cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10802806
title: Temperature, pressure, permebility datasets of a 2D hydrothermal model

description: The numerical datasets are temperatures, pressures, permeabilities of a 2D natural-state hydrothermal system simulated using TOUGH2.

The numerical datasets were used to evaluate a neural network proposed in the following article:

Ishitsuka et al. Modeling unobserved geothermal structures using a physics-informed deep neural network with transfer learning of prior knowledge, under review.

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(Dataset 1: Dataset_Reference.csv, Pretrain_Datasets.zip)

The hydrothermal system had a 2D space with a horizontal width of 2 km and a depth of 1.6 km. The system consists of five geological units with different permeability, and had a fault-controlled permeable region extending vertically. The hydrothermal fluid flowed though the vertical permeable zone.

(Dataset2: Dataset_Reference_Ungaran-Base.csv, Pretrain_Datasets_Ungaran-Base.zip)

The permeability structure of the numerical model is constructed based on the hydrothermal model in Jatmiko et al. (2022). A 10 km long and 5 km deep region of the numerical model is divided into 5,000 elements at 100 m intervals. In the hydrothermal model, the hydrothermal upflow zone is around the summit of the mountain.

Jatmiko BW et al. Resource assessment of Ungaran geothermal field using numerical model and monte carlo simulation. IOP Conference Series: Earth and Environmental Science 2022;1031:2021.

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DOI: 10.6084/m9.figshare.25378288
title: Supplementary Material for: Risk of Hepatocellular Carcinoma by Steatotic Liver Disease and Its Newly Proposed Sub-Classification

description: Introduction: Steatotic liver disease (SLD) is a new overarching term proposed to replace non-alcoholic fatty liver disease (NAFLD) and metabolic dysfunction associated fatty liver disease (MAFLD). Subclassification includes metabolic dysfunction associated steatotic liver disease (MASLD), MASLD with increased alcohol intake (MetALD), and cryptogenic SLD. This study aimed to investigate whether SLD and its subclassification could stratify hepatocellular carcinoma (HCC) risk. Methods: A cohort of 85,119 adults without viral hepatitis or heavy alcohol intake were analyzed for the risk of HCC according to SLD and its subclassification. Fibrosis-4 index (FIB-4) was used to estimate degree of liver fibrosis. Results: During a median follow-up of 11.9 years, HCC was diagnosed in 123 individuals. The incidence rate of HCC per 1,000 person-years was higher in individuals with SLD than in those without SLD (0.197 vs. 0.071, p &lt; 0.001), with an adjusted hazard ratio of 2.02 (95% confidence interval: 1.40-2.92). The HCC incidence rate per 1,000 person-years was 0, 0.180, and 0.648 for cryptogenic SLD, MASLD, and MetALD, respectively. When participants with SLD was further stratified by FIB-4 index, the HCC incidence rate per 1,000 person-years was 0.074 for SLD with FIB-4 &lt; 1.3 and 0.673 for SLD with FIB-4 ≥ 1.3. Of note, HCC risk was substantially high (HCC incidence rate: 1.847 per 1,000 person-years) for MetALD with FIB-4 ≥ 1.3. Conclusions: HCC risk was different by SLD and its subclassification. The utilization of SLD and its subclassification can aid in stratifying HCC risk and facilitate the identification of individuals requiring interventions to mitigate the risk of HCC.
DOI: 10.25946/25265308
title: Lignans in Sesame Sludge

description: Black sesame has a high-value cash crop, multiple applications in terms of health-benefitting compounds in the seed, oil, and pressed seedcake. Previous research efforts and including the warmest season sesame harvesting, opened an opportunity for the CQUniversity in collaboration with the CRC for Northern Australia and Agriventis Technologies Ltd Pty, for further investigation and potential use in future breeding programs. Although, only 525 hectares of land are annually sown in Australia, hence, there is a golden window for Australia to become a leading trader of this product, due to the lack of research in the nutritional compounds of the black sesame seed, oil and pressed seedcake, as well as contributing valuable information allowing farmers to capitalise on this international market. The contribution of this study, particularly in the sesame derivatives, may lead to the recommend guideline for the selection of ideal black sesame seed lines best suited for its expansion in the northern Australia cropping industry, by using material from earlier conducted growing trials
DOI: 10.25946/25265308.v1
title: Lignans in Sesame Sludge

description: Black sesame has a high-value cash crop, multiple applications in terms of health-benefitting compounds in the seed, oil, and pressed seedcake. Previous research efforts and including the warmest season sesame harvesting, opened an opportunity for the CQUniversity in collaboration with the CRC for Northern Australia and Agriventis Technologies Ltd Pty, for further investigation and potential use in future breeding programs. Although, only 525 hectares of land are annually sown in Australia, hence, there is a golden window for Australia to become a leading trader of this product, due to the lack of research in the nutritional compounds of the black sesame seed, oil and pressed seedcake, as well as contributing valuable information allowing farmers to capitalise on this international market. The contribution of this study, particularly in the sesame derivatives, may lead to the recommend guideline for the selection of ideal black sesame seed lines best suited for its expansion in the northern Australia cropping industry, by using material from earlier conducted growing trials
DOI: 10.6084/m9.figshare.25378321
title: Supplementary Material for: How effective is drinking natural mineral water against heartburn from functional dyspepsia, gastroesophageal reflux disease or other causes? A systematic review of clinical intervention studies

description: Background
For centuries, spring and other natural waters have been recommended as external or internal remedies for numerous diseases. For studies that examined the effects of drinking mineral waters against heartburn, gastroesophageal reflux disease (GERD), or functional dyspepsia a systematic review is lacking. 
Objectives
The main aim of this systematic review was to examine the effects of drinking natural mineral waters on heartburn from various causes by identifying all published intervention studies and critically appraising their methods as well as summarizing their results.
Methods
We systematically searched the largest medical literature database MEDLINE, further relevant web sources and gray literature for randomized and non-randomized trials, with or without control groups, up to September 2021 and no language restrictions. Further inclusion criteria were adult patients with heartburn, drinking cure with natural mineral water as intervention, compared to no or other interventions (care-as-usual, waiting list). We defined the reduction of heartburn symptoms and duration of disease episodes as primary and quality of life as secondary outcomes. Two reviewers independently carried out the study quality assessments (risk of bias) using the National Institutes of Health-Study Quality Assessment Tools.
Results
Nine trials comprising 393 patients from Italy, Russia, Ukraine, and Germany fulfilled all inclusion criteria. We identified three randomized controlled trials (all with poor methodological quality), plus six before-after (pre/post) intervention studies without a control group. The intervention groups of the three comparative trials seemed to show a stronger reduction of self-reported heartburn symptoms, and duration of heartburn episodes than the respective control groups, however they all had a poor methodological quality. 
Conclusion
Based on the best available evidence of clinical studies, we cannot recommend or advise against drinking natural mineral waters as a treatment for heartburn. The potential benefits of natural mineral waters that were reported in some studies with a lower evidence level (e.g., lacking a control group) should be verified by good quality randomized clinical trials with adequate comparison groups and longer follow-up periods.
DOI: 10.6084/m9.figshare.25378321.v1
title: Supplementary Material for: How effective is drinking natural mineral water against heartburn from functional dyspepsia, gastroesophageal reflux disease or other causes? A systematic review of clinical intervention studies

description: Background
For centuries, spring and other natural waters have been recommended as external or internal remedies for numerous diseases. For studies that examined the effects of drinking mineral waters against heartburn, gastroesophageal reflux disease (GERD), or functional dyspepsia a systematic review is lacking. 
Objectives
The main aim of this systematic review was to examine the effects of drinking natural mineral waters on heartburn from various causes by identifying all published intervention studies and critically appraising their methods as well as summarizing their results.
Methods
We systematically searched the largest medical literature database MEDLINE, further relevant web sources and gray literature for randomized and non-randomized trials, with or without control groups, up to September 2021 and no language restrictions. Further inclusion criteria were adult patients with heartburn, drinking cure with natural mineral water as intervention, compared to no or other interventions (care-as-usual, waiting list). We defined the reduction of heartburn symptoms and duration of disease episodes as primary and quality of life as secondary outcomes. Two reviewers independently carried out the study quality assessments (risk of bias) using the National Institutes of Health-Study Quality Assessment Tools.
Results
Nine trials comprising 393 patients from Italy, Russia, Ukraine, and Germany fulfilled all inclusion criteria. We identified three randomized controlled trials (all with poor methodological quality), plus six before-after (pre/post) intervention studies without a control group. The intervention groups of the three comparative trials seemed to show a stronger reduction of self-reported heartburn symptoms, and duration of heartburn episodes than the respective control groups, however they all had a poor methodological quality. 
Conclusion
Based on the best available evidence of clinical studies, we cannot recommend or advise against drinking natural mineral waters as a treatment for heartburn. The potential benefits of natural mineral waters that were reported in some studies with a lower evidence level (e.g., lacking a control group) should be verified by good quality randomized clinical trials with adequate comparison groups and longer follow-up periods.
DOI: 10.5281/zenodo.10802827
title: Specutils test dataset for SAMI

description: A subset of the spectra for 24433 for SAMI in order to test SAMI loaders on the astropy/specutils CI.
DOI: 10.5281/zenodo.10802828
title: Specutils test dataset for SAMI

description: A subset of the spectra for 24433 for SAMI in order to test SAMI loaders on the astropy/specutils CI.
DOI: 10.5281/zenodo.10404174
title: Data for An Approximate Skolem Funcion Counter (AAAI-24 paper)

description: The artifact consists of the necessary data to reproduce the results reported in the AAAI-24 Paper titled "An Approximate Skolem Funcion Counter." In particular, the artifact consists of the benchmarks, the log files generated on our computing cluster.
DOI: 10.5281/zenodo.10404173
title: Data for An Approximate Skolem Funcion Counter (AAAI-24 paper)

description: The artifact consists of the necessary data to reproduce the results reported in the AAAI-24 Paper titled "An Approximate Skolem Funcion Counter." In particular, the artifact consists of the benchmarks, the log files generated on our computing cluster.
DOI: 10.5281/zenodo.10689839
title: Data for An Approximate Skolem Funcion Counter (AAAI-24 paper)

description: The artifact consists of the necessary data to reproduce the results reported in the AAAI-24 Paper titled "An Approximate Skolem Funcion Counter." In particular, the artifact consists of the benchmarks, the log files generated on our computing cluster.
DOI: 10.5281/zenodo.10802841
title: The Origin of the Lehmann Discontinuity beneath the Ancient Craton: Insight from the High Pressure-Temperature Elasticity Measurements of Topaz

description: Data sets for the paper "The Origin of the Lehmann Discontinuity beneath the Ancient Craton: Insight from the High Pressure-Temperature Elasticity Measurements of Topaz".
DOI: 10.6084/m9.figshare.25376206.v1
title: Native Ads Dataset

description: The native ads dataset is a collection of news that has the native ads label and other implicit characteristics
DOI: 10.5281/zenodo.10802854
title: Pharmacist research
DOI: 10.5281/zenodo.10802855
title: Pharmacist research
DOI: 10.6084/m9.figshare.25378462
title: Data Set. Flipped Learning.xlsx

description: Dataset for study into the effectiveness on flipped learning in a South Korean EFL setting
DOI: 10.6084/m9.figshare.25378462.v1
title: Data Set. Flipped Learning.xlsx

description: Dataset for study into the effectiveness on flipped learning in a South Korean EFL setting
DOI: 10.5519/qd.4re2oju6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.25378537
title: dataset.RData

description: PA can attenuate the excess mortality risk from prolonged sitting for individuals with osteoporosis and/or osteopenia. The combination of prolonged sedentary behaviour with inactive PA was associated with an increased risk of mortality.
DOI: 10.6084/m9.figshare.25378537.v1
title: dataset.RData

description: PA can attenuate the excess mortality risk from prolonged sitting for individuals with osteoporosis and/or osteopenia. The combination of prolonged sedentary behaviour with inactive PA was associated with an increased risk of mortality.
DOI: 10.6084/m9.figshare.25378570
title: Figure 3 Raw Data - 1540.5

description: 2022-10-29 173708 S PH 50x25um-1540.5cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata<br>
DOI: 10.6084/m9.figshare.25378570.v1
title: Figure 3 Raw Data - 1540.5

description: 2022-10-29 173708 S PH 50x25um-1540.5cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata<br>
DOI: 10.6084/m9.figshare.25378522
title: Genome Annotation of Orchidaceae

description: ###Orchidaceae genome serial number###vpl Vanilla planifoliapeq Phalaenopsis equestrispap Phalaenopsis aphroditedth Dendrobium thyrsiflorumdno Dendrobium nobiledhu Dendrobium huoshanensedch Dendrobium chrysotoxumdca Dendrobium catenatumcsinensis Cymbidium sinensisash Apostasia shenzhenica
DOI: 10.6084/m9.figshare.25378522.v1
title: Dcatena.cds.fa

description: Cds file of Dendrobium catenatum.
DOI: 10.5281/zenodo.10612802
title: [Raw data collection] - Granular skeleton optimisation and influence of the cement paste content in bio-based oyster shell mortar with 100% aggregate replacement

description: Raw data collection

Associated paper information

- Year: 2024 - Journal: Sustainability - DOI/link: https://doi.org/10.3390/su16062297 - Title: Granular skeleton optimisation and influence of the cement paste content in bio-based oyster shell mortar with 100% aggregate replacement  - Authors: Ana Cláudia Pinto Dabés Guimarães (1,2), Olivier Nouailletas (3), Céline Perlot (2,3,4) and David Grégoire (1,3,4,*)  - Affiliation:          (1) Universite de Pau et des Pays de l’Adour, E2S UPPA, CNRS, LFCR, Anglet, France,          (2) Universite de Pau et des Pays de l’Adour, E2S UPPA, SIAME, Anglet, France,          (3) Universite de Pau et des Pays de l’Adour, E2S UPPA, ISA BTP, Anglet, France,          (4) Institut Universitaire de France, Paris, France,            * Correspondence: david.gregoire@univ-pau.fr
DOI: 10.5281/zenodo.10612803
title: [Raw data collection] - Granular skeleton optimisation and influence of the cement paste content in bio-based oyster shell mortar with 100% aggregate replacement

description: Raw data collection

Associated paper information

- Year: 2024 - Journal: Sustainability - DOI/link: https://doi.org/10.3390/su16062297 - Title: Granular skeleton optimisation and influence of the cement paste content in bio-based oyster shell mortar with 100% aggregate replacement  - Authors: Ana Cláudia Pinto Dabés Guimarães (1,2), Olivier Nouailletas (3), Céline Perlot (2,3,4) and David Grégoire (1,3,4,*)  - Affiliation:          (1) Universite de Pau et des Pays de l’Adour, E2S UPPA, CNRS, LFCR, Anglet, France,          (2) Universite de Pau et des Pays de l’Adour, E2S UPPA, SIAME, Anglet, France,          (3) Universite de Pau et des Pays de l’Adour, E2S UPPA, ISA BTP, Anglet, France,          (4) Institut Universitaire de France, Paris, France,            * Correspondence: david.gregoire@univ-pau.fr
DOI: 10.25345/c59z90p67
title: MassIVE MSV000094287 - The hinge-engineered IgG1-IgG3 hybrid subclass IgGh47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 monoclonal antibodies
title: Antibodies are central to the immune response against microbes. We have previously generated an opsonic IgG1 monoclonal antibody, Ab25, targeting the M protein of Streptococcus pyogenes. Here, we engineered Ab25 into the IgG2-4 subclasses. Despite reduced binding, the IgG3 version demonstrated enhanced opsonic function. Molecular dynamics (MD) simulations showed that IgG3s Fc exhibits extensive mobility in 3D space relative to the antigen due to its extended hinge region. The MD simulations also showed altered Fab-antigen interactions, in line with IgG3s diminished affinity. We explored the impact of hinge-engineering by generating a panel of IgG antibodies, IgGhxx, containing the CH1-3 domains of IgG1 and different segments of IgG3s hinge. Hinge-engineering enhanced opsonic function, with the most potent hinge having 47 amino acids. IgGh47 exceeded the parent IgG1 and, in some instances, the IgG3 version. The IgGh47 was protective against Streptococcus pyogenes in a systemic infection mouse model, contrary to parent IgG3 and IgG1. The in vitro phenotype of IgGh47 was generalizable to clinical isolates with different emm types. Finally, we generated IgGh47 versions of anti-SARS-CoV-2 mAbs, which exhibited strongly enhanced in vitro opsonic function compared to the original IgG1s. The improved function of the IgGh47 subclass in two distant biological systems provides new insights into antibody function and how to enhance it for opsonic function.
DOI: 10.15151/esrf-es-1477911269
title: Structural studies of various proteins in Uppsala

description: The Block Allocation Group (BAG) includes projects for protein structure-based studies at Uppsala University (UU) and the Swedish University for Agricultural Sciences (SLU, Uppsala) under the canopy of Professor Stefan D Knight (UU). A broad range of scientific topics are covered, including but not limited to antibiotics resistance, drug development aiming at new antibiotics, photosynthesis, carbohydrate synthesis and degradation, enzymology, protein evolution, transcription, chromatin remodelling, metal homeostasis, amyloid, and molecular chaperones.
DOI: 10.15151/esrf-es-1542855369
title: Speckle based Dark field Imaging to map saxs signal

description: Speckle base imaging allows to quantify x-ray scattering by analyzing speckle defocus magnitude and direction. This analysis can be repeated at different x-ray propagation distances to retrieve the full saxs curve while keeping the macro-structure information from the regular imaging. We intend to scan small glass spheres and and some human tooth.
DOI: 10.15151/esrf-es-1446434903
title: Hierarchical Phase-contrast microtomographic imaging of old violins, dry run and real experiment to scan the "Cannone" Paganini's violin bef

description: The ESRF has been asked to help for the preparation of the restoration of the old violin called the "Cannone" that was played by Paganini in the late 18th century. This invaluable violin needs to be repaired, but due to the extent of degradations, and considering that it is still played regularly, a very detailed assessment of its present state is required. BM18 with its hierarchical propagation phase contrast microtomography capabilities with low dose setup is currently the best location in the world to conduct this study. Nevertheless, considering the importance of this violin, a dry run with another less valuable violin, as well as a modern copy of the Cannone is required to test all the protocols, including the control of the humidity and dosimetry. This proposal hence covers both the dry run on the two test violins and the real experiment. It is performed on directors contingency beamtime.
DOI: 10.15151/esrf-es-1474877057
title: Effect of High Pressure on Superstucture of a Spin crossover Compound

description: Our proposal aims to conduct high-pressure x-ray diffraction investigations on single crystals of the orthorhombic polymorph of Fe(PM-Bia)2(NCS)2 (PM-Bia=N-(2'- pyridylmethylene)-4-amino-bi-phenyl) utilizing our advanced diamond anvil cells (DACs) optimized both for synchrotron and neutron single-crystal diffraction and characterized by a wide opening angle of 110°. In this research endeavor, we seek to study the evolution of complex structural changes in the vicinity of the critical pressure point 2.02 GPa with a pressure resolution of 0.1-0.2 GPa. This pressure point is of special significance, as, from our previous investigations, we find that it corresponds to the formation of a superstructure in the compound. The use of our wide-angle DACs maximizes accessibility to reciprocal space, particularly beneficial for exploring low-symmetry structures.
DOI: 10.15151/esrf-es-1555168862
title: Tests and de-setup MA6069

description: Tests with in situ field cell and de-setup MA6069
DOI: 10.15151/esrf-es-1472041038
title: Study of rare earth elements behavior in confined solution

description: The goal of this proposal is to characterize the rare earth element behavior in single-digit nanoconfinement. For this, we will determine how rare earth elements in confined solutions interact with silica surfaces spaced of few nanometers and their transport mechanisms in nanochannels, as we have already done with XCln (n=1 and 2) solutions. To reach this goal, 2 and 3 nm nanochannels empty or already filled with water will be immersed in electrolyte solution of NdCl3, Nd(NO3)3, DyCl3 and Dy(NO3)3 at 1M at pH=6, placed in a special homemade experimental set-up and characterized during the first 48h and after 1, 3 and 6 months. Coupled to atomistic modelling, these results will give reliable information such as the electron density profiles and the ion distributions, enabling a better fundamental understanding of the ions and water transport in single-digit confinement.
DOI: 10.15151/esrf-es-1472035872
title: Intermediate redox states of Cu-Amyloid beta and Cu-alpha-synuclein complexes by variable temperature X-ray Absorption Spectroscopy

description: Several peptides and proteins related to neurodegenerative diseases such as amyloid-beta in Alzheimer’s or alpha-synuclein in Parkinson’s disease are intrinsically disordered proteins (IDP) and can bind Cu to form Cu-IDP complexes. These Cu-IDP are able to catalyse the production of reactive oxygen species (ROS) in the presence of a reducing agent (ascorbate) and dioxygen. This ROS production needs the redox cycling between the two redox states (Cu(I), Cu(II)) and is thought to contribute to the neurodegeneration.
In the proposed project we propose to perform variable temperature XAS measurements in which we photoreduce Cu and then perform XAS experiments at different cryogenic temperatures in order to capture and characterize the intermediate redox states of Cu-Amyloid β and Cu-alpha-synuclein.