cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h9w0vt4f6
title: Singing under glass: rapid effects of anthropogenic habitat modification on song and response behaviours in an isolated house sparrow (Passer domesticus) population

description: Anthropogenic noise pollution and the introduction of novel infrastructure
 can impose strong selective pressures on avian communication by affecting
 the efficacy with which acoustic signals are transmitted and received.
 Many species have now been shown to sing at higher frequencies in noisy
 urban environments. However, few studies have investigated the effects of
 signal modification on the response behaviours of receivers, and fewer
 still have been able to indicate the timescale over which these changes in
 pitch have occurred. We compare vocal communication between house sparrows
 (Passer domesticus) that reside within the world’s largest, single-span
 glasshouse (completed in the year 2000), and house sparrows directly
 outside this glasshouse, in open farmland. The glasshouse contrasts both
 acoustically and physically with the external environment, low frequency
 background noise being significantly louder inside than outside. We show
 that minimum song frequency was significantly higher inside the glasshouse
 than in surrounding farm habitat. Using song playback, we also found that
 birds within the glasshouse reacted more strongly to playbacks from the
 glasshouse habitat than they did to playback of song from farm birds
 outside. The degree of difference in frequency is similar to that shown
 for other bird species between urban and rural environments, demonstrating
 that such behavioural differences may arise over a relatively short time
 period (14 years in this case)
DOI: 10.5061/dryad.rxwdbrv4s
title: Helpers compensate for age-related declines in parental care and offspring survival in a cooperatively breeding bird

description: Offspring from elderly parents often have lower survival due to parental
 senescence. In cooperatively breeding species, where offspring care is
 shared between breeders and helpers, the alloparental care provided by
 helpers is predicted to mitigate the impact of parental senescence on
 offspring provisioning and, subsequently, offspring survival. We test this
 prediction using data from a long-term study on cooperatively breeding
 Seychelles warblers (Acrocephalus sechellensis). We find that the
 nestling-provisioning rate of female breeders declines with their age.
 Further, the total brood provisioning rate and the first-year survival
 probability of offspring decline progressively with age of the female
 breeder, but these declines are mitigated when helpers are present. This
 effect does not arise because individual helpers provide more care in
 response to the lower provisioning of older dominant females, but because
 older female breeders have recruited more helpers, thereby receiving more
 overall care for their brood. We do not find such effects for male
 breeders. These results indicate that alloparental care can alleviate the
 fitness costs of senescence for breeders, which suggests an interplay
 between age and cooperative breeding.
description: Data were obtained from the long term dataset on Seychelles
 warblers on Cousin Island. See the manuscript for further
 details.
description: Methodological details are provided in the article. All variable
 names are self-explanatory.
DOI: 10.5061/dryad.cz8w9gj0j
title: Trait means predict performance under water limitation better than plasticity for seedlings of Poaceae species on the eastern Tibetan Plateau

description: Water availability may be altered by changes in precipitation under global
 climate change in alpine areas. Trait means and plasticity are important
 for plants in response to a changing environment. In an examination of
 alpine plant responses to changed water availability, and for
 determination of how trait means and plasticity predict the performance
 (e.g., biomass) of these species, seeds of ten Poaceae species from the
 eastern Tibetan Plateau were sown and grown in a manipulated environment
 during a growing season in which rainfall was removed and other climate
 conditions remained unchanged. Growth and leaf traits of these species
 were measured. We found significant effects of moderate water stress on
 the seedling biomass of these species; however, the responses of these
 species to changed water condition were strongly dependent on species
 identity. For example, the biomass of some species significantly decreased
 under moderate drought, whereas that of others were either significantly
 increased or unaffected. This pattern was also observed for growth and
 leaf traits. Overall, the alpine Poaceae species showed low plasticity of
 traits in response to water availability relative to reports from other
 areas. Notably, the results show that trait means were better correlated
 with the productivity than with the plasticity of traits; thus, we argue
 that the trait means were better predictors of performance than plasticity
 for alpine Poaceae species. Poaceae species in alpine areas are important
 for forage production and for water catchment health worldwide, and these
 species may face water shortage because of current and future climate
 change. Understanding the response of alpine Poaceae species to water
 availability would facilitate our ability to predict the impacts of
 climate change on the alpine vegetation.
description: The raw data of ECE-2019-03-00382.R3 The
 species name and mean of Biomass, Root shoot ratio (R:S), Relative growth
 rate (RGR), shoot height (height), leaf area (LA), Relative leaf water
 content (RLWC), Specific leaf area (SLA), Photosynthetic
 rate, Transpiration rate for each species under both treatment
 (well-watered and moderate-drought) in our study were listed.
 EE_Data.csv
DOI: 10.5281/zenodo.18377384
title: CMI_Brand7_10F_2_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 10F SC sample 2 CMI   - EDLC Single - Brand7

Part of the Constant Temperature DataBase
DOI: 10.5281/zenodo.18377383
title: CMI_Brand7_10F_2_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 10F SC sample 2 CMI   - EDLC Single - Brand7

Part of the Constant Temperature DataBase
DOI: 10.15468/dl.9n8k5p
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acmispon junceus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 229 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002191-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d8gcw
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampanyctodes hectoris",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 27 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002193-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/qlfbvv
title: Data Management and Sharing Plan for: Gen-AI Airway Simulator for 3D Endoscopy

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.5061/dryad.d51c59zzf
title: Fishing for mammals: landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from lotic ecosystems

description: 1.  Environmental DNA (eDNA) metabarcoding has revolutionised
 biomonitoring in both marine and freshwater ecosystems. However, for
 semi-aquatic and terrestrial animals, the application of this technique
 remains relatively untested. 2.  We first assess the efficiency
 of eDNA metabarcoding in detecting semi-aquatic and terrestrial mammals in
 natural lotic ecosystems in the UK by comparing sequence data recovered
 from water and sediment samples to the mammalian communities expected from
 historical data. Secondly, using occupancy modelling we compared the
 detection efficiency of eDNA metabarcoding to multiple conventional
 non-invasive survey methods (latrine surveys and camera trapping). 3. eDNA
 metabarcoding detected a large proportion of the expected mammalian
 community within each area. Common species in the areas were detected at
 the majority of sites. Several key species of conservation concern in the
 UK were detected by eDNA sampling in areas where authenticated records do
 not currently exist, but potential false positives were also identified.
 4. Water-based eDNA metabarcoding provided comparable results to
 conventional survey methods in per unit of survey effort for three species
 (water vole, field vole, and red deer) using occupancy models. The
 comparison between survey ‘effort’ to reach a detection probability of
 ≥0.95 revealed that 3-6 water replicates would be equivalent to 3-5
 latrine surveys and 5-30 weeks of single camera deployment, depending on
 the species. 5. Synthesis and Applications. eDNA metabarcoding can be used
 to generate an initial ‘distribution map’ of mammalian diversity at the
 landscape level. If conducted during times of peak abundance, carefully
 chosen sampling points along multiple river courses provide a reliable
 snapshot of the species that are present in a catchment area. In order to
 fully capture solitary, rare and invasive species, we would currently
 recommend the use of eDNA metabarcoding alongside other non-invasive
 surveying methods (i.e. camera traps) to maximize monitoring efforts.
DOI: 10.5061/dryad.2280gb5np
title: Microhabitat contributes to microgeographic divergence in threespine stickleback

description: Since the New Synthesis, most migration-selection balance theory predicted
 that there should be negligible differentiation over small spatial scales
 (relative to dispersal), because gene flow should erode any effect of
 divergent selection. Nevertheless, there are classic examples of
 microgeographic divergence, which theory suggests can arise under specific
 conditions: exceptionally strong selection, phenotypic plasticity in
 philopatric individuals, or non-random dispersal. Here, we present
 evidence of microgeographic morphological variation within lake and stream
 populations of threespine stickleback (Gasterosteus aculeatus). It seems
 reasonable to assume, and most researchers have, that a given lake or
 stream population of fish is well-mixed. However, we found this assumption
 to be untenable. We examined trap-to-trap variation in 34 morphological
 traits measured on stickleback from 16 lakes and 16 streams. Most traits
 varied appreciably among traps within populations. Both
 between-trap distance and microhabitat characteristics like depth and
 substrate explained some of the within-population morphological
 variance. Microhabitat was also associated with genotype at
 particular loci but there was no genetic isolation by distance, implying
 that heritable habitat preferences may contribute to microgeographic
 variation. Our study adds to growing evidence that microgeographic
 divergence can occur across small spatial scales within individuals’ daily
 dispersal neighborhood where gene flow is expected to be strong. 
description: See README file
DOI: 10.5061/dryad.tmpg4f4vh
title: Major inconsistencies of inferred population genetic structure estimated in a large set of domestic horse breeds using microsatellites

description: STRUCTURE remains the most applied tool aimed at recovering the true, but
 unknown, population structure from observed microsatellite data or other
 genetic markers. About 30% of STRUCTURE-based studies could not be
 reproduced (Gilbert et al., 2012). Here we use a large set of data from
 2323 horses from 93 domestic breeds plus the Przewalski horse, typed at 15
 microsatellite markers, to evaluate how program settings, in particular
 the so far insufficiently evaluated number of replicates, impact the
 estimation of the optimal number of population clusters Kopt that best
 describe the observed data. Domestic horses are suited as a test case as
 there is extensive knowledge of the history of many breeds, extensive
 phylogenetic analyses. Different methods based on different genetic
 assumptions and statistical procedures (DAPC, FLOCK, PCoA and STRUCTURE
 with different run scenarios) all revealed the general, broad-scale
 relationships among the breeds that largely reflect known breed histories
 but diverged largely how they characterized small-scale patterns.
 STRUCTURE failed to consistently identify Kopt using the most widespread
 approach, the ΔK method, despite very large numbers of MCMCs (3,000,000)
 and replicates (100). The interpretation of breed structure over
 increasing numbers of K, without assuming a Kopt, was consistent with
 known breed histories. The over-reliance on Kopt should be replaced by a
 qualitative description of clustering over increasing K, which is
 scientifically more honest and has the advantage of being much faster and
 less computer intensive as lower numbers of MCMC iterations and
 repetitions suffice for stable results. Very large data sets are highly
 challenging for cluster analyses, especially when populations with complex
 genetic histories are investigated.
description: Samples collected during long-term studies on horse genetics. 15
 autosomal microsatellite markers distributed on 14 chromosomes, from
 marker panels that are recomended for diversity studies fy ISAG-FAO and
 International Society for Animal Genetics.
DOI: 10.5061/dryad.vmcvdncpn
title: Data from: Honey bees and neonicotinoid-treated corn seed: contamination, exposure, and effects

description: Most corn (Zea mays) seeds planted in the US in recent years are coated
 with a seed treatment containing neonicotinoid insecticides. Abrasion of
 the seed coating generates insecticide-laden planter dust that disperses
 through the landscape during corn planting and has resulted in many
 ‘bee-kill’ incidents in North America and Europe. We investigated the
 linkage between corn planting and honey bee colony success in a region
 dominated by corn agriculture. Over three years we consistently observed
 an increased presence of corn seed treatment insecticides in bee-collected
 pollen and elevated worker bee mortality during corn planting. Residues of
 seed treatment neonicotinoids, clothianidin and thiamethoxam, detected in
 pollen positively correlated with cornfield area surrounding the apiaries.
 Elevated worker mortality was also observed in experimental colonies fed
 field-collected pollen containing known concentrations of corn seed
 treatment insecticides. We monitored colony growth throughout the
 subsequent year in 2015 and found that colonies exposed to higher
 insecticide concentrations exhibited slower population growth during the
 month of corn planting, but demonstrated more rapid growth in the month
 following, though this difference may be related to forage availability.
 Exposure to seed treatment neonicotinoids during corn planting has clear
 short-term detrimental effects on honey bee colonies and may affect the
 viability of beekeeping operations that are dependent on maximizing colony
 size in the springtime.
DOI: 10.5061/dryad.573n5tb43
title: Information transfer efficiency differs in wild chimpanzees and bonobos, but not social-cognition

description: Several theories have been generated to understand the socio-cognitive
 mechanisms underlying the unique cooperative abilities of humans. The
 “interdependence hypothesis” posits that the cognitive dimension of human
 cooperation evolved in contexts when several individuals needed to
 collaborate to achieve a common goal and that more interdependent
 individuals are more likely to cooperate (provide services to
 conspecifics) in non-collaborative contexts. Alternatively, the “social
 tolerance hypothesis” proposes that higher social tolerance allows
 conspecifics to cooperate more efficiently and with a wider range of
 partners. We conducted the first field experimental evaluation of both
 hypotheses in our closest living relatives by contrasting chimpanzees to
 the less interdependent but more tolerant bonobos. We compared each
 species’ performance during a non-collaborative cooperative task:
 informing conspecifics about a danger. We presented Gaboon viper models to
 82 individuals from 5 wild communities. Chimpanzees arriving late at the
 snake were significantly more likely to have heard a call and less likely
 to startle, indicating that chimpanzees were better informed about the
 presence of the threat than bonobos. This stems from clear species
 differences in how individuals adjusted their calling decisions to the
 level of information already available. Chimpanzees were more likely to
 call and produced more alarm calls when they had not yet heard a call,
 whereas bonobos did so when they already heard a call. Our results confirm
 the link between interdependence and cooperation performance. These
 species differences were most likely driven by differences in motivation
 rather than in cognitive capacities since both species tended to consider
 audience knowledge in their decision to call. Our results inform theories
 on the evolution of human cooperation by linking inter-group competition
 pressure and in-group cooperative motivation and/or capability.
DOI: 10.5061/dryad.c866t1g3m
title: Anthropogenic and natural barriers affect genetic connectivity in an Alpine butterfly

description: Dispersal is a key biological process serving several functions including
 connectivity among populations. Habitat fragmentation caused by natural or
 anthropogenic structures may hamper dispersal, thereby disrupting genetic
 connectivity. Investigating factors affecting dispersal and gene flow is
 important in the current era of anthropogenic global change, as dispersal
 comprises a vital part of a species’ resilience to environmental change.
 Using fine-scale landscape genomics, we investigate gene flow and genetic
 structure of the Sooty Copper butterfly (Lycaena tityrus) in the Alpine
 Ötz valley system in Austria. We show surprisingly high levels of gene
 flow in L. tityrus across the region. Nevertheless, ravines, forests and
 roads had effects on genetic structure, although rivers did not. The
 latter is surprising as roads and rivers have a similar width and run
 largely in parallel in our study area, pointing towards a higher impact of
 anthropogenic compared with natural linear structures. Additionally, we
 detected eleven loci potentially under thermal selection, including ones
 related to membranes, metabolism, and immune function. This study
 demonstrates the usefulness of molecular approaches in obtaining estimates
 of dispersal and population processes in the wild. Our results suggest
 that, despite high gene flow in the Alpine valley system investigated, L.
 tityrus nevertheless seems to be vulnerable to anthropogenically-driven
 habitat fragmentation. With anthropogenic rather than natural linear
 structures affecting gene flow, this may have important consequences for
 the persistence of species such as the butterfly studied here in altered
 landscapes.
description: SNPs were called using a de novo pipeline without a reference
 genome. We used the <i>process_radtags</i> program within
 stacks
 version 2.3 (Catchen, Hohenlohe, Bassham, Amores, & Cresko, 2013;
 Catchen, Amores, Hohenlohe, Cresko, & Postlethwait, 2011) to
 demultiplex the sequence data. This separated individuals by their unique
 barcode, removed adapter sequences, trimmed the reads to 120 bp length,
 and discarded low-quality reads (Phred score &lt; 20). We then ran the
 stacks
 <i>denovo_map</i> pipeline using one individual per outgroup
 and 26 individuals from the Ötz valley system to generate a catalogue of
 loci. Each of the 186 individuals was then matched against this catalogue
 and SNPs were subsequently called. We filtered the data to retain SNPs
 which were present in more than 50% of the 186 individuals, and then
 retained the first SNP in each ddRAD locus. Further filtering with the
 program vcftools
 version 0.1.11 (Danecek et al., 2011) was done to retain loci that were at
 Hardy-Weinberg equilibrium, had a minor allele count of &gt; 2,
 missing data of &lt; 5%, and mean depth of 20-45. The final dataset
 contained 12,806 SNPs for analyses of relatedness, genetic structure, and
 outlier loci.
DOI: 10.6078/d18q4h
title: Velocity field of Jupiter's Great Red Spot in December 2016

description: Hubble Space Telescope (HST) data acquired around 2016-12-11 16:00 UT were
 used to measure the velocity field of Jupiter's Great Red Spot. The
 Hubble dataset is described in Tollefson et al. (2017) and Wong (2017),
 and the velocity extraction was performed with the ACCIV method described
 in Asay-Davis et al. (2009). A small subset of the resulting gridded
 velocity field is shown in a paper discussing small-scale waves observed
 with Juno's JunoCam imager (Orton et al. 2020), to compare the local
 wind field from the HST data with small-scale waves observed in JunoCam
 image 114. The velocity field that is shown in Fig. 6 of Orton et al.
 (2020) is an excerpt from the larger velocity field presented here.
description: Short timesteps (45 min.) had to be used to be used
 for Fig. 6 of Orton et al. (2020), because strong turbulence in this
 region means that cloud tracers may not be coherent over a full Jupiter
 rotation (about 10 hrs). For studies of the Great Red
 Spot itself, this velocity field is not ideal because it does not use
 long-time separated data (i.e., 10-hr separations; see Asay-Davis et al.
 2009). The mean (over the full velocity field)
 1-sigma correlation uncertainty error is 17 m/s.
description: Data file is in the HDF5 format. It contains the following
 elements: <pre style="margin-left:40px;"> bounds
 Dataset {4} dataX Dataset {701, 1401} dataY Dataset {701, 1401} vx Dataset
 {701, 1401} vy Dataset {701, 1401}</pre> bounds - values
 are max west longitude (System III), min west longitude, min latitude
 (planetographic), max latitude. These bounds are used to define the
 regularly-gridded coordinates of the velocity data. Positions step in
 (e.g. for longitude) 1401 evenly-divided steps from 30 deg W to -40 deg W,
 inclusive (so, 0.05-deg steps). <strong>dataX -
 </strong>not used (relic of older format)
 <strong>dataY -</strong> not used (relic of older
 format) <strong>vx - </strong>velocity in
 units of m/s. Positive values are eastward.
 <strong>vy -</strong> velocity in units of m/s.
 Positive values are northward.