cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/24dzpdwb6h
title: Revealing the genesis of NO3-N pollution gradient in shallow groundwater of an intensely anthropogenic-impacted Basin by explainable machine learning

description: This database includes two machine learning code files and one dataset file. The machine learning code files provide four different models: multiple linear regression, Bayesian ridge regression, random forest, and gradient boosting regression tree (‘Four machine learning models .ipynb’), as well as a feature importance evaluation based on the random forest model (‘Feature importance .ipynb’). The dataset in .csv format comprises 599 sampling points' data from the Shaying River Basin, covering groundwater quality, soil, meteorological, hydrogeological vulnerability, and land use data, with a size of 599*16.
DOI: 10.6084/m9.figshare.25036760.v3
title: MethylationEPIC_v-1-0_B4.csv

description: Whole genome methylation sequencing results of COPD patients.Genome-wide DNA methylation was performed at over 485,000 CpG sites blood isolated from individuals with and without COPD (non-COPD n =8, COPD n = 8).
DOI: 10.6084/m9.figshare.13143455.v1
title: VAMB Benchmark Results

description: Output of VAMB on the benchmark datasets: CAMI2: Airways, GI, Oral, Skin, Urog and the MetaHIT dataset. Each folder contains:<br>- clusters.tsv: Clustername and contigname- tnf.npz: Tetranucleotide Frequency information for each contig in Numpy npz format- latent.npz: Latent representation of each contig in Numpy npz format- mask.npz: Contig mask, ie. if contigs should not be used in encoding in Numpy npz format- model.pt: Final VAE model in PyTorch- log.txt: Logfile of the run containing information on settings, loss and clustering- lengths.npz: Length of each contig in Numpy npz format<br>
DOI: 10.6084/m9.figshare.20004335.v4
title: Water availability creates global thresholds in multidimensional soil biodiversity and functions

description: Global field survey to investigate the environmental thresholds of soil biodiversity (bacteria, fungi, protists and invertebrates) and functions (water regulation, plant productivity, nutrient cycling, organic matter decomposition, and plant-microbe interactions).
DOI: 10.25378/janelia.12108954.v2
title: Raw calcium imaging data (2-1) for Generation of stable heading representations in diverse visual scenes

description: Two-photon imaging data for the following paper.<br><br>Generation of stable heading representations in diverse visual scenes<br>Sung Soo Kim+, Ann M. Hermundstad, Sandro Romani, L. F. Abbott, Vivek Jayaraman+<br>Nature (2019) 576:126-131<br>Many animals rely on an internal heading representation when navigating in varied environments. How this representation is linked to the sensory cues that define different surroundings is unclear. In the fly brain, heading is represented by 'compass' neurons that innervate a ring-shaped structure known as the ellipsoid body. Each compass neuron receives inputs from 'ring' neurons that are selective for particular visual features; this combination provides an ideal substrate for the extraction of directional information from a visual scene. Here we combine two-photon calcium imaging and optogenetics in tethered flying flies with circuit modelling, and show how the correlated activity of compass and visual neurons drives plasticity, which flexibly transforms two-dimensional visual cues into a stable heading representation. We also describe how this plasticity enables the fly to convert a partial heading representation, established from orienting within part of a novel setting, into a complete heading representation. Our results provide mechanistic insight into the memory-related computations that are essential for flexible navigation in varied surroundings.<br><br>Additional materials found in this Collection: https://doi.org/10.25378/janelia.c.4932540<br><br>
DOI: 10.6084/m9.figshare.16778962.v1
title: ecg-polar-h10-set4

description: Single-lead ECG tracings along with heart rate and 3-axis chest actigraphy using a Polar H10 sensor worn with on a Polar Pro chest strap, with data transferred via bluetooth to an Android smartphone (Realme 6i) that serves as a bluetooth receptor unit and data recorder via the Polar Sensor Logger app on Android by Jukka Happonen (Polar developer, this app is unofficial): https://play.google.com/store/apps/details?id=com.j_ware.polarsensorlogger<br>Data was compressed with 7-zip using LZMA2 in Normal compression setting and split into 5GB parts to respect the file size limit of figshare. Total is 11.4 GB compressed, 66 GB uncompressed.<br>This dataset covers the period from 2021-07-12 to 2021-10-08, with a gap between 2021-08-21 to 2021-09-13 during which no data was acquired due to travelling. There is no overlap with previous sets, this is the continuation. See other sets for further data.<br>This wearable was only worn when at home.<br>Each file represents one acquisition session, of variable time up to 140h in one session. The acquisition software also split files when the device is temporarily out of reach, so there several files with very few entries, which means the device was barely reachable or went in and out of bluetooth range. These files can be concatenated to study a longer time period. There are 4 types of files: ECG for the raw ECG at 133Hz sampling rate, HR for the heart-rate computed by the proprietary Polar embedded software in the H10 sensor and also the IBI (inter-beats intervals) to ease calculation of HRV (heart rate variability), ACC for the 3-axis (accelerometer = translation axes) chest actigraphy set at 100Hz sampling rate and 4g sampling resolution, and Marker which are manual markers by the operator to mark special temporal events but they were not used for this study so they are either deleted or empty. For the full technical specification of the Polar H10 device, see: https://github.com/polarofficial/polar-ble-sdk/tree/master/technical_documentation
DOI: 10.6084/m9.figshare.24983172.v1
title: data.xlsx from Climate change is associated with asynchrony in arrival between two sympatric cuckoos and both host arrival and prey emergence

description: Matching the timing of spring arrival to the breeding grounds with hosts and prey is crucial for migratory brood parasites such as cuckoos. Previous studies have focused mostly on phenological mismatch between a single cuckoo species and its hosts but information regarding climate-driven mismatch between multiple sympatric cuckoo species and their hosts and invertebrate prey is still lacking. Here, we analysed long-term data (1988–2023) on the first arrival date of two declining migratory cuckoo species and their 14 migratory host species breeding in sympatry and prey emergence date in Tatarstan (southeast Russia). We found that the common cuckoo (<i>Cuculus canorus</i>; wintering in Africa) generally arrived on breeding grounds earlier than the oriental cuckoo (<i>Cuculus optatus</i>; wintering in southeast Asia and Australia). Both cuckoos have advanced their arrival dates over 36 years but less than their hosts, potentially resulting in an increasing arrival mismatch between cuckoos and their hosts. Moreover, cuckoo arrival advanced less than the emergence date of their prey over time. These observations indicate that climate change may disrupt co-fluctuation in the phenology of important life stages between multiple sympatric brood parasites, their hosts and prey with potential cascading consequences for population dynamics of involved species.
DOI: 10.6084/m9.figshare.8031392.v1
title: Influence of muscle source on proximate composition, texture profile and protein oxidation of beef from grain-finished Bos indicus cattle

description: ABSTRACT: The aim of this research was to investigate the influence of muscle type on protein oxidation, texture profile (hardness, springiness, cohesiveness and chewiness) and proximate composition of beef from grain-finished Bos indicus (Nellore) cattle in Brazil. The muscles longissimus lumborum (LL) and psoas major (PM) were collected 24 h post mortem from eight (n=8) Nellore bull carcasses, fabricated into five steaks (1.5-cm) and displayed under aerobic conditions for nine days at 4 °C. Proximate composition and texture profile were analyzed on day 0, whereas protein oxidation was analyzed during 9 days of storage. LL exhibited greater (P&lt;0.05) protein concentration than PM steaks, whereas PM demonstrated greater (P&lt;0.05) lipid and ash content than their correlative LL. In addition, LL steaks exhibited greater (P&lt;0.05) hardness, springiness, cohesiveness and chewiness than PM steaks. In contrast, protein oxidation was greater (P&lt;0.05) in PM than in LL steaks throughout the storage. The results suggest that the differences of muscle metabolism and composition contributed to the variation on biochemical attributes and texture profile of LL and PM steaks. Muscle-specific strategies are indicated to improve the color stability of PM steaks from grain-finished Bos indicus cattle.
DOI: 10.6084/m9.figshare.8040407.v1
title: FTIR sprectra

description: spectra data during the haze particle collection campaign
DOI: 10.6084/m9.figshare.19526206.v2
title: Metagenomic Contigs - Combined Prokka, HTSeq, and KEGG gene and pathway information for metabolisms of interest

description: Combined Prokka and HTSeq output (Lindsay2.contigs_prokka.ct.df.csv) with KEGG ortholog gene IDs for metabolic pathways and KEGG metabolic Modules of interest for the degradation of plastics. Locus tag IDs annotated to each KEGG ID were pulled and combined with information from KEGG, Prokka, and HTSeq output.
DOI: 10.6084/m9.figshare.20099621.v3
title: Gibbon_Gut_Virome_Dataset

description: This dataset include in-house R scripts and relevant data used to generate figures regarding the gut phageome eco-evolutionary dynamics in feces of six skywalker hoolock gibbons with seasonal diet variations.
DOI: 10.6084/m9.figshare.23528232.v3
title: <strong>Gridded livestock density database and spatial trends for Kazakhstan</strong>

description: We developed gridded livestock (horses and small ruminants, i.e., sheep & goats) density maps at high-resolution (1 km) for Kazakhstan during 2000-2019 using vegetation proxies, climatic, socioeconomic, topographic, and proximity forcing variables. The developed livestock maps can be used in spatially explicit research, such as quantifying grass-livestock balance, water consumption by animal husbandry, methane emissions, risk of zoonotic diseases, and other environmental impact assessments. The repository has three folders with small ruminants, horses, and sample code and data in separate folders. Each file is saved in GeoTiff format with 1-km spatial resolution and an Albers equal-area conic projection. Each file is saved with an acronym of ‘sr’ for small ruminants (Sheep & goat) and ‘hr’ for horses, followed by an underscore and a year. Missing data are represented by “No data.”
DOI: 10.6084/m9.figshare.28462787.v1
title: Mexico's High Resolution Climate Database (MexHiResClim): monthly accumulated precipitation data for Mexico

description: Monthly accumulated precipitation for Mexico at a resolution of 20 arc-seconds for the 1951-2020 period. The data are distributed as GeoTiffs in geographical coordinates at a 20 arcsec resolution, with each file containing the twelve months of each year. These data were computed from the gridded daily precipitation values of the MexHiResClimDB.
DOI: 10.6084/m9.figshare.25470013.v1
title: Supplementary material for Chapter 3

description: This dataset contains the appendix tables for the third chapter of my thesis. This includes the accessions metadata, quality control information, post-filtering summary statistics of BUSCO alignments and BUSCO IDs of the extracted sets of sect. Adnataria and Exsertaria.
DOI: 10.17632/xvp7v9rt6k
title: SAWFutureProjections

description: This archive contains daily Santa Ana Wind Regional Index derived from the dynamically-trained statistical downscaling of winds from the NCEP/NCAR Reanalysis 1 (SAWRI.R1D.rdat) as well as from eight Global Climate Models (SAWRI.gcmname.rdat). SAWRI.R1D spams from 1948 to 2012 and SAWRI.gcmname run from 1950 to 2100. The projection period (2006-2100) was forced under a RCP8.5 in all GCMs.
DOI: 10.6084/m9.figshare.11949048.v1
title: Gene-RD-provenance_CTL_linkset

description: In this dataset provides a CyTargetlinker (a Cytoscape app) compatible linkset to link monogenic, rare diseases (OMIM identifier) with a known genetic cause (HGNC, Ensembl) supplemented with manually extracted provenance of both the disease and the discovery of the underlying genetic cause of the disease (PMID).
DOI: 10.6084/m9.figshare.5122750.v1
title: Supplementary Material for: Sensitivity and Specificity of Urinary Neutrophil Gelatinase-Associated Lipocalin and Kidney Injury Molecule-1 for the Diagnosis of Renal Cell Carcinoma

description: <i>Background/Aims:</i> Neutrophil gelatinase-associated lipocalin (NGAL) and kidney injury molecule-1 (KIM-1) are urinary biomarkers of diagnostic relevance in a wide variety of acute and chronic kidney diseases. Their diagnostic sensitivity and specificity for kidney cancer are largely unknown and therefore the subject of this investigation. <i>Methods:</i> A prospective cohort study was performed to evaluate urine biomarkers for clear-cell and papillary subtypes of renal cancer (67 patients undergoing nephrectomy) and 55 control patients undergoing non-kidney surgery. Urinary KIM-1 and NGAL concentrations were determined by sensitive and specific ELISAs. <i>Results:</i> In renal cancer patients, median NGAL excretion was 0.52 (1st to 3rd quartiles: 0.28–0.82) ng/mg urinary creatinine (U<sub>Cr</sub>) before nephrectomy compared to 0.15 (0.04–0.31) ng/mg U<sub>Cr</sub> in controls (p &lt; 0.001), and there was a modest decrease of 30% after nephrectomy (p &lt; 0.008). NGAL was not correlated to tumor size (r = 0.19, p = 0.27) or stage. Before nephrectomy, KIM-1 excretion was 0.68 (0.40–1.12) ng/mg U<sub>Cr</sub> compared to 0.03 (0.01–0.06) in controls (p &lt; 0.001). There was a linear correlation between KIM-1 excretion before nephrectomy and tumor size (Spearman’s r = 0.66, p &lt; 0.001), tumor stage, and a 50% decrease in median KIM-1 concentration 1 month following tumor excision (p &lt; 0.01). Biomarker concentration ranges for renal cancer patients and controls overlapped substantially for NGAL but not KIM-1. <i>Conclusion:</i> NGAL is not a sensitive or specific urinary biomarker of kidney cancer. Although KIM-1 had diagnostic sensitivity for kidney cancer, it is well known to reflect many types of kidney injuries, thus limiting its specificity as a diagnostic biomarker for renal cancer.
DOI: 10.17632/8nh8t63ygm
title: Tinder Experiment Do you like me

description: This repository contains an R script (`Regression_Repo.R`) that performs a detailed logistic regression analysis on user preferences in Tinder profiles, based on survey data.
DOI: 10.6084/m9.figshare.24635889.v1
title: Genome Annotation

description: Genome Annotation (repeats, ncRNAs, and protein-coding genes) for a stag beetle species, <i>Prosopocoilus inquinatus</i>
DOI: 10.6084/m9.figshare.27926505.v2
title: <b>Late </b><b>Paleozoic diachronous</b><b> </b><b>subduction initiation</b><b> of the SE Paleo-Asian Ocean: Implications for tectonic transition from passive to active continental margin along northern North China</b>

description: The dataset includes major and trace elements data, ziron U-Pb isotopic and whole rock Sr-Nd isotopic data. These data are used in the article "Late Paleozoic diachronous subduction initiation of the SE Paleo-Asian Ocean: Implications for tectonic transition from passive to active continental margin along northern North China".
DOI: 10.6084/m9.figshare.3519068.v1
title: Appendix A. Data availability, including a full list of species scientific names, taxa, and the number of data for each parameter and database, and a short list of the number of records for each of the parameters and database.

description: Data availability, including a full list of species scientific names, taxa, and the number of data for each parameter and database, and a short list of the number of records for each of the parameters and database.
DOI: 10.6084/m9.figshare.11815533.v1
title: Quality assessment for VGI linear features.rar

description: The data and codes that support the findings of the manuscript entitled "A comprehensive quality assessment framework for linear features from Volunteered Geographic Information".
DOI: 10.6084/m9.figshare.14546247.v1
title: cryptocurrencies 2017_2019.xlsx

description: For each cryptocurrency in the sample the data for prices, volumes and market capitalization is retrieved from https://coinmarketcap.com/, as well as from https://bitinfocharts.com/comparison/tweets-btc-eth-ltc-xrp.html for the number of tweets for each cryptocurrency in the period from 2017-2019.
DOI: 10.6084/m9.figshare.24881694.v2
title: EEG datasets of a male dyad acquired with wet EEG caps during a table tennis sessions.

description: Each dataset contains raw (unprocessed) EEG signals synchronously acquired with ECG and respiration signals of two male volunteers involved in a table tennis paradigm. In each dataset there are sessions of cooperative, competitive and individual playing.
DOI: 10.6084/m9.figshare.13035068.v1
title: Data from: Mitochondrial DNA Sequence Diversity in Mammals: a correlation between the effective and census population sizes

description: All alignment files and datasets used in the manuscript.
DOI: 10.6084/m9.figshare.22691296.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.27606450.v1
title: Bridging the Gap in Text-Based Emotion Detection - SemEval 2025 Task 11

description: <b>Dataset for the Shared Task: Bridging the Gap in Text-Based Emotion Detection – SemEval 2025, Task 11</b><br>
DOI: 10.6084/m9.figshare.3582078.v2
title: 12C graphene, 90 kV

description: STEM micrographs of 99% <sup>12</sup>C graphene imaged with electrons accelerated by a voltage of 90 kV. Each item in the fileset is a ZIP archive containing a single time series of consecutive frames recorded with a medium angle annular dark field detector until an ejection was observed.<br>
DOI: 10.17632/4zswfxtbvh
title: “生育登记取消婚姻限制”政策会影响公众的婚育观念吗？一项来自中国的在线调查

description: 本研究参考Salomon等人的一项多中心研究，结合研究目的和中国国情，自行设计《非婚生育政策调查问卷》，了解社会大众对生育登记取消结婚限制及单身女性未婚生育的认知与态度。问卷内容包括三个部分：（1）社会人口学特征：包括受访者性别、年龄、学历、出生地等20个条目。（2）对婚育的认知与看法：包括对婚姻的看法、最佳生育年龄、理想孩子数量、婚姻与生育的关系等9项条目；（3）对非婚生育的认知与看法：包括对非婚生育的了解程度（3项条目）、对非婚生育政策的态度（5项条目）、对非婚生育影响的态度（5项条目）、对单身女性选择非婚生育的态度（4项条目）。本次调查共发放1091份问卷，其86份因回答时间过短（&lt;3min）、未回答所有问题、在指令性问题中未选择正确选项等而被视为无效问卷，共收集有效问卷1005份，有效应答率为92.12%。
DOI: 10.6084/m9.figshare.28417184.v1
title: Data Blanco et al. 2025

description: Data used for the analysis in Blanco et al. 2025
DOI: 10.6084/m9.figshare.11453127.v1
title: CONTENT VALIDITY, RELIABILITY AND CONSTRUCT VALIDITY OF A CHECKLIST FOR DIVE ROLL EVALUATION

description: ABSTRACT The objective of this study was to verify the content validity, reliability and construct validity of a checklist for dive roll evaluation. As for content validity, 4 experts in the Artistic Gymnastics field evaluated the checklist using the Delphi technique. Results showed good content validity indexes for the evaluation questions (CVI&gt;0.80). About reliability, 6 raters analyzed 20 dive roll videos of 10 children, using the checklist. Results showed intra-rater ((ICC&gt;0.80) and inter-rater agreement (ICC&gt;0.90). Finally, concerning construct validity, 156 skill videos were analyzed using the checklist. Cronbach’s alpha and Exploratory Factor Analysis with Varimax rotation were applied, with the latter indicating good internal consistency (α=0.76) and the existence of three factors that explain the checklist. Thus, it is concluded that the checklist is valid and reliable to evaluate the proposed motor skill.
DOI: 10.6084/m9.figshare.25309096.v1
title: Scoping Review - Full text data extraction table

description: A scoping review to explore what interventions, if any, have been employed to foster speaking-up behaviours of RNs working in the care of older people.
DOI: 10.17632/v6ztf9tz9f
title: A Comprehensive Dataset of the Family Business Groups Firms

description: This data is related to the Family business groups of Pakistan
DOI: 10.6084/m9.figshare.28905128.v1
title: pdxe_mouse_and_human_isoform_Effective_Length.txt.gz

description: Updated annotations and expression count matrices for the 2015 Novartis PDXE manuscript. Expression counts are calculated using PISCES (which in turn uses Salmon), against the Ensembl reference transcriptome.PDXE manuscript: Gao, H., Korn, J., Ferretti, S. et al. High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response. Nat Med 21, 1318–1325 (2015). https://doi.org/10.1038/nm.3954PISCES manuscript: https://www.biorxiv.org/content/10.1101/2020.12.01.390575v1Salmon: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5600148/
DOI: 10.6084/m9.figshare.29105435.v1
title: Annual dry season crop yield of paddy in Indonesia from 2001 – 2021 with 1-km spatial resolution

description: This dataset contains the annual dry cropping season yield of paddy in Indonesia from 2001 - 2021 with 1-km spatial resolution. Developed using a hybrid approach, integrating census-based data from government agricultural observations with model-based data from remote sensing products. This dataset includes the information about the crop yield data of the second (February - May) and third cropping (June - October) season in Indonesia from 2001 - 2021. This dataset offers information at a finer spatiotemporal resolution to enable studies on agricultural fields under climate change.
DOI: 10.17632/8hpz3x3d6n
title: Data for: Unraveling the efficient use of waste lignin as a bitumen modifier for sustainable roads.
DOI: 10.6084/m9.figshare.28210793.v1
title: data<b>Exploring the </b><b>a</b><b>ssociation between </b><b>dietary indices</b><b> </b><b>and</b><b> metabolic dysfunction-associated steatotic liver disease: mediation analysis and evidence from NHANES</b>

description: <b>Exploring the </b><b>a</b><b>ssociation between </b><b>dietary indices</b><b> </b><b>and</b><b> metabolic dysfunction-associated steatotic liver disease: mediation analysis and evidence from NHANES</b>
DOI: 10.17632/rxsgcnx547
title: The ecological niche and conservation value of Central European grassland orthopterans: A quantitative approach

description: Raw data used for MaxEnt models computation (S1) and results of these models (S2).
DOI: 10.17632/xxyzhpnc5w
title: Use of the Connor-Davidson Resilience Scale in a Complex Medical Dermatology Clinic: Cross-sectional study evaluating associations between resilience, Health-related Quality of Life and Mental Health

description: Supplemental material for article "Use of the Connor-Davidson Resilience Scale in a Complex Medical Dermatology Clinic: Cross-sectional study evaluating associations between resilience, Health-related Quality of Life and Mental Health" 

Contents: 
-Additional methods 
-Supplementary Table 1, description of patient characteristics in the cohort 
-Supplementary Table 2, description of CD-Risc 25 items