cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29094599.v1
title: System design -IDEF0

description: The development of critical thinking (CT) in online learning environments has become a major focus in educational research, though most studies have centered on discrete technological tools for CT instruction, with limited exploration of integrated environments that combine pedagogy and technology. This study aims to design and validate a Personalized Learning Environments-based Critical Thinking (PLEs-CT) platform to support the development of CT in undergraduates. The platform was developed based on the Real-World Practice-based Critical Thinking (RWP-CT) and the Integration Definition for Function Modeling 0 (IDEF0) method. A quasi-experimental study was conducted at a comprehensive university in eastern China, involving 40 second-year English majors. Pre- and post-intervention surveys and interviews with 12 participants evaluated the effectiveness of the PLEs-CT. Statistical analysis revealed significant improvements in overall CT (p &lt; 0.01) with a large effect size. Further analysis confirmed significant improvements in analytical skills, openness to CT, and its application (p &lt; 0.01). Thematic analysis supported these findings, highlighting positive evaluations of interactive features and personalized recommendations. The study introduces an innovative framework and offers valuable practical insights for effectively promoting CT within digital learning environments.
DOI: 10.15468/dl.ecj4zp
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-156.77159 20.82933,-156.67966 20.82933,-156.67966 20.90081,-156.77159 20.90081,-156.77159 20.82933))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cetacea"
 ]
}

 The dataset's 5 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004641-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68tduv
title: Occurrence Download

description: A dataset containing 2803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus albicaulis Engelm.",
 "Year 1990-2025"
 ]
}

 The dataset includes 2803 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004648-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuqdhf
title: Occurrence Download

description: A dataset containing 2761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anser canagicus (Sevastianov, 1802)",
 "Year is less than or equal to 2024",
 "Year is greater than or equal to 2021",
 "Continent is North America"
 ]
}

 The dataset includes 2761 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013003-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksd3da
title: Occurrence Download

description: A dataset containing 1052712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Streptopelia decaocto (Frivaldszky, 1838)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 2019",
 "Month is greater than or equal to April",
 "Month is less than or equal to September",
 "EventDate is not null",
 "Country is United States of America",
 "Geometry POLYGON((-63 22, -63 51, -126 51, -126 22, -63 22))"
 ]
}

 The dataset includes 1052712 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012991-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwwe3h
title: Occurrence Download

description: A dataset containing 5262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.25_1",
 "TaxonKey is Ardea alba Linnaeus, 1758"
 ]
}

 The dataset includes 5262 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013004-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15272359
title: The Afterlife of Roman Roads in England: PAS medieval coins dataset and R code

description: R code and research dataset of medieval coins recorded by the Portable Antiquities Scheme in England and Wales (https://finds.org.uk/) used in the article: 

Oksanen, Eljas and Brookes, Stuart (2025). 'The afterlife of Roman roads in England: insights from the fifteenth-century Gough Map of Great Britain', Journal of Archaeological Science.https://doi.org/10.1016/j.jas.2025.106227

The coin finds data dump was obtained by the PAS website (https://finds.org.uk/) on 28.03.2025 under CC-BY licence and was filtered to contain only medieval coin findspots that have coordinate values. The R Code for analysis is included and was developed by Eljas Oksanen.
DOI: 10.5281/zenodo.14953757
title: The Afterlife of Roman Roads in England: PAS medieval coins dataset and R code

description: R code and research dataset of medieval coins recorded by the Portable Antiquities Scheme in England and Wales (https://finds.org.uk/) used in the article: 

Oksanen, Eljas and Brookes, Stuart (2025). 'The afterlife of Roman roads in England: insights from the fifteenth-century Gough Map of Great Britain', Journal of Archaeological Science.https://doi.org/10.1016/j.jas.2025.106227

The coin finds data dump was obtained by the PAS website (https://finds.org.uk/) on 28.03.2025 under CC-BY licence and was filtered to contain only medieval coin findspots that have coordinate values. The R Code for analysis is included and was developed by Eljas Oksanen.
DOI: 10.15468/dl.fh35n4
title: Occurrence Download

description: A dataset listing the 84 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.83394 36.14012,-5.83285 36.13926,-5.82507 36.13247,-5.82313 36.13418,-5.82266 36.13507,-5.82225 36.13562,-5.82487 36.13799,-5.82627 36.14109,-5.82337 36.1437,-5.82755 36.14744,-5.83394 36.14012))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 84 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038265-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvc6q5
title: Occurrence Download

description: A dataset containing 43512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa pigra"
 ]
}

 The dataset includes 43512 records from 536 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038274-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17623392
title: Alignment and sequence data for dimensionality of protein sequence space project

description: The included datasets:



Vertebrates dataset - ncbi_vertebrates_data.zip

- Amino acid alignments

- Nucleotide alignments for dN/dS calculation

- Raw amino acid sequences of sample 616 protein families used for pairwise alignments

(unlike other datasets can't be obtained by removing the gaps from alignments due to use of

MACSE for codon alignment)

- Species annotation file for sequence IDs


Enterobacterales dataset

- Amino acid alignments

- Nucleotide alignments for dN/dS calculation 

- Species annotation file for sequence IDs


Gammaproteobacteria dataset

- Nucleotide alignments for dN/dS calculation
DOI: 10.15468/dl.7wcfuw
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Hydrangea paniculata"
 ]
}

 The dataset includes 112 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038275-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r89gx7
title: Occurrence Download

description: A dataset containing 25642 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea cairica"
 ]
}

 The dataset includes 25642 records from 443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038276-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc7wwf
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Hydrangea paniculata"
 ]
}

 The dataset includes 112 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038277-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4f4mgz
title: Occurrence Download

description: A dataset containing 70772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus hipposideros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70772 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038243-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxnn9b
title: Occurrence Download

description: A dataset containing 97608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus ferrumequinum",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97608 records from 1564 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038244-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0406281
title: Data for: Projecting global mariculture production and adaptation pathways under climate change

description: The sustainability of global seafood supply to meet increasing demand is facing several challenges, including increasing consumption levels due to a growing human population, fisheries resources over-exploitation and climate change. While growth in seafood production from capture fisheries is limited, global mariculture production is expanding. However, climate change poses risks to the potential seafood production from mariculture. Here, we apply a global mariculture production model that accounts for changing ocean conditions, suitable marine area for farming, fishmeal and fish oil production, farmed species dietary demand, farmed fish price, and global seafood demand to project mariculture production under two climate and socioeconomic scenarios. We include 85 farmed marine fish and molluscs species, representing about 70% of all mariculture production in 2015. Results show positive global mariculture production changes by the mid and end of the 21st century relative to the 2000s under the SSP1-2.6 scenario with an increase of 33%±6 and 17%±5 respectively. However, under the SSP5-8.5 scenario, an increase of 8%±5 is projected, which peaks by the mid-century and declines by 16%±5 towards the end of the 21st century. More than 25% of mariculture-producing nations are projected to lose 40-90% of their current mariculture production potential under SSP5-8.5 by mid-century. Projected impacts are mainly due to the direct ocean warming effects on farmed species and suitable marine areas, and the indirect impacts of changing availability of forage fishes supplies to produce aquafeed. Fishmeal replacement with alternative protein can lower climate impacts on a subset of finfish production. However, such adaptation measures do not apply to regions dominated by non-feed-based farming (i.e., molluscs) and regions losing substantial marine areas suitable for mariculture. Our study highlights the importance of strong mitigation efforts and the need for different climate adaptation options tailored to the diversity of mariculture systems, to support climate-resilient mariculture development.
DOI: 10.14288/1.0406459
title: Flight training and dietary antioxidants have mixed effects on the oxidative status of multiple tissues in a female migratory songbird

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Birds, like other vertebrates, rely on a robust antioxidant system to protect themselves against oxidative imbalance caused by energy-intensive activities such as flying. Such oxidative challenges may be especially acute for females during spring migration, since they must pay the oxidative costs of flight while preparing for reproduction; however, little previous work has examined how the antioxidant system of female spring migrants responds to dietary antioxidants and the oxidative challenges of regular flying. We fed two diets to female European starlings, one supplemented with a dietary antioxidant and one without, and then flew them daily in a windtunnel for two weeks during the fall and spring migration periods. We measured the activity of enzymatic antioxidants (GPx, SOD, CAT), non-enzymatic antioxidant capacity (ORAC), and markers of oxidative damage (protein carbonyls and lipid hydroperoxides) in four tissues: pectoralis, leg, liver, and heart. Dietary antioxidants affected enzymatic antioxidant activity and lipid damage in the heart, and non-enzymatic antioxidant capacity in the pectoralis and protein damage in leg muscle. In general, birds fed less antioxidants appear to incur increased oxidative damage while upregulating non-enzymatic and enzymatic antioxidant activity, though these effects were strongly tissue-specific. We also found a significant diet x training interaction for enzymatic antioxidant activity in the leg, and strong trends for diet x training interactions for enzymatic antioxidant activity in the heart and liver. Flight-training may condition the antioxidant system of females to dynamically respond to oxidative challenges, and females during spring migration may shift antioxidant allocation to reduce oxidative damage.&lt;/p&gt;
DOI: 10.14288/1.0406463
title: Woodpeckers and other excavators maintain the diversity of cavity-nesting vertebrates

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Woodpeckers and other excavators create most of the holes used by secondary tree-cavity nesting vertebrates (SCNs) in North American temperate mixedwood forests, but the degree to which excavators release SCNs from nest-site limitation is debated. Our goal was to quantify how excavators maintain the diversity and abundance of secondary cavity nesters in a temperate forest through the creation of tree cavities. We examined the short- and long-term (legacy) effects of excavators (principally woodpeckers, but also red-breasted nuthatches and black-capped chickadees) on forest biodiversity using longitudinal monitoring data (1732 nest cavities, 25 sites, 16 years) in British Columbia, Canada. Sites with higher densities of excavator nests had more cavities available, higher species richness of SCNs, and higher nest density of SCNs, indicating the importance of a standing stock of cavities. Years with higher nesting densities of excavators were followed by years with higher SCN diversity, indicating that the creation of nesting opportunities through fresh excavation releases SCNs from community-wide nest-site limitation. We also show that excavators leave a “legacy” of biodiversity (species richness and abundance) at a site by accumulating cavities at rates faster than they become unusable by decay or destruction. By quantifying site-level effects of cavity excavation on the SCN community, our study highlights the key role of excavators as ecosystem engineers that maintain forest wildlife biodiversity. 01-Nov-2021&lt;/p&gt;
DOI: 10.15468/dl.axzuka
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Durio kutejensis (Hassk.) Becc.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000478-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0406460
title: Economies of scale shape energetics of solitary and group living spiders and their webs

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Metabolic scaling, whereby larger individuals use less energy per unit mass than smaller ones, may apply to the combined metabolic rate of group-living organisms as group size increases. Spiders that form groups in high disturbance environments can serve to test the hypothesis that economies of scale benefit social groups.&lt;/p&gt; &lt;p&gt;Using solitary and group-living spiders, we tested the hypothesis that spiders exhibit negative allometry between body or colony mass and the standing mass of their webs and whether, and how, such a relationship may contribute to group-living benefits in a cooperative spider.&lt;/p&gt; &lt;p&gt;Given the diverse architecture of spider webs—orb, tangle, and sheet-and-tangle, and associated differences in silk content, we first assessed how standing web mass scales with spider mass as a function of web architecture and whether investment in silk differs among web types. As group-living spiders are predominantly found in clades that build the presumably costlier sheet-and-tangle webs, we then asked whether cost-sharing through cooperative web maintenance contributes to a positive energy budget in a social species.&lt;/p&gt; &lt;p&gt;We found that larger spiders had a relatively smaller investment in silk per unit mass than smaller ones, but more complex sheet-and-tangle webs contained orders of magnitude more silk than simpler orb or tangle ones. In the group-living species, standing web mass per unit spider mass continued to decline as colony size increased with a similar slope as for unitary spiders. When web maintenance activities were considered, colonies also experienced reduced mass-specific energy expenditure with increasing colony size. Activity savings contributed to a net positive energy balance for medium and large colonies after inputs from the cooperative capture of large prey were accounted for.&lt;/p&gt; &lt;p&gt;Economies of scale have been previously demonstrated in animal societies characterized by reproductive and worker castes, but not in relatively egalitarian societies as those of social spiders. Our findings illustrate the universality of scaling laws and how economies of scale may contribute to setting limits on social behaviour and hunting strategies.&lt;/p&gt;
DOI: 10.14288/1.0406461
title: Adaptive divergence and the evolution of hybrid trait mismatch in threespine stickleback

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Selection against mismatched traits in hybrids is the phenotypic analogue of intrinsic hybrid incompatibilities. Mismatch occurs when hybrids resemble one parent population for some phenotypic traits and the other parent population for other traits, and is caused by dominance in opposing directions or from segregation of alleles in recombinant hybrids. In this study, we used threespine stickleback fish (&lt;i&gt;Gasterosteus aculeatus&lt;/i&gt; L.) to test the theoretical prediction that trait mismatch in hybrids should increase with the magnitude of phenotypic divergence between parent populations. We measured morphological traits in parents and hybrids in crosses between a marine population representing the ancestral form and twelve freshwater populations that have diverged from this ancestral state to varying degrees according to their environments. We found that trait mismatch was greater in more divergent crosses for both F&lt;sub&gt;1&lt;/sub&gt; and F&lt;sub&gt;2&lt;/sub&gt; hybrids. In the F&lt;sub&gt;1&lt;/sub&gt; the divergence--mismatch relationship was caused by traits having dominance in different directions, whereas it was caused by increasing segregating phenotypic variation in the F&lt;sub&gt;2&lt;/sub&gt;. Our results imply that extrinsic hybrid incompatibilities accumulate as phenotypic divergence proceeds.&lt;/p&gt;
DOI: 10.14288/1.0403802
title: Data for: Contrasting responses of soybean aphids, primary parasitoids, and hyperparasitoids to forest fragments and agricultural landscape structure

description: Data on soybean aphid abundances, primary parasitoid and hyperparasitoid rates, and hyperparasitoid richness from 21 soybean fields in 2011 from the Monteregie Region of Quebec.
DOI: 10.14288/1.0417458
title: Isoflurane stress induces region-specific glucocorticoid levels in neonatal mouse brain

description: These data are from post natal day 1, 5, 9, and 13 C57bl6/J mice. Mice were treated with a stressor (isoflurane) for 3 min followed by 27min oxygen, vehicle control (oxygen), or neither (baseline). Data were collected via liquid chromatography tandem mass spectrometry.
DOI: 10.14288/1.0406470
title: Rapid evolution of life history traits in response to warming, predation and competition: a meta-analysis

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Although studies quantifying evolutionary change in response to the selective pressures that organisms face in the wild have demonstrated that organisms &lt;i&gt;can&lt;/i&gt; evolve rapidly, we lack a systematic assessment of the frequency, magnitude and direction of rapid evolutionary change across taxa. To address this gap, we conducted a meta-analysis of 58 studies that document the effects of warming, predation or competition on the evolution of body size, development rate or fecundity in natural or experimental animal populations. We tested whether there was a consistent effect of any selective agent on any trait, whether the direction of these effects align with theoretical predictions, and whether the three agents select in opposing directions on any trait. Overall, we found weak effects of all three selective agents on trait evolution: none of our nine trait by selective agent combinations had an overall effect that differed from zero, only 31% of studies had a significant within-study effect, and attributes of the included studies generally did not account for between-study variation in results. One notable exception was that predation targeting adults consistently resulted in the evolutoin of smaller prey body size. We discuss potential causes of these generally weak responses and consider how our results inform the ongoing development of eco-evolutionary research.&lt;/p&gt;