cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20423616.v1
title: Intersystem-Crossing in the Entrance Channel without Heavy Atoms: the reaction of O(3P) with pyridine

description: Source data files for Figures 2, 3 and 4 of the main text.
DOI: 10.6084/m9.figshare.20423616
title: Intersystem-Crossing in the Entrance Channel without Heavy Atoms: the reaction of O(3P) with pyridine

description: Source data files for Figures 2, 3 and 4 of the main text.
DOI: 10.6084/m9.figshare.21195133.v1
title: DataSupplement-Egenvall et al 2022-ReintensionTrotters.xlsx

description: The file provides the raw data set and eth different models used for statistical analysis.
DOI: 10.6084/m9.figshare.21195133
title: DataSupplement-Egenvall et al 2022-ReintensionTrotters.xlsx

description: The file provides the raw data set and eth different models used for statistical analysis.
DOI: 10.25919/k4zh-pa22
title: Parkes observations for project P1156 semester 2022APRS_11

description: The discovery of a repeating fast radio burst (FRB) 20200120E localized to a globular cluster (GC) of the nearby (~3.6 Mpc) M81 galaxy challenged our current understanding of FRBs. Its location in an old stellar system and proximity to the Earth (40 times closer than any other extragalactic FRB detected) have profound implications on the origin of FRBs and the number density and luminosity of this type of source. Motivated by this discovery, we propose to search for FRBs targeting at another nearby elliptical galaxy, Centaurus A. Its relative proximity (~3.5 Mpc), combined with its richness in GCs (&gt;1200), makes Centaurus A the best target in the sky for detecting new FRB sources in GCs. Such a targeted survey will allow us to constrain the event rate and luminosity of FRBs from GCs and hence understand their contribution to the cosmological FRB rate and shed new light on the formation of neutron stars in GCs.
DOI: 10.5281/zenodo.7127777
title: Global amplification factors for tsunami inundation

description: <strong>Global tsunami amplification factors used for estimation of tsunami run-up, based on wave input from offshore mariograms.</strong> The off-shore maximum surface elevation is multiplied by the factor to achieve the MIH estimation. Two sets of factors are included, one for the Mediterranean Sea (Glimsdal et al., 2019) and one set of global factors (Løvholt et al., 2012). The factors depends on the wave period, polarity and coastal location. The primary objective of this service will be to give scientists a tool for regional tsunami hazard evaluations, based on time series extracted by tsunami propagation models, without running computational costly run-up models along the coastlines. Example on global evaluation of MIH is found in Figure 2. The model will provide the following features: Interface for extraction of the wave characteristics from off-shore mariograms (time history of the surface elevation at a gauge) Extract the amplification factors based on the wave characteristics Calculation of the maximum inundation height Examples on Python-codes that can be used to calculate factors for different types of input will be added soon. The method is described in the following open access publications: https://link.springer.com/article/10.1007%2Fs00024-019-02091-w This service is part of the <strong>candidate Thematic Core Service for tsunami</strong> and will be integrated into the <strong>Integrated Core Service Data </strong>Portal of the <strong>European Plate Observing System (EPOS)</strong>.
description: Presently only the dataset as look up tables are identified. Additional software for extracting factors will be provided.
DOI: 10.5281/zenodo.7127776
title: Global amplification factors for tsunami inundation

description: <strong>Global tsunami amplification factors used for estimation of tsunami run-up, based on wave input from offshore mariograms.</strong> The off-shore maximum surface elevation is multiplied by the factor to achieve the MIH estimation. Two sets of factors are included, one for the Mediterranean Sea (Glimsdal et al., 2019) and one set of global factors (Løvholt et al., 2012). The factors depends on the wave period, polarity and coastal location. The primary objective of this service will be to give scientists a tool for regional tsunami hazard evaluations, based on time series extracted by tsunami propagation models, without running computational costly run-up models along the coastlines. Example on global evaluation of MIH is found in Figure 2. The model will provide the following features: Interface for extraction of the wave characteristics from off-shore mariograms (time history of the surface elevation at a gauge) Extract the amplification factors based on the wave characteristics Calculation of the maximum inundation height Examples on Python-codes that can be used to calculate factors for different types of input will be added soon. The method is described in the following open access publications: https://link.springer.com/article/10.1007%2Fs00024-019-02091-w This service is part of the <strong>candidate Thematic Core Service for tsunami</strong> and will be integrated into the <strong>Integrated Core Service Data </strong>Portal of the <strong>European Plate Observing System (EPOS)</strong>.
description: Presently only the dataset as look up tables are identified. Additional software for extracting factors will be provided.
DOI: 10.5281/zenodo.7127736
title: Data from the rfPred R package

description: Large dataset to be used with the rfPred R package
DOI: 10.5281/zenodo.7127735
title: Data from the rfPred R package

description: Large dataset to be used with the rfPred R package
DOI: 10.6084/m9.figshare.21251982
title: Supplementary Material for: Evaluation of Outcomes of Peritoneal Dialysis Patients in the Post-COVID-19 Period: A National Multicenter Case-Control Study from Turkey

description: <b><i>Introduction:</i></b> There are not enough data on the post-CO­VID-19 period for peritoneal dialysis (PD) patients affected from COVID-19. We aimed to compare the clinical and laboratory data of PD patients after COVID-19 with a control PD group. <b><i>Methods:</i></b> This study, supported by the Turkish Society of Nephrology, is a national, multicenter retrospective case-control study involving adult PD patients with confirmed COVID-19, using data collected from April 21, 2021, to June 11, 2021. A control PD group was also formed from each PD unit, from patients with similar characteristics but without COVID-19. Patients in the active period of COVID-19 were not included. Data at the end of the first month and within the first 90 days, as well as other outcomes, including mortality, were investigated. <b><i>Results:</i></b> A total of 223 patients (COVID-19 group: 113, control group: 110) from 27 centers were included. The duration of PD in both groups was similar (median [IQR]: 3.0 [1.88–6.0] years and 3.0 [2.0–5.6]), but the patient age in the COVID-19 group was lower than that in the control group (50 [IQR: 40–57] years and 56 [IQR: 46–64] years, <i>p</i> &lt; 0.001). PD characteristics and baseline laboratory data were similar in both groups, except serum albumin and hemoglobin levels on day 28, which were significantly lower in the COVID-19 group. In the COVID-19 group, respiratory symptoms, rehospitalization, lower respiratory tract infection, change in PD modality, UF failure, and hypervolemia were significantly higher on the 28th day. There was no significant difference in laboratory parameters at day 90. Only 1 (0.9%) patient in the COVID-19 group died within 90 days. There was no death in the control group. Respiratory symptoms, malnutrition, and hypervolemia were significantly higher at day 90 in the COVID-19 group. <b><i>Conclusion:</i></b> Mortality in the first 90 days after COVID-19 in PD patients with COVID-19 was not different from the control PD group. However, some patients continued to experience significant problems, especially respiratory system symptoms, malnutrition, and hypervolemia.
DOI: 10.6084/m9.figshare.21251982.v1
title: Supplementary Material for: Evaluation of Outcomes of Peritoneal Dialysis Patients in the Post-COVID-19 Period: A National Multicenter Case-Control Study from Turkey

description: <b><i>Introduction:</i></b> There are not enough data on the post-CO­VID-19 period for peritoneal dialysis (PD) patients affected from COVID-19. We aimed to compare the clinical and laboratory data of PD patients after COVID-19 with a control PD group. <b><i>Methods:</i></b> This study, supported by the Turkish Society of Nephrology, is a national, multicenter retrospective case-control study involving adult PD patients with confirmed COVID-19, using data collected from April 21, 2021, to June 11, 2021. A control PD group was also formed from each PD unit, from patients with similar characteristics but without COVID-19. Patients in the active period of COVID-19 were not included. Data at the end of the first month and within the first 90 days, as well as other outcomes, including mortality, were investigated. <b><i>Results:</i></b> A total of 223 patients (COVID-19 group: 113, control group: 110) from 27 centers were included. The duration of PD in both groups was similar (median [IQR]: 3.0 [1.88–6.0] years and 3.0 [2.0–5.6]), but the patient age in the COVID-19 group was lower than that in the control group (50 [IQR: 40–57] years and 56 [IQR: 46–64] years, <i>p</i> &lt; 0.001). PD characteristics and baseline laboratory data were similar in both groups, except serum albumin and hemoglobin levels on day 28, which were significantly lower in the COVID-19 group. In the COVID-19 group, respiratory symptoms, rehospitalization, lower respiratory tract infection, change in PD modality, UF failure, and hypervolemia were significantly higher on the 28th day. There was no significant difference in laboratory parameters at day 90. Only 1 (0.9%) patient in the COVID-19 group died within 90 days. There was no death in the control group. Respiratory symptoms, malnutrition, and hypervolemia were significantly higher at day 90 in the COVID-19 group. <b><i>Conclusion:</i></b> Mortality in the first 90 days after COVID-19 in PD patients with COVID-19 was not different from the control PD group. However, some patients continued to experience significant problems, especially respiratory system symptoms, malnutrition, and hypervolemia.
DOI: 10.6084/m9.figshare.20592185
title: Neuroanatomy of Adult and Aging Chicken Cornea

description: To provide a complete nerve architecture and main sensory neuropeptide distribution in the chicken cornea. Adult chickens aged 6 months and 4 years were used. The whole cornea was stained with protein gene product (PGP) 9.5 antibody-a pan marker for nerve fibers, calcitonin gene-related peptide (CGRP), and substance P (SP) antibodies; whole-mount images were acquired to build an entire view of corneal innervation. Relative corneal epithelial nerve fiber densities, including subbasal bundles and superficial terminals, were assessed by computer-assisted analysis. An average of about 76.3 ± 5.7 (<i>n</i> = 8 corneas, 4 M/4F) stromal nerve trunks enter the cornea radially and are evenly distributed around the limbus with no significant difference between male and female chickens. The subbasal nerve bundles do not extend in a given direction and, as a result, do not form a vortex in the center of the cornea. Furthermore, the chicken cornea contains more SP-positive nerves than CGRP-positive nerves. It is also shown that aging significantly reduces corneal epithelial nerve density in chickens. This is the first study to provide a complete map of the entire corneal nerves and CGRP and SP sensory neuropeptide distribution in the adult chicken cornea. The findings show chicken corneal innervation has many differences to human and mammal cornea.
DOI: 10.6084/m9.figshare.20440134
title: Younger Age and Albuminuria are Associated with Proliferative Diabetic Retinopathy and Diabetic Macular Edema in the South Indian GeNetics of DiAbeTic Retinopathy (SIGNATR) Study

description: <b><i>Purpose:</i></b> The purpose of the South Indian GeNetics of DiAbeTic Retinopathy (SIGNATR) Study is to identify non-genetic and genetic risk factors associated with diabetic retinopathy (DR). This report examines the non-genetic risk factors for DR in South Indian patients. <b><i>Methods:</i></b> Participants with South Indian ancestry and type 2 diabetes (T2D) were included from two sources: the Sankara Nethralaya Diabetic Retinopathy and Molecular Genetics Study (SN-DREAMS) and prospective recruitment at Sankara Nethralaya affiliates. Fundus photography and optical coherence tomography (OCT) were obtained on participants. Fundus images were graded for DR severity and OCTs were graded for center-involved diabetic macular edema (ciDME). Multivariate analyses were performed using stepwise logistic regression to assess effects of the demographic and clinical factors on proliferative DR (PDR) and DME. <b><i>Results:</i></b> Among the 2941 participants with DR grading, participants with PDR were more likely to be younger [odds ratio (OR)=0.95], men (OR = 1.83), have a longer duration of diabetes (OR = 1.10), have a higher hemoglobin A1c (OR = 1.12), have albuminuria (OR = 5.83), have hypertension (OR = 1.69), have a higher HDL (OR = 1.02) and a lower total cholesterol (OR = 0.99) (all <i>p</i> &lt; 0.05). Among the 483 participants with gradable OCT scans, participants who had ciDME were more likely to be younger (OR = 0.97), men (OR = 2.80), have a longer duration of diabetes (OR = 1.06), have lower triglycerides (OR = 0.99), and have albuminuria (OR = 3.12) (all <i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> Younger age, male sex, longer duration of diabetes, higher HbA1c, and presence of albuminuria were identified as risk factors for PDR and DME in a South Indian population with T2D.
DOI: 10.6084/m9.figshare.20440134.v1
title: Younger Age and Albuminuria are Associated with Proliferative Diabetic Retinopathy and Diabetic Macular Edema in the South Indian GeNetics of DiAbeTic Retinopathy (SIGNATR) Study

description: <b><i>Purpose:</i></b> The purpose of the South Indian GeNetics of DiAbeTic Retinopathy (SIGNATR) Study is to identify non-genetic and genetic risk factors associated with diabetic retinopathy (DR). This report examines the non-genetic risk factors for DR in South Indian patients. <b><i>Methods:</i></b> Participants with South Indian ancestry and type 2 diabetes (T2D) were included from two sources: the Sankara Nethralaya Diabetic Retinopathy and Molecular Genetics Study (SN-DREAMS) and prospective recruitment at Sankara Nethralaya affiliates. Fundus photography and optical coherence tomography (OCT) were obtained on participants. Fundus images were graded for DR severity and OCTs were graded for center-involved diabetic macular edema (ciDME). Multivariate analyses were performed using stepwise logistic regression to assess effects of the demographic and clinical factors on proliferative DR (PDR) and DME. <b><i>Results:</i></b> Among the 2941 participants with DR grading, participants with PDR were more likely to be younger [odds ratio (OR)=0.95], men (OR = 1.83), have a longer duration of diabetes (OR = 1.10), have a higher hemoglobin A1c (OR = 1.12), have albuminuria (OR = 5.83), have hypertension (OR = 1.69), have a higher HDL (OR = 1.02) and a lower total cholesterol (OR = 0.99) (all <i>p</i> &lt; 0.05). Among the 483 participants with gradable OCT scans, participants who had ciDME were more likely to be younger (OR = 0.97), men (OR = 2.80), have a longer duration of diabetes (OR = 1.06), have lower triglycerides (OR = 0.99), and have albuminuria (OR = 3.12) (all <i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> Younger age, male sex, longer duration of diabetes, higher HbA1c, and presence of albuminuria were identified as risk factors for PDR and DME in a South Indian population with T2D.
DOI: 10.6084/m9.figshare.20592185.v1
title: Neuroanatomy of Adult and Aging Chicken Cornea

description: To provide a complete nerve architecture and main sensory neuropeptide distribution in the chicken cornea. Adult chickens aged 6 months and 4 years were used. The whole cornea was stained with protein gene product (PGP) 9.5 antibody-a pan marker for nerve fibers, calcitonin gene-related peptide (CGRP), and substance P (SP) antibodies; whole-mount images were acquired to build an entire view of corneal innervation. Relative corneal epithelial nerve fiber densities, including subbasal bundles and superficial terminals, were assessed by computer-assisted analysis. An average of about 76.3 ± 5.7 (<i>n</i> = 8 corneas, 4 M/4F) stromal nerve trunks enter the cornea radially and are evenly distributed around the limbus with no significant difference between male and female chickens. The subbasal nerve bundles do not extend in a given direction and, as a result, do not form a vortex in the center of the cornea. Furthermore, the chicken cornea contains more SP-positive nerves than CGRP-positive nerves. It is also shown that aging significantly reduces corneal epithelial nerve density in chickens. This is the first study to provide a complete map of the entire corneal nerves and CGRP and SP sensory neuropeptide distribution in the adult chicken cornea. The findings show chicken corneal innervation has many differences to human and mammal cornea.
DOI: 10.6084/m9.figshare.21251976.v1
title: Supplementary Material for: Early Discontinuation of Levothyroxine Treatment Is Safe and Feasible in Extremely Low Birth Weight Infants with Delayed Hyperthyrotropinemia

description: <b><i>Background:</i></b> While recent pieces of evidence suggest that discontinuation of levothyroxine replacement therapy (LRT) earlier than the current guidelines of 3 years is possible, the optimal duration of LRT for delayed hyperthyrotropinemia in extremely low birth weight infants (ELBWIs) remains unknown. <b><i>Objective:</i></b> This study aimed to investigate the feasibility of early discontinuation of LRT for delayed hyperthyrotropinemia in ELBWIs. <b><i>Methods:</i></b> The medical records of 92 ELBWIs who had shown delayed hyperthyrotropinemia, defined as a delayed rise in thyroid-stimulating hormone (TSH) levels to &gt;20 µIU/mL after initial normal TSH level, were retrospectively reviewed to determine whether the duration of LRT affects the short-term outcomes at discharge from neonatal intensive care unit (NICU) and the long-term outcomes at the corrected age (CA) of 2 years. The infants were grouped into: no LRT required group (<i>n</i> = 21), short-term LRT given until the time of NICU discharge – 90 ± 64 (13–211) days group (<i>n</i> = 36), and long-term LRT given – 749 ± 333 (339–1,967) days group (<i>n</i> = 35). <b><i>Results:</i></b> While mortality in the no LRT required group was significantly higher than that in the long-term LRT group, no significant differences were observed in short-term outcomes at discharge from NICU and long-term growth and neurodevelopmental outcomes at CA of 2 years between the short- and long-term LRT groups. <b><i>Conclusions:</i></b> Termination of LRT at around the time of discharge from NICU in well, clinically stable ELBWIs who have delayed hyperthyrotropinemia appears to be safe and feasible and avoids the risk of overtreatment.
DOI: 10.6084/m9.figshare.20417997.v1
title: Supplementary Material for: Prevalence and correlates of overweight and obesity in 12 European Countries in 2017-2018

description: Introduction: Using data from the TackSHS survey, we aim to provide updated estimates on the prevalence and determinants of overweight and obesity in Europe. Methods: A face-to-face survey was conducted in 2017-2018 in 12 European countries (Bulgaria, England, France, Germany, Greece, Ireland, Italy, Latvia, Poland, Portugal, Romania, and Spain). Overall, 10,810 participants, representative in each country of the general adult population, provided information on self-reported height and weight. Results: Almost half of participants (48.1%; 95% confidence interval, CI: 47.2-49.1) reported to be overweight or obese (54.1% in men and 42.5% in women), and 12.6% (95% CI: 12.0-13.2) obese (11.3% in men and 13.8% in women). Obesity prevalence was lowest in Italy (7.5%) and France (8.8%), and highest in Greece (19.7%) and Romania (21.1%). Multilevel logistic random-effects analyses showed that prevalence of obesity was related with higher age and lower level of education and socioeconomic status. As compared to northern European countries, Western and Southern European ones showed a significantly lower obesity prevalence. When compared to a companion study conducted in 2010, Eastern and Northern European countries showed an increased trend in obesity prevalence. Conversely, countries with the lowest obesity prevalence (less than 10%), such as Italy and France, showed a decreased trend. Conclusions: Despite a large heterogeneity across countries, overweight and obesity prevalence estimates in Europe are alarming, with most of the countries reporting obesity prevalence approaching 20% or more, particularly in Eastern and Northern Europe. Since 2010, obesity prevalence increased in most of these countries.
DOI: 10.6084/m9.figshare.20437296
title: Supplementary Material for: Associations of urinary and dietary sodium-to-potassium ratios with albuminuria in community-dwelling Japanese adults: a cross-sectional study

description: Introduction: The urinary sodium-to-potassium ratio is an indicator of dietary sodium intake and has been associated with reduced kidney function. However, less is known about its association with albuminuria, the other key component of chronic kidney disease, in the community-dwelling adult population. We examined the association of the spot urinary sodium-to-potassium ratio with albuminuria and compared spot urinary and dietary sodium-to-potassium ratios. Methods: We quantified the association of the urinary sodium-to-potassium ratio with albuminuria in 6,274 Japanese adults (age, 40–97 years; 50.9% women) based on spot urine samples. We performed linear and logistic regression modeling to account for potential confounders. Elevated albuminuria was defined as a spot urinary albumin-to-creatinine ratio (ACR) ≥ 30 mg/g. We secondarily evaluated the dietary sodium-to-potassium ratio based on a food-frequency questionnaire. Results: The median spot urinary and dietary sodium-to-potassium ratios were 2.70 (interquartile interval, 1.87–3.83) and 1.50 (1.21–1.84), respectively. The median ACR was 11.0 (6.0–24.0) mg/g. In a multivariable linear regression model, the spot urinary sodium-to-potassium ratio (per increment) was significantly associated with the natural logarithm of the ACR (regression coefficient, 0.023 [95% confidence interval [95% CI], 0.007–0.038]). This result was consistent in a multivariable logistic regression model (adjusted odds ratio, 1.08 [95% CI, 1.04–1.12]). The corresponding estimates for the dietary sodium-to-potassium ratio were 0.139 (95% CI, 0.087–0.191) and 1.28 (95% CI, 1.14–1.45), respectively. Conclusions: Both spot urinary and dietary sodium-to-potassium ratios were associated with elevated albuminuria in community-dwelling Japanese adults. Our findings further support the potential usefulness of the spot urinary sodium-to-potassium ratio as an indicator of sodium intake and suggest a link between sodium intake and kidney damage.
DOI: 10.5281/zenodo.6347708
title: Error Identification Strategies for Python Jupyter Notebooks

description: Replication package for the paper "<strong>Error Identification Strategies for Python Jupyter Notebooks</strong>".
DOI: 10.5281/zenodo.6347709
title: Error Identification Strategies for Python Jupyter Notebooks

description: Replication package for the paper "<strong>Error Identification Strategies for Python Jupyter Notebooks</strong>".
DOI: 10.6084/m9.figshare.21252063
title: lo-norm

description: simulation and real application
DOI: 10.6084/m9.figshare.21252063.v1
title: lo-norm

description: simulation and real application