cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7460287
title: H4K20me3 controls Ash1-mediated H3K36me3 and transcriptional silencing in facultative heterochromatin

description: Normalized ChIP-seq datasets for visualization in IGV. The tracks contain means of pooled replicate datasets. ChIP-seq data were quality-filtered and adapters removed with trimmomatic v.0.39 (Bolger et al., 2014). Mapping was performed with bowtie2 v.2.4.4 (Langmead and Salzberg, 2012), and sorting and indexing with samtools v.1.9 (Li, 2011). Normalized coverage bigwig files and heatmaps were created with deeptools v.3.5.1 (Ramírez et al., 2016). Wiggletools v.1.2 and the UCSC Genome Browser tools were used to calculate means for replicates and converting wig to bigwig files. Reference genome file is modified from Goodwin et al., 2011. Chromosome 18 was removed from the genome as our reference isolate is missing chromosome 18. Gene annotation file was obtained from FungiDB (release 53) and is based on the annotation published by Grandaubert et al., 2015.
description: {"references": ["Goodwin SB, Ben M'Barek S, Dhillon B, Wittenberg AHJ, Crane CF, et al. (2011) Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis. PLOS Genetics 7(6): e1002070. https://doi.org/10.1371/journal.pgen.1002070", "Basenko, Evelina Y., Jane A. Pulman, Achchuthan Shanmugasundram, Omar S. Harb, Kathryn Crouch, David Starns, Susanne Warrenfeltz, Cristina Aurrecoechea, Christian J. Stoeckert Jr., Jessica C. Kissinger, David S. Roos, and Christiane Hertz-Fowler. 2018. \"FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes\" Journal of Fungi 4, no. 1: 39. https://doi.org/10.3390/jof4010039", "Anthony M. Bolger, Marc Lohse, Bjoern Usadel, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, Volume 30, Issue 15, 1 August 2014, Pages 2114\u20132120, https://doi.org/10.1093/bioinformatics/btu170", "Langmead, B., Salzberg, S. Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357\u2013359 (2012). https://doi.org/10.1038/nmeth.1923", "Heng Li, A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data, Bioinformatics, Volume 27, Issue 21, 1 November 2011, Pages 2987\u20132993, https://doi.org/10.1093/bioinformatics/btr509", "Fidel Ram\u00edrez, Devon P Ryan, Bj\u00f6rn Gr\u00fcning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike D\u00fcndar, Thomas Manke, deepTools2: a next generation web server for deep-sequencing data analysis, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W160\u2013W165, https://doi.org/10.1093/nar/gkw257", "Jonathan Grandaubert, Amitava Bhattacharyya, Eva H Stukenbrock, RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements, G3 Genes|Genomes|Genetics, Volume 5, Issue 7, 1 July 2015, Pages 1323\u20131333, https://doi.org/10.1534/g3.115.017731"]}
DOI: 10.5281/zenodo.7768593
title: H4K20me3 controls Ash1-mediated H3K36me3 and transcriptional silencing in facultative heterochromatin

description: Normalized ChIP-seq datasets for visualization in IGV. The tracks contain means of pooled replicate datasets. ChIP-seq data were quality-filtered and adapters removed with trimmomatic v.0.39 (Bolger et al., 2014). Mapping was performed with bowtie2 v.2.4.4 (Langmead and Salzberg, 2012), and sorting and indexing with samtools v.1.9 (Li, 2011). Normalized coverage bigwig files and heatmaps were created with deeptools v.3.5.1 (Ramírez et al., 2016). Wiggletools v.1.2 and the UCSC Genome Browser tools were used to calculate means for replicates and converting wig to bigwig files. Reference genome file is modified from Goodwin et al., 2011. Chromosome 18 was removed from the genome as our reference isolate is missing chromosome 18. Gene annotation file was obtained from FungiDB (release 53) and is based on the annotation published by Grandaubert et al., 2015.
description: {"references": ["Goodwin SB, Ben M'Barek S, Dhillon B, Wittenberg AHJ, Crane CF, et al. (2011) Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis. PLOS Genetics 7(6): e1002070. https://doi.org/10.1371/journal.pgen.1002070", "Basenko, Evelina Y., Jane A. Pulman, Achchuthan Shanmugasundram, Omar S. Harb, Kathryn Crouch, David Starns, Susanne Warrenfeltz, Cristina Aurrecoechea, Christian J. Stoeckert Jr., Jessica C. Kissinger, David S. Roos, and Christiane Hertz-Fowler. 2018. \"FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes\" Journal of Fungi 4, no. 1: 39. https://doi.org/10.3390/jof4010039", "Anthony M. Bolger, Marc Lohse, Bjoern Usadel, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, Volume 30, Issue 15, 1 August 2014, Pages 2114\u20132120, https://doi.org/10.1093/bioinformatics/btu170", "Langmead, B., Salzberg, S. Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357\u2013359 (2012). https://doi.org/10.1038/nmeth.1923", "Heng Li, A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data, Bioinformatics, Volume 27, Issue 21, 1 November 2011, Pages 2987\u20132993, https://doi.org/10.1093/bioinformatics/btr509", "Fidel Ram\u00edrez, Devon P Ryan, Bj\u00f6rn Gr\u00fcning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike D\u00fcndar, Thomas Manke, deepTools2: a next generation web server for deep-sequencing data analysis, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W160\u2013W165, https://doi.org/10.1093/nar/gkw257", "Jonathan Grandaubert, Amitava Bhattacharyya, Eva H Stukenbrock, RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements, G3 Genes|Genomes|Genetics, Volume 5, Issue 7, 1 July 2015, Pages 1323\u20131333, https://doi.org/10.1534/g3.115.017731"]}
DOI: 10.5281/zenodo.8232212
title: Publications reviewed in the article: Mountain protective forests under threat? An in-depth review of global change impacts on their protective effect against natural hazards

description: Detailed list of publications included in the review " Mountain protective forests under threat? An in-depth review of global change impacts on their protective effect against natural hazards" (Moos et al. 2023), including the type of global change impacts and protective service they address, the reported change in protective effect, whether the reported change is quantitative and linked to risk, the methods used to assess the change in the protective effect, country where the study area is located, and the scale of the study.
DOI: 10.5281/zenodo.8232211
title: Publications reviewed in the article: Mountain protective forests under threat? An in-depth review of global change impacts on their protective effect against natural hazards

description: Detailed list of publications included in the review " Mountain protective forests under threat? An in-depth review of global change impacts on their protective effect against natural hazards" (Moos et al. 2023), including the type of global change impacts and protective service they address, the reported change in protective effect, whether the reported change is quantitative and linked to risk, the methods used to assess the change in the protective effect, country where the study area is located, and the scale of the study.
DOI: 10.57841/casdc.0001794
title: 冲击载荷下Al2O3磨料对齿轮磨损行为的作用机理研究
DOI: 10.6084/m9.figshare.23916564
title: Raw data.zip

description: <b>Inhibition of infantile hemangioma growth and promotion of apoptosis via VEGF/PI3K/Akt axis by 755-nm long-pulse Alexandrite laser</b>
DOI: 10.6084/m9.figshare.23916564.v1
title: Raw data.zip

description: <b>Inhibition of infantile hemangioma growth and promotion of apoptosis via VEGF/PI3K/Akt axis by 755-nm long-pulse Alexandrite laser</b>
DOI: 10.5281/zenodo.8231999
title: Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutation at the protein universe scale

description: Pythia computed all single mutations of <em>E.coli</em> proteome, high quality high quality of Swiss-Prot structures and thermophilic proteins used in analysis.
DOI: 10.5281/zenodo.8231998
title: Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutation at the protein universe scale

description: Pythia computed all single mutations of <em>E.coli</em> proteome, high quality high quality of Swiss-Prot structures and thermophilic proteins used in analysis.
DOI: 10.5281/zenodo.8228370
title: Datasets for Out-of-KB Mention Discovery with Entity Linking

description: The repository contains datasets for out-of-KB mention discovery from texts, documented in the work, <em>Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking</em>, on arXiv: https://arxiv.org/abs/2302.07189 (CIKM 2023). Each data setting (as a sub-folder) contains train, valid, and test files and also 100 random sample files for each data split for debugging. Data folder names with “syn_full” at the end are synonym augmented data (each synonym as an entity) for the setting. Ontology .jsonl files have two versions for each, "syn_attr" setting treats synonyms are attributes, "syn_full" setting treats synonyms as entities. Data scripts are available at https://github.com/KRR-Oxford/BLINKout#data-scripts Acknowledgement of the data sources below: ShARe/CLEF 2013 dataset is from https://physionet.org/content/shareclefehealth2013/1.0/ MedMention dataset is from https://github.com/chanzuckerberg/MedMentions UMLS (versions 2012AB, 2014AB, 2017AA) is from https://www.nlm.nih.gov/research/umls/index.html SNOMED CT (corresponding versions) is from https://www.nlm.nih.gov/healthit/snomedct/index.html NILK dataset is from https://zenodo.org/record/6607514 WikiData 2017 dump is from https://archive.org/download/enwiki-20170220/enwiki-20170220-pages-articles.xml.bz2
DOI: 10.5281/zenodo.8228371
title: Datasets for Out-of-KB Mention Discovery with Entity Linking

description: The repository contains datasets for out-of-KB mention discovery from texts, documented in the work, <em>Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking</em>, on arXiv: https://arxiv.org/abs/2302.07189 (CIKM 2023). Each data setting (as a sub-folder) contains train, valid, and test files and also 100 random sample files for each data split for debugging. Data folder names with “syn_full” at the end are synonym augmented data (each synonym as an entity) for the setting. Ontology .jsonl files have two versions for each, "syn_attr" setting treats synonyms are attributes, "syn_full" setting treats synonyms as entities. Data scripts are available at https://github.com/KRR-Oxford/BLINKout#data-scripts Acknowledgement of the data sources below: ShARe/CLEF 2013 dataset is from https://physionet.org/content/shareclefehealth2013/1.0/ MedMention dataset is from https://github.com/chanzuckerberg/MedMentions UMLS (versions 2012AB, 2014AB, 2017AA) is from https://www.nlm.nih.gov/research/umls/index.html SNOMED CT (corresponding versions) is from https://www.nlm.nih.gov/healthit/snomedct/index.html NILK dataset is from https://zenodo.org/record/6607514 WikiData 2017 dump is from https://archive.org/download/enwiki-20170220/enwiki-20170220-pages-articles.xml.bz2
DOI: 10.5067/iss/sageiii/solar_netcdf4_l2-v5.2
title: SAGE III/ISS L2 Monthly Solar Event Species Profiles (NetCDF) V052
DOI: 10.5281/zenodo.10459147
title: The coral Sr/Ca, δ18O and ΔSSH data for Article "Influences of East Asian winter monsoon and El Niño-Southern Oscillation variability on the Kuroshio intrusion to the South China Sea over the past 60 years"
DOI: 10.17632/m34hh5gbfm.2
title: Processed temperature variances for Mars Science Laboratory, Phoenix, and Pathfinder

description: These files contain MSL REMS temperature variances in an array of solar longitude by local time. The solar longitude is in the Mars Year format, (MY - 24)*360. Phoenix and Pathfinder variances are in an array of solar longitude by local time. The solar longitude format is normal.
DOI: 10.17632/p3wnhjwr88.1
title: summertime PM2.5 and ozone data in southern China (2015-2022)

description: co-occurrence of PM2.5 and ozone extremes
DOI: 10.6084/m9.figshare.23232263
title: Model input files and focal mechanism information

description: simple fault models.zip and complex fault models.zip contain input Poly3D and Triinv files. SoCal_focal_mechanisms.mat contains information about the focal mechanisms we use to derive stress states using the MSATSI software (Martinez-Garzon et al., 2014). file explanation.pdf provides detailed information about each file and its contents. The input files in this database run with Poly3D or triinv. Poly3d is made available by the Stanford Tectonic Geomorphology lab at https://github.com/stgl/poly3d. The inversion software Triinv is available at https://github.com/jploveless/triinv.
DOI: 10.5281/zenodo.5507190
title: Malawi Active Fault Database

description: First release of the Malawi Active Fault Database (MAFD) associated with a publication in review with the journal Geochemistry, Geophysics and Geosystems. To reference this database please refer to the latest release of the dataset on Github and Zenodo and please also cite: Williams, J. N., Wedmore, L. N. J., Scholz, C. A., Kolawole, F., Wright, L. J. M., Shillington, D., Fagereng, Å., Biggs, J., Mdala, H., Dulanya, Z., Mphepo, F., Chindandali, P. R. N., Werner, M. J. (2022), The Malawi Active Fault Database: an onshore-offshore database for regional assessment of seismic hazard and tectonic evoultion. _Geochemistry, Geophysics, Geosystems_, 23(5), e2022GC010425. https://doi.org/10.1029/2022GC010425 For full details of the database, please refer to the journal article above.
DOI: 10.5281/zenodo.8037463
title: data for paper:

description: Here are the data description ON2r213nw, ON2r214nw, ON2r215nw, ON2r216nw: TIEGCM simulated column density ratio of O to N2 on DOY 213-216 with real IMF in 2021. The array dimensions are 288*144*96, 288 stands for longitude numbers from -180 to 180 in a resolution of 1.25. 144stands for latitude numbers from -88.75 to 88.75 in a resolution of 1.25. 96 stands for times, from 0:10 UT to 23:55 UT in a 15 minutes resolution. ON2r 214nw0byn stands for O/N2 without IMF By. same dimension as aboved ON2 files with name UN, VN are zonal and meridonal winds near 160 km simulated by TIEGCM, same dimensions as ON2.
DOI: 10.5281/zenodo.8358262
title: Global sea-surface DMS concentrations estimated through data-driven approaches

description: DMS_ML_average.nc and DMS_SAT-OPT_average.nc represent the 10-year (2011-2020) average monthly seawater DMS concentrations (1°x1°) calculated using two different methods, ML and SAT-OPT, respectively.
DOI: 10.1594/wdcc/eh4_opyc_sres_b2
title: ECHAM4_OPYC_SRES_B2: 110 YEARS COUPLED B2 RUN 6H VALUES

description: Project: IPCC Third Assessment Report ECHAM4/OPYC data sets - The project embrases the simulations with the coupled climate model ECHAM4/OPYC, relevant for the third assessment report (TAR, http://www.ipcc.ch/ipccreports/assessments-reports.htm) of the Intergovernmental Panel on Climate Change (IPCC).The IPCC has been established by WMO and UNEP to assess scientific, technical and socio-economic information, relevant for the understanding of climate change, its potential impacts and options for adaption and mitigation. A more detailed description about the work of the IPCC can be found at the IPCC homepage ( http://www.ipcc.ch ) and at ( www.grida.no/climate/ipcc ). As a further development the Special Report on Emission Scenarios (SRES, http://www.grida.no/Climate/ipcc/emission/) have been constructed, to describe (potential) future developments in the global enviroment with special reference to the production of greenhouse gases and aerosol precursor emissions. A set of four scenarios families (A1, A2, B1, B2) have been developed (see also http://www.grida.no/climate/ipcc/emission/index.htm ) The model output data are available at the World Data Center for Climate, Hamburg.( wdc-climate.de ). Projection of future trends based on selected emission scenarios are provided through this project for a great many model variables of ECHAM4/OPYC. For a selected set of variables the IDCC-Data Distribution Center provides additional data sets from a multitude of models that contribute to the IPCC-TAR report (project: IPCC_DDC_TAR). Summary: The SRES data sets were published by the IPCC in 2000 and classified into four different scenario families (A1, A2, B1, B2). SRES_B2 storyline describes a world in which the emphasis is on local solutions to economic, social and enviromental sustainability. The global population is increasing at a lower rate than A2. It has an intermediate level of economic development and a less rapid and more diverse technological change than in A1 and B1. The model consists of the atmospheric component which based on the weather forecast model of ECMWF. The atmospheric component is the standard model version of a 19-level hybrid sigma-pressure coordinate system. The ocean component is a model which computes with isopycnal coordinates. This data set is an enlargement of the IPCC data set and provides additional meteorological parameters. The run produces 6h values of the variables. ECHAM4/OPYC3 (http://ipcc-data.org/gcm/models/tar/echam4opyc3.html ) Changes af anthropogenic emissions of CO2, CH4, N2O and sulphur dioxide are prescribed according to the above mentioned scenario. The model run starts in 1990 from the results of the scenario run GSDIO (Experiment EH4OPYC_22723GSDIO) which has been run with observed conditions for the time period 1860-1990.
DOI: 10.5281/zenodo.10405093
title: Long-Term Stability of Light-Induced Ti3+ Defects in TiO2 Nanotubes for Amplified Photoelectrochemical Water Splitting

description: Dataset of results presented in article:

Long-Term Stability of Light-Induced Ti3+ Defects in TiO2 Nanotubes for Amplified Photoelectrochemical Water Splitting. ChemSusChem 2024 DOI:10.1002/cssc.202301614

Acknowledgements:

E. W. would like to acknowledge the Polish National Agency For Academic Exchange, Polish Returns Programme (Project no. BPN/PPO/ 2021/1/00002), and the National Science Centre, Poland (Project no. 2022/01/1/ST5/00019) for financial support of the project. In addition, this research was supported by the Military University of Technology, grant number UGB 22-728. This support is gratefully acknowledged. The authors thank C. Erdmann for help with performing the transmission electron microscopy measurements and Dr Andrea Zehl for helping with EPR measurements.
DOI: 10.5281/zenodo.10405094
title: Long-Term Stability of Light-Induced Ti3+ Defects in TiO2 Nanotubes for Amplified Photoelectrochemical Water Splitting

description: Dataset of results presented in article:

Long-Term Stability of Light-Induced Ti3+ Defects in TiO2 Nanotubes for Amplified Photoelectrochemical Water Splitting. ChemSusChem 2024 DOI:10.1002/cssc.202301614

Acknowledgements:

E. W. would like to acknowledge the Polish National Agency For Academic Exchange, Polish Returns Programme (Project no. BPN/PPO/ 2021/1/00002), and the National Science Centre, Poland (Project no. 2022/01/1/ST5/00019) for financial support of the project. In addition, this research was supported by the Military University of Technology, grant number UGB 22-728. This support is gratefully acknowledged. The authors thank C. Erdmann for help with performing the transmission electron microscopy measurements and Dr Andrea Zehl for helping with EPR measurements.
DOI: 10.6084/m9.figshare.25133126
title: MATLAB Code for LCMJ20

description: Force-Time Analysis of Loaded CMJ. Matlab code for power output and traditional RP analysis.
DOI: 10.6084/m9.figshare.25133126.v1
title: MATLAB Code for LCMJ20

description: Force-Time Analysis of Loaded CMJ. Matlab code for power output and traditional RP analysis.
DOI: 10.17615/jahb-6138
title: Web files for: Changing Lanes: A Reanimation of Shell Oil’s Carol Lane

description: This digital dissertation, "Changing Lanes: A Reanimation of Shell Oil’s Carol Lane," is a case study of a mid-20th-century public relations (PR) program, sponsored by Shell Oil and Shell Canada, that targeted American and Canadian women motorists. From 1947 to 1974, Carol Lane was Women’s Travel Director for Shell Oil Company and the face and voice of the program. Her role was to extol to her audiences of primarily women the joys of touring the country by car safely with family, friends, or alone. She traveled the country lecturing on travel tips for safe, economical, entertaining, and even educational, vacations by automobile. Her primary audiences were women’s clubs, before whom she presented live as an invited guest; and while visiting their cities or towns, she appeared on their local radio and television stations. While on the road, Lane also conducted market research, collecting travel tips from women along the way. She even rewarded clubwomen with a Carol Lane Award for initiating successful traffic safety programs in their communities, and entertained the wives of Shell gas station owners at grand luncheons. The Carol Lane program’s outreach activities were all intended to indirectly enhance Shell’s corporate image as one that was forward-thinking enough to hire a woman for such a high-profile position and honor women as opinion leaders in their respective communities. 

Carol Lane, however, was what is called a "living trademark," or a fictional composite of over twenty women (plus dozens more radio-only versions) who portrayed Lane simultaneously while using the pseudonym. This dissertation examines this mainly twentieth-century marketing phenomenon, and exposes an entire network of Lane performers and associated personnel who supported the program, as well as her audiences, her circle of fellow PR living trademarks, spokespeople, and columnists.
DOI: 10.17615/969n-2n74
title: Use of Journal Clubs and Book Clubs in Pharmacy Education: A Scoping Review: Search Strategies

description: This document is an appendix to the journal article titled, "Use of Journal Clubs and Book Clubs in Pharmacy Education: A Scoping Review," and provides the complete literature search strategies for the review.
DOI: 10.25326/625
title: LIAISE_RAINN_SMC_1HRAIN_L3

description: Accumlated precipitation during 1 hour using radar and rain gauges.
DOI: 10.6084/m9.figshare.25133228
title: SPM Code

description: SPM code to anlayse force-time curve data in RPA LCMJ20
DOI: 10.5281/zenodo.10608911
title: Prediction of prognostic features based on neutrophil-related genes for lung squamous cell carcinoma reveals immune landscape and drug candidates
DOI: 10.5281/zenodo.10608912
title: Prediction of prognostic features based on neutrophil-related genes for lung squamous cell carcinoma reveals immune landscape and drug candidates
DOI: 10.6084/m9.figshare.25133297
title: Normalised LCMJ20 data set formatted for SPM analysis

description: Normalised loaded countermovement jump (LCMJ20) data for SPM analysis
DOI: 10.5517/ccdc.csd.cc2fzsdm
title: CCDC 2263911: Experimental Crystal Structure Determination

description: Related Article: Sahanwaj Khan, Swaraj Sengupta, Md. Adnan Khan, Md. Palashuddin Sk, Narayan Ch. Jana, Subhendu Naskar|2024|Inorg.Chem.|63|1888|doi:10.1021/acs.inorgchem.3c03512
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.