cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7840175
title: Appendix_results_qual_analysis_summarized

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.7850701
title: Appendix_results_qual_analysis_summarized

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.7851740
title: Appendix_results_qual_analysis_summarized

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.10084784
title: Appendix_results_qual_analysis_summarized (39-language sample)

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.7840174
title: Appendix_results_qual_analysis_summarized (39-language sample)

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.7942424
title: Appendix_results_qual_analysis_summarized (40-language sample)

description: A dataset showing a summary of the results of qualitative analysis.
DOI: 10.5281/zenodo.8395165
title: Optimal planning of autonomous electric vehicles charging stations with photovoltaic generations and energy storage systems

description: This database contains technical information on the 69-bus electrical distribution system. This system was tested in a mixed integer linear programming model for allocating autonomous electric vehicle charging stations equipped with photovoltaic generation and energy storage systems. Additionally, this document contains data related to charging stations, energy storage systems, and operational scenarios applied to the case studies.
description: The authors acknowledge the work facilities and equipment provided by GECAD research center (UIDB/00760/2020 and UIDP/00760/2020) to the project team and CEECIND/00420/2022. Additionally, we acknowledge the collaboration of our visiting researcher (Haider Ali), who was supported by the I-SITE ULNE Foundation through the PEARL Programme for EArly-stage Researchers in Lille. The authors also acknowledge the support provided by the Thematic Network 723RT0150 (RIBIERSE-CYTED)'' financed by CYTED 2022.
DOI: 10.5281/zenodo.8395166
title: Optimal planning of autonomous electric vehicles charging stations with photovoltaic generations and energy storage systems

description: This database contains technical information on the 69-bus electrical distribution system. This system was tested in a mixed integer linear programming model for allocating autonomous electric vehicle charging stations equipped with photovoltaic generation and energy storage systems. Additionally, this document contains data related to charging stations, energy storage systems, and operational scenarios applied to the case studies.
description: The authors acknowledge the work facilities and equipment provided by GECAD research center (UIDB/00760/2020 and UIDP/00760/2020) to the project team and CEECIND/00420/2022. Additionally, we acknowledge the collaboration of our visiting researcher (Haider Ali), who was supported by the I-SITE ULNE Foundation through the PEARL Programme for EArly-stage Researchers in Lille. The authors also acknowledge the support provided by the Thematic Network 723RT0150 (RIBIERSE-CYTED)'' financed by CYTED 2022.
DOI: 10.5281/zenodo.8274779
title: 236-Bus Low Voltage Distribution Network Data

description: The data describes a realistic low-voltage distribution network with 236 buses, 235 underground cables, 96 residential customers supplied by a transformer with 1000 kVA and 10 kV/420V.
The network characteristics, such as cable resistances, reactances, and thermal limits, are available.
Demand, EV demand, and photovoltaic generation profiles are presented for 8640 total 15-minute periods.
DOI: 10.5281/zenodo.8274780
title: 236-Bus Low Voltage Distribution Network Data

description: The data describes a realistic low-voltage distribution network with 236 buses, 235 underground cables, 96 residential customers supplied by a transformer with 1000 kVA and 10 kV/420V.
The network characteristics, such as cable resistances, reactances, and thermal limits, are available.
Demand, EV demand, and photovoltaic generation profiles are presented for 8640 total 15-minute periods.
DOI: 10.6084/m9.figshare.24545392
title: Processed data to reproduce figures (version 2)

description: Data for figures of the manuscript "Functional plasticity of glutamatergic neurons of medullary reticular nuclei after spinal cord injury in mice" by Lemieux, Karimi and Bretzner (in revision).
DOI: 10.6084/m9.figshare.24545392.v1
title: Processed data to reproduce figures (version 2)

description: Data for figures of the manuscript "Functional plasticity of glutamatergic neurons of medullary reticular nuclei after spinal cord injury in mice" by Lemieux, Karimi and Bretzner (in revision).
DOI: 10.6084/m9.figshare.24544582.v1
title: AAV ChR2-eYFP recombination coordinates

description: Data and scripts to reconstruct AAV position in relation to the tip of the optical implant (Suppl. Fig 2). Matlab scripts read EXCEL files containing coordinates of cells (in inches) tagged with ImageJ. Midline height is in microns to convert data from inches to microns.Related to the manuscript "Functional plasticity of glutamatergic neurons of medullary reticular nuclei after spinal cord injury in mice" by Lemieux, Karimi and Bretzner (in revision).
DOI: 10.6084/m9.figshare.24544582
title: AAV ChR2-eYFP recombination coordinates

description: Data and scripts to reconstruct AAV position in relation to the tip of the optical implant (Suppl. Fig 2). Matlab scripts read EXCEL files containing coordinates of cells (in inches) tagged with ImageJ. Midline height is in microns to convert data from inches to microns.Related to the manuscript "Functional plasticity of glutamatergic neurons of medullary reticular nuclei after spinal cord injury in mice" by Lemieux, Karimi and Bretzner (in revision).
DOI: 10.57745/logn0h
title: Pseudomonas genus genome accessions.txt

description: NCBI Genbank accession numbers of representative genome sequences of the genus Pseudomonas.
DOI: 10.57745/yy2z8s
title: Pseudomonas genus 16S phylogenetic tree.txt

description: Phylogenetic tree in Newick format based on near fulll-length 16S rRNA gene sequences showing the relationships of Pseudomonas sp. LMG 33091 among type strains of validly named species of the Pseudomonas genus. Sequences were aligned with MAFFT v7.475 in "auto" mode and maximum-likelihood phylogenetic analysis was done using IQ-TREE v. 2.2.03 with model TPM3u+F+I+G4. Branch support values correspond to the percentage of 1000 bootstrapping replications.
DOI: 10.57745/t0drdr
title: putida_group_accession_numbers_June2023.txt

description: List of NCBI Assembly accession numbers of genomes assigned to the Pseudomonas putida group, accessed June 2023
DOI: 10.57745/wyla0x
title: Pseudomonas_genus_whole_genome_phylogenetic_tree_newick.txt

description: Phylogenetic tree in Newick format based on 92 universal marker gene sequences showing the relationships of Pseudomonas sp. LMG 33091 among type or representative strains of validly named species of the Pseudomonas genus. For whole genome phylogenetic analysis, nucleotide sequences of 92 gene markers were extracted and aligned using the UBCG software, and a Maximum-Likelihood phylogeny generated using RAxML v8.2.12 with GTR + CAT mode. NCBI accession numbers of the genomes used in the analysis are available in a separate file.
DOI: 10.5281/zenodo.10107849
title: Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling - Supplementary Material

description: Supplementary material for the manuscript "Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling".


This deposit contains all data and visualization scripts needed to replicate results in the manuscript.This includes user created figures, model input files, model output files, configuration files for running the workflow, and all scripts needed to process results.


In addition to the European Commission, we acknowledge that Trevor Barnes' contribution to this paper was funded via a Mitacs Globalink Research Award, grant number IT2569
DOI: 10.5281/zenodo.7553058
title: Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling - Supplementary Material

description: Supplementary material for the manuscript "Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling".


This deposit contains all data and visualization scripts needed to replicate results in the manuscript.This includes user created figures, model input files, model output files, configuration files for running the workflow, and all scripts needed to process results.


In addition to the European Commission, we acknowledge that Trevor Barnes' contribution to this paper was funded via a Mitacs Globalink Research Award, grant number IT2569
DOI: 10.5281/zenodo.7553059
title: Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling - Supplementary Material

description: Supplementary material for the manuscript "Global sensitivity analysis to enhance the transparency and rigour of energy system optimisation modelling". This deposit contains all data and visualization scripts needed to replicate results in the manuscript.This includes user created figures, model input files, model output files, configuration files for running the workflow, and all scripts needed to process results. In addition to the European Commission, we acknowledge that Trevor Barnes' contribution to this paper was funded via a Mitacs Globalink Research Award, grant number IT2569
DOI: 10.34740/kaggle/dsv/6936608
title: 1-million Instances - Vehicle Orientation Dataset
DOI: 10.6084/m9.figshare.14068625
title: Treatment of sacroiliac joint laxity-induced coronal imbalance with the kickstand rod technique

description: Considerations of the sacroiliac joint (SIJ) and its role in causing lower back and limb pain have taken a secondary role ever since Mixter and Barr’s hallmark article in 1934 on the herniated nucleus pulposus. However, recent literature has highlighted the contribution of sacroiliac joint degeneration in the development of failed back surgery syndrome (FBSS), especially in patients undergoing lumbar or lumbosacral spinal fusion surgeries. Many reports have studied the anatomy, physiology, and clinical significance of the sacroiliac joint, but none have linked its dysfunction with other spinal deformities. A 63-year-old female with a history of multiple complex instrumented spinal fusions presented to our institution with progressive leftward coronal imbalance despite successful arthrodesis from T3 through S1. She was initially treated with decompression and reimplantation, but adjacent segment disease at the SIJ led to laxity, distal failure, and a worsening coronal deformity. A mechanical fall after her decompression surgery led to a dramatically increased coronal imbalance, which was ultimately treated using Lenke’s kickstand rod technique. At 3.5 years follow up, the patient’s coronal balance remains stable. Few studies have related SIJ degeneration and laxity with spinal deformity. Our case describes SIJ degeneration that evolved to joint laxity, which ultimately produced a leftward coronal imbalance according to the adjacent segment disease mechanism. Additionally, we describe the use of a kickstand rod to effectively correct the coronal imbalance, reduce pain levels, promote SIJ arthrodesis, and prevent further SIJ-related issues without significant complications over 3 years post-operation.
DOI: 10.6084/m9.figshare.14068625.v1
title: Treatment of sacroiliac joint laxity-induced coronal imbalance with the kickstand rod technique

description: Considerations of the sacroiliac joint (SIJ) and its role in causing lower back and limb pain have taken a secondary role ever since Mixter and Barr’s hallmark article in 1934 on the herniated nucleus pulposus. However, recent literature has highlighted the contribution of sacroiliac joint degeneration in the development of failed back surgery syndrome (FBSS), especially in patients undergoing lumbar or lumbosacral spinal fusion surgeries. Many reports have studied the anatomy, physiology, and clinical significance of the sacroiliac joint, but none have linked its dysfunction with other spinal deformities. A 63-year-old female with a history of multiple complex instrumented spinal fusions presented to our institution with progressive leftward coronal imbalance despite successful arthrodesis from T3 through S1. She was initially treated with decompression and reimplantation, but adjacent segment disease at the SIJ led to laxity, distal failure, and a worsening coronal deformity. A mechanical fall after her decompression surgery led to a dramatically increased coronal imbalance, which was ultimately treated using Lenke’s kickstand rod technique. At 3.5 years follow up, the patient’s coronal balance remains stable. Few studies have related SIJ degeneration and laxity with spinal deformity. Our case describes SIJ degeneration that evolved to joint laxity, which ultimately produced a leftward coronal imbalance according to the adjacent segment disease mechanism. Additionally, we describe the use of a kickstand rod to effectively correct the coronal imbalance, reduce pain levels, promote SIJ arthrodesis, and prevent further SIJ-related issues without significant complications over 3 years post-operation.
DOI: 10.6084/m9.figshare.14814891
title: Hemoglobin levels as a transfusion criterion in moderate to severe traumatic brain injury: a systematic review and meta-analysis

description: Several factors can influence the outcome of severe head injuries including the patient’s hemoglobin levels. There has often been a dilemma regarding levels of hemoglobin at which red cell blood transfusion (RCBT) should be performed. To systematically review the literature to determine the usefulness of management protocols that have hemoglobin levels &lt;10 g/dL vs &lt;7 g/dL as an RCBT criterion. Following the PRISMA statement, the search was constructed using terms and descriptors of the Medical Subject Heading (MeSH), combined with Boolean operators. Full text of these articles was studied, and outcome measures at 3–6 months were considered for patients who were given a RCBT at &lt;10 g/dL or at 7 g/dL hemoglobin levels. A total of 4 articles were found suitable for inclusion in the meta-analysis. RCBT below 7 g/dL was not associated with an increased risk of mortality as compared to RCBT using the value of less than 10 g/dL. RCBT at lower levels of hemoglobin was also not associated with a poor neurological outcome (GOS 4–5) but rather RCBT at lower levels lead to better outcomes (GOS 1–3) and the association was significant. Allogenic RCBT was associated with poorer neurological outcomes, within a wide range of reported differences in the hemoglobin threshold to decide for RCBT in TBI patients. Restrictive RCBT strategy may be useful in moderate to severe TBI cases although the risk of anemia-induced cerebral injury needs further investigation regarding the risks and complications inherent to RCBT.
DOI: 10.6084/m9.figshare.17814638
title: Stereotactic radiosurgery with immune checkpoint inhibitors for brain metastases: a meta-analysis study

description: Immune checkpoint inhibitors (ICIs) are an emerging tool in the treatment of brain metastases (BMs), Stereotactic radiosurgery (SRS), traditionally used for BMs, elicits an immune brain response and can act synergistically with ICIs. We aim to investigate the efficacy of ICI administered with SRS and determine the impact of timing on BM response. A systematical search was performed to identify potential studies concerning BMs managed with SRS alone or with SRS + ICI with relative timing administration (ICI concurrent with SRS, ICI nonconcurrent with SRS, SRS before ICI, SRS after ICI). The overall survival (OS), 12-month OS, local progression-free survival (LPFS), 12-month local brain control (LBC), distant progression-free survival (DPFS), 12-month distant brain control (DBC), and adverse events (intracranial hemorrhage, radionecrosis) were analyzed using the random-effects model. A total of 16 retrospective studies with 1356 BM patients were included. Compared to nonconcurrent therapy, concurrent therapy revealed a significantly longer OS (HR= 1.43; <i>p</i> = 0.008) and 12-months LBC (HR = 1.91; <i>p</i> = 0.04), a similar 12-months DBC (HR = 1.12; <i>p</i> = 0.547) and higher complication rate (<i>R</i> = 0.77; <i>p</i> = 0.346). Concurrent therapy leads to a significantly higher OS compared to ICI before SRS (HR = 2.55; <i>p</i> = 0.0003). The combination of SRS with ICI improves patients’ clinical and radiological outcomes. The effectiveness of the combination is subject to the identification of an optimal therapeutic window.
DOI: 10.6084/m9.figshare.14706958
title: Case history on Epstein-Barr Virus-associated smooth muscle tumor (EBV-SMT) of cranio-cervical junction in an immunocompetent patient

description: Epstein-Barr virus-associated smooth muscle tumor (EBV-SMT) is a rare mesenchymal tumor that almost exclusively occurs in immunocompromised hosts. Here, we report a 75-year-old Taiwanese woman without definite immune-deficient history presenting with progressive occipital neuralgia, low cranial nerve deficits (CN9-12) and cervical (C1–C5) radiculopathy. Magnetic resonance imaging revealed a 4.5*4.0*6.7 cm infiltrating mass occupying posterior skull base and C1–C2 vertebra and C1–5 epidural extension with bone destruction and vertebral artery (VA) encasement. There was also a synchronous 2.7 cm tonsillar tumor. A two-stage operation for cranio-cervical tumor excision and stabilization was performed. Tumor was confirmed directly arising from VA intraoperatively. Pathology reported a spindle cell neoplasm and the diagnosis of EBV-SMT was confirmed by EBER (EBV-encoded small RNA) in situ hybridization. An immune survey and reconstruction should be conducted for patient with EBV-SMT. A near-total resection of tumor may be beneficial for local control, however, the role of surgical resection in treating CNS EBV-SMT remains to be determined.
DOI: 10.6084/m9.figshare.14814891.v1
title: Hemoglobin levels as a transfusion criterion in moderate to severe traumatic brain injury: a systematic review and meta-analysis

description: Several factors can influence the outcome of severe head injuries including the patient’s hemoglobin levels. There has often been a dilemma regarding levels of hemoglobin at which red cell blood transfusion (RCBT) should be performed. To systematically review the literature to determine the usefulness of management protocols that have hemoglobin levels &lt;10 g/dL vs &lt;7 g/dL as an RCBT criterion. Following the PRISMA statement, the search was constructed using terms and descriptors of the Medical Subject Heading (MeSH), combined with Boolean operators. Full text of these articles was studied, and outcome measures at 3–6 months were considered for patients who were given a RCBT at &lt;10 g/dL or at 7 g/dL hemoglobin levels. A total of 4 articles were found suitable for inclusion in the meta-analysis. RCBT below 7 g/dL was not associated with an increased risk of mortality as compared to RCBT using the value of less than 10 g/dL. RCBT at lower levels of hemoglobin was also not associated with a poor neurological outcome (GOS 4–5) but rather RCBT at lower levels lead to better outcomes (GOS 1–3) and the association was significant. Allogenic RCBT was associated with poorer neurological outcomes, within a wide range of reported differences in the hemoglobin threshold to decide for RCBT in TBI patients. Restrictive RCBT strategy may be useful in moderate to severe TBI cases although the risk of anemia-induced cerebral injury needs further investigation regarding the risks and complications inherent to RCBT.
DOI: 10.6084/m9.figshare.17814638.v1
title: Stereotactic radiosurgery with immune checkpoint inhibitors for brain metastases: a meta-analysis study

description: Immune checkpoint inhibitors (ICIs) are an emerging tool in the treatment of brain metastases (BMs), Stereotactic radiosurgery (SRS), traditionally used for BMs, elicits an immune brain response and can act synergistically with ICIs. We aim to investigate the efficacy of ICI administered with SRS and determine the impact of timing on BM response. A systematical search was performed to identify potential studies concerning BMs managed with SRS alone or with SRS + ICI with relative timing administration (ICI concurrent with SRS, ICI nonconcurrent with SRS, SRS before ICI, SRS after ICI). The overall survival (OS), 12-month OS, local progression-free survival (LPFS), 12-month local brain control (LBC), distant progression-free survival (DPFS), 12-month distant brain control (DBC), and adverse events (intracranial hemorrhage, radionecrosis) were analyzed using the random-effects model. A total of 16 retrospective studies with 1356 BM patients were included. Compared to nonconcurrent therapy, concurrent therapy revealed a significantly longer OS (HR= 1.43; <i>p</i> = 0.008) and 12-months LBC (HR = 1.91; <i>p</i> = 0.04), a similar 12-months DBC (HR = 1.12; <i>p</i> = 0.547) and higher complication rate (<i>R</i> = 0.77; <i>p</i> = 0.346). Concurrent therapy leads to a significantly higher OS compared to ICI before SRS (HR = 2.55; <i>p</i> = 0.0003). The combination of SRS with ICI improves patients’ clinical and radiological outcomes. The effectiveness of the combination is subject to the identification of an optimal therapeutic window.
DOI: 10.6084/m9.figshare.14706958.v1
title: Case history on Epstein-Barr Virus-associated smooth muscle tumor (EBV-SMT) of cranio-cervical junction in an immunocompetent patient

description: Epstein-Barr virus-associated smooth muscle tumor (EBV-SMT) is a rare mesenchymal tumor that almost exclusively occurs in immunocompromised hosts. Here, we report a 75-year-old Taiwanese woman without definite immune-deficient history presenting with progressive occipital neuralgia, low cranial nerve deficits (CN9-12) and cervical (C1–C5) radiculopathy. Magnetic resonance imaging revealed a 4.5*4.0*6.7 cm infiltrating mass occupying posterior skull base and C1–C2 vertebra and C1–5 epidural extension with bone destruction and vertebral artery (VA) encasement. There was also a synchronous 2.7 cm tonsillar tumor. A two-stage operation for cranio-cervical tumor excision and stabilization was performed. Tumor was confirmed directly arising from VA intraoperatively. Pathology reported a spindle cell neoplasm and the diagnosis of EBV-SMT was confirmed by EBER (EBV-encoded small RNA) in situ hybridization. An immune survey and reconstruction should be conducted for patient with EBV-SMT. A near-total resection of tumor may be beneficial for local control, however, the role of surgical resection in treating CNS EBV-SMT remains to be determined.
DOI: 10.5281/zenodo.10107942
title: echeveria_elegans_zanfona_1.fasta.gz

description: echeveria_elegans_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.10107941
title: echeveria_elegans_zanfona_1.fasta.gz

description: echeveria_elegans_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.10107994
title: anabacerthia_variegaticeps_zanfona_1.fasta.gz

description: anabacerthia_variegaticeps_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.10107995
title: anabacerthia_variegaticeps_zanfona_1.fasta.gz

description: anabacerthia_variegaticeps_zanfona_1.fasta.gz
DOI: 10.6084/m9.figshare.24545587
title: <b>Deep learning artificial intelligence framework to optimize the adsorption capacity of carbonaceous material obtained from biomass waste: nonlinear approach and error analysis</b>

description: Data used for modeling purposes.
DOI: 10.34740/kaggle/dsv/6939718
title: Beijing Multi-Site Air-Quality Data
DOI: 10.34740/kaggle/dsv/6939770
title: Temperature and humidity