cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57907/mirri/p7ykco/lvmzsj
title: MIRRI0085860.json

description: Strain json file
DOI: 10.57907/mirri/pb8ggc
title: MIRRI0085911

description: Organism type: Yeast ; Taxon name: Sporidiobolus salmonicolor ; Collection: CBS 13536
DOI: 10.57907/mirri/pgzvbe/zurndy
title: MIRRI0085858.json

description: Strain json file
DOI: 10.57907/mirri/plw4c0
title: MIRRI0085930

description: Organism type: Yeast ; Taxon name: Blastobotrys parvus ; Collection: CBS 13559
DOI: 10.57907/mirri/ppgpdy/bqwpsv
title: MIRRI0085964.json

description: Strain json file
DOI: 10.57907/mirri/qe33ax
title: MIRRI0085924

description: Organism type: Yeast ; Taxon name: Sporidiobolus salmonicolor ; Collection: CBS 13552
DOI: 10.6084/m9.figshare.26499166.v2
title: Patterns of early post-disturbance reorganization in Central European forests

description: Electronic supplementary informationArticle: <b>Patterns of early post-disturbance reorganization in Central European forests, </b>DOI: 10.1098/rspb.2024.0625, published by <i>Proceedings of the Royal Society B: Biological Sciences</i>Authors: Rupert Seidl, Mária Potterf, Jörg Müller, Monica G. Turner, Werner Rammer<br><b>Abstract</b>Disturbances catalyze change in forest ecosystems, and a climate-driven increase in disturbance activity could accelerate forest reorganization. Here, we studied post-disturbance forests after the biggest pulse of tree mortality in Central Europe in at least 170 years, caused by drought and bark beetle (Scolytinae) outbreaks in 2018 – 2020. Our objectives were to characterize the early state of tree regeneration after mortality, quantify patterns of reorganization relative to undisturbed reference conditions, and assess how management and patch size affect forest reorganization after disturbance. We surveyed 1,244 plots in 120 patches under managed (salvage-logged, often planted) and unmanaged (deadwood remaining on site, no planting) conditions in Germany. We found that regeneration density on disturbed sites was high (median 11,897 stems ha-1), resulting from a cohort of advance regeneration. Disturbances were strong drivers of change, with indications for resilience on only 36.3% of patches. Reassembly (i.e., a change in species composition) was the dominant pattern of reorganization (61.5%), and <i>Picea abies</i> forests changed most strongly. Post-disturbance management facilitated forest change, particularly promoting a change in species composition. The strength of reorganization increased with patch size. We conclude that the recent wave of tree mortality will likely accelerate forest change in Central Europe.<b>Files list:</b><br>code_analysis.zip - tree vegetation data processing in RinputData.zipoutputData.zip<br><b>Data contact:</b>Maria Potterf maria.potterf@tum.deWerner Rammer werner.rammer@tum.de
DOI: 10.6084/m9.figshare.16358961.v1
title: Data on climate-related financial policies in G20 countries

description: Data on climate-related financial policies in G20 countries (excluding EU) and focused on the period 2000-2020
DOI: 10.6084/m9.figshare.27930855.v1
title: City-level emergy metabolism accounts for China’s 281 cities from 2000 to 2020

description: This dataset includes 41 types energy and resource metabolic flows of 281 prefectural-level China’s cities in the time range of 2000-2020. This database detailing urban emergy flows including production, consumption, and import of resources.
DOI: 10.6084/m9.figshare.25632636.v2
title: EXALT Parasite Dynamics

description: Post-treatment Plasmodium falciparum parasite dynamics as part of the EXALT clinical trial. Data includes microscopy, 18S rRNA, SBP1 mRNA parasite densities. Amplicon sequence data for CPMP, CPP, and CSP includes haplotype IDs and read data for all time points throughout follow-up. R code for the DADA2 analysis is also provided as a text document.
DOI: 10.6084/m9.figshare.23968320.v1
title: <b>Driving </b><b>rural industry revitalization </b><b>in the digital economy era</b>

description: Both digital infrastructure and rural industry revitalization use the entropy method to measure scores. All other indicators are measured using existing data.
DOI: 10.6084/m9.figshare.7599749.v1
title: winter precipitation

description: Data files which are used for figure 5 in the extended abstract ems-2018<br>
DOI: 10.6084/m9.figshare.22083011.v4
title: disparate-impact-differential-treatment-in-judicial-districts

description: Code and data for manuscript "Federal Criminal Sentencing: Race-Based Disparate Impact and Differential Treatment in Judicial Districts." Data is derived from United States Sentencing Commission Individual Offender Files, 2006 – 2020.
DOI: 10.6084/m9.figshare.5655970.v1
title: Extreme Quantile Estimation for Autoregressive Models

description: A quantile autoregresive model is a useful extension of classical autoregresive models as it can capture the influences of conditioning variables on the location, scale, and shape of the response distribution. However, at the extreme tails, standard quantile autoregression estimator is often unstable due to data sparsity. In this article, assuming quantile autoregresive models, we develop a new estimator for extreme conditional quantiles of time series data based on extreme value theory. We build the connection between the second-order conditions for the autoregression coefficients and for the conditional quantile functions, and establish the asymptotic properties of the proposed estimator. The finite sample performance of the proposed method is illustrated through a simulation study and the analysis of U.S. retail gasoline price.
DOI: 10.6084/m9.figshare.22434913.v1
title: Dataset for 'Influence of polyvinylpyrrolidone (PVP) in the synthesis of luminescent NaYF4:Yb,Er upconversion nanoparticles',

description: Dataset for a manuscript entitled 'Influence of polyvinylpyrrolidone (PVP) in the synthesis of luminescent NaYF4:Yb,Er upconversion nanoparticles', currently submitted for review in Methods and Application of Fluorescence (IOP publishing). <br> Data included: <br> Powder X-ray Diffraction (PXRD) data. Scanning Electron Microscopy (SEM) images. Scanning Transmission Electron Microscopy (STEM) images. High-resolution Transmission Electron Microscopy (HR-TEM) images. Upconversion luminescnece data. Energy dispersive spectroscopy (EDS) data.
DOI: 10.6084/m9.figshare.26151754.v1
title: Characteristics of foot alignment in high school soccer players with chronic ankle instability.

description: Study design: Cross-sectional studyObjective: To clarify the characteristics of foot alignment by CAI in high school soccer players and the relationship between foot alignment and CAITBackground: There is no consensus on foot alignment in CAI, and the relationship with severity is unclearMethod and setting: 63 high school soccer club members were divided into a CAI group (n=30) and a control group (n=33), and foot alignment was measured using the Navicular Drop Test (NDT), Weight Bearing Lunge Test (WBLT), calcaneal angle, and Leg Heel Angle (LHA). The difference in foot alignment between the CAI group and the healthy group was examined by t-test, and multiple regression analysis was used to extract factors related to CAIT.Results: Statistically significant differences were observed between the CAI group and the control group in the NDT, WBLT, calcaneal angle, and LHA (p&lt;0.001). In a multiple regression analysis with CAIT as the dependent variable, single-leg LHA (β=1.48, p&lt;0.001) and NDT (β=-0.78, p&lt;0.001) were extracted for the entire group (n=63). Furthermore, multiple regression analysis was performed on the two items of single-leg LHA and NDT extracted for the entire group of 63 participants for the CAI group and the control group, and NDT (β=-0.60, p&lt;0.01) was extracted for the CAI group. No items were extracted for the control group.Conclusion: CAI by high school soccer players was shown to have foot valgus alignment compared to the control group. Furthermore, there was a statistically significant difference between CAIT and NDT, suggesting that the more severe the CAI, the lower the medial longitudinal arch.
DOI: 10.6084/m9.figshare.28861061.v3
title: Maternal Infant Transfer of SARS-CoV-2 Antibodies

description: This article discusses the results of a study conducted on the transfer of SARS-CoV-2 antibodies to an infant through gestation and lactation.
DOI: 10.6084/m9.figshare.27303891.v3
title: Supplementary Material for: The Use of Automated Insulin Delivery Around Physical Activity and Exercise in Type 1 Diabetes: A Position Statement of the European Association for the Study of Diabetes (EASD) and the International Society for Pediatric and Adolescent Diabetes (ISPAD)

description: Regular physical activity and exercise (PA) are cornerstones of diabetes care for individuals with type 1 diabetes (T1D). In recent years, the availability of automated insulin delivery (AID) systems has improved the ability of people with T1D to achieve the recommended glucose target ranges. PA provide additional health benefits but can cause glucose fluctuations, which challenges current AID systems. While an increasing number of clinical trials and reviews are being published on different AID systems and PA, it seems prudent at this time to collate this information to develop a position statement on the topic. This joint EASD ISPAD position statement reviews current evidence on AID systems and offers detailed clinical practice points for managing PA in children, adolescents, and adults with T1D using AID technology. It discusses each available AID system individually and provides guidance on their use for PA. Additionally, it addresses different glucose responses to PA and offers stratified therapy options to maintain glycaemia within the target range for these age groups.
DOI: 10.6084/m9.figshare.28776845.v1
title: Effect of working patterns on spatial variation in outdoor leisure activity of fixed-location workers: A case study of Nanjing, China

description: The data used in research<i> Effect of working patterns on spatial variation in outdoor leisure activity of fixed-location workers: A case study of Nanjing, China</i>
DOI: 10.6084/m9.figshare.6225806.v2
title: ZmbZIP4-ChIPseq Data

description: The construct pCAMBIA1302-35S::ZmbZIP4-GFP was used for transformation of Maize inbred Qi319 young embryo via a gene gun (Bio-Rad). Stable transgenetic maize and the monoclonal antibody of GFP were used for ChIP-seq assay. The details of ChIP were as described by Kaufmann et al. (Kaufmann and Al, 2010). Sequencing platform: Illumina Hiseq 4000. Aligner and parameter: Clean Parameter “soap_mm_gz -p 4 -v 5 -s 35 -m 0 -x 600”. Peak caller and parameter: Peak Calling Parameter “macs14 -g 411831487 -p 1e-5 -w --space 50 -m 10, 30”. <br>
DOI: 10.6084/m9.figshare.25203950.v2
title: <b>Phylogenetic</b> <b>inferences and historical biogeography of Onocleaceae</b>

description: The multiple sequence alignments, concatenated alignments, and phylogenetic trees for Phylogenetic inferences and historical biogeography of Onocleaceae
DOI: 10.17608/k6.auckland.19350854.v1
title: DRESS Data and Analyses

description: These data, analyses, and scripts are provided alongside our manuscript published in the Journal of Clinical Psychiatry entitled: Intravenous scopolamine and active-placebo glycopyrrolate show similar, large antidepressant responses when blinding is maintained in randomised trial. This publication is in-press and we will add the doi link when it is published.
DOI: 10.6084/m9.figshare.5739627.v1
title: Genes duplicated in Paedocypris genomes

description: This dataset contains the alignments and trees for all duplicated genes found in both <i>Paedocypris</i> genomes.
DOI: 10.6084/m9.figshare.20020064.v1
title: Stress, Coping Strategies and Quality of Life: A Survey of Brazilian Managers

description: This study analyzes the relationship between perceived stress at work, the coping strategy adopted, and the quality of life of active managers in Brazilian organizations. Three instruments were applied together: Karasek's Job Stress Scale, Latack's Coping with Job Stress and WHO'S WHOQOL-Bref to a sample of 1290 managers throughout Brazil. An analysis of the correlation between the variables stress, quality of life and coping strategy was applied. To further evaluate the relationship between the three dimensions of interest, linear and logistic regression models were developed. The findings show that most managers find themselves under a high stress level, but share good social support and have good perceptions about their quality of life. Most use control strategies to cope with stress. Control strategies and symptom management significantly influence the perception of quality of life, whereas avoidance strategies imply a decrease in this perception. Managers with jobs classified as high strain (Karasek & Theorell, 1990) tend to have a poorer quality of life, even when moderated by social support.
DOI: 10.6084/m9.figshare.9900896.v1
title: Machine Learning approach for Candida albicans Fluconazole Resistance detection using Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry

description: Peak intensity matrices used in the project : Machine Learning approach for <i>Candida albicans</i> Fluconazole Resistance detection using Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry
DOI: 10.6084/m9.figshare.20160380.v1
title: Non-invasive datasets.xlsx

description: 2D GC data tables in excel sheet.
DOI: 10.6084/m9.figshare.28728800.v2
title: Effect of sediment-induced density stratification on capacity concentration

description: Suspended sediment transport is one of the crucial processes in shaping geomorphology. Therefore, understanding the governing physical mechanisms that drive suspended sediment transport is essential. In coastal and shelf environments, sediment-induced density stratification is hypothesized to be the primary regulating mechanism of maximum suspended sediment load. In contrast, fluvial sediment transport studies suggest that density stratification is significant only in alluvial rivers with mild bed slopes; otherwise sediment mass exchange at the bed regulates suspended sediment load. This study develops new relationships to quantify suspended sediment load and determine the conditions under which sediment transport is governed by density stratification versus sediment mass exchange at the bed.The data shared includes scripts that generate the figures in Ozdemir et al. (2025)* and ancillary input and post-processing files that helped obtain the results.*Ozdemir, C. E., Nieh, T-J., and Yue. L. (2025) Contrasting Controls on Suspended Sediment Load in Coastal and Fluvial Systems: Sediment-Induced Density Stratification vs. Mass Exchange at the Bed. Geophysical Research Letters (in review).<br>
DOI: 10.6084/m9.figshare.5104621.v1
title: Supplementary Material for: Analyses of the <i>vrl</i> Gene Cluster in <i>Desulfococcus multivorans</i>: Homologous to the Virulence-Associated Locus of the Ovine Footrot Pathogen <i>Dichelobacter nodosus</i> Strain A198

description: Major parts of the virulence-associated<i> vrl</i> locus known from the gammaproteobacterium <i>Dichelobacter nodosus</i>, the causative agent of ovine footrot, were analyzed in the genome of the sulfate-reducing deltaproteobacterium <i>Desulfococcus multivorans</i>. In the genome of <i>D. multivorans</i> 13 of the 19 <i>vrl</i> genes described for <i>D. nodosus</i> are present and highly conserved with respect to gene sequence and order. The <i>vrl</i> locus and its flanking regions suggest a bacteriophage-mediated transfer into the genome of <i>D. multivorans</i>. Comparative analysis of the deduced Vrl proteins reveals a wide distribution of parts of the virulence-associated <i>vrl</i> locus in distantly related bacteria. Horizontal transfer is suggested as driving mechanism for the circulation of the <i>vrl</i> genes in bacteria. Except for the <i>vrlBMN</i> genes <i>D. multivorans</i> and <i>Desulfovibrio desulfuricans</i> G20 together contain all <i>vrl</i> genes displaying a high degree of similarity. For <i>D. multivorans</i> it could be shown that guanine plus cytosine (GC) content, GC skew, di-, tri- or tetranucleotide distribution did not differ between the<i> vrl </i>locus and its flanking sequences. This could be a hint that the <i>vrl</i> locus originated from a related organism or at least a genome with similar characteristics. The conspicuous high degree of conservation of the analyzed <i>vrl</i> genes may result from a recent transfer event or reflect a function of the <i>vrl</i> genes, which is still unknown and not necessarily disease associated. The latter is supported by the evidence for expression of the <i>vrl</i> genes in <i>D. multivorans</i>, which has not been described as pathogen or to be associated to any disease pattern before.
DOI: 10.6084/m9.figshare.21897348.v1
title: Tercer criterio Moriyama

description: Dataset tercer criterio Moriyama
DOI: 10.6084/m9.figshare.757830.v1
title: Illness in childhood predicts face preferences in adulthood

description: Dataset, Uncorrected manuscript, R analysis code, and variable information for: Illness in childhood predicts face preferences in adulthood (de Barra et al, 2013, Evolution and Human Behaviour)
DOI: 10.6084/m9.figshare.13365329.v1
title: Wang et al. —— Den characteristics and ecological significance of Marmota himalayana .xlsx

description: Den characteristics and ecological significance of Marmota himalayana on the Qinghai-Tibet Plateau
DOI: 10.6084/m9.figshare.25772016.v1
title: 基于RF模型预测的地下水深度数据集

description: 在这里，我们使用大量地下水观测样本，以及来自全球土地数据同化系统（GLDAS）和重力恢复与气候实验（GRACE）的数据集，建立了一种机器学习方法——随机森林——用于预测中国黄河流域的区域地下水位。我们证明了该模型的鲁棒性，在校准模式下R²为0.95，在10倍交叉验证模式下R²为0.91±0.009。
DOI: 10.6084/m9.figshare.28787909.v1
title: Table 2

description: Vehicle Specifications for Simulation.
DOI: 10.6084/m9.figshare.22643068.v2
title: The Expression Ratio (HN-ratio) of Gene Expression Under Heat-stress and Non-stress Conditions in Human and Mouse.

description: After quantifying expression using the analysis pipeline ikra (https://github.com/yyoshiaki/ikra), expression ratios (HN-ratios) were calculated for data collected in pairs of HS and non-treatment conditions. The HN-ratios calculated for all genes were then classified as "upregulated," "downregulated," or "unchanged" if neither threshold was met, according to a defined threshold (5-fold or 1/5-fold in this study). This classification facilitates the interpretation of complicated gene expression data.<br>Gene expression data retrieval, processing, and quantification were performed using ikra (ver. 2.0.1), an automated human and mouse RNA-seq data analysis pipeline. Ikra is a tool that can automatically perform all the following processes: retrieval of FASTQ format files using the fasterq-dump program in the NCBI SRA tool kit (ver. 3.0.0), read quality control, and adapter trimming using Trim_galore (ver. 0.6.6) and transcript quantification using Salmon (ver. 1.9.0). The reference sequence sets of human GENCODE Release 37 (GRCh38.p13) and mouse GENCODE Release 26 (GRCm39) were used. HN-ratio was calculated using codes used in previous papers (https://github.com/no85j/hypoxia_code).<br>
DOI: 10.6084/m9.figshare.12116286.v4
title: Danish-German Jerash Northwest Quarter Project - Bibliography

description: Full list of publications of the Danish-German Jerash Northwest Quarter Project of the Universities of Aarhus and Münster
DOI: 10.6084/m9.figshare.20312664.v2
title: Study Sample ClinicalTrials.gov Search Results, Reference Sample ClinicalTrials.gov Search Results, and Coding Data

description: ClinicalTrials.gov search results for the Study Sample and Reference Sample in the manuscript titled, "Characterization of Key Information Sections in Informed Consent Forms Posted on ClinicalTrials.gov." Coding data for ICFs and key information sections in the Study Sample.
DOI: 10.6084/m9.figshare.20310990.v1
title: metadata_Clement_TCR

description: Metadata for the clonotype tables stored in this project
DOI: 10.6084/m9.figshare.25712856.v1
title: Densecall models

description: Densecall is a basecalling component of DEMINERS, a comprehensive machine learning framework designed to enhance the capabilities of multiplexed nanopore RNA sequencing. Utilizing an optimized Convolutional Neural Network (CNN) architecture, Densecall exceeds the performance of traditional Direct RNA Sequencing (DRS) base callers. It offers specialized training paths for species-specific models, which enhance accuracy by 2.6% compared to general models, making it particularly effective for complex biological datasets.
DOI: 10.6084/m9.figshare.4986548.v1
title: 1D MKP aproximace funkce

description: 1D aproximace funkce pomoci MKP - vyukovy text
DOI: 10.6084/m9.figshare.9897182.v1
title: Supplementary Material for: A Clinico-Radiological Study of Cerebral Amyloid Angiopathy-Related Inflammation

description: <b><i>Objective:</i></b> To describe the clinico-radiological features and long-term prognosis in patients with cerebral amyloid angiopathy-related inflammation (CAA-ri). <b><i>Methods:</i></b> Twenty-eight CAA-ri patients were recruited retrospectively from 6 neurological centers. We recorded the clinico-radiological and biological data, at baseline and during follow-up. Baseline characteristics associated with relapse risk and prognosis were assessed. <b><i>Results:</i></b> Five patients had pathologically confirmed CAA-ri whereas 23 had probable (<i>n</i> = 21) or possible (<i>n</i> = 2) CAA-ri. The mean age was 72 years; main clinical symptoms included confusion (54%), hemiparesis (36%), and aphasia (29%). Cerebral MRI disclosed a brain parenchymal lesion (89%), which was usually multifocal (82%) and bilateral (89%). It was associated with gadolinium enhancement (84%), small ischemic lesions (39%), cortical superficial siderosis (CSS; 50%), and a high number of microbleeds (mean 240 ± 277). An isolated leptomeningeal involvement was observed in 3 patients with pathological confirmation. Despite a favorable initial evolution after treatment, we observed a 42% risk of relapse, mostly within the first year (83%). After a mean follow-up of 2 years, 29% died and 25% had a marked disability. Disseminated CSS was associated with death. <b><i>Conclusion:</i></b> Despite an apparently favorable initial evolution, CAA-ri is characterized by a poor prognosis. Diagnostic criteria should consider patients with isolated leptomeningeal involvement.
DOI: 10.6084/m9.figshare.26653054.v1
title: Novel euthanasia technique for zebrafish using electric shock in standard group housing aquaria

description: Novel euthanasia technique for zebrafish using electric shock in standard group housing aquariaUlla Saarinen1*, Erika Sundell1, Lynne Sneddon2 & Albin Gräns11 Swedish University of Agricultural Sciences, Department of Applied Animal Science and Welfare2 University of Gothenburg, Department of Biological & Environmental SciencesScientific Reports, 2025
DOI: 10.6084/m9.figshare.24597126.v1
title: Source data

description: These data are used for further analyses and building figures.
DOI: 10.6084/m9.figshare.25203368.v1
title: GIS and MEDSLIK-II Based Oil Spill Risk Assessment Data for Jiaozhou Bay

description: This dataset encompasses the core analytical components used in the quantitative risk assessment of oil spills along the coastline of Jiaozhou Bay. It includes historical oil spill records, environmental sensitivity indexes (ESI), simulated oil spill trajectories based on the MEDSLIK-II model, and GIS-based shoreline vulnerability mappings. This comprehensive dataset supports the integration of GIS techniques and advanced oil spill modeling to identify high-risk zones, enabling strategic mitigation and preparedness planning in marine and coastal environments.