cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8058212.v1
title: Spatial variability of <sup>2</sup>H and <sup>18</sup>O composition of meteoric freshwater lakes in Scotland

description: Coastal regions, and in particular islands where precipitation from clouds formed out at sea occurs for the first time, are prime candidates for regions where <sup>2</sup>H and <sup>18</sup>O composition of precipitation will deviate significantly from the global mean geographic and physiographic trends of vapour-transport patterns. The results reported here are the outcome of a study that aimed to test this hypothesis by ‘isotopographically’ mapping the characteristic <i>δ</i><sup>2</sup>H and <i>δ</i><sup>18</sup>O signatures of Scottish freshwaters. The resulting isotope abundance landscapes or ‘isoscapes’ will underpin studies aiming to authenticate origin of Scottish produce but may also offer a baseline against which environmental changes could be assessed. Between April 2011 and May 2012 freshwater samples were collected from 127 different freshwater lochs and reservoirs across Scotland, and analysis results were compared to precipitation data provided by the British Geological Survey. Here we present the results of the <sup>2</sup>H and <sup>18</sup>O analyses of these water samples as well as the first detailed Scotland freshwater isoscapes with a grid resolution of about 5 × 5 km (0.05 degrees).
DOI: 10.6084/m9.figshare.8058185
title: Additional file 8: of CD44, TGM2 and EpCAM as novel plasma markers in endometrial cancer diagnosis

description: The dataset supporting the conclusions of this article. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8058185.v1
title: Additional file 8: of CD44, TGM2 and EpCAM as novel plasma markers in endometrial cancer diagnosis

description: The dataset supporting the conclusions of this article. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8058170
title: Additional file 5: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S5. Differentially expressed genes (106 genes) during decidualization under ESC-specific DNA hypomethylation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058170.v1
title: Additional file 5: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S5. Differentially expressed genes (106 genes) during decidualization under ESC-specific DNA hypomethylation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058155
title: Additional file 4: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S4. ESC-hypomethylated genes (average beta-value from − 300 to + 700 bp is
DOI: 10.6084/m9.figshare.8058146
title: Additional file 3: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S3. Primer pairs used in real-time RT-PCR and sodium bisulfite sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058155.v1
title: Additional file 4: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S4. ESC-hypomethylated genes (average beta-value from − 300 to + 700 bp is
DOI: 10.6084/m9.figshare.8058146.v1
title: Additional file 3: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S3. Primer pairs used in real-time RT-PCR and sodium bisulfite sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058134
title: Additional file 2: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S2. Regions with different histone modifications between the non-decidualized and decidualized ESCs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058128
title: Additional file 1: of CD44, TGM2 and EpCAM as novel plasma markers in endometrial cancer diagnosis

description: The dataset: clinicopathological characteristics of the endometrial cancer patients. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058134.v1
title: Additional file 2: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S2. Regions with different histone modifications between the non-decidualized and decidualized ESCs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058122
title: Additional file 1: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S1. Differentially expressed genes between the non-decidualized and decidualized ESCs and the number of the CpG sites around the transcription start sites (â â 1500 to 4000â bp) of the genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8058128.v1
title: Additional file 1: of CD44, TGM2 and EpCAM as novel plasma markers in endometrial cancer diagnosis

description: The dataset: clinicopathological characteristics of the endometrial cancer patients. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8058122.v1
title: Additional file 1: of Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells

description: Table S1. Differentially expressed genes between the non-decidualized and decidualized ESCs and the number of the CpG sites around the transcription start sites (â â 1500 to 4000â bp) of the genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8058056
title: of Technology-aided assessments of sensorimotor function: current use, barriers and future directions in the view of different stakeholders

description: of Technology-aided assessments of sensorimotor function: current use, barriers and future directions in the view of different stakeholders
DOI: 10.6084/m9.figshare.8058056.v2
title: of Technology-aided assessments of sensorimotor function: current use, barriers and future directions in the view of different stakeholders

description: of Technology-aided assessments of sensorimotor function: current use, barriers and future directions in the view of different stakeholders
DOI: 10.6084/m9.figshare.8058056.v1
title: Additional file 2: of Technology-aided assessments of sensorimotor function: current use, barriers and future directions in the view of different stakeholders

description: Questionnaire. (PDF 2623 kb)
DOI: 10.6084/m9.figshare.8057993
title: Additional file 4: of Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

description: LipidMaps, NIST interlab, and this studies lipid values for NIST SRM 1950. An excel table with the lipids identified in the LIPID MAPS, NIST Interlaboratory Study for Lipidomics, and this study for NIST SRM 1950, and the resulting lipid levels. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8057978
title: Additional file 2: of Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

description: Inclusion List for targeted MS/MS. Contains a Thermo formatted inclusion list for targeted MS/MS. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8057981
title: Additional file 3: of Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

description: LipidMatch Normalizer Software. The LMN_Software.zip file contains batch files for lipidomics with MZmine processing and the LipidMatch Normalizer R script. The .zip file also contains files to guide the user in using LipidMatch, which include: A manual and troubleshooting document, and example input and output data (the data used in this paper). For the most up to date version of LipidMatch Normalizer please visit: http://secim.ufl.edu/secim-tools/ . (ZIP 126 kb)
DOI: 10.6084/m9.figshare.8057993.v1
title: Additional file 4: of Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

description: LipidMaps, NIST interlab, and this studies lipid values for NIST SRM 1950. An excel table with the lipids identified in the LIPID MAPS, NIST Interlaboratory Study for Lipidomics, and this study for NIST SRM 1950, and the resulting lipid levels. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8057978.v1
title: Additional file 2: of Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

description: Inclusion List for targeted MS/MS. Contains a Thermo formatted inclusion list for targeted MS/MS. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8057954
title: MOESM1 of Bayesian optimization for seed germination

description: Additional file 1. Radish seeds experiment data. The complete list of 11 explored vectors of parameters and target function values obtained during 12 trials of the second experiment with radish seeds.
DOI: 10.6084/m9.figshare.8057954.v1
title: MOESM1 of Bayesian optimization for seed germination

description: Additional file 1. Radish seeds experiment data. The complete list of 11 explored vectors of parameters and target function values obtained during 12 trials of the second experiment with radish seeds.
DOI: 10.6084/m9.figshare.8057912
title: Additional file 2: of Perceptions of nephrology among medical students and internal medicine residents: a national survey among institutions with nephrology exposure

description: Fellowship Interest Questionnaire Part 1. First data file from survey responses.
DOI: 10.6084/m9.figshare.8057918
title: Additional file 3: of Perceptions of nephrology among medical students and internal medicine residents: a national survey among institutions with nephrology exposure

description: Fellowship Interest Questionnaire Part 2. Second data file from survey responses.
DOI: 10.6084/m9.figshare.8057918.v1
title: Additional file 3: of Perceptions of nephrology among medical students and internal medicine residents: a national survey among institutions with nephrology exposure

description: Fellowship Interest Questionnaire Part 2. Second data file from survey responses.
DOI: 10.6084/m9.figshare.8057876
title: Additional file 2: of Potential path volume (PPV): a geometric estimator for space use in 3D

description: A worked example as R markdown. (RMD 3 kb)
DOI: 10.6084/m9.figshare.8057876.v1
title: Additional file 2: of Potential path volume (PPV): a geometric estimator for space use in 3D

description: A worked example as R markdown. (RMD 3 kb)
DOI: 10.6084/m9.figshare.8057765
title: Additional file 5: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequencing OTUtable. OTU table documenting numbers of different OTUs generated during the 16S rRNA gene sequencing. (TXT 163 kb)
DOI: 10.6084/m9.figshare.8057753
title: Additional file 3: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequencing metadata. Information describing the samples included for bioinformatics analysis of the 16S rRNA gene sequencing data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8057759
title: Additional file 4: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequences. FASTA file containing the DNA sequences generated using 16S rRNA gene sequencing. (FA 243 kb)
DOI: 10.6084/m9.figshare.8057753.v1
title: Additional file 3: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequencing metadata. Information describing the samples included for bioinformatics analysis of the 16S rRNA gene sequencing data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8057765.v1
title: Additional file 5: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequencing OTUtable. OTU table documenting numbers of different OTUs generated during the 16S rRNA gene sequencing. (TXT 163 kb)
DOI: 10.6084/m9.figshare.8057759.v1
title: Additional file 4: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: 16S rRNA gene sequences. FASTA file containing the DNA sequences generated using 16S rRNA gene sequencing. (FA 243 kb)
DOI: 10.6084/m9.figshare.8057744
title: Additional file 1: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: qPCR results. Quantification cycles obtained using qPCR and clinical information for each clinical sample, investigated in this study. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.8057750
title: Additional file 2: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: Tissue samples used for 16S rRNA gene sequencing. Quantification cycles obtained using qPCR and clinical information for each clinical sample investigated using Illumina sequencing of the V4 region of the 16S rRNA gene. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8057750.v1
title: Additional file 2: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: Tissue samples used for 16S rRNA gene sequencing. Quantification cycles obtained using qPCR and clinical information for each clinical sample investigated using Illumina sequencing of the V4 region of the 16S rRNA gene. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8057744.v1
title: Additional file 1: of The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue

description: qPCR results. Quantification cycles obtained using qPCR and clinical information for each clinical sample, investigated in this study. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.8057681
title: Additional file 2: of Papaver nudicaule (Iceland poppy) alleviates lipopolysaccharide-induced inflammation through inactivating NF-κB and STAT3

description: Figure S1. Extracted ion chromatograms of (A) authentic standard of allocryptopine and (B) blank solution and allocryptopine from samples analyzed by LC-QTOF in the ethanol extracts of aerial parts of (C) NW (D) NO (E) NY (F) NS, and (G) NP at a cultivation period of 90 days. Supplementary Methods. The liquid chromatography-mass spectrometry system consisted of a Thermo Scientific Vanquish UHPLC system (Thermo Fisher Scientific, Sunnyvale, CA, USA) with an Acquity UPLC HSS T3 column (2.1 mm × 100 mm, 1.7 μm; Waters) and a Triple TOF 5600+ mass spectrometer system (Triple TOF MS; QTOF, Sciex, Foster City, CA, USA). Data acquisition and processing were carried out using Analyst TF 1.7, PeakVeiw 2.2 and MasterView software (Sciex, Foster City, CA, USA). (ZIP 185 kb)
DOI: 10.6084/m9.figshare.8057681.v1
title: Additional file 2: of Papaver nudicaule (Iceland poppy) alleviates lipopolysaccharide-induced inflammation through inactivating NF-κB and STAT3

description: Figure S1. Extracted ion chromatograms of (A) authentic standard of allocryptopine and (B) blank solution and allocryptopine from samples analyzed by LC-QTOF in the ethanol extracts of aerial parts of (C) NW (D) NO (E) NY (F) NS, and (G) NP at a cultivation period of 90 days. Supplementary Methods. The liquid chromatography-mass spectrometry system consisted of a Thermo Scientific Vanquish UHPLC system (Thermo Fisher Scientific, Sunnyvale, CA, USA) with an Acquity UPLC HSS T3 column (2.1 mm × 100 mm, 1.7 μm; Waters) and a Triple TOF 5600+ mass spectrometer system (Triple TOF MS; QTOF, Sciex, Foster City, CA, USA). Data acquisition and processing were carried out using Analyst TF 1.7, PeakVeiw 2.2 and MasterView software (Sciex, Foster City, CA, USA). (ZIP 185 kb)
DOI: 10.6084/m9.figshare.8057663
title: Additional file 9: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S5. Collection of AS-SNPs reported as liver eQTL in GTEx. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.8057660
title: Additional file 8: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S4. Collection of AS-SNPs associated to GWAS SNPs and reported liver eQTL in GTEx. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8057663.v1
title: Additional file 9: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S5. Collection of AS-SNPs reported as liver eQTL in GTEx. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.8057654
title: Additional file 7: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S3. Collection of AS-SNPs associated to GWAS SNPs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8057651
title: Additional file 6: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S2. Full collection of liver-specific AS-SNPs. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.8057654.v1
title: Additional file 7: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S3. Collection of AS-SNPs associated to GWAS SNPs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8057651.v1
title: Additional file 6: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S2. Full collection of liver-specific AS-SNPs. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.8057660.v1
title: Additional file 8: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S4. Collection of AS-SNPs associated to GWAS SNPs and reported liver eQTL in GTEx. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8057645
title: Additional file 5: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S1. List of liver-related traits selected from the GWAS catalog. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.8057645.v1
title: Additional file 5: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S1. List of liver-related traits selected from the GWAS catalog. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.8057603
title: Additional file 10: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S6. Results of the funMotifs analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8057603.v1
title: Additional file 10: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

description: Table S6. Results of the funMotifs analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8057588
title: MOESM1 of Methods and consequences of including reduction in greenhouse gas emission in beef cattle multiple-trait selection

description: Additional file 1. Production system calculations.
DOI: 10.6084/m9.figshare.8057591
title: MOESM2 of Methods and consequences of including reduction in greenhouse gas emission in beef cattle multiple-trait selection

description: Additional file 2. Further modelling.
DOI: 10.6084/m9.figshare.8057588.v1
title: MOESM1 of Methods and consequences of including reduction in greenhouse gas emission in beef cattle multiple-trait selection

description: Additional file 1. Production system calculations.
DOI: 10.6084/m9.figshare.8057591.v1
title: MOESM2 of Methods and consequences of including reduction in greenhouse gas emission in beef cattle multiple-trait selection

description: Additional file 2. Further modelling.
DOI: 10.6084/m9.figshare.8057564
title: MOESM9 of Retrotransposon expression in response to in vitro inoculation with two fungal pathogens of Scots pine (Pinus sylvestris L.)

description: Additional file 9. a. All-to-all correlation between expression data and observed damages after inoculation with HA. b. Correlation between expression data within pine seedling families after inoculation with HA.
DOI: 10.6084/m9.figshare.8057561
title: Additional file 4: of Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress

description: Overview of all identified over-represented Gene Ontology (GO) terms. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.8057564.v1
title: MOESM9 of Retrotransposon expression in response to in vitro inoculation with two fungal pathogens of Scots pine (Pinus sylvestris L.)

description: Additional file 9. a. All-to-all correlation between expression data and observed damages after inoculation with HA. b. Correlation between expression data within pine seedling families after inoculation with HA.
DOI: 10.6084/m9.figshare.8057552
title: MOESM7 of Retrotransposon expression in response to in vitro inoculation with two fungal pathogens of Scots pine (Pinus sylvestris L.)

description: Additional file 7. a. Matrix of observed traits and mean relative expression level of four RE loci and antimicrobial PsBs (Pinosylvin synthase) gene after inoculation with HA among pine seedlings root and shoot tissues. b. Mean relative expression level of the antimicrobial gene PsBs (Pinosylvin synthase) after inoculation with HA among pine seedlings studied in root (SAK) and shoot (SKU) tissues. c. Expression of nine REs after HA inoculation in seedling families Sm12 and M110 in shoot and root tissues.
DOI: 10.6084/m9.figshare.8057555
title: Additional file 3: of Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress

description: Comprehensive list of the differential expression analysis. (XLSX 3317 kb)
DOI: 10.6084/m9.figshare.8057552.v1
title: MOESM7 of Retrotransposon expression in response to in vitro inoculation with two fungal pathogens of Scots pine (Pinus sylvestris L.)

description: Additional file 7. a. Matrix of observed traits and mean relative expression level of four RE loci and antimicrobial PsBs (Pinosylvin synthase) gene after inoculation with HA among pine seedlings root and shoot tissues. b. Mean relative expression level of the antimicrobial gene PsBs (Pinosylvin synthase) after inoculation with HA among pine seedlings studied in root (SAK) and shoot (SKU) tissues. c. Expression of nine REs after HA inoculation in seedling families Sm12 and M110 in shoot and root tissues.
DOI: 10.6084/m9.figshare.8057561.v1
title: Additional file 4: of Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress

description: Overview of all identified over-represented Gene Ontology (GO) terms. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.8057555.v1
title: Additional file 3: of Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress

description: Comprehensive list of the differential expression analysis. (XLSX 3317 kb)