cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8858591.v1
title: Phytohormone involved in salt tolerance regulation of <i>Elaeagnus angustifolia</i> L. seedlings

description: Soil salinization is a serious problem for plant growth worldwide. Understanding the tolerance mechanisms of salt-tolerant plants is essential for development and utilization of saline-alkali land. The salt-tolerant tree species <i>Elaeagnus angustifolia</i> is utilized in landscaping and ecological restoration projects such as afforestation. In this work, we examined the changes in phytohormone levels and the expression of phytohormone-related genes in <i>E. angustifolia</i> seedlings under salt stress. We observed no changes in the biomass, leaf area, and the size of epidermal cells of <i>E. angustifolia</i> seedlings under low levels of NaCl (50 mM); however, when the NaCl concentration was increased, these parameters were significantly reduced. Comparison of the transcriptome data of the species seedlings under 0 and 150 mM NaCl showed that many hormone pathways are involved in the salt-tolerance response. Under salt stress, abscisic acid (ABA) and jasmonate (JA) contents increased significantly, whereas the contents of auxin (IAA), gibberellin (GA), cytokinins (CKs), and brassinosteroids (BRs) decreased significantly. We conclude that these changes could be responsible for the growth inhibition and increased salt resistance of <i>E. angustifolia</i> seedlings.
DOI: 10.6084/m9.figshare.22914583
title: Additional file 1 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 1. List of benchmarks with consolidate survey answers.
DOI: 10.6084/m9.figshare.22914586
title: Additional file 2 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 2. Review form.
DOI: 10.6084/m9.figshare.22914589.v1
title: Additional file 3 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 3. Uneditedsurvey responses.
DOI: 10.6084/m9.figshare.22914583.v1
title: Additional file 1 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 1. List of benchmarks with consolidate survey answers.
DOI: 10.6084/m9.figshare.22914586.v1
title: Additional file 2 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 2. Review form.
DOI: 10.6084/m9.figshare.22914589
title: Additional file 3 of Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

description: Additional file 3. Uneditedsurvey responses.
DOI: 10.6084/m9.figshare.7285742
title: Additional file 9: of Improved Macaca fascicularis gene annotation reveals evolution of gene expression profiles in multiple tissues

description: Table S5. The details of each M. fascicularis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7285742.v1
title: Additional file 9: of Improved Macaca fascicularis gene annotation reveals evolution of gene expression profiles in multiple tissues

description: Table S5. The details of each M. fascicularis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7285751
title: Additional file 3: of High-density genetic map construction and quantitative trait loci identification for growth traits in (Taxodium distichum var. distichum Ă T. mucronatum) Ă T. mucronatum

description: The 530 SLAF markers encompassed in the 21 SDRs. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.7285751.v1
title: Additional file 3: of High-density genetic map construction and quantitative trait loci identification for growth traits in (Taxodium distichum var. distichum Ă T. mucronatum) Ă T. mucronatum

description: The 530 SLAF markers encompassed in the 21 SDRs. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.7285775
title: Additional file 5: of High-density genetic map construction and quantitative trait loci identification for growth traits in (Taxodium distichum var. distichum Ă T. mucronatum) Ă T. mucronatum

description: The annotation of unigenes showing significant similarities to the SLAF markers within SDRs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.7285775.v1
title: Additional file 5: of High-density genetic map construction and quantitative trait loci identification for growth traits in (Taxodium distichum var. distichum Ă T. mucronatum) Ă T. mucronatum

description: The annotation of unigenes showing significant similarities to the SLAF markers within SDRs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.7285778
title: Additional file 3: of Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics

description: Table S3. Summary of the clean reads mapped to the silkworm reference genome. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7285778.v1
title: Additional file 3: of Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics

description: Table S3. Summary of the clean reads mapped to the silkworm reference genome. (XLSX 11 kb)
DOI: 10.15468/crt6sc
title: Sherkin Island Marine Station Phytoplankton Records from the Southwest Coast of Ireland. Series 1: Long-term data series from Roaringwater Bay/Long Island Bay and South of Sherkin Island, Co Cork 1980-2014

description: The dataset presented here is from the long-term monitoring of phytoplankton at 12 coastal water positions (stations) in south-west Ireland: Eight within Roaringwater Bay/Long Island Bay, and four from 1.5 km to 17.5 km offshore in open waters south of Sherkin Island, Co. Cork. Stations were visited approximately every 12 days from April to October each year, within a period from 1980-2014. Water samples were taken at set depths for each station and phytoplankton counts were recorded. Where water depth allowed, stations were usually sampled at the following depths: 0m, 2.5m, 5m, 10m, 15m, 20m, 25m, 30m, and 50m, ranging from a maximum depth of 5m in three stations to a depth of 50m in four stations. An additional depth of 7.5m was sampled at one station. The dataset includes standardized phytoplankton counts together with recorded location, date, water depth, water temperature, salinity, conductivity, Secchi disc estimate, tide height at time of sampling, sea conditions and weather conditions. Standard air temperature records from the manual weather station at Sherkin Island Marine Station covering the same time period, together with records from the automated weather station from 2004, offer comparisons with the marine records for climate-related studies (available from Met Éireann : The Irish Meteorological Service (online) c. 2023 [accessed 2023 July 17] https://www.met.ie/climate/available-data/historical-data).
DOI: 10.48597/bt3x-gws7
title: Measurement of Inorganics in precipitation at Nordmoen

description: Measurement of Inorganics in precipitation at Nordmoen
DOI: 10.48597/cd7b-zant
title: Measurement of Conductivity at Narbuvoll

description: Measurement of Conductivity at Narbuvoll
DOI: 10.6084/m9.figshare.7285796
title: Additional file 4: of Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics

description: Table S4. Expression levels of all genes across the four antennal samples. The accession number with â BGIBMGAâ was from SilkDB ( http://www.silkdb.org/silkdb/ ), and the others from GenBank in NCBI. A BLAST search was conducted using the all unique transcripts as query sequences against the protein non-redundant (nr) database in NCBI. The best BLAST hits and E-values are listed. (XLSX 2319 kb)
DOI: 10.48597/csmf-en4q
title: Measurement of Inorganics in air and particle phase at Hvasser

description: Measurement of Inorganics in air and particle phase at Hvasser
DOI: 10.48597/cspm-uap7
title: Measurement of Inorganics in precipitation at Nordmoen

description: Measurement of Inorganics in precipitation at Nordmoen
DOI: 10.48597/ctjd-2zjp
title: Measurement of Inorganics in precipitation at Svanvik

description: Measurement of Inorganics in precipitation at Svanvik
DOI: 10.6084/m9.figshare.7285796.v1
title: Additional file 4: of Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics

description: Table S4. Expression levels of all genes across the four antennal samples. The accession number with â BGIBMGAâ was from SilkDB ( http://www.silkdb.org/silkdb/ ), and the others from GenBank in NCBI. A BLAST search was conducted using the all unique transcripts as query sequences against the protein non-redundant (nr) database in NCBI. The best BLAST hits and E-values are listed. (XLSX 2319 kb)
DOI: 10.48597/cymg-h4xp
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.48597/d9xr-pqvm
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.48597/dack-zcz2
title: Measurement of 3-buten-2-one at Utö

description: Measurement of 3-buten-2-one at Utö
DOI: 10.48597/dgya-b42x
title: Measurement of Inorganics in precipitation at Kårvatn

description: Measurement of Inorganics in precipitation at Kårvatn
DOI: 10.48597/e88c-w8g3
title: Measurement of VOC (carbonyls) at Kosetice (NOAK)

description: Measurement of VOC (carbonyls) at Kosetice (NOAK)
DOI: 10.48597/eskw-ppft
title: Measurement of Hexanal at Utö

description: Measurement of Hexanal at Utö
DOI: 10.48597/ezyw-x4sq
title: Measurement of VOC (carbonyls) at Waldhof

description: Measurement of VOC (carbonyls) at Waldhof
DOI: 10.48597/f9hj-ywsf
title: Measurement of Nitrogen_dioxide at Lardal

description: Measurement of Nitrogen_dioxide at Lardal
DOI: 10.48597/fvec-5ppz
title: Measurement of Sulphur_dioxide at Hvasser

description: Measurement of Sulphur_dioxide at Hvasser
DOI: 10.48597/g34h-wtu4
title: Measurement of 2-oxopropanal at Utö

description: Measurement of 2-oxopropanal at Utö
DOI: 10.48597/ged5-9cfw
title: Measurement of Inorganics in precipitation at Skreådalen

description: Measurement of Inorganics in precipitation at Skreådalen
DOI: 10.48597/h4c5-dthg
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.48597/hkus-btxq
title: Measurement of Inorganics in precipitation at Skreådalen

description: Measurement of Inorganics in precipitation at Skreådalen
DOI: 10.15468/ut6fb4
title: Liste rouge des Odonates de France-Liste rouge des Odonates de métropole 2016

description: Le JDD est un jeu de données de référence sur les Odonates de métropole ayant servi à l'élaboration de la liste rouge en 2016
DOI: 10.48597/huvx-vnsw
title: Measurement of Inorganics in precipitation at Prestebakke

description: Measurement of Inorganics in precipitation at Prestebakke
DOI: 10.48597/jcdy-ku4q
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.48597/jq28-rx4n
title: Measurement of Inorganics in precipitation at Jergul

description: Measurement of Inorganics in precipitation at Jergul
DOI: 10.48597/jy7j-ee2m
title: Measurement of Inorganics in precipitation at Narbuvoll

description: Measurement of Inorganics in precipitation at Narbuvoll
DOI: 10.48597/k952-rpdc
title: Measurement of Inorganics in air and particle phase at Ny-Ålesund - Gruvebadet

description: Measurement of Inorganics in air and particle phase at Ny-Ålesund - Gruvebadet
DOI: 10.15468/eyb77x
title: Projet éolien (SEPE Les Mottes) sur les Communes de Aumâtre et Fontaine-le-Sec - Chauves-souris - Points d'écoute au sol

description: Liste des chauves-souris observées dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet éolien de la communauté de communes d'Oisemont
DOI: 10.48597/kdey-h6h7
title: Measurement of Inorganics in precipitation at Prestebakke

description: Measurement of Inorganics in precipitation at Prestebakke
DOI: 10.48597/m4ka-eb6h
title: Measurement of Nitrogen_dioxide at Prestebakke

description: Measurement of Nitrogen_dioxide at Prestebakke
DOI: 10.48597/mz6n-nst4
title: Measurement of Inorganics in precipitation at Løken

description: Measurement of Inorganics in precipitation at Løken
DOI: 10.48597/p3pc-ynsw
title: Measurement of pH at Tustervatn

description: Measurement of pH at Tustervatn
DOI: 10.6084/m9.figshare.7492076
title: The <i>Vibrio alginolyticus</i> T3SS effectors, Val1686 and Val1680, induce cell rounding, apoptosis and lysis of fish epithelial cells

description: <i>Vibrio alginolyticus</i> is a Gram-negative bacterium that is an opportunistic pathogen of both marine animals and people. Its pathogenesis likely involves type III secretion system (T3SS) mediated induction of rapid apoptosis, cell rounding and osmotic lysis of infected eukaryotic cells. Herein, we report that effector proteins, Val1686 and Val1680 from <i>V. alginolyticus</i>, were responsible for T3SS-mediated death of fish cells. Val1686 is a Fic-domain containing protein that not only contributed to cell rounding by inhibiting Rho guanosine triphosphatases (GTPases), but was requisite for the induction of apoptosis because the deletion mutant (Δ<i>val1686</i>) was severely weakened in its ability to induce cell rounding and apoptosis in fish cells. In addition, Val1686 alone was sufficient to induce cell rounding and apoptosis as evidenced by the transfection of Val1686 into fish cells. Importantly, the Fic-domain essential for cell rounding activity was equally important to activation of apoptosis of fish cells, indicating that apoptosis is a downstream event of Val1686-dependent GTPase inhibition. <i>V. alginolyticus</i> infection likely activates JNK and ERK pathways with sequential activation of caspases (caspase-8/-10, -9 and -3) and subsequent apoptosis. Val1680 contributed to T3SS-dependent lysis of fish cells in <i>V. alginolyticus</i>, but did not induce autophagy as has been reported for its homologue (VopQ) in <i>V. parahaemolyticus</i>. Together, Val1686 and Val1680 work together to induce apoptosis, cell rounding and cell lysis of <i>V. alginolyticus</i>-infected fish cells. These findings provide new insights into the mechanism of cell death caused by T3SS of <i>V. alginolyticus</i>.
DOI: 10.48597/p7g7-wc74
title: Measurement of Sulphate_corrected at Løken

description: Measurement of Sulphate_corrected at Løken
DOI: 10.48597/pcmd-4bw4
title: Measurement of Inorganics in precipitation at Jergul

description: Measurement of Inorganics in precipitation at Jergul
DOI: 10.48597/pjwf-bas6
title: Measurement of Butanales at Utö

description: Measurement of Butanales at Utö
DOI: 10.6084/m9.figshare.7492076.v1
title: The <i>Vibrio alginolyticus</i> T3SS effectors, Val1686 and Val1680, induce cell rounding, apoptosis and lysis of fish epithelial cells

description: <i>Vibrio alginolyticus</i> is a Gram-negative bacterium that is an opportunistic pathogen of both marine animals and people. Its pathogenesis likely involves type III secretion system (T3SS) mediated induction of rapid apoptosis, cell rounding and osmotic lysis of infected eukaryotic cells. Herein, we report that effector proteins, Val1686 and Val1680 from <i>V. alginolyticus</i>, were responsible for T3SS-mediated death of fish cells. Val1686 is a Fic-domain containing protein that not only contributed to cell rounding by inhibiting Rho guanosine triphosphatases (GTPases), but was requisite for the induction of apoptosis because the deletion mutant (Δ<i>val1686</i>) was severely weakened in its ability to induce cell rounding and apoptosis in fish cells. In addition, Val1686 alone was sufficient to induce cell rounding and apoptosis as evidenced by the transfection of Val1686 into fish cells. Importantly, the Fic-domain essential for cell rounding activity was equally important to activation of apoptosis of fish cells, indicating that apoptosis is a downstream event of Val1686-dependent GTPase inhibition. <i>V. alginolyticus</i> infection likely activates JNK and ERK pathways with sequential activation of caspases (caspase-8/-10, -9 and -3) and subsequent apoptosis. Val1680 contributed to T3SS-dependent lysis of fish cells in <i>V. alginolyticus</i>, but did not induce autophagy as has been reported for its homologue (VopQ) in <i>V. parahaemolyticus</i>. Together, Val1686 and Val1680 work together to induce apoptosis, cell rounding and cell lysis of <i>V. alginolyticus</i>-infected fish cells. These findings provide new insights into the mechanism of cell death caused by T3SS of <i>V. alginolyticus</i>.
DOI: 10.48597/pjwp-7f6k
title: Measurement of Nitrogen_dioxide at Søgne 1

description: Measurement of Nitrogen_dioxide at Søgne 1
DOI: 10.5281/zenodo.10726426
title: Sea ice data used for multisensor data fusion around Svalbard

description: This data include the NETCDF files in a case study for multisensor data fusion, being a supplementary material for the paper titled "Multisensor data fusion of operational sea ice observations around Svalbard", submitted to Frontiers in Marine Science.
DOI: 10.5281/zenodo.10726427
title: Sea ice data used for multisensor data fusion around Svalbard

description: This data include the NETCDF files in a case study for multisensor data fusion, being a supplementary material for the paper titled "Multisensor data fusion of operational sea ice observations around Svalbard", submitted to Frontiers in Marine Science.
DOI: 10.48597/qhae-bvyb
title: Measurement of Inorganics in precipitation at Skreådalen

description: Measurement of Inorganics in precipitation at Skreådalen
DOI: 10.48597/rsey-wk5s
title: Measurement of Inorganics in precipitation at Kårvatn

description: Measurement of Inorganics in precipitation at Kårvatn
DOI: 10.48597/rt3b-4b62
title: Measurement of Inorganics in air and particle phase at Valle

description: Measurement of Inorganics in air and particle phase at Valle
DOI: 10.48597/rxft-2wtk
title: Measurement of Inorganics in precipitation at Skreådalen

description: Measurement of Inorganics in precipitation at Skreådalen
DOI: 10.48597/s8q6-6jce
title: Measurement of Ethanedial at Utö

description: Measurement of Ethanedial at Utö
DOI: 10.48597/sd9u-pamg
title: Measurement of Benzaldehyde at Utö

description: Measurement of Benzaldehyde at Utö
DOI: 10.48597/tdvd-h7f6
title: Measurement of Nitrogen_dioxide at Svanvik

description: Measurement of Nitrogen_dioxide at Svanvik
DOI: 10.48597/tq7r-4uav
title: Measurement of Nitrogen_dioxide at Ny-Ålesund - Gruvebadet

description: Measurement of Nitrogen_dioxide at Ny-Ålesund - Gruvebadet
DOI: 10.48597/tsce-fn4u
title: Measurement of Inorganics in precipitation at Møsvatn

description: Measurement of Inorganics in precipitation at Møsvatn
DOI: 10.48597/u8b5-npyg
title: Measurement of Inorganics in air and particle phase at Søgne 1

description: Measurement of Inorganics in air and particle phase at Søgne 1
DOI: 10.48597/ub3j-7cs6
title: Measurement of Sulphate_corrected at Høylandet

description: Measurement of Sulphate_corrected at Høylandet
DOI: 10.48597/uhbf-bren
title: Measurement of Inorganics in precipitation at Valdalen

description: Measurement of Inorganics in precipitation at Valdalen
DOI: 10.48597/v3yb-ctky
title: Measurement of Inorganics in precipitation at Namsvatn

description: Measurement of Inorganics in precipitation at Namsvatn
DOI: 10.48597/v6e8-dp5m
title: Measurement of Inorganics in precipitation at Nordmoen

description: Measurement of Inorganics in precipitation at Nordmoen
DOI: 10.48597/vhzd-2eew
title: Measurement of Inorganics in precipitation at Solhomfjell

description: Measurement of Inorganics in precipitation at Solhomfjell
DOI: 10.48597/vmdy-7w8r
title: Measurement of Inorganics in precipitation at Skreådalen

description: Measurement of Inorganics in precipitation at Skreådalen
DOI: 10.48597/vn8n-ujce
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.48597/wags-mvze
title: Measurement of Inorganics in air and particle phase at Høylandet

description: Measurement of Inorganics in air and particle phase at Høylandet
DOI: 10.48597/wm3p-b5hp
title: Measurement of Inorganics in precipitation at Hurdal

description: Measurement of Inorganics in precipitation at Hurdal
DOI: 10.48597/wufq-q35n
title: Measurement of Inorganics in precipitation at Ny-Ålesund

description: Measurement of Inorganics in precipitation at Ny-Ålesund
DOI: 10.6084/m9.figshare.7285814.v1
title: Additional file 10: of Landscape of genomic alterations in high-grade serous ovarian cancer from exceptional long- and short-term survivors

description: All Mutect mutations 4. All SNV mutations called by Mutect and annotated by Oncotator for samples LTS-008_T, LTS-009_T, LTS-010_T, LTS-011_T, LTS-012_T, LTS-013_T, LTS-014_T, LTS-015_T, LTS-016_T. (TXT 13456 kb)
DOI: 10.48597/xapz-us7f
title: Measurement of 2-propenal at Utö

description: Measurement of 2-propenal at Utö
DOI: 10.48597/xfsp-xxq6
title: Measurement of Inorganics in precipitation at Tustervatn

description: Measurement of Inorganics in precipitation at Tustervatn
DOI: 10.6084/m9.figshare.14101556
title: Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma

description: Long non-coding RNAs (lncRNAs), as one common type of non-coding RNAs, play a critical role in the tumorigenesis and development of hepatocellular carcinoma (HCC). In the current study, we aimed to assess the correlation between lncRNAs expression levels and prognosis of HCC patients. A lncRNA-based signature was also developed to predict the prognosis of HCC in this work. The lncRNAs expression profiles in tissues of tumor and para-carcinoma were obtained from The Cancer Genome Atlas (TCGA) database. The lncRNA-based prognostic model was established by least absolute shrinkage and selection operator (LASSO). The multivariate Cox-regression analysis was applied to identify the independent risk factors and subsequently developed a prognostic nomogram. Based on the co-expression analyses, we identiﬁed the lncRNA-related mRNAs and performed the biological function analysis. Between HCC and para-carcinoma tissues, 220 differentially expressed lncRNAs were filtered. Among these lncRNAs, 19 lncRNAs were identified as prognostic factors and were used to build a prognostic signature of overall survival (OS). Furthermore, a nomogram with high performance for predicting the OS of HCC patients (C-index: 0.779) by combining the 19-lncRNA signature (P &lt; 0.001) and clinicopathologic factors including HBV (P = 0.005) and stage (P =0.017) was established. Functional enrichment analysis revealed that 19 lncRNAs had potential effects on tumor cell proliferation in HCC. In summary, we established a 19-lncRNA signature to predict the prognosis of HCC patients, which may perform a crucial role in guiding the management of HCC.
DOI: 10.48597/xg53-6pj3
title: Measurement of Precipitation_amount at Svratouch

description: Measurement of Precipitation_amount at Svratouch
DOI: 10.48597/xkkq-8u7x
title: Measurement of Nitrogen_dioxide at Jergul

description: Measurement of Nitrogen_dioxide at Jergul
DOI: 10.48597/yed7-hpdr
title: Measurement of Inorganics in precipitation at Valdalen

description: Measurement of Inorganics in precipitation at Valdalen
DOI: 10.48597/ynkp-khjt
title: Measurement of Inorganics in precipitation at Voss

description: Measurement of Inorganics in precipitation at Voss