cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25392/leicester.data.12435209
title: Voltammetry, food intake and body weight data (Protein restriciton and dopamine release project)

description: Raw data from the FSCV and protein restriction project.<br>1- Adult and adolescent rats were exposed to either control or protein restricted diet during 2 weeks.-&gt; body weight and food intake measures are available in FSCV_Weight&Food intake.xlsx<br>2- At the end of the diet exposure, ex vivo voltammetry recordings were performed on brain slices containing the nucleus accumbens or the dorsal striatum to measure dopamine release induced by electrical stimulation.-&gt; electrodes calibration is available in FSCV_Electrode calibration.txt-&gt; individual data for each age, diet condition, region, animal and slice are organised in different folders explicitly named.-&gt; complete dataset for each stimulation can be open using TarHeel CV software.-&gt; each data (current versus time) is also available as .txt in each folder (one .txt file for one stimulation response).<br>Data have been used in the following article "Age dependent effects of protein restriction on dopamine release" available on bioRxiv (https://doi.org/10.1101/2020.04.09.033985) and currently in revision in Neuropsychopharmacology.
DOI: 10.6084/m9.figshare.12435248
title: Datasets from evaluating insecticide resistance across African districts to aid malaria control decisions

description: The data loaded here were generated by a published geostatistical ensemble model to bridge gaps in the available surveillance data and consider the likelihood that resistance exceeds recommended thresholds. <br><br>We provide spatial data files for: <br>1) district-level weighted means for pyrethroid resistance, <br>2) the maximum pyrethroid resistance value (minimum mortality value) predicted within each district, <br>3) the probability that pyrethroid resistance exceeds the World Health Organization (WHO) threshold for susceptibility, <br>4) the probability that pyrethroid resistance exceeds the World Health Organization (WHO) threshold for confirmed resistance, and <br>5) the probability that pyrethroid resistance falls within the World Health Organization (WHO) range for deployment of PBO-treated nets. <br>These data are all for deltametrin resistance in <i>Anopheles gambiae</i> s.l. in 2017. All of the above files are in shapefile format.<br><br>We also provide spatial data on the overlapping presence of <i>Anopheles gambiae</i> s.l. and the other dominant vector in this region, <i>Anopheles funestus. </i>These files are in GeoTIFF format.<br>All of the above data can be visualised, processed and analysed in a range of geographical information system packages (e.g. ArcGIS and QGIS) or spatial data packages in R (http://cran.r-project.org/web/views/Spatial.html). <br><br>Further information is given in the article that describes this work: Moyes, CL <i>et al</i>. (2020) <b>Evaluating insecticide resistance across African districts to aid malaria control decisions</b>. <i>Proceedings of the National Academy of Science, <b>117</b>, </i>www.pnas.org/cgi/doi/10.1073/pnas.2006781117.
DOI: 10.6084/m9.figshare.12435377.v1
title: Table S4 from Adaptive zones shape the magnitude of premating reproductive isolation in <i>Timema</i> stick insects

description: Transition rate models support. Each model was fit to 1000 trees from the posterior distribution of time calibrated trees (from Riesch et al. 2017) using two methods: joint and marginal and five different root probabilities: same probability for all host genera (‘flat’), root probabilities following Yang (2006) (‘yang’), root probabilities estimated following Maddison et al. (2007) and FitzJohn et al. (2009) (‘madd’), same probability for all conifer host genera (‘con’), and same probability for all flowering plant genera (‘flo’).
DOI: 10.25392/leicester.data.12435209.v1
title: Voltammetry, food intake and body weight data (Protein restriciton and dopamine release project)

description: Raw data from the FSCV and protein restriction project.<br>1- Adult and adolescent rats were exposed to either control or protein restricted diet during 2 weeks.-&gt; body weight and food intake measures are available in FSCV_Weight&Food intake.xlsx<br>2- At the end of the diet exposure, ex vivo voltammetry recordings were performed on brain slices containing the nucleus accumbens or the dorsal striatum to measure dopamine release induced by electrical stimulation.-&gt; electrodes calibration is available in FSCV_Electrode calibration.txt-&gt; individual data for each age, diet condition, region, animal and slice are organised in different folders explicitly named.-&gt; complete dataset for each stimulation can be open using TarHeel CV software.-&gt; each data (current versus time) is also available as .txt in each folder (one .txt file for one stimulation response).<br>Data have been used in the following article "Age dependent effects of protein restriction on dopamine release" available on bioRxiv (https://doi.org/10.1101/2020.04.09.033985) and currently in revision in Neuropsychopharmacology.
DOI: 10.6084/m9.figshare.12435248.v1
title: Datasets from evaluating insecticide resistance across African districts to aid malaria control decisions

description: The data loaded here were generated by a published geostatistical ensemble model to bridge gaps in the available surveillance data and consider the likelihood that resistance exceeds recommended thresholds. <br><br>We provide spatial data files for: <br>1) district-level weighted means for pyrethroid resistance, <br>2) the maximum pyrethroid resistance value (minimum mortality value) predicted within each district, <br>3) the probability that pyrethroid resistance exceeds the World Health Organization (WHO) threshold for susceptibility, <br>4) the probability that pyrethroid resistance exceeds the World Health Organization (WHO) threshold for confirmed resistance, and <br>5) the probability that pyrethroid resistance falls within the World Health Organization (WHO) range for deployment of PBO-treated nets. <br>These data are all for deltametrin resistance in <i>Anopheles gambiae</i> s.l. in 2017. All of the above files are in shapefile format.<br><br>We also provide spatial data on the overlapping presence of <i>Anopheles gambiae</i> s.l. and the other dominant vector in this region, <i>Anopheles funestus. </i>These files are in GeoTIFF format.<br>All of the above data can be visualised, processed and analysed in a range of geographical information system packages (e.g. ArcGIS and QGIS) or spatial data packages in R (http://cran.r-project.org/web/views/Spatial.html). <br><br>Further information is given in the article describing this work: https://www.medrxiv.org/content/10.1101/2020.04.01.20049593v1 [to be replaced by the peer-reviewed article once published].<br>
DOI: 10.6084/m9.figshare.12435377.v2
title: Table S2 from Adaptive zones shape the magnitude of premating reproductive isolation in <i>Timema</i> stick insects

description: Host preference experiments. See Table S1 for correspondence between host plant codes and host plant genera.
DOI: 10.6084/m9.figshare.12435077
title: Subjective ratings of the concreteness, valence, and crosslingual similarity (with Dutch) of two-word English expressions

description: These data are described in: S Lindstromberg & J Eyckmans. The retrievability of L2 English multi-word items in a context of strongly form-focused exposure: What matters? Studies in Second Language Acquisition. Accepted 31 May, 2020. The data were collected for an investigation of the effects of a number of pedagogical and lexical variables on the memorability of the forms of two-word English expressions of miscellaneous syntactic structure. The data consist of ratings of Concreteness, Valence, and Similarity (i.e., cognateness and congruence between L1 Dutch and L2 English). The first five columns relate to Concreteness; the next five to Valence; and the last four to Similarity. As detailed in the article mentioned above, it was possible to validate the the ratings of Concreteness and Similarity owing to modest overlapping coverage with existing databases, namely:## Brysbaert, M, Warriner, A., & Kuperman, V. (2014). Concreteness ratings for 40,000 generally known English word lemmas. Behavior Research Methods, 46, 904– 11. https://doi.org/10.3758/s13428-013-0403-5## Warriner A., Kuperman, V., & Brysbaert, M. (2013). Norms of valence, arousal, and dominance for 13,915 English lemmas. Behavior Research Methods, 45, 1191–1207. https://doi.org/10.3758/s13428-012-0314-x For all three sets of ratings indicators of internal reliability are good:Concreteness: Mean split-half r(5000) = .93; Spearman-Brown corrected reliability = .96; SD = 0.11. Valence: split.h r = .95, SB corr reliability = .98; SD = 0.08; Similarity: split.h r = .95, SB corr reliability = .98; SD = 0.10 We used the R function 'splithalf.r' in the package 'multicon' (Sherman & Serfas, 2011) to calculate the mean of 5000 split-half correlations across the ratings of all raters, with the split randomly chosen each time.## Sherman, R., & Serfas, D. (2011). multicon (Multivariate constructs), Version 1.6. http://127.0.0.1:13752/library/multicon/html/multicon-package.html<br>
DOI: 10.6084/m9.figshare.12435377.v3
title: Table S4 from Adaptive zones shape the magnitude of premating reproductive isolation in <i>Timema</i> stick insects

description: Transition rate models support. Each model was fit to 1000 trees from the posterior distribution of time calibrated trees (from Riesch et al. 2017) using two methods: joint and marginal and five different root probabilities: same probability for all host genera (‘flat’), root probabilities following Yang (2006) (‘yang’), root probabilities estimated following Maddison et al. (2007) and FitzJohn et al. (2009) (‘madd’), same probability for all conifer host genera (‘con’), and same probability for all flowering plant genera (‘flo’).
DOI: 10.6084/m9.figshare.12435005
title: Seventeen Unrecorded Species from Gayasan National Park in Korea

description: Macrofungi play important roles in forest ecology as wood decayers, symbionts, and pathogens of living trees. For the effective forest management, it is imperative to have a comprehensive overview of macrofungi diversity in specific areas. As a part of the National Institute of Biological Resources projects for discovering indigenous fungi in Korea, we collected macrofungi in Gayasan National Park from 2017 to 2018. These specimens were identified based on morphological characteristics and sequence analysis of internal transcribed spacer (ITS) or the nuclear large subunit rRNA (LSU) region. We discovered 17 macrofungi new to Korea: <i>Butyrea japonica</i>, <i>Ceriporia nanlingensis</i>, <i>Coltricia weii</i>, <i>Coltriciella subglobosa, Crepidotus crocophyllus, Cylindrobasidium laeve, Fulvoderma scaurum, Laetiporus cremeiporus, Lentinellus castoreus, Leucogyrophana mollusca, Marasmius insolitus, Nidularia deformis, Phaeophlebiopsis peniophoroides, Phanerochaete angustocystidiata, Phlebiopsis pilatii, Postia coeruleivirens,</i> and <i>Tengioboletus fujianensis</i>. We described their detailed morphological characteristics.
DOI: 10.6084/m9.figshare.12435005.v1
title: Seventeen Unrecorded Species from Gayasan National Park in Korea

description: Macrofungi play important roles in forest ecology as wood decayers, symbionts, and pathogens of living trees. For the effective forest management, it is imperative to have a comprehensive overview of macrofungi diversity in specific areas. As a part of the National Institute of Biological Resources projects for discovering indigenous fungi in Korea, we collected macrofungi in Gayasan National Park from 2017 to 2018. These specimens were identified based on morphological characteristics and sequence analysis of internal transcribed spacer (ITS) or the nuclear large subunit rRNA (LSU) region. We discovered 17 macrofungi new to Korea: <i>Butyrea japonica</i>, <i>Ceriporia nanlingensis</i>, <i>Coltricia weii</i>, <i>Coltriciella subglobosa, Crepidotus crocophyllus, Cylindrobasidium laeve, Fulvoderma scaurum, Laetiporus cremeiporus, Lentinellus castoreus, Leucogyrophana mollusca, Marasmius insolitus, Nidularia deformis, Phaeophlebiopsis peniophoroides, Phanerochaete angustocystidiata, Phlebiopsis pilatii, Postia coeruleivirens,</i> and <i>Tengioboletus fujianensis</i>. We described their detailed morphological characteristics.
DOI: 10.6084/m9.figshare.12434762
title: INSR IP LC-MSMS RAW files time 15 mins

description: INSR IP binding proteins detected by LC-MSMS after stimulation with insulin for 15 min
DOI: 10.6084/m9.figshare.12435377.v4
title: Table S5 from Adaptive zones shape the magnitude of premating reproductive isolation in <i>Timema</i> stick insects

description: Transition rate estimates for all models (methods and root probabilities as in Table S4).
DOI: 10.6084/m9.figshare.12434735
title: Example

description: Just an example
DOI: 10.6084/m9.figshare.12434762.v2
title: INSR IP LC-MSMS RAW files time 15 mins

description: INSR IP binding proteins detected by LC-MSMS after stimulation with insulin for 15 min
DOI: 10.6084/m9.figshare.12435377.v6
title: Table S1 from Adaptive zones shape the magnitude of premating reproductive isolation in <i>Timema</i> stick insects

description: Populations used in this work for transition rate analyses and host preference experiments.
DOI: 10.6084/m9.figshare.12434735.v2
title: Operational Calibration

description: This is code and experimental results for paper: Operational Calibration: Debugging Confidence Errors for DNNs in the Field.
DOI: 10.6084/m9.figshare.12434762.v1
title: INSR IP LC-MSMS RAW files time 15 mins

description: INSR IP binding proteins detected by LC-MSMS after stimulation with insulin for 15 min
DOI: 10.6084/m9.figshare.12434735.v1
title: Operational Calibration

description: This is code and experimental results for paper: Operational Calibration: Debugging Confidence Errors for DNNs in the Field.
DOI: 10.6084/m9.figshare.12434573
title: Supplementary Material for: Alexa, What Are You? Exploring Primary School Children’s Ontological Perceptions of Digital Voice Assistants in Open Interactions

description: Today’s children grow up in an environment that is increasingly characterized by digital voice assistants (DVAs), such as Alexa, Siri, or the Google Assistant. This paper argues that any attempt to investigate children’s interactions with, and perceptions of, DVAs should be based on the theoretical grounds of an ontological framework that considers children’s genuine understanding of what it means to be human and what it means to be a machine. Based on focus groups and a gamified data collection design, our empirical inquiry applied qualitative methods to explore primary school children’s (<i>n =</i>27, age range: 6–10 years, average age: 8.6 years) open interactions with DVAs. In particular, our focus was on how DVAs were embedded in children’s general ontological belief system, and how children interpreted certain aspects of DVAs’ interactive capabilities as being genuinely humanoid or non-humanoid. On the one hand, our findings suggest that children’s interactions with DVAs might be more an end in itself than a means to an end, meaning that children primarily interact with DVAs for the sake of engaging excitement instead of using the devices’ utilitarian functionalities. On the other hand, we found that children in our sample held firm ontological beliefs about the distinct nature of humans and machines, whilst interpreting certain aspects of DVAs’ interactive capabilities as being genuinely humanoid (e.g., non-responsiveness, delayed responses, inaccuracy) and non-humanoid (e.g., permanent responsiveness, promptness, accuracy, limited conversational capacities, lack of common sense, standardized responses) at the same time.
DOI: 10.6084/m9.figshare.12434465
title: Supplementary Material for: Geographic Variations in Cutaneous Melanoma Distribution in the Russian Federation

description: <b><i>Background:</i></b> Cutaneous melanoma (CM) incidence has been increasing around the world. The goal of this study is to describe geographic trends in incidence and mortality of CM in Russia between 2001 and 2017. <b><i>Methods:</i></b> To achieve this we used geo-informatic technique (mapping) and descriptive statistical analysis. Additionally, we studied the associations between ethnicity, geographic latitude/longitude, and CM incidence/mortality rates. We retrospectively analyzed the data from the Moscow Oncology Research Institute, Ministry of Health of the Russian Federation, for the period of the study. Routine methods of descriptive epidemiology were used to study incidence and mortality rates by age groups, years, and jurisdictions (i.e., Federal Districts and Federal Subjects of Russia). <b><i>Results:</i></b> In total, 141,597 patients were diagnosed with melanoma in Russia over the period 2001–2017, of whom 62% were women. The overall age-standardized incidence and mortality rates were 4.27/100,000 and 1.62/100,000, respectively. Geographic mapping revealed north-to-south and east-to-west gradients. As the study was fully descriptive, retrospective, and based on official statistical reports, detailed characteristics of clinical forms, anatomic sites, Breslow depth, and treatments could not be analyzed. <b><i>Conclusions:</i></b> This study outlined the burden of melanoma in the Russian Federation, and the trends were similar to those observed in countries with similar latitudes and skin phenotype. The importance of the skin color gradient and recreational/cultural practices were some of the most important risk factors highlighted in this study for the development of melanoma in Russia.
DOI: 10.6084/m9.figshare.12434462
title: Supplementary Table 1.xlsx

description: Supplementary Table 1
DOI: 10.6084/m9.figshare.12434462.v1
title: Supplementary Table 1.xlsx

description: Supplementary Table 1
DOI: 10.6084/m9.figshare.12434054
title: Dataset on assessment of thermodynamic feasibility of a variety of ketone to alcohol transformations suited for biocatalysis

description: Thermodynamics governs the feasibility of reactions, while chemical kinetics provide information on how rapid a reaction proceeds in the forward direction. Setting up new metabolic pathways or reactions is the core capability of metabolic engineering and biocatalysis research. One of the important tools that provide information on the feasibility of reactions is thermodynamic analysis through calculating the Gibbs free energy of reaction. In particular, only thermodynamically feasible reactions would be considered further. However, reactions that are thermodynamically feasible may still encounter a large activation energy trap which requires high temperature or a catalyst to facilitate forward reaction. This dataset provides the thermodynamic feasibility analysis for the transformation of ketones to alcohols for a variety of ketones that may be of use in the biocatalytic industry. Data are presented in the form of an Excel spreadsheet, and should be a good reference for researchers in biocatalysis.
DOI: 10.6084/m9.figshare.12433799
title: Leaf elongation rate under water deficit condition in perennial ryegrass

description: Phenotypic response to water deficit, leaf growth parameters<br>
DOI: 10.6084/m9.figshare.12433793
title: LAI and reflectance 2017 raw data.xlsx

description: RGB reflectance values and LAI for NIFA CARE 2017 plots
DOI: 10.6084/m9.figshare.12433793.v2
title: LAI and reflectance 2017 raw data.xlsx

description: RGB reflectance values and LAI for NIFA CARE 2017 plots
DOI: 10.6084/m9.figshare.12433715
title: GBS SNP calls for 164 perennial ryegrass genotypes

description: GBS libraries were prepared using PstI restriction enzyme.
DOI: 10.6084/m9.figshare.12433823.v1
title: Plastic Metadata.xlsx

description: This Excel file has detailed information about the sampling done between the 18<sup>th</sup> of September 2018 and 10<sup>th</sup> of March 2019 during 4 voyages in Australian waters and about the plastic debris found during the sampling.
DOI: 10.6084/m9.figshare.12433667
title: FuzzyCatch.zip

description: We provide ExAssist, a code recommendation tool for exception handling. ExAssist can predict what types of exception could occur in a given piece of code and recommend proper exception handling code for such exceptions. The tool could be used by programmers when programming or other researchers in exception handling.We provide a dataset of 750 exception related bugs and fixes manually curated from 21 mobile apps. By providing real-world exception-handling bugs and fixes, we hope to provide the research community a corpus of knowledge that will leverage and accelerate further research in exception handling.
DOI: 10.6084/m9.figshare.12433793.v1
title: LAI and reflectance 2017 raw data.xlsx

description: RGB reflectance values and LAI for NIFA CARE 2017 plots
DOI: 10.6084/m9.figshare.12433799.v1
title: Leaf elongation rate under water deficit condition in perennial ryegrass

description: Phenotypic response to water deficit, leaf growth parameters<br>
DOI: 10.6084/m9.figshare.12433667.v1
title: FuzzyCatch.zip

description: We provide ExAssist, a code recommendation tool for exception handling. ExAssist can predict what types of exception could occur in a given piece of code and recommend proper exception handling code for such exceptions. The tool could be used by programmers when programming or other researchers in exception handling.We provide a dataset of 750 exception related bugs and fixes manually curated from 21 mobile apps. By providing real-world exception-handling bugs and fixes, we hope to provide the research community a corpus of knowledge that will leverage and accelerate further research in exception handling.
DOI: 10.6084/m9.figshare.12433715.v1
title: Ler_20200518.hmp.txt

description: GBS SNP calls for 164 perennial ryegrass genotypes. GBS libraries were prepared using PstI restriction enzyme.
DOI: 10.6084/m9.figshare.12433799.v2
title: Leaf elongation rate under water deficit condition in perennial ryegrass

description: Phenotypic response to water deficit, leaf growth parameters<br>
DOI: 10.6084/m9.figshare.12433715.v2
title: GBS SNP calls for 164 perennial ryegrass genotypes

description: GBS libraries were prepared using PstI restriction enzyme.
DOI: 10.6084/m9.figshare.12433181
title: URL10_Supervised_Visualization

description: Supervised learning embeddings (penultimate layer, pool5) for 7,000 annotated RBCs
DOI: 10.6084/m9.figshare.12433226
title: URL11_WeaklySupervised_Visualization

description: Weakly supervised learning embeddings (intermediate layer, Res4a_ReLU) for 7,000 annotated RBCs
DOI: 10.6084/m9.figshare.12433007
title: A More Important Role for the Ozone-S(IV) Oxidation Pathway due to Decreasing Acidity in Clouds.xlsx

description: In this study, a multi-year period observation campaign of clouds at the summit of Mt. Tai was conducted. The chemical compositions of cloud water samples were measured and the S(IV) oxidation rates in cloud were analyzed. This study highlights the long-term characteristics and variation of chemical species in cloud at Mt. Tai. The high ambient O<sub>3</sub> and the increase of aqueous phase pH made O<sub>3</sub> pathway dominant the S(IV) oxidation in cloud at Mt. Tai.
DOI: 10.6084/m9.figshare.12433007.v1
title: A More Important Role for the Ozone-S(IV) Oxidation Pathway due to Decreasing Acidity in Clouds.xlsx

description: In this study, a multi-year period observation campaign of clouds at the summit of Mt. Tai was conducted. The chemical compositions of cloud water samples were measured and the S(IV) oxidation rates in cloud were analyzed. This study highlights the long-term characteristics and variation of chemical species in cloud at Mt. Tai. The high ambient O<sub>3</sub> and the increase of aqueous phase pH made O<sub>3</sub> pathway dominant the S(IV) oxidation in cloud at Mt. Tai.