cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3729832_d8.v1
title: Additional file 7: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S16. PCGs and functional categories introgressing from wild into domesticated subpopulations. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3729820_d7
title: Additional file 7: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: FASTA file with the peptides used in the phylogenetic analysis and their NCBI accession numbers. (TXT 287 kb)
DOI: 10.6084/m9.figshare.c.3729832_d8
title: Additional file 7: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S16. PCGs and functional categories introgressing from wild into domesticated subpopulations. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3730969_d1.v1
title: Additional file 1: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG02. GFF file containing the gene ID, positions, and gene names of the 294 genes found within this linkage disequilibrium block. (TXT 108 kb)
DOI: 10.6084/m9.figshare.c.3730969_d1
title: Additional file 1: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG02. GFF file containing the gene ID, positions, and gene names of the 294 genes found within this linkage disequilibrium block. (TXT 108 kb)
DOI: 10.6084/m9.figshare.c.3730972_d1.v1
title: Additional file 10: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_BRD4_H3K27Ac_ER. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3730972_d1
title: Additional file 10: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_BRD4_H3K27Ac_ER. (XLS 54 kb)
DOI: 10.15468/dl.2hatfy
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratoscopelus maderensis (Lowe, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 291 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038421-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3730969_d2.v1
title: Additional file 2: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG07. GFF file containing the gene ID, positions, and gene names of the 306 genes found within this linkage disequilibrium block. (TXT 116 kb)
DOI: 10.6084/m9.figshare.c.3730972_d2.v1
title: Additional file 11: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_BRD4_H3K27Ac. (XLS 137 kb)
DOI: 10.6084/m9.figshare.c.3730969_d2
title: Additional file 2: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG07. GFF file containing the gene ID, positions, and gene names of the 306 genes found within this linkage disequilibrium block. (TXT 116 kb)
DOI: 10.6084/m9.figshare.c.3730972_d2
title: Additional file 11: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_BRD4_H3K27Ac. (XLS 137 kb)
DOI: 10.6084/m9.figshare.c.3730975_d2.v1
title: Additional file 2: Table S2. of Aberrant expression of ALK and EZH2 in Merkel cell carcinoma

description: The normalized RNA expression data. The table presents the normalized RNA expression data recorded in this study. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3730972_d6.v1
title: Additional file 15: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_MED1_H3K27Ac. (BED 53 kb)
DOI: 10.6084/m9.figshare.c.3730972_d6
title: Additional file 15: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_MED1_H3K27Ac. (BED 53 kb)
DOI: 10.15468/dl.c2y75f
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Senecio vulgaris L.",
 "Year 1980-2024"
 ]
}

 The dataset includes 103 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038422-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3730972_d7.v1
title: Additional file 16: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_BRD4_H3K27Ac. (BED 153 kb)
DOI: 10.6084/m9.figshare.c.3730972_d7
title: Additional file 16: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_BRD4_H3K27Ac. (BED 153 kb)
DOI: 10.15468/dl.fw8wty
title: Occurrence Download

description: A dataset containing 1908974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is naturgucker",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 1970-2024"
 ]
}

 The dataset includes 1908974 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038415-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3730972_d11.v1
title: Additional file 1: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_LNCaP_H3K27Ac. (XLS 84 kb)
DOI: 10.6084/m9.figshare.c.3731005_d2.v1
title: Additional file 2: Table S1. of Transcriptome analysis of the two unrelated fungal Î˛-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs

description: Summary of orthologous genes differentially regulated similarly in both production strains. Gene expression of similarly regulated orthologous genes grouped by their biological function; unique identifiers, fold changes, and functional descriptions are given. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3730972_d11
title: Additional file 1: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_LNCaP_H3K27Ac. (XLS 84 kb)
DOI: 10.6084/m9.figshare.c.3731005_d2
title: Additional file 2: Table S1. of Transcriptome analysis of the two unrelated fungal Î˛-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs

description: Summary of orthologous genes differentially regulated similarly in both production strains. Gene expression of similarly regulated orthologous genes grouped by their biological function; unique identifiers, fold changes, and functional descriptions are given. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3730972_d12
title: Additional file 20: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: DHS_encode. (BED 6397 kb)
DOI: 10.6084/m9.figshare.c.3730972_d12.v1
title: Additional file 20: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: DHS_encode. (BED 6397 kb)
DOI: 10.15468/dl.up2mjv
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenophryne draco Beebe, 1932",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038423-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3731008_d2.v1
title: MOESM2 of Aligning coding sequences with frameshift extension penalties

description: Additional file 2: CDS of the ten gene families. Zip file containing the CDS files at the fasta format for each of the ten gene families considered in the “Results” section.
DOI: 10.6084/m9.figshare.c.3731008_d4.v1
title: MOESM4 of Aligning coding sequences with frameshift extension penalties

description: Additional file 4: Pairwise alignments for the 3-CDS benchmark. Zip file containing the sequence file and the pairwise alignment files at the fasta format for the manually-built3-CDS benchmark considered in the “Results” section, for each of the five methods and each parameter configuration.
DOI: 10.6084/m9.figshare.c.3731005_d7.v1
title: Additional file 7: Table S3. of Transcriptome analysis of the two unrelated fungal Î˛-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs

description: List of oligonucleotides. Oligonucleotides used for reverse-transcription quantitative polymerase chain reaction (RT-qPCR). Primer specificity and orientation are given (fw: forward; rv: reverse). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3731008_d4
title: MOESM4 of Aligning coding sequences with frameshift extension penalties

description: Additional file 4: Pairwise alignments for the 3-CDS benchmark. Zip file containing the sequence file and the pairwise alignment files at the fasta format for the manually-built3-CDS benchmark considered in the “Results” section, for each of the five methods and each parameter configuration.
DOI: 10.6084/m9.figshare.c.3730972_d15.v1
title: Additional file 2: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_LNCaP_MED12_H3K27Ac. (XLS 45 kb)
DOI: 10.6084/m9.figshare.c.3730972_d15
title: Additional file 2: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_LNCaP_MED12_H3K27Ac. (XLS 45 kb)
DOI: 10.6084/m9.figshare.c.3731008_d5.v1
title: MOESM5 of Aligning coding sequences with frameshift extension penalties

description: Additional file 5: Pairwise alignments for the 21-CDS dataset. Zip file containing the sequence file and the pairwise alignment files at the fasta format for the 21-CDS benchmarkconsidered in the “Results” section, for each of the five methods and each parameter configuration.
DOI: 10.6084/m9.figshare.c.3731008_d5
title: MOESM5 of Aligning coding sequences with frameshift extension penalties

description: Additional file 5: Pairwise alignments for the 21-CDS dataset. Zip file containing the sequence file and the pairwise alignment files at the fasta format for the 21-CDS benchmarkconsidered in the “Results” section, for each of the five methods and each parameter configuration.
DOI: 10.6084/m9.figshare.c.3730972_d17.v1
title: Additional file 4 of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_VCaP_BRD4_H3K27Ac. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3730972_d16.v1
title: Additional file 3: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_VCaP_H3K27Ac. (BED 344 kb)
DOI: 10.6084/m9.figshare.c.3731005_d7
title: Additional file 7: Table S3. of Transcriptome analysis of the two unrelated fungal Î˛-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs

description: List of oligonucleotides. Oligonucleotides used for reverse-transcription quantitative polymerase chain reaction (RT-qPCR). Primer specificity and orientation are given (fw: forward; rv: reverse). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3730972_d16
title: Additional file 3: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_VCaP_H3K27Ac. (BED 344 kb)
DOI: 10.6084/m9.figshare.c.3730972_d17
title: Additional file 4 of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_VCaP_BRD4_H3K27Ac. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3730972_d22.v1
title: Additional file 9: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_H3K27Ac_ER. (XLS 87 kb)
DOI: 10.6084/m9.figshare.c.3730972_d22
title: Additional file 9: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_MCF7_H3K27Ac_ER. (XLS 87 kb)
DOI: 10.6084/m9.figshare.c.3731047_d1.v1
title: Additional file 1: of Effects of chalazia on corneal astigmatism

description: Dataset_1. The data for chalazion and corneal topography. Data were obtained from the review of medical charts of a total of 114 eyes from 64 patients between July 2013 and April 2015. Data included the size and location of chalazia and corneal topographic measurements in the chalazion group and control. (XLS 79 kb)
DOI: 10.6084/m9.figshare.c.3731047_d1
title: Additional file 1: of Effects of chalazia on corneal astigmatism

description: Dataset_1. The data for chalazion and corneal topography. Data were obtained from the review of medical charts of a total of 114 eyes from 64 patients between July 2013 and April 2015. Data included the size and location of chalazia and corneal topographic measurements in the chalazion group and control. (XLS 79 kb)
DOI: 10.6084/m9.figshare.c.3731059_d1.v1
title: MOESM1 of Gerbil: a fast and memory-efficientÂ k-mer counter with GPU-support

description: Additional file 1. The additional file contains links to all test data sets used in the experiments of the paper.
DOI: 10.6084/m9.figshare.c.3731059_d1
title: MOESM1 of Gerbil: a fast and memory-efficientÂ k-mer counter with GPU-support

description: Additional file 1. The additional file contains links to all test data sets used in the experiments of the paper.
DOI: 10.15468/dl.7van3a
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenophryne longiceps Regan, 1925",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038424-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3731086_d5.v1
title: Additional file 14: of Revealing cancer subtypes with higher-order correlations applied to imaging and omics data

description: Table S2. Kernel similarity scores between each HOCUS feature space, survival in days, and age. (XLSX 610 kb)
DOI: 10.6084/m9.figshare.c.3731086_d5
title: Additional file 14: of Revealing cancer subtypes with higher-order correlations applied to imaging and omics data

description: Table S2. Kernel similarity scores between each HOCUS feature space, survival in days, and age. (XLSX 610 kb)
DOI: 10.6084/m9.figshare.4806625
title: controls_data.rar

description: data
DOI: 10.6084/m9.figshare.c.3733087_d1.v1
title: MOESM1 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 1: Table S1. This table shows: the list of the identified proteins within all four bPPD preparations, ordered locus names of M. bovis (Mb) and M. tuberculosis, strain H37Rv, (Rv), functional categories of identified proteins, their molecular mass, gene and protein lengths and gene name and protein function. A comparative protein expression profile with two previous bPPD proteomic analysis is also shown. Differences in functional category among identified proteins are in blue; differences in molecular mass, gene and protein lengths are in red. These findings were from TubercuList, BoviList, Uniprot and KEGG databases (See text for further details).
DOI: 10.6084/m9.figshare.c.3733087_d1
title: MOESM1 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 1: Table S1. This table shows: the list of the identified proteins within all four bPPD preparations, ordered locus names of M. bovis (Mb) and M. tuberculosis, strain H37Rv, (Rv), functional categories of identified proteins, their molecular mass, gene and protein lengths and gene name and protein function. A comparative protein expression profile with two previous bPPD proteomic analysis is also shown. Differences in functional category among identified proteins are in blue; differences in molecular mass, gene and protein lengths are in red. These findings were from TubercuList, BoviList, Uniprot and KEGG databases (See text for further details).
DOI: 10.6084/m9.figshare.c.3733102_d1.v1
title: MOESM1 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 1: Table S1. Clinical profile of the patients included in the study.
DOI: 10.6084/m9.figshare.c.3733087_d2.v1
title: MOESM2 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 2: Table S2. The list of identified proteins in bPPDs. Sequence coverage, number of unique peptides, as well as total weighted spectra as a semi-quantitative measure of protein abundance, are reported.
DOI: 10.6084/m9.figshare.c.3733102_d1
title: MOESM1 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 1: Table S1. Clinical profile of the patients included in the study.
DOI: 10.6084/m9.figshare.c.3733102_d3
title: MOESM3 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 3: Table S2. Up regulation of significantly differentially regulated genes in ocular Escherichia coli L-1216/2010 biofilm cells versus ocular E. coli L-1339/2013 cells which do not form a biofilm as the control.
DOI: 10.6084/m9.figshare.c.3733102_d4.v1
title: MOESM4 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 4: Table S3. Down regulation of significantly differentially regulated genes in ocular Escherichia coli L-1216/2010 biofilm cells versus ocular E. coli L-1339/2013 cells which do not form a biofilm as the control.
DOI: 10.6084/m9.figshare.c.3733102_d4
title: MOESM4 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 4: Table S3. Down regulation of significantly differentially regulated genes in ocular Escherichia coli L-1216/2010 biofilm cells versus ocular E. coli L-1339/2013 cells which do not form a biofilm as the control.
DOI: 10.15468/dl.kgesbd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenophryne melanorhabdus Regan & Trewavas, 1932",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038425-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3733138_d6
title: Additional file 1: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Technical Data of RNA-Seq (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3733159_d2.v1
title: Additional file 2: Table S1. of Neurogenetic analysis of childhood disintegrative disorder

description: CDD families for genetic analysis. Table S2. Rare non-synonymous and synonymous variants from WES unique to probands or unaffected sibling controls. Table S3. Rates of variants from WES in CDD probands and unaffected sibling controls. Table S4. Genes represented once in the core probe set (Kang et al. 2011) and used for expression analysis. Table S5. Median expression values (Log2-transformed signal intensity) for CDD candidate genes by time period and brain region. Table S6. Difference in median expression values (Log2-transformed signal intensity) between non-neocortical and neocortical regions for gene sets by time period. Table S7. Pearson correlation coefficients for all pairwise combinations of CDD candidate genes. Table S8. Clinical characteristics of subjects studied by neuroimaging. Table S9. Features of CDD, LFASD, HFASD, and TD cohorts for neuroimaging analysis. Table S10. List of brain regions where TD:discovery exhibits significant faces &gt; houses activation. Table S11. Mean % signal change (faces &gt; houses) for each cohort in Fig. 4b. Table S12. Mean % signal change (faces &gt; houses) for each cohort in Figure S2. Table S13. List of brain regions where CDD exhibits significant faces &gt; houses activation. Table S14. Mean % signal change (faces &gt; houses) for each cohort in Fig. 5b. Table S15. Clinical characteristics of subjects studied by eye tracking. Table S16. Features of CDD, LFASD, HFASD, and TD cohorts in eye-tracking analysis. Table S17. Whole-exome sequencing quality metrics. Table S18. Features of SSC probands with and without regression by IQ and autism severity. (XLSX 364 kb)
DOI: 10.6084/m9.figshare.c.3733138_d7.v1
title: Additional file 2: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Plant genes differentially expressed after infection with Cp20.1, Î cptf1, Î cpcdc42, mock. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3733138_d8.v1
title: Additional file 3: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: GO term distribution of in planta expressed Cp20.1 genes (XLSX 8 kb)