cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3814599.v1
title: ELE-00371-2016 Si-DIN data set for Ecology Letters.csv

description: Columns in the CSV file are (in order from left to right) lake number in the Iowa state lake surevey, lake name, county, the UTM zone of geographical coordinates of each lake, the easting in meters, the northing in meters, the dissolved silica concentration in micro-molar units (as Si), the dissolved inorganic nitrogen concentration in micro-molar units (as N), the ratio of the two preceding concentrations, the average biomass of diatoms as a percentage of total phytoplankton, the lake area as a percentage of the total watershed area, and agricultural land as a percentage of the watershed.Surface water sampling was performed three times for each lake during the period of greatest flow (May-August 2001-2005). Nutrient and algal community data were determined as summer averages for the upper mixed zone at the deepest point in each lake. Si was determined as dissolved silicate, and DIN was determined as the sum of nitrite (NO<sub>2</sub><sup>-</sup>), nitrate (NO<sub>3</sub><sup>-</sup>), ammonia (NH<sub>3</sub>) and ammonium (NH<sub>4</sub><sup>+</sup>) using standard methods (Eaton et al. 1998) and second derivative spectroscopy (Crumpton et al. 1992) for NO<sub>2</sub><sup>-</sup> and NO<sub>3</sub><sup>-</sup>. We estimated the fraction of the phytoplankton composed of diatoms in each lake by sampling on the same days as water chemistry samples were extracted, then settling, identifying, and measuring biomasses of plankton in subsamples by standard methods (Hillebrand et al. 1999). In lakes we have studied year-round, we found no spring bloom of diatoms, and our samples were taken during the time of year when maximal phytoplankton biomass is expected. Therefore, our diatom analyses reflect the composition during the period when diatom sedimentation is most likely. <b>Geographical analysis.</b> Watershed boundaries and areas under agricultural land uses were analyzed using GIS of the temporally closest available digital coverages (2002), 30 meter resolution, Landsat 5 TM imagery. Land cover types were according the the National Land Cover Database (2001; Homer et al. 2007). The total agricultural land in the watershed was considered to be the sum of maize and soybean land use, the land area in grazed and ungrazed grasslands, “other agriculture”, alfalfa, winter wheat, lush grass, conservation reserve lands, and barren lands, since all of these lands are usually used for cropping or pastureland in this region. The area of the watersheds and the lakes were measured from the same GIS layers in order to estimate the potential for hydraulic flushing of the lake basins.
DOI: 10.6084/m9.figshare.3814593
title: Gaussian Job Archive for C214H342O18

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814593.v1
title: Gaussian Job Archive for C214H342O18

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814587
title: Gaussian Job Archive for C214H342O18

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814587.v1
title: Gaussian Job Archive for C214H342O18

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814554.v1
title: PlosOne Data & Software Availability

description: Data & Software Availability for PlosOne<br><br>
DOI: 10.6084/m9.figshare.3814554.v2
title: PlosOne Data & Software Availability

description: Data & Software Availability for PlosOne<br><br>
DOI: 10.6084/m9.figshare.3814554.v4
title: PlosOne Data & Software Availability

description: Data & Software Availability for PlosOne<br><br>
DOI: 10.6084/m9.figshare.3814554.v3
title: PlosOne Data & Software Availability

description: Data & Software Availability for PlosOne<br><br>
DOI: 10.6084/m9.figshare.3814548
title: Evolutionary Decision Making Textual Analysis

description: A textual analysis performed for an article to be published in <i>Trends in Ecology and Evolution.</i> The analysis was cut in the drafting process, but the data obtained is archived here.
DOI: 10.6084/m9.figshare.3814530
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814530.v1
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814506
title: Gaussian Job Archive for C44H28N4Pt

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814506.v1
title: Gaussian Job Archive for C44H28N4Pt

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814497
title: Gaussian Job Archive for C44H28N4Pt

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814497.v1
title: Gaussian Job Archive for C44H28N4Pt

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814485
title: data

description: data
DOI: 10.6084/m9.figshare.3814485.v1
title: data

description: data
DOI: 10.6084/m9.figshare.3814476
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814476.v1
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814467
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814467.v1
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814458
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814458.v1
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814455
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814455.v1
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814452
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814452.v1
title: Gaussian Job Archive for C114H88N4PtS8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814449
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814449.v1
title: Gaussian Job Archive for C64H50S8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814428
title: Gaussian Job Archive for C164H124N4PtS24

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814428.v1
title: Gaussian Job Archive for C164H124N4PtS24

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814401
title: Gaussian Job Archive for C164H124N4PtS24

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814401.v1
title: Gaussian Job Archive for C164H124N4PtS24

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814395
title: Gaussian Job Archive for C110H88N4PtS12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814395.v1
title: Gaussian Job Archive for C110H88N4PtS12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814389
title: Gaussian Job Archive for C110H88N4PtS12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814389.v1
title: Gaussian Job Archive for C110H88N4PtS12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814383
title: Data for: "A shifting tide: Recommendations for incorporating science communication into graduate training"

description: This is the data for the manuscript: "<i>A shifting tide: Recommendations for incorporating science communication into graduate training</i>" published in Limnology and Oceanography Bulletin. Files are not publicly available due to privacy concerns.
DOI: 10.6084/m9.figshare.3814383.v2
title: Data for: "A shifting tide: Recommendations for incorporating science communication into graduate training"

description: This is the data for the manuscript: "<i>A shifting tide: Recommendations for incorporating science communication into graduate training</i>" published in Limnology and Oceanography Bulletin. Files are not publicly available due to privacy concerns.
DOI: 10.6084/m9.figshare.3814383.v1
title: New draft item

description: This is the data for the manuscript: "<i>A shifting tide: Recommendations for incorporating science communication into graduate training</i>" published in Limnology and Oceanography Bulletin. Files are not publicly available due to privacy concerns.
DOI: 10.6084/m9.figshare.3814362
title: Analysis and figures for: "A shifting tide: Recommendations for incorporating science communication into graduate training"

description: This is the code used to analyse the data and produce figures for the manuscript: "<i>A shifting tide: Recommendations for incorporating science communication into graduate training</i>" published in Limnology and Oceanography Bulletin
DOI: 10.6084/m9.figshare.3814362.v1
title: Analysis and figures for: "A shifting tide: Recommendations for incorporating science communication into graduate training"

description: This is the code used to analyse the data and produce figures for the manuscript: "<i>A shifting tide: Recommendations for incorporating science communication into graduate training</i>" published in Limnology and Oceanography Bulletin
DOI: 10.6084/m9.figshare.3814359
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814359.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814356
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814356.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814353
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814353.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3814341
title: Bud break of ash and maple trees in a forest near Birmensdorf/Switzerland (2012-2018)

description: Comparison of bud break of ash trees in a forest near Birmensdorf/ZH, Switzerland in the last five years (2012-2016) over the course of spring months. Chalara dieback of ash [Chalara fraxinea] (in German: Eschentriebsterben) destroys roughly 30% of the buds and this leads to a reduced leaf development in ashes.<br><br>
DOI: 10.6084/m9.figshare.3814341.v2
title: Bud break of ash and maple trees in a forest near Birmensdorf/Switzerland (2012-2018)

description: Comparison of bud break of ash trees in a forest near Birmensdorf/ZH, Switzerland in the last five years (2012-2016) over the course of spring months. Chalara dieback of ash [Chalara fraxinea] (in German: Eschentriebsterben) destroys roughly 30% of the buds and this leads to a reduced leaf development in ashes.<br><br>
DOI: 10.6084/m9.figshare.3814311
title: Immunomodulation by gastrointestinal carbon black nanoparticle exposure in ovalbumin T cell receptor transgenic mice

description: Humans could become exposed to carbon black nanoparticles (CBNPs) in consumer products or an occupational setting. In rodent models, acute respiratory, subcutaneous, and direct immune cell exposure to CBNPs has been shown to enhance allergic sensitization to co-administered ovalbumin (OVA) protein from chicken egg. However, little is known about the effects of ingested CBNPs on immunological responses and oral tolerance to food antigens. We hypothesized that ingestion of CBNPs would enhance the development of food allergy to OVA. Allergy prone DO11.10 mice were orally exposed to CBNPs every second day for 2 weeks (total dose 10.8 (LOW) or 108 μg (HI)), with and without (±) co-administered OVA. Systemic immune parameters were measured at necropsy. Exposure to OVA resulted in significant increases in serum anti-OVA IgG1, anti-OVA IgM, and anti-OVA IgA antibodies relative to vehicle control. Immunophenotyping revealed a reduction in the number of OVA-specific CD4<sup>+ </sup>T helper cells upon OVA ± CBNP<sup>HI</sup> treatment in the spleen. Yet, secretion of the allergy-associated Th2 cytokines IL-4, IL-9, and IL-13 was greater in OVA<sub>323-339</sub> peptide-pulsed splenocytes from OVA + CBNP<sup>HI</sup>-treated mice compared with control. Transcriptome analysis at necropsy of splenocytes from OVA + CBNP<sup>HI</sup> dose mice compared with OVA mice revealed increases in the allergy associated genes <i>Il4</i> and <i>Stat6</i> and decreases in <i>Csf3r</i> and <i>Retnlg</i>. Although oral exposure to high-dose CBNPs did not impact OVA-specific antibody production relative to OVA, we did observe increased expression of genes and cytokines associated with allergy in peripheral splenocytes. This work suggests that CBNP gastrointestinal exposure may potentiate allergy pathways.
DOI: 10.6084/m9.figshare.3814311.v1
title: Immunomodulation by gastrointestinal carbon black nanoparticle exposure in ovalbumin T cell receptor transgenic mice

description: Humans could become exposed to carbon black nanoparticles (CBNPs) in consumer products or an occupational setting. In rodent models, acute respiratory, subcutaneous, and direct immune cell exposure to CBNPs has been shown to enhance allergic sensitization to co-administered ovalbumin (OVA) protein from chicken egg. However, little is known about the effects of ingested CBNPs on immunological responses and oral tolerance to food antigens. We hypothesized that ingestion of CBNPs would enhance the development of food allergy to OVA. Allergy prone DO11.10 mice were orally exposed to CBNPs every second day for 2 weeks (total dose 10.8 (LOW) or 108 μg (HI)), with and without (±) co-administered OVA. Systemic immune parameters were measured at necropsy. Exposure to OVA resulted in significant increases in serum anti-OVA IgG1, anti-OVA IgM, and anti-OVA IgA antibodies relative to vehicle control. Immunophenotyping revealed a reduction in the number of OVA-specific CD4<sup>+ </sup>T helper cells upon OVA ± CBNP<sup>HI</sup> treatment in the spleen. Yet, secretion of the allergy-associated Th2 cytokines IL-4, IL-9, and IL-13 was greater in OVA<sub>323-339</sub> peptide-pulsed splenocytes from OVA + CBNP<sup>HI</sup>-treated mice compared with control. Transcriptome analysis at necropsy of splenocytes from OVA + CBNP<sup>HI</sup> dose mice compared with OVA mice revealed increases in the allergy associated genes <i>Il4</i> and <i>Stat6</i> and decreases in <i>Csf3r</i> and <i>Retnlg</i>. Although oral exposure to high-dose CBNPs did not impact OVA-specific antibody production relative to OVA, we did observe increased expression of genes and cytokines associated with allergy in peripheral splenocytes. This work suggests that CBNP gastrointestinal exposure may potentiate allergy pathways.
DOI: 10.6084/m9.figshare.3814305
title: Electrocoagulation as a key technique in the integrated urban water cycle – A case study in the centre of Spain

description: Electrocoagulation (EC) presents operational advantages over chemical coagulation, including no requirement for the addition of chemicals. This work compares the performance of electrocoagulation in two stages of the urban water cycle: drinking water production and wastewater regeneration. A case study focussed on the treatment of actual effluents from different locations in the centre of Spain is performed. It was observed that electrocoagulation with aluminium anodes is an efficient technique to remove turbidity and total organic carbon (TOC) from surface water and to deplete turbidity and <i>Escherichia coli</i> (<i>E. coli</i>) from urban treated wastewater (taken from the outlet of an urban wastewater treatment facility, WWTF). Although electrocoagulation can be applied to the treatment of both effluents, the technique is more efficient in the case of the production of drinking water from surface sources. This behaviour is related to the nature of the natural organic matters (NOM) present in both effluents.
DOI: 10.6084/m9.figshare.3814305.v1
title: Electrocoagulation as a key technique in the integrated urban water cycle – A case study in the centre of Spain

description: Electrocoagulation (EC) presents operational advantages over chemical coagulation, including no requirement for the addition of chemicals. This work compares the performance of electrocoagulation in two stages of the urban water cycle: drinking water production and wastewater regeneration. A case study focussed on the treatment of actual effluents from different locations in the centre of Spain is performed. It was observed that electrocoagulation with aluminium anodes is an efficient technique to remove turbidity and total organic carbon (TOC) from surface water and to deplete turbidity and <i>Escherichia coli</i> (<i>E. coli</i>) from urban treated wastewater (taken from the outlet of an urban wastewater treatment facility, WWTF). Although electrocoagulation can be applied to the treatment of both effluents, the technique is more efficient in the case of the production of drinking water from surface sources. This behaviour is related to the nature of the natural organic matters (NOM) present in both effluents.
DOI: 10.6084/m9.figshare.3814296
title: Forensic visualization of two Kwakwaka’wakw <i>ḱiḱw</i>

description: This study presents a forensic reconstruction of two Kwakwaka’wakw house posts (<i>ḱiḱw</i>) digitally reconstructed and visualized in their original viewing conditions. After demonstrating how the visual parameters of winter ceremonial activity would have significantly altered the appearance of the posts, I use research in optics and neuroscience to explain how light-dependent features of colour perception and face recognition facilitate such transformations.
DOI: 10.6084/m9.figshare.3814296.v2
title: Forensic visualization of two Kwakwaka’wakw <i>ḱiḱw</i>

description: This study presents a forensic reconstruction of two Kwakwaka’wakw house posts (<i>ḱiḱw</i>) digitally reconstructed and visualized in their original viewing conditions. After demonstrating how the visual parameters of winter ceremonial activity would have significantly altered the appearance of the posts, I use research in optics and neuroscience to explain how light-dependent features of colour perception and face recognition facilitate such transformations.
DOI: 10.6084/m9.figshare.3814296.v1
title: Forensic visualization of two Kwakwaka’wakw <i>k</i>́<i>iḱw</i>

description: This study presents a forensic reconstruction of two Kwakwaka’wakw house posts (<i>ḱiḱw</i>) digitally reconstructed and visualized in their original viewing conditions. After demonstrating how the visual parameters of winter ceremonial activity would have significantly altered the appearance of the posts, I use research in optics and neuroscience to explain how light-dependent features of colour perception and face recognition facilitate such transformations.
DOI: 10.6084/m9.figshare.3814275
title: Systems response profiles to two Rehmanniae Radix formulae in metabolic syndrome patients

description: To explore the effects of two Rehmanniae Radix formulae in patients with metabolic syndrome (MetS), a randomized controlled study was conducted. MetS patients were randomly assigned to receive either a classic Rehmanniae Six Formula (R6, or ‘Liu Wei Di Huang Wan’) or a novel multi-herbal Rehmanniae Radix containing formula SUB889 for 8 weeks. Western medicine related clinical parameters, Chinese medicine defined symptoms and syndromes as well as metabolomic profiles were evaluated at different time points.
DOI: 10.6084/m9.figshare.3814272
title: Data_final_Mother_ActiGraph.xlsx

description: Step measurements by Mother, ActiGraph and a hand tally + participant demographics<br>
DOI: 10.6084/m9.figshare.3814272.v1
title: Data_final_Mother_ActiGraph.xlsx

description: Step measurements by Mother, ActiGraph and a hand tally + participant demographics<br>
DOI: 10.6084/m9.figshare.3814245
title: Saliva_txt.rar

description: MaxQuant search output<br>
DOI: 10.6084/m9.figshare.3814245.v1
title: Saliva_txt.rar

description: MaxQuant search output<br>
DOI: 10.6084/m9.figshare.3814239
title: Similarity & Dissimilarity between Communities - Human feces, Pig feces, Hospital sewage - Different DNA Extraction Methods

description: The similarity and dissimilarity within and between microbial communities - from human feces, pig feces, and hospital sewage, processed with seven different DNA extraction protocols - was assessed using Jaccard and Bray Curtis distances, respectively. <br>These figures relate to the article: <br>Berith E. Knudsen, Lasse Bergmark, Patrick Munk, Oksana Lukjancenko, Anders Priemé, Frank M. Aarestrup, Sünje J. Pamp (2016) Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition. <b><i>mSystems</i></b> Oct 2016, 1 (5) e00095-16; DOI: 10.1128/mSystems.00095-16 http://msystems.asm.org/content/1/5/e00095-16