cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hc8037v
title: Image-derived models of cell organization changes during differentiation and drug treatments

description: PC12 cells are a popular model system to study changes driving and
 accompanying neuronal differentiation. While attention has been paid to
 changes in transcriptional regulation and protein signaling, much less is
 known about the changes in organization that accompany PC12
 differentiation. Fluorescence microscopy can provide extensive information
 about these changes, although it is difficult to continuously observe
 changes over many days of differentiation. We describe a generative model
 of differentiation-associated changes in cell and nuclear shape and their
 relationship to mitochondrial distribution constructed from images of
 different cells at discrete time points. We show that the model accurately
 represents complex cell and nuclear shapes and learn a regression model
 that relates cell and nuclear shape to mitochondrial distribution; the
 predictive accuracy of the model increases during differentiation. Most
 importantly, we propose a method, based on cell matching and
 interpolation, to produce realistic simulations of the dynamics of cell
 differentiation from only static images. We also found that the
 distribution of cell shapes is hollow: most shapes are very different from
 the average shape. Finally, we show how the method can be used to model
 nuclear shape changes of human induced pluripotent stem cells resulting
 from drug treatments. [Media: see text] [Media: see text] [Media: see
 text] [Media: see text] [Media: see text] [Media: see text] [Media: see
 text] [Media: see text]
description: PC12_images_exp48APC12_images_exp48BPC12_images_exp96README
DOI: 10.5061/dryad.95j80kv
title: Across-species differences in pitch perception are consistent with differences in cochlear filtering

description: Pitch perception is critical for recognizing speech, music and animal
 vocalizations, but its neurobiological basis remains unsettled, in part
 because of divergent results across species. We investigated whether
 species-specific differences exist in the cues used to perceive pitch and
 whether these can be accounted for by differences in the auditory
 periphery. Ferrets accurately generalized pitch discriminations to
 untrained stimuli whenever temporal envelope cues were robust in the probe
 sounds, but not when resolved harmonics were the main available cue. By
 contrast, human listeners exhibited the opposite pattern of results on an
 analogous task, consistent with previous studies. Simulated cochlear
 responses in the two species suggest that differences in the relative
 salience of the two pitch cues can be attributed to differences in
 cochlear filter bandwidths. The results support the view that
 cross-species variation in pitch perception reflects the constraints of
 estimating a sound’s fundamental frequency given species-specific cochlear
 tuning.
description: Psychophysical
 ScoresThis is a Matlab
 formatted data file generated using Matlab version 2015a. It contains the
 following variables. ferretscores260 – a 3x6 matrix of the percent correct
 scores for 3 ferrets (rows) on trials in which one of 6 stimuli (columns)
 were presented. The ‘260’ in the variable names indicates that the stimuli
 were presented with a reference of 260Hz. ferretscores707 – a 4x6 matrix
 of the percent correct scores for 4 ferrets (rows) on trials in which one
 of 6 stimuli (columns) were presented. The ‘707’ in the variable names
 indicates that the stimuli were presented with a reference of 707Hz.
 humanscores - a 16x6 matrix of the percent correct scores for 16 human
 subjects (rows) on trials in which one of 6 stimuli (columns) were
 presented. stimuli – a cell array of labels describing the 6 stimuli in
 the columns of ferretscores260, ferretscores707, and
 humanscores.PsychophysicalScores.matFerret StimuliWav files of stimuli used for ferret behavioural testingferretStimuli.zipHuman StimuliWav files of stimuli used for human behavioural testinghumanStimuli.zip
DOI: 10.5061/dryad.6974t14
title: Data from: Categorizing and assessing comprehensive drivers of provider behavior for optimizing quality of health care

description: Inadequate quality of care in healthcare facilities is one of the primary
 causes of patient mortality in low- and middle-income countries, and
 understanding the behavior of healthcare providers is key to addressing
 it. Much of the existing research concentrates on improving
 resource-focused issues, such as staffing or training, but these
 interventions do not fully close the gaps in quality of care. By contrast,
 there is a lack of knowledge regarding the full contextual and internal
 drivers–such as social norms, beliefs, and emotions–that influence the
 clinical behaviors of healthcare providers. We aimed to provide two
 conceptual frameworks to identify such drivers, and investigate them in a
 facility setting where inadequate quality of care is pronounced. Using
 immersion interviews and a novel decision-making game incorporating
 concepts from behavioral science, we systematically and qualitatively
 identified an extensive set of contextual and internal behavioral drivers
 in staff nurses working in reproductive, maternal, newborn, and child
 health (RMNCH) in government public health facilities in Uttar Pradesh,
 India. We found that the nurses operate in an environment of stress,
 blame, and lack of control, which appears to influence their perception of
 their role as often significantly different from the RMNCH program’s
 perspective. That context influences their perceptions of risk for
 themselves and for their patients, as well as self-efficacy beliefs, which
 could lead to avoidance of responsibility, or incorrect care. A limitation
 of the study is its use of only qualitative methods, which provide depth,
 rather than prevalence estimates of findings. This exploratory study
 identified previously under-researched contextual and internal drivers
 influencing the care-related behavior of staff nurses in public facilities
 in Uttar Pradesh. We recommend four types of interventions to close the
 gap between actual and target behaviors: structural improvements, systemic
 changes, community-level shifts, and interventions within healthcare
 facilities.
description: Facility decision making scores_aggregate
 Full 17 decision making games scenarios with aggregate responses
 chosen by health facility staff in Uttar Pradesh, India.
 Facility decision making transcripts_anon
 Qualitative transcripts from post-decision making game interviews
 of health facility staff in Uttar Pradesh, India. Immersions_anon Qualitative transcripts from in-facility immersion interviews of health facility staff in Uttar Pradesh, India.
DOI: 10.5061/dryad.cr391cg
title: Data from: Systematics of Hymenophyllum subg. Mecodium (Hymenophyllaceae) in Taiwan

description: —Hymenophyllum subg. Mecodium, composed of the taxonomically notorious H.
 polyanthos and approximately 15 other closely related taxa, are common
 elements of filmy fern communities in the tropical and subtropical moist
 forests. In Taiwan, although only H. polyanthos and one or two closely
 related taxa were recognized in recent studies, considerable morphological
 variation has been observed among populations throughout the island. Thus,
 we conducted an extensive morphological investigation, as well as a
 molecular phylogenetic analysis to clarify the specific diversity and
 phylogenetic relationships within subg. Mecodium in Taiwan. Field and
 herbaria surveys helped in recognizing five morphs in Taiwan, mainly
 differentiated by the combination of certain traits, viz., the presence or
 absence of stipe wings, general frond size and shape, degree of laminar
 crispation, sori position, and involucre shape. The different morphs had
 diverse ecological preferences. The phylogenetic tree, inferred from the
 sequence of plastids rbcL and rps4-trnS, demonstrated that subg. Mecodium
 materials in Taiwan comprise several well-supported lineages, mostly
 corresponding to the classification based on morphology. Comparing with
 the protologues and type specimens of 34 related scientific names, the
 five morphs are herein recognized as five independent species. A new
 species, H. exquisitum, is described here. Also, the status of H.
 paniculiflorum is reconfirmed and that of H. fujisanense, H.
 parallelocarpum, and H. punctisorum reinstated Only H. exquisitum and H.
 parallelocarpum are endemic to Taiwan among all the species studied. In
 addition, the names Hymenophyllum blumeanum, H. integrum, H. microsorum,
 H. polyanthos, H. tenellum, and H. wrightii are now excluded from the
 regional flora, and several related taxa from China, Taiwan, and the
 Philippines treated as synonyms. This study unravels the deep phylogenetic
 relationships within the subg. Mecodium in Taiwan and Eastern Asia.
description: nex file for phylogeny
 reconstructionH0513BML tree fileHym.best.treFig S1Fig S2Fig S3Fig. S4. Lectotype of Hymenophyllum punctisorum (Faurie 302, S). The “A” frond is lectotypified in this study.Fig S4.tif
DOI: 10.25345/c5m61c36b
title: MassIVE MSV000100603 - Proteomic analysis of 6'-sialyllactose-treated THP-1 macrophages infected with Pseudomonas aeruginosa
title: Unbiased proteomics of THP-1 macrophages to understand the effects of 6'-sialyllactose (6'SL) treatment on the immune response to infection with Pseudomonas aeruginosa (PA). THP-1 cells were treated or mock-treated with 6'SL for one hour, followed by infection or mock-infection with Pseudomonas aeruginosa (PA) for 3 and 5 hours.
DOI: 10.5061/dryad.17vp4f3
title: Data from: Diversification rates have no effect on the convergent evolution of foraging strategies in the most speciose genus of bats, Myotis

description: Adaptive radiations are defined as rapid diversification with phenotypic
 innovation led by colonization to new environments. Notably, adaptive
 radiations can occur in parallel when habitats with similar selective
 pressures are accessible promoting convergent adaptions. While convergent
 evolution appears to be a common process, it is unclear what are the main
 drivers leading the reappearance of morphologies or ecological roles. We
 explore this question in Myotis bats, the only Chiropteran genus with a
 worldwide distribution. Three foraging strategies ­–gleaning, trawling,
 and aerial netting– repeatedly evolved in several regions of the world,
 each linked to characteristic morphologies recognized as ecomorphs.
 Phylogenomic, morphometric, and comparative approaches were adopted to
 investigate convergence of such foraging strategies and skull morphology
 as well as factors that explain diversification rates. Genomic and
 morphometric data were analyzed from ~80% extant taxa. Results confirm
 that the ecomorphs evolved multiple times, with trawling evolving more
 often and foliage gleaning most recently. Skull morphology does not
 reflect common ancestry, evolves convergently with foraging strategy.
 While diversification rates have been roughly constant across the genus,
 speciation rates are area-dependent in taxa with temperate distributions.
 Results suggest that in this species-rich group of bats, first, stochastic
 processes have led divergence into multiple lineages. Then, natural
 selection in similar niches has promoted repeated adaptation of phenotypes
 and foraging strategies. Myotis bats are thus a remarkable case of
 ecomorphological convergence and an emerging model system for
 investigating the genomic basis of parallel adaptive radiation.
description: ScriptsScripts used for analyses.scripts.zipMyotis.Biogeography.v.DivalikeJSummary of Biogeographic inference according to BioGeoBEARS.Myotis.Biogeography.v1.2.pptxmorphDataR file (rda) with landmark coordinates, information of taxa, and morphometric analyses.TreesGene trees and species trees. Consensus and time-calibrated phylogenies.trees.zipaln.DNA.seqsDNA sequences of all loci analyzed.dummy_aln.DNA.seqs
DOI: 10.5061/dryad.36g41fd
title: Data from: Mesocarnivore community structure under predator control: unintended patterns in a conservation context

description: Across the Mediterranean, conservation programmes often operate
 concomitantly with hunting interests within game-lands. Carnivore guilds
 lie at the interface between contrasting management goals, being
 simultaneously fundamental components of ecosystems and targets of
 predator control to reduce predation on game species. Here, we evaluate
 the composition and spatial structure of a mesocarnivore community in a
 protected area of Southeast Portugal, with high economic investment in
 conservation and significant hunting activity. Between June and August
 2015, we deployed 77 camera-traps across a ~80 km2 area. We report on
 interspecific disparities in mesocarnivore occupancy and associated
 environmental determinants. Contrasting occupancy states suggest an
 unbalanced community, biased towards the widespread occurrence of the red
 fox Vulpes vulpes ("ψ" ̂ = 0.92±0.04) compared to other species
 (stone marten Martes foina, European badger Meles meles, Egyptian mongoose
 Herpestes ichneumon, common genet Genetta genetta, and Eurasian otter
 Lutra lutra) exhibiting spatially-restricted occupancy patterns
 ("ψ" ̂ / naïve occupancy &lt; 0.35). The feral cat Felis
 silvestris catus was the exception ("ψ" ̂ = 0.48±0.11) and,
 together with the stone marten, exhibited a positive association with
 human settlements. These findings are consistent with theoretical
 predictions on how mesocarnivore communities are shaped by the effects of
 non-selective predator control, paradoxically favouring species with
 higher population growth rates and dispersal abilities, such as the red
 fox. Our results reinforce the need to understand the role of predator
 control as a community structuring agent with potential unintended
 effects, while exposing issues hindering such attempts, namely
 non-selective illegal killing or biased/concealed information on legal
 control measures. 
description: Mesocarnivore_occupancy_GVNPOccupancy matrix based on camera trapping surveys conducted in Guadiana Valley Natural Park. Ecological variables used for modeling mesocarnivore occupancy are also included.
DOI: 10.5281/zenodo.18392878
title: EFFECTIVE RESOURCE MANAGEMENT IN HIGHER EDUCATION INSTITUTIONS THROUGH STRATEGIC MANAGEMENT PRACTICES

description: The contemporary landscape of higher education is characterized by increasing complexity, heightened competition, and the imperative for sustainable institutional growth. In this context, strategic management emerges as a pivotal mechanism for optimizing resource allocation and enhancing institutional efficacy. This paper explores the theoretical and practical dimensions of strategic management applied to resource utilization in higher education institutions, emphasizing the integration of human, financial, technological, and infrastructural resources.
DOI: 10.5281/zenodo.18392877
title: EFFECTIVE RESOURCE MANAGEMENT IN HIGHER EDUCATION INSTITUTIONS THROUGH STRATEGIC MANAGEMENT PRACTICES

description: The contemporary landscape of higher education is characterized by increasing complexity, heightened competition, and the imperative for sustainable institutional growth. In this context, strategic management emerges as a pivotal mechanism for optimizing resource allocation and enhancing institutional efficacy. This paper explores the theoretical and practical dimensions of strategic management applied to resource utilization in higher education institutions, emphasizing the integration of human, financial, technological, and infrastructural resources.
DOI: 10.5061/dryad.1n0jh42
title: Warming waters beget smaller fish: evidence for reduced size and altered morphology in a desert fish following anthropogenic temperature change

description: Poikilothermic organisms are predicted to show reduced body sizes as they
 experience warming environments under a changing global climate. Such a
 shrinking of size is expected under scenarios where rising temperatures
 increase cellular reaction rates and basal metabolic energy demands,
 therein requiring limited energy to be shifted from growth. Here, we
 provide evidence that the ecological changes associated with warming may
 not only lead to shrinking body size, but also trigger shifts in
 morphology. We documented 33.4% and 39.0% declines in body mass and 7.2%
 and 7.6% reductions in length for males and females, respectively, in a
 wild population of Amargosa pupfish, Cyprinodon nevadensis amargosae,
 following an abrupt anthropogenically driven temperature increase. That
 reduction in size was accompanied by the partial or complete loss of
 paired pelvic fins in ~34% of the population, a morphological change
 concomitant with altered body dimensions including head size and body
 depth. These observations confirm that increasing temperatures can reduce
 body size under some ecological scenarios, and highlight how human-induced
 environmental warming may also trigger morphological changes with
 potential relevance for fitness.
description: Cyprinodon nevadensis
 amargosae - body size data - 2008-2014Data from collection of
 Amargosa pupfish (Cyprinodon nevadensis amargosae) from two habitats, the
 Amargosa River and Tecopa Bore, near Tecopa, California, USA. Data are
 from 2008 and 2013-2014, and include body size (mass, length), sex, pelvic
 fin #, and select body morphology measures (for 2013-14 collections
 only).
DOI: 10.5281/zenodo.18392956
title: ROMITAN TUMANI TURIZM SALOHIYATI: ZIYORAT, EKOTURIZM VA BARQAROR RIVOJLANISH STRATEGIYASI

description: Ushbu maqolada Buxoro viloyatining Romitan tumanining mavjud turizm salohiyati har tomonlama tahlil qilingan. Tahlil natijalariga ko‘ra, tuman turizmi asosan ziyorat turizmi va ekoturizm yo‘nalishlarida yuqori rivojlanish potensialiga ega ekanligi asoslanadi. Maqolada Naqshbandiya tariqatining asosiy maskanlari (Xoʻja Ali Romitaniy va Xoʻja Muhammad Boboyi Samosiy) Romitanga ziyoratchilar oqimini ta'minlovchi asosiy omil sifatida ko‘rsatilgan. Shuningdek, "Bukhara Desert Oasis & Spa" kabi zamonaviy ekoturizm klasterining tashkil etilishi hududning choʻl turizmi va rekreatsiya salohiyatini sezilarli darajada oshirgani qayd etilgan. Maqola Romitan tumani turizm resurslarini (tarixiy, diniy va tabiiy) barqaror rivojlantirish uchun infratuzilmani kengaytirish, kadrlar tayyorlash va samarali marketing strategiyalarini joriy etish zarurligini ta'kidlaydi.
DOI: 10.5281/zenodo.18392955
title: ROMITAN TUMANI TURIZM SALOHIYATI: ZIYORAT, EKOTURIZM VA BARQAROR RIVOJLANISH STRATEGIYASI

description: Ushbu maqolada Buxoro viloyatining Romitan tumanining mavjud turizm salohiyati har tomonlama tahlil qilingan. Tahlil natijalariga ko‘ra, tuman turizmi asosan ziyorat turizmi va ekoturizm yo‘nalishlarida yuqori rivojlanish potensialiga ega ekanligi asoslanadi. Maqolada Naqshbandiya tariqatining asosiy maskanlari (Xoʻja Ali Romitaniy va Xoʻja Muhammad Boboyi Samosiy) Romitanga ziyoratchilar oqimini ta'minlovchi asosiy omil sifatida ko‘rsatilgan. Shuningdek, "Bukhara Desert Oasis & Spa" kabi zamonaviy ekoturizm klasterining tashkil etilishi hududning choʻl turizmi va rekreatsiya salohiyatini sezilarli darajada oshirgani qayd etilgan. Maqola Romitan tumani turizm resurslarini (tarixiy, diniy va tabiiy) barqaror rivojlantirish uchun infratuzilmani kengaytirish, kadrlar tayyorlash va samarali marketing strategiyalarini joriy etish zarurligini ta'kidlaydi.
DOI: 10.5061/dryad.j0m3h29
title: Data from: Blood NfL: a biomarker for disease severity and progression in Parkinson’s disease

description: Objective: To examine whether plasma neurofilament light chain (NfL)
 levels were associated with motor and cognitive progression in Parkinson’s
 disease (PD). Methods: This prospective follow-up study enrolled 178
 participants, including 116 with PD, 22 with multiple system atrophy
 (MSA), and 40 healthy controls. We measured plasma NfL levels with
 electrochemiluminescence immunoassay. Patients with PD received
 evaluations of motor and cognition, at baseline and at a mean follow-up
 interval of 3 years. Changes in the unified Parkinson's disease
 rating scale (UPDRS) part III motor score and Mini-Mental State
 Examination (MMSE) score were used to assess motor and cognition
 progression. Results: Plasma fL levels were significantly higher in MSA
 than in PD and healthy groups (35.8±6.2 pg/ml, 17.6±2.8 pg/ml, and
 10.6±2.3 pg/ml, respectively; P&lt;0.001). In the PD group, NfL levels
 were significantly elevated in patients with advanced Hoehn-Yahr (H-Y)
 stage and patients with dementia (PDD) (P&lt;0.001). NfL levels were
 modestly correlated with UPDRS part III scores (r=0.42, 95% CI: 0.46-0.56,
 P&lt;0.001). After a mean follow-up of 3.4±1.2 years, a Cox regression
 analysis adjusted for age, sex, disease duration and baseline motor or
 cognitive status showed that higher baseline NfL levels were associated
 with higher risks for either motor or cognition progression (P=0.029 and
 P=0.015, respectively). Conclusions: Plasma NfL levels correlated with
 disease severity and progression in terms of both motor and cognitive
 functions in PD. Classification of evidence: This study provides Class III
 evidence that plasma NfL levels distinguish PD and MSA, and is a surrogate
 biomarker for PD progression.
description: Supplementry Figure
 1Supplementary Figure 1.
 Correlations between plasma NfL levels and age. Correlations (Spearman
 correlation analysis) between age and plasma NfL levels are shown for (A)
 healthy controls (r = 0.59 [95%CI: 0.35-0.75], P&lt; 0.0001) and (B)
 patients with PD (r =0.25 [95%CI: 0.10-0.38], P =
 0.001).
DOI: 10.5061/dryad.824f24t
title: Data from: Scaling in words on Twitter

description: Scaling properties of language are a useful tool for understanding
 generative processes in texts. We investigate the scaling relations in
 citywise Twitter corpora coming from the Metropolitan and Micropolitan
 Statstical Areas of the United States. We observe a slightly superlinear
 urban scaling with the city population for the total volume of the tweets
 and words created in a city. We then find that a certain core vocabulary
 follows the scaling relationship of that of the bulk text, but most words
 are sensitive to city size, exhibiting a super- or a sublinear urban
 scaling. For both regimes we can offer a plausible explanation based on
 the meaning of the words. We also show that the parameters for Zipf's
 law and Heaps law differ on Twitter from that of other texts, and that the
 exponent of Zipf's law changes with city size.
DOI: 10.5061/dryad.148f85j
title: Data from: Combination of polyethylene glycol impregnation and paraffin heat treatment to protect round bamboo from cracking

description: Round bamboo has drawn more and more attentions in architecture,
 decoration and recreational products. Splitting brings some safety
 problems, which shorten the service life of Round bamboo. In this paper,
 three schemes were adopted as follows to solve the problem: Round bamboo
 was impregnated in PEG-1000 solution alone, heat-treatment in paraffin
 alone, or treated with the combination of PEG impregnation and paraffin
 heat treatment (PEG-PH). The treated bamboo was exposed outdoor for 26
 weeks to evaluate the development of cracks. Results showed as follows:
 The initial split of PEG-PH treated bamboo appeared after 22 weeks, while
 that of the controls after 2weeks, respectively. the total length of
 cracks were 2271.31 mm and 873.5 mm for the control and PEG-PH treated
 bamboo. To reveal the reasons for reduced cracks, scanning electron
 micrograph (SEM) were employed to observe the microstructure of bamboo,
 besides, hydrophobicity of bamboo was characterized by water contact angle
 (WCA). PEG can swell the cell wall and the better hydrophobicity of round
 bamboo could be achieved after PEG-PH treatment. Therefore, the
 combination of PEG immersion and paraffin heating is an effective and
 practicable method in bamboo treatment, especially for round bamboo with
 high moisture content.
description: all the data of heating,
 weather，26-week outdoor exposure and the hydrophobic
 propertyData.xls