cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e231494
title: Replication data for: US Water Pollution Regulation over the Past Half Century: Burning Waters to Crystal Springs?

description: In the half century since the founding of the US Environmental Protection Agency, public and private US sources have spent nearly $5 trillion ($2017) to provide clean 
rivers, lakes, and drinking water (annual spending of 0.8 percent of US GDP in most years). Yet over half of rivers and substantial shares of drinking water systems violate 
standards, and polls for decades have listed water pollution as Americans' number one environmental concern. We assess the history, effectiveness, and efficiency of the 
Clean Water Act and Safe Drinking Water Act and obtain four main conclusions. First, water pollution has fallen since these laws were passed, in part due to their 
interventions. Second, investments made under these laws could be more cost effective. Third, most recent studies estimate benefits of cleaning up pollution in rivers 
and lakes that are less than the costs, though these studies may undercount several potentially important types of benefits. Analysis finds more positive net benefits of 
drinking water quality investments. Fourth, economic research and teaching on water pollution are relatively uncommon, as measured by samples of publications, 
conference presentations, and textbooks.
DOI: 10.3886/e231494v1
title: Replication data for: US Water Pollution Regulation over the Past Half Century: Burning Waters to Crystal Springs?

description: In the half century since the founding of the US Environmental Protection Agency, public and private US sources have spent nearly $5 trillion ($2017) to provide clean 
rivers, lakes, and drinking water (annual spending of 0.8 percent of US GDP in most years). Yet over half of rivers and substantial shares of drinking water systems violate 
standards, and polls for decades have listed water pollution as Americans' number one environmental concern. We assess the history, effectiveness, and efficiency of the 
Clean Water Act and Safe Drinking Water Act and obtain four main conclusions. First, water pollution has fallen since these laws were passed, in part due to their 
interventions. Second, investments made under these laws could be more cost effective. Third, most recent studies estimate benefits of cleaning up pollution in rivers 
and lakes that are less than the costs, though these studies may undercount several potentially important types of benefits. Analysis finds more positive net benefits of 
drinking water quality investments. Fourth, economic research and teaching on water pollution are relatively uncommon, as measured by samples of publications, 
conference presentations, and textbooks.
DOI: 10.15468/dl.shwm99
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon meridianus Highton & Peabody, 2000)"
 ]
}

 The dataset includes 549 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003855-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nckww
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isurus paucus Guitart, 1966",
 "HasCoordinate is true"
 ]
}

 The dataset includes 693 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003853-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgbrbb
title: Occurrence Download

description: A dataset containing 19651 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Estudios bióticos (Plantas, Fauna Edáfica, Anfibios y Aves) en los Complejos de páramos Tota-Bijagual-Mamapacha"
 ]
}

 The dataset includes 19651 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011873-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvqyk3
title: Occurrence Download

description: A dataset containing 962972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Deudorix diovis Hewitson, 1863, Xixuthrus nycticorax Thomson, 1877, Garceus fidelis Distant, 1893, Erthesina fullo (Thunberg, 1783), Cirrospilus phyllocnistis (Ishii, 1953), Scirpophaga nivella (Fabricius, 1794), Tetrastichus schoenobii, Nettapus coromandelianus (J.F.Gmelin, 1789), Porphyrio porphyrio poliocephalus (Latham, 1802), Macrosteles bifurcatus Beirne, 1952, Paraphlepsius fuscipennis (Van Duzee, 1892), Dorydiella floridana Baker, 1897, Limotettix elegans Hamilton, 1994, Paraphlepsius nebulosus (Van Duzee, 1892), Paraphlepsius fuscipennis fuscipennis, Hydrellia tibialis Cresson, 1917, Listronotus grypidioides (Dietz, 1889), Listronotus teretirostris J.L.LeConte, 1876, Rallus limicola Vieillot, 1819, Chilo forbesellus Fernald, Donacaula melinellus Clemens, 1861, Dolerus anticus (Klug, 1818), Macrosteles nubilus (Ossiannilsson, 1936), Macrosteles elongatus Beirne, 1952, Macrosteles slossoni (Van Duzee, 1893), Euconomelus lepidus (Boheman, 1847), Bakerella cinerea Beamer, 1945, Claviceps nigricans Tul., Myriosclerotinia scirpicola (Rehm) N.F.Buchw., Loramyces juncicola W.Weston, Nimbomollisia eriophori (L.A.Kirchn.) Nannf., Niptera pulla (W.Phillips & Keith) Boud., Pleospora palustris Berl., Rutstroemia plana D.M.Hend., Stagonospora eleocharidis Trail, Macrospora scirpicola (DC.) Fuckel, Thryogenes nereis (Paykull & G.de, 1800), Diplodina decipiens Allesch., Hydrellia americana Cresson, 1931, Calleida punctata LeConte, 1846, Pentispa fairmairei (Chapuis, 1877), Eumelea rosalia (Stoll, 1781), Mallocampa audea (Druce, 1887), Estigmene perrotteti Guérin-Méneville, 1844, Laelia bethuneana Strand, 1914, Characoma stictigrapta Hampson, 1914, Syllepte prorogata Hampson, 1912, Lopharcha erioptila (Meyrick, 1912), Encarsia septentrionalis Hayat, 1989, Encarsia dialeurodis Hayat, 1989)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 962972 records from 408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009426-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11995249
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.15468/dl.cje4q8
title: Occurrence Download

description: A dataset containing 19761 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum torvum Sw."
 ]
}

 The dataset includes 19761 records from 449 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006605-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25378/janelia.13120265.v1
title: Automatic segmentation of organelles in isotropic electron microscopy data of COS-7 cell with accompanying correlative light microscopy (jrc_cos7-11)

description: The cell interior contains hundreds of different organelle and macromolecular assemblies intricately organized relative to each other to meet any cellular demand. Obtaining a complete understanding of this organization is challenging and requires nanometer-level, three-dimensional reconstruction of whole cells. Even then, the immense size of datasets and large number of structures to be characterized requires generalizable, automatic methods. To overcome this challenge, we developed an analysis pipeline for comprehensively reconstructing and analyzing all known cellular organelles from entire cells imaged by focused ion beam scanning electron microscopy (FIB-SEM) at a near-isotropic size of 4 or 8 nm per voxel. The pipeline involved deep learning architectures trained on diverse samples for automatic reconstruction of 35 different cellular organelle classes - ranging from ER to microtubules to ribosomes - from multiple cell types. Automatic reconstructions were used to directly quantify various previously inaccessible metrics about these structures and their spatial interactions. We show that automatic organelle reconstructions can also be used to automatically register light and electron microscopy images for correlative studies. The data, computer code, and trained models are all shared through an open data and open source web platform OpenOrganelle, enabling scientists everywhere to query and further reconstruct the datasets.Sample: COS-7 cell overexpressing mEmerald-ER3 and Halo/JF525-TOMM20 (ATCC CRL-1651).Dataset ID: jrc_cos7-11EM Data DOI: 10.25378/janelia.13123385EM voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)Segmentation voxel size (nm): 4.0 x 4.0 x 4.0 (X, Y, Z)Dataset URL: S3://janelia-cosem-datasets/jrc_cos7-11/jrc_cos7-11.n5/labels/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_cos7-11Publication: Heinrich et al., 2020Segmented Organelles: ER (F825k), Mito (F750k), Mito mem (F650k)Included in Dataset: predictions, segmentations
DOI: 10.25378/janelia.16913047.v1
title: Reference isotropic 3D electron microscopy data of mouse Liver tissue (jrc_mus-liver)

description: Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations because they only visualize a single slice or a relatively small volume of the cell, respectively. We overcame these limitations by imaging whole cells and tissues via the enhanced focused ion beam scanning EM (FIB-SEM) platform at 8-nm voxels with week-long acquisition or 4-nm voxels with month-long acquisition. We used this approach to generate diverse reference 3D image datasets and hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents. These open-access data offer a foundation upon which to nucleate a new volume of high-resolution whole-cell EM images and subsequent analyses, a new paradigm that invites biologists to explore and pose questions with a fresh perspective.<br><br>This dataset captures a region within the mouse liver that includes several structures of metabolic significance. The data set contains profiles of many complete hepatocytes and their surrounding sinusoids and bile ductules. Some hepatocytes show two nuclei due to their enormous metabolic activity. Perforated endothelial cells and Kupffer cells form the lining of sinusoids. Inside each hepatocyte, many metabolic relevant organelles such as ER, mitochondria, lipid droplets and their structural relationship can be visualized in their entirety.<b>Sample:</b> Wild-type, 8 week old mouse, strain: C57BL/6 from Jackson Lab<b>Protocol: </b>Perfusion fixation with glutaraldehyde and vibratome section followed by room temperature reducing OTO staining. After dehydration and infiltration with graded ethanol and Durcupan resin, polymerize the sample in 60°C oven.<b>Contributions: </b>Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Song Pang (HHMI/Janelia), with imaging by Song Pang (HHMI/Janelia) and C. Shan Xu (HHMI/Janelia), and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<b>Dataset ID:</b> <i>jrc_mus-liver</i><b>Final voxel size (nm):</b> 8.00 x 8.00 x 8.00 (X, Y, Z)<b>Dimensions (µm):</b> 102.0 x 101.8 x 71.5 (X, Y, Z)<b>Acquisition date:</b> 2021-03-19<b>Dataset URL: </b>https://data.janelia.org/7WAgc<b>Visualization Website: </b>https://openorganelle.janelia.org/datasets/jrc_mus-liver
DOI: 10.25378/janelia.16913047
title: Reference isotropic 3D electron microscopy data of mouse liver tissue (jrc_mus-liver)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Sample:</b> Wild-type, 8 week old mouse, strain: C57BL/6 from Jackson Lab<b>Sample description:</b> Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations because they only visualize a single slice or a relatively small volume of the cell, respectively. We overcame these limitations by imaging whole cells and tissues via the enhanced focused ion beam scanning EM (FIB-SEM) platform at 8-nm voxels with week-long acquisition or 4-nm voxels with month-long acquisition. We used this approach to generate diverse reference 3D image datasets and hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents. These open-access data offer a foundation upon which to nucleate a new volume of high-resolution whole-cell EM images and subsequent analyses, a new paradigm that invites biologists to explore and pose questions with a fresh perspective.<br><br>This dataset captures a region within the mouse liver that includes several structures of metabolic significance. The data set contains profiles of many complete hepatocytes and their surrounding sinusoids and bile ductules. Some hepatocytes show two nuclei due to their enormous metabolic activity. Perforated endothelial cells and Kupffer cells form the lining of sinusoids. Inside each hepatocyte, many metabolic relevant organelles such as ER, mitochondria, lipid droplets and their structural relationship can be visualized in their entirety.<br><b>Protocol: </b>Perfusion fixation with glutaraldehyde and vibratome section followed by room temperature reducing OTO staining. After dehydration and infiltration with graded ethanol and Durcupan resin, polymerize the sample in 60°C oven.<b>Contributions: </b>Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Song Pang (HHMI/Janelia), with imaging by Song Pang (HHMI/Janelia) and C. Shan Xu (HHMI/Janelia), and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<b>Acquisition ID:</b> jrc_mus-liver<b>Final voxel size (nm):</b> 8.00 x 8.00 x 8.00 (X, Y, Z)<b>Dimensions (µm):</b> 102.0 x 101.8 x 71.5 (X, Y, Z)<b>Imaging start date:</b> 2021-03-19<b>Imaging duration (days)</b>: 8<b>Landing energy (eV)</b>: 1200<b>Imaging current (nA)</b>: 3<b>Scanning speed (MHz)</b>: 3<b>Dataset URL: </b>s3://janelia-cosem-datasets/jrc_mus-liver/jrc_mus-liver.zarr/recon-1/em/<b>Visualization Website: </b>https://openorganelle.janelia.org/datasets/jrc_mus-liver<b>Publication</b>: Conrad and Nayaran, 2023; Xu et al., 2017
DOI: 10.15468/dl.fvn75a
title: Occurrence Download

description: A dataset containing 1495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Forest species diversity and community composition in the northern Western Ghats, India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1495 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001049-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63nktb
title: Occurrence Download

description: A dataset containing 7524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arbutus xalapensis"
 ]
}

 The dataset includes 7524 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003131-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13823609
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17677729
title: PLN Mobile Tweet Raw Scraping
DOI: 10.5281/zenodo.17677730
title: PLN Mobile Tweet Raw Scraping
DOI: 10.15468/dl.9gzqmb
title: Occurrence Download

description: A dataset containing 234560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-10-27",
 "EventDate is less than or equal to 2025-11-26",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 234560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003129-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvva5b
title: Occurrence Download

description: A dataset containing 1935873 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.21_2)",
 "TaxonKey is one of (Aves [GBIF Backbone Taxonomy], Mammalia [GBIF Backbone Taxonomy], Amphibia [GBIF Backbone Taxonomy], Squamata [GBIF Backbone Taxonomy], Crocodylia [GBIF Backbone Taxonomy], Testudines [GBIF Backbone Taxonomy])"
 ]
 }
 ]
}

 The dataset includes 1935873 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003123-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17677753
title: scMicrobio
DOI: 10.5281/zenodo.17675070
title: Dataset_Online Reviews_Turkistan

description: This dataset contains online reviews on the Turkistan city and its key attractions, collected from Google Reviews, Tripadvisor, 2GIS and Yandex Maps, with 987 online reviews in total.
DOI: 10.15468/dl.v68rth
title: Occurrence Download

description: A dataset containing 2382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Specimen)",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Peromyscus melanophrys",
 "Year 1860-2025"
 ]
}

 The dataset includes 2382 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003134-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkmdyj
title: Occurrence Download

description: A dataset listing the 16618 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 16618 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003133-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p28hfp
title: Occurrence Download

description: A dataset containing 1888 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jubaea chilensis"
 ]
}

 The dataset includes 1888 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003135-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujcab7
title: Occurrence Download

description: A dataset containing 683402 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((125.12776 33.90027,127.84252 33.90027,127.84252 35.43275,125.12776 35.43275,125.12776 33.90027))",
 "Geometry POLYGON((124.74731 33.63047,127.85301 33.63047,127.85301 35.46655,124.74731 35.46655,124.74731 33.63047))"
 ]
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 683402 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003130-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddd52e
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Falco peregrinus anatum",
 "Year 1950-1970"
 ]
}

 The dataset includes 95 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003136-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g62pup
title: Occurrence Download

description: A dataset containing 14049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Crassulaceae"
 ]
}

 The dataset includes 14049 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003137-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2dgk5
title: Occurrence Download

description: A dataset containing 7556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Gesneriaceae"
 ]
}

 The dataset includes 7556 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003138-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.953gkr
title: Occurrence Download

description: A dataset containing 6235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Costa Rica, Panama, El Salvador, Guatemala, Nicaragua, Honduras, Belize)",
 "TaxonKey is Limnichidae"
 ]
}

 The dataset includes 6235 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003139-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsuh7m
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Marcgraviaceae"
 ]
}

 The dataset includes 624 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003140-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.