cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.aw1tje
title: Occurrence Download

description: A dataset containing 26631 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Diveboard - Scuba diving citizen science observations"
 ]
}

 The dataset includes 26631 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000482-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycdt0k
title: Occurrence Download

description: A dataset containing 6940 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Rhipicephalus sanguineus Latreille, 1806",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6940 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011078-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc4qen
title: Occurrence Download

description: A dataset containing 209179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-811.09082 -56.90361,-751.64704 -56.90361,-751.64704 15.81934,-811.09082 15.81934,-811.09082 -56.90361))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is ada9d123-ddb4-467d-8891-806ea8d94230",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 209179 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179337-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et0a8v
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turdus grayi umbrinus"
 ]
}

 The dataset includes 62 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011062-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oaxwaj
title: Occurrence Download

description: A dataset containing 59546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sus scrofa sp. domesticus Erxleben, 1777"
 ]
}

 The dataset includes 59546 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000482-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntybts
title: Occurrence Download

description: A dataset containing 919215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arecaceae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 919215 records from 1425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179419-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbt9gj
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heliconius charithonia",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is 1990"
 ]
}

 The dataset includes 189 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019900-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5t786v
title: Occurrence Download

description: A dataset containing 2870 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Withania somnifera",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2870 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019901-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17039489
title: K-FluDB

description: K-FluDB: A Novel K-Mer Based Database for Enhanced Genomic Surveillance of Influenza A Viruses

K-FluDB is a compressed database composed of distinct sub-sequences specific to 50 influenza A subtypes. It includes unique sequences for all 18 hemagglutinin (HA) and 11 neuraminidase (NA) subtypes. The original influenza sequences were obtained from the NCBI database on May 8, 2022, comprising a total of 895,900 Influenza A sequences.

To generate this database, sequences were first subsampled based on genomic segment and variant group, resulting in 81,262 sequences. These sequences served as input for the PanGen-InfluenzaA tool (GitHub), which constructs pangenomes by identifying both unique subtype-specific sequences and sequences shared across multiple subtypes.

Repository Contents

This repository contains a ZIP archive with three folders, each corresponding to pangenome datasets designed for reads of 74, 150, and 300 nucleotides in length. Each folder includes the following files:





Dispensable data files (1_dispensable.fasta to 8_dispensable.fasta):These files contain the dispensable genomic fragments for each of the eight segments of the Influenza A virus.




Unique data files (1_unique.fasta to 8_unique.fasta):These files contain the unique genomic fragments for each segment. The recommended files for mapping against genomic reads are 4_unique.fasta and 6_unique.fasta, corresponding to segments 4 and 6, which are the targets commonly used for Influenza A subtyping.




pangenome.fasta:This file contains the combined set of unique and dispensable genomic fragments for all eight segments.




unique.fasta:This file includes only the unique genomic fragments for all eight segments.


4_6_unique.fasta:This file incudes unique pangenomic pieces only for segments 4 and 6, and contains all 18 Htypes and 11Ntypes, this is the recomended file to use for Influenza A subtyping purposes.


Compression Efficiency and Classification Accuracy

K-FluDB achieves a relative compression index of 96.54% when using the complete pangenome and 99.64% when considering only subtype-specific sequences. The average precision for correctly classifying Hx and Nx subtypes using the unique sequences is 99.2% and 99.71%, respectively.

This database provides a highly efficient and accurate resource for influenza A subtype classification while significantly reducing the storage and computational requirements associated with full-genome analyses.



Acknowledgements


This research was partially supported by grants by PAPIIT-DGAPA-IN230523 awarded to BT. The first author gratefully acknowledges the scholarship provided by CONAHCYT. We also extend our sincere appreciation to the National Autonomous University of Mexico (UNAM) for granting access to the MIZTLI supercomputer, supported by the General Directorate of Computing and Information and Communication Technologies (DGTIC) through project LANCAD-UNAM-DGTIC-350.
DOI: 10.3886/e204881
title: Data and Code for: Home, Sweet Home: Returns to Returning in the Age of Mass Migration

description: Note: here is provided data and code accompanying the article.<br><br>We provide new evidence on return migrants during the Age of Mass Migrationusing a large dataset of linked US migrants and stayers in Sweden. Focusing on indi-viduals ﬁrst observed in childhood, we estimate returns to temporary migration con-trolling for a number of pre-migration characteristics. We document limited eﬀects onlabor income and occupational upgrading, but ﬁnd large wealth eﬀects. Male returneesheld almost twice the wealth of stayers and were 40 percent wealthier than their stay-ing brothers. These eﬀects were likely driven by accumulated savings overseas. Forfemale returnees, wealth eﬀects were of similar magnitude, realized primarily throughmarriage.<br>
description: The study uses several sources of data linked together: emigrants, immigrants, death index, and censuses.
description: Emigrants to the United States from Sweden, 1880-1910. Of these: return migrants. Stayers in Sweden.
DOI: 10.3886/e204881v1
title: Data and Code for: Home, Sweet Home: Returns to Returning in the Age of Mass Migration

description: Note: here is provided data and code accompanying the article.<br><br>We provide new evidence on return migrants during the Age of Mass Migrationusing a large dataset of linked US migrants and stayers in Sweden. Focusing on indi-viduals ﬁrst observed in childhood, we estimate returns to temporary migration con-trolling for a number of pre-migration characteristics. We document limited eﬀects onlabor income and occupational upgrading, but ﬁnd large wealth eﬀects. Male returneesheld almost twice the wealth of stayers and were 40 percent wealthier than their stay-ing brothers. These eﬀects were likely driven by accumulated savings overseas. Forfemale returnees, wealth eﬀects were of similar magnitude, realized primarily throughmarriage.<br>
description: The study uses several sources of data linked together: emigrants, immigrants, death index, and censuses.
description: Emigrants to the United States from Sweden, 1880-1910. Of these: return migrants. Stayers in Sweden.
DOI: 10.15468/dl.gj9u3r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achnanthes, Psammothidium, Achnanthes crassa, , Achnanthes standeri, Achnanthes subaffinis, Achnanthes swazi, Achnanthidium, , Achnanthidium biasolettianum, Achnanthidium exiguum, Achnanthidium macrocephalum, Achnanthidium saprophilum, Actinotaenium, Adlafia, Adlafia bryophila, Ammatoidea, , Amphora, Frustulia, Amphora fontinalis, , , Amphora normanii, Amphora ovalis, Amphora pediculus, Amphora strigosa, Amphora veneta, Anabaena flosaquae, Anabaena, Ankistrodesmus, Apatococcus, Aphanocapsa, Aphanothece, Asterionella, Asterionella formosa, Audouinella, Aulacoseira, Bacillaria, Batrachospermum, Brachysira, Brachysira brebissonii, Brachysira neoxilis, Brachysira wygaschii, Brachysira zellensis, Bulbochaete, Caloneis, Caloneis bacillum, , Calothrix, Capartogramma, , Chaetosphaeridium, Chamaesiphon, Characiopsis, Chlamydomonas, Chlorella, Chlorella saccharophila, Chlorobotrys, Chlorosarcina, Chroococcus, Chroococcus minutus, Chroodactylon, Cladophora glomerata, Cladophora, Closterium, Closterium abruptum, Closterium lineatum, Cocconeis, Cocconeis engelbrechtii, Cocconeis pediculus, Cocconeis placentula, , Coelosphaerium, Coenochloris, Coenococcus, Coenocystis, Cosmarium, Cosmarium tinctum, Craticula accomoda, Craticula, Craticula ambigua, Craticula halophila, Craticula molestiformis, Craticula vixnegligenda, Crucigenia, Cryptomonas, Ctenophora pulchella, Ctenophora, , Cyclostephanos, Cyclotella meneghiniana, Cyclotella, Cyclotella ocellata, Cylindrocapsa, Cylindrocystis, Cylindrospermum, Cymatopleura, )",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019903-250827131500795/datasets/export for details.
DOI: 10.15468/dl.q66pfx
title: Occurrence Download

description: A dataset containing 583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Panisus michaeli, Acentrella, Baetis, Dugesia, Adenophlebia, Aprionyx, Castanophlebia, Choroterpes, Ephemerellina, Lestagella, Ferrissia, Lumbriculus, , Platycyclops, Prostoma, Psychoda alternata, Psychoda, Chironomus, Culex, Trithemis, Tubifex, Dero, Baetis harrisoni, Simulium, Pseudagrion, Laccocoris limigenus, Laccocoris, Micronecta piccanin, Micronecta, Micronecta scutellaris, Pisidium, Plea pullula, Potamon, Sigara sjoestedti, Sigara, Austrocaenis, Burnupia, Centroptilum, Cloeon, Cloeon crassi, Crocothemis erythraea, Crocothemis, Enithares sobria, Enithares, Yola subopaca, Yola, Ecnomus, Anisops aglaia, Anisops, Anisops gracilis, Aulonogyrus, Bulinus, Guignotus, Gyraulus, Ischnura senegalensis, Ischnura, Laccophilus cyclopis, Physa, Potamonectes, Sharphydrus coriaceus, Sharphydrus, Sigara meridionalis, Simulium ruficorne, Adenophlebia peringueyella, Aphanicercella, Aphanicercopsis, Athripsodes, Castanophlebia calida, Centroptiloides bifasciatum, Centroptiloides, Cheumatopsyche maculata, Leptonema, Cheumatopsyche, Chimarra, Hydroptila, Lithogloea, Macronema, Neoperla spio, Neoperla, Pseudocloeon, Pseudocloeon vinosum, Anax imperator, Anax, Bulinus tropicus, Cybister, Herophydrus oscillator, Lymnaea, Orthetrum, Pseudagrion massaicum, Pyrgophysa, Sphaerodema capensis, Appasus, Succinea, Cheumatopsyche afra, Acroperus harpae, Acroperus, Aedes, Afroeubria, Afronurus, Alluaudomyia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 583 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019905-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16754724
title: Navigating The Unknown: Data-Driven Image Processing and Simplified Renderings for Small Body Flybys

description: Image-Label datasets used in the conference paper titled "Navigating The Unknown: Data-Driven Image Processing and Simplified Renderings for Small Body Flybys", presented at the 2025 AAS/AIAA Astrodynamics Specialist Conference, Boston, MA, August 10-14, 2025
DOI: 10.5281/zenodo.17039466
title: Navigating The Unknown: Data-Driven Image Processing and Simplified Renderings for Small Body Flybys

description: Image-Label datasets used in the conference paper titled "Navigating The Unknown: Data-Driven Image Processing and Simplified Renderings for Small Body Flybys", presented at the 2025 AAS/AIAA Astrodynamics Specialist Conference, Boston, MA, August 10-14, 2025
DOI: 10.3886/e237433v1
title: Data for paper "Institutional pressure, resource orchestration, and the digital government performance: a mixed methods study in the case of China“ (0)

description: The dataset supporting the findings of the article ““Institutional pressure, resource orchestration, and the digital government performance: a mixed methods study in the case of China” has been deposited in the open repository, providing the original data, the calibrated data and other related data used in the analysis.<br>
DOI: 10.15468/dl.ppw7s4
title: Occurrence Download

description: A dataset containing 19243 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boehmeria japonica"
 ]
}

 The dataset includes 19243 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019906-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4nyu3
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monomitopus metriostoma"
 ]
}

 The dataset includes 124 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019907-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrf2tz
title: Occurrence Download

description: A dataset containing 13802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chamaecrista nictitans"
 ]
}

 The dataset includes 13802 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019904-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgtvvc
title: Occurrence Download

description: A dataset containing 11930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleutherodactylus planirostris"
 ]
}

 The dataset includes 11930 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019908-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z93tmx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum subulatum",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019909-250827131500795/datasets/export for details.
DOI: 10.15468/dl.zd8fq8
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum subulatum",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 63 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019910-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xk96du
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum subulatum",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019911-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zehzhz
title: Occurrence Download

description: A dataset containing 4392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ziziphus mucronata",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4392 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019912-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16938686
title: Processed data for "Using spatial proteomics to enhance cell type assignments in histology images" (TWMU-TR)

description: This contains the processed CODEX and H&E images (64x64 tiles) and celltype assignments for the TWMU-TR dataset in Dayao et al. "Using spatial proteomics to enhance cell type assignments in histology images".
DOI: 10.5281/zenodo.16938687
title: Processed data for "Using spatial proteomics to enhance cell type assignments in histology images" (TWMU-TR)

description: This contains the processed CODEX and H&E images (64x64 tiles) and celltype assignments for the TWMU-TR dataset in Dayao et al. "Using spatial proteomics to enhance cell type assignments in histology images".
DOI: 10.15468/dl.62qnj5
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achnanthes, Psammothidium, Achnanthes crassa, , Achnanthes standeri, Achnanthes subaffinis, Achnanthes swazi, Achnanthidium, , Achnanthidium biasolettianum, Achnanthidium exiguum, Achnanthidium macrocephalum, Achnanthidium saprophilum, Actinotaenium, Adlafia, Adlafia bryophila, Ammatoidea, , Amphora, Frustulia, Amphora fontinalis, , , Amphora normanii, Amphora ovalis, Amphora pediculus, Amphora strigosa, Amphora veneta, Anabaena flosaquae, Anabaena, Ankistrodesmus, Apatococcus, Aphanocapsa, Aphanothece, Asterionella, Asterionella formosa, Audouinella, Aulacoseira, Bacillaria, Batrachospermum, Brachysira, Brachysira brebissonii, Brachysira neoxilis, Brachysira wygaschii, Brachysira zellensis, Bulbochaete, Caloneis, Caloneis bacillum, , Calothrix, Capartogramma, , Chaetosphaeridium, Chamaesiphon, Characiopsis, Chlamydomonas, Chlorella, Chlorella saccharophila, Chlorobotrys, Chlorosarcina, Chroococcus, Chroococcus minutus, Chroodactylon, Cladophora glomerata, Cladophora, Closterium, Closterium abruptum, Closterium lineatum, Cocconeis, Cocconeis engelbrechtii, Cocconeis pediculus, Cocconeis placentula, , Coelosphaerium, Coenochloris, Coenococcus, Coenocystis, Cosmarium, Cosmarium tinctum, Craticula accomoda, Craticula, Craticula ambigua, Craticula halophila, Craticula molestiformis, Craticula vixnegligenda, Crucigenia, Cryptomonas, Ctenophora pulchella, Ctenophora, , Cyclostephanos, Cyclotella meneghiniana, Cyclotella, Cyclotella ocellata, Cylindrocapsa, Cylindrocystis, Cylindrospermum, Cymatopleura, )",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 484 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019913-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.