cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14489828.v1
title: Additional file 1 of Circadian rhythms in septic shock patients

description: Additional file 1: Table S1. Confidence intervals per clock gene and subject, representing the range of circadian amplitudes of gene expression that are consistent with the measurements at the 95% level (i.e., p
DOI: 10.6084/m9.figshare.14489851
title: Additional file 2 of Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response

description: Additional file 2 Table S1. List of differentially expressed genes identified using spline fitting and pairwise comparisons.
DOI: 10.6084/m9.figshare.14489851.v1
title: Additional file 2 of Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response

description: Additional file 2 Table S1. List of differentially expressed genes identified using spline fitting and pairwise comparisons.
DOI: 10.6084/m9.figshare.14489878
title: Additional file 2 of Inhibition of retinoic acid receptor α phosphorylation represses the progression of triple-negative breast cancer via transactivating miR-3074-5p to target DHRS3

description: Additional file 2. Differential miRNAs.
DOI: 10.6084/m9.figshare.14489873
title: Additional file 1 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 1: Supplementary Figure 1. Flowchart, six-years follow-up.
DOI: 10.6084/m9.figshare.14489873.v1
title: Additional file 1 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 1: Supplementary Figure 1. Flowchart, six-years follow-up.
DOI: 10.6084/m9.figshare.14489876
title: Additional file 2 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 2: Supplementary Table 1. Baseline characteristics of treatment groups prior to and post entropy balancing, six-years follow-up.
DOI: 10.6084/m9.figshare.14489878.v1
title: Additional file 2 of Inhibition of retinoic acid receptor α phosphorylation represses the progression of triple-negative breast cancer via transactivating miR-3074-5p to target DHRS3

description: Additional file 2. Differential miRNAs.
DOI: 10.6084/m9.figshare.14489876.v1
title: Additional file 2 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 2: Supplementary Table 1. Baseline characteristics of treatment groups prior to and post entropy balancing, six-years follow-up.
DOI: 10.6084/m9.figshare.14489879.v1
title: Additional file 3 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 3: Supplementary Table 2. Results from the unweighted DiD analyses
DOI: 10.6084/m9.figshare.14489882
title: Additional file 4 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 4: Supplementary Table 3. Results from the sensitivity analyses.
DOI: 10.6084/m9.figshare.14489882.v1
title: Additional file 4 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 4: Supplementary Table 3. Results from the sensitivity analyses.
DOI: 10.6084/m9.figshare.14489879
title: Additional file 3 of The effects of competition and bundled payment on patient reported outcome measures after hip replacement surgery

description: Additional file 3: Supplementary Table 2. Results from the unweighted DiD analyses
DOI: 10.6084/m9.figshare.14489891.v1
title: Additional file 3 of CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques

description: Additional file 3: SubTable 3. Web-Server Guide.
DOI: 10.6084/m9.figshare.14489891
title: Additional file 3 of CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques

description: Additional file 3: SubTable 3. Web-Server Guide.
DOI: 10.6084/m9.figshare.14489911
title: Additional file 1 of Human dental pulp stem cell responses to different dental pulp capping materials

description: Additional file 1: Raw data used in the article.
DOI: 10.6084/m9.figshare.14489911.v1
title: Additional file 1 of Human dental pulp stem cell responses to different dental pulp capping materials

description: Additional file 1: Raw data used in the article.
DOI: 10.21227/f94b-rn70
title: Piezoelectric Seismic Transducer Simulation Dataset

description: This dataset contains three simulation models: cantilever_transducer.mph, simply_supported_beam_transducer.mph and optimized_simply_supported_beam_transducer.mph.The cantilever_transducer.mph is a cantilever transducer model with a fixed center, which is used to compare its sensitivity-frequency response with that of the optimized simply supported beam transducer model.The simply_supported_beam_transducer.mph is a simply supported beam transducer model. First, we take eight structural parameters of the simply supported beam transducer as variables, analyze their influence on the sensitivity of the transducer, and we make priority judgments and rankings. Next, the optimal size ratios of the piezoelectric element to the piezoelectric beam are calculated, which provides a theoretical reference for improving the sensitivity.According to the parameter priority order and the optimal size ratios obtained from the simply_supported_beam_transducer.mph, the simple supported beam transducer is miniaturized and optimized. The optimized_simply_supported_beam_transducer.mph is the miniaturized and optimized transducer. In addition, the relaxed ferroelectric single crystal material is applied to the transducer to further improve its sensitivity. The optimized simply supported beam transducer finally achieves the design goal; that is, its sensitivity is equivalent to that of the existing cantilever transducer, while the size and weight are smaller and the bandwidth is wider.
DOI: 10.6084/m9.figshare.13341215.v1
title: Supplemental Tables S1-S9

description: Supplementary Tables S1-S9 of "Comparison of Survival of Preterm Newborn Rabbits at 25-28 Days of Gestation with Perinatal Therapies at Birth Transition"
DOI: 10.6084/m9.figshare.17073488.v1
title: Additional file 2 of Rapidly evolving genetic features for desert adaptations in Stipagrostis pennata

description: Additional file 2
DOI: 10.6084/m9.figshare.10257950
title: Effects of 1,25-dihydroxyvitamin D3 on experimental periodontitis and AhR/NF-κB/NLRP3 inflammasome pathway in a mouse model

description: Abstract Vitamin D has been known to have important regulatory functions in inflammation and immune response and shows inhibitory effects on experimental periodontitis in animal models. However, the potential mechanism has yet to be clarified. Recent studies have highlighted Aryl hydrocarbon receptor (AhR) and its downstream signaling as a crucial regulator of immune homeostasis and inflammatory regulation. Objective: This study aimed to clarify the effect of 1,25-dihydroxyvitamin D3 (VD3) on experimental periodontitis and AhR/nuclear factor-κB (NF-κB)/NLR pyrin domain-containing 3 (NLRP3) inflammasome pathway in the gingival epithelium in a murine model. Methodology: We induced periodontitis in male C57BL/6 wild-type mice by oral inoculation of Porphyromonas gingivalis (P. gingivalis), and subsequently gave intraperitoneal VD3 injection to the mice every other day for 8 weeks. Afterwards, we examined the alveolar bone using scanning electron microscopy (SEM) and detected the gingival epithelial protein using western blot analysis and immunohistochemical staining. Results: SEM images demonstrated that alveolar bone loss was reduced in the periodontitis mouse model after VD3 supplementation. Western blot analyses and immunohistochemical staining of the gingival epithelium showed that the expression of vitamin D receptor, AhR and its downstream cytochrome P450 1A1 were enhanced upon VD3 application. Additionally, VD3 decreased NF-κB p65 phosphorylation, and NLRP3, apoptosis-associated speck-like protein, caspase-1, interleukin-1β (IL-1β) and IL-6 protein expression. Conclusions: These results implicate the alleviation of periodontitis and the alteration of AhR/NF-κB/NLRP3 inflammasome pathway by VD3 in the mouse model. The attenuation of this periodontal disease may correlate with the regulation of AhR/NF-κB/NLRP3 inflammasome pathway by VD3.
DOI: 10.6084/m9.figshare.10257950.v1
title: Effects of 1,25-dihydroxyvitamin D3 on experimental periodontitis and AhR/NF-κB/NLRP3 inflammasome pathway in a mouse model

description: Abstract Vitamin D has been known to have important regulatory functions in inflammation and immune response and shows inhibitory effects on experimental periodontitis in animal models. However, the potential mechanism has yet to be clarified. Recent studies have highlighted Aryl hydrocarbon receptor (AhR) and its downstream signaling as a crucial regulator of immune homeostasis and inflammatory regulation. Objective: This study aimed to clarify the effect of 1,25-dihydroxyvitamin D3 (VD3) on experimental periodontitis and AhR/nuclear factor-κB (NF-κB)/NLR pyrin domain-containing 3 (NLRP3) inflammasome pathway in the gingival epithelium in a murine model. Methodology: We induced periodontitis in male C57BL/6 wild-type mice by oral inoculation of Porphyromonas gingivalis (P. gingivalis), and subsequently gave intraperitoneal VD3 injection to the mice every other day for 8 weeks. Afterwards, we examined the alveolar bone using scanning electron microscopy (SEM) and detected the gingival epithelial protein using western blot analysis and immunohistochemical staining. Results: SEM images demonstrated that alveolar bone loss was reduced in the periodontitis mouse model after VD3 supplementation. Western blot analyses and immunohistochemical staining of the gingival epithelium showed that the expression of vitamin D receptor, AhR and its downstream cytochrome P450 1A1 were enhanced upon VD3 application. Additionally, VD3 decreased NF-κB p65 phosphorylation, and NLRP3, apoptosis-associated speck-like protein, caspase-1, interleukin-1β (IL-1β) and IL-6 protein expression. Conclusions: These results implicate the alleviation of periodontitis and the alteration of AhR/NF-κB/NLRP3 inflammasome pathway by VD3 in the mouse model. The attenuation of this periodontal disease may correlate with the regulation of AhR/NF-κB/NLRP3 inflammasome pathway by VD3.
DOI: 10.6084/m9.figshare.12879431.v1
title: Additional file of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file of Alteration of gene expression by alcohol exposure at early neurulation
DOI: 10.6084/m9.figshare.12879431.v2
title: Additional file of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file of Alteration of gene expression by alcohol exposure at early neurulation
DOI: 10.6084/m9.figshare.12879431.v3
title: Additional file of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file of Alteration of gene expression by alcohol exposure at early neurulation
DOI: 10.6084/m9.figshare.12879434
title: Additional file 1 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 1:Keyword and GO categories. List of keywords used and the GO categories identified by these key words for Early Development. (XLS 283 KB)
DOI: 10.6084/m9.figshare.12879434.v1
title: Additional file 1 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 1:Keyword and GO categories. List of keywords used and the GO categories identified by these key words for Early Development. (XLS 283 KB)
DOI: 10.6084/m9.figshare.12879437
title: Additional file 2 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 2:GO gene sets selected by keywords. List of gene sets used in GSEA analyses, derived from GO categories selected by key words for Early Development. Title of each set followed by Entrez Gene Ids of the genes in the set. (XLS 116 KB)
DOI: 10.6084/m9.figshare.12879437.v1
title: Additional file 2 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 2:GO gene sets selected by keywords. List of gene sets used in GSEA analyses, derived from GO categories selected by key words for Early Development. Title of each set followed by Entrez Gene Ids of the genes in the set. (XLS 116 KB)
DOI: 10.6084/m9.figshare.12879440
title: Additional file 3 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 3:GO categories related to Stem Cells. Gene sets used in GSEA analysis based on GO categories related to Stem Cells. Title of each set followed by Entrez Gene Ids of the genes in the set. (XLS 39 KB)
DOI: 10.6084/m9.figshare.12879440.v1
title: Additional file 3 of Alteration of gene expression by alcohol exposure at early neurulation

description: Additional file 3:GO categories related to Stem Cells. Gene sets used in GSEA analysis based on GO categories related to Stem Cells. Title of each set followed by Entrez Gene Ids of the genes in the set. (XLS 39 KB)
DOI: 10.6084/m9.figshare.12879476
title: Additional file 1 of Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

description: Additional file 1:Top BLAST hits from the NCBI NR database. BLAST results against the NCBI NR database for all the unigenes with E-value ≤ 1.0e-5 are shown. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12879476.v1
title: Additional file 1 of Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

description: Additional file 1:Top BLAST hits from the NCBI NR database. BLAST results against the NCBI NR database for all the unigenes with E-value ≤ 1.0e-5 are shown. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12879479
title: Additional file 2 of Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

description: Additional file 2:List of Pfam domain families assigned to C. sinensis unigenes. Domain-based search results from the Pfam database for all the unigenes with E-value ≤ 1.0e-5 are shown. (XLS 596 KB)
DOI: 10.6084/m9.figshare.12879479.v1
title: Additional file 2 of Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

description: Additional file 2:List of Pfam domain families assigned to C. sinensis unigenes. Domain-based search results from the Pfam database for all the unigenes with E-value ≤ 1.0e-5 are shown. (XLS 596 KB)
DOI: 10.6084/m9.figshare.10258046
title: Genotype x environment interaction analysis of multi-environment wheat trials in India using AMMI and GGE biplot models

description: Abstract Fifty wheat genotypes were evaluated at nine diverse locations in India to identify high-yielding and stable genotypes. The analysis of variance based on additive main effects and multiplicative interaction (AMMI) indicated significant genotype, environment and genotype - environment (GE) interactions, with a total variation of 5.99, 20.23 and 73.77%, respectively. A biplot-AMMI analysis and yield stability index incorporating the AMMI stability value and yield in a single non-parametric index were used to discriminate the genotypes with highest and stable yield; the genotypes G135, G125, G104, G112 and G144 were found to be promising. Two mega environments (ME) were identified based on GGE (genotype and GE interaction) biplot analysis and the genotypes G119 and G120 and G107, G148 and G146 performed best in the mega-environments ME I and ME II, respectively. Both approaches allowed the identification of stable genotypes (G112 and G135), which can be included in the national testing program, with a view to release a new variety.
DOI: 10.6084/m9.figshare.10258046.v1
title: Genotype x environment interaction analysis of multi-environment wheat trials in India using AMMI and GGE biplot models

description: Abstract Fifty wheat genotypes were evaluated at nine diverse locations in India to identify high-yielding and stable genotypes. The analysis of variance based on additive main effects and multiplicative interaction (AMMI) indicated significant genotype, environment and genotype - environment (GE) interactions, with a total variation of 5.99, 20.23 and 73.77%, respectively. A biplot-AMMI analysis and yield stability index incorporating the AMMI stability value and yield in a single non-parametric index were used to discriminate the genotypes with highest and stable yield; the genotypes G135, G125, G104, G112 and G144 were found to be promising. Two mega environments (ME) were identified based on GGE (genotype and GE interaction) biplot analysis and the genotypes G119 and G120 and G107, G148 and G146 performed best in the mega-environments ME I and ME II, respectively. Both approaches allowed the identification of stable genotypes (G112 and G135), which can be included in the national testing program, with a view to release a new variety.
DOI: 10.6084/m9.figshare.7636646
title: RNA cleavage by Lassa fever virus L protein and Mutants

description: RNA cleavage activity of Lassa fever virus L protein and mutants<br>
DOI: 10.15156/bio/sh435908.07fu
title: SH435908.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh435909.07fu
title: SH435909.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1803148.08fu
title: SH1803148.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1803149.08fu
title: SH1803149.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh435910.07fu
title: SH435910.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.