cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.g57faz
title: Occurrence Download

description: A dataset containing 17031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-194.14954 16.88730,-38.85046 16.88730,-38.85046 79.11270,-194.14954 79.11270,-194.14954 16.88730))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus occidentalis Greene, 1858"
 ]
}

 The dataset includes 17031 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0381702-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/oioktl
title: ICV du porc sous cahier des charges Porc Bien être dans AGRIBALYSE®

description: Ce rapport décrit l’inventaire Porc non castré décrit par le cahier des charges « Porc Bien-Être ». Cooperl a développé une filière d’élevage de porcs non castrés (mâles entiers) sous le cahier des charges « Porc Bien-Être » (cahier des charges incluant la non castration des mâles, mais également des spécificités génétique et alimentaire et une conduite adaptée). Cette démarche intègre les mâles et les femelles d’un même élevage. Elle représente une part de 90% de la production porcine Cooperl, soit 4,9 millions de porcs et 455 000 tonnes équivalent carcasses (plus de 20% de la production nationale de porcs). Les mâles de cette filière ont un indice de consommation inférieur à l’indice des mâles castrés conduisant à des performances alimentaires globales (ensemble porcs mâles et femelles) améliorées pour les élevages engagés dans la démarche Porc Bien-Être.
DOI: 10.57745/p7ii5i
title: Lucerne genetic diversity for living mulch with winter wheat

description: Data collected in a field trial with 30 lucerne accessions grown with winter wheat during 2 years, in Lusignan, France
DOI: 10.57745/mwv5h4
title: In-situ Data of occupant behavior and thermal comfort in 11 offices in a naturally ventilated building during 6 summers

description: As summer heatwaves become more intense and more frequent, achieving thermal comfort in buildings without relying on air conditioning has become critical to meet CO₂ emission targets. To address this, a field study was conducted in an office building at INES, Le Bourget-du-Lac, France. The bioclimatic design of the building takes advantage of the local climate, influenced by mountain ranges and Bourget Lake, to minimize overheating while ensuring occupant comfort thanks to solar control, natural ventilation and thermal inertia. It optimizes natural ventilation through features such as a green atrium with automated openings and internal leafs. Pedestal fans completed this strategy to maximize occupant comfort without air-conditioning. Data were collected over six years (2017-2022) through sensors networks and thermal comfort surveys thanks to a Human Machine Interface (HMI), which has been developed and improved over the different campaigns. The surveys gather occupant perception of comfort, clothing details, and the effect of draughts, while sensors monitored door and window openings, office temperatures and fan use. Instrumentation includes temperature sensors connected to computers, plug-in power sensors for fans, and openings status sensors. Data were recorded every 5–10 minutes using a Jeedom home automation system linked to a Raspberry Pi, with a Python script transferring data to a central database. Across the study, up to 29 participants contributed annually, generating datasets ranging per year from 250 to 17,500 responses. This dataset supports research into the relationship between thermal comfort, occupant perception, and passive cooling strategies, such as natural and mixed-mode ventilation. It provides insights into variations in occupant comfort and behavior across similar offices environment and forms a basis for studying building overheating, operational performance, and the effectiveness of passive cooling strategies. This dataset also facilitates the development of ventilation control algorithms and cascade cooling strategies by analyzing the conditions under which occupants use desk fans, helping optimize mixed-mode ventilation systems for comfort and efficiency.
DOI: 10.57745/n98nen
title: MADAM: Metropolitan Area Dams

description: MADAM is a dataset of dams located in metropolitan France (mainland and Corsica). It consists of location and volumes of dams.
DOI: 10.57745/nkftah
title: Database on the durability of the piers of the Ile de Ré bridge in France (2015-2018)

description: This DATABASE "Durability of the piers of the île de Ré bridge in France" gathers the results of the concrete durability assessment of the île de Ré bridge carried out in 2015-2018.
DOI: 10.57745/nw7qbv
title: Gene Expression RT-qPCR Data of Swine Influenza and PRRSV Interaction in Alveolar Macrophages

description: Abstract of the publication : Porcine respiratory disease complex represents a major challenge for the swine industry, with swine influenza A virus (swIAV) and porcine reproductive and respiratory syndrome virus (PRRSV) being major contributors. Epidemiological studies have confirmed the co-circulation of these viruses in pig herds, making swIAV-PRRSV co-infections expected. A couple of in vivo co-infection studies have reported replication interferences between these two viruses. Herein, using a reductionist in vitro model, we investigated the potential mechanisms of these in vivo interferences. We first examined the impact of swIAV on porcine alveolar macrophages (AMs) and its effects on AM co-infection by PRRSV. This was done either in monoculture or in co-culture with respiratory tracheal epithelial cells to represent the complexity of the interactions between the viruses and their respective target cells (epithelial cells for swIAV and AMs for PRRSV). AMs were obtained either from conventional or specific pathogen-free (SPF) pigs. SwIAV replication was abortive in AMs, inducing cell death at high multiplicity of infections. In AMs from three out of four conventional animals, swIAV showed no impact on PRRSV replication. However, inhibition of PRRSV multiplication was observed in AMs from one animal, accompanied by an early increase in the expression of interferon (IFN)-I and IFN-stimulated genes. In AMs from six SPF pigs, swIAV inhibited PRRSV replication in all batches, with an early induction of antiviral genes. Co-culture experiments involving tracheal epithelial cells and AMs from either SPF or conventional pigs all showed swIAV-induced inhibition of PRRSV replication, together with early induction of antiviral genes. These findings highlight the complex interactions between swIAV and PRRSV in porcine AMs. They underscore the importance of host factors, such as sanitary status, in modulating viral propagation and disease outcomes. Our co-culture experiments demonstrated that swIAV inhibits PRRSV replication more effectively in the presence of respiratory tracheal epithelial cells, suggesting a synergistic antiviral response between AMs and epithelial cells, consistent with in vivo experiments. This justifies further investigation into viral interactions and the role of the respiratory innate immune memory.
DOI: 10.57745/odnbpc
title: Experimental data on spectral reflectivities of various helmets worn by firefighters in service

description: This database contains the spectral reflectivities of several helmets worn by firefighters in service: 16 helmets have been tested on various conditions (colored helmets, soiled helmets ...). Helmet names are specified in the associated article. For each helmet, a unique file contains the averaged value of 5000 tests, with in the first column the wavenumber in cm^(-1) and in the second colnum the associated spectral reflectivity. The wavenumber domain is between 500 and 6000 cm^(-1). These raw data could be handled by future users to be used in numerical models to represent the heat transfer inside a helmet.
DOI: 10.57745/nwzoae
title: The Effect of Granulometry of Carbonaceous Materials and Application Rates on the Availability of Soil-Bound Dichloro-diphenyltrichloroethane (DDT) and Its Metabolites

description: Biochars (BCs) and activated carbons (ACs) are well-known carbon-rich materials that are being increasingly studied in environmental sciences for water treatment applications to remediate pol-lutant sequestration in soil. This study aimed to assess the impact of Sargasso BC particle size and amendment rate on the environmental availability of DDT and DDT metabolites in two distinct Kazakh soils. These two soils were collected in the vicinity of storehouse facilities in Kyzylkairat and Beskainar that store banned pesticides. They presented very distinct concentration levels of DDT and DDT metabolites. Three different types of carbonaceous matrices were tested: Sargasso BC and two commercial ACs (ORBOTM and DARCO©). For the granulometry effect, Sargasso BC was ground, and two particle sizes were tested (&lt;150 µm, &gt;150 µm) and compared to an un-ground material. Four distinct application rates were tested (0.25, 0.5, 1, and 2% (w/w)). After a three-month maturation period, environmental availability was assessed using an ISO/DIS 16751, part B-modified methodology. Interestingly, the best reductions in DDT environmental availability were obtained with the finest particle size (both ACs and Sargasso BC &lt; 150 µm). More specifical-ly, the effectiveness of the strategy seemed to depend on many factors. Firstly, a clear soil effect was demonstrated, suggesting that the more contaminated the soil, the more efficient this strate-gy may be. Secondly, the results showed that an increase in the amendment rate improves the immobilization of DDT and DDT metabolites. The sequestration material demonstrated different efficiency values (up to 58 ± 4% for Sargasso BC &lt; 150 µm and 85 ± 4% for DARCO at a 2% applica-tion rate). Finally, a clear molecule effect was displayed, demonstrating the following immobiliza-tion order: p,p’-DDE &gt; p,p’-DDD &gt; p,p’-DDT &gt; o,p’-DDT.
DOI: 10.57745/oj2go2
title: Hydrological projections (1985-2100) of the Albarine DRN (France)

description: Hydrological model outputs at daily time step for the projection simulations (1985-2100) in the Albarine DRN (France). Simulated discharge, baseflow an state of flow (flowing/dry) is spatially distributed at the reach scale. Other hydroclimatic variables (temperature, precipitation, rainfall, snowfall, potential evapotranspiration, actual evapotranspiration, vegetation interception, snow water equivalent, saturation of the soil layer, saturation of the grounwater layer) are spatially aggregated at the catchment scale. Hydrological projections were produced for 3 SSP scenarios and 5 climate models.
DOI: 10.57745/oq5jdg
title: Impact des digestats de méthanisation sur la qualité biologique des sols : Evaluation d’impact à long terme sur des sites expérimentaux

description: Ce jeu de données contient les résultats d'indicateurs de la qualité biologique des sols en réponse à des apports de digestats de méthanisation. Ces données ont été obtenues en conditions réelles de terrain. Les sites expérimentaux sont ceux du SOERE-PRO (EFELE et PROspective) et du lycée Agricole d’Obernai (DIGEO). Ces sites présentent des contextes pédoclimatiques différents (océanique (Bretagne) vs continental (Alsace)) et épandent de façon récurrente, depuis plusieurs années déjà, des types de digestats variés et caractéristiques des activités de leur territoire d’appartenance. Liens vers les sites expérimentaux : - SOERE-PRO PROspective - SOERE-PRO EFELE - DigéO Lycée Agricole d'Obernai
DOI: 10.57745/pocsjp
title: MassiveFold data for target T1299

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/lwkglu
title: Curated Dataset of Association Constants Between a Cyclodextrin and a Guest for Machine Learning

description: Determining the association constant between a cyclodextrin and a guest molecule is an important task for various applications in various industrial and academical fields. However, such a task is time consuming, tedious and requires samples of both molecules. A significant number of association constants and relevant data is available from the literature. The availability of data makes the use of machine learning techniques to predict association constants possible. However, such data is mainly available from tables in articles or appendices. It is necessary to make them available in a computer friendly format and to curate them. Furthermore, the raw data need to be enriched with physicochemical information about each molecule and when such information does not allow to discriminate molecules, some additional data is needed. We present a dataset built from data gathered from the literature.
DOI: 10.57745/manmux
title: Data set related to the article: "Working for food is related to range use in free-range broiler chickens"

description: Data from Ferreira et al. Foraging behavior shows individual-consistency over time, and predicts range use in slow-growing free-range male broiler chickens The first sheet contains data obtained during the Ranging behavior measurements. The variable recorded was the individual range visits during the period 2 (after range access). The second sheet contains data obtained during the Behavioral observations (home environment condition). The variable recorded was: Standing, Resting, Locomotion, Foraging, Feeding/Drinking, Comfort behaviors, Environment pecking and Positive social pecking. The third sheet contains data obtained during the Contra-freeloading test The variable recorded was the time spent in each of the chambers.The time spent on each chamber across the two trials was combined to calculate a preference index (PI). This index could vary between - 1.0 and 1.0. The project PPILOW has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N°816172.
DOI: 10.57745/nvbz7b
title: Supplementary data - ARTICLE - Sink-source driven metabolic acclimation of winter oilseed rape leaves (Brassica napus L.) to drought

description: The following files are available: Table S1. Characteristics of the primers used in this study. Table S2. Complete dataset for physiological variables and metabolite contents. Table S3. Complete dataset for relative gene expression and enzyme activities. Table S4. Statistical comparison of control and drought conditions for the physiological variables and metabolites measured in this study. A "supplemental figures" file containing: Fig. S1. Effect of drought on leaf ontogeny and soil water content. Fig. S2. Stability across samples for the reference genes selected for qPCR analysis. Fig. S3. Stability of the quality control (QC) samples over the different runs of metabolite quantification by UPLC-DAD and GC-FID. Fig. S4. Leaf expansion rate and leaf growth rate during the experiment. Fig. S5. Relative expression of drought-responsive genes. Fig. S6. Relative expression of genes involved in starch metabolism. Fig. S7. Relative expression of genes involved in sucrose metabolism. Fig. S8. Relative expression of P5CS1 genes (proline biosynthesis). Fig. S9. Relative expression of genes involved in nitrogen remobilisation. Fig. S10. Absolute contents for Ala, Asp, GABA, Val, Leu, Ile, Lys, Tyr, Phe and Trp in leaf 11 and leaf 4. Fig. S11. Nitrate and ammonia contents.
DOI: 10.57745/ooaizp
title: A set of images and movies of solar activity events

description: This is a multimedia set of multi wavelength images and movies of solar activity events, observed with many space borne instruments, such as Hinode (JAXA/NASA), Stereo/NASA, Solar Dynamics Observatory (SDO/NASA) and ground based observatories. The set contains rare events, such as very energetic flares (X9 of September 2017, X17-X28 of October-November 2003), coronal mass ejections, long filaments, sunspots, Moreton waves, magnetic reconnection, large magnetic loops and solar cycle data.
DOI: 10.57745/mb71au
title: ABlab_IFNLGutRestitution_IonTorrent_bulkRNA-seq

description: To determine the transcriptional programs initiated by IFN-λ to delay tissue restitution, we isolated intestinal crypts from the small intestine of VilCREIfnlr1fl/fl mice or WT littermates that have been irradiated and performed targeted transcriptomics analysis WT mice and VilCREIfnlr1fl/fl mice received 11 Gy ionizing radiation, with lead shielding of the upper body. Targeted transcriptomics was performed on freshly isolated small intestinal crypts. Barcoded libraries were prepared using the Ion AmpliSeq Transcriptome Mouse Gene Expression Panel, Chef-Ready Kit (A36412; Thermo Scientific)
DOI: 10.57745/n3oayc
title: Zircon analyses from Evisa peralkaline granite (France)

description: Zircon analyses from the Evisa peralkaline rare-metal granite (Corsica, France). Both trace-elements and Hf isotopes were analysed in-situ by LA-ICP-MS and LA-MC-ICP-MS, respectively. As a first objective, we aimed to explore the circumstances surrounding the crystallization and subsequent alteration of amphibole-bearing rare-metal granites, which hold significant scientific interest. To date, only about a dozen rare-metal granites of this type have been studied, with the Strange Lake (Canada) granite being the only one receiving extensive examination. The second important outcome consists of compelling evidence challenging the current understanding of trace-element and isotope behaviour in zircon.
DOI: 10.57745/oluanp
title: Determination of carbon and nitrogen content by elemental analysis of lignins

description: Lab-extracted organosolv lignins have been analysed using elemental analysis to quantify the nitrogen and carbon content. This dataset includes: - 1 file explaining the method; - 1 file summarizing the mass content of carbon and nitrogen for organosolv lignin samples.
DOI: 10.57745/oy6ml9
title: MassiveFold data for target T1269

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/q1zpja
title: Data from "TransfertN" project: Plant biomass, forage quality and residue composition in alfalfa-fescue mixtures

description: The dataset is composed of shoot and root biomass measurements and biochemical analyzes (C and N elemental analyses; delta13C, delta15N isotopic analyses) conducted on each species in a six-year field experiment comparing alfalfa-tall fescue mixtures with corresponding alfalfa and tall fescue pures stands.
DOI: 10.57745/nkju0h
title: MassiveFold data for targets T1219v1 and T1219v2

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated in total for both T1219v1 and T1219v2 targets = 1005 x 8 sets of parameters. These predictions were computed as a A12 stoichiometry. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/o4oja2
title: High quality food bacterial genomic ressources from fermented vegetables

description: This dataset is associated with a collection of 39 complete bacterial genomes (157 replicons in total) of high sequencing quality and submitted in May 2024 to European Nucleotide Archive (ENA). These strains belong predominantly to homo- and hetero-lactic acid bacteria pivotal in the fermentation process of various vegetables, although other taxa (e.g. Hafnia, Rahnella, Bacillus, Enterococcus and Pseudomonas) were also considered. This dataset also includes the production of genomes for lactic acid bacteria species that have rarely been sequenced, such as Levilactobacillus cerevisiae, Levilactobacillus yonginensis or Pediococcus parvulus. The strains demonstrated optimal growth performance during vegetable fermentation and their genome was sequenced using a combination of third generation long-reads ONT and short-reads Illumina technologies. These bacterial ressources and associated genomic data were characterized during the Agence Nationale de la Recherche (ANR) Metasimfood project (https://www.metasimfood.inrae.fr/) and are subsequently made publicly available for academic research purpose on fermented foods. These strains will be used in the frame of ANR metasimfood project, as core microbial ressources for the design of microbial consortia for pant-based fermented foods. The various files of the dataset summarize either genomic data (metasimfood_genomic_data.csv) such as accession numbers, size of replicons, sequencing coverage; or metadata associated with the strains (metasimfood_metadata_strains.csv) such as isolation sources, availibility, owner's contac. Specific genomic features detection such as prophages and plasmid (metasimfood_provirus_summary.csv; metasimfood_provirus-results.csv; metasimfood_plasmid_results.csv) are also available.
DOI: 10.57745/obxnab
title: WP4 Test Values Anhydritpowder (Undergroundmine Hüttenheim, Germany) and Clay-Sulfat-Rock (Belchentunnel, Swiss) exposed to diffrent humidities

description: WP4 Test Values Anhydritpowder (Undergroundmine Hüttenheim, Germany) and Clay-Sulfat-Rock (Belchentunnel, Swiss) under diffrent humidities