cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8293292.v1
title: parameters.m from Nectar, humidity, honey bees (<i>Apis mellifera</i>) and varroa in summer: a theoretical thermofluid analysis of the fate of water vapour from honey ripening and its implications on the control of <i>Varroa destructor</i>

description: This theoretical thermofluid analysis investigates the relationships between honey production rate, nectar concentration and the parameters of entrance size, nest thermal conductance, brood nest humidity and the temperatures needed for nectar to honey conversion. It quantifies and shows that nest humidity is positively related to the amount, and water content of the nectar being desiccated into honey and negatively with respect to nest thermal conductance and entrance size. It is highly likely that honeybees, in temperate climates and in their natural home, with much smaller thermal conductance and entrance, can achieve higher humidities more easily and more frequently than in man-made hives. As a consequence, it is possible that <i>Varroa destructor</i>, a parasite implicated in the spread of pathogenic viruses and colony collapse, which loses fecundity at absolute humidities of 4.3 kPa (approx. 30 gm<sup>−3</sup>) and above, is impacted by the more frequent occurrence of higher humidities in these low conductance, small entrance nests. This study provides the theoretical basis for new avenues of research into the control of varroa, via the modification of beekeeping practices to help maintain higher hive humidities.
DOI: 10.17605/osf.io/v4chf
title: Target Materialism and Observer Empathy

description: This study explores the impact of materialistic values of empathy targets on observer empathy through a series of empirical studies, and examines the psychological mechanisms and boundary conditions underlying this effect.
DOI: 10.6084/m9.figshare.1064368.v1
title: From Swab to Publication Sample Data (Tatumella)

description: Raw fastq reads (contaminated with yeast) Sanger 16s .ab1 RAST 16s fasta RDP alignment Cleaned up alignment FastTree phylogenetic tree FastTree rerooted phylogenetic tree
DOI: 10.6084/m9.figshare.25329850.v1
title: Supplementary Material for: A Case Report of Pulmonary Edema Secondary to Large Volume Bowel Preparation in a High-risk Patient with Multiple Cardiopulmonary Co-morbidities

description: Introduction:
Polyethylene glycol 3350 and electrolytes is a commonly prescribed bowel regimen for colonoscopy preparation with an overall excellent safety profile, though prior reports have demonstrated risk of volume overload.

Case presentation:
A 55-year-old man with significant cardiopulmonary co-morbidities was admitted for acute hypoxic respiratory failure and subsequent evaluation for lung transplant. As part of his pre-transplant evaluation, colon cancer screening was advised. Despite multiple days of bowel preparation his stools contained sediment. Unfortunately, he developed pulmonary edema due to prolonged bowel preparation. 

Conclusion:
While bowel preparation is considered generally safe, our case report highlights the importance of judicious use with monitoring in high-risk individuals.
DOI: 10.6084/m9.figshare.25347739.v3
title: Mapping Iberian New Guinea

description: This research charts the interplay of local knowledge, Iberian experience, and European cosmography in the fragmentary knowing, naming, and mapping of New Guinea’s coasts in the two centuries after 1511
DOI: 10.6084/m9.figshare.23542803.v1
title: NC2023_sample

description: NC2023_sample
DOI: 10.6084/m9.figshare.4530707.v1
title: BAM and BAI files

description: Massively parallel deep sequencing of plasma cfDNA methylation in HCC and controls.
DOI: 10.6084/m9.figshare.23309336.v1
title: Dataset of mechanical properties and electrical conductivity of copper-based alloys

description: The data was compiled into a tabular format. The database contains 1831 records from about 50 articles. An individual record is defined as having a unique set of descriptors (composition, processing route), targets (properties), and reference combinations.
DOI: 10.4121/uuid:c423619a-50d7-4174-88b6-6d4a25b60fa8
title: Remote sensing of the river Rhine plume

description: The data content of remote sensing (RS) images of sea surface temperature (SST) and normalized water-leaving radiance (nLw), for the year 1998, with respect to the River Rhine plume, is investigated. Questions that this study tries to answer are: is it possible to identify the plume from the available RS images, and under which conditions is this possible? How much information on the plumes behaviour can be derived from these images? Does or can this information contribute to our general knowledge of the plume? The images provide a spatial resolution of I km2 and a temporal resolution of I or 2 images per day per sensor for nLw and SST, respectively (in the case of a cloudless atmosphere). In the presence of clouds, no signal is detected for the area of surface water underneath the clouds. Two hypotheses are set up to explain how the RS images can be used to trace the plume. In the hypotheses links are established between salinity gradients that delimit the plume and SST and nLw respectively. The results are based on these hypotheses. From the available images, 9 SST images in spring provide detailed information on the stratified plume and allow for derivation of indirect information on sub-surface processes. In winter the temperature gradients as visible on SST imagery seem to indicate the broad plume patterns. From the nLw images it was not possible to identify the boundaries of the plume. However it is expected that the nLw images are an excellent source for monitoring suspended particulate matter (SPM) in the North Sea. The general conclusion of this study is that the RS data used in this project provide a valuable source of information, with respect to the Dutch coastal zone, in addition to the currently available measurement techniques and computer models. The SST imagery turns out to be particularly useful for tracing stratification, whereas nLw imagery seems to be an excellent source for monitoring SPM in the North Sea. For detailed monitoring of the DCZ and the plume, increased spatial and temporal resolutions are required.
DOI: 10.6084/m9.figshare.17156174.v1
title: Ant-tree bipartite networks

description: This data set include ant-tree interaction and ant abundance data from five sampling sites in Xishuangbanna, Yunnan, China. NBH = Nabanhe; ML = Menglun; MY = Mengyuan; BB = Bubeng; SY = Shangyong.
DOI: 10.6084/m9.figshare.29037176.v1
title: GMTSAR installation and processing Guide - Practical InSAR handbook series

description: Interferometric Synthetic Aperture Radar (InSAR) uses the pairwise phase difference of SAR images to estimate the amount of deformation and displacement of the earth's surface. InSAR technique is used to estimate the displacement caused by earthquakes, volcanoes, subsidence, and settlement. InSAR has good spatial accuracy and density compared to other methods of estimating surface changes, such as the global positioning system (GPS). It is also economically acceptable due to its time and cost savings. Interpreting the results of InSAR requires the processing of SAR images by SAR image processing software. GMTSAR software is written the C Programming Language by Sandwell, D. et al. This software has high speed in processing SAR images and can process SAR products such as Envisat, ALOS-1, TerraSAR-X, COSMOS-SkyMed, Sentinel-1, and ALOS-2. This software is open-source (GNU General Public License) that can be used to process Small Baseline Subset (SBAS) time-series This book is written in two major general chapters. In the first chapter, we will show step by step how to install GMTSAR software and other software on Ubuntu 20.04 is taught. Also, in this chapter, download the necessary data such as Sentinel-1 images, and DEM is taught. In the second part, which is the main chapter of the book, the processing of the Sentinel-1 images with GMTSAR software is explained. First of all, the process of processing two earthquake-related images using the DInSAR technique is explained so that the user can obtain the amount of displacement caused by the earthquake with this technique. The SBAS time-series is then processed using GMTSAR software to estimate time series ground deformation determine the rate of subsidence of the earth's crust.
DOI: 10.6084/m9.figshare.1562452.v1
title: Association of SNPs in EGR3 and ARC with Schizophrenia Supports a Biological Pathway for Schizophrenia Risk

description: Genotyping ped/map files & metadata.
DOI: 10.6084/m9.figshare.17711534.v1
title: globallakes_level-volume_change

description: global lakes (&gt;10km²) dataset with area data and level-volume change rate
DOI: 10.6084/m9.figshare.1606140.v1
title: Cavalier King Charles Spaniels with Chiari-like malformation and Syringomyelia have increased variability of spatio-temporal gait characteristics

description: Cavalier King Charles Spaniels and border terriers, gait analysis data
DOI: 10.6084/m9.figshare.27604449.v3
title: Underlying data: Does Happiness Impact Behavioral Intention in Adverse Services?

description: This file includes the raw data used for data analysis. The data was analyzed using SmartPLS.
DOI: 10.6084/m9.figshare.27877413.v1
title: Dataset for Weld Seam Analysis and Discontinuity Prediction for Laser Beam Butt Welding

description: This dataset contains recordings of 100 welds with two different welding configurations. The dataset was recorded with three inductive probes which measure the absolute positional change of the metal sheet during the weld. A Long-wave Infrared (LWIR) camera was used to record the thermal radiation and receive a visual representation of the weld. The dataset can be utilized for forecasting purposes, such as gap prediction and classification tasks like quality monitoring.
DOI: 10.6084/m9.figshare.22140284.v1
title: Strain level Ethiopian chicken caecal MAGs

description: Metagenome asembled genomes (MAGs) constructed from raw data uploaded to bioproject PRJEB57055. MAGs are equivalent to bacterial strains, and were dereplicated at 99% ANI. These strains orginated from the caeca of indigenous Ethiopoian chickens.
DOI: 10.6084/m9.figshare.21741365.v1
title: MOF-d-bands

description: These are the output and structure files used in our MOF d-band paper.
DOI: 10.6084/m9.figshare.21975647.v1
title: ST11 assemblies

description: 1787 E. coli ST11 genome assemblies in fasta format. All downloaded from Enterobase.
DOI: 10.6084/m9.figshare.22262155.v1
title: Sup Fig 1

description: this is the sup figure 1 for the manuscript for E2F7-ATX
DOI: 10.6084/m9.figshare.27695070.v1
title: 1.OrthoFinder_orthology

description: These datasets are the result of the identification of orthologous genes between <i>Tribolium</i> and <i>Drosophila</i>.
DOI: 10.6084/m9.figshare.11954340.v1
title: Additional file 7 of Bacillus velezensis LG37: transcriptome profiling and functional verification of GlnK and MnrA in ammonia assimilation

description: Additional file 7 Table S4. Summary of assembly and prediction of LG37.
DOI: 10.6084/m9.figshare.11936409.v1
title: DATASET(rc and qc_set for two_phase flow)

description: <i>Figure 8 </i>Size, <i>S<sub>NW</sub></i>, of the set of invaded pipes at breakthrough as a function of <i>Ca</i> for various values of σ/&lt;<i>r</i>&gt; and <i>z</i> as indicated in the insets. The invading fluid was assumed fully non-wetting in these simulations and the viscosity ratio was <i>M</i> = 100. Note that the points corresponding to <i>Ca</i> = 10<sup>-6</sup> were obtained from invasion-percolation simulations. <i>Figure 9</i> Sizes <i>S</i><sub>1</sub> and <i>S</i><sub>2</sub> of the intersection sets {1} (abcd) and {2} (efgh) as functions of <i>Ca</i> for various values of σ/&lt;<i>r</i>&gt; and <i>z</i> as indicated in the insets. These simulations are the same as those of figure 8. <i>Figure 10</i> Size <i>S</i><sub>3</sub> of the intersection sets {3} as a function of <i>Ca</i> for various values of σ/&lt;<i>r</i>&gt; and <i>z</i> as indicated in the insets. These simulations are the same as those of figures 9 and 10.
DOI: 10.6084/m9.figshare.12705026.v1
title: even-hiseq-simulated-reads

description: even-hiseq-simulated-reads, see: https://hackmd.io/@astrobiomike/simulating-illumina-reads
DOI: 10.6084/m9.figshare.13220807.v1
title: Global Welfare Dataset (GLOW)

description: The Global Welfare Dataset (GLOW) is a cross-national panel dataset that aims at facilitating comparative social policy research on the Global North and Global South. The database includes 381 variables on 61 countries from years between 1989 and 2015. The database has four main categories of data: welfare, development, economy and politics.<br>The data is the result of an original data compilation assembled by using information from several international and domestic sources. Missing data was supplemented by domestic sources where available. We sourced data primarily from these international databases:<br>Atlas of Social Protection Indicators of Resilience and Equity – ASPIRE (World Bank)Government Finance Statistics (International Monetary Fund)Social Expenditure Database – SOCX (Organisation for Economic Co-operation and Development)Social Protection Statistics – ESPROSS (Eurostat)Social Security Inquiry (International Labour Organization)Social Security Programs Throughout the World (Social Security Administration)Statistics on Income and Living Conditions – EU-SILC (European Union)World Development Indicators (World Bank)<br>However, much of the welfare data from these sources are not compatible between all country cases. We conducted an extensive review of the compatibility of the data and computed compatible figures where possible. Since the heart of this database is the provision of social assistance across a global sample, we applied the ASPIRE methodology in order to build comparable indicators across European and Emerging Market economies. Specifically, we constructed indicators of average per capita transfers and coverage rates for social assistance programs for all the country cases not included in the World Bank’s ASPIRE dataset (Austria, Belgium, Bulgaria, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Luxembourg, Netherlands, Norway, Poland, Portugal, Romania, Slovak Republic, Slovenia, Spain, Sweden, Switzerland, and United Kingdom.)<br>For details, please see:https://glow.ku.edu.tr/about<br>
DOI: 10.6084/m9.figshare.19227894.v1
title: Data extraction sheet for meta analysis

description: Data extraction sheet for included studies in meta analysis. Registered in PROSPERO.
DOI: 10.6084/m9.figshare.28443650.v1
title: ResFinder AMR Gene Profile of <i>Proteus</i> sp. Strain NGCRVN-01

description: This dataset contains the antimicrobial resistance (AMR) gene profile of Proteus sp. strain NGCRVN-01, identified using the ResFinder (v4.6.0) tool. The analysis was conducted on a draft genome sequence obtained from a clinical isolate and sequenced at NSU Genome Research Institute (NGRI), Dhaka, Bangladesh.
DOI: 10.6084/m9.figshare.25357192.v2
title: Dataset for research entitled "Hydrochar as a potential soil conditioner for mitigating H<sup>+</sup> production in the nitrogen cycle: A comparative study"

description: In this study, we investigated how rice-straw hydrochar would affect soil nitrification and nitrate leaching. We (1) determined how hydrochar addition interferes with nitrification mediated by soil microbes;(2) verified whether hydrochar input notably reduces nitrate leaching risks; and (3) elucidated the possible mechanisms by which hydrochar impacts soil nitrification and nitrate leaching relative to pyrochar.Our results showed that hydrochar addition mitigated the net nitrification rate by 3.75%~48.75% and 57.92%~78.19%, respectively, in contrast to the control and pyrochar treatments. This occurred mainly because a greater amount of dissolved organic carbon (DOC) was released from hydrochar (148.42 mg kg<sup>-1</sup>~255.58 mg kg<sup>-1</sup>) than the other treatments (117.13 mg kg<sup>-1</sup>~122.22 mg kg<sup>-1</sup>), which stimulated greater microbial nitrogen immobilization.The abundances of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were dramatically elevated by 25.62%~153.19% and 12.38%-22.39%, respectively, in the hydrochar treatments because of DOC-driven stimulation. The cumulative leaching loss of NO<sub>3</sub><sup>-</sup>-N in soils amended with hydrochar was markedly reduced by 43.78%~59.91% and 61.70%~72.82% compared with that in the control and pyrochar treatments, respectively, becausehydrochar promoted the soil water holding capacity by 2.70%~9.04% and reduced the residual NO<sub>3</sub><sup>-</sup>-N content by 20.36%~36.21%.Collectively, we highlighted that (1) Hydrochar addition mitigated the increase in net H<sup>+ </sup>production resulting from soil nitrification and the NO<sub>3</sub><sup>-</sup>-N leaching process; (2) Hydrochar can decrease the soil nitrification rate by providing abundant DOC and enhancing microbial nitrogen immobilization; (3) The promoting effect of soil nitrification caused by increased AOA and AOB abundance might be neutralized by intensive NH<sub>4</sub><sup>+</sup>-N assimilation in hydrochar-amended soils; (4) Hydrochar decreased the risk of NO<sub>3</sub><sup>-</sup>-N loss via leaching, as it promoted soil saturated water-holding capacity and reduced NO<sub>3</sub><sup>-</sup>-N content. A graphical abstract was also provided below to help understand the framework and results of this work.
DOI: 10.6084/m9.figshare.24434623.v2
title: Tremble_et_al_2023_BoletaceaePhylogeny.zip

description: This folder contains all gene alignments produced by mafft, gene trees produced by iqtree2, and coalescent species tree produced by astral.File Descriptions:Boletaceae_allBUSCO_astral-hybrid_summaryCoalescent.BS10_branchDropped.paxillusRoot.tre = This is the summary coalescent phylogeny produced by astral hybrid from all BUSCO genes used in the study, and is rooted with Paxillus.Boletaceae_allBUSCO_astral-hybrid_summaryCoalescent.BS10_branchDropped.tre = This is the unrooted summary coalescent phylogeny produced by astral hybrid from all BUSCO genes used in the study.Boletaceae_allBUSCO_concatenatedSupermatrix.mafft.fasta.gz = Alignment of all BUSCO genes concatenated. Boletaceae_allBUSCO_concatenatedSupermatrix.partitions.txt.gz = Partitions of all BUSCO gene concatenated dataset. Boletaceae_allBUSCO_concatenatedSupermatrix.treefile = Summary coalsecent phylogeny with branch lengths estimated with IQtree using the above concatenated dataset.alignments/ = BUSCO gene alignments with specimenID and geneID in fasta header. alignments_noGeneName/ = BUSCO gene alignments with only specimenID in fasta headerraw_genes/ = unaligned BUSCO genes with specimenID and geneID in fasta header.treefiles/ = individual gene trees produced from BUSCO genes with iqtree2 <br>
DOI: 10.6084/m9.figshare.25683687.v3
title: <b>Resilience in the Face of Uncertainty: Navigating Supply Chain Challenges Through Proactive </b><b>Risk Surveillance </b><b>and Mitigation Strategies among SMEs in ASEAN countries.</b>

description: Effective supply chain risk management is vital for the consumer products industry, as demonstrated by research on 385 entrepreneurs. Supply chain performance, ensuring end-customer demands are met, hinges on factors like commodity availability, on-time deliveries, and inventory maintenance. Partial Least Squares Structural Equation Modeling (PLS-SEM) shows a strong correlation between supply chain performance and risks, emphasizing the need for robust risk management. In the ASEAN context, understanding diverse economic development, infrastructure, and regulations is key. Leveraging the ASEAN Economic Community (AEC) and regional trade agreements can mitigate risks and enhance performance. Collaboration with governmental bodies is crucial due to regulatory complexities, cross-border logistics, and geopolitical risks. Tailoring strategies to each ASEAN country's unique characteristics, including cultural nuances and market variations, is essential. Optimizing logistics and infrastructure further aids in risk management. Alignment with regional and national governments enables proactive issue resolution and opportunity exploitation, fostering resilience and growth in the ASEAN consumer products industry.
DOI: 10.6084/m9.figshare.28816634.v1
title: Source data of Evidential Deep Learning-based Drug-Target Interaction Prediction

description: Drug-target interaction (DTI) prediction is a crucial component of drug discovery. Recent deep learning methods show great potential in this field but also encounter substantial challenges. These include generating reliable confidence estimates for predictions, enhancing robustness when handling novel, unseen DTIs, and mitigating the tendency toward overconfident and incorrect predictions. To solve these problems, we propose EviDTI, a novel approach utilizing evidential deep learning (EDL) for uncertainty quantification in neural network-based DTI prediction. EviDTI integrates multiple data dimensions, including drug 2D topological graphs and 3D spatial structures, and target sequence features. Through EDL, EviDTI provides uncertainty estimates for its predictions. Experimental results on three benchmark datasets demonstrate the competitiveness of EviDTI against 11 baseline models. In addition, our study shows that EviDTI can calibrate prediction errors. More importantly, well-calibrated uncertainty information enhances the efficiency of drug discovery by prioritizing DTIs with higher confident predictions for experimental validation. In a case study focused on tyrosine kinase modulators, uncertainty-guided predictions identify novel potential modulators targeting tyrosine kinase FAK and FLT3. These results underscore the potential of evidential deep learning as a robust tool for uncertainty quantification in DTI prediction and its broader implications for accelerating drug discovery.
DOI: 10.6084/m9.figshare.25735455.v1
title: Supplementary Material for: Cerebral Venous Sinus Thrombosis with Bilateral Optic Disc Swelling and Bilateral Sixth Nerve Palsies in the Absence of Headache: A Case Report

description: Introduction: We report a case of cerebral venous sinus thrombosis (CVST) that presented with bilateral optic disc swelling and diplopia in the absence of headaches. Case Presentation: A 54-year-old woman with no relevant medical history presented with a 2-week history of diplopia and no loss of visual acuity in each eye. Eye movements revealed bilateral abduction deficits, and fundoscopic examination revealed bilateral optic disc swelling. Non-contrast computed tomography of the head showed no abnormalities. Magnetic resonance venography revealed the absence of flow in the superior sagittal and left transverse sinuses as a consequence of thrombosis. The patient was diagnosed with intracranial hypertension associated with abducens nerve palsies secondary to CVST and was initiated on anticoagulant therapy. CVST can lead to stroke even in younger individuals. Conclusion: CVST should be considered in differential diagnosis when bilateral papilledema and abducens nerve palsies are present, even in the absence of headache or other neurological findings.
DOI: 10.6084/m9.figshare.23551023.v2
title: Supplementary Table 1. Metadata of RNA-seq data.

description: This data sheet describes the metadata of RNA-seq data collected from the public database (SRA).
DOI: 10.6084/m9.figshare.3568698.v1
title: Appendix A. Site information, photographs of three land-use type of paddy terraces, and survey design used in this study.

description: Site information, photographs of three land-use type of paddy terraces, and survey design used in this study.