cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gsngnf
title: Occurrence Download

description: A dataset containing 13280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera frugiperda"
 ]
}

 The dataset includes 13280 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049206-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djhy6q
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Unonopsis megalophylla"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000057-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18772329
title: LINF_340008500

description: Mitochondrial chaperone BCS1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18772328
title: LINF_340008500

description: Mitochondrial chaperone BCS1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18771950
title: Human shielding from wolves facilitates jackal expansion across Europe -- dataset and code

description: Publicly available dataset and analysis code for:

Nathan Ranc, Christopher C. Wilmers, Luigi Maiorano, David I. Warton, Francisco Álvares, Francesca Cagnacci, Jennifer Hatlauf, Ilya Acosta-Pankov, Ovidiu Banea, Tomaž Berce, Jaroslav Červinka, Duško Ćirović, Nada Ćosić, László Gál, Giorgos Giannatos, Nuno F. Guimarães, Miklós Heltai, Gjorge Ivanov, József Lanszki, Luca Lapini, Peep Männil, Dime Melovski, Despina Migli, Marco Pavanello, Aleksandra Penezić, Anelia Petrova, Martin Šálek, Alexandra Sallay-Mosoi, Ivana Selanec, Aldin Selimovic, Tobia Sforna, Aleksandar Stojanov, László Szabó, Jasna Tarman, Igor Trbojević, Tijana Trbojević, Peter Urban, Miha Krofel. 2026. Human shielding from wolves facilitates jackal expansion across Europe. Nature Ecology & Evolution.

The dataset contains the following fields:



key: unique howling station identifier

country

transect_id: y unique transect identifier

presence: detection (1), non-detection (0)

survey_timestamp: date and time of survey, UTC

j_day_c1: trigonometric function of the survey julian date (see manuscript methods)

j_day_c2: trigonometric function of the survey julian date (see manuscript methods)

j_day_s1: trigonometric function of the survey julian date (see manuscript methods)

j_day_s2: trigonometric function of the survey julian date (see manuscript methods)

night_c1: trigonometric function of the time of survey (see manuscript methods)

night_c2: trigonometric function of the time of survey (see manuscript methods)

night_s1: trigonometric function of the time of survey (see manuscript methods)

night_s2: trigonometric function of the time of survey (see manuscript methods)

dist_origin: ditance from survey location to closest known origin location of jackals (see ms) in km

forest: forest cover in %

wolf: averaged wolf presence (0 = absence, 1 = sporadic, 2 = permanent edge, 3 = permanent core)

snow: average number of days with snow on the ground per year

listening log duration: duration of inter-repeat listening (log-transformed), in minutes

dist_human: distance to closest human development (log-transformed), in km

dist_water: distance to closest water body (log-transformed), in km

autocov: spatial autocorrelation (see manuscript for details)

all covariates with _sc: scaled covariate
DOI: 10.5281/zenodo.18771949
title: Human shielding from wolves facilitates jackal expansion across Europe -- dataset and code

description: Publicly available dataset and analysis code for:

Nathan Ranc, Christopher C. Wilmers, Luigi Maiorano, David I. Warton, Francisco Álvares, Francesca Cagnacci, Jennifer Hatlauf, Ilya Acosta-Pankov, Ovidiu Banea, Tomaž Berce, Jaroslav Červinka, Duško Ćirović, Nada Ćosić, László Gál, Giorgos Giannatos, Nuno F. Guimarães, Miklós Heltai, Gjorge Ivanov, József Lanszki, Luca Lapini, Peep Männil, Dime Melovski, Despina Migli, Marco Pavanello, Aleksandra Penezić, Anelia Petrova, Martin Šálek, Alexandra Sallay-Mosoi, Ivana Selanec, Aldin Selimovic, Tobia Sforna, Aleksandar Stojanov, László Szabó, Jasna Tarman, Igor Trbojević, Tijana Trbojević, Peter Urban, Miha Krofel. 2026. Human shielding from wolves facilitates jackal expansion across Europe. Nature Ecology & Evolution.

The dataset contains the following fields:



key: unique howling station identifier

country

transect_id: y unique transect identifier

presence: detection (1), non-detection (0)

survey_timestamp: date and time of survey, UTC

j_day_c1: trigonometric function of the survey julian date (see manuscript methods)

j_day_c2: trigonometric function of the survey julian date (see manuscript methods)

j_day_s1: trigonometric function of the survey julian date (see manuscript methods)

j_day_s2: trigonometric function of the survey julian date (see manuscript methods)

night_c1: trigonometric function of the time of survey (see manuscript methods)

night_c2: trigonometric function of the time of survey (see manuscript methods)

night_s1: trigonometric function of the time of survey (see manuscript methods)

night_s2: trigonometric function of the time of survey (see manuscript methods)

dist_origin: ditance from survey location to closest known origin location of jackals (see ms) in km

forest: forest cover in %

wolf: averaged wolf presence (0 = absence, 1 = sporadic, 2 = permanent edge, 3 = permanent core)

snow: average number of days with snow on the ground per year

listening log duration: duration of inter-repeat listening (log-transformed), in minutes

dist_human: distance to closest human development (log-transformed), in km

dist_water: distance to closest water body (log-transformed), in km

autocov: spatial autocorrelation (see manuscript for details)

all covariates with _sc: scaled covariate
DOI: 10.5281/zenodo.18772148
title: Dataset supporting the study: Chromatographic Profiling and Antifungal Activity of Essential Oils Against Candida albicans: Therapeutic Implications

description: This dataset contains raw and processed data obtained from the evaluation of the antifungal activity of essential oils against Candida albicans. It includes measurements of inhibition zones obtained by the agar disk diffusion method, experimental replicates, statistical analyses, and supporting laboratory records. These data support the findings and conclusions presented in the associated research article.
DOI: 10.5281/zenodo.18772147
title: Dataset supporting the study: Chromatographic Profiling and Antifungal Activity of Essential Oils Against Candida albicans: Therapeutic Implications

description: This dataset contains raw and processed data obtained from the evaluation of the antifungal activity of essential oils against Candida albicans. It includes measurements of inhibition zones obtained by the agar disk diffusion method, experimental replicates, statistical analyses, and supporting laboratory records. These data support the findings and conclusions presented in the associated research article.
DOI: 10.15468/dl.2uvq2p
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vigna caracalla"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcyxw6
title: Occurrence Download

description: A dataset containing 45486 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biological Station Wijster standard trapping program: Sampling event data for ground beetles (Coleoptera: Carabidae)"
 ]
}

 The dataset includes 45486 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000059-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18702258
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (HE data)

description: This repository contains raw H&E data for the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.5281/zenodo.18702259
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (HE data)

description: This repository contains raw H&E data for the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.6084/m9.figshare.31410321
title: Manuscript Animal Model - Value Rawdata

description: <b>ABSTRACT</b><b>Background</b>Ovarian cancer (OC) is often diagnosed at advanced stages, leading to extensive peritoneal carcinomatosis (PC) and poor prognosis. Although intraperitoneal drug delivery systems (iDDS) are promising to target residual microscopic disease after cytoreductive surgery, reproducible and clinically relevant murine PC models remain limited. This study compared two OVCAR-3-based intraperitoneal engraftment strategies (diffuse vs. localized) and evaluated the effects of cell inoculum density and basement membrane extract (BME) supplementation to identify a more robust and reliable PC model.<b>Methods</b>Immunodeficient female nu/nu mice were engrafted with luciferase-expressing human OVCAR-3 cells. In the localized implantation model, either 1×10⁶ or 4×10⁶ cells were implanted into the preperitoneal space behind the rectus abdominis to form localized tumors. Then, after evaluating the results, the 1×10⁶-cell group was additionally tested in the presence of basement membrane extract (BME). In the intraperitoneal dissemination model, 1×10⁶ cells were co-injected with BME to promote diffuse peritoneal spread. Tumor progression in both models was monitored weekly using bioluminescence imaging (BLI), and animals were sacrificed at predetermined time points for macroscopic, histological, and immunohistochemical analyses.<b>Results</b>In the localized implantation model, no differences were detected between 1×10⁶ and 4×10⁶ cells; therefore, 1×10⁶ was selected for subsequent experiments. Although the addition of BME initially increased tumor volume and partially attenuated the decline in BLI signal previously observed, the signal still progressively decreased over time. Histological analysis revealed extracellular matrix remodeling, apoptosis, and tumor regression, indicating limited long-term tumor viability in this localized model.In contrast, the intraperitoneal injection model generated a clinically relevant pattern of peritoneal dissemination. After an initial decrease, BLI signals showed a sustained increase, and necropsy confirmed multiple tumor nodules along the intestinal serosa, mesentery stomach, liver, and omentum.<b>Conclusions</b>The intraperitoneal injection model with the addition of BME more accurately reproduced the progression and distribution of human PC, providing a refined model for the preclinical evaluation of localized iDDS.
DOI: 10.6084/m9.figshare.31410321.v1
title: Manuscript Animal Model - Value Rawdata

description: <b>ABSTRACT</b><b>Background</b>Ovarian cancer (OC) is often diagnosed at advanced stages, leading to extensive peritoneal carcinomatosis (PC) and poor prognosis. Although intraperitoneal drug delivery systems (iDDS) are promising to target residual microscopic disease after cytoreductive surgery, reproducible and clinically relevant murine PC models remain limited. This study compared two OVCAR-3-based intraperitoneal engraftment strategies (diffuse vs. localized) and evaluated the effects of cell inoculum density and basement membrane extract (BME) supplementation to identify a more robust and reliable PC model.<b>Methods</b>Immunodeficient female nu/nu mice were engrafted with luciferase-expressing human OVCAR-3 cells. In the localized implantation model, either 1×10⁶ or 4×10⁶ cells were implanted into the preperitoneal space behind the rectus abdominis to form localized tumors. Then, after evaluating the results, the 1×10⁶-cell group was additionally tested in the presence of basement membrane extract (BME). In the intraperitoneal dissemination model, 1×10⁶ cells were co-injected with BME to promote diffuse peritoneal spread. Tumor progression in both models was monitored weekly using bioluminescence imaging (BLI), and animals were sacrificed at predetermined time points for macroscopic, histological, and immunohistochemical analyses.<b>Results</b>In the localized implantation model, no differences were detected between 1×10⁶ and 4×10⁶ cells; therefore, 1×10⁶ was selected for subsequent experiments. Although the addition of BME initially increased tumor volume and partially attenuated the decline in BLI signal previously observed, the signal still progressively decreased over time. Histological analysis revealed extracellular matrix remodeling, apoptosis, and tumor regression, indicating limited long-term tumor viability in this localized model.In contrast, the intraperitoneal injection model generated a clinically relevant pattern of peritoneal dissemination. After an initial decrease, BLI signals showed a sustained increase, and necropsy confirmed multiple tumor nodules along the intestinal serosa, mesentery stomach, liver, and omentum.<b>Conclusions</b>The intraperitoneal injection model with the addition of BME more accurately reproduced the progression and distribution of human PC, providing a refined model for the preclinical evaluation of localized iDDS.
DOI: 10.48650/5wyv-1q03
title: Brazil soy facilities map V1 (2024)

description: This dataset provides a comprehensive, publicly-accessible mapping of Brazil’s soy storage infrastructure, addressing longstanding gaps and inaccuracies in existing facility records. By integrating CONAB’s SICARM registry with Brazilian Federal Tax Agency data, Google sources, spatial proximity to soy fields, and AI-based visual verification, the dataset offers an accurate and validated view of soy-related storage sites.
DOI: 10.5281/zenodo.18701672
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - Myeloid)

description: This repository contains raw imaging mass cytometry (IMC) data for the myeloid cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.5281/zenodo.18701671
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - Myeloid)

description: This repository contains raw imaging mass cytometry (IMC) data for the myeloid cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.5281/zenodo.18701747
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - Tumor)

description: This repository contains raw imaging mass cytometry (IMC) data for the tumor cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.5281/zenodo.18701746
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - Tumor)

description: This repository contains raw imaging mass cytometry (IMC) data for the tumor cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.15468/dl.sqynh8
title: Occurrence Download

description: A dataset containing 99966 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreochromis niloticus"
 ]
}

 The dataset includes 99966 records from 269 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000025-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34636/dmportal/ivw0nw/rhrtlj
title: emo-bon_vfdb_megares.tar.gz

description: 724 alignment files in root directory
DOI: 10.5281/zenodo.18701781
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - T cell)

description: This repository contains raw imaging mass cytometry (IMC) data for the T cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.5281/zenodo.18701780
title: A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma (IMC data - T cell)

description: This repository contains raw imaging mass cytometry (IMC) data for the T cell panel the clear cell renal cell carcinoma study from Meyer et al., 2026. The code that was used to process and analyze the data is available at https://github.com/BodenmillerGroup/RCC_publication.
DOI: 10.15468/dl.nc5g4j
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Enicurus maculatus"
 ]
}

 The dataset includes 244 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000062-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31410555
title: supplementary_dataset_hybrid_pca_fcm_v1

description: This dataset contains structured acoustic–prosodic feature vectors derived from pediatric speech recordings for developmental language assessment. Extracted features include MFCC (1–13), fundamental frequency (F0), jitter, shimmer, harmonic-to-noise ratio, spectral centroid, speech rate, and temporal parameters.The dataset is intended for dimensionality reduction and clustering analysis using Principal Component Analysis (PCA) and Fuzzy C-Means (FCM). All features are organized in a tabular format suitable for machine learning and statistical modeling.
DOI: 10.6084/m9.figshare.31410555.v1
title: supplementary_dataset_hybrid_pca_fcm_v1

description: This dataset contains structured acoustic–prosodic feature vectors derived from pediatric speech recordings for developmental language assessment. Extracted features include MFCC (1–13), fundamental frequency (F0), jitter, shimmer, harmonic-to-noise ratio, spectral centroid, speech rate, and temporal parameters.The dataset is intended for dimensionality reduction and clustering analysis using Principal Component Analysis (PCA) and Fuzzy C-Means (FCM). All features are organized in a tabular format suitable for machine learning and statistical modeling.
DOI: 10.15468/dl.qf8m2a
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "TaxonKey is Decapoda"
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000063-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btz4db
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "OccurrenceStatus is Present",
 "TaxonKey is Pouteria stenophylla"
 ]
}

 The dataset includes 22 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000064-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34636/dmportal/ivw0nw/shvatz
title: emo-bon_vfdb_megares.tar.gz

description: 724 alignment files in root directory
DOI: 10.15468/dl.zwvn8t
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Loxocemus bicolor Cope, 1861"
 ]
}

 The dataset includes 398 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072150-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yb26a
title: Occurrence Download

description: A dataset containing 4413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is one of (IND.4_1, IND.30_1, IND.36_1, IND.35_1, IND.13_1, NPL.3_1, NPL.4_1, NPL.5_1, NPL.1_1, NPL.2_1, BTN.4_1, BTN.6_1, BTN.1_1, BTN.19_1, BTN.10_1, BTN.14_1, BTN.18_1, BTN.8_1, BTN.16_1, BTN.5_1, BTN.15_1, BTN.7_1, BTN.20_1, BTN.12_1, BTN.17_1, BTN.3_1, BTN.2_1, BTN.11_1, BTN.13_1, BTN.9_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Potamogeton, Artemisia, Nymphoides, Stuckenia, Persicaria, Rhododendron, Acacia, Bauhinia, Cercis, Dalbergia, Inga, Senegalia, Sesbania, Sesbania, Spatholobus, Vachellia, Alnus, Betula, Carpinus, Castanopsis, Quercus, Coffea, Mitragyna, Nyctanthes, Cinnamomum, Phoebe, Magnolia, Mallotus, Salix, Rubroshorea, Shorea, Bombax, Hibiscus, Terminalia, Trapa, Syzygium, Nymphaea, Victoria, Pinus, Carex, Cyperus, Cynodon, Miscanthus, Oryza, Phragmites, Saccharum, Nelumbo, Cannabis, Hippophae, Ficus, Ziziphus, Prunus, Rosa, Rubus, Ulmus, Boehmeria, Acer, Tetrastigma, Vitis)"
 ]
}

 The dataset includes 4413 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000066-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzw4mx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vigna virescens"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000069-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.868332
title: Occurrence Download

description: A dataset containing 40783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Castor fiber",
 "Year 1000-2026"
 ]
}

 The dataset includes 40783 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000068-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.