cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5063/f1b56h6f
title: Glacier runoff influences biogeochemistry and resource availability in coastal temperate rainforest streams: Implications for juvenile salmon growth

description: To assess heterogeneity in stream habitat quality for juvenile salmon in a watershed in the Alaska Coast Mountains, we collected organic matter and invertebrate drift and measured streamwater physical and biogeochemical properties over the main runoff season in two adjacent tributaries, one fed mainly by rain and the other partially by glacier ice/snowmelt. We collected organic matter (i.e. detritus) and invertebrate drift, and measured streamwater physical (temperature, flow, and turbidity) and biogeochemical properties (C, N, and P) during the main runoff season in both streams. We then used bioenergetic modeling to evaluate how temporal patterns in water temperature and invertebrate drift in each tributary influence juvenile salmon growth potential.
DOI: 10.25345/c5t14tv1f
title: MassIVE Reanalysis RMSV000000354.6690 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, AMZ1 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tv2x
title: MassIVE Reanalysis RMSV000000354.7076 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PDIK1L [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tv3d
title: MassIVE Reanalysis RMSV000000354.7460 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, UBXN4 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1bg2mfd
title: Cannibalism in Indian house gecko, at Kolkata, India, 8 May 2022

description: Video showing a Hemidactylus flaviviridis juvenile preying on another smaller juvenile.. First report of a juvenile Hemidcatylus flaviviridis cannibalizing another juvenile in their natural habitat. The juvenile is holding one of the hind legs of the prey in its mouth
DOI: 10.25345/c5t14tv4w
title: MassIVE Reanalysis RMSV000000354.7668 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SEMA4F [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tv5c
title: MassIVE Reanalysis RMSV000000354.7847 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TUBA1B [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1bv7f23
title: The Effects of Burrow Presence on Local Herptile Abundance

description: The following data contains species-specific traits, abundance, and burrow presence within deserts in Southern California.
DOI: 10.25345/c5t14tv6v
title: MassIVE Reanalysis RMSV000000354.8056 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LACRT [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tv7b
title: MassIVE Reanalysis RMSV000000354.8442 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DNAJB2 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tv8t
title: MassIVE Reanalysis RMSV000000354.8829 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DDX39A [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1c53j9c
title: Geolocations of all Ephedra californica shrubs at key ecological areas within the San Joaquin Desert.

description: The geolocation of all Ephedra californica shrubs withing key ecological areas within the San Joaquin Desert. All shrubs have been geolocated via the Google earth satellite.
DOI: 10.25345/c5t14tv99
title: MassIVE Reanalysis RMSV000000354.9220 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HCN3 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1cc0z41
title: Avian biodiversity data from Global Biodiversity Information Facility for the Central Desert Ecological Sites of California

description: Bird observations at different spatial scales at several sites and regions across deserts in California. All data pulled from GBIF.
DOI: 10.25345/c5t14tw0d
title: MassIVE MSV000090956 - Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel
title: Single-cell proteomics aims to characterize biological function and heterogeneity at the level of proteins in an unbiased manner. It is currently limited in proteomic depth, throughput and robustness, a challenge that we address here by a streamlined multiplexed workflow using data-independent acquisition (mDIA). We demonstrate automated and complete dimethyl labeling of bulk or single-cell samples, without losing proteomic depth. In single runs of mammalian cells, a three-plex analysis of tryptic peptides quantified 7,700 proteins per channel. The Lys-N enzyme enables five-plex quantification at MS1 and MS2 level. Because the multiplex channels are quantitatively isolated from each other, mDIA accommodates a reference channel that does not interfere with the target channels. Our algorithm RefQuant takes advantage of this feature and confidently quantifies close to 4,000 proteins in single cells with excellent reproducibility, while our workflow currently allows routine analysis of 80 single cells per day. The concept of a stable proteome still holds at this deeper proteome coverage.
DOI: 10.25345/c5t14tw1w
title: MassIVE Reanalysis RMSV000000354.9811 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RPS7 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1cf9njs
title: Census of flowering annuals in the open and associated with Larrea tridentata, Mojave Desert, April 2019

description: Larrea tridentata is a well known facilitator of annuals in arid ecosystems. We surveyed the annual flowering community associated with 100 Larrea tridentata and paired open areas in the Mojave Desert three times over the course of the flowering season of 2019. Only annual species that were flowering in the area were identified. Plant density, species richness and flowering density was recorded for each shrub. A total of 15 annual species across 6 families and 14 genera were recorded.This dataset has three files:1. flowering_censuses_2019 contains the annual community data (e.g. density, richness, and floral density)2. ShrubInfo contains the characteristics of each shrub (e.g. size and location)3. code2.R contains code related to the presentation and analysis of the data.
DOI: 10.25345/c5t14tw2c
title: MassIVE Reanalysis RMSV000000354.9989 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TMEM30B [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tw3v
title: MassIVE Reanalysis RMSV000000354.10200 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, IQUB [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1cv4g51
title: Data from: Disturbance facilitates tree range contractions in the interior western United States

description: The data and code provided here accompany the analysis done for the manuscript titled "Disturbance facilitates tree range contractions in the interior western US". Included in this dataset are FIA plots that have been narrowed down to annual surveys only, categorized by the most recent and impactful disturbance experienced over the past 30 years in each plot.
DOI: 10.25345/c5t14tw4b
title: MassIVE Reanalysis RMSV000000354.10586 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ACADSB [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tw5t
title: MassIVE Reanalysis RMSV000000354.10970 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CD79B [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1d21w2w
title: Geolocations of all Ephedra californica shrubs at key ecological areas within the Mojave Desert.

description: The geolocation of all Ephedra californica shrubs within the Mojave Desert. All shrubs have been geolocated via the Google earth satellite.
DOI: 10.25345/c5t14tw69
title: MassIVE Reanalysis RMSV000000354.11358 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ELL3 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1d50kd9
title: Decomposition and nitrogen mineralization in five common urban habitat types across seven college campuses in Southern California (January-May 2019)

description: Urban landscaping conversions can alter decomposition processes and soil respiration, making it difficult to forecast regional CO2 emissions. Here we explore rates of initial mass loss and net nitrogen (N) mineralization in natural and four common urban landcovers (water -wise, water-wise with mulch, shrub, and lawn) from sites across seven Colleges in southern California. To better understand decomposition processes in surface soils across various urban habitats, we measured rates of leaf litter decomposition and nitrogen (N) mineralization between 28 January and 17 May 2019, for two dominant native trees of the southern California region: coastal live oak (Quercus agrifolia Neé, “oak”) and western sycamore (Platanus racemosa L., “sycamore”) in natural and urbanized land-covers at seven college campuses in southern California. At each college, we placed litter bags in five landcover types that typify southern California urban landscapes: (1) lawns, dominated by non-native grasses and high water inputs; (2) hedge/shrub environments, defined by at least 75% cover of non-native shrubs with water inputs; (3) water-wise gardens (no mulch), which consist of native or non-native plants with reduced water inputs but no mulch; (4) water-wise (with mulch) gardens, with native or non-native plants, reduced water inputs and a mulch (most often mixed wood chips) covered soil; and (5) natural areas, receiving no water subsidies often dominated by native shrubs or non-native annuals.
DOI: 10.25345/c5t14tw7s
title: MassIVE Reanalysis RMSV000000354.11562 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZWILCH [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tw88
title: MassIVE Reanalysis RMSV000000354.11732 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, STBD1 [launched by 89f2bcaf3c714e3788b179581bc93515]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1db8087
title: Geolocations of all Ephedra californica shrubs at key ecological areas within the Mojave Desert.

description: The geolocation of all Ephedra californica shrubs within the Mojave Desert. All shrubs have been geolocated via the Google earth satellite.
DOI: 10.25345/c5t14tw9r
title: MassIVE Reanalysis RMSV000000355.4672 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GAB3 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tx0v
title: MassIVE Reanalysis RMSV000000355.4851 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DOC2B [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1dv1hbv
title: TBEP Up in the Air and Down in the Water_Nitrogen Data, Tampa Bay Watershed Florida 2021 to 2022

description: Data is being collected on nitrogen forms and concentrations in atmospheric wet deposition, stormwater runoff and throughfall from the urban tree canopy. Sampling sites are Pinellas and Hillsborough Counties Florida. Data includes nitrate stable isotope analysis of wet deposition and stormwater, as well as cell count data from a bioassay of wet deposition, stormwater, and throughfall with Karenia brevis and Pyrodinium bahamense.
DOI: 10.25345/c5t14tx1b
title: MassIVE Reanalysis RMSV000000355.5062 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C4orf40 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.