cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ykmjj5bh4g.2
title: Intuitive decision-making in medicine across specialties and occupations

description: These data were collected for our empirical research about the prevalence and the determinants of intuitive decision-making (IDM) in clinical practice. The first data set was obtained from an on-line survey of Hungarian physicians, nurses, medical assistants, and other health care practitioners (N=688). The primary variable [IDM_practice] is a binary (yes / no) response to the following question: "Do you ever rely on intuition in your health care practice, i.e. do you ever make a decision which you feel right about but for which you cannot find a purely rational justification?" Another variable of interest [IDM_study] is a three-option (never / scarcely / extensively) response to the following question: "Was the topic of intuitive decision making in medicine ever discussed in your formal studies or at vocational trainings?" Additionally, the data set contains information about participants' demographic and occupational characteristics. The second data set (independent of the first one) was obtained from an on-line survey of Hungarian physicians (N=104), who were asked to rate 27 medical specialties on well-defined dimensions of 'complexity' and ‘likelihood of emergency’. 'Complexity' ratings (1 to 5) were given in response to the following question: "To what extent is a complex/integrative approach to dealing with patients necessary, requiring the consideration of multiple perceptual and diagnostic aspects along with a variety of treatment options?" 'Likelihood of emergency' ratings (1 to 5) were given in response to the following question: "How often do unexpected situations demanding immediate medical intervention arise?" We have formulated the following five testable research hypotheses: (1) Health care practitioners' propensity to rely on IDM increases with professional experience. (2) Higher responsibility occupations in health care are more conducive to IDM than lower responsibility occupations. (3) The more extensively a health care practitioners has been educated about the topic of IDM in medicine, the higher the probability that he/she will use it in his/her practice. (4) Health care practitioners occupied in medical specialties with ‘high likelihood of emergency’ have a greater propensity to rely on IDM than those occupied in specialties with lower likelihood of emergency. (5) Health care practitioners occupied in medical specialties of 'high complexity' have a greater propensity to rely on IDM than those occupied in specialties of lower complexity.
DOI: 10.17632/yv9s92r5rh.1
title: Lake Powell, Hite UT mud volcano gas analyses (2014-2016)

description: This data set contains information on the sampling, handling, and analysis of gas emitted from mud volcanoes along the Lake Powell marina delta. Samples were collected in 2014, 2015, and 2016.
DOI: 10.17632/4455hbjb9g.1
title: Pv-X raw data

description: Raw data from scientific article "Plasmodium vivax chloroquine resistance links to pvcrt transcription in a genetic cross" by Sa JM et al, under review by Nature Communications. The study describes the first laboratory genetic cross between Plasmodium vivax parasites completed in vivo because this parasite cannot be cultivated in vitro continuously. To generate infectious gametes (gametocytes) from the parasite blood stages for cross-fertilization in Anopheles mosquitoes, a chimpanzee received fresh infected blood from two New Word monkeys. New World monkeys develop blood stages from some P. vivax lines, but the gametocytes are poorly transmitted to mosquitoes. To allow a large variety of recombinants to develop in mosquitoes we performed 6 feedings using various Anopheles species, dissected midgut to assess presence and number of oocysts in infected mosquitoes, then extracted recombinant sporozoites from mosquito salivary glands. These sporozoites were cryopreserved for six months to allow immunity decrease in the chimpanzee from the first blood stage inoculation. After this period, different batches of sporozoites were thawed and inoculated into the chimpanzee to allow liver stage development and recovery of blood stage recombinant progeny. After recovery of a diverse progeny, these were phenotyped and genotyped in New World monkeys, which allow measurement of parasite response to the antimalarial chloroquine. Linkage mapping of progeny surviving &gt;15 mg/kg CQ identifies a 76 kb region in chromosome 1 including pvcrt, an ortholog of the Plasmodium falciparum CQR transporter gene. Transcriptional analysis supports upregulated pvcrt expression as a mechanism of CQR.
DOI: 10.17632/b4v56pydyd.1
title: Set of data of the article localized modes in one-dimensional photonic crystals made of conventional materials and metamaterials

description: Based on the formalism of the transfer matrix for the calculation of the photonic propagator, localized modes at the interface that separates a uniform dielectric medium and a semi-infinite one-dimensional photonic crystal, made of alternate conventional isotropic materials and metamaterials are investigated. The data correspond to the physical properties of the materials and their geometric parameters. Data were collected from articles [1-3]: [1] A. Namdar. Optics Comm. Elsevier. 278 (2007) 194-198. https://doi.org/10.1016/j.optcom.2007.05.063. [2] J. Barvestani. Optics Communications 284 (2011) 231-235 doi:10.1016/j.optcom.2010.08.053. [3] H.Y. Sang, Z.Y. Li, B.Y. Gu, Phys. Lett. A 331 (2004) 414 https://doi. .org/:10.1063/1.171927184
DOI: 10.17632/gt3f4jnbvn.1
title: GitHub training and test data-sets

description: This dataset contains the SQL tables of the training and test datasets used in our experimentation. These tables contain the preprocessed textual data (in a form of tokens) extracted from each training and test project. Besides the preprocessed textual data, this dataset also contains meta-data about the projects, GitHub topics, and GitHub collections. The GitHub projects are identified by the tuple “Owner” and “Name”. The descriptions of the table fields are attached to their respective data descriptions.
DOI: 10.17632/szsj7rgwcp.1
title: DeRango_2019_Galapagos_sea_lion_boldness_exploration_coping

description: Behavioral data derived from novel object tests (principle component analysis) and responses to capture (struggle and escape, random slopes analysis) from Galapagos sea lion pups 2017 and 2018.
DOI: 10.5519/qd.3j75qxk0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (39451 records)
DOI: 10.17632/htdnfjb22c.2
title: Zebrafish (Danio rerio) neural crest cell RNA-sequencing
DOI: 10.17632/htdnfjb22c.3
title: Zebrafish (Danio rerio) neural crest cell RNA-sequencing
DOI: 10.17632/sr567vff6p.1
title: Monitoring Diffuse Injury in the EAE model for MS using CEST MRI

description: Comparison of MRI methods to predict and monitor disease progression in a multiple sclerosis mouse model. T1w/FLASH, T2w, T2*w, and metabolite-sensitive chemical exchange saturation transfer (CEST) MRI values (.xls) were acquired in the chronic experimental autoimmune encephalomyelitis (EAE) model (C57Bl/6, female, 6-10 weeks old, active induction against myelin antigen MOG35-55) at multiple regions of the brain and spinal cord (.ppt) over the course of the disease as paralysis progressed. CEST methods include the continuous wave (CW, at the 0-4 ppm frequencies), amide proton transfer (APT, at 3.6 ppm), and on resonance variable delay multiple pulse (onVDMP, at 0 ppm).
DOI: 10.17632/szsj7rgwcp.2
title: DeRango_2019_Galapagos_sea_lion_boldness_exploration_coping

description: Behavioral data derived from novel object tests (principle component analysis) and responses to capture (struggle and escape, random slopes analysis) from Galapagos sea lion pups 2017 and 2018.
DOI: 10.5519/qd.r7ziouk2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1471348 records)
DOI: 10.17632/c7bdz8dbd7.1
title: DIMENSIONAL CHANGES AND TISSUE STABILITY FOR ORAL REHABILITATION AFTER CLINICAL CROWN LENGTHENING: A SYSTEMATIC REVIEW
DOI: 10.17632/g6dfrzm28n.1
title: Doldor, Wyatt & Silvester: Statesmen or Cheerleaders
DOI: 10.5281/zenodo.3357669
title: Variation of saturation across hue affects unique and typical hue choices

description: This Excel-file contains the individual data for the article: Witzel (2019) Variation of saturation across hue affects unique and typical hue choices, <em>iperception</em>. 1. Sheet "Participants": gender and age of participants 2. Sheet "Stimuli": Munsell specifications for the stimuli in each set; the set is identified in the first raw. The specifications correspond to table A1 in the Appendix of the article. The other six sheets contain the actual data with each row corresponding to one participant as in sheet "Participants". For red, note that participants 1 to 10 were presented with the first version of the red stimulus sets, the others with the second version. 3. Prototype choices with set1 4. Prototype choices with set2 5. Unique hue choices with set1 6. Unique hue choices with set1 7. Binary hue choices with set1 8. Binary hue choices with set1
DOI: 10.5281/zenodo.3357670
title: Variation of saturation across hue affects unique and typical hue choices

description: This Excel-file contains the individual data for the article: Witzel (2019) Variation of saturation across hue affects unique and typical hue choices, <em>iperception</em>. 1. Sheet "Participants": gender and age of participants 2. Sheet "Stimuli": Munsell specifications for the stimuli in each set; the set is identified in the first raw. The specifications correspond to table A1 in the Appendix of the article. The other six sheets contain the actual data with each row corresponding to one participant as in sheet "Participants". For red, note that participants 1 to 10 were presented with the first version of the red stimulus sets, the others with the second version. 3. Prototype choices with set1 4. Prototype choices with set2 5. Unique hue choices with set1 6. Unique hue choices with set1 7. Binary hue choices with set1 8. Binary hue choices with set1
DOI: 10.3886/e110961v3
title: Reading Motivation and Book Reading

description: In comparison with younger children, older students tend to be less motivated to read. A literature class that fails to motivate students is one aspect that has often been discussed in this regard. Using data from 405 German ninth graders, we examined how students’ book reading is related to intrinsic situational and intrinsic habitual reading motivation in and out of school. The books that students reported to have read were characterized by LIX readability and text type. Our results first showed that recreational reading motivation exceeded school reading motivation. Second, the reading of classic literature was a negative predictor of intrinsic situational reading motivation. Third, in the school context, students who read more difficult books were less motivated to read them. Fourth, analyses showed that individual book-reading experiences were linked to intrinsic habitual reading motivation. We discuss practical implications for book reading in and out of the literature class.<br>
DOI: 10.25919/5d42415a8b9cf
title: Parkes observations for project P958 semester 2019APRS_55

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until a few months ago, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 28 bursts, two of which have been localised to host galaxies at redshifts &gt; 0.3. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. Over the next six months we expect to detect another 12 FRBs, which will also have sub-arcsecond localisations. Here we propose to search this population for repeats. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.5281/zenodo.3357661
title: Microscope Image Analysis Course Sept 2109 -- Image Data siRNA Screen

description: Contains 380 Fluorescence images of DAPI stained HeLa nuclei, acquired in 42 wells of a 384 well plate. individual wells were treated with siRNA according to the layout file. Images were acquired with an Olympus ScanR system at 10x magnification, maetadata is given in the experiment_descriptor.xml file.
DOI: 10.5281/zenodo.3357662
title: Microscope Image Analysis Course Sept 2109 -- Image Data siRNA Screen

description: Contains 380 Fluorescence images of DAPI stained HeLa nuclei, acquired in 42 wells of a 384 well plate. individual wells were treated with siRNA according to the layout file. Images were acquired with an Olympus ScanR system at 10x magnification, maetadata is given in the experiment_descriptor.xml file.
DOI: 10.5281/zenodo.3357761
title: Microsatellite genotypes of South African Cape vulture (Gyps coprotheres)

description: Multilocus microsatellite genotypes of 605 <em>Gyps coprotheres</em> individuals. This first column contains the individual sample identity as provided in Supplementary Data 1 and subsequent columns are allele scores in single row format. Alleles are scored according to their molecular size (in base pairs); missing data is encoded as "0".
DOI: 10.17632/gn2zp9wtwh.1
title: Data for: Field performance of two on-site wastewater treatment systems using reactive media layers for nutrient and pathogen removal

description: The worksheets attached are related to the data collected in Maryhill and Parelheiros wastewater treatment systems.
DOI: 10.17632/pvmcht7kbp.1
title: Data for: Field performance of two on-site wastewater treatment systems using reactive media layers for nutrient and pathogen removal

description: The worksheets attached referred to data collected in Maryhill and Parelheiros wastewater treatment systems.
DOI: 10.15129/bfe28d6e-3cf1-4089-93a6-d997cbd7dcb7
title: Dataset for: “A hybrid laser ablation and chemical etching process for manufacturing nature-inspired anisotropic superhydrophobic structures”

description: Original Excel data of Figure 4 in the conference abstract
DOI: 10.5281/zenodo.3355910
title: Simulated dataset (Almeida et al., 2018 - GigaScience) treated with various clustering programs to evaluate ReClustOR efficiency and constitency

description: ReClustOR is a novel clustering method that overcomes some of the problems associated with classical ‘<em>heuristic’</em>clustering methods and consequently increases the stability and quality of the reconstructed OTUs. Moreover, the OTUs database defined with ReClustOR can be used as reference(s) with gradual enrichment of it, with new studies and samples. In this way, huge datasets like<em> </em>the Earth Microbiome Project can be easily used as references for smaller projects, thereby increasing the quality of comparisons between studies and datasets Here, we propose a new approach called ReClustOR (for RE-CLUSTering method using an Open-Reference approach) to improve OTU consistency (see https://doi.org/10.5281/zenodo.2597402). This new strategy combines two of the previously-described clustering methods. Firstly, a classical clustering<em> </em>method (<em>e.g. </em>SWARM, or VSEARCH) is used to define OTU centroids and create a reference database. Secondly, a closed- or open-reference method (depending on the user’s choice) is computed for all reads which are not considered as OTU centroids. Contrary to the classical clustering methods, each read is compared to all centroids using a distance-based greedy clustering technique (Edgar, 2010; He et al., 2015), and then assigned to the nearest one, thereby fixing the erroneous assignments of reads to OTUs. To highlight the improvements provided by ReClustOR in describing microbial diversity in terms of ecological diversity metrics (<em>e.g. </em>richness, OTU composition, Shannon, 1/Simpson) and taxonomic composition, a simulated dataset was subjected to: (i) ESV definition, (ii) multiple conventional <em>de novo</em> methods (<em>i.e.</em> a homemade <em>de novo </em>clustering close to CRUNCHCLUST, VSEARCH and SWARM), and (iii) ReClustOR computation. This dataset is a simulated one (Almeida et al., 2018), containing a diverse set of <em>genera</em> commonly found in three ecosystems different ecosystems: human gut, ocean and soil. The clustering methods were compared for: (i) their ability to describe microbial richness, (ii) the congruence between OTU assignments and sequences taxonomy, (iii) the robustness of each defined OTU, and (iv) their ability to efficiently describe the microbial community based on OTU composition. Here, the simulated dataset (00_Raw_data) and all steps of analysis are available to resue them to test ReClustOR, and also to have a better understanding of files and data produced by this program. More details are available in the Tree_of_data.tree file.
description: {"references": ["Alexandre Almeida, Alex L Mitchell, Aleksandra Tarkowska, Robert D Finn, Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments, GigaScience, Volume 7, Issue 5, May 2018, giy054, https://doi.org/10.1093/gigascience/giy054"]}
DOI: 10.5281/zenodo.3355911
title: Simulated dataset (Almeida et al., 2018 - GigaScience) treated with various clustering programs to evaluate ReClustOR efficiency and constitency

description: ReClustOR is a novel clustering method that overcomes some of the problems associated with classical ‘<em>heuristic’</em>clustering methods and consequently increases the stability and quality of the reconstructed OTUs. Moreover, the OTUs database defined with ReClustOR can be used as reference(s) with gradual enrichment of it, with new studies and samples. In this way, huge datasets like<em> </em>the Earth Microbiome Project can be easily used as references for smaller projects, thereby increasing the quality of comparisons between studies and datasets Here, we propose a new approach called ReClustOR (for RE-CLUSTering method using an Open-Reference approach) to improve OTU consistency (see https://doi.org/10.5281/zenodo.2597402). This new strategy combines two of the previously-described clustering methods. Firstly, a classical clustering<em> </em>method (<em>e.g. </em>SWARM, or VSEARCH) is used to define OTU centroids and create a reference database. Secondly, a closed- or open-reference method (depending on the user’s choice) is computed for all reads which are not considered as OTU centroids. Contrary to the classical clustering methods, each read is compared to all centroids using a distance-based greedy clustering technique (Edgar, 2010; He et al., 2015), and then assigned to the nearest one, thereby fixing the erroneous assignments of reads to OTUs. To highlight the improvements provided by ReClustOR in describing microbial diversity in terms of ecological diversity metrics (<em>e.g. </em>richness, OTU composition, Shannon, 1/Simpson) and taxonomic composition, a simulated dataset was subjected to: (i) ESV definition, (ii) multiple conventional <em>de novo</em> methods (<em>i.e.</em> a homemade <em>de novo </em>clustering close to CRUNCHCLUST, VSEARCH and SWARM), and (iii) ReClustOR computation. This dataset is a simulated one (Almeida et al., 2018), containing a diverse set of <em>genera</em> commonly found in three ecosystems different ecosystems: human gut, ocean and soil. The clustering methods were compared for: (i) their ability to describe microbial richness, (ii) the congruence between OTU assignments and sequences taxonomy, (iii) the robustness of each defined OTU, and (iv) their ability to efficiently describe the microbial community based on OTU composition. Here, the simulated dataset (00_Raw_data) and all steps of analysis are available to resue them to test ReClustOR, and also to have a better understanding of files and data produced by this program. More details are available in the Tree_of_data.tree file.
description: {"references": ["Alexandre Almeida, Alex L Mitchell, Aleksandra Tarkowska, Robert D Finn, Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments, GigaScience, Volume 7, Issue 5, May 2018, giy054, https://doi.org/10.1093/gigascience/giy054"]}
DOI: 10.21227/re75-dt75
title: Breathing data from a piezoresistive breathing sensor

description: A new wearable sensing system of respiration rate based on a piezoresistive FlexiForce sensor has been developed. The 3D casing of the system has been designed and printed with a 3D printer. The design of the casing has a direct impact on sensor accuracy. The casing was designed to house all elements of the sensing system in a compact way: microcontroller, battery, conditioning circuit, Bluetooth module and battery charger. The sensing system was validated with eight subjects using a metronome as a reference. The sensor was worn in the chest at the level of the diaphragm through a chest strap. Six different values of breaths per minute (BPM) were assessed: 10, 12.5, 15, 17.5, 20 and 22.5 BPM. Subjects were requested to perform ten breaths for each reference value at the rhythm of the metronome. This dataset includes the raw voltage signals recorded during the validation experiments. It is organized in eight folders (1 per subject). Each folder contains six different text files (1 per reference value). In total, this dataset comprises 48 files of breathing signals.
DOI: 10.21227/zcqc-3h94
title: Breathing data from a piezoresistive breathing sensor

description: A new wearable sensing system of respiration rate based on a piezoresistive FlexiForce sensor has been developed. The 3D casing of the system has been designed and printed with a 3D printer. The design of the casing has a direct impact on sensor accuracy. The casing was designed to house all elements of the sensing system in a compact way: microcontroller, battery, conditioning circuit, Bluetooth module and battery charger. The sensing system was validated with eight subjects using a metronome as a reference. The sensor was worn in the chest at the level of the diaphragm through a chest strap. Six different values of breaths per minute (BPM) were assessed: 10, 12.5, 15, 17.5, 20 and 22.5 BPM. Subjects were requested to perform ten breaths for each reference value at the rhythm of the metronome. This dataset includes the raw voltage signals recorded during the validation experiments. It is organized in eight folders (1 per subject). Each folder contains six different text files (1 per reference value). In total, this dataset comprises 48 files of breathing signals.
DOI: 10.17632/k447h4zghm.1
title: Data for: Terrestrial environmental change across the onset of the PETM and the associated impact on biomarker proxies: a cautionary tale

description: The following supplementary information includes an additional figure (Figure S1) and datasets. Dataset S1, which is uploaded separately, contains 3 tables: Table 1: Biomarker distributions and proxies at Cobham, UK Table 2: Bulk and compound specific isotope data at Cobham (UK) Table 3: Model-derived mean annual surface temperature and precipitation estimates as a function of CO2 at Cobham (UK).
DOI: 10.5523/bris.2t6be42vab8ni2f3bxpu2vrwj0
title: Dataset_Kafodya et al._JOBE_2019

description: This dataset contains all the information to reproduce the curves and figures in the JOBE 2019 journal publication titled: "Role of fiber inclusion in adobe masonry construction", by Kafodya, I., Okonta F. and Kloukinas, P.