cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3620222_d6.v1
title: Additional file 4: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of genes meeting the criteria used in Rosli et al. 2013 in Fig.Â 2, including the criterion data. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d3.v1
title: Additional file 9: Figure S4. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: No group of genes in this transcriptome are seemingly regulated independently of PTI. A scatterplot where the X coordinate equals induction by D29E pCPP45::avrPto(I96A,2xA) relative to a mock inoculation without bacteria, representing the PTI-induced transcriptome. Only RPKM values were used to select this data set, and there is not a set of genes strongly up- or down-regulated by the CD or CTD combined independently of PTI. (XLS 2504Â kb)
DOI: 10.57724/gdc_20240223_dichoso_water
title: DICHOSO Project: Assessment of spatio-temporal variability of marine biogeochemical variables in waters of Deception Island, 2024
DOI: 10.5281/zenodo.13332868
title: Acquiring musculoskeletal skills with curriculum-based reinforcement learning - model weights

description: Acquiring musculoskeletal skills with curriculum-based reinforcement learning, Neuron 2024

Here we provide the weights of the neural network policies used for the analysis presented in our article.

The archives whose names start with a number (01 - 32) correspond to the 32 curriculum steps to train the Baoding Balls policy which ranked first at the MyoChallenge 2022. The code used for the training and which can be used to test the policies can be found at https://github.com/amathislab/myochallenge.

The archives hand_pose, hand_reach, pen and reorient correspond to the other policies used in the article. They were developed in the paper Latent exploration for reinforcement learning, Chiappa et al., NeurIPS 2023. They can be loaded and tested with the code at https://github.com/amathislab/lattice.

The archive datasets includes three subfolders: rollouts, umap and csi.



The files in rollouts are the datasets of transitions resulting from the interaction between a policy and the environment. 

The files in umap are the pre-computed projections of specific subsets fo the datasets included in rollouts using UMAP.

The files in csi report the performance of the policies described in our paper when applying Control Subspace Inactivation (CSI).


These datasets are necessary to run the notebooks to reproduce the paper's figures and main results, with the code at https://github.com/amathislab/MyoChallengeAnalysis

If you find these weights useful, please cite:



@article{chiappa2024acquiring,title = {Acquiring musculoskeletal skills with curriculum-based reinforcement learning},journal = {Neuron},volume = {112},number = {23},pages = {3969-3983.e5},year = {2024},issn = {0896-6273},doi = {https://doi.org/10.1016/j.neuron.2024.09.002},url = {https://www.sciencedirect.com/science/article/pii/S0896627324006500},author = {Alberto Silvio Chiappa and Pablo Tano and Nisheet Patel and Abigaïl Ingster and Alexandre Pouget and Alexander Mathis},keywords = {motor control, motor learning, reinforcement learning, curriculum learning, motor skills, musculoskeletal control, muscle synergies},}

 

@article{chiappa2024latent,

title={Latent exploration for reinforcement learning},

author={Chiappa, Alberto Silvio and Marin Vargas, Alessandro and Huang, Ann and Mathis, Alexander},

journal={Advances in Neural Information Processing Systems},

volume={36},

year={2024}

}
DOI: 10.5281/zenodo.13753695
title: Acquiring musculoskeletal skills with curriculum-based reinforcement learning - model weights

description: Acquiring musculoskeletal skills with curriculum-based reinforcement learning, Neuron 2024

Here we provide the weights of the neural network policies used for the analysis presented in our article.

The archives whose names start with a number (01 - 32) correspond to the 32 curriculum steps to train the Baoding Balls policy which ranked first at the MyoChallenge 2022. The code used for the training and which can be used to test the policies can be found at https://github.com/amathislab/myochallenge.

The archives hand_pose, hand_reach, pen and reorient correspond to the other policies used in the article. They were developed in the paper Latent exploration for reinforcement learning, Chiappa et al., NeurIPS 2023. They can be loaded and tested with the code at https://github.com/amathislab/lattice.

The archive datasets includes three subfolders: rollouts, umap and csi.



The files in rollouts are the datasets of transitions resulting from the interaction between a policy and the environment. 

The files in umap are the pre-computed projections of specific subsets fo the datasets included in rollouts using UMAP.

The files in csi report the performance of the policies described in our paper when applying Control Subspace Inactivation (CSI).


These datasets are necessary to run the notebooks to reproduce the paper's figures and main results, with the code at https://github.com/amathislab/MyoChallengeAnalysis

If you find these weights useful, please cite:



@article{chiappa2024acquiring,title = {Acquiring musculoskeletal skills with curriculum-based reinforcement learning},journal = {Neuron},volume = {112},number = {23},pages = {3969-3983.e5},year = {2024},issn = {0896-6273},doi = {https://doi.org/10.1016/j.neuron.2024.09.002},url = {https://www.sciencedirect.com/science/article/pii/S0896627324006500},author = {Alberto Silvio Chiappa and Pablo Tano and Nisheet Patel and Abigaïl Ingster and Alexandre Pouget and Alexander Mathis},keywords = {motor control, motor learning, reinforcement learning, curriculum learning, motor skills, musculoskeletal control, muscle synergies},}

 

@article{chiappa2024latent,

title={Latent exploration for reinforcement learning},

author={Chiappa, Alberto Silvio and Marin Vargas, Alessandro and Huang, Ann and Mathis, Alexander},

journal={Advances in Neural Information Processing Systems},

volume={36},

year={2024}

}
DOI: 10.15468/dl.8mmm8q
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lates calcarifer (Bloch, 1790)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036114-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619904_d5.v1
title: Additional file 2: Table S2. of Analysis of gene expression in the midgut of Bombyx mori during the larval molting stage

description: Genes identified by microarray analysis. (XLS 205 kb)
DOI: 10.6084/m9.figshare.c.3619910_d3.v1
title: Additional file 2: of An evaluation of processing methods for HumanMethylation450 BeadChip data

description: Number of samples in TCGA-KIRC, TCGA-COAD, and Alzheimerâ  s disease brain data assigned to Discovery and Validation data sets by disease status and plate. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3619904_d3.v1
title: Additional file 1: Table S1. of Analysis of gene expression in the midgut of Bombyx mori during the larval molting stage

description: Primers used for real-time PCR assay. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3619910_d1.v1
title: Additional file 1: of An evaluation of processing methods for HumanMethylation450 BeadChip data

description: Summary of preprocessing methods used in this study. (XLSX 44 kb)
DOI: 10.15468/dl.vtq5qa
title: Occurrence Download

description: A dataset containing 26440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Vitellaria paradoxa C.F.Gaertn.",
 "Year 1950-2024"
 ]
}

 The dataset includes 26440 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036115-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619856_d13.v1
title: Additional file 3: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Differentially expressed genes between the brains of Hybrid F1 and paternal E. lanceolatus. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3619856_d11.v1
title: Additional file 12: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: GO enrichment of DEGs between the brains of Hybrid F1 and paternal E. lanceolatus. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3619856_d10.v1
title: Additional file 4: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Differentially expressed genes between the livers of Hybrid F1 and maternal E. fuscoguttatus. (XLSX 460 kb)
DOI: 10.6084/m9.figshare.c.3619856_d8.v1
title: Additional file 11: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: GO enrichment of DEGs between the brains of Hybrid F1 and maternal E. fuscoguttatus. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3619856_d9.v1
title: Additional file 9: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: GO enrichment of DEGs between the livers of Hybrid F1 and maternal E. fuscoguttatus. (XLSX 309 kb)
DOI: 10.6084/m9.figshare.c.3619856_d7.v1
title: Additional file 5: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Differentially expressed genes between the livers of Hybrid F1 and paternal E. lanceolatus. (XLSX 595 kb)
DOI: 10.6084/m9.figshare.c.3619856_d5.v1
title: Additional file 13: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Sequences of the primers used for real-time RT-PCR and related gene sequences. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3619856_d4.v1
title: Additional file 10: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: GO enrichment of DEGs between the livers of Hybrid F1 and paternal E. lanceolatus. (XLSX 464 kb)
DOI: 10.15468/dl.gqt5bw
title: Occurrence Download

description: A dataset containing 739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is DEU",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coronella austriaca Laurenti, 1768"
 ]
}

 The dataset includes 739 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036116-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kukwqv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labrax japonicus Cuvier, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036117-241126133413365/datasets/export for details.
DOI: 10.15468/dl.vja5tv
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Zostera noltii Hornem."
 ]
}

 The dataset includes 489 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036118-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whn7q3
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Zostera nana Roth"
 ]
}

 The dataset includes 28 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036119-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619517_d4.v1
title: Additional file 3: Table S3. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model predicting overall survival using platelet-lymphocyte- ratio (PLR). (XLSX 11 kb)
DOI: 10.17203/kdk632
title: A szociális ellátórendszer minőségének vizsgálata
DOI: 10.6084/m9.figshare.c.3619517_d2.v1
title: Additional file 4: Table S4. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model predicting overall survival using neutrophil-lymphocyte-ratio (NLR). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619517_d3.v1
title: Additional file 1: Table S1. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model 2 predicting overall survival using platelet-lymphocyte- ratio (PLR). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619517_d1.v1
title: Additional file 2: Table S2. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model 2 predicting overall survival using neutrophil-lymphocyte-ratio (NLR). (XLSX 11 kb)
DOI: 10.15468/dl.8ug7eb
title: Occurrence Download

description: A dataset containing 211910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "Geometry POLYGON((72.20362 1.68629,128.79638 1.68629,128.79638 24.31371,72.20362 24.31371,72.20362 1.68629))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 211910 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036077-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10215134
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.fp2dfh
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limanda punctatissima (Steindachner, 1879)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036120-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619262_d5.v1
title: Additional file 3: Table S2. of Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development

description: Orthologous PMEs gene pairs of G. arboreum and G. raimondii. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3619253_d4.v1
title: Additional file 1: Table S1. of Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions

description: Molecular markers developed for fine mapping of qDPS10 on chromosome 10. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3619253_d3.v1
title: Additional file 2: Table S5. of Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions

description: Primers used for validating differentially expressed genes and the identities of the co-expressed genes related to stress tolerance in HZ4 and HZ4-NIL. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3619253_d2.v1
title: Additional file 8: Table S4. of Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions

description: Cis-acting regulatory elements identified in the promoter regions of genes in the nodes of the co-expression network. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3619262_d2.v1
title: Additional file 4: Table S3. of Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development

description: Orthologous PMEs gene pairs of the three cotton species. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3619169_d2.v1
title: Additional file 1: Table S1. of Effect of prenatal DHA supplementation on the infant epigenome: results from a randomized controlled trial

description: Global DNA methylation levels at birth across all probes by genomic location. Table S2. Variable methylated regions (VMRs) at birth. Table S3. DMRs between the DHA-supplemented and control group at birth with adjustment for cell mixture. Table S4. DMRs between the DHA-supplemented and control group at birth in males. Table S5. DMRs between the DHA-supplemented and control group at birth in females. Table S6. DMRs between the DHA-supplemented and control group at age 5 years. Table S7. DMRs between the DHA-supplemented and control group at age 5 years in males. Table S8. DMRs between the DHA-supplemented and control group at age 5 years in females. (XLSX 476 kb)
DOI: 10.21227/c5yg-ys33
title: RiPAMI

description: To ensure reproducible experiments and prevent overburdening the server, we construct an SQL-based database dubbed RiPAMI (Reviews in Pattern Analysis and Machine Intelligence, pronounced as \textipa{/ri:p\ae mi/}). This database stores information related to the paper such as title, abstract, date of publication, venue, citation counts, and reference details, etc. From initial keyword selection to the final SQL-based RiPAMI snapshot, three key steps are implemented to ensure the data in RiPAMI is clean, accurate, and reliable. For simplicity, the polar diagram shows only a subset of the keywords used for retrieval. Since citation counts fluctuate over time, the retrieval date for related information is set to October 2024.
DOI: 10.15468/dl.675xc2
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neophocaena phocaenoides (G.Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036121-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619055_d3.v1
title: Additional file 2: Figure S2. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: The effects of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 on cell positioning and cortical identity. (ZIP 2329Â kb)
DOI: 10.6084/m9.figshare.c.3619055_d1.v1
title: Additional file 1: Figure S1. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: Kctd13 and Tnfaip1 are putative interacting partners to Rnd2 and Rnd3 which are expressed in mouse and human tissues. (ZIP 322Â kb)
DOI: 10.6084/m9.figshare.c.3619055_d2.v1
title: Additional file 3: Figure S3. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: Analysis of dendritic branching in layer II/III projection neurons of the postnatal P17 cortex. (PDF 650Â kb)
DOI: 10.6084/m9.figshare.c.3619028_d2.v1
title: Additional file 2: Table S1A. of Proteome profiling reveals insights into cold-tolerant growth in sea buckthorn

description: The identified protein summary of H. rhamnoides cv. ‘Chuisk’ responding to low-temperature stress using MALDI-TOF-TOF. Table S1B. The identified protein detail of H. rhamnoides cv. ‘Chuisk’ responding to low-temperature stress using MALDI-TOF-TOF. Table S2. GO enrichment terms under low-temperature stress with Arabidopsis thaliana homologues using GOEAST. Table S3. KEGG pathways of protein spots under low-temperature stress. Table S4. Primers used for detecting the gene expression by reverse real-time PCR. (XLS 171 kb)
DOI: 10.6084/m9.figshare.c.3619004_d11.v1
title: Additional file 9: Table S21. of Transcriptional maturation of the mouse auditory forebrain

description: Read counts for genes in all HUGO gene families. Normalized read counts for 19,826 genes in all HUGO gene families currently listed in that resource, listed alphabetically by gene family. Source: HUGO Gene Families database, HUGO Gene Nomenclature Committee at the European Bioinformatics Institute ( http://www.genenames.org ). Table S22. Gene set enrichment analysis of 111 HUGO gene families. Genesets are listed by functional group and family (from Table S21). For each geneset, the number of genes (Size), false discovery rate (FDR q-value), and direction of expression (up, down) are listed. Shading denotes gene families enriched above the 25Â % FDR cutoff. Table S23. Normalized read counts for genes in selected gene ontology (GO) categories from the MGI database. Genes are arranged alphabetically by GO category, along with gene symbols, names, and annotations. Source: Mouse Genome Informatics (MGI) Gene Ontology Browser, Jackson Laboratories ( www.informatics.jax.org ). Table S24. Gene set enrichment analysis of the 51 gene ontology categories. Genesets are listed by functional group and GO designation (from Table S23). For each geneset, the number of genes (Size), false discovery rate (FDR q-value), and direction of expression (up, down) are listed. Shading denotes categories enriched above 25Â % FDR cutoff.
DOI: 10.6084/m9.figshare.c.3619004_d10.v1
title: Additional file 10: Table S25. of Transcriptional maturation of the mouse auditory forebrain

description: Gene families database. Normalized read counts and plots of ~4700 genes in 237 gene families from the HUGO database. Gene families are grouped by 20 functional categories arranged in tabs. For each family, normalized read counts (mean and % of maximum) are provided for A1 and MG as a function of postnatal age to permit rapid screening of the relationships between genes by brain region and age.