cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3636335_d3
title: Additional file 11: of Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

description: P-values of single and multiple QTLs and haplotype combinations associated with witches’ broom disease. The first tab contains the single QTL with their different parental haplotype combinations. The different columns contain the total number of trees with each haplotype and the results of the Chi-squared test for resistance and susceptibility. The last column contains the percentage of resistant trees with the particular haplotype combination. The second and third tab contain the same info but for combinations of two and three QTL, respectively. The combinations marked in grey belong to the top five of lowest P-values and indicate the highest associations between the QTL and WBD resistance/susceptibility. (XLS 81 kb)
DOI: 10.6084/m9.figshare.c.3636335_d4
title: Additional file 13: of Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

description: Genes identified in all of the QTL regions associated with witches’ broom disease resistance. The annotation of the genes was based on the Matina 1–6 v1.1. genome. The genes indicated in red are genes that are most likely involved in disease resistance. Genes indicated in yellow contain a SNP marker that had the highest association with the disease in each QTL. Genes indicated in orange were identified as differentially expressed by Teixeira et al. [77]. The homologues in Arabidopsis thaliana (if known) were used, together with the GO Slim terms to identify the cellular components, the molecular components and the biological functions of the genes within the QTL regions. (XLS 155 kb)
DOI: 10.6084/m9.figshare.c.3636341_d14
title: Additional file 14: of Phylogenetic relationships of the New World titi monkeys (Callicebus): first appraisal of taxonomy based on molecular evidence

description: Partitioning schemes and substitution models selected by PartitionFinder. The selected partitioning schemes were implemented in RAxML v. 8.1, MrBayes 3.2.3 or BEAST v 1.8.1. Numbers in parentheses refer to codon position for coding mitochondrial and nuclear sequences. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3636353_d1
title: MOESM1 of A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23

description: Additional file 1: Table S1. All_SNP_effects_SSR.csv. A list of all the SNP effects estimated from single-SNP regression analysis. Columns are, chromosome, solution, error, t-like, P value, Log10 (P value), SNP id, genetic position, q-value.
DOI: 10.6084/m9.figshare.c.3636353_d2
title: MOESM2 of A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23

description: Additional file 2: Table S2. All_SNP_effects_Bayesian.csv. Description: A list of all the SNP effects estimated from the Bayesian approach applied to GWAS data. Columns are chromosome, SNP id, genetic position, SNP effect, effect variance, model frequency, window frequency, genetic frequency, genetic variance, effect delta, standard deviation of effect delta, t-like, shrink effect, Bayes factor.
DOI: 10.15468/dl.8mrq7s
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Epicharis bicolor Smith, 1854, Centris flaviventris Friese, 1901, Epicharis burmeisteri Schrottky, 1902)"
 ]
}

 The dataset includes 113 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033853-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636356_d1
title: Additional file 4: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

description: Probability values of population assignments for samples K = 2. The population Q matrix derived from STRUCTURE clustering analysis show the inferred ancestry membership proportions of each individual, in each cluster. Each individual is represented by a single vertical line, partitioned into K colored segments that represents that individual’s estimated membership fraction in each of the K inferred clusters. The X axis corresponds to the pre-defined populations (TL, PNG, QLD, NT and NSW) and the Y axis represents the proportional estimates of the estimated membership in clusters which add up to one. (TXT 11 kb)
DOI: 10.6084/m9.figshare.c.3636356_d2
title: Additional file 2: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

description: C. brevitarsis primer optimization. A subset of 38 primers was used to amplify 10 individuals. Twelve of these primer pairs PCR amplified 100% of the individuals. The remainders amplified inconsistently and were not used further. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3636356_d3
title: Additional file 3: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

description: Summary of allelic variation in 11 microsatellite loci. Allelic variation among N = 141 [Timor-Leste (N = 24), Papua New Guinea (N = 24), Queensland (N = 8), Northern Territory (N = 40) and New South Wales (N = 45)] C. brevitarsis specimens sampled from regional populations. Nallele- Null allele, m - monomorphic locus, observed (Ho) and expected (He) heterozygosity, probability of deviation from Hardy-Weinberg Equilibrium (PHWE) and inbreeding co-efficient (FIS) as described. Significantly deviated FIS values (P
DOI: 10.6084/m9.figshare.c.3636356_d4
title: Additional file 1: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

description: A summary file of the total number of primers designed to the flanking regions of the microsatellite repeats. From the total primers isolated, 420 primers were either found to be similar to each other or blasted to sequences from other organisms in the database, while 106 primers were unique and did not blast to anything in the NCBI database. After blasting the 106 unique primers against the sequenced reads, 93 primer pairs were predicted to anneal to a single unique read while 13 primer pairs were predicted to anneal to more than one read or to more than one site on a single read. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3636368_d1
title: Additional file 3: Figure S2. of Carbon ion therapy (C12) for high-grade malignant salivary gland tumors (MSGTs) of the head and neck: do non-ACCs profit from dose escalation?

description: PFS according to site of origin (ODP 16 kb)
DOI: 10.6084/m9.figshare.c.3636368_d2
title: Additional file 1: Table S1. of Carbon ion therapy (C12) for high-grade malignant salivary gland tumors (MSGTs) of the head and neck: do non-ACCs profit from dose escalation?

description: Treatment-related acute and late toxicity (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3636368_d3
title: Additional file 4: Figure S3. of Carbon ion therapy (C12) for high-grade malignant salivary gland tumors (MSGTs) of the head and neck: do non-ACCs profit from dose escalation?

description: OS according to site of origin (ODP 16 kb)
DOI: 10.6084/m9.figshare.c.3636368_d4
title: Additional file 2: Figure S1. of Carbon ion therapy (C12) for high-grade malignant salivary gland tumors (MSGTs) of the head and neck: do non-ACCs profit from dose escalation?

description: PFS according to histologic subtype. AC: adenocarcinoma; ACI: acinic cell carcinoma; MEC: mucoepidermoid carcinoma. Note only the most frequent subtypes are shown to improve visibility (ODP 16 kb)
DOI: 10.6084/m9.figshare.c.3636368_d5
title: Additional file 5: Figure S4. of Carbon ion therapy (C12) for high-grade malignant salivary gland tumors (MSGTs) of the head and neck: do non-ACCs profit from dose escalation?

description: LC according to resection status (ODP 17 kb)
DOI: 10.6084/m9.figshare.c.3636377_d1
title: Additional file 2: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: R script that implements the haplotype-based GWAS to map epidermolysis bullosa. Description: R script that reads haplotypes, SNP-positions, eigenvectors and phenotypes to perform a haplotype-based association study. A small dataset to perform the association study between epidermolysis bullosa in 43 VWD animals and haplotypes on chromosome 22 is provided in the Additional files 3, 4, 5 and 6. The script was tested in an unix environment. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3636377_d2
title: Additional file 6: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Eigenvectors for the top 10 principal components. Description: Eigenvectors for two calves with EB, 14 parents of affected calves and 27 control animals of the VWD population. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3636377_d3
title: Additional file 5: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Positions of 1009 SNPs on bovine chromosome 22. Description: The SNPs are ordered according to their chromosomal position and correspond to the haplotype phases in Additional file 4. (TXT 32 kb)
DOI: 10.6084/m9.figshare.c.3636377_d4
title: Additional file 1: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Annotation of variants compatible with recessive inheritance. Description: The functional consequences of 702 sequence variants compatible with recessive inheritance of epidermolysis bullosa were obtained from Ensembl using the Variant Effect Predictor tool. (TXT 383 kb)
DOI: 10.6084/m9.figshare.c.3636377_d5
title: Additional file 4: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Haplotypes for 43 VWD animals. Description: Haplotype phases that were estimated using 1009 SNPs on bovine chromosome 22 for two calves with EB, 14 parents of affected calves and 27 control animals of the VWD population. (TXT 86 kb)
DOI: 10.6084/m9.figshare.c.3636377_d6
title: Additional file 3: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Phenotype data for 43 VWD animals. Description: Phenotypes for epidermolysis bullosa in two affected calves, 14 parents and 27 control animals were coded as 2, 1 and 0, respectively. (TXT 484 bytes)
DOI: 10.15468/dl.huf5dt
title: Occurrence Download

description: A dataset containing 7198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "Geometry POLYGON((30.10098 51.08172,30.42981 51.18943,30.46583 51.44542,30.07696 51.44317,29.86492 51.26706,30.10098 51.08172))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7198 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033854-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttj8ju
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON ((-92.97694 17.99056, -92.97111 17.99056, -92.97111 18.00306, -92.97694 18.00306, -92.97694 17.99056))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 168 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033855-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636494_d1
title: MOESM1 of Mechanism of imidazolium ionic liquids
            toxicity in Saccharomyces cerevisiae and rational
            engineering of a tolerant, xylose-fermenting strain

description: Additional file 1. Significantly responsive [EMIM]Cl deletion mutants.
DOI: 10.6084/m9.figshare.c.3636494_d2
title: MOESM2 of Mechanism of imidazolium ionic liquids
            toxicity in Saccharomyces cerevisiae and rational
            engineering of a tolerant, xylose-fermenting strain

description: Additional file 2. Significantly responsive protein abundance in [EMIM]Cl.
DOI: 10.6084/m9.figshare.c.3636500_d1
title: Additional file 2: of DNA replication stress: a source of APOBEC3B expression in breast cancer

description: Supplementary Table 1. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3636506_d2
title: Additional file 3 of Identifying model error in metabolic flux analysis â   a generalized least squares approach

description: SBML file. An SBML representation of the metabolic model. (XML 89 kb)
DOI: 10.6084/m9.figshare.c.3636512_d2
title: Additional file 4: of Study protocol: realist evaluation of effectiveness and sustainability of a community health workers programme in improving maternal and child health in Nigeria

description: Ethical approvals from the University of Nigeria. (ZIP 1568Â kb)
DOI: 10.6084/m9.figshare.c.3636518_d1
title: Additional file 1: of Brace Classification Study Group (BCSG): part one â   definitions and atlas

description: Round table: Braces conceptual and technical approach to scoliosis: JC de Mauroy and N Price. The spreadsheet reproduces the Classification of the 6 most used braces in Europe according to 16 biomechanical parameters. (XLSX 658 kb)
DOI: 10.6084/m9.figshare.c.3636554_d1
title: Additional file 2: Table S1. of Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells

description: Summary of polar primary metabolites identified in root cortical cells of mycorrhizal and non-mycorrhizal roots of M. truncatula. Polar metabolites were analysed by GC-EI/TOF-MS based on metabolic profiling of methoxyaminated and trimethylsilylated metabolites. Data are expressed as means of two technical replicates. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3636557_d1
title: Additional file 1: of Evaluation in alcohol use disorders â   insights from the nalmefene experience

description: References. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3636590_d12
title: Additional file 6: Table S2. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

description: Position of SNPs idnetified among different pathotypes of P. brassicae, using pathotype 3 as reference. (XLSX 7838Â kb)
DOI: 10.6084/m9.figshare.c.3636593_d1
title: Additional file 4: Table S13. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: Manual annotation of intergenic CAGE-clusters. Manual annotation of intergenic CAGE-clusters using the following public databases/datasets: RefSeq genes; FANTOM5 phase I permissive TSSs; Repetitive Elements database; CAGEseq expression derived enhancer dataset; frontal cortex H3K4me3 ChIP-Seq dataset. Overlap between datasets is provided. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3636593_d2
title: Additional file 3: Table S12. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: List of all identified CAGE-clusters. List of all identified CAGE-clusters reported with their chromosomal locations gene ID, gene and transcript type class according to GENCODE version 17, and expression characteristics. (XLSX 2347 kb)
DOI: 10.6084/m9.figshare.c.3636593_d3
title: Additional file 7: Table S16. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: All identified sentinel cis eQTLs. List of possible causal variant cis eQTL based on location and lowest p value including CAGE-cluster and SNPs chromosomal positions; gene ID; biotype class according to GENCODE; FDR values and RegulomeDB scores. (XLSX 419 kb)
DOI: 10.6084/m9.figshare.c.3636593_d4
title: Additional file 1: Table S1. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: All included samples with their characteristics. List of all the samples passing quality controls used in this study with sample details including gender, age, RNA integrity number, postmortem interval, number of mapped reads, included in exome sequencing, and brain bank origin. (XLSX 361 kb)
DOI: 10.6084/m9.figshare.c.3636593_d6
title: Additional file 5: Table S14. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: All identified cis eQTL variants. List of all cis eQTL variants identified in this study including chromosomal position, gene ID, transcript class according to GENCODE, FDR values and Matrix eQTL statistics, SNPs characteristics, and distant between variants and CAGE-clusters. (XLSX 18351 kb)
DOI: 10.6084/m9.figshare.c.3636593_d7
title: Additional file 6: Table S15. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: All identified trans eQTL variants. List of all trans eQTL identified in this study including details for CAGE-cluster and SNPs chromosomal positions, FDR values, and information about co-occurrence of trans and cis-eQTLs. (XLSX 1110 kb)
DOI: 10.6084/m9.figshare.c.3636593_d8
title: Additional file 8: Table S17. of Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

description: Overlap between GWAS database and identified eQTL variants. List of all the identified cis eQTL linked to GWAS variants. Provided in this table are: chromosomal locations of the CAGE-clusters and SNPs, FDR values, pubmed ID, and disease traits. (XLSX 207 kb)
DOI: 10.6084/m9.figshare.c.3636596_d1
title: MOESM1 of Endovascular external carotid artery occlusion for brain selective targeting: a cerebrovascular swine model

description: Additional file 1. Temperature Data following cold saline injection at baseline and post modification.
DOI: 10.6084/m9.figshare.c.3636602_d1
title: Additional file 2: of An empirical study of race times in recreational endurance runners

description: Master Data Predicting Races Times Final. (XLSX 377Â kb)
DOI: 10.6084/m9.figshare.c.3636650_d1
title: Additional file 4: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Enterobacteriaceae database files. (ZIP 132 kb)
DOI: 10.6084/m9.figshare.c.3636650_d2
title: Additional file 3: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Genus level abundances of Enterbacteriaceae. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3636650_d3
title: Additional file 2: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Preprocessing results of 16S rRNA sequences. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3636650_d4
title: Additional file 1: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Metadata for cilantro samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3636650_d5
title: Additional file 5: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: High abundance classes among T0 samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3636665_d1
title: Additional file 2: of Dispatch guideline adherence and response intervalâ  a study of emergency medical calls in Norway

description: Index-113calls work sheet, a data file supporting the conclusions of the article. (XLSX 64Â kb)
DOI: 10.15468/dl.zhfrfb
title: Occurrence Download

description: A dataset containing 3460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.82773 -33.50324,-70.80917 -33.48581,-70.82877 -33.47129,-70.84247 -33.49867,-70.82773 -33.50324))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 3460 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033858-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayvc6u
title: Occurrence Download

description: A dataset containing 3460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.82773 -33.50324,-70.80917 -33.48581,-70.82877 -33.47129,-70.84247 -33.49867,-70.82773 -33.50324))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 3460 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033859-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636716_d2
title: Additional file 1: Table S1. of Transcriptional analysis of phloem-associated cells of potato

description: Summary of RNA-seq output of LCM collected PAC samples. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3636716_d1
title: Additional file 3: Table S2. of Transcriptional analysis of phloem-associated cells of potato

description: Complete RNA-seq profile. (XLSX 3811 kb)
DOI: 10.6084/m9.figshare.c.3636716_d3
title: Additional file 20: Table S14. of Transcriptional analysis of phloem-associated cells of potato

description: Source of GO information for entire potato genome. (TXT 17703 kb)
DOI: 10.6084/m9.figshare.c.3636716_d5
title: Additional file 7: Table S6. of Transcriptional analysis of phloem-associated cells of potato

description: RNA profiles of select RNA-binding proteins. (XLSX 106 kb)
DOI: 10.6084/m9.figshare.c.3636716_d6
title: Additional file 4: Table S3. of Transcriptional analysis of phloem-associated cells of potato

description: Differentially expressed genes between petiole and stem phloem-associated cells. (XLSX 192 kb)
DOI: 10.6084/m9.figshare.c.3636716_d8
title: Additional file 5: Table S4. of Transcriptional analysis of phloem-associated cells of potato

description: Expression of genes in pet-PAC and stem-PAC with select GO terms. (XLSX 331 kb)
DOI: 10.6084/m9.figshare.c.3636716_d10
title: Additional file 13: Table S11. of Transcriptional analysis of phloem-associated cells of potato

description: Abundant transcripts significantly up-regulated under short days. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3636716_d9
title: Additional file 18: Table S12. of Transcriptional analysis of phloem-associated cells of potato

description: RNA-seq of RNA-binding proteins and select TFs. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3636716_d11
title: Additional file 19: Table S13. of Transcriptional analysis of phloem-associated cells of potato

description: Comparison to Arabidopsis phloem transcripts. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3636716_d13
title: Additional file 6: Table S5. of Transcriptional analysis of phloem-associated cells of potato

description: Expression level of RNA-binding proteins. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3636716_d12
title: Additional file 9: Table S8. of Transcriptional analysis of phloem-associated cells of potato

description: RNA-seq output of petiole samples under photoperiod treatments. (XLSX 45 kb)