cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7021790
title: THE USE OF VOCALIZATION SIGNALS TO ESTIMATE THE LEVEL OF PAIN IN PIGLETS

description: ABSTRACT Pain is considered a condition that most affect the welfare of animals and its measurement is seen as a difficult task. This research aimed to determine the level of pain in pigs by their vocalization. It was recorded the vocalizations of 20 male piglets under normal circumstances (I), marking by Australian method (II), tail trimming management (III), and castration (IV). A unidirectional microphone and a digital recorder were used to record the sound signals. The results suggested that Pitch frequency (Hz), the maximum amplitude (Pa), and intensity (dB) increased from pain-free pigs to the marking procedure; and from marking to both tail trimming and castration The tail trimming and castration vocal response did not differ.
DOI: 10.6084/m9.figshare.7021793.v1
title: Nursing diagnoses of patients with kidney disease undergoing hemodialysis: a cross-sectional study

description: ABSTRACT Objective: to identify Nursing Diagnoses of 5th stage chronic kidney disease patients undergoing hemodialysis. Method: cross-sectional, descriptive and quantitative study carried out with 151 patients undergoing hemodialysis in a clinic specialized in nephrology from the Northwest of the Paraná State. Nursing Diagnoses were determined through Nanda-I in which had the percentage greater than 50%. The analysis used was the simple statistics. Results: 17 Nursing Diagnoses were identified, emphasizing the risks present in 100% of patients: risks for electrolyte imbalance; ineffective kidney perfusion; infection: vascular injuries, adverse response to the iodine-based contrast-enhanced and impaired urinary elimination. Conclusion: the main diagnoses listed reflect the more frequent risks that patients undergoing hemodialysis are exposed to. Being aware of these risks allows the nursing planning with early interventions, in order to prevent complications related to the disease and to promote best life conditions.
DOI: 10.6084/m9.figshare.7021790.v1
title: THE USE OF VOCALIZATION SIGNALS TO ESTIMATE THE LEVEL OF PAIN IN PIGLETS

description: ABSTRACT Pain is considered a condition that most affect the welfare of animals and its measurement is seen as a difficult task. This research aimed to determine the level of pain in pigs by their vocalization. It was recorded the vocalizations of 20 male piglets under normal circumstances (I), marking by Australian method (II), tail trimming management (III), and castration (IV). A unidirectional microphone and a digital recorder were used to record the sound signals. The results suggested that Pitch frequency (Hz), the maximum amplitude (Pa), and intensity (dB) increased from pain-free pigs to the marking procedure; and from marking to both tail trimming and castration The tail trimming and castration vocal response did not differ.
DOI: 10.6084/m9.figshare.7021721
title: Fumagalli et al., Phagocytosis by SIM

description: Raw data from the ms by Fumagalli et al., J Neuroinflammation 2019<br>
DOI: 10.6084/m9.figshare.7021718
title: Modelling the cross-shore profiles of sand beaches using artificial neural networks

description: Artificial neural networks (ANN) have been widely used successfully to solve coastal engineering problems. In this article, they are used to model the cross-shore profile of sandy beaches taking into account the possible effect of marine vegetation (<i>Posidonia oceanica</i>). Sixty ANNs were generated by modifying both the inputs and the number of neurons in the hidden layer. The best results were obtained with the following inputs: wave height perpendicular to the coast and the associated period and probability of occurrence, median sediment size, profile slope, and energy reduction factor due to <i>P. oceanica</i>. With these inputs and 10 neurons in the hidden layer, a mean absolute error of 0.22 m during training and 0.21 m during the test was obtained, which represents an improvement of 81.2% and 55.5% compared to models without and with <i>P. oceanica</i>.
DOI: 10.6084/m9.figshare.7021721.v1
title: Fumagalli et al., Phagocytosis by SIM

description: Raw data from the ms by Fumagalli et al., J Neuroinflammation 2019<br>
DOI: 10.6084/m9.figshare.7021715
title: Dental magnetic resonance imaging for periodontal indication – a new approach of imaging residual periodontal bone support

description: <b>Objective:</b> The standard imaging techniques used in dentistry consist of two-dimensional radiographic techniques like intraoral periapical (PA) radiographs, bitewings or extraoral panoramic X-rays. Three-dimensional methods, such as cone beam computed tomography (CBCT), are not standard procedures. In several fields of dentistry, such as oral surgery or implantology, dental magnetic resonance imaging (DMRI), a technique without radiation exposure, has already been introduced as a new promising diagnostic tool. The aim of this study was to compare the agreement of DMRI and PA radiographs in measuring residual periodontal bone support. <b>Material and methods:</b> In this study, the residual periodontal bone support of 21 teeth was investigated and compared with DMRI and PA radiographs by two independent raters. Intra-class correlation coefficients (ICCs) were calculated using the software R to identify the intra-rater and inter-rater agreement of the two modalities. Bland–Altman plots were created to directly compare the two methods. <b>Results:</b> Overall, all calculated ICC values showed an excellent intra-rater and inter-rater agreement (&gt;0.9) for DMRI, as well as PA radiographs. Bland–Altman analysis also showed a strong agreement between both diagnostic methods in this study. <b>Conclusions:</b> In conclusion, there was a strong agreement between DMRI and PA. Thus, DMRI proved to be a comparable method to PA radiographs for evaluating the proportion of residual periodontal bone support.
DOI: 10.6084/m9.figshare.7021718.v1
title: Modelling the cross-shore profiles of sand beaches using artificial neural networks

description: Artificial neural networks (ANN) have been widely used successfully to solve coastal engineering problems. In this article, they are used to model the cross-shore profile of sandy beaches taking into account the possible effect of marine vegetation (<i>Posidonia oceanica</i>). Sixty ANNs were generated by modifying both the inputs and the number of neurons in the hidden layer. The best results were obtained with the following inputs: wave height perpendicular to the coast and the associated period and probability of occurrence, median sediment size, profile slope, and energy reduction factor due to <i>P. oceanica</i>. With these inputs and 10 neurons in the hidden layer, a mean absolute error of 0.22 m during training and 0.21 m during the test was obtained, which represents an improvement of 81.2% and 55.5% compared to models without and with <i>P. oceanica</i>.
DOI: 10.6084/m9.figshare.7021709
title: Code from ENSO effects on the transpiration of eastern Amazon trees

description: Code used on R software
DOI: 10.6084/m9.figshare.7021715.v1
title: Dental magnetic resonance imaging for periodontal indication – a new approach of imaging residual periodontal bone support

description: <b>Objective:</b> The standard imaging techniques used in dentistry consist of two-dimensional radiographic techniques like intraoral periapical (PA) radiographs, bitewings or extraoral panoramic X-rays. Three-dimensional methods, such as cone beam computed tomography (CBCT), are not standard procedures. In several fields of dentistry, such as oral surgery or implantology, dental magnetic resonance imaging (DMRI), a technique without radiation exposure, has already been introduced as a new promising diagnostic tool. The aim of this study was to compare the agreement of DMRI and PA radiographs in measuring residual periodontal bone support. <b>Material and methods:</b> In this study, the residual periodontal bone support of 21 teeth was investigated and compared with DMRI and PA radiographs by two independent raters. Intra-class correlation coefficients (ICCs) were calculated using the software R to identify the intra-rater and inter-rater agreement of the two modalities. Bland–Altman plots were created to directly compare the two methods. <b>Results:</b> Overall, all calculated ICC values showed an excellent intra-rater and inter-rater agreement (&gt;0.9) for DMRI, as well as PA radiographs. Bland–Altman analysis also showed a strong agreement between both diagnostic methods in this study. <b>Conclusions:</b> In conclusion, there was a strong agreement between DMRI and PA. Thus, DMRI proved to be a comparable method to PA radiographs for evaluating the proportion of residual periodontal bone support.
DOI: 10.6084/m9.figshare.7021706
title: Metadata from ENSO effects on the transpiration of eastern Amazon trees

description: Tree transpiration is important in the recycling of precipitation in the Amazon and might be negatively affected by El Niño–Southern Oscillation (ENSO)-induced droughts. To investigate the relative importance of soil moisture deficits versus increasing atmospheric demand (VPD) and determine if these drivers exert different controls over tree transpiration during the wet season versus the dry season (DS), we conducted sap flow measurements in a primary lowland tropical forest in eastern Amazon during the most extreme ENSO-induced drought (2015/2016) recorded in the Amazon. We also assessed whether trees occupying different canopy strata contribute equally to the overall stand transpiration (<i>T</i><sub>stand</sub>). Canopy trees were the primary source of <i>T</i><sub>stand</sub>. However, subcanopy trees are still important as they transpired an amount similar to other biomes around the globe. Tree water use was higher during the DS, indicating that during extreme drought trees did not reduce transpiration in response to low soil moisture. Photosynthetically active radiation and VPD exerted an overriding effect on water use patterns relative to soil moisture during extreme drought, indicating that light and atmospheric constraints play a critical role in controlling ecosystem fluxes of water. Our study highlights the importance of canopy and subcanopy trees to the regional water balance and highlights the resilience to droughts that these trees show during an extreme ENSO event.This article is part of a discussion meeting issue ‘The impact of the 2015/2016 El Niño on the terrestrial tropical carbon cycle: patterns, mechanisms and implications’.
DOI: 10.6084/m9.figshare.7021703
title: Full data set from ENSO effects on the transpiration of eastern Amazon trees

description: Tree transpiration is important in the recycling of precipitation in the Amazon and might be negatively affected by El Niño–Southern Oscillation (ENSO)-induced droughts. To investigate the relative importance of soil moisture deficits versus increasing atmospheric demand (VPD) and determine if these drivers exert different controls over tree transpiration during the wet season versus the dry season (DS), we conducted sap flow measurements in a primary lowland tropical forest in eastern Amazon during the most extreme ENSO-induced drought (2015/2016) recorded in the Amazon. We also assessed whether trees occupying different canopy strata contribute equally to the overall stand transpiration (<i>T</i><sub>stand</sub>). Canopy trees were the primary source of <i>T</i><sub>stand</sub>. However, subcanopy trees are still important as they transpired an amount similar to other biomes around the globe. Tree water use was higher during the DS, indicating that during extreme drought trees did not reduce transpiration in response to low soil moisture. Photosynthetically active radiation and VPD exerted an overriding effect on water use patterns relative to soil moisture during extreme drought, indicating that light and atmospheric constraints play a critical role in controlling ecosystem fluxes of water. Our study highlights the importance of canopy and subcanopy trees to the regional water balance and highlights the resilience to droughts that these trees show during an extreme ENSO event.This article is part of a discussion meeting issue ‘The impact of the 2015/2016 El Niño on the terrestrial tropical carbon cycle: patterns, mechanisms and implications’.
DOI: 10.6084/m9.figshare.7021691
title: Bird level data.csv

description: Raw data at individual bird level for all behavioural, EEG and pathology parameters.
DOI: 10.6084/m9.figshare.7021691.v4
title: Bird level data.csv

description: Raw data at individual bird level for all behavioural, EEG and pathology parameters.
DOI: 10.6084/m9.figshare.7021691.v3
title: Bird level data.csv

description: Raw data at individual bird level for all behavioural, EEG and pathology parameters.
DOI: 10.6084/m9.figshare.7021583
title: Richieste di asilo ed esito per anno in Italia, 1990-2017

description: I dati sono forniti dalla Commissione Nazionale per il Diritto di Asilo:http://www.libertaciviliimmigrazione.dlci.interno.gov.it/it/documentazione/statistica/i-numeri-dellasilo<br><br>Copia archiviata:http://www.webcitation.org/721rC2GwJ<br>
DOI: 10.6084/m9.figshare.7021583.v1
title: Richieste di asilo ed esito per anno in Italia, 1990-2017

description: I dati sono forniti dalla Commissione Nazionale per il Diritto di Asilo:http://www.libertaciviliimmigrazione.dlci.interno.gov.it/it/documentazione/statistica/i-numeri-dellasilo<br><br>Copia archiviata:http://www.webcitation.org/721rC2GwJ<br>
DOI: 10.6084/m9.figshare.7021400

description: Appendix S2. Spatial patterns of species-specific establishment threat under current, 2050s and 2070s climate scenados for the 115 nonnative freshwater fish species.
DOI: 10.6084/m9.figshare.7021151
title: Additional file 1: of Expanding the agenda for addressing mistreatment in maternity care: a mapping review and gender analysis

description: Table S1. Mapping Review and Gender Analysis Data xlsx Articles Reviewed and Mapped to Gender Domains. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7021151.v1
title: Additional file 1: of Expanding the agenda for addressing mistreatment in maternity care: a mapping review and gender analysis

description: Table S1. Mapping Review and Gender Analysis Data xlsx Articles Reviewed and Mapped to Gender Domains. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7021115
title: MOESM2 of Type and capacity of glucose transport influences succinate yield in two-stage cultivations

description: Additional file 2. Model structure and FBA resultsÂ for the different strains.
DOI: 10.6084/m9.figshare.7021115.v1
title: MOESM2 of Type and capacity of glucose transport influences succinate yield in two-stage cultivations

description: Additional file 2. Model structure and FBA resultsÂ for the different strains.
DOI: 10.6084/m9.figshare.7021109
title: Additional file 3: of Biochemical and pathological changes result from mutated Caveolin-3 in muscle

description: Table S1. Overview of all proteomic findings. (XLSX 915 kb)
DOI: 10.6084/m9.figshare.7021109.v1
title: Additional file 3: of Biochemical and pathological changes result from mutated Caveolin-3 in muscle

description: Table S1. Overview of all proteomic findings. (XLSX 915 kb)
DOI: 10.6084/m9.figshare.7021100
title: Additional file 2: of Prevalence and incidence of sarcoidosis in Korea: a nationwide population-based study

description: Figure S1. A seasonal variation in sarcoidosis incidence rate from 2009 to 2015. Q1, the first quarter; Q2, the second quarter; Q3, the third quarter; Q4, the fourth quarter. Figure S2. Annual change in the proportion of incident cases with claims for bronchoscopy. (ZIP 82 kb)
DOI: 10.6084/m9.figshare.7021100.v1
title: Additional file 2: of Prevalence and incidence of sarcoidosis in Korea: a nationwide population-based study

description: Figure S1. A seasonal variation in sarcoidosis incidence rate from 2009 to 2015. Q1, the first quarter; Q2, the second quarter; Q3, the third quarter; Q4, the fourth quarter. Figure S2. Annual change in the proportion of incident cases with claims for bronchoscopy. (ZIP 82 kb)
DOI: 10.6084/m9.figshare.7021043
title: Additional file 8: of miRge 2.0 for comprehensive analysis of microRNA sequencing data

description: Table S6. Novel miRNAs detected by miRge 2.0, miRDeep2 and miRAnalyzer. (XLSX 167 kb)
DOI: 10.6084/m9.figshare.7021043.v1
title: Additional file 8: of miRge 2.0 for comprehensive analysis of microRNA sequencing data

description: Table S6. Novel miRNAs detected by miRge 2.0, miRDeep2 and miRAnalyzer. (XLSX 167 kb)
DOI: 10.6084/m9.figshare.7021034
title: Additional file 3: of Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

description: Table S7. Genes associated with archaeal metabolism obtained from shotgun metagenomic sequencing (XLS 24Â kb)
DOI: 10.6084/m9.figshare.7021034.v1
title: Additional file 3: of Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

description: Table S7. Genes associated with archaeal metabolism obtained from shotgun metagenomic sequencing (XLS 24Â kb)
DOI: 10.6084/m9.figshare.7021007
title: Additional file 2: of Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

description: Table S6. Taxonomic count of shotgun data for this study. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.7021007.v1
title: Additional file 2: of Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

description: Table S6. Taxonomic count of shotgun data for this study. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.7020932
title: Additional file 1: of Modelling the cost-effectiveness of pay-for-performance in primary care in the UK

description: The model, which is the full simulation model used to perform the cost-effectiveness analyses, is programed in Microsoft Excel with Visual Basic for Applications (VBA). (XLSM 648 kb)
DOI: 10.6084/m9.figshare.7020932.v1
title: Additional file 1: of Modelling the cost-effectiveness of pay-for-performance in primary care in the UK

description: The model, which is the full simulation model used to perform the cost-effectiveness analyses, is programed in Microsoft Excel with Visual Basic for Applications (VBA). (XLSM 648 kb)
DOI: 10.6084/m9.figshare.7020917
title: Additional file 1: of Association of airborne particles, protein, and endotoxin with emergency department visits for asthma in Kyoto, Japan

description: Figure S1. Mass concentrations of fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). Figure S2. Concentrations of protein in fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). Figure S3. Concentrations of endotoxin in fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). (ZIP 1803 kb)
DOI: 10.6084/m9.figshare.7020917.v1
title: Additional file 1: of Association of airborne particles, protein, and endotoxin with emergency department visits for asthma in Kyoto, Japan

description: Figure S1. Mass concentrations of fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). Figure S2. Concentrations of protein in fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). Figure S3. Concentrations of endotoxin in fine (a) and coarse (b) particles in the outdoor air of Kyoto, Japan (September 2014–May 2016). (ZIP 1803 kb)
DOI: 10.6084/m9.figshare.7020905
title: Additional file 2: of Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels

description: Additional annotations for rQTL and G×G SNPs. Contains additional annotations for the rQTL in Table 2 and G×G SNPs in Table 3 in the main text. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7020905.v1
title: Additional file 2: of Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels

description: Additional annotations for rQTL and G×G SNPs. Contains additional annotations for the rQTL in Table 2 and G×G SNPs in Table 3 in the main text. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7020893
title: Additional file 4: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Robin direction data.Â Radar data from horizontal surveillance radar (HSR) antenna on Robin unit, used in analyses of flight direction. (XLSX 10359 kb)
DOI: 10.6084/m9.figshare.7020893.v1
title: Additional file 4: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Robin direction data.Â Radar data from horizontal surveillance radar (HSR) antenna on Robin unit, used in analyses of flight direction. (XLSX 10359 kb)
DOI: 10.6084/m9.figshare.7020878
title: Additional file 3: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Batman direction data. Radar data from horizontal surveillance radar (HSR) antenna on Batman unit, used in analyses of flight direction. (XLSX 12941 kb)
DOI: 10.6084/m9.figshare.7020878.v1
title: Additional file 3: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Batman direction data. Radar data from horizontal surveillance radar (HSR) antenna on Batman unit, used in analyses of flight direction. (XLSX 12941 kb)
DOI: 10.6084/m9.figshare.7020869
title: Additional file 2: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Slope test script. R script for Poisson least rectangles regression slope test used in radar comparison and shoreline-to-inland comparisons. (R 4 kb)
DOI: 10.6084/m9.figshare.7020869.v1
title: Additional file 2: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: Slope test script. R script for Poisson least rectangles regression slope test used in radar comparison and shoreline-to-inland comparisons. (R 4 kb)
DOI: 10.6084/m9.figshare.7020857
title: Additional file 1: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: VSR activity data.Â Radar data from vertical scanning radar (VSR) antenna used to measureÂ target passage rate (TPR). (XLSX 106 kb)
DOI: 10.6084/m9.figshare.7020857.v1
title: Additional file 1: of Radar quantifies migrant concentration and Dawn reorientation at a Great Lakes shoreline

description: VSR activity data.Â Radar data from vertical scanning radar (VSR) antenna used to measureÂ target passage rate (TPR). (XLSX 106 kb)
DOI: 10.6084/m9.figshare.7020842
title: Additional file 4 of A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling

description: Percentage of domain hits wrt all domain annotations (% tot) and wrt bacterial CCM annotations (% bacteria) (XLS 127 kb)
DOI: 10.6084/m9.figshare.7020842.v1
title: Additional file 4 of A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling

description: Percentage of domain hits wrt all domain annotations (% tot) and wrt bacterial CCM annotations (% bacteria) (XLS 127 kb)
DOI: 10.6084/m9.figshare.7020830
title: Additional file 4: of Pathogen seasonality and links with weather in England and Wales: a big data time series analysis

description: Table S2. Mean cross correlations for weather Groups. (CSV 346 bytes)
DOI: 10.6084/m9.figshare.7020824
title: Additional file 3 of A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling

description: Total number of nodes in the tree-graph rooted on a specific GO-term (XLS 35 kb)