cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17140585.v1
title: Additional file 2 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 2. List of differentially expressed genes with p-value&lt;0.05, absolute log2 fold change&gt;0.5 and mean of read counts&gt;50 reads.
DOI: 10.6084/m9.figshare.17140591
title: Additional file 3 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 3. List of significant Ingenuity Canonical Pathways
DOI: 10.6084/m9.figshare.17140591.v1
title: Additional file 3 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 3. List of significant Ingenuity Canonical Pathways
DOI: 10.6084/m9.figshare.17140597
title: Additional file 4 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 4. Gene Ontology (GO) terms and associated genes, obtained from the Over Representation Analysis (ORA) with adjusted p value &lt; 0.1
DOI: 10.6084/m9.figshare.17140600
title: Additional file 5 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 5. List of abundant microRNAs, significantly regulated in the BPS patients compared to controls
DOI: 10.6084/m9.figshare.17140597.v1
title: Additional file 4 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 4. Gene Ontology (GO) terms and associated genes, obtained from the Over Representation Analysis (ORA) with adjusted p value &lt; 0.1
DOI: 10.6084/m9.figshare.17140600.v1
title: Additional file 5 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 5. List of abundant microRNAs, significantly regulated in the BPS patients compared to controls
DOI: 10.6084/m9.figshare.17140603
title: Additional file 6 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 6. List of the mRNA targets of 62 miRNAs, abundant and regulated in BPS
DOI: 10.6084/m9.figshare.17140603.v1
title: Additional file 6 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 6. List of the mRNA targets of 62 miRNAs, abundant and regulated in BPS
DOI: 10.6084/m9.figshare.17140609
title: Additional file 7 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 7. All data on miRNAs, detected in the profiling using NanoString nCounter Human miRNA Expression Assay kit
DOI: 10.6084/m9.figshare.17140609.v1
title: Additional file 7 of Integrated mRNA-miRNA transcriptome analysis of bladder biopsies from patients with bladder pain syndrome identifies signaling alterations contributing to the disease pathogenesis

description: Additional file 7. All data on miRNAs, detected in the profiling using NanoString nCounter Human miRNA Expression Assay kit
DOI: 10.6084/m9.figshare.17140741
title: Additional file 1 of Deep learning computer-aided detection system for pneumonia in febrile neutropenia patients: a diagnostic cohort study

description: Additional file 1. Supplementary information. Development and function of the computer-aided detection sytem. Figure S1. Example input and output of the computer-aided detection system. Table S1. Performance of the computer-aided detection system at different thresholds. Table S2. Performances of the computer-aided detection system and radiologists in the reader test.
DOI: 10.6084/m9.figshare.17140741.v1
title: Additional file 1 of Deep learning computer-aided detection system for pneumonia in febrile neutropenia patients: a diagnostic cohort study

description: Additional file 1. Supplementary information. Development and function of the computer-aided detection sytem. Figure S1. Example input and output of the computer-aided detection system. Table S1. Performance of the computer-aided detection system at different thresholds. Table S2. Performances of the computer-aided detection system and radiologists in the reader test.
DOI: 10.6084/m9.figshare.17140750
title: Additional file 1 of Quantitative analysis of macroscopic solute transport in the murine brain

description: Additional file 1: 3D animations of concentration data and representative simulation.
DOI: 10.6084/m9.figshare.17140750.v1
title: Additional file 1 of Quantitative analysis of macroscopic solute transport in the murine brain

description: Additional file 1: 3D animations of concentration data and representative simulation.
DOI: 10.6084/m9.figshare.17140777
title: Additional file 1 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 1. DEGs between EPI cells far from the interaction center and EPI cells from the interaction center.
DOI: 10.6084/m9.figshare.17140777.v1
title: Additional file 1 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 1. DEGs between EPI cells far from the interaction center and EPI cells from the interaction center.
DOI: 10.6084/m9.figshare.17140786
title: Additional file 2 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 2. Subtype1-Marker ligand-receptor pairs.
DOI: 10.6084/m9.figshare.17140786.v1
title: Additional file 2 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 2. Subtype1-Marker ligand-receptor pairs.
DOI: 10.6084/m9.figshare.17140792
title: Additional file 3 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 3. Univariate Cox analysis prognosis-associated LR pairs.
DOI: 10.6084/m9.figshare.17140792.v1
title: Additional file 3 of Delineation of colorectal cancer ligand-receptor interactions and their roles in the tumor microenvironment and prognosis

description: Additional file 3. Univariate Cox analysis prognosis-associated LR pairs.
DOI: 10.6084/m9.figshare.17140846
title: Additional file 1 of SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications

description: Additional file 1: User manuals. Instructions about the installation, function list and programming for the proposed scripting system SpinSPJ.
DOI: 10.6084/m9.figshare.17140846.v1
title: Additional file 1 of SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications

description: Additional file 1: User manuals. Instructions about the installation, function list and programming for the proposed scripting system SpinSPJ.
DOI: 10.6084/m9.figshare.17140852
title: Additional file 2 of SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications

description: Additional file 2: Script examples. Example script files of SpinSPJ, including automation, searching shimming, baseline correction, PCA, NUS, etc.
DOI: 10.6084/m9.figshare.17140852.v1
title: Additional file 2 of SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications

description: Additional file 2: Script examples. Example script files of SpinSPJ, including automation, searching shimming, baseline correction, PCA, NUS, etc.
DOI: 10.6084/m9.figshare.17140891.v1
title: Additional file 2 of Degradation of skeletal mass in locally advanced oesophageal cancer between initial diagnosis and recurrence

description: Additional file 2: eFigure 2. a) Disease-free survival in the two skeletal muscle index groups at relapse. b) Overall survival in the two skeletal muscle index groups at relapse.
DOI: 10.6084/m9.figshare.17140891
title: Additional file 2 of Degradation of skeletal mass in locally advanced oesophageal cancer between initial diagnosis and recurrence

description: Additional file 2: eFigure 2. a) Disease-free survival in the two skeletal muscle index groups at relapse. b) Overall survival in the two skeletal muscle index groups at relapse.
DOI: 10.5281/zenodo.5765900
title: Binned NMR data of growth medium of ten microbial strains

description: Microbes were grown in defined growth medium for 4 hours, then medium was collected. 1D 1H NMR spectra were recorded on an 850 MHz Bruker spectrometer and spectra were binned in the R package mrbin, version 1.6.1. From each spectrum, a spectrum of pure medium was subtracted.
DOI: 10.5281/zenodo.5765899
title: Binned NMR data of growth medium of ten microbial strains

description: Microbes were grown in defined growth medium for 4 hours, then medium was collected. 1D 1H NMR spectra were recorded on an 850 MHz Bruker spectrometer and spectra were binned in the R package mrbin, version 1.6.1. From each spectrum, a spectrum of pure medium was subtracted.
DOI: 10.6084/m9.figshare.17140960
title: Additional file 2 of Identification of QTL Combinations that Cause Spikelet Sterility in Rice Derived from Interspecific Crosses

description: Additional file 2. Table S2. List of KASP and DNA markers used in this study. Table S5. Primer sequences for qSS12 used in this study. Table S6. Primer sequences for qSS8 used in this study. Table S7. The putative ORFs in the two target regions of SS12 and SS8 based on the annotation data on Os-Nipponbare-Reference-IRGSP-1.0.
DOI: 10.6084/m9.figshare.17140960.v1
title: Additional file 2 of Identification of QTL Combinations that Cause Spikelet Sterility in Rice Derived from Interspecific Crosses

description: Additional file 2. Table S2. List of KASP and DNA markers used in this study. Table S5. Primer sequences for qSS12 used in this study. Table S6. Primer sequences for qSS8 used in this study. Table S7. The putative ORFs in the two target regions of SS12 and SS8 based on the annotation data on Os-Nipponbare-Reference-IRGSP-1.0.
DOI: 10.6084/m9.figshare.17140996
title: Additional file 2 of Oleaginous yeasts- substrate preference and lipid productivity: a view on the performance of microbial lipid producers

description: Additional file 2: Table S1. Specific sugar consumption in complex media. Table S2. The fatty acid profile of each strain in different media. Table S3 Measurement of dry cell weights for each experiment throughout the cultivation. Table S4 Lipid contents determined on a dry weight basis for each yeast strain. Table S5 The compositional analysis of corn steep liquor powder. Table S6 Overview of lipid contents and lipid concentrations measured in previous studies compared with the current study.
DOI: 10.6084/m9.figshare.17140996.v1
title: Additional file 2 of Oleaginous yeasts- substrate preference and lipid productivity: a view on the performance of microbial lipid producers

description: Additional file 2: Table S1. Specific sugar consumption in complex media. Table S2. The fatty acid profile of each strain in different media. Table S3 Measurement of dry cell weights for each experiment throughout the cultivation. Table S4 Lipid contents determined on a dry weight basis for each yeast strain. Table S5 The compositional analysis of corn steep liquor powder. Table S6 Overview of lipid contents and lipid concentrations measured in previous studies compared with the current study.
DOI: 10.6084/m9.figshare.17141005
title: Additional file 2 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2

description: Additional file 2. Specifications of tree sets (input data, edge contraction parameters, filtering effects) and tree-based phylogenetic networks (reticulation numbers, temporal distance).
DOI: 10.6084/m9.figshare.17141005.v1
title: Additional file 2 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2

description: Additional file 2. Specifications of tree sets (input data, edge contraction parameters, filtering effects) and tree-based phylogenetic networks (reticulation numbers, temporal distance).
DOI: 10.6084/m9.figshare.17141014
title: Additional file 4 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2

description: Additional file 4. Overview of the 11 methods for constructing phylogenetic networks from which the algorithms for our workflow were selected.
DOI: 10.6084/m9.figshare.17141014.v1
title: Additional file 4 of Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2

description: Additional file 4. Overview of the 11 methods for constructing phylogenetic networks from which the algorithms for our workflow were selected.
DOI: 10.6084/m9.figshare.17141125
title: Additional file 1 of Non-academic factors influencing the development of empathy in undergraduate nursing students: a cross-sectional study

description: Additional file 1
DOI: 10.6084/m9.figshare.17141125.v1
title: Additional file 1 of Non-academic factors influencing the development of empathy in undergraduate nursing students: a cross-sectional study

description: Additional file 1
DOI: 10.6084/m9.figshare.17037732
title: Additional file 2 of Establishing a core outcome set for mucopolysaccharidoses (MPS) in children: study protocol for a rapid literature review, candidate outcomes survey, and Delphi surveys

description: Additional file 2. Draft data extraction form
DOI: 10.6084/m9.figshare.17037732.v1
title: Additional file 2 of Establishing a core outcome set for mucopolysaccharidoses (MPS) in children: study protocol for a rapid literature review, candidate outcomes survey, and Delphi surveys

description: Additional file 2. Draft data extraction form
DOI: 10.6084/m9.figshare.17141182
title: Additional file 1 of Development of a radiographic scoring system for new bone formation in gout

description: Additional file 1: Figure S1. PRISMA flow diagram for literature review. Table S1. Frequency of the most commonly used scoring systems that assess any feature of new bone formation (n = 840 papers)a. Data are presented for the most frequently used radiographic scoring systems (&gt; 5 articles). Table S2. Measurements for the first development exercise of individual joint analysis scoring. Table S3. Clinical features of the 20 participants in development exercise. Unless stated, data are presented as mean (SD). Table S4. Clinical features of the 25 participants with full scoring exercise. Unless stated, data are presented as mean (SD). Table S5. Intraclass correlation coefficient (ICC) for the first development exercise. ICC, intraclass correlation coefficient; CI, confidence interval; BLOKS, Boston Leeds Osteoarthritis Knee Score; PARS, Psoriatic Arthritis Ratingen Score. Table S6. Spearman correlation coefficients for baseline visit gout characteristics and new bone formation scores in the full scoring exercise. Table S7. Spearman correlation coefficients for changes in gout outcomes and new bone formation scores in the full scoring exercise over the Year 2 study period. Data are shown as Spearman correlation coefficient (P value).
DOI: 10.6084/m9.figshare.17141182.v1
title: Additional file 1 of Development of a radiographic scoring system for new bone formation in gout

description: Additional file 1: Figure S1. PRISMA flow diagram for literature review. Table S1. Frequency of the most commonly used scoring systems that assess any feature of new bone formation (n = 840 papers)a. Data are presented for the most frequently used radiographic scoring systems (&gt; 5 articles). Table S2. Measurements for the first development exercise of individual joint analysis scoring. Table S3. Clinical features of the 20 participants in development exercise. Unless stated, data are presented as mean (SD). Table S4. Clinical features of the 25 participants with full scoring exercise. Unless stated, data are presented as mean (SD). Table S5. Intraclass correlation coefficient (ICC) for the first development exercise. ICC, intraclass correlation coefficient; CI, confidence interval; BLOKS, Boston Leeds Osteoarthritis Knee Score; PARS, Psoriatic Arthritis Ratingen Score. Table S6. Spearman correlation coefficients for baseline visit gout characteristics and new bone formation scores in the full scoring exercise. Table S7. Spearman correlation coefficients for changes in gout outcomes and new bone formation scores in the full scoring exercise over the Year 2 study period. Data are shown as Spearman correlation coefficient (P value).
DOI: 10.6084/m9.figshare.17141224
title: Additional file 2 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 2: Table S3. A) Viral characterization—Conceptual table.
DOI: 10.6084/m9.figshare.17141224.v1
title: Additional file 2 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 2: Table S3. A) Viral characterization—Conceptual table.
DOI: 10.6084/m9.figshare.17141233
title: Additional file 3 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 3: Table S6. Pathways analysis based on Reactome Pathways Relation.
DOI: 10.6084/m9.figshare.17141233.v1
title: Additional file 3 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 3: Table S6. Pathways analysis based on Reactome Pathways Relation.
DOI: 10.6084/m9.figshare.17141239.v1
title: Additional file 4 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 4: Table S7. Detailed table of evidences.
DOI: 10.6084/m9.figshare.17141239
title: Additional file 4 of Multi-omics approach to COVID-19: a domain-based literature review

description: Additional file 4: Table S7. Detailed table of evidences.
DOI: 10.6084/m9.figshare.17139989.v1
title: Nanoengineered on-demand drug delivery system improves efficacy of pharmacotherapy for epilepsy

description: The dataset was collected during a therapeutic study for epilepsy control at Zhejiang Chinese Medical University and Zhejiang University, and has been processed to produce a manuscript with supplementary information accepted for publication in Science Advances.Long-term pharmacotherapy, serving as the main therapeutic approach for epilepsy prophylaxis, has suffered from limited efficacy and potential side effects, due to blood-brain barrier (BBB) and untimely medication. Here, we reported a nano-engineered drug delivery system for synergistic brain-targeting delivery and on-demand drug release of antiepileptic drugs (AEDs). The physical and chemical properties of the delivery system including nanoparticle size, surface charge, monodispersity, conductivity and others were collected. Cellular study including transwell model for BBB penetration was also conducted. The results demonstrated that the dopamine-pyrrole hybrid system can improve delivery efficiency through a combination of receptor-mediated transcytosis and BBB disruption-enabled transport induced by photothermal conversion of near-infrared light. By evaluation of the drug release profiles of the delivery system under various conditions, we concluded that incorporation of polydopamine endowed the delivery system with enhanced conductivity and sensitivity, giving sustained (2 hours) and rapid (30 s) drug release in response to epileptiform discharges. Three animal models including acute, continuous and spontaneous seizure models validated that the delivery system could inhibit seizures upon epileptiform abnormalities, treated by one-fifth of the conventional dosage. Complemented with satisfactory biosafety results, this "smart" modality is promising to be an effective and safe strategy to improve the therapeutic index of AEDs for epilepsy.<br>
DOI: 10.5281/zenodo.5748608
title: Data from: Combined analysis of micro RNA and proteomic profiles and interactions in patients with primary lung adenocarcinoma and lung adenocarcinoma brain metastases

description: We carried out an analysis of miRNAs expression profiles and protein spectrums of non-metastatic primary lung adenocarcinoma (LP) and patients with brain metastases (BM) to better explore the molecular basis of BM. Files containing raw data of miRNA expression and proteomic profiles in the manuscript "Combined analysis of micro RNA and proteomic profiles and interactions in patients with primary lung adenocarcinoma and lung adenocarcinoma brain metastases".
DOI: 10.5281/zenodo.5748607
title: Data from: Combined analysis of micro RNA and proteomic profiles and interactions in patients with primary lung adenocarcinoma and lung adenocarcinoma brain metastases

description: We carried out an analysis of miRNAs expression profiles and protein spectrums of non-metastatic primary lung adenocarcinoma (LP) and patients with brain metastases (BM) to better explore the molecular basis of BM. Files containing raw data of miRNA expression and proteomic profiles in the manuscript "Combined analysis of micro RNA and proteomic profiles and interactions in patients with primary lung adenocarcinoma and lung adenocarcinoma brain metastases".
DOI: 10.6073/pasta/ec6281898e12db65a56c0fc624cfb05e
title: Nitrogen mineralization potential in soils collected from the Jornada Basin LTER-I transect and extracted at field collection time, 1989

description: This data package contains nitrogen mineralization data from soils collected along the Jornada Basin LTER (LTER-I) transects in southern New Mexico, USA. These transects are located in a livestock exclosure established in 1982 in the Chihuahuan Desert Rangeland Research Center (CDRRC) and run from the middle of the College Playa up to the foot of Mt. Summerford (2.7 km in length). Prior to the exclosure, the study site was moderately to heavily grazed for the past 100 years. The Treatment transect was treated annually with ammonium nitrate fertilizer (NH4NO3 at 10g N/m2/yr) until 1987. Along each transect, 91 stations, each with a plant intercept line, are spaced at 30 meter intervals. For this dataset, 60 soil samples (total) were collected along the control and fertilized treatment transects and mixed with potassium chloride solution (KCl) on Nov 27, 1989, then filter extracted the following day. The dataset contains a soil moisture correction factor, sample weights, total inorganic nitrogen (NO3+NO2-N), and nitrogen in ammonium (NH4-N) for Week F (field) of nitrogen mineralization potentials. The soil mineralization data complements the biomass harvest measurements that occurred in September 1989 (dataset knb-lter-jrn.210015001). This study is complete.