cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14524428
title: Additional file 6 of Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes

description: Additional file 6: Table S6. Positive selection sites identified among 16 genes with synonymous or nonsynonymous mutations
DOI: 10.6084/m9.figshare.14524468.v1
title: Additional file 1 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 1. Data on presence/absence of butterflies during three subsequent surveys of the (former) Milovice military training area, used for past-present comparison, together with life history traits, climatic niche traits, and conservation-related attributes of the species.
DOI: 10.6084/m9.figshare.14524471
title: Additional file 2 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 2. Data on butterfly abundances obtained during current monitoring, plus environmental characteristics of monitoring plots, and life history, climatic niche, and conservation related-attributes of the species.
DOI: 10.6084/m9.figshare.14524476
title: Additional file 1 of Rapid molecular identification of Trichogramma (Hymenoptera: Trichogrammatidae) parasitizing the eggs of the European corn borer, Ostrinia nubilalis (Lepidoptera: Crambidae) in Serbia

description: Additional file 1.. All ITS2 for alignment and multiplex primer design
DOI: 10.6084/m9.figshare.14524471.v1
title: Additional file 2 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 2. Data on butterfly abundances obtained during current monitoring, plus environmental characteristics of monitoring plots, and life history, climatic niche, and conservation related-attributes of the species.
DOI: 10.6084/m9.figshare.14524474.v1
title: Additional file 3 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 3. CCA scores of individual butterfly species, plus species weights, from the current monitoring ordination analyses, final covariate models for refaunation + tanks and ungulates + tanks effects.
DOI: 10.6084/m9.figshare.14524476.v1
title: Additional file 1 of Rapid molecular identification of Trichogramma (Hymenoptera: Trichogrammatidae) parasitizing the eggs of the European corn borer, Ostrinia nubilalis (Lepidoptera: Crambidae) in Serbia

description: Additional file 1.. All ITS2 for alignment and multiplex primer design
DOI: 10.6084/m9.figshare.14524477
title: Additional file 4 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 4. Detailed results of the RDA analyses, interpreting the results of CCA analyses of refaunation / ungulates effects on butterfly assemblages by the constituent butterflies’ life history traits.
DOI: 10.6084/m9.figshare.14524468
title: Additional file 1 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 1. Data on presence/absence of butterflies during three subsequent surveys of the (former) Milovice military training area, used for past-present comparison, together with life history traits, climatic niche traits, and conservation-related attributes of the species.
DOI: 10.6084/m9.figshare.14524477.v1
title: Additional file 4 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 4. Detailed results of the RDA analyses, interpreting the results of CCA analyses of refaunation / ungulates effects on butterfly assemblages by the constituent butterflies’ life history traits.
DOI: 10.6084/m9.figshare.14524474
title: Additional file 3 of Restoring a butterfly hot spot by large ungulates refaunation: the case of the Milovice military training range, Czech Republic

description: Additional file 3. CCA scores of individual butterfly species, plus species weights, from the current monitoring ordination analyses, final covariate models for refaunation + tanks and ungulates + tanks effects.
DOI: 10.6084/m9.figshare.14524485
title: Additional file 2 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 2 Extra eGenes identified by MARS but not by GTEx v6. have been reported by other studies. We used the Whole Blood data of GTEx v6 and identified 2,043 extra eGenes that were not reported by the GTEx consortium (GTEx v6). We compared those extra eGenes with a newer version of data recently published by the GTEx consortium, GTEx v7, as the newer version of the data is expected to contain more eGenes with a bigger sample size. In addition, we compared those extra eGenes with the eGenes reported by Framingham Heart Study (FHS) data that has a large number of samples, 5257 samples, using the Whole Blood data. In each column, ‘0’ indicates the gene is not identified as an eGene and ‘1’ indicates the gene is identified as an eGene.
DOI: 10.6084/m9.figshare.14524485.v1
title: Additional file 2 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 2 Extra eGenes identified by MARS but not by GTEx v6. have been reported by other studies. We used the Whole Blood data of GTEx v6 and identified 2,043 extra eGenes that were not reported by the GTEx consortium (GTEx v6). We compared those extra eGenes with a newer version of data recently published by the GTEx consortium, GTEx v7, as the newer version of the data is expected to contain more eGenes with a bigger sample size. In addition, we compared those extra eGenes with the eGenes reported by Framingham Heart Study (FHS) data that has a large number of samples, 5257 samples, using the Whole Blood data. In each column, ‘0’ indicates the gene is not identified as an eGene and ‘1’ indicates the gene is identified as an eGene.
DOI: 10.6084/m9.figshare.14524488
title: Additional file 3 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 3 List of eGenes identified by MARS, the univariate test, and GTEx 23,163 genes from the Whole Blood data were used for the analysis, which contain at least 50 SNPs in their +/- 1Mb of TSS. We generate null distribution of LRTstats using the Whole Blood data as which contains the maximum number of samples,338. The number of genes is different between tissues due to the sample size differences and etc, thus, for the eGene detection in 44 tissues, we use genes common in each tissue and the Whole Blood data. The first column shows the gene ID, the second column shows eGenes identified by MARS, the third column shows eGenes identified by the univariate test and last column shows the eGenes reported by GTEx consortium. In each column ‘0 ‘indicates the gene is not identified as an eGene and ‘1’ indicates the gene is identified as an eGene.
DOI: 10.6084/m9.figshare.14524491
title: Additional file 4 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 4 List of genes significantly associated with traits in NFBC data detected by MARS and the univariate test. The first column shows the geneID. Only genes at least one of the method, MARS or the univariate test, is significantly associated with the trait is shown. The second column and the third column show whether SNPs +/- 1Mb of TSS of the gene is significantly associated with the trait or not for MARS and the univariate test. Here, ‘1’ indicates the gene is significantly associated with the trait and ‘0’ indicates the gene is not significantly associated with the trait.
DOI: 10.6084/m9.figshare.14524491.v1
title: Additional file 4 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 4 List of genes significantly associated with traits in NFBC data detected by MARS and the univariate test. The first column shows the geneID. Only genes at least one of the method, MARS or the univariate test, is significantly associated with the trait is shown. The second column and the third column show whether SNPs +/- 1Mb of TSS of the gene is significantly associated with the trait or not for MARS and the univariate test. Here, ‘1’ indicates the gene is significantly associated with the trait and ‘0’ indicates the gene is not significantly associated with the trait.
DOI: 10.6084/m9.figshare.14524494
title: Additional file 5 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 5 List of loci found by previous studies among the loci identified by MARS but not by the univariate test
DOI: 10.6084/m9.figshare.14524488.v1
title: Additional file 3 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 3 List of eGenes identified by MARS, the univariate test, and GTEx 23,163 genes from the Whole Blood data were used for the analysis, which contain at least 50 SNPs in their +/- 1Mb of TSS. We generate null distribution of LRTstats using the Whole Blood data as which contains the maximum number of samples,338. The number of genes is different between tissues due to the sample size differences and etc, thus, for the eGene detection in 44 tissues, we use genes common in each tissue and the Whole Blood data. The first column shows the gene ID, the second column shows eGenes identified by MARS, the third column shows eGenes identified by the univariate test and last column shows the eGenes reported by GTEx consortium. In each column ‘0 ‘indicates the gene is not identified as an eGene and ‘1’ indicates the gene is identified as an eGene.
DOI: 10.6084/m9.figshare.14524494.v1
title: Additional file 5 of MARS: leveraging allelic heterogeneity to increase power of association testing

description: Additional file 5 List of loci found by previous studies among the loci identified by MARS but not by the univariate test
DOI: 10.6084/m9.figshare.14524510
title: Additional file 1 of Change in hepatitis C virus positivity among needle-stick injury source patients: a 10-year experience in a Japanese tertiary hospital

description: Additional file 1: Table S1. The number of NSIs in each year.
DOI: 10.6084/m9.figshare.14524510.v1
title: Additional file 1 of Change in hepatitis C virus positivity among needle-stick injury source patients: a 10-year experience in a Japanese tertiary hospital

description: Additional file 1: Table S1. The number of NSIs in each year.
DOI: 10.6084/m9.figshare.13636130
title: Greenhouse gas fluxes (CH4, N2O) collected between 2013-2016 at EucFACE facility, under elevated CO2 conditions

description: This dataset was used for analysis in the paper entitled "Rainfall frequency and soil water availability regulate soil methane and nitrous oxide emissions from a native forest exposed to elevated carbon dioxide". The study was conducted at the Eucalyptus Free-Air CO2 Enrichment (EucFACE) experiment in Sydney, Australia. Methodology can be found in the manuscript. The data set is in excel format with multiple spreadsheets: metadata, site data, rainfall summary 2013-2016, nutrients 2013-2016, GHG 2013-2016_1554 fluxes. Rainfall data comprises monthly indices from the 30 days prior to flux collection. Nutrient data comprises quarterly measurements between 2013-2016. GHG flux data comprises monthly collection between 2013-2016 of pseudo replicates within each CO2 ring in a total of 1554 fluxes.
DOI: 10.6084/m9.figshare.13636130.v1
title: Greenhouse gas fluxes (CH4, N2O) collected between 2013-2016 at EucFACE facility, under elevated CO2 conditions

description: This dataset was used for analysis in the paper entitled "Rainfall frequency and soil water availability regulate soil methane and nitrous oxide emissions from a native forest exposed to elevated carbon dioxide". The study was conducted at the Eucalyptus Free-Air CO2 Enrichment (EucFACE) experiment in Sydney, Australia. Methodology can be found in the manuscript. The data set is in excel format with multiple spreadsheets: metadata, site data, rainfall summary 2013-2016, nutrients 2013-2016, GHG 2013-2016_1554 fluxes. Rainfall data comprises monthly indices from the 30 days prior to flux collection. Nutrient data comprises quarterly measurements between 2013-2016. GHG flux data comprises monthly collection between 2013-2016 of pseudo replicates within each CO2 ring in a total of 1554 fluxes.
DOI: 10.6084/m9.figshare.14524549
title: Additional file 13 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 13: Table S5. Gene Ontology (GO) term tables.
DOI: 10.6084/m9.figshare.14524552
title: Additional file 14 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 14: Table S6. Transcriptome metrics.
DOI: 10.6084/m9.figshare.14524552.v1
title: Additional file 14 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 14: Table S6. Transcriptome metrics.
DOI: 10.6084/m9.figshare.14524555
title: Additional file 15 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 15: Table S7. Summarizing tables on raw read counts, FPKM counts, blast analysis and the lists of differentially expressed (DE) genes between males and females across legs.
DOI: 10.6084/m9.figshare.14524549.v1
title: Additional file 13 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 13: Table S5. Gene Ontology (GO) term tables.
DOI: 10.6084/m9.figshare.14524555.v1
title: Additional file 15 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 15: Table S7. Summarizing tables on raw read counts, FPKM counts, blast analysis and the lists of differentially expressed (DE) genes between males and females across legs.
DOI: 10.6084/m9.figshare.14524564
title: Additional file 18 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 18: Table S8. Summary table of the average gene number and density per scaffold.
DOI: 10.6084/m9.figshare.14524564.v1
title: Additional file 18 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 18: Table S8. Summary table of the average gene number and density per scaffold.
DOI: 10.6084/m9.figshare.14524567.v1
title: Additional file 1 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 1: Table S1. Genome metrics after assembly and genomic libraries used to sequence and assemble M. longipes genome.
DOI: 10.6084/m9.figshare.14524567
title: Additional file 1 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 1: Table S1. Genome metrics after assembly and genomic libraries used to sequence and assemble M. longipes genome.
DOI: 10.6084/m9.figshare.14524576
title: Additional file 4 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 4: Table S2. Summary statistics of the differences in fold-change and expression for the sex-biased genes between the three legs.
DOI: 10.6084/m9.figshare.14524576.v1
title: Additional file 4 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 4: Table S2. Summary statistics of the differences in fold-change and expression for the sex-biased genes between the three legs.
DOI: 10.6084/m9.figshare.14524582
title: Additional file 6 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 6: Table S3. Fisher test statistical analyses of leg and sex biased genes.
DOI: 10.6084/m9.figshare.14524582.v1
title: Additional file 6 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 6: Table S3. Fisher test statistical analyses of leg and sex biased genes.
DOI: 10.6084/m9.figshare.14524588
title: Additional file 8 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 8: Table S4. Summary statistics for dN/dS analyses.
DOI: 10.6084/m9.figshare.14524588.v1
title: Additional file 8 of Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider

description: Additional file 8: Table S4. Summary statistics for dN/dS analyses.
DOI: 10.6084/m9.figshare.14524684
title: Additional file 2 of Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort

description: Additional file 2. Supplementary information tables.
DOI: 10.6084/m9.figshare.14524684.v1
title: Additional file 2 of Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort

description: Additional file 2. Supplementary information tables.
DOI: 10.6084/m9.figshare.14524689.v1
title: Additional file 3 of Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci

description: Additional file 3: Supplementary Tables. Tables S1 to S5. Descriptive characteristics, quality control and processing, and results.
DOI: 10.6084/m9.figshare.14524689
title: Additional file 3 of Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci

description: Additional file 3: Supplementary Tables. Tables S1 to S5. Descriptive characteristics, quality control and processing, and results.
DOI: 10.6084/m9.figshare.14524708.v1
title: Additional file 2 of Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats

description: Additional file 2. R script for phylogenetic congruence matrix.
DOI: 10.6084/m9.figshare.14524708
title: Additional file 2 of Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats

description: Additional file 2. R script for phylogenetic congruence matrix.
DOI: 10.6084/m9.figshare.14524711.v1
title: Additional file 3 of Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats

description: Additional file 3. R script for evolutionary rate model fitting.
DOI: 10.6084/m9.figshare.14524711
title: Additional file 3 of Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats

description: Additional file 3. R script for evolutionary rate model fitting.
DOI: 10.6084/m9.figshare.14524752
title: Additional file 3 of Paleoceanography of the northwestern Pacific across the Early–Middle Pleistocene boundary (Marine Isotope Stages 20–18)

description: Additional file 3: Table S1. Microfossil, Mg/Ca, δ18O, and δ13C data from the CbCS.
DOI: 10.6084/m9.figshare.14524761
title: Additional file 6 of Paleoceanography of the northwestern Pacific across the Early–Middle Pleistocene boundary (Marine Isotope Stages 20–18)

description: Additional file 6: Fig. S4. Supplement figure for Ocean Drilling Program (ODP) Sites 882, 1146, and 871.
DOI: 10.6084/m9.figshare.14524752.v1
title: Additional file 3 of Paleoceanography of the northwestern Pacific across the Early–Middle Pleistocene boundary (Marine Isotope Stages 20–18)

description: Additional file 3: Table S1. Microfossil, Mg/Ca, δ18O, and δ13C data from the CbCS.
DOI: 10.6084/m9.figshare.14524761.v1
title: Additional file 6 of Paleoceanography of the northwestern Pacific across the Early–Middle Pleistocene boundary (Marine Isotope Stages 20–18)

description: Additional file 6: Fig. S4. Supplement figure for Ocean Drilling Program (ODP) Sites 882, 1146, and 871.
DOI: 10.6084/m9.figshare.14524767.v1
title: Additional file 11 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 11: Table S8. Eggnog assigned gene symbols.
DOI: 10.6084/m9.figshare.14524770
title: Additional file 1 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 1: Table S1. Structural genome annotation summary.
DOI: 10.6084/m9.figshare.14524773
title: Additional file 2 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 2: Table S2. tRNA amino acid anti-codon bias.
DOI: 10.6084/m9.figshare.14524767
title: Additional file 11 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 11: Table S8. Eggnog assigned gene symbols.
DOI: 10.6084/m9.figshare.14524776.v1
title: Additional file 3 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 3: Table S3. Best taxonomic classification of coding sequences with known homologs.
DOI: 10.6084/m9.figshare.14524770.v1
title: Additional file 1 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 1: Table S1. Structural genome annotation summary.
DOI: 10.6084/m9.figshare.14524773.v1
title: Additional file 2 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 2: Table S2. tRNA amino acid anti-codon bias.
DOI: 10.6084/m9.figshare.14524776
title: Additional file 3 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 3: Table S3. Best taxonomic classification of coding sequences with known homologs.
DOI: 10.6084/m9.figshare.14524782
title: Additional file 5 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 5: Table S5. Single copy orthologs present in all nine organisms.
DOI: 10.6084/m9.figshare.14524782.v1
title: Additional file 5 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 5: Table S5. Single copy orthologs present in all nine organisms.
DOI: 10.6084/m9.figshare.14524785
title: Additional file 6 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 6: Table S6. Coding and non-coding gene expansion analysis.
DOI: 10.6084/m9.figshare.14524779
title: Additional file 4 of Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

description: Additional file 4: Table S4. KOG/COG functional categories (with key at bottom of spreadsheet).