cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8233955
title: Dataset of Clinical efficacy.pdf

description: Vaginitis sows were diagnosed by the presence of purulent or mucopurulent uterine exudate in the vagina. 100 sows that developed vaginitis within 1 month of delivery, at more than 10,000 pig farms in three different areas of Guangdong Province，were selected for treatment . And 150 sows with vaginitis within 1 month of delivery, at more than 10,000 pig farms in four different areas of Jiangsu Province, were selected for treatment . Large-scale trials of lysostaphin on sow vaginitis : 240 cases of vaginitis sows after diagnosis of more than 10,000 pig farms in five different areas of Guangdong Province, and 200 cases of vaginitis sows after diagnosis of more than 10,000 pig farms in five different areas of Jiangsu Province, were randomly divided into 2 groups, of which 220 were administered rLysostaphin VET, while the remaining 220 cases treated by 10% oxytetracycline uterine injection as control.Therefore, analysis of the response to lysostaphin therapy in terms of clinical cure, bacterial clearance and reproductive performance may provide new insights in managing clinical vaginistis in sow.<br>
DOI: 10.6084/m9.figshare.8233955.v2
title: Dataset of Clinical efficacy.pdf

description: Vaginitis sows were diagnosed by the presence of purulent or mucopurulent uterine exudate in the vagina. 100 sows that developed vaginitis within 1 month of delivery, at more than 10,000 pig farms in three different areas of Guangdong Province，were selected for treatment . And 150 sows with vaginitis within 1 month of delivery, at more than 10,000 pig farms in four different areas of Jiangsu Province, were selected for treatment . Large-scale trials of lysostaphin on sow vaginitis : 240 cases of vaginitis sows after diagnosis of more than 10,000 pig farms in five different areas of Guangdong Province, and 200 cases of vaginitis sows after diagnosis of more than 10,000 pig farms in five different areas of Jiangsu Province, were randomly divided into 2 groups, of which 220 were administered rLysostaphin VET, while the remaining 220 cases treated by 10% oxytetracycline uterine injection as control.Therefore, analysis of the response to lysostaphin therapy in terms of clinical cure, bacterial clearance and reproductive performance may provide new insights in managing clinical vaginistis in sow.<br>
DOI: 10.6084/m9.figshare.8233934
title: modeldata.tar

description: Model output: PhyC, POC, nitrate and iron in the tropical Pacific over 1981-2016
DOI: 10.6084/m9.figshare.8233955.v1
title: dataset of Clinical efficacy in farms.pdf

description: In this study, lysostaphin was developed into effervescent tablet, which was vaginally administered and rapidly effervescent in the environment of 37 ° C to 39 ° C. The effervescent tablet contains thickening agent and expanding agent, which can make the drug carried by the foam be in contact with the endometrium for a long time and a large area, to achieve excellent healing effect. In this paper, the clinical efficacy test of recombinant lysostaphin vaginal effervescent tablets(rLysostaphin VET) on sow vaginitis was carried out in combination with South China Agricultural University and Yangzhou University.Therefore, analysis of the response to lysostaphin therapy in terms of clinical cure, bacterial clearance and reproductive performance may provide new insights in managing clinical vaginistis in sow.
DOI: 10.6084/m9.figshare.8233838
title: Supplemental Table

description: Primer sequence
DOI: 10.6084/m9.figshare.8233838.v1
title: Supplemental Table

description: Primer sequence
DOI: 10.6084/m9.figshare.8233760
title: Additional file 1 of Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

description: Lists of unique genes that are present in recovered similar transcripts and differentially expressed genes from libraries associated with one condition versus another condition along with significant GO terms recovered from M. albus and M. siculus when our algorithm is applied to A. thaliana and M. truncatula in the 25_3 assembly. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.8233751
title: Additional file 1: of Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota

description: Table S1. Differentially abundant OTUs in the nasopharyngeal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S2. Differentially abundant OTUs in the fecal and nasopharyngeal microbiota between antibiotic-treated and control cattle at d 5. Table S3. Differentially abundant OTUs in the fecal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S4. Differentially abundant OTUs in the fecal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S5. Differentially abundant OTUs in the fecal microbiota between the oxytetracycline-treated and control cattle. Table S6. Differentially abundant OTUs in the fecal microbiota between the tulathromycin-treated and control cattle. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.8233760.v1
title: Additional file 1 of Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

description: Lists of unique genes that are present in recovered similar transcripts and differentially expressed genes from libraries associated with one condition versus another condition along with significant GO terms recovered from M. albus and M. siculus when our algorithm is applied to A. thaliana and M. truncatula in the 25_3 assembly. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.8233751.v1
title: Additional file 1: of Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota

description: Table S1. Differentially abundant OTUs in the nasopharyngeal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S2. Differentially abundant OTUs in the fecal and nasopharyngeal microbiota between antibiotic-treated and control cattle at d 5. Table S3. Differentially abundant OTUs in the fecal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S4. Differentially abundant OTUs in the fecal microbiota following transport to the feedlot (d minus 5 vs. d 0). Table S5. Differentially abundant OTUs in the fecal microbiota between the oxytetracycline-treated and control cattle. Table S6. Differentially abundant OTUs in the fecal microbiota between the tulathromycin-treated and control cattle. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.8233718
title: sac.LOH1.snps.minqualfiltered.pruned.snpEff_annotated.vcf

description: Variant call format of unfiltered SNP data from Saccharomyces cerevisiae clones evolved for 100 days. This version used for identifying de novo mutations.<br>Supports in prep publication: "High-resolution mapping of loss of heterozygosity in evolved yeast clones under divergent selection"<br>
DOI: 10.6084/m9.figshare.8233715
title: sac.LOH1.snps.only.qualfiltered.pruned.rearranged.vcf

description: Variant call format of filtered SNP data without indels and with effects predicted from SNPeff. Saccharomyces cerevisiae clones evolved for 100 days. <br>Supports in prep publication: "High-resolution mapping of loss of heterozygosity in evolved yeast clones under divergent selection"<br>
DOI: 10.6084/m9.figshare.8233574
title: sac.LOH1.snps.unfiltered.vcf

description: Variant call format of unfiltered SNP data from Saccharomyces cerevisiae clones evolved for 100 days.<br>Supports in prep publication: "High-resolution mapping of loss of heterozygosity in evolved yeast clones under divergent selection"<b></b>
DOI: 10.6084/m9.figshare.8233715.v1
title: sac.LOH1.snps.only.qualfiltered.pruned.rearranged.vcf

description: Variant call format of filtered SNP data without indels and with effects predicted from SNPeff. Saccharomyces cerevisiae clones evolved for 100 days. <br>Supports in prep publication: "High-resolution mapping of loss of heterozygosity in evolved yeast clones under divergent selection"<br>
DOI: 10.6084/m9.figshare.8233418
title: Novel transcript

description: Novel transcript in the transcriptome data
DOI: 10.6084/m9.figshare.8233418.v1
title: Novel transcript

description: Novel transcript in the transcriptome data
DOI: 10.6084/m9.figshare.8233415
title: Alternative splicing

description: Alternative splicing in the transcriptome data
DOI: 10.6084/m9.figshare.8233400
title: ODIN Kellogg dataset - 2019

description: 10 minute averaged (not corrected) data from ODIN units deployed between Janurary and March 2019 in Kellogg (Idaho - USA) as part of NIWA's CONA project.<br>The SAMPLE.png image shows the location of the units.<br>The data is presented as a ZIP compressed CSV file with the following columns<br><br> <b>date</b> PST timestamp with the format YYYY-MM-DDTHH:MM:SSZ <b>PM1</b> Particulate matter smaller than 1μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM2.5</b> Particulate matter smaller than 2.5μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM10</b> Particulate matter smaller than 10μm as reported by the ODIN [μg/m<sup>3</sup>] <b>Temperature</b> Temperature inside the ODIN enclosure [celsius] <b>RH</b> Relative humidity inside the ODIN enclosure [%] <b>ODINsn</b> Serial number of the ODIN (e.g. SD0010) <b>lat</b><br> Latitude coordinate (EPSG:4326) <b>lon</b><br> Longitude coordinate (EPSG:4326)
DOI: 10.6084/m9.figshare.8233403
title: Mutations

description: Indel mutations and SNPs
DOI: 10.6084/m9.figshare.8233400.v1
title: ODIN Kellogg dataset - 2019

description: 10 minute averaged (not corrected) data from ODIN units deployed between Janurary and March 2019 in Kellogg (Idaho - USA) as part of NIWA's CONA project.<br>The SAMPLE.png image shows the location of the units.<br>The data is presented as a ZIP compressed CSV file with the following columns<br><br> <b>date</b> PST timestamp with the format YYYY-MM-DDTHH:MM:SSZ <b>PM1</b> Particulate matter smaller than 1μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM2.5</b> Particulate matter smaller than 2.5μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM10</b> Particulate matter smaller than 10μm as reported by the ODIN [μg/m<sup>3</sup>] <b>Temperature</b> Temperature inside the ODIN enclosure [celsius] <b>RH</b> Relative humidity inside the ODIN enclosure [%] <b>ODINsn</b> Serial number of the ODIN (e.g. SD0010) <b>lat</b><br> Latitude coordinate (EPSG:4326) <b>lon</b><br> Longitude coordinate (EPSG:4326)
DOI: 10.6084/m9.figshare.8233403.v1
title: Mutations

description: Indel mutations and SNPs
DOI: 10.6084/m9.figshare.8233394
title: CONA Alexandra - Phase 2

description: Raw 1 minute data from ODIN units deployed between August and October 2018 in Alexandra (New Zealand) as part of NIWA's CONA project.<br>The data is presented as a ZIP compressed CSV file with the following columns<br><br> <b>date</b> UTC timestamp with the format YYYY-MM-DDTHH:MM:SSZ <b>PM1</b> Particulate matter smaller than 1μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM2.5</b> Particulate matter smaller than 2.5μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM10</b> Particulate matter smaller than 10μm as reported by the ODIN [μg/m<sup>3</sup>] <b>Temperature</b> Temperature inside the ODIN enclosure [celsius] <b>RH</b> Relative humidity inside the ODIN enclosure [%] <b>ODINsn</b> Serial number of the ODIN (e.g. SD0010) <b>y</b> Northing coordinate NZTM (EPSG:2193) <b>x</b> Easting coordinate NZTM (EPSG:2193)
DOI: 10.6084/m9.figshare.8233397
title: Reconnaissance composition of river sand from northern South Island, New Zealand: a modern analogue for southern Taranaki Basin

description: The composition of 20 modern sand samples (18 streams, one beach, and one lakeshore) collected from the northern South Island provide a dataset for assessing detrital signatures of Paleozoic-Mesozoic basement terranes that may have served as sediment sources for reservoir sandstones in the Taranaki Basin. Non-plutonic terranes produce lithic-rich sand dominated by metamorphic fragments. Samples derived from erosion of the Rakaia and Caples terranes are more quartz-rich than the other non-plutonic terrane samples. Sand from the Dun Mountain-Maitai and Brook Street terranes has the lowest quartz content and is further distinguished by detrital serpentine. Pervasive pumpellyite-bearing metamorphic lithic fragments characterise the Caples, Dun Mountain-Maitai and Brook Street terranes. Feldspar is rare in Eastern province terrane sand. Sand from the Median Batholith tends to have less quartz than sand from the Karamea Batholith and a higher percentage of plagioclase, while sand from the Karamea Batholith has a higher proportion of potassium feldspar. Petrographic analyses were compared with published reports describing the composition of offshore sandstone reservoirs to evaluate their likely provenance.
DOI: 10.6084/m9.figshare.8233415.v1
title: Alternative splicing

description: Alternative splicing in the transcriptome data
DOI: 10.6084/m9.figshare.8233394.v1
title: CONA Alexandra - Phase 2

description: Raw 1 minute data from ODIN units deployed between August and October 2018 in Alexandra (New Zealand) as part of NIWA's CONA project.<br>The data is presented as a ZIP compressed CSV file with the following columns<br><br> <b>date</b> UTC timestamp with the format YYYY-MM-DDTHH:MM:SSZ <b>PM1</b> Particulate matter smaller than 1μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM2.5</b> Particulate matter smaller than 2.5μm as reported by the ODIN [μg/m<sup>3</sup>] <b>PM10</b> Particulate matter smaller than 10μm as reported by the ODIN [μg/m<sup>3</sup>] <b>Temperature</b> Temperature inside the ODIN enclosure [celsius] <b>RH</b> Relative humidity inside the ODIN enclosure [%] <b>ODINsn</b> Serial number of the ODIN (e.g. SD0010) <b>y</b> Northing coordinate NZTM (EPSG:2193) <b>x</b> Easting coordinate NZTM (EPSG:2193)
DOI: 10.6084/m9.figshare.8233397.v1
title: Reconnaissance composition of river sand from northern South Island, New Zealand: a modern analogue for southern Taranaki Basin

description: The composition of 20 modern sand samples (18 streams, one beach, and one lakeshore) collected from the northern South Island provide a dataset for assessing detrital signatures of Paleozoic-Mesozoic basement terranes that may have served as sediment sources for reservoir sandstones in the Taranaki Basin. Non-plutonic terranes produce lithic-rich sand dominated by metamorphic fragments. Samples derived from erosion of the Rakaia and Caples terranes are more quartz-rich than the other non-plutonic terrane samples. Sand from the Dun Mountain-Maitai and Brook Street terranes has the lowest quartz content and is further distinguished by detrital serpentine. Pervasive pumpellyite-bearing metamorphic lithic fragments characterise the Caples, Dun Mountain-Maitai and Brook Street terranes. Feldspar is rare in Eastern province terrane sand. Sand from the Median Batholith tends to have less quartz than sand from the Karamea Batholith and a higher percentage of plagioclase, while sand from the Karamea Batholith has a higher proportion of potassium feldspar. Petrographic analyses were compared with published reports describing the composition of offshore sandstone reservoirs to evaluate their likely provenance.
DOI: 10.23641/asha.8233376
title: Test–retest reliability of RFF and voice measures (Park & Stepp, 2019)

description: <b>Purpose: </b>Recent studies have shown that an acoustic measure, relative fundamental frequency (RFF), has potential for the assessment of excessive laryngeal tension and vocal effort associated with functional and neurological voice disorders. This study presents an analysis of the test–retest reliability of RFF in individuals with healthy voices and a comparison of reliability between RFF and conventional measures of voice.<b>Method: </b>Acoustic and aerodynamic measurements and Consensus Auditory–Perceptual Evaluation of Voice (CAPE-V) were performed on 28 individuals with healthy voices on 5 consecutive days. Participants produced RFF stimuli, a sustained /ɑ/, and a reading passage to allow for extraction of acoustic measures and CAPE-V ratings; /pa/ trains were produced to allow for extraction of aerodynamic measures.<b>Results: </b>Moderate reliabilities (intraclass correlation coefficient [ICC] = .64–.71) were found for RFF values. Mean vocal fundamental frequency, smoothed cepstral peak prominence, shimmer, harmonics-to-noise ratio, and mean airflow rate exhibited good-to-excellent reliabilities (ICC = .76–.99). ICCs for jitter and phonation threshold pressure were moderately reliable (ICC = .67–.74). ICCs for subglottal pressure estimates and all CAPE-V parameters showed poor reliabilities (ICC = .31–.58).<b>Conclusion: </b>RFF has comparable reliability to conventional measures of voice. This expands the potential for clinical application of RFF.<br><b>Supplemental Material S1.</b> MATLAB scripts for obtaining mean airflow and subglottic pressure estimates from PAS data.<br>Park, Y., & Stepp, C. E. (2019). Test–retest reliability of relative fundamental frequency and conventional acoustic, aerodynamic, and perceptual measures in individuals with healthy voices. <i>Journal of Speech, Language, and Hearing Research, 62, </i>1707–1718. https://doi.org/10.1044/2019_JSLHR-S-18-0507
DOI: 10.23641/asha.8233376.v1
title: Test–retest reliability of RFF and voice measures (Park & Stepp, 2019)

description: <b>Purpose: </b>Recent studies have shown that an acoustic measure, relative fundamental frequency (RFF), has potential for the assessment of excessive laryngeal tension and vocal effort associated with functional and neurological voice disorders. This study presents an analysis of the test–retest reliability of RFF in individuals with healthy voices and a comparison of reliability between RFF and conventional measures of voice.<b>Method: </b>Acoustic and aerodynamic measurements and Consensus Auditory–Perceptual Evaluation of Voice (CAPE-V) were performed on 28 individuals with healthy voices on 5 consecutive days. Participants produced RFF stimuli, a sustained /ɑ/, and a reading passage to allow for extraction of acoustic measures and CAPE-V ratings; /pa/ trains were produced to allow for extraction of aerodynamic measures.<b>Results: </b>Moderate reliabilities (intraclass correlation coefficient [ICC] = .64–.71) were found for RFF values. Mean vocal fundamental frequency, smoothed cepstral peak prominence, shimmer, harmonics-to-noise ratio, and mean airflow rate exhibited good-to-excellent reliabilities (ICC = .76–.99). ICCs for jitter and phonation threshold pressure were moderately reliable (ICC = .67–.74). ICCs for subglottal pressure estimates and all CAPE-V parameters showed poor reliabilities (ICC = .31–.58).<b>Conclusion: </b>RFF has comparable reliability to conventional measures of voice. This expands the potential for clinical application of RFF.<br><b>Supplemental Material S1.</b> MATLAB scripts for obtaining mean airflow and subglottic pressure estimates from PAS data.<br>Park, Y., & Stepp, C. E. (2019). Test–retest reliability of relative fundamental frequency and conventional acoustic, aerodynamic, and perceptual measures in individuals with healthy voices. <i>Journal of Speech, Language, and Hearing Research, 62, </i>1707–1718. https://doi.org/10.1044/2019_JSLHR-S-18-0507
DOI: 10.6084/m9.figshare.8233337
title: Untitled Item

description: Data on five variables for 26 Brazilian states
DOI: 10.23641/asha.8233334
title: Retrospective study of early characteristics (Overby et al., 2019)

description: <b>Purpose: </b>Studies of infants’ early vocalizations have proven helpful in describing the developmental characteristics of various communication disorders. However, few studies have addressed the early vocalizations of infants and toddlers who were later diagnosed, as older children, with childhood apraxia of speech (CAS). We refer to these infants and toddlers as <i>LCAS</i>. Extant studies also often lack a comparison group of infants and toddlers who were later diagnosed, as older children, with a speech sound disorder (SSD). We refer to these infants and toddlers as <i>LSSD</i>. We aimed to compare the volubility, consonant emergence, and syllabic structure from birth to age of 2 years, as observed in home videos, among 3 groups of infants and toddlers: LCAS, LSSD, and typically developing (TD).<b>Method:</b> We assessed the speech-language skills of 17 children (3.5–8.8 years old; 7 with CAS, 5 with SSD, and 5 TD) and transcribed home videos (obtained from parents) of these same children from birth to age of 2 years. Early vocalizations were coded as nonresonant or resonant. Nonresonant vocalizations could not be transcribed with the International Phonetic Alphabet. Resonant (speechlike) vocalizations were broadly transcribed, and resonant consonants were categorized by place, manner, and voicing.<b>Results:</b> Effect size comparisons revealed LCAS infants and toddlers were less voluble, used fewer resonant consonants, had a less diverse phonetic repertoire, and acquired resonant consonants later than either the LSSD or TD participants. For LSSD infants and toddlers, means for these dependent variables were lower than the means demonstrated by the TD group, but effect size were not strong due to LSSD variability.<b>Conclusions: </b>Findings imply there might be clinical “red flags” that could assist the identification of infants and toddlers at risk for later diagnosis of CAS. Data did not support red flags for identifying infants and toddlers at risk for later diagnosis of SSD. Because of significant study limitations, results obtained should be considered preliminary.<br><b>Supplemental Material S1.</b> Individual phonetic inventories by month from birth to age 24 months for LCAS participants. <br><b>Supplemental Material S2. </b>Individual phonetic inventories by month from birth to age 24 months for LSSD participants. <br><b>Supplemental Material S3.</b> Individual phonetic inventories by month from birth to age 24 months for TD participants. <br>Overby, M. S., Caspari, S. S., & Schreiber, J. (2019). Volubility, consonant emergence, and syllabic structure in infants and toddlers later diagnosed with childhood apraxia of speech, speech sound disorder, and typical development: A retrospective video analysis. <i>Journal of Speech, Language, and Hearing Research, 62, </i>1657–1675. https://doi.org/10.1044/2019_JSLHR-S-18-0046
DOI: 10.6084/m9.figshare.8233337.v1
title: Untitled Item

description: Data on five variables for 26 Brazilian states