cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.887704
title: Seawater carbonate chemistry and calcification of juvenile Pocillopora damicornis

description: This study tested the interactive effects of increased seawater temperature and CO2 partial pressure (pCO2) on the photochemistry, bleaching, and early growth of the reef coral Pocillopora damicornis. New recruits were maintained at ambient or high temperature (29 or 30.8 °C) and pCO2 (500 and 1100 µatm) in a full-factorial experiment for 3 weeks. Neither a sharp decline in photochemical efficiency (Fv/Fm) nor evident bleaching was observed at high temperature and/or high pCO2. Furthermore, elevated temperature greatly promoted lateral growth and calcification, while polyp budding exhibited temperature-dependent responses to pCO2. High pCO2 depressed calcification by 28% at ambient temperature, but did not impact calcification at 30.8 °C. Interestingly, elevated temperature in concert with high pCO2 significantly retarded the budding process. These results suggest that increased temperature can mitigate the adverse effects of acidification on the calcification of juvenile P. damicornis, but at a substantial cost to asexual budding.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-03-22.
description: Supplement to: Jiang, Lei; Zhang, Fang; Guo, Ming-Lan; Guo, Ya Juan; Zhang, Yuyang; Zhou, Guowei; Cai, Lin; Lian, Jian-Sheng; Qian, Pei Yuan; Huang, Hui (2018): Increased temperature mitigates the effects of ocean acidification on the calcification of juvenile Pocillopora damicornis, but at a cost. Coral Reefs, 37(1), 71-79
DOI: 10.1594/pangaea.901064
title: Seawater carbonate chemistry and settlement of a robust fouling bryozoan, Bugula neritina during acute exposure experiment

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-04-25.
DOI: 10.1594/pangaea.956222
title: Seawater carbonate chemistry and metabolic rate allometry in intertidal mussels across environmental gradients

description: We assess the role of direct and indirect effects of coastal environmental drivers (including the parameters of the carbonate system) on energy expenditure (MR) and body mass (M) of the intertidal mussel, Perumytilus purpuratus, across 10 populations distributed over 2800 km along the Southern Eastern Pacific (SEP) coast. We find biogeographic and local variation in carbonate system variables mediates the effects of latitude and temperature on metabolic rate allometry along the SEP coast. Also, the fitted Piecewise Structural Equation models (PSEM) have greater predictive ability (conditional R2 = 0.95) relative to the allometric scaling model (R2 = 0.35). The largest standardized coefficients for MR and M were determined by the influence of temperature and latitude, followed by pCO2, pH, total alkalinity, and salinity. Thus, physiological diversity of P. purpuratus along the SEP coast emerges as the result of direct and indirect effects of biogeographic and local environmental variables.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-03-08.
DOI: 10.1594/pangaea.956283
title: Seawater carbonate chemistry and calcification of branches and plates of Porites rus

description: This study tested the hypothesis that intraspecific morphological plasticity within a scleractinian coral elicits differential responses to elevated PCO2 and temperature. In Mo'orea, French Polynesia, two short-term laboratory experiments (21 and 14 days) were conducted to test the effects of PCO2 (400 vs. 700 μatm), and PCO2 (400 vs 1000 μatm) combined with temperature (27.0 vs. 29.8 °C), on branches and plates of Porites rus. Experiments employed two irradiances (1000 vs 200 μmol photons/m**2/s), which characterized the microenvironments on the shallow fringing reefs where branching and plating morphologies are common, respectively. Calcification of both morphologies was insensitive to PCO2, as well as the combined effects of elevated PCO2 and temperature. Mean calcification rates were faster in high light than in low light for both morphologies, and biomass was greater in plates than branches in all treatments. Together, our results suggest P. rus is robust to increased PCO2 and high temperature within the constraints of the treatments applied. Morphological plasticity in this species does not mediate physiological resistance to low pH and high temperature.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-03-08.
DOI: 10.1594/pangaea.956287
title: Seawater carbonate chemistry and calcification of scleractinian coral Acropora pulchra

description: Studies of coral colonies show that ocean acidification and temperature can affect calcification; however, less is known about the consequences for their populations. Understanding intraspecific variation in the response of corals to these conditions will be important for evaluating population-level consequences of environmental change. We examined intraspecific variability in the effects of elevated temperature and carbon dioxide levels on net calcification (Gn) in the coral Acropora pulchra in Moorea, French Polynesia. A common garden experiment showed that Gn in four colonies was affected negatively by high partial pressure of CO2 (pCO2) (1000 μatm cf. 400 μatm ambient conditions), whereas elevated temperature (30 °C cf. 27 °C) had a negative effect on one colony. Together, these results reveal intraspecific variation in the response of Gn to temperature but not to pCO2. The fastest growing colonies under ambient temperature and ambient pCO2 showed the greatest decline in Gn at high temperature and elevated pCO2. For reef corals, effects of temperature and pCO2 on calcification that depend on the intrinsic growth rate have potentially important consequences, because they imply that coral colonies contributing the most to population-level calcification will be disproportionately affected by changing environmental conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-03-08.
DOI: 10.1594/pangaea.967379
title: Seawater carbonate chemistry and composition of fouling communities from the South African west coast

description: This laboratory study assessed how cooling and acidification might affect fouling communities along the South African west coast. Communities were experimentally exposed to two temperatures, 13℃ (current) and 9℃ (cooling), and three pH treatments, 7.9 (current), 7.6 and 7.4, for 18 days. Cooling and acidification altered community structure.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-22.
DOI: 10.1594/pangaea.917678
title: Seawater carbonate chemistry and growth and enzyme activities of Nitzschia closterium

description: In this study, Nitzschia closterium was incubated in seawater at different pH values (8.10, 7.71, and 7.45) and using different nitrogen forms (NO3–N and NH4–N) in the laboratory. The results showed that the growth of N. closterium was inhibited by ocean acidification, with individuals under lower pH levels showing lower growth rates and lower nitrogen uptake rates for both nitrogen forms. The Vmax/Ks ratio decreased with decreasing pH, indicating the inhibition of nitrogen uptake, whereas the ratios for NH4–N cultures were higher than those for NO3–N cultures, implying the highly competitive position of NH4–N. Acidification might induce reactive oxygen species based on the result that the maximum enzyme activities of SuperOxide Dismutase (SOD) and CATalase (CAT) increased under lower pH levels. The SOD and CAT activities for the NO3–N cultures were higher than those for NH4–N cultures at the low pH level, indicating that acidification might cause more oxidative stress for NO3–N cultures than for NH4–N cultures. Thus, ocean acidification might have a more detrimental effect on the growth of N. closterium under NO3–N conditions than NH4–N conditions, with a lower ratio (γ) of the maximum growth rate to the maximum nutrient uptake rate, and a drop in nitrate reductase activity under lower pH levels.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-05-6.
DOI: 10.1594/pangaea.967546
title: Seawater carbonate chemistry and oyster larvae shell area

description: To address CO2-induced changes to estuarine calcification, veliger larvae of two oyster species, the Eastern oyster (Crassostrea virginica), and the Suminoe oyster (Crassostrea ariakensis) were grown in estuarine water under four pCO2 regimes, 280, 380, 560 and 800 matm, to simulate atmospheric conditions in the pre-industrial era, present, and projected future concentrations in 50 and 100 years respectively. CO2 manipulations were made using an automated negative feedback control system that allowed continuous and precise control over the pCO2 in experimental aquaria. Larval growth was measured using image analysis, and calcification was measured by chemical analysis of calcium in their shells.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-30.
DOI: 10.1594/pangaea.907717
title: Seawater carbonate chemistry and mortality, abnormality, morphology, respiration of Heliocidaris crassispi

description: Metallic pollution is of particular concern in coastal cities. In the Asian megacity of Hong Kong, despite water qualities have improved over the past decade, some local zones are still particularly affected and could represent sinks for remobilization of labile toxic species such as copper. Ocean acidification is expected to increase the fraction of the most toxic form of copper (Cu2+) by 2.3-folds by 2100 (pH =7.7), increasing its bioavailability to marine organisms. Multiple stressors are likely to exert concomitant effects (additive, synergic or antagonist) on marine organisms.Here, we tested the hypothesis that copper contaminated waters are more toxic to sea urchin larvae under future pH conditions. We exposed sea urchin embryos and larvae to two low-pH and two copper treatments (0.1 and 1.0 μM) in three separate experiments. Over the short time typically used for toxicity tests (up to 4-arm plutei, i.e. 3 days), larvae of the sea urchin Heliocidaris crassispina were robust and survived the copper levels present in Hong Kong waters today (≤0.19 μM) as well as the average pH projected for 2100. We, however, observed significant mortality with lowering pH in the longer, single-stressor experiment (Expt A: 8-arm plutei, i.e. 9 days). Abnormality and arm asymmetry were significantly increased by pH or/and by copper presence (depending on the experiment and copper level). Body size (d3; but not body growth rates in Expt A) was significantly reduced by both lowered pH and added copper. Larval respiration (Expt A) was doubled by a decrease at pHT from 8.0 to 7.3 on d6. In Expt B1.0 and B0.1, larval morphology (relative arm lengths and stomach volume) were affected by at least one of the two investigated factors.Although the larvae appeared robust, these sub-lethal effects may have indirect consequences on feeding, swimming and ultimately survival. The complex relationship between pH and metal speciation/uptake is not well-characterized and further investigations are urgently needed to detangle the mechanisms involved and to identify possible caveats in routinely used toxicity tests.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-09-30.
description: Supplement to: Dorey, Narimane; Maboloc, Elizaldy; Chan, Kit Yu Karen (2018): Development of the sea urchin Heliocidaris crassispina from Hong Kong is robust to ocean acidification and copper contamination. Aquatic Toxicology, 205, 1-10
DOI: 10.1594/pangaea.913332
title: Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas

description: Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterialbiodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pHmanipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06.
DOI: 10.1594/pangaea.918128
title: Seawater carbonate chemistry and calcification rate of 10 investigated species of marine calcifiers

description: The response of marine-calcifying organisms to ocean acidification (OA) is highly variable, although the mechanisms behind this variability are not well understood. Here, we use the boron isotopic composition (δ11B) of biogenic calcium carbonate to investigate the extent to which organisms' ability to regulate pH at their site of calcification (pHCF) determines their calcification responses to OA. We report comparative δ11B analyses of 10 species with divergent calcification responses (positive, parabolic, threshold, and negative) to OA. Although the pHCF is closely coupled to calcification responses only in 3 of the 10 species, all 10 species elevate pHCF above pHsw under elevated pCO2. This result suggests that these species may expend additional energy regulating pHCF under future OA. This strategy of elevating pHCF above pHsw appears to be a polyphyletic, if not universal, response to OA among marine calcifiers-although not always the principal factor governing a species' response to OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-05-6.
DOI: 10.1594/pangaea.914234
title: Seawater carbonate chemistry and photosynthetic potential, cell density, lipid content of Symbiodinium

description: Dinoflagellates from the Symbiodiniaceae family and corals have an ecologically important endosymbiotic relationship. Scleractinian corals cannot survive for long periods without their symbionts. These algae, also known as zooxanthellae, on the other hand, thrives outside the coral cells. The free-living populations of zooxanthellae are essential for the resilience of the coral to environmental stressors such as temperature anomalies and ocean acidification. Yet, little is known about how ocean acidification may affect the free-living zooxanthellae. In this study we aimed to test morphological, physiological and biochemical responses of zooxanthellae from the Symbiodinium genus isolated from the coral Mussismilia braziliensis, endemic to the Brazilian coast, to acidification led by increased atmospheric CO2. We tested whether photosynthetic yield, cell ultrastructure, cell density and lipid profile would change after up to 16 days of exposure to pH 7.5 in an atmospheric pCO2 of 1633 μatm. Photosynthetic yield and cell density were negatively affected and chloroplasts showed vesiculated thylakoids, indicating morphological damage. Moreover, Symbiodinium fatty acid profile drastically changed in acidified condition, showing lower polyunsaturated fatty acids and higher saturated fatty acids contents, when compared to the control, non-acidified condition. These results show that seawater acidification as an only stressor causes significant changes in the physiology, biochemistry and ultrastructure of free-living Symbiodinium.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
DOI: 10.1594/pangaea.967412
title: Seawater carbonate chemistry and prokaryotic and eukaryotic microbiome of Pacific oyster spat

description: Pacific oysters (Magallana gigas, a.k.a. Crassostrea gigas), the most widely farmed oysters, are under threat from climate change and emerging pathogens. In part, their resilience may be affected by their microbiome, which, in turn, may be influencedinfluencedinfluencedby ocean warming and acidification. To understand these impacts, we exposed early-development Pacific oyster spat to different temperatures (18°C and 24°C) and pCO2 levels (800, 1,600, and 2,800 μatm) in a fully crossed design for 3 weeks.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-23.