cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v4nzb5
title: Occurrence Download

description: A dataset containing 642616987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Animalia)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry MULTIPOLYGON (((-130.955537568 62.353274339,-163.287381656099 61.7824426156614,-167.364854608186 52.9479178861406,-164.374707776655 50.6373498799582,-150.7831312697 55.1225701272534,-131.754924159963 49.5500237594018,-120.955537568 27.353274339,-84.456237915759 -0.059230490984646,-83.9125748554808 -16.2332065342613,-75.7576289513077 -23.8444893781562,-79.6991861383247 -52.5227158078316,-66.243525396439 -61.6290720674916,-61.0787263237961 -53.2022946331794,-53.6033592449707 -40.4262127166415,-33.7596575448162 -19.4951848959305,-31.3131737735643 -3.18529308758433,-54.147022305249 10.8140307145795,-75.955537568 17.353274339,-71.2724087040125 37.3176049031421,-57.8167479621269 44.2832878629567,-49.7977178230233 58.3845484889226,-62.7097155046307 63.6852633266352,-69.0977564628997 48.5986134039149,-81.4660910842289 33.7837950113338,-99.2030984258054 29.7403010005146,-97.4701724211686 17.949608380731,-108.139559979128 25.832722754765,-114.187811524723 31.1334375924775,-119.964231540179 47.8510766960324,-130.955537568 62.353274339)))"
 ]
}

 The dataset includes 642616987 records from 9065 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036386-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7718600
title: Natural variation of <i>Arabidopsis thaliana</i> root architecture in response to nitrate availability

description: Root system architecture (RSA) plays a crucial role in nutrient and water uptake in plants. RSA can be modulated to improve nitrogen use efficiency (NUE) of crops, decreasing the need for fertilization. In this study, we analyzed 12 root parameters in 48 Arabidopsis accessions grown in media with low or high nitrogen (N). Low N repressed six root traits and enhanced six others. A principal component analysis showed that six components contributed to 90.08% of N availability. The primary component contributed to 35.64% of the variation and was associated with LR characteristics. The 48 Arabidopsis accessions were divided into five response groups. Stw-0 had the highest biomass production and a high N concentration in both roots and shoots, independent of growth conditions. H55 had numerous LRs at low N. Our results provide N-responsive parameters suitable for mapping of quantitative trait loci related with root morphology.
DOI: 10.6084/m9.figshare.11913054
title: Additional file 5 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 5: Table S5. Target function of differentially expressed miRNAs during grain filling under HN and LN treatments.
DOI: 10.6084/m9.figshare.14526516.v1
title: Additional file 1 of Serum proteomic profiling in patients with advanced Schistosoma japonicum-induced hepatic fibrosis

description: Additional file 1: Table S1. Differentially expressed proteins of serum samples between SHF with F2 and healthy controls (sheet 1). Table S2. Differentially expressed proteins of serum samples between SHF with F4 and SHF with F2 (sheet 2). Table S3. KEGG pathway analysis of the differentially expressed proteins of serum samples between SHF with F2 and healthy controls (fold change of ≥  ± 1.5) (sheet 3). Table S4. KEGG pathway analysis of the differentially expressed proteins of serum samples between SHF with F4 and SHF with F2 (fold change of ≥  ± 1.5) (sheet 4).
DOI: 10.6084/m9.figshare.7718600.v1
title: Natural variation of <i>Arabidopsis thaliana</i> root architecture in response to nitrate availability

description: Root system architecture (RSA) plays a crucial role in nutrient and water uptake in plants. RSA can be modulated to improve nitrogen use efficiency (NUE) of crops, decreasing the need for fertilization. In this study, we analyzed 12 root parameters in 48 Arabidopsis accessions grown in media with low or high nitrogen (N). Low N repressed six root traits and enhanced six others. A principal component analysis showed that six components contributed to 90.08% of N availability. The primary component contributed to 35.64% of the variation and was associated with LR characteristics. The 48 Arabidopsis accessions were divided into five response groups. Stw-0 had the highest biomass production and a high N concentration in both roots and shoots, independent of growth conditions. H55 had numerous LRs at low N. Our results provide N-responsive parameters suitable for mapping of quantitative trait loci related with root morphology.
DOI: 10.6084/m9.figshare.11913060
title: Additional file 6 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 6: Table S6. Wheat grain miRNAs that are differentially expressed between the HN and LN treatments.
DOI: 10.6084/m9.figshare.14526410.v1
title: Additional file 2 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 2: Table S2. Strains of clinically isolated P. aeruginosa used in this study downloaded from Pseudomonas genome database based on the availability of complete genomes
DOI: 10.6084/m9.figshare.14526413
title: Additional file 3 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 3: Table S3. Detail information of four large insertion regions which absent in P. aeruginosa PAO1 genome but exist in P. aeruginosa JNQH-PQ57 genome
DOI: 10.6084/m9.figshare.7194359.v1
title: Additional file 3: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: List of different genes between NT groups and Invivo group. Two group Ensembl gene IDs were listed. One is different genes between NTC embryos and Invivo embryos. The other is different genes between NTM embryos and Invivo embryos. (XLSX 182 kb)
DOI: 10.6084/m9.figshare.7194404
title: Additional file 6: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: Ensembl gene IDs of selected cluster genes. Ensembl gene IDs were listed in the four columns. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.7194347
title: MOESM14 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 14: Table S10. Â LncRNAs and pseudogenesÂ related to the metastasis, pathologic tumour stage, and tumour pathologic PT.
DOI: 10.6084/m9.figshare.7194347.v1
title: MOESM14 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 14: Table S10. Â LncRNAs and pseudogenesÂ related to the metastasis, pathologic tumour stage, and tumour pathologic PT.
DOI: 10.6084/m9.figshare.7194356
title: MOESM1 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 1: Table S11. Â All primers used in Real-time PCR.
DOI: 10.6084/m9.figshare.7194338.v1
title: Additional file 2: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: FPKM values of every samples. All the genes' Ensembl gene ID and FPKM value of 60 samples were listed. (XLS 20764 kb)
DOI: 10.6084/m9.figshare.7194398.v1
title: MOESM4 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 4: Table S3. Â Alterations of LncRNAs, including mutation, copy number alteration and expression.
DOI: 10.6084/m9.figshare.7194419.v1
title: Additional file 7: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: Volcano plots in Fig 3-6. Ensembl gene IDs of each volcano plots in Fig 3-6 were listed. (XLSX 133 kb)
DOI: 10.6084/m9.figshare.11913066
title: Additional file 8 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 8: Table S7. Oligonucleotide primers used for qRT-PCR assays in this study.
DOI: 10.6084/m9.figshare.7194359
title: Additional file 3: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: List of different genes between NT groups and Invivo group. Two group Ensembl gene IDs were listed. One is different genes between NTC embryos and Invivo embryos. The other is different genes between NTM embryos and Invivo embryos. (XLSX 182 kb)
DOI: 10.6084/m9.figshare.11913030.v1
title: Additional file 1 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 1: Table S1. Illumina DNA sequencing data for the small RNA libraries.
DOI: 10.6084/m9.figshare.11913036
title: Additional file 2 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 2: Table S2. miRNAs identified in this study.
DOI: 10.6084/m9.figshare.11913042
title: Additional file 3 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 3: Table S3. Novel miRNAs identified in developing wheat grains at two different N levels.
DOI: 10.6084/m9.figshare.11913048
title: Additional file 4 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 4: Table S4. Conserved and novel miRNAs that are differentially expressed during wheat grain development.
DOI: 10.6084/m9.figshare.11913042.v1
title: Additional file 3 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 3: Table S3. Novel miRNAs identified in developing wheat grains at two different N levels.
DOI: 10.6084/m9.figshare.7194356.v1
title: MOESM1 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 1: Table S11. Â All primers used in Real-time PCR.
DOI: 10.6084/m9.figshare.7194386
title: MOESM3 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 3: Table S2.  A total of 2553 LncRNAs and 8901 of pseudogenes were recognized by the cBioPortal database.
DOI: 10.6084/m9.figshare.14526419.v1
title: Additional file 5 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 5: Table S5. Detail information of prophages identified in P. aeruginosa JNQH-PQ57 genome
DOI: 10.6084/m9.figshare.7194404.v1
title: Additional file 6: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: Ensembl gene IDs of selected cluster genes. Ensembl gene IDs were listed in the four columns. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.14526413.v1
title: Additional file 3 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 3: Table S3. Detail information of four large insertion regions which absent in P. aeruginosa PAO1 genome but exist in P. aeruginosa JNQH-PQ57 genome
DOI: 10.6084/m9.figshare.15058288.v1
title: Additional file 6 of Modeling the temporal dynamics of cervicovaginal microbiota identifies targets that may promote reproductive health

description: Additional file 5. Supplementary file 1 Taxonomic assignment to ASVs.
DOI: 10.6084/m9.figshare.7194398
title: MOESM4 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 4: Table S3. Â Alterations of LncRNAs, including mutation, copy number alteration and expression.
DOI: 10.6084/m9.figshare.7057109
title: MOESM7 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

description: Additional file 7: Table S4. Genetic markers of interest including carbohydrate-active enzymes (CAZymes), markers with KEGG orthology (KOs) for xylose metabolism, and protein families (pfams) markers for syntrophy and methanogenesis, which were derived from [72] and MetaCyc.org.
DOI: 10.6084/m9.figshare.7057109.v1
title: MOESM7 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

description: Additional file 7: Table S4. Genetic markers of interest including carbohydrate-active enzymes (CAZymes), markers with KEGG orthology (KOs) for xylose metabolism, and protein families (pfams) markers for syntrophy and methanogenesis, which were derived from [72] and MetaCyc.org.
DOI: 10.6084/m9.figshare.7194419
title: Additional file 7: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: Volcano plots in Fig 3-6. Ensembl gene IDs of each volcano plots in Fig 3-6 were listed. (XLSX 133 kb)
DOI: 10.6084/m9.figshare.7194338
title: Additional file 2: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

description: FPKM values of every samples. All the genes' Ensembl gene ID and FPKM value of 60 samples were listed. (XLS 20764 kb)
DOI: 10.6084/m9.figshare.7194413
title: MOESM5 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 5: Table S4. Â 27 LncRNAs were closely related to prognosis.
DOI: 10.6084/m9.figshare.11913177.v1
title: Additional file 13 of Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

description: Additional file 13. Data concerning the disease index.
DOI: 10.6084/m9.figshare.11913183.v1
title: Additional file 14 of Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

description: Additional file 14. qPCR data.
DOI: 10.6084/m9.figshare.14526422
title: Additional file 6 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 6: Table S6. Detail information of ICEJNPA57
DOI: 10.6084/m9.figshare.7194455
title: MOESM8 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 8: Table S7. Â 45Â pseudogenes were significantly related to prognosis.
DOI: 10.6084/m9.figshare.11912949
title: Additional file 2 of Loci associated with variation in gene expression and growth in juvenile salmon are influenced by the presence of a growth hormone transgene

description: Additional file 2: Figure S1. Gene Ontology (GO) Biological Process categories for the differentially expressed genes (DEGs) identified in comparisons between transgenotypes (transgenic fish, T, and non-transgenic fish, NT) for large and small fish. Figure S2. Box plots represent the median and 25% quantiles for relative gene expression for large and small transgenic (TLarge; TSmall) and nontransgenic (NT Large and NTSmall) fish. Groups with the different letters are significantly different (Tukey HSD, p &lt; 0.05). Gene abbreviations are as for Table S2. Figure S3. Distribution of SNPs across Coho Salmon linkage groups. Figure S4. Histogram of lengths (cm) for transgenic (T) and non-transgenic (NT) fish at the time of sampling. A subset of these fish were used for further analysis as described in the text. Figure S5. Manhattan plots of SNP number and linkage group (1–30, and unassigned (U)) for expression traits in transgenic (T) and non-transgenic (NT) fish. Significant SNPs (FDR = 0.05) are indicated by red triangles; dotted line indicates significant q value. Name abbreviations are as for Table S2. Figure S6. Manhattan plots of SNP number and linkage group (1–30, and unassigned (U)) for weight, length and condition factor in transgenic (T) and non-transgenic (NT) fish. Significant SNPs (FDR = 0.05) are indicated by red triangles; the dotted line indicates the significant q value.
DOI: 10.6084/m9.figshare.11913447.v2
title: Fabrication of excellent anti-corrosion epoxy coating based on GON-An composites

description: Polyaniline/graphene oxide (GON-An) composites were synthesized by chemically grafting <i>p</i>-phenylenediamine (PPDA)-modified graphene oxide (GO) with polyaniline (PANI), which was confirmed by FT-IR, XRD, SEM, TEM, Raman spectroscopy, and XPS analyses. The electrochemical impedance spectroscopy test, brine immersion, and Tafel slopes analysis revealed that compared with GO and PPDA-modified GO (GON), GON-An composites which combined the unique corrosion resistance of both PANI and GO exhibited relatively obvious superiority in improving the corrosion resistance of epoxy coating with the same contents. After being immersed in brine for 35 days, the composite epoxy coating containing 1 wt-% of GON-An(1:2) composites in which the mass ratio of GO and PANI was 1:2, possessed a high impedance of 4×10<sup>9</sup> Ω cm<sup>2</sup>, a high corrosion potential of −0.25 V, and a low corrosion current of 4.119×10<sup>−11</sup> A cm<sup>−2</sup>. Furthermore, the anti-corrosive mechanisms of PANI/GO epoxy coatings were discussed.
DOI: 10.6084/m9.figshare.11912949.v1
title: Additional file 2 of Loci associated with variation in gene expression and growth in juvenile salmon are influenced by the presence of a growth hormone transgene

description: Additional file 2: Figure S1. Gene Ontology (GO) Biological Process categories for the differentially expressed genes (DEGs) identified in comparisons between transgenotypes (transgenic fish, T, and non-transgenic fish, NT) for large and small fish. Figure S2. Box plots represent the median and 25% quantiles for relative gene expression for large and small transgenic (TLarge; TSmall) and nontransgenic (NT Large and NTSmall) fish. Groups with the different letters are significantly different (Tukey HSD, p &lt; 0.05). Gene abbreviations are as for Table S2. Figure S3. Distribution of SNPs across Coho Salmon linkage groups. Figure S4. Histogram of lengths (cm) for transgenic (T) and non-transgenic (NT) fish at the time of sampling. A subset of these fish were used for further analysis as described in the text. Figure S5. Manhattan plots of SNP number and linkage group (1–30, and unassigned (U)) for expression traits in transgenic (T) and non-transgenic (NT) fish. Significant SNPs (FDR = 0.05) are indicated by red triangles; dotted line indicates significant q value. Name abbreviations are as for Table S2. Figure S6. Manhattan plots of SNP number and linkage group (1–30, and unassigned (U)) for weight, length and condition factor in transgenic (T) and non-transgenic (NT) fish. Significant SNPs (FDR = 0.05) are indicated by red triangles; the dotted line indicates the significant q value.
DOI: 10.6084/m9.figshare.7194386.v1
title: MOESM3 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 3: Table S2.  A total of 2553 LncRNAs and 8901 of pseudogenes were recognized by the cBioPortal database.
DOI: 10.6084/m9.figshare.11913084.v1
title: Additional file 4 of Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

description: Table S3. Differentially accessible regions during fin regeneration. a DARs with increasing signals in sp7+ cells during fin regeneration. b DARs with decreasing signals in sp7+ cells during fin regeneration. c DARs with increasing signals in sp7− cells during fin regeneration. d DARs with decreasing signals in sp7− cells during fin regeneration.
DOI: 10.6084/m9.figshare.11913171.v1
title: Additional file 12 of Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

description: Additional file 12. Data concerning the H2O2 content.
DOI: 10.6084/m9.figshare.7194428.v1
title: MOESM6 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 6: Table S5. Â Expression alterations of LncRNAs in all cases with mRNA data.
DOI: 10.6084/m9.figshare.11913177
title: Additional file 13 of Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

description: Additional file 13. Data concerning the disease index.
DOI: 10.6084/m9.figshare.11913183
title: Additional file 14 of Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

description: Additional file 14. qPCR data.
DOI: 10.6084/m9.figshare.11913030
title: Additional file 1 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 1: Table S1. Illumina DNA sequencing data for the small RNA libraries.
DOI: 10.6084/m9.figshare.11913036.v1
title: Additional file 2 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 2: Table S2. miRNAs identified in this study.
DOI: 10.6084/m9.figshare.14526477.v1
title: Additional file 4 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 4. Orthologous gene pairs in synteny analysis.