cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10675070
title: Raw data (Evaporation) from Characterization of interface properties of fluids by evaporation of a capillary bridge

description: The surface properties between two non-miscible fluids are key elements to understand mass transfer, chemistry and bio-chemistry at interfaces. In this paper, surface properties are investigated in evaporating and non-evaporating conditions. A capillary bridge between two large plates (similarly as a Hele-Shaw cell) is considered. The temporal evolution of surface forces and mass transfers due to evaporation of the liquid are measured. The force depends on surface properties of the substrate. It is adhesive in the wetting case and repulsive in the non-wetting case. The force is also shown to depend linearly on the volume of the capillary bridge <i>F</i> ∝ <i>V</i><sub>0</sub> and inversely to the height of the bridge. Modelling is performed to characterize both surface force and evaporation properties of the capillary bridge. The evaporation is shown to be diffusion driven and is decoupled from the bridge mechanics.
DOI: 10.6084/m9.figshare.10675076
title: Raw data (Diffusion) from Characterization of interface properties of fluids by evaporation of a capillary bridge

description: The surface properties between two non-miscible fluids are key elements to understand mass transfer, chemistry and bio-chemistry at interfaces. In this paper, surface properties are investigated in evaporating and non-evaporating conditions. A capillary bridge between two large plates (similarly as a Hele-Shaw cell) is considered. The temporal evolution of surface forces and mass transfers due to evaporation of the liquid are measured. The force depends on surface properties of the substrate. It is adhesive in the wetting case and repulsive in the non-wetting case. The force is also shown to depend linearly on the volume of the capillary bridge <i>F</i> ∝ <i>V</i><sub>0</sub> and inversely to the height of the bridge. Modelling is performed to characterize both surface force and evaporation properties of the capillary bridge. The evaporation is shown to be diffusion driven and is decoupled from the bridge mechanics.
DOI: 10.6084/m9.figshare.10673816
title: Processed editing efficiency data

description: CSVs containing designed sgRNA-target sites and base editing outcomes across multiple replicates.
DOI: 10.6084/m9.figshare.10675070.v1
title: Raw data (Evaporation) from Characterization of interface properties of fluids by evaporation of a capillary bridge

description: The surface properties between two non-miscible fluids are key elements to understand mass transfer, chemistry and bio-chemistry at interfaces. In this paper, surface properties are investigated in evaporating and non-evaporating conditions. A capillary bridge between two large plates (similarly as a Hele-Shaw cell) is considered. The temporal evolution of surface forces and mass transfers due to evaporation of the liquid are measured. The force depends on surface properties of the substrate. It is adhesive in the wetting case and repulsive in the non-wetting case. The force is also shown to depend linearly on the volume of the capillary bridge <i>F</i> ∝ <i>V</i><sub>0</sub> and inversely to the height of the bridge. Modelling is performed to characterize both surface force and evaporation properties of the capillary bridge. The evaporation is shown to be diffusion driven and is decoupled from the bridge mechanics.
DOI: 10.6084/m9.figshare.10675076.v1
title: Raw data (Diffusion) from Characterization of interface properties of fluids by evaporation of a capillary bridge

description: The surface properties between two non-miscible fluids are key elements to understand mass transfer, chemistry and bio-chemistry at interfaces. In this paper, surface properties are investigated in evaporating and non-evaporating conditions. A capillary bridge between two large plates (similarly as a Hele-Shaw cell) is considered. The temporal evolution of surface forces and mass transfers due to evaporation of the liquid are measured. The force depends on surface properties of the substrate. It is adhesive in the wetting case and repulsive in the non-wetting case. The force is also shown to depend linearly on the volume of the capillary bridge <i>F</i> ∝ <i>V</i><sub>0</sub> and inversely to the height of the bridge. Modelling is performed to characterize both surface force and evaporation properties of the capillary bridge. The evaporation is shown to be diffusion driven and is decoupled from the bridge mechanics.
DOI: 10.6084/m9.figshare.10675082.v1
title: Raw data (Force support) from Characterization of interface properties of fluids by evaporation of a capillary bridge

description: The surface properties between two non-miscible fluids are key elements to understand mass transfer, chemistry and bio-chemistry at interfaces. In this paper, surface properties are investigated in evaporating and non-evaporating conditions. A capillary bridge between two large plates (similarly as a Hele-Shaw cell) is considered. The temporal evolution of surface forces and mass transfers due to evaporation of the liquid are measured. The force depends on surface properties of the substrate. It is adhesive in the wetting case and repulsive in the non-wetting case. The force is also shown to depend linearly on the volume of the capillary bridge <i>F</i> ∝ <i>V</i><sub>0</sub> and inversely to the height of the bridge. Modelling is performed to characterize both surface force and evaporation properties of the capillary bridge. The evaporation is shown to be diffusion driven and is decoupled from the bridge mechanics.
DOI: 10.6084/m9.figshare.10673441
title: dataset-armor-3d-rep-weekly_1574352046564.nc

description: The Global ARMOR3D L4 Reprocessed dataset is obtained by combining satellite (Sea Level Anomalies, Geostrophic Surface Currents, Sea Surface Temperature) and in-situ (Temperature and Salinity profiles) observations through statistical methods.<br>
DOI: 10.17632/2hxv9cr73m.1
title: N-(3-oxododecanoyl)-homoserine lactone regulates intracellular calcium of MC3T3 osteoblasts

description: Pseudomonas aeruginosa (P. aeruginosa) is associated with periapical periodontitis. The lesions are characterized by a disorder in osteoblast metabolism. Quorum sensing molecular N-(3-oxododecanoyl)-homoserine lactone (AHL) is secreted by P. aeruginosa and governs the expression of numerous virulence factors. AHL can trigger intracellular calcium ([Ca²⁺]i) fluctuations in many host cells. However, it is unclear whether AHL can regulate osteoblast metabolism by affecting [Ca²⁺]i changes or its spatial correlation. We explored AHL-induced apoptosis and differentiation in pre-osteoblastic MC3T3-E1 cells and evaluated [Ca²⁺]i mobilization using several extraction methods. The spatial distribution pattern of [Ca²⁺]i among cells was investigated by Moran's I, an index of spatial autocorrelation. We found that 30 μM and 50 μM AHL triggered opposing osteoblast fates. At 50 μM, AHL inhibited osteoblast differentiation by promoting mitochondrial-dependent apoptosis and negatively regulating osteogenic marker genes, including Runx2, Osterix, bone sialoprotein (Bsp), and osteocalcin (OCN). In contrast, prolonged treatment with 30 μM AHL promoted osteoblast differentiation concomitantly with cell apoptosis. The elevation of [Ca²⁺]i levels in osteoblasts treated with 50 μM AHL was spatially autocorrelated, while no such phenomenon was observed in 30 μM AHL-treated osteoblasts. The blocking of cell-to-cell spatial autocorrelation in the osteoblasts provoked by 50 μM AHL significantly inhibited apoptosis and partially restored differentiation. Our observations suggest that AHL affects the fate of osteoblasts (apoptosis and differentiation) by affecting the spatial correlation of [Ca²⁺]i changes. Thus, AHL acts as a double-edged sword for osteoblast function. Please cite this article below if using any data from this dataset. Guo J, Wang Z, Weng Y, Yuan H, Yoshida K, Ikegame M, Uchibe K, Kamioka H, Ochiai K, Okamura H, Qiu L. N-(3-oxododecanoyl)-homoserine lactone regulates osteoblast apoptosis and differentiation by mediating intracellular calcium. Cellular Signalling. 2020 Aug 18:109740. https://doi.org/10.1016/j.cellsig.2020.109740
DOI: 10.21954/ou.rd.10673132
title: Citation Knowledge based Dataset

description: This dataset contains information from scientific publications published by authors who have published papers in the RecSys conference. It contains four files which have information extracted from scientific publications. The details of each file is explained below :<b><br></b>i) all_authors.tsv : This file contains the details of authors who published research papers in the RecSys conference. The details include: authors' identifier in various forms, such as number, orcid id, dblp url, dblp key and google scholar url, authors' first name, last name and their affiliation (where they work)<b><br></b>ii) all_publications.tsv : This file contains the details of publications authored by the authors mentioned in the all_authors.tsv file (Please note the list of publications does not contain all the authored publications of the authors, refer to the publication for further details). The details include publications' identifier in different forms (such as number, dblp key, dblp url, dblp key, google scholar url), title, filtered title, published date, published conference and paper abstract.<b><br></b>iii) selected_author_publications-information.tsv : This file consists of identifiers of authors and their publications. Here, we provide the information of selected authors and their publications used for our experiment.<b><br></b>iv) selected_publication_citations-information.tsv : This file contains the information of the selected publications which consists of both citing and cited papers’ information used in our experiment. It consists of identifier of citing paper, identifier of cited paper, citation title, citation filtered title, the sentence before the citation is mentioned, citing sentence, the sentence after the citation is mentioned, citation position (section), and citation type (citing intention).Please note, it does not contain information of all the citations cited in the publications. For more detail, please refer to the paper.<br>If you are using this dataset, please cite our paper (Exploiting Citation Knowledge in Personalised Recommendation of Recent Scientific Publications) published in LREC2020.<br>This dataset is available for research purposes only.
DOI: 10.6084/m9.figshare.10669322
title: RTP coefficients Westervelt et al ACP

description: RTP coefficients from Westervelt et al. (2019) ACP
DOI: 10.6084/m9.figshare.10660673
title: The effect of vehicle countermeasures and age on human volunteer kinematics during evasive swerving events

description: <b>Objective:</b> Emergency maneuvers such as evasive swerving often precede a crash. These events are typically low-acceleration, time-extended events where the inertial forces have the potential to cause changes to the occupant’s initial state (initial posture, position, muscle tension). The objective of this study was to systematically quantify the kinematics of pediatric and adult human volunteers during simulated pre-crash evasive swerving maneuvers and evaluate the effect of age and two vehicle-based countermeasures. <b>Methods:</b> A novel laboratory device was designed to expose subjects to non-injurious loading conditions that mimic real-world evasive swerving events. A four-cycle oscillatory lateral pulse with a maximum acceleration of 0.72 g (0.53 g for the first lateral movement in the first cycle) was applied. Forty seat belt restrained subjects across four age groups – 9-11 years (<i>n</i> = 10), 12-14 years (<i>n</i> = 10), 15-17 years (<i>n</i> = 10) and 18-40 years (<i>n</i> = 10) – were exposed to a series of test conditions (baseline, pre-pretensioned seat belt, sculpted vehicle seat with and without inflated torso bolsters) while their kinematics were captured using 3 D motion capture and muscle activity was recorded. Reaction loads were collected from the shoulder belt and footrest. Data are presented for the first cycle only. <b>Results:</b> Pre-pretensioning the shoulder belt before the onset of acceleration had the greatest restraining effect on the head and trunk for all age groups. In the pre-pretensioning trials, compared to baseline, subjects exhibited 34% and 33% less head excursion, into and out of the shoulder belt respectively. Similar reductions were observed with pre-pretensioning for trunk excursion (45% and 53% reductions, in and out of the belt respectively). Inflating seat torso bolsters reduced lateral kinematics relative to baseline but to a lesser extent than the pre-pretensioner (Head Out of belt: 11%; Head Into Belt: 32% and Trunk Out of Belt: 15%; Trunk Into Belt: 27%). Although there was no overall effect of age on the magnitude of lateral displacement, different age groups employed various neuromuscular strategies to control their kinematics. <b>Conclusion:</b> A pre-pretensioner was an effective vehicle countermeasure during evasive swerving maneuvers as it substantially reduced lateral head and trunk displacement for all age groups. Providing lateral restraint via a sculpted vehicle seat was less effective as the geometry of the torso bolsters when inflated did not provide substantial lateral support.
DOI: 10.6084/m9.figshare.10660673.v1
title: The effect of vehicle countermeasures and age on human volunteer kinematics during evasive swerving events

description: <b>Objective:</b> Emergency maneuvers such as evasive swerving often precede a crash. These events are typically low-acceleration, time-extended events where the inertial forces have the potential to cause changes to the occupant’s initial state (initial posture, position, muscle tension). The objective of this study was to systematically quantify the kinematics of pediatric and adult human volunteers during simulated pre-crash evasive swerving maneuvers and evaluate the effect of age and two vehicle-based countermeasures. <b>Methods:</b> A novel laboratory device was designed to expose subjects to non-injurious loading conditions that mimic real-world evasive swerving events. A four-cycle oscillatory lateral pulse with a maximum acceleration of 0.72 g (0.53 g for the first lateral movement in the first cycle) was applied. Forty seat belt restrained subjects across four age groups – 9-11 years (<i>n</i> = 10), 12-14 years (<i>n</i> = 10), 15-17 years (<i>n</i> = 10) and 18-40 years (<i>n</i> = 10) – were exposed to a series of test conditions (baseline, pre-pretensioned seat belt, sculpted vehicle seat with and without inflated torso bolsters) while their kinematics were captured using 3 D motion capture and muscle activity was recorded. Reaction loads were collected from the shoulder belt and footrest. Data are presented for the first cycle only. <b>Results:</b> Pre-pretensioning the shoulder belt before the onset of acceleration had the greatest restraining effect on the head and trunk for all age groups. In the pre-pretensioning trials, compared to baseline, subjects exhibited 34% and 33% less head excursion, into and out of the shoulder belt respectively. Similar reductions were observed with pre-pretensioning for trunk excursion (45% and 53% reductions, in and out of the belt respectively). Inflating seat torso bolsters reduced lateral kinematics relative to baseline but to a lesser extent than the pre-pretensioner (Head Out of belt: 11%; Head Into Belt: 32% and Trunk Out of Belt: 15%; Trunk Into Belt: 27%). Although there was no overall effect of age on the magnitude of lateral displacement, different age groups employed various neuromuscular strategies to control their kinematics. <b>Conclusion:</b> A pre-pretensioner was an effective vehicle countermeasure during evasive swerving maneuvers as it substantially reduced lateral head and trunk displacement for all age groups. Providing lateral restraint via a sculpted vehicle seat was less effective as the geometry of the torso bolsters when inflated did not provide substantial lateral support.
DOI: 10.6084/m9.figshare.10659686
title: Presence (1) or absence (0) of biochemically characterized electron bifurcating or ion translocating Fd oxidoreductase enzyme homologs in the genomes of H2 oxidizing methanogenic or acetogenic organisms. The genome of a single strain within each taxonomic species was subjected to analysis. from Bioenergetic constraints on the origin of autotrophic metabolism

description: Autotrophs form the base of all complex food webs and seemingly have done so since early in Earth history. Phylogenetic evidence suggests that early autotrophs were anaerobic, used CO<sub>2</sub> as both an oxidant and carbon source, were dependent on H<sub>2</sub> as an electron donor, and used iron-sulfur proteins (termed ferredoxins) as a primary electron carrier. However, the reduction potential of H<sub>2</sub> is not typically low enough to efficiently reduce ferredoxin. Instead, in modern strictly anaerobic and H<sub>2</sub>-dependent autotrophs, ferredoxin reduction is accomplished using one of several recently evolved enzymatic mechanisms, including electron bifurcating and coupled ion translocating mechanisms. These observations raise the intriguing question of why anaerobic autotrophs adopted ferredoxins as central electron carriers only to have to evolve complex machinery to reduce them. Here, we report calculated reduction potentials for H<sub>2</sub> as a function of observed environmental H<sub>2</sub> concentration, pH and temperature. Results suggest that a combination of alkaline pH and high H<sub>2</sub> concentration yield H<sub>2</sub> reduction potentials low enough to efficiently reduce ferredoxins. Hyperalkaline, H<sub>2</sub> rich environments have existed in discrete locations throughout Earth history where ultramafic minerals are undergoing hydration through the process of serpentinization. These results suggest that serpentinizing systems, which would have been common on early Earth, naturally produced conditions conducive to the emergence of H<sub>2</sub>-dependent autotrophic life. The primitive process of hydrogenotrophic methanogenesis is used to examine potential changes in methanogenesis and Fd reduction pathways as these organisms diversified away from serpentinizing environments.This article is part of the theme issue ‘Serpentinite in the earth system’.
DOI: 10.17632/jtnjk4h763.1
title: BLT.20.258152_Zhu_data_respository

description: The supplementary materials for the article of "Fangcang shelter hospitals and control of the COVID-19 epidemic, Wuhan, China" in the WHO bulletin. It provides the figures showing the available beds in designated and Fangcang shelter hospitals, model details, and the formula of basic reproduction number R0 and instantaneous risk index as R0(t). Also, the data creating all the figures in the paper are provided.
DOI: 10.6084/m9.figshare.10659680
title: Habitat type and location and the temperature, pH, and dissolved H2 concentrations in specified environments. from Bioenergetic constraints on the origin of autotrophic metabolism

description: Autotrophs form the base of all complex food webs and seemingly have done so since early in Earth history. Phylogenetic evidence suggests that early autotrophs were anaerobic, used CO<sub>2</sub> as both an oxidant and carbon source, were dependent on H<sub>2</sub> as an electron donor, and used iron-sulfur proteins (termed ferredoxins) as a primary electron carrier. However, the reduction potential of H<sub>2</sub> is not typically low enough to efficiently reduce ferredoxin. Instead, in modern strictly anaerobic and H<sub>2</sub>-dependent autotrophs, ferredoxin reduction is accomplished using one of several recently evolved enzymatic mechanisms, including electron bifurcating and coupled ion translocating mechanisms. These observations raise the intriguing question of why anaerobic autotrophs adopted ferredoxins as central electron carriers only to have to evolve complex machinery to reduce them. Here, we report calculated reduction potentials for H<sub>2</sub> as a function of observed environmental H<sub>2</sub> concentration, pH and temperature. Results suggest that a combination of alkaline pH and high H<sub>2</sub> concentration yield H<sub>2</sub> reduction potentials low enough to efficiently reduce ferredoxins. Hyperalkaline, H<sub>2</sub> rich environments have existed in discrete locations throughout Earth history where ultramafic minerals are undergoing hydration through the process of serpentinization. These results suggest that serpentinizing systems, which would have been common on early Earth, naturally produced conditions conducive to the emergence of H<sub>2</sub>-dependent autotrophic life. The primitive process of hydrogenotrophic methanogenesis is used to examine potential changes in methanogenesis and Fd reduction pathways as these organisms diversified away from serpentinizing environments.This article is part of the theme issue ‘Serpentinite in the earth system’.
DOI: 10.6084/m9.figshare.10659686.v1
title: Presence (1) or absence (0) of biochemically characterized electron bifurcating or ion translocating Fd oxidoreductase enzyme homologs in the genomes of H2 oxidizing methanogenic or acetogenic organisms. The genome of a single strain within each taxonomic species was subjected to analysis. from Bioenergetic constraints on the origin of autotrophic metabolism

description: Autotrophs form the base of all complex food webs and seemingly have done so since early in Earth history. Phylogenetic evidence suggests that early autotrophs were anaerobic, used CO<sub>2</sub> as both an oxidant and carbon source, were dependent on H<sub>2</sub> as an electron donor, and used iron-sulfur proteins (termed ferredoxins) as a primary electron carrier. However, the reduction potential of H<sub>2</sub> is not typically low enough to efficiently reduce ferredoxin. Instead, in modern strictly anaerobic and H<sub>2</sub>-dependent autotrophs, ferredoxin reduction is accomplished using one of several recently evolved enzymatic mechanisms, including electron bifurcating and coupled ion translocating mechanisms. These observations raise the intriguing question of why anaerobic autotrophs adopted ferredoxins as central electron carriers only to have to evolve complex machinery to reduce them. Here, we report calculated reduction potentials for H<sub>2</sub> as a function of observed environmental H<sub>2</sub> concentration, pH and temperature. Results suggest that a combination of alkaline pH and high H<sub>2</sub> concentration yield H<sub>2</sub> reduction potentials low enough to efficiently reduce ferredoxins. Hyperalkaline, H<sub>2</sub> rich environments have existed in discrete locations throughout Earth history where ultramafic minerals are undergoing hydration through the process of serpentinization. These results suggest that serpentinizing systems, which would have been common on early Earth, naturally produced conditions conducive to the emergence of H<sub>2</sub>-dependent autotrophic life. The primitive process of hydrogenotrophic methanogenesis is used to examine potential changes in methanogenesis and Fd reduction pathways as these organisms diversified away from serpentinizing environments.This article is part of the theme issue ‘Serpentinite in the earth system’.
DOI: 10.17632/z7ms93rsx9.1
title: SARS-CoV-2 and Pyroptosis

description: Studies that focus on understanding and describing the pathogenic mechanisms that trigger the most serious and lethal manifestations of COVID-19 are necessary. Here, we show that SARS-CoV-2 triggers pyroptosis in human primary monocytes, either by experimental or natural infection. We further demonstrate that SARS-CoV-2-induced pyroptosis is dependent on inflammasome engagement, as judged by enhanced levels of caspase-1 and IL-1β activation. Monocytes that survive upon infection have reduced ability to express HLA-DR, likely impairing the antigen presentation. Moreover, the antiretroviral protease inhibitor atazanavir could prevent SARS-CoV-2-induced pyroptosis