cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2py5c6
title: CCDC 2500688: Experimental Crystal Structure Determination

description: Related Article: Elif Yıldız Gül, Mine Aksoy, Buse Köse, Aykut Öztekin, Bünyemin Çoşut, Esra Tanrıverdi Eçik|2026|J.Mol.Struct.|1358||doi:10.1016/j.molstruc.2026.145366
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2py5d7
title: CCDC 2500689: Experimental Crystal Structure Determination

description: Related Article: Elif Yıldız Gül, Mine Aksoy, Buse Köse, Aykut Öztekin, Bünyemin Çoşut, Esra Tanrıverdi Eçik|2026|J.Mol.Struct.|1358||doi:10.1016/j.molstruc.2026.145366
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2q2ptb
title: CCDC 2505042: Experimental Crystal Structure Determination

description: Related Article: Mingrui Li, Xiao Song, Jiuli Xia, Xueyun Lu, Jiaqiong Sun, Yan Li, Guangfan Zheng, Tao Xiong, Qian Zhang|2026|Org.Lett.|||doi:10.1021/acs.orglett.5c04959
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.j449c
title: Data from: Differential gene expression according to race and host plant in the pea aphid

description: Host-race formation in phytophagous insects is thought to provide the
 opportunity for local adaptation and subsequent ecological speciation.
 Studying gene expression differences amongst host races may help to
 identify phenotypes under (or resulting from) divergent selection and
 their genetic, molecular and physiological bases. The pea aphid
 (Acyrthosiphon pisum) comprises host races specializing on numerous plants
 in the Fabaceae and provides a unique system for examining the early
 stages of diversification along a gradient of genetic and associated
 adaptive divergence. In this study, we examine transcriptome-wide gene
 expression both in response to environment and across pea aphid races
 selected to cover the range of genetic divergence reported in this species
 complex. We identify changes in expression in response to host plant,
 indicating the importance of gene expression in aphid–plant interactions.
 Races can be distinguished on the basis of gene expression, and higher
 numbers of differentially expressed genes are apparent between more
 divergent races; these expression differences between host races may
 result from genetic drift and reproductive isolation and possibly
 divergent selection. Expression differences related to plant adaptation
 include a subset of chemosensory and salivary genes. Genes showing
 expression changes in response to host plant do not make up a large
 portion of between-race expression differences, providing confirmation of
 previous studies’ findings that genes involved in expression differences
 between diverging populations or species are not necessarily those showing
 initial plasticity in the face of environmental change.
description: raw_countScript used to calculate the number of reads mapped to each gene from the Official Gene Set annotation from AphidBase (Legeai et al. 2010), by summing each read that overlaps at least one exon of any particular gene.A. pisum raw countsTranscriptome data from 52 aphid genotypes, reared both on Vicia faba and on their preferred host plant. Illumina sequencing performed using HiSeq2000 using 75 bp paired-end reads (v3 chemistry). Reads mapped to the pea aphid reference genome (IAGC) for each sample separately using TopHat2 (v2.08). The number of reads mapped to each gene from the Official Gene Set annotation from AphidBase (http://aphidbase.com/) was calculated by summing each read that overlaps at least one exon of any particular gene. Read counts reported for 36,401 genes.ApisumRawCounts.csv
DOI: 10.57826/agimo/luoga2
title: MATSim Dresden Base Model Output v0.9

description: See Metadata→Related Publication
DOI: 10.5061/dryad.r44rh
title: Data from: Chemodiversity of dissolved organic matter in the Amazon Basin

description: Regions in the Amazon Basin have been associated with specific
 biogeochemical processes, but a detailed chemical classification of the
 abundant and ubiquitous dissolved organic matter (DOM), beyond specific
 indicator compounds and bulk measurements, has not yet been established.
 We sampled water from different locations in the Negro, Madeira/Jamari and
 Tapajós River areas to characterize the molecular DOM composition and
 distribution. Ultrahigh-resolution Fourier transform ion cyclotron
 resonance mass spectrometry (FT-ICR-MS) combined with excitation emission
 matrix (EEM) fluorescence spectroscopy and parallel factor analysis
 (PARAFAC) revealed a large proportion of ubiquitous DOM but also unique
 area-specific molecular signatures. Unique to the DOM of the Rio Negro
 area was the large abundance of high molecular weight, diverse
 hydrogen-deficient and highly oxidized molecular ions deviating from known
 lignin or tannin compositions, indicating substantial oxidative processing
 of these ultimately plant-derived polyphenols indicative of these black
 waters. In contrast, unique signatures in the Madeira/Jamari area were
 defined by presumably labile sulfur- and nitrogen-containing molecules in
 this white water river system. Waters from the Tapajós main stem did not
 show any substantial unique molecular signatures relative to those present
 in the Rio Madeira and Rio Negro, which implied a lower organic molecular
 complexity in this clear water tributary, even after mixing with the main
 stem of the Amazon River. Beside ubiquitous DOM at average H ∕ C and O ∕ C
 elemental ratios, a distinct and significant unique DOM pool prevailed in
 the black, white and clear water areas that were also highly correlated
 with EEM-PARAFAC components and define the frameworks for primary
 production and other aspects of aquatic life.
description: FT-ICR-MS_dataThis excel file contains all FT-ICR-MS data, including the molecular formula assignments of each m/z peak.EEM-PARAFAC_dataThis excel file contains the true scores (Fmax) of the EEM-PARAFAC model.
DOI: 10.5061/dryad.pp6k4
title: Data from: Co-infections and environmental conditions drive the distributions of blood parasites in wild birds

description: Experimental work increasingly suggests that non-random pathogen
 associations can affect the spread or severity of disease. Yet due to
 difficulties distinguishing and interpreting co-infections, evidence for
 the presence and directionality of pathogen co-occurrences in wildlife is
 rudimentary. We provide empirical evidence for pathogen co-occurrences by
 analysing infection matrices for avian malaria (Haemoproteus and
 Plasmodium spp.) and parasitic filarial nematodes (microfilariae) in wild
 birds (New Caledonian Zosterops spp.). Using visual and genus-specific
 molecular parasite screening, we identified high levels of co-infections
 that would have been missed using PCR alone. Avian malaria lineages were
 assigned to species level using morphological descriptions. We estimated
 parasite co-occurrence probabilities, while accounting for environmental
 predictors, in a hierarchical multivariate logistic regression.
 Co-infections occurred in 36% of infected birds. We identified both
 positively and negatively correlated parasite co-occurrence probabilities
 when accounting for host, habitat and island effects. Two of three
 pairwise avian malaria co-occurrences were strongly negative, despite each
 malaria parasite occurring across all islands and habitats. Birds with
 microfilariae had elevated heterophil to lymphocyte ratios and were all
 co-infected with avian malaria, consistent with evidence that host immune
 modulation by parasitic nematodes facilitates malaria co-infections.
 Importantly, co-occurrence patterns with microfilariae varied in direction
 among avian malaria species; two malaria parasites correlated positively
 but a third correlated negatively with microfilariae. We show that
 wildlife co-infections are frequent, possibly affecting infection rates
 through competition or facilitation. We argue that combining multiple
 diagnostic screening methods with multivariate logistic regression offers
 a platform to disentangle impacts of environmental factors and parasite
 co-occurrences on wildlife disease.
description: Sample sites,
 phylogenetic methods, parasite descriptions and PCR
 methodsThis supplementary file
 contains methods and results relating to laboratory procedures and the
 identification and description of avian malaria
 parasitesClark_et_al_Supplement_Sample
 sites, phylogenetics, descriptions and PCR
 methods.docxR Code for statistical
 analysesThis datafile contains
 an R script and can be used along with the supplied raw data to replicate
 all of the bayesian and logistic regressions used in the
 manuscript.Clark_et_al_Supplement_R Code
 for statistical analyses.docxRaw Data used for
 analysesThis datafile is a csv
 file of individual birds and their infection statuses with each of the
 focal parasites. Also included are the data used as covariates in analyses
 (birds' species identity, sample site, island and habitat
 type).Clark_et_al_Supplement_RawData.csv
DOI: 10.15468/dl.3xw8q5
title: Occurrence Download

description: A dataset containing 77998 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philaenus spumarius"
 ]
}

 The dataset includes 77998 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001432-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1225k
title: Data from: Archipelago-wide survey of Philippine forest dragons (Agamidae: Gonocephalus): multilocus phylogeny uncovers unprecedented levels of genetic diversity in a biodiversity hotspot

description: We utilize robust geographical genetic sampling, a multilocus dataset, and
 coalescent-based species delimitation statistics to provide the first
 phylogenetic inferences of relationships of Philippine Gonocephalus,
 combined with estimates of putative species diversity in this virtually
 unknown island radiation. Our results reveal startling levels of
 undocumented diversity, genetically partitioned at a number of geographic
 levels across the archipelago. In this paper we present the first survey
 of genetic lineage diversity, coupled with an archipelago-wide elucidation
 of geographic structure in a unique archipelago-endemic radiation.
 Philippine Gonocephalus have previously escaped the attention of
 biogeographers, due to taxonomic confusion associated with low numbers of
 preserved specimens in museum collections. With new vouchered material and
 genetic sampling from a comprehensive, archipelago-wide vertebrate
 biodiversity inventory, our findings join many recent studies highlighting
 the unprecedented faunal diversity in one of the world’s most unique
 biodiversity conservation hotspots.
description: StarBEAST_BD_2partitionsSpecies tree analysis file with data split into mitochondrial and nuclear partitionsStarBEAST_Yule_2partitionsSpecies tree analysis control file with data split into mitochondrial and nuclear partitionsGono_7gene.phasedConcatenated alignment of 7 genes, with nuclear data phasedStarBEAST_BD_nuclearSpecies tree analysis control file for nuclear data onlyStarBEAST_Yule_nuclearSpecies tree analysis control file for nuclear data onlyGono_7geneConcatenated alignment of 7 lociBEAST_7geneBayesian phylogenetic inference control file
DOI: 10.5061/dryad.2md79
title: Data from: Heritability of Batrachochytrium dendrobatidis burden and its genetic correlation with development time in a population of Common toad (Bufo spinosus)

description: Despite the important threat that emerging pathogens pose for the
 conservation of biodiversity as well as human health, very little is known
 about the adaptive potential of host species to withstand infections. We
 studied the quantitative genetic architecture responsible for the burden
 of the fungal pathogen Batrachochytrium dendrobatidis in a population of
 common toads in conjunction with other life-history traits (i.e. body size
 and development rate) which may be affected by common selective pressures.
 We found a significant heritable component that is associated with fungal
 burden, which may allow for local adaptation to this pathogen to proceed.
 In addition, the high genetic correlation found between fungal burden and
 development time suggests that both traits have to be taken into account
 in order to assess the adaptive response of host populations to this
 emerging pathogen.
description: dataPedigree, Bd-load,
 Weight, Development time (dates and temperatures) and microsatellite data
 used in our article are shown in different sheets of this excel file. How
 we used each dataset is detailed in materials and methods section of our
 article. Please do not hesitate to contact us to request further
 information.
DOI: 10.5061/dryad.mb0sd
title: Data from: Critically evaluating the theory and performance of Bayesian analyis of macroevolutionary mixtures

description: Bayesian analysis of macroevolutionary mixtures (BAMM) has recently taken
 the study of lineage diversification by storm. BAMM estimates the
 diversification-rate parameters (speciation and extinction) for every
 branch of a study phylogeny and infers the number and location of
 diversification-rate shifts across branches of a tree. Our evaluation of
 BAMM reveals two major theoretical errors: (i) the likelihood function
 (which estimates the model parameters from the data) is incorrect, and
 (ii) the compound Poisson process prior model (which describes the prior
 distribution of diversification-rate shifts across branches) is
 incoherent. Using simulation, we demonstrate that these theoretical issues
 cause statistical pathologies; posterior estimates of the number of
 diversification-rate shifts are strongly influenced by the assumed prior,
 and estimates of diversification-rate parameters are unreliable. Moreover,
 the inability to correctly compute the likelihood or to correctly specify
 the prior for rate-variable trees precludes the use of Bayesian approaches
 for testing hypotheses regarding the number and location of
 diversification-rate shifts using BAMM.
description: supplementary_datahttps://github.com/brianrmoore/BAMM_critiqueThis repo hosts modified BAMM code that we used in our project exploring theoretical issues and statistical problems with BAMM.
DOI: 10.5281/zenodo.18387642
title: DYNAMIC EARTHQUAKE SOURCE INVERSION
DOI: 10.5061/dryad.r9g5c
title: Data from: Interaction between stimulus contrast and pre-saccadic crowding

description: Objects that are briefly flashed around the time of saccades are
 mislocalized. Previously, robust interactions between saccadic perceptual
 distortions and stimulus contrast have been reported. It is also known
 that crowding depends on the contrast of the target and flankers. Here, we
 investigated how stimulus contrast and crowding interact with pre-saccadic
 perception. We asked observers to report the orientation of a tilted Gabor
 presented in the periphery, with or without four flanking vertically
 oriented Gabors. Observers performed the task either following a saccade
 or while maintaining fixation. Contrasts of the target and flankers were
 independently set to either high or low, with equal probability. In both
 the fixation and saccade conditions, the flanked conditions resulted in
 worse discrimination performance—the crowding effect. In the unflanked
 saccade trials, performance significantly decreased with target-to-saccade
 onset for low-contrast targets but not for high-contrast targets. In the
 presence of flankers, impending saccades reduced performance only for
 low-contrast, but not for high-contrast flankers. Interestingly, average
 performance in the fixation and saccade conditions was mostly similar in
 all contrast conditions. Moreover, the magnitude of crowding was
 influenced by saccades only when the target had high contrast and the
 flankers had low contrasts. Overall, our results are consistent with
 modulation of perisaccadic spatial localization by contrast and saccadic
 suppression, but at odds with a recent report of pre-saccadic release of
 crowding.
description: datadata.mat contains a cell
 array called subjects. Each cell represents a different observer. Each
 cell has two structures, fixation and saccade for corresponding
 conditions. Within each structure, there are several fields having the RAW
 as well as processed response data and stimulus conditions in each and
 every trial. Due to the large size, only the saccade events during each
 trial are included in each structure. Below we explain what each field
 represents.PlotsA script for generating
 the figures in the paper.
DOI: 10.5061/dryad.1f663
title: Data from: Interspecific interference competition at the resource patch scale: do large herbivores spatially avoid elephants while accessing water?

description: Animals may anticipate and try to avoid, at some costs, physical
 encounters with other competitors. This may ultimately impact their
 foraging distribution and intake rates. Such cryptic interference
 competition is difficult to measure in the field, and extremely little is
 known at the interspecific level. We tested the hypothesis that smaller
 species avoid larger ones because of potential costs of interference
 competition and hence expected them to segregate from larger competitors
 at the scale of a resource patch. We assessed fine-scale spatial
 segregation patterns between three African herbivore species (zebra Equus
 quagga, kudu Tragelaphus strepsiceros and giraffe Giraffa camelopardalis)
 and a megaherbivore, the African elephant Loxodonta africana, at the scale
 of water resource patches in the semi-arid ecosystem of Hwange National
 Park, Zimbabwe. Nine waterholes were monitored every two weeks during the
 dry season of a drought year, and observational scans of the spatial
 distribution of all herbivores were performed every 15 min. We developed a
 methodological approach to analyse such fine-scale spatial data. Elephants
 increasingly used waterholes as the dry season progressed, as did the
 probability of co-occurrence and agonistic interaction with elephants for
 the three study species. All three species segregated from elephants at
 the beginning of the dry season, suggesting a spatial avoidance of
 elephants and the existence of costs of being close to them. However,
 contrarily to our expectations, herbivores did not segregate from
 elephants the rest of the dry season but tended to increasingly aggregate
 with elephants as the dry season progressed. We discuss these surprising
 results and the existence of a trade-off between avoidance of
 interspecific interference competition and other potential factors such as
 access to quality water, which may have relative associated costs that
 change with the time of the year.
description: Monitoring of the
 spatial location of animals around the waterpoint over the dry season,
 Hwange National Park, Zimbabwe.During the dry season in
 2003 and 2004, for all waterpoints monitored, observation scans of the
 waterhole area were done every 15 minutes between 6 a.m. and 6 p.m. Each
 mammal group was recorded, with species identification, group size and
 group location. It was also recorded if the group was near the
 waterthough.BDD spatial 2003 -
 2004.csv
DOI: 10.34810/data1280
title: Partitura i enregistrament de "Dulce lignum Motete a solo con violines a la Santa Cruz" Joseph Picañol (actiu 1711-1751)

description: Sota el marc del projecte Estudi i Recuperació de Patrimoni Musical, aquest dataset conté dos arxius: 
&lt;br&gt; Transcripció del manuscrit original de Joseph Picañol 
&lt;br&gt; Enregistrament de la peça interpretada per: 
&lt;br&gt;- Eva del Campo, orgue positiu. Orgue positiu construït per Gerrit Klop el
2022.
&lt;br&gt;- Ricart Renart, violí I. Violí construït per Joseph Massaguer el 1753.
&lt;br&gt;- Marta Guillen, violí II. Violí construït per Giuseppe Tenneriello el 2009.
&lt;br&gt;- Guillermo Turina, violoncel. Violoncel construït per Marchal a finals del
segle XVIII.
&lt;br&gt;- Soledad Cardoso (soprano)
DOI: 10.5061/dryad.kt38r
title: Data from: Changes in ectomycorrhizal fungal community composition and declining diversity along a 2-million-year soil chronosequence

description: Ectomycorrhizal (ECM) fungal communities covary with host plant
 communities along soil fertility gradients, yet it is unclear whether this
 reflects changes in host composition, fungal edaphic specialization or
 priority effects during fungal community establishment. We grew two
 co-occurring ECM plant species (to control for host identity) in soils
 collected along a 2-million-year chronosequence representing a strong soil
 fertility gradient and used soil manipulations to disentangle the effects
 of edaphic properties from those due to fungal inoculum. Ectomycorrhizal
 fungal community composition changed and richness declined with increasing
 soil age; these changes were linked to pedogenesis-driven shifts in
 edaphic properties, particularly pH and resin-exchangeable and organic
 phosphorus. However, when differences in inoculum potential or soil
 abiotic properties among soil ages were removed while host identity was
 held constant, differences in ECM fungal communities and richness among
 chronosequence stages disappeared. Our results show that ECM fungal
 communities strongly vary during long-term ecosystem development, even
 within the same hosts. However, these changes could not be attributed to
 short-term fungal edaphic specialization or differences in fungal inoculum
 (i.e. density and composition) alone. Rather, they must reflect
 longer-term ecosystem-level feedback between soil, vegetation and ECM
 fungi during pedogenesis.
description: Glasshouse
 OTUsAll OTUs found in roots
 from the glasshouse experiment. includes non-mycorrhizal, arbuscular
 mycorrhizal and ectomycorrhizalfield samples
 OTUsfield
 OTUs.csv