cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19961504.v1
title: Supplementary Material for: Comparative neuroanatomy of the mechanosensory subgenual organ complex in the Peruvian stick insect, Oreophoetes peruana

description: The subgenual organ complex in the leg of Polyneoptera (Insecta) consist of several chordotonal organs specialised to detect mechanical stimuli from substrate vibrations and airborne sound. In stick insects (Phasmatodea), the subgenual organ complex contains the subgenual organ and the distal organ located distally to the subgenual organ. The subgenual organ is a highly sensitive detector for substrate vibrations. The distal organ has a characteristic linear organisation of sensilla, and is likely also to respond to substrate vibrations. Despite its unique combination of sensory organs, the neuroanatomy of the subgenual organ complex of only very few species of stick insects has been investigated so far. Phylogenomic analysis has established for Phasmatodea the early branching of the sister groups Oriophasmata, the Old World phasmids, and Occiophasmata, the New World phasmids. The species studied for the sensory neuroanatomy, including the Indian stick insect Carausius morosus, belong to the Old World stick insects. Here, the neuroanatomy of the subgenual organ complex is presented for a first species of the New World stick insects, the Peruvian stick insect Oreophoetes peruana. To document the sensory organs in the subgenual organ complex and their innervation pattern, and to compare these between females and males of this species and to the Old World stick insects, axonal tracing is used. This study documents the same sensory organs for O. peruana, subgenual organ and distal organ, as in other stick insects. Between the sexes of this species, there are no notable differences in the neuroanatomy of their sensory organs. The innervation pattern of tibial nerve branches in O. peruana is identical to other stick insect species, although the innervation pattern of the subgenual organ by a single tibial nerve branch is simpler. The shared organisation of the subgenual organ complex in both groups of Neophasmatodea (Old World and New World stick insects) indicates the sensory importance of the subgenual organ but also of the distal organ. Some variation exists in the innervation of the chordotonal organs in O. peruana though a common innervation pattern can be identified. The findings raise the question for the ancestral neuroanatomical organisation and innervation in stick insects.
DOI: 10.17632/nszczd8r8m
title: Data for: A global comparison of soil erosion associated with land use and climate type

description: This is a database containing runoff and soil loss rates of sheet and rill erosion under natural rainfall across the world.
DOI: 10.6084/m9.figshare.4785880.v2
title: seedling

description: plant seedling
DOI: 10.15468/dl.rhpq53
title: Occurrence Download

description: A dataset containing 4204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Xanthorhoe designata (Hufnagel, 1767)"
 ]
}

 The dataset includes 4204 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009214-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ykyrb5rcy8
title: The Frequencies of Allele Distribution of CYP2C9 and CYP2C19 Gene Polymorphisms in Healthy Papuan Population, Indonesia

description: Revealed that in Papua subjects CYP2C9*2 and CYP2C19*17 alleles were absent while in 17 percent of the population CYP2C9*3 allele frequency was.
DOI: 10.6084/m9.figshare.13473102.v1
title: Field predation rates and biomass densities of predators and prey across taxa and scales

description: We collected 32 studies reporting field kills, mainly for higher terrestrial vertebrates, over an extended period of time (typically a year or more), and estimated biomass densities and mass-specific metabolic rates of predators and prey. See details and meta-data in the Supplementary Appendices of the preprint in References.<br>
DOI: 10.17632/wm7p38cnwf
title: GeoHealth_Pb_dataset

description: Dataset used in publication of Peters et al. (2022)
DOI: 10.6084/m9.figshare.25012550.v1
title: Supplementary Material for: Brain functional correlates of recall of life events in medication-naïve adolescents with borderline personality disorder

description: Introduction: Recall of autobiographical events has been found to be impaired in borderline personality disorder (BPD), but few studies have examined if this impairment has brain functional correlates. This study evaluated brain functional alterations during autobiographical recall, using medication-naive adolescent patients to avoid potential confounding effects of treatment. Methods: 32 adolescent female patients with BPD who were never-medicated and without psychiatric comorbidity and 33 matched healthy females underwent fMRI while they viewed individualized cue words that evoked autobiographical memories. Control conditions included viewing non-memory-evoking cues and a low-level baseline (cross fixation). Results: During autobiographical recall, in comparison to the low-level baseline, the BPD patients showed increased brain activity in regions including the posterior hippocampus, the lingual and calcarine cortex and the precuneus compared to the healthy controls. The BPD patients also showed a failure to de-activate the right dorsolateral prefrontal cortex during autobiographical recall. No patient-control differences were found when memory-evoking words were compared to non-memory-evoking words. Discussion/Conclusions: This study finds evidence of hippocampal/lingual/calcarine/precuneus hyperactivation to stimuli that evoke autobiographical memories in patients with BPD. As the changes were seen in never-treated patients without other comorbidities, they could be considered intrinsic to the disorder. Our study also adds to existing evidence for failure of de-activation in BPD, this time outside the default mode network.
DOI: 10.17632/gmdsws36sy
title: Supplementary Data: Assessing the robustness and implications of econometric estimates of climate sensitivity

description: This repository shares research data supplementary to "Assessing the robustness and implications of econometric estimates of climate sensitivity". 

Authors: Trude Storelvmo, Menghan Yuan , Thomas Leirvik , Kari Alterskjærd , Peter C.B. Phillips, and Christopher J. Smith
Repository structure:
- Scripts
 - 1_test_cointegration.R conducts cointegration tests.
 - 2_estimate_cmip6_TCS.R estimates TCR.
 - 3_add_uncertainty.R imposes uncertainty to observational TCR.
 - FigX.R generates figures in paper.
- Data
 - Input data folder
- Output
 - Output data folder
DOI: 10.17632/6rz5pjy8pz
title: Marine heatwaves as selective filters on the behaviour of native and non-native invertebrates

description: Experimental Setup
Animals were acclimated to 18°C for five days before temperature manipulation. The "Heat-wave group" underwent a controlled temperature increase:
Phase 1: Temperature raised to 27°C over 24 hours (using two 300W heaters) and maintained for 3 days.
Phase 2: Further increased to 32°C over 24 hours and held for 3 additional days.
Total experiment duration: 11 days . Behavioral and morphometric data (including mortality) were recorded.

Behavioral Assays
Conducted in duplicate for both Heat-wave and Control groups, with 1-day intervals between replicates to minimize stress. Each replicate included three consecutive tests:
Locomotion Measurement: 
Tracked distance moved (m), average speed (m/s), and edge preference (thigmotaxis; risk-aversion proxy) via GoPro Hero 11 cameras. Time-lapse recording (1 frame/5 sec over 60 min) analyzed with Tracker software (calibrated with graph paper).
Spontaneous Behavior:
Undisturbed 5-min observations (24 fps) of: Crawling (exploration/foraging), Folding (U-shaped defensive posture), Rearing (response to stress), Veering (180° direction change)
Response to Disturbance:
Simulated threat (soft plastic stick applied dorsally) followed by 5-min filming.
Measured cerata relaxation time (defensive alertness indicator; BORIS software).

Mortality & Morphometrics
Body length tracked daily (ImageJ); calculated % shortening between phases.
Mortality recorded daily; deceased individuals removed.
DOI: 10.17632/jwffz6f9py
title: Data for: Why are smarter individuals more prosocial? A study on the mediating roles of empathy and moral identity
DOI: 10.17632/vtfkv8c3nw
title: MicroCT scan of iodine stained scorpion

description: Scorpion stained with iodine for visualization of soft tissues.
DOI: 10.17632/x2998wdc95
title: Dataset for the article “Data for a simulation of metal cutting with cutting fluid using the Finite-Pointset-Method”

description: The dataset provides measured and simulated data of dry and wet orthogonal turning processes. In addition, the complete simulation model is published.
DOI: 10.17632/d8r3zxfsry
title: Collecting Tweets related to Myanmar Coup keywords from Feb 1 to Feb 28, 2021.

description: This dataset encompasses tweets collected between February 1st and February 28th, 2021, that are relevant to the Myanmar coup. Keywords associated with the coup were used to filter and gather tweets, ensuring a comprehensive capture of public discourse and reactions on social media during this period. The dataset is valuable for analyzing public sentiment, information dissemination, and the impact of social media during significant political events.
DOI: 10.17632/vxrmfch8h9
title: Radiocarbon and U-series age data of deep-sea corals

description: There are 3 dataset in this contribution. Table S1 contains radiocarbon data of the Galápagos deep-sea coral together with data from the low latitude Atlantic intermediate waters. Table S2 contains U-Th age data of the deep-sea corals from the low latitude Atlantic. Table S3 contains the test of the coral radiocarbon age reproducibility between AMS in UCI and Bristol
DOI: 10.17632/wpy54dw6t7
title: Subsets according time windows for Coffee Leaf Rust Incidence modeling. Paper: Discovering weather periods and crop properties favorable for coffee rust incidence from feature selection approaches

description: The climate dataset was processed to generate four data subsets corresponding to four time windows: 3, 4, 7, and 14 consecutive days. We use the concept of time windows to generate consecutive subperiods of each climate variable within the main period of 14 days before the date of prediction. (DP). This process generates new attributes corresponding to each variable. The number of periods depends on the size of the window e.g., the window of 4 consecutive days generates 11 new sub-periods for each climatic variable. The index that characterizes it indicates the days covered by the window e.g., tMin11-8 corresponds to the minimum temperature between days 11 and 8 before DP. We called the generated subsets 3D, 4D, 7D, 14D. Each subset had 439 instances, and the dimension depended on window size: 14D had 13 variables (8 related to climate), 7D had 69 features (64 related to climate), 4D had 93 features (88 related to climate), and 3D had 101 features (96 related to climate). The target variable was predicted Coffee Leaf Rust Incidence (pCLRI), and the predictors were the rest of the experiment variables: current CLRI (cCLRI), shade, host growth (hGrowt), management (mgmt) and climatic variables: maximum (tMax) and minimum (tMin) air temperature, average (tAvg) air temperature calculated over the day, average (hAvg) and minimum (hMin) relative humidity, daily precipitation (pre). The data in the files did not contain null data. The thermal amplitude (tAmp), which represents the difference between the maximum and minimum temperatures, and the characterization of each day as a rainy day or not (precipitation greater or equal to 1 mm) (rDay)
DOI: 10.17632/ysmt4kcjtn
title: Data for "petro-mineralogical controls on seismic attenuation in volcanic rock samples"

description: Here we include the initial dataset acquired to develop the study presented in the article “Petro-mineralogical controls on seismic attenuation in volcanic rock samples” File ‘Data’ = Petrophysical properties of 25 core samples of volcanic rocks from cored boreholes on The Big Island of Hawai’i. Folder ‘Waveforms’= Folder 'raw': seismic ultrasonic waveforms recorded on each sample. Time in seconds and amplitude in voltage. Acquired using shear-type transducers with a piezoelectric crystal of 13 mm and a characteristic frequency of 1 MHz. The pulse repetition frequency was set at 100 Hz and the pulser voltage at 400 V using an ultrasonic square wave pulser/receiver unit (Olympus 5077PR). Folder 'Filtered': seismograms filtered (Butterworth bandpass between 20-800 kHz) used to compute Qc. Folder ‘Optical Images’= optical images under plane polarised light. The samples were imaged using a Zeiss Axio Imager M2m optical imaging system, with a magnification of 2.5x. Folder ‘uCT’= 2D slice images generated from the micro-CT scanner (Versa XRM 500 from Zeiss-XRadia) with a resolution of 4.2527 μm for the sample 1H, and 22 μm for samples 9H, 11H, 14H and 18H..
DOI: 10.4121/uuid:c30a32cb-0b28-492d-a997-77dd002e14b4
title: Three Magnolia species distribution data

description: This dataset includes the spatial distribution information of three Magnolia species (Magnolia biondii, Magnolia denudata and Magnolia sprengeri). The recorded information includes species name, longitude and latitude. This dataset could be used as base data for the conservation of these three Magnolia species.
DOI: 10.17632/g7bstyfpp5
title: Supplementary Material for "Prevalence of Depression among Children, Adolescents, and Adults with Hidradenitis Suppurativa"

description: Supplementary material for the article titled "Prevalence of Depression among Children, Adolescents, and Adults with Hidradenitis Suppurativa" by Shari Wright, Andrew Strunk, and Amit Garg.
DOI: 10.17632/9gr6pxhfjm
title: H-wave – A Python package for the Hartree-Fock approximation and the random phase approximation

description: H-wave is an open-source software package for performing the Hartree–Fock approximation (HFA) and random phase approximation (RPA) for a wide range of Hamiltonians of interacting fermionic systems. In HFA calculations, H-wave examines the stability of several symmetry-broken phases, such as anti-ferromagnetic and charge-ordered phases, in the given Hamiltonians at zero and finite temperatures. Furthermore, H-wave calculates the dynamical susceptibilities using RPA to examine the instability toward the symmetry-broken phases. By preparing a simple input file for specifying the Hamiltonians, users can perform HFA and RPA for standard Hamiltonians in condensed matter physics, such as the Hubbard model and its extensions. Additionally, users can use a Wannier90-like format to specify fermionic Hamiltonians. A Wannier90 format is implemented in RESPACK to derive ab initio Hamiltonians for solids. HFA and RPA for the ab initio Hamiltonians can be easily performed using H-wave. In this paper, we first explain the basis of HFA and RPA, and the basic usage of H-wave, including download and installation. Thereafter, the input file formats implemented in H-wave, including the Wannier90-like format for specifying the interacting fermionic Hamiltonians, are discussed. Finally, we present several examples of H-wave such as zero-temperature HFA calculations for the extended Hubbard model on a square lattice, finite-temperature HFA calculations for the Hubbard model on a cubic lattice, and RPA in the extended Hubbard model on a square lattice.
DOI: 10.6084/m9.figshare.27011431.v1
title: Typhlocybinae Fungi ITS

description: Fungi raw sequences from various insect species of the Typhlocybinae subfamily, ITS amplicons, Illumina NovaSeq 6000
DOI: 10.6084/m9.figshare.5644498.v1
title: Preliminary molecular characterization of a proinflammatory and nociceptive molecule from the Echinometra lucunter spines extracts

description: Abstract Background Sea urchins are animals commonly found on the Brazilian shoreline, being Echinometra lucunter the most abundant species. Accidents caused by E. lucunter have been reported as one of the most frequent in Brazil, and are characterized by intense pain and inflammation, consequence of spine puncture in the skin. In order to characterize such toxic effects, we isolated one molecule that caused inflammatory and nociceptive effects. Methods E. lucunter specimens were collected without gender distinction. Spines were removed and molecules were extracted, fractionated by RP-HPLC and assayed for inflammatory and nociceptive activity, in a biological-driven fractionation way, until the obtainment of one active molecule and its subsequent analysis by mass spectrometry (MS and MS/MS). For inflammation, intravital microscopy was performed on the mouse cremaster muscle, in order to evaluate rolled, adherent and migrating leukocytes. Paw edema was also evaluated. For the nociceptive activity, the paw pressure test was performed in rats. Results One molecule could be isolated and related to the inflammatory and nociceptive activity. Regarding inflammation, increase in adherent and migrating cells was observed in the cremaster muscle after the administration of the molecule. Corroborating the inflammatory response, paw edema was also observed, although only in 20% of controls and 20 min after injection. Additionally, this molecule was able to decrease significantly the pain threshold, characterizing hyperalgesia. This molecule was analyzed by mass spectrometry, and according to the exact molecular mass, isotopic distribution and fragmentation profile, it was possible to propose the molecular formula C29H48N3O10. Conclusions One isolated molecule from the spine extract of E. lucunter is able to elicit inflammation and hypernociception in animal models, which is in agreement with the effects observed in sea urchin accidents.
DOI: 10.17632/tz7pjtbpmk
title: Schilling et al_2021

description: Submission Schilling et al_original image dataset
DOI: 10.17632/v2jzcyjn8v
title: NNPred: Deploying neural networks in computational fluid dynamics codes to facilitate data-driven modeling studies

description: Data-driven modeling has contributed significantly to the field of computational fluid dynamics (CFD), but integrating machine-learning (ML) models into a CFD workflow still remains to be a challenging task. In this paper, we introduce an interface library for the deployment of ML models in CFD codes. The library supports multiple ML backends with binary interface compatibility and provides flexible data input/output (I/O) methods to match the type and layout of the data between ML models and CFD codes. For the convenience of CFD users, the library provides application programming interfaces for two widely used languages (i.e., C++ and Fortran), simplifying the deployment and prediction to only a few lines of code. Two data-driven modeling cases are demonstrated, along with the implementation details of the library in open-source CFD codes (i.e., OpenFOAM and CFL3D). The first case presents a simple heat-transfer problem with assumed experimental data of unknown emissivity, where the basic use of the library in OpenFOAM is demonstrated by solving a diffusive equation with the source term modeled by various ML algorithms. The second case discusses the modeling of turbulence in channel flow, and applies an ML-integrated closure model in both OpenFOAM and CFL3D. In both software, the ML-RANS model reproduces almost identical results to the reference data and favorable extrapolation performance is maintained. In addition, the parallel efficiency is compared with the traditional closure model under the same homogeneous parallel architecture, and only limited additional cost is imposed by running the ML prediction. This library could benefit CFD researchers in rapidly testing data-driven models in their CFD solvers.
DOI: 10.17632/347p98c2rd
title: Dataset for Machine Learning: Explicit All-Sky Image Features to Enhancing Indirect Solar Photovoltaic Forecasting

description: This dataset contains a set of features explicitly extracted from all-sky images using image processing techniques. The features and global solar irradiance are provided for each all-sky image, with a temporal resolution of 1 minute, spanning three complete years (2014 to 2016). The dataset can be used as a benchmark and for studies on Artificial Intelligence methods applied to solar irradiance prediction and photovoltaic energy generation. The dataset descriptor is detailed in the study titled ‘Dataset for Machine Learning: Explicit All-Sky Image Features to Enhance Solar Irradiance Prediction’, DOI: https://doi.org/10.3390/data9100113.

This dataset uses data derived from: Pedro, H. T. C., Larson, D. P., & Coimbra, C. F. M. (2019). A comprehensive dataset for the accelerated development and benchmarking of solar forecasting methods. Journal of Renewable and Sustainable Energy, 11(3), 036102. https://doi.org/10.1063/1.5094494. The dataset is related with the paper Maciel, J.N.; Ledesma, J.J.G.; Ando Junior, O.H. Hybrid Prediction Method of Solar Irradiance Applied to Short-Term Photovoltaic Energy Generation. Renewable and Sustainable Energy Reviews 2024, 192, 114185, doi:10.1016/j.rser.2023.114185.
DOI: 10.6084/m9.figshare.735902.v3
title: Guide to Shortened URLs in Bik & Goldstein 2013

description: This is a supplemental table that provides a key to the shortened URLs in: Bik HM, Goldstein MC (2013) An Introduction to Social Media for Scientists. PLoS Biol 11(4): e1001535. doi:10.1371/journal.pbio.1001535 We have provided files in both CSV and XSLX formats.
DOI: 10.17632/syr3j7fh3p
title: Aberrant structural connectivity of the triple network system in Borderline Personality Disorder is associated with behavioral dysregulation

description: Core symptoms of Borderline Personality Disorder (BPD) are associated to aberrant connectivity of the triple network system (salience network [SN], default mode network [DMN], executive control network [ECN]). While functional abnormalities are widely reported, structural connectivity (SC) and anatomical changes have not yet been investigated. Here, we explored the triple network’s SC, structure, and its association with BPD clinical features.
Sixty BPD and 26 healthy controls (HC) underwent a multidomain neuropsychological and multimodal MRI (diffusion- and T1-weighted imaging) assessment. Metrics (fractional anisotropy [FA], mean diffusivity [MD], cortical thickness) were extracted from SN, DMN, ECN (triple network), and visual network (control network) using established atlases. Multivariate general linear models were conducted to assess group differences in metrics and associations with clinical features.
DOI: 10.17632/ssj5f46k9x
title: Wholesale Gemstone Beads |

description: Manufacturer and Wholesaler of Loose & Semi-Precious Gemstone Beads Supplier from India.
Overall, gemstone beads can be used in a wide variety of ways, and their versatility and beauty make them a popular choice for many people. When purchasing gemstone beads online, it is important to ensure that they are of good quality and are sourced ethically.
DOI: 10.17632/vmwymcjxxw
title: Diagnostic fidelity of a GC sensor system in an inception cohort of children with suspected inflammatory bowel disease

description: GC-sensor data (.asc file format) from the stool samples of children with a confirmed diagnosis of IBD (n=72) and age/sex matched non-IBD controls (n=72) with other gastrointestinal conditions. There is also data files generated from 37 IBD stool samples 3-months following treatment.