cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23641/asha.25148999
title: Story grammar recovery: The first 2 years post-TBI (Greenslade et al., 2024)

description: <b>Purpose: </b>Narration within a story grammar framework requires speakers to organize characters and events logically. Despite abundant research characterizing narrative deficits following a traumatic brain injury (TBI), the evolution of narrative story grammar over the first 2 years post-TBI has rarely been explored. This study analyzed story grammar in complex narratives of adults with and without severe TBI to (a) examine between-group differences and (b) investigate longitudinal changes over the first 2 years post-TBI.<b>Method: </b>Story grammar analyses of Cinderella narratives from 57 participants with TBI and 57 participants with no brain injury yielded measures of productivity (total number of episodes, total number of story grammar elements), elaboration (total number of elaborated–complete episodes, mean number of episodic elements per episode), and completeness (total number of incomplete episodes). Mann–Whitney U tests compared measures across groups; generalized estimating equation (GEE) models identified predictors of change, including recovery time (3, 6, 9, 12, and 24 months post-TBI) and demographic/injury-related characteristics.<b>Results:</b> Between-group differences were statistically significant for all productivity and elaboration measures at 3, 6, and 9 months post-TBI; one productivity measure and one elaboration measure at 12 months; and none of the measures at 24 months. GEE models showed significant improvements in all productivity and elaboration measures over the first 24 months post-TBI, with educational attainment and duration of posttraumatic amnesia affecting recovery. Incomplete episodes only showed between-group differences at 12 months and did not capture recovery.<b>Conclusion:</b> Productivity and elaboration are key story grammar variables that (a) differentiate complex narration in individuals with and without severe TBI and (b) capture narrative improvements over the first 2 years post-TBI.<b>Supplemental Material S1. </b>Sex comparisons in the NBI group for each narrative variable.Greenslade, K. J., Bogart, E., Gyory, J., Jaskolka, S., & Ramage, A. E. (2024). Story grammar analyses capture discourse improvement in the first 2 years following a severe traumatic brain injury. <i>American Journal of Speech-Language Pathology</i>, <i>33</i>(2), 1004–1020. https://doi.org/10.1044/2023_AJSLP-23-00269
DOI: 10.5517/ccdc.csd.cc2ch265
title: CCDC 2189226: Experimental Crystal Structure Determination

description: Related Article: Xin Lian, Pu-Xu Liu, Yue-Chao Yuan, Jing-Jing Pang, Lin Li, Shan-Shan Liu, Bin Yue, Ying-Hui Zhang, Libo Li, Jian Xu Xian-He Bu|2023|Adv.Funct.Mater.|34|2312150|doi:10.1002/adfm.202312150
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f61h6
title: CCDC 2240137: Experimental Crystal Structure Determination

description: Related Article: Faiza Habib, Derek A. Tocher, Claire J. Carmalt|2023|CrystEngComm|25|5001|doi:10.1039/D3CE00592E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f9tf0
title: CCDC 2243762: Experimental Crystal Structure Determination

description: Related Article: Faiza Habib, Derek A. Tocher, Claire J. Carmalt|2023|CrystEngComm|25|5001|doi:10.1039/D3CE00592E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f61j7
title: CCDC 2240138: Experimental Crystal Structure Determination

description: Related Article: Faiza Habib, Derek A. Tocher, Claire J. Carmalt|2023|CrystEngComm|25|5001|doi:10.1039/D3CE00592E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10855087
title: Darwin Dataset

description: This artifact contains the dataset used in experiments for the ICSE submission "Predictive Mutation Testing via Graph Neural Networks and Neural Architecture Search".

The filesystem is as follows:

defects4j_coverage/ - Coverage files for the projects

defects4j_graphs/ - The parsed graph representations generated by Darwin

defects4j_major_mutants/ - files generated by major used for forming labels

defects4j_pit_mutants/ - files generated by pit for forming labels

defects4j_raw_graphs/ - The raw graph representations generated by Darwin

major_labels.json - The labels for the major dataset

mutations.json - The one-hot encoding of mutants in the major dataset

PIT_labels.json - The labels for the PIT dataset

tokenDict.json - The one hot encoding for nodes in graphs
DOI: 10.6084/m9.figshare.23535516
title: Dated tree of Amblycera

description: Dated concatenated tree of Amblycera built from a target set of 2395 single-copy ortholog human louse genes.
DOI: 10.6084/m9.figshare.23557530
title: Coalescent tree

description: <strong>Coalescent tree of Amblycera.</strong> Based on ASTRAL analysis of target set of 2395 protein-coding genes, combining individual gene trees into a species tree. Numbers associated with branches indicate local posterior probability.
DOI: 10.6084/m9.figshare.23557530.v1
title: Coalescent tree

description: <strong>Coalescent tree of Amblycera.</strong> Based on ASTRAL analysis of target set of 2395 protein-coding genes, combining individual gene trees into a species tree. Numbers associated with branches indicate local posterior probability.
DOI: 10.6084/m9.figshare.25254259
title: GenBank flat files

description: GenBank files of Amblyceran mitochondrial genomes.
DOI: 10.6084/m9.figshare.25254259.v1
title: GenBank flat files

description: GenBank files of Amblyceran mitochondrial genomes.
DOI: 10.6084/m9.figshare.23535321
title: Simple-circularise results

description: Files produced by Simple-circularise during circularization of amblyceran mitochondrial chromosomes.
DOI: 10.6084/m9.figshare.23535321.v1
title: Simple-circularise results

description: Files produced by Simple-circularise during circularization of amblyceran mitochondrial chromosomes.
DOI: 10.6084/m9.figshare.23535363
title: MITOS2 annotation results

description: Results of annotation of amblyceran mitochondrial chromosomes in MITOS2.
DOI: 10.6084/m9.figshare.23535516.v1
title: Dated tree of Amblycera

description: Dated concatenated tree of Amblycera built from a target set of 2395 single-copy ortholog human louse genes.
DOI: 10.6084/m9.figshare.23535246
title: Circularization results

description: Spreadsheet with results of circularization of amblyceran mitochondrial chromosomes. Sheet "AWA results" contains the final information that was used for the decision about circularization. Yellow and white colours serve for distinguishing different versions of the same contig. Definitely chosen contigs marked with green, contigs that were not circularized by blue.
DOI: 10.6084/m9.figshare.23535303
title: TCSF final results

description: Final contigs manually selected from preliminary TCSF results, these contigs were used for further circularization.
DOI: 10.6084/m9.figshare.23535318
title: Fastqc of trimmed reads

description: Fastqc files showing results of quality control in trimmed shotgun reads of Amblycera.
DOI: 10.6084/m9.figshare.23535318.v1
title: Fastqc of trimmed reads

description: Fastqc files showing results of quality control in trimmed shotgun reads of Amblycera.
DOI: 10.6084/m9.figshare.23535234.v1
title: Separate genes fasta files

description: Fasta files containing separated sequences of mitochondrial genes of Amblycera.
DOI: 10.6084/m9.figshare.23535246.v1
title: Circularization results

description: Spreadsheet with results of circularization of amblyceran mitochondrial chromosomes. Sheet "AWA results" contains the final information that was used for the decision about circularization. Yellow and white colours serve for distinguishing different versions of the same contig. Definitely chosen contigs marked with green, contigs that were not circularized by blue.
DOI: 10.6084/m9.figshare.23535201
title: Concatenated protein-coding genes

description: Fasta files with concatenated mitochondrial protein-coding genes of Amblycera.
DOI: 10.6084/m9.figshare.23535201.v1
title: Concatenated protein-coding genes

description: Fasta files with concatenated mitochondrial protein-coding genes of Amblycera.
DOI: 10.6084/m9.figshare.23535207
title: Final fasta files

description: Fasta files with mitochondrial genomes of Amblycera.
DOI: 10.6084/m9.figshare.23535210
title: AT content of fourfold degenerate separate genes

description: Files exported from MEGA containing AT contents of fourfold degenerate sites filtered from separate protein-coding genes.
DOI: 10.6084/m9.figshare.23535210.v1
title: AT content of fourfold degenerate separate genes

description: Files exported from MEGA containing AT contents of fourfold degenerate sites filtered from separate protein-coding genes.
DOI: 10.6084/m9.figshare.23535234
title: Separate genes fasta files

description: Fasta files containing separated sequences of mitochondrial genes of Amblycera.
DOI: 10.6084/m9.figshare.23535507
title: Concatenated tree of Amblycera

description: Concatenated tree of Amblycera built from a target set of 2395 single-copy ortholog human louse genes.
DOI: 10.6084/m9.figshare.23535507.v1
title: Concatenated tree of Amblycera

description: Concatenated tree of Amblycera built from a target set of 2395 single-copy ortholog human louse genes.
DOI: 10.6084/m9.figshare.23535192
title: Amblycera vouchers

description: Photos of vouchers of amblyceran lice that were used for the analysis of mitogenomes.
DOI: 10.6084/m9.figshare.23535207.v1
title: Final fasta files

description: Fasta files with mitochondrial genomes of Amblycera.
DOI: 10.6084/m9.figshare.23532915
title: Csv annotations

description: Csv files annotating genes on mitochondrial chromosomes of Amblycera
DOI: 10.6084/m9.figshare.23532915.v1
title: Csv annotations

description: Csv files annotating genes on mitochondrial chromosomes of Amblycera
DOI: 10.6084/m9.figshare.23532927
title: AWA log files

description: Log files of circularization produced by AWA.
DOI: 10.6084/m9.figshare.23532927.v1
title: AWA log files

description: Log files of circularization produced by AWA.
DOI: 10.6084/m9.figshare.23535186
title: AWA fasta files

description: Fasta files with mitochondrial chromosomes of Amblycera circularized by AWA.
DOI: 10.6084/m9.figshare.23535192.v1
title: Amblycera vouchers

description: Photos of vouchers of amblyceran lice that were used for the analysis of mitogenomes.
DOI: 10.6084/m9.figshare.23475647
title: Supplement tables

description: A file containing 19 supplementary tables.
DOI: 10.6084/m9.figshare.23528274
title: Open reading frames

description: Open reading frames identified on mitochondrial chromosomes of Amblycera
DOI: 10.6084/m9.figshare.23532909
title: Gff annotations

description: Gff files annotating genes on mitochondrial chromosomes of Amblycera
DOI: 10.6084/m9.figshare.23475647.v1
title: Supplement tables

description: A file containing 19 supplementary tables.
DOI: 10.6084/m9.figshare.23528274.v1
title: Open reading frames

description: Open reading frames identified on mitochondrial chromosomes of Amblycera
DOI: 10.23641/asha.24843753
title: A review of pharyngeal manometry normative data (Walters et al., 2023)

description: <b>Purpose:</b> The utilization of high-resolution pharyngeal manometry (HRPM) in the evaluation of pharyngeal dysphagia has been increasing; however, standardization of its use has lagged behind. Without standardization using normative values, it is difficult for clinicians to adopt this emerging technology into meaningful use. Our goal is to map and compare the published normative values for common HRPM metrics in order to help establish consensus reference values.<b>Method: </b>A systematic review was conducted on prospective and retrospective studies that included HRPM metrics, defined by an international working group consensus, in healthy adult populations. Data on the following variables were extracted when available: contractile integrals of the pharynx (PhCI), velopharynx, mesopharynx, and hypopharynx, as well as the upper esophageal sphincter (UES) integrated relaxation pressure (IRP), relaxation time (RT), maximum admittance, and hypopharyngeal intrabolus pressure.<b>Results:</b> Thirty studies were included. Significant variation existed in the technique and equipment used to perform procedures between the different studies. Lower PhCIs and UES IRPs were seen in younger compared to older individuals. Higher UES RTs were found in individuals in the upright position compared to the supine position and in those using larger boluses sizes or smaller catheters.<b>Conclusions:</b> Due to the wide variety of protocols, catheter configurations, manufacturers, and software used in the existing literature, it is difficult to formulate consensus on HPRM normative values using pooled data. Prospective studies adhering to standardized HRPM protocols for specific catheter configurations and manufacturers with larger cohorts of normal individuals are necessary to establish proper reference values for HRPM metrics.<b>Supplemental Material S1. </b>Findings for all mean consensus metrics, as well as variations in catheter diameter, manufacturer, patient positioning, sampling frequency, and bolus types and volumes.Walters, R. K., Gudipudi R., Gordis, T., Davidson, K., Nguyen, S. A., & O’Rourke, A. K. (2023). A systematic review of pharyngeal high-resolution manometry normative data. <i>American Journal of Speech-Language Pathology</i>, <i>33</i>(2), 1059–1068. https://doi.org/10.1044/2023_AJSLP-23-00221
DOI: 10.23641/asha.24843753.v1
title: A review of pharyngeal manometry normative data (Walters et al., 2023)

description: <b>Purpose:</b> The utilization of high-resolution pharyngeal manometry (HRPM) in the evaluation of pharyngeal dysphagia has been increasing; however, standardization of its use has lagged behind. Without standardization using normative values, it is difficult for clinicians to adopt this emerging technology into meaningful use. Our goal is to map and compare the published normative values for common HRPM metrics in order to help establish consensus reference values.<b>Method: </b>A systematic review was conducted on prospective and retrospective studies that included HRPM metrics, defined by an international working group consensus, in healthy adult populations. Data on the following variables were extracted when available: contractile integrals of the pharynx (PhCI), velopharynx, mesopharynx, and hypopharynx, as well as the upper esophageal sphincter (UES) integrated relaxation pressure (IRP), relaxation time (RT), maximum admittance, and hypopharyngeal intrabolus pressure.<b>Results:</b> Thirty studies were included. Significant variation existed in the technique and equipment used to perform procedures between the different studies. Lower PhCIs and UES IRPs were seen in younger compared to older individuals. Higher UES RTs were found in individuals in the upright position compared to the supine position and in those using larger boluses sizes or smaller catheters.<b>Conclusions:</b> Due to the wide variety of protocols, catheter configurations, manufacturers, and software used in the existing literature, it is difficult to formulate consensus on HPRM normative values using pooled data. Prospective studies adhering to standardized HRPM protocols for specific catheter configurations and manufacturers with larger cohorts of normal individuals are necessary to establish proper reference values for HRPM metrics.<b>Supplemental Material S1. </b>Findings for all mean consensus metrics, as well as variations in catheter diameter, manufacturer, patient positioning, sampling frequency, and bolus types and volumes.Walters, R. K., Gudipudi R., Gordis, T., Davidson, K., Nguyen, S. A., & O’Rourke, A. K. (2023). A systematic review of pharyngeal high-resolution manometry normative data. <i>American Journal of Speech-Language Pathology</i>, <i>33</i>(2), 1059–1068. https://doi.org/10.1044/2023_AJSLP-23-00221
DOI: 10.6084/m9.figshare.23589228
title: Gene alignments

description: Files of individual genes aligned and backtranslated.
DOI: 10.6084/m9.figshare.23589228.v1
title: Gene alignments

description: Files of individual genes aligned and backtranslated.
DOI: 10.34740/kaggle/dsv/7917080
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.34740/kaggle/dsv/7917095
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.15468/g7m7c8
title: Texas Turtles Specimen Collection

description: The collection consists of fluid preserved specimens, dry skeletal specimens and associated tissues
DOI: 10.15468/u757ag
title: Texas Turtles Digital Collection

description: The Texas Turtles Digital Collection consists of archived images and video. The resource also serves as a repository for voucher photographs of live specimens.
DOI: 10.5066/p1gvahng
title: qPCR detection and quantitative results for Northern Pike (Esox lucius) from environmental (e)DNA samples collected along Miller Creek, Kenai Peninsula, Alaska in February and March of 2024

description: The dataset contains qualitative detection and quantitative results of Esox Lucius DNA in environmental (e)DNA water samples collected from Miller Creek, Alaska and analyzed with quantitative PCR.
DOI: 10.5281/zenodo.10854965
title: Replication package

description: Replication package
DOI: 10.5281/zenodo.10854966
title: Replication package

description: Replication package
DOI: 10.5281/zenodo.10855129
title: Replication package

description: Replication package
DOI: 10.6084/m9.figshare.23535186.v1
title: AWA fasta files

description: Fasta files with mitochondrial chromosomes of Amblycera circularized by AWA.
DOI: 10.5281/zenodo.10855135
title: Dataset to Clues to mopane resilience from the perspective of Paleoecology

description: Dataset accomopanying paper on  Clues to mopane resilience from the perspective of Paleoecology submitted to Landscape Ecology.

The dataset contains paleoecological data from Lake Chiluetse, Mozambique and site data from archaeological surveys: Lithics and Ceramics.
DOI: 10.5281/zenodo.10855136
title: Dataset to Clues to mopane resilience from the perspective of Paleoecology

description: Dataset accomopanying paper on  Clues to mopane resilience from the perspective of Paleoecology submitted to Landscape Ecology.

The dataset contains paleoecological data from Lake Chiluetse, Mozambique and site data from archaeological surveys: Lithics and Ceramics.
DOI: 10.6084/m9.figshare.14874318
title: 2023 Vertebrate Nidovirus discovery paper

description: We provide supplemental data for the paper "Deep mining of the Sequence Read Archive reveals bipartite coronavirus genomes and inter-family Spike glycoprotein recombination" published in "xxx".<br>
DOI: 10.5281/zenodo.10855143
title: [IO Islamic 3230] نيرنگ عشق

description: Nairang-i-’Ishḳ

This manuscript is now IO Islamic 1651 in the India Office collections.

[metadata: Hermann Ethé, Catalogue of Persian Manuscripts in the Library of the India Office, 2 vols. (Oxford: India Office, 1903): volume 1, number 3230 here with notations and hyperlinks].


1651

The same.

Beginning as in the preceding copies. As heading before the preface appears here: غازه پردازئ رخسار شاهد كتاب از ريختن رنگ سخن در مقام توحيد و گلگونه سازئ چهرۀ عشق نيرنگ از خون دل خوردن در عرصۀ تقرير و از تقليد’.

No date. Twelfth century of Hijrah. As copyist is mentioned, on fol. 55a (by a third hand, it seems), Ghulâm Muḥammad. A note, affixed to the fly-leaf by C. Raikes, Commissioner and Superintendent, states that this, ‘like Heer and Rauja, is a love-story. Ghuneemut died recently (sic!) at Goojerat and is the author of a Deewan or collection of odes. Sent to the Imperial Exhibition at Paris for works of art and industry by the Punjab Committee at Lahore.’ It was received from Dr. Royle, July, 1856.

No. 3230, ff. 55, 2 coll., each ll. 14 (on ff. 1-30), ll. 15 (on ff. 31-54); Nasta’lîḳ, by two different hands; size, 101/8 in. by 61/8 in.
DOI: 10.5281/zenodo.10855144
title: [IO Islamic 3230] نيرنگ عشق

description: Nairang-i-’Ishḳ

This manuscript is now IO Islamic 1651 in the India Office collections.

[metadata: Hermann Ethé, Catalogue of Persian Manuscripts in the Library of the India Office, 2 vols. (Oxford: India Office, 1903): volume 1, number 3230 here with notations and hyperlinks].


1651

The same.

Beginning as in the preceding copies. As heading before the preface appears here: غازه پردازئ رخسار شاهد كتاب از ريختن رنگ سخن در مقام توحيد و گلگونه سازئ چهرۀ عشق نيرنگ از خون دل خوردن در عرصۀ تقرير و از تقليد’.

No date. Twelfth century of Hijrah. As copyist is mentioned, on fol. 55a (by a third hand, it seems), Ghulâm Muḥammad. A note, affixed to the fly-leaf by C. Raikes, Commissioner and Superintendent, states that this, ‘like Heer and Rauja, is a love-story. Ghuneemut died recently (sic!) at Goojerat and is the author of a Deewan or collection of odes. Sent to the Imperial Exhibition at Paris for works of art and industry by the Punjab Committee at Lahore.’ It was received from Dr. Royle, July, 1856.

No. 3230, ff. 55, 2 coll., each ll. 14 (on ff. 1-30), ll. 15 (on ff. 31-54); Nasta’lîḳ, by two different hands; size, 101/8 in. by 61/8 in.