cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/tedy1-kkk23
title: CB15N Sacculus

description: C. crescentus CB15N sacculus .
description: <strong>Tilt Series Date:</strong> 2007-05-04</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown to exponential phase in PYE; Purified by hot SDS</p>
<strong>Sample Preparation:</strong> C-flat 2/2, BSA treated 10nm gold, 100% humidity, -4mm offset,</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-05-04-10/rawdata/</p>CB15N_10.mrc,  Tilt Series (Pixel Size 0.96 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-05-04-10/rawdata/CB15N_10.mrc"
        > <i class="download icon"></i> Download </a></p>

        CB15N_10.rec,  Reconstruction (Pixel Size 0.96 nm), 586.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-05-04-10/3dimage_3068/CB15N_10.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ahqx6-3wv86
title: spore16

description: sporulating cell .
description: <strong>Tilt Series Date:</strong> 2008-07-02</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Anaerobic growth on CO2+glu</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-07-02-16/rawdata/</p>spore16.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-07-02-16/rawdata/spore16.mrc"
        > <i class="download icon"></i> Download </a></p>

        spore16_part122_22.rec,  Reconstruction (Pixel Size 1.922 nm), 891.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-07-02-16/3dimage_26120/spore16_part122_22.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hqzdy-tqh79
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C126
description: <strong>Tilt Series Date:</strong> 2012-04-28</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-04-28-31/3dimage_68635/</p>12apr28_C126_2_pNLDN_COS7_AT5BT1_0002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-04-28-31/3dimage_68635/12apr28_C126_2_pNLDN_COS7_AT5BT1_0002_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12apr28_C126_2_pNLDN_COS7_AT5BT1_0002.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-04-28-31/rawdata/12apr28_C126_2_pNLDN_COS7_AT5BT1_0002.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3gdaq-ejy32
title: Pseudoalteromonas Iuteoviolacea MP126

description: Chloroform purification from P Iuteo DvipABhcpI Dbact2
description: <strong>Tilt Series Date:</strong> 2013-07-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Pseudoalteromonas luteoviolacea</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: 10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> purified and processed by Gregor, Collaboration with Newman lab</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Chloroform Purification</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, Yi-Wei1</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-7/rawdata/</p>2013_07_10_mp130_0023.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-7/rawdata/2013_07_10_mp130_0023.mrc"
        > <i class="download icon"></i> Download </a></p>

        2013_07_10_mp130_0023_2k_secs_full.rec,  Reconstruction (Pixel Size 1.31 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-7/3dimage_28910/2013_07_10_mp130_0023_2k_secs_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/m6n7g-82a92
title: HUVECs 24h PI pNLBglI

description: single tilt. constant angular increment, step: 1.0. tilt range: (-60, 60).         dosage: 150/A2. defocus: -6um. magnification: 6500
description: <strong>Tilt Series Date:</strong> 2013-04-30</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 6500x. </p>
<strong>Microscope:</strong> UCLA Titan</p>
<strong>Acquisition Software:</strong> FEIbatchtomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> FEIbatchtomo</p>
<strong>Collaborators and Roles:</strong> Collected at UCLA with FEI Batchtomo</p>
<strong>Sample Preparation:</strong> HUVECs imaged 24 hours after infection with pNLBglI. The goal is to image maturing HIV at the edge of infected cells.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-04-30-25/rawdata/</p>13apr26_tomo_4.mrc,  Tilt Series (Pixel Size 1.35 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-04-30-25/rawdata/13apr26_tomo_4.mrc"
        > <i class="download icon"></i> Download </a></p>

        13apr26_tomo_4_part121_16.rec,  Reconstruction (Pixel Size 2.7 nm), 629.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-04-30-25/3dimage_26341/13apr26_tomo_4_part121_16.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cxh4c-8mp63
title: COS7 tfx CHMP4A and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing CHMP4A and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4B (E235Q) expression constructs provided by W.Sundquist (Utah)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-14/rawdata/</p>12mar13_c121_1_Cos74ADN_AT1bt1_0008.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-14/rawdata/12mar13_c121_1_Cos74ADN_AT1bt1_0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        12mar13_c121_1_Cos74ADN_AT1bt1_0008_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-14/3dimage_17801/12mar13_c121_1_Cos74ADN_AT1bt1_0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29991682
title: <b>Graph Visualization and Centrality Analysis of Discrete Variables Correlation from Whole-Body Center of Mass Movement During Standard MVJ</b>

description: This dataset presents the graphs of statistically significant correlations (p&lt;0.05) between kinematic and dynamic variables from whole-body (WB) center of mass (CoM) movement on different impulse phases of standard maximum vertical jumps (MVJ) with long countermovement (CM) at countermovement jumps (CMJ), short CM at drop jumps (DJ) from 40 cm step and squat jump (SJ) with no CM. A total of fifty-three kinematic and dynamic variables were extracted from each subject highest standard MVJ of SJ, CMJ and DJ of one hundred and ninety-eight trial tests performed by a teste group (G1) of untrained (U) sample composed by a group of six voluntary students of sports and physical education degree, ages (21.5 ± 1.4) years, (76.7 ± 9.3) kg mass and (1.79 ± 0.06) m height and a control group (G2) of sixteen trained athletes of the Portuguese male volleyball team, ages (21.4 ± 3.1) years, (85.2 ± 5.8) kg mass and (1.93 ± 0.04) m height. Each subject performed a total of 3 SJ, 3 CMJ and 3 DJ and the best of each subject SJ, CMJ and DJ was selected based on higher flight time. Selected variables were grouped on three complementary communities of (i) force-time-impulse, (ii) force-velocity-power, and (iii) force-displacement-work during WB CoM vertical displacement at different MVJ, according to their original physical quantity. Kinematic and dynamic variables were bivariate correlated at untrained and trained groups for each MVJ type, SJ, CMJ, DJ, and variable community (i, ii and iii). Statistically significant correlations were detected at 5% significance with node centrality and preferential attachment assessed through graph density. Positive statistically significant (p&lt;0.05) correlations are represented by solid lines, whereas negative statistically significant (p&lt;0.05) correlations are represented by dashed lines.
DOI: 10.6084/m9.figshare.29991682.v1
title: <b>Graph Visualization and Centrality Analysis of Discrete Variables Correlation from Whole-Body Center of Mass Movement During Standard MVJ</b>

description: This dataset presents the graphs of statistically significant correlations (p&lt;0.05) between kinematic and dynamic variables from whole-body (WB) center of mass (CoM) movement on different impulse phases of standard maximum vertical jumps (MVJ) with long countermovement (CM) at countermovement jumps (CMJ), short CM at drop jumps (DJ) from 40 cm step and squat jump (SJ) with no CM. A total of fifty-three kinematic and dynamic variables were extracted from each subject highest standard MVJ of SJ, CMJ and DJ of one hundred and ninety-eight trial tests performed by a teste group (G1) of untrained (U) sample composed by a group of six voluntary students of sports and physical education degree, ages (21.5 ± 1.4) years, (76.7 ± 9.3) kg mass and (1.79 ± 0.06) m height and a control group (G2) of sixteen trained athletes of the Portuguese male volleyball team, ages (21.4 ± 3.1) years, (85.2 ± 5.8) kg mass and (1.93 ± 0.04) m height. Each subject performed a total of 3 SJ, 3 CMJ and 3 DJ and the best of each subject SJ, CMJ and DJ was selected based on higher flight time. Selected variables were grouped on three complementary communities of (i) force-time-impulse, (ii) force-velocity-power, and (iii) force-displacement-work during WB CoM vertical displacement at different MVJ, according to their original physical quantity. Kinematic and dynamic variables were bivariate correlated at untrained and trained groups for each MVJ type, SJ, CMJ, DJ, and variable community (i, ii and iii). Statistically significant correlations were detected at 5% significance with node centrality and preferential attachment assessed through graph density. Positive statistically significant (p&lt;0.05) correlations are represented by solid lines, whereas negative statistically significant (p&lt;0.05) correlations are represented by dashed lines.
DOI: 10.22002/5v94h-88306
title: Sulfolobus solfac.P2

description: Sulfolobus solfactaricus P2 cells- active culture fixed with 0.5% glutiraldehyde.
description: <strong>Tilt Series Date:</strong> 2014-02-20</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> Sulfolobus solfataricus </p>
<strong>Strain:</strong> P2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> with Jamie Snyder from Montana</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Active culture fixed</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-02-20-18/rawdata/</p>atlas20014.mrc,  Tilt Series (Pixel Size 0.48 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-02-20-18/rawdata/atlas20014.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20014_part101_40.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-02-20-18/3dimage_39274/atlas20014_part101_40.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vr1sy-th929
title: Bsubtilis_ponA_sacculi

description: Bsubtilis_ponA_sacculi_withTA
description: <strong>Tilt Series Date:</strong> 2012-09-02</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-02-28/rawdata/</p>mj_thin_manual3.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-02-28/rawdata/mj_thin_manual3.mrc"
        > <i class="download icon"></i> Download </a></p>

        mj6_full.rec,  Reconstruction (Pixel Size 2.0 nm), 715.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-09-02-28/3dimage_57082/mj6_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16877557
title: Data Integration Files for Genetox21

description: This folder (data_integration_files) contains two subfolders which contain files from the data_integration folder of the EHSRB-BSRSE-Bioinformatics Genetox21 repository.



Subfolder 1: data_transformation_input



Raw data (e.g. from Proast) that serves as input for transformation python scripts that transform the data into a suitable format for the database



Subfolder 2: db_csvs



Extracted CSV versions of the tables from the gtx21.db database
DOI: 10.5281/zenodo.16954012
title: Data Integration Files for Genetox21

description: This folder (data_integration_files) contains two subfolders which contain files from the data_integration folder of the EHSRB-BSRSE-Bioinformatics Genetox21 repository.



Subfolder 1: data_transformation_input



Raw data (e.g. from Proast) that serves as input for transformation python scripts that transform the data into a suitable format for the database



Subfolder 2: db_csvs



Extracted CSV versions of the tables from the gtx21.db database
DOI: 10.22002/9xkg8-0qd94
title: PAO1 Wild Type

description: Pseudomonas aeruginosa PAO1 Wild Type
description: <strong>Tilt Series Date:</strong> 2014-10-14</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Streak on LB plates and incubate overnight at 37°C- Inoculate 5 mL MOPS Minimal Media Limited Nitrogen from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-14-22/rawdata/</p>PAOIWTMCTest0012_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-14-22/rawdata/PAOIWTMCTest0012_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        PAOIWTMCTest0012_mcorr_part121_1.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-14-22/3dimage_47059/PAOIWTMCTest0012_mcorr_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4hrpmk
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chlorophytum comosum",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047704-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5396c-cyd62
title: UU 2803- A413T delta P1P2

description: E.coli mutant A413T (locked in the CheA off state) with P1P2 deletions in CheA
description: <strong>Tilt Series Date:</strong> 2012-08-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo, IMOD, tomo3D</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown to log phase in TB medium, lysed with penicillin for 1 hour</p>
<strong>Sample Preparation:</strong> plunge frozen in R2/2 Quantifoil grids in liquid ethane/propane</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-30-19/rawdata/</p>2803atlas10019.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-30-19/rawdata/2803atlas10019.mrc"
        > <i class="download icon"></i> Download </a></p>

        2803atlas10019_part130_1.rec,  Reconstruction (Pixel Size 0.66 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-30-19/3dimage_20535/2803atlas10019_part130_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.rjp87k
title: Occurrence Download

description: A dataset containing 16165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Geometry POLYGON((-80.4399 43.45367,-80.37948 43.45367,-80.37948 43.4859,-80.4399 43.4859,-80.4399 43.45367))"
 ]
}

 The dataset includes 16165 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047705-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.