cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/rydvw-gtj90
title: COS7 VPS4DN+CHMP4A

description: Cos7 cells co-transfected with VPS4DN and CHMP4A. Sample #C104
description: <strong>Tilt Series Date:</strong> 2012-02-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN and CHMP4A constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-02-04-13/3dimage_68705/</p>12feb04_ATBT1_0014_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
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        12feb04_ATBT1_0014.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
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        12feb04_ATBT1_0014_full.tiff,  file associated to 3D Image #68705, 1.6 MB  
        
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        12feb04_ATBT1_0014_full_vaults.tiff,  file associated to 3D Image #68705, 496.5 kB  
        
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DOI: 10.22002/dv1zr-dj875
title: Agrobacterium tumefaciens

description: Agro C58
description: <strong>Tilt Series Date:</strong> 2013-10-16</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown on solid medium and manually blotted</p>
<strong>Sample Preparation:</strong> Manual blot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-18/rawdata/</p>c58_home_2020008.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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        c58_home_2020008_full.rec,  Reconstruction (Pixel Size 0.0 nm), 623.6 MB  
        
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        slicer000.tif,  2.7 MB  
        
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        slicer001.tif,  2.7 MB  
        
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DOI: 10.15468/dl.xk63yc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setaria sphacelata",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036448-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/wjah1-04t41
title: Agrobacterium C58 25C plate liq

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2014-05-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown at 25 on plates for 2 days then recovered in liquid for 5 h</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-30/rawdata/</p>c58_25_pl_liq0003.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        c58_25_pl_liq0003_full.rec,  Reconstruction (Pixel Size 0.0 nm), 744.8 MB  
        
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        slicer000.tif,  2.7 MB  
        
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        slicer001.tif,  2.7 MB  
        
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DOI: 10.22002/gd6bq-qx214
title: COS7 VPS4DN+CHMP4A

description: Cos7 cells co-transfected with VPS4DN and CHMP4A. Sample #C104
description: <strong>Tilt Series Date:</strong> 2012-02-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN and CHMP4A constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-02-04-12/3dimage_68703/</p>12feb04_ATBT1_0013_part_medflt.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
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        12feb04_ATBT1_0013_part.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
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        12feb04_ATBT1_0013.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
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        12feb04_ATBT1_0013_part.tiff,  file associated to 3D Image #68702, 1.8 MB  
        
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DOI: 10.15468/dl.wuy8s8
title: Occurrence Download

description: A dataset containing 720229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rumex acetosella"
 ]
}

 The dataset includes 720229 records from 3066 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036350-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0434298
title: Data for: The effects of embryonic incubation temperature on subsequent growth and thermal tolerance in white sturgeon throughout onset of exogenous feeding to early juveniles

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;An organism’s phenotypic characteristics can be altered by environmental variation experienced during embryonic development, potentially leading to changes that persist into adulthood. Increasing global temperatures are a current concern that may be particularly acute for species already threatened or endangered, such as the white sturgeon, &lt;em&gt;Acipenser&lt;/em&gt; &lt;em&gt;transmontanus&lt;/em&gt;. Given the limited information on the effects of embryonic temperatures on subsequent physiological parameters such as thermal tolerance and growth in this species, the effects of global climate change on the future of white sturgeon populations are uncertain. To investigate carryover effects resulting from early rearing temperatures, white sturgeon embryos were incubated at different environmental temperatures (T&lt;sub&gt;e&lt;/sub&gt;­) of 12, 15, and 18 °C until hatch, after which fish were reared at a common 15 °C for 80 days post-hatch (dph). Individuals from each temperature treatment were tested for thermal tolerance using the critical thermal maximum method (CT&lt;sub&gt;max&lt;/sub&gt;) at regular intervals from 13 to 80 dph, which bridged the time from the start of exogenous feeding through the transition into early juveniles. In addition, body length measures were taken to determine the effects of embryonic T&lt;sub&gt;e&lt;/sub&gt;­ on growth through these life stages. We found that embryonic T&lt;sub&gt;e&lt;/sub&gt;­ affected both thermal tolerance and growth; fish that developed at 18 °C had the lowest thermal tolerance, while those that developed at 12 °C grew largest over the observation period. This research represents a window into a critical period of development during which organisms are particularly vulnerable to climatic variation. The results can inform environmental managers on the best strategies to help conserve current white sturgeon populations across their range.&lt;/p&gt;
DOI: 10.14288/1.0434299
title: Data for: Superconductivity in twisted double bilayer graphene stabilized by WSe₂

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Identifying the essential components of superconductivity in graphene-based systems remains a critical problem in 2D materials research, connecting this field to the mysteries that underpin investigations of unconventional superconductivity throughout condensed-matter physics. Superconductivity has been previously observed in magic-angle twisted stacks of monolayer graphene but conspicuously not in twisted stacks of bilayer graphene, although both systems host topological flat bands and symmetry-broken states. Here, we report the discovery of superconductivity in twisted double bilayer graphene (TDBG) in proximity to WSe&lt;sub&gt;2&lt;/sub&gt;. Samples with twist angles 1.24 and 1.37 degrees superconduct in small pockets of the gate-tuned phase diagram within the valence and conduction band, respectively. Superconductivity emerges from unpolarized phases near van Hove singularities and next to regions with broken isospin symmetry, showing the correlation between a high density of states and the emergence of superconductivity in TDBG while revealing a possible role for isospin fluctuations in the pairing.&lt;/p&gt;
DOI: 10.14288/1.0443973
title: Data associated with ''Dynamic Soft Tissue Artifacts during Impulsive Loads: Measurement Errors Vary with Wearable Inertial Measurement Unit Sensor Design"''

description: Raw data associated with the study.
DOI: 10.14288/1.0437595
title: Data for Forest Disturbance Thresholds and Cumulative Hydrological Impacts

description: Forest disturbance threshold is defined as a critical disturbance level in forested landscapes above which significant hydrological impacts are detected. Determining disturbance thresholds is critically important for supporting forest management to ensure sustaining of ecological and hydrological functions and services. However, there are very few quantitative evaluations of forest disturbance thresholds regionally or globally. In this study, we applied a well-tested methodology (the modified double mass curve, MDMC) to derive the long-term, continuous hydrological response curves and then to quantify forest disturbance thresholds on annual streamflow in 42 forested watersheds in British Columbia, Canada. The results show that forest disturbance thresholds for significant and cumulative hydrological impacts vary from 7 to 52% of cumulative equivalent clear-cut area (CECA) with an average of 17% or from 8 to 52% of disturbed area with an average of 19%. Climate (inter-annual and intra-annual) and watershed properties exert critical controls on forest disturbance thresholds. Watersheds with greater snowfall proportions, more desynchronizations of energy demand and water supply, less diverse ecosystems, larger watershed sizes, lower water retention capacities, and steeper slopes have lower forest disturbance thresholds. Given the present forest disturbance levels in the central interior of British Columbia, about half (53%) of the forested watersheds have already crossed the average disturbance threshold. These results highlight that the one-threshold-fits-all application and management are inappropriate and watershed characteristics (climate and watershed properties) should be carefully considered to manage water supply and other hydrological functions under increasing forest disturbance and climate change impacts in the region. The methodology can be effectively and robustly extended elsewhere around the globe.
DOI: 10.14288/1.0437552
title: Health Worker Training Materials ~ Smart Triage

description: &lt;br /&gt;&lt;strong&gt;Objective(s):&lt;/strong&gt; The Smart Triage Health Worker Training Program uses a train-the-trainer model to improve the quality of triage care. Core learning components include: 1) understanding what triage is; 2) effective triaging using the Smart Triage platform; and 3) best practices for health workers. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; This dataset includes the following materials for use in the Smart Triage Training Program: 1) Health Workers Guide; 2) Smart Triage Handbook; 3) Caregivers counselling card Materials were originally developed through a partnership with Walimu and the University of British Columbia. All materials are provided in the English language. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Limitations:&lt;/strong&gt; These materials were designed for the Ugandan context and may not be generalizable to other settings. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Ethics Declaration:&lt;/strong&gt; NA &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Funding Source(s):&lt;/strong&gt; BC Children's Hospital Foundation; Grand Challenges Canada; Mining4Life; Wellcome
DOI: 10.14288/1.0437669
title: Quality Improvement Training Materials 2.0 - Smart Triage

description: &lt;br /&gt;&lt;strong&gt;Objective(s):&lt;/strong&gt; The Smart Triage Quality Improvement Training Program covers the basic concepts of the Quality Improvement process and provides a framework and tools that can be used to train staff on QI. Core learning components include: 1) understanding what QI is; 2) the QI model for improvement; and 3) QI methods and tools. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; This dataset includes the following materials for use in the Smart Triage Quality Improvement Training Program: 1) Quality Improvement Guide; 2) QI Activities Workbook. Materials were originally developed through a partnership with Walimu and the University of British Columbia. All materials are provided in the English language. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Limitations:&lt;/strong&gt; These materials were designed for the Ugandan context and may not be generalizable to other settings. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Ethics Declaration:&lt;/strong&gt; NA &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Funding Source(s):&lt;/strong&gt; BC Children's Hospital Foundation; Grand Challenges Canada; Mining4Life; Wellcome
DOI: 10.14288/1.0438041
title: Digital adaptation kit for Smart Triage: operational requirements for implementing Smart Triage recommendations in digital systems

description: &lt;br /&gt;&lt;strong&gt;Objective(s):&lt;/strong&gt; To ensure countries can effectively benefit from digital health investments, digital adaptation kits (DAKs) are designed to facilitate the accurate reflection of clinical, public health and data use guidelines within the digital systems countries are adopting. DAKs are operational, software-neutral, standardized documentation that distill clinical, public health and data use guidance into a format that can be transparently incorporated into digital systems. &lt;br/&gt; &lt;br /&gt;&lt;strong&gt;Objective(s):&lt;/strong&gt; This DAK provides operational requirements for implementing Smart Triage recommendations in digital systems. With a focus on triage care, this DAK aims to provide a common language across various audiences – triage and other programme managers, software developers, and implementers of digital systems – to ensure a common understanding of the appropriate health information content within a defined health programme area, as a mechanism to catalyse the effective use of these digital systems. The key objectives of this DAK are: &lt;ul&gt; &lt;li&gt; to ensure adherence to clinical, public health and data use guidelines, and facilitate consistency of the health content that is used to inform the development of a patient-centred digital tracking and decision-support (DTDS) system; &lt;li&gt; to enable both health programme leads and digital health teams (including software developers) to have a joint understanding of the health content within the digital system, with a transparent mechanism to review the validity and accuracy of the health content; and &lt;li&gt; to provide a starting point of the core data elements and decision-support logic that should be included within DTDS systems for Smart Triage. &lt;/ul&gt; &lt;br /&gt;&lt;strong&gt;Acknowledgements:&lt;/strong&gt; The Institute for Global Health (IGH) is grateful for the contributions of its collaborators. This digital adaptation kit was coordinated by Dustin Dunsmuir, Charly Huxford, Yashodani Pillay, Justine Behan, and Mark Ansermino of IGH; and Fredson Tusingwire and Aine Ivan Aye Ashebukara of the World Alliance for Lung and Intensive Care Medicine in Uganda (WALIMU).
DOI: 10.14288/1.0433090
title: Phylogenomics reveals patterns ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Despite the economic, ecological, and scientific importance of the genera &lt;em&gt;Salix&lt;/em&gt; L. (willows) and &lt;em&gt;Populus&lt;/em&gt; L. (poplars, cottonwoods, and aspens) Salicaceae, we know little about the sources of differences in species diversity between the genera and of the phylogenetic conflict that often confounds estimating phylogenetic trees. &lt;em&gt;Salix&lt;/em&gt; subgenera and sections, in particular, have been difficult to classify, with one recent attempt termed a ‘spectacular failure’ due to a speculated radiation of the subgenera &lt;em&gt;Vetrix&lt;/em&gt; and &lt;em&gt;Chamaetia&lt;/em&gt;. Here we use targeted sequence capture to understand the evolutionary history of this portion of the Salicaceae plant family. Our phylogenetic hypothesis was based on 787 gene regions and identified extensive phylogenetic conflict among genes. Our analysis supported some previously described subgeneric relationships and confirmed polyphyly of others. Using an f&lt;sub&gt;branch&lt;/sub&gt; analysis we identified several cases of hybridization in deep branches of the phylogeny, which likely contributed to discordance among gene trees. In addition, we identified a rapid increase in diversification rate near the origination of the &lt;em&gt;Vetrix&lt;/em&gt;-&lt;em&gt;Chamaetia&lt;/em&gt; clade in &lt;em&gt;Salix&lt;/em&gt;. This region of the tree coincided with several nodes that lacked strong statistical support, indicating a possible increase in incomplete lineage sorting due to rapid diversification. The extraordinary level of both recent and ancient hybridization in both &lt;em&gt;Salix&lt;/em&gt; and &lt;em&gt;Populus&lt;/em&gt; have played important roles in the diversification and diversity in these two genera.&lt;/p&gt;