cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10899405
title: Data from Automatic Lidar and Ceilometer (ALC) measurements at Berlin – Wedding (BEWEDD) from 2021-08-26 to 2022-10-12 [RAW]

description: Original data files from ALC measurements. Part 2 of 3.
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the site and deployment can be found in the urbisphere-Berlin campaign technical documentation.

Files are organised in sub-directories per year and day of year (DOY).

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.5281/zenodo.10899406
title: Data from Automatic Lidar and Ceilometer (ALC) measurements at Berlin – Wedding (BEWEDD) from 2021-08-26 to 2022-10-12 [RAW]

description: Original data files from ALC measurements. Part 2 of 3.
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the site and deployment can be found in the urbisphere-Berlin campaign technical documentation.

Files are organised in sub-directories per year and day of year (DOY).

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.3535/4gr-f49-fcg
title: Limnodrilus hoffmeisteri Claparède, 1862

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hww-ycm-lyb
title: Ficopomatus enigmaticus (Fauvel, 1923)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d8.v1
title: Additional file 4: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: One-to-one orthologous relationships between pineapple and Arabidopsis as well as that between pineapple and rice. (XLSX 16Â kb)
DOI: 10.3535/hn1-5ff-clh
title: Tubifex tubifex (Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d7
title: Additional file 3: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: Ka/Ks calculation of the duplicated pineapple R2R3-MYB gene pairs. (XLSX 11Â kb)
DOI: 10.3535/kpv-j4q-dhn
title: Diclidophora Krøyer, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rms-8fz-q5q
title: Cerebratulus gardineri Punnett, 1903

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d10.v1
title: Additional file 6: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: Consensus sequences of the group specific motifs. (XLSX 11Â kb)
DOI: 10.3535/7ne-qgv-h2a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b0f-yvs-b2j
title: Nereis pelagica Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d8
title: Additional file 4: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: One-to-one orthologous relationships between pineapple and Arabidopsis as well as that between pineapple and rice. (XLSX 16Â kb)
DOI: 10.3535/b3a-ffp-z8x
title: Lumbricillus Ørsted, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nqm-rhl-81w
title: Oncholaimellus calvadosicus de Man, 1890

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hv4-zh5-y37
title: Lumbricillus Ørsted, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmq-625-3pn
title: Lumbricillus Ørsted, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d10
title: Additional file 6: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: Consensus sequences of the group specific motifs. (XLSX 11Â kb)
DOI: 10.3535/k5d-510-35g
title: Palola siciliensis (Grube, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wlr-779-1gm
title: Phagocata kawakatsui Okugawa, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mvl-e3q-x85
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d13.v1
title: Additional file 9: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: The RNA-seq data of AcMYB genes in different tissues and developmental stages. (XLSX 89Â kb)
DOI: 10.3535/95y-18s-r5w
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/np7-z2g-ekp
title: Branchiomma bombyx (Dalyell, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816481_d2.v1
title: Additional file 2: Table S2. of Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

description: A table to assess whether the various demographic and neuro-pathological variables may be confounding the relationship between miRNA expression and pathological AD. A linear model is used to model miRNA expression by Study, Age at death, Sex, neuronal proportion (NNLS), post-mortem interval (PMI), RNA Integrity number (RIN) and pathological AD. The effect of pathological AD on the miRNA is reported (coef.AD) as well as the probability of observing this effect or something more extreme assuming that it should be zero (pval.AD). Then for each of the covariates a model is fit without including this covariate in the model and the effect of AD on miRNA expression is calculated again; e.g. pval.AD (−Age) is from the model not including Age at death. (CSV 28 kb)
DOI: 10.3535/57a-sj5-shd
title: Coelogynopora Steinböck, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxh-v9a-64h
title: Paranais litoralis (Müller, 1784)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816451_d13
title: Additional file 9: of Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

description: The RNA-seq data of AcMYB genes in different tissues and developmental stages. (XLSX 89Â kb)
DOI: 10.3535/ek2-2s4-9dz
title: Bathyvermilia langerhansi (Fauvel, 1909)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kv5-gjk-m3h
title: Alitta succinea (Leuckart, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8mn-f24-vvq
title: Apomatus Philippi, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816481_d3.v1
title: Additional file 3: Table S4. of Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimerâ  s disease

description: Reported are the p-value and beta coefficient for the association of each lincRNA with AD, NP and NFT from a series of linear models which include Study, Age at death, Sex, neuronal proportion (NNLS), post-mortem interval (PMI) and RNA Integrity number (RIN) as covariates. (CSV 69 kb)
DOI: 10.3535/wkb-4ma-jl8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x72-d42-s4p
title: Serpulidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816481_d2
title: Additional file 2: Table S2. of Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

description: A table to assess whether the various demographic and neuro-pathological variables may be confounding the relationship between miRNA expression and pathological AD. A linear model is used to model miRNA expression by Study, Age at death, Sex, neuronal proportion (NNLS), post-mortem interval (PMI), RNA Integrity number (RIN) and pathological AD. The effect of pathological AD on the miRNA is reported (coef.AD) as well as the probability of observing this effect or something more extreme assuming that it should be zero (pval.AD). Then for each of the covariates a model is fit without including this covariate in the model and the effect of AD on miRNA expression is calculated again; e.g. pval.AD (−Age) is from the model not including Age at death. (CSV 28 kb)
DOI: 10.6084/m9.figshare.c.3816481_d3
title: Additional file 3: Table S4. of Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimerâ  s disease

description: Reported are the p-value and beta coefficient for the association of each lincRNA with AD, NP and NFT from a series of linear models which include Study, Age at death, Sex, neuronal proportion (NNLS), post-mortem interval (PMI) and RNA Integrity number (RIN) as covariates. (CSV 69 kb)
DOI: 10.3535/15b-fvw-fhj
title: Serpulidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7hz-csr-gyl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.11149401
title: Dataset and code used for Quantum SWAP gate realized with CZ and iSWAP gates in a superconducting architecture

description: The following dataset contains the experimental data taken in conjunction with the work "Quantum SWAP gate realized with CZ and iSWAP gates in a superconducting architecture". The set also includes code used for post-processing and analysis of the data, as well.

The core format is .hdf5, formatted in a proprietary structure used by the lab instrument framework Labber. However, there is no license required for downloading and using the Log Browser feature of Labber, meaning that all of the data in the set is fully readable without purchasing any software to do so. And, the data files are fully readable using easily accessible .hdf5 tools such as h5py, although some structure formatting will be needed in this case.

Various subsections of the data contain numerous readme-files explaining further details.

The .zip files were archived using 7-Zip. In case you receive an error akin to "Cannot open folder, the compressed folder is invalid." - then you should use 7-Zip to open said .zip file.

Plugin code written for Labber is typically MIT licensed by default. See the LICENSE file of the particular subfolder that contains such code.

The upload includes a clone copy of Christian Križan's online repository "Quantum-computing-using-IMP-Presto". The clone copy contains license information for this code.
DOI: 10.5281/zenodo.11149402
title: Dataset and code used for Quantum SWAP gate realized with CZ and iSWAP gates in a superconducting architecture

description: The following dataset contains the experimental data taken in conjunction with the work "Quantum SWAP gate realized with CZ and iSWAP gates in a superconducting architecture". The set also includes code used for post-processing and analysis of the data, as well.

The core format is .hdf5, formatted in a proprietary structure used by the lab instrument framework Labber. However, there is no license required for downloading and using the Log Browser feature of Labber, meaning that all of the data in the set is fully readable without purchasing any software to do so. And, the data files are fully readable using easily accessible .hdf5 tools such as h5py, although some structure formatting will be needed in this case.

Various subsections of the data contain numerous readme-files explaining further details.

The .zip files were archived using 7-Zip. In case you receive an error akin to "Cannot open folder, the compressed folder is invalid." - then you should use 7-Zip to open said .zip file.

Plugin code written for Labber is typically MIT licensed by default. See the LICENSE file of the particular subfolder that contains such code.

The upload includes a clone copy of Christian Križan's online repository "Quantum-computing-using-IMP-Presto". The clone copy contains license information for this code.
DOI: 10.3535/rr6-gyh-xf4
title: Dugesia Girard, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vv4-gtw-h24
title: Pristina longiseta bidentata Černosvitov, 1942

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y7y-42c-jv0
title: Eupolymnia Verrill, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/knt-apd-he7
title: Glycera cinnamomea Grube, 1874

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3dc-jlp-6e5
title: Pheretima beaufortii Cognetti de Martiis, 1911

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lrf-0t7-y6b
title: Streblosoma quadridentatum Caullery, 1944

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b88-4re-912
title: Allonais paraguayensis (Michaelsen, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zng-x53-cpc
title: Dugesia Girard, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ge-v4c-ceb
title: Ochetostoma baronii (Greeff, 1872)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rhd-ryc-nvh
title: Pontoscolex corethrurus (Muller, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dky-90l-ywg
title: Rhodopsis pusilla Bush, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wzt-l3x-k2e
title: Rhodopsis pusilla Bush, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2b8-ep8-jp6
title: Nais elinguis Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w87-kjx-ved
title: Hydroides norvegica Gunnerus, 1768

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ad-q1r-pvj
title: Chaetogaster diaphanus (Gruithuisen, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l7p-6n7-gh2
title: Eteone longa (Fabricius, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d3
title: Additional file 3 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: Model. N. salina iNS934 model. SBML representation of the reconstructed model of N. salina. This file is compatible with SBML Level 3, Version 1, fbc ver. 2. It has been tested with COBRA Toolbox (2.0). (XML 4137 kb)
DOI: 10.3535/rse-6lq-19f
title: Tylenchus davainei Bastian, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d4.v1
title: Additional file 4 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: Extra tables and figures. Tables and figures with details on model reconstruction and analysis. (XLSX 484 kb)
DOI: 10.3535/gwl-kv4-13z
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xs3-n4h-43c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6e0-myf-9ap
title: Nephtys longosetosa Örsted, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lre-fmv-2s6
title: Spirobranchus corniculatus (Grube, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9pf-4aq-zdk
title: Hydroides sanctaecrucis Krøyer in Mörch, 1863

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kng-2s0-4wk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d4
title: Additional file 4 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: Extra tables and figures. Tables and figures with details on model reconstruction and analysis. (XLSX 484 kb)
DOI: 10.3535/8kp-g6q-scp
title: Spionidae Grube, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c5y-30t-9nv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d5.v1
title: Additional file 5 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: ID mapping. Mapping of transcriptome of N. salina to CCMP537 genome assembly [58]. (CSV 1792 kb)
DOI: 10.3535/5kj-qye-56a
title: Eulalia viridis (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgg-c4z-c8n
title: Scoloplos armiger (Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88n-eg1-mvp
title: Scoloplos armiger (Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r4l-6rw-el4
title: Plectus palustris de Man, 1880

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d5
title: Additional file 5 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: ID mapping. Mapping of transcriptome of N. salina to CCMP537 genome assembly [58]. (CSV 1792 kb)
DOI: 10.3535/1zd-vrg-05d
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6x1-v24-r0s
title: Polydora ciliata (Johnston, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x1r-e5e-wa1
title: Chaetogaster diaphanus (Gruithuisen, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/09w-ekc-8bl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0t5-x1t-rts
title: Chaetogaster diaphanus (Gruithuisen, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9la-xpl-krk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p96-j1t-9ax
title: Ascocotyle septentrionalis (Van den Broek, 1967) Gustinelli, Caffara, Scaravelli, Fioravanti & Scholz, 2021

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818068_d6.v1
title: Additional file 6 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: Constraints used to predict growth rates. Measured uptake rates of nitrogen sources (Nitrate/ammonium/urea) and estimated CO 2 uptake rates for batch cultures of N. salina. (XLSX 38 kb)
DOI: 10.3535/3qz-5tv-v8g
title: Lamellibrachia luymesi van der Land & Nørrevang, 1975

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5kj-x5c-s6v
title: Owenia fusiformis Delle Chiaje, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6gh-889-3hq
title: Cephalodiscus gracilis Harmer, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3818092_d2.v1
title: Additional file 2: Table S1. of Identification of long non-coding RNA in the horse transcriptome

description: The equine and corresponding human IDs of 50 lncRNA showing positional conservation to the same gene. (TXT 2Â kb)
DOI: 10.3535/2c4-0ks-dwm
title: Dendrocoelopsis ezensis Ichikawa & Okugawa, 1958

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/72l-nw5-x4b
title: Owenia fusiformis Delle Chiaje, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hc-1q0-zat
title: Nephtys cirrosa Ehlers, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.