cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12791724
title: Test data for "Imaging of cellular dynamics in vitro and in situ: from a whole organism to sub-cellular imaging with self-driving, multi-scale microscopy"

description: This repository contains test data associated with analysis code of low- and high-resolution self-driving multi-scale data from our manuscript  "Imaging of cellular dynamics in vitro and in situ: from a whole organism to sub-cellular imaging with self-driving, multi-scale microscopy"

by Stephan Daetwyler, Hanieh Mazloom-Farsibaf, Felix Y. Zhou, Dagan Segal, Etai Sapoznik, Bingying Chen, Jill M. Westcott, Rolf A. Brekken, Gaudenz Danuser and Reto Fiolka

 

Code repository: https://github.com/DaetwylerStephan/multi-scale-image-analysis

Documentation: https://daetwylerstephan.github.io/multi-scale-image-analysis/

Preprint: https://www.biorxiv.org/content/10.1101/2024.02.28.582579v1.full
DOI: 10.15468/dl.y97j2x
title: Occurrence Download

description: A dataset containing 233374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is one of (British Columbia, Alberta, SasKatchewan, Saskatchewan)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 233374 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033264-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/svc266z5y5.1
title: Assessing the Impact of Pomegranate Peel Extract Active Packaging and High Hydrostatic Pressure Processing on Color and Oxidative Stability in Sliced Nitrate/Nitrite-Reduced Iberian Dry-Cured Loins

description: Data Active Packaging+High pressure processingv+ nitrite
DOI: 10.17632/nwj854ppyd.1
title: Combined ionizing radiation exposure by gamma-rays and carbon-12 nuclei increased neurotrophic factors content and prevent age-associated decrease in the sensorimotor cortex volume of rats

description: Here, we studied the effect of combined ionizing radiation exposure (0.4 Gy γ-rays and 0.14 Gy carbon-12 nuclei) on the locomotor and exploratory activity of Wistar rats, as well as assessed the sensorimotor cortex volume by magnetic resonance imaging-based morphometry at 1 week and 7 months post-irradiation. The sensorimotor cortex tissues were processed to determine whether the behavioral and morphologic effects were associated with changes in neurotrophins content.
DOI: 10.17632/dz6hpkrzm3.2
title: Code for "Proteome adaptation in the last phase of growth contributes to lower the death rate of Escherichia coli during starvation"

description: Code used for the simulations employed in the manuscript "Gradual entry into carbon starvation decreases the death rate of Escherichia coli"

This folder contains the code that simulates the allocation strategy during the shift to starvation, as described in the manuscript. The model is based upon the FCR model, published by Erikson, Schink et al in 2017.
In this program you can simulate the dynamics of the shift experiment by fitting the time course of the growth rate with a sigmoid (as in the manuscript) and inserting the values of the parameters of the fit in the program. You can simulate the three different dynamics that we propose: the global regulation one, the targeted towards the survival sector and the targeted towards the harmful.
Abstract:
Bacterial fitness is determined both by how fast cells grow in nutrient-rich environments and by how well they survive when nutrients are depleted. However, these behaviors are not independent, since the molecular composition of non-growing cells is affected by their prior growth history. For instance, recent work observed that the death rates of Escherichia coli cultures that rapidly entered carbon starvation depend on their prior growth rates, with faster growth leading to exponentially faster death. On the other hand, it is well known that cells adapt their molecular composition as they slow down growth and enter stationary phase, which is generally believed to improve their chance of survival. Hence, the question arises to what extent this adaptation process reduces the subsequent death rate. And how does the duration of the time window during which cells are allowed to adapt determine the reduction in death rate, and thus the fitness benefit of adaptation?
Here, we study these quantitative questions by probing the adaptation of E. coli during gradual transitions from exponential growth to carbon starvation. We monitor such transitions in cultures with different initial growth conditions and measure the resulting rates of cell death after the transition. Our experiments demonstrate that cells with the opportunity to adapt their proteome composition before entering a state of starvation exhibit lower death rates compared to those that cannot, across various substrate conditions. The quantitative data is consistent with a theoretical model built on the assumption that before starvation, cells up-regulate a specific sector of the proteome, the effect of which is to decrease the death rate in energy-limiting conditions. This work highlights the influence of the non-genetic memory of a cell, specifically in the form of inherited proteome composition, on bacterial fitness. Our results emphasize that a comprehensive understanding of bacterial fitness requires quantitative characterization of bacterial physiology in all phases of their life cycle, including growth, stationary phase, and death, as well as the transitions between them. 
Differences with v1:
- fixed the values of the parameters gamma_0, tau
DOI: 10.17632/mk5rc9jfnp.2
title: Isolated and contextualized comprehension exposures have sustained effects on spoken word production: Evidence from bilingual repetition priming

description: This resource is associated with a manuscript by the same title with the same contributors. It includes stimuli and their characteristics, participant characteristics (demographic, language background, and language assessment scores), individual data files, master data files, analysis code, and information on retention interval for delayed conditions in Experiments 2a, 2b, and 3. In the folder with master files and analysis code, there is another file that provides a key to the column headings.
DOI: 10.6084/m9.figshare.23233604
title: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the North Pacific Ocean"

description: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the Pacific Ocean"
  
Ryan A. Vosbigian, Logan Wendling, Timothy Copeland, and Matthew R. Falcy
DOI: 10.6084/m9.figshare.23233604.v2
title: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the North Pacific Ocean"

description: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the Pacific Ocean"
  
Ryan A. Vosbigian, Logan Wendling, Timothy Copeland, and Matthew R. Falcy
DOI: 10.6084/m9.figshare.23233604.v1
title: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the North Pacific Ocean"

description: Data and scripts for "Cycles in adult steelhead length suggest interspecific competition in the Pacific Ocean"
  
Ryan A. Vosbigian, Logan Wendling, Timothy Copeland, and Matthew R. Falcy
DOI: 10.15468/dl.5wxgaq
title: Occurrence Download

description: A dataset containing 97416915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-123.9944 32.2529,-115.93543 32.2529,-115.93543 39.8994,-123.9944 39.8994,-123.9944 32.2529))",
 "OccurrenceStatus is Present",
 "Year 2012-2023"
 ]
}

 The dataset includes 97416915 records from 594 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033271-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/je0ckj/ubjlny
title: 121 Dell Technologies Inc..pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/asj0lm
title: 130 Mertzlufft Law.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/htettz
title: 129 PhRMA.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/lacm3r
title: 126 Joshua Sarnoff.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/nudmm9
title: 125 AAMC.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/qfnmxk
title: 128 Saidman DesignLaw Group.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/vgodlx
title: 127 IGT.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/gszygq
title: 136 Holby Abern.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/immf0v
title: 131 Alliance for Automotive Innovation.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/lbur2q
title: 133 Askeladden.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/q3azq4
title: 134 Todd Van Thomme.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/xdnvn4
title: 132 U.S. Chamber of Commerce, Global Innovation Policy Center.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/ys5ezx
title: 135 Stephen Mosher.pdf

description: :unav
DOI: 10.7910/dvn/ucmcdx/rfmyie
title: scml.tab

description: :unav
DOI: 10.7910/dvn/je0ckj/e0joii
title: 140 Genentech.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/hkemt3
title: 141 Innovation Alliance.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/ldobft
title: 139 Natural Products Association.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/mbybbn
title: 142 Lori Pressman.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/mfqgmj
title: 138 The High Tech Inventors Alliance.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/nr4jjs
title: 137 Chad Rafetto.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/ibndi3
title: 143 Dana Stangel.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/m9htq8
title: 145 Juniper.pdf

description: :unav
DOI: 10.7910/dvn/je0ckj/wpmm5b
title: 144 Robert Rutkowski.pdf

description: :unav
DOI: 10.7910/dvn/opqocu/pdeapr
title: CES21_Common_Questions.pdf

description: CES 2021 questionnaire.
DOI: 10.7910/dvn/opqocu/uooinn
title: CES21_Common_OUTPUT.tab

description: CES 2021 dataset.
DOI: 10.7910/dvn/aywx0y/amzlba
title: CHMI_epi_data.csv

description: A description of the CHMI outcome after the challenge
DOI: 10.7910/dvn/aywx0y/cbhrzn
title: AKinyua_Plasmodium_alciparum_variant_Codebook.pdf

description: Contains variable descriptions
DOI: 10.7910/dvn/aywx0y/qwxmxf
title: breadth_inhibition_domains.csv

description: Cumulative anti-VSA antibody levels (measured against 6 P. falciparum isolates), antibody levels to two PfEMP! domains (DC4, DC13) and percentage binding inhibition (ability of an individuals plasma sample to inhibit the interaction between PfEMP1 domains and ICAM1)
DOI: 10.7910/dvn/aywx0y/8m52zu
title: Test_isolates.csv

description: Anti-VSA antibody levels measured against six P. falciparum isolates
DOI: 10.7910/dvn/aywx0y/aszler
title: Multivariate_analysis_Table1_2.R

description: :unav
DOI: 10.7910/dvn/aywx0y/bh6ryq
title: correlation matrix_Sup_fig2.R

description: :unav
DOI: 10.7910/dvn/aywx0y/ibqjwr
title: isolates_boxplots_figure1.R

description: :unav
DOI: 10.7910/dvn/aywx0y/ie1bky
title: Survival_analysis_figure2.R

description: :unav
DOI: 10.7910/dvn/aywx0y/kf5n7h
title: Univariate_cox_regression-Table1_2.R

description: :unav
DOI: 10.7910/dvn/dxvcfd/k0ln4b
title: statistics_sweden.do

description: :unav
DOI: 10.7910/dvn/dxvcfd/oqexg4
title: ambulance.do

description: :unav
DOI: 10.7910/dvn/sf14tu/j7yfgu
title: Paustyan_TPG_Online_Appendix.pdf

description: :unav
DOI: 10.7910/dvn/sf14tu/uoee0w
title: Paustyan_TPG_R_Script.R

description: :unav
DOI: 10.7910/dvn/l4vq5o
title: Supplementary Figure 1

description: This is Supplementary Figure 1 for the manuscript "Social support correlates with glucocorticoid concentrations in wild African elephant orphans" (currently in review), showing distribution of sample numbers according to the time variant covariates of lactating, pregnancy, age, time of day, minutes spent on the ground, NDVI measures, years spent without mother, and strongylid eggs per gram.
DOI: 10.7910/dvn/l4vq5o/b063xc
title: Supplementary Figure 1.pdf

description: :unav
DOI: 10.7910/dvn/s3cz3i
title: Supplementary Figure 2

description: Supplementary Figure 2 for the manuscript "Social support correlates with glucocorticoid concentrations in wild African elephant orphans" (currently in review), showing time series graphs of individual elephants' fecal glucocorticoid metabolite (fGCM) concentrations, or individual fGCM profiles. The elephants are organized according to core group/family. You can see that glucocorticoids oscillate across the population according to season.
DOI: 10.7910/dvn/6botbh
title: Supplementary Figure 3

description: This is Supplementary Figure 3 for the manuscript "Social support correlates with glucocorticoid concentrations in wild African elephants" (currently in review), showing results for the model including strongylid fecal egg counts.There were some samples without fecal egg counts from when the counter was away from the field, so a subset of n = 446 samples out of the total n = 496 samples was used to asses whether a correlation existed between strongylid egg counts and glucocorticoid concentrations.
DOI: 10.7910/dvn/cferta
title: The Effect of Interpersonal Communication Interventions to Increase Tetanus Toxoid Immunisation Coverage for Pregnant Women

description: Raw data of knowledge, attitudes, and behaviour of respondents regarding TT immunisation
DOI: 10.15468/dl.qhvryt
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akodon affinis (J.A.Allen, 1912)"
 ]
}

 The dataset includes 263 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033042-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/rltzos
title: Data for paper 'Not Simply a Circle: A New You-are-here Symbol Promotes the Usability of Subway Station Layout'

description: There are two parts of data for this paper, namely accuracy and eye tracking data. We used them to generate the results in the paper.
DOI: 10.15468/dl.687p7s
title: Occurrence Download

description: A dataset containing 126915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chile",
 "OccurrenceStatus is Present",
 "TaxonKey is Tachycineta leucopyga (Meyen, 1834)"
 ]
}

 The dataset includes 126915 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033036-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5j7vy
title: Occurrence Download

description: A dataset containing 358845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-09-28",
 "EventDate is less than or equal to 2024-10-28",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 358845 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032969-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q829c9
title: Occurrence Download

description: A dataset containing 60187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Abudefduf saxatilis (Linnaeus, 1758)"
 ]
}

 The dataset includes 60187 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033043-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/bq3w96
title: Supplementary discussion

description: This is supplementary discussion corresponding to the manuscript "Social support correlates with fecal glucocorticoid concentration in wild African elephant orphans," currently in review. It discusses variables that did not show a significant (defined here according to whether the 95% confidence interval of the Bayesian estimate overlapped zero) correlation with fecal glucocorticoid metabolite concentrations, mostly with respect to what has been found in previous studies.
DOI: 10.7910/dvn/ptyqoq
title: Uptake Pattern of Training Programs over Two Decades at an International Ophthalmic Training Institute in India

description: Recognizing the urgent need to improve eye care services to address the increasing eye care burden globally, the World Health Organization (WHO) and International Agency for the Prevention of Blindness (IAPB) together launched a global initiative “VISION 2020: The Right to Sight” in 1999 with the goal to eliminate avoidable blindness by the year 2020. This initiative identified disease control, human resource development and infrastructure development as the three pillars to achieve the desired outcomes. The global action plan of WHO (2014 – 2019) also has emphasized the need of trained workforce in all the WHO regions for ensuring comprehensive eye care services. The overall shortage of workforce warrants a robust strategy to ensure sustainable training programmes for all cadres of eye care professionals. Recognizing this, Aravind Eye Care System (AECS) in India has developed an extensive set of training programmes over the past 40 years, for supplementary skills development for all members of the eye care team. The aim of this study was to evaluate the uptake pattern of long term and short-term structured certificate training programs offered at AECS during the last two decades (2000 – 2019).
DOI: 10.15468/dl.ev4b5p
title: Occurrence Download

description: A dataset containing 14402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hydrochoerus hydrochaeris (Linnaeus, 1766)",
 "Year 1385-2024"
 ]
}

 The dataset includes 14402 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033044-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x3ka2
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lutjanus purpureus (Poey, 1866)"
 ]
}

 The dataset includes 139 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033046-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7w68d7
title: Occurrence Download

description: A dataset containing 369039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is January",
 "TaxonKey is Strigiformes",
 "Year 1994-2024"
 ]
}

 The dataset includes 369039 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032987-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/bhn64t
title: serum expression of lncRNA GAS5

description: Abstract 
The aim of the study was to explore the serum expression of long non-coding RNA (lncRNA) growth arrest-specific transcript 5 (GAS5) in Mycoplasma pneumoniae pneumonia (MPP) and its effect on LAMPS-induced apoptosis and inflammation. Totally, 56 children with MPP (MPP group) and 56 healthy children (NC group) were enrolled. The lncRNA GAS5 expression was measured by qRT-PCR. Serum levels of tumor necrosis factor α (TNF-α) and interleukin-6 (IL-6) were detected using ELISA, and the high mobility family protein B1 (HMGBl) was detected by qRT-PCR. The methylated binding protein 2 (MECP2) was inhibited by gene silencing, and the expression of MECP2, TNF-α, IL-6, HMGBl, p-p65, and p-IκBα was measured. The lncRNA GAS5 and TNF-α, IL-6, and HMGBl in the peripheral blood of the MPP group was positively correlated (P&lt;0.05). The expression of TNF-α, IL-6, HMGBl, and lncRNA GAS5 showed a positive correlation with that of LAMPS. The GAS5-siRNA group showed increased cell survival rate compared with the scrambled-RNAi group (P&lt; 0.05), while showed decreased apoptosis and cell death rates (P&lt; 0.05). Additionally, the expression of IL-6, TNF-α, HMGBl, p-p65, and p-IκBα was significantly reduced (P&lt; 0.05). lncRNA GAS5 is highly expressed in the serum of children with MPP and inhibits LAMPS-induced apoptosis and alveolar macrophage inflammation.
DOI: 10.7910/dvn/cmrd77
title: SARS-CoV-2 Antibody after Vaccination

description: SARS-CoV-2 antibody levels in serial samples from vaccinated individuals at three time points; 3 weeks after the first/second dose, and before the third dose, with four assays
DOI: 10.15468/dl.tk6xb7
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eretmobrycon dahli"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033048-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mnfcp
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "GadmGid is ECU.4_1",
 "TaxonKey is Pristimantis buckleyi (Boulenger, 1882)"
 ]
}

 The dataset includes 70 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033047-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/81pbj9
title: Replication data for Chemical nature of Hg and Cu sulfides

description: Hg and Cu sulfide analysis
DOI: 10.15468/dl.ftgu6d
title: Occurrence Download

description: A dataset containing 1206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-72.67575 7.41103,-72.59949 7.4117,-72.5987 7.46637,-72.67868 7.46637,-72.67833 7.41469,-72.67575 7.41103))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (NE, LC, DD, NT, EW)"
 ]
}

 The dataset includes 1206 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033049-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.