cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13370060
title: Supplementary materials of Garcinia paucinervis

description: This data is the supplementary material of the article "The complete chloroplast genome provides insight into the polymorphism and adaptive evolution of <i>Garcinia paucinervis</i><b>"<br></b><br>
DOI: 10.6084/m9.figshare.13370060.v1
title: Supplementary materials of Garcinia paucinervis

description: This data is the supplementary material of the article "The complete chloroplast genome provides insight into the polymorphism and adaptive evolution of <i>Garcinia paucinervis</i><b>"<br></b><br>
DOI: 10.15468/v8q7my
title: Two new species of Sinacroneuria Yang & Yang, 1995 (Plecoptera: Perlidae) from Guizhou, southwestern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Qing-Bo, Huo, Yu-Zhou, Du (2020): Two new species of Sinacroneuria Yang & Yang, 1995 (Plecoptera: Perlidae) from Guizhou, southwestern China. Zootaxa 4834 (2): 283-292, DOI: https://doi.org/10.11646/zootaxa.4834.2.8
DOI: 10.5517/ccdc.csd.cc22g66z
title: CCDC 1920270: Experimental Crystal Structure Determination

description: Related Article: Li Heng, Mengling Zhao, Rong Xu, Rong Tao, Chengcheng Wang, Lina Zhang, Yunge Bu, Jun Luo, Yi Li|2021|Phytochemistry|182|112606|doi:10.1016/j.phytochem.2020.112606
DOI: 10.5517/ccdc.csd.cc24q164
title: CCDC 1987385: Experimental Crystal Structure Determination

description: Related Article: Weiwei Li, Mariette de Groen, Herman J. M. Kramer, René de Gelder, Paul Tinnemans, Hugo Meekes, Joop H. ter Horst|2020|Cryst.Growth Des.|21|112|doi:10.1021/acs.cgd.0c00890
DOI: 10.5517/ccdc.csd.cc24q175
title: CCDC 1987386: Experimental Crystal Structure Determination

description: Related Article: Weiwei Li, Mariette de Groen, Herman J. M. Kramer, René de Gelder, Paul Tinnemans, Hugo Meekes, Joop H. ter Horst|2020|Cryst.Growth Des.|21|112|doi:10.1021/acs.cgd.0c00890
DOI: 10.5517/ccdc.csd.cc256wfq
title: CCDC 2002613: Experimental Crystal Structure Determination

description: Related Article: Mei Zhao, Yu-Shuang Guo, Guo-Dong Fu, An-Qi Xue, Qing-Hao Shao, Qiong Wang, Dian-Shun Guo|2021|Spectrochim.Acta,Part A|248|119252|doi:10.1016/j.saa.2020.119252
DOI: 10.5517/ccdc.csd.cc25qwtm
title: CCDC 2018001: Experimental Crystal Structure Determination

description: Related Article: Iker Del Rosal, Sébastien Lassalle, Chiara Dinoi, Chloé Thieuleux, Laurent Maron, Clément Camp|2020|Dalton Trans.|50|504|doi:10.1039/D0DT03818K
DOI: 10.5281/zenodo.4449926
title: SARS-CoV-2 NSP13; A Target Enabling Package

description: To contribute towards the development of novel anti-viral therapeutics targeting the current and future emerging coronavirus threats, the Gileadi lab at the University of Oxford, together with the XChem team at Diamond Light Source, have teamed up to perform a crystallographic fragment screen against SARS-CoV-2 NSP13 helicase. NSP13 is believed to act in concert with the replication-transcription complex (NSP7/NSP8<sub>2</sub>/NSP12), possibly being involved in either disrupting downstream RNA secondary structures or template switching, and plays an essential role in the life cycle of SARS-CoV-2. This TEP includes expression clones and methods for producing the full length NSP13, and fluorescence-based activity assays suitable for compound screening. We provide a crystallisation system that produces reproducible crystals that diffract to high resolution, and have performed a crystallographic fragment screen revealing 63 fragment hits across 51 datasets. The fragment hits include several hits in pockets predicted to be of functional importance, including the nucleotide and nucleic acid binding sites, opening the way to development of novel antiviral agents.
description: Future version of this TEP will contain experimental data from the NSP-13 TEP.
DOI: 10.5517/ccdc.csd.cc25y5cp
title: CCDC 2024032: Experimental Crystal Structure Determination

description: Related Article: Takashi Kurogi, Daniel J. Mindiola|2020|Organometallics|39|4474|doi:10.1021/acs.organomet.0c00575
DOI: 10.5517/ccdc.csd.cc25y5dq
title: CCDC 2024033: Experimental Crystal Structure Determination

description: Related Article: Takashi Kurogi, Daniel J. Mindiola|2020|Organometallics|39|4474|doi:10.1021/acs.organomet.0c00575
DOI: 10.5517/ccdc.csd.cc25yh3r
title: CCDC 2024334: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc25yh6v
title: CCDC 2024337: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc25yjwk
title: CCDC 2024389: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc25yk3t
title: CCDC 2024396: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc25ykj7
title: CCDC 2024409: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc25yk8z
title: CCDC 2024401: Experimental Crystal Structure Determination

description: Related Article: Nikolay Viktorovich Somov, Feodor Feodorovich Chausov, Irina Sergeevna Kazantseva, Alyona Nikolaevna Maratkanova, Maria Nikolaevna Nikitina|2020|Polyhedron|195|114964|doi:10.1016/j.poly.2020.114964
DOI: 10.5517/ccdc.csd.cc265g73
title: CCDC 2031034: Experimental Crystal Structure Determination

description: Related Article: Chao Yu, Jiefeng Liang, Chong Deng, Guillaume Lefèvre, Thibault Cantat, Paula L. Diaconescu, Wenliang Huang|2020|J.Am.Chem.Soc.|142|21292|doi:10.1021/jacs.0c11215
DOI: 10.5517/ccdc.csd.cc265g84
title: CCDC 2031035: Experimental Crystal Structure Determination

description: Related Article: Chao Yu, Jiefeng Liang, Chong Deng, Guillaume Lefèvre, Thibault Cantat, Paula L. Diaconescu, Wenliang Huang|2020|J.Am.Chem.Soc.|142|21292|doi:10.1021/jacs.0c11215
DOI: 10.7479/e1hc-ff78
title: Tri- and tetranucleotide microsatellite markers developed based on the genome of the common vampire bat (Desmodus rotundus)

description: This data resource contains information on tri- and tetranucleotide microsatellite markers that have been developed based on the whole genome of the common vampire bat, Desmodus rotundus. 1. Software for screening genome resource We downloaded v.2 of the common vampire bat (Desmodus rotundus) reference genome from NCBI (https://www.ncbi.nlm.nih.gov/assembly/GCF_002940915.1/#/st) to identify a new set of candidate microsatellite loci. We used Msatcommander v.1.0.8-beta (Faircloth 2008) with default parameters and the search parameter settings for tri- and tetranucleotide sites set to 10. The build-in function for primer design (Primer3; Rozen Skaletsky 2000) was then used with mostly default settings and GC-content for primers to vary between 40 and 60%. Overall, this yielded 6080 potential loci (see sheet "All candidate loci" in the Excel file "Markers") and 4309 candidate loci with associated primers (sheet "Candidate loci with primers" in the file "Markers"). We then selected candidates that had a product size of ca. 120-300 bp and 10-15 repeated motifs. Twenty such candidates have been further evaluated in the lab and 18 have successfully been genotyped. Faircloth, B. C. (2008). MSATCOMMANDER: Detection of microsatellite repeat arrays and automated, locus‐specific primer design. Molecular ecology resources, 8(1), 92-94. Rozen, S., Skaletsky, H. (2000). Primer3 on the WWW for general users and for biologist programmers. In Bioinformatics methods and protocols (pp. 365-386). Humana Press, Totowa, NJ. 2. Lab work We conducted uniplex PCRs using a three-primer system (Schuelke 2000) with an M13-tailed forward primer and a fluorescent-labeled M13 primer to amplify the target fragments. Primer sequences and information on fragment length and the sequence of the repeating motif can be found in the sheet "overview markers" in the Excel file "Markers". Details on preparation and cycling conditions are described in the sheet "PCR" in the Excel file "Markers". Fragments were analyzed on a SeqStudio™ Genetic Analyzer and genotyping was done in the software GeneMapper 6. All details are described in the sheet "Seq Studio" in the Excel file "Markers". Schuelke, M. (2000). An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology, 18(2), 233-234. 3. Allele frequencies and deviance from Hardy-Weinberg Equilibrium We calculated allele frequencies for 18 markers based on 42 adult female vampire bats. We used the R library 'genetics' to test for deviance from Hardy Weinberg Equilibrium. Results are summarized in the sheet "overview markers" in the Excel file "Markers".
DOI: 10.6084/m9.figshare.13516472.v1
title: AralBasindata.zip

description: Water use and socio-economic data in the Aral Sea basin<br>
DOI: 10.17632/cf2wvytr5r.1
title: Dairy farmer perceptions of antibiotic transport and use interview dataset

description: Qualitative interview data from 27 dairy farms in central New York. Content includes perceptions of antibiotic use and transport on dairy farms across management practices, farmer age, and number of milking cows.
DOI: 10.17632/fxmb9pxx72.1
title: Simulations of water temperature changes in District Heating Network

description: A program for calculating (simulating) the average value of water temperature in a district heating network, based on a simplified model of the district heating system. The program uses a database containing measurement results of supply and return water temperatures in heat sources.
DOI: 10.17632/bz46sgxm8g.2
title: [100] disorientation axis grain boundary energies and structures

description: This dataset includes a variety of 100 disorientation axis grain boundaries created as part of two different publications. In work published by J.L. Priedeman, C.W. Rosenbrock, O.K. Johnson, and E.R. Homer (Quantifying and connecting atomic and crystallographic grain boundary structure using local environment representation and dimensionality reduction techniques, Acta Materialia. 161 (2018) 431–443. doi:10.1016/j.actamat.2018.09.011), a number of [100] symmetric tilt grain boundaries were created and analyzed. This online dataset contains a CSV file with information about the crystallographic character of these grain boundaries, as well as their energy. A ZIP file contains the atomistic structures for these grain boundaries. In work published by H.C. Erickson and E.R. Homer (Insights into grain boundary energy structure-property relationships by examining computed [1 0 0] disorientation axis grain boundaries in Nickel, Scripta Materialia. (2020) doi:10.1016/j.scriptamat.2020.03.062), [100] disorientation axis grain boundaries are examined to provide insight into grain boundary energy structure-property relationships over 6 coincidence site lattice misorientations at regularly spaced disorientation angles, and over the full range of boundary plane orientations. The data is used to analyze and compare energies with a dataset of Nickel grain boundaries created by D.L. Olmsted, S.M. Foiles, E.A. Holm (Survey of computed grain boundary properties in face-centered cubic metals: I. Grain boundary energy, Acta Materialia. 57 (2009) 3694–3703. doi:10.1016/j.actamat.2009.04.007) and a face-centered cubic grain boundary energy function developed by V.V. Bulatov, B.W. Reed, M. Kumar (Grain boundary energy function for fcc metals, Acta Materialia. 65 (2014) 161–175. doi:10.1016/j.actamat.2013.10.057). This online dataset contains a CSV file with information about the crystallographic character of these grain boundaries, as well as their energy; the Bulatov predicted energy and Olmsted energies are reported in the supplemental material where relevant. A ZIP file contains the atomistic structures for most of these grain boundaries. V2 of this dataset corrects a minor error in column header names in the "Dataset- Erickson-Homer - v2.csv" file.
DOI: 10.17632/7rcpk2trr7.1
title: A low-cost photogrammetric-based 3D hand scanner
DOI: 10.17632/bpck4nwdv9.1
title: Protein dataset of immortalized keratinocyte HaCaT cells and normal human keratinocytes

description: Learning of the molecular mechanisms of the pathological processes development in the normal human keratinocytes (NHK) are difficult. These cells are aging in culture - their phenotype, and as a consequence, the protein composition, undergoes changes with an increase in the number of passages, and the duration of cultivation itself is limited. Another known disadvantage of using primary cell lines as an object of analysis is the significant variability in the structural and functional characteristics of cells obtained from different donors. Immortalized keratinocytes HaCaT are often used as an analogue of NHK since they have a number of advantages over the latter - they do not require the presence of growth and differentiation factors in the medium, have unlimited potential for proliferation, demonstrate stable phenotype regardless of the number of passages (Colombo et al., 2017). Certainly, due to the fact that HaCaT is an immortalized cell line, some of their properties distinguish them from NHK (Boukamp et al., 1988). However, HaCaT keratinocytes have key properties similar to NHK. For example, HaCaT cells exhibit a similar response to differentiation stimuli - increased Ca2 + concentration (Deyrieux et al., 1988) and high confluence (Capone et al., 2000) cause HaCaT to produce keratinocyte differentiation factors such as the cytokeratins K14, K10; Involucrin (Colombo et al., 2017). These cells can form the stratum corneum of the epidermis under the influence of transforming growth factor-α and interleukin-1 (Szabowski et al., 2003). Taking into account the properties and characteristics of the HaCaT line, these cells can be considered as a promising experimental model for research various physiological processes occurring in human keratinocytes. However, to understand the limitations of such an experimental model, a detailed comparative characterisation of HaCaT and NHK is required, which can be obtained by carrying out its proteomic analysis.
DOI: 10.17632/53kf4k8266.1
title: Blue light photodynamic therapy with 5-aminolevulinic acid in refractory mycosis fungoides: A prospective, open-label study

description: Supplementary Materials for "Blue light photodynamic therapy with 5-aminolevulinic acid in refractory mycosis fungoides: A prospective, open-label study"
DOI: 10.17632/3x58h2wgdy.1
title: Production profiles (oil, gas condensate, dry gas, wet gas)

description: This dataset is used in research.
DOI: 10.17632/x8w37jbyhr.1
title: LINF_060019100

description: Cytochrome b5-like Heme/Steroid binding domain containing protein; Leishmania infantum
DOI: 10.17632/n97mb976b2.1
title: LINF_060019000

description: protoporphyrinogen oxidase | PPOX; Leishmania infantum
DOI: 10.6084/m9.figshare.13516472.v2
title: AralBasindata.zip

description: Water use and socio-economic data in the Aral Sea basin<br>
DOI: 10.17632/m8b9hvwv7f.1
title: LINF_060018900

description: coproporphyrinogen III oxidase; Leishmania infantum
DOI: 10.17632/3fgjk8k7rp.1
title: LINF_060018800

description: pteridine transporter; Leishmania infantum
DOI: 10.17632/pz6ffxpxys.1
title: LINF_060018300

description: Protein of unknown function (DUF1637); Leishmania infantum
DOI: 10.17632/s3nyn2swrc.1
title: LINF_070005500

description: alpha-adaptin-like protein; Leishmania infantum
DOI: 10.17632/gnj5s8hk4v.1
title: LINF_070005200

description: histone-lysine N-methyltransferase | DOT1A; Leishmania infantum
DOI: 10.17632/mgh726jbtj.1
title: LINF_070005100

description: Isy1-like splicing family; Leishmania infantum
DOI: 10.17632/sfrsxkyc9j.2
title: RNA Polymerase III Is Required for the Repair of DNA Double-Strand Breaks by Homologous Recombination

description: Sequencing raw data for analyzing the up and down stream 240bp DNA sequences around the DSB site .
DOI: 10.17632/9v27h8fm63.1
title: ChengYu Urban Agglomeration Dataset IJGIS

description: This dataset contains a shapefile and an excel document. The shapefile data includes the spatial data of ChengYu Urban Agglomeration and its attributes such as population, GDP, transportation, education, and public health. The excel document contains the traffic cost between cities for different modes of travel, such as expressway, high-speed railway, and general speed railway.
DOI: 10.17632/nw7yr4zycr.1
title: Distribution and Antibiotic Resistance Profiles of Salmonella enterica in Rural Areas of North Carolina After Hurricane Florence in 2018

description: In this study, water samples were analyzed from a rural area of North Carolina after Hurricane Florence in 2018 and the distribution of the ttrC virulence gene of Salmonella enterica were investigated. We also examined the distribution of culturable S. enterica and determined their antibiotic resistance profiles. Antibiotic resistance genes (ARGs) in the classes of aminoglycoside, beta‐lactam, and macrolide‐lincosamide‐streptogramin B (MLSB) were targeted in this study. The ttrC gene was detected in 23 out of 25 locations. There was a wider and higher range of the ttrC gene in flooded water versus unflooded water samples (0–2.12 × 10^5 copies/L vs. 0–4.86 × 10^4 copies/L). Culturable S. enterica was isolated from 10 of 25 sampling locations, which was less prevalent than the distribution of the ttrC gene. The antibiotic resistance profiles were not distinct among the S. enterica isolates. The aminoglycoside resistance gene aac(6')‐Iy had the highest relative abundance (around 0.05 copies/16S rRNA gene copy in all isolates) among all ARGs. These findings suggested that the 2018 flooding event led to higher copy numbers of the ttrC genes of S. enterica in some flooded water bodies compared to those in unflooded water bodies. The high ARG level and similar ARG profiles were observed in all S. enterica isolates from both flooded and unflooded samples, suggesting that the antibiotic resistance was prevalent in S. enterica within this region, regardless of flooding. Figure S1. The elevations of the 25 sampling locations. Table S1. The Information of the 25 Sampling Locations. Table S2. The List of the Primers Targeted and Validated in This Study. [File Name: Supplementary Table 2] Table S3. The High-throughput qPCR Condition for ARGs Detection. [File Name: Supplementary Table 3] Table S4. The Positive ARGs in the 32 S. enterica Isolates. [File Name: Supplementary Table 4] Table S5. The Relative Abundances of the 30 Quantifiable ARGs in the 32 S. enterica Isolates. [File Name: Supplementary Table 5]
DOI: 10.17632/hnnmw6ygf3.1
title: Supplementary Material for Data in Brief article on Titan Tumbler

description: Supplementary Material for Data in Brief (DiB) article "Sieved mass and shape data from simulated fluvial transport of icy clasts in the Titan Tumbler". Dataset includes CSV files reporting clast mass and roundness at each timestep, JPG images of clasts at each timestep, CSV files of the tables in the DiB article, videos of the tumbler in action, and the MATLAB code used to compute roundness indices. Data were collected in two different barrels regulated at three different temperatures. Ice clasts had initial variation in number, size, shape, and ice type. See Maue et al., 2021 (DiB).
DOI: 10.17632/thfzt39658.1
title: Skill Bias Magnified: Identifying the Role of International Technology Diffusion

description: Data and code to replicate empirical findings in "Skill Bias Magnified: Identifying the Role of International Technology Diffusion"
DOI: 10.17632/4ctynsfk79.1
title: Endocrine Mucin Producing Sweat Gland Carcinoma

description: Table 2, Table 3 and Figure 2 from Next Generation Sequencing analysis suggests varied multistep mutational pathogenesis for Endocrine Mucin Producing Sweat Gland Carcinoma with comments on INSM1 and MUC2 suggesting a conjunctival origin Joseph G. Mathew, MD1, Anita S. Bowman, MS2, Jad Saab, MD2, Klaus J Busam, MD2, Kishwer Nehal, MD³, Melissa Pulitzer, MD2 1 Department of Pathology and Molecular Medicine, McMaster University, Hamilton, ON, Canada 2 Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA 3 Department of Medicine, Dermatology Division, Memorial Sloan Kettering Cancer Center, New York, NY, USA
DOI: 10.17632/myzsc4hvbm.1
title: Supplementary data on confocal imaging of Porphyromonas gingivalis release of polyphosphates and fibrin formation

description: The hypothesis was that Porphyromonas gingivalis by secreting gingipains or polyphosphates could initiate blood coagulation and thereby contribute to fibrin deposition in gingival tissue which in turn promotes chronic inflammation. Chronic inflammation in gingival tissue eventually leads to bone degradation and loss of tooth support, known as periodontitis. The results show that P. gingivalis initiate coagulation by means of gingipains as well as polyphosphates. Supplementary data on confocal imaging of P. gingivalis release of polyphosphates and fibrin formation; mages and microscopy movies.
DOI: 10.17632/gz4zpv5gj8.4
title: Personality as a key variable in individual CBT for ED: A systematic review database

description: In this systematic review, 16 studies were coded. This is the complete database of extracted data. It has been written in the native language of the authors (i.e., Italian), but the first author is available upon request for an English translation
DOI: 10.17632/cst2n8fpmy.1
title: Usefulness of high-frequency Doppler ultrasound skin thickness measurement for disease staging and assessing treatment response in patients with scleredema: a case-control study.

description: Supplemental Material A. Expanded Methods B. Figures Supl. Fig 1. Thickening of the dermis in one patient with scleredema (Cases 1): (A) Initial HFUS neck; (B) initial HFUS upper back; (C) initial HFUS arm; (D) HFUS neck follow-up; (E) HFUS upper back follow-up; (F) HFUS arm follow-up. Supl. Fig. 2. Hyperechogenic dermis with acoustic back shadow in a patient with scleredema (Case 3)