DOI: 10.6084/m9.figshare.25196306
title: Iguanas from Above - Raw classifications data and resulting Gold Standard counts

description: AbstractPopulation surveys are vital for wildlife management, yet traditional methods are typically effort-intensive, leading to data gaps. Modern technologies — such as drones — facilitate field surveys but increase the data analysis burden. Citizen Science (CS) can alleviate this issue by engaging non-specialists in data collection and analysis. We evaluated this approach for population monitoring using the endangered Galápagos marine iguana as a case study, assessing citizen scientists’ ability to detect and count animals in aerial images. Comparing against a Gold Standard dataset of expert counts in 4345 images, we explored optimal aggregation methods from CS inputs and evaluated the accuracy of CS counts. During three phases of our project — hosted on Zooniverse.org — over 13,000 volunteers made 1,375,201 classifications from 57,838 images; each being independently classified up to 30 times. Volunteers achieved 68% to 94% accuracy in detecting iguanas, with more false negatives than false positives. Image quality strongly influenced accuracy; by excluding data from suboptimal pilot-phase images, volunteers counted with 91% to 92% of accuracy. For detecting iguanas, the standard ‘majority vote' aggregation approach (where the answer selected is that given by the majority of individual inputs) produced less accurate results than when a minimum threshold of five (from the total independent classifications) was used. For counting iguanas, HDBSCAN clustering yielded the best results. We conclude that CS can accurately identify and count marine iguanas from drone images though there is a tendency to underestimate. CS-based data analysis is still resource-intensive, underscoring the need to develop a Machine Learning approach.MethodsWe created a citizen science project, named Iguanas from Above, in Zooniverse.org. There, we uploaded 'sliced' images from drone imagery belonging to several colonies of the Galápagos marine iguana. Citizen scientists (CS) were asked to classify the images doing two tasks: First to say yes or no for iguana presence in the image and second to count the individuals when present. Each image was classified by 20 or 30 volunteers. Once all the images, corresponding to three phases launched were classified, we downloaded the data from the Zooniverse portal and used the Panoptes Aggregation python package to extract and aggregate CS data (source code: https://github.com/cwinkelmann/iguanas-from-above-zooniverse).We ramdomly selected 5–10% of all the images to create a Gold Standard (GS) dataset. Three experts from the research team identified presence and absence of marine iguanas in the images and count them. The concensus answers are presented in this dataset and is referred as expert data. The aggregated CS data from Task 1 (a total number of yes and no answers per image) was analyzed as accepted for iguana presence when 5 or more volunteers (from the 20–30) selected yes (a minimum threshold rule), otherwise absence was accepted. Then, we compared all CS accepted answers against the expert data, as correct or incorrect, and calculated a percentage of CS accuracy regarding marine iguana detection.For Task 2, we selected all the images identied by the volunteers to have iguanas with this minimum threshold rule and aggregate (summarize) all classifications into one value (count) per image by using the statistical metrics median and mode and the spatial clustering methods DBSCAN and HDBSCAN. The rest of the images obtained 0 counts. CS data was incorporated into this dataset. We then compared total counts in this GS dataset calculated by the expert and all the aggregating methods used in terms of percentages of agreement towards the expert data. These percentages showed CS accuracy regarding marine iguana counting. We also investigated number of marine iguanas under and overestimated with all aggregating methods.Finally, by applying generalized linear models, we used this dataset to explore statistical differences among the different methods used to count marine iguanas (expert, median, mode and HDBSCAN) in the images and how the factors: phase analyzed, quality of the imges (assessed by the experts) and number of marine iguanas present in the image, could affect CS accuracy.