cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5418799
title: Supplementary Material for: Are All Amplitude-Integrated Electroencephalogram Systems Equal?

description: <b><i>Background:</i></b> Filter and peak detection algorithms implemented in amplitude-integrated electroencephalogram (aEEG) systems are not standardized. New aEEG systems are continuously enriching the market and clinicians are faced with different aEEG devices whose tracings may vary. <b><i>Objectives:</i></b> The aim of this work was to determine the role of different aEEG systems on quantitative measurements of the aEEG. <b><i>Methods:</i></b> In this observational study, a single-channel aEEG recording (Olympic CFM 6000) with corresponding EEG signal was obtained from 32 infants at a gestational age of 36-44 weeks. The signals were split into 334 episodes of 4 h. New aEEG tracings were generated using the NicoletOne Reader Software and aEEG emulations with varying filter profiles and peak detection settings. The aEEG amplitude margins and automated annotation of continuous normal voltage (CNV) were compared. <b><i>Results:</i></b> The output of the Olympic and the NicoletOne systems are very similar but not identical; the Spearman rank correlations of the aEEG amplitude margins exceeded 0.9 and the differences in the lower and upper amplitude margins were 1.55 μV (SD 1.47) and -2.12 μV (SD 1.44) on average (<i>n</i> = 309), respectively. The aEEG emulation showed that the differences between the output of the Olympic and the NicoletOne system could be primarily ascribed to the peak detection algorithm. The differences in output can affect automated analyses with agreement rates in CNV detection of 76% (<i>n</i> = 32, positive) and 92% (<i>n</i> = 32, negative) when comparing the Olympic to the NicoletOne outputs. <b><i>Conclusions:</i></b> Commercial aEEG systems have similar but not identical outputs. Care is advised when interpreting automated aEEG classifications across different devices.
DOI: 10.6084/m9.figshare.5418841
title: Julia codes for "Spatial memory shapes density dependence in population dynamics"

description: Here are provided all Julia functions (v 0.3.9) necessary to run the model presented in Riotte-Lambert, L., Benhamou, S., Bonenfant, C. and S. Chamaillé-Jammes. 2017. Spatial memory shapes density dependence in population dynamics<i>. Proceedings of the Royal Society B </i>20171411<i>. </i>http://dx.doi.org/10.1098/rspb.2017.1411<i><br><br></i>Open "exampleRun.jl" to run the model with default parameters.<i><br><br></i>All details on the inputs and outputs of the functions are given as comments in the Julia scripts.<br><br><i>Quick description (see the article for more details)</i><br>To understand the extent to which memory-based foraging movements may affect density-dependent population dynamics through its impact on competition, we developed a spatially-explicit, individual-based movement model where reproduction and death are functions of foraging efficiency.<br><br><i><br><br></i>
DOI: 10.6084/m9.figshare.5418841.v1
title: Julia codes for "Spatial memory shapes density dependence in population dynamics"

description: Here are provided all Julia functions (v 0.3.9) necessary to run the model presented in Riotte-Lambert, L., Benhamou, S., Bonenfant, C. and S. Chamaillé-Jammes. 2017. Spatial memory shapes density dependence in population dynamics<i>. Proceedings of the Royal Society B </i>20171411<i>. </i>http://dx.doi.org/10.1098/rspb.2017.1411<i><br><br></i>Open "exampleRun.jl" to run the model with default parameters.<i><br><br></i>All details on the inputs and outputs of the functions are given as comments in the Julia scripts.<br><br><i>Quick description (see the article for more details)</i><br>To understand the extent to which memory-based foraging movements may affect density-dependent population dynamics through its impact on competition, we developed a spatially-explicit, individual-based movement model where reproduction and death are functions of foraging efficiency.<br><br><i><br><br></i>
DOI: 10.6084/m9.figshare.5418751
title: Experimental design-based isotope-dilution SPME-GC/MS method development for the analysis of smoke flavouring products

description: For the implementation of Regulation (EC) No 2065/2003 related to smoke flavourings used or intended for use in or on foods a method based on solid-phase micro extraction (SPME) GC/MS was developed for the characterisation of liquid smoke products. A statistically based experimental design (DoE) was used for method optimisation. The best general conditions to quantitatively analyse the liquid smoke compounds were obtained with a polydimethylsiloxane/divinylbenzene (PDMS/DVB) fibre, 60°C extraction temperature, 30 min extraction time, 250°C desorption temperature, 180 s desorption time, 15 s agitation time, and 250 rpm agitation speed. Under the optimised conditions, 119 wood pyrolysis products including furan/pyran derivatives, phenols, guaiacol, syringol, benzenediol, and their derivatives, cyclic ketones, and several other heterocyclic compounds were identified. The proposed method was repeatable (RSD% &lt;5) and the calibration functions were linear for all compounds under study. Nine isotopically labelled internal standards were used for improving quantification of analytes by compensating matrix effects that might affect headspace equilibrium and extractability of compounds. The optimised isotope dilution SPME-GC/MS based analytical method proved to be fit for purpose, allowing the rapid identification and quantification of volatile compounds in liquid smoke flavourings.
DOI: 10.6084/m9.figshare.5418751.v1
title: Experimental design-based isotope-dilution SPME-GC/MS method development for the analysis of smoke flavouring products

description: For the implementation of Regulation (EC) No 2065/2003 related to smoke flavourings used or intended for use in or on foods a method based on solid-phase micro extraction (SPME) GC/MS was developed for the characterisation of liquid smoke products. A statistically based experimental design (DoE) was used for method optimisation. The best general conditions to quantitatively analyse the liquid smoke compounds were obtained with a polydimethylsiloxane/divinylbenzene (PDMS/DVB) fibre, 60°C extraction temperature, 30 min extraction time, 250°C desorption temperature, 180 s desorption time, 15 s agitation time, and 250 rpm agitation speed. Under the optimised conditions, 119 wood pyrolysis products including furan/pyran derivatives, phenols, guaiacol, syringol, benzenediol, and their derivatives, cyclic ketones, and several other heterocyclic compounds were identified. The proposed method was repeatable (RSD% &lt;5) and the calibration functions were linear for all compounds under study. Nine isotopically labelled internal standards were used for improving quantification of analytes by compensating matrix effects that might affect headspace equilibrium and extractability of compounds. The optimised isotope dilution SPME-GC/MS based analytical method proved to be fit for purpose, allowing the rapid identification and quantification of volatile compounds in liquid smoke flavourings.
DOI: 10.6084/m9.figshare.5418688.v1
title: Cu+-catalyzed addition of electron-deficient azides to iodoalkynes

description: Inputs, outputs and orbitals for the species present in the Cu+-catalyzed addition of electron-deficient azides to iodoalkynes, discussed in:<br><br>Silva and Bernardo (2017) The reaction mechanism of the Cu+-catalyzed addition of azides to iodoalkynes. (in preparation)<br>Other data reproted in the same paper have been uploaded to<br>https://doi.org/10.6084/m9.figshare.5035682<br>https://doi.org/10.6084/m9.figshare.5165878<br><br>Each file is labelled according to the following table, depending on the specific iodoalkyne/azide combination present<br><br>Q CH3-CC-I and CF3N3<br>R CF3-CC-I and CF3N3<br>S CH3CH2-CC-I and CF3N3<br>T Ph-CC-I and CF3N3<br>U CH3-CC-I and p-NO2-PhN3<br>V CF3-CC-I and p-NO2-PhN3<br>W CH3CH2-CC-I and p-NO2-PhN3<br>X Ph-CC-I and p-NO2-PhN3
DOI: 10.6084/m9.figshare.5418688.v2
title: Cu+-catalyzed addition of electron-deficient azides to iodoalkynes

description: Inputs, outputs and orbitals for the species present in the Cu+-catalyzed addition of electron-deficient azides to iodoalkynes, discussed in:<br><br>Silva and Bernardo (2017) The reaction mechanism of the Cu+-catalyzed addition of azides to iodoalkynes. (in preparation)<br>Other data reproted in the same paper have been uploaded to<br>https://doi.org/10.6084/m9.figshare.5035682<br>https://doi.org/10.6084/m9.figshare.5165878<br><br>Each file is labelled according to the following table, depending on the specific iodoalkyne/azide combination present<br><br>Q CH3-CC-I and CF3N3<br>R CF3-CC-I and CF3N3<br>S CH3CH2-CC-I and CF3N3<br>T Ph-CC-I and CF3N3<br>U CH3-CC-I and p-NO2-PhN3<br>V CF3-CC-I and p-NO2-PhN3<br>W CH3CH2-CC-I and p-NO2-PhN3<br>X Ph-CC-I and p-NO2-PhN3
DOI: 10.6084/m9.figshare.5418634
title: High-technology augmentative and alternative communication for individuals with intellectual and developmental disabilities and complex communication needs: a meta-analysis

description: The use of mobile technology is ubiquitous in modern society and is rapidly increasing in novel use. The use of mobile devices and software applications (“apps”) as augmentative and alternative communication (AAC) is rapidly expanding in the community, and this is also reflected in the research literature. This article reports the social-communication outcome results of a meta-analysis of single-case experimental research on the use of high-tech AAC, including mobile devices, by individuals with intellectual and developmental disabilities, including autism spectrum disorder. Following inclusion determination, and excluding studies with poor design quality, raw data from 24 publications were extracted and included 89 A-B phase contrasts. Tau-U nonparametric, non-overlap effect size was used to aggregate the results across all studies for an omnibus and moderator analyses. Kendall’s S was calculated for confidence intervals, <i>p</i>-values, and standard error. The omnibus analysis indicated overall low to moderate positive effects on social-communication outcomes for high-tech AAC use by individuals with intellectual and developmental disabilities.
DOI: 10.6084/m9.figshare.5418634.v1
title: High-technology augmentative and alternative communication for individuals with intellectual and developmental disabilities and complex communication needs: a meta-analysis

description: The use of mobile technology is ubiquitous in modern society and is rapidly increasing in novel use. The use of mobile devices and software applications (“apps”) as augmentative and alternative communication (AAC) is rapidly expanding in the community, and this is also reflected in the research literature. This article reports the social-communication outcome results of a meta-analysis of single-case experimental research on the use of high-tech AAC, including mobile devices, by individuals with intellectual and developmental disabilities, including autism spectrum disorder. Following inclusion determination, and excluding studies with poor design quality, raw data from 24 publications were extracted and included 89 A-B phase contrasts. Tau-U nonparametric, non-overlap effect size was used to aggregate the results across all studies for an omnibus and moderator analyses. Kendall’s S was calculated for confidence intervals, <i>p</i>-values, and standard error. The omnibus analysis indicated overall low to moderate positive effects on social-communication outcomes for high-tech AAC use by individuals with intellectual and developmental disabilities.
DOI: 10.6084/m9.figshare.5418622
title: DMTS is an effective treatment in both inhalation and injection models for cyanide poisoning using unanesthetized mice

description: <b>Context:</b> Cyanide (CN) is a metabolic poison, halting ATP synthesis by inhibiting complex IV of the electron transport chain. If exposed at high enough concentrations, humans and most animals can die within minutes. Because time is a crucial factor in survival of CN poisoning, a rapidly bioavailable, nontoxic, easy to administer CN medical countermeasure could improve morbidity/mortality in a mass CN exposure scenario. The most likely route of exposure to CN is via inhalation. <b>Objective:</b> This study examined the efficacy of a new formulation for dimethyl trisulfide (DMTS), a countermeasure which has shown promise as a treatment for CN poisoning, using both inhalation and injection models of CN exposure. <b>Methods:</b> We developed a model of acute CN inhalation intoxication, using the highly toxic agent system from CH Technologies for nose-only exposure. Both continuous and discontinuous HCN exposure paradigms were implemented. For comparison, we also utilized a potassium cyanide (KCN) injection model. In all experiments, DMTS was administered as a cyanide countermeasure via intramuscular injection in unanesthetized mice. <b>Results:</b> We found DMTS administration to be highly protective against both subcutaneous KCN and HCN inhalation toxicity. In the KCN injection model, DMTS afforded protection against 3.73 times the LD50 dose of KCN. In our HCN inhalation exposure model, mice challenged with LC50 HCN doses for the duration of either 10- or 40-minute exposure paradigms demonstrated improved survival in the presence of DMTS treatment (87.5% and 90.0% survival, respectively). Animals in the DMTS treatment groups of both lethal exposure models similarly exhibited improvement in observed toxic signs. <b>Conclusion:</b> We show that a newly developed formulation of DMTS is efficacious within two lethal CN exposure mouse models (inhalation and injection) and is highly effective by intramuscular injection. Within these HCN studies, we demonstrate efficacy of DMTS in both continuous and discontinuous inhalation exposure models.
DOI: 10.6084/m9.figshare.5418622.v1
title: DMTS is an effective treatment in both inhalation and injection models for cyanide poisoning using unanesthetized mice

description: <b>Context:</b> Cyanide (CN) is a metabolic poison, halting ATP synthesis by inhibiting complex IV of the electron transport chain. If exposed at high enough concentrations, humans and most animals can die within minutes. Because time is a crucial factor in survival of CN poisoning, a rapidly bioavailable, nontoxic, easy to administer CN medical countermeasure could improve morbidity/mortality in a mass CN exposure scenario. The most likely route of exposure to CN is via inhalation. <b>Objective:</b> This study examined the efficacy of a new formulation for dimethyl trisulfide (DMTS), a countermeasure which has shown promise as a treatment for CN poisoning, using both inhalation and injection models of CN exposure. <b>Methods:</b> We developed a model of acute CN inhalation intoxication, using the highly toxic agent system from CH Technologies for nose-only exposure. Both continuous and discontinuous HCN exposure paradigms were implemented. For comparison, we also utilized a potassium cyanide (KCN) injection model. In all experiments, DMTS was administered as a cyanide countermeasure via intramuscular injection in unanesthetized mice. <b>Results:</b> We found DMTS administration to be highly protective against both subcutaneous KCN and HCN inhalation toxicity. In the KCN injection model, DMTS afforded protection against 3.73 times the LD50 dose of KCN. In our HCN inhalation exposure model, mice challenged with LC50 HCN doses for the duration of either 10- or 40-minute exposure paradigms demonstrated improved survival in the presence of DMTS treatment (87.5% and 90.0% survival, respectively). Animals in the DMTS treatment groups of both lethal exposure models similarly exhibited improvement in observed toxic signs. <b>Conclusion:</b> We show that a newly developed formulation of DMTS is efficacious within two lethal CN exposure mouse models (inhalation and injection) and is highly effective by intramuscular injection. Within these HCN studies, we demonstrate efficacy of DMTS in both continuous and discontinuous inhalation exposure models.
DOI: 10.6084/m9.figshare.5418604
title: Supplementary Material for: Why Do Students Engage in Elective Courses on Acupuncture and Homeopathy at Medical School A Survey

description: Background: We aimed to investigate why medical studentsin Germany participate in elective courses on acupuncture orhomeopathy. Methods: The study was a nationwide, crosssectional survey. Elective courses on acupuncture and homeopathy in the academic half-year 2013/14 were identified by inquiries directed to all 37 German medical schools, to student initiatives, and organizations supporting such courses. Participants of courses were asked to fill in a questionnaire consisting of a free-text question on their motives and closed questions regarding personal experiences, personal environment, evidence, role of the therapy as a complement to conventional medicine, and opportunistic aspects in relation to the therapy chosen. Results: Students participating in 16 of 18 identified acupuncture courses (n = 220) and 12 of 13 identifiedhomeopathy courses (n = 113) filled in the questionnaire.Content analysis of the free text showed that personal experience, a feeling that conventional medicine is somehow incomplete, the belief that acupuncture or homeopathy couldhelp to overcome this shortcoming, and positive characteristics attributed to the therapies were the main motives for participation. Quantitative analyses showed that own experiences and considering the therapy a useful complement to conventional medicine were similarly rated motives in both groups, while opportunistic aspects played almost no role. The influence of the personal environment was more important among homeopathy students, while acupuncture students considered their therapy better backed by evidence. Conclusion: In our survey, personal experiences and the belief that acupuncture or homeopathy allows grasping the patient more holistically were primary motives for participation.
DOI: 10.6084/m9.figshare.5418595
title: Data set for Cartwright and Lovett (2014)

description: Data set for paper Cartwright, E. and D. Lovett (2014) 'Conditional cooperation and the marginal per-capita return in public good games', Games 5:234-256.
DOI: 10.6084/m9.figshare.5418604.v1
title: Supplementary Material for: Why Do Students Engage in Elective Courses on Acupuncture and Homeopathy at Medical School A Survey

description: Background: We aimed to investigate why medical studentsin Germany participate in elective courses on acupuncture orhomeopathy. Methods: The study was a nationwide, crosssectional survey. Elective courses on acupuncture and homeopathy in the academic half-year 2013/14 were identified by inquiries directed to all 37 German medical schools, to student initiatives, and organizations supporting such courses. Participants of courses were asked to fill in a questionnaire consisting of a free-text question on their motives and closed questions regarding personal experiences, personal environment, evidence, role of the therapy as a complement to conventional medicine, and opportunistic aspects in relation to the therapy chosen. Results: Students participating in 16 of 18 identified acupuncture courses (n = 220) and 12 of 13 identifiedhomeopathy courses (n = 113) filled in the questionnaire.Content analysis of the free text showed that personal experience, a feeling that conventional medicine is somehow incomplete, the belief that acupuncture or homeopathy couldhelp to overcome this shortcoming, and positive characteristics attributed to the therapies were the main motives for participation. Quantitative analyses showed that own experiences and considering the therapy a useful complement to conventional medicine were similarly rated motives in both groups, while opportunistic aspects played almost no role. The influence of the personal environment was more important among homeopathy students, while acupuncture students considered their therapy better backed by evidence. Conclusion: In our survey, personal experiences and the belief that acupuncture or homeopathy allows grasping the patient more holistically were primary motives for participation.
DOI: 10.6084/m9.figshare.5418577
title: Playbacks and response to modified feathers

description: Audio files of the playbacks used in our experiment testing the role of the P8 feather in communicating alarm, along with a datasheet tracking the response to the playback and associated variables. We also include R code parts of which were used in the analysis of results and the generation of figures.
DOI: 10.6084/m9.figshare.5418595.v1
title: Data set for Cartwright and Lovett (2014)

description: Data set for paper Cartwright, E. and D. Lovett (2014) 'Conditional cooperation and the marginal per-capita return in public good games', Games 5:234-256.
DOI: 10.6084/m9.figshare.5418568
title: Coordination of wings and sound

description: Datasheets for comparing acoustic and video information about wing-beat cycle and note-cycle of the crested pigeon take-off and accompanying alarm. Includes R code for comparing and analysing these two sources of information and generating the polar plots. Also includes a datasheet estimating wing-tip velocities under a simplified sinusoidal model.
DOI: 10.6084/m9.figshare.5418571
title: Feathers, removal, and note production

description: Datasheets containing, feather removal data, acoustic measurements of recordings from the feather removal experiment, along with accompanying code for processing and analysis. Also contains banding database information.
DOI: 10.6084/m9.figshare.5418562
title: Feather Measurements and photographs

description: Photos and measurements taken from live Crested pigeons and taxidermic specimens of related species taken from the National Wildlife Collection at CSIRO in Crace, ACT. Specimin IDs are included for all taxidermic photos and measurements in the measurements spreadsheet. Translations of species codes are available in Fig. S1 of the manuscript.
DOI: 10.6084/m9.figshare.5418565
title: 3D reconstructions of flight performance

description: Video and data files for the 3D flight paths of crested pigeon take-offs under two treatments, routine and prompted. Take-offs have stereoscopic pairs of .pos files: 3D coordinates which track the pigeons heard through each frame its position was recorded. Matlab code for managing and generating the flight paths is included. R code for analysing and plotting the data is included.
DOI: 10.6084/m9.figshare.5418562.v1
title: Feather Measurements and photographs

description: Photos and measurements taken from live Crested pigeons and taxidermic specimens of related species taken from the National Wildlife Collection at CSIRO in Crace, ACT. Specimin IDs are included for all taxidermic photos and measurements in the measurements spreadsheet. Translations of species codes are available in Fig. S1 of the manuscript.
DOI: 10.6084/m9.figshare.5418565.v1
title: 3D reconstructions of flight performance

description: Video and data files for the 3D flight paths of crested pigeon take-offs under two treatments, routine and prompted. Take-offs have stereoscopic pairs of .pos files: 3D coordinates which track the pigeons heard through each frame its position was recorded. Matlab code for managing and generating the flight paths is included. R code for analysing and plotting the data is included.