cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25405/data.ncl.9735080
title: ransomware_classification.zip

description: While various recent security-based approaches have focused on detecting and classifying ransomware at the network or system level, easy-to-use post-infection ransomware classification for the lay user has not been attempted before. In this vein, we investigate the possibility of classifying the ransomware a system is infected with simply based on a screenshot of the splash screen or the ransom note captured using a consumer camera commonly found in any modern mobile device. To train and evaluate our system, we have created a sample dataset of the splash screens of 50 well-known ransomware variants. In this dataset, only a single training image is available per ransomware. Instead of creating a large training dataset of ransomware screenshots, we simulate screenshot capture conditions via carefully designed data augmentation techniques, enabling simple and efficient one-shot learning. Moreover, using model uncertainty obtained via Bayesian approximation, we ensure special input cases such as unrelated non-ransomware images and previously-unseen ransomware variants are correctly identified for special handling and not misclassified.<br><br>A publication outlining the findings of our research is available here: <br>https://arxiv.org/abs/1908.06750<br><br>Instructions on how this data set can be used is found here: <br>https://github.com/atapour/ransomware-classification
DOI: 10.25386/genetics.8956511
title: Supplemental Material for Mutlu et al., 2019

description: File S1 contains detailed descriptions of all supplemental files. File S2 contains statistical analysis of all changes in transcript abundance, both significant and insignificant, between the ksp1-K47D mutant and wild type as determined using DESeq2. File S3 contains boxplots indicating non-normalized counts, depth-normalized counts, and regularized Log 2-normalized counts for each RNA-Seq sample analyzed. File S4 contains statistical analysis of all changes in transcript abundance, both significant and insignificant, between the ksp1-K47D mutant and wild type as determined using Tuxedo. File S5 presents summary boxplots of FPKM (Fragments Per Kilobase of transcript per Million mapped reads) distribution in Log 10 scale for each RNA sample. File S6 provides a listing of the union set of genes identified as undergoing statistically significant changes in transcript abundance between ksp1-K47D and wild type by both DESeq2 and Tuxedo analysis. File S7 provides the mass spectrometry data from Mascot and MaxQuant analysis for differentially abundant phosphopeptides between ksp1-K47D and wild type. File S8 provides the protein-protein interactions extracted from BioGRID.
DOI: 10.25386/genetics.8956511.v1
title: Supplemental Material for Mutlu et al., 2019

description: File S1 contains detailed descriptions of all supplemental files. File S2 contains statistical analysis of all changes in transcript abundance, both significant and insignificant, between the ksp1-K47D mutant and wild type as determined using DESeq2. File S3 contains boxplots indicating non-normalized counts, depth-normalized counts, and regularized Log 2-normalized counts for each RNA-Seq sample analyzed. File S4 contains statistical analysis of all changes in transcript abundance, both significant and insignificant, between the ksp1-K47D mutant and wild type as determined using Tuxedo. File S5 presents summary boxplots of FPKM (Fragments Per Kilobase of transcript per Million mapped reads) distribution in Log 10 scale for each RNA sample. File S6 provides a listing of the union set of genes identified as undergoing statistically significant changes in transcript abundance between ksp1-K47D and wild type by both DESeq2 and Tuxedo analysis. File S7 provides the mass spectrometry data from Mascot and MaxQuant analysis for differentially abundant phosphopeptides between ksp1-K47D and wild type. File S8 provides the protein-protein interactions extracted from BioGRID.
DOI: 10.6084/m9.figshare.9740228.v1
title: Additional file 1: of Effect of a low glycaemic index diet during pregnancy on maternal and cord blood metabolomic profiles: results from the ROLO randomized controlled trial

description: Results of the generalized additive models. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.9740228
title: Additional file 1: of Effect of a low glycaemic index diet during pregnancy on maternal and cord blood metabolomic profiles: results from the ROLO randomized controlled trial

description: Results of the generalized additive models. (XLSX 83 kb)
DOI: 10.25405/data.ncl.8131556
title: Frequency response data in the vicinity of the localised and trapped modes of a stepped fused quartz plate.

description: The data sets are frequency response data obtained by exciting the localised and energy trapped modes of a stepped fused quartz plate using electromagnetic actuation via the Lorentz force. Of particular interest are the degenerate shear horizontal modes as these represent the optimal configuration for resonance based mass detection. <br>The data is in csv format for easy plotting in Microsoft Excel or other similar software. The frequency response data is in terms of complex amplitude response function thus enabling all type of frequency responses plots to be replotted at the reader's convenience and in the form most familiar to them e.g. magnitude (polar), Nyquist etc. The resonant frequencies can be obtained from the frequency response data and are compared with theoretical predictions obtained by a commercial finite element software package (ANSYS). The comparison is tabulated and demonstrates remarkable agreement for the family of localised and trapped modes.<br>The reason for obtaining the data is to confirm the existence of energy trapped degenerate modes and to distinguish them form the localised modes which stem for the finite boundary. <br>The data was transduced electromagnetically and a lock-in amplifier (manufactured by Zurich Instruments) was used the extract the electromagnetic signature of resonance.<br>The device was fabricated by INEX Micotechnology using conventional microfabrication principles. Fused quartz substrates were used as the elastic medium due to inherent high Q-factor and elastic isotropy.
DOI: 10.25387/g3.9247832
title: Supplemental Material for Mouresan, Selle and Rönnegård, 2019

description: Figure S1 contains the accuracies (standard errors) obtained from all models tested (SNP-BLUP, alternative and additional models) under scenarios of simulated genetic architecture 1, 2 and 3.Figure S2 contains the time of execution for the alternative model W10 (categorical model with window of 10 SNPs) with increasing number of individuals (upper part) and with increasing number of markers (lower part) calculated as seconds per iteration.File S1 and File S2 contain the main code and functions for the simulation.File S3 contains the description of the theory of the equivalent models.Table S1 contains a summary of the additional models tested for each scenario of genetic architecture.Table S2 contrains the mean square error of the predicted EGBVs (MSEP) in the validation set (generation 2) for the scenario 0 (Sc0) with 10 QTLs per chromosome.
DOI: 10.25387/g3.9247832.v1
title: Supplemental Material for Mouresan, Selle and Rönnegård, 2019

description: Figure S1 contains the accuracies (standard errors) obtained from all models tested (SNP-BLUP, alternative and additional models) under scenarios of simulated genetic architecture 1, 2 and 3.Figure S2 contains the time of execution for the alternative model W10 (categorical model with window of 10 SNPs) with increasing number of individuals (upper part) and with increasing number of markers (lower part) calculated as seconds per iteration.File S1 and File S2 contain the main code and functions for the simulation.File S3 contains the description of the theory of the equivalent models.Table S1 contains a summary of the additional models tested for each scenario of genetic architecture.Table S2 contrains the mean square error of the predicted EGBVs (MSEP) in the validation set (generation 2) for the scenario 0 (Sc0) with 10 QTLs per chromosome.
DOI: 10.6084/m9.figshare.9202001
title: Tanushree Dutta_FailTales competition entry.png

description: The hypothesis tested in this research was: soil N<sub>2</sub>O production and emission from mine soils reclaimed with carbon and nitrogen substrates would be significantly greater than non-amended mine system. The outcomes of the study contradicted this hypothesis and revealed that N<sub>2</sub>O emission from amended mine soils were limited and was not significantly greater than N<sub>2</sub>O emitted by non-amended system, probably because the mine soil was excessive well-drained with &gt;50% coarse fragments and reducing conditions needed for denitrification production of N<sub>2</sub>O rarely developed. This research work taught me the importance of failing and that we should take negative observation seriously because it gives us new directions and tells a story of its own, which is what makes it a great FailTale.
DOI: 10.6084/m9.figshare.9202001.v1
title: Tanushree Dutta_FailTales competition entry.png

description: The hypothesis tested in this research was: soil N<sub>2</sub>O production and emission from mine soils reclaimed with carbon and nitrogen substrates would be significantly greater than non-amended mine system. The outcomes of the study contradicted this hypothesis and revealed that N<sub>2</sub>O emission from amended mine soils were limited and was not significantly greater than N<sub>2</sub>O emitted by non-amended system, probably because the mine soil was excessive well-drained with &gt;50% coarse fragments and reducing conditions needed for denitrification production of N<sub>2</sub>O rarely developed. This research work taught me the importance of failing and that we should take negative observation seriously because it gives us new directions and tells a story of its own, which is what makes it a great FailTale.
DOI: 10.6084/m9.figshare.3761562.v1215
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25573/data.9693251
title: Dataset: Carbon sequestration and sediment accretion in San Francisco Bay tidal wetlands

description: Tidal wetlands play an important role with respect to climate change because of both their sensitivity to sea-level rise and their ability to sequester carbon dioxide from the atmosphere. Policy-based interest in carbon sequestration has increased recently, and wetland restoration projects have potential for carbon credits through soil carbon sequestration. We measured sediment accretion, mineral and organic matter accumulation, and carbon sequestration rates using 137Cs and 210Pb downcore distributions at six natural tidal wetlands in the San Francisco Bay Estuary. The accretion rates were, in general, 0.2 - 0.5 cm year<sup>-1</sup>, indicating that local wetlands are keeping pace with recent rates of sea-level rise. Mineral accumulation rates were higher in salt marshes and at low-marsh stations within individual sites. The average carbon sequestration rate based on 210Pb dating was 79 g C m<sup>-2</sup> year<sup>-1</sup>, with slightly higher rates based on 137Cs dating. There was little difference in the sequestration rates among sites or across stations within sites, indicating that a single carbon sequestration rate could be used for crediting tidal wetland restoration projects within the Estuary. This data release is associated with the following publication in Estuaries and Coasts: https://doi.org/10.1007/s12237-012-9508-9.
DOI: 10.25573/data.9747065
title: Dataset: Accretion and sediment accumulation in impounded and unimpounded marshes in the Delaware Estuary and Barnegat Bay

description: This data release includes carbon stocks and geochronic data for impounded and unimpounded tidal marshes of coastal Delaware and Barnegat Bay. Our studies have examined 1) the relative accretionary status of selected managed and natural marshlands, 2) the relative influences of mineral and organic solids accumulation on rates of accretion, and 3) the stability of organic carbon accumulation in Spartina alterniflora-dominated salt marshes. Accretion rates were measured using 137Cs and 210Pb radiometric methods, which are commonly used in tidal marsh studies but not always together.<br>
DOI: 10.25405/data.ncl.9735080.v1
title: ransomware_classification.zip

description: While various recent security-based approaches have focused on detecting and classifying ransomware at the network or system level, easy-to-use post-infection ransomware classification for the lay user has not been attempted before. In this vein, we investigate the possibility of classifying the ransomware a system is infected with simply based on a screenshot of the splash screen or the ransom note captured using a consumer camera commonly found in any modern mobile device. To train and evaluate our system, we have created a sample dataset of the splash screens of 50 well-known ransomware variants. In this dataset, only a single training image is available per ransomware. Instead of creating a large training dataset of ransomware screenshots, we simulate screenshot capture conditions via carefully designed data augmentation techniques, enabling simple and efficient one-shot learning. Moreover, using model uncertainty obtained via Bayesian approximation, we ensure special input cases such as unrelated non-ransomware images and previously-unseen ransomware variants are correctly identified for special handling and not misclassified.<br><br>A publication outlining the findings of our research is available here: <br>https://arxiv.org/abs/1908.06750<br><br>Instructions on how this data set can be used is found here: <br>https://github.com/atapour/ransomware-classification
DOI: 10.25405/data.ncl.9755045
title: Data for "Characterizing the Randot Preschool Stereotest" Read et al 2019

description: This folder contains R markdown files, e.g. AnalyseValidityData6.Rmd, containing analysis code, and associated .RData files containing the data.<br>You will need R, Rstudio and associated libraries (available from rstudio.com, www.r-project.org). <br>To generate the statistical analysis and figures shown in the paper, open up each .Rmd file and hit "knit" to run the code and generate a Word or PDF file.<br><br>
DOI: 10.6084/m9.figshare.3761562.v1216
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9117092.v2
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(yadd)

description: secondary structures of eukaryotic group II introns rfam set (yadd)
DOI: 10.6084/m9.figshare.3761562.v1217
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9117095.v5
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd)

description: secondary structures of eukaryotic group II introns rfam set (no yadd)
DOI: 10.25573/data.9747065.v1
title: Dataset: Accretion and sediment accumulation in impounded and unimpounded marshes in the Delaware Estuary and Barnegat Bay

description: This data release includes carbon stocks and geochronic data for impounded and unimpounded tidal marshes of coastal Delaware and Barnegat Bay. Our studies have examined 1) the relative accretionary status of selected managed and natural marshlands, 2) the relative influences of mineral and organic solids accumulation on rates of accretion, and 3) the stability of organic carbon accumulation in Spartina alterniflora-dominated salt marshes. Accretion rates were measured using 137Cs and 210Pb radiometric methods, which are commonly used in tidal marsh studies but not always together.<br>
DOI: 10.25386/genetics.9272834.v2
title: Supplemental Material for Mulder et al., 2019

description: This file contains additional figures.
DOI: 10.25573/data.9693251.v1
title: Dataset: Carbon sequestration and sediment accretion in San Francisco Bay tidal wetlands

description: Tidal wetlands play an important role with respect to climate change because of both their sensitivity to sea-level rise and their ability to sequester carbon dioxide from the atmosphere. Policy-based interest in carbon sequestration has increased recently, and wetland restoration projects have potential for carbon credits through soil carbon sequestration. We measured sediment accretion, mineral and organic matter accumulation, and carbon sequestration rates using 137Cs and 210Pb downcore distributions at six natural tidal wetlands in the San Francisco Bay Estuary. The accretion rates were, in general, 0.2 - 0.5 cm year<sup>-1</sup>, indicating that local wetlands are keeping pace with recent rates of sea-level rise. Mineral accumulation rates were higher in salt marshes and at low-marsh stations within individual sites. The average carbon sequestration rate based on 210Pb dating was 79 g C m<sup>-2</sup> year<sup>-1</sup>, with slightly higher rates based on 137Cs dating. There was little difference in the sequestration rates among sites or across stations within sites, indicating that a single carbon sequestration rate could be used for crediting tidal wetland restoration projects within the Estuary. This data release is associated with the following publication in Estuaries and Coasts: https://doi.org/10.1007/s12237-012-9508-9.
DOI: 10.6084/m9.figshare.3761562.v1220
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25386/genetics.9705281
title: Supplemental Material for Castellano et al., 2019

description: Supplementary Analyses. Forward Simulations. Supplementary Tables and Figures.<br>
DOI: 10.25386/genetics.9705281.v1
title: Supplemental Material for Castellano et al., 2019

description: Supplementary Analyses. Forward Simulations. Supplementary Tables and Figures.<br>
DOI: 10.25386/genetics.9742577
title: Supplemental Material for Berg et al., 2019

description: Supplemental figures and tables for Berg <i>et al. </i>"Modulating mistranslation potential of tRNA<sup>Ser</sup> in <i>Saccharomyces cerevisiae</i>"
DOI: 10.25387/g3.9724019
title: Supplemental Material for Ganguly et al., 2019

description: Supplementary tables providing information on whole-genome bisulfite and RNA sequencing datasets generated in the associated study.
DOI: 10.25387/g3.9724019.v1
title: Supplemental Material for Ganguly et al., 2019

description: Supplementary tables providing information on whole-genome bisulfite and RNA sequencing datasets generated in the associated study.
DOI: 10.25386/genetics.9742577.v1
title: Supplemental Material for Berg et al., 2019

description: Supplemental figures and tables for Berg <i>et al. </i>"Modulating mistranslation potential of tRNA<sup>Ser</sup> in <i>Saccharomyces cerevisiae</i>"
DOI: 10.25405/data.ncl.8323604.v1
title: Towards efficient use of noble metals via exsolution exemplified for CO oxidation

description: Many catalysts and in particular automotive exhaust catalysts usually consist of noble metal nanoparticles dispersed on metal oxide supports. While highly active, such catalysts are expensive and prone to deactivation by sintering and thus alternative methods for their production are being sought to ensure more efficient use of noble metals. Exsolution has been shown to be an approach to produce confined nanoparticles, which in turn are more stable against agglomeration, and, at the same time strained, displaying enhanced activity. While exsolution has been extensively investigated for relatively high metal loadings, it has yet to be explored for dilute loadings which is expected to be more challenging but more suitable for application of noble metals. Here we explore the substitution of Rh into an A-site deficient perovskite titante aiming to investigate the possibility of exsolving from dilute amounts of noble metal substituted perovskites. We show that this is possible and in spite of certain limitations, they still compete well against conventionally prepared samples with higher apparent surface loading when applied for CO oxidation. <br>
DOI: 10.25386/genetics.7898075.v3
title: Supplemental Material for He, Cuentas-Condori, and Miller, 2019

description: supplemental figures and table<br>
DOI: 10.13145/bacdive20797.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20798.20230509.8
title: Stigmatella hybrida

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20799.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20800.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20801.20230509.8
title: Stigmatella hybrida

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20802.20230509.8
title: Archangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20803.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20804.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20805.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20806.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20807.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20808.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20809.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20810.20230509.8
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive20811.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.