cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/135331
title: Meteorological Station data collected during research cruise SP1919 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135329
title: Singlebeam Echosounder data collected during research cruise SP1919 using a Knudsen 320B/R instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135330
title: Winch data collected during research cruise SP1919 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135338
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1920 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135343
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1920 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135344
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1920 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7211759
title: Data for 'Geomorphic inferences from regolith thickness, chemical denudation and CRN erosion rates near the glacial limit, Boulder Creek catchment and vicinity, Colorado'

description: These data accompany the analysis of regolith weathering across ~940 km<sup>2</sup> of the Front Range (Colorado, USA) described by Dethier & Lazarus (2006).<br>We collected data from 1872 paper records of well-drillers' logs held on file at the Colorado Department of Water Resources (Denver office). We used every interpretable record from the Allens Park, Eldorado Springs, Gold Hill, Nederland, Tungsten, and Ward quadrangles. We recorded the thickness of overburden, alluvium, and highly weathered regolith, along with the total weathered thickness, depth to fresh bedrock, total well depth, and any drillers’ notes. We then digitized well locations (and their associated data) on topographic quadrangles in ESRI ArcMap. The maximum probable location error for any well in the dataset is the area of a 1/16 section (approximately 0.16 km<sup>2</sup>). See Dethier & Lazarus (2016) a detailed description of the methods.<br>This data file includes the following attributes:<br><b>OBJECT_ID & NEW_ID</b> (identification index)<b>WELL_NUMBE</b> (well number assigned by the Colorado Department of Water Resources)<b>POINT_X</b> (UTM Northing – NAD 1983 UTM Zone 13N)<b>POINT_Y</b> (UTM Easting – NAD 1983 UTM Zone 13N)<b>QUADRANGLE</b> (Colorado state 7.5' quadrangle)<b>TOWNSHIP</b> (township notation in quadrangle)<b>RANGE</b> (range notation in quadrangle)<b>SECTION </b>(section number in quadrangle)<b>QUARTER</b> (quarter location within QUARTER_1)<b>QUARTER_1</b> (quarter location within section)<b>OVERBURDEN & OVRBRDN_M</b> (overburden thickness, in ft & m)<b>ALLUVIAL_ & ALLUVIAL_M</b> (alluvial thickness, in ft & m)<b>HIGHLY & HIGHLY_M</b> (highly weathered thickness, in ft & m)<b>TOTAL & TOTAL_M</b> (total weathered thickness, in ft & m)<b>DEPTH & DEPTH_M</b> (depth to bedrock, in ft & m)<b>MINIMUM & MINMM_M</b> (minimum drilled well depth, in ft & m)<b>DIST_FLTS</b> (using geologic map of Colorado by Green (1992), distance to nearest fault or dike, in m)<b>DIST_STREAMS</b> (using geologic map of Colorado by Green (1992), distance to nearest third-order stream (or larger), in m)<b>ROCK_TYPE</b> (code corresponds to geologic unit in geologic map of Colorado by Green (1992): 1 = sedimentary units; 2 = Od; 3 = Ogo; 4 = Yg; 5 = Xg; 6 = Xb; 7 = Xq; 8 = Xfh; 9 = Tki; 10 = Tgv; 11 = water)<b>SLOPE</b> (approximate local slope, in degrees)<b>NOTES</b> (well drillers' notes)<br><b>REFERENCES</b>Dethier DP, Lazarus ED (2006) Geomorphic inferences from regolith thickness near the glacial limit, Boulder Creek catchment, Colorado, <i>Geomorphology</i> 75, 384–399<br>Green GN (1992) The digital geologic map of Colorado in ARC/INFO format, US Geological Survey Open-File Report 92-507.
DOI: 10.7284/135346
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1920 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135347
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1920 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7211678
title: Supplementary Material for: Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients

description: <b><i>Background:</i></b> The gut microbiota is altered in patients with chronic kidney disease (CKD), and cardiovascular risk increases with progressive CKD. This study examined the potential link between short chain fatty acids (SCFAs), which are produced by the gut microbiota, and cardiovascular outcomes in patients with CKD. <b><i>Methods:</i></b> SCFAs were measured using a targeted liquid chromatography-mass spectrometry platform in baseline plasma samples from 214 patients with CKD enrolled in the Clinical Phenotyping Resource and Biobank Core; 81 patients with coronary artery disease (CAD) and 133 without CAD were randomly assigned to training and validation subsets. The primary outcome was a history of CAD and the secondary outcome was a composite history of cardiovascular disease (CVD) at enrollment. <b><i>Results:</i></b> We found significantly higher levels of the SCFA valerate among patients with CAD as compared with patients without CAD in the training set (<i>p</i> &lt; 0.001). The valerate concentrations were also significantly higher among subjects with composite outcomes of CVD compared to those without CVD (<i>p</i> = 0.006). These results were subsequently replicated in the validation set. Logistic regression analysis revealed a strong independent association between plasma valerate levels and CVD in both training and validation sets. When valerate was added to the base clinical model comprising of diabetes, hypertension, urinary protein-creatinine ratio, and estimated glomerular filtration rate, it increased the c-statistics for predicting CVD from 0.68 to 0.79 (<i>p</i> = 0.02) in the training set, an observation which was confirmed in the validation set. ­<b><i>Conclusion:</i></b> This study provides evidence for alterations in gut-microbiota-derived SCFAs with advancing CKD, demonstrates the association of higher plasma valerate levels with pre-existing CVD, and reveals areas for future exploration of cardiovascular risk in patients with CKD.
DOI: 10.7284/135342
title: Gyrocompass data collected during research cruise SP1920 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7211678.v1
title: Supplementary Material for: Gut Microbial Product Predicts Cardiovascular Risk in Chronic Kidney Disease Patients

description: <b><i>Background:</i></b> The gut microbiota is altered in patients with chronic kidney disease (CKD), and cardiovascular risk increases with progressive CKD. This study examined the potential link between short chain fatty acids (SCFAs), which are produced by the gut microbiota, and cardiovascular outcomes in patients with CKD. <b><i>Methods:</i></b> SCFAs were measured using a targeted liquid chromatography-mass spectrometry platform in baseline plasma samples from 214 patients with CKD enrolled in the Clinical Phenotyping Resource and Biobank Core; 81 patients with coronary artery disease (CAD) and 133 without CAD were randomly assigned to training and validation subsets. The primary outcome was a history of CAD and the secondary outcome was a composite history of cardiovascular disease (CVD) at enrollment. <b><i>Results:</i></b> We found significantly higher levels of the SCFA valerate among patients with CAD as compared with patients without CAD in the training set (<i>p</i> &lt; 0.001). The valerate concentrations were also significantly higher among subjects with composite outcomes of CVD compared to those without CVD (<i>p</i> = 0.006). These results were subsequently replicated in the validation set. Logistic regression analysis revealed a strong independent association between plasma valerate levels and CVD in both training and validation sets. When valerate was added to the base clinical model comprising of diabetes, hypertension, urinary protein-creatinine ratio, and estimated glomerular filtration rate, it increased the c-statistics for predicting CVD from 0.68 to 0.79 (<i>p</i> = 0.02) in the training set, an observation which was confirmed in the validation set. ­<b><i>Conclusion:</i></b> This study provides evidence for alterations in gut-microbiota-derived SCFAs with advancing CKD, demonstrates the association of higher plasma valerate levels with pre-existing CVD, and reveals areas for future exploration of cardiovascular risk in patients with CKD.
DOI: 10.7284/135341
title: Meteorological Station data collected during research cruise SP1920 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135339
title: Singlebeam Echosounder data collected during research cruise SP1920 using a Knudsen 320B/R instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135340
title: Winch data collected during research cruise SP1920 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134915
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1922 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134920
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1922 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134921
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1922 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134923
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1922 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7211564
title: Risk factors and human chorionic gonadotropin trends in patients with ruptured tubal ectopic pregnancies despite methotrexate treatment

description: This retrospective cohort study investigates the risk factors and beta-human chorionic gonadotropin (β-hCG) trends in patients with ruptured tubal ectopic pregnancies (EPs) despite methotrexate (MTX) treatment. All patients receiving MTX for sonographically confirmed tubal EPs at our fertility center between 2004 and 2014 were included. Baseline demographics and β-hCG trends of patients with EP rupture after MTX were compared to patients with resolved EPs after MTX. One-hundred-thirty-seven patients with EPs were treated with MTX during the study duration; 27 experienced EP rupture and 110 EP resolution. There was no difference in the baseline demographics or β-hCG levels on the day of MTX between the groups. Patients with ruptured EPs after MTX had higher β-hCG levels on day-4 (1223.9 ± 243.5 vs. 1111.2 ± 179.7 mIU/mL; <i>p</i> p
DOI: 10.6084/m9.figshare.7211564.v1
title: Risk factors and human chorionic gonadotropin trends in patients with ruptured tubal ectopic pregnancies despite methotrexate treatment

description: This retrospective cohort study investigates the risk factors and beta-human chorionic gonadotropin (β-hCG) trends in patients with ruptured tubal ectopic pregnancies (EPs) despite methotrexate (MTX) treatment. All patients receiving MTX for sonographically confirmed tubal EPs at our fertility center between 2004 and 2014 were included. Baseline demographics and β-hCG trends of patients with EP rupture after MTX were compared to patients with resolved EPs after MTX. One-hundred-thirty-seven patients with EPs were treated with MTX during the study duration; 27 experienced EP rupture and 110 EP resolution. There was no difference in the baseline demographics or β-hCG levels on the day of MTX between the groups. Patients with ruptured EPs after MTX had higher β-hCG levels on day-4 (1223.9 ± 243.5 vs. 1111.2 ± 179.7 mIU/mL; <i>p</i> p
DOI: 10.6084/m9.figshare.7211570
title: Dataset for: Clade-specific evolutionary diversification along ontogenetic major axes in avian limb skeleton

description: The evolutionary diversification of birds has been facilitated by specializations for various locomotor modes, with which the proportion of the limb skeleton is closely associated. However, recent studies have identified phylogenetic signals in this system, suggesting the presence of historical factors that have affected its evolutionary variability. In this study, in order to explore potential roles of ontogenetic integration in biasing the evolution in the avian limb skeleton, evolutionary diversification patterns in six avian families (Anatidae, Procellariidae, Ardeidae, Phalacrocoracidae, Laridae, and Alcidae) were examined and compared to the postnatal ontogenetic trajectories in those taxa, based on measurement of 2641 specimens and recently collected ontogenetic series, supplemented by published data. Morphometric analyses of lengths of six limb bones (humerus, ulna, carpometacarpus, femur, tibiotarsus, and tarsometatarsus) demonstrated that: 1) ontogenetic trajectories are diverse among families; 2) evolutionary diversification is significantly anisotropic; and, most importantly, 3) major axes of evolutionary diversification are correlated with clade-specific ontogenetic major axes in the shape space. These results imply that the evolutionary variability of the avian limbs has been biased along the clade-specific ontogenetic trajectories. It may explain peculiar diversification patterns characteristic to some avian groups, including the long-leggedness in Ardeidae and tendency for flightlessness in Anatidae.
DOI: 10.7284/134924
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1922 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134919
title: Gyrocompass data collected during research cruise SP1922 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134918
title: Meteorological Station data collected during research cruise SP1922 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134916
title: Singlebeam Echosounder data collected during research cruise SP1922 using a Knudsen 320B/R instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.7211540
title: Water Energy Nexus - Model

description: This dataset contains the SATIM-W model runs and assumptions for the study.<br><br>The interdependency between water and energy is growing in importance as demands for both water and energy increase. Several regions of the world are already experiencing water and energy security challenges, which adversely affect sustainable economic growth. In addition, the world’s population is expected to grow, which will in turn increase demand for water and energy, especially in fast-growing developing countries. The project aims to represent the evolving cost of water to the technologies represented in an energy system’s planning model, ERC’s SATIM model, by representing the planned augmentation schemes for key water supply regions to 2050 and their projected costs and capacities. This will thus be a water-smart energy planning model (SATIM-W) which is hoped will give powerful insights into infrastructure decisions when combined with climate scenarios.
DOI: 10.7284/134917
title: Winch data collected during research cruise SP1922 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.7211540.v1
title: Water Energy Nexus - Model

description: This dataset contains the SATIM-W model runs and assumptions for the study.<br><br>The interdependency between water and energy is growing in importance as demands for both water and energy increase. Several regions of the world are already experiencing water and energy security challenges, which adversely affect sustainable economic growth. In addition, the world’s population is expected to grow, which will in turn increase demand for water and energy, especially in fast-growing developing countries. The project aims to represent the evolving cost of water to the technologies represented in an energy system’s planning model, ERC’s SATIM model, by representing the planned augmentation schemes for key water supply regions to 2050 and their projected costs and capacities. This will thus be a water-smart energy planning model (SATIM-W) which is hoped will give powerful insights into infrastructure decisions when combined with climate scenarios.
DOI: 10.7284/134934
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1924 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134938
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1924 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134939
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1924 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.7211453
title: DLR Sample Data

description: De-identified power consumption sample data from the DLR dataset that can be used for learning to navigate CKAN data portals and visual data exploration.
DOI: 10.7284/134941
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1924 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25375/uct.7211453.v1
title: DLR Sample Data

description: De-identified power consumption sample data from the DLR dataset that can be used for learning to navigate CKAN data portals and visual data exploration.
DOI: 10.7284/134942
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1924 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134937
title: Gyrocompass data collected during research cruise SP1924 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134936
title: Meteorological Station data collected during research cruise SP1924 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134935
title: Winch data collected during research cruise SP1924 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134943
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1925 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134948
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1925 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7210931
title: Somatic embryogenesis and evaluation of genetic fidelity in <i>Amorphophallus paeoniifolius</i> (Dennst.) Nicolson

description: <i>Amorphophallus paeoniifolius</i> (Dennst.) Nicolson (elephant foot yam) is a well-known vegetable tuber plant that belongs to medicinally important family Araceae. The present study reports on establishment of somatic embryogenesis using shoot apices as explants and assessment of genetic fidelity of regenerated plants using random amplified polymorphic DNA (RAPD) markers. Highest somatic embryo formation (100%) was obtained on Murashige and Skoog (MS) medium supplemented with 6-benzylaminopurine (BAP) (13.31 µM) and 3% sucrose, whereas lowest percentage of somatic embryos was recorded on medium supplemented with different concentrations of indole-3-acetic acid and 2,4-dichlorophenoxyacetic acid (2,4-d). Mature somatic embryos germinated readily on MS basal medium supplemented with coconut water (15%) and BAP (4.43 µM) and developed into normal plantlets after 4 weeks under dark conditions. Well-rooted plants were successfully acclimatized on half-strength MS medium; survival rate was 85%. The assessment of genetic fidelity and stability of regenerated plantlets from somatic embryos using RAPD markers resulted in monomorphic banding pattern that confirmed the genetic homogeneity of the regenerated plantlets. The protocol for somatic embryogenesis and regeneration of plantlets with low risk of genetic instability of <i>A. paeoniifolius</i> reported here is highly reproducible. This represents the first report on <i>in vitro</i> regeneration and RAPD assessment in <i>A. paeoniifolius</i>.
DOI: 10.7284/134949
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1925 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition