cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22548371
title: Indicator species and characterization of the woody and herbaceous layer in an Atlantic Forest ecotone area at the Paraná portion of Serra do Mar

description: Abstract The study aimed to evaluate the degree of conservation, analyse the structural and floristic similarity of the woody and herbaceous layers of two ecotone forest communities and evaluate the indicator species of a Mixed Ombrophilous Forest (MOF) and Dense Ombrophilous Forest (DOF). We outlined 30 sampling units of 100 m2 in each area (West and East), where we measured three woody and one herbaceous layers. Each species was classified into ecological groups, phytogeographic distribution and conservation status. We selected other 13 studies performed on similar ecosystems to carry out cluster and indicator species analyses. We registered 213 species, arranged into 63 families. The richest families were Myrtaceae, Lauraceae and Fabaceae. In the woody layers Araucaria angustifolia, Allophylus edulis and Cupania vernalis highlighted in West area, while Casearia sylvestris, Cyathea phalerata and Ilex paraguariensis highlighted in East area. Ctenitis paranaensis predominates in herbaceous layer of both areas. Our cluster analysis has formed two groups (MOF; DOF), including both study areas in MOF group. The study areas are in a maturation process. Serra da Baitaca State Park presents high conservationist importance. We list indicator species of montane MOF and DOF forests in the Paraná State, which can be used for monitoring alterations in vegetation caused by environmental changes.
DOI: 10.6084/m9.figshare.22548372.v1
title: Prevalence of Surgical Myocardial Revascularization in Diabetics and Non-diabetics After Acute Myocardial Infarction

description: Abstract Background Diabetes mellitus (DM) is a metabolic disorder characterized by persistent hyperglycemia. The main cause of death among diabetics is cardiovascular disease (CVD), which is a precursor to acute myocardial infarction (AMI). Approximately 30% of diabetic patients with AMI require myocardial revascularization surgery (MRS). Objective To evaluate the prevalence of MRS in diabetic and non-diabetic patients after AMI in a hospital in the city Criciúma, Brazil, during the period from 2016 to 2019. Methods A cross-sectional study was carried out with secondary data collection, with analysis of 215 medical records of diabetic and non-diabetic patients with AMI, submitted or not to MRS during the study period. For statistical analysis, the Shapiro-Wilk test, Pearson’s chi-square test and Fisher’s exact test were used, with a significance level of α = 0.05. Results The frequency of diabetic AMI patients with hypertension (88.1%) was significantly higher (p&lt;0.01) than of diabetic AMI patients without hypertension. Although no statistically significant differences were found in the other variables between the groups, smoking, hypertension and dyslipidemia were more prevalent in diabetic than in non-diabetic patients with AMI undergoing MRS. Conclusion The prevalence of MRS after AMI in diabetic patients was higher than in non-diabetic patients.
DOI: 10.6084/m9.figshare.22548374
title: Podcasts as an integral part of free open access medical education

description: Abstract: Introduction: Podcasts are audio broadcasts distributed over the internet that can be consumed through various platforms. From students to independent clinicians, the profile of medical podcast users is varied and a richer understanding of this user is essential for effective podcast development. Objective: To review the current literature on the use of podcasts as a health education tool and to understand the stages involved in preparing a medical podcast. Methods: The study is a narrative review developed through research in databases carried out at Unichristus University, in the city of Fortaleza-CE. An analysis of articles on podcasts or data on the prevalence of use, production or results of the use of podcasts for health education purposes was performed. A screening was performed by reading the abstracts and titles of 165 articles found in the Medline database, using the keywords ‘Podcasts’ and ‘medical education’, which resulted in 23 articles that met the inclusion criteria. Results: Based on the content found in the literature, the review was divided into seven categories: formats, episode duration, activities carried out while listening to a podcast, learning assessment, suggestions, developing a medical podcast and the podcast as a complementary teaching tool. Conclusion: the podcast is considered a promising medium of communication as a complementary tool to the traditional teaching methods, and educators should focus on developing evaluation processes for this technology, refining evidence-based guidelines for creating new podcasts.
DOI: 10.6084/m9.figshare.22548375
title: Chemical, physical, and biological properties of soil with pastures recovered by integration crop-livestock system in Eastern Amazon

description: ABSTRACT Soil quality can be understood as its capacity to provide several essential services within the ecosystem and has been used to understand the impact of different managements, providing information that proves the benefits and your maintenance of the agroecosystem. To understand the impact of different managements, this study aimed to compare the chemical, physical, and biological soil properties in pasture areas managed with different recovery times in an integrated crop-livestock system about perennial pastures and secondary forest. The following management systems were evaluated: Secondary Forest (SF), Perennial Pasture (PP), pasture recovered to five years through the intercropping corn + Brachiaria brizantha (Palisade grass) (ICL5), and pasture recovered to eight years through the intercropping corn + Brachiaria brizantha (Palisade grass) (ICL8). Different soil properties were evaluated, namely: Chemical: pH, H+Al, Al 3+ , P, K + , Ca 2+ , Mg 2+ , TOC, SB, CEC, V, and m; Physical: soil bulk density (Bd), total porosity (Tp), macroporosity (Ma), microporosity (Mi), soil resistance to penetration (Pr), and gravimetric soil water content (GWc); and biological: soil microbial biomass carbon (SMB-C), basal soil respiration (BSR), metabolic quotient (qCO 2 ), and microbial quotient (qMic). Perennial pasture and ICL8 areas were the ones that most contributed to the increase in nutrients (Ca 2+ , Mg 2+ , and K + ), TOC and sorption complex. The ICL8 area showed the best results in soil physical variables Ma, Tp, Pr, and GWc were the best results for the ICL8 area. Secondary forest and ICL8 areas presented the best results from SMB-C and qMic. Between periods of pasture recovery through the integration of crops and livestock, the longer the recovery time, the greater its beneficial effects on the different chemical, physical and biological soil properties, overcoming secondary forest and perennial pasture.
DOI: 10.6084/m9.figshare.22548375.v1
title: Chemical, physical, and biological properties of soil with pastures recovered by integration crop-livestock system in Eastern Amazon

description: ABSTRACT Soil quality can be understood as its capacity to provide several essential services within the ecosystem and has been used to understand the impact of different managements, providing information that proves the benefits and your maintenance of the agroecosystem. To understand the impact of different managements, this study aimed to compare the chemical, physical, and biological soil properties in pasture areas managed with different recovery times in an integrated crop-livestock system about perennial pastures and secondary forest. The following management systems were evaluated: Secondary Forest (SF), Perennial Pasture (PP), pasture recovered to five years through the intercropping corn + Brachiaria brizantha (Palisade grass) (ICL5), and pasture recovered to eight years through the intercropping corn + Brachiaria brizantha (Palisade grass) (ICL8). Different soil properties were evaluated, namely: Chemical: pH, H+Al, Al 3+ , P, K + , Ca 2+ , Mg 2+ , TOC, SB, CEC, V, and m; Physical: soil bulk density (Bd), total porosity (Tp), macroporosity (Ma), microporosity (Mi), soil resistance to penetration (Pr), and gravimetric soil water content (GWc); and biological: soil microbial biomass carbon (SMB-C), basal soil respiration (BSR), metabolic quotient (qCO 2 ), and microbial quotient (qMic). Perennial pasture and ICL8 areas were the ones that most contributed to the increase in nutrients (Ca 2+ , Mg 2+ , and K + ), TOC and sorption complex. The ICL8 area showed the best results in soil physical variables Ma, Tp, Pr, and GWc were the best results for the ICL8 area. Secondary forest and ICL8 areas presented the best results from SMB-C and qMic. Between periods of pasture recovery through the integration of crops and livestock, the longer the recovery time, the greater its beneficial effects on the different chemical, physical and biological soil properties, overcoming secondary forest and perennial pasture.
DOI: 10.6084/m9.figshare.22548377.v1
title: Lethal dose 50 of NaCl and ethyl methanesulfonate in jalapeño pepper (Capsicum annuum L.) seedlings and tolerance to salinity

description: ABSTRACT Soil salinity is a factor affecting crop production and yield. An estimated 74% of agricultural soils are saline, a problem that could be aggravated due to climate change. Our goal was to determine the lethal dose 50 (LD50) of NaCl and ethyl methanesulfonate (EMS) in jalapeño pepper (Capsicum annuum L. cv. Jalapeño M.) for selecting putative salt-tolerant mutants. Root length was used as an indicator of the LD50 of NaCl in seedlings cultured for 35 days in MS medium containing 0 (without NaCl), 50, 100, 150, 200, or 250 mM NaCl and germination rate as an indicator of the LD50 of EMS in seeds exposed to 0% (without EMS), 0.01%, 0.1%, 0.25%, or 0.5% EMS for 3 and 6 h. We selected salt-tolerant seedlings after 35 days in medium with the determined LD50 of NaCl. Canonical and probit analyses to the LD50 of NaCl and EMS results and multinomial linear regression for germination and survival were applied. LD50 of NaCl (150 mM) and EMS (0.3%) were determined. Seed exposure to 0.5% EMS for 6 h reduced germination (67%) and seedling survival (18%). We obtained four putative salt-tolerant mutants by culturing in medium containing the LD50 of NaCl, two from seeds exposed for 6 h to 0.01 EMS, and one each from of the seeds treated with 0.1% or 0.5% EMS. The results show that it is possible to select putative salt-tolerant mutants of jalapeño pepper through mutagenesis with EMS and in vitro culture in media containing the LD50 of NaCl.
DOI: 10.6084/m9.figshare.22548377
title: Lethal dose 50 of NaCl and ethyl methanesulfonate in jalapeño pepper (Capsicum annuum L.) seedlings and tolerance to salinity

description: ABSTRACT Soil salinity is a factor affecting crop production and yield. An estimated 74% of agricultural soils are saline, a problem that could be aggravated due to climate change. Our goal was to determine the lethal dose 50 (LD50) of NaCl and ethyl methanesulfonate (EMS) in jalapeño pepper (Capsicum annuum L. cv. Jalapeño M.) for selecting putative salt-tolerant mutants. Root length was used as an indicator of the LD50 of NaCl in seedlings cultured for 35 days in MS medium containing 0 (without NaCl), 50, 100, 150, 200, or 250 mM NaCl and germination rate as an indicator of the LD50 of EMS in seeds exposed to 0% (without EMS), 0.01%, 0.1%, 0.25%, or 0.5% EMS for 3 and 6 h. We selected salt-tolerant seedlings after 35 days in medium with the determined LD50 of NaCl. Canonical and probit analyses to the LD50 of NaCl and EMS results and multinomial linear regression for germination and survival were applied. LD50 of NaCl (150 mM) and EMS (0.3%) were determined. Seed exposure to 0.5% EMS for 6 h reduced germination (67%) and seedling survival (18%). We obtained four putative salt-tolerant mutants by culturing in medium containing the LD50 of NaCl, two from seeds exposed for 6 h to 0.01 EMS, and one each from of the seeds treated with 0.1% or 0.5% EMS. The results show that it is possible to select putative salt-tolerant mutants of jalapeño pepper through mutagenesis with EMS and in vitro culture in media containing the LD50 of NaCl.
DOI: 10.25403/upresearchdata.22110545
title: RESEARCH INSTRUMENTS

description: The survey questionnaire, PEI interview schedule, Key informants' interview guide.
DOI: 10.5519/qd.isz0hnha
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1375318 records)
DOI: 10.5519/qd.qzsevrqn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1375318 records)
DOI: 10.5281/zenodo.7794693
title: SEN12 Multi-Temporal Urban Mapping Dataset

description: Monthly mean Sentinel-1 SAR and cloud-free Sentinel-2 MSI images for the SpaceNet 7 training and test sites. Our dataset also includes monthly rasterized built-up area labels for the 60 training sites.
description: {"references": ["Van Etten, Adam, et al. \"The multi-temporal urban development spacenet dataset.\" Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition. 2021."]}
DOI: 10.15156/bio/sh0950692.09fu
title: SH0950692.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.7794692
title: SEN12 Multi-Temporal Urban Mapping Dataset

description: Monthly mean Sentinel-1 SAR and cloud-free Sentinel-2 MSI images for the SpaceNet 7 training and test sites. Our dataset also includes monthly rasterized built-up area labels for the 60 training sites.
description: {"references": ["Van Etten, Adam, et al. \"The multi-temporal urban development spacenet dataset.\" Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition. 2021."]}
DOI: 10.15156/bio/sh0950693.09fu
title: SH0950693.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.48758/ufz.12541
title: [German Drought Monitor] HESS publication deseasonalized soil moisture data

description: This archive contains deseasonalized soil moisture data at 40 locations from observations and hydrological simulations from mHM used in the publication https://hess.copernicus.org/preprints/hess-2021-402/

We acknowledge the TERENO community and FLUXNET community for providing soil moisture observational data. Special acknowledment goes to Hans-Jörg Vogel (UFZ), René Zahl (UFZ),  Christian Hohmann (GFZ), Ingo Heinrich (GFZ) and Falk Böttcher (DWD) for providing soil moisture observations. The TERENO and FLUXNET soil moisture data can be obtained at https://ddp.tereno.net/ddp/ and https://fluxnet.org/, respectively.
DOI: 10.6084/m9.figshare.22548433
title: Dataset RSP

description: Dataset
DOI: 10.6084/m9.figshare.22548433.v1
title: Dataset RSP

description: Dataset
DOI: 10.5281/zenodo.7780089
title: Phables v 0.2.0 benchmarking data and results

description: This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are, Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as <strong>Lake Water</strong> Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as <strong>Paddy Soil</strong> Wastewater virome (NCBI BioProject number PRJNA434744), referred to as <strong>Wastewater</strong> Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as <strong>IBD</strong> Each dataset was preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as <strong>Lake Water - MEGAHIT</strong>) and metaSPAdes (referred to as <strong>Lake Water - metaSPAdes</strong>). All the datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.
DOI: 10.15156/bio/sh0950694.09fu
title: SH0950694.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0950695.09fu
title: SH0950695.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.48758/ufz.12534
title: [German Drought Monitor] HESS publication SMI based drought characteristics, GDM-v1-2016 and GDM-v2-2021 setups

description: SMI based drought characteristics; drought intensity and avg. drought area 1952-2020 used in https://doi.org/10.5194/hess-2021-402, GDM-v1-2016 and GDM-v2-2021, SMI in depth 5-25cm and total soil (SM_Lall), Germany per gridcell and aggregated, SM cumulative density function based on 1951 -2015. Reference system and resolution GDM-v1-2016 (EPSG:31468, 4000m) GDM-v2-2021 (EPSG:4326, 0.015625 deg) 
  
  We kindly acknowledge the German Weather Service (DWD), the European Environmental Agency (EEA), the Federal Institute for Geosciences and Natural Resources (BGR), the Federal Agency for Cartography and Geodesy (BKG), the European Space Agency (ESA), the U.S. Geological Survey (USGS), the Global Runoff Data Centre (GRDC) as data providers. The scientific results have (in part) been computed at the High-Performance Computing (HPC) Cluster EVE, a joint effort of both the Helmholtz Centre for Environmental Research - UFZ (http://www.ufz.de) and the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig (http://www.idiv-biodiversity.de). We would like to thank the administration and support staff of EVE who keep the system running and support us with our scientific computing needs: Thomas Schnicke, Ben Langenberg, Guido Schramm, Toni Harzendorf, Tom Strempel and Lisa Schurack from the UFZ, and Christian Krause from iDiv.
DOI: 10.5281/zenodo.7780088
title: Phables v 0.2.0 benchmarking data and results

description: This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are, Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as <strong>Lake Water</strong> Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as <strong>Paddy Soil</strong> Wastewater virome (NCBI BioProject number PRJNA434744), referred to as <strong>Wastewater</strong> Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as <strong>IBD</strong> Each dataset was preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as <strong>Lake Water - MEGAHIT</strong>) and metaSPAdes (referred to as <strong>Lake Water - metaSPAdes</strong>). All the datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.
DOI: 10.15156/bio/sh0950696.09fu
title: SH0950696.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.