cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3565230
title: Supplement 1. An R library to calculate the spline correlogram and cross-correlogram.

description: File List ecolsupl.pdf -- Description of R library for calculating spline (cross-) correlograms ecolsupl_1.0-0.zip -- R library for calculating spline (cross-) correlograms compressed using zip ecolsupl_1.0-0.tar.gz -- tar archive containing R library for calculating spline (cross-) correlograms compressed using zip Description R functions for analyzing spatial (cross-)covariance. This is a stripped down version of the ncf library (written and maintained by the author). Note that the ecolsupl will NOT be maintained beyond version 1.0-0. Version: 1.0-0<br> Date: 2004/06/08<br> Depends: R(&gt;=1.9)<br> Maintainer: Ottar N. Bjørnstad<br> Author: Ottar N. Bjørnstad<br> URL: http://onb.ent.psu.edu/onb1/R<br> License: GPL<br> Built: R 1.9.0;;2004-06-08 17:02:46; unix<br> Packaged: Tue Jun 8 17:04:08 2004; onb1 Built: R 1.9.0;;2004-06-08 17:05:15; windows To install library in R, download ecolsupl\_1.0-0.zip (Windows) or ecolsupl\_1.0-0.tar.gz (Linux/UNIX) to a local disk, and use (in Unix) "R CMD INSTALL ecolsupl_1.0-0.tar.gz", or (in Windows) the "Packages/Install from local zip files" menu item to install the package. R itself can be downloaded from http://www.R-project.org/
DOI: 10.6084/m9.figshare.3565230.v1
title: Supplement 1. An R library to calculate the spline correlogram and cross-correlogram.

description: File List ecolsupl.pdf -- Description of R library for calculating spline (cross-) correlograms ecolsupl_1.0-0.zip -- R library for calculating spline (cross-) correlograms compressed using zip ecolsupl_1.0-0.tar.gz -- tar archive containing R library for calculating spline (cross-) correlograms compressed using zip Description R functions for analyzing spatial (cross-)covariance. This is a stripped down version of the ncf library (written and maintained by the author). Note that the ecolsupl will NOT be maintained beyond version 1.0-0. Version: 1.0-0<br> Date: 2004/06/08<br> Depends: R(&gt;=1.9)<br> Maintainer: Ottar N. Bjørnstad<br> Author: Ottar N. Bjørnstad<br> URL: http://onb.ent.psu.edu/onb1/R<br> License: GPL<br> Built: R 1.9.0;;2004-06-08 17:02:46; unix<br> Packaged: Tue Jun 8 17:04:08 2004; onb1 Built: R 1.9.0;;2004-06-08 17:05:15; windows To install library in R, download ecolsupl\_1.0-0.zip (Windows) or ecolsupl\_1.0-0.tar.gz (Linux/UNIX) to a local disk, and use (in Unix) "R CMD INSTALL ecolsupl_1.0-0.tar.gz", or (in Windows) the "Packages/Install from local zip files" menu item to install the package. R itself can be downloaded from http://www.R-project.org/
DOI: 10.6084/m9.figshare.3565227
title: Appendix A. Derivation of the hypothesis of equal allocation probabilities (HEAP) from an assembly function.

description: Derivation of the hypothesis of equal allocation probabilities (HEAP) from an assembly function.
DOI: 10.6084/m9.figshare.3565227.v1
title: Appendix A. Derivation of the hypothesis of equal allocation probabilities (HEAP) from an assembly function.

description: Derivation of the hypothesis of equal allocation probabilities (HEAP) from an assembly function.
DOI: 10.6084/m9.figshare.3565224
title: Appendix A. A table showing the pinniped estimates of life-history traits used in the analysis.

description: A table showing the pinniped estimates of life-history traits used in the analysis.
DOI: 10.6084/m9.figshare.3565224.v1
title: Appendix A. A table showing the pinniped estimates of life-history traits used in the analysis.

description: A table showing the pinniped estimates of life-history traits used in the analysis.
DOI: 10.6084/m9.figshare.3565221
title: Appendix A. A list of references containing data used in the analyses.

description: A list of references containing data used in the analyses.
DOI: 10.6084/m9.figshare.3565221.v1
title: Appendix A. A list of references containing data used in the analyses.

description: A list of references containing data used in the analyses.
DOI: 10.6084/m9.figshare.3565218
title: Appendix A. A description of the methods used to estimate vital rates and compute bootstrap confidence intervals for sensitivities and elasticities.

description: A description of the methods used to estimate vital rates and compute bootstrap confidence intervals for sensitivities and elasticities.
DOI: 10.6084/m9.figshare.3565218.v1
title: Appendix A. A description of the methods used to estimate vital rates and compute bootstrap confidence intervals for sensitivities and elasticities.

description: A description of the methods used to estimate vital rates and compute bootstrap confidence intervals for sensitivities and elasticities.
DOI: 10.6084/m9.figshare.3565215
title: Appendix B. A table showing stochastic sensitivities to the vital rate means in five populations.

description: A table showing stochastic sensitivities to the vital rate means in five populations.
DOI: 10.6084/m9.figshare.3565215.v1
title: Appendix B. A table showing stochastic sensitivities to the vital rate means in five populations.

description: A table showing stochastic sensitivities to the vital rate means in five populations.
DOI: 10.6084/m9.figshare.3565212
title: Appendix C. A table showing stochastic elasticities to the vital rate means in five study populations.

description: A table showing stochastic elasticities to the vital rate means in five study populations.
DOI: 10.6084/m9.figshare.3565212.v1
title: Appendix C. A table showing stochastic elasticities to the vital rate means in five study populations.

description: A table showing stochastic elasticities to the vital rate means in five study populations.
DOI: 10.6084/m9.figshare.3565209
title: Appendix D. A table showing stochastic sensitivities to the vital rate standard deviations in five study populations.

description: A table showing stochastic sensitivities to the vital rate standard deviations in five study populations.
DOI: 10.6084/m9.figshare.3565209.v1
title: Appendix D. A table showing stochastic sensitivities to the vital rate standard deviations in five study populations.

description: A table showing stochastic sensitivities to the vital rate standard deviations in five study populations.
DOI: 10.6084/m9.figshare.3565206
title: Appendix E. A table showing stochastic elasticities to the vital rate standard deviations in five study populations.

description: A table showing stochastic elasticities to the vital rate standard deviations in five study populations.
DOI: 10.6084/m9.figshare.3565206.v1
title: Appendix E. A table showing stochastic elasticities to the vital rate standard deviations in five study populations.

description: A table showing stochastic elasticities to the vital rate standard deviations in five study populations.
DOI: 10.6084/m9.figshare.3565203
title: Appendix F. A table of absolute values of stochastic sensitivities and elasticities to the vital rate means and standard deviations summed over vital rate types in five study populations.

description: A table of absolute values of stochastic sensitivities and elasticities to the vital rate means and standard deviations summed over vital rate types in five study populations.
DOI: 10.6084/m9.figshare.3565203.v1
title: Appendix F. A table of absolute values of stochastic sensitivities and elasticities to the vital rate means and standard deviations summed over vital rate types in five study populations.

description: A table of absolute values of stochastic sensitivities and elasticities to the vital rate means and standard deviations summed over vital rate types in five study populations.
DOI: 10.6084/m9.figshare.3565200
title: Supplement 1. Vital rates and projection matrices.

description: File List survival rates.txt<br> survival variances.txt<br> growth rates.txt<br> growth variances.txt<br> reversion rates.txt<br> reversion variances.txt<br> fruit production rates.txt<br> sigma mu gamma.txt<br> h1.txt<br> h2.txt<br> h3.txt<br> k1.txt<br> k2.txt<br> k3.txt<br> k4.txt<br> k6.txt<br> CC95.txt<br> CC96.txt<br> CC97.txt<br> CC98.txt<br> CC99.txt<br> GU95.txt<br> GU96.txt<br> GU97.txt<br> GU98.txt<br> GU99.txt<br> PA95.txt<br> PA96.txt<br> PA97.txt<br> PA98.txt<br> PA99.txt<br> RG95.txt<br> RG96.txt<br> RG97.txt<br> RG98.txt<br> RG99.txt<br> RI95.txt<br> RI96.txt<br> RI97.txt<br> RI98.txt<br> RI99.txt<br> silene.m<br> All files at once Description This supplement contains the estimates for all vital rates, the sampling-variation-corrected variances of the survival, growth, and reversion probabilities (i.e., <i>s</i><sub>0</sub> through <i>s</i><sub>12</sub>, <i>g</i><sub>3 </sub>through <i>g</i><sub>11</sub>, and <i>r</i><sub>4 </sub>through <i>r</i><sub>12 </sub>[see text]), and the compiled projection matrices for all sites and years. These can be downloaded as ASCII files or as MATLAB code, as described below. The following comma-delimited ASCII files contain vital rate estimates. Each has 25 rows, corresponding to the 5 sites in alphabetical order (CC, GU, PA, RG, and RI) and the 5 years nested within site (1995 through 1999): -- TABLE: Please see in attached file. -- Note: all other <i>h </i>and <i>k</i> values are zero. The following ASCII files contain sampling-variation-corrected variances for survival, growth, and reversion probabilities. Each file has 5 rows, corresponding to the 5 sites in alphabetical order. "-1" indicates that estimates of a rate could not be obtained for each year, so the variance could not be computed. No correction for sampling variation was made for the other vital rates (see text); hence their variances can be computed directly from the raw values. -- TABLE: Please see in attached file. -- The compiled projection matrices are stored in 25 comma-delimited ASCII files, the names of which correspond to the site and year. For example, "CC95.txt" contains the single projection matrix for the CC population in 1995. The file "silene.m" contains MATLAB code that will produce arrays containing the vital rate estimates for each site by year combination, the vital rate means, the vital rate variances (corrected for sampling variation for survival, growth, and reversion probabilities), the annual projection matrices for each site by year combination, and the mean projection matrices for each site. Comments in the MATLAB code describe the structure of each variable created.
DOI: 10.6084/m9.figshare.3565200.v1
title: Supplement 1. Vital rates and projection matrices.

description: File List survival rates.txt<br> survival variances.txt<br> growth rates.txt<br> growth variances.txt<br> reversion rates.txt<br> reversion variances.txt<br> fruit production rates.txt<br> sigma mu gamma.txt<br> h1.txt<br> h2.txt<br> h3.txt<br> k1.txt<br> k2.txt<br> k3.txt<br> k4.txt<br> k6.txt<br> CC95.txt<br> CC96.txt<br> CC97.txt<br> CC98.txt<br> CC99.txt<br> GU95.txt<br> GU96.txt<br> GU97.txt<br> GU98.txt<br> GU99.txt<br> PA95.txt<br> PA96.txt<br> PA97.txt<br> PA98.txt<br> PA99.txt<br> RG95.txt<br> RG96.txt<br> RG97.txt<br> RG98.txt<br> RG99.txt<br> RI95.txt<br> RI96.txt<br> RI97.txt<br> RI98.txt<br> RI99.txt<br> silene.m<br> All files at once Description This supplement contains the estimates for all vital rates, the sampling-variation-corrected variances of the survival, growth, and reversion probabilities (i.e., <i>s</i><sub>0</sub> through <i>s</i><sub>12</sub>, <i>g</i><sub>3 </sub>through <i>g</i><sub>11</sub>, and <i>r</i><sub>4 </sub>through <i>r</i><sub>12 </sub>[see text]), and the compiled projection matrices for all sites and years. These can be downloaded as ASCII files or as MATLAB code, as described below. The following comma-delimited ASCII files contain vital rate estimates. Each has 25 rows, corresponding to the 5 sites in alphabetical order (CC, GU, PA, RG, and RI) and the 5 years nested within site (1995 through 1999): -- TABLE: Please see in attached file. -- Note: all other <i>h </i>and <i>k</i> values are zero. The following ASCII files contain sampling-variation-corrected variances for survival, growth, and reversion probabilities. Each file has 5 rows, corresponding to the 5 sites in alphabetical order. "-1" indicates that estimates of a rate could not be obtained for each year, so the variance could not be computed. No correction for sampling variation was made for the other vital rates (see text); hence their variances can be computed directly from the raw values. -- TABLE: Please see in attached file. -- The compiled projection matrices are stored in 25 comma-delimited ASCII files, the names of which correspond to the site and year. For example, "CC95.txt" contains the single projection matrix for the CC population in 1995. The file "silene.m" contains MATLAB code that will produce arrays containing the vital rate estimates for each site by year combination, the vital rate means, the vital rate variances (corrected for sampling variation for survival, growth, and reversion probabilities), the annual projection matrices for each site by year combination, and the mean projection matrices for each site. Comments in the MATLAB code describe the structure of each variable created.
DOI: 10.6084/m9.figshare.3565197
title: Appendix A. Quantification of habitat extent, fish, and benthic taxa at Capraia and Giannutri, Italy.

description: Quantification of habitat extent, fish, and benthic taxa at Capraia and Giannutri, Italy.
DOI: 10.6084/m9.figshare.3565197.v1
title: Appendix A. Quantification of habitat extent, fish, and benthic taxa at Capraia and Giannutri, Italy.

description: Quantification of habitat extent, fish, and benthic taxa at Capraia and Giannutri, Italy.
DOI: 10.6084/m9.figshare.3565194
title: Appendix B. A table giving total fish abundances at Capraia and Giannutri in May, October, and December 2000.

description: A table giving total fish abundances at Capraia and Giannutri in May, October, and December 2000.
DOI: 10.6084/m9.figshare.3565194.v1
title: Appendix B. A table giving total fish abundances at Capraia and Giannutri in May, October, and December 2000.

description: A table giving total fish abundances at Capraia and Giannutri in May, October, and December 2000.
DOI: 10.6084/m9.figshare.3565191
title: Appendix C. A table with results of similarity percentage (SIMPER) analyses showing major species characterizing fish assemblages at locations with different regimes of protection and exposure of the coastline at Capraia and Giannutri.

description: A table with results of similarity percentage (SIMPER) analyses showing major species characterizing fish assemblages at locations with different regimes of protection and exposure of the coastline at Capraia and Giannutri.
DOI: 10.6084/m9.figshare.3565191.v1
title: Appendix C. A table with results of similarity percentage (SIMPER) analyses showing major species characterizing fish assemblages at locations with different regimes of protection and exposure of the coastline at Capraia and Giannutri.

description: A table with results of similarity percentage (SIMPER) analyses showing major species characterizing fish assemblages at locations with different regimes of protection and exposure of the coastline at Capraia and Giannutri.
DOI: 10.6084/m9.figshare.3565188
title: Appendix D. A table giving major species discriminating benthic assemblages sampled at 3–5 and 8–10 m depths at locations with different exposure of the coastline at Capraia and Giannutri, Italy.

description: A table giving major species discriminating benthic assemblages sampled at 3–5 and 8–10 m depths at locations with different exposure of the coastline at Capraia and Giannutri, Italy.
DOI: 10.6084/m9.figshare.3565188.v1
title: Appendix D. A table giving major species discriminating benthic assemblages sampled at 3–5 and 8–10 m depths at locations with different exposure of the coastline at Capraia and Giannutri, Italy.

description: A table giving major species discriminating benthic assemblages sampled at 3–5 and 8–10 m depths at locations with different exposure of the coastline at Capraia and Giannutri, Italy.
DOI: 10.6084/m9.figshare.3565185
title: Appendix A. A photograph showing a view of the grassland sites upslope.

description: A photograph showing a view of the grassland sites upslope.
DOI: 10.6084/m9.figshare.3565185.v1
title: Appendix A. A photograph showing a view of the grassland sites upslope.

description: A photograph showing a view of the grassland sites upslope.
DOI: 10.6084/m9.figshare.3565182
title: Appendix B. A photograph of PCR-RFLP analysis of narG sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzyme AluI.

description: A photograph of PCR-RFLP analysis of narG sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzyme AluI.
DOI: 10.6084/m9.figshare.3565182.v1
title: Appendix B. A photograph of PCR-RFLP analysis of narG sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzyme AluI.

description: A photograph of PCR-RFLP analysis of narG sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzyme AluI.
DOI: 10.6084/m9.figshare.3565179
title: Appendix C. A photograph of DGGE analysis of 16S rRNA gene sequences of ammonia oxidizers from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope).

description: A photograph of DGGE analysis of 16S rRNA gene sequences of ammonia oxidizers from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope).
DOI: 10.6084/m9.figshare.3565176
title: Appendix D. A photograph of PCR-RFLP analysis of nifH sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzymes NdeII and MnlI.

description: A photograph of PCR-RFLP analysis of nifH sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzymes NdeII and MnlI.
DOI: 10.6084/m9.figshare.3565179.v1
title: Appendix C. A photograph of DGGE analysis of 16S rRNA gene sequences of ammonia oxidizers from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope).

description: A photograph of DGGE analysis of 16S rRNA gene sequences of ammonia oxidizers from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope).
DOI: 10.6084/m9.figshare.3565176.v1
title: Appendix D. A photograph of PCR-RFLP analysis of nifH sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzymes NdeII and MnlI.

description: A photograph of PCR-RFLP analysis of nifH sequences from the intensive grazing (IG) and light grazing (LG) grassland sites, at two topographical locations (downslope and upslope) with restriction enzymes NdeII and MnlI.
DOI: 10.6084/m9.figshare.3565173
title: Appendix E. A table of size (in bp) of bands specific of either IG or LG treatments (i.e., bands discriminating IG vs. LG samples in PCA) for the nitrate reducing and free N2-fixing communities.

description: A table of size (in bp) of bands specific of either IG or LG treatments (i.e., bands discriminating IG vs. LG samples in PCA) for the nitrate reducing and free N2-fixing communities.
DOI: 10.6084/m9.figshare.3565173.v1
title: Appendix E. A table of size (in bp) of bands specific of either IG or LG treatments (i.e., bands discriminating IG vs. LG samples in PCA) for the nitrate reducing and free N2-fixing communities.

description: A table of size (in bp) of bands specific of either IG or LG treatments (i.e., bands discriminating IG vs. LG samples in PCA) for the nitrate reducing and free N2-fixing communities.
DOI: 10.6084/m9.figshare.3565167
title: Appendix A. Estimation of quadratic reduced-rank vector generalized linear models (QRR-VGLMs).

description: Estimation of quadratic reduced-rank vector generalized linear models (QRR-VGLMs).
DOI: 10.6084/m9.figshare.3565167.v1
title: Appendix A. Estimation of quadratic reduced-rank vector generalized linear models (QRR-VGLMs).

description: Estimation of quadratic reduced-rank vector generalized linear models (QRR-VGLMs).
DOI: 10.6084/m9.figshare.3565164
title: Appendix B. Constraints-on-the-functions and the scaling parameter.

description: Constraints-on-the-functions and the scaling parameter.
DOI: 10.6084/m9.figshare.3565161
title: Appendix A. A table listing study sites by region, with latitude and longitude and physical characteristics.

description: A table listing study sites by region, with latitude and longitude and physical characteristics.
DOI: 10.6084/m9.figshare.3565161.v1
title: Appendix A. A table listing study sites by region, with latitude and longitude and physical characteristics.

description: A table listing study sites by region, with latitude and longitude and physical characteristics.
DOI: 10.6084/m9.figshare.3565158
title: Appendix B. A photograph of a replicate of the predation-rate experiment at Gull Haven, Oregon, USA.

description: A photograph of a replicate of the predation-rate experiment at Gull Haven, Oregon, USA.
DOI: 10.6084/m9.figshare.3565158.v1
title: Appendix B. A photograph of a replicate of the predation-rate experiment at Gull Haven, Oregon, USA.

description: A photograph of a replicate of the predation-rate experiment at Gull Haven, Oregon, USA.
DOI: 10.6084/m9.figshare.3565155
title: Appendix C. A table showing timing and duration of predation-rate experiments.

description: A table showing timing and duration of predation-rate experiments.
DOI: 10.6084/m9.figshare.3565155.v1
title: Appendix C. A table showing timing and duration of predation-rate experiments.

description: A table showing timing and duration of predation-rate experiments.
DOI: 10.6084/m9.figshare.3565152
title: Appendix D. Nine tables showing results of statistical analyses on variation in (1) chlorophyll a, (2) mussel recruitment, (3) mussel growth, (4) mussel cover, (5) mussel cover in the middle zone, (6) mussel cover in the low zone, (7) sea star density, (8) predation rates (per population), and (9) predation rates (per capita).

description: Nine tables showing results of statistical analyses on variation in (1) chlorophyll a, (2) mussel recruitment, (3) mussel growth, (4) mussel cover, (5) mussel cover in the middle zone, (6) mussel cover in the low zone, (7) sea star density, (8) predation rates (per population), and (9) predation rates (per capita).
DOI: 10.6084/m9.figshare.3565152.v1
title: Appendix D. Nine tables showing results of statistical analyses on variation in (1) chlorophyll a, (2) mussel recruitment, (3) mussel growth, (4) mussel cover, (5) mussel cover in the middle zone, (6) mussel cover in the low zone, (7) sea star density, (8) predation rates (per population), and (9) predation rates (per capita).

description: Nine tables showing results of statistical analyses on variation in (1) chlorophyll a, (2) mussel recruitment, (3) mussel growth, (4) mussel cover, (5) mussel cover in the middle zone, (6) mussel cover in the low zone, (7) sea star density, (8) predation rates (per population), and (9) predation rates (per capita).
DOI: 10.6084/m9.figshare.3565149
title: Appendix A. A list of non-oak woody species used in the gradient analyses.

description: A list of non-oak woody species used in the gradient analyses.
DOI: 10.6084/m9.figshare.3565149.v1
title: Appendix A. A list of non-oak woody species used in the gradient analyses.

description: A list of non-oak woody species used in the gradient analyses.
DOI: 10.6084/m9.figshare.3565146
title: Appendix B. A table showing leaf-level traits for 17 oak species.

description: A table showing leaf-level traits for 17 oak species.