cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11609172.v1
title: Seismic resistance performance of a utility tunnel in saline soil foundation based on new cementitious composite materials

description: Abstract Because soluble salt in saline soil dissolves with water, utility tunnels built in saline soil foundation are more likely to damage due to by groundwater and earthquake. In this study, new cementitious composite materials were developed by using slag, building gypsum, quicklime, and magnesia. The unconfined compressive strengths of the saline soil solidified by new cementitious composite materials and cement are investigated, and the optimum proportion of the different components of the new cementitious composite materials is determined. We found from microscopic characteristics of the saline soil solidified by the new cementitious composite materials and cement that the new materials could better absorb chloride ions. Finally, the new cementitious composite materials were applied to saline soil foundation reinforcement of a utility tunnel. By using the finite element method (FEM) and shaking table tests, it can be seen that the displacement, acceleration and extent of damage of the utility tunnel after saline soil foundation reinforcement using new cementitious composite materials significantly decreased; therefore, the new cementitious composite materials can improve the seismic behaviour of the utility tunnel and shows potential future engineering application value.
DOI: 10.6084/m9.figshare.11609199
title: Upper urinary tract stone compositions: the role of age and gender

description: ABSTRACT Objective: To analyze the compositions of upper urinary tract stones and investigate their distributions in different gender and age groups. Materials and Methods: Patients diagnosed with upper urinary tract stone disease between December 2014 and March 2018 were retrospectively reviewed. Patient's age, gender, BMI, comorbidities, stone event characteristics, and compositions were collected, and proportions of stone components in different gender and age groups were analyzed. Results: A total of 1532 stone analyses were performed (992 from males and 540 from females). The mean age was younger in males (p &lt;0.001). Males included more cases with larger BMI, hyperuricemia, and obesity, while females had more urinary tract infections. Multiple components were present in 61.8% of stones. Calcium oxalate (CaOx) (67.0%) was the most common component, followed by uric acid (UA) (11.8%), infection stone (11.4%), calcium phosphate (CaP) (8.0%), cystine (1.1%), brushite (0.4%), and 2, 8-dihydroxyadenine (0.2%). Men contributed with more CaOx stones than women at age 30-49 years (all p &lt;0.01) and more UA stones at 30-59 years (all p &lt;0.05). Women contributed with more infection stones than men in age groups 30-49 and 60-69 years (all p &lt;0.05), and more CaP stones at 30-49 years. The prevalence peak was 50-59 years in men and 60-69 years in women. Both genders had the lowest prevalence in adolescence. Prevalence of UA stones increased while that of infection stones decreased with aging in both genders. Conclusions: Age and sex had a strong association with distribution of stone compositions in this Chinese cohort.
DOI: 10.6084/m9.figshare.11609199.v1
title: Upper urinary tract stone compositions: the role of age and gender

description: ABSTRACT Objective: To analyze the compositions of upper urinary tract stones and investigate their distributions in different gender and age groups. Materials and Methods: Patients diagnosed with upper urinary tract stone disease between December 2014 and March 2018 were retrospectively reviewed. Patient's age, gender, BMI, comorbidities, stone event characteristics, and compositions were collected, and proportions of stone components in different gender and age groups were analyzed. Results: A total of 1532 stone analyses were performed (992 from males and 540 from females). The mean age was younger in males (p &lt;0.001). Males included more cases with larger BMI, hyperuricemia, and obesity, while females had more urinary tract infections. Multiple components were present in 61.8% of stones. Calcium oxalate (CaOx) (67.0%) was the most common component, followed by uric acid (UA) (11.8%), infection stone (11.4%), calcium phosphate (CaP) (8.0%), cystine (1.1%), brushite (0.4%), and 2, 8-dihydroxyadenine (0.2%). Men contributed with more CaOx stones than women at age 30-49 years (all p &lt;0.01) and more UA stones at 30-59 years (all p &lt;0.05). Women contributed with more infection stones than men in age groups 30-49 and 60-69 years (all p &lt;0.05), and more CaP stones at 30-49 years. The prevalence peak was 50-59 years in men and 60-69 years in women. Both genders had the lowest prevalence in adolescence. Prevalence of UA stones increased while that of infection stones decreased with aging in both genders. Conclusions: Age and sex had a strong association with distribution of stone compositions in this Chinese cohort.
DOI: 10.6084/m9.figshare.25164059
title: The Necessity of Comparators in Wake-Up Receiver Circuits

description: Wake-up receivers (WuRxs) play a crucial role in enabling wireless sensor nodes to operate efficiently on battery power while ensuring low-latency communication. Typically, comparators are employed to facilitate the conversion from analog to digital signals. However, some recent proposals opt to exclude the comparator to achieve minimal power consumption. This article delves into the investigation of the shoot-through effect present in CMOS devices. Our measurements reveal that connecting analog signals directly to CMOS devices can lead to a significant increase in power consumption, reaching up to a thousandfold. Analyzing our findings in the context of existing research, we project that the shoot-through effect severely limits the battery life of sensor nodes in real-world applications. To address this challenge, we propose the use of nano-power comparators that do not exhibit shoot-through effects. While our proposed comparator circuit adds an additional 175 nA of power consumption, it significantly enhances the reliability of various wake-up receivers.
DOI: 10.6084/m9.figshare.25164059.v1
title: The Necessity of Comparators in Wake-Up Receiver Circuits

description: Wake-up receivers (WuRxs) play a crucial role in enabling wireless sensor nodes to operate efficiently on battery power while ensuring low-latency communication. Typically, comparators are employed to facilitate the conversion from analog to digital signals. However, some recent proposals opt to exclude the comparator to achieve minimal power consumption. This article delves into the investigation of the shoot-through effect present in CMOS devices. Our measurements reveal that connecting analog signals directly to CMOS devices can lead to a significant increase in power consumption, reaching up to a thousandfold. Analyzing our findings in the context of existing research, we project that the shoot-through effect severely limits the battery life of sensor nodes in real-world applications. To address this challenge, we propose the use of nano-power comparators that do not exhibit shoot-through effects. While our proposed comparator circuit adds an additional 175 nA of power consumption, it significantly enhances the reliability of various wake-up receivers.
DOI: 10.6084/m9.figshare.11609307
title: lncRNA OIP5-AS1 targets ROCK1 to promote cell proliferation and inhibit cell apoptosis through a mechanism involving miR-143-3p in cervical cancer

description: Opa-interacting protein 5 antisense transcript 1 (OIP5-AS1) is one kind of cytoplasmic long non-coding RNA (lncRNA), which has been demonstrated to play a critical function in multiple cancers. However, the detailed mechanism of OIP5-AS1 in the regulation of cervical cancer progression is still obscure. Here, we demonstrated that lncRNA OIP5-AS1 was upregulated in cervical cancer and was correlated with poor prognosis by bioinformatics studies. OIP5-AS1 depletion inhibited cell proliferation and promoted cell apoptosis in cervical cancer cells. Furthermore, we clarified that ROCK1 was the downstream effector of OIP5-AS1 and OIP5-AS1 acted as a molecular sponge of miR-143-3p. Finally, we verified that OIP5-AS1 exerted its function in the regulation of cervical cancer progression via interacting with miR-143-3p to regulate ROCK1 expression. Our study revealed novel mechanisms about how lncRNA OIP5-AS1 executed its function in cervical cancer and thus provided potential therapeutic targets for the disease.
DOI: 10.6084/m9.figshare.11609307.v1
title: lncRNA OIP5-AS1 targets ROCK1 to promote cell proliferation and inhibit cell apoptosis through a mechanism involving miR-143-3p in cervical cancer

description: Opa-interacting protein 5 antisense transcript 1 (OIP5-AS1) is one kind of cytoplasmic long non-coding RNA (lncRNA), which has been demonstrated to play a critical function in multiple cancers. However, the detailed mechanism of OIP5-AS1 in the regulation of cervical cancer progression is still obscure. Here, we demonstrated that lncRNA OIP5-AS1 was upregulated in cervical cancer and was correlated with poor prognosis by bioinformatics studies. OIP5-AS1 depletion inhibited cell proliferation and promoted cell apoptosis in cervical cancer cells. Furthermore, we clarified that ROCK1 was the downstream effector of OIP5-AS1 and OIP5-AS1 acted as a molecular sponge of miR-143-3p. Finally, we verified that OIP5-AS1 exerted its function in the regulation of cervical cancer progression via interacting with miR-143-3p to regulate ROCK1 expression. Our study revealed novel mechanisms about how lncRNA OIP5-AS1 executed its function in cervical cancer and thus provided potential therapeutic targets for the disease.
DOI: 10.25386/genetics.19918309
title: Supplemental Material for Wu et al., 2022

description: Supplementary Figures S1-S5, Tables S1-S17, ad Supplementary Methods
DOI: 10.6084/m9.figshare.25164839
title: transmission lines

description: 传输线的图像数据集
DOI: 10.6084/m9.figshare.22617857.v1
title: Additional file 5 of Protective effects of Qing-Re-Huo-Xue formula on bleomycin-induced pulmonary fibrosis through the p53/IGFBP3 pathway

description: Additional file 5: Table S2: Screening results of the differentially expressed proteins.
DOI: 10.6084/m9.figshare.22617001.v1
title: Additional file 2 of Pervasiveness of HLA allele-specific expression loss across tumor types

description: Additional file 2. Additional tables from the results of the association between HLA-I ASE loss and microsatellite instability, nonsense and missense mutations. Table S1. TCGA case numbers broken down by microsatellite instability and HLA-I ASE loss status. Table S2. Association between HLA-I ASE loss and nonsense mutations (a), HLA-I missense mutations (b), contact residue nonsense mutations in HLA-I genes (c) and nonsense/missense B2M mutations (d).
DOI: 10.6084/m9.figshare.22617224
title: Additional file 1 of White-Sutton syndrome and congenital heart disease: case report and literature review

description: Additional file 1.
DOI: 10.6084/m9.figshare.22617206.v1
title: Additional file 1 of GelFAP v2.0: an improved platform for Gene functional analysis in Gastrodia elata

description: Additional file 1: Table S1. Summary of RNA-seq datasets collected in G.elata. Table S2. Key enzymes genes of flavonoid biosynthesis in G.elata. Table S3. Co-expression Relationship between key enzymes genes in flavonoid biosynthesis and transcription factor coding genes. Table S4. Co-expression Relationship between key enzymes genes in flavonoid biosynthesis.
DOI: 10.6084/m9.figshare.5840973
title: UHRF1 epigenetically down-regulates UbcH8 to inhibit apoptosis in cervical cancer cells

description: UHRF1 (ubiquitin-like, containing PHD and RING finger domains 1) is an important epigenetic regulator that plays a part in DNA methylation, protein methylation and ubiquitination. It is also frequently overexpressed in many types of cancers, including cervical cancer, which is caused by human papillomavirus (HPV). In this study, we showed that UHRF1 was up-regulated in HPV oncogene E7 expressing cells and HPV-positive cervical cancer cells. We demonstrated that UHRF1 down-regulated the expression of UBE2L6 gene that encodes the ISG15-conjugating enzyme UbcH8. Overexpression of UHRF1 reduced UBE2L6 while knockdown UHRF1 elevated the expression of UBE2L6. We showed that UHRF1 regulated UBE2L6 gene by promoter hypermethylation in cervical cancer cells. Consistent with the functions of UHRF1, restored expression of UbcH8 induced apoptosis. These findings establish UBE2L6 as a novel target of UHRF1 that regulates the apoptosis function of UHRF1. Our studies suggest that UHRF1/ UbcH8 can be manipulated for therapy in cervical cancer.
DOI: 10.6084/m9.figshare.22617224.v1
title: Additional file 1 of White-Sutton syndrome and congenital heart disease: case report and literature review

description: Additional file 1.
DOI: 10.6084/m9.figshare.24716592
title: DeepVelo processed hindbrain development and mesenchymal/chondrocyte organogenesis data

description: This archived folder contains the datasets needed to reproduce the analysis for DeepVelo, for the hindbrain development and mesenchymal/chondrocyte organogenesis datasets.The processed data is in the <code>h5ad_files</code> subdirectory.The folder must be unarchived using the following command:<code>tar -xzvf deepvelo_data.tar.gz</code>
DOI: 10.6084/m9.figshare.22618013.v1
title: Additional file 15 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 15: Table S9. Coordinates of three classes of zebrafish and mouse cardiac IREs.
DOI: 10.6084/m9.figshare.22617989.v1
title: Additional file 7 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 7: Table S1. Coordinates of IREs and non-IREs in neonatal P1 mouse hearts.
DOI: 10.6084/m9.figshare.22618001
title: Additional file 11 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 11: Table S5. Significantly enriched KEGG pathways for IRE-associated genes that have orthologous genes in both zebrafish and mice.
DOI: 10.6084/m9.figshare.22617992.v1
title: Additional file 8 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 8: Table S2. Locations of IREs identified during zebrafish heart regeneration.
DOI: 10.6084/m9.figshare.22617998.v1
title: Additional file 10 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 10: Table S4. Significantly enriched GO terms for IRE-associated genes that have orthologous genes in both zebrafish and mice.
DOI: 10.6084/m9.figshare.22617995
title: Additional file 9 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 9: Table S3. Results of motif enrichment analysis for zebrafish and mouse IREs.
DOI: 10.6084/m9.figshare.22617992
title: Additional file 8 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 8: Table S2. Locations of IREs identified during zebrafish heart regeneration.
DOI: 10.6084/m9.figshare.22618010
title: Additional file 14 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 14: Table S8. Significantly enriched KEGG pathways for three types of IRE-associated genes in zebrafish and mice.
DOI: 10.6084/m9.figshare.10036565
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.22617995.v1
title: Additional file 9 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 9: Table S3. Results of motif enrichment analysis for zebrafish and mouse IREs.
DOI: 10.6084/m9.figshare.22617998
title: Additional file 10 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 10: Table S4. Significantly enriched GO terms for IRE-associated genes that have orthologous genes in both zebrafish and mice.
DOI: 10.6084/m9.figshare.22618004
title: Additional file 12 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 12: Table S6. Three types of genes associated with IREs in zebrafish and mice.
DOI: 10.6084/m9.figshare.10036565.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.22618007
title: Additional file 13 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 13: Table S7. Significantly enriched GO terms for three types of IRE-associated genes in zebrafish and mice.
DOI: 10.6084/m9.figshare.22618007.v1
title: Additional file 13 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 13: Table S7. Significantly enriched GO terms for three types of IRE-associated genes in zebrafish and mice.
DOI: 10.6084/m9.figshare.22618010.v1
title: Additional file 14 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 14: Table S8. Significantly enriched KEGG pathways for three types of IRE-associated genes in zebrafish and mice.
DOI: 10.6084/m9.figshare.22618016.v1
title: Additional file 16 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 16: Table S10. Public datasets analyzed in this paper.
DOI: 10.5281/zenodo.10628481
title: Data sets from "Assessing the potential for precision medicine in body weight reduction with regard to type 2 diabetes mellitus therapies: a meta-regression analysis of 120 randomized controlled trials"

description: The two data sets (in CSV format) contain the complete infomation to reproduce the analyses from the paper "Assessing the potential for precision medicine in body weight reduction with regard to type 2 diabetes mellitus therapies: a meta-regression analysis of 120 randomized controlled trials" which will be published in "Diabetes, Obesity and Metabolism".

The data set "Data_LogSD.csv" contains the data for the primary analysis of the Log(SD) as given in the main paper, the data set "Data_LogSD_BL_CORR.csv" contains the data for the analysis of the baseline-corrected Log(SD) as given in the supplementary material.
DOI: 10.5281/zenodo.10628482
title: Data sets from "Assessing the potential for precision medicine in body weight reduction with regard to type 2 diabetes mellitus therapies: a meta-regression analysis of 120 randomized controlled trials"

description: The two data sets (in CSV format) contain the complete infomation to reproduce the analyses from the paper "Assessing the potential for precision medicine in body weight reduction with regard to type 2 diabetes mellitus therapies: a meta-regression analysis of 120 randomized controlled trials" which will be published in "Diabetes, Obesity and Metabolism".

The data set "Data_LogSD.csv" contains the data for the primary analysis of the Log(SD) as given in the main paper, the data set "Data_LogSD_BL_CORR.csv" contains the data for the analysis of the baseline-corrected Log(SD) as given in the supplementary material.
DOI: 10.6084/m9.figshare.22618013
title: Additional file 15 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 15: Table S9. Coordinates of three classes of zebrafish and mouse cardiac IREs.
DOI: 10.6084/m9.figshare.10036568
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036568.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036571
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036571.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036574
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.6084/m9.figshare.10036574.v1
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies
DOI: 10.5281/zenodo.10633353
title: DI-IM-DIA-MS/MS tutorial dataset (for MS-DIAL5)

description: This dataset is designed for use with MS-DIAL 5 and its accompanying tutorial. It contains:



A raw data fold (*.d) of lipdomics data using LC-IM-MS/MS.


To reproduce the tutorial results:



Follow the tutorial instructions: Proceed through the tutorial steps to analyze the data.
DOI: 10.5281/zenodo.10633354
title: DI-IM-DIA-MS/MS tutorial dataset (for MS-DIAL5)

description: This dataset is designed for use with MS-DIAL 5 and its accompanying tutorial. It contains:



A raw data fold (*.d) of lipdomics data using LC-IM-MS/MS.


To reproduce the tutorial results:



Follow the tutorial instructions: Proceed through the tutorial steps to analyze the data.
DOI: 10.6084/m9.figshare.10036577
title: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

description: of Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies