cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24435/materialscloud:c8-gy
title: Machine learning-accelerated discovery of A₂BC₂ ternary electrides with diverse anionic electron densities

description: This study combines machine learning (ML) and high-throughput calculations to uncover new ternary electrides in the A₂BC₂ family of compounds with the P4/mbm space group. Starting from a library of 214 known A₂BC₂ phases, density-functional theory calculations were used to compute the maximum value of the electron localization function, indicating that 42 are potential electrides. A model was then trained on this dataset and used to predict the electride behaviour of 14,437 hypothetical compounds generated by structural prototyping. Then, the stability and electride features of the 1254 electride candidates predicted by the model were carefully checked by high-throughput calculations.
DOI: 10.24435/materialscloud:4p-f2
title: Emergence of threefold symmetric helical photocurrents in epitaxial low twinned Bi₂Se₃

description: We present evidence of a strong circular photon drag effect (PDE) in topological insulators (TIs) through the observation of threefold rotationally symmetric helicity-dependent topological photocurrents using THz spectroscopy in epitaxially-grown Bi₂Se₃ with reduced crystallographic twinning. We establish how twinned domains introduce competing nonlinear optical (NLO) responses inherent to the crystal structure that obscure geometry-sensitive optical processes through the introduction of a spurious mirror symmetry. Minimizing the twinning defect reveals strong NLO response currents whose magnitude and direction depend on the alignment of the excitation to the crystal axes and follow the threefold rotational symmetry of the crystal. Notably, photocurrents arising from helical light reverse direction for left/right circular polarizations and maintain a strong azimuthal dependence—a result uniquely attributable to the circular PDE, where the photon momentum acts as an applied in-plane field stationary in the laboratory frame. Our results demonstrate new levels of control over the magnitude and direction of photocurrents in TIs and that the study of single-domain films is crucial to reveal hidden phenomena that couple topological order and crystal symmetries.
DOI: 10.24435/materialscloud:zt-z4
title: Machine learning-accelerated discovery of A₂BC₂ ternary electrides with diverse anionic electron densities

description: This study combines machine learning (ML) and high-throughput calculations to uncover new ternary electrides in the A₂BC₂ family of compounds with the P4/mbm space group. Starting from a library of 214 known A₂BC₂ phases, density-functional theory calculations were used to compute the maximum value of the electron localization function, indicating that 42 are potential electrides. A model was then trained on this dataset and used to predict the electride behaviour of 14,437 hypothetical compounds generated by structural prototyping. Then, the stability and electride features of the 1254 electride candidates predicted by the model were carefully checked by high-throughput calculations.
DOI: 10.24435/materialscloud:dt-nx
title: Emergence of threefold symmetric helical photocurrents in epitaxial low twinned Bi₂Se₃

description: We present evidence of a strong circular photon drag effect (PDE) in topological insulators (TIs) through the observation of threefold rotationally symmetric helicity-dependent topological photocurrents using THz spectroscopy in epitaxially-grown Bi₂Se₃ with reduced crystallographic twinning. We establish how twinned domains introduce competing nonlinear optical (NLO) responses inherent to the crystal structure that obscure geometry-sensitive optical processes through the introduction of a spurious mirror symmetry. Minimizing the twinning defect reveals strong NLO response currents whose magnitude and direction depend on the alignment of the excitation to the crystal axes and follow the threefold rotational symmetry of the crystal. Notably, photocurrents arising from helical light reverse direction for left/right circular polarizations and maintain a strong azimuthal dependence—a result uniquely attributable to the circular PDE, where the photon momentum acts as an applied in-plane field stationary in the laboratory frame. Our results demonstrate new levels of control over the magnitude and direction of photocurrents in TIs and that the study of single-domain films is crucial to reveal hidden phenomena that couple topological order and crystal symmetries.
DOI: 10.24435/materialscloud:ks-0h
title: Doping-Induced Electronic and Structural Phase Transition in the Bulk Weyl semimetal Mo1-xWxTe2

description: A comprehensive study of the electronic and structural phase transition from 1T` to Td in the bulk Weyl semimetal Mo1-xWxTe2 at different doping concentrations has been carried out using time-of-flight momentum microscopy (including circular and linear dichroism), X-ray photoelectron spectroscopy, X-ray photoelectron diffraction, X-ray diffraction (XRD), angle-resolved Raman spectroscopy, transport measurements (including longitudinal elastoresistance), density functional theory (DFT) and Kikuchi pattern calculations. High-resolution, angle-resolved photoemission spectroscopy at 20 K reveals surface electronic states, which are indicative for topological Fermi arcs. Their dispersion agrees with the position of Weyl points predicted by DFT calculations based on the precise crystal structure of our samples obtained from XRD measurements. Raman spectroscopy confirms the inversion symmetry breaking for the Td-phase, which is a necessary condition for the emergence of topological states. Transport measurements show that increasing the doping concentration from 2 to 9 % leads to an increase in the temperature of the phase transition from 1T` to Td from 230 K to 270 K. Magnetoresistance and longitudinal elastoresistance show significantly increased values in the Td-phase.
This dataset contains the raw data discussed in the manuscript with the same title.
DOI: 10.24435/materialscloud:g0-qa
title: Doping-Induced Electronic and Structural Phase Transition in the Bulk Weyl semimetal Mo1-xWxTe2

description: A comprehensive study of the electronic and structural phase transition from 1T` to Td in the bulk Weyl semimetal Mo1-xWxTe2 at different doping concentrations has been carried out using time-of-flight momentum microscopy (including circular and linear dichroism), X-ray photoelectron spectroscopy, X-ray photoelectron diffraction, X-ray diffraction (XRD), angle-resolved Raman spectroscopy, transport measurements (including longitudinal elastoresistance), density functional theory (DFT) and Kikuchi pattern calculations. High-resolution, angle-resolved photoemission spectroscopy at 20 K reveals surface electronic states, which are indicative for topological Fermi arcs. Their dispersion agrees with the position of Weyl points predicted by DFT calculations based on the precise crystal structure of our samples obtained from XRD measurements. Raman spectroscopy confirms the inversion symmetry breaking for the Td-phase, which is a necessary condition for the emergence of topological states. Transport measurements show that increasing the doping concentration from 2 to 9 % leads to an increase in the temperature of the phase transition from 1T` to Td from 230 K to 270 K. Magnetoresistance and longitudinal elastoresistance show significantly increased values in the Td-phase.
This dataset contains the raw data discussed in the manuscript with the same title.
DOI: 10.24435/materialscloud:36-nd
title: The Materials Cloud 2D database (MC2D)

description: Two-dimensional (2D) materials are among the most promising candidates for beyond silicon electronic and optoelectronic applications. Recently, their recognized importance, sparked a race to discover and characterize new 2D materials. Within few years the number of experimentally exfoliated or synthesized 2D materials went from a couple of dozens to few hundreds while the number theoretically predicted compounds reached a few thousands. In 2018 we first contributed to this effort with the identification of 1825 compounds that are either easily (1036) or potentially (789) exfoliable from experimentally known 3D compounds. In the present work we report on the new materials recently added to the 2D-portfolio thanks to the extension of the screening to an additional experimental database (MPDS) as well as the most up-to-date versions of the two databases (ICSD and COD) used in our previous work. This expansion led to the discovery of an additional 1252 unique monolayers bringing the total to 3077 compounds and, notably, almost doubling the number of easily exfoliable materials (2004). Moreover, we optimized the structural properties of all the materials (regardless of their binding energy or number of atoms in the unit cell) as isolated mono-layer and explored their electronic band structure. This archive entry contains the database of 2D materials in particular it contains the structural parameters for all the 3077 structures of the global Material Cloud 2D database as extracted from their bulk 3D parent, 2710 optimized 2D structures and 2345 electronic band structure together with the provenance of all data and calculations as stored by AiiDA.
DOI: 10.24435/materialscloud:4b-5v
title: The Materials Cloud 2D database (MC2D)

description: Two-dimensional (2D) materials are among the most promising candidates for beyond silicon electronic and optoelectronic applications. Recently, their recognized importance, sparked a race to discover and characterize new 2D materials. Within few years the number of experimentally exfoliated or synthesized 2D materials went from a couple of dozens to few hundreds while the number theoretically predicted compounds reached a few thousands. In 2018 we first contributed to this effort with the identification of 1825 compounds that are either easily (1036) or potentially (789) exfoliable from experimentally known 3D compounds. In the present work we report on the new materials recently added to the 2D-portfolio thanks to the extension of the screening to an additional experimental database (MPDS) as well as the most up-to-date versions of the two databases (ICSD and COD) used in our previous work. This expansion led to the discovery of an additional 1252 unique monolayers bringing the total to 3077 compounds and, notably, almost doubling the number of easily exfoliable materials (2004). Moreover, we optimized the structural properties of all the materials (regardless of their binding energy or number of atoms in the unit cell) as isolated mono-layer and explored their electronic band structure. This archive entry contains the database of 2D materials in particular it contains the structural parameters for all the 3077 structures of the global Material Cloud 2D database as extracted from their bulk 3D parent, 2710 optimized 2D structures and 2345 electronic band structure together with the provenance of all data and calculations as stored by AiiDA.
DOI: 10.24435/materialscloud:c0-7z
title: Reaction-agnostic featurization of bidentate ligands for Bayesian ridge regression of enantioselectivity

description: Chiral ligands are important components in asymmetric homogeneous catalysis, but their synthesis and screening can be both time-consuming and resource-intensive. Data-driven approaches, in contrast to screening procedures based on intuition, have the potential to reduce the time and resources needed for reaction optimization by more rapidly identifying an ideal catalyst. These approaches, however, are often non-transferable and cannot be applied across different reactions. To overcome this drawback, we introduce a general featurization strategy for bidentate ligands that is coupled with an automated feature selection pipeline and Bayesian ridge regression to perform multivariate linear regression modeling. This approach, which is applicable to any reaction, incorporates electronic, steric, and topological features (rigidity/flexibility, branching, geometry, constitution) and is well-suited for early-stage ligand optimization. Using only small datasets, our workflow capably predicts the enantioselectivity of four metal-catalyzed asymmetric reactions. Uncertainty estimates provided by Bayesian ridge regression permit the use of Bayesian optimization to efficiently explore pools of prospective new ligands. Finally, we constructed the BDL-Cu-2023 dataset, comprised of 312 bidentate ligands extracted from the CSD, and screened it with this procedure to identify promising ligand candidates for a challenging asymmetric oxy-alkynylation reaction.
DOI: 10.24435/materialscloud:ds-8j
title: A transferable force field for gallium nitride crystal growth from the melt using on-the-fly active learning

description: Atomic-scale simulations of reactive processes have been stymied by two factors: the general lack of a suitable semi-empirical force field on the one hand, and the impractically large computational burden of using ab initio molecular dynamics on the other. In this paper, we use an "on-the-fly" active learning technique to develop a non-parameterized force field that, in essence, exhibits the accuracy of density functional theory and the speed of a classical molecular dynamics simulation. We developed a force field suitable to capture the crystallization of gallium nitride (GaN) using a novel additive manufacturing route and a combination of liquid Ga and ammonia gas precursors to grow GaN thin films. We show that this machine learning model is capable of producing a transferable force field that can model all three phases, solid, liquid and gas, involved in this additive manufacturing process. We verified our computational results against a range of experimental measurements and ab initio molecular dynamics simulation, showing that this non-parametric force field shows excellent accuracy as well as a computationally tractable efficiency. The development of this transferable force field opens the opportunity to simulate liquid phase epitaxial growth more accurately than before, analyze reaction and diffusion processes, and ultimately establish a growth model of the additive manufacturing process to create gallium nitride thin films.
In this archive, we included the mapped Gaussian Process force field parameters of gallium and gallium nitride for LAMMPS simulations. Users can download these force field parameters to test and recreate similar Molecular Dynamic simulation discussed in the paper.
DOI: 10.24435/materialscloud:hb-55
title: Reaction-agnostic featurization of bidentate ligands for Bayesian ridge regression of enantioselectivity

description: Chiral ligands are important components in asymmetric homogeneous catalysis, but their synthesis and screening can be both time-consuming and resource-intensive. Data-driven approaches, in contrast to screening procedures based on intuition, have the potential to reduce the time and resources needed for reaction optimization by more rapidly identifying an ideal catalyst. These approaches, however, are often non-transferable and cannot be applied across different reactions. To overcome this drawback, we introduce a general featurization strategy for bidentate ligands that is coupled with an automated feature selection pipeline and Bayesian ridge regression to perform multivariate linear regression modeling. This approach, which is applicable to any reaction, incorporates electronic, steric, and topological features (rigidity/flexibility, branching, geometry, constitution) and is well-suited for early-stage ligand optimization. Using only small datasets, our workflow capably predicts the enantioselectivity of four metal-catalyzed asymmetric reactions. Uncertainty estimates provided by Bayesian ridge regression permit the use of Bayesian optimization to efficiently explore pools of prospective new ligands. Finally, we constructed the BDL-Cu-2023 dataset, comprised of 312 bidentate ligands extracted from the CSD, and screened it with this procedure to identify promising ligand candidates for a challenging asymmetric oxy-alkynylation reaction.
DOI: 10.24435/materialscloud:z7-ev
title: A genetic optimization strategy with generality in asymmetric organocatalysis as primary target

description: A catalyst possessing a broad substrate scope, in terms of both turnover and enantioselectivity, is sometimes called "general". Despite their great utility in asymmetric synthesis, truly general catalysts are difficult or expensive to discover via traditional high-throughput screening and are, therefore, rare. Existing computational tools accelerate the evaluation of reaction conditions from a pre-defined set of experiments to identify the most general ones, but cannot generate entirely new catalysts with enhanced substrate breadth. For these reasons, we report an inverse design strategy based on the open-source genetic algorithm NaviCatGA and on the OSCAR database of organocatalysts to simultaneously probe the catalyst and substrate scope and optimize generality as primary target. We apply this strategy to the Pictet–Spengler condensation, for which we curate a database of 820 reactions, used to train statistical models of selectivity and activity. Starting from OSCAR, we define a combinatorial space of millions of catalyst possibilities, and perform evolutionary experiments on a diverse substrate scope that is representative of the whole chemical space of tetrahydro-β-carboline products. While privileged catalysts emerge, we show how genetic optimization can address the broader question of generality in asymmetric synthesis, extracting structure–performance relationships from the challenging areas of chemical space.
DOI: 10.24435/materialscloud:h6-fj
title: Computational Design of Transition Metal Catalysts for Hydrodefluorination of Trifluoromethylarenes using Hydrosilane

description: The C-F activation is one of the important processes in chemical synthesis. Here, we studied the hydrodefluorination of PhCF3 with SiMe2Ph-H catalyzed by Ni(0) complexes. The mechanisms involve three main steps: C-F bond cleavage of PhCF3 on the nickel complex, transmetalation of Ni-F with SiMe2Ph-H to form a nickel hydride complex, and C-H reductive elimination of PhCF2H. We performed density functional calculations on nickel complexes with thirty carbene and phosphine ligands to obtain the relative free energy profiles. Then, linear free energy scaling relationships were determined and molecular volcano plots were constructed. To accurately describe catalytic activity, we found that multiple reference states must be considered.  Thus, the concept of "reference-generalized volcano plots (RGVPs)" was introduced to assist with the selection of the appropriate reference state to determine catalytic activity. Our regression models indicate that electronic properties of ligands significantly influence energy descriptors more than steric size, although steric hindrance affects reference state stability. Optimal ligands are highly electron-donating with small-to-moderate steric sizes. This study highlights the importance of selecting appropriate ligands and metal centers to optimize catalytic activity. Examples of input files for density functional calculations in Gaussian16 to obtain relative free energies for all intermediates and transition states, the spreadsheet tables including the calculated relative free energies for generating LFESRs and volcano plots, and all optimized Cartesian coordinates are provided.
DOI: 10.24435/materialscloud:6y-9k
title: Computational Design of Transition Metal Catalysts for Hydrodefluorination of Trifluoromethylarenes using Hydrosilane

description: The C-F activation is one of the important processes in chemical synthesis. Here, we studied the hydrodefluorination of PhCF3 with SiMe2Ph-H catalyzed by Ni(0) complexes. The mechanisms involve three main steps: C-F bond cleavage of PhCF3 on the nickel complex, transmetalation of Ni-F with SiMe2Ph-H to form a nickel hydride complex, and C-H reductive elimination of PhCF2H. We performed density functional calculations on nickel complexes with thirty carbene and phosphine ligands to obtain the relative free energy profiles. Then, linear free energy scaling relationships were determined and molecular volcano plots were constructed. To accurately describe catalytic activity, we found that multiple reference states must be considered.  Thus, the concept of "reference-generalized volcano plots (RGVPs)" was introduced to assist with the selection of the appropriate reference state to determine catalytic activity. Our regression models indicate that electronic properties of ligands significantly influence energy descriptors more than steric size, although steric hindrance affects reference state stability. Optimal ligands are highly electron-donating with small-to-moderate steric sizes. This study highlights the importance of selecting appropriate ligands and metal centers to optimize catalytic activity. Examples of input files for density functional calculations in Gaussian16 to obtain relative free energies for all intermediates and transition states, the spreadsheet tables including the calculated relative free energies for generating LFESRs and volcano plots, and all optimized Cartesian coordinates are provided.
DOI: 10.24435/materialscloud:p4-gz
title: A genetic optimization strategy with generality in asymmetric organocatalysis as primary target

description: A catalyst possessing a broad substrate scope, in terms of both turnover and enantioselectivity, is sometimes called "general". Despite their great utility in asymmetric synthesis, truly general catalysts are difficult or expensive to discover via traditional high-throughput screening and are, therefore, rare. Existing computational tools accelerate the evaluation of reaction conditions from a pre-defined set of experiments to identify the most general ones, but cannot generate entirely new catalysts with enhanced substrate breadth. For these reasons, we report an inverse design strategy based on the open-source genetic algorithm NaviCatGA and on the OSCAR database of organocatalysts to simultaneously probe the catalyst and substrate scope and optimize generality as primary target. We apply this strategy to the Pictet–Spengler condensation, for which we curate a database of 820 reactions, used to train statistical models of selectivity and activity. Starting from OSCAR, we define a combinatorial space of millions of catalyst possibilities, and perform evolutionary experiments on a diverse substrate scope that is representative of the whole chemical space of tetrahydro-β-carboline products. While privileged catalysts emerge, we show how genetic optimization can address the broader question of generality in asymmetric synthesis, extracting structure–performance relationships from the challenging areas of chemical space.