cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9wptsr
title: Occurrence Download

description: A dataset containing 24465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tegula Lesson, 1833"
 ]
}

 The dataset includes 24465 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027070-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd3qk8
title: Occurrence Download

description: A dataset containing 723 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Strigamia acuminata Leach, 1815",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 723 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027072-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjfaeg
title: Occurrence Download

description: A dataset containing 176119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Epilobium parviflorum Schreb.)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 176119 records from 838 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027064-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bybeep
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Achenium depressum (Gravenhorst, 1802)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 133 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027073-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48612/msupe/gara-der6-xrp2
title: Материалы эмпирического исследования "Типология представлений о взрослении в юношестве"

description: Представлена база данных результатов исследования, связанного с трансформацией восприятия процесса взросления, проведенного в марте-мае 2024 года. В исследовании приняли участие подростки, юноши и девушки в возрасте от 14 до 23 лет (M = 18). Использовались авторская методика «Взросление» (Н.П. Шилова).
DOI: 10.34770/sqxq-eq44
title: Data for: Persistent hepatitis B virus and HIV coinfections in dually humanized mice engrafted with human liver and immune system

description: Chronic hepatitis B (CHB), caused by hepatitis B virus (HBV), remains a
 major medical problem. HBV has a high propensity for progressing to
 chronicity and can result in severe liver disease, including fibrosis,
 cirrhosis and hepatocellular carcinoma. CHB patients frequently present
 with viral coinfection, including HIV and hepatitis delta virus. About 10%
 of chronic HIV carriers are also persistently infected with HBV which can
 result in more exacerbated liver disease. Mechanistic studies of
 HBV-induced immune responses and pathogenesis, which could be
 significantly influenced by HIV infection, have been hampered by the
 scarcity of immunocompetent animal models. Here, we demonstrate that
 humanized mice dually engrafted with components of a human immune system
 and a human liver supported HBV infection, which was partially controlled
 by human immune cells, as evidenced by lower levels of serum viremia and
 HBV replication intermediates in the liver. HBV infection resulted in
 priming and expansion of human HLA-restricted CD8+ T cells, which acquired
 an activated phenotype. Notably, our dually humanized mice support
 persistent coinfections with HBV and HIV which opens opportunities for
 analyzing immune dysregulation during HBV and HIV coinfection and
 preclinical testing of novel immunotherapeutics.
DOI: 10.15468/dl.a38cqn
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Mycetoporus splendidus (Gravenhorst, 1806)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 125 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027075-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x685g
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Quedius nitipennis (Stephens, 1833)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 279 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027076-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vahrmd
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aleochara intricata Mannerheim, 1830",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 197 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027077-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pm2d2g
title: Occurrence Download

description: A dataset containing 10829 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gyps indicus (Scopoli, 1786)"
 ]
}

 The dataset includes 10829 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027078-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aq4bpq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amarochara forticornis (Lacordaire, 1835)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027080-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e47zk2
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Chinese Institute of Biology - Chinese Academy of Sciences",
 "GadmGid is CHN.5_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 571 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027079-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh5t54
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "StateProvince is Norte De Santander",
 "VerbatimScientificName is Tremarctos ornatus"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027081-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.574z78
title: Occurrence Download

description: A dataset containing 342855 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Latvia)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Literature Occurrence, Specimen, Unknown evidence, Machine Observation)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020",
 "HasCoordinate is true"
 ]
}

 The dataset includes 342855 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027058-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxgjbq
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Callicerus rigidicornis (Erichson, 1839)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 119 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027082-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12706697
title: Subsurface monitoring of Arbuckle Fluid Pressure

description: This is the result of a pressure monitoring project in the Oklahoma Arbuckle Scoop-Stack from August 2016 to March 2020.  The data is stored in an h5 file format, and there is an accompanying python script that can be used to decompress the data.
DOI: 10.15468/dl.sstt6x
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Eretmobrycon Fink, 1976"
 ]
}

 The dataset includes 270 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027084-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13961380
title: Mastodon example data set - 10 tracked phallusia mammillata embryos

description: This dataset originates from the Phallusia mammillata embryonic development dataset, which was published on figshare.



https://figshare.com/projects/Phallusiamammillata_embryonic_development/64301.



The dataset is described in the following publication:



Léo Guignard et al., Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis. Science369, eaar5663(2020). DOI:10.1126/science.aar5663



The dataset has been converted to Mastodon file format using these scripts:



Astec file format to CSV: https://github.com/GuignardLab/LineageTree/blob/master/src/LineageTree/legacy/export_csv.py

CSV to Mastodon file format: https://github.com/mastodon-sc/mastodon-deep-lineage/blob/master/src/test/java/org/mastodon/mamut/astec/AstecReader.java



Limitations resulting from the conversion:



Image data is not included in the projects. This would require additional effort. However, it is probably not necessary for the intended use cases (tests of lineage clustering, lineage registration, and Blender visualization).

Only datasets Pm01 – Pm10 have been converted.

The cell names were missing for Pm11-Pm13. To handle this, the conversion scripts would need to be adapted. Thus, these datasets are not included.

The uploaded data for Pm14 is faulty on figshare. Thus it is not included.

Half-Pm1, U0126PM1 and U0126PM2 do not contain lineages or coordinates. Thus, these datasets are not included.

When opening the Mastodon projects, a message appears stating that the image data is missing. It can be chosen, to open the project without image data ("dummy image data"). This must be confirmed. After that, it should work.
DOI: 10.5281/zenodo.13961381
title: Mastodon example data set - 10 tracked phallusia mammillata embryos

description: This dataset originates from the Phallusia mammillata embryonic development dataset, which was published on figshare.



https://figshare.com/projects/Phallusiamammillata_embryonic_development/64301.



The dataset is described in the following publication:



Léo Guignard et al., Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis. Science369, eaar5663(2020). DOI:10.1126/science.aar5663



The dataset has been converted to Mastodon file format using these scripts:



Astec file format to CSV: https://github.com/GuignardLab/LineageTree/blob/master/src/LineageTree/legacy/export_csv.py

CSV to Mastodon file format: https://github.com/mastodon-sc/mastodon-deep-lineage/blob/master/src/test/java/org/mastodon/mamut/astec/AstecReader.java



Limitations resulting from the conversion:



Image data is not included in the projects. This would require additional effort. However, it is probably not necessary for the intended use cases (tests of lineage clustering, lineage registration, and Blender visualization).

Only datasets Pm01 – Pm10 have been converted.

The cell names were missing for Pm11-Pm13. To handle this, the conversion scripts would need to be adapted. Thus, these datasets are not included.

The uploaded data for Pm14 is faulty on figshare. Thus it is not included.

Half-Pm1, U0126PM1 and U0126PM2 do not contain lineages or coordinates. Thus, these datasets are not included.

When opening the Mastodon projects, a message appears stating that the image data is missing. It can be chosen, to open the project without image data ("dummy image data"). This must be confirmed. After that, it should work.
DOI: 10.15468/dl.hxmnzq
title: Occurrence Download

description: A dataset containing 388464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Eupatorium cannabinum L.)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 388464 records from 1388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027074-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn47sp
title: Occurrence Download

description: A dataset containing 3135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vallisneria spiralis L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 3135 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255972-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b53wpw
title: Occurrence Download

description: A dataset containing 113406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "GadmGid is USA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "Year 2000-2023"
 ]
}

 The dataset includes 113406 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000343-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yn4c6
title: Occurrence Download

description: A dataset containing 1863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Kassina Girard, 1853"
 ]
}

 The dataset includes 1863 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162759-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbje3u
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphragmus ladakiana Al-Shehbaz",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256535-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5fwhc
title: Occurrence Download

description: A dataset containing 15232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microtus californicus (Peale, 1848)"
 ]
}

 The dataset includes 15232 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000341-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9dt46
title: Occurrence Download

description: A dataset containing 6219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is GBR.3_1",
 "TaxonKey is Corylus L.",
 "Year 1960-2000"
 ]
}

 The dataset includes 6219 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170184-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5ehcd
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptocypris konkoureensis Howes & Teugels, 1989"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339830-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uyscp
title: Occurrence Download

description: A dataset containing 22858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((69.07032 32.397476, 69.07032 48.88410666666667, 35.62496433333334 48.88410666666667, 35.62496433333334 32.397476, 69.07032 32.397476))",
 "EventDate is 2021-11-01,2021-11-30"
 ]
}

 The dataset includes 22858 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010061-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbqvgm
title: Occurrence Download

description: A dataset containing 1007474 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Benin"
 ]
}

 The dataset includes 1007474 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0405852-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5u37m5
title: Occurrence Download

description: A dataset containing 14085 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fraxinus americana L."
 ]
}

 The dataset includes 14085 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162761-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k24tvd
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Glycine soja Siebold & Zucc."
 ]
}

 The dataset's 1 records were derived from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162727-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.