cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6djh9w15h
title: A molecular phylogeny of Noctuini (Lepidoptera: Noctuidae: Noctuinae)

description: The tribe Noctuini is comprised over 520 species; many are economically
 important species that impact human agriculture. Despite their diversity
 and relevance, relationships of Noctuini have been difficult to resolve.
 There have been extensive morphological revisions of some of these taxa
 (e.g., Agrotis, Euxoa); however, there are no studies that focus
 exclusively on the phylogenetic relationships of the Noctuini. Currently,
 Noctuini is separated into two subtribes, Agrotina and Noctuina. In this
 study, we tested previous classification schemes with two analyses. The
 total evidence analysis utilized three loci for three outgroup taxa and 54
 noctuine species. Using museum specimens, we collected data from
 cytochrome oxidase I (COI), Dopa Decarboxylase (DDC), and Elongation
 factor 1-α (EF1-α) to generate a dataset of 1378 base pairs (bp) for a
 total evidence approach. We also used previously published COI sequences
 for 626 species, resulting in a matrix of 690 bp, termed “the barcode
 analysis”. We used both Maximum Likelihood and Bayesian approaches for the
 total evidence analysis, and ML for the barcode analysis. In both sets of
 results, we found equivocal support for monophyletic Agrotina and
 Noctuina. We found strong support for smaller, well-described genera
 (e.g., Spaelotis), but poor support for large genera such as Euxoa,
 Feltia, and Agrotis. It is likely that a combination of limited taxon/gene
 sampling, limited gene choice, and the rapid evolution of these species
 resulted in a lack of phylogenetic resolution in the total evidence
 topologies. Based on these results, we recommend increased taxon sampling
 and inclusion of loci that target these rapidly evolving lineages to
 achieve a better understanding of the phylogeny of Noctuini and its
 genera.
DOI: 10.5061/dryad.zs7h44jf3
title: High temperature frequently increases facilitation between aquatic foundation species: A global meta-analysis of interaction experiments between angiosperms, seaweeds, and bivalves

description: Many studies have quantified ecological impacts of individual foundation
 species (FS). However, emerging data suggest that FS often co-occur,
 potentially inhibiting or facilitating one another, thereby causing
 indirect, cascading effects on surrounding communities. Furthermore,
 global warming is accelerating, but little is known about how interactions
 between co-occurring FS vary with temperature. Shallow aquatic sedimentary
 systems are often dominated by three types of FS: slower-growing clonal
 angiosperms, faster-growing solitary seaweeds, and shell-forming filter-
 and deposit-feeding bivalves. Here, we tested the impacts of one FS on
 another by analyzing manipulative interaction experiments from 148 papers
 with a global meta-analysis. We calculated 1,942 (non-independent) Hedges’
 g effect sizes, from 11,652 extracted values over performance responses,
 such as abundances, growths or survival of FS, and their associated
 standard deviations and replication levels. Standard aggregation
 procedures generated 511 independent Hedges’ g that was classified into
 six types of reciprocal impacts between FS. We found that (i) seaweeds had
 consistent negative impacts on angiosperms across performance responses,
 organismal sizes, experimental approaches, and ecosystem types; (ii)
 angiosperms and bivalves generally had positive impacts on each other
 (e.g., positive effects of angiosperms on bivalves were consistent across
 organismal sizes and experimental approaches, but angiosperm effects on
 bivalve growth and bivalve effect on angiosperm abundance were not
 significant); (iii) bivalves positively affected seaweeds (particularly on
 growth responses); (iv) there were generally no net effects of seaweeds on
 bivalves (except for positive effect on growth) or angiosperms on seaweeds
 (except for positive effect on ‘other processes’); and (v) bivalve
 interactions with other FS were typically more positive at higher
 temperatures, but angiosperm-seaweed interactions were not moderated by
 temperature. Synthesis: Despite variations in experimental and
 spatiotemporal conditions, the stronger positive interactions at higher
 temperatures suggest that facilitation, particularly involving bivalves,
 may become more important in a future warmer world. Importantly,
 addressing research gaps, such as the scarcity of FS interaction
 experiments from tropical and freshwater systems and for less studied
 species, as well as testing for density-dependent effects, could better
 inform aquatic ecosystem conservation and restoration efforts and broaden
 our knowledge of FS interactions in the Anthropocene.
DOI: 10.5061/dryad.02v6wwq79
title: Persisting effects in Daphnia magna following an acute exposure to flowback and produced waters from the Montney Formation

description: Hydraulic fracturing extracts oil and gas through the injection of water
 and proppants into subterranean formations. These injected fluids mix with
 the host rock formation and return to the surface as a complex wastewater
 containing salts, metals, and organic compounds, termed flowback and
 produced water (FPW). Previous research indicates that FPW is toxic to
 Daphnia magna (D. magna), impairing reproduction, molting, and maturation
 time; however, recovery from FPW has not been extensively studied. Species
 unable to recover have drastic impacts on populations on the ecological
 scale; thus, this study sought to understand if recovery from an acute 48
 h FPW exposure was possible in the freshwater invertebrate, D. magna by
 using a combination of physiological and molecular analyses. FPW (0.75%)
 reduced reproduction by 30% and survivorship to 32% compared to controls.
 System-level quantitative proteomic analyses demonstrate extensive
 perturbation of metabolism and protein transport in both 0.25 and 0.75%
 FPW treatments after a 48 h FPW exposure. Collectively, our data indicate
 that D. magna are unable to recover from acute 48 h exposures to ≥0.25%
 FPW, as evidence of toxicity persists for at least 19 days post-exposure.
 This study highlights the importance of considering persisting effects
 following FPW remediation when modeling potential spill scenarios.
DOI: 10.5061/dryad.kd51c5bbf
title: ECG and EEG stress features for: ECG and EEG based detection and multilevel classification of stress using machine learning for specified genders: A preliminary study

description: Mental health, especially stress, plays a crucial role in the quality of
 life. During different phases (luteal and follicular phases) of the
 menstrual cycle, women may exhibit different responses to stress from men.
 This, therefore, may have an impact on stress detection and classification
 accuracy of machine learning models that genders are not taken into
 account. However, this has never been investigated before. In addition,
 only a handful of stress detection devices are scientifically validated.
 To this end, this work proposes stress detection and multilevel stress
 classification models for unspecified and specified genders through ECG
 and EEG signals. Models for stress detection are achieved through
 developing and evaluating multiple individual classifiers. On the other
 hand, stacking technique is employed to obtain models for multilevel
 stress classification. ECG and EEG features extracted from 40 subjects (21
 females and 19 males) were used to train and validate the models. In the
 low&high combined stress condition, RBF-SVM and kNN yielded the
 highest average classification accuracy for females (79.81%) and males
 (73.77%), respectively. Combining ECG and EEG, the average classification
 accuracy increased to at least 87.58% (male, high stress) and up to 92.70%
 (female, high stress). For multilevel stress classification from ECG and
 EEG, the accuracy for females was 62.60% and for males was 71.57%. This
 study shows that the difference in genders influences the classification
 performance for both the detection and multilevel classification of
 stress. The developed models can be used for both personal (through ECG)
 and clinical (through ECG and EEG) stress monitoring with and without
 taking genders into account.
description: ECG and EEG features were extracted while participants rest with
 eyes open (EO period), low-stress mental arithmetic task (AC1 period), and
 high-stress mental arithmetic task (AC2 period).
description: Microsoft Excel
DOI: 10.5061/dryad.931zcrjqq
title: Developmental environment has lasting effects on amphibian behavior and thermal physiology

description: Environmental challenges early in development can result in complex
 phenotypic trade-offs and long-term effects on individual physiology,
 performance, and behavior, with implications for disease and predation
 risk. We examined the effects of simulated pond-drying and elevated water
 temperatures on development, growth, thermal physiology, and behavior in a
 widespread North American amphibian, the Southern leopard frog, Rana
 sphenocephala. Tadpoles were raised in outdoor mesocosms under warming and
 drying regimes based on projected climatic conditions in 2070. We
 predicted that amphibians experiencing the rapid pond drying and elevated
 pond temperatures associated with climate change would accelerate
 development, be smaller at metamorphosis and demonstrate long-term
 differences in physiology and exploratory behavior post-metamorphosis.
 While both drying and warming accelerated development and reduced survival
 to metamorphosis, only drying resulted in smaller animals at
 metamorphosis. At approximately one month post-metamorphosis, animals from
 the control (ambient no-drying) treatment jumped relatively farther at
 high temperatures in jumping trials. In addition, across all treatments,
 frogs with shorter larval periods had lower critical thermal minima and
 maxima. We also found evidence that developing under warming and drying
 resulted in a less exploratory behavioral phenotype, and that drying, but
 not warming, resulted in warmer thermal preferences. Furthermore, behavior
 predicted thermal preference, with less exploratory animals selecting
 higher temperatures. Our results underscore the multi-faceted effects of
 early developmental environments on behavioral and physiological
 phenotypes later in life. For example, thermal preferences can influence
 disease risk through behavioral thermoregulation, and exploratory behavior
 may increase risk of predation or pathogen encounter. By impacting thermal
 physiology, behavior, and various physiological traits, climatic stressors
 during development may mediate amphibian exposure and susceptibility to
 predators and pathogens into adulthood.
description: Please see publication for full details regarding data collection
 and analysis.
DOI: 10.5061/dryad.31zcrjdr4
title: Raised bogs are the key source of methane in West Siberia terrestrial seeps

description: The expansive plains of western Siberia contain globally significant
 carbon stocks, with the largest peatland complex in the world overlying
 the planet’s largest known hydrocarbon basin. Numerous terrestrial methane
 seeps have been recently discovered on this landscape, located along the
 Ob and Irtysh River floodplains in hotspots covering more than 2,500 km2.
 The origin of methane from these seeps is a matter of both practical and
 academic interest. The release of even negligible portions of western
 Siberia’s vast carbon pool will have global climate implications. We
 articulated three hypotheses to explain the origin and migration pathways
 of methane within these seeps: (H1) uplift of Cretaceous-aged methane from
 deep petroleum reservoirs along faults and fractures, (H2) release of
 Oligocene-aged methane capped or trapped by degrading permafrost, and (H3)
 horizontal migration of Holocene-aged methane from surrounding peatlands.
 We tested these hypotheses using a range of geochemical tools on gas and
 water samples extracted from seeps, peatlands, and aquifers across the
 120,000 km2 study area. Seep-gas composition, radiocarbon age, and stable
 isotope fingerprints favor the peatland hypothesis of seep-methane origin.
 We identified the dominant metabolic pathways of mid Holocene-aged 14CH4,
 absent of oxidation, all the way from raised bogs to seeps along the
 floodplains of the Ob and Irtysh Rivers. Observed 13C-depletion of
 methane, along with concentration decreases between source and seeps,
 could be associated with mixing between two sources with different
 conditions for methane production: raised bogs with CO2 reduction
 methanogenesis and groundwater with acetate fermentation methanogenesis.
 Our findings highlight the importance of lateral migration between typical
 boreal landscapes via groundwater, implying intimate connections between
 them. Lateral migration may result in high methane emissions from
 groundwater-fed rivers of the region. These methane hotspots could be
 potentially overlooked in the West Siberia Lowlands and other
 bog-dominated regions.
description: Files could be opened using simple "office" software.
 Data format is .xlsx. Column names are explained in README.txt
DOI: 10.5061/dryad.9s4mw6mn5
title: Does pre-spawning catch and release angling affect offspring telomere dynamics in Atlantic salmon

description: The practice of ‘catch and release’ (C&R) angling confers a
 balance between animal welfare, conservation efforts and preserving the
 socio-economic interests of recreational angling. However, C&R
 angling can still cause exhaustion and physical injury, and often exposes
 the captured fish to the stress of air exposure. Therefore, the true
 conservation success of C&R angling depends on whether the angled
 individuals then survive to reproduction and whether there are any
 persisting effects on subsequent generations. Here we tested the
 hypothesis that the stress of C&R angling is then passed on to
 offspring. We experimentally manipulated the C&R experience of
 wild adult salmon prior to the spawning season. These parental fish either
 underwent a C&R simulation (which involved exercise with/without
 air exposure) or were left as control individuals. We then measured the
 telomere length of the arising offspring (at the larval stage of
 development) since previous studies have linked a shorter telomere length
 with reduced fitness/longevity and the rate of telomere loss is thought to
 be influenced by stress. Family-level telomere length was positively
 related to rate of growth. However, the telomere lengths of the salmon
 offspring were unrelated to the C&R experience of their parents.
 This may be due to there being no intergenerational effect of parental
 stress exposure on offspring telomeres, or to any potential effects being
 buffered by the significant telomere elongation mechanisms that are
 thought to occur during the embryonic and larval stages of development.
 While this may suggest that C&R angling has a minimal
 intergenerational effect on offspring fitness, there have been numerous
 other reports of negative C&R effects, therefore we should still
 be aiming to mitigate and refine such practices, in order to minimise
 their impacts on fish populations.
description: Please refer to methods section of the article "Does
 pre-spawning catch and release angling affect offspring telomere dynamics
 in Atlantic salmon"
description: Microsoft Excel
DOI: 10.5061/dryad.9w0vt4bm4
title: Activity measures for African Pygmy mice in response to dim and bright light

description: Rodents are integral components of ecosystems as they provide several
 important ecosystem services. Despite their importance as prey,
 pollinators and seed distributors, African rodents are largely
 understudied. The effect of anthropogenic changes such as artificial light
 at night extend past urban areas to peri-urban and rural habitats and can
 have profound effects on entire ecosystems. We investigated the effect of
 dim light at night (dLAN) on the locomotor activity rhythms of the African
 pygmy mouse (Mus minutoides). Pygmy mice showed a dramatic, intensity
 dependent reduction in their locomotor activity when subjected to dLAN,
 which was accompanied by a delay in the activity onset. We also considered
 masking responses with a dark pulse during the day and a light pulse at
 night. All animals became inactive in response to a light pulse during the
 night, whereas approximately half of the animals showed activity during a
 dark pulse in the day. Our results suggest that the African pygmy mouse is
 highly sensitive to light and that their activity is strongly masked by
 light. In their natural environment, vegetation could shield pygmy mice
 against high light levels, however other anthropogenic disturbances can
 affect the behaviour of these animals and could affect their survival.
DOI: 10.5066/p17vawpg
title: Temporal environmental DNA data collected from waters in Florida, Idaho, Montana and Wisconsin in 2022

description: This dataset contains quantitative results of environmental DNA water samples from a diverse set of aquatic habitats, including small creeks in Idaho and Montana, a large river in Wisconsin, and an experimental pond in Florida. The frequency of daily sampling was randomly assigned, without duplication, each week to one of four levels: one survey event per day, two survey events per day every 6 hr, three survey events per day every 4 hr, and four survey events per day every 3 hr.
DOI: 10.5061/dryad.6m905qg4k
title: Data from: Interactions between fitness components across the life cycle constrain competitor coexistence

description: Numerous mechanisms can promote competitor coexistence. Yet, these
 mechanisms are often considered in isolation of one another. Consequently,
 whether multiple mechanisms shaping coexistence combine to promote or
 constrain species coexistence remains an open
 question.  Here, we aim to understand how multiple
 mechanisms interact within and between life stages to determine
 frequency-dependent population growth, which has a key role stabilizing
 local competitor coexistence. We conducted field experiments in three
 lakes manipulating relative frequencies of
 two Enallagma damselfly species to evaluate demographic
 contributions of three mechanisms affecting different fitness components
 across the life cycle: the effect of resource competition on individual
 growth rate, predation shaping mortality rates, and mating harassment
 determining fecundity. We then used a demographic model that incorporates
 carry-over effects between life stages to decompose the relative effect of
 each fitness component generating frequency-dependent population
 growth. This decomposition showed that fitness components
 combined to increase population growth rates for one species when rare,
 but they combined to decrease population growth rates for the
 other species when rare, leading to predicted exclusion in most
 lakes. Because interactions between fitness components within and
 between life stages vary among populations, these results show that local
 coexistence is population specific. Moreover, we show that multiple
 mechanisms do not necessarily increase competitor coexistence, as they can
 also combine to yield exclusion. Identifying coexistence mechanisms in
 other systems will require greater focus on determining contributions of
 different fitness components across the life cycle shaping competitor
 coexistence in a way that captures the potential for population level
 variation.
DOI: 10.5061/dryad.5x69p8d7z
title: Vocal performance increases rapidly during the dawn chorus in Adelaide’s warbler

description: Many songbirds sing intensely during the early morning, resulting in a
 phenomenon known as the dawn chorus. We tested the hypothesis that male
 Adelaide’s warblers (Setophaga adelaidae) warm up their voices during the
 dawn chorus. If warming up the voice is one of the functions of the dawn
 chorus, we predicted that vocal performance would increase more rapidly
 during the dawn chorus compared to the rest of the morning and that high
 song rates during the dawn chorus period contribute to the increase in
 vocal performance. The performance metrics recovery time, voiced frequency
 modulation, and unvoiced frequency modulation were low when birds first
 began singing, increased rapidly during the dawn chorus, and then leveled
 off or gradually diminished after dawn. These changes are attributable to
 increasing performance within song types. Reduction in the duration of the
 silent gap between notes is the primary driver of improved performance
 during the dawn chorus. Simulations indicated that singing at a high rate
 during the dawn chorus period increases performance in two of the three
 performance measures (recovery time and unvoiced frequency modulation)
 relative to singing at a low rate during this period. These findings are
 consistent with the hypothesis that vocal warm-up is one benefit of
 participation in the dawn chorus.
DOI: 10.15468/dl.a3ca42
title: Occurrence Download

description: A dataset containing 2873197528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2873197528 records from 55949 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003314-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu3t79
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016340-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15482830
title: Bibliografía micológica de Chile

description: Formato:

Zotero RDF.

Changelog:



v1.0.0: 1038 referencias (2025-05-21).
DOI: 10.5281/zenodo.15499878
title: Bibliografía micológica de Chile

description: Formato:

Zotero RDF.

Changelog:



v1.0.1: 1078 referencias (2025-05-23).

v1.0.0: 1038 referencias (2025-05-21).
DOI: 10.5281/zenodo.15507299
title: Bibliografía micológica de Chile

description: Formato:

Zotero RDF.

Changelog:



v1.0.3: 1142 referencias.

v1.0.2: 1104 referencias.

v1.0.1: 1078 referencias.

v1.0.0: 1038 referencias.
DOI: 10.5281/zenodo.15580041
title: Bibliografía micológica de Chile

description: Formato:

Zotero RDF.

Changelog:



v1.0.3: 1142 referencias.

v1.0.2: 1104 referencias.

v1.0.1: 1078 referencias.

v1.0.0: 1038 referencias.
DOI: 10.15468/dl.rbb22p
title: Occurrence Download

description: A dataset containing 65827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mycobacterium Lehmann & Neumann, 1896"
 ]
}

 The dataset includes 65827 records from 508 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016434-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.