cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19150842.v1
title: Exploring the transcriptome signature associated with tolerance to <i>Penicillium expansum</i> in apple through feature selection algorithms and differential gene expression analysis

description: <i>Penicillium expansum</i> is one of the most destructive post-harvest pathogens that causes fruit spoilage in apple. This study explored the molecular response of apple to this pathogen via microarray data mining based on attribute weighting algorithms (AWAs), differential expression and pathway analyses, and multivariate statistical analysis. A total of 124 probe sets were identified by at least one AWA and these yielded 29 genes with significantly differential expression. Leave-one-out cross-validation showed that the 29-gene signature could differentiate resistant (R) and susceptible (S) cultivars with 98.65% accuracy, with most of the genes showing significant expression changes in these cultivars at 1 week post-inoculation (wpi). Many genes encoding hydrolases, reductases and proteins with zinc-finger domains showed an increased expression in the R cultivars. In particular, disease resistance protein CC-NBS-LRR, resistance-related protein E3-ubiquitin and cuticle wax biosynthesis genes displayed increased expression, especially in R cultivars at 1 and 6 wpi. The secondary metabolite biosynthesis pathway, metabolic pathway and amino acid biosynthesis pathway were commonly upregulated in both R and S cultivars, but with a greater intensity in R cultivars, while the flavonoid biosynthesis pathway was downregulated in the S cultivars at 1 h post-inoculation. This study identifies candidate targets for developing resistant cultivars.
DOI: 10.6084/m9.figshare.20188241.v1
title: Bungum_Johns_Otter-MonitorLizard-Interaction-Data

description: Raw data and R code for study on smooth-coated otter aggression towards monitor lizards in Singapore's waterways.
DOI: 10.6084/m9.figshare.25486414.v5
title: GeoTool-GPT

description: None
DOI: 10.6084/m9.figshare.28377749.v1
title: Supplementary Material for: Single Cell Transcriptomic Analysis of Myeloid Lineage Evolution from CD19 CAR-T Cell Therapy

description: Introduction: We report a case of relapse and refractory acute B lymphoblastic leukemia (r/r B-ALL) apparent turned to acute myeloid leukemia (AML), which is occasional and fatal during CAR-T treatment. There are still limited data to clarify the molecular mechanism of myeloid blast populations proliferation during CAR-T treatment.
Case Presentation: A 21-year-old man with an established history of r/r B-ALL with a complex chromosome karyotype and renal extramedullary infiltration presented to our institution. He exhibited a rapid relapse with acute monocytic leukemia 19 days after CD19 CAR-T cell infusion with extensive infiltration of skin and brain. Salvage chemotherapy was ineffective, and he subsequently succumbed to the uncontrolled invasion and infiltration of leukemia cells and hemorrhage. RNA velocity analysis predicted that HSCs differentiated into GMPs and then GMPs differentiated into myeloid lineage cells. The ANXA1-FPR1/2 axis expression was significantly increased post-treatment, which promotes tumor cell proliferation, invasion and angiogenesis. 6q deletion (6q-) was the common genetic abnormality across all cell populations, indicating that 6q- conferred a survival ability to HSCs during CAR-T cell therapy.
Conclusions: This case demonstrates potential mechanisms of clone evolution molecular events that CD19 CAR-T cell infusion accelerated the existing myeloid lineage evolution via ANXA1-FPR1/2 axis expression from HSCs with 6q-. (Cyto-)genetic aberrations and/or pathways previously not included in the risk stratification of B-ALL might well be predictive for response and outcome in the era of immunotherapy.
DOI: 10.6084/m9.figshare.29192756.v1
title: dbCAN3_out.tsv

description: Annotated data for strain MRC-7, a novel genus within the family <i>Opitutaceae</i>, obtained via the dbCAN3 server (https://bcb.unl.edu/dbCAN2/blast.php).
DOI: 10.17632/4wp7s82dmh
title: Social Media's Dynamic Impact on Collaborative Learning and Academic Success in Higher Education – A Mixed Methods Investigation

description: Social Media's Dynamic Impact on Collaborative Learning and Academic Success in Higher Education – A Mixed Methods Investigation
DOI: 10.6084/m9.figshare.26089230.v1
title: HiGTS_2012s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2012s1 contains the data from January 1, 2012 to March 31, 2012.
DOI: 10.6084/m9.figshare.8869910.v1
title: Supplementary Material for: Deep Learning Algorithms for Corneal Amyloid Deposition Quantitation in Familial Amyloidosis

description: <b><i>Objectives:</i></b> The aim of this study was to train and validate deep learning algorithms to quantitate relative amyloid deposition (RAD; mean amyloid deposited area per stromal area) in corneal sections from patients with familial amyloidosis, Finnish (FAF), and assess its relationship with visual acuity. <b><i>Methods:</i></b> Corneal specimens were obtained from 42 patients undergoing penetrating keratoplasty, stained with Congo red, and digitally scanned. Areas of amyloid deposits and areas of stromal tissue were labeled on a pixel level for training and validation. The algorithms were used to quantify RAD in each cornea, and the association of RAD with visual acuity was assessed. <b><i>Results:</i></b> In the validation of the amyloid area classification, sensitivity was 86%, specificity 92%, and F-score 81. For corneal stromal area classification, sensitivity was 74%, specificity 82%, and F-score 73. There was insufficient evidence to demonstrate correlation (Spearman’s rank correlation, –0.264, <i>p</i> = 0.091) between RAD and visual acuity (logMAR). <b><i>Conclusions:</i></b> Deep learning algorithms can achieve a high sensitivity and specificity in pixel-level classification of amyloid and corneal stromal area. Further modeling and development of algorithms to assess earlier stages of deposition from clinical images is necessary to better assess the correlation between amyloid deposition and visual acuity. The method might be applied to corneal dystrophies as well.
DOI: 10.6084/m9.figshare.12156378.v1
title: Three concomitant C-C dissociation pathways during the mechanical activation of a N-heterocyclic carbene precursor

description: NMR spectra (MNova files)
DOI: 10.6084/m9.figshare.28523648.v1
title: Codes and data for hybrid pore-scale transport modeling

description: An computational framework with experimental validation datasets for hybrid pore-scale modeling of coupled advection-diffusion processes in porous media
DOI: 10.6084/m9.figshare.6148100.v6
title: OmicsSIMLA profile

description: This is the profile required for running OmicsSIMLA.
DOI: 10.17632/2cfbny74pr
title: An inversion of quantum mechanics

description: Title of program: MATRIXFORMAT, CLSSCLFORMAT Catalogue Id: ACYP_v1_0 Nature of problem The task is to seek quantum correlations in raw probability data. A table of counts or probabilities is input to MATRIXFORMAT or to CLSSCLFORMAT. The first produces a quantum matrix model listing matrices and also trace-formula theoretical output probabilities: the second produces a classical model by being restricted to diagonal matrices. By comparing relative success of these two programs in fitting the data, user attempts to determine whether the data exhibit quantum interference phenomena, i ... Versions of this program held in the CPC repository in Mendeley Data ACYP_v1_0; MATRIXFORMAT, CLSSCLFORMAT; 10.1016/0010-4655(79)90089-4 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/bht7dv9b43
title: Dataset on ETCCDI annual precipitation indices for the Northern Savanna Agro-ecological Zone and Ghana 

description: The Datasets are the result of computations from a source gridded data with a resolution of 0.25° x 0.25° (Ampofo et al., 2023; Domínguez-Castro et al., 2020). The datasets are the results of the  analysis of the gridded netCDF precipitation dataset using Climate Data Tools (CDT) ® version 5, a component of the statistical package R 3.5.1 and developed at the International Research Institute for Climate and Society of the Columbia University. It has a Graphical User Interface (GUI) mode and has utility functions which were used for quality control, homogenization and annual computations for the above stated indices over the 56-year study period (Ampofo et al., 2023b). Other tools used were; Panoply® (https://www.giss.nasa.gov/tools/panoply/) for making customized plots from the output netCDF datasets
DOI: 10.17632/k32dph9hjc
title: Herd Behaviour in the Cryptocurrency Market: Fundamental vs. Spurious Herding

description: This dataset is used for the research paper entitled ‘Herd behaviour in the cryptocurrency market: Fundamental vs. spurious herding’ and shall not be redistributed or used for commercial purposes unless permission is duly obtained in writing from the publisher and the authors. Feel free to use it for the purposes of academic interest and future research projects. When using or referring to the data set in publications, please cite the article as follows: Senarathne, C. W., & Jianguo, W. (2019), Herd Behaviour in the Cryptocurrency Market: Fundamental vs. Spurious Herding. You may also want to cite the data set as: Senarathne, C. W., & Jianguo, Wei. (2019). Herd Behaviour in the Cryptocurrency Market: Fundamental vs. Spurious Herding. Mendeley Data, V1, doi: 10.17632/k32dph9hjc.1 For a detailed description of the data, methodology and descriptive statistics, please refer the article published.
DOI: 10.6084/m9.figshare.25872553.v2
title: MD for K_Th_U metal-silicate partitioning and thermal evolution Matlab code

description: Examples of molecular dynamics simulations outputs (CONTCAR and OSZICAR) for calculating metal-silicate partitioning of radiogenic heating elements (K, Th, and U) under extreme pressures.Matlab code for performing thermal evolution.
DOI: 10.6084/m9.figshare.3550632.v1
title: Appendix B. Additional methodological details for experiments 1 and 2.

description: Additional methodological details for experiments 1 and 2.
DOI: 10.17632/2nyjpb89bf
title: GMAW process parameters

description: Data collection of GMAW process
DOI: 10.6084/m9.figshare.13790260.v1
title: Sample Data MFC Paper

description: 3 x 5-min runs under three different states of consciousness, either awake, sleep deprived (e.g., presence of NREM), and anesthesia (Ketamine/Xylazine).
DOI: 10.6084/m9.figshare.20763676.v1
title: 01-09-2022 - SMN - Noise Induced Hearing Loss (NIHL) and vibration exposure amongst workers.docx

description: Hearing loss is irreversible and the National Institute of Occupational Safety and Health (NIOSH) has stated that NIHL (noise induced hearing loss) is one of the 10 highest rates of occupational illness in the United States. Various studies show that there is a correlation between noise and NIHL which is exacerbated by exposure to vibration. This study aims to analyze the correlation between noise and vibration exposure to NIHL in oil refinery workers. The total population in the oil refinery were 299 workers. The research design employed in this study was a descriptive study with a cross-sectional research method. The inclusion criteria applied in this study were oil and gas workers who work in oil refineries and had been exposed the noise, have periodic audiometric examination, and had exposed the hand-arm vibration. The exclusion criteria were workers who had experienced and history of hearing loss before they worked in this company, had no audiometric records, had a hobby of music and shooting, has Diabetes Mellitus illness, suffer from mix hearing sensorineural and conductive, and retired before and during the period of this research. As a result, the total sample number in this study were 108 workers. Noise level and hand-arm vibration have significant relationship as well as strong correlation with NIHL both ears status of the workers. The results showed that the workers who had exposed to noise have a higher risk of 3.5 times to suffer NIHL in both ears. Moreover, the workers who had exposed to combination between noise, vibration and have smoking habits have a higher risk of 3.9 times and 5.12 times respectively to suffer NIHL in both ears. The higher of noise and vibration level and the longer the duration of exposure, the higher the risk of NIHL
DOI: 10.6084/m9.figshare.28105088.v1
title: <b>Semantic Segmentation of Escape Ramp Scenes for Road Traffic Injury Prevention</b>

description: 与城市道路相比，高速公路上缺乏标记逃生 匝道数据集，这使得逃生匝道场景的分割成为一项具有挑战性的任务。Escape slopedo可以在紧急情况下挽救生命并最大限度地减少财产损失，使其研究具有重要的实际意义。本文旨在对逃生匝道场景进行语义分割，以减少交通事故。
DOI: 10.6084/m9.figshare.9985844.v1
title: Effects of Gamma Radiation on the Properties of the Thermoplastic Starch/Poly (Butylene Adipate-co-Terephthalate) Blends

description: The development of blends made from matrices of synthetic biodegradable polymers, and natural additives, are considered less environmentally aggressive materials. This work aimed to study the effects of gamma radiation on the properties of the thermoplastic starch (TPS)/poly(butylene adipate-co-terephthalate) (PBAT). In this work, blends of TPS/PBAT were prepared with glycerol, castor oil and TWEEN® 80, which were prepared by extrusion and then subjected to the radiation process and characterized by thermogravimetric analysis (TGA), differential scanning calorimetry (DSC), X-ray diffraction (XRD) and scanning electron microscopy (SEM). The results demonstrated increased thermal degradation for the F2 (composed by OM) and F3 (composed by OM and TWEEN® 80) regarding F0 (composed by glycerol) e F1 (composed by glycerol and TWEEN® 80) blends. A good blend component chemical interaction and partial miscibility for the blends F0 and F1 was observed and compared to the others. However, F2 and F3 blends did not present co-continuous phases; being that the XRD curve patterns were not altered by the gamma radiation. The tests performed demonstrated that the irradiated and non-irradiated samples did not have their properties significantly altered. Thus, it was concluded that it is feasible to replace castor oil with glycerol in TPS/PBAT blends.
DOI: 10.17632/fw654f83b4
title: Sex IAT and Prime Tasks_Women January 2023

description: SPSS database. Results from three IAT tasks (male vs female; male vs neutral; female vs neutral) and a Priming task (male, female, neutral trials). All participants are women. The database also contains participants age, Kinsey score and data from a sexual "Feeling Thermometer". 
The research hypothesis was that ambiphilic women would show implicit, but not explicit, biases towards sex with women.
DOI: 10.17632/rfdzsxv6dh
title: Supporting Information for [Terminal suturing between the Tarim Craton and the Yili-Central Tianshan arc: Insights from mélange-ocean plate stratigraphy, detrital zircon ages and provenance of the South Tianshan accretionary complex]

description: Supporting Information for [Terminal suturing between the Tarim Craton and the Yili-Central Tianshan arc: Insights from mélange-ocean plate stratigraphy, detrital zircon ages and provenance of the South Tianshan accretionary complex]
DOI: 10.6084/m9.figshare.1276043.v1
title: Patch file for lib-cofold.c

description: This file identifies the changes made to the lib-cofold.c file in the Vienna RNA websuite 8.1.3
DOI: 10.6084/m9.figshare.19102808.v1
title: Wound healing table

description: wound healing table
DOI: 10.6084/m9.figshare.24782706.v1
title: Dataset for 'Link Between the Impact Mechanisms of Granular Flow-Dam Interaction and the Generated Seismic Signal: Insights from Laboratory Experiments'

description: (1) Four'* Degrees.xlsx' files contain the seismic signal data and base force data of 24 groups of experiments in this study. The four files correspond to four different flume inclination angles. (2) Each'* Degrees.xlsx' file contains 6 sheets, corresponding to 5 different pre-retained material heights and control experiments. Each sheet has 7 columns of data, the first column is time, the unit is second, the 2-4 column is three-axis seismic signal data, the unit is m/s2, and the 5-7 column is three-axis base force data, the unit is N. (3) File 'Impact force.xlsx' refers to the impact force of vertical barrier for Tests D20_25H, D25_25H and D33_25H. File 'Time Selection.xlsx' contains time selections from 0 to 6 s for different experimental data.(4) The sampling frequency is 1000 Hz.
DOI: 10.6084/m9.figshare.28089413.v1
title: Original EEG, EDA, HRV, HR datasets analyzed using TOPSIS

description: This study evaluates the impact of 2D and 3D navigation interfaces of AR-HUD navigation interfaces on drivers’ spatial learning using continuous and objective physiological measures, including electroencephalography (EEG), electrodermal activity (EDA), heart rate (HR), and heart rate variability (HRV). A
DOI: 10.6084/m9.figshare.28971413.v1
title: Nanostring raw data PWH and PWH_ all samples included in final analysis

description: Transcriptomic analysi_ nanostring fibrosis panel.
DOI: 10.17632/7f7kjjb8sb
title: Paleoenvironmental reconstitution of a coastal tropical peatland and its relationship with the Holocene sea level variation (SE Brazil)

description: Elemental and isotopic geochemistry data at regular intervals of an Organosol profile - Brazil.
DOI: 10.17632/7z4s4srxry
title: Comentario al libro "Universidad, sentido y crítica"

description: CRÍTICA AL LIBRO "UNIVERSIDAD SENTIDO Y CRITICA"
DOI: 10.6084/m9.figshare.24099879.v1
title: Data "Expression of a-Amylase Subtilisin-inhibitor from wheat in E. coli", 2024

description: The data are experimental raw data with the corresponding evaluation. This includes the formulas for calculating the values and the supplementary explanations for obtaining the data and also for the evaluation. The data of the growth curves, the doubling time, the protein amounts and the inhibition of alpha-amylase and subtilisin A by the different WASI concentrations were shown.
DOI: 10.6084/m9.figshare.29019551.v2
title: Phytase Supplemention in Catfish

description: The present study assessed the effects of phytase on the transcriptomic profiles in the liver and intestine of hybrid catfish, including samples of 16 and each feeding group with 4 replicates in liver and intestine tissues, respectively. The description of the files is as follows.File Name DescriptionCACFKANXX_s4_1_GSLv3-7_01_SL218208.fastq.gz Control feed_Liver Rep1CACFKANXX_s4_1_GSLv3-7_02_SL218209.fastq.gz Control feed_Liver Rep2CACFKANXX_s4_1_GSLv3-7_03_SL218210.fastq.gz Control_feed Liver Rep3CACFKANXX_s4_1_GSLv3-7_04_SL218211.fastq.gz Control_feed Liver Rep4CACFKANXX_s4_1_GSLv3-7_09_SL218216.fastq.gz Control_feed Intestine Rep1CACFKANXX_s4_1_GSLv3-7_10_SL218217.fastq.gz Control_feed Intestine Rep2CACFKANXX_s4_1_GSLv3-7_11_SL218218.fastq.gz Control_feed Intestine Rep3CACFKANXX_s4_1_GSLv3-7_12_SL218219.fastq.gz Control_feed Intestine Rep4CACFKANXX_s4_1_GSLv3-7_05_SL218212.fastq.gz Phytase_feed Liver Rep1CACFKANXX_s4_1_GSLv3-7_06_SL218213.fastq.gz Phytase_feed Liver Rep2CACFKANXX_s4_1_GSLv3-7_07_SL218214.fastq.gz Phytase_feed Liver Rep3CACFKANXX_s4_1_GSLv3-7_08_SL218215.fastq.gz Phytase_feed Liver Rep4CACFKANXX_s4_1_GSLv3-7_13_SL218220.fastq.gz Phytase_feed Intestine Rep1CACFKANXX_s4_1_GSLv3-7_14_SL218221.fastq.gz Phytase_feed Intestine Rep2CACFKANXX_s4_1_GSLv3-7_15_SL218222.fastq.gz Phytase_feed Intestine Rep3CACFKANXX_s4_1_GSLv3-7_16_SL218223.fastq.gz Phytase_feed Intestine Rep4<br>
DOI: 10.17632/hjn9d5tfj3
title: Data for: Holistic economic analysis of building integrated photovoltaics (BIPV) system: case studies evaluation

description: Solar radiation data for the selected cities as well as LCCA and DPP calculation for BIPV system.
DOI: 10.17632/x4m3235d8h
title: Data set on Utilization of Digital Services by Farmers

description: The data is the product of our desire to understand how small agricultural
communities in Tamilnadu, India utilize digital tools. To better understand how farmers
(n=211) access and use smart phones and e-service centres (public and private), we
developed a survey schedule. Data collection began in March 2022. We discovered that
practically all of the small farmers have access to electronic service centres and own mobile
phones. These instruments are reported to be less frequently used for general and agricultural
duties, apart from entertainment. The installation of cutting-edge ICT infrastructure for
agricultural supply chain activities depends on this information.
DOI: 10.6084/m9.figshare.11871174.v1
title: Information & data files concerning a study of the Confinement of Ultrarelativistic Electron Remnant Belts to Low L-shells

description: These Information files and data files should be considered with our paper "On the Confinement of Ultrarelativistic Electron Remnant Belts to Low L-shells" by V. Pinto, X.-J. Zhang, D. Mourenas, et al., to appear the Journal of Geophysical Research-Space Physics. They include a PDF file "Information..." that details the 18 considered events of remnant belts of ultra-relativistic electrons observed in 2012-2017 by the Van Allen Probes and the method of production of the data files, There are also data files of ULF wave power as a function of time for the different pairs of stations provided in "date-power-new+" dat files (in the "ULFWavePower.zip" file). LANL* LCDS calculations for the considered periods are provided in "Lmax-date-Txx" txt files (in the "LANL-LCDS.zip" file) for T96 and T05 magnetic field models (xx in file name indicating the UT hour of start and LCDS being calculated in steps of 5 min). The electron PSD profiles obtained from the Van Allen Probes during/nearby each event are provided in the "PSD-VanAllenProbes" PDF file.<br>All the data used here are freely available from different repositories (see below). We gratefully acknowledge Van Allen Probes ECT-REPT/MagEIS and EMFISIS data freely available from https://www.rbsp-ect.lanl.gov/ and https://emfisis.physics.uiowa.edu/data/. We are also grateful to S. Mende and C.T. Russell for the Prince George and Athabasca magnetometer data from the THEMIS GMAG network freely available at http://themis.igpp.ucla.edu/gmag_desc.shtml (where magnetometer data from the following stations are also available), the AUTUMNX magnetometer network funded through the Canadian Space Agency Geospace Observatory for the Athabasca University magnetometer data at http://autumn.athabascau.ca/, the Tromso Geophysical Observatory, University of TromsoÂž Norway, for the Dombas magnetometer data at http://flux.phys.uit.no/geomag.html, the Geophysical Institute of the University of Alaska at http://magnet.asf.alaska.edu/ for the Trapper Creek magnetometer data, and the Canadian Magnetic Observatory Network maintained and operated by the Geological Survey of Canada at https://www.geomag.nrcan.gc.ca/index-en.php for the Meanook magnerometer data used in this study. We also thank I.R. Mann, D.K. Milling, and the CARISMA team for the PINA and LCL magnetometer data obtained from http://data.carisma.ca, provided by the University of Alberta with founding from the Canadian Space Agency. We acknowledge the CXD team at LANL for GPS electron flux measurements freely available from NOAA at https://www.ngdc.noaa.gov/stp/spaceweather/satellite-data/satellitesystems/gps/. OMNI data is freely available from CDAWeb https://cdaweb.gsfc.nasa.gov<br><br>
DOI: 10.6084/m9.figshare.13567655.v2
title: liftoff_predictions

description: These are GFF files of the 90 giardia genomes generated using liftoff and AWB and BGS reference genomes