cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/228ee4b563d4607d5e6ca5ecb6e3f3e2
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Seasonal water table depth data, 2011-2020

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. This data includes water table depth measurements collected from the drying experiment (dry and control) at DryPEHR and winter warming and control treatment plots at CiPEHR for the ice-free period of 2011-2020.
DOI: 10.5281/zenodo.3942213
title: ODP Leg 113, Hole 696B - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: ODP Leg 113: Weddell Sea
DOI: 10.5281/zenodo.3942212
title: ODP Leg 113, Hole 696B - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: ODP Leg 113: Weddell Sea
DOI: 10.5281/zenodo.3942211
title: ODP Leg 113, Hole 693A - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: ODP Leg 113: Weddell Sea
DOI: 10.5281/zenodo.3942210
title: ODP Leg 113, Hole 693A - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: ODP Leg 113: Weddell Sea
DOI: 10.6073/pasta/1d382beba150ee4ff5d7c1b941cf3153
title: Eight Mile Lake Research Watershed, Thaw Gradient: Seasonal water table depth from 2004-2020

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems.
DOI: 10.6084/m9.figshare.14067362.v1
title: OM252 Table S1

description: Supplementary table containing orthologous clusters, genome QC information, and RPKM data.
DOI: 10.5281/zenodo.3990487
title: A Rock Record of Complex Aeolian Bedforms in a Hesperian Desert Landscape: the Stimson formation as exposed in the Murray Buttes, Gale Crater, Mars

description: Aeolian strata encode information about ancient planetary surface processes and the climate at the time of deposition. By decoding these strata, insight can be gained into ancient sediment transport processes, bedform kinematics, the landscape and prevailing climate. Deciphering these environmental signatures requires detailed analysis of the sedimentary architecture to reconstruct the bedforms and conditions enabling them to form. Here we show that a distinct sandstone unit exposed on the foothills of Mount Sharp in Gale crater (Mars) represents the preserved expression of compound aeolian bedforms which accumulated in the centre of a large dune field. Interrogation of Mastcam image data of the Stimson formation shows that it consists of cross-stratified sandstone beds separated by a heirarchy of erosion bounding surfaces that were formed during dune migration. The presence of two orders of surfaces with distinct geometrical relationships enables us to show that the Stimson landscape comprised large dunes (draas) with smaller superimposed dune bedforms migrating across their lee slopes. Analysis of cross-lamination and second-order surface geometries indicate a complex wind regime that transported sediment to the north, constructing oblique dunes. This reconstructed environment is a direct product of the regional climate, and surface processes active in Gale crater during the Hesperian: the environment is shown to be arid, supporting a large aeolian dune field, which contrasts with earlier humid depositional episodes determined from the lacustrine sediments of the Murray formation. Such fine-scale reconstruction of landscapes on the ancient surface of Mars is important to understanding the past climate and habitability. Sanjeev Gupta, Steven Banham and Robert Barnes acknowledge funding from the UK Space Agency (UKSA) (Grant numbers: ST/N000579/1; ST/S001492/1; ST/S001506/1; ST/T001755/1)
DOI: 10.5281/zenodo.3990486
title: A Rock Record of Complex Aeolian Bedforms in a Hesperian Desert Landscape: the Stimson formation as exposed in the Murray Buttes, Gale Crater, Mars

description: Aeolian strata encode information about ancient planetary surface processes and the climate at the time of deposition. By decoding these strata, insight can be gained into ancient sediment transport processes, bedform kinematics, the landscape and prevailing climate. Deciphering these environmental signatures requires detailed analysis of the sedimentary architecture to reconstruct the bedforms and conditions enabling them to form. Here we show that a distinct sandstone unit exposed on the foothills of Mount Sharp in Gale crater (Mars) represents the preserved expression of compound aeolian bedforms which accumulated in the centre of a large dune field. Interrogation of Mastcam image data of the Stimson formation shows that it consists of cross-stratified sandstone beds separated by a heirarchy of erosion bounding surfaces that were formed during dune migration. The presence of two orders of surfaces with distinct geometrical relationships enables us to show that the Stimson landscape comprised large dunes (draas) with smaller superimposed dune bedforms migrating across their lee slopes. Analysis of cross-lamination and second-order surface geometries indicate a complex wind regime that transported sediment to the north, constructing oblique dunes. This reconstructed environment is a direct product of the regional climate, and surface processes active in Gale crater during the Hesperian: the environment is shown to be arid, supporting a large aeolian dune field, which contrasts with earlier humid depositional episodes determined from the lacustrine sediments of the Murray formation. Such fine-scale reconstruction of landscapes on the ancient surface of Mars is important to understanding the past climate and habitability. Sanjeev Gupta, Steven Banham and Robert Barnes acknowledge funding from the UK Space Agency (UKSA) (Grant numbers: ST/N000579/1; ST/S001492/1; ST/S001506/1; ST/T001755/1)
DOI: 10.6084/m9.figshare.14102825
title: Predicted shifts in the distributions of Atlantic reef-building corals in the face of climate change

description: This data was used to predict the shifts in distributions of three key species of Atlantic reef-building corals due to climate change, using Species Distribution Models. This package includes all the R codes, presence data of species and climate layers used in the study (but already prepared - the originals have to be downloaded if wanted). We used the BIOMOD2 framework for producing the SDM maps and the same steps can be easily applied for other species. Presence data for the species was obtained through the GBIF, OBIS and in the literature.<br>For more details, read the README.md file.
DOI: 10.6084/m9.figshare.14102825.v1
title: Predicted shifts in the distributions of Atlantic reef-building corals in the face of climate change

description: This data was used to predict the shifts in distributions of three key species of Atlantic reef-building corals due to climate change, using Species Distribution Models. This package includes all the R codes, presence data of species and climate layers used in the study (but already prepared - the originals have to be downloaded if wanted). We used the BIOMOD2 framework for producing the SDM maps and the same steps can be easily applied for other species. Presence data for the species was obtained through the GBIF, OBIS and in the literature.<br>For more details, read the README.md file.
DOI: 10.5281/zenodo.4560390
title: SELENE_COU

description: Données structurées des glissements sémantiques de COU dans les langues sénégambiennes
DOI: 10.6084/m9.figshare.13507422
title: Metadata record for the manuscript: Clinical behavior and outcomes of breast cancer in young women with germline BRCA pathogenic variants

description: <b>Summary</b> This metadata record provides details of the data supporting the claims of the related manuscript: “Clinical behavior and outcomes of breast cancer in young women with germline BRCA pathogenic variants”. The related study aimed to determine the impact of type of gene (BRCA1 vs. BRCA2) and hormone receptor status (positive [HR+] vs. negative [HR-]) on clinical behaviour and outcomes of <i>mBRCA</i> (germline <i>BRCA</i> pathogenic variant) breast cancer. Type of data: international, multicenter, hospital-based, retrospective cohort study. Subject of data: <i>homo sapiens</i>: young breast cancer (BC) patients carrying a germline <i>BRCA</i> pathogenic variant (<i>mBRCA</i>). Sample size: 1236. Population characteristics: women diagnosed at age ≤ 40 years with invasive early breast cancer (stage I-III) between January 2000 and December 2012. All included patients had a known germline BRCA1 or BRCA2 pathogenic variant. <b>Data access</b> The data generated and analysed during the related study are stored in the following four Excel spreadsheets: ‘Patient survival data.xlsx’, ‘Patient baseline, tumor and treatment data.xlsx’, ‘Patient risk reducing surgery data.xlsx’, ‘Patient eligibility criteria and survival data.xlsx’. These data are not publicly available for the following reason: data contain information that could compromise research participant privacy. However, the data can be made available upon reasonable request to the corresponding author. A list of which data file underlies which figure, table and supplementary table in the related manuscript is provided in the file ‘Lambertini et al underlying data lookup.csv’, included as part of this metadata record. The dataset analysed during this study is described with more details in the following manuscript: https://doi.org/10.1200/JCO.19.02399. <b>Corresponding author(s) for this study</b> Matteo Lambertini, MD PhD, IRCCS Ospedale Policlinico San Martino, University of Genova, Largo Rosanna Benzi 10, 16132 – Genova (Italy), Telephone +39 010 555 4254 – Fax: +39 010 555 6536. E-mail: matteo.lambertini@unige.it. <br> <b>Study approval </b> The Institut Jules Bordet (Brussels, Belgium) coordinated the study and acted as central ethics committee. Ethics approval by the Institutional Review Boards of participating centers and patients’ written informed consent were obtained before inclusion whenever requested by local regulations.
DOI: 10.6084/m9.figshare.13507422.v1
title: Metadata record for the manuscript: Clinical behavior and outcomes of breast cancer in young women with germline BRCA pathogenic variants

description: <b>Summary</b> This metadata record provides details of the data supporting the claims of the related manuscript: “Clinical behavior and outcomes of breast cancer in young women with germline BRCA pathogenic variants”. The related study aimed to determine the impact of type of gene (BRCA1 vs. BRCA2) and hormone receptor status (positive [HR+] vs. negative [HR-]) on clinical behaviour and outcomes of <i>mBRCA</i> (germline <i>BRCA</i> pathogenic variant) breast cancer. Type of data: international, multicenter, hospital-based, retrospective cohort study. Subject of data: <i>homo sapiens</i>: young breast cancer (BC) patients carrying a germline <i>BRCA</i> pathogenic variant (<i>mBRCA</i>). Sample size: 1236. Population characteristics: women diagnosed at age ≤ 40 years with invasive early breast cancer (stage I-III) between January 2000 and December 2012. All included patients had a known germline BRCA1 or BRCA2 pathogenic variant. <b>Data access</b> The data generated and analysed during the related study are stored in the following four Excel spreadsheets: ‘Patient survival data.xlsx’, ‘Patient baseline, tumor and treatment data.xlsx’, ‘Patient risk reducing surgery data.xlsx’, ‘Patient eligibility criteria and survival data.xlsx’. These data are not publicly available for the following reason: data contain information that could compromise research participant privacy. However, the data can be made available upon reasonable request to the corresponding author. A list of which data file underlies which figure, table and supplementary table in the related manuscript is provided in the file ‘Lambertini et al underlying data lookup.csv’, included as part of this metadata record. The dataset analysed during this study is described with more details in the following manuscript: https://doi.org/10.1200/JCO.19.02399. <b>Corresponding author(s) for this study</b> Matteo Lambertini, MD PhD, IRCCS Ospedale Policlinico San Martino, University of Genova, Largo Rosanna Benzi 10, 16132 – Genova (Italy), Telephone +39 010 555 4254 – Fax: +39 010 555 6536. E-mail: matteo.lambertini@unige.it. <br> <b>Study approval </b> The Institut Jules Bordet (Brussels, Belgium) coordinated the study and acted as central ethics committee. Ethics approval by the Institutional Review Boards of participating centers and patients’ written informed consent were obtained before inclusion whenever requested by local regulations.
DOI: 10.5281/zenodo.4560309
title: Close encounters of the three morphs: does color affect aggression in a polymorphic lizard?

description: Here we report the raw data of the lab and field experiments performed to support our study titled "Close encounters of the three morphs: does color affect aggression in a polymorphic lizard?" which has been just accepted for pubblication in Aggressive Behavior. Below the abstract. <em><strong>Abstract</strong>. Color polymorphism is genetically controlled, and the process generating and maintaining morphs can affect speciation/extinction rates. Color badges are useful signals in intraspecific communication because they convey information about alternative strategies and can potentially decrease unnecessary conflicts among different color morphs. Competition and aggressive interactions among color morphs can contribute to polymorphism maintenance. This could lead to an uneven spatial distribution of morphs in a population because the local frequency of each morph establishes the intensity of the competition and the fitness of each male. We used a polymorphic lizard, Podarcis muralis, to assess if aggression varies among morphs under two contrasting hypotheses: a heteromorphic vs. a homomorphic aggression. We used laboratory mirror tests after lizard color manipulation, and we verified the consistency of results with an analysis of the spatial distribution of morphs in a wild population. Both the experiments confirmed that aggression is more common during homomorphic than heteromorphic contests. The adoption of alternative behavioral strategies that minimize risks and costs could facilitate the stable coexistence of the phenotypes and reduce competition. A bias in aggression would advantage rarer morph, which would suffer less harassment by common morphs obtaining a fitness advantage. This process would be negatively frequency-dependent and would stabilize polymorphism, possibly contributing to sympatric speciation</em>
DOI: 10.5281/zenodo.4560308
title: Close encounters of the three morphs: does color affect aggression in a polymorphic lizard?

description: Here we report the raw data of the lab and field experiments performed to support our study titled "Close encounters of the three morphs: does color affect aggression in a polymorphic lizard?" which has been just accepted for pubblication in Aggressive Behavior. Below the abstract. <em><strong>Abstract</strong>. Color polymorphism is genetically controlled, and the process generating and maintaining morphs can affect speciation/extinction rates. Color badges are useful signals in intraspecific communication because they convey information about alternative strategies and can potentially decrease unnecessary conflicts among different color morphs. Competition and aggressive interactions among color morphs can contribute to polymorphism maintenance. This could lead to an uneven spatial distribution of morphs in a population because the local frequency of each morph establishes the intensity of the competition and the fitness of each male. We used a polymorphic lizard, Podarcis muralis, to assess if aggression varies among morphs under two contrasting hypotheses: a heteromorphic vs. a homomorphic aggression. We used laboratory mirror tests after lizard color manipulation, and we verified the consistency of results with an analysis of the spatial distribution of morphs in a wild population. Both the experiments confirmed that aggression is more common during homomorphic than heteromorphic contests. The adoption of alternative behavioral strategies that minimize risks and costs could facilitate the stable coexistence of the phenotypes and reduce competition. A bias in aggression would advantage rarer morph, which would suffer less harassment by common morphs obtaining a fitness advantage. This process would be negatively frequency-dependent and would stabilize polymorphism, possibly contributing to sympatric speciation</em>
DOI: 10.7284/139190
title: Expendable Probe data collected during research cruise LMG1508 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139192
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG1508 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139188
title: Gyrocompass data collected during research cruise LMG1508 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139191
title: INS (Inertial Navigation System) data collected during research cruise LMG1508 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4560410
title: Learning Off-By-One Mistakes: An Empirical Study (MSR 2021 appendix)

description: Appendix of our MSR 2021 paper.
DOI: 10.7284/139398
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP1501 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4560409
title: Learning Off-By-One Mistakes: An Empirical Study (MSR 2021 appendix)

description: Appendix of our MSR 2021 paper.
DOI: 10.17633/rd.brunel.13365947
title: Viking: Discover the Legend Performances

description: Viking: Discover the Legend, August 2019<br>A series of performances including "Shieldmaiden" and "A Very Victorian Tour of the Vikings", designed to animate the museum space and encourage audiences to critically engage with history through the revelation of under represented voices, the colonizing of history, and immersive, interactive engagements with history.<br>Arts Council England and Heritage Lottery Fund had commissioned Dr Maples to design a series of interactive events particularly targeting 18-30 year olds, an age group who have proven difficult to attract to the museum’s exhibitions and events. <br>Through the creation of immersive experience performances, performative “decolonising the museum” tours, participatory workshops with adult themes including a new project on taboo and dark heritage, and the inclusion of social media and games design techniques in the museum space, this project facilitates research into the use of immersive performance and new technologies to transform expectations of the museum site.
DOI: 10.7284/139399
title: Gyrocompass data collected during research cruise NBP1501 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17633/rd.brunel.13365947.v4
title: Viking: Discover the Legend Performances

description: Viking: Discover the Legend, August 2019<br>A series of performances including "Shieldmaiden" and "A Very Victorian Tour of the Vikings", designed to animate the museum space and encourage audiences to critically engage with history through the revelation of under represented voices, the colonizing of history, and immersive, interactive engagements with history.<br>Arts Council England and Heritage Lottery Fund had commissioned Dr Maples to design a series of interactive events particularly targeting 18-30 year olds, an age group who have proven difficult to attract to the museum’s exhibitions and events. <br>Through the creation of immersive experience performances, performative “decolonising the museum” tours, participatory workshops with adult themes including a new project on taboo and dark heritage, and the inclusion of social media and games design techniques in the museum space, this project facilitates research into the use of immersive performance and new technologies to transform expectations of the museum site.