cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16911389
title: QuiCAT: A Scalable and Flexible Framework for Mapping Synthetic Sequences

description: This Zenodo Entry contains the datasets generated for the quicat manuscript.
description:  

quicat_single_cell_data.tar.gz:

Contains the single cell data used in quicat manuscript.

Six bulk and five clonal primary pancreatic tumor mouse cell lines used for the single cell RNA-seq experiment. The five clonal cell lines were barcoded with Nuclear procode vector kit library (Addgene #1000000197) and isolated as single clones. All eleven cell lines were trypsinized and pooled together in equal amounts, then 5 million cells were fixed according to the protocol for Chromium Fixed RNA Profiling (10x). After fixation, a pool of 1 million cells was used for hybridization with probes, including custom probes, which lasted 19 h. For generation of GEM, 20000 cells were loaded on the chip and library was constructed as described in the guidelines (10x genomics,User guide CG000691). Quality and size analysis of cDNAs and libraries was performed on an Agilent Bioanalyzer 2100 using HS DNA Kit (Agilent). The sample was sequenced with Novaseq PE100 mode (Illumina) following the standard protocol.

Content of the archive:

Cellranger output files to reproduce single-cell analyses in quiCAT paper




barcodes.tsv.gz
whitelisted cells


sample_filtered_feature_bc_matrix.h5
count matrix 


sample_alignments.bam
bam alignment file


sample_alignments.bam.bai
bam alignment index




 

larry_dna.tar.gz:

Contains the DNA sequencing data for LARRY barcoded clonal cell lines used in quicat manuscript.

Unique lineage and RNA recovery (LARRY) DNA barcodes were generated using a modified LARRY barcoding system (Weinreb 2020; Addgene plasmid #140025). This modified construct includes the addition of a puromycin resistance marker, which is connected via a T2A self-cleaving peptide to the EGFP reporter containing a semi-random 16-mer in its 3’UTR. (sequence structure NNNNCTNNNNACNNNN).

Equal numbers of cells from each of the verified clones were pooled and immediately processed for barcode amplification.

Content of the archive:




single_clones directory
NGS sequencing data of single clones before pooling


pooled_clones directory
NGS sequencing data of pooled clones
DOI: 10.15468/dl.wqundb
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Crustacés Branchiopodes Phyllopodes de France",
 "TaxonKey is Branchiopoda"
 ]
}

 The dataset includes 429 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025566-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29949969
title: Factors impacting paediatric VFSS service sustainability and training, an Australian perspective

description: The videofluoroscopic swallow study is a specialised procedure, for which speech-language pathologists require additional post-graduate training. To date, little is known about factors impacting paediatric videofluroscopic swallow study service sustainability. Based on available literature, it is anticipated that staff training is one impacting factor. The primary aim of this study was to explore service manager and speech-language pathologist perspectives on factor/s impacting paediatric videofluroscopic swallow study service sustainability. Secondary aims were to investigate current training practices. Directors/service managers and lead paediatric videofluroscopic swallow study speech-language pathologists from paediatric videofluroscopic swallow study sites across Queensland (Australia) were prospectively recruited to complete a 13-item questionnaire and optional semi-structured focus group. Data were analysed using descriptive statistics and inductive content analysis. Six facilities were represented, with 11 questionnaire responses and eight participants across two focus groups. Two main themes were identified to be impacting paediatric videofluroscopic swallow study service sustainability: a) Training & competency and b) service and infrastructure. Participants identified eight recommendations to improve training and subsequent staffing sustainability. A variety of factors were reported to impact paediatric videofluroscopic swallow study service sustainability, with difficulties with staffing and training reported to underpin many of these issues. Findings highlight the need for structured, flexible, and responsive training opportunities.
DOI: 10.6084/m9.figshare.29949969.v1
title: Factors impacting paediatric VFSS service sustainability and training, an Australian perspective

description: The videofluoroscopic swallow study is a specialised procedure, for which speech-language pathologists require additional post-graduate training. To date, little is known about factors impacting paediatric videofluroscopic swallow study service sustainability. Based on available literature, it is anticipated that staff training is one impacting factor. The primary aim of this study was to explore service manager and speech-language pathologist perspectives on factor/s impacting paediatric videofluroscopic swallow study service sustainability. Secondary aims were to investigate current training practices. Directors/service managers and lead paediatric videofluroscopic swallow study speech-language pathologists from paediatric videofluroscopic swallow study sites across Queensland (Australia) were prospectively recruited to complete a 13-item questionnaire and optional semi-structured focus group. Data were analysed using descriptive statistics and inductive content analysis. Six facilities were represented, with 11 questionnaire responses and eight participants across two focus groups. Two main themes were identified to be impacting paediatric videofluroscopic swallow study service sustainability: a) Training & competency and b) service and infrastructure. Participants identified eight recommendations to improve training and subsequent staffing sustainability. A variety of factors were reported to impact paediatric videofluroscopic swallow study service sustainability, with difficulties with staffing and training reported to underpin many of these issues. Findings highlight the need for structured, flexible, and responsive training opportunities.
DOI: 10.15468/dl.st9pdz
title: Occurrence Download

description: A dataset containing 10690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.89644 44.83761,3.02845 44.83761,3.02845 44.8948,2.89644 44.8948,2.89644 44.83761))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10690 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025568-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1134557
title: Images from an Analytical Buildings Record (level 3) at Abbey View Clinic Boundary Wall, 9-10 Churchyard, Bury St Edmunds, Suffolk, September 2024

description: This collection includes site photographs from a Level 3 Historic Building Recording of the Abbey View Clinic Boundary Wall in Bury St Edmunds, which was undertaken by Cotswold Archaeology during April 2024 and was commissioned by Concertus.
DOI: 10.5281/zenodo.15572102
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250602d Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250602d Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15572103
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250602d Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250602d Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.7910/dvn/rgxxa9
title: Map super-resolution reconstruction

description: Results of map super-resolution reconstruction
DOI: 10.15468/dl.ytckss
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oreamnos americanus (Blainville, 1816))",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021418-250525065834625/datasets/export for details.
DOI: 10.15468/dl.zjd4j8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oreamnos americanus (Blainville, 1816))",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021417-250525065834625/datasets/export for details.
DOI: 10.15468/rcp3pv
title: Indiana University Herbarium, Deam Herbarium

description: The Department of Biology administers the Indiana University Herbarium (IND). Founded in 1885, the herbarium houses over 155,000 specimens of vascular plants, including the collections of Charles C. Deam on which the Flora of Indiana is based.
DOI: 10.15468/dl.7exd6k
title: Occurrence Download

description: A dataset containing 77089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphorbia cyparissias)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 77089 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007985-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dvyqce
title: Loyola University Chicago Herbarium

description: Four thousand dried, mounted specimens, mainly from Minnesota and Illinois, including wetland collections from Cedar Creek Natural History Area (University of Minnesota), Boundary Waters Canoe Area Wilderness (Jitterbug Lake, post blowdown, pre-fire), Glacial Park (McHenry County, IL), Loyola University Retreat and Ecology Campus (McHenry County, IL), as well as student contributions &ndash; emphasis on wetland plants, vascular plants
DOI: 10.15468/dl.mv4g2u
title: Occurrence Download

description: A dataset containing 3576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euphrasia stricta, Euphrasia stricta, Euphrasia stricta, Euphrasia stricta, Euphrasia stricta, Euphrasia stricta, Euphrasia stricta, Euphrasia stricta)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 3576 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008028-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vzkvuf
title: Miami University Turrell Herbarium - Vascular Plants

description: Miami University is the home of Ohio's largest herbarium, the Willard Sherman Turrell Herbarium. The herbarium's holdings of approximately 620,000 specimens are worldwide in both geographical and taxonomic coverage. The collection consists of 330,000 vascular plant specimens, as well as 140,000 bryophytes, 100,000 fungi, 35,000 lichens, 10,000 algae, and 5,000 fossil plants. There are several thousand type specimens contained in the collection, as well as many sets of cryptogamic exsiccatae. Active exchange programs are ongoing with many herbaria worldwide to ensure the continued breadth and depth of the collection. The W.S. Turrell Herbarium Fund is an endowment which benefits the herbarium, and is restricted to support of the research activities of the staff and students in systematic botany.
DOI: 10.15468/dl.949j3e
title: Occurrence Download

description: A dataset containing 10048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falcaria vulgaris, Falcaria rivini)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 10048 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008029-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgz8jv
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lithobium cordatum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 40 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008030-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5tpak
title: Occurrence Download

description: A dataset containing 363450 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((18.09926 41.58084,20.47463 41.58084,20.47463 43.73264,18.09926 43.73264,18.09926 41.58084))"
 ]
}

 The dataset includes 363450 records from 518 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007926-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/iv6y8m
title: Michigan State University

description: The MSU Herbarium was founded in 1863 with the donation of a large collection of plants from Michigan and the eastern U.S. Today, we remain focused on plant and fungal diversity from Michigan, but the collection is also rich in plants from Mexico and southeast Asia, and lichens from the Caribbean and the subantarctic region. With over half a million specimens, the MSU Herbarium is among the 50 largest herbaria in the United States, whereas the lichen collection, with 120,000 accessioned collections, is among the 10 largest in North America and, because of its geographical scope, of international importance.
DOI: 10.21227/akt1-jc70
title: "Data-driven prognostics and health management (PHM) modeling"

description: "Prognostics and Health Management (PHM) is one of the main services encompassed by Industry 4.0. However, the scarcity of failure data due to the nature of machines\u2019 operation is still a challenge to be transposed in this field. Due to recent advances in computing power, simulation, sensing, and networking technologies digital twins allow us to adopt a different approach to this problem: inserting failures into a digital replica of the real asset to train data-driven PHM models. In this work, we propose a general methodology to generate and validate synthetic failure data for PHM purposes. Also, we present an application of the proposed methodology, which produced a synthetic failure dataset validated with real data. In the experiment, we have modeled a smart petroleum well in a commercial computational fluid-dynamics simulator and injected failures into the system by modifying the expected behavior of the equipment to generate synthetic failure data. Then, we assessed the quality of the synthetic data by training machine learning algorithms on them, testing on data from a petroleum plant production, and applying fidelity metrics to verify the necessary improvements to the process. The results show the feasibility of generating useful synthetic data for PHM purposes, and the proposed methodology indicates points of enhancement in the generated data. The presented methodology still has limitations concerning its extrapolation for the general PHM case, and this work also discuss alternatives to overcome these constraints."
DOI: 10.3886/e244867
title: Initial injury-related visits to hospital emergency departments, by sex, age, and intent and mechanism of injury: United States

description: &lt;div class="expandable-text-section forge-typography--body2"&gt;&lt;div class="" style="-webkit-line-clamp: 4; --display-line-count: 4;"&gt;&lt;div&gt;&lt;strong&gt;On December 20 2021, all estimates and standard errors for 2017–2018 were revised in this table to correct programming errors.&lt;/strong&gt;&lt;br&gt;&lt;br&gt;Data on initial injury-related visits to hospital emergency departments, by sex, age, and intent and mechanism of injury. Please refer to the PDF or Excel version of this table in the HUS 2019 Data Finder (&lt;a rel="nofollow external" target="_blank" href="https://www.cdc.gov/nchs/hus/contents2019.htm"&gt;https://www.cdc.gov/nchs/hus/contents2019.htm&lt;/a&gt;) for critical information about measures, definitions, and changes over time. Due to a change in national medical data coding standards in 2015, from the International Classification of Diseases, 9th Revision, Clinical Modification (ICD-9-CM) to the ICD-10-CM, the definition for injuries and injury subcategories changed for the 2017 reporting period and beyond. Results from 2017 and subsequent years should not be compared with previous reporting periods. Any observed changes in trends across this transition period should not be considered. Data for 2016 are not included. Additional information regarding injury definitions and categorization of injuries by mechanism and intent of injury is available at: &lt;a rel="nofollow external" target="_blank" href="https://www.cdc.gov/nchs/injury/injury_tools.htm"&gt;https://www.cdc.gov/nchs/injury/injury_tools.htm&lt;/a&gt;. Note that the data file available here has more recent years of data than what is shown in the PDF or Excel version.&lt;br&gt;&lt;br&gt;SOURCE: NCHS, National Hospital Ambulatory Medical Care Survey. For more information on the National Hospital Ambulatory Medical Care Survey, see the corresponding Appendix entry at &lt;a rel="nofollow external" target="_blank" href="https://www.cdc.gov/nchs/data/hus/hus17_appendix.pdf"&gt;https://www.cdc.gov/nchs/data/hus/hus17_appendix.pdf&lt;/a&gt;.&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;
description: (Downloaded 2026-02-02)
DOI: 10.15468/c9jhs4
title: Northern Illinois University Herbarium

description: The herbarium at NIU is an internationally recognized systematic collection, initiated in the 1960s and enlarged significantly during the 1970s to the present. Holdings presently total about 23,000 specimens of vascular plants plus an additional 8000 bryophytes. A large number of the bryophytes in the collection (about 6000 specimens) are on permanent loan to MO (Missouri Botanic Garden).
Special collections include a definitive collection of the genus Dahlia, which contains holotypes and isotypes plus a thoroughly documented array of hybrids between authenticated wild species. A second important collection is of Arbutus that also includes type material. The troublesome genus Agrimonia is more completely documented at DEK than at any other herbarium in the world. In Zygophyllaceae, there is a substantial collection of species of Guaiacum, for which sequenced marker loci are indicated. The collection also emphasizes grassland species and those for which genetic resources, especially complete plastome sequences, are available.
DEK presently maintains exchange relationships with more than 26 domestic and 6 foreign herbaria. As a consequence, coverage, while emphasizing the flora of Illinois, is worldwide.