cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14939152.v1
title: Recent selection of candidate genes for mammal domestication in Europeans and language change in Europe: a hypothesis

description: Human evolution resulted from changes in our biology, behaviour, and culture. One source of these changes has been hypothesised to be our self-domestication (that is, the development in humans of features commonly found in domesticated strains of mammals, seemingly as a result of selection for reduced aggression). Signals of domestication, notably brain size reduction, have increased in recent times. In this paper, we compare whole-genome data between the Late Neolithic/Bronze Age individuals and modern Europeans. We show that genes associated with mammal domestication and with neural crest development and function are significantly differently enriched in nonsynonymous single nucleotide polymorphisms between these two groups. We hypothesise that these changes might account for the increased features of self-domestication in modern humans and, ultimately, for subtle recent changes in human cognition and behaviour, including language.
DOI: 10.6084/m9.figshare.15028635
title: Genetic diversity, forensic characteristics and phylogenetic analysis of the Qiongzhong aborigines residing in the tropical rainforests of Hainan Island via 19 autosomal STRs

description: The genetic landscape of the Qiongzhong aborigines, who reside in “the Heart of Hainan,” is still unclear. The Goldeneye™ DNA ID System 20 A is available for forensic and population genetics applications. To obtain genetic polymorphisms of 19 autosomal STR loci in the Qiongzhong aborigines, and to explore the genetic relationships with a total of 69,132 people from forty-five populations. Genotype data on 19 autosomal STRs were collected from 724 Qiongzhong aborigines and phylogenetic relationships were conducted by multidimensional scaling analysis (MDS), principal component analysis (PCA) and neighbor-joining (N-J) phylogenetic tree construction. No evidence of deviation from Hardy-Weinberg equilibrium was identified. A total of 233 distinct alleles were observed with allele frequencies ranging from 0.0007 to 0.5375. The combined power of discrimination (CPD) and combined power of exclusion (CPE) for the 19 autosomal STR loci were 1–8.28 × 10<sup>–34</sup> and 0.999999987, respectively. Our phylogenetic results demonstrated that (a) the populations of Southeast Asian countries have thorough integrations with southern China in terms of ethnicity and genetics due to long-term cultural and trade exchanges, and (b) based on genetic and linguistic analysis, the Qiongzhong aborigines have a close relationship with Fujian Han Chinese.HighlightsThe STR landscape of Qiongzhong aborigines inhabited in Hainan tropical rainforests was depicted by 19 autosomal STRs.A total of 69,132 people from forty-five populations were selected for a more extensive examination of genetic similarities and differences by multivariate statistical methods (MDS, PCA and N-J tree construction).The genetic analyses indicated that the populations of Southeast Asian countries are very genetically close to southern Chinese populations.From the genetic and linguistic perspective, the Qiongzhong aborigines have a close relationship with Han Chinese from Fujian Province. The STR landscape of Qiongzhong aborigines inhabited in Hainan tropical rainforests was depicted by 19 autosomal STRs. A total of 69,132 people from forty-five populations were selected for a more extensive examination of genetic similarities and differences by multivariate statistical methods (MDS, PCA and N-J tree construction). The genetic analyses indicated that the populations of Southeast Asian countries are very genetically close to southern Chinese populations. From the genetic and linguistic perspective, the Qiongzhong aborigines have a close relationship with Han Chinese from Fujian Province.
DOI: 10.6084/m9.figshare.15097121.v3
title: Population genetic data for 12 X-STR loci in the Central Saudi region using investigator Argus X-12 amplification kit

description: X-chromosome short tandem repeat (X-STR) markers are important in forensic identity investigations and kinship analysis. In the current study, the distribution of 12 X-STR loci located in four linkage groups was evaluated using Investigator<sup>®</sup> Argus X-12 Amplification Kit in 200 unrelated healthy individuals (105 males and 95 females) from the central region of Saudi Arabia in order to develop an allelic frequency database for the markers included in the kit. DXS10146 locus was the most informative with 21 alleles, while DXS8378 locus was the least with five alleles. Forensic parameters showed that all X-STRs loci, either as individual markers or as linkage groups, provide genetic information with high discrimination that is appropriate for forensic purposes with polymorphism information content (PIC), power of exclusion (PE), and paternity index (PI) varying from 0.61211 to 0.917979, 0.38722 to 0.842949, and 0.038416 to 0.16367, respectively. The pairwise genetic distance fixation index (Fst) results showed that the Saudi population is genetically closer to the Egyptian and Emirati populations and distant to the Turkish population. The current study revealed that Investigator<sup>®</sup> Argus 12 X-STR kit would support the forensic application, kinship testing involving female offspring, and human identification in the Saudi population.
DOI: 10.6084/m9.figshare.15097121.v2
title: Population genetic data for 12 X-STR loci in the Central Saudi region using investigator Argus X-12 amplification kit

description: X-chromosome short tandem repeat (X-STR) markers are important in forensic identity investigations and kinship analysis. In the current study, the distribution of 12 X-STR loci located in four linkage groups was evaluated using Investigator<sup>®</sup> Argus X-12 Amplification Kit in 200 unrelated healthy individuals (105 males and 95 females) from the central region of Saudi Arabia in order to develop an allelic frequency database for the markers included in the kit. DXS10146 locus was the most informative with 21 alleles, while DXS8378 locus was the least with five alleles. Forensic parameters showed that all X-STRs loci, either as individual markers or as linkage groups, provide genetic information with high discrimination that is appropriate for forensic purposes with polymorphism information content (PIC), power of exclusion (PE), and paternity index (PI) varying from 0.61211 to 0.917979, 0.38722 to 0.842949, and 0.038416 to 0.16367, respectively. The pairwise genetic distance fixation index (Fst) results showed that the Saudi population is genetically closer to the Egyptian and Emirati populations and distant to the Turkish population. The current study revealed that Investigator<sup>®</sup> Argus 12 X-STR kit would support the forensic application, kinship testing involving female offspring, and human identification in the Saudi population.
DOI: 10.48370/ofd/bwtmyt
title: Myodes glareolus - 125602, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/joanij/x2maua
title: m-2425.tif

description: :unav
DOI: 10.48370/ofd/tqm5ry
title: Myodes glareolus - 165744, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-04-26, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/joanij/nrxjuh
title: FMW Antrodiella serpula (P. Karsten) Spirin & Niemelä M-2425.JPG

description: :unav
DOI: 10.48370/ofd/luk7dl
title: Myodes glareolus - 164539, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1996-09-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/joanij/kjdgiq
title: FMW Antrodiella serpula (P. Karsten) Spirin & Niemelä M-2425 (2).JPG

description: :unav
DOI: 10.48370/ofd/joanij
title: Jamkóweczka żółtawa (Antrodiella serpula (P. Karsten) Spirin Niemelä), 2425

description: Grzyby makromycetes
DOI: 10.48370/ofd/1fjhsq
title: Myodes glareolus - 9480, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-06-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/oycoga
title: Myodes glareolus - 83280, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-10-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/eucxpw
title: Myodes glareolus - 19272, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1957-11-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/whrs7w
title: Myodes glareolus - 93949, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-10-01, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/atagea
title: Myodes glareolus - 74174, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/i55730
title: Myodes glareolus - 46222, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/pakrmb
title: Myodes glareolus - 97658, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1971-05-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/rvlah7
title: Myodes glareolus - 14960, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/ykmc-6p79
title: Abdominal pregnancy - Female, 30 - Tissue image [5260730006536241]

description: This is the histopathological image of PLACENTA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: Primipara, Hbd 42Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XV - Pregnancy, childbirth and the puerperiumDiagnosis: Abdominal pregnancyResult of the histopathological examination: Mature placenta, with calcifications, villous fibrosis and areas of intervillar thrombosis.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: PLACENTATissue: PlacentaType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4cax-wq72
title: Lobular carcinoma in situ - Female, 44 - Tissue image [11300630022684341]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 44Clinical description: Left breast tumour. LN (lobular neoplasia)Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Lobular carcinoma in situResult of the histopathological examination: There are numerous LCIS (Lobular carcinoma in situ / LN) foci, involving multifocally TDLU structures and confluent lesions of the adenosis type, in the samples of the dysplastic plate. The population of neoplastic lobular cells also involves some of the ductal structures, locally forming solid nests in them (florid LCIS). Intralobular neoplasia is present in all sections of the entire dysplastic plate.
Positive staining for  CK  PAN (+)Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/viwnln
title: Myodes glareolus - 110227, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1973-07-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/kffn-y775
title: Pemphigoid - Female, 88 - Tissue image [12060630017628501]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 88Clinical description: Clinically suspicious of bullous skin disease.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XII - Diseases of the skin and subcutaneous tissueDiagnosis: PemphigoidResult of the histopathological examination: Consistent with pemphigoid. The skin shows non-acantholythic, subepidermal blister with the presence of  neutrophils and eosinophils.Sample:Material: FFPECollecting method: Surgical biopsyTopography: SKINOrgan: SKINTissue: Skin of abdominal wallType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/yfe3-9675
title: Diffuse large B-cell lymphoma, NOS - Male, 63 - Tissue image [5030730017674161]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 63Clinical description: Enlarged cervical lymph node.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Diffuse large B-cell lymphoma, NOSResult of the histopathological examination: Diffuse large B-cell lymphoma (DLBCL).

IHC: CD20+, CD3(-), bcl2+, bcl6 (+/-), CD30+, CD10(-), Ki67 approximately 70%, CD138(-), MUM1(-), EBER(-).Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Cervical lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/t9sk-6213
title: Mucinous carcinoma - Female, 73 - Tissue image [3150630013123201]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 73Clinical description: Central tumor of left breast, diameter 1 cm. Core needle biopsy: mucinous carcinoma of breast.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: Mucinous carcinomaResult of the histopathological examination: Mucinous carcinoma of breast.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Central portion of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/z1pp-rk88
title: Granulosa cell tumor, adult type - Female, 49 - Tissue image [9230729557262651]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 49Clinical description: Tumor of left ovary. 8 cm cystic tumor of left ovary on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SPECIALIZED GONADAL NEOPLASMSDiagnosis: Granulosa cell tumor, adult typeResult of the histopathological examination: Granulosa cell tumor, adult type: Inhibin+, Calretinin+, WT1+, CKAE1/AE3-, CK7-, Ki-67 10%.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/him0rw
title: Myodes glareolus - 15103, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/bya7-8m45
title: Invasive breast carcinoma of no special type - Female, 62 - Tissue image [5020730020705601]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: History of Paget disease. 16x12mm hipoechoic tumor on ultrasound. Core needle biopsy: invasive breast carcinoma. History of neoadjuvant chemotherapy.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Invasive breast carcinoma of no special typeResult of the histopathological examination: Invasive breast carcinoma- NHG3. Axillary lymph nodes metastases (4/11 lymph nodes). 
Lymph node metastasis.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Axillary lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/vay2cj
title: Myodes glareolus - 10912, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/6kzm-7c40
title: Cystadenofibroma, NOS - Female, 57 - Tissue image [10040729541209651]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Tumor of right ovary. 30 x 25 mm solid and cystic tumor on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROEPITHELIAL NEOPLASMSDiagnosis: Cystadenofibroma, NOSResult of the histopathological examination: Cystadenofibroma.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/0n8f-nd32
title: Adenocarcinoma, NOS - Female, 84 - Tissue image [2270630026326861]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 84Clinical description: Palpable tumor of right breast. 14 x 10 mm tumor on ultrasound. Core needle biopsy: invasive breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Adenocarcinoma, NOSResult of the histopathological examination: Invasive breast carcinoma (mixed type: NOS and tubular): NHG1 (1+2+1: 3 mitoses per 10 HPF). p63 - in carcinoma nests, ER+, PR+, HER2 1+, Ki-67 10%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/IHCStaining: Not applicableAntibody: PRTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/bs96-q609
title: Other chronic tubulo-interstitial nephritis - Female, 61 - Tissue image [10040729541209191]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 61Clinical description: Tumor of right kidney.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XIV - Diseases of the genitourinary systemDiagnosis: Other chronic tubulo-interstitial nephritisResult of the histopathological examination: Xanthogranulomatous pyelonephritis - replacement of renal parenchyma with CD68+ foamy histiocytes (CKAE1/AE3-).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/oekktk
title: Myodes glareolus - 8416, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-06-02, in: Białowieża National Park, Poland. Material type: