cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12520733.v2
title: Data and code for: Flight muscle power increases with strain amplitude and decreases with cycle frequency in zebra finches (Taeniopygia guttata)

description: Code and data accompanying manuscript submission entitled "Flight muscle power increases with strain amplitude and decreases with cycle frequency in zebra finches (Taeniopygia guttata)" by JW Bahlman, VB Baliga, and DL Altshuler.<br><br>The project uses a muscle work loop technique to examine the limitations of high frequency muscle contraction in the pectoralis muscle of zebra finches. We then compare the efficacy of varying muscle shortening velocity via changes to strain amplitude vs changes to cycle frequency.<br><br><br>The zip file contains all raw data, R code for data analyses and figure creation, and files for the 3D printing of a custom brace used during work loop procedures to keep the bird in place.<br><br>Please unzip the file and consult the README for further details.
DOI: 10.6084/m9.figshare.12520733.v1
title: Data and code for: Flight muscle power increases with strain amplitude and decreases with cycle frequency in zebra finches (Taeniopygia guttata)

description: Code and data accompanying manuscript submission entitled "Flight muscle power increases with strain amplitude and decreases with cycle frequency in zebra finches (Taeniopygia guttata)" by JW Bahlman, VB Baliga, and DL Altshuler.<br><br>The project uses a muscle work loop technique to examine the limitations of high frequency muscle contraction in the pectoralis muscle of zebra finches. We then compare the efficacy of varying muscle shortening velocity via changes to strain amplitude vs changes to cycle frequency.<br><br><br>The zip file contains all raw data, R code for data analyses and figure creation, and files for the 3D printing of a custom brace used during work loop procedures to keep the bird in place.<br><br>Please unzip the file and consult the README for further details.
DOI: 10.15468/adz4z4
title: The Indo-Pacific Amalda (Neogastropoda, Olivoidea, Ancillariidae) revisited with molecular data, with special emphasis on New Caledonia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kantor, Yuri I., Castelin, Magalie, Fedosov, Alexander, Bouchet, Philippe (2020): The Indo-Pacific Amalda (Neogastropoda, Olivoidea, Ancillariidae) revisited with molecular data, with special emphasis on New Caledonia. European Journal of Taxonomy 706: 1-59, DOI: https://doi.org/10.5852/ejt.2020.706
DOI: 10.6084/m9.figshare.12445574
title: cleaned_spectra.csv

description: This data set contains 1365 measurements of rapeseed plants under different conditions of nutritional stress.<br>The plants were grown under controlled conditions in greenhouses, with plants transplanted into hydroponic solutions containing all needed nutrients, which later was replaced by ones containing all nutrients (FULL, FULLP), containing only half the necessary amount of sulphur, phosphorus or nitrogen (Sint, Pint, Nint) or none at all (S0, P0, N0).<br>Measurements have been taken from leaves sprouting before transplantation and being cut just after transplantation (F1), those sprouting before transplantation but growing after transplantation (F3), and those sprouting after transplantation (F5).<br>The number of days after transplantation when the measurements were taken is indicated by the attribute DaS.
DOI: 10.6084/m9.figshare.12445574.v2
title: cleaned_spectra.csv

description: This data set contains 1365 measurements of rapeseed plants under different conditions of nutritional stress.<br>The plants were grown under controlled conditions in greenhouses, with plants transplanted into hydroponic solutions containing all needed nutrients, which later was replaced by ones containing all nutrients (FULL, FULLP), containing only half the necessary amount of sulphur, phosphorus or nitrogen (Sint, Pint, Nint) or none at all (S0, P0, N0).<br>Measurements have been taken from leaves sprouting before transplantation and being cut just after transplantation (F1), those sprouting before transplantation but growing after transplantation (F3), and those sprouting after transplantation (F5).<br>The number of days after transplantation when the measurements were taken is indicated by the attribute DaS.
DOI: 10.6084/m9.figshare.12445574.v1
title: cleaned_spectra.csv

description: This data set contains 1365 measurements of rapeseed plants under different conditions of nutritional stress.<br>The plants were grown under controlled conditions in greenhouses, with plants transplanted into hydroponic solutions containing all needed nutrients, which later was replaced by ones containing all nutrients (FULL, FULLP), containing only half the necessary amount of sulphur, phosphorus or nitrogen (Sint, Pint, Nint) or none at all (S0, P0, N0).<br>Measurements have been taken from leaves sprouting before transplantation and being cut just after transplantation (F1), those sprouting before transplantation but growing after transplantation (F3), and those sprouting after transplantation (F5).<br>The number of days after transplantation when the measurements were taken is indicated by the attribute DaS.
DOI: 10.25345/c5dq9w
title: MassIVE MSV000086055 - CELL-SYSTEMS-D-20-00304 Dataset
title: A proteomic based technology developed for in-depth single-chain only antibody discovery
DOI: 10.6084/m9.figshare.11659233
title: Developing and Validating the Self-Transcendent Emotion Dictionary for Textual Analysis

description: Recent years have seen a growing amount of research effort directed toward what positive media psychologists refer to as self-transcendent emotions, such as awe, admiration, elevation, gratitude, inspiration, and hope. While these emotions are invaluable to promote greater human connectedness, prosociality, and human flourishing, researchers are constrained in terms of analyzing self-transcendent emotions as expressed in spoken and written languages. Drawing upon the word-counting approach of the text analysis paradigm, this project aimed at constructing a dictionary tool—Self-Transcendent Emotion Dictionary (STED)—which can be uploaded into mainstream, text analytic software (e.g., LIWC) to identify and analyze self-transcendent emotions in large corpora. This dictionary tool was then refined and validated via three studies, where individual words were first rated with regard to their fitness into the proposed construct (Step 1), and then used to analyze essays written to reflect corresponding construct (Step 2). Finally, the refined dictionary was applied to examine words used in nearly 4,000 human-coded <i>New York Times</i> articles (Step 3). Results indicated that the final dictionary, consists of 351 lexicons and phrases, does come with acceptable face and construct validity, and possesses reasonable level of external validity and applicability. Despite its notable shortcoming in accounting for the rhetorical techniques ingrained in natural human language, the STED could be instrumental for social scientific inquiry of positive emotions in textual narratives.
DOI: 10.6084/m9.figshare.11659233.v2
title: Developing and Validating the Self-Transcendent Emotion Dictionary for Textual Analysis

description: Recent years have seen a growing amount of research effort directed toward what positive media psychologists refer to as self-transcendent emotions, such as awe, admiration, elevation, gratitude, inspiration, and hope. While these emotions are invaluable to promote greater human connectedness, prosociality, and human flourishing, researchers are constrained in terms of analyzing self-transcendent emotions as expressed in spoken and written languages. Drawing upon the word-counting approach of the text analysis paradigm, this project aimed at constructing a dictionary tool—Self-Transcendent Emotion Dictionary (STED)—which can be uploaded into mainstream, text analytic software (e.g., LIWC) to identify and analyze self-transcendent emotions in large corpora. This dictionary tool was then refined and validated via three studies, where individual words were first rated with regard to their fitness into the proposed construct (Step 1), and then used to analyze essays written to reflect corresponding construct (Step 2). Finally, the refined dictionary was applied to examine words used in nearly 4,000 human-coded <i>New York Times</i> articles (Step 3). Results indicated that the final dictionary, consists of 351 lexicons and phrases, does come with acceptable face and construct validity, and possesses reasonable level of external validity and applicability. Despite its notable shortcoming in accounting for the rhetorical techniques ingrained in natural human language, the STED could be instrumental for social scientific inquiry of positive emotions in textual narratives.
DOI: 10.6084/m9.figshare.12899825
title: R0193_20170927a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4011256
title: OpenAg Forum/Github network visualizations (gephi)

description: It includes the gephi files used to the network visualization of the OpenAg community. Article published: Argenton Freire, R., & Ziggiatti Monteiro, E. (2020). Measuring the development and communication of open design communities: The case of the OpenAg Initiative. <em>First Monday</em>, <em>25</em>(9). https://doi.org/10.5210/fm.v25i9.10527
DOI: 10.5281/zenodo.4011255
title: OpenAg Forum/Github network visualizations (gephi)

description: It includes the gephi files used to the network visualization of the OpenAg community. Article published: Argenton Freire, R., & Ziggiatti Monteiro, E. (2020). Measuring the development and communication of open design communities: The case of the OpenAg Initiative. <em>First Monday</em>, <em>25</em>(9). https://doi.org/10.5210/fm.v25i9.10527
DOI: 10.5281/zenodo.4011236
title: OpenAg Forum/Github Dataset and network visualizations (gephi)

description: It includes the gephi files used to the network visualization of the OpenAg community. Article published: Argenton Freire, R., & Ziggiatti Monteiro, E. (2020). Measuring the development and communication of open design communities: The case of the OpenAg Initiative. <em>First Monday</em>, <em>25</em>(9). https://doi.org/10.5210/fm.v25i9.10527
DOI: 10.5281/zenodo.4011235
title: OpenAg Forum/Github Dataset and network visualizations (gephi)

description: It includes the gephi files used to the network visualization of the OpenAg community. Article published: Argenton Freire, R., & Ziggiatti Monteiro, E. (2020). Measuring the development and communication of open design communities: The case of the OpenAg Initiative. <em>First Monday</em>, <em>25</em>(9). https://doi.org/10.5210/fm.v25i9.10527
DOI: 10.15785/sbgrid/756
title: X-Ray Diffraction data from Streptococcus sanguinis strain SK1 adhesin, source of 6VS7 structure

description: native dataset
DOI: 10.25345/c58x7z
title: MassIVE MSV000086056 - Transient expression of NHP-Glc biosynthetic genes in tomato
title: Experimental Goal: To determine the metabolic profile of tomato leaves when transiently expressing NHP and NHP-Glc biosynthetic enzymes. Methods: Transient expression and SAR assays were performed as previously (Holmes et al., 2019. Science Signaling. 12, eaay3066). Briefly, combinations of Agrobacterium C58C1 pCH32 strains harboring combinations of GFP, FMO1, ALD1, and UGT76B1 were infiltrated into two proximal (bottom, local (L)) leaflets of the third and fourth compound leaves of 4-5-week old tomato plants for 48 h. For metabolic profiling, two proximal and three distal (D) leaflets of the third compound leaf were harvested, lyophilized to dryness, and homogenized using a ball mill (Retsch MM 400) at 25 Hz for 2 min. Samples were resuspended in 20 ul of 80:20 MeOH:H2O per mg dry tissue and incubated at 4C for 10 min. The liquid fraction of each sample was split for LC-MS and GC-MS analysis respectively. Samples for GC-MS analysis were further derivatized with N-methyl-N-(trimethylsilyl)trifluoroacetamide (MSTFA) (Holmes et al., 2019. Science Signaling. 12, eaay3066). NHP-Glc was measured using previously published methods on an Agilent 1260 HPLC coupled to an Agilent 6520 quadrupole time-of-flight electrospray ionization (Q-TOF ESI) mass spectrometer (Chen et al., 2018. PNAS. E4920-E4929). SA and SA-Glc were measured using an Agilent 1290 Infinity II UHPLC coupled to an Agilent 6470 triple quadrupole (QQQ) mass spectrometer. A 1.8 um, 2.1 x 50 mm Zorbax RRHD Eclipse Plus C18 column was used for reverse phase chromatography with mobile phases of A [water with 0.1% formic acid (FA)] and B [acetonitrile (AcN) with 0.1% FA]. The following gradient was used for separation with a flow rate of 0.6 ml/min (percentages indicate percent buffer B): 0-0.2 min (5%), 0.2-4.2 min (5-95%), 4.2-5.2 min (95-100%). The MS was run in negative mode with the following parameters: gas temperature, 250C; gas flow rate, 12 l/min; nebulizer, 25 psig. SA was measured using monitored transitions with the following parameters: Precursor ion, 137.0239; product ions, 93 and 65.1; dwell, 150 ms; fragmentor voltage, 158 V; collision energy, 20 V and 32 V respectively, cell accelerator voltage, 4 V. SA-Glc was measured using monitored transitions with the following parameters: Precursor ion, 299.0767; product ions, 137 and 93; dwell, 150 ms; fragmentor voltage, 158 V; collision energy, 5 V and 20 V respectively, cell accelerator voltage, 4 V. TMS-derivatized samples were measured for Pip and NHP using published methods on an Agilent 7820A gas chromatograph coupled to an Agilent 5977B mass spectrometer (Holmes et al., 2019. Science Signaling. 12, eaay3066).
DOI: 10.15785/sbgrid/754
title: X-Ray Diffraction data from Streptococcus sanguinis strain SK1 adhesin, source of 6VU6 structure

description: native dataset
DOI: 10.6084/m9.figshare.12899825.v1
title: R0193_20170927a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.15785/sbgrid/748
title: X-Ray Diffraction data from Human SDHA-SDHAF2 complex, source of 6VAX structure

description: Native dataset at 2.4 A resolution.
description: This dataset was indexed in space group C121. The dataset contains 360 frames which were processed with HKL2000 at 2.4A resolution.
DOI: 10.5281/zenodo.4011267
title: Embeddings of KG-COVID-19 knowledge graph (Aug 12 build), produced using node2vec, skipgram model, p=q=1, walk length = 100, num walks = 20

description: Embeddings of KG-COVID-19 knowledge graph (Aug 12 build), produced using Embiggen, node2vec, skipgram model, p=q=1, walk length = 100, num walks = 20
DOI: 10.5281/zenodo.4011266
title: Embeddings of KG-COVID-19 knowledge graph (Aug 12 build), produced using node2vec, skipgram model, p=q=1, walk length = 100, num walks = 20

description: Embeddings of KG-COVID-19 knowledge graph (Aug 12 build), produced using Embiggen, node2vec, skipgram model, p=q=1, walk length = 100, num walks = 20
DOI: 10.15785/sbgrid/755
title: X-Ray Diffraction data from Streptococcus sanguinis strain SK1 with 3sln, source of 6VT2 structure

description: native dataset
DOI: 10.5517/ccdc.csd.cc21rrm6
title: CCDC 1899668: Experimental Crystal Structure Determination

description: Related Article: Jesica Paola Rada, Jéremy Forté, Geoffrey Gontard, Vincent Corcé, Michèle Salmain, Nicolás A. Rey|2020|ChemBioChem|21|2474|doi:10.1002/cbic.202000122
DOI: 10.5517/ccdc.csd.cc21rrrb
title: CCDC 1899672: Experimental Crystal Structure Determination

description: Related Article: Jesica Paola Rada, Jéremy Forté, Geoffrey Gontard, Vincent Corcé, Michèle Salmain, Nicolás A. Rey|2020|ChemBioChem|21|2474|doi:10.1002/cbic.202000122
DOI: 10.5517/ccdc.csd.cc2265j0
title: CCDC 1912561: Experimental Crystal Structure Determination

description: Related Article: Jesica Paola Rada, Jéremy Forté, Geoffrey Gontard, Vincent Corcé, Michèle Salmain, Nicolás A. Rey|2020|ChemBioChem|21|2474|doi:10.1002/cbic.202000122
DOI: 10.5517/ccdc.csd.cc2265k1
title: CCDC 1912562: Experimental Crystal Structure Determination

description: Related Article: Jesica Paola Rada, Jéremy Forté, Geoffrey Gontard, Vincent Corcé, Michèle Salmain, Nicolás A. Rey|2020|ChemBioChem|21|2474|doi:10.1002/cbic.202000122
DOI: 10.25345/c5575c
title: MassIVE MSV000086057 - Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation
title: In this paper, using the Xenopus dorsal gastrula mesoderm, we explored the localization dynamics of several actin-regulatory proteins, defined the in vivo interactome of Cofilin2 (CFL2), and explored the function of Twinfilin1 in convergent extension. Specifically, this APMS dataset is comprised of "prey" protein interactions determined to associate with a CFL2-GFP "bait."
DOI: 10.5519/qd.wr4jlojc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (20 records)
DOI: 10.6084/m9.figshare.12904229
title: Ajustes programa pruebas sensoriales.xlsx

description: una descripción de apoyo en análisis sensorial
DOI: 10.6084/m9.figshare.12904229.v1
title: Ajustes programa pruebas sensoriales.xlsx

description: una descripción de apoyo en análisis sensorial
DOI: 10.6084/m9.figshare.12899801
title: Supplementary Material 1_TABLE.docx

description: Table included as supplementary material in the article entitled "<i>Scale for Evaluating Food and Nutrition Education Practices in Primary Health Care</i>". The table describes the distribution of the raters’ responses according to the scale item and the video assessed. São Paulo, 2018.
DOI: 10.6084/m9.figshare.12904373
title: S.Table 4

description: <b>Supplementary Table 4. </b>List of genes involved in cardiac sturcture and function that are differentailly expressed in Nebl<sup>+/+ </sup>and Nebl<sup>ex3-/ex3-</sup> mice at sedentary or after stress.
DOI: 10.6084/m9.figshare.12904373.v1
title: S.Table 4

description: <b>Supplementary Table 4. </b>List of genes involved in cardiac sturcture and function that are differentailly expressed in Nebl<sup>+/+ </sup>and Nebl<sup>ex3-/ex3-</sup> mice at sedentary or after stress.
DOI: 10.6084/m9.figshare.3761562.v1592
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5519/qd.q3tsj9gq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1442 records)
DOI: 10.6084/m9.figshare.12904409
title: Scale for assessing the adequacy of the Dietary Guidelines for the Brazilian Population (Brazilian Dietary Guidelines) approach by health professionals in Primary Health Care

description: Scale and fill-out manual cited in the study (Reis LC and Jaime P) entitled <i>Scale for Evaluating Food and Nutrition Education Practices in Primary Health Care</i>.The article describes the process of development, validation and the test of reliability of the mentioned instrument.
DOI: 10.6084/m9.figshare.12904409.v1
title: Scale for assessing the adequacy of the Dietary Guidelines for the Brazilian Population (Brazilian Dietary Guidelines) approach by health professionals in Primary Health Care

description: Scale and fill-out manual cited in the study (Reis LC and Jaime P) entitled <i>Scale for Evaluating Food and Nutrition Education Practices in Primary Health Care</i>.The article describes the process of development, validation and the test of reliability of the mentioned instrument.
DOI: 10.18119/n94c7g
title: Candidate genes for Intellectual Disability and Global Development delay with brain expression and conserved interactions between mammals
DOI: 10.18119/n90k6x
title: Interaction network of proteins related to Intellectual Disability and Global Development delay
DOI: 10.6084/m9.figshare.12698456
title: Muller Lab_John Asara_Metabolon Inc data.xlsx

description: The excel sheet contains metabolomics data obtained from primary human tumors and tumor xenografts from two different metabolomics platform, John Asara metabolomics Core at BIDMC and Metabolon Inc. The data presented in the commentary (https://osf.io/kyab5) are highlighted in the sheet.
DOI: 10.6084/m9.figshare.12698456.v1
title: Muller Lab_John Asara_Metabolon Inc data.xlsx

description: The excel sheet contains metabolomics data obtained from primary human tumors and tumor xenografts from two different metabolomics platform, John Asara metabolomics Core at BIDMC and Metabolon Inc. The data presented in the commentary (https://osf.io/kyab5) are highlighted in the sheet.
DOI: 10.3886/e119446v25
title: COVID-19 US State Policy Database

description: Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini
description: State policies. Smallest Geographic Unit: State
DOI: 10.3886/e120908
title: Use of Internet of things for Health French repondants

description: As part of this study, we have studied the impact of user trust on the engagement in the use of the internet of things for health and also the mediating effect of the desire for self-development and perceived autonomy in this relationship
DOI: 10.3886/e120908v1
title: Use of Internet of things for Health French repondants

description: As part of this study, we have studied the impact of user trust on the engagement in the use of the internet of things for health and also the mediating effect of the desire for self-development and perceived autonomy in this relationship