cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5188624.v1
title: The structural insights of 16.3 kDa heat shock protein (HSP16.3) from <i>Mycobacterium tuberculosis</i> via <i>in silico</i> study

description: <i>Mycobacterium tuberculosis</i> (Mtb) is capable of surviving in dormancy before developing to tuberculosis (TB). One of the major challenges of TB management is the identification of patients, making TB diagnosis critical for disease management. This study focuses on the 16 kDa heat shock protein (HSP16.3; a potential biomarker for latent TB infection) that is expressed during the latent phase of Mtb growth. In order to explore the dynamics and interactions of HSP16.3, the 3-D structure of HSP16.3 was built via comparative modelling. The predicted structure shows a predominantly beta-sheet dodecamer with alpha-helical folds at its N-terminal. A known protein-hydrophobic probe (1,1′-Bi(4-anilino)naphthalene-5,5′-disulfonic acid; bisANS) was docked to the HSP16.3 model. Interacting residues predicted from docking and MD simulations are in good accordance with experimental data reported in the literature. MMPBSA calculation from MD simulation also showed favourable binding free energy of −29.90 kcal/mol, driven mainly by van der waals and non-polar solvation energies. The statistical evaluation and results from the computational study on HSP16.3 indicate the reliability of the built model, which is potentially useful for further structural studies of HSP16.3 for latent TB diagnostics.
DOI: 10.6084/m9.figshare.5188630.v2
title: Subpixel land-cover classification for improved urban area estimates using Landsat

description: Urban areas are Earth’s fastest growing land use that impact hydrological and ecological systems and the surface energy balance. The identification and extraction of accurate spatial information relating to urban areas is essential for future sustainable city planning owing to its importance within global environmental change and human–environment interactions. However, monitoring urban expansion using medium resolution (30–250 m) imagery remains challenging due to the variety of surface materials that contribute to measured reflectance resulting in spectrally mixed pixels. This research integrates high spatial resolution orthophotos and Landsat imagery to identify differences across a range of diverse urban subsets within the rapidly expanding Perth Metropolitan Region (PMR), Western Australia. Results indicate that calibrating Landsat-derived subpixel land-cover estimates with correction values (calculated from spatially explicit comparisons of subpixel Landsat values to classified high-resolution data which accounts for over [under] estimations of Landsat) reduces moderate resolution urban area over (under) estimates by on an average 55.08% for the PMR. This approach can be applied to other urban areas globally through use of frequently available and/or low-cost high spatial resolution imagery (e.g. using Google Earth). This will improve urban growth estimations to help monitor and measure change whilst providing metrics to facilitate sustainable urban development targets within cities around the world.
DOI: 10.6084/m9.figshare.5188549
title: Switching to the single-tablet regimen of elvitegravir, cobicistat, emtricitabine, and tenofovir DF from non-nucleoside reverse transcriptase inhibitor plus coformulated emtricitabine and tenofovir DF regimens: Week 96 results of STRATEGY-NNRTI

description: <b>Background:</b> HIV-1-infected, virologically suppressed adults wanting to simplify or change their non-nucleoside reverse transcriptase inhibitor (NNRTI)-based regimens may benefit from switching to the single-tablet regimen of elvitegravir, cobicistat, emtricitabine, and tenofovir disoproxil fumarate (E/C/F/TDF). <b>Objective:</b> We examined differences in the proportion of participants with HIV-1 RNA <b>Methods:</b> STRATEGY-NNRTI was a 96-week, phase 3b, randomized, open-label, study examining the efficacy, safety, and tolerability of switching to E/C/F/TDF in virologically suppressed individuals (HIV-1 RNA <b>Results:</b> At Week 96, 87% (251/290) of switch and 80% (115/143) of no-switch participants maintained HIV-1 RNA p = 0.12) according to the FDA-defined snapshot algorithm. Both groups had similar proportions of subjects with virologic failure (2.8% switch, 1.4% no-switch). Discontinuations resulting from adverse events were infrequent (3% [9/291] switch, 2% [3/143] no-switch). Three switch participants (1%) discontinued due to renal adverse events (2 of the 3 before Week 48). Switch participants reported significant improvements in neuropsychiatric symptoms by as early as Week 4, and which were maintained through Week 96. <b>Conclusions:</b> E/C/F/TDF is safe and effective and reduces NNRTI-associated neuropsychiatric symptoms for virologically suppressed HIV-positive adults switching from an NNRTI plus FTC/TDF-based regimen.
DOI: 10.6084/m9.figshare.5188549.v1
title: Switching to the single-tablet regimen of elvitegravir, cobicistat, emtricitabine, and tenofovir DF from non-nucleoside reverse transcriptase inhibitor plus coformulated emtricitabine and tenofovir DF regimens: Week 96 results of STRATEGY-NNRTI

description: <b>Background:</b> HIV-1-infected, virologically suppressed adults wanting to simplify or change their non-nucleoside reverse transcriptase inhibitor (NNRTI)-based regimens may benefit from switching to the single-tablet regimen of elvitegravir, cobicistat, emtricitabine, and tenofovir disoproxil fumarate (E/C/F/TDF). <b>Objective:</b> We examined differences in the proportion of participants with HIV-1 RNA <b>Methods:</b> STRATEGY-NNRTI was a 96-week, phase 3b, randomized, open-label, study examining the efficacy, safety, and tolerability of switching to E/C/F/TDF in virologically suppressed individuals (HIV-1 RNA <b>Results:</b> At Week 96, 87% (251/290) of switch and 80% (115/143) of no-switch participants maintained HIV-1 RNA p = 0.12) according to the FDA-defined snapshot algorithm. Both groups had similar proportions of subjects with virologic failure (2.8% switch, 1.4% no-switch). Discontinuations resulting from adverse events were infrequent (3% [9/291] switch, 2% [3/143] no-switch). Three switch participants (1%) discontinued due to renal adverse events (2 of the 3 before Week 48). Switch participants reported significant improvements in neuropsychiatric symptoms by as early as Week 4, and which were maintained through Week 96. <b>Conclusions:</b> E/C/F/TDF is safe and effective and reduces NNRTI-associated neuropsychiatric symptoms for virologically suppressed HIV-positive adults switching from an NNRTI plus FTC/TDF-based regimen.
DOI: 10.6084/m9.figshare.5188462
title: Wikipedia_articles_controversy_classification_results.csv

description: CSV table contains results of classification of 4.6 M English Wikipedia articles as not controversial (0) or controversial (1).
DOI: 10.6084/m9.figshare.5188405
title: Does anchoring of the vaginal mesh increase stress incontinence correction potential

description: TVM and mTVM datasets with POP Q system
DOI: 10.6084/m9.figshare.5188462.v1
title: Wikipedia_articles_controversy_classification_results.csv

description: CSV table contains results of classification of 4.6 M English Wikipedia articles as not controversial (0) or controversial (1).
DOI: 10.6084/m9.figshare.5188393
title: PDES test data set

description: A data set created of a complex multi-layer circuit board specifically for testing software interfaces. The data set is not complete and may have syntax errors.
DOI: 10.6084/m9.figshare.5188396
title: Mantle source heterogeneity in continental mafic Large Igneous Provinces: insights from the Panjal, Rajmahal and Deccan basalts, India

description: References for the geochemical data, extracted from the GEOROC database, on the basaltic rocks from Panjal, Rajmahal and Deccan Large Igneous Provinces.
DOI: 10.6084/m9.figshare.5188405.v1
title: Does anchoring of the vaginal mesh increase stress incontinence correction potential

description: TVM and mTVM datasets with POP Q system
DOI: 10.6084/m9.figshare.5188396.v1
title: Mantle source heterogeneity in continental mafic Large Igneous Provinces: insights from the Panjal, Rajmahal and Deccan basalts, India

description: References for the geochemical data, extracted from the GEOROC database, on the basaltic rocks from Panjal, Rajmahal and Deccan Large Igneous Provinces.
DOI: 10.6084/m9.figshare.5188387
title: YouTube science channels word frequency comparisons for male vs female comment authors and comment targets

description: YouTube science channels word frequency comparisons for male vs female comment authors and comment targets. Spreadsheet used in the paper: YouTube Science Channel Video Presenters and Comments: Female Friendly or Vestiges of Sexism?
DOI: 10.6084/m9.figshare.5188393.v1
title: PDES test data set

description: A data set created of a complex multi-layer circuit board specifically for testing software interfaces. The data set is not complete and may have syntax errors.
DOI: 10.6084/m9.figshare.5188387.v1
title: YouTube science channels word frequency comparisons for male vs female comment authors and comment targets

description: YouTube science channels word frequency comparisons for male vs female comment authors and comment targets. Spreadsheet used in the paper: YouTube Science Channel Video Presenters and Comments: Female Friendly or Vestiges of Sexism?
DOI: 10.6084/m9.figshare.5188357
title: Metabolite BridgeDb ID Mapping Database (20170709)

description: BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.
DOI: 10.6084/m9.figshare.5188360
title: Elevator Annotator - Experiment Results

description: Experiment Data for Elevator Annotator
DOI: 10.6084/m9.figshare.5188357.v1
title: Metabolite BridgeDb ID Mapping Database (20170709)

description: BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.
DOI: 10.6084/m9.figshare.5188360.v1
title: Elevator Annotator - Experiment Results

description: Experiment Data for Elevator Annotator
DOI: 10.6084/m9.figshare.5188315
title: Prisoners have a right to information.

description: The ALIA Minimum Standard Guidelines for Library Services to Prisoners in 2015 states that everybody has the right to read, learn and access information, including prisoners. Prison libraries and librarians are essential to achieving this. Information professionals are ideally placed to advocate for this and to endeavour to close the information divide for an increasingly disadvantaged section of our community. In addition, to the information divide, prisoners are also becoming victims of the digital divide, with the use of the internet being banned for all prisoners in Australia and access to computers restricted to educational use only.<br>The prison population consists of a disproportionately high number of people with low literacy, indigenous Australians, people who have been abused as children and those suffering from mental illness. Studies have shown that crime and substance abuse is higher in those with low literacy and that recidivism (returning to prison) is reduced by educating prisoners.
DOI: 10.6084/m9.figshare.5188333.v1
title: Discovering Community Types in Open-Source: A Systematic Approach and Its Evaluation

description: The open-source phenomenon has reached considerable proportions to the point in which it is virtually impossible to nd large applications that do not rely on open-source components. However, such grand adoption may turn into a risk if the community and organisational aspects driving open-source work (e.g., contribution policy or release schemes) are left implicit and untracked. We advocate the explicit study and automated support of such aspects and propose Yoshi (Yielding Open-Source Health Information), a tool able to map open-source communities onto known organisational and social structure types (e.g., Formal Communities characterized by a very formal community organisation). This mapping is bene cial since it allows (a) further investigation of community health using metrics from organisations research, (b) reuse of type-speci c best-practices from the same literature, and (c) diagnosis of organisational anti-patterns. We evaluated the tool in an empirical study involving 25 open-source communities hosted on GitHub. We evaluate (i) whether the metrics computed by Yoshi represent valid measures to characterise software communities, (ii) the extent to which the tool is able to correctly estimate the structure of a community, (iii) whether community smells (i.e., socio-technical anti-patterns) can be diagnosed using Yoshi’s typi cation, and (iv) whether such typi cation can help in understanding the health status of the repository. We conclude that the tool o ers a valuable basis to monitor key community traits behind open-source. We made the proposed tool publicly available and open-source.
DOI: 10.6084/m9.figshare.5188264
title: Script

description: Script used for the article<br><br>Updated on the 2018.02.16 after correction of a small mistake that does not change the results<br>
DOI: 10.6084/m9.figshare.5188261
title: Dataset

description: Dataset with the acoustic and sequential data<br>
DOI: 10.6084/m9.figshare.5188264.v2
title: Script

description: Script used for the article<br><br>Updated on the 2018.02.16 after correction of a small mistake that does not change the results<br>
DOI: 10.6084/m9.figshare.5188273.v1
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)Large files waiting to upload -- PRIMARY contigs by province and sample
DOI: 10.6084/m9.figshare.5188273.v2
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sample
DOI: 10.6084/m9.figshare.5188273
title: The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188273.v5
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188273.v6
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188273.v7
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188120
title: Sundin et al. 2017 Behav Ecol Suppl data

description: Raw data to reproduce analyses in the paper: No effect of elevated carbon dioxide on reproductive behaviors in the three-spined stickleback
DOI: 10.6084/m9.figshare.5188117
title: Soil acidification in broadleaved forest soils

description: soil pH, anions, cations<br>
DOI: 10.6084/m9.figshare.5188120.v1
title: Sundin et al. 2017 Behav Ecol Suppl data

description: Raw data to reproduce analyses in the paper: No effect of elevated carbon dioxide on reproductive behaviors in the three-spined stickleback
DOI: 10.6084/m9.figshare.5188117.v1
title: Soil acidification in broadleaved forest soils

description: soil pH, anions, cations<br>
DOI: 10.6084/m9.figshare.5188273.v8
title: The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188057
title: Library journals ranking 2017

description: This table lists 38 journals in library and archival sciences, regarding their H-index (as from Google Metrics) and italian evaluation agency ranking.It updates 2016 data, at Marchitelli, Andrea (2016): Library journals ranking. figshare.https://doi.org/10.6084/m9.figshare.3487001.v2
DOI: 10.6084/m9.figshare.5188063
title: Sample data MIxS format

description: Contextual data for the samples from the paper: Characterization of <i>Legionella</i> from watersheds in British Columbia, Canada
DOI: 10.6084/m9.figshare.5188057.v1
title: Library journals ranking 2017

description: This table lists 38 journals in library and archival sciences, regarding their H-index (as from Google Metrics) and italian evaluation agency ranking.It updates 2016 data, at Marchitelli, Andrea (2016): Library journals ranking. figshare.https://doi.org/10.6084/m9.figshare.3487001.v2
DOI: 10.6084/m9.figshare.5188030
title: Raw EEG data for 'Enhanced conflict monitoring via deep breathing'

description: Included here are the raw EEG signals and the behavioral data from the Go/NoGo task. The ERP was extracted using EEGLAB and ERPLAB using the included eventlist files.
DOI: 10.6084/m9.figshare.5188273.v9
title: The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files
DOI: 10.6084/m9.figshare.5188273.v10
title: The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

description: Data for 2,631 draft genomes (TOBG-GENOMES.tar.gz) generated using the Tara Oceans microbial metagenomic data sets - additionally includes:SECONDARY_CONTIGS.province.tar.gz -- SECONDARY contigs by provinceTOBG-READCOUNT.tar.gz -- read count values of each sample against SECONDARY contigsTOBG-BINS.tar.gz -- genome bins &lt;50% complete (15,557 bins with &gt;5 contigs)PRIMARY_CONTIGS.province.tar.gz -- PRIMARY contigs by province and sampleLarger files have been split - to restore the full tar ball, use cat to combine. E.G. cat PRIMARY_CONTIGS.MEDITERRANEAN0* &gt; PRIMARY_CONTIGS.MEDITERRANEAN.tar.gz cat And then decompressIndian Monsoon = 1 filesArabian Sea = 1 fileRed Sea = 1 fileMediterranean = 2 filesEast Africa Coastal = 2 filesChile-Peru Coastal = 2 filesNorth Pacific = 2 filesNorth Atlantic = 4 filesSouth Atlantic = 4 filesSouth Pacific = 7 files