cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13350743.v1
title: PS P (Chapter II, Evans Dissertation)

description: This is drone product set P from Chapter II of Alexandra's dissertation.<br>The orthomosaic and DSM show the Bellamy beaver dam area in Dover, NH, USA. The imagery was collected on November 22, 2019 using a DJI Phantom 3 Professional drone. Ground control points were used for georeferencing the imagery during SfM processing, surveyed with a Topcon Hiper Lite+. Automated drone flight paths were used to collect nadir and angled aerial images with sufficient image overlap for SfM processing in Agisoft PhotoScan Professional. The PhotoScan-generated report includes additional details on the SfM processing workflow and on the drone products.<br>Please see Alexandra's dissertation (University of New Hampshire) for more information on the drone products and project.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.13350743
title: PS P (Chapter II, Evans Dissertation)

description: This is drone product set P from Chapter II of Alexandra's dissertation.<br>The orthomosaic and DSM show the Bellamy beaver dam area in Dover, NH, USA. The imagery was collected on November 22, 2019 using a DJI Phantom 3 Professional drone. Ground control points were used for georeferencing the imagery during SfM processing, surveyed with a Topcon Hiper Lite+. Automated drone flight paths were used to collect nadir and angled aerial images with sufficient image overlap for SfM processing in Agisoft PhotoScan Professional. The PhotoScan-generated report includes additional details on the SfM processing workflow and on the drone products.<br>Please see Alexandra's dissertation (University of New Hampshire) for more information on the drone products and project.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.13456382
title: Ruebel et al. Oocyte Maturation Failure

description: Study of transcriptome changes shared between human and monkey oocytes that fail to mature.<br>
DOI: 10.15468/s3mdgg
title: Goniurosaurus gezhi sp. nov., a new gecko species from Guangxi, China (Squamata: Eublepharidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhu, Xiao-Yu, Chen, Guang-Yu, Román-Palacios, Cristian, Li, Zheng, He, Zhu-Qing (2020): Goniurosaurus gezhi sp. nov., a new gecko species from Guangxi, China (Squamata: Eublepharidae). Zootaxa 4852 (2): 211-222, DOI: https://doi.org/10.11646/zootaxa.4852.2.6
DOI: 10.6084/m9.figshare.13351058
title: PS R (Chapter II, Evans Dissertation)

description: This is drone product set R from Chapter II of Alexandra's dissertation.<br>The orthomosaic and DSM show the Bellamy sediment area in Dover, NH, USA. The imagery was collected on July 30, 2019 using a DJI Phantom 3 Professional drone. Ground control points were used for georeferencing the imagery during SfM processing, surveyed with a Topcon Hiper Lite+. Automated drone flight paths were used to collect nadir and angled aerial images with sufficient image overlap for SfM processing in Agisoft PhotoScan Professional. The PhotoScan-generated report includes additional details on the SfM processing workflow and on the drone products.<br>Please see Alexandra's dissertation (University of New Hampshire) for more information on the drone products and project.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.13351058.v1
title: PS R (Chapter II, Evans Dissertation)

description: This is drone product set R from Chapter II of Alexandra's dissertation.<br>The orthomosaic and DSM show the Bellamy sediment area in Dover, NH, USA. The imagery was collected on July 30, 2019 using a DJI Phantom 3 Professional drone. Ground control points were used for georeferencing the imagery during SfM processing, surveyed with a Topcon Hiper Lite+. Automated drone flight paths were used to collect nadir and angled aerial images with sufficient image overlap for SfM processing in Agisoft PhotoScan Professional. The PhotoScan-generated report includes additional details on the SfM processing workflow and on the drone products.<br>Please see Alexandra's dissertation (University of New Hampshire) for more information on the drone products and project.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.12674375
title: Integrative effects of increasing aridity and biotic cover on soil attributes and functioning in coastal dune ecosystems

description: These databases and metadata correspond to a field experiment performed in 2016 in the Atlantic coastline of the Iberian Peninsula. The experimental design followed a standardized sampling protocol. We collected data of vegetation and soil samples. We determined soil properties, potential soil functions, soil microbial abundance and diversity.
DOI: 10.5281/zenodo.4495548
title: Dataset for Testing the Number of Floor Detector Module

description: Dataset for testing the performance of the number of floor detection model posted here.
DOI: 10.5281/zenodo.4495547
title: Dataset for Testing the Number of Floor Detector Module

description: Dataset for testing the performance of the number of floor detection model posted here.
DOI: 10.15468/rjbz9b
title: A new subgenus and species of Eumolpinae (Coleoptera: Chrysomelidae) from Azerbaijan, with faunistic notes on adjacent countries

description: This dataset contains the digitized treatments in Plazi based on the original journal article Romantsov, Pavel V., Moseyko, Alexey G. (2020): A new subgenus and species of Eumolpinae (Coleoptera: Chrysomelidae) from Azerbaijan, with faunistic notes on adjacent countries. Zootaxa 4853 (1): 139-145, DOI: https://doi.org/10.11646/zootaxa.4853.1.10
DOI: 10.15468/bm7ym5
title: A description of the male of Cocoseius elsalvador Denmark and Andrews (Acari: Phytoseiidae: Typhlodrominae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Melo, Elisângela A. dos S. F., Gondim, Manoel G. C. Jr, de Moraes, Gilberto J., Oliveira, Aníbal R. (2019): A description of the male of Cocoseius elsalvador Denmark and Andrews (Acari: Phytoseiidae: Typhlodrominae). Acarologia 59 (1): 129-133, DOI: 10.24349/acarologia/20194317
DOI: 10.5517/ccdc.csd.cc205lh9
title: CCDC 1852420: Experimental Crystal Structure Determination

description: Related Article: Kuan Yin, Linyan Hua, Liye Qu, Quanyou Yao, Yaorong Wang, Dan Yuan, Hongpeng You, Yingming Yao|2021|Dalton Trans.|50|1453|doi:10.1039/D0DT03772A
DOI: 10.5517/ccdc.csd.cc2068h0
title: CCDC 1853071: Experimental Crystal Structure Determination

description: Related Article: Kuan Yin, Linyan Hua, Liye Qu, Quanyou Yao, Yaorong Wang, Dan Yuan, Hongpeng You, Yingming Yao|2021|Dalton Trans.|50|1453|doi:10.1039/D0DT03772A
DOI: 10.5517/ccdc.csd.cc2068k2
title: CCDC 1853073: Experimental Crystal Structure Determination

description: Related Article: Kuan Yin, Linyan Hua, Liye Qu, Quanyou Yao, Yaorong Wang, Dan Yuan, Hongpeng You, Yingming Yao|2021|Dalton Trans.|50|1453|doi:10.1039/D0DT03772A
DOI: 10.5517/ccdc.csd.cc25vpc3
title: CCDC 2021645: Experimental Crystal Structure Determination

description: Related Article: David Reger, Kilian Schöll, Frank Hampel, Harald Maid, Norbert Jux|2021|Chem.-Eur.J.|27|1984|doi:10.1002/chem.202004983
DOI: 10.5441/001/1.52nn82r9/1
title: 3D flights of European free-tailed bats

description: O'Mara MT, Amorim F, Scacco M, McCracken GF, Safi K, Mata V, Tomé R, Swartz S, Wikelski M, Beja P, Rebelo H, Dechmann DKN. 2021. Bats use topography and nocturnal updrafts to fly high and fast. Curr Biol. doi:10.1016/j.cub.2020.12.042
description: During the day, flying animals exploit the environmental energy landscape by seeking out thermal or orographic uplift, or extracting energy from wind gradients. However, most of these energy sources are not thought to be available at night because of the lower thermal potential in the nocturnal atmosphere, as well as the difficulty of locating features that generate uplift. Despite this, several bat species have been observed hundreds to thousands of meters above the ground. Individuals make repeated, energetically costly high-altitude ascents, and others fly at some of the fastest speeds observed for powered vertebrate flight. We hypothesized that bats use orographic uplift to reach high altitudes, and that both this uplift and bat high-altitude ascents would be highly predictable. By superimposing detailed three-dimensional GPS tracking of European free-tailed bats (Tadarida teniotis) on high-resolution regional wind data, we show that bats do indeed use the energy of orographic uplift to climb to over 1,600 m, and also that they reach maximum sustained self-powered airspeeds of 135 km h−1. We show that wind and topography can predict areas of the landscape able to support high-altitude ascents, and that bats use these locations to reach high altitudes while reducing airspeeds. Bats then integrate wind conditions to guide high-altitude ascents, deftly exploiting vertical wind energy in the nocturnal landscape.
DOI: 10.5441/001/1.52nn82r9/2
title: 3D flights of European free-tailed bats-reference-data

description: O'Mara MT, Amorim F, Scacco M, McCracken GF, Safi K, Mata V, Tomé R, Swartz S, Wikelski M, Beja P, Rebelo H, Dechmann DKN. 2021. Bats use topography and nocturnal updrafts to fly high and fast. Curr Biol. doi:10.1016/j.cub.2020.12.042
description: During the day, flying animals exploit the environmental energy landscape by seeking out thermal or orographic uplift, or extracting energy from wind gradients. However, most of these energy sources are not thought to be available at night because of the lower thermal potential in the nocturnal atmosphere, as well as the difficulty of locating features that generate uplift. Despite this, several bat species have been observed hundreds to thousands of meters above the ground. Individuals make repeated, energetically costly high-altitude ascents, and others fly at some of the fastest speeds observed for powered vertebrate flight. We hypothesized that bats use orographic uplift to reach high altitudes, and that both this uplift and bat high-altitude ascents would be highly predictable. By superimposing detailed three-dimensional GPS tracking of European free-tailed bats (Tadarida teniotis) on high-resolution regional wind data, we show that bats do indeed use the energy of orographic uplift to climb to over 1,600 m, and also that they reach maximum sustained self-powered airspeeds of 135 km h−1. We show that wind and topography can predict areas of the landscape able to support high-altitude ascents, and that bats use these locations to reach high altitudes while reducing airspeeds. Bats then integrate wind conditions to guide high-altitude ascents, deftly exploiting vertical wind energy in the nocturnal landscape.
DOI: 10.5441/001/1.52nn82r9/3
title: TadaridaHighFast_annotated

description: O'Mara MT, Amorim F, Scacco M, McCracken GF, Safi K, Mata V, Tomé R, Swartz S, Wikelski M, Beja P, Rebelo H, Dechmann DKN. 2021. Bats use topography and nocturnal updrafts to fly high and fast. Curr Biol. doi:10.1016/j.cub.2020.12.042
description: During the day, flying animals exploit the environmental energy landscape by seeking out thermal or orographic uplift, or extracting energy from wind gradients. However, most of these energy sources are not thought to be available at night because of the lower thermal potential in the nocturnal atmosphere, as well as the difficulty of locating features that generate uplift. Despite this, several bat species have been observed hundreds to thousands of meters above the ground. Individuals make repeated, energetically costly high-altitude ascents, and others fly at some of the fastest speeds observed for powered vertebrate flight. We hypothesized that bats use orographic uplift to reach high altitudes, and that both this uplift and bat high-altitude ascents would be highly predictable. By superimposing detailed three-dimensional GPS tracking of European free-tailed bats (Tadarida teniotis) on high-resolution regional wind data, we show that bats do indeed use the energy of orographic uplift to climb to over 1,600 m, and also that they reach maximum sustained self-powered airspeeds of 135 km h−1. We show that wind and topography can predict areas of the landscape able to support high-altitude ascents, and that bats use these locations to reach high altitudes while reducing airspeeds. Bats then integrate wind conditions to guide high-altitude ascents, deftly exploiting vertical wind energy in the nocturnal landscape.
DOI: 10.5441/001/1.52nn82r9/4
title: AppA_SuppData_2_3D_staticPlot_minusLat_studyArea_allBats

description: O'Mara MT, Amorim F, Scacco M, McCracken GF, Safi K, Mata V, Tomé R, Swartz S, Wikelski M, Beja P, Rebelo H, Dechmann DKN. 2021. Bats use topography and nocturnal updrafts to fly high and fast. Curr Biol. doi:10.1016/j.cub.2020.12.042
description: During the day, flying animals exploit the environmental energy landscape by seeking out thermal or orographic uplift, or extracting energy from wind gradients. However, most of these energy sources are not thought to be available at night because of the lower thermal potential in the nocturnal atmosphere, as well as the difficulty of locating features that generate uplift. Despite this, several bat species have been observed hundreds to thousands of meters above the ground. Individuals make repeated, energetically costly high-altitude ascents, and others fly at some of the fastest speeds observed for powered vertebrate flight. We hypothesized that bats use orographic uplift to reach high altitudes, and that both this uplift and bat high-altitude ascents would be highly predictable. By superimposing detailed three-dimensional GPS tracking of European free-tailed bats (Tadarida teniotis) on high-resolution regional wind data, we show that bats do indeed use the energy of orographic uplift to climb to over 1,600 m, and also that they reach maximum sustained self-powered airspeeds of 135 km h−1. We show that wind and topography can predict areas of the landscape able to support high-altitude ascents, and that bats use these locations to reach high altitudes while reducing airspeeds. Bats then integrate wind conditions to guide high-altitude ascents, deftly exploiting vertical wind energy in the nocturnal landscape.
DOI: 10.5441/001/1.52nn82r9/5
title: AppB_SuppData_3_3D_verticalArrowsPlot_minusLat_zoomBat

description: O'Mara MT, Amorim F, Scacco M, McCracken GF, Safi K, Mata V, Tomé R, Swartz S, Wikelski M, Beja P, Rebelo H, Dechmann DKN. 2021. Bats use topography and nocturnal updrafts to fly high and fast. Curr Biol. doi:10.1016/j.cub.2020.12.042
description: During the day, flying animals exploit the environmental energy landscape by seeking out thermal or orographic uplift, or extracting energy from wind gradients. However, most of these energy sources are not thought to be available at night because of the lower thermal potential in the nocturnal atmosphere, as well as the difficulty of locating features that generate uplift. Despite this, several bat species have been observed hundreds to thousands of meters above the ground. Individuals make repeated, energetically costly high-altitude ascents, and others fly at some of the fastest speeds observed for powered vertebrate flight. We hypothesized that bats use orographic uplift to reach high altitudes, and that both this uplift and bat high-altitude ascents would be highly predictable. By superimposing detailed three-dimensional GPS tracking of European free-tailed bats (Tadarida teniotis) on high-resolution regional wind data, we show that bats do indeed use the energy of orographic uplift to climb to over 1,600 m, and also that they reach maximum sustained self-powered airspeeds of 135 km h−1. We show that wind and topography can predict areas of the landscape able to support high-altitude ascents, and that bats use these locations to reach high altitudes while reducing airspeeds. Bats then integrate wind conditions to guide high-altitude ascents, deftly exploiting vertical wind energy in the nocturnal landscape.
DOI: 10.5281/zenodo.4501988
title: A Dataset of neurophysiological measurements of patients with completely locked-In syndrome

description: The dataset used for the psychophysiological assessment of four patients with amyotrophic lateral sclerosis (ALS) at advanced stages of the diseases with no means of communication, referred to as complete locked-in syndrome (CLIS). These datasets contain electroencephalogram (EEG), electrooculography (EOG) and functional near-infrared spectroscopy (fNIRS) recordings. During a four-day visit, each patient was recorded performing the various passive and active experiments at a sensory, perceptual, and cognitive level. The dataset includes somatosensory evoked potentials (SEPs), auditory evoked potentials (AEPs), resting-state in two conditions while eyes are open and eyes closed, Brain-Computer Interface (BCI) communication attempt, and during sleep.
DOI: 10.5281/zenodo.4501987
title: A Dataset of neurophysiological measurements of patients with completely locked-In syndrome

description: The dataset used for the psychophysiological assessment of four patients with amyotrophic lateral sclerosis (ALS) at advanced stages of the diseases with no means of communication, referred to as complete locked-in syndrome (CLIS). These datasets contain electroencephalogram (EEG), electrooculography (EOG) and functional near-infrared spectroscopy (fNIRS) recordings. During a four-day visit, each patient was recorded performing the various passive and active experiments at a sensory, perceptual, and cognitive level. The dataset includes somatosensory evoked potentials (SEPs), auditory evoked potentials (AEPs), resting-state in two conditions while eyes are open and eyes closed, Brain-Computer Interface (BCI) communication attempt, and during sleep.
DOI: 10.6084/m9.figshare.13714207
title: CMK.fas

description: <b>Background</b>Isoprenoids are the most ancient and essential class of metabolites produced in all organisms, either via mevalonate (MVA)-and/or methylerythritol phosphate (MEP)-pathways. The MEP-pathway is present in all plastid-bearing organisms and most eubacteria. However, no comprehensive study reveals the origination and evolutionary characteristics of MEP-pathway genes in eukaryotes.<b>Results</b>Here, detailed bioinformatics analyses of the MEP-pathway provide an in-depth understanding the evolutionary history of this indispensable biochemical route, and offer a basis for the co-existence of the cytosolic MVA- and plastidial MEP-pathway in plants given the established exchange of the end products between the two isoprenoid-biosynthesis pathways. Here, phylogenetic analyses establish the contributions of both cyanobacteria and Chlamydiae sequences to the plant’s MEP-pathway genes. Moreover, Phylogenetic and inter-species syntenic block analyses demonstrate that six of the seven MEP-pathway genes have predominantly remained as single-copy in land plants in spite of multiple whole-genome duplication events (WGDs). Substitution rate and domain studies display the evolutionary conservation of these genes, reinforced by their high expression levels. Distinct phenotypic variation among plants with reduced expression levels of individual MEP-pathway genes confirm the indispensable function of each nuclear-encoded plastid-targeted MEP-pathway enzyme in plant growth and development.<b>Conclusion</b>Collectively, these findings reveal the polyphyletic origin and restrict conservation of MEP-pathway genes, and reinforce the potential function of the individual enzymes beyond production of the isoprenoids intermediates.
DOI: 10.6084/m9.figshare.13714177
title: HDS.fas

description: <b>Background</b>Isoprenoids are the most ancient and essential class of metabolites produced in all organisms, either via mevalonate (MVA)-and/or methylerythritol phosphate (MEP)-pathways. The MEP-pathway is present in all plastid-bearing organisms and most eubacteria. However, no comprehensive study reveals the origination and evolutionary characteristics of MEP-pathway genes in eukaryotes.<b>Results</b>Here, detailed bioinformatics analyses of the MEP-pathway provide an in-depth understanding the evolutionary history of this indispensable biochemical route, and offer a basis for the co-existence of the cytosolic MVA- and plastidial MEP-pathway in plants given the established exchange of the end products between the two isoprenoid-biosynthesis pathways. Here, phylogenetic analyses establish the contributions of both cyanobacteria and Chlamydiae sequences to the plant’s MEP-pathway genes. Moreover, Phylogenetic and inter-species syntenic block analyses demonstrate that six of the seven MEP-pathway genes have predominantly remained as single-copy in land plants in spite of multiple whole-genome duplication events (WGDs). Substitution rate and domain studies display the evolutionary conservation of these genes, reinforced by their high expression levels. Distinct phenotypic variation among plants with reduced expression levels of individual MEP-pathway genes confirm the indispensable function of each nuclear-encoded plastid-targeted MEP-pathway enzyme in plant growth and development.<b>Conclusion</b>Collectively, these findings reveal the polyphyletic origin and restrict conservation of MEP-pathway genes, and reinforce the potential function of the individual enzymes beyond production of the isoprenoids intermediates.