cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xl1m7o
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 37.0969438940468",
 "DecimalLatitude is less than 37.6845273470129",
 "DecimalLongitude is greater than -79.1626056047685",
 "DecimalLongitude is less than -78.42366793641"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005069-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzz4zs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Libanechelyidae"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055187-210914110416597/datasets/export for details.
DOI: 10.15468/dl.fissll
title: Occurrence Download

description: A dataset containing 741270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway"
 ]
}

 The dataset includes 741270 records from 908 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005069-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zztna
title: Occurrence Download

description: A dataset containing 1008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Necromys lasiurus (Lund, 1841)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1008 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006400-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftrmdy
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilyophidae"
 ]
}

 The dataset includes 76 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055186-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gauzbs
title: Occurrence Download

description: A dataset containing 59599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sclerolaena R.Br.",
 "Country is Australia"
 ]
}

 The dataset includes 59599 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001663-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcjkqh
title: Occurrence Download

description: A dataset containing 507219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Soricidae"
 ]
}

 The dataset includes 507219 records from 832 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060105-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xat441
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla chaneque Duellman, 1961"
 ]
}

 The dataset includes 152 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001893-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9s2tkf
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lectotypification of names in the genus Lycianthes (Solanaceae)"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130034-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yck25
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ethiopia",
 "OccurrenceStatus is Present",
 "TaxonKey is Rinorea friisii M.G.Gilbert"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084476-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvkpkt
title: Occurrence Download

description: A dataset containing 2920 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Abroscopus albogularis (Moore, 1854)",
 "Year 1972-2022"
 ]
}

 The dataset includes 2920 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217736-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jer9hv
title: Occurrence Download

description: A dataset containing 2707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-25.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Linepithema humile (Mayr, 1868)"
 ]
}

 The dataset includes 2707 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129976-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e24jvg
title: Occurrence Download

description: A dataset containing 3678773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1960-2022"
 ]
}

 The dataset includes 3678773 records from 1835 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217861-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive5361.20240510.9
title: Enterococcus plantarum Švec et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5362.20240510.9
title: Enterococcus lactis Morandi et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.njkgeu
title: Occurrence Download

description: A dataset containing 910 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thoropa taophora (Miranda-Ribeiro, 1923)"
 ]
}

 The dataset includes 910 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022869-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive5363.20240510.9
title: Bavariicoccus seileri Schmidt et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5364.20240510.9
title: Allobaculum stercoricanis Greetham et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5365.20240510.9
title: Bulleidia extructa Downes et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5366.20240510.9
title: Catenibacterium mitsuokai Kageyama and Benno 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5367.20240510.9
title: Erysipelothrix rhusiopathiae (Migula 1900) Buchanan 1918

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5371.20240510.9
title: Erysipelothrix tonsillarum Takahashi et al. 1987

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5373.20240510.9
title: Holdemania filiformis Willems et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5374.20240510.9
title: Turicibacter sanguinis Bosshard et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5375.20240510.9
title: Solobacterium moorei Kageyama and Benno 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5376.20240510.9
title: Sharpea azabuensis Morita et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5377.20240510.9
title: Eggerthia catenaformis (Eggerth 1935) Salvetti et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5378.20240510.9
title: Kandleria vitulina (Sharpe et al. 1973) Salvetti et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5379.20240510.9
title: Sharpea azabuensis Morita et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5380.20240510.9
title: Erythrobacter longus Shiba and Simidu 1982

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5381.20240510.9
title: Erythrobacter litoralis Yurkov et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5382.20240510.9
title: Erythrobacter citreus Denner et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5384.20240510.9
title: Erythrobacter seohaensis Yoon et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5385.20240510.9
title: Erythrobacter flavus Yoon et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5386.20240510.9
title: Erythrobacter vulgaris Ivanova et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5387.20240510.9
title: Erythromicrobium ramosum Yurkov et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5388.20240510.9
title: Porphyrobacter neustonensis Fuerst et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5391.20240510.9
title: Porphyrobacter sanguineus (ex Ahrens and Rheinheimer 1968) Hiraishi et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5392.20240510.9
title: Porphyrobacter tepidarius Hanada et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5393.20240510.9
title: Porphyrobacter cryptus da Costa et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5394.20240510.9
title: Porphyrobacter donghaensis Yoon et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5396.20240510.9
title: Porphyrobacter dokdonensis Yoon et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5397.20240510.9
title: Altererythrobacter indicus Ramesh Kumar et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5398.20240510.9
title: Altererythrobacter marensis Seo and Lee 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5401.20240510.9
title: Acetobacterium wieringae Braun and Gottschalk 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5402.20240510.9
title: Acetobacterium woodii Balch et al. 1977

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5407.20240510.9
title: Acetobacterium paludosum Kotsyurbenko et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5409.20240510.9
title: Acetobacterium bakii Kotsyurbenko et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5410.20240510.9
title: Acetobacterium dehalogenans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5412.20240510.9
title: Alkalibacter saccharofermentans Garnova et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5413.20240510.9
title: Anaerofustis stercorihominis Finegold et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5414.20240510.9
title: Eubacterium barkeri (Stadtman et al. 1972) Collins et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5415.20240510.9
title: Peptoclostridium acidaminophilum (Zindel et al. 1989) Galperin et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5417.20240510.9
title: Holdemanella biformis (Eggerth 1935) De Maesschalck et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5418.20240510.9
title: Eubacterium brachy Holdeman et al. 1980

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5420.20240510.9
title: Eubacterium callanderi Mountfort et al. 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5421.20240510.9
title: Clostridium combesii (Prévot and Laplanche 1947) Bernard et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.13740083
title: Image data of co-localization of IgG and HEV ORF2 protein in a case of hepatitis E-associated kidney disease

description: Image data for a co-localization study of IgG with HEV ORF2 protein in a de novo immune complex-mediated glomerulonephritis (GN) case in a kidney transplant recipient with chronic hepatitis E (Leblond and Helmchen, et al. 2024).  Immunofluorescence images are provided for 25 glomeruli at low magnification (20x, 0.227 micron/pixel) and for 16 glomeruli at high magnification (100x, 0.0454 micron/pixel). For each example glomeruli the green channel represents IgG antibody staining with FITC, and the magenta channel represent anti-HEV ORF2 staining using Alexa Fluor 546.

Methods: 

Mouse monoclonal antibody clone 1E6 against the HEV ORF2 protein was incubated for 1h at a dilution of 1:125 followed by a mix of Alexa Fluor 546-conjugated goat anti-mouse antibody (Invitrogen BV, A11018) and FITC-conjugated Rabbit anti-Human IgG (Gamma chain, Diagnostic Biosystem, F008) for 1hat a dilution of 1:50. Following automated staining, the slides were hand -washed in distilled H2O. Tissue was covered with Vectashield® Antifade Mounting Medium with DAPI (VectorLaboratories, H-1200), covered with a coverslip and stored at 4°C until evaluation.

Immunofluorescence images were acquired with an upright fluorescence microscope (AxioImager.Z2 controlled by ZEN Blue software; 89 North Photofluor LM-75 light source, and Axiocam 503 mono camera; Zeiss, Jena, Germany), equipped with the following objectives: 20x (NA 0.5, Plan-NEOFLUAR), 40x (NA 1.4 oil, Plan-APOCHROMAT), and 100x (NA 1.45 oil, Plan-APOCHROMAT) objectives. This setup provides an excellent spatial resolution (nominally about 200 nm lateral resolution in our study; pixel size was 45.4 nm for 100x objective). High resolution images were taken with the 100x objective using the ApoTome.2 module with deconvolution (grid 5 lp/mm; section thickness 0.7 µm). We used Vysis Abbott Chroma filter sets (Blue: excitation (ex) 335-383 nm, emission (em) 420-470; green: ex 481-507 nm; em 521-551 nm; red: ex 534-556 nm, em 574- 606 nm). Co-localization of IgG and HEV ORF2 staining was quantified using Fiji software (Schindelin et al., 2012) and the JACoP ImageJ plug-in.
DOI: 10.13145/bacdive5423.20240510.9
title: Faecalitalea cylindroides (Rocchi 1908) De Maesschalck et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.13740082
title: Image data of co-localization of IgG and HEV ORF2 protein in a case of hepatitis E-associated kidney disease

description: Image data for a co-localization study of IgG with HEV ORF2 protein in a de novo immune complex-mediated glomerulonephritis (GN) case in a kidney transplant recipient with chronic hepatitis E (Leblond and Helmchen, et al. 2024).  Immunofluorescence images are provided for 25 glomeruli at low magnification (20x, 0.227 micron/pixel) and for 16 glomeruli at high magnification (100x, 0.0454 micron/pixel). For each example glomeruli the green channel represents IgG antibody staining with FITC, and the magenta channel represent anti-HEV ORF2 staining using Alexa Fluor 546.

Methods: 

Mouse monoclonal antibody clone 1E6 against the HEV ORF2 protein was incubated for 1h at a dilution of 1:125 followed by a mix of Alexa Fluor 546-conjugated goat anti-mouse antibody (Invitrogen BV, A11018) and FITC-conjugated Rabbit anti-Human IgG (Gamma chain, Diagnostic Biosystem, F008) for 1hat a dilution of 1:50. Following automated staining, the slides were hand -washed in distilled H2O. Tissue was covered with Vectashield® Antifade Mounting Medium with DAPI (VectorLaboratories, H-1200), covered with a coverslip and stored at 4°C until evaluation.

Immunofluorescence images were acquired with an upright fluorescence microscope (AxioImager.Z2 controlled by ZEN Blue software; 89 North Photofluor LM-75 light source, and Axiocam 503 mono camera; Zeiss, Jena, Germany), equipped with the following objectives: 20x (NA 0.5, Plan-NEOFLUAR), 40x (NA 1.4 oil, Plan-APOCHROMAT), and 100x (NA 1.45 oil, Plan-APOCHROMAT) objectives. This setup provides an excellent spatial resolution (nominally about 200 nm lateral resolution in our study; pixel size was 45.4 nm for 100x objective). High resolution images were taken with the 100x objective using the ApoTome.2 module with deconvolution (grid 5 lp/mm; section thickness 0.7 µm). We used Vysis Abbott Chroma filter sets (Blue: excitation (ex) 335-383 nm, emission (em) 420-470; green: ex 481-507 nm; em 521-551 nm; red: ex 534-556 nm, em 574- 606 nm). Co-localization of IgG and HEV ORF2 staining was quantified using Fiji software (Schindelin et al., 2012) and the JACoP ImageJ plug-in.