cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5518/1503
title: Data for "Stable, conductive, adhesive polymer pattern inside a microfluidic chamber for endothelial cell alignment" 

description: The dataset contains all relevant pictures, AFM scans, 4-point measurement data, Raman traces, XPS data for the associated paper entitled 'Stable, conductive, adhesive polymer pattern inside a microfluidic chamber for endothelial cell alignment'. All graphs and tables originated from images, AFM scans or XPS and Raman data can be reproduced following the relevant method section in the associated publication. The dataset is aimed at allowing users to re-analyze the data and reproduce the observations made in the associated publication.
DOI: 10.5061/dryad.c69m7
title: Data from: Life-history plasticity in female threespine stickleback

description: The postglacial adaptive radiation of the threespine stickleback fish
 (Gasterosteus aculeatus) has been widely used to investigate the roles of
 both adaptive evolution and plasticity in behavioral and morphological
 divergence from the ancestral condition represented by present-day oceanic
 stickleback. These phenotypes tend to exhibit high levels of ecotypic
 differentiation. Population divergence in life history has also been well
 studied, but in contrast to behavior and morphology, the extent and
 importance of plasticity has been much less well studied. In this review,
 we summarize what is known about life-history plasticity in female
 threespine stickleback, considering four traits intimately associated with
 reproductive output: age/size at maturation, level of reproductive effort,
 egg size and clutch size. We envision life-history plasticity in an
 iterative, ontogenetic framework, in which females may express plasticity
 repeatedly across each of several time frames. We contrast the results of
 laboratory and field studies because, for most traits, these approaches
 give somewhat different answers. We provide ideas on what the cues might
 be for observed plasticity in each trait and, when possible, we inquire
 about the relative costs and benefits to expressed plasticity. We end with
 an example of how we think plasticity may play out in stickleback life
 history given what we know of plasticity in the ancestor.
description: Baker etal 2015 Heredity
 Dryad dataThe Excel file contains
 9 sheets, each providing the raw data for one of the 9 figures in the
 paper. For multiple-panel figures, data are given separately for each
 panel. For convenience, a small jpg image of each figure is also pasted
 into the sheet with its data.
DOI: 10.5061/dryad.p834j
title: Data from: Affinity for natal environments by dispersers impacts reproduction and explains geographic structure of a highly mobile bird

description: Understanding dispersal and habitat selection behaviours is central to
 many problems in ecology, evolution and conservation. One factor often
 hypothesized to influence habitat selection by dispersers is the natal
 environment experienced by juveniles. Nonetheless, evidence for the effect
 of natal environment on dispersing, wild vertebrates remains limited.
 Using 18 years of nesting and mark–resight data across an entire North
 American geographical range of an endangered bird, the snail kite
 (Rostrhamus sociabilis), we tested for natal effects on breeding-site
 selection by dispersers and its consequences for reproductive success and
 population structure. Dispersing snail kites were more likely to nest in
 wetlands of the same habitat type (lacustrine or palustrine) as their
 natal wetland, independent of dispersal distance, but this preference
 declined with age and if individuals were born during droughts.
 Importantly, dispersing kites that bred in natal-like habitats had lower
 nest success and productivity than kites that did not. These behaviours
 help explain recently described population connectivity and spatial
 structure across their geographical range and reveal that assortative
 breeding is occurring, where birds are more likely to breed with
 individuals born in the same wetland type as their natal habitat. Natal
 environments can thus have long-term and large-scale effects on
 populations in nature, even in highly mobile animals.
description: conditional_logit_data
 for Dryad_FINALmodularity_data for
 Dryad_FINALdata to assess drivers
 of modularitynests_success_data for
 Dryaddata to compare nest
 success between individuals who nest in habitat types similar to natal
 habitat type versus those that don'tnest_fledge_data for
 Dryad_FINALmaladaptive habitat
 selection and explains geographic structure of a highly mobile
 bird
DOI: 10.5061/dryad.8p6m0
title: Data from: The species versus subspecies conundrum: quantitative delimitation from integrating multiple data types within a single Bayesian approach in Hercules beetles

description: With the recent attention and focus on quantitative methods for species
 delimitation, an overlooked but equally important issue regards what has
 actually been delimited. This study investigates the apparent
 arbitrariness of some taxonomic distinctions, and in particular how
 species and subspecies are assigned. Specifically, we use a recently
 developed Bayesian model-based approach to show that in the Hercules
 beetles (genus Dynastes) there is no statistical difference in the
 probability that putative taxa represent different species, irrespective
 of whether they were given species or subspecies designations. By
 considering multiple data types, as opposed to relying exclusively on
 genetic data alone, we also show that both previously recognized species
 and subspecies represent a variety of points along the speciation spectrum
 (i.e., previously recognized species are not systematically further along
 the continuum than subspecies). For example, based on evolutionary models
 of divergence, some taxa are statistically distinguishable on more than
 one axis of differentiation (e.g., along both phenotypic and genetic
 dimensions), whereas other taxa can only be delimited statistically from a
 single data type. Because both phenotypic and genetic data are analyzed in
 a common Bayesian framework, our study provides a framework for
 investigating whether disagreements in species boundaries among data types
 reflect (i) actual discordance with the actual history of lineage
 splitting, or instead (ii) differences among data types in the amount of
 time required for differentiation to become apparent among the delimited
 taxa. We discuss what the answers to these questions imply about what
 characters are used to delimit species, as well as the diverse processes
 involved in the origin and maintenance of species boundaries. With this in
 mind, we then reflect more generally on how quantitative methods for
 species delimitation are used to assign taxonomic status.
description: SuplementaryFilesSupplementary figures and tablesHuangEtKnowles2015SysBioDynastesData(1) Aligned sequence data in Nexus format. (2) Beetle images from collected specimens and book scans. (3) input molecular and phenotypic data for bpp and ibpp analyses. (4) Collection records. (5) *BEAST species trees
DOI: 10.5061/dryad.9143
title: Data from: Adaptive responses and disruptive effects: how major wildfire influences kinship-based social interactions in a forest marsupial

description: Environmental disturbance is predicted to play a key role in the evolution
 of animal social behaviour. This is because disturbance affects key
 factors underlying social systems, such as demography, resource
 availability and genetic structure. However, because natural disturbances
 are unpredictable there is little information on their effects on social
 behaviour in wild populations. Here, we investigated how a major wildfire
 affected cooperation (sharing of hollow trees) by a hollow-dependent
 marsupial. We based two alternative social predictions on the impacts of
 fire on population density, genetic structure and resources. We predicted
 an adaptive social response from previous work showing that kin selection
 in den-sharing develops as competition for den resources increases. Thus,
 kin selection should occur in burnt areas because the fire caused the loss
 of 80% of hollow-bearing trees, but no detectable mortality.
 Alternatively, fire may have a disruptive social effect, whereby post-fire
 home range-shifts ‘neutralise’ fine-scale genetic structure, thereby
 removing opportunities for kin selection between neighbours. Both
 predictions occurred: the disruptive social effect in burnt habitat and
 the adaptive social response in adjacent unburnt habitat. The latter
 followed a massive demographic influx to unburnt ‘refuge’ habitat that
 increased competition for dens, leading to a density-related kin selection
 response. Our results show remarkable short-term plasticity of animal
 social behaviour and demonstrate how the social effects of disturbance
 extend into undisturbed habitat due to landscape-scale demographic shifts.
 We predicted long-term changes in kinship-based cooperative behaviour
 resulting from the genetic and resource impacts of forecast changes to
 fire regimes in these forests.
description: Individual_infoBasic information on the individual animals studiedInteraction_dataInteractions_per_dayRadiotracking_records
DOI: 10.5061/dryad.j62n1
title: Data from: NF-κB oscillations translate into functionally related patterns of gene expression

description: Several transcription factors (TFs) oscillate, periodically relocating
 between the cytoplasm and the nucleus. NF-κB, which plays key roles in
 inflammation and cancer, displays oscillations whose biological advantage
 remains unclear. Recent work indicated that NF-κB displays sustained
 oscillations that can be entrained, that is, reach a persistent
 synchronized state through small periodic perturbations. We show here that
 for our GFP-p65 knock-in cells NF-κB behaves as a damped oscillator able
 to synchronize to a variety of periodic external perturbations with no
 memory. We imposed synchronous dynamics to prove that transcription of
 NF-κB-controlled genes also oscillates, but mature transcript levels
 follow three distinct patterns. Two sets of transcripts accumulate fast or
 slowly, respectively. Another set, comprising chemokine and chemokine
 receptor mRNAs, oscillates and resets at each new stimulus, with no memory
 of the past. We propose that TF oscillatory dynamics is a means of
 segmenting time to provide renewing opportunity windows for decision.
description: Microarray data; chronic
 and pulsed stimulations of TNFalphaGFP-p65 MEFs were either
 chronically or periodically stimulated (90' and 180' forcing
 periods) with TNF-alpha. RNA samples were extracted at selected timepoints
 using the Illustra RNAspin Mini kit (GE Healthcare). Following extraction,
 RIN (RNA Integrity Number) was &gt;9 (BioAnalyser, Agilent RNA Nano Kit).
 RNA samples (500 ng) were reverse transcribed with the Illumina TotalPrep
 RNA Amplification Kit (Ambion) and copy RNA (cRNA) was generated with 14
 hour in vitro transcription reactions and checked at the BioAnalyser.
 Washing, staining, and hybridization were performed according to standard
 Illumina protocols. cRNA samples were then hybridized to Illumina BeadChip
 Array MouseRefSeq-8 v2. BeadChips were scanned with BeadArray™ Reader in
 channel 2. The .zip file contains the following files: Quality control
 files: "Zambrano_90MIN_ControlProbe.csv",
 "Zambrano_180MIN_ControlProbe.csv",
 "Zambrano_Chronic_ControlProbe.csv". Raw data files:
 "ZambranoMicroarray_90MIN.csv",
 "ZambranoMicroarray_180MIN.csv",
 "ZambranoMicroarray_Chronic.csv".ZambranoRawMicroarrayData.zip
DOI: 10.5061/dryad.j64j0
title: Data from: Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and functional diversity on rain forest assembly

description: Aim: We take advantage of next generation sequencing-based technology to
 assess how landscape-level dynamics, biogeographical history and
 functional factors shape the distribution of genetic diversity in rain
 forest trees. To achieve this, we explore chloroplast genomic diversity
 and divergence patterns across multiple, co-distributed species from three
 major centres of rain forest diversity. Location: Subtropical rain forests
 in south-eastern Australia: Nightcap–Border Ranges, Dorrigo and Washpool.
 Methods: We assembled chloroplast genomic data from whole-genome shotgun
 libraries for 71 species collected across three major centres of rain
 forest diversity. Chloroplast single nucleotide polymorphisms were used to
 measure genetic variation within and between multiple populations, species
 and locations, and we used this information to identify patterns related
 to landscape-level processes, biogeographical origins and functional
 characteristics. Results: We identified Nightcap–Border Ranges and Dorrigo
 as containing multiple refugia and Washpool as primarily a recolonized
 area. We found that rapidly expanding lineages of Indo-Malesian origin
 exhibit significantly lower levels of genetic diversity than Gondwanan
 lineages with longer local histories. Functional traits related to
 persistence and dispersal were the most important in regulating the
 distribution of genetic diversity. Main conclusions: The distribution and
 assembly of species reflect interactions and competition between different
 floristic elements at different stages of continental occupation.
 Additionally, given the multiple evolutionary origins and histories of the
 Australian rain forest flora, it is important to avoid treating rain
 forest communities as single management units.
description: Chloroplast DNA Fasta
 alignments of Australian Rainforest plant speciesThis data consists of 70
 fasta files. The name of each file is the species name and within each
 file there are up to three aligned fasta sequences. Each fasta sequence is
 the consensus sequence after mapping a whole genome shotgun sequencing
 library to a chloroplast reference. The reference were made from
 concatenated de novo contigs (see manuscript for details). Each shotgun
 sequencing library consists of DNA of 6 pooled individuals. Each library
 represents a particular geographic location. Polymorphisms within a
 library (or geographic site) are indicated with the use of a IUPAC
 nucleotide code. Please contact the authors if you would like to use this
 data.where
 did all the trees come from fasta.zip
DOI: 10.5061/dryad.mk4f8
title: Data from: Automated leaf physiognomic character identification from digital images

description: Research into the relationship between leaf form and climate over the last
 century has revealed that, in many species, the sizes and shapes of leaf
 characters exhibit highly structured and predictable patterns of variation
 in response to the local climate. Several procedures have been developed
 that quantify covariation between the relative abundance of plant
 character states and the states of climate variables as a means of
 estimating paleoclimate parameters. One of the most widely used of these
 is the Climate Leaf Analysis Multivariate Program (CLAMP). The
 consistency, accuracy and reliability with which leaf characters can be
 identified and assigned to CLAMP character-state categories is critical to
 the accuracy of all CLAMP analyses. Here we report results of a series of
 performance tests for an image-based, fully automated at the point of use,
 leaf character scoring system that can be used to generate CLAMP leaf
 character state data for: leaf bases (acute, cordate and round), leaf
 apices (acute, attenuate), leaf shapes (ovate, elliptical and obovate),
 leaf lobing (unlobed, lobed), and leaf aspect ratios (length/width). This
 image-based system returned jackknifed identification accuracy ratios of
 between 87% and 100%. These results demonstrate that automated image-based
 identification systems have the potential to improve paleoenvironmental
 inferences via the provision of accurate, consistent and rapid CLAMP
 leaf-character identifications. More generally, our results provide strong
 support for the feasibility of using fully automated, image-based
 morphometric procedures to address the general problem of morphological
 character-state identification.
description: MacLeod & Steart
 Supplementary FilesImages, datafiles,
 results files, and software code listings for MacLeod, N., and Steart, D.,
 2015, Automated leaf physiognomic character identification from digital
 images: Paleobiology, vol. 41, No. 4.
DOI: 10.15468/dl.xqxy4x
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dolichotis patagonum)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 5000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 204 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001643-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvmgmn
title: Occurrence Download

description: A dataset containing 2819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Crataegus altaica, Crataegus songarica, Crataegus songarica, Crataegus songarica, Crataegus pinnatifida songarica, Crataegus altaica, Crataegus altaica, Crataegus altaica, Crataegus altaica latifolia, Crataegus altaica villosa, Crataegus altaica incisa, Crataegus altaica fusca, Crataegus sanguinea altaica, Crataegus sanguinea altaica, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea, Crataegus sanguinea inermis, Crataegus remotilobata, Crataegus remotilobata)"
 ]
}

 The dataset includes 2819 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001642-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wy8wmv
title: Occurrence Download

description: A dataset containing 4994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.6792 48.39082,2.67784 48.38823,2.68837 48.38678,2.68952 48.38987,2.6792 48.39082))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4994 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001644-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5878/001486
title: The Regional Skåne SOM Survey 2011
title: SOM-undersökningen i Skåne 2011
title: Syd-SOM 2011

description: This is the fifth SOM survey conducted in the region of Skåne. The questionnaire was divided into seven subject fields: news and media; politics, society and democracy; society and service; media use; activities, interests and values; working life; and background information.

Purpose:
Study attitudes and behaviour linked to local and regional issues.
description: Detta är den femte SOM-undersökning som genomförts i Skåne. Den första undersökningen genomfördes 2001 i Malmöregionen (A-region 28 samt Eslöv). De senare undersökningarna har genomförts i hela Region Skåne.

Frågeformuläret består av sju sammanhållna frågeområden: nyheter och medier; politik, samhälle och demokrati; samhälle och service; medieanvändning; aktiviteter, intressen och värderingar; arbetsliv; samt bakgrundsfrågor.

Syfte:
Studera attityder och beteenden som är knutna till lokala och regionala frågor och företeelser.
DOI: 10.5878/000500
title: The Regional Skåne SOM Survey 2011
title: SOM-undersökningen i Skåne 2011
title: Syd-SOM 2011

description: This is the fifth SOM survey conducted in the region of Skåne. The questionnaire was divided into seven subject fields: news and media; politics, society and democracy; society and service; media use; activities, interests and values; working life; and background information.

Purpose:
Study attitudes and behaviour linked to local and regional issues.
description: Detta är den femte SOM-undersökning som genomförts i Skåne. Den första undersökningen genomfördes 2001 i Malmöregionen (A-region 28 samt Eslöv). De senare undersökningarna har genomförts i hela Region Skåne.

Frågeformuläret består av sju sammanhållna frågeområden: nyheter och medier; politik, samhälle och demokrati; samhälle och service; medieanvändning; aktiviteter, intressen och värderingar; arbetsliv; samt bakgrundsfrågor.

Syfte:
Studera attityder och beteenden som är knutna till lokala och regionala frågor och företeelser.
DOI: 10.5061/dryad.47880
title: Data from: Drosophila melanogaster larvae make nutritional choices that minimize developmental time

description: Organisms from slime moulds to humans carefully regulate their
 macronutrient intake to optimize a wide range of life history characters
 including survival, stress resistance, and reproductive success. However,
 life history characters often differ in their response to nutrition,
 forcing organisms to make foraging decisions while balancing the
 trade-offs between these effects. To date, we have a limited understanding
 of how the nutritional environment shapes the relationship between life
 history characters and foraging decisions. To gain insight into the
 problem, we used a geometric framework for nutrition to assess how the
 protein and carbohydrate content of the larval diet affected key life
 history traits in the fruit fly, Drosophila melanogaster. In no-choice
 assays, survival from egg to pupae, female and male body size, and
 ovariole number – a proxy for female fecundity – were maximized at the
 highest protein to carbohydrate (P:C) ratio (1.5:1). In contrast,
 development time was minimized at intermediate P:C ratios, around 1:2.
 Next, we subjected larvae to two-choice tests to determine how they
 regulated their protein and carbohydrate intake in relation to these life
 history traits. Our results show that larvae targeted their consumption to
 P:C ratios that minimized development time. Finally, we examined whether
 adult females also chose to lay their eggs in the P:C ratios that
 minimized developmental time. Using a three-choice assay, we found that
 adult females preferentially laid their eggs in food P:C ratios that were
 suboptimal for all larval life history traits. Our results demonstrate
 that D. melanogaster larvae make foraging decisions that trade-off
 developmental time with body size, ovariole number, and survival. In
 addition, adult females make oviposition decisions that do not appear to
 benefit the larvae. We propose that these decisions may reflect the living
 nature of the larval nutritional environment in rotting fruit. These
 studies illustrate the interaction between the nutritional environment,
 life history traits, and foraging choices in D. melanogaster, and lend
 insight into the ecology of their foraging decisions.
description: Response
 SurfacesData and scripts for
 generating the response surfacesBehaviour
 DataData and scripts for
 analysis of larval macronutrient intake and female oviposition
 choiceBehaviour.zipL3 Development TimeData and scripts for the effects of larval diet on third instar development time.