cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0177859.10fu
title: SH0177859.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.57745/ljyumz
title: Experimental_RUP-SF_Database.zip

description: :unav
DOI: 10.15156/bio/sh0177860.10fu
title: SH0177860.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17365722
title: Polymyxins slow down lateral diffusion of proteins and lipopolysaccharide in the E. coli outer membrane

description: Simulation files are included as follows:





gro_atmd.zip



Coordinate (*.gro) files from atomistic simulations









gro_cgmd.zip



Coordinate (*.gro) files from coarse-grained simulations





Each gro_*.zip file includes (i) the initial coordinates of each simulation system, and (ii) the final coordinates of each simulation replicate of each system.

Note: Coordinates of water molecules are excluded to reduce file sizes. Nonetheless, the number of water molecules in each system is mentioned in the corresponding *.top files.

 





mdp_topol.zip



MD simulation parameter (*.mdp) files

Topology (*.top) files - info on the number of molecules of each component in the simulation system









itp.zip



Topology parameter (*.itp) files describing atom type, bond, angle, dihedral etc. for each protein, lipid, polymyxin and solvent type.

ATMD directory - atomistic simulations

CGMD directory - coarse-grained simulations




Numerical source data for each quantitative plot (based on figure numbers) are provided in : Num_data_for_quant_plots.zip
DOI: 10.15468/dl.s5b94g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Insecta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-90 -22.5,-82.5 -22.5,-82.5 -15,-90 -15,-90 -22.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041338-251009101135966/datasets/export for details.
DOI: 10.15468/dl.9v985s
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((127.5 -7.5,135 -7.5,135 0,127.5 0,127.5 -7.5))"
 ]
}

 The dataset includes 800 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041339-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwm7n3
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Taraxacum dealbatum"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041336-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xayhuk
title: Occurrence Download

description: A dataset containing 1492579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Numenius phaeopus (Linnaeus, 1758), Numenius arquata suschkini Neumann, 1929)"
 ]
}

 The dataset includes 1492579 records from 1068 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011205-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cza235
title: Occurrence Download

description: A dataset containing 6061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is FIN.5.5.1_1",
 "IucnRedListCategory is one of (NT, VU, EN, CR)"
 ]
}

 The dataset includes 6061 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011216-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qur8m4
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 {
 "or" : [
 "Geometry POLYGON((7.46001 43.92993,7.2073 38.67302,15.11704 35.76633,18.86933 40.09995,13.76059 46.19521,6.64358 45.99022,6.65799 44.35256,7.46001 43.92993))",
 "Geometry POLYGON((6.62038 45.9229,7.35412 38.98297,15.24178 35.46715,18.91047 40.05301,13.77431 46.16748,10.83936 47.60438,6.62038 45.9229))"
 ]
 },
 "TaxonKey is Eresus Walckenaer, 1805"
 ]
}

 The dataset includes 126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011217-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v3ac6
title: Occurrence Download

description: A dataset containing 3769900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Limosa lapponica (Linnaeus, 1758), Limosa limosa (Linnaeus, 1758), Arenaria interpres (Linnaeus, 1758))"
 ]
}

 The dataset includes 3769900 records from 1350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011210-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9fcds
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.22 53.71,-5.22 54.52,-3.62 54.52,-3.62 53.71,-5.22 53.71))",
 "HasCoordinate is true",
 "TaxonKey is Mya arenaria Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 69 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003781-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfomet
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stigmatosema hatschbachii (Pabst) Garay"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003781-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53qr3y
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-11.03291 35.17418,4.06949 35.17418,4.06949 43.95996,-11.03291 43.95996,-11.03291 35.17418))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acacia provincialis A.Camus"
 ]
}

 The dataset includes 32 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033216-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpjh83
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gastrotheca espeletia Duellman & Hillis, 1987",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003782-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd988s
title: Occurrence Download

description: A dataset containing 5670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Woodwardia radicans (L.) Sm."
 ]
}

 The dataset includes 5670 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033224-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sggfzt
title: Occurrence Download

description: A dataset containing 1522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oeneis jutta Hübner, 1806",
 "Country is Canada"
 ]
}

 The dataset includes 1522 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003782-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqkpmh
title: Occurrence Download

description: A dataset containing 10292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Elapidae"
 ]
}

 The dataset includes 10292 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033227-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4f2xz5
title: Occurrence Download

description: A dataset containing 679616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((2.479608666666667 48.58410666666667, 2.479608666666667 65.67073733333334, -31.565747 65.67073733333334, -31.565747 48.58410666666667, 2.479608666666667 48.58410666666667))",
 "EventDate is 2021-07-01,2021-07-31"
 ]
}

 The dataset includes 679616 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033230-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn1ubn
title: Occurrence Download

description: A dataset containing 1385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stictocardia Hallier f."
 ]
}

 The dataset includes 1385 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003782-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw2l2e
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia heterophylla (Lam.) Willd."
 ]
}

 The dataset includes 168 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003782-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93hhkr
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tapirus terrestris (Linnaeus, 1758)",
 "Year 2020-2023"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150250-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzqmyp
title: Occurrence Download

description: A dataset containing 126769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peromyscus maniculatus (Wagner, 1845)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 126769 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwzme8
title: Occurrence Download

description: A dataset containing 343560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachurus Rafinesque, 1810"
 ]
}

 The dataset includes 343560 records from 395 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033260-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4lt7ro
title: Occurrence Download

description: A dataset containing 1706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1706 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cweju3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tapirus terrestris (Linnaeus, 1758)",
 "Year 2020-2023"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150249-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.09bknd
title: Occurrence Download

description: A dataset containing 2076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)",
 "Country is Canada"
 ]
}

 The dataset includes 2076 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbt8td
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cousinia vvedenskyi Tscherneva"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150252-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vukxuo
title: Occurrence Download

description: A dataset containing 983 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 2) Distribution of planktonic foraminifera in the larger size fraction of ODP Hole 120-747A"
 ]
}

 The dataset includes 983 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgw8zn
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Presbytis comata (Desmarest, 1822)"
 ]
}

 The dataset includes 115 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049111-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrd02c
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syrphidae",
 "Country is New Caledonia"
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drsehk
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cousinia wilhelminae Rech.fil."
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150260-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1hgwbr
title: Occurrence Download

description: A dataset containing 24696 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Larus hartlaubii Bruch, 1855"
 ]
}

 The dataset includes 24696 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh5dv5
title: Occurrence Download

description: A dataset containing 1568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 1568 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033223-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md0fu5
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blastobasis maroccanella Amsel, 1952",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003783-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak6pw4
title: Occurrence Download

description: A dataset containing 2002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "EventDate is less than or equal to 2023-10-31",
 "EventDate is greater than or equal to 2023-10-24",
 "DecimalLatitude is greater than or equal to 35",
 "DecimalLatitude is less than or equal to 72",
 "DecimalLongitude is greater than or equal to -86",
 "DecimalLongitude is less than or equal to -47"
 ]
}

 The dataset includes 2002 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033226-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m0yj73
title: Occurrence Download

description: A dataset containing 4464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osteopilus septentrionalis (Duméril & Bibron, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4464 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003784-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dk7dsp
title: Occurrence Download

description: A dataset containing 3377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-107.72231 26.34013,-108.0242 19.48669,-95.34491 13.60553,-85.88575 18.5353,-85.88575 23.5116,-96.25057 26.61036,-107.72231 26.34013))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poecilia mexicana Steindachner, 1863",
 "Year 1970-2023"
 ]
}

 The dataset includes 3377 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041022-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.boz5w7
title: Occurrence Download

description: A dataset containing 3105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus ignescens (Cornalia, 1849)"
 ]
}

 The dataset includes 3105 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003784-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu38ms
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Costa Rica",
 "TaxonKey is Erythrina gibbosa Cufod."
 ]
}

 The dataset includes 147 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033231-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.