cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6499426
title: Gradients4_TN397_15N13C_2022-03-15

description: Cruise Name: Gradients 4 , TN397 Vessel: R/V Thompson Funding: Simons Collaboration on Ocean Processes and Ecology (SCOPE) Dataset description: Standard protocols were used to measure in vitro primary productivity via the 13C radiotracer method [Lengendre et al., 1996] and N2-fixation rate measurements via 15N2 isotopic gas method described by Montoya et al., 1996. Briefly, water samples were collected before dawn in ~4.3L polycarbonate bottles, a total of 4ml of enriched 15N2 gas was added via syringe. Bottles were then injected with 1 ml of 47mM 13C bicarbonate stock and gently mixed by inversion. Bottles were incubated either on deck in incubators screened to 48% of surface irradiance and plumbed with flow through surface seawater for temperature regulation or on drifting arrays that allowed for incubations to happen at original light levels. All bottles were incubated for ~ 24hr. Time zero bottles were also collected and sacrificed for each station/depth. Following dawn to dawn incubations, each sample was filtered onto a combusted 25mm glass fiber filter, filters were folded in half and placed in combusted aluminum foil and stored at -20°C for later analysis. Post-cruise, all filters were thawed and dried overnight at 60°C. Samples were then balled into Sn boats and plated for analysis. The carbon and nitrogen isotopic composition (13C and 15N, respectively) were analyzed by continuous-flow isotope ratio mass spectrometry by the Biogeochemical Stable Isotope Facility at University of Hawaii (https://www.soest.hawaii.edu/GG/isotope_biogeochem/index_files/Page532.htm).
DOI: 10.5281/zenodo.6499425
title: Gradients4_TN397_15N13C_2022-03-15

description: Cruise Name: Gradients 4 , TN397 Vessel: R/V Thompson Funding: Simons Collaboration on Ocean Processes and Ecology (SCOPE) Dataset description: Standard protocols were used to measure in vitro primary productivity via the 13C radiotracer method [Lengendre et al., 1996] and N2-fixation rate measurements via 15N2 isotopic gas method described by Montoya et al., 1996. Briefly, water samples were collected before dawn in ~4.3L polycarbonate bottles, a total of 4ml of enriched 15N2 gas was added via syringe. Bottles were then injected with 1 ml of 47mM 13C bicarbonate stock and gently mixed by inversion. Bottles were incubated either on deck in incubators screened to 48% of surface irradiance and plumbed with flow through surface seawater for temperature regulation or on drifting arrays that allowed for incubations to happen at original light levels. All bottles were incubated for ~ 24hr. Time zero bottles were also collected and sacrificed for each station/depth. Following dawn to dawn incubations, each sample was filtered onto a combusted 25mm glass fiber filter, filters were folded in half and placed in combusted aluminum foil and stored at -20°C for later analysis. Post-cruise, all filters were thawed and dried overnight at 60°C. Samples were then balled into Sn boats and plated for analysis. The carbon and nitrogen isotopic composition (13C and 15N, respectively) were analyzed by continuous-flow isotope ratio mass spectrometry by the Biogeochemical Stable Isotope Facility at University of Hawaii (https://www.soest.hawaii.edu/GG/isotope_biogeochem/index_files/Page532.htm).
DOI: 10.25345/c59g5gj00
title: MassIVE MSV000089323 - Cocaine perturbs mitovesicle biology in the brain
title: Cocaine is one of the most abused psychostimulants in the United States. In addition to its established roles in the regulation of dopaminergic circuitries, cocaine has a broader mechanism of action, including global alterations in brain metabolism and mitochondrial homeostasis. Our group recently identified a subpopulation of non-microvesicular, non-exosomal extracellular vesicles of mitochondrial origin, mitovesicles (mtVs), and provided a method to isolate mtVs from brain parenchyma. Given their origin, we hypothesized that mtVs could be affected by mitochondrial abnormalities induced by chronic cocaine exposure. Therefore, we analyzed mtVs from hemibrains of 3-month-old mice that received for two weeks intraperitoneal injections of cocaine or saline as control. MtVs from the brain extracellular space of cocaine-intoxicated mice were enlarged and more numerous when compared to controls. Moreover, cocaine stimulated higher intracellular mitochondrial fission and higher levels of upstream (but not downstream) mitophagy pathways, suggesting increased mitochondrial fragmentation and a block in mitophagy flux. Lastly, cocaine impaired brain mtV cargo loading as revealed by Mass Spec analysis, causing an alteration in mtV ATP production capacity. These data suggest that mtVs are a previously unidentified player in the biology of cocaine addiction and that target therapies to fine tune brain mtV functionality may be beneficial to mitigate chronic cocaine pathology.
DOI: 10.25919/9stw-1h12
title: Parkes observations for project P1150 semester 2022APRS_02

description: To date, the only radio pulsars that have been confirmed outside of our Galaxy lie in the Magellanic Clouds, with the LMC being the richer of the two galaxies in terms of pulsar discoveries. However, no millisecond pulsars (MSPs) have yet been discovered in the LMC or anywhere outside of our Galaxy. Since the majority of MSPs reside in binary systems, the discovery and study of MSPs can help us understand LMC binary pulsar evolution and MSP companion characteristics, as well as the different star formation environment of the LMC. We have discovered a number of weak but promising MSP candidates in a survey of the LMC in a high-resolution multibeam survey. Although these candidates have characteristics that suggest they are real, the detections from the survey data are too weak by themselves to definitively state whether they are real or not. Follow-up confirmations are thus required, and the UWL receiver makes such confirmations feasible. We estimate that with the increased sensitivity of the UWL compared to the multibeam system, we can obtain clear confirmation detections with S/N &gt; 10-12 with one-hour integrations per candidate. We propose to confirm 10 of our MSP candidates from the survey with one-hour observations with the UWL system, which totals 10 hr of time requested (plus overhead time for setup, and slew). If these candidates are confirmed, these would be the first extragalactic radio MSPs ever discovered.
DOI: 10.6084/m9.figshare.16619773.v1
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.25911/s6nn-8k54
title: Example Raman Spectra from Plants
title: Good vibrations: Raman spectroscopy enables insights into plant biochemical composition

description: Non-invasive techniques are needed to enable an integrated understanding of plant metabolic responses to environmental stresses. Raman spectroscopy is one such technique, allowing non-destructive chemical characterization of samples in situ and in vivo and resolving the chemical composition of plant material at scales from microns to meters. Here we include example Raman spectra of plant material as training material for plant physiologists interested in using this method.
DOI: 10.6084/m9.figshare.16619773.v2
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.19633404.v3
title: Code snippet suggestions for exploratory programming - User study

description: This dataset contains participant notebooks, scripts for analysis, study instruments and pilot study results.
DOI: 10.25345/c55q4rq67
title: MassIVE MSV000089324 - unlabeled and labeled experiment results
title: labeled and unlabeled medium to grow human gut bacteria and lipidomics analysis.
DOI: 10.7303/syn29837062
title: repertoire_vdj
DOI: 10.5281/zenodo.6499468
title: Plotting codes for the impacts of ODS and CO2 on Arctic amplification

description: Plotting codes for the impacts of ODS and CO2 on Arctic amplification
DOI: 10.5281/zenodo.6499467
title: Plotting codes for the impacts of ODS and CO2 on Arctic amplification

description: Plotting codes for the impacts of ODS and CO2 on Arctic amplification
DOI: 10.6084/m9.figshare.16619773.v3
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.5281/zenodo.6309825
title: "Solar Polar Flux Redistribution based on Observed Coronal Holes" Data

description: These tarballs contains all the input and output data used to generate all the analysis and figures in the paper "Solar Polar Flux Redistribution based on Observed Coronal Holes" submitted to The Astrophysical Journal. More details about the files included in this archive are included in the ReadMe.
DOI: 10.5281/zenodo.6309824
title: "Solar Polar Flux Redistribution based on Observed Coronal Holes" Data

description: These tarballs contains all the input and output data used to generate all the analysis and figures in the paper "Solar Polar Flux Redistribution based on Observed Coronal Holes" submitted to The Astrophysical Journal. More details about the files included in this archive are included in the ReadMe.
DOI: 10.17632/szky36kbpz.1
title: Data for: Quality online detection in cement clinker: A soft sensor model based on multivariate time series analysis and CNN

description: The raw data is in the cement plant, now.My collection is the papers we have seen.
DOI: 10.17632/yc3nw4d9f2.1
title: Shin et al. _ Onychodactylus koreanus _ Climate change _ Occurrence records

description: These files include both the occurrence records of Onychodactylus koreanus and background points used to generate MaxEnt species distribution models.

Supplementary File Mendeley 1: raw occurrences of the study species (O. koreanus).
Supplementary File Mendeley 2: raw occurrences of the target group (Korean amphibians).
Supplementary File Mendeley 3: cleaned occurrences of the target group.
Supplementary File Mendeley 4: spatially thinned occurrences of the study species.
DOI: 10.17632/f3cdrdwy88.1
title: Data for: Direct Estimation of Discrete Fluid Facies and Fluid Indicators Via a Bayesian Seismic Probabilistic Inversion and a Novel Exact PP-wave Reflection Coefficient

description: PP-wave Reflection Coefficient with Fluid Indicators

and Synthetic_Examples
DOI: 10.17632/h38jyfc3kt.1
title: Economic Hardship and Food Waste

description: Survey data collected in 2 parts (1 week separated) on recent economic hardship and household food waste behavior.
DOI: 10.17632/h6v8j338ds.1
title: Liming and Rhizoctonia root rot of soybean

description: The objective of this study was to verify the effect of liming on the incidence of Rhizoctonia root rot and the limestone dose that provides the highest soybean yield in four fields with different soil classes. The treatments were arranged in a factorial scheme of 4 fields with different soil classes (Paleudult, Cambisol Ta, Cambisol Tb and Nitosol) x 2 sites within each field (inside and outside of the patch) x 4 doses of limestone (0, 3, 6 and 9 Mg ha-1).  The experimental design within each site in the field was in a complete randomized block with four replications. The variables evaluated were: incidence (%) of the disease (INC); area under the disease progress curve (AUDPC), soybean yield (YIELD), height (cm) of plant (PLH), height (cm) of insertion of the first pod (INSH), number of branches per plant (BRA), number of nodes per plant (TNOD), number of fertile nodes per plant (FNOD), number of pods per plant (PODS), and number of grains per plant (GRAINS), 1000-grain weight in grams (WEIGHT), and number of plants per meter (PLANTS).
DOI: 10.17632/yc3nw4d9f2.2
title: Shin et al. _ Onychodactylus koreanus _ Climate change _ Occurrence records

description: These files include both the occurrence records of Onychodactylus koreanus and background points used to generate MaxEnt species distribution models.

Supplementary File Mendeley 1: raw occurrences of the study species (O. koreanus).
Supplementary File Mendeley 2: raw occurrences of the target group (Korean amphibians).
Supplementary File Mendeley 3: cleaned occurrences of the target group.
Supplementary File Mendeley 4: spatially thinned occurrences of the study species.
DOI: 10.17632/yc3nw4d9f2.3
title: Occurrence records for Onychodactylus koreanus on the Korean Peninsula

description: These files include both the occurrence records of Onychodactylus koreanus and background points used to generate MaxEnt species distribution models.

Supplementary File Mendeley 1: raw occurrences of the study species (O. koreanus).
Supplementary File Mendeley 2: raw occurrences of the target group (Korean amphibians).
Supplementary File Mendeley 3: cleaned occurrences of the target group.
Supplementary File Mendeley 4: spatially thinned occurrences of the study species.
DOI: 10.17632/p4btc9z6hy.1
title: The mitochondrial protease Lonp1 maintains oocyte development and survival by suppressing nuclear translocation of AIFM1 in mammals

description: The raw data of SMART RNAseq about MII oocytes from 3-week, 4-week and 5-week control (Lonp1flox/flox) and Lonp1 Gdf9Cre cKO mice and The raw data of SMART RNAseq about oocytes from different stage follicles from Lonp1flox/flox and Lonp1Gdf9Cre cKO mice
DOI: 10.17632/ynjzrw6f5x.1
title: Data for: Extensive pollen-mediated gene flow across intensively managed landscapes in an insect-pollinated shrub native to semiarid habitats 

description: This is the data corresponding to the paper: "Extensive pollen-mediated gene flow across intensively managed landscapes in an insect-pollinated shrub native to semiarid habitats ", published in the journal of  Molecular Ecology in year 2021. For study design and sampling methods, please see the paper or contact with the corresponding author.
DOI: 10.17632/np65bh8tgw.1
title: Appendices for: Feeding strategies of circum-Mediterranean hipparionins during the late Miocene: exploring dietary preferences related to size through Dental Microwear Analysis

description: Appendices 2, 3, and 5 of the referred manuscript available for download. Appendix 2 includes the raw data (dental microwear texture parameters) of all the hipparionin sample analyzed. Photosimulations of all microwear surfaces are shown at Appendix 3. An excel file with metapodial measures and body mass estimations conforms Appenidx 5. The other appendices related to this manuscript are shown at the end of it.
DOI: 10.6084/m9.figshare.16619773.v4
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.15139/s3/uyvmqy
title: A four-case study of immigration in Europe: Reconsideration of logistic regression

description: With immigration to Europe increasing throughout recent years, migration effects on European society and politics have become of significant interest to both citizens and governing officials. To begin understanding these impacts it is necessary to gain insight into the attitudes towards immigration. By doing so, it is possible to not only identify potential economic and political reactionary strategies but also recognise how policies might be received by European citizens. The first step in analysing immigration sentiments is to capture the level of favourability and group characteristics of those who constitute each level.
DOI: 10.6084/m9.figshare.16619773.v5
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.5281/zenodo.6499338
title: Local chromatin context dictates the genetic determinants of the heterochromatin spreading reaction. Analysis Code, Numerical and Primary data.

description: Uploaded under this Zenodo DOI is the following: 1. the Analysis Code used for Flow Cytometry analysis in the paper, GO complex analysis (Figure 3) and Hit visualization (Figure 1, 2 S1, S4 Figs). 2. The primary Flow Cytometry data from both the initial screen (ScreenFlowFCS) and validation experiments (ValidationFlowFCS) are included as .zip files. 3. a .zip folder is uploaded that contains all the analysis code for the ChIP-Seq experiments. 4. Excel worksheets that contain the numerical source data for all qPCR bar plots.
DOI: 10.6084/m9.figshare.16619773.v6
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.5281/zenodo.5122950
title: Local chromatin context dictates the genetic determinants of the heterochromatin spreading reaction. Analysis Code, Numerical and Primary data.

description: Uploaded under this Zenodo DOI is the following: 1. the Analysis Code used for Flow Cytometry analysis in the paper, GO complex analysis (Figure 3) and Hit visualization (Figure 1, 2 S1, S4 Figs). 2. The primary Flow Cytometry data from both the initial screen (ScreenFlowFCS) and validation experiments (ValidationFlowFCS) are included as .zip files. 3. a .zip folder is uploaded that contains all the analysis code for the ChIP-Seq experiments. 4. Excel worksheets that contain the numerical source data for all qPCR bar plots.
DOI: 10.14457/tu.the.2020.1243
title: Needs analysis on English language use among Young Smart Farmers of Thailand

description: The study aimed to investigate the needs regarding English language use among Young Smart Farmers (YSF) of Thailand to find out which English communication skills they need to develop. A total of forty-one participants responded to a questionnaire that asked them to rate their level of agreement with various Likert-scale statements regarding the need to improve the four English language skills. The findings revealed that the majority of Thai YSFs needed to improve their reading skill the most, followed by listening, speaking, and writing skills, respectively. The qualitative data showed that YSFs would like to get various types of support from the government sectors in improving their English language skills for self and business development. The study provides suggestions on what the government and other related sectors can do to assist YSFs in enhancing their English proficiency in order to be more competitive in the global market.