cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14744436
title: Single Cell RNAseq DGE tables for Fetal and Postnatal Dataset from Smith et al, 2021. PNAS

description: To gain cell-biological insights into the spatiotemporal dynamics of prenatal <em>ATP1A3</em> expression, we established a transcriptional atlas of <em>ATP1A3</em> expression during cortical development using mRNA <em>in situ</em> hybridization and transcriptomic profiling of ~125,000 individual cells with single-cell RNA sequencing (Drop-Seq) from various areas of the midgestational human neocortex. We find that fetal expression of <em>ATP1A3</em> is restricted to a subset of excitatory neurons carrying transcriptional signatures of neuronal activity and maturation characteristic of the developing subplate. Furthermore, by performing Drop-Seq on ~52,000 nuclei from four different areas of an infant human neocortex, we show that <em>ATP1A3</em> expression persists throughout early postnatal development, not only within excitatory neurons across all cortical layers, but also and more predominantly in inhibitory neurons, with specific enrichment in fast-spiking basket cells. In addition, we show that <em>ATP1A3</em> expression, both in fetal and postnatal neurons, tends to be higher in frontal cortical areas than in occipital areas, in a pattern consistent with the rostro-caudal maturation gradient of the human neocortex.
DOI: 10.6084/m9.figshare.14744436.v1
title: Single Cell RNAseq DGE tables for Fetal and Postnatal Dataset from Smith et al, 2021. PNAS

description: To gain cell-biological insights into the spatiotemporal dynamics of prenatal <em>ATP1A3</em> expression, we established a transcriptional atlas of <em>ATP1A3</em> expression during cortical development using mRNA <em>in situ</em> hybridization and transcriptomic profiling of ~125,000 individual cells with single-cell RNA sequencing (Drop-Seq) from various areas of the midgestational human neocortex. We find that fetal expression of <em>ATP1A3</em> is restricted to a subset of excitatory neurons carrying transcriptional signatures of neuronal activity and maturation characteristic of the developing subplate. Furthermore, by performing Drop-Seq on ~52,000 nuclei from four different areas of an infant human neocortex, we show that <em>ATP1A3</em> expression persists throughout early postnatal development, not only within excitatory neurons across all cortical layers, but also and more predominantly in inhibitory neurons, with specific enrichment in fast-spiking basket cells. In addition, we show that <em>ATP1A3</em> expression, both in fetal and postnatal neurons, tends to be higher in frontal cortical areas than in occipital areas, in a pattern consistent with the rostro-caudal maturation gradient of the human neocortex.
DOI: 10.5281/zenodo.5129267
title: Field Data associated with study: Investigating the water movements around a shallow shipwreck in Big Tub Harbour of Lake Huron: implications for managing underwater shipwrecks.

description: Field data (Water temperature, pressure, currents, summary of boat presence data) used in analysis of the study (and paper with the same name) titled: Investigating the water movements around a shallow shipwreck in Big Tub Harbour of Lake Huron: implications for managing underwater shipwrecks.
DOI: 10.5281/zenodo.5129266
title: Field Data associated with study: Investigating the water movements around a shallow shipwreck in Big Tub Harbour of Lake Huron: implications for managing underwater shipwrecks.

description: Field data (Water temperature, pressure, currents, summary of boat presence data) used in analysis of the study (and paper with the same name) titled: Investigating the water movements around a shallow shipwreck in Big Tub Harbour of Lake Huron: implications for managing underwater shipwrecks.
DOI: 10.3886/e100915v5-92704
title: Philanthropy, 2001-2011

description: Cleaned cross-sections of family-level data on philanthropic giving and volunteering collected by the Panel Study of Income Dynamics and a few important demographics and characteristics of families (e.g., income, wealth, etc.). Prepared by researchers at the IU Lilly Family School of Philanthropy.<br>
DOI: 10.25345/c52831
title: MassIVE MSV000087882 - GNPS - Isolation and Identification of Aryl Hydrocarbon Receptor Modulators in White Button Mushrooms (Agaricus bisporus)
title: Paper title: Isolation and Identification of Aryl Hydrocarbon Receptor Modulators in White Button Mushrooms (Agaricus bisporus). Author List: Yuan Tian, Wei Gui, Philip B. Smith, Imhoi Koo, Iain A. Murray, Margherita T. Cantorna, Gary H. Perdew, and Andrew D. Patterson Citation: J. Agric. Food Chem. 2019, 67, 33, doi.org/10.1021/acs.jafc.9b03212 PubMedID: 31339733 Brief description of the data submitted: RAW Files used to generate five standrads and one real mushroom sample.
DOI: 10.5281/zenodo.5137885
title: DFT data

description: Files from the DFT calculations for the paper 'Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production'.
DOI: 10.5281/zenodo.5137884
title: DFT data

description: Files from the DFT calculations for the paper 'Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production'.
DOI: 10.5281/zenodo.5138066
title: Dataset

description: Hybrid VPIC data used to prepare figures. Includes python script to read sample simulation output.
DOI: 10.5281/zenodo.5138065
title: Dataset

description: Hybrid VPIC data used to prepare figures. Includes python script to read sample simulation output.
DOI: 10.5281/zenodo.5138028
title: Dataset MTrill project

description: This dataset includes data collected from 30 human subjects (anonymised) taking part in a syntactic priming experiment. All speakers of Brazilian Portuguese who were exposed to sentences with a relation of possession between nouns in Portuguese (e.g. A porta do quarto esta fechada) and were asked to freely translate them into English. We called this phase as "baseline phase" (Column "test" level Baseline). Following this phase, participants were requested to translate other sentences with the same structure using Google Translate, read the output of Google Translate out loud and, immediately after reading the output, participants were requested to describe images in English using words appearing on the screen of the computer- We called this phase as "priming" phase. (Column "test" level priming). All the sentences presented to participants could have been translated by them or by Google using a prepositional noun phrase (PNP) (e.g. the door of the room is open) or as a noun phrase (NP) (e.g. the room door is open) If participants used the same structure seen in the output of Google Translate (always noun phrase structure) when describing the images, then we considered participants were primed (column "prime" level "1") otherwise not primed (column "prime" level "0"). Column named "cumulativity" contains the proportion of noun phrase sentences out of the total sentences produced on the target trials before the current trial. Column named "EnglishTestGrade" contains participants' grades to an English Online Test The grades reflect participants' English proficiency level. Column named "structures" contain the structure of the sentences produced at the target trials (PNP or other and NP structures) OTHER FILES UPLOADED: 1) Files used to run the experiment on Psychopy software (MTrill.psyexp_version2.psyexp copy and images_prime_target_version2 copy.xlsx) 2) The 78 images and sentences used in the Priming phase: 60 items used in the trials of interest and 18 items used as filler trials 3) The 26 images and sentences used in the baseline phase (pre-test phase): 20 items used in the trials of interest and 6 items used as filler trials 4) All sentences used to test Google Translation before running the experiments (translated_sentences_experiment_MTrill.xlsx) 5) Files with sentences used to text Google Translate prior choosing the sentences used in the experiment (stimuli_noun_phrase.docx and Noun_phrases_2.docx)
description: {"references": ["RESENDE, N. C. A.; COWAN, B; WAY, A. MT priming effects on L2 English Learners. In. Proceedings of the 22nd annual conference of the European Association for Machine Translation. p. 245-253 3-5 November, 2020, Lisbon, Portugal.", "RESENDE, N. C. A; WAY, A. MTrill project: Machine Translation Impact on Language Learning. In. Proceedings of the 22nd annual conference of the European Association for Machine Translation. p. 497-498, 3-5 November, 2020, Lisbon, Portugal."]}
DOI: 10.5281/zenodo.5085870
title: Dataset MTrill project

description: This dataset includes data collected from 30 human subjects (anonymised) taking part in a syntactic priming experiment. All speakers of Brazilian Portuguese who were exposed to sentences with a relation of possession between nouns in Portuguese (e.g. A porta do quarto esta fechada) and were asked to freely translate them into English. We called this phase as "baseline phase" (Column "test" level Baseline). Following this phase, participants were requested to translate other sentences with the same structure using Google Translate, read the output of Google Translate out loud and, immediately after reading the output, participants were requested to describe images in English using words appearing on the screen of the computer- We called this phase as "priming" phase. (Column "test" level priming). All the sentences presented to participants could have been translated by them or by Google using a prepositional noun phrase (PNP) (e.g. the door of the room is open) or as a noun phrase (NP) (e.g. the room door is open) If participants used the same structure seen in the output of Google Translate (always noun phrase structure) when describing the images, then we considered participants were primed (column "prime" level "1") otherwise not primed (column "prime" level "0"). Column named "cumulativity" contains the proportion of noun phrase sentences out of the total sentences produced on the target trials before the current trial. Column named "EnglishTestGrade" contains participants' grades to an English Online Test The grades reflect participants' English proficiency level. Column named "structures" contain the structure of the sentences produced at the target trials (PNP or other and NP structures) OTHER FILES UPLOADED: 1) Files used to run the experiment on Psychopy software (MTrill.psyexp_version2.psyexp copy and images_prime_target_version2 copy.xlsx) 2) The 78 images and sentences used in the Priming phase: 60 items used in the trials of interest and 18 items used as filler trials 3) The 26 images and sentences used in the baseline phase (pre-test phase): 20 items used in the trials of interest and 6 items used as filler trials 4) All sentences used to test Google Translation before running the experiments (translated_sentences_experiment_MTrill.xlsx) 5) Files with sentences used to text Google Translate prior choosing the sentences used in the experiment (stimuli_noun_phrase.docx and Noun_phrases_2.docx)
description: {"references": ["RESENDE, N. C. A.; COWAN, B; WAY, A. MT priming effects on L2 English Learners. In. Proceedings of the 22nd annual conference of the European Association for Machine Translation. p. 245-253 3-5 November, 2020, Lisbon, Portugal.", "RESENDE, N. C. A; WAY, A. MTrill project: Machine Translation Impact on Language Learning. In. Proceedings of the 22nd annual conference of the European Association for Machine Translation. p. 497-498, 3-5 November, 2020, Lisbon, Portugal."]}
DOI: 10.5517/ccr8nl7
title: CCDC 693519: Experimental Crystal Structure Determination

description: Related Article: Guang-Bo Che, Mao-Liang Xu, Chun-Bo Liu, Qing-Wei Wang, Zhan-Lin Xu|2008|Jiegou Huaxue|27|773|
DOI: 10.15468/2kg7w4
title: Two new species of the banjo catfish Bunocephalus Kner (Siluriformes: Aspredinidae) from the upper and middle rio São Francisco basins, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carvalho, Tiago P., Cardoso, Alexandre R., Friel, John P., Reis, Roberto E. (2015): Two new species of the banjo catfish Bunocephalus Kner (Siluriformes: Aspredinidae) from the upper and middle rio São Francisco basins, Brazil. Neotropical Ichthyology (Neotrop. Ichthyol.) 13 (3): 499-512, DOI: 10.1590/1982-0224-20140152, URL: http://dx.doi.org/10.1590/1982-0224-20140152
DOI: 10.5517/ccdc.csd.cc27n1ml
title: CCDC 2074849: Experimental Crystal Structure Determination

description: Related Article: Mingyuan Lei, Fayuan Ge, Xiangjing Gao, Zhiqiang Shi, Hegen Zheng|2021|Inorg.Chem.|60|10513|doi:10.1021/acs.inorgchem.1c01145
DOI: 10.5517/ccdc.csd.cc27n1nm
title: CCDC 2074850: Experimental Crystal Structure Determination

description: Related Article: Mingyuan Lei, Fayuan Ge, Xiangjing Gao, Zhiqiang Shi, Hegen Zheng|2021|Inorg.Chem.|60|10513|doi:10.1021/acs.inorgchem.1c01145
DOI: 10.15468/8f7utv
title: A new species of the lowland Oligosarcus Günther species group (Teleostei: Ostariophysi: Characidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Menezes, Naércio Aquino, Ribeiro, Alexandre Cunha (2015): A new species of the lowland Oligosarcus Günther species group (Teleostei: Ostariophysi: Characidae). Neotropical Ichthyology (Neotrop. Ichthyol.) 13 (3): 541-546, DOI: 10.1590/1982-0224-20150083, URL: http://dx.doi.org/10.1590/1982-0224-20150083
DOI: 10.25390/caryinstitute.13022603
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT MISCELLANEOUS

description: This repository contains miscellaneous reports, notes and documents that are part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW.
DOI: 10.25390/caryinstitute.13022564
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT DATA SUMMARIES

description: This repository contains summaries of 58 of the 75-80 Cary Forest Plots surveyed in 1984 as part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW
DOI: 10.25390/caryinstitute.13022600
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT TREE RING DATA

description: This repository contains data and documents related to tree ring analyses done as part of the Cary Forest Plot study of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW
DOI: 10.25390/caryinstitute.13022603.v1
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT MISCELLANEOUS

description: This repository contains miscellaneous reports, notes and documents that are part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW.
DOI: 10.25390/caryinstitute.13022564.v1
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT DATA SUMMARIES

description: This repository contains summaries of 58 of the 75-80 Cary Forest Plots surveyed in 1984 as part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW
DOI: 10.25390/caryinstitute.13022549
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT SOIL CHEMISTRY & TEXTURE

description: This repository contains data and documents that describe protocols and data from soil chemistry and particle size analyses. The data are part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW.
DOI: 10.25390/caryinstitute.13022600.v1
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT TREE RING DATA

description: This repository contains data and documents related to tree ring analyses done as part of the Cary Forest Plot study of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW
DOI: 10.25390/caryinstitute.13022618
title: Cary Vegetation Study 1984 1985 OVERVIEW

description: The Cary Vegetation Study was a project established in the early 1980's by Charlie Canham, Mark McDonnell, Steward Pickett and others to describe the vegetation of the Cary Arboretum.The objectives of the project were described in the document titled: "RESEARCH PROPOSAL: The Vegetation of the Cary Arboretum" The proposed research has 4 principal objectives:(1) To quantify the variation in composition and structure of forest, field and wetland plant communities within the Cary Arboretum, including an ordination of the forest communities to identify major plant community types.(2) To examine the relationships between the vegetation of the Cary Arboretum and environmental and historical factors.(3) To provide an extensive data-base of information on the vegetation of the Cary Arboretum, keyed to the standard grid system.(4) To provide a network of sample sites that can be combined with existing vegetation maps, to provide an updated vegetation map based on the results of the analyses described in (1) and ( 2 ) above.<br>The project was subdivided into three subprojects:1. A survey of upland fields2. A survey of forests, which established the permanent plots referred to as the "Cary Forest Plots"3. A land use history, which included interviews with people who remembered land use at the time that Mary Flagler Cary purchased the property<br>The Cary Vegetation Study of 1984 & 1985 contains 7 data repositories:1. Cary Vegetation Study 1984 1985 OVERVIEW2. Cary Vegetation Study 1984 1985 CARY FOREST PLOT MISCELLANEOUS3. Cary Vegetation Study 1984 1985 CARY FOREST PLOT TREE RING DATA4. Cary Vegetation Study 1984 1985 CARY FOREST PLOT DATA SUMMARIES5. Cary Vegetation Study 1984 1985 CARY FOREST PLOT SOIL CHEMISTRY & TEXTURE6. Cary Vegetation Study 1984 1985 UPLAND FIELDS STUDY7. Cary Vegetation Study 1984 1985 LAND USE HISTORY<br>The following publication was a culmination of the data collected in the 1980's:GLITZENSTEIN, J. S., C. D. CANHAM, M. J. MCDONNELL, AND D. R. STRENG. 1990. Effects of environment and land-use history on upland forests of the Cary Arboretum, Hudson Valley, New York. Bull. Torrey Bot. Club 117: 106–122.<br>The Cary Forest Plots were resurveyed in 2006 and results were published in:Katz, D.S.W., Lovett, G.M., Canham, C.D., & O'Reilly, C.M. 2010. Legacies of land use history diminish over 22 years in a forest in southeastern New York. Bull. Torrey Bot. Soc. 137: 236–251.<br><br>
DOI: 10.25390/caryinstitute.13022549.v1
title: Cary Vegetation Study 1984 1985 CARY FOREST PLOT SOIL CHEMISTRY & TEXTURE

description: This repository contains data and documents that describe protocols and data from soil chemistry and particle size analyses. The data are part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW.
DOI: 10.25390/caryinstitute.13022618.v1
title: Cary Vegetation Study 1984 1985 OVERVIEW

description: The Cary Vegetation Study was a project established in the early 1980's by Charlie Canham, Mark McDonnell, Steward Pickett and others to describe the vegetation of the Cary Arboretum.The objectives of the project were described in the document titled: "RESEARCH PROPOSAL: The Vegetation of the Cary Arboretum" The proposed research has 4 principal objectives:(1) To quantify the variation in composition and structure of forest, field and wetland plant communities within the Cary Arboretum, including an ordination of the forest communities to identify major plant community types.(2) To examine the relationships between the vegetation of the Cary Arboretum and environmental and historical factors.(3) To provide an extensive data-base of information on the vegetation of the Cary Arboretum, keyed to the standard grid system.(4) To provide a network of sample sites that can be combined with existing vegetation maps, to provide an updated vegetation map based on the results of the analyses described in (1) and ( 2 ) above.<br>The project was subdivided into three subprojects:1. A survey of upland fields2. A survey of forests, which established the permanent plots referred to as the "Cary Forest Plots"3. A land use history, which included interviews with people who remembered land use at the time that Mary Flagler Cary purchased the property<br>The Cary Vegetation Study of 1984 & 1985 contains 7 data repositories:1. Cary Vegetation Study 1984 1985 OVERVIEW2. Cary Vegetation Study 1984 1985 CARY FOREST PLOT MISCELLANEOUS3. Cary Vegetation Study 1984 1985 CARY FOREST PLOT TREE RING DATA4. Cary Vegetation Study 1984 1985 CARY FOREST PLOT DATA SUMMARIES5. Cary Vegetation Study 1984 1985 CARY FOREST PLOT SOIL CHEMISTRY & TEXTURE6. Cary Vegetation Study 1984 1985 UPLAND FIELDS STUDY7. Cary Vegetation Study 1984 1985 LAND USE HISTORY<br>The following publication was a culmination of the data collected in the 1980's:GLITZENSTEIN, J. S., C. D. CANHAM, M. J. MCDONNELL, AND D. R. STRENG. 1990. Effects of environment and land-use history on upland forests of the Cary Arboretum, Hudson Valley, New York. Bull. Torrey Bot. Club 117: 106–122.<br>The Cary Forest Plots were resurveyed in 2006 and results were published in:Katz, D.S.W., Lovett, G.M., Canham, C.D., & O'Reilly, C.M. 2010. Legacies of land use history diminish over 22 years in a forest in southeastern New York. Bull. Torrey Bot. Soc. 137: 236–251.<br><br>
DOI: 10.25390/caryinstitute.13022486
title: Cary Vegetation Study 1984 1985 LAND USE HISTORY

description: This repository contains notes related to a land use history conducted by Dave Ellsworth that was part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW
DOI: 10.18739/a2r20rx59
title: Updated Meteorological, Radiation, and Soil Temperature Data, Kuparuk River and Nearby Watersheds: Franklin Bluffs (FB) station, 1985-2018.

description: The data files in this data set contain climate information from sites on the North Slope of Alaska in or near the Kuparuk River basin. The data was collected for a hydrologic study of rivers in the North Slope region between 1985-present. Hydro-meteorological stations were established at various locations throughout the Kuparuk, but also in the Putuligayuk and Sagavanirktok watersheds. The variables collected at most stations were air temperature, humidity, wind speed and direction, soil temperature, snow temperature, precipitation, snow depth, and radiation. The Franklin Bluffs (FB) station is located near the boundary of the Sagavanirktok and Putuligayuk basins on the Coastal Plain and operated from 1986-present. This dataset contains all data collected through 2018. IMPORTANT NOTE: Updates and corrections were made to the original datasets by the investigators, and all of the previously published data files should be replaced with this updated dataset. The following corrections were made to the datasets originally published in 2008 and 2010 (data collected 1985-2008): 1) data from annual .csv files were merged into one .csv file (for each station) containing all years of data, 2) appended new data collected from 2008 to 2018 into the .csv file 3) standardized file headers, 4) standardized variable names, units, and sensor installation height above ground surface 5) reviewed all data for quality assurance and added qualifiers to erroneous data, 6) added a data qualifier to wind data during periods of extensive riming on wind sensors, 7) added a qualifier when air temperatures are below -39 degrees Celsius (C) (minimum reporting temperature of some air temperature sensors), and 8) removed duplicative data and fixed timestamp issues. See https://arcticdata.io/catalog/view/urn%3Auuid%3Ad5fa4cfa-b84b-4970-926a-8dd10b418e6d for additional climate data from other nearby stations in the project.
DOI: 10.6084/m9.figshare.15052335.v1
title: Tau calculations-Figure S4

description: DLMO measured at the start and end of FD paradigm
DOI: 10.6084/m9.figshare.15052335
title: Tau calculations-Figure S4

description: DLMO measured at the start and end of FD paradigm