cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23551917.v1
title: 13 Nwestbladi. PFAM annotation. HiFi

description: Functional annotation of the genome of Nemertoderma westbladi sequenced with HiFi. All annotated gene models were annotated with the PFAM database.
DOI: 10.6084/m9.figshare.23508834
title: 01 Nwestbladi genome. Raw assembly. HiFi

description: Assembly of the genome sequenced with Hifi of Nemertoderma westbladi. After cleaning the reads, these were assembled with Flye (default parameters, but the "--meta" option activated) followed by redundancy removal with kmerDedup
DOI: 10.25810/q1-ts57.36
title: Russian Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.23508840
title: 02 Nwestbladi genome. Decontaminated assembly. HiFi

description: Assembly of the genome sequenced with Hifi of Nemertoderma westbladi after the decontamination with BlobTools.
DOI: 10.6084/m9.figshare.23508882
title: 05 Nwestbladi. Annotated proteins. Amino acids. HiFi genome

description: Gene models (in amino acids) annotated in the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.25810/37f9-1j65.65
title: Spanish Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.23508876
title: 04 Nwestbladi. Decontaminated genome. Softmasked. HiFi

description: Genome of Nemertoderma westbladi sequenced with HiFi. This is like the decontaminated genome, but the repeat content has been softmasked.
DOI: 10.25810/qt7k-6r09.52
title: Swedish Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.23508885
title: 06 Nwestbladi. Annotated proteins. Nucleotides. HiFi genome

description: Gene models (in nucleotides) annotated in the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508885.v1
title: 06 Nwestbladi. Annotated proteins. Nucleotides. HiFi genome

description: Gene models (in nucleotides) annotated in the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508846
title: 03 Reads mapped to the decontaminated genome in fastq format. HiFi genome

description: HiFi reads generated from Nemertoderma westbladi. They have been (kind of) cleaned from contaminations by mapping them to the decontaminated genome.
DOI: 10.25810/8196-e820.66
title: United Kingdom Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.48324/dandi.000628/0.230922.1642
title: Extracellular recording along macaque ventral stream during natural image free viewing

description: Recordings spanning six areas in the macaque ventral stream (V1, V2 ,V4, PIT, CIT, AIT; primarily in CIT and AIT) including 679 experimental sessions, 883 hours, 13 monkeys, 4.6 million fixations, and thousands of natural images. For more information, see the preprint at https://doi.org/10.1101/2023.02.08.527666
DOI: 10.25810/jck1-hf50.65
title: United States Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/c862-0e81.65
title: US Television Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 130 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.8370515
title: Humans enhance visuo-haptic perception by modulating impedance relative to their motion plan

description: Datasets and analysis code of the following manuscript: X. Cheng, S. Shen, E. Ivanova, G. Carboni, A. Takagi, E. Burdet. Humans enhance visuo-haptic perception by modulating impedance relative to their motion plan. <strong>Contents:</strong> 1. Codes<br> - data processing: this folder contains all the codes in Matlab and R needed for the data pre-processing, analysis, visualisation and statistics. <br> - model: this folder contains the computational modelling codes in Matlab. 2. Data: all the data in three experiments are included here<br> - amplitude experiment: 22-subject data for visual and haptic feedback - frequency experiment: 8-subject data with two visual noise level and three different frequencies of haptic perturbation - sole sensing experiment: 13- subject data with either visual feedback or haptic feedback with different levels of noise. 3. Figures: the figures used in the manuscript.
DOI: 10.5281/zenodo.8370514
title: Humans enhance visuo-haptic perception by modulating impedance relative to their motion plan

description: Datasets and analysis code of the following manuscript: X. Cheng, S. Shen, E. Ivanova, G. Carboni, A. Takagi, E. Burdet. Humans enhance visuo-haptic perception by modulating impedance relative to their motion plan. <strong>Contents:</strong> 1. Codes<br> - data processing: this folder contains all the codes in Matlab and R needed for the data pre-processing, analysis, visualisation and statistics. <br> - model: this folder contains the computational modelling codes in Matlab. 2. Data: all the data in three experiments are included here<br> - amplitude experiment: 22-subject data for visual and haptic feedback - frequency experiment: 8-subject data with two visual noise level and three different frequencies of haptic perturbation - sole sensing experiment: 13- subject data with either visual feedback or haptic feedback with different levels of noise. 3. Figures: the figures used in the manuscript.
DOI: 10.25810/4c3b-b819.65
title: World Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/k55w-7a04.65
title: World Radio Coverage of Climate Change or Global Warming, 2000-2023 - August 2023

description: The Media and Climate Change Observatory Data monitors 130 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.24175485
title: Lists of genes from PAO1 TnSeq Assay Miles Manuscript

description: Tables of genes from TnSeq analysis of Pseudomonas aeruginosa following oral infection of Drosophila melanogaster. Tables include:Table S1: List of P. aeruginosa genes that had no insertions in the input library. Table S2: List of genes depleted during the initial feeding.Table S3: List of putative colonization factors.Table S4: List of colonization-specific factors.Table S5: P. aeurginosa genes overrepresented in the fly.
DOI: 10.25810/rhcc-cr35
title: Media and Climate Change Observatory Monthly Summary: The latest major climate disaster to wreak havoc - Issue 80, August 2023

description:         August media coverage of climate change or global warming in newspapers around the globe dropped 8% from July 2023 and was also 3% lower than August 2022 levels. International wire services went down 11% from July 2023. Compared to the previous month, coverage dipped in Africa (-1%), Asia (-8%), the Middle East (-10%), the European Union (EU) (-15%), and in Latin America (-17%). Meanwhile, coverage increased from the previous month of July in North America (+5%), and in Oceania (+21%). Figure 1 shows trends in newspaper media coverage at the global scale – organized into seven geographical regions around the world – from January 2004 through August 2023.
DOI: 10.6084/m9.figshare.23551896
title: 20 Nwestbladi. Annotation file. GFF3. Illumina genome

description: Annotation (in format GFF3) of the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23508897
title: 08 Nwestbladi. Annotation file. GTF. HiFi genome

description: Annotation (in format GTF) of the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508897.v1
title: 08 Nwestbladi. Annotation file. GTF. HiFi genome

description: Annotation (in format GTF) of the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508891
title: 07 Nwestbladi. Annotation file. GFF3. HiFi genome

description: Annotation (in format GFF3) of the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508900
title: 09 Nwestbladi. Details of the repeat content. HiFi

description: Repeat content annotated in the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508900.v1
title: 09 Nwestbladi. Details of the repeat content. HiFi

description: Repeat content annotated in the genome of Nemertoderma westbladi sequenced with HiFi
DOI: 10.6084/m9.figshare.23508909
title: 10 Nwestbladi. BUSCO completeness report. Metazoa. HiFi

description: Results of the BUSCO analysis over the genome of Nemertoderma westbladi sequenced with HiFi. The database was Metazoa_odb10
DOI: 10.6084/m9.figshare.23508909.v1
title: 10 Nwestbladi. BUSCO completeness report. Metazoa. HiFi

description: Results of the BUSCO analysis over the genome of Nemertoderma westbladi sequenced with HiFi. The database was Metazoa_odb10
DOI: 10.6084/m9.figshare.23508915.v1
title: 11 Nwestbladi. BUSCO completeness report. Eukaryota. HiFi

description: Results of the BUSCO analysis from the genome of Nemertoderma westbladi sequenced with HiFi. The database was Eukaryota_odb10
DOI: 10.6084/m9.figshare.23508915
title: 11 Nwestbladi. BUSCO completeness report. Eukaryota. HiFi

description: Results of the BUSCO analysis from the genome of Nemertoderma westbladi sequenced with HiFi. The database was Eukaryota_odb10
DOI: 10.6084/m9.figshare.23790024
title: The complete chloroplast genome sequence of <i>Crepidomanes latealatum</i> (Bosch) Copel

description: The complete chloroplast genome sequence of <i>Crepidomanes latealatum</i> (Bosch) Copel. was determined in the present study. The genome is 145,943 base pairs (bp) in length and comprised two inverted repeats (32,990 bp) between a large single copy (92,170 bp) and a small single copy (20,783 bp). It contains 88 coding genes, 8 rRNA genes, 34 tRNA genes, and 1 pseudogene of <i>trnL-UAA,</i> and the GC content is 37.6%. Molecular phylogenetic analysis based on the plastid genome sequences of related taxa strongly supported the monophyly of the family Hymenophyllaceae, and the genus <i>Vandenboschia</i> was a sister group of <i>Crepidomanes</i>. In addition, compared to <i>C. minutum,</i> two large deletions of 453 bp and 878 bp were found in the IGS regions of <i>petA-psbI</i> and rrn16-trnV-GAC of <i>C. latealatum</i> cp genome, respectively.
DOI: 10.6084/m9.figshare.23790024.v1
title: The complete chloroplast genome sequence of <i>Crepidomanes latealatum</i> (Bosch) Copel

description: The complete chloroplast genome sequence of <i>Crepidomanes latealatum</i> (Bosch) Copel. was determined in the present study. The genome is 145,943 base pairs (bp) in length and comprised two inverted repeats (32,990 bp) between a large single copy (92,170 bp) and a small single copy (20,783 bp). It contains 88 coding genes, 8 rRNA genes, 34 tRNA genes, and 1 pseudogene of <i>trnL-UAA,</i> and the GC content is 37.6%. Molecular phylogenetic analysis based on the plastid genome sequences of related taxa strongly supported the monophyly of the family Hymenophyllaceae, and the genus <i>Vandenboschia</i> was a sister group of <i>Crepidomanes</i>. In addition, compared to <i>C. minutum,</i> two large deletions of 453 bp and 878 bp were found in the IGS regions of <i>petA-psbI</i> and rrn16-trnV-GAC of <i>C. latealatum</i> cp genome, respectively.
DOI: 10.6084/m9.figshare.23715384
title: Complete chloroplast genome of two nutmeg species, <i>Myristica argentea</i> Warb. 1891 and <i>Myristica fatua</i> Houtt. 1774 (Myristicaceae)

description: <i>Myristica argentea</i> Warb. 1891 and <i>M. fatua</i> Houtt. 1774 are two South-East Asian food tree species. They are harvested from the wild or cultivated for local uses as a condiment (nutmeg and mace), medicine, and source of wood. In this study, we reconstructed the complete chloroplast (cp) genomes of these two species from whole genome sequencing data using the Illumina NovaSeq platform. The genome sizes of <i>M. argentea</i> and <i>M. fatua</i> were respectively 155,871 base pairs (bp) and 155,898 bp, including 126 genes and an overall GC content of 39.20% in both species. Our study provides useful resources for future evolutionary research and diversity analysis of <i>Myristica</i> species.
DOI: 10.6084/m9.figshare.23715384.v1
title: Complete chloroplast genome of two nutmeg species, <i>Myristica argentea</i> Warb. 1891 and <i>Myristica fatua</i> Houtt. 1774 (Myristicaceae)

description: <i>Myristica argentea</i> Warb. 1891 and <i>M. fatua</i> Houtt. 1774 are two South-East Asian food tree species. They are harvested from the wild or cultivated for local uses as a condiment (nutmeg and mace), medicine, and source of wood. In this study, we reconstructed the complete chloroplast (cp) genomes of these two species from whole genome sequencing data using the Illumina NovaSeq platform. The genome sizes of <i>M. argentea</i> and <i>M. fatua</i> were respectively 155,871 base pairs (bp) and 155,898 bp, including 126 genes and an overall GC content of 39.20% in both species. Our study provides useful resources for future evolutionary research and diversity analysis of <i>Myristica</i> species.
DOI: 10.6084/m9.figshare.23551890
title: 12 Nwestbladi. Phylogenomics. Alignments and Genetrees

description: Alignments and the derived gene trees of all the orthogroups used to check the Nemertoderma genome does not show symptoms of contamination.
DOI: 10.6084/m9.figshare.23551890.v1
title: 12 Nwestbladi. Phylogenomics. Alignments and Genetrees

description: Alignments and the derived gene trees of all the orthogroups used to check the Nemertoderma genome does not show symptoms of contamination.
DOI: 10.6084/m9.figshare.23551899
title: 19 Nwestbladi. Annotated proteins. Nucleotides. Illumina genome

description: Gene models (in nucleotides) annotated in the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.21429/j09b-7081
title: Locations of fire promoting alien plants across the islands of Hawaii based on field surveys and museum collections

description: Previous research identified species of invasive plants in Hawai'i which are highly flammable and act as fuels in wildfires across Hawai'i. This work aimed to map the distribution of these species (largely grasses) around the islands of Hawai'i with the goal of using the locations for species distribution modeling. All data represents presence data, no absence data were recorded. Data are largely from within the past 20 years, but some georeferenced herbarium specimens go as far back as 1905.

Data were obtained from georeferenced herbarium specimens, vegetation plot data, citizen science data (iNaturalist) reviewed by the authors, and data from roadside surveys conducted as part of this research to map these species. Existing georeferenced herbarium data was used and ~600 specimens were georeferenced for the first time as part of this research. Data were manually reviewed to remove points which were georeferenced incorrectly or were likely misidentified.

These data to not represent the complete distribution of these grasses in Hawai'i as many areas were not surveyed, especially on Hawai'i island.
DOI: 10.6084/m9.figshare.23551902
title: 18 Nwestbladi. Annotated proteins. Amino acids. Illumina genome

description: Gene models (in amino acids) annotated in the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.23551905
title: 17 Nwestbladi genome. Decontaminated assembly. Illumina

description: Assembly of the genome sequenced with Illumina of Nemertoderma westbladi after the decontamination with BlobTools.
DOI: 10.6084/m9.figshare.23551908
title: 16 Nwestbladi genome. Raw assembly. Illumina

description: Assembly of the genome sequenced with Hifi of Nemertoderma westbladi. After cleaning the reads, these were assembled with SPAdes (with four kmer lengths (21, 33, 55, 75) and error correction activated)
DOI: 10.21429/ydvg-cj32
title:  Fire Risk Scores from Predictive Model Based on Flammability and Fire Ecology of Non-Native Hawaiian Plants from 2020-2021

description: We developed a screening system to identify introduced plant species that are likely to increase wildfire risk, using the Hawaiian Islands to test the system and illustrate how the system can be applied to inform management decisions. Expert-based fire risk scores derived from field experiences with 49 invasive species in Hawai′i were used to train a machine learning model that predicts expert fire risk scores from among 21 plant traits obtained from literature and databases. The model revealed that just four variables can identify species categorized as higher fire risk by experts with 90% accuracy, while low risk species were identified with 79% accuracy. We then used the predictive model to screen 365 naturalized plants in Hawai′i focusing on recent invaders. Data were also collected on species post-fire regeneration strategies.
DOI: 10.34740/kaggle/dsv/6520607
title: Corups Kabyle
DOI: 10.6084/m9.figshare.24183246
title: MCMC samples

description: Results from MCMC chains generated with scripts from this repo.<br>Please note that this a zip-compressed files.<br>Disk usage for the different files after unpacking:<br>- main_results: 2.9GB<br>- sensitivity_analysis: 23GB<br>- simulation_study: 68GB<br>- simulation_diffusion: 69GB<br>________________Therefore, ~165GB disk space will be allocated<br><br>
DOI: 10.1184/r1/23805552
title: Dataset of Manipulations on the Tennessee Eastman Process

description: This dataset contains manipulated outputs from the Tennesse Eastman Process (TEP), an anonymized chemical process. <br> To produce each manipulated output, the value of a single TEP feature modified for two hours. The subsequent TEP response is recorded. <br> In total, 286 manipulations are performed and recorded: each manipulation varies in (i) its magnitude, (ii) the pattern of the manipulation, and (iii) which TEP feature was manipulated.
DOI: 10.1184/r1/23805552.v1
title: Dataset of Manipulations on the Tennessee Eastman Process

description: This dataset contains manipulated outputs from the Tennesse Eastman Process (TEP), an anonymized chemical process. <br> To produce each manipulated output, the value of a single TEP feature modified for two hours. The subsequent TEP response is recorded. <br> In total, 286 manipulations are performed and recorded: each manipulation varies in (i) its magnitude, (ii) the pattern of the manipulation, and (iii) which TEP feature was manipulated.
DOI: 10.6084/m9.figshare.24184299
title: <b>Silicone oil versus gas tamponade for the management of primary uncomplicated rhegmatogenous retinal detachment</b>

description: Data collecting preoperative and postoperative details
DOI: 10.6084/m9.figshare.24184299.v1
title: <b>Silicone oil versus gas tamponade for the management of primary uncomplicated rhegmatogenous retinal detachment</b>

description: Data collecting preoperative and postoperative details
DOI: 10.5281/zenodo.5759086
title: Additional QCD Background Events for LHCO2020 R&D (signal region only)

description: These are an additional ~610k QCD dijet background events, in the "signal region" region only (meaning, with mJJ in the range 3.3-3.7 TeV), produced using the same simulation settings as those of the LHCO2020 R&D Dataset. The features are as described at that link: 'pxj1', 'pyj1', 'pzj1', 'mj1', 'tau1j1', 'tau2j1', 'tau3j1', 'pxj2', 'pyj2', 'pzj2', 'mj2', 'tau1j2', 'tau2j2', 'tau3j2' They were used in CATHODE for training the idealized anomaly detector and supervised classifier, as well as for final evaluation of all the anomaly detection methods. <strong>Update September 22, 2023</strong> An additional file was uploaded that contains the momentum 3-vectors of all the particles in each event, in addition to the 14 high level features listed above. As in the original LHCO R&D dataset, up to 700 particles are included, with zero padding for events with fewer than 700 particles. So the shape of the dataset is <pre>(612858, 2114)</pre> with the first 2100 entries corresponding to the 3-momenta, in the order px0,py0,pz0,px1,py1,pz1,...,px699,py699,pz699; and the last 14 entries corresponding to the high level features listed above.
DOI: 10.5281/zenodo.5759087
title: Additional QCD Background Events for LHCO2020 R&D (signal region only)

description: These are an additional ~610k QCD dijet background events, in the "signal region" region only (meaning, with mJJ in the range 3.3-3.7 TeV), produced using the same simulation settings as those of the LHCO2020 R&D Dataset. The features are as described at that link: 'pxj1', 'pyj1', 'pzj1', 'mj1', 'tau1j1', 'tau2j1', 'tau3j1', 'pxj2', 'pyj2', 'pzj2', 'mj2', 'tau1j2', 'tau2j2', 'tau3j2' They were used in CATHODE for training the idealized anomaly detector and supervised classifier, as well as for final evaluation of all the anomaly detection methods.