cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.95777
title: Research data supporting "A chemical engineering critique of the ‘Eye on a Chip’ device for assessing emulsification of silicone oil tamponades"

description: The data set contains the information presented in Figure 6 of the paper, which shows the spin up and spin down times recored for saline solutions in the Eye-on-a-Chip device, for rotational velocities of 5 to 17 radians per second. Also shown in the figure are the viscous time scale and the Ekman timescale for the experimental conditions. The experimental values were obtained by analysis of videos. The saline solutions contained small, almost-neutrally buoyant particles which allowed the local velocity to be determined. Examples of the videos are provided as Supplementary Information for the journal article. The journal article will be published Open Access, and further information about data collection and data processing is given there. The data are in a Microsoft Excel worksheet (.xlsx).
DOI: 10.5281/zenodo.14441637
title: rawdataACEM
DOI: 10.5281/zenodo.14441638
title: rawdataACEM
DOI: 10.17863/cam.58727
title: Research data supporting "Long-term basement heave in over-consolidated clay"

description: This dataset accompanies the PhD thesis "Long-term basement heave in over-consolidated clay". There are 13 zip and 7z archive files, which contain experimental and computational results from the basement heave research project. Eight of these archive files, each prefixed "Centrifuge*", contain experimental (geotechnical centrifuge modelling) data. Each zip archive contains data from one experiment, organised into one or more folders of quantitative experimental data and the Matlab .m scripts required to process them; the data are stored in comma separated value (CSV) files, with some data duplicated in XLSX spreadsheets and Matlab .mat databases for convenience. These are complemented by XLS / XLSX workbooks that tabulate and calculate salient data and observations taken manually during experiment preparation and operation. "Horseferry Road case study.zip" provides further details on the heave monitoring data, the site investigation data, and the calculations presented in the Horseferry Road Basement heave monitoring case study. The original data and scans are provided by the courtesy of Arup Geotechnics and Laing O'Rourke who kindly agreed to make this set of data publicly available for the benefit of industry and society. The four 7z archive files, each prefixed "Plaxis*"， contain computational (finite element modelling) data generated using Plaxis 2D 2017-01. Among these, "Plaxis HSS constitutive parameter calibration.7z" is a series of simulations of the same consolidated undrained triaxial compression tests and oedometer swelling tests using different candidate HSS (small-strain hardening) soil constitutive model parameter sets, with the aim of calibrating the HSS model. "Plaxis DYC-04 (flexi) sensitivity analysis runs.7z" and "Plaxis DYC-05 (stiff) sensitivity analysis runs.7z" contain data from 62 simulations that attempted to match two centrifuge tests, with the aim of calibrating the model parameters in soil-structure interaction simulations. Computational simulations matching the equivalent prototypes of each centrifuge test and several additional prototypes were performed using the optimised parameters, and the data are provided in "Plaxis reported results DYC-02 to 07 and variations.7z". XLSX spreadsheets of salient results from each simulation are included in the respective 7z archive. An additional zip archive file, "Basement heave Plaxis results spreadsheets.zip", duplicates all XLSX spreadsheets reporting salient results of the Plaxis simulations. This zip is included for the benefit of data reusers who do not have access to Plaxis or otherwise do not intend to access the raw Plaxis simulation results. The data in this zip are sufficient to reproduce all the comparisons between computational simulation and centrifuge experiment results reported in the PhD thesis.
DOI: 10.17863/cam.38334
title: Research Data supporting "Quantifying Chemical Structure and Machine-Learned Atomic Energies in Amorphous and Liquid Silicon"

description: This file contains additional data supporting the above-mentioned publication. Coordinate files from molecular dynamics simulations and structural relaxations are provided, alongside original data for local energies, all as discussed in the publication. A detailed description may be found in the README.txt file within the archive.
DOI: 10.15468/dl.ntb497
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crocus sativus L."
 ]
}

 The dataset includes 614 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033222-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.36668
title: Research data supporting "Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of BRC1"

description: ZIP-file containing the numerical data underlying the Figures and Supporting Figures. Each Figure/Supporting Figure is labeled according to the the numbering in the publication and consists of a .csv file containing the numerical data and an accompanying R-script that was used to generate the relevant graph. The R-scripts contain further information on when the experiment was conducted and also contain the statistical analysis used to support the results in the article.
DOI: 10.17863/cam.47721
title: DFT, Molecular Mechanics and Raw NMR Data for: DP4-AI Automated NMR Data Analysis Straight from Spectrometer to Structure

description: Archive of DFT and Molecular Mechanics Data for DP4-AI Straight from Spectrometer to Structure. All of the files can be opened in any text editor. The conformational search output structures can be visualised in Schrodinger Maestro. Gaussian output structures can be viewed in Avogadro, jmol and in most other molecular viewers/editors. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ This archive is separated into folders corresponding to each molecule (X) in the study. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ For each molecule there are three sets of calculations corresponding to the three levels of theory described in the paper. These are separated into subfolders labelled: MM - molecular mechanics geometries, mPW1PW91 NMR Calculations Opt - DFT optimised geometries, mPW1PW91 NMR Calculations Opt_E - DFT optimised geometries, mPW1PW91 NMR Calculations, M062X Single point energies ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Within these subfolders the X_Y.sdf files correspond to the input molecular geometries for each diastereomer (Y) of the molecule (X), Y = 1 always corresponds to the correct diastereomer. The X_Y.mae files describe the macromodel conformational search for diastereomer. The handwritten NMR description is stored in the file XNMR The raw proton and carbon NMR files are stored in the Proton and Carbon subfolders of the NMR_folder directory at this level ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ The DFT calculation files are also then organised into subsubfolders nmr - NMR DFT calculations opt – DFT geometry optimisation calculations (Opt and Opt_E only) e – DFT M062X single point energy caculations (Opt_E only) These files are in the Gaussian input and output file format. The input (.com) file names all have the form X_YginpZ.com this is read as: molecule X, diastereomer Y, Gaussian input, conformer Z. For each (.com) input file there is a corresponding (.out) output file with the same file name. Within each set of calculations (MM, Opt or Opt_E) for each molecule the diastereomer and conformer labels are self consistent.
DOI: 10.6084/m9.figshare.c.3624017_d1
title: Additional file 10: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: List of core set of genes associated with all models of parturition. (XLS 258 kb)
DOI: 10.6084/m9.figshare.c.3624002_d3
title: Additional file 4: Table S3. of The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

description: DAVID output of processes enriched by HSF-1 in a HS-dependent manner. (XLSX 38Â kb)
DOI: 10.17863/cam.10823
title: Research data supporting [Unveiling the role of boroxines in metal-free carbon-carbon homologations using diazo compounds and boronic acid]

description: By means of computational and experimental mechanistic studies the fundamental role of boroxines in the reaction between diazo compounds and boronic acids was elucidated. Consequently, a selective metalfree carbon–carbon homologation of aryl and vinyl boroxines using TMSCHN2, giving access to TMSpinacol boronic ester products, was developed.
DOI: 10.6084/m9.figshare.c.3624002_d4
title: Additional file 6: Table S5. of The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

description: Aging-related genes regulated by HSF-1 in a HS-dependent manner. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3624017_d2
title: Additional file 11: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: List of genes exclusively changing throughout normal murine gestation. (XLS 584 kb)
DOI: 10.6084/m9.figshare.c.3624020_d1
title: Additional file 1: of Evaluation of the vaginal flora in pregnant women receiving opioid maintenance therapy: a matched case-control study

description: Dataset supporting the conclusions of this article. (XLS 2634 kb)
DOI: 10.17863/cam.12611
title: Research data supporting "Vibronically coherent ultrafast triplet-pair formation and subsequent thermally activated dissociation control efficient endothermic singlet fission"

description: This data corresponds to the data presented in the Journal Article, " Vibronically coherent ultrafast triplet-pair formation and subsequent thermally activated dissociation control efficient endothermic singlet fission" conducted in the Cavendish between years 2013-2016 by Stern and co-workers.
DOI: 10.17863/cam.95162.2
title: Research Database of All Publically Available Samples of Gandharan Palettes/Toilet Trays

description: A CSV, xlsx and Accdb file containing an inventory list with all public records of Gandhara Palettes with associated data such as recorded provenance based on publications and museum catalogues, general descriptions of the material involved in each palette's construction, as well as periodization based on said publications. In addition, phasing is provided to enable for comparative analysis of various descriptions. In addition, links to museum catalogues are povided, as are citations and descriptions of the data itself. All data was collected from relevant bibliography such as excavation reports, previously compiled lists and museum catalogues to provide a new and updated list of the palettes, alongside important contextual information for future studies.
DOI: 10.6084/m9.figshare.c.3624002_d5
title: Additional file 5: Table S4. of The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

description: DAVID output of processes enriched by HSF-1 in a HS-independent manner. (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.c.3624017_d4
title: Additional file 12: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: List of genes exclusively changing in the RU486-induced PTL model. (XLS 573 kb)
DOI: 10.6084/m9.figshare.c.3624002_d6
title: Additional file 3: Table S2. of The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans

description: List of genes found to be regulated by HSF-1 in a HS-dependent and -independent manner via Venn diagram analysis. (XLSX 130Â kb)
DOI: 10.17863/cam.44851
title: Research data supporting "Long-Range Ballistic Propagation of Carriers in Methylammonium Lead Iodide Perovskites Thin Films"

description: The majority of data obtained from transient absorption microscope measurement. Raw data were recorded with Labview interface in TDMS format and then converted into txt files.
DOI: 10.6084/m9.figshare.c.3624017_d5
title: Additional file 1 of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: List of the total number of reads generated for each sample using RNA-Seq. (XLSX 10 kb)
DOI: 10.17863/cam.64395
title: Research Data supporting "Multi-modal imaging of high-risk ductal carcinoma in situ of the breast using C2Am: a targeted cell death imaging agent"

description: Individual images of the manuscript are labelled according to the numbering scheme used in each sheet of the Microsoft Excel file. The Microsoft Excel sheet contains the raw data used to generate the figures in the main text of the manuscript. Raw data is shown for each individual experiment showing the calculations of mean values obtained from the data, following the procedure outlined in the manuscript. The values of mean cell positions are shown. See the main manuscript for more details. Additional data and supporting methods is contained in the Supporting Information document.
DOI: 10.17863/cam.84363
title: Research data supporting [Trapping plasmonic nanoparticles with MHz electric fields]

description: Figure 1: (A) design of electrode pair and gap. (B) dark-field image of electrode pair showing the 8 µm gap, (C) array of electrode pairs with rectangular pads, (D) PDMS microfluidic chamber layout. (E) experiment setup, showing the sample with the golden electrode pairs, the microfluidic chamber and the glass substrate, as well as the light path and the equivalent circuit representing the connected electronic devices. (F) AuNPs trapped at 3 MHz, shown as a bright spot in the middle of the electrode gap, (G) fabricated sample with upper PDMS microfluidic chambers. Figure 2: (A) Dark field image before applied voltage, (B) upon trapping at electrode edges with voltage on (after 90 s), (C) initially when voltage turned off (100 ms), and (D) after a further 3 s showing diffusion of AuNPs away from electrodes (scale bar is 10 µm). (E) shows the normalized scattered intensity taken from the electrode gap, presented as a percentage of the initial value of each curve, vs rf applied voltage. Arrows show intensity at which scattering from cloud trapping rises by &gt;10% (dashed line) at 1 and 2 MHz. Figure 3: (A) Images of electrode gap at increasing rf frequency and V_p=20 V showing trapping of AuNPs in electrode gap centre, scale bar 10 µm, (B) Applied voltage vs time, (C) frequency vs time, (D) dark-field normalized scattered intensity at λ=600 nm at electrode gap centre (within red circle in A) and (E) average integrated dark-field image intensity (in terms of RGB values) in region around electrode gap. Figure 4: (A) Composite model for AuNP with ionic shell suspended in liquid medium. (B) Real part of Clausius-Mossotti factor Re(K^' ) for shell model with σ_m = 228 μS/c, ε_s=0.1*ε_m=7.9 and various σ_s. (C) Total potential at I=3.8 mM, K' = 0.05 and for varying A_H. (D) Total potential at I=3.8 mM, varying K', A_H = 1eV. (e) Barrier height (defined as the difference between local maximum and local minimum of the potential), (F) position of local minimum vs ionic strength. For all cases ζ = -54 mV (measured with Zetasizer Nano, Malvern Panalytical), ε_m = 79, V_p = 20 V.
DOI: 10.17863/cam.89667
title: Microstructural evidence for the fluid dynamical behaviour in vertically and laterally propagated dykes of the British and Irish Paleogene Igneous Province - grain size data

description: Grain size data for plagioclase in BIPIP basaltic dykes. This data was collected as part of a study of the lateral variation in grain size in dykes that propagated laterally for significant distances (up to 300km) through the shallow crust, with a range of bodies sampled both close to their magmatic source on the NW coast of Scotland, and far from their source (in Northumberland). For each intrusion, a suite of samples was collected across the full width of the body. Plagioclase grain size was measured as the long axis length of every grain intersection in each thin section. In the associated paper, the arithmetic mean of the population of grain sizes in each sample is reported.
DOI: 10.17863/cam.31655
title: Research data supporting "Structural and vibrational properties of lithium under ambient conditions within density functional theory"

description: Helmholtz free energies resulting from DFT calculations of Li phases. Results of ab initio random structure searching (AIRSS) calculations. Analysis scripts. All presented in "Structural and vibrational properties of lithium under ambient conditions withindensity functional theory". See individual folders for README files.
DOI: 10.15468/dl.2sj3fu
title: Occurrence Download

description: A dataset containing 55873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 55873 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033223-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623999_d14
title: Additional file 2: of The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism

description: Metabolites and reactions in central carbon metabolism. This table lists all the reactions (Sheet 1) and metabolites (Sheet 2) of central carbon metabolism, their abbreviations, and further associated information. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3624026_d6
title: Additional file 7: Table S4. of Association mapping by pooled sequencing identifies TOLL 11 as a protective factor against Plasmodium falciparum in Anopheles gambiae

description: Primers for gene silencing and efficiency verification. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3624017_d13
title: Additional file 3: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: Complete RNA-Seq dataset as Excel file. (XLSX 34680 kb)
DOI: 10.6084/m9.figshare.c.3624017_d14
title: Additional file 14: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: Z-scores derived from Causal Network Analysis by IPAÂŽ. (XLS 75 kb)
DOI: 10.6084/m9.figshare.c.3624017_d15
title: Additional file 4: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: Loadings derived from the OSC-PLS modeling of the 4142 DEGs detected in three models of parturition (term gestation, RU486-induced PTL, and LPS-induced PTL). (XLSX 256 kb)
DOI: 10.6084/m9.figshare.c.3624017_d16
title: Additional file 13: of Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics

description: List of genes exclusively changing in the LPS-induced PTL model. (XLS 1767 kb)
DOI: 10.17863/cam.13630
title: Data set related to the publication: "Structural performance monitoring using a dynamic data-driven BIM environment"

description: The data was collected for the ME01 project being carried out in the Department of Engineering at the University of Cambridge under EPSRC grant no. EP/L010917/1 The ME01 project is a fibre optic instrumentation and dynamic monitoring programme at Norton Bridge, UK, part of the Stafford Area Improvements Programme. The strain data was collected using fibre optic monitoring technologies based on fibre Bragg gratings.
DOI: 10.17863/cam.6923
title: Research data supporting "Novel surface features for automated detection of focal cortical dysplasias in paediatric epilepsy"

description: Data used to train neural network classifier for FCD detection in a paediatric cohort. These are surface-based cortical features derived from structural MRI data, such as cortical thickness, FLAIR intensity etc. The scripts to generate the surface based features are available through freesurfer (https://surfer.nmr.mgh.harvard.edu/) and our github (https://github.com/kwagstyl/FCDdetection).
DOI: 10.15468/dl.c3kney
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.86569 43.58672,3.87067 43.58672,3.87067 43.5911,3.86569 43.5911,3.86569 43.58672))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2020-2024"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033224-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.48347
title: Research data supporting "Predicting novel superconducting hydrides using machine learning approaches"

description: Crystal structures of the materials for which critical temperatures were calculated in the paper "Predicting novel superconducting hydrides using machine learning approaches" (https://arxiv.org/abs/2001.09852). These crystal structures were generated by selecting low-enthalpy candidates from a random structure search, and performing a geometry optimization at the pressure(s) of interest (the parameters for which are included in each file). The data consists of a set of crystal structure files are named with the following format: a_b_c_d_e_kpts_scf.in where a = the stoichiometry of the material b = the space group of the crystal c = the number of formula units per primitive cell d = pressure at which relaxed e = "primary", or "aux" corresponding to the two different k-point grids used These files are human-readable and contain the crystal lattice specification under the section CELL_PARAMETERS and the atomic positions within the lattice under the ATOMIC_POSITIONS, as well as the various named parameters used in the density functional theory calculations. They may also be read by the quantum-espresso software (https://www.quantum-espresso.org/) or converted to many common crystal-structure formats using the c2x software (https://www.c2x.org.uk/).
DOI: 10.17863/cam.44148
title: Research data supporting "Effect of nickel aluminide on the bainite transformation in a Fe-0.45C–13Ni–3Al–4Co steel, and associated properties"

description: The data cover new steels that have a nanostructure but unusually contain intermetallic compounds within a carbide-free bainitic structure. This investigation deals specifically with the role of nickel aluminide precipitates on the rate of the bainite reaction, in recent alloys intended for applications at about 400°C. The data are fully reported in the associated publication, but the dataset contains much ancillary information created during the project. See the Readme file for more information about each data folder.
DOI: 10.17863/cam.89177
title: Research data supporting: "Arch action in reinforced concrete subjected to shear"

description: This dataset contains results from an experimental programme that investigated the effectiveness of arch action on the shear behaviour of reinforced concrete beams. It includes information on concrete mix composition, results from standard material characterisation tests (i.e. compressive strength on cubes and cylinders, indirect tensile splitting strength), load-deflection curves, measurements of steel tensile strains and concrete compressive strains.