cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gm329
title: CCDC 2282470: Experimental Crystal Structure Determination

description: Related Article: N. Sacharczuk, A. Olejniczak, M. Bujak, K.F. Dziubek, A. Katrusiak, M. Podsiadło|2024|IUCrJ|11|57|doi:10.1107/S2052252523009995
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gm33b
title: CCDC 2282471: Experimental Crystal Structure Determination

description: Related Article: N. Sacharczuk, A. Olejniczak, M. Bujak, K.F. Dziubek, A. Katrusiak, M. Podsiadło|2024|IUCrJ|11|57|doi:10.1107/S2052252523009995
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gm34c
title: CCDC 2282472: Experimental Crystal Structure Determination

description: Related Article: N. Sacharczuk, A. Olejniczak, M. Bujak, K.F. Dziubek, A. Katrusiak, M. Podsiadło|2024|IUCrJ|11|57|doi:10.1107/S2052252523009995
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gm35d
title: CCDC 2282473: Experimental Crystal Structure Determination

description: Related Article: N. Sacharczuk, A. Olejniczak, M. Bujak, K.F. Dziubek, A. Katrusiak, M. Podsiadło|2024|IUCrJ|11|57|doi:10.1107/S2052252523009995
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gm36f
title: CCDC 2282474: Experimental Crystal Structure Determination

description: Related Article: N. Sacharczuk, A. Olejniczak, M. Bujak, K.F. Dziubek, A. Katrusiak, M. Podsiadło|2024|IUCrJ|11|57|doi:10.1107/S2052252523009995
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hk3nv
title: CCDC 2310357: Experimental Crystal Structure Determination

description: Related Article: Dhrubajyoti Majumdar, Sourav Roy, Jessica Elizabeth Philip, Burak Tüzün, Suman Hazra|2024|Inorg.Chem.Commun.|160|111933|doi:10.1016/j.inoche.2023.111933
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hcvmc
title: CCDC 2305303: Experimental Crystal Structure Determination

description: Related Article: Nighat Yousuf, Yanping Ma, Qaiser Mahmood, Wenjuan Zhang, Yizhou Wang, Hassan Saeed, Wen-Hua Sun|2024|Dalton Trans.|53|753|doi:10.1039/D3DT03674J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21227/p6ds-f960
title: cross-phone calibration dataset

description: This is the dataset used in the paper "Cross-phone calibration for smartphone-based crowdsourced measurement of E-field strength of mobile downlink signals using transfer learning". The dataset is mainly composed of RSRP and E-field strength data collected using smart phones and the Spectrum Analyzer with isotropic antenna. The file contains two subdirectories, one for the raw data after removing the outliers and the other for the preprocessed feature dataset. See the Readme file in the folder for details. 1. d1, d2, d3, d4, and d5 denote day of the collected data.2. 2ab, ca1, and ef5 are the code of the phone3. 1850 and 100 are the Earfcn.
DOI: 10.5281/zenodo.10461470
title: 20231212_Bigelow_Round1_Round2_1_60

description: Cyanobacteria profiling
DOI: 10.5281/zenodo.10461471
title: 20231212_Bigelow_Round1_Round2_1_60

description: Cyanobacteria profiling
DOI: 10.6084/m9.figshare.24943185
title: Apiotrichum vinum BR3 phylogenetic tree

description: Phylogenetic tree for Apiotrichum vinum sp.nov. accommodation. Maximum likelihood tree built from concatenated LSU and ITS sequences. The tree with the highest log likelihood (-3722.82) is shown. Bootstrap support values &gt; 60 % (from 1000 replicates) are shown at the nodes. Phylogenetic analysis was conducted in MEGA v. 11 (Takamura et al., 2021) using a T92+G+I model (Tamura K., 1992); all positions containing gaps and missing data were eliminated. There were a total of 920 positions in the final dataset. Alignments and phylogenetic trees processed through Mesquite
DOI: 10.6084/m9.figshare.24943185.v1
title: Apiotrichum vinum BR3 phylogenetic tree

description: Phylogenetic tree for Apiotrichum vinum sp.nov. accommodation. Maximum likelihood tree built from concatenated LSU and ITS sequences. The tree with the highest log likelihood (-3722.82) is shown. Bootstrap support values &gt; 60 % (from 1000 replicates) are shown at the nodes. Phylogenetic analysis was conducted in MEGA v. 11 (Takamura et al., 2021) using a T92+G+I model (Tamura K., 1992); all positions containing gaps and missing data were eliminated. There were a total of 920 positions in the final dataset. Alignments and phylogenetic trees processed through Mesquite
DOI: 10.6084/m9.figshare.23488799
title: Efficacy and Safety of Different Types of Intraocular Pressure-Lowering Surgeries in Patients with Primary Angle Closure (PAC) or PAC Glaucoma: Systematic Review and Network Meta-Analysis of Randomized Clinical Trials

description: To compare the intraocular pressure (IOP)-lowering effect of different types of surgery available in the literature using a network meta-analysis (NMA) based on a systematic review. PubMed and the Cochrane database were searched. Randomized clinical trials involving surgical interventions for high IOP for PAC (primary angle closure) or PACG (primary angle closure glaucoma) were included. Descriptive statistics and outcomes were extracted. Bayesian NMA was performed to compare the IOP-lowering effect and the change in the number of antiglaucoma drugs required between baseline and endpoint, as well as success rates. This NMA included 21 articles with 1237 eyes with PAC or PACG. Interventions were characterised as phacoemulsification (phaco), trabeculectomy, goniosynechialysis (GSL) with viscoelastic or blunt device, goniosurgery (GS) (trabeculotomy or goniotomy), micro-bypass stent (Istent®), endocyclophotocoagulation (ECPL) or various combinations of these procedures. Phaco+GSL [−1.73 (95%CrI: −3.53 to −0.13)] and phaco+GSL+GS [−3.92 (95%CrI: −6.91 to −1.31)] provided better IOP lowering effects than phaco alone. Phaco+trabeculectomy [−3.11 (95%CrI: −5.82 to −0.44)] was inferior to phaco+GSL+GS. Phaco+trabeculectomy [−0.45 (95%CrI: −0.81 to −0.13)] provided a better outcome in terms of reducing the need for antiglaucoma drug compared to phaco alone. There were no differences between the other surgeries in terms of reduction of antiglaucoma drug number and IOP lowering effect. Success rates were similar for all surgical procedures. Phaco+GSL+GS showed the most promising results for lowering IOP. Phaco+trabeculectomy resulted in a significant reduction in the number of antiglaucoma drugs compared to phaco alone.
DOI: 10.6084/m9.figshare.23488799.v1
title: Efficacy and Safety of Different Types of Intraocular Pressure-Lowering Surgeries in Patients with Primary Angle Closure (PAC) or PAC Glaucoma: Systematic Review and Network Meta-Analysis of Randomized Clinical Trials

description: To compare the intraocular pressure (IOP)-lowering effect of different types of surgery available in the literature using a network meta-analysis (NMA) based on a systematic review. PubMed and the Cochrane database were searched. Randomized clinical trials involving surgical interventions for high IOP for PAC (primary angle closure) or PACG (primary angle closure glaucoma) were included. Descriptive statistics and outcomes were extracted. Bayesian NMA was performed to compare the IOP-lowering effect and the change in the number of antiglaucoma drugs required between baseline and endpoint, as well as success rates. This NMA included 21 articles with 1237 eyes with PAC or PACG. Interventions were characterised as phacoemulsification (phaco), trabeculectomy, goniosynechialysis (GSL) with viscoelastic or blunt device, goniosurgery (GS) (trabeculotomy or goniotomy), micro-bypass stent (Istent®), endocyclophotocoagulation (ECPL) or various combinations of these procedures. Phaco+GSL [−1.73 (95%CrI: −3.53 to −0.13)] and phaco+GSL+GS [−3.92 (95%CrI: −6.91 to −1.31)] provided better IOP lowering effects than phaco alone. Phaco+trabeculectomy [−3.11 (95%CrI: −5.82 to −0.44)] was inferior to phaco+GSL+GS. Phaco+trabeculectomy [−0.45 (95%CrI: −0.81 to −0.13)] provided a better outcome in terms of reducing the need for antiglaucoma drug compared to phaco alone. There were no differences between the other surgeries in terms of reduction of antiglaucoma drug number and IOP lowering effect. Success rates were similar for all surgical procedures. Phaco+GSL+GS showed the most promising results for lowering IOP. Phaco+trabeculectomy resulted in a significant reduction in the number of antiglaucoma drugs compared to phaco alone.
DOI: 10.6084/m9.figshare.24031842
title: Intravitreal Injection of Anti-Vascular Endothelial Growth Factors Combined with Corticosteroids for the Treatment of Macular Edema Secondary to Retinal Vein Occlusion: A Systematic Review and Meta-Analysis

description: To evaluate the efficacy and safety of intravitreal anti-vascular endothelial growth factor (anti-VEGF) and corticosteroid combination therapy for the management of treatment-naïve or recurrent/refractory macular edema caused by retinal vein occlusion (RVO) in comparison with anti-VEGF monotherapy. In this systematic review and meta-analysis study, the data from publications in the electronic databases including PubMed, Embase, Cochrane Library Central Register of Controlled Trials, ISI and Scopus from January 1, 2007, through November 20, 2020, were compiled. Heterogeneity was statistically quantified by the I<sub>2</sub> statistic, and meta-analysis was performed using a random-effects model. Twenty-four related studies were identified, including a total of 1280 eyes, which consisted of 685 and 507 patients with central retinal vein occlusion (CRVO) and branch retinal vein occlusion (BRVO), respectively. This study demonstrated a greater improvement in best-corrected visual acuity (BCVA) in the combination group compared to anti-VEGF monotherapy for both CRVO and BRVO cases at 6 months after initiating therapy. The improvement in vision was more notable in BRVO cases than in CRVO cases. However, the changes in central macular thickness (CMT) did not differ significantly between the different treatment approaches, and the results were inconclusive. Including all cases with RVO, there was no inferiority in terms of BCVA improvement and CMT reduction in the triamcinolone subgroup compared with the slow-release dexamethasone implant subgroup. A greater improvement was noticed in terms of BCVA in the sequentially treated subgroup compared to the simultaneous treatment subgroup, while there was a greater reduction in CMT in the simultaneous subgroup with the highest reduction recorded at 1 month after treatment. This study suggests that combination therapy with intravitreal anti-VEGF and corticosteroid (such as intravitreal or subtenon triamcinolone or dexamethasone implant) has a slightly better effect on improving BCVA in cases with BRVO or CRVO at 6 months compared to monotherapy.
DOI: 10.6084/m9.figshare.24031842.v1
title: Intravitreal Injection of Anti-Vascular Endothelial Growth Factors Combined with Corticosteroids for the Treatment of Macular Edema Secondary to Retinal Vein Occlusion: A Systematic Review and Meta-Analysis

description: To evaluate the efficacy and safety of intravitreal anti-vascular endothelial growth factor (anti-VEGF) and corticosteroid combination therapy for the management of treatment-naïve or recurrent/refractory macular edema caused by retinal vein occlusion (RVO) in comparison with anti-VEGF monotherapy. In this systematic review and meta-analysis study, the data from publications in the electronic databases including PubMed, Embase, Cochrane Library Central Register of Controlled Trials, ISI and Scopus from January 1, 2007, through November 20, 2020, were compiled. Heterogeneity was statistically quantified by the I<sub>2</sub> statistic, and meta-analysis was performed using a random-effects model. Twenty-four related studies were identified, including a total of 1280 eyes, which consisted of 685 and 507 patients with central retinal vein occlusion (CRVO) and branch retinal vein occlusion (BRVO), respectively. This study demonstrated a greater improvement in best-corrected visual acuity (BCVA) in the combination group compared to anti-VEGF monotherapy for both CRVO and BRVO cases at 6 months after initiating therapy. The improvement in vision was more notable in BRVO cases than in CRVO cases. However, the changes in central macular thickness (CMT) did not differ significantly between the different treatment approaches, and the results were inconclusive. Including all cases with RVO, there was no inferiority in terms of BCVA improvement and CMT reduction in the triamcinolone subgroup compared with the slow-release dexamethasone implant subgroup. A greater improvement was noticed in terms of BCVA in the sequentially treated subgroup compared to the simultaneous treatment subgroup, while there was a greater reduction in CMT in the simultaneous subgroup with the highest reduction recorded at 1 month after treatment. This study suggests that combination therapy with intravitreal anti-VEGF and corticosteroid (such as intravitreal or subtenon triamcinolone or dexamethasone implant) has a slightly better effect on improving BCVA in cases with BRVO or CRVO at 6 months compared to monotherapy.
DOI: 10.17861/6666a00a-887c-4d91-887d-c19bf3450180
title: Datafiles for "Sublinear scaling in non-Markovian open quantum systems simulations"

description: This contains the code and numerical data underlying the results figures of this publication in Physical Review X. Each figure dataset comes with a readme.txt which details how to convert the raw data into a figure file, as well as how the raw data can be regenerated from the also included codebase.
DOI: 10.5281/zenodo.10461379
title: SphereCraft - record 5

description: This is record 5 (of a total of 9 records) of the dataset published under the title SphereCraft: A Dataset for Spherical Keypoint Detection, Matching and Camera Pose Estimation. See conference details below.
DOI: 10.5281/zenodo.10461380
title: SphereCraft - record 5

description: This is record 5 (of a total of 9 records) of the dataset published under the title SphereCraft: A Dataset for Spherical Keypoint Detection, Matching and Camera Pose Estimation. See conference details below.
DOI: 10.5519/qd.yyb53dab
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1173 records)
DOI: 10.23634/mmu.00633613
title: ENERGETIC project (Errata data and scripts)

description: As outlined in the accompanying Errata report, this data (& scripts) is data revised due to discover of incorrect methodology in the original report when measuring power and energy consumption of U280 FPGA card.
DOI: 10.5281/zenodo.8376574
title: Dynamic evolutionary interplay between ontogenetic skull patterning and whole-head integration

description: Data and code for the analysis in Ollonen et al., 2024, Dynamic evolutionary interplay between ontogenetic skull patterning and whole-head integration, Nature Ecology and Evolution. 

Raw landmark data, R scripts for the analysis and surface files used for the analysis as well as figure visualisations. 

Cite the original article, not the dataset citation!!!
DOI: 10.5281/zenodo.8376575
title: Dynamic evolutionary interplay between ontogenetic skull patterning and whole-head integration

description: Data and code for the analysis in Ollonen et al., 2024, Dynamic evolutionary interplay between ontogenetic skull patterning and whole-head integration, Nature Ecology and Evolution. 

Raw landmark data, R scripts for the analysis and surface files used for the analysis as well as figure visualisations. 

Cite the original article, not the dataset citation!!!
DOI: 10.6084/m9.figshare.23585274.v1
title: Supplemental Materials

description: Supplemental figures and tables
DOI: 10.5281/zenodo.10461604
title: Computational mathematical models
DOI: 10.5281/zenodo.10461603
title: Computational mathematical models
DOI: 10.18712/nsd-nsd3107-v1
title: TROPICO - WP4: Practices of Internal Collaboration for Policy Design, Academic Expert Survey, 2018

description: Work package 4 of the TROPICO project studies innovative practices of internal collaboration for policy design and examines the emergence and nature of such practices in governments across Europe (Belgium, Denmark, Estonia, France, Germany, Hungary, Netherlands, Norway, Spain, and United Kingdom). The academic expert survey was conducted among social scientists, legal scholars, historians, and economists to measure the variation of (1) actor constellations and capabilities (such as actor's salience) and (2) collaboration means for policy design, including the relevance of ICT tools therein. Survey questions address the nature and impact of ICT on collaboration in the ministerial bureaucracy, e.g. on the degree of formal and informal exchange or the participation of external actors, as well as the policy analytical capacity of government officials. Further questions refer to the role and capability of various agencies in policy formulation processes.
DOI: 10.5281/zenodo.10461535
title: SphereCraft - record 6

description: This is record 6 (of a total of 9 records) of the dataset published under the title SphereCraft: A Dataset for Spherical Keypoint Detection, Matching and Camera Pose Estimation. See conference details below.
DOI: 10.5281/zenodo.10461536
title: SphereCraft - record 6

description: This is record 6 (of a total of 9 records) of the dataset published under the title SphereCraft: A Dataset for Spherical Keypoint Detection, Matching and Camera Pose Estimation. See conference details below.
DOI: 10.6084/m9.figshare.24948141
title: Supplementary Material for: Helpful to Live Healthier? ——Intermittent Hypoxic/Ischemic Training Benefits Vascular Homeostasis and Lipid Metabolism with Activating SIRT1 Pathways in Overweight/Obese Individuals

description: Introduction: The present study aimed to investigate whether and how normobaric intermittent hypoxic training (IHT) or remote ischemic preconditioning (RIPC) plus normoxic training (RNT) has a synergistic protective effect on lipid metabolism and vascular function compared with normoxic training (NT) in overweight or obese adults. Methods: A total of 37 overweight or obese adults (36.03 ± 10.48 years) were randomly assigned to 3 groups: NT group (exercise intervention in normoxia), IHT group (exercise intervention in normobaric hypoxic chamber) and RNT group (exercise intervention in normoxia + RIPC twice daily). All participants carried out the same one-hour exercise intervention for a total of four weeks, five days per week. Physical fitness parameters were evaluated at pre- and post-exercise intervention. Results: After training, all three groups significantly decreased BMI (p &lt; 0.05). IHT group reduced body fat percentage, visceral fat mass (p &lt; 0.05), blood pressure (p &lt; 0.01), left ABI, HRmax (p &lt; 0.05), the expression of PPARγ (p &lt; 0.01), and increased the expression of SIRT1 (p &lt; 0.05), VEGF (p &lt; 0.01). RNT group lowered waist-to-hip ratio, visceral fat mass, blood pressure (p &lt; 0.05) and HRmax (p &lt; 0.01). Conclusion: IHT could effectively reduce visceral fat mass and improve vascular elasticity in overweight or obese individuals than pure normoxic training with the activation of SIRT1-related pathways. And RNT also produced similar benefits on body composition and vascular function, which were weaker than those of IHT but stronger than normoxic training. Given the convenience and economy of RNT, both intermittent hypoxic and ischemic training have the potential to be a successful health promotion strategies for the overweight/obese population.
DOI: 10.6084/m9.figshare.24658509
title: Supplementary Material for: 3-Dimensional ultrastructural analysis of the rat pinealocyte; presence of secretory bulbous projections delineated from the cell body by junctional complexes.

description: Introduction: The superficial pineal gland of the Sprague Dawley rat is a neuroendocrine structure secreting the hormone melatonin. By use of block face scanning electron microscopy, our aim here was to identify the 3-dimensional ultrastructure of the gland. 
Methods: A series of 2,731 block face images of the rat pineal tissue, 30 nm in thickness, was obtained in a Teneo Video Volume scanning electron microscope and used for 3-dimensional reconstruction by use of the TrakEM2-plugin in the ImageJ software. Thin sections of the tissue were cut for transmission electron microscopy.
Results: Our analyses revealed cellular bulbous processes, containing 50 – 100 nm clear vesicles, that emerged from a neck-like area at the cell body of the pinealocyte. These bulbous processes extend into small canaliculi located in the center of parenchymal folliculi of the gland as well as into the perivascular spaces. Junctional complexes, comprising both gap and tight junctions, connected the lateral cellular membranes of the pinealocytes, where the bulbous processes emerged from the cell bodies. The canaliculi were via the extracellular space connected to the perivascular spaces. 
Discussion: The junctional complexes reported here would prevent a substance, released from the vesicles in the bulbous processes, from targeting the cell body from which they emerge. In line with previous combined morphological and biochemical demonstrations of glutamate located in clear vesicles of bulbous processes in the rat pineal gland, our ultrastructural data support the concept that bulbous processes could participate in a paracrine glutamatergic inhibition of the melatonin secretion in the pineal gland.
Conclusion: Bulbous secretory projections separated from the cell body by a junctional complex is a new feature of neuroendocrine cells.