cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.41vn01v
title: Data from: The lunar cycle drives migration of a nocturnal bird

description: Every year billions of seasonal migrants connect continents by
 transporting nutrients, energy and pathogens between distant communities
 and ecosystems. For animals that power their movements by endogenous
 energy stores, the daily energy intake rates strongly influence the speed
 of migration. If access to food resources varies cyclically over the
 season, migrants sensitive to changes in daily energy intake rates may
 adjust timing of migration accordingly. As an effect, individuals
 adjusting to a common temporal cycle are expected to approach synchrony in
 foraging and movement. A large-scale periodic pattern, such as the
 dark-light cycle of the moon, could thus synchronize migrations across
 animal populations. However, such cyclic effects on the temporal
 regulation of migration has not been considered. Here we show the temporal
 influence of the lunar cycle on the movement activity and migration
 tactics in a visual hunting nocturnal insectivore and long-distance
 migrant, the European nightjar Caprimulgus europeaus. We found that the
 daily foraging activity more than doubled during moon-lit nights, likely
 driven by an increase in light-dependent fuelling opportunities. This
 resulted in a clear cyclicity also in the intensity of migratory movements
 with occasionally up to 100 % of the birds migrating simultaneously
 following periods of full moon. We conclude that cyclic influences on
 migrants can act as an important regulator of the progression of
 individuals, and synchronise pulses of migratory populations, with
 possible downstream effects on associated communities and ecosystems.
description: activity
 dataTable with individual
 flight activity data as registered by loggers with
 accelereometers.
DOI: 10.5281/zenodo.18393330
title: limosa_fedoa_spades_01.fasta.gz
DOI: 10.5281/zenodo.18393331
title: limosa_fedoa_spades_01.fasta.gz
DOI: 10.15468/dl.9hepgk
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Seyrigia gracilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 72 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001884-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6086/d1sm1s
title: #Blackwomanhood

description: The #blackwomanhood Twitter chat took place on May 10th, 2018. It was a
 discussion around the syllabus for the Black Womanhood course taught by
 Martha Jones and Jessica Marie Johnson at Johns Hopkins
 University. http://dh.jmjafrx.com/2018/01/27/black-womanhood-the-syllabus/ 
description: This dataset of tweet ids was collected on May 10th, 2018 using
 the DocNow appraisal tool. app.docnow.io   
description: Twitter only allows the sharing of large sets of tweet ids. You
 can download the DocNow Hydrator application to turn the ids back into the
 original tweets. When you do this you will not get back back any tweets
 that have been deleted, per Twitter policy. The Hydrator application can
 be found here: https://github.com/DocNow/hydrator
DOI: 10.15468/dl.g6kj7m
title: Occurrence Download

description: A dataset containing 8056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bryophyta, Marchantiophyta, Anthocerotophyta)",
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "CollectionCode is PACA-BRYOPHYTES"
 ]
}

 The dataset includes 8056 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001883-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6078/d1wh41
title: Berkeley High Resolution (BEHR) OMI NO2 - Native pixels, daily profiles

description: The BEHR OMI NO2 product reprocesses tropospheric
 NO2 columns from the Ozone Monitoring Instrument (OMI) satellite
 using high resolution a priori NO2 profiles,
 surface reflectivity, and surface elevation data. This product uses
 NO2 profiles for the day retrieved, simulated by the WRF-Chem
 model at 12 km spatial resolution. The use of high spatial resolution
 NO2 profiles has been shown to better resolve urban/rural
 differences in NO2 column densities, and the use of day-to-day
 (rather than monthly average) profiles is especially important in
 applications that preferentially select observations upwind or downwind of
 a NOx source.
description: The methods for the BEHR product are described in detail in
 Laughner et al. (in prep).
description: Each month of BEHR data is stored as a .tar.gz file
 (i.e. a tar archive compressed with gzip). These can be decompressed using
 7zip or (on Mac/Linux) the command "tar -xzvf
 &lt;filename&gt;", e.g. "tar -xzvf
 OMI_BEHR-DAILY_US_v3-0A_200501.tar.gz" will expand
 OMI_BEHR-DAILY_US_v3-0A_200501.tar.gz  In addition to
 downloading the full dataset or manually downloading individual files, a
 Python program is available at https://github.com/CohenBerkeleyLab/BEHRDownloader that can perform bulk downloads of a subset of the files, as well as automatically uncompress the tar files. See the Readme in that repo for further usage information. For details on best practices for using the BEHR data, see the user guide PDF included in this repository.
DOI: 10.5061/dryad.6c9h1k7
title: Data from: Ethylmalonic encephalopathy

description: -
description: Figure S1
 Urinary organic
 acidogram shows mild elevation of ethylmalonic acid (A, arrow). Four
 generation pedigree of family showing consanguinity (B). Conservation of
 amino acid, aspartic acid at position 165 (*) of ETHE1 in different
 species (C).
DOI: 10.5061/dryad.5dj3jg5
title: Data from: Litter addition decreases plant diversity by suppressing seeding in a semi-arid grassland, Northern China

description: Plant community diversity is conducive to maintain the regional ecosystems
 stability and ecosystem services. Seed germination is one of the main ways
 to regulate plant diversity, owing to seedling recruitment as a basis for
 plant community renewal. However, the exact mechanism of how plant litter
 affects seedling recruitment and species richness is not yet fully
 understood. Therefore, a litter addition and removal experiment were
 established in a semiarid grassland to study the effects of plant litter
 on seedling recruitment and species richness from April to August in 2016
 and 2017 in Northern China. The positive correlation between species
 richness and seedling recruitment indicated that a guarantee of seedling
 recruitment was the main precondition to protect species richness. Adding
 rather than removing litter significantly reduced species richness. Litter
 addition inhibited species richness by directly increasing mechanical
 damage or indirectly reducing photosynthetically active radiation and
 seedling recruitment. The results of this study are conducive to
 understand the evolutionary and regulatory mechanisms of community species
 richness and seedling recruitment in grassland ecosystems after adding or
 removing plant litter.
description: Data for Litter addition
 decreases plant diversity by suppressing seeding in a semi-arid grassland,
 Northern ChinaData.xlsx
DOI: 10.5061/dryad.f300d56
title: Data from: Total Aβ42/Aβ40 ratio in plasma predict amyloid-PET status, independent of clinical AD diagnosis

description: Background: Research has focussed upon the identification of a blood-based
 biomarker to inform clinicians on the likelihood of Alzheimer’s disease
 pathology prior to ordering the CSF and PET testing. Objective: To explore
 if the plasma total Aβ42/Aβ40 ratio is a reliable predictor of the
 amyloid-PET status we have explored the association between these two
 variables in a subset of the Australian Imaging, Biomarkers and Lifestyle
 (AIBL) study of ageing cohort. Methodology: Taking plasma samples at three
 separate time points, we assessed the total Aβ42/Aβ40 ratio in plasma
 (TP42/40) with regard to neocortical amyloid beta (Aβ) burden via PET
 SUVR, and investigated both association with Aβ-PET status and correlation
 (and agreement) with SUVR. Results: The TP42/40 plasma ratio was
 associated with PET status at all time points (p&lt;0.013).
 Correlations with SUVR were similar across each time point, with
 Spearman’s Rho reaching -0.64 (p&lt;0.0001). Area under the curve
 (AUC) values were highly reproducible over time points, with values
 ranging from 0.880 at 36 months to 0.913 at 54 months. Assessing the
 healthy control (HC) group only, the same relationships were found.
 Conclusions: The current study demonstrates reproducibility of the plasma
 assay to discriminate between amyloid-PET positive and negative over three
 time points, which can help to substantially reducing the screening rate
 of failure (SRF) for clinical trials targeting pre-clinical or prodromal
 disease. Classification of evidence: This study provides Class II evidence
 that plasma total AB42/AB40 ratio is associated with neocortical amyloid
 burden as measured by PET SUVR.
description: SUPPLEMENTARY TABLES
 e-1, e-2,e-3 and Fig e-1 2019 07 04supplementary tables and
 Figure
DOI: 10.6078/d1rq3g
title: Berkeley High Resolution (BEHR) OMI NO2 - Gridded pixels, monthly profiles

description: The BEHR OMI NO2 product reprocesses tropospheric
 NO2 columns from the Ozone Monitoring Instrument (OMI) satellite
 using high resolution a priori NO2 profiles,
 surface reflectivity, and surface elevation data. This product uses
 NO2 profiles for the day retrieved, simulated by the WRF-Chem
 model at 12 km spatial resolution. The use of high spatial resolution
 NO2 profiles has been shown to better resolve urban/rural
 differences in NO2 column densities, and the use of day-to-day
 (rather than monthly average) profiles is especially important in
 applications that preferentially select observations upwind or downwind of
 a NOx source. However, given the computation cost of simulating
 daily, 12 km NO2 profiles over the continental US domain and accurately
 representing individual lightning events, we still provide a product using
 monthly average profiles.
description: The methods for the BEHR product are described in detail in
 Laughner et al. (in prep). 
description: Each month of BEHR data is stored as a .tar.gz file
 (i.e. a tar archive compressed with gzip). These can be decompressed using
 7zip or (on Mac/Linux) the command "tar -xzvf
 &lt;filename&gt;", e.g. "tar -xzvf
 OMI_BEHR-DAILY_US_v3-0A_200501.tar.gz" will expand
 OMI_BEHR-DAILY_US_v3-0A_200501.tar.gz  In addition to
 downloading the full dataset or manually downloading individual files, a
 Python program is available at https://github.com/CohenBerkeleyLab/BEHRDownloader that can perform bulk downloads of a subset of the files, as well as automatically uncompress the tar files. See the Readme in that repo for further usage information. For details on best practices for using the BEHR data, see the user guide PDF included in this repository.
DOI: 10.5061/dryad.h7k7551
title: Data from: Great tits encode contextual information in their food and mobbing calls

description: The calling behavior of Paridae species (titmice, tits and chickadees) in
 a predator related context is well-studied. Parid species are known to
 alter call types, note composition or call duration according to predation
 risk. However, how these species encode information about a
 non-threatening context, such as food sources, has been subject to only
 few studies. Studies in Carolina chickadees (Poecile carolinensis) have
 shown that this species alters the ratio of C and D notes to encode
 information about the presence of food and/or the flight behavior of the
 signaler. This suggests that parids also use graded signals to encode
 information about non-predatory contexts. No study to date has directly
 compared the calls of a feeding context with those of a predation (i.e.
 mobbing) context. Hence, the aim of our study was to compare the calling
 behavior of these two situations in great tits (Parus major). We recorded
 and analyzed calls uttered at a feeder and compared them to calls uttered
 in front of taxidermy mounts of sparrowhawks (Accipiter nisus). In the
 food context, great tits reduced the number of D notes and increased the
 number of B, C and E notes compared to the mobbing context. Furthermore,
 tits produced calls with longer D notes and shorter intervals between D
 notes than in the mobbing context. This indicates that great tits use two
 mechanisms of graded signals (i.e. note type and acoustic structure of D
 calls) to inform conspecifics about the nature of a situation.
description: Acoustic features D
 callsRecordings have been
 made in the field in the non- breeding season of great tits. The data file
 contains the measures of acoustic variables of D calls in two different
 contexts, i.e. mobbing and food.Call
 frequenciesRecordings have been
 made in the field in the non- breeding season of great tits. The data file
 contains the frequencyies of uttered note types in two different contexts,
 i.e. mobbing and food.Call frequency
 submission.xlsxcall
 rateRecordings have been
 made in the field in the non- breeding season of great tits. The data file
 contains the number of uttered calls in three minutes as well as the call
 rate, i.e. calls/individual/minute in two different contexts, i.e. mobbing
 and food.
DOI: 10.21223/p3/cd01ki
title: Dataset for: High density genotyping of cultivated ullucus genebank accessions using SNP markers from DArTseq

description: Molecular markers dataset of 300 cultivated ullucus accessions from CIP that were genotyped with the HighDensity platform of DArTSeq markers - SNP markers
DOI: 10.6078/d1n086
title: Berkeley High Resolution (BEHR) OMI NO2 - Native pixels, monthly profiles

description: The BEHR OMI NO2 product reprocesses tropospheric
 NO2 columns from the Ozone Monitoring Instrument (OMI) satellite
 using high resolution a priori NO2 profiles,
 surface reflectivity, and surface elevation data. This product uses
 NO2 profiles for the day retrieved, simulated by the WRF-Chem
 model at 12 km spatial resolution. The use of high spatial resolution
 NO2 profiles has been shown to better resolve urban/rural
 differences in NO2 column densities, and the use of day-to-day
 (rather than monthly average) profiles is especially important in
 applications that preferentially select observations upwind or downwind of
 a NOx source. Given the computational cost of simulating daily 12
 km resolution profiles over the continental US and the challenge of
 simulating individual lightning events accuractly, we still provide a
 product using monthly average NO2 profiles.
description: The methods for the BEHR product are described in detail in
 Laughner et al. (in prep).
description: Each month of BEHR data is stored as a .tar.gz file
 (i.e. a tar archive compressed with gzip). These can be decompressed using
 7zip or (on Mac/Linux) the command "tar -xzvf
 &lt;filename&gt;", e.g. "tar -xzvf
 OMI_BEHR-MONTHLY_US_v3-0A_200501.tar.gz" will expand
 OMI_BEHR-MONTHLY_US_v3-0A_200501.tar.gz  In addition to
 downloading the full dataset or manually downloading individual files, a
 Python program is available at https://github.com/CohenBerkeleyLab/BEHRDownloader that can perform bulk downloads of a subset of the files, as well as automatically uncompress the tar files. See the Readme in that repo for further usage information. For details on best practices for using the BEHR data, see the user guide PDF included in this repository.
DOI: 10.5061/dryad.984qb84
title: Data from: Heritability and correlations among learning and inhibitory control traits

description: To understand the evolution of cognitive abilities, we need to understand
 both how selection acts upon them and their genetic (co)variance
 structure. Recent work suggests that there are fitness consequences for
 free-living individuals with particular cognitive abilities. However, our
 current understanding of the heritability of these abilities is restricted
 to domesticated species subjected to artificial selection. We investigated
 genetic variance for, and genetic correlations among four cognitive
 abilities: inhibitory control, visual and spatial discrimination, and
 spatial ability, measured on &gt;450 pheasants, Phasianus colchicus,
 over 4 generations. Pheasants were reared in captivity but bred from
 adults that lived in the wild and hence, were subject to selection on
 survival. Pheasant chicks are precocial and were reared without parents,
 enabling us to standardise environmental and parental care effects. We
 constructed a pedigree based on 15 microsatellite loci and implemented
 animal models to estimate heritability. We found moderate heritabilities
 for discrimination learning and inhibitory control (h2=0.17-0.23) but
 heritability for spatial ability was low (h2=0.09). Genetic correlations
 among-traits were largely positive but characterised by high uncertainty
 and were not statistically significant. Principle component analysis of
 the genetic correlation matrix estimate revealed a leading component that
 explained 69% of the variation, broadly in line with expectations under a
 general intelligence model of cognition. However, this pattern was not
 apparent in the phenotypic correlation structure which was more consistent
 with a modular view of animal cognition. Our findings highlight that the
 expression of cognitive traits is influenced by environmental factors
 which masks the underlying genetic structure.
description: Pheasant cognition and
 pedigree data Pheasant cognitive
 performances.csv Pheasant
 pedigree.csv R code for Animal
 models R code for analysis in
 MS
DOI: 10.7280/d13088
title: Model Setup of Thwaites Glacier

description: We set up our Thwaites model to study its evolution in the next 100 years.
 We use BEDMAP-2 data for ice surface elevation and ice shelf draft
 elevation (Fretwell et al., 2013). We apply the bed elevation from mass
 conservation on grounded ice (Morlighem et al., 2011, 2013) and the sea
 floor bathymetry from a gravity inversion beneath floating ice (Millan et
 al., 2017). We use the surface mass balance data from RACMO 2.3 (Lenaerts
 and van den Broeke, 2012). We conduct inversion for the basal friction
 coefficient and ice shelf rheology to match modeled velocity with observed
 surface velocity. The modeling study is done with the Ice Sheet System
 Model that can be found and downloaded
 at https://issm.jpl.nasa.gov/  Retreat of Thwaites
 Glacier, West Antarctica, over the next 100 years using various ice flow
 models, ice shelf melt scenarios and basal friction laws, The Cryosphere
 Discussion (submitted)
DOI: 10.6078/d1m08w
title: 2D attenuation model of Long Valley (CA)

description: We image seismic intrinsic (Qi-1) and scattering (Qs-1) attenuation in
 Long Valley caldera, California, by analyzing more than 1700
 vertical-component waveforms from local earthquakes. Observed energy
 envelopes are fit to the diffusion model (data files) and seismic
 attenuation images (anomalies files) are produced using two-dimensional
 space-weighting functions.
DOI: 10.6078/d19m21
title: Data from: Origins of East Asian Summer Monsoon Seasonality

description: Climatological model output used in Chiang et al.
 (2019), "Origins of East Asian Summer Monsoon
 Seasonality".
description: There are two sets of data, corresponding to the
 'Realistic' and 'Idealized' runs as listed in Table 1
 of Chiang et al. (2019).   All data are in tar files,
 sorted by variable.  Individual data files are in NetCDF format.
   <strong>The 'Realistic' set
 </strong>are daily climatologies averaged over years 6-55 of the
 simulations, and with the following variables: 2D:
 Total precipitation (prect.tar), convective precipitation (precc.tar), and
 large-scale precipitation (precl.tar) 3D: Pressure
 vertical velocity (omega.tar), Specifc humidity (Q.tar), Zonal wind
 (U.tar), and Meridional wind (V.tar) All variables
 contain data for the 'Full Plateau' and 'No Plateau'
 configurations.  In addition, there is data for the 'Thin
 Plateau' for V, and for the 25%, 50% and 75% Plateau for precc, precl
 and prect.   The<strong>
 'Idealized' set </strong>are pentad climatologies averaged
 over years 6-35 of the simulations, and with the following
 variables: 2D: Total precipitation
 (aqua_prect.tar) 3D: Specifc humidity (aqua_Q.tar), Air
 temperature (aqua_T.tar), Geopotential height (aqua_Z3.tar), Zonal wind
 (aqua_U.tar), and Meridional wind (aqua_V.tar) All
 variables contain data for the land only, land+Plateau, and Plateau only
 configurations.   Finally, the
 <strong>topographic boundary conditions</strong> used for the
 set of Realistic simulations are also given in topo
DOI: 10.15146/r3fq16
title: THE DEVELOPMENT OF RUSSIAN CHURCH ARCHITECTURE IN THE 1990s-2017: THE STATE AND PROSPECTS

description:       The article examines church architecture
 in modern Russia. The historical processes of the development of church
 architecture are analyzed and systematized not only from the point of view
 of formal stylistic but also global significance. For this purpose, for
 the first time, a wide range of sources containing information on the
 sacred component of church art and on the monuments of temple architecture
 was studied. At the same time, many fragments of sources were first
 translated into English. The article uses historical and retrospective
 research methods that allowed to study the theoretical legacy of the
 modern period in the history of Russia and at the same time to generalize
 the place of Russian church architecture in the general context of
 European architectural development.  
description:     Formation of the
 methodological basis of the data set is conditioned by the goal-setting
 attitude and is determined by the integrative nature of the culturological
 field of knowledge. The methods of comparative-historical,
 historical-typological, structural-systemic and semiotic methods are
 applied in the work. Comparative and
 historical-typological procedures in the analysis of facts on a long
 stretch of historical time made it possible to reveal patterns in the
 relationship between the state, government, society and the church as a
 spiritual institution, as well as those general trends that determine
 their specifics. It is important for us to move on to the characteristics of
 the religious picture of the world and the place in it of a person, the
 system of values and ritual practice with regard to the non-Orthodox
 church (culture) and new faiths. The methods of the
 structural-system method allowed us to consider the structure of the
 church as a relatively stable set of relations of elements.
DOI: 10.17916/p6159w
title: Fitting Dynamic Regression Models to Seshat Data - Supplemental Material

description: This article presents a general statistical approach suitable for the
 analysis of time-resolved (time-series) cross-cultural data. The goal is
 to test theories about the evolutionary processes that generate cultural
 change. This approach allows us to investigate the effects of predictor
 variables (proxying for theory-suggested mechanisms), while controlling
 for spatial diffusion and autocorrelations due to shared cultural history
 (known as Galton’s Problem). It also fits autoregressive terms to account
 for serial correlations in the data and tests for nonlinear effects. I
 illustrate these ideas and methods with an analysis of processes that may
 influence the evolution of one component of social complexity, information
 systems, using the Seshat: Global History Databank.