cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3460400
title: Dataset for "What is Gab? A Bastion of Free Speech or an Alt-Right Echo Chamber?"

description: This dataset was used for this project: "What is Gab? A Bastion of Free Speech or an Alt-Right Echo Chamber?". Savvas Zannettou, Barry Bradlyn, Emiliano De Cristofaro, Michael Sirivianos, Gianluca Stringhini, Haewoon Kwak, Jeremy Blackburn. Workshop on Computational Methods in CyberSafety, Online Harassment and Misinformation, 2018. DOI: 10.1145/3184558.3191531. In addition, this project has received funding from the European Union’s Horizon 2020 Research and Innovation program under the Marie Skłodowska-Curie ENCASE project (Grant Agreement No. 691025). The work reflects only the authors’ views; the Agency and the Commission are not responsible for any use that may be made of the information it contains. Using Gab’s API, we crawl the social network using a snowball methodology. Specifically, we obtain data for the most popular users as returned by Gab’s API and iteratively collect data from all their followers as well as their followings. Subsequently, for all users in our dataset we collect all of their the posts. Overall, we collect 22,112,812 posts from 336,752 users, between August 2016 and January 2018. This dataset is a .json file and each line has one .json object.
DOI: 10.7284/115602
title: Fluorometer data collected during research cruise FK140613 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc249hqp
title: CCDC 1975342: Experimental Crystal Structure Determination

description: Related Article: Swati Jindal, Vijay Kumar Maka, Jarugu Narasimha Moorthy|2020|J.Mater.Chem.C|8|11449|doi:10.1039/D0TC01126F
DOI: 10.5281/zenodo.1418346
title: Dataset for "What is Gab? A Bastion of Free Speech or an Alt-Right Echo Chamber?"

description: This dataset was used for this project: "What is Gab? A Bastion of Free Speech or an Alt-Right Echo Chamber?". Savvas Zannettou, Barry Bradlyn, Emiliano De Cristofaro, Michael Sirivianos, Gianluca Stringhini, Haewoon Kwak, Jeremy Blackburn. Workshop on Computational Methods in CyberSafety, Online Harassment and Misinformation, 2018. DOI: 10.1145/3184558.3191531. In addition, this project has received funding from the European Union’s Horizon 2020 Research and Innovation program under the Marie Skłodowska-Curie ENCASE project (Grant Agreement No. 691025). The work reflects only the authors’ views; the Agency and the Commission are not responsible for any use that may be made of the information it contains. Using Gab’s API, we crawl the social network using a snowball methodology. Specifically, we obtain data for the most popular users as returned by Gab’s API and iteratively collect data from all their followers as well as their followings. Subsequently, for all users in our dataset we collect all of their the posts. Overall, we collect 22,112,812 posts from 336,752 users, between August 2016 and January 2018. This dataset is a .json file and each line has one .json object.
DOI: 10.7284/115572
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK140613 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118983
title: Gyrocompass data collected during research cruise FK140613 using a Raytheon STD 22 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118955
title: INS (Inertial Navigation System) data collected during research cruise FK140613 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115753
title: Magnetometer data collected during research cruise FK140613 using a Geometrics G-882 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7590851.v1
title: Nonparametric imputation by data depth

description: We present single imputation method for missing values which borrows the idea of data depth—a measure of centrality defined for an arbitrary point of a space with respect to a probability distribution or data cloud. This consists in iterative maximization of the depth of each observation with missing values, and can be employed with any properly defined statistical depth function. For each single iteration, imputation reverts to optimization of quadratic, linear, or quasiconcave functions that are solved analytically by linear programming or the Nelder-Mead method. As it accounts for the underlying data topology, the procedure is distribution free, allows imputation close to the data geometry, can make prediction in situations where local imputation (<i>k</i>-nearest neighbors, random forest) cannot, and has attractive robustness and asymptotic properties under elliptical symmetry. It is shown that a special case—when using the Mahalanobis depth—has direct connection to well-known methods for the multivariate normal model, such as iterated regression and regularized PCA. The methodology is extended to multiple imputation for data stemming from an elliptically symmetric distribution. Simulation and real data studies show good results compared with existing popular alternatives. The method has been implemented as an R-package. Supplementary materials for the article are available online.
DOI: 10.7284/115760
title: Meteorological Station data collected during research cruise FK140613 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7589066
title: Data of thymol dietary supplementation in quail (Coturnix japonica ): linking bioavailability, effects on egg yolk total fatty acids and performance traits

description: A bi-factorial design combining the effects of the diet supplied (five levels) and time of sampling (five levels) was established for the variables studied: - Five experimental diets (two controls: the basal diet and the basal diet with vehicle solution; and three thymol doses: 2, 4 and 6.25g/kg of feed). - Five times of sampling (one initial sample point; three sample points along the supplementation period and one at the end of the post-supplementation period). Thymol concentration in egg yolk and droppings was assessed using head-space solid phase microextraction followed by gas chromatography-mass spectrometry (HS-SPME/GC-MS). SPME was performed with a manual holder with 100um polydimethylsiloxane (PDMS) fiber and chromatography analysis was carried out in a Perkin Elmer Clarus® 600 equipped with a PSSI injector and a quadrupole MS detector Yolk lipids were extracted following homogenization in a suitable excess of chloroform/methanol (2:1 v/v) and fatty acids were methylated by transesterification to generate Fatty Acid Methyl Esters (FAMEs). FAMEs of total fatty acids of the yolk were analyzed by gas chromatography mass-spectrometry (GC-MS). Chromatography analysis was carried out in a Perkin Elmer Clarus® 600 equipped with a PSSI injector and a flame ionization detector. Potential histopathological changes in quail liver were assessed by a semi-quantitative method in which the alterations are classified into four major reaction patterns concerning to different functional units of the liver or to the whole organ. The extension and number of each alteration were recorded with a light microscope coupled to a digital camera. Performance traits analyzed included body weight, feed intake, egg laying rate, egg physical characteristics and a general welfare quality assessment. Body weight and feed intake were registered using a balance. Egg weight and percentage of constituents were acquired using an analytical balance. Egg morphometric characteristics were determined by means of a digital caliper (0-150mm/0.01). THY concentration in feed was measured for the three doses by HS-SPME.Finally, a welfare assessment based on observations of physical characteristics was made. Female skin lesions and plumage status were evaluated following a procedure adapted from the protocol developed by the Welfare Quality consortium.<br>
DOI: 10.6084/m9.figshare.7590833
title: CT Scan of Barley (Hordeum vulgare L.)

description: A 3D volumetric image of a 2-row barley spike generated by X-ray Computed Tomography (CT) by Jacob Landis and Daniel Koenig (University of California, Riverside). <br><br>The .zip file contains the raw .tif files and the .npy files is a numpy matrix.
DOI: 10.6084/m9.figshare.7590833.v1
title: CT Scan of Barley

description: A 3D volumetric image of a 2-row barley spike generated by X-ray Computed Tomography (CT) by Jacob Landis and Daniel Koenig (University of California, Riverside). <br><br>The .zip file contains the raw .tif files and the .npy files is a numpy matrix.
DOI: 10.7284/115557
title: Multibeam Echosounder data collected during research cruise FK140613 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115558
title: Multibeam Echosounder data collected during research cruise FK140613 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7589018
title: Fibrosis-4 index at diagnosis can predict all-cause mortality in patients with rheumatoid arthritis: A retrospective monocentric study

description: <b>Objectives:</b> Comorbidities and conventional risk factors influence the prognosis of patients with rheumatoid arthritis (RA). We investigated whether liver fibrosis burden is associated with all-cause mortality in patients with RA. <b>Methods:</b> A total of 2812 patients with RA were retrospectively selected and reviewed. Liver fibrosis was assessed using the fibrosis-4 index (FIB-4) [age (years)× aspartate aminotransferase level (IU/L)/platelet count (10<sup>9</sup>/L)/√alanine aminotransferase (IU/L)]. <b>Results:</b> The mean patient age was 51.5 years (482 men and 2330 women). The mean erythrocyte sedimentation rate (ESR), C-reactive protein (CRP) level, and FIB-4 were 43.5 mm/h, 9.0 mg/L, and 1.0, respectively. Methotrexate was used in 2524 (89.9%) patients, and biological or targeted synthetic disease-modifying antirheumatic drugs were used in 310 (11.0%) patients. During the follow-up period (mean 93.7 months), 89 (3.2%) patients died. Deceased patients had a significantly higher age (mean 64.4 vs. 51.1 years); frequency of male sex (31.5% vs. 16.7%), hypertension (HTN; 40.4 vs. 18.5%), and diabetes mellitus (DM; 25.8% vs. 7.7%); ESR (mean 57.1 vs. 43.0 mm/h); CRP (mean 16.9 vs. 8.7 mg/L); and FIB-4 (mean 1.5 vs. 1.0) (all <i>p</i> p = .004), together with male sex, HTN, DM, ESR, and intensity of glucocorticoid exposure, whereas the use of methotrexate was independently protective (all <i>p</i> <b>Conclusion:</b> Besides conventional risk factors, fibrotic burden, assessed using FIB-4, might be useful for risk stratification of patients newly diagnosed as having RA.
DOI: 10.6084/m9.figshare.7589066.v1
title: Data of thymol dietary supplementation in quail (Coturnix japonica ): linking bioavailability, effects on egg yolk total fatty acids and performance traits

description: A bi-factorial design combining the effects of the diet supplied (five levels) and time of sampling (five levels) was established for the variables studied: - Five experimental diets (two controls: the basal diet and the basal diet with vehicle solution; and three thymol doses: 2, 4 and 6.25g/kg of feed). - Five times of sampling (one initial sample point; three sample points along the supplementation period and one at the end of the post-supplementation period). Thymol concentration in egg yolk and droppings was assessed using head-space solid phase microextraction followed by gas chromatography-mass spectrometry (HS-SPME/GC-MS). SPME was performed with a manual holder with 100um polydimethylsiloxane (PDMS) fiber and chromatography analysis was carried out in a Perkin Elmer Clarus® 600 equipped with a PSSI injector and a quadrupole MS detector Yolk lipids were extracted following homogenization in a suitable excess of chloroform/methanol (2:1 v/v) and fatty acids were methylated by transesterification to generate Fatty Acid Methyl Esters (FAMEs). FAMEs of total fatty acids of the yolk were analyzed by gas chromatography mass-spectrometry (GC-MS). Chromatography analysis was carried out in a Perkin Elmer Clarus® 600 equipped with a PSSI injector and a flame ionization detector. Potential histopathological changes in quail liver were assessed by a semi-quantitative method in which the alterations are classified into four major reaction patterns concerning to different functional units of the liver or to the whole organ. The extension and number of each alteration were recorded with a light microscope coupled to a digital camera. Performance traits analyzed included body weight, feed intake, egg laying rate, egg physical characteristics and a general welfare quality assessment. Body weight and feed intake were registered using a balance. Egg weight and percentage of constituents were acquired using an analytical balance. Egg morphometric characteristics were determined by means of a digital caliper (0-150mm/0.01). THY concentration in feed was measured for the three doses by HS-SPME.Finally, a welfare assessment based on observations of physical characteristics was made. Female skin lesions and plumage status were evaluated following a procedure adapted from the protocol developed by the Welfare Quality consortium.<br>
DOI: 10.6084/m9.figshare.7589006
title: Simulated daily connectivity for sea lice between salmon aquaculture sites in Loch Fyne, Scotland

description: Larval connectivity between 9 salmon aquaculture sites in Loch Fyne, Scotland. The sites used here match the sites used in Adams et al. 2012, but values are calculated using the outputs from the more recent WestCOMS hydrodynamic model and a particle tracking model, described by Adams et al. 2016. <br>Connectivity values are calculated mean values over 85 14-day simulations, with start dates separated by 7 days, covering the period 04/07/2013-15/02/2015. The matrices (c_dX.dat; X=[1:14]) indicate the proportion of particles released from each site that arrived at each other site on a given day of the simulation (Lakey, 2015). <br>Presented matrices are a subset of matrices covering the same period for all active sites within the WestCOMS domain; the numbers assigned to sites on the figures reflect their index within the full matrices.<br><br>- Number in filename indicates day of arrival.- Row of matrix is the source site.- Column of matrix is the destination site.<br>Sites are organised in the presented matrices from south to north (site IDs: 117, 115, 111, 113, 112, 116, 109, 108, 114). Site ID 110 is omitted as it is a broodstock site.<br>Adams, T. P., Aleynik, D., & Black, K. D. (2016). Temporal variability in sea lice population connectivity and implications for regional management protocol. Aquaculture Environment Interactions, 8, 585–596. doi:10.3354/aei00203<br>Adams, T. P., Black, K., MacIntyre, C., MacIntyre, I., & Dean, R. (2012). Connectivity modelling and network analysis of sea lice infection in Loch Fyne, west coast of Scotland. Aquaculture Environment Interactions, 3, 51–63. doi:10.3354/aei00052<br>Lakey, C. C. (2015). The dynamics of sea lice in Scottish salmon farms (Masters’ thesis). University of York, York, UK.<br>
DOI: 10.6084/m9.figshare.7589006.v1
title: Simulated daily connectivity for sea lice between salmon aquaculture sites in Loch Fyne, Scotland

description: Larval connectivity between 9 salmon aquaculture sites in Loch Fyne, Scotland. The sites used here match the sites used in Adams et al. 2012, but values are calculated using the outputs from the more recent WestCOMS hydrodynamic model and a particle tracking model, described by Adams et al. 2016. <br>Connectivity values are calculated mean values over 85 14-day simulations, with start dates separated by 7 days, covering the period 04/07/2013-15/02/2015. The matrices (c_dX.dat; X=[1:14]) indicate the proportion of particles released from each site that arrived at each other site on a given day of the simulation (Lakey, 2015). <br>Presented matrices are a subset of matrices covering the same period for all active sites within the WestCOMS domain; the numbers assigned to sites on the figures reflect their index within the full matrices.<br><br>- Number in filename indicates day of arrival.- Row of matrix is the source site.- Column of matrix is the destination site.<br>Sites are organised in the presented matrices from south to north (site IDs: 117, 115, 111, 113, 112, 116, 109, 108, 114). Site ID 110 is omitted as it is a broodstock site.<br>Adams, T. P., Aleynik, D., & Black, K. D. (2016). Temporal variability in sea lice population connectivity and implications for regional management protocol. Aquaculture Environment Interactions, 8, 585–596. doi:10.3354/aei00203<br>Adams, T. P., Black, K., MacIntyre, C., MacIntyre, I., & Dean, R. (2012). Connectivity modelling and network analysis of sea lice infection in Loch Fyne, west coast of Scotland. Aquaculture Environment Interactions, 3, 51–63. doi:10.3354/aei00052<br>Lakey, C. C. (2015). The dynamics of sea lice in Scottish salmon farms (Masters’ thesis). University of York, York, UK.<br>
DOI: 10.6084/m9.figshare.7589018.v2
title: Fibrosis-4 index at diagnosis can predict all-cause mortality in patients with rheumatoid arthritis: A retrospective monocentric study

description: <b>Objectives:</b> Comorbidities and conventional risk factors influence the prognosis of patients with rheumatoid arthritis (RA). We investigated whether liver fibrosis burden is associated with all-cause mortality in patients with RA. <b>Methods:</b> A total of 2812 patients with RA were retrospectively selected and reviewed. Liver fibrosis was assessed using the fibrosis-4 index (FIB-4) [age (years)× aspartate aminotransferase level (IU/L)/platelet count (10<sup>9</sup>/L)/√alanine aminotransferase (IU/L)]. <b>Results:</b> The mean patient age was 51.5 years (482 men and 2330 women). The mean erythrocyte sedimentation rate (ESR), C-reactive protein (CRP) level, and FIB-4 were 43.5 mm/h, 9.0 mg/L, and 1.0, respectively. Methotrexate was used in 2524 (89.9%) patients, and biological or targeted synthetic disease-modifying antirheumatic drugs were used in 310 (11.0%) patients. During the follow-up period (mean 93.7 months), 89 (3.2%) patients died. Deceased patients had a significantly higher age (mean 64.4 vs. 51.1 years); frequency of male sex (31.5% vs. 16.7%), hypertension (HTN; 40.4 vs. 18.5%), and diabetes mellitus (DM; 25.8% vs. 7.7%); ESR (mean 57.1 vs. 43.0 mm/h); CRP (mean 16.9 vs. 8.7 mg/L); and FIB-4 (mean 1.5 vs. 1.0) (all <i>p</i> p = .004), together with male sex, HTN, DM, ESR, and intensity of glucocorticoid exposure, whereas the use of methotrexate was independently protective (all <i>p</i> <b>Conclusion:</b> Besides conventional risk factors, fibrotic burden, assessed using FIB-4, might be useful for risk stratification of patients newly diagnosed as having RA.
DOI: 10.7284/115743
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK140613 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7589018.v1
title: Fibrosis-4 index at diagnosis can predict all-cause mortality in patients with rheumatoid arthritis: A retrospective monocentric study

description: <b>Objectives:</b> Comorbidities and conventional risk factors influence the prognosis of patients with rheumatoid arthritis (RA). We investigated whether liver fibrosis burden is associated with all-cause mortality in patients with RA. <b>Methods:</b> A total of 2812 patients with RA were retrospectively selected and reviewed. Liver fibrosis was assessed using the fibrosis-4 index (FIB-4) [age (years)× aspartate aminotransferase level (IU/L)/platelet count (10<sup>9</sup>/L)/√alanine aminotransferase (IU/L)]. <b>Results:</b> The mean patient age was 51.5 years (482 men and 2330 women). The mean erythrocyte sedimentation rate (ESR), C-reactive protein (CRP) level, and FIB-4 were 43.5 mm/h, 9.0 mg/L, and 1.0, respectively. Methotrexate was used in 2524 (89.9%) patients, and biological or targeted synthetic disease-modifying antirheumatic drugs were used in 310 (11.0%) patients. During the follow-up period (mean 93.7 months), 89 (3.2%) patients died. Deceased patients had a significantly higher age (mean 64.4 vs. 51.1 years); frequency of male sex (31.5% vs. 16.7%), hypertension (HTN; 40.4 vs. 18.5%), and diabetes mellitus (DM; 25.8% vs. 7.7%); ESR (mean 57.1 vs. 43.0 mm/h); CRP (mean 16.9 vs. 8.7 mg/L); and FIB-4 (mean 1.5 vs. 1.0) (all <i>p</i> p = .004), together with male sex, HTN, DM, ESR, and intensity of glucocorticoid exposure, whereas the use of methotrexate was independently protective (all <i>p</i> <b>Conclusion:</b> Besides conventional risk factors, fibrotic burden, assessed using FIB-4, might be useful for risk stratification of patients newly diagnosed as having RA.
DOI: 10.7284/121426
title: TSG (Thermosalinograph) data collected during research cruise FK140613 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7588937
title: BinP_TF.fa.zip

description: transcriptome assembly from BinPacker using two kmer values (25,32) and merged with Transfuse
DOI: 10.17028/rd.lboro.7588934
title: Saltmarsh flow and vegetation data

description: Data for the paper:<br>Marjoribanks, T. I., Lague, D., Hardy, R. J., Boothroyd, R. J., Leroux, J., Mony, C., & Puijalon, S. ( 2019).Flexural rigidity and shoot reconfiguration determine wake length behind saltmarsh vegetation patches. <i>Journal of Geophysical Research: Earth Surface</i>, 124. <br>
DOI: 10.6084/m9.figshare.7588937.v1
title: BinP_TF.fa.zip

description: transcriptome assembly from BinPacker using two kmer values (25,32) and merged with Transfuse
DOI: 10.7284/115582
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK140625 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21942/uva.7588919.v1
title: Statistics

description: RDM file with the statistical analysis performed on the DGS and RSL data for the project "Body-anchored verbs and argument omission in two sign languages".
DOI: 10.17028/rd.lboro.7588934.v2
title: Saltmarsh flow and vegetation data

description: Data for the paper:<br>Marjoribanks, T. I., Lague, D., Hardy, R. J., Boothroyd, R. J., Leroux, J., Mony, C., & Puijalon, S. ( 2019).Flexural rigidity and shoot reconfiguration determine wake length behind saltmarsh vegetation patches. <i>Journal of Geophysical Research: Earth Surface</i>, 124. <br>
DOI: 10.7284/118988
title: Fluorometer data collected during research cruise FK140625 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7588934.v1
title: Saltmarsh flow and vegetation data

description: Data for the paper: "The role of flexural rigidity and shoot reconfiguration in determining sediment deposition behind saltmarsh vegetation patches", currently under review at <i>Journal of Geophysical Research: Earth Surface</i> (<i>JGR-ES</i>).
DOI: 10.7284/118987
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK140625 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition