cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1145641.10fu
title: SH1145641.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145644.10fu
title: SH1145644.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145646.10fu
title: SH1145646.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145649.10fu
title: SH1145649.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145650.10fu
title: SH1145650.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145653.10fu
title: SH1145653.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145656.10fu
title: SH1145656.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145662.10fu
title: SH1145662.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145671.10fu
title: SH1145671.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1145672.10fu
title: SH1145672.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18208803
title: München, Apotheke d. Krankenhauses links der Isar (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.sj37n2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lounsburyia trifasciata (Compere, 1925)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003710-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.4483936
title: Koranic Science, a Commentary [IO Bijapur 284]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 284 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 82 here with further notations and hyperlinks].


82.

B 284. Size 101/2 in. by 71/2 in.; foll. 633. Twenty or seventeen lines in a page.

Jalâl al-dîn SUYÛṬÎ’S (d. A. H. 911) Annotations on Baiḍâwî’s Commentary, entitled نواهد الابکار و شوارد1 الافکار. Cf. Ḥ. Kh. i. 474.

The author relates in his long and very polemical preface (fol. 2v.) that he compiled his work chiefly from the glosses on the Kashshâf, and from several grammatical works, viz. the two تذکرة, by Abu ‘Alî Fârisî and by Ibn Hishâm, some treatises of Ibn Jinnî, the امالی of Ibn Shajarî and of Ibn Ḥâjib, and others. He is very prolix in the beginning of his work. The annotations on Sûrahs 1-11, on which the author used to lecture during the years A.H. 880-890, occupy more than three quarters of the volume.

Plainly written in two different hands. The first leaf is wanting. Beginning: والعلامة شرف الدین. The final leaves are much injured.

Cat. p. 221, i. 6.

 

1 The MS. (fol. 2v.) has شواهد.
DOI: 10.5281/zenodo.4483937
title: Koranic Science, a Commentary [IO Bijapur 284]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 284 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 82 here with further notations and hyperlinks].


82.

B 284. Size 101/2 in. by 71/2 in.; foll. 633. Twenty or seventeen lines in a page.

Jalâl al-dîn SUYÛṬÎ’S (d. A. H. 911) Annotations on Baiḍâwî’s Commentary, entitled نواهد الابکار و شوارد1 الافکار. Cf. Ḥ. Kh. i. 474.

The author relates in his long and very polemical preface (fol. 2v.) that he compiled his work chiefly from the glosses on the Kashshâf, and from several grammatical works, viz. the two تذکرة, by Abu ‘Alî Fârisî and by Ibn Hishâm, some treatises of Ibn Jinnî, the امالی of Ibn Shajarî and of Ibn Ḥâjib, and others. He is very prolix in the beginning of his work. The annotations on Sûrahs 1-11, on which the author used to lecture during the years A.H. 880-890, occupy more than three quarters of the volume.

Plainly written in two different hands. The first leaf is wanting. Beginning: والعلامة شرف الدین. The final leaves are much injured.

Cat. p. 221, i. 6.

 

1 The MS. (fol. 2v.) has شواهد.
DOI: 10.6084/m9.figshare.c.3719611_d2
title: MOESM2 of Implications of evolutionary engineering for growth and recombinant protein production in methanol-based growth media in the yeast Pichia pastoris

description: Additional file 2. Table S4. Genome sequencing statistics
DOI: 10.57754/fdat.4s9zw-vea96
title: Gedichtkorpus Donne / Dickinson / Shakespeare

description: The corpus of poems by John Donne, Emily Dickinson and William Shakespeare consists of the poems "Batter my heart", `You said that I "was great"´, and "When in disgrace with fortune and men's eyes". It is the basis for an investigation of the interpretation of local composition and textual meaning.
description: Research carried out in work package A02 of the SFB 833.
DOI: 10.6084/m9.figshare.c.3719779_d1.v1
title: Additional file 1: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Read count tables for RNA-seq assay. File contains quantitative information from transcriptomic investigation of gene expression in the hippocampus in both raw (unnormalized) and normalized (FPKM) formats. (XLSX 15052 kb)
DOI: 10.15468/dl.gtbs7b
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "Locality is Mok-dong",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038855-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719779_d1
title: Additional file 1: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Read count tables for RNA-seq assay. File contains quantitative information from transcriptomic investigation of gene expression in the hippocampus in both raw (unnormalized) and normalized (FPKM) formats. (XLSX 15052 kb)
DOI: 10.6084/m9.figshare.c.3719779_d2.v1
title: Additional file 2: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Metadata table for RNA-seq assay. File contains information on RNA-seq samples such as sample ID, sex, timepoint, and estrous stage. (CSV 749 bytes)
DOI: 10.6084/m9.figshare.c.3719779_d2
title: Additional file 2: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Metadata table for RNA-seq assay. File contains information on RNA-seq samples such as sample ID, sex, timepoint, and estrous stage. (CSV 749 bytes)
DOI: 10.6084/m9.figshare.c.3719779_d3.v1
title: Additional file 3: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Spectral count tables for LC-MS/MS assay. File contains quantitative information from proteomic investigation of protein expression in the hippocampus in both raw (unnormalized) and normalized (NSAF) formats. (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3719779_d4.v1
title: Additional file 4: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Metadata table for LC-MS/MS assay. File contains information on LC-MS/MS samples such as sampleID, sex, timepoint, and estrous stage. (CSV 622 bytes)
DOI: 10.6084/m9.figshare.c.3719779_d3
title: Additional file 3: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Spectral count tables for LC-MS/MS assay. File contains quantitative information from proteomic investigation of protein expression in the hippocampus in both raw (unnormalized) and normalized (NSAF) formats. (XLSX 682 kb)
DOI: 10.17637/rh.22133483
title: Horse and Reindeer RECE data, figures, and maps

description: Horse and Reindeer datasets sourced from Sommer et al. (2013) and Vermeesch (2020). Data were reduced by querying all samples in both databases which used the terms Rangifer or Reindeer, and Equus or horse.
DOI: 10.6084/m9.figshare.c.3719779_d4
title: Additional file 4: of Sex differences in the molecular signature of the developing mouse hippocampus

description: Metadata table for LC-MS/MS assay. File contains information on LC-MS/MS samples such as sampleID, sex, timepoint, and estrous stage. (CSV 622 bytes)
DOI: 10.5281/zenodo.14513141
title: Grossen-Buseck Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.2edew3
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sialis Gilbert, 1890",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 91 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038856-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719785_d2.v1
title: MOESM2 of Persistent lymphopenia is a risk factor for ICU-acquired infections and for death in ICU patients with sustained hypotension at admission

description: Additional file 2. Details on the model fitting propensity score used.
DOI: 10.6084/m9.figshare.c.3721465_d13.v1
title: Additional file 21: Table S12. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Annotated proteins with sites under selection using PAML for M7 vs. M8 comparison. A. Achimenes cettoana. B. Achimenes erecta. C. Achimenes misera. D. Achimenes patens. E. Erythranthe lewisii. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3721465_d14
title: Additional file 2: Table S2. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3721465_d13
title: Additional file 21: Table S12. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Annotated proteins with sites under selection using PAML for M7 vs. M8 comparison. A. Achimenes cettoana. B. Achimenes erecta. C. Achimenes misera. D. Achimenes patens. E. Erythranthe lewisii. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3721465_d16.v1
title: Additional file 4: Table S3. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Protein homologs downloaded from GenBank used for HMM profile searches. A. ANS. B. DFR. C. F3′H and F3′5′H. D. R2R3-Mybs. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3721465_d16
title: Additional file 4: Table S3. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

description: Protein homologs downloaded from GenBank used for HMM profile searches. A. ANS. B. DFR. C. F3′H and F3′5′H. D. R2R3-Mybs. (XLSX 48 kb)
DOI: 10.5281/zenodo.4813081
title: In silico saturation mutagenesis of cancer genes

description: Source data and code needed to reproduce figures and pipeline associated to this study:

In silico saturation mutagenesis of cancer genesFerran Muiños, Francisco Martinez-Jimenez, Oriol Pich, Abel Gonzalez-Perez, Nuria Lopez-BigasDOI: 10.1038/s41586-021-03771-1URL: https://www.nature.com/articles/s41586-021-03771-1

Repo to reproduce all the figures of the paper: https://github.com/bbglab/boostdm-analyses

Repo to reproduce the training and prediction pipeline of the paper: https://github.com/bbglab/boostdm-pipeline