cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10044837
title: Data and Code 1/3 "Public Policies and Global Forest Conservation: Empirical Evidence from National Borders"

description: Data and Code "Public Policies and Global Forest Conservation: Empirical Evidence from National Borders", published in Global Environmental Change, authored by David Wuepper (1,2)*, Thomas Crowther (3), Thomas Lauber (3), Devin Routh (3,4), Solen Le Clec'h (5), Rachael D. Garrett (6,7), Jan Börner (8,9). (1 Land Economics Group, University of Bonn, Germany, 2 Agricultural Economics and Policy Group, ETH Zurich, Switzerland, 3 Global Ecosystem Ecology Group, ETH Zurich, Switzerland, 4 SIT Group, Uiversity of Zurich, Switzerland, 5 Environmental Systems Analysis Group, Wageningen University, Netherlands, 6 Conservation and Development, Cambridge University, UK, 7 Environmental Policy Lab, ETH Zürich, Switzerland, 8 Institute for Food and Resource Economics, University of Bonn, Germany, 9 Center for Development Research, University of Bonn, Germany.
DOI: 10.5281/zenodo.10044838
title: Data and Code 1/3 "Public Policies and Global Forest Conservation: Empirical Evidence from National Borders"

description: Data and Code "Public Policies and Global Forest Conservation: Empirical Evidence from National Borders", published in Global Environmental Change, authored by David Wuepper (1,2)*, Thomas Crowther (3), Thomas Lauber (3), Devin Routh (3,4), Solen Le Clec'h (5), Rachael D. Garrett (6,7), Jan Börner (8,9). (1 Land Economics Group, University of Bonn, Germany, 2 Agricultural Economics and Policy Group, ETH Zurich, Switzerland, 3 Global Ecosystem Ecology Group, ETH Zurich, Switzerland, 4 SIT Group, Uiversity of Zurich, Switzerland, 5 Environmental Systems Analysis Group, Wageningen University, Netherlands, 6 Conservation and Development, Cambridge University, UK, 7 Environmental Policy Lab, ETH Zürich, Switzerland, 8 Institute for Food and Resource Economics, University of Bonn, Germany, 9 Center for Development Research, University of Bonn, Germany.
DOI: 10.5281/zenodo.10047712
title: PdZn/ZrO2+SAPO-34 bifunctional catalyst for CO2 conversion: Further insights by spectroscopic characterization

description: Supplementary material:  atomic concentrations calculated from XPS, XPS spectra
DOI: 10.5281/zenodo.10047711
title: PdZn/ZrO2+SAPO-34 bifunctional catalyst for CO2 conversion: Further insights by spectroscopic characterization

description: Supplementary material:  atomic concentrations calculated from XPS, XPS spectra
DOI: 10.5281/zenodo.10044386
title: Dataset on light measuments in the understory of a Tropical forest restoration submitted to four thinning intensities through chemical management

description: The lack of information on the management of light in tropical forests causes a technical constraint for timber production in restoration sites, especially given the light restrictions for timber production. This issue could be amended with the development of methods to easily manage and estimate light availability, targeting  practices that balance restoration success and productivity. We conducted the study that gathered this data in an area within the Atlantic Forest, Brazil, where we tested the efficiency of chemical thinning fast-growing species to increase light availability in the understory of a five-year-old restoration planting. Our goal was to increase the growth rates of desirable timber species in the understory of the restoration site. Moreover, we tested the viability of using hemispherical photography taken with a smartphone to assess light incidence and assist restoration management practices. We calculated the percentage of photosynthetically active radiation (PAR) using a ceptometer in four different thinning intensities and compared them to the smartphone measures using correlation analysis and generalized mixed models. Chemical thinning increased light incidence in the understory Light management through PAR and canopy opening were highly correlated overall, especially after three months of management and above 60% of the basal area thinned. Data demonstrates the potential of chemical thinning as a management practice to enhance light availability in the understory of tropical forest restoration sites and highlights the value of using smartphones and fisheye clips for the indirect assessment of light conditions.
DOI: 10.5281/zenodo.10044387
title: Dataset on light measuments in the understory of a Tropical forest restoration submitted to four thinning intensities through chemical management

description: The lack of information on the management of light in tropical forests causes a technical constraint for timber production in restoration sites, especially given the light restrictions for timber production. This issue could be amended with the development of methods to easily manage and estimate light availability, targeting  practices that balance restoration success and productivity. We conducted the study that gathered this data in an area within the Atlantic Forest, Brazil, where we tested the efficiency of chemical thinning fast-growing species to increase light availability in the understory of a five-year-old restoration planting. Our goal was to increase the growth rates of desirable timber species in the understory of the restoration site. Moreover, we tested the viability of using hemispherical photography taken with a smartphone to assess light incidence and assist restoration management practices. We calculated the percentage of photosynthetically active radiation (PAR) using a ceptometer in four different thinning intensities and compared them to the smartphone measures using correlation analysis and generalized mixed models. Chemical thinning increased light incidence in the understory Light management through PAR and canopy opening were highly correlated overall, especially after three months of management and above 60% of the basal area thinned. Data demonstrates the potential of chemical thinning as a management practice to enhance light availability in the understory of tropical forest restoration sites and highlights the value of using smartphones and fisheye clips for the indirect assessment of light conditions.
DOI: 10.6084/m9.figshare.24242575
title: Supplementary Material for: Genotypic and phenotypic characteristics of co-trimoxazole-induced cutaneous adverse reactions

description: Background. Co-trimoxazole has been reported as a common culprit drug for various cutaneous adverse drug reactions (CADRs). However, information on genotypic and phenotypic characteristics is still limited. We aimed to study clinical characteristics, genetic suitability, laboratory findings, and treatment outcome in patients with co-trimoxazole-induced CADR and determine variables associated with severe cutaneous adverse reactions (SCARs). Methods. The medical records of all patients diagnosed with co-trimoxazole-induced CADR during October 2015 and October 2021 were reviewed. Clinical characteristics and laboratory investigation with an emphasis on HLA class I and HLA-DRB1 results linked to subtypes of cutaneous adverse reactions were evaluated. Results. Seventy-two patients diagnosed with co-trimoxazole-induced CADR were included in the study. Mean age at diagnosis was 38.0±14.6 years old, and 72% were female. Subtypes of reactions included maculopapular eruption (MPE; 56.9%), drug reaction with eosinophilia and systemic symptoms (DRESS; 23.6%), Stevens-Johnson syndrome (SJS; 12.5%), fixed drug eruption (4.2%), and urticaria (2.8%). Characteristics that were significantly associated with SCARs included male gender (OR=3.01, 95%CI 1.04-8.75), HIV infection (OR=3.48, 95%CI 1.13-10.75), prophylactic use of co-trimoxazole (OR=4.89, 95%CI 1.54-15.57), and co-trimoxazole administration longer than 10 days (OR=7.65, 95%CI 2.57-22.78). HLA-B*38:02 was associated with co-trimoxazole-induced SJS, while HLA-A*11:01, HLA-B*13:01, and HLA-DRB1*12:01 were associated with co-trimoxazole-induced DRESS. HLA-B*52:01 was associated with co-trimoxazole-induced MPE. Conclusions. Co-trimoxazole could induce various phenotypes of CADRs. Genotypic and phenotypic factors that may potentially predict co-trimoxazole-induced SCARs include male gender, HIV infection, prophylactic and prolonged drug use, as well as the presence of HLA-A*11:01, HLA-B*13:01, HLA-B*38:02, or HLA-DRB1*12:01 alleles.
DOI: 10.6084/m9.figshare.24242575.v1
title: Supplementary Material for: Genotypic and phenotypic characteristics of co-trimoxazole-induced cutaneous adverse reactions

description: Background. Co-trimoxazole has been reported as a common culprit drug for various cutaneous adverse drug reactions (CADRs). However, information on genotypic and phenotypic characteristics is still limited. We aimed to study clinical characteristics, genetic suitability, laboratory findings, and treatment outcome in patients with co-trimoxazole-induced CADR and determine variables associated with severe cutaneous adverse reactions (SCARs). Methods. The medical records of all patients diagnosed with co-trimoxazole-induced CADR during October 2015 and October 2021 were reviewed. Clinical characteristics and laboratory investigation with an emphasis on HLA class I and HLA-DRB1 results linked to subtypes of cutaneous adverse reactions were evaluated. Results. Seventy-two patients diagnosed with co-trimoxazole-induced CADR were included in the study. Mean age at diagnosis was 38.0±14.6 years old, and 72% were female. Subtypes of reactions included maculopapular eruption (MPE; 56.9%), drug reaction with eosinophilia and systemic symptoms (DRESS; 23.6%), Stevens-Johnson syndrome (SJS; 12.5%), fixed drug eruption (4.2%), and urticaria (2.8%). Characteristics that were significantly associated with SCARs included male gender (OR=3.01, 95%CI 1.04-8.75), HIV infection (OR=3.48, 95%CI 1.13-10.75), prophylactic use of co-trimoxazole (OR=4.89, 95%CI 1.54-15.57), and co-trimoxazole administration longer than 10 days (OR=7.65, 95%CI 2.57-22.78). HLA-B*38:02 was associated with co-trimoxazole-induced SJS, while HLA-A*11:01, HLA-B*13:01, and HLA-DRB1*12:01 were associated with co-trimoxazole-induced DRESS. HLA-B*52:01 was associated with co-trimoxazole-induced MPE. Conclusions. Co-trimoxazole could induce various phenotypes of CADRs. Genotypic and phenotypic factors that may potentially predict co-trimoxazole-induced SCARs include male gender, HIV infection, prophylactic and prolonged drug use, as well as the presence of HLA-A*11:01, HLA-B*13:01, HLA-B*38:02, or HLA-DRB1*12:01 alleles.
DOI: 10.5281/zenodo.10046806
title: Supported PdZn nanoparticles for selective CO2 conversion, through the grafting of a heterobimetallic complex on CeZrOx

description: Supplementary material:  IR, PXRD, N2 adsorption, EDS, TEM, XPS, EXAFS, testing data
DOI: 10.5281/zenodo.10046805
title: Supported PdZn nanoparticles for selective CO2 conversion, through the grafting of a heterobimetallic complex on CeZrOx

description: Supplementary material:  IR, PXRD, N2 adsorption, EDS, TEM, XPS, EXAFS, testing data
DOI: 10.15131/shef.data.16413288.v1
title: Media representation of Do Not Resuscitate Orders during the first wave of COVID-19 pandemic in the UK

description: Record of selection of articles and data extraction following a search of the NEXIS Media database and a search of professional databases for articles related to Do Not Resuscitate Orders during the first wave fo the COVID-19 pandemic in the UK.<br>Data was extracted using thematic analysis which form the column headings. Separate sheets are used for Media sources extracted from the NEXIS database and Professional journals. Reasons for not including media articles in the final selection are detailed on a separate sheet.
DOI: 10.15131/shef.data.16413288
title: Media representation of Do Not Resuscitate Orders during the first wave of COVID-19 pandemic in the UK

description: Record of selection of articles and data extraction following a search of the NEXIS Media database and a search of professional databases for articles related to Do Not Resuscitate Orders during the first wave fo the COVID-19 pandemic in the UK.<br>Data was extracted using thematic analysis which form the column headings. Separate sheets are used for Media sources extracted from the NEXIS database and Professional journals. Reasons for not including media articles in the final selection are detailed on a separate sheet.
DOI: 10.5066/p965mk53
title: Microsatellite genotypes and metadata for white-tailed deer samples from the Mid-Atlantic region of USA

description: Dataset containing information for white-tailed deer samples from Ohio, Pennsylvania, Maryland, Virginia and New York, genotyped for 11 microsatellites markers. Marker OvirQ should not be used as it presents alleles inconsistent with reported pattern, with some alleles separated by only 1 base pair and inconsistent between runs. Projected coordinates representing sampling location are in a user-defined CRS, similar to USA Contiguous Albers Equal Area Conic: "+proj=aea +lat_1=29.3 +lat_2=45.3 +lat_0=23 +lon_0=-96 +x_0=0 +y_0=0 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs".
DOI: 10.6084/m9.figshare.23292389
title: R codes and source files for wheat DEGs.

description: 1) The file 'source_code_corr.R' was used to generate Figure 3 and 4 in the manuscript.2) The file 'heatmap_script.R' can be used to generate any heatmap using wheat TraesIDs from the gene expression count file 'wheat_RNAseq_DEGs.zip' or available at https://datadryad.org/stash/dataset/doi:10.5061/dryad.zs7h44jcs.3) The Excel file 'Resource_RNAseq.xlsx' contains data used to generate Figures 1-4 in the manuscript.<br>
DOI: 10.6084/m9.figshare.23292389.v1
title: R codes and source files for wheat DEGs.

description: 1) The file 'source-code-corr.docx' was used to generate Figure 3 and 4 in the manuscript. 2) The file 'heatmap script.docx' can be used to generate any heatmap using wheat TraesIDs from the gene expression count file 'wheat_RNAseq_DEGs.zip' or available at https://datadryad.org/stash/dataset/doi:10.5061/dryad.zs7h44jcs. <br> <br>
DOI: 10.5281/zenodo.10044276
title: Reproduction package for "A strong H− opacity signal  in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"

description: This is a basic reproduction package for the paper "A strong H− opacity signal
in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"
by [Jacobs, B.; Désert, J. -M.; Pino, L. et al. (2022)](https://doi.org/10.1051/0004-6361/202244533).
 
Abstract:
We present the analysis of a spectroscopic secondary eclipse of the hottest transiting exoplanet detected to date, KELT-9b, obtained with the Wide Field Camera 3 aboard the Hubble Space Telescope. We complement these data with literature information on stellar pulsations and Spitzer/Infrared Array Camera and Transiting Exoplanet Survey Satellite eclipse depths of this target to obtain a broadband thermal emission spectrum. Our extracted spectrum exhibits a clear turnoff at 1.4 μm. This points to H− bound-free opacities shaping the spectrum. To interpret the spectrum, we perform grid retrievals of self-consistent 1D equilibrium chemistry forward models, varying the composition and energy budget. The model with solar metallicity and C/O ratio provides a poor fit because the H− signal is stronger than expected, requiring an excess of electrons. This pushes our retrievals toward high atmospheric metallicities ([M/H] = 1.98−0.21+0.19) and a C/O ratio that is subsolar by 2.4σ. We question the viability of forming such a high-metallicity planet, and therefore provide other scenarios to increase the electron density in this atmosphere. We also look at an alternative model in which we quench TiO and VO. This fit results in an atmosphere with a slightly subsolar metallicity and subsolar C/O ratio ([M/H] = −0.22−0.13+0.17, log (C/O) = −0.34−0.34+0.19). However, the required TiO abundances are disputed by recent high-resolution measurements of the same planet.
DOI: 10.5281/zenodo.10044275
title: Reproduction package for "A strong H− opacity signal  in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"

description: This is a basic reproduction package for the paper "A strong H− opacity signal
in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"
by [Jacobs, B.; Désert, J. -M.; Pino, L. et al. (2022)](https://doi.org/10.1051/0004-6361/202244533).
 
Abstract:
We present the analysis of a spectroscopic secondary eclipse of the hottest transiting exoplanet detected to date, KELT-9b, obtained with the Wide Field Camera 3 aboard the Hubble Space Telescope. We complement these data with literature information on stellar pulsations and Spitzer/Infrared Array Camera and Transiting Exoplanet Survey Satellite eclipse depths of this target to obtain a broadband thermal emission spectrum. Our extracted spectrum exhibits a clear turnoff at 1.4 μm. This points to H− bound-free opacities shaping the spectrum. To interpret the spectrum, we perform grid retrievals of self-consistent 1D equilibrium chemistry forward models, varying the composition and energy budget. The model with solar metallicity and C/O ratio provides a poor fit because the H− signal is stronger than expected, requiring an excess of electrons. This pushes our retrievals toward high atmospheric metallicities ([M/H] = 1.98−0.21+0.19) and a C/O ratio that is subsolar by 2.4σ. We question the viability of forming such a high-metallicity planet, and therefore provide other scenarios to increase the electron density in this atmosphere. We also look at an alternative model in which we quench TiO and VO. This fit results in an atmosphere with a slightly subsolar metallicity and subsolar C/O ratio ([M/H] = −0.22−0.13+0.17, log (C/O) = −0.34−0.34+0.19). However, the required TiO abundances are disputed by recent high-resolution measurements of the same planet.
DOI: 10.23641/asha.24347761
title: Cochlear synaptopathy and tinnitus in veterans (Bramhall et al., 2023)

description: <b>Purpose:</b> Animal models and human temporal bones indicate that noise exposure is a risk factor for cochlear synaptopathy, a possible etiology of tinnitus. Veterans are exposed to high levels of noise during military service. Therefore, synaptopathy may explain the high rates of noise-induced tinnitus among Veterans. Although synaptopathy cannot be directly evaluated in living humans, animal models indicate that several physiological measures are sensitive to synapse loss, including the auditory brainstem response (ABR), the middle ear muscle reflex (MEMR), and the envelope following response (EFR). The purpose of this study was to determine whether tinnitus is associated with reductions in physiological correlates of synaptopathy that parallel animal studies.<b>Method:</b> Participants with normal audiograms were grouped according to Veteran status and tinnitus report (Veterans with tinnitus, Veterans without tinnitus, and non-Veteran controls). The effects of being a Veteran with tinnitus on ABR, MEMR, and EFR measurements were independently modeled using Bayesian regression analysis.<b>Results:</b> Modeled point estimates of MEMR and EFR magnitude showed reductions for Veterans with tinnitus compared with non-Veterans, with the most evident reduction observed for the EFR. Two different approaches were used to provide context for the Veteran tinnitus effect on the EFR by comparing to agerelated reductions in EFR magnitude and synapse numbers observed in previous studies. These analyses suggested that EFR magnitude/synapse counts were reduced in Veterans with tinnitus by roughly the same amount as over 20 years of aging.<b>Conclusion:</b> These findings suggest that cochlear synaptopathy may contribute to tinnitus perception in noise-exposed Veterans.<b>Supplemental Material S1. </b>Modeled population contrasts in mean auditory brainstem response wave I amplitude.<b>Supplemental Material S2. </b>Modeled population contrasts in mean middle ear muscle reflex magnitude.<b>Supplemental Material S3. </b>Modeled population contrasts in mean envelope following response magnitude.Bramhall, N. F., Theodoroff, S. M., McMillan, G. P., Kampel, S. D., & Buran, B. N. (2023). Associations between physiological correlates of cochlear synaptopathy and tinnitus in a veteran population. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2023_JSLHR-23-00234
DOI: 10.23641/asha.24347761.v1
title: Cochlear synaptopathy and tinnitus in veterans (Bramhall et al., 2023)

description: <b>Purpose:</b> Animal models and human temporal bones indicate that noise exposure is a risk factor for cochlear synaptopathy, a possible etiology of tinnitus. Veterans are exposed to high levels of noise during military service. Therefore, synaptopathy may explain the high rates of noise-induced tinnitus among Veterans. Although synaptopathy cannot be directly evaluated in living humans, animal models indicate that several physiological measures are sensitive to synapse loss, including the auditory brainstem response (ABR), the middle ear muscle reflex (MEMR), and the envelope following response (EFR). The purpose of this study was to determine whether tinnitus is associated with reductions in physiological correlates of synaptopathy that parallel animal studies.<b>Method:</b> Participants with normal audiograms were grouped according to Veteran status and tinnitus report (Veterans with tinnitus, Veterans without tinnitus, and non-Veteran controls). The effects of being a Veteran with tinnitus on ABR, MEMR, and EFR measurements were independently modeled using Bayesian regression analysis.<b>Results:</b> Modeled point estimates of MEMR and EFR magnitude showed reductions for Veterans with tinnitus compared with non-Veterans, with the most evident reduction observed for the EFR. Two different approaches were used to provide context for the Veteran tinnitus effect on the EFR by comparing to agerelated reductions in EFR magnitude and synapse numbers observed in previous studies. These analyses suggested that EFR magnitude/synapse counts were reduced in Veterans with tinnitus by roughly the same amount as over 20 years of aging.<b>Conclusion:</b> These findings suggest that cochlear synaptopathy may contribute to tinnitus perception in noise-exposed Veterans.<b>Supplemental Material S1. </b>Modeled population contrasts in mean auditory brainstem response wave I amplitude.<b>Supplemental Material S2. </b>Modeled population contrasts in mean middle ear muscle reflex magnitude.<b>Supplemental Material S3. </b>Modeled population contrasts in mean envelope following response magnitude.Bramhall, N. F., Theodoroff, S. M., McMillan, G. P., Kampel, S. D., & Buran, B. N. (2023). Associations between physiological correlates of cochlear synaptopathy and tinnitus in a veteran population. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2023_JSLHR-23-00234
DOI: 10.5517/ccdc.csd.cc2f1fxv
title: CCDC 2235717: Experimental Crystal Structure Determination

description: Related Article: Ziyong Wang, Chen Zhang, Jason Wu, Bo Li, Anna Chrostowska, Panaghiotis Karamanis, Shih-Yuan Liu|2023|J.Am.Chem.Soc.|145|5624|doi:10.1021/jacs.3c00514
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggkxf
title: CCDC 2278125: Experimental Crystal Structure Determination

description: Related Article: Yi-Lin Wang, Peng-Xiang Liu, Huan-Huan Zhang, Peng-Fei Xu, Yong-Chun Luo|2023|Chem.Commun.|59|12467|doi:10.1039/D3CC03745B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.