cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cn38pbwn7r.1
title: COVID-ASSESS Italy - COVID19 related Anxiety and StreSs in prEgnancy, poSt-partum and breaStfeeding

description: The COVID-ASSESS questionnaire (COVID-19 related Anxiety and StreSs in prEgnancy, poSt-partum and breaStfeeding) was developed by Claudia Ravaldi (psychiatrist and psychotherapist) and Alfredo Vannacci (pharmacologist and epidemiologist) and uploaded as an online survey using the Surveymonkey platform (www.surveymonkey.com). The survey was distributed via CiaoLapo Foundation, an Italian charity for perinatal loss support, using existing networks and support groups across Italy. The network of CiaoLapo Foundation comprises women and couples affected by perinatal loss, as well as numerous associations, organizations and groups dealing with healthy pregnancy and perinatal health. Data were collected during phase 1 and phase 2 of COVID-19 lockdown in Italy (March, April and May 2020). Participants voluntarily self-selected to complete the survey. In order to address issues of women who were either pregnant, breastfeeding or caring for newborns or infants during COVID-19 lockdown, participants were considered eligible to complete the survey if over 18 and (a) currently pregnant or if (b) they gave birth after the 1st January 2019. Consent was provided at the start of the survey once participants had read the participant information and met the eligibility criteria. The survey was launched, and data collected during national COVID-19 lockdown in Italy. Human research ethical approval to conduct the survey was received from Florence University ethics committee (Prot. n. 006897). The survey consisted of questions across several key areas including: ●Sociodemographic information ●Section (A) anamnestic variables (comorbidities, previous losses, history of psychological disorders) ●Section (B) birth expectations before and after COVID-19 ●Section (C) concerns regarding pandemic consequences ●Section (D) breastfeeding ●Section (E) perception of media and health professionals’ information and communication on COVID-19 ●Section (F) psychometric evaluation. Women were also asked to provide three words to describe their expectations for their birth experiences before and after the onset of the COVID-19 pandemic. COVID-ASSESS raw data are shared under CC BY NC 3.0. You are free to use data for scientific research, providing you attribute appropriately and do not use the material for commercial purposes. Any publication derived from the use of these data must cite this dataset, and must be shared and discussed before submission with the members of COVID-ASSESS steering committee, Claudia Ravaldi and Alfredo Vannacci (PeaRL Perinatal Research Laboratory, University of Florence and CiaoLapo Foundation for Perinatal Health) who must be included as co-authors in all publications using data derived from COVID-ASSESS survey.
DOI: 10.17632/8dk5vy7m7v.6
title: MATLAB CODES OF SEARCH IN FOREST OPTIMIZER

description: MATLAB CODES OF SEARCH IN FOREST (SIFO) OPTIMIZER INCLUDED STANDARD FUNCTION TEST
DOI: 10.6084/m9.figshare.8148146
title: MOESM1 of Genetic diversity of Nyssorhynchus (Anopheles) darlingi related to biting behavior in western Amazon

description: Additional file 1. Per-individual An. darlingi detail of the number of sequence reads and unique stacks genotyped.
DOI: 10.17632/6mr8m35szg.1
title: Out-of-Pocket vs. Out-of-Investment in Financial Advisory Fees: Evidence from the Lab

description: Generally speaking, this research project attempts to study how different methods of payments affect consumers’ willingness to pay for a product. While the question is relevant to all sorts of products we confine our attention here to products involving uncertainty - specifically to the willingness to pay for financial advice. The assignment of payment through a checking account vs. through an investment portfolio causes a decrease of 25 percent in subjects’ valuation of financial advisory services. Most of this gap in the willingness to pay can be attributed to the deferral of payment until after the outcome of the investment is revealed. Our results highlight the difference between post-service and pre-service payments in a broader context, and provide an explanation for why allowing late payment, after the service has been performed and its outcome revealed, may increase the ex-ante willingness to pay for the service. A description of relevant data needed to replicate our analysis is reported in the attached file.
DOI: 10.6084/m9.figshare.8148146.v1
title: MOESM1 of Genetic diversity of Nyssorhynchus (Anopheles) darlingi related to biting behavior in western Amazon

description: Additional file 1. Per-individual An. darlingi detail of the number of sequence reads and unique stacks genotyped.
DOI: 10.6084/m9.figshare.8148107
title: Additional file 6: of The multifactorial nature of beak and skull shape evolution in parrots and cockatoos (Psittaciformes)

description: Zipped folder containing supplementary data files and code. BrightetalParrotsGM.R: R script used for running analysis. R input data: Ccarolinensis.ply; EltonTraits1.csv; landpairs.txt; NewParrots.tre; parrot.lms.txt; Parrot_preSlide.txt; ParrotGroups.csv; sliders.txt. (ZIP 2110 kb)
DOI: 10.6084/m9.figshare.8148107.v1
title: Additional file 6: of The multifactorial nature of beak and skull shape evolution in parrots and cockatoos (Psittaciformes)

description: Zipped folder containing supplementary data files and code. BrightetalParrotsGM.R: R script used for running analysis. R input data: Ccarolinensis.ply; EltonTraits1.csv; landpairs.txt; NewParrots.tre; parrot.lms.txt; Parrot_preSlide.txt; ParrotGroups.csv; sliders.txt. (ZIP 2110 kb)
DOI: 10.6084/m9.figshare.8148098
title: MOESM3 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 3. Crystallographic information file of trans-1b.
DOI: 10.6084/m9.figshare.8148098.v1
title: MOESM3 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 3. Crystallographic information file of trans-1b.
DOI: 10.6084/m9.figshare.8148092
title: MOESM2 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 2. Crystallographic information file of cis-1b.
DOI: 10.6084/m9.figshare.8148092.v1
title: MOESM2 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 2. Crystallographic information file of cis-1b.
DOI: 10.6084/m9.figshare.8148083
title: MOESM1 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 1. Crystallographic information file of 1a.
DOI: 10.6084/m9.figshare.8148083.v1
title: MOESM1 of Crystal structures of three cyclohexane-based Îł-spirolactams: determination of configurations and conformations

description: Additional file 1. Crystallographic information file of 1a.
DOI: 10.6084/m9.figshare.8148020
title: Additional file 3: of The kinase inhibitor SI113 induces autophagy and synergizes with quinacrine in hindering the growth of human glioblastoma multiforme cells

description: Table S2.Â Raw RPPA data. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.8148020.v1
title: Additional file 3: of The kinase inhibitor SI113 induces autophagy and synergizes with quinacrine in hindering the growth of human glioblastoma multiforme cells

description: Table S2.Â Raw RPPA data. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.8147966
title: Additional file 6: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Zebrafish miRNA list. List of differentially expressed miRNA in zebrafish after treatment with BAP. (TXT 1305 kb)
DOI: 10.6084/m9.figshare.8147966.v1
title: Additional file 6: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Zebrafish miRNA list. List of differentially expressed miRNA in zebrafish after treatment with BAP. (TXT 1305 kb)
DOI: 10.6084/m9.figshare.8147957
title: Additional file 5: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: HBEC miRNA list. List of differentially expressed miRNA in HBEC after treatment with BAP. (TXT 953 bytes)
DOI: 10.6084/m9.figshare.8147957.v1
title: Additional file 5: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: HBEC miRNA list. List of differentially expressed miRNA in HBEC after treatment with BAP. (TXT 953 bytes)
DOI: 10.6084/m9.figshare.8147945
title: Additional file 4: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Human-zebrafish integration BRM output. Output from BRM after integrating human and zebrafish mRNA files using the Integrate Tables feature. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8147945.v1
title: Additional file 4: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Human-zebrafish integration BRM output. Output from BRM after integrating human and zebrafish mRNA files using the Integrate Tables feature. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8147936
title: Additional file 3: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Zebrafish mRNA list. List of differentially expressed mRNA in zebrafish after treatment with BAP. (TXT 33 kb)
DOI: 10.6084/m9.figshare.8147936.v1
title: Additional file 3: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: Zebrafish mRNA list. List of differentially expressed mRNA in zebrafish after treatment with BAP. (TXT 33 kb)
DOI: 10.6084/m9.figshare.8147927
title: Additional file 2: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: HBEC mRNA list. List of differentially expressed mRNA in HBEC after treatment with BAP. (TXT 336 kb)
DOI: 10.6084/m9.figshare.8147927.v1
title: Additional file 2: of Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

description: HBEC mRNA list. List of differentially expressed mRNA in HBEC after treatment with BAP. (TXT 336 kb)
DOI: 10.6084/m9.figshare.8147873
title: MOESM3 of MALDI-TOF mass spectrometry as a diagnostic tool in human and veterinary helminthology: a systematic review

description: Additional file 3. List of references included in the final review (n = 84 articles).
DOI: 10.6084/m9.figshare.8147873.v1
title: MOESM3 of MALDI-TOF mass spectrometry as a diagnostic tool in human and veterinary helminthology: a systematic review

description: Additional file 3. List of references included in the final review (n = 84 articles).
DOI: 10.6084/m9.figshare.8146283
title: Dataset_BeringSea.zip

description: File labeled 'Dataset_BeringSea.zip' is the minimal underlying in situ plankton dataset of Bering Sea used for the validation of enhanced CNN proposed by us. All the raw images were acquired by ZOOVIS in the southeastern Bering Sea in May 2017.This dataset contains a training set and a testing set, and both of them contain 7 classes (chaetognatha, copepoda, medusae, euphausiids, fish larvae, limacina and other). In addition, there are 2048 samples in the training set and 512 samples in the testing set for each class. And other files are the data used to validate the Enhanced CNN model proposed by us.
DOI: 10.6084/m9.figshare.8146283.v1
title: Dataset_BeringSea.zip

description: This is the minimal underlying in situ plankton dataset of Bering Sea used for the validation of enhanced CNN proposed by us. All the raw images were acquired by ZOOVIS in the southeastern Bering Sea in May 2017.This dataset contains a training set and a testing set, and both of them contain 7 classes (chaetognatha, copepoda, medusae, euphausiids, fish larvae, limacina and other). In addition, there are 2048 samples in the training set and 512 samples in the testing set for each class.
DOI: 10.6084/m9.figshare.8146283.v2
title: Dataset_BeringSea.zip

description: This is the minimal underlying in situ plankton dataset of Bering Sea used for the validation of enhanced CNN proposed by us. All the raw images were acquired by ZOOVIS in the southeastern Bering Sea in May 2017.This dataset contains a training set and a testing set, and both of them contain 7 classes (chaetognatha, copepoda, medusae, euphausiids, fish larvae, limacina and other). In addition, there are 2048 samples in the training set and 512 samples in the testing set for each class.
DOI: 10.6084/m9.figshare.8146208
title: Carbon Dioxide Photoionization Delay Time Raw Data

description: This is the raw experimental data used to report photoionization delay times of Carbon Dioxide. This is the data used in the 2019 report from the Cryan group which presented attosecond scale time domain measurements of photoionization from carbon dioxide, through a molecular shape resonance and through auto-ionizing Rydberg states.
DOI: 10.6084/m9.figshare.8146208.v1
title: Carbon Dioxide Photoionization Delay Time Raw Data

description: This is the raw experimental data used to report photoionization delay times of Carbon Dioxide. This is the data used in the 2019 report from the Cryan group which presented attosecond scale time domain measurements of photoionization from carbon dioxide, through a molecular shape resonance and through auto-ionizing Rydberg states.
DOI: 10.6084/m9.figshare.8146112
title: Selected Papers _Final

description: Privacy and Security in Requirements Engineering: Results from a Systematic Literature Mapping
DOI: 10.6084/m9.figshare.8146112.v1
title: Selected Papers _Final

description: Privacy and Security in Requirements Engineering: Results from a Systematic Literature Mapping
DOI: 10.6084/m9.figshare.8146076
title: Single-step genome-wide association study for resistance to Piscirickettsia salmonis in rainbow trout (Oncorhynchus mykiss)

description: These files correspond to the supplementary material of the scientific article entitled "Single-step genome-wide association study for resistance to Piscirickettsia salmonis in rainbow trout (Oncorhynchus mykiss)"
DOI: 10.6084/m9.figshare.8146073
title: hsp65_ESV_table.csv.zip

description: Data generated for marker gene analysis of a region of the hsp65 gene specifically targeting mycobacteria. For detailed PCR and sequence methods, see Gebert <i>et al</i> 2018. Briefly, a two-step PCR approach was used with mycobacterial-specific primers, and with the resulting amplicons (~400 bp) sequenced on the Illumina MiSeq platform. The sequence reads were processed using the uSEARCH pipeline. Exact sequence variants (ESVs) were identified using uNOISE3, and clustered into clades via phylogenetic patristic distance (RAMI).
DOI: 10.6084/m9.figshare.8146073.v1
title: hsp65_ESV_table.csv.zip

description: Data generated for marker gene analysis of a region of the hsp65 gene specifically targeting mycobacteria. For detailed PCR and sequence methods, see Gebert <i>et al</i> 2018. Briefly, a two-step PCR approach was used with mycobacterial-specific primers, and with the resulting amplicons (~400 bp) sequenced on the Illumina MiSeq platform. The sequence reads were processed using the uSEARCH pipeline. Exact sequence variants (ESVs) were identified using uNOISE3, and clustered into clades via phylogenetic patristic distance (RAMI).
DOI: 10.6084/m9.figshare.8146064
title: Source Data.zip

description: This contains the data used to generate the figures in Ju et al. 2019.
DOI: 10.6084/m9.figshare.8146064.v1
title: Source Data.zip

description: This contains the data used to generate the figures in Ju et al. 2019.
DOI: 10.6084/m9.figshare.8146061
title: 16S_OTU_table.txt.zip

description: The V3-V4 hypervariable region of the bacterial 16SrRNA gene was amplified with 341F/805R primers. For detailed sequencing methods, see Delgado-Baquerizo et al 2018. Data were processed using the USEARCH10 pipeline. Unique sequences were identified using usearch10 -fastx_uniques, and clustered at 97% identity to “Operational Taxonomic Units” (OTUs) with usearch10. <br>
DOI: 10.6084/m9.figshare.8146058
title: 16S_repset.fa.zip

description: Representative 16S rRNA sequences. The V3-V4 hypervariable region of the bacterial 16SrRNA gene was amplified with 341F/805R primers. For detailed sequencing methods, see Delgado-Baquerizo et al 2018. Data were processed using the USEARCH10 pipeline. Unique sequences were identified using usearch10 -fastx_uniques, and clustered at 97% identity to “Operational Taxonomic Units” (OTUs) with usearch10.
DOI: 10.6084/m9.figshare.8145971
title: Supp_Table_1_Final.xlsx

description: Proteomics profiling and comparison of radioresistant to radiosensitive HNSCCs
DOI: 10.6084/m9.figshare.8145971.v1
title: Supp_Table_1_Final.xlsx

description: Proteomics profiling and comparison of radioresistant to radiosensitive HNSCCs
DOI: 10.6084/m9.figshare.8145962
title: Gonzalez-Rubio et al., 2019 -Explicit Temporal Control

description: The data supporting the conclusions of the manuscript ("Explicit control of step timing during split-belt walking reveals interdependent recalibration of movements in space and time") are available in this data set (https://doi.org/10.3389/fnhum.2019.00207). More information on how to reproduce the Figures from the article can be found in OSF (https://osf.io/eq6f9/). <br>Here is a list of the names of the parameters in the code and their corresponding names in the paper: 'Sout' -&gt; 'Sout', 'Tout' -&gt; 'Tout', 'Serror' -&gt; 'Leg Orientation Asymmetry (SA)', 'Terror' -&gt; 'DS Time,Asymmetry (TA)', 'Sgoal' -&gt; 'Range of Motion Asymmetry (SnA)', 'Tgoal' -&gt; 'Stance Time Asymmetry (TnA)'. <br>Name correspondence in the code for the groups: 'StepTimeStudyControl' -&gt; 'Control', 'StepTimeStudy' -&gt; 'Temporal Feedback', 'AlphaFeedback' -&gt; 'Spatial Feedback'.<br>Name correspondence in the code for the epochs: 'InitialWash' -&gt; 'After-Effects', 'TMsteady' -&gt; 'Steady State'.<br>The data provided here is a Matlab group object file (.mat). Once it is loaded to the workspace of the software, it will be organized by groups. Each group has the ID for each subject in a 1x7 cell (each column will be a subject), and the column number will be the same for the individual data which can be found in the 1x7 cell called "adaptData".<br>On each subjects' adaptData there is information on the experiment ("metaData"), information on the subject ("subData"), and all the experiment measured parameters ("data"). <br>Inside of each subjects' data you can find each one of the parameters names previously defined that were used in the paper under ("Data"). The matrix with the data is a nx187 where the rows represent the strides and the columns the parameters. You can find the column that correspond to your parameter by looking into "labels" and we also provide explanations on the computations in "description".<br>
DOI: 10.6084/m9.figshare.8145962.v1
title: ExplicitTemporal&SpatialModulations.mat

description: Dataset available for the manuscript "Explicit control of step timing during split-belt walking reveals interdependent recalibration of movements in space and time"<br><br>
DOI: 10.6084/m9.figshare.8145962.v2
title: Gonzalez-Rubio et al., 2019 -Explicit Temporal Control

description: Dataset available for the manuscript "Explicit control of step timing during split-belt walking reveals interdependent recalibration of movements in space and time"<br><br>
DOI: 10.6084/m9.figshare.8145926
title: Springall et al. 2019 Datasheets.xlsx

description: The following datasheets pertain to a study on bat in-flight social calls using passive acoustic monitoring. Recordings were collected using four Song Meter SM4 (Wildlife Acoustics) detectors at different sites in Greensboro, NC, USA.<br>-Species_Identification: Files containing one or more bat in-flight social calls, listing the species diagnosis based on manual identification and automatic identification, with the match rations from automatic identification<br>-Identified_Social_Calls: Individual social calls within the files listed in "Species Identification"<br>-Call_Intervals_And_Context: Information on the context of a subset of the social calls from "Identified_Social_Calls."<br>-Call_Measurements: Spectral and temporal characteristics of social calls measured using SASLab Pro (Avisoft Bioacoustics)<br>-Call_Bouts: Temporal clusters of social calls, with variables describing the social calls contained and the context in which they were produced<br>-Hourly_Bat_Activity: How many bat passes were detected per hour after sunset for each detector night sampled, and whether or not at least one social call was recorded during that hour<br>-Bat_Activity: All recordings used in this study.
DOI: 10.6084/m9.figshare.8145926.v1
title: Springall et al. 2019 Datasheets.xlsx

description: The following datasheets pertain to a study on bat in-flight social calls using passive acoustic monitoring. Recordings were collected using four Song Meter SM4 (Wildlife Acoustics) detectors at different sites in Greensboro, NC, USA.<br>-Species_Identification: Files containing one or more bat in-flight social calls, listing the species diagnosis based on manual identification and automatic identification, with the match rations from automatic identification<br>-Identified_Social_Calls: Individual social calls within the files listed in "Species Identification"<br>-Call_Intervals_And_Context: Information on the context of a subset of the social calls from "Identified_Social_Calls."<br>-Call_Measurements: Spectral and temporal characteristics of social calls measured using SASLab Pro (Avisoft Bioacoustics)<br>-Call_Bouts: Temporal clusters of social calls, with variables describing the social calls contained and the context in which they were produced<br>-Hourly_Bat_Activity: How many bat passes were detected per hour after sunset for each detector night sampled, and whether or not at least one social call was recorded during that hour<br>-Bat_Activity: All recordings used in this study.
DOI: 10.6084/m9.figshare.8145704.v1
title: Bayesian optimal design for ordinary differential equation models with application in biological science

description: Bayesian optimal design is considered for experiments where the response distribution depends on the solution to a system of non-linear ordinary differential equations. The motivation is an experiment to estimate parameters in the equations governing the transport of amino acids through cell membranes in human placentas. Decision-theoretic Bayesian design of experiments for such nonlinear models is conceptually very attractive, allowing the formal incorporation of prior knowledge to overcome the parameter dependence of frequentist design and being less reliant on asymptotic approximations. However, the necessary approximation and maximization of the, typically analytically intractable, expected utility results in a computationally challenging problem. These issues are further exacerbated if the solution to the differential equations is not available in closed-form. This paper proposes a new combination of a probabilistic solution to the equations embedded within a Monte Carlo approximation to the expected utility with cyclic descent of a smooth approximation to find the optimal design. A novel precomputation algorithm reduces the computational burden, making the search for an optimal design feasible for bigger problems. The methods are demonstrated by finding new designs for a number of common models derived from differential equations, and by providing optimal designs for the placenta experiment.
DOI: 10.6084/m9.figshare.8144522
title: Table S1 Sequences of the Primers.docx

description: Sequences of the Primers
DOI: 10.6084/m9.figshare.8144519
title: Table S2 Arterial blood gas analysis of rats.docx

description: Arterial blood gas analysis of rats.