cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5525/gla.researchdata.2091
title: Comparing Membranes for Proton Exchange Membrane Water Electrolysis: Performance, Stability and Hydrogen Crossover

description: The supply of Nafion and Aquivion proton exchange membranes is currently severely constrained, prompting a search for alternatives. In this work, a new commercial proton exchange membrane (PFSA D170-U) was evaluated and compared with two other membranes: Nafion™ N117 and Aquivion® E98-15S. The performance, stability over 100 h, and H2 crossover characteristics of these three membranes were investigated in a flow cell electrolyser by testing each membrane type in triplicate using a fresh sample of membrane for each experimental run. At 60 °C, the three membranes showed an average performance of 1 A cm–2 at 2.0 V and an average degradation rate of 1.2 mV h–1 after stability tests for 100 h at a fixed current density of 1.0 A cm–2. The three membranes showed similar metrics, suggesting that PFSA D170-U is a promising proton exchange membrane alternative to Nafion and Aquivion membranes for research purposes. Additionally, the physical, morphological, structural, thermal and mechanical properties of the PFSA D170-U membrane were examined.
DOI: 10.5281/zenodo.15638130
title: The Pseudomonas aeruginosa sirB2 gene is a fitness determinant of anaerobic growth and its inactivation affects virulence and rugose small colony variants emergence

description: The archive contains a collection of raw data and analysis scripts to replicate part of the results contained in the work "The Pseudomonas aeruginosa sirB2 gene is a fitness determinant of anaerobic growth and its inactivation affects virulence and rugose small colony variants emergence" by Valerio Baldelli, Stacy Julisa Carrasco Aliaga, Claudia Antonella Colque, Francesca Mazzola, Srikanth Ravishankar, Helle Krogh Johansen, Søren Molin, Nadia Raffaelli, Moira Paroni, Paolo Landini and Elio Rossi
DOI: 10.5281/zenodo.17628415
title: The Pseudomonas aeruginosa sirB2 gene is a fitness determinant of anaerobic growth and its inactivation affects virulence and rugose small colony variants emergence

description: The archive contains a collection of raw data and analysis scripts to replicate part of the results contained in the work "The Pseudomonas aeruginosa sirB2 gene is a fitness determinant of anaerobic growth and its inactivation affects virulence and rugose small colony variants emergence" by Valerio Baldelli, Stacy Julisa Carrasco Aliaga, Claudia Antonella Colque, Francesca Mazzola, Srikanth Ravishankar, Helle Krogh Johansen, Søren Molin, Nadia Raffaelli, Moira Paroni, Paolo Landini and Elio Rossi
DOI: 10.15468/dl.drmhc9
title: Occurrence Download

description: A dataset containing 707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhynchophorus ferrugineus",
 "Year 2025-2025"
 ]
}

 The dataset includes 707 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038766-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30530453
title: Transmir 3.0 mmu cytagetlinker linkset

description: This linkset can be used in the CyTargetLinker app within Cytoscape to extend interactions between transcription factors and microRNAs. The linkset contains only literature reviewed interactions from mouse data.
DOI: 10.6084/m9.figshare.30530453.v1
title: Transmir_v3_mmu_literature linkset

description: This linkset can be used in the CyTargetLinker app within Cytoscape to extend interactions between transcription factors and microRNAs.
DOI: 10.6084/m9.figshare.30530453.v2
title: Transmir 3.0 mmu cytagetlinker linkset

description: This linkset can be used in the CyTargetLinker app within Cytoscape to extend interactions between transcription factors and microRNAs. The linkset contains only literature reviewed interactions from mouse data.
DOI: 10.6084/m9.figshare.30455483
title: Transmir 3.0 hsa Cytargetlinker linkset

description: This is a linkset originating from Transmir 3.0. The linkset enables users to automatically extend a network with MicroRNA targeting interactions from different gene identifiers. The linkset contains only literature reviewed interactions from human data.
DOI: 10.6084/m9.figshare.30455483.v1
title: Transmir 3.0 Cytargetlinker linkset

description: This is a linkset originating from Transmir 3.0. The linkset enables users to automatically extend a network with MicroRNA targeting interactions.
DOI: 10.6084/m9.figshare.30455483.v2
title: Transmir 3.0 hsa Cytargetlinker linkset

description: This is a linkset originating from Transmir 3.0. The linkset enables users to automatically extend a network with MicroRNA targeting interactions from different gene identifiers. The linkset contains only literature reviewed interactions from human data.
DOI: 10.15468/dl.jfs99h
title: Occurrence Download

description: A dataset containing 1933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is August",
 "OccurrenceStatus is Present",
 "TaxonKey is Ciconia nigra",
 "Year 2025-2025"
 ]
}

 The dataset includes 1933 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038768-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17568966
title: Warming fluctuations strengthen the photo-phagotrophic coupling in mixoplanktonic protists
DOI: 10.5281/zenodo.17608174
title: Colibactin production and resistance in 1 991 hybrid assemblies from the NORM collection

description: Files used in generating a species-wide phylogeny from the panaroo core gene alignment for 1 991 Escherichia coli hybrid assemblies from the NORM collection.

Data

Isolation, sequencing, and assembly are described in the following two studies:

[1] Gladstone et al. "Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study". The Lancet Microbe (2021). doi: 10.1016/S2666-5247(21)00031-8.

[2] Arredondo-Alonso et al. "Plasmid-driven strategies for clone success in Escherichia coli". Nature communications (2025). doi: 10.1038/s41467-025-57940-1.

Sequencing data is available from the European Nucleotide Archive under accession numbers PRJEB45354 and PRJEB57633.

Pangenome inference

Pangenome inference from the annotations was performed using panaroo v1.5.2 (GitHub: gtonkinhill/panaroo) with the “--clean-mode strict” and “--remove-invalid-genes” options:

[3] Tonkin-Hill et al. "Producing polished prokaryotic pangenomes with the Panaroo pipeline." Genome Biology (2020). doi: 10.1186/s13059-020-02090-4.

Output files from panaroo are available in a separate Zenodo upload: doi: 10.5281/zenodo.17521040.

Phylogenetic inference

The phylogenetic tree was constructed using VeryFastTree [4] v4.0.0 72,73 using a Gamma+GTR+CAT model with 20 categories, no bootstrap support values, the -fastest option, and 32-bit floating point precision.

[4] Piñeiro, C., Abuín, J. M. & Pichel, J. C. "Very Fast Tree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies." Bioinformatics (2020). doi: 10.1093/bioinformatics/btaa582.
DOI: 10.5281/zenodo.17608175
title: Colibactin production and resistance in 1 991 hybrid assemblies from the NORM collection

description: Files used in generating a species-wide phylogeny from the panaroo core gene alignment for 1 991 Escherichia coli hybrid assemblies from the NORM collection.

Data

Isolation, sequencing, and assembly are described in the following two studies:

[1] Gladstone et al. "Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study". The Lancet Microbe (2021). doi: 10.1016/S2666-5247(21)00031-8.

[2] Arredondo-Alonso et al. "Plasmid-driven strategies for clone success in Escherichia coli". Nature communications (2025). doi: 10.1038/s41467-025-57940-1.

Sequencing data is available from the European Nucleotide Archive under accession numbers PRJEB45354 and PRJEB57633.

Pangenome inference

Pangenome inference from the annotations was performed using panaroo v1.5.2 (GitHub: gtonkinhill/panaroo) with the “--clean-mode strict” and “--remove-invalid-genes” options:

[3] Tonkin-Hill et al. "Producing polished prokaryotic pangenomes with the Panaroo pipeline." Genome Biology (2020). doi: 10.1186/s13059-020-02090-4.

Output files from panaroo are available in a separate Zenodo upload: doi: 10.5281/zenodo.17521040.

Phylogenetic inference

The phylogenetic tree was constructed using VeryFastTree [4] v4.0.0 72,73 using a Gamma+GTR+CAT model with 20 categories, no bootstrap support values, the -fastest option, and 32-bit floating point precision.

[4] Piñeiro, C., Abuín, J. M. & Pichel, J. C. "Very Fast Tree: speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies." Bioinformatics (2020). doi: 10.1093/bioinformatics/btaa582.
DOI: 10.15468/dl.pu7n7y
title: Occurrence Download

description: A dataset containing 34405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2014",
 "Geometry POLYGON((-25 70, 40 70, 40 35, -25 35, -25 70))"
 ]
}

 The dataset includes 34405 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038767-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17526947
title: CalWildFire

description: Wildfires pose a constant threat to ecosystems and human safety, especially in Mediterranean regions, where increasing temperatures and prolonged droughts intensify conditions for ignition and spread. Accurate risk assessment and forecasting depend on datasets that seamlessly integrate meteorological, environmental, and human-related factors with high spatial and temporal resolution. 

The CalWildFire dataset addresses this need by offering a comprehensive collection of wildfire and meteorological data for the Calabria region in southern Italy, compiled from in situ ground-based observations managed by the regional environmental agency. CalWildFire provides 11 years (2008–2018) of daily, validated in situ meteorological measurements and ground-based burned-area records.

The repository contains the compressed version of the CalWildFire dataset. It features four primary directories: burned, never_burned, burned_negatives, and burned_one_day_before. It also includes two JSON files with the computed statistics, with and without the samples from the set burned_one_day_before.
DOI: 10.5281/zenodo.17552887
title: CalWildFire

description: Wildfires pose a constant threat to ecosystems and human safety, especially in Mediterranean regions, where increasing temperatures and prolonged droughts intensify conditions for ignition and spread. Accurate risk assessment and forecasting depend on datasets that seamlessly integrate meteorological, environmental, and human-related factors with high spatial and temporal resolution. 

The CalWildFire dataset addresses this need by offering a comprehensive collection of wildfire and meteorological data for the Calabria region in southern Italy, compiled from in situ ground-based observations managed by the regional environmental agency. CalWildFire provides 11 years (2008–2018) of daily, validated in situ meteorological measurements and ground-based burned-area records.

The repository contains the compressed version of the CalWildFire dataset. It features four primary directories: burned, never_burned, burned_negatives, and burned_one_day_before. It also includes two JSON files with the computed statistics, with and without the samples from the set burned_one_day_before.
DOI: 10.15468/dl.y7s6ry
title: Occurrence Download

description: A dataset listing the 24 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-2.97154 55.67080,-2.06181 55.67080,-2.06181 56.03454,-2.97154 56.03454,-2.97154 55.67080))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix"
 ]
}

 The dataset's 24 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038759-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3h8jgy
title: Occurrence Download

description: A dataset containing 2312059032 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aves"
 ]
}

 The dataset includes 2312059032 records from 15963 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038656-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4n99m
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinixys homeana"
 ]
}

 The dataset includes 378 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029045-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48sc2m
title: Occurrence Download

description: A dataset containing 145327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "StateProvince is Louisiana",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 145327 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012140-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ceww64
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-87.95937 -4.86696,-51.78175 -4.86696,-51.78175 9.62873,-87.95937 9.62873,-87.95937 -4.86696))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chironius exoletus (Linnaeus, 1758)"
 ]
}

 The dataset includes 112 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012146-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11863085
title: BOS Kemdikbud
DOI: 10.15468/dl.kzavfr
title: Occurrence Download

description: A dataset containing 734 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cicindela obsoleta Say, 1823",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 734 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005607-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbfp6f
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lodoicea Comm. ex DC."
 ]
}

 The dataset includes 205 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005608-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28451879
title: Under someone else’s name: New combinations and an exquisite new species of Lucuma Molina (Sapotaceae)

description: Dataset Lucuma new species molecular phylogeny
DOI: 10.15468/dl.h7mv98
title: Occurrence Download

description: A dataset containing 5557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.89728 4.25999,-73.80653 4.26471,-73.81761 4.37989,-73.90345 4.37359,-73.89728 4.25999))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5557 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005609-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15460056
title: Collaboration Data on Flemish Biotechnology Start-Ups (2025)

description: This dataset contains structured data on the public partnerships of nearly all Flemish biotechnology start-ups, collected between February and May 2025. It was compiled to support a Social Network Analysis (SNA) conducted as part of a Master’s thesis at KU Leuven called "Mapping Innovation Networks of Biotechnology Start-Ups in Flanders With In-Depth Case Studies in Leuven: Impact of Network Positioning on Success". The data captures collaborative relationships of Flemish biotechnology start-ups with various actors, including universities, research institutions, incubators, investors, and other biotech companies.
DOI: 10.5281/zenodo.15460057
title: Collaboration Data on Flemish Biotechnology Start-Ups (2025)

description: This dataset contains structured data on the public partnerships of nearly all Flemish biotechnology start-ups, collected between February and May 2025. It was compiled to support a Social Network Analysis (SNA) conducted as part of a Master’s thesis at KU Leuven called "Mapping Innovation Networks of Biotechnology Start-Ups in Flanders With In-Depth Case Studies in Leuven: Impact of Network Positioning on Success". The data captures collaborative relationships of Flemish biotechnology start-ups with various actors, including universities, research institutions, incubators, investors, and other biotech companies.
DOI: 10.15468/dl.qg2yvq
title: Occurrence Download

description: A dataset containing 1585786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phylloscopus trochilus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 1585786 records from 605 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005599-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s984je
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Calosoma wilcoxi LeConte, 1847",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 371 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmheyd
title: Occurrence Download

description: A dataset containing 2625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Loeflingia L."
 ]
}

 The dataset includes 2625 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11863106
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.vcrgc9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "GadmGid is TUR.11_1",
 "TaxonKey is Caretta caretta (Linnaeus, 1758)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zg5j4
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chlaenius pusillus Say, 1823",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 64 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005614-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7nab4
title: Occurrence Download

description: A dataset containing 7490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Loeselia L."
 ]
}

 The dataset includes 7490 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005616-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6y68aj
title: Occurrence Download

description: A dataset containing 3484460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0"
 ]
}

 The dataset includes 3484460 records from 395 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005596-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.