cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bqhxqp
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solter liber Navás, 1912"
 ]
}

 The dataset includes 73 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046857-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5063/f1t1524r
title: Bark myxomycetes in Costa Rica's urban area

description: Myxomycetes are amoebae that disperse through spores and are useful for addressing ecological questions on microorganisms. The study of urban myxomycete dynamics is incipient but a few attempts in the Neotropics have been carried out. In Costa Rica, myxomycetes have been well studied in forested areas, but not that much in urban situations. In order to document myxomycetes in Costa Rica´s largest urban extent for an evaluation of the degree to which their presence is related to air quality and chemical values associated with woody substrates. For this, a two-year, double protocol survey for myxomycetes was carried out in 12 locations within Costa Rica´s Metro Area. Both air quality and chemical values associated with bark in the same locations were also obtained. A total of 32 morphospecies of myxomycetes were identified and higher biodiversity values were found in the southern portion of the Metro Area. A northern study location in Heredia was the exception to this pattern. Response variables showed moderate correlations with copper, zinc, and air quality variables; and multiple regression analyses demonstrated to be highly correlated with Shannon´s Diversity Index. This dataset confirms the presence of a core of myxomycete species in Costa Rica’s Metro Area and proposes both a primary and a secondary level of ecological control of myxomycetes in urban systems
DOI: 10.15468/dl.zxqr25
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.27967 -35.268559, 148.27967 -35.277543, 148.284161 -35.277543, 148.284161 -35.273051, 148.288653 -35.273051, 148.288653 -35.268559, 148.27967 -35.268559))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046858-240626123714530/datasets/export for details.
DOI: 10.15468/dl.4ahg65
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.247609 -35.268559, 149.254347 -35.268559, 149.254347 -35.266314, 149.247609 -35.266314, 149.247609 -35.268559)), ((149.247609 -35.268559, 149.243118 -35.268559, 149.243118 -35.273051, 149.247609 -35.273051, 149.247609 -35.268559)))"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046859-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4u58w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.541809 -35.273051, 149.541809 -35.279788, 149.5463 -35.279788, 149.5463 -35.273051, 149.541809 -35.273051))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046861-240626123714530/datasets/export for details.
DOI: 10.15468/dl.vfsnsc
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solter liber Navás, 1912"
 ]
}

 The dataset's 1 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046855-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncym34
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.329697 -35.266314, 147.329697 -35.273051, 147.331943 -35.273051, 147.331943 -35.275297, 147.325205 -35.275297, 147.325205 -35.279788, 147.334188 -35.279788, 147.334188 -35.275297, 147.340926 -35.275297, 147.340926 -35.277543, 147.345417 -35.277543, 147.345417 -35.268559, 147.336434 -35.268559, 147.336434 -35.266314, 147.334188 -35.266314, 147.334188 -35.268559, 147.331943 -35.268559, 147.331943 -35.266314, 147.329697 -35.266314))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046864-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ktphkd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.475674 -35.275297, 147.47792 -35.275297, 147.47792 -35.268559, 147.475674 -35.268559, 147.475674 -35.275297)), ((147.475674 -35.275297, 147.471182 -35.275297, 147.471182 -35.279788, 147.475674 -35.279788, 147.475674 -35.275297)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046865-240626123714530/datasets/export for details.
DOI: 10.5063/f1p849ck
title: Bark myxomycetes in Costa Rica's urban area along with environmental data

description: Myxomycetes are amoebae that disperse through spores and are useful for addressing ecological questions on microorganisms. The study of urban myxomycete dynamics is incipient but a few attempts in the Neotropics have been carried out. In Costa Rica, myxomycetes have been well studied in forested areas, but not that much in urban situations. In order to document myxomycetes in Costa Rica´s largest urban extent for an evaluation of the degree to which their presence is related to air quality and chemical values associated with woody substrates. For this, a two-year, double protocol survey for myxomycetes was carried out in 12 locations within Costa Rica´s Metro Area. Both air quality and chemical values associated with bark in the same locations were also obtained. A total of 32 morphospecies of myxomycetes were identified and higher biodiversity values were found in the southern portion of the Metro Area. A northern study location in Heredia was the exception to this pattern. Response variables showed moderate correlations with copper, zinc, and air quality variables; and multiple regression analyses demonstrated to be highly correlated with Shannon´s Diversity Index. This dataset confirms the presence of a core of myxomycete species in Costa Rica’s Metro Area and proposes both a primary and a secondary level of ecological control of myxomycetes in urban systems
DOI: 10.15468/dl.drgfcs
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.245983 -35.279788, 148.245983 -35.286526, 148.250474 -35.286526, 148.250474 -35.279788, 148.245983 -35.279788))"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046866-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vznu5n
title: Occurrence Download

description: A dataset containing 2193910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Continent derived from coordinates, Country derived from coordinates, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza citrinella Linnaeus, 1758"
 ]
}

 The dataset includes 2193910 records from 3523 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046860-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.osuxit
title: Occurrence Download

description: A dataset containing 1150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerastes Laurenti, 1768"
 ]
}

 The dataset includes 1150 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008802-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fezgrd
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Leptopoecile elegans Prjevalsky, 1887"
 ]
}

 The dataset includes 425 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023410-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rckxza
title: Occurrence Download

description: A dataset containing 5862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis ovata (Roth) Roem. & Schult.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 5862 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015034-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9pvet
title: Occurrence Download

description: A dataset containing 66982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "Country is United States of America",
 "Geometry POLYGON((120.67 46.95,120.67 76.85,-128.58 76.85,-128.58 46.95,120.67 46.95))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 66982 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008802-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n96ht
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elatine hungarica Moesz",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015028-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xghke
title: Occurrence Download

description: A dataset containing 4883585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex L."
 ]
}

 The dataset includes 4883585 records from 1123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008802-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6wahu
title: Occurrence Download

description: A dataset containing 4561 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Apalis rufogularis (Fraser, 1843)"
 ]
}

 The dataset includes 4561 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023404-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnu99c
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Erythrura tricolor (Vieillot, 1817)"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023416-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzimk7
title: Occurrence Download

description: A dataset containing 9937555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9937555 records from 903 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008803-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3abhk
title: Occurrence Download

description: A dataset containing 3503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guarea glabra Vahl",
 "HasCoordinate is true",
 "Continent is North America"
 ]
}

 The dataset includes 3503 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006906-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/60wc-r696
title: A Labeled UAV Fault Diagnosis Dataset from Real Flight Experiments for AI-Based Anomaly Detection

description: This study introduces a real-world dataset designed to support fault diagnosis in unmanned aerial vehicles (UAVs) through artificial intelligence–based anomaly detection techniques. To construct the dataset, common failure types were identified through analysis of historical UAV accident reports, followed by the design and execution of flight tests simulating faults in structural, propulsion, and sensor subsystems. A total of 25 flight trials were conducted under both nominal and fault-induced conditions. During each test, multimodal flight data—including positioning, attitude, barometric pressure, control signals, and vibration—were recorded.The collected data were preprocessed and categorized into three distinct segments: original, normal, and error. This structured dataset supports both supervised and unsupervised learning models. To validate its effectiveness, two approaches were evaluated: a supervised model based on a long short-term memory (LSTM) network, and an unsupervised, transformer-based model for time-series anomaly detection. The transformer model achieved an F1-score of 98.12%, precision of 96.31%, recall of 100.00%, and accuracy of 99.18%, outperforming the supervised baseline.These results demonstrate the high reliability and applicability of the proposed dataset for real-time fault detection. The methodology introduced in this study can be extended to other cyber-physical systems requiring high-integrity operational diagnostics. The proposed dataset and labeling framework provide a practical foundation for future research on autonomous safety monitoring and predictive maintenance in UAVs and other intelligent systems.
DOI: 10.5281/zenodo.15042297
title: Global Soil Plasmidome Resource (GSPR)

description: Description

DuckDB database and fasta files of the GSPR, described in the paper [paper_link] and on github.

The phylo_gain tarball contains the trees in nwk format for the soil_vs_soil and soil_vs_all isolates, which were used for the analyses done in the paper for phylogenetic gain

Usage

To query the .db file, you will need to install duckdb. Then you can query it in the command line (e.g. `duckdb soil_plasmid.db -c "SELECT * FROM ptu_derep"`)

To see all tables, take a look at the github repo with the explanations, or query the db in the CLI with `duckdb soil_plasmid.db -c "SHOW TABLES"`

The database is also exported as parquet files for users that may prefer this format
DOI: 10.15468/dl.ra2pnd
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 30,180 30,180 90,-180 90,-180 30))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hydrophis platurus (Linnaeus, 1766)"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006908-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kjpfz
title: Occurrence Download

description: A dataset containing 69421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 69421 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006904-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zy7fh7
title: Occurrence Download

description: A dataset containing 956521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ranunculus acris L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 956521 records from 2952 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006907-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mubaa9
title: Occurrence Download

description: A dataset containing 23188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is inaturalist",
 "MediaType is Image",
 "TaxonKey is Popillia japonica Newman, 1838"
 ]
}

 The dataset includes 23188 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237605-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86whpq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Macrophyte Lake Data",
 "HasGeospatialIssue is false",
 "Country is New Zealand",
 "Modified is 2022-10"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184717-220831081235567/datasets/export for details.
DOI: 10.15468/dl.chs9vw
title: Occurrence Download

description: A dataset listing the 1605 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen)",
 "GadmGid is VIR",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 1605 records were derived from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251156-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nhgb4
title: Occurrence Download

description: A dataset containing 7508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pachyramphus viridis (Vieillot, 1816)"
 ]
}

 The dataset includes 7508 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007013-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdnjkm
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parapediasia teterellus Zincken, 1821",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 144 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184714-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et84dw
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hastingsia atropurpurea Becking"
 ]
}

 The dataset includes 63 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237610-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6rejn
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thoressa varia (Murray, 1876)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 877 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184721-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apw32m
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artemisia eriopoda Bunge"
 ]
}

 The dataset includes 468 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004698-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqb8xb
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epophthalmia Burmeister, 1839",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 202 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184730-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5hjuw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria titovii Juz."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121947-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.