cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/yeam9-ezk19
title: Hyphomonas session2 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-08-29</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-29-11/rawdata/</p>08aug29b_a1_011.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08aug29b_a1_011_1k.rec,  Reconstruction (Pixel Size 1.264 nm), 60.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-29-11/3dimage_5348/08aug29b_a1_011_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/50xfz-4nf05
title: Agro_C58

description: Agro_liq_22C
description: <strong>Tilt Series Date:</strong> 2014-06-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> AB media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-06-26-2/rawdata/</p>c58_22C-liq20001.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-06-26-2/rawdata/c58_22C-liq20001.mrc"
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        2_full.rec,  Reconstruction (Pixel Size 2.0 nm), 798.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-06-26-2/3dimage_56628/2_full.rec"
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DOI: 10.15468/dl.fk6q8q
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "TaxonKey is Tursiops truncatus gephyreus"
 ]
}

 The dataset includes 46 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047802-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9rnat-edt43
title: Spore16

description: Sporulating cell, vegetative cell
description: <strong>Tilt Series Date:</strong> 2008-06-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown anaerobically on CO2+glu</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-06-13-10/rawdata/</p>spore16.mrc,  Tilt Series (Pixel Size 0.961 nm), 864.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-06-13-10/rawdata/spore16.mrc"
        > <i class="download icon"></i> Download </a></p>

        spore16_full.rec,  Reconstruction (Pixel Size 1.922 nm), 922.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/d4pp7-pvf58
title: Mesoplasma florum dual axis

description: Mesoplasma florum, dual axis, total dose 110 e/A2 - 1
description: <strong>Tilt Series Date:</strong> 2005-02-18</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> Mesoplasma florum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-70.0°, 70.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight culture in Mycoplasma media</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-02-18-1/rawdata/</p>cell1_22kx_10um_Feb18.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        c1_22k_10_p6.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.st5pxs
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fritillaria imperialis",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 342 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047804-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/qht4h-s3009
title: Pdb 110408 696

description: Prosthecobacter debontii, 08nov15a_b696_No1_016,
description: <strong>Tilt Series Date:</strong> 2008-11-15</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-11-15-16/rawdata/</p>08nov15a_b696_No1_016.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov15a_b696_No1_016.rec,  Reconstruction (Pixel Size 1.9 nm), 217.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2ygh6-wzv94
title: Pdb 111908 743

description: Prosthecobacter debontii, 08dec16b_ec_001, putative btub structure (2 tubes),
description: <strong>Tilt Series Date:</strong> 2008-12-16</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-16-6/rawdata/</p>08dec16b_ec_001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-16-6/rawdata/08dec16b_ec_001.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec16b_ec_001_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-16-6/3dimage_13346/08dec16b_ec_001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mwb4d-zbe31
title: Pdb 110408 696

description: Prosthecobacter debontii, 08nov15a_b696_No1_028,
description: <strong>Tilt Series Date:</strong> 2008-11-15</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-11-15-27/rawdata/</p>08nov15a_b696_No1_028mrc.mrc,  Tilt Series (Pixel Size 0.95 nm), 998.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov15a_b696_No1_028.rec,  Reconstruction (Pixel Size 1.9 nm), 275.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/z2qs7-28j37
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara</p>
<strong>Collaborators and Roles:</strong> Pat Zabryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> C58 wild type</p>
<strong>Sample Preparation:</strong> 200uM AS, grown on agar + liquid for 2 days</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-10/3dimage_29406/</p>c58_au20010_part121_6.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        c58_au20010.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-10/rawdata/c58_au20010.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.pftgpy
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fritillaria imperialis",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 103 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047803-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/b72ng-8bw61
title: grid2spore7

description: Spore, completely engulfed,
description: <strong>Tilt Series Date:</strong> 2008-05-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Anaerobic growth on CO2+Glu</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-05-14-10/rawdata/</p>grid2spore7.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-05-14-10/rawdata/grid2spore7.mrc"
        > <i class="download icon"></i> Download </a></p>

        grid2spore7_full.rec,  Reconstruction (Pixel Size 1.922 nm), 981.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-05-14-10/3dimage_2274/grid2spore7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9yd9a-3mn68
title: Cells of Acetonema longum

description: One healthy and one dead cells, vegetative cell
description: <strong>Tilt Series Date:</strong> 2007-12-18</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 57.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Anaerobic growth on CO2</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2007-12-18-1/rawdata/</p>cane1.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        cane1_full.rec,  Reconstruction (Pixel Size 2.518 nm), 392.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.d2wq9u
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Strabomantis anatipes"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047805-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/wc549-c3t05
title: Hyphomonas session4 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-33/rawdata/</p>08nov01a_b17x1_033.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_033_1k.rec,  Reconstruction (Pixel Size 1.26 nm), 110.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/816sh-z0110
title: Mesoplasma florum dual axis

description: Mesoplasma florum, dual axis, total dose 110 e/A2 - 1
description: <strong>Tilt Series Date:</strong> 2004-09-02</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> Mesoplasma florum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight culture in Mycoplasma media</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-09-02-1/rawdata/</p>mf1_pos5_dta_090204.mrc,  Tilt Series (Pixel Size 6.7 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        mf1_pos6_dtb_090204.mrc,  Tilt Series (Pixel Size 6.7 nm), 1.1 GB  
        
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DOI: 10.22002/rt9sg-v0r61
title: HUVECs infx pNLBg1I_endptvirus

description: Raw data files of HUVECs infx pNLBg1I_endptvirus
description: <strong>Tilt Series Date:</strong> 2013-11-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> pNLGFPBg1I obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBg1I. Sample was frozen after endpoint of virus infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-11/rawdata/</p>13nov04_Endptvirus_montage_21x21tgt_0005.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
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        13nov04_Endptvirus_montage_21x21tgt_0005_part121_64.rec,  Reconstruction (Pixel Size 2.24 nm), 430.6 MB  
        
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