cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.em3dgm
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meconopsis cambrica Linnaeus, 1753",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299667-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2gm6k
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea lucida Maguire & Wurdack"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115077-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uebm6n
title: Occurrence Download

description: A dataset containing 2979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Hong Kong, China, Chinese Taipei)",
 "Geometry POLYGON((97.44519 17.31559,135.10906 17.31559,126.5605 24.63556,121.67157 31.54383,97.44519 32.36562,97.44519 17.31559))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Perina nuda Fabricius, 1787"
 ]
}

 The dataset includes 2979 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115064-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgsac4
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grewia coriacea Garcke ex Mast."
 ]
}

 The dataset includes 379 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284560-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwxe83
title: Occurrence Download

description: A dataset containing 299491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-94500.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Talpidae",
 "Year 1000-2023"
 ]
}

 The dataset includes 299491 records from 939 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115068-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qx4swj
title: Occurrence Download

description: A dataset containing 35645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus sylvestris L.",
 "Year 1990-2022"
 ]
}

 The dataset includes 35645 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284559-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bx2b9w
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea intermedia Pruski & Urbatsch"
 ]
}

 The dataset includes 17 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115069-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byg5hu
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odorrana nasica (Boulenger, 1903)"
 ]
}

 The dataset includes 202 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299649-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrvjhm
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea megacephala B.L.Rob. & Greenm."
 ]
}

 The dataset includes 93 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115085-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2renp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epeorus hiemalis Imanishi, 1934",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308042-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtcjav
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea mediterranea (Vell.) Pruski"
 ]
}

 The dataset includes 483 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115084-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dd2n6f
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agalychnis buckleyi (Boulenger, 1882)"
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308002-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gupny
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arcestidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 242 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017566-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35qyup
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ecdyonurus tigris",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308031-210914110416597/datasets/export for details.
DOI: 10.15468/dl.ah8drx
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea pohliana Sch.Bip. ex Baker"
 ]
}

 The dataset includes 57 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115112-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9ppqa
title: Occurrence Download

description: A dataset containing 11289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambrosia psilostachya DC."
 ]
}

 The dataset includes 11289 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308000-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5282/ubm/data.590
title: Bangkok urban census of aquatic invertebrate fauna by an integrative taxonomic approach: the case of Suan Luang Rama IX Park and its freshwater sponges (Spongillida: Spongillidae)

description: Faunistic investigations on freshwater bodies of the Bangkok Metropolitan Area resulted in the discovery of a freshwater sponges population fragmented in lentic microhabitats at the Suan Luang Rama IX Park. Sponges inhabited small water bodies of. Sponges living the lotus and waterlily garden and tropical greenhouse were photographed in situ, and some representative, small samples were collected and stored at the Division of Biology (Porifera collection), Rajamangala University of Technology Krungthep, Bangkok, Thailand. The taxonomic integrative analyses focused on diagnostic morphotraits, barcoding, and biogeography. The sponge population was ascribed to Radiospongilla cf. cerebellata (Porifera: Demospongiae: Spongillida: Spongillidae) and is a new record for the Bangkok area and the entire Thai inland water. Comparative integrative analyses vs spongillid taxa worldwide resulted in the discovery of new morphotraits for the genus. Radiospongilla cf. cerebellata was confirmed by molecular analyses and diverges from other congeneric species at the level of skeletal spicules and gemmular architecture. This investigation on aquatic fauna highlights that flourishing sponges are able to inhabit very confined and fragmented urban, shallow water bodies, i.e., scattered terracotta pots, plastic containers and small ponds with aquatic plants also in megalopolis gardens.
DOI: 10.25850/nioz/7b.b.mj
title: Data and script for "High CO2 emission rates from dredged sediments than global soils: Discerning moisture, temperature, and oxygen responses in carbon release"

description: Understanding carbon emissions from dredged sediments under changing environmental conditions is critical for assessing their environmental impact in large-scale sediment reuse projects. This study investigates the effects of moisture, temperature, and oxygen availability on CO₂ emission rates from dredged sediments collected from the Port of Rotterdam, comparing them with global soil data from nearly 400 laboratory incubations. Sediment incubation experiments revealed that CO₂ emissions increased with higher moisture levels, elevated temperatures, and oxygen exposure. However, the observed optimal moisture (&gt;85% water-filled pore space) and temperature (20–30 °C) differed from transitional biogeochemical model assumptions, indicating a need to revisit these functions. Machine learning analysis using XGBoost suggested that similar moisture and temperature response patterns are widespread in both soils and sediments, whereas oxygen has stronger effect on sediments, likely because organic carbon is better preserved in reducing environments than aerated soils. Notably, under oxic conditions, dredged sediment exhibited higher CO2 emissions rates than many soils, implying the more reactive nature of carbon in dredged sediments. A two-pool model further indicated that carbon emissions in most incubations were dominated by the slow carbon pool, with differences in average emission rates throughout incubation reflecting the carbon reactivity of slow pool. These findings suggest that dredged sediments, if not handled properly, can act as a biochemical carbon bomb upon oxygen exposure. Therefore, carbon-sensitive sediment management strategies are essential to mitigate carbon emissions during sediment dredging, processing, and reuse.
DOI: 10.15468/dl.6tptrm
title: Occurrence Download

description: A dataset containing 22010 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argiope argentata (Fabricius, 1775)"
 ]
}

 The dataset includes 22010 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018174-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13935096
title: From stream to bloom: Exploring the Potential Role of Aquatic Insects for Pollination in Wetland Environments

description: The dataset used to produce the following review: "From Stream to Bloom: Exploring the Potential Role of Aquatic Insects for Pollination in Wetland Environments"
DOI: 10.5281/zenodo.13935097
title: From stream to bloom: Exploring the Potential Role of Aquatic Insects for Pollination in Wetland Environments

description: The dataset used to produce the following review: "From Stream to Bloom: Exploring the Potential Role of Aquatic Insects for Pollination in Wetland Environments"
DOI: 10.5281/zenodo.13913898
title: Forest regeneration on sandy coastal plain, Saquarema, Rio de Janeiro, Brazil - Datasets (Quadrats Method)

description: The field data was collected between september and october 1992 in 80 plots (5 x 5 m) distributed over 15 areas (roads opened up by tractors). All 553 individuals at ground level (CGL ≥ 7,8 cm) were measured. Here I make available the raw data of live individuals and useful information on the sites and sampling plots. The description of the area and the sampling, and the phytosociological analysis are available Sá CFC. 2002. Regeneração de um trecho de floresta de restinga na Reserva Ecológica Estadual de Jacarepiá, Saquarema, Estado do Rio de Janeiro: II - Estrato arbustivo Rodriguésia 53(82): 5-23.  (https://www.scielo.br/j/rod/a/RZvHjGMvkBYCJs3qXVgMZHw/?lang=pt)

Notes: (1) Now the area is recognized as part of the "Parque Estadual da Costa do Sol"  (2)  All taxa need a review according Flora e Funga do Brasil
DOI: 10.5281/zenodo.13913899
title: Forest regeneration on sandy coastal plain, Saquarema, Rio de Janeiro, Brazil - Datasets (Quadrats Method)

description: The field data was collected between september and october 1992 in 80 plots (5 x 5 m) distributed over 15 areas (roads opened up by tractors). All 553 individuals at ground level (CGL ≥ 7,8 cm) were measured. Here I make available the raw data of live individuals and useful information on the sites and sampling plots. The description of the area and the sampling, and the phytosociological analysis are available Sá CFC. 2002. Regeneração de um trecho de floresta de restinga na Reserva Ecológica Estadual de Jacarepiá, Saquarema, Estado do Rio de Janeiro: II - Estrato arbustivo Rodriguésia 53(82): 5-23.  (https://www.scielo.br/j/rod/a/RZvHjGMvkBYCJs3qXVgMZHw/?lang=pt)

Notes: (1) Now the area is recognized as part of the "Parque Estadual da Costa do Sol"  (2)  All taxa need a review according Flora e Funga do Brasil
DOI: 10.7910/dvn/eoyzkh/67gplv
title: Fig3_mean_variance_trade_off.ipynb

description: Fig. 3. Mean-variance trade-off. Mean and SD of absolute errors incurred by top-k estimates during the adapted periods (experimental data).
DOI: 10.7910/dvn/eoyzkh/wyzodv
title: Fig4_mechanisms.ipynb

description: Fig. 4. Mechanisms promoting collective intelligence in dynamic networks.
DOI: 10.15468/dl.jtmjaw
title: Occurrence Download

description: A dataset containing 2195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Vitis rupestris Scheele)"
 ]
}

 The dataset includes 2195 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018176-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckdujd
title: Occurrence Download

description: A dataset containing 996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Solenostomus cyanopterus Bleeker, 1854"
 ]
}

 The dataset includes 996 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018179-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eoyzkh/lnomr3
title: Table_S2.ipynb

description: Mixed effects models for individual and group errors for the second experiment (i.e., varying feedback).
DOI: 10.15468/dl.74k76h
title: Occurrence Download

description: A dataset containing 2195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Vitis rupestris Scheele)"
 ]
}

 The dataset includes 2195 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018177-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eoyzkh/5aqg5a
title: all_studies_game_data.tab

description: game-level data (e.g., collective estimates)
DOI: 10.7910/dvn/eoyzkh/y9eixa
title: Table_S4.ipynb

description: Mixed effects model for the improvement of the best individual.
DOI: 10.18131/8cpp6-fyw48
title: UknownTimeData

description: This files contains participant averages for MOS, step width, step time and step length when the timing of perturbation is unknown.
DOI: 10.7910/dvn/eoyzkh/drh8r4
title: Fig2_Individual_and_collective_outcomes.ipynb

description: Fig. 2. Individual and collective outcomes.
DOI: 10.7910/dvn/eoyzkh/bne9mt
title: generate_group_data.ipynb

description: generating group-level data from individual-level data
DOI: 10.15468/dl.chhkqz
title: Occurrence Download

description: A dataset containing 1511 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Gnathoncus buyssoni Auzat, 1917",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 1511 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018178-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eoyzkh/wbabxt
title: Table_S1.ipynb

description: Mixed effects models for individual and group errors for the first experiment (i.e., varying plasticity).
DOI: 10.7910/dvn/eoyzkh/unzxs5
title: Table_S3.ipynb

description: Mixed effects models for individual and group errors for the dynamic condition in E_1 and full-feedback condition in E_2.
DOI: 10.5281/zenodo.13941548
title: LDEO pCO2-Residual Method

description: The ocean reduces human impacts on global climate by absorbing and sequestering CO2 from the atmosphere. To quantify global, time-resolved air-sea CO2 fluxes, surface ocean pCO2 is needed. A common approach for estimating full-coverage pCO2 is to train a machine learning algorithm on sparse in situ pCO2 data and associated physical and biogeochemical observations. Though these associated variables have understood relationships to pCO2, it is often unclear how they drive pCO2 outputs. Here, we make two advances that enhance connections between physical understanding and reconstructed pCO2. First, we apply pre-processing to the pCO2 data to remove the direct effect of temperature. This enhances the biogeochemical/physical component of pCO2 in the target variable and reduces the complexity that the machine learning must disentangle. Second, we demonstrate that the resulting algorithm has physically understandable connections between input data and the output biogeochemical/physical component of pCO2. The final pCO2 reconstruction agrees modestly better with independent data than most other approaches. Uncertainties in the reconstructed pCO2 and impacts on the estimated CO2 fluxes are quantified. Uncertainty in piston velocity drives substantial flux uncertainties in some regions, but does not increase globally integrated estimates of uncertainty in CO2 fluxes from observation-based products. Our reconstructed CO2 fluxes show larger interannual variability than smoother neural network approaches, but a lesser trend since 2005. 
description: This file will be updated annually to extend the time period as new SOCAT databases are released.
DOI: 10.5281/zenodo.11244154
title: Revisiting the Relation Between Robustness and Universality: Inverted Images on ImageNet (Standard Models)
DOI: 10.5281/zenodo.7636889
title: LDEO pCO2-Residual Method

description: The ocean reduces human impacts on global climate by absorbing and sequestering CO2 from the atmosphere. To quantify global, time-resolved air-sea CO2 fluxes, surface ocean pCO2 is needed. A common approach for estimating full-coverage pCO2 is to train a machine learning algorithm on sparse in situ pCO2 data and associated physical and biogeochemical observations. Though these associated variables have understood relationships to pCO2, it is often unclear how they drive pCO2 outputs. Here, we make two advances that enhance connections between physical understanding and reconstructed pCO2. First, we apply pre-processing to the pCO2 data to remove the direct effect of temperature. This enhances the biogeochemical/physical component of pCO2 in the target variable and reduces the complexity that the machine learning must disentangle. Second, we demonstrate that the resulting algorithm has physically understandable connections between input data and the output biogeochemical/physical component of pCO2. The final pCO2 reconstruction agrees modestly better with independent data than most other approaches. Uncertainties in the reconstructed pCO2 and impacts on the estimated CO2 fluxes are quantified. Uncertainty in piston velocity drives substantial flux uncertainties in some regions, but does not increase globally integrated estimates of uncertainty in CO2 fluxes from observation-based products. Our reconstructed CO2 fluxes show larger interannual variability than smoother neural network approaches, but a lesser trend since 2005. 
description: This file will be updated annually to extend the time period as new SOCAT databases are released.