cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.159272
title: Snp And Indel Discovery And Genotyping In Next-Generation Sequencing Data

description: Code, logs and data for discovery and genotyping of SNPs and indels, in the the D.melanogaster genome, using GATK HaplotypeCaller. Code is in the zipped folder named code.zip. Run logs for this code as in the zipped folder named logs.zip. The unfiltered vcf genotypes file is named lhm_rg_HC_2015-09-15.vcf.gz. The filtered vcf genotypes file is named f1.lhm_rg_HC_raw.vcf.gz. The vcf submitted to NCBI dbSNP (filtered, and with indels &gt;50bp and variants with null alternate alleles both removed) is named dbSNP.lhm_rg_HC_raw.vcf.gz. The folder local_reference.zip contains the reference assembly files against which genotypes were called against, and includes the code used to format the data prior to use. Also included is genotypes data from the two in-house reference line samples sequenced (BDGP6+ISO1 mito/dm6, Bloomington <em>Drosophila</em> Stock Center no. 2057)

Samples are 220 Sussex-LH<sub>M</sub> hemiclones, and 2 RG. The first run did not include chromosome 4 and the mitochondrial genome, so these were genotyped separately, and then added to the rest of the results.

The link for the NCBI dbSNP record is currently https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461and the submitter handle is MORROW_EBE_SUSSEX.

At the time of writting, the NCBI D.melanogaster build is still being updated, and therefore ss identifiers, but not rs identifers are available.

The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
DOI: 10.5281/zenodo.159282
title: Graphing And Tabulating Next-Generation Sequencing And Genotyping Data

description: Making figures and tables for publication. Each zip archive contains input data, shell script to initiate and log R script, one R script for generating several graphs and tables, and the output graphs and tables themselves.

Data was generated by whole-genome resequencing of 22 individual D.melanogaster from Sussex-LHM population and 2 from the Sussex RG line, followed by read-mapping, then genotyping with Haplotype Caller and Genomestrip.

Locations for raw data, code, logs, extended QC data:

Sequence reads NCBI SRA268956

NCBI dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewBatch.cgi?sbid=1062461

NCBI dbVar accession number pre-release nstd134

 

The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
description: The principle researcher for this project was additionally funded by a Royal Society University Research Fellowship (UK).
DOI: 10.5281/zenodo.159472
title: Structural Variant Discovery And Genotyping In Next-Generation Sequencing Data

description: Code, logs, data, and summaries for detection and genotyping of genomic structural variants in the D.melanogaster Sussex LHM hemiclones (and one in-house reference line individual), using Genomestrip/2.0

The unfiltered CNV pipleline results are lhm_gs.cnvs.raw.vcf.gz

Filtered CNV results (including removal of bad samples) are filtered.goodS.lhm_gs.cnvs.raw.vcf.gz

The file uploaded to NCBI dbVAR (which comprises of the filtered CNVs and indels &gt;50bp from the HaplotypeCaller method) is lhm_sx16.dbVAR.vcf.gz

The NCBI dbVAR accession number is nstd134. Code, logs and summary data are in the zipped archives, named accordingly. The archive reference_data.zip contains additional input files required for Genomestrip, including a shell script for making some of them. The file gstrip_lhm_RG_bams.list is also an input for Genomestrip, indicating bam file names and paths.

The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
DOI: 10.5281/zenodo.159930
title: Set Of Basic Stimuli Used For Our Experiments

description: Set of basic stimuli used for our experiments. Including a short description
DOI: 10.17632/ggyzww74b2.2
title: Functions and optimization of portfolio of Green companies

description: Functions and optimization of portfolio of Green companies. Optimization using desirability function. Function developed using several different types of analysis. Crossed mixture design of experiment, PCA, clusters and traditional methods considered. Comparison between each method and optimization done as well.
DOI: 10.17632/9kvzx7k5yh.2
title: Design of experiment sheets of Green Companies

description: Design of experiment sheets of Green Companies using crossed mixture design, clusters and PCA method. Results about returns and risk of several types of designs. The optimization can be done using methods like Desirability function, interior point method.
DOI: 10.17632/s2kny3549v.2
title: PCA applied on calculated financial indicators and quotations analysis

description: PCA applied on calculated financial indicators and quotations analysis, Returns and risk calculated. Original quotations and logarithmic returns calculated. Portfolios analysis using PCA and clusters. Listed companies: APPLE INC. ADOBE SYSTEMS INCORPORATED Analog Devices, Inc. Baker Hughes Incorporated BIOGEN IDEC INC. Ball Corporation Coca-Cola Enterprises, Inc. THE CLOROX COMPANY COMERICA INCORPORATED EMC CORPORATION IHS INC. MASCO CORPORATION MetLife, Inc. The Mosaic Company NIKE, INC. QUALCOMM Incorporated SIGMA-ALDRICH CORPORATION SPRINT CORPORATION Molson Coors Brewing Company WYNDHAM WORLDWIDE CORPORATION
DOI: 10.17632/w273xgdtyy.1
title: Shock-Induced Mix Across an Ideal Interface - Supplemental Material

description: This Mendeley Data repository contains: 1. Supplemental material for Fig 1. of the paper "Shock-Induced Mix Across an Ideal Interface" by C. Bellei and P. A. Amendt. The movies were obtained from a particle-in-cell simulation using the code Lsp. The simulation models a shock wave transiting an interface that separates a high-density deuterium-tritium (DT) plasma from a low density 3He plasma. It shows the formation of a DT ion bunch ahead of the 3He transmitted shock. For more details, please refer to the above paper. 2. Movie of a Noh test, used to benchmark the multi-ion plasma fluid code described in the paper (this is a test in spherical geometry).
DOI: 10.18462/iir.icr.2015.0640
title: Analysis of the effect on the system performance by the reflux ratio of regeneration solution in liquid desiccant system.

description: In conventional liquid desiccant system, the diluted solution after dehumidification is usually completely sent to the regenerator, which leads to the poor system performance. This paper tries to study on the effect of the solution regeneration reflux ratio on the overall system. Firstly, the novel configuration of liquid desiccant system that can adjust the reflux ratio of regeneration was put forward. Then, the major components of the system were modelled mathematically. Lastly, energy consumption and the system coefficient of performance (COP) under different conditions, including different moisture-removing load and varied solution regeneration reflux ratio, were simulated. The results show that, the overall performance of the liquid desiccant system can be improved by reducing the solution regeneration reflux ratio, moreover, the improving effect are stronger under lower solution regeneration temperature and lower moisture-removing load. However, the reflux ratio cannot be reduced unlimited since the regeneration temperature will be higher, thus there is a rational optimal solution regeneration reflux ratio.
DOI: 10.3334/cdiac/spruce.026
title: SPRUCE Stability of Peatland Carbon to Rising Temperatures: Supporting Data

description: This data set reports the results of extensive field measurements and laboratory analyses of samples from the SPRUCE experiment. Results indicate that ecosystem-scale warming of over 2 m of peat exponentially increased CH4 emissions —but not ecosystem respiration of CO2.  Multiple lines of evidence, including incubations and in situ analyses of 14C, dissolved gases, and microbial community metabolic potential, indicate that CH4 emissions increased due to surface processes and not degradation of deeper buried carbon.  The supporting data provided include the summarized and aggregated data used to generate the six figures in the main text of the paper and the 12 supplementary figures.
DOI: 10.5258/soton/401246
title: Modelling the effect of hydration on skin conductivity

description: A model representing the skin was subjected to a variety of electrical signals. The parts of the model representing the Stratum Corneum were given different conductivities to represent different levels of hydration.
DOI: 10.5281/zenodo.159613
title: Mitochondrial Dna Tree For Coi Sequences (Dna Barcode) Of The Goby Genus Trimma.

description: Mitochondrial DNA tree for COI sequences (DNA barcode) of the goby genus Trimma
DOI: 10.6073/pasta/75ac46d5374c289f826ed99dd65ffdc4
title: Vegetation surveys at CAP LTER ripirain-area bird-monitoring locations in the greater Phoenix metropolitan area (2013)
DOI: 10.14457/tu.the.2008.597
title: พัฒนาการการบริหารงานตามหลักความโปร่งใสและการมีส่วนร่วมของประชาชน :
DOI: 10.14457/tu.the.2008.598
title: ดัชนีชี้วัดความเป็นวิชาชีพของผู้สื่อข่าวการเมืองไทย
DOI: 10.14457/tu.the.2008.599
title: การสื่อสารทางการเมืองของพระสงฆ์ไทย :
DOI: 10.17632/ccpzrpz4xk.2
title: Monthly quotation of twenty green companies

description: Daily quotation of twenty green companies choose by PCA applied on Newsweek Green Companies Ranking of 2014 compiled into a Monthly quotation
DOI: 10.17632/cpvr7gdy9r.2
title: The PCA applied into the Newsweek Green Companies Ranking of 2014

description: The sheets contains the original ranking of fifty companies and its indicators. The PCA applied into the Newsweek Green Companies Ranking of 2014. One new ranking based on the PCA method and the NASDAQ codes.
DOI: 10.17632/vjsmh4b7zt.2
title: Replication of the monthly quotation

description: This file contains the data of the replication of twenty green companies. The replication method was the ARMA-GARCH lag equal one.
DOI: 10.18462/iir.icr.2015.0642
title: Design of phase change thermal energy stores (PCM-TES) for residential heat pump applications.

description: This paper will present experimental research on the performance of a novel residential heat pump coupled to a phase change material (RT21 paraffin) and water in an adjacent thermal energy store. The storage element is associated with low-grade waste heat recovered from domestic sources through a mechanical ventilation system for example in order to minimise energy losses. This heat is then used at some later time as either the evaporator heat source or it augments the performance of an air-source evaporator. The work presented here focuses upon the performance of the heat pump using the water and PCM store as a heat source. The configuration of the heat exchanger is a multi-tube system with small fins to enhance heat transfer but not inhibit convection. Fundamental heat exchanger design was underpinned by an extensive experimental programme which included 40 tests with different tube dimensions, spacing and temperature differences for both the charging and discharging process. The volume of the PCM TES was 60 litres and it is coupled on low pressure side of the heat pump. A Copeland scroll compressor ZH15K4E-PFJ was employed with refrigerant R-134a in the system. The results are presented along with suggestions for further improvements.
DOI: 10.14457/tu.the.2008.600
title: ความคาดหวัง การใช้ประโยชน์ และความพึงพอใจจากการใช้อินเทอร์เน็ตความเร็วสูง (ADSL) ของนักเรียนชั้นประถมศึกษาปีที่ 5 สังกัดกรุงเทพมหานคร
DOI: 10.14457/tu.the.2008.601
title: การเปิดรับและผลกระทบของรายการด้านโภชนาการทางโทรทัศน์ที่มีต่อความรู้ ทัศนคติและพฤติกรรมของประชาชนในเขตกรุงเทพมหานคร
DOI: 10.14457/tu.the.2008.602
title: ทัศนะของทหารสังกัดกองทัพบกซึ่งปฏิบัติงานอยู่ในหน่วยงานที่มีที่ตั้งอยู่ในเขตกรุงเทพมหานครต่อปัจจัยการกระทำผิดวินัยของทหาร
DOI: 10.14457/tu.the.2008.603
title: ทัศนะของผู้บริหารในกระบวนการยุติธรรมต่อการนำมาตรการลงโทษระดับกลางมาใช้ควบคุมผู้กระทำผิดในสังคมไทย
DOI: 10.14457/tu.the.2009.689
title: The effect of exchange rates on firm's investment :
DOI: 10.14457/tu.the.2009.690
title: Monetary policy transmission mechanisms and asset prices bubbles in Thailand
DOI: 10.14457/tu.the.2009.691
title: The economic impacts of FDI productivity spillover :
DOI: 10.18462/iir.icr.2015.0646
title: Thermal regulating system in temperature-controlled containers.

description: Temperature-controlled containers are used for the transport of temperature-sensitive health products. The dynamic container (active system) equipped with a refrigerating unit, regulates the temperature, but requires an electrical energy source or large batteries during transport. The static (passive) system, in the form of an insulated container refrigerated by a phase change material, is an energy independent solution but it does not control the temperature. The thermal regulating system combines the advantages of static and dynamic systems. It is an energy independent solution that detects the temperature of the payload and adjusts the absorption of heat accordingly, by opening or closing a thermal conduit. The container is made of vacuum insulation panels combined with polyurethane and a rigid outer wall. The cold source (eutectic gel) and the thermal regulating device are integrated into the lid. This study is a thermal qualification of this solution.
DOI: 10.18462/iir.icr.2015.0647
title: Thermally driven hybrid ejector heating and cooling technologies: an innovative solution beyond comparison.

description: The remarkable trend of the modern technologies is reduction of the energy intensity of production processes and energy flows recuperation that is determined by resources conservation, limiting of greenhouse gas emissions related to fossil fuels combustion, which remain the leading source of energy in the world. Many industries consume a lot of process steam and, in most of cases, require significant cooling capacities. Simultaneous heating and cooling generation in the dual-purpose highly efficient thermally driven system became a key point of the studies performed by the consortium of the V.S. Martynovsky Institute of Refrigeration, Cryogenic Technologies and Eco Energetics and WILSON/SRTC. In this paper authors suggested an innovative solution based on a hybrid of the Ejector Heat Pump (EHP) and the Ejector Refrigeration System (ERS), connected functionally by the generator-condenser in the cascade cycle. In this case, the driving force can be any secondary or waste heat of technological processes, solar, geothermal or any other middle/low-grade heat sources. The advantage of this system is its higher performance in heating and cooling modes that is 1.5 - 3.5 times higher than each operating individually.
DOI: 10.18462/iir.icr.2015.0648
title: Effect of absorption conditions on enhancement of ammonia/water bubble absorption in a binary nanofluid.

description: The main objective of the paper is to investigate the enhancement for ammonia/water bubble absorption process using the carbon nanotubes(CNTs) - ammonia binary nanofluid as the working medium. The effect of absorption conditions on the enhancement of the binary nanofluid is studied experimentally. The absorption conditions include the nozzle’s diameter, refrigeration temperature, initial ammonia concentration of the aqueous ammonia, and temperature of the aqueous ammonia. The results show that the strengthening effect of the binary nanofluid is hardly influenced by the nozzle’s diameter, but increases with decreasing the refrigeration temperature. And it increases with increasing the initial ammonia concentration and temperature of the aqueous ammonia. The effects of the refrigeration temperature, the initial ammonia concentration and temperature of the aqueous ammonia all proved that the enhancement of the binary nanofluid is more significant in the case of the lower absorption potential. This paper presents a better understanding of the mechanism of the binary nanofluid enhancing bubble absorption in thermally-driven absorption refrigeration systems.
DOI: 10.14457/tu.the.2007.409
title: Pairs trading :
DOI: 10.14457/tu.the.2008.604
title: An analysis of global food supply chains 1999-2008
DOI: 10.14457/tu.the.2008.605
title: Human trafficking :
DOI: 10.14457/tu.the.2008.606
title: Thai-Japanese economic relations after the economic crisis 1997 :
DOI: 10.14457/tu.the.2008.607
title: The role of Japan toward the nuclear crises on the Korean Peninsula since 1990s
DOI: 10.14457/tu.the.2008.608
title: The role of Japan towards environmental issues :
DOI: 10.18462/iir.icr.2015.0615
title: Modeling and RSM optimization of standing-wave thermoacoustic refrigerator.

description: Thermoacoustic refrigerators make generally use of acoustic waves to produce the work required to transfer heat from a cold heat exchanger to a hot one. As the crucial part of thermoacoustic refrigerators, the stack geometry and parameters interaction play an important role in determining the cooling performance. In this study, the dynamic mesh model was proposed in the light of the actual working condition of an acoustic driver, and its validity was also verified. Moreover, the structural optimization of the stack to improve the performance of thermoacoustic refrigerator was carried out using response surface methodology (RSM). Based on the consideration of parameters interaction, the optimized values of stack parameters suggested by RSM have been predicted successfully. Results showed that optimal stack parameters group could realize the best cooling performance. The optimal ratios of stack spacing to stack thickness and stack length to stack position were 3-4 and 0.85-1.05, respectively. Our study provides a new method for modeling and optimizing the thermoacoustic refrigerator, which helps to popularize its application.
DOI: 10.18462/iir.icr.2015.0651
title: Study on generator for ice slurry using the pressure shift feezing method.

description: Owing to its good flowability and large latent heat of fusion, ice slurry, which is a mixture of fine ice particles and liquid water, is utilized in ice storage systems. Ice slurry has attracted much attention in recent times for use as a direct-contact coolant, including as a cold source for air-conditioning. There is the particular expectation of the development of biocompatible ice slurry for use in the medical field. However, the generation of biocompatible ice slurry by the conventional method using low-concentration sodium chloride solution is difficult. In the present study, we generated ice slurry by the method of pressure shift freezing, which is based on the freezing-point depression of an aqueous solution under high-pressure conditions. To determine the basic characteristics of the sequential ice slurry generator, experimental investigations were conducted in which different aqueous solutions were used as the test fluid. We successfully established the basic characteristic of the ice slurry generator. Moreover, the physical properties of the ice slurry indicated that the shape of the ice particles in the ice slurry was significantly determined by both the degree of supercooling and the salinity. The relationship between the ice packing factor and the degree of supercooling is discussed in detail.
DOI: 10.5281/zenodo.159934
title: Music Workflow Used In The Evaluation Of The Vframework

description: Music Workflow used in the evaluation of the VFramework

Original execution Windows, re-execution Linux.
DOI: 10.14457/tu.the.2008.609
title: Changes in Japan's security policy after the Cold War :
DOI: 10.18462/iir.icr.2015.0620
title: Numerical study of the dynamic pressurization in a cryogenic storage tank.

description: In this paper, the dynamic pressure-rise characteristics of space cryogenic tanks under microgravity have been studied. The systematic thermodynamic model for solving the problem of evaporation phase transition has been built. The effects of various factors such as the tank size and vapor location are discussed in details. Results show that the tank size determines the intensity of natural-convective heat transfer and then affects the heat distribution inside the tank. For small-size tanks, pressure-rise rate is larger when the vapor region is located in the center of the tank, while for large-size tanks, when the vapor region is located in the top area, pressure inside the tank rises faster. Achievements of this research can provide the theoretical basis for future space storage technologies of cryogenic fluid management.
DOI: 10.5281/zenodo.159620
title: Sfsheath/Roman-Amphitheaters: First Released Draft.

description: This is a draft of roman-amphitheaters compiled as an early release. Only the source geojson and derived text formats are currently included.
DOI: 10.14457/tu.the.2008.610
title: The traffic in methamphetamine in Myanmar and the impacts on Thailand's national security
DOI: 10.18462/iir.icr.2015.0622
title: Thermodynamic optimization of a helically coiled heat exchanger for Joule-Thomson refrigerators using response surface methodology.

description: In this study, an attempt is made to evaluate the effect of certain geometrical parameters on thermodynamic performance of the recuperator in the miniature Joule-Thomson cryocooler. Tube length “L”, tube diameter “Dt”, rib effect coefficient “S” and shell diameter “Ds” are selected as influencing parameters. A novel optimization model is developed using Response Surface Methodology (RSM) based on the available work loss minimization for the recuperator. The adequacy of the model is examined using the Analysis of Variance (ANOVA). The final optimization results show that an optimum combination of the geometrical parameters of the recuperator exists that leads to a minimum available work loss at certain conditions. It has been proven that the relative error of the optimum results is less than 1.4%. The model and results presented here for the optimization of the recuperator may provide a helpful guidance and a new way for the optimization of J-T cryocooler.
DOI: 10.14457/kmitl.res.2014.112
title: ผลของรูปทรงห้องผสมที่มีต่อการไหลสองเฟสในท่อขนาดไมโครที่วางตัวในแนวดิ่ง
DOI: 10.14457/kmitl.res.2014.113
title: การศึกษาการใช้ประโยชน์แบคทีเรีย endophytes ที่สร้างฮอร์โมน indole-3-acetic acid (IAA) ในการส่งเสริมเจริญเติบโตของพืช
DOI: 10.18462/iir.icr.2015.0627
title: Speed of sound measurements of HFO-1234ze(E) in the liquid phase.

description: The present study deals with an experiment to investigate speeds of sound of refrigerant HFO-1234ze(E) at near saturated and compressed liquid conditions. The measurement system is mainly composed of an ultrasonic sensor and a standard resistance temperature detector and two pressure transducers. The measurements were conducted in the temperatures range from 0 to 70°C and the pressures range up to 2.45 MPa with an uncertainty of ±0.82 m/s. The measurement results of speed of sound of HFO-1234ze(E) in the liquid phase indicated that the effect of temperature on the speed of sound is greater than that of pressure, and were compared to those calculated from REFPROP. The measurement results are slightly lower than those calculated from REFPROP with a maximum deviation of 1.2%. REFPROP states that speed of sound in HFO-1234ze(E) liquid phase has an uncertainty of 0.2%, so our measurement results are not consistent with those of REFPROP.