cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35078/hveeya/ne2s6g
title: Quebra Chifre D.jpg

description: :unav
DOI: 10.6084/m9.figshare.10086233
title: MOESM2 of Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues

description: Additional file 2. Supplementary Tables S1-S6.
DOI: 10.6084/m9.figshare.10086233.v1
title: MOESM2 of Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues

description: Additional file 2. Supplementary Tables S1-S6.
DOI: 10.6084/m9.figshare.10086140
title: CHD_Data_2019_PLOs1.xls

description: Dataset in microsoft excel format
DOI: 10.6084/m9.figshare.10086155
title: Endophytic fungal community structure in a hemiboreal forest

description: In this study we used high-throughput sequencing (HTS) to compare the diversity and community structure of fungi inhabiting leaves, branches and trunks of <i>Alnus incana</i> and <i>Corylus avellana</i> growing at three hemiboreal forest sites. Our analysis revealed that tree organ is the main determinant of the structure of fungal communities, while the effects of host species and locality remained secondary and negligible, respectively. The structure of fungal communities in trunks was the most distinct compared to that in leaves and branches. Foliar fungal communities were more similar within than between individual trees, implying that certain fungi may grow through parts of the tree crown. The weak effect of locality compared to host organs and species identity suggests that the variation in fungal community structure in the aboveground parts of trees depends mainly on deterministic factors rather than dispersal limitation.
DOI: 10.6084/m9.figshare.10086137
title: WGS of various HAP1 clones that have DNA repair deficiencies and/or were UV irradiated

description: Genetic variants (Strelka2 calls, excluding recurring variants) accumulated in HAP1 clones during 3 months in culture: two MSH2 k.o. clones; two MLH1 k.o. clones; one wild-type clone; one MLH1 k.o. UV-irradiated clone; one MSH2 k.o. UV-irradiated clone; one wild-type UV-irradiated clone, and one MUTYH k.o. UV-irradiated clone. Cells were exposed to UVC at 5 J/m2 three times, with an interval of 72h following each irradiation.
DOI: 10.6084/m9.figshare.10086065
title: DataProducts_LongTerm_Ions_Phobos

description: This dataset contains the long-term average ion environment at the orbit of Phobos observed by the MAVEN SEP, SWIA and STATIC instruments. This has been computed by Nenon et al [2019, submitted to JGR: Planets].<br>
DOI: 10.6084/m9.figshare.10086140.v1
title: CHD_Data_2019_PLOs1.xls

description: Dataset in microsoft excel format
DOI: 10.6084/m9.figshare.10084763
title: Ustekinumab treatment for moderate-to-severe plaque psoriasis: eight-year real-life experience

description: <b>Background</b>: Limited information is available from real-life studies evaluating the long-term efficacy and drug retention of ustekinumab. <b>Research design and methods</b>: Data from 378 patients with moderate-severe psoriasis were retrospectively analyzed. Over 8 years, disease severity and treatment response were evaluated using the PASI score. Predictors of PASI response were evaluated by logistic regression. Ustekinumab retention rate was calculated by the Kaplan–Meier method. <b>Results</b>: Over the 8 years, &gt;80% of patients achieved a PASI score of &lt;3 and PASI 75, 90 and 100 response was achieved in 76.2%, 61.9% and 57.1% of patients, respectively. Predictor variables for improved PASI response (after 2 years) were HLA-C*06-POS patients, female gender and BMI &lt;30 Kg/M<sup>2</sup>. The 2-year retention rate was 81% and 59% after 8 years with mean retention rate of 5.4 years. Improved retention rate was observed in patients positive for the HLA-C*06 allele (3.7 vs. 2.5 years, p = 0.005) and female gender (3.7 vs. 3.3 years, p = 0.06), with no significant difference observed in other patient groups. Ustekinumab was generally well tolerated without evidence of cumulative toxicity or organ toxicity. <b>Conclusion</b>: The long-term use of ustekinumab was observed to be effective and safe in patients with moderate-severe chronic psoriasis in a real world-setting.
DOI: 10.6084/m9.figshare.10086065.v1
title: DataProducts_LongTerm_Ions_Phobos

description: This dataset contains the long-term average ion environment at the orbit of Phobos observed by the MAVEN SEP, SWIA and STATIC instruments. This has been computed by Nenon et al [2019, submitted to JGR: Planets].<br>
DOI: 10.6084/m9.figshare.10084763.v1
title: Ustekinumab treatment for moderate-to-severe plaque psoriasis: eight-year real-life experience

description: <b>Background</b>: Limited information is available from real-life studies evaluating the long-term efficacy and drug retention of ustekinumab. <b>Research design and methods</b>: Data from 378 patients with moderate-severe psoriasis were retrospectively analyzed. Over 8 years, disease severity and treatment response were evaluated using the PASI score. Predictors of PASI response were evaluated by logistic regression. Ustekinumab retention rate was calculated by the Kaplan–Meier method. <b>Results</b>: Over the 8 years, &gt;80% of patients achieved a PASI score of &lt;3 and PASI 75, 90 and 100 response was achieved in 76.2%, 61.9% and 57.1% of patients, respectively. Predictor variables for improved PASI response (after 2 years) were HLA-C*06-POS patients, female gender and BMI &lt;30 Kg/M<sup>2</sup>. The 2-year retention rate was 81% and 59% after 8 years with mean retention rate of 5.4 years. Improved retention rate was observed in patients positive for the HLA-C*06 allele (3.7 vs. 2.5 years, p = 0.005) and female gender (3.7 vs. 3.3 years, p = 0.06), with no significant difference observed in other patient groups. Ustekinumab was generally well tolerated without evidence of cumulative toxicity or organ toxicity. <b>Conclusion</b>: The long-term use of ustekinumab was observed to be effective and safe in patients with moderate-severe chronic psoriasis in a real world-setting.
DOI: 10.6084/m9.figshare.10084745
title: Predictions - Domain-Peptide and Protein-Protein Interactions - HSM

description: Protein interaction predictions derived from hierarchical statistical mechanical modelling, a machine learning framework used to approximate biophysical models.<br><b>Data</b>Data are broken into two parts - protein level predictions (<i>hsm_p.predictions.csv</i>) and domain level predictions (<i>hsm_d.predictions.tar.gz</i>). Protein-protein predictions are triplets of two UniProt ids and the likelihood of binding. Domain-peptide interactions are chunked (arbitrarily) over JSON files. The JSON files are lists with each item containing the domain-peptide interactions of a single protein-protein interaction in the form:UID1,UID2 ,[[DTYPE, DUID1 , DSEQ , PSEQ, VAL ], ...] <br><br><b>Reference:</b>Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."<i> Nature Methods</i> (2020).
DOI: 10.6084/m9.figshare.10084736
title: SNP-eQTLs.zip

description: eQTLs in the MHC region.<br>“conditional 1” refers to eQTLs independent from the lead eQTL and “conditional 2” refers to eQTLs independent from the lead eQTL and the lead “conditional 1” eQTL<br>
DOI: 10.6084/m9.figshare.10084733
title: HLAtype_eQTLs.zip

description: Zipped file including HLA-type eQTLs.<br><br>“Conditional 0” refers to HLA-eQTLs conditional on the lead primary SNP eQTL, “Conditional 1” refers to HLA-eQTLs conditional on the lead primary and lead conditional 1 eQTLs and “Conditional 2” refers to HLA-eQTLs conditional on the lead primary, conditional 1 and conditional 2 eQTLs. <br>
DOI: 10.6084/m9.figshare.10084700
title: Life-cycle mediated effects of urbanization on parasite communities in the estuarine fish, Fundulus heteroclitus

description: Purpose : This document describes the file contents and variable coding for 6 csv files associated with PONE-D-19-21171.<br>File Name : biological.csvFile Description : This file contains parasite abundances, host information, and collection information.File Variables : site, season, length, weight, sex, swing, gyro, erga, argu, myzo, lasio, contra, glossoVariable description : site = location of fish collectionseason = the collection time of the fishlength = length (cm) of the fishweight = weight (g) of the fishsex = biological sex of the fishswing = raw abundance of Swingleus ancistrusgyro = raw abundance of Fundulotrema prolongiserga = raw abundance of Ergasilus funduliargu = raw abundance of Argulus fundulimyzo = raw abundance of Myzobdella lugubrislasio = raw abundance of Lasiotocus minutuscontra = raw abundance of Contracaecum sp.glosso = raw abundance of Glossocercus caribaensis<br>File Name : sediment_metals_ppm.csvFile description : This file contains ICP-MS concentration information (ppm) for metals in sediment.File variables : site, replicate, sediment....Variable decription:site = location of sediment collectionreplicate = replicate for ICP - MS readingsediment.... = sediment concentrations of metals (ppm). Metals are described by two-letter element symbols<br>File Name : water_metals_ppm.csvFile description : This file contains ICP-MS concentrations (ppm) for metals in estuarine water.File variables: site, season, replicate, .....site = location of water sample collectionseason = the collection time of water samplereplicate = replicate for ICP - MS reading.... = water concentrations of metals (ppm). Metals are described by two-letter element symbols.<br>File Name : nutrients.csvFile Description : This file contains ICP-MS concentrations (ppm) for nutrients in estuarine waterFIle variables: site, season, replicate, TN, TPVariable description:site = location of water sample collectionseason = the collection time of water samplereplicate = replicate for ICP - MS readingTN = total nitrogenTP = total phosphorus<br>File Name : chla.csvFile description : This file contains chla absorbance valuesFIle variables: site, season, replicate, chlasite = location of water sample collectionseason = collection time of water samplereplicate = replicate for fluorometry readingchla = chlorophyll a<br>File Name : YSI.csvFile description : This file contains average abiotic water measurementsFile variables : site, season, temperature, salinity, dissolved oxygenFile Description:site = location of sample collectionseason = collection time of sampletemperature = average temperature in celsiussalinity = salinity in pptdissolved oxygen = dissolved oxygen mg/L<br>
DOI: 10.6084/m9.figshare.10084736.v1
title: SNP-eQTLs.zip

description: eQTLs in the MHC region.<br>“conditional 1” refers to eQTLs independent from the lead eQTL and “conditional 2” refers to eQTLs independent from the lead eQTL and the lead “conditional 1” eQTL<br>
DOI: 10.6084/m9.figshare.10084700.v1
title: Life-cycle mediated effects of urbanization on parasite communities in the estuarine fish, Fundulus heteroclitus

description: Purpose : This document describes the file contents and variable coding for 6 csv files associated with PONE-D-19-21171.<br>File Name : biological.csvFile Description : This file contains parasite abundances, host information, and collection information.File Variables : site, season, length, weight, sex, swing, gyro, erga, argu, myzo, lasio, contra, glossoVariable description : site = location of fish collectionseason = the collection time of the fishlength = length (cm) of the fishweight = weight (g) of the fishsex = biological sex of the fishswing = raw abundance of Swingleus ancistrusgyro = raw abundance of Fundulotrema prolongiserga = raw abundance of Ergasilus funduliargu = raw abundance of Argulus fundulimyzo = raw abundance of Myzobdella lugubrislasio = raw abundance of Lasiotocus minutuscontra = raw abundance of Contracaecum sp.glosso = raw abundance of Glossocercus caribaensis<br>File Name : sediment_metals_ppm.csvFile description : This file contains ICP-MS concentration information (ppm) for metals in sediment.File variables : site, replicate, sediment....Variable decription:site = location of sediment collectionreplicate = replicate for ICP - MS readingsediment.... = sediment concentrations of metals (ppm). Metals are described by two-letter element symbols<br>File Name : water_metals_ppm.csvFile description : This file contains ICP-MS concentrations (ppm) for metals in estuarine water.File variables: site, season, replicate, .....site = location of water sample collectionseason = the collection time of water samplereplicate = replicate for ICP - MS reading.... = water concentrations of metals (ppm). Metals are described by two-letter element symbols.<br>File Name : nutrients.csvFile Description : This file contains ICP-MS concentrations (ppm) for nutrients in estuarine waterFIle variables: site, season, replicate, TN, TPVariable description:site = location of water sample collectionseason = the collection time of water samplereplicate = replicate for ICP - MS readingTN = total nitrogenTP = total phosphorus<br>File Name : chla.csvFile description : This file contains chla absorbance valuesFIle variables: site, season, replicate, chlasite = location of water sample collectionseason = collection time of water samplereplicate = replicate for fluorometry readingchla = chlorophyll a<br>File Name : YSI.csvFile description : This file contains average abiotic water measurementsFile variables : site, season, temperature, salinity, dissolved oxygenFile Description:site = location of sample collectionseason = collection time of sampletemperature = average temperature in celsiussalinity = salinity in pptdissolved oxygen = dissolved oxygen mg/L<br>
DOI: 10.6084/m9.figshare.10084745.v1
title: Predictions - Domain-Peptide and Protein-Protein Interactions - HSM

description: Protein interaction predictions derived from hierarchical statistical mechanical modelling, a machine learning framework used to approximate biophysical models.<br><b>Data</b>Data are broken into two parts - protein level predictions (<i>hsm_p.predictions.csv</i>) and domain level predictions (<i>hsm_d.predictions.tar.gz</i>). Protein-protein predictions are triplets of two UniProt ids and the likelihood of binding. Domain-peptide interactions are chunked (arbitrarily) over JSON files. The JSON files are lists with each item containing the domain-peptide interactions of a single protein-protein interaction in the form:UID1,UID2 ,[[DTYPE, DUID1 , DSEQ , PSEQ, VAL ], ...] <br><br><b>Reference:</b>Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."<i> Nature Methods</i> (2020).
DOI: 10.6084/m9.figshare.10084607
title: SynD - NILMTK Version

description: SynD as HDF5 in the NILMTK data format
DOI: 10.6084/m9.figshare.10084610
title: hgcA-HMM-profile

description: hgcA HMM profile for searching for putative hgcA hits in genomes
DOI: 10.6084/m9.figshare.10084619
title: PLAID 2018

description: The 2019 version of Plug-Load Appliance Identification Dataset (PLAID), containing voltage and current measurements from different electrical household appliances sampled at 30 kHz, collected at 65 different locations in Pittsburgh, Pennsylvania (US).
DOI: 10.6084/m9.figshare.10084604
title: reference-hgcA-alignment

description: Trimmed and filtered alignment of select hgcA reference proteins for use in phylogeny
DOI: 10.6084/m9.figshare.10084625.v1
title: Untitled Root endophytic fungal ‘fingerprinting’ reflects plant spatial co-occurrence patterns in a subtropical forest Item

description: OTU tables and representative OTUs that were used to explore the host-dependent differentiation of the endophytic communities for 39 plant species in a subtropical forest.
DOI: 10.6084/m9.figshare.10084607.v1
title: SynD - NILMTK Version

description: SynD as HDF5 in the NILMTK data format
DOI: 10.6084/m9.figshare.10084601
title: hgcA-proteins

description: FASTA-formatted file of all identified hgcA proteins
DOI: 10.6084/m9.figshare.10084604.v1
title: reference-hgcA-alignment

description: Trimmed and filtered alignment of select hgcA reference proteins for use in phylogeny
DOI: 10.6084/m9.figshare.10084625.v2
title: Root endophytic fungal ‘fingerprinting’ reflects plant spatial co-occurrence patterns in a subtropical forest Item

description: OTU tables and representative OTUs that were used to explore the host-dependent differentiation of the endophytic communities for 39 plant species in a subtropical forest.
DOI: 10.6084/m9.figshare.10084625.v3
title: Root-associated fungal community as a host-dependent feature reflects plant spatial co-occurrence patterns in a subtropical forest

description: OTU tables and representative OTUs that were used to explore the host-dependent differentiation of the endophytic communities for 39 plant species in a subtropical forest.
DOI: 10.6084/m9.figshare.10081463
title: Representative OTUs of bulk soil samples

description: Representative OTUs of bulk soil samples
DOI: 10.6084/m9.figshare.10082012
title: Data for "Carrion crows (Corvus corone) fail the mirror mark test yet again"

description: Raw data for the mirror mark test (data_mmt_raw.csv)Raw data from the familiarisation period (data_familiarisation_raw.csv)<br>Code for different behaviours can be found in the codebook. Help on how to read the data files can be found in txt files. <br>Specifically, in the file data_mmt_raw.csv the second column gives details of the trial, including the day (D1 to D8), the aviary number of the bird (V1 to V4) and the condition number (C1 to C4).
DOI: 10.6084/m9.figshare.10081238
title: Representative OTUs for root tip samples

description: Representative OTUs for root tip samples
DOI: 10.6084/m9.figshare.10081079
title: OTU table of bulk soil samples

description: OTU table of bulk soil samples
DOI: 10.6084/m9.figshare.10081238.v1
title: Representative OTUs for root tip samples

description: Representative OTUs for root tip samples
DOI: 10.6084/m9.figshare.10082012.v2
title: Data for "Carrion crows (Corvus corone) fail the mirror mark test yet again"

description: Raw data for the mirror mark test (data_mmt_raw.csv)Raw data from the familiarisation period (data_familiarisation_raw.csv)<br>Code for different behaviours can be found in the codebook. Help on how to read the data files can be found in txt files. <br>Specifically, in the file data_mmt_raw.csv the second column gives details of the trial, including the day (D1 to D8), the aviary number of the bird (V1 to V4) and the condition number (C1 to C4).
DOI: 10.6084/m9.figshare.10082012.v1
title: Data for "Carrion crows (Corvus corone) fail the mirror mark test yet again"

description: Raw data for the mirror mark test.Legend can be found in word-doc CroBehC.docx
DOI: 10.6084/m9.figshare.10080635
title: Data and code.zip

description: Datasets and microcontroller codes accompanying the article "On the mechanism of automated fizzy extraction"
DOI: 10.6084/m9.figshare.10080824
title: OTU table of root tip samples

description: OTU table of root tip samples
DOI: 10.6084/m9.figshare.10081079.v2
title: OTU table of bulk soil samples

description: OTU table of bulk soil samples
DOI: 10.6084/m9.figshare.10080824.v2
title: OTU table of root tip samples

description: OTU table of root tip samples
DOI: 10.6084/m9.figshare.10079753
title: gammaBOriS validation dataset

description: Positive and negative dataset created for validation of machine learning models to classify/identify gammaproteobacterial oriC sequences.
DOI: 10.6084/m9.figshare.10080824.v1
title: OTU table of root tip samplesRoot endophytic fungal ‘fingerprinting’ reflects plant spatial co-occurrence patterns in a subtropical forest

description: OTU table of root tip samples
DOI: 10.6084/m9.figshare.10079753.v1
title: gammaBOriS validation dataset

description: Positive and negative dataset created for validation of machine learning models to classify/identify gammaproteobacterial oriC sequences.
DOI: 10.6084/m9.figshare.10079087
title: lyrical_preferences_moral_foundations.sav

description: This dataset was used for a paper on the relationship between moral foundations and lyrical preferences. It features the Moral Foundations Scale (five factors) and a Lyrical Preferences scale that has been divided into five factors.
DOI: 10.6084/m9.figshare.10079087.v1
title: lyrical_preferences_moral_foundations.sav

description: This dataset was used for a paper on the relationship between moral foundations and lyrical preferences. It features the Moral Foundations Scale (five factors) and a Lyrical Preferences scale that has been divided into five factors.
DOI: 10.6084/m9.figshare.10079069
title: Supplementary Material for: Tofacitinib in Pediatric Psoriasis: An Open-Label Trial to Study Its Safety and Efficacy in Children

description: <b><i>Introduction:</i></b> Psoriasis is a chronic, multifactorial, inflammatory disorder, with an estimated prevalence of 0.71% in children. The commonly used therapeutic agents target the underlying inflammation. Tofacitinib has demonstrated efficacy in adult psoriasis. <b><i>Aim:</i></b> To study the efficacy, safety, and tolerability of tofacitinib in pediatric patients with moderate to severe chronic plaque psoriasis. <b><i>Methods:</i></b> The study included children aged between 8 and 17 years, with moderate to severe psoriasis, given tofacitinib 5 mg orally twice daily for at least 36 weeks. The clinical response was estimated using the Psoriasis Area and Severity Index (PASI) score, Physician’s Global Assessment (PGA), and the Children’s Dermatology Life Quality Index (CDLQI). The incidence and severity of adverse events (AEs) were meticulously recorded in each case. <b><i>Results:</i></b> A total of 47 patients, with a median age of 12.3 years, completed the study. At week 12, 55.32% achieved PASI 75, and 70.21% at week 36. PGA of clear or almost clear responses at week 12 were 59.57 and 65.96%, ­respectfully, at week 36. Relatively few and mostly minor ­adverse effects were noted. No severe AEs were reported. ­<b><i>Conclusion:</i></b> The treatment with tofacitinib was safe and well tolerated, and led to significant improvement of their disease and quality of life as reflected in CDLQI scores. However, the results need to be validated in larger multicenter trials.
DOI: 10.6084/m9.figshare.10079039
title: Source data for fig2&fig3.xlsx

description: source data for Fig2 and Fig3
DOI: 10.6084/m9.figshare.10078955
title: Tables S4-S6 of the paper: "Ancient tropical extinctions at high latitudes contributed to the latitudinal diversity gradient"

description: <b>Table S4-S6. Complete fossil dataset for the turtles, crocodiles and lepidosaurs analysed in this study</b>
DOI: 10.6084/m9.figshare.10078955.v1
title: Tables S4-S6 of the paper: "Ancient tropical extinctions at high latitudes contributed to the latitudinal diversity gradient"

description: <b>Table S4-S6. Complete fossil dataset for the turtles, crocodiles and lepidosaurs analysed in this study</b>