cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15219609
title: Supporting data: Connecting the Age and Reactivity of Riverine Organic Carbon to Watershed Geology and Land Use in Tributaries of the Hudson River (JRG: Biogeosciences, 10.1029/2021JG006494)

description: Supporting data for "Connecting the Age and Reactivity of Riverine Organic Carbon to Watershed Geology and Land Use in Tributaries of the Hudson River" (JRG: Biogeosciences, 10.1029/2021JG006494)<br>FTICR-MS data (FTICRMS_data.xlsx) DOC concentration data from incubation experiments (DOC_conc_incubations.xlsx) DOC Δ14C data from incubation experiments (Table_incubations_d14C.xlsx) UV-Vis absorbance data for river water samples (UV_Vis_data.xlsx) <br>
DOI: 10.6084/m9.figshare.15219609.v1
title: Supporting data: Connecting the Age and Reactivity of Riverine Organic Carbon to Watershed Geology and Land Use in Tributaries of the Hudson River (JRG: Biogeosciences, 10.1029/2021JG006494)

description: Supporting data for "Connecting the Age and Reactivity of Riverine Organic Carbon to Watershed Geology and Land Use in Tributaries of the Hudson River" (JRG: Biogeosciences, 10.1029/2021JG006494)<br>FTICR-MS data (FTICRMS_data.xlsx) DOC concentration data from incubation experiments (DOC_conc_incubations.xlsx) DOC Δ14C data from incubation experiments (Table_incubations_d14C.xlsx) UV-Vis absorbance data for river water samples (UV_Vis_data.xlsx) <br>
DOI: 10.5281/zenodo.5441668
title: Prospects for single photon sideband cooling of optically trapped neutral atoms

description: Data used for figures in paper: Berto et al., Prospects for single photon sideband cooling of optically trapped neutral atoms, 2021. Data is organized in single files fig1.csv, fig2.csv, ..., etc, each containing columns of &lt;x&gt; and &lt;y&gt; used to create the curves in the given figure. Abstract: We propose a novel cooling scheme for realising single photon sideband cooling on particles trapped in a state-dependent optical potential. We develop a master rate equation from an ab-initio model and find that in experimentally feasible conditions it is possible to drastically reduce the average occupation number of the vibrational levels by applying a frequency sweep on the cooling laser that sequentially cools all the motional states. Notably, this cooling scheme works also when a particle experiences a deeper trap in its internal ground state than in its excited state, a condition for which conventional single photon sideband cooling does not work. In our analysis, we consider two cases: a two-level particle confined in an optical tweezer and Li atoms confined in an optical lattice, and find conditions for efficient cooling in both cases. The results from the model are confirmed by a full quantum Monte Carlo simulation of the system Hamiltonian. Our findings provide an alternative cooling scheme that can be applied in principle to any particle, e.g. atoms, molecules or ions, confined in a state-dependent optical potential.
description: FARE-MIUR grant UltraCrystals (Grant No. R165JHRWR3)
DOI: 10.5281/zenodo.5441667
title: Prospects for single photon sideband cooling of optically trapped neutral atoms

description: Data used for figures in paper: Berto et al., Prospects for single photon sideband cooling of optically trapped neutral atoms, 2021. Data is organized in single files fig1.csv, fig2.csv, ..., etc, each containing columns of &lt;x&gt; and &lt;y&gt; used to create the curves in the given figure. Abstract: We propose a novel cooling scheme for realising single photon sideband cooling on particles trapped in a state-dependent optical potential. We develop a master rate equation from an ab-initio model and find that in experimentally feasible conditions it is possible to drastically reduce the average occupation number of the vibrational levels by applying a frequency sweep on the cooling laser that sequentially cools all the motional states. Notably, this cooling scheme works also when a particle experiences a deeper trap in its internal ground state than in its excited state, a condition for which conventional single photon sideband cooling does not work. In our analysis, we consider two cases: a two-level particle confined in an optical tweezer and Li atoms confined in an optical lattice, and find conditions for efficient cooling in both cases. The results from the model are confirmed by a full quantum Monte Carlo simulation of the system Hamiltonian. Our findings provide an alternative cooling scheme that can be applied in principle to any particle, e.g. atoms, molecules or ions, confined in a state-dependent optical potential.
description: FARE-MIUR grant UltraCrystals (Grant No. R165JHRWR3)
DOI: 10.6084/m9.figshare.16574822
title: Global Estimates of the Extent and Production of Macroalgal Forests [Supplementary information]

description: Global potential distribution of benthic and intertidal macroalgae (Rhodophyta and Phaeophyceae) inferred with mechanistic and correlative niche modelling. Data is provided as georeferenced high-resolution tif files.
DOI: 10.6084/m9.figshare.16574822.v1
title: Global Estimates of the Extent and Production of Macroalgal Forests [Supplementary information]

description: Global potential distribution of benthic and intertidal macroalgae (Rhodophyta and Phaeophyceae) inferred in high-resolution with mechanistic and correlative modelling. Data is provided as georeferenced tif files.
DOI: 10.5281/zenodo.5483453
title: The EGFRvIII Transcriptome in glioblastoma - public data repository

description: Compiled dataset from a large omics EGFRvIII study.
DOI: 10.5281/zenodo.4792444
title: The EGFRvIII Transcriptome in glioblastoma - public data repository

description: Compiled dataset from a large omics EGFRvIII study.
DOI: 10.5517/ccdc.csd.cc27xbk2
title: CCDC 2082814: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27xbl3
title: CCDC 2082815: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27xbm4
title: CCDC 2082816: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27xbn5
title: CCDC 2082817: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27xbp6
title: CCDC 2082818: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27xbq7
title: CCDC 2082819: Experimental Crystal Structure Determination

description: Related Article: Keshab M. Bairagi, Kapil S. Ingle, Rohit Bhowal, Smital A. Mohurle, Avantika Hasija, Osama I. Alwassil, Katharigatta N. Venugopala, Deepak Chopra, Susanta K. Nayak|2021|ChemPlusChem|86|1167|doi:10.1002/cplu.202100259
DOI: 10.5517/ccdc.csd.cc27yk5y
title: CCDC 2083980: Experimental Crystal Structure Determination

description: Related Article: SUSHANTA KUMAR PARIDA|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27yqyw
title: CCDC 2084159: Experimental Crystal Structure Determination

description: Related Article: Ahmed K. B. Aljohani, Jonathan D. Sellars, Paul G. Waddell|2021|CSD Communication|||
DOI: 10.5281/zenodo.5354982
title: Synthetic data set to evaluate and benchmark the performance of multiple linear regression algorithms in Scikit-Learn and SANElib

description: The datasets respresent different numbers of columns and rows to measure the scalability of linear regression algorihms in terms of columns and rows.
DOI: 10.6073/pasta/f5a353f8a96a360671bfc07b0c5553b0
title: PIE LTER, Year 2020, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts

description: Year 2020, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA. There were sifgnificant datalogger power, radio telecommunication and sonde cabling corrosion issues during the Covid-19 Spring - Fall of 2020. There are many missing data time periods due to issues and some limited field work capabilities due to Covid working restrictions.
DOI: 10.5281/zenodo.4899290
title: BSDF MicroLouvre Koolshade

description: Die xml-Datein der beiden BSDF der Musterproben des Sonnenschutzsystems MicroLouvre Koolshade, in der bronzefarbenen Ausführung. BISOL123_Solar_Klems_1Layer ist der 1fache Shading Layer BISOL123_Solar_Klems_1Layer ist der 2fache Shading Layer
DOI: 10.5281/zenodo.4899289
title: BSDF MicroLouvre Koolshade

description: Die xml-Datein der beiden BSDF der Musterproben des Sonnenschutzsystems MicroLouvre Koolshade, in der bronzefarbenen Ausführung. BISOL123_Solar_Klems_1Layer ist der 1fache Shading Layer BISOL123_Solar_Klems_1Layer ist der 2fache Shading Layer
DOI: 10.6084/m9.figshare.16578599
title: culture and future orientation

description: dataset of culture and future orientation
DOI: 10.6084/m9.figshare.14618505
title: FTFLM Survey Questionnaire

description: FTFLM survey questionnaire.
DOI: 10.6084/m9.figshare.14618505.v2
title: FTFLM Survey Questionnaire

description: FTFLM survey questionnaire.
DOI: 10.6084/m9.figshare.14618505.v1
title: FTFLM Survey Questionnaire

description: FTFLM survey questionnaire.
DOI: 10.5519/qd.avftjptr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (77 records)
DOI: 10.5281/zenodo.5483589
title: Example variant files and corresponding annotations for GnomAD v3.1.1 on a subset of chromosome 22

description: Example variant files and corresponding hg38 annotations for `chr22:15518158-20127355`. Sources: Gencode v34 (hg38) GnomAD v3.1.1
DOI: 10.5281/zenodo.5483588
title: Example variant files and corresponding annotations for GnomAD v3.1.1 on a subset of chromosome 22

description: Example variant files and corresponding hg38 annotations for `chr22:15518158-20127355`. Sources: Gencode v34 (hg38) GnomAD v3.1.1
DOI: 10.6084/m9.figshare.16577462
title: Data set for the Three-Factor Eating Questionnaire validation

description: This dataset was collected due to the Three-factor eating questionnaire (TFEQ) validation in the Russian sample and composed of three groups. All data were collected from university students in Stavropol Krai, Russia, and primarily studied at the North-Caucasus federal university. Respondents were surveyed in 2019-2020 years. The data includes results from 3 samples: (1) The main (experimental group) of 213 respondents. They were surveyed by: a. The unified version of TFEQ (51 items, TFEQ-51-Ru-mod). This version was radically shortened through structural equation modeling (SEM) to the validated model of 15 items (TFEQ-Ru15) with quite better psychometric characteristics b. Morosanova’s Self-Regulation Profile Questionnaire (SRQM, in Russian) was used for assessing cognitive-operational competencies and regulatory-personal features: goals planning, modeling of significant conditions, programming of actions, estimation of results, regulatory flexibility, and independence. All features were considered as possible predictors of eating behavior. c. The Russian shortened version of the Perceived Stress Scale (Cohen et al., 1983; Cohen & Williamson, 1988). Data from first and second control groups were collected only for obtaining psychometric characteristics of the most common TFEQ versions. (2) Control group of 669 respondents provided data for 18-items TFEQ version, TFEQ-18-2004 (de Lauzon, B., Romon, M., Deschamps, V., Lafay, L., Borys, J.-M., Karlsson, J., Ducimetière, P., Charles, M. A., & Fleurbaix Laventie Ville Sante (FLVS) Study Group. (2004). The Three-factor eating questionnaire-R18 is able to distinguish among different eating patterns in a general population. The Journal of Nutrition, 134(9), 2372–2380. https://doi.org/10.1093/jn/134.9.2372) translated in Russian by native speakers. (3) Control group of 301 respondents provided data for the original 51-items TFEQ, invented by Stunkard & Messick (1985), translated into Russian by native speakers. So, the file dataset.xlsx contains sheets: - Respondents’ answers in numbers for every item of TFEQ-51-Ru-mod (for SEM, 213 respondents) - Scales values of TFEQ-Ru15, SRQM, and Perceived Stress Scale (for correlation analysis, 213 respondents) - Respondents’ answers in numbers for every item of TFEQ-18-2004 (669 respondents) - Respondents’ answers in numbers for every item of TFEQ-51-unst-intl (301 respondents) Other files content some results: Cronbach's alpha.xlsx This file contains scrutinized results of assessing Cronbach's alpha for all these diagnostic techniques. validation group correlations.xlsx This file contains detailed results for Rank order correlations between scales of TFEQ-Ru15, SRQM, and Perceived Stress Scale (experimental sample of 213 respondents) SEM.zip This archive contains files of structural models for all four TFEQ techniques: TFEQ-Ru15, TFEQ-51-Ru-mod, TFEQ-18-2004, and TFEQ-51-unst-intl, performed in IBM SPSS Amos 23.0. The datafiles for these models as Excel files situated in the same folders.
DOI: 10.5281/zenodo.5483597
title: Transcription of Physical Properties Data Compilations Relevant to Energy Storage: I. Molten Salts: Eutectic Data

description: Transcription of Physical Properties Data Compilations Relevant to Energy Storage: I. Molten Salts: Eutectic Data. This is a large dataset of eutectic mixtures originally compiled and published in 1978. There was not previously a machine-readable version of this dataset. We have transcribed the 2-component mixtures into csv format. We have also included 6 basic features that are widely available on Pubchem for the individual components in the mixtures, and a list of components that were not available via Pubchem.
description: {"references": ["George J. Janz, Carolyn B. Allen, et al. Physical properties datacompilations relevant to energy storage: I. molten salts: Eutectic data. National Bureau of Standards, 1978.", "Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., Zaslavsky, L., Zhang, J., & Bolton, E. E. (2019). PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res., 49(D1), D1388\u2013D1395. https://doi.org/10.1093/nar/gkaa971"]}
DOI: 10.6084/m9.figshare.22616890.v1
title: Additional file 6 of The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

description: Additional file 6: Table S3. The distribution of repeat sequences in the 22 plastomes.
DOI: 10.6084/m9.figshare.7937303.v1
title: Hepatitis B virus mutation pattern rtL180M+A181C+M204V may contribute to entecavir resistance in clinical practice

description: <b>Background and Aims:</b> Entecavir (ETV) resistance of hepatitis B virus (HBV) conventionally requires rt184, 202, or 250 mutations plus lamivudine-resistance mutation (rtM204V/I ± L180M). This study aimed to clarify whether rtL180M+A181C+M204V mutations may contribute to HBV ETV resistance. <b>Methods:</b> Serum samples were collected from 22,009 patients who underwent resistance testing in Beijing 302 Hospital from 2007 to 2016. HBV reverse transcriptase (RT) gene was screened by direct sequencing and verified by clonal sequencing. Phenotypic analysis was performed for evaluating replication capacity and drug susceptibility. <b>Results:</b> Classical ETV-resistance mutations of HBV were detected in 1252 patients who were receiving ETV therapy. The rtA181C mutation was detected with rtL180M+M204V mutations in 18 lamivudine-experienced ETV-treated patients, and the emergence of the mutations was associated with virological breakthrough or inadequate virological response to ETV. Patient-derived representative rtA181C-containing mutants, rtL180M+A181C+M204V, rtL180M+A181C+M204V+M250V, and rtL180M+A181C+S202G+M204V, exhibited 45.7%, 25.9%, and 25.0% replication capacity and 85.6-, 356.1-, and 307.1-fold decreased susceptibility to ETV respectively compared to the wild-type strain, while the three mutants remained sensitive to tenofovir (TDF). Artificial elimination of rtA181C largely restored the rtL180M+A181C+M204V mutant’s sensitivity to ETV. Molecular modelling of viral RT binding to ETV showed that the rtL180M+A181C+M204V mutant had a less stable conformation compared to rtL180M+M204V mutant. In clinical practice, undetectable serum HBV DNA was achieved in two of five longitudinally followed rtA181C-positive patients who received switching-to TDF therapy, but not in the other three who received add-on adefovir therapy during observation. <b>Conclusions:</b> Both clinical and experimental data support rtL180M+A181C+M204V as a novel non-classical ETV-resistance mutation pattern.
DOI: 10.6084/m9.figshare.22616893
title: Additional file 7 of The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

description: Additional file 7: Table S4. Codon usage and relative synonymous codon usage (RSCU) values of protein-coding genes of the 22 plastomes.
DOI: 10.6084/m9.figshare.22616893.v1
title: Additional file 7 of The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

description: Additional file 7: Table S4. Codon usage and relative synonymous codon usage (RSCU) values of protein-coding genes of the 22 plastomes.
DOI: 10.6084/m9.figshare.22616896
title: Additional file 8 of The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

description: Additional file 8: Table S5. The nrITS Genbank accession numbers of all species used in phylogenetic analysis.
DOI: 10.6084/m9.figshare.7937462.v2
title: Towards a solution to MERS: protective human monoclonal antibodies targeting different domains and functions of the MERS-coronavirus spike glycoprotein

description: The Middle-East respiratory syndrome coronavirus (MERS-CoV) is a zoonotic virus that causes severe and often fatal respiratory disease in humans. Efforts to develop antibody-based therapies have focused on neutralizing antibodies that target the receptor binding domain of the viral spike protein thereby blocking receptor binding. Here, we developed a set of human monoclonal antibodies that target functionally distinct domains of the MERS-CoV spike protein. These antibodies belong to six distinct epitope groups and interfere with the three critical entry functions of the MERS-CoV spike protein: sialic acid binding, receptor binding and membrane fusion. Passive immunization with potently as well as with poorly neutralizing antibodies protected mice from lethal MERS-CoV challenge. Collectively, these antibodies offer new ways to gain humoral protection in humans against the emerging MERS-CoV by targeting different spike protein epitopes and functions.
DOI: 10.6084/m9.figshare.22616887
title: Additional file 5 of The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

description: Additional file 5: Table S2. Simple sequence repeats (SSRs) distribution in the twenty-two plastomes.
DOI: 10.6084/m9.figshare.22617406.v1
title: Additional file 4 of Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing

description: Additional file 4: Table S3. Intensity matrix of steroids.
DOI: 10.6084/m9.figshare.13180570.v3
title: YSIRK-G/S-directed translocation is required for <i>Streptococcus suis</i> to deliver diverse cell wall anchoring effectors contributing to bacterial pathogenicity

description: The <i>Streptococcus suis</i> serotype 2 (SS2) is a significant zoonotic pathogen that is responsible for various swine diseases, even causing cytokine storms of Streptococcal toxic shock-like syndromes amongst human. Cell wall anchoring proteins with a C-terminal LPxTG are considered to play vital roles during SS2 infection; however, their exporting mechanism across cytoplasmic membranes has remained vague. This study found that YSIRK-G/S was involved in the exportation of LPxTG-anchoring virulence factors MRP and SspA in virulent SS2 strain ZY05719. The whole-genome analysis indicated that diverse LPxTG proteins fused with an N-terminal YSIRK-G/S motif are encoded in strain ZY05719. Two novel LPxTG proteins SspB and YzpA were verified to be exported via a putative transport system that was dependent on the YSIRK-G/S directed translocation, and portrayed vital functions during the infection of SS2 strain ZY05719. Instead of exhibiting an inactivation of C5a peptidase in SspB, another LPxTG protein with an N-terminal YSIRK-G/S motif from <i>Streptococcus agalactiae</i> was depicted to cleave the C5a component of the host complement. The consequent domain-architecture retrieval determined more than 10,000 SspB/YzpA like proteins that are extensively distributed in the Gram-positive bacteria, and most of them harbor diverse glycosyl hydrolase or peptidase domains within their middle regions, thus presenting their capability to interact with host cells. The said findings provide compelling evidence that LPxTG proteins with an N-terminal YSIRK-G/S motif are polymorphic effectors secreted by Gram-positive bacteria, which can be further proposed to define as cell wall anchoring effectors in a new subset.