cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/x3syk-70q94
title: Ecoli QQQQ (2564)

description: E.Coli chemotaxis mutant mimicking the fully methylated MCP state
description: <strong>Tilt Series Date:</strong> 2010-11-22</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> John Parkinson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-11-22-20/rawdata/</p>10nov22b_2546_QQQQ_033_orig.st,  Tilt Series (Pixel Size 0.0 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-11-22-20/rawdata/10nov22b_2546_QQQQ_033_orig.st"
        > <i class="download icon"></i> Download </a></p>

        10nov22b_2546_QQQQ_033.rec,  Reconstruction (Pixel Size 0.0 nm), 167.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        10nov22b_2546_QQQQ_033unbin.rec,  unbinned, 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6ndgc-aa052
title: caulobacter_7dgrowth_contaminate

description: This batch of caulobacter with 7days growth was contaminated with an unknown bacterium and bacteriophages
description: <strong>Tilt Series Date:</strong> 2013-11-18</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-18-16/rawdata/</p>7days_atlas20013.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-18-16/rawdata/7days_atlas20013.mrc"
        > <i class="download icon"></i> Download </a></p>

        7days_atlas20013_part121_8.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        psa2013-11-18-16_slicer16287.png,  possible REZ .  dead cell? .  -andrew, 484.4 kB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/crj8q-dze20
title: Vibrio cholerae (GFP-MreB)

description: Strain TRH7000 from Maria Sandkvist
description: <strong>Tilt Series Date:</strong> 2010-10-09</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2010-10-09-3/rawdata/</p>10oct09a_at1_005.ali,  Tilt Series (Pixel Size 0.0 nm), 253.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2010-10-09-3/rawdata/10oct09a_at1_005.ali"
        > <i class="download icon"></i> Download </a></p>

        10oct09a_at1_005.ali,  Tilt Series (Pixel Size 0.0 nm), 253.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        10oct09a_at1_005_full.rec,  Reconstruction (Pixel Size 0.0 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2010-10-09-3/3dimage_43238/10oct09a_at1_005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p22dj-xmz97
title: CB15N,M2 buffer

description: Raw data files of CB15N,M2 buffer
description: <strong>Tilt Series Date:</strong> 2009-11-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> synchronized in M2 buffer</p>
  aba2009-11-06-36_slicer9736.jpg: unknown filament bundle, DNA? Comb?  .  Caulobacter crescentus
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-36/rawdata/</p>09nov06a_swarmerM2buffer_041.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov06a_swarmerM2buffer_041.rec,  Reconstruction (Pixel Size 1.264 nm), 254.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov06a_swarmerM2buffer_041.rec,  Reconstruction (Pixel Size 1.264 nm), 254.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.w53w64
title: Occurrence Download

description: A dataset containing 10202 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ruppia cirrhosa"
 ]
}

 The dataset includes 10202 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036352-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9be4b7
title: Occurrence Download

description: A dataset containing 48343 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ruppia maritima"
 ]
}

 The dataset includes 48343 records from 694 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036351-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/e3vxg-wkj76
title: caulobacter_7dgrowth_contaminate

description: This batch of caulobacter with 7days growth was contaminated with an unknown bacterium and bacteriophages
description: <strong>Tilt Series Date:</strong> 2013-11-18</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-18-9/rawdata/</p>7days_atlas20006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-18-9/rawdata/7days_atlas20006.mrc"
        > <i class="download icon"></i> Download </a></p>

        7days_atlas20006_part121_18.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        psa2013-11-18-9_slicer16280.png,  several small REZ, 373.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/psa2013-11-18-9_slicer16280.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6dkmw-1f613
title: mitochondria

description: Raw data files of mitochondria
description: <strong>Tilt Series Date:</strong> 2013-08-24</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> mitochondria</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-24-7/rawdata/</p>mito0007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-24-7/rawdata/mito0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        mito0007_part131_18.rec,  Reconstruction (Pixel Size 1.92 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-24-7/3dimage_30088/mito0007_part131_18.rec"
        > <i class="download icon"></i> Download </a></p>

        etl2013-08-24-7_slicer19385.png, , 519.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/etl2013-08-24-7_slicer19385.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5c6pk-99j81
title: Haloarcula argentinensis

description: Haloarcula argentinensis
description: <strong>Tilt Series Date:</strong> 2014-06-24</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Haloarcula argentinensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-11/rawdata/</p>Argentinensis0006.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-11/rawdata/Argentinensis0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        Argentinensis0006_full.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-11/3dimage_43950/Argentinensis0006_full.rec"
        > <i class="download icon"></i> Download </a></p>

        aba2014-06-24-11_slicer16414.png,  individual DNA strands .  -andrew, 878.3 kB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5decz-pa262
title: E. coli delta-CheA

description: Strain RP9535 (delta CheA)
description: <strong>Tilt Series Date:</strong> 2014-05-13</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> MG1655</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-13/rawdata/</p>RP9535Tomo0013.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-13/rawdata/RP9535Tomo0013.mrc"
        > <i class="download icon"></i> Download </a></p>

        RP9535Tomo0013.rec,  Reconstruction (Pixel Size 0.0 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-13/3dimage_46615/RP9535Tomo0013.rec"
        > <i class="download icon"></i> Download </a></p>

        RP9535Tomo0013SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 6.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-13-13/3dimage_46616/RP9535Tomo0013SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.sbcy4q
title: Occurrence Download

description: A dataset containing 1031101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthoxanthum odoratum"
 ]
}

 The dataset includes 1031101 records from 3437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036263-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzt33j
title: Occurrence Download

description: A dataset containing 102382 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((119.5458 -10.31522, 122.4246 -10.31522, 122.4246 -7.427288, 119.5458 -7.427288, 119.5458 -10.31522))"
 ]
}

 The dataset includes 102382 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011415-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fahj9
title: Occurrence Download

description: A dataset containing 1461946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllonorycter lysimachiaeella (Chambers, 1875), Idiomyctus nigrostriatus (Synave, 1961), Empidonax difficilis S.F.Baird, 1858, Tetraloniella pomonae (Cockerell, 1915), Astala polingi (Barnes & Benjamin, 1924), Tupiocoris californicus (Stal, 1859), Maculonecroscia braggi Seow-Choen, 2016, Phyllocnistis magnoliella Forbes, 1923, Tetranychus magnoliae Boudreaux, 1954, Protesilaus helios (Rothschild & Jordan, 1906), Archips magnoliana (Fernald, 1892), Striatacanthus abruptus Gibson, 2003, Icerya seychellarum (Westwood, 1855), Microterys zhaoi Xu, 2000, Microterys postmarginis Xu, 2000, Urotocus fusiformis McIntosh, 1935, Ricinus dendroicae Nelson, 1972, Leptoglossus fulvicornis (Westwood, 1842), Cochoa viridis Hodgson, 1836, Ducula aenea (Linnaeus, 1766), Heterophasia picaoides (Hodgson, 1839), Rhopodytes tristis (Lesson, 1830), Leiothrix argentauris (Hodgson, 1837), Aphelinus hongkongensis Hayat, 1994, Dicrurus bracteatus Gould, 1843, Coracina melas (Lesson, 1828), Ptilinopus ornatus Schlegel, 1871, Rhyticeros plicatus (J.R.Forster, 1781), Coracina schisticeps (G.R.Gray, 1846), Oriolus szalayi (Madarász, 1900), Ducula rufigaster (Quoy & Gaimard, 1832), Xanthotis flaviventer (R.Lesson, 1828), Pitohui kirhocephalus (Lesson & Garnot, 1827), Melilestes megarhynchus (G.R.Gray, 1858), Mino dumontii Lesson, 1827, Coracina boyeri (G.R.Gray, 1846), Ailuroedus buccoides (Temminck, 1836), Glycichaera fallax Salvadori, 1878, Cyclopsitta melanogenia (Rosenberg & Hkb, 1866), Reinwardtoena reinwardti (Temminck, 1824), Melanocharis nigra (Lesson, 1830), Macropygia amboinensis (Linnaeus, 1766), Ducula zoeae (Desmarest, 1826), Ptilinopus pulchellus (Temminck, 1835), Xanthotis polygrammus (G.R.Gray, 1862), Philemon buceroides (Swainson, 1838), Microdynamis parva (Salvadori, 1876), Solenopsis invicta Buren, 1972, Polytelis anthopeplus monarchoides Schodde, 1993, Witchelinamiris viridimaculatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1461946 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011416-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ebqru
title: Occurrence Download

description: A dataset containing 57005 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otis tarda Linnaeus, 1758"
 ]
}

 The dataset includes 57005 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011135-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0435242
title: Wa7 Steqstum Ti Amha Swa7 (We Keep All The Goodness)

description: A BC First Nation is taking a proactive approach to tackling youth crime through the development and implementation of restorative justice programming. To gain a better understanding of what other First Nations restorative justice programs look like and to provide recommendations on best practices for youth crime programs, the First Nation collaborated with students from the Entry-to-Practice PharmD Program at the University of British Columbia. Project team members worked with the Youth Crime Prevention Manager of the First Nation to create a literature review and recommendations for the development of the youth restorative justice program. A literature search was performed to review existing Indigenous youth-based restorative justice services and programs and recommendations from government publications in the development of Indigenous-focused social services and programs. Seventeen key articles discussed in the final report were summarized in a written report. A final report containing recommendations based on the review and a presentation of the final project was created.
DOI: 10.14288/1.0438001
title: Gut commensal Enterocloster species host inoviruses that are secreted in vitro and in vivo

description: This repository contains the raw data for this study. The files are divided based on the figure they contributed to. Each figure folder has a README file that tells you what the files inside it mean. To see the code used to analyze and plot the raw data present, please go to the following GitHub repository &lt;a href="https://github.com/Tropini-lab/Enterocloster_inoviruses_data_and_code"&gt;(https://github.com/Tropini-lab/Enterocloster_inoviruses_data_and_code)&lt;/a&gt;
DOI: 10.14288/1.0435248
title: Visual Summary of Traditional Medicines

description: The Community Health Centre (CHC) for a BC First Nation for delivers holistic health services through four sub-departments, one of which specializing in Traditional Healing. They are guided by the First Nation’s traditional principles and values and aim to integrate traditional methods into all their practices. The community has identified a need to summarize traditional uses of local plants in a visual medium to be easily shared and displayed. This project created a visual summary of traditional medicines and local plants used by the CHC’s local expert herbologist, in efforts to preserve and revitalize traditional medicines knowledge. Project members conducted research using online resources, community partner interviews, and other community-specific sources including existing pamphlets and handouts to create a poster visualizing summaries of local plants and their common uses. The traditional medicines were translated into their traditional names.