cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12096639
title: Additional file 3 of Bioinformatic prospecting and phylogenetic analysis reveals 94 undescribed circular bacteriocins and key motifs

description: Additional file 3: Figure S3. Raw data of hydrophobicity scores from each bacteriocin.
DOI: 10.6084/m9.figshare.12096639.v1
title: Additional file 3 of Bioinformatic prospecting and phylogenetic analysis reveals 94 undescribed circular bacteriocins and key motifs

description: Additional file 3: Figure S3. Raw data of hydrophobicity scores from each bacteriocin.
DOI: 10.6084/m9.figshare.12096627
title: Additional file 1 of Bioinformatic prospecting and phylogenetic analysis reveals 94 undescribed circular bacteriocins and key motifs

description: Additional file 1: Figure S1. Table containing further, detailed information of each circular bacteriocin.
DOI: 10.6084/m9.figshare.12096627.v1
title: Additional file 1 of Bioinformatic prospecting and phylogenetic analysis reveals 94 undescribed circular bacteriocins and key motifs

description: Additional file 1: Figure S1. Table containing further, detailed information of each circular bacteriocin.
DOI: 10.6084/m9.figshare.12863558
title: mm9

description: desd
DOI: 10.6084/m9.figshare.12863558.v1
title: mm9

description: desd
DOI: 10.6084/m9.figshare.12096564
title: Gui et al 2020 Environment International

description: <i>Figure creation for the manuscript titled as "Construction of a virtual PM<sub>2.5</sub> observation network in China Based on high-density surface meteorological observations using the Extreme Gradient Boosting model" for Environment International by Gui et al., 2020<br><br></i>
DOI: 10.6084/m9.figshare.12096564.v1
title: Gui et al 2020 Environment International

description: <i>Figure creation for the manuscript titled as "Construction of a virtual PM<sub>2.5</sub> observation network in China Based on high-density surface meteorological observations using the Extreme Gradient Boosting model" for Environment International by Gui et al., 2020<br><br></i>
DOI: 10.6084/m9.figshare.12096555
title: Additional file 3 of Enhanced identification of significant regulators of gene expression

description: Additional file 3. Identifiers for TCGA datasets on prostate cancer as downloaded from the GDC data portal.
DOI: 10.6084/m9.figshare.12096555.v1
title: Additional file 3 of Enhanced identification of significant regulators of gene expression

description: Additional file 3. Identifiers for TCGA datasets on prostate cancer as downloaded from the GDC data portal.
DOI: 10.6084/m9.figshare.12096546
title: Additional file 7 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 7: Table S3. Measurements of the tissue origins of cfDNA in the healthy state between three studies. Description of data: A comparison of tissue contributions between the present study with 2 other studies in human based on tissue-specific methylation pattern by Sun et al. [21] and Moss et al. [23].
DOI: 10.6084/m9.figshare.12096546.v1
title: Additional file 7 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 7: Table S3. Measurements of the tissue origins of cfDNA in the healthy state between three studies. Description of data: A comparison of tissue contributions between the present study with 2 other studies in human based on tissue-specific methylation pattern by Sun et al. [21] and Moss et al. [23].
DOI: 10.6084/m9.figshare.12096549
title: Additional file 2 of Enhanced identification of significant regulators of gene expression

description: Additional file 2. Gene sets used for enrichment analysis.
DOI: 10.6084/m9.figshare.12096543
title: Additional file 1 of Enhanced identification of significant regulators of gene expression

description: Additional file 1. Gene lists with PubMed statistics.
DOI: 10.6084/m9.figshare.12096543.v1
title: Additional file 1 of Enhanced identification of significant regulators of gene expression

description: Additional file 1. Gene lists with PubMed statistics.
DOI: 10.6084/m9.figshare.12096549.v1
title: Additional file 2 of Enhanced identification of significant regulators of gene expression

description: Additional file 2. Gene sets used for enrichment analysis.
DOI: 10.6084/m9.figshare.12096531
title: Additional file 4 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 4 Table S2. Primer pairs and probes for amplification of liver and non-liver DNA fragments using methylation ddPCR. Description of data: Amplification of liver and non-liver DNA fragments was performed as previously described [37].
DOI: 10.6084/m9.figshare.12096528
title: Additional file 3 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 3: Table S1. Oligonucleotides for amplification of 1lox and 2lox mT/mG gene. Description of data: 1lox assay consisted of mTmGF1, mTmGR and mTmGP. 2lox assay consisted of mTmGF2, mTmGR, mTmGP. FAM: 6-carboxyfluorescein; BHQ: black hole quencher. Amplicon length for 1lox and 2lox assays are 124 bp. (XLS 25 kb)
DOI: 10.6084/m9.figshare.12096528.v1
title: Additional file 3 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 3: Table S1. Oligonucleotides for amplification of 1lox and 2lox mT/mG gene. Description of data: 1lox assay consisted of mTmGF1, mTmGR and mTmGP. 2lox assay consisted of mTmGF2, mTmGR, mTmGP. FAM: 6-carboxyfluorescein; BHQ: black hole quencher. Amplicon length for 1lox and 2lox assays are 124 bp. (XLS 25 kb)
DOI: 10.6084/m9.figshare.12096531.v1
title: Additional file 4 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 4 Table S2. Primer pairs and probes for amplification of liver and non-liver DNA fragments using methylation ddPCR. Description of data: Amplification of liver and non-liver DNA fragments was performed as previously described [37].
DOI: 10.6084/m9.figshare.12096513
title: Additional file 1 of Efficacy data of halogenated phenazine and quinoline agents and an NH125 analogue to veterinary mycoplasmas

description: Additional file 1.
DOI: 10.6084/m9.figshare.12096504
title: Additional file 11 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 11: Table S4. Measurements of serum biomarkers from APAP overdose patients and healthy volunteers. Description of data: Normal range for serum biomarker [45, 46]: Bilirubin (2–17 μmol/l), ALT (0–45 IU/l), AST (0–35 IU/l), ALP (30–120 IU/l), ALB/Albumin (40–60 g/l), GLDH (1–10 IU/l).
DOI: 10.6084/m9.figshare.12096510
title: Additional file 12 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 12: Table S5. Comparison of biomarkers in APAP overdose patients before and after treatment with NAC Description of data: Total cfDNA was measured using a single-locus qPCR of the human beta-actin gene (ACTB). The normal range for serum ALT is 0–45 IU/l.
DOI: 10.6084/m9.figshare.12096504.v1
title: Additional file 11 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 11: Table S4. Measurements of serum biomarkers from APAP overdose patients and healthy volunteers. Description of data: Normal range for serum biomarker [45, 46]: Bilirubin (2–17 μmol/l), ALT (0–45 IU/l), AST (0–35 IU/l), ALP (30–120 IU/l), ALB/Albumin (40–60 g/l), GLDH (1–10 IU/l).
DOI: 10.6084/m9.figshare.12096513.v1
title: Additional file 1 of Efficacy data of halogenated phenazine and quinoline agents and an NH125 analogue to veterinary mycoplasmas

description: Additional file 1.
DOI: 10.6084/m9.figshare.12096510.v1
title: Additional file 12 of Absolute measurement of the tissue origins of cell-free DNA in the healthy state and following paracetamol overdose

description: Additional file 12: Table S5. Comparison of biomarkers in APAP overdose patients before and after treatment with NAC Description of data: Total cfDNA was measured using a single-locus qPCR of the human beta-actin gene (ACTB). The normal range for serum ALT is 0–45 IU/l.
DOI: 10.6084/m9.figshare.12096438
title: Additional file 7 of The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection

description: Additional file 7. Unrarefied operational taxonomic unit table (with genus taxonomic assignments) used for this study.
DOI: 10.6084/m9.figshare.12096435
title: Additional file 6 of The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection

description: Additional file 6. Metadata associated with all samples used in this study.
DOI: 10.6084/m9.figshare.12096438.v1
title: Additional file 7 of The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection

description: Additional file 7. Unrarefied operational taxonomic unit table (with genus taxonomic assignments) used for this study.
DOI: 10.6084/m9.figshare.12096435.v1
title: Additional file 6 of The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection

description: Additional file 6. Metadata associated with all samples used in this study.
DOI: 10.25810/v575-3r57.21
title: Japanese Newspaper Coverage of Climate Change or Global Warming, 2000-2020 - July 2020

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.12096396
title: Additional file 1 of Landscape of copy number aberrations in esophageal squamous cell carcinoma from a high endemic region of South Africa

description: Additional file 1. Supplementary Table 1. Table of all gains detected by GISTIC 2.0. Supplementary Table 2. Table of deletions detected by GISTIC 2.0
DOI: 10.6084/m9.figshare.12096396.v1
title: Additional file 1 of Landscape of copy number aberrations in esophageal squamous cell carcinoma from a high endemic region of South Africa

description: Additional file 1. Supplementary Table 1. Table of all gains detected by GISTIC 2.0. Supplementary Table 2. Table of deletions detected by GISTIC 2.0
DOI: 10.6084/m9.figshare.12096375
title: Additional file 2 of Adipose stem cells from patients with Crohn’s disease show a distinctive DNA methylation pattern

description: Additional file 2. Supplementary file 2.
DOI: 10.6084/m9.figshare.12096369
title: Additional file 1 of Adipose stem cells from patients with Crohn’s disease show a distinctive DNA methylation pattern

description: Additional file 1. Supplementary file 1.
DOI: 10.6084/m9.figshare.12096375.v1
title: Additional file 2 of Adipose stem cells from patients with Crohn’s disease show a distinctive DNA methylation pattern

description: Additional file 2. Supplementary file 2.
DOI: 10.6084/m9.figshare.12096369.v1
title: Additional file 1 of Adipose stem cells from patients with Crohn’s disease show a distinctive DNA methylation pattern

description: Additional file 1. Supplementary file 1.
DOI: 10.5281/zenodo.4000350
title: data artifact for "Keeping It Real: Why HPC Data Services Don't Achieve I/O Microbenchmark Performance"

description: This is the data artifact associated with the PDSW 20 workshop paper submission entitled "Keeping It Real: Why HPC Data Services Don’t Achieve I/O Microbenchmark Performance" in accordance with the PDSW 20 artifact submission guidelines.
DOI: 10.5281/zenodo.4000349
title: data artifact for "Keeping It Real: Why HPC Data Services Don't Achieve I/O Microbenchmark Performance"

description: This is the data artifact associated with the PDSW 20 workshop paper submission entitled "Keeping It Real: Why HPC Data Services Don’t Achieve I/O Microbenchmark Performance" in accordance with the PDSW 20 artifact submission guidelines.
DOI: 10.6084/m9.figshare.12096333
title: Additional file 3 of Accountability strategies for sexual and reproductive health and reproductive rights in humanitarian settings: a scoping review

description: Additional file 3: Online Annex C: SRH in AAP documents
DOI: 10.6084/m9.figshare.12096327
title: Additional file 2 of Accountability strategies for sexual and reproductive health and reproductive rights in humanitarian settings: a scoping review

description: Additional file 2: Online Annex B: Accountability for SRH in humanitarian settings
DOI: 10.6084/m9.figshare.12096327.v1
title: Additional file 2 of Accountability strategies for sexual and reproductive health and reproductive rights in humanitarian settings: a scoping review

description: Additional file 2: Online Annex B: Accountability for SRH in humanitarian settings
DOI: 10.6084/m9.figshare.12096333.v1
title: Additional file 3 of Accountability strategies for sexual and reproductive health and reproductive rights in humanitarian settings: a scoping review

description: Additional file 3: Online Annex C: SRH in AAP documents
DOI: 10.6084/m9.figshare.12096198
title: Additional file 2 of Use of meat juice and blood serum with a miniaturised protein microarray assay to develop a multi-parameter IgG screening test with high sample throughput potential for slaughtering pigs

description: Additional file 2. Measured microarray raw data from the ArrayTube and the ArrayStrip platform in laboratory A and measured microarray raw data on the ArrayStrip platform in laboratories B and C.
DOI: 10.6084/m9.figshare.12096189
title: Additional file 1 of Use of meat juice and blood serum with a miniaturised protein microarray assay to develop a multi-parameter IgG screening test with high sample throughput potential for slaughtering pigs

description: Additional file 1. Results of ROC analysis for ArrayTube with meat juice and ArrayStrip with meat juice and serum for all tested antigens in all tested antigen concentrations. Cut-offs were set at the maximum Youden Index.
DOI: 10.6084/m9.figshare.12096198.v1
title: Additional file 2 of Use of meat juice and blood serum with a miniaturised protein microarray assay to develop a multi-parameter IgG screening test with high sample throughput potential for slaughtering pigs

description: Additional file 2. Measured microarray raw data from the ArrayTube and the ArrayStrip platform in laboratory A and measured microarray raw data on the ArrayStrip platform in laboratories B and C.
DOI: 10.6084/m9.figshare.12096189.v1
title: Additional file 1 of Use of meat juice and blood serum with a miniaturised protein microarray assay to develop a multi-parameter IgG screening test with high sample throughput potential for slaughtering pigs

description: Additional file 1. Results of ROC analysis for ArrayTube with meat juice and ArrayStrip with meat juice and serum for all tested antigens in all tested antigen concentrations. Cut-offs were set at the maximum Youden Index.
DOI: 10.6084/m9.figshare.12096156
title: Additional file 5 of The barley stripe mosaic virus expression system reveals the wheat C2H2 zinc finger protein TaZFP1B as a key regulator of drought tolerance

description: Additional file 5: Table S2. List of genes down-regulated by TaZFP1B overexpression.
DOI: 10.6084/m9.figshare.12096156.v1
title: Additional file 5 of The barley stripe mosaic virus expression system reveals the wheat C2H2 zinc finger protein TaZFP1B as a key regulator of drought tolerance

description: Additional file 5: Table S2. List of genes down-regulated by TaZFP1B overexpression.
DOI: 10.6084/m9.figshare.12096147
title: Additional file 3 of The barley stripe mosaic virus expression system reveals the wheat C2H2 zinc finger protein TaZFP1B as a key regulator of drought tolerance

description: Additional file 3: Table S1. List of genes up-regulated by TaZFP1B overexpression.
DOI: 10.6084/m9.figshare.12096147.v1
title: Additional file 3 of The barley stripe mosaic virus expression system reveals the wheat C2H2 zinc finger protein TaZFP1B as a key regulator of drought tolerance

description: Additional file 3: Table S1. List of genes up-regulated by TaZFP1B overexpression.
DOI: 10.6084/m9.figshare.12096000
title: Raw Data-Transcriptome of Salix oritrepha under drought stress

description: Raw Data-Comparative transcriptome analysis of <i>Salix oritrepha </i>under drought stress.<br>
DOI: 10.6084/m9.figshare.12096000.v1
title: Raw Data-Transcriptome of Salix oritrepha under drought stress

description: Raw Data-Comparative transcriptome analysis of <i>Salix oritrepha </i>under drought stress.<br>
DOI: 10.6084/m9.figshare.12095982
title: Supplementary Material for: Association between Vitamin D Level and Muscle Strength in Patients Undergoing Hemodialysis

description: <b><i>Introduction:</i></b> Identification of the risk factors and treatment of the decrease in muscle mass or strength are important to improve the prognosis of patients undergoing hemodialysis (HD). Previous studies have investigated the association between vitamin D level and muscle mass or strength in patients undergoing HD. However, there are conflicting results regarding this association. <b><i>Objective:</i></b> To evaluate the association between vitamin D level and muscle mass indices, strength, or physical performance in patients undergoing HD. <b><i>Methods:</i></b> This study was performed in a tertiary medical center. We included patients undergoing HD aged ≥20 years. A total of 84 patients were enrolled. The patients were divided into tertiles based on the 25-hydroxy (25-OH) vitamin D level as follows: lowest tertile (Lowest T, <i>n</i> = 28), middle tertile (Middle T, <i>n</i> = 28), and highest tertile (Highest T, <i>n</i> = 28). We evaluated the association between the tertiles and clinical outcomes including nutritional status, muscle mass, muscle function, handgrip strength (HGS), physical performance, and health-related quality of life (HRQoL) scales. <b><i>Results:</i></b> There were no significant differences in the muscle mass indices and nutritional markers according to tertiles of 25-OH vitamin D level. However, 25-OH vitamin D level as a continuous variable or the tertile of 25-OH vitamin D level as a categorical variable was positively associated with HGS. Logistic and linear regression analyses showed a consistent superiority of the Highest T in HGS compared with the Lowest or Middle T. Although the statistical significance was weak, the scores of various physical performance tests and the HRQoL scales were highest in the Highest T among the 3 tertiles. <b><i>Conclusion:</i></b> The present study demonstrated that serum vitamin D level is associated with HGS in patients undergoing HD regardless of muscle mass indices or nutritional status.
DOI: 10.6084/m9.figshare.12095982.v1
title: Supplementary Material for: Association between Vitamin D Level and Muscle Strength in Patients Undergoing Hemodialysis

description: <b><i>Introduction:</i></b> Identification of the risk factors and treatment of the decrease in muscle mass or strength are important to improve the prognosis of patients undergoing hemodialysis (HD). Previous studies have investigated the association between vitamin D level and muscle mass or strength in patients undergoing HD. However, there are conflicting results regarding this association. <b><i>Objective:</i></b> To evaluate the association between vitamin D level and muscle mass indices, strength, or physical performance in patients undergoing HD. <b><i>Methods:</i></b> This study was performed in a tertiary medical center. We included patients undergoing HD aged ≥20 years. A total of 84 patients were enrolled. The patients were divided into tertiles based on the 25-hydroxy (25-OH) vitamin D level as follows: lowest tertile (Lowest T, <i>n</i> = 28), middle tertile (Middle T, <i>n</i> = 28), and highest tertile (Highest T, <i>n</i> = 28). We evaluated the association between the tertiles and clinical outcomes including nutritional status, muscle mass, muscle function, handgrip strength (HGS), physical performance, and health-related quality of life (HRQoL) scales. <b><i>Results:</i></b> There were no significant differences in the muscle mass indices and nutritional markers according to tertiles of 25-OH vitamin D level. However, 25-OH vitamin D level as a continuous variable or the tertile of 25-OH vitamin D level as a categorical variable was positively associated with HGS. Logistic and linear regression analyses showed a consistent superiority of the Highest T in HGS compared with the Lowest or Middle T. Although the statistical significance was weak, the scores of various physical performance tests and the HRQoL scales were highest in the Highest T among the 3 tertiles. <b><i>Conclusion:</i></b> The present study demonstrated that serum vitamin D level is associated with HGS in patients undergoing HD regardless of muscle mass indices or nutritional status.
DOI: 10.6084/m9.figshare.12095967
title: supplementary material.docx

description: supplementary material
DOI: 10.6084/m9.figshare.12095967.v1
title: supplementary material.docx

description: supplementary material
DOI: 10.6073/pasta/e01c5678f825642da7d69260614bdcc2
title: Soil nutrient availability from the 2007 Anaktuvuk River, Alaska, USA fire scar during the 2016 growing season

description: This file contains plant-available nitrate (NO3), ammonium (NH4), and phosphate (PO4) in the upper 5-10 cm of organic matter from a burned and unburned site in the southern section of the 2007 Anaktuvuk River fire in northern Alaska. Soil nutrients were assessed using ion-exchange resin membranes incubated in the soil during the growing season of 2016.
DOI: 10.6084/m9.figshare.12095952
title: Supplementary table of the manuscript "A new species of the genus Hemiphyllodactylus Bleeker, 1860 (Reptilia: Squamata) from Hunan Province, China".

description: Table S1: Localities, voucher information, and Genbank accession numbers for specimens used in this study.Table S2: Uncorrected<i> p-</i>distance among the <i>Hemiphyllodactylus</i> species studied based on mitochondrial ND2 gene fragments.<br>