cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5xk84t82
title: MassIVE Reanalysis RMSV000000590.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088387 Human oocyte proteome and secretome, 100_oocytes_mature_immature files [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5st7f14b
title: MassIVE Reanalysis RMSV000000397.6 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088434 LOPIT-DC subcellular map of U-2 OS cells [BioReplicate: REP3_SET1] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5p26q70h
title: MassIVE Reanalysis RMSV000000370.13 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000082644 Proteomics, post-translational modifications, and integrative analyses reveal heterogeneity of molecular mechanisms within medulloblastoma subgroups [Mixture: Fractionated_Phosphoproteome_Plex02] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5j960d5n
title: MassIVE Reanalysis RMSV000000362.65 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-LysC-Trypsin HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5dj58m01
title: MassIVE Reanalysis RMSV000000362.64 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, ArgC-LysC HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5542jc55
title: MassIVE Reanalysis RMSV000000383.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080854/PXD003811 [2 out of 10] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c58s4js7r
title: MassIVE Reanalysis RMSV000000362.63 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-LysC HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51c1tk2h
title: MassIVE Reanalysis RMSV000000370.14 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000082644 Proteomics, post-translational modifications, and integrative analyses reveal heterogeneity of molecular mechanisms within medulloblastoma subgroups [Mixture: Fractionated_Acetylome_Plex03] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5wm13x7w
title: MassIVE Reanalysis RMSV000000396.14 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080848/PXD002214 [20 out of 21] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5rv0d435
title: MassIVE Reanalysis RMSV000000399.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080692/PXD002516 [9 out of 10] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5n29p98p
title: MassIVE Reanalysis RMSV000000362.67 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Chymotrypsin-Elastase CID [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6365578
title: High spatial resolution Fractional Vegetation Cover maps OAL-DE (Elbe river). Further details can be found in D4.5 of the OPERANDUM project.

description: In order to reduce the risk posed by flooding, areas of woody vegetation have been removed along the riverbank of Elbe river in order to expedite the inflow and outflow of water from the main channel, and thus contribute to flattening the peak hydrographic response. Maintaining the effectiveness of this clearing requires that there is little or no regrowth of this woody vegetation. The NBS that have been implemented in OAL-Germany sees the use of various animals to graze these areas. NBS is devoted to prevent the re-growth of woody vegetation after an intervention which took place over a period from autumn 2014 to February 2015, when woody vegetation along the riverbank was cut back. Monitoring the effectiveness of the NBS is being performed by means of high spatial resolution remotely sensed data , i.e. Rapideye at 5 m spatial resolution. The preliminary analysis of this experiment consisted in the monitoring of the fractional vegetation cover over four of the seven NBS sites. The green fractional abundance (fc) was calculated by an algorithm based on scaling NDVI in-between the maximum and minimum NDVI values. A semi-empirical method based on the use of NDVI was used following Zeng et al, (2000), to calculate fc. The dataset contains layer stack of fractional abundance calculated for the images calculated by Rapideye images acquired on 18 April 2013, 15 April 2015, 17 March 2016, 9 April 2019.
description: Data provided by European Space Agency
DOI: 10.5281/zenodo.6365577
title: High spatial resolution Fractional Vegetation Cover maps OAL-DE (Elbe river). Further details can be found in D4.5 of the OPERANDUM project.

description: In order to reduce the risk posed by flooding, areas of woody vegetation have been removed along the riverbank of Elbe river in order to expedite the inflow and outflow of water from the main channel, and thus contribute to flattening the peak hydrographic response. Maintaining the effectiveness of this clearing requires that there is little or no regrowth of this woody vegetation. The NBS that have been implemented in OAL-Germany sees the use of various animals to graze these areas. NBS is devoted to prevent the re-growth of woody vegetation after an intervention which took place over a period from autumn 2014 to February 2015, when woody vegetation along the riverbank was cut back. Monitoring the effectiveness of the NBS is being performed by means of high spatial resolution remotely sensed data , i.e. Rapideye at 5 m spatial resolution. The preliminary analysis of this experiment consisted in the monitoring of the fractional vegetation cover over four of the seven NBS sites. The green fractional abundance (fc) was calculated by an algorithm based on scaling NDVI in-between the maximum and minimum NDVI values. A semi-empirical method based on the use of NDVI was used following Zeng et al, (2000), to calculate fc. The dataset contains layer stack of fractional abundance calculated for the images calculated by Rapideye images acquired on 18 April 2013, 15 April 2015, 17 March 2016, 9 April 2019.
description: Data provided by European Space Agency
DOI: 10.25345/c5h98zh32
title: MassIVE Reanalysis RMSV000000592.28 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, thyroid Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6365679
title: Area averaged Sentinel 2 vegetation Indices time series on NBS and control sites (Panaro River). Further details can be found in D4.5 of the OPERANDUM project.

description: NBS interventions in OAL-IT (Panaro) aimed at the establishment of a dense deep rooted perennial vegetation on river embankments with the goal to improve the strength of the vadose zone and to reduce erosivity of the soil cover. Monitoring the vegetation cover at the NBS location over time shall provide information about vegetation growth and structure past the completion of the intervention and could give useful insights on the status and effectiveness of the NBS. Dataset includes area averaged Vegetation Indices calculated by a time series of Sentinel-2 multispectral data (10-20 m spatial resolution). Normalized Difference Vegetation Index, Inverted Red-Edge Chlorophyll Index and Red Position Index were calculated for the cloud free images available in the time period between January 2019 and December 2021 providing a total of 71 images covering the NBS site and a control site close to it. The analysis was focused on the evaluation of the temporal profile of Vegetation Indices that can provide metrics of the vigor and health of the vegetation in both the NSB and the standard vegetation (control area).
DOI: 10.5281/zenodo.6365678
title: Area averaged Sentinel 2 vegetation Indices time series on NBS and control sites (Panaro River). Further details can be found in D4.5 of the OPERANDUM project.

description: NBS interventions in OAL-IT (Panaro) aimed at the establishment of a dense deep rooted perennial vegetation on river embankments with the goal to improve the strength of the vadose zone and to reduce erosivity of the soil cover. Monitoring the vegetation cover at the NBS location over time shall provide information about vegetation growth and structure past the completion of the intervention and could give useful insights on the status and effectiveness of the NBS. Dataset includes area averaged Vegetation Indices calculated by a time series of Sentinel-2 multispectral data (10-20 m spatial resolution). Normalized Difference Vegetation Index, Inverted Red-Edge Chlorophyll Index and Red Position Index were calculated for the cloud free images available in the time period between January 2019 and December 2021 providing a total of 71 images covering the NBS site and a control site close to it. The analysis was focused on the evaluation of the temporal profile of Vegetation Indices that can provide metrics of the vigor and health of the vegetation in both the NSB and the standard vegetation (control area).
DOI: 10.25345/c5cj87q0s
title: MassIVE Reanalysis RMSV000000388.17 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080701/PXD000612 [11 out of 27] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57w6789r
title: MassIVE Reanalysis RMSV000000362.66 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Elastase CID [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5445hg6d
title: MassIVE Reanalysis RMSV000000366.41 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086387 A Quantitative Proteome Map of the Human Body, TMT10 MS3 [Mixture: 22] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c50c4sp28
title: MassIVE Reanalysis RMSV000000507.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080778/PXD003530 [1 out of 2] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5vm4316k
title: MassIVE Reanalysis RMSV000000592.29 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, salivary_gland Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5qv3c71z
title: MassIVE Reanalysis RMSV000000391.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080858/PXD003550 [7 out of 7] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5m32nd61
title: MassIVE Reanalysis RMSV000000534.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080760/PXD001847 [1 out of 3] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5gb1xm3c
title: MassIVE Reanalysis RMSV000000382.40 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080596/PXD004242 [49 out of 51] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5bn9x64c
title: MassIVE Reanalysis RMSV000000446.7 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080839/PXD004981 [4 out of 11] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5519/qd.bxpj389z
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.25345/c56w96d13
title: MassIVE Reanalysis RMSV000000398.13 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086899 SubCellBarcode Scalable proteome-wide mapping of protein localization and relocalization [BioReplicate: MVYB_Subcell_20170120_TotalLysate_IPG37-49_QE-70min_7of15ul] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.