cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fkxzzu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neoconger mucronatus Girard, 1858",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2005"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025982-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7283/t5j38qqz
title: Antarctica Support 1997/1998
title: S-302, McMurdo
DOI: 10.7283/t5db801g
title: Columbia Glacier 2004
DOI: 10.15468/dl.96m3yt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphilius uranoscopus (Pfeffer, 1889)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025983-250525065834625/datasets/export for details.
DOI: 10.15468/dl.vhqahv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Neoromicia robertsi Goodman, Taylor, Ratrimomanarivo & Hoofer, 2012",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025985-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v63dbg
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.69007 41.66521,-6.51597 41.66521,-6.51597 43.87917,-9.69007 43.87917,-9.69007 41.66521))",
 "TaxonKey is Eryngium viviparum J.Gay"
 ]
}

 The dataset includes 145 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025984-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7283/t5v98697
title: Plutons GPS Network
DOI: 10.15468/dl.sjwthb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphilius uranoscopus (Pfeffer, 1889)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025987-250525065834625/datasets/export for details.
DOI: 10.15468/dl.4s97zb
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neverita delessertiana (Récluz, 1843)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2005"
 ]
}

 The dataset includes 306 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025988-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7283/t5c53j2m
title: Africa Array GPS Network
title: ULUB-UNILU P.S.
DOI: 10.7283/t57d2scb
title: Africa Array GPS Network
title: UKAM-UNIKAM P.S.
DOI: 10.15468/dl.6mwguf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Laephotis robertsi (Goodman, Taylor, Ratrimomanarivo & Hoofer, 2012)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025989-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15603632
title: 20250605_Column_study_Tilman_RAW_1st_half
DOI: 10.5281/zenodo.15603633
title: 20250605_Column_study_Tilman_RAW_1st_half
DOI: 10.15468/dl.n7929c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphilius uranoscopus (Pfeffer, 1889)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025990-250525065834625/datasets/export for details.
DOI: 10.7283/t55b00ps
title: Mono Lake 2009
DOI: 10.15468/dl.g6u2gr
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.76666 41.7619,-6.77507 41.7619,-6.77507 44.38506,-9.76666 44.38506,-9.76666 41.7619))",
 "TaxonKey is Euphorbia uliginosa Welw. ex Boiss."
 ]
}

 The dataset includes 100 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025991-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szny53
title: Occurrence Download

description: A dataset containing 6186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opsanus beta (Goode & Bean, 1880)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2005"
 ]
}

 The dataset includes 6186 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025992-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29260469
title: Dataset of the article by <i>P. Cheng </i><i>& al</i>

description: Article submitted to <i>Nanoscale </i>titled "Aluminum Surface Lattice Resonances for Enhanced Near-Infrared Performance in Asymmetric Environments" By <i>Cheng & al.</i>
DOI: 10.6084/m9.figshare.29260469.v1
title: Dataset of the article by <i>P. Cheng </i><i>& al</i>

description: Article submitted to <i>Nanoscale </i>titled "Aluminum Surface Lattice Resonances for Enhanced Near-Infrared Performance in Asymmetric Environments" By <i>Cheng & al.</i>
DOI: 10.15472/cl4i6q
title: Colección Taxonómica Central del Museo Entomológico UNAB, familia Melolonthidae

description: El Museo Entomológico UNAB contiene cerca de 180.000 especímenes, con las siguientes características de conservación: 153.000 montados en alfiler y almacenados en 980 gavetas de madera tipo Cornell, ubicadas en seis paneles de compactadores y 395 cajas misceláneas en estanterías; 10.430 montadas en láminas: Coccomorpha (6.600 láminas), Collembola (1.700), Aphidomorpha (1400), Aleyrodomorpha (500), Thysanoptera (90), Acari (90), Psyllomorpha (50); 18.400 entre larvas y adultos, envasados en 4.600 frascos con alcohol, y 96 especímenes tipo montados en alfiler, que representan 46 especies. Aproximadamente, 20.000 especímenes se encuentran catalogados en la base digital de la Colección Taxonómica Central (CTC) del Museo UNAB, 17.000 de los cuales se encuentran identificados por especialistas, a nivel de género o especie. Dichas identificaciones representan un total de 4.000 especies, en 150 familias y 19 órdenes de insectos; así como siete especies de Acari en dos familias.
description: En el presente recuso se documenta información asociada a diferentes géneros y especies de la familia Melolonthidae recolectados entre 1940 y 2024 en diferentes zonas de Colombia. Todos los registros se encuentran actualmente depositados en el museo entomológico UNAB, de la Facultad de Ciencias Agrarias de la Universidad Nacional de Colombia, sede Bogotá. Se listan 4.146 registros biológicos de 71 géneros, 187 especies y 1 subespecie agrupados en las subfamilias Dynastinae, Melolonthinae, Rutelinae y Cetoniinae.
DOI: 10.15468/dl.3f2wuy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Neoromicia stanleyi Goodman, Kearney, Ratsimbazafy & Hassanin, 2017",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025993-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8vquhs
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.41644 41.58557,-6.28776 41.58557,-6.28776 44.01813,-9.41644 44.01813,-9.41644 41.58557))",
 "TaxonKey is Genista ancistrocarpa Spach"
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025995-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7283/t51c1v30
title: New Zealand Taupo Volcanic Zone 1993
DOI: 10.15468/dl.ht6w7w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphilius uranoscopus (Pfeffer, 1889)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025994-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15611015
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.5281/zenodo.15611447
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.5281/zenodo.15611452
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.5281/zenodo.15611468
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.5281/zenodo.15611014
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.5281/zenodo.15611612
title: Yolo Galaxy Test Images

description: Images used for testing Galaxy's YOLO tools
DOI: 10.7283/t5bk19kh
title: Antarctica Support 2004/2005
title: I-191 Dry Valleys Holocene Climate
DOI: 10.7283/t5319t47
title: Antarctica Support 2003/2004
title: I-191 Dry Valleys GPR
DOI: 10.7283/t56t0jw7
title: Antarctica Support 2005/2006
title: I-191 Dry Valleys Ice Coring
DOI: 10.15468/dl.ftfe4y
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pachygrapsus gracilis (de Saussure, 1857)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 2005"
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025996-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uyq83
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphilius uranoscopus (Pfeffer, 1889)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025997-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yrh936
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Laephotis stanleyi (Goodman, Kearney, Ratsimbazafy & Hassanin, 2017)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025998-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12083717
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.mvxgt5
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.29476 41.68706,-6.23962 41.68706,-6.23962 43.99557,-9.29476 43.99557,-9.29476 41.68706))",
 "TaxonKey is Hydrocharis morsus-ranae L."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025999-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9rqb4
title: Occurrence Download

description: A dataset containing 34092472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.93353 17.66668,-94.45295 17.66668,-94.45295 28.95082,-102.93353 28.95082,-102.93353 17.66668))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34092472 records from 2025 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025959-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb396p
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypsignathus monstrosus H.Allen, 1861"
 ]
}

 The dataset includes 380 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001718-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dedbbe
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalus suckleyi (Girard, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011110-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjdvna
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Padina australis Hauck"
 ]
}

 The dataset includes 91 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011111-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7dnqz
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erilepis zonifer (Lockington, 1880)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011112-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2rgar
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carum buriaticum Turcz."
 ]
}

 The dataset includes 25 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011113-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q43xcz
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Niphon spinosus Cuvier, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 185 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011114-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5xs5jv0j
title: MassIVE MSV000095242 - Serum metabolomics in schizophrenia
title: Twenty-nine patients with schizophrenia and 30 healthy controls were enrolled.
DOI: 10.15468/dl.qxzuge
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus setigerus (Vahl, 1797)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 396 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011115-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b32y8
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphioctopus fangsiao (d'Orbigny, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 257 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011116-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewj25d
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammodytes personatus Girard, 1856",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011117-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12636339
title: MADDD-seq, a novel massively parallel sequencing tool for simultaneous detection of DNA damage and mutations

description: The file "data.tar" contains the output of the MADDD-seq pipepline. There is one sub-folder per sample. For each sample, the most important files are:



max_variants_2.adduct.gtf : A GTF file with the location (and details) about each adduct called by the pipepline

max_variants_2.DSC.vcf.gz : A VCF (Variant Call File) with information about mutations called.

coverage.rds : pre-computed coverage information in binary format to be loaded in R.


To analyze this data, use the following R files: adducts.R, mutations.R and jason-function-2022-04.R

 

The file "kallisto-h5.tar"  contains the output of running Kallisto on the regular RNAseq data (for expression level analysis). To analyze this data, use the following R files: Yeast-MNNG-MGT.Rmd and myDESeq2.R

 

The source code of the R files will need to be modified to point at the location of files on the computer being used. These modifications are pointed by comments in the code and are located towards the start of each file.
DOI: 10.5281/zenodo.12636340
title: MADDD-seq, a novel massively parallel sequencing tool for simultaneous detection of DNA damage and mutations

description: The file "data.tar" contains the output of the MADDD-seq pipepline. There is one sub-folder per sample. For each sample, the most important files are:



max_variants_2.adduct.gtf : A GTF file with the location (and details) about each adduct called by the pipepline

max_variants_2.DSC.vcf.gz : A VCF (Variant Call File) with information about mutations called.

coverage.rds : pre-computed coverage information in binary format to be loaded in R.


To analyze this data, use the following R files: adducts.R, mutations.R and jason-function-2022-04.R

 

The file "kallisto-h5.tar"  contains the output of running Kallisto on the regular RNAseq data (for expression level analysis). To analyze this data, use the following R files: Yeast-MNNG-MGT.Rmd and myDESeq2.R

 

The source code of the R files will need to be modified to point at the location of files on the computer being used. These modifications are pointed by comments in the code and are located towards the start of each file.