cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9948737
title: Supplementary Material for: Waist Circumference and Risk of Liver Cancer: A Systematic Review and Meta-Analysis of over 2 Million Cohort Study Participants

description: <b><i>Purpose:</i></b> Liver cancer is the sixth most common type of cancer worldwide, and waist circumference (WC) is associated with its risk beyond body mass index (BMI). This dose-response meta-analysis was performed to investigate the association between WC and the risk of incident liver cancer using prospective cohort studies. <b><i>Methods:</i></b> A comprehensive systematic search was conducted in MEDLINE/PubMed, Web of Science databases, Scopus, and Coch­rane from inception to May 2019. Studies with retrospective or prospective cohort design that reported hazard ratio (HR), risk ratio, or odds ratio, and the corresponding 95% confidence intervals (CI) for liver cancer based on WC categories were included in this meta-analysis. Combined HRs with 95% CIs was estimated by DerSimonian and Laird random-effects models. <b><i>Results:</i></b> Associations between WC and liver cancer were reported in 5 articles with 2,547,188 participants. All studies were published between 2013 and 2019. Pooled results showed a strong significant association with minimum heterogeneity between WC and risk of liver cancer (HR 1.59, 95% CI 1.38–1.83, <i>p</i><sub>heterogeneity</sub> = 0.42: <i>I</i><sup>2</sup> = 0%). Moreover, a dose-response model indicated a significant positive association between WC and risk of liver cancer (exp(b) = 1.018, <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> This systematic review and dose-response meta-analysis highlights WC as a significant risk factor related to the incidence of liver cancer.
DOI: 10.6084/m9.figshare.9948737.v1
title: Supplementary Material for: Waist Circumference and Risk of Liver Cancer: A Systematic Review and Meta-Analysis of over 2 Million Cohort Study Participants

description: <b><i>Purpose:</i></b> Liver cancer is the sixth most common type of cancer worldwide, and waist circumference (WC) is associated with its risk beyond body mass index (BMI). This dose-response meta-analysis was performed to investigate the association between WC and the risk of incident liver cancer using prospective cohort studies. <b><i>Methods:</i></b> A comprehensive systematic search was conducted in MEDLINE/PubMed, Web of Science databases, Scopus, and Coch­rane from inception to May 2019. Studies with retrospective or prospective cohort design that reported hazard ratio (HR), risk ratio, or odds ratio, and the corresponding 95% confidence intervals (CI) for liver cancer based on WC categories were included in this meta-analysis. Combined HRs with 95% CIs was estimated by DerSimonian and Laird random-effects models. <b><i>Results:</i></b> Associations between WC and liver cancer were reported in 5 articles with 2,547,188 participants. All studies were published between 2013 and 2019. Pooled results showed a strong significant association with minimum heterogeneity between WC and risk of liver cancer (HR 1.59, 95% CI 1.38–1.83, <i>p</i><sub>heterogeneity</sub> = 0.42: <i>I</i><sup>2</sup> = 0%). Moreover, a dose-response model indicated a significant positive association between WC and risk of liver cancer (exp(b) = 1.018, <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> This systematic review and dose-response meta-analysis highlights WC as a significant risk factor related to the incidence of liver cancer.
DOI: 10.6084/m9.figshare.9948611
title: Data of manuscript (NC).xlsx

description: The name of the sheet is the same as the manuscript. For details, please see the manuscript.
DOI: 10.6084/m9.figshare.9948611.v1
title: Data of manuscript (NC).xlsx

description: See the manuscript
DOI: 10.6084/m9.figshare.9948611.v3
title: Data of manuscript (NC).xlsx

description: The name of the sheet is the same as the manuscript. For details, please see the manuscript.
DOI: 10.6084/m9.figshare.9948611.v2
title: Data of manuscript (NC).xlsx

description: The name of the sheet is the same as the manuscript. For details, please see the manuscript.
DOI: 10.6084/m9.figshare.9948467
title: Results from "Heat tolerance and acclimation capacity in subterranean arthropods living under common and stable thermal conditions"

description: Results (survival time) from basal heat tolerance and acclimation capacity experiments
DOI: 10.6084/m9.figshare.9948470
title: Two new species of fossil Paratydeidae (Acari: Trombidiformes) from the late Eocene amber highlight ultraslow morphological evolution in a soil-inhabiting arthropod lineage

description: We describe two species of soil mite of the family Paratydeidae from the late Eocene Rovno amber: <i>Scolotydaeus vlaskini</i> sp. nov. and <i>Tanytydeus pogrebnyaki</i> sp. nov. This is the first formal description of fossils from the family Paratydeidae. These exceptionally well-preserved fossils have very similar morphologies compared to extant species, suggesting that Paratydeidae is a lineage that has experienced extremely slow rates of phenotypic evolution. To infer rates of morphological evolution in this group, we used a combination of tip dating (from the fossils) and internal node dating (based on molecular outgroup time-calibrated analysis) in a Bayesian phylogenetic framework. This analysis inferred Paratydeidae as an ancient lineage, originating 242 Ma (stem group) and diversifying 150 Ma (crown group), having ultraslow average rates of morphological evolution, i.e. 4.53e-04 changes per site per million years, which is equivalent to one change in any of the characters per 46.0 million years, per each branch of the tree. Based on our divergence time estimates, we suggest that the present global distribution of the group could be explained by their early evolution on the Pangaean supercontinent. Analysis of character state distributions in the fossil specimens suggests later extinction of ancestral taxa in the Palaearctic. http://zoobank.org/urn:lsid:zoobank.org:pub:265A36D2-B6AE-4150-B5B6-59054D33CEA0
DOI: 10.6084/m9.figshare.9948470.v1
title: Two new species of fossil Paratydeidae (Acari: Trombidiformes) from the late Eocene amber highlight ultraslow morphological evolution in a soil-inhabiting arthropod lineage

description: We describe two species of soil mite of the family Paratydeidae from the late Eocene Rovno amber: <i>Scolotydaeus vlaskini</i> sp. nov. and <i>Tanytydeus pogrebnyaki</i> sp. nov. This is the first formal description of fossils from the family Paratydeidae. These exceptionally well-preserved fossils have very similar morphologies compared to extant species, suggesting that Paratydeidae is a lineage that has experienced extremely slow rates of phenotypic evolution. To infer rates of morphological evolution in this group, we used a combination of tip dating (from the fossils) and internal node dating (based on molecular outgroup time-calibrated analysis) in a Bayesian phylogenetic framework. This analysis inferred Paratydeidae as an ancient lineage, originating 242 Ma (stem group) and diversifying 150 Ma (crown group), having ultraslow average rates of morphological evolution, i.e. 4.53e-04 changes per site per million years, which is equivalent to one change in any of the characters per 46.0 million years, per each branch of the tree. Based on our divergence time estimates, we suggest that the present global distribution of the group could be explained by their early evolution on the Pangaean supercontinent. Analysis of character state distributions in the fossil specimens suggests later extinction of ancestral taxa in the Palaearctic. http://zoobank.org/urn:lsid:zoobank.org:pub:265A36D2-B6AE-4150-B5B6-59054D33CEA0
DOI: 10.6084/m9.figshare.9948467.v1
title: Results from "Heat tolerance and acclimation capacity in subterranean arthropods living under common and stable thermal conditions"

description: Results (survival time) from basal heat tolerance and acclimation capacity experiments
DOI: 10.6084/m9.figshare.9948455
title: Table S1 from Accurate wisdom of the crowd from unsupervised dimension reduction

description: The AUROC and AUPR of the best individual, the DNN, and different crowd wisdom methods for real-world datasets. Numbers in method names represent the number of nearest neighbors.
DOI: 10.6084/m9.figshare.9948455.v1
title: Table S1 from Accurate wisdom of the crowd from unsupervised dimension reduction

description: The AUROC and AUPR of the best individual, the DNN, and different crowd wisdom methods for real-world datasets. Numbers in method names represent the number of nearest neighbors.
DOI: 10.6084/m9.figshare.9948440
title: Table S2 from Accurate wisdom of the crowd from unsupervised dimension reduction

description: Simulation parameters
DOI: 10.6084/m9.figshare.9948440.v1
title: Table S2 from Accurate wisdom of the crowd from unsupervised dimension reduction

description: Simulation parameters
DOI: 10.6084/m9.figshare.9948422
title: Integrative approach untangles the misconceptions about the range and identity of two stingless bees from the Brazilian semiarid region

description: Several species and morphotypes of <i>Melipona</i> are popularly known as “mandaçaia”, even though they show distinctive patterns of tergal stripes among other peculiar features. In particular, <i>Melipona mandacaia</i> is often referred to as isolated populations of <i>Melipona quadrifasciata</i> with continuous tergal stripes from Northeastern Brazil, thus leading to biased estimates of their natural range and improper management of both species in meliponiculture. In order to put an end to this debate, we analyzed the genetic and ecological divergence among populations of these stingless bees in Brazilian semiarid region, sampled over six Brazilian states. Both approaches were congruent since they revealed a clear differentiation between <i>M. quadrifasciata</i> with continuous stripes and <i>M. mandacaia</i>, recovering each one as unique evolutionary units (highly-supported reciprocal monophyletic clades separated by 11 mutations and 1.8% of genetic divergence) without niche overlapping. These data highlight the importance of independent management for each group, particularly because <i>M. mandacaia</i> is one of the most commercially exploited bee species in traditional agriculture along northeastern Brazil. Moreover, the latter should be monitored in relation to their population viability since natural areas in Brazilian semiarid region have been increasingly deforested over the last decades.
DOI: 10.6084/m9.figshare.9948422.v1
title: Integrative approach untangles the misconceptions about the range and identity of two stingless bees from the Brazilian semiarid region

description: Several species and morphotypes of <i>Melipona</i> are popularly known as “mandaçaia”, even though they show distinctive patterns of tergal stripes among other peculiar features. In particular, <i>Melipona mandacaia</i> is often referred to as isolated populations of <i>Melipona quadrifasciata</i> with continuous tergal stripes from Northeastern Brazil, thus leading to biased estimates of their natural range and improper management of both species in meliponiculture. In order to put an end to this debate, we analyzed the genetic and ecological divergence among populations of these stingless bees in Brazilian semiarid region, sampled over six Brazilian states. Both approaches were congruent since they revealed a clear differentiation between <i>M. quadrifasciata</i> with continuous stripes and <i>M. mandacaia</i>, recovering each one as unique evolutionary units (highly-supported reciprocal monophyletic clades separated by 11 mutations and 1.8% of genetic divergence) without niche overlapping. These data highlight the importance of independent management for each group, particularly because <i>M. mandacaia</i> is one of the most commercially exploited bee species in traditional agriculture along northeastern Brazil. Moreover, the latter should be monitored in relation to their population viability since natural areas in Brazilian semiarid region have been increasingly deforested over the last decades.
DOI: 10.6084/m9.figshare.9948371
title: grid.1003.2

description: What does Australasian Research Look Like Data for institution
DOI: 10.6084/m9.figshare.9948296
title: Data Records

description: <b>Reference </b><b>v</b><b>alues for resting and post exerc</b><b>ise hemodynamic parameters in a 6</b><b>-</b><b>18 </b><b>year</b><b> </b><b>old population</b><b></b><b>Data Records.zip</b><br>
DOI: 10.6084/m9.figshare.9948308
title: Long-term changes in fluxes of total alkalinity, freshwater, and dissolved silicate, and the concentration of dissolved silicate in the Lower Changjiang (Yangtze River) from the 1960s to 2017

description: Synthesizing literature data from Liu et al. (2002), Li and Zhang (2003), Zhai et al. (2007), Dai et al. (2011), Zhang (2011), Huang (2012), Müller et al. (2012), Zhao et al. (2015) and Ran et al. (2016).<br><b>Reference</b><br>Liu, X.-C., Shen, H.-T., & Huang, Q.-H. (2002). Concentration variation and flux estimation of dissolved inorganic nutrient from the Changjiang River into its estuary (in Chinese). Oceanologia et Limnologia Sinica, 33(5), 332–340. <br><br>Li, J.-Y., & Zhang, J. (2003). Variations of solid content and water chemistry at Nantong station and weathering processes of the Changjiang watershed (in Chinese). Resources and Environment in the Yangtze Basin, 12(4), 363–369. <br>Zhai, W.-D., Dai, M.-H., & Guo, X.-H. (2007). Carbonate system and CO<sub>2</sub> degassing fluxes in the inner estuary of Changjiang (Yangtze) River, China. Marine Chemistry, 107, 342–356. https://doi.org/10.1016/j.marchem.2007.02.011 <br>Dai, Z.-J., Du, J.-Z., Zhang, X.-L., Su, N., & Li, J.-F. (2011). Variation of riverine material loads and environmental consequences on the Changjiang (Yangtze) Estuary in recent decades (1955–2008). Environmental Science & Technology, 45, 223–227. https://doi.org/10.1021/es103026a <br>Zhang, J. (2011). On the critical issues of land-ocean interactions in coastal zones (in Chinese). Chinese Science Bulletin, 56, 1956–1966. https://doi.org/10.1360/972011-465 <br>Huang, X. (2012). The nutrients dynamics and fluxes in the Changjiang Estuary: comparison between the South and North Branches (in Chinese). Master thesis, Xiameng University. <br>Müller. B., Berg, M., Pernet-Coudrier, B., Qi, W.-X., & Liu, H.-J. (2012). The geochemistry of the Yangtze River: Seasonality of concentrations and temporal trends of chemical loads. Global Biogeochemical Cycles, 26, GB2028. https://doi.org/10.1029/2011GB004273 <br>Zhao, Y.-F., Zou, X.-Q., Gao, J.-H., Xu, X., Wang, C.-L., Tang, D.-H., Wang, T., & Wu, X.-W. (2015). Quantifying the anthropogenic and climatic contributions to changes in water discharge and sediment load into the sea: A case study of the Yangtze River, China. Science of The Total Environment, 536, 803–812. https://doi.org/10.1016/j.scitotenv.2015.07.119 <br>Ran, X.-B., Liu, S., Liu, J., Zang, J.-Y., Che, H., Ma, Y.-X., & Wang, Y.-B. (2016). Composition and variability in the export of biogenic silica in the Changjiang River and the effect of Three Gorges Reservoir. Science of the Total Environment, 571, 1191–1199. https://doi.org/10.1016/j.scitotenv.2016.07.125<br> <br>
DOI: 10.6084/m9.figshare.9948272
title: figure 5-d(wet spraying sample).xlsx

description: <b>Resistance variations of SWCNT-based strain sensor (after wet spraying)</b>
DOI: 10.6084/m9.figshare.9948296.v1
title: Data Records

description: <b>Reference </b><b>v</b><b>alues for resting and post exerc</b><b>ise hemodynamic parameters in a 6</b><b>-</b><b>18 </b><b>year</b><b> </b><b>old population</b><b></b><b>Data Records.zip</b><br>
DOI: 10.6084/m9.figshare.9948272.v1
title: figure 5-d(wet spraying sample).xlsx

description: <b>Resistance variations of SWCNT-based strain sensor (after wet spraying)</b>
DOI: 10.6084/m9.figshare.9948233
title: Mouse list of counts after hypoxic stress by RNA-seq (up/down/unchanged)

description: The number of experiments in which gene was up/down regulated was counted for all genes in mouse utilizing RNA-seq data collected. For up/down regulated gene selection, over 2 fold threshold was adopted.
DOI: 10.6084/m9.figshare.9948254
title: JGR Solid Earth - Dielectric polarisation studies in partially saturated shale cores

description: Data pertaining to paper published in Journal of geophysical research: solid earth - "Dielectric Polarisation Studies in Partially Saturated Shale Cores"
DOI: 10.6084/m9.figshare.9948269
title: figure 3-c(normalized resistance).xlsx

description: <b>Relationship between resistance change and time for sensor under 80% strain (normalized resistance values)</b>
DOI: 10.6084/m9.figshare.9948254.v1
title: JGR Solid Earth - Dielectric polarisation studies in partially saturated shale cores

description: Data pertaining to paper published in Journal of geophysical research: solid earth - "Dielectric Polarisation Studies in Partially Saturated Shale Cores"
DOI: 10.6084/m9.figshare.9948269.v1
title: figure 3-c(normalized resistance).xlsx

description: <b>Relationship between resistance change and time for sensor under 80% strain (normalized resistance values)</b>
DOI: 10.6084/m9.figshare.9948200
title: Mouse RNA-seq processed dataset for hypoxic transcriptomes

description: RNA-seq reads for hypoxic transcriptomes were processed using salmon after the trimming by Trim Galore (version 0.4.1) with Cutadapt (version 1.9.1). The transcript quantification was done by salmon version 0.14.0 with reference transcript sets in GENCODE release M21.<br>
DOI: 10.6084/m9.figshare.9948233.v1
title: Mouse list of counts after hypoxic stress by RNA-seq (up/down/unchanged)

description: The number of experiments in which gene was up/down regulated was counted for all genes in mouse utilizing RNA-seq data collected. For up/down regulated gene selection, over 2 fold threshold was adopted.
DOI: 10.6084/m9.figshare.9948197
title: Supplementary Material for: Lipocalin-1 Expression as a Prognosticator Marker of Survival in Breast Cancer Patients

description: <b><i>Purpose:</i></b> LCN1 (lipocalin-1), a gene that encodes tear lipocalin (or von Ebner’s gland protein), is mainly expressed in secretory glands and tissues, such as the lachrymal and lingual gland, and nasal, mammary, and tracheobronchial mucosae. Analysis of the Cancer Genome Atlas (TCGA) Breast Carcinoma (BRCA) level 3 data revealed a relationship between LCN1 expression and survival in breast cancer patients. <b><i>Methods:</i></b> The χ<sup>2</sup> test and Fisher exact test were applied to analyze the clinical data and RNA sequencing expression data, and the association between LCN1 expression and clinicopathologic features was determined. The receiver-operating characteristic (ROC) curve of LCN1 was drawn to assess its ability as a diagnostic marker, and the optimal cutoff value was obtained from the ROC curve to distinguish groups with high and low LCN1 expression. Cox regression was used to compare both groups, and a log-rank test was applied to calculate <i>p</i> values and compare the ­Kaplan-Meier curves. Furthermore, GEO datasets were employed for external data validation. <b><i>Results:</i></b> Analysis of 1,104 breast cancer patients with a primary tumor revealed that LCN1 was overexpressed in breast cancer. High LCN1 expression was associated with clinicopathologic features and poor survival. Analyzing the area under the ROC curve (AUC) of LCN1, it was found that its diagnostic ability was limited. Multivariate analysis indicated that LCN1 expression is an independent predictor of survival in breast cancer patients. Through validation in GEO datasets, LCN1 expression was higher in tumor than normal tissue of the breast. High LCN1 expression was associated with poor survival in breast cancer patients. <b><i>Conclusions:</i></b> High LCN1 expression is an independent prognosticator of a poor prognosis in breast cancer.
DOI: 10.6084/m9.figshare.9948200.v1
title: Mouse RNA-seq processed dataset for hypoxic transcriptomes

description: RNA-seq reads for hypoxic transcriptomes were processed using salmon after the trimming by Trim Galore (version 0.4.1) with Cutadapt (version 1.9.1). The transcript quantification was done by salmon version 0.14.0 with reference transcript sets in GENCODE release M21.<br>
DOI: 10.6084/m9.figshare.9948194
title: The effect of heavy metal contamination on human and animal health in the vicinity of a zinc smelter

description: A diagnosis of heavy metal poisoning in sheep living on pastures in the vicinity of a smelting facility in the Wumeng mountain area of China was based on laboratory tests and clinical symptoms. Furthermore, heavy metal contamination in the food chain was found to have a deleterious effect on the health of local residents. The levels of copper(Cu), zinc(Zn), cadmium (Cd), and lead (Pb) in irrigation water, soil, forages, and animal tissues were measured in samples taken from the vicinity of a smelting facility and control samples. Heavy metal contents in food (corn, rice, and wheat), as well as in human tissues (blood and hair) obtained from local residents were also determined. Hematological values were also determined in human and animal samples. The content of Cu, Zn, Cd, and Pb in irrigation water, soils, and forages were markedly higher in affected areas than in samples from healthy pastures. Concentrations of Cd and Pb were 177.82 and 16.61 times greater in forages than controls, respectively, and 68.71 and 15.66 times greater in soils than controls, respectively. The heavy metal content in food (corn, rice, and wheat) from affected areas was markedly higher than in the control samples. Cd and Pb content in the tissues of affected sheep were markedly higher than in control animals (<i>P &lt; 0.01</i>), while concentrations of Cd and Pb in blood and hair samples from local residents were markedly higher than in control samples (<i>P &lt; 0.01</i>). The occurrence of anemia in affected humans and animals followed a hypochromic and microcytic pattern. The intake of Cd and Pb was estimated according to herbage ingestion rates. It was found that the levels of Cd and Pb which accumulated in sheep through the ingestion of vegetation growing in the sites closest to the smelter were approximately 3.36 and 38.47 mg/kg body wt./day, respectively. Such levels surpassed the fatal dosages for sheep of 1.13 mg Cd/kg body wt/day and 4.42 mg Pb/kg body wt./day. The serum total antioxidant capacity in affected humans and animals was significantly lower than in the controls (<i>P &lt; 0.01</i>). Serum protein parameters in affected humans and animals were significantly reduced (<i>P </i>&lt; 0.01); therefore, it was concluded that heavy metal contamination caused harm to sheep, and also posed a significant risk to humans living in the vicinity of the zinc smelting facility.
DOI: 10.6084/m9.figshare.9948170
title: Human RNA-seq processed dataset for hypoxic transcriptomes

description: RNA-seq reads for hypoxic transcriptomes were processed using salmon after the trimming by Trim Galore (version 0.4.1) with Cutadapt (version 1.9.1). The transcript quantification was done by salmon version 0.14.0 with reference transcript sets in GENCODE release 30.<br><br>