cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.01757
title: Chronic blue light-emitting diode exposure harvests gut dysbiosis related to cholesterol dysregulation
title: Chronic blue light-emitting diode exposure harvests gut dysbiosis related to cholesterol dysregulation

description: Mounting evidences have illuminated that gut microbiota, circadian rhythm, and metabolic homeostasis are tightly co-evolved. Circadian disruption consequently results in metabolic disorders. The present study explored the effects of chronic LED lighting on gut microbiota focusing on associated lipid metabolism. Male C57BL/6 mice were exposed to blue or white LED lighting for 44 weeks at ZT13.5-14. High irradiance of blue LED lighting specifically reduced alpha diversity at both 27 and 44 weeks. After 44 weeks, low, but not high, irradiance of blue LED lighting increased serum TCHO, but not TG. The ratio of beneficial to harmful bacteria deduced from 6 bacteria intersected between circadian regulation and cholesterol metabolism-related microbes was decreased at low, but increased at high irradiance. This ratio was negatively correlated with serum TCHO, but positively correlated with bile acid biosynthesis. Chronic blue LED lighting could harvest gut dysbiosis and specifically dysregulate cholesterol-related metabolism without any confounding factors.
description: Mounting evidences have illuminated that gut microbiota, circadian rhythm, and metabolic homeostasis are tightly co-evolved. Circadian disruption consequently results in metabolic disorders. The present study explored the effects of chronic LED lighting on gut microbiota focusing on associated lipid metabolism. Male C57BL/6 mice were exposed to blue or white LED lighting for 44 weeks at ZT13.5-14. High irradiance of blue LED lighting specifically reduced alpha diversity at both 27 and 44 weeks. After 44 weeks, low, but not high, irradiance of blue LED lighting increased serum TCHO, but not TG. The ratio of beneficial to harmful bacteria deduced from 6 bacteria intersected between circadian regulation and cholesterol metabolism-related microbes was decreased at low, but increased at high irradiance. This ratio was negatively correlated with serum TCHO, but positively correlated with bile acid biosynthesis. Chronic blue LED lighting could harvest gut dysbiosis and specifically dysregulate cholesterol-related metabolism without any confounding factors.
DOI: 10.15468/dl.tsh7vq
title: Occurrence Download

description: A dataset containing 214297 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marie-Victorin Herbarium (MT) - Plantes vasculaires"
 ]
}

 The dataset includes 214297 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001297-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfb9my
title: Occurrence Download

description: A dataset containing 214179 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Comptages Wetlands, dénombrements des oiseaux d'eau à la mi-janvier en France métropolitaine-Comptages Wetlands, dénombrements des Oiseaux d'eau à la mi-janvier en France métropolitaine"
 ]
}

 The dataset includes 214179 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001296-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.01938
title: Spatiotemporal imaging of charge transfer in photocatalyst particles
title: Spatiotemporal imaging of charge transfer in photocatalyst particles

description: This repository contains data necessary to reproduce figures and results from the associated manuscript. Files included contain the sorted and classified documents of Main Figures and Extended Data Figures with images in png format and source data in Excel format.
description: This repository contains data necessary to reproduce figures and results from the associated manuscript. Files included contain the sorted and classified documents of Main Figures and Extended Data Figures with images in png format and source data in Excel format.
DOI: 10.57760/sciencedb.01953
title: ECRG4 IN ACUTE OTITIS MEDIA
title: ECRG4 IN ACUTE OTITIS MEDIA

description: Two datasets are provided for murine genes where acute otitis media was induced by inoculation of middle ear with nontyoeable Haemophilus influenzae. First data set represents the mean single-cell log2 expression levels for Ecrg4 over the complete time course of otitis media (0h, 1d, 2d, 3d, 5d, 7d), and matches expression illustrated graphically in Kurabi et al., 2022. Second data set consists of raw gene array expression values from C57 WT and Ecrg4 knockout mice at 0h, 6h and 48h post bacterial inoculation. The relative changes in mRNA abundance were compared between the two groups in order to highlight genes that were differentially regulated following induction of infection (Table 5 and 6 in paper).
description: Two datasets are provided for murine genes where acute otitis media was induced by inoculation of middle ear with nontyoeable Haemophilus influenzae. First data set represents the mean single-cell log2 expression levels for Ecrg4 over the complete time course of otitis media (0h, 1d, 2d, 3d, 5d, 7d), and matches expression illustrated graphically in Kurabi et al., 2022. Second data set consists of raw gene array expression values from C57 WT and Ecrg4 knockout mice at 0h, 6h and 48h post bacterial inoculation. The relative changes in mRNA abundance were compared between the two groups in order to highlight genes that were differentially regulated following induction of infection (Table 5 and 6 in paper).
DOI: 10.57760/sciencedb.j00001.00466
title: Remote sensing images dataset of Lanzhou Botanical Garden with a UAV (2021)
title: 2021年兰州植物园无人机遥感影像数据集

description: This dataset is based on aerial survey data of Lanzhou Botanical Garden (36°7′28.7"–36°7′27.9"N, 103°43′1"–103°42′23.9"E) from March 1, 2021 to December 30, 2021, and after Agisoft Photoscan splicing, ArcGIS cropped to obtain the DOM of the area. The DOM are registered by ENVI, and then vegetation indices are calculated. During the data collection process, the drone conducted 72 aerial surveys, and a total of 15696 images were taken. These images have a resolution of 5 cm. This dataset includes a total of 72 data file packages, each of which is named after a date, and the package contains the DOM, ExG, ExG and GLI data of the day, with a total of 864 files and 95GB of data. DOM files are in TIF format, and vegetation index files are in ENVI format. Affected by the novel coronavirus epidemic in Lanzhou, data for November 2021 are missing.
description: This dataset is based on aerial survey data of Lanzhou Botanical Garden (36°7′28.7"–36°7′27.9"N, 103°43′1"–103°42′23.9"E) from March 1, 2021 to December 30, 2021, and after Agisoft Photoscan splicing, ArcGIS cropped to obtain the DOM of the area. The DOM are registered by ENVI, and then vegetation indices are calculated. During the data collection process, the drone conducted 72 aerial surveys, and a total of 15696 images were taken. These images have a resolution of 5 cm. This dataset includes a total of 72 data file packages, each of which is named after a date, and the package contains the DOM, ExG, ExG and GLI data of the day, with a total of 864 files and 95GB of data. DOM files are in TIF format, and vegetation index files are in ENVI format. Affected by the novel coronavirus epidemic in Lanzhou, data for November 2021 are missing.
DOI: 10.57760/sciencedb.02023
title: Questionnaire of the Impact of Normative Nosocomial Infection Knowledge Training
title: Questionnaire of the Impact of Normative Nosocomial Infection Knowledge Training

description: With medical staff from a tertiary stomatological hospital in Guangzhou, China selected as the survey respondents, we conducted two rounds of surveys on the same sample with the same scale. During the interval between the two rounds of survey, the respondents were randomly assigned to the intervention group and the control group, and a 3-month nosocomial infection prevention and control training was carried out for the intervention group, while no intervention was imposed on the control group.
description: With medical staff from a tertiary stomatological hospital in Guangzhou, China selected as the survey respondents, we conducted two rounds of surveys on the same sample with the same scale. During the interval between the two rounds of survey, the respondents were randomly assigned to the intervention group and the control group, and a 3-month nosocomial infection prevention and control training was carried out for the intervention group, while no intervention was imposed on the control group.
DOI: 10.57760/sciencedb.02053
title: Datasets of reconstructed sea surface salinity in the South China Sea
title: Datasets of reconstructed sea surface salinity in the South China Sea

description: Salinity is one of the basic physical properties of seawater that can be used to trace different water masses and to infer chemical behaviors in the ocean, especially in marginal seas. Limited by the coverage of direct observations, however, available salinity data are lacking both spatially and temporally high resolutions. To supplement the salinity database, this paper reconstructed sea surface salinity (SSS) with a reasonably high spatial resolution (0.05º×0.05º) over 2003-2020 in the South China Sea (SCS) with a machine learning algorithm using MODIS-Aqua remote sensing data and observational SSS data.
description: Salinity is one of the basic physical properties of seawater that can be used to trace different water masses and to infer chemical behaviors in the ocean, especially in marginal seas. Limited by the coverage of direct observations, however, available salinity data are lacking both spatially and temporally high resolutions. To supplement the salinity database, this paper reconstructed sea surface salinity (SSS) with a reasonably high spatial resolution (0.05º×0.05º) over 2003-2020 in the South China Sea (SCS) with a machine learning algorithm using MODIS-Aqua remote sensing data and observational SSS data.
DOI: 10.57760/sciencedb.01870
title: A dataset on the call characteristics of 43 anuran species in China
title: 中国43种蛙类鸣声特征数据集

description: Calls of anuran species are generally species-specific, and understanding the call characteristic is the basis of using bioacoustics to investigate species diversity and monitor species. In this study, we summarized the call data of 43 anuran species recorded by high-fidelity recorder in the field during 2012-2020, and provided a call characteristic dataset composed of oscillogram and spectrogram of 61 calls after noise reduction processing of audio files. In addition, the data description file contained a species list and sample information. The dataset comprised a variety of temporal and spectral characteristic of calls, such as monosyllabic/polysyllabic, note number, call duration, inter-note interval, call duration, dominant frequency, fundamental frequency, and harmonics, etc., providing support for the acoustic research, species diversity survey and call monitoring of anuran species in China.
description: Calls of anuran species are generally species-specific, and understanding the call characteristic is the basis of using bioacoustics to investigate species diversity and monitor species. In this study, we summarized the call data of 43 anuran species recorded by high-fidelity recorder in the field during 2012-2020, and provided a call characteristic dataset composed of oscillogram and spectrogram of 61 calls after noise reduction processing of audio files. In addition, the data description file contained a species list and sample information. The dataset comprised a variety of temporal and spectral characteristic of calls, such as monosyllabic/polysyllabic, note number, call duration, inter-note interval, call duration, dominant frequency, fundamental frequency, and harmonics, etc., providing support for the acoustic research, species diversity survey and call monitoring of anuran species in China.
DOI: 10.57760/sciencedb.02129
title: Phase 1 articles-data
title: Phase 1 articles-data

description: Phase 1 articles. Articles included in the review.
description: Phase 1 articles. Articles included in the review.
DOI: 10.57760/sciencedb.02168
title: One-dimensional GOTM-ERSEM model at the SEATS station, South China Sea
title: One-dimensional GOTM-ERSEM model at the SEATS station, South China Sea

description: This data set is associated with the manuscript submitted to JGR: Ocean, which is entitled 'The effects of atmospheric nitrogen deposition on the marine ecosystem of the northern South China Sea'.Brief Summary: The deposition of nitrogen (AD-N) to the ocean, mostly from human fertilizer usage and fossil fuel combustion released into the atmosphere, can impact the offshore ocean ecosystem, and the northern South China Sea (NSCS) is a hot spot of AD-N’s ecosystem influence. This is because the NSCS is surrounded by countries and regions that have rapid economic development and consequently gigantic emission. Recently, understanding has been achieved that the land-sourced AD-N can provide the nutrients that are the bottleneck of ecosystem production. To further understand AD-N’s ecosystem effects on a representative station of NSCS, a one-dimensional physical-biological model was configurated. The results showed that the AD-N could increase the portion of the tiniest phytoplankton group, further resulting in a counter-intuitive reduction of the export efficiency of organic carbon up. Interannually, the AD-N could contribute more to export during weaker wind and lower nutrient conditions. These results highlight the critical role of AD-N for the NSCS, which was overlooked previously, yet should be better represented in the future modeling framework of regional ecosystems. 
description: This data set is associated with the manuscript submitted to JGR: Ocean, which is entitled 'The effects of atmospheric nitrogen deposition on the marine ecosystem of the northern South China Sea'.Brief Summary: The deposition of nitrogen (AD-N) to the ocean, mostly from human fertilizer usage and fossil fuel combustion released into the atmosphere, can impact the offshore ocean ecosystem, and the northern South China Sea (NSCS) is a hot spot of AD-N’s ecosystem influence. This is because the NSCS is surrounded by countries and regions that have rapid economic development and consequently gigantic emission. Recently, understanding has been achieved that the land-sourced AD-N can provide the nutrients that are the bottleneck of ecosystem production. To further understand AD-N’s ecosystem effects on a representative station of NSCS, a one-dimensional physical-biological model was configurated. The results showed that the AD-N could increase the portion of the tiniest phytoplankton group, further resulting in a counter-intuitive reduction of the export efficiency of organic carbon up. Interannually, the AD-N could contribute more to export during weaker wind and lower nutrient conditions. These results highlight the critical role of AD-N for the NSCS, which was overlooked previously, yet should be better represented in the future modeling framework of regional ecosystems.
DOI: 10.57760/sciencedb.j00001.00428
title: A dataset of fixed-point observation of 10 rare migratory birds in Poyang Lake from 2021 to 2022
title: 2021-2022年鄱阳湖10种珍稀候鸟定点观测数据集

description: Poyang Lake Wetland is the largest freshwater lake wetland in China and one of the most important wintering grounds for migratory birds. The Bird is an important indicator of wetland health evaluation, so it is of great scientific significance to identify and protect birds. In this paper, we designed a data table that includes essential attribute, spatio-temporal attribute, self attribute and ambient attribute, referring to World Bird Classification and Distribution List, List of national key protected wild animals, and other related papers. Then, we have collected data from the Poyang Lake Wetland Ecological Comprehensive Database Cloud Platform. This dataset contains 6,278 records and 23 fields of 10 rare migratory birds in Poyang Lake, which will help researchers to carry out relevant research and promote the protection of birds in Poyang Lake.
description: Poyang Lake Wetland is the largest freshwater lake wetland in China and one of the most important wintering grounds for migratory birds. The Bird is an important indicator of wetland health evaluation, so it is of great scientific significance to identify and protect birds. In this paper, we designed a data table that includes essential attribute, spatio-temporal attribute, self attribute and ambient attribute, referring to World Bird Classification and Distribution List, List of national key protected wild animals, and other related papers. Then, we have collected data from the Poyang Lake Wetland Ecological Comprehensive Database Cloud Platform. This dataset contains 6,278 records and 23 fields of 10 rare migratory birds in Poyang Lake, which will help researchers to carry out relevant research and promote the protection of birds in Poyang Lake.
DOI: 10.57760/sciencedb.02341
title: Autoimmune uveitis in Behçet's disease and Vogt-Koyanagi-Harada disease differ in tissue immune infiltration and T cell clonality
title: Autoimmune uveitis in Behçet's disease and Vogt-Koyanagi-Harada disease differ in tissue immune infiltration and T cell clonality

description: Non-infectious uveitis is often secondary to systemic autoimmune diseases, with Behçet's disease (BD) and Vogt-Koyanagi-Harada disease (VKHD) as the two most common causes. Uveitis in BD and VKHD can show similar clinical manifestations, but the underlying immunopathogenesis remains unclear. To understand immune landscapes in inflammatory eye tissues, we performed single-cell RNA paired with T cell receptor (TCR) sequencing of immune cell infiltrates in aqueous humour from six patients with BD (N = 3) and VKHD (N = 3) uveitis patients. Single-cell analyses of ocular tissues reveal distinct landscapes of immune cell infiltration and T cell clonal expansions between VKHD and BD uveitis. Preferential involvements of pro-inflammatory CD4+ Th1 cells in VKHD and cytotoxic CD8+ T cells in BD suggest a difference in disease immunopathogenesis and can guide precision disease management.
description: Non-infectious uveitis is often secondary to systemic autoimmune diseases, with Behçet's disease (BD) and Vogt-Koyanagi-Harada disease (VKHD) as the two most common causes. Uveitis in BD and VKHD can show similar clinical manifestations, but the underlying immunopathogenesis remains unclear. To understand immune landscapes in inflammatory eye tissues, we performed single-cell RNA paired with T cell receptor (TCR) sequencing of immune cell infiltrates in aqueous humour from six patients with BD (N = 3) and VKHD (N = 3) uveitis patients. Single-cell analyses of ocular tissues reveal distinct landscapes of immune cell infiltration and T cell clonal expansions between VKHD and BD uveitis. Preferential involvements of pro-inflammatory CD4+ Th1 cells in VKHD and cytotoxic CD8+ T cells in BD suggest a difference in disease immunopathogenesis and can guide precision disease management.
DOI: 10.57760/sciencedb.o00122.00001
title: IAP observational salinity gridded dataset at 0.25 resolution
title: IAP observational salinity gridded dataset at 0.25 resolution

description: This product used a machine learning approach (feed-forward neural network - FFNN) to reconstruct a high-resolution (0.25° × 0.25°) ocean subsurface (1–2000 m) salinity dataset for the period 1993–2018 by merging in situ salinity profile observations with high-resolution (0.25° × 0.25°) satellite remote sensing altimetry absolute dynamic topography (ADT), sea surface temperature (SST), sea surface wind (SSW) field data, and a coarse resolution (1° × 1°) gridded salinity product. The new 0.25° × 0.25° reconstruction shows more realistic spatial signals in the regions with strong mesoscale variations, e.g., the Gulf Stream, Kuroshio, and Antarctic Circumpolar Current regions, than the 1° × 1° resolution product, indicating the efficiency of the machine learning approach in bringing satellite observations together with in situ observations. The large-scale salinity patterns from 0.25° × 0.25° data are consistent with the 1° × 1°gridded salinity field, suggesting the persistence of the large-scale signals in the high-resolution reconstruction.Time Range:1993.01-2018.12Region:GlobalLongitude:180°W~180°ELatitude:70°S~70°NParameters:SalinityHorizontal Resolution:0.25° × 0.25°Vertical Resolution:41 levels (1-2000 m)Temporal Resolution:monthlyStorage Format:netcdf
description: This product used a machine learning approach (feed-forward neural network - FFNN) to reconstruct a high-resolution (0.25° × 0.25°) ocean subsurface (1–2000 m) salinity dataset for the period 1993–2018 by merging in situ salinity profile observations with high-resolution (0.25° × 0.25°) satellite remote sensing altimetry absolute dynamic topography (ADT), sea surface temperature (SST), sea surface wind (SSW) field data, and a coarse resolution (1° × 1°) gridded salinity product. The new 0.25° × 0.25° reconstruction shows more realistic spatial signals in the regions with strong mesoscale variations, e.g., the Gulf Stream, Kuroshio, and Antarctic Circumpolar Current regions, than the 1° × 1° resolution product, indicating the efficiency of the machine learning approach in bringing satellite observations together with in situ observations. The large-scale salinity patterns from 0.25° × 0.25° data are consistent with the 1° × 1°gridded salinity field, suggesting the persistence of the large-scale signals in the high-resolution reconstruction.Time Range:1993.01-2018.12Region:GlobalLongitude:180°W~180°ELatitude:70°S~70°NParameters:SalinityHorizontal Resolution:0.25° × 0.25°Vertical Resolution:41 levels (1-2000 m)Temporal Resolution:monthlyStorage Format:netcdf
DOI: 10.57760/sciencedb.02429
title: Northwest Pacific reef-building corals biogeographic distribution
title: Northwest Pacific reef-building corals biogeographic distribution

description: This dataset provides comprehensive reef-building coral distribution data in the Northwest Pacific Ocean. The dataset assembled here spans almost the entire geographic range of the SCS and Kuroshio area, from the lowest latitude reefs of the Nansha Islands and the Sulu Sea to the Honshu in Japan. The total number of reef-building coral species recorded in all areas was 607 after removing the species for which there was confusion.
description: This dataset provides comprehensive reef-building coral distribution data in the Northwest Pacific Ocean. The dataset assembled here spans almost the entire geographic range of the SCS and Kuroshio area, from the lowest latitude reefs of the Nansha Islands and the Sulu Sea to the Honshu in Japan. The total number of reef-building coral species recorded in all areas was 607 after removing the species for which there was confusion.
DOI: 10.57760/sciencedb.02432
title: Raw data for the article "Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals"
title: Raw data for the article "Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals"

description: supplemental data of Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals
description: supplemental data of Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals