cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12178011
title: Additional file 6 of Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation

description: Raw data for graphs with N
DOI: 10.6084/m9.figshare.12178014
title: Additional file 3 of CReM: chemically reasonable mutations framework for structure generation

description: Additional file 3. Tuning parameters used to generate compounds based on CReM framework for the Guacamol goal-directed benchmarks.
DOI: 10.6084/m9.figshare.12178005
title: Additional file 5 of Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation

description: List of primers, smFISH probes and antibodies. Table S1. Sequence and genomic location of gRNAs and primers used for the generation of CRISPR lines. Table S2. List of antibodies. Table S3. List of RT-qPCR primer sequences. Table S4. List of sequences of smFISH probes.
DOI: 10.6084/m9.figshare.12178008
title: Additional file 2 of CReM: chemically reasonable mutations framework for structure generation

description: Additional file 2. Output of the Guacamol goal-directed benchmarks.
DOI: 10.6084/m9.figshare.12178014.v1
title: Additional file 3 of CReM: chemically reasonable mutations framework for structure generation

description: Additional file 3. Tuning parameters used to generate compounds based on CReM framework for the Guacamol goal-directed benchmarks.
DOI: 10.6084/m9.figshare.12178005.v1
title: Additional file 5 of Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation

description: List of primers, smFISH probes and antibodies. Table S1. Sequence and genomic location of gRNAs and primers used for the generation of CRISPR lines. Table S2. List of antibodies. Table S3. List of RT-qPCR primer sequences. Table S4. List of sequences of smFISH probes.
DOI: 10.6084/m9.figshare.12178008.v1
title: Additional file 2 of CReM: chemically reasonable mutations framework for structure generation

description: Additional file 2. Output of the Guacamol goal-directed benchmarks.
DOI: 10.6084/m9.figshare.12178011.v1
title: Additional file 6 of Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation

description: Raw data for graphs with N
DOI: 10.6084/m9.figshare.12177939
title: Additional file 2 of Nanopore basecalling from a perspective of instance segmentation

description: Additional file 2 The polished assembly results of each round in the 10-round polishing process.
DOI: 10.6084/m9.figshare.12177939.v1
title: Additional file 2 of Nanopore basecalling from a perspective of instance segmentation

description: Additional file 2 The polished assembly results of each round in the 10-round polishing process.
DOI: 10.6084/m9.figshare.12177924
title: Additional file 2 of Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome

description: Additional file 2:. List of OTUs significantly influenced by diet.
DOI: 10.6084/m9.figshare.12177918
title: Additional file 1 of Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome

description: Additional file 1:. List of OTUs and corresponding number of reads found in sea bream intestine
DOI: 10.6084/m9.figshare.12177918.v1
title: Additional file 1 of Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome

description: Additional file 1:. List of OTUs and corresponding number of reads found in sea bream intestine
DOI: 10.6084/m9.figshare.12177924.v1
title: Additional file 2 of Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome

description: Additional file 2:. List of OTUs significantly influenced by diet.
DOI: 10.6084/m9.figshare.12177888
title: Additional file 4 of Proteomic analysis reveals sex-specific biomarker signature in postural orthostatic tachycardia syndrome

description: Additional file 4.
DOI: 10.6084/m9.figshare.12177879
title: Additional file 3 of Proteomic analysis reveals sex-specific biomarker signature in postural orthostatic tachycardia syndrome

description: Additional file 3.
DOI: 10.6084/m9.figshare.12177879.v1
title: Additional file 3 of Proteomic analysis reveals sex-specific biomarker signature in postural orthostatic tachycardia syndrome

description: Additional file 3.
DOI: 10.15468/utfes3
title: Two new species of Lauratonema (Nematoda: Lauratonematidae) from the intertidal zone of the East China Sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Y. Z., Guo, Y. Q. (2015): Two new species of Lauratonema (Nematoda: Lauratonematidae) from the intertidal zone of the East China Sea. Journal of Natural History 49 (29): 1777-1788, DOI: 10.1080/00222933.2015.1006285
DOI: 10.6084/m9.figshare.12177888.v1
title: Additional file 4 of Proteomic analysis reveals sex-specific biomarker signature in postural orthostatic tachycardia syndrome

description: Additional file 4.
DOI: 10.6084/m9.figshare.12177750
title: Additional file 6 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 6. csaw_workflow.R—Example R workflow for differential accessibility analysis with csaw as graphically displayed in Fig. 6. Describes process for both TMM and loess normalizations and either supplying MACS2 peak sets as query regions or identifying de novo locally enriched windows.
DOI: 10.6084/m9.figshare.12177744
title: Additional file 4 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 5.naiveOverlapBroad.sh—Bash script for calculating naïve overlap broad peak set from 2 individual replicate peak sets and a pooled replicate peak set. Can be modified for to accept more replicates as desired. See Fig. 4 for usage.
DOI: 10.6084/m9.figshare.12177750.v1
title: Additional file 6 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 6. csaw_workflow.R—Example R workflow for differential accessibility analysis with csaw as graphically displayed in Fig. 6. Describes process for both TMM and loess normalizations and either supplying MACS2 peak sets as query regions or identifying de novo locally enriched windows.
DOI: 10.6084/m9.figshare.12177744.v1
title: Additional file 4 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 5.naiveOverlapBroad.sh—Bash script for calculating naïve overlap broad peak set from 2 individual replicate peak sets and a pooled replicate peak set. Can be modified for to accept more replicates as desired. See Fig. 4 for usage.
DOI: 10.6084/m9.figshare.12177738
title: Additional file 3 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 4.bedpeMinimalConvert.sh—Bash script for converting standard 10-column format BEDPE to the “minimal” format defined by MACS2. See Fig. 4 for usage.
DOI: 10.6084/m9.figshare.12177726
title: Additional file 5 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 2.ATACseq_workflow.txt—Example machine-readable Fig. 4 workflow including stepwise unix and R commands for ATAC-seq data processing.
DOI: 10.6084/m9.figshare.12177729
title: Additional file 2 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 3. bedpeTn5shift.sh—Bash script for shifting coordinates in standard 10-column format BEDPE files to compensate for Tn5 adapter insertion as described in Buenrostro et al. See Fig. 4 for usage.
DOI: 10.6084/m9.figshare.12177738.v1
title: Additional file 3 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 4.bedpeMinimalConvert.sh—Bash script for converting standard 10-column format BEDPE to the “minimal” format defined by MACS2. See Fig. 4 for usage.
DOI: 10.6084/m9.figshare.12177726.v1
title: Additional file 5 of ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation

description: Additional file 2.ATACseq_workflow.txt—Example machine-readable Fig. 4 workflow including stepwise unix and R commands for ATAC-seq data processing.
DOI: 10.6084/m9.figshare.12177720
title: Additional file 3 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 3: Figure S1. Quantile-Quantile (Q-Q) plot was performed to visually evaluate data normality by comparing two probability distributions of theoretical and sample quantiles. Most data points lay close to a linear diagonal line with some points presented within the 95% confidence interval (the grey color band).
DOI: 10.6084/m9.figshare.12177714
title: Additional file 2 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 2: Table S2. Raw data of the measured Hb by the reference LHb and four point-of-care devices (n = 48 specimens).
DOI: 10.6084/m9.figshare.12177720.v1
title: Additional file 3 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 3: Figure S1. Quantile-Quantile (Q-Q) plot was performed to visually evaluate data normality by comparing two probability distributions of theoretical and sample quantiles. Most data points lay close to a linear diagonal line with some points presented within the 95% confidence interval (the grey color band).
DOI: 10.6084/m9.figshare.12177714.v1
title: Additional file 2 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 2: Table S2. Raw data of the measured Hb by the reference LHb and four point-of-care devices (n = 48 specimens).
DOI: 10.6084/m9.figshare.12177708
title: Additional file 1 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 1: Table S1. Raw demographic data of 35 patients included in the study.
DOI: 10.6084/m9.figshare.12177708.v1
title: Additional file 1 of Systematic comparison of four point-of-care methods versus the reference laboratory measurement of hemoglobin in the surgical ICU setting: a cross-sectional method comparison study

description: Additional file 1: Table S1. Raw demographic data of 35 patients included in the study.
DOI: 10.6084/m9.figshare.12177672
title: Additional file 6 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 6: Data S2. Gene expression data for An. coluzzii male vs female antennae.
DOI: 10.6084/m9.figshare.12177678
title: Additional file 7 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 7: Data S3. Gene expression data for An. quadriannulatus male vs female antennae.
DOI: 10.6084/m9.figshare.12177672.v1
title: Additional file 6 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 6: Data S2. Gene expression data for An. coluzzii male vs female antennae.
DOI: 10.6084/m9.figshare.12177678.v1
title: Additional file 7 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 7: Data S3. Gene expression data for An. quadriannulatus male vs female antennae.
DOI: 10.6084/m9.figshare.12177657
title: Additional file 4 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 4: Data S1. Gene expression data for the male antennae of An. coluzzii vs An. quadriannulatus.
DOI: 10.6084/m9.figshare.12177657.v1
title: Additional file 4 of Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae

description: Additional file 4: Data S1. Gene expression data for the male antennae of An. coluzzii vs An. quadriannulatus.
DOI: 10.6084/m9.figshare.12177621
title: Additional file 3 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 3: Table S3. Summary of haplotypes reported from each country.
DOI: 10.6084/m9.figshare.12177621.v1
title: Additional file 3 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 3: Table S3. Summary of haplotypes reported from each country.
DOI: 10.6084/m9.figshare.12177612
title: Additional file 2 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 2: Table S2. Susceptibility indices and allelic and homozygous percentages of mutations in voltage-gated sodium channels in Ae. albopictus collected from used tires in Nepal.
DOI: 10.6084/m9.figshare.12177606
title: Additional file 1 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 1: Table S1. Assigned haplotypes, sample names, accession numbers, collection location and references for all used sequences. Samples in red letters are sequences used in the construction of the haplotype network.
DOI: 10.6084/m9.figshare.12177606.v1
title: Additional file 1 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 1: Table S1. Assigned haplotypes, sample names, accession numbers, collection location and references for all used sequences. Samples in red letters are sequences used in the construction of the haplotype network.
DOI: 10.6084/m9.figshare.12177612.v1
title: Additional file 2 of Distribution and pyrethroid resistance status of Aedes aegypti and Aedes albopictus populations and possible phylogenetic reasons for the recent invasion of Aedes aegypti in Nepal

description: Additional file 2: Table S2. Susceptibility indices and allelic and homozygous percentages of mutations in voltage-gated sodium channels in Ae. albopictus collected from used tires in Nepal.
DOI: 10.15468/8p6uvj
title: Description, molecular phylogeny, and natural history of a new kleptoparasitic species of gelechiid moth (Lepidoptera) associated with Melastomataceae galls in Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Luz, Fernando A., Gonçalves, Gislene L., Moreira, Gilson R. P., Becker, Vitor O. (2015): Description, molecular phylogeny, and natural history of a new kleptoparasitic species of gelechiid moth (Lepidoptera) associated with Melastomataceae galls in Brazil. Journal of Natural History 49 (31): 1849-1875, DOI: 10.1080/00222933.2015.1006284
DOI: 10.6084/m9.figshare.12177588
title: Additional file 6 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 6. Original data of AT gene expression.
DOI: 10.6084/m9.figshare.12177582
title: Additional file 5 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 5. Original data of BW, BCS, CNS, SAA, Glucose and Insulin.
DOI: 10.6084/m9.figshare.12177588.v1
title: Additional file 6 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 6. Original data of AT gene expression.
DOI: 10.6084/m9.figshare.12177582.v1
title: Additional file 5 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 5. Original data of BW, BCS, CNS, SAA, Glucose and Insulin.
DOI: 10.6084/m9.figshare.12177567
title: Additional file 3 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 3. RT-qPCR validation parameters.
DOI: 10.6084/m9.figshare.12177567.v1
title: Additional file 3 of The influence of equine body weight gain on inflammatory cytokine expressions of adipose tissue in response to endotoxin challenge

description: Additional file 3. RT-qPCR validation parameters.
DOI: 10.6084/m9.figshare.12177543
title: Additional file 1 of Isolation and characterization of diverse microbial representatives from the human skin microbiome

description: Additional file 1. This file contains supporting tables and information not included in the primary text.
DOI: 10.6084/m9.figshare.12177543.v1
title: Additional file 1 of Isolation and characterization of diverse microbial representatives from the human skin microbiome

description: Additional file 1. This file contains supporting tables and information not included in the primary text.
DOI: 10.6084/m9.figshare.12177534
title: Additional file 1 of Apolipoprotein-mediated regulation of lipid metabolism induces distinctive effects in different types of breast cancer cells

description: Additional file 1:Supplementary Figure 1. Expression of ApoA-I and ApoE in Transfected MCF-7 and MDA-MB-231 Cells. A. mRNA levels in transfected MCF-7 and MDA-MB-231 cells. mRNA levels of APOA1 and APOE were quantified by RT-qPCR. ns: difference with control not significant. Significant difference compared to control cells: *P &lt;0.05. B and C. Immunofluorescence detection of apoA-I and apoE in transfected MCF-7 and MDA-MB-231 cells. ApoA-I and apoE were detected by immunofluorescence using anti-apoA-I and anti-apoE antibodies and visualized by epifluorescence microscopy (scale = 10 μm).
DOI: 10.6084/m9.figshare.12177534.v1
title: Additional file 1 of Apolipoprotein-mediated regulation of lipid metabolism induces distinctive effects in different types of breast cancer cells

description: Additional file 1:Supplementary Figure 1. Expression of ApoA-I and ApoE in Transfected MCF-7 and MDA-MB-231 Cells. A. mRNA levels in transfected MCF-7 and MDA-MB-231 cells. mRNA levels of APOA1 and APOE were quantified by RT-qPCR. ns: difference with control not significant. Significant difference compared to control cells: *P &lt;0.05. B and C. Immunofluorescence detection of apoA-I and apoE in transfected MCF-7 and MDA-MB-231 cells. ApoA-I and apoE were detected by immunofluorescence using anti-apoA-I and anti-apoE antibodies and visualized by epifluorescence microscopy (scale = 10 μm).
DOI: 10.6084/m9.figshare.12177423
title: Data of nefopam in cancer pain

description: The efficacy of nefopam, a non-opioid, non-steroidal, central acting drug, for cancer pain remains unclear. We evaluated the analgesic efficacy of nefopam for cancer pain.<b> </b>Patients with moderate to severe cancer pain (n=40) were randomly divided into two groups. The nefopam group (n=20) received three 20 mg doses of nefopam every 8 hours. The placebo group (n=20) received normal saline. Intravenous patient-controlled analgesia with morphine was given for breakthrough pain for 48 hours. The primary outcome was significant pain reduction. Secondary outcomes were morphine consumption over 48 hours and incidence of side effects.<br>Article relating to this data published on F1000Research: DOI 10.12688/f1000research.23455.1.<br>
DOI: 10.6084/m9.figshare.12177429
title: The evolution of near-surface wind strength in eastern arid central Asia during the Holocene

description: The database includes ＞10 µm grain-size of the quartz component of eolian sedimentary sequences, CIA, Na/K, Grain-size distributions,and the result of X-ray diffraction.
DOI: 10.6084/m9.figshare.12177420
title: Information of abbreviation data set (5).docx

description: The efficacy of nefopam, a non-opioid, non-steroidal, central acting drug, for cancer pain remains unclear. We evaluated the analgesic efficacy of nefopam for cancer pain. Patients with moderate to severe cancer pain (n=40) were randomly divided into two groups. The nefopam group (n=20) received three 20 mg doses of nefopam every 8 hours. The placebo group (n=20) received normal saline. Intravenous patient-controlled analgesia with morphine was given for breakthrough pain for 48 hours. The primary outcome was significant pain reduction. Secondary outcomes were morphine consumption over 48 hours and incidence of side effects.<br>Article relating to this data published on F1000Research: DOI 10.12688/f1000research.23455.1.<br>
DOI: 10.6084/m9.figshare.12177429.v1
title: The evolution of near-surface wind strength in eastern arid central Asia during the Holocene

description: The database includes ＞10 µm grain-size of the quartz component of eolian sedimentary sequences, CIA, Na/K, Grain-size distributions,and the result of X-ray diffraction.
DOI: 10.6084/m9.figshare.12177420.v1
title: Information of abbreviation data set (5).docx

description: The efficacy of nefopam, a non-opioid, non-steroidal, central acting drug, for cancer pain remains unclear. We evaluated the analgesic efficacy of nefopam for cancer pain. Patients with moderate to severe cancer pain (n=40) were randomly divided into two groups. The nefopam group (n=20) received three 20 mg doses of nefopam every 8 hours. The placebo group (n=20) received normal saline. Intravenous patient-controlled analgesia with morphine was given for breakthrough pain for 48 hours. The primary outcome was significant pain reduction. Secondary outcomes were morphine consumption over 48 hours and incidence of side effects.<br>Article relating to this data published on F1000Research: DOI 10.12688/f1000research.23455.1.<br>
DOI: 10.6084/m9.figshare.12177423.v1
title: Data of nefopam in cancer pain

description: The efficacy of nefopam, a non-opioid, non-steroidal, central acting drug, for cancer pain remains unclear. We evaluated the analgesic efficacy of nefopam for cancer pain.<b> </b>Patients with moderate to severe cancer pain (n=40) were randomly divided into two groups. The nefopam group (n=20) received three 20 mg doses of nefopam every 8 hours. The placebo group (n=20) received normal saline. Intravenous patient-controlled analgesia with morphine was given for breakthrough pain for 48 hours. The primary outcome was significant pain reduction. Secondary outcomes were morphine consumption over 48 hours and incidence of side effects.