cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/5ebc2da3bd022
title: Parkes observations for project P737 semester 2020APRS_01

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.15468/ur2hfw
title: Genetic and morphological evidence for cryptic species in Macrobrachium australe and resurrection of M. ustulatum (Crustacea, Palaemonidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Castelin, Magalie, Mazancourt, Valentin de, Marquet, Gérard, Zimmerman, Gabrielle, Keith, Philippe (2017): Genetic and morphological evidence for cryptic species in Macrobrachium australe and resurrection of M. ustulatum (Crustacea, Palaemonidae). European Journal of Taxonomy 289: 1-27, DOI: https://doi.org/10.5852/ejt.2017.289
DOI: 10.5285/a4e3628d-10e9-44c6-e053-6c86abc0df88
title: Suspended particulate matter and organic carbon in samples collected during Changing Arctic Ocean cruises JR17007 and JR18006 in the Barents Sea

description: Samples for suspended particulate matter (SPM) and organic carbon contents analyses were collected during a series of ship-board sampling campaigns in the Barents Sea, along a North-South transect at 30 degrees Longitude in July 2018 (cruise JR17007) and July 2019 (cruise JR18006) as part of the Changing Arctic Ocean programme. SPM was sampled from airline tubing connected to access ports in the core mini flume (see Thompson et al. 2013), located in the middle of the flow channel (~10 cm above sediment surface), one minute before the end of each flow velocity step, using a 50 ml Swinnex syringe filter system with pre-ashed (450 degrees C for 24 hours) pre-weighed 25 mm Glass Fibre Filters (Whatmann). Sample processing was undertaken at a later date, using step-wise drying (24 hours at 60 degrees C) and ashing (24 hours at 450 degrees C) of the samples to determine organic carbon contents.
DOI: 10.17632/g47w9skdp2.1
title: Control of upstream conditions on geomorphometric characteristics of bar fingers within bird-foot deltas
DOI: 10.17632/k7xhhwr5fd.2
title: Data for: Opportunities and limitations for existing CHP plants to integrate polygeneration of drop-in biofuels with onsite hydrogen production

description: This is a data repository for the article: Opportunities and limitations for existing CHP plants to integrate polygeneration of drop-in biofuels with onsite hydrogen production
DOI: 10.17632/ynpz8gj25z.1
title: Mesoscope data-1

description: Original mesoscope data for EPC mimic injected mouse
DOI: 10.15468/eeu9et
title: New species of Rhizomyces (Ascomycota, Laboulbeniales) parasitic on African stalk-eyed flies (Diptera, Diopsidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rossi, Walter, Feijen, Hans R. (2018): New species of Rhizomyces (Ascomycota, Laboulbeniales) parasitic on African stalk-eyed flies (Diptera, Diopsidae). European Journal of Taxonomy 474: 1-13, DOI: https://doi.org/10.5852/ejt.2018.474
DOI: 10.5281/zenodo.3820656
title: Reddit Entity Linking

description: An entity linking dataset created from the social media website, Reddit. The dataset contains 619 posts and 1,243 corresponding comments that were selected and given to human annotators. Three different human annotators were used to annotate each grouping of text. The resulting mentions and entities are included with a breakdown of the inter-annotator agreement between the various mention-entity pairs. The mention-entity pairs collected are broken into groups based on the level of inter-annotator agreement. Gold annotations - all three agree Silver annotations - two out of three annotators agree Bronze annotations - an individual annotator's annotation that the other two did not have In total the dataset contains 1,343 gold annotations, 2,725 silver annotations, and 7,036 bronze annotations. A readme file is provided that describes the structure of the files and the information within each one.
DOI: 10.5281/zenodo.3783734
title: Data for Halpin et al, 'Pattern contrast influences wariness in naïve predators towards aposematic patterns'

description: The experimental data for the paper 'Pattern contrast influences wariness in naïve predators towards aposematic patterns' by Halpin et al (2020), published in Scientific Reports. The file contains the behaviour of domestic chicks (<em>Gallus gallus domesticus</em>) towards prey that varied in their visual pattern, and specifically whether or not chicks attacked or ate prey (0=not attacked/eaten, 1=attacked/eaten) in each of the five experimental trials.
DOI: 10.5281/zenodo.3783735
title: Data for Halpin et al, 'Pattern contrast influences wariness in naïve predators towards aposematic patterns'

description: The experimental data for the paper 'Pattern contrast influences wariness in naïve predators towards aposematic patterns' by Halpin et al (2020), published in Scientific Reports. The file contains the behaviour of domestic chicks (<em>Gallus gallus domesticus</em>) towards prey that varied in their visual pattern, and specifically whether or not chicks attacked or ate prey (0=not attacked/eaten, 1=attacked/eaten) in each of the five experimental trials.
DOI: 10.5281/zenodo.3825901
title: Table 1 : Norms for clinical use of CXM, a real-time marker of height velocity

description: Table 1 data set
DOI: 10.15468/c57epx
title: Incriminacion De Vectores De Leishmaniasis En La Costa Caribe

description: Este recurso hace parte del proyecto "Incriminación de vectores de leismaniasis en la Costa Caribe", todos los ejemplares relacionados en este documento pertenecen a especies de dípteros del genero Lutzomyia recolectados en dos municipios del departamento de Sucre, Sampués y Colosó.
DOI: 10.15468/pwd4du
title: A review of the South American genera of Cimbicidae (Insecta, Hymenoptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vilhelmsen, Lars, Smith, David R., Malagón-Aldana, Leonardo A. (2018): A review of the South American genera of Cimbicidae (Insecta, Hymenoptera). European Journal of Taxonomy 482: 1-36, DOI: https://doi.org/10.5852/ejt.2018.482
DOI: 10.17632/9wvhtjk7t7.1
title: Mirror symmetric broadband homodecoupled perfect echo

description: Pulse sequences in Bruker format for achieving broadband homodecoupling in w1 is described. The technique is implemented in a conventional 2D TOCSY experiment. A real and constant time mode version of the mirror symmetric decoupling approach is provided.
DOI: 10.25387/g3.12124485.v2
title: Supplemental Material for Dubin, Roop, and Brem, 2020

description: A. Each row reports the value for one gene of <i>D<sub>XY</sub></i>, a metric of sequence divergence,<i> </i>between the <i>S. cerevisiae </i>population in the column header and the European <i>S. paradoxus </i>population. ‘NaN’ indicates an undefined <i>D<sub>XY</sub></i> value.B. Each row reports the value for one gene of <i>D<sub>XY</sub></i>, a metric of sequence divergence,<i> </i>between the <i>S. cerevisiae </i>European vineyard population and the North American <i>S. paradoxus </i>subpopulation in the column header. ‘NaN’ indicates an undefined <i>D<sub>XY</sub></i> value.<br>Table S1 contains D<sub>XY</sub> values between <i>S. cerevisiae </i>and <i>S. paradoxus </i>populations.<br>Table S2 contains D<sub>XY</sub> significance values measured between the indicated <i>S. paradoxus</i> subpopulation and European vineyard <i>S. cerevisiae</i>.<br>Table S3 contains data sources used in this study.<br>Figure S1 depicts phylogenetic analyses of peroxisomal membrane genes.<br>Figure S2 depicts expression divergence across <i>Saccharomyces</i> sensu stricto in peroxisome membrane genes.
DOI: 10.3886/e109629v3
title: Survey of Social Media Data Management Practices

description: These data are the results of a survey of researchers who use social media data in their research. We recruited respondents through email lists (e.g., AIR-L the listserv for the Association of Internet Researchers), Facebook groups (e.g., Researchers of the Socio-Technical), and investigators’ individual social media accounts. The survey was open from July 31, 2018 to August 21, 2018 and received 73 responses. We offered three $100 Amazon gift certificates as incentives and used random number draws to select recipients. We used Qualtrics to manage our survey and collection of responses. Our survey instrument had five main sections: general and demographic, data acquisition, data transformation, analysis and visualization, and data sharing and reuse. We restricted our demographic data collection to an investigator’s affiliation (e.g., university, government lab) and position (e.g., PhD student, faculty, staff) in order to focus on the researchers’ practices rather than their individual characteristics.<br>
DOI: 10.15468/t5ct6p
title: Carnivorous sponges from the Australian Bathyal and Abyssal zones collected during the RV Investigator 2017 Expedition

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ekins, Merrick, Erpenbeck, Dirk, Hooper, John N. A. (2020): Carnivorous sponges from the Australian Bathyal and Abyssal zones collected during the RV Investigator 2017 Expedition. Zootaxa 4774 (1): 1-159, DOI: https://doi.org/10.11646/zootaxa.4774.1.1
DOI: 10.17632/f2b3bkdgm3.1
title: The Impact of Financial Deprivation State on Prosocial Behaviour: Comparing the Roles of Face-Saving Consciousness versus Status/Success-Gaining Intention

description: Study 1 provides evidence for the positive association between financial deprivation and prosocial behaviour using Mann-Whitney U analysis (H1). This study also tests the mediation role of status-gaining intention (H2a) in the observed effect following the three-step method. The indicator of status-gaining intention is need for status. Findings rejected H2a. In Study 2, we aimed to test whether the increase in prosocial behaviour among financially deprived (versus privileged) individuals can be carried over by their need for success (H2a) or their consciousness of Face-saving (H2b). Willingness to help and total number of clicks were two dependent variables showing one's prosocial tendency. Additionally, the mediation of emotion was also tested. Including trait anxiety about money and month-spending as covariates and using the bootstrapping technique (Hayes, 2013; Model4) with 5000 bootstrapped samples, results provided robust support for the prediction that financial deprivation promoted prosocial behavior (H1) and provided evidence for our theoretical account that the relationship between financial deprivation and prosocial behavior was explained by individuals’ Face-saving consciousness. Findings also revealed that emotion cannot explain the overall effects of financial deprivation on prosocial behaviour. In addition, we also measured another possible mediator (e.g., self-improvement motivation) in this study, and results rejected the possibility. In Study 3, we aimed to introduce a social contextual factor (public versus private) and address an important question that whether financial deprivation can more likely lead to an individual’s prosocial behavior in public (versus private) context (H3). Total number of clicks was the dependent variable. A 2(financial state: deprivation versus privilege) × 2 (context: public versus private) ANCOVA revealed thata significant interaction between financial state and context. In a public context, participants financially deprived clicked more than their financially privileged counterparts. However, in a private context, participants financially deprived did not differ from those in privilege condition in total number of clicks. The results supported the H3.
DOI: 10.17632/k2545gv8s9.2
title: Auditory sequence perception in common marmosets (Callithrix jacchus) Behav Processes. 2019 May;162:55-63. doi: 10.1016/j.beproc.2019.01.014.

description: Raw data for the article: Auditory sequence perception in common marmosets (Callithrix jacchus) Two marmosets (Cj190 and Cj195) were trained to discriminate auditory patterns to test whether they are sensitive to the regularity of auditory patterns. For this purpose, three experiments were conducted using simple Morse-code like patterns. In Experiment 1, stimuli were consisted of the combination of two properties (i.e., frequency and inter-tone interval). Both marmosets could choose S+ out of four sound trains as indicated by the increment of HIT responses (‘1’ in the S+ trials) and decrement of FA response (‘1’ in the S- trials). Thus, the marmosets’ ability to recognize physical properties of sounds was showed. In Experiment 2, stimulus patterns were ABAB and AABB patterns. However, the marmosets could not discriminate these patterns although the results of Experiment 1 showed that the marmosets can notice the difference between A and B elements. Such results were indicated by the comparable HIT and FA ratios across sessions. Thus, the results of Experiment 2 implied that marmosets are not sensitive to the ordering regularity of sounds. In the phase 1 of Experiment 3, ABAB and AABB patterns in which either frequency or tone duration properties were shared were presented. Consequently, the marmoset learned to avoid two S- stimuli that did not share the common physical properties with S+ as indicated by the marked decrement of FA ratios to two of three S- stimuli. However, their discrimination performance did not rely on the ordering features. In the phase 2 of Experiment 3, training was continued using S+ and S- that the marmosets could not inhibit responding. Notably, FA to such S- was not inhibited. Consequently, they could not discriminate ABAB and AABB patterns. In conclusion, the current experiments imply that the marmosets can recognize physical features of sound. However, they cannot process the order information of auditory signals.
DOI: 10.5281/zenodo.3825508
title: TOP-100 DOCKING POSES OF FDA APPROVED DRUGS AND DRUGS IN CLINICAL INVESTIGATION AT SARS-CoV2 MAIN PROTEASE

description: 7922 compounds were downloaded from NPC database (https://tripod.nih.gov/npc/). In order<br> to eliminate the non-specific binders, some criteria including molecular weight, between 100 to<br> 1000 g/mol; number of rotatable bonds, &lt;100; number of atoms, between 10 and 100; number<br> of aliphatic and aromatic rings, &lt;10; number of hydrogen-bond acceptor and donors, &lt;10 were<br> set and as a result the total number of compounds was decreased to 6654. These ligands were<br> prepared using LigPrep module of Maestro at neutral pH (LigPrep, Schrodinger v.2017). In<br> molecular docking, we used following protein structure: SARS-CoV2 Main Protease, (PDB, 6LU7). The protein<br> was prepared using Protein Preparation module of Maestro. PROPKA was used for<br> determination of protonation states of amino acid residues. Restrained minimization was<br> performed with OPLS3 force field for the protein using 0.3 Å heavy atom convergence.<br> Docking was performed with Glide/SP using default settings. Top-100 docking poses were provided.
description: For more information: durdagilab.com, E-mail: serdar.durdagi@med.bau.edu.tr
DOI: 10.5281/zenodo.3825509
title: TOP-100 DOCKING POSES OF FDA APPROVED DRUGS AND DRUGS IN CLINICAL INVESTIGATION AT SARS-CoV2 MAIN PROTEASE

description: 7922 compounds were downloaded from NPC database (https://tripod.nih.gov/npc/). In order<br> to eliminate the non-specific binders, some criteria including molecular weight, between 100 to<br> 1000 g/mol; number of rotatable bonds, &lt;100; number of atoms, between 10 and 100; number<br> of aliphatic and aromatic rings, &lt;10; number of hydrogen-bond acceptor and donors, &lt;10 were<br> set and as a result the total number of compounds was decreased to 6654. These ligands were<br> prepared using LigPrep module of Maestro at neutral pH (LigPrep, Schrodinger v.2017). In<br> molecular docking, we used following protein structure: SARS-CoV2 Main Protease, (PDB, 6LU7). The protein<br> was prepared using Protein Preparation module of Maestro. PROPKA was used for<br> determination of protonation states of amino acid residues. Restrained minimization was<br> performed with OPLS3 force field for the protein using 0.3 Å heavy atom convergence.<br> Docking was performed with Glide/SP using default settings. Top-100 docking poses were provided.
description: For more information: durdagilab.com, E-mail: serdar.durdagi@med.bau.edu.tr
DOI: 10.7910/dvn/plqso9/ienece
title: Mapeamento de Setores Econômicos Estratégicos para Campo Mourão - DASHBOARD.tab

description: :unav
DOI: 10.17632/64zw5sgg2h.5
title: COVID19MXdataset

description: The Ministry of Health is the dependency of the Mexico's Executive Power that is primarily in charge of the prevention of diseases and the promotion of the health of the population. It collects information from the Epidemiological Surveillance System for Viral Respiratory Diseases, which reports the 475 viral respiratory disease monitoring units, denominated USMER (by its initials in Spanish) which includes health entities throughout the country. The information contained corresponds only to the data obtained from the epidemiological study of a suspected case of viral respiratory disease at the time it is identified in the medical units of the Health-Sector (USMER). According to the clinical diagnosis of admission, it is considered as an outpatient or hospitalized patient. The database does not include the evolution during the stay in the medical-units, with the exception of updates to when the patient is discharged of the hospital and when epidemiological surveillance units or health jurisdictions determines the case of death patients.
DOI: 10.17632/64zw5sgg2h.6
title: COVID19MXdataset

description: The Ministry of Health is the dependency of the Mexico's Executive Power that is primarily in charge of the prevention of diseases and the promotion of the health of the population. It collects information from the Epidemiological Surveillance System for Viral Respiratory Diseases, which reports the 475 viral respiratory disease monitoring units, denominated USMER (by its initials in Spanish) which includes health entities throughout the country. The information contained corresponds only to the data obtained from the epidemiological study of a suspected case of viral respiratory disease at the time it is identified in the medical units of the Health-Sector (USMER). According to the clinical diagnosis of admission, it is considered as an outpatient or hospitalized patient. The database does not include the evolution during the stay in the medical-units, with the exception of updates to when the patient is discharged of the hospital and when epidemiological surveillance units or health jurisdictions determines the case of death patients.
DOI: 10.17632/64zw5sgg2h.7
title: COVID19MXdataset

description: The Ministry of Health is the dependency of the Mexico's Executive Power that is primarily in charge of the prevention of diseases and the promotion of the health of the population. It collects information from the Epidemiological Surveillance System for Viral Respiratory Diseases, which reports the 475 viral respiratory disease monitoring units, denominated USMER (by its initials in Spanish) which includes health entities throughout the country. The information contained corresponds only to the data obtained from the epidemiological study of a suspected case of viral respiratory disease at the time it is identified in the medical units of the Health-Sector (USMER). According to the clinical diagnosis of admission, it is considered as an outpatient or hospitalized patient. The database does not include the evolution during the stay in the medical-units, with the exception of updates to when the patient is discharged of the hospital and when epidemiological surveillance units or health jurisdictions determines the case of death patients.
DOI: 10.17632/x5mt2pt8b6.1
title: Can Enhancing Capabilities Promote Energy Justice? An Agent-Based Model Approach

description: The Capabilities Approach has been recently invoked in efforts to study questions relating to energy and justice, enabling a better understanding of the relationship between energy and well-being or deprivation. This framework allows for a flexible analysis of human needs in their local context and suggests a variety of possible interventions, beyond merely increasing energy consumption. At the same time, research in other areas such as decarbonization as well as environmental justice has derived important insights from agent-based models (ABMs). ABMs are especially useful in studying complex phenomena as they allow for a bottom-up interactions of heterogeneous agents with simple behavior rules, and give rise to emergent properties at the system level which are not reducible to any individual agent’s action or intent. This approach is thus very suitable for studying questions relating to energy justice, and is employed in this paper by creating an agent-based model of energy and capabilities. We study the differential needs of people for an energy service (heating) and their effect on a secondary capability (thermal comfort) and a basic capability (health). Furthermore, we look at several conversion factors – both personal and environmental – which mediate the transformation of commodities (e.g. energy services) into capabilities. We then utilize the model over numerous iterations to study questions such as whether equalizing agents’ secondary and basic capabilities can contribute more to energy justice than merely raising the floor of the most vulnerable in terms of energy consumption (a version of Sen’s question “inequality of what?”), and also look at whether such an approach is linear or has a threshold effect. Finally we analyze the results of the simulations for alternative ways of enhancing both human capabilities and ecological functionings, thus promoting sustainable energy justice. The attached files incolde the NetLogo code, as well as output data from the various scenarios described in the paper.
DOI: 10.5281/zenodo.3691906
title: Site occupancy matrices, The River Ouse Project

description: The River Ouse Project was started by Dr Margaret Pilkington and colleagues in the Centre for Continuing Education, University of Sussex. Margaret is now retired with emeritus status and continues to run the project with a team of volunteers, in association with the University of Sussex. The team does botanical surveys of streamside grassland and steep wooded valleys (gills) in the upper reaches of the Sussex Ouse, a short flashy river arising on the southern slopes of the High Weald AONB (Area of Outstanding Natural Beauty). Survey sites are chosen on the basis of species richness, potential for restoration and contribution to flood control, and surveyed using the sampling methods outlined in Rodwell, J S (1992. British Plant Communities, Volume 3, Grasslands and Montane Communities). Survey data are transferred from the paper record taken in the field to Excel spreadsheets, and from there after validation and cleaning into two MySQL (MariaDB) databases, meadows and gills. The file is an extract from the meadows database. It contains binary data of the site occupancy for most of the plants encountered in meadow sites (stands, assemblies) sampled using five 2m x 2m quadrats. Details of the database are available here: River Ouse Project databases. For further details and access to the full database contact the author.