cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14880312
title: Integrative phenomics, metabolomics and genomics analysis provides new insights for deciphering the genetic basis of metabolism in polished rice

description: Background: Metabolomics is one of the most widely used omics tools for deciphering the functional networks of the metabolites for crop improvement. However, it is technically demanding and costly.Results: We propose a relatively inexpensive approach for metabolomics analysis in which metabolomics is combined with hyperspectral imaging via machine learning. This approach can be used to target important steps in flavonoid and lipid biosynthesis in rice. We extract 1848 hyperspectral indices and 887 metabolites from polished grains of 533 Oryza sativa accessions. Hyperspectral indices are then linked to metabolites through correlation analysis and modelling. Based on this, a total of 554 metabolites and 1313 hyperspectral indices are identified for further genome-wide association study (GWAS). By GWAS, we detect 17,509 significant locus-trait associations with 2882 single nucleotide polymorphism (SNPs). Colocalization analysis links these SNPs to the corresponding metabolites and hyperspectral indices. We detect 6415 pairs of metabolites and hyperspectral indices within a linkage disequilibrium of 300 kb in the Oryza sativa genome. We then characterize 1761 candidate genes colocalized to these loci by transcriptomic analysis. We further verify novel candidate genes encoding a novel flavonoid (LOC_Os09g18450) and a flavonoid/lipid (LOC_Os07g11020) respectively by gene editing and overexpression in rice.Conclusion: Our findings indicate that hyperspectral imaging combined with machine learning methods could serve as a powerful tool for quickly and inexpensively assessing crop metabolites.
DOI: 10.5281/zenodo.14880313
title: Integrative phenomics, metabolomics and genomics analysis provides new insights for deciphering the genetic basis of metabolism in polished rice

description: Background: Metabolomics is one of the most widely used omics tools for deciphering the functional networks of the metabolites for crop improvement. However, it is technically demanding and costly.Results: We propose a relatively inexpensive approach for metabolomics analysis in which metabolomics is combined with hyperspectral imaging via machine learning. This approach can be used to target important steps in flavonoid and lipid biosynthesis in rice. We extract 1848 hyperspectral indices and 887 metabolites from polished grains of 533 Oryza sativa accessions. Hyperspectral indices are then linked to metabolites through correlation analysis and modelling. Based on this, a total of 554 metabolites and 1313 hyperspectral indices are identified for further genome-wide association study (GWAS). By GWAS, we detect 17,509 significant locus-trait associations with 2882 single nucleotide polymorphism (SNPs). Colocalization analysis links these SNPs to the corresponding metabolites and hyperspectral indices. We detect 6415 pairs of metabolites and hyperspectral indices within a linkage disequilibrium of 300 kb in the Oryza sativa genome. We then characterize 1761 candidate genes colocalized to these loci by transcriptomic analysis. We further verify novel candidate genes encoding a novel flavonoid (LOC_Os09g18450) and a flavonoid/lipid (LOC_Os07g11020) respectively by gene editing and overexpression in rice.Conclusion: Our findings indicate that hyperspectral imaging combined with machine learning methods could serve as a powerful tool for quickly and inexpensively assessing crop metabolites.
DOI: 10.6084/m9.figshare.25669998
title: <b>Genomes of two </b><b>indigenous clams </b><b><i>Anomalocardia flexuosa</i></b><b> (Linnaeus, 1767) and </b><b><i>Meretrix petechialis </i></b><b>(Lamarck, 1818)</b>

description: Clam digging has a long history in Hong Kong, but unregulated clam digging activities depletes clam populations and threatens the ecosystem. Population genomics is useful to unravel the connectivity of clams at different geographical locations and to provide necessary conservation measures; and yet, only limited number of clams in Hong Kong have genomic resources. Here, we present chromosomal-level genome assemblies for two clams commonly found in Hong Kong, <i>Anomalocardia flexuosa</i> and <i>Meretrix petechialis</i>, using a combination of PacBio HiFi and Omni-C reads. For <i>A. flexuosa</i>, we assembled the genome into 19 pseudochromosomes with a genome size of 1.09 Gb (scaffold N50 = 58.5 Mb), and BUSCO scores of 94.4%. A total of 20,881 gene models were also predicted using the transcriptomes generated in this study. For <i>M. petechialis</i>, the genome was mainly assembled into 19 pseudochromosomes with a genome size of 1.04 Gb (scaffold N50 = 53.5 Mb), and BUSCO scores of 95.7%. A total of 20,084 gene models were also predicted using the transcriptomes generated in this study. The two new genomic resources established in this study will be useful for further study of biology, ecology, and evolution of clams, as well as setting up a foundation for evidence-informed decision making in conservation measures and implementation.
DOI: 10.15468/dl.txmd3d
title: Occurrence Download

description: A dataset containing 146729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lycium ferocissimum Miers"
 ]
}

 The dataset includes 146729 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002334-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqenym
title: Occurrence Download

description: A dataset listing the 948 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Estudio florístico de la Sierra de Pachuca, Hidalgo, México"
 ]
}

 The dataset's 948 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002350-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajj9uj
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphiuma Garden, 1821"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002352-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dsy9f
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Inimicus japonicus (Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 149 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002353-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keeeb6
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hohenbergia andina Betancur"
 ]
}

 The dataset includes 21 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002354-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ycvf9
title: Occurrence Download

description: A dataset containing 837 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum squarrosum Stephan ex Willd."
 ]
}

 The dataset includes 837 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002355-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbufuf
title: Occurrence Download

description: A dataset containing 9143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus citrinus (Smith, 1854)"
 ]
}

 The dataset includes 9143 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002356-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8xnbt
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Serratula coronata subsp. insularis (Iljin) Kitam.",
 "Year is greater than or equal to 1962"
 ]
}

 The dataset includes 494 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002357-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11922679
title: Bucuresti Filaret Observatory Actinometer Data (1892-1903)

description: Description:

Data from the Filaret Observatory's Arago-Davy actinometer observations are accessible in printed form through the monthly bulletins published by the Romanian Meteorological Institute (1894-1908). These observations were conducted daily, at one-hour intervals throughout daylight hours. The data covers the period from January 1892 to December 1903.

The file Bucuresti_Filaret_actinometric-degrees-original_1892_1903.dat contains the original hourly data, and the Bucuresti_Filaret_actinometric-degrees-calibrated_1892_1903.dat file includes the data calibrated using the methodology proposed in Badescu et al. (2024): SOLAR GLOBAL IRRADIANCE FROM ACTINOMETRIC DEGREE DATA FOR FILARET OBSERVATORY (BUCHAREST), 1892-1903 (published).

The structure of the files is as follows:

Column 1 = recording numberColumn 2 = yearColumn 3 = monthColumn 4 = dayColumn 5 = hourColumn 6 = actinometric degree (%)
DOI: 10.5281/zenodo.11922681
title: Bucuresti Filaret Observatory Actinometer Data (1892-1903)

description: Description:

Data from the Filaret Observatory's Arago-Davy actinometer observations are accessible in printed form through the monthly bulletins published by the Romanian Meteorological Institute (1894-1908). These observations were conducted daily, at one-hour intervals throughout daylight hours. The data covers the period from January 1892 to December 1903.

The file Bucuresti_Filaret_actinometric-degrees-original_1892_1903.dat contains the original hourly data, and the Bucuresti_Filaret_actinometric-degrees-calibrated_1892_1903.dat file includes the data calibrated using the methodology proposed in Badescu et al. (2024): SOLAR GLOBAL IRRADIANCE FROM ACTINOMETRIC DEGREE DATA FOR FILARET OBSERVATORY (BUCHAREST), 1892-1903 (published).

The structure of the files is as follows:

Column 1 = recording numberColumn 2 = yearColumn 3 = monthColumn 4 = dayColumn 5 = hourColumn 6 = actinometric degree (%)
DOI: 10.15468/dl.thh9ss
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Membracis foliatafasciata (De Geer, 1773)"
 ]
}

 The dataset includes 484 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002358-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14880343
title: The genome of Paracondylactis sinensis
DOI: 10.5281/zenodo.14880344
title: The genome of Paracondylactis sinensis
DOI: 10.15468/dl.4bmb43
title: Occurrence Download

description: A dataset containing 3823 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Estudio florístico de la Sierra de Pachuca, Hidalgo, México"
 ]
}

 The dataset includes 3823 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002359-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv53uw
title: Occurrence Download

description: A dataset containing 162472114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "OccurrenceStatus is Present",
 "Year 2016-2017"
 ]
}

 The dataset includes 162472114 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002351-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14776614
title: Chorus wave properties and electron density data for the study "Association of Relativistic Electron Microbursts Duration with Chorus Wave Properties"

description: The data are the properties of rising tone lower-band chorus elements observed over 8 years (2012–2019), including time duration (s), starting frequency (Hz), ending frequency (Hz), L-shell, MLAT, and MLT. To identify and characterize the chorus elements, we used burst-mode waveform data from the Electric and Magnetic Field Instrument Suite and Integrated Science (EMFISIS) instrument onboard the Van Allen Probe A. The electron density (cc) is derived from the upper hybrid resonance (UHR) frequency, as measured by the EMFISIS high-frequency receiver (HFR) in the frequency range of 10 to 500 kHz. These parameters are then used to calculate the duration of 1 MeV electron microbursts induced by the chorus elements.
DOI: 10.5281/zenodo.14776615
title: Chorus wave properties and electron density data for the study "Association of Relativistic Electron Microbursts Duration with Chorus Wave Properties"

description: The data are the properties of rising tone lower-band chorus elements observed over 8 years (2012–2019), including time duration (s), starting frequency (Hz), ending frequency (Hz), L-shell, MLAT, and MLT. To identify and characterize the chorus elements, we used burst-mode waveform data from the Electric and Magnetic Field Instrument Suite and Integrated Science (EMFISIS) instrument onboard the Van Allen Probe A. The electron density (cc) is derived from the upper hybrid resonance (UHR) frequency, as measured by the EMFISIS high-frequency receiver (HFR) in the frequency range of 10 to 500 kHz. These parameters are then used to calculate the duration of 1 MeV electron microbursts induced by the chorus elements.
DOI: 10.15468/dl.n78mvk
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corispermum stauntonii Moq."
 ]
}

 The dataset includes 241 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002360-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cqycf
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grubovia dasyphylla (Fisch. & C.A.Mey.) Freitag & G.Kadereit"
 ]
}

 The dataset includes 719 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002362-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4ef8c
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corispermum elongatum Bunge"
 ]
}

 The dataset includes 213 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002363-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ea8ptp/48hr91
title: Project Details.docx
DOI: 10.7910/dvn/ea8ptp/6xahop
title: total land area.xls
DOI: 10.7910/dvn/ea8ptp/ehl482
title: Landholdings.xls
DOI: 10.7910/dvn/ea8ptp/f2ghf9
title: Land use, livelihoods and rice variety diversityCM.doc
DOI: 10.7910/dvn/ea8ptp/ti0b7x
title: Source of seeds.xls
DOI: 10.7910/dvn/ea8ptp/y6f6pe
title: Questionnaire_Rice cultivar and yield losses from pests_Lolit Garcia.doc
DOI: 10.7910/dvn/ea8ptp/y8btjh
title: member's information.xls
DOI: 10.15468/dl.a652r3
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kochia sieversiana (Pall.) C.A.Mey."
 ]
}

 The dataset includes 180 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002364-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.576p5e
title: Occurrence Download

description: A dataset containing 1140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystilifera"
 ]
}

 The dataset includes 1140 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002365-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.isvxg7
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caracara cheriway cheriway"
 ]
}

 The dataset includes 96 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002991-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phregg
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bambusa hainanensis L.C.Chia & H.L.Fung"
 ]
}

 The dataset includes 8 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036588-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ooduoq
title: Occurrence Download

description: A dataset containing 1097 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 1097 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002992-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdazf3
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is 5fefe378-7106-49d3-9dd3-545cfdde6486"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005283-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.olgqae
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus strobus L.",
 "Country is Canada",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 201 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002992-150422101436696/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umnyy8
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Percnon guinotae Crosnier, 1965"
 ]
}

 The dataset includes 135 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054916-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-2412
title: SCLC v City of LA, 34. Petition for writ of mandate / prohibition, 1991-05-30

description: 34: Case no. Related case nos: B057636, B057609. Court of Appeal of California Second Appellate District, Division Two. Southern Christian Leadership Conference of Greater Los Angeles, et al., petitioners, v. Superior Court of the State of California for the County of Los Angeles, respondent. City of Los Angeles, City Council; Daryl Gates, Chief of Police; The City of Los Angeles; James K. Hahn, Los Angeles City Attorney; Board of Police Commissioners, City of Los Angeles, real parties in interest. California Superior Court case no. BS006789 and California Superior Court case no. BC025356, Honorable Ronald Sohigian, Judge. Petition for writ of mandate / prohibition, 1991 May 30. Includes Appendix A: Orcer, Court of Appeal, case no. B057636, filed 1991 April 16. Includes Appendix B: Order, Court of Appeal, case no. BS006789, filed 1991 April 16. Includes Proof of service, 1991 May 31.
DOI: 10.15468/dl.dcw2xq
title: Occurrence Download

description: A dataset containing 2632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dorymyrmex Mayr, 1866",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2632 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002992-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j997f3
title: Occurrence Download

description: A dataset containing 1203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material citation, Specimen, Occurrence evidence)",
 "Geometry POLYGON((-78.77838 -8.55242,-78.78658 -8.56312,-78.76124 -8.60836,-78.74504 -8.6202,-78.72463 -8.6202,-78.70492 -8.6021,-78.71407 -8.58122,-78.71854 -8.56008,-78.746 -8.54477,-78.77838 -8.55242))"
 ]
}

 The dataset includes 1203 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005285-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gm1rnz
title: Occurrence Download

description: A dataset containing 2202 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colubrina asiatica (L.) Brongn."
 ]
}

 The dataset includes 2202 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002992-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ud7hn
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Ixora auriculata Elmer"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002015-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.