cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11452062
title: PhenoRoots: an inexpensive non-invasive phenotyping system to assess the variability of the root system architecture

description: ABSTRACT: The root system architecture (RSA) of plants and its functioning play a fundamental role in a number of plant growth mechanisms including water and nutrient uptake. Optimization of the RSA is important for stable and increased plant productivity under adverse conditions. Despite its great importance, studying the RSA is notoriously laborious because of the difficulty of accessing the rooting system of plants. We developed a root phenotyping platform, PhenoRoots, which allows for the non-invasive study of plant RSA. The system was built using inexpensive material and was designed to provide medium throughput. Substrate or soil-filled rhizotrons are used to grow plantlets, whose roots are directly visible through a glass plate. An experiment conducted on a panel of twenty Upland cotton (Gossypium hirsutum L.) varieties demonstrated the usefulness of the platform in assessing RSA traits. A number of traits, destructive and non-destructive, related to the RSA were measured and statistically analyzed. The non-destructive traits based on image analysis of roots were more accurate and showed high correlation with the time-consuming destructive measurements. The platform allowed for capturing the phenotypic and genetic variability found in the panel of cotton varieties, and to define three contrasting RSA patterns. PhenoRoots provides an inexpensive alternative to the medium throughput analysis of RSA traits in plants.
DOI: 10.6084/m9.figshare.11452053
title: Performance evaluation of an indirect immunofluorescence kit for the serological diagnosis of dengue

description: ABSTRACT Objective: To evaluate the performance of indirect immunofluorescence for serological diagnosis of dengue virus in a population with high prevalence of arboviruses. Methods: Two-hundred serum samples from patients with clinical suspicion of dengue fever were tested by immunoenzymatic and indirect immunofluorescence assay BIOCHIP® mosaic. Specificity, sensitivity and Kappa coefficient were calculated. Discordant samples were tested by polymerase chain reaction for confirmation. Results: Of the 200 samples, 20% were positive and 80% negative for anti-dengue virus IgM antibodies in the immunoenzymatic test. Of the 40 positives, 25% were negative in indirect immunofluorescence. Of these ten discordant results, only 20% were also negative in the polymerase chain reaction (PCR). Of the 160 negatives in the immunoenzymatic test, 5% were positive in indirect immunofluorescence. Of these nine discordant results, 33% were positive in the PCR. The Kappa coefficient was 0.7 (0.572-0.829). Sensitivity and specificity of indirect immunofluorescence were respectively 75% and 94%. For anti-dengue virus IgG antibodies, of the 200 samples, 15.5% were positive and 84.5% were negative in the immunoenzymatic test. Of the 31 positives, 12.9% were negative in indirect immunofluorescence. Of these four discordant results, 25% were negative in the PCR. Of the 169 negatives, 8% were positive in indirect immunofluorescence. Of these 14 discordant results, 64% were also positive in the PCR. The Kappa coefficient was 0.695 (0.563-0.83). Sensitivity and specificity of indirect immunofluorescence were 87.1% and 91.7%, respectively. Conclusion: For diagnosis of acute infection, the immunoenzymatic test is enough, and the use of additional methods is not warranted. Replacing the immunoenzymatic test by indirect immunofluorescence would compromise the sensitivity for IgM. However, indirect immunofluorescence can distinguish three arboviruses simultaneously, an advantage during concomitant epidemics.
DOI: 10.6084/m9.figshare.11452053.v1
title: Performance evaluation of an indirect immunofluorescence kit for the serological diagnosis of dengue

description: ABSTRACT Objective: To evaluate the performance of indirect immunofluorescence for serological diagnosis of dengue virus in a population with high prevalence of arboviruses. Methods: Two-hundred serum samples from patients with clinical suspicion of dengue fever were tested by immunoenzymatic and indirect immunofluorescence assay BIOCHIP® mosaic. Specificity, sensitivity and Kappa coefficient were calculated. Discordant samples were tested by polymerase chain reaction for confirmation. Results: Of the 200 samples, 20% were positive and 80% negative for anti-dengue virus IgM antibodies in the immunoenzymatic test. Of the 40 positives, 25% were negative in indirect immunofluorescence. Of these ten discordant results, only 20% were also negative in the polymerase chain reaction (PCR). Of the 160 negatives in the immunoenzymatic test, 5% were positive in indirect immunofluorescence. Of these nine discordant results, 33% were positive in the PCR. The Kappa coefficient was 0.7 (0.572-0.829). Sensitivity and specificity of indirect immunofluorescence were respectively 75% and 94%. For anti-dengue virus IgG antibodies, of the 200 samples, 15.5% were positive and 84.5% were negative in the immunoenzymatic test. Of the 31 positives, 12.9% were negative in indirect immunofluorescence. Of these four discordant results, 25% were negative in the PCR. Of the 169 negatives, 8% were positive in indirect immunofluorescence. Of these 14 discordant results, 64% were also positive in the PCR. The Kappa coefficient was 0.695 (0.563-0.83). Sensitivity and specificity of indirect immunofluorescence were 87.1% and 91.7%, respectively. Conclusion: For diagnosis of acute infection, the immunoenzymatic test is enough, and the use of additional methods is not warranted. Replacing the immunoenzymatic test by indirect immunofluorescence would compromise the sensitivity for IgM. However, indirect immunofluorescence can distinguish three arboviruses simultaneously, an advantage during concomitant epidemics.
DOI: 10.6084/m9.figshare.11452062.v1
title: PhenoRoots: an inexpensive non-invasive phenotyping system to assess the variability of the root system architecture

description: ABSTRACT: The root system architecture (RSA) of plants and its functioning play a fundamental role in a number of plant growth mechanisms including water and nutrient uptake. Optimization of the RSA is important for stable and increased plant productivity under adverse conditions. Despite its great importance, studying the RSA is notoriously laborious because of the difficulty of accessing the rooting system of plants. We developed a root phenotyping platform, PhenoRoots, which allows for the non-invasive study of plant RSA. The system was built using inexpensive material and was designed to provide medium throughput. Substrate or soil-filled rhizotrons are used to grow plantlets, whose roots are directly visible through a glass plate. An experiment conducted on a panel of twenty Upland cotton (Gossypium hirsutum L.) varieties demonstrated the usefulness of the platform in assessing RSA traits. A number of traits, destructive and non-destructive, related to the RSA were measured and statistically analyzed. The non-destructive traits based on image analysis of roots were more accurate and showed high correlation with the time-consuming destructive measurements. The platform allowed for capturing the phenotypic and genetic variability found in the panel of cotton varieties, and to define three contrasting RSA patterns. PhenoRoots provides an inexpensive alternative to the medium throughput analysis of RSA traits in plants.
DOI: 10.6084/m9.figshare.11452047
title: Ureteropelvic junction obstruction caused by metastatic cholangiocarcinoma

description: ABSTRACT We describe the rare case of a 61-year-old female with right ureteropelvic junction (UPJ) obstruction caused by metastatic cholangiocarcinoma. Her past medical history was notable for cholangiocarcinoma treated with neoadjuvant chemoradiation and two orthotopic liver transplants six years earlier. Urology was consulted when she presented with flank pain and urinary tract infection. Diagnostic workup demonstrated right UPJ obstruction. She was managed acutely with percutaneous nephrostomy. She subsequently underwent robotic pyeloplasty and intrinsic obstruction of the UPJ was discovered. Histological examination revealed adenocarcinoma, consistent with systemic recurrence of the patient's known cholangiocarcinoma.
DOI: 10.6084/m9.figshare.11452050
title: Association between eating disorders, suicide and depressive symptoms in undergraduate students of health-related courses

description: ABSTRACT Objective: To identify symptoms of eating disorders and potential associations with risk of suicide and depressive symptoms in undergraduate students of health-related courses. Methods: A cross-sectional study involving 271 students. The following instruments were used to identify symptoms of eating disorders: Eating Attitudes Test-26 and Bulimic Investigatory Test of Edinburgh. The Hamilton Depression Rating Scale and the Mini International Neuropsychiatric Interview were used to screen for depressive symptoms and risk of suicide, respectively. Participants answered a questionnaire aimed to collect biodemographic data for economic classification of the sample. Results: Symptoms of eating disorders and bulimia nervosa were detected in 7.4% and 29.1% of students, respectively. Approximately 17.3% of students had symptoms of major depression, and 13.6% were at risk of suicide to some extent; risk of suicide was thought to be low in 7.4%, moderate in 0.7% and high in 5.5% of students in this subset. The risk of eating disorder development was correlated with the risk of suicide (p&lt;0.001). Conclusion: Undergraduate students at risk of developing eating disorders, or with symptoms suggestive of depression, are more prone to commit suicide.
DOI: 10.6084/m9.figshare.11452047.v1
title: Ureteropelvic junction obstruction caused by metastatic cholangiocarcinoma

description: ABSTRACT We describe the rare case of a 61-year-old female with right ureteropelvic junction (UPJ) obstruction caused by metastatic cholangiocarcinoma. Her past medical history was notable for cholangiocarcinoma treated with neoadjuvant chemoradiation and two orthotopic liver transplants six years earlier. Urology was consulted when she presented with flank pain and urinary tract infection. Diagnostic workup demonstrated right UPJ obstruction. She was managed acutely with percutaneous nephrostomy. She subsequently underwent robotic pyeloplasty and intrinsic obstruction of the UPJ was discovered. Histological examination revealed adenocarcinoma, consistent with systemic recurrence of the patient's known cholangiocarcinoma.
DOI: 10.6084/m9.figshare.11452050.v1
title: Association between eating disorders, suicide and depressive symptoms in undergraduate students of health-related courses

description: ABSTRACT Objective: To identify symptoms of eating disorders and potential associations with risk of suicide and depressive symptoms in undergraduate students of health-related courses. Methods: A cross-sectional study involving 271 students. The following instruments were used to identify symptoms of eating disorders: Eating Attitudes Test-26 and Bulimic Investigatory Test of Edinburgh. The Hamilton Depression Rating Scale and the Mini International Neuropsychiatric Interview were used to screen for depressive symptoms and risk of suicide, respectively. Participants answered a questionnaire aimed to collect biodemographic data for economic classification of the sample. Results: Symptoms of eating disorders and bulimia nervosa were detected in 7.4% and 29.1% of students, respectively. Approximately 17.3% of students had symptoms of major depression, and 13.6% were at risk of suicide to some extent; risk of suicide was thought to be low in 7.4%, moderate in 0.7% and high in 5.5% of students in this subset. The risk of eating disorder development was correlated with the risk of suicide (p&lt;0.001). Conclusion: Undergraduate students at risk of developing eating disorders, or with symptoms suggestive of depression, are more prone to commit suicide.
DOI: 10.6084/m9.figshare.11452041
title: Dual crop coefficient for the early-cycle soybean cultivar SoyTech 815 RR

description: ABSTRACT The objective of this study was to determine the dual crop coefficient of an early-cycle soybean cultivar for the city of Tangará da Serra, MT, Brazil, using high-precision lysimeters. The method used was the dual crop coefficient (dual Kc) of FAO Bulletin 56, constitued by soil evaporation coefficient (Ke), determined by microlysimeters, and by basal crop coefficient (Kcb), determined by weighing lysimeters. Reference evapotranspiration (ETo) was calculated using the Penman-Monteith equation. Soybean sowing and harvesting were performed in the 2015/16 season with spacing of 0.45 m between rows. The reference evapotranspiration (ETo) estimated for the cultivation period was 267.06 mm; the crop evapotranspiration was 323.61 mm throughout its cycle. The Kcb values determined by lysimeters for soybean cultivation were 0.47, 1.15 and 0.89 for the initial, intermediate and final stages, respectively; Ke values at the initial, intermediate and final stages were 0.94, 0.14 and 0.44, respectively.
DOI: 10.6084/m9.figshare.11452044
title: Malignant leydig cell tumor in a 91-year-old man: Case report

description: ABSTRACT Testicle tumors are a rare entity among men population, accounting for only 1-1.5% of all cancers among men. The stromal tumors of the sexual cord correspond just 4% of all testicular cancers. Only 10% of them are malignant. The major representative of the sex cord-stromal tumors is the Leydig cell tumor, corresponding to 75 to 80% of the total. It has bimodal age incidence, involving children and adults between 30 and 60 years. We report the caso of a 91-year-old man with malignant Leydig cell tumor, presenting increase of the volume of scrotum, local pain and hyperemia. The are few cases in the literature, only 1 with pacient above 85 years old.
DOI: 10.6084/m9.figshare.11452044.v1
title: Malignant leydig cell tumor in a 91-year-old man: Case report

description: ABSTRACT Testicle tumors are a rare entity among men population, accounting for only 1-1.5% of all cancers among men. The stromal tumors of the sexual cord correspond just 4% of all testicular cancers. Only 10% of them are malignant. The major representative of the sex cord-stromal tumors is the Leydig cell tumor, corresponding to 75 to 80% of the total. It has bimodal age incidence, involving children and adults between 30 and 60 years. We report the caso of a 91-year-old man with malignant Leydig cell tumor, presenting increase of the volume of scrotum, local pain and hyperemia. The are few cases in the literature, only 1 with pacient above 85 years old.
DOI: 10.6084/m9.figshare.11452041.v1
title: Dual crop coefficient for the early-cycle soybean cultivar SoyTech 815 RR

description: ABSTRACT The objective of this study was to determine the dual crop coefficient of an early-cycle soybean cultivar for the city of Tangará da Serra, MT, Brazil, using high-precision lysimeters. The method used was the dual crop coefficient (dual Kc) of FAO Bulletin 56, constitued by soil evaporation coefficient (Ke), determined by microlysimeters, and by basal crop coefficient (Kcb), determined by weighing lysimeters. Reference evapotranspiration (ETo) was calculated using the Penman-Monteith equation. Soybean sowing and harvesting were performed in the 2015/16 season with spacing of 0.45 m between rows. The reference evapotranspiration (ETo) estimated for the cultivation period was 267.06 mm; the crop evapotranspiration was 323.61 mm throughout its cycle. The Kcb values determined by lysimeters for soybean cultivation were 0.47, 1.15 and 0.89 for the initial, intermediate and final stages, respectively; Ke values at the initial, intermediate and final stages were 0.94, 0.14 and 0.44, respectively.
DOI: 10.6084/m9.figshare.11452038
title: ENDOPHYTIC FUNGI COMMUNITY IN Eremanthus erythropappus TREE FROM ANTHROPOGENIC AND NATURAL AREAS OF MINAS GERAIS

description: ABSTRACT It is know that many plants live in symbiosis with microorganisms that can be found on their interior, the endophytes. Environment and tissue type are modulating factors of this community, in which most of these microorganisms produce important antimicrobial molecules and they may be powerful biocontrol agents in agriculture. Thus, the aim of this study was to evaluate the community of Endophytic fungi from Eremanthus erythropappus in anthropogenic and natural areas (with human interaction, natural habitat and planned planting) of Minas Gerais State, Brazil, through cultivation-based approach and verify their antimicrobial activity against phytopathogenic fungal and pathogenic bacteria. The endophytic fungi isolated were identified by sequencing of the ITS region and subjected an in vitro antagonism test. The antagonisms that show antibiosis were submitted to tests on split plates to verify the volatile compound production. In the pairing testes, the endophytic fungi of the genera Cryptosporiopsis, Diaporthe, Xylaria, Paraconiothyrium and Camarosporium presented antibiosis against phytopathogenic fungi by releasing compounds in the medium. To our knowledge, this paper is the first report on the isolation of twelve genera fungi in E. erythropappus besides verifying their antagonist capacity, which opens the way for discovery of bioactive substances produced by endophytic fungi that inhibit pathogens.
DOI: 10.6084/m9.figshare.11452038.v1
title: ENDOPHYTIC FUNGI COMMUNITY IN Eremanthus erythropappus TREE FROM ANTHROPOGENIC AND NATURAL AREAS OF MINAS GERAIS

description: ABSTRACT It is know that many plants live in symbiosis with microorganisms that can be found on their interior, the endophytes. Environment and tissue type are modulating factors of this community, in which most of these microorganisms produce important antimicrobial molecules and they may be powerful biocontrol agents in agriculture. Thus, the aim of this study was to evaluate the community of Endophytic fungi from Eremanthus erythropappus in anthropogenic and natural areas (with human interaction, natural habitat and planned planting) of Minas Gerais State, Brazil, through cultivation-based approach and verify their antimicrobial activity against phytopathogenic fungal and pathogenic bacteria. The endophytic fungi isolated were identified by sequencing of the ITS region and subjected an in vitro antagonism test. The antagonisms that show antibiosis were submitted to tests on split plates to verify the volatile compound production. In the pairing testes, the endophytic fungi of the genera Cryptosporiopsis, Diaporthe, Xylaria, Paraconiothyrium and Camarosporium presented antibiosis against phytopathogenic fungi by releasing compounds in the medium. To our knowledge, this paper is the first report on the isolation of twelve genera fungi in E. erythropappus besides verifying their antagonist capacity, which opens the way for discovery of bioactive substances produced by endophytic fungi that inhibit pathogens.
DOI: 10.6084/m9.figshare.11452032
title: Role of the three-dimensional printing technology in complex laparoscopic renal surgery: a renal tumor in a horseshoe kidney

description: ABSTRACT Purpose: To report our initial experience using a patient-specific 3D-printed renal tumor model for the surgical planning of a complex heminephrectomy in a horseshoe kidney. Materials and Methods: We selected a clinical case for a complex laparoscopic surgery consisting in a 53 year-old male presenting a local recurrence of a renal tumor in a horseshoe kidney with aberrant vascularisation previously treated with a laparoscopic partial nephrectomy. He is now proposed for a laparoscopic left heminephrectomy. Along with conventional imaging, a real-size 3D-printed renal model was used to plan de surgical approach. The perioperative experience of the surgical team was recorded. Results: The surgical team found the patient-specific 3D printed model useful for a better understanding of the anatomy and an easier surgical planning. Conclusion: The use of patient-specific 3D-printed renal models seem to be helpful for the surgical planning in complex renal tumors.
DOI: 10.6084/m9.figshare.11452029
title: Serving as a bedside surgeon before performing robotic radical prostatectomy improves surgical outcomes

description: ABSTRACT Introduction: To evaluate the influence of previous experience as bedside assistants on patient selection, perioperative and pathological results in robot assisted laparoscopic radical prostatectomy. Materials and Methods: The first 50 cases of two robotic surgeons were reviewed retrospectively. Group 1 consisted of the first 50 cases of the surgeon with previous experience as a robotic bedside assistant between September 2016-July 2018, while Group 2 included the first 50 cases of the surgeon with no bedside assistant experience between February 2009-December 2009. Groups were examined in terms of demographics, prostate volume, presence of median lobe, prostate specific antigen (PSA), preoperative Gleason score, positive core number, clinical stage, console surgery time, estimated blood loss, postoperative Gleason score, pathological stage, positive surgical margin rate, postoperative complications, length of hospital stay and biochemical recurrence rate. Results: Previous abdominal surgery and the presence of median lobe hypertrophy rates were higher in Group 1 than in Group 2 (20% vs. 4%, p=0.014; 24% vs. 6%, p=0.012; respectively). In addition, patients in Group 1 were in a higher clinical stage than those in Group 2 (cT2: 70% vs. 28%, p=0.001). Median console surgery time and median length of hospital stay was significantly shorter in Group 1 than in Group 2 (170 min vs. 240 min, p=0.001; 3 vs. 4, p=0.022; respectively). Clavien grade 3 complication rate was higher in Group 2 but was statistically insignificant. Conclusion: Our findings might reflect that previous bedside assistant experience led to an increase in self-confidence and the ability to manage troubleshooting and made it more likely for surgeons to start with more difficult cases with more challenging patients. It is recommended that novice surgeons serve as bedside assistants before moving on to consoles.
DOI: 10.6084/m9.figshare.11452032.v1
title: Role of the three-dimensional printing technology in complex laparoscopic renal surgery: a renal tumor in a horseshoe kidney

description: ABSTRACT Purpose: To report our initial experience using a patient-specific 3D-printed renal tumor model for the surgical planning of a complex heminephrectomy in a horseshoe kidney. Materials and Methods: We selected a clinical case for a complex laparoscopic surgery consisting in a 53 year-old male presenting a local recurrence of a renal tumor in a horseshoe kidney with aberrant vascularisation previously treated with a laparoscopic partial nephrectomy. He is now proposed for a laparoscopic left heminephrectomy. Along with conventional imaging, a real-size 3D-printed renal model was used to plan de surgical approach. The perioperative experience of the surgical team was recorded. Results: The surgical team found the patient-specific 3D printed model useful for a better understanding of the anatomy and an easier surgical planning. Conclusion: The use of patient-specific 3D-printed renal models seem to be helpful for the surgical planning in complex renal tumors.