cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh514680.07fu
title: SH514680.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh514681.07fu
title: SH514681.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2782345.08fu
title: SH2782345.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2782346.08fu
title: SH2782346.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.dbppeh
title: Occurrence Download

description: A dataset containing 550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argynnis sagana Doubleday",
 "HasCoordinate is true"
 ]
}

 The dataset includes 550 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065497-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2ykfj
title: Occurrence Download

description: A dataset containing 5019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Steinchisma Raf."
 ]
}

 The dataset includes 5019 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252594-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkjizt
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis cretica L."
 ]
}

 The dataset includes 238 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012058-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gafm5
title: Occurrence Download

description: A dataset containing 1241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.62923 40.45476,-2.59497 40.45476,-2.59497 43.26726,-9.62923 43.26726,-9.62923 40.45476))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinolophus ferrumequinum (Schreber, 1774)",
 "Year 2014-2024"
 ]
}

 The dataset includes 1241 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065525-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z876tu
title: Occurrence Download

description: A dataset containing 2770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaena mysticetus Linnaeus, 1758"
 ]
}

 The dataset includes 2770 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252591-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q067gi
title: Occurrence Download

description: A dataset containing 1798 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus serrifer Cope, 1866"
 ]
}

 The dataset includes 1798 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010137-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phfjbe
title: Occurrence Download

description: A dataset containing 1004 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleusine coracana subsp. africana (Kenn.-O'Byrne) Hilu & de Wet"
 ]
}

 The dataset includes 1004 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252574-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4saf4
title: Occurrence Download

description: A dataset containing 93383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alces alces (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 93383 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065493-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da79m8
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Abundance of non-diatom phytoplankton measured on water bottle samples at station PS58/107-5"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010138-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psvciq
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dimocarpus longan Lour.",
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 61 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010138-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.petm2j
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sibthorpia peregrina L.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 119 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006566-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtfoxa
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elysia diomedea (Bergh, 1894)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 205 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010138-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcr37b
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boloria angarensis (Erschoff, 1870)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 110 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065508-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyyyu5
title: Occurrence Download

description: A dataset containing 9439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "TaxonKey is Abies pinsapo Boiss.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9439 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012047-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.15064003
title: Additional file 6 of Dynamic changes of miRNAs in skeletal muscle development at New Zealand rabbits

description: Additional file 6: Table S2.All identified miRNAs and their expression levels.
DOI: 10.6084/m9.figshare.21351313
title: Additional file 2 of Local CpG density affects the trajectory and variance of age-associated DNA methylation changes

description: Additional file 2: Supplementary tables Table S1-7.
DOI: 10.6084/m9.figshare.13491222.v1
title: Antarctic-wide annual ice flow maps from Landsat 8 imagery between 2013 and 2019

description: Ice velocity constitutes a key parameter for quantifying ice-sheet discharge rates and is thus crucial for improving the coupled models of the Antarctic ice sheet towards accurately predict its contribution to future global sea-level rise. However, in Antarctica, high-resolution and continuous ice velocity estimates remain elusive, which is key to unravel Antarctica’s present-day ice mass balance processes. Here, we present a suite of newly estimated Antarctic-wide, annually-sampled ice velocity products at 105-m grid-spacing observed by Landsat 8 optical images data. We first describe a procedure that can automatically calibrate and integrate ice displacement maps to generate Antarctic-wide seamless ice velocity products. The annual ice velocity mosaics are assembled using a total of 250,000 displacement maps inferred from more than 80,000 Landsat 8 images acquired between December 2013 and April 2019. The new annual Antarctic ice velocity data product exhibits an improved quantification of near-decadal Antarctic-wide ice flow, and an opportunity to investigate ice dynamics at a higher spatial resolution and annual sampling, as compared to existing data products. Validation studies confirmed improved accuracy and consistency of this new data product, when compared with independently estimated optical and radar ice velocity data products, as well as <i>in situ</i> data.
DOI: 10.6084/m9.figshare.15064003.v1
title: Additional file 6 of Dynamic changes of miRNAs in skeletal muscle development at New Zealand rabbits

description: Additional file 6: Table S2.All identified miRNAs and their expression levels.
DOI: 10.6084/m9.figshare.17161594.v1
title: Additional file 9 of Multi-omics analysis of an immune-based prognostic predictor in non-small cell lung cancer

description: Additional file 9.
DOI: 10.6084/m9.figshare.7724228
title: Additional file 2: of Helicobacter pylori infection as a risk factor for serum bilirubin change and less favourable lipid profiles: a hospital-based health examination survey

description: Database. Primary database of this study. (SAV 181 kb)
DOI: 10.6084/m9.figshare.21351313.v1
title: Additional file 2 of Local CpG density affects the trajectory and variance of age-associated DNA methylation changes

description: Additional file 2: Supplementary tables Table S1-7.
DOI: 10.6084/m9.figshare.6681662
title: Early butyrate induced acetylation of histone H4 is proteoform specific and linked to methylation state

description: Histone posttranslational modifications (PTMs) help regulate DNA templated processes; however, relatively little work has unbiasedly explored the single-molecule combinations of histone PTMs, their dynamics on short timescales, or how these preexisting histone PTMs modulate further histone modifying enzyme activity. We use quantitative top down proteomics to unbiasedly measure histone H4 proteoforms (single-molecule combinations of PTMs) upon butyrate treatment. Our results show that histone proteoforms change in cells within 10 minutes of application of sodium butyrate. Cells recover from treatment within 30 minutes after removal of butyrate. Surprisingly, K20me2 containing proteoforms are the near-exclusive substrate of histone acetyltransferases upon butyrate treatment. Single-molecule hierarchies of progressive PTMs mostly dictate the addition and removal of histone PTMs (K16ac &gt; K12ac ≥ K8ac &gt; K5ac, and the reverse on recovery). This reveals the underlying single-molecule mechanism that explains the previously reported but indistinct and unexplained patterns of H4 acetylation. Thus, preexisting histone PTMs strongly modulate histone modifying enzyme activity and this suggests that proteoform constrained reaction pathways are crucial mechanisms that enable the long-term stability of the cellular epigenetic state.
DOI: 10.6084/m9.figshare.7724423
title: Additional file 2: of Risk and consequences of chemotherapy-induced thrombocytopenia in US clinical practice

description: Risk and Consequences of CIT v2.1, Supplemental Findings, description of results from analyses within subgroups defined on cancer type and chemotherapy agent. (XLSX 327 kb)
DOI: 10.6084/m9.figshare.6681662.v2
title: Early butyrate induced acetylation of histone H4 is proteoform specific and linked to methylation state

description: Histone posttranslational modifications (PTMs) help regulate DNA templated processes; however, relatively little work has unbiasedly explored the single-molecule combinations of histone PTMs, their dynamics on short timescales, or how these preexisting histone PTMs modulate further histone modifying enzyme activity. We use quantitative top down proteomics to unbiasedly measure histone H4 proteoforms (single-molecule combinations of PTMs) upon butyrate treatment. Our results show that histone proteoforms change in cells within 10 minutes of application of sodium butyrate. Cells recover from treatment within 30 minutes after removal of butyrate. Surprisingly, K20me2 containing proteoforms are the near-exclusive substrate of histone acetyltransferases upon butyrate treatment. Single-molecule hierarchies of progressive PTMs mostly dictate the addition and removal of histone PTMs (K16ac &gt; K12ac ≥ K8ac &gt; K5ac, and the reverse on recovery). This reveals the underlying single-molecule mechanism that explains the previously reported but indistinct and unexplained patterns of H4 acetylation. Thus, preexisting histone PTMs strongly modulate histone modifying enzyme activity and this suggests that proteoform constrained reaction pathways are crucial mechanisms that enable the long-term stability of the cellular epigenetic state.
DOI: 10.6084/m9.figshare.7724156
title: Additional file 3: of Taxonomy, virulence genes and antimicrobial resistance of Aeromonas isolated from extra-intestinal and intestinal infections

description: Clinical data, genes of toxins and drug resistant patterns for 95 diarrhea patients related to Aeromonas spp. (XLS 578 kb)
DOI: 10.7266/n7-pf81-3y46
title: Expendable bathythermograph (XBT) profiles collected aboard R/V Acadiana in the northern Gulf of Mexico from 2017-10-12 to 2017-10-14
DOI: 10.6084/m9.figshare.20307212
title: Research on Molecular Mechanism of Fructus Ligustri Lucidi against Osteoporosis based on Network Pharmacology

description: Abstract TCMSP platform of systematic pharmacology of traditional Chinese medicine This study aimed to investigate the molecular mechanism of Fructus Ligustri Lucidi (NZZ, Chinese abbreviation) against osteoporosis (OP) by means of network pharmacology.ChemDraw Professional 15.1 software and Molinspiration Smiles database were used to draw the chemical formulas of the components. The active ingredients and related target proteins of NZZ were searched in platform of systematic pharmacology of traditional Chinese medicine database, Drugbank, Therapeutic Target Database, SymMap and other databases. Gene Ontology(GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were carried out on the selected target through Enrichr and KEGG Automatic Annotation databases, and their mechanism was studied. A total of 29 compounds and 140 corresponding targets, including 14 key targets and 14 protein factors in protein-protein interaction core network were obtained. The key targets were tumor necrosis factor(TNF), interleukin(IL)-6R and sestrogen receptor alpha. The number of GO items was 466 (P&lt;0.05), including 399 items of biological process (BP), 54 items of cell composition (MF) and 13 items of molecular function (CC). KEGG pathway enrichment screened 85 signaling pathways (P&lt;0.05), including the IL-17 signaling pathway, TNF signaling pathway, advanced glycation end products and their receptors signaling pathway and cAMP signaling pathway. The active ingredients of NZZ. exert their anti-OP effects through multi-components, multi-targets and multi-pathways, which can provide new evidence for further study of their anti-OP mechanism.
DOI: 10.6084/m9.figshare.20307212.v1
title: Research on Molecular Mechanism of Fructus Ligustri Lucidi against Osteoporosis based on Network Pharmacology

description: Abstract TCMSP platform of systematic pharmacology of traditional Chinese medicine This study aimed to investigate the molecular mechanism of Fructus Ligustri Lucidi (NZZ, Chinese abbreviation) against osteoporosis (OP) by means of network pharmacology.ChemDraw Professional 15.1 software and Molinspiration Smiles database were used to draw the chemical formulas of the components. The active ingredients and related target proteins of NZZ were searched in platform of systematic pharmacology of traditional Chinese medicine database, Drugbank, Therapeutic Target Database, SymMap and other databases. Gene Ontology(GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were carried out on the selected target through Enrichr and KEGG Automatic Annotation databases, and their mechanism was studied. A total of 29 compounds and 140 corresponding targets, including 14 key targets and 14 protein factors in protein-protein interaction core network were obtained. The key targets were tumor necrosis factor(TNF), interleukin(IL)-6R and sestrogen receptor alpha. The number of GO items was 466 (P&lt;0.05), including 399 items of biological process (BP), 54 items of cell composition (MF) and 13 items of molecular function (CC). KEGG pathway enrichment screened 85 signaling pathways (P&lt;0.05), including the IL-17 signaling pathway, TNF signaling pathway, advanced glycation end products and their receptors signaling pathway and cAMP signaling pathway. The active ingredients of NZZ. exert their anti-OP effects through multi-components, multi-targets and multi-pathways, which can provide new evidence for further study of their anti-OP mechanism.
DOI: 10.6084/m9.figshare.20307329
title: Differential Regulation of Integrin α5 and β4 in Normal and Psoriatic Epidermal Keratinocytes

description: Abstract Psoriasis is a chronic skin inflammation, characterized by impaired differentiation, hyperproliferation of keratinocytes involving pro-inflammatory factors interleukin (IL)-13/17A, tumor necrosis factor (TNF)-α, interferon (IFN)-γ. Among the integrin family, α5 is important for blood vessel formation, and β4 for proliferation, differentiation of keratinocytes. To investigate the expression and regulation of integrin α5 and β4 in psoriatic keratinocytes. Skin biopsies were obtained from 14 psoriatic patients and 12 normal volunteers. We compared the immunolocalization and regulation of α5 and β4 between the psoriatic and normal ones, before and after incubation with MEK/ERK pathway inhibitor U0126 by immunohistochemistry and western blot separately. Immunohistochemistry showed psoriatic keratinocytes had higher α5 than normal ones. According to western blot, IL-17A and IL-13 increased normal keratinocytes’ α5 and β4 respectively, but psoriatic keratinocytes were the exact opposite. Incubated with U0126, normal keratinocytes’ α5 was enhanced by the 5 cytokines ; while IL-13/17A, IFN-γ suppressed β4. Psoriatic keratinocytes’ α5 was increased by IL-13/17A, decreased by IFN-γ; but β4 increased by IL-17A, IFN-γ. IL-13/17A, TNF-α, IFN-γ regulate α5 and β4 through ERK pathway whether normal or psoriasis. The normal and psoriatic keratinocytes respond to the same cytokines differently.