cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26989420
title: Additional file 17 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 17. Table S17. Abundance of Serratia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989420.v1
title: Additional file 17 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 17. Table S17. Abundance of Serratia genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989423
title: Additional file 18 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 18. Table S18. Abundance of Shigella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989423.v1
title: Additional file 18 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 18. Table S18. Abundance of Shigella genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold rows refer to bacterial pathogens/colonizers whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989426.v1
title: Additional file 19 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 19. Table S19. Abundance of Cronobacter genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989426
title: Additional file 19 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 19. Table S19. Abundance of Cronobacter genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989429
title: Additional file 20 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 20. Table S20. Abundance of Bifidobacterium genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989429.v1
title: Additional file 20 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 20. Table S20. Abundance of Bifidobacterium genus/species in terms of non-redundant gene queries of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. Bold row refers to a bacterial pathogen/colonizer whose ARGs are prevalent in human. The total list of human bacterial pathogens/colonizers is shown in Table S4.
DOI: 10.6084/m9.figshare.26989432
title: Additional file 21 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 21. Table S21. Number of non-redundant gene queries of bacterial genera with species existing in the list of bacterial human pathogens/colonizers shown in Table S4 in rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum.
DOI: 10.6084/m9.figshare.26989432.v1
title: Additional file 21 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 21. Table S21. Number of non-redundant gene queries of bacterial genera with species existing in the list of bacterial human pathogens/colonizers shown in Table S4 in rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum.
DOI: 10.6084/m9.figshare.26989438
title: Additional file 23 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 23. Table S23. Number of the most abundant non-redundant antibiotic resistance gene queries (ARGs) of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. These ARGs are prevalent in bacterial human pathogens or colonizers.
DOI: 10.6084/m9.figshare.26989438.v1
title: Additional file 23 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 23. Table S23. Number of the most abundant non-redundant antibiotic resistance gene queries (ARGs) of rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. These ARGs are prevalent in bacterial human pathogens or colonizers.
DOI: 10.6084/m9.figshare.26989441
title: Additional file 24 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 24. Table S24. Highly abundant non-redundant antibiotic resistance gene queries (ARGs) in rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. These ARGs are prevalent in bacterial human pathogens or colonizers.
DOI: 10.6084/m9.figshare.26989441.v1
title: Additional file 24 of Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

description: Additional file 24. Table S24. Highly abundant non-redundant antibiotic resistance gene queries (ARGs) in rhizosphere (R) and bulk (S) soil microbiomes of Abutilon fruticosum. These ARGs are prevalent in bacterial human pathogens or colonizers.
DOI: 10.6084/m9.figshare.26989447
title: Additional file 1 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 1: Table S1. Differentially expressed genes in leaf tissue.
DOI: 10.6084/m9.figshare.26989447.v1
title: Additional file 1 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 1: Table S1. Differentially expressed genes in leaf tissue.
DOI: 10.6084/m9.figshare.26989450
title: Additional file 2 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 2: Table S2. List of enriched GO terms from leaf DEGs.
DOI: 10.6084/m9.figshare.26989453
title: Additional file 3 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 3: Table S3. Differentially expressed genes in root tissue.
DOI: 10.6084/m9.figshare.26989453.v1
title: Additional file 3 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 3: Table S3. Differentially expressed genes in root tissue.
DOI: 10.6084/m9.figshare.26989456
title: Additional file 4 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 4: Table S4. List of enriched GO terms from root DEGs.
DOI: 10.6084/m9.figshare.26989450.v1
title: Additional file 2 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 2: Table S2. List of enriched GO terms from leaf DEGs.
DOI: 10.6084/m9.figshare.26989459
title: Additional file 5 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 5: Table S5. List of enriched GO terms from OsbZIP52 protein network.
DOI: 10.6084/m9.figshare.26989459.v1
title: Additional file 5 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 5: Table S5. List of enriched GO terms from OsbZIP52 protein network.
DOI: 10.6084/m9.figshare.26989462
title: Additional file 6 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 6: Table S6. Primer used in real-time qPCR.
DOI: 10.6084/m9.figshare.26989465
title: Additional file 7 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 7: Table S7. Promoter region variation analysis by comparing salt-tolerant (Horkuch and Pokkali) and salt-sensitive (IR29) rice varieties.
DOI: 10.6084/m9.figshare.26989456.v1
title: Additional file 4 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 4: Table S4. List of enriched GO terms from root DEGs.
DOI: 10.6084/m9.figshare.26989462.v1
title: Additional file 6 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 6: Table S6. Primer used in real-time qPCR.
DOI: 10.6084/m9.figshare.26989465.v1
title: Additional file 7 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 7: Table S7. Promoter region variation analysis by comparing salt-tolerant (Horkuch and Pokkali) and salt-sensitive (IR29) rice varieties.
DOI: 10.6084/m9.figshare.26989468
title: Additional file 8 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 8: Table S8. Motif region variation analysis by comparing salt-tolerant (Horkuch and Pokkali) and salt-sensitive (IR29) rice varieties.
DOI: 10.6084/m9.figshare.26989495
title: Additional file 3 of The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

description: Additional file 3: Table S4. Branch-Site Model results with EasyCodeML. Selective pressure analysis of the mitochondrial protein-coding genes (four high-altitude species as the foreground branches). Table S5. Site-Model results with EasyCodeML. Selective pressure analysis of the mitochondrial protein-coding genes (four high-altitude species as the foreground branches).
DOI: 10.6084/m9.figshare.26989495.v1
title: Additional file 3 of The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

description: Additional file 3: Table S4. Branch-Site Model results with EasyCodeML. Selective pressure analysis of the mitochondrial protein-coding genes (four high-altitude species as the foreground branches). Table S5. Site-Model results with EasyCodeML. Selective pressure analysis of the mitochondrial protein-coding genes (four high-altitude species as the foreground branches).
DOI: 10.15468/dl.q2p5p6
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "Geometry POLYGON((18.99174 -29.60228,37.59037 -29.60228,37.59037 -22.16283,18.99174 -22.16283,18.99174 -29.60228))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myrothamnus flabellifolius (Sond.) Welw."
 ]
}

 The dataset includes 327 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011671-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26989504
title: Additional file 1 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 1. Specimens used in this study, with corresponding museum voucher numbers.
DOI: 10.6084/m9.figshare.26989507
title: Additional file 2 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 2. A list and description of all landmark positions utilized in this study.
DOI: 10.6084/m9.figshare.26989492
title: Additional file 2 of The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

description: Additional file 2: Supplementary Figure S1. Secondary structure predictions of the Control Region.
DOI: 10.6084/m9.figshare.26989486.v1
title: Additional file 1 of NORMAN guidance on suspect and non-target screening in environmental monitoring

description: Additional file 1: Table S1. Compiles details of non-vendor software and algorithms for processing HRMS data.
DOI: 10.6084/m9.figshare.26989504.v1
title: Additional file 1 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 1. Specimens used in this study, with corresponding museum voucher numbers.
DOI: 10.6084/m9.figshare.26989507.v1
title: Additional file 2 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 2. A list and description of all landmark positions utilized in this study.
DOI: 10.6084/m9.figshare.26989510
title: Additional file 3 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 3. Codings for habitat and major diet ecology for all species analyzed in this study, including literature references used to infer these data.
DOI: 10.6084/m9.figshare.26989492.v1
title: Additional file 2 of The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

description: Additional file 2: Supplementary Figure S1. Secondary structure predictions of the Control Region.
DOI: 10.6084/m9.figshare.26989528.v1
title: Additional file 3 of Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions

description: Additional file 3: Table S2. Gene name and NCBI accession numbers of the sequences used to build the custom database used in this study.
DOI: 10.6084/m9.figshare.26989531.v1
title: Additional file 4 of Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions

description: Additional file 4: Table S3. List of the SGB from Hermetia illucens larvae midgut and MAGs reconstructed in this study.
DOI: 10.6084/m9.figshare.26989510.v1
title: Additional file 3 of Ecological correlates of cranial evolution in the megaradiation of dipsadine snakes

description: Additional file 3. Codings for habitat and major diet ecology for all species analyzed in this study, including literature references used to infer these data.
DOI: 10.6084/m9.figshare.26989468.v1
title: Additional file 8 of Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

description: Additional file 8: Table S8. Motif region variation analysis by comparing salt-tolerant (Horkuch and Pokkali) and salt-sensitive (IR29) rice varieties.
DOI: 10.6084/m9.figshare.26989486
title: Additional file 1 of NORMAN guidance on suspect and non-target screening in environmental monitoring

description: Additional file 1: Table S1. Compiles details of non-vendor software and algorithms for processing HRMS data.
DOI: 10.6084/m9.figshare.26989561
title: Additional file 2 of Identification of novel genetic risk factors of dilated cardiomyopathy: from canine to human

description: Additional file 2: Table S1. Clinical parameters, cohort classification and chr5:60,111,983 genotypes of 35 Dobermanns evaluated in Uppsala, Sweden. Table S2. A list of 393 public or in-house genomes from wolves and 87 dog breeds used in filtering and variant screening. Table S3. Distribution of the chr5:53,109,178G&gt;A variant in 321 array genotyped Dobermanns, 10 Dobermann whole genomes and 393 non-Dobermann whole genomes. Table S4. Primer sequences, total concentration in reaction (Conc.), annealing temperature (An. temp) and assays used in transcript analyses. Table S5. Phenotype definitions used with UK Biobank data. CAD = coronary artery disease, LVSD = left ventricular systolic dysfunction. Table S6. Results of various univariate linear mixed model association analyses in GEMMA with different case subcohorts. Table S7. Association of sex and risk SNPs chr53:109,178 and chr5:60,531,090 with echocardiographic changes in the logistic regression analysis. Table S8. Association of sex and risk SNPs chr53:109,178 and chr5:60,531,090 with echocardiographic changes. Cases from the replication cohort were included. Table S9. Variants in the minor locus region (chr5:50-54 Mb) shared by two DCM-affected Dobermanns with A/A at the risk SNP chr5:53,109,178 and present in less than 10 % of 366 non-Dobermann genomes. Table S10. Variants in the minor locus region (chr5:50-54 Mb) shared by three DCM-affected Dobermanns with G/G at the risk SNP chr5:53,109,178 and present in less than 10 % of 366 non-Dobermann genomes. Table S11. Variants in the major locus region (chr5:58.2-63.3 Mb) shared by eight DCM-affected Dobermanns with A/A (N = 7) or G/A (N = 1) at the risk SNP chr5:60,531,090 and present in less than 10 % of 366 non-Dobermann genomes. Table S12. Gene content and annotation of the minor locus and flanking regions (chr5:50.0-54.0 Mb). Table S13. Gene content and annotation of the major locus and flanking regions (chr5:58.2-63.3 Mb). Table S14. Partial amino acid sequences and conservation of 94 Eutherian RNF207 orthologs. Table S15. Distribution of the chr5:60,111,983G&gt;A variant in 9 RNA sequenced Dobermanns, 10 whole-genome sequenced Dobermanns and 393 non-Dobermann whole genomes from wolves and 87 dog breeds. Table S16. Distribution of the chr5:60,111,983G&gt;A variant in 14230 dogs from 319 breeds or breed varieties genotyped on a commercial platform. Table S17. Potentially damaging variants in RNF207 identified in cardiomyopathy patients (UMCU and AMC), in UK Biobank participants diagnosed with DCM (UKBiobank) or in cardiomyopathy patients in the FinnGen consortium. Table S18. Potentially damaging variants in PRKAA2 identified in cardiomyopathy patients (UMCU and AMC), in UK Biobank participants diagnosed with DCM (UKBiobank) or in cardiomyopathy patients in the FinnGen consortium.
DOI: 10.6084/m9.figshare.26989528
title: Additional file 3 of Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions

description: Additional file 3: Table S2. Gene name and NCBI accession numbers of the sequences used to build the custom database used in this study.
DOI: 10.6084/m9.figshare.26989534
title: Additional file 1 of Evaluation of the DBP formation potential of biocides and identification of knowledge gaps in environmental risk assessment

description: Additional file 1. Summary of the DBP literature search.
DOI: 10.6084/m9.figshare.26989642
title: Additional file 3 of High day and night temperatures impact on cotton yield and quality—current status and future research direction

description: Additional file 3: Supplementary Table 3. Published data on the effect of high day, high night and combined high day and night temperature stresses on yield and yield related traits in cotton (Kamal et al. 2017; Zafar et al. 2021).
DOI: 10.6084/m9.figshare.26989627
title: Additional file 1 of Resveratrol: a potential medication for the prevention and treatment of varicella zoster virus-induced ischemic stroke

description: Additional file 1. The specific information of 20 potential drugs for the treatment and prevention of VZV-IS.
DOI: 10.6084/m9.figshare.26989543
title: Additional file 3 of Evaluation of the DBP formation potential of biocides and identification of knowledge gaps in environmental risk assessment

description: Additional file 3. Entries from the ECHA database.
DOI: 10.6084/m9.figshare.24269279.v1
title: Additional file 1 of Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)

description: Additional file 1: Table S1. Information on distribution for species of Causonis involved in this study. Table S2. Detailed information on individuals of Causonis sequenced for whole genome sequencing (WGS) data and transcriptome data. Table S3. Sources of the whole genome sequencing (WGS) data and transcriptome data for outgroup species in phylogenetic analyses and divergence time estimation. Table S4. A summary of transcriptome sequencing. Table S5. A summary of transcriptome assembly. Table S6. Parsimony-informative sites of each ortholog alignment used for phylogeny reconstruction. Table S7. The datasets used in this study and the analyses conducted on the datasets. Table S8. D-statistic test results on quartets of the combinations of species from Parthenocissus, with P. speciosa as the outgroup. Table S9. P-values in likelihood ratio tests for determining the optimal number of mixing components. Table S10. The Ks peaks inferred as mixtures of normal distributions. Table S11. Gene duplications detected with a least common ancestor reconciliation method on standard species tree using Tree2GD, showing gene duplication type. Table S12. Reconciliation scores of multi-labeled or single-labeled tree candidates. Table S13. Results of model test in BioGeoBEARS, based on the maximum likelihood tree constructed with the 76taxa-79pd dataset and the multi-species tree constructed with the 76taxa-50nu dataset. Table S14. Distribution records of C. japonica and C. ciliifera used in MaxEnt species distribution modeling.
DOI: 10.6084/m9.figshare.26989627.v1
title: Additional file 1 of Resveratrol: a potential medication for the prevention and treatment of varicella zoster virus-induced ischemic stroke

description: Additional file 1. The specific information of 20 potential drugs for the treatment and prevention of VZV-IS.