cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6ehkrw
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachycladon wallii"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013346-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrqmzn
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba glomerata"
 ]
}

 The dataset includes 200 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013347-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29602418
title: Supplemental files to the study "Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins"

description: Thirty to seventy percent of proteins in any given genome have no assigned function and have been labeled as the protein “unknome”. This large knowledge shortfall is one of the final frontiers of biology. Machine-Learning (ML) approaches are enticing, with early successes demonstrating the ability to propagate functional knowledge from experimentally characterized proteins. An open question is the ability of machine-learning approaches to predict enzymatic functions unseen in the training sets. Using a set of <i>E. coli</i> unknowns, we evaluated the current state-of-the-art machine-learning approaches and found that these methods currently lack the ability to integrate scientific reasoning into their prediction algorithms. While human annotators are able to leverage the plethora of genomic data in making plausible predictions into the unknown, current ML methods not only fail to make novel predictions but also make basic logic errors in their predictions. This underscores the need to further develop ML methods and to deploy deterministic approaches to test for ‘hallucinations’ and other aberrant behavior in the current generation of predictive modeling. eXplainable AI (XAI) analysis revealed that noisy, ambiguous, or low contribution profiles across the protein sequence are strong indicators of unreliable predictions, enabling systematic identification of potential errors and elimination of most uncertain predictions. These findings demonstrate the value of integrating XAI-driven filtering strategies to improve the reliability of machine-learning-based protein annotation.
DOI: 10.6084/m9.figshare.29602418.v2
title: Supplemental files to the study "Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins"

description: Thirty to seventy percent of proteins in any given genome have no assigned function and have been labeled as the protein “unknome”. This large knowledge shortfall is one of the final frontiers of biology. Machine-Learning (ML) approaches are enticing, with early successes demonstrating the ability to propagate functional knowledge from experimentally characterized proteins. An open question is the ability of machine-learning approaches to predict enzymatic functions unseen in the training sets. Using a set of <i>E. coli</i> unknowns, we evaluated the current state-of-the-art machine-learning approaches and found that these methods currently lack the ability to integrate scientific reasoning into their prediction algorithms. While human annotators are able to leverage the plethora of genomic data in making plausible predictions into the unknown, current ML methods not only fail to make novel predictions but also make basic logic errors in their predictions. This underscores the need to further develop ML methods and to deploy deterministic approaches to test for ‘hallucinations’ and other aberrant behavior in the current generation of predictive modeling. eXplainable AI (XAI) analysis revealed that noisy, ambiguous, or low contribution profiles across the protein sequence are strong indicators of unreliable predictions, enabling systematic identification of potential errors and elimination of most uncertain predictions. These findings demonstrate the value of integrating XAI-driven filtering strategies to improve the reliability of machine-learning-based protein annotation.
DOI: 10.6084/m9.figshare.29602418.v1
title: Supplementary Table S1 to S4 v250529.xlsx

description: Protein families analyzed in the study "Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins"Authors: Valérie de Crécy-Lagard, Raquel Dias, Nick Sexson, Iddo Friedberg, Yifeng Yuan<sup> </sup>and Manal A. Swairjo
DOI: 10.15468/dl.x2cbap
title: Occurrence Download

description: A dataset containing 7808 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grona adscendens"
 ]
}

 The dataset includes 7808 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013345-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrmv9a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuta absoluta",
 "Country is Benin",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013348-250717081556266/datasets/export for details.
DOI: 10.15468/dl.drr2eb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuta absoluta",
 "Country is Mozambique",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013349-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qa4x6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013350-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd4mtm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fagopyrum acutatum",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013351-250717081556266/datasets/export for details.
DOI: 10.15468/dl.79n7p2
title: Occurrence Download

description: A dataset containing 12810 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Verbena stricta"
 ]
}

 The dataset includes 12810 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013352-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/iw73uu/ubl6gs
title: QAS_A_day.nc

description: Uploaded with pyDataverse 2026-02-16 14:35
DOI: 10.22008/fk2/iw73uu/lzpvag
title: QAS_A_month.csv

description: Uploaded with pyDataverse 2026-02-16 14:36
DOI: 10.22008/fk2/iw73uu/3i6k3m
title: QAS_A_hour.nc

description: Uploaded with pyDataverse 2026-02-16 14:36
DOI: 10.22008/fk2/iw73uu/ltymzp
title: SER_B_hour.csv

description: Uploaded with pyDataverse 2026-02-16 14:37
DOI: 10.22008/fk2/iw73uu/m217my
title: SER_B_month.csv

description: Uploaded with pyDataverse 2026-02-16 14:37
DOI: 10.22008/fk2/iw73uu/qnvi8o
title: SER_B_month.nc

description: Uploaded with pyDataverse 2026-02-16 14:37
DOI: 10.22008/fk2/iw73uu/h6iurq
title: SER_B_day.csv

description: Uploaded with pyDataverse 2026-02-16 14:38
DOI: 10.22008/fk2/iw73uu/a8rmls
title: SER_B_hour.nc

description: Uploaded with pyDataverse 2026-02-16 14:38
DOI: 10.22008/fk2/iw73uu/cgnxdl
title: SER_B_day.nc

description: Uploaded with pyDataverse 2026-02-16 14:39
DOI: 10.22008/fk2/iw73uu/805okc
title: HUM_month.nc

description: Uploaded with pyDataverse 2026-02-16 14:39
DOI: 10.22008/fk2/iw73uu/afwkep
title: HUM_hour.csv

description: Uploaded with pyDataverse 2026-02-16 14:39
DOI: 10.22008/fk2/iw73uu/kzegs8
title: HUM_month.csv

description: Uploaded with pyDataverse 2026-02-16 14:41
DOI: 10.15468/dl.mfdegw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlegmacium pseudonebulare"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024570-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r92cg
title: Occurrence Download

description: A dataset containing 4034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Specimen, Material sample, Occurrence evidence, Living Specimen)",
 "Geometry POLYGON((-77.17444 -12.05293,-77.08635 -12.20096,-76.96667 -12.27542,-76.90182 -12.26941,-76.93422 -12.21814,-76.93744 -12.17331,-76.95902 -12.0891,-77.01934 -11.9944,-77.04834 -11.96306,-77.12734 -11.97927,-77.17444 -12.05293))",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 4034 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024567-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3093907/2559741
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093908/2559742
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093909/2559743
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093910/2559744
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093911/2559745
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093912/2559746
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093913/2559747
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093914/2559748
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093915/2559749
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.pzhatk
title: Occurrence Download

description: A dataset containing 361429740 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 361429740 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000109-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v34uq5
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indigofera heterotricha DC."
 ]
}

 The dataset includes 664 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031784-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.396gdq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030873-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxomh6
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022940-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4zjhe
title: Occurrence Download

description: A dataset containing 24638398 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 24638398 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209287-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgzsg2
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylotelephium cauticola (Praeger) H.Ohba"
 ]
}

 The dataset includes 105 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031792-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwhxwr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030898-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqs9gq
title: Occurrence Download

description: A dataset containing 335358771 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantae"
 ]
}

 The dataset includes 335358771 records from 6704 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221257-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9depf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is AIMSurv Aedes Invasive Mosquito species harmonized surveillance in Europe. AIM-COST Action",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214461-230224095556074/datasets/export for details.
DOI: 10.15468/dl.gn73gx
title: Occurrence Download

description: A dataset containing 8230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus maritimus Phipps, 1774"
 ]
}

 The dataset includes 8230 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226132-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnfug5
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sesbania sudanica J.B.Gillett"
 ]
}

 The dataset includes 104 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126498-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6tjax4
title: Occurrence Download

description: A dataset containing 3564 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ischnocnema Reinhardt & Lütken, 1862"
 ]
}

 The dataset includes 3564 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216300-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytj39s
title: Occurrence Download

description: A dataset containing 1131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is INNS Data: All Taxa (South East Wales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 1131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226139-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gaxbwa
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is Observations naturalistes indépendantes d'origine privée partagées sur la base de données Kollect Nouvelle-Aquitaine-Observations faunistiques de Thomas GACHET",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214455-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esfze2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rondonanthus flabelliformis (Moldenke) Hensold & Giul."
 ]
}

 The dataset includes 11 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104853-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25a7uw
title: Occurrence Download

description: A dataset containing 2593837 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 2023 Contributions of Plant Specimen Data inside China"
 ]
}

 The dataset includes 2593837 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216293-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txmz38
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentianella cerina (Hook.fil.) T.N.Ho & S.W.Liu"
 ]
}

 The dataset includes 101 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226149-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5z9xsb
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rondonanthus capillaceus (Klotzsch ex Körn.) Hensold & Giul."
 ]
}

 The dataset includes 220 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104847-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgvrdx
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is Visiolittoral : Base de données de la communauté de travail du Conservatoire du littoral-Visiolittoral : surveillance naturaliste des sites du Conservatoire du littoral",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 333 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214457-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfqjm5
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festuca punctoria Sm."
 ]
}

 The dataset includes 46 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216302-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4r6mn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocercospora pyracanthae (Katsuki) C.Nakash. & Tak.Kobay.",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104850-230530130749713/datasets/export for details.
DOI: 10.15468/dl.x8k2h8
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Hyperbenthos community in the salt marsh of Saeftinghe in 1990 and 1991",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 269 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226135-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj9zjp
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is La Planète revisitée - Corse 2019-2022-La Planète Revisitée Corse : observations lors des phases de reconnaissance et d'installation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214458-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.