cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10816301
title: LD information used in MUSSEL for EUR, AFR, AMR, EAS, and SAS

description: Estimated LD block matrices and other LD information used in MUSSEL for EUR, AFR, AMR, EAS, and SAS for approximately 2.0 million SNPs in HapMap 3 plus MEGA. Given the limited storage space on Zenodo, we have deposited the LD information generated based on 1000 Genomes LD reference panel and provided the link to download the LD files below using:

(1) 1000 Genomes LD reference panel:

EUR: https://www.dropbox.com/s/wvxh4yqthm8m7uf/EUR.zip?dl=0 (~6.73G, unzip by: tar -zxvf EUR.tar.gz) 

AFR: https://www.dropbox.com/s/iwqg65uieevfzj2/AFR.zip?dl=0 (~7.69G, unzip by: tar -zxvf AFR.tar.gz)

AMR: https://www.dropbox.com/s/mev5zyf4x6m076q/AMR.zip?dl=0 (~8.80G, unzip by: tar -zxvf AMR.tar.gz)

EAS: https://www.dropbox.com/s/o28mlovtakv5n7v/EAS.zip?dl=0 (~5.63G, unzip by: tar -zxvf EAS.tar.gz)

SAS: https://www.dropbox.com/s/idp02rgl8xv379b/SAS.zip?dl=0 (~2.60G, unzip by: tar -zxvf SAS.tar.gz)

 

(2) UK Biobank reference panel:

EUR: https://www.dropbox.com/scl/fi/09yd12dest1tqxkt8p8ch/EUR.zip?rlkey=774vb1e5d6hfnyucilx160cyo&dl=0 (~13.15G, unzip by: tar -zxvf EUR.tar.gz) 

AFR: https://www.dropbox.com/scl/fi/jfymih83anr2vuevmfqok/AFR.zip?rlkey=r1lxpn1fnbk98ssf8f8ji4xkk&dl=0 (~11.59G, unzip by: tar -zxvf AFR.tar.gz)

AMR: https://www.dropbox.com/s/2ba4tsbhz03rg83/AMR.zip?dl=0 (~4.88G, unzip by: tar -zxvf AMR.tar.gz)

EAS: https://www.dropbox.com/s/uofu788707dp4xv/EAS.zip?dl=0 (~4.27G, unzip by: tar -zxvf EAS.tar.gz)

SAS: https://www.dropbox.com/scl/fi/o635c86ylthbl3omfetbu/SAS.zip?rlkey=ot396toxl0phaiae15cnpbeyn&dl=0 (~11.44G, unzip by: tar -zxvf SAS.tar.gz)
DOI: 10.5281/zenodo.10816300
title: LD information used in MUSSEL for EUR, AFR, AMR, EAS, and SAS

description: Estimated LD block matrices and other LD information used in MUSSEL for EUR, AFR, AMR, EAS, and SAS for approximately 2.0 million SNPs in HapMap 3 plus MEGA. Given the limited storage space on Zenodo, we have deposited the LD information generated based on 1000 Genomes LD reference panel and provided the link to download the LD files below using:

(1) 1000 Genomes LD reference panel:

EUR: https://www.dropbox.com/s/wvxh4yqthm8m7uf/EUR.zip?dl=0 (~6.73G, unzip by: tar -zxvf EUR.tar.gz) 

AFR: https://www.dropbox.com/s/iwqg65uieevfzj2/AFR.zip?dl=0 (~7.69G, unzip by: tar -zxvf AFR.tar.gz)

AMR: https://www.dropbox.com/s/mev5zyf4x6m076q/AMR.zip?dl=0 (~8.80G, unzip by: tar -zxvf AMR.tar.gz)

EAS: https://www.dropbox.com/s/o28mlovtakv5n7v/EAS.zip?dl=0 (~5.63G, unzip by: tar -zxvf EAS.tar.gz)

SAS: https://www.dropbox.com/s/idp02rgl8xv379b/SAS.zip?dl=0 (~2.60G, unzip by: tar -zxvf SAS.tar.gz)

 

(2) UK Biobank reference panel:

EUR: https://www.dropbox.com/scl/fi/09yd12dest1tqxkt8p8ch/EUR.zip?rlkey=774vb1e5d6hfnyucilx160cyo&dl=0 (~13.15G, unzip by: tar -zxvf EUR.tar.gz) 

AFR: https://www.dropbox.com/scl/fi/jfymih83anr2vuevmfqok/AFR.zip?rlkey=r1lxpn1fnbk98ssf8f8ji4xkk&dl=0 (~11.59G, unzip by: tar -zxvf AFR.tar.gz)

AMR: https://www.dropbox.com/s/2ba4tsbhz03rg83/AMR.zip?dl=0 (~4.88G, unzip by: tar -zxvf AMR.tar.gz)

EAS: https://www.dropbox.com/s/uofu788707dp4xv/EAS.zip?dl=0 (~4.27G, unzip by: tar -zxvf EAS.tar.gz)

SAS: https://www.dropbox.com/scl/fi/o635c86ylthbl3omfetbu/SAS.zip?rlkey=ot396toxl0phaiae15cnpbeyn&dl=0 (~11.44G, unzip by: tar -zxvf SAS.tar.gz)
DOI: 10.5281/zenodo.10816826
title: Test-bed PV system performance data

description: The data is generated from the on-site data acquisition devices installed at the outdoor testing facilities of the Smart Energy Infrastructure | PHAETHON CoE.
DOI: 10.5281/zenodo.10816825
title: Test-bed PV system performance data

description: The data is generated from the on-site data acquisition devices installed at the outdoor testing facilities of the Smart Energy Infrastructure | PHAETHON CoE.
DOI: 10.5281/zenodo.10816694
title: Supplementary Material for the Paper: "Mining Architectural Information: A Systematic Mapping Study"

description: The supplementary material is composed of three files:

1. SelectedStudies.pdfcontains the 104 studies selected in this systematic mapping study.

2. PublicationVenues.pdf

contains the major publication venues of the selected studies.

3. Dataset.xlsx

contains the following Excel sheets:

(1) Architecting Activities

contains the 11 architecting activities, mined architectural information, datasets and sources used in the selected studies, and relevant studies.

(2) Automatic Approaches

contains tasks, automatic approaches, used sources, mined architectural information, and relevant studies.

(3) Semi-automatic Approaches

contains tasks, semi-automatic approaches, used sources, mined architectural information, and relevant studies.

(4) Manual Approaches

contains tasks, manual approaches, used sources, mined architectural information, and relevant studies.

(5) General Tools 

contains general tool names, description of each tool, URL of each tool (if provided), and relevant studies.

(6) Automatic Tools

contains tasks, automatic tool names, used sources, mined architectural information, URL of each tool (if provided), and relevant studies.

(7) Semi-automatic Tools

contains tasks, semi-automatic tool, used sources, mined architectural information, URL of each tool (if provided), and relevant studies.
DOI: 10.5281/zenodo.10679093
title: data for the publication PSO paper

description: This file had a problem with the structure, making it difficult to import the data.

The same data may be found: https://zenodo.org/records/10796260

All the details of the signal processing and data for recreating the results may be found in the paper
description: The research was supported by the project "Guided waves based reference-free SHM using fiber Bragg grating sensors (REF-FREE)" (2020/39/D/ST8/00188) granted by National Science Center, Poland.
DOI: 10.5281/zenodo.10679094
title: data for the publication PSO paper

description: This file had a problem with the structure, making it difficult to import the data.

The same data may be found: https://zenodo.org/records/10796260

All the details of the signal processing and data for recreating the results may be found in the paper
description: The research was supported by the project "Guided waves based reference-free SHM using fiber Bragg grating sensors (REF-FREE)" (2020/39/D/ST8/00188) granted by National Science Center, Poland.
DOI: 10.5281/zenodo.10813114
title: Assessing Heavy Metal Contamination in Agricultural Soils: A Predictive Model Integrating GIS Tools and Probability-Risk Matrix – Case Study: Guarda Region, Portugal

description: In these files we can find the final risk map of heavy metal contamination for the guarding area in Portugal obtained according to the methodology explained in the paper "Assessing Heavy Metal Contamination in Agricultural Soils: A Predictive Model Instegrating GIS Tools and Probability-Risk Matrix - Case Study: Guarda Region (Portugal)

Final Risk Equal.tiff:  GeoTiff with a pixel size of 30m. EPSG:3763 - ETRS89 / Portugal TM06

Also attached is the symbolisation for the image in .qml (Quantum GIS Layer Style File) format.

A file called RISK RECLASS is also available, where you can find the risk classification maps for each of the studied factors: 



Proximity to roads

Proximity to industrial areas

Ph

Soil organic content

Slope

Soil texture

Mining extraction areas 

Drainage


finally a DATABASE file where the data of the 360 points for the calculation of the risk maps can be found.
DOI: 10.48324/dandi.000933/0.240315.1758
title: 20240331_AIBS_Patchseq_human

description: HMBA Lein PatchSeq upload (human) (Q1 2024)
DOI: 10.60895/redata/5uw40z
title: Temperatura del mar horaria 1km mar adentro del Puerto de La Paloma durante 2016/2017

description: One year of hourly sea temperature data at 0.5 meters depth 1 kilometer far away from La Paloma Port, in the Atlantic Coast of Uruguay. Measured by a Star-oddi DST-CTD moored in a buoy. From 1 December 2016 to 30 November 2017 located at 34.65ºS, 54.12ºW.
DOI: 10.5281/zenodo.10246327
title: Evaluation Artifacts of RESTRuler, a Static Analysis Tool to Detect Design Rule Violations in OpenAPI Definitions

description: All artifacts related to the empirical evaluation of the RESTRuler CLI, a Java-based tool to identify design rule violations in OpenAPI descriptions
DOI: 10.5281/zenodo.10775913
title: The dataset for Evaluation of plume-induced continental crust growth rate in early Earth: Insight from integrated petrological-thermo-mechanical modeling

description: All data of model results for the paper Evaluation of plume-induced continental crust growth rate in early Earth: Insight from integrated petrological-thermo-mechanical modeling.

Contents of this dataset includes:

A list for models and data of model results are provided in the zip file. 

The files suffixed *.grd are grid datas that can be draw by GMT.

The files suffixed *.info are datas of the evolution of volume of the continental crust and TTGs in the model.

The files suffixed *.prn are datas of P-T condtions of continental crust generation by partial melting.

The files suffixed *.py are python codes for visualization of the volume of continental crust and P-T datas.
DOI: 10.5281/zenodo.10775914
title: The dataset for Evaluation of plume-induced continental crust growth rate in early Earth: Insight from integrated petrological-thermo-mechanical modeling

description: All data of model results for the paper Evaluation of plume-induced continental crust growth rate in early Earth: Insight from integrated petrological-thermo-mechanical modeling.

Contents of this dataset includes:

A list for models and data of model results are provided in the zip file. 

The files suffixed *.grd are grid datas that can be draw by GMT.

The files suffixed *.info are datas of the evolution of volume of the continental crust and TTGs in the model.

The files suffixed *.prn are datas of P-T condtions of continental crust generation by partial melting.

The files suffixed *.py are python codes for visualization of the volume of continental crust and P-T datas.
DOI: 10.5281/zenodo.10558363
title: Single-center, double-blind, randomized, placebo-controlled, single andmultiple dose escalation study to assess safety and tolerability and pharmacokinetics of HRX215 in healthy male volunteers under food and fasting conditions

description: Diminished hepatocyte regeneration is a key feature of acute and chronic liver diseases and after extended liver resections, resulting in the inability to maintain or restore a sufficient functional liver mass. Therapies to restore hepatocyte regeneration are lacking, making liver transplantation the only curative option for end stage liver disease. We here report on the structure-based development and characterization (NMR-spectroscopy) of first-in-class small molecule inhibitors of the dual specific kinase MKK4 (MKK4i). MKK4i increased liver regeneration upon hepatectomy in murine and porcine models, allowed for survival of pigs in a lethal 85% hepatectomy model and showed antisteatotic and antifibrotic effects in liver disease mouse models. A first-in-human phase I trial (EudraCT 2021-000193-28) with the clinical candidate HRX215 was conducted and revealed excellent safety and pharmacokinetics. Clinical trials to probe HRX215 for prevention/treatment of liver failure after extensive oncological liver resections or after transplantation of small grafts are warranted.
DOI: 10.5281/zenodo.10558364
title: Single-center, double-blind, randomized, placebo-controlled, single andmultiple dose escalation study to assess safety and tolerability and pharmacokinetics of HRX215 in healthy male volunteers under food and fasting conditions

description: Diminished hepatocyte regeneration is a key feature of acute and chronic liver diseases and after extended liver resections, resulting in the inability to maintain or restore a sufficient functional liver mass. Therapies to restore hepatocyte regeneration are lacking, making liver transplantation the only curative option for end stage liver disease. We here report on the structure-based development and characterization (NMR-spectroscopy) of first-in-class small molecule inhibitors of the dual specific kinase MKK4 (MKK4i). MKK4i increased liver regeneration upon hepatectomy in murine and porcine models, allowed for survival of pigs in a lethal 85% hepatectomy model and showed antisteatotic and antifibrotic effects in liver disease mouse models. A first-in-human phase I trial (EudraCT 2021-000193-28) with the clinical candidate HRX215 was conducted and revealed excellent safety and pharmacokinetics. Clinical trials to probe HRX215 for prevention/treatment of liver failure after extensive oncological liver resections or after transplantation of small grafts are warranted.
DOI: 10.5281/zenodo.10054186
title: Experimental dataset referring to: Non-intrusive temperature measurements for transient freezing in laminar internal flow using laser induced fluorescence

description: This data set corresponds to the paper 'Non-intrusive temperature measurements for transient freezing in laminar internal flow using laser induced fluorescence. Please cite this paper when using this data. 
The following conditions are included (for both the inlet and the centre of the channel):
Re = 474, T_in,set = 0.5
Re = 474, T_in,set = 5.0
Re = 474, T_in,set = 10.0
Re = 474, T_in,set = 15.0
Each folder includes the original two-color LIF ratio-metric data and the temperature recordings of the cold-plate as well as the inlet, outlet temperatures and the flow rate (TData). The header for the recordings is included in the main dataset which may be used to navigate the columns and select the relevant data.
DOI: 10.5281/zenodo.10054187
title: Experimental dataset referring to: Non-intrusive temperature measurements for transient freezing in laminar internal flow using laser induced fluorescence

description: This data set corresponds to the paper 'Non-intrusive temperature measurements for transient freezing in laminar internal flow using laser induced fluorescence. Please cite this paper when using this data. 
The following conditions are included (for both the inlet and the centre of the channel):
Re = 474, T_in,set = 0.5
Re = 474, T_in,set = 5.0
Re = 474, T_in,set = 10.0
Re = 474, T_in,set = 15.0
Each folder includes the original two-color LIF ratio-metric data and the temperature recordings of the cold-plate as well as the inlet, outlet temperatures and the flow rate (TData). The header for the recordings is included in the main dataset which may be used to navigate the columns and select the relevant data.
DOI: 10.5281/zenodo.10813625
title: 94 GHz cloud radar simulation data using NICAM and Joint simulator for evaluation of ground-based radar and application to the EarthCARE satellite

description: Overview

These data are snapshots of simulated radar reflectivity and Doppler velocity from the 94 GHz Cloud Profiling Radar (CPR). The simulations were conducted using the Joint-Simulator for Satellite Sensors (Joint-Simulator; Hashino et al., 2013; Roh et al., 2020), and the input data was from the Nonhydorstatic Icosahedral Atmospheric Model (NICAM; Satoh et al., 2014). To focus on the region of interest with high resolution, NICAM transformed the grid (the stretched NICAM; Tomita 2008a) using a G-Level 10 (GL10) horizontal resolution with a stretch-factor of 100 (the ratio between the maximum and minimum grid intervals), where the minimum grid interval is approximately 800 m. We simulated two cases of rain events in September 2019. The first case (case 1) is the tropical cyclone (TC) Faxai. The second is a weak frontal system (case 2). In case 1 the integration and analysis time was from 00 UTC on 8 September to 00 UTC on 9 September 2019. In case 2 the integration and analysis time was from 00 UTC on 20 September to 00 UTC on 21 September 2019. We evaluated the data using the gournd observation and introduced a methodology for using the CPR data for model evaluations. We simulated Doppler velocity of the EarthCARE CPR. 

 

Directory structure and file format

There are two files.

For Ground_CPR, there are simuation data based on the ground.

For Satellite_CPR, there are simulation data bsed on instrument setting of EarthCARE CPR.

(Note the order of the array of Satelltie_CPR is different from Ground_CPR.)

The files are in the NetCDF4 format.

The files have the following name format.

AAA_XXX_TIME_EASE.nc

AAA: Ecare (CPR simulation withot random errors), Mode(CPR simulation with randome errors based on window observaion mode)

XXX: NICAM Single Moment sheme 6 category (NSW6) and NICAM Dobule Moment scheme 6 category(NDW6)

TIME: The simulation time

EASE:  EarthCARE Active SEnsor simulator (EASE)

 

 

 

These data are only one snapshot data and limited variables becuase of file size issue.

If you have any questions or want additional data, please contact the email below

Contacts:

Woosub Roh  (ws-roh@aori.u-tokyo.ac.jp)
DOI: 10.5281/zenodo.10813626
title: 94 GHz cloud radar simulation data using NICAM and Joint simulator for evaluation of ground-based radar and application to the EarthCARE satellite

description: Overview

These data are snapshots of simulated radar reflectivity and Doppler velocity from the 94 GHz Cloud Profiling Radar (CPR). The simulations were conducted using the Joint-Simulator for Satellite Sensors (Joint-Simulator; Hashino et al., 2013; Roh et al., 2020), and the input data was from the Nonhydorstatic Icosahedral Atmospheric Model (NICAM; Satoh et al., 2014). To focus on the region of interest with high resolution, NICAM transformed the grid (the stretched NICAM; Tomita 2008a) using a G-Level 10 (GL10) horizontal resolution with a stretch-factor of 100 (the ratio between the maximum and minimum grid intervals), where the minimum grid interval is approximately 800 m. We simulated two cases of rain events in September 2019. The first case (case 1) is the tropical cyclone (TC) Faxai. The second is a weak frontal system (case 2). In case 1 the integration and analysis time was from 00 UTC on 8 September to 00 UTC on 9 September 2019. In case 2 the integration and analysis time was from 00 UTC on 20 September to 00 UTC on 21 September 2019. We evaluated the data using the gournd observation and introduced a methodology for using the CPR data for model evaluations. We simulated Doppler velocity of the EarthCARE CPR. 

 

Directory structure and file format

There are two files.

For Ground_CPR, there are simuation data based on the ground.

For Satellite_CPR, there are simulation data bsed on instrument setting of EarthCARE CPR.

(Note the order of the array of Satelltie_CPR is different from Ground_CPR.)

The files are in the NetCDF4 format.

The files have the following name format.

AAA_XXX_TIME_EASE.nc

AAA: Ecare (CPR simulation withot random errors), Mode(CPR simulation with randome errors based on window observaion mode)

XXX: NICAM Single Moment sheme 6 category (NSW6) and NICAM Dobule Moment scheme 6 category(NDW6)

TIME: The simulation time

EASE:  EarthCARE Active SEnsor simulator (EASE)

 

 

 

These data are only one snapshot data and limited variables becuase of file size issue.

If you have any questions or want additional data, please contact the email below

Contacts:

Woosub Roh  (ws-roh@aori.u-tokyo.ac.jp)
DOI: 10.26207/t5ea-4371
title: Data for "MARCH family E3 ubiquitin ligases selectively target and degrade cadherin family proteins"
DOI: 10.5281/zenodo.10814010
title: Dataset for "Three-dimensional spin-wave dynamics, localization and interference  in a synthetic antiferromagnet"

description: Data availability for the article titled "Three-dimensional spin-wave dynamics, localization and interference in a synthetic antiferromagnet" by Girardi et al. published in Nature Communications.

This data repository contains the following folders and files:•    TR Lamni Raw Data - Co: Files with extension .hdf5 are Time-Resolved Soft X-Ray Laminography Raw Data for all projections acquired to obtain the 3D reconstruction for the CoFeB layer. The projections’ data have been organized in sub-folders for the 7 frames acquired during the measurements. For each frame, a final folder “analysis” contains an aligned_projection.mat file with the angles of all measured projections and the sinogram information.•    TR Lamni Raw Data - Ni: Files with extension .hdf5 are Time-Resolved Soft X-Ray Laminography Raw Data for all projections acquired to obtain the 3D reconstruction for the NiFe layer. The projections’ data have been organized in sub-folders for the 7 frames acquired during the measurements. For each frame, a final folder “analysis” contains an aligned_projection.mat file with the angles of all measured projections and the sinogram information.•    Magnetic reconstruction – Ni edge: contains the .mat files of the 3D magnetic reconstruction obtained for Ni-edge for all 7 frames. In each file, the Mx, My and Mz components of the magnetization associated with the 3D reconstruction of the volume of the sample are present. •    Magnetic reconstruction – Co edge: contains the .mat files of the 3D magnetic reconstruction obtained for Co-edge for all 7 frames. In each file, the Mx, My and Mz components of the magnetization associated with the 3D reconstruction of the volume of the sample are present. •    vtk files: contains the post-processed files for all 7 frames in the .vtk format for the 3D visualization with the Paraview software. In each file, both vectorial and scalar data associated with the 3D reconstruction of the volume of the sample and analyzed in the paper are present.•    Mumax3 simulation dispersion relation: contains .ovf files (containing information about the Mx, My, Mz components of the magnetization as a function of the spatial position) obtained from the mumax3 simulation to study the spin wave dispersion relation of the sample investigated. The total simulation runtime is 10 ns, and each .ovf file corresponds to a frame saved every 0.01 ns.•    Mumax3 simulation 3D interference: contains the .ovf files (containing information about the Mx, My, Mz components of the magnetization as a function of the spatial position) for the static magnetization and 3 frames used to simulate the 3D interference pattern observed experimentally.