cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14743197
title: Supplementary Material for: COVID-19 in CKD Patients: Lessons from 553 CKD Patients with Biopsy-Proven Kidney Disease

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) patients infected with COVID-19 are at risk of serious complications such as hospitalization and death. The prognosis and lethality of COVID-19 infection in patients with established kidney disease has not been widely studied. <b><i>Methods:</i></b> Data included patients who underwent kidney biopsy at the Vall d’Hebron Hospital between January 2013 and February 2020 with COVID-19 diagnosis during the period from March 1 to May 15, 2020. <b><i>Results:</i></b> Thirty-nine (7%) patients were diagnosed with COVID-19 infection. Mean age was 63 ± 15 years and 48.7% were male. Hypertension was present in 79.5%, CKD without renal replacement therapy in 76.9%, and cardiovascular disease in 64.1%. Nasopharyngeal swab was performed in 26 patients; older (<i>p</i> = 0.01), hypertensive (<i>p</i> = 0.005), and immunosuppressed (<i>p</i> = 0.01) patients, those using RAS-blocking drugs (<i>p</i> = 0.04), and those with gastrointestinal symptoms (<i>p</i> = 0.02) were more likely to be tested for CO­VID-19. Twenty-two patients required hospitalization and 15.4% died. In bivariate analysis, mortality was associated with older age (<i>p</i> = 0.03), cardiovascular disease (<i>p</i> = 0.05), chronic obstructive pulmonary disease (<i>p</i> = 0.05), and low hemoglobin levels (<i>p</i> = 0.006). Adjusted Cox regression showed that low hemoglobin levels at admission had 1.81 greater risk of mortality. <b><i>Conclusions:</i></b> Patients with CO­VID-19 infection and kidney disease confirmed by kidney biopsy presented a mortality of 15.4%. Swab test for COVID-19 was more likely to be performed in older, hypertensive, and immunosuppressed patients, those using RAS-blocking drugs, and those with gastrointestinal symptoms. Low hemoglobin is a risk factor for mortality.
DOI: 10.6084/m9.figshare.14743197.v1
title: Supplementary Material for: COVID-19 in CKD Patients: Lessons from 553 CKD Patients with Biopsy-Proven Kidney Disease

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) patients infected with COVID-19 are at risk of serious complications such as hospitalization and death. The prognosis and lethality of COVID-19 infection in patients with established kidney disease has not been widely studied. <b><i>Methods:</i></b> Data included patients who underwent kidney biopsy at the Vall d’Hebron Hospital between January 2013 and February 2020 with COVID-19 diagnosis during the period from March 1 to May 15, 2020. <b><i>Results:</i></b> Thirty-nine (7%) patients were diagnosed with COVID-19 infection. Mean age was 63 ± 15 years and 48.7% were male. Hypertension was present in 79.5%, CKD without renal replacement therapy in 76.9%, and cardiovascular disease in 64.1%. Nasopharyngeal swab was performed in 26 patients; older (<i>p</i> = 0.01), hypertensive (<i>p</i> = 0.005), and immunosuppressed (<i>p</i> = 0.01) patients, those using RAS-blocking drugs (<i>p</i> = 0.04), and those with gastrointestinal symptoms (<i>p</i> = 0.02) were more likely to be tested for CO­VID-19. Twenty-two patients required hospitalization and 15.4% died. In bivariate analysis, mortality was associated with older age (<i>p</i> = 0.03), cardiovascular disease (<i>p</i> = 0.05), chronic obstructive pulmonary disease (<i>p</i> = 0.05), and low hemoglobin levels (<i>p</i> = 0.006). Adjusted Cox regression showed that low hemoglobin levels at admission had 1.81 greater risk of mortality. <b><i>Conclusions:</i></b> Patients with CO­VID-19 infection and kidney disease confirmed by kidney biopsy presented a mortality of 15.4%. Swab test for COVID-19 was more likely to be performed in older, hypertensive, and immunosuppressed patients, those using RAS-blocking drugs, and those with gastrointestinal symptoms. Low hemoglobin is a risk factor for mortality.
DOI: 10.5281/zenodo.4905710
title: Urbanization effect on the ant diversity and composition in an Arid City

description: the table includes the list of plants recorded at the studied sites in Wadi Hanifa, Riyadh, Saudi Arabia.
DOI: 10.5281/zenodo.4905709
title: Urbanization effect on the ant diversity and composition in an Arid City

description: the table includes the list of plants recorded at the studied sites in Wadi Hanifa, Riyadh, Saudi Arabia.
DOI: 10.6084/m9.figshare.14743233
title: 10x Cell Ranger output, 8 samples

description: 10x Cell Ranger output from 8 patients with mantle cell lymphoma.<br>
DOI: 10.6084/m9.figshare.14743233.v1
title: 10x Cell Ranger output, 8 samples

description: 10x Cell Ranger output from 8 patients with mantle cell lymphoma.<br>
DOI: 10.6084/m9.figshare.14743152
title: Foodborne disease outbreak

description: This excel chart gives the raw data associated with a brief epidemiological study done to investigate a foodborne disease outbreak caused by <i>Salmonella</i> enteritidis due to consumption of chicken shawarma.
DOI: 10.6084/m9.figshare.14743152.v1
title: Foodborne disease outbreak

description: This excel chart gives the raw data associated with a brief epidemiological study done to investigate a foodborne disease outbreak caused by <i>Salmonella</i> enteritidis due to consumption of chicken shawarma.
DOI: 10.5281/zenodo.4868981
title: High-throughput characterization of photocrosslinker-bearing ion channel variants to map residues critical for function and pharmacology

description: Contains a read_me file and data related to the publication: High-throughput characterization of photocrosslinker-bearing ion channel variants to map residues critical for function and pharmacology
description: Søren Friis is a full-time employee of Nanion Technologies. The other authors declare no competing interests. We acknowledge the Lundbeck Foundation (R139-2012-12390 to SAP and R218-2016-1490 to NB), the Boehringer Ingelheim Fond (to NB) and the University of Copenhagen for financial support.
DOI: 10.6084/m9.figshare.14743272
title: Transcurrent Regimes During Rotational Rifting: New Insights from Magnetic Anomalies in the Red Sea

description: magnetic grids and cross sections.
DOI: 10.18728/igb-fred-573.2
title: Müggelsee nutrients

description: 1979 - 2016 Müggelsee Chemistry and nutrients weekly sampling on mondays.
DOI: 10.5517/ccdc.csd.cc1ksx2b
title: CCDC 1453902: Experimental Crystal Structure Determination

description: Related Article: Liang Xue, Bo Cao, Hai-Bin Hou, Jiang-Wei Yang, Jian-Lin Zhang, Yu-Tao Chen|2016|Latin American J.Pharm.|35|1890|
DOI: 10.5517/ccdc.csd.cc1lfyvt
title: CCDC 1473177: Experimental Crystal Structure Determination

description: Related Article: Mingxing Zheng, Zhibing Zhu|2016|Latin American J.Pharm.|35|2084|
DOI: 10.5517/ccdc.csd.cc1lvlst
title: CCDC 1485327: Experimental Crystal Structure Determination

description: Related Article: Xiao-Mian Lv, Ling-Mei Jia, Ya-Li Chen|2016|Latin American J.Pharm.|35|2080|
DOI: 10.25646/8597
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4905862
title: Whole-brain visually evoked activity maps in head-fixed awake mice

description: Example datasets of whole-brain visually evoked activity maps in head-fixed awake mice obtained with functional ultrasound imaging Detailed description: see file_description.txt Update June 2021: the metadata was modified to be compatible with an updated version of the registration code https://github.com/nerf-common/whole-brain-fUS
DOI: 10.5281/zenodo.4040957
title: Whole-brain visually evoked activity maps in head-fixed awake mice

description: Example datasets of whole-brain visually evoked activity maps in head-fixed awake mice obtained with functional ultrasound imaging Detailed description: see file_description.txt Update June 2021: the metadata was modified to be compatible with an updated version of the registration code https://github.com/nerf-common/whole-brain-fUS
DOI: 10.15468/ahvmcd
title: ITS samples from the air and snow of Livingston Island

description: Snow (n=2) and air (n=1) samples from Livingston Island (Antarctica) were analyzed for the presence of Fungi using amplicon sequencing techniques (Illumina MiSeq, ITS2 marker gene).
DOI: 10.17197/u20003
title: U20003 Intergenerational effects of smallpox vaccination over two centuries

description: Datauttaget utgör en grund för en studie som undersöker om utbyggnaden av smittkoppsvaccination 1801–1850 i Sverige gav bestående hälsoeffekter, som gjorde det möjligt för individer att överleva utbrott av smittkoppor och andra infektionssjukdomar samt om deras efterföljande generationer hade det bättre. Studien undersöker både kort- och långsiktiga hälso- och socioekonomiska konsekvenser av smittkoppsvaccinering. Data hämtas från databaserna POPUM och POPLINK, som är två historiska befolkningsdatabaser med individdata registrerat från den svenska folk- och kyrkobokföringen. Databaserna innehåller data från kyrkoregister som husförhörslängder, flyttningslängder, födelse- och dopböcker, lysnings- och vigselböcker, död- och begravningsböcker. Individdata från dessa olika källor har länkats samman för respektive individ. Dessutom har även länkning skett mellan relaterade individer (relationslänkning) liksom mellan församlingar (regionslänkning).
DOI: 10.34740/kaggle/dsv/2310946
title: Dutch News Articles
DOI: 10.6084/m9.figshare.14743374.v1
title: Investigating cognitive workload in concurrent speech-based information communication

description: Users are capable of noticing, listening, and comprehending concurrent information simultaneously, but in conventional speech-based interaction methods, systems communicate information sequentially to the users. This mismatch implies that the sequential approach may be under-utilising human perception capabilities and restricting users to seek information to sub-optimal levels. This paper reports on an experiment that investigates the cognitive workload experienced by the users when listening to a variety of combinations of information types in concurrent formats. Fifteen different combinations of concurrent information streams were investigated, and the subjective listening workload for each of the combination was measured using NASA-TLX.
DOI: 10.6084/m9.figshare.14743374
title: Investigating cognitive workload in concurrent speech-based information communication

description: Users are capable of noticing, listening, and comprehending concurrent information simultaneously, but in conventional speech-based interaction methods, systems communicate information sequentially to the users. This mismatch implies that the sequential approach may be under-utilising human perception capabilities and restricting users to seek information to sub-optimal levels. This paper reports on an experiment that investigates the cognitive workload experienced by the users when listening to a variety of combinations of information types in concurrent formats. Fifteen different combinations of concurrent information streams were investigated, and the subjective listening workload for each of the combination was measured using NASA-TLX.
DOI: 10.17197/u16010
title: U16010 Cultural determinants of city growth: Evidence from Sweden

description: Syftet med detta uttag är att studera kulturella normer, samt migration, kopplat till namngivning av barn. Databasen POPUM är en historisk databas som innehåller individdata registrerat från den svenska folk- och kyrkobokföringen. Databasen innehåller data från kyrkoregister som husförhörslängder, flyttningslängder, födelse- och dopböcker, lysnings- och vigselböcker, död- och begravningsböcker. Individdata från dessa olika källor har länkats samman för respektive individ. Dessutom har även länkning skett mellan relaterade individer (relationslänkning) samt mellan församlingar (regionslänkning).
DOI: 10.6084/m9.figshare.14743428
title: Supplementary Material for: Contribution of Growth Arrest-Specific 5/miR-674 to the Hypothalamus Pituitary Adrenal Axis Regulation Effect by Electroacupuncture following Trauma

description: <b><i>Background:</i></b> Electroacupuncture (EA) can improve trauma-induced hypothalamus pituitary adrenal axis (HPA) hyperactivity. However, the mechanism underlying the EA effect has not been fully understood. <b><i>Methods and Study Design:</i></b> This study was undertaken to explore the role of hypothalamic growth arrest-specific 5 (Gas5) in the regulation of EA on HPA axis function post-surgery. Paraventricular nuclear Gas5 levels were upregulated in rats using an intracerebroventricular injection of pAAV-Gas5. Primary hypothalamic neurons and 293T cells were cultured for miRNA and siRNAs detection. Radioimmunoassay, PCR, Western blot, and immunohistochemistry were used for HPA axis function evaluation. <b><i>Results:</i></b> The overexpression of Gas5 abolished the effect of EA on the regulation of trauma-induced HPA axis hyperactivity. Using a bioinformatics analysis and dual luciferase assay, we determined that miRNA-674 was a target of Gas5. Additionally, miRNA-674 levels were found to have decreased in trauma rats, and this effect was reversed after EA intervention. TargetScan analysis showed that serum and glucocorticoid inducible kinase 1 (SGK1) were targets of miR-674. Moreover, we found that SGK1 protein levels increased in trauma rats and SGK1 expression inhibition alleviated HPA axis abnormality post-surgery. EA could improve the number of hypothalamus iba-1 positive cells and hypothalamic interleukin 1 beta protein expression. <b><i>Conclusions:</i></b> Our study demonstrated the involvement of the hypothalamic Gas5/miRNA-674/SGK1 signaling pathway in EA regulation of HPA axis function after trauma.
DOI: 10.6084/m9.figshare.14743422
title: Investigating cognitive workload in concurrent speech-based information communication - CSV

description: Users are capable of noticing, listening, and comprehending concurrent information simultaneously, but in conventional speech-based interaction methods, systems communicate information sequentially to the users. This mismatch implies that the sequential approach may be under-utilising human perception capabilities and restricting users to seek information to sub-optimal levels. This paper reports on an experiment that investigates the cognitive workload experienced by the users when listening to a variety of combinations of information types in concurrent formats. Fifteen different combinations of concurrent information streams were investigated, and the subjective listening workload for each of the combination was measured using NASA-TLX.
DOI: 10.6084/m9.figshare.14743422.v1
title: Investigating cognitive workload in concurrent speech-based information communication - CSV

description: Users are capable of noticing, listening, and comprehending concurrent information simultaneously, but in conventional speech-based interaction methods, systems communicate information sequentially to the users. This mismatch implies that the sequential approach may be under-utilising human perception capabilities and restricting users to seek information to sub-optimal levels. This paper reports on an experiment that investigates the cognitive workload experienced by the users when listening to a variety of combinations of information types in concurrent formats. Fifteen different combinations of concurrent information streams were investigated, and the subjective listening workload for each of the combination was measured using NASA-TLX.
DOI: 10.5281/zenodo.4905927
title: A living catalogue of artificial intelligence datasets and benchmarks for medical decision making

description: We provide a comprehensive curated catalogue of <strong>artificial intelligence datasets</strong> and <strong>benchmarks for medical decision making</strong>. At the time of first release (April 2021), the dataset contains more than 400 biomedical and clinical datasets of which 252 are publicly available or available upon request. The dataset was compiled based on a systematic literature review covering both biomedical and computer science literature and grey literature data sources. All datasets were manually systematized and annotated for meta-information, such as: Availability and licensing information Type of source data Links to source publications, main references or dataset repositories Benchmark dataset were additionally annotated for the following information: Associated task Performance metrics commonly used for evaluation Clinical relevance The availability of data splits In addition to the versioned TSV file on Zenodo, the dataset can also be explored live via this Google Spreadsheet. The dataset is intended as a living, extendable resource. Edit suggestions and additions are encouraged and can be submitted via the comment function of the Google sheet. <strong>File descriptions</strong> <em>annotated-datasets.tsv</em> -- contains the annotated datasets <em>arXiv-literature-export.tsv</em> -- contains the original literature record export from arXiv <em>pubmed-literature-export.tsv</em> -- contains the original literature record export from PubMed <em>README.md</em> -- contains a detailed description of all annotation fields
DOI: 10.5281/zenodo.4905869
title: Supporting data for: El Niño driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing

description: Dataset necessary to reproduce the analyses and results presented in the paper. Belliard, J.-P., Dominguez-Granda, L.E., Ramos-Veliz, J.A., Rosado-Moncayo, A.M., Nath, J., Govers G., Gourgue O. & Temmerman, S. (2021) El Niño driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing, published in Global and Planetary Change. The dataset contains:<br> • The Matlab scripts to perform the analysis of the raw tide gauge data.<br> • The processed data that are reported and represented in figures in the associated manuscript.<br> • The Matlab scripts to generate the figures of the manuscript.
description: This project was funded by the Research Foundation of Flanders, Belgium (FWO project number: G.0600.18N)
description: {"references": ["Belliard, J.-P., Dominguez-Granda, L. E., Ramos-Veliz, J. A., Rosado-Moncayo, A. M., Nath, J., Govers, G., Gourgue, O., & Temmerman, S. (2021). El Ni\u00f1o driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing. Global and Planetary Change, 103529. https://doi.org/10.1016/j.gloplacha.2021.103529"]}
DOI: 10.5281/zenodo.4444203
title: Supporting data for: El Niño driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing

description: Dataset necessary to reproduce the analyses and results presented in the paper. Belliard, J.-P., Dominguez-Granda, L.E., Ramos-Veliz, J.A., Rosado-Moncayo, A.M., Nath, J., Govers G., Gourgue O. & Temmerman, S. (2021) El Niño driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing, published in Global and Planetary Change. The dataset contains:<br> • The Matlab scripts to perform the analysis of the raw tide gauge data.<br> • The processed data that are reported and represented in figures in the associated manuscript.<br> • The Matlab scripts to generate the figures of the manuscript.
description: This project was funded by the Research Foundation of Flanders, Belgium (FWO project number: G.0600.18N)
description: {"references": ["Belliard, J.-P., Dominguez-Granda, L. E., Ramos-Veliz, J. A., Rosado-Moncayo, A. M., Nath, J., Govers, G., Gourgue, O., & Temmerman, S. (2021). El Ni\u00f1o driven extreme sea levels in an Eastern Pacific tropical river delta: Landward amplification and shift from oceanic to fluvial forcing. Global and Planetary Change, 103529. https://doi.org/10.1016/j.gloplacha.2021.103529"]}
DOI: 10.6084/m9.figshare.14743443
title: Supplementary Material for: Dermoscopic Predictors of Benignity and Malignancy in Equivocal Lesions Predominated by Blue Color

description: <b><i>Background:</i></b> Blue color in dermoscopy can be seen in a wide range of benign and malignant lesions, melanocytic or not. Some blue-colored dermoscopic criteria have been associated with specific tumors, such as blue-white veil with melanoma and homogeneous blue with blue nevi. However, when blue color occupies a large part of the lesion’s surface, the dermoscopic assessment might be particularly challenging. <b><i>Objective:</i></b> To identify dermoscopic predictors associated with benignity and malignancy in tumors characterized by a predominant dermoscopic presence of blue color. <b><i>Methods:</i></b> We retrospectively screened our institutional database for tumors exhibiting blue color in at least 50% of their surface with available histopathologic diagnosis. Lesions with blue color covering less than 50% of their extent and lesions not histopathologically assessed were excluded. The dermoscopic images were evaluated for the presence of predefined criteria, including the characteristics of the blue color, coexisting colors, and the vascular structures. <b><i>Results:</i></b> Of 91 included tumors, 53 were benign (35 blue nevi, 10 angiomas, and 8 seborrheic keratoses) and 38 malignant (12 melanomas and 26 basal cell carcinomas). Our analysis revealed 3 potent dermoscopic predictors of benignity: extension of blue color in more than 75% of the surface, diffuse distribution of blue color, and absence of vessels, posing a 2.3-fold, 5.6-fold, and 6.7-fold increased probability of benignity, respectively. In contrast, asymmetric distribution of blue color, blue clods, coexistence of gray color and linear vessels were significantly predictive of malignancy, posing a 8.9-fold, 2.8-fold, 13.5-fold, and 10.4-fold increased probability, respectively. <b><i>Conclusion:</i></b> In predominantly blue tumors, the probability of malignancy is high when blue color is seen in clods or is asymmetrically distributed and when gray color or linear vessels coexist. In contrast, a diffuse distribution of blue color, its expansion in more than 75% of the surface, and the absence of vessels are highly suggestive of a benign tumor.
DOI: 10.3886/e112497v1-88260
title: Replication data for: Compulsory Licensing: Evidence from the Trading with the Enemy Act

description: Compulsory licensing allows firms in developing countries to produce foreign-owned inventions without the consent of foreign patent owners. This paper uses an exogenous event of compulsory licensing after World War I under the Trading with the Enemy Act to examine the effects of compulsory licensing on domestic invention. Difference-in-differences analyses of nearly 130,000 chemical inventions suggest that compulsory licensing increased domestic invention by 20 percent. (JEL D45, L24, N42, O31, O34)
DOI: 10.15468/8an2jt
title: A new species of Hibiscus (Malvaceae) from Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pignal, Marc, Phillipson, Peter B. (2010): A new species of Hibiscus (Malvaceae) from Madagascar. Phytotaxa 14: 43-48, DOI: 10.11646/phytotaxa.14.1.3, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.14.1.3
DOI: 10.25720/veda-c15k
title: c-VEDA dataset
DOI: 10.25720/veda-c14j
title: c-VEDA dataset