cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3631778_d1
title: Additional file 3: of “Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run”

description: Dataset S1. Gene lists of bZIP1 targets identified in 4tU-labeled fractions and ChIP-Seq replications. (XLSX 204 kb)
DOI: 10.15468/dl.x5xmsc
title: Occurrence Download

description: A dataset containing 4104 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Capture Mark Recapture Data for Scottish Elasmobranchs: 2009-2018"
 ]
}

 The dataset includes 4104 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032137-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631670_d1
title: Additional file 1: of Usefulness of ascitic fluid lactoferrin levels in patients with liver cirrhosis

description: The raw data of this study. All study materials and data are available. (XLS 74Â kb)
DOI: 10.6084/m9.figshare.c.3631715_d1
title: Additional file 1. of Comparative morphology and development of extra-ocular muscles in the lamprey and gnathostomes reveal the ancestral state and developmental patterns of the vertebrate head

description: Homology and developmental patterning of EOMs. (XLS 29 kb)
DOI: 10.15468/dl.mjumts
title: Occurrence Download

description: A dataset containing 7941 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Ara ararauna (Linnaeus, 1758))"
 ]
}

 The dataset includes 7941 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631577_d1
title: Additional file 2: of Evaluation of a comprehensive intervention with a behavioural modification strategy for childhood obesity prevention: a nonrandomized cluster controlled trial

description: Individual prescription. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3631340_d6
title: Additional file 2: Table S1. of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: List of differential expressed genes (at gene level) in early growth fruits. Expression values of the 1945 differentially expressed genes in early growth fruits identified by comparison of gene expression between two consecutive stages. Differentially expressed genes were identified by the Cuffdiff program with a cutoff of FDR &lt;0.05. (XLS 735Â kb)
DOI: 10.6084/m9.figshare.c.3631340_d7
title: Additional file 5: Table S4. of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: Newly identified transcription regions. Description of data: Information about the 2650 unique transcripts assembled from new transcription regions. (XLS 1496Â kb)
DOI: 10.6084/m9.figshare.c.3631340_d5
title: Additional file 3: Table S2. of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: List of differentially expressed splice variants in early growth fruits. Expression values (FPKM) of the 7959 differentially expressed splice variants in early growth fruits identified by comparison of gene expression between two consecutive stages. Splice variants with expression values of FPKM &gt; =1 and fold changes (FC) &gt; =4 were considered to be differentially expressed. (XLS 2480 kb)
DOI: 10.6084/m9.figshare.c.3631340_d4
title: Additional file 4: Table S3. of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: List of differentially expressed genes (at isoform level) in early growth fruits. Expression values (FPKM) of the 1059 differentially expressed annotated transcripts in early growth fruits identified by comparison of gene expression between two consecutive stages. Genes with expression values of FPKM &gt; =1 and fold changes (FC) &gt; =4 were considered to be differentially expressed. (XLS 955 kb)
DOI: 10.6084/m9.figshare.c.3631340_d1
title: Additional file 7: of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: AS landscape. The output from ASTALAVISTA analysis. All the AS events identified in this study. The data includes information on AS types and chromosomal coordinates. The file is tab-separated with one AS event per line, each one has following fields:     . TranscriptID1 and 2 are the two transcripts involved in a given AS event. For the exon-intron structure of the AS event, exon skipping (ES) is indicated by 1-2^,0, alternative donor (AD) by 1^,2^, alternative acceptor (AA) by 1-,2- and intron retention (IR) by 1^2-,0. More detailed description on the AS code (the exon-intron structure) can be found on the ASTALAVISTA webpage ( http://genome.crg.es/astalavista/FAQ.html ). (TXT 3580 kb)
DOI: 10.6084/m9.figshare.c.3631340_d2
title: Additional file 8: Table S5. of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: Primers used in this study. Description of data: information of primers used in this study. (XLS 38Â kb)
DOI: 10.6084/m9.figshare.c.3631316_d1
title: Additional File 1:

description: Table S1. Genes whose genomic alterations associated with drug sensitivity (Mannâ  Whitney U test, adjusted pÂ
DOI: 10.15468/dl.by3t6m
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alopias vulpinus (Bonnaterre, 1788)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032140-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631091_d7
title: Additional file 3: Table S3: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 25â  27 DAF (S3-G3). (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3631091_d6
title: Additional file 1: Table S1: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 5â  7 DAF (S1-G1). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3631091_d4
title: Additional file 7: Table S7: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: Lipid-related DEGs in Brassica napus and their lipid-related homologous genes in arabidopsis. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3631091_d5
title: Additional file 5: Table S5: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The lipid-related homologous genes in arabidopsis for the genes in QTL regions. (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3631091_d3
title: Additional file 6: Table S6: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The gi number of genes in NR database homologous with DEGs between varieties in QTL regions. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3631091_d1
title: Additional file 2: Table S2: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 15â  17 DAF (S2-G2). (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3631091_d2
title: Additional file 4: Table S4: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The physical location of the oil related QTLs. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3630986_d2
title: Additional file 1: of Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes

description: Table S1. Nomenclature and chromosomal location of bZIP family genes in wheat, T.urartu, Ae.tauschii, barley and Brachypodium. Table S2. Orthologs and in-paralogs in bZIP family between each pair of wheat and its relatives. Table S3. Numbers of differentially expressed bZIP genes in five comparison groups. Table S4. Lists of differentially expressed bZIP genes in five comparison groups. Table S5. In-paralog pairs within 23 TabZIP proteins we studied. Table S6. Distribution of cis-acting elements in promoter regions of TabZIP genes. Table S7. Functions of cis-acting elements in promoter regions of TabZIP genes. Table S8. Wheat lines, growth conditions, and sampling timepoints for microarray data analysis. The sample features were represented by the wheat line name and a letter (A, B, E or F) followed by a number referring to the anther length when samples were taken. The letters ‘A’, ‘B’, ‘E’ and ‘F’ indicated the growth conditions of wheat lines. ‘A’: 10 °C with a 12 h-light/12 h-dark photoperiod; ‘B’: 10 °C with a 14 h-light/10 h-dark photoperiod; ‘E’: 20 °C with a 12 h-light/12 h-dark photoperiod; ‘F’: 20 °C with a 14 h-light/10 h-dark photoperiod. (ZIP 146 kb)
DOI: 10.6084/m9.figshare.c.3630983_d2
title: Additional file 2: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: An excel file listing the primers used in the 4C-Seq analysis. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3630983_d3
title: Additional file 3: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: An excel file listing the primers used to clone the enhancers in the transgenic assays. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3630986_d1
title: Additional file 2: of Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes

description: Figure S1. Orthologous bZIP genes between T.urartu and Ae.tauschii. Figure S2. Distribution of bZIP family genes in subgroups and clades. bZIP family genes of wheat, T.urantu, Ae.tauschii, rice and Arabidopsis were divided into 10 subgroups and 4 clades. The number in the bracket indicated the total number of bZIP family genes in the corresponding genome. Figure S3. Phylogenetic relationship of 23 TabZIP proteins and 8 known floral development related bZIP proteins. Figure S4. Distribution of conserved motifs in 23 TabZIP and 8 known floral development related bZIP proteins. Figure S5. Morphological characteristics of floral organs and pollen iodine staining. The wheat materials were taken from Fuyang (Anhui Province), where Jing411, TY806 and F1 were male-fertile while BS366 was male-sterile. The first row showed the stamen and pistils before blooming; The second row showed anthers after blooming; The third row showed iodine staining results of pollen grains; The fourth row showed the statistical data of pollen iodine staining. The total pollen count used for data statistics was about 250 in four wheat lines. A, B, C and D meant 4 different kinds of shape-color types for pollen grains after iodine staining: (A) circular, opaque and dark brown-black; (B) circular, opaque or partially transparent and light brown-black; (C) circular, transparent and light yellow; (D) transparent in an irregular shape and light yellow. Figure S6. Number of bZIP family members in each genome (or sub-genome) and number of ortholog pairs between each pair of genomes and sub-genomes. Each box presented a genome or sub-genome, and the numbers in the boxes referred to the sums of bZIP family members in respective genomes. The number besides the straight line connecting each pair of genomes and sub-genomes indicated the sum of ortholog pairs between them. (ZIP 2480 kb)
DOI: 10.6084/m9.figshare.c.3630983_d1
title: Additional file 1: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: Figures S1â  S6. (ZIP 3593 kb)
DOI: 10.6084/m9.figshare.c.3630905_d2
title: MOESM2 of Identification of acetyltransferase genes (HAT1 and KAT8) regulating HBV replication by RNAi screening

description: Additional file 2: Table S2. Primers for pgRNA and qRT-PCR.
DOI: 10.6084/m9.figshare.c.3630905_d1
title: MOESM1 of Identification of acetyltransferase genes (HAT1 and KAT8) regulating HBV replication by RNAi screening

description: Additional file 1: Table S1. Oligos and scramble shRNA sequences.
DOI: 10.15468/dl.7dg8gk
title: Occurrence Download

description: A dataset containing 92869 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mytilus edulis Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 92869 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630473_d3
title: Additional file 2: of Classification and characterization of class III malocclusion in Chinese individuals

description: Principal Component 1 and Principal Component 2. Principal Component 1 displays the variables of each principal component and Principal Component 2 shows the variance explained by each principal component. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3630473_d2
title: Additional file 3: of Classification and characterization of class III malocclusion in Chinese individuals

description: Results of Cluster Analysis. This file shows the original results of the cluster analysis. (XLSX 55 kb)
DOI: 10.17632/n9zp473wfw.1
title: Image Dataset on Eye Diseases Classification (Uveitis, Conjunctivitis, Cataract, Eyelid) with Symptoms and SMOTE Validation

description: Dataset Description:
This dataset contains images and corresponding symptom descriptions for five types of eye diseases: Uveitis, Conjunctivitis, Cataract, Eyelid Drooping, and Normal. The dataset is intended for use in medical image analysis and machine learning model development. It includes image data (.jpg format) along with detailed descriptions of the diseases and their symptoms.

Diseases Included:
Normal: No abnormalities, clear vision, no redness or swelling.
Uveitis: Eye redness, pain, blurred vision, sensitivity to light, and floating spots.
Conjunctivitis: Redness, itching, tearing, discharge, and crusting of the eyelids.
Cataract: Cloudy or blurred vision, difficulty seeing at night, sensitivity to glare.
Eyelid Drooping: Drooping eyelids, swelling, irritation, and lumps on more than one eyelid.
Symptoms:
Each disease is associated with its symptoms as listed above. These symptoms are designed to help researchers and practitioners in the classification and diagnosis of these diseases based on visual and textual information. All the symptoms and dataset has been checked and corrected from a Professor from Bangladesh Eye Hospital.

Data Collection:
Images: The images were collected from online sources (via Google search) using disease-specific keywords.
Data Quality Control: Duplicate images were removed, and the dataset was carefully reviewed for accuracy.
Balanced Dataset: To ensure a balanced distribution of images across all diseases, SMOTE (Synthetic Minority Over-sampling Technique) was applied. The final dataset includes an equal number of images for each disease category (649 images per disease).

Dataset Validation: 
Before SMOTE:
Cataract: 544 images
Conjunctivitis: 357 images
Eyelid Drooping: 525 images
Normal: 649 images
Uveitis: 223 images

After SMOTE:
All diseases now have 649 images, resulting in a balanced dataset.

The use of SMOTE ensures that all disease categories are equally represented, mitigating the risk of model bias due to class imbalance. 

File Formats:
Images: JPEG format (.jpg) 

Dataset Usage:
This dataset is intended for research purposes, specifically in medical image classification tasks. It can be used to train, test, and validate machine learning models that aim to identify and diagnose eye diseases based on images and symptoms.

Ethics & Consent:
The images used in this dataset have been gathered from publicly available online sources, and appropriate ethical considerations were taken into account. The dataset has been anonymized, and no personally identifiable information is included.
DOI: 10.17632/n9zp473wfw.2
title: Image Dataset on Eye Diseases Classification (Uveitis, Conjunctivitis, Cataract, Eyelid) with Symptoms and SMOTE Validation

description: Dataset Description:
This dataset contains images and corresponding symptom descriptions for five types of eye diseases: Uveitis, Conjunctivitis, Cataract, Eyelid Drooping, and Normal. The dataset is intended for use in medical image analysis and machine learning model development. It includes image data (.jpg format) along with detailed descriptions of the diseases and their symptoms.

Diseases Included:
Normal: No abnormalities, clear vision, no redness or swelling.
Uveitis: Eye redness, pain, blurred vision, sensitivity to light, and floating spots.
Conjunctivitis: Redness, itching, tearing, discharge, and crusting of the eyelids.
Cataract: Cloudy or blurred vision, difficulty seeing at night, sensitivity to glare.
Eyelid Drooping: Drooping eyelids, swelling, irritation, and lumps on more than one eyelid.
Symptoms:
Each disease is associated with its symptoms as listed above. These symptoms are designed to help researchers and practitioners in the classification and diagnosis of these diseases based on visual and textual information. All the symptoms and dataset has been checked and corrected from a Professor from Bangladesh Eye Hospital.

Data Collection:
Images: The images were collected from online sources (via Google search) using disease-specific keywords.
Data Quality Control: Duplicate images were removed, and the dataset was carefully reviewed for accuracy.
Balanced Dataset: To ensure a balanced distribution of images across all diseases, SMOTE (Synthetic Minority Over-sampling Technique) was applied. The final dataset includes an equal number of images for each disease category (649 images per disease).

Dataset Validation: 
Before SMOTE:
Cataract: 544 images
Conjunctivitis: 357 images
Eyelid Drooping: 525 images
Normal: 649 images
Uveitis: 223 images

After SMOTE:
All diseases now have 649 images, resulting in a balanced dataset.

The use of SMOTE ensures that all disease categories are equally represented, mitigating the risk of model bias due to class imbalance. 

File Formats:
Images: JPEG format (.jpg) 

Dataset Usage:
This dataset is intended for research purposes, specifically in medical image classification tasks. It can be used to train, test, and validate machine learning models that aim to identify and diagnose eye diseases based on images and symptoms.

Ethics & Consent:
The images used in this dataset have been gathered from publicly available online sources, and appropriate ethical considerations were taken into account. The dataset has been anonymized, and no personally identifiable information is included.
DOI: 10.17632/6j6zftdzw8.1
title: Exercise-driven gut microbiota alterations enhance colonization resistance against methicillin-resistant Staphylococcus aureus

description: Confocal microscope and Western blot Original image
DOI: 10.15468/dl.32hvgu
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaenoptera edeni Anderson, 1879",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032142-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/t9nxzy2mwt.1
title: Spectral reflectance of soil samples with different particle sizes

description: A total of 449 soil samples were collected from the study area. Each sample was crushed and sieved using soil screens with different mesh sizes (150, 80, 60, 45, 35, and 30 mesh), resulting in soil samples with particle sizes of 0.1, 0.2, 0.3, 0.4, 0.5, and 0.6 mm, respectively, which were labeled as DA1, DA2, DA3, DA4, DA5, and DA6. The reflectance images of the soil samples with varying particle sizes were captured using a Specim IQ hyperspectral imaging system, and the raw data were subsequently converted into reflectance data.
The Mahalanobis distance method was employed to analyze the measured total nitrogen (TN) content of all soil samples. Outlier samples exceeding three times the average Mahalanobis distance were excluded. This process resulted in the removal of 144 soil spectral samples from 24 sampling points across the six particle sizes, leaving a total of 2,550 soil spectral samples from 425 sampling points with six particle sizes.
The resulting dataset comprises reflectance information for 2,550 soil spectral samples across six particle sizes from 425 retained sampling points.
DOI: 10.6084/m9.figshare.c.3630299_d11
title: Additional file 8: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: The down-methylated genes and functions on E60 versus E50. (XLSX 142Â kb)
DOI: 10.6084/m9.figshare.c.3630299_d9
title: Additional file 6: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: The list of differentially methylated genes. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3630299_d6
title: Additional file 11: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: The genes identified by signal-net analysis. (XLS 51Â kb)
DOI: 10.6084/m9.figshare.c.3630317_d1
title: Additional file 1: Table S1. of Gene name errors are widespread in the scientific literature

description: List of supplementary files containing Excel gene name errors from journals and Gene Expression Omnibus (GEO). (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3630299_d4
title: Additional file 9: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: Significant pathways related with up-methylated genes and the genes involved. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3630299_d1
title: Additional file 10: of Genome-wide DNA methylation profile of developing deciduous tooth germ in miniature pigs

description: Significant pathways related with down-methylated genes and the genes involved. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3630254_d4
title: Additional file 4: of Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing

description: Annotation of three candidate CRISPR clusters on the chromosome sequence and one CRISPR cluster on the plasmid using strict parameters. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3630254_d2
title: Additional file 2: of Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing

description: The COG function annotation in each COG cluster. (XLSX 114Â kb)