cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5857506
title: Additional file 4: of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: PDB file A. SOD1 X-ray structure (PDBID: 2V0A) with b-factors being set to values of mechanical stiffness, ÎşCu,i, between the copper ion of chain A and residues of SOD1. (PDB 342Â kb)
DOI: 10.6084/m9.figshare.5857506.v1
title: Additional file 4: of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: PDB file A. SOD1 X-ray structure (PDBID: 2V0A) with b-factors being set to values of mechanical stiffness, ÎşCu,i, between the copper ion of chain A and residues of SOD1. (PDB 342Â kb)
DOI: 10.6084/m9.figshare.5857494
title: Additional file 3: Table S2. of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: Table H with Îž j m $$ {\xi}_j^m $$ distribution. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5857494.v1
title: Additional file 3: Table S2. of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: Table H with Îž j m $$ {\xi}_j^m $$ distribution. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5857482
title: Additional file 2 of xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

description: Comparisons with commonly used GI finding software. A tab-delimited text file containing comparisons between xenoGI and four other commonly used GI finding programs: SIGI-HMM, IslandPick, IslandPath-DIMOB, and Islander. These were done using validation ranges from the same five species used for in TableÂ 1 and Additional fileÂ 1. Included are data for base-wise coverage and the proportion of validation ranges covered by a single predicted island. (TSV 0.834 kb)
DOI: 10.6084/m9.figshare.5857482.v1
title: Additional file 2 of xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

description: Comparisons with commonly used GI finding software. A tab-delimited text file containing comparisons between xenoGI and four other commonly used GI finding programs: SIGI-HMM, IslandPick, IslandPath-DIMOB, and Islander. These were done using validation ranges from the same five species used for in TableÂ 1 and Additional fileÂ 1. Included are data for base-wise coverage and the proportion of validation ranges covered by a single predicted island. (TSV 0.834 kb)
DOI: 10.6084/m9.figshare.5857467
title: Additional file 1 of xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

description: A more detailed description of the correspondence between xenoGI islands and validation islands. A tab-delimited text file containing each validation range used in the five species we looked at. Includes the assemblies used to compare with each strain and the tree. For each validation range gives the base-wise coverage, the amount of extra coverage, the number of overlapping xenoGI islands and any comments. (TSV 6 kb)
DOI: 10.6084/m9.figshare.5857467.v1
title: Additional file 1 of xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

description: A more detailed description of the correspondence between xenoGI islands and validation islands. A tab-delimited text file containing each validation range used in the five species we looked at. Includes the assemblies used to compare with each strain and the tree. For each validation range gives the base-wise coverage, the amount of extra coverage, the number of overlapping xenoGI islands and any comments. (TSV 6 kb)
DOI: 10.6084/m9.figshare.5857464
title: Additional file 1: Table S1. of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: Table of hydrogen bondsâ SEA. (XLSX 116Â kb)
DOI: 10.6084/m9.figshare.5857464.v1
title: Additional file 1: Table S1. of Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

description: Table of hydrogen bondsâ SEA. (XLSX 116Â kb)
DOI: 10.6084/m9.figshare.5857437
title: Additional file 1: of Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

description: Supplementary tables. Table S1. FV2 genome size estimation by flow-cytometry analysis. Table S2. Validation of whole-genome de novo assembly using CEGMA and BUSCO. Table S3. RNA sequencing from this study. Table S4. Functional annotation of FV2 novel genes. Table S5. Genes present in B73 and deleted or partly-deleted in FV2. Table S6. Blast best hit for F2-specific genes against the NCBI NR sequences. Table S7. DNAseq used for SNP detection. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.5857437.v1
title: Additional file 1: of Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

description: Supplementary tables. Table S1. FV2 genome size estimation by flow-cytometry analysis. Table S2. Validation of whole-genome de novo assembly using CEGMA and BUSCO. Table S3. RNA sequencing from this study. Table S4. Functional annotation of FV2 novel genes. Table S5. Genes present in B73 and deleted or partly-deleted in FV2. Table S6. Blast best hit for F2-specific genes against the NCBI NR sequences. Table S7. DNAseq used for SNP detection. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.5857413
title: Additional file 2: Table S2. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

description: Opsin ω-tree maximum likelihood estimates. The ω-tree was estimated under the assumption of the branch-specific free-ratios model using the Meredith et al. (2011) tree topology. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5857413.v1
title: Additional file 2: Table S2. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

description: Opsin ω-tree maximum likelihood estimates. The ω-tree was estimated under the assumption of the branch-specific free-ratios model using the Meredith et al. (2011) tree topology. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5857401
title: Additional file 1: of Acute and sub-acute oral toxicity of Dracaena cinnabari resin methanol extract in rats

description: The raw dataÂ of body weight, organâ s weight, food consumption and water intake, and hematological and biochemical parameters of each rat in the acute and subacute oral toxicity tests. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.5857374
title: Additional file 10: Table S7. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

description: Dataset of the eco-morphological variables for the studied mammalian species. Variables: activity pattern (nocturnal, cathemeral and diurnal), VS and UVS OPN1sw1 sensitivity, orbit convergence (degrees, °) and visual acuity (cycle per degree, cpd). OPN1sw1 inactive copies were indicated with an asterisk (*) in the column of the sw1 86 site. Data retrieved from the references [5, 11, 65–72]. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5857374.v1
title: Additional file 10: Table S7. of Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

description: Dataset of the eco-morphological variables for the studied mammalian species. Variables: activity pattern (nocturnal, cathemeral and diurnal), VS and UVS OPN1sw1 sensitivity, orbit convergence (degrees, °) and visual acuity (cycle per degree, cpd). OPN1sw1 inactive copies were indicated with an asterisk (*) in the column of the sw1 86 site. Data retrieved from the references [5, 11, 65–72]. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5857365
title: Additional file 12: Table S2. of Systematic comparison of small RNA library preparation protocols for next-generation sequencing

description: Oligonucleotides used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5857365.v1
title: Additional file 12: Table S2. of Systematic comparison of small RNA library preparation protocols for next-generation sequencing

description: Oligonucleotides used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5857347
title: Additional file 3: Table S3. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Likely PCNVs, VUS and likely benign variants detected in patients with syndromic obesity (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5857347.v1
title: Additional file 3: Table S3. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Likely PCNVs, VUS and likely benign variants detected in patients with syndromic obesity (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5857341
title: Additional file 10: Table S1. of Systematic comparison of small RNA library preparation protocols for next-generation sequencing

description: (XLSX 154 kb)
DOI: 10.6084/m9.figshare.5857341.v1
title: Additional file 10: Table S1. of Systematic comparison of small RNA library preparation protocols for next-generation sequencing

description: (XLSX 154 kb)
DOI: 10.6084/m9.figshare.5857326
title: Additional file 2: Table S2. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Frequencies of phenotypes pairs segregating together in patients with and without pCNVs. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5857326.v1
title: Additional file 2: Table S2. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Frequencies of phenotypes pairs segregating together in patients with and without pCNVs. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5857317
title: Additional file 1: Table S1. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Full description of clinical findings in patients enrolled in this study. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5857317.v1
title: Additional file 1: Table S1. of Chromosomal microarray analysis in the genetic evaluation of 279 patients with syndromic obesity

description: Full description of clinical findings in patients enrolled in this study. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5857281
title: Additional file 9: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Annotated coding sequences present in the 214 de novo assembled genomes in the validation set. Annotated coding sequences present in at least one, but not in all of the 214 de novo assembled genomes in the validation set. (XLSX 1309Â kb)
DOI: 10.6084/m9.figshare.5857281.v1
title: Additional file 9: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Annotated coding sequences present in the 214 de novo assembled genomes in the validation set. Annotated coding sequences present in at least one, but not in all of the 214 de novo assembled genomes in the validation set. (XLSX 1309Â kb)
DOI: 10.6084/m9.figshare.5857263
title: Additional file 8: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Annotated coding sequences present in the 108 de novo assembled genomes in the discovery set. Annotated coding sequences present in at least one, but not in all of the 108 de novo assembled genomes in the discovery set. (XLSX 1286Â kb)
DOI: 10.6084/m9.figshare.5857263.v1
title: Additional file 8: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Annotated coding sequences present in the 108 de novo assembled genomes in the discovery set. Annotated coding sequences present in at least one, but not in all of the 108 de novo assembled genomes in the discovery set. (XLSX 1286Â kb)
DOI: 10.6084/m9.figshare.5857191
title: Additional file 9: Table S6. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Other raw data on the Lake Engervann threeespine stickleback. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5857191.v1
title: Additional file 9: Table S6. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Other raw data on the Lake Engervann threeespine stickleback. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5857179
title: Additional file 3: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Merged SNP lists consisting of variable positions for the 214 strains in the validation set. File showing all common non-synonymous SNPs in the 214 isolates in the validation set, including their p-value for association with the TB disease phenotype. (XLSX 8758Â kb)
DOI: 10.6084/m9.figshare.5857179.v1
title: Additional file 3: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Merged SNP lists consisting of variable positions for the 214 strains in the validation set. File showing all common non-synonymous SNPs in the 214 isolates in the validation set, including their p-value for association with the TB disease phenotype. (XLSX 8758Â kb)
DOI: 10.6084/m9.figshare.5857155
title: Additional file 2: of CoVaCS: a consensus variant calling system

description: Supplementary Tables S1 to S5 (XLS 18 kb)
DOI: 10.6084/m9.figshare.5857155.v1
title: Additional file 2: of CoVaCS: a consensus variant calling system

description: Supplementary Tables S1 to S5 (XLS 18 kb)
DOI: 10.6084/m9.figshare.12894614
title: R0189_20171010a_videos

description: Rat 0189, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.5857149
title: Additional file 2: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Merged SNP lists consisting of variable positions for the 108 strains in the discovery set. File showing all common non-synonymous SNPs in the 108 isolates in the discovery set, including their p-value for association with the TB disease phenotype. (XLSX 2729Â kb)
DOI: 10.6084/m9.figshare.5857149.v1
title: Additional file 2: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: Merged SNP lists consisting of variable positions for the 108 strains in the discovery set. File showing all common non-synonymous SNPs in the 108 isolates in the discovery set, including their p-value for association with the TB disease phenotype. (XLSX 2729Â kb)
DOI: 10.6084/m9.figshare.5857116
title: Additional file 5: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: List of indicator species for all classifications. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5857116.v1
title: Additional file 5: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: List of indicator species for all classifications. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5857113
title: Additional file 5: Table S4. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Eda locus Stn382, body length, sex and location for the Lake Engervann threespine stickleback. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5857113.v1
title: Additional file 5: Table S4. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Eda locus Stn382, body length, sex and location for the Lake Engervann threespine stickleback. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5857098
title: Additional file 4: Table S3. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Microsatellite raw data used for the Lake Engervann threespine stickleback. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.5857098.v1
title: Additional file 4: Table S3. of Ongoing niche differentiation under high gene flow in a polymorphic brackish water threespine stickleback (Gasterosteus aculeatus) population

description: Microsatellite raw data used for the Lake Engervann threespine stickleback. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.5857095
title: Additional file 4: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: Confusion matrices from random forest analysis. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5857095.v1
title: Additional file 4: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: Confusion matrices from random forest analysis. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5857092
title: Additional file 14: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: De novo genome assembly statistics. File listing different measures used to check the quality of the de novo genome assemblies. (XLS 73Â kb)
DOI: 10.6084/m9.figshare.5857092.v1
title: Additional file 14: of Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis

description: De novo genome assembly statistics. File listing different measures used to check the quality of the de novo genome assemblies. (XLS 73Â kb)
DOI: 10.6084/m9.figshare.5857074
title: Additional file 3: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: Full contingency tables of cross-tabulated plot frequencies used in correspondence analysis. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5857074.v1
title: Additional file 3: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: Full contingency tables of cross-tabulated plot frequencies used in correspondence analysis. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5857059
title: Additional file 2: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: List of all classes in all classifications used in this analysis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5857059.v1
title: Additional file 2: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: List of all classes in all classifications used in this analysis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5857038
title: Additional file 1: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: All variables considered in random forest analysis. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5857038.v1
title: Additional file 1: of Classifying forest inventory data into species-based forest community types at broad extents: exploring tradeoffs among supervised and unsupervised approaches

description: All variables considered in random forest analysis. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5857017
title: MOESM1 of Time-series lipidomic analysis of the oleaginous green microalga species Ettlia oleoabundans under nutrient stress

description: Additional file 1. Three additional figures and two additional tables.
DOI: 10.6084/m9.figshare.5857017.v1
title: MOESM1 of Time-series lipidomic analysis of the oleaginous green microalga species Ettlia oleoabundans under nutrient stress

description: Additional file 1. Three additional figures and two additional tables.
DOI: 10.6084/m9.figshare.5856936
title: SupplementaryTable2_alfredHealthInfections.csv

description: supplementary table 2 for paper
DOI: 10.6084/m9.figshare.5856936.v1
title: SupplementaryTable2_alfredHealthInfections.csv

description: supplementary table 2 for paper
DOI: 10.6084/m9.figshare.5856918
title: SupplementaryTable1_alfredHealthInfections.csv

description: supplementary table 1 for paper
DOI: 10.6084/m9.figshare.5856918.v1
title: SupplementaryTable1_alfredHealthInfections.csv

description: supplementary table 1 for paper
DOI: 10.6084/m9.figshare.5856912
title: Transcriptome data of the zebra bullhead shark

description: Supplementary data of Onimaru et al., "A de novo transcriptome assembly of the zebra bullhead shark,<i> </i><i>Heterodontus zebra</i>"
DOI: 10.6084/m9.figshare.5856912.v1
title: Transcriptome data of the zebra bullhead shark

description: Supplementary data of Onimaru et al., "A de novo transcriptome assembly of the zebra bullhead shark,<i> </i><i>Heterodontus zebra</i>"
DOI: 10.6084/m9.figshare.5856912.v2
title: Transcriptome data of the zebra bullhead shark

description: Supplementary data of Onimaru et al., "A de novo transcriptome assembly of the zebra bullhead shark,<i> </i><i>Heterodontus zebra</i>"
DOI: 10.6084/m9.figshare.5856912.v3
title: Transcriptome data of the zebra bullhead shark

description: Supplementary data of Onimaru et al., "A de novo transcriptome assembly of the zebra bullhead shark,<i> </i><i>Heterodontus zebra</i>"
DOI: 10.6084/m9.figshare.5856912.v4
title: Transcriptome data of the zebra bullhead shark

description: Supplementary data of Onimaru et al., "A de novo transcriptome assembly of the zebra bullhead shark,<i> </i><i>Heterodontus zebra</i>"
DOI: 10.6084/m9.figshare.5856900
title: pd_models_schema

description: Bond-based, ordinary and non-ordinary material
DOI: 10.6084/m9.figshare.5856900.v1
title: pd_models_schema

description: Bond-based, ordinary and non-ordinary material
DOI: 10.6084/m9.figshare.5856894
title: vfm_3pt_bending_schema

description: Virtual displacements applied to the three-point bending test.
DOI: 10.6084/m9.figshare.5856894.v2
title: vfm_3pt_bending_schema

description: Virtual displacements applied to the three-point bending test.
DOI: 10.6084/m9.figshare.5856894.v1
title: vfm_3pt_bending_schema

description: The virtual displacements applied to the three-point bending test.
DOI: 10.6084/m9.figshare.5856891
title: pd_emu_nd_schema

description: 2D EMU-ND and its mesh with a constant mesh size. Vi is the surrounding volume of the node i located at xi and Hi its discrete family.
DOI: 10.6084/m9.figshare.5856891.v1
title: pd_emu_nd_schema

description: 2D EMU-ND and its mesh with a constant mesh size. Vi is the surrounding volume of the node i located at xi and Hi its discrete family.