cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5812599.v1
title: Additional file 7 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Shared neoantigens. Neoantigens predicted for multiple patients. (CSV 1 kb)
DOI: 10.6084/m9.figshare.5812596
title: Additional file 6 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Signature deconvolutions. Results of mutational signature deconvolution, including a separate analysis of mutations unique to the treated paired samples. (CSV 42 kb)
DOI: 10.6084/m9.figshare.5812596.v1
title: Additional file 6 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Signature deconvolutions. Results of mutational signature deconvolution, including a separate analysis of mutations unique to the treated paired samples. (CSV 42 kb)
DOI: 10.6084/m9.figshare.5812590
title: Additional file 5 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Mutational signatures. COSMIC signatures and extracted chemotherapy signatures. (CSV 5 kb)
DOI: 10.6084/m9.figshare.5812590.v1
title: Additional file 5 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Mutational signatures. COSMIC signatures and extracted chemotherapy signatures. (CSV 5 kb)
DOI: 10.6084/m9.figshare.5812575
title: Additional file 3 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: HLA types. Patient HLA types. (CSV 5 kb)
DOI: 10.6084/m9.figshare.5812575.v1
title: Additional file 3 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: HLA types. Patient HLA types. (CSV 5 kb)
DOI: 10.6084/m9.figshare.5812560
title: Additional file 2 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Mutations. Somatic variants and their read counts, predicted effects, and resulting neoantigens. (CSV 105000 kb)
DOI: 10.6084/m9.figshare.5812560.v1
title: Additional file 2 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Mutations. Somatic variants and their read counts, predicted effects, and resulting neoantigens. (CSV 105000 kb)
DOI: 10.6084/m9.figshare.5812551
title: Additional file 1 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Samples. Sample identifiers, basic clinical and chemotherapy information, specimen purities, mutation and neoantigen burden, contributions of major mutational signatures to mutations and neoantigens, and CIBERSORT immune infiltrate estimates. (CSV 224 kb)
DOI: 10.6084/m9.figshare.5812551.v1
title: Additional file 1 of Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

description: Samples. Sample identifiers, basic clinical and chemotherapy information, specimen purities, mutation and neoantigen burden, contributions of major mutational signatures to mutations and neoantigens, and CIBERSORT immune infiltrate estimates. (CSV 224 kb)
DOI: 10.6084/m9.figshare.5812512
title: Additional file 4 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Complete list of MicroRNA targeters and TF regulators of color modules from Rhesus monkey Intra-Species analysis. A table of all MicroRNA targeters and TF regulators of color modules from Rhesus Intra-species analysis. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5812512.v1
title: Additional file 4 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Complete list of MicroRNA targeters and TF regulators of color modules from Rhesus monkey Intra-Species analysis. A table of all MicroRNA targeters and TF regulators of color modules from Rhesus Intra-species analysis. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.5812494
title: Additional file 3 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Color modules for Human and corresponding TF regulator and MicroRNA targeter where 5hmC is controlledand 5mC is diseased. A table for Generated color modules for human samples where 5hmC is controlled and 5mC is diseased and corresponding predicted TF regulators and miRNAs are also mentioned. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5812494.v1
title: Additional file 3 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Color modules for Human and corresponding TF regulator and MicroRNA targeter where 5hmC is controlledand 5mC is diseased. A table for Generated color modules for human samples where 5hmC is controlled and 5mC is diseased and corresponding predicted TF regulators and miRNAs are also mentioned. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5812485
title: Additional file 2 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Color modules for rhesus and corresponding TF regulator and MicroRNA targeter where 5hmC is controlled and 5mC is diseased. A table of generated color modules for rhesus samples where 5hmC is controlled and 5mC is diseased and corresponding predicted TF regulators and miRNAs are also mentioned. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5812485.v1
title: Additional file 2 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Color modules for rhesus and corresponding TF regulator and MicroRNA targeter where 5hmC is controlled and 5mC is diseased. A table of generated color modules for rhesus samples where 5hmC is controlled and 5mC is diseased and corresponding predicted TF regulators and miRNAs are also mentioned. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5812476
title: MOESM2 of Contrasting development of lysigenous aerenchyma in two rice genotypes under phosphorus deficiency

description: Additional file 2. Plant biomass in hydroponics (TableÂ 1) and plant phenotypes in the field (TableÂ 2).
DOI: 10.6084/m9.figshare.5812476.v1
title: MOESM2 of Contrasting development of lysigenous aerenchyma in two rice genotypes under phosphorus deficiency

description: Additional file 2. Plant biomass in hydroponics (TableÂ 1) and plant phenotypes in the field (TableÂ 2).
DOI: 10.6084/m9.figshare.5812467
title: Additional file 1 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Complete list of MicroRNA targeters and TF regulators of color modules from Human Intra-Species analysis. A table of all MicroRNA targeters and TF regulators of color modules from Human Intra-species analysis. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5812467.v1
title: Additional file 1 of Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus

description: Complete list of MicroRNA targeters and TF regulators of color modules from Human Intra-Species analysis. A table of all MicroRNA targeters and TF regulators of color modules from Human Intra-species analysis. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5812458
title: Additional file 1: of An objective measure for the assessment and management of fluid shifts in acute major burns

description: Acticoat calculator for oedemaâ excel spreadsheet. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5812458.v1
title: Additional file 1: of An objective measure for the assessment and management of fluid shifts in acute major burns

description: Acticoat calculator for oedemaâ excel spreadsheet. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5812413
title: Additional file 1: of Low H2O2 and enhanced oxidative resistance in the diapause-destined pupa of silkworm, Antheraea mylitta (Lepidoptera:Saturniidae) suggest their possible involvement in dormancy and lifespan extension

description: Representative excel data sheet for the respective figures. Data for each figure in the excel sheet provides the individual value, mean value, standard deviation (STDEV) and standard error of mean (SEM) for the measured parameters. Each figure is drawn based on the mean data and standard error of mean. (XLS 38Â kb)
DOI: 10.6084/m9.figshare.5812413.v1
title: Additional file 1: of Low H2O2 and enhanced oxidative resistance in the diapause-destined pupa of silkworm, Antheraea mylitta (Lepidoptera:Saturniidae) suggest their possible involvement in dormancy and lifespan extension

description: Representative excel data sheet for the respective figures. Data for each figure in the excel sheet provides the individual value, mean value, standard deviation (STDEV) and standard error of mean (SEM) for the measured parameters. Each figure is drawn based on the mean data and standard error of mean. (XLS 38Â kb)
DOI: 10.6084/m9.figshare.5812407
title: Additional file 1: Table S1. of Comparative genomics analysis of triatomines reveals common first line and inducible immunity-related genes and the absence of Imd canonical components among hemimetabolous arthropods

description: Immunity-genes reference dataset. Dataset of immunity-genes sequences retrieved from GenBank, VectorBase, UniProt, FlyBase and Ensembl databases and published information used to query for immune-related homologs in TTTs transcriptomes and RPRO, CLEC and ACPI predicted-peptide sets. Table S2. Immune-related homologs involved in immune recognition and activation (PGRPs; GNBPs; Lectins; TEPs; Scavenger receptors; Clip-domain serine-proteases) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S3. Immune-related homologs involved in immune signaling (Toll, Jak-STAT and Imd pathways) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S4. Immune-related homologs involved in immune effectors (antimicrobial peptides; PPOs; nitric oxide synthase; NADPH enzymes) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S5. Immune-related homologs involved in immune regulation (immune negative regulators) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S6. Immune-related homologs involved in antioxidant mechanisms (Catalases; Peroxidases) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S7. Immune-related homologs involved in RNA interference (RNAi machinery components) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S8. Immune-related homologs involved in coagulation (Fondue and Hemolectin proteins) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.5812407.v1
title: Additional file 1: Table S1. of Comparative genomics analysis of triatomines reveals common first line and inducible immunity-related genes and the absence of Imd canonical components among hemimetabolous arthropods

description: Immunity-genes reference dataset. Dataset of immunity-genes sequences retrieved from GenBank, VectorBase, UniProt, FlyBase and Ensembl databases and published information used to query for immune-related homologs in TTTs transcriptomes and RPRO, CLEC and ACPI predicted-peptide sets. Table S2. Immune-related homologs involved in immune recognition and activation (PGRPs; GNBPs; Lectins; TEPs; Scavenger receptors; Clip-domain serine-proteases) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S3. Immune-related homologs involved in immune signaling (Toll, Jak-STAT and Imd pathways) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S4. Immune-related homologs involved in immune effectors (antimicrobial peptides; PPOs; nitric oxide synthase; NADPH enzymes) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S5. Immune-related homologs involved in immune regulation (immune negative regulators) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S6. Immune-related homologs involved in antioxidant mechanisms (Catalases; Peroxidases) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S7. Immune-related homologs involved in RNA interference (RNAi machinery components) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. Table S8. Immune-related homologs involved in coagulation (Fondue and Hemolectin proteins) and their respective transcriptome/genome sequence-IDs in the six hemipteran species. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.5812368
title: Additional file 1: of Bacteriological profile and antibiotic susceptibility pattern of common isolates of neonatal sepsis, Ho Municipality, Ghana-2016

description: Data spreadsheet. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5812368.v1
title: Additional file 1: of Bacteriological profile and antibiotic susceptibility pattern of common isolates of neonatal sepsis, Ho Municipality, Ghana-2016

description: Data spreadsheet. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5812350
title: Additional file 3: Table S2. of Size and sequence polymorphisms in the glutamate-rich protein gene of the human malaria parasite Plasmodium falciparum in Thailand

description: Amino acid sequences and frequency (in %) of AAUs in the R2 region of the GLURP gene in P. falciparum. AAUs were named according to the GLURP sequences of P. falciparum in India [34, 35]. Bold letters indicate the amino acid substitutions that define AAU type (XLS 43Â kb)
DOI: 10.6084/m9.figshare.5812350.v1
title: Additional file 3: Table S2. of Size and sequence polymorphisms in the glutamate-rich protein gene of the human malaria parasite Plasmodium falciparum in Thailand

description: Amino acid sequences and frequency (in %) of AAUs in the R2 region of the GLURP gene in P. falciparum. AAUs were named according to the GLURP sequences of P. falciparum in India [34, 35]. Bold letters indicate the amino acid substitutions that define AAU type (XLS 43Â kb)
DOI: 10.6084/m9.figshare.5812347
title: MOESM1 of Quality factor of a transmission line coupled coplanar waveguide resonator

description: Source code for reproducing the main analytical results. (ZIP 78 kB)
DOI: 10.6084/m9.figshare.5812347.v1
title: MOESM1 of Quality factor of a transmission line coupled coplanar waveguide resonator

description: Source code for reproducing the main analytical results. (ZIP 78 kB)
DOI: 10.6084/m9.figshare.5812335
title: Additional file 2: Table S1. of Size and sequence polymorphisms in the glutamate-rich protein gene of the human malaria parasite Plasmodium falciparum in Thailand

description: The AAU arrangement in 168 alleles of GLURP in P. falciparum isolates worldwide. The capital letters D and E represents the additions of aspartic acid and glutamic acid, respectively, between the repetitive regions (blocks 4–14). The lowercase letters in blocks 4–14 indicate the amino acid repeat unit (see also Additional file 3: Table S2). (XLS 133 kb)
DOI: 10.6084/m9.figshare.5812335.v1
title: Additional file 2: Table S1. of Size and sequence polymorphisms in the glutamate-rich protein gene of the human malaria parasite Plasmodium falciparum in Thailand

description: The AAU arrangement in 168 alleles of GLURP in P. falciparum isolates worldwide. The capital letters D and E represents the additions of aspartic acid and glutamic acid, respectively, between the repetitive regions (blocks 4–14). The lowercase letters in blocks 4–14 indicate the amino acid repeat unit (see also Additional file 3: Table S2). (XLS 133 kb)
DOI: 10.6084/m9.figshare.5812287
title: Additional file 2: of Genome-wide DNA methylation profiling in whole blood reveals epigenetic signatures associated with migraine

description: Differentially methylated regions identified using a sliding window approach and the bumphunter algorithm. This additional file contains genomic regions that were differentially methylated between migraine cases and non-migraine controls in both the sliding window and â bumphunterâ approach. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5812287.v1
title: Additional file 2: of Genome-wide DNA methylation profiling in whole blood reveals epigenetic signatures associated with migraine

description: Differentially methylated regions identified using a sliding window approach and the bumphunter algorithm. This additional file contains genomic regions that were differentially methylated between migraine cases and non-migraine controls in both the sliding window and â bumphunterâ approach. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5812269
title: Additional file 1: of Genome-wide DNA methylation profiling in whole blood reveals epigenetic signatures associated with migraine

description: Differentially methylated regions identified by a sliding window analysis. This file contains the genomic coordinates for each genome-wide significant differentially methylated region, with additional information on: a) the number of CpGs within each region; b) whether the DMR was hypomethylated or hypermethylated; c) the P value and FDR q-value for each DMR; d) the closest gene; e) the beta-value difference for the most significant CpG in the region. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5812269.v1
title: Additional file 1: of Genome-wide DNA methylation profiling in whole blood reveals epigenetic signatures associated with migraine

description: Differentially methylated regions identified by a sliding window analysis. This file contains the genomic coordinates for each genome-wide significant differentially methylated region, with additional information on: a) the number of CpGs within each region; b) whether the DMR was hypomethylated or hypermethylated; c) the P value and FDR q-value for each DMR; d) the closest gene; e) the beta-value difference for the most significant CpG in the region. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5812251
title: Additional file 9: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: FLK results for chromosome 2 analysis without Texel sheep. Regions under selection. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5812251.v1
title: Additional file 9: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: FLK results for chromosome 2 analysis without Texel sheep. Regions under selection. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5812227
title: Additional fileÂ 4: of What are the barriers and facilitators for third sector organisations (non-profits) to evaluate their services? A systematic review

description: contains the extracted data that is analysed throughout the study. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.5812227.v1
title: Additional fileÂ 4: of What are the barriers and facilitators for third sector organisations (non-profits) to evaluate their services? A systematic review

description: contains the extracted data that is analysed throughout the study. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.5812191
title: Additional file 3: Table S2. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Adjusted means for different morphological agronomic traits of the six different qGN4.1 QTL-NILs for each variety along with respective recipient parents in BC2F3 generation. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.5812191.v1
title: Additional file 3: Table S2. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Adjusted means for different morphological agronomic traits of the six different qGN4.1 QTL-NILs for each variety along with respective recipient parents in BC2F3 generation. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.5812164
title: Additional file 4: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: FLK and hapFLK results. FLK and hapFLK regions under selection for FLK and hapFLK results. (XLS 102Â kb)
DOI: 10.6084/m9.figshare.5812164.v1
title: Additional file 4: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: FLK and hapFLK results. FLK and hapFLK regions under selection for FLK and hapFLK results. (XLS 102Â kb)
DOI: 10.6084/m9.figshare.5812137
title: Additional file 12: Table S7. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Number of donor parent genome segments of larger than 0.2Â Mb in the qGN4.1-NILs in recipient genetic backgrounds of 12 different mega varieties of rice. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5812137.v1
title: Additional file 12: Table S7. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Number of donor parent genome segments of larger than 0.2Â Mb in the qGN4.1-NILs in recipient genetic backgrounds of 12 different mega varieties of rice. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5812080
title: Additional file 10: Table S5. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Analysis of all the affymetrix 50Â K SNP calls of 12 RPG along with qGN4.1 QTL-NILs on separate sheets. (XLSX 99942Â kb)
DOI: 10.6084/m9.figshare.5812080.v1
title: Additional file 10: Table S5. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

description: Analysis of all the affymetrix 50Â K SNP calls of 12 RPG along with qGN4.1 QTL-NILs on separate sheets. (XLSX 99942Â kb)
DOI: 10.6084/m9.figshare.5812050
title: Additional file 10: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: Selection signatures with more than one independent SNP. Posterior probabilities for one to 10 independent SNPs. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5812050.v1
title: Additional file 10: of Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

description: Selection signatures with more than one independent SNP. Posterior probabilities for one to 10 independent SNPs. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5812047
title: Additional file 4: of Neoboutonia melleri var velutina Prain: in vitro and in vivo hepatoprotective effects of the aqueous stem bark extract on acute hepatitis models

description: File S4. Raw data from the article. (XLS 569 kb)
DOI: 10.6084/m9.figshare.5812047.v1
title: Additional file 4: of Neoboutonia melleri var velutina Prain: in vitro and in vivo hepatoprotective effects of the aqueous stem bark extract on acute hepatitis models

description: File S4. Raw data from the article. (XLS 569 kb)
DOI: 10.6084/m9.figshare.5811987
title: Human list of RNA-seq datasets before and after hypoxic stress

description: List of NCBI Gene Expression Omnibus (GEO) or EBI ArrayExpress IDs before and after hypoxic stress in human. Gene expression measurement by RNA-seq.
DOI: 10.6084/m9.figshare.5811987.v1
title: Human list of RNA-seq datasets before and after hypoxic stress

description: List of NCBI Gene Expression Omnibus (GEO) or EBI ArrayExpress IDs before and after hypoxic stress in human. Gene expression measurement by RNA-seq.