cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3619895_d1
title: Additional file 1 of Wnt signal transduction pathways: modules, development and evolution

description: It is a ‘.zip’ file containing the four figures for NCBI taxonomy, 18S rRNA, pathway and module trees for 99 species-specific Wnt STPs. Moreover, a text file titled, “the_final_trees_newick_format.txt” is provided with the newick format of these trees. (ZIP 253 kb)
DOI: 10.6084/m9.figshare.c.3619880_d10
title: Additional file 9: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: Top 20 pathways enriched by the resistant modulators. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3619880_d11
title: Additional file 8: of Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data

description: Modulator list for the sensitive group. (TXT 428 bytes)
DOI: 10.6084/m9.figshare.c.3619940_d2
title: Additional file 1: of Strategic planning for saving the lives of mothers, newborns and children and preventing stillbirths in KwaZulu-Natal province South Africa: modelling using the Lives Saved Tool (LiST)

description: Sheet 1. Interventions added to List. Additional interventions not included in the LiST Tool, with descriptions, effect sizes and affected fractions. Sheet 2. Adjusted Mortality. Deaths reported to Statistics South Africa, adjusted for under-reporting to estimate actual mortality rates for neonatal and under-five mortality. Sheet 3. Changes in contraceptive mix. Changes in the assumption of proportion of different contraceptive choices used by the population over time (2015 to 2019). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3620108_d5
title: Additional file 1: of Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor

description: Supplementary Tables. (XLSX 1285Â kb)
DOI: 10.6084/m9.figshare.c.3620096_d7
title: Additional file 8: of Repeated cycles of 5-fluorouracil chemotherapy impaired anti-tumor functions of cytotoxic T cells in a CT26 tumor-bearing mouse model

description: Raw data Figure 5, S4, S5, and S6 Cytotoxicity of spleen cells against CT26, 4Â T1 and YAC-1 (Figure 5A-C, and S6A); and concentrations of different cytokines in the supernatants of MTLC (Figure 5D and S4) and serum (Figure 5E and S5). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3620141_d1
title: Additional file 1: of Differential expression profiles of the salivary proteins SP15 and SP44 from Phlebotomus papatasi

description: Sequences of primers used in qRT-PCR. (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3620165_d3
title: Additional file 2: of Providing mental health first aid in the workplace: a Delphi consensus study

description: Endorsed and rejected items including the survey round that they were endorsed or rejected. (XLSX 166Â kb)
DOI: 10.6084/m9.figshare.c.3620255_d7
title: Additional file 10: of Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves

description: Primer information for RT-qPCR validation. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3620279_d2
title: Additional file 6: Figure S5. of Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution

description: Fraction of total TEI compared to the distance between the predicted breakpoint and that determined by alignment of the sequences flanking the TEI loci to PacBio reads, for Jitterbug and RetroSeq (ZIP 27 kb)
DOI: 10.6084/m9.figshare.c.3620258_d7
title: Additional file 1: Table S1. of Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responses

description: Fifty most significant differentially expressed genes in HDM-stimulated versus resting CD4 T cells from HDM-sensitized atopics with asthmatics. Gene expression patterns were compared between HDM-stimulated and unstimulated CD4 T cells from HDM-sensitized atopics with asthma. Here we present the 50 most significant differentially expressed genes. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3620279_d3
title: Additional file 2: Figure S2. of Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution

description: A) Details of Jitterbugâ  s prediction method with the metrics used as filtering criteria highlighted in orange. B) True Positive (TP) and False Positive (FP) predictions plotted according to these metrics. For each metric, TP and FP follow different distributions and thresholds can be determined to eliminate FP without excessive loss of TP. (ZIP 55 kb)
DOI: 10.6084/m9.figshare.c.3620255_d8
title: Additional file 3: of Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves

description: Temporally DE genes list. Sheet 1. Temporally DE genes in the jejunum. Sheet 2. Temporally DE genes in the ileum. (XLSX 186Â kb)
DOI: 10.6084/m9.figshare.c.3620255_d9
title: Additional file 9: of Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves

description: Experimentally validated miRNA-mRNA regulatory pairs. Sheet 1. miRNA-mRNA regulatory pairs in the jejunum. Sheet 2. miRNA-mRNA regulatory pairs in the ileum. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3620255_d10
title: Additional file 2: of Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves

description: Regionally DE genes list. (XLSX 282Â kb)
DOI: 10.6084/m9.figshare.c.3620279_d6
title: Additional file 1: Figure S1. of Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution

description: A) Influence of read mapping quality in false discovery. B) Distribution of the length of the TEs selected to generate the simulated TEI. Longer sequences are over-represented in the False Negatives (p = 0.002). C) Sequence context of false negatives (FN). About 60 % of false negatives can be attributed to lack of coverage or repetitive context. (ZIP 45 kb)
DOI: 10.6084/m9.figshare.c.3620306_d3
title: Additional file 1: of 
                     Vcfanno: fast, flexible annotation of genetic variants

description: Vcfanno configuration file for 50 different attributes from 17 distinct data sets. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3620303_d3
title: Additional file 2: Table S2. of Genes associated with polymorphic variants predicting lung function are differentially expressed during human lung development

description: Expression array probes and results annotated to 54 genes associated with lung function. Probe ID = Affymetrix U133 Plus 2 array probe ID, LogFC = log fold change, AveExpr = average expression throughout development, t = t-statistic describing differential expression, adj.P.Value = Adjusted p value controlling for false discovery rate. Beta coefficient corresponds to the mean change in gene expression per day during the studied period (7–22 weeks of gestational age). (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3620312_d2
title: Additional file 1: of Transcriptome analysis in oak uncovers a strong impact of endogenous rhythmic growth on the interaction with plant-parasitic nematodes

description: Title: Common differentially expressed contigs between treatments. Description: List of common differentially expressed contigs and the respective differential expression level (Log2 of FC) determined by edgeR with a threshold Benjamini-Hochberg adjusted Pâ
DOI: 10.6084/m9.figshare.c.3620543_d1
title: Additional file 2: of Context-dependent associations between heterozygosity and immune variation in a wild carnivore

description: Microsatellite data. (CSV 30 kb)
DOI: 10.6084/m9.figshare.c.3620552_d2
title: MOESM1 of Neuronal fate specification by the Dbx1 transcription factor is linked to the evolutionary acquisition of a novel functional domain

description: Additional file 1. Full alignment of Dbx family proteins. Protein sequence alignment of all Dbx sequences used in this study obtained using the MUSCLE 3.6 software and manually improved. The functional and hypothetical domains are located at the following positions: RD1: 159-169, RD2: 538-548, HD: 824-883 and Cter: 1117-1134.
DOI: 10.6084/m9.figshare.c.3620567_d2
title: Additional file 2: of Deeply divergent sympatric mitochondrial lineages of the earthworm Lumbricus rubellus are not reproductively isolated

description: Structure file. This is the main Structure input file generated by Stacks with the use of one SNP per RAD tag. (TSV 438Â kb)
DOI: 10.6084/m9.figshare.c.3620798_d1
title: MOESM4 of Antibody-based proteomics to identify an apoptosis signature for early recurrence of hepatocellular carcinoma

description: Additional file 4: Table S3. Normalized intensity of protein bands in newly enrolled 40 samples in Group N, A, L, and S.
DOI: 10.6084/m9.figshare.c.3620798_d2
title: MOESM5 of Antibody-based proteomics to identify an apoptosis signature for early recurrence of hepatocellular carcinoma

description: Additional file 5: Table S4. Normalized intensity of protein bands in newly enrolled 40 samples in Group N, A, L, and S.
DOI: 10.6084/m9.figshare.c.3620798_d3
title: MOESM1 of Antibody-based proteomics to identify an apoptosis signature for early recurrence of hepatocellular carcinoma

description: Additional file 1: Table S1. List of antibodies examined in this study.
DOI: 10.15468/dl.7yf6ee
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-5.525877790051226 36.15737531048895,-5.514811773348711 36.15737531048895,-5.514811773348711 36.168441327191466,-5.525877790051226 36.168441327191466,-5.525877790051226 36.15737531048895))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 452 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033928-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620771_d12
title: Additional file 8: Table S1. of Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center

description: Summary of the RNAseq data. In column (A) the gene name of the GRs according to [81], the ORs from [115], the SNMPs modified after [116, 117], the T. castaneum orthologous of D. melanogaster genes named after candidates obtained from [46], the GSTs named after [148], the CYPs named after [150] and the remaining ODE candidates de novo named according to their chromosomal localization (Additional file 15: Figure S11). Column B shows the sequences of the ORF based on published annotations or existing gene models, but modified if necessary. Confirmed gene models are highlighted in grey, modified ones are highlighted in yellow, only partially covered but expressed ones are highlighted in orange, genes with low and scattered coverage are highlighted in red, and not highlighted sequences were not manually checked. Columns Câ  I show the average RPKM values of antennae, mouthparts (piece of the head capsule anterior of the antennae), legs, head (without antennae but including mouthparts), and remaining body of sex-separated adult animals. Columns Jâ  Q show the results of the statistical analysis conducted in R [215] with the DESeq package (version 1.12.0) [216] (from Bioconductor [217], based on five antenna samples and two replicates for the other adult tissues in comparison to body. Columns Pâ  AB show the individual RPKM values of the biological replicates. (XLSX 677 kb)
DOI: 10.6084/m9.figshare.c.3620798_d5
title: MOESM3 of Antibody-based proteomics to identify an apoptosis signature for early recurrence of hepatocellular carcinoma

description: Additional file 3: Table S2. Normalized intensity of protein bands in Individual 40 samples in Group N, A, L, and S.
DOI: 10.6084/m9.figshare.c.3621044_d4
title: Additional file 8: Table S5. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: ToxA-induced protein changes. This table lists the proteins differentially expressed in wild type N2 (first tab) or nipi-3(fr4) (second tab) animals fed E. coli expressing ToxA or the BL21 control for 24Â hours. Relative expression levels are an average of two independent replicates. Primary data are provided (third tab). (XLSX 1584 kb)
DOI: 10.6084/m9.figshare.c.3621044_d5
title: Additional file 7: Table S4. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: NanoString analysis of wild type N2 gene expression on P. aeruginosa or ToxA. This table lists the gene expression fold changes between wild type N2 animals fed P. aeruginosa PA14 and animals fed control OP50 E. coli for 6Â hours or between N2 animals fed E. coli expressing ToxA and animals fed the BL21 control for 24Â hours. Expression values are the average of three (PA14 and OP50) or two (ToxA and BL21 control) independent replicates and normalized to three control genes. Primary data are provided in Additional file 15. (XLSX 22 kb)
DOI: 10.15468/dl.2tus25
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-132.31336 59.95227,-125.56645 59.66572,-132.78225 66.04793,-141.40475 68.73106,-141.3787 59.95227,-132.31336 59.95227))",
 "OccurrenceStatus is Present",
 "TaxonKey is Limnephilus stigma Curtis, 1834"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033929-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621050_d4
title: Additional file 3: of Heterotrimeric G–proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection

description: Alignment of the Gα-subunit protein sequences used for the Gα-phylogeny; the asteriks indicates sequences obtained from Urano et al. ([9, 10]). (XLS 103 kb)
DOI: 10.6084/m9.figshare.c.3621044_d6
title: Additional file 3: Table S2. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: Affymetrix microarray analysis of wild type N2, nipi-3(fr4), and pmk-1(km25) gene expression. This table lists the genes differentially expressed in wild type N2 and nipi-3(fr4) (first tab) or pmk-1(km25) (second tab) animals fed control OP50 E. coli at 20Â Â°C until the L4 stage. Expression values are the average of three independent replicates. Gene ontology terms enriched in each category are listed in the third tab. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3621044_d8
title: Additional file 10: Table S6. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: Proteins misregulated in nipi-3(fr4) or pmk-1(km25) as compared to wild type worms. This table lists the proteins differentially expressed in wild type N2 and nipi-3(fr4) animals fed BL21 control bacteria (first tab) or E. coli expressing ToxA (second tab) for 24Â hours. This table also lists the proteins differentially expressed in wild type N2 and pmk-1(km25) animals fed E. coli expressing ToxA for 24Â hours (third tab). Relative expression levels are an average of two independent replicates. Primary data are provided in Additional file 8. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3621044_d10
title: Additional file 1: Table S1. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: Testing whether ToxA-responsive genes defend against ToxA. This table lists the genes that were previously found to be significantly induced by E. coli expressing ToxA [5] and were inhibited either by RNAi or with mutant alleles to determine whether they are necessary for ToxA resistance. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3621044_d11
title: Additional file 15: of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: Primary data for Figs.Â 1b and 3b, Figures S3a, b, and S7b, and Tables S3 and S4. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3621101_d4
title: Additional file 5: Table S5. of The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

description: Lists the genes selected by πN/πS &gt; mean + 3*SD, πN &gt; mean + 3*SD, and genes highlighted in both this study and by Hayashida et al. [9]. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3621095_d3
title: Additional file 8: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Net fluxes of wildtype. (XLS 81 kb)
DOI: 10.6084/m9.figshare.c.3621101_d5
title: Additional file 1: Table S1. of The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

description: Sequencing data statistics for three T. parva stocks. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3621326_d3
title: Additional file 5: of Being cosmopolitan: evolutionary history and phylogeography of a specialized raptor, the Osprey Pandion haliaetus

description: Alignments used for each analysis: SI1 = cyt b (209 sequences, 1103 nucleotides); SI2 = ND2 (39 sequences, 1078 nucleotides); SI3 = cyt b+ND2 (38 sequences, 2037 nucleotides); SI4 = cyt b (19 haplotypes, 661 nucleotides); SI5 = cyt b+ND2 (14 haplotypes, 2037 nucleotides); SI6 = cyt b network (146 sequences, 661 nucleotides). Refer to the table in Additional file number 2 for matching. (ZIP 27Â kb)
DOI: 10.6084/m9.figshare.c.3621347_d1
title: Additional file 3: of Effectiveness of septoplasty versus non-surgical management for nasal obstruction due to a deviated nasal septum in adults: study protocol for a randomized controlled trial

description: Informed consent materials (in Dutch). a) Informed consent form. b) Patient information brochure. (ZIP 633Â kb)
DOI: 10.6084/m9.figshare.c.3621350_d1
title: Additional file 2: of Diversity and evolutionary genetics of the three major Plasmodium vivax merozoite genes participating in reticulocyte invasion in southern Mexico

description: P. vivax ama1 I-II polymorphisms in isolates from southern Mexico, 2006–2007. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3621314_d8
title: Additional file 9: Dataset S1. of The impact of sequence database choice on metaproteomic results in gut microbiota studies

description: Lists of protein families detected with significantly varying abundance when using different DB types in human and mouse samples. (XLSX 28.0 KB)
DOI: 10.6084/m9.figshare.c.3621374_d4
title: Additional file 5 of Health figures: an open source JavaScript library for health data visualization

description: After scenario questionnaire results. The data contains the results of the After Scenario Questionnaire answered by 14 participants. (CSV 149 kb)
DOI: 10.15468/dl.knptjb
title: Occurrence Download

description: A dataset containing 303608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "DatasetKey is Vascular plants: Online Atlas of Vascular Plants 2012 Onwards",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 303608 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033921-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621641_d2
title: Additional file 6: of Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

description: DECs associated with enriched Pfam and GO terms. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3621641_d3
title: Additional file 1: of Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

description: Results of Illumina sequencing of Quercus robur DF159 cDNA libraries. (XLS 50Â kb)
DOI: 10.6084/m9.figshare.c.3621668_d6
title: Additional file 4: of Synthesis and bio-molecular study of (+)-N-Acetyl-Îą-amino acid dehydroabietylamine derivative for the selective therapy of hepatocellular carcinoma

description: Table S1. Microarray data of DAAD2-sensitive Hep3B cell line. Class comparison analyses using microarray data of DAAD2-sensitive Hep3B cell line provided the lists of genes differentially expressed as a result of DAAD2 treatments. (XLS 229Â kb)
DOI: 10.15468/dl.mtm35d
title: Occurrence Download

description: A dataset containing 463326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alopochen aegyptiaca (Linnaeus, 1766)",
 "Country is Netherlands",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 463326 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033914-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqqq44
title: Occurrence Download

description: A dataset containing 2877990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phasianus colchicus Linnaeus, 1758"
 ]
}

 The dataset includes 2877990 records from 3865 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033915-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbvc68
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces harbinensis Liu et al., 2013"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012927-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6grtq5
title: Occurrence Download

description: A dataset containing 76743 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turdus falcklandii Quoy & Gaimard, 1824"
 ]
}

 The dataset includes 76743 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199244-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvjn8m
title: Occurrence Download

description: A dataset containing 13936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hemidactylus frenatus Duméril & Bibron, 1836",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13936 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045873-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.