cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zwck97zw4k
title: cnf1+pks in ApcMin/+ mice

description: Colorectal cancer (CRC) patients are frequently colonized by colibactin-producing Escherichia coli (CoPEC) (>40%), which enhances tumorigenesis in mouse models of CRC. We observed that 50% of CoPEC also contains the cnf1 gene, which encodes cytotoxic necrotizing factor-1 (CNF1), an enhancer of the eukaryotic cell cycle. 
The study "Cytotoxic necrotizing factor 1 hinders colon tumorigenesis induced by colibactin-producing Escherichia coli in ApcMin/+ mice" provides evidence that CNF1 decreases the carcinogenic effects of CoPEC in ApcMin/+ mice by decreasing CoPEC-induced cellular senescence and inflammation.
Raw data from mice and  cells culture used in the study. Raw patient data used in the study were obtained from previous studies of laboratory. Data specifically used are provided.
DOI: 10.6084/m9.figshare.14169824.v1
title: Supplementary Material for: Screening Status as a Determinant of Choice of Colorectal Cancer Screening Method: A Population-Based Informed Survey

description: <b><i>Objectives:</i></b> Fecal blood testing is a noninvasive alternative to colonoscopy for colorectal cancer (CRC) screening and is preferred by a substantial proportion of individuals. However, participant-related determinants of the choice of screening method, particularly up-to-date screening status, remain less studied. We aimed to determine if up-to-date screening status was related to choosing a fecal blood test over colonoscopy. <b><i>Setting:</i></b> Participants in the population-based cross-sectional survey study Bus Santé in Geneva, Switzerland – aged 50–69 years. <b><i>Design:</i></b> Cross-sectional survey study using mailed questionnaires inquiring about CRC screening method of choice after providing information on advantages and disadvantages of both screening methods. We used multivariable logistic regression models to determine the association between up-to-date CRC screening status and choosing fecal blood testing. <b><i>Key results:</i></b> We included 1,227 participants. Thirty-eight percent of participants did not have up-to-date CRC screening. Overall, colonoscopy (54.9%) was preferred to fecal blood testing (45.1%) (<i>p</i> &lt; 0.001) as screening method of choice. However, screening method choices differed between those with (65.6% colonoscopy and 34.4% fecal blood testing) and without up-to-date CRC screening (36.5% colonoscopy and 63.5% fecal blood testing). Not having up-to-date CRC screening was associated with a higher probability of choosing fecal blood testing as screening method (odds ratio = 2.6 [1.9; 3.7], <i>p</i> &lt; 0.001) after adjustment for the aforementioned confounders. <b><i>Conclusions:</i></b> Not having up-to-date screening was independently associated with fecal blood testing as the preferred method for CRC screening. Proposing this method to this subpopulation, in a context of shared decision, could potentially increase screening uptake in settings where it is already high.
DOI: 10.6084/m9.figshare.28204688.v1
title: Processed data for Figure 2 and 3

description: 90 <i>E.coli </i>TFs encompassing regulation of several key cellular functions were profiled on synthetic circuits to isolate the fundamental response function. Each regulator was assayed at 3 binding locations: immediately downstream (+1) relative to the promoter, a proximal promoter position(−57) associated with activation, and a distal position (−103).
DOI: 10.6084/m9.figshare.28953380.v1
title: Understanding Users’ Online Health Information Seeking Switching Intention: From Traditional Health Information Platforms to GAI

description: Questionnaire Dataset, fsQCA analytical scripts and parameters
DOI: 10.6084/m9.figshare.3491411.v1
title: French and English Version of the Reality-Unknown Nonverbal False Belief Task

description: The material provided here consists of ONE of TWO tasks that need to be jointly administrated (see Figshare collection to download the other complementing task). <br>Please note that the “reality-unknown” task has to be presented BEFORE the “reality-known” task in order to provide reliable diagnostic information. The task is presented in the following article:<br>Biervoye, A., Meert, G., Apperly, I.A., & Samson, D. (under review). Assessing the integrity of the cognitive processes involved in belief reasoning by means of two nonverbal tasks: rationale, normalization and illustration with brain-damaged patients.<br>The video files are the same for the French and English versions of the task only the scoring sheet and powerpoint files differ across the French and English version.<br>Please read carefully the README file.
DOI: 10.6084/m9.figshare.24514618.v1
title: <b>Progress Report 2020: Implementing the Street Vendors Act</b>

description: Centre for Civil Society's report for 2019-20 provides a comprehensive analysis of the implementation of the Street Vendors Act across India, drawing on data from the DAY-NULM's Management Information System. The report is divided into three critical sections:<b>State and ULB Progress:</b> It ranks and scores the performance of 28 states and their ULBs, showcasing a spectrum of implementation efficacy, with Andhra Pradesh leading by example in all key areas, while several other states lag significantly behind.<b>Cross-State Legislative Comparison:</b> Through maps and tabulations, the report compares the rules and schemes notified under the Act across states, revealing a diverse range of approaches and highlighting inconsistencies with the Act's mandates.<b>Analysis of Rules and Schemes:</b> The report scrutinizes the rules and schemes of 35 states and union territories, identifying departures from the Act and potential administrative overreach.Key findings indicate mixed progress, with some states showing substantial advancement, while others remain stagnant. The report notes that while some ULBs exemplify best practices, most display significant deviations in their implementation processes. Additionally, the report points out that in many cases, the notified rules and schemes either exceed the Act's intentions or lack clarity, leading to potential misapplication.By shedding light on the disparities in implementation and legislative alignment, the report serves as a valuable benchmark for state authorities to learn from each other and strive for a more uniform and effective application of the Street Vendors Act.
DOI: 10.6084/m9.figshare.25466794.v2
title: Data file and result table

description: Ishikawa cells were were treated with 2% v/v FBS exosome-free MEM containing 100µM phosphatidylcholine liposomes (PC), phosphatidylethanolamine liposomes (PE) or PBS (ctrl). Following 72h, cells were collected in RIPA-buffer using a scraper, vortexed for 5 min, and centrifuged at 12,000 g for 30 min at 4°C. The supernatant was stored at -80°C.
DOI: 10.6084/m9.figshare.28424708.v1
title: Comments

description: Collective Memory-Making of the January Insurrections in Brazil and the United States on YouTube
DOI: 10.6084/m9.figshare.7268513.v1
title: Perception regarding Drought and Health in the Brazilian Semiarid Region SAB2

description: This data was developed by a field study about drought and its impacts on health in the Semiarid region of Brazil. It have been organised by the Brazilian Observatory of Climate and Health from the Oswaldo Cruz Foundation, Brazil.
DOI: 10.17632/ccr8cwphpm
title: soil prediction

description: This script predicts soil thickness using both environmental features
and graph-based features extracted from two types of graphs:
(1) a geographic similarity graph based on spatial proximity,
and (2) a feature similarity graph based on high-correlation environmental variables.
DOI: 10.17632/dhk6bsbmcp
title: Prime Factorization and Diophantine Quintic Equations Insights, Challenges, and New Directions

description: When discussing the Diophantine quintic equation $p(a^5 + b^5) = q(c^5 + d^5)$
 where p is a prime and q is an integer, there is a clear gap between the mathematical literature and online forums. Because of the intrinsic complexity of parameterizing fifth-degree equations, this equation re-
mains largely unexplored. In this work, we approach this quintic problem
through algebraic methods with the goal of providing numerical solutions that illuminate its properties and behaviors.Our research uncovers in-
triguing patterns and connections that shed light on the enigmatic nature
of Diophantine quintic equations in this particular form.
DOI: 10.6084/m9.figshare.3362899.v1
title: Genome trees and alignment fasta amino acid files

description: Placement of microbial draft genomes recovered from the Red Sea into archaeal and bacterial genome trees inferred from concatenation of 122 and 120 proteins, respectively.
DOI: 10.17632/6wr5f87gvk
title: sulfur XANES and geochemical data

description: this dataset included geochemical data from PBr and BBM peat profiles, as well as sulfur K-edge XANES data from selective peat samples, sulfur K-edge XANES data of standard also presented
DOI: 10.17632/fr49pwc5xw
title: supplementary data

description: Supplementary S1: ages of raised marine deposits from marine terrace and calculated uplift rates in the Coastal Range. Elevation of paleosea-level estimates from the literature (Supplementary S2). Supplementary S2: Eustatic sea-level curve for the past 20 ka from Bard et al. (1990), Bird et al. (2007), Chappell and Polach (1991), Geyh et al. (1979), Hanebuth et al. (2000), and Peltier and Fairbanks (2006).
DOI: 10.17632/y3zww2js5z
title: Data for "The Macroeconomic Effects of Government Spending Shocks in New Zealand"

description: This dataset contains all data that are needed to produce the results in the paper "The Macroeconomic Effects of Government Spending Shocks in New Zealand".
DOI: 10.6084/m9.figshare.29043221.v1
title: crown-model-data-and-code

description: Code and data for a multi-species crown width model for subtropical natural forests；This dataset and the accompanying R scripts support the analyses in the manuscript. The study was conducted in Damingshan, Guangxi, and includes data on 1,802 trees, covering tree height, crown width, competition indices, species functional traits, and environmental factors. The provided code includes the main scripts used for crown width modeling in the study.
DOI: 10.6084/m9.figshare.29082530.v1
title: <b>Supplementary Table S1.docx</b>

description: <b>Supplementary Table S1</b>. One-tube step of master mix reaction for simplex LAMP assays. This table shows how to prepare the reaction mix by combining volumes of reagents and plant sap for performing LAMP tests.
DOI: 10.6084/m9.figshare.5129701.v1
title: Supplementary Material for: New Developments in Mechanical Enhancement of Colonoscopy: Cuffs, Caps and Rings

description: <b><i>Background:</i></b> Colorectal cancer (CRC) is a common cause of cancer-related deaths. Early detection of precursor lesions in the adenoma-carcinoma sequence via colonoscopy can decrease mortality from CRC. <b><i>Summary:</i></b> In this review article, we have summarized retrospective studies, prospective single center, multicenter studies and randomized controlled trials describing the efficacy of endocuff colonoscopy (EC), cap-assisted colonoscopy (CAC) and endorings colonoscopy (ERC). Indications, techniques, outcomes, limitations and complications reported are discussed. <b><i>Key Message:</i></b> Use of colonoscope with cap, cuff or rings attached to its distal tip has been shown to increase the polyp detection rate and adenoma detection rate, predominantly for the small polyps (&lt;1 cm) and proximal colon location. Evidence is uniform for EC and ERC but not for CAC. Benefits of shorter cecum intubation time, improved cecum intubation rates and decreased pain scores during colonoscopy done with assistance of cuff or cap has potential to decrease the number of incomplete colonoscopy and increase overall patient satisfaction, thus improving follow-up. In the absence of any additional adverse events, EC, CAC and ERC have potential to enhance the benefits of colonoscopy.
DOI: 10.17632/dj95jh332j
title: AR-ASAG-Dataset

description: The ARabic Dataset for Automatic Short Answer Grading Evaluation V1. ISLRN 529-005-230-448-6. Our dataset consists of reported evaluations relate to answers submitted for three different exams submitted to three classes of students. The exams were conducted under natural conditions of evaluation. Each test consists of 16 short answer questions (a total of 48 questions). For each question, a model answer is proposed. Students submitted answers to these questions. The number of answers obtained is different from one question to another. The dataset includes a total of 2133 pairs (Model Answer, student answer). the Dataset encompasses 5 types of questions: • "عرف ": Define? • "إشرح": Explain? • "ما النتائج المترتبة على": What consequences? • "علل": Justify? • "ما الفرق": What is the difference AR-ASAG Dataset is available in different versions: TXT, XML, XML-MOODLE and Database (.DB). The .DB format allows making the necessary exports according to specific analysis needs. The XML-MOODLE format is used on Moodle e-learning Platforms For each pair, two grades (Mark1 and Mark2 ) are associated with a manual Average Gold Score Both manual grades are available in the dataset. Inter-Annotators Agreement: - (Pearson Correlation: r=0.8384) - (Root Mean Square Error : RMSE=0.8381). The Dataset can be also used for essay scoring as the students's answers responses take to reach 4-5 sentences. The Dataset exist in TXT, XML, XML-MOODLE Versions The name of the file is representative of its content. We use the term "Mark" to specify "Grade" For privacy reasons, no student identifiers are used in this Dataset.
DOI: 10.17632/zgffzf3dg8
title: Data for manuscript "A comprehensive efficiency assessment of Vietnamese banks: Based on the two-stage SBM-DEA model with undesirable outputs"

description: This data for paper named "A comprehensive efficiency assessment of Vietnamese banks: Based on the two-stage SBM-DEA model with undesirable outputs"
DOI: 10.6084/m9.figshare.12268970.v1
title: Sensitivity and regression analysis of acoustic parameters for determining physical properties of frozen fine sand with ultrasonic test

description: (1) Three-factor analysis of variance (ANOVA) Orthogonal tests are an effective means of multi-factor analysis and lend themselves to assessing the impact of relevant factors (Li Y.<i> et al.</i>, 2010; Liu Y.Q. et al., 2016). An orthogonal experiment consisting of nine groups—L<sub>9</sub>(3<sup>4</sup>)—selected three physical properties of frozen fine sand (temperature, density and water content) as factors to study the sensitivity of three acoustic parameters (wave velocity, attenuation coefficient and dominant frequency) to the physical properties. The values of the factors used for the orthogonal test are given in Table 2 (2) Control variable test As shown in Table 3, the control variable test included two types of experiment. One had 16 groups of different levels of water content (4.31, 7.31, 10.31 and 13.31%) at a single level of density (1.87g/cm<sup>3</sup>) to study the relationships between sensitive acoustic parameters and physical properties (water content and temperature). The other had 16 groups of different levels of density (1.87, 1.8, 1.76 and 1.73g/cm<sup>3</sup>) under a single level of water content (7.31%) to study the relationships between sensitive acoustic parameters and density. Each group was evaluated at four levels of temperature (–5, –10, –15 and –20°C), and the results are mean values of two repeated tests.
DOI: 10.6084/m9.figshare.14597556.v4
title: Radical stability and redox potential calculations for 89,320 organic radicals in the water phase

description: Optimized structures for 89,320 organic radicals at the M06-2X/def2-TZVP level of theory in an implicit water solvent using Gaussian 16. Cartesian coordinates of the optimized molecules are included in the SDF file format. Fractional spin of the unpaired electron and buried volumes has been provided in a CSV file for the water-phase calculations of the computationally optimized molecules. In the spin and buried volume CSV, atom_index corresponds to the canonical atom order assigned by RDKit and is also represented by the atom ordering for the corresponding entry in the SDF file. The redox potential database contains the redox potentials (in V relative to SHE) calculated with Guassian 16c at the M06-2x/def2-tzvp level of theory in an implicit water solvent by finding the enthalpy of both the positive and negatively charged states for each radical.<br>In addition to the database of radicals derived from PubChem molecules, we also include 1078 radicals generated by an RL algorithm for potential application in redox flow batteries. In the rl candidates CSV, we include enthalpy and 3D coordinates for the oxidized, radical, and reduced forms of each species (where converged). We also include raw Gaussian 16 output logs for each calculation in rl_logfiles.tar.gz, where the filenames are referenced in the rl candidates CSV.<br>
DOI: 10.6084/m9.figshare.16586951.v1
title: Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis

description: The abundance and diversity of host-associated <i>Prevotella</i> species have a profound impact on human health. To investigate the composition, diversity, and functional roles of <i>Prevotella</i> in human gut, a population-wide analysis was carried out on 586 healthy samples from western and non-western populations including the largest Indian cohort comprising of 200 samples, and 189 Inflammatory Bowel Disease samples from western populations. A higher abundance and diversity of <i>Prevotella copri</i> species enriched in complex plant polysaccharides metabolizing enzymes, particularly pullulanase containing polysaccharide-utilization-loci (PUL), were found in Indian and non-western populations. A higher diversity of oral inflammations-associated <i>Prevotella</i> species and an enrichment of virulence factors and antibiotic resistance genes in the gut microbiome of western populations speculates an existence of a mouth-gut axis. The study revealed the landscape of <i>Prevotella</i> composition in the human gut microbiome and its impact on health in western and non-western populations.
DOI: 10.6084/m9.figshare.19187465.v1
title: Pest file

description: These are the input files for the Pest software. Case 1 corresponds to case where only one observation point is included in the calibration dataset. Case 2 corresponds to case where one observation point is omitted from complete calibration dataset. Each case file contains two template files (flow.tpl and trans.tpl), an instruction file (instruction.ins) and a control file (control file.pst). In control file.pst, a set of concentration data needs to be manually added/deleted in section observation data for case 1/2. These dataset are obtained from Modflow 6 simulation results.<br>
DOI: 10.6084/m9.figshare.21215129.v1
title: Species origins from Yap et al.

description: Species origins as assigned by Yap et al. J. Biogeography 2018.
DOI: 10.6084/m9.figshare.4725664.v1
title: The Freenet social trust graph extracted from the Web of Trust

description: The dataset trust-deduplicated.csv shows the trusts-value given by anonymous users of the censorship resistant Freenet network to other users. IDs are anonymized by mapping each ID to an integer-index in a non-shared list of known IDs. The format is trust-giver;trust-receiver;trust-value.<br><br>The dataset trust-sone.csv only includes trust relationships which fit the trust-allocation style in the Sone social networking plugin (either 75 for non-spammers or -25 for disruptive behaviour).<br><br>The *.scm files were used to crawl the data from a locally running Freenet node (see https://freenetproject.org ).<br>trust-deduplicated-force-atlas-hub-centrality.png and trust-sone-reingold.png provide first looks into the data visualized with the free tool Gephi.Additional details are available at http://www.draketo.de/english/freenet/social-graph-snapshot<br>
DOI: 10.17632/8pn3rps3tr
title: TradeNetwork_SOE

description: Here are the codes to reproduce the results in `International Production Networks and the Propagation of Financial Shocks'
DOI: 10.6084/m9.figshare.23295044.v4
title: Soil tests

description: Fourteen soil samples, labeled as A to N, have undergone evaporation tests, and the parameters obtained from the optimized inversion of all parameterization schemes are summarized in each file “total_para-X-sample.mat”, and X means the label of soil sample. The mat file is a standard-format of Matlab software, which can be directly loaded using the "load" command. Please refer to the "Data-format-readme.xlsx" file for the parameters corresponding to data in “total_para-X-sample.mat” file.
DOI: 10.17632/hbn8k4m6r7
title: Crack length data of the circular specimens under torsional cyclic loads with outer initial precrack

description: The response of the materials under the action of cyclic loads is always a topic of interest of the engineers and researchers. In this dataset is showed the results for the torsional fatigue test of the cylindrical cross section specimens. A longitudinal crack was induced in the outter diameter. The specimen material is AISI 1015 steel. Fatigue test was realized in the torsional testing machine described in the literature. The asymmetry ratio used was -1. It is showed the crack size ai respect to the number of cycles Ni and pictures of the cross section after the failure.
DOI: 10.17632/z66d87gd23
title: Bangladeshi Tribal Faces: A Dataset for Machine Learning and Deep Learning Applications

description: Title:
Facial Attributes Dataset of Bangladeshi Tribes for Ethnic Classification Research 

Description: 
This dataset comprises facial attribute data collected from individuals belonging to two indigenous tribal communities in Bangladesh GARO and CHAKMA. It aims to facilitate research in ethnicity classification using machine learning (ML) and deep learning (DL) techniques. The dataset is presented in CSV format and includes detailed facial attribute annotations to support diverse AI-driven tasks, including classification, clustering, and recognition. 

Key Features:
1. Data Content: Facial attribute information (For example: skin tone, facial shape, eye features, etc.) encoded numerically and categorically for ML and DL applications. 
2. Ethnic Diversity: Includes samples from multiple Bangladeshi tribal groups to ensure ethnic diversity and representation. 
3. Purpose: Designed for applications in ethnicity classification, social anthropology research, and AI ethics. 
Format: CSV file (.csv)
DOI: 10.6084/m9.figshare.22317217.v1
title: MRI data of an <i>Octopus rubescens</i> arm

description: Contains the raw MRI data of an <em>Octopus rubescens </em> arm as described in the paper "Topology, dynamics, and control of an octopus-analog soft arm." 
<br>
Data was acquired on a 9.4T Brucker MRI. The zip files are the data provided by the scanner in Brucker's proprietary 2dseq format. Data is also provided converted to a DICOM format. 
<br>
Three data sets are provided. Two data sets are T2-weighted images of the arm's cross-section and longitudinal plane. The third data set is the DTI data used to generate tractography data. DTI data was processed using DSI Studio which can interface with the original 2dseq data format. DSI Studio is freely available and can be downloaded at https://dsi-studio.labsolver.org/
<br>
DOI: 10.6084/m9.figshare.7763648.v1
title: HitPredict interactions - version 04Feb2019

description: Protein-protein interactions from IntAct, BioGRID, HPRD, MINT and DIP are combined, annotated and scored. The reliability score is calculated based on the experimental details of each interaction and the sequence, structure and functional annotations of the interacting proteins.<br> <br>HitPredict update (04Feb2019) contains: 713127 experimentally identified physical protein-protein interactions82152 proteins 119 species