cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.42n44/3
title: 30%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 30% susceptible, 70% resistant cells.
DOI: 10.5061/dryad.5v3b5/1
title: FigureS1

description: FIGURE S1. The effects of species-specific positive selection on effective population size  and divergence time estimates of the shallow (top) and moderate-depth (bottom) species tree models. Results are shown for (a-c), (d-f), (g-i), and (j-l) for simulated datasets consisting of 1-locus (a, d, g, j), 2-loci (b, e, h, k), and 10-loci (c, f, i, l). The mean (points) and standard deviation (error bars) of parameter estimates based on 200 replicates are shown for three different Species-AB divergence times: recent (blue), medium (black), and ancient (red). Each panel is split into two subpanels representing 5 (left of dotted line) or 20 (right of dotted line) haplotypes sampled per species. A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01), strong (“S”, s = 0.10), and very strong (“VS”, s = 0.5) selection coefficients.
DOI: 10.5061/dryad.5v3b5/2
title: FigureS2

description: FIGURE S2. The effects of species-specific positive selection on effective population size  and divergence time estimates of the deep species tree model. Results are shown for (a-c), (d-f), (g-i), and (j-l) for simulated datasets consisting of 1-locus (a, d, g, j), 2-loci (b, e, h, k), and 10-loci (c, f, i, l). The mean (points) and standard deviation (error bars) of parameter estimates based on 200 replicates are shown for three different Species-AB divergence times: 0.001 (blue), 0.005 (black), and 0.009 (red). Each panel is split into two subpanels representing 5 (left of dotted line) or 20 (right of dotted line) haplotypes sampled per species. A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01), strong (“S”, s = 0.10), and very strong (“VS”, s = 0.5) selection coefficients.
DOI: 10.5061/dryad.5v3b5/3
title: FigureS3

description: FIGURE S3. The effects of species-specific positive selection on posterior probabilities of species hypotheses of the shallow and moderate-depth species tree models. Results are shown for simulated datasets consisting of 1-locus (a, d, g, j), 2-loci (b, e, h, k), and 10-loci (c, f, i, l). The mean (points) and standard deviation (error bars) of parameter estimates based on 200 replicates are shown for three different Species-AB divergence times: recent (blue), medium (black), and ancient (red). Each panel is split into two subpanels representing 5 (left of dotted line) or 20 (right of dotted line) haplotypes sampled per species. A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01), strong (“S”, s = 0.10), and very strong (“VS”, s = 0.5) selection coefficients.
DOI: 10.5061/dryad.5v3b5/4
title: FigureS4

description: FIGURE S4. The effects of species-specific positive selection on posterior probabilities of species hypotheses of the deep species tree model. Results are shown for simulated datasets consisting of 1-locus (a, d, g, j), 2-loci (b, e, h, k), and 10-loci (c, f, i, l). The mean (points) and standard deviation (error bars) of parameter estimates based on 200 replicates are shown for three different Species-AB divergence times: 0.001 (blue), 0.005 (black), and 0.009 (red). Each panel is split into two subpanels representing 5 (left of dotted line) or 20 (right of dotted line) haplotypes sampled per species. A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01), strong (“S”, s = 0.10), and very strong (“VS”, s = 0.5) selection coefficients.
DOI: 10.5061/dryad.5v3b5/5
title: FigureS5

description: FIGURE S5. The effects of selection on species tree estimates for the moderate species tree simulations. Violin plots show the distribution of posterior probabilities of the correct rooted species topology (PABC, blue) and incorrect topology (PBCA, yellow) across 200 replicates (mean shown in black) for datasets consisting of 1-locus (bottom), 2-loci (middle), and 10-loci (top) that were simulated with either 5 (left) or 20 samples per species (right) under three different Species-AB divergence times (from left to right): 0.0001 (blue), 0.0005 (black), and 0.0009 (red). A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01, light red), strong (“S”, s = 0.10, medium red), and very strong (“VS”, s = 0.5, dark red) selection coefficients.
DOI: 10.5061/dryad.5v3b5/6
title: FigureS6

description: FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations. Violin plots show the distribution of posterior probabilities of the correct rooted species topology (PABC, blue) and incorrect topology (PBCA, yellow) across 200 replicates (mean shown in black) for datasets consisting of 1-locus (bottom), 2-loci (middle), and 10-loci (top) that were simulated with either 5 (left) or 20 samples per species (right) under three different Species-AB divergence times (from left to right): 0.001 (blue), 0.005 (black), and 0.009 (red). A color gradient ranging from white to dark gray is used to indicate the different percentages of loci under selection: 0% (neutral, white), 10%, 20%, 50% and 100% (dark gray). For simulations with selection, we varied the strength of selection: weak (“W”, s = 0.01, light red), strong (“S”, s = 0.10, medium red), and very strong (“VS”, s = 0.5, dark red) selection coefficients.
DOI: 10.5061/dryad.668g444/3
title: Howland_R.tar.gz

description: Sample unprocessed neutral simulation output (see README for experiment name key).
DOI: 10.5061/dryad.8c4196f/2
title: Lesser snow gosling diet contents collected in western Hudson Bay

description: Proventriculus contents from lesser snow goslings collected in representative coastal and inland habitat areas.
DOI: 10.5061/dryad.8vd0gf1/1
title: CDs DATA
DOI: 10.5061/dryad.bt010/1
title: Electronic supplementary information of this paper.

description: The file can be accessed by common softwares: OMNIC for FTIR, Excel for contact angle、MTT、tumor diameter and weight data.
DOI: 10.5061/dryad.d1m830t/2
title: Ezcurra and Butler Supplementary Data 1 Character list
DOI: 10.5061/dryad.d1m830t/3
title: Ezcurra and Butler Supplementary Data 2 Raw Matrix
DOI: 10.5061/dryad.d1m830t/4
title: Ezcurra and Butler Supplementary Data 3 Occurence and temporal data
DOI: 10.5061/dryad.d1m830t/5
title: Ezcurra and Butler Supplementary Data 4 Matrix for phenotypic rates
DOI: 10.5061/dryad.d1m830t/6
title: Ezcurra and Butler Supplementary Data 5 MPTs
DOI: 10.5061/dryad.d1m830t/7
title: Ezcurra and Butler Supplementary Data 6 Script to calculate phylogenetic diversity4
DOI: 10.5061/dryad.hr804/10
title: IV curve

description: IV curve of gas sensor
DOI: 10.5061/dryad.hr804/3
title: 75oC 4hrs14

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/4
title: 75oC 4hrs15

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/5
title: 75oC 4hrs16

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/6
title: 75oC 4hrs17

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/7
title: 75oC 4hrs18

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/8
title: 75oC 4hrs19

description: ZnO nanorods
DOI: 10.5061/dryad.hr804/9
title: 75oC 4hrs20

description: ZnO nanorods
DOI: 10.5061/dryad.m99v4/1
title: Data from: Next Generation Lineage Discovery: a Case Study of Tuberous Claytonia L.

description: Compressed zip file including Data, Scripts, Figures, Tables, and Supplemental Appendices
DOI: 10.5061/dryad.n976p/1
title: Magnoliids_alignment

description: 25 Magnoliid plastomes, with a single IR region removed, aligned using MAFFT and processed using Gblocks.
DOI: 10.5061/dryad.p2t0t00/1
title: Spider-prey interactions

description: Data on spider-prey interactions including metadata and brief description of the methods.
DOI: 10.5061/dryad.p82f2/1
title: annotation_introgressed_genes

description: Annotation of candidate genes for adaptive introgression across the whole genome of P. trichocarpa (balsa in tricho) and P. balsamifera (tricho in balsa) based on local ancestry analysis in RASPberry. Gene annotation was retrived using Popgenie (Sjödin et al. 2009)
DOI: 10.17632/fzhw52y3zm.1
title: Data for: Secondary Users Selection and Sparse Narrow-band Interference Mitigation in Cognitive Radio Networks

description: Spectrum scarcity is a critical problem that may reduce the effectiveness of wireless technologies and services. To address this problem, different spectrum management techniques have been proposed such as overlay cognitive radio (CR) where the unlicensed users can share the same spectrum with the licensed users. The main challenges in overlay CR networks are the identification and detection of the Primary User (PU) signals in a multi-source narrow-band interference (NBI) scenario. Therefore, in this paper, we investigate the performance of an orthogonal frequency division multiplexing (OFDM) overlay CR network with Secondary Users (SUs) and subcarriers selection schemes. Three approaches for SUs and subcarriers Selection named Direct, Distributed and Incremental selection techniques are proposed in this paper to increase the expected signal to interference and noise ratio based on full or partial knowledge of the channel state information (CSI). We also show that Distributed selection techniques provide all the SUs equal chances to be selected without affecting the selection diversity gain. General as well as simplified outage probability expressions are derived and extensive simulations are conducted to evaluate the performance of the proposed techniques and support the theoretical derivations. To accommodate more SUs, a new approach for asynchronous NBI estimation and mitigation in CR networks is investigated. Without any prior knowledge of the NBI characteristics and based on sparse signal recovery theory, the proposed approach allows the PU to exploit the sparsity of the SUs interference to recover it and approach the interference-free limit over practical ranges of NBI power levels.
DOI: 10.5061/dryad.11g3s9t/1
title: Individual counts eagle owls, water voles and white-tailed eagles during continuous midsummer daylight

description: Counts of eagle owls, water voles and white-tailed eagles collected non-invasively during continuous midsummer daylight near the Arctic Circle, at the Sleneset archipelago (66°21ʹN, 12°35ʹE) in coastal northern
Norway.
DOI: 10.5061/dryad.221mq23/2
title: ASI manual

description: PDF file containing the manual on how to use ASI software
DOI: 10.5061/dryad.221mq23/3
title: online_example_audio

description: Zip folder containing the 100 audio files used to illustrate the use of ASI software, as described in the manual.
DOI: 10.5061/dryad.221mq23/4
title: online_example_outputs

description: Zip folder containing all output files generated by ASI for online example, as described in the manual.
DOI: 10.5061/dryad.3d154/1
title: Diets of high arctic spiders

description: Diets of spider in herbivore-manipulations (Control and exclosure) as resolved by molecular tools.
DOI: 10.5061/dryad.42n44/10
title: 100%susceptible_control_run1

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: all 100% susceptible controls of run 1.
DOI: 10.5061/dryad.42n44/11
title: 100%susceptible_control_run2

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: all 100% susceptible controls of run 2.
DOI: 10.5061/dryad.42n44/12
title: 100%susceptible_control_run3

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: all 100% susceptible controls of run 3.
DOI: 10.5061/dryad.42n44/2
title: 20%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 20% susceptible, 80% resistant cells.
DOI: 10.5061/dryad.42n44/4
title: 40%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 40% susceptible, 60% resistant cells.
DOI: 10.5061/dryad.42n44/5
title: 50%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 50% susceptible, 50% resistant cells.
DOI: 10.5061/dryad.42n44/6
title: 60%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 60% susceptible, 40% resistant cells.
DOI: 10.5061/dryad.42n44/7
title: 70%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 70% susceptible, 30% resistant cells.
DOI: 10.5061/dryad.42n44/8
title: 80%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 80% susceptible, 20% resistant cells.
DOI: 10.5061/dryad.42n44/9
title: 90%susceptible

description: Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 90% susceptible, 10% resistant cells.
DOI: 10.5061/dryad.445742d/1
title: Daane et al native grasses leafhopper data sets

description: Each study is provided as a separate worksheet in the excel file
DOI: 10.5061/dryad.4s8b6q5/1
title: Sequence data and phylogenetic trees

description: This file contains the DNA sequence data analyzed plus the inferred phylogenetic trees.  It also contains a matrix of habitat data, as well as a tree showing (if opened in Mesquite) the habitat data mapped onto the phylogeny.  It is in NEXUS format.
DOI: 10.5061/dryad.558pt7j/1
title: Trait means and environmental data for the 33 species

description: Desiccation hardening (HRR and HC 3.5) for all 33 species. Environmental data averaged across the entire range of each species.
DOI: 10.5061/dryad.6675p/1
title: data_able-bodied

description: Data for able-bodied participants
DOI: 10.5061/dryad.8985578/1
title: Mycorrhizae alter herbivore sequestration and performance

description: The file Data-HerbivoreSeqandPerformance.zip holds three compressed data files, which contain the raw data used in our publication "Mycorrhizae alter toxin sequestration and performance of two specialist herbivores".  "Aphids.xlsx" contains all aphid sequestration and performance data. "Caterpillars.xlsx" contains all caterpillar sequestration and performance data. "Controlplants.xlsx" contains all control plant data. Missing values are denoted with a period (.). Please see the README file for more detail about the individual data files.
DOI: 10.5061/dryad.97q0th1/1
title: Toxicity and colour data for all samples, UVS visual system

description: This data file contains the toxicity (cyanogenic glucoside concentrations) and colour measurements (from cone catch data to luminance, saturation and hue values) for all samples. Colour measurements are based on the UVS 
(blue tit) visual system.
DOI: 10.5061/dryad.97q0th1/2
title: Toxicity and colour data for all samples, VS visual system

description: This data file contains the colour and toxicity measurements for all samples, with the colour measurements based on the VS (peafowl) visual system.
DOI: 10.5061/dryad.97q0th1/3
title: Contrast (JNDs) between moth red forewing areas and natural backgrounds

description: This file contains the chromatic and luminance just noticeable differences (JNDs) calculated between the colours of the moths' red forewings and three plant types (Lotus corniculatus [Lc] leaves, Lotus corniculatus flowers and Knautia arvensis [Ka] flowers), for both the UVS and VS visual systems.
DOI: 10.5061/dryad.c1d1f8h/1
title: Amazonia Lineages_Plasmodium

description: Lineages used in phylogeny reconstruction for Plasmodium.
DOI: 10.5061/dryad.c1d1f8h/2
title: Amazonia Lineages_Parahaemoproteus

description: Lineages used in phylogeny reconstruction for Parahaemoproteus.
DOI: 10.5061/dryad.c3sg55p/1
title: Heteroxynema cucullatum DNA sequence alignments and phylogenies

description: H_cucullatum_3loci_concatenated_MrBayes.tre: MrBayes tree of Heteroxynema cucullatum concatenated loci COI, ITS+, 28S
H_cucullatum_3loci_starbeast.tre: Starbeast species tree of Heteroxynema cucullatum loci COI, ITS+, 28S
H_cucullatum_COI_quadrivittatus_hosts_MrBayes.tre: MrBayes gene tree of COI for Heteroxynema cucullatum individuals that corespond to quadrivittatus group hosts (used in tanglegram)
H_cucullatum_COI_T_minimus_hosts_MrBayes.tre: MrBayes gene tree of COI for Heteroxynema cucullatum individuals that corespond to Tamias minimus hosts (used in tanglegram)
Heteroxynema_cucullatum_28S_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum 28S
Heteroxynema_cucullatum_28S_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum 28S
Heteroxynema_cucullatum_COI_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum COI
Heteroxynema_cucullatum_COI_RAxML.tre: RAxML gene tree of Heteroxynema cucullatum COI
Heteroxynema_cucullatum_COI_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum COI
Heteroxynema_cucullatum_ITS_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum ITS+
Heteroxynema_cucullatum_ITS_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum ITS+
DOI: 10.5061/dryad.f1782h7/1
title: Full Mexican Chile Pepper Collection Genotype Table

description: Genotype table in variant call format for all 32,623 SNPs identified in the Mexican chile pepper collection of this study. Includes genotypes from both plants in each population.
DOI: 10.5061/dryad.f1782h7/2
title: Genotype table for entire chile pepper collection

description: Genotype table for entire chile pepper collection, in variant call format. Includes one individual per each accession, and only SNPs of sufficient quality, for comparison between the chile pepper collection from Mexico and the global collection.
DOI: 10.5061/dryad.hr804/11
title: Sensitivity -2V

description: Sensitivity of gas sensor operated at -2V
DOI: 10.5061/dryad.hr804/12
title: Sensitivity -4V

description: Sensitivity of gas sensor operated at -4V
DOI: 10.5061/dryad.hr804/13
title: Sensitivity -6V

description: Sensitivity of gas sensor operated at -6V
DOI: 10.5061/dryad.j14316c/2
title: File_SIA_Condor

description: Isotopic values of historical and modern Andean condors and their main trophic resources collected in the Patagonian area
DOI: 10.5061/dryad.jk5h463/1
title: earthworm data

description: Sampling site and date, body size, maturity, COI haplotype, DNA-based (PTP model-based) species, mitochondrial clade, and BLAST result for megascolecid earthworm.
DOI: 10.5061/dryad.jk5h463/2
title: mating experiment data

description: Population (sites S, A, I, and K) and species (C. japonics: j, C. dehaanii: d), achievement of mating behaviour (mate recognition, mounting, insertion of the aedeagus, and ejaculation), and body length difference of male and female used in mating experiment.
DOI: 10.5061/dryad.jk5h463/3
title: predation experiment data

description: Species, population (Sites S, A, I, and K), instar, and body weight (g) of larva, community (Site S and K) and body weight (g) of earthworm, body weight ratio of earthworm to larva, and pradation success (success: 1, failure: 0).
DOI: 10.5061/dryad.jk5h463/4
title: relationship between larval and adult body size

description: Mother body length (mm) and mean initial body weights of first, second, and third larvae (g) of Carabus japonicus. The data were obtained from a common garden experiment using families derived from sites S, A, I, and K (SS, AA, II, and KK, respectively) (Okuzaki et al. 2015).
DOI: 10.5061/dryad.m4p474d/1
title: Radiant Heat Experiment Results
DOI: 10.5061/dryad.m4p474d/2
title: Substrate Heating Experiment Results
DOI: 10.5061/dryad.m4p474d/3
title: Caterpillar Metabolic Rate Measurements
DOI: 10.5061/dryad.mk59gk0/1
title: CHINN.et.al_SeaOtter_Dryad

description: These are original data from Chinn et al. 2018. This .csv file has data for measured concentrations of Total Antioxidant, Cortisol, Corticosterone, IgM, IgG, Total T4, Total T3, Reverse T3 analytes measured in northern and southern sea otters from California, Washington, and Alaska, USA.
DOI: 10.5061/dryad.mr766hr/1
title: Harrison et al Winners & Losers Supplementary Dataset
DOI: 10.5061/dryad.mr766hr/2
title: Winners & Losers R code_MLH (correlations)
DOI: 10.5061/dryad.n3q5t28/2
title: Ovarian fluid/sperm velocity datset (Cardozo & Pilastro BL)

description: Dataset used in the analyses, including sperm velocity (VAP, VCL), number of sperm analysed, analysis order and female body size (SL)
DOI: 10.5061/dryad.n976p/2
title: Asaroideae_alignment

description: Asaroideae plastomes, with a single IR region removed, aligned using MAFFT and processed using Gblocks.
DOI: 10.5061/dryad.n976p/3
title: trnH_alignment

description: trnH(GUG) from plastomes and mitochondrial genomes throughout the Piperales aligned using MAFFT and processed using Gblocks.
DOI: 10.5061/dryad.p82f2/2
title: TajimasD_wg_Pt_Pb

description: Tajima’s D values across all the introgressed regions for the 50 pure species individuals (P. trichocarpa and P. balsamifera), using 20-kb windows. Tajimas' D in P. balsamifera quantile 0.05 =-1.35871; 0.95 = 1.49239.  Tajimas' D in P. trichocarpa quantile 0.05 =-1.22174; 0.95 = 1.29456
DOI: 10.5061/dryad.s92710p/1
title: Nutrient resorption data in French forest sites

description: The file includes nutrient resorption, soil, climate and plant data from 102 French forest sites.
DOI: 10.5061/dryad.sc1tm24/1
title: GBS reads lane 1

description: This is 1 of 4 lanes sequenced on an Illumina NextSeq for this project. All sequencing details can be found in the published manuscript. The four lanes of sequencing data are accompanied by a two files: 1. barcodes and adapters 2. metadata
DOI: 10.5061/dryad.sc1tm24/5
title: Barcodes and adapters
DOI: 10.5061/dryad.t7s3cr8/1
title: Holmes and Matlack herb abundance by site

description: Abundance of forest herb species in each of 40 chronosequence sites.
DOI: 10.5061/dryad.t7s3cr8/2
title: Holmes and Matlack herb presence absence

description: Presence date for all forest herb species observed in each of 40 chronosequence sites. Used to calculate species richness in the associated article.
DOI: 10.5061/dryad.t7s3cr8/3
title: Holmes and Matlack environment by site

description: Environmental data averaged at the site scale used for analysis on environmental influence on plant community composition.
DOI: 10.5061/dryad.tt6h5h1/1
title: GeorefCropNutrientResponseFunctions for Tropical Africa