cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4s4yf0
title: Occurrence Download

description: A dataset containing 5207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psittacara wagleri (G.R.Gray, 1845)"
 ]
}

 The dataset includes 5207 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007072-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v474w9
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agathomyia wankowiczii (Schnabl, 1884)"
 ]
}

 The dataset includes 476 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289866-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kui7jc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Benthic macrofauna abundance of sediment core 13077-019"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012720-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgc2ur
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quasipaa jiulongensis (Huang & Liu, 1985)"
 ]
}

 The dataset includes 117 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001454-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2leu0
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Labeobarbus ruasae (Pappenheim, 1914)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007072-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pahp3
title: Occurrence Download

description: A dataset containing 1281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callithrix jacchus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1281 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287857-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rbygk
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Fringilla teydea Webb, Berthelot & Moquin-Tandon, 1836"
 ]
}

 The dataset includes 581 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012720-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fslcb
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "TaxonKey is Castratella Naudin"
 ]
}

 The dataset includes 157 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001454-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn7dv8
title: Occurrence Download

description: A dataset containing 1260857 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syrphidae"
 ]
}

 The dataset includes 1260857 records from 886 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319319-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7981153
title: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function

description: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function
DOI: 10.5281/zenodo.7981152
title: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function

description: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function
DOI: 10.5281/zenodo.8046233
title: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function

description: Dataset for https://github.com/AlexanderKroll/ESP_prediction_function
DOI: 10.6084/m9.figshare.22269082.v1
title: Supplementary Material for: Waldenström macroglobulinemia and non-IgM-type lymphoplasmacytic lymphoma are genetically similar

description: Introduction Waldenström macroglobulinemia (WM) represents a subset of lymphoplasmacytic lymphoma (LPL) with the immunoglobulin (Ig)M paraprotein. MYD88 L265P and CXCR4 mutations are common mutations in WM patients, and mutations in ARID1A and KMT2D (MLL2) have also been reported. However, little information has been accumulated on genetic changes in LPL with other paraproteins like IgG. Methods We therefore aimed to evaluate genetic differences between WM and LPL with non-IgM paraprotein (non-IgM-type LPL) using targeted next-generation sequencing (NGS) in 20 Japanese patients (10 with WM, 10 with non-IgM-type LPL). Results Mutations were detected in ARID1A (10%), CXCR4 (20%), MYD88 (90%), and KMT2D (0%) for WM patients, and in ARID1A (10%), CXCR4 (20%), MYD88 (70%), and KMT2D (10%) for non-IgM-type LPL patients. No significant differences were identified. No mutations were detected in NOTCH2, PRDM1, CD274 (PD-L1), PDCD1LG2 (PD-L2), RAG2, MYBBP1A, TP53, or CD79B. Discussion Mutant allele frequency in MYD88 L265P did not differ significantly between WM and non-IgM-type LPL. Most mutations detected by NGS were subclonal following MYD88 L265P, although one non-IgM-type LPL patient harbored only CXCR4 S338X mutation. Our NGS analyses reveal genetic characteristics in LPL patients and suggest genetic similarities between these two subsets of LPL, WM and non-IgM-type.
DOI: 10.5281/zenodo.5569500
title: American University Men of China (1936)

description: The following dataset is based on American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936. It contains the list of the 418 members - both Chinese and non Chinese - of the American University Club of China (Shanghai) based on the above directory that the club published in 1936. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-1949 China. The attached file comprises several tabs: <em>Members</em>: List of members with their national origin, education, membership status and current employer (or main affiliation). Each row corresponds to a unique academic curriculum. Each individual can have several rows, as many as the number of curricula he enrolled. <em>Officers, Memoriam</em>: List of officers (officers) and past members (memoriam) <em>Fields</em>: Description of variables <em>Meta</em>_: Description of meta-categories devised for analytical purposes (academic degrees, US states/regions, employment sector)
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.5281/zenodo.5569499
title: American University Men of China (1936)

description: The following dataset is based on American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936. It provides information on the 418 members - both Chinese and non-Chinese - of the American University Club of China (Shanghai) recorded in the directory. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-Communist China. The attached file comprises two tabs, one for the data and one for describing the variables (key).
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.5281/zenodo.6370085
title: American University Men of China (1936)

description: The following dataset contains the list of the 418 members - both Chinese and non-Chinese - of the American University Club of China (Shanghai), based on a directory published in 1936. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-1949 China. The attached file comprises two tabs, one for the data and one for describing the variables (fields). The dataset includes the following variables: Group Name Description DataType Identity Name_full Full name, as given in source (English or Wade-Giles) Raw Identity SurName Surname as given in source Raw Identity FirstName First name or initials, as given in source Raw Identity Name_zh Full name in Chinese Raw Identity Name_py Pinyin transliteration of full name Cooked Identity Nationality Nationality or country of origin Cooked Identity Deceased Deceased member or not Raw Club Membership Life_member Life membership in AUC (year of admission) Raw Education University University in which the individual studied Raw Education State State in which the university was located Cooked Education Country_edu Country in which the university was located Cooked Education Degree_source Academic degree, as given in source Raw Education Degree_level Level of qualification Cooked Education Field_main Field of study (general category) Cooked Education Field_2 Field of study (subcategory) Cooked Education Year_start Year of enrollment Raw Education Year_end Year of graduation Raw Education Honorary Honorary degree Cooked Career Employer_main Employer (name of institution, main level) Raw Career Employer_2 Employer (institution sublevel) Raw Career Sector_1 Sector of employment (main category) Cooked Career Sector_2 Sector of employment (subcategory) Cooked Career Country_1936 Country of residence or employment (1936) Cooked Career City City of residence or employment (1936) Raw Career Street_name Current address (business or residence): street name (main) Raw Career Street_2 Current address (business or residence): street name (secondary) Raw Career Street_nbr Current address (business or residence): street number Raw Career Building Current address (business or residence): building name Raw Metadata Page Source: Page number in the original source Raw Note: "DataType" indicates whether the information was provided as such in the original source, or whether it was re-processed by the historian. Référence: American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936.
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.5281/zenodo.6370094
title: American University Men of China (1936)

description: The following dataset is based on American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936. It provides information on the 418 members - both Chinese and non-Chinese - of the American University Club of China (Shanghai) recorded in the directory. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-Communist China. The attached file comprises two tabs, one for the data and one for describing the variables (key).
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.5281/zenodo.8047047
title: American University Men of China (1936)

description: The following dataset is based on American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936. It provides information on the 418 members - both Chinese and non-Chinese - of the American University Club of China (Shanghai) recorded in the directory. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-Communist China. The attached file comprises two tabs, one for the data and one for describing the variables (key).
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.5281/zenodo.8047064
title: American University Men of China (1936)

description: The following dataset is based on American University Club of Shanghai. <em>American University Men in China</em>. Shanghai: Comacrib Press, 1936. It provides information on the 418 members - both Chinese and non-Chinese - of the American University Club of China (Shanghai) recorded in the directory. Established around 1902, the American University Club (AUC) was one of the earliest and largest organizations of American university alumni in pre-Communist China. The attached file comprises two tabs, one for the data and one for describing the variables (key).
description: We are most grateful to Dr. Jiang Jie (Shanghai Normal University) who kindly provided us with a digital copy of the directory.
DOI: 10.6084/m9.figshare.23294720
title: Supplementary Material for: Disruptive and Truncating <i>TP53</i> Mutations Are Associated with African-Ancestry and Worse Prognosis in Brazilian Patients with Lung Adenocarcinoma

description: <b><i>Introduction:</i></b> <i>TP53</i> is the most frequently mutated gene in lung tumors, but its prognostic role in admixed populations, such as Brazilians, remains unclear. In this study, we aimed to evaluate the frequency and clinicopathological impact of <i>TP53</i> mutations in non-small cell lung cancer (NSCLC) patients in Brazil. <b><i>Methods:</i></b> We analyzed 446 NSCLC patients from Barretos Cancer Hospital. <i>TP53</i> mutational status was evaluated through targeted next-generation sequencing (NGS) and the variants were biologically classified as disruptive/nondisruptive and as truncating/nontruncating. We also assessed genetic ancestry using 46 ancestry-informative markers. Analysis of lung adenocarcinomas from the cBioportal dataset was performed. We further examined associations of <i>TP53</i> mutations with patients’ clinicopathological features. <b><i>Results:</i></b> <i>TP53</i> mutations were detected in 64.3% (<i>n</i> = 287/446) of NSCLC cases, with a prevalence of 60.4% (<i>n</i> = 221/366) in lung adenocarcinomas. <i>TP53</i> mutations were associated with brain metastasis at diagnosis, tobacco consumption, and higher African ancestry. Disruptive and truncating mutations were associated with a younger age at diagnosis. Additionally, cBioportal dataset revealed that <i>TP53</i> mutations were associated with younger age and Black skin color. Patients harboring disruptive/truncating <i>TP53</i> mutations had worse overall survival than nondisruptive/nontruncating and wild-type patients. <b><i>Conclusion:</i></b> <i>TP53</i> mutations are common in Brazilian lung adenocarcinomas, and their biological characterization as disruptive and truncating mutations is associated with African ancestry and shorter overall survival.
DOI: 10.6084/m9.figshare.22427863
title: Supplementary Material for: Prenatal stress induces translational disruption associated with myelination deficits

description: Background: Disruptions to neurodevelopment is known to be linked to behavioural disorders in childhood and into adulthood. The fetal brain is extremely vulnerable to stimuli that alter inhibitory GABAergic pathways and critical myelination processes programming long-term neurobehavioural disruption. The maturation of the GABAergic system into the major inhibitory pathway in the brain, and the development of oligodendrocytes into mature cells capable of producing myelin are integral components of optimal neurodevelopment. The current study aimed to elucidate prenatal stress-induced mechanisms that disrupt these processes, and to delineate the role of placental pathways in these adverse outcomes. Methods: Pregnant guinea pig dams were exposed prenatal stress with strobe light exposure for 2hrs/day on gestational age (GA) 35, 40, 45, 50, 55, 60 and 65, and groups of fetuses and placentae were collected after the stress exposure on GA40, GA50, GA60 and GA69 (term). Fetal plasma, placental and brain tissue were collected for allopregnanolone and cortisol quantification with ELISA. Relative mRNA expression of genes of specific pathways of interest were examined with real-time PCR in placental and hippocampal tissue, and myelin basic protein (MBP) was quantified immunohistochemically in the hippocampus and surrounding regions for assessment of mature myelin. Results: Prenatal stress in mid-late gestation resulted in disruptions to the translational machinery responsible for the production of myelin, and decreased myelin coverage in the hippocampus and surrounding regions. The male placenta showed an initial protective increase in allopregnanolone concentrations in response to maternal psychosocial stress. The male and female placentae had a sex-dependent increase in neurosteroidogenic enzymes at term following prenatal stress. Independent from exposure to prenatal stress, at gestational day 60 - a critical period for myelin development, the placentae of female fetuses had increased capability of preventing cortisol transfer to the fetus through expression of 11-beta-hydroxysteroid dehydrogenase type 1 and 2. Conclusion: The deficits early in the process of maturation of myelination indicates that the reduced myelination observed at childhood equivalence in previous studies begins in fetal life. This negative programming persists into childhood potentially due to dysregulation of MBP translation processes. Expression patterns of neurosteroidogenic enzymes in the placenta at term following stress may identify at-risk fetuses that have been exposed to a stressful in utero environment.
DOI: 10.6084/m9.figshare.22427863.v1
title: Supplementary Material for: Prenatal stress induces translational disruption associated with myelination deficits

description: Background: Disruptions to neurodevelopment is known to be linked to behavioural disorders in childhood and into adulthood. The fetal brain is extremely vulnerable to stimuli that alter inhibitory GABAergic pathways and critical myelination processes programming long-term neurobehavioural disruption. The maturation of the GABAergic system into the major inhibitory pathway in the brain, and the development of oligodendrocytes into mature cells capable of producing myelin are integral components of optimal neurodevelopment. The current study aimed to elucidate prenatal stress-induced mechanisms that disrupt these processes, and to delineate the role of placental pathways in these adverse outcomes. Methods: Pregnant guinea pig dams were exposed prenatal stress with strobe light exposure for 2hrs/day on gestational age (GA) 35, 40, 45, 50, 55, 60 and 65, and groups of fetuses and placentae were collected after the stress exposure on GA40, GA50, GA60 and GA69 (term). Fetal plasma, placental and brain tissue were collected for allopregnanolone and cortisol quantification with ELISA. Relative mRNA expression of genes of specific pathways of interest were examined with real-time PCR in placental and hippocampal tissue, and myelin basic protein (MBP) was quantified immunohistochemically in the hippocampus and surrounding regions for assessment of mature myelin. Results: Prenatal stress in mid-late gestation resulted in disruptions to the translational machinery responsible for the production of myelin, and decreased myelin coverage in the hippocampus and surrounding regions. The male placenta showed an initial protective increase in allopregnanolone concentrations in response to maternal psychosocial stress. The male and female placentae had a sex-dependent increase in neurosteroidogenic enzymes at term following prenatal stress. Independent from exposure to prenatal stress, at gestational day 60 - a critical period for myelin development, the placentae of female fetuses had increased capability of preventing cortisol transfer to the fetus through expression of 11-beta-hydroxysteroid dehydrogenase type 1 and 2. Conclusion: The deficits early in the process of maturation of myelination indicates that the reduced myelination observed at childhood equivalence in previous studies begins in fetal life. This negative programming persists into childhood potentially due to dysregulation of MBP translation processes. Expression patterns of neurosteroidogenic enzymes in the placenta at term following stress may identify at-risk fetuses that have been exposed to a stressful in utero environment.
DOI: 10.6084/m9.figshare.22652080.v1
title: Supplementary Material for: The role of brain integrity in the association between occupational complexity and cognitive performance in subjects with increased risk of dementia

description: Introduction: Mechanisms underlying the positive association between occupational mental demands and late-life cognition are poorly understood. The objective of this study was to assess whether the association between occupational complexity and cognition is related to and moderated by brain integrity in individuals at-risk for dementia. Brain integrity was appraised throughout structural measures (Magnetic Resonance Imaging, MRI) and amyloid accumulation (Pittsburgh Compound B (PiB)-positron emission tomography, PiB-PET). Methods: Participants from the Finnish Geriatric Intervention Study to Prevent Cognitive Impairment and Disability (FINGER) neuroimaging sample -MRI (N=126), PiB-PET (N=41)- were included in a post-hoc cross-sectional analysis. Neuroimaging parameters comprised the Alzheimer´s Disease signature cortical thickness (ADS, Freesurfer 5.3), medial temporal atrophy (MTA), and amyloid accumulation (PiB-PET). Cognition was assessed using the Neuropsychological Test Battery. Occupational complexity with data, people, and substantive complexity were classified through the Dictionary of Occupational Titles. Linear regression models included cognition as dependent variable, occupational complexity, measures of brain integrity, and their interaction terms as predictors. Results: Occupational complexity with data and substantive complexity were associated with better cognition (overall cognition, executive function) when adjusting for ADS and MTA (independent association). Significant interaction effects between occupational complexity and brain integrity were also found, indicating that, for some indicators of brain integrity and cognition (e.g., overall cognition, processing speed), the positive association between occupational complexity and cognition occurred only among persons with higher brain integrity (moderated association). Conclusion: Among individuals at-risk for dementia, occupational complexity does not seem to contribute towards resilience against neuropathology. These exploratory findings require validation in larger populations.