cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5798040
title: Data from Redirected aggression as a conflict management tactic in the social cichlid fish <i>Julidochromis regani</i>

description: Conflict management consists of social behaviours that reduce the costs of conflict among group members. Redirected aggression—that is, when a recently attacked individual attacks a third party immediately after the original aggression—is considered a conflict management tactic, as it may reduce the victim's probability of being the object of further aggression. Redirected aggression has been reported in many vertebrates, but few quantitative studies have been conducted on this behaviour in fish. We examined the function of redirected aggression in <i>Julidochromis regani</i>, a social cichlid fish. Behavioural experiments showed that redirected aggression functioned to divert the original aggressor's attention toward a third party and to pre-empt an attack towards the victim by the third-party individual, specifically among females. We found, however, that redirected aggression did not delay the recurrence of aggression by the original aggressor. These results suggest that a primary function of redirected aggression is to maintain the dominance of its actor against a subordinate occupying an adjacent rank. This study provides the first evidence that redirected aggression functions to manage conflict in social fish.
DOI: 10.6084/m9.figshare.5798040.v1
title: Data from Redirected aggression as a conflict management tactic in the social cichlid fish <i>Julidochromis regani</i>

description: Conflict management consists of social behaviours that reduce the costs of conflict among group members. Redirected aggression—that is, when a recently attacked individual attacks a third party immediately after the original aggression—is considered a conflict management tactic, as it may reduce the victim's probability of being the object of further aggression. Redirected aggression has been reported in many vertebrates, but few quantitative studies have been conducted on this behaviour in fish. We examined the function of redirected aggression in <i>Julidochromis regani</i>, a social cichlid fish. Behavioural experiments showed that redirected aggression functioned to divert the original aggressor's attention toward a third party and to pre-empt an attack towards the victim by the third-party individual, specifically among females. We found, however, that redirected aggression did not delay the recurrence of aggression by the original aggressor. These results suggest that a primary function of redirected aggression is to maintain the dominance of its actor against a subordinate occupying an adjacent rank. This study provides the first evidence that redirected aggression functions to manage conflict in social fish.
DOI: 10.6084/m9.figshare.5798028
title: 'Unconscious' models from Visual processing: conscious until proven otherwise

description: Matlab function for fitting models to hit and false alarm rates assuming unconscious evidence in the discrimination judgements
DOI: 10.6084/m9.figshare.5798028.v1
title: 'Unconscious' models from Visual processing: conscious until proven otherwise

description: Matlab function for fitting models to hit and false alarm rates assuming unconscious evidence in the discrimination judgements
DOI: 10.6084/m9.figshare.5798025
title: Main Analysis from Visual processing: conscious until proven otherwise

description: Matlab file containing data and procedure for initialising analysis/model fitting
DOI: 10.6084/m9.figshare.5798025.v1
title: Main Analysis from Visual processing: conscious until proven otherwise

description: Matlab file containing data and procedure for initialising analysis/model fitting
DOI: 10.6084/m9.figshare.5798019
title: 'Conscious' models from Visual processing: conscious until proven otherwise

description: Matlab function for fitting models to hit and false alarm rates assuming conscious evidence
DOI: 10.6084/m9.figshare.5798019.v1
title: 'Conscious' models from Visual processing: conscious until proven otherwise

description: Matlab function for fitting models to hit and false alarm rates assuming conscious evidence
DOI: 10.6084/m9.figshare.5798013
title: Sequence matrices from Parallel diversifications of <i>Cremastosperma</i> and <i>Mosannona</i> (Annonaceae), tropical rainforest trees tracking Neogene upheaval of South America

description: Sequence matrices analysed
DOI: 10.6084/m9.figshare.5798013.v1
title: Sequence matrices from Parallel diversifications of <i>Cremastosperma</i> and <i>Mosannona</i> (Annonaceae), tropical rainforest trees tracking Neogene upheaval of South America

description: Sequence matrices analysed
DOI: 10.6084/m9.figshare.5798001
title: Supplementary Material for: Bardoxolone Methyl Improves Kidney Function in Patients with Chronic Kidney Disease Stage 4 and Type 2 Diabetes: Post-Hoc Analyses from Bardoxolone Methyl Evaluation in Patients with Chronic Kidney Disease and Type 2 Diabetes Study

description: <b><i>Background:</i></b> Increases in measured inulin clearance, measured creatinine clearance, and estimated glomerular filtration rate (eGFR) have been observed with bardoxolone methyl in 7 studies enrolling approximately 2,600 patients with type 2 diabetes (T2D) and chronic kidney disease (CKD). The largest of these studies was Bardoxolone Methyl Evaluation in Patients with Chronic Kidney Disease and Type 2 Diabetes (BEACON), a multinational, randomized, double-blind, placebo-controlled phase 3 trial which enrolled patients with T2D and CKD stage 4. The BEACON trial was terminated after preliminary analyses showed that patients randomized to bardoxolone methyl experienced significantly higher rates of heart failure events. We performed post-hoc analyses to characterize changes in kidney function induced by bardoxolone methyl. <b><i>Methods:</i></b> Patients in ­BEACON (<i>n</i> = 2,185) were randomized 1: 1 to receive once-daily bardoxolone methyl (20 mg) or placebo. We compared the effects of bardoxolone methyl and placebo on a post-hoc composite renal endpoint consisting of ≥30% decline from baseline in eGFR, eGFR &lt;15 mL/min/1.73 m<sup>2</sup>, and end-stage renal disease (ESRD) events (provision of dialysis or kidney transplantation). <b><i>Results:</i></b> Consistent with prior studies, patients randomized to bardoxolone methyl experienced mean increases in eGFR that were sustained through study week 48. Moreover, increases in eGFR from baseline were sustained 4 weeks after cessation of treatment. Patients randomized to bardoxolone methyl were significantly less likely to experience the composite renal endpoint (hazards ratio 0.48 [95% CI 0.36–0.64]; <i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> Bardoxolone methyl preserves kidney function and may delay the onset of ESRD in patients with T2D and stage 4 CKD.
DOI: 10.6084/m9.figshare.5798001.v1
title: Supplementary Material for: Bardoxolone Methyl Improves Kidney Function in Patients with Chronic Kidney Disease Stage 4 and Type 2 Diabetes: Post-Hoc Analyses from Bardoxolone Methyl Evaluation in Patients with Chronic Kidney Disease and Type 2 Diabetes Study

description: <b><i>Background:</i></b> Increases in measured inulin clearance, measured creatinine clearance, and estimated glomerular filtration rate (eGFR) have been observed with bardoxolone methyl in 7 studies enrolling approximately 2,600 patients with type 2 diabetes (T2D) and chronic kidney disease (CKD). The largest of these studies was Bardoxolone Methyl Evaluation in Patients with Chronic Kidney Disease and Type 2 Diabetes (BEACON), a multinational, randomized, double-blind, placebo-controlled phase 3 trial which enrolled patients with T2D and CKD stage 4. The BEACON trial was terminated after preliminary analyses showed that patients randomized to bardoxolone methyl experienced significantly higher rates of heart failure events. We performed post-hoc analyses to characterize changes in kidney function induced by bardoxolone methyl. <b><i>Methods:</i></b> Patients in ­BEACON (<i>n</i> = 2,185) were randomized 1: 1 to receive once-daily bardoxolone methyl (20 mg) or placebo. We compared the effects of bardoxolone methyl and placebo on a post-hoc composite renal endpoint consisting of ≥30% decline from baseline in eGFR, eGFR &lt;15 mL/min/1.73 m<sup>2</sup>, and end-stage renal disease (ESRD) events (provision of dialysis or kidney transplantation). <b><i>Results:</i></b> Consistent with prior studies, patients randomized to bardoxolone methyl experienced mean increases in eGFR that were sustained through study week 48. Moreover, increases in eGFR from baseline were sustained 4 weeks after cessation of treatment. Patients randomized to bardoxolone methyl were significantly less likely to experience the composite renal endpoint (hazards ratio 0.48 [95% CI 0.36–0.64]; <i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> Bardoxolone methyl preserves kidney function and may delay the onset of ESRD in patients with T2D and stage 4 CKD.
DOI: 10.6084/m9.figshare.5797977.v1
title: A New Hybrid Citation-Text Model for Scientific Document Clustering

description: this is the raw data of the manuscript "a new hybrid citation-text model for scientific document clustering." The data contain two parts. One is the files in xml format, which are download from PMC database. The other is the file in txt format that contains a list of pmid of documents used in the manuscript.
DOI: 10.6084/m9.figshare.5797977.v3
title: Clustering Scientific Document Based on an Extended Citation Model

description: This is the raw data of the manuscript "clustering scientific document based on an extended citation model." The data contain two parts. One is the files in xml format, which are download from PMC database. The other is the file in txt format that contains a list of pmid of documents used in the manuscript. People could also downloade these data according to the method introduced in the manuscript.
DOI: 10.6084/m9.figshare.5797977.v2
title: Clustering Scientific Document Based on an Extended Citation Model

description: This is the raw data of the manuscript "clustering scientific document based on an extended citation model." The data contain two parts. One is the files in xml format, which are download from PMC database. The other is the file in txt format that contains a list of pmid of documents used in the manuscript. People could also downloade these data according to the method introduced in the manuscript.
DOI: 10.6084/m9.figshare.5797887
title: Core temperatures of the 15 volunteers

description: Core temperatures of participants before and after exposure to excessive heat.
DOI: 10.6084/m9.figshare.5797887.v1
title: Core temperatures of the 15 volunteers

description: Core temperatures of participants before and after exposure to excessive heat.
DOI: 10.6084/m9.figshare.5797872
title: EnergySecurity.xlsx

description: data underlying figures and tables of the article Safety along the Energy Chain<br>working paper versionhttps://papers.ssrn.com/sol3/papers.cfm?abstract_id=2630993<br>
DOI: 10.6084/m9.figshare.5797872.v1
title: EnergySecurity.xlsx

description: data underlying figures and tables of the article Safety along the Energy Chain<br>working paper versionhttps://papers.ssrn.com/sol3/papers.cfm?abstract_id=2630993<br>
DOI: 10.6084/m9.figshare.5797872.v3
title: EnergySecurity.xlsx

description: data underlying figures and tables of the article Safety along the Energy Chain<br>working paper versionhttps://papers.ssrn.com/sol3/papers.cfm?abstract_id=2630993<br>
DOI: 10.6084/m9.figshare.5797821
title: Oil Palm Plantation Dataset

description: These data are oil palm plantation data extracted from the Sentinel-1 imagery using FatwaR method.<br>Data consist of:1. Sentinel-1 imagery of study area in .Geotiff format2. Region of Interest (ROI) that used to train the algorithm in .shp format3. Boundary of oil palm plantation that extracted from the Sentinel-1 imagery using the FatwaR method in .shp format
DOI: 10.6084/m9.figshare.5797821.v1
title: Oil Palm Plantation Dataset

description: These data are oil palm plantation data extracted from the Sentinel-1 imagery using FatwaR method.<br>Data consist of:1. Sentinel-1 imagery of study area in .Geotiff format2. Region of Interest (ROI) that used to train the algorithm in .shp format3. Boundary of oil palm plantation that extracted from the Sentinel-1 imagery using the FatwaR method in .shp format
DOI: 10.6084/m9.figshare.5797812
title: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

description: This data has been generated for the publication "Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons". <br>Files include: Sources of genome assembliesPhylogenetic trees (and original fasta files)Annotated transposonsBED files of annotated transposonsStringtie annotation of <i>S. kawagutii</i>
DOI: 10.6084/m9.figshare.5797812.v1
title: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

description: This data has been generated for the publication "Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons". <br>Files include: Sources of genome assembliesPhylogenetic trees (and original fasta files)Annotated transposonsBED files of annotated transposonsStringtie annotation of <i>S. kawagutii</i>
DOI: 10.6084/m9.figshare.5797764
title: Oil Palm Data of Sentinel-1Oil Palm Plantation

description: These data are oil palm plantation data extracted from the Sentinel-1 imagery using FatwaR method.<br>Data consist of:1. Sentinel-1 imagery of study area in .Geotiff format2. Region of Interest (ROI) that used to train the algorithm in .shp format3. Boundary of oil palm plantation that extracted from the Sentinel-1 imagery using the FatwaR method in .shp format
DOI: 10.6084/m9.figshare.5797764.v1
title: Oil Palm Data of Sentinel-1

description: These data are oil palm plantation data extracted from the Sentinel-1 imagery using FatwaR method.<br>Data consist of:1. Sentinel-1 imagery of study area in .Geotiff format2. Region of Interest (ROI) that used to train the algorithm in .shp format3. Boundary of oil palm plantation that extracted from the Sentinel-1 imagery using the FatwaR method in .shp format
DOI: 10.6084/m9.figshare.5797761
title: GWAS result

description: <b>Supplementary Dataset 4. </b>The significant loci in the genome-wide association study of the F<sub>2</sub> population.
DOI: 10.6084/m9.figshare.5797761.v1
title: GWAS result

description: <b>Supplementary Dataset 4. </b>The significant loci in the genome-wide association study of the F<sub>2</sub> population.
DOI: 10.6084/m9.figshare.5797758
title: Can the physical environment itself influence neurological patient activity?

description: <b>Purpose:</b> To evaluate if a changed physical environment following redesign of a hospital ward influenced neurological patient physical and social activity. <b>Methods:</b> A “before and after” observational design was used that included 17 acute neurological patients pre-move (median age 77 (IQR 69–85) years Ward A and 20 post-move (median age 70 (IQR 57–81) years Ward B. Observations occurred for 1 day from 08.00–17.00 using Behavioral Mapping of patient physical and social activity, and location of that activity. Staff and ward policies remained unchanged throughout. An Environmental Description Checklist of each ward was also completed. <b>Results:</b> Behavioral Mapping was conducted pre-/post-move with a total of 801 Ward A and 918 Ward B observations. Environmental Description Checklists showed similarities in design features in both neurological wards with similar numbers of de-centralized nursing stations, however there were more single rooms and varied locations to congregate in Ward B (30% more single-patient rooms and separate allied health therapy room). Patients were alone &gt;60% of time in both wards, although there was more in bed social activity in Ward A and more out of bed social activity in Ward B. There were low amounts of physical activity outside of patient rooms in both wards. Significantly more physical activity occurred in Ward B patient rooms (median = 47%, IQR 14–74%) compared to Ward A (median = 2% IQR 0–14%), Wilcoxon Rank Sum test z = −3.28, <i>p</i> = 0.001. <b>Conclusions:</b> Overall, patient social and physical activity was low, with little to no use of communal spaces. However we found more physical activity in patient rooms in the Ward B environment. Given the potential for patient activity to drive brain reorganization and repair, the physical environment should be considered an active factor in neurological rehabilitation and recovery.Implications for RehabilitationClinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments.Despite architectural design intentions patient and social activity opportunities can be limited.Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this. Clinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments. Despite architectural design intentions patient and social activity opportunities can be limited. Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this.
DOI: 10.6084/m9.figshare.5797758.v2
title: Can the physical environment itself influence neurological patient activity?

description: <b>Purpose:</b> To evaluate if a changed physical environment following redesign of a hospital ward influenced neurological patient physical and social activity. <b>Methods:</b> A “before and after” observational design was used that included 17 acute neurological patients pre-move (median age 77 (IQR 69–85) years Ward A and 20 post-move (median age 70 (IQR 57–81) years Ward B. Observations occurred for 1 day from 08.00–17.00 using Behavioral Mapping of patient physical and social activity, and location of that activity. Staff and ward policies remained unchanged throughout. An Environmental Description Checklist of each ward was also completed. <b>Results:</b> Behavioral Mapping was conducted pre-/post-move with a total of 801 Ward A and 918 Ward B observations. Environmental Description Checklists showed similarities in design features in both neurological wards with similar numbers of de-centralized nursing stations, however there were more single rooms and varied locations to congregate in Ward B (30% more single-patient rooms and separate allied health therapy room). Patients were alone &gt;60% of time in both wards, although there was more in bed social activity in Ward A and more out of bed social activity in Ward B. There were low amounts of physical activity outside of patient rooms in both wards. Significantly more physical activity occurred in Ward B patient rooms (median = 47%, IQR 14–74%) compared to Ward A (median = 2% IQR 0–14%), Wilcoxon Rank Sum test z = −3.28, <i>p</i> = 0.001. <b>Conclusions:</b> Overall, patient social and physical activity was low, with little to no use of communal spaces. However we found more physical activity in patient rooms in the Ward B environment. Given the potential for patient activity to drive brain reorganization and repair, the physical environment should be considered an active factor in neurological rehabilitation and recovery.Implications for RehabilitationClinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments.Despite architectural design intentions patient and social activity opportunities can be limited.Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this. Clinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments. Despite architectural design intentions patient and social activity opportunities can be limited. Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this.
DOI: 10.6084/m9.figshare.5797758.v1
title: Can the physical environment itself influence neurological patient activity?

description: <b>Purpose:</b> To evaluate if a changed physical environment following redesign of a hospital ward influenced neurological patient physical and social activity. <b>Methods:</b> A “before and after” observational design was used that included 17 acute neurological patients pre-move (median age 77 (IQR 69–85) years Ward A and 20 post-move (median age 70 (IQR 57–81) years Ward B. Observations occurred for 1 day from 08.00–17.00 using Behavioral Mapping of patient physical and social activity, and location of that activity. Staff and ward policies remained unchanged throughout. An Environmental Description Checklist of each ward was also completed. <b>Results:</b> Behavioral Mapping was conducted pre-/post-move with a total of 801 Ward A and 918 Ward B observations. Environmental Description Checklists showed similarities in design features in both neurological wards with similar numbers of de-centralized nursing stations, however there were more single rooms and varied locations to congregate in Ward B (30% more single-patient rooms and separate allied health therapy room). Patients were alone &gt;60% of time in both wards, although there was more in bed social activity in Ward A and more out of bed social activity in Ward B. There were low amounts of physical activity outside of patient rooms in both wards. Significantly more physical activity occurred in Ward B patient rooms (median = 47%, IQR 14–74%) compared to Ward A (median = 2% IQR 0–14%), Wilcoxon Rank Sum test z = −3.28, <i>p</i> = 0.001. <b>Conclusions:</b> Overall, patient social and physical activity was low, with little to no use of communal spaces. However we found more physical activity in patient rooms in the Ward B environment. Given the potential for patient activity to drive brain reorganization and repair, the physical environment should be considered an active factor in neurological rehabilitation and recovery.Implications for RehabilitationClinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments.Despite architectural design intentions patient and social activity opportunities can be limited.Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this. Clinicians should include consideration of the impact of physical environment on physical and social activity of neurological patients when designing therapeutic rehabilitation environments. Despite architectural design intentions patient and social activity opportunities can be limited. Optimal neurological patient neuroplasticity and recovery requires sufficient environmental challenge, however current hospital environments for rehabilitation do not provide this.
DOI: 10.6084/m9.figshare.5797755
title: Analysis of skin pigmentation

description: Correlation analysis for skin color (L*), melanocytes ratio and melanin concentration
DOI: 10.6084/m9.figshare.5797755.v1
title: Analysis of skin pigmentation

description: Correlation analysis for skin color (L*), melanocytes ratio and melanin concentration
DOI: 10.6084/m9.figshare.5797749
title: Measurement of L value in tissue engineering skin

description: Measurement of L value in tissue engineering skin