cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh335596.07fu
title: SH335596.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1699818.08fu
title: SH1699818.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1699819.08fu
title: SH1699819.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh335597.07fu
title: SH335597.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh335598.07fu
title: SH335598.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh335599.07fu
title: SH335599.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1699820.08fu
title: SH1699820.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1699821.08fu
title: SH1699821.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1699822.08fu
title: SH1699822.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh335600.07fu
title: SH335600.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.16943691
title: Additional file 7 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 7: Excel S6. Up-regulation of the protein KEGG enrichment-related pathway.
DOI: 10.6084/m9.figshare.16943676
title: Additional file 2 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 2: Excel S1. Differentially expressed circRNAs in GSE100186, GSE108735 and GSE137836.
DOI: 10.6084/m9.figshare.16943608
title: Additional file 5 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 5.
DOI: 10.6084/m9.figshare.16943605.v1
title: Additional file 4 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 4.
DOI: 10.25828/0abm-d292
title: Recorded Live Births 1998-2022
DOI: 10.6084/m9.figshare.16943599
title: Additional file 2 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 2.
DOI: 10.6084/m9.figshare.16943599.v1
title: Additional file 2 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 2.
DOI: 10.6084/m9.figshare.16943602
title: Additional file 3 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 3.
DOI: 10.6084/m9.figshare.16943602.v1
title: Additional file 3 of Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes

description: Additional file 3.
DOI: 10.6084/m9.figshare.19311251.v1
title: Additional file 6 of Host-microbiome protein-protein interactions capture disease-relevant pathways

description: Additional file 6: Table S5. Human interactors that are known drug targets. For each disease-associated human protein, we list the drug interactor (annotated using DrugCentral and DrugBank) and the study in which it was found to be important.
DOI: 10.6084/m9.figshare.16943676.v1
title: Additional file 2 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 2: Excel S1. Differentially expressed circRNAs in GSE100186, GSE108735 and GSE137836.
DOI: 10.6084/m9.figshare.12218879.v1
title: Additional file 2 of Wheat chromatin architecture is organized in genome territories and transcription factories

description: Additional file 2:Table S1. with information about gene to gene loops (GGLs): position, size, strength, and presence or absence of H3K9ac, H3K27me3, H3K36me3 histone marks, presence or absence of RNA polymerase II, transcriptional status and expression level (TPM).
DOI: 10.6084/m9.figshare.16943679.v1
title: Additional file 3 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 3: Excel S2. circBank, miRanda, circAtlas and RNAhybrid databases predict the possible miRNAs bound by ciRS-7.
DOI: 10.6084/m9.figshare.16943688
title: Additional file 6 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 6: Excel S5. Down-regulation of the protein KEGG enrichment-related pathway.
DOI: 10.6084/m9.figshare.16943691.v1
title: Additional file 7 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 7: Excel S6. Up-regulation of the protein KEGG enrichment-related pathway.
DOI: 10.6084/m9.figshare.8030921
title: Altered peripheral lymphocyte subsets in untreated systemic lupus erythematosus patients with infections

description: The leading cause of death in systemic lupus erythematosus (SLE) patients is infection. The objective of this study was to evaluate the distribution of lymphocyte subsets in untreated SLE patients with infections. This was a cross-sectional study. Data from January 2017 to May 2018 were collected. Flow cytometry was used to measure the peripheral lymphocyte subsets including CD3+T cells, CD4+T cells, CD8+T cells, CD19+B cells, CD3-CD16+CD56NK cells, and CD3+CD16+CD56NKT cells in 25 healthy controls and 52 treatment-naive SLE patients, among whom 13 were complicated with infections. Association between the lymphocyte subsets and infections was further analyzed. SLE patients with infections (n=13) showed a significantly higher incidence rate of fever (84.6 vs 28.2%) and serositis (84.6 vs 23.1%), increased level of erythrocyte sedimentation rate (60.5±30.1 vs 37.4±27.1 mm/h), serum C-reactive protein (CRP) (102.7±94.9 vs 9.4±14.9 mg/L), procalcitonin (PCT) (1.07±0.08 vs 0.16±0.13 μg/L), and lower blood hemoglobin (Hb) (93.0±20.5 vs 110.4±16.0 g/L) level compared with non-infection patients (n=39) (all P&lt;0.05). In comparison with non-infectious SLE patients (387.9±261.6/μL), CD4+T cells count decreased significantly in infectious SLE patients (217.8±150.4/μL) (P&lt;0.05), and it was negatively correlated with infection-related indicators including PCT (r=−0.573, P=0.041) and CRP (r=−0.596, P=0.032) levels. Our findings suggested that abnormalities of peripheral lymphocyte subsets were related to the immune disorder of lupus itself, regardless of immunosuppressive treatment. Monitoring lymphocyte subsets, especially CD4+T cells, may be helpful for identifying the presence of infection in SLE patients.
DOI: 10.6084/m9.figshare.19311248.v1
title: Additional file 5 of Host-microbiome protein-protein interactions capture disease-relevant pathways

description: Additional file 5: Table S4. Number of human interactors according to the source of the experimentally-verified interactors. The number of human interactors, according to the species sourcing the initial experimentally verified interacting protein.
DOI: 10.6084/m9.figshare.16944051.v1
title: A flow-rate-controlled double-nozzles approach for electrochemical additive manufacturing

description: The electrochemical additive manufacturing technique based on the meniscus-confined approach has been proved to be a powerful tool for fabricating nanoscale and microscale metal components. The stability of the meniscus is the key in this meniscus-confined approach to achieve high resolution and reliable product quality. In the present study, a double-nozzles design, which consists of a feed nozzle and a suction nozzle, is proposed for the meniscus confined electrochemical additive manufacturing technique. It was demonstrated that the proposed design possessed robust control of the stability of the meniscus by manipulating the feed and suction rates of the two nozzles in a quite large range. Various sizes of menisci can be easily obtained by utilising nozzles with different sizes. Compared with the pressure-controlled single-nozzle approach, the results showed that dense structures without dendrites can be fabricated by the double-nozzles design with larger current density due to the feed-and-suction process at the tip of the nozzles. The proposed flow-rate-controlled double-nozzles design was finally employed to fabricate some copper circuits and a Cu/CuNi thin film thermocouple to demonstrate its potential in fabricating electronic devices.
DOI: 10.6084/m9.figshare.19311248
title: Additional file 5 of Host-microbiome protein-protein interactions capture disease-relevant pathways

description: Additional file 5: Table S4. Number of human interactors according to the source of the experimentally-verified interactors. The number of human interactors, according to the species sourcing the initial experimentally verified interacting protein.
DOI: 10.6084/m9.figshare.16943685
title: Additional file 5 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 5: Excel S4. Lab-free quantitative results.
DOI: 10.6084/m9.figshare.12219086
title: Additional file 1 of Milk exosome-derived miRNAs from water buffalo are implicated in immune response and metabolism process

description: Additional file 1. Exosomal miRNA expression between buffalo and non-buffalo milks. Buffalo_9, buffalo_10, buffalo_11 and buffalo_12 represented for 4 buffalo milk samples; cow_13, cow_14, cow_15 and cow_16 represented for 4 cow milk samples; pig_0_rep1, pig_0_rep2, pig_0_rep3, pig_3d, pig_7d, pig_14d, pig_21d and pig_28d represented for 8 pig milk samples; human_rep1, human_rep2, human_rep3 and human_rep4 represented for 4 human milk samples; panda_0d, panda_3d_rep1, panda_3d_rep2, panda_3d_rep3, panda_7d, panda_15d and panda_30d represented for 7 panda milk samples; logFC, log fold change; logCPM, log counts per million; FDR, false discovery rate.
DOI: 10.6084/m9.figshare.19311251
title: Additional file 6 of Host-microbiome protein-protein interactions capture disease-relevant pathways

description: Additional file 6: Table S5. Human interactors that are known drug targets. For each disease-associated human protein, we list the drug interactor (annotated using DrugCentral and DrugBank) and the study in which it was found to be important.
DOI: 10.6084/m9.figshare.16943682.v1
title: Additional file 4 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 4: Excel S3. RNA sequencing results.
DOI: 10.6084/m9.figshare.12218915.v1
title: Additional file 1 of Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes

description: Additional file 1.
DOI: 10.6084/m9.figshare.12750027
title: Additional file 6 of Contribution of anthocyanin pathways to fruit flesh coloration in pitayas

description: Additional file 6: Table S1. Ion intensity of the 444 metabolites detected in the three Hylocereus spp. cultivars. Data represent average values from six biological replicates. DH, FR, and BR represent the red, pink and white colored flesh samples, respectively.
DOI: 10.6084/m9.figshare.16943688.v1
title: Additional file 6 of ciRS-7 is a prognostic biomarker and potential gene therapy target for renal cell carcinoma

description: Additional file 6: Excel S5. Down-regulation of the protein KEGG enrichment-related pathway.
DOI: 10.6084/m9.figshare.16943816.v2
title: Interleukin-8 concentrations in obstructive sleep apnea syndrome: a systematic review and meta-analysis

description: Interleukin (IL)-8 has been shown to play an important role in obstructive sleep apnea syndrome (OSAS). However, its role in OSAS development is still controversial. This meta-analysis was to explore the correlation between interleukin (IL)-8 concentration and OSAS. Database (from the inception to July 2021) searches on PubMed, Web of Science, Medline, EMBASE, and Cochrane Library were conducted for studies analyzing the correlation between IL-8 concentration and OSAS, regardless of the language of publication. Standardized mean difference (SMD) and 95% confidence intervals (CI) were used to analyze any prospective association between IL-8 concentration and OSAS. A total of 25 eligible studies, including 2301 participants and 1123 controls, were included in this meta-analysis. The included studies evaluating the association between serum IL-8 concentration and OSAS indicated that adults and children with OSAS had elevated serum concentrations of IL-8 compared with controls (SMD = 0.997, 95% CI = 0.437–1.517, P &lt; 0.001; SMD = 0.431, 95% CI = 0.104–0.759, P = 0.01). Categorization of the study population into subgroups according to body mass index, apnea–hypopnea index (AHI), ethnicity, and sample size also showed that individuals with OSAS had elevated serum concentrations of IL-8 compared with controls. Additionally, the results demonstrated that the higher the AHI, higher was the IL-8 concentration. Similar results were observed in the literature on the association between plasma IL-8 concentration and OSAS. This meta-analysis verified that compared with controls, children and adults with OSAS have significantly elevated IL-8 concentrations.