cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20227368.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 143)

description: There are 17 files in this dataset. This is the 143rd part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.25392/leicester.data.20051501
title: PCC Datasets: Surveys

description: The Political Cartooning and Peace-Building project was funded by the GCRF (Research England) in 2020/2021, working with partners in South Africa, Kenya and Ivory Coast. The goal of the project was to explore the use of political cartooning as a tool for addressing conflict and building peace with marginalised young people living in challenging circumstances. Participants completed surveys during their workshop experiences, and the dataset can be found here.
DOI: 10.25392/leicester.data.20051501.v1
title: PCC Datasets: Surveys

description: The Political Cartooning and Peace-Building project was funded by the GCRF (Research England) in 2020/2021, working with partners in South Africa, Kenya and Ivory Coast. The goal of the project was to explore the use of political cartooning as a tool for addressing conflict and building peace with marginalised young people living in challenging circumstances. Participants completed surveys during their workshop experiences, and the dataset can be found here.
DOI: 10.34740/kaggle/dsv/3904475
title: MICCAI Brats-2018 Original Dataset
DOI: 10.6084/m9.figshare.20227509
title: SwitchFuzz

description: The dataset of SwitchFuzz
DOI: 10.34636/dmportal/evv3du/yhlqom
title: 6550-GX1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/uccnej
title: 6550-GA2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/loup7u
title: 6550-GX2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/ox6aar
title: 6550-CX1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/vk5lkq
title: 6550-GA1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/lsc3jp
title: 6550-B1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/3dzgmr
title: 6550-GX2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/5nhvyx
title: 6550-B2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/xgenjr
title: 6550-B2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/5hhesc
title: 6550-GA1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/mz5r3g
title: 6550-inocula-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/4nmza3
title: 6550-GA2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/ynsjp3
title: 6550-inocula-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/bl7yel
title: 6550-CX2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/zamtfn
title: 6550-CX2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/465mvb
title: 6550-B1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/mszzjp
title: 6550-GX1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du/ou4dip
title: 6550-CX1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/evv3du
title: Microbiota sequencing - Raw FASTQ and/or Raw SFF

description: Microbiota DNA samples were analyzed using High-throughput sequencing (16S rRNA gene) by Illumina MiSeq Technology
DOI: 10.34636/dmportal/5qqljh/qczfpe
title: 6550-GX1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/njykx7
title: 6550-GA2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/pataug
title: 6550-GX2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/3tkpa1
title: 6550-CX1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/1hmh49
title: 6550-GA1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/kfqkpy
title: 6550-B1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/x4gwwz
title: 6550-GX2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/qmy42n
title: 6550-B2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/zcdzeo
title: 6550-B2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/hl5372
title: 6550-GA1-MS515F_R1.fastq

description: :unav
DOI: 10.5519/qd.j5f4ii9o
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4 records)
DOI: 10.34636/dmportal/5qqljh/hhp4ii
title: 6550-inocula-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/cxy3ii
title: 6550-GA2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/l3jw6e
title: 6550-inocula-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/vdwm5c
title: 6550-CX2-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/dqxg62
title: 6550-CX2-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/sqca2f
title: 6550-B1-MS515F_R2.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/nnvg5v
title: 6550-GX1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh/v5pdv8
title: 6550-CX1-MS515F_R1.fastq

description: :unav
DOI: 10.34636/dmportal/5qqljh
title: Microbiota sequencing - Raw FASTQ and/or Raw SFF

description: Microbiota DNA samples were analyzed using High-throughput sequencing (16S rRNA gene) by Illumina MiSeq Technology
DOI: 10.25392/leicester.data.20038538
title: CIC Media: Policy Brief

description: The Covid in Cartoons project engaged 15-18 year olds with political cartoons and cartoonists to foster processes of meaning-making in relation to the pandemic. Working with Cartooning for Peace and ShoutOut UK we engaged young people in building critical narratives of the crisis and its impact on their lives. We aimed to promote an inclusive, socially-responsive curriculum that supports young people's ability to cope in difficult circumstances. We used surveys, focus groups, and records of the participants' experiences in the form of workbooks to gather data. The project was led by Dr Fransiska Louwagie (PI) and Dr Diane Levine (Co-I), with postdoctoral associates Dr Kara Blackmore and Dr Sarah Weidman, and ran between January 2021 and July 2022. The Covid in Cartoons team produced a briefing for policy makers in January 2022. We provided insights from our data relating to the recovery curriculum and priorities represented by the Departments for Education and Culture, Media, and Sport. <br>
DOI: 10.25392/leicester.data.20038538.v1
title: CIC Media: Policy Brief

description: The Covid in Cartoons project engaged 15-18 year olds with political cartoons and cartoonists to foster processes of meaning-making in relation to the pandemic. Working with Cartooning for Peace and ShoutOut UK we engaged young people in building critical narratives of the crisis and its impact on their lives. We aimed to promote an inclusive, socially-responsive curriculum that supports young people's ability to cope in difficult circumstances. We used surveys, focus groups, and records of the participants' experiences in the form of workbooks to gather data. The project was led by Dr Fransiska Louwagie (PI) and Dr Diane Levine (Co-I), with postdoctoral associates Dr Kara Blackmore and Dr Sarah Weidman, and ran between January 2021 and July 2022. The Covid in Cartoons team produced a briefing for policy makers in January 2022. We provided insights from our data relating to the recovery curriculum and priorities represented by the Departments for Education and Culture, Media, and Sport. <br>
DOI: 10.6084/m9.figshare.20209387
title: Supplementary Material from Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’ (dicyemida + orthonectida, lophotrochozoa)

description: Dicyemids and orthonectids were traditionally classified in a group called Mesozoa, but their placement in a single clade has been contested and their position(s) within Metazoa is uncertain. Here, we assembled a comprehensive matrix of Lophotrochozoa (Metazoa) and investigated the position of Dicyemida (= Rhombozoa) and Orthonectida, employing multiple phylogenomic approaches. We sequenced seven new transcriptomes and one draft genome from dicyemids (<i>Dicyema</i>, <i>Dicyemennea</i>) and two transcriptomes from orthonectids (<i>Rhopalura</i>). Using these and published data, we assembled and analysed contamination-filtered datasets with up to 987 genes. Our results recover Mesozoa monophyletic and as a close relative of Platyhelminthes or Gnathifera. Because of the tendency of the long-branch mesozoans to group with other long-branch taxa in our analyses, we explored the impact of approaches purported to help alleviate long-branch attraction (e.g. taxon removal, coalescent inference, gene targeting). None of these were able to break the association of Orthonectida with Dicyemida in the maximum-likelihood trees. Contrastingly, the Bayesian analysis and site-specific frequency model in maximum-likelihood did not recover a monophyletic Mesozoa (but only when using a specific 50 gene matrix). The classic hypothesis on monophyletic Mesozoa is possibly reborn and should be further tested.
DOI: 10.6084/m9.figshare.20209387.v2
title: Supplementary Material from Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’ (dicyemida + orthonectida, lophotrochozoa)

description: Dicyemids and orthonectids were traditionally classified in a group called Mesozoa, but their placement in a single clade has been contested and their position(s) within Metazoa is uncertain. Here, we assembled a comprehensive matrix of Lophotrochozoa (Metazoa) and investigated the position of Dicyemida (= Rhombozoa) and Orthonectida, employing multiple phylogenomic approaches. We sequenced seven new transcriptomes and one draft genome from dicyemids (<i>Dicyema</i>, <i>Dicyemennea</i>) and two transcriptomes from orthonectids (<i>Rhopalura</i>). Using these and published data, we assembled and analysed contamination-filtered datasets with up to 987 genes. Our results recover Mesozoa monophyletic and as a close relative of Platyhelminthes or Gnathifera. Because of the tendency of the long-branch mesozoans to group with other long-branch taxa in our analyses, we explored the impact of approaches purported to help alleviate long-branch attraction (e.g. taxon removal, coalescent inference, gene targeting). None of these were able to break the association of Orthonectida with Dicyemida in the maximum-likelihood trees. Contrastingly, the Bayesian analysis and site-specific frequency model in maximum-likelihood did not recover a monophyletic Mesozoa (but only when using a specific 50 gene matrix). The classic hypothesis on monophyletic Mesozoa is possibly reborn and should be further tested.
DOI: 10.6084/m9.figshare.20209387.v1
title: Supplementary Material from Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’ (dicyemida + orthonectida, lophotrochozoa)

description: Dicyemids and orthonectids were traditionally classified in a group called Mesozoa, but their placement in a single clade has been contested and their position(s) within Metazoa is uncertain. Here, we assembled a comprehensive matrix of Lophotrochozoa (Metazoa) and investigated the position of Dicyemida (= Rhombozoa) and Orthonectida, employing multiple phylogenomic approaches. We sequenced seven new transcriptomes and one draft genome from dicyemids (<i>Dicyema</i>, <i>Dicyemennea</i>) and two transcriptomes from orthonectids (<i>Rhopalura</i>). Using these and published data, we assembled and analysed contamination-filtered datasets with up to 987 genes. Our results recover Mesozoa monophyletic and as a close relative of Platyhelminthes or Gnathifera. Because of the tendency of the long-branch mesozoans to group with other long-branch taxa in our analyses, we explored the impact of approaches purported to help alleviate long-branch attraction (e.g. taxon removal, coalescent inference, gene targeting). None of these were able to break the association of Orthonectida with Dicyemida in the maximum-likelihood trees. Contrastingly, the Bayesian analysis and site-specific frequency model in maximum-likelihood did not recover a monophyletic Mesozoa (but only when using a specific 50 gene matrix). The classic hypothesis on monophyletic Mesozoa is possibly reborn and should be further tested.
DOI: 10.6084/m9.figshare.19170209
title: Trajectory-Based Algorithm Selection with Warmstarting - Reproducibility

description: The files included accompany the paper "Trajectory-Based Algorithm Selection with Warmstarting"<br>The python-script 'data_collection.py' makes use of the 'dynas.zip' code to run data collection by using IOHexperimenter. The corresponding data is available in 'Performance_Data.zip' (and the collected state features in 'state_features.zip'). The code for generating the figures shown in the paper is included in 'Visualization;ipynb' and 'plot_convergence_curves.R'.<br>The 'data_to_model.zip' contains the results of running the regression models on the performance data, which is then used to create the overall analysis of the models. The 'AlgoSelector.zip' contains all files related to the creation of these models.<br>The remaining pdf-files correspond to figures shown in the paper and their equivalents for other settings which could not fit within the page limit.<br><br>
DOI: 10.6084/m9.figshare.19170209.v1
title: Trajectory-Based Algorithm Selection with Warmstarting - Reproducibility

description: The files included accompany the paper "Trajectory-Based Algorithm Selection with Warmstarting"<br>The python-script 'data_collection.py' makes use of the 'dynas.zip' code to run data collection by using IOHexperimenter. The corresponding data is available in 'Performance_Data.zip' (and the collected state features in 'state_features.zip'). The code for generating the figures shown in the paper is included in 'Visualization;ipynb' and 'plot_convergence_curves.R'.<br>The 'data_to_model.zip' contains the results of running the regression models on the performance data, which is then used to create the overall analysis of the models. The 'AlgoSelector.zip' contains all files related to the creation of these models.<br>The remaining pdf-files correspond to figures shown in the paper and their equivalents for other settings which could not fit within the page limit.<br><br>
DOI: 10.25392/leicester.data.19852756
title: CIC Instruments: Surveys

description: The Covid in Cartoons project engaged 15-18 year olds with political cartoons and cartoonists to foster processes of meaning-making in relation to the pandemic. Working with Cartooning for Peace and ShoutOut UK we engaged young people in building critical narratives of the crisis and its impact on their lives. We aimed to promote an inclusive, socially-responsive curriculum that supports young people's ability to cope in difficult circumstances. We used surveys, focus groups, and records of the participants' experiences in the form of workbooks to gather data. The project was led by Dr Fransiska Louwagie (PI) and Dr Diane Levine (Co-I), with postdoctoral associates Dr Kara Blackmore and Dr Sarah Weidman, and ran between January 2021 and July 2022. Covid in Cartoons participants completed surveys before and after completing the minicourse focused on meaning making through political cartooning during the pandemic. The composite instrument, derived from other validated measures, can be found here.
DOI: 10.25392/leicester.data.19852756.v1
title: CIC Instruments: Surveys

description: The Covid in Cartoons project engaged 15-18 year olds with political cartoons and cartoonists to foster processes of meaning-making in relation to the pandemic. Working with Cartooning for Peace and ShoutOut UK we engaged young people in building critical narratives of the crisis and its impact on their lives. We aimed to promote an inclusive, socially-responsive curriculum that supports young people's ability to cope in difficult circumstances. We used surveys, focus groups, and records of the participants' experiences in the form of workbooks to gather data. The project was led by Dr Fransiska Louwagie (PI) and Dr Diane Levine (Co-I), with postdoctoral associates Dr Kara Blackmore and Dr Sarah Weidman, and ran between January 2021 and July 2022. Covid in Cartoons participants completed surveys before and after completing the minicourse focused on meaning making through political cartooning during the pandemic. The composite instrument, derived from other validated measures, can be found here.
DOI: 10.6084/m9.figshare.20227515.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 145)

description: There are 17 files in this dataset. This is the 145th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20227515
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 145)

description: There are 17 files in this dataset. This is the 145th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.34740/kaggle/dsv/3073276
title: LINAIGE
DOI: 10.15468/7jknmk
title: Global Register of Introduced and Invasive Species - Uruguay

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.6084/m9.figshare.20228163
title: System Usability Scale Data

description: System Usability Scale (SUS) data incl. assessment and figure 4.
DOI: 10.48479/hhhy-4r55
title: Modelling of PKS B 1934-638 (J193925.0-634245)

description: We publish a model of the Gigahertz Peaked quasar PKS B 1934-638. The source is a milliarcsecond scale passband and flux scale calibrator in use by, for instance, the Compact Array. We show the effect of neglecting off-axis sources on the transferred bandpass solutions. We supply an end user model of the calibrator and the surrounding AGN population, in the apparent scale, for use in calibrating the bandpasses of the 64 homogeneous MeerKAT array in both UHF and L-band. We find that, especially, at UHF band the bandpass solutions may be biased to the 40% level due to the surrounding AGN population. We additionally publish an estimate to the UHF band System Equivalent Flux Density for use in sensitivity estimation of continuum and spectral line observation. Finally we show that systemic second order leakages limit the achievable dynamic range next to very strong compact sources close to boresight to the level of -30 to -40 dB. After correcting with the CubiCal calibration package we achieve a MeerKAT dynamic range of 0.5m:1 immediately next to the strong calibrator source.
DOI: 10.5281/zenodo.6798158
title: Model output and PTt marker data for van Agtmaal et al., 2022 (in review), Frontiers in Earth Science

description: Model output for reproduction of key figures in the manuscript van Agtmaal et al. titled "Quantifying continental collision dynamics for Alpine-style orogens" currently under revision in Frontiers in Earth Science
description: needs scripts from https://github.com/LvAprograms/vanAgtmaaletal-2022-frontiers to plot the data
DOI: 10.5281/zenodo.6784339
title: Model output and PTt marker data for van Agtmaal et al., 2022 (in review), Frontiers in Earth Science

description: Model output for reproduction of key figures in the manuscript van Agtmaal et al. titled "Quantifying continental collision dynamics for Alpine-style orogens" currently under revision in Frontiers in Earth Science
description: needs scripts from https://github.com/LvAprograms/vanAgtmaaletal-2022-frontiers to plot the data
DOI: 10.20372/aau_rdr/69pcmy/b5hmfl
title: HRM Assign..docx

description: :unav
DOI: 10.20372/aau_rdr/69pcmy
title: HRM

description: HRM data