cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/mqd8bj
title: Illustrated catalogue of Pericopina (Lepidoptera, Erebidae, Arctiinae) in the Museum of Nature Hamburg – Zoology

description: This dataset contains the digitized treatments in Plazi based on the original journal article Moraes, Simeão de Souza, Freitas, André Victor Lucci, Silva-Brandão, Karina Lucas (2025): Illustrated catalogue of Pericopina (Lepidoptera, Erebidae, Arctiinae) in the Museum of Nature Hamburg – Zoology. Evolutionary Systematics 9 (1): 123-134, DOI: 10.3897/evolsyst.9.150930AbstractRevisionary studies and taxonomic catalogues are valuable resources for compiling biodiversity knowledge because they offer essential information for the identification and use of scientific names, enabling a biological system to be convincingly described in detail and with clear scientific nomenclature. In addition to the updated and standardized use of scientific names, data on geographic distribution, ecological relationships, host plant use, and other topics may be included in taxonomic catalogues to assist in closing knowledge gaps. Here, we offer an illustrated inventory of the pericopine tiger moths that have been deposited in the Lepidoptera collection at the Museum of Nature Hamburg - Zoology. The classification of the group has undergone significant changes in recent decades, and these updates are reflected in this catalogue. Additionally, it provides information regarding the geographical range of the moths, their associations with specific host plants, the differences between males and females in terms of physical characteristics, and their participation in mimetic rings.
DOI: 10.15468/dl.g38b8t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"NOR.11_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066950-251120083545085/datasets/export for details.
DOI: 10.15468/lvrdxm
title: Ants of the genera Myopias and Acanthoponera.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wheeler, W. M. (1923): Ants of the genera Myopias and Acanthoponera. Psyche 30: 175-192, URL: http://antbase.org/ants/publications/3374/3374.pdf
DOI: 10.15468/dl.29htuy
title: Occurrence Download

description: A dataset containing 12489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colias alfacariensis",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 12489 records from 321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066955-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/9hrsud
title: Taxonomic reassessment of chaetognaths (Chaetognatha, Sagittoidea, Aphragmophora) from Korean waters

description: This dataset contains the digitized treatments in Plazi based on the original journal article Choo, Seohwi, Jeong, Man-Ki, Soh, Ho Young (2022): Taxonomic reassessment of chaetognaths (Chaetognatha, Sagittoidea, Aphragmophora) from Korean waters. ZooKeys 1106: 165-211, DOI: http://dx.doi.org/10.3897/zookeys.1106.80184, URL: http://dx.doi.org/10.3897/zookeys.1106.80184
DOI: 10.15468/l1d7mj
title: Description of Notarius biffi n. sp. and redescription of N. insculptus (Jordan and Gilbert) (Siluriformes: Ariidae) from the eastern Pacific, with evidence of monophyly and limits of Notarius.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ricardo Betancur-R., Arturo Acero P. (2004): Description of Notarius biffi n. sp. and redescription of N. insculptus (Jordan and Gilbert) (Siluriformes: Ariidae) from the eastern Pacific, with evidence of monophyly and limits of Notarius. Zootaxa 703: 1-20, URL: http://www.zoobank.org/urn:lsid:zoobank.org:pub:867BB9D2-51FB-4CBF-AAAC-FAF2401A3362
DOI: 10.13140/rg.2.2.15338.99521
title: CRISPR-based functional genetic screening in glioblastoma.
DOI: 10.15468/duyc9a
title: Integrative taxonomy of Nearctic and Palaearctic Aleocharinae: new species, synonymies, and records (Coleoptera, Staphylinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Brunke, Adam J., Pentinsaari, Mikko, Klimaszewski, Jan (2021): Integrative taxonomy of Nearctic and Palaearctic Aleocharinae: new species, synonymies, and records (Coleoptera, Staphylinidae). ZooKeys 1041: 27-99, DOI: http://dx.doi.org/10.3897/zookeys.1041.64460, URL: http://dx.doi.org/10.3897/zookeys.1041.64460
DOI: 10.34740/kaggle/dsv/14310190
title: Reading Performance
DOI: 10.15468/48rz5g
title: Twenty-one new species of Omaliini from the Papuan Region (Coleoptera: Staphylinidae: Omaliinae), with diagnostic and faunistic notes on some species of the genus Paraphloeostiba Steel, 1960

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shavrin, Alexey V. (2024): Twenty-one new species of Omaliini from the Papuan Region (Coleoptera: Staphylinidae: Omaliinae), with diagnostic and faunistic notes on some species of the genus Paraphloeostiba Steel, 1960. Zootaxa 5424 (3): 251-307, DOI: 10.11646/zootaxa.5424.3.1, URL: http://dx.doi.org/10.11646/zootaxa.5424.3.1AbstractNew taxonomic, diagnostic and faunistic data for 26 species of Nipponophloeostiba Watanabe, 1962 (one species), Paraphloeostiba Steel, 1960 (23 species) and Xanthonomus Bernhauer, 1926 (two species) of the tribe Omaliini McLeay, 1825 of the Papuan Region (Indonesia (Western New Guinea), Papua New Guinea and Solomon Islands) are provided. Twenty-one new species are described and illustrated: Nipponophloeostiba hornabrooki sp. n., Paraphloeostiba assimile sp. n., P. attenuata sp. n., P. barclayi sp. n., P. betlephila sp. n., P. coprophila sp. n., P. latissima sp. n., P. okapensis sp. n., P. rufula sp. n., P. steeli sp. n., P. telnovi sp. n. and Xanthonomus thayerae sp. n. from Papua New Guinea, P. atramentaria sp. n., P. iriana sp. n., P. margineguttata sp. n., P. pilosa sp. n., P. riedeli sp. n., P. vitiosa sp. n., and X. guineensis sp. n. from Western New Guinea (Indonesia), and P. guadalcanalensis sp. n. and P. penelopeae sp. n. from Solomon Islands. Paraphloeostiba coriacea (Cameron, 1952) and P. rhopalocera (Cameron, 1928) are redescribed and illustrated. The male of P. papuana (Cameron, 1931) and females of P. conjuncta Shavrin, 2023 and P. coriacea are described and illustrated for the first time. Keys for Nipponophloeostiba Watanabe, 1962, Xanthonomus Bernhauer, 1926, and the Papuan species of the genus Paraphloeostiba are provided. Distributional maps of Xanthonomus and Nipponophloeostiba, and P. coriacea, P. gayndahensis (MacLeay, 1873) (for New Guinea) and P. papuana are given. Paraphloeostiba conjuncta, P. coriacea, P. gayndahensis and P. papuana are recorded from Indonesia (Western New Guinea) for the first time.
DOI: 10.21227/qv7v-2x34
title: "CSRD-O"

description: "A synthetic occlusion dataset with five camera views under occlusion"
DOI: 10.15468/xi3akd
title: Descriptions of new species of hymenopterous insects collected by Mr. A. R. Wallace at Celebes. (Part Formicidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smith, F. (1860): Descriptions of new species of hymenopterous insects collected by Mr. A. R. Wallace at Celebes. (Part Formicidae). Journal of the Proceedings of the Linnean Society of London, Zoology 5: 57-93, URL: http://128.146.250.117/pdfs/2592/2592.pdf
DOI: 10.13140/rg.2.2.22049.88166
title: Single-cell transcriptomic visualization (UMAP-style schematic) of glioblastoma cells after CRISPR Perturb-seq
DOI: 10.5281/zenodo.18066734
title: Hydrographic, particulate organic matter, and carbonate chemistry data of the northeastern Taiwan Strait

description: This upload includes the following data for the northeastern Taiwan Strait:



Hydrographic data:Table 1 for the CTD casts collected in June 2022: station, longitude, latitude, pressure, temperature, salinity, dissolved oxygen, fluorescence, and beam attenuation. The data are the same as those at https://doi.org/10.5281/zenodo.13336522.

Particulate organic matter (POM) data:Table 2 for POM: station, depth, total suspended matter (TSM), chlorophyll a (Chl), particulate organic carbon (POC), atomic C/N ratio, stable carbon isotopic composition of organic carbon (δ13COC), concentration of eight lignin monomers (Σ8), and mass ratio of vanillic acid to vanillin ((Ad/Al)V).

Carbonate chemistry data:Table 3 for carbonate chemistry data: station, depth, pH at 25 °C (pH25), and dissolved inorganic carbon (DIC).
DOI: 10.5281/zenodo.18066733
title: Hydrographic, particulate organic matter, and carbonate chemistry data of the northeastern Taiwan Strait

description: This upload includes the following data for the northeastern Taiwan Strait:



Hydrographic data:Table 1 for the CTD casts collected in June 2022: station, longitude, latitude, pressure, temperature, salinity, dissolved oxygen, fluorescence, and beam attenuation. The data are the same as those at https://doi.org/10.5281/zenodo.13336522.

Particulate organic matter (POM) data:Table 2 for POM: station, depth, total suspended matter (TSM), chlorophyll a (Chl), particulate organic carbon (POC), atomic C/N ratio, stable carbon isotopic composition of organic carbon (δ13COC), concentration of eight lignin monomers (Σ8), and mass ratio of vanillic acid to vanillin ((Ad/Al)V).

Carbonate chemistry data:Table 3 for carbonate chemistry data: station, depth, pH at 25 °C (pH25), and dissolved inorganic carbon (DIC).
DOI: 10.5281/zenodo.17938955
title: Tetramethylalloxazines as efficient singlet oxygen photosensitizers and potential redox-sensitive agents

description: Tetramethylalloxazines (TMeAll) have been found to have a high quantum yield of singlet oxygen generation when used as photosensitizers. Their electronic structure and transition energies (S0 → Si, S0 → Ti, T1 → Ti) were calculated using DFT and TD-DFT methods and compared to experimental absorption spectra. Generally, TMeAll display an energy diagram similar to other derivatives belonging to the alloxazine class of compounds, namely π,π* transitions are accompanied by closely located n,π* transitions. Photophysical data such as quantum yields of fluorescence, fluorescence lifetimes, and nonradiative rate constants were also studied in methanol (MeOH), acetonitrile (ACN), and 1,2-dichloroethane (DCE). The transient absorption spectra were also analyzed. To assess cytotoxicity of new compounds, a hemolytic assay was performed using human red blood cells (RBC) in vitro. Subsequently, fluorescence lifetime imaging experiments (FLIM) were performed on RBC under physiological and oxidative stress conditions alone or in the presence of TMeAll allowing for pinpointing changes caused by those compounds on the intracellular environment of these cells.
DOI: 10.5281/zenodo.17938954
title: Tetramethylalloxazines as efficient singlet oxygen photosensitizers and potential redox-sensitive agents

description: Tetramethylalloxazines (TMeAll) have been found to have a high quantum yield of singlet oxygen generation when used as photosensitizers. Their electronic structure and transition energies (S0 → Si, S0 → Ti, T1 → Ti) were calculated using DFT and TD-DFT methods and compared to experimental absorption spectra. Generally, TMeAll display an energy diagram similar to other derivatives belonging to the alloxazine class of compounds, namely π,π* transitions are accompanied by closely located n,π* transitions. Photophysical data such as quantum yields of fluorescence, fluorescence lifetimes, and nonradiative rate constants were also studied in methanol (MeOH), acetonitrile (ACN), and 1,2-dichloroethane (DCE). The transient absorption spectra were also analyzed. To assess cytotoxicity of new compounds, a hemolytic assay was performed using human red blood cells (RBC) in vitro. Subsequently, fluorescence lifetime imaging experiments (FLIM) were performed on RBC under physiological and oxidative stress conditions alone or in the presence of TMeAll allowing for pinpointing changes caused by those compounds on the intracellular environment of these cells.
DOI: 10.15468/edjq9s
title: Revision of Ardissoneaceae (Bacillariophyta, Mediophyceae) from Micronesian populations, with descriptions of two new genera, Ardissoneopsis and Grunowago, and new species in Ardissonea, Synedrosphenia and Climacosphenia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lobban, Christopher S., Ashworth, Matt P., Camacho, Terance, Lam, Daryl W., Theriot, Edward C. (2022): Revision of Ardissoneaceae (Bacillariophyta, Mediophyceae) from Micronesian populations, with descriptions of two new genera, Ardissoneopsis and Grunowago, and new species in Ardissonea, Synedrosphenia and Climacosphenia. PhytoKeys 208: 103-184, DOI: http://dx.doi.org/10.3897/phytokeys.208.89913, URL: http://dx.doi.org/10.3897/phytokeys.208.89913
DOI: 10.5281/zenodo.18068949
title: Ionospheric Characterization Over Iran Using Multi-Frequency IMB HF Transmitters and Global WSPRNET Reception During the 12 November 2025 Solar Storm}
DOI: 10.5281/zenodo.18068948
title: Ionospheric Characterization Over Iran Using Multi-Frequency IMB HF Transmitters and Global WSPRNET Reception During the 12 November 2025 Solar Storm}
DOI: 10.13140/rg.2.2.35471.65447
title: two-cell-type CRISPR screening platform.
DOI: 10.15468/6f6mv6
title: CLOFFBR-MA - update 1 - supplement to Checklist of the freshwater fishes of Maranhão, Brazil.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Koerber, Stefan, Guimarães, Erick Cristofore, Brito, Pâmella Silva de, Oliveira, Rafael Ferreira de, Ottoni, Felipe Polivanov (2023): CLOFFBR-MA - update 1 - supplement to Checklist of the freshwater fishes of Maranhão, Brazil. Ichthyological Contributions of PecesCriollos 84: 1-13, DOI: 10.5281/zenodo.11558473
DOI: 10.15468/t47v8r
title: Order Hyracoidea

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Wilson, Don E., Reeder, DeeAnn (2005): Order Hyracoidea. In: Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 1. Baltimore: The Johns Hopkins University Press: 87-89, ISBN: 0-8018-8221-4, DOI: 10.5281/zenodo.7316519
DOI: 10.15468/dl.pw936f
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066958-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckkbv8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"NOR.8_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066956-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.18033921
title: ErePOC raw data

description: This Zenodo deposit contains the raw and processed datasets, source code, and PyMOL session files generated in the ErePOC study. The datasets include:





Raw and processed data:





Protein-ligand pocket interaction data underlying Figures 1, 2, 5, 7, and Supplementary Figures S1–S4, S9, S12–S13, S15, and S17–S19.




Processed inputs required to reproduce t-SNE visualizations in Figure 4 and Supplementary Figures S5–S11 and S14.






Source Data Excel files:





Individual files corresponding to all quantitative figures with manageable data size (Figures 1, 2, 5, 7 and Supplementary Figures S1–S4, S9, S12–S13, S15, S17–S19).






PyMOL session files:





Structural visualization sessions for Figure 6 and Supplementary Figure S16 (.pse files).






Protein structure and reference data:





Lists of target proteins for BioLiP2, AlphaFill, and AlphaFold-predicted human proteins, as well as PDB code mappings for DEL and FDA-AD targets.




Original BioLiP2, AlphaFill, and AlphaFold-predicted protein structures are available from the respective databases:





BioLiP: https://zhanggroup.org/BioLiP/




AlphaFill: https://alphafill.eu/




AlphaFold: https://alphafold.ebi.ac.uk/download








Source code:





Full source code used in this study is available at GitHub: https://github.com/JingHuangLab/ErePOC, along with processed inputs required to reproduce all analyses.





All datasets, source code, and PyMOL session files are provided to enable reproducibility of the results presented in the ErePOC study.
DOI: 10.5281/zenodo.18033920
title: ErePOC raw data

description: This Zenodo deposit contains the raw and processed datasets, source code, and PyMOL session files generated in the ErePOC study. The datasets include:





Raw and processed data:





Protein-ligand pocket interaction data underlying Figures 1, 2, 5, 7, and Supplementary Figures S1–S4, S9, S12–S13, S15, and S17–S19.




Processed inputs required to reproduce t-SNE visualizations in Figure 4 and Supplementary Figures S5–S11 and S14.






Source Data Excel files:





Individual files corresponding to all quantitative figures with manageable data size (Figures 1, 2, 5, 7 and Supplementary Figures S1–S4, S9, S12–S13, S15, S17–S19).






PyMOL session files:





Structural visualization sessions for Figure 6 and Supplementary Figure S16 (.pse files).






Protein structure and reference data:





Lists of target proteins for BioLiP2, AlphaFill, and AlphaFold-predicted human proteins, as well as PDB code mappings for DEL and FDA-AD targets.




Original BioLiP2, AlphaFill, and AlphaFold-predicted protein structures are available from the respective databases:





BioLiP: https://zhanggroup.org/BioLiP/




AlphaFill: https://alphafill.eu/




AlphaFold: https://alphafold.ebi.ac.uk/download








Source code:





Full source code used in this study is available at GitHub: https://github.com/JingHuangLab/ErePOC, along with processed inputs required to reproduce all analyses.





All datasets, source code, and PyMOL session files are provided to enable reproducibility of the results presented in the ErePOC study.
DOI: 10.15468/fsym2y
title: Revision der europäischen Gattungen und Arten der Familie Brachychthoniidae (Acari, Oribatei) Teil 2. Mixochthonius Niedbala, 1972, Neobrachychthonius nov. gen., Synchthonius v. d. Hammen, 1952, Poecilochthonius Balogh, 1943, Brachychthonius Berlese, 1910, Brachychochthonius Jacot, 1938

description: This dataset contains the digitized treatments in Plazi based on the original journal article Moritz, M. (1976): Revision der europäischen Gattungen und Arten der Familie Brachychthoniidae (Acari, Oribatei) Teil 2. Mixochthonius Niedbala, 1972, Neobrachychthonius nov. gen., Synchthonius v. d. Hammen, 1952, Poecilochthonius Balogh, 1943, Brachychthonius Berlese, 1910, Brachychochthonius Jacot, 1938. Mitteilungen aus dem Zoologischen Museum in Berlin 52: 227-319, URL: http://unknown
DOI: 10.15468/6kqhg3
title: Order Rodentia - Family Bathyergidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Wilson, Don E., Reeder, DeeAnn (2005): Order Rodentia - Family Bathyergidae. In: Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2. Baltimore: The Johns Hopkins University Press: 1538-1542, ISBN: 0-8018-8221-4, DOI: 10.5281/zenodo.7316535
DOI: 10.15468/dl.uu4zkg
title: Occurrence Download

description: A dataset containing 20864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gonepteryx cleopatra",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 20864 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066959-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hr5jao
title: New records of ants (Hymenoptera: Formicidae) from Iran.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Paknia, O., Radchenko, A., Pfeiffer, M. (2010): New records of ants (Hymenoptera: Formicidae) from Iran. Asian Myrmecology 3: 29-38, URL: http://antbase.org/ants/publications/23045/23045.pdfABSTRACT. The ant species list of Iran is far from complete. So far, only 110 species belonging to 26 genera have been recorded from Iran. For this study, we collected the majority of ant material in two periods of field work in spring and summer of 2007 and 2008. In total, we checked more than 35,000 specimens, and recorded 32 species and six genera new to Iran: Dolichoderus, Myrmecina, Proformica, Pyramica, Stenamma and Strongylognathus. Our new records from the Central Persian desert basins indicate that the ant fauna of this region probably has more species in common with that of the Central Asian deserts than with the hot subtropical deserts of the Middle East and Arabian Peninsula.
DOI: 10.15468/mj8rjb
title: Cheirogaleidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Russell A. Mittermeier, Anthony B. Rylands, Don E. Wilson (2013): Cheirogaleidae. In: Handbook of the Mammals of the World – Volume 3 Primates. Barcelona: Lynx Edicions: 28-65, ISBN: 978-84-96553-89-7, DOI: 10.5281/zenodo.6639118
DOI: 10.15468/vpj35k
title: A revision of Gomphostemma (Lamiaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bongcheewin, Bhanubong, Ingrouille, Martin J., Paton, Alan J. (2022): A revision of Gomphostemma (Lamiaceae). Kew Bulletin 77 (1): 27-92, DOI: 10.1007/s12225-021-09991-y, URL: http://dx.doi.org/10.1007/s12225-021-09991-y