cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2737708.08fu
title: SH2737708.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2737709.08fu
title: SH2737709.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.8795606.v1
title: Additional file 1: of Pleural thickening on screening chest X-rays: a single institutional study

description: Table S1. Top 10 most common abnormal findings on screening chest X-rays. Table S2. Distribution and laterality of pleural thickening. Table S3. Pleural thickening and sex. Table S4. Pleural thickening and age distribution. Table S5. Pleural thickening and smoking status. Table S6. Pleural thickening and BMI. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8795591
title: Additional file 9: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Comparison of the pathogenicity proteins of P. citricarpa and P. capitalensis. List of exclusive and common pathogenicity proteins identified after comparison of P. citricarpa and P. capitalensis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8795588
title: Additional file 8: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Pathogenicity proteins of P. capitalensis. List of P. capitalensis exclusive proteins displaying similarity with subjects in the pathogen-host interaction gene database (PHI-base). (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8795591.v1
title: Additional file 9: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Comparison of the pathogenicity proteins of P. citricarpa and P. capitalensis. List of exclusive and common pathogenicity proteins identified after comparison of P. citricarpa and P. capitalensis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8795582
title: Additional file 7: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Pathogenicity proteins of P. citricarpa. List of P. citricarpa exclusive proteins displaying similarity with subjects in the pathogen-host interaction gene database (PHI-base). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8795588.v1
title: Additional file 8: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Pathogenicity proteins of P. capitalensis. List of P. capitalensis exclusive proteins displaying similarity with subjects in the pathogen-host interaction gene database (PHI-base). (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8795582.v1
title: Additional file 7: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Pathogenicity proteins of P. citricarpa. List of P. citricarpa exclusive proteins displaying similarity with subjects in the pathogen-host interaction gene database (PHI-base). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8795570
title: Additional file 5: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Unique sequences of proteins of P. citricarpa. Unique proteins identified after comparison of the P. citricarpa and P. capitalensis sequences by Blastp. (FA 654 kb)
DOI: 10.6084/m9.figshare.8795576
title: Additional file 6: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Unique proteins of genes of P. capitalensis. Unique proteins identified after comparison of the P. capitalensis and P. citricarpa sequences by Blastp. (FA 992 kb)
DOI: 10.6084/m9.figshare.8795576.v1
title: Additional file 6: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Unique proteins of genes of P. capitalensis. Unique proteins identified after comparison of the P. capitalensis and P. citricarpa sequences by Blastp. (FA 992 kb)
DOI: 10.6084/m9.figshare.8795561
title: Additional file 4: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Comparative analysis of gene gain and loss rates. Comparative analysis of gene gain and loss rates is represented in relation to different branches from the pathogenic and endophytic Phyllosticta species. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8795570.v1
title: Additional file 5: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Unique sequences of proteins of P. citricarpa. Unique proteins identified after comparison of the P. citricarpa and P. capitalensis sequences by Blastp. (FA 654 kb)
DOI: 10.6084/m9.figshare.8795561.v1
title: Additional file 4: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Comparative analysis of gene gain and loss rates. Comparative analysis of gene gain and loss rates is represented in relation to different branches from the pathogenic and endophytic Phyllosticta species. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8795546
title: Additional file 2: of Biodistribution and radiation dosimetry of the novel hypoxia PET probe [18F]DiFA and comparison with [18F]FMISO

description: The results of laboratory tests. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.8795543
title: Additional file 2: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Sequences of P. capitalensis transcripts. The proteins obtained after de novo assembly of P. capitalensis were used for proteins prediction using Botrytis cinerea as reference in Augustus, when 14,797coding sequences were obtained. (TXT 5895 kb)
DOI: 10.6084/m9.figshare.8795540
title: Additional file 1: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Sequences of P. citricarpa proteins. The proteins obtained after de novo assembly of P. citricarpa genome were used for coding sequences prediction using Botrytis cinerea as reference in Augustus, when 15,206 proteins were obtained. (TXT 5151 kb)
DOI: 10.6084/m9.figshare.8795543.v1
title: Additional file 2: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Sequences of P. capitalensis transcripts. The proteins obtained after de novo assembly of P. capitalensis were used for proteins prediction using Botrytis cinerea as reference in Augustus, when 14,797coding sequences were obtained. (TXT 5895 kb)
DOI: 10.6084/m9.figshare.8795546.v1
title: Additional file 2: of Biodistribution and radiation dosimetry of the novel hypoxia PET probe [18F]DiFA and comparison with [18F]FMISO

description: The results of laboratory tests. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.8795540.v1
title: Additional file 1: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Sequences of P. citricarpa proteins. The proteins obtained after de novo assembly of P. citricarpa genome were used for coding sequences prediction using Botrytis cinerea as reference in Augustus, when 15,206 proteins were obtained. (TXT 5151 kb)
DOI: 10.6084/m9.figshare.8795528
title: Additional file 10: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Secreted CAZymes by P. citricarpa and P. capitalensis. List of secreted CAZymes identified among the exclusive proteins of each species. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8795528.v1
title: Additional file 10: of Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

description: Secreted CAZymes by P. citricarpa and P. capitalensis. List of secreted CAZymes identified among the exclusive proteins of each species. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8795495
title: Additional file 1: of Nutritional service needs of pregnant and lactating adolescent girls in Trans-Mara East Sub-County, Narok County: focus on access and utilization of nutritional advice and services

description: These are the dataset supporting the conclusions of this article which is provided as Additional file 1. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.8795495.v1
title: Additional file 1: of Nutritional service needs of pregnant and lactating adolescent girls in Trans-Mara East Sub-County, Narok County: focus on access and utilization of nutritional advice and services

description: These are the dataset supporting the conclusions of this article which is provided as Additional file 1. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.8795477
title: Additional file 1: of Importance of prostate androgen-regulated mucin-like protein 1 in development of the bovine blastocyst

description: Effects of GapmeR treatment on expression of 90 genes at the compact morula (Table S1) and blastocyst (Table S2) stages. Data are least-squares means + SEM of fold-change expression relative to the geometric means of five housekeeping (ACTB, GADPH, HPRT1, H2AF2, and SDHA). Highlighted genes represent those where there was a significant effect of treatment. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8795477.v1
title: Additional file 1: of Importance of prostate androgen-regulated mucin-like protein 1 in development of the bovine blastocyst

description: Effects of GapmeR treatment on expression of 90 genes at the compact morula (Table S1) and blastocyst (Table S2) stages. Data are least-squares means + SEM of fold-change expression relative to the geometric means of five housekeeping (ACTB, GADPH, HPRT1, H2AF2, and SDHA). Highlighted genes represent those where there was a significant effect of treatment. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8795141
title: Thermal niche variation among individuals of the poison frog, Oophaga pumilio, in forest and converted habitats

description: Data archive from: Rivera-Ordonez et al. 2019. Thermal niche variation among individuals of the poison frog, Oophaga pumilio, in forest and converted habitats. Biotropica.
DOI: 10.6084/m9.figshare.8795144
title: Nanopore Transposon Insertion Identification

description: Supplementary Information for a manuscript investigating the ability of using nanopore sequencing for identifying the sites of transposon insertions in bacterial genomes. <br>Includes raw .ab1 files for sequencing to verify some transposon insertions and documents describing these insertions, a document describing the creation of all strains sequenced within the manuscript, a gel picture of genomic DNA prior to sequencing using a Rapid Kit as well as genomic DNA prior to sequencing using the LSK109 kit, a fasta file containing query sequences for identifying transposon insertions in genomes, a file showing coverage intervals for reads mapped back to the DBL494 genome after CRISPR-Cas enrichment and sequencing, a perl program used to pull a subset of reads of interest from a fasta file with input from blast outfmt-6,
DOI: 10.6084/m9.figshare.8795141.v1
title: Thermal niche variation among individuals of the poison frog, Oophaga pumilio, in forest and converted habitats

description: Data archive from: Rivera-Ordonez et al. 2019. Thermal niche variation among individuals of the poison frog, Oophaga pumilio, in forest and converted habitats. Biotropica.
DOI: 10.6084/m9.figshare.8795087
title: GWAS alleles

description: African soybean-SNF GWAS alleles
DOI: 10.6084/m9.figshare.8795084
title: Phenotypic data

description: African soybean phenotypic data for SNF
DOI: 10.6084/m9.figshare.8795144.v1
title: Nanopore Transposon Insertion Identification

description: Supplementary Information for a manuscript investigating the ability of using nanopore sequencing for identifying the sites of transposon insertions in bacterial genomes. <br>Includes raw .ab1 files for sequencing to verify some transposon insertions and documents describing these insertions, a document describing the creation of all strains sequenced within the manuscript, a gel picture of genomic DNA prior to sequencing using a Rapid Kit as well as genomic DNA prior to sequencing using the LSK109 kit, a fasta file containing query sequences for identifying transposon insertions in genomes, a file showing coverage intervals for reads mapped back to the DBL494 genome after CRISPR-Cas enrichment and sequencing, a perl program used to pull a subset of reads of interest from a fasta file with input from blast outfmt-6,
DOI: 10.6084/m9.figshare.8795027
title: CCDB_7755.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in Nf1 heterozygote (Nf1 -/+) knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8795081
title: Genotypic data

description: African soybean SNP dataset
DOI: 10.6084/m9.figshare.8795027.v1
title: CCDB_7755.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in Nf1 heterozygote (Nf1 -/+) knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8795081.v1
title: Genotypic data

description: African soybean SNP dataset
DOI: 10.6084/m9.figshare.8795021
title: CCDB_7750.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in an astrocyte specific Nf1 heterozygote (Nf1 -/+) conditional knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8795012
title: FASTR Dataset

description: This is the dataset used in the analysis of the FASTR.
DOI: 10.6084/m9.figshare.8795021.v1
title: CCDB_7750.jpg

description: Mosaic reconstruction imaged using spinning disk confocal microscopy of a flat mount of retina showing retinal ganglion cells retrogradely labeled via fluorogold injection into the superior colliculus in an astrocyte specific Nf1 heterozygote (Nf1 -/+) conditional knock out mouse. Details may be found in Kim et al., Neuroscience. 2010 Sep 29;170(1):178-88.
DOI: 10.6084/m9.figshare.8795012.v1
title: FASTR Dataset

description: This is the dataset used in the analysis of the FASTR.
DOI: 10.6084/m9.figshare.8794931
title: EMP 16S rRNA V4 515F/806R Parada Appil

description: This is an archive of the EMP 515F-806R 16S rRNA barcoded primers.
DOI: 10.25392/leicester.data.8794898
title: Resilience in Changing Environments. The Resilient Systems Coping Scale.

description: Dataset relating to manuscript: Resilience in Changing Environments: The Resilient Systems Coping Scale. <br><br>4 samples of either USA and UK participants. Demographic data include Sex/Gender, Age, Ethnicity, Work, and Educational Status. Psychological variables assessed include a measure of resilient coping, trait resilience, personality, coping, self-efficacy, emotional intelligence, perceived stress, and well-being.<br>Sample 1. Measure of resilient copingSample 2. Measures of resilient coping, personality, coping, trait resilience.Sample 3. Measures of resilient coping, self-efficacy, emotional intelligence, well-being, and perceived stress.Sample 4. Measures of resilient coping, personality, coping, trait resilience, and depresion and anxiety. <br>
DOI: 10.6084/m9.figshare.8792279
title: remit_2016.dta

description: WDI IMF Data
DOI: 10.6084/m9.figshare.8792279.v1
title: remit_2016.dta

description: WDI IMF Data
DOI: 10.6084/m9.figshare.8792267
title: Vermi_eiseniae_msu (Reference based Assembly).fa

description: Reference based genome sequence of Verminephrobacter_eiseniae_msu
DOI: 10.6084/m9.figshare.8792267.v1
title: Vermi_eiseniae_msu (Reference based Assembly).fa

description: Reference based genome sequence of Verminephrobacter_eiseniae_msu
DOI: 10.15131/shef.data.8791985
title: A Partial Oracle for Uniformity Statistics Data

description: Data for the paper entitled "A Partial Oracle for Uniformity Statistics".
DOI: 10.15131/shef.data.8791985.v1
title: A Partial Oracle for Uniformity Statistics Data

description: Data for the paper entitled "A Partial Oracle for Uniformity Statistics".
DOI: 10.6084/m9.figshare.8791901
title: FW_SRL_S15

description: Fine-wire intramuscular EMG Subject 13 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.8791883
title: FW_LRL_S16

description: Fine-wire intramuscular EMG Subject 14 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791901.v1
title: FW_SRL_S15

description: Fine-wire intramuscular EMG Subject 13 Protocol: Short Residual Limb
DOI: 10.6084/m9.figshare.8791859
title: FW_LRL_S11

description: Fine-wire intramuscular EMG Subject 9 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791862
title: FW_LRL_S8

description: Fine-wire intramuscular EMG Subject 6 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791883.v1
title: FW_LRL_S16

description: Fine-wire intramuscular EMG Subject 14 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791859.v1
title: FW_LRL_S11

description: Fine-wire intramuscular EMG Subject 9 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791862.v1
title: FW_LRL_S8

description: Fine-wire intramuscular EMG Subject 6 Protocol: Long Residual Limb
DOI: 10.6084/m9.figshare.8791841
title: Supporting data tables from Of eyes and embryos: subfunctionalization of the <i>CRX</i> homeobox gene in mammalian evolution

description: (A) FastML output for deducing ancestral vertebrate CRX sequence. (B) RNA expression (TPM) of CRX, OTX1/2, and ETCHbox across fat-tailed dunnart and mouse early embryogenesis. (C) Lists of genes differentially expressed following metatherian and eutherian CRX ectopic expression in MEFs. (D) GO terms significantly enriched in the set of genes differentially expressed following human CRX ectopic expression. (E) GO terms significantly enriched in the set of genes differentially expressed following opossum CRX ectopic expression. (F) List of mouse genes dynamically expressed (FPKM variance &gt;5) across mouse preimplantation development. (G) Genes differentially expressed following metatherian CRX ectopic expression with known roles in early eutherian development.
DOI: 10.6084/m9.figshare.8791844
title: Supplementary tables from Evaluating responses to temperature during pre-metamorphosis and carry-over effects at post-metamorphosis in the wood tiger moth (<i>Arctia plantaginis</i>)

description: Details of statistical analyses
DOI: 10.6084/m9.figshare.8791844.v1
title: Supplementary tables from Evaluating responses to temperature during pre-metamorphosis and carry-over effects at post-metamorphosis in the wood tiger moth (<i>Arctia plantaginis</i>)

description: Details of statistical analyses
DOI: 10.6084/m9.figshare.8791841.v1
title: Supporting data tables from Of eyes and embryos: subfunctionalization of the <i>CRX</i> homeobox gene in mammalian evolution

description: (A) FastML output for deducing ancestral vertebrate CRX sequence. (B) RNA expression (TPM) of CRX, OTX1/2, and ETCHbox across fat-tailed dunnart and mouse early embryogenesis. (C) Lists of genes differentially expressed following metatherian and eutherian CRX ectopic expression in MEFs. (D) GO terms significantly enriched in the set of genes differentially expressed following human CRX ectopic expression. (E) GO terms significantly enriched in the set of genes differentially expressed following opossum CRX ectopic expression. (F) List of mouse genes dynamically expressed (FPKM variance &gt;5) across mouse preimplantation development. (G) Genes differentially expressed following metatherian CRX ectopic expression with known roles in early eutherian development.
DOI: 10.6084/m9.figshare.8791787
title: language task, verbal fluency, N=1

description: A movement-corrected and normalized fMRI-timeseries from a healthy control participant performing a semantic verbal fluency task.<br>