cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21401646.v2
title: Transcriptome assembly of B. nonstop

description: Raw transcriptomic Illumina reads were adapter and quality trimmed using BBDuk from BBMap package with the following parameters: “qtrim=rl trimq=20 ktrim=r k=22 mink=11 hdist=2 tpe tbo”. Trimmed RNA-seq reads were assembled using Trinity v2.3.2 in genome-guided mode.
DOI: 10.6084/m9.figshare.24066234.v3
title: the polyketide to fatty acid transition in the evolution of animal lipid metabolism:the animal FAS-like PKSs

description: Animals use a distinct fatty acid synthase (FAS) most closely related to the type I polyketide synthase (PKS) enzymes. While FASs synthesize simple lipids, PKSs produce complex specialized metabolites. The evolutionary origin of the animal FAS, and its relationship to the diversity of PKSs, remain surprisingly mysterious despite the critical role of lipid synthesis in cellular metabolism. Previously, an enzyme EcPKS1 from sacoglossan molluscs was described that was closely related to animal FAS enzymes, but instead preformed PKS-like chemistry. A few other related enzymes were apparent in molluscs, mostly in the photosynthetic sacoglossans. Here, we asked whether such enzymes were limited to a small subset of species, and whether they might answer the mystery of the origin of animal lipid biosynthesis. We performed a sequence-based analysis, unexpectedly discovering a huge diversity of widespread EcPKS1-like enzymes that form a grade separating PKS from the animal FAS clade in phylogenetic analyses. PKSs and FASs are widespread among major animal phyla except for sponges and ctenophores, where they are apparently absent. Surprisingly, molluscs and arthropods contain abundant EcPKS1-like enzymes, correlated with their rich polyketide chemistry. Molluscan EcPKS1 relatives are associated with a lack of other defenses, consistent with the hypothesis that AFPKs provide a chemical defense for some lineages. By contrast, shelled molluscs (physically defended) generally contain PKSs instead. Arthropods have few or no PKSs, but their abundant EcPKS1-like enzymes contributed to their ecological and evolutionary success. For example, some of the genes found in the EcPKS1 clade were previously associated with cuticular hydrocarbon and pheromone biosynthesis. Based upon the biochemical, genetic, and phylogenetic features of these enzymes, we propose that they comprise a new family, the animal FAS-like PKSs (AFPKS). Although animal metabolism is well studied, surprising new metabolic enzyme classes such as AFPKs still await discovery and may be unrecognized drivers of hyperdiverse animal radiations including gastropods, beetles and spiders.
DOI: 10.6084/m9.figshare.24418084.v1
title: Covalent Organic Framework Membrane for Efficient Removal of Emerging Trace Organic Contaminants from Water

description: Covalent Organic Framework Membrane for Efficient Removal of Emerging Trace Organic Contaminants from Water
DOI: 10.6084/m9.figshare.27880471.v2
title: A Novel Approach of High Dimensional Linear Hypothesis Testing Problem

description: This article proposes an innovative double power-enhanced testing procedure for inference on high-dimensional linear hypotheses in high-dimensional regression models. Through a projection approach that aims to separate useful inferential information from the nuisance one, our proposed test accurately accounts for the impact of high-dimensional nuisance parameters. We discover that with a carefully-designed projection matrix, the projection procedure enables us to transform the problem of interest into a test on moment conditions, from which we construct a U-statistic-based test that is applicable in simultaneous inference on a diverging number of linear hypotheses. We prove that under regularity conditions, the plug-in test statistic converges to its oracle counterpart, acting as well as if the nuisance parameters were known in advance. Moreover, we introduce an implementation-friendly version to tackle the computational challenge. Asymptotic null normality is established to provide convenient tools for statistical inference, accompanied by rigorous power analysis. To further strengthen the testing power, we develop two power enhancement techniques to boost the power from two distinct aspects, respectively, and integrate them into one powerful testing procedure to achieve double power enhancement. The finite-sample performance is demonstrated using simulation studies, and an empirical analysis of a real data example. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.28927457.v1
title: Stan zmiennych w latach 2018 i 2023 oraz ranking WZ

description: Tabele przedstawiają zmienne społeczno-gospodarcze oraz ranking WZ gmin powiatu krakowskiego w latach 2023 i 2018
DOI: 10.17632/b45mspjmz3
title: Data for: Applications of statistical process control in the management of Unaccounted for Gas

description: Historic UAG and daily aggregate gas flow, as used for simulation study. Also available online from National Grid.
DOI: 10.6084/m9.figshare.23574957.v1
title: IEEE 14-bus system data

description: The data for IEEE 14 bus system is given
DOI: 10.6084/m9.figshare.28669889.v1
title: Data for "Acquisitions as Catalysts for Inventor Departures in the Biotechnology Industry"

description: Panel Data used in the paper "Acquisitions as Catalysts for Inventor Departures in the Biotechnology Industry"
DOI: 10.6084/m9.figshare.4560526.v1
title: Main analysis data files (participant no/run no)

description: Main analysis data files (prts & sdm) for each participant and each run
DOI: 10.17632/fxy862xx4m
title: Dataset of Operational Energy of forty Andean Buildings from 1980 to 2020.

description: The files presented in this Dataset Article are divided in three parts: the Operational Energy results; the Simulation data which include simulation files and morphological/materials characteristics of each sample; and the Climate data which refer to an updated climate file for the study region. These three parts of the data are described below:
1) Operational Energy Data.
The is the entire house Operational Energy, named as Specific Total Operational Energy STOE, which accounts for the summatory of space heating and space cooling (sh + sc), lighting and electrical appliances (l + e) and Domestic Hot Water and Cooking (d + c), divided by the total floor area of each residential building. This value is calculated for each of the forty houses in the study accounting both annually and a 50-years lifespan consumption. 
These results are shown in the repository in the file named STOE.xlsx. 
2) Simulation Data 
This section contains two types of files. On one hand, numerical data is presented in three Excel files which are in the repository with the names: Building_Features.xlsx, Measurements.xlsx, and Measurements&Simulations_Results.xlsx. On the other hand, there are forty DesignBuilder (.dsb) files which are in the repository in a folder named SimulationDATA. In First instance this section presents the Building_Features.xlsx table that contains the raw data from the envelope materials of each one of the 40 sample buildings. 
The Measurements.xlsx file contains the raw data measured in situ from eight houses used in the study to validate the simulations. 
Furthermore, the Measurements&Simulations_Results.xlsx file, this table contains the raw data from each one of the eight samples measured in-situ and simulated in DesignBuilder accordingly.
Lastly, this section presents 40 DesignBuilder Files (.dsb) one for each of the 40 analysed houses and stored in separate .dsb files, named using the format P#_S#, where P represents the period (decade), and S represents the sample number. Each file is configured according to the unique morphology and the materials are taken from the file Building_Features.xlsx . The intensity and schedule of lighting, equipment and occupancy were established as a common setting for all forty samples. 
3) Climate Data 
This section contains two files. The first one is the climate data gathered to update the weather file to use for simulation, named as Climate_Data_Forupdate.xlsx. The second one is the updated climate file itself, named as ECU_CUENCA_IWEC_2022.epw.
The Climate_Data_Forupdate.xlsx is an excel table, which was created through the climate data gathered during July and August from the weather station ICUENC29 (coordinates: 2.89°S, 79.01°W, altitude: 2564 masl) 
Finally, the second file is ECU_CUENCA_IWEC_2022.epw which is an Energy Plus Weather file updated with the information collected from the meteorological station from July 1, 2021, at 12:04 AM to August 31, 2021, at 11:59 PM, with a sampling interval of 1-hour.
DOI: 10.17632/s3djdhrvv6
title: Allergic diseases in Puebla City

description: An observational, cross-sectional, descriptive, and retrospective study was carried out. The records of patients who underwent a skin prick test with 45 aeroallergens in an allergic disease clinic at "Hospital Ángeles Puebla", in the period from January 2016 to August 2021, were reviewed individually. Pediatric and adult patients were included. All tests were executed and interpreted by a pediatric allergist and immunologist. We aimed to describe the sensitization pattern in a Mexican population with allergic conjunctivitis in the last five years. We included age, sex, patient allergic disease (asthma, rhinitis, conjunctivitis, dermatitis and urticaria) and the aeroallergen to which the patient was sensitized, in case the skin prick test was negative the presumptive diagnosis was recorded in a separate column.
DOI: 10.6084/m9.figshare.11523114.v1
title: Data for "Ecology rather than people restrict gene flow in Okavango‐Kalahari lions"

description: Data for the paper, "Dures et. al. (2020) Ecology rather than people restrict gene flow in Okavango‐Kalahari lions. Animal Conservation"Includes files for sampling locations, microsatellite genotypes, distance matrices and resistance surface layers.<br>Note: the 'samples' data is a .shp file and needs all components of the same name to be in the same folder to work properly.
DOI: 10.6084/m9.figshare.24173889.v1
title: InstaNovo: Supplementary files supporting the data pre-processing, tool usage, and analysis performed on 8 different application-centric datasets.

description: Here we include:<b>Data pre-processing</b>Script for pre-processing spectra to be used in InstaNovo (preprocess_pipeline.py)<b>Code implementation</b>Brief installation guide and system requirements overview (README.pdf)<b>Analysis</b> (Supplement_data_analysis.zip)Jupyter Notebooks: The folder includes several Jupyter Notebooks. These notebooks are used for data analysis, comparison, and visualization.Data Files: There are various data files, including CSV files. These files contain peptide predictions and other results.
DOI: 10.6084/m9.figshare.7599095.v1
title: Effects of rapid evolution on species coexistence

description: Data supporting the findings of Hart et al. (2019) Effects of rapid evolution on species coexistence. <i>Proceedings of the National Academy of Sciences, USA</i>.<br>
DOI: 10.4121/uuid:b9f3df9e-08bc-4331-96da-7cabfa8970c0
title: Real-world sales forecasting benchmark data

description: This dataset contains one .csv file that can be used as a new benchmark data for the solving of real-world sales forecasting problem. All data are real and obtained experimentally in production environment in one of the biggest retail company in Bosnia and Herzegovina. The available data in this dataset are in period from 2010 to 2018.
DOI: 10.6084/m9.figshare.19085603.v2
title: South American freshwater fish diversity shaped by Andean uplift since the Late Cretaceous

description: 1. input rasters topography South America for scenarios A, B and C2. river generation algorithm3. results river generation algorithm for scenarios A, B and C4. gen3sis input rasters river landscape for scenarios A, B and C5. richness data and script to compare simulation output to richness data
DOI: 10.6084/m9.figshare.23607609.v1
title: patient12.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.24803325.v1
title: Liver patient 4 Analysis

description: This item contains the code and data to perform analysis of patient 4's liver data from the manuscript "<b>Niche-DE: niche differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions</b>"
DOI: 10.6084/m9.figshare.25218122.v1
title: Alignments of KaiA3, KaiA, and NarL orthologs

description: Alignments of KaiA3, KaiA, and NarL orthologs
DOI: 10.6084/m9.figshare.26199002.v4
title: <b>Charging port point-cloud recognition and positioning method based on density clustering and geometric features</b>

description: 随着新能源电动汽车的普及和市场规模的不断扩大，电动汽车的自动充电问题逐渐成为研究热点。目前，在充电机器人领域有丰富的研究成果，其中一些已经能够实现自主充电。但是，在与充电口自动对接时，核心充电口的识别和定位存在准确率低、精度不足、计算复杂等问题，说明目前的充电口识别和定位方法存在一定的局限性。为了提高充电口识别和定位的效率和准确性，本文提出了一种新方法：基于基于密度的噪声应用空间聚类（DBSCAN）分割算法，并集成多条件约束、几何特征和双边界框：（1）利用RGB-D特征重建点云数据，并将DBSCAN算法与多条件约束相结合，将充电口区域分割成内部插座和外部半圆形点云;（2）对于分割后的点云图像，整合几何特征和双边界框，分别提取充电口的位置和方向，并进行交叉引用验证。通过在充电口不同方向平移、倾斜角度、增加物体干扰、不同光照度（0.2lux、60lux、273lux）的复杂环境下进行充电口识别和定位、精密测试、比对和对接实验，验证了该方法的鲁棒性和可行性。实验数据表明，最大位置误差为 0.061mm，最大角度误差为 0.61°，满足对接精度要求。而且，与其他研究方案相比，性能得到了一定程度的提升，为电动汽车充电的自动化提供了技术参考。
DOI: 10.6084/m9.figshare.28807238.v2
title: UV-decomposition network dataset

description: This is the dataset of UV-decomposition network experiment in China. With this data, we explored the influence of UV radiation on litter decomposition across diverse grassland ecosystems.
DOI: 10.6084/m9.figshare.29127965.v2
title: Processed data ( script number 2)

description: Data for subsequent analysis
DOI: 10.17632/shrmrs5srv
title: Addressing Food Scarcity in Municipality of Tulunan, North Cotabato: Challenges and Community-Based Solutions

description: Tulunan, a municipality in North Cotabato, Philippines, is predominantly agricultural, with rice, corn, and other crops as primary livelihoods. Despite this, food scarcity remains a pressing concern due to recurring natural disasters, limited agricultural resources, and socio-economic challenges. Ensuring food security in Tulunan is vital to improving the well-being of its residents and supporting sustainable local development.
Food scarcity, a critical global issue, refers to the lack of sufficient food to meet the dietary needs of a population. It is driven by various factors, including population growth, climate change, unequal food distribution, and resource mismanagement. Food scarcity impacts billions of lives, leading to malnutrition, poverty, and social unrest. Tackling food scarcity is essential to achieve global food security and ensure equitable access to nutrition for all.
DOI: 10.17632/ydf67m778t
title:  El proceso de diseño ya no es lo que era entonces: La joven arquitectura del estudio BDELTV en Buenos Aires, 1965-1970 

description: La Papelera Koch Polito constituye el último de los proyectos en los que Baudizzone, Díaz, Erbin, Lestard, Traine y Varas -BDELTV- experimentaron con sistemas estándar de mercado y materiales novedosos en formas innovadoras. El caso permite verificar la agenda del BDELTV: relación entre forma, logística y costos; el vínculo entre mercado de la construcción y las expectativas de patrones y clientes y sus especulaciones respecto de los contenidos de la arquitectura y la comunicación pública. Con edificios específicos o sorpresivas instalaciones artísticas inspiradas por sitios determinados, identificadas en el medio artístico como los happenings, la modernización “tomó el mando” y el ciudadano común se encontró inmerso en un universo cotidiano de creatividad y sorpresas. La arquitectura de BDELTV parece haberse nutrido de ese ciclo de creatividad y fuga, de exploración y desafío a las convenciones, cruzando los campos de la arquitectura y la plástica.
DOI: 10.6084/m9.figshare.25654188.v1
title: Regulation of blood-brain barrier integrity by <i>Dmp1</i>-expressing astrocytes through mitochondrial transfer

description: The blood-brain barrier (BBB) acts as the crucial physical filtration structure in the central nervous system (CNS). Here, we investigate the role of a specific subset of astrocytes in the regulation of BBB integrity. We showed that <i>Dmp1-</i>expressing astrocytes transfer mitochondria to endothelial cells via their endfeet for maintaining BBB integrity. Deletion of the Mitofusin 2 (<i>Mfn2</i>) gene in <i>Dmp1</i>-expressing astrocytes inhibited the mitochondrial transfer and caused BBB leakage. In addition, the decrease of MFN2 in astrocytes contributes to the age-associated reduction of mitochondrial transfer efficiency and thus compromises the integrity of BBB. Taken together, we describe a mechanism in which astrocytes regulate BBB integrity through mitochondrial transfer. Our findings provide new insights into the cellular framework that underpins the progressive breakdown of BBB associated with aging and disease.
DOI: 10.6084/m9.figshare.29019059.v1
title: Assessment of Microvessel Isolation Protocol by Follow-on Immunostaining and Confocal Microscopy to Visually Gauge the Level of Capillary Enrichment and the Inclusion of Vessels containing alpha-Smooth Muscle Actin-positive Cells.

description: Validation study of murine brain microvessel collection methods comparing the output from samples generated from: Group 1--whole brain, Group 2--enrichment by density gradient centrifugation (DSG), and Group 3--DSG plus follow-on filtration. Microvessel fragment output from each protocol was analyzed by applying the following protocol: fixation by 4% paraformaldehyde in PBS, immunostaining for specific vascular markers (Endothelial cells--IsolectinB4 or PECAM-1/CD31, Mural cells-- PDGFRbeta or alpha Smooth Muscle Actin/aSMA). A subset of samples were collected from NG2:DsRed/+ animals. Cell nuclei were labeled with DAPI.
DOI: 10.17632/y8nstxmdrg
title: Relaxation data for commercial NMC and LFP cells

description: Benchmark Relaxation Dataset 
++++++++++++++++++++++++++++++

This dataset contains the electrochemical and relaxation data referenced in the publication entitled 'Benchmark dataset for the study of the relaxation patterns of commercial NMC811 and LFP cells' published in Cell Reports Physical Science. 
 
The dataset includes data gathered during the execution of protocol 1 and protocol 2, established in the paper. 

The full electrochemical data consists of MACCOR txt files with the full cell history of one cell per folder. Details for each cell is included in a readme file included in each folder.
P1 stands for protocol 1 and P2 for protocol 2. UP and DOWN refers to the temperature direction for protocol 2. UP was used when the temperature increased from 25 to 55oC in 5oC increments. DOWN was used when the temperature was decreased from 30 to -15oC in 5oC increments. 

The relaxation only data is contained in a zip file with ".mat" extensions, which follows the binary format used by MATLAB. 
The data within each file is organized based on the relaxation following charge or discharge cycles. Within each relaxation data double, five columns are present: 

1. Voltage (V)
2. Time (s)
3. C-rate of the previous step (hr)
4. Depth-of-discharge (%)
5. Temperature (degC)

More information is provided in the readme file. Examples of utilization are provided in the m file.
DOI: 10.6084/m9.figshare.12792884.v1
title: Multiple Myeloma Cell Line (MM1S)

description: Whole genome sequencing data generated on multiple myeloma cell line.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.14254316.v2
title: Genome-wide epistatic interactions of litter size at birth in Chinese indigenous pigs

description: Improving litter size at birth (TNB) and the number of piglets born alive (NBA) are the main breeding goals related to litter traits, which are economically important. A better understanding of genetic architecture underlying TNB and NBA traits could increase pig production efficiency. However, most previous studies on these traits focus on additive genetic effects, while epistatic interactions underlying TNB and NBA traits has not yet been well investigated, which are essential to understand how traits-related genes interact. Herein, we conducted genome scans of epistatic interactions underlying TNB and NBA traits in a total of 150 Chinese indigenous pigs (75 Jinhua and 75 Shengxian Plotted pigs) with high throughput genomic data. Based on SNPs with high interaction values and connectivity scores, we identified eight promising candidate genes, namely <i>AKT2</i>, <i>TSC1</i>, <i>MTOR</i>, <i>PIK3R5</i>, <i>TIAM1</i>, <i>FGF14</i>, <i>RALB</i>, and <i>ROR2</i>, potentially associated with litter traits in pigs. Moreover, the underlying pathways, e.g., calcium ion transport, pointed out their roles in litter size related-traits. Our findings provide new insight into genetic architecture of litter traits in pigs and will benefit economic profits in pig production.
DOI: 10.6084/m9.figshare.14762154.v3
title: Additional materials for collaborative risk management paper

description: Additional materials for the paper entitled "Collaborative risk management in decentralised multi-tier global supply chains - An exploratory study", which was accepted for publication in International Journal of Logistics Management..
DOI: 10.6084/m9.figshare.14763192.v1
title: stress-strain.xlsx

description: the stress-strain curve of coal specimens in the process of uniaxial compression test.
DOI: 10.6084/m9.figshare.19588486.v1
title: Supplementary Material for: Associations of the Methylation Levels of <b><i>NFAT5</i></b>, <b><i>PVT1</i></b>, <b><i>RPS6KA1</i></b>, and <b><i>MIB1</i></b> with Steroid-Resistant Asthma

description: <b><i>Background:</i></b> This study detected the methylation levels of nuclear factor-5 <i>(NFAT5)</i>, <i>PVT1</i>, ribosomal protein S6 kinase A-1 (<i>RPS6KA1</i>), and <i>MIB1</i> in patients with steroid-resistant asthma (SRA) and explored their associations with SRA. <b><i>Methods:</i></b> In our pilot study, we found abnormal methylation of <i>NFAT5</i>, <i>PVT1</i>, <i>RPS6KA1,</i> and <i>MIB1</i> in SRA patients according to genome-wide methylation screening. This study expanded the sample size to further validate the results of the pilot study. Twenty patients with SRA, 20 patients with bronchial asthma, and 20 healthy volunteers constituted the SRA group, asthma control group, and healthy control group, respectively. The clinical data of all the participants were collected. Peripheral blood was taken for DNA extraction. The methylation loci and levels of <i>NFAT5</i>, <i>PVT1</i>, <i>RPS6KA1,</i> and <i>MIB1</i> were detected using the Sequenom MassARRAY Nanodispenser RS1000. Data were processed and analyzed with SPSS 22.0 software. <b><i>Results:</i></b> There were 24 CpG loci detected in the <i>NFAT5</i> segment 7 in the <i>PVT1</i> segment, 4 in the <i>RPS6KA1</i> segment, and 3 in the <i>MIB1</i> segment. Among these genes, RPS6KA exhibited hypomethylation in the SRA group, which showed significant differences at the CpG_1, CpG_2, and CpG_3 loci compared with the other groups (<i>p</i> &lt; 0.05). No significant differences in the methylation levels of <i>NFAT5</i>, <i>PVT1</i>, and <i>MIB1</i> were observed among the groups (<i>p</i> &gt; 0.05). <b><i>Conclusions:</i></b> <i>RPS6KA1</i> is hypomethylated in SRA patients, which may play a role in the development of SRA via the MAPK signaling pathway. However, the influence of the methylation of <i>NFAT5</i>, <i>PVT1,</i> and <i>MIB1</i> on SRA development remains to be explored.
DOI: 10.6084/m9.figshare.23500503.v1
title: Banche dati geografiche

description: Banche dati geografiche