cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5667142
title: CHARACTERIZATION OF Fusarium oxysporum ISOLATES AND RESISTANCE OF PASSION FRUIT GENOTYPES TO FUSARIOSIS

description: ABSTRACT Passion fruit wilt, caused by Fusarium spp., is one of the most severe diseases for this crop. Although yellow passion fruit is propagated mostly by seeds, the use of rootstocks tolerant to early death could be a management strategy for cultivation in areas with disease history. Thus, this study characterized Fusarium isolates obtained in Triângulo Mineiro and determined the most suitable genotype to use for grafting to reduce losses caused by this pathogen. Mycelial growth and sporulation of Fusarium isolates, in three different growth media, was quantified by measuring colony diameter and by counting the conidia in Neubauer chamber 10 days after growth in malt extract-agar 2%, PDA or CMA at 22 ± 3ºC and 12 hours lighting. Five days later the color of the colonies was evaluated. The experimental design was a 4x3 factorial completely randomized design, with five replications. Characterization of morphological structures of isolates was done with minimum cultivation in Malt extract-agar 2% amended with sterilized soil + sand (1:1). Three Passiflora species and two seedling types were used as rootstock to evaluate field resistance to fusariosis, in a randomized block design, as a 3x2 factorial, with three Passiflora species (P. alata, P. setacea and P. edulis) and two seedling types (ungrafted or grafted with P. edulis). The medium PDA was the least favorable for mycelial growth of the isolates. The best medium for conidium production was Malt extract and the most sporulating isolates were Fus-01 and Fus-02. Isolate color varied from white to pink to violet. Only Fus-02 and Fus-04 formed macro and microconidia. Shape, dimensions and septa number of macroconidia and microconidia, as well as the presence of characteristic monophyalides allowed the classification of all isolates as Fusarium oxysporum f.sp. passiflorae. Passiflora alata and P. setacea, used as rootstocks for P. edulis in the field, were resistant to fusariosis. Despite its low survival, P. edulis grafted on itsef, promoted similar growth of secondary branches as P. setacea in the field.
DOI: 10.6084/m9.figshare.5667142.v1
title: CHARACTERIZATION OF Fusarium oxysporum ISOLATES AND RESISTANCE OF PASSION FRUIT GENOTYPES TO FUSARIOSIS

description: ABSTRACT Passion fruit wilt, caused by Fusarium spp., is one of the most severe diseases for this crop. Although yellow passion fruit is propagated mostly by seeds, the use of rootstocks tolerant to early death could be a management strategy for cultivation in areas with disease history. Thus, this study characterized Fusarium isolates obtained in Triângulo Mineiro and determined the most suitable genotype to use for grafting to reduce losses caused by this pathogen. Mycelial growth and sporulation of Fusarium isolates, in three different growth media, was quantified by measuring colony diameter and by counting the conidia in Neubauer chamber 10 days after growth in malt extract-agar 2%, PDA or CMA at 22 ± 3ºC and 12 hours lighting. Five days later the color of the colonies was evaluated. The experimental design was a 4x3 factorial completely randomized design, with five replications. Characterization of morphological structures of isolates was done with minimum cultivation in Malt extract-agar 2% amended with sterilized soil + sand (1:1). Three Passiflora species and two seedling types were used as rootstock to evaluate field resistance to fusariosis, in a randomized block design, as a 3x2 factorial, with three Passiflora species (P. alata, P. setacea and P. edulis) and two seedling types (ungrafted or grafted with P. edulis). The medium PDA was the least favorable for mycelial growth of the isolates. The best medium for conidium production was Malt extract and the most sporulating isolates were Fus-01 and Fus-02. Isolate color varied from white to pink to violet. Only Fus-02 and Fus-04 formed macro and microconidia. Shape, dimensions and septa number of macroconidia and microconidia, as well as the presence of characteristic monophyalides allowed the classification of all isolates as Fusarium oxysporum f.sp. passiflorae. Passiflora alata and P. setacea, used as rootstocks for P. edulis in the field, were resistant to fusariosis. Despite its low survival, P. edulis grafted on itsef, promoted similar growth of secondary branches as P. setacea in the field.
DOI: 10.6084/m9.figshare.5667139
title: Gene therapy: advances, challenges and perspectives

description: ABSTRACT The ability to make site-specific modifications to the human genome has been an objective in medicine since the recognition of the gene as the basic unit of heredity. Thus, gene therapy is understood as the ability of genetic improvement through the correction of altered (mutated) genes or site-specific modifications that target therapeutic treatment. This therapy became possible through the advances of genetics and bioengineering that enabled manipulating vectors for delivery of extrachromosomal material to target cells. One of the main focuses of this technique is the optimization of delivery vehicles (vectors) that are mostly plasmids, nanostructured or viruses. The viruses are more often investigated due to their excellence of invading cells and inserting their genetic material. However, there is great concern regarding exacerbated immune responses and genome manipulation, especially in germ line cells. In vivo studies in in somatic cell showed satisfactory results with approved protocols in clinical trials. These trials have been conducted in the United States, Europe, Australia and China. Recent biotechnological advances, such as induced pluripotent stem cells in patients with liver diseases, chimeric antigen receptor T-cell immunotherapy, and genomic editing by CRISPR/Cas9, are addressed in this review.
DOI: 10.6084/m9.figshare.5667139.v1
title: Gene therapy: advances, challenges and perspectives

description: ABSTRACT The ability to make site-specific modifications to the human genome has been an objective in medicine since the recognition of the gene as the basic unit of heredity. Thus, gene therapy is understood as the ability of genetic improvement through the correction of altered (mutated) genes or site-specific modifications that target therapeutic treatment. This therapy became possible through the advances of genetics and bioengineering that enabled manipulating vectors for delivery of extrachromosomal material to target cells. One of the main focuses of this technique is the optimization of delivery vehicles (vectors) that are mostly plasmids, nanostructured or viruses. The viruses are more often investigated due to their excellence of invading cells and inserting their genetic material. However, there is great concern regarding exacerbated immune responses and genome manipulation, especially in germ line cells. In vivo studies in in somatic cell showed satisfactory results with approved protocols in clinical trials. These trials have been conducted in the United States, Europe, Australia and China. Recent biotechnological advances, such as induced pluripotent stem cells in patients with liver diseases, chimeric antigen receptor T-cell immunotherapy, and genomic editing by CRISPR/Cas9, are addressed in this review.
DOI: 10.5281/zenodo.4009038
title: Kinship and Facebook

description: Those dataset are resulting of the Net-Rom project. There are two documents. 1. A Puck document of a kinship of a roma groupe of 1036 people between 1880 and 2020 in eastern romania. 2. the facebook network od friends of 250 of them. all the datasets are anonimized
DOI: 10.5281/zenodo.4009037
title: Kinship and Facebook

description: Those dataset are resulting of the Net-Rom project. There are two documents. 1. A Puck document of a kinship of a roma groupe of 1036 people between 1880 and 2020 in eastern romania. 2. the facebook network od friends of 250 of them. all the datasets are anonimized
DOI: 10.6084/m9.figshare.5667127
title: A Low-Cost Video-Based Reflectometer for Selective Detection of Cu2+ Using Paper-Based Colorimetric Sensors

description: This paper presents a low-cost reflectometer for selective detection of Cu2+. The reflectometer is based on an emission light source using five light-emitting diodes at different wavelengths and a detector using a webcam. The samples were prepared using a filter paper-based colorimetric sensor with ascorbic acid-based quinoxaline derivative. Video analysis using gray color intensity was used to perform both copper ion screening (Cu2+, Pb2+, Cr+3, Ni2+, Fe2+, Sn2+, Mg2+, Cd2+, Ag+ and Co2+) and quantification of Cu2+ in spiked samples. In addition, a multivariate validation was performed. The system proved to be selective to Cu2+ among the screened ions, and its quantification was performed using partial least square regressions. Good linearity (R2 = 0.979, coefficient of determination), low root-mean-square error of prediction (RMSEP = 5.20 × 10-3 mol L-1) and high recovery (93.39-128.64%) were achieved. This method has potential to be employed for rapid and selective determination of Cu2+ in water using low-cost instrumentation.
DOI: 10.6084/m9.figshare.5667127.v1
title: A Low-Cost Video-Based Reflectometer for Selective Detection of Cu2+ Using Paper-Based Colorimetric Sensors

description: This paper presents a low-cost reflectometer for selective detection of Cu2+. The reflectometer is based on an emission light source using five light-emitting diodes at different wavelengths and a detector using a webcam. The samples were prepared using a filter paper-based colorimetric sensor with ascorbic acid-based quinoxaline derivative. Video analysis using gray color intensity was used to perform both copper ion screening (Cu2+, Pb2+, Cr+3, Ni2+, Fe2+, Sn2+, Mg2+, Cd2+, Ag+ and Co2+) and quantification of Cu2+ in spiked samples. In addition, a multivariate validation was performed. The system proved to be selective to Cu2+ among the screened ions, and its quantification was performed using partial least square regressions. Good linearity (R2 = 0.979, coefficient of determination), low root-mean-square error of prediction (RMSEP = 5.20 × 10-3 mol L-1) and high recovery (93.39-128.64%) were achieved. This method has potential to be employed for rapid and selective determination of Cu2+ in water using low-cost instrumentation.
DOI: 10.6084/m9.figshare.5667124
title: Evaluation of melanin production by Sporothrix luriei

description: There is a paucity of studies on the cell biology of Sporothrix luriei, the less common of the pathogenic Sporothrix species worldwide. The production of DHN-melanin, eumelanin, and pyomelanin were evaluated on the mycelial and yeast forms of the S. luriei ATCC 18616 strain. The mycelial form of this species produced only pyomelanin, which protected the fungus against environmental stressors such as ultraviolet light, heat, and cold. The yeast form was unable to produce any of the tested melanin types. The lack of melanin in the parasitic form of S. luriei may be an explanation for its low frequency in human infections.
DOI: 10.6084/m9.figshare.5667124.v1
title: Evaluation of melanin production by Sporothrix luriei

description: There is a paucity of studies on the cell biology of Sporothrix luriei, the less common of the pathogenic Sporothrix species worldwide. The production of DHN-melanin, eumelanin, and pyomelanin were evaluated on the mycelial and yeast forms of the S. luriei ATCC 18616 strain. The mycelial form of this species produced only pyomelanin, which protected the fungus against environmental stressors such as ultraviolet light, heat, and cold. The yeast form was unable to produce any of the tested melanin types. The lack of melanin in the parasitic form of S. luriei may be an explanation for its low frequency in human infections.
DOI: 10.6084/m9.figshare.5667118
title: Pilot design of an efficient, leak-proof and economical flush system

description: ABSTRACT In the last decades, water consumption per capita has been reduced. Nevertheless, several countries look for additional reduction in water consumption through better process of equipment functions. This paper describes a new design for an economical flush system in which there is neither flapper nor gasket that could leak. Prototypes with new design have been made and tested; after a 12 months’ test with one of them, by a family of 4 people, the project had good performance, with reduction in water consumption. This new design does not use gasket, works with two boxes (internal box and external box), presents good drag ability and demonstrates good water efficiency both for 3 L and 6 L flushes.
DOI: 10.6084/m9.figshare.5667118.v1
title: Pilot design of an efficient, leak-proof and economical flush system

description: ABSTRACT In the last decades, water consumption per capita has been reduced. Nevertheless, several countries look for additional reduction in water consumption through better process of equipment functions. This paper describes a new design for an economical flush system in which there is neither flapper nor gasket that could leak. Prototypes with new design have been made and tested; after a 12 months’ test with one of them, by a family of 4 people, the project had good performance, with reduction in water consumption. This new design does not use gasket, works with two boxes (internal box and external box), presents good drag ability and demonstrates good water efficiency both for 3 L and 6 L flushes.
DOI: 10.6084/m9.figshare.5667115
title: Colorimetric Determination of Ascorbic Acid Based on Its Interfering Effect in the Enzymatic Analysis of Glucose: An Approach Using Smartphone Image Analysis

description: The use of digital image analysis as an analytical tool is a reality nowadays, and the use of smartphones stands out due to its high accessibility and practicality. Ascorbic acid (AA) is a natural and essential vitamin available as a supplement as a result of its use in preventing and treating several pathologies. This paper reports a simple, fast and low cost method using smartphone image analysis for quantification of AA based on its interfering effect in the enzymatic colorimetric detection of glucose. Commercial vitamin C tablets were used as prediction set for AA quantification, showing very satisfactory results (relative errors &lt; 4%), where no statistical difference at a 95% confidence level was observed between the AA content estimated by the imaging method and the labeled reference values. As advantages, this method does not use expensive reagents neither laborious procedures to carry out the analysis.
DOI: 10.6084/m9.figshare.5667115.v1
title: Colorimetric Determination of Ascorbic Acid Based on Its Interfering Effect in the Enzymatic Analysis of Glucose: An Approach Using Smartphone Image Analysis

description: The use of digital image analysis as an analytical tool is a reality nowadays, and the use of smartphones stands out due to its high accessibility and practicality. Ascorbic acid (AA) is a natural and essential vitamin available as a supplement as a result of its use in preventing and treating several pathologies. This paper reports a simple, fast and low cost method using smartphone image analysis for quantification of AA based on its interfering effect in the enzymatic colorimetric detection of glucose. Commercial vitamin C tablets were used as prediction set for AA quantification, showing very satisfactory results (relative errors &lt; 4%), where no statistical difference at a 95% confidence level was observed between the AA content estimated by the imaging method and the labeled reference values. As advantages, this method does not use expensive reagents neither laborious procedures to carry out the analysis.
DOI: 10.6084/m9.figshare.5667112
title: Changes in the epidemiology of visceral leishmaniasis in Brazil from 2001 to 2014

description: Abstract INTRODUCTION Visceral leishmaniasis (VL) is a neglected disease, with territorial expansion and regional differences in Brazil that require explanation. This study aimed to describe changes in the epidemiology of VL in Brazil from 2001 to 2014. METHODS The incidence rates, sociodemographic and clinical data, and case evolution were subgrouped from 2001 to 2006 and from 2007 to 2014 and presented descriptively. Spatial distribution of disease incidence rates and changes in the spatial and temporal pattern were examined. RESULTS: In total, 47,859 VL cases were reported in Brazil between 2001 and 2014, with predominance in the Northeast macroregion (55%), though the incidence rate in this region declined between the two study periods. The State of Tocantins had the highest crude rate (26.2/100,000 inhabitants), which was responsible for VL increasing in the North macroregion. VL predominated in the urban zone (70%), in children under 4 years (34%); however, an increase in the incidence of VL in adults older than 40 years was identified, with 12.3% and 31% in the first and second period, respectively. The mapping of crude rates and autochthonous canine cases showed territorial expansion. The temporal distribution of VL was consistent in Brazil in general, with no pattern observed, but regional differences were found. CONCLUSIONS: The incidence of VL is increasing in Brazil. In addition to the State of Tocantins, which had the highest rate, new outbreaks of VL have occurred in the South macroregion of Brazil with small decreases identified in the incidence rate in the Northeast.
DOI: 10.6084/m9.figshare.5667112.v1
title: Changes in the epidemiology of visceral leishmaniasis in Brazil from 2001 to 2014

description: Abstract INTRODUCTION Visceral leishmaniasis (VL) is a neglected disease, with territorial expansion and regional differences in Brazil that require explanation. This study aimed to describe changes in the epidemiology of VL in Brazil from 2001 to 2014. METHODS The incidence rates, sociodemographic and clinical data, and case evolution were subgrouped from 2001 to 2006 and from 2007 to 2014 and presented descriptively. Spatial distribution of disease incidence rates and changes in the spatial and temporal pattern were examined. RESULTS: In total, 47,859 VL cases were reported in Brazil between 2001 and 2014, with predominance in the Northeast macroregion (55%), though the incidence rate in this region declined between the two study periods. The State of Tocantins had the highest crude rate (26.2/100,000 inhabitants), which was responsible for VL increasing in the North macroregion. VL predominated in the urban zone (70%), in children under 4 years (34%); however, an increase in the incidence of VL in adults older than 40 years was identified, with 12.3% and 31% in the first and second period, respectively. The mapping of crude rates and autochthonous canine cases showed territorial expansion. The temporal distribution of VL was consistent in Brazil in general, with no pattern observed, but regional differences were found. CONCLUSIONS: The incidence of VL is increasing in Brazil. In addition to the State of Tocantins, which had the highest rate, new outbreaks of VL have occurred in the South macroregion of Brazil with small decreases identified in the incidence rate in the Northeast.
DOI: 10.6084/m9.figshare.5667109
title: Complete Band Gaps in Nano-Piezoelectric Phononic Crystals

description: We study the band structure of elastic waves propagating in a nano-piezoelectric phononic crystal consisting of a polymeric matrix reinforced by BaTiO3 inclusions in square, rectangular, triangular, honeycomb and Kagomé lattices. We also investigate the influence of inclusion cross section geometry - circular, hollow circular, square and rotated square with a 45º angle of rotation with respect to x and y axes. Plane wave expansion method is used to solve the governing equations of motion of a piezoelectric solid based on classical elasticity theory, ignoring nanoscopic size effects, considering two-dimensional periodicity and wave propagation in the xy plane. Complete band gaps between XY and Z modes are observed for all inclusions and the best performance is for circular inclusion in a triangular lattice. Piezoelectricity influences significantly the band gaps for hollow circular inclusion in lower frequencies. We suggest that nano-piezoelectric phononic crystals are feasible for elastic vibration management in GHz.
DOI: 10.6084/m9.figshare.5667109.v1
title: Complete Band Gaps in Nano-Piezoelectric Phononic Crystals

description: We study the band structure of elastic waves propagating in a nano-piezoelectric phononic crystal consisting of a polymeric matrix reinforced by BaTiO3 inclusions in square, rectangular, triangular, honeycomb and Kagomé lattices. We also investigate the influence of inclusion cross section geometry - circular, hollow circular, square and rotated square with a 45º angle of rotation with respect to x and y axes. Plane wave expansion method is used to solve the governing equations of motion of a piezoelectric solid based on classical elasticity theory, ignoring nanoscopic size effects, considering two-dimensional periodicity and wave propagation in the xy plane. Complete band gaps between XY and Z modes are observed for all inclusions and the best performance is for circular inclusion in a triangular lattice. Piezoelectricity influences significantly the band gaps for hollow circular inclusion in lower frequencies. We suggest that nano-piezoelectric phononic crystals are feasible for elastic vibration management in GHz.
DOI: 10.6084/m9.figshare.5667106
title: Natural environmental water sources in endemic regions of northeastern Brazil are potential reservoirs of viable Mycobacterium leprae

description: BACKGROUND The detection of live Mycobacterium leprae in soil and animals other than humans suggests that the environment plays a role in the transmission of leprosy. OBJECTIVE The objective of this study was to investigate the presence of viable M. leprae in natural water sources used by the local population in five municipalities in the state of Ceará, northeastern Brazil. METHODS Samples were collected from 30 different sources. Viable bacilli were identified by reverse transcriptase polymerase chain reaction (PCR) of the M. leprae gyrA gene and sequencing of the PCR products. Physicochemical properties of each water source were also assessed. FINDINGS M. leprae gyrA mRNA was found in 23 (76.7%) of the water sources. No association was found between depth of the water and sample positivity, nor was there any association between the type of water used by the population and sample positivity. An association between viable M. leprae and temperature and pH was found. Georeferencing showed a relation between the residences of leprosy cases and water source containing the bacterium. MAIN CONCLUSIONS The finding of viable M. leprae in natural water sources associated with human contact suggests that the environment plays an important role in maintaining endemic leprosy in the study region.