cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4p72d8q/7
title: Dataset S7 Productivity Data

description: File containing productivity scores for each experimental female. For more information please see the legend in the spreadsheet.
DOI: 10.5061/dryad.c0pv774/2
title: README
DOI: 10.5061/dryad.c0pv774/3
title: TableS2_SuppInfo_transcriptome_statistics

description: Excel file containing results of transcriptome assemblies using Trinity v2.2
DOI: 10.5061/dryad.c0pv774/4
title: Transcriptome Analysis
DOI: 10.5061/dryad.c0pv774/5
title: Alignments
DOI: 10.5061/dryad.h2v2398/10
title: Human footprint 1990-2015

description: Human footprint aggregates the extent of built environments, crop land, pasture land, human population density, night-time lights, railways, roads, and navigable waterways. It is included into Ecological Vulnerability in this same data package. Global gridded data set with a spatial resolution of 5 arc-min, annual data from 1990 to 2015, and scaled from 0 to 1. Based on http://doi.org/10.1038/sdata.2018.4
DOI: 10.5061/dryad.h2v2398/11
title: README_Varis
DOI: 10.5061/dryad.h2v2398/7
title: Water scarcity 1990-2015

description: Water scarcity is an indicator for sustainability of water resources for both humans and nature. As a composite of freshwater freshwater resources and anthropogenic water use, it represents the hydrological compexity of an area. Water stress is a combination of water stress and water shortage, see Equation 1 in the article. Global gridded data set with a spatial resolution of 5 arc-min, annual data from 1990 to 2015, and scaled from 0 to 1. Based on http://doi.org/10.1038/srep38495 and http://doi.org/10.5194/gmd-9-175-2016
DOI: 10.5061/dryad.h2v2398/8
title: Resilience 1990-2015

description: In this study, resilience indicates "the capacity of a system to absorb disturbance and reorganize while undergoing change so as to retain essentially the same function, structure, identity, and feedbacks" (Adger et al., 2011). It indicates the relationship between Adaptive Capacity and Ecological Vulnerability in this data package. The higher the ecological vulnerability, the more adaptive capacity is needed to ensure resilience. Global gridded data set with a spatial resolution of 5 arc-min, annual data from 1990 to 2015. The data is scaled from -1 to 1, and zero indicates resilience of global mid-range.
DOI: 10.5061/dryad.h2v2398/9
title: Basin-scale resilience for 1990 and 2015

description: In this study, resilience indicates "the capacity of a system to absorb disturbance and reorganize while undergoing change so as to retain essentially the same function, structure, identity, and feedbacks" (Adger et al., 2011). It indicates the relationship between Adaptive Capacity and Ecological Vulnerability in this data package. The higher the ecological vulnerability, the more adaptive capacity is needed to ensure resilience. Global basin-scale data in vector format for years 1990 and 2015. The data is scaled from -1 to 1, and zero indicates resilience of global mid-range.
DOI: 10.17632/8mnzrdbwg7.1
title: Appendices for: Testing Ordinary Meaning: An Experimental Assessment of What Dictionary Definitions and Linguistic Usage Data Tell Legal Interpreters

description: Empirical appendices
DOI: 10.17632/932zxbfrbf.1
title: Data for: Updating and Sensitivity Analysis of Ground Motion Prediction Equation (GMPE) using NGA dataset

description: filtered data of NGA-west2
DOI: 10.17632/xm8zwv9m6z.1
title: Data for: Trace element geochemistry of magnetite and pyrite and sulfur isotope geochemistry of pyrite from the Thanewasna Cu-(Au) deposit, western Bastar Craton, Central India: Implication for ore genesis.
DOI: 10.5061/dryad.006bn4k/10
title: MCMCglmm_dataset.GEM

description: The file is the csv for the MCMCglmm analysis which looked at if any one individual was particularly influential in the playbacks. All the information from the main dataset is included as well as the additional columns which state for each playback which individuals were included in the playback track.
DOI: 10.5061/dryad.006bn4k/3
title: 2019Intercoder.reliability

description: Number of recruits recorded from a subset of randomly chosen videos by Jenny R. Coomes and an independent coder.
DOI: 10.5061/dryad.006bn4k/6
title: 2019.Withoutrepeatcalling

description: Subset of data without playback tracks that had repeated calls in them. For supplementary analysis
DOI: 10.5061/dryad.006bn4k/8
title: Recruits to scold call playbacks (main dataset)

description: This file includes the number of jackdaws recruited to playbacks of one, three and five individuals calling. It is the main dataset for analysis. Also included is the README text file for all the datafiles associated with the paper.
DOI: 10.5061/dryad.006bn4k/9
title: R code for analysis of all data associated with number of recruits to jackdaw playbacks

description: This file is the R code for all the analysis associated with the paper on number of individuals recruited to playbacks of one, three and five callers. It includes model checks, the IT approach to model selection (dredge), overdispersion checks and tests with the responsive scolding playbacks excluded. It also includes post hoc analysis on playbacks without repeat calls, tests between GS3 and GS5 and the MCMCglmm analysis for looking at influence of individual callers.
DOI: 10.5061/dryad.0k3fv2j/4
title: Mourlam & Orliac_Ossicles Protocetid_ESM_Table S1

description: Table S1. Measurements of the middle ear hearing parameters
DOI: 10.5061/dryad.0k3fv2j/5
title: Mourlam & Orliac_Ossicles Protocetid_ESM_Document S1

description: Content Text S1. Incudomallear complex orientation; Text S2. Chorda tympani hypothetical pathway; Figure S1. Spatial “incudomallear-centred” referential; Figure S2. Bone thickness maps of UM-KPG-M 73; Figure S3. Tympanic membrane area estimation; Figure S4. Stapes - Comparative plate; Figure S5. Incus - Comparative plate; Figure S6. Malleus reconstruction and comparison; Figure S7. Chorda tympani location; Figure S8. Malleus - Comparative plate; Figure S9. Middle ear’s functional profile comparison.
DOI: 10.5061/dryad.1rd4hc7/2
title: Supplemental Tables
DOI: 10.5061/dryad.2h412kh/1
title: MEDIP_ANALYSIS_COMMANDS

description: Example of the commands used for MEDIP analysis and obtaining rpkm values
DOI: 10.5061/dryad.2h412kh/2
title: Sequence data aligned to the T. bicolor genome

description: Sequence data for each individual included in the study aligned to the reference genome
DOI: 10.5061/dryad.6c8d45m/1
title: IMa2p output file

description: Output file from IMa2p
DOI: 10.5061/dryad.6c8d45m/2
title: DNAsp output

description: Output from DNAsp analysis for 6 nuclear intron loci and one mitochondrial locus (ND2)
DOI: 10.5061/dryad.6c8d45m/3
title: BEAST combined runs

description: Log and tree files from combined three runs in BEAST.
DOI: 10.5061/dryad.6c8d45m/5
title: BPP analysis

description: BPP analysis including summary of runs and parameters, BPP output and MCMC files, and R code for producing gdi figures.
DOI: 10.5061/dryad.c0pv774/6
title: Trees

description: IQ-TREE ML and ASTRAL-III trees
DOI: 10.5061/dryad.c0pv774/7
title: MCMCTree

description: Settings files for MCMCTree runs
DOI: 10.17632/9crbzcs97z.1
title: Data for: Effects of pH on the incubation and early development of fish species with different reproductive strategies

description: The data from my article has the measurements made on eggs and larvae. It has the measured limnological variables.
DOI: 10.17632/f5bt6yz6cd.1
title: Data for: Wearing your Heart on your Screen: Investigating Congruency-effects in Autonomic Responses and their Role in Interoceptive Processing during Biofeedback

description: Data-sets for two studies using cardiac biofeedback and measuring HF-HRV. The main analysis in the originally published article was on the following data sets: Experiment 1 : HALF_TRIALS_EXP1.xlsx and HALF_ACCURACY1.xlsx Experiment 2: EXP2.xlsx For the unique code of variables, manipulation and covariates please refer to the methods and result sections in the original article. We also provide the reproducible APA manuscript saved as a RMD file: "Hodossy_Tsakiris_after_reviews" which has several requirements. Please refer to: https://crsh.github.io/papaja_man/introduction.html#getting-started for help with the set up. The analysis script is accessible as an R source file "Hodossy_Tsakiris_analysis" Make sure that all required files from the repository are downloaded and are in your current working directory. Files are available on GitHub: https://github.com/HoLilla/Hodossy-Tsakiris-2019 For more help on the data sets please e-mail with the corresponding author.
DOI: 10.17632/f6yrbk4cm3.1
title: FeynMaster: A plethora of Feynman tools

description: FeynMaster is a multi-tasking software for particle physics studies. By making use of already existing programs (FeynRules, QGRAF, FeynCalc), FeynMaster automatically generates Feynman rules, generates and draws Feynman diagrams, generates amplitudes, performs both loop and algebraic calculations, and fully renormalizes models. In parallel with this automatic character, FeynMaster allows the user to manipulate the generated results in Mathematica notebooks in a flexible and consistent way. It can be downloaded in https://porthos.tecnico.ulisboa.pt/FeynMaster/.
DOI: 10.17632/g47f2f5gxh.1
title: Data for: Study of the permeability in the Opalinus clay series (Mont Terri - Switzerland) using the steady state method in Hassler cell

description: Please find below the data used in this study (measurements, plot parameters, hydraulic conductivity...)
DOI: 10.17632/kfdy77762r.3
title: Substance use disorders: incidence, prevalence, deaths and DALY's, in 1990-2017

description: Datasets from Global Burden of Diseases Study 2019. Mortality, morbidity, prevalence, from use of tobacco, alcohol, opiates, cannabis, and other drugs, the aggregated indicator (Substance use disorders) in 1990-2017. ICD10 codes: I42.6, K70.03, Z72.0, F10-19. Territories: Global, Eastern Europe, Central Europe, Western Europe, Belarus, Russia. Methods. We used indicators of mortality, morbidity, prevalence, and years of life lost, taking into account the DALY disability from tobacco, alcohol, opiates, cannabis, and other drugs. Indicators of harmful health effects from psycho-active presented from 1990 to 2017. Variables standardized by age and sex. Keywords: global burden of diseases, alcohol, substance use, psychoactive substances.
DOI: 10.17632/mfb879986h.1
title: Data for: Fluid inclusion and stable isotopic studies of thermochemical sulfate reduction: Upper Permian and Lower Triassic gasfields, northeast Sichuan Basin, China

description: Raw data and processed data for the paper named Fluid inclusion and stable isotopic studies of thermochemical sulfate reduction: Upper Permian and Lower Triassic gasfields, northeast Sichuan Basin, China.
DOI: 10.17632/r4dxy3r8fy.2
title: COVID-19 case dataset and its relationship with population density of Kazakhstan
DOI: 10.17632/rvxygp79cs.1
title: Data for: DEVELOPMENT OF A SUITABILITY ASSESSMENT MODEL FOR THE CULTIVATION OF INTERTIDAL MACROALGAE IN THE UNITED STATES

description: Spreadsheet of data values from sampling points and water quality values obtained from the water samples at the sampling points in the study
DOI: 10.5061/dryad.63n980b/1
title: Baer et al 2019 Ecological Applications Data File

description: Data correspond to subplot and whole-plot analyses of the “Prairie Restoration Heterogeneity Plots” located at the Konza Prairie Long Term Ecological Research site in Manhattan, KS USA. Subplot light and nitrogen availability from 2013-2017, subplot plant diversity and species composition from 2013-2017, plot diversity and species composition from 1998-2017, and plant trait data are located in four different tabs (pages) within the Excel file.
DOI: 10.5061/dryad.6c8d45m/10
title: BEAST run 2

description: BEAST replicate run 2 files including xml file, log file, and trees.
DOI: 10.5061/dryad.6c8d45m/11
title: BEAST run 3

description: BEAST replicate run 3 files including xml file, log file, and trees.
DOI: 10.5061/dryad.6c8d45m/4
title: Phased nuclear intron and mtDNA alignments

description: Phased nuclear intron DNA alignments, mitochondrial DNA (ND2) alignment, and BEAST taxon file.
DOI: 10.5061/dryad.6c8d45m/6
title: ML trees for PHRAPL input

description: Maximum likelihood trees for each of 6 nuclear intron loci and one mitochondrial locus (ND2) produced in RAxML for input in PHRAPL analysis. Each file is in newick format.
DOI: 10.5061/dryad.6c8d45m/7
title: Unphased DNA sequence alignments in FASTA format

description: Unphased DNA sequence alignments for 6 nuclear intron loci and one mitochondrial DNA sequence (ND2) in FASTA format.
DOI: 10.5061/dryad.6c8d45m/8
title: Nuclear intron DNA allele files

description: Nuclear intron genotype files for input into STRUCTURE
DOI: 10.5061/dryad.6c8d45m/9
title: BEAST run 1

description: BEAST replicate run 1 files including xml file, log file, and trees.
DOI: 10.5061/dryad.jq85fg8/1
title: data
DOI: 10.17632/9crbzcs97z.2
title: Data for: Effects of pH on the incubation and early development of fish species with different reproductive strategies

description: The data from my article has the measurements made on eggs and larvae. It has the measured limnological variables.
DOI: 10.17632/gn3kw2zsxs.1
title: Initial sample of ceramic TP-2 pegmatite

description: In this study a working sample of 85.2 g was taken, obtained after the fourth quartering of the initial sample of ceramic TP-2 pegmatite.
DOI: 10.17632/tsm28774yj.1
title: Data for: No-arbitrage determinants of credit spread curves under the unconventional monetary policy regime in Japan

description: The file includes data used in Okimoto and Takaoka (2019)
DOI: 10.5061/dryad.6c8d45m/12
title: Rockhopper Penguin sampling list

description: List of sampling locations and collectors for Rockhopper Penguin samples.
DOI: 10.5061/dryad.6ck4218/1
title: Acoustic telemetry of grey reef sharks in Micronesia

description: VEMCO vrl files, cleaned and aggregated in R. Each row represents one detection by one of 20 tagged grey reef sharks. Data columns include Station Name for each receiver, Latitude and Longitude for each receiver, Date.Time (the date and time of each transmitter detection), Detections (dummy variable equal to 1 for ease of summarization), Transmitter_ID (the Transmitter unique identification number), and Source (where the shark was originally tagged).
DOI: 10.5061/dryad.gr5768f/1
title: Hom_Single_Photon.tar

description: This file contains the solution data for the homogenized cone, single photon trials reported by the authors in the manuscript. The files are saved in matlab.
DOI: 10.5061/dryad.gr5768f/2
title: Hom_Ten_Photon.tar

description: This file contains solution data for the homogenized cone, ten photon trials reported by the authors in their manuscript. The files are saved in matlab.
DOI: 10.5061/dryad.gr5768f/3
title: NHom.tar

description: This file contains solution data for the nonhomogenized cone, single and ten photon trials reported by the authors in their manuscript. This includes the current drop as a function of time. However, due to size limitations the cGMP and Ca2+ solution data over the 3D mesh is not included. Those datasets are available upon request to the authors. The Mesh geometry for the NHOM 3D model is included here but not the mass and stiffness matrices owing again to size limitations. Those matrices are also available upon request to the authors. The files are saved in matlab.
DOI: 10.5061/dryad.gr5768f/4
title: NHom_sol.tar

description: This file contains data samples of the numerically predicted concentrations of cGMP and Ca2+ over the nonhomogenized cone mesh.
DOI: 10.5061/dryad.gr5768f/5
title: PDE_Inhib.tar

description: This file contains the data sheets, current totals and current drops for the simulations which increase the beta_dark parameter for comparing to diseases that are caused by incomplete PDE inhibition.
DOI: 10.5061/dryad.gr5768f/6
title: Fig_Data.tar

description: For convenience, the quantities used to generate the figures shown in the main paper -- such as corresponding current drops, HOM and NHOM solution samples -- are collected here in one archive.
DOI: 10.5061/dryad.hk29749/1
title: Stress resistance data from half-sib full-sib breeding experiments.

description: Stress resistance data (cold recovery time (min), heat knockdown time (min), desiccation resistance (hs) and wing size (mm) of female and male Drosophila melanogaster originating from a half-sib full-sib breeding experiments done on three populations (C, B and M).
DOI: 10.5061/dryad.vr300p0/1
title: GTseq_311_41

description: vcf file containing genotypic data for 41 Western rattlesnakes at 311 SNPs generated via GT-seq
DOI: 10.5061/dryad.vr300p0/2
title: RADseq_9568_41

description: vcf file containing genotypic data for 41 Western rattlesnakes at 9568 SNPs generated via RADseq
DOI: 10.5441/001/1.n157b4n8/1
title: Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers (Conenna et al. 2019)

description: Conenna I, López-Baucells A, Rocha R, Ripperger S, Cabeza M (2019) Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers. Movement Ecology 7:27. doi:10.1186/s40462-019-0170-8
description: Background: Bats are among the most successful desert mammals. Yet, our understanding of their spatio-temporal dynamics in habitat use associated with the seasonal oscillation of resources is still limited. In this study, we have employed state-of-the-art lightweight GPS loggers to track the yellow-winged bat Lavia frons in a desert in northern Kenya to investigate how seasonality in a desert affects the a) spatial and b) temporal dimensions of movements in a low-mobility bat. Methods: Bats were tracked during April–May 2017 (rainy season) and January–February 2018 (dry season) using 1-g GPS loggers. Spatial and temporal dimensions of movements were quantified, respectively, as the home range and nightly activity patterns. We tested for differences between seasons to assess responses to seasonal drought. In addition, we quantified home range overlap between neighbouring individuals to investigate whether tracking data will be in accordance with reports on territoriality and social monogamy in L. frons. Results: We obtained data for 22 bats, 13 during the rainy and 9 during the dry season. Home ranges averaged 5.46 ± 11.04 ha and bats travelled a minimum distance of 99.69 ± 123.42 m/hour. During the dry season, home ranges were larger than in the rainy season, and bats exhibited high activity during most of the night. No apparent association with free water was identified during the dry season. The observed spatial organisation of home ranges supports previous observations that L. frons partitions the space into territories throughout the year. Conclusions: Our results suggest that, in low-mobility bats, a potential way to cope with seasonally harsh conditions and resource scarcity in deserts is to cover larger areas and increase time active, suggesting lower cost-efficiency of the foraging activity. Climate change may pose additional pressures on L. frons and other low-mobility species by further reducing food abundances.
DOI: 10.5441/001/1.n157b4n8/2
title: Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers (Conenna et al. 2019)-reference-data

description: Conenna I, López-Baucells A, Rocha R, Ripperger S, Cabeza M (2019) Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers. Movement Ecology 7:27. doi:10.1186/s40462-019-0170-8
description: Background: Bats are among the most successful desert mammals. Yet, our understanding of their spatio-temporal dynamics in habitat use associated with the seasonal oscillation of resources is still limited. In this study, we have employed state-of-the-art lightweight GPS loggers to track the yellow-winged bat Lavia frons in a desert in northern Kenya to investigate how seasonality in a desert affects the a) spatial and b) temporal dimensions of movements in a low-mobility bat. Methods: Bats were tracked during April–May 2017 (rainy season) and January–February 2018 (dry season) using 1-g GPS loggers. Spatial and temporal dimensions of movements were quantified, respectively, as the home range and nightly activity patterns. We tested for differences between seasons to assess responses to seasonal drought. In addition, we quantified home range overlap between neighbouring individuals to investigate whether tracking data will be in accordance with reports on territoriality and social monogamy in L. frons. Results: We obtained data for 22 bats, 13 during the rainy and 9 during the dry season. Home ranges averaged 5.46 ± 11.04 ha and bats travelled a minimum distance of 99.69 ± 123.42 m/hour. During the dry season, home ranges were larger than in the rainy season, and bats exhibited high activity during most of the night. No apparent association with free water was identified during the dry season. The observed spatial organisation of home ranges supports previous observations that L. frons partitions the space into territories throughout the year. Conclusions: Our results suggest that, in low-mobility bats, a potential way to cope with seasonally harsh conditions and resource scarcity in deserts is to cover larger areas and increase time active, suggesting lower cost-efficiency of the foraging activity. Climate change may pose additional pressures on L. frons and other low-mobility species by further reducing food abundances.
DOI: 10.17632/bxmvp7gcch.1
title: Data for: On the carbon isotope excursion across the Wuchiapingian–Changhsingian transition: A regional event in the lower Yangtze region, South China?

description: Geochemical data for Caicun, Changqiao, Niushan in lower Yangtze region, South China.
DOI: 10.17632/jhs4ydkyvb.4
title: Data for: Reconstructing South China in the Mesoproterozoic and its role in the Nuna and Rodinia supercontinents

description: Table S1 Zircon U–Pb analytical results for the Mesoproterozoic igneous rocks and sediments in the western Yangtze Block Table S2 Zircon Lu-Hf analytical results for the samples from Kunyang Group of the western Yangtze Block Table S3 Major oxides, trace elemental and Sr-Nd isotopic analytical results the Mesoproterozoic igneous rocks in the western Yangtze Block Table S4 Sources for data compiled in Figure 2a
DOI: 10.17632/mbs7xjpns9.1
title: Data for: Hirnantian glaciation dynamics revealed in the Baltoscandian Basin

description: XRF, carbon isotopes, mean grain size
DOI: 10.17632/mj79t2st87.1
title: Data for: Impacto da introdução da vacina tetra viral na morbimortalidade por varicela nas macrorregiões Brasileiras.

description: Tabela com dados provenientes do DATASUS que descrevem os óbitos e o número de internações por varicela além da população total de todas as unidades federativas brasileiras entre os anos 2010-2016. Descrição da análise estatística (Poisson) realizada no sistema Stata 12.0
DOI: 10.17632/p8652snxx5.3
title: Data for: In silico multi-scale analysis of the effect of resorption cavities on peri-implant bone after undersized drilling technique.

description: Database of micro- and macro-scale analysis
DOI: 10.17632/pkyftf65r2.1
title: Dataset for atmospheric transport of nutrients during a harmful algal bloom

description: The data presented in this article are related to the research article entitled “Atmospheric transport of nutrient matter during a harmful algal bloom”[1]. The data provides the harmful algal blooms event with an area greater than or equial to 1000km2 in the East China Sea during 2006. These data also provide the concentration of nutrients (nitrate, ammonium and FeⅡ) in atmosphere and their deposited flux in the East China Sea prior to the harmful algal bloom on May 3-8, 2006. They can be helpful for analyzing the source of nutrients causing the harmful algal blooms.