cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.61673
title: Spatial Evolve Algorithm Results For Random Topology Minimum Normalized Rank - Msc Dissertation

description: A data set containing the results of the spatial evolve lookup algorithm. The topologies used for the spatial tournaments has been random between, small world, random and complete. The objective function taken into account has been the minimum normalized rank. Two files are contained here based on the sample size. All 132 strategies of the Axelrod have been used.
DOI: 10.5281/zenodo.61674
title: Spatial Evolve Algorithm Results For Erdős Rényi Topology Median Normalized Rank - Msc Dissertation

description: A data set containing the results of the spatial evolve lookup algorithm. The topology used for the spatial tournaments has been the Erdős Rényi random network. The objective function taken into account has been the median normalized rank. Three files are contained here based on the strategies list, deterministic and non and on the sample size.
DOI: 10.5281/zenodo.61677
title: Spatial Evolve Algorithm Results For Complete Topology Median Normalized Rank - Msc Dissertation

description: A data set containing the results of the spatial evolve lookup algorithm. The topology used for the spatial tournaments has been a complete network. The objective function taken into account has been the median normalized rank. Three files are contained here based on the list of strategies,deterministic and non, and on the sample size.
DOI: 10.5281/zenodo.61678
title: Spatial Evolve Algorithm Results For Watts Strogatz Topology Median Normalized Rank - Msc Dissertation

description: A data set containing the results of the spatial evolve lookup algorithm. The topology used for the spatial tournaments has been the Watts Strogatz small world network. The objective function taken into account has been the median normalized rank. Three files are contained here based on the list of strategies,deterministic and non, and on the sample size.
DOI: 10.5281/zenodo.61679
title: Spatial Evolve Algorithm Results For Erdos Renyi Topology Median Normalized Rank - Msc Dissertation

description: A data set containing the results of the spatial evolve lookup algorithm. The topology used for the spatial tournaments has been the Erdős Rényi random network. The objective function taken into account has been the median normalized rank. Three files are contained here based on the list of strategies,deterministic and non, and on the sample size.
DOI: 10.5281/zenodo.61680
title: Im2Latex-Dataset

description: test
DOI: 10.5281/zenodo.629104
title: Romans Français Du Dix-Neuvième Siècle

description: This is a text collection prepared for use with the TXM text analysis tool (http://textometrie.ens-lyon.fr/). The collection contains a selection of adventure, crime fiction, education and fantastic novels from the 1860s, 1870s and 1880s. There are currently 36 novels with a total of about 4 million words. All texts have been tokenised, lemmatised and POS-tagged using TreeTagger.
DOI: 10.13012/b2idb-7735354_v1
title: Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data
DOI: 10.25377/sussex.5687875
title: Data for research paper: The time course of ongoing activity during neuritis and following axonal transport disruption

description: <b>Data for paper appearing in 'Journal of Neurophysiology'</b><br><br>C- and A- fibre electrophysiology time course data following 
neuritis and vinblastine-induced axonal transport disruption. Data set includes conduction velocities, ongoing activity 
and axonal mechanical sensitivity data.<br><br><b>Abstract from research paper:</b><br>Local nerve inflammation
(neuritis) leads to ongoing activity and axonal mechanical sensitivity (AMS)
along intact nociceptor axons, and disrupts axonal transport.  This
phenomenon forms the most feasible cause of radiating pain, such as
sciatica.  We have previously shown that axonal transport disruption
without inflammation or degeneration also leads to AMS, but does not cause
ongoing activity at the time point when AMS occurs, despite causing cutaneous
hypersensitivity. However, there have been no systematic studies of ongoing
activity during neuritis or non-inflammatory axonal transport disruption. In
this study, we present the time course of ongoing activity from primary sensory
neurons following neuritis and vinblastine-induced axonal transport disruption.
Whereas 24% of C/slow Aδ-fiber neurons had ongoing activity during neuritis,
few (&lt;10%) A- and C-fiber neurons showed ongoing activity 1-15 days
following vinblastine treatment.  In contrast, AMS increased transiently at
the vinblastine treatment site, peaking on day 4-5 (28% of C/slow Aδ-fiber
neurons) and resolved by day 15. Conduction velocities were slowed in all
groups.  In summary, the disruption of axonal transport without
inflammation does not lead to ongoing activity in sensory neurons, including
nociceptors, but does cause a rapid and transient development of AMS. Since it
is proposed that AMS underlies mechanically-induced radiating pain, and a
transient disruption of axonal transport (as previously reported) leads to transient
AMS, it follows that processes that disrupt axonal transport, such as neuritis,
must persist to maintain AMS and the associated symptoms.

<br>
DOI: 10.5281/zenodo.263694
title: Single-Cell Atac-Seq Control Of Cross-Contaminations (Experiment 1)

description: On the Fluidigm C1 platform for single-cell analysis, the cells are captured in 96 chambers arranged serially, and then washed before further processing.  Thus, debris present from the loading medium or released by captured cells upstream are a possible source of contamination.  We generated a control datasets using the single-cell ATAC-seq protocol available from Fluidigm's ScriptHub.  We cultivated human Hep G2 and mouse Hepa 1-6 (both are liver cancer cell lines), stained them with green and red calceins (respectively), and loaded them at equal concentration in a Fluidigm medium flow cell (old design), before running the C1 single-cell ATAC-seq program.

The data deposited here is a sequencing run (Illumina MiSeq) of these ATAC-seq libraries. The metadata indicating the contents of each well is being uploaded separately and this record will be updated once the DOIs are available.
DOI: 10.5281/zenodo.263695
title: Single-Cell Atac-Seq Control Of Cross-Contaminations (Experiment 2)

description: On the Fluidigm C1 platform for single-cell analysis, the cells are captured in 96 chambers arranged serially, and then washed before further processing.  Thus, debris present from the loading medium or released by captured cells upstream are a possible source of contamination.  We generated a control datasets using the single-cell ATAC-seq protocol available from Fluidigm's ScriptHub.  We cultivated human Hep G2 and mouse Hepa 1-6 (both are liver cancer cell lines), stained them with green and red calceins (respectively), and loaded them at equal concentration in a Fluidigm medium flow cell (old design), before running the C1 single-cell ATAC-seq program. To evaluate damage and carry-over of debris from FACS-sorting, two IFCs were run in two C1 machines in parallel.  In the first (flowcell ID 1772-123-155), the cells not washed and in the second, they were washed (ID 1772-123-158).

The data deposited here is a sequencing run (Illumina MiSeq) of these ATAC-seq libraries. The metadata indicating the contents of each well is being uploaded separately and this record will be updated once the DOIs are available.
DOI: 10.5281/zenodo.54568
title: A Series Of Pathological Macromolecular Crystallography Datasets With Twinning And Other Lattice Disorders

description: These 11 datasets were collected at the Diamond Light Source and belong to the same protein, NAL (N-acetyl neuraminic acid lyase), which crystallised in 4 different crystal forms from the same crystallisation conditions producing crystals with the same morphology. The file names, where applicable (10/11 cases), contain the corresponding PDB deposition code.
DOI: 10.5281/zenodo.61685
title: Annotation Guideline Of Lre Corpus

description: 本文書は、場所参照表現タグ付きコーパスのアノテーションのためのガイドラインです。一部、作業手順書的な内容を含んでいます。
DOI: 10.5281/zenodo.61723
title: Borrelia Burgdorferi Ospc Mixes

description: In silico mixes of ospC reads.  Reads either contain Illumina errors (labeled error) or are errorFree (errFree).  ospC genotype is followed by mixture proportion (BA.02.98_errFree_R1.fq contains 2% ospC type B and 98% ospC type A reads).   All mixture files contain 300 reads; I redid sampling so there should be no sampling error.

Use tar -jxvf mix.tar.bz2 to extract the file archive.
DOI: 10.5281/zenodo.911515
title: Ab3P

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.911516
title: Ab3P

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.13012/b2idb-1616387_v1
title: Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

description: Datasets used in the study, "OCTAL: Optimal Completion of Gene Trees in Polynomial Time," under review at Algorithms for Molecular Biology. Note: DS_STORE file in 25gen-10M folder can be disregarded.
DOI: 10.5281/zenodo.236878
title: Floodx Datasets

description: This package supplements the following paper submitted to ESSD: http://www.earth-syst-sci-data-discuss.net/essd-2017-7/essd-2017-7.pdf

This package contains all collected data that is available in a text format, as well as useful code. The following subfolders are containted within "floodX Datasets":


	 <strong>metadata</strong>: Contains metadata for the various sensors, data source files, flooding experiments and image files for optical character recognition.
	<strong>data_raw</strong>: Contains the raw text format data, organized by sensor.
	<strong>code</strong>: Contains processing code for making the raw data more usable. The code is maintained in the following github repository: https://github.com/eawag-sww/floodx_data_preprocessing.git
	<strong>data_ocr_result</strong>: Contains data read from sensor display images using the processing code.
	<strong>data_preprocessed</strong>: Contains a version of the preprocessed code.
DOI: 10.5281/zenodo.266290
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.61758
title: A Simple Global River Bankfull Width And Depth Database

description: A simple global database of river widths and depths was derived using the HydroSHEDS river topology data set and simple geomorphic relationships among area, discharge, width, and depth. This database can be useful to provide initial estimates for hydraulic or hydrologic modeling where other suitable measurements are unavailable. The purpose of this database is not to replace more detailed estimates of river width and depth, but it is a first attempt at mapping these river characteristics with near-global coverage.
DOI: 10.5281/zenodo.61807
title: Graphannis Benchmark Queries And Results

description: Queries used in the benchmark are included in the file "queries_graphannis_benchmark.zip". Each folder corresponds to one corpus. Each query has an ".aql" file containing the AQL query, a ".json" file with the parsed query.

The actual results of the benchmark are in the "journal-2016-07-27.csv " file. Additional the memory usage for each corpus in graphANNIS is given in "memoryusage.csv".
DOI: 10.5281/zenodo.61819
title: Unstructured Meshes For Extrusion Article

description: Unstructured meshes for extrusion article.
DOI: 10.6084/m9.figshare.4060170.v1
title: Word frequency list for "A Hadoop-powered book recommendation system"

description: Word frequency list for the "A Hadoop-powered book recommendation system" experiment on the "Run My Experiment on GENI" blog%3A https%3A//witestlab.poly.edu/blog/a-hadoop-powered-book-recommendation-system/<br>We generated a word frequency list from the entire Project Gutenberg corpus (a one-time step that makes subsequent queries much faster). We downloaded all of the available Project Gutenberg books over a period of a couple of days, storing them on a GENI VM. Once we had the books (~36,000 books at 17GB), we created a word frequency list (~ 3.6GB), where every line contained a stemmed word, a particular book ID, the total number of words in that book, and the number of times the stemmed word appeared.
DOI: 10.6084/m9.figshare.7140209.v1
title: Urban link travel speed dataset from a megacity road network

description: Link travel speeds in
road networks are fundamental data in many research areas of traffic,
transportation, and logistics. To support
the research in these areas, we develop a dataset, containing the travel speeds
on each link and in different time periods together with the real road network
map. The dataset is collected from a representative megacity in Western China,
Chengdu. The road network of this city involves different urban road network
structures. The dataset shows the realistic variations and randomness of urban link
travel speeds. This enables the research of real data-driven decision-making
problems in traffic, transportation and logistics areas.
DOI: 10.13012/b2idb-0064468_v2
title: List of Chinese Students Receiving a Ph.D. in Chemistry between 1905 and 1964

description: List of Chinese Students Receiving a Ph.D. in Chemistry between 1905 and 1964.  Based on two books compiling doctoral dissertations by Chinese students in the United States.  Includes disciplines; university; advisor; year degree awarded, birth and/or death date, dissertation title.  Accompanies Chapter 5 :  History of the Modern Chemistry Doctoral Program in Mainland China by Vera V. Mainz published in "Igniting the Chemical Ring of Fire :  Historical Evolution of the Chemical Communities in the Countries of the Pacific Rim", Seth Rasmussen, Editor. Published by World Scientific. Expected publication 2017.
DOI: 10.22021/bbldntz201701
title: The Linked Open British National Bibliography – Books. 1950/2017-01 – N-Triples
DOI: 10.22021/bbldrdfz201701
title: The Linked Open British National Bibliography – Books. 1950/2017-01 – RDF/XML
DOI: 10.22021/bsldntz201701
title: The Linked Open British National Bibliography – Serials. 1950/2017-01 – N-Triples
DOI: 10.22021/bsldrdfz201701
title: The Linked Open British National Bibliography – Serials. 1950/2017-01 – RDF/XML
DOI: 10.5281/zenodo.268334
title: Aligned Isni And Ringgold Identifiers For Institutions

description: <strong>WARNING: This dataset contains errors - please refer to the new version instead.</strong>

This dataset provides a correspondence between ISNI and Ringgold identifiers, by combining two datasets:


	Open ISNI for Institutions, available at http://isni.ringgold.com/ , which provides metadata for institutions identified by ISNI.
	The dataset of institutions used by ORCID for disambiguation, which also comes from Ringgold, but exposes Ringgold ids.


The alignment between the two datasets was performed by exact matching on tuples of (name,city,region,country). This very conservative matching succeeds for about 75% of the 400 000 institutions covered: this high matching rate can be explained by the fact that both datasets come from the same database. The matching does not always succeed, probably because version differences between the two datasets.

<strong>Structure of the dataset</strong>


	ringgold_metadata_from_orcid.json provides one JSON payload per line, each representing a disambiguated institutition from ORCID, with its Ringgold identifier
	aligned_ringgold_and_isni.tsv provides the aligned dataset, containing all ISNI records and all matching Ringgold records. The Ringgold records that were not matched are not included in this file.


<strong>License</strong>

Quoting Ringgold: "The use of the ISNI data contained herein is completely open and you may utilise and share the ISNI identifiers as you see fit."

Quoting ORCID: "Per our agreement with Ringgold, we are allowed to share the Ringgold identifiers and limited metadata (organization name, location) under CC0 license, just as the rest of ORCID data are available. We would not be using Ringgold otherwise. If someone gets a Ringgold ID out of ORCID, they are free to use it."
DOI: 10.5281/zenodo.61878
title: Momadirectorsdepartmentheads

description: Dataset of the chronology of Museum Directors and Department Heads
DOI: 10.5281/zenodo.61881
title: 場所参照表現タグ付きコーパス

description: 場所参照表現タグ付きコーパスのアノテーションガイドラインを含めたアーカイブです。
DOI: 10.5281/zenodo.61977
title: 1,825 Oryza Chloroplast Genomes

description: 1,825 complete or near-complete chloroplast genomes of Oryza species.

Reconstruction based on previously published data (PRJEB2829; PRJEB2578; PRJEB2052; PRJEB6180).

Includes O. rufipogon, O. sativa (temperate japonica, tropical japonica, indica, aus, aromatic).

Reference: Civan P, Brown T. Genetic origins of cultivated rice (<em>Oryza sativa</em> L.) and the role of gene flow during its domestication. <em>In preparation.</em>
DOI: 10.5281/zenodo.61739
title: Library Of Simulated Root Images

description: This depository contains the images and associated RSML files used in the paper entitled "Using a structural root system model for an in-depth assessment of root image analysis pipeline" from the same authors.

 

It contains: 

- 10.000 simulated root images;

- 10.000 corresponding RSML files;

- .csv files containing the ground-truth data for each modelled root system;

- .csv files containing the image descriptors extracted using RIA-J;

- .tps files containing the shape descriptors data.

 

The codes used with this data is available here: https://zenodo.org/record/62063
DOI: 10.5281/zenodo.803283
title: Actionable Information During A Disaster (Self-Organize Relief Efforts Via #Porteouverte)

description: <strong>Abstract</strong> (our paper)

Web-based social and communication technologies enable citizens to self-organize relief efforts in response to crises. This work focuses on a question fundamental to the concept of collective intelligence: how effective are such self-organized channels, ungoverned by any central authority, in conforming to their intended function? In this study we examine the hashtag #PorteOuverte ("#OpenDoor") introduced during the 2015 Paris terrorist attacks, as an "improvised logistical channel" (ILC) to help individuals to find a safe shelter near the attack sites. We analyze the dynamics and effectiveness of #PorteOuverte by comparing its proportion of relevant logistical messages -- individuals requesting or offering shelter -- to other messages such as those offering emotional consolation or commenting on the hashtag itself.  Our results reveal that the vast majority of messages are not relevant, however the crowd senses and spreads relevant messages more than others.  We further demonstrate that relevant messages can be automatically detected and thus algorithmic promotion may be possible.

<strong>Data</strong>

The #PorteOuverte hashtag ("opendoor" in English), created right after the 2015 terrorist attacks in Paris, was used by individuals to offer shelter to strangers stranded by the attacks and by individuals in need of shelter to request help and post their whereabouts. The file #PorteOuverte _tweet_ids.txt contains all the original tweet ids that used this hashtag.

The first tweet was posted on Friday, 13 Nov 2015 21:34:06 GMT.

Duration: 2015-11-13 to 2015-11-16 (retweets not included).

Total number of tweets: 75547

<strong>Publication</strong>

This data set was created for our study. If you make use of this data set, please cite:

He, X., Lu, D., Margolin, D., Wang, M., Idrissi, S., Lin, Y.-R. (2017). "The Signals and Noise: Actionable Information in Improvised Social Media Channels During a Disaster," Proceedings of Web Science 2017 (WebSci 2017), 2017. doi:10.1145/3091478.3091501
DOI: 10.5281/zenodo.803284
title: Actionable Information During A Disaster (Self-Organize Relief Efforts Via #Porteouverte)

description: <strong>Abstract</strong> (our paper)

Web-based social and communication technologies enable citizens to self-organize relief efforts in response to crises. This work focuses on a question fundamental to the concept of collective intelligence: how effective are such self-organized channels, ungoverned by any central authority, in conforming to their intended function? In this study we examine the hashtag #PorteOuverte ("#OpenDoor") introduced during the 2015 Paris terrorist attacks, as an "improvised logistical channel" (ILC) to help individuals to find a safe shelter near the attack sites. We analyze the dynamics and effectiveness of #PorteOuverte by comparing its proportion of relevant logistical messages -- individuals requesting or offering shelter -- to other messages such as those offering emotional consolation or commenting on the hashtag itself.  Our results reveal that the vast majority of messages are not relevant, however the crowd senses and spreads relevant messages more than others.  We further demonstrate that relevant messages can be automatically detected and thus algorithmic promotion may be possible.

<strong>Data</strong>

The #PorteOuverte hashtag ("opendoor" in English), created right after the 2015 terrorist attacks in Paris, was used by individuals to offer shelter to strangers stranded by the attacks and by individuals in need of shelter to request help and post their whereabouts. The file #PorteOuverte _tweet_ids.txt contains all the original tweet ids that used this hashtag.

The first tweet was posted on Friday, 13 Nov 2015 21:34:06 GMT.

Duration: 2015-11-13 to 2015-11-16 (retweets not included).

Total number of tweets: 75547

<strong>Publication</strong>

This data set was created for our study. If you make use of this data set, please cite:

He, X., Lu, D., Margolin, D., Wang, M., Idrissi, S., Lin, Y.-R. (2017). "The Signals and Noise: Actionable Information in Improvised Social Media Channels During a Disaster," Proceedings of Web Science 2017 (WebSci 2017), 2017. doi:10.1145/3091478.3091501
DOI: 10.5281/zenodo.996888
title: Test-Retest Qt-Dmri Datasets For "Non-Parametric Graphnet-Regularized Representation Of Dmri In Space And Time"

description: We release these four diffusion MRI data sets as part of our recent journal publication; Fick, Rutger H.J., et al. "Non-Parametric GraphNet-Regularized Representation of dMRI in Space and Time." <em>Medical Image Analysis</em> (2017). More detailed information about the use of these data sets can also be found in the publication.

We acquired test-retest diffusion MRI spin echo sequences from two C57Bl6 wild-type mice on an 11.7 Tesla Bruker scanner. The test and retest acquisition were taken 48 hours from each other. The data consists of 80x160x5 voxels of size 110x110x500\(\mu\)m. Each data set consists of 515 Diffusion-Weighted Images (DWIs) spread over 35 acquisition shells. The shells are spread over 7 gradient strength shells with a maximum gradient strength of 491 mT/m, 5 pulse separation shells between [10.8 - 20.0]ms, and a pulse length of 5ms. We manually created a brain mask and corrected the data from eddy currents and motion artifacts using FSL's eddy. We then drew a region of interest in the middle slice in the corpus callosum, where the tissue is reasonably coherent.

- The diffusion MRI data are contained in the files with 'dwis' in the name.<br>
<br>
- The corpus callosum masks are contained in the files with 'mask' in the name.

- The acquisition parameters are contained in the .txt files.
description: This work was partly supported by ANR ``MOSIFAH" under ANR-13-MONU-0009-01, the ERC under the European Union's Horizon 2020 research and innovation program (ERC Advanced Grant agreement No 694665:CoBCoM), MAXIMS grant funded by ICM's The Big Brain Theory Program and ANR-10-IAIHU-06.
description: {"references": ["Fick, R.H., Petiet, A., Santin, M., Philippe, A.C., Lehericy, S., Deriche, R. and Wassermann, D., 2017. Non-Parametric GraphNet-Regularized Representation of dMRI in Space and Time. Medical Image Analysis."]}