cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.han3dc
title: Occurrence Download

description: A dataset containing 3367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is A global database for the distributions of crop wild relatives",
 "TaxonKey is Brassica oleracea var. capitata L."
 ]
}

 The dataset includes 3367 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136222-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33764x
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montanoa serboana B.L.Turner"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182389-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7p7px
title: Occurrence Download

description: A dataset containing 43858 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ruppia maritima L."
 ]
}

 The dataset includes 43858 records from 593 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035605-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xjdvw
title: Occurrence Download

description: A dataset containing 5225 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 4) Distribution and abundance of selected planktonic foraminifera of the Pliocene DSDP Hole 41-366A"
 ]
}

 The dataset includes 5225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000183-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnzzgq
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia ebingeri Yunck."
 ]
}

 The dataset includes 54 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182390-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/msltol
title: Supp Figure 14 Data

description: Includes all applicable data pertaining to Supplemental Figure 14. After 3 days of stimulation with mitogen or plate-bound antibody, PBMCs (n=5 canine donors) were removed from stimulation and transduced with GFP gamma retrovirus. On day 14, the frequency of Tregs was compared between the general CD4+ T cell population and transduced GFP+CD4+ T cells. Data includes all applicable FCS and Prism files.
DOI: 10.15468/dl.pg2dkc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.40881 -52.94345,-70.18835 -53.10349,-69.64932 -53.09477,-69.39012 -52.8058,-69.679 -52.66771,-69.9983 -52.41805,-70.52285 -52.34845,-70.68249 -52.4968,-70.79652 -52.56617,-70.73571 -52.75982,-70.40881 -52.94345))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Ctenomys magellanicus Bennett, 1836, Ctenomys magellanicus fueginus Philippi, 1880, Ctenomys magellanicus magellanicus, Ctenomys magellanicus osgoodi Allen, 1905, Ctenomys magellanicus dicki Osgood, 1943)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022062-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/khibaf
title: Supp Figure 12 Data

description: Includes all applicable data pertaining to Supplemental Figure 12. After 3 days of stimulation with mitogen or plate-bound antibody PBMCs (n=5 canine donors) were removed from stimulation and transduced with GFP gamma retrovirus. CD4 and CD8 expression was compared on day 14 between the general CD3+ T cell population and transduced GFP+CD3+ T cells. Additionally, CD4:CD8 ratio in the general population was compared to the transduced population. Data includes all applicable FCS and Prism files.
DOI: 10.15468/dl.tx54m9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Ledermanniella pollardiana Cheek & Ameka"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022063-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14545249.v1
title: Additional file 4 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 4:. Summary of RNA-seq data of ‘Korso’ and ‘OX-heart’.
DOI: 10.6084/m9.figshare.14545264.v1
title: Additional file 9 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 9: Summary of the SVs genotyping in 271 Brassica oleracea accessions.
DOI: 10.6084/m9.figshare.20315803
title: Additional file 10 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 10: Table S7. The mRNA expression of IMs in PCa.
DOI: 10.6084/m9.figshare.20315803.v1
title: Additional file 10 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 10: Table S7. The mRNA expression of IMs in PCa.
DOI: 10.6084/m9.figshare.14545258
title: Additional file 7 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 7:. Insertions/deletions identified between the Korso and OX-heart genomes.
DOI: 10.6084/m9.figshare.15071260.v1
title: Additional file 8 of Altered neuronal physiology, development, and function associated with a common chromosome 15 duplication involving CHRNA7

description: Additional file 8. Ingenuity Pathways Analysis (IPA) of DEGs specific to the AP, by comparison with two or more of the other (UM, UC-M, and/or UC-F) models. (.xlsx). Significantly enriched: (A) Pathway and (B) Disease-related GO terms are shown, with the p-value and the DEGs from which each term was derived. (C-G) All genes with differential expression between the AP and the three other models (gene list in C: comparison to UM, UC-M, UC-F) were compared with genes (D-E) that were significant in a transcription-wide association study (TWAS) of autism or that (F-G) had genome-wide significance for de novo protein-coding variants associated with neurodevelopmental disorders, as described in the results text. n = 4; data values are in Additional file 5.
DOI: 10.6084/m9.figshare.14545243.v1
title: Additional file 2 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 2: Summary statistics of Brassica oleracea genome assemblies.
DOI: 10.6084/m9.figshare.14545246
title: Additional file 3 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 3:. Base accuracy in genome assemblies estimated by consensus error calls using Illumina short reads.
DOI: 10.6084/m9.figshare.14545261
title: Additional file 8 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 8:. Distribution of SVs in different genomic regions.
DOI: 10.6084/m9.figshare.17169576.v1
title: Additional file 2 of Clinicopathological and molecular genomic features of monomorphic epitheliotropic intestinal T-cell lymphoma in the Chinese population: a study of 20 cases

description: Additional file 2
DOI: 10.6084/m9.figshare.14545237.v1
title: Additional file 11 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 11:. List of candidate curd formation genes associated with selected SVs.
DOI: 10.57935/agr.24069489
title: Natural enemies associated with <i>Silybum marianum</i> (variegated thistle) and the potential for biocontrol

description: This dataset is provided as a supplementary material for the paper (entitled: Potential for biocontrol of <i>Silybum marianum</i> (variegated thistle): 1. Survey of natural enemies in New Zealand) published in New Zealand Entomologist, February 2024.<i>Silybum marianum</i> (L.) Gaertner (variegated thistle, milk thistle) is one of the worst weeds of hill country pasture in the east coast regions of New Zealand. As part of an initial investigation into the potential for biocontrol, a survey of the phytophagous insects associated with <i>S. marianum</i> in New Zealand was carried out at 16 populations from 29 November to 16 December 2021. Phytophagous associations were determined by collecting insects on the plant and by seedhead dissections. The species collected were grouped into three categories: ‘specialists’, ‘generalists’, and ‘tourists’ that comprised 27.4%, 66.3%, and 6.3% of the total number of specimens collected, respectively. The specialist group was almost entirely comprised of the seedhead weevil, <i>Rhinocyllus conicus</i> (Frölich). While adults of <i>R. conicus</i> were commonly collected on variegated thistle, only 6.5% of seedheads contained larvae of the weevil, indicating that <i>S. marianum</i> is not a common developmental host. Generalist species commonly collected on <i>S. marianum</i> included: <i>Nysius caledoniae</i> Distant, <i>Rhypodes clavicornis</i> (F.), <i>Closterotomus norwegicus</i> (Gmelin) and <i>Nezara virdula</i> (L.). Overall, the field surveys document low levels of attack from generalist herbivores and minimal attack by the specialist weevil, <i>R. conicus</i>. In the native range of Europe there are at least 41 insects and 12 fungi sufficiently specialised to be considered for biocontrol. Vacant niches are present on the weed in New Zealand, providing a strong case for introducing specialised biocontrol agents.
DOI: 10.6084/m9.figshare.20315812.v1
title: Additional file 13 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 13: Table S10. HRDscore and existing famous biological pathways based on proteomic data.
DOI: 10.6084/m9.figshare.20315815.v1
title: Additional file 14 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 14: Table S11. The correlation between immune cell type and patient survival based on Cox analyses.
DOI: 10.5281/zenodo.7259583
title: TIL1383I TCR mutation sequencing and SPR binding data

description: Sequence and mutation sequence data for the TIL1383I TCR and surface plasmon resonance data and analysis files for TIL1383I binding to tyrosinase/HLA-A2.
DOI: 10.5281/zenodo.7259584
title: TIL1383I TCR mutation sequencing and SPR binding data

description: Sequence and mutation sequence data for the TIL1383I TCR and surface plasmon resonance data and analysis files for TIL1383I binding to tyrosinase/HLA-A2.
DOI: 10.6084/m9.figshare.13498085
title: Additional file 2 of A pan-kidney cancer study identifies subtype specific perturbations on pathways with potential drivers in renal cell carcinoma

description: Additional file 2: Table S2. Significantly altered pathways of various subtypes.
DOI: 10.15468/dl.cvrsin
title: Occurrence Download

description: A dataset containing 89173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 89173 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004451-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4t7wu
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cipura paradisiaca Ravenna"
 ]
}

 The dataset includes 19 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137985-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aleep9
title: Occurrence Download

description: A dataset containing 28938 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Costaceae"
 ]
}

 The dataset includes 28938 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033799-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bun89e
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Lynx pardinus (Temminck, 1827)"
 ]
}

 The dataset includes 540 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025492-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyykvv
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entoloma hochstetteri (Reichardt) G.Stev."
 ]
}

 The dataset includes 140 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004451-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfmikf
title: Occurrence Download

description: A dataset containing 6975 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia auriculiformis A.Cunn. ex Benth."
 ]
}

 The dataset includes 6975 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004451-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ftq6q
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Agalychnis moreletii (Duméril, 1853)"
 ]
}

 The dataset's 1 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014894-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8129060
title: Dynamic, IPSC-derived Hepatic Tissue Tri-Culture System for the Evaluation of Liver Physiology in vitro

description: This repository is related to the research article entitled "Dynamic, IPSC-derived Hepatic Tissue Tri-Culture System for the Evaluation of Liver Physiology in vitro" by Benedikt Scheidecker et al 2024 Biofabrication 16 025037. DOI 10.1088/1758-5090/ad30c5.

The dataset contains raw RNA sequencing data (FASTQ files generated by paired-end Illumina sequencing of nanoCAGE and Chromium Single Cell 3' Gene Expression libraries) and processed nanoCAGE data files (demultiplexed FASTQ files and sequence alignments in the BED12 file format) produced by the CAGEscan Nextflow pipeline (please see https://gitlab.com/mcfrith/cagescan-pipeline and https://github.com/oist/plessy_CAGEscan_Nextflow for usage details). The nanoCAGE gene expression table (nanoCAGE_exp_table_genes_hg38.csv) was created from BED12 files using the "CAGEr" software package available from Bioconductor. Single cell sequencing data were processed with the dedicated Cell Ranger pipeline available from 10x Genomics.
DOI: 10.15468/dl.aysztp
title: Occurrence Download

description: A dataset containing 13397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-136.30885 25.5553,-49.17961 25.5553,-49.17961 49.18605,-136.30885 49.18605,-136.30885 25.5553))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Triadica sebifera (L.) Small"
 ]
}

 The dataset includes 13397 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025507-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eq68o8
title: Occurrence Download

description: A dataset containing 2628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Megathyrsus maximus (Jacq.) B.K.Simon & S.W.L.Jacobs",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2628 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bk7rmx
title: Occurrence Download

description: A dataset containing 64837 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pluvialis fulva (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 64837 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004451-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10077870
title: Beaufort Gyre westward expansion simulation using a two-layer idelized model

description: This data set supports the analysis presented in the manuscript: "Beta-drift of eddies drove Beaufort Gyre westward expansion during 2003-2014" (2023GL107142), which is under review for publication by Geophysical Research Letters. The model output contains 100 years of simulation for the nine models.The surface stress and deta effect are active, and their grid is configured with a 8 km horizontal resolution. 
Simulation length: 100 yearsSimulation machine: ubuntu on Desktop computerCase name: ctrl, fast moving, slow moving, large area(large tau), stress asymmetry, largeneta,smallbeta, stress-constant,f-planetTime range: 1-5182561 (corresponding to 1 to 100 model year);a model year=360 day;output frequency= 10 day
 
model output:
eta:sea surface height; h1:halocline layer depth;tau: surface stress;u1/v1: halocline layer horizonal velocity
The mat file is named after the corresponding case. However, it is important to note that the data names inside the mat file are not the actual case names, but rather the names used for initial records.
 
The model code modified from       aronnax (https://github.com/edoddridge/aronnax)
please refer to:
Doddridge, E. W., & Radul, A. (2018). Aronnax: An idealised isopycnal ocean model. Journal of Open Source Software, 3(26), 592. http://doi.org/10.21105/joss.00592
for details of this code
DOI: 10.15468/dl.qb2ykb
title: Occurrence Download

description: A dataset containing 435703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((2.479608666666667 48.58410666666667, 2.479608666666667 65.67073733333334, -31.565747 65.67073733333334, -31.565747 48.58410666666667, 2.479608666666667 48.58410666666667))",
 "EventDate is 2019-09-01,2019-09-30"
 ]
}

 The dataset includes 435703 records from 399 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025508-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10983360
title: Daily flood discharge dataset for 10 basins in the Third Pole during 1981‒2100

description: This dataset describes the daily discharge during each river flood event in the 10 Third Pole basins (Indus, Yamuna, Upper Ganges, MahaKali, Karnali, Gandaki, Koshi, Brahmaputra, Salween, and Mekong) in the historical (1981‒2020) and future (2021‒2100). This was achieved using a hybrid model encompassing a validated physical model (Water and Energy Budget-based Distributed Hydrological Model, WEB-DHM) and deep-learning model (Long Short-Term Memory model, LSTM) with the latest climate projections. 

River flood events are defined using both the annual-maximum approach and peak-over-threshold (POT) approach. Details for identification of the annual-maximum and POT flood events are described in the file “readme.txt”. Future data was generated based on the climate projections from five climate models (GFDL-ESM4, IPSL-CM6A-LR, MPI-ESM1-2-HR, MRI-ESM2-0, and UKESM1-0-LL) in phase 6 of the Coupled Model Intercomparison Project (CMIP6) under two shared socio-economic pathway scenarios (SSP) (a high-emission scenario of SSP585 and a low-emission scenario of SSP245). The unit of discharge is m3/s.
DOI: 10.15468/dl.g492sw
title: Occurrence Download

description: A dataset containing 779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Fuchsia thymifolia Kunth"
 ]
}

 The dataset includes 779 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004451-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ui6gtx
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callosobruchus chinensis (Linnaeus, 1758)"
 ]
}

 The dataset includes 283 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027436-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18738/t8/z7tcae/ndttqw
title: LSK068_30.75um_8bu_550x550x1140.raw76.tif
DOI: 10.18738/t8/z7tcae/nvwe4x
title: LSK068_30.75um_8bu_550x550x1140.raw74.tif
DOI: 10.18738/t8/z7tcae/vwmpm0
title: LSK068_30.75um_8bu_550x550x1140.raw75.tif
DOI: 10.15156/bio/sh0968640.10fu
title: SH0968640.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.18738/t8/z7tcae/0hzlml
title: LSK068_30.75um_8bu_550x550x1140.raw78.tif
DOI: 10.18738/t8/z7tcae/hkpftq
title: LSK068_30.75um_8bu_550x550x1140.raw79.tif