cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12418550.v2
title: COVID-19 Data Checking and Repairing (CDCAR)

description: Over the past several months, the outbreak of COVID-19 has been expanding over the world. A reliable and accurate dataset of the cases is vital for scientists to conduct related research and for policy-makers to make better decisions. We collect the COVID-19 daily reported data from four open sources: the New York Times, the COVID-19 Data Repository by Johns Hopkins University, the COVID Tracking Project at the Atlantic, and the USAFacts, and compare the similarities and differences among them. In addition, we examine the following problems which occur frequently: (1) the order dependencies violation, (2) abnormal data point and/or period, and (3) the delay-reported issue on weekends and/or holidays. We also integrate the COVID-19 reported cases with the county-level auxiliary information of the local features from official sources, such as health infrastructure, demographic, socioeconomic, and environment information, which are essential for understanding the spread of the virus.
DOI: 10.6084/m9.figshare.12417824
title: tcr_beta_synrep_set2_08.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417848
title: tcr_beta_synrep_set2_09.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417824.v1
title: tcr_beta_synrep_set2_08.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417848.v1
title: tcr_beta_synrep_set2_09.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417812
title: Appendix_model from Sympatric ecological divergence with coevolution of niche preference

description: Detailed annotated Mathematica file with models used in the study and their analyses
DOI: 10.6084/m9.figshare.12417809
title: SimulationCodeSympatricDivergence from Sympatric ecological divergence with coevolution of niche preference

description: Detailed annotated Mathematica file with code used for the individual based simulations.
DOI: 10.6084/m9.figshare.12417812.v1
title: Appendix_model from Sympatric ecological divergence with coevolution of niche preference

description: Detailed annotated Mathematica file with models used in the study and their analyses
DOI: 10.6084/m9.figshare.12417809.v1
title: SimulationCodeSympatricDivergence from Sympatric ecological divergence with coevolution of niche preference

description: Detailed annotated Mathematica file with code used for the individual based simulations.
DOI: 10.6084/m9.figshare.12417752
title: NEM 3386 Table S2

description: Mass spectrometry data from protein extractions were analysed for potential SC protein candidates. Proteins identified in two or more protein extractions with peptide match confidence limits of &gt;95% and protein match confidence limits of &gt;99% were retained for further analysis, while protein hits that did not meet these strict criteria were discarded
DOI: 10.6084/m9.figshare.12417752.v1
title: NEM 3386 Table S2

description: Mass spectrometry data from protein extractions were analysed for potential SC protein candidates. Proteins identified in two or more protein extractions with peptide match confidence limits of &gt;95% and protein match confidence limits of &gt;99% were retained for further analysis, while protein hits that did not meet these strict criteria were discarded
DOI: 10.6084/m9.figshare.12417680
title: tcr_beta_synrep_set2_01.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417647
title: tcr_beta_synrep_set2_00.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417680.v1
title: tcr_beta_synrep_set2_01.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417554
title: anderson_refs.csv

description: csv file for Library Carpentry lesson on using litsearchr for systematic reviews
DOI: 10.6084/m9.figshare.12417647.v1
title: tcr_beta_synrep_set2_00.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417554.v1
title: anderson_refs.csv

description: csv file for Library Carpentry lesson on using litsearchr for systematic reviews
DOI: 10.6084/m9.figshare.12417278
title: Site-Specific Ubiquitination of Pathogenic Huntingtin Attenuates its Deleterious Effects

description: Datasets related to manuscript "Site-Specific Ubiquitination of Pathogenic Huntingtin Attenuates its Deleterious Effects" by Hakim-Eshed, Boulos, Cohen-Rosenzweig,Yu-Taeger, Ziv, Kwon, Riess, Nguyen,Ziv and Ciechanover (2020)<br>
DOI: 10.6084/m9.figshare.12417278.v1
title: Site-Specific Ubiquitination of Pathogenic Huntingtin Attenuates its Deleterious Effects

description: Datasets related to manuscript "Site-Specific Ubiquitination of Pathogenic Huntingtin Attenuates its Deleterious Effects" by Hakim-Eshed, Boulos, Cohen-Rosenzweig,Yu-Taeger, Ziv, Kwon, Riess, Nguyen,Ziv and Ciechanover (2020)<br>
DOI: 10.6084/m9.figshare.12417239
title: Figure 5 Histopath slides

description: Histopathology data
DOI: 10.6084/m9.figshare.12417263
title: Tsikoane suppl. material

description: The upper Stormberg Group of Lesotho has an abundant and diverse ichnological record that dates to the Early Jurassic. Herein, we re-evaluate a known ichnosite in the lowermost Clarens Formation (Karoo Supergroup) at Tsikoane in northern Lesotho. The site was reported to preserve tridactyl tracks as natural casts in the ceiling of overhangs and true track impressions on a fallen sandstone block. At least three track-bearing palaeosurfaces, associated with horizontally laminated sandstones and desiccated green mudstones, can be traced over a distance of 250 m. Associated with one of the track-bearing palaeosurfaces, discrete, U-shaped, cross-sectional structures are interpreted as a series of natural casts, surface tracks, true tracks and undertracks. Although the Tsikoane tracks were historically assigned to a single ichnogenus, later synonymized with<i> Grallator</i>, our findings show a higher diversity of tridactyl ichnites, with tracks that have <i>Kayentapus</i>-like and <i>Eubrontes</i>-like features in addition to previously recognized <i>Grallator</i>-like features. These new findings, within their high-resolution sedimentological context, improve the understanding of theropod palaeodiversity and palaeoecology in southern Africa during a crucial period in dinosaur history marked by increases in both abundance and diversity.
DOI: 10.6084/m9.figshare.12417263.v1
title: Tsikoane suppl. material

description: The upper Stormberg Group of Lesotho has an abundant and diverse ichnological record that dates to the Early Jurassic. Herein, we re-evaluate a known ichnosite in the lowermost Clarens Formation (Karoo Supergroup) at Tsikoane in northern Lesotho. The site was reported to preserve tridactyl tracks as natural casts in the ceiling of overhangs and true track impressions on a fallen sandstone block. At least three track-bearing palaeosurfaces, associated with horizontally laminated sandstones and desiccated green mudstones, can be traced over a distance of 250 m. Associated with one of the track-bearing palaeosurfaces, discrete, U-shaped, cross-sectional structures are interpreted as a series of natural casts, surface tracks, true tracks and undertracks. Although the Tsikoane tracks were historically assigned to a single ichnogenus, later synonymized with<i> Grallator</i>, our findings show a higher diversity of tridactyl ichnites, with tracks that have <i>Kayentapus</i>-like and <i>Eubrontes</i>-like features in addition to previously recognized <i>Grallator</i>-like features. These new findings, within their high-resolution sedimentological context, improve the understanding of theropod palaeodiversity and palaeoecology in southern Africa during a crucial period in dinosaur history marked by increases in both abundance and diversity.
DOI: 10.6084/m9.figshare.12417197
title: tcr_beta_synrep_set1_09.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417197.v1
title: tcr_beta_synrep_set1_09.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12417113
title: Cost_Echo_figshare_upload.xlsx

description: Dataset for the paper "Echolocation at high intensity imposes metabolic costs on flying bats" <i>Nature Ecology & Evolution</i>
DOI: 10.6084/m9.figshare.12417110
title: Delivery of Annexin A5 to tumours rewires cancer cell apoptosis signalling to immunostimulatory secondary necrosis and boosts tumour-specific immunity

description: <b>Delivery of Annexin A5 to tumours rewires cancer cell apoptosis signalling to immunostimulatory secondary necrosis and boosts tumour-specific immunity</b> <br>
DOI: 10.6084/m9.figshare.12417110.v1
title: Delivery of Annexin A5 to tumours rewires cancer cell apoptosis signalling to immunostimulatory secondary necrosis and boosts tumour-specific immunity

description: <b>Delivery of Annexin A5 to tumours rewires cancer cell apoptosis signalling to immunostimulatory secondary necrosis and boosts tumour-specific immunity</b> <br>
DOI: 10.6084/m9.figshare.12416987
title: glycan_torsion_angles.nc

description: Torsion angles <i>phi</i> and <i>psi</i> are critical for determining the three dimensional structures of bio-molecules. Combinations of phi and psi torsion angles that produce clashes between atoms in the bio-molecule result in high energy, unlikely structures. <br><br>This model uses a Von Mises distribution to propose torsion angles for the structure of a glycan molecule (pdb id: 2LIQ), and a Potential to estimate the proposed structures energy. Said Potential is bound by Boltzman's law.<br>
DOI: 10.6084/m9.figshare.12416987.v2
title: glycan_torsion_angles.nc

description: Torsion angles <i>phi</i> and <i>psi</i> are critical for determining the three dimensional structures of bio-molecules. Combinations of phi and psi torsion angles that produce clashes between atoms in the bio-molecule result in high energy, unlikely structures. <br><br>This model uses a Von Mises distribution to propose torsion angles for the structure of a glycan molecule (pdb id: 2LIQ), and a Potential to estimate the proposed structures energy. Said Potential is bound by Boltzman's law.<br>
DOI: 10.6084/m9.figshare.12416987.v1
title: glycan_torsion_angles.nc

description: Torsion angles <i>phi</i> and <i>psi</i> are critical for determining the three dimensional structures of bio-molecules. Combinations of phi and psi torsion angles that produce clashes between atoms in the bio-molecule result in high energy, unlikely structures. <br><br>This model uses a Von Mises distribution to propose torsion angles for the structure of a glycan molecule (pdb id: 2LIQ), and a Potential to estimate the proposed structures energy. Said Potential is bound by Boltzman's law.<br>
DOI: 10.6084/m9.figshare.12416951
title: abalde et al. Supp. Mat. Table 1_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Complete list of conotoxins, hormones, and other proteins found in the 16 individuals of West African cones analyzed in Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416951.v1
title: abalde et al. Supp. Mat. Table 1_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Complete list of conotoxins, hormones, and other proteins found in the 16 individuals of West African cones analyzed in Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416939
title: abalde et al. Supp. Mat. Table 5_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: conotoxin superfamilies differentially expressed between genera and confirmed by the Krustal-Wallis test. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416945
title: abalde et al. Supp. Mat. File 2_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Alignments of misidentified conotoxin precursors clustered by the source of error. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416939.v1
title: abalde et al. Supp. Mat. Table 5_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: conotoxin superfamilies differentially expressed between genera and confirmed by the Krustal-Wallis test. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416930
title: abalde et al. Supp. Mat. Table 3_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Conotoxin precursors (and their probability) identified as present in the most recent common ancestor at different nodes in the phylogeny under maximum likelihood. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416933
title: abalde et al. Supp. Mat. Table 1_ES2 from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: New superfamilies of conotoxin precursors in Africonus and Varioconus. The signal domain, the cysteine framework, and main BLAST-P hits. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416936
title: abalde et al. Supp. Mat. File 1_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Alignments of conotoxin precursors and associated venom proteins of Africonus and Varioconus with homologues from other cone snail species. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416927
title: abalde et al. Supp. Mat. File 3_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Nucleotide sequences of conotoxin precursors and venom proteins in fasta file. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416930.v1
title: abalde et al. Supp. Mat. Table 3_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Conotoxin precursors (and their probability) identified as present in the most recent common ancestor at different nodes in the phylogeny under maximum likelihood. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416933.v1
title: abalde et al. Supp. Mat. Table 1_ES2 from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: New superfamilies of conotoxin precursors in Africonus and Varioconus. The signal domain, the cysteine framework, and main BLAST-P hits. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416936.v1
title: abalde et al. Supp. Mat. File 1_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Alignments of conotoxin precursors and associated venom proteins of Africonus and Varioconus with homologues from other cone snail species. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416945.v1
title: abalde et al. Supp. Mat. File 2_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Alignments of misidentified conotoxin precursors clustered by the source of error. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416927.v1
title: abalde et al. Supp. Mat. File 3_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Nucleotide sequences of conotoxin precursors and venom proteins in fasta file. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416921
title: abalde et al. Supp. Mat. Table 4_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Matrix of presence/ absence of conotoxins in the 16 specimens. Superfamilies inferred by maximum likelihood as present at internal nodes of the tree are in bold. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416921.v1
title: abalde et al. Supp. Mat. Table 4_ESM from Comparative transcriptomics of the venoms of continental and insular radiations of West African cones

description: Matrix of presence/ absence of conotoxins in the 16 specimens. Superfamilies inferred by maximum likelihood as present at internal nodes of the tree are in bold. Abalde et al. 2020. Proceedings of the Royal Society B primary research article (10.1098/rspb.2020.0794).
DOI: 10.6084/m9.figshare.12416906
title: Helio4Cast SIRCAT 1.0 for solar wind stream interaction regions and high speed streams (Wind, STEREO, MAVEN)

description: https://helioforecast.space/sircat
DOI: 10.6084/m9.figshare.12416906.v1
title: Helio4Cast SIRCAT 1.0

description: https://helioforecast.space/sircat
DOI: 10.5281/zenodo.3999540
title: Survey on Research Data Management at a Technical University

description: This dataset is based on a survey with researchers and engineers about data management practices. The survey was hosted via LimeSurvey. The data displayed here were retrieved directly from LimeSurvey. For analysis, we recoded the survey items as most of them were in a textual format (e.g. answer options such as "To a large extent" etc.). Here, only the original data are provided. Here, the answers and questions should be fairly self-explanatory, eliminating the need for extensive metadata. In total, 498 people started to fill in the survey, but only 259 completed the process.
DOI: 10.5281/zenodo.3999539
title: Survey on Research Data Management at a Technical University

description: This dataset is based on a survey with researchers and engineers about data management practices. The survey was hosted via LimeSurvey. The data displayed here were retrieved directly from LimeSurvey. For analysis, we recoded the survey items as most of them were in a textual format (e.g. answer options such as "To a large extent" etc.). Here, only the original data are provided. Here, the answers and questions should be fairly self-explanatory, eliminating the need for extensive metadata. In total, 498 people started to fill in the survey, but only 259 completed the process.
DOI: 10.6084/m9.figshare.12416573
title: Raw Avibase output and Supplementary Tables from Towards reconciliation of the four world bird lists: hotspots of disagreement in taxonomy of raptors

description: Avibase output, names with multiple concepts, concepts with multiple names, omitted genera, disagreements per family, disagreements per genus, countries
DOI: 10.6084/m9.figshare.12416537
title: Data from Multiple phenotypes conferred by a single insect symbiont are independent

description: Data from experiments (for review only; data will be submitted to Dryad if manuscript accepted and this file removed)
DOI: 10.6084/m9.figshare.12416537.v1
title: Data from Multiple phenotypes conferred by a single insect symbiont are independent

description: Data from experiments (for review only; data will be submitted to Dryad if manuscript accepted and this file removed)
DOI: 10.6084/m9.figshare.12416426
title: Kumar_et_al_2020_data

description: These data pertain to the main findings in the manuscript “Mechanistic determinants of effector-independent motor memory encoding” by Kumar et al. (2020). 1. Generalization across effectors, the behavioral manifestation of an effector-independent motor representation developed via (visuomotor) learning, is asymmetric. It occurs only from the left arm to the right, but not vice-versa.2. This left-to-right generalization is best predicted by the level of an implicit mechanism that evolves gradually during learning.3. Disrupting left but not right hemisphere posterior parietal cortex (PPC) impedes learning mediated by this mechanism, thus potentially blocking the encoding of the effector-independent representation.4. Generalization across effectors is therefore blocked if the left PPC is disrupted after learning has occurred.
DOI: 10.6084/m9.figshare.12416417
title: Data for "Heavy iron isotopic composition of iron meteorites explained by core crystallization"

description: The data file contains all new data produced in the publication "Heavy iron isotopic composition of iron meteorites explained by core crystallization" on Nature Geoscience by Peng Ni, Nancy L. Chabot, Caillin J. Ryan, and Anat Shahar. <br><br>Data are summarized in an Excel table containing two sheets, which are for the two supplementary tables in the original publication, respectively.<br>
DOI: 10.6084/m9.figshare.12416417.v1
title: Data for "Heavy iron isotopic composition of iron meteorites explained by core crystallization"

description: The data file contains all new data produced in the publication "Heavy iron isotopic composition of iron meteorites explained by core crystallization" on Nature Geoscience by Peng Ni, Nancy L. Chabot, Caillin J. Ryan, and Anat Shahar. <br><br>Data are summarized in an Excel table containing two sheets, which are for the two supplementary tables in the original publication, respectively.<br>
DOI: 10.6084/m9.figshare.12416363
title: Raw data.dta

description: The dependent variable of interest was self-medication of children. Independent variables included 15 measures of characteristics at the children, primary caregivers and household levels.
DOI: 10.6084/m9.figshare.12416366
title: 03_N250_T20_ICC050.Rdata

description: example data file<br>