cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48370/ofd/2aipv5
title: Miękusz rabarbarowy (Hapalopilus rutilans (Pers.: Fr.) P.Karst), 3431

description: Grzyby makromycetes
DOI: 10.6084/m9.figshare.19936484
title: Vitamin A, vitamin E, iron and zinc status in a cohort of HIV-infected mothers and their uninfected infants

description: Introduction We hypothesized that nutritional deficiency would be common in a cohort of postpartum, human immunodeficiency virus (HIV)-infected women and their infants. Methods Weight and height, as well as blood concentrations of retinol, α-tocopherol, ferritin, hemoglobin, and zinc, were measured in mothers after delivery and in their infants at birth and at 6-12 weeks and six months of age. Retinol and α-tocopherol levels were quantified by high performance liquid chromatography, and zinc levels were measured by atomic absorption spectrophotometry. The maternal body mass index during pregnancy was adjusted for gestational age (adjBMI). Results Among the 97 women 19.6% were underweight. Laboratory abnormalities were most frequently observed for the hemoglobin (46.4%), zinc (41.1%), retinol (12.5%) and ferritin (6.5%) levels. Five percent of the women had mean corpuscular hemoglobin concentrations &lt; 31g/dL. The most common deficiency in the infants was α-tocopherol (81%) at birth; however, only 18.5% of infants had deficient levels at six months of age. Large percentages of infants had zinc (36.8%) and retinol (29.5%) deficiencies at birth; however, these percentages decreased to 17.5% and 18.5%, respectively, by six months of age. No associations between infant micronutrient deficiencies and either the maternal adjBMI category or maternal micronutrient deficiencies were found. Conclusions Micronutrient deficiencies were common in HIV-infected women and their infants. Micronutrient deficiencies were less prevalent in the infants at six months of age. Neither underweight women nor their infants at birth were at increased risk for micronutrient deficiencies.
DOI: 10.6084/m9.figshare.19936484.v1
title: Vitamin A, vitamin E, iron and zinc status in a cohort of HIV-infected mothers and their uninfected infants

description: Introduction We hypothesized that nutritional deficiency would be common in a cohort of postpartum, human immunodeficiency virus (HIV)-infected women and their infants. Methods Weight and height, as well as blood concentrations of retinol, α-tocopherol, ferritin, hemoglobin, and zinc, were measured in mothers after delivery and in their infants at birth and at 6-12 weeks and six months of age. Retinol and α-tocopherol levels were quantified by high performance liquid chromatography, and zinc levels were measured by atomic absorption spectrophotometry. The maternal body mass index during pregnancy was adjusted for gestational age (adjBMI). Results Among the 97 women 19.6% were underweight. Laboratory abnormalities were most frequently observed for the hemoglobin (46.4%), zinc (41.1%), retinol (12.5%) and ferritin (6.5%) levels. Five percent of the women had mean corpuscular hemoglobin concentrations &lt; 31g/dL. The most common deficiency in the infants was α-tocopherol (81%) at birth; however, only 18.5% of infants had deficient levels at six months of age. Large percentages of infants had zinc (36.8%) and retinol (29.5%) deficiencies at birth; however, these percentages decreased to 17.5% and 18.5%, respectively, by six months of age. No associations between infant micronutrient deficiencies and either the maternal adjBMI category or maternal micronutrient deficiencies were found. Conclusions Micronutrient deficiencies were common in HIV-infected women and their infants. Micronutrient deficiencies were less prevalent in the infants at six months of age. Neither underweight women nor their infants at birth were at increased risk for micronutrient deficiencies.
DOI: 10.6084/m9.figshare.19936507
title: Histological and endoscopic features of the stomachs of patients with Chagas disease in the era of Helicobacter pylori

description: Introduction Most studies that have evaluated the stomachs of patients with Chagas disease were performed before the discovery of Helicobacter pylori and used no control groups. This study compared the gastric features of chagasic and non-chagasic patients and assessed whether gastritis could be associated with Chagas disease. Methods Gastric biopsy samples were taken from patients who underwent endoscopy for histological analysis according to the Updated Sydney System. H. pylori infection was assessed by histology, 16S ribosomal ribonucleic acid (rRNA) polymerase chain reaction (PCR), serology and the 13C-urea breath test. Patients were considered H. pylori-negative when all of these diagnostic tests were negative. Clinical and socio-demographic data were obtained by reviewing medical records and using a questionnaire. Results The prevalence of H. pylori infection (70.3% versus 71.7%) and chronic gastritis (92.2% versus 85%) was similar in the chagasic and non-chagasic groups, respectively; such as peptic ulcer, atrophy and intestinal metaplasia. Gastritis was associated with H. pylori infection independent of Chagas disease in a log-binomial regression model. However, the chagasic H. pylori-negative patients showed a significantly higher grade of mononuclear (in the corpus) and polymorphonuclear (PMN) (in the antrum) cell infiltration. Additionally, the patients with the digestive form of Chagas disease showed a significantly lower prevalence of corpus atrophy than those with other clinical forms. Conclusions The prevalence of H. pylori infection and of gastric histological and endoscopic features was similar among the chagasic and non-chagasic patients. Additionally, this is the first controlled study to demonstrate that H. pylori is the major cause of gastritis in patients with Chagas disease.
DOI: 10.6084/m9.figshare.19886895.v1
title: Coinfection by Toxoplasma gondii and Leishmania spp. in domestic cats (Felis catus) in State of Mato Grosso do Sul

description: Introduction Leishmaniasis and toxoplasmosis are important to public health. Methods Antibodies for Toxoplasma gondii and Leishmania spp. were evaluated in cats from Campo Grande, State of Mato Grosso do Sul, Brazil, a region endemic for canine visceral leishmaniasis. Serum samples from 50 asymptomatic cats were titrated for T. gondii by the immunofluorescence antibody test and modified agglutination test and for Leishmania spp. by the immunofluorescence antibody test. Results These two agents coinfected two (4%) of the 50 tested animals. Conclusions These findings demonstrate the concomitant presence of two important zoonoses in cats from Brazilian endemic regions for canine visceral leishmaniasis.
DOI: 10.6084/m9.figshare.19936507.v1
title: Histological and endoscopic features of the stomachs of patients with Chagas disease in the era of Helicobacter pylori

description: Introduction Most studies that have evaluated the stomachs of patients with Chagas disease were performed before the discovery of Helicobacter pylori and used no control groups. This study compared the gastric features of chagasic and non-chagasic patients and assessed whether gastritis could be associated with Chagas disease. Methods Gastric biopsy samples were taken from patients who underwent endoscopy for histological analysis according to the Updated Sydney System. H. pylori infection was assessed by histology, 16S ribosomal ribonucleic acid (rRNA) polymerase chain reaction (PCR), serology and the 13C-urea breath test. Patients were considered H. pylori-negative when all of these diagnostic tests were negative. Clinical and socio-demographic data were obtained by reviewing medical records and using a questionnaire. Results The prevalence of H. pylori infection (70.3% versus 71.7%) and chronic gastritis (92.2% versus 85%) was similar in the chagasic and non-chagasic groups, respectively; such as peptic ulcer, atrophy and intestinal metaplasia. Gastritis was associated with H. pylori infection independent of Chagas disease in a log-binomial regression model. However, the chagasic H. pylori-negative patients showed a significantly higher grade of mononuclear (in the corpus) and polymorphonuclear (PMN) (in the antrum) cell infiltration. Additionally, the patients with the digestive form of Chagas disease showed a significantly lower prevalence of corpus atrophy than those with other clinical forms. Conclusions The prevalence of H. pylori infection and of gastric histological and endoscopic features was similar among the chagasic and non-chagasic patients. Additionally, this is the first controlled study to demonstrate that H. pylori is the major cause of gastritis in patients with Chagas disease.
DOI: 10.6084/m9.figshare.19936540.v1
title: Immature Aedes mosquitoes colonize Culex quinquefasciatus breeding sites in neighborhoods in the municipality of Olinda, State of Pernambuco

description: Introduction The present study shows the colonization of Aedes mosquitoes in breeding sites specific for Culex quinquefasciatus in neighborhoods in the municipality of Olinda. Methods Samples were collected between May 2011 and June 2012 from breeding sites positive for Cx. quinquefasciatus by using a ladle and manual suction pump. Results Aedes aegypti (0.12%), Aedes albopictus (0.03%), and Cx. quinquefasciatus (99.8%) were found across the breeding sites. Conclusions The presence of Aedes ssp. in several Cx. quinquefasciatus breeding sites with a heavy load of organic material demonstrates the need to review the concepts and methods used for treatment, as the use of specific larvicide for breeding sites of Culex.
DOI: 10.6084/m9.figshare.19886895
title: Coinfection by Toxoplasma gondii and Leishmania spp. in domestic cats (Felis catus) in State of Mato Grosso do Sul

description: Introduction Leishmaniasis and toxoplasmosis are important to public health. Methods Antibodies for Toxoplasma gondii and Leishmania spp. were evaluated in cats from Campo Grande, State of Mato Grosso do Sul, Brazil, a region endemic for canine visceral leishmaniasis. Serum samples from 50 asymptomatic cats were titrated for T. gondii by the immunofluorescence antibody test and modified agglutination test and for Leishmania spp. by the immunofluorescence antibody test. Results These two agents coinfected two (4%) of the 50 tested animals. Conclusions These findings demonstrate the concomitant presence of two important zoonoses in cats from Brazilian endemic regions for canine visceral leishmaniasis.
DOI: 10.6084/m9.figshare.19936540
title: Immature Aedes mosquitoes colonize Culex quinquefasciatus breeding sites in neighborhoods in the municipality of Olinda, State of Pernambuco

description: Introduction The present study shows the colonization of Aedes mosquitoes in breeding sites specific for Culex quinquefasciatus in neighborhoods in the municipality of Olinda. Methods Samples were collected between May 2011 and June 2012 from breeding sites positive for Cx. quinquefasciatus by using a ladle and manual suction pump. Results Aedes aegypti (0.12%), Aedes albopictus (0.03%), and Cx. quinquefasciatus (99.8%) were found across the breeding sites. Conclusions The presence of Aedes ssp. in several Cx. quinquefasciatus breeding sites with a heavy load of organic material demonstrates the need to review the concepts and methods used for treatment, as the use of specific larvicide for breeding sites of Culex.
DOI: 10.6084/m9.figshare.19936640
title: Oral and systemic manifestations in HIV-1 patients

description: INTRODUCTION: This study aimed to estimate the prevalence of the most frequent oral and systemic manifestations in human immunodeficiency virus-1 (HIV-1)-positive patients. METHODS: The study was conducted on 300 HIV-1 patients attending the Reference Unit Specialized in Special Infectious Parasitic Diseases in Belém, Pará, Brazil. RESULTS: The most prevalent oral conditions were caries (32.6%), candidiasis (32%), and periodontal disease (17%). Among the systemic manifestations, hepatitis (29.2%), gastritis (16%), arterial hypertension (14.7%), and tuberculosis (12%) were the most commonly observed. CONCLUSIONS: We here reported on the most prevalent oral and systemic conditions in HIV-1-positive patients. The healthcare professional's knowledge of the various manifestations among these patients is fundamental to ensure prompt and accurate diagnosis and treatment, and for improving the quality of life of these patients.
DOI: 10.6084/m9.figshare.19936640.v1
title: Oral and systemic manifestations in HIV-1 patients

description: INTRODUCTION: This study aimed to estimate the prevalence of the most frequent oral and systemic manifestations in human immunodeficiency virus-1 (HIV-1)-positive patients. METHODS: The study was conducted on 300 HIV-1 patients attending the Reference Unit Specialized in Special Infectious Parasitic Diseases in Belém, Pará, Brazil. RESULTS: The most prevalent oral conditions were caries (32.6%), candidiasis (32%), and periodontal disease (17%). Among the systemic manifestations, hepatitis (29.2%), gastritis (16%), arterial hypertension (14.7%), and tuberculosis (12%) were the most commonly observed. CONCLUSIONS: We here reported on the most prevalent oral and systemic conditions in HIV-1-positive patients. The healthcare professional's knowledge of the various manifestations among these patients is fundamental to ensure prompt and accurate diagnosis and treatment, and for improving the quality of life of these patients.
DOI: 10.6084/m9.figshare.19936661.v1
title: Characteristics of pregnant and lactating women with leprosy

description: INTRODUCTION: The clinical characteristics of women who conceive during leprosy and the association between leprosy and pregnancy are not well known. METHODS: This cross-sectional study included 49 pregnant or lactating women diagnosed with leprosy in 2011. RESULTS: The patients had a clinical dimorphous form of leprosy (44.9%), no physical incapacity at diagnosis (87.5%), and no complications in either the patient or infant (33.4%). In 36.3% of cases, leprosy symptoms were presented in the last trimester of pregnancy, and in 31.9% of patients were in the first trimester of lactation. CONCLUSIONS: The association between leprosy and pregnancy should be routinely investigated, particularly in endemic areas.
DOI: 10.6084/m9.figshare.19936661
title: Characteristics of pregnant and lactating women with leprosy

description: INTRODUCTION: The clinical characteristics of women who conceive during leprosy and the association between leprosy and pregnancy are not well known. METHODS: This cross-sectional study included 49 pregnant or lactating women diagnosed with leprosy in 2011. RESULTS: The patients had a clinical dimorphous form of leprosy (44.9%), no physical incapacity at diagnosis (87.5%), and no complications in either the patient or infant (33.4%). In 36.3% of cases, leprosy symptoms were presented in the last trimester of pregnancy, and in 31.9% of patients were in the first trimester of lactation. CONCLUSIONS: The association between leprosy and pregnancy should be routinely investigated, particularly in endemic areas.
DOI: 10.6084/m9.figshare.19619700.v2
title: Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)

description: Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we aimed to establish a laboratory model and sequenced the genome and transcriptomes of elegance coral <em>Catalaphyllia jardinei </em>(Euphyllidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, and the south China Sea. Due to its popularity in reef tanks, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome contains ~651.3 Mbp and is of high physical contiguity with scaffold N50 size of 28.9 Mbp. The numbers of abiotic stress regulator heat shock protein family genes and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other anthozoans, and we have identified the first set of sesquiterpenoid biosynthetic pathway genes in corals. Sequencing of small RNAs allowed us to identify 35 microRNAs in <em>C. jardinei</em>, and allow us to update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development and response to climate change, and due to the easiness to culture <em>C. jardinei</em> in reef tanks and the established resources in this study, we propose this species can be adopted as a new laboratory model to underpin comparative work in environmental and ecological experiments.
DOI: 10.48370/ofd/tjolja/uh8hft
title: m-1953.tif

description: :unav
DOI: 10.48370/ofd/tjolja/lsoxhk
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1953 (2).JPG

description: :unav
DOI: 10.48370/ofd/81nr9g/l4hga3
title: m-1980.tif

description: :unav
DOI: 10.48370/ofd/tjolja/gfvvmb
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1953.JPG

description: :unav
DOI: 10.48370/ofd/81nr9g/aqwo2x
title: 1980_1.S3Dm

description: :unav
DOI: 10.48370/ofd/tjolja/ucbegx
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1953 (3).JPG

description: :unav
DOI: 10.48370/ofd/81nr9g/z6p5of
title: 1980_2.S3Dm

description: :unav
DOI: 10.48370/ofd/tjolja
title: Miękusz rabarbarowy (Hapalopilus rutilans (Pers.: Fr.) P.Karst), 1953

description: Grzyby makromycetes
DOI: 10.48370/ofd/81nr9g/wn1bnh
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1980.JPG

description: :unav
DOI: 10.48370/ofd/81nr9g/fpkbbx
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1980 (2).JPG

description: :unav
DOI: 10.48370/ofd/81nr9g
title: Miękusz rabarbarowy (Hapalopilus rutilans (Pers.: Fr.) P.Karst), 1980

description: Grzyby makromycetes
DOI: 10.6084/m9.figshare.2062047
title: Data 1

description: Raw MFM movie of CCaMP in two clusters of sensory neurons in C. elegans imaged in a microfluidic chip with a 60x silicon oil NA=1.3 objective. Sensory stimulation (benzaldehyde odor) starts around frame 100 (t=30 s) and ends around frame 200 (t=60 s). Successive focal planes are separated by 2 microns and lateral FOV in each plane is around 40x40 microns.
DOI: 10.6084/m9.figshare.2062047.v1
title: Data 1

description: Raw MFM movie of CCaMP in two clusters of sensory neurons in C. elegans imaged in a microfluidic chip with a 60x silicon oil NA=1.3 objective. Sensory stimulation (benzaldehyde odor) starts around frame 100 (t=30 s) and ends around frame 200 (t=60 s). Successive focal planes are separated by 2 microns and lateral FOV in each plane is around 40x40 microns.
DOI: 10.6084/m9.figshare.3199552.v1
title: Supporting Information: Differential Refractive index sensor based on Photonic molecules and defect cavities

description: This data contains extra calculations do not includes in the paper that justify some of the argumentation's and results presented in the paper
DOI: 10.6084/m9.figshare.3381082.v1
title: Nikon28-200_MLA2.75.zar

description: Zemax archive file containing plenoptic camera design used for refocusing distance estimation.
DOI: 10.6084/m9.figshare.3468698
title: Schwiegerling Reply.zip

description: Mathematica notebooks illustrating calculation of OTF Expansion basis functions.
DOI: 10.6084/m9.figshare.3468698.v1
title: Schwiegerling Reply.zip

description: Mathematica notebooks illustrating calculation of OTF Expansion basis functions.
DOI: 10.6084/m9.figshare.3827190
title: SupplementaryResults.zip

description: Tempocodes. The instructions for revealing is given in readme.txt
DOI: 10.6084/m9.figshare.3827190.v1
title: SupplementaryResults.zip

description: Tempocodes. The instructions for revealing is given in readme.txt
DOI: 10.48370/ofd/pt2boc/vgoo0z
title: m-1115.tif

description: :unav
DOI: 10.6084/m9.figshare.4629712
title: Spectral sensitivity data for various wearable light sensing actigraphy devices

description: Relative sensitivity to spectral irradiance with narrowband (monochromatic) light
DOI: 10.6084/m9.figshare.4763386
title: Examples of use for the FAS algorithm

description: We have created this supplementary instruction document demonstrating the use of the FAS algorithm, both in the theoretical case of the diffraction-limited spot and a circular light guide, as well as an octagonal light guide and a defocused spot using measured data. With these two examples, we hope to facilitate application of the algorithm in either a theoretical case, or a practical situation to obtain the alignment sensitivity curve.
DOI: 10.6084/m9.figshare.4763386.v1
title: Examples of use for the FAS algorithm

description: We have created this supplementary instruction document demonstrating the use of the FAS algorithm, both in the theoretical case of the diffraction-limited spot and a circular light guide, as well as an octagonal light guide and a defocused spot using measured data. With these two examples, we hope to facilitate application of the algorithm in either a theoretical case, or a practical situation to obtain the alignment sensitivity curve.
DOI: 10.6084/m9.figshare.4928741.v1
title: ChromosomesRawMFSIMData

description: Reconstructed MF-SIM data set of mouse synaptonemal complex
DOI: 10.6084/m9.figshare.4948523
title: 2b. GOPR1412 copy.MP4

description: Visualization 1 Caption: Time lapse video of antisolar twilight development. Field of View (FOV) of each frame is 118° x 69°. The view is westward over the Pacific Ocean and it was cold and clear at sunrise. Refracted solar altitude ε is shown in each frame. The video was taken in the time-lapse mode with a 2 second frame interval. When played back at 30 frames/sec, time compression was 60:1, resulting in 1 second of video time = 1 minute of real time. The video was taken with a GoPro Hero 4 Black on Dec 31, 2015 from Oceano Dunes State Vehicular Recreation Area (35.106070, -120.630673) near Pismo Beach, CA.
DOI: 10.6084/m9.figshare.4948523.v1
title: 2b. GOPR1412 copy.MP4

description: Visualization 1 Caption: Time lapse video of antisolar twilight development. Field of View (FOV) of each frame is 118° x 69°. The view is westward over the Pacific Ocean and it was cold and clear at sunrise. Refracted solar altitude ε is shown in each frame. The video was taken in the time-lapse mode with a 2 second frame interval. When played back at 30 frames/sec, time compression was 60:1, resulting in 1 second of video time = 1 minute of real time. The video was taken with a GoPro Hero 4 Black on Dec 31, 2015 from Oceano Dunes State Vehicular Recreation Area (35.106070, -120.630673) near Pismo Beach, CA.
DOI: 10.6084/m9.figshare.4928762.v1
title: TubulinReconstructedMFSIMData.tif

description: Reconstructed MF-SIM data set of chromosomes
DOI: 10.48370/ofd/pt2boc/yvc7na
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1115.JPG

description: :unav
DOI: 10.48370/ofd/ri2kgp/aky7fi
title: m-1128.tif

description: :unav
DOI: 10.48370/ofd/pt2boc/bnqyrk
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1115 (2).JPG

description: :unav
DOI: 10.48370/ofd/pt2boc
title: Miękusz rabarbarowy (Hapalopilus rutilans (Pers.: Fr.) P.Karst), 1115

description: Grzyby makromycetes
DOI: 10.48370/ofd/ri2kgp/upcked
title: 1128_1.S3Dm

description: :unav
DOI: 10.6084/m9.figshare.5173774
title: 2803211.csv

description: Data for measured output power, thermal lens power and beam quality factor
DOI: 10.48370/ofd/ri2kgp/9qp2s7
title: 1128_2.S3Dm

description: :unav
DOI: 10.6084/m9.figshare.5174422
title: 2840274.csv

description: Results of significance tests for all figures
DOI: 10.48370/ofd/ri2kgp/sbltiy
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1128.JPG

description: :unav
DOI: 10.6084/m9.figshare.5174422.v1
title: 2840274.csv

description: Results of significance tests for all figures
DOI: 10.48370/ofd/ri2kgp/s2znym
title: FMW Hapalopilus rutilans (Persoon) Murrill M-1128 (2).JPG

description: :unav
DOI: 10.48370/ofd/ri2kgp
title: Miękusz rabarbarowy (Hapalopilus rutilans (Pers.: Fr.) P.Karst), 1128

description: Grzyby makromycetes
DOI: 10.6084/m9.figshare.5183272
title: Visualization 1

description: Focused depth-slices from the specimen