cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2h8pzg
title: CCDC 2302276: Experimental Crystal Structure Determination

description: Related Article: Charles E Kriley, Allen G Oliver, Alexander J Blank, Anne A Leaman, Jed A Speers|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8tsd
title: CCDC 2302394: Experimental Crystal Structure Determination

description: Related Article: Mesto, Ernesto, Pacifico, Concetta, Intini, Francesco Paolo, Vinci, Doriana, Schingaro, Emanuela|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8twh
title: CCDC 2302397: Experimental Crystal Structure Determination

description: Related Article: Helena Butkiewicz, Oksana Danylyuk|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8vbz
title: CCDC 2302411: Experimental Crystal Structure Determination

description: Related Article: Lin linliwu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8vc0
title: CCDC 2302412: Experimental Crystal Structure Determination

description: Related Article: Lin linliwu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8vd1
title: CCDC 2302413: Experimental Crystal Structure Determination

description: Related Article: Lin linliwu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8wth
title: CCDC 2302457: Experimental Crystal Structure Determination

description: Related Article: Jianhong Huang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8xvk
title: CCDC 2302489: Experimental Crystal Structure Determination

description: Related Article: wei liyuan|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8yh7
title: CCDC 2302509: Experimental Crystal Structure Determination

description: Related Article: Merzweiler, Kurt, Liebing, Phil|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8ypf
title: CCDC 2302515: Experimental Crystal Structure Determination

description: Related Article: Nathan J. Weeks, Scott T. Iacono|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h900v
title: CCDC 2302556: Experimental Crystal Structure Determination

description: Related Article: Yuji Nishii|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h96jk
title: CCDC 2302758: Experimental Crystal Structure Determination

description: Related Article: Priyotosh Das, Debangshu Ghosh, and Santanu Mukherjee|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h99ns
title: CCDC 2302855: Experimental Crystal Structure Determination

description: Related Article: Nicolas Kratena, Daniel Matulka, Berthold Stoeger|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.14768/20181024001.1
title: Multifractal models of telluric planets / exoplanets topography - v1

description: We propose here a general statistical theory to describe and generate realistic synthetic topographies of rocky exoplanetary bodies. In the solar system, we have examined the best-known bodies: the Earth, Moon, Mars and Mercury. It turns out that despite their differences, they all can be described by multifractral statistics, although with different parameters. Assuming that this property is universal, we propose here a model to simulate 2D spherical random field that mimics a rocky planetary body in a stellar system.
DOI: 10.5880/tr32db.32
title: Land use classification of 2018 for the CRC/TR32 measurement region Selhausen/Merken/Merzenhausen, preliminary results

description: This data set contains the preliminary land use classification of 2018 for the measurement region Selhausen/Merken/Merzenhausen of the study area of the CRC/Transregio 32: "Patterns in Soil-Vegetation-Atmosphere Systems: monitoring, modelling and data assimilation", which corresponds to the catchment of the river Rur. The study area is mainly situated in the western part of North Rhine-Westphalia (Germany) and parts of the Netherlands and Belgium. The classification is provided in GeoTIFF and in ASCII format. Spatial resolution: 15 m; projection: WGS84, UTM Zone 32N.
DOI: 10.5285/c563569e-0875-404b-acb2-cd5f9e5c4706
title: Multi-azimuth long-offset seismic gathers from Korff Ice Rise, West Antarctica, 2015

description: In 2015 long offset seismic gathers were collected at Korff Ice Rise, West Antarctica, with the aim of studying fabric within the ice column and ice bed properties. Data were collected at sites within 700m of one another along the axis of the ice divide. The seismic gathers were collected at 60 deg intervals to study azimuthal variation in seismic velocity and shear wave splitting. This study is part of the British Antarctic Survey programme Polar Science for Planet Earth. All data were collected with the support of the British Antarctic Survey.
description: The three gathers were oriented at 60 deg to one another to constrain azimuthal variation in seismic properties centred on a single site on the axis of the divide. Each gather used four shot points, each with 48 receivers at 10m intervals. The offset to the first receiver ranged from 30 to 1440m, producing traces out to 1940m offset, or incidence angle at the bed up to 58 deg. To achieve three-component recordings, the receivers were oriented to measure either vertical, radial or transverse motion. The CMP gather along the divide axis (K01; true bearing 043 deg) was shot twice: once with all sensors orientated vertically using 150g of high explosive, and once with horizontal sensors alternating radial and transverse orientation, using 600g shots; the latter resulting in an effective 20m receiver interval for the horizontal components. The oblique CMP gathers (K02: 60 deg east of K01; K03: 60 deg west of K01) were shot once only, each with 600g shots and alternating vertical, radial and transverse receivers, resulting in an effective 30m receiver interval for all three components. The larger shot is required to generate sufficient S-wave energy at the source. Although an explosive source in a homogeneous isotropic medium will theoretically not generate S-wave energy, the non-uniform nature of the shallow firn results in significant S-wave energy. The acquisition geometry results in a mid-point basal reflection ellipse with a length of 235m.
DOI: 10.26036/cnphis0000097
title: An integrated catalog of reference genes in the human gut microbiome

description: The gut microbiota is key to human health and disease. Metagenome-wide association studies (MGWAS) that search for disease markers in the gut microbiota, species identification according to metagenomic linkage groups (MLGs) or metagenomic clusters (MGCs), and metatranscriptomics or metaproteomics studies, all depend on a reference gene catalog, which has only been available for individual cohorts or based on reference genome or protein sequences. Here we report a high-quality integrated reference gene catalog consisting 9,879,896 genes, using 6.4 TB sequencing data derived from 1267 published and unpublished human gut metagenomes from three continents. The catalog represents a comprehensive collection of common and rare species, genes and genetic variants, and suggests individuality in the human gut microbiota. Analyses of a group of Chinese and Danish samples using the catalog revealed country-specific signatures in nutrient and xenobiotic metabolism. Our data suggest that interventions on nutrition, pollution and epidemiology should be tailored to the gut microbiota of a given population or even personalized for an individual.
DOI: 10.26036/cnphis0000120
title: Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

description: 50 Tibetan exome captured by Nimblegen array.
DOI: 10.26036/cnphis0000147
title: China_type_2_diebetes_family

description: We sequenced the WGS/WGBS/Transcriptome/mircoRNA of a type 2 diabetes family
DOI: 10.26036/cnphis0000162
title: HPV capture data Targeted Locus (Loci)

description: We sequenced the HPV capture DNA of 9 patients of breast cancer
DOI: 10.26036/cnphis0000170
title: Whole genome resequencing of four individuals

description: We sequenced the WGS of of four individuals
DOI: 10.26036/cnphis0000168
title: Spontaneous abortion reason tracking based on low coverage sequencing

description: Performance Comparison Between Rapid Sequence Platforms in Ultra-low Coverage Sequencing
DOI: 10.26036/cnphis0000171
title: HBV exome sequencing phase 2

description: We sequenced the exome of 49 patients and 50 controls
DOI: 10.26036/cnphis0000177
title: Symbiodinium kawagutii genome sequencing

description: Whole Genome sequencing of Symbiodinium kawagutii genome
DOI: 10.26036/cnphis0000184
title: Pseudosciaena crocea WGS

description: We sequenced the WGS of Pseudosciaena crocea
DOI: 10.26036/cnphis0000190
title: Mitochondrial analysis of metagenomes

description: We sequenced total genomic DNA of 49 bulk samples
DOI: 10.26036/cnphis0000207
title: HPV Integration Data

description: We sequenced the whole genome DNA of 4 samples of cervical cancer
DOI: 10.26036/cnphis0000211
title: Transcriptome sequencing of Jatropha curcas L.

description: We sequenced the RNA of Jatropha curcas L.
DOI: 10.26036/cnphis0000212
title: Transcriptome sequencing of Jatropha integerrima

description: We sequenced the RNA of Jatropha integerrima
DOI: 10.26036/cnphis0000230
title: Aedes albopictus transcriptome sequencing

description: Transcriptome analysis of Aedes albopictus
DOI: 10.26036/cnphis0000233
title: Evaluation of Exome Capture Platforms

description: Full comparision of three commercial exome capture platforms
DOI: 10.26036/cnphis0000242
title: Vigna angularis WGS

description: We did whole genome sequencing of Vigna angularis.
DOI: 10.26036/cnphis0000243
title: Vigna angularis RNA

description: We did the transcriptomic sequencing of Vigna angularis.
DOI: 10.26036/cnphis0000267
title: Mito Capture

description: Mitochondrial capture analysis of polled DNA
DOI: 10.26036/cnphis0000270
title: Pennisetum glaucum WGS

description: Whole genome sequencing of Pennisetum glaucum
DOI: 10.26036/cnphis0000291
title: Genome sequence and analysis of the tuber crop potato

description: Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop.
DOI: 10.26036/cnphis0000074
title: Exome sequencing of (BEB) Bengali in Bangladesh HapMap population

description: -
DOI: 10.26036/cnphis0000169
title: Re-sequencing of synthetic yeast genome IXR and VIL

description: Synthetic chromosome rearrangement and modification by loxP-mediated evolution (SCRaMbLE) generates combinatorial genomic diversity: recombinase sites are encoded in a synthetic chromosome, and tightly controlled induction of a modified recombinase creates a population of targeted structural variations. We used this method to scramble large regions of two yeast chromosomes: yeast synthetic chromosome arm synIXR, with 43 recombinase target sites, and synthetic region synVIL, with 5 recombinase sites. Deconvolving the scrambled genomes provides insight into genome structure and function and reveals whether off-target activity or ectopic recombinations interfere with the synthetic design
DOI: 10.26036/cnphis0000290
title: Sequencing 6 primate exomes captured by human based exome chip

description: Solexa sequencing of 6 primate exomes
DOI: 10.26036/cnphis0000315
title: Frequent mutations of ubiquitin mediated proteolysis pathway in clear cell renal cell carcinoma

description: We sequenced the exomes of ten ccRCC patients and screened all the somatically mutated genes in a prevalence set of 88 additional ccRCCs.
DOI: 10.26036/cnphis0000336
title: Sequence exons of 193 genes using Hiseq 2000

description: We sequenced exons of 193 genes using targeted next generation sequencing in order to search for variants in GeneticDisease genes.
DOI: 10.26036/cnphis0000341
title: Non-invasive Fetal Trisomy Test (NIFTY): An Advanced Noninvasive Prenatal Diagnosis Methodology for Fetal Autosomal and Heterosomal Aneuploidies

description: For the accurate noninvasive detection of fetal aneuploidies,we developed an advanced methodology based on massive paralell sequencing.903 cases were sequenced and we demonstrate the new methodology is applicable for both autosomal and heterosomal aneuploidies with high accuracy.
DOI: 10.26036/cnphis0000350
title: De novo assembly transcriptome in chili pepper

description: To understand more knowledge in biosynthesis of capsaicinoids, we performed RNA-seq of the placenta and pericarp of pungent pepper (Capsicum frutescens L.) using the de novo assembly. We obtained a total 75,536 high-quality transcripts using Trinity software. About 71.57% of unigenes showed similarity to the public protein sequences (60.55%) and genome of potato and tomato (65.70%). Our result predicted 3 new structure genes, which filled gaps of the pathway of capsaicinoid biosynthesis and revealed new candidate genes involve in capsaicinoid biosynthesis based on KEGG analysis. A significant number of SSR and SNPs markers were predicted in Capsicum frutescens sequences, which will be helpful to the identification of polymorphisms within chili pepper populations. These data will provide new clue to the pathway of capsaicinoid biosynthesis and biology of chili pepper. In addition, our strategy of de novo assembly transcriptome can helpful to other similar studies.
DOI: 10.26036/cnphis0000363
title: Single-cell Exome Sequencing and Novel Mutation Characteristics of Kidney Cancer

description: Clear cell renal cell carcinoma (ccRCC) is the most common kidney cancer and has very few mutations that are shared between different patients. To better understand the intratumoral genetics underlying mutations of ccRCC, we carried out single-cell exome sequencing on a ccRCC tumor and its adjacent kidney tissue. Our data indicated this tumor was unlikely to have resulted from mutations in VHL and PBRM1. Quantitative population genetic analysis indicated that the tumor did not contain any significant clonal subpopulations and also showed that mutations that had different allele frequencies within the population also had different mutation spectrums. Analyses of these data allowed us delineate a detailed intratumoral genetic landscape at a single-cell level. Our pilot study demonstrates ccRCC may be more genetically complex than previously thought and provides novel information that can lead to new ways to investigate individual tumors with the aim of developing more effective cellular targeted therapies.
DOI: 10.26036/cnphis0000382
title: RNA-Seq of two bladder cancer cell lines

description: RNA-Seq data of two bladder cancer cell lines--5637 and T24. The data can be used to do some analysis , such as expression, alternative splicing, gene fusion.
DOI: 10.26036/cnphis0000115
title: Resequencing data from Bombyx mandarina Japan

description: We identified 347 single nucleotide polymorphisms (SNPs) in the mt genome, but found no past recombination event to have occurred in the silkworm progenitor. A phylogeny inferred from these whole genome SNPs resulted in a well-classified tree, confirming that the domesticated silkworm, Bombyx mori, most recently diverged from the Chinese wild silkworm, rather than from the Japanese wild silkworm. We showed that the population sizes of the domesticated and Chinese wild silkworms both experience neither expansion nor contraction. We also discovered that one mt gene, named cytochrome b, shows a strong signal of positive selection in the domesticated clade. This gene is related to energy metabolism, and may have played an important role during silkworm domestication.
DOI: 10.26036/cnphis0000122
title: Resequencing of 50 rice individuals

description: Rice is a staple crop that has undergone substantial phenotypic and physiological changes during domestication. Here we resequenced the genomes of 40 cultivated accessions selected from the major groups of rice and 10 accessions of their wild progenitors (Oryza rufipogon and Oryza nivara) to &gt;15 * raw data coverage. We investigated genome-wide variation patterns in rice and obtained 6.5 million high-quality single nucleotide polymorphisms (SNPs) after excluding sites with missing data in any accession. Using these population SNP data, we identified thousands of genes with significantly lower diversity in cultivated but not wild rice, which represent candidate regions selected during domestication. Some of these variants are associated with important biological features, whereas others have yet to be functionally characterized. The molecular markers we have identified should be valuable for breeding and for identifying agronomically important genes in rice.
DOI: 10.26036/cnphis0000222
title: Aedes albopictus Genome sequencing

description: Aedes albopictus Genome sequencing
DOI: 10.26036/cnphis0000375
title: Genome sequencing of Sus scrofa Wuzhishan breed

description: Whole genomic sequence and analysis of a male Wuzhishan pig. Wuzhishan is an inbred line preserved in the National Center for Genetic Resources Preservation for Chinese experimental min-pigs, located in Nankou town, Changping District of China
DOI: 10.26036/cnphis0000383
title: Bubalus bubalis WGS

description: We did whole genome sequencing of Bubalus bubalis.
DOI: 10.26036/cnphis0000399
title: Neophocaena asiaeorientalis Raw sequence reads

description: Transcriptome study of Neophocaena asiaeorientalis
DOI: 10.26036/cnphis0000473
title: CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood

description: -
DOI: 10.26036/cnphis0000483
title: Vitis vinifera Transcriptome or Gene expression

description: Transcriptome sequencing and analysis of 15 grape species.
DOI: 10.26036/cnphis0000626
title: Whole genome sequencing of an extended Western chimpanzee pedigree

description: Whole-genome sequencing, from blood samples, of nine members of a three-generation pedigree of Western chimpanzees, Pan troglodytes verus. A central trio was sequenced at high depth (average 51x; individuals A, B, F), while other family members were sequenced to an average of 27x, using Illumina HiSeq 2000 instruments with 100 bp paired-end sequencing with a 450 bp insert size. Data information: Sample names are of the form /panPedigree_[ABCDEFGHI]?/. Family structure: Founders: A, B, C Progeny of A+B (F1): D, E, F Progeny of C+F (F2): G, H, I Gender: Female: B, F Male: A, C, D, E, G, H, I.
DOI: 10.26036/cnphis0000733
title: Elephas maximus Genome sequencing

description: None