cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26322586.v2
title: The genomic annotation-related data for <i>Katsuwonus pelamis</i>.

description: This data comes from Marine Ecological Genomics Lab, School of Marine Sciences, Sun Yat-Sen University, China.In this study, we assembled the chromosome-scale genome sequence of <i>K</i><i>.</i><i> pelamis</i> utilizing a combination of PacBio long reads and Hi-C technology. This assembly comprises 24 pseudo-chromosomes, yielding a genome size of 827.9 Mb with a scaffold N50 length of 32 Mb, indicative of a highly contiguous assembly. This folder contains files related to genome annotation.
DOI: 10.6084/m9.figshare.27909756.v1
title: Postural muscle activity during voluntary shoulder flexion.

description: This study had two aims: 1) to compare the EMG activity of trunk muscles during unilateral and bilateral shoulder flexion in different conditions: low speed, fast speed, dumbbell resistance, elastic resistance; 2) to analyze the postural activity in these experimental conditions using two EMG processing methods: integration normalized by baseline activity and RMS normalized by MVIC.
DOI: 10.6084/m9.figshare.28173011.v1
title: Sediment load

description: sediment load raw data
DOI: 10.17632/5xss424m4p
title: Technical and economic data for energy market and capacity payment optimisation in the Dominican Republic's power market

description: A dataset that can be used in an optimisation model of the energy market and the capacity payment in the power market of the Dominican Republic. It can be used to determine the real contribution of variable renewable energy (VRE) to the security of supply, and develop methodologies to calculate de capacity value/credit of VRE. The file in the repository is an Excel workbook called "Dominican Republic power market data".
DOI: 10.6084/m9.figshare.14265188.v1
title: Protecting local water quality has global benefits - calculations illustrated

description: This is a spreadsheet showing the calculations we have made for a publication entitled "Protecting local water quality has global benefits" to published in Nature Communications. The spreadsheet gives the major equations and illustrates the way in which all calculations were performed. The analysis uses integrated assessment models to calculate the present values of methane emissions due to lake eutrophication.
DOI: 10.6084/m9.figshare.23962131.v1
title: <b>Accelerated organic matter decomposition in thermokarst lakes upon carbon and phosphorus inputs</b>

description: 青藏高原热喀斯特湖泊湖水中溶解性有机质矿化的启动和养分效应及其预测因子和微生物群落组成的数据<br><br>
DOI: 10.6084/m9.figshare.24711996.v1
title: Table 4. Summary of (PLS-SEM) path analysis and hypothesis testing.docx

description: Three hypotheses were rejected because their individual t-statistic values were 1.96 or less, as shown by the specific t-statistic values in Table 4. The second, third, and fifth hypotheses are connected to these theories.
DOI: 10.6084/m9.figshare.29104244.v1
title: Earnings management dataset

description: This paper empirically examines whether earnings management practices affect share performance of the listed firms in East African security exchanges.The sample of the study includes a panel data comprising of sixty non-financial and thirty-eight financial firms listed in four East African countries covering a period of 2016 to 2023. The Generalized Method of Moments model (GMM), was applied to estimate the econometric models.
DOI: 10.15131/shef.data.5863422.v3
title: Data for paper "Investigation of the dependence of joint contact forces on musculotendon parameters using a codified workflow for image-based modelling"

description: This folder contains data and material used in the paper "Investigation of the dependence of joint contact forces on musculotendon parameters using a codified workflow for image-based modelling".A complementary figshare is available with Matlab code.<br> The content of this figshare is:1. PDF document with guidelines: "Step-by-step_modelling_guide.pdf" contains step-by-step operations for building subject-specific anatomical model of the lower-limb from gait data and MR Images.<br><br>2. Modelling_materiala. Modelling Folder Structure: this folder structure helps in the organisation of the modelling data and files and is required to correctly use the Matlab scripts. Reference to the structure and how to populate it can be find in in the "Step-by-step_modelling_guide.pdf".<br>b. NMSBuilder model structure template: this template is used in NMSBuilder to build the subject-specific anatomical model of the lower-limb according to the pipeline described in "Step-by-step_modelling_guide.pdf".c. NMSBuilder dictionaries: these dictionaries can be imported in NMSBuilder to perform virtual palpation of anatomical landmarks and visible gait markers. A description of the anatomical landmarks is also available as excel file.d. Muscle attachments atlas: this in contained in the folder "NMSBuilder_gait2392_muscle_attachments (mm)" where muscle attachments and their 3d coordinates (derived from the Opensim model gait2392) are listed within the respective body segment as txt files.<br>3. Simulations results (see README.txt): this folder contains the results published in the paper. It is organised in subfolders depending on the different approach to calculate musculotendon parameters, with the same identifiers as in the paper. For each approach, twenty-two folders contain each patient's OpenSim model (vtp files for geometries are not included due to sharing policies) and a Mat_summary with the results of the dynamic simulations run in OpenSim (as .mat files).
DOI: 10.6084/m9.figshare.28229113.v1
title: RCFormer: radiation correction method for degraded multispectral UAV images using vision transformers

description: In modern remote sensing technology, Unmanned Aerial Vehicles (UAVs) have become crucial data acquisition platforms. However, low-altitude remote sensing images from UAVs are often affected by atmospheric scattering and absorption, particularly under conditions like haze, which severely degrade image quality. Traditional radiation correction methods cannot accurately capture the true reflectance of ground objects under these conditions. This paper introduces RCFormer, an innovative Transformer-based network architecture. It combines the self-attention mechanism of Swin Transformer with a novel network structural design, especially incorporating parallel convolutional structures to enhance the extraction capability of surface features. Additionally, with the integration of atmospheric characteristic refinement module (ACRM) and Multi-scale Feature Fusion Gate (MFFG), the proposed RCFormer not only captures atmospheric information from deep features but also effectively fuses features across different scales, thereby improving the accuracy, transferability and robustness of the radiation correction model. Finally, quantitative and qualitative evaluations using real-world data demonstrate that RCFormer outperforms other dehazing networks in both degraded and haze-free images while also offering good efficiency and ease of operation.
DOI: 10.6084/m9.figshare.7699451.v1
title: Synthesis, structure, and property of a cd(II) 3D coordinated polymer with 2-fold parallel interpenetrated network based on 5-(4-hydroxypyridinium-1-yl) isophthalic acid ligand

description: A Cd(II) coordination polymer, {[Cd(L)(1,4-bbi)<sub>0.5</sub>(H<sub>2</sub>O)]·H<sub>2</sub>O}<i><sub>n</sub></i> (<b>1</b>), where H<sub>2</sub>L = 5-(4-hydroxypyridinium-1-ylmethyl)isophthalic acid, 1,4-bbi = 1,1′-(1,4-butanediyl)bis(imidazole), has been hydrothermally synthesized and structurally characterized by X-ray diffraction analyses and further characterized by infrared spectra (IR), elemental analyses, PXRD, and thermogravimetric (TG) analyses. Compound <b>1</b> reveals a 2-fold interpenetrating 3D framework with (4·8<sup>2</sup>·10<sup>3</sup>) (4·8<sup>2</sup>) topology, and the Cd center has a distorted octahedral environment. Meanwhile, the luminescent property of the title compound (<b>1</b>) has also been investigated in detail.
DOI: 10.6084/m9.figshare.4326440.v1
title: Supplementary Material for: Classification of Tattoo Complications in a Hospital Material of 493 Adverse Events

description: <b><i>Background/Aims:</i></b> Tattooing is a global trend. Clinical knowledge of complications is based on case reports collected over a century. Larger cohorts reflecting complications associated with contemporary trends are lacking. <b><i>Methods:</i></b> The study was a retrospective review of a consecutive cohort of patients with tattoo complications diagnosed in the “Tattoo Clinic“ of Bispebjerg University Hospital in Copenhagen, Denmark, from 2008 to 2015, based on patient history and systematic clinical examination. <b><i>Results:</i></b> A total of 493 tattoo complications in 405 patients were studied. Overall, 184 (37%) presented allergic reactions with plaque elevation in 32.2%, excessive hyperkeratosis in 3.7%, and ulceration in 1.4%, predominantly observed in red tattoos and nuances of red; 66 (13%) presented papulo-nodular reactions, mainly observed in black tattoos (considered non-allergic) and due to pigment agglomeration; 53 (11%) had bacterial infections; 46 (9%) were psycho-social complications; 144 (30%) belonged to several specific diagnostic entities, including photosensitivity, pain syndrome, and lymphopathy. We found no cases of cutaneous or other malignancies. Sarcoidosis was primarily seen in black tattoos and was a common associated disease, found in 23 reactions (5%), compared to the background population. <b><i>Conclusion:</i></b> The study introduces a new concept of classification of tattoo complications based on simple tools such as patient history and objective findings supplemented with histology. The study reflects complications originating from presently used tattoo inks, often with organic pigments. The introduced classification has been submitted to the World Health Organisation (WHO) as a proposal to the 11th revision of the International Classification of Diseases.
DOI: 10.6084/m9.figshare.6960149.v1
title: Oil-Radiograms-for-3D

description: This stack of 2D radiograms was collected at the end of the oil injection. For reconstruction use the Flat field and Dark current images provided. Image Dimensions: 1024×1024×2001 Image Type: 16 bit - unsigned Mode = cone beam Last angle = 360° Pixel size = 0.2 mm Centre of rotation = 512.281 Source object distance = 37 mm Source detector distance = 549.5 mm Direction of rotation = clockwise Vertical centre = 496 Horizontal centre = 512 Tilt = 0° Skew = 0.5° Voxel size = 0.013239 mm
DOI: 10.6084/m9.figshare.6991289.v1
title: Parasites in space and time: a case study of haemosporidian spatiotemporal prevalence in urban birds

description: Prevalence responses to anthropic factors differ across hosts and parasite species. We here analyzed the spatiotemporal variation of avian haemosporidian prevalence in bird assemblages of the Mooswald forest (i.e., urban greenspace; Freiburg, Germany), in response to local environmental features (e.g., water sources, human presence [visited]/absence [unvisited]) and bird-level traits (e.g., body condition, age, sex) in two years. We used a nested PCR protocol (mtDNA cyt b gene) and microscopy to determine haemosporidian infections. Prevalence was analyzed using a general linear multi-model (glmulti) approach with Akaike information criterion (AICc), with subsequent model inferences using a GLMM on the best-selected model with species as a random factor. Analyses were conducted for the main understory bird species (Blackcap –<i>Sylvia atricapilla</i>, Chaffinch – <i>Coereba flaveola</i>, Great Tit – <i>Parus major</i>, Blue Tit – <i>Cyanestes caeruleus</i>, European Robin – <i>Erithacus rubecula</i>, Blackbird – <i>Turdus merula</i>, Song Thrush – <i>Turdus philomelos</i>). We further conducted spatial autocorrelation analyses for all haemosporidian infections, and classification and regression trees (CARTs) for focal species. We analyzed a total of 544 samples of 7 bird species. In 2011 prevalence for <i>Haemoproteus</i>/<i>Plasmodium</i>was 25.8% and 11.7% for <i>Leucocytozoon</i>. In 2013 prevalence for <i>Haemoproteus</i>/<i>Plasmodium</i>was 26.5% and 35.5% for <i>Leucocytozoon</i>. Haemosporidian prevalence was significantly different between some focal species. There was a negative association between distance to the nearest water source and prevalence in the year 2011, and the opposite pattern for the year 2013. However, when analyzed for the six focal species separately, such relationship could change from a negative to a positive one, or show no relationship at all. For <i>Leucocytozoon</i>there was higher prevalence in the visited section of the forest. We did not find spatial autocorrelation for prevalence across the study site, but there were statistically significant local spatial clusters in the visited section. Although there were similar responses of prevalence to some factors, infection patterns were generally species specific. Thus, prevalence is a labile epidemiological parameter, varying spatiotemporally in an idiosyncratic way.
DOI: 10.25375/uct.22344268.v1
title: Attributing the driving mechanisms of the 2015-2017 drought in the Western Cape (South Africa) using self-organising maps

description: The data described here are from Odoulami et al. (2023): Odoulami, R.C., Wolski, P., and New, M. (2023). Attributing the driving mechanisms of the 2015-2017 drought in the Western Cape (South Africa) using self-organising maps. Environmental Research Letters. Here is the abstract: <br> <strong>Abstract</strong> The Southwestern Cape (SWC) region in South Africa experienced a severe rainfall deficit between 2015-2017. The resulting drought caused the City of Cape Town to almost run out of water during the summer of 2017-2018. Using the self-organising maps approach, we identify and classify the synoptic circulation states over Southern Africa known to influence the local climate in the SWC into three groups (dry, intermediate, and wet circulation types) using large ensembles of climate model simulations with anthropogenic forcing and natural forcing. We then assessed the influence of anthropogenic climate change on the likelihood of these circulation types and associated rainfall amounts over the SWC during the drought. Our findings suggest that during the drought, the frequency of dry (wet) circulation types increases (decreases) across all models under anthropogenic forcing relative to the natural forcing. While there was no clear direction in the associated rainfall change in the dry circulation types, rainfall decreased across most models in wet nodes. All models agree that anthropogenic climate change has increased the likelihood of dry circulation types (median probability ratio (PR): 0.93 to 0.96) and decreased that of wet circulation types (median PR: 1.01 and 1.12), indicating a shift towards lesser (more) wet (dry) synoptic circulation states and associated rainfall during the drought. The long-term climatology also depicts similar patterns indicating the drought may result from long-term changes in the frequency of wet circulations and their associated rainfall. This study further explains the anthropogenic influence on the dynamic (synoptic circulation states) and thermodynamic (rainfall) factors that influenced the SWC 2015-2017 drought. <br> <br> <br> The Self-Organising Maps (SOMs) datasets were generated by applying the Laboratory of Computer and Information Science at Helsinki University of Technology’s SOM package (see Kohonen et al., 1996 for more details) to CMIP6 and ERA-Interim daily geopotential height data. The associated characteristics of the SOMs (node frequency and rainfall amount) were also generated. All data are in netCDF format. <br> The dataset contains three folders: (i) "1-SOMsGeneratedData" This folder contains the SOMs-generated outputs for each model ensemble and ERA-Interim. (ii) "2-SOMsNodes_NodesFrequency" This folder contains the frequency of each SOMs node for each model ensemble and ERA-Interim. (iii) "3-SOMsNodes_NodesRain" This folder contains rainfall associated with each SOMs node for each model ensemble and ERA-Interim.
DOI: 10.6084/m9.figshare.12149598.v3
title: Autoantibody dataset.xlsx

description: Autoantibody data set used in the project titled "Predicting response and toxicity to PD-1 inhibition using serum autoantibodies identified from immuno-mass spectrometry"
DOI: 10.6084/m9.figshare.27304536.v1
title: Statistical code (.rmd files) for "Genetic diversity and population structure of parasite infrapopulations within and across hosts for two trophically transmitted trematode parasites" submitted to PeerJ October 2024

description: <b>R markdown files:</b><b>Abundance_Diversity_Models_Peer</b><b>J</b><b>.</b><b>rmd</b>. This file contains the statistical code for analysis of the parasite infection abundance data and the genetic diversity data.<b>Haplotypes_ShannonDiversity_PeerJ</b><b>.</b><b>rmd</b>. This file contains the statistical code for calculating and analysis of the parasite haplotype frequency, diversity, and Shannon-Weiner diversity of parasite assemblages. <b>Rarefaction_PeerJ</b><b>.</b><b>rmd</b>. This file contains the statistical code for construction of haplotype rarefaction curves using data obtained from EstimateS rarefaction analysis.
DOI: 10.6084/m9.figshare.27854061.v1
title: Prunus_mahaleb.anno.gff3

description: <i>Prunus mahaleb</i> genome annotation files, including gene structure annotation and repetitive sequence annotation.
DOI: 10.6084/m9.figshare.28633796.v1
title: TDL values for all targets

description: A common request is for a listing of TDLs (Target Development Levels) for all targets in Pharos. Here's a CSV with TDLs and some other top level data for targets.
DOI: 10.17632/433khxy3j3
title: Data for "Finite-size scaling for permeability of anisotropic and heterogeneous random fracture networks"

description: Data for "Finite-size scaling for permeability of anisotropic and heterogeneous random fracture networks"
DOI: 10.17632/p63m3jrx9n
title: HVAC system - Attack-detection

description: The dataset can be used to study the cybersecurity aspect of the HVAC system by evaluating the different attack detection and mitigation strategies. The dataset was collected from a simulation model of a 3-floor, 12-zone HVAC system for cooling using the Transient System Simulation Tool (TRNSYS), which is a graphical software environment for simulating a dynamical system. It consists of three logs: Dataset log 1 contains normal operational data collected for four months, Dataset log 2 represents normal operational data collected for 20 days. Dataset log 3 consists of the normal and attack data of 16 different attacks. It consists of 65 features: the hour of the year, the hour of the day, the temperature sensor measurements, the control signals, the control system's setpoints, the zones' thermal comfort indices, and the total estimated power usage of the HVAC system. Four files are provided as supplementary materials for training machine learning-based detection models using the Isolation Forest algorithm [1]. The details of the supplementary codes are as follows: File "HVAC - IF Training.ipynb" is for developing an attack detection model using Isolation Forest on the raw data, File "HVAC - PCA-IF Training.ipynb" is for developing an attack detection model using Isolation Forest on the data features extracted using Principal Component Analysis (PCA), File "HVAC - 1D CNN Training.ipynb" is for developing a feature extraction model using 1D Convolutional Neural Network (1D CNN), and File "HVAC - 1D CNN-IF Training.ipynb" is for developing an attack detection model using Isolation Forest on the data features extracted using the 1D CNN model. For more information about the dataset refer to the following publications: [1] Elnour, M., Meskin, N., Khan, K., & Jain, R. (2021). Application of data-driven attack detection framework for secure operation in smart buildings. Sustainable Cities and Society, 69, 102816. https://doi.org/10.1016/j.scs.2021.102816 [2] Elnour, M., Meskin, N., Khan, K., & Jain, R. (2021). HVAC System Attack Detection Dataset. Data in Brief, 107166. https://doi.org/10.1016/j.dib.2021.107166 * This dataset was supported by the Qatar National Research Fund (a member of the Qatar Foundation) under NPRP Grants number 10-0206-170360 and the Open Access funding was provided by the Qatar National Library
DOI: 10.6084/m9.figshare.12830495.v1
title: Data sets for experiments on PON-/- mice

description: Two data sets contain the scores for testing reflexes in mouse pups that had been exposed on gestational days 12-15 to chlorpyrifos or (control) oil.<br>Genotypes: PON1 knockout vs PON1 wild typeTreatments: Oil (vehicle), chlorpyrifos 0.5 mg/kgReflex scores: Right reflex (seconds)Negative GeotaxisCliff Avoidance <br>1 data set contains the social preference test score.Ratio of time spent on in the zone containing the mouse vs. other zonesCodes : Social - proximal - SP Social distant - SD Object- proximal -OP Object -Distant - OD<br>SCPP and FCPP data sets refer to change in preference for the initially non-preferred side after conditioning to a social stimulus (SCPP) or food (FCPP)<br>
DOI: 10.6084/m9.figshare.5127280.v1
title: Supplementary Material for: Dab2IP Regulates Neuronal Positioning, Rap1 Activity and Integrin Signaling in the Developing Cortex

description: Dab2IP (DOC-2/DAB2 interacting protein) is a GTPase-activating protein which is involved in various aspects of brain development in addition to its roles in tumor formation and apoptosis in other systems. In this study, we carefully examined the expression profile of Dab2IP and investigated its physiological role during brain development using a Dab2IP-knockdown (KD) mouse model created by retroviral insertion of a LacZ-encoding gene-trapping cassette. LacZ staining revealed that Dab2IP is expressed in the ventricular zone as well as the cortical plate and the intermediate zone. Immunohistochemical analysis showed that Dab2IP protein is localized in the leading process and proximal cytoplasmic regions of migrating neurons in the intermediate zone. Bromodeoxyuridine birth dating experiments in combination with immunohistochemical analysis using layer-specific markers showed that Dab2IP is important for proper positioning of a subset of layer II-IV neurons in the developing cortex. Notably, neuronal migration was not completely disrupted in the cerebral cortex of Dab2IP-KD mice and disruption of migration was not strictly layer specific. Previously, we found that Dab2IP regulates multipolar transition in cortical neurons. Others have shown that Rap1 regulates the transition from multipolar to bipolar morphology in migrating postmitotic neurons through N-cadherin signaling and somal translocation in the superficial layer of the cortical plate through integrin signaling. Therefore, we examined whether Rap1 and integrin signaling were affected in Dab2IP-KD brains. We found that Dab2IP-KD resulted in higher levels of activated Rap1 and integrin in the developing cortex. Taken together, our results suggest that Dab2IP plays an important role in the migration and positioning of a subpopulation of later-born (layers II-IV) neurons, likely through the regulation of Rap1 and integrin signaling.
DOI: 10.17632/ydpzspfnpr
title: Data for: From a F-rich granite to a NYF pegmatite: Magmatic-Hydrothermal fluid evolution of the Kymi topaz granite stock, SE Finland

description: Individual fluid inclusion LA-ICP-MS data from the Kymi stock
DOI: 10.6084/m9.figshare.12928832.v1
title: Dataset from Analytical and clinical performances of five immunoassays for the detection of SARS-CoV-2 antibodies in comparison with neutralization activity

description: Dataset including data from 5 different serological assay and neutralization activity<br>