cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15063063.v1
title: Projected ocean warming constrained by the ocean observational record: supplementary metadata

description: This repository contains data and code used in the following study:<br>Kewei Lyu, Xuebin Zhang, & John A. Church. Projected ocean warming constrained by the ocean observational record. <i>Nature Climate Change</i> (2021)<br>The following items are included: <br><b>data.mat</b><br>% all required data for main figures<br><br><b>Figure_1.m </b><br>% code to plot three panels of Figure 1<br><br><b>Figure_2.m </b><br>% code to plot five panels of Figure 2<br><b>Figure_3.m </b><br>% code to plot two panels of Figure 3 and to derive constrained projections based on emergent constraint methodology<br><br><b>trend.m</b> <br>% code to calculate linear trend (obtained online)<br><br><b>rgb.m</b><b><br></b> % code for colours used in some plots (obtained online)
DOI: 10.5281/zenodo.5503855
title: List of the structures of S-protein in complex with ligands deposited in the Protein Data Bank until the 1st January 2021.

description: All 131 structures of SARS-CoV-2 S-protein in complex with a ligand released on the PDB until the 1<sup>st</sup> January 2021 were categorised by ligand type: hACE2, antibody Fab fragments, VHH antibody fragments or <em>de novo</em> designed peptide scaffolds. The ligands’ amino acid sequences, the method by which the structures were determined and their resolution were retrieved from the PDB. Information regarding the ligands' production method, dissociation constants (K<sub>D</sub>), S-protein segment against which the K<sub>D</sub> were measured and the determination methods were retrieved from the respective references. The categorisation of ligands by S-protein binding site and listing of S-protein conformation in each structure were achieved by visual analysis of all the structures using molecular visualisation software PyMOL.
description: {"references": ["https://www.rcsb.org/", "https://doi.org/10.1093/nar/28.1.235", "PyMOL - The PyMOL Molecular Graphics System, Version 2.0 Schr\u00f6dinger, LLC."]}
DOI: 10.5281/zenodo.5503854
title: List of the structures of S-protein in complex with ligands deposited in the Protein Data Bank until the 1st January 2021.

description: All 131 structures of SARS-CoV-2 S-protein in complex with a ligand released on the PDB until the 1<sup>st</sup> January 2021 were categorised by ligand type: hACE2, antibody Fab fragments, VHH antibody fragments or <em>de novo</em> designed peptide scaffolds. The ligands’ amino acid sequences, the method by which the structures were determined and their resolution were retrieved from the PDB. Information regarding the ligands' production method, dissociation constants (K<sub>D</sub>), S-protein segment against which the K<sub>D</sub> were measured and the determination methods were retrieved from the respective references. The categorisation of ligands by S-protein binding site and listing of S-protein conformation in each structure were achieved by visual analysis of all the structures using molecular visualisation software PyMOL.
description: {"references": ["https://www.rcsb.org/", "https://doi.org/10.1093/nar/28.1.235", "PyMOL - The PyMOL Molecular Graphics System, Version 2.0 Schr\u00f6dinger, LLC."]}
DOI: 10.25375/uct.16610671
title: Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings: dataset

description: Dataset associated with the publication "Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings" in the journal Oecologia. <br>Includes data on UCT-resident Red-winged Starling adult foraging behaviour and diet, nestling provisioning rates and diet, nestling mass and structural size and adult body mass changes in relation to fluctuating human presence on UCT's upper campus. Most data were collected in 2017, some nestling data from 2018.<br><br>
DOI: 10.25375/uct.16610671.v2
title: Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings: dataset

description: Dataset associated with the publication "Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings" in the journal Oecologia. <br>Includes data on UCT-resident Red-winged Starling adult foraging behaviour and diet, nestling provisioning rates and diet, nestling mass and structural size and adult body mass changes in relation to fluctuating human presence on UCT's upper campus. Most data were collected in 2017, some nestling data from 2018.<br><br>
DOI: 10.25375/uct.16610671.v1
title: Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings: dataset

description: Dataset associated with the publication "Pulses of anthropogenic food availability appear to benefit parents, but compromise nestling growth in urban Red-winged Starlings" in the journal Oecologia. <br>Includes data on UCT-resident Red-winged Starling adult foraging behaviour and diet, nestling provisioning rates and diet, nestling mass and structural size and adult body mass changes in relation to fluctuating human presence on UCT's upper campus. Most data were collected in 2017, some nestling data from 2018.<br><br>
DOI: 10.5255/ukda-sn-854599
title: Smart Urban Intermediaries, 2017-2020

description: Qualitative dataset including redacted (anonymised) transcripts of entry and exit interviews in the Smart Urban Intermediaries research project. The purpose of this study was to understand and contribute to the work of people who make a difference in urban neighbourhoods. The UK strand of the project focussed on Birmingham and Glasgow, and this data collection is exclusively from that strand. There were also strands in Amsterdam and Copenhagen, but not funded by ESRC.
DOI: 10.5281/zenodo.5503910
title: Structures of S-protein in complex with ligands deposited in the PDB between the 1st January 2021 and the 13th May 2021

description: All 174 structures of SARS-CoV-2 S-protein in complex with a ligand released on the PDB between the 1<sup>st</sup> January 2021 and the 13<sup>th</sup> May 2021 were categorised by ligand type: hACE2, antibody Fab fragments, VHH antibody fragments or <em>de novo</em> designed peptide scaffolds. Information concerning the method by which the structures were determined and their resolution were retrieved from the PDB. The categorisation of ligands by S-protein binding site were achieved by visual analysis of all the structures using molecular visualisation software PyMOL, in which no new binding sites were found beyond those already categorised for the structures released on the PDB until the 1<sup>st</sup> January 2021 (10.5281/zenodo.5503855). The Pure project is funded by the European Union’s Horizon 2020 program under grant agreement No. 899732.
description: {"references": ["https://www.rcsb.org/", "https://doi.org/10.1093/nar/28.1.235", "PyMOL - The PyMOL Molecular Graphics System, Version 2.0 Schr\u00f6dinger, LLC.", "Carlos Costa, Arm\u00e9nio JM Barbosa, Ana Margarida GC Dias, & Ana Cec\u00edlia A. Roque. (2021). List of the structures of S-protein in complex with ligands deposited in the Protein Data Bank until the 1st January 2021. (1.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5503855"]}
DOI: 10.5281/zenodo.5503909
title: Structures of S-protein in complex with ligands deposited in the PDB between the 1st January 2021 and the 13th May 2021

description: All 174 structures of SARS-CoV-2 S-protein in complex with a ligand released on the PDB between the 1<sup>st</sup> January 2021 and the 13<sup>th</sup> May 2021 were categorised by ligand type: hACE2, antibody Fab fragments, VHH antibody fragments or <em>de novo</em> designed peptide scaffolds. Information concerning the method by which the structures were determined and their resolution were retrieved from the PDB. The categorisation of ligands by S-protein binding site were achieved by visual analysis of all the structures using molecular visualisation software PyMOL, in which no new binding sites were found beyond those already categorised for the structures released on the PDB until the 1<sup>st</sup> January 2021 (10.5281/zenodo.5503855). The Pure project is funded by the European Union’s Horizon 2020 program under grant agreement No. 899732.
description: {"references": ["https://www.rcsb.org/", "https://doi.org/10.1093/nar/28.1.235", "PyMOL - The PyMOL Molecular Graphics System, Version 2.0 Schr\u00f6dinger, LLC.", "Carlos Costa, Arm\u00e9nio JM Barbosa, Ana Margarida GC Dias, & Ana Cec\u00edlia A. Roque. (2021). List of the structures of S-protein in complex with ligands deposited in the Protein Data Bank until the 1st January 2021. (1.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5503855"]}
DOI: 10.34943/23354585-eeff-421f-887d-243f099b8c5f
title: Ucluelet Accelerometer Deployed 2018-03-22

description: The Nanometrics Titan SMA (S/N 000643) was deployed on 2018-03-22 at Ucluelet. Ucluelet is a community on west coast of Vancouver Island. This device is a Accelerometer. Accelerometers are instruments that measure accelerations. Acceleration can be static such as gravity pulling objects toward the earth, or dynamic as caused by oscillatory movements of the instrument. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6073/pasta/17a397cdc899747fc6df754c71c73bee
title: Data for a leaf litter decomposition study and soil density fractionation analysis at a whole-watershed fertilization experiment in a temperate forest

description: To assess how elevated N deposition influences leaf litter decomposition dynamics and soil organic matter formation in a temperate deciduous forest, we coupled a reciprocal transplant leaf litter decomposition study with an analysis of the distribution of soil organic matter in mineral associated and particulate organic matter fractions at a long-term, whole-watershed, N fertilization experiment. We found that nearly 30 years of N additions slowed decay rates by about 11% for leaf litter decomposed in the fertilized watershed, regardless of the watershed from which the initial litter was collected. An apparent consequence of the altered rates of decomposition was that the soil in the fertilized watershed had about a 40% greater fraction of SOM in light particulate organic matter compared to the reference watershed, which was positively correlated with the bulk soil carbon to nitrogen ratio. Collectively, our results suggest that under conditions of N saturation, the physical transfer pathway of SOM formation is favored, which can have important implications for the future of the soil organic matter stock and nutrient cycling.
DOI: 10.6084/m9.figshare.14946309
title: Why the covalent bond is such a complex concept: a conceptual profile proposal

description: The learning process of scientific concepts has been investigated and discussed in several studies in recent decades. However, the understanding of this process may be different depending on the psycho-pedagogical approach adopted. From the perspective of the conceptual profile, the same concept can present more than one mode of thinking and way of speaking, which can then be organised into different zones. In this study, we report a conceptual profile of the covalent bond, which contemplates epistemological and ontological commitments. To this end, we conducted a narrative review of the historical development of the concept, as well as a systematic review of the misconceptions of chemical bond reported in the literature, and applied a questionnaire to a higher education class in Chemistry. The results were compiled in the form of a semantic matrix with nineteen meanings, which was then transformed into four zones: indiscriminate connectivity, stabilising attractiveness, localised remnant, and systematic delocalisation. The proposal contributes to the discussion of the approaches that explain the content under study, specifically in the teaching of chemistry, by considering its polysemy and evolution in the students’ learning. Additionally, it allows the future planning of teaching units and textual analyses.
DOI: 10.6084/m9.figshare.14946309.v2
title: Why the covalent bond is such a complex concept: a conceptual profile proposal

description: The learning process of scientific concepts has been investigated and discussed in several studies in recent decades. However, the understanding of this process may be different depending on the psycho-pedagogical approach adopted. From the perspective of the conceptual profile, the same concept can present more than one mode of thinking and way of speaking, which can then be organised into different zones. In this study, we report a conceptual profile of the covalent bond, which contemplates epistemological and ontological commitments. To this end, we conducted a narrative review of the historical development of the concept, as well as a systematic review of the misconceptions of chemical bond reported in the literature, and applied a questionnaire to a higher education class in Chemistry. The results were compiled in the form of a semantic matrix with nineteen meanings, which was then transformed into four zones: indiscriminate connectivity, stabilising attractiveness, localised remnant, and systematic delocalisation. The proposal contributes to the discussion of the approaches that explain the content under study, specifically in the teaching of chemistry, by considering its polysemy and evolution in the students’ learning. Additionally, it allows the future planning of teaching units and textual analyses.
DOI: 10.6084/m9.figshare.14946309.v1
title: Why the covalent bond is such a complex concept: a conceptual profile proposal

description: The learning process of scientific concepts has been investigated and discussed in several studies in recent decades. However, the understanding of this process may be different depending on the psycho-pedagogical approach adopted. From the perspective of the conceptual profile, the same concept can present more than one mode of thinking and way of speaking, which can then be organised into different zones. In this study, we report a conceptual profile of the covalent bond, which contemplates epistemological and ontological commitments. To this end, we conducted a narrative review of the historical development of the concept, as well as a systematic review of the misconceptions of chemical bond reported in the literature, and applied a questionnaire to a higher education class in Chemistry. The results were compiled in the form of a semantic matrix with nineteen meanings, which was then transformed into four zones: indiscriminate connectivity, stabilising attractiveness, localised remnant, and systematic delocalisation. The proposal contributes to the discussion of the approaches that explain the content under study, specifically in the teaching of chemistry, by considering its polysemy and evolution in the students’ learning. Additionally, it allows the future planning of teaching units and textual analyses.
DOI: 10.6084/m9.figshare.16607912.v1
title: Long–term high–resolution gridded rainfall product for Bangladesh

description: Records of monthly high resolution (0.01°) rainfall, in mm, for Bangladesh from January 1901 to December 2018, are freely available in NetCDF format. The data records spatially, covering the land area of Bangladesh. The records will be updated frequently in the upcoming years when more observed records will be available. Temporal coverage of data may be extended in the future when recent observations are available.<br>The BDGR product can be used for many applications at various temporal resolutions. <br>
DOI: 10.6084/m9.figshare.12656165.v25
title: COVID-19 Case Reports in China

description: Chinese prefectural level governments started to report daily confirmed COVID-19 cases online, starting from January 2020. The disclosures may contain the mobility, potential exposure scenario, epidemiological characteristics, and other useful information of individual cases. We organized a group of content coders since early March 2020, kept monitoring the information updates, manually extracted useful information from the public disclosures, and compiled these datasets.We welcome any form of collaborations with us and non-commercial reuse of our dataset. We highly encourage interested parties to examine the data, report errors in our coding, and help us to keep the data updated.The detailed data description can be found on SSRN preprint server https://dx.doi.org/10.2139/ssrn.3705815.
DOI: 10.5287/bodleian:prqxzwj7n
title: C-MORE brain MRI database
DOI: 10.6084/m9.figshare.9948473
title: Cuestionario de encuesta.pdf

description: Survey Questionnaire. BBC Accessibility
DOI: 10.5281/zenodo.5503948
title: MOREST Experiment Data

description: MOREST experiment data that contains the test results of MOREST vs. 3 other competing methods. The json files are the raw data generated by the tool, which contains the 500 responses corresponding to bugs information.
DOI: 10.5281/zenodo.5501229
title: A database solutions for the type two assembly line balancing problems

description: Assembly Line Balancing Problems have a significant impact on performance of manufacturing systems, specially for the cases of mass production. These problems are widely cited and treated in the literature. One from the most important variants of those problems is the “Task Restrictions Assembly Line Balancing Problem” of type 2. For this problem, a set of tasks need to be affected to a predefined number of stations m from the way that minimises the cycle time and respects a set of constraints related to precedence and compatibility between tasks (Triki et al., 2016). For this variant we suggest an innovative speed and effective approach based on the hybridisation of two powerful tools: the ant colony optimisation and the genetic algorithm. The effectiveness of this approach is evaluated through a set of instances collected from the literature (Thomas, 1990; Triki et al., 2016) . This document presents the best generated solutions for those problems.
description: {"references": ["Thomas, R. H., \"Assembly line balancing: a set of challenging problems\", International Journal of Production Research, vol. 28(10), 1990, pp. 1807-1815, DOI: 10.1080/00207549008942835.", "Triki, H., Mellouli, A., Hachicha, W., Masmoudi, F.,\"A hybrid genetic algorithm approach for solving an extension of assembly line balancing problem\", International Journal of Computer Integrated Manufacturing, vol. 29, 2016, pp. 504\u201319."]}
DOI: 10.5281/zenodo.5501228
title: A database solutions for the type two assembly line balancing problems

description: Assembly Line Balancing Problems have a significant impact on performance of manufacturing systems, specially for the cases of mass production. These problems are widely cited and treated in the literature. One from the most important variants of those problems is the “Task Restrictions Assembly Line Balancing Problem” of type 2. For this problem, a set of tasks need to be affected to a predefined number of stations m from the way that minimises the cycle time and respects a set of constraints related to precedence and compatibility between tasks (Triki et al., 2016). For this variant we suggest an innovative speed and effective approach based on the hybridisation of two powerful tools: the ant colony optimisation and the genetic algorithm. The effectiveness of this approach is evaluated through a set of instances collected from the literature (Thomas, 1990; Triki et al., 2016) . This document presents the best generated solutions for those problems.
description: {"references": ["Thomas, R. H., \"Assembly line balancing: a set of challenging problems\", International Journal of Production Research, vol. 28(10), 1990, pp. 1807-1815, DOI: 10.1080/00207549008942835.", "Triki, H., Mellouli, A., Hachicha, W., Masmoudi, F.,\"A hybrid genetic algorithm approach for solving an extension of assembly line balancing problem\", International Journal of Computer Integrated Manufacturing, vol. 29, 2016, pp. 504\u201319."]}
DOI: 10.6084/m9.figshare.16611343
title: Survey on BBC Accessibility

description: Survey Questionnaire. BBC Accessiblity.
DOI: 10.6084/m9.figshare.16611343.v1
title: Survey on BBC Accessibility

description: Survey Questionnaire. BBC Accessiblity.
DOI: 10.6084/m9.figshare.16602563
title: PR1.fa.gz

description: PR1 v3.0<br>Chromosome level assembly of a Puerto Rican Male Individual FASTA file
DOI: 10.6084/m9.figshare.16602563.v2
title: PR1.fa.gz

description: PR1 v3.0<br>Chromosome level assembly of a Puerto Rican Male Individual FASTA file
DOI: 10.6084/m9.figshare.16602563.v1
title: PR1.fa.gz

description: PR1 v3.0<br>Chromosome level assembly of a Puerto Rican Male Individual FASTA file
DOI: 10.7303/syn26164834
title: From compartments to gene loops: Structure-function relationships within the 3D genome in the human brain
DOI: 10.25402/fsg.16611406
title: Supplementary Table 1. Impact of treatment strategy on overall and cancer-specific survival (among patients with complete information).

description: Supplementary Table 1. Impact of treatment strategy on overall and cancer-specific survival (among patients with complete information).
DOI: 10.25402/fsg.16611406.v1
title: Supplementary Table 1. Impact of treatment strategy on overall and cancer-specific survival (among patients with complete information).

description: Supplementary Table 1. Impact of treatment strategy on overall and cancer-specific survival (among patients with complete information).
DOI: 10.6084/m9.figshare.16611091
title: Data and analyses used in the research paper "Succession in the caecal microbiota of developing broilers colonised by Extended-spectrum β-lactamase-producing Escherichia coli".

description: This item contains the datasets and R-notebooks used for the analysis presented in the research paper "Succession in the caecal microbiota of developing broilers colonised by Extended-spectrum β-lactamase-producing Escherichia coli".<br>
DOI: 10.6084/m9.figshare.16611091.v1
title: Data and analyses used in the research paper "Succession in the caecal microbiota of developing broilers colonised by Extended-spectrum β-lactamase-producing Escherichia coli".

description: This item contains the datasets and R-notebooks used for the analysis presented in the research paper "Succession in the caecal microbiota of developing broilers colonised by Extended-spectrum β-lactamase-producing Escherichia coli".<br>