cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11169315
title: Underwater images collected by an Autonomous Surface Vehicle in Boucan, Réunion - 2023-11-16

description: This dataset was collected by an Autonomous Surface Vehicle in Boucan, Réunion - 2023-11-16. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!
description: The Plancha project is co-financed by the Prefecture of Reunion as part of a 2019-2022 convergence and transformation contract, measure 3.3.1.1
DOI: 10.5281/zenodo.14986569
title: CMIP6 input data usage information for IPCC WGI AR6 figure FAQ3.3.1

description: The record contains information on input dataset usage and citation information from the WCRP Coupled Model Intercomparison Project Phase 6 (CMIP6) for the generation of figure FAQ3.3.1 of the Sixth Assessment Report of Working Group I of the Intergovernmental Panel on Climate Change (IPCC AR6 WGI). CMIP6 data that were used as input to this figure follow the Data Reference Syntax. Persistent Identifiers (PIDs) for data identification (provenance) are available for individual datasets as Handle IDs. DOIs for data citation are available on the following dataset collections: CMIP6 DOIs contain all datasets provided by an Earth System model to a CMIP6 experiment. The data subsets of CMIP6 dataset collections used in the IPCC AR6 WGI have DOIs at this granularity of a model contribution to an experiment. The AR6 subset DOIs are included because they reside in a long-term preservation archive hosted by the IPCC Data Distribution Centre (DDC).

The uploaded human-readable csv file provides a list of datasets/Handle IDs used for the generation of this figure grouped by the corresponding dataset collections they belong to. The machine-actionable json-ld file describes the record as Complex Citation Object (see Agarwal et al., 2024, https://doi.org/10.5281/zenodo.14106602) in a preliminary standard, using the following vocabulary to specify the different functions of the contained Linked Digital Objects: Credit (input dataset collection to be cited/to which credit is to be assigned), Provenance (dataset contributing information to the generation of the DataProduct), archivedAt (dataset collection with long-term preservation), DigitalDocument (referenced papers containing further information), DataProduct (generated final dataset), ImageObject (visualization of the DataProduct), SoftwareSourceCode (software applied to generate the DataProduct), Chapter (IPCC AR6 WGI chapter in which the DataProduct is used/referenced).

Use and cite this record when referring to the generation of IPCC WGI AR6 figure FAQ3.3.1.
DOI: 10.5281/zenodo.14986570
title: CMIP6 input data usage information for IPCC WGI AR6 figure FAQ3.3.1

description: The record contains information on input dataset usage and citation information from the WCRP Coupled Model Intercomparison Project Phase 6 (CMIP6) for the generation of figure FAQ3.3.1 of the Sixth Assessment Report of Working Group I of the Intergovernmental Panel on Climate Change (IPCC AR6 WGI). CMIP6 data that were used as input to this figure follow the Data Reference Syntax. Persistent Identifiers (PIDs) for data identification (provenance) are available for individual datasets as Handle IDs. DOIs for data citation are available on the following dataset collections: CMIP6 DOIs contain all datasets provided by an Earth System model to a CMIP6 experiment. The data subsets of CMIP6 dataset collections used in the IPCC AR6 WGI have DOIs at this granularity of a model contribution to an experiment. The AR6 subset DOIs are included because they reside in a long-term preservation archive hosted by the IPCC Data Distribution Centre (DDC).

The uploaded human-readable csv file provides a list of datasets/Handle IDs used for the generation of this figure grouped by the corresponding dataset collections they belong to. The machine-actionable json-ld file describes the record as Complex Citation Object (see Agarwal et al., 2024, https://doi.org/10.5281/zenodo.14106602) in a preliminary standard, using the following vocabulary to specify the different functions of the contained Linked Digital Objects: Credit (input dataset collection to be cited/to which credit is to be assigned), Provenance (dataset contributing information to the generation of the DataProduct), archivedAt (dataset collection with long-term preservation), DigitalDocument (referenced papers containing further information), DataProduct (generated final dataset), ImageObject (visualization of the DataProduct), SoftwareSourceCode (software applied to generate the DataProduct), Chapter (IPCC AR6 WGI chapter in which the DataProduct is used/referenced).

Use and cite this record when referring to the generation of IPCC WGI AR6 figure FAQ3.3.1.
DOI: 10.15468/dl.987wyh
title: Occurrence Download

description: A dataset containing 246638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Culex pipiens Linnaeus, 1758"
 ]
}

 The dataset includes 246638 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000256-250226093636041/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6kxsd
title: Occurrence Download

description: A dataset containing 28623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus rotundus L."
 ]
}

 The dataset includes 28623 records from 841 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000299-250226093636041/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14930352
title: chr1_region_align_itrails
DOI: 10.5281/zenodo.14930353
title: chr1_region_align_itrails
DOI: 10.5281/zenodo.14930374
title: chr1_region_align_itrails
DOI: 10.5281/zenodo.14930137
title: Run files, input data, and output results from online and offline biogeochemical simulations using the Offline Fennel model in ROMS

description: This repository contains the necessary run files, input data, and output files required to reproduce the simulations and results presented in the paper titled "Offline Fennel: A High-Performance and Computationally Efficient Biogeochemical Model within the Regional Ocean Modeling System (ROMS)" - implementation in the Northern Gulf of Mexico. These resources facilitate the replication of the model's performance and results, enabling further research and validation of the findings.
DOI: 10.5281/zenodo.14930138
title: Run files, input data, and output results from online and offline biogeochemical simulations using the Offline Fennel model in ROMS

description: This repository contains the necessary run files, input data, and output files required to reproduce the simulations and results presented in the paper titled "Offline Fennel: A High-Performance and Computationally Efficient Biogeochemical Model within the Regional Ocean Modeling System (ROMS)" - implementation in the Northern Gulf of Mexico. These resources facilitate the replication of the model's performance and results, enabling further research and validation of the findings.
DOI: 10.15468/dl.e95pkc
title: Occurrence Download

description: A dataset containing 28623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus rotundus L."
 ]
}

 The dataset includes 28623 records from 841 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000297-250226093636041/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8cfwp
title: Occurrence Download

description: A dataset containing 6411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphagnum russowii Warnst.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 6411 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007476-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcjct9
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nudibranchia"
 ]
}

 The dataset includes 105 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132678-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.budq9m
title: Occurrence Download

description: A dataset containing 113773 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera physalus (Linnaeus, 1758)"
 ]
}

 The dataset includes 113773 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066857-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb0qmf
title: Occurrence Download

description: A dataset containing 207993 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eryngium L."
 ]
}

 The dataset includes 207993 records from 815 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009420-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9wk8a
title: Occurrence Download

description: A dataset containing 2322044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1964-2021"
 ]
}

 The dataset includes 2322044 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343981-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnapqq
title: Occurrence Download

description: A dataset containing 12017 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ichtyofauna of main rivers and floodplain lakes in Ukraine"
 ]
}

 The dataset includes 12017 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066845-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwwp84
title: Occurrence Download

description: A dataset containing 120673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Cathartes aura (Linnaeus, 1758)"
 ]
}

 The dataset includes 120673 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025963-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w69wbm
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Phoenicoparrus andinus (Philippi, 1854)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 2 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023538-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8q2uc
title: Occurrence Download

description: A dataset containing 4708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 8.4516524408136",
 "DecimalLongitude is less than 8.454711993998",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 4708 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007465-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.11umts
title: Occurrence Download

description: A dataset containing 1016 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2008-2009",
 "Geometry POLYGON((-89.5166 41.50446,-88.3905 41.47566,-88.37402 41.94315,-89.56055 41.95132,-89.5166 41.50446))",
 "DatasetKey is Great Backyard Bird Count",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1016 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005781-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9z93g
title: Occurrence Download

description: A dataset containing 11513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Castor canadensis Kuhl, 1820",
 "Year 1960-2020"
 ]
}

 The dataset includes 11513 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110339-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/y7y-chx-fza
title: Viola riviniana Rchb.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0023122.10fu
title: SH0023122.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/704-n5q-mc2
title: Epilobium anagallidifolium Lam.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xmp-d8x-qfk
title: Viola tricolor L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v6j-zmk-2g9
title: Viola tricolor subsp. tricolor

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ek5-b38-60b
title: Epilobium anagallidifolium Lam.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/y5w-fzv-8jj
title: Viola stagnina Kit.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0023123.10fu
title: SH0023123.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/qje-9dl-nkp
title: Epilobium anagallidifolium Lam.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zwe-rw1-k4h
title: Epilobium anagallidifolium Lam.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0023124.10fu
title: SH0023124.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/ehk-3rf-nyc
title: Viola tricolor L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/lhd-4et-mm8
title: Aegopodium podagraria L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0023125.10fu
title: SH0023125.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3535/bkw-p0k-dq2
title: Aegopodium podagraria L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/g02-4ty-lcn
title: Viola tricolor L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15156/bio/sh0023126.10fu
title: SH0023126.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.