cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5879778
title: Data for manuscript on objective phenotyping of alfalfa roots

description: These are images for the manuscript, "Objective phenotyping of root system architecture using image augmentation and machine learning in alfalfa." Alfalfa_root_ML_segmented.zip contains the root images segmented from the background using RootPainter and that were used as input for RhizoVision Explorer. Alfalfa_root_ML_color_photographs.zip contains the original color photographs of the roots, except that the circular scale and ID tag have been cropped out and filled with black to aid image analysis.
DOI: 10.48370/ofd/hmfcaq/ncdxhh
title: Gierasimiuk Piotr.pdf

description: :unav
DOI: 10.48370/ofd/hmfcaq
title: Charakterystyka gospodarki rolnej wsi Pogorzelce i ocena jej wpływu na środowisko przyrodnicze Puszczy Białowieskiej

description: Promotor: Józef Wójcik
DOI: 10.48370/ofd/okqih1/edtnmm
title: Kulesza Dariusz.pdf

description: :unav
DOI: 10.48370/ofd/okqih1
title: Zawartość węgla organicznego w glebach siedlisk wilgotnych i bagiennych

description: Promotor: Józef Wójcik
DOI: 10.48370/ofd/7c0eas/csw5jr
title: Romaniuk Izabela Joanna.pdf

description: :unav
DOI: 10.48370/ofd/7c0eas
title: Wpływ sposobu użytkowania ziemi na czystość wód powierzchniowych i gruntowych

description: Promotor: Józef Wójcik
DOI: 10.48370/ofd/9x5n8a/fzwvur
title: Poskrobko Adam.pdf

description: :unav
DOI: 10.48370/ofd/9x5n8a
title: Zawartość składników pokarmowych w igłach sosny na obszarze Puszczyu Białowieskiej na podstawie wyników monitoringu lasu

description: Promotor: Józef Wójcik
DOI: 10.5281/zenodo.6279848
title: Source models for "Across-slab propagation and low stress drops of deep earthquakes in the Kuril subduction zone"

description: This repository is for the model results for eight deep earthquakes in the Kuril subduction zone modelled using a second-degree moments method in csv format. Turner_et_al_2022_model_results_subvertical.csv - Source models with fixed Amin &gt; 5 km, assuming the sub-vertical fault plane reported in the GCMT catalogue. Event is the GCMT event code. Aspect ratio is the ratio (Amin/Amax). Duration is the rupture duration; Amax is the maximum characteristic fault dimension; Amin is the minimum characteristic fault dimension; Phi is the angle between Amax and the strike; v0 is the centroid velocity; Theta is the angle between the centroid velocity and the strike; and mft is the misfit between the data and the higher-order synthetics calculated for the best-fitting source model obtained from the Monte Carlo inversions. Turner_et_al_2022_model_results_subhorizontal.csv - Source models with fixed Amin &gt; 5 km, assuming the sub-vertical fault plane reported in the GCMT catalogue. Column headers are the same as in Turner_et_al_2022_model_results_subvertical.csv.
DOI: 10.5281/zenodo.6279847
title: Source models for "Across-slab propagation and low stress drops of deep earthquakes in the Kuril subduction zone"

description: This repository is for the model results for eight deep earthquakes in the Kuril subduction zone modelled using a second-degree moments method in csv format. Turner_et_al_2022_model_results_subvertical.csv - Source models with fixed Amin &gt; 5 km, assuming the sub-vertical fault plane reported in the GCMT catalogue. Event is the GCMT event code. Aspect ratio is the ratio (Amin/Amax). Duration is the rupture duration; Amax is the maximum characteristic fault dimension; Amin is the minimum characteristic fault dimension; Phi is the angle between Amax and the strike; v0 is the centroid velocity; Theta is the angle between the centroid velocity and the strike; and mft is the misfit between the data and the higher-order synthetics calculated for the best-fitting source model obtained from the Monte Carlo inversions. Turner_et_al_2022_model_results_subhorizontal.csv - Source models with fixed Amin &gt; 5 km, assuming the sub-vertical fault plane reported in the GCMT catalogue. Column headers are the same as in Turner_et_al_2022_model_results_subvertical.csv.
DOI: 10.6084/m9.figshare.19236423
title: Reproductive height, not vegetative height determines the loss of clonal grasses with N enrichment

description: <b>Reproductive height, not vegetative height determines the loss of clonal grasses with N enrichment in a temperate grassland</b>
DOI: 10.6084/m9.figshare.19236423.v1
title: Reproductive height, not vegetative height determines the loss of clonal grasses with N enrichment

description: <b>Reproductive height, not vegetative height determines the loss of clonal grasses with N enrichment in a temperate grassland</b>
DOI: 10.48370/ofd/g5it9h/oft1pb
title: Treszczkowska Justyna.pdf

description: :unav
DOI: 10.48370/ofd/g5it9h
title: Sezonowe zmiany w występowaniu fitoplanktonu w rzece Białej w okolicach Bielska Podlaskiego

description: Promotor: Halina Chomutowska
DOI: 10.6084/m9.figshare.17696531
title: Population genomics, gut microbiota, and transcriptional response to heat shock in Hong Kong oyster Magallana hongkongensis

description: The Hong Kong oyster Magallana hongkongensis, previously known as Crassostrea hongkongensis, is a true oyster species that native to the estuary-coast of Pearl River Delta in southern China. The species has long been farmed for hundreds of years, and with scientific, ecological, cultural and nutritional importance. However, there is only limited information on the genetic background and stress adaptation mechanism of M. hongkongensis, restricting the sustainable production and utilisation of the local oyster resources. Here, we presented the population structure analysis on oysters collected from Deep Bay (Shenzhen Bay) and Lantau Island in Hong Kong, the transcriptome analysis on heat shock responses and the gut microbiota profile of M. hongkongensis. A conserved genetic background of local oysters was uncovered by the whole genome resequencing on 49 individuals, and the results indicated a close relationship and adaptation process in local oyster populations. Genetic variants in homeobox and heat shock protein genes were identified and predicted with regulatory function. Oysters had also been incubated under temperate (25 °C) and heat shock (32 °C) conditions for 24 hours to investigate the stress responses. Transcriptome profiles revealed the heat-induced regulation on heat shock protein, protein binding genes and signal transduction genes. We also found the differential expression of two splicing factors might be regulated by alternative splicing, and their expression levels were higher under heat stress. In addition, the gut microbe community were detected by 16S rRNA sequencing, and Cyanobacteria, Proteobacteria and Spirochaetes were the top phyla found in local oysters. Our results provided the knowledge on transcriptomic responses to heat shock in local oyster and implied the molecular basis for the divergent adaptation to the changeable aquatic environment. We also suggested that gut microbiota might participate in the regulation of stress response in M. hongkongensis. These findings give new insights on different mechanisms of local adaptation in Hong Kong oysters and other molluscs.
DOI: 10.6084/m9.figshare.17696531.v4
title: Population genomics, gut microbiota, and transcriptional response to heat shock in Hong Kong oyster Magallana hongkongensis

description: The Hong Kong oyster Magallana hongkongensis, previously known as Crassostrea hongkongensis, is a true oyster species that native to the estuary-coast of Pearl River Delta in southern China. The species has long been farmed for hundreds of years, and with scientific, ecological, cultural and nutritional importance. However, there is only limited information on the genetic background and stress adaptation mechanism of M. hongkongensis, restricting the sustainable production and utilisation of the local oyster resources. Here, we presented the population structure analysis on oysters collected from Deep Bay (Shenzhen Bay) and Lantau Island in Hong Kong, the transcriptome analysis on heat shock responses and the gut microbiota profile of M. hongkongensis. A conserved genetic background of local oysters was uncovered by the whole genome resequencing on 49 individuals, and the results indicated a close relationship and adaptation process in local oyster populations. Genetic variants in homeobox and heat shock protein genes were identified and predicted with regulatory function. Oysters had also been incubated under temperate (25 °C) and heat shock (32 °C) conditions for 24 hours to investigate the stress responses. Transcriptome profiles revealed the heat-induced regulation on heat shock protein, protein binding genes and signal transduction genes. We also found the differential expression of two splicing factors might be regulated by alternative splicing, and their expression levels were higher under heat stress. In addition, the gut microbe community were detected by 16S rRNA sequencing, and Cyanobacteria, Proteobacteria and Spirochaetes were the top phyla found in local oysters. Our results provided the knowledge on transcriptomic responses to heat shock in local oyster and implied the molecular basis for the divergent adaptation to the changeable aquatic environment. We also suggested that gut microbiota might participate in the regulation of stress response in M. hongkongensis. These findings give new insights on different mechanisms of local adaptation in Hong Kong oysters and other molluscs.
DOI: 10.6084/m9.figshare.17696531.v3
title: Population genomics, gut microbiota, and transcriptional response to heat shock in Hong Kong oyster Magallana hongkongensis

description: The Hong Kong oyster Magallana hongkongensis, previously known as Crassostrea hongkongensis, is a true oyster species that native to the estuary-coast of Pearl River Delta in southern China. The species has long been farmed for hundreds of years, and with scientific, ecological, cultural and nutritional importance. However, there is only limited information on the genetic background and stress adaptation mechanism of M. hongkongensis, restricting the sustainable production and utilisation of the local oyster resources. Here, we presented the population structure analysis on oysters collected from Deep Bay (Shenzhen Bay) and Lantau Island in Hong Kong, the transcriptome analysis on heat shock responses and the gut microbiota profile of M. hongkongensis. A conserved genetic background of local oysters was uncovered by the whole genome resequencing on 49 individuals, and the results indicated a close relationship and adaptation process in local oyster populations. Genetic variants in homeobox and heat shock protein genes were identified and predicted with regulatory function. Oysters had also been incubated under temperate (25 °C) and heat shock (32 °C) conditions for 24 hours to investigate the stress responses. Transcriptome profiles revealed the heat-induced regulation on heat shock protein, protein binding genes and signal transduction genes. We also found the differential expression of two splicing factors might be regulated by alternative splicing, and their expression levels were higher under heat stress. In addition, the gut microbe community were detected by 16S rRNA sequencing, and Cyanobacteria, Proteobacteria and Spirochaetes were the top phyla found in local oysters. Our results provided the knowledge on transcriptomic responses to heat shock in local oyster and implied the molecular basis for the divergent adaptation to the changeable aquatic environment. We also suggested that gut microbiota might participate in the regulation of stress response in M. hongkongensis. These findings give new insights on different mechanisms of local adaptation in Hong Kong oysters and other molluscs.
DOI: 10.48370/ofd/0buwby/rnliva
title: Sikorski Krzysztof - Mapa sozologiczna.pdf

description: :unav
DOI: 10.48370/ofd/0buwby/qefygf
title: Sikorski Krzysztof.pdf

description: :unav
DOI: 10.48370/ofd/0buwby
title: Analiza walorów przyrodniczych i poziomu przekształceń środowiska na skutek antropopresji w gminie Zabłudów

description: Promotor: Elżbieta Malzahn
DOI: 10.48370/ofd/yce3ss/pnl4li
title: Ochrymiuk Emilia.pdf

description: :unav
DOI: 10.48370/ofd/yce3ss
title: Teoretyczna ocena zawartości ¹³⁷Cs na terenie Puszczy Białowieskiej po awarii reaktora w Czarnobylu

description: Promotor: Michał Piwnik
DOI: 10.48370/ofd/e1mqrk/iblu51
title: Żak Ewa.pdf

description: :unav
DOI: 10.48370/ofd/e1mqrk
title: Sezonowe zmiany w występowaniu pierwiastków biogennych na wybranych oczkach wodnych torfowisk Puszczy Białowieskiej

description: Promotor: Halina Chomutowska
DOI: 10.48370/ofd/iybjxx/dzzjm7
title: Bagińska Kinga_pdf.pdf

description: :unav
DOI: 10.48370/ofd/iybjxx
title: Analiza walorów przyrodniczych i poziomu przekształceń środowiska na skutek antropopresji w gminie Kulesze Kościelne

description: Promotor: Elżbieta Malzahn
DOI: 10.48370/ofd/bjqmoh/lxxxkw
title: Grygoruk Piotr praca 1.pdf

description: :unav
DOI: 10.48370/ofd/bjqmoh
title: Ocena jakości hodowlanej 10-letniego potomstwa 41 drzew matecznych świerka pospolitego w Puszczy Białowieskiej

description: Promotor: Adolf F. Korczyk
DOI: 10.48370/ofd/hlbdnq/klfd86
title: Bójko Justyna.pdf

description: :unav
DOI: 10.48370/ofd/hlbdnq
title: Zbiorowiska roślinne Uroczyska Świnobród w Nadleśnictwie Żednia

description: Promotor: Włodzimierz Kwiatkowski
DOI: 10.48370/ofd/n8mdgj/2jhzch
title: Czapska Justyna Ilona.pdf

description: :unav
DOI: 10.48370/ofd/n8mdgj
title: Aktualna ocena zagrożeń środowiska w Nadbużańskim Parku Krajobrazowym

description: Promotor: Elżbieta Malzahn
DOI: 10.48370/ofd/iu2htk/vqu9pp
title: Cywoniuk Anna.pdf

description: :unav
DOI: 10.48370/ofd/iu2htk
title: Dendroflora Gminy Michałowo

description: Promotor: Włodzimierz Kwiatkowski
DOI: 10.48370/ofd/lukdmk/hk7xzr
title: Sajewicz Monika Sylwia - Mapa.pdf

description: :unav
DOI: 10.48370/ofd/lukdmk/09bylo
title: Sajewicz Monika Sylwia.pdf

description: :unav
DOI: 10.48370/ofd/lukdmk
title: Plankton wybranych cieków wodnych na terenie Puszczy Białowieskiej

description: Promotor: Halina Chomutowska
DOI: 10.6084/m9.figshare.19236489
title: DATA.pdf

description: research data
DOI: 10.48370/ofd/sp6tbl/vo9jbq
title: Janowski Jerzy.pdf

description: :unav
DOI: 10.48370/ofd/sp6tbl
title: Zmiana wskaźników fizykochemicznych gleby (gęstość właściwa,uziarnienie) pod wpływem czynników antropogenicznych na obszarze rolnym w obrębie wsi Trywieża, gmina Hajnówka, powiat Hajnowski

description: Promotor: Michał Piwnik
DOI: 10.48370/ofd/ztbynu/y02tch
title: Kudlewska Magdalena.pdf

description: :unav
DOI: 10.48370/ofd/ztbynu
title: Plankton wybranych oczek wodnych Puszczy Białowieskiej

description: Promotor: Kudlewska Magdalena
DOI: 10.5281/zenodo.6280300
title: Raw Data for the article: Impaired anti-SARS-CoV-2 humoral and cellular immune response induced by Pfizer-BioNTech BNT162b2 mRNA vaccine in solid organ transplanted patients

description: SARS‐CoV‐2 vaccine is considered the primary health strategy able to end the current COVID‐19 pandemic. This viral infection impacts more severely solid organ transplant recipients (SOTRs) than general population, but the effect of vaccination in this subgroup of immunosuppressed patients is not known due to their exclusion from vaccination trials. Preliminary reports suggest a lower antibody production after BNT162b2 Pfizer/BioNTech mRNA‐vaccine, 1 , 2 , 3 , 4 but no data are currently available on the elicited virus‐specific T cell responses.
DOI: 10.5281/zenodo.6280299
title: Raw Data for the article: Impaired anti-SARS-CoV-2 humoral and cellular immune response induced by Pfizer-BioNTech BNT162b2 mRNA vaccine in solid organ transplanted patients

description: SARS‐CoV‐2 vaccine is considered the primary health strategy able to end the current COVID‐19 pandemic. This viral infection impacts more severely solid organ transplant recipients (SOTRs) than general population, but the effect of vaccination in this subgroup of immunosuppressed patients is not known due to their exclusion from vaccination trials. Preliminary reports suggest a lower antibody production after BNT162b2 Pfizer/BioNTech mRNA‐vaccine, 1 , 2 , 3 , 4 but no data are currently available on the elicited virus‐specific T cell responses.
DOI: 10.48370/ofd/iyifrn/hx2izg
title: Dzwoniarska Paulina.pdf

description: :unav
DOI: 10.48370/ofd/iyifrn
title: Wpływ wybranych detergentów na przeżywalność organizmów wskaźnikowych

description: Promotor: Halina Chomutowska
DOI: 10.48370/ofd/rlwqge/s25sqa
title: Gołaszewska Joanna.pdf

description: :unav
DOI: 10.48370/ofd/rlwqge
title: Sezonowe zmiany w występowaniu fitoplanktonu w rzece Leśna Prawa

description: Promotor: Halina Chomutowska
DOI: 10.6084/m9.figshare.16946113
title: In Situ Technological Innovation Diffusion Rate Accuracy Assessment

description: In Situ Technological Innovation Diffusion Rate Accuracy Assessment<br><br>Principal dataset sources. Sources The Cross-country Historical Adoption of Technology (CHAT) Dataset. No. w15319. National Bureau of Economic Research, 2009. [67] Discovered via Horace Dediu, Clayton Christensen Institute. [68] Note: Only U.S. data was extracted and used. Comin, D.A., & Hobijn, B. (2004). Cross-country technology adoption: making the theories face the facts. Journal of Monetary Economics 51.1 (2004): 39-83. [69] Discovered via Ritchie, H., & Roser, M. (2017). Technology Diffusion & Adoption. [70] Note: Only U.S. data was extracted and used. Cox, W. M., & Alm, R. (1997). Time Well Spent: The Declining Real Cost of Living in America. Annual Report Federal Reserve Bank of Dallas, pages 2-24 [71] Derived and built from American Association of Home Appliance Manufacturers; Cellular Telephone Industry Association; Electrical Merchandising, various issues; Information Please Almanac; Public Roads Administration; Television Bureau of Advertising; U.S. Bureau of the Census (Census of Housing; Current Population Reports; Historical Statistics of the United States, Colonial Times to 1970; Statistical Abstract of the United States); U.S. Department of Energy; U.S. Department of Transportation.
DOI: 10.6084/m9.figshare.16946113.v1
title: In Situ Technological Innovation Diffusion Rate Accuracy Assessment

description: In Situ Technological Innovation Diffusion Rate Accuracy Assessment<br><br>Principal dataset sources. Sources The Cross-country Historical Adoption of Technology (CHAT) Dataset. No. w15319. National Bureau of Economic Research, 2009. [67] Discovered via Horace Dediu, Clayton Christensen Institute. [68] Note: Only U.S. data was extracted and used. Comin, D.A., & Hobijn, B. (2004). Cross-country technology adoption: making the theories face the facts. Journal of Monetary Economics 51.1 (2004): 39-83. [69] Discovered via Ritchie, H., & Roser, M. (2017). Technology Diffusion & Adoption. [70] Note: Only U.S. data was extracted and used. Cox, W. M., & Alm, R. (1997). Time Well Spent: The Declining Real Cost of Living in America. Annual Report Federal Reserve Bank of Dallas, pages 2-24 [71] Derived and built from American Association of Home Appliance Manufacturers; Cellular Telephone Industry Association; Electrical Merchandising, various issues; Information Please Almanac; Public Roads Administration; Television Bureau of Advertising; U.S. Bureau of the Census (Census of Housing; Current Population Reports; Historical Statistics of the United States, Colonial Times to 1970; Statistical Abstract of the United States); U.S. Department of Energy; U.S. Department of Transportation.
DOI: 10.25934/pr00006124.0
title: Available IPD datapackage for study 'A Phase 2b, Dose-ranging Study to Evaluate the Efficacy and Safety of MEDI-563 in Adults With Uncontrolled Asthma'

description: The primary objective of the study is to evaluate the effect of multiple-dose subcutaneous administrations of MEDI-563 on adults with uncontrolled asthma.
DOI: 10.4228/zalf.bf9z-6x30
title: BIBS-dataset: Biodiversity maintains soil multifunctionality and soil organic carbon in novel urban ecosystems

description: In this study, we assessed the influence of above- and belowground diversity, as well as urbanization and plant invasions, on multifunctionality and organic carbon stocks of soils in non-manipulated grasslands along an urbanization gradient in Berlin, Germany. We focused on plant diversity (measured as species richness and functional trait diversity) and, in addition, on soil organism diversity as a potential mediator for the relationship of plant species diversity and ecosystem functioning. Our results showed positive effects of plant diversity on soil multifunctionality and soil organic carbon stocks along the entire gradient. Structural equation models revealed that plant diversity enhanced soil multifunctionality and soil organic carbon by increasing the diversity of belowground organisms. These positive effects of plant diversity on soil multifunctionality and soil fauna were not restricted to native plant species only, but were also exerted by non-native species, although to a lesser degree. We conclude that enhancing diversity in plants and soil fauna of urban grasslands can increase the multifunctionality of urban soils and also add to their often underestimated but very valuable role in mitigating effects of climate change.
DOI: 10.5281/zenodo.6280673
title: Raw Data for the article: Klebsiella pneumoniae Lipopolysaccharides Serotype O2afg Induce Poor Inflammatory Immune Responses Ex Vivo

description: Currently, <em>Klebsiella pneumoniae</em> is a pathogen of clinical relevance due to its plastic ability of acquiring resistance genes to multiple antibiotics. During <em>K. pneumoniae</em> infections, lipopolysaccharides (LPS) play an ambiguous role as they both activate immune responses but can also play a role in immune evasion. The LPS O2a and LPS O2afg serotypes are prevalent in most multidrug resistant <em>K. pneumoniae</em> strains. Thus, we sought to understand if those two particular LPS serotypes were involved in a mechanism of immune evasion. We have extracted LPS (serotypes O1, O2a and O2afg) from <em>K. pneumoniae</em> strains and, using human monocytes ex vivo, we assessed the ability of those LPS antigens to induce the production of pro-inflammatory cytokines and chemokines. We observed that, when human monocytes are incubated with LPS serotypes O1, O2a or O2afg strains, O2afg and, to a lesser extent, O2a but not O1 failed to elicit the production of pro-inflammatory cytokines and chemokines, which suggests a role in immune evasion. Our preliminary data also shows that nuclear translocation of NF-κB, a process which regulates an immune response against infections, occurs in monocytes incubated with LPS O1 and, to a smaller extent, with LPS O2a, but not with the LPS serotype O2afg. Our results indicate that multidrug resistant <em>K. pneumoniae</em> expressing LPS O2afg serotypes avoid an initial inflammatory immune response and, consequently, are able to systematically spread inside the host unharmed, which results in the several pathologies associated with this bacterium.