cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23668119.v1
title: fNIRS dataset for the driving risk cognition of passengers in highly automated driving scenarios

description: A total of 20 participants completed this driving simulator experiment. This study complied with the Declaration of Helsinki and was approved by the Institutional Review Board of Tsinghua University, China. Participants were voluntary after the task and informed consent had been explained, and they also were informed that they may terminate this experiment at any time without any type of penalty. This experiment need participants focus on the front scenarios, so few random stimulating sounds are added in each VTD segment. When doing experiment, participant sits in this driving simulator and looks at the front screen. When he feels dangerous or hears a stimulating sound, he is asked to press the keyboard. This dataset is collected using a human factor signal acquisition system, and it includes a driving simulator, a hardware-in-loop equipment, and a host computer. This hardware-in-loop equipment is a Redhawk system, which is a real-time system, and runs Virtual Test Drive (VTD) software; The host computer is a window system and runs Matlab/Simulink, Python module and Oxysoft software. The functions of Matlab/Simulink include the communication between hardware-in-loop equipment and host computer by using User Datagram Protocol (UDP) and the communication between host computer and Oxysoft software; Python module will record the time when they press a keyboard; Oxysoft software and blood oxygen monitoring device work together for acquiring cerebral oxy-haemoglobin change ΔHbO and deoxy-haemoglobin change ΔHbR of passengers. When Matlab/Simulink receives the data about position, velocity and acceleration of ego vehicle and target vehicle (or pedestrian), the raw data of ΔHbO and ΔHbR and participant status, and Matlab/Simulink will joint those data with current time, then compose a new data. When all participants finish this experiment, the new data in same highly automated driving scenario is extracted based on time, and those data is considered as a group. The data of each participant in a highly automated driving scenario is considered as a sample data, and the sample data contains the information of position, velocity acceleration about ego vehicle and target vehicle (or pedestrian) and the raw data of ΔHbO and ΔHbR. Besides, the sample data also contains a kinetic energy field and a flag bit, the kinetic energy field may indicate a danger degree of driving scenario, and it involves relative longitudinal distance and the speed of target vehicle (or pedestrian); The flag bit indicates that whether or not the period in a sample time contains a stimulating sound, if it is true, then the period contains a stimulating sound, or not.
DOI: 10.6084/m9.figshare.19919375.v1
title: Processed and Corrected Data.zip

description: The raw strong motion data of 1999 Chi Chi Earthquake is obtained from the Central Weather Bureau (CWB), Taiwan. CWB has been instrumental in providing an extensive strong motion instrumentation program in Taiwan since 1996, providing the largest strong motion data set of 30,000 digital records from the Chi Chi Earthquake and its aftershocks. The processed and corrected files of 1999 Chi Chi Earthquake using “Energy Based Correction Method” are included as research data files here. All the algorithms described are implemented in the MATLAB programming environment (9.10.0.1739362, R2021a).
DOI: 10.6084/m9.figshare.20326323.v1
title: Phenotypic records of Suhuai pigs for the number of ribs and carcass length

description: Phenotypic records for the number of ribs and carcass length traits
DOI: 10.6084/m9.figshare.28579118.v1
title: RNA-Seq data stats

description: The Mapping_ratio_hisat2.xlsx file is a table of the mapping ratio of Apis cerana japonica RNA-Seq data to genome sequence performed by Hisat2. BUSCO_result.txt contains BUCSO result of the reference <i>A. cerana japonica</i> transcriptome sequence data.<br>
DOI: 10.6084/m9.figshare.6964805.v1
title: Datasets and experiment data of long read alignment using partitioned reference indexes

description: Directories inside this zip file are,<br>--synthetic_reads This directory contains the datasets, scripts and the generated experimental data of the mapping evaluation based on synthetic reads. <br>--chromothriptic_read This directory contains the datasets, scripts and the generated experimental data of the mapping evaluation based on the ultra-long Nanopore chromothriptic read.<br>--nanopore_NA12878_reads This directory contains the scripts and the generated experimental data of the mapping evaluation based on the Nanopore NA12878 reads. The input read set is not included as it is publicly available from http://s3.amazonaws.com/nanopore-human-wgs/rel3-nanopore-wgs-84868110-FAF01132.fastq.gz<br>--indexing_memory_usage Contains the scripts (and their outputs) used to evaluate the peak memory usage of minimap2 with and without chromosome size balancing of the index.<br>--runtimeContains the scripts (and their outputs) used to measure the runtime of a single-idx vs n-part-idx-merged<br> <br><b>See the README.txt in the zip file for more information.</b><br><br>
DOI: 10.6084/m9.figshare.9199502.v1
title: OLR data

description: Outgoing longwave radiation data analyzed in Johnson et al. (2019), provided as Matlab .mat files and processed from NetCDF data (Matlab scripts for processing the NetCDF data are provided in a separate file). The NetCDF source data are freely available on the web:http://olr.umd.edu/<br>
DOI: 10.6084/m9.figshare.28485461.v1
title: reference genomes for <i>Comamonas</i> spp. from NCBI Genbank (Ggenomes listed in Supplementary Table 2Table S2).

description: Draft genomic sequences of a rare environmental pathogen, <i>Comamonas Kerstersii</i><i>Comamonas kerstersii</i>, From Immunocompromised Patients with Acute Gastroenteritis. from From immunocompromised patients with acute gastroenteritis
DOI: 10.6084/m9.figshare.8345678.v5
title: Recurrence quantification analysis of heart rate during mental arithmetic stress in young females

description: The aim of this study is to investigate the effect of mental arithmetic challenge on recurrence plot-based complexity measures of heart rate in young healthy females. RR intervals were recorded in 50 healthy participants for 10 min in the rest and mental arithmetic stress states. The complexity of the heart rate was assessed through recurrence quantiﬁcation analysis (RQA). The RP showed a consistent pattern of more clustering of points during mental stress, with respect to the rest. This suggests that recurrence of heart rate underwent a notable evolution during the transition from rest to mental stress. Thus, the RPs can sensitively reflect the signals from different physiological states. The recurrence plots during mental stress are characterized by the larger length of vertical lines (TT) and a higher percentage of points forming diagonal lines (DET). The results of the research indicate that deterministic structure was present in the heart rate dynamics (DET was statistically greater than 0), but that heart rate variations were not completely deterministic (DET was statistically less than 1). The statistical analysis of RQA measures reveals significant changes in DET, LAM, LMAX, Vmax, and TT during mental stress. Mental arithmetic induced a significant increase of DET to rather a high level. High level of DET indicates that recurrence points are mainly forming diagonals and associated with high predictability of heart rate regulation system. Mental stress elicits a significant increase in the maximum length of the diagonal line LMAX (and decrease in LLE) that indicate diminishing the sensitivity of the heart rate regulation system to initial conditions. We compared rest and stress levels of LAM and TT, and we found the long permanence of the system in a particular state during mental stress. Conclusion. We found that RQA measures of heart rate signals are sensitive to changes in autonomic tone induced by mental arithmetic stress. The recurrence analysis revealed a decrease in the complexity of heart rate variability during mental stress<b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.27758442.v1
title: CO2 transfer in cold lowflow conditions. in vitro comparison of of oxygenators Dataset repository.xlsx

description: perfusion, dataset for CO2 diffusion in different oxygenators.
DOI: 10.6084/m9.figshare.28728617.v1
title: Label Transfer Example Data

description: Single-cell technologies have transformed our understanding of cellular heterogeneity through multimodal data acquisition. However, robust cell alignment remains a major challenge for data integration and harmonization, including batch correction, label transfer, and multiomics integration. Many existing methods constrain alignment based on rigid feature-wise distance metrics, limiting their ability to capture accurate cell correspondence across diverse cell populations and conditions. We introduce scGALA, a graph-based learning framework that redefines cell alignment by combining graph attention networks with a score-driven, task-independent optimization strategy. scGALA constructs enriched graphs of cell–cell relationships by integrating gene expression profiles with auxiliary information such as spatial coordinates and iteratively refines alignment via self-supervised graph link prediction, where a deep neural network is trained to identify and reinforce high-confidence correspondences across datasets. In extensive benchmarks, scGALA identifies over 25 percent more high-confidence alignments without compromising accuracy. By improving the core step of cell alignment, scGALA serves as a versatile enhancer for a wide range of single-cell data integration tasks.
DOI: 10.6084/m9.figshare.26394541.v3
title: <b>Bottom layer temperature and Sea Surfave Height during the Typhoon Lekima</b>

description: Direct observations and a high-resolution ocean model were used to investigate the significant bottom temperature response in the north Yellow Sea (NYS) during weakening and dissipation of typhoon Lekima in August 2019. Strong cyclonic circulation with eastward currents along the southern coast and westward currents along the northern coast of the NYS was generated by the cyclonic typhoon wind. Meanwhile, high sea level occurred along the northern coast of Shandong Peninsula and southern coast of Liaodong Peninsula. Low sea level existed between the northern and southern coast of the NYS. Momentum balance analysis showed that this sea level pattern that lasted for a weak after the typhoon’s dissipation, maintained the eastward currents along the southern coast and westward currents along the northern coast of the NYS in geostrophic balance to the lowest order. The persistent eastward alongshore current drove warm bottom water eastward along the northern coast of Shandong Peninsula, causing significant bottom temperature warming up to 11°C. At the same time, the westward alongshore current transported cold water from region near the YSCWM westward along the southern coast of the Liaodong Peninsula, leading prominent bottom temperature cooling up to 13°C. Temperature budget analysis further confirmed the leading role of horizontal temperature advection related to typhoon induced alongshore currents in the dramatic bottom temperature anomalies. Near-inertial oscillations also disturbed the thermocline and provided favorable condition for the eastward advection of bottom warm water. This study highlights the importance of weaker synoptic weather system instead of strong typhoons on the sharp bottom temperature variations around the coastal regions.
DOI: 10.6084/m9.figshare.7959425.v1
title: The impact of Use Cases in real-world software development projects: A systematic mapping study. (Complementary material)

description: Complementary material for the paper:<br>The impact of Use Cases in real-world software development projects: A systematic mapping study
DOI: 10.6084/m9.figshare.9957455.v1
title: Impact of a campaign for reducing food waste in a university restaurant

description: ABSTRACT The case report evaluates an action for reducing food waste at a food and nutrition unit (UAN) located in a public university. The waste evaluation was performed before and after training actions of UAN employees and a campaign to raise awareness about the diners. The waste was evaluated by the analysis of the amount of food consumed, per capita consumption, percentage of leftovers, average amount of leftover per consumer, percentage of rest of intake and rest of intake per capita. After these actions, food leftovers at the distribution counter and per capita intake debris were significantly reduced. The actions reported in the present study have significantly reduced the amount of food wasted.
DOI: 10.6084/m9.figshare.13160399.v1
title: Trait based responses GEB

description: Climate and land-use change severity alter trait-based responses to habitat conversion. Contains all necessary data and code to reproduce analyses presented in paper.
DOI: 10.6084/m9.figshare.20509917.v1
title: Data Figure 6, JIE

description: Raw data for Figure 6 of the article "The influence of consumer behavior on the environmental footprint of passenger car tires" published in the Journal of Industrial Ecology.
DOI: 10.6084/m9.figshare.24671301.v1
title: Supplementary Material for: The Extrapyramidal Symptom Rating Scale (ESRS) and its Abbreviated version (ESRS-A): A Critical Review of Clinimetric Properties

description: The Extrapyramidal Symptom Rating Scale Abbreviated (ESRS-A) is an abbreviated version of the Extrapyramidal Symptom Rating Scale (ESRS) with instructions, definitions, and a semi-structured interview that follows clinimetric concepts of measuring clinical symptoms. Similar to the ESRS, the ESRS-A was developed to assess four types of Drug-Induced Movement Disorders (DIMD): parkinsonism, akathisia, dystonia, and tardive dyskinesia (TD). 
The present review of the literature provides the most relevant clinimetric properties displayed by the ESRS and ESRS-A in clinical studies. Comprehensive ESRS-A definitions, official scale and basic instructions are provided. 
ESRS inter-rater reliability was evaluated in two pivotal studies and in multi-center international studies. Inter-rater reliability was high for assessing both antipsychotic-induced movement disorders and idiopathic Parkinson’s disease. Guidelines were also established for inter-rater reliability and the rater certification processes. The ESRS showed good concurrent validity with 96% agreement between Abnormal Involuntary Movement Scale (AIMS) for TD-defined cases and ESRS-defined cases. Similarly, concurrent validity for ESRS-A total and subscores for parkinsonism, akathisia, dystonia, and dyskinesia ranged from good to very good. The ESRS was particularly sensitive for detecting DIMD-related movement differences following treatment with placebo, antipsychotics, antiparkinsonian and antidyskinetic medications. ESRS measurement of drug-induced extrapyramidal symptoms was shown to discriminate extrapyramidal symptoms from psychiatric symptoms.
The ESRS and ESRS-A are valid clinimetric indices for measuring drug-induced movement disorders. They can be valuably implemented in clinical research, particularly in trials testing antipsychotic medications, and in clinics to detect the presence, severity, and response to treatment of movement disorders.
DOI: 10.6084/m9.figshare.17153066.v3
title: scRNAseq toy dataset of mouse gastrulation

description: A single-cell molecular map of mouse gastrulation and early organogenesis (aka mouse gastrulation atlas)
DOI: 10.6084/m9.figshare.20013392.v4
title: Both age and social environment shape the phenotype of ant workers

description: The aim of this study was to disentangle the effect of caste and age on ant physiology by analysing their metabolome and proteome. For this purpose, we designed an experiment with four groups : young foragers (Y.F), old foragers (O.F), young nest-workers (Y.NW) and old nest-workers (O.NW). <br> We provide raw proteomics and metabolomics data, data after curation (as used for the statistical analyses); part of the statistical analysis and relevant references for the biologocial processes involved. <br> This dataset is associated with a research article :
DOI: 10.6084/m9.figshare.3516641.v1
title: Appendix C. Determining hurricane impact to coral cover.

description: Determining hurricane impact to coral cover.
DOI: 10.6084/m9.figshare.19064453.v1
title: Supplementary Material for: Genetic variant of CXCR1 (rs2234671) associates with clinical outcome in perihilar cholangiocarcinoma

description: Background Perihilar cholangiocarcinoma (pCCA) is a rare primary liver malignancy. Even in patients amenable to surgery, outcomes are often dismal. Here, we aimed to identify prognostic markers for patient outcomes by analyzing functionally relevant single-nucleotide polymorphisms (SNPs) in genes with a role in tumor inflammation and angiogenesis. We analyzed 11 polymorphisms in the inflammation-angiogenesis axis (VEGF, EGF, EGFR, IL-1b, IL-6, CXCL8 (IL-8), IL-10, CXCR1, HIF1A and COX2 genes) for their prediction of tumor recurrence and survival in pCCA patients undergoing surgery in a curative intent. Methods Samples were obtained from 111 patients with pCCA undergoing liver resection in curative intent. DNA was extracted and analyzed using PCR-RFLP protocols and correlated with patients’ outcomes. Results Out of the assessed variants, only the CXCR1 (also: Interleukine-8-receptor alpha – IL-8RA) +860 C&gt;G heterozygous polymorphism (rs2234671) was associated with decreased disease-free survival (DFS), cancer-specific survival (CSS) and overall survival (OS) (18/111 (16.2%), median DFS 14 months, log-rank p=0.007, median CCS 31 months, log-rank p=0.007, median OS 6 months, log-rank p=0.002), compared to the GG genotype (92/111 (82.9%), median DFS 55 months, median CCS 63 months, median OS 33 months). In multivariate analysis, +860 C&gt;G remained an independent prognostic factor for DFS (adjusted p=0.008), CCS (adjusted p=0.001) and OS (adjusted p=0.001). Conclusion Genetic variant of CXCR1 +860 C&gt;G may serve as a molecular marker for DFS, CSS and OS in patients undergoing curative-intent surgery for pCCA, indicating that the analysis of SNPs in genes involved in immune-mediated angiogenesis may help to identify patient subgroups at high risk for dismal oncological and overall outcome.
DOI: 10.17632/y7pcrp63yp
title: Dataset of brain functional connectome and its maturation in adolescents 

description: We provided the dataset of brain connectome matrices and their similarities measures to self and others longitudinally. The dataset can be used to replicate the results of the manuscript titled “A longitudinal study of functional connectome uniqueness and its association with psychological distress in adolescence”. The functional connectome (whole-brain and 13 networks) matrices were calculated from the resting-state functional MRIs (rs-fMRIs). We collected rs-fMRI and Kessler's psychological distress scale (K10) in 77 adolescents longitudinally up to 9 times from 12 years of age every four months. After removal of data with excessive motion, 262 functional connectome matrices were provided with this paper. The 300 regions of interest (ROIs) were defined using the Greene lab brain atlas. The functional connectome matrices were calculated as correlations between time series from any pair of ROIs extracted from pre-processed fMRIs. This dataset could be potentially used to
1.	understand developmental changes in the functional brain connectivity,
2.	as a normal control database of functional connectome matrices,
3.	develop and validate connectome and network-related analysing methods.
DOI: 10.6084/m9.figshare.28378643.v2
title: Database: ''Daytime Sleepiness, Sleep Quality, and Sarcopenia in Elderly Individuals: Relationships with Falls"

description: The objective of this study was to analyze the correlation between excessive daytime sleepiness, sleep quality, handgrip strength, and falls in older adults with and without a risk for sarcopenia.
DOI: 10.17632/75mm7y7h99
title: Manuscript Sustainable Use of Gypsum Waste

description: This dataset contains detailed experimental information on the sustainable use of gypsum waste in cementitious materials. The data include physical and chemical characterization analyses of recycled gypsum, thermogravimetric analysis (TG/DTG), energy-dispersive spectroscopy (EDS), and mechanical strength tests on soil-cement formulations containing recycled gypsum. The study investigated the influence of different proportions of gypsum, soil, and cement on the final strength of the materials, also considering variations in the curing process. 

The data may be useful for researchers in civil engineering, materials science, and sustainability, especially those interested in the reuse of construction waste in new building materials. 
Keywords: recycled gypsum, sustainable materials, soil-cement, thermogravimetric analysis, mechanical strength, waste recycling.
DOI: 10.6084/m9.figshare.11627406.v1
title: Metadata record for: INVACOST, a public database of the economic costs of biological invasions worldwide

description: This dataset contains key characteristics about the data described in the Data Descriptor INVACOST, a public database of the economic costs of biological invasions worldwide. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format