cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10866538
title: PHACTboost and PHACT predictions

description: Most algorithms that are used to predict the effects of variants rely on evolutionary conservation. However, a majority of such techniques compute evolutionary conservation by solely using the alignment of multiple sequences while overlooking the evolutionary context of substitution events. We had introduced PHACT, a scoring-based pathogenicity predictor for missense mutations that can leverage phylogenetic trees, in our previous study. By building on this foundation, we now propose PHACTboost, a gradient boosting tree-based classifier that combines PHACT scores with information from multiple sequence alignments, phylogenetic trees, and ancestral reconstruction. The results of comprehensive experiments on carefully constructed sets of variants demonstrated that PHACTboost can outperform 40 prevalent pathogenicity predictors reported in the dbNSFP, including conventional tools, meta-predictors, and deep learning-based approaches as well as state-of-the-art tools, AlphaMissense, EVE, and CPT-1. The superiority of PHACTboost over these methods was particularly evident in case of hard variants for which different pathogenicity predictors offered conflicting results. We provide predictions of 215 million amino acid alterations over 20,191 proteins. PHACTboost can improve our understanding of genetic diseases and facilitate more accurate diagnoses.
DOI: 10.15468/dl.21qafm
title: Occurrence Download

description: A dataset containing 1999 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocodylus acutus (Cuvier, 1807)"
 ]
}

 The dataset includes 1999 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002758-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcs56o
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2000-2018",
 "TaxonKey is Procyon lotor fuscipes Mearns, 1914"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016968-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10866537
title: PHACTboost and PHACT predictions

description: Most algorithms that are used to predict the effects of variants rely on evolutionary conservation. However, a majority of such techniques compute evolutionary conservation by solely using the alignment of multiple sequences while overlooking the evolutionary context of substitution events. We had introduced PHACT, a scoring-based pathogenicity predictor for missense mutations that can leverage phylogenetic trees, in our previous study. By building on this foundation, we now propose PHACTboost, a gradient boosting tree-based classifier that combines PHACT scores with information from multiple sequence alignments, phylogenetic trees, and ancestral reconstruction. The results of comprehensive experiments on carefully constructed sets of variants demonstrated that PHACTboost can outperform 40 prevalent pathogenicity predictors reported in the dbNSFP, including conventional tools, meta-predictors, and deep learning-based approaches as well as state-of-the-art tools, AlphaMissense, EVE, and CPT-1. The superiority of PHACTboost over these methods was particularly evident in case of hard variants for which different pathogenicity predictors offered conflicting results. We provide predictions of 215 million amino acid alterations over 20,191 proteins. PHACTboost can improve our understanding of genetic diseases and facilitate more accurate diagnoses.
DOI: 10.5281/zenodo.11281312
title: PHACTboost and PHACT predictions

description: Most algorithms that are used to predict the effects of variants rely on evolutionary conservation. However, a majority of such techniques compute evolutionary conservation by solely using the alignment of multiple sequences while overlooking the evolutionary context of substitution events. We had introduced PHACT, a scoring-based pathogenicity predictor for missense mutations that can leverage phylogenetic trees, in our previous study. By building on this foundation, we now propose PHACTboost, a gradient boosting tree-based classifier that combines PHACT scores with information from multiple sequence alignments, phylogenetic trees, and ancestral reconstruction. The results of comprehensive experiments on carefully constructed sets of variants demonstrated that PHACTboost can outperform 40 prevalent pathogenicity predictors reported in the dbNSFP, including conventional tools, meta-predictors, and deep learning-based approaches as well as state-of-the-art tools, AlphaMissense, EVE, and CPT-1. The superiority of PHACTboost over these methods was particularly evident in case of hard variants for which different pathogenicity predictors offered conflicting results. We provide predictions of 215 million amino acid alterations over 20,191 proteins. PHACTboost can improve our understanding of genetic diseases and facilitate more accurate diagnoses.
DOI: 10.15468/dl.9jtx7r
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelodus pictus Steindachner, 1876"
 ]
}

 The dataset includes 197 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058900-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ttsyd
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Field Museum of Natural History (Zoology) Fish Collection"
 ]
}

 The dataset includes 906 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016969-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oxw4zi
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 69 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002760-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nphd99
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senna pallida var. foliolosa (Benth.) H.S.Irwin & Barneby"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251647-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lwjtcx
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Algansea tincella (Valenciennes, 1844)"
 ]
}

 The dataset includes 537 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006768-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7txion
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arthroleptis bivittatus Müller, 1885"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002760-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dk7zwv
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrullus ecirrhosus Cogn."
 ]
}

 The dataset includes 115 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016976-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujsev5
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Punctelia borreri (Sm.) Krog"
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083656-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txrf37
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bathysa nicholsonii K.Schum.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 110 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002760-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujefea
title: Occurrence Download

description: A dataset containing 2672 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico",
 "Country is Peru"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Sceliphron caementarium (Drury, 1773)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2672 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016979-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.on2fk0
title: Occurrence Download

description: A dataset containing 8017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 45.7149828919316",
 "DecimalLatitude is less than 46.5722777150431",
 "DecimalLongitude is greater than -124.471948938723",
 "DecimalLongitude is less than -123.464143348904"
 ]
}

 The dataset includes 8017 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006768-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngp50a
title: Occurrence Download

description: A dataset containing 9050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 9050 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002761-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9wmfi
title: Occurrence Download

description: A dataset containing 70922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clupea harengus Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70922 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016980-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3t46il
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Drosera collinsiae Brown ex Burtt Davy",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012739-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q1rso5
title: Occurrence Download

description: A dataset containing 749412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 749412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002761-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmg3vv
title: Occurrence Download

description: A dataset containing 20424 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "TaxonKey is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 20424 records from 423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016986-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhtw8h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Month is greater than or equal to October",
 "Country is Australia",
 "TaxonKey is Senecio madagascariensis Poir."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002761-151016162008034/datasets/export for details.
DOI: 10.15468/dl.dlhkm6
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 {
 "or" : [
 "TaxonKey is Lethrinus erythropterus Valenciennes, 1830",
 "TaxonKey is Heterodontus ramalheira (Smith, 1949)",
 "TaxonKey is Breviceps mossambicus Peters, 1854",
 "TaxonKey is Artisornis Friedmann, 1928"
 ]
 }
 ]
}

 The dataset includes 51 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006768-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhjh7d
title: Occurrence Download

description: A dataset containing 10315 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantago lanceolata L."
 ]
}

 The dataset includes 10315 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251891-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzvxka
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Martinique",
 "Country is Guadeloupe",
 "Country is Dominica",
 "Country is Dominican Republic"
 ]
 },
 "TaxonKey is Manekia incurva (Sieber ex Schult.) T.Arias, Callejas & Bornst."
 ]
}

 The dataset includes 65 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016988-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vumrnu
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epiplatys guineensis Romand, 1994"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002761-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djekck
title: Occurrence Download

description: A dataset containing 2587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anthrenus verbasci (Linnaeus, 1767)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2587 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006768-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4f7xw
title: Occurrence Download

description: A dataset containing 15328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coelioxys Latreille, 1809)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 15328 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278944-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85verh
title: Occurrence Download

description: A dataset containing 411427 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia rosmarinus Spenn."
 ]
}

 The dataset includes 411427 records from 818 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103836-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myrhxq
title: Occurrence Download

description: A dataset containing 75356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schoenoplectus tabernaemontani (C.C.Gmel.) Palla"
 ]
}

 The dataset includes 75356 records from 907 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103842-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.366dt7
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carabus vietinghoffii M.Adams, 1812"
 ]
}

 The dataset includes 302 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205341-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e4kpn
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microlicia tomentella Naudin"
 ]
}

 The dataset includes 448 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052758-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-60177
title: Redemption tidings, vol. 41, nos. 1-52, 1 Jan. - 24 Dec. 1965

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.fm59wa
title: Occurrence Download

description: A dataset containing 12008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Year 2005-2015",
 "HasCoordinate is true",
 "TaxonKey is Apidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12008 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059463-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w65wzx
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is Korea, Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is Triticum L."
 ]
}

 The dataset includes 122 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003374-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23d89g
title: Occurrence Download

description: A dataset containing 6504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Tadorna ferruginea (Pallas, 1764)"
 ]
}

 The dataset includes 6504 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003372-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qayqj9
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcorys lenticularis F.Muell."
 ]
}

 The dataset includes 43 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039712-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnvza3
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "Country is United States of America",
 "TaxonKey is Eucheuma denticulatum (N.L.Burman) F.S.Collins & Hervey, 1917"
 ]
}

 The dataset includes 56 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105393-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mz597d
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1990-2020",
 "Geometry POLYGON((-14.85829 35.57083,5.92784 35.57083,5.92784 43.87649,-14.85829 43.87649,-14.85829 35.57083))",
 "HasCoordinate is true",
 "TaxonKey is Myoporum Banks & Sol. ex G.Forst.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 194 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037411-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.