cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28067543.v2
title: Single Cell and Bulk RNA Data of IBD patient

description: Fibrosis, a common complication in Crohn’s disease (CD), frequently leads to intestinal strictures resistant to biologic therapies, necessitating surgical intervention. This study explores the transcriptomic signature of fibrostenotic ileal CD to better understand the biological and cellular mechanisms driving intestinal fibrosis.Resected ileal specimens from nine CD patients undergoing surgery were analyzed using bulk transcriptomics and single-cell RNA sequencing (scRNA-seq). Differential gene expression and pathway enrichment analyses identified 81 differentially expressed genes (DEGs), with 64 up-regulated and 17 down-regulated in strictures compared to non-strictured margins. Up-regulated genes were linked to inflammation, matrix remodeling, adipogenesis, and cellular stress, while down-regulated genes were associated with epithelial barrier integrity. Machine learning and random forest models highlighted key predictive genes, including LY96, GREM1, and FGF2, which were validated via qPCR.scRNA-seq localized GREM1 to fibroblasts, while EHD2 and FGF2 were expressed in fibroblasts and endothelial cells. Endothelial cells in strictures showed unexpected expression of smooth muscle-related genes, suggesting a mechanistic link between endothelial cells and smooth muscle hyperplasia.This study provides a comprehensive characterization of CD-associated ileal strictures, identifying dysregulated pathways, potential biomarkers, and therapeutic targets for intestinal fibrosis.
DOI: 10.6084/m9.figshare.28329782.v2
title: 2_Supplementary Colony Count Data from Liquid Culture

description: <b>Evaluating the Impact of Over-the-Counter Aspirin on the Growth of Selected Intestinal Microbial Strains</b>
DOI: 10.6084/m9.figshare.29168057.v1
title: 补充数据

description: This document contains datasets for manuscript "Amphibole-Driven Magmatic Differentiation in Arc Systems: Insights from Zoned Intrusions of Southern Tibet", which has been submitted to the journal <i>Geochemistry, Geophysics, Geosystems</i>.
DOI: 10.17632/75dbjkmy9g
title: soybeans-noted-augumented-cut

description: The dataset contains 20,539 images of grains annotated with bounding boxes in YOLOv8 format. These images have been pre-processed and augmented to enhance model training for grain classification and defect detection. The following pre-processing steps were applied to each image:

 Auto-orientation of pixel data (with EXIF-orientation stripping)
 Resize to 600x600 pixels (stretching)
 Grayscale conversion (CRT phosphor)
 Auto-contrast via histogram equalization

Additionally, the following augmentation techniques were applied to create three versions of each source image:

 50% probability of horizontal flip
 50% probability of vertical flip
 Random rotation between -15 and +15 degrees
 Random brightness adjustment between -15% and +15%

This dataset was created to support computer vision models by providing a diverse range of augmented data for better model generalization and accuracy. The images are in JPG format and are annotated to identify grain defects such as moldy, burnt, pecky, scorched, greenish, and good grains.

Format: YOLOv8 bounding box annotations.
Image Size: Resized to 600x600 pixels.
Number of Images: 20,539 images (with augmentations generating additional versions of each source image).
DOI: 10.17632/7gpr9xtdpc
title: Pre-evaluated chess position and its features

description: One of the hypothesis underlying this project is that the evaluation of chess positions can be improved by systematically analyzing various board features, such as material balance, mobility, central control, king safety, and piece connectivity. These features are extracted from 200,000 chess positions represented in the FEN (Forsyth–Edwards Notation) format, with each position evaluated using predefined heuristics.

The dataset consists of 200,000 chess positions, each represented by a FEN string along with a pre-calculated evaluation. The FEN strings describe the positions of all pieces on the board, while the evaluations are numerical values indicating the relative advantage of either side. The data was gathered from real games from https://github.com/r2dev2/ChessDataContributor

To interpret this data, several metrics are computed for each position:

Material count: This measures the material difference between the two sides by assigning weights to different pieces (e.g., pawns, knights, bishops, rooks, and queens). Positive values indicate a material advantage for white, while negative values favor black.
Total material: This metric sums the total material on the board, regardless of color.
Mobility: This reflects the number of legal moves available to each side.
Central control: Central squares attacks (e4, d4, e5, d5) are critical in chess.
King safety: This examines the vulnerability of each king by evaluating whether the squares surrounding the king are under attack.
Connectivity: This assesses how well the pieces support each other.
Position of the pieces: the squares where they are and the average evaluation when they are on these squares, creating a sort of heat map.
There is also a graph representation of the raw board, which indicates the list of squares attacked by another square. Depending on the piece on the square and the overall board configuration, a square can "point" to many others, which allow us to calculate the above features.

These features are then stored in a relational database for future analysis, enabling more advanced techniques such as an evaluation function to predict how good a position is.

The notable findings from this dataset suggest that a holistic approach to chess evaluation that considers both static (material) and dynamic (mobility, connectivity) factors provides a more comprehensive picture of a position.

The data can be interpreted by analyzing the relationships between these metrics and the final evaluations. For example, a high material count often correlates with a favorable evaluation, but in some cases, superior king safety or central control can compensate for a material deficit.

In conclusion, this study provides valuable insights into the evaluation of chess positions by analyzing key positional features.
DOI: 10.6084/m9.figshare.11215067.v1
title: CAAV_database

description: The Chieti Affective Action Video (CAAV) is a new database designed for the experimental study of emotions in psychology. The main goal of the CAAV is to provide a wide range of standardized stimuli based on two emotional dimensions: valence and arousal. The CAAV is the first database to present emotional stimuli through videos of actions filmed and developed specifically for experimental research.
DOI: 10.6084/m9.figshare.25592013.v1
title: Data for the genome-based phylogenetic trees of Sporidiobolales

description: Data for the genome-based phylogenetic trees of Sporidiobolales.Sequences, executed commands and result files are included.<br>
DOI: 10.6084/m9.figshare.3412312.v1
title: Muspelheim data

description: Participants listened passively to a story roughly 23 minutes in length while looking at a fixation star. Subjects were instructed to blink as little as possible, but that it was better to blink than to tense up from discomfort. After the auditory presentation, test subjects filled out a short comprehension questionnaire to control for attentiveness.<br><br>The story recording, a slightly modified version of the German novella "Der Kuli Klimgun" by Max Dauthendey read by a trained male native speaker of German, was previously used in an fMRI study by Whitney et al. (2009).<br>For each word in the transcribed text, a lingusitically trained native speaker of German provided an annotation for the prominence features "animacy", "morphological case marking" (morphological ambiguity was not resolved even if syntactically unambiguous), "definiteness" (i.e. whether the definite article "the" was present), "humanness" and "position" (initial or not for nominal arguments). Tags were placed at the position that the prominence information was "new"; an automated process created a duplicate tagging where the new information was repeated for the rest of its constituent phrase (e.g. copying case-marked from the determiner to the head noun). Absolute ("corpus") frequency estimates were extracted programmatically from the Leipziger Wortschatz(http://wortschatz.informatik.uni-leipzig.de/) using the Python 3 update to libleipzig-python (https://github.com/palday/libleipzig-python). Relative frequencies were calculated as the ratio of orthographic tokens to orthographic types. <br><br><br>EEG data were recorded from 27 Ag/AgCl electrodes fixed in an elastic cap (Easycap GmbH, Herrsching, Germany) using a BrainAmp amplifier (Brain Products GmbH, Gilching, Germany). Recordings were sampled at 500 Hz, referenced to the left mastoid and re-referenced to linked mastoids offline.<br>
DOI: 10.6084/m9.figshare.19799713.v1
title: A new species of Delma Gray 1831 (Squamata: Pygopodidae) from the Hunter Valley and Liverpool Plains of New South Wales

description: Supplementary data for sampling details of specimens used for molecular and morphological analysis in the description of a new species of Delma from the Hunter Valley in New South Wales.
DOI: 10.6084/m9.figshare.25515331.v1
title: GWAS summary statistics for ALPS-index

description: Mean, left, and right ALPS-index
DOI: 10.6084/m9.figshare.25718730.v1
title: Table 1. Study characteristics.docx

description: Study characteristics of the included articles with caregiver and child information
DOI: 10.6084/m9.figshare.27934563.v1
title: Pre-and Post-test Physics Achievement Test Results: Analysis of Performance and Problem-solving 5 Heller and Heller Steps

description: This dataset contains the data collected in 2024 from Rwandan secondary school grade 11 physics students. Pre-and Post-test Physics Achievement Test Results: Analysis of Performance and Problem-solving 5 Heller and Heller Steps. The first sheet has a test administered, the second performance test, and third problem-solving steps analysis.
DOI: 10.17632/2yy6wgfctd
title: Data for: A GIGANTIC PARAVIAN (THEROPODA; MANIRAPTORA) FROM JAMES ROSS ISLAND, ANTARCTICA AND THE BIOSTRATIGRAPHY OF UPPER CRETACEOUS, ANTARCTIC DINOSAURS

description: A character matrix of 161 taxa and 905 characters. This is a slight modification to the matrix in Gianechini et al. (2018) with the addition of the taxon described in Ely and Case (2018).
DOI: 10.17632/9gt4jpb9zj
title: Data for: Experimental investigation of first-row transition elements partitioning between olivine and silicate melt: Implications for lunar basalt formation

description: （1）Raw data from experiments and analyses for all figures and（2）a supplementary Table S1 in the manuscript by Jing et al submitted to Geochimica et Cosmochimica Acta as "Experimental investigation of first-row transition elements partitioning between olivine and silicate melt: Implications for lunar basalt formation".
DOI: 10.6084/m9.figshare.11313005.v1
title: Private Self-consciousness, Self-reflection, Insight and Alcohol Consumption Among Young People and Adults

description: Abstract Private self-consciousness is a relevant metacognitive capacity in the self-regulation process, with possible implications in alcohol consumption. This research verified the influence of self-reflection and insight, dimensions of private self-consciousness, on drinking behavior. A total of 523 Brazilians, aged from 20 to 39 years old, participated in a survey by answering the Self-Reflection and Insight Scale and the AUDIT test. The results showed that women have higher levels of self-reflection, whereas men have higher levels of insight. With regard to alcohol consumption, young people drink at higher risk levels than adults. Self-reflection and insight were negatively correlated with alcohol consumption. Age and gender differences in the intensity of the correlation between variables and the influence of environmental factors on the regulation of drinking behavior are discussed.
DOI: 10.6084/m9.figshare.12732170.v2
title: Combined seismic and geodetic analysis before, during and after the 2018 Mt. Etna eruption

description: GNSS Time series and seismic data
DOI: 10.6084/m9.figshare.14186663.v1
title: Code and data from Dallas and Elderd 2021 "Mean-variance scaling relationships in commercial sex work networks"

description: ## Citation<br><br>Code and data to reproduce the analyses from<br><br>&gt; Dallas, T and B Elderd. 2021. Mean-variance scaling relationships in commercial sex work networks. <br><br><br>These data are from The Erotic Review, a website of putative encounters between sex workers and clients. We have anonymized the data, using a unique 15 character string to identify sex workers and clients. We also do not release the code used to scrape The Erotic Review website, out of privacy concerns. <br><br><br><br><br><br>## Compiling the project<br><br>To compile the R markdown, the following terminal command can be issued from the directory where the files are all located.<br><br><br>```<br>Rscript -e 'install.packages(c("plyr","dplyr","igraph","viridis","rmarkdown")'<br>Rscript -e 'rmarkdown::render("analysis.Rmd", output_format="pdf_document")'<br><br>```<br><br><br><br>
DOI: 10.6084/m9.figshare.26048218.v1
title: Research data supporting "Controllable p- and n-type behaviours in emissive perovskite semiconductors"

description: Research data supporting "Controllable p- and n-type behaviours in emissive perovskite semiconductors".
DOI: 10.6084/m9.figshare.26345296.v1
title: Supplementary file 2 of Jimi (2024)

description: References of Japanese polychaetes
DOI: 10.6084/m9.figshare.29084372.v1
title: <b>Table1. </b>Required Competencies Before and After COVID-19

description: The purpose of this study was to understand the employers' perspectives regarding the required competencies of marketing graduates post-COVID-19 era and how Universities can improve the teaching of Marketing post-COVID-19.
DOI: 10.17632/7ps8fd94z5
title: Data for: Are Early Triassic extinction events associated with mercury anomalies? A reassessment of the Smithian-Spathian boundary extinction.

description: Geochemical data through the Wallenbergfjellet section, Vikinghøgda Formation, Spitsbergen. Hand-held XRF (Mo, V, Fe, Al, Zr/Rb), d13C, Hg, TOC and RockEval (HI and OI). Data in the Past format, http://folk.uio.no/ohammer/past, also readable as a tab-separated text file.
DOI: 10.17632/8tpfrpzh5m
title: Data for: The association between resilience, perceived organizational support and fatigue among Chinese doctors: a cross-sectional study

description: The study protocol was in accordance with the ethical standards and was approved by the Ethics Committee of China Medical University. Written informed consent was obtained from each participant. Information collected from all participants was kept confidential and anonymous.
DOI: 10.17632/dh25jzwxf8
title: Helicobacter pylori

description: Background and objectives: Peptic ulcer disease, chronic gastritis, and stomach cancer are all caused by H.
pylori. The most notable drug for the treatment is the antibiotic clarithromycin, which is currently the
drug of choice. H. pylori clarithromycin resistance has been associated with point mutations in
23srRNA, the most prominent of which are A2143 and A2144G. In H. pylori bacteria, methylase synthesis,
macrolide-inactivating enzyme activity, and active efflux have all been found to be resistance mechanisms. The goal of the study is to determine how resistant H. pylori is to clarithromycin and what the minimum inhibitory concentration is for various antimicrobials. Furthermore, gastro-endoscopy will be
performed on Iraqi patients to detect the presence of A2143G and A2144G point mutations in
Helicobacter pylori infections, as diagnosed from the pyloric region and other anatomical regions.
Methods: One hundred fifteen samples were collected from patients strongly suspected of H. pylori infection presented for upper gastrointestinal endoscopy at Ramadi Teaching Hospitals and Private Clinics for
the period from January 2020 until February 2021. Specimens were cultured on brain heart infusion agar
containing various antibiotics and were incubated at 37 C under microaerophilic conditions. For identification of H. pylori, isolates of the biochemical tests and RT-PCR assay were applied. The Epsilometer test
was used in the antibiotic susceptibility testing as dependent on the CLSI standard. The Restriction
Fragment Length Polymorphism technique was used to determine point mutations.
Results: In total, 55 (47.8%) Helicobacter pylori isolates were cultured from the 115 biopsy specimens,
among which 16 (29.1%), 38 (69.1%), 20 (36.4%), and 40 (72.7%) revealed some degree of resistance to
levofloxacin, clarithromycin, ciprofloxacin, and metronidazole, respectively. The frequency of A2144G
and A2143 point mutations were 23 (60.5%) and 19 (50%), respectively.
Conclusions: According to our results, Helicobacter pylori showed high resistance to clarithromycin. Our
results demonstrate the requirement for antibiotic susceptibility testing and molecular methods in
selecting drug regimens.
DOI: 10.17632/jv8s678prf
title: Solar Eclipse data

description: This data includes, solar eclipse path that occurred on 26 December 2019 including obscuration and magnitude (Fig.1). It includes AWS data of temperature, relative humidity, wind speed and wind direction (Fig.2). It includes surface, BC and PM concentrations obtained from Aethalometer and PM sensors (Fig.3). It incudes BC and PM concentrations obtained from AE-31 and PM sensors on-board Tethered balloon (Fig.4). It incudes PM concentrations obtained from PM sensors on-board Drone (Fig.5). It includes Ceilometer data for ABL altitude and radiosonde data (Fig.6)
DOI: 10.6084/m9.figshare.25858075.v1
title: Supplementary Material for: Assessment of Macrovascular Invasion in Advanced Hepatocellular Carcinoma: Clinical Implications and Treatment Outcomes with Systemic Therapy

description: Introduction: Macrovascular invasion (MVI) is a strong prognostic factor for advanced hepatocellular carcinoma (HCC). The current criteria for radiological assessment are unclear in evaluating the impact of MVI on systemic therapy. In this study, we standardized the assessment of MVI and validated its clinical relevance. 
Methods: Clinical data were collected from patients with advanced HCC and MVI who received first-line systemic therapy at four medical centers in Japan. First, we used macrovascular invasion progression disease (MVI-PD) to track MVI progression, and Response Evaluation Criteria in Solid Tumours version 1.1 progression disease (RECIST v1.1-PD) to evaluate tumor enlargement other than MVI and the appearance of new lesions. Next, we assessed the prognostic value of MVI-PD and RECIST v1.1-PD.
Results: Of the 207 advanced HCC patients with MVI, 189 received appropriate imaging evaluation. 40 (21.2%) patients had MVI-PD and RECIST v1.1-PD, 51 (27.0%) had prior MVI-PD, and 61 (32.3%) had prior RECIST v1.1-PD. In a landmark analysis, the prognosis of 163 patients who survived more than three months was analyzed based on the assessment of imaging response during the first three months. The median overall survival (OS) was 5.4 months in those who had MVI-PD and RECIST v1.1-PD, 7.4 months in those who had RECIST v1.1-PD only, 7.2 months in those who had MVI-PD only, and 19.7 months in patients who had neither (p&lt;0.001). The correlation coefficients between progression-free survival and OS in patients with appropriate imaging assessments were similar for MVI-PD (0.515) and RECIST v1.1-PD (0.498).
Conclusion: Our findings demonstrate the link between MVI progression and poor OS in systemic therapy for advanced HCC, emphasizing the importance of an accurate method for assessing MVI progression.
DOI: 10.6084/m9.figshare.29035976.v1
title: IMPACT OF BUILDING INFORMATION MODELLING IN IMPROVING OCCUPATIONAL HEALTH AND SAFETY IN CONSTRUCTION.csv

description: Building Information Modelling (BIM) holds promise for enhancing Occupational Health and Safety (OHS) in construction, yet its adoption in Nigeria remains limited by technological, regulatory, and organizational constraints. This study aimed to evaluate the potential impact of BIM on OHS during construction projects in Nigeria and to identify the barriers and enablers influencing its uptake.
DOI: 10.6084/m9.figshare.3189673.v1
title: HMBEC morphology images plate 1 replicate A

description: HMBEC cells were transfected with siRNAs and underwent migration<br>
DOI: 10.6084/m9.figshare.4585267.v1
title: DSC raw data from Fabrication and characterization of electrospun poly(e-caprolactone) fibrous membrane with antibacterial functionality

description: This research study is mainly targeted on fabrication and characterization of antibacterial poly(e-caprolactone) (PCL) based fibrous membrane containing silver chloride particles. Micro/nano fibres were produced by electrospinning and characterized with TGA, DSC, SEM and mechanical analysis. It was found that addition of silver particles slightly reduced onset of thermal degradation and increased crystallization temperature of neat PCL. Silver-loaded samples exhibited higher tensile stress and lower strain revealing that the particles behaved as reinforcing agent. Moreover, addition of silver chloride resulted in beaded surface texture and formation of finer fibres as opposed to the neat. Antibacterial properties were tested against Gram-negative and Gram-positive bacteria and remarkable biocidal functionalities were obtained with about six logs reduction of <i>Staphylococcus aureus</i> and <i>Escherichia coli</i> O157:H7.
DOI: 10.15468/dl.59kgem
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.2112 -0.773,8.9648 -2.2147,8.9648 1.4824,8.8631 1.3007,8.8278 -0.0747,8.2974 -0.3332,8.2112 -0.773))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013254-250525065834625/datasets/export for details.
DOI: 10.17632/2yr5gg4z3m
title: Data for: Water, Energy and Food Nexus of Indus Water Treaty: Water Governance

description: Supplementary Data
DOI: 10.17632/jkysyxrbcr
title: Data for: Gamma-Irradiation-Induced Reduction of Aqueous Se(VI) by Natural Pyrite

description: Irradiation; Pyrite; Se(VI); Se0; Radical
DOI: 10.17632/nkhbn88v7g
title: Inherited PD-1 deficiency: RNA sequencing (RNASeq) of sorted double-negative T cells and monocytes

description: Double-negative (DN) αβ T cells (αβTCR+CD3+CD4-CD8-CD19-) and monocytes (CD3-CD14+/dimCD19-CD56-) were sorted from cryopreserved peripheral blood mononuclear cells (PBMCs). Total RNA was subjected to the library preparation using the SMART-Seq v4 Ultra Low Input RNA Kit with 12-16 cycles of amplification. The cDNA was further amplified using the KAPA Hyper Prep Kit with additional eight PCR cycles. Samples were barcoded and analyzed on a HiSeq 4000 in paired-end 2x100 bp mode, with the HiSeq 3000/4000 SBS Kit. The FASTQ files were first inspected with fastqc to ensure that the raw data were of high quality. The FASTQ reads of each sample were then aligned to the GENCODE human reference genome GRCh38.p13 with STAR aligner ver. 2.7, and the alignment quality of each BAM file was evaluated with RSeQC. Reads were quantified with featureCounts ver. 1.6, to generate gene-level feature counts from the read alignment. Reads were aggregated by gene symbol. Genes on the X or Y chromosome were excluded from the differential expression analysis.