cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17151905
title: Supplementary Material for: The Association between Myopia and Primary Open-Angle Glaucoma: A Systematic Review and Meta-Analysis

description: Background: Previous studies identified myopia as a risk factor for primary open-angle glaucoma (POAG). However, recent studies have shown different results, the definitive relationship between myopia and POAG remains controversial. Objectives: To investigate the relationship between myopia and POAG. Methods: Published articles were searched from PubMed, Embase, and Scopus databases between 1970 and 2020. A pooled analysis of the ORs was performed using a random-effects model. Results: Data on the association between myopia and POAG, were obtained from 16 cross sectional studies, and the pooled OR was 2.26 (95% confidence interval [CI], 1.77 – 2.89, P &lt; 0.001) in random effects model (I2 = 86%; P &lt; 0.01). For the relationship of myopia and POAG progression, data from seven longitudinal cohort studies were included and the pooled OR was 0.85 (95% CI, 0.73 – 0.99, P = 0.042) in the random-effects model (I2 = 88%; P &lt; 0.01). Conclusion: Our findings demonstrated that myopia may be a risk factor associated with POAG and a possible protective factor for POAG progression. It may due to myopia with the presence of a lamina cribrosa defect slow down the visual field loss also POAG progression, further research for underlying mechanisms is still needed.
DOI: 10.3886/e100456v3-115340
title: Petition, Signature, and Response Data from "We the People"

description: On September 22, 2011, the White House launched "We the People" (petitions.whitehouse.gov), a site where people could create and sign petitions asking the president and his administration to do (or not do) various things. During the Obama administration, petitions that received over a certain number of signatures generally received a response from the White House. The Obama administration released bulk SQL dumps of the petition, signature, and response data periodically (generally quarterly). Three of those bulk SQL dumps are archived here.<br><br>The site remained live under the Trump administration, although the SQL dumps were no longer released. A project at Grinnell College collected data from the "We the People" API nightly and loaded it into a searchable online database (https://dasil.sites.grinnell.edu/political-science/we-the-people-data-explorer/). A bulk SQL dump of that database is also archived here. It contains essentially all petition, signature, and response data from the site's launch until it was discontinued by the Biden administration on January 20, 2021. Some data may be missing from the middle of the day on January 20, 2017. The data ends at approximately 1:45am EST on January 20, 2021.<br>Additional information about the data can be found here: https://petitions.trumpwhitehouse.archives.gov/developers/get-code <br><br>
DOI: 10.3886/e100456v3-115341
title: Petition, Signature, and Response Data from "We the People"

description: On September 22, 2011, the White House launched "We the People" (petitions.whitehouse.gov), a site where people could create and sign petitions asking the president and his administration to do (or not do) various things. During the Obama administration, petitions that received over a certain number of signatures generally received a response from the White House. The Obama administration released bulk SQL dumps of the petition, signature, and response data periodically (generally quarterly). Three of those bulk SQL dumps are archived here.<br><br>The site remained live under the Trump administration, although the SQL dumps were no longer released. A project at Grinnell College collected data from the "We the People" API nightly and loaded it into a searchable online database (https://dasil.sites.grinnell.edu/political-science/we-the-people-data-explorer/). A bulk SQL dump of that database is also archived here. It contains essentially all petition, signature, and response data from the site's launch until it was discontinued by the Biden administration on January 20, 2021. Some data may be missing from the middle of the day on January 20, 2017. The data ends at approximately 1:45am EST on January 20, 2021.<br>Additional information about the data can be found here: https://petitions.trumpwhitehouse.archives.gov/developers/get-code <br><br>
DOI: 10.5281/zenodo.6469615
title: Data set from "Impact of the Free-Pelvis innovation in very rigid braces for adolescents with idiopathic scoliosis: short-term results of a matched case-control study"

description: Dataset from a still non-published study titled "Impact of the Free-Pelvis innovation in very rigid braces for adolescents with idiopathic scoliosis: short-term results of a matched case-control study"
DOI: 10.5281/zenodo.6469614
title: Data set from "Impact of the Free-Pelvis innovation in very rigid braces for adolescents with idiopathic scoliosis: short-term results of a matched case-control study"

description: Dataset from a still non-published study titled "Impact of the Free-Pelvis innovation in very rigid braces for adolescents with idiopathic scoliosis: short-term results of a matched case-control study"
DOI: 10.21227/andr-8p28
title: Sample audios generated by SoundSticker

description: Sample audios
DOI: 10.5281/zenodo.6401685
title: Deleted

description: Old version
DOI: 10.5281/zenodo.3974633
title: Deleted

description: Old version
DOI: 10.5281/zenodo.6465284
title: Deleted

description: Old version
DOI: 10.5281/zenodo.6465283
title: Deleted

description: Old version
DOI: 10.5281/zenodo.6469628
title: Deleted

description: Old version
DOI: 10.5281/zenodo.6469625
title: Deleted

description: Old version
DOI: 10.6084/m9.figshare.19614255
title: Supplementary Material for: Criteria for Continuous Kidney Replacement Therapy Cessation in ICU Patients

description: <b><i>Introduction:</i></b> In intensive care unit (ICU) patients with acute kidney injury, specific recommendations to guide the decision to cease continuous kidney replacement therapy (CKRT) are lacking. <b><i>Methods:</i></b> We performed a survey to identify criteria currently used to cease CKRT in real-life clinical practice in the Netherlands. We used an online questionnaire with multiple choice questions designed with web-based software from SurveyMonkey. <b><i>Results:</i></b> We received 169 completed questionnaires from intensivists (<i>n</i> = 126) and nephrologists (<i>n</i> = 43). Essential determinants for the cessation of CKRT were a spontaneously increasing diuresis (indicated by 92% of the respondents), absence of fluid overload (indicated by 88% of the respondents), and improvement in creatinine clearance (indicated by 61% of the respondents; intensivists 56%; nephrologists 77%, <i>p</i> = 0.03). Most often mentioned cut-off values used for increase in diuresis were 0.25 and 0.5 mL/kg/h (35% and 33%, respectively). Actual CKRT cessation was often postponed until the filter clots or until circuit disconnection is needed because of patient transport for diagnostic or intervention procedures (indicated by 58% of the respondents). Expected discharge from the ICU was the most frequently reported determinant to switch from CKRT to hemodialysis (indicated by 67% of the respondents). <b><i>Conclusions:</i></b> CKRT cessation in clinical practice is mostly based on spontaneously increasing diuresis, absence of fluid overload, and improvement in creatinine clearance and is often delayed until filter clotting or disconnection of the circuit because of logistic reasons.
DOI: 10.6084/m9.figshare.19368530
title: GoFlagmatrices-Orthotrichaceae

description: GoFlag project: individual matrices obtained in Orthotricaceae. Two datasets: Full Sequences and Probe Only matrices.<br>
DOI: 10.6084/m9.figshare.19368530.v1
title: GoFlagmatrices-Orthotrichaceae

description: GoFlag project: individual matrices obtained in Orthotricaceae. Two datasets: Full Sequences and Probe Only matrices.<br>
DOI: 10.5281/zenodo.6469738
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.5281/zenodo.5681522
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.48370/ofd/v5as4l
title: Peniophora incarnata (Pers.) P.Karst., 2067

description: Fungarium Macromycetes
DOI: 10.5517/ccdc.csd.cc293lyz
title: CCDC 2118631: Experimental Crystal Structure Determination

description: Related Article: Yuji Kikukawa, Yui Sakamoto, Hikari Hirasawa, Yushi Kurimoto, Hiroya Iwai, Yoshihito Hayashi|2022|Cat.Sci.Tech.|12|2438|doi:10.1039/D1CY02103F
DOI: 10.5517/ccdc.csd.cc293lz0
title: CCDC 2118632: Experimental Crystal Structure Determination

description: Related Article: Yuji Kikukawa, Yui Sakamoto, Hikari Hirasawa, Yushi Kurimoto, Hiroya Iwai, Yoshihito Hayashi|2022|Cat.Sci.Tech.|12|2438|doi:10.1039/D1CY02103F
DOI: 10.5517/ccdc.csd.cc293m02
title: CCDC 2118633: Experimental Crystal Structure Determination

description: Related Article: Yuji Kikukawa, Yui Sakamoto, Hikari Hirasawa, Yushi Kurimoto, Hiroya Iwai, Yoshihito Hayashi|2022|Cat.Sci.Tech.|12|2438|doi:10.1039/D1CY02103F
DOI: 10.5281/zenodo.6469698
title: CH3CH2OCH3 conformer molecule 200 ps MD trajectory with energies and forces

description: Forces and Energies for 200 ps MD trajectory of OCH2C2H6 molecule by xTB/GFN-2, NVE ensemble -------------------------------------------------- MD params: temp = 300.0 K / 500.0 K<br> time = 200.0 ps<br> dump time = 10.0 fs<br> step = 0.4 fs SOAP params: species=["H", "C", "O"], periodic=False, rcut=5.0, sigma=0.5, nmax=5, lmax=5, average="outer" / "inner", crossover=True, dtype="float64", ------------------------------------------------ SOAP invariants were calculated with DScribe library (https://pypi.org/project/dscribe/1.2.1/) Energies and forces are in eV and eV/Angstrom Filenames are intended to be self-explanatory Dataset is intended to be used for machine learning algorithms tests.
DOI: 10.48370/ofd/navmj1
title: Peniophora incarnata (Pers.) P.Karst., 5222

description: Fungarium Macromycetes
DOI: 10.48370/ofd/xuy34q/dixjrd
title: Phellinus chrysoloma - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/xuy34q
title: Phellinus chrysoloma - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.14469/hpc/10375
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, dibutylether , TS PT

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10376
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, chloroform, OHN

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10377
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, DCM, starting from OH (non polar) =&gt;

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10378
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, toluene, TS for Proton transfer, IRC

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10379
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, toluene, OHN 1.3248/1.1635 G = -2893.379752

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10381
title: RAKQOJ, B3LYP+GD3+BJ/Def2-TZVPP, chloroform , TS

description: Gaussian 16 (C01) calculation
DOI: 10.48370/ofd/5a8cng/5bh3np
title: Phellinus conchatus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/5a8cng
title: Phellinus conchatus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/ygddem
title: Peniophora cinerea (Pers.) Cooke, 0409

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.6469765
title: CH3CH2OCH3 conformer molecule 200 ps MD trajectory with energies and forces

description: Forces and Energies for 200 ps MD trajectory of OCH2C2H6 molecule by xTB/GFN-2, NVE ensemble -------------------------------------------------- MD params: temp = 300.0 K / 500.0 K<br> time = 200.0 ps<br> dump time = 10.0 fs<br> step = 0.4 fs SOAP params: species=["H", "C", "O"], periodic=False, rcut=5.0, sigma=0.5, nmax=5, lmax=5, average="outer" / "inner", crossover=True, dtype="float64", ------------------------------------------------ SOAP invariants were calculated with DScribe library (https://pypi.org/project/dscribe/1.2.1/) Energies and forces are in eV and eV/Angstrom Filenames are intended to be self-explanatory Dataset is intended to be used for machine learning algorithms tests.
DOI: 10.5281/zenodo.6469697
title: CH3CH2OCH3 conformer molecule 200 ps MD trajectory with energies and forces

description: Forces and Energies for 200 ps MD trajectory of OCH2C2H6 molecule by xTB/GFN-2, NVE ensemble -------------------------------------------------- MD params: temp = 300.0 K / 500.0 K<br> time = 200.0 ps<br> dump time = 10.0 fs<br> step = 0.4 fs SOAP params: species=["H", "C", "O"], periodic=False, rcut=5.0, sigma=0.5, nmax=5, lmax=5, average="outer" / "inner", crossover=True, dtype="float64", ------------------------------------------------ SOAP invariants were calculated with DScribe library (https://pypi.org/project/dscribe/1.2.1/) Energies and forces are in eV and eV/Angstrom Filenames are intended to be self-explanatory Dataset is intended to be used for machine learning algorithms tests.
DOI: 10.48370/ofd/5dbrjh/czbz9x
title: Phellinus igniarius - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/5dbrjh
title: Phellinus igniarius - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/p9rpao
title: Peniophora cinerea (Pers.) Cooke, 1711

description: Fungarium Macromycetes
DOI: 10.48370/ofd/6dffht/lig2c0
title: Phellinus laevigatus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/6dffht
title: Phellinus laevigatus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.5281/zenodo.6460983
title: Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?

description: Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?"
DOI: 10.5281/zenodo.6460982
title: Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?

description: Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?"
DOI: 10.48370/ofd/vbzws7/biyths
title: Phellinus pini - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/vbzws7
title: Phellinus pini - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.6084/m9.figshare.19573084
title: FP2BERT_embedding

description: Datasets with pre-trained embedding
DOI: 10.6084/m9.figshare.19573084.v1
title: FP2BERT_embedding

description: Datasets with pre-trained embedding
DOI: 10.48370/ofd/gb6phx/lziidq
title: Phellinus pomaceus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/gb6phx
title: Phellinus pomaceus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/v1o46v
title: Peniophora cinerea (Pers.) Cooke, 2702

description: Fungarium Macromycetes
DOI: 10.48370/ofd/itnzro/ojehy1
title: Phellinus populinus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/itnzro
title: Phellinus populinus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/v0fyik/hqlv3v
title: Phellinus punctatus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/v0fyik
title: Phellinus punctatus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/2egiqr
title: Peniophora limitata (Chaillet ex Fr.) Cooke, 4690

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.6378869
title: Potential energy surfaces for HCCNCS and DCCNCS

description: Molpro restart files (ASCII compressed) for the XSURF program of the potential energy surfaces for HCCNCS AND DCCNCS. The expansion point of these surfaces is the 2nd order transition state of the linear structure. Vibrational structure calculations based on these surfaces are reported in "A combined computational and experimental study on the vibrational structure of ethynyl isothiocyanate, HCCNCS, a molecule with a Champagne bottle potential" (https://doi.org/10.1016/j.jms.2022.111626).
DOI: 10.5281/zenodo.6378868
title: Potential energy surfaces for HCCNCS and DCCNCS

description: Molpro restart files (ASCII compressed) for the XSURF program of the potential energy surfaces for HCCNCS AND DCCNCS. The expansion point of these surfaces is the 2nd order transition state of the linear structure. Vibrational structure calculations based on these surfaces are reported in "A combined computational and experimental study on the vibrational structure of ethynyl isothiocyanate, HCCNCS, a molecule with a Champagne bottle potential" (https://doi.org/10.1016/j.jms.2022.111626).
DOI: 10.48370/ofd/wiodwk/5adnj1
title: Phellinus ribis - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/wiodwk
title: Phellinus ribis - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/jd8be4/edh2rr
title: Phellinus robustus - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/jd8be4
title: Phellinus robustus - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.24352/ub.ovgu-2022-001
title: Supplementary data to: An open numerical model for the investigation of flow environments as experienced by freshwater fish

description: This data set comprises the supplementary materials of a benchmark case of the flow around a fish shaped body for numerical ecohydraulic and biological studies including a validated numerical model. The set comprises both experimental and numerical data. Flow measurements of a 3D printed fish shaped body were conducted with a 2D LDA device. The data set also includes a computational fluid dynamics model validated against the LDA data. The numerical model is based on the open source software tool OpenFOAM. All settings for experiments and the simulation case file are included for further research.
DOI: 10.48370/ofd/unanly
title: Peniophora nuda (Fr.) Bres., 2586

description: Fungarium Macromycetes
DOI: 10.48370/ofd/8sjuvk/uikdec
title: Phellinus tremulae - ekstrakt metanolowy.pdf

description: :unav
DOI: 10.48370/ofd/8sjuvk
title: Phellinus tremulae - ekstrakt metanolowy

description: ekstrakt metanolowy
DOI: 10.48370/ofd/60mf1z
title: Peniophora pithya (Pers.) J.Erikss., 3322

description: Fungarium Macromycetes
DOI: 10.25345/c5h98zh6h
title: MassIVE MSV000089275 - GNPS MT trial anticancer activity
title: GNPS MT trial anticancer activity for creating bioactivity based molecular networking and processing in Cytoscape platform
DOI: 10.21227/q33d-5q17
title: dataset of tongji hospital

description: A shortage of beds and cross-infection in hospitals due to patient crowding and overloading during the COVID-19 pandemic necessitate the use of telemedicine over face-to-face treatment. This study used statistical analysis to evaluate the impact of treatment choice among hospitals, patients, and the government to encourage them to employ telemedicine to avoid overload risk in the IoT environment during the pandemic by analyzing data from Tongji Hospital of Wuhan, China from January to September 2020. We then analyzed the patients’ choice of medical treatment, evolution process, and influencing factors of the corresponding hospital overload risk by transforming the game model into a cusp catastrophe model. Finally, a tripartite cooperative game model was used to establish a cooperative mechanism in which patients, hospitals, and the government jointly accepted telemedicine to avoid overload risks.
DOI: 10.6084/m9.figshare.15082042.v3
title: A Dictyostelium model for BPAN disease reveals a functional relationship between the WDR45/WIPI4 homolog Wdr45l and Vmp1 in the regulation of autophagy-associated PtdIns3P and ER stress

description: PROPPINs are conserved PtdIns3P-binding proteins required for autophagosome biogenesis that fold into a characteristic group of seven-bladed beta-propellers. Mutations in WDR45/WIPI4, a human member of this family, lead to BPAN, a rare form of neurodegeneration. We have generated mutants for the two PROPPIN proteins present in the model system <i>Dictyostelium discoideum</i> (Atg18 and Wdr45l) and characterized their function. Lack of Wdr45l greatly impairs autophagy, while Atg18 only causes subtle defects in the maturation of autolysosomes. The strong phenotype of the Wdr45l mutant is strikingly similar to that observed in <i>Dictyostelium</i> cells lacking Vmp1, an ER protein required for omegasome formation. Common phenotypes include impaired growth in axenic medium, lack of aggregation, and local enrichment of PtdIns3P as determined by the use of lipid reporters. In addition, Vmp1 and Wdr45l mutants show a chronically active response to ER stress. For both mutants, this altered PtdIns3P localization can be prevented by the additional mutation of the upstream regulator Atg1, which also leads to recovery of axenic growth and reduction of ER stress. We propose that, in addition to an autophagy defect, local autophagy-associated PtdIns3P accumulation might contribute to the pathogenesis of BPAN by disrupting ER homeostasis. The introduction of BPAN-associated mutations in <i>Dictyostelium</i> Wdr45l reveals the impact of pathogenic residues on the function and localization of the protein.
DOI: 10.6084/m9.figshare.14790043.v1
title: The spectrum of neurodevelopmental, neuromuscular and neurodegenerative disorders due to defective autophagy

description: Primary dysfunction of autophagy due to Mendelian defects affecting core components of the autophagy machinery or closely related proteins have recently emerged as an important cause of genetic disease. This novel group of human disorders may present throughout life and comprises severe early-onset neurodevelopmental and more common adult-onset neurodegenerative disorders. Early-onset (or congenital) disorders of autophagy often share a recognizable “clinical signature,” including variable combinations of neurological, neuromuscular and multisystem manifestations. Structural CNS abnormalities, cerebellar involvement, spasticity and peripheral nerve pathology are prominent neurological features, indicating a specific vulnerability of certain neuronal populations to autophagic disturbance. A typically biphasic disease course of late-onset neurodegeneration occurring on the background of a neurodevelopmental disorder further supports a role of autophagy in both neuronal development and maintenance. Additionally, an associated myopathy has been characterized in several conditions. The differential diagnosis comprises a wide range of other multisystem disorders, including mitochondrial, glycogen and lysosomal storage disorders, as well as ciliopathies, glycosylation and vesicular trafficking defects. The clinical overlap between the congenital disorders of autophagy and these conditions reflects the multiple roles of the proteins and/or emerging molecular connections between the pathways implicated and suggests an exciting area for future research. Therapy development for congenital disorders of autophagy is still in its infancy but may result in the identification of molecules that target autophagy more specifically than currently available compounds. The close connection with adult-onset neurodegenerative disorders highlights the relevance of research into rare early-onset neurodevelopmental conditions for much more common, age-related human diseases.