cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/38j8b6s2mx
title: 1000 Movie Reviews (Review + Attached rating + Sentiment polarity) for Reputation Generation

description: We have created manually 10 datasets for 10 different movies, each one contains 100 reviews (comment + rating + sentiment polarity) randomly extracted and we made sure that the datasets are representatives based on IMDb users weighted average vote. For each movie, we have created 100 text files named from 1 to 100, each one contains an opinion towards the target movie expressed in natural language (English). Furthermore, we have created a text file named "rating.txt" that contains an array of numbers, each number represents the rating (numeric scale ranging from 1 to 10) attached to a specific opinion towards the target movie. Also we have created a text file named "polarity.txt" that contains an array of 0 and 1. 0 stands for a negative review and 1 stands for positive review. This is what the rating file looks like: rating = [ 9, 10, 3, ...................] Interpretation: The user that posted the review stored in file "1.txt" has given a 9/10 as rating towards the target movie. The user that posted the review stored in file "2.txt" has given a 10/10 as rating towards the target movie. The user that posted the review stored in file "3.txt" has given a 3/10 as rating towards the target movie. This is what the polarity file looks like: polarity = [1, 1, 0, ...................] Interpretation: The review stored in file "1.txt" holds positive opinion towards the target movie. The review stored in file "2.txt" holds positive opinion towards the target movie. The review stored in file "3.txt" holds negative opinion towards the target movie. We mention that we have annotated manually the sentiment polarity of each review.
DOI: 10.17632/hdcgjpzr3y
title: STREAmS-2.1: Supersonic turbulent accelerated Navier-Stokes solver version 2.1

description: We present STREAmS-2.1, an updated version of the flow solver STREAmS [1], lastly updated in Bernardini et al. Comput. Phys. Commun. 285 (2023) 108644. STREAmS-2.1 merges the features of the curvilinear solver FLEW [2] which is able to simulate three canonical cases, namely the circular arc channel, the curved boundary layer and the airfoil case. Moreover, three new backends are included, i.e., OpenMP (for CPUs), HIP (for AMD GPUs) and OpenMP-offload (tested on Intel GPUs but potentially portable). Finally, in situ visualization layer based on Catalyst2 technology is integrated into the solver to reduce the visualization effort, especially for huge computational grids.
DOI: 10.17632/pr9j7x7nmh
title: Single cell RNA sequence RSEM data from TCGA

description: PanClassif, a method that requires very few and effective genes to detect cancer from RNA-seq data and is able to provide performance gain in several wide range machine learning classifiers.  We have taken 22 types of cancer samples from  The  Cancer  Genome  Atlas  (TCGA)  having  8287  cancer samples and  680  normal samples. The expression counts of the datasets were calculated using RSEM. Folders with "_smoothed" names contain smoothed data which are smoothed using "k-NN smoothing". A python package is made available for use (https://pypi.org/project/panclassif/#description).
DOI: 10.6084/m9.figshare.12066711.v1
title: SURGICAL RESOURCES latestmarch2016.xlsx

description: Surgical resources in South Africa according to province (2016)
DOI: 10.6084/m9.figshare.1330142.v3
title: Nonlinear spike-and-slab sparse coding for interpretable image encoding. PLOS ONE

description: 2) Realistic occlusion dataset This dataset contains realistic occlusions and controlled forms of sparse structure -- it is a realistic artificial dataset consisting of true occlusions (data is created by actual occlusions and not following any computational model for its generation). The data was generated using the Python Image Library (PIL) to draw hundreds of overlapping edges/strokes in a 256 × 256 pixel image: each stroke had an integer intensity between (1, 255), a width between (2, 4) pixels, and a length, starting, and ending position drawn independently from a uniform distribution. The image was then cut into overlapping D = 9 × 9 patches, each of which contained k ∈ (0, 5) overlapping strokes, for N = 61009. Gaussian noise of σ = 25 and μ = 0 was then independently added to each patch. Additionally, the dataset also contains the corresponding (automatically obtained) labels for each image, indicating the ground-truth number of occluding strokes k ∈ (0, 5) per image. Such a dataset represents and isolates challenging aspects of low-level image statistics that are present in all natural images. Particularly, it contains edges of varying intensities and their occlusions.<br>In the corresponding publication, data examples are shown in Figure 5.
DOI: 10.6084/m9.figshare.21541560.v2
title: Functional traits and environment jointly determine the spatial scaling of population stability in North American birds

description: Online datasets for "Functional traits and environment jointly determine the spatial scaling of population stability in North American birds" by Hong <em>et al.</em> 2022
DOI: 10.6084/m9.figshare.16709083.v1
title: FernNectar-DataSet-AJB2021.xlsx

description: The dataset contains (a) total sugar concentrations and (b) sugar proportions (glucose, fructose, and sucrose) of nectar samples of leaf nectaries of fern species of Botanical Gardens. Methodological details are given in Mehltreter et al. (2022): Nectaries in ferns: taxonomic distribution, structure, function and sugar composition. American Journal of Botany 109(1):46-57.
DOI: 10.6084/m9.figshare.27111106.v4
title: <b>A global dataset on mungbean for managing seed yield and quality</b>

description: <b>Mungbean, a protein- and nutrient-rich legume widely grown in Asian countries, is now expanding to other regions. With increasing global demand for nutritious foods and more sustainable agricultural practices, mungbean represents a valuable opportunity to diversify food systems and improve global nutrition. However, management practices to optimize seed yield and quality (including seed oil and protein concentration) remain largely unexplored due to the recent introduction of this crop in many parts of the world. This study aims to create a global open dataset of key crop management practices and their impact on seed</b><b> </b><b>yield parameters and quality.</b><b> </b><b>This global dataset included 227 studies published between 1984 and 2023 period, comprising 2,154 observations. The dataset focuses on key agronomic practices, including fertilization, irrigation, row spacing, seeding rate, and planting date. By providing comprehensive insights into mungbean cultivation, this open-access dataset enables researchers and agronomists to optimize management practices, identify research gaps, and enhance seed yield and nutritional quality. It serves as a valuable tool for improving food security and sustainable agriculture in developing regions.</b>
DOI: 10.6084/m9.figshare.28828265.v1
title: SupplementaryMaterial

description: Two main hypotheses have been proposed to explain the function of ultraviolet (UV) reflection in avian eggs. The UV resistance hypothesis suggests that high UV reflectance protects against solar exposure in open nests, whereas the egg detectability hypothesis posits that higher UV reflectance helps to stand out against the dark background of the nest, making the eggs easier for parents to locate in enclosed nests. Therefore, eggshell reflection in the UV spectrum may serve multiple, possibly even opposing forces, including UV protection and visual signaling. We tested these two hypotheses using large-scale comparative analyses of eggshell UV reflection for over 500 avian species while considering the influence of various ecological, life history, and environmental traits associated with light exposure. Likewise, although no full support was found for either of the two hypotheses, two clades—passerines and Charadriiformes—exhibited notably high levels of UV reflectance. In both clades, species with higher UV reflectance values are predominantly nesting in open nests, supporting the UV resistance hypothesis. This research contributes to a deeper understanding of the mechanisms driving UV coloration in avian eggs and unravels the interplay between life history traits potentially associated with UV reflectance in specific clades under variable nesting conditions.
DOI: 10.6084/m9.figshare.28943903.v1
title: 16S clean data from the root nodules of different soybean cultivars

description: 16S clean data from the root nodules of different soybean cultivars planted in the soil with different pH values
DOI: 10.6084/m9.figshare.14178446.v1
title: Human data

description: This is a compressed dataset containing 4 files: 1) "raw_count_data_filtered.txt" (1.3GB): raw read counts of genes in 8,796 human bulk RNA-seq samples. 2) "logCombat_UQ_log10.txt" (5.1GB): the RNA-seq data after upper-quartile (UQ) normalization, and batch effect correction using ComBat. According to our study this is in general the best processing workflow for this data. Values are log10 values after addition of a small pseudo count. 3) "annotation_data.txt" (297KB): a table with the sample ID, study ID, and assigned cell type or tissue of each RNA-seq sample in this dataset. 4) "cell_types_vs_index.txt" (1.2KB): a list of each cell type and tissue in this dataset, along with their sample counts.
DOI: 10.6084/m9.figshare.16652752.v1
title: Figshare_Network files.rar

description: These data are the network input data for COVID-19 one-year analysis. They can be opened in Gephi or VosViewer software.
DOI: 10.6084/m9.figshare.2067087.v2
title: Altered activation in cerebellum contralateral to unilateral thalamotomy may mediate tremor suppression in Parkinson’s disease: A short-term regional homogeneity fMRI study

description: lPD-images data from "Altered activation in cerebellum contralateral to unilateral thalamotomy may mediate tremor suppression in Parkinson’s disease: A short-term regional homogeneity fMRI study".files with name "smReHo_nXX.nii" and "smReHo_NCXX.nii" are referred to healthy subjects;files with name "smReHo_subXXa.nii" are referred to TD PD in the pre-surgical condition;files with name "smReHo_subXXb.nii" are referred to TD PD in the post-surgical condition;<br><br>
DOI: 10.6084/m9.figshare.25556721.v2
title: 772 PileBetaG sourced qpss data

description: These data were sourced by the literature (Wu X.Z., Liu H., Wang R.K. Determination of geometric reliability index of piles at site-specific scale: case studies. Proceedings of the Institution of Civil Engineers: Geotechnical Engineering, 2023, 176(2):118-131.) https://doi.org/10.1680/jgeen.20.00204 The qpss file can be opened by any text editor, such as notepad or editplus. The tested load-settlement data for each curve were saved in the qpss file at a construction site. The data format of these qpss files are as follows: Q11 s11 Q12 s12 ... ... Q1k s1k
DOI: 10.6084/m9.figshare.28938005.v3
title: SMT_ImageSet

description: This dataset is designed for research and development in surface-mount technology (SMT) image enhancement, defect detection, and visual recognition under varying illumination and imaging conditions.
DOI: 10.6084/m9.figshare.5129371.v1
title: Supplementary Material for: Neonatal Marfan Syndrome: Report of a Case with an Inherited Splicing Mutation outside the Neonatal Domain

description: We report a child and her mother affected by Marfan syndrome. The child presented with a phenotype of neonatal Marfan syndrome, revealed by acute and refractory heart failure, finally leading to death within the first 4 months of life. Her mother had a common clinical presentation. Genetic analysis revealed an inherited <i>FBN1</i> mutation. This intronic mutation (c.6163+3_6163+6del), undescribed to date, leads to exon 49 skipping, corresponding to in-frame deletion of 42 amino acids (p.Ile2014_Asp2055del). <i>FBN1</i> next-generation sequencing did not show any argument for mosaicism. Association in the same family of severe neonatal and classical Marfan syndrome illustrates the intrafamilial phenotype variability.
DOI: 10.6084/m9.figshare.861045.v1
title: Mouse PyX kinematic dataset

description: Raw data of over 200 gait-related variables obtained via high-speed kinematic analysis in mice with unilateral corticospinal tract injury (or sham-injured mice). Please contact me with any questions/further details. Associated with publication: Harel NY, Yigitkanli K, Fu Y, Cafferty WB, Strittmatter SM. Multimodal exercises simultaneously stimulating cortical and brainstem pathways after unilateral corticospinal lesion. Brain Res. 2013 Nov 13;1538:17-25. doi: 10.1016/j.brainres.2013.07.012.
DOI: 10.17632/8vxrc5gsb8
title: An open source code for two-phase rarefied flows: rarefiedMultiphaseFoam

description: This paper presents the development and benchmarking tests of an open source code for providing solutions of two-phase rarefied flows. The solver is named in rarefiedMultiphaseFoam and it is developed in OpenFOAM, based on dsmcFoamPlus, which is used for the rarefied gas phase. The solver can produce both steady and transient results for arbitrary 2D/3D two-phase rarefied flows and includes a phase change model for materials that experience melting and solidification processes. The benchmarking tests include momentum and heat exchange between gas phase and solid phases, particle phase change, a converging nozzle that creates a solid particle beam, and transport of solid particles. The tests yield good agreement with analytical and experimental data where available, and are compared to previous numerical results from the literature.
DOI: 10.6084/m9.figshare.12416084.v1
title: Supplementary Material for: Acute Kidney Injury Caused by TAFRO Syndrome in a Chinese Patient: Efficacy of Long-Term Corticosteroids Combined with Bortezomib and Cyclophosphamide

description: <b><i>Introduction:</i></b> Thrombocytopenia, ascites, myelofibrosis, renal dysfunction, and organomegaly (TAFRO) syndrome is a newly recognized and rare clinical subtype of Castleman disease. Renal involvement in TAFRO syndrome usually presents with mild proteinuria, microscopic hematuria, and acute renal injury requiring temporary renal replacement. There is no standard therapy available and treatment failures are common, leading to a poor prognosis. We report a case of acute renal failure caused by TAFRO syndrome, successfully managed by long-term corticosteroids combined with bortezomib and cyclophosphamide. <b><i>Case Presentation:</i></b> The patient was a 52-year-old female who presented with fever, anasarca, oliguria, and abdominal distension at first. She progressed rapidly to anuric renal failure requiring hemodialysis. She also demonstrated thrombocytopenia, anemia, coagulopathy, and a hyperinflammatory status. Her CT scan showed severe polyserositis, splenomegaly, and lymphadenopathy. Her serum vascular epithelial growth factor level was significantly elevated. Axillary lymph node biopsy showed hyaline-vascular type Castleman disease, supporting the diagnosis of TAFRO syndrome. Her renal function recovered after high-dose steroids and supportive treatment. A weekly dosing regimen of bortezomib, cyclophosphamide, and dexamethasone combined with medium dose prednisone in between were deployed. Her blood cell count and renal function remained stable after 6 months. The inflammation was suppressed and the polyserositis resolved completely. <b><i>Conclusion:</i></b> TAFRO syndrome is rare and has a poor prognosis due to the lack of standard treatment. Our patient might be the first TAFRO case successfully treated by bortezomib, cyclophosphamide, and corticosteroids.
DOI: 10.6084/m9.figshare.5127373.v1
title: Supplementary Material for: One-Year Survival and Renal Function Recovery of Acute Kidney Injury Patients with Chronic Heart Failure

description: <b><i>Objective:</i></b> To describe and analyze the clinical characteristics of acute kidney injury (AKI) patients with preexisting chronic heart failure (CHF) and to identify the prognostic factors of the 1-year outcome. <b><i>Methods:</i></b> A total of 120 patients with preexisting CHF who developed AKI between January 2005 and December 2010 were enrolled. CHF was diagnosed according to the European Society of Cardiology guidelines, and AKI was diagnosed using the RIFLE criteria. Clinical characteristics were recorded, and nonrecovery from kidney dysfunction as well as mortality were analyzed. <b><i>Results:</i></b> The median age of the patients was 70 years, and 58.33% were male. 60% of the patients had an advanced AKI stage (‘failure') and 90% were classified as NYHA class III/IV. The 1-year mortality rate was 35%. 25.83% of the patients progressed to end-stage renal disease after 1 year. Hypertension, anemia, coronary atherosclerotic heart disease and chronic kidney disease were common comorbidities. Multiple organ dysfunction syndrome (MODS; OR, 35.950; 95% CI, 4.972-259.952), arrhythmia (OR, 13.461; 95% CI, 2.379-76.161), anemia (OR, 6.176; 95% CI, 1.172-32.544) and RIFLE category (OR, 5.353; 95% CI, 1.436-19.952) were identified as risk factors of 1-year mortality. For 1-year nonrecovery from kidney dysfunction, MODS (OR, 8.884; 95% CI, 2.535-31.135) and acute heart failure (OR, 3.281; 95% CI, 1.026-10.491) were independent risk factors. <b><i>Conclusion:</i></b> AKI patients with preexisting CHF were mainly elderly patients who had an advanced AKI stage and NYHA classification. Their 1-year mortality and nonrecovery from kidney dysfunction rates were high. Identifying risk factors may help to improve their outcome.
DOI: 10.17632/rbrywry2my
title: Proterozoic to Phanerozoic Tectonism in Southwestern Montana Basement Ranges Constrained by Low Temperature Thermochronometric Data

description: This supporting information includes all zircon and apatite (U-Th)/He data collected for the manuscript "Proterozoic to Phanerozoic Tectonism in Southwestern Montana Basement Ranges Constrained by Low Temperature Thermochronometric Data" in Kaempfer et al. (2021).
DOI: 10.6084/m9.figshare.6270434.v1
title: Tract probability maps for automated fiber quantification

description: These images contain probability maps for 20 major white matter tracts, based on the Johns Hopkins template (Hua K, Zhang J, Wakana S, Jiang H, Li X, et al. (2008) Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage 39: 336–347). The template used is the one that is provided together with the FSL software (and downloaded from: https://github.com/vistalab/vistasoft/blob/master/mrDiffusion/templates/MNI_JHU_tracts_prob.nii.gz). The atlas was resampled to the standard MNI T2-weighted template, and each volume was extracted into a separate file based on https://github.com/vistalab/vistasoft/blob/master/mrDiffusion/templates/MNI_JHU_tracts_prob.txt. The code for this transformation is provided in a Jupyter notebook.
DOI: 10.17632/vk9pf5nf7v
title: Architecture for a Trustworthy Quantum Chatbot [dataset]

description: This dataset contains all the materials and results used in the development and empirical validation of C4Q 2.0. The files are organized into two main directories: bakend_testing and empirical_validation. Below is a brief overview of their contents:
- app/ - Contains the full source code of C4Q at the state of the software at the time of submitting this paper, allowing for reproducibility and further development. The frontend’s node_modules directory is not included, but these dependencies can be generated by following the installation instructions provided in the README.md file.

- README.md – A guide detailing how to locally set up and run C4Q.

- bakend_testing/ - Contains data from the evaluation of C4Q’s backend components:
 *reportBackendC4Q2.0.html: An HTML report generated by running 189 tests on the backend of C4Q.
 *classLLM_20241110101327.pth_training_metrics.csv: A CSV file documenting the Classification LLM’s training and validation metrics, including training loss, validation loss, training accuracy, and validation accuracy for each epoch.
 *qaLLM_evaluation_metrics.txt: A text file listing exact match and F1 metrics per epoch for the QA LLM.

- create_data/ – Includes the scripts used to generate and curate training data for the classification LLM and the QA LLM.

- empirical_validation/ - Includes data from the empirical evaluation of C4Q against other chatbots:
 *Directories named by model (e.g., openai-o1/, deepseek-coder_33b/, deepseek-r1/, etc.): Each directory contains the raw answers produced by the respective model in response to our set of quantum computing and software engineering questions.
 *prompts.txt: A text file with the full list of prompts used during the empirical evaluation.
 *requirements_qiskit0.46.3: A requirements file for Python dependencies used to create an environment with a Qiskit versions &lt;1.0.0, enabling code snippet testing under older Qiskit releases.
 *requirements_qiskit1.3.1: A requirements file for Python dependencies used to create an environment with a Qiskit versions &gt;= 1.0.0, ensuring reproducible tests under newer releases.
 *results.xlsx: An Excel spreadsheet containing the empirical evaluation outcomes, including correct, incomplete, and incorrect answer rates for each model, under both Qiskit environments.
 *script_gates.sh: A shell script that automates prompting of OLAMA’s deepseek-coder:33b and starcoder2:15b models with gate-related quantum questions.
 *script_SE.sh: A shell script that automates prompting of OLAMA’s deepseek-coder:33b and starcoder2:15b models with software engineering problem questions.
DOI: 10.6084/m9.figshare.28519502.v1
title: Demo_profiler_database

description: Demo profiler database v1.0
DOI: 10.6084/m9.figshare.4981172.v2
title: DCE-MRI Data

description: DCE-MRI DICOM-RT files as well as T1 maps with 6 various flip angles are provided
DOI: 10.17632/6yhwwt57yp
title: Dataset describing the growth pattern, amino acid and fatty acid profile of five indigenous marine microalgae species of Bangladesh

description: This data provides the growth pattern, presence and its percentages in the amount of amino acid and fatty acid content in the selected five indigenous microalgae species with mentioning essential and non-essential classifications
DOI: 10.17632/cpbcg7c5td
title: Low molecular weight organic acids mobilize soil organic phosphorus for enzymatic hydrolysis in a temperate montane peatland

description: Raw data and R code for the the manuscript entitled "Low molecular weight organic acids mobilize soil organic phosphorus for enzymatic hydrolysis in a temperate montane peatland".
DOI: 10.6084/m9.figshare.19747333.v1
title: GSE70630

description: 6 primary untreated grade II oligodendrogliomas.
DOI: 10.6084/m9.figshare.14072108.v1
title: ICMR –Task Force Study on the incidence, mortality, morbidity and socio-economic burden of Snakebite in India: A study protocol

description: The data relates to informed and questionnaire for data collection for epidemiological and economic burden estimation of snakebites in India.