cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5129824.v1
title: Supplementary Material for: Polarized Airway Epithelial Models for Immunological Co-Culture Studies

description: Epithelial cells line all cavities and surfaces throughout the body and play a substantial role in maintaining tissue homeostasis. Asthma and other atopic diseases are increasing worldwide and allergic disorders are hypothesized to be a consequence of a combination of dysregulation of the epithelial response towards environmental antigens and genetic susceptibility, resulting in inflammation and T cell-derived immune responses. In vivo animal models have long been used to study immune homeostasis of the airways but are limited by species restriction and lack of exposure to a natural environment of both potential allergens and microflora. Limitations of these models prompt a need to develop new human cell-based in vitro models. A variety of co-culture systems for modelling the respiratory epithelium exist and are available to the scientific community. The models have become increasingly sophisticated and specific care needs to be taken with regard to cell types, culture medium and culture models, depending on the aim of the study. Although great strides have been made, there is still a need for further optimization, and optimally also for standardization, in order for in vitro co-culture models to become powerful tools in the discovery of key molecules dictating immunity and/or tolerance, and for understanding the complex interplay that takes place between mucosa, airway epithelium and resident or infiltrating immune cells. This review focuses on current knowledge and the advantages and limitations of the different cell types and culture methods used in co-culture models of the human airways.
DOI: 10.60893/figshare.apl.28323215.v1
title: Supplement Number 1

description: A description of the DFT calculations details, the experimental details, the phonon spectrum, the formation energy of Li-ion insertion structures, the impact of bond parameters on Li-ion migration behavior, and the band structure.
DOI: 10.6084/m9.figshare.26495554.v1
title: Frequency of upper body muscular demands data set.xlsx

description: This research seeks to understand the frequency of upper body movements within ballet and contemporary dance performance.
DOI: 10.17632/b2ggyx3zfk
title: Demirjian's 8 teeth method for Dental age estimation in Nepalese population

description: It is a dataset of the study conducted with objectives of applying Demirjian’s 8 teeth method to estimate age in the Nepalese Population. We had used the Orthopantomographs of Nepalese people of age above five and less than 23 years. The radiographs were compared to the ‘Tooth Development Chart’ and each tooth studied was assigned with any one of the 10 developmental stages using Demirijian’s 8 teeth method and total maturity scores determined from them.
DOI: 10.17632/g7c44smbwm
title: JIE-Asonouma-Niepelt-Ranciere

description: Replication Files
DOI: 10.17632/trvfb3nwt2
title: The PRIOR Datasets for Rapid Geospatial Land Eligibility Analyses in Europe

description: This resource contains the pre-computed land indication datasets (also known as the "Prior" datasets) developed for the preprint "Methodological Framework for Determining the Land Eligibility of Renewable Energy Sources" [1] and evaluated in the publication "Evaluating Land Eligibility Constraints of Renewable Energy Sources in Europe" [2]. Please cite these sources if this data is used in published works. Note that the original sources from which these datasets were processed are also indicated in the README.txt file, which should also be credited. The main aspects of the Prior datasets are: 1. Each Prior dataset is a raster file covering the European domain (see note N1) * Spatial reference system is set as "EPSG:3035" * Spatial resolution is 100 meters * Datatype is "UInt8" 2. Each dataset represents exactly one geospatial criteria * Example: "road_proximity" = The distance of each pixel from the nearest roadway 3. Pixel values represent edge indexes, rather than the explicit values themselves * This was chosen to conserve storage space * Example: For "road_proximity"... "Index Value" "Edge Value" 0 = "within 0 meters" 1 = "within 50 meters" 2 = "within 100 meters" 3 = "within 200 meters" 4. Each prior dataset represents a processed view of the fundamental data source, therefore if any of this data is used in a published work the fundamental source should also be cited View README.txt for more information The following datasets are available with this resource: 1. agriculture_arable_proximity 2. agriculture_heterogeneous_proximity 3. agriculture_pasture_proximity 4. agriculture_permanent_crop_proximity 5. agriculture_proximity 6. airfield_proximity 7. airport_proximity 8. camping_proximity 9. dni_threshold 10. elevation_threshold 11. ghi_threshold 12. industrial_proximity 13. lake_proximity 14. leisure_proximity 15. mining_proximity 16. ocean_proximity 17. power_line_proximity 18. connection_distance 19. protected_biosphere_proximity 20. protected_bird_proximity 21. protected_habitat_proximity 22. protected_landscape_proximity 23. protected_natural_monument_proximity 24. protected_park_proximity 25. protected_reserve_proximity 26. protected_wilderness_proximity 27. railway_proximity 28. river_proximity 29. roads_main_proximity 30. roads_proximity 31. access_distance 32. roads_secondary_proximity 33. sand_proximity 34. settlement_proximity 35. settlement_urban_proximity 36. slope_north_facing_threshold 37. slope_threshold 38. touristic_proximity 39. waterbody_proximity 40. wetland_proximity 41. windspeed_100m_threshold 42. windspeed_50m_threshold 43. woodland_coniferous_proximity 44. woodland_deciduous_proximity 45. woodland_mixed_proximity 46. woodland_proximity
DOI: 10.17632/tzcbrhd2ny
title: Phonocardiogram Signal Dataset Paired with Blood Pressure Measurements

description: This dataset comprises phonocardiogram (PCG) signals, blood pressure measurements, and additional demographic collected from 78 participants under controlled conditions. The data were recorded using medical-grade digital stethoscope and automated blood pressure monitor to ensure precision and consistency.
DOI: 10.6084/m9.figshare.29037089.v1
title: Data

description: Data files for experiments for population synthesis
DOI: 10.17632/dy2smpf277
title: Open dataset of duplicate publications

description: Dataset for "Duplicate publication: Analysis of scientific misconduct in Russian journals" paper. Contains information about near-duplicate publications in Russian scientific library eLIBRARY.RU
DOI: 10.17632/rb4b9x7b67
title: breast cancer ultrasound and pathology 512

description: Original data of 512 cases
DOI: 10.17632/zyz6cznm5h
title: Image-based dataset of artifact surfaces fabricated by additive manufacturing with applications in machine learning

description: A 2D Laser Profiler KEYENCE LJ-V7000 series is equipped above an FDM machine. After each layer deposition, the laser scanner acquires the 3D point cloud of the upper surface. Then the 3D point cloud is pre-processed to achieve the target surface of the part. Then the top surface is segmented from the point cloud and converted to a 2D depth image provided with this article.
DOI: 10.6084/m9.figshare.28463462.v1
title: Interactions Of Factors Affecting The Implementation Of Integrated Project Delivery (IPD) In The New Zealand Construction Industry

description: Integrated Project Delivery (IPD) is a collaborative construction approach that minimizes waste and enhances sustainability. It focuses on improving schedule, quality, cost, health, and safety through mutual respect and trust. Despite extensive literature, a comprehensive analysis of the interactions affecting IPD implementation is lacking. This study addressed this gap by conducting eighteen semi-structured interviews with New Zealand construction professionals, exploring themes such as Legal, Financial, Technological, Cultural/Organisational, Collaboration and Communication, and Governmental/Political factors. Using VENSIM software and various analysis methods, the research identified critical factors impacting IPD implementation. These insights can help researchers and practitioners promote sustainable construction practices in New Zealand.<br>
DOI: 10.6084/m9.figshare.3564036.v1
title: Appendix D. A table showing power analysis of microsatellite data with POWSIM (Ryman, 2011, User’s manual of POWSIM, a computer program for assessing statistical power when testing for genetic homogeneity, Version 4.1).

description: A table showing power analysis of microsatellite data with POWSIM (Ryman, 2011, User’s manual of POWSIM, a computer program for assessing statistical power when testing for genetic homogeneity, Version 4.1).
DOI: 10.6084/m9.figshare.6874658.v2
title: Failure analysis of Pipe 2 abstrak

description: The fact is shown that pitting attack has occurred on installation of the pipe 2 inch. This pipe has a material of SS 316 L. The pit initiation occurs as described at the analysis. The pitting attack occurs starting from the outer surface and penetrated through the thickness of pipe to the inner surface. The material used is already appropriate with the standard of SS 316 L, but the outer surface of the pipe is left without coating protection. It can be concluded that the pipe material SS 316 L which is used without any coating protection only can survive from the pitting attack for 3 years at a sea environment. To make it longer life it should be done some improvement. That is the protection of the pipe or material selection which is superior to resist the pitting attack or it can be done the anodic or cathodic protection along the pipe line. <br>
DOI: 10.17632/6chjn6zdmz
title: CaLES: A GPU-accelerated solver for large-eddy simulation of wall-bounded flows

description: We introduce CaLES, a GPU-accelerated finite-difference solver designed for large-eddy simulations (LES) of incompressible wall-bounded flows in massively parallel environments. Built upon the existing direct numerical simulation (DNS) solver CaNS, CaLES relies on low-storage, third-order Runge-Kutta schemes for temporal discretization, with the option to treat viscous terms via an implicit Crank-Nicolson scheme in one or three directions. A fast direct solver, based on eigenfunction expansions, is used to solve the discretized Poisson/Helmholtz equations. For turbulence modeling, the classical Smagorinsky model with van Driest near-wall damping and the dynamic Smagorinsky model are implemented, along with a logarithmic law wall model. GPU acceleration is achieved through OpenACC directives, following CaNS-2.3.0. Performance assessments were conducted on the Leonardo cluster at CINECA, Italy. Each node is equipped with one Intel Xeon Platinum 8358 CPU (2.60 GHz, 32 cores) and four NVIDIA A100 GPUs (64 GB HBM2e), interconnected via NVLink 3.0 (200 GB/s). The inter-node communication bandwidth is 25 GB/s, supported by a DragonFly+ network architecture with NVIDIA Mellanox InfiniBand HDR. Results indicate that the computational speed on a single GPU is equivalent to approximately 15 CPU nodes, depending on the treatment of viscous terms and the subgrid-scale model, and that the solver efficiently scales across multiple GPUs. The predictive capability of CaLES has been tested using multiple flow cases, including decaying isotropic turbulence, turbulent channel flow, and turbulent duct flow. The high computational efficiency of the solver enables grid convergence studies on extremely fine grids, pinpointing non-monotonic grid convergence for wall-modeled LES.
DOI: 10.17632/23b45jkb29
title: Single cell RNAseq-based proteogenomics identifies glioblastoma-specific transposable elements encoding HLA-presented peptides 

description: We developed a transposable element (TE)-centered proteogenomic pipeline that combines single cell transcriptomics on tumors from glioblastoma (GBM) patients, bulk RNAseq samples from tumor and healthy tissue cohorts, and immunopeptidomics. We thus identified 370 HLA-I-bound peptides encoded by TEs differentially expressed in GBM. Some of the peptides are encoded by repeat sequences from intact open reading frames (ORFs) present in up to several hundred TEs from recent LINE-1, LTR and SVA subfamilies. Other HLA-I-bound peptides are encoded by unique copies of TEs from old subfamilies that are expressed recurrently in GBM tumors and not expressed, or very infrequently and at low levels, in healthy tissues (including brain). These peptide-coding, GBM-specific, highly recurrent TEs represent potential tumor-specific targets for cancer immunotherapies.
DOI: 10.17632/ryx79j8p65
title: 5 Waves Covid-19 in Iran

description: During the five waves of the Covid-19 pandemic from January 2020 to September 2021, Iranians’ concern about the number of elderly cases that were adversely affected by Covid-19 highly increased. The present study aimed to evaluate the mental and the physical health of Iranian older adults across the big waves of the Covid-19 pandemic. In an analytical and longitudinal study, the health of 517 older people with a positive test in Covid 19 disease during 5 waves of coronavirus in south Iran.
DOI: 10.17632/wxnzj4f4cm
title: Dataset for HADS manuscript

description: Rheumatoid arthritis (RA) patients have a greater prevalence of anxiety and depression. Proinflammatory cytokines are elevated in RA. We aim to evaluate the association between systemic inflammation in RA and anxiety and depression.  Serum proinflammatory cytokines were measured, including interleukin (IL)‐6, IL‐17, and Tumour Necrosis Factor-alpha (TNF‐α). Among 31 patients, ten patients showed anxiety symptoms, 19 patients showed depression symptoms, and two displayed mixed symptoms. Serum TNF-α levels were significantly higher in active disease than in the remission group. There was no association and correlation between proinflammatory cytokines to anxiety and depression symptoms in the active disease and remission groups. This finding suggests that other factors besides disease activity and state of systemic inflammation may cause anxiety and depression in RA patients
DOI: 10.6084/m9.figshare.24045366.v1
title: Vpe.cds.fa

description: coding sequences in Verpa penis genome
DOI: 10.6084/m9.figshare.26530987.v1
title: Engineered Microbial Platform Confers Resistance against Heavy Metals via Phosphomelanin Biosynthesis

description: Source data for this Article
DOI: 10.17632/363csnhzmd
title: Brain_Stroke CT-Images

description: The data set has three categories of brain CT images named: train data, label data, and predict/output data.
DOI: 10.17632/ckjz2r3nvc
title: 3 Axis Vibration Dataset of  Bearing of Induction Motor under Different Loading Conditions 

description: The dataset is acquired under the Mechanical continuous varying load conditions and it is different from available datasets. Moreover, it is a 3 axis acceleration dataset which represents vibration of motor under different loading condition for healthy and faulty bearing.
The dataset can be used for  analysis of  time and frequency characteristics of bearings under varying load conditions. 
This dataset can be used to identify the bearing problem in early stage before fault going to developed in bearing   due to rusting , corrosive, roughness and waviness surface for motor condition monitoring or bearing fault diagnosis
DOI: 10.17632/jt4bj5dnt3
title: Data for: Historic contamination alters mercury dynamics in temperate estuaries relative to uncontaminated sites

description: Mercury concentrations and ancillary data from estuaries along the Northeast coast of the United States.
DOI: 10.6084/m9.figshare.18858166.v2
title: hnRNP C modulates MERS-CoV and SARS-CoV-2 replication by governing the expression of a subset of circRNAs and cognitive mRNAs

description: Host circular RNAs (circRNAs) play critical roles in the pathogenesis of viral infections. However, how viruses modulate the biogenesis of host proviral circRNAs to facilitate their replication remains unclear. We have recently shown that Middle East respiratory syndrome coronavirus (MERS-CoV) infection increases co-expression of circRNAs and their cognate messenger RNAs (mRNAs), possibly by hijacking specific host RNA binding proteins (RBPs). In this study, we systemically analysed the interactions between the representative circRNA–mRNA pairs upregulated upon MERS-CoV infection and host RBPs. Our analysis identified heterogeneous nuclear ribonucleoprotein C (hnRNP C) as a key host factor that governed the expression of numerous MERS-CoV-perturbed circRNAs, including hsa_circ_0002846, hsa_circ_0002061, and hsa_circ_0004445. RNA immunoprecipitation assay showed that hnRNP C could bind physically to these circRNAs. Specific knockdown of hnRNP C by small interfering RNA significantly (<i>P</i> &lt; 0.05 to <i>P</i> &lt; 0.0001) suppressed MERS-CoV replication in human lung adenocarcinoma (Calu-3) and human small airway epithelial (HSAEC) cells. Both MERS-CoV and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection increased the total and phosphorylated forms of hnRNP C to activate the downstream CRK-mTOR pathway. Treatment of MERS-CoV- (IC<sub>50</sub>: 0.618 µM) or SARS-CoV-2-infected (IC<sub>50</sub>: 1.233 µM) Calu-3 cells with the mTOR inhibitor OSI-027 resulted in significantly reduced viral loads. Collectively, our study identified hnRNP C as a key regulator of MERS-CoV-perturbed circRNAs and their cognate mRNAs, and the potential of targeting hnRNP C-related signalling pathways as an anticoronaviral strategy.
DOI: 10.6084/m9.figshare.26489635.v1
title: original data.xlsx

description: The dataset of the papre "Micro/nanoplastics pollution poses a potential threat to soil health".
DOI: 10.17632/kkm38by5vj
title: Intermittent topical menthol treatment reduces white adipose tissue and leads to overweight loss in obese rats

description: Obesity, recognized as a metabolic disease and a global epidemic, calls for novel pharmacological interventions. Menthol, an organic compound, has shown promise in increasing energy expenditure and has been proposed as a potential anti-obesity drug. While preclinical studies have demonstrated menthol's preventive effect on body mass gain, none have investigated its efficacy in treating obesity. In this study, we evaluated the therapeutic potential of menthol in obesity treatment. Obesity was induced in rats through a hypercaloric diet. Obese rats were subjected to intermittent topical treatment with 5% menthol, resulting in sustained hyperthermia indicative of increased thermogenesis and energy expenditure. Additionally, menthol led to a reduction in the area of white adipocytes as a result of weight loss in obese rats. Our findings suggest that menthol has the potential to enhance metabolism and may serve as a viable treatment option for obesity. These results highlight the physiological significance of menthol in modulating metabolic processes and its potential role in combating obesity-related metabolic disorders.
DOI: 10.6084/m9.figshare.20301375.v1
title: Fasta file of Sanger Sequences

description: AG groups were determined by Sanger sequencing of the internal transcribed spacer (ITS) region using the ITS1F (CTT GGT CAT TTA GAG G AAG TAA) and ITS4B (CAG GAG ACT TGT ACA CGG TCC AG) primer pair (758 bp) (Gardes and Bruns 1993). Reactions were held at 94°C for 3 min to denature the DNA, with amplification proceeding for 35 cycles at 94 °C for 45 s, 51 °C for 60 s, and 72 °C for 90 s; a final extension of 10 min at 72 °C. Contigs were assembled using CAP3 software (Huang and Madan 1999). Taxonomy was assigned to each OTU via the NCBI BLASTn database (https://blast.ncbi.nlm.nih.gov) with criteria as 0.0 E and nucleotide match of at least 97%. <br> Gardes, M., and T. D. Bruns. 1993. ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology <strong>2</strong>:113-118. <br> Huang, X., and Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Res 9:868-877.
DOI: 10.6084/m9.figshare.5505406.v1
title: Supplementary Material for: Hemodiafiltration Reduces All-Cause and Cardiovascular Mortality in Incident Hemodialysis Patients: A Propensity-Matched Cohort Study

description: <b><i>Background:</i></b> The majority of studies suggesting that online hemodiafiltration reduces the risk of mortality compared to hemodialysis (HD) have been performed in dialysis-prevalent populations. In this report, we conducted an epidemiologic study of mortality in incident dialysis patients, comparing post-dilution online hemodiafiltration and high-flux HD, with propensity score matching (PSM) used to correct indication bias. <b><i>Methods:</i></b> Our study cohort comprised 3,075 incident dialysis patients treated in 64 Spanish Fresenius Medical Care clinics between January 2009 and December 2012. The primary outcome of this study was to investigate the impact of the type of renal replacement on all-cause mortality. An analysis of cardiovascular mortality was defined as the secondary outcome. To achieve these objectives, patients were followed until December 2016. Patients were categorized as high-flux HD patients if they underwent this treatment exclusively. If &gt;90% of their treatment was with online hemodiafiltration, then the patient was grouped to that modality. <b><i>Results:</i></b> After PSM, a total of 1,012 patients were matched. Compared with patients on high-flux HD, those on online hemodiafiltration received a median replacement volume of 23.45 (interquartile range 21.27–25.51) L/session and manifested 24 and 33% reductions in all-cause and cardiovascular mortality (all-cause mortality hazards ratio [HR] 0.76, 95% CI 0.62–0.94 [<i>p</i> = 0.01]; and cardiovascular mortality HR 0.67, 95% CI 0.50–0.90 [<i>p</i> = 0.008]). <b><i>Conclusions:</i></b> This study shows that post-dilution online hemodiafiltration reduces all-cause and cardiovascular mortality compared to high-flux HD in an incident HD population.
DOI: 10.17632/2kykngrt7t
title: Data for: Effective heuristics and metaheuristics to minimize total flowtime for the distributed permutation flowshop problem

description: All the results used in Section 6.2.
DOI: 10.6084/m9.figshare.28890416.v3
title: ECOOP 25' Quantifying Cache Side-Channel Leakage by Refining Set-Based Abstractions Artifact

description: This is the artifact accompanying the paper "Quantifying Cache Side-Channel Leakage by Refining Set-Based Abstractions" to appear at ECOOP 2025.
DOI: 10.17632/xp5s77y7zj
title: Dataset of "Evaluation of leg symmetry in muscle oxygen saturation during submaximal to maximal cycling exercise"

description: Dataset of the manuscript tilted "Evaluation of leg symmetry in muscle oxygen saturation during submaximal to maximal cycling exercise". In this work we determined whether oxygenation profiles in the three active muscles of both legs were symmetrical during cycling at different intensities. Twenty-six trained cyclists and triathletes completed a graded exercise test (GXT) and an 8-minute Functional Threshold Power estimation test (8MTT) on a cycle ergometer over two non-consecutive days. SmO2 was bilaterally assessed using NIRS technology in the vastus lateralis, gastrocnemius medialis, and tibialis anterior.