cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10986568
title: Data and code for the publication 'Fully Non-Linear Neuromorphic Computing with Linear Wave Scattering'

description: This repository contains the source code for the paper https://arxiv.org/abs/2308.16181 on nonlinear neuromorphic computing via linear wave scattering as well as the source data for the figures in the paper.

The idea behind this work is to send optical waves through a linear scattering system like an array of waveguides and optical resonators. These optical resonators or other elements may have tuneable parameters. These tuneable parameters now serve two functions in trying to use the system to solve a machine-learning task: Some of the parameters can be used to inject the input (e.g. images to be classified). Other parameters are trainable and will be slowly updated during training. The code given here simulates physical scattering setups, observes the scattering response for many different training samples, and updates the trainable parameters via gradient descent to minimize the deviation from the desired target output for the training samples. Evaluation of the scattering response as well as calculation of the gradients is done using jax, and training updates are implemented via jax or optax.

See the two subdirectories for the code used in handwritten-digit recognition (a scaled-down version of MNIST) and for fashion-MNIST (with many more neurons and trainable parameters). This code can be run directly to reproduce the results shown in the figures (although a GPU is advisable). To run the code, you need to install jax and optax (and tensorflow for importing data sets).
DOI: 10.15468/dl.c8cfno
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brunei Darussalam",
 "Country is Malaysia",
 "Country is Indonesia",
 "Country is Singapore",
 "Country is Philippines",
 "Country is Papua New Guinea",
 "Country is Timor-Leste"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Lomariopsidaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 584 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004455-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsxsx5
title: Occurrence Download

description: A dataset containing 1907 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poicephalus robustus (Gmelin, 1788)"
 ]
}

 The dataset includes 1907 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004455-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.degung
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Champsocephalus esox (Günther, 1861)"
 ]
}

 The dataset includes 97 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032382-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10974868
title: Geographic range maps for Mammal Diversity Database v1.3 taxonomy

description: Update of mammal maps based on the taxonomy of the Mammal diversity database. These maps are different from the original, have been downscaled and are distributed under the R package mdd (github.com/alrobles/mdd).
DOI: 10.15468/dl.wx2ymn
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Bhutan"
 ]
 },
 "TaxonKey is Saussurea columnaris Hand.-Mazz."
 ]
}

 The dataset includes 98 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10806734
title: Geographic range maps for Mammal Diversity Database v1.3 taxonomy

description: Update of mammal maps based on the taxonomy of the Mammal diversity database. These maps are different from the original, have been downscaled and are distributed under the R package mdd (github.com/alrobles/mdd).
DOI: 10.5281/zenodo.10981039
title: Data from the thesis: Reduced-order models to predict mesoscale mechanical behavior of polycrystalline materials

description: This record contains the data and code from the thesis: Reduced-order models to predict mesoscale mechanical behavior of polycrystalline materials. The contents of the chapter-wise zip files are described in the respective markdown files with the suffix _readme.md.

 

A record containing only the code from the thesis is availabe at: 10.5281/zenodo.10983507.
DOI: 10.5281/zenodo.10981040
title: Data from the thesis: Reduced-order models to predict mesoscale mechanical behavior of polycrystalline materials

description: This record contains the data and code from the thesis: Reduced-order models to predict mesoscale mechanical behavior of polycrystalline materials. The contents of the chapter-wise zip files are described in the respective markdown files with the suffix _readme.md.

 

A record containing only the code from the thesis is availabe at: 10.5281/zenodo.10983507.
DOI: 10.15468/dl.uordh6
title: Occurrence Download

description: A dataset containing 4263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lapeirousia Pourr."
 ]
}

 The dataset includes 4263 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007703-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ux4smj
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphos porosus (Valenciennes, 1837)"
 ]
}

 The dataset includes 118 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004456-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10986710
title: Solution-processed PbS quantum dot infrared laser with room-temperature tuneable emission in the optical telecommunications window - Open Data

description: This is a supplementary upload attached to the paper titled "Solution-processed PbS quantum dot infrared laser with room-temperature tuneable emission in the optical telecommunications window" 10.1038/s41566-021-00878-9.


Figures


All figure data from the publication can be obtained from the original MATLAB .fig files. If one does not have access to MATLAB the figures can be opened using the open source software GNU Octave.


FDFD Simulation


Also in the upload is the original matlab code used to perform the simulations presented in the paper.


"FDFD_2D_Ez_Hz_DFB_laser_UPLOAD" - Variable gain FDFD solver is uploaded as .mat and .pdf files.


To run the code the functions "Dgen" and "gen2xDFB" are required and the .mat files containing the refractive indices "PbS1520" and "Al2O3".


Parameters to vary can be found in the "DASHBOARD" section of the code. The uploaded code solves for the out-of-plane electric field (Ez Mode).
DOI: 10.5281/zenodo.5112913
title: Solution-processed PbS quantum dot infrared laser with room-temperature tuneable emission in the optical telecommunications window - Open Data

description: This is a supplementary upload attached to the paper titled "Solution-processed PbS quantum dot infrared laser with room-temperature tuneable emission in the optical telecommunications window" 10.1038/s41566-021-00878-9.


Figures


All figure data from the publication can be obtained from the original MATLAB .fig files. If one does not have access to MATLAB the figures can be opened using the open source software GNU Octave.


FDFD Simulation


Also in the upload is the original matlab code used to perform the simulations presented in the paper.


"FDFD_2D_Ez_Hz_DFB_laser_UPLOAD" - Variable gain FDFD solver is uploaded as .mat and .pdf files.


To run the code the functions "Dgen" and "gen2xDFB" are required and the .mat files containing the refractive indices "PbS1520" and "Al2O3".


Parameters to vary can be found in the "DASHBOARD" section of the code. The uploaded code solves for the out-of-plane electric field (Ez Mode).
DOI: 10.15468/dl.s7jxaw
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Struthanthus flexicaulis Mart."
 ]
}

 The dataset includes 555 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039197-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10977015
title: PostgreSQL dump with DCSim simulations and raw simulation data

description: The archives contain postgreSQL dump with DCSim simulations and raw simulation dataArchive



simulations_dump.zip


contains the PostgreSQL 15 dump, with schema and data, and a restore command.

 

Archives:



first_phase_archive.zip

second_phase_archive.zip

third_phase_archive.zip

third_phase_archive_extrapolation_x5.zip

third_phase_archive_extrapolation_x10.zip

third_phase_archive_extrapolation_x20.zip

fourth_phase_archive.zip 

fourth_phase_archive_extrapolation.zip


contain the DCSim configurations, output, slurm job description and slurm output, and a CSV file with simulation results for each simulation.
DOI: 10.5281/zenodo.10977016
title: PostgreSQL dump with DCSim simulations and raw simulation data

description: The archives contain postgreSQL dump with DCSim simulations and raw simulation dataArchive



simulations_dump.zip


contains the PostgreSQL 15 dump, with schema and data, and a restore command.

 

Archives:



first_phase_archive.zip

second_phase_archive.zip

third_phase_archive.zip

third_phase_archive_extrapolation_x5.zip

third_phase_archive_extrapolation_x10.zip

third_phase_archive_extrapolation_x20.zip

fourth_phase_archive.zip 

fourth_phase_archive_extrapolation.zip


contain the DCSim configurations, output, slurm job description and slurm output, and a CSV file with simulation results for each simulation.
DOI: 10.15468/dl.ubyxba
title: Occurrence Download

description: A dataset containing 953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus leptodactyloides (Andersson, 1945)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 953 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004456-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rffymr
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chionanthus micranthus (Eichler) M.Lozano & Fuertes"
 ]
}

 The dataset includes 50 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007709-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwrbpp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirrhaea silvana V.P.Castro & Campacci"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138014-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j3gph
title: Occurrence Download

description: A dataset containing 28839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Syrian Arab Republic, Tunisia, Türkiye, Armenia, Azerbaijan, Georgia, Russian Federation, Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, Uzbekistan, Bahrain, Iran (Islamic Republic of), Iraq, Jordan, Kuwait, Oman, Palestine, State of, Israel, Saudi Arabia, Qatar, United Arab Emirates, Libya, Malta, Monaco, Montenegro, Morocco, Italy, Spain, Lebanon, Slovenia, France, Cyprus, Algeria, Gibraltar, Greece, Albania, Croatia, Yemen)",
 "TaxonKey is Lathyrus aphaca L."
 ]
}

 The dataset includes 28839 records from 795 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198454-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dp5kn
title: Occurrence Download

description: A dataset containing 44919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Polemaetus bellicosus (Daudin, 1800)"
 ]
}

 The dataset includes 44919 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198461-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.81w1kd
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scomberomorus sierra Jordan & Starks, 1895"
 ]
}

 The dataset includes 409 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007708-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kttqlt
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa skinneri var. carajarum Barneby"
 ]
}

 The dataset includes 50 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004456-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10981959
title: HagesLab/Absorber_NN - Sample Training Data and Models
DOI: 10.5281/zenodo.10981960
title: HagesLab/Absorber_NN - Sample Training Data and Models
DOI: 10.15468/dl.6n6qtr
title: Occurrence Download

description: A dataset containing 5307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium acaule (L.) All., 1780"
 ]
}

 The dataset includes 5307 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138028-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axfyr1
title: Occurrence Download

description: A dataset containing 28543 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Netta erythrophthalma (Wied-Neuwied, 1833)"
 ]
}

 The dataset includes 28543 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004456-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59447
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.yy8nfg
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hylaeus tyrolensis Förster, 1871, Hymenoscyphus salicellus (Fr.) Dennis, Hymenoscyphus epiphyllus (Pers.) Rehm ex Kauffman)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 450 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0357187-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcb97a
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilosella fusca (Vill.) Arv.-Touv."
 ]
}

 The dataset includes 641 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079890-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59689
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.ctckhe
title: Occurrence Download

description: A dataset containing 1615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hylaeus variegatus (Fabricius, 1798), Hymenoscyphus caudatus (P.Karst.) Dennis)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1615 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0357188-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59442
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.hi2fpj
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((11.77734 -40.85156,40.95703 -40.85156,40.95703 -10.26562,11.77734 -10.26562,11.77734 -40.85156))",
 "TaxonKey is Pachydactylus affinis Boulenger, 1896"
 ]
}

 The dataset includes 210 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030088-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akenn7
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala venulosa Sm."
 ]
}

 The dataset includes 267 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091958-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3e9ar
title: Occurrence Download

description: A dataset containing 633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lasiobelonium nidulus (J.C.Schmidt & Kunze) Spooner, Lasiobolus diversisporus (Fuckel) Sacc.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 633 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0357216-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59407
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.4x4j4a
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "TaxonKey is Papaver dubium L."
 ]
}

 The dataset includes 387 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070938-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59446
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.