cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11710227
title: CW.vaginal.seq

description: The sequence file contains MiSeq 16S rRNA gene sequences from vaginal secretions collected from cis gender women. Metadata file includes which samples and their identifiers that were used in Birse et al. <br><br>All statistical analysis R code is available on GitHub: <br><br>https://github.com/kmbirse/Birse_etal_Neovaginal-Microbiome
DOI: 10.6084/m9.figshare.11710227.v2
title: CW.vaginal.seq

description: The sequence file contains MiSeq 16S rRNA gene sequences from vaginal secretions collected from cis gender women. Metadata file includes which samples and their identifiers that were used in Birse et al. <br><br>All statistical analysis R code is available on GitHub: <br><br>https://github.com/kmbirse/Birse_etal_Neovaginal-Microbiome
DOI: 10.6084/m9.figshare.11710227.v1
title: CW 16S

description: Birse et al.
DOI: 10.6084/m9.figshare.11710155
title: Reclassification of ESA land cover

description: Reclass files to account for the role of nitrogen fertilization, disturbance and ecosystem types based on the ESA land over CCI map in 2012: http://maps.elie.ucl.ac.be/CCI/viewer/download.php<br>
DOI: 10.6084/m9.figshare.11709984
title: Maternal Endothelial Function, Circulating Endothelial Cells and Endothelial Progenitor Cells in Pregnancies Conceived With or Without In Vitro Fertilization

description: Supplemental Data
DOI: 10.6084/m9.figshare.11709984.v1
title: Maternal Endothelial Function, Circulating Endothelial Cells and Endothelial Progenitor Cells in Pregnancies Conceived With or Without In Vitro Fertilization

description: Supplemental Data
DOI: 10.6084/m9.figshare.11709963
title: 26-F1941AI2147AF2157V-tetraketide-11p

description: Tetraketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709963.v1
title: 26-F1941AI2147AF2157V-tetraketide-11p

description: Tetraketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709966
title: 1-WT

description: WT holo-ER model
DOI: 10.6084/m9.figshare.11709966.v1
title: 1-WT

description: WT holo-ER model
DOI: 10.6084/m9.figshare.11709903
title: 25-F1941AI2147AF2157V-Pentaketide-24p

description: pentaketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709903.v1
title: 25-F1941AI2147AF2157V-Pentaketide-24p

description: pentaketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709897
title: 24-F1941AI2147AF2157V-Triketide-18p

description: triketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709897.v1
title: 24-F1941AI2147AF2157V-Triketide-18p

description: triketide docked in triple mutant ER model
DOI: 10.6084/m9.figshare.11709882
title: 23-F1941AF2157V-Pentaketide-24p

description: pentaketide docked in F1941A F2157V mutrant ER model
DOI: 10.6084/m9.figshare.11709885
title: R scripts and knitted markdown files for analysis of ReFUS C3 genomic data, trait data, and genomic predictions

description: R markdown files for analysis of trait and SNP data of ReFUS C3 data. Order of analysis is:ReFUS C3 Final SNP QC and relationship matrix.RmdReFUS C3 Final SNP QC and relationship matrix.RmdBayesian and XGBoost genomic prediction ReFUS C3.RmdReFUS-C3-GWAS.RmdFigure4_Prediction_Results_Bar_Graph.Rmd<br>
DOI: 10.6084/m9.figshare.11709882.v1
title: 23-F1941AF2157V-Pentaketide-24p

description: pentaketide docked in F1941A F2157V mutrant ER model
DOI: 10.6084/m9.figshare.11709768
title: 22-F1941AF2157V-Triketide-18p

description: triketide docked in F1941A F2157V mutant ER model
DOI: 10.6084/m9.figshare.11709768.v1
title: 22-F1941AF2157V-Triketide-18p

description: triketide docked in F1941A F2157V mutant ER model
DOI: 10.6084/m9.figshare.11709756
title: 21-I2147AF2157V-Pentaketide-24p

description: pentaketide docked in I2147A F2157V mutant ER Model
DOI: 10.6084/m9.figshare.11709759
title: Post-Filtered SNP data on ReFUS S0:1 lines

description: Numericalized SNP calls (0 = homozygous for major allele, 1 = heterozygous, 2 = homozygous for minor allele) after filtering. Data remained on 5049 SNPs called on 451 lines.<br>
DOI: 10.6084/m9.figshare.11709756.v1
title: 21-I2147AF2157V-Pentaketide-24p

description: pentaketide docked in I2147A F2157V mutant ER Model
DOI: 10.6084/m9.figshare.11709759.v1
title: Post-Filtered SNP data on ReFUS S0:1 lines

description: Numericalized SNP calls (0 = homozygous for major allele, 1 = heterozygous, 2 = homozygous for minor allele) after filtering. Data remained on 5049 SNPs called on 451 lines.<br>
DOI: 10.6084/m9.figshare.11709744
title: 19-L2146I2147A-Pentaketide-24p

description: pentaketide docked in L2146A I2147A mutant ER Model
DOI: 10.6084/m9.figshare.11709747
title: 20-I2147AF2157V-Triketide18p

description: triketide docked in I2147A F2157V mutant ER model
DOI: 10.6084/m9.figshare.11709744.v1
title: 19-L2146I2147A-Pentaketide-24p

description: pentaketide docked in L2146A I2147A mutant ER Model
DOI: 10.6084/m9.figshare.11709747.v1
title: 20-I2147AF2157V-Triketide18p

description: triketide docked in I2147A F2157V mutant ER model
DOI: 10.6084/m9.figshare.11709729
title: 18-L2146I2147A-Triketide-18p

description: triketide docked in L2146A I2147A mutant ER model
DOI: 10.6084/m9.figshare.11709735
title: Pre-Filtered SNP data for ReFUS C3 S0:1 lines

description: SNP calls based on sequencing 489 maize lines, alignment to B73 reference AGP_V2, 7243 SNPs called. File is in hapmap format. <br>
DOI: 10.6084/m9.figshare.11709729.v1
title: 18-L2146I2147A-Triketide-18p

description: triketide docked in L2146A I2147A mutant ER model
DOI: 10.6084/m9.figshare.11709735.v1
title: Pre-Filtered SNP data for ReFUS C3 S0:1 lines

description: SNP calls based on sequencing 489 maize lines, alignment to B73 reference AGP_V2, 7243 SNPs called. File is in hapmap format. <br>
DOI: 10.6084/m9.figshare.11709711
title: 17-F2157A-Pentaketide-24p

description: pentaketide docked in F2157A mutant ER model
DOI: 10.6084/m9.figshare.11709720
title: Two-dimensional force-distance AFM map of a live zebrafish spinal cord microtome section

description: This dataset was used in [1] fig. 1e and [2] fig. 3a,d,g for visualization of the mechanical properties of the zebrafish spinal cord.<br><br>The AFM probe consisted of a polystyrene bead with a diameter of d = 37.28 ± 0.34 μm. For more information on sample preparation and measurement, please refer to [1] and [2].<br><br><br><b>References</b><br>[1] Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, and Jochen Guck. Zebrafish spinal cord repair is accompanied by transient tissue stiffening. Biophysical Journal, 118(2):448–463, jan 2020. doi:10.1016/j.bpj.2019.10.044.<br><br>[2] Paul Müller, Shada Abuhattum, Stephanie Möllmert, Elke Ulbricht, Anna V. Taubenberger, and Jochen Guck. Nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data. BMC Bioinformatics, 20(1):1–9, sep 2019. doi:10.1186/s12859-019-3010-3.<br><br>
DOI: 10.6084/m9.figshare.11709720.v1
title: Two-dimensional force-distance AFM map of a live zebrafish spinal cord microtome section

description: This dataset was used in [1] fig. 1e and [2] fig. 3a,d,g for visualization of the mechanical properties of the zebrafish spinal cord.<br><br>The AFM probe consisted of a polystyrene bead with a diameter of d = 37.28 ± 0.34 μm. For more information on sample preparation and measurement, please refer to [1] and [2].<br><br><br><b>References</b><br>[1] Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, and Jochen Guck. Zebrafish spinal cord repair is accompanied by transient tissue stiffening. Biophysical Journal, 118(2):448–463, jan 2020. doi:10.1016/j.bpj.2019.10.044.<br><br>[2] Paul Müller, Shada Abuhattum, Stephanie Möllmert, Elke Ulbricht, Anna V. Taubenberger, and Jochen Guck. Nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data. BMC Bioinformatics, 20(1):1–9, sep 2019. doi:10.1186/s12859-019-3010-3.<br><br>
DOI: 10.6084/m9.figshare.11709711.v1
title: 17-F2157A-Pentaketide-24p

description: pentaketide docked in F2157A mutant ER model
DOI: 10.6084/m9.figshare.11709690
title: 15-I2147-Pentaketide-24p

description: pentaketide docked in I2147A mutant ER model
DOI: 10.6084/m9.figshare.11709702
title: 16-F2157A-Triketide-24p

description: triketide docked in F2157A mutant ER model
DOI: 10.6084/m9.figshare.11709702.v1
title: 16-F2157A-Triketide-24p

description: triketide docked in F2157A mutant ER model
DOI: 10.6084/m9.figshare.11709681
title: 13-L2146V-Pentaketide-24p

description: pentaketide docked in L2146V mutant E$R model
DOI: 10.6084/m9.figshare.11709684
title: 14-I2147A-Triketide-18p

description: triketide docked in I2147A mutant ER model
DOI: 10.6084/m9.figshare.11709681.v1
title: 13-L2146V-Pentaketide-24p

description: pentaketide docked in L2146V mutant E$R model
DOI: 10.6084/m9.figshare.11709684.v1
title: 14-I2147A-Triketide-18p

description: triketide docked in I2147A mutant ER model
DOI: 10.6084/m9.figshare.11709675
title: Gamma-ray observations of low-luminosity active galactic nuclei

description: Data generated from the paper De Menezes et al. 2020, "Gamma-ray observations of low-luminosity active galactic nuclei" published in MNRAS (DOI:10.1093/mnras/staa083). This dataset includes the following files:<br>1. all figures from the paper 2. results of spectral fits to the Fermi LAT emission from low-luminosity AGNs (LLAGNs) in the Palomar sample (`spectral-fits.zip`)3. TS maps: FITS files with all TS maps (`ts-maps.zip`) and image combining all TS maps (`all-ts-maps.png`)4. ASCII file with the luminosities in radio, gamma-rays and X-rays (`data_Gamma-Radio-X.dat`)5. full spectral energy distribution (SEDs) for NGC 315 and NGC 4261, including RIAF and SSC model data <br>More information about each of the data products above are included below. This text is also included in the file `README.md` included.<br># 1. Figures from paper<br>All the plots included in the latest version of the paper are included in the repository in the PNG format. Some of the figures are in the zip files.<br># 2. Spectral fits to the globular clusters *Fermi* LAT emission<br>The file `spectral-fits.zip` includes ASCII files with the output from the spectral fits performed to each of the 197 LLAGNs analysed, such as<br>- flux- spectrum type- prefactor- index<br>The modelling was carried out with ScienceTools v1.0.0 and fermipy v0.17.4.<br># 3. FITS files with the TS maps for all sources<br>The file `ts-maps.zip` includes FITS files with the images for the TS maps generated for the field of each LLAGN.<br>The value of TS corresponds roughly to the square of the statistical significance of the presence of a point source above background, in standard deviations. As such, a value of TS=25 would correspond to a source detected at ~5sigma.
DOI: 10.6084/m9.figshare.11709672
title: 12-L2146V-Triketide-18p

description: triketide docked in L2146V mutant ER model
DOI: 10.6084/m9.figshare.11709672.v1
title: 12-L2146V-Triketide-18p

description: triketide docked in L2146V mutant ER model
DOI: 10.6084/m9.figshare.11709675.v1
title: Gamma-ray observations of low-luminosity active galactic nuclei

description: Data generated from the paper De Menezes et al. 2020, "Gamma-ray observations of low-luminosity active galactic nuclei" published in MNRAS (DOI:10.1093/mnras/staa083). This dataset includes the following files:<br>1. all figures from the paper 2. results of spectral fits to the Fermi LAT emission from low-luminosity AGNs (LLAGNs) in the Palomar sample (`spectral-fits.zip`)3. TS maps: FITS files with all TS maps (`ts-maps.zip`) and image combining all TS maps (`all-ts-maps.png`)4. ASCII file with the luminosities in radio, gamma-rays and X-rays (`data_Gamma-Radio-X.dat`)5. full spectral energy distribution (SEDs) for NGC 315 and NGC 4261, including RIAF and SSC model data <br>More information about each of the data products above are included below. This text is also included in the file `README.md` included.<br># 1. Figures from paper<br>All the plots included in the latest version of the paper are included in the repository in the PNG format. Some of the figures are in the zip files.<br># 2. Spectral fits to the globular clusters *Fermi* LAT emission<br>The file `spectral-fits.zip` includes ASCII files with the output from the spectral fits performed to each of the 197 LLAGNs analysed, such as<br>- flux- spectrum type- prefactor- index<br>The modelling was carried out with ScienceTools v1.0.0 and fermipy v0.17.4.<br># 3. FITS files with the TS maps for all sources<br>The file `ts-maps.zip` includes FITS files with the images for the TS maps generated for the field of each LLAGN.<br>The value of TS corresponds roughly to the square of the statistical significance of the presence of a point source above background, in standard deviations. As such, a value of TS=25 would correspond to a source detected at ~5sigma.
DOI: 10.6084/m9.figshare.11709669
title: 11-L2146A-Pentaketide-24p

description: pentaketide docked in L2146A mutant ER model
DOI: 10.6084/m9.figshare.11709657
title: 10-L2146-Triketide-18p

description: triketide docked in L2146A mutant ER model
DOI: 10.6084/m9.figshare.11709669.v1
title: 11-L2146A-Pentaketide-24p

description: pentaketide docked in L2146A mutant ER model
DOI: 10.6084/m9.figshare.11709651
title: 9-F1941A-4S,6S-Tetraketide-11p

description: tetraketide docked in F1941A mutant ER model
DOI: 10.6084/m9.figshare.11709651.v1
title: 9-F1941A-4S,6S-Tetraketide-11p

description: tetraketide docked in F1941A mutant ER model
DOI: 10.6084/m9.figshare.11709621
title: 7-WT-Pentaketide-24p

description: pentaketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709639
title: 8-I1938A-4S,6S-Tetraketide-11p

description: tetraketide docked in I1938A ER model
DOI: 10.6084/m9.figshare.11709621.v1
title: 7-WT-Pentaketide-24p

description: pentaketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709639.v1
title: 8-I1938A-4S,6S-Tetraketide-11p

description: tetraketide docked in I1938A ER model
DOI: 10.6084/m9.figshare.11709591
title: 5-WT-4R,6R-Tetraketide-13p

description: tetraketide docked in ER Model
DOI: 10.6084/m9.figshare.11709600
title: 6-WT-4S,6R-Tetraketide-14p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709585
title: 4-WT-4R,6S-tetraketide-12p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709591.v1
title: 5-WT-4R,6R-Tetraketide-13p

description: tetraketide docked in ER Model
DOI: 10.6084/m9.figshare.11709579
title: 3-WT-4S,6S-Tetraketide-11p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709579.v1
title: 3-WT-4S,6S-Tetraketide-11p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709585.v1
title: 4-WT-4R,6S-tetraketide-12p

description: Tetraketide docked in WT ER model
DOI: 10.6084/m9.figshare.11709567
title: 2-WT-Triketide-18p

description: Docked triketide substate in model of SQTKS ER domain
DOI: 10.6084/m9.figshare.11709570
title: Plot trait data for ReFUS C3 population evaluated in 2014-2016

description: see READ_ME.txt file for detailed description<br>
DOI: 10.6084/m9.figshare.11709567.v1
title: 2-WT-Triketide-18p

description: Docked triketide substate in model of SQTKS ER domain
DOI: 10.6084/m9.figshare.11709534
title: mokos_es_al_2020_phylogeny_tree.nwk

description: Phylogeny tree used in Mokos et al 2020.
DOI: 10.6084/m9.figshare.11709570.v1
title: Plot trait data for ReFUS C3 population evaluated in 2014-2016

description: see READ_ME.txt file for detailed description<br>
DOI: 10.6084/m9.figshare.11709531
title: mokos_et_al_2020__metadata.xlsx

description: Description of dataset.
DOI: 10.6084/m9.figshare.11709534.v1
title: mokos_es_al_2020_phylogeny_tree.nwk

description: Phylogeny tree used in Mokos et al 2020.
DOI: 10.6084/m9.figshare.11709528
title: mokos_et_al_2020_supplementary_data.xlsx

description: Raw dataset of Mokos et al 2020
DOI: 10.6084/m9.figshare.11709531.v1
title: mokos_et_al_2020__metadata.xlsx

description: Description of dataset.
DOI: 10.6084/m9.figshare.11709528.v1
title: mokos_et_al_2020_supplementary_data.xlsx

description: Raw dataset of Mokos et al 2020
DOI: 10.6084/m9.figshare.11709072
title: Prognostic score predicts overall survival following complete urinary tract extirpation

description: <b>Purpose:</b> To evaluate the oncological outcome and complications of patients treated with complete urinary tract extirpation (CUTE) in our department, and to identify prognostic factors for survival. <b>Methods:</b> Clinico-pathological data of patients treated with one-step or stepwise CUTE between 1999 and 2017 were collected retrospectively. Complications were classified according to the modified Clavien–Dindo classification (CDC) in the early (≤30 days) and late (&gt;30 days) follow-up. Log-rank test was used to assess independent predictors of overall survival (OS), cancer-specific survival (CSS) and recurrence-free survival (RFS). <b>Results:</b> Twenty-five patients (20 male) underwent CUTE (16 one-step) for BC + unilateral/bilateral UTUC. Minor (CDC 1-2) and major (CDC3-5) complications were observed in 72% and 40% of patients, respectively, in the early postoperative period (≤30 days). Five (20%) patients died in the perioperative period (CDC 5) with a median OS of 52 days (range: 25–77). Median time to last follow-up or death was 30 months (range: 0–161). Median OS was 50 months (95% Confidence Interval [CI]: 22–118 months), while median CCS and RFS were not reached. The 5-year OS, CSS and RFS were 42.7%, 69.6% and 66.7%, respectively. A score for determining which patients would benefit from CUTE was arbitrarily developed, and showed that the patients with a score of 0–2 points (good prognosis) had a better OS than the patients with a poor prognosis (3–4 points) in the log-rank test. <b>Conclusions:</b> Because of lower OS rates, patients with ESRD or with a CUTE score of 3–4 points are probably not ideal candidates for CUTE.
DOI: 10.6084/m9.figshare.11709072.v1
title: Prognostic score predicts overall survival following complete urinary tract extirpation

description: <b>Purpose:</b> To evaluate the oncological outcome and complications of patients treated with complete urinary tract extirpation (CUTE) in our department, and to identify prognostic factors for survival. <b>Methods:</b> Clinico-pathological data of patients treated with one-step or stepwise CUTE between 1999 and 2017 were collected retrospectively. Complications were classified according to the modified Clavien–Dindo classification (CDC) in the early (≤30 days) and late (&gt;30 days) follow-up. Log-rank test was used to assess independent predictors of overall survival (OS), cancer-specific survival (CSS) and recurrence-free survival (RFS). <b>Results:</b> Twenty-five patients (20 male) underwent CUTE (16 one-step) for BC + unilateral/bilateral UTUC. Minor (CDC 1-2) and major (CDC3-5) complications were observed in 72% and 40% of patients, respectively, in the early postoperative period (≤30 days). Five (20%) patients died in the perioperative period (CDC 5) with a median OS of 52 days (range: 25–77). Median time to last follow-up or death was 30 months (range: 0–161). Median OS was 50 months (95% Confidence Interval [CI]: 22–118 months), while median CCS and RFS were not reached. The 5-year OS, CSS and RFS were 42.7%, 69.6% and 66.7%, respectively. A score for determining which patients would benefit from CUTE was arbitrarily developed, and showed that the patients with a score of 0–2 points (good prognosis) had a better OS than the patients with a poor prognosis (3–4 points) in the log-rank test. <b>Conclusions:</b> Because of lower OS rates, patients with ESRD or with a CUTE score of 3–4 points are probably not ideal candidates for CUTE.
DOI: 10.6084/m9.figshare.11709054
title: Tibetan sheep and sheep Raw Data

description: This data set provides detail information about Neuroglobin expression in the retina of Tibetan sheep and sheep. <br>
DOI: 10.6084/m9.figshare.11709054.v1
title: tangyuting数据(Tibetan sheep and sheep）.xlsx

description: This data set provides detail information about Neuroglobin expression in the retina of Tibetan sheep and sheep. <br>
DOI: 10.6084/m9.figshare.11708994
title: Adaptive Simplification of GPS Trajectories with Geographic Context

description: OSM point features in Europe with tags categorized as POI in the Geofabrik taxonomy. Extracted from original OpenStreetMap database (osm.pbf) in 09.2019 (https://www.openstreetmap.org/#map=7/46.825/8.224)
DOI: 10.6084/m9.figshare.11708994.v1
title: Adaptive Simplification of GPS Trajectories with Geographic Context

description: OSM point features in Europe with tags categorized as POI in the Geofabrik taxonomy. Extracted from original OpenStreetMap database (osm.pbf) in 09.2019 (https://www.openstreetmap.org/#map=7/46.825/8.224)
DOI: 10.6084/m9.figshare.11708901
title: Electronic Supplementary Material from Molecular anatomy of the pre-primitive-streak chick embryo

description: Excel file with full RNAseq results for comparisons
DOI: 10.6084/m9.figshare.11708901.v1
title: Electronic Supplementary Material from Molecular anatomy of the pre-primitive-streak chick embryo

description: Excel file with full RNAseq results for comparisons
DOI: 10.6084/m9.figshare.11708889
title: Untitled Item

description: ----<br><br>ONE interface<br><br>The data is available via the ONE interface.<br><br>Installation instructions here.<br><br><br>To search and download this dataset:<br><br><br>from oneibl.onelight import ONE<br>one = ONE()<br>sessions = one.search(['trials']) # search for all sessions that have a `trials` object<br>session = sessions[0] # take the first session<br>trials = one.load_object(session, 'trials') # load the trials object<br>print(trials.intervals) # trials is a Bunch, values are NumPy arrays or pandas DataFrames<br>print(trials.goCue_times)<br><br><br>
DOI: 10.6084/m9.figshare.11708883
title: Data_PlosOneSubmission_Jan_2020.xlsx

description: Data set from "Anodal tDCS over the right parietal but not frontal cortex enhances the ability to overcome task set inhibition during task-switching" by Sdoia, S., Zivi, P., Ferlazzo, F.
DOI: 10.6084/m9.figshare.11708883.v1
title: Data_PlosOneSubmission_Jan_2020.xlsx

description: Data set from "Anodal tDCS over the right parietal but not frontal cortex enhances the ability to overcome task set inhibition during task-switching" by Sdoia, S., Zivi, P., Ferlazzo, F.
DOI: 10.6084/m9.figshare.11708889.v1
title: Untitled Item

description: ----