cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1162676.v1
title: Gaussian Job Archive for C8H12F3NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1162516
title: Justice_data

description: This dataset contains the data about the decisions of 9 judge of the US court on 26 different constitutional issues.
DOI: 10.6084/m9.figshare.1162518
title: Trade_data

description: This file contains a dataset extracted from BACI-COMTRADE regarding the export values of 12 countries over 97 HS2 product categories.
DOI: 10.6084/m9.figshare.1162516.v1
title: Justice_data

description: This dataset contains the data about the decisions of 9 judge of the US court on 26 different constitutional issues.
DOI: 10.6084/m9.figshare.1162499
title: Loss of MMP-8 affects MMTV-PyMT neutrophil, but not macrophage, infiltration and expression of pro-inflammatory mediators.

description: A) Number of macrophages/mm2 and neutrophils/mm2 in early and late stage tumors as determined by staining for F4/80 and Ly6B.2, respectively. The number of mice used for analyses of macrophage and neutrophil infiltration respectively were at 6 weeks: Mmp8 wild-type (WT, n = 5, 5), heterozygote (HET, n = 4,3) and null (KO, n = 2,3); 8 weeks: Mmp8 wild-type (WT, n = 4,5), heterozygote (HET, n = 6,5), null (KO, n = 4,5) and at 10 weeks: Mmp8 wild-type (WT, n = 5,5), heterozygote (HET, n = 5,5) and null (KO, n = 4,4).* p &lt; 0.05, ** p &lt; 0.01. One representative image of macrophage and neutrophil staining is shown for each genotype at 10 weeks of age. B) Relative RNA expression of macrophage marker CD68, IL-6 and CXCL5/LIX, normalized to 18S rRNA, throughout disease progression (6–14 weeks of age).
DOI: 10.6084/m9.figshare.1162505
title: Loss of MMP-8 accelerates tumor onset; promotes progression, tumor size and lung macrometastases in the MMTV-PyMT model.

description: A) Detection of first palpable tumors of MMTV-PyMT; Mmp8 wild-type (WT, n = 17), MMTV-PyMT; Mmp8 heterozygote (HET, n = 30) and MMTV-PyMT; Mmp8 null (KO, n = 10) mice. Mean ± sem, 2-tailed unpaired t-test; * p &lt; 0.05; ** p &lt; 0.01. B) Tumor progression determined by palpation of all 10 mammary glands from day 21 to day 98 for MMTV-PyMT; Mmp8 wild-type (WT, n = 26), heterozygote (HET, n = 34) and null (KO, n = 21) mice. C) Tumor size distribution (0, &lt; 0.5, 0.5-1, &gt;1 cm) at 10 weeks of age for MMTV-PyMT; Mmp8 wild-type (WT, n = 26), MMTV-PyMT; Mmp8 heterozygote (HET, n = 34) and MMTV-PyMT; Mmp8 null (KO, n = 21) mice; and at 14 weeks of age for MMTV-PyMT; Mmp8 wild-type (WT, n = 22), MMTV-PyMT; Mmp8 heterozygote (HET, n = 30) and MMTV-PyMT; Mmp8 null (KO, n = 16) mice. Chi-square test, * p &lt; 0.01. D) Number of lung macrometastases assessed at 14 weeks of age for MMTVPyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 4) and MMTV-PyMT; Mmp8 null (KO, n = 2) mice. Left panel of representative pictures depicts the top and bottom of all lung lobes (1 lobe of the left lung, 4 lobes of the right lung). Black solid arrows = smaller macrometastases, white solid arrows = larger macrometastases. Mean ± sem, 2-tailed unpaired t-test; ** p &lt; 0.01.
DOI: 10.6084/m9.figshare.1162507
title: Altered MMTV-PyMT tumor vascularity in Mmp8-null mice.

description: Vascular density of tumors in early and late stage tumors as determined by Endomucin staining. The number of mice used for analyses were as following: 8 weeks; MMTV-PyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 5), MMTV-PyMT; Mmp8 null (KO, n = 5), and 10 weeks; MMTV-PyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 6) and MMTV-PyMT; Mmp8 null (KO, n = 4). Representative pictures of 10 week tumors are shown.* p &lt; 0.05, ** p &lt; 0.01.
DOI: 10.6084/m9.figshare.1162507.v1
title: Altered MMTV-PyMT tumor vascularity in Mmp8-null mice.

description: Vascular density of tumors in early and late stage tumors as determined by Endomucin staining. The number of mice used for analyses were as following: 8 weeks; MMTV-PyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 5), MMTV-PyMT; Mmp8 null (KO, n = 5), and 10 weeks; MMTV-PyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 6) and MMTV-PyMT; Mmp8 null (KO, n = 4). Representative pictures of 10 week tumors are shown.* p &lt; 0.05, ** p &lt; 0.01.
DOI: 10.6084/m9.figshare.1162492
title: MMP-8 ablation perturbs the tumor protease web at the protein level.

description: A) MMP-3 protein expression in tumor tissue at 14 weeks of age as determined by western blotting. Quantification of 3 biological replicates per genotype, normalized to Hsc70 and compared to PyMT wild-type (WT). 2-tailed unpaired t-test, mean ± sem. B) Tumor expression of MMP-2 and MMP-9 forms by gelatin Zymography at 10 and 14 weeks of age. 2-tailed unpaired t-test; AU, arbitrary unit; FC, fold change; ns, non-significant
DOI: 10.6084/m9.figshare.1162505.v1
title: Loss of MMP-8 accelerates tumor onset; promotes progression, tumor size and lung macrometastases in the MMTV-PyMT model.

description: A) Detection of first palpable tumors of MMTV-PyMT; Mmp8 wild-type (WT, n = 17), MMTV-PyMT; Mmp8 heterozygote (HET, n = 30) and MMTV-PyMT; Mmp8 null (KO, n = 10) mice. Mean ± sem, 2-tailed unpaired t-test; * p &lt; 0.05; ** p &lt; 0.01. B) Tumor progression determined by palpation of all 10 mammary glands from day 21 to day 98 for MMTV-PyMT; Mmp8 wild-type (WT, n = 26), heterozygote (HET, n = 34) and null (KO, n = 21) mice. C) Tumor size distribution (0, &lt; 0.5, 0.5-1, &gt;1 cm) at 10 weeks of age for MMTV-PyMT; Mmp8 wild-type (WT, n = 26), MMTV-PyMT; Mmp8 heterozygote (HET, n = 34) and MMTV-PyMT; Mmp8 null (KO, n = 21) mice; and at 14 weeks of age for MMTV-PyMT; Mmp8 wild-type (WT, n = 22), MMTV-PyMT; Mmp8 heterozygote (HET, n = 30) and MMTV-PyMT; Mmp8 null (KO, n = 16) mice. Chi-square test, * p &lt; 0.01. D) Number of lung macrometastases assessed at 14 weeks of age for MMTVPyMT; Mmp8 wild-type (WT, n = 4), MMTV-PyMT; Mmp8 heterozygote (HET, n = 4) and MMTV-PyMT; Mmp8 null (KO, n = 2) mice. Left panel of representative pictures depicts the top and bottom of all lung lobes (1 lobe of the left lung, 4 lobes of the right lung). Black solid arrows = smaller macrometastases, white solid arrows = larger macrometastases. Mean ± sem, 2-tailed unpaired t-test; ** p &lt; 0.01.
DOI: 10.6084/m9.figshare.1162469
title: James Hector and the first geological maps of New Zealand

description: James Hector produced the first geological map of New Zealand in 1865, based on local surveys by Ferdinand Hochstetter (Auckland and Nelson), J. Coutts Crawford (Wellington), Julius Haast (Canterbury) and his own mapping in Otago. Three updated versions of the map were produced in 1869, 1873 and 1884. Under Hector's direction, the New Zealand Geological Survey delineated the main geological features of New Zealand, but it was to be many years before the Alpine Fault was recognised and the problems of dating and correlating the older rocks were resolved.
DOI: 10.6084/m9.figshare.1162499.v2
title: Loss of MMP-8 affects MMTV-PyMT neutrophil, but not macrophage, infiltration and expression of pro-inflammatory mediators.

description: A) Number of macrophages/mm2 and neutrophils/mm2 in early and late stage tumors as determined by staining for F4/80 and Ly6B.2, respectively. The number of mice used for analyses of macrophage and neutrophil infiltration respectively were at 6 weeks: Mmp8 wild-type (WT, n = 5, 5), heterozygote (HET, n = 4,3) and null (KO, n = 2,3); 8 weeks: Mmp8 wild-type (WT, n = 4,5), heterozygote (HET, n = 6,5), null (KO, n = 4,5) and at 10 weeks: Mmp8 wild-type (WT, n = 5,5), heterozygote (HET, n = 5,5) and null (KO, n = 4,4).* p &lt; 0.05, ** p &lt; 0.01. One representative image of macrophage and neutrophil staining is shown for each genotype at 10 weeks of age. B) Relative RNA expression of macrophage marker CD68, IL-6 and CXCL5/LIX, normalized to 18S rRNA, throughout disease progression (6–14 weeks of age).
DOI: 10.6084/m9.figshare.1162469.v1
title: James Hector and the first geological maps of New Zealand

description: James Hector produced the first geological map of New Zealand in 1865, based on local surveys by Ferdinand Hochstetter (Auckland and Nelson), J. Coutts Crawford (Wellington), Julius Haast (Canterbury) and his own mapping in Otago. Three updated versions of the map were produced in 1869, 1873 and 1884. Under Hector's direction, the New Zealand Geological Survey delineated the main geological features of New Zealand, but it was to be many years before the Alpine Fault was recognised and the problems of dating and correlating the older rocks were resolved.
DOI: 10.6084/m9.figshare.1162499.v1
title: Loss of MMP-8 affects MMTV-PyMT neutrophil, but not macrophage, infiltration and expression of Mmp8-null pro-inflammatory mediators.

description: A) Number of macrophages/mm2 and neutrophils/mm2 in early and late stage tumors as determined by staining for F4/80 and Ly6B.2, respectively. The number of mice used for analyses of macrophage and neutrophil infiltration respectively were at 6 weeks: Mmp8 wild-type (WT, n = 5, 5), heterozygote (HET, n = 4,3) and null (KO, n = 2,3); 8 weeks: Mmp8 wild-type (WT, n = 4,5), heterozygote (HET, n = 6,5), null (KO, n = 4,5) and at 10 weeks: Mmp8 wild-type (WT, n = 5,5), heterozygote (HET, n = 5,5) and null (KO, n = 4,4).* p &lt; 0.05, ** p &lt; 0.01. One representative image of macrophage and neutrophil staining is shown for each genotype at 10 weeks of age. B) Relative RNA expression of macrophage marker CD68, IL-6 and CXCL5/LIX, normalized to 18S rRNA, throughout disease progression (6–14 weeks of age).
DOI: 10.6084/m9.figshare.1162439
title: tßh mutant flies walk slower and deviate less from stripes in Buridan's paradigm.

description: <strong>A. Buridan’s paradigm.</strong> The platform in the middle of the arena is surrounded by water and illuminated with bright white light from behind. Two black opposite stripes are fixed to the arena wall. The centroid position of the fly was recorded by custom tracking software. All data are obtained from 5 min of uninterrupted walk. Data were analyzed using CeTrAn v.4 (https://github.com/jcolomb/CeTrAn/releases/tag/v.4). <strong>B. Flies.</strong> tßhnM18 mutant and their genetic background control w+ (Schwaerzel et al., 2003) are crossed with CantonS wild type (P). One to two days old male flies were CO2-anesthetized (F1) and their wings were clipped at two thirds of their length. The flies recovered in the food vials overnight. Individuals were captured using a fly aspirator and transferred into the experimental setup on the center of the platform. The platform was cleaned with 70% ethanol after each experiment to minimize nonspecific effects. <strong>C. Mean of walking speed.</strong> A median of walking speed (traveled distance over time) was calculated for each fly. The mean of all flies is depicted in the graphs ± standard error of the mean. The tßh mutant males walk significantly slower than the wild type males (Welch Two-Sample t-Test, p = 2*10-8). <strong>D. Stripe deviation quantifies fixation behavior.</strong> It corresponds to the angle between the velocity vector and a vector pointing from the fly position towards the center of the stripe in front of the fly. Data are depicted as medians (bar), the 75%- and 25%-quartiles (box), and total data range (whiskers) excluding outliers outside the 1.5 times the interquartile range (points). Stripe deviation is significantly smaller in tßh mutant males compared to controls (Wilcoxon rank sum test, p = 4*10-10), meaning they fixated the stripes better than control flies. Numbers inside the graphs indicate the sample size. For methodological details see Colomb et al. (2012). <strong>References:</strong> Colomb, J., Reiter, L., Blaszkiewicz, J., Wessnitzer, J., & Brembs, B. (2012). Open source tracking and analysis of adult Drosophila locomotion in Buridan’s paradigm with and without visual targets. PloS One, 7(8), e42247. doi:10.1371/journal.pone.0042247 Schwaerzel, M., Monastirioti, M., Scholz, H., Friggi-Grelin, F., Birman, S., & Heisenberg, M. (2003). Dopamine and octopamine differentiate between aversive and appetitive olfactory memories in Drosophila. The Journal of Neuroscience : The Official Journal of the Society for Neuroscience, 23(33), 10495–502.
DOI: 10.6084/m9.figshare.1162439.v1
title: tßh mutant flies walk slower and deviate less from stripes in Buridan's paradigm.

description: <strong>A. Buridan’s paradigm.</strong> The platform in the middle of the arena is surrounded by water and illuminated with bright white light from behind. Two black opposite stripes are fixed to the arena wall. The centroid position of the fly was recorded by custom tracking software. All data are obtained from 5 min of uninterrupted walk. Data were analyzed using CeTrAn v.4 (https://github.com/jcolomb/CeTrAn/releases/tag/v.4). <strong>B. Flies.</strong> tßhnM18 mutant and their genetic background control w+ (Schwaerzel et al., 2003) are crossed with CantonS wild type (P). One to two days old male flies were CO2-anesthetized (F1) and their wings were clipped at two thirds of their length. The flies recovered in the food vials overnight. Individuals were captured using a fly aspirator and transferred into the experimental setup on the center of the platform. The platform was cleaned with 70% ethanol after each experiment to minimize nonspecific effects. <strong>C. Mean of walking speed.</strong> A median of walking speed (traveled distance over time) was calculated for each fly. The mean of all flies is depicted in the graphs ± standard error of the mean. The tßh mutant males walk significantly slower than the wild type males (Welch Two-Sample t-Test, p = 2*10-8). <strong>D. Stripe deviation quantifies fixation behavior.</strong> It corresponds to the angle between the velocity vector and a vector pointing from the fly position towards the center of the stripe in front of the fly. Data are depicted as medians (bar), the 75%- and 25%-quartiles (box), and total data range (whiskers) excluding outliers outside the 1.5 times the interquartile range (points). Stripe deviation is significantly smaller in tßh mutant males compared to controls (Wilcoxon rank sum test, p = 4*10-10), meaning they fixated the stripes better than control flies. Numbers inside the graphs indicate the sample size. For methodological details see Colomb et al. (2012). <strong>References:</strong> Colomb, J., Reiter, L., Blaszkiewicz, J., Wessnitzer, J., & Brembs, B. (2012). Open source tracking and analysis of adult Drosophila locomotion in Buridan’s paradigm with and without visual targets. PloS One, 7(8), e42247. doi:10.1371/journal.pone.0042247 Schwaerzel, M., Monastirioti, M., Scholz, H., Friggi-Grelin, F., Birman, S., & Heisenberg, M. (2003). Dopamine and octopamine differentiate between aversive and appetitive olfactory memories in Drosophila. The Journal of Neuroscience : The Official Journal of the Society for Neuroscience, 23(33), 10495–502.
DOI: 10.6084/m9.figshare.1162437
title: Drosophila sugar response is increased by starvation duration and sucrose concentration in a locomotion-independent proboscis extension test.

description: <strong>A. Proboscis extension response assay.</strong> One to two days old CantonS flies of mixed gender were starved for the indicated time with ad libitum access to water. Four hours before testing, they were glued to a copper hook between head and thorax. For the test, the hook was fixed to clamp which was attached to a rack. In this locomotion-independent assay, all tarsi can be stimulated with no stress or pressure on abdomen by a serial dilution of seven increasing sucrose concentrations (0%, 0.1%, 0.3%, 0.6%, 1%, 3%, 10%, 30%, 30% to labellum). <strong>B. The proportion of flies</strong> that extended proboscis after being stimulated at all the tarsi. Flies either responding to the first (water) or not responding to the last 30% to the labellum were excluded from the data analysis. The proportion of responding flies increases not only with increasing sucrose concentration but also with increasing starvation time of 21 hours compared to 14 hours. <strong>C. The response index</strong> is significantly higher after 21 hours compared to 14 hours of starvation indicated by asterisk (Wilcoxon rank sum test, p &lt; 0.05) and was calculated by summing the positive proboscis extension responses to all the seven stimulations and are illustrated as medians (bar), the 75%- and 25%-quartiles (box) and the total data range (whiskers). Numbers inside the boxes indicate sample sizes.
DOI: 10.6084/m9.figshare.1162437.v1
title: Drosophila sugar response is increased by starvation duration and sucrose concentration in a locomotion-independent proboscis extension test.

description: <strong>A. Proboscis extension response assay.</strong> One to two days old CantonS flies of mixed gender were starved for the indicated time with ad libitum access to water. Four hours before testing, they were glued to a copper hook between head and thorax. For the test, the hook was fixed to clamp which was attached to a rack. In this locomotion-independent assay, all tarsi can be stimulated with no stress or pressure on abdomen by a serial dilution of seven increasing sucrose concentrations (0%, 0.1%, 0.3%, 0.6%, 1%, 3%, 10%, 30%, 30% to labellum). <strong>B. The proportion of flies</strong> that extended proboscis after being stimulated at all the tarsi. Flies either responding to the first (water) or not responding to the last 30% to the labellum were excluded from the data analysis. The proportion of responding flies increases not only with increasing sucrose concentration but also with increasing starvation time of 21 hours compared to 14 hours. <strong>C. The response index</strong> is significantly higher after 21 hours compared to 14 hours of starvation indicated by asterisk (Wilcoxon rank sum test, p &lt; 0.05) and was calculated by summing the positive proboscis extension responses to all the seven stimulations and are illustrated as medians (bar), the 75%- and 25%-quartiles (box) and the total data range (whiskers). Numbers inside the boxes indicate sample sizes.
DOI: 10.6084/m9.figshare.1160721
title: High Paying Low Volume Tourism in Northern Botswana

description: Data set with tourism potential based on wildlife biomass and diversity for northern Botswana. Data is per 12' grid and includes mean wildlife biomass and number of species per grid for surveys from 1994 to 1999, and from 2001 to 2007.
DOI: 10.6084/m9.figshare.1160721.v1
title: High Paying Low Volume Tourism in Northern Botswana

description: Data set with tourism potential based on wildlife biomass and diversity for northern Botswana. Data is per 12' grid and includes mean wildlife biomass and number of species per grid for surveys from 1994 to 1999, and from 2001 to 2007.
DOI: 10.6084/m9.figshare.1160654
title: Python notebook describing steps to reproduce results

description: Open notebook for full details
DOI: 10.6084/m9.figshare.1160601
title: Simulation files and results without missing data

description: <strong>Publication:</strong> Wright AM and Hillis DM (2014). Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data. PLOS ONE. <strong>Contents:</strong> Data sets without missing data, and the phylogenetic trees estimated from these sets. Details: These data sets were simulated along the tree in Fig. 1 of the paper. No missing data distribution was imposed on these data sets.
DOI: 10.6084/m9.figshare.1160654.v1
title: Python notebook describing steps to reproduce results

description: Open notebook for full details
DOI: 10.6084/m9.figshare.1160536
title: Activity level estimation data

description: Camera-trapping data from Barro Colorado Island, Panama, used in Rowcliffe, J.M., Kays, R., Kranstauber, B., Carbone, C. & Jansen, P.A. Quantifying levels of animal activity using camera-trap data, Methods in Ecology and Evolution, accepted August 2014.
DOI: 10.6084/m9.figshare.1160541
title: Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

description: Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data. PLOS ONE.
DOI: 10.6084/m9.figshare.1160654.v2
title: Python notebook describing steps to reproduce results

description: Open notebook for full details
DOI: 10.6084/m9.figshare.1160535
title: BCI time of detection data

description: The times of day at which each camera-trap record occured. COLUMN DESCRIPTIONS:<br>species: species common name<br>time: decimal time of day of record (midnight at 0/1)
DOI: 10.6084/m9.figshare.1160534
title: BCI speed data

description: Speeds of movement across the camera trap field of view for a subset of the records in BCItime.txt. COLUMN DESCRIPTIONS:<br>species: species common name<br>time: decimal time of day of passage (midnight at 0/1)<br>speed: passage speed (m/s)
DOI: 10.6084/m9.figshare.1160541.v1
title: Mk Model Paper

description: Files from Wright, AM and Hillis, DM, 2014.
DOI: 10.6084/m9.figshare.1160654.v3
title: Python notebook describing steps to reproduce results

description: Open notebook for full details
DOI: 10.6084/m9.figshare.1160534.v1
title: BCI speed data

description: Speeds of movement across the camera trap field of view for a subset of the records in BCItime.txt. COLUMN DESCRIPTIONS:<br>species: species common name<br>time: decimal time of day of passage (midnight at 0/1)<br>speed: passage speed (m/s)
DOI: 10.6084/m9.figshare.1160535.v1
title: BCI time of detection data

description: The times of day at which each camera-trap record occured. COLUMN DESCRIPTIONS:<br>species: species common name<br>time: decimal time of day of record (midnight at 0/1)
DOI: 10.6084/m9.figshare.1160541.v2
title: Mk Model Paper

description: Files from Wright, AM and Hillis, DM, 2014.
DOI: 10.6084/m9.figshare.1160654.v4
title: Python notebook describing steps to reproduce results

description: Open notebook for full details
DOI: 10.6084/m9.figshare.1160533
title: BCI detection data

description: Animal positions relative to camera traps when first visible in images, together with covariates used to model detectability. COLUMN DESCRIPTIONS:<br>distance: linear distance from camera on first trigger (m)<br>angle: radial distance from camera line of sight on first trigger (radians)<br>species: species common name<br>season: factor defining season (E=early ie dry, M=mid ie wetter, L=late ie wettest)<br>mass: species average body mass (kg)<br>time: factor defining whether day or night
DOI: 10.6084/m9.figshare.1160541.v3
title: Mk Model Paper

description: Files from Wright, AM and Hillis, DM, 2014.
DOI: 10.25934/00002509.0
title: Available IPD datapackage for study 'A Multicenter, Randomized, Double-Blind, Active-Controlled Study to Evaluate the Durability of the Efficacy and Safety of Alogliptin Compared to Glipizide When Used in Combination With Metformin in Subjects With Type 2 Diabetes'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.1160541.v4
title: Mk Model Paper

description: Files from Wright, AM and Hillis, DM, 2014.