cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pn7hys
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fumaria judaica Boiss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 417 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297655-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwd4d3
title: Occurrence Download

description: A dataset containing 3414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thymus nervosus J.Gay ex Willk.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3414 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287221-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnp849
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colchicum raddeanum (Regel) K.Perss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152228-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntmcfb
title: Occurrence Download

description: A dataset containing 4327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persicaria pensylvanica (L.) M.Gómez",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4327 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002269-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvps4v
title: Occurrence Download

description: A dataset containing 68036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triglochin maritima L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68036 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286673-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkppfp
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isognomon perna",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 218 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000526-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18533102
title: ECHIDNA: Extreme Climate Historical and Future Indices Data under Numerous Approaches across Major Chinese River Basins Based on CMIP6 Multi-Model Ensemble(reference period) (Part 2/2)

description: Bulk-uploaded extreme climate indices outputs generated by icclim (reference).
DOI: 10.5281/zenodo.18533103
title: ECHIDNA: Extreme Climate Historical and Future Indices Data under Numerous Approaches across Major Chinese River Basins Based on CMIP6 Multi-Model Ensemble(reference period) (Part 2/2)

description: Bulk-uploaded extreme climate indices outputs generated by icclim (reference).
DOI: 10.5281/zenodo.18533725
title: Artificial intelligence-informed integrated agricultural management enhances soil carbon formation efficiency globally
DOI: 10.5281/zenodo.18533726
title: Artificial intelligence-informed integrated agricultural management enhances soil carbon formation efficiency globally
DOI: 10.15468/dl.hfm5z4
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scutiger chintingensis"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002074-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18503246
title: Tilt-to-length noise simulated data
DOI: 10.5281/zenodo.18503247
title: Tilt-to-length noise simulated data
DOI: 10.71853/rmgs-b781
title: MD libraries for publication "Interactions of Laurylated and Myristoylated KR12 Fragment of the LL37 peptide with Polyoxidovanadates"

description: <p>AMBER MD package compatible residue libraries used in the publication https://doi.org/10.3390/molecules30071589</p>
DOI: 10.5281/zenodo.18530700
title: Evaluating Large Language Models on the 2026 Korean CSAT Mathematics Exam: Measuring Mathematical Ability in a Zero–Data-Leakage Setting

description: This dataset contains inference outputs from evaluating 36+ state-of-the-art large language models (LLMs) on the 2026 Korean College Scholastic Ability Test (CSAT) Mathematics section (홀수형, Odd Type). The exam consists of 46 problems: 22 common problems (Math I & II) and 24 elective problems (8 each from Probability & Statistics, Calculus, and Geometry).

The dataset includes 347 TSV files (3.72 MB total):





338 per-model result files, organized by experimental condition:



Input modality: text_only, image_only, text_fig (text + figure)

Prompt language: English (en), Korean (ko)

Extended thinking: enabled (on), disabled (off)





9 ablation summary tables aggregating accuracy, score, latency, token usage, and cost across all conditions.



Each result file records per-problem: model answer, correctness, response latency, prompt/completion token counts, and timestamps.

Models evaluated include: OpenAI GPT-5 family (GPT-5, GPT-5-Mini, GPT-5-Nano, GPT-5-Codex), Anthropic Claude (Opus 4.1, Sonnet 4.5, Haiku 4.5), Google Gemini 2.5 (Pro, Flash), xAI Grok 4 (Grok 4, Grok 4-Fast), Qwen3-VL, Meta Llama 4 Maverick, DeepSeek R1/V3, Mistral Magistral, Kimi K2, MiniMax M2, Nvidia Nemotron, GLM-4.6, and others.

Note on original exam data: The original CSAT exam problems (text, images, and answer keys) are not included in this deposit due to copyright restrictions by the Korea Institute for Curriculum and Evaluation (KICE). The exam materials can be obtained from the official KICE website (https://www.suneung.re.kr).
DOI: 10.5281/zenodo.18530701
title: Evaluating Large Language Models on the 2026 Korean CSAT Mathematics Exam: Measuring Mathematical Ability in a Zero–Data-Leakage Setting

description: This dataset contains inference outputs from evaluating 36+ state-of-the-art large language models (LLMs) on the 2026 Korean College Scholastic Ability Test (CSAT) Mathematics section (홀수형, Odd Type). The exam consists of 46 problems: 22 common problems (Math I & II) and 24 elective problems (8 each from Probability & Statistics, Calculus, and Geometry).

The dataset includes 347 TSV files (3.72 MB total):





338 per-model result files, organized by experimental condition:



Input modality: text_only, image_only, text_fig (text + figure)

Prompt language: English (en), Korean (ko)

Extended thinking: enabled (on), disabled (off)





9 ablation summary tables aggregating accuracy, score, latency, token usage, and cost across all conditions.



Each result file records per-problem: model answer, correctness, response latency, prompt/completion token counts, and timestamps.

Models evaluated include: OpenAI GPT-5 family (GPT-5, GPT-5-Mini, GPT-5-Nano, GPT-5-Codex), Anthropic Claude (Opus 4.1, Sonnet 4.5, Haiku 4.5), Google Gemini 2.5 (Pro, Flash), xAI Grok 4 (Grok 4, Grok 4-Fast), Qwen3-VL, Meta Llama 4 Maverick, DeepSeek R1/V3, Mistral Magistral, Kimi K2, MiniMax M2, Nvidia Nemotron, GLM-4.6, and others.

Note on original exam data: The original CSAT exam problems (text, images, and answer keys) are not included in this deposit due to copyright restrictions by the Korea Institute for Curriculum and Evaluation (KICE). The exam materials can be obtained from the official KICE website (https://www.suneung.re.kr).
DOI: 10.5281/zenodo.15867955
title: Unveiling the biodiversity of large DNA viruses in intertidal mudflats via metagenomics

description: The study dataset contains metagenome-assembled LDV genomes, LDV gene and protein sequences, and the files for phylogenetic and AAI analyses.

For any other dataset/analysis inquiries, please contact me: jimengzhi@mail.sdu.edu.cn.

The R code for this manuscript can be obtained from https://github.com/MengzhiJ.
DOI: 10.5281/zenodo.18154325
title: Unveiling the biodiversity of large DNA viruses in intertidal mudflats via metagenomics

description: The study dataset contains metagenome-assembled LDV genomes, LDV gene and protein sequences, and the files for phylogenetic and AAI analyses.

For any other dataset/analysis inquiries, please contact me: jimengzhi@mail.sdu.edu.cn.

The R code for this manuscript can be obtained from https://github.com/MengzhiJ.
DOI: 10.15468/dl.wzk8ka
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malawi",
 "DatasetKey is BID-Malawi-Arctiidae-Biodiversity-Data",
 "Year 2006-2026"
 ]
}

 The dataset includes 45 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002076-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.71853/3m0w-de41
title: PDB structures of oligosaccharides for publication "Selective inhibition of cathepsin S elastolytic activity by exopolysaccharides from deep-sea hydrothermalbacteria"

description: <p>Desulfated infernan and diabolican oligosaccharide PDB structures used in the publication https://doi.org/10.1016/j.carbpol.2025.123968</p>
DOI: 10.5281/zenodo.18500657
title: Human and mouse reference genomes plus annotations for RICO (rDNA copy number pipeline)

description: This dataset contains the reference files required to run the RICO pipeline for estimating ribosomal DNA (rDNA) copy number (CN) and methylation from long-read Oxford Nanopore sequencing data.

The tar.gz includes reference data for both human and mouse samples.

Contents:



Human:



GRCh38 reference genome with five concatenated rDNA repeats (rDNA reference used: KY962518.1)

rDNA gene annotation BED file

Single-copy gene (SCG) BED panels (SCG-1, SCG-2, SCG-3)



Mouse:



GRCm39 reference genome with five concatenated rDNA repeats (rDNA reference used: BK000964.3)

rDNA gene annotation BED file

SCG BED panel




These reference files are required for running the RICO pipeline:https://github.com/comprna/RICO

The reference bundle is distributed as a compressed tar archive containing the full ref/ directory.
DOI: 10.5281/zenodo.18500656
title: Human and mouse reference genomes plus annotations for RICO (rDNA copy number pipeline)

description: This dataset contains the reference files required to run the RICO pipeline for estimating ribosomal DNA (rDNA) copy number (CN) and methylation from long-read Oxford Nanopore sequencing data.

The tar.gz includes reference data for both human and mouse samples.

Contents:



Human:



GRCh38 reference genome with five concatenated rDNA repeats (rDNA reference used: KY962518.1)

rDNA gene annotation BED file

Single-copy gene (SCG) BED panels (SCG-1, SCG-2, SCG-3)



Mouse:



GRCm39 reference genome with five concatenated rDNA repeats (rDNA reference used: BK000964.3)

rDNA gene annotation BED file

SCG BED panel




These reference files are required for running the RICO pipeline:https://github.com/comprna/RICO

The reference bundle is distributed as a compressed tar archive containing the full ref/ directory.
DOI: 10.15468/dl.9jqanx
title: Occurrence Download

description: A dataset containing 56633 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= 37.42857426825602
 AND decimallatitude &lt;= 41.89415215079384
 AND decimallongitude &gt;= 120.88465576751481
 AND decimallongitude &lt;= 131.86964455197568
 AND GBIF_Within('POLYGON ((131.869645 37.428574, 131.869645 41.894152, 120.884656 41.894152, 120.884656 37.428574, 131.869645 37.428574))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 56633 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002073-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18533994
title: Ipseity Daily Data

description: At what rate do individuals say they are X?

Begining on 2025-07-08, I surveyed a small random sample of American adults on a daily cadence.  They responded to many items of the form: Does <signifier> describe you today?

The file ipseity-daily-aggregated.csv in this repository contains the aggregated results through 2025-07-28.  The columns are as follows:



signifier - a word, phrase or emoji

yes_count - the number of respondents who answered yes (aggregated all-time).

no_count - the number of respondents who answered no (aggregated all-time).

prevalence_per_10k - an estimate of the prevalence per 10,000.  If we were to survey 10,000 American adults, how many would we expect to respond yes to this signifier?  The number is calculated as yes_count / (yes_count + no_count) * 10,000.

earliest_obs_date - this date represents the first time this particular signifier was ever displayed to a respondent.  Signifiers are chosen with stochasticity from a long list; new signifiers are sometimes added, old signifiers are sometimes deleted, and a signifier may be moved higher or lower in priority for sampling.

latest_obs_date - the date closest to the present date on which signifier was most recently presented to a respondent.


Version created on 2026-02-09 — cumulative data.
DOI: 10.15468/dl.zp4yst
title: Occurrence Download

description: A dataset containing 2259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gavia immer"
 ]
}

 The dataset includes 2259 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002077-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4kbrm
title: Occurrence Download

description: A dataset containing 520 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Philippine Eagle Foundation Occurrence Records"
 ]
}

 The dataset includes 520 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002078-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29661731
title: Long-term Brown Bear (<i>Ursus arctos</i>) Filed Sign Survey Dataset, Teshio Experimental Forest, Hokkaido University, northern Hokkaido, Japan (1976–2015)<b>, </b>during a wildlife management policy shift. This dataset has been published in <i>Ecological Research</i> as a data paper (Takafumi et al., 2026).

description: This dataset comprises long-term records of brown bear (<i>Ursus arctos</i>) field signs collected in the Teshio Experimental Forest Hokkaido University (TEF), northern Hokkaido, Japan, between 1976 and 2015. Field surveys were conducted annually during July and August along predefined routes that followed streams and forest roads across approximately 22,500 hectares of mixed forest. Observers recorded brown bear filed sings, including feeding signs, footprints, and scats.The original paper-based survey logs, which described both route characteristics and observed signs, were digitized and georeferenced into shapefile format. In total, the dataset includes 2,421 geotagged field sign records (1145 feeding signs, 964 footprints, and 312 scats) collected along 9,890 km of surveyed routes, representing approximately 3,400 person-days of effort.Importantly, the study period spans both the enforcement and subsequent discontinuation of the Spring Bear-culling Program that was in effect until 1990. This context makes the dataset especially valuable for exploring the long-term ecological consequences of wildlife management practices.Each record contains spatial and temporal metadata, and in many cases, additional details such as the size of footprints or the contents of scats. These data provide an important foundation for understanding temporal trends in population status, habitat use, and foraging behavior of brown bears under shifting management regimes and environmental conditions.
DOI: 10.6084/m9.figshare.29661731.v1
title: Long-term Brown Bear (<i>Ursus arctos</i>) Filed Sign Survey Dataset, Teshio Experimental Forest, Hokkaido University, northern Hokkaido, Japan (1976–2015)<b>, </b>during a wildlife management policy shift. This dataset has been published in <i>Ecological Research</i> as a data paper (Takafumi et al., 2026).

description: This dataset comprises long-term records of brown bear (<i>Ursus arctos</i>) field signs collected in the Teshio Experimental Forest Hokkaido University (TEF), northern Hokkaido, Japan, between 1976 and 2015. Field surveys were conducted annually during July and August along predefined routes that followed streams and forest roads across approximately 22,500 hectares of mixed forest. Observers recorded brown bear filed sings, including feeding signs, footprints, and scats.The original paper-based survey logs, which described both route characteristics and observed signs, were digitized and georeferenced into shapefile format. In total, the dataset includes 2,421 geotagged field sign records (1145 feeding signs, 964 footprints, and 312 scats) collected along 9,890 km of surveyed routes, representing approximately 3,400 person-days of effort.Importantly, the study period spans both the enforcement and subsequent discontinuation of the Spring Bear-culling Program that was in effect until 1990. This context makes the dataset especially valuable for exploring the long-term ecological consequences of wildlife management practices.Each record contains spatial and temporal metadata, and in many cases, additional details such as the size of footprints or the contents of scats. These data provide an important foundation for understanding temporal trends in population status, habitat use, and foraging behavior of brown bears under shifting management regimes and environmental conditions.
DOI: 10.15468/dl.bcmcgw
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "TaxonKey is Cassipourea rotundifolia"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002079-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18534103
title: THE SIGNIFICANCE OF MEDICAL BLOGS IN THE MODERN HEALTHCARE SYSTEM: COMMUNICATIVE, EDUCATIONAL, AND REPUTATIONAL ASPECTS

description: This article presents a multi-aspect theoretical analysis of the phenomenon of medical blogging as a key element in the transformation of the healthcare system under conditions of global digitalization. The study substantiates the transition from the traditional paternalistic model of “doctor–patient” interaction to a modern participatory paradigm, in which the medical blog acts as the main mediator.

The author examines in detail the educational function of medical blogging aimed at increasing public health literacy and effectively counteracting the “infodemic” — the uncontrolled spread of unreliable medical information. The paper analyzes psychological mechanisms of forming compliance (adherence to treatment) through digital trust, as well as deontological risks and ethical boundaries of a physician’s presence in the media space.

Special attention is paid to the role of medical blogs in pediatric practice as a tool for reducing parental anxiety. The article emphasizes the necessity of integrating professional digital communication skills into the system of continuing medical education.
DOI: 10.5281/zenodo.18534104
title: THE SIGNIFICANCE OF MEDICAL BLOGS IN THE MODERN HEALTHCARE SYSTEM: COMMUNICATIVE, EDUCATIONAL, AND REPUTATIONAL ASPECTS

description: This article presents a multi-aspect theoretical analysis of the phenomenon of medical blogging as a key element in the transformation of the healthcare system under conditions of global digitalization. The study substantiates the transition from the traditional paternalistic model of “doctor–patient” interaction to a modern participatory paradigm, in which the medical blog acts as the main mediator.

The author examines in detail the educational function of medical blogging aimed at increasing public health literacy and effectively counteracting the “infodemic” — the uncontrolled spread of unreliable medical information. The paper analyzes psychological mechanisms of forming compliance (adherence to treatment) through digital trust, as well as deontological risks and ethical boundaries of a physician’s presence in the media space.

Special attention is paid to the role of medical blogs in pediatric practice as a tool for reducing parental anxiety. The article emphasizes the necessity of integrating professional digital communication skills into the system of continuing medical education.
DOI: 10.15468/dl.7nmrz7
title: Occurrence Download

description: A dataset containing 2259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gavia immer"
 ]
}

 The dataset includes 2259 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002081-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.71853/7c42-jg77
title: PDB structures of the molecules for publication "Heparin Inclusion in Cyclodextrins: A Combined MD and ITC Study"

description: <p>PDB structures of hexameric heparin, alpha-, beta- and gamma-cyclodextrins for MD simulations used in the publication https://doi.org/10.34808/tq2024/28.3/a</p>