cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4894888
title: Impacts of gut microbial depletion on tadpole thermal physiology

description: The goal of our study was to determine if depletion of gut microbiome diversity would alter host thermal tolerance in a vertebrate ectotherm. We raised laboratory-reared tadpoles of the green frog in two microbial colonization treatments: colonized and depleted. Colonized tadpoles were raised in natural pond water to provide a rich source of microbiota for colonization of the gut, and depleted tadpoles were raised in autoclaved pond water to reduce this source of microbiota. We then performed a suite of experiments to test for differences in thermal physiology between groups. In our first experiment we tested tadpole acute thermal tolerance (critical thermal minimum and maximum). We verified our results in a second set of tadpoles and then tested tadpole survival under heat stress and thermal sensitivity of locomotion performance. Lastly, we tested for differences in physiological traits at lower levels of biological organization to identify putative mechanisms behind our results including mitochondrial enzyme activities, phospholipid membrane composition, and whole-organism metabolic rate.
DOI: 10.25345/c5g242
title: MassIVE MSV000087572 - DOM Interlab-LCMS 2021 - lab20
title: Interlab study of marine dissolved organic matter and algal extracts 2021. lab 20
DOI: 10.25345/c5b83h
title: MassIVE MSV000087573 - Characterization of calpain and caspase-6 generated glial fibrillary acidic protein breakdown products following traumatic brain injury and astroglial cell injury
title: Glial fibrillary acidic protein (GFAP) is the major intermediate filament III protein of astroglia cells and is upregulated in astrogliosis following traumatic brain injury (TBI). Here we reported that GFAP is truncated at both the C- and N-terminals by cytosolic protease calpain to GFAP breakdown products (GBDP) of 46-40 kDa then 38 kDa following pro-necrotic (A23187) and pro-apoptotic (staurosporine) challenges to primary cultured astroglia or neuron-glia mixed cells. In addition, with another pro-apoptotic challenge (EDTA) where caspases are activated but not calpain, GFAP was fragmented internally, generating C-terminal GBDP of 20 kDa. Following controlled cortical impact in mice, GBDP of 46-40K and 38K were formed at day 3 to 28 post-injury. Purified GFAP protein treated with calpain-1 and -2 revealed that they produce (i) major N-terminal cleavage site between A-56 and A-75, and (ii) major C-terminal cleavage sites between T-383 and Q-388, producing a limit fragment of 38K and concurrently releasing several small GFAP peptides. Caspase-6 treated GFAP was cleaved at D-78, R-79, D-266 and A-267, where GFAP was relatively resistant to caspase-3. We also derived a GBDP-38K N-terminal specific antibody which only labels injured astroglia cell body in both cultured astroglia and in mouse cortex and hippocampus after TBI. Lastly as clinical translation, we observed that CSF samples collected from severe human TBI have elevated levels of calpain-generated GBDP-38K. Thus by examining the various forms of GFAP breakdown products as biomarkers, one can gain mechanistic insights of tracking astroglia injury under conditions where calpain and/or caspase-6 are activated.
DOI: 10.5281/zenodo.4899994
title: FastQC reports for real-time basecalled datasets (run C)

description: FastQC reports for datasets generated with the real-time sequencing protocol on the Illumina MiSeq. All data was generated for the third test (run C), with full read lengths of 2x301bp.
DOI: 10.5281/zenodo.4899993
title: FastQC reports for real-time basecalled datasets (run C)

description: FastQC reports for datasets generated with the real-time sequencing protocol on the Illumina MiSeq. All data was generated for the third test (run C), with full read lengths of 2x301bp.
DOI: 10.17632/d5fmj34b3h.1
title: LINF_130014500

description: katanin-like | serine peptidase, Clan SJ, family S16 Leishmania infantum
DOI: 10.17632/vhkhcs4vnt.1
title: Cu-Al_alloys_LAMMPS

description: Contains the LAMMPS scripts to perform tensile deformation and the results of the same, calculate SFE at 0 K and perform thermodynamic integration at temperature T.
DOI: 10.17632/k9r2d9z999.1
title: Reddit r/AskScience Flair Dataset

description: Reddit is a social news, content rating and discussion website. It's one of the most popular sites on the internet. Reddit has 52 million daily active users and approximately 430 million users who use it once a month. Reddit has different subreddits and here We'll use the r/AskScience Subreddit. The dataset is extracted from the subreddit /r/AskScience from Reddit. The data collected between 01-01-2016 and 31-05-2021. It contains 519054 Datapoints and 26 Columns. The database contains a number of information about the questions asked on the subreddit, the description of the submission, the flair of the question, NSFW or SFW status, year of the submission and more. The data is extracted using python and Pushshift's API. A little bit of cleaning is done using NumPy and pandas as well. (see the descriptions of individual columns below). The dataset contains the following columns and description: author - Redditor Name author_fullname - Redditor Full name contest_mode - Contest mode [implement obscured scores and randomized sorting]. created_utc - Time the submission was created, represented in Unix Time. domain - Domain of submission. edited - If the post is edited or not. full_link - Link of the post on the subreddit. gilded - If the submission is gilded i.e. if someone awarded the submission Reddit gold. id - ID of the submission. is_self - Whether or not the submission is a self post (text-only). link_flair_css_class - CSS Class used to identify the flair. link_flair_text - Flair on the post or The link flair’s text content. locked - Whether or not the submission has been locked. num_comments - The number of comments on the submission. over_18 - Whether or not the submission has been marked as NSFW. permalink - A permalink for the submission. retrieved_on - time ingested. score - The number of upvotes for the submission. description - Description of the Submission. spoiler - Whether or not the submission has been marked as a spoiler. stickied - Whether or not the submission is stickied. thumbnail - Thumbnail of Submission. question - Question Asked in the Submission. url - The URL the submission links to, or the permalink if a self post. year - Year of the Submission. banned - Banned by the moderator or not. This dataset can be used for Flair Prediction, NSFW Classification and different Text Mining/NLP tasks. Exploratory Data Analysis can also be done to get the insights and see the trend and pattern over the years.
DOI: 10.17632/bj2gyvkgvx.2
title: Dataset of manually annotated social media comments in Albanian Language for Sentiment Analysis

description: The dataset comprises comments collected from the official Facebook page of the National Institute of Public Health of Kosovo (NIPHK) for a period of 6 months, from March 12 till August 31, 2020. On March 12, the first case of COVID-19 was confirmed in Kosovo. Comments were retrieved using a tool called Comment Exporter. These comments were in Albanian language and reflect the opinions of Kosovo citizens expressed on Facebook about the Covid-19 pandemics. This dataset contains a total of 10,132 comments along with 12 attributes.
DOI: 10.17632/rghgjjfvj4.1
title: #KnockOutHPV

description: Investigator-created likert-type survey
DOI: 10.17632/gjjf84vtr7.1
title: Bulk Glass Reinforced Composite Columns Physical Testing Results, Analysis, and Discussion Data

description: Raw data for Bulk Glass Reinforced Composite Columns Physical Testing Results, Analysis, and Discussion research paper. These are composite columns constructed of polyurethane resin (which naturally bonds to glass, eliminating the need for sizing agents) and bulk glass. The available data is raw data of the load - deflection curves for the sample glass reinforced composite columns. Testing was exclusively compressive as this is the intended design use of these columns. Additionally, finite element models are provided, which were utilized to determine the stresses within the columns at the point of delamination and failure. The finite element models are presented such that the bonding condition can be modified to determine the failure buckling strength condition of both bonded and unbonded columns.
DOI: 10.17632/5cd55myxgy.1
title: Nomogram analysis for the development of an algorithm for reflectance confocal microscopy features for early melanoma diagnosis in extrafacial flat pigmented melanocytic lesions

description: A retrospective evaluation of RCM images of melanocytic extrafacial flat pigmented lesions with reticular and/or homogeneous dermoscopic pattern.
DOI: 10.17632/xjhtcxw8sz.1
title: Scoping Review of theories for learning analytics

description: List of filtered papers titles, year, type, and year
DOI: 10.17632/wcx86snyxv.1
title: PH_COVID-19 KAP SUC Employees

description: Survey data of COVID-19-related knowledge, attitude, and practices among the employees (faculty and administrative) in a Philippine state university during the 1st enhanced community quarantine (ECQ) period.
DOI: 10.17632/k3srd25knd.4
title: Messier 82

description: This dataset is a preliminary version of Messier 82 processed on JS9-4L image processor.
DOI: 10.17632/rh3hrp4pnj.1
title: Music and Animal Basic Emotions

description: The dataset includes sound files for music and animal basic emotions
DOI: 10.17632/hwfxt88y9g.1
title: Bringing own shopping bags in Vietnam

description: The dataset has collected the opinions of 536 Vietnamese consumers about bringing own shopping bags instead of using plastic bags.
DOI: 10.17632/9k5763jp8j.1
title: Raw interior temperature time series

description: Temporal Raw sensor data series of the interior temperature in a home environment. The sensor was placed near a window and shows daily shift depending on whether the sun was hitting the sensor not. The temperature data is in °C. The data was taken using the internal temperature sensor from a MPU6050, with a sampling period of 10 s. The data collection was started on 04/03/2021 @ 18:08, until 09/03/2021 @ 18:10. The total data series contains 43233 individual data points.
DOI: 10.5281/zenodo.4900009
title: Metadata Prediction project analysis/nmf_terms/{models,results}

description: Results associated with the Metadata Prediction project. See metadata-prediction for more information.<br>
DOI: 10.5281/zenodo.4900008
title: Metadata Prediction project analysis/nmf_terms/{models,results}

description: Results associated with the Metadata Prediction project. See metadata-prediction for more information.<br>
DOI: 10.48320/92146337-4c95-4036-9014-a8f8b33ba0dc
title: Monitoring of Labour Protests in Russia
DOI: 10.35110/0e3e3a68-871c-4359-9c56-716d4071e992
title: Knowledge-driven classification of Sentinel 2 time series over Mato Grosso for year 2017

description: Knowledge-driven classification of Sentinel 2 time series over Mato Grosso for year 2017
DOI: 10.6084/m9.figshare.14731938.v1
title: Supplementary material to "Gendered perspectives on occupational prevention interventions and policies: A scoping review of the literature"

description: Supplementary material<br>
DOI: 10.3886/e130341
title: Data and Code for: Intergenerational Economic Mobility and the Racial Wealth Gap

description: A growing body of research documents the importance of wealth and the racial wealth gap in perpetuating inequality across generations. We add to this literature by examining the impact of wealth on child income. Our two stage least squares regressions reveal that grandparental and parental wealth have an important effect on the younger generation’s stock (first stage results), which in turn affects the younger generation’s household income (second stage results). We further explore the relationship between income and wealth by decomposing the child’s income by race. We find that the intergroup disparity in income is mainly attributable to differences in family background. These findings indicate that wealth is an important source of income inequality.<br>
DOI: 10.5281/zenodo.4899944
title: Drosophila embryo

description: The dataset contains frontal slices of light-sheet microscopy images of Drosophila embryos. For further details of the imaging procedure refer to the paper in references. Structure: <strong>train</strong> (307 files): graph_data - HDF files with graphs node features; pix_data - HDF files with raw images, superpixels, and edge maps; <strong>val </strong>(10 files): graph_data - HDF files with graphs node features; pix_data - HDF files with raw images, superpixels, edge maps and ground truth. Each image file contains: <strong>node_labeling: </strong>superpixel map (sp); <strong>ps_edge: </strong>edge map obtained from the PlantSeg network; <strong>raw</strong><strong>:</strong> raw image (single channel); <strong>sp_edge</strong><strong>:</strong> edge map obtained from the superpixel map; <strong>gt</strong><strong>: </strong>ground-truth labels (provided only for validation). Each graph file consists of: <strong>offsets: </strong>set of offsets used for affinity maps; <strong>affinities: </strong>affinity map (for each offset); <strong>edges:</strong> all neighboring edges, (sp<sub>i</sub>, sp<sub>j</sub>); <strong>edge_feat: </strong>computed features for each edge; <strong>gt_edge_weights</strong><strong>: </strong>the same partitioning as <strong>edges</strong> but with labels (label each edge pertains to), only for validation set.
description: {"references": ["Sourabh Bhide, Ralf Mikut, Maria Leptin, Johannes Stegmaier. Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological Samples"]}
DOI: 10.5281/zenodo.4899943
title: Drosophila embryo

description: The dataset contains frontal slices of light-sheet microscopy images of Drosophila embryos. For further details of the imaging procedure refer to the paper in references. Structure: <strong>train</strong> (307 files): graph_data - HDF files with graphs node features; pix_data - HDF files with raw images, superpixels, and edge maps; <strong>val </strong>(10 files): graph_data - HDF files with graphs node features; pix_data - HDF files with raw images, superpixels, edge maps and ground truth. Each image file contains: <strong>node_labeling: </strong>superpixel map (sp); <strong>ps_edge: </strong>edge map obtained from the PlantSeg network; <strong>raw</strong><strong>:</strong> raw image (single channel); <strong>sp_edge</strong><strong>:</strong> edge map obtained from the superpixel map; <strong>gt</strong><strong>: </strong>ground-truth labels (provided only for validation). Each graph file consists of: <strong>offsets: </strong>set of offsets used for affinity maps; <strong>affinities: </strong>affinity map (for each offset); <strong>edges:</strong> all neighboring edges, (sp<sub>i</sub>, sp<sub>j</sub>); <strong>edge_feat: </strong>computed features for each edge; <strong>gt_edge_weights</strong><strong>: </strong>the same partitioning as <strong>edges</strong> but with labels (label each edge pertains to), only for validation set.
description: {"references": ["Sourabh Bhide, Ralf Mikut, Maria Leptin, Johannes Stegmaier. Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological Samples"]}
DOI: 10.3886/e141122v3
title: REPLICATION DATA FOR [The impact of increasing community-based state mental health agency expenditures on violent crime ]

description: Using state mental health agency data, US Census data, FBI Uniform Crime Reporting Data, and other public databases, we constructed a panel of the 50 US states over nine years. We used the resultant Stata .dta file in order to apply an instrumental variables empirical model with state- and time-specific fixed effects to adjust for policy endogeneity, omitted variable bias, and time trends.
description: States in the United States. Smallest Geographic Unit: US states
description: Crime rates created by dividing by population and multiplying by 100,000.
DOI: 10.5281/zenodo.4899990
title: Relative advantages and compatibility of a biometric patient identification tool in Zambia: a qualitative analysis, Extended Data

description: <strong>FGDInterviewGuide</strong> This document outlines the interview guide used to facilitate focus group discussions amongst mothers in both rural and urban settings in Zambia in February 2020. Questions asked regard demographics, experience with biometrics, experiences with existing Under-Five Card system, and impressions/experiences related to the novel biometric tool. <strong>IntroLetterAndConsentForm</strong> Included in this document are the introduction letter respondents received inviting them to participating in the study. Additionally, the document includes the consent form participants signed demonstrating their consent to be interviewed and acknowledgment of the consent conversation conducted orally. Both demonstrate that participation was voluntary and non-coerced. <strong>KII(Clinician:Nurse)Interview Guide </strong> This document outlines the interview guide used to facilitate interviews with key informants including clinicians and nurses in both urban and rural settings of Zambia in February 2020. Questions asked regard experience with biometrics, experiences with existing Under-Five Card system, and impressions/experiences related to the novel biometric tool. <strong>KII(DHO,IO)Interview Guide </strong> This document outlines the interview guide used to facilitate interviews with key informants including the district health officer and the information officer of Kalomo, Zambia in February 2020. Questions asked regard experience with biometrics, impressions of the existing Under-Five Card system, and impressions/applications of the novel biometric tool. <strong>StudyTimeline </strong> This table shows the timeline of the project, broken down by months and weeks. Phases included ethical approval, participant recruitment, interviews, transcription/translation, and data analysis. The study spanned December 2019 to July 2020. <strong>Supplemental Data Collection Information</strong> This table includes information regarding the interviewers: occupation, gender, experience, and relation to the participants. Other information includes participant refusal/drop out, location and duration of the interviews, recordings, field notes, and transcript follow up.
DOI: 10.5281/zenodo.4899989
title: Relative advantages and compatibility of a biometric patient identification tool in Zambia: a qualitative analysis, Extended Data

description: <strong>FGDInterviewGuide</strong> This document outlines the interview guide used to facilitate focus group discussions amongst mothers in both rural and urban settings in Zambia in February 2020. Questions asked regard demographics, experience with biometrics, experiences with existing Under-Five Card system, and impressions/experiences related to the novel biometric tool. <strong>IntroLetterAndConsentForm</strong> Included in this document are the introduction letter respondents received inviting them to participating in the study. Additionally, the document includes the consent form participants signed demonstrating their consent to be interviewed and acknowledgment of the consent conversation conducted orally. Both demonstrate that participation was voluntary and non-coerced. <strong>KII(Clinician:Nurse)Interview Guide </strong> This document outlines the interview guide used to facilitate interviews with key informants including clinicians and nurses in both urban and rural settings of Zambia in February 2020. Questions asked regard experience with biometrics, experiences with existing Under-Five Card system, and impressions/experiences related to the novel biometric tool. <strong>KII(DHO,IO)Interview Guide </strong> This document outlines the interview guide used to facilitate interviews with key informants including the district health officer and the information officer of Kalomo, Zambia in February 2020. Questions asked regard experience with biometrics, impressions of the existing Under-Five Card system, and impressions/applications of the novel biometric tool. <strong>StudyTimeline </strong> This table shows the timeline of the project, broken down by months and weeks. Phases included ethical approval, participant recruitment, interviews, transcription/translation, and data analysis. The study spanned December 2019 to July 2020. <strong>Supplemental Data Collection Information</strong> This table includes information regarding the interviewers: occupation, gender, experience, and relation to the participants. Other information includes participant refusal/drop out, location and duration of the interviews, recordings, field notes, and transcript follow up.
DOI: 10.5066/p989gu63
title: Serum osmolality, cortisol, and protein in laboratory common carp (Cyprinus carpio)

description: Common carp were placed into three treatment groups based on levels of induced stress in the laboratory setting. Measurements of common carp blood serum cortisol and serum protein were collected by spectrophotometry. Additionally, serum osmolality measurements were obtained by vapor pressure osmometry. Fish weights were taken at the time of blood collection.
DOI: 10.6084/m9.figshare.14731974.v1
title: Source data for "High thermoelectric figure of merit of porous Si nanowires from 300 to 700 K"

description: Data for Fig.2 and Fig.3 of the paper "High thermoelectric figure of merit of porous Si nanowires from 300 to 700 K".<br>Fig 2. Measured (a) effective thermal conductivity, κ<sub>eff</sub>, (b) effective electrical conductivity, σ<sub>eff</sub>, and (c) Seebeck coefficient, S, of various porous SiNWs as a function of temperature. For the legend, the first number represents SiNW porosity, the middle one is boron doping concentration (p) measured using secondary ion mass spectrometry (SIMS, see Methods), and the last number is SiNW diameter. Note κ<sub>eff</sub> and σ<sub>eff</sub> are extracted based on nanowire diameter without normalizing with porosity. (d) Calculated thermoelectric figure of merit ZT for the three samples with porosity = 46% and p = 2.2×10<sup>20</sup> cm<sup>-3</sup> (152 nm, 171 nm, 184 nm) with the highest ZT in this work, where the previously measured ZT results of single rough SiNW, thin SiNW array, polycrystalline Si nanotube mesh, holey Si, nanobulk Si and bulk Si (8.1×10<sup>19</sup> cm<sup>-3</sup> boron-doped) are plotted for comparison.<br>Fig 3. (a) Black square represents the ratio of porous SiNW κ (porosity = 46% and p = 2.2×10<sup>20</sup> cm<sup>-3</sup>, 171 nm) to that of optimally doped bulk Si (8.1×10<sup>19</sup> cm<sup>-3</sup> boron-doped) as a function of temperature. Green squares show the ratio of power factor of porous SiNW (porosity = 46% and p = 2.2×10<sup>20</sup> cm<sup>-3</sup>, 171 nm) to that of the optimally doped bulk Si (8.1×10<sup>19</sup> cm<sup>-3</sup> boron-doped). (b-d) Comparison between the measured temperature-dependent (b) κ, (c) σ, and (d) S with modeled results considering the effects of pore boundary scattering. Note that in panel (b) for the porosity = 46% and p = 2.2×10<sup>20</sup> cm<sup>-3</sup> sample, charge carriers make a non-negligible contribution to thermal transport, and the modeled κ is the sum of the calculated lattice thermal conductivity and electronic thermal conductivity, κ<sub>e</sub>, estimated using the Wiedemann–Franz law.
DOI: 10.6084/m9.figshare.14079866.v1
title: Supplementary file 1

description: Methodology description
DOI: 10.5287/bodleian:r17kvjb7d
title: The Mineral Susceptibility Database