cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21835419
title: Inversion of soil moisture and its feedback on ecological restoration in arid and semi-arid areas of northwest China

description: ABSTRACT Soil moisture (SM) plays an important role in regulating the global water cycle, especially in arid areas, and is one of the main indicators of ecological environmental health. Although traditional methods can accurately measure SM at a single sample site, they are limited in large-scale and dynamic SM monitoring. Therefore, we used the Landsat images as the data source and the soil adjusted vegetation index (SAVI) to build the adjusted SAVI (aSAVI) index by modifying the soil adjustment parameter L and introducing the short-wave infrared band. According to the theory of temperature vegetation dryness index (TVDI) and feature space, we introduced a model, combined the measured SM data (Minqin Basin, China) through a comparative analysis of four vegetation indices (NDVI, SAVI, MSAVI, aSAVI) determine the optimal model. Taking the Minqin Basin as the study area, the spatiotemporal variation characteristics of SM in three sub-regions (the entire study area, irrigated region, and periphery of the irrigated regions) were quantitatively analyzed and compared in four different periods: pre-Comprehensive Treatment Program of the Shiyang River Basin (pre-CTSRB) (2000–2005), CTSRB I (2006–2010), CTSRB II (2011–2016), and CTSRB-end (2017–2021) to evaluate the ecological restoration effects of treatment programs from the SM perspective. The results showed that: 1) SM values derived from TVDI inversion and the aSAVI were more accurate, and the model sensitivity decreased with soil depth; 2) the mean value of SM fluctuated across the four periods but decreased slightly over the entire time series. The spatial variations of the SM were characterized by a “descending then ascending” trend. Soil moisture increased in 21.35 % of areas at 0.00-0.10 m in the past 22 years, and 59.66 % at 0.10-0.20 m. There was a negative correlation between the mean variation trend of SM and the percentage of area where SM fell in different periods; 3) the treatment program positively affected the ecological restoration of the Minqin Basin from the SM perspective. The area where SM increased was larger than that of decreasing SM, especially in 0.10-0.20 m soil layer. The increase can promote growth and confer resistance to desertification.
DOI: 10.6084/m9.figshare.21836229
title: The tectono-magmatic formation of the Japan Sea: Constraints from in-situ trace elements and Sr isotopes of plagioclase and clinopyroxene

description:  Figure and Table Captions, Geochemical Data, and Supplementary Figures generated in this study are included in the Supplementary I, Tables S1-S5, and Figures S1-S4.
DOI: 10.6084/m9.figshare.9777608
title: Microwave heating and non-thermal effects of sodium chloride aqueous solution

description: The dielectric thermal and non-thermal properties of sodium chloride aqueous solution under the microwave region have been estimated. The dielectric properties, hydrogen bonding, transport properties, energy distribution and local structure have been evaluated by classical molecular dynamics method. In the process of microwave energy distribution, the direct coupling of rotational motion, vibration and redirection is revealed. Microwave energy is converted into kinetic energy and interaction energy between two molecules. A mechanism for exploring the effects of microwaves on the non-thermal effects of brine systems over a longer simulation time and a wider microwave range is proposed. The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions. More specifically, above the field threshold, the residence time of water molecules near the ions significantly decreases. <b>Highlights</b>Microwave energy is transferred to the kinetic energy and the energy between the molecules.The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions.The larger electric field strength amplifies the effect of frequency.The residence time of water molecules near the ions significantly decreases. Microwave energy is transferred to the kinetic energy and the energy between the molecules. The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions. The larger electric field strength amplifies the effect of frequency. The residence time of water molecules near the ions significantly decreases.
DOI: 10.6084/m9.figshare.9777608.v1
title: Microwave heating and non-thermal effects of sodium chloride aqueous solution

description: The dielectric thermal and non-thermal properties of sodium chloride aqueous solution under the microwave region have been estimated. The dielectric properties, hydrogen bonding, transport properties, energy distribution and local structure have been evaluated by classical molecular dynamics method. In the process of microwave energy distribution, the direct coupling of rotational motion, vibration and redirection is revealed. Microwave energy is converted into kinetic energy and interaction energy between two molecules. A mechanism for exploring the effects of microwaves on the non-thermal effects of brine systems over a longer simulation time and a wider microwave range is proposed. The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions. More specifically, above the field threshold, the residence time of water molecules near the ions significantly decreases. <b>Highlights</b>Microwave energy is transferred to the kinetic energy and the energy between the molecules.The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions.The larger electric field strength amplifies the effect of frequency.The residence time of water molecules near the ions significantly decreases. Microwave energy is transferred to the kinetic energy and the energy between the molecules. The increase in field intensity is usually accompanied by local damage to the water structure near the hydrated ions. The larger electric field strength amplifies the effect of frequency. The residence time of water molecules near the ions significantly decreases.
DOI: 10.6084/m9.figshare.16590741
title: Additional file 2 of Inferring SARS-CoV-2 functional genomics from viral transcriptome with identification of potential antiviral drugs and therapeutic targets

description: Additional file 2: Table S1. The differentially expressed human genes and SR genes in SARS-CoV-2-infected human cells. Table S2. TFs that significantly associated with viral genes. Table S3. The co-expression relationships between ncRNAs and SR genes in COVID-19. Table S4. Potential host-targeted antiviral drugs associated with SR genes.
DOI: 10.5281/zenodo.10678848
title: WOUND HEALING COMPLICATION IN RADIOTREATED LIMB SOFT TISSUE SARCOMA PATIENTS

description: Radiotherapy is recommended for G2-G3 large Soft Tissue Sarcoma (STS) in association with radical wide excision in order to improve the local control of disease, but side-effects may develop early after radiation invalidating wound healing. The aim of this study was to evaluate retrospectively short- and long-term clinically relevant outcomes after surgery of limb STS with or without radiotherapy. A total of 243 patients with limb STS treated at the Veneto Institute Oncology (Padua, Italy) in 2015-2022 were included. Outcome measures were short- and long-term wound complications, length of hospital stay and outpatient care time. Multivariable analyses were performed using linear regression models and logistic regression models. 87 patients received neoadjuvant radiotherapy, 64 received adjuvant radiotherapy, and 92 underwent surgery alone. At short-term, multivariable analysis identified neoadjuvant radiotherapy as a risk factor for prolonged length of hospital stay (MD 6.4 days, 95%CI 3.9 to 9.0 days) and short-term wound complications (OR 3.45, 95%CI 1.82 to 6.62). At long-term, neoadjuvant radiotherapy was a risk factor for long-term wound complications (OR 4.87, 95%CI 2.48 to 9.84), and longer outpatient care time (MD 83 days, 95%CI 41 to 126 days); similarly, adjuvant radiotherapy was also a risk factor for long-term complications (OR 5.20, 95%CI 2.57 to 10.95) and longer outpatient care time (MD 62 days, 95%CI 19 to 106 days). Radiotherapy in limb STS was associated with impaired short- and long-term clinically relevant outcomes, potentially affecting quality of life and healthcare costs. Balancing with its well-known oncological benefits, new clinical strategies are needed to contain cutaneous radiogenic side effects.
DOI: 10.5281/zenodo.10678849
title: WOUND HEALING COMPLICATION IN RADIOTREATED LIMB SOFT TISSUE SARCOMA PATIENTS

description: Radiotherapy is recommended for G2-G3 large Soft Tissue Sarcoma (STS) in association with radical wide excision in order to improve the local control of disease, but side-effects may develop early after radiation invalidating wound healing. The aim of this study was to evaluate retrospectively short- and long-term clinically relevant outcomes after surgery of limb STS with or without radiotherapy. A total of 243 patients with limb STS treated at the Veneto Institute Oncology (Padua, Italy) in 2015-2022 were included. Outcome measures were short- and long-term wound complications, length of hospital stay and outpatient care time. Multivariable analyses were performed using linear regression models and logistic regression models. 87 patients received neoadjuvant radiotherapy, 64 received adjuvant radiotherapy, and 92 underwent surgery alone. At short-term, multivariable analysis identified neoadjuvant radiotherapy as a risk factor for prolonged length of hospital stay (MD 6.4 days, 95%CI 3.9 to 9.0 days) and short-term wound complications (OR 3.45, 95%CI 1.82 to 6.62). At long-term, neoadjuvant radiotherapy was a risk factor for long-term wound complications (OR 4.87, 95%CI 2.48 to 9.84), and longer outpatient care time (MD 83 days, 95%CI 41 to 126 days); similarly, adjuvant radiotherapy was also a risk factor for long-term complications (OR 5.20, 95%CI 2.57 to 10.95) and longer outpatient care time (MD 62 days, 95%CI 19 to 106 days). Radiotherapy in limb STS was associated with impaired short- and long-term clinically relevant outcomes, potentially affecting quality of life and healthcare costs. Balancing with its well-known oncological benefits, new clinical strategies are needed to contain cutaneous radiogenic side effects.
DOI: 10.6084/m9.figshare.12922615.v1
title: Additional file 3 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 3: Table S2. Synteny blocks of HM genes within grape genome.
DOI: 10.6084/m9.figshare.21835372
title: Impact of Coronary Artery Disease on The Outcomes of Catheter Ablation in Patients with Atrial Fibrillation

description: ABSTRACT Introduction: The objective of this study is to investigate the possible impact of coronary artery disease (CAD) on clinical outcomes of catheter ablation in patients with atrial fibrillation (AF). Methods: Patients with AF who underwent coronary computed tomography and catheter ablation were enrolled. The presence of stenotic severity and plaque, characteristics of coronary arteries, clinical data, and adverse outcomes of catheter ablation were analysed. Results: A total of 243 patients were enrolled, 100 (41%) patients with CAD. The CHA2DS2-VASc (congestive heart failure, hypertension, age ≥ 75 years, diabetes mellitus, stroke or transient ischemic attack, vascular disease, age 65-74 years, and sex category) score of AF patients with CAD was significantly (P&lt;0.001) higher than of those without CAD. Presence of stenotic artery and plaques increased significantly with increase of CHA2DS2-VASc score (P&lt;0.05). There was no significant (P=0.342) difference in AF recurrence between patients with and without CAD (30% versus 24%). Age, AF type, duration of AF, heart failure, CHA2DS2-VASc score, left ventricular ejection fraction, and left atrial diameter were significantly (P&lt;0.05) correlated with AF recurrence in univariant analysis. Multivariable analysis revealed that duration of AF (hazard ratio [HR] 1.769), heart failure (HR 1.821), and left atrial diameter (HR 1.487, P=0.022) remained significant independent predictors of AF recurrence. Patients with AF and concomitant CAD were significantly (P=0.030) associated with a worse outcome. Conclusion: CAD concomitant with AF may be associated with a worse clinical outcome even though CAD does not significantly affect the risk of AF recurrence after ablation therapy.
DOI: 10.6084/m9.figshare.12922618
title: Additional file 4 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 4: Table S3. Synteny blocks of HM genes between grape and Arabidopsis genome.
DOI: 10.6084/m9.figshare.12922621
title: Additional file 5 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 5: Table S4. Detailed information of DEGs identified in transcriptome analysis.
DOI: 10.6084/m9.figshare.16590834
title: Additional file 1 of A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens

description: Additional file 1: Table S1. List of all significant SNPs sorted by significance1. SNP = name of the single nucleotide polymorphism; GGA = Gallus gallus chromosome; location (bp) = position of the SNP on the chromosome in base pairs on the Galgal4 assembly; MAF = minor allele frequency; EFF = allele substitution effect; SE = standard error of the effect; P-value = P-values from the single SNP regression while simultaneously correcting for the background polygenic effect; P-valueFDR = false discovery rate P-value; LOG = the −log10 of the P-value; VSNP = variance due to the SNP (calculated as 2pqb2, where p is the frequency of major allele, q = 1 − p is the frequency of the minor allele and b is the allele substitution effect); VA = additive genetic variance; VP = phenotypic variance; VAsnp (%) = percentage of additive genetic variance explained by each SNP; VPsnp (%) = percentage of phenotypic variance explained by each SNP. 1Of the 96 significant SNPs 18 are proprietary to Aviagen and therefore their base pair location has been excluded.
DOI: 10.6084/m9.figshare.12922618.v1
title: Additional file 4 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 4: Table S3. Synteny blocks of HM genes between grape and Arabidopsis genome.
DOI: 10.6084/m9.figshare.21835419.v1
title: Inversion of soil moisture and its feedback on ecological restoration in arid and semi-arid areas of northwest China

description: ABSTRACT Soil moisture (SM) plays an important role in regulating the global water cycle, especially in arid areas, and is one of the main indicators of ecological environmental health. Although traditional methods can accurately measure SM at a single sample site, they are limited in large-scale and dynamic SM monitoring. Therefore, we used the Landsat images as the data source and the soil adjusted vegetation index (SAVI) to build the adjusted SAVI (aSAVI) index by modifying the soil adjustment parameter L and introducing the short-wave infrared band. According to the theory of temperature vegetation dryness index (TVDI) and feature space, we introduced a model, combined the measured SM data (Minqin Basin, China) through a comparative analysis of four vegetation indices (NDVI, SAVI, MSAVI, aSAVI) determine the optimal model. Taking the Minqin Basin as the study area, the spatiotemporal variation characteristics of SM in three sub-regions (the entire study area, irrigated region, and periphery of the irrigated regions) were quantitatively analyzed and compared in four different periods: pre-Comprehensive Treatment Program of the Shiyang River Basin (pre-CTSRB) (2000–2005), CTSRB I (2006–2010), CTSRB II (2011–2016), and CTSRB-end (2017–2021) to evaluate the ecological restoration effects of treatment programs from the SM perspective. The results showed that: 1) SM values derived from TVDI inversion and the aSAVI were more accurate, and the model sensitivity decreased with soil depth; 2) the mean value of SM fluctuated across the four periods but decreased slightly over the entire time series. The spatial variations of the SM were characterized by a “descending then ascending” trend. Soil moisture increased in 21.35 % of areas at 0.00-0.10 m in the past 22 years, and 59.66 % at 0.10-0.20 m. There was a negative correlation between the mean variation trend of SM and the percentage of area where SM fell in different periods; 3) the treatment program positively affected the ecological restoration of the Minqin Basin from the SM perspective. The area where SM increased was larger than that of decreasing SM, especially in 0.10-0.20 m soil layer. The increase can promote growth and confer resistance to desertification.
DOI: 10.6084/m9.figshare.21310989
title: Additional file 1 of Comparison of different correction formulas and measurement methods for the accurate determination of intraocular pressure after SMILE and FS-LASIK surgery

description: Additional file 1.
DOI: 10.6084/m9.figshare.21835564
title: Effects of Remote Ischemic Preconditioning on Decreasing Troponin Release in Patients Not Taking Sulfonylureas After Cardiac Surgery – A Meta-Analysis

description: ABSTRACT Introduction: Remote ischemic preconditioning (RIPC) is a new noninvasive myocardial protection strategy that uses blood pressure cuf inflation to simulate transient non-fatal ischemia to protect the myocardium and reduce ischemia-reperfusion injury. Sulfonylureas may mask the effects of RIPC due to their cardioprotec-tive effect. This meta-analysis aimed to evaluate whether RIPC, in the absence of sulfonylureas, reduces troponin release in patients undergoing cardiac surgery. Methods: We conducted a meta-analysis of randomized controlled clinical trials to determine whether RIPC can reduce postoperative troponin release in cardiac surgery patients undergoing cardiopulmonary bypass without treatment with sulfonylureas. The data were normalized to equivalent units prior to the analysis. A random-effects model was used to provide more conservative estimate of the effects in the presence of known or unknown heterogeneity. Results: Six studies with a total of 570 participants were included. The analysis showed that troponin release was lower in the RIPC group than in the control group at six hours (test of standardized mean differences = 0, Z=3.64, P&lt;0.001) and 48 hours (Z=2.72, P=0.007) postoperatively. When the mean of cross-clamping time was &gt; 60 minutes, RIPC reduced troponin release at six hours (Z=2.84, P=0.005), 24 hours (Z=2.64, P=0.008), and 48 hours (Z=2.87, P=0.004) postoperatively. Conclusion: In cardiac surgery patients who are not taking sulfonylureas, RIPC can reduce troponin release at six and 48 hours postoperatively; hence, RIPC may serve significant benefits in certain cardiac surgery patients.
DOI: 10.6084/m9.figshare.19738143.v1
title: Heterogeneous nuclear ribonucleoprotein U-actin complex derived from extracellular vesicles facilitates proliferation and migration of human coronary artery endothelial cells by promoting RNA polymerase II transcription

description: Coronary artery disease (CAD) represents a fatal public threat. The involvement of extracellular vesicles (EVs) in CAD has been documented. This study explored the regulation of embryonic stem cells (ESCs)-derived EVs-hnRNPU-actin complex in human coronary artery endothelial cell (HCAEC) growth. Firstly, <i>in vitro</i> HCAEC hypoxia models were established. EVs were extracted from ESCs by ultracentrifugation. HCAECs were treated with EVs and si-VEGF for 24 h under hypoxia, followed by assessment of cell proliferation, apoptosis, migration, and tube formation. Uptake of EVs by HCAECs was testified. Additionally, hnRNPU, VEGF, and RNA Pol II levels were determined using Western blotting and CHIP assays. Interaction between hnRNPU and actin was evaluated by Co-immunoprecipitation assay. HCAEC viability and proliferation were lowered, apoptosis was enhanced, wound fusion was decreased, and the number of tubular capillary structures was reduced under hypoxia, whereas ESC-EVs treatment counteracted these effects. Moreover, EVs transferred hnRNPU into HCAECs. EVs-hnRNPU-actin complex increased RNA Pol II level on the VEGF gene promoter and promoted VEGF expression in HCAECs. Inhibition of hnRNPU or VEGF both annulled the promotion of EVs on HCAEC growth. Collectively, ESC-EVs-hnRNPU-actin increased RNA Pol II phosphorylation and VEGF expression, thus promoting HCAEC growth.
DOI: 10.6084/m9.figshare.21311021
title: Additional file 5 of STAT3/miR-130b-3p/MBNL1 feedback loop regulated by mTORC1 signaling promotes angiogenesis and tumor growth

description: Additional file 5: Supplementary Table 9. List of the downregulated differentially expressed genes from DEGs in angiofibroma(AF) of TSC patients vs. normal skin. All genes were identified with FDR-adjusted p-value &lt; 0.05 and absolute value of log2(FC) &gt; 1.
DOI: 10.6084/m9.figshare.12922621.v1
title: Additional file 5 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 5: Table S4. Detailed information of DEGs identified in transcriptome analysis.
DOI: 10.6084/m9.figshare.22333150.v3
title: scCPEP

description: scCPEP
DOI: 10.6084/m9.figshare.12923582
title: FGF21/adiponectin ratio predicts new-onset diabetes: A 4.6-year prospective study in China (Supplementary material)

description: Supplementary material
DOI: 10.6084/m9.figshare.9253790
title: Additional file 10: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: KEGG enrichment results. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9253790.v1
title: Additional file 10: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: KEGG enrichment results. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9253805
title: Additional file 2: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Primers used for qRT-PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9253805.v1
title: Additional file 2: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Primers used for qRT-PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9253808
title: Additional file 3: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Data output quality list. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9253808.v1
title: Additional file 3: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Data output quality list. (XLSX 18 kb)