cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22021/bbldrdfz201706
title: The Linked Open British National Bibliography – Books. 1950/2017-06 – RDF/XML
DOI: 10.22021/bcldntz201703
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-03 – N-Triples
DOI: 10.22021/bcldrdfz201703
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-03 – RDF/XML
DOI: 10.22021/bsldntz201703
title: The Linked Open British National Bibliography – Serials. 1950/2017-03 – N-Triples
DOI: 10.22021/bsldntz201706
title: The Linked Open British National Bibliography – Serials. 1950/2017-06 – N-Triples
DOI: 10.22021/bsldrdfz201703
title: The Linked Open British National Bibliography – Serials. 1950/2017-03 – RDF/XML
DOI: 10.22021/bsldrdfz201706
title: The Linked Open British National Bibliography – Serials. 1950/2017-06 – RDF/XML
DOI: 10.5281/zenodo.14539
title: Google Trends And Wikipedia Page Views

description: <strong>Abstract</strong> (our paper)

The frequency of a web search keyword generally reflects the degree of public interest in a particular subject matter. Search logs are therefore useful resources for trend analysis. However, access to search logs is typically restricted to search engine providers. In this paper, we investigate whether search frequency can be estimated from a different resource such as Wikipedia page views of open data. We found frequently searched keywords to have remarkably high correlations with Wikipedia page views. This suggests that Wikipedia page views can be an effective tool for determining popular global web search trends.

<strong>Data</strong>

personal-name.txt.gz:<br>
The first column is the Wikipedia article id, the second column is the search keyword, the third column is the Wikipedia article title, and the fourth column is the total of page views from 2008 to 2014.

personal-name_data_google-trends.txt.gz, personal-name_data_wikipedia.txt.gz:<br>
The first column is the period to be collected, the second column is the source (Google or Wikipedia), the third column is the Wikipedia article id, the fourth column is the search keyword, the fifth column is the date, and the sixth column is the value of search trend or page view.

<strong>Publication</strong>

This data set was created for our study. If you make use of this data set, please cite:<br>
Mitsuo Yoshida, Yuki Arase, Takaaki Tsunoda, Mikio Yamamoto. Wikipedia Page View Reflects Web Search Trend. <em>Proceedings of the 2015 ACM Web Science Conference (WebSci '15)</em>. no.65, pp.1-2, 2015.<br>
http://dx.doi.org/10.1145/2786451.2786495<br>
http://arxiv.org/abs/1509.02218 (author-created version)

<strong>Note</strong>

The raw data of Wikipedia page views is available in the following page.<br>
http://dumps.wikimedia.org/other/pagecounts-raw/
description: {"references": ["Mitsuo Yoshida, Yuki Arase, Takaaki Tsunoda, Mikio Yamamoto. Wikipedia Page View Reflects Web Search Trend. Proceedings of the 2015 ACM Web Science Conference (WebSci '15). no.65, pp.1-2, 2015.", "Mitsuo Yoshida, Yuki Arase, Takaaki Tsunoda, Mikio Yamamoto. Wikipedia Page View Analysis for Search Trend Prediction. Proceedings of the Annual Conference of Japanese Society for Artificial Intelligence (in Japanese). vol.29, no.2I1-1, pp.1-4, 2015."]}
DOI: 10.5281/zenodo.16703
title: Powertac 2015-1 Trial 211-240

description: Log and boot files of games 211 - 240
DOI: 10.5281/zenodo.28488
title: Electronic Structures Of Cyclometalated Palladium Complexes In The Higher Oxidation States

description: Raw data for figure 6, cyclic voltammetry
DOI: 10.5281/zenodo.28595
title: Simulation Trajectories For The Article "Molecular Conformation And Bilayer Pores In A Nonionic Surfactant Lamellar Phase Studies With 13C-1H Solid-State Nmr And Molecular Dynamics Simulations"

description: Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r

System: 60 wt% C12E5, T=298K

Other files available: http://dx.doi.org/10.6084/m9.figshare.861071
description: {"references": ["Ferreira et al. Langmuir, 2014, 30 (2), pp 461\u2013469"]}
DOI: 10.5281/zenodo.28637
title: Simulation Trajectories For The Article "Molecular Conformation And Bilayer Pores In A Nonionic Surfactant Lamellar Phase Studies With 13C-1H Solid-State Nmr And Molecular Dynamics Simulations"

description: Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r

System: 60 wt% C12E5, T=320K

Other files available: http://dx.doi.org/10.6084/m9.figshare.861071
description: {"references": ["Ferreira et al. Langmuir, 2014, 30 (2), pp 461\u2013469"]}
DOI: 10.5281/zenodo.28638
title: Simulation Trajectories For The Article "Molecular Conformation And Bilayer Pores In A Nonionic Surfactant Lamellar Phase Studies With 13C-1H Solid-State Nmr And Molecular Dynamics Simulations"

description: Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r

System: 60 wt% C12E5, T=333K

Other files available: http://dx.doi.org/10.6084/m9.figshare.861071
description: {"references": ["Ferreira et al. Langmuir, 2014, 30 (2), pp 461\u2013469"]}
DOI: 10.5281/zenodo.28757
title: Dataset Sti Screening German Hiv-1 Seroconverter Cohort

description: The Stata file contains the raw data of a project in the scope of the German HIV-1 seroconverter cohort, run by the Robert Koch Institute, Berlin, Germany. The data covers anonymous sociodemographic and clinical information of the patients as well as results of a serologocal screening on coinfection with hepatitis B, hepatitis C and syphilis.
DOI: 10.5281/zenodo.45414
title: Klifs: A Knowledge-Based Structural Database To Navigate Kinase–Ligand Interaction Space

description: The Kinase-Ligand Interaction Fingerprints and Structure database (KLIFS) contains a consistent structural alignment and deconstruction of the kinase domains from over 1734 PDB structures covering 190 different human kinases. 

Every crystal structure was structurally aligned in a consistent manner, subsequently broken down from the full complex into separate structural parts: the protein, the orthosteric ligand-binding pocket (85 aligned residues covering the catalytic cleft), orthosteric and allosteric ligand(s), ions, organometallics, cofactors, and waters. By combining the pocket with the orthosteric ligand all interactions are annotated using Interactions FingerPrints (IFPs) for systematic comparison.
description: This dataset is part of a 2013 publication in Journal of Medicinal Chemistry (doi: 10.1021/jm400378w). For the new, web-based, and automatically updated version of KLIFS please go to http://klifs.vu-compmedchem.nl as published in the 2016 database issue of Nucleic Acids Research (doi: 10.1093/nar/gkv1082).
DOI: 10.5281/zenodo.45433
title: Supporting Data From Ecological Opportunities And Constraints In The Evolution Of Diatoms

description: 2016-02-01<br>
Teofil Nakov

Data and code for Nakov, Ruck, Alverson: Ecological opportunities and constraints in the evolution of diatom

This packet contains the following files:

1. Sequence alignment for 540 diatoms and 2 Bolidomonas: Nakov-etal-542-taxon-alignment-clean.fasta<br>
2. The constraint topology used in tree searches: Nakov-etal-constraint-small-clades.phylip<br>
3. Alignment partition file: Nakov-etal-tiger-partitions-rax<br>
4. Character data for 540 diatoms and 2 Bolidomonas: Nakov-etal-542-taxon-discrete-characters.csv<br>
5. The best tree from 420 RAxML optimizations: Nakov-etal-RAxML_bestTree.opt_89<br>
6. 99 additional trees used in the analyses: Nakov-etal-99-randomly-sampled-unique-trees.newick<br>
7. All 100 trees converted into chronograms: Nakov-etal-100-chronograms-smooth-1000.newick<br>
8. Script with random seeds for RAxML optimizations: Nakov-etal-RAxML-calls-for-420-optimizations<br>
9. R scripts with random seeds: Nakov-etal-R-scripts.zip (three scripts: equal-rates, independent, and coordinated + paint regimes models)<br>
10. TreePL control file: Nakov-etal-TreePL-control-file.txt
DOI: 10.5281/zenodo.45520
title: Electron Spin Resonance Of Amorphous Sige Samples

description: Sample ESR Dataset
DOI: 10.5281/zenodo.45560
title: Unravelling Potential Virulence Factor Candidates In Xanthomonas Citri. Subsp. Citri By Secretome Analysis

description: Citrus canker is a major disease affecting citrus production in Brazil. Its mainly caused by <em>Xanthomonas citri </em>subsp. <em>citri</em> strain 306 pathotype A (Xac). We analysed the differential expression of proteins secreted by wild type Xac and an asymptomatic mutant for <em>hrpB4</em> (<em>ΔhrpB4</em>) grown in Nutrient Broth (NB) and a medium mimicking growth conditions in the plant (XAM1). This allowed the identification of 55 secreted proteins, of which 37 were secreted by both strains when cultured in XAM1. In this secreted protein repertoire, the following stand out: Virk, Polyphosphate-selective porin, Cellulase, Endoglucanase, Histone-like protein, Ribosomal proteins, five hypothetical proteins expressed only in the wild type strain, Lytic murein transglycosylase, Lipoprotein, Leucyl-tRNA synthetase, Co-chaperonin, Toluene tolerance, C-type cytochrome biogenesis membrane protein, Aminopeptidase and two hypothetical proteins expressed only in the <em>ΔhrpB4 </em>mutant. Furthermore, Peptidoglycan-associated outer membrane protein, Regulator of pathogenicity factor, Outer membrane proteins, Endopolygalacturonase, Chorismate mutase, Peptidyl-prolyl cis-trans isomerase and seven hypothetical proteins were detected in both strains, suggesting that there was no relationship with the secretion mediated by the type III secretory system, which is not functional in the mutant strain. Also worth mentioning is the Elongation factor Tu (EF-Tu), expressed only the wild type strain, and Type IV pilus assembly protein, Flagellin (FliC) and Flagellar hook-associated protein, identified in the wild-type strain secretome when grown only in NB. Noteworthy, that FliC, EF-Tu are classically characterized as PAMPs (Pathogen-associated molecular patterns), responsible for a PAMP-triggered immunity response. Therefore, our results highlight proteins potentially involved with the virulence. Overall, we conclude that the use of secretome data is a valuable approach that may bring more knowledge of the biology of this important plant pathogen, which ultimately can lead to the establishment of new strategies to combat citrus canker.
description: Accepted for publication on PeerJ.
DOI: 10.5281/zenodo.45596
title: Posterior Pdf Samples For Flicker Model Parameters

description: h5py files containing posterior PDF samples of the flicker-logg-rho_star relations described in the associated paper (submitted).
DOI: 10.5281/zenodo.56233
title: Interaction Data For The Axelrod Python Project

description: This contains interaction data for the Axelrod Python project tournaments. Results are available here: http://axelrod-tournament.readthedocs.org/
DOI: 10.5281/zenodo.56353
title: Determination Of Ti-6242 Α And Β Slip Properties Using Micro-Pillar Test And Computational Crystal Plasticity

description: Data for "Determination of ti-6242 α and β slip properties using micro-pillar test and computational crystal plasticity"<br>
http://dx.doi.org/10.1016/j.jmps.2016.06.007

<br>
Zhen Zhang, Tea-Sung Jun, T. Benjamin Britton and Fionn P.E. Dunne<br>
Department of Materials, Imperial College London, Prince consort Road, London, SW7 2AZ, UK

--

This experimental data folder contains 3 subfolders:<br>
(1) Micropillar compression videos<br>
(2) Simulation data

(3) Data for Figure 4<br>
(4) Data for Figure 6

--

The simulation data in (2) is ABAQUS input deck containing an example finite element representation of an alpha-beta titanium micropillar subjected to compression loading. This model was calibrated against the experimental data using the first 60s of the stress relaxation period.

--

If readers need further information, please feel free to contact: zhen.zhang@imperial.ac.uk
DOI: 10.5281/zenodo.56361
title: Data_Plosone_Too Many Is Too Bad: Long-Term Net Negative Effects Of High Density Ungulate Populations On A Dominant Mediterranean Shrub

description: Dataset for Plos One Publication (2016): Too many is too bad: Long-term net negative effects of high density ungulate populations on a dominant Mediterranean shrub
DOI: 10.5281/zenodo.56368
title: Peri-Transplant Rt For Patients Undergoing Autologous Sct For Hodgkin Lymphoma With Beam Or Bcv

description: This is a multi-institutional database of patients who underwent autologous stem cell transplantation for Hodgkin lymphoma with BEAM or BCV.
DOI: 10.5281/zenodo.56370
title: Dr

description: <strong>Urine arylsulfatase A activity in brain-dead graft donors is a predictor of early and late graft function.</strong>
DOI: 10.22021/bcldntz201706
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-06 – N-Triples
DOI: 10.22021/bcldrdfz201706
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-06 – RDF/XML
DOI: 10.5281/zenodo.16700
title: Follow-Up: Prospective Compound Design Using The ‘Sar Matrix’ Method And Matrix-Derived Conditional Probabilities Of Activity

description: Details of the conditional probability calculations on exemplary the matrix provided in Figure 3 of the publication (see Gupta-Ostermann, Hirose, Odagami & Bajorath, Follow-up: Prospective compound design using the ‘SAR Matrix’ method and matrix-derived conditional probabilities of activity, F1000Research 2015, 4:75 , DOI: 10.12688/f1000research.6271.1 ) is provided in an excel sheet. 

Informative SARMs from the PRISM library are included. Due to proprietary issues the structural information of compounds is not included. Key and value fragments of SARMs are provided with an identifier.
DOI: 10.5281/zenodo.16702
title: C3-Euro4M-Medare Mediterranean Historical Climate Data - V.2

description: Historical surface climate data files and meta-data for stations in Mediterranean North Africa and Middle East areas (1852-2008).
description: This is the version 2 of the C3-EURO4M-MEDARE Mediterranean historical climate data (DOI: 10.5281/zenodo.7531). The data files are in ASCII format. This dataset is cited in Brunet, M., Gilabert, A., Jones, P. and  Efthymiadis, D. (2014),  A historical climate dataset from surface station observations in Mediterranean North Africa and Middle East areas. Geoscience Data Journal. DOI: 10.1002/gdj3 .12
DOI: 10.5281/zenodo.16704
title: Powertac 2015-1 Trial 241-270

description: Log and boot files of games 241 - 270
DOI: 10.5281/zenodo.16705
title: Powertac 2015-1 Trial 271-300

description: Log and boot files of games 271 - 300
DOI: 10.5281/zenodo.29217
title: Myexperiment Workflow Types

description: A JSON document containing the list of workflow types available on http://myexperiment.org, and the number of workflows available of each type.
DOI: 10.5281/zenodo.29239
title: Results Of Preliminary Screening Tests For All Dyslexic And Control Participants (Aci Experiment)

description: Participants' gender, ages, handedness. Results of Raven's test, Reading test, Memory span test, ANT test, and audiogram
DOI: 10.5281/zenodo.29257
title: Roarmap Open Access Policy Data

description: This data is a dump from ROARMAP [http://roarmap.eprints.org/] taken on 24th August 2015.

ROARMAP  is the Registry of Open Access Repository Mandates and Policies, a searchable international registry charting the growth of open access mandates and policies adopted by universities, research institutions and research funders that require or request their researchers to provide open access to their peer-reviewed research article output by depositing it in an open access repository.

A number of fields have been added including country names, repository urls, continent etc.

The data is being used for a series of data visualisations [http://pasteur4oa-dataviz.okfn.org/] for the PATEUR4OA Project [http://pasteur4oa.eu/].

 

PASTEUR4OA (Open Access Policy Alignment Strategies for European Union Research) aims to support the European Commission’s Recommendation to Member States of July 2012 that they develop and implement policies to ensure Open Access to all outputs from publicly-funded research.  

PASTEUR4OA will help develop and/or reinforce open access strategies and policies at the national level and facilitate their coordination among all Member States. It will build a network of centres of expertise in Member States that will develop a coordinated and collaborative programme of activities in support of policymaking at the national level under the direction of project partners.
DOI: 10.5281/zenodo.29417
title: Roarmap Open Access Policy Data - Country List

description: This data is a sub set of a dump from ROARMAP [http://roarmap.eprints.org/] taken on 24th August 2014.

ROARMAP  is the Registry of Open Access Repository Mandates and Policies, a searchable international registry charting the growth of open access mandates and policies adopted by universities, research institutions and research funders that require or request their researchers to provide open access to their peer-reviewed research article output by depositing it in an open access repository.

Number of Open Access policies and a ranking is shown for each country.

The data is being used for a series of data visualisations [http://pasteur4oa-dataviz.okfn.org/] for the PATEUR4OA Project [http://pasteur4oa.eu/].

 

PASTEUR4OA (Open Access Policy Alignment Strategies for European Union Research) aims to support the European Commission’s Recommendation to Member States of July 2012 that they develop and implement policies to ensure Open Access to all outputs from publicly-funded research.  

PASTEUR4OA will help develop and/or reinforce open access strategies and policies at the national level and facilitate their coordination among all Member States. It will build a network of centres of expertise in Member States that will develop a coordinated and collaborative programme of activities in support of policymaking at the national level under the direction of project partners.
DOI: 10.5281/zenodo.29423
title: Ctcf Loop Analysis And Prediction Scripts And Datasets

description: Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al.

ctcfloopscripts_v1.0.zip: Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data. Zipped file.

ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file.

fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.
DOI: 10.5281/zenodo.45570
title: Raw Onboard Logs For "Evolution Of Collective Behaviors For A Real Swarm Of Aquatic Surface Robots"

description: This raw data archive includes the onboard logs from the swarm of aquatic robots used to produce the paper Evolution of Collective Behaviors for a Real Swarm of Aquatic Surface Robots by M. Duarte et al. (2016).

See readme.txt for more details.
DOI: 10.5281/zenodo.45768
title: Myc, Hcfc1 Pla Validation Images From Chromnet Paper

description: The original images from the proximity ligation assay validation of the MYC-HCFC1 interaction suggested by ChromNet (http://chromnet.cs.washington.edu).
DOI: 10.5281/zenodo.45772
title: Daten Zu "Einfluss Von Informationskompetenz-Veranstaltungen Auf Die Qualität Von Masterarbeiten"

description: Rohdaten zur Publikation "Einfluss von Informationskompetenz-Veranstaltungen auf die Qualität von Masterarbeiten".
DOI: 10.5281/zenodo.45774
title: Pdestrian: A Phosphodiesterase Structure And Ligand Interaction Annotated Database As A Tool For Structure-Based Drug Design

description: A systematic analysis is presented of the 220 phosphodiesterase (PDE) catalytic domain crystal structures present in the Protein Data Bank (PDB) with a focus on PDE-ligand interactions. The consistent structural alignment of 57 PDE ligand binding site residues enables the systematic analysis of PDE-ligand Interaction FingerPrints (IFPs), the identification of subtype-specific PDE-ligand interaction features, and the classification of ligands according to their binding modes. We illustrate how systematic mining of this phosphodiesterase structure and ligand interaction annotated (PDEStrIAn) database provides new insights into how conserved and selective PDE interaction hot spots can accommodate the large diversity of chemical scaffolds in PDE ligands. A substructure analysis of the co-crystalized PDE ligands in combination with those in the ChEMBL database provides a toolbox for scaffold hopping and ligand design. These analyses lead to an improved understanding of the structural requirements of PDE binding that will be useful in future drug discovery studies.
description: The newest version of PDEStrIAn is available at http://pdestrian.vu-compmedchem.nl
DOI: 10.5281/zenodo.45807
title: Systematic Design Of Analogs Of Active Compounds Covering More Than 1000 Targets

description: The analog database consisting of 1,297,204 virtual compounds is provided. Virtual compounds are reported in SMILES representation. In addition, for each virtual compound all available ChEMBL analogs (CHEMBL_COMPOUND_ID) and their activities (CHEMBL_TARGET_IDs) are given.
DOI: 10.5281/zenodo.472493
title: Data And Scripts For Looking Into Pandora'S Box: The Content Of Sci-Hub And Its Usage

description: The data and scripts used in <em>Looking into Pandora's Box: The Content of Sci-Hub and its Usage.</em> See README.md for details.