cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13272839.v1
title: Supplementary Material for: Spontaneous Erosion of Retained Bone Chip into Anal Canal Following Progressive Perineal Urethroplasty with Inferior Pubectomy: Lessons Learnt!

description: We present a never before reported delayed complication of progressive perineal urethroplasty with inferior pubectomy in a young male, where retained bone chip spontaneously erodes through anal canal. Our case cautions urologists doing inferior pubectomy for pelvic fracture urethral distraction defect to make sure that no loose bony fragment is left in the operative field. We also emphasize to make sure to nibble the sharp bony margins of the cut pubic bone after inferior pubectomy so that it will not impinge onto the anterior wall of rectum eliminating the risk of delayed perforation of rectum or anal canal.
DOI: 10.6084/m9.figshare.19199546.v1
title: Antioxidants green tea extract and nordihydroguaiaretic acid confer species and strain specific lifespan and health effects in <i>Caenorhabditis</i> nematodes - Data and Analysis

description: Here we provide the data for the CITP manuscript <b>Antioxidants green tea extract and nordihydroguaiaretic acid confer species and strain specific lifespan and health effects in<i> Caenorhabditis </i>nematodes</b>
DOI: 10.6084/m9.figshare.13077329.v1
title: Large-scale Labeled Faces (LSLF) Dataset.zip

description: Our LSLF dataset consists of 1,195,976 labeled face images for 11,459 individuals. These images are stored in JPEG format with a total size of 5.36 GB. Individuals have a minimum of 1 face image and a maximum of 1,157 face images. The average number of face images per individual is 104. Each image is automatically named as (PersonName VideoNumber FrameNumber ImageNuumber) and stored in the related individual folder.
DOI: 10.6084/m9.figshare.14914737.v3
title: Proportion of stroke types in Madagascar_Medical record data.xlsx

description: Medical record data for Proportion of stroke types in Madagascar: a tertiary-level hospital-based case series by Julia Riedmann, Andriamihaja Flavien Solonavalona, Adriamboahanginiaina Ravosoa Rakotozafy, Solofo Ralamboson, Matthias Endres, Bob Siegerink, Eberhard Siebert, Samuel Knauss, Julius Valentin Emmrich.
DOI: 10.6084/m9.figshare.19071044.v1
title: Scripts and input files

description: These are the scripts to run the analysis and get the figures. get_models.R is an R script for the models and get_figures.R is an R script for the figures.
DOI: 10.6084/m9.figshare.24591180.v1
title: Single cell RNA sequencing identifies CXADR as a fate determinant of the placental exchange surface

description: Tissue formation depends on adequate progenitor cell pool expansion followed by appropriate lineage specification events. Failures in these steps lead to anatomical defects that can have detrimental consequences, in particular when they occur during in utero development. Here, we subjected mouse trophoblast stem cells (TSCs) to targeted differentiation protocols to recapitulate the earliest steps in placenta formation, and followed the early lineage differentiation events by single cell sequencing approaches. 



1. In vitro differentiation of mouse TSCs was induced by inhibition of MEK with PD0325901 (2µM Final) (Inhibit dataset) or withdrawal of the stemness-maintaining components FGF4 and embryonic fibroblast conditioned medium (Remove dataset). Samples were collected at t0 (stem cell state, n=2), 1h (n=4 Inhibit and Remove), 4h (n=4 Inhibit and n=3 Remove), 24h (n=4 Inhibit and n=2 Remove), 36h (n=4 Inhibit and Remove) and 48h (n=4 Inhibit and Remove). Cells were dissociated and single cell barcoded transcriptome libraries were generated using Drop-Seq. Libraries were sequenced across multiple lanes of Illumina Nextseq, HiSeq2500 and HiSeq4000 flow cells in 6 batches. 



We have added Seurat objects of the Inhibit, Remove, t0 and t24 datasets, Monocle gene module results for the Inhibit and Remove datasets and SCENIC regulon results for the Inhibit and Remove dataset. 



2. For the scRNAseq dataset including CXADR KO and WT mTSCs the experiment was repeated and samples at 0h and 24h were collected with 3 independed clones per condition. The cells were processed with the Parse Evercode WT v3 kit according to the manufacturer's instructions and libraries were sequenced on 2 lanes of NovaSeq X 25B flowcell. Sequencing data was analysed on the Trailmaker platfrom (Parse Biosciences, 2024) on 28/08/2024. Cell proportion analysis was performed using propeller from the package speckle.



We have added Seurat objects for the Inhibit and Remove condition, data filtering and analysis settings from the Trailmaker platform, DEG tables for clusters at res. 0.7, input tables for the propeller analysis. We have also added a sample loading table needed to re-run the Parse pipeline. 



3. We also include a table of source data for all bar charts/graphs in the manuscript.
DOI: 10.6084/m9.figshare.25308253.v1
title: Codes_KBAs.zip

description: <b>Effective monitoring of Key Biodiversity Areas (KBAs) in India using remote sensing technology</b>: Google Earth Engine code for extracting data on fire frequency, forest loss, and night-time lights on an annual basis across KBA and ecological sites in India.
DOI: 10.6084/m9.figshare.25904044.v3
title: Genome annotation of <i>Serangium japonicum</i>

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.6084/m9.figshare.26506126.v1
title: Davila Aleman et al 2024 SuppTables EMI

description: The Arctic Ocean is an oligotrophic ecosystem facing escalating threats of oil spills as ship traffic increases owing to climate change-induced sea ice retreat. Biostimulation is an oil spill mitigation strategy that involves introducing bioavailable nutrients to enhance crude oil biodegradation by endemic oil-degrading microbes. For bioremediation to offer a viable response for future oil spill mitigation in extreme Arctic conditions, a better understanding of the effects of nutrient addition on Arctic marine microorganisms is needed. Controlled experiments tracking microbial populations in revealed a significant decline in community diversity together with changes in microbial community composition. Notably, differential abundance analysis highlighted significant enrichment of unexpected genera <i>Lacinutrix</i>,<i>Halarcobacter</i> and Candidatus <i>Pseudothioglobus</i>. These groups have not been associated with hydrocarbon biodegradation until now, despite closer inspection of genomes from closely related isolates confirming the potential for hydrocarbon metabolism. Co-occurrence analysis further revealed significant associations between these genera and known hydrocarbon-degrading bacteria, suggesting potential synergistic interactions in oil biodegradation. While these findings broaden our understanding of how biostimulation promotes enrichment of endemic hydrocarbon-degrading genera, further research is needed to fully assess the suitability of nutrient addition as a stand-alone oil spill mitigation strategy in this sensitive ecosystem.
DOI: 10.6084/m9.figshare.16751869.v1
title: Data files for 'Demography: Fast and Slow'

description: This project includes the data used for the article ‘Demography: Fast and Slow’, accepted for publication in <i>Population and Development Review. </i>See the paper as well as the Appendix: Supplemental Materials for details.<br><br>Here is a brief description of the files containing the estimates of <i>PTR </i>and <i>MST</i> used for the paper. The data (in .csv format) can be downloaded from <i>figshare</i> (doi:10.6084/m9.figshare.16751869)..<b></b>· The file <i>Data_labels.csv</i> contains the country labels used in Figures 2 and 3 in the main paper.<b> </b>· The file <i>Data_paper.csv</i> contains birth, death, immigration and emigration rates, and the derived estimates of country-level <i>PTR</i> and <i>MST</i> used in the paper (five-year intervals between 1990-95 and 2015-20), using Abel-Cohen estimates based on the “Demographic Account Pseudo Bayesian Closed” method. · The file <i>Data_robust.csv</i> is equivalent to <i>Data_paper.csv </i>but it is based on Abel-Cohen “Demographic Account Minimisation Closed” estimates of migratory flows.<b> </b>· The files <i>Data_Italy.csv</i> and <i>Data_Germany.csv </i>contain respectively the data on birth, death, immigration and emigration rates, and the estimates of annual <i>PTR</i> and <i>MST</i> for Italy and Germany.
DOI: 10.6084/m9.figshare.21868203.v1
title: Hasegawa_et_al_MarkRecapture of whitespotted charr

description: This is the fish individual level datasets of study in which examine infection history of parasitic copepods. We especially recorded fork length, body weight, infection intensity and captured section of each fish. Field surveys were conducted from 2020 June to 2021 July.
DOI: 10.6084/m9.figshare.24088194.v2
title: Harmonisation_tables.zipApproaches to pollen taxonomic harmonisation in Quaternary palynologyApproaches to pollen taxonomic harmonisation in Quaternary palynology

description: Seven csv files for each of the harmonisation regions and the shapefile for the Birks et al. article on pollen harmonisation.Seven csv files for each of the harmonisation regions and the shapefile for Birks et al. (2023) Approaches to pollen taxonomic harmonisation in Quaternary palynology. Review pf Palaeobotany and Palynology 319: 104989.
DOI: 10.6084/m9.figshare.14152442.v1
title: Supplementary Material for: Cardiopulmonary Exercise Testing in Combined Pulmonary Fibrosis and Emphysema

description: <b><i>Background:</i></b> Combined pulmonary fibrosis and emphysema (CPFE) is a distinct entity among fibrosing lung diseases with a high risk for lung cancer and pulmonary hypertension (PH). Notably, concomitant PH was identified as a negative prognostic indicator that could help with early diagnosis to provide important information regarding prognosis. <b><i>Objectives:</i></b> The current study aimed to determine whether cardiopulmonary exercise testing (CPET) can be helpful in differentiating patients having CPFE with and without PH. <b><i>Methods:</i></b> Patients diagnosed with CPFE in 2 German cities (Hemer and Greifswald) over a period of 10 years were included herein. CPET parameters, such as peak oxygen uptake (peak VO<sub>2</sub>), functional dead space ventilation (<i>V</i><sub>Df</sub>/<i>V</i><sub>T</sub>), alveolar-arterial oxygen difference (AaDO<sub>2</sub>), arterial-end-tidal CO<sub>2</sub> difference [P(a-ET)CO<sub>2</sub>] at peak exercise, and the minute ventilation-carbon dioxide production relationship (VE/VCO<sub>2</sub> slope), were compared between patients with and without PH. <b><i>Results:</i></b> A total of 41 patients with CPET (22 with PH, 19 without PH) were analyzed. Right heart catheterization was performed in 15 of 41 patients without clinically relevant complications. Significant differences in peak VO<sub>2</sub> (861 ± 190 vs. 1,397 ± 439 mL), VO<sub>2</sub>/kg body weight/min (10.8 ± 2.6 vs. 17.4 ± 5.2 mL), peak AaDO<sub>2</sub> (72.3 ± 7.3 vs. 46.3 ± 14.2 mm Hg), VE/VCO<sub>2</sub> slope (70.1 ± 31.5 vs. 39.6 ± 9.6), and peak P(a-ET)tCO<sub>2</sub> (13.9 ± 3.5 vs. 8.1 ± 3.6 mm Hg) were observed between patients with and without PH (<i>p</i> &lt; 0.001). Patients with PH had significantly higher <i>V</i><sub>Df</sub>/<i>V</i><sub>T</sub> at rest, <i>V</i><sub>T1</sub>, and at peak exercise (65.6 ± 16.8% vs. 47.2 ± 11.6%; <i>p</i> &lt; 0.001) than those without PH. A cutoff value of 44 for VE/VCO<sub>2</sub> slope had a sensitivity and specificity of 94.7 and 72.7%, while a cutoff value of 11 mm Hg for P(a-ET)CO<sub>2</sub> in combination with peak AaDO<sub>2</sub> &gt;60 mm Hg had a specificity and sensitivity of 95.5 and 84.2%, respectively. Combining peak AaDO<sub>2</sub> &gt;60 mm Hg with peak VO<sub>2</sub>/body weight/min &lt;16.5 mL/kg/min provided a sensitivity and specificity of 100 and 95.5%, respectively. <b><i>Conclusion:</i></b> This study provided initial data on CPET among patients having CPFE with and without PH. CPET can help noninvasively detect PH and identify patients at risk. AaDO<sub>2</sub> at peak exercise, VE/VCO<sub>2</sub> slope, peak P(a-ET)CO<sub>2</sub>, and peak VO<sub>2</sub> were parameters that had high sensitivity and, when combined, high specificity.
DOI: 10.6084/m9.figshare.20170874.v3
title: Morpho-Histology and Morphometry of Chicken Testes and Seminiferous Tubules among Yellow-Feathered Broilers of Different Ages

description: 1- Left and right testes morphometric analyzed data 2- Seminiferous tubules morphometric analyzed data 3- Gonadosomatic index (GSI) analzed data <br> <br> During growth among Chickens aged between 1-week-old and 4-month-old. <br> All data were analyzed with SPSS software.
DOI: 10.6084/m9.figshare.28758875.v2
title: Daily Daka

description: The the ongoing digital transformation has accelerated the use of internet technologies in language interpreting education. However, in contrast to various studies on online interpreting teaching in class, research on the out-of-class line is limited. This study addressed this gap by exploring an effective online interpreting format for Chinese BTI(Bachelor of Translation and Interpreting) undergraduates out of their regular scheduled classes. The Daily Daka assignments have been proposed, in which students are required to complete a certain amount of interpreting practices daily within defined criteria and a designated timeframe through active participation in a virtual community. A quasi-experimental comparison design was used to test their feasibility and effectiveness. Sixty third-year BTI undergraduates from a Chinese university participated in the study.
DOI: 10.6084/m9.figshare.16577672.v1
title: cellrank-pancreas.h5ad

description: H5AD file created by following the CellRank basics tutorial
DOI: 10.6084/m9.figshare.3485984.v1
title: Predicting microbial growth in a mixed culture from growth curve data

description: Data for "Predicting microbial growth in a mixed culture from growth curve data", published in PNAS (doi:10.1073/pnas.1902217116).<br>Includes data from three experiments (presented in the manuscript in Figure 2A-C, corresponding to 18-11-15, 14-12-16, and 06-01-16).The "tecan" folder contains:- XLSX files created with Tecan infinite F200 Pro, contain growth curve data.- CSV files created with Plato (http://plato.yoavram.com), contain 96-well plate designsThe "flow" folder contains CSV files summarising results from a flow cytometer that counted the number of green and red cells in a time series of samples taken from the mixed culture well of the experiments.Data analysis for the manuscript was done with a Jupyter Notebook (https://github.com/yoavram/curveball_ms) and the Curveball software package (https://github.com/yoavram/curveball).<br>
DOI: 10.25442/hku.23299982.v1
title: Supporting data for “ACTIVITY AND ENANTIOSELECTIVITY CONTROL IN GOLD-CATALYZED LACTONIZATION AND CYCLOADDITIONS”

description: Dataset (Chapter 3) is the supporting data for ''Recyclable PEGylated N-Heterocyclic Carbene-Gold(I) Complex for Cyclizations in Water''. MALDI-TOF Mass, NMR, ESI-MS, TEM, and UV-Vis data are included. <br> Dataset (Chapter 4) is the supporting data for ''Gold-Catalyzed Desymmetric Lactonization of Alkynylmalonic Acids Enabled by Chiral Bifunctional P,N ligands''. NMR, ESI-MS, HPLC data of substrates and products, X-ray data of gold complex, and DFT calculation of intermediates are included. <br> Dataset (Chapter 5) is the supporting data for ''Gold-Catalyzed Highly Enantioselective Cycloadditions of 1,6-Enynes and 1,6-Diynes Assisted by a Single Hydrogen Bond''. NMR, ESI-MS, HPLC data of substrates and products, and DFT calculation of intermediates are included
DOI: 10.6084/m9.figshare.5840697.v1
title: spectra data of tea plantation

description: Collected with Cubert UHD185 hyperspectral imager mounted on a flying UAV
DOI: 10.6084/m9.figshare.11174141.v3
title: Demographic data

description: Demographic and basic clinical data of patients with chronic heart failure
DOI: 10.6084/m9.figshare.4163235.v1
title: Supplementary Material for: Tissue-Derived Signals for Mesenchymal Stem Cell Stimulation: Role of Cardiac and Umbilical Cord Microenvironments

description: The tissue microenvironment regulates such stem cell behaviors as self-renewal and differentiation. Attempts to mimic components of these microenvironments could provide new strategies for culturing and directing the behavior of stem cells. The aim of the present study was to mimic cardiac and umbilical cord tissue microenvironments in vitro and compare the resulting bone marrow-derived mesenchymal stem cell (BM-MSC) behaviors. We generated tissue microenvironments using conditioned medium (CM) and extracellular matrix (ECM) samples obtained from human heart and umbilical cord tissue explant cultures and by tissue decellularization. Mass spectrometry and immunostaining were used to characterize and determine the specific protein profiles of the ECMs and CMs. We demonstrated that the ECMs and CMs were not cytotoxic to BM-MSCs and could thus be tested via cell culture. The BM-MSCs showed a higher proliferation rate when cultured with umbilical cord-derived CM compared with the other analyzed conditions. Furthermore, the ECMs increased cell adhesion and migration. However, although the conditions tested in this work were able to maintain the viability and affect the proliferation, adhesion and migration of BM-MSCs in vitro, mimicking tissue microenvironments using ECM and CM was not sufficient to induce the cardiomyogenic differentiation of BM-MSCs. The present study provides a thorough characterization of the biological activity of these ECMs and CMs in human BM-MSC cultures.<br>
DOI: 10.6084/m9.figshare.16550118.v1
title: Comparative impact of dietary carbohydrates on the liver transcriptome in two strains of mice

description: Supplemental materials including 6 tables and 7 figures
DOI: 10.6084/m9.figshare.19736443.v1
title: Impact of Covid-19 pandemic and consequent online teaching on medical education: subjective and objective assessment

description: In the current study, we examined the impact of the COVID-19 pandemic and online education on the academic performance of medical students; face-to-face (2019), fully online (2020), and a combination of these methods (2021), collecting data from 324 students. The attached dataset includes characterization of the study participants, self-assessed English skills (reading, writing, speaking, and listening) before and after the course, and academic performance (medical terminology, evidence-based medicine, and final exam) of the students.
DOI: 10.4121/uuid:840f234a-c79c-4a5b-a63b-ea3707d74e2a
title: Data from Figures in the paper: Method for the Detailed Characterization of Cosputtered Inorganic Luminescent Material Libraries

description: This data contains the raw datasets (.csv) files that make up all non-photographed figures in the accompanying article.
DOI: 10.6084/m9.figshare.21393732.v3
title: C-iTRACE ABIO_D14C ATM

description: Atmospheric radiocarbon from an isotope enabled coarse resolution (3˚), ocean-only simulation run from the LGM (22ka) to present day using iPOP2. Data converted from netcdf3 to netcdf4 using Xarray.
DOI: 10.6084/m9.figshare.27633213.v1
title: Data behind Figure 6.3: Raman spectra of pure CH<sub>4</sub>, C<sub>2</sub>H<sub>6</sub>, C<sub>3</sub>H<sub>8</sub>, and N<sub>2</sub> in a range of 2300–3000 cm<sup>-1</sup>

description: <b>Caption:</b> Raman spectra of pure methane, ethane, propane, and nitrogen at LV equilibrium. (a) shows a view of the spectra in a range of 2300–3000 cm<sup>-1</sup>, which encompasses (b) the nitrogen (N<sub>2</sub>) peak at 2327 cm<sup>-1</sup> and (c) a suite of peaks associated with methane (CH<sub>4</sub>), ethane (C<sub>2</sub>H<sub>6</sub>), and propane (C<sub>3</sub>H<sub>8</sub>) between 2840–3000 cm<sup>-1</sup>. The nitrogen spectrum was collected at 70 K and the three alkane spectra were taken at 95 K.<br>Excel spreadsheet contains spectra (with backgrounds removed) of pure methane, ethane, propane, and nitrogen between 2300–3000 cm<sup>-1</sup>.
DOI: 10.6084/m9.figshare.14673054.v1
title: Supplementary Material for: Variation in the Care of Acute Liver Failure: A Survey of Intensive Care Professionals

description: <b><i>Introduction:</i></b> Acute liver failure (ALF) is a rare disease with potentially high mortality. We sought to assess the individual approach to ALF by intensive care unit (ICU) professionals. <b><i>Methods:</i></b> Cross-sectional survey of ICU professionals. Web-based survey capturing data on respondents’ demographics, characteristics of patients with ALF admitted to ICU, and their management. <b><i>Results:</i></b> Among 204 participants from 50 countries, 140 (68.6%) worked in Europe, 146 (71.6%) were intensivists, 142 (69.6%) admitted &lt;25 patients with ALF per year, and 166 (81.8%) reported &lt;25% of patients had paracetamol-related ALF. On patients’ outcomes, 126 (75.0%) reported an emergency liver transplantation (ELT) rate &lt;25% and 140 (73.3%) a hospital mortality rate &lt;50%. The approach to ALF in the ICU varied with age, region, level of training, type of hospital, and etiology (prescribing N-acetylcysteine for paracetamol toxicity, triggers for endotracheal intubation, measurement of and strategies for lowering serum ammonia, extracorporeal device deployment, and prophylactic antibiotics). <b><i>Conclusions:</i></b> The management of patients with ALF by ICU professionals differed substantially concerning the relevant clinical measures taken. Further education and high-quality research are warranted.
DOI: 10.6084/m9.figshare.12628586.v1
title: Data matrix used in this meta-analysis. Effect size (lnRR), variance of lnRR, and moderator variables are given

description: Supplementary material of “Differential responses of litter decomposition to warming, elevated CO2, and changed precipitation regime”
DOI: 10.6084/m9.figshare.28704854.v1
title: New_Luxury_Positions.pdf

description: The study proposes a complex framework of luxury values to identify new market positions in the luxury industry, introducing a value-fusion model based on multidimensional value connectivity, hyper-personalized identity design, and price acceptance mechanisms. Using a multidisciplinary approach integrating aesthetic intelligence, artificial intelligence, and network theory, the research explores profitable growth by maximizing consumer emotions. Reviewing 144 academic sources, it highlights paradoxical luxury values and their roots in metamodern oscillatory dualism, focusing on their identification, systematization, and psychological impacts on consumer experiences. The study examines how value-fusion systems influence consumer perceptions, identity formation, and brand expansion through consumer journey design. Integrating dual values - tradition and innovation, private and communal, physical and digital - is shown to foster competitive market positions. Findings emphasize the importance of value network development and personalized experiences in future luxury industry strategies. The paper highlights the role of technology-driven personalization using authentic data and anticipates that deeper exploration of value fusion and hyper-personalized identity design will point the way for future empirical research directions.