cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.959516
title: Seawater carbonate chemistry and the antipredator behaviour of a reef fish

description: The appropriate behavioural response to predation risk is critical to survival; however, behavioural responses can be subjected to trade-offs. For example, individuals may engage in riskier foraging behaviour to secure sufficient energy if resources are limited. Additionally, elevated CO2 can influence foraging and antipredator behaviour of marine organisms. Yet, how the availability of energetic resources may influence antipredator behaviour in an elevated CO2environment is unknown. We tested the effects of food ration (low and high: 4 and 8% of body weight per day, respectively) on antipredator behaviour at ambient (489 µatm) and elevated (1022 µatm) CO2 in juvenile Amphiprion percula at 50 d post-hatching. Juveniles were from parents held at either ambient or elevated CO2, as parental exposure can influence phenotypic response in offspring. Antipredator behaviour was severely impaired by elevated CO2, with juveniles reared at elevated CO2 exhibiting no change in feeding rate in the presence of the predator cue compared with a &gt;67% reduction in feeding rate in ambient CO2 fish. By contrast, food ration had a minor effect on the change in feeding rate in response to the predator cue, with only a 2.3% difference between high and low food ration fish. The effect of elevated CO2 on antipredator behaviour of juveniles was not influenced by food ration. Parental exposure to elevated CO2 influenced the baseline feeding rate and exhibited a small carry-over effect in elevated CO2 juveniles. These results suggest that reef fish could exhibit riskier behaviour at elevated CO2 levels, regardless of the energetic resources available.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-05-29.
DOI: 10.1594/pangaea.906023
title: Seawater carbonate chemistry and composition of intertidal and subtidal communities

description: Rising atmospheric concentrations of carbon dioxide are causing surface seawater pH and carbonate ion concentrations to fall in a process known as ocean acidification. To assess the likely ecological effects of ocean acidification we compared intertidal and subtidal marine communities at increasing levels of pCO2 at recently discovered volcanic seeps off the Pacific coast of Japan (34° N). This study region is of particular interest for ocean acidification research as it has naturally low levels of surface seawater pCO2 (280–320 µatm) and is located at a transition zone between temperate and sub-tropical communities. We provide the first assessment of ocean acidification effects at a biogeographic boundary. Marine communities exposed to mean levels of pCO2 predicted by 2050 experienced periods of low aragonite saturation and high dissolved inorganic carbon. These two factors combined to cause marked community shifts and a major decline in biodiversity, including the loss of key habitat-forming species, with even more extreme community changes expected by 2100. Our results provide empirical evidence that near-future levels of pCO2 shift sub-tropical ecosystems from carbonate to fleshy algal dominated systems, accompanied by biodiversity loss and major simplification of the ecosystem.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-09-18.
description: Supplement to: Agostini, Sylvain; Harvey, Ben P; Wada, Shigeki; Kon, Koetsu; Milazzo, Marco; Inaba, Kazuo; Hall-Spencer, Jason M (2018): Ocean acidification drives community shifts towards simplified non-calcified habitats in a subtropical−temperate transition zone. Scientific Reports, 8(1)
DOI: 10.1594/pangaea.949249
title: Seawater carbonate chemistry and gamete quality and window of fertilisation in Atlantic cod

description: Impacts of global warming and CO2-related ocean acidification (OA) on fish reproduction may include chronic effects on gametogenesis and gamete quality, as well as acute effects on external fertilisation. Here, temperature thresholds and OA-sensitivity of gametogenesis and fertilisation were investigated in Atlantic cod, Gadus morhua. Three broodstock groups of farmed cod (FC 1-3) were exposed for three months to three maturation conditions (FC 1: Control, 6°C/400 μatm CO2; FC 2: Warming, 9.5°C/400 μatm; FC 3: Warming & OA, 9.5°C/1100 μatm). In addition, a broodstock group of wild cod (WC) was kept at control conditions to compare the acute temperature window of fertilisation with that of farmed cod (FC 1). Fertilisations were conducted in a temperature-gradient table at ten temperatures (between −1.5 and 12°C) and two CO2 levels (400/1100 μatm). In FC 1 and WC, fertilisation success was relatively high between 0.5°C and 11°C (TRange of ~10.5°C), indicating similar gamete quality in farmed and wild broodstocks kept at control conditions. Exposure of farmed broodstocks to warming (FC 2) and the combination of warming and OA (FC 3) impaired gamete quality, causing a reduction in fertilisation success of −20% (FC 2) and −42% (FC 3) compared to FC 1. The acute temperature window of fertilisation narrowed from FC 1 (TRange = 10.4°C) to FC 2 (TRange = 8.8°C) and FC 3 (TRange = 5.9°C). Acute effects of CO2 on fertilisation success were not significant. This study demonstrates potential climate change impacts on gametogenesis and fertilisation in Atlantic cod, suggesting the loss of spawning habitat in the coming decades.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-09-30.
DOI: 10.1594/pangaea.769754
title: EPOCA Svalbard 2009 benthic experiment: Serripes study, 2009

description: Ocean acidification influences sediment/water nitrogen fluxes, possibly by impacting on the microbial process of ammonia oxidation. To investigate this further, undisturbed sediment cores collected from Ny Alesund harbour (Svalbard) were incubated with seawater adjusted to CO2 concentrations of 380, 540, 760, 1,120 and 3,000 µatm. DNA and RNA were extracted from the sediment surface after 14 days' exposure and the abundance of bacterial and archaeal ammonia oxidising (amoA) genes and transcripts quantified using quantitative polymerase chain reaction. While there was no change to the abundance of bacterial amoA genes, an increase to 760 µatm pCO2 reduced the abundance of bacterial amoA transcripts by 65 %, and this was accompanied by a shift in the composition of the active community. In contrast, archaeal amoA gene and transcript abundance both doubled at 3,000 µatm, with an increase in species richness also apparent. This suggests that ammonia oxidising bacteria and archaea in marine sediments have different pH optima, and the impact of elevated CO2 on N cycling may be dependent on the relative abundances of these two major microbial groups. Further evidence of a shift in the balance of key N cycling groups was also evident: the abundance of nirS-type denitrifier transcripts decreased alongside bacterial amoA transcripts, indicating that NO3 ? produced by bacterial nitrification fuelled denitrification. An increase in the abundance of Planctomycete-specific 16S rRNA, the vast majority of which grouped with known anammox bacteria, was also apparent at 3,000 µatm pCO2. This could indicate a possible shift from coupled nitrification-denitrification to anammox activity at elevated CO2.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-07.
description: Supplement to: Tait, Karen; Laverock, Bonnie; Widdicombe, Stephen (2013): Response of an Arctic Sediment Nitrogen Cycling Community to Increased CO2. Estuaries and Coasts, 37(3), 724-735
DOI: 10.1594/pangaea.919851
title: Seawater carbonate chemistry and growth and feeding of deep-sea coral Lophelia pertusa

description: The global decrease in seawater pH known as ocean acidification has important ecological consequences and is an imminent threat for numerous marine organisms. Even though the deep sea is generally considered to be a stable environment, it can be dynamic and vulnerable to anthropogenic disturbances including increasing temperature, deoxygenation, ocean acidification and pollution. Lophelia pertusa is among the better-studied cold-water corals but was only recently documented along the US West Coast, growing in acidified conditions. In the present study, coral fragments were collected at ∼300 m depth along the southern California margin and kept in recirculating tanks simulating conditions normally found in the natural environment for this species. At the collection site, waters exhibited persistently low pH and aragonite saturation states (Omega arag) with average values for pH of 7.66 +- 0.01 and Omega arag of 0.81 +- 0.07. In the laboratory, fragments were grown for three weeks in “favorable” pH/Omega arag of 7.9/1.47 (aragonite saturated) and “unfavorable” pH/ Omega arag of 7.6/0.84 (aragonite undersaturated) conditions. There was a highly significant treatment effect (P &lt; 0.001) with an average% net calcification for favorable conditions of 0.023 +- 0.009%/d and net dissolution of −0.010 +- 0.014%/d for unfavorable conditions. We did not find any treatment effect on feeding rates, which suggests that corals did not depress feeding in low pH/ Omega arag in an attempt to conserve energy. However, these results suggest that the suboptimal conditions for L. pertusa from the California margin could potentially threaten the persistence of this cold-water coral with negative consequences for the future stability of this already fragile ecosystem.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-06-12.
DOI: 10.1594/pangaea.875891
title: Seawater carbonate chemistry and ecosystem calcification, community production of coral reef

description: Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a two-week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the non-bleaching period was 8.5, significantly elevated above that of the surrounding open ocean (8.0-8.1) as a consequence of daytime NEP (up to 112 mmol C/m**2/h). Diurnal-averaged NEC was 390?+/-?90 mmol CaCO3/m**2/day, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C/m**2/h. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-06-05.
description: Supplement to: DeCarlo, Thomas M; Cohen, Anne L; Wong, George T F; Shiah, Fuh Kwo; Lentz, S J; Davis, Kristen A; Shamberger, K E F; Lohmann, Pat (2017): Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification. Journal of Geophysical Research: Oceans, 122, 745–761
DOI: 10.1594/pangaea.964549
title: Seawater carbonate chemistry and Oikopleura dioica, phytoplankton, and carbon export during the KOSMOS Bergen mesocosm experiment on ocean acidification (Raunefjord, Norway, 2015)

description: We conducted an experiment with large volume in situ mesocosms (~55–60 m3 and 21 m depth) in Raunefjord (Bergen), Norway in 2015 to investigate how ocean acidification (OA) extreme events affect food web structure and carbon export in a natural plankton community, particularly focusing on the keystone species Oikopleura dioica, a globally abundant appendicularian.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-01-04.
DOI: 10.1594/pangaea.964582
title: Seawater carbonate chemistry and growth and photophysiology of two tropical reef macroalgae

description: Focusing on algal taxa from two different functional groups on Caribbean coral reefs, we exposed fleshy (Dictyota spp.) and calcifying (Halimeda tuna) macroalgae to ambient and low seawater pH for 25 days in an outdoor experimental system in the Florida Keys. We quantified algal growth, calcification, photophysiology, and DOC production across pH treatments.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-01-05.
DOI: 10.1594/pangaea.912222
title: Seawater carbonate chemistry and coral calcification

description: Coral reefs are constructed by calcifiers that precipitate calcium carbonate to build their shells or skeletons through the process of calcification. Accurately assessing coral calcification rates is crucial to determine the health of these ecosystems and their response to major environmental changes such as ocean warming and acidification. Several approaches have been used to assess rates of coral calcification but there is a real need to compare these approaches in order to ascertain that high quality and intercomparable results can be produced. Here, we assessed four methods (total alkalinity anomaly, calcium anomaly, 45Ca incorporation and 13C incorporation) to determine coral calcification of the reef-building coral Stylophora pistillata. Given the importance of environmental conditions on this process, the study was performed under two pH (ambient and low level) and two light (light and dark) conditions. Under all conditions, calcification rates estimated using the alkalinity and calcium anomaly techniques as well as 45Ca incorporation were highly correlated. Such a strong correlation between the alkalinity anomaly and 45Ca incorporation techniques has not been observed in previous studies and most probably results from improvements described in the present paper. The only method which provided calcification rates significantly different from the other three techniques was 13C incorporation. Calcification rates based on this method were consistently higher than those measured using the other techniques. Although reasons for these discrepancies remain unclear, the use of this technique for assessing calcification rates in corals is not recommended without further investigations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-17.
DOI: 10.1594/pangaea.718862
title: Seawater carbonate chemistry and encrusting algal communities duirng a mesocosm experiment, 2007

description: Owing to anthropogenic emissions, atmospheric concentrations of carbon dioxide could almost double between 2006 and 2100 according to business-as-usual carbon dioxide emission scenarios. Because the ocean absorbs carbon dioxide from the atmosphere, increasing atmospheric carbon dioxide concentrations will lead to increasing dissolved inorganic carbon and carbon dioxide in surface ocean waters, and hence acidification and lower carbonate saturation states. As a consequence, it has been suggested that marine calcifying organisms, for example corals, coralline algae, molluscs and foraminifera, will have difficulties producing their skeletons and shells at current rates, with potentially severe implications for marine ecosystems, including coral reefs. Here we report a seven-week experiment exploring the effects of ocean acidification on crustose coralline algae, a cosmopolitan group of calcifying algae that is ecologically important in most shallowwater habitats. Six outdoor mesocosms were continuously supplied with sea water from the adjacent reef and manipulated to simulate conditions of either ambient or elevated seawater carbon dioxide concentrations. The recruitment rate and growth of crustose coralline algae were severely inhibited in the elevated carbon dioxide mesocosms. Our findings suggest that ocean acidification due to human activities could cause significant change to benthic community structure in shallow-warm-water carbonate ecosystems.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.869455
title: Effects of temperature and ocean acidification on shell characteristics of Argopecten purpuratus: implications for scallop aquaculture in an upwelling-influenced area

description: Coastal upwelling regions already constitute hot spots of ocean acidification as naturally acidified waters are brought to the surface. This effect could be exacerbated by ocean acidification and warming, both caused by rising concentrations of atmospheric CO2. Along the Chilean coast, upwelling supports highly productive fisheries and aquaculture activities. However, during recent years, there has been a documented decline in the national production of the native scallop Argopecten purpuratus. We assessed the combined effects of temperature and pCO2-driven ocean acidification on the growth rates and shell characteristics of this species farmed under the natural influence of upwelling waters occurring in northern Chile (30°S, Tongoy Bay). The experimental scenario representing current conditions (14 °C, pH 8.0) were typical of natural values recorded in Tongoy Bay, whilst conditions representing the low pH scenario were typical of an adjacent upwelling area (pH 7.6). Shell thickness, weight, and biomass were reduced under low pH (pH 7.7) and increased temperature (18 °C) conditions. At ambient temperature (14 °C) and low pH, scallops showed increased shell dissolution and low growth rates. However, elevated temperatures ameliorated the impacts of low pH, as evidenced by growth rates in both pH treatments at the higher temperature treatment that were not significantly different from the control treatment. The impact of low pH at current temperature on scallop growth suggests that the upwelling could increase the time required for scallops to reach marketable size. Mortality of farmed scallops is discussed in relation to our observations of multiple environmental stressors in this upwelling-influenced area.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-12-13.
description: Supplement to: Lagos, Nelson A; Benítez, Samanta; Duarte, Cristian; Lardies, Marco A; Broitman, Bernardo R; Tapia, Christian; Tapia, Pamela; Widdicombe, Steve; Vargas, Cristian A (2016): Effects of temperature and ocean acidification on shell characteristics of Argopecten purpuratus: implications for scallop aquaculture in an upwelling-influenced area. Aquaculture Environment Interactions, 8, 357-370