cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60893/figshare.jcp.28742084
title: Additional Supplementary Materials

description: Supplementary folder includes the ammonia ACE interatomic potential (NH3_pot.yace), AI-MD-calculated equation of state data for solid and liquid ammonia (NH3_dft_eos.txt), the final DFT training database used to develop the potential (NH_structures-training_DB.pckl.gzip), and an example LAMMPS input file for NVT simulations (in.nvt+NH_pot.mod).
DOI: 10.60893/figshare.jcp.28742084.v1
title: Additional Supplementary Materials

description: Supplementary folder includes the ammonia ACE interatomic potential (NH3_pot.yace), AI-MD-calculated equation of state data for solid and liquid ammonia (NH3_dft_eos.txt), the final DFT training database used to develop the potential (NH_structures-training_DB.pckl.gzip), and an example LAMMPS input file for NVT simulations (in.nvt+NH_pot.mod).
DOI: 10.60635/c3nw2j
title: Physical Monitoring Program metadata for the Bocas del Toro marine station

description: The file provides a record of most maintenance activities related to the Physical Monitoring Program's Bocas del Toro marine stationActivities include: equipment replacements, sensor maintenance, data logger programming, cleaning, new installations, and general observations.
DOI: 10.6084/m9.figshare.26507211.v1
title: Additional file 1 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 1: Table S1. Count table. Read count data before normalization.
DOI: 10.6084/m9.figshare.26507305.v1
title: Additional file 2 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 2: Table S2. Rapamycin main effect differential expression analysis. Results of the DESeq2 analysis of contrasts between control and rapamycin treatments for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26507305
title: Additional file 2 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 2: Table S2. Rapamycin main effect differential expression analysis. Results of the DESeq2 analysis of contrasts between control and rapamycin treatments for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26758327
title: Additional file 3 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 3: Table S3. GO enrichment analysis of genes differentially expressed by rapamycin as a main effect. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26758327.v1
title: Additional file 3 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 3: Table S3. GO enrichment analysis of genes differentially expressed by rapamycin as a main effect. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26758330
title: Additional file 4 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 4: Table S4. Sex-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the sex-by-treatment interaction for each tissue. Also includes rapamycin main effect log2 fold changes from Table S2.
DOI: 10.6084/m9.figshare.26758330.v1
title: Additional file 4 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 4: Table S4. Sex-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the sex-by-treatment interaction for each tissue. Also includes rapamycin main effect log2 fold changes from Table S2.
DOI: 10.6084/m9.figshare.26758333
title: Additional file 5 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 5: Table S5. Enrichment analysis of genes with significant Sex-by-Treatment interaction terms. Results of the clusterProfiler analyses (enrichGO followed by simplify function for GO enrichment, enrichKEGG for KEGG enrichment, GSEA function for GSEA) for each tissue.
DOI: 10.6084/m9.figshare.26758333.v1
title: Additional file 5 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 5: Table S5. Enrichment analysis of genes with significant Sex-by-Treatment interaction terms. Results of the clusterProfiler analyses (enrichGO followed by simplify function for GO enrichment, enrichKEGG for KEGG enrichment, GSEA function for GSEA) for each tissue.
DOI: 10.6084/m9.figshare.26758336
title: Additional file 6 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 6: Table S6. Tissue-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the 3 tissue-by-treatment interactions (head vs. thorax, thorax vs. abdomen, and abdomen vs. head) for each sex.
DOI: 10.6084/m9.figshare.26758336.v1
title: Additional file 6 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 6: Table S6. Tissue-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the 3 tissue-by-treatment interactions (head vs. thorax, thorax vs. abdomen, and abdomen vs. head) for each sex.
DOI: 10.6084/m9.figshare.26758339
title: Additional file 7 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 7: Table S7. GO enrichment analysis of genes with significant Tissue-by-Treatment interaction terms. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for the 3 tissue-by-treatment interactions (head vs. thorax, thorax vs. abdomen, and abdomen vs. head) for each sex.
DOI: 10.6084/m9.figshare.26758339.v1
title: Additional file 7 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 7: Table S7. GO enrichment analysis of genes with significant Tissue-by-Treatment interaction terms. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for the 3 tissue-by-treatment interactions (head vs. thorax, thorax vs. abdomen, and abdomen vs. head) for each sex.
DOI: 10.6084/m9.figshare.26758342
title: Additional file 8 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 8: Table S8. Rapamycin main effect differential expression analysis separated by mitonuclear genotype. Results of the DESeq2 analysis of contrasts between control and rapamycin treatments for each sex-tissue-mitonuclear genotype combination.
DOI: 10.6084/m9.figshare.26758342.v1
title: Additional file 8 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 8: Table S8. Rapamycin main effect differential expression analysis separated by mitonuclear genotype. Results of the DESeq2 analysis of contrasts between control and rapamycin treatments for each sex-tissue-mitonuclear genotype combination.
DOI: 10.6084/m9.figshare.26758345
title: Additional file 9 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 9: Table S9. GO enrichment analysis of genes differentially expressed by rapamycin as a main effect separated by mitonuclear genotype. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for each sex-tissue-mitonuclear genotype combination.
DOI: 10.6084/m9.figshare.26758345.v1
title: Additional file 9 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 9: Table S9. GO enrichment analysis of genes differentially expressed by rapamycin as a main effect separated by mitonuclear genotype. Results of the clusterProfiler analyses (enrichGO followed by simplify functions) for each sex-tissue-mitonuclear genotype combination.
DOI: 10.6084/m9.figshare.26758348
title: Additional file 10 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 10: Table S10. mtDNA-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the mtDNA-by-treatment interaction for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26758348.v1
title: Additional file 10 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 10: Table S10. mtDNA-by-Treatment effect differential expression analysis. Results of the DESeq2 analysis of the mtDNA-by-treatment interaction for each sex-tissue combination.
DOI: 10.6084/m9.figshare.26758351
title: Additional file 11 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 11: Table S11. mtDNA-by-Treatment effect differential expression analysis of the Santiago et al. 2021 dataset. Results of the DESeq2 analysis and the clusterProfiler enrichment analysis of the mtDNA-by-treatment interaction after 4 hours of treatment.
DOI: 10.6084/m9.figshare.26758351.v1
title: Additional file 11 of Sex, tissue, and mitochondrial interactions modify the transcriptional response to rapamycin in Drosophila

description: Supplementary Material 11: Table S11. mtDNA-by-Treatment effect differential expression analysis of the Santiago et al. 2021 dataset. Results of the DESeq2 analysis and the clusterProfiler enrichment analysis of the mtDNA-by-treatment interaction after 4 hours of treatment.
DOI: 10.6084/m9.figshare.26758520
title: Additional file 3 of Willingness to participate in a personalized health cohort – insights from the swiss health study pilot phase

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26758520.v1
title: Additional file 3 of Willingness to participate in a personalized health cohort – insights from the swiss health study pilot phase

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26517902
title: Additional file 2 of Transcriptomic changes and gene fusions during the progression from Barrett’s esophagus to esophageal adenocarcinoma

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26758535
title: Additional file 3 of Transcriptomic changes and gene fusions during the progression from Barrett’s esophagus to esophageal adenocarcinoma

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26758535.v1
title: Additional file 3 of Transcriptomic changes and gene fusions during the progression from Barrett’s esophagus to esophageal adenocarcinoma

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26758538
title: Additional file 4 of Transcriptomic changes and gene fusions during the progression from Barrett’s esophagus to esophageal adenocarcinoma

description: Supplementary Material 4
DOI: 10.5517/ccp7gly
title: CCDC 632790: Experimental Crystal Structure Determination

description: Related Article: Zhenghong Luo, Hua Cheng, Wei Xu|2010|Chin.J.Chem.|28|303|doi:10.1002/cjoc.201090071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccp7gmz
title: CCDC 632791: Experimental Crystal Structure Determination

description: Related Article: Zhenghong Luo, Hua Cheng, Wei Xu|2010|Chin.J.Chem.|28|303|doi:10.1002/cjoc.201090071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.36074.18881
title: „Digital Streetwork“ in Berlin auf neue Wege 2021
DOI: 10.5517/ccs0t8v
title: CCDC 715767: Experimental Crystal Structure Determination

description: Related Article: D.Balducci, I.Lazzari, M.Monari, F.Piccinelli, G.Porzi|2010|Amino Acids|38|829|doi:10.1007/s00726-009-0289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0t9w
title: CCDC 715768: Experimental Crystal Structure Determination

description: Related Article: D.Balducci, I.Lazzari, M.Monari, F.Piccinelli, G.Porzi|2010|Amino Acids|38|829|doi:10.1007/s00726-009-0289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0tbx
title: CCDC 715769: Experimental Crystal Structure Determination

description: Related Article: D.Balducci, I.Lazzari, M.Monari, F.Piccinelli, G.Porzi|2010|Amino Acids|38|829|doi:10.1007/s00726-009-0289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs0tcy
title: CCDC 715770: Experimental Crystal Structure Determination

description: Related Article: D.Balducci, I.Lazzari, M.Monari, F.Piccinelli, G.Porzi|2010|Amino Acids|38|829|doi:10.1007/s00726-009-0289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.11852.08326
title: Dress #16 (La Dame à la licorne)
DOI: 10.13140/rg.2.2.25273.85608
title: Dress #17 (La Dame à la licorne)
DOI: 10.15468/dl.h8s27z
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-82.5 -30,-75 -30,-75 -22.5,-82.5 -22.5,-82.5 -30))"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046653-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccrd0fk
title: CCDC 696738: Experimental Crystal Structure Determination

description: Related Article: E.A.Katayev, G.V.Kolesnikov, V.N.Khrustalev, M.Yu.Antipin, R.K.Askerov, A.M.Maharramov, K.E.German, G.A.Kirakosyan, I.G.Tananaev, T.V.Timofeeva|2009|J.Radioanalytical Nucl.Chem.|282|385|doi:10.1007/s10967-009-0172-x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvhg6z
title: CCDC 789421: Experimental Crystal Structure Determination

description: Related Article: R.den Heeten, E.Zuidema, M.Lutz, A.L.Spek, P.W.N.M.van Leeuwen, P.C.J.Kamer|2011|J.Organomet.Chem.|696|3113|doi:10.1016/j.jorganchem.2011.06.019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4gq4f
title: CCDC 133304: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctxgx2
title: CCDC 772145: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctxgy3
title: CCDC 772146: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctxgz4
title: CCDC 772147: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.qgvyat
title: Occurrence Download

description: A dataset containing 3346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-75 -30,-67.5 -30,-67.5 -22.5,-75 -22.5,-75 -30))"
 ]
}

 The dataset includes 3346 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046651-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cctxh06
title: CCDC 772148: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctxh17
title: CCDC 772149: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctxh28
title: CCDC 772150: Experimental Crystal Structure Determination

description: Related Article: P.Maji, L.Mahalakshmi, S.S.Krishnamurthy, M.Nethaji|2011|J.Organomet.Chem.|696|3169|doi:10.1016/j.jorganchem.2011.06.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvh4zf
title: CCDC 789135: Experimental Crystal Structure Determination

description: Related Article: Mei-Lan Sun, Ban-Feng Ruan, Qiong Zhang, Zhao-Di Liu, Sheng-Li Li, Jie-Ying Wu, Bao-Kang Jin, Jia-Xiang Yang, Sheng-Yi Zhang, Yu-Peng Tian|2011|J.Organomet.Chem.|696|3180|doi:10.1016/j.jorganchem.2011.06.045
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvh50h
title: CCDC 789136: Experimental Crystal Structure Determination

description: Related Article: Mei-Lan Sun, Ban-Feng Ruan, Qiong Zhang, Zhao-Di Liu, Sheng-Li Li, Jie-Ying Wu, Bao-Kang Jin, Jia-Xiang Yang, Sheng-Yi Zhang, Yu-Peng Tian|2011|J.Organomet.Chem.|696|3180|doi:10.1016/j.jorganchem.2011.06.045
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.