cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4959616
title: Building pseudo proxy paleotempestology networks using synthetic North Atlantic tropical cyclones

description: This release contains the past millennium synthetic storm datasets (MPI-ESM; CESM-LME) and scripts needed to develop pseudo paleohurricane compilations used in Wallace et al. (2021).
DOI: 10.5281/zenodo.5007336
title: chCTRWFluidSolid

description: Simulation data produced and used in the paper: -Tomás Aquino and Tanguy Le Borgne, "The chemical continuous time random walk framework for upscaling transport limitations in fluid-solid reactions", Advances in Water Resources (2021), found at 10.1016/j.advwatres.2021.103981. Please refer to the included README.md file for further details.
DOI: 10.5281/zenodo.5007335
title: chCTRWFluidSolid

description: Simulation data produced and used in the paper: -Tomás Aquino and Tanguy Le Borgne, "The chemical continuous time random walk framework for upscaling transport limitations in fluid-solid reactions", Advances in Water Resources (2021), found at 10.1016/j.advwatres.2021.103981. Please refer to the included README.md file for further details.
DOI: 10.6084/m9.figshare.14815857.v1
title: PawelleL_CAD response_ J Chem Inf_Table S1

description: This set is composed of 65 independent variables and 1 dependent variable. The latter is Charged Aerosol Detector (CAD) response of fatty acids (C12-C18), measured under 25 different experimental conditions. The shown values of target variable are the cube-root transformed CAD responses. The independent variables are experimental factors (4 quantitative and 1 qualitative factors) and 61 molecular descriptors. Values of experimental factors were varied according to DoE (Face-Centered Central Composite Design). Molecular descriptors were calculated for optimized structures of given analytes using Dragon 6.0.7. software (Talete srl, Milan, Italy). Descriptors that were strongly correlated to the other descriptors (using a correlation coefficient │r│ &gt; 0.90), descriptors with constant values (RSD &lt; 5%), i.e. descriptors that were not available for all analytes were excluded from the initial pool of descriptors. This datset was developed for mixed Quantitative Structure - Property Relationship (QSPR) modeling. <br>
DOI: 10.6084/m9.figshare.14696499
title: Metadata record for the article: High Prevalence of APOA1/C3/A4/A5 Alterations in Luminal Breast Cancers among Young Women in East Asia

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “High Prevalence of APOA1/C3/A4/A5 Alterations in Luminal Breast Cancers among Young Women in East Asia”. The related study aimed to identify unique genetic alterations in emerging tumours distinctly characterised by a high prevalence of estrogen receptor (ER)–positive/human epidermal growth factor receptor (HER2)–negative cancer, for which the incidence rate among women aged &lt;50 years in East Asia has rapidly increased. Type of data: copy number variations (CNVs); clinical data Subject of data: <i>Homo sapiens</i> Patient characteristics & recruitment: patients with breast cancer diagnosed between April 2009 and July 2011 at National Taiwan University Hospital (NTUH), Taiwan. The clinicopathological information of these patients was obtained from electronic medical record. <b>Data access</b> The CNV dataset of the 120 breast tumours in the NTUH discovery cohort has been deposited in the <i>Gene Expression Omnibus </i>(GEO)<i> </i>under accession https://identifiers.org/geo:GSE80526. The Metabric dataset is available in the <i>European Nucleotide Archive </i>under accession https://identifiers.org/ena.embl:EGAD00010000164. The breast cancer gene expression datasets used for comparison between East Asian and Western women are available in GEO under accessions: https://identifiers.org/geo:GSE20685, https://identifiers.org/geo:GSE21653, https://identifiers.org/geo:GSE23720, https://identifiers.org/geo:GSE20194, https://identifiers.org/geo:GSE45255. Clinical data in the files ‘NTUH discovery cohort patient data.xlsx’ and ‘NTUH validation cohort patient data.xlsx’ are not publicly available as they contain information that could compromise research participant privacy and informed consent to share participant-level data was not obtained prior to or during data collection. Requests for these data should be directed to Dr. Lin CH with data requests. The file ‘TagMan Copy Number Assay data.xlsx’ is openly available with this data record. <b>Corresponding author(s) for this study</b> Chiun-Sheng Huang, National Taiwan University Hospital, No 7, Chung-Shan South Rd, Taipei 10016, Taiwan. Phone: 886223123456 ext. 65080; Fax: 886225238870; Email: huangcs@ntu.edu.tw. Ching-Hung Lin, Department of Oncology, National Taiwan University Hospital, Taipei, Taiwan. chinghlin@ntu.edu.tw.<br> <br> <b></b> <b>Study approval </b> The study’s protocol was approved by the ethics committee of NTUH (200902014R).
DOI: 10.6084/m9.figshare.14696499.v1
title: Metadata record for the article: High Prevalence of APOA1/C3/A4/A5 Alterations in Luminal Breast Cancers among Young Women in East Asia

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “High Prevalence of APOA1/C3/A4/A5 Alterations in Luminal Breast Cancers among Young Women in East Asia”. The related study aimed to identify unique genetic alterations in emerging tumours distinctly characterised by a high prevalence of estrogen receptor (ER)–positive/human epidermal growth factor receptor (HER2)–negative cancer, for which the incidence rate among women aged &lt;50 years in East Asia has rapidly increased. Type of data: copy number variations (CNVs); clinical data Subject of data: <i>Homo sapiens</i> Patient characteristics & recruitment: patients with breast cancer diagnosed between April 2009 and July 2011 at National Taiwan University Hospital (NTUH), Taiwan. The clinicopathological information of these patients was obtained from electronic medical record. <b>Data access</b> The CNV dataset of the 120 breast tumours in the NTUH discovery cohort has been deposited in the <i>Gene Expression Omnibus </i>(GEO)<i> </i>under accession https://identifiers.org/geo:GSE80526. The Metabric dataset is available in the <i>European Nucleotide Archive </i>under accession https://identifiers.org/ena.embl:EGAD00010000164. The breast cancer gene expression datasets used for comparison between East Asian and Western women are available in GEO under accessions: https://identifiers.org/geo:GSE20685, https://identifiers.org/geo:GSE21653, https://identifiers.org/geo:GSE23720, https://identifiers.org/geo:GSE20194, https://identifiers.org/geo:GSE45255. Clinical data in the files ‘NTUH discovery cohort patient data.xlsx’ and ‘NTUH validation cohort patient data.xlsx’ are not publicly available as they contain information that could compromise research participant privacy and informed consent to share participant-level data was not obtained prior to or during data collection. Requests for these data should be directed to Dr. Lin CH with data requests. The file ‘TagMan Copy Number Assay data.xlsx’ is openly available with this data record. <b>Corresponding author(s) for this study</b> Chiun-Sheng Huang, National Taiwan University Hospital, No 7, Chung-Shan South Rd, Taipei 10016, Taiwan. Phone: 886223123456 ext. 65080; Fax: 886225238870; Email: huangcs@ntu.edu.tw. Ching-Hung Lin, Department of Oncology, National Taiwan University Hospital, Taipei, Taiwan. chinghlin@ntu.edu.tw.<br> <br> <b></b> <b>Study approval </b> The study’s protocol was approved by the ethics committee of NTUH (200902014R).
DOI: 10.5281/zenodo.5007134
title: Identify key transcription factors in cell fate determination using ANANSE

description: The example data used in ANANSE protocol.
DOI: 10.6073/pasta/68aade71b6e31756333d5275202b4b58
title: Herbaceous Stratum Sunfleck Regimes in CRUI Land Use Project at Harvard Forest 1998

description: Numerous variables related to land use disturbance and recovery processes can influence forest understory irradiance regimes. In addition to season-long measurements of herbaceous stratum microclimates (data archived separately), we explored the degree to which differences in forest community composition and structure generate differences in near-ground sunfleck regimes in our six land use sites (2 plowed, 2 pastured, 2 permanent woodlot). Considerable research has shown that photosynthetic responses to fluctuating irradiance cannot be predicted accurately from steady-state gas-exchange measurements, and that sunflecks may account for both a large fraction of total daily photon fluence and net carbon assimilation by plants in the herbaceous stratum of moist forests. We measured clear-day irradiance patterns to test predictions about how sunfleck frequency, duration, and brightness should vary across the three land-use legacies. We also wished to document sunfleck regimes as part of a companion study on photosynthetic responses by herb and tree species to sunflecks. Twenty-three quantum sensors (Li-190, Li-Cor, Inc., Lincoln, NE) were placed at regularly-spaced interior intersection points across the 30 m x 50 m permanent plot grid in each land use site. The sensors were mounted on stakes 50 cm above ground, leveled, and attached to a Campbell Scientific CR23X datalogger. Photosynthetic photon flux (PPF) values were recorded at all 23 microsites every 6 seconds for 3.5-4.5 hours in the morning (8:00-11:30+ a.m. EST) on one clear day per site in July and August 1998. Using custom software and a sunfleck definition threshold of 100 umol m-2 s-1, sunfleck events were extracted for each microsite across the sampling period and the following were calculated for each fleck event: number of fleck events per hour, sunfleck duration (sec), duration of the shade period prior to the sunfleck (sec), mean PPF across the sunfleck event, and peak PPF during the sunfleck. Descrtiptive statistics calculated across the 23 sample locations per site are reported in this archived data set.
DOI: 10.5281/zenodo.5007357
title: Simulation data for WRF-GC (v2.0): online two-way coupling of WRF (v3.9.1.1) and GEOS-Chem (v12.7.2) for modeling regional atmospheric chemistry–meteorology interactions

description: This repository provides the test simulation data for "WRF-GC (v2.0): online two-way coupling of WRF (v3.9.1.1) and GEOS-Chem (v12.7.2) for modeling regional atmospheric chemistry–meteorology interactions" published in Geoscientific Model Development. The configurations for sensitivity experiments are described in this paper. Please contact the corresponding author Tzung-May Fu (fuzm@sustech.edu.cn) for more details.
DOI: 10.5281/zenodo.5007356
title: Simulation data for WRF-GC (v2.0): online two-way coupling of WRF (v3.9.1.1) and GEOS-Chem (v12.7.2) for modeling regional atmospheric chemistry–meteorology interactions

description: This repository provides the test simulation data for "WRF-GC (v2.0): online two-way coupling of WRF (v3.9.1.1) and GEOS-Chem (v12.7.2) for modeling regional atmospheric chemistry–meteorology interactions" published in Geoscientific Model Development. The configurations for sensitivity experiments are described in this paper. Please contact the corresponding author Tzung-May Fu (fuzm@sustech.edu.cn) for more details.
DOI: 10.5281/zenodo.5007450
title: Identify key transcription factors in cell fate determination using ANANSE

description: The example data used in ANANSE protocol.
DOI: 10.5281/zenodo.4186163
title: Identify key transcription factors in cell fate determination using ANANSE

description: The example data used in ANANSE protocol.
DOI: 10.6073/pasta/1f377279d01d71221f51af0697243652
title: Tree Seedlings in CRUI Land Use Project at Harvard Forest 1996

description: Forests recovering from agricultural legacies differ in many ways that influence tree seed dispersal and seedling establishment patterns. We recorded the number of seedlings (less than 0.5 m tall) of all tree species on a 1 x 1 m resolution across six land use legacy sites (2 plowed, 2 pastured, 2 permanent woodlot) in summer 1996 to test several predictions about seedling abundance, diversity, and dispersion patterns, and their relationships to forest structure, microclimates, and soil resources.
DOI: 10.21227/7h9g-t664
title: SSCZO PDR

description: Packet delivery ratio data collected for the articleWireless-Sensor Network Topology Optimization in Complex Terrain: A Bayesian Approach.Published in the IEEE Internet of Things Journal.
DOI: 10.6073/pasta/5faaa0987be43fb5fc98d352e08f486a
title: Herbaceous Community Composition in CRUI Land Use Project at Harvard Forest 1996

description: Patterns of vascular plant species richness were investigated in six land use legacy sites (2 formerly plowed, 2 formerly pastured, and 2 permanent woodlot) in Prospect Hill to test predictions about the effects of disturbance, light and soil resources, and forest floor environmental heterogeneity on community composition. The occurrence of vascular taxa was recorded in each of the 60 5 m x 5 m contiguous plots within the 30 m x 50 m permanently gridded study plot in each land use legacy site in June 1996. Identification was made to species in most cases. Woodlots showed higher average species richness at the site level (53) than either pastured (52 species) or plowed (49) sites. However woodlots also show greater spatial variation in richness at the 5 m x 5 m resolution than either the plowed or pastured sites (in that order) as represented by the range, standard deviation, and coefficient of variation. Seasonally-averaged light levels at 50 cm are approximately twice as high in the plowed and pastured sites as in the woodlots, but the woodlots show significantly greater soil organic matter, carbon, nitrogen and water-holding capacity than the post-agricultural sites. These results suggest that soil resources may be more important than light in fostering higher herbaceous stratum richness. However, woodlot richness is also affected by the presence of taxa that are slow to re-colonize heavily disturbed sites (e.g., Epigaea repens) and to distinctive microsites that are less common in the plowed or pastured sites in the Harvard Forest system (e.g., exposed boulders). The greater spatial variation in woodlot richness is strongly influenced by both substrate diversity and by scattered hemlock trees, which substantially depress the herb stratum in localized patches.
DOI: 10.6084/m9.figshare.13517414.v1
title: Triton

description: The triton database
DOI: 10.6073/pasta/902f85d71fade9baca53b87a06bc1fca
title: Soil Properties in CRUI Land Use Project at Harvard Forest 1995-1998

description: Soil properties and processes were evaluated on three types of colonial agricultural land-use - plowing, pasturing, and selective tree removal in a woodlot that ceased in the mid to late 1800s. Plowing, the most intensive type of agricultural disturbance, mixes soil to a depth of approximately 15cm, homogenizing the soil resources and likely reducing diversity in microenvironments. Removing trees and replacing them with grasses for pasture decreases the organic matter amount and types of inputs to the system, decreasing resource diversity. Woodlots, altered by selective and chronic tree removal, would have more limited decreases in resources and microenvironments. This study defines forest soil legacies using data from plots located at Harvard Forest in both amounts of soil resources and spatial heterogeneity of those soil resources. We found that for several soil parameters measured on previously cultivated and preciously pastured lands at the Harvard Forest, a legacy exists in the mineral soil, but the forest floor appears to have largely recovered from the agricultural disturbance. Parameters examined included soil mass, bulk density, organic matter content, pH, C, N, nitrogen mineralization and nitrification, Ca, Mg, K, and P.
DOI: 10.6084/m9.figshare.14816571
title: F2F v Online Teams Data.xlsx

description: F2F/Online Teams<br>
DOI: 10.6084/m9.figshare.14816571.v1
title: F2F v Online Teams Data.xlsx

description: F2F/Online Teams<br>
DOI: 10.5517/ccdc.csd.cc25wk6v
title: CCDC 2022477: Experimental Crystal Structure Determination

description: Related Article: Ning Hu, Yan Hu, Xiao-Feng Zhu|2017|Latin American J.Pharm.|36|192|
DOI: 10.5517/ccdc.csd.cc26xp0v
title: CCDC 2053347: Experimental Crystal Structure Determination

description: Related Article: Ruo-Fei Li, Cheng-Gen Zhu, Cheng-Bo Xu, Qing-Lan Guo, Jian-Gong Shi|2021|J.Asian Nat.Prod.Res.|23|513|doi:10.1080/10286020.2021.1906658
DOI: 10.5517/ccdc.csd.cc26xs1z
title: CCDC 2053441: Experimental Crystal Structure Determination

description: Related Article: Ruo-Fei Li, Cheng-Gen Zhu, Cheng-Bo Xu, Qing-Lan Guo, Jian-Gong Shi|2021|J.Asian Nat.Prod.Res.|23|513|doi:10.1080/10286020.2021.1906658
DOI: 10.5517/ccdc.csd.cc27h610
title: CCDC 2070181: Experimental Crystal Structure Determination

description: Related Article: Bingnan Wang, Zhaobo Liu, Zhenzhong Tong, Beiling Gao, Hanfeng Ding|2021|Angew.Chem.,Int.Ed.|60|14892|doi:10.1002/anie.202104410
DOI: 10.5517/ccdc.csd.cc27h621
title: CCDC 2070182: Experimental Crystal Structure Determination

description: Related Article: Bingnan Wang, Zhaobo Liu, Zhenzhong Tong, Beiling Gao, Hanfeng Ding|2021|Angew.Chem.,Int.Ed.|60|14892|doi:10.1002/anie.202104410
DOI: 10.5517/ccdc.csd.cc27h632
title: CCDC 2070183: Experimental Crystal Structure Determination

description: Related Article: Bingnan Wang, Zhaobo Liu, Zhenzhong Tong, Beiling Gao, Hanfeng Ding|2021|Angew.Chem.,Int.Ed.|60|14892|doi:10.1002/anie.202104410
DOI: 10.15468/vk562n
title: Record of the non-indigenous species Sternaspis aff. nana Zhadan, Tzetlin & Salazar-Vallejo, 2017 (Annelida: Sternaspidae) in the Southwest Atlantic Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Craveiro, Nykon, Filho, José Souto Rosa (2021): Record of the non-indigenous species Sternaspis aff. nana Zhadan, Tzetlin & Salazar-Vallejo, 2017 (Annelida: Sternaspidae) in the Southwest Atlantic Ocean. Papéis Avulsos de Zoologia 61: 1-8, DOI: 10.11606/1807-0205/2021.61.11, URL: http://dx.doi.org/10.11606/1807-0205/2021.61.11
DOI: 10.5281/zenodo.4976801
title: Extract of Local Notice to Mariners, 2018-2019, for Development of AIS Model of Texas Gulf Intracoastal Waterway Travel Times

description: These files summarize mentions of restrictions or cautions for navigation on the Texas Gulf Intracoastal Waterway contained in Coast Guard Local Notice to Mariners files.
DOI: 10.5281/zenodo.4976746
title: Weekly travel times by direction and sample count for each link in Development of AIS Model of Texas Gulf Intracoastal Waterway Travel Times

description: Excel spreadsheet containing all of the travel times and sample counts for each link (by direction).
DOI: 10.5281/zenodo.4976800
title: Extract of Local Notice to Mariners, 2018-2019, for Development of AIS Model of Texas Gulf Intracoastal Waterway Travel Times

description: These files summarize mentions of restrictions or cautions for navigation on the Texas Gulf Intracoastal Waterway contained in Coast Guard Local Notice to Mariners files.
DOI: 10.5281/zenodo.4976745
title: Weekly travel times by direction and sample count for each link in Development of AIS Model of Texas Gulf Intracoastal Waterway Travel Times

description: Excel spreadsheet containing all of the travel times and sample counts for each link (by direction).
DOI: 10.6073/pasta/9af0d6fcbc6b2ec37d3b5201d5518aa4
title: Soil Respiration in CRUI Land Use Project at Harvard Forest 1997

description: Soil properties and processes were evaluated on three types of colonial agricultural land-use - plowing, pasturing, and selective tree removal in a woodlot that ceased in the mid to late 1800s. Plowing, the most intensive type of agricultural disturbance, mixes soil to a depth of approximately 15cm, homogenizing the soil resources and likely reducing diversity in microenvironments. Removing trees and replacing them with grasses for pasture decreases the organic matter amount and types of inputs to the system, decreasing resource diversity. Woodlots, altered by selective and chronic tree removal, would have more limited decreases in resources and microenvironments. This study examined soil surface (at 10cm above the soil surface) CO2 concentrations and soil respiration at the land use sites. Soil respiration and surface CO2 concentrations were highest in the woodlot sites and lowest in the formerly plowed sites.
DOI: 10.6073/pasta/77c0e577a5c809a8efbfb697cda2f3c0
title: Hydrocarbon Concentrations at Harvard Forest EMS Tower 1992-2001

description: Hydrocarbons are products of incomplete combustion and also emitted by vegetation. Hydrocarbons are important precursors for photochemical ozone formation. A system to quantify concentrations of several low-molecular weight hydrocarbons was installed at the EMS tower in the summer of 1992. The measurements were intended to help resolve questions about the potential reactivity in rural New England atmosphere and identify and quantify biogenic hydrocarbon emissions.
DOI: 10.13012/b2idb-8788479_v1
title: Fragmentary Sequences for Variable-Sized RNAsim Datasets

description: Thank you for using these datasets. These RNAsim aligned fragmentary sequences were generated from the query sequences selected by Balaban et al. (2019) in their variable-size datasets (https://doi.org/10.5061/dryad.78nf7dq). They were created for use for phylogenetic placement with the multiple sequence alignments and backbone trees provided by Balaban et al. (2019). The file structures included here also correspond with the data Balaban et al. (2020) provided. This includes: Directories for five varying backbone tree sizes, shown as 5000, 10000, 50000, 100000, and 200000. These directory names are also used by Balaban et al. (2019), and indicate the size of the backbone tree included in their data. Subdirectories for each replicate from the backbone tree size labelled 0 through 4. For the smaller four backbone tree sizes there are five replicates, and for the largest there is one replicate. Each replicate contains 200 text files with one aligned query sequence fragment in fasta format.
DOI: 10.18430/m37k98
title: X-ray diffraction data for the preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS) (7K98)
DOI: 10.5281/zenodo.4031554
title: Effect of superparamagnetic iron oxide nanoparticles on glucose homeostasis on type 2 diabetes experimental model

description: The data correspond to figures in the paper by Ali, L.M.A. et al. Life Sciences 245 (2020) 117361. doi:10.1016/j.lfs.2020.117361.
DOI: 10.5281/zenodo.4031553
title: Effect of superparamagnetic iron oxide nanoparticles on glucose homeostasis on type 2 diabetes experimental model

description: The data correspond to figures in the paper by Ali, L.M.A. et al. Life Sciences 245 (2020) 117361. doi:10.1016/j.lfs.2020.117361.
DOI: 10.6084/m9.figshare.14816643
title: Greenhouse data

description: This is the raw data collected from the four CSTR units.
DOI: 10.6084/m9.figshare.14816643.v2
title: Greenhouse data

description: This is the raw data collected from the four CSTR units.
DOI: 10.6084/m9.figshare.13332245
title: Greenhouse 2016 Data

description: Legume and nodule traits for a greenhouse study conducted in 2016. Plants were grown in CSTR chambers where two had elevated CO2. Some plants also received 5mM of nitrate. Plants were inoculated with two different strains, CE3 and SAM100.
DOI: 10.6084/m9.figshare.13332245.v1
title: Greenhouse 2016 Data

description: Legume and nodule traits for a greenhouse study conducted in 2016. Plants were grown in CSTR chambers where two had elevated CO2. Some plants also received 5mM of nitrate. Plants were inoculated with two different strains, CE3 and SAM100.