cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/lr02yc
title: Energy Projections for IEA Countries. Energy balances, 1960-2030
title: Projections: Energy Policies of IEA Countries. Energy balances, 1960-2030

description: This table includes statistical projections on the energy balance for IEA countries by analyzing their respective products (coal, oil, nuclear, hydro, biofuels and more) in terms of flow. Data are expressed in thousand tonnes of oil equivalent(ktoe) and forecasts extend to 2030. [Data editions 2015-2023]
description: Energy Projections for IEA Countries
description: 2015-2023 editions of the data. Mexico data is included in the 2019-2022 editions. Lithuania data is included in the 2020-2022 editions.

The 2023 edition of the data contains less countries than in any other version; countries included are Australia, Austria, Belgium, Canada, Colombia, Czechia, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy.
DOI: 10.5683/sp3/2lxg4d
title: Phylogenomics of coral-infecting corallicolids reveal multiple independent losses of chlorophyll biosynthesis in apicomplexan parasites

description: The transition from free-living to parasitic lifestyles induces major shifts in evolution, and nowhere is this more acute than in apicomplexans; obligate intracellular parasites of animals that evolved from photosynthetic algae. In other cases where photosynthesis has been lost, including most apicomplexans, chlorophyll is also absent, but in coral-infecting apicomplexans (corallicolids), chlorophyll biosynthesis genes are retained in the plastid genome despite their lack of photosystems. This suggests that the loss of photosynthesis and chlorophyll were decoupled in this lineage, but because these observations are only based on plastid genomes, two fundamental questions remain unclear. First, how this impacted apicomplexan evolution as a whole is unclear because there are conflicting phylogenetic positions for corallicolids: plastid gene phylogenies place them at the base of the apicomplexans whereas nuclear rRNA places them with late-branching coccidians. Second, it is unclear if chlorophyll or a metabolic intermediate is synthesized, as most chlorophyll biosynthesis enzymes are encoded in the nucleus. To address these questions we have sequenced transcriptomes from two corallicolids, infecting Parazoanthus swiftii and Madracis mirabilis. Phylogenomic data strongly support a late-branching relationship with coccidians, perhaps specifically to the protococcidians. We also find evidence for the expression of nucleus-encoded enzymes involved in chlorophyll biosynthesis in corallicolids and protococcidians. Overall, we conclude that photosynthesis was lost at the origin of apicomplexans, but chlorophyll synthesis was nonetheless retained through most of the early evolution of the group, and then lost approximately nine times independently, emphasizing the impact of parallel evolutionary changes in parasitic transitions.
DOI: 10.5683/sp3/w544po
title: Replication data for: Final report for Neudorff crabgrass trial – Project # G21-05

description: This project compared liquid, soluble granule and granular formulations of Fiesta at varying rates on pre-emergent and post-emergent control of crabgrass and other weeds in a cultivated area of soil. Two industry standard treatments were also included. The study has provided information on product efficacy.
description: Lyons' Lab Research Reports
description: SAS, 9.4
DOI: 10.5683/sp3/renqvk
title: Replication Data for: A tale of two mechanisms: The p53 modulator COTI-2 is a Zn metallochaperone

description: This dataset includes all computational chemistry co-ordinate files referred to in the main text. It also includes raw experimental data for replication and open science purposes.
DOI: 10.15468/dl.eth32y
title: Occurrence Download

description: A dataset containing 31280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Flora von Deutschland (Phanerogamen)",
 "GadmGid is DEU.7.14_1"
 ]
}

 The dataset includes 31280 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046888-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/it6khn
title: Replication Data for: A high-throughput screening approach to discover potential colorectal cancer chemotherapeutics: Repurposing drugs to disrupt 14-3-3 protein-BAD interactions

description: Includes the docked structures, prepared proteins, key representatives of the MD clusters, and all other structures used for analysis (with the exception of the full MD trajectories) in the named article.
DOI: 10.5683/sp3/4zb7rh
title: Replication Data for: Nitrogen dynamics and yields of fresh bean and sweet corn with different cover crops and planting dates

description: The objective of this study was to determine the impact of cover crop species and planting date on (1) fresh bean and sweet corn yield and (2) N dynamics.
description: SAS, 9.4
DOI: 10.5683/sp3/mm21ux
title: Priority areas for research and potential protection of seabed sediment carbon on Canada's continental margin - outputs and associated R code.

description: This repository contains a shapefile (PA_Shapefile.zip) delineating possible priority areas for research and potential protection of seabed sediment carbon within marine protected and conserved areas (MCAs) on Canada's continental margin. Areas were identified by selecting seabed sediments of high carbon density that lie outside of current MCAs. All areas were then ranked upon: 1) mean carbon density (including estimated uncertainty), 2) total carbon stock (including estimated uncertainty), 3) estimated mean mud content, 4) distance to shore, and 5) the proportion of the area which lies within Ecologically and Biologically Significant Areas; with the sum of these 5 rankings taken as a general metric for potential overall priority. All the associated code used for data manipulations, and file construction are also published here. The code file also contains exploratory analyses on the coverage of seabed sediment carbon by designated and proposed MCAs in Canada. Please see the readme file and the associated published paper for further information.
DOI: 10.5683/sp3/znlvwc
title: Engineering resource information literacy instruction needs of undergraduate engineering students transitioning to practicing engineers

description: Data, survey questions and interview questions from a research project that looked at information literacy instruction needs for undergraduate engineering students that intend to pursue professional practice directly after graduation. This data was obtained through surveys, interviews and analysis of job ads, syllabi, journal articles and YouTube videos. Various groups were included in the different tools above including engineering librarians, practicing engineers, undergraduate engineering students who had completed a PEY (professional experience year) or co-op placement and instructors, faculty and Teaching Assistants involved in undergraduate engineering education instruction.
DOI: 10.5683/sp3/htbb0d
title: Canadian Health Survey on Seniors, 2019-2020
title: Enquête canadienne sur la santé des aînés, 2020
title: CHSS

description: &lt;p&gt;The Canadian Health Survey on Seniors (CHSS) is a cross-sectional survey that collected information related to health status, health care services, supports, as well as social and health determinants for the Canadian population aged 65 and over. The survey is a supplement to the Canadian Community Health Survey (CCHS). The CHSS includes 15 minutes of content asked at the end of the CCHS to respondents aged 65 and over. The surveys are designed to flow seamlessly from the CCHS into the CHSS.&lt;/p&gt;

The objectives of the Canadian Health Survey on Seniors are:
&lt;ol&gt;
&lt;li&gt;To better understand what contributes to healthy aging by collecting data on the health and well-being of seniors, including their use of health care services and supports, as well as social, demographic, geographic and economic determinants.&lt;/li&gt;
&lt;li&gt;To produce estimates on the health of seniors aged 65 and over at the provincial level, and for seniors aged 85 and over at the national level.&lt;/li&gt;
&lt;li&gt;To produce a cross-sectional dataset on the health of seniors that permits analysis on a range of research questions and surveillance activities.&lt;/li&gt;
&lt;li&gt;To evaluate changes on certain aspects of health from the CCHS - Healthy Aging (HA), 2008/2009.&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;Due to the COVID-19 pandemic, collection was paused from mid-March until September, 2020. When collection resumed in September, a new module was added to the CCHS with content related to the pandemic: changes in mental health, precautions taken to protect against COVID-19, experiences of symptoms, getting tested for COVID, and willingness to get a vaccine. Important note: the responses for the COV module for the collection periods of September to December have been included on the 2020 annual file but they are not included in the 2019/2020 data file.&lt;/p&gt;
description: Note on documentation and variables: <br>
Variables displayed in the Data Curation Tool reflect organization in the CHSS Data Dictionary. Specific question metadata is included, when applicable, from the Questionnaire. For relevant modules comprising the CHSS, please refer to Chapter 3. Survey Content, of the User Guide.
description: Canadian Health Survey on Seniors
DOI: 10.5683/sp3/kus7ob
title: Replication Data for: Integrating C-H Information to Improve Machine Learning Classification Models for Microplastic Identification from Raman Spectra

description: The development of uniform, consistent spectroscopic databases of Raman spectra is important for the community to maximize the value of emerging machine learning techniques. This dataset contains processed and augmented Raman spectra acquired on a variety of common plastics, with variations in manufacturer and properties such as plastic color. The Raman spectra span the frequency window from 300 to 3900 cm-1, were collected using variations in instrumentation settings, were interpolated to 1 cm-1 wavenumber spacing to ensure compatibility, and were augmented 5X by random scaling and artificial noise introduction. Three different versions of the data are provided, each enabling exploration of a different strategy for training machine learning classification models. This data was used to train microplastic classification models using K-nearest neighbor algorithm of the sklearn package in python, as published in the associated manuscript. Python pickle files are included in the dataset, which contain the optimized models and supporting information for the models. The data are being posted in support of this research.

The data was created by the authors.
DOI: 10.5683/sp3/8qdqms
title: Admixture with cultivated sunflower likely facilitated establishment and spread of wild sunflower (Helianthus annuus) in Argentina

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;A better understanding of the genetic and ecological factors underlying successful invasions is critical to mitigate the negative impacts of invasive species. Here, we study the invasion history of &lt;em&gt;Helianthus annuus &lt;/em&gt;populations from Argentina, with particular emphasis on the role of post-introduction admixture with cultivated sunflower (also &lt;em&gt;H. annuus&lt;/em&gt;) and climate adaptation driven by large haploblocks. We conducted genotyping-by-sequencing of samples of wild populations as well as Argentinian cultivars and compared them with wild (including related annual Helianthus species) and cultivated samples from the native range. We also characterized samples for 11 known haploblocks associated with environmental variation in native populations to test whether haploblocks contributed to invasion success. Population genomics analyses supported two independent geographic sources for Argentinian populations, the central United States and Texas, but no significant contribution of related annual Helianthus species. We found pervasive admixture with cultivated sunflower, likely as result of post-introduction hybridization. Genomic scans between invasive populations and their native sources identified multiple genomic regions of divergence, possibly indicative of selection, in the invaded range. These regions significantly overlapped between the two native-invasive comparisons and showed disproportionally high crop ancestry, suggesting that crop alleles contributed to invasion success. We did not find evidence of climate adaptation mediated by haploblocks, yet outliers of genome scans were enriched in haploblock regions and, for at least two haploblocks, the cultivar haplotype was favoured in Argentina. Our results show that admixture with cultivated sunflower played a major role in the establishment and spread of &lt;em&gt;H. annuus&lt;/em&gt; populations in Argentina.&lt;/p&gt;
description: <b>Dryad version number:</b> 2
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.v9s4mw75c
<b>Storage size:</b> 333862320
<b>Visibility:</b> public
DOI: 10.5683/sp3/i6wg3j
title: Data from: Does genome-wide variation and putatively adaptive variation identify the same set of distinct populations?

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Identifying which populations within species to prioritize for conservation is a major challenge: one question is whether to prioritize populations based on adaptive variation versus considering genome-wide genetic variation. Many authors have advocated focusing solely on adaptive variation due to its direct connection to selection, function, and adaptive capacity. However, there are many limitations in identifying and using adaptive genetic variation for conservation. Patterns of genome-wide genetic variation may be congruent with patterns of adaptive genetic variation, and genome-wide variation is much easier to measure. However, evidence for congruence is mixed. We gather genome-wide and putatively adaptive SNP data across 34 species of plants and animals from published outlier and association studies to test congruence. We ask whether putatively adaptive subsets of genome-wide SNPs identify the same distinctive populations (measured using the Shapley Value of distinctiveness) as genome-wide SNPs. We find that genome-wide and putatively adaptive SNPs generally but variably agree on population prioritizations. As expected, the level of agreement is predicted by the proportion of putatively adaptive SNPs, and the agreement is lower when there is more overall population genetic structure. Interestingly, across our datasets, putatively adaptive SNPs do as well or better at predicting genome-wide population prioritization than sized-matched random subsets of SNPs. Taken together, using genome-wide genetic variation for population prioritization may be a generally sound and cost-effective strategy for prioritizing populations in order to safeguard species-level genetic variation.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;We collated genome-wide and putatively adaptive SNPs data from already published studies. We found outlier and/ore association type studies from three meta-analysis (Ahrens et al., 2018; Lind et al., 2018; Exposito-Alonso et al., 2022) and recommendations from colleagues and evaluated those studies based on a set criteria and thresholds. Data was obtained from public data repository or requested via email from the authors of studies. If data was emailed, permission was granted by the original study authors (via email communication) to provide the 012NA converted version of their datasets. &lt;/p&gt;
description: <b>Dryad version number:</b> 4
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.nvx0k6f1j
<b>Storage size:</b> 271770344
<b>Visibility:</b> public
DOI: 10.5683/sp3/jzw3h2
title: Replication Data for: Satellite observations reveal stable forest limits and widespread shrub expansion across the Canadian forest-tundra ecotone

description: Sample datasets and R code supporting research titled "Satellite observations reveal stable forest limits and widespread shrub expansion across the Canadian forest-tundra ecotone"
description: R, 4.4.1
DOI: 10.5683/sp3/shknug
title: Navigating Gender-based Inequity: The Role of Supervisory Support in Career Satisfaction Among South Asian Immigrants in Canada

description: This study aims to examine the role of gender-based inequity on the workplace experiences of South Asian immigrants in Canada. Specifically, it investigates the differences in gender-based inequity at work experienced by South Asian immigrant women and men, the level of supervisory support they receive, and the impact of these factors on their career satisfaction.
description: SPSS
DOI: 10.5683/sp3/silscj
title: Smart Triage: Clinical Data - PRST

description: This data is the Saving young lives: Triage and treatment using the pediatric rapid sepsis trigger (PRST) tool study. Data collected for this study occurred from April 2020 to April 2022. &lt;br&gt;

&lt;br/&gt;&lt;strong&gt;Objective(s):&lt;/strong&gt; This is a pre-post intervention study involving pediatric patients presenting to the study hospitals in seek of medical care for an acute illness. The purpose of this study was to develop a prediction model and to perform clinical validation of a digital triage tool to guide triage and treatment of children at health facilities in LMICs with severe infections/suspected sepsis. The study involved three phases: (I) Baseline Period, (II) Interphase Period, (III) Intervention Period. The study hospitals include 2 sites in Kenya (1 control site, 1 experimental site) and 2 in Uganda (1 control site, 1 experimental site). &lt;br&gt;

&lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; Predictor variables were collected at the time of triage by trained study nurses using a custom-built mobile application. All data entered into the mobile application was stored an encrypted database. Data was uploaded directly from the mobile device to a Research Electronic Data Capture (REDCap) database hosted at the BC Children’s Hospital Research Institute (Vancouver, Canada). Outcomes were obtained from facility records or telephone follow-up at 7-10 days and the data was collected electronically. Time-specific outcomes were tracked using an RFID tagging system with study personnel as backup. &lt;br&gt;

&lt;br /&gt;&lt;strong&gt;Limitations:&lt;/strong&gt; There is missing data and some variables were not collected at all sites. &lt;br&gt;

&lt;br /&gt;&lt;strong&gt;Ethics Declaration:&lt;/strong&gt; This study was approved by the Makerere University Higher Degrees research and Ethics Committee (No. 743), the Uganda National Institute of Science and Technology (HS 528ES), and the University of British Columbia / Children & Women’s Health Centre of British Columbia Research Ethics Board (H19-02398 & H20-00484).&lt;br/&gt;

&lt;br /&gt;&lt;strong&gt;Associated datasets:&lt;/strong&gt; &lt;br /&gt;
&lt;a href = "https://borealisdata.ca/dataset.xhtml?persistentId=doi:10.5683/SP3/IZT4UR"&gt;Saving young lives: Triage and management of sepsis in children using the point-of care Paediatric Rapid Sepsis Trigger (PRST) tool &lt;/a&gt;&lt;br /&gt;
description: &lt;br /&gt;&lt;strong&gt;NOTE for restricted files:&lt;/strong&gt; If you are not yet a CoLab member, please complete our &lt;a href = "https://rc.bcchr.ca/redcap/surveys/?s=EDCYL7AC79"&gt;membership application survey&lt;/a&gt; to gain access to restricted files within 2 business days.
&lt;br /&gt;Some files may remain restricted to CoLab members. These files are deemed more sensitive by the file owner and are meant to be shared on a case-by-case basis. Please contact the CoLab coordinator at &lt;a href = mailto:sepsiscolab@bccchr.ca&gt;sepsiscolab@bcchr.ca&lt;/a&gt; or visit our &lt;a href = "https://wfpiccs.org/pediatric-sepsis-colab/"&gt;website&lt;/a&gt;.
DOI: 10.5683/sp3/2cwxy6
title: A theoretical study on the detection of dynamic gene regulation in bulk tissue transcriptomes

description: Thousands of studies have used co-expression analysis of bulk tissue samples to probe gene regulation. However, the extent that intracellular regulatory signals are present in these data is unclear. Specifically, we lack clarity of the factors that promote or impede the propagation of regulatory signals from the single cell level to the bulk tissue level. To bring these issues into focus, we developed a novel computational simulator, grounded in real data, to explore the theoretical relationship between events in single cells and bulk tissue expression profiles, and clarify the conditions required for the propagation of intracellular regulatory signals in complex tissues such as the brain. Our simulator first generates single cell expression profiles and subsequently samples and aggregates these single cells to produce bulk tissue expression profiles. Using this framework, we found that there are very specific and unlikely conditions under which intracellular dynamic regulatory signals can be propagated to the bulk tissue level. For the most part, such regulatory relationships, however strong at the single cell level, are unlikely to be detectable. Our results provide a quantitative explanation for why regulatory network inference from co-expression has proved challenging - even with the assistance of other data modalities - and gives the scientific community a set of tools to further explore these issues in both single-cell and bulk tissue data.

List of Tables in TSV format:

&lt;ul&gt;
 &lt;li&gt;Supplementary Table S1. Cell type profiles&lt;/li&gt;
 &lt;li&gt;Supplementary Table S2. Gamma model parameters&lt;/li&gt;
 &lt;li&gt;Supplementary Table S3. Mean-variance trends&lt;/li&gt;
 &lt;li&gt;Supplementary Table S4. Explanatory power of CSIV versus ISV&lt;/li&gt;
 &lt;li&gt;Supplementary Table S5. Effects of dilution&lt;/li&gt;
 &lt;li&gt;Supplementary Table S6. Cell type proportions&lt;/li&gt;
 &lt;li&gt;Supplementary Table S7. Effects of cellular composition variability&lt;/li&gt;
 &lt;li&gt;Supplementary Table S8. Genes modeled in CCV experiments&lt;/li&gt;
 &lt;li&gt;Supplementary Table S9. Co-expression values in CCV experiments&lt;/li&gt;
 &lt;li&gt;Supplementary Table S10. Co-expression values of different scenarios&lt;/li&gt;
&lt;/ul&gt;
DOI: 10.5683/sp3/qmiars
title: CR4Interact: Citizen Readers for Character Interactions Dataset

description: This data is drawn from the "Social Lives of Literary Characters Project" as part of the Citizen Readers for Citizen Science Initiative. Please cite: Andrew Piper, Michael Xu, Derek Ruths, "The Social Lives of Literary Characters: Combining citizen science and language models to understand narrative social networks" NLP4DH (2024).