cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10539016
title: Ischemia promotes hypertrophic nerve trunk formation and enteric neuron cell death in Hirschsprung's disease: Source data

description: Items
Annotation


ST-cluster_distrition.csv
A table containing the number of ST-clusters across samples


DEGs_C10_v_restCMusc.csv
A table containing the result of DEG analysis for the comparison between ST cluster C10 and other muscular ST clusters (C8 and C9)


DEGs_C13_v_C12.csv
A table containing the result of DEG analysis for the comparison between ST cluster C13 (HNTs) and C12 (ganglia).


DEGs_ST-cluster_total_marker.csv
A table containing the markers for each ST cluster.


DEGs_iMusc_ganglia_v_nMusc_ganglia.csv
A table containing the result of DEG analysis for the comparison between ST iMusc_ganglia and nMusc_ganglia.


DEGs_sc_all_markers.csv
A table containing the markers of single-cell populations.


DEGs_pseudotime_CLDN1.csv
A table containing the results of gene differentially expressed during the differentiation from GREM1+ FLCs to CLDN1+ FLCs.


Gene_set_score_for_C12_sub.csv
A table containing the results of gene set score in the sub-population of ganglia (C12).


scRNA-seq_reference_raw.RDS
A Seurat object containing the raw count and meta matrix of the single-cell reference 


ST-seq_raw_count.txt.gz
A raw count matrix of ST-seq data


ST-spots_meta_info.txt
A table containing the metainformation of ST-seq data


Object_of_bulk_RNA-seq.RDS
A Seurat object used to reproduce the results of gene set scores in bulk RNA-seq.


ST-spots_cell_abundance.txt
A table containing the abundance of single-cell populations in each ST-spot.


Cell_trajectory_of_FLCs.RDS
A Seurat object used to reproduce the results of the cell trajectory of fibroblast-like cells.


p_value_scRNA-seq_abundance.xlsx
A table containing the p-value of cell abundance across groups for single-cell populations


CIBERSORT_CPM_count_matrix.txt
A table containing the CMP matrix of bulk RNA-seq data for CIBERSORT


CIBERSORT_ST_raw_matrix.txt
A table containing the raw count matrix of ST-seq data for CIBERSORT


scRNA-seq_distribution.csv
A table containing the distribution of single-cell populations across the sample


DEGs_FLC_APOD_across_group.csv
A table containing the DEGs in the comparison among APOD+ FLCs in different groups


Gene_set_score_for_sc_Pericyte.csv
A table containing the results of gene set score in the single-cell population of pericytes


Gene_set_score_for_sc_Endo_score.csv
A table containing the results of gene set score in the single-cell population of endothelial cells


ENC_FLC_vessel_interaction.RDS
A Cellchat object used to reproduce the results of cell-cell interaction among ENCs, glial cells, APOD+ FLCs, CLDN1+ FLCs, perictyes, and vascular endothelial cells.


Metainfor_FASTQ1.xlsx
Metainformation of FASTQ files


Metainfor_FASTQ2.xlsx
Metainformation of FASTQ files
DOI: 10.5281/zenodo.10604379
title: Hippocampal LFP analysis in rats treated with reserpine (Fibromyalgia model)

description: Dataset obtained in the analysis of chronic recordings of local field potential of the dorsal hippocampus in SD rats trated with IP reserpine (fibromyalgia model). 

Used in the journal paper:

Hippocampal oscillatory dynamics and sleep atonia are altered in an animal model of fibromyalgia: Implications in the search for biomarkersArantxa Blasco-Serra, Gloria Alfosea-Cuadrado, Ana Cervera-Ferri, Eva M González-Soler, Ana Lloret , Joana Martínez-Ricós, Vicent Teruel-Martí, Alfonso A Valverde-NavarroDOI: 10.1002/cne.24829



 


Description of the dataset:

Specimen: code of the animal

Status: control (before reserpine administration), reserpina (following reserpine administration)

Statuscompl: control (before reserpine administration), PR (days following reserpine administration, i.e 13PR = 13 days folloing reserpine administration)

Day: recorging day

ti and tf: inicial and end time of the window analyzed 

Spectral analysis: band power and band ratio of the frequency bands (Hz):



b1=[0.3 1.5];

b2=[1.5 4];

b3=[4 12];

b4=[12 16];

b5=[16 30];

b6=[30 80];

b7=[80 125];

band=[0.3 125];


Wavelet analysis: detection of regions with predominance of slow waves (b1) and theta (b3) 

    


b3_regions
b3_ratio
b3_meanfreq
b3_std
b3_width
b3_fragmentation
b1_regions
b1_ratio
b1_meanfreq
b1_std
b1_width
b1_fragmentation




EEMG analysis: mean value and standard deviation of the RMS EMG (EMGmean    EMGstd)

Sleep stage: determination of the sleep stage from EMG, slow waves, delta and theta results. 

Transitions: periods with diferent sleep stage from the precedent.
DOI: 10.5281/zenodo.10604380
title: Hippocampal LFP analysis in rats treated with reserpine (Fibromyalgia model)

description: Dataset obtained in the analysis of chronic recordings of local field potential of the dorsal hippocampus in SD rats trated with IP reserpine (fibromyalgia model). 

Used in the journal paper:

Hippocampal oscillatory dynamics and sleep atonia are altered in an animal model of fibromyalgia: Implications in the search for biomarkersArantxa Blasco-Serra, Gloria Alfosea-Cuadrado, Ana Cervera-Ferri, Eva M González-Soler, Ana Lloret , Joana Martínez-Ricós, Vicent Teruel-Martí, Alfonso A Valverde-NavarroDOI: 10.1002/cne.24829



 


Description of the dataset:

Specimen: code of the animal

Status: control (before reserpine administration), reserpina (following reserpine administration)

Statuscompl: control (before reserpine administration), PR (days following reserpine administration, i.e 13PR = 13 days folloing reserpine administration)

Day: recorging day

ti and tf: inicial and end time of the window analyzed 

Spectral analysis: band power and band ratio of the frequency bands (Hz):



b1=[0.3 1.5];

b2=[1.5 4];

b3=[4 12];

b4=[12 16];

b5=[16 30];

b6=[30 80];

b7=[80 125];

band=[0.3 125];


Wavelet analysis: detection of regions with predominance of slow waves (b1) and theta (b3) 

    


b3_regions
b3_ratio
b3_meanfreq
b3_std
b3_width
b3_fragmentation
b1_regions
b1_ratio
b1_meanfreq
b1_std
b1_width
b1_fragmentation




EEMG analysis: mean value and standard deviation of the RMS EMG (EMGmean    EMGstd)

Sleep stage: determination of the sleep stage from EMG, slow waves, delta and theta results. 

Transitions: periods with diferent sleep stage from the precedent.
DOI: 10.5281/zenodo.10579530
title: LFP recordings in urethane-anesthetized rats with IP administration of FG-7142

description: Recordings used in the papers:

 



 Sex differences in amygdalohippocampal oscillations and neuronal activation in a rodent anxiety model and in response to infralimbic deep brain stimulation. 

Vila-Merkle H, González-Martínez A, Campos-Jiménez R, Martínez-Ricós J, Teruel-Martí V, Lloret A, Blasco-Serra A, Cervera-Ferri A. Front Behav Neurosci. 2023 Feb 23;17:1122163. doi: 10.3389/fnbeh.2023.1122163. eCollection 2023. PMID: 36910127Abstrct:

The Oscillatory Profile Induced by the Anxiogenic Drug FG-7142 in the Amygdala-Hippocampal Network Is Reversed by Infralimbic Deep Brain Stimulation: Relevance for Mood Disorders. 

Vila-Merkle H, González-Martínez A, Campos-Jiménez R, Martínez-Ricós J, Teruel-Martí V, Blasco-Serra A, Lloret A, Celada P, Cervera-Ferri A. Biomedicines. 2021 Jul 6;9(7):783. doi: 10.3390/biomedicines9070783. PMID: 34356846Data descriptionAll recordings include a basal period, without manipulation, a saline period (IP injection of saline serum), a FG period (injection of FG-7142), a DBS period (with administration of 1-hour infralimbic deep brain stimulation) and a post period (after the DBS). In the title of each recording, F stands for female rats and M for male rats, LD indicates Low dose of FG-7142 (7.5 mg/kg) and the numbers correspond to the exemplar and recording date.
DOI: 10.5281/zenodo.10579531
title: LFP recordings in urethane-anesthetized rats with IP administration of FG-7142

description: Recordings used in the papers:

 



 Sex differences in amygdalohippocampal oscillations and neuronal activation in a rodent anxiety model and in response to infralimbic deep brain stimulation. 

Vila-Merkle H, González-Martínez A, Campos-Jiménez R, Martínez-Ricós J, Teruel-Martí V, Lloret A, Blasco-Serra A, Cervera-Ferri A. Front Behav Neurosci. 2023 Feb 23;17:1122163. doi: 10.3389/fnbeh.2023.1122163. eCollection 2023. PMID: 36910127Abstrct:

The Oscillatory Profile Induced by the Anxiogenic Drug FG-7142 in the Amygdala-Hippocampal Network Is Reversed by Infralimbic Deep Brain Stimulation: Relevance for Mood Disorders. 

Vila-Merkle H, González-Martínez A, Campos-Jiménez R, Martínez-Ricós J, Teruel-Martí V, Blasco-Serra A, Lloret A, Celada P, Cervera-Ferri A. Biomedicines. 2021 Jul 6;9(7):783. doi: 10.3390/biomedicines9070783. PMID: 34356846Data descriptionAll recordings include a basal period, without manipulation, a saline period (IP injection of saline serum), a FG period (injection of FG-7142), a DBS period (with administration of 1-hour infralimbic deep brain stimulation) and a post period (after the DBS). In the title of each recording, F stands for female rats and M for male rats, LD indicates Low dose of FG-7142 (7.5 mg/kg) and the numbers correspond to the exemplar and recording date.
DOI: 10.5519/qd.po1h50xf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (824205 records)
DOI: 10.5519/qd.zu327tmq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5769875 records)
DOI: 10.6084/m9.figshare.25138964
title: 20240204_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25138964.v1
title: 20240204_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.34740/kaggle/dsv/7546621
title: MoviesDatasets
DOI: 10.34740/kaggle/dsv/7546624
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.10613530
title: Supplementary information to Hazard vs. exposure: Does it make a difference in identifying chemicals with persistence and mobility concerns?

description: Supplementary information to the paper 

Hazard vs. exposure: Does it make a difference in identifying chemicals with persistence and mobility concerns?
DOI: 10.5281/zenodo.10613531
title: Supplementary information to Hazard vs. exposure: Does it make a difference in identifying chemicals with persistence and mobility concerns?

description: Supplementary information to the paper 

Hazard vs. exposure: Does it make a difference in identifying chemicals with persistence and mobility concerns?
DOI: 10.5281/zenodo.8405045
title: Data for Hierarchical Controls of Mixed Sediment Transport in a Series of Unsteady Flows

description: The dataset contain three files namely, cs_all, fluxes and case study data. 


'cs_all' contains the cross-section data presented in the associated manuscript for all simulation cases. This data was used in the following figures in the associated manuscript: Figures 6-10, 15C


'fluxes' contains the flux data for the flux surface mentioned in the associated manuscript. This data was used in the following figures in the associated manuscript: Figures 1,2.


'case study data' contains the rainfall, wind speed and backscatter data in different sheets. The bed grain size distributions are also given for the floodplain. This data was used in the following figures in the associated manuscript: Figures 11G, 14, 15A
DOI: 10.5281/zenodo.8405046
title: Data for Hierarchical Controls of Mixed Sediment Transport in a Series of Unsteady Flows

description: The dataset contain three files namely, cs_all, fluxes and case study data. 


'cs_all' contains the cross-section data presented in the associated manuscript for all simulation cases. This data was used in the following figures in the associated manuscript: Figures 6-10, 15C


'fluxes' contains the flux data for the flux surface mentioned in the associated manuscript. This data was used in the following figures in the associated manuscript: Figures 1,2.


'case study data' contains the rainfall, wind speed and backscatter data in different sheets. The bed grain size distributions are also given for the floodplain. This data was used in the following figures in the associated manuscript: Figures 11G, 14, 15A
DOI: 10.5281/zenodo.10613557
title: melanotaenia_monticola_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10613558
title: melanotaenia_monticola_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10613555
title: INTERNATIONAL SCIENTIFIC CONFERENCE  "REINTEGRATION OF THE TERRITORIES LIBERATED FROM OCCUPATİON  INTO THE COUNTRY`S ECONOMY: GOALS AND DIRECTIONS"

description: INTERNATIONAL SCIENTIFIC CONFERENCE

 

"REINTEGRATION OF THE TERRITORIES LIBERATED FROM OCCUPATİON 

INTO THE COUNTRY`S ECONOMY: GOALS AND DIRECTIONS"
DOI: 10.5281/zenodo.10613556
title: INTERNATIONAL SCIENTIFIC CONFERENCE  "REINTEGRATION OF THE TERRITORIES LIBERATED FROM OCCUPATİON  INTO THE COUNTRY`S ECONOMY: GOALS AND DIRECTIONS"

description: INTERNATIONAL SCIENTIFIC CONFERENCE

 

"REINTEGRATION OF THE TERRITORIES LIBERATED FROM OCCUPATİON 

INTO THE COUNTRY`S ECONOMY: GOALS AND DIRECTIONS"
DOI: 10.5281/zenodo.8206460
title: Data for "The DESI One-Percent Survey: Evidence for Assembly Bias from Low-Redshift Counts-in-Cylinders Measurements"

description: Summary statistics, covariance matrices, and MCMC results for each of our HOD samples. For links to the original data catalogs and instructions to reproduce the analysis, see the README at: https://github.com/AlanPearl/galtab/tree/main/galtab/paper2/

In brief, the desi_observations/desi_obs_*.npz files contain information about each threshold/redshift sample. Data is loaded via `obs_data = np.load(filename, allow_pickle=True)`, and all available fields can be shown via `obs_data.keys()`. Most importantly, our target data and its corresponding covariance matrix can be accessed with the "mean" and "cov" keys, respectively. These arrays can be sliced into our three observables using the slice objects accessed with the "slice_n", "slice_wp", and "slice_cic" keys.The emcee MCMC chains for each sample can be found under desi_results/results_*/emcee_backend.h5. To access the chain data (i.e., to construct corner plots of our HOD parameters), you can either follow our paper plot notebooks linked in the README above, or see the emcee documentation.
DOI: 10.5281/zenodo.8206461
title: Data for "The DESI One-Percent Survey: Evidence for Assembly Bias from Low-Redshift Counts-in-Cylinders Measurements"

description: Summary statistics, covariance matrices, and MCMC results for each of our HOD samples. For links to the original data catalogs and instructions to reproduce the analysis, see the README at: https://github.com/AlanPearl/galtab/tree/main/galtab/paper2/

In brief, the desi_observations/desi_obs_*.npz files contain information about each threshold/redshift sample. Data is loaded via `obs_data = np.load(filename, allow_pickle=True)`, and all available fields can be shown via `obs_data.keys()`. Most importantly, our target data and its corresponding covariance matrix can be accessed with the "mean" and "cov" keys, respectively. These arrays can be sliced into our three observables using the slice objects accessed with the "slice_n", "slice_wp", and "slice_cic" keys.The emcee MCMC chains for each sample can be found under desi_results/results_*/emcee_backend.h5. To access the chain data (i.e., to construct corner plots of our HOD parameters), you can either follow our paper plot notebooks linked in the README above, or see the emcee documentation.
DOI: 10.6084/m9.figshare.25009223
title: Supplementary Material

description: <pre>Supplementary material regarding the bibliographic review and results presented in the work.</pre><pre></pre><br>
DOI: 10.6084/m9.figshare.25009223.v1
title: Supplementary Material

description: <pre>Supplementary material regarding the bibliographic review and results presented in the work.</pre><pre></pre><br>
DOI: 10.6084/m9.figshare.25138943
title: Dataset: Grip Strength, Body Composition, and Academic Performance in College Students

description: This dataset encompasses handgrip strength (HGS) measurements, end-of-semester Grade Point Average (GPA), height (in meters), and body mass (in kilograms) for N = 405 predominantly first-year college students. The data were collected as part of a comprehensive study aimed at investigating the relationship between physical strength, academic performance, and general health indicators among young adults.<b>Key Components:</b><b>Handgrip Strength (HGS):</b> Measurements were taken using a standardized protocol, with the Maximum Average Handgrip Strength (MaxAvgHGS) calculated from the highest average of three trials for each hand.<b>Grade Point Avergae (GPA):</b> End of semester GPA<b>Anthropometric Data:</b> Includes height and body mass, from which Body Mass Index (BMI) was derived for each participant.<b>Normalized MaxAvgHGS:</b> To account for variations in body size, the MaxAvgHGS was normalized using allometric scaling.
DOI: 10.6084/m9.figshare.25138928
title: Laboratory Dynamic Creep Test Samples

description: 118 dynamic creep test samples from a laboratory test including 10 different influencing factors.
DOI: 10.6084/m9.figshare.25138697
title: Fig.5_Files

description: Fig.5_Files
DOI: 10.6084/m9.figshare.25138697.v2
title: Fig.5_Files

description: Fig.5_Files
DOI: 10.6084/m9.figshare.25138697.v1
title: Fig.5_Files

description: Fig.5_Files
DOI: 10.5281/zenodo.10613369
title: Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2
title: Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2

description: Data for molecular dynamics simulations (PDB snapshots, cleaned trajectories, starting structure, simulation parameters) described in "Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2".
DOI: 10.5281/zenodo.10613370
title: Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2
title: Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2

description: Data for molecular dynamics simulations (PDB snapshots, cleaned trajectories, starting structure, simulation parameters) described in "Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2".
DOI: 10.6084/m9.figshare.25139018
title: High Performance Concrete Data

description: The experimental dataset included 597 datasets of compressive strength, 282 datasets of slump, and 264 datasets of electrical resistivity collected from various sources.
DOI: 10.15151/esrf-es-1497391821
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.5281/zenodo.10613600
title: melanotaenia_pygmaea_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10613601
title: melanotaenia_pygmaea_spades_01.fasta.gz

description: .
DOI: 10.5517/ccdc.csd.cc2c53th
title: CCDC 2179666: Experimental Crystal Structure Determination

description: Related Article: Yao-Yue Fan, Xin-Ru Zhang, Cheng-Yu Zheng, Ying Li, Jian-Min Yue|2024|Tetrahedron|152|133841|doi:10.1016/j.tet.2024.133841
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8zwj
title: CCDC 2183388: Experimental Crystal Structure Determination

description: Related Article: Rodney A. Fernandes, Gujjula V. Ramakrishna|2022|J.Org.Chem.|89|815|doi:10.1021/acs.joc.2c02094
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2db4vr
title: CCDC 2214294: Experimental Crystal Structure Determination

description: Related Article: Xing Liu, Fang-Fang Gao, Yuan Xue, Jun Luo, Chao Jiang|2024|J.Org.Chem.|89|1417|doi:10.1021/acs.joc.3c01911
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2db4ws
title: CCDC 2214295: Experimental Crystal Structure Determination

description: Related Article: Xing Liu, Fang-Fang Gao, Yuan Xue, Jun Luo, Chao Jiang|2024|J.Org.Chem.|89|1417|doi:10.1021/acs.joc.3c01911
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2db4xt
title: CCDC 2214296: Experimental Crystal Structure Determination

description: Related Article: Xing Liu, Fang-Fang Gao, Yuan Xue, Jun Luo, Chao Jiang|2024|J.Org.Chem.|89|1417|doi:10.1021/acs.joc.3c01911
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fm6bm
title: CCDC 2252780: Experimental Crystal Structure Determination

description: Related Article: Zhiguo Zheng, Qian Liu, Xiaolin Peng, Zhichao Jin, Jian Wu|2024|Org.Lett.|26|917|doi:10.1021/acs.orglett.3c04189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gh4ty
title: CCDC 2278680: Experimental Crystal Structure Determination

description: Related Article: Svetlana S. Degtyareva, Daniil A. Bardonov, Anna V. Afanaseva, Lada N. Puntus, Konstantin A. Lyssenko, Kirill P. Birin, Mikhail E. Minyaev, Julia V. Burykina, Ilya V. Taydakov, Evgenia A. Varaksina, Ilya E. Nifant’ev, Dmitrii M. Roitershtein|2024|Inorg.Chem.|63|1867|doi:10.1021/acs.inorgchem.3c03492
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.