cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0np22tk
title: Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit

description: Signaling networks are spatiotemporally organized in order to sense
 diverse inputs, process information, and carry out specific cellular
 tasks. In pancreatic β cells, Ca2+, cyclic adenosine monophosphate (cAMP),
 and Protein Kinase A (PKA) exist in an oscillatory circuit characterized
 by a high degree of feedback. Here, we describe a mode of regulation
 within this circuit involving a spatial dependence of the relative phase
 between cAMP, PKA, and Ca2+. We show that nanodomain clustering of
 Ca2+-sensitive adenylyl cyclases drives oscillations of local cAMP levels
 to be precisely in-phase with Ca2+ oscillations, whereas Ca2+-sensitive
 phosphodiesterases maintain out-of-phase oscillations outside of the
 nanodomain. Disruption of this precise phase relationship perturbs Ca2+
 oscillations, suggesting the relative phase within an oscillatory circuit
 can encode specific functional information. This work unveils a novel
 mechanism of cAMP compartmentation utilized for localized tuning of an
 oscillatory circuit and has broad implications for the spatiotemporal
 regulation of signaling networks.
description: MIN6 pancreatic beta cells expressing FRET-based biosensors were
 imaging using an epifluorescent microscope. FRET ratio was calculated
 using sensitized emission channel / donor excited channel (PKA sensor) or
 vice versa for cAMP (inverse FRET sensor). Single-cell time traces were
 collected and analyzed with MATLAB to study compartmentalized oscillatory
 dynamics.
description: Please read the readme.
DOI: 10.5061/dryad.bnzs7h46v
title: Measurement data of the industrial IoT scenario

description: In these measurements considered in this dataset, 15 measurement
 points are deployed in the scenario. They are sorted in two groups. Among
 line 1, all measurement points are LoS scenarios. Among line 2,
 measurement points 1, 2, 3, 4, 5,and 7 are LoS scenarios, and measurement
 points 6, 8, 9 are NLoS scenarios. Due to the limitation of the cable
 length, measurement data of line 2 locations 1-6 is collected at mmwave
 band. The heights of the Tx antenna and the Rx antenna are 2.05 m and 1.45
 m, respectively.  The bandwidth of the intermediate frequency
 filter of the adopted VNA is 2 kHz. Both the Tx and the Rx antennas are
 omnidirectional antennas. 200 snapshots are collect at each Rx location.
 In terms of the 3-4 GHz  data, the bandwidth is 1 GHz. The number
 of frequency points swept in each snapshot is 501. In the aspect
 of 38-39 GHz and 39-40 GHz data, the center frequencies
 are 38.5 GHz and 39.5 GHz with 1 GHz bandwidth, respectively. The number
 of frequency points swept in each snapshot is also 501.
description: This dataset is collected in a large-scale textile factory, a
 typical representative of most of the textile production workshops of
 exact enterprises. The channel measurement equipment applied in the
 measurements consists of a programmable vector network analyzer and
 necessary auxiliaries. An extensive amount of data in line-of-sight (LoS)
 and non-line-of-sight (NLoS) scenarios is collected with omnidirectional
 antennas in both transmitter and receiver ends. This dataset contains raw
 data and calibration data.
DOI: 10.5061/dryad.931zcrjgd
title: Drought conditions alter litter decomposition and nutrient release of litter types in an agroforestry system of China

description: Evaluating how decomposition rates and litter nutrient release of
 different litter types respond to changes in water conditions is crucial
 for understanding global carbon and nutrient cycling. However, it is
 unclear how decreasing water affects litter mixture interactions for the
 maize–poplar system in arid regions. Here, the responses of the litter
 decomposition process and litter mixture interactions in the agroforestry
 system to changes in water conditions (control, light drought, and
 moderate drought) were tested. Moderate drought significantly decreased
 the decomposition rate for poplar leaf and mixed litters, and
 decomposition rate was significantly reduced for maize straw litter in
 light and moderate drought stress. The mass loss rates of maize straw and
 mixed litters were significantly higher than that of the poplar leaf
 litter under drought conditions, but there was no significant difference
 among the three litter types in the control. There was no interaction
 between mass loss of the mixed litter in the control and light drought
 conditions, and the litter mixture interaction showed non-additive
 synergistic interactions under moderate drought. In terms of nutrient
 release, there was also no interaction between litter mixture with
 nitrogen and carbon, but there was antagonistic interaction with potassium
 release under the light drought condition. Our results demonstrate that
 drought conditions can lead to decreasing decomposition rate and strong
 changes in the litter mixture interactions from additive effects to
 non-additive synergistic effects in moderate drought. Moreover, light
 drought changed the mixture interaction from an additive effect to an
 antagonistic interaction for potassium release.
DOI: 10.5061/dryad.6hdr7sqwv
title: Preconcentration with Chlorella vulgaris combined with energy dispersive X-ray fluorescence spectrometry for rapid determination of Cd in water

description: Rapid, real-time and on-line detection of Cd in water samples has very
 important practical significance for preventing water pollution from heavy
 metals and protecting the safety of human being and ecological
 environment. X-ray fluorescence spectrometry (XRF) is an important and
 effective spectroscopy technology for the rapid, real-time and on-line
 detection of heavy metals. However, for the direct detection of heavy
 metals in water samples, due to matrix effects, XRF spectrometry has the
 disadvantages of low signal-to-noise ratio, poor sensitivity and poor
 stability, which cannot meet the requirements for rapid detection of heavy
 metals in environmental waters and industrial wastewaters. In order to
 improve the shortcomings of XRF spectrometry in direct detection of heavy
 metals in water samples, we selected Chlorella vulgaris as an adsorbent,
 and innovatively proposed a simple, rapid, economical and environmentally
 friendly method for the detection of Cd in water based on preconcentration
 with Chlorella vulgaris combined with energy dispersive X-ray fluorescence
 (EDXRF) spectrometry. This dataset includes the important data in the
 study of preconcentration with Chlorella vulgaris combined with energy
 dispersive X-ray fluorescence spectrometry for rapid determination of Cd
 in water.Rapid, real-time and on-line detection of Cd in water samples has
 very important practical significance for preventing water pollution from
 heavy metals and protecting the safety of human being and ecological
 environment. X-ray fluorescence spectrometry (XRF) is an important and
 effective spectroscopy technology for the rapid, real-time and on-line
 detection of heavy metals. However, for the direct detection of heavy
 metals in water samples, due to matrix effects, XRF spectrometry has the
 disadvantages of low signal-to-noise ratio, poor sensitivity and poor
 stability, which cannot meet the requirements for rapid detection of heavy
 metals in environmental waters and industrial wastewaters. In order to
 improve the shortcomings of XRF spectrometry in direct detection of heavy
 metals in water samples, we selected Chlorella vulgaris as an adsorbent,
 and innovatively proposed a simple, rapid, economical and environmentally
 friendly method for the detection of Cd in water based on preconcentration
 with Chlorella vulgaris combined with energy dispersive X-ray fluorescence
 (EDXRF) spectrometry. This dataset includes the important data in the
 study of preconcentration with Chlorella vulgaris combined with energy
 dispersive X-ray fluorescence spectrometry for rapid determination of Cd
 in water.
DOI: 10.5061/dryad.fxpnvx0nm
title: Data from: Going the distance: Influence of distance between boat noise and nest site on the behavior of paternal smallmouth bass

description: The effects of anthropogenic noise have garnered significant attention in
 marine ecosystems, but comparatively less is known about its impacts on
 freshwater ecosystems. For fish that provide parental care, the effects of
 acoustic disturbance could have fitness-level consequences if nest tending
 behavior is altered. This study explored the effects of motorboat noise on
 the parental behavior of nesting male smallmouth bass (Micropterus
 dolomieu; Lacépède, 1802), an important freshwater game fish in North
 America that provides sole paternal care to offspring. Specifically, we
 evaluated how boat noise proximity to a bass nest (ranging from 4.5 to 90
 m) influenced paternal care behaviors. A total of 73 fish were exposed to
 a 3-min motorboat playback designed to simulate a boat sound that
 typically occurs in areas near littoral nesting sites. The fish were video
 recorded, and their behaviors were analyzed before, during, and after
 exposure to the playback. Residency time was the only behavioral metric to
 be adversely affected by noise playbacks but only when in close proximity
 to the speaker. Our results suggest that boat noise may have an impact on
 bass reproductive fitness in specific contexts where combustion motors are
 used near shore during the nesting period. The largely null findings may
 indicate a resilience to boat noise and/or habituation to the noise. In
 addition, boats displace water and create waves that represent another
 form of disturbance that could be experienced by fish but was not
 simulated here. Future research should integrate behavioral and
 physiological responses to boat noise and other aspects of boat
 disturbance to better understand the fitness impacts of boating activity
 on freshwater fish.
DOI: 10.15468/dl.59uqtg
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acosmium lentiscifolium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 146 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002198-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.tx95x69t8
title: Phylogenomics of monitor lizards and the role of competition in dictating body size disparity

description: Organismal interactions drive the accumulation of diversity by influencing
 species ranges, morphology, and behavior. Interactions vary from agonistic
 to cooperative and should result in predictable patterns in trait and
 range evolution. However, despite a conceptual understanding of these
 processes, they have been difficult to model, particularly on
 macroevolutionary timescales and across broad geographic spaces. Here we
 investigate the influence of biotic interactions on trait evolution and
 community assembly in monitor lizards (Varanus). Monitors are an iconic
 radiation with a cosmopolitan distribution and the greatest size disparity
 of any living terrestrial vertebrate genus. Between the colossal Komodo
 dragon Varanus komodoensis and the smallest Australian dwarf goannas,
 Varanus length and mass vary by multiple orders of magnitude. To test the
 hypothesis that size variation in this genus was driven by character
 displacement, we extended existing phylogenetic comparative methods which
 consider lineage interactions to account for dynamic biogeographic history
 and apply these methods to Australian monitors and marsupial predators.
 Incorporating both exon-capture molecular and morphological datasets we
 use a combined evidence approach to estimate the relationships among
 living and extinct varaniform lizards. Our results suggest that
 communities of Australian Varanus show high functional diversity as a
 result of continent-wide interspecific competition among monitors but not
 with faunivorous marsupials. We demonstrate that patterns of trait
 evolution resulting from character displacement on continental scales are
 recoverable from comparative data and highlight that these
 macroevolutionary patterns may develop in parallel across widely
 distributed sympatric groups.
description: This Dryad project holds the molecular, morphological, and
 distributional data, as well as R scripts and walk-throughs of the
 analyses required to repeat our study on monitor lizard phylogenetics and
 evolution. Data and code (with the exception of molecular alignments) can
 also be found at:<br>
 www.github.com/IanGBrennan/MonitorPhylogenomics
DOI: 10.5061/dryad.8pk0p2njj
title: Mass loss and nutrient release during the decomposition of sixteen types of plant litter with contrasting quality under three precipitation regimes

description: Mass loss and nutrient release during litter decomposition drive
 biogeochemical cycling in terrestrial ecosystems. However, the
 relationship between the litter decomposition process and the
 decomposition stage, precipitation and litter quality has rarely been
 addressed, precluding our understanding of how litter decomposition
 regulates nutrient cycling in various ecosystems and their responses to
 climate change. In this study, we measured mass loss as
 well as carbon and nutrient releases during the decomposition of 16 types
 of leaf litter under three precipitation treatments over 12 months in a
 common garden experiment (i.e., using standardized soil and climatic
 conditions). Sixteen types of leaves were divided into 3
 functional groups (evergreen, deciduous, herbaceous). The objectives were
 to understand the effects of decomposition stages and precipitation
 regimes on litter decomposition and to examine the relationship between
 this effect and chemical properties. The mass loss and release of nitrogen
 and potassium were significantly higher in the 6-12 month stage of
 decomposition (high temperature and humidity) than in the 0-6 month stage.
 Phosphorus was relatively enriched in evergreen leaves after 6 months of
 decomposition. The rates of mass loss and nutrient release were
 significantly greater in herbaceous than in deciduous and evergreen
 leaves. Increasing precipitation from 400 to 800 mm accelerated mass loss
 and potassium release but decreased phosphorus release in the 0-6 month
 stage of decomposition. These results highlighted the contribution to and
 complexity of litter chemical properties in litter decomposition.
description:  After 12 months of field
 tests, a large number of samples have been tested in the laboratory to
 obtain test data.  All the statistical analyses were carried out using
 SPSS software (Version 19.0, IBM, USA). Principal component regression
 analysis was performed using the R software package v.3.3.2 (R Core Team
 2018).
description: In this study, we selected leaves from 16 species that are widely
 distributed in Shaanxi Province and vary markedly in their leaf chemical
 properties.  The 16 species belonged to 6 deciduous trees, 4 evergreen
 trees, and 6 herbaceous.we defined the early and late stages of
 decomposition as the 0-6 and 6-12 month decomposition, respectively. Tthe
 designed precipitation treatments were 400, 600 and 800 mm per year. The
 litter before decomposition was prepared for the analysis of the
 concentrations of C, N, P, K, lignin and cellulose. The samples after 6
 and 12 months of decomposition were prepared for the analysis of the C, N,
 P and K concentrations. There are missing values in the data.
DOI: 10.5061/dryad.z8w9ghx7z
title: Critical thermal maxima of early life stages of three tropical fishes: effects of rearing temperature and experimental heating rate

description: Marine ectotherms are often sensitive to thermal stress, and certain life
 stages can be particularly vulnerable (e.g., larvae or spawners). In this
 study, we investigated the critical thermal maxima (CTmax) of larval and
 early juvenile life stages of three tropical marine fishes (Acanthochromis
 polyacanthus, Amphiprion melanopus, and Lates calcarifer). We tested for
 potential effects of developmental acclimation, life stage, and
 experimental heating rates, and we measured metabolic enzyme activities
 from aerobic (citrate synthase, CS) and anaerobic pathways (lactate
 dehydrogenase, LDH). A slightly elevated rearing temperature neither
 influenced CTmax nor CS activity, which otherwise could have indicated
 thermal acclimation. However, we found CTmax to either remain stable
 (Acanthrochromis polyacanthus) or increase with body mass during early
 ontogeny (Amphiprion melanopus and Lates calcarifer). In all three
 species, faster heating rates lead to higher CTmax. Acute temperature
 stress did not change CS or LDH activities, suggesting that overall
 aerobic and anaerobic metabolism remained stable. Lates calcarifer, a
 catadromous species that migrates from oceanic to riverine habitats upon
 metamorphosis, had higher CTmax than the two coral reef fish species. We
 highlight that, for obtaining conservative estimates of a fish species’
 upper thermal limits, several developmental stages and body mass ranges
 should be examined. Moreover, upper thermal limits should be assessed
 using standardized heating rates. This will not only benefit comparative
 approaches but also aid in assessing geographic (re-) distributions and
 climate change sensitivity of marine fishes.
DOI: 10.5061/dryad.dv41ns1v2
title: Bi-objective optimization for last-train coordination planning with dwell time adjustment strategy

description: In the design of last-train coordination plan, adjusting
 (extending/reducing) dwell time can balance economic and service goals for
 operation company and late-night passengers, especially when
 transfer-passenger flow is uncertain. For this purpose, we first
 develop a
 bi-objective scenario-based stochastic programming model
 for last-train coordination planning problem combined
 with the dwell time adjustment strategy. Then,
 we develop a two-phase approach, wherein the first phase we adopt
 the varepsilon-constraint method to reformulate the original model to a
 modified single-objective one. This is followed by the second phase using
 the branch-and-bound algorithm implemented by the CPLEX solver to
 obtain Pareto-optimal solutions (frontier). Finally, we
 demonstrate the advantage of the proposed model through comparison with
 the corresponding model without dwell time strategy and the max-min robust
 model over a randomly generated small-scale network. Moreover, we also
 illustrate the application of the proposed model by a real-world case
 study on the large-scale Beijing subway network.
DOI: 10.5061/dryad.vhhmgqnq9
title: Regrowth strategies of Leymus chinensis in response to different grazing intensities

description: In temperate grassland ecosystems, grazing can affect plant growth by
 foraging, trampling and excretion. The ability of dominant plant species
 to regrow after grazing is critical, since it allows the regeneration of
 photosynthetic tissues to support growth. We conducted a field experiment
 to evaluate the effects of different grazing intensities (control, light,
 medium, and heavy) on the physiological and biochemical responses of
 Leymus chinensis and the carbon (C) sources utilized during regrowth.
 Light grazing promoted regrowth and photoassimilate storage of L.
 chinensis, by increasing the net photosynthetic rate (Pn), photosynthetic
 quenching, light interception, sugar accumulation, sucrose synthase
 activities, and fructose supply from stems. At medium grazing intensity,
 L. chinensis had low Pn, light interception, and sugar accumulation, but
 higher expression of a sucrose transporter gene (LcSUT1) and water-use
 efficiency, which reflected a tendency to store C in belowground to
 promote survival. This strategy was associated with regulation by abscisic
 acid (ABA), jasmonate, and salicylic acid (SA) signaling. However, L.
 chinensis tolerated heavy grazing by increased ABA and jasmonate-induced
 promotion of C assimilation and osmotic adjustment, combined with
 photoprotection against photo-oxidation, suggesting a strategy based on
 regrowth. In addition, stems were the main C source organs and energy
 supply rather than roots. Simultaneously, SA represented a weaker defense
 than ABA and jasmonate. Therefore, L. chinensis adopted different
 strategies for regrowth under different grazing intensities, and light
 grazing promoted regrowth the most. Our results demonstrate the regulation
 of C reserves utilization by phytohormones, and this regulation provides
 an explanation for recent results about grazing responses.
DOI: 10.5061/dryad.8w9ghx3hk
title: Effect of parental phenotype on dispersal, growth and maturation of offspring in wild masu salmon

description:   Offspring traits are influenced by complex interactions between
 parent phenotypes. However, ecological studies of these effects in animals
 living in their natural environment have tended to be more focussed on
 maternal than paternal influences. In this study, we investigated the
 effects of both parental phenotypes on offspring natal dispersal patterns,
 growth and early sexual maturity in masu salmon living in natural streams.
 We used wild-caught parental fish in a half-sib mating design that allowed
 comparison of offspring from males of two different life-history types
 (fast-growing precocious (sneaker) males that had spent their entire lives
 in only freshwater and slow-growing anadromous males that had migrated to
 the sea as juveniles and returned to fresh water to spawn at maturity).
 These males were mated with anadromous females and the eggs planted in
 natural streams in three years. Natal dispersal distance/direction
 depended on offspring sex and paternal life history: female offspring
 moved further downstream than males, whilst amongst males the offspring of
 precocious fathers tended to remain further upstream than those of
 anadromous sires. There was a maternal effect on offspring growth, with
 larger eggs resulting in larger offspring at least until these became
 precociously mature at the end of the first summer. However, while faster
 growing male offspring were more likely to become precociously mature and
 the incidence of male precocious maturity differed among families, there
 was no evidence that the threshold size for precocious maturation was
 influenced by whether the father had himself been precocious. We conclude
 that, although the dispersal of young salmon was significantly influenced
 by both paternal and maternal effects, their growth rate and divergence in
 life history types were mainly environmentally driven. The results suggest
 that in the natural environment, sex-specific dispersal patterns dependent
 on the life history of the sire can alter levels of competition faced by
 offspring, making it more difficult to detect other parental effects on
 offspring performance.