex, weight, height, body temperature, and any records of experiences of the 29 symptoms.
DOI: 10.17632/yw2tzzsznw
title: Estrategia de generación de insumos para la actualización de la política pública de salud mental de la subregión centro del Cauca

description: Esta estrategia se presenta en el marco del proyecto de investigación Centros de escucha: dispositivos comunitarios como estrategias de dinamización de la Política de Salud Mental en Cauca, presentado para el sistema de investigación de la Universidad
Cooperativa de Colombia, campus Popayán.

Surge como producto de la articulación entre la Secretaría de Salud y la Universidad Cooperativa de Colombia, campus Popayán, a partir del reconocimiento de la pertinencia de participar en la actualización de la Política Pública de Salud Mental, reglamentada para Popayán bajo el acuerdo 011 de 2011, que priorizó en su diagnóstico inicial problemáticas relacionadas con el consumo de sustancias psicoactivas, la violencia intrafamiliar, las violencias basadas en género, trastornos mentales y las afectaciones por conflicto armado.
Como estrategias de intervención, la política estableció la consolidación de redes de gestores sociales o agentes comunitarios, el fortalecimiento de abordajes colectivos, implementación de estrategias de pedagogía social y organización comunitaria, la promoción del bienestar emocional y la prevención de la enfermedad.
DOI: 10.6084/m9.figshare.16200711.v1
title: Data and Code for Nsiangani et al., Scientific Reports (2022)

description: Source data and code to generate figures in Nsiangani et al., "Optimizing intact skull intrinsic signal imaging for subsequent targeted electrophysiology across mouse visual cortex," Scientific Reports, 2022.<br>Source data acquired with custom ISI software available at https://github.com/haiderlab/ISI
DOI: 10.6084/m9.figshare.19313822.v1
title: Cognitive Reserve, Resting EEG and Cognition

description: Cognitive reserve (CR) is the ability to adapt cognitive function to resist the onslaught of brain-related injury or the normal aging process. The underlying brain mechanisms of CR through electroencephalogram (EEG) are scarcely reported; moreover, none of them consider dynamic proxy measures of CR. We explored the association of CR with cognition and resting-state EEG in older adults using three of the most representative dynamic proxy measures of CR: intellectual ability, leisure activities, and physical activities. Eighty-eight healthy older adults aged 60-77 (58 female) were selected from previous study data. A hierarchical cluster analysis considering scores on intellectual ability, leisure activities, and physical activities classified the participants into three groups of CR: Leisure-Active (n = 31), Active-Creative (n=27) and Passive-Receptive (n=30). Differences in cognitive performance and the absolute power (AP) on six resting-state EEG factors (beta, alpha1, alpha2, gamma, theta, and delta) were examined between the CR groups. Active-Creative and Leisure-Active groups reported a higher performance on processing speed compared to the Passive-Receptive group. The Active-Creative group reported a higher performance on phonological fluency than the other two groups and showed higher performance on motor programming than the Leisure-Active group. The Leisure-Active group displayed higher AP in alpha1 than the Passive-Receptive group and higher alpha2 than the Active-Creative group. The dynamic proxy variables of CR are differently associated with cognitive performance and resting-state EEG. Implementing leisure and physical activities may promote better cognitive performance through compensation or neural efficiency mechanisms.
DOI: 10.6084/m9.figshare.3564219.v1
title: Appendix C. Figures showing mean age of dominant and co-dominant trees by vegetation zone for low, moderate, and high biomass structural classes in the Pacific Northwest.

description: Figures showing mean age of dominant and co-dominant trees by vegetation zone for low, moderate, and high biomass structural classes in the Pacific Northwest.