cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/16a64ff2df54ddc021f8f1f15dec8950
title: Legacies of Historical Clearcutting, Wind and Salvage Logging in Pisgah State Forest 2016

description: Disturbance events affect forest composition and structure across a range of spatial and temporal scales, and subsequent forest development may differ after natural, anthropogenic, or compound disturbances. Following large, natural disturbances, salvage logging is a common and often controversial management practice in many regions of the globe. Yet, while the short-term impacts of salvage logging have been studied in many systems, the long-term effects remain unclear. We capitalized on over eighty years of data following an old-growth Tsuga canadensis-Pinus strobus forest in southwestern New Hampshire, USA after the 1938 hurricane, which severely damaged forests across much of New England. To our knowledge, this study provides the longest evaluation of salvage logging impacts, and it highlights developmental trajectories for Tsuga canadensis-Pinus strobus forests under a variety of disturbance histories. Specifically, we examined development from an old-growth condition in 1930 through 2016 across three different disturbance histories: (1) clearcut logging prior to the 1938 hurricane with some subsequent damage by the hurricane (“logged”), (2) severe damage from the 1938 hurricane (“hurricane”), and (3) severe damage from the hurricane followed by salvage logging (“salvaged”). At each site, 2-4 0.05 ha plots were established, and DBH, species, and distance and direction from plot center were recorded for each tree over 10 cm DBH. Stumps and snags were also measured. From the site center, coarse woody material was measured along three 34-m transects using the line-intersect method. Finally, a 1-ha plot was established around the site center, within which all pit-and-mound structures and stumps were recorded as well as boles associated with these structures.
DOI: 10.5061/dryad.h7g27vc/4
title: https://github.com/kakearney/boundedline-pkg/blob/master/boundedline/boundedline.m

description: Code for plotting bounded shaded lines.
DOI: 10.18434/m32064
title: pyMCR: A Python Library for Multivariate Curve Resolution Analysis.

description: pyMCR is an open-source software library for performing multivariate curve resolution (MCR) analysis with an alternating regression scheme (MCR-AR). MCR is a chemometric method for elucidating signatures of analytes and their relative abundance from a series of mixture measurements, without any knowledge of these values a priori. This software library, written in Python, enables users to perform MCR analysis with their choice of constraints, regressors, and error functions to minimize. Further, users can apply different constraints and regressors for signature and abundance calculations. Finally, this library enables users to develop their own constraints, regressors, and error functions or import them from existing libraries.
DOI: 10.5281/zenodo.2658457
title: Dataset AEROARMS - Perception for robot operation

description: <strong>Dataset description: </strong>This dataset contains the images used for validating the perception algorithms to support aerial and ground robot operations.

<strong>Data description:</strong> The images where obtained using an Intel Realsense d435 camera. Additionally, the calibration of the camera is given in XML format.

<strong>Dataset size: </strong>72.8Mb
DOI: 10.5281/zenodo.2658458
title: Dataset AEROARMS - Perception for robot operation

description: <strong>Dataset description: </strong>This dataset contains the images used for validating the perception algorithms to support aerial and ground robot operations.

<strong>Data description:</strong> The images where obtained using an Intel Realsense d435 camera. Additionally, the calibration of the camera is given in XML format.

<strong>Dataset size: </strong>72.6Mb
DOI: 10.14469/hpc/5597
title: Scifinder Workshop 02.05.2019

description: What we will cover in this session 1. What is SciFinder and why should I use it 2. How to find relevant literature references using keyword terms 3. The use of refine and analyse options to add focus to searches 4. The most effective way of searching for specific substances 5. Exploring the information relating to substances 6. Searching substances by structure – what do we retrieve and why 7. Creating generic searches to broaden our scope 8. Finding suitable reactions for the synthesis of substances or their use as reactants
DOI: 10.18430/m36ogj
title: X-ray diffraction data for the meCP2 MBD in complex with DNA (6OGJ)
DOI: 10.18430/m36ona
title: X-ray diffraction data for the crystal structure of Influenza hemagglutinin from strain A/Hickox/JY2/1940 (6ONA)
DOI: 10.18430/m36onn
title: X-ray diffraction data for the crystal structure of 8-amino-7-oxononanoate synthase from Burkholderia phymatum (6ONN)
DOI: 10.5281/zenodo.2657423
title: Raw and processed anomalous diffraction data for crystals of metal-free R2lox soaked with Mn, Fe and Co or Zn

description: Raw and processed anomalous diffraction data for crystals of metal-free <em>Geobacillus kaustophilus</em> R2-like ligand-binding oxidase (R2lox) soaked with 5 mM each MnCl<sub>2</sub>, (NH<sub>4</sub>)<sub>2</sub>Fe(SO<sub>4</sub>)<sub>2</sub> and CoCl<sub>2</sub> or ZnCl<sub>2</sub>. Data were collected on two crystals each after soaking with Mn, Fe and Co or Mn, Fe and Zn, respectively. For each crystal, one dataset each was collected at the Fe K edge (7162 eV), Mn K edge (6589 eV) and Co K edge (7721 eV) or Zn K edge (9664 eV; X-ray energies corresponding to the theoretical K edge + 50 eV). Data were collected at 100 K on a Pilatus 6M detector at beamline X06SA of the Swiss Light Source (SLS, Villigen, Switzerland) on September 23, 2012, and processed with XDS and XSCALE. All raw and processed diffraction data for each crystal are compressed into one file.
description: We thank Matthew D. Bennett and the staff at beamline X06SA/SLS for assistance with X-ray data collection. Financial support was provided by the Swedish Research Council (2016-03770 to J.J.G. and 2017-04018 to M.H.), the  European Research Council (HIGH-GEAR 724394), the Knut and Alice Wallenberg Foundation (2012.0233 and 2017.0275), and the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement n.°283570 (for BioStruct-X) (M.H.).
DOI: 10.5281/zenodo.2657424
title: Raw and processed anomalous diffraction data for crystals of metal-free R2lox soaked with Mn, Fe and Co or Zn

description: Raw and processed anomalous diffraction data for crystals of metal-free <em>Geobacillus kaustophilus</em> R2-like ligand-binding oxidase (R2lox) soaked with 5 mM each MnCl<sub>2</sub>, (NH<sub>4</sub>)<sub>2</sub>Fe(SO<sub>4</sub>)<sub>2</sub> and CoCl<sub>2</sub> or ZnCl<sub>2</sub>. Data were collected on two crystals each after soaking with Mn, Fe and Co or Mn, Fe and Zn, respectively. For each crystal, one dataset each was collected at the Fe K edge (7162 eV), Mn K edge (6589 eV) and Co K edge (7721 eV) or Zn K edge (9664 eV; X-ray energies corresponding to the theoretical K edge + 50 eV). Data were collected at 100 K on a Pilatus 6M detector at beamline X06SA of the Swiss Light Source (SLS, Villigen, Switzerland) on September 23, 2012, and processed with XDS and XSCALE. All raw and processed diffraction data for each crystal are compressed into one file.
description: We thank Matthew D. Bennett and the staff at beamline X06SA/SLS for assistance with X-ray data collection. Financial support was provided by the Swedish Research Council (2016-03770 to J.J.G. and 2017-04018 to M.H.), the  European Research Council (HIGH-GEAR 724394), the Knut and Alice Wallenberg Foundation (2012.0233 and 2017.0275), and the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement n.°283570 (for BioStruct-X) (M.H.).
DOI: 10.18430/m36ogk
title: X-ray diffraction data for the meCP2 MBD in complex with DNA (6OGK)
DOI: 10.5281/zenodo.2627323
title: Microfluidic solvent extraction of poly(vinyl alcohol) droplets: effect of polymer structure on particle and capsule formation

description: Raw data from the majority of figures of our 2018 Soft Matter Paper:

Selected datasets from figures are excluded, owing to them being transformations of the raw data provided in the same figure.
DOI: 10.5281/zenodo.2627324
title: Microfluidic solvent extraction of poly(vinyl alcohol) droplets: effect of polymer structure on particle and capsule formation

description: Raw data from the majority of figures of our 2018 Soft Matter Paper:

Selected datasets from figures are excluded, owing to them being transformations of the raw data provided in the same figure.
DOI: 10.17632/w6r7ydt7gj.1
title: Data for: Using the terrestrial laser scanning technique for aeolian sediment transport assessment in the coastal zone in seasonal scale

description: Coastal dynamics were estimated based on the sand budget (ratio between the erosion and accumulation at the key sites). During the monitoring (autumn 2014 – spring 2016), six scanning sessions were conducted at the km 14 site and five sessions at the km 42 site to estimate erosion processes in different seasons.The TLS-aided computation of the volume of sand materials employs combined calculations. The volume of losses and depositional gains is computed for each cell. One of the object’s states is assumed as the vertical datum.
DOI: 10.5066/p9h5t2mv
title: Toxicokinetics of imidacloprid-coated wheat seeds in Japanese quail (Coturnix coturnix) and an assessment of risk

description: - Observations of test subjects, - Body weight, organ/tissue weights - Biomarker data (oxidative DNA damage, thyroid hormones, corticosterone, gene expression) in various tissues - Residues as percent of administered dose - Tissues to plasma rations - Metabolites and ratios - Elimination half-lives
DOI: 10.5066/p999473n
title: In ovo exposure to brominated flame retardants Part II: Assessment of effects of TBBPA-BDBPE and BTBPE on hatching success, morphometric and physiological endpoints in American kestrels

description: - Observations of test subjects and hatching data - Body weight, organ/tissue weights - Biomarker data (oxidative stress indicators, oxidative DNA damage, thyroid hormones, histological findings) in various tissues - Chemical residues in tissues
DOI: 10.5285/82771e90-65d6-4f56-b766-a16fe099fc98
title: Fluorescent sediment profile images (fSPI) for replicate macrofaunal communities from the Western Barents Sea for summer 2017 and 2018

description: Images of the macrofaunal mediated redistribution of optically distinct particulate tracers (luminophores) for intact communities from the western Barents Sea after 12 days incubation. Images of all four sides of each aquarium are taken using a digital SLR camera housed within a UV illuminated imaging box. Data were collected on cruises JR16006 and JR17007. Funding was provided by 'The Changing Arctic Ocean Seafloor (ChAOS) - how changing sea ice conditions impact biological communities, biogeochemical processes and ecosystems' project (NE/N015894/1 and NE/P006426/1, 2017-2021), part of the NERC funded Changing Arctic Ocean programme.
description: Data were collected from each of 5 stations in 2017 (B13-B17) and 6 stations in 2018 (B13-B17 and Xs) during two consecutive cruises (RRS James Clark Ross: JR16006, 30th June to 8th August, 2017; JR17007: 10th July to 5th August, 2018) following a transect along the 30°E meridian. At each station four replicate intact sediment cores (LWH: 20 x 20 x 12 cm) were obtained from replicate 0.1m2 USNL (Unites States Naval Laboratory) box cores using a core extruder, transferred to transparent acrylic aquaria (internal dimensions, LWH: 20 x 20 x 34 cm) and overlain with ~8 L (20cm depth) surface seawater (salinity, ~34). Aquaria (2017, n = 20; 2018, n = 24) were randomly transferred to one of two insulated fibreglass seawater baths (LWH: 1.2 x 1.2 x 0.8m, Tanks Direct, UK) and maintained at a representative ambient bottom temperature in the dark. Faunal mediated sediment particle reworking was estimated by establishing the redistribution of optically distinct particulate tracers (luminophores: 215g aquaria-1, fluorescent green, &lt;200µm silica sand, density 2.35 kg dm-3; Glass Pebbles Ltd., UK). Luminophores were evenly distributed across the sediment surface immediately after the partial seawater change. After 12 days, images (RGB colour, JPEG compression) of the redistribution of luminophores were taken of all four sides of each aquarium using a digital SLR camera (Canon 400D: 2017, 10 s exposure, f5.6 aperture, ISO 400, 83 µm pixel-1; 2018, 10 s exposure, f5.6 aperture, ISO 800, 74 µm pixel-1) housed within a UV illuminated imaging box. Resolution: Realised camera resolution of 83 µm pixel-1 in 2017 and 74 µm pixel-1 in 2018.
description: Instrumentation: Canon 400D digital SLR camera
description: Original unedited images provided. Image JR16006_2017_B16_aquarium3_side1.jpg not available due to unrecoverable corruption at point of transfer from camera.
DOI: 10.6073/pasta/44d78f21fbf921195da3ca6895ea7189
title: Growth data for young of the year arctic grayling raised in a aquatic common garden at Toolik Field Station, summer 2017

description: Since 2009, the FISHSCAPE  Project (Grant #1719267, 1417754, and 0902153), based at Toolik Field Station, has monitored physical, chemical, and biological parameters within three watersheds: The Kuparuk (including Toolik Lake and Toolik outlet stream); The Sagavanirktok (primarily Oksrukuyik Creek, but also including sections of the Ailish and Atigun Rivers and the Galbraith Lakes);  and The Itkillik (primarily the I-Minus outlet stream, a tributary that that feeds into the Itkilik River). The goals are to understand and predict the adaptability and persistence of a key Arctic species, the Arctic grayling (Thymallus arcticus), to changing climate and hydrology. Research questions include: (1) Does landscape structure determine movement within and among watersheds; (2) do populations adapt to stream characteristics at local and regional scales; and (3) will the relative adaptability of populations determine their persistence under future climate change.
To test ideas about local adaptation, we conducted an aquatic common garden experiment at Toolik Field Station, to investigate the genetic component of phenotypic variation among Arctic grayling populations on Alaska's North Slope.  This file contains the growth data.
DOI: 10.6073/pasta/3c127c31cef3ecbdac97ffdf86ccf026
title: Survivorship data for young of the year Arctic grayling raised in an aquatic common garden at Toolik Field Station, summer 2017

description: Since 2009, the FISHSCAPE  Project (grant #  1719267, 1417754, and 0902153), based at Toolik Field Station, has monitored physical, chemical, and biological parameters within three watersheds: The Kuparuk (including Toolik Lake and Toolik outlet stream); The Sagavanirktok (primarily Oksrukuyik Creek, but also including sections of the Ailish and Atigun Rivers and the Galbraith Lakes);  and The Itkillik (primarily the I-Minus outlet stream, a tributary that that feeds into the Itkilik River). The goals are to understand and predict the adaptability and persistence of a key Arctic species, the Arctic grayling (Thymallus arcticus), to changing climate and hydrology. Research questions include: (1) Does landscape structure determine movement within and among watersheds; (2) do populations adapt to stream characteristics at local and regional scales; and (3) will the relative adaptability of populations determine their persistence under future climate change.
To test ideas about local adaptation, we conducted an aquatic common garden experiment at Toolik Field Station, to investigate the genetic component of phenotypic variation among Arctic grayling populations on Alaska's North Slope.  This file contains the survivorship data.
DOI: 10.17632/2rwftzp27p.1
title: Data for: Does Mass Media Contribute to HIV-Awareness among Adolescents? Evidence From Uganda

description: This Stata do-file is provide for results replication and should be used with Uganda 2016 DHS data.
DOI: 10.6073/pasta/38dfd48fc143a4f5abea8aa6d664c919
title: Fish tag data remotely detected using whole stream antennas or hand held tag readers in the Kuparuk, Itkilik, and Sagavanirktok drainages near Toolik Field Station, Alaska, from 2010 to 2017

description: From 2009 to 2017, the FISHSCAPE Project (grant numbers 1719267, 1417754, and 0902153), based at Toolik Field Station, has monitored physical, chemical, and biological parameters within three watersheds: The Kuparuk (including Toolik Lake and Toolik outlet stream); The Sagavanirktok (primarily Oksrukuyik Creek, but also including sections of the Ailish and Atigun Rivers and the Galbraith Lakes); and The Itkillik (primarily the I-Minus outlet stream, a tributary that that feeds into the Itkilik River). Target species were primarily Arctic grayling and Lake trout, although Arctic char, Burbot, Dolly varden, round whitefish, and slimey sculpin were also captured. This file contains the detectioned fish tags using whole stream or hand-held antennas in the three watersheds. We had no field season in 2014 and thus did not deploy antennaes. Fish were tagged with Passive Integrated Transponder (PIT) tags which can be read with a whole stream antenna to track the migration of the fish, predominately Arctic grayling, throughout the systems. Fish tags detected with a handheld readers are designated in Site ID as "XXX_capture". For "capture" fish time is arbitraily set at '7:00:00'' of the day of capture and tagging because actual time was not recorded. The individual fish data (date, tag number, length, weight, species) associated with the tag can be found in the 2009-2017_FISHSCAPE_fish_tagging file.
DOI: 10.6073/pasta/febee98e62aaa9001e5747432ded64bd
title: Fish tagging data (length, weight, tag number) from the Kuparuk, the Sagavanirktok (primarily Oksrukuyik Creek) and the Itkillik (primarily the I-Minus outlet stream) watersheds,  2009 - 2017

description: Since 2009, the FISHSCAPE  Project (grant number  1719267, 1417754, and 0902153), based at Toolik Field Station, has monitored physical, chemical, and biological parameters within three watersheds: The Kuparuk (including Toolik Lake and Toolik outlet stream); The Sagavanirktok (primarily Oksrukuyik Creek, but also including sections of the Ailish and Atigun Rivers and the Galbraith Lakes);  and The Itkillik (primarily the I-Minus outlet stream, a tributary that that feeds into the Itkilik River).  Target species were primarily Arctic grayling and Lake trout, although Arctic char, Burbot, Dolly varden, round whitefish, and slimey sculpin were also captured.
Fish were collected on each river/lake. Coordinates and/or specific station locations were noted. All fish captured during the field season are measured, weighed, tagged  (if large enough) and released. If fish were not previously tagged, they were tagged with  Passive Integrated Transponder (PIT)  tags which  can be read with a whole stream antenna to track the migration of the fish, predminately Arctic grayling, throughout the systems.
DOI: 10.5066/p9sd3uz5
title: USGS National and Global Oil and Gas Assessment Project-Eromanga Basin Province, Australia, Cooper Basin Continuous Assessment Unit Boundaries and Input Data

description: This data release contains the boundaries of assessment units and input data for the assessment of the Eromanga Basin Province, Australia, Cooper Basin Continuous Assessment Unit Boundaries. The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown herein as a geographic boundary interpreted, defined, and mapped by the geologist responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. This data release also contains input data forms. The input data is formatted in a human-readable format used during assessment meetings and is included. Documentation for these csv files is included (Input Forms Column Descriptions.xlsx). Methodology of assessments are documented in USGS Data Series 547 for continuous assessments (https://pubs.usgs.gov/ds/547) and USGS DDS69-D, Chapter 21 for conventional assessments (https://pubs.usgs.gov/dds/dds-069/dds-069-d/REPORTS/69_D_CH_21.pdf).
DOI: 10.6073/pasta/bd8c1cc011851190a291862d6b3bfa52
title: Arctic grayling neutral genomic microsatellite loci from the Kuparuk, the Sagavanirktok (primarily Oksrukuyik Creek) and the Itkillik (primarily the I-Minus outlet stream) watersheds, 2010-2014

description: Since 2009, The FISHSCAPE Project (National Science Foundation grants: 1719267, 1417754, and 0902153), based at Toolik Field Station, has monitored physical, chemical, and biological parameters within three watersheds: The Kuparuk (including Toolik Lake and Toolik outlet stream), The Sagavanirktok (primarily Oksrukuyik Creek, but also including sections of the Atigun River and Tea and Galbraith Lakes), and Itkillik (primarily the I-Minus outlet stream a tributary that that feeds into the Itkilik River).  Goals of the FISHSCAPE project are to understand and predict the adaptability and persistence of a key Arctic species, the Arctic grayling (Thymallus arcticus), to changing climate and hydrology. Research questions include: (1) Does landscape structure determine movement within and among watersheds; (2) do populations adapt to stream characteristics at local and regional scales; and (3) will the relative adaptability of populations determine their persistence under future climate change.
We used genetics to investigate population structure and landscape genetics for Arctic grayling. Adult and young-of-the-year fish were captured at sampling locations and coordinates and/or specific station locations were noted. Fin clip samples (adults) or whole fish (young-of-the-year) were collected and preserved in 95% ethanol until Deoxyribonucleic acid (DNA) was extracted. Polymerase chain reaction (PCR) products from neutral genomic microsatellite loci were scored and used to assess population genetic structure and other population parameters. Adult capture and movement data, including length, weight and Passive Integrated Transponder (PIT) tag information, can be found in a separate data package.
DOI: 10.5281/zenodo.2658715
title: Estimations of Sensor Misorientation for Broadband Seismic Stations in and around Africa

description: To ensure the accuracy of future rotation-based seismological studies using data recorded by broadband seismic stations in Africa and environs, we investigate the sensor orientation of 1075 stations belonging to 41 seismic networks deployed in and around the African continent in the past three decades. We applied three independent waveform-based orientation estimation methods that involve the measurement of P-wave particle motion based on the principal component analysis, minimizing the P-wave energy on the transverse component of motion, and measuring intermediate-period Rayleigh-wave arrival angles from teleseismic earthquakes. This dataset is the compilation of the entire result of this study.
description: This dataset is associated with the our manuscript submitted to Seismology Research Letters