cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7206659.v1
title: Raw fish length data. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Fish that were unable to be measured have been removed from the dataset. Each row represents an individual fish record. ‘Site’, ‘Depth’, and ‘Transect’ represent the survey site, depth (m) and transect number at the site. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca. ‘Family’, ‘Genus’, and ‘Species’ contain the fish family, genus and species. ‘Length.mm’ contains the measured fish length (mm), while ‘Range.mm’ contains the distance from the cameras (mm) that the fish was located when measured.
DOI: 10.6084/m9.figshare.7206656
title: ESM 6 Benthic key.csv from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Widespread shallow coral reef loss has led to calls for more holistic approaches to coral reef management, requiring inclusion of ecosystems interacting with shallow coral reefs in management plans. Yet, almost all current reef management is biased towards shallow reefs, and overlooks that coral reefs extend beyond shallow waters to mesophotic coral ecosystems (MCEs; 30–150 m). We present the first detailed quantitative characterization of MCEs off Cozumel, Mexico, on the northern Mesoamerican Reef in the Mexican Caribbean, and provide insights into their general state. We documented MCE biodiversity, and assessed whether MCEs adjacent to a major town and port, where coastal development has caused shallow reef damage, have similar benthic and fish communities to MCEs within a National Park. Our results show that overall MCE communities are similar regardless of protection, though some taxa-specific differences exist in benthic communities between sites within the MPA and areas outside. Regardless of protection and location, and in contrast to shallow reefs, all observed Cozumel MCEs were continuous reefs with the main structural habitat complexity provided by calcareous macroalgae, sponges, gorgonians and black corals. Hard corals were present on MCEs, although at low abundance. We found that 42.5% of fish species recorded on Cozumel could be found on both shallow reefs and MCEs, including 39.6% of commercially valuable fish species. These results suggest that MCEs could play an important role in supporting fish populations. However, regardless of protection and depth, we found few large-body fishes (greater than 500 mm), which were nearly absent at all studied sites. Cozumel MCEs contain diverse benthic and fish assemblages, including commercially valuable fisheries species and ecosystem engineers, such as black corals. Because of their inherent biodiversity and identified threats, MCEs may be incorporated into shallow-reef-focused Cozumel National Park management plan.
DOI: 10.6084/m9.figshare.7206662.v1
title: Raw benthic data. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: ‘Cover’ indicates specific benthic cover, while ‘Category’ indicates broad benthic category. ‘Cover’ and ‘Category’ codes are defined in ESM 6. ‘Site’, ‘Transect’, ‘Depth’, and ‘Quad’ indicates survey site, transect number at that site, depth (m) and quadrat number respectively. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca.
DOI: 10.7284/126443
title: Multibeam Echosounder data collected during research cruise SR1708 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7206650
title: Fish length weight conversion and commercial value categories. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: ‘family’, ‘genus’, and ‘species’ indicate the fish family, genus and species respectively. ‘a’ and ‘b’ represent the a and b values used to convert fish length to weight and were sourced from fishbase. ‘trophic_level’, ‘vulnerability’ and ‘price’ indicate the fish trophic level, vulnerability and price metrics sourced from fishbase. Price was recorded as: VH – very high, H – high, M – medium, MO – moderate, L-MO – low to moderate, L – low, and NA – not available.
DOI: 10.6084/m9.figshare.7206653
title: Raw fish abundance and biomass data. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Fish that were unable to be measured have been allocated the mean length as outlined in the methods. Each row represents an individual fish record. ‘name’ indicates fish family, genus and species in the format FAMILY_GENUS_SPECIES. ‘weight.g’ gives the estimated fish weight in g. ‘length.cm’ gives the measured fish length in cm. ‘family’, ‘genus’, ‘species’, ‘depth’, ‘transect’, and ‘site’ give the fish family, genus, species, survey depth (m), transect number at the site, and site respectively. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca. ‘range.mm’ indicates the distance from the stereo-DOV in mm that the fish was measured at.
DOI: 10.6084/m9.figshare.7206656.v1
title: ESM 6 Benthic key.csv from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Widespread shallow coral reef loss has led to calls for more holistic approaches to coral reef management, requiring inclusion of ecosystems interacting with shallow coral reefs in management plans. Yet, almost all current reef management is biased towards shallow reefs, and overlooks that coral reefs extend beyond shallow waters to mesophotic coral ecosystems (MCEs; 30–150 m). We present the first detailed quantitative characterization of MCEs off Cozumel, Mexico, on the northern Mesoamerican Reef in the Mexican Caribbean, and provide insights into their general state. We documented MCE biodiversity, and assessed whether MCEs adjacent to a major town and port, where coastal development has caused shallow reef damage, have similar benthic and fish communities to MCEs within a National Park. Our results show that overall MCE communities are similar regardless of protection, though some taxa-specific differences exist in benthic communities between sites within the MPA and areas outside. Regardless of protection and location, and in contrast to shallow reefs, all observed Cozumel MCEs were continuous reefs with the main structural habitat complexity provided by calcareous macroalgae, sponges, gorgonians and black corals. Hard corals were present on MCEs, although at low abundance. We found that 42.5% of fish species recorded on Cozumel could be found on both shallow reefs and MCEs, including 39.6% of commercially valuable fish species. These results suggest that MCEs could play an important role in supporting fish populations. However, regardless of protection and depth, we found few large-body fishes (greater than 500 mm), which were nearly absent at all studied sites. Cozumel MCEs contain diverse benthic and fish assemblages, including commercially valuable fisheries species and ecosystem engineers, such as black corals. Because of their inherent biodiversity and identified threats, MCEs may be incorporated into shallow-reef-focused Cozumel National Park management plan.
DOI: 10.6084/m9.figshare.7206650.v1
title: Fish length weight conversion and commercial value categories. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: ‘family’, ‘genus’, and ‘species’ indicate the fish family, genus and species respectively. ‘a’ and ‘b’ represent the a and b values used to convert fish length to weight and were sourced from fishbase. ‘trophic_level’, ‘vulnerability’ and ‘price’ indicate the fish trophic level, vulnerability and price metrics sourced from fishbase. Price was recorded as: VH – very high, H – high, M – medium, MO – moderate, L-MO – low to moderate, L – low, and NA – not available.
DOI: 10.6084/m9.figshare.7206653.v1
title: Raw fish abundance and biomass data. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Fish that were unable to be measured have been allocated the mean length as outlined in the methods. Each row represents an individual fish record. ‘name’ indicates fish family, genus and species in the format FAMILY_GENUS_SPECIES. ‘weight.g’ gives the estimated fish weight in g. ‘length.cm’ gives the measured fish length in cm. ‘family’, ‘genus’, ‘species’, ‘depth’, ‘transect’, and ‘site’ give the fish family, genus, species, survey depth (m), transect number at the site, and site respectively. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca. ‘range.mm’ indicates the distance from the stereo-DOV in mm that the fish was measured at.
DOI: 10.6084/m9.figshare.7206644
title: ESM 7 R Code.txt from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Widespread shallow coral reef loss has led to calls for more holistic approaches to coral reef management, requiring inclusion of ecosystems interacting with shallow coral reefs in management plans. Yet, almost all current reef management is biased towards shallow reefs, and overlooks that coral reefs extend beyond shallow waters to mesophotic coral ecosystems (MCEs; 30–150 m). We present the first detailed quantitative characterization of MCEs off Cozumel, Mexico, on the northern Mesoamerican Reef in the Mexican Caribbean, and provide insights into their general state. We documented MCE biodiversity, and assessed whether MCEs adjacent to a major town and port, where coastal development has caused shallow reef damage, have similar benthic and fish communities to MCEs within a National Park. Our results show that overall MCE communities are similar regardless of protection, though some taxa-specific differences exist in benthic communities between sites within the MPA and areas outside. Regardless of protection and location, and in contrast to shallow reefs, all observed Cozumel MCEs were continuous reefs with the main structural habitat complexity provided by calcareous macroalgae, sponges, gorgonians and black corals. Hard corals were present on MCEs, although at low abundance. We found that 42.5% of fish species recorded on Cozumel could be found on both shallow reefs and MCEs, including 39.6% of commercially valuable fish species. These results suggest that MCEs could play an important role in supporting fish populations. However, regardless of protection and depth, we found few large-body fishes (greater than 500 mm), which were nearly absent at all studied sites. Cozumel MCEs contain diverse benthic and fish assemblages, including commercially valuable fisheries species and ecosystem engineers, such as black corals. Because of their inherent biodiversity and identified threats, MCEs may be incorporated into shallow-reef-focused Cozumel National Park management plan.
DOI: 10.6084/m9.figshare.7206644.v1
title: ESM 7 R Code.txt from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Widespread shallow coral reef loss has led to calls for more holistic approaches to coral reef management, requiring inclusion of ecosystems interacting with shallow coral reefs in management plans. Yet, almost all current reef management is biased towards shallow reefs, and overlooks that coral reefs extend beyond shallow waters to mesophotic coral ecosystems (MCEs; 30–150 m). We present the first detailed quantitative characterization of MCEs off Cozumel, Mexico, on the northern Mesoamerican Reef in the Mexican Caribbean, and provide insights into their general state. We documented MCE biodiversity, and assessed whether MCEs adjacent to a major town and port, where coastal development has caused shallow reef damage, have similar benthic and fish communities to MCEs within a National Park. Our results show that overall MCE communities are similar regardless of protection, though some taxa-specific differences exist in benthic communities between sites within the MPA and areas outside. Regardless of protection and location, and in contrast to shallow reefs, all observed Cozumel MCEs were continuous reefs with the main structural habitat complexity provided by calcareous macroalgae, sponges, gorgonians and black corals. Hard corals were present on MCEs, although at low abundance. We found that 42.5% of fish species recorded on Cozumel could be found on both shallow reefs and MCEs, including 39.6% of commercially valuable fish species. These results suggest that MCEs could play an important role in supporting fish populations. However, regardless of protection and depth, we found few large-body fishes (greater than 500 mm), which were nearly absent at all studied sites. Cozumel MCEs contain diverse benthic and fish assemblages, including commercially valuable fisheries species and ecosystem engineers, such as black corals. Because of their inherent biodiversity and identified threats, MCEs may be incorporated into shallow-reef-focused Cozumel National Park management plan.
DOI: 10.7284/126444
title: Multibeam Echosounder data collected during research cruise SR1708 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7206641
title: Study site GPS locations. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Site indicates the survey site. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca. Area indicates whether within the National Marine Park (P) or in an unprotected area (N). Depth indicates the survey depth (m). Direction indicates whether transects were conducted following the reef depth contour broadly north (N) or south (S) from the GPS location. All GPS points given in WGS84 format.
DOI: 10.6084/m9.figshare.7206641.v1
title: Study site GPS locations. from Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area

description: Site indicates the survey site. Sites were: CO – Colombia, HE – Herradura, PJ – Palancar Jardines, PT – Punta Tunich, PU – Purgatorio, SR – Santa Rosa, TT – Transito Transbordador, VB – Villa Blanca. Area indicates whether within the National Marine Park (P) or in an unprotected area (N). Depth indicates the survey depth (m). Direction indicates whether transects were conducted following the reef depth contour broadly north (N) or south (S) from the GPS location. All GPS points given in WGS84 format.
DOI: 10.7284/131904
title: Winch data collected during research cruise SR1708 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131905
title: Winch data collected during research cruise SR1708 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131906
title: Winch data collected during research cruise SR1708 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126413
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1709 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126419
title: Expendable Probe data collected during research cruise SR1709 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7206554
title: Dataset.sav from Vocal behaviour predicts mating success in giant pandas

description: Surprisingly little is known about how mammal vocal signals are used to achieve behavioural synchrony in the lead up to copulation. The ability to signal short-term fluctuations in arousal levels and behavioural intention is likely to be particularly important for synchronizing mating behaviour in asocial species, which must overcome their natural avoidance and aggressive tendencies to mate. Here, we examined vocal behaviour during breeding encounters in captive giant pandas (<i>Ailuropoda melanoleuca</i>) to gain a greater understanding of how close-range vocal signalling mediates reproduction in this asocial, and conservation-dependent species. Our results revealed that the occurrence of different giant panda vocalizations and acoustic variation within these calls is predictive of successful encounters leading to copulation, as opposed to unsuccessful encounters that do not. In addition, key differences were detected between vocalizations produced during and just prior to copulation. These findings illustrate that vocal exchanges are crucial for achieving behavioural synchrony and signalling intention to mate in giant pandas, and could also provide a valuable tool for breeding programmes, helping conservation managers to assess the likelihood of breeding introductions leading to copulation or potentially injurious failure.
DOI: 10.6084/m9.figshare.7206557
title: Data from Competition between strains of <i>Borrelia afzelii</i> inside the rodent host and the tick vector

description: Data used for the analyses
DOI: 10.6084/m9.figshare.7206554.v1
title: Dataset.sav from Vocal behaviour predicts mating success in giant pandas

description: Surprisingly little is known about how mammal vocal signals are used to achieve behavioural synchrony in the lead up to copulation. The ability to signal short-term fluctuations in arousal levels and behavioural intention is likely to be particularly important for synchronizing mating behaviour in asocial species, which must overcome their natural avoidance and aggressive tendencies to mate. Here, we examined vocal behaviour during breeding encounters in captive giant pandas (<i>Ailuropoda melanoleuca</i>) to gain a greater understanding of how close-range vocal signalling mediates reproduction in this asocial, and conservation-dependent species. Our results revealed that the occurrence of different giant panda vocalizations and acoustic variation within these calls is predictive of successful encounters leading to copulation, as opposed to unsuccessful encounters that do not. In addition, key differences were detected between vocalizations produced during and just prior to copulation. These findings illustrate that vocal exchanges are crucial for achieving behavioural synchrony and signalling intention to mate in giant pandas, and could also provide a valuable tool for breeding programmes, helping conservation managers to assess the likelihood of breeding introductions leading to copulation or potentially injurious failure.
DOI: 10.6084/m9.figshare.7206557.v1
title: Data from Competition between strains of <i>Borrelia afzelii</i> inside the rodent host and the tick vector

description: Data used for the analyses
DOI: 10.7284/126422
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1709 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/w7kz8n3s3y.1
title: Corona and SARS Impact on Social Sciences Publications Data

description: Contains the list of publications and all details on the subject of SARS and Corona Impact on Social Sciences
DOI: 10.7284/133144
title: Gravimeter data collected during research cruise SR1709 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126421
title: Gyrocompass data collected during research cruise SR1709 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126423
title: INS (Inertial Navigation System) data collected during research cruise SR1709 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131913
title: INS (Inertial Navigation System) data collected during research cruise SR1709 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126414
title: Meteorological Station data collected during research cruise SR1709 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/t2tr35ww4c.5
title: Dataset Evaluation in Serious Games

description: Dataset to evaluate serious games The process has the following phases: Selecting the sample Defining users Define the scenario List the barriers Evaluate manually Record the data Analyze the data
DOI: 10.7284/126416
title: Multibeam Echosounder data collected during research cruise SR1709 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126418
title: Multibeam Echosounder data collected during research cruise SR1709 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/3svnh2n84r.1
title: Electrical resistivity of fcc-Fe and Fe-P alloy at 5 GPa with implications for the lunar core’s transport properties

description: These data are our high-pressure sample assemblies, chemical-composition analyses data, the calculated thermal conductivity of iron and Fe-P alloy, and estimated heat flux at the lunar core-mantle boundary. Our data show that small amounts of light elements (e.g. phosphorus) in the lunar core have no significant impact on the core’s thermal conductivity. Also, the result implies that the high-intensity magnetic field era of the lunar dynamo driven by thermal convection perhaps ended before 3.60-3.85 Ga.
DOI: 10.7284/126417
title: Singlebeam Echosounder data collected during research cruise SR1709 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7206515
title: Enhanced impact of human activities on the alpine ecosystem along the Qinghai-Tibet Railway

description: Human footprint HFP2001_QTEC120KM.tif (Human footprint data for 2001)<br> HFP2015_QTEC120KM.tif (Human footprint data for 2015)<br>NDVI datasets<br> Trend_GIMMS_2001_2015_120KM.tif (GIMMS trend data during 2001-2015) Trend_MODIS_2001_2015_120KM.tif (MODIS trend data during 2001-2015)<br>
DOI: 10.6084/m9.figshare.7206515.v1
title: Enhanced impact of human activities on the alpine ecosystem along the Qinghai-Tibet Railway

description: Human footprint HFP2001_QTEC120KM.tif (Human footprint data for 2001)<br> HFP2015_QTEC120KM.tif (Human footprint data for 2015)<br>NDVI datasets<br> Trend_GIMMS_2001_2015_120KM.tif (GIMMS trend data during 2001-2015) Trend_MODIS_2001_2015_120KM.tif (MODIS trend data during 2001-2015)<br>
DOI: 10.7284/131910
title: Winch data collected during research cruise SR1709 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition