cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3334/cdiac/atg.032
title: Recent Greenhouse Gas Concentrations

description: Gases typically measured in parts per million (ppm), parts per billion (ppb) or parts per trillion (ppt) are presented separately to facilitate comparison of numbers. Global Warming Potentials (GWPs) and atmospheric lifetimes are from the Intergovernmental Panel on Climate Change (IPCC, 2013, Table 8.A.1), except for the atmospheric lifetime of carbon dioxide (CO2) which is explained in footnote 4. Additional material on greenhouse gases can be found in CDIAC's Reference Tools. To find out how CFCs, HFCs, HCFCs, and halons are named, see Name that compound: The numbers game for CFCs, HFCs, HCFCs, and Halons. Concentrations given apply to the lower 75-80 percent of the atmosphere, known as the troposphere. Sources of the current and preindustrial concentrations of the atmospheric gases listed in the table below are given in the footnotes. Investigators at the National Oceanic and Atmospheric Administration have provided the recent concentrations. Much of the data provided results from the work of various investigators at institutions other than CDIAC, and represent considerable effort on their part. We ask as a basic professional courtesy that you acknowledge the primary sources, indicated in the footnotes below, or in the links given in the footnotes. Concentrations of ozone and water vapor are spatially and temporally variable due to their short atmospheric lifetimes. A vertically and horizontally averaged water vapor concentration is about 5,000 ppm. Globally averaged water vapor concentration is difficult to measure precisely because it varies from one place to another and from one season to the next. This precludes a precise determination of changes in water vapor since pre-industrial time. However, a warmer atmosphere will likely contain more water vapor than at present. For a more detailed statement on water vapor from the National Oceanic and Atmospheric Administration, see the "water vapor" page at http://lwf.ncdc.noaa.gov/oa/climate/gases.html
DOI: 10.5066/f7hq3xs4
title: U.S. Geological Survey GAGES-II time series data from consistent sources of land use, water use, agriculture, timber activities, dam removals, and other historical anthropogenic influences

description: This product is a series of ten datasets containing tabular data from historical time series sources for the 9,067 conterminous United States sites in the U.S. Geological Survey (USGS) Geospatial Attributes of Gages for Evaluating Streamflow II (GAGES-II) dataset. The tables contain time-series data derived from consistent sources of agricultural commodities such as crop types, irrigation, and livestock (1950-2012), dam removals (1930-2013), imperviousness (1974-2012 and 2001-2011) and forest canopy (2011), land use (1974-2012 and 2001-2011), estimated nutrients application from fertilizer and manure (1982 -2012), population and housing unit density (1940-2010), timber activities (1999-2012), water use (1985-2010), and dates of anthropogenic influences on flow recorded by USGS Water Science Centers.
DOI: 10.5258/soton/wp00684
title: Census/projection-disaggregated gridded population datasets for 189 countries in 2020 using Built-Settlement Growth Model (BSGM) outputs

description: Census/projection-disaggregated gridded population datasets for 189 countries in 2020 using Built-Settlement Growth Model (BSGM) outputs. Available at: https://www.worldpop.org/doi/10.5258/SOTON/WP00684
DOI: 10.5281/zenodo.10433647
title: Revisiting the time to publication in medical education: An analysis of publication timelines between 2019-2022

description: We conducted a bibliometric study that replicated and expanded upon a prior study on publication timelines in medical education, which had heavily drawn upon an earlier study that had investigated this topic broadly across scientific disciplines. To collect our data, we referenced The History of Publication Delays by Himmelstein ( https://blog.dhimmel.com/history-of-delays/.) - an analysis of publication delays up to 2015 utilizing the entire PubMed database. We used the original code that is deposited on Himmelstein's Github account with only minor modifications. The modifications included an update for a depreciated function within a Python package and minor adjustments to account for a smaller dataset. On October 10, 2023 JC queried the eSearch e-utility, an API interface, using the updated code to download summary metadata from the National Library of Medicine (NLM) for all included articles. This dataset represents the results of articles meeting our initial inclusion criteria: published in PubMed on or between January 1, 2018 and December 31, 2022.
DOI: 10.5281/zenodo.10899
title: Glottolog Database 2.3

description: Hammarström, Harald & Forkel, Robert & Haspelmath, Martin & Nordhoff, Sebastian. 2014. Glottolog 2.3. Leipzig: Max Planck Institute for Evolutionary Anthropology. (Available online at http://glottolog.org)
DOI: 10.5281/zenodo.13969122
title: Data and code for "Compulsivity is linked to suboptimal choice variability but unaltered reinforcement learning under uncertainty"

description: Data and code for "Compulsivity is linked to suboptimal choice variability but unaltered reinforcement learning under uncertainty". See https://github.com/jlexternal/RLVOLUNP_CIT_ana for directory structure.
DOI: 10.5523/bris.1ovaau5sxunp2cv8rcy88688v
title: UK Biobank Genetic Data: MRC-IEU Quality Control, version 2

description: This is a full description of the quality control procedure undertaken and the derived files produced by the MRC-IEU associated with the full UK Biobank (version 3, March 2018) genetic data.

This dataset supersedes the earlier version available at DOI: 10.5523/bris.3074krb6t2frj29yh2b03x3wxj
DOI: 10.6084/m9.figshare.25416598
title: Environmental filtering, not dispersal history, explains global patterns of phylogenetic turnover in seed plants at deep evolutionary timescales

description: Data and codes from Cai et al., 2024
DOI: 10.6084/m9.figshare.28182167
title: Supplementary Material for: Efficacy and safety of GutGard® in managing gastro-esophageal reflux (GER)-related symptoms - A Phase III, single centre, double-blind, randomized placebo-controlled trial

description: Introduction: Liquorice (Glycyrrhiza glabra) is a traditional herbal remedy with various pharmacological activities mainly used for digestive and respiratory ailments. GutGard® is a flavonoid-rich, deglycyrrhinizated liquorice root extract and is standardized to glabridin (≥3.5% w/w), glabrol (≥0.5% w/w), eicosanyl caffeate (≥0.1% w/w), docosyl caffeate (≥0.1% w/w) and total flavonoids (≥10% w/w) with glycyrrhizin (≤0.5% w/w) as glycyrrhizin causes electrolyte imbalance, hypertension and water retention. . Hence, the objective of the current study was to assess the efficacy, safety and tolerability of GutGard® in managing gastro-esophageal reflux (GER) related symptoms when compared to placebo. 
Methods: It was a double blind, parallel group, randomized, placebo-controlled trial with participants randomized in a 1:1 ratio to either the placebo group or GutGard® group. The duration of the interventions/treatment was for 28 days and the follow-up visits were done at day-7, day-14, day-28 and day-35. A telephonic follow-up was also done on day-21. The primary outcome measures studied was the change in the Gastroesophageal Reflux Disease – Health Related Quality of Life (GERD- HRQL) and the Gastroesophageal Reflux Disease Symptom Assessment Scale (GSAS). 
Results: We screened a total of n=296 participants and enrolled n=200 participants and obtained written, informed consent from them. Participants in the GutGard® group reported a significantly better quality of life at the end of the intervention period (p = 0.014). They also reported earlier resolution of symptoms of GER as against the placebo group especially the symptoms of heartburn (p = 0.017 on day-14 and p = 0.005 on day-28) and regurgitation (p = 0. 025 on day-7, p = 0.029 on day-14 and p = 0.022 on day-28). 
Conclusions: The GutGard® group showed better and earlier resolution (within two weeks) of symptoms of GER as against the placebo group especially heartburn and regurgitation.
DOI: 10.6084/m9.figshare.28366244
title: Supplementary Material for: GAPDH, β-actin, and β-tubulin display age-dependent protein expression changes in the mouse cortex during development

description: GAPDH, β-actin, and β-tubulin are essential housekeeping proteins commonly used as reference controls for protein expression studies. GAPDH is a key glycolytic enzyme that facilitates the production of cellular energy, while β-actin and β-tubulin are major structural components of the cytoskeleton. Besides their well-established housekeeping functions, emerging studies have demonstrated critical roles for these proteins in brain developmental and pathological processes. However, few studies have examined how the expression patterns of these proteins change throughout mammalian brain development to adulthood. Considering the dynamic structural and functional changes that occur during brain development and the roles of GAPDH, β-actin, and β-tubulin in related biological processes, we investigated the developmental expression levels of these proteins in the mouse cortex at various embryonic (E15-P0) and postnatal (P0-P20, adult) stages using western blotting analysis with total protein normalization. We identified a substantial increase in GAPDH protein levels and a decrease in β-actin and β-tubulin in protein levels in the mouse cortex between birth and early adulthood, which occurred during the second week of postnatal life. Analysis of RNA-seq data from the ENCODE Consortium revealed correlated changes at the RNA transcript level. Overall, our study reveals robust age-dependent changes in cortical GAPDH, β-actin, and β-tubulin expression levels during mouse postnatal development and suggests precautions when using these proteins as reference controls in cortical development studies.
DOI: 10.6084/m9.figshare.28377749
title: Supplementary Material for: Single Cell Transcriptomic Analysis of Myeloid Lineage Evolution from CD19 CAR-T Cell Therapy

description: Introduction: We report a case of relapse and refractory acute B lymphoblastic leukemia (r/r B-ALL) apparent turned to acute myeloid leukemia (AML), which is occasional and fatal during CAR-T treatment. There are still limited data to clarify the molecular mechanism of myeloid blast populations proliferation during CAR-T treatment.
Case Presentation: A 21-year-old man with an established history of r/r B-ALL with a complex chromosome karyotype and renal extramedullary infiltration presented to our institution. He exhibited a rapid relapse with acute monocytic leukemia 19 days after CD19 CAR-T cell infusion with extensive infiltration of skin and brain. Salvage chemotherapy was ineffective, and he subsequently succumbed to the uncontrolled invasion and infiltration of leukemia cells and hemorrhage. RNA velocity analysis predicted that HSCs differentiated into GMPs and then GMPs differentiated into myeloid lineage cells. The ANXA1-FPR1/2 axis expression was significantly increased post-treatment, which promotes tumor cell proliferation, invasion and angiogenesis. 6q deletion (6q-) was the common genetic abnormality across all cell populations, indicating that 6q- conferred a survival ability to HSCs during CAR-T cell therapy.
Conclusions: This case demonstrates potential mechanisms of clone evolution molecular events that CD19 CAR-T cell infusion accelerated the existing myeloid lineage evolution via ANXA1-FPR1/2 axis expression from HSCs with 6q-. (Cyto-)genetic aberrations and/or pathways previously not included in the risk stratification of B-ALL might well be predictive for response and outcome in the era of immunotherapy.
DOI: 10.15139/s3/sxayts
title: Replication Data for: Party Over Principles: Determinants of Public Opinion on Redistricting Reform

description: How does the mass public form attitudes on electoral rules and reforms? Existing research on this question reveals a trade-off between principles, such as fairness, and partisan self-interest. I use two survey experiments on state legislative redistricting to explore how voters weigh principles against partisan self-interest when forming opinions on electoral reforms. First, I ask whether the public’s partisan self-interest motivation stems more from individual representation considerations or broader partisan power considerations. I find that both considerations provide a powerful enough incentive to activate partisan self-interest regarding preferences for state legislative district maps. Unexpectedly, the two considerations have quite similar effects on public support for redistricting reforms. Second, I explore the principles versus partisan self-interest trade-off through the lens of loss aversion, a concept developed in behavioral economics. In line with expectations, I find that preventing loss provides a more powerful incentive for Americans to violate democratic principles than achieving partisan gain. In sum, this research sheds light on voters' decision between principles and partisan self-interest in the formation of opinion on electoral reform.
DOI: 10.15468/dl.qppgcf
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peregrinator biannulipes (Montrouzier & Signoret, 1861)"
 ]
}

 The dataset includes 65 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024814-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15470/lve3wn
title: Data set: Only-presence data for wild ungulates and red fox in Spain based on hunting yields

description: The data sets provide long-term information of the only-presence of eight wild ungulates and red fox derived from harvest data from Spain in a 5 x 5 squared grid (21,836 cells) of the European Environment Agency. The collected data has been processed and reported yearly, in accordance with Habitats Directive from the European Union to facilitate data reporting about the State of nature. Data sets are structured following the Darwin Core biological standard. The information will be updated periodically to cover missing data. 
Dataset is under external review an will be released as soon as possible.
DOI: 10.17632/55phb4xw5k.1
title: GIS data - Flood Exposure of Environmental Assets - Tuscany, Italy

description: Environmental Assets Shapefiles for Flood Exposure Analysis in Tuscany, Italy

This dataset contains geographic information system (GIS) data in the form of shapefiles representing the environmental assets analyzed in the study on flood exposure in the Tuscany region, Italy. The dataset was compiled as part of the research introducing the EnvXflood method, which assesses the qualitative exposure of environmental assets to river floods.

Contents of the Dataset:
Environmental Asset Layers: shapefiles representing various types of environmental assets, including rivers, lakes, wetlands, forests, and other environmental significant assets identified in the study.
Flood Exposure Classification: attribute data indicating the relative exposure levels of each asset based on the developed methodology (Field: EEVi,2).
Data Source Information: a CSV file listing the original sources of the environmental data, which must be cited when the data are reused, is included.

Data Ownership & Attribution:
The data included in this dataset are not the property of the authors but originate from external sources, as specified in the accompanying CSV file.
If the data are reused, the original sources must always be cited in accordance with their respective attribution requirements.
The dataset has been modified by the authors for the purposes of the study, including processing, classification, and adaptation to the EnvXflood method.
Data Format:
File Type: ESRI Shapefile (.shp, .shx, .dbf, .prj, qmd)
Coordinate System: EPSG:3003
Attribute Information: each shapefile includes relevant attributes such as asset type, exposure classification, and associated values.

Limitations & Disclaimer:
The dataset is provided as is, without any warranty regarding its accuracy, completeness, or suitability for specific applications.
Exposure classification is qualitative and should be interpreted within the framework of the EnvXflood method.
The data are specific to the Tuscany region and may not be directly applicable to other geographic areas without adaptation.

Date of last access to sources: 06/02/2025

Citation:
When using this dataset, please also cite the corresponding research paper: 
Bertoli, G., Arrighi, C., and Caporali, E.: Flood exposure of environmental assets, Nat. Hazards Earth Syst. Sci. Discuss. [preprint], https://doi.org/10.5194/nhess-2024-105
DOI: 10.17632/npfst3y4rk.1
title: Font legibility simulation data

description: This dataset contains simulation results for font legibility measurement.
DOI: 10.18739/a2057ct96
title: Household Migration Decisions and Climate Variables of Nenets Reindeer Herders in Northern Siberia (Yamal Peninsula), 2001-2022

description: Nenets reindeer pastoralists on the Yamal Peninsula of the Russian Arctic have demonstrated success in dealing with rapidly changing climatic conditions and the growing built environment associated with the natural gas industry. We pair our observations of a set of 28 Nenets households with hydrometeorological data to better understand the challenges of reindeer nomadism in this time of unprecedented change. We assembled a data set based on our ethnographic work with reindeer herding households beginning in 2001 through 2022, following 28 households at irregular intervals. The source of these data include surveys, participant observation, and digital communication. For this analysis we extracted information and coded variables for: reindeer herd size, migration distances, locations of summer and winter camps, annual frequency of camp movement, changes in migration patterns, and reasons for choice of migration route. These data were combined with relevant weather parameters derived from the ERA5 reanalysis data product for the immediate areas (30 kilometer (km) grid) surrounding summer and winter camps. We conducted a Bayesian logistic regression using the brms package in R Statistical Software (v4.1.2) analyzing factors contributing to ‘change’ or ‘no change’ in migration routes. Five ERA5 climate variables representing summer heating and winter warming and rain on snow (ROS) events were z-score normalized. Year of observation was treated as a factor. Posterior distribution of climate variables showed no discernable effects on household migration decisions.
DOI: 10.24432/c5r30r
title: MONK's Problems
DOI: 10.5066/f71n800h
title: Waterfowl Nests in Native- and Tame-Seeded Conservation Fields, North and South Dakota, 2002-2003

description: This dataset accompanies a manuscript titled "Density and success of upland duck nests in native- and tame-seeded conservation fields in the Prairie Pothole Region". The abstract of the manuscript follows: The Conservation Reserve Program (CRP) generates substantial benefits to continental duck populations by providing grassland nesting habitat in rested cropland. Seeding mixes of CRP grasslands vary among numerous conservation practices, but one contrast of interest in the Prairie Pothole Region is the use of introduced, or �tame� grass vs. native grasses. Although the benefits of CRP to duck populations are well known, relative values of these planting practices to nesting ducks has received little attention. Understanding differences in benefits to ducks due to planting practices would aid in prioritizing and selecting management practices for CRP and other restoration activities. We evaluated nest survival and nest density of ducks nesting in tame- and native-seeded CRP fields in 36 study areas spread throughout the Prairie Pothole Region of North and South Dakota during 2002�2003. We searched for duck nests in 209 fields totaling 5,386 ha and found 2941 nests. We found no support for differences in nest survival for any upland-nesting duck species between fields seeded to tame vs native grass based on a design and analyses that accounted for spatial and temporal variation and surrounding grassland patch size. Additionally, nest densities, adjusted for nest survival rates, of all duck species were similar between tame-seeded and native-seeded fields. We conclude that benefits to nesting ducks from native-grass seeding practices of CRP are similar to those of tame-grass seeding practices. While there may be other reasons to plant native seed mixes when establishing CRP tracts, this study suggest that duck settling and nest survival are not among those reasons.
DOI: 10.5258/soton/wp00702
title: Unconstrained national Population Weighted Density in 2000, 2005, 2010, 2015 and 2020 ( 1km resolution )

description: Unconstrained national Population Weighted Density in 2000, 2005, 2010, 2015 and 2020 ( 1km resolution )
DOI: 10.5281/zenodo.13293991
title: The optical absorption in semiconductor to semimetal PtSe2 arises from direct transitions - Supporting data

description: Data supporting the findings of the work:

M. Tharrault, S. Ayari, M. Arfaoui, E. Desgué, R. Le Goff, P. Morfin, J. Palomo, M. Rosticher, S. Jaziri, B. Plaçais, P. Legagneux, F. Carosella, C. Voisin, R. Ferreira and E. Baudin, The optical absorption in semiconductor to semimetal PtSe2 arises from direct transitions, arXiv:2311.01847 [cond-mat.mtrl-sci].

 

The sample names in this study match those used in the Raman spectroscopy focused study https://doi.org/10.1088/2053-1583/ad1e79. Data from that study can be accessed at https://doi.org/10.5281/zenodo.8256907.

See the Supplemental Material for extra details.

 

Files available:

Optical absorption spectroscopy.zip: reflectance, transmittance, real and imaginary 2D optical conductivity for exfoliated and MBE samples.

Differential reflectance with temperature.zip: differential reflectance Delta R / R pour 4 exfoliated thin samples and temperatures from 290K to 440K.

Layers label attribution.txt: number of layers for each sample.

Selected samples fig1.txt: list of samples displayed in the figure 1 of the publication.

Band diagrams.zip: Band diagrams for GGA-computed 1-12L and AB stacked bilayers as well as GW and HSE06 computed 1L and the k-points path used for the diagrams.

Optical conductivity DFT.zip: real 2D optical conductivity and jDOS computed using GGA-IPA for 1-12L and AB stacked bilayers.

Optical absorption 1L different models.csv: GGA-IPA, GW-IPA, GW-BSE and HSE06-IPA real 2D optical conductivities for the monolayer.

1L optical absorption with temperature DFT.csv: 2D real optical conductivity of 1L PtSe2 computed with EPW/ZG Quantum Espresso package for T = 0 K to 450 K.

1L electronic spectral function with temperature.zip: electronic spectral function for 1L PtSe2 for T = 0, 300 and 450 K.

Atomic orbitals decomposition.zip: band diagrams and the corresponding orbital components, as displayed in Supplemental Material.

Electronic bandgap correction.txt: GGA computed bandgaps and corrected by the energy shift.
DOI: 10.5291/ill-data.crg-2450
title: Determination of the magnetic structure of rare earth-based, nono-lamellar MAX phases
DOI: 10.5441/002/edbt.2014.14
title: Query-Based Why-Not Provenance with NedExplain