cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48510/fk2/kaeyfm
title: Presence of human herpesvirus 6 and cytokines in fibromyalgia patients

description: Purpose: detection of human herpes virus 6 A and B genomic sequences, viral load, virus specific IgG class antibodies and cytokine levels in fibromyalgia patients and healthy controls. Data include information about 17 fibromyalgia patients age, gender, body mass index, fatigue severity, widespread pain index, the symptom severity, daily usage of medications, viral load and presence of human herpesvirus 6 A and B genomic sequences in DNA extracted from peripheral blood mononuclear cells (PBMC) and buccal samples, presence of human herpesvirus 6 specific IgG class antibodies in plasma samples as well as levels of 9 different cytokines in plasma. Presence and viral load of human herpesvirus 6 A and B in DNA samples was determined using nested PCR and real time PCR (RealStar HHV-6 PCR kit 1.0, Altona Diagnostics, Germany), respectively. Presence of human herpesvirus 6 specific IgG class antibodies was measured using semi-quantitative ELISA-VIDITEST anti-HHV-6 IgG (VIDIA, Czech Republic). MILLIPLEX® Human Cytokine/Chemokine Magnetic Bead Panel - Immunology Multiplex Assay (Millipore, Sigma Aldrich, Germany) and Luminex200 instrument were used to detect cytokine (IFN-γ, IL-1β, IL-2, IL-6, IL-8/CXCL8/CXCL8, IL-9, IL-17A/CTLA8, IL-18, TNF-α) levels in plasma samples. Data also include information about 24 healthy controls age, gender, body mass index, viral load and presence of human herpesvirus 6 A and B genomic sequences in DNA samples extracted from PBMC, presence of human herpesvirus 6 specific IgG class antibodies and levels of 9 different cytokines in plasma. Data also contains European Nucleotide Archive access information for fibromyalgia patients and controls.
DOI: 10.15468/dl.7v6fg3
title: Occurrence Download

description: A dataset containing 1739 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BatMapPH: Philippine Bat Species Occurrence Database"
 ]
}

 The dataset includes 1739 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003961-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxf2g2
title: Occurrence Download

description: A dataset containing 14824 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium of Kitakyushu Museum of Natural History and Human History"
 ]
}

 The dataset includes 14824 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003962-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13906980
title: Road distances and trip duration matrix for USA counties

description: This dataset presents a matrix with road distance and travel duration estimates for all trip combinations among USA counties. More details about the methodology are available here.

This version was generated considering the road network at the OSRM project in October 2024.

Variable dictionary



orig: County FIPS code of origin

dest: County FIPS code of destiny

dist: Road distance of the shortest route, in meters

dur: Travel time estimation, in minutes.


Files



dist_usa.rds : R serialized object

dist_usa.parquet : Parquet format

dist_usa.csv : CSV file. Colon (, ) field delimiter and point ( . ) as decimal separator

uscounties.csv :  CSV file with counties names, codes, and other information, from the Simple Maps database.
DOI: 10.5281/zenodo.13906981
title: Road distances and trip duration matrix for USA counties

description: This dataset presents a matrix with road distance and travel duration estimates for all trip combinations among USA counties. More details about the methodology are available here.

This version was generated considering the road network at the OSRM project in October 2024.

Variable dictionary



orig: County FIPS code of origin

dest: County FIPS code of destiny

dist: Road distance of the shortest route, in meters

dur: Travel time estimation, in minutes.


Files



dist_usa.rds : R serialized object

dist_usa.parquet : Parquet format

dist_usa.csv : CSV file. Colon (, ) field delimiter and point ( . ) as decimal separator

uscounties.csv :  CSV file with counties names, codes, and other information, from the Simple Maps database.
DOI: 10.6084/m9.figshare.27193623
title: Microbiome data for “Arctic greening drives changes in the diet and gut microbiome of a resident herbivore with consequences for body mass”.

description: The folder “Microbiome data” contains the microbiome data files comprising the fasta file, the ASVs table as well as the Silva taxonomy.
DOI: 10.6084/m9.figshare.27193623.v1
title: Microbiome data for “Arctic greening drives changes in the diet and gut microbiome of a resident herbivore with consequences for body mass”.

description: The folder “Microbiome data” contains the microbiome data files comprising the fasta file, the ASVs table as well as the Silva taxonomy.
DOI: 10.15468/dl.a2rv3y
title: Occurrence Download

description: A dataset containing 4056 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orobanche crenata Forssk."
 ]
}

 The dataset includes 4056 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003963-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27193614
title: Diet data for “Arctic greening drives changes in the diet and gut microbiome of a resident herbivore with consequences for body mass”.

description: The folder “Diet data” contains the (1) sequence data file after bioinformatic processing, including merging of paired-end reads, primers and tags removal, clustering, the filtering of short and rare sequences, and taxonomic assignations using the OBITools3 programme (Boyer et al. 2016), the (2) micro-histology diet data from 2009 for the subset of rumen samples analysed here, and the (3) plant DNA metabarcoding diet data after further data curation including the removal of failed PCRs, artifactual sequences and contaminations as well as transformation of sequence reads counts into relative abundances. This datafile also contains all the necessary metadata (tab 1), additional details about the plant MOTUs retrieved from the reindeer rumen (tab 2). Tab 3 corresponds to the actual diet dataset.
DOI: 10.6084/m9.figshare.27193614.v1
title: Diet data for “Arctic greening drives changes in the diet and gut microbiome of a resident herbivore with consequences for body mass”.

description: The folder “Diet data” contains the (1) sequence data file after bioinformatic processing, including merging of paired-end reads, primers and tags removal, clustering, the filtering of short and rare sequences, and taxonomic assignations using the OBITools3 programme (Boyer et al. 2016), the (2) micro-histology diet data from 2009 for the subset of rumen samples analysed here, and the (3) plant DNA metabarcoding diet data after further data curation including the removal of failed PCRs, artifactual sequences and contaminations as well as transformation of sequence reads counts into relative abundances. This datafile also contains all the necessary metadata (tab 1), additional details about the plant MOTUs retrieved from the reindeer rumen (tab 2). Tab 3 corresponds to the actual diet dataset.
DOI: 10.15468/dl.jn4x73
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylodes phyllodes Heyer & Cocroft, 1986"
 ]
}

 The dataset includes 518 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003964-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26303875
title: data.zip

description: <b>Habitat stability modulates temporal β-diversity patterns of seagrass-associated fauna across biogeographical scales</b>
DOI: 10.5281/zenodo.13906978
title: Dataset:  BEYOND public consultation survey

description: This is the data file and questionairre for BEYOND public consultation survey.
DOI: 10.5281/zenodo.13906979
title: Dataset:  BEYOND public consultation survey

description: This is the data file and questionairre for BEYOND public consultation survey.
DOI: 10.15468/dl.uduwgw
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orobanche cernua Loefl.",
 "Year 1500-2024"
 ]
}

 The dataset includes 1037 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003965-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wjrhc
title: Occurrence Download

description: A dataset containing 31170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orobanche minor Sm.",
 "Year 1798-2024"
 ]
}

 The dataset includes 31170 records from 700 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4dyau
title: Occurrence Download

description: A dataset containing 425936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amazona auropalliata (Lesson, 1842), Psittacara wagleri (G.R.Gray, 1845), Pyrrhura melanura (Spix, 1824), Pyrrhura rhodocephala (P.L.Sclater & Salvin, 1871), Pyrrhura rupicola (Tschudi, 1844), Alipiopsitta xanthops (Spix, 1824), Eupsittula aurea (J.F.Gmelin, 1788), Cacatua ducorpsii Pucheran, 1853, Cacatura ducorpsi Jacquinot & Pucheran, 1853, Purpureicephalus spurius (Kuhl, 1820), Pyrrhura picta (Statius Muller, 1776), Trichoglossus euteles (Temminck, 1835), Poicephalus rueppellii (G.R.Gray, 1849), Pyrrhura egregia (P.L.Sclater, 1881), Agapornis nigrigenis W.L.Sclater, 1906, Agapornis nigrigensis W.L.Sclater, 1906, Alisterus amboinensis (Linnaeus, 1766), Alisterus chloropterus (E.P.Ramsay, 1879), Aprosmictus jonquillaceus (Vieillot, 1818), Cacatua sanguinea Gould, 1843, Cacatura sanguinea Gould, 1843, Cyclopsitta diophthalma (Hombron & Jacquinot, 1841), Estrilda melpoda (Vieillot, 1817), Geronticus eremita (Linnaeus, 1758), Lophura swinhoii (Gould, 1863), Lophura swinhoei (Gould, 1863), Phoeniconaias minor (É.Geoffroy Saint-Hilaire, 1798), Platycercus venustus (Kuhl, 1820), Platycerus venustus (Kuhl, 1820), Primolius maracana (Vieillot, 1816), Syrmaticus mikado (Ogilvie-Grant, 1906), Pionus fuscus (Statius Muller, 1776), Philonus fuscus Dallas, 1852, Prionus fuscus (Statius Muller, 1776), Ptinus fuscus Gmelin, 1790, Ptinus fuscus Sturm, 1837, Triclaria malachitacea (Spix, 1824), Triclara malachitacea (Spix, 1824), Psittacara holochlorus (P.L.Sclater, 1859), Zanda funerea (Shaw, 1794))",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 425936 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024919-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkbwap
title: Occurrence Download

description: A dataset containing 28232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanerpes formicivorus (Swainson, 1827)"
 ]
}

 The dataset includes 28232 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058651-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qspntz
title: Occurrence Download

description: A dataset containing 1239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-141.50840 -33.31981,17.50840 -33.31981,17.50840 30.31981,-141.50840 30.31981,-141.50840 -33.31981))",
 "HasCoordinate is true",
 "TaxonKey is Bradypus variegatus Schinz, 1825",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1239 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003826-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pawms5
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippeastrum goianum (Ravenna) Meerow"
 ]
}

 The dataset includes 54 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006827-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rs7ls
title: Occurrence Download

description: A dataset containing 771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Marmosa mexicana Merriam, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 771 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047557-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jdxxz
title: Occurrence Download

description: A dataset containing 28630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Myadestes occidentalis Stejneger, 1882"
 ]
}

 The dataset includes 28630 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058665-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvnu8w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Automeris metzli Sallé, 1853",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393944-210914110416597/datasets/export for details.
DOI: 10.15468/dl.d3qzj4
title: Occurrence Download

description: A dataset containing 1948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Muscidae"
 ]
}

 The dataset includes 1948 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010814-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dftnr1
title: Occurrence Download

description: A dataset containing 13717727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 },
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 13717727 records from 1280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047549-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive7425.20240510.9
title: Microbacterium natoriense Liu et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7426.20240916.9.1
title: Microbacterium xylanilyticum Kim et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7427.20240510.9
title: Microbacterium paludicola Park et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.naa2gh
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Desulfurococcus amylolyticus Bonch-Osmolovskaya et al., 2001"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059370-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive7428.20240510.9
title: Microbacterium koreense Lee et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7429.20240916.9.1
title: Microbacterium ginsengisoli Park et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7430.20240510.9
title: Microbacterium pumilum Kageyama et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7431.20240916.9.1
title: Microbacterium aoyamense Kageyama et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7432.20240916.9.1
title: Microbacterium hatanonis Bakir et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7433.20240916.9.1
title: Microbacterium luticocti Vaz-Moreira et al. 2008 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7434.20240916.9.1
title: Microbacterium indicum Shivaji et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7435.20240510.9
title: Microbacterium sediminicola Kageyama et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7436.20240916.9.1
title: Microbacterium marinilacus Kageyama et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.dxhds8
title: Occurrence Download

description: A dataset containing 6663 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centrolabrus exoletus (Linnaeus, 1758)"
 ]
}

 The dataset includes 6663 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059371-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive7437.20240510.9
title: Microbacterium lacus Kageyama et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7438.20240916.9.1
title: Microbacterium flavum Kageyama et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7439.20240916.9.1
title: Microbacterium aquimaris Kim et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7440.20240510.9
title: Microbacterium awajiense Kageyama et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.br3vpx
title: Occurrence Download

description: A dataset containing 125716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Mosquito Occurrence Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 125716 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059348-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive7441.20240510.9
title: Microbacterium fluvii Kageyama et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.jttp7q
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Retrophyllum comptonii (J.T.Buchholz) C.N.Page"
 ]
}

 The dataset includes 423 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059373-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive7442.20240510.9
title: Microbacterium kribbense Dastager et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7443.20240916.9.1
title: Microbacterium pygmaeum Kageyama et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7444.20240916.9.1
title: Microbacterium profundi Wu et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7445.20240510.9
title: Microbacterium binotii Clermont et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7446.20240916.9.1
title: Microbacterium invictum Vaz-Moreira et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7447.20240916.9.1
title: Microbacterium insulae Yoon et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.