cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gm36bt
title: Occurrence Download

description: A dataset containing 5729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki Girard, 1859",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5729 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078737-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7dkp4
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammi majus L.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078739-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shqttj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammi majus L.",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078741-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/5892
title: USSocialIssues_2016ElectionSurvey
DOI: 10.15468/dl.5gtgff
title: Occurrence Download

description: A dataset containing 6253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Brazil, Guyana, Venezuela (Bolivarian Republic of), Panama, Mexico, Costa Rica, Peru, Bolivia (Plurinational State of), Ecuador, Trinidad and Tobago, Suriname, Belize)",
 "DatasetKey is one of (Mammalogy Collection - Royal Ontario Museum, Museu Paraense Emílio Goeldi - Mastozoology Collection)",
 "TaxonKey is Carollia perspicillata (Linnaeus, 1758)"
 ]
}

 The dataset includes 6253 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078742-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfr7ne
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammi majus L.",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078740-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbr7k6
title: Occurrence Download

description: A dataset containing 3630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alburnus alburnus (Linnaeus, 1758)",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3630 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078744-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekemva
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078746-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15035935
title: Database_Xpert_MTB_XDR_vs_Deeplex_Myc_TB

description: This dataset contains the results of a validation study comparing the performance of the Xpert MTB/XDR assay with the Deeplex Myc-TB targeted next-generation sequencing (tNGS) assay, phenotypic drug susceptibility testing (pDST), and whole-genome sequencing (WGS) for the detection of drug-resistant Mycobacterium tuberculosis. The dataset includes processed mutation data, interpreted results, and comparisons between methodologies used to resolve discordant cases.

The raw sequencing data (FASTQ files) will be deposited in NCBI SRA/ENA, and the accession number will be provided upon publication.

This dataset is shared to ensure transparency and reproducibility in TB diagnostics research. Researchers interested in accessing the data can refer to the corresponding author for additional details
DOI: 10.15468/dl.extj83
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 584 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078745-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14676957
title: Dataset Schizotypy and internalized Stigma

description: The dataset contains the answers of 502 participants regarding the following variables:

NAME of VARIABLE     DESCRIPTION

ID                                 Participant's identifier

SPQB1-22                     Schizotypal Personality Questionnaire-Brief (SPQB) scale, items 1 to 22

SPQTOT                        Total score of the SPQB

ISMI1-9                         Internalized Stigma of Mental Illness scale, items 1 to 9

ISMITOT w/o item2      Total score of the ISMI calculated without item 2

PTQ1-10                       Perseverative Thinking Questionnaire (PTQ) scale, items 1-10

PTQTOT                        Total score of the PTQ

MiniSPIN1-3                 Mini-SPIN scale, items 1 to 3

MiniSPINTOT                Total score of the MiniSPIN

PHQ1-9                        Patient Health Questionnaire (PHQ)-9 scale, items 1 to 9

PHQTOT                       Total score of the PHQ-9

GAD1-7                        Generalized Anxiety Disorder (GAD)-7 scale, items 1 to 7

GADTOT                       Total score of the GAD-7

ATTENTION                  Attention check item; correct answer = 1, incorrect answer = 0

GENDER                       Participant's gender; man = 1, woman = 3, non-binary = 2

AGE                              Participant's age in years

EDUCLEVEL                 Participant's educational level; first year of bachelor = 1, second year of bachelor = 2, third year of bachelor = 3, first year of master = 4, second year of master = 5, PhD study = 6, undefined = 99
DOI: 10.5281/zenodo.15087655
title: Hyperspectral Image acquired on LRI curing process

description: This dataset was generated within the framework of the EU-funded FLASH-COMP project, which aims to develop a human-oriented solution for the early identification of defective composite parts in manufacturing. The overarching goal is to enhance composite manufacturing processes by enabling zero-defect production and reducing material waste generation.

A key enabling technology in the project is Hyperspectral Imaging (HSI). This dataset contains hyperspectral images acquired during the production of two composite parts manufactured using the Liquid Resin Infusion (LRI) process. The data is intended to support research and development on process monitoring and quality assurance in advanced manufacturing.





Data Structure:





sampleA_hsi_reflectance.npy:Contains the raw reflectance hypercubes of all acquisitions (N) during the curing phase of Sample A, saved in .npy format.




sampleA_auxiliary_data.zip:Contains:





Reference cure degree values: One vector of N values for each sensor used, saved in .npy format.




Sensor positions within the hyperspectral image: Defined using Regions of Interest (ROI) in [x1, y1, x2, y2] format. Each ROI is stored in a .npy file as an [N, 4] matrix, where N is the number of acquisitions.






sampleB_hsi_reflectance.zip:Contains the raw reflectance hypercubes of all acquisitions during the curing phase of Sample B, saved in .npy format.





Note: This dataset is currently under embargo and will be made publicly available upon acceptance of the associated peer-reviewed article.
DOI: 10.5281/zenodo.15387584
title: Nephelometer measurements of aerosol particle scattering and backscattering coefficients in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains 1-minute averaged measurements of aerosol particle scattering and backscattering coefficients at three wavelengths—blue (450 nm), green (525 nm), and red (635 nm)—using the Aurora™ 3000 three-wavelength integrating nephelometer (Acoem, Melbourne, Australia). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Metadata can be found in the file 'Metadata_Nephelometer.docx'. Briefly, the dataset files (Nephelometer.csv) include:



Datetime

Scattering coefficient at 450, 525 and 635 nm (M m-1)

Backscattering coefficients at 450, 525 and 635 nm (M m-1)

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Calibration flag to inform data user of data after unsuccessful calibration, where calibration values did not fall within the range suggested by the manufacturer


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.15387063
title: Lidar ceilometer (CL61) measurements of attenuated backscatter coefficient and linear depolarisation ratio in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains atmospheric profiles of attenuated backscatter coefficient and linear depolarization ratio measured with a lidar ceilometer CL61 (Vaisala, Finland) during the GreenFjord campaign from June to August 2023 in Narsaq, Greenland. Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level).

Full description of the dataset and the cleaning procedure for the data can be found in the Metadata_CL61.docx file. 

Briefly, the dataset file (CL61_GF.nc) consists of a netcdf file which includes:



Datetime

Measured distance from the instrument in the direction of the transmitted laser beam

Attenuated backscatter coefficient (raw)

Attenuated backscatter coefficient (clean)

Linear depolarisation ratio (raw)

Linear depolarisation ratio (clean)


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.15387480
title: Vertical aerosol, trace gas and weather data taken with a tethered balloon system in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains vertical profile measurements, up to altitudes of around 700 m, from a tethered balloon platform including the following: aerosol light absorption coefficients at 450, 525 and 624 nm measured with a Single-channel Tricolour Absorption Photometer (STAP, Brechtel Manufacturing, Inc, USA); particle number size distributions between 186 and 3370 nm measured with a Portable Optical Particle Spectrometer (POPS, Handix Scientific LLC, USA); particle number size distributions and total particle concentration between 8 and 300 nm measured by a miniaturised Scanning Electrical Mobility Sizer (mSEMS, model 9404, Brechtel Manufacturing Inc., USA) with a soft x-ray neutraliser (soft x-ray charger, XRC-05, HCTM Co., Ltd., South Korea), a differential mobility analyser (DMA) column and an advanced mixing condensation particle counter (amCPC, model 9403, Brechtel Manufacturing, In., USA); CO2 mixing ratio (Vaisala CARBOCAP Carbon Dioxide Probe GMP343, Vaisala, Finland); wind direction and wind speed measurements from the SmartTether Weather Sonde (Anasphere, Inc) and temperature and RH measurements by RH/T sensors (SHT85, Sensiron). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.







Metadata is provided in the file 'metadata_flight.docx'. Briefly, this dataset contains:






Datetime

Altitude above ground (m)

Pressure (hPa)

Air temperature (degC)

Relative humidity (%)

Wind direction (deg)

Wind speed (m s-1)

CO2 mixing ratio (ppm)

Total particle number concentration between 8 and 300 nm (particles cm-3)

Total particle number concentration between 186 and 3370 nm (particles cm-3)

Normalised particle concentrations for each bin between 8 and 300 and 186 and 3370 nm (dN/dlogDp)

Absorption coefficients for 624, 525 and 450 nm (M m-1)

flight number


Normalised particle concentrations from the mSEMS instrument between 8 and 300 nm can be found in Lv2_flight_mSEMS.csv. The bin boundaries for the mSEMS and POPS instruments can be found in the mSEMS_bin_diameters.csv and POPS_bin_diameters.csv files.

Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.15468/dl.tdf4ns
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conium maculatum L.",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078747-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10823259
title: Direct measurement of RNA Polymerase II hypertranscription in cancer FFPE samples

description: This archive contains contains the processed FFPE-CUTAC data for the liver tumor samples from deidentified patients.

Hypertranscription is widespread in aggressive human cancers. However detection relies on mRNAs, which are heavily processed and have variable half-lives, and on accurate cell number estimations. Previously we introduced FFPE-CUTAC, a genome-wide method for mapping RNA Polymerase II in formalin-fixed paraffin-embedded (FFPE) sections. Here we apply FFPE-CUTAC on slides and curls to demonstrate hypertranscription at regulatory elements and replication-coupled histone genes. We find that hypertranscription differs between transgene-driven mouse gliomas and scales with enhanced proliferation and reduced mitochondrial DNA. We also apply FFPE-CUTAC to identify tumor-specific patterns in assorted human tumor-normal pairs. We analyze the top-ranked 100 annotated regulatory elements that are hypertranscribed in most of the tumors and identify multiple loci around ERBB2 on Chromosome 17q12-21 in the breast and colon cancer samples, mapping likely HER2 amplifications punctuated by selective sweeps. Our results demonstrate that FFPE-CUTAC measurement of hypertranscription provides an affordable and sensitive genome-wide strategy for cancer diagnosis.
DOI: 10.5281/zenodo.15387706
title: Ozone (O3) measurements in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains 1-minute averaged measurements of dry-air ozone mole fraction (ppb) obtained using a dual-beam ozone monitor (Model 205, 2B Technologies). The instrument determines ozone concentration via UV absorption through two optical absorption cells with quartz windows. Measurements were conducted behind a Teflon© inlet line at Narsaq International Research Station (NIRS), centrally located in Narsaq, Southern Greenland (lat: 60.9157503°, lon: -46.0533263°, alt: 17 m above sea level), during the Greenfjord campaign in June-August 2023.

Metadata is provided in the file ‘metadata_ozone.doc’. Briefly, this dataset file ‘Lv2_Ozone.csv’ includes:



Datetime

Dry air mixing ratio of ozone in ppb

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.5281/zenodo.13836209
title: Conformational dynamics and multi-modal interaction of Paxillin with the Focal Adhesion Targeting Domain

description: Paxillin (PXN) and focal adhesion kinase (FAK) are two major components of the focal adhesion complex, a multiprotein structure linking the intracellular cytoskeleton to the cell exterior. PXN interacts directly with the C-terminal targeting domain of FAK (FAT) via its intrinsically disordered N-terminal domain. This interaction is necessary and sufficient for localizing FAK to focal adhesions. Furthermore, PXN serves as a platform for recruiting other proteins that together control the dynamic changes needed for cell migration and survival. Here, we show that the PXN disordered region undergoes large-scale conformational restriction upon binding to FAT, forming a 48-kDa multi-modal complex consisting of four major interconverting states. Although the complex is flexible, each state has unique sets of contacts involving disordered regions that are both highly represented in ensembles and conserved. As PXN is a hub protein, the results provide a structural basis for understanding how perturbations that lead to cellular network rewiring, such as ligand binding and phosphorylation, may lead to shifts in the multi-state equilibrium and phenotypic switching.

This repository contains the softwares, scripts and data used to reproduce the findings presented in this work.
DOI: 10.5281/zenodo.15399626
title: The Impact of Granting Undocumented Immigrants Driver's Licenses on Fatal Crashes

description: This dataset contains the data and code used to replicate the empirical results in the paper:“The Effect of Granting Driver’s Licenses to Undocumented Immigrants on Fatal Crashes.”

The paper examines the causal impact of state-level driver’s license reforms on fatal vehicle crashes involving undocumented immigrants. Using county-level crash data from the Fatality and Injury Reporting System Tool (FIRST) and exploiting the staggered adoption of driver’s license policies across states, the analysis finds that such reforms increase fatal crashes by approximately 5%, with stronger effects in states with larger undocumented populations. The mechanism analysis suggests that increased risky driving behavior among newly licensed undocumented immigrants may explain the rise in crashes. 

This repository includes:





Cleaned and constructed data files




Stata code to replicate tables and figures




A README file with instructions for reproducing the results



All materials are intended for replication purposes.
DOI: 10.5281/zenodo.13685166
title: Evolution of venom production in marine predatory snails

description: This repository contains the following datasets:



annotations.zip: includes two files per species. The "species_code_annot.tsv" file (e.g., CI_annot.tsv) includes the blast hits to Uniprot/SwissProt (_sp), gastropod genomes (_gastr), Cdd (_cdd), Pfam (_pfam), ToxProt (_tox), and Conoserver (_cono); the output of SignalP and of ConoPrec. The "species_code_topGO.tsv" file (e.g., CI_topGO.tsv) corresponds the GO annotations in a format compatible with TopGO.

assemblies.zip: includes the nucleotide coding sequences as "species_code_cds.fasta" (e.g., CI_cds.fasta) and the predicted amino acid sequences as "species_code.faa" (e.g., CI.faa) in fasta format.

expression_matrices.zip: includes the final, quality-filtered expression matrices in TPM for each species separately as "species_code_tpm.tsv" (e.g., CI_tpm.tsv). The multi-species expression matrices based on the random-selection method ("multispecies_tpm_random.tsv") and mean method ("multispecies_tpm_mean.tsv") are provided.

tissue_specific_gene_sets.zip: includes the list of tissue-specific genes for each species as "species_code_fc2_tb.tsv" (e.g., CI_fc2_tb.tsv). The column "tissue1" corresponds to the tissue with the highest TPM value ("tpm1"), therefore the tissue to which that gene is specific, while "tissue2" correspond to the tissue with the second-highest TPM values ("tpm2"). "FC" is the fold-change.

orthologer_output: includes the orthogroup assigment as outputted by the software OrthoLoger. Specifically, "path2proteome_orthogroups.txt" corresponds to the orthogroup assignment for all genes assigned to an orthogroup, while "path2proteome_stats.txt" list some statistic parameters (e.g., size of the orthogroups etc.).

CAGEE_output: includes the output from the software CAGEE as reported in the manual (https://github.com/hahnlab/CAGEE/blob/main/docs/manual/cagee_manual.md#Installation). The results for both, a gene expression matrix based on the random-selection method and the mean-based method are reported in separate folders. Within each folder are reported the results for the gland, salivary glands, and oesophagus separately. Additionally, the ultrametric species tree and the sigma tree, both in in Newick format, are provided.
DOI: 10.5281/zenodo.15387460
title: Carbon monoxide (CO) measurements in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains measurements of dry carbon monoxide (CO) mixing ratios in parts per million (ppm), obtained using a MIRA Pico portable mid-infrared laser-based gas analyzer (Pico series, Aeris Technologies, Inc., USA). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Metadata is provided in the file ‘metadata_CO.doc’. Briefly, this dataset file ‘Lv2_CO.csv’ includes:



Datetime

mixing ratio of dry CO in ppm

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.