cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/25943899.v1
title: Code and limited data for: Rotational complexity increases cropping system output under poorer growing conditions

description: <br>This work was conducted by the Diverse Rotations Improve Valuable Ecosystem Services (DRIVES) project, based in the USDA-ARS Sustainable Agricultural Systems Lab in Beltsville, MD. The DRIVES team compiled a database of 20-plus long-term cropping systems experiments in North America in order to conduct cross-site research. This repository contains all scripts from our first research paper from the DRIVES database: "Rotational complexity increases cropping system output under poorer growing conditions," published in One Earth (in press). This analysis uses crop yield and experimental design data from the DRIVES database and public data sources for crop prices and inflation. This repository includes limited datasets derived from public sources or lacking connection to site IDs. We do not have permission to share the full primary dataset, but can provide data upon request with permission from site contacts.The scripts show all data setup, analysis, and visualization steps used to investigate how crop rotation diversity (defined by rotation length and the number of species) impacts productivity of whole rotations and component crops under varying growing conditions. We used Bayesian multilevel modeling fit to data from 20 long-term cropping systems datasets in North America (434 site-years, 36,000 observations). Rotation- and crop-level productivity were quantified as dollar output, using price coefficients derived from National Agriculture Statistics Service (NASS) price data (included in repository). Growing condtions were quantified using an Environmental Index calculated from site-year average output. Bayesian multilevel models were implemented using the 'brms' R package, which is a wrapper for Stan. Descriptions of all files are included in README.pdf.
DOI: 10.15468/dl.6knw36
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liriodendron tulipifera",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 139 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001159-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6csq8t
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Percichthys melanops)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001161-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2mlm95
title: CCDC 2430967: Experimental Crystal Structure Determination

description: Related Article: Hongbo Tai, Xuan Zhang, Yang Rong, Zhiliang Liu|2025|Chemical Science|16|15438|doi:10.1039/D5SC02794B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mlmb6
title: CCDC 2430968: Experimental Crystal Structure Determination

description: Related Article: Hongbo Tai, Xuan Zhang, Yang Rong, Zhiliang Liu|2025|Chemical Science|16|15438|doi:10.1039/D5SC02794B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.9u3muv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Graminicola striatus",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001164-250827131500795/datasets/export for details.
DOI: 10.15468/dl.v7b6aw
title: Occurrence Download

description: A dataset containing 101251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Engraulis ringens"
 ]
}

 The dataset includes 101251 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001112-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14720387
title: Herbaria provide a valuable resource for obtaining informative mRNA

description: Data (assemblies and outputs) accompanying the submission titled "Herbaria provide a valuable resource for obtaining informative mRNA".
DOI: 10.5281/zenodo.14720388
title: Herbaria provide a valuable resource for obtaining informative mRNA

description: Data (assemblies and outputs) accompanying the submission titled "Herbaria provide a valuable resource for obtaining informative mRNA".
DOI: 10.15468/dl.wa48b9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysobothris nelsoni"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001167-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzx4qv
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranella olearium",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001165-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csvuhj
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Albizia decandra"
 ]
}

 The dataset includes 76 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001166-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xy9ss
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liriodendron tulipifera",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001169-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23et9x
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroides elegans",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 96 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001168-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxuc6g
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liriodendron tulipifera",
 "Country is Georgia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001170-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbamjh
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liriodendron tulipifera",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001171-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hu38vb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gampsorhynchus rufulus",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001173-250827131500795/datasets/export for details.
DOI: 10.15468/dl.akdjma
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synodontis zambezensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 76 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001172-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vr2tt
title: Occurrence Download

description: A dataset containing 49962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Cercis canadensis L.",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 {
 "not" : {
 "DatasetKey" : [
 "is Catalogue of Life"
 ]
 }
 }
 ]
}

 The dataset includes 49962 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001114-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9x6fc
title: Occurrence Download

description: A dataset containing 67967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Leonurus cardiaca"
 ]
}

 The dataset includes 67967 records from 489 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001082-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/8bk7do
title: Estrategias para integrar la diversidad y fortalecer la salud emocional en el aula ecuatoriana

description: El presente artículo tiene como objetivo analizar las estrategias pedagógicas que promueven la educación inclusiva y el bienestar socioemocional en el aula ecuatoriana, en el marco de la diversidad cultural y social del país. Para ello, se llevó a cabo una revisión narrativa de literatura académica publicada entre 2010 y 2024, incluyendo investigaciones indexadas en bases como Scopus, Scielo y Redalyc, así como documentos oficiales del Ministerio de Educación y de organismos internacionales. Los hallazgos evidencian que la inclusión educativa no solo responde a la eliminación de barreras de aprendizaje, sino que se fortalece cuando se integra con el acompañamiento socioemocional, favoreciendo climas escolares seguros, participativos y empáticos (UNESCO, 2020; Booth & Ainscow, 2015). Asimismo, se identificó que en Ecuador las políticas públicas han avanzado en lineamientos de educación inclusiva, aunque aún existen desafíos en la formación docente y en la implementación de programas de apoyo psicosocial (MINEDUC, 2022). El análisis muestra que el fortalecimiento de competencias socioemocionales —como la resiliencia, la empatía y la autorregulación— constituye un factor clave para mejorar el aprendizaje y el bienestar integral del estudiantado (CASEL, 2020; Elias, 2019). Se concluye que la integración de estrategias inclusivas y socioemocionales no solo garantiza la equidad educativa, sino que también contribuye a la construcción de comunidades escolares más justas y solidarias.

Palabras clave: educación inclusiva; bienestar socioemocional; diversidad; aula ecuatoriana.
DOI: 10.15468/dl.6jk6nd
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liriodendron tulipifera",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001177-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/24216
title: Chandra X-ray Observatory ObsId 24216

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.25574/25264
title: Chandra X-ray Observatory ObsId 25264

description: FEEDBACK IN THE EARLY UNIVERSE: THE POWER OF HIGH REDSHIFT X-RAY JETS
DOI: 10.25574/26422
title: Chandra X-ray Observatory ObsId 26422

description: The most X-ray luminous clusters of galaxies in the Universe
DOI: 10.25574/26423
title: Chandra X-ray Observatory ObsId 26423

description: Stellar activity with TESS and Chandra
DOI: 10.25574/26424
title: Chandra X-ray Observatory ObsId 26424

description: Stellar activity with TESS and Chandra
DOI: 10.15468/dl.29cx4v
title: Occurrence Download

description: A dataset containing 1860807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Robinia pseudoacacia, Roldana petasitis, Romulea rosea, Rorippa anceps, Rorippa austriaca, Rorippa indica, Rorippa palustris, Rorippa sylvestris, Rosa acicularis, Rosa alba, Rosa bracteata, Rosa canina, Rosa damascena, Rosa, Rosa gallica, Rosa glabrifolia, Rosa glauca, Rosa gorenkensis, Rosa laevigata, Rosa lucieae)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 1860807 records from 3970 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001145-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/rxxdw-rd737
title: Pseudomonas aeruinosa

description: This is from the transposon mutant library of Pseudomonas aeruginosa PAO1. The aim is to check for the presence of PL sub complexes in the absence of FliF protein.
description: <strong>Tilt Series Date:</strong> 2018-10-01</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -4.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Serial EM</p>
<strong>Collaborators and Roles:</strong> I obtained these cells from Dianne Newmann lab (Shannon Park)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were grown overnight at 37 C in LB with 100 ug/ml gentamicin</p>
<strong>Sample Preparation:</strong> Samples from the overnight culture were used to prepare the grids.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-01-16/rawdata/</p>Test_Pseudomonas_dfliF_3.mrc,  Tilt Series (Pixel Size 0.37 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Test_Pseudomonas_dfliF_3_full.rec,  Reconstruction (Pixel Size 1.48 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-01-16/3dimage_97305/Test_Pseudomonas_dfliF_3_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.uzn3ks
title: Occurrence Download

description: A dataset containing 2059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xenodon rabdocephalus"
 ]
}

 The dataset includes 2059 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005918-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/718xh-cg589
title: Legionella_delta-lspGHIJK

description: Legionella pneumophila Philadelphia-1_Lp02. Lacks all the T2SS major and minor pseudopilins.
description: <strong>Tilt Series Date:</strong> 2019-05-18</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-45.0°, 45.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent by Nicholas Cianciotto, Northwestern University. Data collected and processed by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for this strain (2x concentrated culture, OD~4.8); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-18-14/rawdata/</p>DG8_201905180057.mrc,  Tilt Series (Pixel Size 0.26 nm), 882.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-18-14/rawdata/DG8_201905180057.mrc"
        > <i class="download icon"></i> Download </a></p>

        DG8_201905180057_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-18-14/3dimage_102886/DG8_201905180057_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zjcz0-55s10
title: B. diazoefficiens, hopanoids

description: delta HpnH strain, log phase
description: <strong>Tilt Series Date:</strong> 2019-11-06</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Bradyrhizobium diazoefficiens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Brittany Belin (Newman Lab, CalTech): strain construction, culture growth</p>
<strong>Purification / Growth Conditions / Treatment:</strong> log phase, treated with naringenin</p>
<strong>Sample Preparation:</strong> Broad vitrobot 22 degC, 100% humidity, manual back blotting. 4uL of 5X diluted cell (original O.D. 0.8). Quantifol copper R2/2 finder grid </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-11-06-40/rawdata/</p>dH_LG_64step2_21.mrc,  Tilt Series (Pixel Size 2.678 nm), 3.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        dH_LG_64step2_21.rec,  Reconstruction (Pixel Size 10.712 nm), 2.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-11-06-40/3dimage_108304/dH_LG_64step2_21.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tg61b-dqn69
title: JV9298

description: DotF-sfGFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2019-10-14</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -5.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> PNCC Krios 3</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Strain from Joe Vogel</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Late exponential/Early stationary</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper. Vitrobot 22 deg C, 100% humidity, 4uL of 2X concentrated culture, blot force 6, blot time 3 sec, drain time 1 sec, wait time 0 sec.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-128/rawdata/</p>JV9298_66_A4.mrc,  Tilt Series (Pixel Size 0.1323 nm), 14.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9298_66_A4.rec,  Reconstruction (Pixel Size 1.0584 nm), 2.9 GB  
        
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