cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0736pm8
title: CIL:11812, Danio rerio, yolk syncytial layer cell. In Cell Image Library

description: Timelapse shows yolk syncytial layer (YSL) nuclear migration on the ventral side during gastrulation. Divergence of YSL nuclei away from ventral midline can be seen. As epiboly ends and blastopore closure takes place, marginal band nuclei finally disperse under the blastoderm. Video made available by Mark Cooper through Zebrafish - The Living Laboratory.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: compartmentalization of stain or label
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.15468/dl.7bafsd
title: Occurrence Download

description: A dataset containing 2353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Pl@ntNet automatically identified occurrences",
 "TaxonKey is Tradescantia pallida"
 ]
}

 The dataset includes 2353 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009515-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5291/ill-data.test-3492
title: test of sample
DOI: 10.6075/j0dn43rb
title: CIL:11801, Danio rerio, yolk syncytial layer cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: compartmentalization of stain or label
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Timelapse of dorsal yolk syncytial layer (YSL) nuclear movements during zebrafish gastrulation. A marginal band of YSL nuclei undergo epiboly toward the vegetal pole while internal-YSL (I-YSL) nuclei move away from the margin and toward the animal pole. Starting about mid-gastrulation (70% epiboly), YSL nuclei begin converging toward the dorsal midline and extending along the anteior/posterior axis. Video made available by Mark Cooper through Zebrafish - The Living Laboratory.
DOI: 10.6075/j0p55m7v
title: CIL:11826, Danio rerio, yolk cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy; single-spot confocal microscopy
Parameter imaged: optical path length gradient; fluorescence emission
Source of contrast: boundaries between regions with different refractive index; differences in adsorption or binding of stain
Visualization methods: SYTOX Green
Processing history: unprocessed raw data
Data qualification: Raw;intensitiesquantitation
description: Visualization of yolk syncytial layer (YSL) nuclei in living zebrafish embryos. Sytox Green, a membrane-impermiant vital nuclear stain, was injected into the yold cell of late blastula (sphere stage) embryos. At 36 hrs of development, the zebrafish yolk cell displays a prominent anterior-posterior (A, P) axis, with brightly displayed fluorescent nuclei distributed through its entire cortex.
DOI: 10.6075/j0p55mrk
title: CIL:1184, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.5291/ill-data.test-3497
title: Monochrome VCN SANS with Latex samples
DOI: 10.6075/j0w094pj
title: CIL:11822, Danio rerio, yolk syncytial layer cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: compartmentalization of stain or label
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Yolk syncytial layer cell nuclei exhibit convergence and extension behaviors during late gastrulation. Video made available by Mark Cooper through Zebrafish - The Living Laboratory.
DOI: 10.6075/j01j98hq
title: CIL:11814, Danio rerio, yolk syncytial layer cell. In Cell Image Library

description: Epiboly movements of yolk syncytial layer (YSL) nuclei during gastrulation from a dorsal-vegetal pole view. A marginal band of nuclei moves toward the vegetal pole during epiboly, while some nuclei move out of the marginal zone to populate the I-YSL under the blastoderm. Video made available by Mark Cooper through Zebrafish - The Living Laboratory.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: compartmentalization of stain or label
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0b856wb
title: CIL:11803, Danio rerio, yolk cell. In Cell Image Library

description: Timelapse of dorsal yolk syncytial layer (YSL) nuclei and blastoderm morphogenesis from sphere stage (late blastula) to 1 somite stage. Top panel shows Nomarski movie of blastoderm morphogenesis including epiboly, gastrulation, convergence and extension, and notocord formation. Bottom panel show a confocal projection view of YSL nuclear movements including nuclear divisions, epiboly movements, and convergence and extension. Notice how some YSL nuclei that are located at the dorsal margin extend along the entire dorsal axis. Sphere is approximately 700 microns in diameter. Video made available through Mark Cooper and Zebrafish The Living Laboratory.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: single-spot confocal microscopy; differential interference contrast microscopy
Parameter imaged: optical path length gradient; fluorescence emission
Source of contrast: boundaries between regions with different refractive index; differences in adsorption or binding of stain
Processing history: maximum projection
Data qualification: Raw
DOI: 10.6075/j06h4gn9
title: CIL:1172, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
DOI: 10.6075/j0pg1r1d
title: CIL:1175, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.6075/j0k64hb0
title: CIL:1171, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.6075/j0qv3k9s
title: CIL:11832, Arbacia, oocyte. In Cell Image Library

description: Preparation: tissue in plastic embedment; osmium tetroxide fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM); detection of electrons
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; osmium tetroxide; lead salt
Processing history: Image extracted from .pdf file of 'The Cell'
Data qualification: Processed
description: Transmission electron micrograph of stacked annulate lamellae from the oocyte of the sea urchin Arbacia. Annulate lamellae consist of sheets of membrane containing closely packed structures resembling nuclear pores. Micrographs courtesy of Susumu Ito, Figures 161 (upper) and 162 (lower) from Chapter 4 (Nucleus) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j070806b
title: CIL:11831, Cricetulus griseus. In Cell Image Library

description: Light microscopy of the same field of cells showing the phase contrast image of a monolayer of K2 Chinese Hamster Ovary (CHO)cells (upper panel), and in the lower panel, immunofluorescence staining using an antibody against a component of the nuclear lamina. Fluorescence is concentrated in the periphery of the nucleus. From Gerace L, Blum, Blobel G (1978) J. Cell Biol. 79, 546-56, reprinted with permission as Figures 159 (upper) and 160 (lower) from Chapter 4 (Nucleus) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the corresponding chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: formaldehyde fixed tissue
Relation to intact cell: cell monolayer
Item type: film
Imaging mode: phase contrast microscopy; fluorescence microscopy
Parameter imaged: fluorescence emission; distribution of epitope
Source of contrast: differences in adsorption or binding of stain; boundaries between regions with different refractive index
Visualization methods: Fluorescein (FITC)
Processing history: Image extracted from .pdf file of 'The Cell'
Data qualification: Processed
DOI: 10.6075/j0n878hs
title: CIL:11840, Potorous tridactylus, epithelial cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: X-Rhodamine
Processing history: unprocessed raw data
Data qualification: Raw;intensitiesquantitation
description: Microtubules in a PtK1 cell injected with the Pak inhibitory fragment PBD/ID(H83L). Microtubules do not exhibit retrograde flow and undergo very little net growth. Epifluorescence image series were acquired on an inverted microscope (model TE300; Nikon) equipped with electronically controlled shutters, filter wheels, and a 14-bit cooled CCD camera (Orca II; Hamamatsu Corporation) controlled by MetaMorph® software (Universal Imaging Corp.) at 5-s intervals using a 60/1.4 NA Plan Apo objective lens (Nikon). Images were taken every 5 s and are played back at 15 frames/s. For still images, see Fig. 4, A and C of associated paper (J Cell Biol, 161:845-851, 2003).
DOI: 10.6075/j0dr2tr9
title: CIL:1183, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
DOI: 10.6075/j0125rw3
title: CIL:1165, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.6075/j0gb237c
title: CIL:1164, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.6075/j09s1pv1
title: CIL:11638, Oryctolagus cuniculus, epithelial cell, of the testis. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; Scanned print from negative
Data qualification: Processed
description: Figure 325 from Chapter 13 (Cilia and Flagella) of 'The Cell' by Don W. Fawcett M.D. Histologists using the light microscope recognized a category of epithelial cell processes which had the appearance of cilia but showed no motility. These were called stereocilia to distinguish them from the motile form, or kinocilia. The stereocilia have a rather limited distribution, being found on the epididymal epithelium of mammals, and in certain sense organs, notably the organ of Corti, the crista ampullaris, maculautriculi, and macula sacculi of the mammalian inner ear; the lateral line organs of fish; and the sensilla of insects. Stereocilia in the mammalian epididymis are slender, flexible processes resembling unusually long microvilli, but they are more variable in their orientation and less closely packed than the microvilli of a brush border. They are assumed to be a device for amplifying the surface of this absorptive epithelium. A copy of the chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0cf9nxq
title: CIL:11634, Rattus sp., mesenchymal cell, of the testis. In Cell Image Library

description: Figure 322 from Chapter 13 (Cilia and Flagella) of 'The Cell' by Don W. Fawcett M.D. Cilia and flagella usually occur on motile cells or on the free surfaces of epithelia. However, a solitary cilium is a normal occurrence on the cells lining the intra- hepatic bile ducts, the intercalated ducts of the pancreas, the rete testis, and certain segments of the nephron. The functional significance of these processes is not evident, since it seems unlikely that their motility could do more than create local turbulence in the fluid contents of these excretory ducts. Such abortive cilia usually lack the central pair of microtubules and are proba- bly immotile. Because modified cilia are found in photoreceptors and in olfactory epithelia, it has been suggested that these solitary cilia might have a sensory function but there is no evidence to support this speculation. It seems probable that they are merely anomalous, rudimentary structures with no function. A copy of the chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; Print from negative scanned for Photoshop.
Data qualification: Processed
DOI: 10.6075/j03t9gg4
title: CIL:1052, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 1 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
DOI: 10.6075/j0pg1qt9
title: CIL:10520, Toxoplasma gondii RH. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgMORN1 and mCherryFP-tagged Tgalpha1tubulin. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Captured with CoolSnapHQ/ICX285. Stack corresponds to deconvolved data stack: CIL# 10521.
Unpublished image that is similar to images published in PMID: 16518471 and 20140195. See publications for other experimental details.
DOI: 10.5281/zenodo.17489605
title: GnRH2 and GnRH3 CDS from Indonesian Freshwater Teleosts

description: This dataset contains the coding sequences (CDS) of Gonadotropin-Releasing Hormone 2 (GnRH2) and Gonadotropin-Releasing Hormone 3 (GnRH3) genes isolated from Indonesian freshwater teleost fishes, including: Osphronemus goramy, Anabas testudineus, Hemibagrus nemurus, Mystus sp., Barbonymus balleroides, Tor tambroides, and Barbonymus gonionotus. A total of ten sequences were obtained. GnRH2 CDS lengths were 84 bp, and GnRH3 CDS were 93 bp.