cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/icpsr37237.v2
title: Midlife in the United States: Core Sample Mortality Data, 2016
title: Version 2

description: In 1995-1996, the MacArthur Midlife Research Network carried out a national survey of over 7,000 Americans aged 25 to 74 [ICPSR 2760]. The purpose of the study was to investigate the role of behavioral, psychological, and social factors in understanding age-related differences in physical and mental health. With support from the National Institute on Aging, an initial follow-up of the original Midlife Development in the United States (MIDUS) samples was conducted in 2004 (MIDUS 2). The daily stress and cognitive functioning projects were repeated at MIDUS 2; in addition the protocol was expanded to include biomarkers and neuroscience. In 2005, a baseline sample of 592 African Americans from Milwaukee was added to MIDUS to examine health issues in minority populations. In 2013 a third wave (MIDUS 3) of survey data was collected on longitudinal participants. Data collection for this follow-up wave largely repeated baseline assessments (e.g., phone interview and extensive self-administered questionnaire), with additional questions in selected areas (e.g., economic recession experiences, optimism and coping, stressful life events, and caregiving). A third wave of cognitive functioning data and a second wave of the Milwaukee sample were also collected. Data collection for the daily diary, biomarkers, and neuroscience is ongoing. This dataset includes all known MIDUS decedents (N=1,511) from the Core National and Milwaukee samples as of December 2016.
description: The primary purpose of this study was to obtain information about the underlying cause of death for Midlife in the United States (MIDUS) and Milwaukee decedents.
description: The data set contains 10 variables and 1,511 cases. The variables include decedent status, source of decedent information, month and year of death, and International Classification of Diseases (ICD) codes. The demographic variable, gender, is also included.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Checked for undocumented or out-of-range codes..
description: Datasets: DS1: Dataset
description: Midlife in the United States (MIDUS) Series
description: record abstracts
description: All decedent participants of the MIDUS series. Smallest Geographic Unit: None
description: 1511 prior participants in the MIDUS series with a confirmed decedent status.
DOI: 10.5281/zenodo.12742425
title: Strategies to control humidity sensitivity of azobenzene isomerisation kinetics in polymer thin films

description: This is the full dataset for the manuscript "Strategies to control humidity sensitivity of azobenzene isomerisation kinetics in polymer thin films", submitted to the journal "Communications Materials".

All the results presented in the manuscript is based on the data included in this dataset. All the raw data and analysed data is included, excluding final figures in the manuscript, which were composed from the data within.

The data includes multiple experiments with different methods and materials. The data is sorted from the top down all the way down to single experiments. The dataset includes "README.txt" files that provide additional information relevant at each level, for example for raw data they provide information on the experimental settings and for analysed data the provide analysis methods used.
DOI: 10.5281/zenodo.13331220
title: MiniMPL data for 'Supercooled liquid water cloud classification using lidar backscatter peak properties'

description: This depository contains MiniMPL data collected in Christchurch, New Zealand from May 2021 to December 2022 for 'Supercooled liquid water cloud classification using lidar backscatter peak properties' by Whitehead et al. (2024). The dataset contains:



 MiniMPL data processed with the Automatic Lidar and Ceilometer Framework (ALCF; Kuma et al., 2021)

Reference cloud phase mask

G22-Christchurch model-generated cloud phase mask

Figures comparing the G22-Davis and G22-Christchurch masks to the reference mask
DOI: 10.5281/zenodo.7764284
title: New England Protected Open Space

description: The New England Protected Open Space dataset maintained by Harvard Forest is a compilation of existing open space datasets in the New England region including The Nature Conservancy's Secured Areas, National Conservation Easement Database, Protected Areas Database of the U.S., and data provided by states and land trusts. See metadata for each version for version-specific information and information about fields. Version 1.2 was developed between May 2021 and March 2022, and was published in March 2023. Version 1.2 has new data from multiple sources added circa May 2021, more complete attribute information, and tribal lands removed. See metadata for more details. File geodatabase and shapefile versions are provided - refer to metadata for full field names if using shapefile version, as names will be truncated. <strong>Important note about versions of NE POS: </strong>NE POS is a dataset we maintain for research purposes, and research projects can take varying lengths of time. Versions of NE POS may be uploaded to Zenodo "out of order," meaning older versions of data may be uploaded after more recent versions have been published. Use the version number to identify the recency of the data rather than the date of upload.
DOI: 10.5285/5e48b31e413b480792e4156191b654f4
title: FAMOUS-Glimmer simulations with interactive North American and Greenland ice sheets (21ka and 140ka)

description: This dataset contains model inputs and outputs from ensembles of simulations and sensitivity tests performed by FAMOUS-Glimmer of the Last Glacial Maximum (LGM; 21 kilo annum before present (ka BP)) and the Penultimate Glacial Maximum (PGM; 140 ka BP), as used in the publication Patterson et al., 2024 (https://doi.org/10.5194/cp-2024-10). These data were used to help understand the difference between the North American Ice Sheet at the last two glacial maxima, explore the sensitivity of the ice sheet to uncertain model parameters and understand the role of orbit, greenhouse gases and initial conditions on the final ice sheet configurations. The output of 62 ensemble members varying climate and ice sheet model parameters for each of the LGM and PGM are included as well as the results of 8 sensitivity tests using one set of parameters but varying the initial ice sheets and climates. These simulations were created using the atmospheric general circulation model FAMOUS coupled to the Glimmer ice sheet model under LGM and PGM climate boundary conditions, including greenhouse gas concentrations and orbital parameters outlined in the PMIP4 protocols (Kageyama et al., 2017 and Menviel et al., 2019).

The model inputs include ancillary files of the prescribed sea surface temperature and sea ice fields and climate model boundary conditions, netCDF files of the ice sheet model initial condition as well as the model configuration file and updated model modifications. The outputs consist of netCDF files of monthly climate model variables from ‘Not Ruled Out Yet’ ensemble simulations, ice sheet model output from the final timestep of all ensemble simulations (including ice sheet thickness, topography, surface mass balance and velocity) and final ice sheet thickness from the sensitivity tests. Also included are excel spreadsheets of the time series of total ice volumes for all ensemble members and the list of parameter combinations used for each. The climate model data has global coverage on a 7.5x5 degree lat/lon grid. The ice sheet model data covers North America and Greenland on a Lambert Azimuthal Equal Area projection at 40x40km resolution. Each simulation was run for ~1000 climate model years, with the ice sheet model running at 10x acceleration, giving ~10,000 years of ice sheet model output.
DOI: 10.5517/cc4jj5b
title: CCDC 135041: Experimental Crystal Structure Determination

description: Related Article: M.M.El-Abadelah, S.S.Sabri, M.A.Khanfar, W.Voelter, C.Maichle-Moessmer|1999|Z.Naturforsch.,B:Chem.Sci.|54|1323|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cczt777
title: CCDC 917979: Experimental Crystal Structure Determination

description: Related Article: Bao-Li Fei|2016|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.14818809
title: SWAT datafile

description: Datafile for the SWAT study. Includes sheets for:- Full dataset for all randomised participants- Eligible responders- All responders- Non responders
DOI: 10.6084/m9.figshare.25479145
title: Supplementary Material for: Drug Target Mendelian Randomization Study of PCSK9 and HMG-CoA Reductase Inhibition and Atrial Fibrillation

description: Introduction: Atrial fibrillation (AF) is a prevalent cardiac arrhythmia with significant clinical implications. The potential influence of lipid-lowering therapies, specifically PCSK9 inhibitors (PCSK9i) and HMG-CoA reductase inhibitors (statins), on AF risk remains a topic of interest. This Mendelian Randomization (MR) study aimed to elucidate the causal relationship between genetically predicted inhibition of PCSK9 and HMG-CoA reductase and the risk of AF.
Methods: Utilizing publicly available, summary-level genome-wide association study (GWAS) data, we employed single-nucleotide polymorphisms (SNPs) associated with lower LDL-C levels as instruments for gene-simulated inhibition of PCSK9 and HMG-CoA reductase. Multiple MR techniques were applied to estimate the causal effects, and sensitivity analyses were conducted to validate the results.
Results: Genetically predicted inhibition of PCSK9 demonstrated a reduced risk of AF, with an odds ratio (OR) of 0.92 (95% CI: 0.85 to 0.99, p=0.01) using the inverse variance weighted (IVW) method. In contrast, the inhibition of HMG-CoA reductase did not exhibit a statistically significant association with AF risk (IVW: OR = 1.11, 95% CI: 1.00-1.22, p = 0.05). 
Conclusion: Our MR study suggests that genetically predicted inhibition of PCSK9, but not HMG-CoA reductase, is associated with a lower risk of AF. These findings provide evidence for a causal protective effect of PCSK9i on AF and support the use of PCSK9i for AF prevention in patients with dyslipidemia. Further studies are needed to elucidate the mechanisms underlying the differential effects of PCSK9i and statins on AF and to confirm the clinical implications of our findings.
DOI: 10.6084/m9.figshare.25817611
title: Supplementary Material for: Basophil activation test (BAT) is inferior to provocation test in diagnosing aspirin hypersensitivity

description: Introduction
 Diagnostic of aspirin (ASA) hypersensitivity is largely based on provocation tests. However they have significant limitations including influence of medications, necessity of hospitalization and safety issues. Basophil activation test (BAT) seems to be a promising in vitro alternative. It has already proven to be a useful tool for diagnosing IgE-mediated allergy to certain food and airborne allergens as well as insects venoms. 
 The aim of the study was to assess performance of BAT in diagnosing aspirin hypersensitivity in comparison with current golden standard (oral provocation test; OPT).
 Methods
 The study group comprised 148 adult patients with suspicion of aspirin hypersensitivity, including 51 (36%) with chronic urticaria, 73 (51%) with asthma and 55 (39%) with chronic sinusitis. The control group were 10 healthy adult patients who used NSAIDs during preceding year with good tolerance. 
 BAT with ASA was conducted in all the participants. Additionally, in the study group OPT was performed with cumulative dose of 1000 mg of ASA. 
 Results
 Out of 148 study group participants, 114 underwent BAT and ASA provocation with conclusive results acquired in both tests. In this group the threshold for positive BAT was 4.9%. Sensitivity and specificity of BAT were found to be 55.9% and 75% respectively, with positive predictive value of 77% and negative predictive value of 54%. The highest sensitivity (78%) was found in subgroup patients with chronic urticaria while specificity was highest in the subgroup with chronic respiratory diseases (87%).
 Conclusion
 Despite significant advantages of BAT such as safety, no influence of drugs and objectivity, its performance makes it inferior to current standard in ASA hypersensitivity.
DOI: 10.6084/m9.figshare.26001373
title: Supplementary Material for: The Association Between Retinal Thickness Fluctuations and Visual Outcomes Under Anti-VEGF Therapy: A Systematic Review and Meta-Analysis

description: Introduction: To examine the association between retinal thickness (RT) fluctuations and best-corrected visual acuity (BCVA) in eyes with neovascular AMD, macular edema secondary to RVO, and DME treated with anti-VEGF therapy.


Methods: A systematic search of Ovid MEDLINE, EMBASE, and the Cochrane Library was performed from January 2006 to March 2024. Studies comparing visual or anatomic outcomes of patients treated with anti-VEGF therapy, stratified by magnitudes of RT fluctuation, were included. ROBINS-I and Cochrane RoB 2 tools were used to assess risk of bias, and certainty of evidence was evaluated with GRADE criteria. Meta-analysis was performed with a random effects model. Primary outcomes were final BCVA and change in BCVA relative to baseline.

Results: 15725 articles were screened; 15 studies were identified in the systematic review and 5 studies were included in the meta-analysis. Final ETDRS VA was significantly worse in eyes with the highest level of RT fluctuation (weighted mean difference (WMD) = 7.86 letters; 95% CI, 4.97, 10.74; p &lt; 0.00001; I² = 81%; 3136 eyes). RT at last observation was significantly greater in eyes with high RT fluctuations (WMD = –27.35 μm; 95% CI, –0.04, 54.75; p = 0.05; I2 = 88%; 962 eyes). 

Conclusions: Final visual outcome is associated with magnitude of RT fluctuation over the course of therapy. It is unclear whether minimizing RT fluctuations would help to optimize visual outcomes in patients treated with anti-VEGF therapy. These findings are limited by a small set of studies, risk of bias, and considerable heterogeneity.
DOI: 10.6084/m9.figshare.26118109
title: <b>Summary statistics for </b><b>Nature Genetics manuscript "</b><b>Heterogeneous genetic architectures of prostate cancer susceptibility in Sub-Saharan Africa"</b>

description: Men of African descent have the highest prostate cancer incidence and mortality rates, yet the genetic basis of prostate cancer in African men has been understudied. We used genomic data from 3,963 cases and 3,509 controls from Ghana, Nigeria, Senegal, South Africa, and Uganda, to infer ancestry-specific genetic architectures and fine-map disease associations. Fifteen independent associations at 8q24.21, 6q22.1, and 11q13.3 reached genome-wide significance, including four novel associations. Intriguingly, multiple lead associations are private alleles, a pattern arising from recent mutations and the out-of-Africa bottleneck. These African-specific alleles contribute to haplotypes with odds ratios above 2.4. We found that the genetic architecture of prostate cancer differs across Africa, with effect size differences contributing more to this heterogeneity than allele frequency differences. Population genetic analyses reveal that African prostate cancer associations are largely governed by neutral evolution. Collectively, our findings emphasize the utility of conducting genetic studies that use diverse populations.
DOI: 10.6084/m9.figshare.26792731
title: Analyses in "The Biogeography of the Amazonian Tree Flora"

description: Analyses for the tree species turnover in Amazonia. It begins with the ordination of the plot-level community matrix (2,023 forest inventory plots (1 ha) that provide abundant data for 5,188 tree species) and the model for the influence of environmental and spatial gradients. It follows with the ordination of the gridded community matrix (47,441 0.1-degree grid cells that provide relative abundance data for 5,188 tree species). The resulting ordination of the gridded community matrix is mapped over Amazonia to detect zones of sharp tree species compositional turnover. Graphs for the species niche proprieties for selected environmental gradients are drawn to depict species positioning and compositional turnover along those gradients.
DOI: 10.6084/m9.figshare.27141357
title: Supplementary Material for: Clinical value of impulse oscillometry in chronic obstructive pulmonary disease: a systematic review and meta-analysis

description: Introduction: Impulse oscillometry (IOS) is an effortless test compared to spirometry. Numerous studies explored the role of IOS in spirometry-based chronic obstructive pulmonary disease (COPD), but most of them had limited sample sizes with poor statistical power. This systematic review and meta-analysis aimed to pool the individual data and quantitatively analyze the clinical value of IOS in COPD. 
Methods: PubMed, Web of Science, Ovid, Cochrane Library, China National Knowledge Internet and Wanfang were searched for studies with comparisons of IOS indicators between COPD patients and healthy controls, including respiratory resistance at 5Hz (R5) and 20Hz (R20), difference between R5 and R20 (R5-R20), respiratory reactance at 5 Hz (X5), resonant frequency (Fres), and area of reactance (Ax). Meta-analyses were conducted to calculate the weighted mean differences (WMDs) and 95% confidence intervals (CIs). 
Results: 39 eligible studies were enrolled, involving 6144 COPD patients and 4611 healthy controls. Relative to healthy controls, COPD patients had significantly higher R5 (WMD: 0.17, 95% CI: 0.14, 0.20), R5-R20 (WMD: 0.13, 95% CI: 0.11, 0.15), Fres (WMD: 9.04, 95% CI: 7.66, 10.42), Ax (WMD: 1.24, 95% CI: 0.86, 1.61) and lower X5 (WMD: -0.15, 95% CI: -0.18, -0.11), and such differences became even greater as the Global Initiative for Chronic Obstructive Lung Disease (GOLD) stage escalated. Pooled correlation coefficients presented that R5, R5-R20, Fres and X5 were significantly related to post-bronchodilator forced expiratory volume in the first second (FEV1)/forced vital capacity (FVC) ratio (meta r = -0.37, -0.45, -0.53 and 0.42 respectively) and FEV1 as a percentage of predicted value (FEV1% pred) (meta r = -0.43, -0.54, -0.59 and 0.56 respectively). 
Conclusion: IOS may be a supplement to spirometry in diagnosing and assessing COPD, especially when spirometry is inappropriate. More well-designed, large sample sized, prospective studies are warranted to establish an IOS-based criterion for COPD management.
DOI: 10.6084/m9.figshare.27143937
title: Supplementary Material for: Suspected Postpartum Depression Revealed to be CSF1R-Related Leukoencephalopathy: A Case Report

description: Introduction 
This is a case of a 32-year-old woman who developed postpartum depression (PPD). She became anxious and depressive about caring for her child, and the Edinburgh Postnatal Depression Scale (EPDS) test showed a score of 9 at two weeks after delivery, and at 7 months postpartum, she presented with major melancholic depression followed by mild cognitive decline without any neurological symptoms except cluttering speech. 
Case Presentation 
Cerebral MRI showed confluent FLAIR hyperintensities in the periventricular and frontal deep white matter, with multiple spotty calcifications in the frontal white matter by cerebral CT. Genetic testing revealed a mutation in the colony stimulating factor 1 receptor (CSF1R). 
Conclusion
This case report is consistent with evidence that PPD may have organic causes in some cases, including CSF1R mutations. Atypical findings such as mild cognitive decline combined with PPD in psychiatric interview may justify brain imaging to avoid misdiagnosis, since CSF1R-related leukoencephalopathy is probably an under-recognized disease in medical psychiatry. Further investigations are needed to clarify a pathophysiological correlation between CSF1R signaling abnormality and PPD as well as major depression.
DOI: 10.6084/m9.figshare.6741734
title: LSIE individual subjects full set

description: Individual subject folders for 49 subjects containing all raw data. Cortisol data for all subjects are combined in single Excel spreadsheet. UM_LSIE.xml is a study description document.
DOI: 10.6084/m9.figshare.9994706
title: Benchmark analysis of coiled-coil prediction tools

description: This repository contains the raw data for the publication "Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data". The tar file contains all the millions of files, sorted by the first letters of the PDB ids, containing the PDBs, sequences, and predictions. The database dump contains the database.<br>
DOI: 10.12770/c502ed30-0d7d-11de-a4b1-000086f6a603
title: Cartes des gisements de coquilles comestibles des côtes de France

description: Ces cartes sur la répartition géographique des mollusques comestibles des côtes de France ont été réalisées par L. Joubin et J. Guérin-Ganivet entre 1904 et 1913.
DOI: 10.15472/3ssdhc
title: Producción de frutos y semillas de Cucurbita ficifolia Bouché y Rubus bogotensis Kunth en un área bajo restauración ecológica en Bogotá D.C.

description: La información fue generada en la investigación "Evaluación de aspectos ecológicos y análisis del riesgo de invasión de Cucurbita ficifolia Bouché y Rubus bogotensis Kunth en un área en proceso de restauración ecológica en Bogotá D.C.” que está enmarcada en el contrato de prestación de servicios número 037-2021, cuyo objeto contractual es Prestar los servicios profesionales para realizar actividades con énfasis en aspectos ecológicos de las especies invasoras y/o colonizadoras agresivas priorizadas por la línea de restauración ecológica, en el Distrito Capital y la región.
description: Se evalúa el potencial de producción de frutos y semillas de C. ficifolia y R. bogotensis como un rasgo ecológico importante para el análisis de riesgo de invasión. Se incluyeron datos de viabilidad de semillas.
description: Este recurso cuenta con 202 registros de Cucurbita ficifolia y Rubus bogotensis con información asociada de la producción de frutos y semillas y fue desarrollado durante julio y septiembre del 2021 por medio de la colecta de frutos maduros y extracción de semillas en parcelas y puntos en Hacienda Las Mercedes, Bogotá, D.C.
DOI: 10.17038/cse/1822363
title: Active Thermochemical Tables (ATcT) Thermochemical Values ver. 1.122r
DOI: 10.17909/79st-3m66
title: Data from "An Earth-sized Planet around an M5 Dwarf Star at 22 pc"

description: Light curves of EPIC 211414619 obtained by K2 and TESS. Those data were taken at long (≈ 29 minutes) and short (2 minutes) cadences for K2 and TESS light curves, respectively.
DOI: 10.18462/iir.icr.2019.0163
title: Combination of vacuum insulation panels and phase change materials in temperature-controlled containers.