cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5290/4560003
title: Low cycle fatigue - strain control test data for 316L a material at 300 °C (specimen identifier UOC3)

description: Data created at the University of Cantabria, Spain during the Horizon 2020 INCEFA-SCALE project on increasing safety in NPPs by covering gaps in environmental fatigue assessment, focusing on gaps between laboratory data and component scale (see https://cordis.europa.eu/project/id/945300 for details). This project has received funding from the Euratom research and training programme 2014-2018 under grant agreement No 945300.
DOI: 10.5290/4860115
title: General Corrosion test data for ER 316L sa wm - sj material at 480 °C (specimen identifier 30119)

description: Data created by ENEA, Italy during the Horizon 2020 GEMMA project on GenIV materials maturity, including test results from an SSRT round-robin on EUROTRANS/DEMETRA T91 in Pb at 400°C. This project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 755269.
DOI: 10.5290/1070008
title: Low cycle fatigue - strain control test data for AISI 304L ar material at 300 °C (specimen identifier 185.1.12)

description: Data created at IRSN, France for a national R&D project on fatigue life of stainless steel 304L and Ni-based alloy 690 in air and PWR water.
DOI: 10.5290/4580008
title: Low cycle fatigue - strain control test data for 316L a material at 300 °C (specimen identifier UJV-2)

description: Data created at ÚJV Řež, Czech Republic during the Horizon 2020 INCEFA-SCALE project on increasing safety in NPPs by covering gaps in environmental fatigue assessment, focusing on gaps between laboratory data and component scale (see https://cordis.europa.eu/project/id/945300 for details). This project has received funding from the Euratom research and training programme 2014-2018 under grant agreement No 945300.
DOI: 10.5290/4580009
title: Low cycle fatigue - strain control test data for 316L a material at 25 °C (specimen identifier UJV-8)

description: Data created at ÚJV Řež, Czech Republic during the Horizon 2020 INCEFA-SCALE project on increasing safety in NPPs by covering gaps in environmental fatigue assessment, focusing on gaps between laboratory data and component scale (see https://cordis.europa.eu/project/id/945300 for details). This project has received funding from the Euratom research and training programme 2014-2018 under grant agreement No 945300.
DOI: 10.15468/dl.c69nu2
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dreissena bugensis)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 2016",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
}

 The dataset includes 52 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033570-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13734175
title: BOS Kemdikbud
DOI: 10.15468/dl.rtn6c6
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cochranella euknemos (Savage & Starrett, 1967)"
 ]
}

 The dataset includes 131 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001600-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzf7tv
title: Occurrence Download

description: A dataset containing 1806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Neotoma magister Baird, 1857"
 ]
}

 The dataset includes 1806 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001601-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12681123
title: Comprehensive Datasets for RNA Design, Machine Learning and Beyond

description: This dataset addresses the need for a new community-wide standard benchmark specifically designed for RNA design and RNA modeling algorithms based on our previous experience. It is a very large, comprehensive, and general-purpose dataset containing over 15 million secondary structures with lengths ranging from 7 to 10,098. Our focus was mainly on multi-branched loops, which are often challenging to predict accurately. Consequently, this dataset encompasses a diverse range of complex motifs, from internal loops to n-way junctions (loops with n outgoing helices, where n ≥ 3), all extracted from RNA structures available in the RNAsolo and Rfam databases.
DOI: 10.5281/zenodo.14943289
title: Comprehensive Datasets for RNA Design, Machine Learning and Beyond

description: This repository contains a comprehensive collection of RNA multi-loops extracted from major RNA databases, along with benchmark results for various RNA design algorithms. The resource is intended to facilitate research and development in RNA design, particularly for multi-loop structures.
DOI: 10.15468/dl.khbwp9
title: Occurrence Download

description: A dataset containing 2359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Spilogale putorius (Linnaeus, 1758)"
 ]
}

 The dataset includes 2359 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001603-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6bwmy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cynogale bennettii Gray, 1837)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016172-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ybqp6g
title: Occurrence Download

description: A dataset containing 3357341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida (Harv.) Suringar)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3357341 records from 280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016142-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhjajr
title: Occurrence Download

description: A dataset containing 2706 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachypterus glaber"
 ]
}

 The dataset includes 2706 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049553-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74hs32
title: Occurrence Download

description: A dataset containing 1836843 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anas acuta",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 1836843 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049461-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8w9ghx3km
title: Treefrogs adjust their acoustic signals in response to harmonics structure of intruder calls

description: Spectral properties of animal acoustic signals may help individuals to
 assess the characteristics of rivals and to adjust their competitive
 strategies in territorial disputes. Thus, we hypothesize that the
 distribution of energy across frequency bands in anuran calls determine
 behavioral responses in male-male competition. Using playback experiments,
 we investigated the relevance of the harmonic calls in the acoustic
 communication of the treefrog Dendropsophus minutus. We exposed
 territorial males to three synthetic acoustic stimuli composed of
 aggressive notes: (1) standard call (all harmonics and peak frequency
 corresponding to the second band); (2) inverted-energy call (all harmonics
 and peak frequency corresponding to the first band); and (3)
 concentrated-energy call (all energy contained in the second harmonic).
 Males responded aggressively to all stimuli, mainly by increasing the rate
 and duration of their aggressive notes. However, when exposed to stimuli
 with different harmonic configurations, males changed the harmonic
 structure of their own calls, emitting more A- and B-notes with peak power
 in the fundamental frequency, particularly when exposed to the
 concentrated-energy call. Our results suggest that male frogs may use the
 harmonic structure of calls to assess opponents and modulate territorial
 and aggressive behavior, triggering complex acoustic adjustments. This
 study contributes to our knowledge about the functions of acoustic traits
 in amphibian social interactions, and particularly of the presence of
 harmonics that has received less attention compared to other acoustic
 properties in the study of animal acoustic communication.
DOI: 10.5061/dryad.5mkkwh74d
title: Good vs poor responder RNAseq transcriptome profiles in DBA/2J mice

description: Major depressive disorder is the most prevalent mental illness worldwide,
 still its pharmacological treatment is limited by various challenges, such
 as the large heterogeneity in treatment response and the lack of insight
 into the neurobiological pathways underlying this phenomenon. To decode
 the molecular mechanisms shaping antidepressant response and to
 distinguish those from general paroxetine effects, we used a previously
 established approach targeting extremes (i.e. good vs. poor responder
 mice). Transcriptome profiling on micro-dissected DG granule cells as well
 as on peripheral blood samples was performed to i) reveal celltype
 specific changes in paroxetine-induced gene expression (paroxetine vs.
 vehicle) and ii) to identify molecular signatures of treatment response
 within a cohort of paroxetine-treated animals. In this datasheet, we
 provide the mapped and norm-counted RNAseq results of our experiments in
 an user-friendly excel file.
description: NGS library prep
 was performed with Illumina's TruSeq stranded
 Total RNA LT Sample Prep Kit following Illumina’s standard protocol (Part
 #15031048 Rev. E). Libraries were prepared with a
 starting amount of 114ng and amplified in 15 PCR
 cycles. Libraries were profiled in a DNA 1000 chip on a 2100 Bioanalyzer
 (Agilent technologies) and quantified using the
 Qubit dsDNA HS Assay Kit, in a Qubit 2.0
 Fluorometer (Life technologies). All libraries
 were pooled together in equimolar ratio and
 sequenced on 8 NextSeq 500 Highoutput FC, SR for
 1x 75 cycles plus 16 cycles for the index reads (8
 + 8), obtaining on average 40 million reads per library.
 RNAseq raw fastq files were aligned to the mouse
 reference genome (mm9) using TopHat and the
 transcript count was calculated using HTSeq. A principle component
 analysis was applied to exclude gene expression
 outliers. Based on transcript count, differentially
 expressed genes (DEGs) across the conditions were
 identified using DESeq package. The expression
 cutoff of the genes were defined based on the density plot of
 log2
 normalized read
 count. The criteria for the significant
 differential expression was defined as the padj &lt; 0.05
 and the absolute
 log2-fold change more than 0.58, and the average normalized read count larger than the expression cutoff.
description: The provided excel file contains the mapping statistics as well
 as the norm count data of the complete RNAseq dataset.
DOI: 10.5061/dryad.x95x69pgv
title: Contrasting fungal responses to wildfire across different ecosystem types

description: We took topsoil samples in burned and unburned areas across two California
 ecosystem types (Sonoma, California, United States) with differing fire
 ecologies in the immediate aftermath of a damaging wildfire in
 2017. From our soil samples, we extracted DNA, amplified and
 sequenced fungal communities, and also measured chemistry (C%, N%
 and pH). Soil fungal communities of fire‐dependent oak
 woodlands differ from those of neighbouring mixed evergreen
 forests. The latter are more strongly altered compositionally by fire than
 the former. This repository contains code to run the analyses we presented
 in the associated paper (doi: 10.1111/mec.15767), as well as a phyloseq
 object with the molecular data and a few CSVs with the sample metadata.
DOI: 10.5061/dryad.18931zcvz
title: Quantitative trait locus analysis of parasitoid counteradaptation to symbiont-conferred resistance

description: Insect hosts and parasitoids are engaged in an intense struggle of
 antagonistic coevolution. Infection with heritable bacterial endosymbionts
 can substantially increase the resistance of aphids to parasitoid wasps,
 which exerts selection on parasitoids to overcome this symbiont-conferred
 protection (counteradaptation). Experimental evolution in the laboratory
 has produced counteradapted populations of the parasitoid wasp Lysiphlebus
 fabarum. These populations can parasitize black bean aphids (Aphis fabae)
 protected by the bacterial endosymbiont Hamiltonella defensa, which
 confers high resistance against L. fabarum. We used two experimentally
 evolved parasitoid populations to study the genetic architecture of the
 counteradaptation to symbiont-conferred resistance by QTL analysis. With
 simple crossing experiments we showed that the counteradaptation is a
 recessive trait depending on the maternal genotype. Based on these
 results, we designed a customized crossing scheme to genotype a mapping
 population phenotyped for the ability to parasitize Hamiltonella-protected
 aphids. Using 1835 SNP markers obtained by ddRAD sequencing, we
 constructed a high-density linkage map consisting of six linkage groups
 (LGs) with an overall length of 828.3 cM and an average marker spacing of
 0.45 cM. We identified a single QTL associated with the counteradaptation
 to Hamiltonella in L. fabarum on linkage group 2. Out of 120 genes located
 in this QTL, several genes encoding putative venoms may represent
 candidates for counteradaptation, as parasitoid wasps inject venoms into
 their hosts during oviposition.
description: To reproduce these analyses, follow the instructions in the
 README files.
DOI: 10.5061/dryad.fj6q573ss
title: Preparation and performance of Al3+-doped BiVO4 semiconductor photocatalysts

description: The xAl3+/BiVO4 (x=0, 1%, 2%, 5%, 10%) semiconductor composite photocatalysts were successfully prepared by hydrothermal method, and the removal efficiency of organic pollutants was improved in different degrees under the conditions of visible light irradiation. The results showed that proper Al3+ doping could improve the morphology of BiVO4, narrow the band gap and expand the absorption range of visible light. Meanwhile, Al3+ acted as a capture center for photogenerated electrons, reducing the recombination rate of the photogenerated electron-hole pair. When the doping amount of Al3+ was 1%, the photocatalytic activity was maximized, and the removal rate of RhB within 90min was as high as 96%, this was an improvement of about 43% compared to pure BiVO4. In the whole reaction system, e-, h+ and ·OH were the main active species, contributing 71.92%, 18.45% and 6.53% to the degradation of RhB, respectively.
DOI: 10.5061/dryad.kkwh70s3m
title: Tactic-specific antimicrobial activity suggests a parental care function for accessory glands in a marine toadfish

description: Males of some species possess extra reproductive organs called accessory
 glands which are outgrowths of the testes or sperm duct. These organs have
 a well-established role in reproduction; however, they also appear to have
 other important functions that are less understood. Here we investigate
 the function of the highly complex accessory glands of a marine toadfish,
 Porichthys notatus, a fish with two reproductive male types: large
 care-providing ‘guarder’ males and small non-caring ‘sneaker’ males. While
 both male types have accessory glands, guarder male accessory glands are
 much larger relative to their body size. We show that accessory gland
 fluids strongly inhibit the growth of bacterial genera associated with
 unhealthy eggs and have no effect on the growth of strains isolated from
 healthy eggs. This antibacterial effect was particularly pronounced for
 extracts from guarder males. Furthermore, we demonstrate that both healthy
 and unhealthy plainfin midshipman eggs have diverse but distinct microbial
 communities that differ in their composition and abundance. The highly
 specific inhibitory capacity of accessory gland fluid on bacteria from
 unhealthy eggs was robust across a wide range of ecologically relevant
 temperatures and salinities. Collectively, these ecological and molecular
 observations suggest a care function for the accessory gland, mediated by
 antimicrobial agents.
description: Please refer to main manuscript and supplementary materials for
 methodology (DOI:10.1098/rspb.2020.2873).
DOI: 10.5061/dryad.573n5tb66
title: Fungal sporocarps house diverse and host-specific communities of fungicolous fungi

description: Sporocarps (fruit bodies) are the sexual reproductive stage in the life
 cycle of many fungi. They are highly nutritious and consequently
 vulnerable to grazing by birds and small mammals, and invertebrates, and
 can be infected by microbial and fungal parasites and pathogens. The
 complexity of communities thriving inside sporocarps is largely unknown.
 In this study, we revealed the diversity, taxonomic composition and
 host-preference of fungicolous fungi (i.e fungi that feed on other fungi)
 in sporocarps. We carried out DNA metabarcoding of the ITS2 region from
 176 sporocarps of 11 wood-decay fungal host species, all collected within
 a forest in northeast Finland. We assessed the influence of sporocarp
 traits, such as lifespan, morphology and size, on the fungicolous fungal
 community. The level of colonisation by fungicolous fungi, measured as the
 proportion of non-host ITS2 reads, varied between 2.8-39.8% across the 11
 host species and was largely dominated by Ascomycota. Host species was the
 major determinant of the community composition and diversity of
 fungicolous fungi, suggesting that host adaptation is important
 for many fungicolous fungi. Furthermore, the alpha-diversity was
 consistently higher in short-lived and resupinate sporocarps compared to
 long-lived and pileate ones, perhaps due to a more hostile environment for
 fungal growth in the latter too. The fungicolous fungi represented
 numerous lineages in the fungal tree of life, among which a significant
 portion was poorly represented with reference sequences in
 databases. 
description: The raw data<b> </b>
 <b>"</b><b>rawdata_metabarcodingITS2"</b>, which has been generated from the metabarcoding of the ITS2 region amplified with  gITS7 and ITS4 primers for 192 samples processed with 2 *96 unique barcodes, PE sequenced in one MiSeq Illumina lane (StarSeq, Germany) to generate 2 x 300 bp reads. The raw sequencing data is available in the folder "Issakka-ITS_rawdata". 
description: A README file is provided and accessile upon down of the
 data. Data submission accompanying the article
 "Fungal sporocarps house diverse and host-specific communities of
 fungicolous fungi." The data is structured into 2
 sections: 1- The rawdata availble in the directory
 ""Issakka-ITS_rawdata". 2-
 FungicolousFungi that contains 2 dsub-directories + README file 
 The bioinformatics filtering of the OTU table, the mapping files
 for demultiflexing the rawdata, the scripts and input and output
 files.
DOI: 10.5061/dryad.1jwstqjt6
title: Survival of workers and queens of the ant Temnothorax nylanderi depending on infection with the cestode Anomotaenia brevis

description: Parasites can mediate severe fitness costs and are thus important
 selective forces shaping the evolution of host phenotypes. Social insects
 are hosts for a diverse group of parasites, but their impact on the
 phenotypic traits of their social hosts is still poorly understood. Here,
 we tracked the survival of tapeworm-infected ant workers, their uninfected
 nestmates and of ants from unparasitized colonies. Our three-year study on
 the ant Temnothorax nylanderi, the intermediate host of the cestode
 Anomotaenia brevis, revealed a prolonged lifespan of infected workers
 compared to their healthy peers. Indeed, their survival rates resembled
 those of queens, whose lifespan can reach two decades. In contrast,
 uninfected workers suffered from increased mortality compared to workers
 from unparasitized colonies. Infected workers exhibit a metabolic rate and
 lipid content similar to young workers and they receive more social care
 than uninfected workers and queens. This increased attention could be
 mediated by their chemical profile, which we show to be more attractive.
 In conclusion, our study demonstrates an extreme lifespan extension in a
 social host following tapeworm infection. The long-lived infected ant
 workers exhibit many traits typical for young workers and future studies
 will tell how parasite infection alters the molecular regulation of aging.
description: Long-term survival data