cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.12196911
title: Supplemental Material for Yang et al., 2020

description: Circular RNA (circRNA) is a covalently-closed single-stranded RNA molecule that plays an important role in transcriptional regulation of gene expression in a variety of species. Light intensity is a pivotal environmental factor affecting plant growth and development. However, little is known regarding photoresponsive plant circRNAs. Here, we aimed to investigate the expression and function of circRNAs in lettuce leaves in response to different light intensity treatments. We performed RNA sequencing (RNA-Seq) on leaves of lettuce (<i>Lactuca sativa</i>) to determine circRNA expression profiles and reverse-transcription polymerase chain reaction (PCR) to validate the candidate circRNA molecules. We then combined bioinformatics approach to explore the function of the parental genes of circRNA, including network, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes pathway analysis. We identified 1650 circRNAs in lettuce, of which 1508 (86.40%) were derived from exons. Using real-time PCR, we characterized 10 validated differentially expressed circRNAs and their parental genes, all of which showed expression patterns consistent with RNA-Seq data. Interestingly, the expression of circRNA was, in some cases, inversely correlated with the expression of the parental gene. Furthermore, analysis of the circRNA–microRNA–mRNA network suggests that circRNAs may be involved in plant hormone signaling and chlorophyll metabolism during photoreactivity. These findings provide an essential reference basis for studying circRNAs’ biological mechanisms in light-treated plants.
DOI: 10.15784/601320
title: Earthquake Sequence Dynamics at the Interface Between an Elastic Layer and Underlying Half-Space in Antiplane Shear

description: We quantify sliding stability and rupture styles for a horizontal interface between an elastic layer and stiffer elastic half-space with a free surface on top and rate-and-state friction on the interface. Specific motivation (and model parameters) comes from quasi-periodic slow slip events on the Whillans Ice Plain in West Antarctica. We quantify the influence of layer thickness on sliding stability, specifically whether steady loading of the system produces steady sliding or sequences of stick-slip events. This dataset contains input files from different parts of parameter space to demonstrate different styles of slip (steady sliding, slow slip sequences, and fast slip sequences).
DOI: 10.25387/g3.12196911.v1
title: Supplemental Material for Yang et al., 2020

description: Circular RNA (circRNA) is a covalently-closed single-stranded RNA molecule that plays an important role in transcriptional regulation of gene expression in a variety of species. Light intensity is a pivotal environmental factor affecting plant growth and development. However, little is known regarding photoresponsive plant circRNAs. Here, we aimed to investigate the expression and function of circRNAs in lettuce leaves in response to different light intensity treatments. We performed RNA sequencing (RNA-Seq) on leaves of lettuce (<i>Lactuca sativa</i>) to determine circRNA expression profiles and reverse-transcription polymerase chain reaction (PCR) to validate the candidate circRNA molecules. We then combined bioinformatics approach to explore the function of the parental genes of circRNA, including network, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes pathway analysis. We identified 1650 circRNAs in lettuce, of which 1508 (86.40%) were derived from exons. Using real-time PCR, we characterized 10 validated differentially expressed circRNAs and their parental genes, all of which showed expression patterns consistent with RNA-Seq data. Interestingly, the expression of circRNA was, in some cases, inversely correlated with the expression of the parental gene. Furthermore, analysis of the circRNA–microRNA–mRNA network suggests that circRNAs may be involved in plant hormone signaling and chlorophyll metabolism during photoreactivity. These findings provide an essential reference basis for studying circRNAs’ biological mechanisms in light-treated plants.
DOI: 10.17632/4y48dvzwdp.1
title: The effect of exposure to fiction on attributional complexity, egocentric bias and accuracy in social perception

description: dataset
DOI: 10.17632/9b4d8g9jc4.2
title: 3D printed receptacle with diffuser membrane for manipulating pressurized air and water

description: Water research is one of many fields where FDM 3D printing offers the freedom of customization and the inclusion of commercial components. We present our 330 mL 3D printed laboratory receptacle that has been customized to control pressurized air and water in one body. During our tests, water has been stored without loss, and batches froze whilst circulating and diffusing air through the liquid. The device has been parameterized with the slicer software and gcode editing, letting the FDM printer to build a diffuser membrane surrounded by air-tight walls. Detailed construction instructions are given, including piping and control board for operation. According to the functionality of the receptacle and the aeration system, the solutions have been found durable and low-cost. Disadvantages are the time invested in creating customized code, and certain limitations of the membrane itself.
DOI: 10.17632/jr4drtrtn4.2
title: Supplementary Material for Cosine tuning determines plantar flexors’ activities during human upright standing and is affected by incomplete spinal cord injury by Fok et al.

description: Supplementary Material for Cosine tuning determines plantar flexors’ activities during human upright standing and is affected by incomplete spinal cord injury by Fok et al. This file contains Figure S1.
DOI: 10.17632/cbsgy5hc4d.1
title: Data for an air and ground ambulance location-allocation-routing problem to design a temporary emergency management system after a disaster

description: The characteristics of parameters for randomly generated test problems of a location-helicopter ambulance allocation-ambulance routing problem with multi-medical servers for designing a temporary emergency management system in a disaster time
DOI: 10.17632/cbsgy5hc4d.2
title: Data for an air and ground ambulance location-allocation-routing problem to design a temporary emergency management system after a disaster

description: The characteristics of parameters for randomly generated test problems of a location-helicopter ambulance allocation-ambulance routing problem with multi-medical servers for designing a temporary emergency management system in a disaster time
DOI: 10.17632/cyn56d456r.1
title: Non-Invasive Survey Technology for Estimating the Distribution of Oxidant Solution: A Pilot Injection Study

description: Tables and Figures and Data of this manuscript
DOI: 10.17632/rvvk4z87nd.2
title: Results Unified Formulation Paper Part II

description: The results for the unified formulation of a quasi-2D family of elements based on global-local superposition hypothesis are stored in this repository. The raw data is in format of .dat files and the processed data is stored in the .xlsm files for each configuration described in related published paper. The structure of the folders and name of the files are in accordance with the notation used in the related paper. The .dat files named 2D are suitable to be used in TECPLOT9 and the files named BRICK are 3D representations of the relative 2D and are suitable also for VISIT 3.1.0.
DOI: 10.17632/vrjd6vdk8b.2
title: Results Unified Formulation Paper Part I

description: The two-elements validation results for the unified formulation of a quasi-2D family of elements based on global-local superposition hypothesis are stored in this repository. The raw data is in format of .dat files and the processed data is stored in the .xlsm files for each configuration described in related published paper. The superposition results were generated using a element with parabolic interpolation for u and w in z direction, linear interpolation for u and cubic interpolation for w in x direction. The .dat files named 2D are suitable to be opened in TECPLOT9 software.
DOI: 10.5255/ukda-sn-854114
title: Population receptive field tuning properties of visual cortex during childhood 2016-2019
DOI: 10.17632/bmdkndv2t6.1
title: Proposal of a New Classification of Segmental Vitiligo and Evaluation of Its Clinical Courses: A Retrospective Review of 956 Patients

description: eFigure 1. Two distribution patterns of segmental vitiligo classified into T1-NM (neck and midline trunk) (A, B) Representative clinical photographs and schematic picture showing a horizontally spreading pattern on the neck. (C, D) Representative clinical photographs and schematic picture showing vertically linear shape at the neck and midline trunk.
DOI: 10.17632/pvdh4h72fw.3
title: Clinical Evidence for the Efficacy of Acupuncture on Herpes Zoster in China: A Systematic Review and Meta-Analysis

description: Supplementary materials of included studies
DOI: 10.17632/xynvvrjvrv.1
title: Ten million 3-by-3 strategic games, with Nash Equilibria and Perfectly Transparent Equilibrium pre-computed

description: The games were automatically generated by taking random payoff permutations on the integers 0-8 for each game and agent. It is thus a simple random sample with replacement. The game matrix is in field y. The Nash equilibrium (field N) and the Perfectly Transparent Equilibrium (field P) are pre-computed. Important: the equilibrium fields contain the coordinates (starting at 0) of the equilibria in the matrix in field y, not the payoffs. There are 800 files, so that it is easy for consumers to only work on a subset to get a smaller sample.
DOI: 10.5519/qd.8czj03lp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (165 records)
DOI: 10.17632/3b33wkk3jg.1
title: Impact of Italian Score for Organ Allocation System on Deceased Donor Liver Transplantation: A Monocentric Competing Risk Time-to-Event Analysis

description: Raw data for the article: Impact of Italian Score for Organ Allocation System on Deceased Donor Liver Transplantation: A Monocentric Competing Risk Time-to-Event Analysis
DOI: 10.5519/qd.isra3tti
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10 records)
DOI: 10.17632/787swd6psb.1
title: Data for: Enhanced Recovery after Implementation of Surgery Protocol in Living Kidney Donors: The ISMETT Experience

description: Raw data for the article: Enhanced Recovery after Implementation of Surgery Protocol in Living Kidney Donors: The ISMETT Experience
DOI: 10.17632/hrdycfbm4m.3
title: Calibration/validation time-period selection in hydrologic models leads to uncertainty in water balance simulations

description: The temporal split-sample approach is the most common method to allocate observed data into calibration and validation groups for hydrologic model calibration. Often, calibration and validation data are split 50:50, where a hydrologic model is calibrated using the first half of the observed data and the second half is used for model validation. However, there is no standard strategy for how to split the data. This may result in different distributions in the observed hydrologic variable (e.g., wetter conditions in one half compared to the other) that could affect simulation results. We investigated this uncertainty by calibrating Soil and Water Assessment Tool hydrologic models with observed streamflow for three watersheds within the United States. We used six temporal data calibration/validation splitting strategies for each watershed (33:67, 50:50, and 67:33 with the calibration period occurring first, then the same three with the validation period occurring first). We found that the choice of split could have a large enough impact to alter conclusions about model performance. Through different calibrations of parameter sets, the choice of data splitting strategy also led to different simulations of streamflow, snowmelt, evapotranspiration, soil water storage, surface runoff, and groundwater flow. The impact of this research is an improved understanding of uncertainties caused by the temporal split-sample approach and the need to carefully consider calibration and validation periods for hydrologic modeling to minimize uncertainties during its use. The files "Research_Data_for_Myers_et_al.tar.gz" and "Research_Data_for_Myers_et_al.zip" include the water balances and observed data from the study.
DOI: 10.17632/sc3yvxp9h6.1
title: Using economic value added to assess the investment attractiveness of Russian companies

description: DATA used for my master paper
DOI: 10.17632/t5yttrn9d5.1
title: Data for: Epidemiology and successful containment of a carbapenem-resistant Enterobacteriaceae outbreak in a Southern Italian Transplant Institute

description: Raw data for the article: Epidemiology and successful containment of a carbapenem-resistant Enterobacteriaceae outbreak in a Southern Italian Transplant Institute.
DOI: 10.17632/8pxpztp828.2
title: Designing of payload carrying quad-copter by numerical and F.E.A. method

description: it contains all files used to develope the data present in the manuscript 1. python code file for defomation, weight and stress calculation 2. Mathcad sheets 3. solidworks 3d model excel sheet for graphs
DOI: 10.17632/tgw4b27kbv.1
title: Data for: A paradigm shift in the intention-to-transplant children with biliary atresia

description: Raw data for the article: A paradigm shift in the intention-to-transplant children with biliary atresia
DOI: 10.17632/kpjd8tbyt2.1
title: Data for: Acute rejection after lung transplantation: association between histopathological and CT findings

description: Raw data for the article: Acute rejection after lung transplantation: association between histopathological and CT findings
DOI: 10.17632/sc5tfwt4nr.1
title: Modulation of KDM1A with vafidemstat rescues memory deficit and behavioral alterations

description: Data corresponding to Fig 1 to Fig 11 Data corresponding to S1 Fig to S6 Fig Data corresponding to S Fig Reply to reviewers
DOI: 10.17632/tmrs92j7pv.1
title: COVID-19: Time Series Datasets India versus World

description: This dataset consists of COVID-19 time series data of India since 24th March 2020. The data set is for all the States and Union Territories of India and is divided into five parts, including i) Confirmed cases; ii) Death Count; iii) Recovered Cases; iv) Temperature of that place; and v) Percentage humidity in the region. The data set also provides basic details of confirmed cases and death count for all the countries of the world updated daily since 30 January 2020. The end user can contact the corresponding author for more details.
DOI: 10.17632/w7sw8njrz5.1
title: Heat recovery optimzation

description: Optimization of heat recovery systems
DOI: 10.25592/uhhfdm.947
title: Data for: Differential effects of the temporal and spatial distribution of audiovisual stimuli on cross-modal spatial recalibration

description: This file contains the raw data associated with the study "Differential effects of the temporal and spatial distribution of audiovisual stimuli on cross-modal spatial recalibration" by Patrick Bruns, Hubert R. Dinse, and Brigitte Röder. The study has been accepted for publication in the European Journal of Neuroscience.
DOI: 10.25592/uhhfdm.948
title: Data for: Differential effects of the temporal and spatial distribution of audiovisual stimuli on cross-modal spatial recalibration

description: This file contains the raw data associated with the study "Differential effects of the temporal and spatial distribution of audiovisual stimuli on cross-modal spatial recalibration" by Patrick Bruns, Hubert R. Dinse, and Brigitte Röder. The study has been accepted for publication in the European Journal of Neuroscience.
DOI: 10.15468/2hzvkh
title: The rose chafers (Coleoptera: Scarabaeidae: Cetoniinae) of Angola: a descriptive checklist with new records and synonymic notes

description: This dataset contains the digitized treatments in Plazi based on the original journal article Serrano, Artur R. M., Capela, Rúben A., Nunes, Telmo, Santos, Carmen Van-Dú- Nem Neto (2020): The rose chafers (Coleoptera: Scarabaeidae: Cetoniinae) of Angola: a descriptive checklist with new records and synonymic notes. Zootaxa 4776 (1): 1-130, DOI: https://doi.org/10.11646/zootaxa.4776.1.1
DOI: 10.17632/52pb755m95.1
title: Data for: Crucial Role of Extended Criteria Donors in Deceased Donor Single Kidney Transplantation to Face Chronic Shortage in the Heart of the Mediterranean Basin: A Single-Center Experience

description: Raw data for the article: Crucial Role of Extended Criteria Donors in Deceased Donor Single Kidney Transplantation to Face Chronic Shortage in the Heart of the Mediterranean Basin: A Single-Center Experience
DOI: 10.17632/7twscy4p8m.1
title: PROMIS Pediatric Sleep Assessment tools

description: Specific items included in Patient-Reported Outcomes Measurement Information System (PROMIS) pediatric parent-proxy short forms used to assess sleep disturbance and sleep-related impairment in pediatric atopic dermatitis patients
DOI: 10.17632/vgbnzm4rts.1
title: When did the Lhasa and Qiantang Terranes “divorce”: Constraints from Middle-Late Triassic Alkaline Trachytic Lavas

description: Data accompanying "When did the Lhasa and Qiantang Terranes “divorce”: Constraints from Middle-Late Triassic Alkaline Trachytic Lavas" by Yang Song, Haifeng Li, Carl Guilmette, Ming Zheng, Douwe J.J. van Hinsbergen, Zhenyu Li, Faqiao Li. Tectonics, 2020
DOI: 10.5281/zenodo.3821966
title: Model data(Figures 4 and S1)

description: 2.5-layer model data used to generate Figures 4 and S1.
DOI: 10.5281/zenodo.3821967
title: Model data(Figures 4 and S1)

description: 2.5-layer model data used to generate Figures 4 and S1.
DOI: 10.17632/43h7zzp67k.1
title: ThielViewer - an interactive visualization tool for: Do emergency ventilators deliver preset tidal volumes? - Mechanical ventilation in a human cadaver model of asynchronous cardiopulmonary resuscitation.

description: This repository contains a compiled software tool to process and review respiratory data from CSV files on Windows operating systems. It was written for a raw dataset [1] obtained in a study of simulated CPR in Thiel-embalmed cadavers [research paper - coming soon]. The tool visualizes measured flow, airway pressure and esophageal pressure. Additionally, it derives and plots volumes, as well as transpulmonary pressure, as described in the accompanying data publication [data publication - coming soon]. To improve orientation, the program can highlight segments of the study protocol within the tracings. The plots are fully interactive, can be rescaled, zoomed in, and panned back and forth.
DOI: 10.17632/k2545gv8s9.1
title: Auditory sequence perception in common marmosets (Callithrix jacchus)Behav Processes. 2019 May;162:55-63. doi: 10.1016/j.beproc.2019.01.014.

description: Two marmosets (Cj190 and Cj195) were trained to discriminate auditory patterns to test whether they are sensitive to the regularity of auditory patterns. For this purpose, three experiments were conducted using simple Morse-code like patterns. In Experiment 1, stimuli were consisted of the combination of two properties (i.e., frequency and inter-tone interval). Both marmosets could choose S+ out of four sound trains as indicated by the increment of HIT responses (‘1’ in the S+ trials) and decrement of FA response (‘1’ in the S- trials). Thus, the marmosets’ ability to recognize physical properties of sounds was showed. In Experiment 2, stimulus patterns were ABAB and AABB patterns. However, the marmosets could not discriminate these patterns although the results of Experiment 1 showed that the marmosets can notice the difference between A and B elements. Such results were indicated by the comparable HIT and FA ratios across sessions. Thus, the results of Experiment 2 implied that marmosets are not sensitive to the ordering regularity of sounds. In the phase 1 of Experiment 3, ABAB and AABB patterns in which either frequency or tone duration properties were shared were presented. Consequently, the marmoset learned to avoid two S- stimuli that did not share the common physical properties with S+ as indicated by the marked decrement of FA ratios to two of three S- stimuli. However, their discrimination performance did not rely on the ordering features. In the phase 2 of Experiment 3, training was continued using S+ and S- that the marmosets could not inhibit responding. Notably, FA to such S- was not inhibited. Consequently, they could not discriminate ABAB and AABB patterns. In conclusion, the current experiments imply that the marmosets can recognize physical features of sound. However, they cannot process the order information of auditory signals.
DOI: 10.17632/xynvvrjvrv.2
title: Ten million 3-by-3 strategic games, with Nash Equilibria and Perfectly Transparent Equilibrium pre-computed

description: The games were automatically generated by taking random payoff permutations on the integers 0-8 for each game and agent. It is thus a simple random sample with replacement. The game matrix is in field y. The Nash equilibrium (field N) and the Perfectly Transparent Equilibrium (field P) are pre-computed. Important: the equilibrium fields contain the coordinates (starting at 0) of the equilibria in the matrix in field y, not the payoffs. There are 800 files, so that it is easy for consumers to only work on a subset to get a smaller sample.
DOI: 10.5255/ukda-sn-852507
title: Provenance of social media: survey data, 2016
DOI: 10.15468/vrngrn
title: Kryptonesticus deelemanae gen. et sp. nov. (Araneae, Nesticidae), with notes on the Mediterranean cave species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pavlek, Martina, Ribera, Carles (2017): Kryptonesticus deelemanae gen. et sp. nov. (Araneae, Nesticidae), with notes on the Mediterranean cave species. European Journal of Taxonomy 262: 1-27, DOI: http://dx.doi.org/10.5852/ejt.2017.262
DOI: 10.5281/zenodo.3822299
title: All-atom 500-nano seconds Molecular Dynamics Simulations of SARS-CoV-2 Spike Receptor-binding Domain bound with ACE2

description: Data includes all of the trajectories (1000) of classical all-atom molecular dynamics (MD) simulations of of SARS-CoV2 Spike Protein/ACE2 complex (PDB ID: 6M0J). In order to decrease the size of the file only protein rajectories were provided. Simulation has been performed with Desmond. Protein was placed in the cubic boxes with explicit TIP3P water models that have 10.0 Å thickness from surfaces of protein. The system is neutralized by adding counter ions, and salt solution of 0.15M NaCl was also used to adjust the concentration of the systems. The long-range electrostatic interactions were calculated by the particle mesh Ewald method. A cutoff radius of 9.0 Å was used for both van der Waals and Coulombic interactions. The temperature was set as 310K initially, and Nose–Hoover thermostat was used for adjustment. Martyna–Tobias–Klein protocol was employed to control the pressure, which was set at 1.01325 bar. The time-step was assigned as 2.0 fs. The default values were used for minimization and equilibration steps, and finally 500 nano-seconds (ns) production run was performed for the simulation.
description: for more information: durdagilab.com; serdardurdagi@gmail.com