cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11743758.v2
title: Nesting Distances and Elevations for Quantifying the impacts of future sea level rise on nesting sea turtles in the southeastern USA

description: <b>Methods</b>We obtained nesting locations directly from each National Seashore. Nest locations were recorded by trained volunteers and National Park Service biologists through daily, early morning surveys of all beaches. Nesting female sea turtles leave conspicuous marks in the sand that can be used to determine the species and location of a nest if eggs are deposited. We made use of all nest locality data for the years in which Seashores used handheld GPS units for recording precise latitude and longitude (Canaveral National Seashore (CANA): 2013–2016, Cumberland Island National Seashore (CUIS): 2003–2017, Cape Lookout National Seashore (CALO): 2001–2015, Cape Hatteras National Seashore (CAHA): 2005–2016). We quantified the shortest distance between each nest site and high water line using the Near tool in ArcGIS (version 10.4). We used the mean high water line vector, retrieved from NOAA or USGS, for the year closest to the time when each nest was recorded (see Table 2 in publication for years and sources). Based on the angle between nest point and shoreline, we were able to determine which nests were east of the high water line (below the high water mark) and recorded these as negative values. We analyzed the cape areas within CALO and CAHA separately, because cape areas tend to accrue more sand, have wider beaches, and have more year-to-year high water line movement and sediment availability. We based the delineation for a “cape” area on a rectangle encompassing the area where the shoreline forms a distinctly concave shape as the directional orientation changes sharply from the roughly linear orientation of the rest of the island. CANA and CUIS do not have cape areas, and so the beach was analyzed as one for these two Seashores. We analyzed the current elevational distribution of sea turtle nests by extracting digital elevation values for nest sites from USGS digital elevation model (Caffrey et al. 2018).<b>File attributes</b>All data are in meters, park names are NPS abbreviations, two species included: loggerhead sea turtle (Cc), green sea turtle (Cm)<b></b>
DOI: 10.6084/m9.figshare.11743749
title: BiEntropy_TriEntropy_and_Primality.zip

description: This zip file contains the full set of spreadsheet *.xls files used to do the analytics and graphics of the ArXiv 1912.08051 paper "BiEntropy, TriEntropy and Primality".
DOI: 10.6084/m9.figshare.11743758.v1
title: Nesting Distances and Elevations

description: <b>Methods</b>We obtained nesting locations directly from each National Seashore. Nest locations were recorded by trained volunteers and National Park Service biologists through daily, early morning surveys of all beaches. Nesting female sea turtles leave conspicuous marks in the sand that can be used to determine the species and location of a nest if eggs are deposited. We made use of all nest locality data for the years in which Seashores used handheld GPS units for recording precise latitude and longitude (Canaveral National Seashore (CANA): 2013–2016, Cumberland Island National Seashore (CUIS): 2003–2017, Cape Lookout National Seashore (CALO): 2001–2015, Cape Hatteras National Seashore (CAHA): 2005–2016). We quantified the shortest distance between each nest site and high water line using the Near tool in ArcGIS (version 10.4). We used the mean high water line vector, retrieved from NOAA or USGS, for the year closest to the time when each nest was recorded (see Table 2 in publication for years and sources). Based on the angle between nest point and shoreline, we were able to determine which nests were east of the high water line (below the high water mark) and recorded these as negative values. We analyzed the cape areas within CALO and CAHA separately, because cape areas tend to accrue more sand, have wider beaches, and have more year-to-year high water line movement and sediment availability. We based the delineation for a “cape” area on a rectangle encompassing the area where the shoreline forms a distinctly concave shape as the directional orientation changes sharply from the roughly linear orientation of the rest of the island. CANA and CUIS do not have cape areas, and so the beach was analyzed as one for these two Seashores. We analyzed the current elevational distribution of sea turtle nests by extracting digital elevation values for nest sites from USGS digital elevation model (Caffrey et al. 2018).<b>File attributes</b>All data are in meters, park names are NPS abbreviations, two species included: loggerhead sea turtle (Cc), green sea turtle (Cm)<b></b>
DOI: 10.6084/m9.figshare.11743746
title: Auto regulatory capacity of the thyroid gland after numerous iodinated contrast media investigations

description: Excess of iodine may interfere with thyroid function. It is unclear to what extent the thyroid function is disturbed by repeated infusion of iodide contrast agent (IC) used during X-ray examinations. Thyroid function tests free T4 (FT4), free FT3 (FT3), thyroid-stimulating hormone (TSH), TSH receptor antibodies (TRAb) and thyroid peroxidase antibodies (TPO-Ab) were measured in a group of Norwegian patients with an assumed normal iodine balance before, 1 and 6 weeks after IC infusion. Forty patients (19 females and 21 men) referred for routine CT were included. Thirty two out of 40 patients had previously undertaken IC investigations. The mean TSH concentration was 2.1 mIU/l ± 1.7 at the baseline, increased to 2.9 ± 2.5 after 1 week (<i>p</i> p = .009) after 1 week, and returned to 14.0 pmol/l ± 2.5 after 6 weeks, comparable to the initial values (<i>p</i> &gt; .05). FT3 levels did not change during the period. There was no relationship between FT4, or TSH and age, gender, cancer/not cancer, number or frequency of earlier IC investigations. In conclusion, IC induces changes in thyroid function tests, however, they return to normal levels after 6 weeks. Our results suggest adequate auto regulatory capacity of the thyroid gland even in those with repeated contrast investigations (up to 40). Routine testing of thyroid function should therefore not be undertaken in this patient group.
DOI: 10.6084/m9.figshare.11743725
title: Supplementary Material for: Changes in Plasma Amyloid and Tau in a Longitudinal Study of Normal Aging, Mild Cognitive Impairment, and Alzheimer’s Disease

description: <b><i>Background:</i></b> Changes in cerebrospinal fluid, neuroimaging, and cognitive functions have been used as diagnostic biomarkers of Alzheimer’s disease (AD). This study aimed to investigate the temporal trajectories of plasma biomarkers in subjects with mild cognitive impairment (MCI) and patients with AD relative to healthy controls (HCs). <b><i>Methods:</i></b> In this longitudinal study, 82 participants (31 HCs, 33 MCI patients, and 18 AD patients) were enrolled. After 3 years, 7 HCs had transitioned to MCI and 10 subjects with MCI had converted to AD. We analyzed plasma amyloid beta (Aβ) and tau proteins at baseline and annually to correlate with biochemical data and neuropsychological scores. <b><i>Results:</i></b> Longitudinal data analysis showed an evolution of Aβ-related biomarkers over time within patients, whereas tau-related biomarkers differed primarily across diagnostic classifications. An initial steady increase in Aβ42 in the MCI stage was followed by a decrease just prior to clinical AD onset. Hyperphosphorylated tau protein levels correlated with cognitive decline in the MCI stage, but not in the AD stage. <b><i>Conclusion:</i></b> Plasma Aβ and tau levels change in a dynamic, nonlinear, nonparallel manner over the AD continuum. Changes in plasma Aβ concentration are time-dependent, whereas changes in hyperphosphorylated tau protein levels paralleled the clinical progression of MCI. It remains to be clarified whether diagnostic efficiency can be improved by combining multiple plasma markers or combining plasma markers with other diagnostic biomarkers.
DOI: 10.6084/m9.figshare.11743746.v1
title: Auto regulatory capacity of the thyroid gland after numerous iodinated contrast media investigations

description: Excess of iodine may interfere with thyroid function. It is unclear to what extent the thyroid function is disturbed by repeated infusion of iodide contrast agent (IC) used during X-ray examinations. Thyroid function tests free T4 (FT4), free FT3 (FT3), thyroid-stimulating hormone (TSH), TSH receptor antibodies (TRAb) and thyroid peroxidase antibodies (TPO-Ab) were measured in a group of Norwegian patients with an assumed normal iodine balance before, 1 and 6 weeks after IC infusion. Forty patients (19 females and 21 men) referred for routine CT were included. Thirty two out of 40 patients had previously undertaken IC investigations. The mean TSH concentration was 2.1 mIU/l ± 1.7 at the baseline, increased to 2.9 ± 2.5 after 1 week (<i>p</i> p = .009) after 1 week, and returned to 14.0 pmol/l ± 2.5 after 6 weeks, comparable to the initial values (<i>p</i> &gt; .05). FT3 levels did not change during the period. There was no relationship between FT4, or TSH and age, gender, cancer/not cancer, number or frequency of earlier IC investigations. In conclusion, IC induces changes in thyroid function tests, however, they return to normal levels after 6 weeks. Our results suggest adequate auto regulatory capacity of the thyroid gland even in those with repeated contrast investigations (up to 40). Routine testing of thyroid function should therefore not be undertaken in this patient group.
DOI: 10.6084/m9.figshare.11743572
title: Supplementary Material for: Examination of Treatment Satisfaction Instruments in Psoriasis: 2017 Results from the Psoriasis Working Group of the International Dermatology Outcome Measures (IDEOM)

description: <b><i>Background/Aims:</i></b> In dermatology clinical trials, assessment of patients’ treatment satisfaction is crucial but often lacking. To address this need, IDEOM’s Psoriasis Working Group seeks to evaluate, develop, and validate treatment satisfaction instruments for the psoriasis population. The Psoriasis Working Group aimed to determine (1) factors affecting psoriasis patients’ satisfaction with their therapies, (2) adequacy of two commonly used generic treatment satisfaction instruments in reflecting the psoriasis patients’ perspective, and (3) whether a need exists to develop a new treatment satisfaction instrument. <b><i>Methods:</i></b> Patient perspectives on satisfaction with treatment efficacy, safety, convenience, and overall satisfaction were elicited.<b><i></i></b>Stakeholders were presented with information regarding the feasibility and content validity of two generic treatment instruments, the Treatment Satisfaction Questionnaire for Medication (TSQM) and the Treatment Satisfaction with Medicines Questionnaire (SATMED-Q). We conducted a nominal group discussion and survey to determine whether stakeholders considered these instruments feasible and adequate to address treatment satisfaction for psoriasis therapies. <b><i>Results:</i></b> Forty-five stakeholders participated in the nominal group discussion and survey. 53% of participants voted that the TSQM and SATMED-Q are not adequate and that we should create a new dermatology-specific treatment satisfaction instrument. Patients and other stakeholders also provided feedback on aspects of treatment satisfaction important to them. These include speed of onset and durability of therapeutic effect of a medication, permanence of side effects, and convenience of administering the medication. <b><i>Conclusion:</i></b> Stakeholders, including patients and providers, determined that generic treatment satisfaction questionnaires are not adequate to evaluate treatment satisfaction in psoriasis patients.
DOI: 10.6084/m9.figshare.11743338
title: Supplementary Material for: Bariatric Surgery Impacts Levels of Serum Lipids during Pregnancy

description: <b><i>Introduction:</i></b> Bariatric surgery confers a high risk for nutritional deficiencies that could affect physiologic adaptation of lipids during pregnancy. We aimed to evaluate differences in serum lipids in pregnant women after bariatric surgery compared to obese and lean mothers. <b><i>Methods:</i></b> 25 women with a history of Roux-en-Y gastric bypass (RYGB), 19 obese and 19 normal-weight controls were included at the 24th–28th gestational week for determination of fasting lipids with follow-up in a subgroup after delivery. Data on neonatal biometry were additionally assessed. <b><i>Results:</i></b> Women after RYGB showed lower total-cholesterol (TC), low-density lipoprotein C (LDL-C), non-high-density lipoprotein C (non-HDL-C) and triglycerides (TG) compared to obese mothers. Despite their higher BMI, women after RYGB showed lower TC, LDL-C and non-HDL-C than normal-weight mothers. Ultrasensitive C-reactive protein was lower in RYGB mothers than in obese ones, reaching values of lean controls. Differences remained unchanged in BMI-matched comparison. Birth weight percentiles of RYGB offspring were associated with maternal TC (<i>r</i> = 0.59, <i>p</i> = 0.021), LDL-C (<i>r</i> = 0.71, <i>p</i> = 0.003), non-HDL (<i>r</i> = 0.59, <i>p</i> = 0.021) but not HDL-C or TG. After delivery, lipids decreased in all women; however, TC and LDL-C showed more attenuated decline in mothers after RYGB than control women. <b><i>Conclusion:</i></b> Pregnancies after RYGB show alterations of physiologic patterns in lipid profile. Further studies are required to evaluate whether imbalances in maternal lipids constitute a risk for abnormal fetal growth in this special cohort.
DOI: 10.6084/m9.figshare.11743338.v1
title: Supplementary Material for: Bariatric Surgery Impacts Levels of Serum Lipids during Pregnancy

description: <b><i>Introduction:</i></b> Bariatric surgery confers a high risk for nutritional deficiencies that could affect physiologic adaptation of lipids during pregnancy. We aimed to evaluate differences in serum lipids in pregnant women after bariatric surgery compared to obese and lean mothers. <b><i>Methods:</i></b> 25 women with a history of Roux-en-Y gastric bypass (RYGB), 19 obese and 19 normal-weight controls were included at the 24th–28th gestational week for determination of fasting lipids with follow-up in a subgroup after delivery. Data on neonatal biometry were additionally assessed. <b><i>Results:</i></b> Women after RYGB showed lower total-cholesterol (TC), low-density lipoprotein C (LDL-C), non-high-density lipoprotein C (non-HDL-C) and triglycerides (TG) compared to obese mothers. Despite their higher BMI, women after RYGB showed lower TC, LDL-C and non-HDL-C than normal-weight mothers. Ultrasensitive C-reactive protein was lower in RYGB mothers than in obese ones, reaching values of lean controls. Differences remained unchanged in BMI-matched comparison. Birth weight percentiles of RYGB offspring were associated with maternal TC (<i>r</i> = 0.59, <i>p</i> = 0.021), LDL-C (<i>r</i> = 0.71, <i>p</i> = 0.003), non-HDL (<i>r</i> = 0.59, <i>p</i> = 0.021) but not HDL-C or TG. After delivery, lipids decreased in all women; however, TC and LDL-C showed more attenuated decline in mothers after RYGB than control women. <b><i>Conclusion:</i></b> Pregnancies after RYGB show alterations of physiologic patterns in lipid profile. Further studies are required to evaluate whether imbalances in maternal lipids constitute a risk for abnormal fetal growth in this special cohort.
DOI: 10.6084/m9.figshare.11743281
title: GAdata_t3

description: Complete dataset of blendshape weights for subset of participants who repeated GA task at 3 timepoints
DOI: 10.6084/m9.figshare.11743308
title: GAdata_complete_t1

description: Dataset of blendshape weights for complete sample, t1 only
DOI: 10.6084/m9.figshare.11743281.v1
title: GAdata_t3

description: Complete dataset of blendshape weights for subset of participants who repeated GA task at 3 timepoints
DOI: 10.6084/m9.figshare.11743308.v1
title: GAdata_complete_t1

description: Dataset of blendshape weights for complete sample, t1 only
DOI: 10.6084/m9.figshare.11743272
title: Bullet-shaped magnetosome biomineralization within a magnetotactic Deltaproteobacterium: Implications for magnetofossil identification

description: Crystal length and width data for WYHR-1 magnetosomes.
DOI: 10.6084/m9.figshare.11743224
title: Supplementary Material for: White Matter Brain Development after Exposure to Circulating Cell-Free Hemoglobin and Hyperoxia in a Rat Pup Model

description: Neonates born with critical congenital heart defects are at risk of diffuse white matter injuries and neurodevelopmental impairments. This study aimed to determine the impact of circulating cell-free hemoglobin and hyperoxia, both present during cardiopulmonary bypass circulation, on white matter brain development. Postnatal day 6 rat pups were injected intraperitoneally with cell-free Hb or vehicle and exposed to hyperoxia (f<sub>i</sub>O<sub>2</sub> = 0.8) or normoxia (f<sub>i</sub>O<sub>2</sub> = 0.21) for 24 h. We evaluated apoptosis, myelination, and oligodendrocyte maturation with immunohistochemistry, gene and protein analyses, and in vivo diffusion tensor magnetic resonance imaging (MRI). Consistent with previous studies, we found an increase in apoptosis of oligodendrocytes as determined by TUNEL+ staining in Olig2+ cells in white matter, cortex, thalamus, and hippocampus following exposure to hyperoxia with no additional effect of cell-free Hb. A transient increase in the mRNA expression of intercellular adhesion molecule 1 at 6 h was observed following combined exposure to cell-free Hb and hyperoxia. No indications of oligodendrocyte maturational delay or hypomyelination were observed after either insult, delivered separately or combined, as determined by immunohistochemistry, Western blot, and diffusion tensor MRI. In our model, exposure to circulatory cell-free Hb, with or without concomitant hyperoxia, did not significantly alter brain white matter development.
DOI: 10.6084/m9.figshare.11743224.v1
title: Supplementary Material for: White Matter Brain Development after Exposure to Circulating Cell-Free Hemoglobin and Hyperoxia in a Rat Pup Model

description: Neonates born with critical congenital heart defects are at risk of diffuse white matter injuries and neurodevelopmental impairments. This study aimed to determine the impact of circulating cell-free hemoglobin and hyperoxia, both present during cardiopulmonary bypass circulation, on white matter brain development. Postnatal day 6 rat pups were injected intraperitoneally with cell-free Hb or vehicle and exposed to hyperoxia (f<sub>i</sub>O<sub>2</sub> = 0.8) or normoxia (f<sub>i</sub>O<sub>2</sub> = 0.21) for 24 h. We evaluated apoptosis, myelination, and oligodendrocyte maturation with immunohistochemistry, gene and protein analyses, and in vivo diffusion tensor magnetic resonance imaging (MRI). Consistent with previous studies, we found an increase in apoptosis of oligodendrocytes as determined by TUNEL+ staining in Olig2+ cells in white matter, cortex, thalamus, and hippocampus following exposure to hyperoxia with no additional effect of cell-free Hb. A transient increase in the mRNA expression of intercellular adhesion molecule 1 at 6 h was observed following combined exposure to cell-free Hb and hyperoxia. No indications of oligodendrocyte maturational delay or hypomyelination were observed after either insult, delivered separately or combined, as determined by immunohistochemistry, Western blot, and diffusion tensor MRI. In our model, exposure to circulatory cell-free Hb, with or without concomitant hyperoxia, did not significantly alter brain white matter development.
DOI: 10.6084/m9.figshare.11743203
title: D-dimer shared.xlsx

description: Complete details of information collected from patients retrospectively analysed for our project.
DOI: 10.6084/m9.figshare.11743185
title: The first leaf transcriptome of tea variety Xiangbolv under fluorine stress of 0 mg / L

description: The first leaf transcriptome of tea variety Xiangbolv under fluorine stress of 0 mg / L
DOI: 10.6084/m9.figshare.11743128
title: Mars Northern Ocean Shorelines - Published 1989-2017

description: This dataset contains mapped palaeoshorelines of an ancient northern hemisphere ocean on Mars, as published in peer reviewed journals between 1989 and 2017. This data was compiled for a literature review of ancient oceans on Mars, and can be consulted for further details of the subject (https://academic.oup.com/astrogeo/article/61/3/3.11/5836123). It is hoped that this data will be of use to researchers, amateurs, and for public engagement.<br><br>The .lpk file is best for use in ArcMap software (list by drawing order in the table of contents), and the .kmz file is best for use with GoogleEarth. Data is sorted hierarchically by publication (author, year), and then by palaeoshoreline (as named in the original publication). Palaeoshorelines which include islands or smaller closed basins in the northern lowlands have been split into sub-layers, so that continuous shorelines can be viewed more easily by switching off isolated shoreline sections. Line colours indicate the general palaeoshoreline trends: Meridiani (reds), Arabia (Green), Deuteronilus (blues). More detail on the definition of these general trends can be found in the review paper cited above.<br><br>Data for each shoreline was compiled by (1) matching the projection of the ArcMap environment to the original publication map, (2) georeferencing an image of the publication map into the ArcMap environment, and (3) tracing a line feature over the published map. Details of the justification for each palaeoshoreline can be found in the relevant publications listed below. Publication, distribution or research making use of this data should cite this dataset, and also the original publication(s) concerned.<br>
DOI: 10.6084/m9.figshare.11743128.v1
title: Mars Northern Ocean Shorelines - Published 1989-2017

description: This dataset contains mapped palaeoshorelines of an ancient northern hemisphere ocean on Mars, as published in peer reviewed journals between 1989 and 2017. This data was compiled for a literature review of ancient oceans on Mars, and can be consulted for further details of the subject (https://academic.oup.com/astrogeo/article/61/3/3.11/5836123). It is hoped that this data will be of use to researchers, amateurs, and for public engagement.<br><br>The .lpk file is best for use in ArcMap software (list by drawing order in the table of contents), and the .kmz file is best for use with GoogleEarth. Data is sorted hierarchically by publication (author, year), and then by palaeoshoreline (as named in the original publication). Palaeoshorelines which include islands or smaller closed basins in the northern lowlands have been split into sub-layers, so that continuous shorelines can be viewed more easily by switching off isolated shoreline sections. Line colours indicate the general palaeoshoreline trends: Meridiani (reds), Arabia (Green), Deuteronilus (blues). More detail on the definition of these general trends can be found in the review paper cited above.<br><br>Data for each shoreline was compiled by (1) matching the projection of the ArcMap environment to the original publication map, (2) georeferencing an image of the publication map into the ArcMap environment, and (3) tracing a line feature over the published map. Details of the justification for each palaeoshoreline can be found in the relevant publications listed below. Publication, distribution or research making use of this data should cite this dataset, and also the original publication(s) concerned.<br>
DOI: 10.11583/dtu.11743080.v1
title: Drone-based wind lidar proof-of-concept measurements

description: This is a dataset which is presented in the following publication:<br>https://www.atmos-meas-tech.net/13/521/2020/<br>