cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/13523837.v2
title: Marker information of the XT-50K panel

description: The data contains coordinates and multi-trait GWAS summary statistics of the prioritised 46K variants from the XT-50K panel. This is part of the results from 'Xiang R, et al. (2021) Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications, In Press.'. The marker information is distributed under the Creative Commons Attribution-NonCommercial License 4.0 (CC BY-NC) for non-commercial research. Parties interested in the commercial use of the XT-50K markers should contact the authors of the manuscript in the first instance, to discuss lodging a formal request.<br>Reference: Xiang R, et al. (2021) Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications In Press.
DOI: 10.26188/13523837
title: Marker information of the XT-50K panel

description: The data contains coordinates and multi-trait GWAS summary statistics of the prioritised 46K variants from the XT-50K panel. This is part of the results from 'Xiang R, et al. (2021) Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications, In Press.'. The marker information is distributed under the Creative Commons Attribution-NonCommercial License 4.0 (CC BY-NC) for non-commercial research. Parties interested in the commercial use of the XT-50K markers should contact the authors of the manuscript in the first instance, to discuss lodging a formal request.<br>Reference: Xiang R, et al. (2021) Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications In Press.
DOI: 10.26188/13546472.v1
title: The assignment of cattle ancestral alleles

description: This file contains data of the assignment of cattle ancestral alleles for 42,573,455 sites. Please see the description 'cattle_ances_decript_Jan2021.docx' for more details.
DOI: 10.26188/13546472
title: The assignment of cattle ancestral alleles

description: This file contains data of the assignment of cattle ancestral alleles for 42,573,455 sites. Please see the description 'cattle_ances_decript_Jan2021.docx' for more details.
DOI: 10.26188/13602743.v1
title: KnightsEtAlMs_PilotDistData.xlsx

description: The data are three distance sampling surveys of Australian plants; <i>Brassica sp.</i>, <i>Grevillea australis </i>adults and <i>Grevillea australis </i>seedlings. Data were collected in 2011. Transects were 100 m total for the <i>Brassica</i> survey, 20 m total for each of the <i>Grevillea</i> surveys. Observations were recorded to a max. perpendicular distance of 2 m for the <i>Brassica</i> and <i>G. australis</i> seedlings surveys, and 5 m for the <i>G. australis</i> adult survey.
DOI: 10.26188/13602743
title: KnightsEtAlMs_PilotDistData.xlsx

description: The data are three distance sampling surveys of Australian plants; <i>Brassica sp.</i>, <i>Grevillea australis </i>adults and <i>Grevillea australis </i>seedlings. Data were collected in 2011. Transects were 100 m total for the <i>Brassica</i> survey, 20 m total for each of the <i>Grevillea</i> surveys. Observations were recorded to a max. perpendicular distance of 2 m for the <i>Brassica</i> and <i>G. australis</i> seedlings surveys, and 5 m for the <i>G. australis</i> adult survey.
DOI: 10.6084/m9.figshare.24220278
title: Script3 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Code to compare and validate models by simulating the total trajectory predictions.
DOI: 10.6084/m9.figshare.24220278.v1
title: Script3 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Code to compare and validate models by simulating the total trajectory predictions.
DOI: 10.6084/m9.figshare.24220281
title: Script1 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Codes to calculate Summed Probability Densities (SPDs) and to SPD, to smooth out time-series.
DOI: 10.6084/m9.figshare.24220281.v1
title: Script1 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Codes to calculate Summed Probability Densities (SPDs) and to SPD, to smooth out time-series.
DOI: 10.34740/kaggle/dsv/6569752
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.24220284
title: Dataset1-6 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Raw and processed datasets
DOI: 10.6084/m9.figshare.24220284.v1
title: Dataset1-6 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Raw and processed datasets
DOI: 10.6084/m9.figshare.24220287
title: Script2 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Code to implement population dynamic models.
DOI: 10.6084/m9.figshare.24220287.v1
title: Script2 from Towards understanding human–environment feedback loops: the Atacama Desert case

description: Code to implement population dynamic models.
DOI: 10.34740/kaggle/dsv/6569750
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.24155145.v1
title: Supplementary Material for: Protease-activated receptor 2 controls vascular smooth muscle cell proliferation in cyclic AMP-dependent protein kinase/mitogen-activated protein kinase kinase 1/2-dependent manner

description: Introduction: Cardiovascular disorders are characterized by vascular smooth muscle (VSM) transition from a contractile to proliferative state. Protease-activated receptor 2 (PAR2) involvement in this phenotypic conversion remains unclear. We hypothesized that PAR2 controls VSM cell proliferation in phenotype-dependent manner and through specific protein kinases. Methods: Rat clonal low (PLo; P3-P6) and high passage (PHi; P10-P15) VSM cells were established as respective models of quiescent and proliferative cells, based on reduced PKG-1 and VASP. Western blotting determined expression of cytoskeletal/contractile proteins, PAR2, and select protein kinases. DNA synthesis and cell proliferation were measured 24-72 hours following PAR2 agonism (SLIGRL; 100nM-10μM) with/without PKA (PKI; 10μM), MEK1/2 (PD98059; 10μM), and PI3K (LY294002; 1μM) blockade. Results: PKG-1, VASP, SM22α, calponin, cofilin, and PAR2 were reduced in PHi versus PLo cells. Following PAR2 agonism, DNA synthesis and cell proliferation increased in PLo cells but decreased in PHi cells. Western analyses showed reduced PKA, MEK1/2, and PI3K in PHi versus PLo cells, and kinase blockade revealed PAR2 controls VSM cell proliferation through PKA/MEK1/2. Discussion: Findings highlight PAR2 and PAR2-driven PKA/MEK1/2 in control of VSM cell growth and provide evidence for continued investigation of PAR2 in VSM pathology.
DOI: 10.6084/m9.figshare.22620790.v1
title: Additional file 8 of Sex-biased molecular differences in lung adenocarcinoma are ethnic and smoking specific

description: Additional file 8: Table S19. The DEGs identified from the comparison between female and male responders to ICB in the GSE135222 dataset.
DOI: 10.6084/m9.figshare.22620787
title: Additional file 7 of Sex-biased molecular differences in lung adenocarcinoma are ethnic and smoking specific

description: Additional file 7: Table S18. The DEGs identified from the comparison between female and male smokers with LUAD in the TCGA cohort (Non-Asian).
DOI: 10.6084/m9.figshare.22620704
title: Additional file 4 of Identification of the shared genes and immune signatures between systemic lupus erythematosus and idiopathic pulmonary fibrosis

description: Additional file 4. Common genes in SLE and IPF.
DOI: 10.5281/zenodo.10633731
title: Non-destructive determination of taste-related compounds in tomato using NIR spectra

description: Near infrared (NIR) diffuse reflectance was used to predict the contents of taste-related compounds of tomato. Models were obtained for several varietal types including processing tomato, cherry and cocktail tomato, mid-sized tomato and tomato landraces, with a wide range of varieties. Good performance was obtained for the prediction of soluble solids, sugars and acids, considering a non-destructive methodology applied to fruits with different internal structure. Specific models averaged RMSEP (%mean) values lower than 6.1% for SSC, 13.3% for fructose, 14.1% for glucose, 12.7% for citric acid, 13.8% for malic acid and 21.9% for glutamic acid. The performance was dependent on varietal type. General models with a higher number of samples and variation did not improve the performance of specific models. The models obtained, either specific or general, couldn't be extrapolated to external assays and an internal calibration would be required for each assay in order to provide a reliable performance.

Ibáñez, G., Cebolla-Cornejo, J., Martí, R., Roselló, S. and Valcárcel, M., 2019. Non-destructive determination of taste-related compounds in tomato using NIR spectra. Journal of Food Engineering, 263, pp.237-242






For more detailed data contact the authors

AckowledgementsThis research was performed despite the lack of direct public funding for its development and thanks to the enthusiasm of the authors.The authors thank Dr. Lahoz and Dr. Campillo for providing processing tomato samples and Dr. Moreno for providing samples from tomato landraces. G. Ibañez thanks Universitat Jaume I for funding his pre-doctoral grant (PREDOC/2015/45).








Link to publication:
https://doi.org/10.1016/j.jfoodeng.2019.07.004


Link to repository:
http://hdl.handle.net/10234/183798
DOI: 10.5281/zenodo.10633732
title: Non-destructive determination of taste-related compounds in tomato using NIR spectra

description: Near infrared (NIR) diffuse reflectance was used to predict the contents of taste-related compounds of tomato. Models were obtained for several varietal types including processing tomato, cherry and cocktail tomato, mid-sized tomato and tomato landraces, with a wide range of varieties. Good performance was obtained for the prediction of soluble solids, sugars and acids, considering a non-destructive methodology applied to fruits with different internal structure. Specific models averaged RMSEP (%mean) values lower than 6.1% for SSC, 13.3% for fructose, 14.1% for glucose, 12.7% for citric acid, 13.8% for malic acid and 21.9% for glutamic acid. The performance was dependent on varietal type. General models with a higher number of samples and variation did not improve the performance of specific models. The models obtained, either specific or general, couldn't be extrapolated to external assays and an internal calibration would be required for each assay in order to provide a reliable performance.

Ibáñez, G., Cebolla-Cornejo, J., Martí, R., Roselló, S. and Valcárcel, M., 2019. Non-destructive determination of taste-related compounds in tomato using NIR spectra. Journal of Food Engineering, 263, pp.237-242






For more detailed data contact the authors

AckowledgementsThis research was performed despite the lack of direct public funding for its development and thanks to the enthusiasm of the authors.The authors thank Dr. Lahoz and Dr. Campillo for providing processing tomato samples and Dr. Moreno for providing samples from tomato landraces. G. Ibañez thanks Universitat Jaume I for funding his pre-doctoral grant (PREDOC/2015/45).








Link to publication:
https://doi.org/10.1016/j.jfoodeng.2019.07.004


Link to repository:
http://hdl.handle.net/10234/183798
DOI: 10.6084/m9.figshare.22623931
title: Additional file 1 of Study of FOXO1-interacting proteins using TurboID-based proximity labeling technology

description: Additional file 1
DOI: 10.6084/m9.figshare.22623931.v1
title: Additional file 1 of Study of FOXO1-interacting proteins using TurboID-based proximity labeling technology

description: Additional file 1
DOI: 10.6084/m9.figshare.24635439.v3
title: Main dataset from Saeedi et al. 2024 Nature communications

description: <b>Main dataset from Saeedi et al. 2023.</b>Companion code located at: https://github.com/alirezasaeedi1988/Saeedi-et-al-2024<br>Detailed information about the provided files can be found in the GitHub repository as well.<br><br>Supplementary videos are located at: https://doi.org/10.6084/m9.figshare.20365056.v2<br>Please always check the latest version of these repositories for more extended data.
DOI: 10.6084/m9.figshare.22620698.v1
title: Additional file 2 of Identification of the shared genes and immune signatures between systemic lupus erythematosus and idiopathic pulmonary fibrosis

description: Additional file 2. microRNA in SLE.
DOI: 10.6084/m9.figshare.22620701.v1
title: Additional file 3 of Identification of the shared genes and immune signatures between systemic lupus erythematosus and idiopathic pulmonary fibrosis

description: Additional file 3. microRNA in IPF.
DOI: 10.6084/m9.figshare.22620704.v1
title: Additional file 4 of Identification of the shared genes and immune signatures between systemic lupus erythematosus and idiopathic pulmonary fibrosis

description: Additional file 4. Common genes in SLE and IPF.
DOI: 10.6084/m9.figshare.22620772.v1
title: Additional file 2 of Sex-biased molecular differences in lung adenocarcinoma are ethnic and smoking specific

description: Additional file 2: Table S13. The DEGs identified from the comparison between all female and male LUADs in the OncoSG cohort (Asian).
DOI: 10.6084/m9.figshare.22620790
title: Additional file 8 of Sex-biased molecular differences in lung adenocarcinoma are ethnic and smoking specific

description: Additional file 8: Table S19. The DEGs identified from the comparison between female and male responders to ICB in the GSE135222 dataset.
DOI: 10.6084/m9.figshare.7943939
title: Additional file 2: of LncRNA ENST00000539653 acts as an oncogenic factor via MAPK signalling in papillary thyroid cancer

description: : Figure S1. Flowchart of microarray analysis or validation study. Figure S2. ENS-653 chromosomal location. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.7943939.v1
title: Additional file 2: of LncRNA ENST00000539653 acts as an oncogenic factor via MAPK signalling in papillary thyroid cancer

description: : Figure S1. Flowchart of microarray analysis or validation study. Figure S2. ENS-653 chromosomal location. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.7943933.v1
title: Additional file 1: of LncRNA ENST00000539653 acts as an oncogenic factor via MAPK signalling in papillary thyroid cancer

description: Table S1. Patient demographic and baseline characteristics of the study population. Table S2. Demographic and baseline characteristics of papillary thyroid cancer patients selected for microarray profiling. Table S3. Sequences of lncRNAs. Table S4. Correlation of the expression of ENS-653 with clinicopathological features in TCGA PTC cohort. Table S5. Regression analysis of association of ENS653 level with BRAF (V600E) mutation or age in TCGA PTC cohort. (ZIP 67 kb)
DOI: 10.6084/m9.figshare.23148310.v1
title: New paternity data from Reproductive inequality among males in the genus <i>Pan</i>

description: Reproductive inequality, or reproductive skew, drives natural selection, but has been difficult to assess, particularly for males in species with promiscuous mating and slow life histories, such as bonobos (<i>Pan paniscus</i>) and chimpanzees (<i>Pan troglodytes</i>). Although bonobos are often portrayed as more egalitarian than chimpanzees, genetic studies have found high male reproductive skew in bonobos. Here, we discuss mechanisms likely to affect male reproductive skew in <i>Pan</i>, then re-examine skew patterns using paternity data from published work and new data from the Kokolopori Bonobo Reserve, Democratic Republic of Congo and Gombe National Park, Tanzania. Using the multinomial index (<i>M</i>), we found considerable overlap in skew between the species, but the highest skew occurred among bonobos. Additionally, for two of three bonobo communities, but no chimpanzee communities, the highest ranking male had greater siring success than predicted by priority-of-access. Thus, an expanded dataset covering a broader demographic range confirms that bonobos have high male reproductive skew. Detailed comparison of data from <i>Pan</i> highlights that reproductive skew models should consider male–male dynamics including the effect of between-group competition on incentives for reproductive concessions, but also female grouping patterns and factors related to male–female dynamics including the expression of female choice.This article is part of the theme issue ‘Evolutionary ecology of inequality’.
DOI: 10.6084/m9.figshare.24440544
title: Efficacy of Bhramari pranayama and Om chanting on asthma control, quality of life, and airway inflammation in asthmatic children: an open-label randomized controlled trial

description: To explore the efficacy of combination of <i>Bhramari pranayama</i> and <i>om</i> chanting as an adjunct to standard pharmacological treatment on asthma control, quality of life, pulmonary function, and airway inflammation in asthmatic children. Children (<i>n</i> = 110; 8–15 years) with uncontrolled or partly controlled asthma were recruited from the Pediatric Chest Clinic of All India Institute of Medical Sciences, New Delhi. Eligible participants were randomized to either home-based online <i>Bhramari pranayama</i> and <i>om</i> chanting plus standard treatment (YI + ST) group, or standard treatment (ST) alone group. Primary outcome measures were 12-week change in level of asthma symptom control; asthma control questionnaire (ACQ) score, spirometry indices, impulse oscillometry parameters, and pediatric asthma quality of life questionnaire (PAQLQ) score. Secondary outcome was a change in fractional exhaled nitric oxide (FeNO) levels at 12 weeks. Beginning from the enrollment, every participant was evaluated at 0, 2, 6, and 12 weeks. After 12 weeks of intervention, higher proportion (68.2%) of children were found to have controlled asthma symptoms in the YI + ST group as compared to ST group (38.5%) according to per protocol analysis (<i>p</i> = 0.03). When compared to ST group, children in YI + ST group showed significantly lower ACQ score, higher PAQLQ score and reduced FeNO levels. No significant changes were observed for the lung function parameters. Children practicing <i>Bhramari pranayama</i> and o<i>m chanting</i> for 12 weeks have better asthma symptom control, quality of life, and reduced airway inflammation than those taking standard pharmacotherapy alone.
DOI: 10.6084/m9.figshare.24440544.v1
title: Efficacy of Bhramari pranayama and Om chanting on asthma control, quality of life, and airway inflammation in asthmatic children: an open-label randomized controlled trial

description: To explore the efficacy of combination of <i>Bhramari pranayama</i> and <i>om</i> chanting as an adjunct to standard pharmacological treatment on asthma control, quality of life, pulmonary function, and airway inflammation in asthmatic children. Children (<i>n</i> = 110; 8–15 years) with uncontrolled or partly controlled asthma were recruited from the Pediatric Chest Clinic of All India Institute of Medical Sciences, New Delhi. Eligible participants were randomized to either home-based online <i>Bhramari pranayama</i> and <i>om</i> chanting plus standard treatment (YI + ST) group, or standard treatment (ST) alone group. Primary outcome measures were 12-week change in level of asthma symptom control; asthma control questionnaire (ACQ) score, spirometry indices, impulse oscillometry parameters, and pediatric asthma quality of life questionnaire (PAQLQ) score. Secondary outcome was a change in fractional exhaled nitric oxide (FeNO) levels at 12 weeks. Beginning from the enrollment, every participant was evaluated at 0, 2, 6, and 12 weeks. After 12 weeks of intervention, higher proportion (68.2%) of children were found to have controlled asthma symptoms in the YI + ST group as compared to ST group (38.5%) according to per protocol analysis (<i>p</i> = 0.03). When compared to ST group, children in YI + ST group showed significantly lower ACQ score, higher PAQLQ score and reduced FeNO levels. No significant changes were observed for the lung function parameters. Children practicing <i>Bhramari pranayama</i> and o<i>m chanting</i> for 12 weeks have better asthma symptom control, quality of life, and reduced airway inflammation than those taking standard pharmacotherapy alone.
DOI: 10.34740/kaggle/dsv/7588659
title: HGR-Dataset
DOI: 10.6084/m9.figshare.23148313.v1
title: New data for Nonac's B, M, and most successful sire's share from Reproductive inequality among males in the genus <i>Pan</i>

description: Reproductive inequality, or reproductive skew, drives natural selection, but has been difficult to assess, particularly for males in species with promiscuous mating and slow life histories, such as bonobos (<i>Pan paniscus</i>) and chimpanzees (<i>Pan troglodytes</i>). Although bonobos are often portrayed as more egalitarian than chimpanzees, genetic studies have found high male reproductive skew in bonobos. Here, we discuss mechanisms likely to affect male reproductive skew in <i>Pan</i>, then re-examine skew patterns using paternity data from published work and new data from the Kokolopori Bonobo Reserve, Democratic Republic of Congo and Gombe National Park, Tanzania. Using the multinomial index (<i>M</i>), we found considerable overlap in skew between the species, but the highest skew occurred among bonobos. Additionally, for two of three bonobo communities, but no chimpanzee communities, the highest ranking male had greater siring success than predicted by priority-of-access. Thus, an expanded dataset covering a broader demographic range confirms that bonobos have high male reproductive skew. Detailed comparison of data from <i>Pan</i> highlights that reproductive skew models should consider male–male dynamics including the effect of between-group competition on incentives for reproductive concessions, but also female grouping patterns and factors related to male–female dynamics including the expression of female choice.This article is part of the theme issue ‘Evolutionary ecology of inequality’.
DOI: 10.6084/m9.figshare.23148313
title: New data for Nonac's B, M, and most successful sire's share from Reproductive inequality among males in the genus <i>Pan</i>

description: Reproductive inequality, or reproductive skew, drives natural selection, but has been difficult to assess, particularly for males in species with promiscuous mating and slow life histories, such as bonobos (<i>Pan paniscus</i>) and chimpanzees (<i>Pan troglodytes</i>). Although bonobos are often portrayed as more egalitarian than chimpanzees, genetic studies have found high male reproductive skew in bonobos. Here, we discuss mechanisms likely to affect male reproductive skew in <i>Pan</i>, then re-examine skew patterns using paternity data from published work and new data from the Kokolopori Bonobo Reserve, Democratic Republic of Congo and Gombe National Park, Tanzania. Using the multinomial index (<i>M</i>), we found considerable overlap in skew between the species, but the highest skew occurred among bonobos. Additionally, for two of three bonobo communities, but no chimpanzee communities, the highest ranking male had greater siring success than predicted by priority-of-access. Thus, an expanded dataset covering a broader demographic range confirms that bonobos have high male reproductive skew. Detailed comparison of data from <i>Pan</i> highlights that reproductive skew models should consider male–male dynamics including the effect of between-group competition on incentives for reproductive concessions, but also female grouping patterns and factors related to male–female dynamics including the expression of female choice.This article is part of the theme issue ‘Evolutionary ecology of inequality’.