cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/8fe04755e8895f2a0100bc22402440db
title: Journey North - Barn Swallow observations by volunteer community scientists across Central and North America (2000-2020)

description: This data package contains Barn Swallow migration data consisting of 3,836 total observational reports from 2000 - 2020 across North America and Central America. These data were collected by 1,320 community scientists for Journey North, a crowdsourced participatory science program of the University of Wisconsin-Madison Arboretum. The Journey North Barn Swallow Project is an ongoing study of Barn Swallow phenology conducted at broad spatial and temporal scales. Since 2000, community scientists have tracked first arrival dates of Barn Swallows (Hirundo rustica) in the United States. Observers also provide estimates of the number of birds sighted. However, observers do not follow standardized methods for counting species observed. Observers do not observe at set times of the day, do not repeat observations regularly, and are not required to provide the length of time during which a specified number of species observed were counted. Therefore, it is recommended that this dataset be analyzed to indicate presence not abundance. Researchers are encouraged to read the rich information provided by volunteers in their comments. These comments provide qualitative information about observational reports. Researchers are also encouraged to refer to submitted photographs that also provide context for observational reports. The Journey North Barn Swallow Project dataset is hosted by the University of Wisconsin-Madison Shared Web Hosting Service.
DOI: 10.5281/zenodo.6968367
title: ICB_Hugo_RNAseq

description: Processed RNAseq data used for ICB_Hugo data object. Publication: https://pubmed.ncbi.nlm.nih.gov/26997480/. Raw data obtained from https://www.ebi.ac.uk/ena/browser/view/PRJNA312948?show=reads. Processed with https://github.com/LupienLab/kallisto_snakemake/tree/main/Run_Kallisto Dataset details: https://predictio.ca/dataset/5.
DOI: 10.5281/zenodo.6968366
title: ICB_Hugo_RNAseq

description: Processed RNAseq data used for ICB_Hugo data object. Publication: https://pubmed.ncbi.nlm.nih.gov/26997480/. Raw data obtained from https://www.ebi.ac.uk/ena/browser/view/PRJNA312948?show=reads. Processed with https://github.com/LupienLab/kallisto_snakemake/tree/main/Run_Kallisto Dataset details: https://predictio.ca/dataset/5.
DOI: 10.5281/zenodo.6968394
title: Demographic details, as well as questionnaire responses

description: Demographic details, as well as questionnaire responses
DOI: 10.6073/pasta/b6fe30b4a8b9a761cd809469ef6356c8
title: Journey North - Red-winged blackbird observations by volunteer community scientists across Central and North America (1999-2020)

description: This data package contains Red-winged Blackbird migration data consisting of 9,352 total observational reports from 1999 - 2020 across North and Central America. These data were collected by 4,647 community scientists for Journey North, a crowdsourced participatory science program of the University of Wisconsin-Madison Arboretum. The Journey North Red-winged Blackbird Project is an ongoing study of Red-winged Blackbird phenology conducted at broad spatial and temporal scales. Since 1999, community scientists have tracked first arrival dates and breeding and feeding behavior as well as the onset of fall migration and presence of Red-winged blackbird species throughout the winter months in the United States. The focal species is the Red-winged Blackbird (Agelaius phoeniceus). Observers also provide estimates of the number of birds sighted. However, observers do not follow standardized methods for counting species observed. Observers do not observe at set times of the day, do not repeat observations regularly, and are not required to provide the length of time during which a specified number of species observed were counted. Therefore, it is recommended that this dataset be analyzed to indicate presence not abundance. Researchers are encouraged to read the rich information provided by volunteers in their comments. These comments provide qualitative information about observational reports. Researchers are also encouraged to refer to submitted photographs that also provide context for observational reports. The Journey North Red-winged Blackbird Project dataset is hosted by the University of Wisconsin-Madison Shared Web Hosting Service.
DOI: 10.5281/zenodo.6968389
title: ICB_Jung_RNAseq

description: Processed RNAseq data used for ICB_Jung data object. Publication: https://pubmed.ncbi.nlm.nih.gov/31537801/. Raw data obtained from https://www.ebi.ac.uk/ena/browser/view/PRJNA557841?show=reads. Processed with https://github.com/LupienLab/kallisto_snakemake/tree/main/Run_Kallisto Dataset details: https://predictio.ca/dataset/23.
DOI: 10.5281/zenodo.6968388
title: ICB_Jung_RNAseq

description: Processed RNAseq data used for ICB_Jung data object. Publication: https://pubmed.ncbi.nlm.nih.gov/31537801/. Raw data obtained from https://www.ebi.ac.uk/ena/browser/view/PRJNA557841?show=reads. Processed with https://github.com/LupienLab/kallisto_snakemake/tree/main/Run_Kallisto Dataset details: https://predictio.ca/dataset/23.
DOI: 10.5281/zenodo.6968269
title: VCF file created by Synteny and Rearrangement Indicator software

description: VCF file created by Synteny and Rearrangement Indicator software for the rat reference genome mRatBN7.2 and the SHRSP genome assembly
DOI: 10.5281/zenodo.6968268
title: VCF file created by Synteny and Rearrangement Indicator software

description: VCF file created by Synteny and Rearrangement Indicator software for the rat reference genome mRatBN7.2 and the SHRSP genome assembly
DOI: 10.6073/pasta/935978d401d9b947865a9744db90f417
title: Journey North - American Robin observations by volunteer community scientists across Central and North America (1996-2020)

description: This data package contains American Robin migration data consisting of 39,260 total observational reports from 1996 - 2020 across North and Central America. These data were collected by 17,619 community scientists for Journey North, a crowdsourced participatory science program of the University of Wisconsin-Madison Arboretum. The Journey North American Robin Project is an ongoing study of American Robin phenology conducted at broad spatial and temporal scales. Since 1996, community scientists have tracked first arrival dates and breeding and feeding behavior as well as the onset of fall migration and presence of American Robin species throughout the winter months in the United States. The focal species is the American Robin (Turdus migratorius). Observers also provide estimates of the number of birds sighted. However, observers do not follow standardized methods for counting species observed. Observers do not observe at set times of the day, do not repeat observations regularly, and are not required to provide the length of time during which a specified number of species observed were counted. Therefore, it is recommended that this dataset be analyzed to indicate presence not abundance. Researchers are encouraged to read the rich information provided by volunteers in their comments. These comments provide qualitative information about observational reports. Researchers are also encouraged to refer to submitted photographs that also provide context for observational reports. The Journey North American Robin Project dataset is hosted by the University of Wisconsin-Madison Shared Web Hosting Service.
DOI: 10.6073/pasta/3c94a675eb2e870ed47d0c0d53df7f0f
title: Journey North - Tulip observations by volunteer community scientists across North America (1996-2020)

description: This data package contains tulip phenology data consisting of 21,148 total observational reports from 1996 - 2020 across North America. These data were collected by 6,645 community scientists for Journey North, a crowdsourced participatory science program of the University of Wisconsin-Madison Arboretum. The Journey North Tulip Test Garden Project is an ongoing study of tulip phenology conducted at broad spatial and temporal scales. Since 1996, community scientists have tracked planting, emergence, and blooming of tulips (Tulipa L.) in the United States. Most observations should be of the Red Emperor Tulip, but not all observations can be validated as this species. Researchers are encouraged to read observer comments to confirm tulip species. Observers also provide estimates of the number of tulips sighted. However, observers do not follow standardized methods for counting species observed. Observers do not observe at set times of the day, do not repeat observations regularly, and are not required to provide the length of time during which a specified number of species observed were counted. Therefore, it is recommended that this dataset be analyzed to indicate broad phenological information. Researchers are encouraged to read the rich information provided by volunteers in their comments. These comments provide qualitative information about observational reports. Researchers are also encouraged to refer to submitted photographs that also provide context for observational reports. The Journey North Tulip Test Garden Project dataset is hosted by the University of Wisconsin-Madison Shared Web Hosting Service.
DOI: 10.6084/m9.figshare.17100314.v2
title: Dataset of Appropriate cesarean rates using Robson’s Ten-Group Classification System in a Brazilian private practice

description: The dataset is retrospective and was collected from an Excel spreadsheet filled in by the researcher at the time of clinical procedures for monitoring pregnancies and deliveries, being manipulated and anonymized by her, with the confidentiality of the participants being preserved, in compliance with the General Personal Data Protection Law (Brazil) 13709/2018. The inclusion criteria were: women who sought prenatal care and childbirth with the intention of a spontaneous vaginal delivery with appropriate use of technology, with single or multiple pregnancies, who gave birth in a hospital to a newborn or a stillborn, with birth weight greater than or equal to 500 grams and/or gestational age greater than or equal to 22 weeks of gestation. Women with planned home birth were excluded. All women were followed by a multidisciplinary team led by an obstetrician since the antenatal period. During the visits, clinical and non-clinical aspects of childbirth care and perinatal education and promotion of vaginal birth as a positive experience were broached, respecting the woman’s autonomy. An obstetrician was present in all births (including low risk) and prioritized the active phase for childbirth admission. When a midwife was part of the team, there were alternate antenatal visits by her and the obstetrician, and she did the first evaluation of the birth process at the woman’s home, the obstetrician coming to the birth from dilation at 6cm on, or before if there were complications or the woman asked for analgesia. In labour, they had continuous support, the presence of a companion and/or a doula of their choice; completion of delivery registered in their medical record; use of non-pharmacological methods for pain relief; freedom of movement during labour; free food ingestion; freedom of choice of position for delivery and no use of a peripheral venous catheter, oxytocin or routine amniotomy. The study received ethical approval from the Research Ethics Committee of the Faculdade de Saúde Pública da Universidade de São Paulo through national Plataforma Brasil under the Certificate of Presentation of Ethical Appreciation (CAAE) number 50733621.8.0000.5421 on September 16, 2021, based on the Helsinki declaration. The ethical committee has approved that the individual informed consent was not considered due to the confidential handling of the data presented without identifying the individuals.
DOI: 10.5281/zenodo.6958543
title: Disturbances in vegetation detected with BFAST in the Purapel fluvial catchment

description: This dataset contains the results (69 TIFF files) of seasonal disturbances detected in vegetation in the Purapel catchment (southern Chile) for the period from 2002 to 2019. These disturbances were obtained by applying the Breaks for Additive Season and Trend (BFAST, Verbesselt et al., 2010) algorithm to 745 Landsat 5, 7 and 8 imagery. We used Collection 2 Level 2 surface reflectance products and applied the CFMask algorithm (Foga et al., 2017) for cloud masking before utilizing the BFAST algorithm. The BFAST algorithm detects changes in the NDVI time series of each pixel. To determine which event was considered a disturbance, we used the same intensity thresholds as in Cabezas and Fassnacht (2018). We then filtered the results to keep just the disturbances with areas greater than 1 hectare, eliminating noisy data. Except for 2 big wildfires (2015 and 2017) it was assumed that all of the disturbances were clear cuts, since forestry is the main productive activity in the region. This was confirmed by validating the data with 35 manually drawn polygons that were randomly distributed across the catchment. Then, we performed an accuracy assessment, obtaining a confusion matrix with a balanced accuracy of 0,86 and a F1 score of 0,69. Each TIFF file is a binary grid with “zeros” representing no disturbance and “ones” representing a disturbance in the season that the name of the file indicates. A GIF file is also included, which contains the time series of the disturbances for easier graphical purposes. References J. Cabezas and F. E. Fassnacht. Reconstructing the Vegetation Disturbance History of a Biodiversity Hotspot in Central Chile Using Landsat, Bfast and Landtrendr. In IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium, pages 7636–7639. IEEE, 7 2018. ISBN 978-1-5386-7150-4. doi: 10.1109/IGARSS.2018.8518863. S. Foga, P. L. Scaramuzza, S. Guo, Z. Zhu, R. D. Dilley, T. Beckmann, G. L. Schmidt, J. L. Dwyer, M. Joseph Hughes, and B. Laue. Cloud detection algorithm comparison and validation for operational Landsat data products. Remote Sensing of Environment, 194:379–390, 6 2017. ISSN 00344257. doi: 10.1016/j.rse.2017.03.026. J. Verbesselt, R. Hyndman, G. Newnham, and D. Culvenor. Detecting trend and seasonal changes in satellite image time series. Remote Sensing of Environment, 114(1):106–115, 1 2010. ISSN 00344257. doi: 10.1016/ j.rse.2009.08.014. URL http://linkinghub.elsevier.com/retrieve/pii/S003442570900265X.
description: Dataset funded by ANID (FONDECYT project 11190864, FONDAP project 15110009) and the UFRO Postdoc grant VRIP20P001
DOI: 10.17632/3db8cxj47f.1
title: CV tracking data

description: This csv file contains the tracking data of the cyclonic vortex (CV) featured in "Multiple convective storms within a single cyclone on Saturn" by Gunnarson, et al., submitted to Icarus.  These data were used to make Fig. 2a and 2b.  The columns (indicated in the header) are Image ID, Time (UTC), Planetocentric Latitude, and Eastern Longitude.
DOI: 10.17632/hnh7fcm398.1
title: Circular Economy in Mexican Agribusiness

description: The questionnaire supported hypotheses based on the Stakeholder Theory. It was proposed that the stakeholder pressures have an effect in the performance of the Mexican Agribusiness. The object of the study was the employees of Agribusiness in the northwest of Mexico. The data included sociodemographic variables and five constructs. The sociodemographic variables recollected in the instrument are gender (GEN), and years of experience (EXP). The scale of gender was 1 for female and 2 for male. The variable years of experience was a ratio variable on years. The constructs were stakeholder pressure (DSI16-DSI20), circular economy principles (PRAC31-PRAC40), economic performance (REF1 to REF10), environmental performance (PADI21-PADI30), and intellectual/social performance (DSI11-DSI15). These constructs were measured with a 5-point Likert scales (1-not at all to 5- significant).
DOI: 10.17632/656tpbwdzt.2
title: Faecal prevalence, distribution, and risk factors associated with canine soil-transmitted helminths contaminating urban parks across Australia

description: Faecal prevalence, distribution, and risk factors associated with canine soil-transmitted helminths contaminating urban parks across Australia
DOI: 10.17632/bypgm544zd.1
title: Ptms unlocks chromatin, Fig 7

description: Brain glial progenitor cells in culture spontaneously transform into neoplastic cells with tumorigenic potential. Transcript analysis identified a histone binding protein up regulated during this process. An examination of its function when introduced into normal cells revealed a dramatic affects on chromatin, with decreased DNA methylation and induction of glioma identity genes. 
 
These files contain individual fasta genomic sequences of rat brain glial cells (PC, files djt69), and human embryo kidney (HEK, files djt70, djt86) transfected with a plasmid expression vectors then treated with Ct conversion reagent (Zymo Research, Cat #D5001-1) to distinguish methylated and non-methyl CpG sites.

69-1  OPC x eGFP
69-2  OPC x Ptms
69-3  OPC x H1a
69-4  OPC x H1a,Ptms 
70-2  HEK x Ptms
70-3  HEK x H1a 
70-4  HEK x H1a Ptms 
86-1  HEK x eGFP 
86-2  HEK x Ptms 
86-3  HEK x H1a 
86-4  HEK x H1a, Ptms
DOI: 10.17632/v2smy6zb79.1
title: PhD Related Data: THE ENHANCEMENT OF MECHANICAL DAMPING AND STIFFNESS TRADE-OFF USING UNIDIRECTIONAL CARBON FIBER REINFORCED POLYMER COMPOSITE INTERLEAVED WITH RECYCLED CARBON FIBER AND SHORT VIRGIN ARAMID FIBER NON-WOVEN MATS by Cephas Yaw Attahu

description: This research investigated incorporating recycled carbon fibers (rCFs) into carbon fiber reinforced polymer composites (CFRPs) for structural applications. The impacts of titanate coupling agent-L12 on the mats; the interleaved rCFs mat's numbers; their locations (the interleaved rCFs mat); the influence of the rCFs' lengths and their combinations (combining different rCF lengths); types (different rCF types); and their (rCFs) micro-hybridization with short virgin aramid fibers (vAFs) were all explored as part of the investigations. This project addressed and closed a significant gap in using rCFs for structural applications. The methodology used (the interleaving of UD fiber/epoxy prepreg with rCF non-woven mats) is the first of its kind. Furthermore, the final product (the best configuration, Laminate T) was very competitive: it was pegged against another novel composite material from an excellent source, and the results were very encouraging. Hosted here is the project's related raw dataset.
DOI: 10.6084/m9.figshare.20443149
title: Frontiers supplemental materials-Carbonsource utilization_bambara groundnut.docx

description: Carbon source utilization pattern of Bambara groundnut rhizobacteria at different growth stages using BiologTM
DOI: 10.6084/m9.figshare.20443149.v1
title: Frontiers supplemental materials-Carbonsource utilization_bambara groundnut.docx

description: Carbon source utilization pattern of Bambara groundnut rhizobacteria at different growth stages using BiologTM
DOI: 10.6084/m9.figshare.20443182.v1
title: The Pandemic Experience (DATE RANGE)

description: Description of new study files here
DOI: 10.5281/zenodo.6968470
title: PSnpBind: A database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow

description: A key concept in drug design is how natural variants, especially the ones occurring in the binding site of drug targets, affect the inter-individual drug response and efficacy by altering binding affinity. These effects have been studied on very limited and small datasets while, ideally, a large dataset of binding affinity changes due to binding site single-nucleotide polymorphisms (SNPs) is needed for evaluation. However, to the best of our knowledge, such a dataset does not exist. Thus, a reference dataset of ligands binding affinities to proteins with all their reported binding sites’ variants was constructed using a molecular docking approach. Having a large database of protein-ligand complexes covering a wide range of binding pocket mutations and a large small molecules’ landscape is of great importance for several types of studies. For example, developing machine learning algorithms to predict protein-ligand affinity or a SNP effect on it requires an extensive amount of data. In this work, we present PSnpBind: A large database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow. It provides a web interface to explore and visualize the protein-ligand complexes and a REST API to programmatically access the different aspects of the database contents. PSnpBind is freely available at https://psnpbind.org.<strong> </strong>The source code of the tools used in constructing PSnpBind is available on GitHub.
DOI: 10.5281/zenodo.5112333
title: PSnpBind: A database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow

description: A key concept in drug design is how natural variants, especially the ones occurring in the binding site of drug targets, affect the inter-individual drug response and efficacy by altering binding affinity. These effects have been studied on very limited and small datasets while, ideally, a large dataset of binding affinity changes due to binding site single-nucleotide polymorphisms (SNPs) is needed for evaluation. However, to the best of our knowledge, such a dataset does not exist. Thus, a reference dataset of ligands binding affinities to proteins with all their reported binding sites’ variants was constructed using a molecular docking approach. Having a large database of protein-ligand complexes covering a wide range of binding pocket mutations and a large small molecules’ landscape is of great importance for several types of studies. For example, developing machine learning algorithms to predict protein-ligand affinity or a SNP effect on it requires an extensive amount of data. In this work, we present PSnpBind: A large database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow. It provides a web interface to explore and visualize the protein-ligand complexes and a REST API to programmatically access the different aspects of the database contents. PSnpBind is freely available at https://psnpbind.org.<strong> </strong>The source code of the tools used in constructing PSnpBind is available on GitHub.
DOI: 10.5281/zenodo.6968578
title: Data_S1_Frawley_2022

description: Supplemental Data from Frawley et al. 2022 containing the final annual assignments of clustered pelagic longline fishing vessels across combined convention bounds of the IATTC and WCPFC in the Pacific Ocean for 2017, 2018, & 2019.
DOI: 10.5281/zenodo.6968577
title: Data_S1_Frawley_2022

description: Supplemental Data from Frawley et al. 2022 containing the final annual assignments of clustered pelagic longline fishing vessels across combined convention bounds of the IATTC and WCPFC in the Pacific Ocean for 2017, 2018, & 2019.
DOI: 10.34740/kaggle/dsv/4034293
title: Tales from the Pizza Guy
DOI: 10.5281/zenodo.6968448
title: Datasets for "Learning Anisotropic Interaction Rules from Individual Trajectories in a Heterogeneous Cellular Population"

description: Datasets used as examples in "<strong>Learning Anisotropic Interaction Rules from Individual Trajectories in a Heterogeneous Cellular Population</strong>", DA Messenger, GE Wheeler, X Liu DM Bortz, arXiv:2204.14141, 2022. Code: https://github.com/MathBioCU/WSINDy_CellCluster Download code and run <strong>visualize_trajectories.m , </strong>changing file in line 5 accordingly.
description: Updated previous error in 111.zip