cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14065091
title: Proteomic analysis data across the four developmental stages of Fasciola hepatica

description: The raw proteomic sequencing data of F. hepatica were obtained from the iProX database (https://www.iprox.cn/; Project ID: IPX0002165000). The dataset includes mass spectrometry (MS)-based proteomic data from four developmental stages of F. hepatica: (1) Metacercaria (infected Galba pervia were cultured under suitable conditions for 30–45 days, during which cercariae emerged and underwent cyst formation, and the metacercariae were collected), (2) Juvenile fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 28 days), (3) Immature fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 59 days), and (4) Adult fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 118 days) [PMID:  32757109]. The most recent FASTA format protein sequences of F. hepatica were downloaded from the UniProt database on October 12, 2024, using the keyword “Fasciola hepatica”. Proteomic raw data analysis was conducted using MaxQuant v2.6.5.0, extracting key columns from the proteinGroups file, including peptide counts, LFQ intensity values, coverage, molecular weight, and FASTA headers. Furthermore, Z-score standardization was applied to normalize the LFQ intensity column.
DOI: 10.5281/zenodo.14065092
title: Proteomic analysis data across the four developmental stages of Fasciola hepatica

description: The raw proteomic sequencing data of F. hepatica were obtained from the iProX database (https://www.iprox.cn/; Project ID: IPX0002165000). The dataset includes mass spectrometry (MS)-based proteomic data from four developmental stages of F. hepatica: (1) Metacercaria (infected Galba pervia were cultured under suitable conditions for 30–45 days, during which cercariae emerged and underwent cyst formation, and the metacercariae were collected), (2) Juvenile fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 28 days), (3) Immature fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 59 days), and (4) Adult fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 118 days) [PMID:  32757109]. The most recent FASTA format protein sequences of F. hepatica were downloaded from the UniProt database on October 12, 2024, using the keyword “Fasciola hepatica”. Proteomic raw data analysis was conducted using MaxQuant v2.6.5.0, extracting key columns from the proteinGroups file, including peptide counts, LFQ intensity values, coverage, molecular weight, and FASTA headers. Furthermore, Z-score standardization was applied to normalize the LFQ intensity column.
DOI: 10.5281/zenodo.14065139
title: Proteomic analysis data across the four developmental stages of Fasciola hepatica

description: The raw proteomic sequencing data of F. hepatica were obtained from the iProX database (https://www.iprox.cn/; Project ID: IPX0002165000). The dataset includes mass spectrometry (MS)-based proteomic data from four developmental stages of F. hepatica: (1) Metacercaria (infected Galba pervia were cultured under suitable conditions for 30–45 days, during which cercariae emerged and underwent cyst formation, and the metacercariae were collected), (2) Juvenile fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 28 days), (3) Immature fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 59 days), and (4) Adult fluke (worms extracted from the livers of sheep artificially infected with metacercariae for 118 days) [PMID:  32757109]. The most recent FASTA format protein sequences of F. hepatica were downloaded from the UniProt database on October 12, 2024, using the keyword “Fasciola hepatica”. Proteomic raw data analysis was conducted using MaxQuant v2.6.5.0, extracting key columns from the proteinGroups file, including peptide counts, LFQ intensity values, coverage, molecular weight, and FASTA headers. Furthermore, Z-score standardization was applied to normalize the LFQ intensity column.
DOI: 10.17632/7rtb478txr
title: LINF_070007800

description: Homoserine dehydrogenase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vrp9fxdg2p
title: LINF_320027900

description: R-SNARE protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vy883wdb5w
title: Data for: "ESCREVIVÊNCIA: O CANSATIVO PROCESSO DE SER UMA OUTSIDER INTERNA NA PÓS-GRADUAÇÃO" published by RAC-Revista de Administração Contemporânea

description: In this text, I reflect on the exhaustive process and the deep discomfort of becoming an outsider within the Business Administration postgraduate course. Throughout the text, I expose knowledge related to Conceição Evaristo’s writing (or escrevivências).
Thus, based on this guiding thread, I promote the rescue of memory, orality, stories, and trajectories based on a diasporic phenomenon originating in the figure of “Mãe Preta” (or Black Mother). Moreover, I combine black feminist authors with the debate to reflect on the intersections in the memories exposed in autobiographical narratives. My observations are also shaped by the exposure to the concept of the outsider within, reflecting experiences of less powerful groups that face paradigmatic thoughts of a more robust community of insiders.
Worth highlighting, this article uses the “escrevivências” based on Conceição Evaristo to revisit memories. Thus, the data explored starts from the imaginary and reveals biographical information. In this way, the article employs an autobiography to delve into the experiences and perspectives of black women. For that reason, drawing from a dialogue that promotes creative works.
In that regard, there are no precise, statistical, and quantifiable materials. The reflections based on knowledge are memory, oral traditions, narratives, and life journeys. I emphasize that all these center on the symbol of the “Mãe Preta” (or Black Mother).
This approach originates from the experiences of black women. That perspective aims to dismantle historical representations. Addressing exhaustion from connecting views with black feminism was done with freewriting.
Thus, it aims to foster an epistemic resistance against oppression within various societal structures. This pursuit of the ancestral imprints embedded in memory units is the shared experiences.
The data, thus, emerge as a testament, recorded within the skin, reflecting the oppressions and suppressions faced by the black body. Through this practice, images of the past produced apathetic and voiceless identities in the face of social dynamics undone. Also, reflections, reception, and representation of all peoples I encourage, addressing not only the personal drama but the history of a community.
Finally, I articulate, through a utopian effort, possible ways for postgraduate courses in Administration to break through the obstacles experienced and raise the potential for those who are willing to contribute to the social, scientific, and theoretical development of the country.
Thus, the “escrevivências” helped to align body, condition, and experience to understand the revelation of black people. This movement enabled me to craft memories and have literary and linguistic independence.
DOI: 10.17632/5nr26bfsz2
title: LINF_350017800

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/75ts7tc9yr
title: LINF_360037100

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rvxvgfv3vn
title: LINF_350054200

description: ATOM40
Leishmania infantum (strain JPCM5)
DOI: 10.17632/8hcm2675b7
title: Dexamethasone effects on monocytes polarization

description: In this study, rat monocytes were separated and differentiated into macrophages by treating them with an optimized concentration of Dex. After confirming the differentiation of the macrophages, they were treated with antigens derived from rabbit red blood cells. The in vivo study evaluated the effects of autograft injection of cells treated with Dex, which contained antigens, on the modulation of innate and specific immune responses, as well as the induction of potential pathological lesions.
DOI: 10.17632/wchtm5kmnp
title: Laminae features, genesis of semi-deep lacustrine shale with the impact on shale oil enrichment

description: Advanced mineral identification and characterization system (AMICS),Rock-eval measurement,X-ray diffraction (XRD),Low-pressure nitrogen physisorption (LNP),Lithofacies statistics by XRF, are summarized in the given database.
DOI: 10.17632/bpj99zrshg
title: Thalamic regulation of a visual critical period and motor behavior. Hageter et al.

description: During the visual critical period (CP), sensory experience refines the structure and function of visual circuits. The basis of this plasticity was long thought to be limited to cortical circuits, yet recently described thalamic plasticity challenges this dogma and demonstrates greater complexity underlying visual plasticity. Yet how visual experience modulates thalamic neurons or how the thalamus modulates CP timing is incompletely understood. Using a larval zebrafish, thalamus-centric ocular dominance model, we show functional changes in the thalamus and a role of inhibitory signaling to establish CP timing using a combination of functional imaging, optogenetics, and pharmacology. Hemisphere-specific changes in genetically defined thalamic neurons correlate with changes in visuomotor behavior, establishing a role of thalamic plasticity in modulating motor performance. Together, our work demonstrates that visual plasticity is broadly conserved and that visual experience leads to neuron-level functional changes in the thalamus that require inhibitory signaling to establish critical period timing.
DOI: 10.17632/gg396xfj5t
title: LINF_350044000

description: T-complex protein 1 - eta subunit | TCP1η
Leishmania infantum (strain JPCM5)
DOI: 10.17632/hc64yzfyr6
title: Supplemental data: Variations in salivary oxytocin, eye caruncle temperature and behavior indicate anticipation and valuing of environmental enrichment material in fattening pigs

description: This document provides supplemental data and respective R script to the manuscript "Variations in salivary oxytocin, eye caruncle temperature and behavior indicate anticipation and valuing of environmental enrichment material in fattening pigs" submitted to the journal Physiology and Behavior on July 04, 2023.

The study reports an experimental study exploring the potential of physiological and behavioral measures to non-invasively detect anticipatory responses to environmental enrichment in fattening pigs. Our results illustrate that lachrymal caruncle temperature, measured by infrared thermography, salivary oxytocin, and play behavior can vary in response to short-term changes in anticipation. This study represents a step toward the development of non-invasive measures to investigate anticipation and, consequently, affective states in pigs and the progress of the study of animal emotions.

The experimental procedures were carried out in accordance with the Ministry of Food, Agriculture and Fisheries, The Danish Veterinary and Food Administration under act 474 of 15. May 2014 and executive order 2028 of 14. December 2020, and under consideration of the ARRIVE Guidelines (Du Sert et al., 2020). The study was developed as part of project PIGWEB funded by the European Union’s Horizon 2020 research and innovation program under grant agreement No. 101004770.
DOI: 10.17632/m9dr9yt3gj
title: LINF_340029300

description: Centrin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sdvpm9mf6m
title: Data for stratigraphic, granulometric, geochemical and authigenic 10Be/9Be geochronological analysis of Upper Miocene outcrops in the Turiec Basin, Western Carpathians (Central Europe)

description: The presented data support the paper Šujan et al. (2023) Palaeogeography, Palaeoclimatology, Palaeoecology 628, 111746. It include depiction of raw borehole profiles in geological sections, sedimentological data from outcrops and specification of samples taken from the outcrops of Upper Miocene strata, present in the Turiec Basin (Western Carpathians, Central Europe). The samples underwent granulometric analysis by sieving and laser diffraction and geochemical analysis by X-ray fluorescence, ICP-ES and ICP-MS. Moreover, the samples were subject to geochronological analysis by authigenic 10Be/9Be dating, and the provided sheets include all input data, which were acquired during sample processing, ICP-MS measurements of beryllium concentrations and AMS measurements of 10Be/9Be ratios, which ultimately served for calculation of natural authigenic 10Be/9Be ratios. The concentration of beryllium, iron and manganese in the authigenic phase was analyzed by ICP-MS.
DOI: 10.17632/zrb27bzsmz
title: Milk fat globule membrane protects Bifidobacterium longum ssp. infantis ATCC 15697 against bile stress by modifying global transcriptional responses

description: Milk fat globule membrane (MFGM) can protect probiotic bacteria from bile stress. However, its potential mechanism has not been reported. We studied that the viability, morphology and gene transcriptional response of Bifidobacterium longum subsp. infantis ATCC 15697 (BI_15697) stressed by bile salts with or without MFGM. It was shown that MFGM alleviated the reduction in BI_15697 population induced by 0.2% porcine bile stress and restored the population to the control levels. MFGM ameliorated the shrunken, fragmented appearance and irregular morphology of BI_15697 and maintained cell integrity disrupted by bile stress. RNA-seq results showed that MFGM increased transport of glucose and raffinose and decreased that of branched-chain amino acids (BCAA) in the presence of bile salts. MFGM stimulated the expression of genes involved in the synthesis of raffinose in galactose metabolism and the metabolism of BCAA, suggesting that MFGM stimulated the accumulation of raffinose and BCAA in the presence of bile. In addition, MFGM stimulated the expression of two bile efflux transporters under bile stress. Together, the multifactorial response helps BI_15697 excrete bile salts and maintain cellular integrity in response to bile stress. Seven supplementary tables was presented here for this paper.
DOI: 10.17632/w3dpcscw9c
title: LINF_340047300

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cr34n62myj
title: Living in the mountains: thermal ecology and freezing tolerance of the lizard Abronia taeniata (Squamata: Anguidae)

description: The impact of daily and seasonal variation in environmental temperature on lizards is important, since their physiological processes are body temperature dependent. Lizards that occupy mountainous areas must have been favoured to colonize such habitats through selection on thermal biology traits to thermoregulate effectively. Moreover, mountain lizards may be able to maintain their activity near their minimum critical temperature and even have antifreeze mechanisms. Tolerance of freezing is related to the biosynthesis of cryoprotective molecules, such as glucose, whose concentration may increase after freezing. The aims of the present work were: (1) study the thermoregulation of the viviparous lizard Abronia taeniata, and (2) determine its survival and/or tolerance to freezing. This species occurs in pine forests, pine-oak forests, and mountain mesophilic forests in areas that reach freezing temperatures. In the field, we recorded air, substrate, and body temperatures at capture time of the lizards, and registered operative temperatures at the study area. In the laboratory, we determined thermal preferences, crystallization point, and blood glucose levels of individuals before and after freezing. We found out that A. taeniata sustains activity in a wide range of temperatures, actively avoids thermally favourable microhabitats in spring, and is a moderate thermoregulator during autumn and winter. In A. taeniata, the body temperatures are tightly linked to air and substrate temperatures. Seasonality had an effect over body temperature, preferred temperatures and thermoregulatory effectiveness indices. When exposed to temperatures below zero, A. taeniata showed an increase in blood glucose levels, which aided them in surviving freezing. Taken together, our results suggest that A. taeniata may sustain activity at low environmental temperatures, due to an effective behavioural thermoregulation, and in case temperatures of its habitat go below zero, is also capable of tolerate freezing.
DOI: 10.17632/jn2rf9s6d7
title: Supplementary Information for 'Insights into the terminal Ediacaran marine carbonate record from shale-hosted carbonate carbon isotopes'

description: Supplementary information for article accepted for publication in the American Journal of Science. Article entitled 'Insights into the terminal Ediacaran marine carbonate record from shale-hosted carbonate carbon isotopes'. Supplementary Information includes details of analytical methods, statistical tests and carbon and oxygen isotopic data.
DOI: 10.17632/my8r4pghgf
title: LINF_350045000

description: U5 snRNA-associated splicing factor | PRP8
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jb279whdkj
title: Instances for the multi-trip team orienteering problem with integrated tours for blood transportation

description: The instance title presents the number of potential nodes (n), the number of periods (h), the number of mobile collection sites (m), and the number of shuttles (u). Each instance presents the following:

First, general information:

n: number of nodes, i.e., the potential sites plus the two nodes representing the blood center.
m: number of mobile collection sites
u: number of shuttles
Q: capacity of the mobile collection sites [whole-blood units]
h: number of periods of the planning horizon
tMax: arrival time limit [units of time]

Second, parameters related to each period t:

q: total demand [whole-blood units]
qPLT: demand for whole-blood units intended to produce platelets and cryoprecipitate

Third, parameters related to each node i, where the first and last nodes correspond to the blood center and the others to the potential sites:

x and y: coordinates
s: service time [units of time]
p: total donation level or profit [whole-blood units]
e: opening time of activities [units of time]
l: closing time of activities [units of time]

Finally, the travel times between each pair of nodes
DOI: 10.17632/cvr77cr6ry
title: Adaptable Three-pin Skull Clamp for Large Animal Research

description: Design files for building an adjustable three-pin skull clamp surgical system for animal research. Files are available as PDFs for engineering drawings, Solidworks files (.SLDPRT,.SLDDRW,.SLDASM), and STEP files for general CAD use.

System was designed for neurobiological researchers using large animal models to practice surgical approaches identical to those performed in humans. The system is highly adjustable, also allowing researchers to attempt novel surgical approaches.
DOI: 10.17632/7r2cb6bxmg
title: LINF_280029600

description: DNA topoisomerase 2; Leishmania infantum (strain JPCM5)
DOI: 10.17632/84g2tb8pjv
title: Hormonal modulation of reproduction and fertility signaling in polistine wasps.

description: Data sets and R scripts
DOI: 10.17632/nfzgdcw8d4
title: HUMAN-ELEPHANT CONFLICT: TEMPORAL CHANGES AND ASSOCIATED FACTORS IN THE TROPICAL FOREST OF SOUTHERN INDIA

description: Human-elephant conflict data were collected from 14 villages located in Mudumalai Tiger Reserve from Nov-2006 to Mar-2008. The locations of crop-raiding incidences were obtained using the GPS (Garmin e-trex). All the crop fields in a village with the owner of the land, land area, crop protection method, crops, planting months, fruit trees, and nearest water resources available within the village were located. The area of cultivation, the stage of the crop, and the proportion of damage were assessed quantitatively. The crop protection method, extent, and elephant damage were assessed.
DOI: 10.17632/t9rm942rhj
title: LINF_310031750

description: hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pmp46m3g4n
title: LINF_280024000

description: GTPase activating protein for Arf; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rkp6r6h49k
title: Análisis de pertinencia programa de medicina UCC Medellín 2022

description: Contiene la tabla de datos depurada de la encuesta para evaluación de la pertinencia del programa de medicina de la Universidad Cooperativa de Colombia, ejecutada en el año 2022 en función de la acreditación internacional del programa; además, incluye el código utilizado en R y RStudio para el análisis del grupo de datos
DOI: 10.17632/yrdncfxnxf
title: SK_Mengajar Universitas Tadulako 2016

description: SK_Mengajar Universitas Tadulako 2016
DOI: 10.17632/6c43x2856f
title: Just showy or simply honest? Signalling of the floral reward in yellow iris (Iris pseudacorus L.)

description: Abstract
Pollinators often cannot directly assess the quality and quantity of rewards offered by flowers. As a result, the interaction between plants and pollinators is mediated by the expression of signals that advertise the rewards. As pollinators are looking for rewards, they should prefer honest signals, which indicate reward properties. To gain more insight into the factors shaping plant-pollinator interactions, we tested the relationship between the visual features of exceptionally large Iris pseudacorus and the quantity and quality of the food reward offered. We assessed the frequency of pollinator visits to the measured flowers and their reproductive success. Additionally, we experimentally changed the visual features of flowers, which may play a role in plant-pollinator communication (tepals shortening or covering the spot on the tepals) and assessed the frequency of pollinator visits and reproductive success in such modified flowers. Our results indicate that flower traits are predictors of reward properties. For example, the spot on the tepal is an indicator of the nectar volume. We found correlations between flower size and the sugar or amino acid amount. The size of the flower traits did not influence the frequency of pollinator visits, but removing the spot on the tepal resulted in a lower frequency of visits. Flowers were mostly visited by Apis mellifera, which was responsible for more than 80% of the recorded visits. Thus, by analysing the collected data, we can infer that some flower features may be an honest signal for pollinators; however, A. mellifera does not use it while foraging.

Data description
Data was collected in June and September 2021. The aim of the study was to investigate the occurrence of the "Honest signaling" phenomenon in the case of Iris psuedacorus. The research carried out consisted of measuring the flowers and recording pollinator activity in these flowers, as well as collecting nectar for chemical analysis. Seeds were also collected from the measured plants to test their reproductive success. In addition, in some of the studied plants, the authors modified the morphology of flowers.
The data includes:
-measurements of individual parts of Iris pseudacorus flowers collected in the field
-data on the frequency of visits to flowers by their pollinators collected in the field
-nectar chemical analysis data
-data on the number of seeds collected
DOI: 10.17632/ywdh7fj632
title: LINF_100011700

description: Formin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kc7f83hmkz
title: LINF_240015800

description: AKAP7 NLS domain-containing protein; Leishmania infantum (strain JPCM5)