cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21444753
title: Traits_Data

description: The dataset contains morphological and biochemical information of insects (adult <em>Amblystogenium pacificum</em>) collected from a sub-Antarctic island (Possession Island, Crozet archipelago). ‘Dark’ (D-morphotype, <em>i.e., </em>of black coloration) and ‘Light’ insects (L-morphotype, <em>i.e.</em> of brown coloration) were samples along an altitudinal gradient: 12 insects of the 'dark' morphotype and 11 insects of the 'light' morphotype were sampled at 0 m asl, 12 ‘dark’' and 12 'light' insects at both 130 m and 300 m, 26 'dark' and 20 'light' insects at 600 m, and finally 13 'dark' and 9 ‘light' insects at 900 m asl. All specimens collected were preserved in 70% ethanol at -25 °C until being processed. <br> Several morphological and physiological traits were measured for each collected individual. First, six size features were measured: interocular distance as a proxy of head size, length and width of the pronotum, length of the femur of the third left leg and length and width of the elytra. Each insect was then weighed (XP2U Mettler Toledo Balance, Columbus, OH, d = 0.1 μg), and its sex identified. Biochemical assays were performed to extract and quantify protein, sugar and lipid body contents. For all biochemical measurements, quantities were related to the dry body mass of each individual, and results are thus presented as Proteins/Mass, Sugars/Mass, Lipids/Mass.
DOI: 10.6084/m9.figshare.21444753.v1
title: Traits_Data

description: The dataset contains morphological and biochemical information of insects (adult <em>Amblystogenium pacificum</em>) collected from a sub-Antarctic island (Possession Island, Crozet archipelago). ‘Dark’ (D-morphotype, <em>i.e., </em>of black coloration) and ‘Light’ insects (L-morphotype, <em>i.e.</em> of brown coloration) were samples along an altitudinal gradient: 12 insects of the 'dark' morphotype and 11 insects of the 'light' morphotype were sampled at 0 m asl, 12 ‘dark’' and 12 'light' insects at both 130 m and 300 m, 26 'dark' and 20 'light' insects at 600 m, and finally 13 'dark' and 9 ‘light' insects at 900 m asl. All specimens collected were preserved in 70% ethanol at -25 °C until being processed. <br> Several morphological and physiological traits were measured for each collected individual. First, six size features were measured: interocular distance as a proxy of head size, length and width of the pronotum, length of the femur of the third left leg and length and width of the elytra. Each insect was then weighed (XP2U Mettler Toledo Balance, Columbus, OH, d = 0.1 μg), and its sex identified. Biochemical assays were performed to extract and quantify protein, sugar and lipid body contents. For all biochemical measurements, quantities were related to the dry body mass of each individual, and results are thus presented as Proteins/Mass, Sugars/Mass, Lipids/Mass.
DOI: 10.5281/zenodo.7271440
title: Morphological measurements of coccoliths from surface samples of South China Sea

description: The dataset compiles morphological measurements of coccoliths (<em>Gephyrocapsa</em> spp. and <em>Emiliania huxleyi</em>, &gt;2µm) from surface samples of the South China Sea retrieved at different depths of the basin during the R/V Sonne cruises (SO-95); and of Gephyrocapsa spp. from one sample from the Western Equatorial Pacific (ODP 807A, -2H-2W, 57-59 cm) used in a dissolution experiment. The columns include station names, Longitude, Latitude, Depth (m), how much Calgon was added into sediment suspension (in the dissolution experiment), number of coccoliths measured per sample, mean ks shape factor, thickness, length, volume, mass, and standard deviation of mean ks/mean ks.
description: Grants: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brazil (CAPES) - Finance Code 001; CAPES-PRINT – Programa Institucional de Internacionalização - Process: 88887.571907/2020-00; National Natural Science Foundation of China (grants 42188102 and 41930536 to C.L).
DOI: 10.6084/m9.figshare.21155419.v1
title: Dataset of freshwater macroinvertebrate occurrences from Cuba

description: Dataset of georeferenced occurrence records of freshwater flatworms (Platyhelminthes: Tricladida), insects (Ephemeroptera, Odonata, Hemiptera, Trichoptera, Coleoptera, Diptera), crabs and shrimps (Crustacea: Decapoda), and mollusks (Mollusca) of Cuba. The information was collated from scientific literature, unpublished field records, museum collections and online databases. The dataset is organized in 31 fields that contains information about the taxonomic classification of each recorded species; sex, and life stage of individuals; location, author and date of the record and a reference to the original data source.
DOI: 10.34740/kaggle/dsv/4432783
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.21444861.v1
title: split_00_small.npz

description: Random sample of water clusters up to 75 nodes for a total of 500k graphs.
DOI: 10.6084/m9.figshare.21444861
title: split_00_small.npz

description: Random sample of water clusters up to 75 nodes for a total of 500k graphs.
DOI: 10.6084/m9.figshare.21407418
title: Epigenome_Datasets

description: Holstein embryos were produced in vitro (IVP, n=4) or in vivo (by ovarian superstimulation followed by AI; MOET, n=4) and transferred to synchronized recipients. Pregnancies were monitored until delivery. Male calves were maintained in similar conditions during the postnatal period until euthanasia at around 100 days of age. The following datasets correspond to the epigenomic modifications in the hypothalamus, pituitary, testicles, adrenals, liver, and muscle from IVP and MOET calves. The WGBS clean reads were aligned to the bovine reference genome (bosTau 9) using the Bismark Bisulfite Read Marker (v 0.22.3). The percent of methylated cytosines was calculated as the number of methylated cytosines/total number of cytosines x 100. Cytosines were annotated with the nearest (no specific cut-off) transcription start site (TSS) and with gene structures (promoter, exon, intron, CpG islands or shores) through Genomation (Bioconductor/R). Promoters and CpG shore were defined as ± 1000 bp and ± 2000 bp of the TSS and CpG islands, respectively. <br> The datasets are publicly made available for scientific / academic research purpose only and not for commercial use. Please cite our original papers as a reference if you download and use our datasets: Rabaglino MB, Bojsen-Møller Secher J, Sirard MA, Hyttel P, Kadarmideen HN. (2021). Epigenomic and transcriptomic analyses reveal early activation of the HPG axis in in vitro-produced male dairy calves<em>.</em> <em>FASEB Journal</em> 35(10):e21882. https://faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202101067R Rabaglino MB, Bojsen-Møller Secher J, Hyttel P, Kadarmideen HN., (2022). In vitro- and in vivo-produced male dairy calves show molecular differences in the hepatic and muscular energy regulation, <em>Biology of Reproduction</em>. 107 (4): 1113–1124, https://doi.org/10.1093/biolre/ioac131 If more information is needed, please contact the corresponding author hajak_at_dtu_dot_dk
DOI: 10.6084/m9.figshare.21407418.v3
title: Epigenome_Datasets

description: Holstein embryos were produced in vitro (IVP, n=4) or in vivo (by ovarian superstimulation followed by AI; MOET, n=4) and transferred to synchronized recipients. Pregnancies were monitored until delivery. Male calves were maintained in similar conditions during the postnatal period until euthanasia at around 100 days of age. The following datasets correspond to the epigenomic modifications in the hypothalamus, pituitary, testicles, adrenals, liver, and muscle from IVP and MOET calves. The WGBS clean reads were aligned to the bovine reference genome (bosTau 9) using the Bismark Bisulfite Read Marker (v 0.22.3). The percent of methylated cytosines was calculated as the number of methylated cytosines/total number of cytosines x 100. Cytosines were annotated with the nearest (no specific cut-off) transcription start site (TSS) and with gene structures (promoter, exon, intron, CpG islands or shores) through Genomation (Bioconductor/R). Promoters and CpG shore were defined as ± 1000 bp and ± 2000 bp of the TSS and CpG islands, respectively. <br> The datasets are publicly made available for scientific / academic research purpose only and not for commercial use. Please cite our original papers as a reference if you download and use our datasets: Rabaglino MB, Bojsen-Møller Secher J, Sirard MA, Hyttel P, Kadarmideen HN. (2021). Epigenomic and transcriptomic analyses reveal early activation of the HPG axis in in vitro-produced male dairy calves<em>.</em> <em>FASEB Journal</em> 35(10):e21882. https://faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202101067R Rabaglino MB, Bojsen-Møller Secher J, Hyttel P, Kadarmideen HN., (2022). In vitro- and in vivo-produced male dairy calves show molecular differences in the hepatic and muscular energy regulation, <em>Biology of Reproduction</em>. 107 (4): 1113–1124, https://doi.org/10.1093/biolre/ioac131 If more information is needed, please contact the corresponding author hajak_at_dtu_dot_dk
DOI: 10.6084/m9.figshare.21407418.v2
title: Epigenome_Datasets

description: Holstein embryos were produced in vitro (IVP, n=4) or in vivo (by ovarian superstimulation followed by AI; MOET, n=4) and transferred to synchronized recipients. Pregnancies were monitored until delivery. Male calves were maintained in similar conditions during the postnatal period until euthanasia at around 100 days of age. The following datasets correspond to the epigenomic modifications in the hypothalamus, pituitary, testicles, adrenals, liver, and muscle from IVP and MOET calves. The WGBS clean reads were aligned to the bovine reference genome (bosTau 9) using the Bismark Bisulfite Read Marker (v 0.22.3). The percent of methylated cytosines was calculated as the number of methylated cytosines/total number of cytosines x 100. Cytosines were annotated with the nearest (no specific cut-off) transcription start site (TSS) and with gene structures (promoter, exon, intron, CpG islands or shores) through Genomation (Bioconductor/R). Promoters and CpG shore were defined as ± 1000 bp and ± 2000 bp of the TSS and CpG islands, respectively. <br> The datasets are publicly made available for scientific / academic research purpose only and not for commercial use. Please cite our original papers as a reference if you download and use our datasets: Rabaglino MB, Bojsen-Møller Secher J, Sirard MA, Hyttel P, Kadarmideen HN. (2021). Epigenomic and transcriptomic analyses reveal early activation of the HPG axis in in vitro-produced male dairy calves<em>.</em> <em>FASEB Journal</em> 35(10):e21882. https://faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202101067R Rabaglino MB, Bojsen-Møller Secher J, Hyttel P, Kadarmideen HN., (2022). In vitro- and in vivo-produced male dairy calves show molecular differences in the hepatic and muscular energy regulation, <em>Biology of Reproduction</em>. 107 (4): 1113–1124, https://doi.org/10.1093/biolre/ioac131 If more information is needed, please contact the corresponding author hajak_at_dtu_dot_dk
DOI: 10.6084/m9.figshare.21443826.v4
title: SHIT

description: no description
DOI: 10.6084/m9.figshare.21443826.v3
title: ERROR

description: no description
DOI: 10.25592/uhhfdm.9833
title: Shedding light on dark figures: steps towards a methodology for estimating actual numbers of COVID-19 infections in Germany based on Google Trends

description: Data used for research project: Shedding light on dark figures: Steps towards a methodology for estimating actual numbers of COVID-19 infections in Germany based on Google Trends Data obtained from Google Trends (trends.google.de) and Robert Koch Institute (https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/nCoV.html).
DOI: 10.25592/uhhfdm.9831
title: Shedding light on dark figures: steps towards a methodology for estimating actual numbers of COVID-19 infections in Germany based on Google Trends

description: Data used for research project: Shedding light on dark figures: Steps towards a methodology for estimating actual numbers of COVID-19 infections in Germany based on Google Trends Data obtained from Google Trends (trends.google.de) and Robert Koch Institute (https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/nCoV.html).
DOI: 10.6084/m9.figshare.20553996
title: Foodborne outbreak limited dataset.xlsx

description: Enteric disease outbreak investigation
DOI: 10.6084/m9.figshare.20553996.v1
title: Foodborne outbreak limited dataset.xlsx

description: Enteric disease outbreak investigation
DOI: 10.25398/rd.northumbria.21393960
title: HePulse 885534J2

description: HePulse 885534J3 Dataset - Soft diamond-like carbon coatings with superior biocompatibility for medical applications: Biomedical applications of diamond-like carbon (DLC) coatings are continuously increasing in recent years. The biocompatibility of DLC coatings has been comprehensively investigated over numerous materials, substrate systems, and dopants but not as a function of DLC intrinsic properties. In this work, a series of DLC coatings are prepared as a function of bias voltage varying from 0 to -120 V, and characterised for their atomic structure, physical, and mechanical properties, and biocompatibility. The contact angle and surface roughness reduce while hardness increases from 7.8 to 20.3 GPa with increasing bias voltage from 0 to -120 V. A relatively soft DLC coating retains its biocompatibility, however, relatively hard DLC coatings present an approaching cytotoxic profiles following exposure of their leached extracts to L929 mouse fibroblast cells. This work will support the correct selection of DLC coatings with an appropriate balance of hardness and biocompatibility for specific biomedical applications.
DOI: 10.25398/rd.northumbria.21393960.v1
title: HePulse 885534J2

description: HePulse 885534J3 Dataset - Soft diamond-like carbon coatings with superior biocompatibility for medical applications: Biomedical applications of diamond-like carbon (DLC) coatings are continuously increasing in recent years. The biocompatibility of DLC coatings has been comprehensively investigated over numerous materials, substrate systems, and dopants but not as a function of DLC intrinsic properties. In this work, a series of DLC coatings are prepared as a function of bias voltage varying from 0 to -120 V, and characterised for their atomic structure, physical, and mechanical properties, and biocompatibility. The contact angle and surface roughness reduce while hardness increases from 7.8 to 20.3 GPa with increasing bias voltage from 0 to -120 V. A relatively soft DLC coating retains its biocompatibility, however, relatively hard DLC coatings present an approaching cytotoxic profiles following exposure of their leached extracts to L929 mouse fibroblast cells. This work will support the correct selection of DLC coatings with an appropriate balance of hardness and biocompatibility for specific biomedical applications.
DOI: 10.25398/rd.northumbria.21388734
title: HePulse 885534J3

description: HePulse 885534J3 Dataset - A New Design of Precision Silver Doped Diamond-Like Carbon Coating with Superior Bio-Mechanical Performance: Silver (Ag) doped diamond-like carbon (DLC) coatings are in high demand for biomedical applications. However, excess Ag doping in typical Ag/DLC coatings reduces mechanical performance and poses cytotoxicity to human cells. In this work a new Ag/DLC coating model is proposed with precise doping of Ag in a DLC matrix in the form of isolated nanoparticles embedded at controlled depths. The new version of Ag/DLC is designed to perform robust antimicrobial action in the early post-surgery stages, while a confined Ag amount maintains the excellent mechanical and biocompatibility performance of the underlying DLC coating when compared to typical Ag/DLC designs. Pure DLC without Ag, typically made Ag/DLC having 17 at. % Ag doped throughout the DLC matrix and new Ag/DLC coatings with 2 at. % precise Ag doping, are made with a modified magnetron sputtering system with control over the deposition process. The coatings are characterised for structural, mechanical, ion leaching, and cytotoxicity profiles against L929 fibroblast cells. The typical and new Ag/DLC coatings have similar ion release rates of ~ 0.6 ppm and the new design outperforms the typical Ag/DLC with 63% higher hardness, 100% higher Young’s modulus, and 21% higher biocompatibility. This enhanced biomechanical performance of the proposed new Ag/DLC design could have significant potential for coating of load-carrying medical devices.
DOI: 10.25398/rd.northumbria.21388734.v1
title: HePulse 885534J3

description: HePulse 885534J3 Dataset - A New Design of Precision Silver Doped Diamond-Like Carbon Coating with Superior Bio-Mechanical Performance: Silver (Ag) doped diamond-like carbon (DLC) coatings are in high demand for biomedical applications. However, excess Ag doping in typical Ag/DLC coatings reduces mechanical performance and poses cytotoxicity to human cells. In this work a new Ag/DLC coating model is proposed with precise doping of Ag in a DLC matrix in the form of isolated nanoparticles embedded at controlled depths. The new version of Ag/DLC is designed to perform robust antimicrobial action in the early post-surgery stages, while a confined Ag amount maintains the excellent mechanical and biocompatibility performance of the underlying DLC coating when compared to typical Ag/DLC designs. Pure DLC without Ag, typically made Ag/DLC having 17 at. % Ag doped throughout the DLC matrix and new Ag/DLC coatings with 2 at. % precise Ag doping, are made with a modified magnetron sputtering system with control over the deposition process. The coatings are characterised for structural, mechanical, ion leaching, and cytotoxicity profiles against L929 fibroblast cells. The typical and new Ag/DLC coatings have similar ion release rates of ~ 0.6 ppm and the new design outperforms the typical Ag/DLC with 63% higher hardness, 100% higher Young’s modulus, and 21% higher biocompatibility. This enhanced biomechanical performance of the proposed new Ag/DLC design could have significant potential for coating of load-carrying medical devices.
DOI: 10.6084/m9.figshare.6741431.v17
title: COCI CSV dataset of the provenance information of all the citation data

description: This dataset contains the provenance information (in CSV format) of all the citation data included in COCI, released on 31 August 2022. In particular, each line of the CSV file defines a citation, and includes the following information: <strong>[field "oci"]</strong> the Open Citation Identifier (OCI) for the citation; <strong>[field "agent"]</strong> the name of the agent that have created the citation data; <strong>[field "source"]</strong> the URL of the source dataset from where the citation data have been extracted; <strong>[field "datetime"]</strong> the creation time of the citation data. The size of the zipped archive is 19.71 GB, while the size of the unzipped CSV file is 308 GB.Additional information about COCI can be retrieved in the <sub>official webpage</sub>.
DOI: 10.48698/3z31-8924
title: An atlas of healthy and injured cell states and niches in the human kidney
DOI: 10.5281/zenodo.7104775
title: Online Supplemental Tables - An atlas of genome-wide gene expression and metabolite associations and possible mediation effects towards body mass index

description: Summary statistics of metabolite-gene expression associations and mediation analyses of effects on body mass index. The corresponding publication is currently under revision. <strong>Online Supplemental Table 1</strong>: Gene expression-metabolite association summary statistics from 97 metabolites and metabolite ratios and up to 15175 genes calculated seperately in the LIFE-Adult, LIFE-Heart, LIFE-AMI and the Sorb studies. Associations were adjusted for six covariates. <strong>Online Supplemental Table 2</strong>: Random-effects meta-analyzed gene expression-metabolite association summary statistics. P-Values were adjusted for multiple testing using a hierarchical adjustment procedure both on local (within phenotypes) and on global (across phenotypes) level. <strong>Online Supplemental Table 3</strong>: Single-study association results needed for checking mediation analysis assumptions and for calculating mediation statistics. Only gene expression probe-metabolite pairs that associated significantly at hierarchical FDR=5% in the gene-expression-metabolite association meta-analysis qualified for these associations.The following Associations were tested: gene expression probes ~ metabolites, log-BMI ~ metabolites log-BMI ~ gene expression, log-BMI ~ gene expression + metabolite. Associations were adjusted for six covariates. P-values <strong>Online Supplemental Table 4</strong>: Meta-analyzed association results needed for checking mediation analysis assumptions and for calculation mediation statistics. <strong>Online Supplemental Table 5: </strong>Mediation analysis summary statistics. Mediations of gene expression effects (exposure) via metabolite effects (mediatior) and of metabolite effects (exposure) via gene expression effects (mediator) on body mass index (outcome) were tested.
DOI: 10.5281/zenodo.7104774
title: Online Supplemental Tables - An atlas of genome-wide gene expression and metabolite associations and possible mediation effects towards body mass index

description: Summary statistics of metabolite-gene expression associations and mediation analyses of effects on body mass index. The corresponding publication is currently under revision. <strong>Online Supplemental Table 1</strong>: Gene expression-metabolite association summary statistics from 97 metabolites and metabolite ratios and up to 15175 genes calculated seperately in the LIFE-Adult, LIFE-Heart, LIFE-AMI and the Sorb studies. Associations were adjusted for six covariates. <strong>Online Supplemental Table 2</strong>: Random-effects meta-analyzed gene expression-metabolite association summary statistics. P-Values were adjusted for multiple testing using a hierarchical adjustment procedure both on local (within phenotypes) and on global (across phenotypes) level. <strong>Online Supplemental Table 3</strong>: Single-study association results needed for checking mediation analysis assumptions and for calculating mediation statistics. Only gene expression probe-metabolite pairs that associated significantly at hierarchical FDR=5% in the gene-expression-metabolite association meta-analysis qualified for these associations.The following Associations were tested: gene expression probes ~ metabolites, log-BMI ~ metabolites log-BMI ~ gene expression, log-BMI ~ gene expression + metabolite. Associations were adjusted for six covariates. P-values <strong>Online Supplemental Table 4</strong>: Meta-analyzed association results needed for checking mediation analysis assumptions and for calculation mediation statistics. <strong>Online Supplemental Table 5: </strong>Mediation analysis summary statistics. Mediations of gene expression effects (exposure) via metabolite effects (mediatior) and of metabolite effects (exposure) via gene expression effects (mediator) on body mass index (outcome) were tested.
DOI: 10.34740/kaggle/dsv/4432956
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7268445
title: Statistical analysis and dataset for: Invasive ant learning is not affected by seven potential neuroactive chemicals

description: Linked to the preprint published in biorXiv (doi:###).