cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15394357
title: CoBRA-CYL-QR: Dataset of QR Codes on Cylindrical Surfaces

description: Dataset summary

The CoBRA-CYL-QR dataset includes 5775 images of QR Codes with various number of alignment patterns (1, 6, 13) on cylindrical surfaces with annotated ground truth. They are all generated with the CoBRA dataset synthesis system which is based on 3D rendering technology.

File naming pattern

There are two folders in the root directory of the dataset: images and markup. Each image in the images folder is named using the following pattern: aa_bb_cccc_ddddd.png, where aa is the number of alignment patterns in QR Code, bb is the index of used model & texture pair, cccc is the index of camera location on the predefined grid of view points, and ddddd is a unique hash of the image in the entire dataset. The corresponding ground truth for each image is stored under the same file name with the appended .json file extension in the markup folder.

Annotation format

Each JSON ground truth file contains one JSON object that provides information for the single QR Code located in the image: - barcode symbology (key symbology), always equal to QR_CODE;- barcode dimensions in the number of modules (keys dim1 and dim2);- barcode message (key value) in Base64 encoding;- barcode quadrangle (key quad);- barcode grid of modules (key grid);- barcode curvature value (key curvature);- contours of the three Finder Patterns of QR Code (key finder_patterns);- central modules of the three Finder Patterns of QR Code (key finder_patterns_centers);- contours of the Alignment Patterns of QR Code (key alignment_patterns);- central modules of the Alignment Patterns of QR Code (key alignment_patterns_centers);

The vertices of the QR Code quadrangle (quad) are indexed starting from the upper left corner of the code spiraling clockwise.The QR Code grid is stored as a list of module corners which is ordered by rows of QR Code starting from the upper left corner of a QR Code and lasting with its lower right one.Finder Patterns and Alignment Patterns of QR Code are stored in ordered lists under the keys finder_patterns, finder_patterns_centers, alignment_patterns, alignment_patterns_centers where each element is itself an ordered list of points of a pattern. Finder Patterns are stored in the following order: upper left, upper right, lower left.Alignment Patterns are ordered like points in the grid: from the upper left pattern down to the lower right one.Their points (of contours and central modules) are indexed starting from the upper left corner of a pattern spiraling clockwise (like in quad).
DOI: 10.15468/dd.ss27mc
title: Distribution records of Lampichthys procerus

description: These records of Lampichthys procerus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.66gjpb
title: Distribution records of Lampanyctus intricarius

description: These records of Lampanyctus intricarius were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.mmkxaa
title: Distribution records of Ceratoscopelus warmingii

description: These records of Ceratoscopelus warmingii were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.b77rd6
title: Distribution records of Taaningichthys bathyphilus

description: These records of Taaningichthys bathyphilus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.m52fsz
title: Distribution records of Diaphus ostenfeldi

description: These records of Diaphus ostenfeldi were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.kn6ttp
title: Distribution records of Notoscopelus resplendens

description: These records of Notoscopelus resplendens were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.ub5prh
title: Distribution records of Lampanyctus ater

description: These records of Lampanyctus ater were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.jxgdak
title: Distribution records of Electrona risso

description: These records of Electrona risso were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.qe68cz
title: Distribution records of Bolinichthys supralateralis

description: These records of Bolinichthys supralateralis were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.39umb8
title: Distribution records of Diaphus meadi

description: These records of Diaphus meadi were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.94x8qw
title: Distribution records of Diaphus mollis

description: These records of Diaphus mollis were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.f998sz
title: Distribution records of Hygophum reinhardtii

description: These records of Hygophum reinhardtii were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.p4gqxc
title: Distribution records of Hygophum hanseni

description: These records of Hygophum hanseni were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.6hx6xb
title: Distribution records of Lobianchia dofleini

description: These records of Lobianchia dofleini were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.r2yzrs
title: Distribution records of Myctophum phengodes

description: These records of Myctophum phengodes were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.q9v5sf
title: Distribution records of Scopelopsis multipunctatus

description: These records of Scopelopsis multipunctatus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.sd4ymt
title: Distribution records of Symbolophorus barnardi

description: These records of Symbolophorus barnardi were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.u847cs
title: Distribution records of Lampanyctus pusillus

description: These records of Lampanyctus pusillus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.6f97xa
title: Distribution records of Symbolophorus evermanni

description: These records of Symbolophorus evermanni were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.fpmjb7
title: Distribution records of Lampanyctus lepidolychnus

description: These records of Lampanyctus lepidolychnus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.u5a2yg
title: Distribution records of Lampanyctus tenuiformis

description: These records of Lampanyctus tenuiformis were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.276jaw
title: Distribution records of Lampanyctus alatus

description: These records of Lampanyctus alatus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.3p6jsr
title: Distribution records of Gonichthys barnesi

description: These records of Gonichthys barnesi were downloaded from GBIF on 2019-09-11.
DOI: 10.17632/b5dvfvwvt8.1
title: Chromatography Files of the Complete Mitochondrial Genome of Neochalcosia remota (Lepidoptera: Zygaenidae)

description: This dataset contains chromatography files from Sanger sequencing results fot the complete mitochondrial genome assembly of Neochalcosia remota (Lepidoptera: Zygaenidae).
DOI: 10.57760/sciencedb.24018
title: Data Set of the Study of Aloe Emodin in an Alzheimer’s Disease Rat Model Induced by Copper-Aβ
title: Data Set of the Study of Aloe Emodin in an Alzheimer’s Disease Rat Model Induced by Copper-Aβ

description: Statistical analysis in this study was performed using SPSS software (Version 20.0, IBM Corp., Armonk, USA), and GraphPad Prism software (Version 10, Dotmatics, Boston, USA) was used for visualization purposes.
description: Statistical analysis in this study was performed using SPSS software (Version 20.0, IBM Corp., Armonk, USA), and GraphPad Prism software (Version 10, Dotmatics, Boston, USA) was used for visualization purposes.
DOI: 10.15468/dl.9bexbv
title: Occurrence Download

description: A dataset containing 132081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ecological Baseline Studies of the U.S. Outer Continental Shelf Option Year 1"
 ]
}

 The dataset includes 132081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002278-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.24010
title: Development of an Evaluation Index System for Weight Management Clinic Service Quality in China
title: 中国体重门诊服务质量评价指标体系构建

description: Construct a preliminary draft of the evaluation index system for the quality of weight clinic services based on the Service Quality Gap Model. Use Delphi method to revise and finalize the initial draft. Finally, after using the Satty1-9 scaling method for scaling, the Analytic Hierarchy Process (AHP) is applied to determine the weights of the indicators. 
description: Construct a preliminary draft of the evaluation index system for the quality of weight clinic services based on the Service Quality Gap Model. Use Delphi method to revise and finalize the initial draft. Finally, after using the Satty1-9 scaling method for scaling, the Analytic Hierarchy Process (AHP) is applied to determine the weights of the indicators.
DOI: 10.17632/4szc6kxvgz
title: Crowdfunding

description: Crowdfunding scopus database
DOI: 10.17632/4szc6kxvgz.1
title: Crowdfunding

description: Crowdfunding scopus database
DOI: 10.57760/sciencedb.08543
title: SLOSS-1 Data Package of Simulating community assembly in the fragmental landscapes
title: SLOSS-1 Data Package of Simulating community assembly in the fragmental landscapes

description: Data Package. Using the MetaIBM library, we simulated the community assembly in the fragmental landscapes, by building an individual-based models. Thhis is the Part 5 of the datasets
description: Data Package. Using the MetaIBM library, we simulated the community assembly in the fragmental landscapes, by building an individual-based models. Thhis is the Part 5 of the datasets
DOI: 10.57760/sciencedb.20763
title: Chemostratigraphic data and compilation of nitrogen isotope data from the Ediacaran to early Cambrian
title: Chemostratigraphic data and compilation of nitrogen isotope data from the Ediacaran to early Cambrian

description: Nitrogen isotope data reported from South China in published papers are compiled,and geologic age estimates of nitrogen isotopes from Ediacaran to the early Cambrian period.
description: Nitrogen isotope data reported from South China in published papers are compiled,and geologic age estimates of nitrogen isotopes from Ediacaran to the early Cambrian period.
DOI: 10.57760/sciencedb.24012
title: Data for Aspect ratio on three-dimensional stability analysis of slurry-supported trenches in non-uniform and anisotropic clay
title: Data for Aspect ratio on three-dimensional stability analysis of slurry-supported trenches in non-uniform and anisotropic clay

description: Data for ressearch Aspect ratio on three-dimensional stability analysis of slurry-supported trenches in non-uniform and anisotropic clay
description: Data for ressearch Aspect ratio on three-dimensional stability analysis of slurry-supported trenches in non-uniform and anisotropic clay
DOI: 10.57760/sciencedb.24014
title: Transcriptome sequencing of rheumatoid arthritis patient-derived synovial fibroblasts with or without NRP2 knockdown
title: Transcriptome sequencing of rheumatoid arthritis patient-derived synovial fibroblasts with or without NRP2 knockdown

description: Synovial fibroblasts were isolated from synovial tissues of rheumatoid arthritis patients, passaged, and purified, and identified by flow cytometry. Cells from passages 3 to 8 were used for experiments. After transfection of siCon or siNRP2 via electroporation for 24 hours, the cells were stimulated with TNF for 2 or 20 hours, collected, and subjected to transcriptome sequencing. RNA-seq and data analysis were performed by Seqhealth Technology Co., Ltd. (Wuhan, China). Total RNA was extracted using TRIzol, and 2 μg was used to prepare stranded mRNA libraries with the KC-Digital™ Kit (Illumina-compatible) per manufacturer protocols. Raw data were quality-filtered (Trimmomatic v0.36) and adaptor-trimmed, followed by in-house deduplication to remove PCR/sequencing biases. Exon-mapped reads were quantified (featureCounts, Subread-1.5.1), RPKM-normalized, and analyzed for differential expression (edgeR v3.12.1; p&lt;0.05, |FC|≥2).
description: Synovial fibroblasts were isolated from synovial tissues of rheumatoid arthritis patients, passaged, and purified, and identified by flow cytometry. Cells from passages 3 to 8 were used for experiments. After transfection of siCon or siNRP2 via electroporation for 24 hours, the cells were stimulated with TNF for 2 or 20 hours, collected, and subjected to transcriptome sequencing. RNA-seq and data analysis were performed by Seqhealth Technology Co., Ltd. (Wuhan, China). Total RNA was extracted using TRIzol, and 2 μg was used to prepare stranded mRNA libraries with the KC-Digital™ Kit (Illumina-compatible) per manufacturer protocols. Raw data were quality-filtered (Trimmomatic v0.36) and adaptor-trimmed, followed by in-house deduplication to remove PCR/sequencing biases. Exon-mapped reads were quantified (featureCounts, Subread-1.5.1), RPKM-normalized, and analyzed for differential expression (edgeR v3.12.1; p&lt;0.05, |FC|≥2).
DOI: 10.57760/sciencedb.24038
title: ChIP-seq detection of transcription factor p65-enriched DNA fragments in rheumatoid arthritis patient-derived synovial fibroblasts
title: ChIP-seq detection of transcription factor p65-enriched DNA fragments in rheumatoid arthritis patient-derived synovial fibroblasts

description: Synovial fibroblasts were isolated from synovial tissues of rheumatoid arthritis patients, passaged, and purified, and identified by flow cytometry. Cells from passages 3 to 8 were used for experiments. Synovial fibroblasts were stimulated with TNF for 24 h. Synovial fibroblasts (1×10⁷) were PBS-washed, cross-linked in 1% formaldehyde (10 min, room temperature), and quenched with 0.125 M glycine (5 min). After centrifugation and PBS washes, cells were lysed in ice-cold buffer (0.5% NP-40, 10 mM HEPES pH 7.5, 0.1 mM EDTA, protease inhibitors) for 5 min. Nuclei were pelleted (2000×g, 10 min, 4°C), and chromatin was sonicated to 100-500 bp fragments. Sonicated chromatin was divided: 10% retained as "input," 80% immunoprecipitated with anti-p65 antibody (CST #8242), and 10% incubated with rabbit IgG (Abcam ab171870) as "IgG" control. IP complexes were sequentially washed, eluted, and de-crosslinked. DNA from input and IP fractions was phenol-chloroform-extracted, quantified (Qubit 3), and quality-checked by agarose gel electrophoresis (chromatin fragmentation) and Western blot (IP efficiency). Sequencing libraries were prepared using VAHTS Universal DNA Library Prep Kit (Vazyme ND607), size-selected (200-500 bp), and sequenced on an Illumina Novaseq X Plus (PE150 mode).
description: Synovial fibroblasts were isolated from synovial tissues of rheumatoid arthritis patients, passaged, and purified, and identified by flow cytometry. Cells from passages 3 to 8 were used for experiments. Synovial fibroblasts were stimulated with TNF for 24 h. Synovial fibroblasts (1×10⁷) were PBS-washed, cross-linked in 1% formaldehyde (10 min, room temperature), and quenched with 0.125 M glycine (5 min). After centrifugation and PBS washes, cells were lysed in ice-cold buffer (0.5% NP-40, 10 mM HEPES pH 7.5, 0.1 mM EDTA, protease inhibitors) for 5 min. Nuclei were pelleted (2000×g, 10 min, 4°C), and chromatin was sonicated to 100-500 bp fragments. Sonicated chromatin was divided: 10% retained as "input," 80% immunoprecipitated with anti-p65 antibody (CST #8242), and 10% incubated with rabbit IgG (Abcam ab171870) as "IgG" control. IP complexes were sequentially washed, eluted, and de-crosslinked. DNA from input and IP fractions was phenol-chloroform-extracted, quantified (Qubit 3), and quality-checked by agarose gel electrophoresis (chromatin fragmentation) and Western blot (IP efficiency). Sequencing libraries were prepared using VAHTS Universal DNA Library Prep Kit (Vazyme ND607), size-selected (200-500 bp), and sequenced on an Illumina Novaseq X Plus (PE150 mode).
DOI: 10.17632/gd7ygzg4m6.1
title: Investigation of polymers in solid state through DFT-based analysis of FT-IR spectra

description: Methodology Steps:

1. Structure Preparation:
o Simulation boxes for various polymers (acrylic acid, styrene, polystyrene, polypropylene, vinyl alcohol, and butyl acrylate) were constructed using crystallographic data, including space group and atomic coordinates.
o The crystallographic structures were built using VESTA software.

2. Density Functional Theory (DFT) Setup:
o Gaussian Plane Wave (GPW) DFT simulations were performed using the CP2K package with an energy cutoff of 300 Ry.
o The electronic structure was modeled using the BLYP exchange-correlation functional with dispersion corrections, GTH pseudopotentials, and a single-zeta basis set (SZV-MOLOPT-GTH).

3. Pre-optimization (Molecular Dynamics - MD):
o Structures were minimized with the steep descent algorithm (2000 steps).
o Annealing was performed in an NVT ensemble, heating from 0 K to 300 K over 1 ns with a 0.5 fs timestep.

4. Geometry Optimization:
o Post-annealing, structures were optimized using the limited-memory Broyden-Fletcher-Goldfarb-Shanno (BFGS) algorithm.
o Optimization continued until the forces were reduced below 2.0 x 10⁻⁶ Eh/Bohr.
o Orbital Transformation (OT) method with direct inversion in the iterative subspace was applied for faster convergence.

5. Vibrational Analysis:
o DFT-based vibrational analyses were conducted at the same level of theory.
o The Hessian matrix was built using a step size of 10⁻² Bohr radii with a three-point central difference approximation.
o The matrix was diagonalized to obtain eigenvalues and eigenvectors, determining normal mode frequencies.

6. IR Spectra Calculation:
o Infrared spectra were generated from normal mode analysis within the Born-Oppenheimer approximation.
o Spectral frequencies were scaled with a factor between 0.88 and 0.95, based on a Pseudo-Voigt profile fit in the 500-3800 cm⁻¹ range.
o Spectra were broadened using a Gaussian line-shape with a full width at half maximum (FWHM) of 10 cm⁻¹.

7. Vibrational Mode Assignment:
o Mode assignments were made through visual inspection of animated normal modes using the Molden program, considering the symmetry of the modes in regions of interest.


Current Spectra:
acrylic acid

polystyrene

styrene

polypropylene
DOI: 10.57760/sciencedb.21130
title: Test datasets for RamEx
title: Test datasets for RamEx

description: 1. Datasets for cross-validation of quality control methods - Bacteria. spectral datasets for common pathogenic bacteria, containing 9641 cells. Doi: 10.1093/clinchem/hvac082 - M. tuberculosis. spectra from drug-exposed MTB (both drug-sensitive and drug-resistant strains), containing 49787 cells - E. coli. Raman spectra from different drug-treated E. coli, containing 17819 cells. Doi: 10.1002/advs.202207497 - Probiotics. Raman spectra from diverse probiotic strains/species, containing 6186 cells. Doi: 10.1002/imt2.117 - Spores. dataset of fungal spore spectra from wild-type, mutant, and edited strains, containing 7437 cells2. Ramanomes from yeasts over fermentation time. Raman spectral observations spanning 0-100 hours of Saccharomyces cerevisiae fermentation, totally 9,208 cells.3. Large-scale dataset for unit tests of RamEx. large-scale bacterial dataset comprising four species (A. baumannii, H. pylori, M. abscessus, and M. tuberculosis) across 344 strains under various experimental conditions, containing 277945 cells.
description: 1. Datasets for cross-validation of quality control methods - Bacteria. spectral datasets for common pathogenic bacteria, containing 9641 cells. Doi: 10.1093/clinchem/hvac082 - M. tuberculosis. spectra from drug-exposed MTB (both drug-sensitive and drug-resistant strains), containing 49787 cells - E. coli. Raman spectra from different drug-treated E. coli, containing 17819 cells. Doi: 10.1002/advs.202207497 - Probiotics. Raman spectra from diverse probiotic strains/species, containing 6186 cells. Doi: 10.1002/imt2.117 - Spores. dataset of fungal spore spectra from wild-type, mutant, and edited strains, containing 7437 cells2. Ramanomes from yeasts over fermentation time. Raman spectral observations spanning 0-100 hours of Saccharomyces cerevisiae fermentation, totally 9,208 cells.3. Large-scale dataset for unit tests of RamEx. large-scale bacterial dataset comprising four species (A. baumannii, H. pylori, M. abscessus, and M. tuberculosis) across 344 strains under various experimental conditions, containing 277945 cells.
DOI: 10.15468/dl.6n3vvb
title: Occurrence Download

description: A dataset containing 3407057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chaetura pelagica (Linnaeus, 1758)"
 ]
}

 The dataset includes 3407057 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000191-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecqqjc
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fritillaria rugillosa"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027623-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/hqbxfi/7qqri9
title: Hannover.mp4

description: :unav
DOI: 10.25625/hqbxfi
title: Severe Hypoxemia and Pulmonary Capillary Dilatations in Pulmonary Arterial Hypertension Patients Treated with Sotatercept

description: Videos for https://doi.org/10.1164/rccm.202502-0344RL
DOI: 10.25625/hqbxfi/nbvgtq
title: Paris.mp4

description: :unav
DOI: 10.15468/dl.s53tuj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria mutica",
 "Country is Saint Kitts and Nevis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027622-250811113504898/datasets/export for details.
DOI: 10.48606/99
title: Dataset: Combining molecular dynamics simulations and scoring method to computationally model ubiquitylated linker histones in chromatosomes

description: The dataset comprises atomistic molecular dynamics simulations of ubiquitylated linker histone H1. The provided data has been stripped from solvent and subsampled with a 50 ps timestep. The six ubiquitylation sites K30, K41, K47, K51, K56, and K63 can be found in their respective folders. The starting structures were created by rotating the chi3 angle of the ubiquitylated lysine. The simulation data encompasses the simulations from these starting structures plus so-called expansion simulations started from these initial simulations. Find more info in the provided README.
DOI: 10.14459/2025mp1785105
title: Autonomous Driver Licence (ADL) dataset

description: The Autonomous Driver License (ADL) dataset reflects the challenge of autonomous driving in various domains of public traffic. To successfully master the ADL route, it is necessary that the autonomous system masters scenarios from rushed inner-city traffic to high-speeds on highways. The data set supports the preparation for the challenge in the scope of the IAA MOBILITY 2025. The data is composed of a continuous drive in the greater Munich area and includes sensor data and processed data. Sensor data includes, among others: LiDAR (Binary, PCD), RTK-GNSS (TXT), IMU (TXT), and vehicle-internal odometry data (TXT). The processed data is composed of a high-resolution, georeferenced point cloud map (Binary, PCD) and a semantic lane-level vector map (lanelet2). In addition, the dataset contains a ROS 2 bag for simulation with Autoware.