cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4003878
title: Table S2 - Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates

description: This excel file is part of the supplementary material of this work: Shearn, Rylan, Emilie Lecompte, Sylvain Mousset, Corinne Régis, Simon Penel, Guillaume Douay, Brigitte Crouau-Roy, and Gabriel AB Marais. "Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates." <em>bioRxiv</em> (2019): 445072.
description: {"references": ["Shearn, Rylan, Emilie Lecompte, Sylvain Mousset, Corinne R\u00e9gis, Simon Penel, Guillaume Douay, Brigitte Crouau-Roy, and Gabriel AB Marais. \"Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates.\" bioRxiv (2019): 445072."]}
DOI: 10.5281/zenodo.4003877
title: Table S2 - Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates

description: This excel file is part of the supplementary material of this work: Shearn, Rylan, Emilie Lecompte, Sylvain Mousset, Corinne Régis, Simon Penel, Guillaume Douay, Brigitte Crouau-Roy, and Gabriel AB Marais. "Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates." <em>bioRxiv</em> (2019): 445072.
description: {"references": ["Shearn, Rylan, Emilie Lecompte, Sylvain Mousset, Corinne R\u00e9gis, Simon Penel, Guillaume Douay, Brigitte Crouau-Roy, and Gabriel AB Marais. \"Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates.\" bioRxiv (2019): 445072."]}
DOI: 10.6084/m9.figshare.7981175
title: Additional file 6: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S6. Overview of all QTL and their significant effects on 14 traits studied in 25 families of the HEB-25 population. (XLSX 280 kb)
DOI: 10.6084/m9.figshare.7981175.v1
title: Additional file 6: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S6. Overview of all QTL and their significant effects on 14 traits studied in 25 families of the HEB-25 population. (XLSX 280 kb)
DOI: 10.6084/m9.figshare.7981151
title: Additional file 3: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S3. P values of all terms in the models for 14 traits across 3 years. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7981157
title: Additional file 4: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S4. Summary of simple statistics for the drought stress experiment from 2014 to 2016. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7981151.v1
title: Additional file 3: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S3. P values of all terms in the models for 14 traits across 3 years. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7981157.v1
title: Additional file 4: of Genome-wide association of barley plant growth under drought stress using a nested association mapping population

description: Table S4. Summary of simple statistics for the drought stress experiment from 2014 to 2016. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.12874887.v12
title: Additional file of Novel transposable elements from Anopheles gambiae

description: Additional file of Novel transposable elements from Anopheles gambiae
DOI: 10.6084/m9.figshare.12874887.v9
title: Additional file of Novel transposable elements from Anopheles gambiae

description: Additional file of Novel transposable elements from Anopheles gambiae
DOI: 10.6084/m9.figshare.12874887.v11
title: Additional file of Novel transposable elements from Anopheles gambiae

description: Additional file of Novel transposable elements from Anopheles gambiae
DOI: 10.6084/m9.figshare.12874887.v10
title: Additional file of Novel transposable elements from Anopheles gambiae

description: Additional file of Novel transposable elements from Anopheles gambiae
DOI: 10.6084/m9.figshare.7981025
title: Additional file 2: of Complex malaria epidemiology in an international border area between Brazil and French Guiana: challenges for elimination

description: Epidemiological database of the municipality of Oiapoque- Ap Brazil. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7981025.v1
title: Additional file 2: of Complex malaria epidemiology in an international border area between Brazil and French Guiana: challenges for elimination

description: Epidemiological database of the municipality of Oiapoque- Ap Brazil. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7980971
title: Additional file 3: of The judgement of biases included in the category “other bias” in Cochrane systematic reviews of interventions: a systematic survey

description: Table S3. Categories of explanations of other bias in analyzed Cochrane risk of bias tables. In the 524 analyzed Cochrane reviews that described various sources of other bias, there were 5762 different supporting explanations for judgments of other bias that we categorized into 31 categories. The main text describes the most common categories of explanations, while all the types of explanations is presented in Table S3. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7980962
title: Additional file 9: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distributions of differentially expressed genes of the FLOR-ID database in the clusters. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.7980971.v1
title: Additional file 3: of The judgement of biases included in the category “other bias” in Cochrane systematic reviews of interventions: a systematic survey

description: Table S3. Categories of explanations of other bias in analyzed Cochrane risk of bias tables. In the 524 analyzed Cochrane reviews that described various sources of other bias, there were 5762 different supporting explanations for judgments of other bias that we categorized into 31 categories. The main text describes the most common categories of explanations, while all the types of explanations is presented in Table S3. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7980962.v1
title: Additional file 9: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distributions of differentially expressed genes of the FLOR-ID database in the clusters. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.7980950
title: Additional file 7: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Best enriched biological process (BP) GO terms for the 24 clusters. The best BP GO term was extracted with its FDR from each SEA analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7980947
title: Additional file 6: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of genes per cluster. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.7980938
title: Additional file 5: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of lncTUs. (XLSX 639 kb)
DOI: 10.6084/m9.figshare.7980950.v1
title: Additional file 7: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Best enriched biological process (BP) GO terms for the 24 clusters. The best BP GO term was extracted with its FDR from each SEA analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7980938.v1
title: Additional file 5: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of lncTUs. (XLSX 639 kb)
DOI: 10.6084/m9.figshare.7980947.v1
title: Additional file 6: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of genes per cluster. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.7980920
title: Additional file 23: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Information in PLACE and AGRIS databases on the identified motifs. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7980914
title: Additional file 22: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of oligonucleotides. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7980920.v1
title: Additional file 23: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Information in PLACE and AGRIS databases on the identified motifs. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7980914.v1
title: Additional file 22: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: List of oligonucleotides. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7980908
title: Additional file 21: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of the TFBFs in the regions of the lncTUs. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7980908.v1
title: Additional file 21: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of the TFBFs in the regions of the lncTUs. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7980890
title: Additional file 19: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Expression of lncTUs and their NATs. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7980878
title: Additional file 18: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of differentially expressed genes associated with chromatin biology. CR: chromatin remodeling. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7980890.v1
title: Additional file 19: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Expression of lncTUs and their NATs. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7980878.v1
title: Additional file 18: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of differentially expressed genes associated with chromatin biology. CR: chromatin remodeling. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7980866
title: Additional file 17: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Differentially expressed genes associated with chromatin biology. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7980866.v1
title: Additional file 17: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Differentially expressed genes associated with chromatin biology. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7980854
title: Additional file 15: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: TFs from the FLOR-ID. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980854.v1
title: Additional file 15: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: TFs from the FLOR-ID. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980839
title: Additional file 13: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Motifs identified with the PLM algorithm. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.7980845
title: Additional file 14: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of the TFs among the clusters. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7980839.v1
title: Additional file 13: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Motifs identified with the PLM algorithm. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.7980845.v1
title: Additional file 14: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Distribution of the TFs among the clusters. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7980830
title: Additional file 12: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Hormone-related genes involved in several hormonal pathways in the clusters. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7980830.v1
title: Additional file 12: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Hormone-related genes involved in several hormonal pathways in the clusters. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7980809
title: Additional file 10: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Hormone-related genes supported by genetic evidence in clusters. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7980809.v1
title: Additional file 10: of Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction

description: Hormone-related genes supported by genetic evidence in clusters. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7980776
title: Additional file 5: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Information of the primers used in this study. (XLSX 11 KB)
DOI: 10.6084/m9.figshare.7980779
title: Additional file 6: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Information of LE orthologs used in multiple sequence alignment. (XLSX 9 KB)
DOI: 10.6084/m9.figshare.7980773
title: Additional file 2: of Melatonin treatment of pigs with acute pancreatitis reduces inflammatory reaction of pancreatic tissue and enhances fitness score of pigs: experimental research

description: Results of blood test of the animals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980776.v1
title: Additional file 5: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Information of the primers used in this study. (XLSX 11 KB)
DOI: 10.6084/m9.figshare.7980779.v1
title: Additional file 6: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Information of LE orthologs used in multiple sequence alignment. (XLSX 9 KB)
DOI: 10.6084/m9.figshare.7980764
title: Additional file 1: of Melatonin treatment of pigs with acute pancreatitis reduces inflammatory reaction of pancreatic tissue and enhances fitness score of pigs: experimental research

description: Intraoperative hemodynamic data of the pigs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7980773.v1
title: Additional file 2: of Melatonin treatment of pigs with acute pancreatitis reduces inflammatory reaction of pancreatic tissue and enhances fitness score of pigs: experimental research

description: Results of blood test of the animals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980749
title: Additional file 1: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Table S1. Agronomic traits of HC three giant embryo mutants. DTH, days to heading; CL, culm length; PL, panicle length; PN, panicle number; SPP, spikelet per panicle; SF, spikelet fertility; GL, grain length; GW, grain width; LWR, length-width ratio. The means followed by lowercase letters are significantly different (pâ
DOI: 10.6084/m9.figshare.7980764.v1
title: Additional file 1: of Melatonin treatment of pigs with acute pancreatitis reduces inflammatory reaction of pancreatic tissue and enhances fitness score of pigs: experimental research

description: Intraoperative hemodynamic data of the pigs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7980749.v1
title: Additional file 1: of Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.)

description: Table S1. Agronomic traits of HC three giant embryo mutants. DTH, days to heading; CL, culm length; PL, panicle length; PN, panicle number; SPP, spikelet per panicle; SF, spikelet fertility; GL, grain length; GW, grain width; LWR, length-width ratio. The means followed by lowercase letters are significantly different (pâ
DOI: 10.6084/m9.figshare.7980695
title: Additional file 5: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S3. Excel file containing database of all genes identified as belonging to a secondary metabolite gene cluster. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.7980695.v1
title: Additional file 5: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S3. Excel file containing database of all genes identified as belonging to a secondary metabolite gene cluster. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.7980677
title: Additional file 2: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S1. Excel file with log2fold changes and p-adjust values for all genes in the T. virens Gv29â 8 genome at Recognition and Colonization and calculated FPKM values. (XLSX 5288 kb)
DOI: 10.6084/m9.figshare.7980683
title: Additional file 3: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S2. Excel file listing the log2fold changes and p-adjust values for all significant DEGs at Recognition and Colonization, with assigned category and function notes. (XLSX 95 kb)
DOI: 10.6084/m9.figshare.7980677.v1
title: Additional file 2: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S1. Excel file with log2fold changes and p-adjust values for all genes in the T. virens Gv29â 8 genome at Recognition and Colonization and calculated FPKM values. (XLSX 5288 kb)
DOI: 10.6084/m9.figshare.7980683.v1
title: Additional file 3: of Differential expression analysis of Trichoderma virens RNA reveals a dynamic transcriptome during colonization of Zea mays roots

description: Data file S2. Excel file listing the log2fold changes and p-adjust values for all significant DEGs at Recognition and Colonization, with assigned category and function notes. (XLSX 95 kb)
DOI: 10.6084/m9.figshare.7980617
title: MOESM2 of Introgression between Anopheles gambiae and Anopheles coluzzii in Burkina Faso and its associations with kdr resistance and Plasmodium infection

description: Additional file 2. Raw genotyping data of the collected mosquitoes around Nouna, BF.
DOI: 10.6084/m9.figshare.7980614
title: MOESM1 of Introgression between Anopheles gambiae and Anopheles coluzzii in Burkina Faso and its associations with kdr resistance and Plasmodium infection

description: Additional file 1. SNP information on the DIS assay.
DOI: 10.6084/m9.figshare.7980617.v1
title: MOESM2 of Introgression between Anopheles gambiae and Anopheles coluzzii in Burkina Faso and its associations with kdr resistance and Plasmodium infection

description: Additional file 2. Raw genotyping data of the collected mosquitoes around Nouna, BF.
DOI: 10.6084/m9.figshare.7980593
title: Additional file 9: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S6. Homoeologs reconstruction. Number of copies reconstructed among the 58 genes (Additional file 6: Table S4) of â Supplementary File 2â in the de novo assembly. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7980614.v1
title: MOESM1 of Introgression between Anopheles gambiae and Anopheles coluzzii in Burkina Faso and its associations with kdr resistance and Plasmodium infection

description: Additional file 1. SNP information on the DIS assay.
DOI: 10.6084/m9.figshare.7980611
title: Additional file 2: of Quality assurance of non-coplanar, volumetric-modulated arc therapy employing a C-arm linear accelerator, featuring continuous patient couch rotation

description: The dataset supporting our findings. (XLSX 3027 kb)
DOI: 10.6084/m9.figshare.7980584
title: Additional file 8: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S5. BLASTn results between the homoeolog genes of T. aestivum chromosome 3. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7980593.v1
title: Additional file 9: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S6. Homoeologs reconstruction. Number of copies reconstructed among the 58 genes (Additional file 6: Table S4) of â Supplementary File 2â in the de novo assembly. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7980611.v1
title: Additional file 2: of Quality assurance of non-coplanar, volumetric-modulated arc therapy employing a C-arm linear accelerator, featuring continuous patient couch rotation

description: The dataset supporting our findings. (XLSX 3027 kb)
DOI: 10.6084/m9.figshare.7980578
title: Additional file 7: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S4. List of the 58 wheat genes from chromosome 3 with the relative accession numbers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980584.v1
title: Additional file 8: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S5. BLASTn results between the homoeolog genes of T. aestivum chromosome 3. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7980578.v1
title: Additional file 7: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S4. List of the 58 wheat genes from chromosome 3 with the relative accession numbers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7980539
title: Additional file 2: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S2. Summary of RNA sequencing for durum wheat cv. Svevo cDNA libraries. Two libraries, named “a” and “b”, were constructed for each tissue. They differ on fragment size recovered by gel-electrophoresis. For each library, tissue, fragment size, number of raw reads, total base pairs and average read length are reported. Average read length is proportionally reflecting the amount of 150 bp sequencing and 100 bp sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7980539.v1
title: Additional file 2: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S2. Summary of RNA sequencing for durum wheat cv. Svevo cDNA libraries. Two libraries, named “a” and “b”, were constructed for each tissue. They differ on fragment size recovered by gel-electrophoresis. For each library, tissue, fragment size, number of raw reads, total base pairs and average read length are reported. Average read length is proportionally reflecting the amount of 150 bp sequencing and 100 bp sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7980545
title: Additional file 3: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S3. Detailed report of the de novo assemblies. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7980533
title: Additional file 1: of Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

description: Table S1. Durum wheat accessions description and RNA-Seq data. Accession name, pedigree, accession feature and the constitutor for the 13 varieties used for RNA sequencing and SNP discovery are reported along with the associated sequencing yields for each of the three sampled tissues. (XLSX 11 kb)