cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20736594.v1
title: Distributed Decoding From Heterogeneous 1-Bit Compressive Measurements

description: We develop a communication-efficient distributed estimation for the 1-bit compressive sensing where unknown sparse signals are coded into binary measurements with noises and sign flips. We allow for distinctive sign-flipped probabilities and intensities of noises for measurements collected at different nodes, which raises a heterogeneity issue. We suggest a distributed algorithm through penalized least squares to recover sparse signals. This algorithm is computationally very efficient with only gradient information communicated. The resulting distributed estimate converges after a single iteration even when a lousy initial estimate is provided, and achieves a nearly oracle rate after a constant number of iterations. We prove that, under some mild conditions, with high probability, the distributed estimate approximates the underlying true sparse signal with precision <i>δ</i> after a finite number of iterations, as long as the total sample size <i>N</i> satisfies (s log p)/(δ2N)=O(1), where <i>p</i> is the dimension and <i>s</i> is the number of nonzero elements of the underlying true sparse signals. We establish statistical guarantee for support recovery. Extensive experiments are provided to illustrate the effectiveness of our proposed distributed algorithm. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20715629
title: Statistical Analysis of Locally Parameterized Shapes

description: In statistical shape analysis, the establishment of correspondence and defining shape representation are crucial steps for hypothesis testing to detect and explain local dissimilarities between two groups of objects. Most commonly used shape representations are based on object properties that are either extrinsic or noninvariant to rigid transformation. Shape analysis based on noninvariant properties is biased because the act of alignment is necessary, and shape analysis based on extrinsic properties could be misleading. Besides, a mathematical explanation of the type of dissimilarity, for example, bending, twisting, stretching, etc., is desirable. This work proposes a novel hierarchical shape representation based on invariant and intrinsic properties to detect and explain locational dissimilarities by using local coordinate systems. The proposed shape representation is also superior for shape deformation and simulation. The power of the method is demonstrated on the hypothesis testing of simulated data as well as the left hippocampi of patients with Parkinson’s disease and controls. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20715629.v2
title: Statistical Analysis of Locally Parameterized Shapes

description: In statistical shape analysis, the establishment of correspondence and defining shape representation are crucial steps for hypothesis testing to detect and explain local dissimilarities between two groups of objects. Most commonly used shape representations are based on object properties that are either extrinsic or noninvariant to rigid transformation. Shape analysis based on noninvariant properties is biased because the act of alignment is necessary, and shape analysis based on extrinsic properties could be misleading. Besides, a mathematical explanation of the type of dissimilarity, for example, bending, twisting, stretching, etc., is desirable. This work proposes a novel hierarchical shape representation based on invariant and intrinsic properties to detect and explain locational dissimilarities by using local coordinate systems. The proposed shape representation is also superior for shape deformation and simulation. The power of the method is demonstrated on the hypothesis testing of simulated data as well as the left hippocampi of patients with Parkinson’s disease and controls. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20715629.v1
title: Statistical analysis of locally parameterized shapes

description: In statistical shape analysis, the establishment of correspondence and defining shape representation are crucial steps for hypothesis testing to detect and explain local dissimilarities between two groups of objects. Most commonly used shape representations are based on object properties that are either extrinsic or noninvariant to rigid transformation. Shape analysis based on noninvariant properties is biased because the act of alignment is necessary, and shape analysis based on extrinsic properties could be misleading. Besides, a mathematical explanation of the type of dissimilarity, e.g., bending, twisting, stretching, etc., is desirable. This work proposes a novel hierarchical shape representation based on invariant and intrinsic properties to detect and explain locational dissimilarities by using local coordinate systems. The proposed shape representation is also superior for shape deformation and simulation. The power of the method is demonstrated on the hypothesis testing of simulated data as well as the left hippocampi of patients with Parkinson’s disease and controls.
DOI: 10.6084/m9.figshare.21338208
title: Tab. A12.6_PL_RRM1-KH2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-KH2-LPXTG
DOI: 10.6084/m9.figshare.21338208.v1
title: Tab. A12.6_PL_RRM1-KH2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-KH2-LPXTG
DOI: 10.6084/m9.figshare.21338325
title: Tab. A12.7_PL_RRM1-KH2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-KH2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21338325.v1
title: Tab. A12.7_PL_RRM1-KH2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-KH2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21338397
title: Tab. A12.8_PL_RRM1-2-LPQT-GG-KH1-2(KH1-2_15N)

description: Peak list (PL) for (1H, 15N-) HSQC of ligation product IMP3 RRM1-2-LPQT-GG-KH1-2 with KH1-2 segmentally 15N-labelled
DOI: 10.6084/m9.figshare.21338397.v1
title: Tab. A12.8_PL_RRM1-2-LPQT-GG-KH1-2(KH1-2_15N)

description: Peak list (PL) for (1H, 15N-) HSQC of ligation product IMP3 RRM1-2-LPQT-GG-KH1-2 with KH1-2 segmentally 15N-labelled
DOI: 10.6084/m9.figshare.21338505
title: Tab. A12.9_PL_RRM1-2-LPQT-GG-KH1-2(RRM1-2_15N)

description: Peak list (PL) for (1H, 15N-) HSQC of ligation product IMP3 RRM1-2-LPQT-GG-KH1-2 with RRM1-2 segmentally 15N-labelled
DOI: 10.6084/m9.figshare.21338016
title: Tab. A12.3_PL_G-KH1-2

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 G-KH1-2
DOI: 10.6084/m9.figshare.21338088
title: Tab. A12.4_PL_KH1-2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 KH1-2-LPXTG
DOI: 10.6084/m9.figshare.21338145
title: Tab. A12.5_PL_KH1-2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 KH1-2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21338145.v1
title: Tab. A12.5_PL_KH1-2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 KH1-2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21338505.v1
title: Tab. A12.9_PL_RRM1-2-LPQT-GG-KH1-2(RRM1-2_15N)

description: Peak list (PL) for (1H, 15N-) HSQC of ligation product IMP3 RRM1-2-LPQT-GG-KH1-2 with RRM1-2 segmentally 15N-labelled
DOI: 10.6084/m9.figshare.21337839
title: Tab. A12.2_PL_RRM1-2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21337839.v1
title: Tab. A12.2_PL_RRM1-2-LPXTG-H6

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-2-LPXTG-6xHis
DOI: 10.6084/m9.figshare.21338088.v1
title: Tab. A12.4_PL_KH1-2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 KH1-2-LPXTG
DOI: 10.6084/m9.figshare.21337635
title: Tab. A12.1_PL_RRM1-2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-2-LPXTG
DOI: 10.6084/m9.figshare.21338016.v1
title: Tab. A12.3_PL_G-KH1-2

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 G-KH1-2
DOI: 10.6084/m9.figshare.21337635.v1
title: Tab. A12.1_PL_RRM1-2-LPXTG

description: Peak list (PL) for (1H, 15N-) HSQC of IMP3 RRM1-2-LPXTG
DOI: 10.6073/pasta/5257cf486a501a50f83890bff2f1d9bb
title: Adminstrative boundary, Andrews Experimental Forest, 1997 survey, 2009 update

description: This database contains the spatial representations for the administrative boundary of the HJ Andrews Experimental Forest. This database was derived from ground based surveys of the Andrews in 1997, based on the Experimental Forest Establishment report. Field personnel determined ridge tops. The original data was updated in 2009 (entity 2) and contains the boundaries of watershed 9, 10. and 11(which are outside Lookout Basin) as updated in 2009, in addition to the Lookout Creek Basin.
DOI: 10.25387/g3.20092538
title: Supplemental Material for Dyson et al., 2022

description: <strong>Supporting data for "Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective population sizes"</strong> Authors Carl J. Dyson; Aaron Pfennig; Daniel Ariano-Sánchez; Joseph Lachance; Joseph R. Mendelson III; Michael A. D. Goodisman<br> Summary We sequenced the genome of a male Guatemalan Beaded Lizard from Zoo Atlanta using PacBio Sequel II SMRTCell sequencing platform. Sequencing insert libraries were created consisting of 15-20 kb sequences and 30+ kb sequences, and underwent on-site quality assessment and cleanup prior to sequencing. We obtained 232 Gbp of raw sequencing data (86x depth). The raw reads were assembled into a draft genome with a total length of 2.31 Gb. The assembly comprised 3,551 contigs, 83% of which were 50 kb or larger in size. Evaluation of the draft assembly produced a contig N50 of 1,358,783 bp. The overall GC content of the genome was estimated to be 45.05%. Approximately 57.54% of the genome consisted of identifiable repetitive DNA. We predicted 31,411 protein-coding genes and 32,205 distinct mRNAs. This draft genome of this critically endangered species can contribute to conservation efforts by providing information on historical changes in population size, and help further our understanding of an understudied taxon within the venomous lizards. Files <strong>Heloderma_charlesbogerti_genomic.fasta.gz:</strong> Assembled genome sequences of Heloderma charlesbogerti using Flye. <strong>Heloderma_charlesbogerti_genomic.gff.gz:</strong> Gene features in GFF format. Protein-coding genes were predicted by BRAKER2 and tRNA genes by tRNAscan-SE2. <strong>Heloderma_charlesbogerti_cds_from_genomic.fna.gz:</strong> Nucleotide sequences of predicted protein-coding regions, <strong>Heloderma_charlesbogerti_protein.faa.gz:</strong> Amino acid sequences of predicted protein-coding regions, <strong>Heloderma_charlesbogerti_protein.interproscan.gff.gz:</strong> Interproscan annotations of predicted proteins in GFF format. <strong>Heloderma_charlesbogerti_protein.interproscan.tsv.gz:</strong> Interproscan annotations of predicted proteins in tab-separated format. <strong>Heloderma_charlesbogerti_RepeatMasker.gff.gz:</strong> Repeat annotation in GFF format. Repeat annotation was done de novo using RepeatModeler and RepeatMasker. <strong>Heloderma_charlesbogerti_RepeatMasker.out.gz:</strong> RepeatMasker annotation. <strong>Heloderma_charlesbogerti_RepeatMasker.tbl.gz:</strong> Summary of RepeatMasker annotation. <strong>Heloderma_charlesbogerti_TRF.gff.gz:</strong> Long tandem repeat anotation using TRF. <strong>Heloderma_charlesbogerti_genomic_softmasked.fasta.gz:</strong> Softmasked genome sequences of Heloderma charlesbogerti. Combined annotation of RepeatMasker and TRF were used for softmasking.
DOI: 10.25387/g3.20092538.v1
title: Supplemental Material for Dyson et al., 2022

description: Description of file contents: <br> predicted_genes_trnas_merged.gff: Contains the merged prediction of Braker 2 and tRNAscan-SE in GFF3 format augustus.hints.codingseq: Contains nucleotide sequences of protein-coding genes predicted by Braker 2 augustus.hints.aa: Contains amino acid sequences of protein-coding genes predicted by Braker 2 GBL_genome_assembly.fasta: Contains the unmasked draft genome assembly of H. charlesbogerti GBL_genome_assembly.fasta.combined.masked: Contains the softmasked draft genome assembly of H. charlesbogerti. De-novo masking was performed using RepeatModeler & RepeatMasker and TRF for the masking of tandem repeats with large periods. augustus.hints.aa.cleaned.tsv: Contains functional annotations of protein-coding genes predicted by Braker 2. Functional annotation was done with InterProScan summary_dnds.tab: dN/dS for all branches in the tree comprising H. charlesbogerti, V. komodoensis, A. carolinensis, D. gracilis. The suffix "_neutral" refers to a simple model that calculates one dN/dS for the entire tree and the suffix "_selection" refers to a more complex model that calculates one dN/dS for each branch in the tree. venom_alignments_hmmer_dnds.tab: Contains a list of protein-coding genes annotated by Braker 2 that show significant similarity to known Heloderma or Viper venoms. Homology search was done with hmmscan and dN/dS ratios for putative venom genes in the GBL were added from previous analysis if available.
DOI: 10.13145/bacdive18346.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18347.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18348.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18349.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18350.20230509.8
title: Polyangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18351.20230509.8
title: Polyangium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18352.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18353.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18354.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18355.20230509.8
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18356.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18357.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18358.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18359.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18360.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18361.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18362.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18363.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18364.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18365.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18366.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18367.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18368.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18369.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18370.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18371.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18372.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18373.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18374.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18375.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18376.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18377.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18378.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18379.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18380.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18381.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18382.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18383.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.7215107
title: Diminishing returns on labor in the global marine food system: Dataset S1 and code for analysis

description: Dataset on the number of marine fishers 1950-2015 accompanying the manuscript "Diminishing returns on labor in the global marine food system" by K. J. N. Scherrer, Y. Rousseau, L. C. L. Teh, U. R. Sumaila and E. D. Galbraith. Includes 1) script for data analysis, 2) processed fisheries labor data set, 3) separate data file with average socioeconomic indicators by country needed for analysis, 4) data documentation.
DOI: 10.5281/zenodo.7215108
title: Diminishing returns on labor in the global marine food system: Dataset S1 and code for analysis

description: Dataset on the number of marine fishers 1950-2015 accompanying the manuscript "Diminishing returns on labor in the global marine food system" by K. J. N. Scherrer, Y. Rousseau, L. C. L. Teh, U. R. Sumaila and E. D. Galbraith. Includes 1) script for data analysis, 2) processed fisheries labor data set, 3) separate data file with average socioeconomic indicators by country needed for analysis, 4) data documentation.
DOI: 10.13145/bacdive18384.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18385.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18386.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18387.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18388.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive18389.20230509.8
title: Corallococcus coralloides

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.