cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18256858
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2025

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2025.

Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.

For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.

Those files were created using the KrigR package.
DOI: 10.5281/zenodo.18256859
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2025

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2025.

Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.

For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.

Those files were created using the KrigR package.
DOI: 10.5061/dryad.321kr
title: Data from: A dedicated network for social interaction processing in the primate brain

description: Primate cognition requires interaction processing. Interactions can reveal
 otherwise hidden properties of intentional agents, such as thoughts and
 feelings, and of inanimate objects, such as mass and material. Where and
 how interaction analyses are implemented in the brain is unknown. Using
 whole-brain functional magnetic resonance imaging in macaque monkeys, we
 discovered a network centered in the medial and ventrolateral prefrontal
 cortex that is exclusively engaged in social interaction analysis.
 Exclusivity of specialization was found for no other function anywhere in
 the brain. Two additional networks, a parieto-premotor and a temporal one,
 exhibited both social and physical interaction preference, which, in the
 temporal lobe, mapped onto a fine-grain pattern of object, body, and face
 selectivity. Extent and location of a dedicated system for social
 interaction analysis suggest that this function is an evolutionary
 forerunner of human mind-reading capabilities.
description: Social_Networks_mapsStatistical maps for the Agents, Action, Social Interaction, Exclusive Social Interaction Network (ESIN) and Physical Interaction contrasts, on the monkey F99 cortical model of the right hemisphere, from the volume-based FFX group analysis. These metric files were generated using the freely available Caret software developed in the Van Essen Laboratory at the Washington University School of Medicine in Saint Louis, Missouri, USA, available at . The metric files can be opened with this program and overlaid on the monkey F99 cortical model of the right hemisphere. Enhanced activation is show as negative values (i.e in blue), due to the use of contrast agent for functional magnetic resonance imaging scanning.
DOI: 10.5061/dryad.rn0bp
title: Data from: Allopreening in birds is associated with parental cooperation over offspring care and stable pair bonds across years

description: Individuals of many species form bonds with their breeding partners, yet
 the mechanisms maintaining these bonds are poorly understood. In birds,
 allopreening is a conspicuous feature of interactions between breeding
 partners and has been hypothesized to play a role in strengthening and
 maintaining pair bonds within and across breeding attempts. Many avian
 species, however, do not allopreen and the relationship between
 allopreening and pair bonding across species remains unexplored. In a
 comparative analysis of allopreening and pair bond behavior, we found that
 allopreening between breeding partners was more common among species where
 parents cooperate to rear offspring. The occurrence of allopreening was
 also associated with an increased likelihood that partners would remain
 together over successive breeding seasons. However, there was no strong
 evidence for an association between allopreening and sexual fidelity
 within seasons or time spent together outside the breeding season.
 Allopreening between partners was also no more common in colonial or
 cooperatively breeding species than in solitary species. Analyses of
 evolutionary transitions indicated that allopreening evolved from an
 ancestral state of either high parental cooperation or high partner
 retention, and we discuss possible explanations for this. Overall, our
 results are consistent with an important role for allopreening in the
 maintenance of avian pair bonds.
description: Measurements of pair
 bond strength in birdsCollated from published
 sources found using Web of Science, Google Scholar and the Alexander
 Library of Ornithology (Bodleian Libraries, University of Oxford, UK), and
 from contacting researchers involved in long-term, detailed behavioural
 studies of the species in question. Parental cooperation scores were
 calculated by Remeš et al. (2015, PNAS). Data were collated in
 Excel.Kenny_ESM_TableS1.xlsxKenny_ESM_PhylogeneticTrees100 phylogenetic trees downloaded from http://birdtree.org. The birdtree.org website accompanies the following study: Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO (2012) The global diversity of birds in space and time. Nature 491: 444-448. http://dx.doi.org/10.1038/nature11631, and the Jetz et al. article in Nature should be cited in the primary reference list of any publication that uses data culled from birdtree.org
DOI: 10.5061/dryad.772h7
title: Data from: Does environmental heterogeneity drive functional trait variation? A test in montane and alpine meadows

description: While community-weighted means of plant traits have been linked to mean
 environmental conditions at large scales, the drivers of trait variation
 within communities are not well understood. Local environmental
 heterogeneity (such as microclimate variability), in addition to mean
 environmental conditions, may decrease the strength of environmental
 filtering and explain why communities support different amounts of trait
 variation. Here, we assess two hypotheses: first, that more heterogeneous
 local environments and second, that less extreme environments, should
 support a broader range of plant strategies and thus higher trait
 variation. We quantified drivers of trait variation across a range of
 environmental conditions and spatial scales ranging from sub-meter to tens
 of kilometers in montane and alpine plant communities. We found that,
 within communities, both environmental heterogeneity and environmental
 means are drivers of trait variation. However, the importance of each
 environmental factor varied depending on the trait. Our results indicate
 that larger-scale trait-climate linkages that hold across communities also
 apply at small spatial scales, suggesting that microclimate variation
 within communities is a key driver of community functional diversity.
 Microclimatic variation provides a potential mechanism for helping to
 maintaining diversity in local communities and also suggests that
 small-scale environmental heterogeneity should be measured as a better
 predictor of functional diversity.
description: Leaf trait
 dataLeaf wet weight (g), dry
 weight (g) and area (square cm) used to calculate leaf
 traits.Supplemental Data
 1_traits.csvPlant height and species
 informationSupplemental Data
 2_height_sp.csvSoil moisure
 valuesSupplemental Data
 3_moisture.csvTemperature
 dataHalf-hour resolution
 temperature data (degrees C) collected by iButtonsSupplemental Data
 4_temperature.csv
DOI: 10.5061/dryad.cq612
title: Data from: Canine brachycephaly is associated with a retrotransposon-mediated missplicing of SMOC2

description: In morphological terms, “form” is used to describe an object’s shape and
 size. In dogs, facial form is stunningly diverse. Facial retrusion, the
 proximodistal shortening of the snout and widening of the hard palate is
 common to brachycephalic dogs and is a welfare concern, as the incidence
 of respiratory distress and ocular trauma observed in this class of dogs
 is highly correlated with their skull form. Progress to identify the
 molecular underpinnings of facial retrusion is limited to association of a
 missense mutation in BMP3 among small brachycephalic dogs. Here, we used
 morphometrics of skull isosurfaces derived from 374 pedigree and
 mixed-breed dogs to dissect the genetics of skull form. Through
 deconvolution of facial forms, we identified quantitative trait loci that
 are responsible for canine facial shapes and sizes. Our novel insights
 include recognition that the FGF4 retrogene insertion, previously
 associated with appendicular chondrodysplasia, also reduces neurocranium
 size. Focusing on facial shape, we resolved a quantitative trait locus on
 canine chromosome 1 to a 188-kb critical interval that encompasses SMOC2.
 An intronic, transposable element within SMOC2 promotes the utilization of
 cryptic splice sites, causing its incorporation into transcripts, and
 drastically reduces SMOC2 gene expression in brachycephalic dogs. SMOC2
 disruption affects the facial skeleton in a dose-dependent manner. The
 size effects of the associated SMOC2 haplotype are profound, accounting
 for 36% of facial length variation in the dogs we tested. Our data bring
 new focus to SMOC2 by highlighting its clinical implications in both human
 and veterinary medicine.
description: Marchant_374_SNP_GenotypesThis compressed file contains the SNP genotypes of the 374 individuals used to conduct the experiments in the Current Biology article, "Canine Brachycephaly is Associated with a Retrotransposon-Mediated Missplicing of SMOC2".
DOI: 10.5061/dryad.6p87s
title: Data from: Aging asexual lineages and the evolutionary maintenance of sex

description: Finite populations of asexual and highly selfing species suffer from a
 reduced efficacy of selection. Such populations are thought to decline in
 fitness over time due to accumulating slightly deleterious mutations or
 failing to adapt to changing conditions. These within-population processes
 that lead non-recombining species to extinction may help maintain sex and
 outcrossing through species level selection. Although inefficient
 selection is proposed to elevate extinction rates over time, previous
 models of species selection for sex assumed constant diversification
 rates. For sex to persist, classic models require that asexual species
 diversify at rates lower than sexual species; the validity of this
 requirement is questionable, both conceptually and empirically. We extend
 past models by allowing asexual lineages to decline in diversification
 rates as they age, i.e., non-recombining lineages “senesce” in
 diversification rates. At equilibrium, senescing diversification rates
 maintain sex even when asexual lineages, at young ages, diversify faster
 than their sexual progenitors. In such cases, the age distribution of
 asexual lineages contains a peak at intermediate values rather than
 showing the exponential decline predicted by the classic model.
 Coexistence requires only that the average rate of diversification in
 asexuals be lower than that of sexuals.
description: HoAgrawal2017_PlotDataData used to create Figures1, 2, 3.
DOI: 10.5061/dryad.45k67
title: Data from: Plasticity contributes to a fine-scale depth gradient in sticklebacks’ visual system

description: The light environment influences an animal’s ability to forage, evade
 predators, and find mates, and consequently is known to drive local
 adaptation of visual systems. However, the light environment may also vary
 over fine spatial scales at which genetic adaptation is difficult. For
 instance, in aquatic systems the available wavelengths of light change
 over a few meters depth. Do animals plastically adjust their visual system
 to such small-scale environmental light variation? Here, we show that in
 threespine stickleback (Gasterosteus aculeatus), opsin gene expression (an
 important determinant of colour vision) changes over a 2-meter vertical
 gradient in nest depth. By experimentally altering the light environment
 using light filters to cover enclosures in a lake, we found that opsin
 expression can be adjusted on a short time frame (weeks) in response to
 the local light environment. This is to our knowledge the smallest spatial
 scale on which visual adjustments through opsin expression have been
 recorded in a natural setting along a continuously changing light
 environment.
description: data and script
 filesFor file details see
 README.Veen
 et al data.zip
DOI: 10.5061/dryad.p8f6n
title: Data from: Symbiont community stability through severe coral bleaching in a thermally extreme lagoon

description: Coral reefs are threatened by climate change as coral-algal symbioses are
 currently living close to their upper thermal limits. The resilience of
 the algal partner plays a key role in determining the thermal tolerance of
 the coral holobiont and therefore, understanding the acclimatory limits of
 present day coral-algal symbioses is fundamental to forecasting corals’
 responses to climate change. This study characterised the symbiont
 community in a highly variable and thermally extreme (Max = 37.5 °C,
 Min = 16.8 °C) lagoon located in the southern Persian/Arabian Gulf using
 next generation sequencing of ITS2 amplicons. Despite experiencing extreme
 temperatures, severe bleaching and many factors that would be expected to
 promote the presence of, or transition to clade D dominance, the symbiont
 communities of the lagoon remain dominated by the C3 variant, Symbiodinium
 thermophilum. The stability of this symbiosis across multiple genera with
 different means of symbiont transmission highlights the importance of
 Symbiodinium thermophilum for corals living at the acclimatory limits of
 modern day corals. Corals in this extreme environment did not undergo
 adaptive bleaching, suggesting they are living at the edge of their
 acclimatory potential and that this valuable source of thermally tolerant
 genotypes may be lost in the near future under climate change.
description: Symbiodinium ITS2
 sequences from the Umm al Quwain lagoonITS2 sequences for
 corals in the UAQ lagoon across two sampling periods.UAQ_LAG_ZIP.zip
DOI: 10.5061/dryad.p12q4
title: Data from: Effects of gene action, marker density, and time since selection on the performance of landscape genomic scans of local adaptation

description: Genomic “scans” to identify loci that contribute to local adaptation are
 becoming increasingly common. Many methods used for such studies have
 assumed that local adaptation is created by loci experiencing antagonistic
 pleiotropy and that the selected locus itself is assayed, and few consider
 how signals of selection change through time. However, most empirical data
 sets have marker density too low to assume that a selected locus itself is
 assayed, researchers seldom know when selection was first imposed, and
 many locally adapted loci likely experience not antagonistic pleiotropy
 but conditional neutrality. We simulated data to evaluate how these
 factors affect the performance of tests for genotype-environment
 association. We found that three types of regression-based analyses
 (linear models, mixed linear models, and latent factor mixed models) and
 an implementation of BayEnv all performed well, with high rates of true
 positives and low rates of false positives, when the selected locus
 experienced antagonistic pleiotropy, and when the selected locus was
 assayed directly. However, all tests had reduced power to detect loci
 experiencing conditional neutrality, and the probability of detecting
 associations was sharply reduced when physically linked rather than
 causative loci were sampled. Antagonistic pleiotropy also maintained
 detectable genotype-environment associations much longer than conditional
 neutrality. Our analyses suggest that if local adaptation is often driven
 by loci experiencing conditional neutrality, genome-scan methods will have
 limited capacity to find loci responsible for local adaptation.
description: Yoder and Tiffin (2017)
 supporting informationThis archive provides
 configuration files for forward population genetic simulations of local
 adaptation, scripts to perform analysis on their results, and a copy of
 data produced by this pipeline. See README file for detailed description
 and annotation.Yoder_and_Tiffin_supporting-information.zip
DOI: 10.5061/dryad.t6j7f
title: Data from: Geochemical analyses reveal the importance of environmental history for blue carbon sequestration

description: Coastal habitats including saltmarshes and mangrove forests can accumulate
 and store significant blue carbon stocks, which may persist for millennia.
 Despite this implied stability, the distribution and structure of
 intertidal-supratidal wetlands is known to respond to changes imposed by
 geomorphic evolution, climatic, sea level and anthropogenic influences. In
 this study, we reconstruct environmental histories and biogeochemical
 conditions in four wetlands of similar contemporary vegetation in SE
 Australia. The objective is to assess the importance of historic factors
 to contemporary organic carbon (C) stocks and accumulation rates. Results
 from the four cores – two collected from marine influenced saltmarshes
 (WAP-M and POR-M) and two from fluvial influenced saltmarshes (WAP-F and
 POR-F) – highlight different environmental histories and preservation
 conditions. High C stocks are associated with the presence of a mangrove
 phase below the contemporary saltmarsh sediments in the POR-M and POR-F
 cores. 13C NMR analyses show this historic mangrove root C to be
 remarkably stable in its molecular composition despite its age, consistent
 with its position in deep sediments. WAP-M and WAP-F cores did not contain
 mangrove root C, however, significant preservation of char C (up to 46% of
 C in some depths) in WAP-F reveals the importance of historic catchment
 processes to this site. Together, these results highlight the importance
 of integrating historic ecosystem and catchment factors into attempts to
 upscale C accounting to broader spatial scales.
description: Kelleway et al - 13CNMR
 -POR-FThis dataset contains
 results of continuous sampling down the depth of core profiles (ITRAX and
 magnetic susceptibility) and results of discrete sampling units (13C NMR
 and particle size characterisation). Methods of analysis are contained
 within the methods section of the published article.Kelleway et al - Geochemical
 analyses reveal the importance of environmental history for blue carbon
 sequestration.xlsx
DOI: 10.5061/dryad.7832m
title: Data from: Identification of an early male-killing agent in the oriental tea tortrix, Homona magnanima

description: Arthropods are frequently infected with inherited symbionts, which
 sometimes confer fitness benefits on female hosts or manipulate host
 reproduction. Early male killing, in which infected males die during
 embryogenesis, is induced by some bacteria, such as Wolbachia and
 Spiroplasma. A female-biased sex ratio has been found in Homona magnanima,
 collected from a tea plantation in Japan. Here, we examined the
 male-killing trait in H. magnanima and identified the agent that induces
 early male killing. The sex ratio distortion (SR) strain produced only
 females and no males, and its egg hatch rate was significantly lower than
 that of the normal (N) strain. The N strain was infected with only
 Wolbachia, whereas the SR strain was infected with both Wolbachia and
 Spiroplasma. Antibiotic treatment with 0.10% tetracycline restored the 1:1
 sex ratio in the SR strain. Females treated with 0.05% tetracycline were
 positive for Spiroplasma but not for Wolbachia and showed a female-biased
 sex ratio, whereas Wolbachia-positive females did not revert to male
 killing. When inoculated with a homogenate of the SR strain female,
 females infected with only Spiroplasma produced female-biased offspring.
 Sequence analysis of the 16S rRNA gene revealed that Spiroplasma sp. of H.
 magnanima belonged to the ixodetis clade. These results indicate that
 Spiroplasma was responsible for male killing in H. magnanima. Late male
 killing is induced in H. magnanima by an RNA-like virus, and therefore
 this is the first case in which different male-killing agents expressed at
 different times in the life cycle have been found within one host species.
description: Fig1Figure
 1Fig2Figure
 2Fig3Figure3Fig4Figure 4Supplemental dataTable of supplemental data
DOI: 10.5061/dryad.r0mn6
title: Data from: Impacts of logging roads on tropical forests

description: Road networks are expanding in tropical countries, increasing human access
 to remote forests that act as refuges for biodiversity and provide
 globally important ecosystem services. Logging is one of the main drivers
 of road construction in tropical forests. We evaluated forest
 fragmentation and impacts of logging roads on forest resilience and
 wildlife, considering the full life cycle of logging roads. Through an
 extensive evidence review we found that for logging road construction,
 corridors between 3 and 66 m (median 20 m) width are cleared, leading to a
 loss of 0.6–8.0 percent (median 1.7%) of forest cover. More severe impacts
 are increased fire incidence, soil erosion, landslides, and sediment
 accumulation in streams. Once opened, logging roads potentially allow
 continued access to the forest interior, which can lead to biological
 invasions, increased hunting pressure, and proliferation of swidden
 agriculture. Some roads, initially built for logging, become converted to
 permanent, public roads with subsequent in-migration and conversion of
 forest to agriculture. Most logging roads, however, are abandoned to
 vegetation recovery. Given the far-reaching impacts of the roads that
 become conduits for human access, its control after the end of logging
 operations is crucial. Strategic landscape planning should design road
 networks that concentrate efficient forest exploitation and conserve
 roadless areas.
description: Literature database used
 for reviewFull literature database
 collected in a pre-selection process and used for further review. Open
 source BibTeX file format (.bib) readable by most reference management
 software.Kleinschroth_Healey_2017.bibFinal selection of referencesSet of references used in the final publication. Provided in open source BibTeX file format (.bib) compatible with most reference manager software.Kleinschroth_Healey_2017_references.bib