cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fwx6y3
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Microtus guatemalensis Merriam, 1898"
 ]
}

 The dataset includes 127 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074228-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wi5bt3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agalychnis moreletii (Duméril, 1853)",
 "Geometry POLYGON((-95.87 17.80,-95.87 18.84,-94.15 18.84,-94.15 17.80,-95.87 17.80))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022556-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmc5ur
title: Occurrence Download

description: A dataset containing 41571 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Misopates orontium (L.) Raf."
 ]
}

 The dataset includes 41571 records from 639 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074235-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umqckh
title: Occurrence Download

description: A dataset containing 964180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur L."
 ]
}

 The dataset includes 964180 records from 1151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269205-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubu3k8
title: Occurrence Download

description: A dataset containing 5279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Crax rubra Linnaeus, 1758",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5279 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045833-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g97fdm
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antipathes dichotoma Pallas, 1766"
 ]
}

 The dataset includes 119 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195211-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sza5f3
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Leucocarbo ranfurlyi (Ogilvie-Grant, 1901)"
 ]
}

 The dataset includes 128 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012053-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbbckr
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cleistes unifoliata (C.Schweinf.) Carnevali & I.Ramírez"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149445-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxpcpb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noblella lochites (Lynch, 1976)"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195219-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytsek6
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cosmos steenisiae Veldkamp"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149446-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jl08t0
title: Occurrence Download

description: A dataset containing 615 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alphitobius diaperinus (Panzer, 1797)"
 ]
}

 The dataset includes 615 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045834-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7ry3m
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Salvadorina waigiuensis Rothschild & E.Hartert, 1894"
 ]
}

 The dataset includes 344 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005983-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uwv5r
title: Occurrence Download

description: A dataset containing 11593 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wolffia arrhiza (L.) Horkel ex Wimm."
 ]
}

 The dataset includes 11593 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226020-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt2rmn
title: Occurrence Download

description: A dataset containing 11961 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vegetation data from long term sheep grazing experiment in Setesdal, Norway"
 ]
}

 The dataset includes 11961 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045834-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmy32y
title: Occurrence Download

description: A dataset containing 1633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Museum of Comparative Zoology, Harvard University)",
 "GadmGid is USA.22_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Unionida"
 ]
}

 The dataset includes 1633 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010970-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8a2jzg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sepiella mangkangunga A.Reid & Lu, 1998"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237638-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p43m3l
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nauphoeta cinerea (Olivier, 1789)"
 ]
}

 The dataset includes 61 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045835-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2v7rb
title: Occurrence Download

description: A dataset containing 1223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus alatus L."
 ]
}

 The dataset includes 1223 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011014-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5c9ss4
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthella sprucei Hook.fil."
 ]
}

 The dataset includes 400 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045836-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndseus
title: Occurrence Download

description: A dataset containing 59303 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Procyonidae"
 ]
}

 The dataset includes 59303 records from 341 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243311-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27245061.v2
title: SHAP zero

description: These files contain data from the article "SHAP zero Explains All-order Feature Interactions in Black-box Genomic Models with Near-zero Query Cost" by Darin Tsui, Aryan Musharaf, and Amirali Aghazadeh. Files presented here contains all SHAP values and Shapley interactions found by SHAP zero, KernelSHAP, and SHAP-IQ from inDelphi and TIGER, using code from https://github.com/amirgroup-codes/shapzero/.<b>Description of files</b><b>TIGER_shapzero_values.csv:</b> All SHAP values found by SHAP zero from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position.<br><br><b>TIGER_kernelshap_values.csv:</b> All SHAP values found by KernelSHAP from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position.<br><br><b>TIGER_deepshap_values.csv:</b> All SHAP values found by DeepSHAP from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position.<br><br><b>TIGER_fastshap_values.csv:</b> All SHAP values found by FastSHAP from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position.<br><br><b>TIGER_shapzero_fsi.csv:</b> All Faith-Shap interactions found by SHAP zero from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Order 1 to 3</i>: Dictionary of all interactions of orders 1-5. The keys represent the nucleotide position (0-indexed) affected, and the values represent the Faith-Shap interaction at those nucleotides. For example, the key:value pairing {(0,1,2):0.1} and the sequence TCA, means that the first (T), second (C), and third (A) nucleotides are interacting with a Faith-Shap interaction value of 0.1.<br><br><b>TIGER_shapiq_fsi.csv:</b> All Faith-Shap interactions found by SHAP-IQ from TIGER.<br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Order 1 to 2</i>: Dictionary of all interactions of orders 1-2. The keys represent the nucleotide position (0-indexed) affected, and the values represent the Faith-Shap interaction at those nucleotides.<br>Order 3 part 1 to 6: Since SHAP-IQ produced too many 3rd-order interactions for Excel to handle in a single column, the 3rd orders are split across 6 columns.<br><br>
DOI: 10.15468/dl.d7rpvm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Allogalumna subaequalis Mihelcic, 1956",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022177-241007104925546/datasets/export for details.
DOI: 10.5281/zenodo.10519472
title: Data and Software for: 'The Radius of the High-mass Pulsar PSR J0740+6620 with 3.6 yr of NICER Data'

description: Posterior sample files associated with the publication "The Radius of the High-mass Pulsar PSR J0740+6620 with 3.6 yr of NICER Data" by Salmi et al. (2024; arXiv.2406.14466; https://doi.org/10.3847/1538-4357/ad5f1f).

Also included are: the data products; the numeric model files including the telescope calibration products; model modules in the Python language using the X-PSI framework; and Jupyter analysis notebooks.

Please refer to the README for detailed information.
DOI: 10.5281/zenodo.10519473
title: Data and Software for: 'The Radius of the High-mass Pulsar PSR J0740+6620 with 3.6 yr of NICER Data'

description: Posterior sample files associated with the publication "The Radius of the High-mass Pulsar PSR J0740+6620 with 3.6 yr of NICER Data" by Salmi et al. (2024; arXiv.2406.14466; https://doi.org/10.3847/1538-4357/ad5f1f).

Also included are: the data products; the numeric model files including the telescope calibration products; model modules in the Python language using the X-PSI framework; and Jupyter analysis notebooks.

Please refer to the README for detailed information.
DOI: 10.15468/dl.d733tg
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amerobelba decedens Berlese, 1908",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022179-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13952786
title: Data for "A neural correlate of learning fails to predict foraging efficiency in the bumble bee Bombus terrestris"

description: This file contain the foraging and synaptic density data collected in the summer of 2019 by Pasquier, Pull, Ott and Leadbeater. Used in the paper titled "A neural correlate of learning fails to predict foraging efficiency in the bumble bee Bombus terrestris".
DOI: 10.5281/zenodo.13952787
title: Data for "A neural correlate of learning fails to predict foraging efficiency in the bumble bee Bombus terrestris"

description: This file contain the foraging and synaptic density data collected in the summer of 2019 by Pasquier, Pull, Ott and Leadbeater. Used in the paper titled "A neural correlate of learning fails to predict foraging efficiency in the bumble bee Bombus terrestris".
DOI: 10.15468/dl.fapk7s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Arthrodamaeus mediterraneus Subías, Arillo & J.Subías, 1997",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022180-241007104925546/datasets/export for details.
DOI: 10.15468/dl.ucs622
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telmatobius ceiorum Laurent, 1970"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022182-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgvjkg
title: Occurrence Download

description: A dataset containing 18144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalopholis argus Schneider, 1801",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18144 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022181-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13889762
title: Soil and understory CO2 respiration, CH4, and N2O fluxes, tree biomass and litter, and soil carbon stock after a long-term N fertilization of a Scots pine forest in Finland

description: Data of forest soil respiration, soil and undestory respiration, CH4, and N2O fluxes, soil temperature and volumetric water content (Data_Karstula_GHG_temp.swc.csv), continuous soil temperature and moisture data (Data_Karstula_measured_temperature_2021_2023.csv, Data_Karstula_measured_moisture_2021_2023.csv), forest biomass and litter (Data_Karstula_total_biomass_litter.csv, Data_Karstula_measured_litter_2021_2023.csv), and soil C stocks (Data_Karstula_soc.csv) from the boreal Scots pine forest site Karstula after a long-term N fertilization in Finland (62°54'43.343"N; 24°34'16.021"E).

The dataset is used for the publication "Tupek et al. : Lower sensitivity of microbial respiration to soil moisture after long-term N fertilization increases soil carbon retention in a Scots pine forest. 2024".
DOI: 10.5281/zenodo.13889763
title: Soil and understory CO2 respiration, CH4, and N2O fluxes, tree biomass and litter, and soil carbon stock after a long-term N fertilization of a Scots pine forest in Finland

description: Data of forest soil respiration, soil and undestory respiration, CH4, and N2O fluxes, soil temperature and volumetric water content (Data_Karstula_GHG_temp.swc.csv), forest biomass and litter (Data_Karstula_total_biomass_litter.csv, Data_Karstula_measured_litter_2021_2023.csv), and soil C stocks (Data_Karstula_soc.csv) from the boreal Scots pine forest site Karstula after a long-term N fertilization in Finland (62°54'43.343"N; 24°34'16.021"E).

The dataset is used for the publication "Tupek et al. : Lower sensitivity of microbial respiration to soil moisture after long-term N fertilization increases soil carbon retention in a Scots pine forest. 2024".
DOI: 10.5281/zenodo.13952779
title: Soil and understory CO2 respiration, CH4, and N2O fluxes, tree biomass and litter, and soil carbon stock after a long-term N fertilization of a Scots pine forest in Finland

description: Data of forest soil respiration, soil and undestory respiration, CH4, and N2O fluxes, soil temperature and volumetric water content (Data_Karstula_GHG_temp.swc.csv), continuous soil temperature and moisture data (Data_Karstula_measured_temperature_2021_2023.csv, Data_Karstula_measured_moisture_2021_2023.csv), forest biomass and litter (Data_Karstula_total_biomass_litter.csv, Data_Karstula_measured_litter_2021_2023.csv), and soil C stocks (Data_Karstula_soc.csv) from the boreal Scots pine forest site Karstula after a long-term N fertilization in Finland (62°54'43.343"N; 24°34'16.021"E).

The dataset is used for the publication "Tupek et al. : Lower sensitivity of microbial respiration to soil moisture after long-term N fertilization increases soil carbon retention in a Scots pine forest. 2024".
DOI: 10.15468/dl.xjpmcp
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Atropacarus wandae (Niedbala, 1981)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022183-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13952818
title: Agricultural production in the years 2003, 2020, and 2023 in the Cuitzeo Basin
DOI: 10.5281/zenodo.13952819
title: Agricultural production in the years 2003, 2020, and 2023 in the Cuitzeo Basin