cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.155795.v1
title: Raw data from sodium current recordings obtained from untagged human and mouse sodium channels (Nav1.5) expressed in HEK293 cells.

description: For each channel type the cells are numbered starting from 1. For the sake of similar conditions (cells from the same passage, recordings on the same day, same solution aliquots), new cells have been recorded for the tag study. There are two sheets per channel type: one with data from the current voltage (I/V) activation, together with the steady-state inactivation (SSI) protocol; and a second one with data obtained with the onset of slow inactivation (OSI) and the recovery from inactivation (RFI) protocol. For some cells, only some of the protocols have been applied (thus non-continuous cell numbering in some OSI/RFI sheets). All measured voltages are given in mV; cell capacitance was measured in pF. Note that the cells transfected with untagged hNav1.5 used for comparison with mNav1.5 are not the same as in the study with different tags. See Figure 2 and 4 for information about the applied protocols.
DOI: 10.6084/m9.figshare.155790
title: Data collection sheets (baseline and follow up)

description: Data collection sheets that repeats the modified questions from the International Consultation on Incontinence Questionnaire (ICI-Q), completed at baseline and follow up
DOI: 10.6084/m9.figshare.156395.v50
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.155792.v1
title: PowerPoint talk on Macroecology

description: This is a talk I gave at the University of Central Oklahoma (UCO) on 14-Nov-2012 as the guest speaker for the college of math and science. The talk has two parts: 1.) a short introduction to macroecology 2.) a description of my research into macroecological patterns using feasible sets (i.e. the set of all possible form a pattern can take). Each slide in the PowerPoint is annoted with detailed comments and explanation.
DOI: 10.6084/m9.figshare.155789
title: Synura colony size responses

description: Time series of mean number of cells per Synura colony for all treatments and replicates
DOI: 10.6084/m9.figshare.155791.v1
title: Data extraction and interview schedule

description: The first file shows the data extraction intrument used to collect data from medical records on the implementation of NICE and CQUIN norms. The second file shows the semi-structured interview schedule used to interview medical professionals about hospital compliance wit hthe 2010 NICE guidance.
DOI: 10.6084/m9.figshare.156395.v51
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.155788
title: Synura trait assays

description: Results of Synura trait assays (common garden experiments) examining phenotypic variation among the five genotypes of Synura used in the experiment
DOI: 10.6084/m9.figshare.155789.v1
title: Synura colony size responses

description: Time series of mean number of cells per Synura colony for all treatments and replicates
DOI: 10.6084/m9.figshare.156395.v52
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.155787
title: Brachionus and Synura temporal variability and time-averaged densities

description: Time-averaged densities and measures of temporal variability for Brachionus and Synura for all treatments and replicates.
DOI: 10.6084/m9.figshare.155788.v1
title: Synura trait assays

description: Results of Synura trait assays (common garden experiments) examining phenotypic variation among the five genotypes of Synura used in the experiment
DOI: 10.6084/m9.figshare.155792.v3
title: Talk on Macroecology, feasible sets, and integer partitioning

description: This is a talk I gave at the University of Central Oklahoma (UCO) on 14-Nov-2012 as the guest speaker for the college of math and science. The talk has two parts: 1.) a short introduction to macroecology 2.) a description of my research into macroecological patterns using feasible sets (i.e. the set of all possible form a pattern can take). Each slide in the PowerPoint is annoted with detailed comments and explanation.
DOI: 10.6084/m9.figshare.155786
title: Brachionus synura timeseries

description: Time series for all Brachionus and Synura response variables for all treatments and replicates.
DOI: 10.6084/m9.figshare.155787.v1
title: Brachionus and Synura temporal variability and time-averaged densities

description: Time-averaged densities and measures of temporal variability for Brachionus and Synura for all treatments and replicates.
DOI: 10.6084/m9.figshare.156395.v53
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.155786.v1
title: Brachionus synura timeseries

description: Time series for all Brachionus and Synura response variables for all treatments and replicates.
DOI: 10.6084/m9.figshare.155792.v4
title: Macroecology, feasible sets, and integer partitioning

description: This is a talk I gave at the University of Central Oklahoma (UCO) on 14-Nov-2012 as the guest speaker for the college of math and science. The talk has two parts: 1.) a short introduction to macroecology 2.) a description of research into macroecological patterns using feasible sets (i.e. the set of all possible form an ecological pattern or distribution of wealth can take). Integer partitioning is used as the method for examining feasible sets and predicting distributions based solely on the total community abundance (or wealth) and the number of species (or number of entities, in general). Each slide in the PowerPoint is annoted with detailed comments and explanation.
DOI: 10.6084/m9.figshare.155782
title: Gaussian Job Archive for C24H48

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155784
title: Gaussian Job Archive for C19H28N9O10P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155780
title: ROS-induced ethylene production in the three Acaryochloris sp. strains MBIC11017, HICR111A and the novel strain CRS.

description: (A) Cleveland dot-plot of ROS production (in nl Ethylene h-1 µg-1 Chl d) measured during exposure of VIS or NIR adapted Acaryochloris cells to either VIS (blue dots, 340-480 µmol photons m-2 s-1, as denoted on the graph) or NIR (red squares, 400 µmol photons m-2 s-1). (C) Action spectrum of ROS-induced ethylene production (nl Ethylene h-1 µg-1 Chl d) in VIS or NIR adapted strains MBIC11017 and HICR111A. Due to lack of sufficient culture material, action spectra were not determined for Acaryochloris strain CRS. Peak emissions of the monochromatic LEDs used for illumination were: red (645nm), amber (595nm), green (535nm), cyan (495nm) and blue (470nm). The irradiance in this experiment was adjusted to 300 µmol photons m-2 s-1.
DOI: 10.6084/m9.figshare.155782.v1
title: Gaussian Job Archive for C24H48

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155748
title: STI Oratorical Piece on Values (winning Piece)

description: Another winning piece!
DOI: 10.6084/m9.figshare.155722
title: Gaussian Job Archive for C8H19ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155735
title: Oratorical Piece (Winner)

description: This piece won during the competetion held in Cagayan de Oro city
DOI: 10.6084/m9.figshare.155780.v1
title: ROS-induced ethylene production in the three Acaryochloris sp. strains MBIC11017, HICR111A and the novel strain CRS.

description: (A) Cleveland dot-plot of ROS production (in nl Ethylene h-1 µg-1 Chl d) measured during exposure of VIS or NIR adapted Acaryochloris cells to either VIS (blue dots, 340-480 µmol photons m-2 s-1, as denoted on the graph) or NIR (red squares, 400 µmol photons m-2 s-1). (C) Action spectrum of ROS-induced ethylene production (nl Ethylene h-1 µg-1 Chl d) in VIS or NIR adapted strains MBIC11017 and HICR111A. Due to lack of sufficient culture material, action spectra were not determined for Acaryochloris strain CRS. Peak emissions of the monochromatic LEDs used for illumination were: red (645nm), amber (595nm), green (535nm), cyan (495nm) and blue (470nm). The irradiance in this experiment was adjusted to 300 µmol photons m-2 s-1.
DOI: 10.6084/m9.figshare.155722.v1
title: Gaussian Job Archive for C8H19ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155729
title: THE USE OF SELECTED SOCIAL NETWORKING SITES AS A TOOL IN TEACHING WRITING

description: This study investigates the possible relationship of the students’ extent of exposure to social networking sites, their extent of use of the social networking services and the extent of use of the writing strategies in weblogging on their writing performance. The study’s sample contained 65 fourth year level students for school year 2010 – 2011 from Philippine Southfield School.
DOI: 10.6084/m9.figshare.155719
title: Flash illusions induced by visual, auditory and audiovisual stimuli

description: Raw data for 10 subjects (on the visually-induced flash illusion conditions) and 8 subjects (on the auditory-induced and audiovisually-induced illusion conditions) for both "fission" and "fusion" conditions. This data accompanies an article by the same name to be published in the open-access Journal of Vision.
DOI: 10.6084/m9.figshare.155729.v1
title: THE USE OF SELECTED SOCIAL NETWORKING SITES AS A TOOL IN TEACHING WRITING

description: This study investigates the possible relationship of the students’ extent of exposure to social networking sites, their extent of use of the social networking services and the extent of use of the writing strategies in weblogging on their writing performance. The study’s sample contained 65 fourth year level students for school year 2010 – 2011 from Philippine Southfield School.
DOI: 10.6084/m9.figshare.155710
title: Behavioral Engineering and Brain Science in Virtual Reality

description: Lecture on trends, models, and technology in the area of brain-computer interfaces and virtual reality, with an emphasis on the theory behind augmented cognition.
DOI: 10.6084/m9.figshare.155708
title: Gaussian Job Archive for C26H26

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155708.v1
title: Gaussian Job Archive for C26H26

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155710.v1
title: Behavioral Engineering and Brain Science in Virtual Reality

description: Lecture on trends, models, and technology in the area of brain-computer interfaces and virtual reality, with an emphasis on the theory behind augmented cognition.
DOI: 10.6084/m9.figshare.155704
title: Connections between users in the AAS221 tweet stream

description: This is <strong>preliminary</strong> data and is subject to change. Please contact me if you have questions. Connections between users who tweeted about the AAS 221 conference (well, those tweets that included 'aas221', 'hackaas', or 'aas' and '221') in January 2013. The file aas221.sif is a directed graph of links from the user who made the tweet (first column) to user they mentioned in the tweet (third column), which includes 'RT @user ...). The second column is the number of times this happened. The file is tab separated and is intended for use in BioFabric. The file aas221.communities.tsv is also tab separated, and lists the community number (starting at 1) for each pair of users mentioned in aas221.sif. This was created using the algorithm of Ahn, Bagrow, and Lehmnan (doi:10.1038/nature09182), and assumes the links are unweighted and undirected.
DOI: 10.6084/m9.figshare.155704.v1
title: Connections between users in the AAS221 tweet stream

description: This is <strong>preliminary</strong> data and is subject to change. Please contact me if you have questions. Connections between users who tweeted about the AAS 221 conference (well, those tweets that included 'aas221', 'hackaas', or 'aas' and '221') in January 2013. The file aas221.sif is a directed graph of links from the user who made the tweet (first column) to user they mentioned in the tweet (third column), which includes 'RT @user ...). The second column is the number of times this happened. The file is tab separated and is intended for use in BioFabric. The file aas221.communities.tsv is also tab separated, and lists the community number (starting at 1) for each pair of users mentioned in aas221.sif. This was created using the algorithm of Ahn, Bagrow, and Lehmnan (doi:10.1038/nature09182), and assumes the links are unweighted and undirected.
DOI: 10.6084/m9.figshare.155705.v1
title: Genomic Signal Processing: one scientist's quest

description: This is a tutorial/demonstration of applying signal processing techniques to whole-genome data in human cell lines. Analyses were done using Matlab. Associated code can be found at: https://github.com/balicea/GSP-tutorial
DOI: 10.6084/m9.figshare.155705.v2
title: Genomic Signal Processing: one scientist

description: This is a tutorial/demonstration of applying signal processing techniques to whole-genome data in human cell lines. Analyses were done using Matlab. Associated code can be found at: https://github.com/balicea/GSP-tutorial
DOI: 10.6084/m9.figshare.155700
title: Free and Open Source Software underpinning the European Forest Data Centre

description: Rodriguez Aseretto, D., Di Leo, M., de Rigo, D., Corti, P., McInerney, D., Camia, A., San Miguel-Ayanz, J., 2013. <strong>Free and Open Source Software underpinning the European Forest Data Centre</strong>. <em>Geophysical Research Abstracts 15</em>, 12101+. ISSN 1607-7962, European Geosciences Union (EGU). This is the authors’ version of the work. The definitive version is published in the Vol. 15 of Geophysical Research Abstracts (ISSN 1607-7962) and presented at the European Geosciences Union (EGU) General Assembly 2013, Vienna, Austria, 07-12 April 2013<br>http://www.egu2013.eu/ <strong><br></strong> <strong><br></strong> <strong>Free and Open Source Software underpinning the European Forest Data Centre</strong> <strong><br></strong> Dario Rodriguez Aseretto ¹, Margherita Di Leo ¹, Daniele de Rigo ¹ ², Paolo Corti ¹ ³, Daniel McInerney ¹, Andrea Camia ¹, Jes ús San-Miguel-Ayanz ¹ ¹ European Commission, Joint Research Centre, Institute for Environment and Sustainability,<br>Via E. Fermi 2749, I-21027 Ispra (VA), Italy ² Politecnico di Milano, Dipartimento di Elettronica e Informazione,<br>Via Ponzio 34/5, I-20133 Milano, Italy ³ United Nations World Food Programme,<br>Via C.G.Viola 68 Parco dei Medici, I-00148 Rome, Italy <strong><br></strong> <strong><br>Excerpt:</strong> Worldwide, governments are growingly focusing on free and open source software (FOSS) as a move toward transparency and the freedom to run, copy, study, change and improve the software. The European Commission (EC) is also supporting the development of FOSS [...]. In addition to the financial savings, FOSS contributes to scientific knowledge freedom in computational science (CS) and is increasingly rewarded in the science-policy interface within the emerging paradigm of open science. Since complex computational science applications may be affected by software uncertainty, FOSS may help to mitigate part of the impact of software errors by CS community- driven open review, correction and evolution of scientific code. The continental scale of EC science-based policy support implies wide networks of scientific collaboration. Thematic information systems also may benefit from this approach within reproducible integrated modelling. This is supported by the EC strategy on FOSS: "for the development of new information systems, where deployment is foreseen by parties outside of the EC infrastructure, [F]OSS will be the preferred choice and in any case used whenever possible". The aim of this contribution is to highlight how a continental scale information system may exploit and integrate FOSS technologies within the transdisciplinary research underpinning such a complex system. A European example is discussed where FOSS innervates both the structure of the information system itself and the inherent transdisciplinary research for modelling the data and information which constitute the system content. [...]
DOI: 10.6084/m9.figshare.155695
title: Gaussian Job Archive for C144H144(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.155695.v1
title: Gaussian Job Archive for C144H144(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.