cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1032381
title: Kg421 Gsa-1(Ce81)I | 2009-07-14T11:00:29+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=1-y7OE93H6Q
<b>strain</b> : KG421
<b>timestamp</b> : 2009-07-14T11:00:29+01:00
<b>gene</b> : gsa-1
<b>chromosome</b> : I
<b>allele</b> : ce81
<b>strain_description</b> : gsa-1(ce81)I
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : gsa-1 (ce81)I R_2009_07_14__11_00_29__2
<b>total time (s)</b> : 299.389
<b>frames per second</b> : 25.5754
<b>video micrometers per pixel</b> : 4.54096
<b>number of segmented skeletons</b> : 6589
DOI: 10.15139/s3/nkzesw
title: AssetsAfrica
DOI: 10.15139/s3/usi7jx
title: Ghana YouthSave Experiment
DOI: 10.5061/dryad.5vg70/5
title: Wall et al. OA-Light seawater temperature and salinity

description: This data file contains a log of seawater temperature and
salinity for treatment tanks over the course of the experiment.
DOI: 10.5281/zenodo.1009182
title: Simulations Of Spontaneous Tm Domain Dimer Formation

description: Simulations of spontaneous dimer formation of 5 TM domain dimers in DLPC bilayers. Simulations are performed in the coarse-grained scheme using either standard Martini parametrization or its derivative in which the protein–protein interactions (Lennard-Jones epsilons) are downscaled by 10%. 

The tar files are named after the PDB codes of the corresponding dimers. Each tar contains 10 replicas (files numbered 1 to 10) for both scaled (S) and unscaled (U) force fields. The trajectory (.xtc, stored every 10ns, solvent omitted), energy file (.edr), and run input file (.tpr) for GROMACS are provided for each replica. The starting structures (.gro) shared by scaled and unscaled are also given. The index file (.ndx) is common for all simulations of the dimer, and the topology files (.top) are given separately for simulations using the scaled and unscaled force fields. The common simulation parameter file (.mdp) is provided. TOP.tar contains all topologies.

The scaling is achieved by adding 'p' to the bead types in the proteins. The corresponding parameters are given in the "martini_v2.2_scaled.itp" file. Note that for uniform style, the unscaled parameters are given in a similar manner in a file "martini_v2.2_unscaled.itp".

For a more thorough explanation of the purporse of the files and the simulation parameters, see the related publication:

Javanainen M, Martinez-Seara H, Vattulainen I (2017) Excessive aggregation of membrane proteins in the Martini model. PLoS ONE 12(11): e0187936. https://doi.org/10.1371/journal.pone.0187936
DOI: 10.5281/zenodo.1009183
title: Simulations Of Spontaneous Tm Domain Dimer Formation

description: Simulations of spontaneous dimer formation of 5 TM domain dimers in DLPC bilayers. Simulations are performed in the coarse-grained scheme using either standard Martini parametrization or its derivative in which the protein–protein interactions (Lennard-Jones epsilons) are downscaled by 10%. 

The tar files are named after the PDB codes of the corresponding dimers. Each tar contains 10 replicas (files numbered 1 to 10) for both scaled (S) and unscaled (U) force fields. The trajectory (.xtc, stored every 10ns, solvent omitted), energy file (.edr), and run input file (.tpr) for GROMACS are provided for each replica. The starting structures (.gro) shared by scaled and unscaled are also given. The index file (.ndx) is common for all simulations of the dimer, and the topology files (.top) are given separately for simulations using the scaled and unscaled force fields. The common simulation parameter file (.mdp) is provided. TOP.tar contains all topologies.

The scaling is achieved by adding 'p' to the bead types in the proteins. The corresponding parameters are given in the "martini_v2.2_scaled.itp" file. Note that for uniform style, the unscaled parameters are given in a similar manner in a file "martini_v2.2_unscaled.itp".

For a more thorough explanation of the purporse of the files and the simulation parameters, see the related publication:

Javanainen M, Martinez-Seara H, Vattulainen I (2017) Excessive aggregation of membrane proteins in the Martini model. PLoS ONE 12(11): e0187936. https://doi.org/10.1371/journal.pone.0187936
DOI: 10.5281/zenodo.1011372
title: Ps312 P. Pacificus Wild Isolate | 2011-07-13T15:29:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=V9Picmr01LA
<b>strain</b> : PS312
<b>timestamp</b> : 2011-07-13T15:29:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : mec-10,mec-4-L3
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on mec-10,mec-4-L3 R_2011_07_13__15_29___3___1
<b>total time (s)</b> : 7185.92
<b>frames per second</b> : 21.4133
<b>video micrometers per pixel</b> : 4.43519
<b>number of segmented skeletons</b> : 77306
DOI: 10.5281/zenodo.1011487
title: Ps312 P. Pacificus Wild Isolate | 2011-07-01T15:18:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=xI4dwr-rGfs
<b>strain</b> : PS312
<b>timestamp</b> : 2011-07-01T15:18:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : mec-4-L3
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on mec-4(u253)-L3 L_2011_07_01__15_18___3___2
<b>total time (s)</b> : 1515.85
<b>frames per second</b> : 28.7356
<b>video micrometers per pixel</b> : 4.43519
<b>number of segmented skeletons</b> : 17549
DOI: 10.5281/zenodo.1019732
title: Umbrella Sampling Simulations Of Tm Domain Dimerization

description: Umbrella sampling simulations of dimer formation of 2 TM domain dimers in DMPC/DLPC bilayers. Simulations are performed in the coarse-grained scheme using different force fields; normal Martini (N), Martini with all protein–protein interactions scaled (U) by 10% (U_10) or 20% (U_20), Martini with interactions among water-interacting beads scaled (W) either by 60% (W_60), 80% (W_80), or 90% (W_90), or the polarizable Martini (P). The original Martini is also repeated with an older set of 'common' simulation parameters (C).

The tar files are named after the PDB codes of the corresponding dimer and the type of force field employed (see above). The tar files contain the run input files (.tpr) and the corresponding simulation parameter files (.mdp) for all umbrella windows; i.e. "EPHA_U_80_18.tpr" is the run input file for the EPHA dimer with all protein–protein interactions scaled down by 20% and with a protein–protein distance restrained to 18 Å by the umbrella potential. This tpr is generated from the simulation parameter file, the topology file (here EPHA_U_80.top), the index file (here EPHA.ndx), and the initial structure (here EPHA_start_18.gro, available in the EPHA-frames.tar). The index and initial structures for the polarizable model differ, and are provided in "EPHA-P.ndx" and "EPHA-frames-P.tar", respectively. All topologies (.itp) are provided in TOP.tar.

The scaling is achieved by adding 'p' to the bead types in the proteins; either all types (scaling U) or to those more in contact with water than the membrane (scaling W) The corresponding parameters are given in the "martini_v2.2_scaled_X.itp" file. Note that for uniform style, the unscaled parameters are given in a similar manner in a file "martini_v2.2_unscaled.itp". Here, the .itp files follow the naming convention of the paper (see below) so that X=1 means downscaling of LJ epsilon by 10%, i.e. it corresponds to files with "_10".

For a more thorough explanation of the purporse of the files and the simulation parameters, see the related publication:

Javanainen M, Martinez-Seara H, Vattulainen I (2017) Excessive aggregation of membrane proteins in the Martini model. PLoS ONE 12(11): e0187936. https://doi.org/10.1371/journal.pone.0187936
DOI: 10.5281/zenodo.1019733
title: Umbrella Sampling Simulations Of Tm Domain Dimerization

description: Umbrella sampling simulations of dimer formation of 2 TM domain dimers in DMPC/DLPC bilayers. Simulations are performed in the coarse-grained scheme using different force fields; normal Martini (N), Martini with all protein–protein interactions scaled (U) by 10% (U_10) or 20% (U_20), Martini with interactions among water-interacting beads scaled (W) either by 60% (W_60), 80% (W_80), or 90% (W_90), or the polarizable Martini (P). The original Martini is also repeated with an older set of 'common' simulation parameters (C).

The tar files are named after the PDB codes of the corresponding dimer and the type of force field employed (see above). The tar files contain the run input files (.tpr) and the corresponding simulation parameter files (.mdp) for all umbrella windows; i.e. "EPHA_U_80_18.tpr" is the run input file for the EPHA dimer with all protein–protein interactions scaled down by 20% and with a protein–protein distance restrained to 18 Å by the umbrella potential. This tpr is generated from the simulation parameter file, the topology file (here EPHA_U_80.top), the index file (here EPHA.ndx), and the initial structure (here EPHA_start_18.gro, available in the EPHA-frames.tar). The index and initial structures for the polarizable model differ, and are provided in "EPHA-P.ndx" and "EPHA-frames-P.tar", respectively. All topologies (.itp) are provided in TOP.tar.

The scaling is achieved by adding 'p' to the bead types in the proteins; either all types (scaling U) or to those more in contact with water than the membrane (scaling W) The corresponding parameters are given in the "martini_v2.2_scaled_X.itp" file. Note that for uniform style, the unscaled parameters are given in a similar manner in a file "martini_v2.2_unscaled.itp". Here, the .itp files follow the naming convention of the paper (see below) so that X=1 means downscaling of LJ epsilon by 10%, i.e. it corresponds to files with "_10".

For a more thorough explanation of the purporse of the files and the simulation parameters, see the related publication:

Javanainen M, Martinez-Seara H, Vattulainen I (2017) Excessive aggregation of membrane proteins in the Martini model. PLoS ONE 12(11): e0187936. https://doi.org/10.1371/journal.pone.0187936
DOI: 10.5281/zenodo.1022791
title: Ps312 P. Pacificus Wild Isolate | 2011-06-22T12:49:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=fJDX0SCubqc
<b>strain</b> : PS312
<b>timestamp</b> : 2011-06-22T12:49:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : no food
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 off food R_2011_06_22__12_49___3___2
<b>total time (s)</b> : 2278.3
<b>frames per second</b> : 20.0
<b>video micrometers per pixel</b> : 4.57016
<b>number of segmented skeletons</b> : 17712
DOI: 10.5281/zenodo.1026048
title: Ps312 P. Pacificus Wild Isolate | 2011-06-01T12:23:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=My3dPky2hiY
<b>strain</b> : PS312
<b>timestamp</b> : 2011-06-01T12:23:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on food R_2011_06_01__12_23___3___2
<b>total time (s)</b> : 745.321
<b>frames per second</b> : 30.03
<b>video micrometers per pixel</b> : 4.57016
<b>number of segmented skeletons</b> : 20791
DOI: 10.5281/zenodo.1026049
title: Ps312 P. Pacificus Wild Isolate | 2011-06-01T12:23:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=My3dPky2hiY
<b>strain</b> : PS312
<b>timestamp</b> : 2011-06-01T12:23:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on food R_2011_06_01__12_23___3___2
<b>total time (s)</b> : 745.321
<b>frames per second</b> : 30.03
<b>video micrometers per pixel</b> : 4.57016
<b>number of segmented skeletons</b> : 20791
DOI: 10.5281/zenodo.1027505
title: Rb1263 Acr-11(Ok1345)I | 2009-07-24T13:06:09+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=n5M00npc0hU
<b>strain</b> : RB1263
<b>timestamp</b> : 2009-07-24T13:06:09+01:00
<b>gene</b> : acr-11
<b>chromosome</b> : I
<b>allele</b> : ok1345
<b>strain_description</b> : acr-11(ok1345)I
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : acr-11 (ok1345)I on food R_2009_07_24__13_06_09__8
<b>total time (s)</b> : 299.925
<b>frames per second</b> : 25.8398
<b>video micrometers per pixel</b> : 4.54096
<b>number of segmented skeletons</b> : 6433
DOI: 10.5281/zenodo.1027506
title: Rb1263 Acr-11(Ok1345)I | 2009-07-24T13:06:09+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=n5M00npc0hU
<b>strain</b> : RB1263
<b>timestamp</b> : 2009-07-24T13:06:09+01:00
<b>gene</b> : acr-11
<b>chromosome</b> : I
<b>allele</b> : ok1345
<b>strain_description</b> : acr-11(ok1345)I
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : acr-11 (ok1345)I on food R_2009_07_24__13_06_09__8
<b>total time (s)</b> : 299.925
<b>frames per second</b> : 25.8398
<b>video micrometers per pixel</b> : 4.54096
<b>number of segmented skeletons</b> : 6433
DOI: 10.5281/zenodo.1030208
title: Ps312 P. Pacificus Wild Isolate | 2011-06-01T12:53:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=lKtxC3LDtBQ
<b>strain</b> : PS312
<b>timestamp</b> : 2011-06-01T12:53:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on food R_2011_06_01__12_53___3___3
<b>total time (s)</b> : 898.061
<b>frames per second</b> : 24.0385
<b>video micrometers per pixel</b> : 4.57016
<b>number of segmented skeletons</b> : 19969
DOI: 10.5281/zenodo.1030209
title: Ps312 P. Pacificus Wild Isolate | 2011-06-01T12:53:00+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=lKtxC3LDtBQ
<b>strain</b> : PS312
<b>timestamp</b> : 2011-06-01T12:53:00+01:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : P. pacificus Wild Isolate
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Monika Leubner
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : 197 PS312 3 on food R_2011_06_01__12_53___3___3
<b>total time (s)</b> : 898.061
<b>frames per second</b> : 24.0385
<b>video micrometers per pixel</b> : 4.57016
<b>number of segmented skeletons</b> : 19969