cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1145606
title: Evolutionary legacy response observed in algae and bryophytes following hydrogen sulfide administration

description: The study presented here examined the effects of administering hydrogen sulfide (H<sub>2</sub>S) to several ancient extant plant species to determine the organisms’ response to stress. Even though sulfur is an essential macronutrient required for growth and productivity, there are toxic compounds of this element that exert detrimental effects and produce physiological stress. It is speculated that the accumulation of H<sub>2</sub>S, a lethal gas, may have been a major contributing factor in past mass extinction events, where the environment was fairly anoxic with fluctuating temperatures. The potential of this toxic compound to exist as an environmental stressor suggests that certain organisms may have adapted to survive these periods of mass extinctions. It is hypothesized that due to the abundant presence of H<sub>2</sub>S in the past, ancient land plants may have an adaptive advantage that allowed them to survive and thrive. In this study, species of bryophytes and algae were exposed to specific concentrations of aqueous H<sub>2</sub>S over a seven-day period and measured their photosynthetic capacity at timed intervals using a FluorCam. Studying the effects of this toxic gas on ancient plants is imperative to our understanding of sulfur's varying biological roles, and provides insight on the evolutionary phenotypic variations amongst plants and stress responses in order to survive mass extinctions. Results indicate that <i>Hypnum</i>, <i>Chlamydomonas</i>, and <i>Charophyta</i> are all able to tolerate significant quantities of H<sub>2</sub>S and show resilience through increased photosynthetic capacity over a period of exposure, indicating a genetic and phenotypic legacy response.
DOI: 10.6084/m9.figshare.1145689.v3
title: Lower Toarcian (Jurassic) ammonites of the South Riffian ridges (Morocco): systematics and biostratigraphy

description: A rich ammonite fauna from the Lower Toarcian (Lower Jurassic) of the South Riffian ridges (northern Morocco), collected bed-by-bed from 14 new outcrops, is described. The fauna is nearly exclusively composed of already-known taxa, allowing correlation from the chronozone down to the zonule level. Fourteen species are described, among them the new species <i>Dactylioceras</i> (<i>Dactylioceras</i>) <i>laticostatum</i> sp. nov. The stratigraphical interval studied spans the first chronozone of the Toarcian, the Polymorphum Chronozone, but it remains unclear whether the Toarcian Oceanic Anoxic Event is represented in the studied succession. The Early Toarcian is mainly characterized by representatives of the family Dactylioceratidae, which are abundant but commonly crushed or deformed. Two new descriptors are proposed to describe the shell shape of crushed or incomplete specimens and have been used together with the classical ones for the taxonomic treatment of this group. A hypothesis about dimorphism in <i>Dactylioceras</i> (<i>Orthodactylites</i>) <i>semicelatum</i> (Simpson, 1843) and <i>Dactylioceras</i> (<i>Dactylioceras</i>) <i>laticostatum</i> sp. nov. is proposed.http://zoobank.org/urn:lsid:zoobank.org:pub:E7934E4A-942C-4C73-9831-22A8C0B0B89A
DOI: 10.6084/m9.figshare.1145689.v2
title: Lower Toarcian (Jurassic) ammonites of the South Riffian ridges (Morocco): systematics and biostratigraphy

description: A rich ammonite fauna from the Lower Toarcian (Lower Jurassic) of the South Riffian ridges (northern Morocco), collected bed-by-bed from 14 new outcrops, is described. The fauna is nearly exclusively composed of already-known taxa, allowing correlation from the chronozone down to the zonule level. Fourteen species are described, among them the new species <i>Dactylioceras</i> (<i>Dactylioceras</i>) <i>laticostatum</i> sp. nov. The stratigraphical interval studied spans the first chronozone of the Toarcian, the Polymorphum Chronozone, but it remains unclear whether the Toarcian Oceanic Anoxic Event is represented in the studied succession. The Early Toarcian is mainly characterized by representatives of the family Dactylioceratidae, which are abundant but commonly crushed or deformed. Two new descriptors are proposed to describe the shell shape of crushed or incomplete specimens and have been used together with the classical ones for the taxonomic treatment of this group. A hypothesis about dimorphism in <i>Dactylioceras</i> (<i>Orthodactylites</i>) <i>semicelatum</i> (Simpson, 1843) and <i>Dactylioceras</i> (<i>Dactylioceras</i>) <i>laticostatum</i> sp. nov. is proposed.http://zoobank.org/urn:lsid:zoobank.org:pub:E7934E4A-942C-4C73-9831-22A8C0B0B89A
DOI: 10.6084/m9.figshare.1145606.v2
title: Evolutionary legacy response observed in algae and bryophytes following hydrogen sulfide administration

description: The study presented here examined the effects of administering hydrogen sulfide (H<sub>2</sub>S) to several ancient extant plant species to determine the organisms’ response to stress. Even though sulfur is an essential macronutrient required for growth and productivity, there are toxic compounds of this element that exert detrimental effects and produce physiological stress. It is speculated that the accumulation of H<sub>2</sub>S, a lethal gas, may have been a major contributing factor in past mass extinction events, where the environment was fairly anoxic with fluctuating temperatures. The potential of this toxic compound to exist as an environmental stressor suggests that certain organisms may have adapted to survive these periods of mass extinctions. It is hypothesized that due to the abundant presence of H<sub>2</sub>S in the past, ancient land plants may have an adaptive advantage that allowed them to survive and thrive. In this study, species of bryophytes and algae were exposed to specific concentrations of aqueous H<sub>2</sub>S over a seven-day period and measured their photosynthetic capacity at timed intervals using a FluorCam. Studying the effects of this toxic gas on ancient plants is imperative to our understanding of sulfur's varying biological roles, and provides insight on the evolutionary phenotypic variations amongst plants and stress responses in order to survive mass extinctions. Results indicate that <i>Hypnum</i>, <i>Chlamydomonas</i>, and <i>Charophyta</i> are all able to tolerate significant quantities of H<sub>2</sub>S and show resilience through increased photosynthetic capacity over a period of exposure, indicating a genetic and phenotypic legacy response.
DOI: 10.6084/m9.figshare.1145510
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1145511
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1145511.v1
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1145606.v1
title: Evolutionary legacy response observed in algae and bryophytes following hydrogen sulfide administration

description: The study presented here examined the effects of administering hydrogen sulfide (H<sub>2</sub>S) to several ancient extant plant species to determine the organisms’ response to stress. Even though sulfur is an essential macronutrient required for growth and productivity, there are toxic compounds of this element that exert detrimental effects and produce physiological stress. It is speculated that the accumulation of H<sub>2</sub>S, a lethal gas, may have been a major contributing factor in past mass extinction events, where the environment was fairly anoxic with fluctuating temperatures. The potential of this toxic compound to exist as an environmental stressor suggests that certain organisms may have adapted to survive these periods of mass extinctions. It is hypothesized that due to the abundant presence of H<sub>2</sub>S in the past, ancient land plants may have an adaptive advantage that allowed them to survive and thrive. In this study, species of bryophytes and algae were exposed to specific concentrations of aqueous H<sub>2</sub>S over a seven-day period and measured their photosynthetic capacity at timed intervals using a FluorCam. Studying the effects of this toxic gas on ancient plants is imperative to our understanding of sulfur's varying biological roles, and provides insight on the evolutionary phenotypic variations amongst plants and stress responses in order to survive mass extinctions. Results indicate that <i>Hypnum</i>, <i>Chlamydomonas</i>, and <i>Charophyta</i> are all able to tolerate significant quantities of H<sub>2</sub>S and show resilience through increased photosynthetic capacity over a period of exposure, indicating a genetic and phenotypic legacy response.
DOI: 10.6084/m9.figshare.1145498
title: Unpublished

description: Unpublished
DOI: 10.6084/m9.figshare.1145510.v1
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1145509
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1144556
title: Accelerating the integration of NEON data in isotope ecology research

description: This is a presentation given as an invited talk at the 2014 Ecological Society of America meeting in Sacramento, CA
DOI: 10.6084/m9.figshare.1145509.v1
title: Gaussian Job Archive for C6H12NO(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1144504
title: Caliper LabChip GX II Chip Holder

description: .STL file for 3D printing Custom labware design: SBS-format plate allows microfluidic chip for Caliper LabChip electrophoresis to be prepared using liquid handling automation system. Designed for compatibility with Costar microcentrifuge tube (cat no. 3206, 0.65mL prelubricated) for submersion of the chip's capillary "sipper". Designed by Julie Behr, CBM graduate student, during rotation in Chodera lab, MSKCC.
DOI: 10.6084/m9.figshare.1144505
title: Universal Portrait/Landscape Tecan EVO One-Place MTP Carrier

description: .STL file for 3D Printing Custom labware design: Single position plate carrier with slots for pins corresponding to Tecan Freedom EVO deck, designed such that the center of the plate is at the same position in space with respect to the deck whether the carrier is positioned in a portrait or landscape orientation. The robotic manipulator arm (RoMa) can therefore access plates on this carrier in either orientation after being trained once. Designed collaboratively by John Chodera, MSKCC; Nikki Aldeborgh, research technician in the Kayvan Keshari lab, MSKCC; Sonya Hanson, postdoctoral research fellow in Chodera Lab, MSKCC; and Julie Behr, CBM graduate student, during rotation in Chodera lab, MSKCC.
DOI: 10.6084/m9.figshare.1144538
title: Morocco Natural Resources Management and Community Development

description: This document is a summary report of the U.S. Peace Corps Morocco’s “Natural Resources Management and Community Development” project concerning the Commune of Imin’tlit in the Province of Essaouira. Imin’tlit is situated within the Arganerae Biosphere Reserve in the valley to the north of Mount Amsittene. This report summarizes the ecology, agriculture, and economics of the region as revealed through participatory analysis and other sources. It also describes several possible development projects for the community. The Commune of Imin’tlit, while relatively small (population 5,119), has been selected as one focus of an international effort to conserve and manage sensitive areas in the Mediterranean Region. This project, Gestion et conservation des sites sensibles en matiere de biodiversity has a local focus, SMAP/Essaouira, which is headed by ENDA Maghreb. It is a joint effort of several non-governmental organizations (the WWF, The Chouala Association of Education and Culture – ACEC, and the local Imin’tlit Association for the Development and Protection of the Environment) as well as Governmental bodies (Moroccan Department of Water and Forests, Ministry of Education, and Ministry of Agriculture) and has received funding from the European Union. In addition to other activities, this project has performed research resulting in the creation of three reports (in French): An environmental diagnostic of the Amsittene Forest, a socio-economic diagnostic of Imin’tlit, and a study of the rural tourism potential of the Province of Essaouira. The centerpiece of the socioeconomic diagnostic is a survey undertaken in 2000 that questioned 90 families (15% of total) in the Douars of Ait Hmad, Ait Skri, and Ait Slib. This survey is the source of most of the statistics (unless noted otherwise) in this report. These reports, in combination with the application of Participatory Analysis for Community Action (PACA) tools for the past two years, have formed the basis of this report.
DOI: 10.6084/m9.figshare.1144556.v1
title: Accelerating the integration of NEON data in isotope ecology research

description: This is a presentation given as an invited talk at the 2014 Ecological Society of America meeting in Sacramento, CA
DOI: 10.6084/m9.figshare.1144504.v1
title: Caliper LabChip GX II Chip Holder

description: .STL file for 3D printing Custom labware design: SBS-format plate allows microfluidic chip for Caliper LabChip electrophoresis to be prepared using liquid handling automation system. Designed for compatibility with Costar microcentrifuge tube (cat no. 3206, 0.65mL prelubricated) for submersion of the chip's capillary "sipper". Designed by Julie Behr, CBM graduate student, during rotation in Chodera lab, MSKCC.
DOI: 10.6084/m9.figshare.1144492
title: Supp. info: Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts

description: Suppl. data for Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts
DOI: 10.6084/m9.figshare.1144492.v1
title: Supp. info: Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts

description: Suppl. data for Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts
DOI: 10.6084/m9.figshare.1144472
title: Overdispersed Dataset for Step by Step Guide

description: Dataset for analysis in conjunction with the 'Step by Step Guide'
DOI: 10.6084/m9.figshare.1144538.v1
title: Natural Resources Management and Community Development United States Peace Corps

description: This document is a summary report of the U.S. Peace Corps Morocco’s “Natural Resources Management and Community Development” project concerning the Commune of Imin’tlit in the Province of Essaouira. Imin’tlit is situated within the Arganerae Biosphere Reserve in the valley to the north of Mount Amsittene. This report summarizes the ecology, agriculture, and economics of the region as revealed through participatory analysis and other sources. It also describes several possible development projects for the community. The Commune of Imin’tlit, while relatively small (population 5,119), has been selected as one focus of an international effort to conserve and manage sensitive areas in the Mediterranean Region. This project, Gestion et conservation des sites sensibles en matiere de biodiversity has a local focus, SMAP/Essaouira, which is headed by ENDA Maghreb. It is a joint effort of several non-governmental organizations (the WWF, The Chouala Association of Education and Culture – ACEC, and the local Imin’tlit Association for the Development and Protection of the Environment) as well as Governmental bodies (Moroccan Department of Water and Forests, Ministry of Education, and Ministry of Agriculture) and has received funding from the European Union. In addition to other activities, this project has performed research resulting in the creation of three reports (in French): An environmental diagnostic of the Amsittene Forest, a socio-economic diagnostic of Imin’tlit, and a study of the rural tourism potential of the Province of Essaouira1. The centerpiece of the socioeconomic diagnostic is a survey undertaken in 2000 that questioned 90 families (15% of total) in the Douars of Ait Hmad, Ait Skri, and Ait Slib. This survey is the source of most of the statistics (unless noted otherwise) in this report. These reports, in combination with the application of Participatory Analysis for Community Action (PACA) tools for the past two years, have formed the basis of this report.
DOI: 10.6084/m9.figshare.1145498.v1
title: The utility and optimisation of non-differential Global Positioning System based measurements from ultra-marathon running events

description: The data set provided contain the point-to-point GPS measures for all participants included in the analysis of the article.
DOI: 10.6084/m9.figshare.1144471
title: Overdispersion and Observation-Level Random Effect Simulation Data

description: Collection of Files for simulating overdispersed count data and analysing using mixed models and observation level random effects.
DOI: 10.6084/m9.figshare.1144538.v3
title: Morocco Natural Resources Management and Community Development

description: This document is a summary report of the U.S. Peace Corps Morocco’s “Natural Resources Management and Community Development” project concerning the Commune of Imin’tlit in the Province of Essaouira. Imin’tlit is situated within the Arganerae Biosphere Reserve in the valley to the north of Mount Amsittene. This report summarizes the ecology, agriculture, and economics of the region as revealed through participatory analysis and other sources. It also describes several possible development projects for the community. The Commune of Imin’tlit, while relatively small (population 5,119), has been selected as one focus of an international effort to conserve and manage sensitive areas in the Mediterranean Region. This project, Gestion et conservation des sites sensibles en matiere de biodiversity has a local focus, SMAP/Essaouira, which is headed by ENDA Maghreb. It is a joint effort of several non-governmental organizations (the WWF, The Chouala Association of Education and Culture – ACEC, and the local Imin’tlit Association for the Development and Protection of the Environment) as well as Governmental bodies (Moroccan Department of Water and Forests, Ministry of Education, and Ministry of Agriculture) and has received funding from the European Union. In addition to other activities, this project has performed research resulting in the creation of three reports (in French): An environmental diagnostic of the Amsittene Forest, a socio-economic diagnostic of Imin’tlit, and a study of the rural tourism potential of the Province of Essaouira. The centerpiece of the socioeconomic diagnostic is a survey undertaken in 2000 that questioned 90 families (15% of total) in the Douars of Ait Hmad, Ait Skri, and Ait Slib. This survey is the source of most of the statistics (unless noted otherwise) in this report. These reports, in combination with the application of Participatory Analysis for Community Action (PACA) tools for the past two years, have formed the basis of this report.
DOI: 10.6084/m9.figshare.1145498.v3
title: Unpublished

description: Unpublished
DOI: 10.6084/m9.figshare.1145498.v2
title: Unpublished

description: Unpublished
DOI: 10.6084/m9.figshare.1144471.v1
title: Overdispersion and Observation-Level Random Effect Simulation Data

description: Collection of Files for simulating overdispersed count data and analysing using mixed models and observation level random effects.
DOI: 10.6084/m9.figshare.1144538.v2
title: Natural Resources Management and Community Development United States Peace Corps

description: This document is a summary report of the U.S. Peace Corps Morocco’s “Natural Resources Management and Community Development” project concerning the Commune of Imin’tlit in the Province of Essaouira. Imin’tlit is situated within the Arganerae Biosphere Reserve in the valley to the north of Mount Amsittene. This report summarizes the ecology, agriculture, and economics of the region as revealed through participatory analysis and other sources. It also describes several possible development projects for the community. The Commune of Imin’tlit, while relatively small (population 5,119), has been selected as one focus of an international effort to conserve and manage sensitive areas in the Mediterranean Region. This project, Gestion et conservation des sites sensibles en matiere de biodiversity has a local focus, SMAP/Essaouira, which is headed by ENDA Maghreb. It is a joint effort of several non-governmental organizations (the WWF, The Chouala Association of Education and Culture – ACEC, and the local Imin’tlit Association for the Development and Protection of the Environment) as well as Governmental bodies (Moroccan Department of Water and Forests, Ministry of Education, and Ministry of Agriculture) and has received funding from the European Union. In addition to other activities, this project has performed research resulting in the creation of three reports (in French): An environmental diagnostic of the Amsittene Forest, a socio-economic diagnostic of Imin’tlit, and a study of the rural tourism potential of the Province of Essaouira1. The centerpiece of the socioeconomic diagnostic is a survey undertaken in 2000 that questioned 90 families (15% of total) in the Douars of Ait Hmad, Ait Skri, and Ait Slib. This survey is the source of most of the statistics (unless noted otherwise) in this report. These reports, in combination with the application of Participatory Analysis for Community Action (PACA) tools for the past two years, have formed the basis of this report.
DOI: 10.6084/m9.figshare.1144467
title: Neuronal responses to simulated synaptic inputs

description: Data from... Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations. V Ilin, IH Stevenson, and M Volgushev. (2014) PLoS ONE 9(10): e109928. doi:10.1371/journal.pone.0109928 and Identifying and Tracking Simulated Synaptic Inputs from Neuronal Firing: Insights from In Vitro Experiments. M Volgushev, V Ilin, and IH Stevenson. (2015) PLoS Computational Biology 11(3): e1004167. doi:10.1371/journal.pcbi.1004167
DOI: 10.6084/m9.figshare.1144465
title: Ecological data in museums survey results

description: Please refer to the "read_me.txt" file for metadata. We surveyed scientists working in fields related to ecology, animal behavior, taxonomy, and systematics to investigate how much ecological data taxonomists think should be recorded in the time of a specimen collection and with which frequency ecologists and animal behaviorists use information from museums. We invited 381 researchers representing a range of institutions (e.g., universities, museums, and research facilities), primarily from the United States and Uruguay, to complete a survey. Professors, curators, and post-doctoral associates comprised the majority of participants (62%), followed by graduate students (32%), and undergraduate students (5%). The table "S3_survey_questions.pdf" have the questions used in the on-line survey. The dataset "S3_survey_results.csv" have the results of the survey.
DOI: 10.6084/m9.figshare.1144471.v2
title: Overdispersion and Observation-Level Random Effect Simulation Data

description: Collection of Files for simulating overdispersed count data and analysing using mixed models and observation level random effects.