cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.s7t47
title: Data from: Infants prefer the faces of strangers or mothers to morphed faces: an uncanny valley between social novelty and familiarity

description: The “uncanny valley” response is a phenomenon involving the elicitation of
 a negative feeling and subsequent avoidant behaviour in human adults and
 infants as a result of viewing very realistic humanlike robots or computer
 avatars. It is hypothesised that this uncanny feeling occurs because the
 realistic synthetic characters elicit the concept of “human” but fail to
 satisfy it. Such violations of our normal expectations regarding social
 signals generate a feeling of unease. This conflict-induced uncanny valley
 between mutually exclusive categories (human and synthetic agent) raises a
 new question: could an uncanny feeling be elicited by other mutually
 exclusive categories, such as familiarity and novelty? Given that infants
 prefer both familiarity and novelty in social objects, we address this
 question as well as the associated developmental profile. Using the
 morphing technique and a preferential-looking paradigm, we demonstrated
 uncanny valley responses of infants to faces of mothers (i.e.,
 familiarity) and strangers (i.e., novelty). Furthermore, this effect
 strengthened with the infant’s age. We excluded the possibility that
 infants detect and avoid traces of morphing. This conclusion follows from
 our finding that the infants equally preferred strangers’ faces and the
 morphed faces of two strangers. These results indicate that an uncanny
 valley between familiarity and novelty may accentuate the categorical
 perception of familiar and novel objects.
description: Infants'
 looking-time data and FiguresInfants'
 mean-percentile fixation duration on each of the face types for figures 1
 and 2Infants_Looking-Time_Data.xls
DOI: 10.5061/dryad.4m35m
title: Data from: Global biogeographic patterns in bipolar moss species

description: A bipolar disjunction is an extreme, yet common, biogeographic pattern in
 non-vascular plants, yet its underlying mechanisms (vicariance or
 long-distance dispersal), origin and timing remain poorly understood.
 Here, combining a large-scale population dataset and multiple dating
 analyses, we examine the biogeography of four bipolar Polytrichales
 mosses, common to the Holarctic (temperate and polar Northern Hemisphere
 regions) and the Antarctic region (Antarctic, sub-Antarctic, southern
 South America) and other Southern Hemisphere (SH) regions. Our data reveal
 contrasting patterns, for three species were of Holarctic origin, with
 subsequent dispersal to the SH, while one, currently a particularly common
 species in the Holarctic (Polytrichum juniperinum), diversified in the
 Antarctic region and from here colonized both the Holarctic and other SH
 regions. Our findings suggest long-distance dispersal as the driver of
 bipolar disjunctions. We find such inter-hemispheric dispersals are rare,
 occurring on multi-million-year timescales. High-altitude tropical
 populations did not act as trans-equatorial ‘stepping-stones’, but rather
 were derived from later dispersal events. All arrivals to the Antarctic
 region occurred well before the Last Glacial Maximum and previous
 glaciations, suggesting that, despite the harsh climate during these past
 glacial maxima, plants have had a much longer presence in this southern
 region than previously thought.
description: Bayesian_analysesnex and tree files for Bayesian phylogenetic analyses of trnL-F and ITS 1+2ML_analysesRAxML-GUI tree filesArlequin_filesArlequin arp analyses and xml result filesHaplotype_network_analysesTCS network nex files (ITS1+2 and ITS2 only) used in PopartBEAST_analysesxml and tree files for the different molecular dating analyses as used in BEAST. These include the two two-step dating analyses, one with (I1a + I2a) and one without (I1b + I2b) the fossil Eopolytrichum antiquum, and the molecular rate analysis (II).
DOI: 10.5061/dryad.vj4f7
title: Data from: Microsatellite analysis of genetic diversity and population structure of Arabian horse populations

description: The Arabian horse ignites imagination throughout the world. Populations of
 this breed exist in many countries, and recent genetic work has examined
 the diversity and ancestry of a few of these populations in isolation.
 Here we explore seven different populations of Arabians represented by 682
 horses. Three of these are Middle Eastern populations from near the
 historical origin of the breed, including Syrian, Persian, and Saudi
 Arabian. The remaining Western populations are found in Europe (the
 Shagya-Arabian and Polish-Arabian) and America (American-Arabian).
 Analysis of genetic structure was carried out using 15 microsatellite
 loci. Genetic distances, AMOVA, factorial correspondence analysis and a
 Bayesian method were applied. The results consistently show higher level
 of diversity within the Middle Eastern populations than the Western
 populations. The Western Arabian populations were the main source of among
 populations variation. Genetic differentiation was not strong among all
 Middle Eastern populations, but all American-Arabians showed
 differentiation from Middle Eastern populations and were somewhat uniform
 among themselves. Here, we explore the diversities of many different
 populations of Arabian horses, and find that populations not from the
 Middle East have noticeably lower levels of diversity, which may adversely
 affect the health of these populations.
description: Khanshour et
 al_SupMat_Figure S1Comparisons among 15
 microsatellite markers and the number of populations out of 14 for which
 any pair of markers shows significant LD at p&lt;0.05Khanshour et
 al_SupMat_Figure S2Hardy-Weinberg
 equilibrium status in 14 populations and 15 loci. For the total markers
 together in each population, the Fisher’s method was used after Bonferroni
 correction to determine the significant deviation of a population from H-W
 equation. Population abbreviations could be seen in Table
 1Khanshour et
 al_SupMat_Figure S3The FCA among all
 populations except the PZ (as generated by GENETIX). Each population was
 represented by its center of gravity point into 3D plot. Axis 1 accounts
 for 24.20% of the variation. Population abbreviations are found Table 1.
 The percentage of variance explained by each axis is found in the axes
 labels.Khanshour et
 al_SupMat_Figure S4ΔK distribution along of
 different values of clusters (K) for 11 populations depending on Evanno’s
 method (Evanno 2005) using Structure Harvester
 application.Khanshour et
 al_SupMat_Figure S5ΔK distribution along of
 different values of clusters (K) for ten populations depending on Evanno’s
 method (Evanno 2005) using Structure Harvester
 application.
DOI: 10.5061/dryad.f7m5t
title: Data from: Shaking the Diptera tree of life: performance analysis of nuclear and mitochondrial sequence data partitions

description: The value of mitochondrial versus nuclear gene sequence data in
 phylogenetic analysis has received much attention without yielding
 definitive conclusions. Theoretical arguments and empirical data suggest a
 lower phylogenetic utility than equivalent nuclear gene sequences, but
 there are many examples of important progress made using mitochondrial
 sequences. We undertook a systematic performance analysis of mitochondrial
 and nuclear sequence partitions taken from a representative sample of
 dipteran species. When analysed alone, mitochondrial genes generally
 performed less well than nuclear genes; however, these genes resolved some
 branches for which nuclear genes failed. Moreover, the combined use of
 mitochondrial and nuclear sequences produced superior results without
 artifacts for nodes where mitochondrial and nuclear gene data generated
 conflicting topologies. These findings strongly advocate the inclusion of
 mitochondrial sequences, even in deep phylogeny reconstruction. Comparison
 of tree support between our and previous analyses identified robustly
 supported high-confidence clades in the Diptera, but also revealed
 problematic groupings in need of further analysis.
description: Concatenated
 mitochondial gene alignment (Gblock)Mitochondrial genes used
 in this study, Gblock data set. See Supplemental Table S2. ATP6, 1, 666;
 ATP8, 667, 747; Cox1, 748, 2274; Cox2, 2275, 2955; Cox3, 2956, 3738; CytB,
 3739, 4869; ND1, 4870, 5793; ND2, 5794, 6651; ND3, 6652, 6999; ND4, 7000,
 8307; ND4L, 8308, 8601; ND5, 8602, 10305; ND6, 10306,
 10812.mit_genes.fastaConcatenated nuclear gene alignment (Gblock)Nuclear genes used in this study, Gblock data set. See Supplemental Table S2. CAD, 1, 3291; PGD, 3292, 3999; SNF, 4000, 4206; AATS, 4207, 5232; PER, 5233, 5778; SINA, 5781, 6125; TPI, 6126, 6527.nuc_genes.fasta
DOI: 10.5061/dryad.r02r1
title: Data from: Immune response and gut microbial community structure in bumblebees after microbiota transplants

description: Microbial communities are a key component of host health. As the
 microbiota is initially ‘foreign’ to a host, the host's immune system
 should respond to its acquisition. Such variation in the response should
 relate not only to host genetic background, but also to differences in the
 beneficial properties of the microbiota. However, little is known about
 such interactions. Here, we investigate the gut microbiota of the
 bumblebee, Bombus terrestris, which has a protective function against the
 bee's natural trypanosome gut parasite, Crithidia bombi. We
 transplanted ‘resistant’ and ‘susceptible’ microbiota into ‘resistant’ and
 ‘susceptible’ host backgrounds, and studied the activity of the host
 immune system. We found that bees from different resistance backgrounds
 receiving a microbiota differed in aspects of their immune response. At
 the same time, the elicited immune response also depended on the received
 microbiota's resistance phenotype. Furthermore, the microbial
 community composition differed between microbiota resistance phenotypes
 (resistant versus susceptible). Our results underline the complex feedback
 between the host's ability to potentially exert selection on the
 establishment of a microbial community and the influence of the microbial
 community on the host immune response in turn.
description: Data
 FilesContains data for colony
 resistance profile, gene expression data and otu count
 table.PaperData.xlsxOTU centroid sequences fasta fileOTU centroid sequences fasta fileOTU_CentroidSequences.fasta
DOI: 10.5061/dryad.63dr0
title: Data from: Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species

description: Biological introductions bring into contact species that can still
 hybridize. The evolutionary outcomes of such secondary contacts may be
 diverse (e.g. adaptive introgression from or into the introduced species)
 but are not yet well examined in the wild. The recent secondary contact
 between the non-native sea squirt Ciona robusta (formerly known as C.
 intestinalis type A) and its native congener C. intestinalis (formerly
 known as C. intestinalis type B), in the Western English Channel, provides
 an excellent case study to examine. To examine contemporary hybridization
 between the two species, we developed a panel of 310 ancestry-informative
 SNPs from a population transcriptomic study. Hybridization rates were
 examined on 449 individuals sampled in eight sites from the sympatric
 range and five sites from allopatric ranges. The results clearly showed an
 almost complete absence of contemporary hybridization between the two
 species in syntopic localities, with only one-first-generation hybrid and
 no other genotype compatible with recent backcrosses. Despite the almost
 lack of contemporary hybridization, shared polymorphisms were observed in
 sympatric and allopatric populations of both species. Furthermore, one
 allopatric population from SE Pacific exhibited a higher rate of shared
 polymorphisms compared to all other C. robusta populations. Altogether,
 these results indicate that the observed level of shared polymorphism is
 more probably the outcome of ancient gene flow spread afterwards at a
 worldwide scale. They also emphasize efficient reproductive barriers
 preventing hybridization between introduced and native species, which
 suggests hybridization should not impede too much the expansion and the
 establishment of the non-native species in its introduction range.
description: Full dataset 310
 SNPsFull dataset of the 310
 SNPs using to investigate contemporary hybridization and introgression
 patterns between two Ciona species (Ciona robusta and Ciona intestinalis).
 The file contains the genotype of the 451 individuals studied (213 of C.
 robusta, 236 of C. intestinalis and 2 F1 hybrids from experimental
 crosses; note that the natural F1 hybrid found in our study is included in
 the 236 individuals of C. intestinalis). The file contains also
 informations on the 310 SNPs (chromosome number, exact nucleotide position
 along chromosomes and category of polymorphism).Datafile_CrobCint_310SNPs.xlsx
DOI: 10.15468/dl.q6mbp7
title: Occurrence Download

description: A dataset containing 1031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Kenya",
 "Geometry POLYGON((39.77467 -3.51376,40.05945 -3.51376,40.05945 -3.16084,39.77467 -3.16084,39.77467 -3.51376))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 1031 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000585-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18381719
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Zoë Goodwin, https://orcid.org/0000-0003-2926-1645. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5061/dryad.mv5t7
title: Data from: Utilization of health services in a resource-limited rural area in Kenya: prevalence and associated household-level factors

description: Introduction Knowledge of utilization of health services and associated
 factors is important in planning and delivery of interventions to improve
 health services coverage. We determined the prevalence and factors
 associated with health services utilization in a rural area of Kenya. Our
 findings inform the local health management in development of
 appropriately targeted interventions. Methods and Results We used a
 cluster sample survey design and interviewed household key informants on
 history of illness for household members and health services utilization
 in the preceding month. We estimated prevalence and performed random
 effects logistic regression to determine the influence of individual and
 household level factors on decisions to utilize health services.
 1230/6,440 (19.1%, 95% CI: 18.3%-20.2%) household members reported an
 illness. Of these, 76.7% (95% CI: 74.2%-79.0%) sought healthcare in a
 health facility. The majority (94%) of the respondents visited
 dispensary-level facilities and only 60.1% attended facilities within the
 study sub-counties. Of those that did not seek health services, 43%
 self-medicated by buying non-prescription drugs, 20% thought health
 services were too costly, and 10% indicated that the sickness was not
 serious enough to necessitate visiting a health facility. In the
 multivariate analyses, relationship to head of household was associated
 with utilization of health services. Relatives other than the nuclear
 family of the head of household were five times less likely to seek
 medical help (Odds Ratio 0.21 (95% CI: 0.05-0.87). Conclusion Dispensary
 level health facilities are the most commonly used by members of this
 community, and relations at the level of the household influence
 utilization of health services during an illness. These data enrich the
 perspective of the local health management to better plan the allocation
 of healthcare resources according to need and demand. The findings will
 also contribute in the development of community-level health coverage
 interventions that target the disadvantaged household groups.
description: PONE-D-16-28880R1_FTC1_data2
DOI: 10.5061/dryad.9g7d8
title: Data from: Biodiversity ensures plant-pollinator phenological synchrony against climate change

description: Climate change has the potential to alter the phenological synchrony
 between interacting mutualists, such as plants and their pollinators.
 However, high levels of biodiversity might buffer the negative effects of
 species-specific phenological shifts and maintain synchrony at the
 community level, as predicted by the biodiversity insurance hypothesis.
 Here, we explore how biodiversity might enhance and stabilise phenological
 synchrony between a valuable crop, apple and its native pollinators. We
 combine 46 years of data on apple flowering phenology with historical
 records of bee pollinators over the same period. When the key apple
 pollinators are considered altogether, we found extensive synchrony
 between bee activity and apple peak bloom due to complementarity among bee
 species’ activity periods, and also a stable trend over time due to
 differential responses to warming climate among bee species. A simulation
 model confirms that high biodiversity levels can ensure plant–pollinator
 phenological synchrony and thus pollination function.
description: Historical Bee
 DataThis data comprise
 museum collection records with Date of collection, Latitude and Longitude
 for all species used in the analysis. It also contains the asynchrony
 value with apple peak bloom (see article for details).BartomeusData.csv
DOI: 10.5061/dryad.62t87
title: Data from: Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei)

description: Biogeography of the mega-diverse, freshwater and globally-distributed
 Otophysi has received considerable attention. The attraction largely stems
 from assumptions as its ancient origin, and by being almost exclusively
 freshwater, their suitability as to explanations of trans-oceanic
 distributions. Despite multiple hypotheses explaining present-day
 distributions, problems remain, precluding more parsimonious explanations.
 Underlying previous hypotheses involve alternative phylogenies for
 Otophysi, uncertainties as to temporal diversification and assumptions
 integral to various explanations. We reexamine the origin and early
 diversification of this clade based on a comprehensive time-calibrated,
 molecular-based phylogenetic analysis and event-based approaches for
 ancestral range inference of lineages. Our results do not corroborate
 current phylogenetic classifications of otophysans. We demonstrate
 Siluriformes are never sister to Gymnotiformes and Characiformes are most
 likely non-monophyletic. Divergence-time estimates specify a split between
 Cypriniformes and Characiphysi as a result of fragmentation of Pangea. The
 early diversification of characiphysans either predated, or was
 contemporary with, the separation of Africa and South America, and
 involved a combination of within- and between-continental divergence
 events for these lineages. The inter-continental diversification of
 siluroids and characoids postdated major inter-continental tectonic
 fragmentations (&lt;90Mya). Post-tectonic drift dispersals are
 hypothesized to account for current patterns of distribution of these
 latter two clades.
description: Aligned DNA sequence
 matrix of five nuclear genesAligned DNA sequence
 matrix of five nuclear genes (95 taxa, 4518 positions):Rag1 (positions 1
 to 1452), Rhodopsin (positions 1453 to 2202), EGR1 (positions 2203 to
 2928), EGR2 (positions 2929 to 3753), EGR3 (positions 3754 to
 4518)Otophysi_DNA_95_4518.phy
DOI: 10.5061/dryad.620tg
title: Data from: Revised classification and evolution of leucotrichiine microcaddisflies (Trichoptera: Hydroptilidae) based on morphological and molecular data

description: Hydroptilidae constitute the most diverse caddisfly family, with over 2000
 species known from every habitable continent. Leucotrichiinae are
 exclusively New World microcaddisflies, currently including over 200
 species and 17 genera. Phylogenetic analyses of Leucotrichiinae
 relationships based on 114 morphological characters and 2451 molecular
 characters from DNA sequences were conducted. DNA sequences analysed were
 from one mitochondrial gene, cytochrome oxidase I (653 bp), and four
 nuclear genes, carbamoylphosphate synthase (802 bp), elongation factor 1α
 (352 bp), histone 3 (308 bp) and 28S rDNA (336 bp). The morphological
 matrix included 94 taxa (with representatives of all included genera) and
 the molecular matrix included 62 taxa. Individual and combined datasets
 were analysed under parsimony and Bayesian inference. In addition, a
 relaxed molecular clock divergence time estimate was conducted to
 determine the age of the subfamily and major lineages. All Bayesian
 inference analyses strongly suggest a monophyletic Leucotrichiinae, which
 initially diverged at approximately 124 Ma into two monophyletic groups of
 genera. These groups are herein elevated to tribal status, Alisotrichiini
 trib.n. and Leucotrichiini Flint sensu n. Several genera of Leucotrichiini
 were not recovered as monophyletic clades and some nomenclatural changes
 are proposed to reflect their phylogenetic history. These include the
 synonymy of Abtrichia with Peltopsyche; transfer of Betrichia hamulifera
 to Costatrichia; transfer of Betrichia alibrachia and Costatrichia falsa
 to Leucotrichia; and transfer of Costatrichia fluminensis to
 Acostatrichia. Additionally, Tupiniquintrichia gen.n. is described to
 include Peltopsyche maclachlani and Leucotrichia procera. According to our
 results, crown diversifications of both Alisotrichiini trib.n. (∼80 Ma)
 and Leucotrichiini sensu n. (∼103 Ma) occurred after complete separation
 of South America from Africa. Current distributions of most leucotrichiine
 genera are probably a result of migration from South America towards the
 north using the proto-Caribbean archipelago (100 to 49 Ma).
description: Santos_et_al_Combined_DatasetSantos_et_al_Reduced_Dataset