cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.s1d37/5
title: Maximum clade credibility (MCC) trees

description: Compressed file comprising of BEAST output MCC trees.
DOI: 10.5061/dryad.s1d37/6
title: Summary of genotypes

description: Tab-delimited text file detailing inferred genotypes for influenza B viruses, representing over 10,000 strains including 2,651 complete genomes.
DOI: 10.5061/dryad.s1d37/7
title: MCC trees annotated with trunk substitutions

description: Compressed file containing MCC trees for B/Yamagata HA, B/Victoria HA, B/Yamagata PB1, and B/Victoria NA annotated with inferred mutations along the trunk lineages.
DOI: 10.5061/dryad.s1d37/8
title: Input files for antigenic analysis

description: Compressed file comprising of: tab-delimited HI data file, BEAST XML file for generation of set of empirical trees and XML file for running BMDS models for B/Yamagata and B/Victoria.
DOI: 10.5061/dryad.s1d37/9
title: Output files from antigenic analysis

description: Compressed file containing MCC trees from BMDS analysis (source data for Figure 4) and tab-delimited file summaries of mean antigenic distance from phylogenetic root inferred across 2,000 posterior trees to calculate mean antigenic drift rates (source data for Table 2). Posterior trees files were too large (&gt;50 MB in compressed form each) to be included.
DOI: 10.5061/dryad.s2d3c/1
title: Pseudobolodon_ear_region_Istack

description: CT-image stack of the vestibule of Pseudobolodon oreas (specimen Gui Mam 77). For settings and resolution of the scan please see README.pdf file.
DOI: 10.5061/dryad.t081d/1
title: Black bear foraging tactics data

description: Data from black bear foraging tactics paper.
DOI: 10.17632/dntjb92wwj.1
title: Data for: Novel Designs for Digital Gates based on Single Electron Devices to Overcome the Traditional Limitation on Speed and Bit Error Rate

description: A Short MATLAB program written in this project to calculate transition times for one of the introduced gates
DOI: 10.17632/srj2mb7k6w.1
title: Data for: Infection of Neuroblastoma Cells by Rabies Virus Is Modulated by Virus Titer

description: This is the data for this publication.
DOI: 10.5061/dryad.3571q4t/3
title: example maximum likelihood

description: Example R script used to run the maximum likelihood analysis in this manuscript.
DOI: 10.5061/dryad.3877q7d/1
title: Male fitness and phenotype data

description: Fitness and phenotype data for all males included in our experimental populations
DOI: 10.5061/dryad.3877q7d/2
title: Male and female Bateman gradients

description: Complete data on the number of offspring and number of mates for males and females in our experimental populations
DOI: 10.5061/dryad.3877q7d/3
title: Onthophagus taurus P2 data

description: Distribution of P2 values for O. taurus males using the irradiated male technique
DOI: 10.5061/dryad.3877q7d/4
title: Variance partitioning estimates

description: PopTools simulation for calculating the 95% confidence intervals for the variance partitioning estimates of each fitness component
DOI: 10.5061/dryad.3877q7d/5
title: Estimating spurious correlation

description: PopTools simulation for estimating the spurious correlation between mating success and fertilization success
DOI: 10.5061/dryad.48r5h/10
title: Sea snake diet data

description: Comprehensive summary of dietary data for 42 species of sea snakes
DOI: 10.5061/dryad.48r5h/2
title: morphological trait data

description: Body shape and body size data for all 47 species
DOI: 10.5061/dryad.48r5h/3
title: diet type

description: Dietary data; proportion of burrowing prey for 48 species
DOI: 10.5061/dryad.48r5h/4
title: 500 trees

description: Nexus file containing 500 sample trees of 49 species
DOI: 10.5061/dryad.48r5h/5
title: MCC tree

description: Nexus file containing maximum credibility tree for 49 species
DOI: 10.5061/dryad.48r5h/6
title: Analysis R script

description: R script for the analyses performed in the paper.
DOI: 10.5061/dryad.48r5h/7
title: 47 Species phylogeny x500

description: Nexus file containing 500 sample trees of 47 species
DOI: 10.5061/dryad.48r5h/8
title: 47 Species phylogeny maximum clade credibility

description: .tre file containing maximum credibility tree for 47 species
DOI: 10.5061/dryad.48r5h/9
title: Trait data

description: Morphological and dietary data for 47 species
DOI: 10.5061/dryad.4h00t/10
title: EGFRt1

description: All lsm files (images taken with a Zeiss 710) of Egfr[t1] embryos used in the analysis (quantitative or qualitative) in this paper. These embryos are homozygous for the hypomorphic allele Egfr[t1].
DOI: 10.5061/dryad.4h00t/11
title: Egfrt1;dlRC/+

description: All lsm files (images taken with a Zeiss 710) of Egfr[t1];dl[RC]/+ embryos used in the analysis (quantitative or qualitative) in this paper. These embryos are homozygous for the hypomorphic allele Egfr[t1] and transgenically carry an extra copy of dl (so three copies of full length dl: two endogenous, one transgenic).
DOI: 10.5061/dryad.4h00t/12
title: Egfrt1;dlRC

description: All lsm files (images taken with a Zeiss 710) of Egfr[t1];dl[RC] embryos used in the analysis (quantitative or qualitative) in this paper. These embryos are homozygous for the hypomorphic allele Egfr[t1] and transgenically carry two extra copies of dl (so four copies of full length dl: two endogenous, two transgenic).
DOI: 10.5061/dryad.4h00t/13
title: bcd-Toll10b-bcd3'UTR

description: All lsm files (images taken with a Zeiss 710) of bcd-Toll10b-bcd3'UTR embryos used in the analysis (quantitative or qualitative) in this paper. These embryos transgenically a Toll10b-bcd 3' UTR construct, driven by the bcd promoter.
DOI: 10.5061/dryad.4h00t/14
title: gd[7];bcd-Toll10b-bcd3'UTR

description: All lsm files (images taken with a Zeiss 710) of gd[7];bcd-Toll10b-bcd3'UTR embryos used in the analysis (quantitative or qualitative) in this paper. These embryos transgenically a Toll10b-bcd 3' UTR construct, driven by the bcd promoter, in a gd[7] background.
DOI: 10.5061/dryad.4h00t/15
title: gd[7];hsp83-Toll10b-bcd3'UTR

description: All lsm files (images taken with a Zeiss 710) of gd[7];hsp83-Toll10b-bcd3'UTR embryos used in the analysis (quantitative or qualitative) in this paper. These embryos transgenically a Toll10b-bcd 3' UTR construct, driven by the hsp83 promoter, in a gd[7] background.
DOI: 10.5061/dryad.4h00t/16
title: dl,dl-mGFP,H2A-RFP/+ for bleaching

description: All lsm files (images taken with a Zeiss 710) of dl,dl-mGFP,H2A-RFP/+ embryos used in the analysis (quantitative or qualitative) in this paper. For photobleaching.
DOI: 10.5061/dryad.4h00t/9
title: Egfr[t1]/+

description: All lsm files (images taken with a Zeiss 710) of Egfr[t1]/+ embryos used in the analysis (quantitative or qualitative) in this paper. These embryos are heterozygous for the hypomorphic allele Egfr[t1].
DOI: 10.5061/dryad.51d4r/1
title: Macrotermes natalensis manual gene annotations

description: Manual gene annotation in gff3 format for the termite Macrotermes natalensis. Part of the manuscript "Hemimetabolous genomes reveal molecular basis of termite eusociality."
DOI: 10.5061/dryad.51d4r/2
title: Zootermopsis nevadensis manual gene annotations

description: Manual gene annotation in gff3 format for the termite Zootermopsis nevadensis. Part of the manuscript "Hemimetabolous genomes reveal molecular basis of termite eusociality."
DOI: 10.5061/dryad.56v1c/1
title: Round Goby Microsatellite Data

description: Microsatellite data for Round Goby in the eastern Great Lakes. Nine markers: (Nme10, Nme4, Nme9, Nme7, Nme5, Nme2, Nme3, Nme1, Nme6) and 32 population (location) samples. Locations sampled are identified with geographical coordinates in the associated manuscript.
DOI: 10.5061/dryad.56v1c/2
title: Population Pairwise Distances

description: Shortest distances over water between all pairs of populations, in matrix format.
DOI: 10.5061/dryad.57tj1/2
title: callparams_n_responserates

description: page 1: Data for frog calls used to determine altitude dependence of artificial calls used in behavioural experiments (figure 1 in manuscript). page 2: behavioural response data for male frogs from three altitudes (figure 2 in manuscript)
DOI: 10.5061/dryad.5pf64/1
title: Supplemental Data Set 1

description: Differentially expressed genes between wild type and gif1-1 mutant.
DOI: 10.5061/dryad.5pf64/2
title: Supplemental Data Set 2

description: Putative GIF1 target genes (GIF1 high-confidence peak within 10kb).
DOI: 10.5061/dryad.5v4h8/1
title: JP_Huang_Dryad

description: SNP and sequence data for species tree reconstruction, population structure analyses, and species delimitation
DOI: 10.5061/dryad.6q8d6/1
title: Alignment_Nuclear_Loci

description: The alignments of the four nuclear loci.
DOI: 10.5061/dryad.739bs/1
title: SUPPLEMENTARY APPENDIX 1

description: Original data files generated by simulation.
DOI: 10.5061/dryad.739bs/2
title: SUPPLEMENTARY APPENDIX 2

description: Detailed methods and results of variations of Scenario II.
DOI: 10.5061/dryad.739bs/3
title: SUPPLEMENTARY APPENDIX 3

description: Chronograms of the five species in Scenario IV, with speciation rate r as (a) 10e-5, (b) 10e-6, (c) 10e-7, and (d) 10e-8 speciation events per year. The timescale for each tree is indicated by the scale axis in time units of one million years before the present.
DOI: 10.5061/dryad.739bs/4
title: SUPPLEMENTARY APPENDIX 4

description: Data files from the case study of bears.
DOI: 10.5061/dryad.7m70n/2
title: KSHAP MRI data

description: MRI images were acquired using a 3-Tesla MAGNETOM Trio 32 channel coil. Whole-brain T1-weighted images were reconstructed from 224 sagittal slices of 1 mm thickness using an MPRAGE sequence with the following parameters: TR = 2.3 s, TE = 2.3 ms, FOV = 256 × 256 mm2, and FA = 9°. The time between social network measurement and MRI acquisition was 16–21 months. Image preprocessing was carried out using tools implemented in Statistical Parametric Mapping software (SPM12; Wellcome Department of Imaging Neuroscience, London, UK) and executed in Matlab (MathWorks, Natick, Massachusetts). We used the New Segmentation algorithm implemented in SPM12 [43]. T1 images were bias-corrected and segmented into five tissue classes based on non-linearly registered tissue probability maps. The East Asian International Consortium for Brain Mapping template was used for local optimization affine regularization. In order to spatially normalize gray matter images into a standard space with enhanced accuracy of inter-subject registration [44,45], we used Diffeomorphic Anatomical Registration Exponentiated Lie algebra (DARTEL). A customized template was created from imported versions of the gray matter tissue images. Then, the deformation field was applied to previously segmented gray matter images to implement non-linear transformation into standardized Montreal Neurological Institute (MNI) space. During these non-linear transformations, the total volume of gray matter was preserved with modulated images. All images were smoothed using an 8-mm full-width at half-maximum Gaussian kernel.
DOI: 10.5061/dryad.7m70n/3
title: kshap0108

description: Demographic, subject screening data in 3rd wave Korean Social Health Aging Project (KSHAP)
DOI: 10.5061/dryad.9b3r0/1
title: Static RFID data

description: Visits to static RFID feeders used to generate social networks
DOI: 10.5061/dryad.9b3r0/2
title: GBI data

description: Group by individual matrices for each site
DOI: 10.5061/dryad.9b3r0/3
title: Individual measures

description: Individual measures of dominance and latency to explore
DOI: 10.5061/dryad.c50n5/1
title: WhatMattersIndex

description: Excel spreadsheets that describe the performance of the What Matters Index and a Proprietary Predictive Model in Medicaid/Chronic Condition, Private Practice, and Medicaid/No Chronic Condition populations
DOI: 10.5061/dryad.cc780/1
title: Data from Velthuis et al., 2017 Frontiers in Plant Science

description: Human activity is currently changing our environment rapidly, with predicted temperature increases of 1–5°C over the coming century and increased nitrogen and phosphorus inputs in aquatic ecosystems. In the shallow parts of these ecosystems, submerged aquatic plants enhance water clarity by resource competition with phytoplankton, provide habitat, and serve as a food source for other organisms. The carbon:nutrient stoichiometry of submerged aquatic plants can be affected by changes in both temperature and nutrient availability. We hypothesized that elevated temperature leads to higher carbon:nutrient ratios through enhanced nutrient-use efficiency, while nutrient addition leads to lower carbon:nutrient ratios by the luxurious uptake of nutrients. We addressed these hypotheses with an experimental and a meta-analytical approach. We performed a full-factorial microcosm experiment with the freshwater plant Elodea nuttallii grown at 10, 15, 20, and 25°C on sediment consisting of pond soil/sand mixtures with 100, 50, 25, and 12.5% pond soil. To address the effect of climatic warming and nutrient addition on the carbon:nutrient stoichiometry of submerged freshwater and marine plants we performed a meta-analysis on experimental studies that elevated temperature and/or added nutrients (nitrogen and phosphorus). In the microcosm experiment, C:N ratios of Elodea nuttallii decreased with increasing temperature, and this effect was most pronounced at intermediate nutrient availability. Furthermore, higher nutrient availability led to decreased aboveground C:P ratios. In the meta-analysis, nutrient addition led to a 25, 22, and 16% reduction in aboveground C:N and C:P ratios and belowground C:N ratios, accompanied with increased N content. No consistent effect of elevated temperature on plant stoichiometry could be observed, as very few studies were found on this topic and contrasting results were reported. We conclude that while nutrient addition consistently leads to decreased carbon:nutrient ratios, elevated temperature does not change submerged aquatic plant carbon:nutrient stoichiometry in a consistent manner. This effect is rather dependent on nutrient availability and may be species-specific. As changes in the carbon:nutrient stoichiometry of submerged aquatic plants can impact the transfer of energy to higher trophic levels, these results suggest that eutrophication may enhance plant consumption and decomposition, which could in turn have consequences for carbon sequestration.
DOI: 10.5061/dryad.fd407/1
title: Vellnow et al. 2017 - Data

description: Reproductive morphology and offspring data
DOI: 10.5061/dryad.fh8b8/1
title: 20171212 Raw data of Chinese Yew Manuscript

description: This file includes raw data concerning Chinese yews' structural diversity and regenerating plots of the manuscript entitled "Structural diversity of naturally regenerating Chinese yew (Taxus wallichiana var. mairei) populations in an ex situ conservation".
DOI: 10.5061/dryad.g10f7/1
title: Crop diversity effects on biological pest control

description: Data was collected in a field study. The file contains all data used in the analyses of this paper. Metadata provided within file.
DOI: 10.5061/dryad.h1123/1
title: Stable isotope abundance and nitrogen concentration data of adult orchids, orchid seedlings and autotrophic references.

description: Single and mean δ15N, δ13C, δ2H values, enrichment factors ε15N, ε13C, ε2H and total nitrogen concentration data of adult green leaves of 7 Orchidaceae species, fully mycoheterotrophic protocorms of 5 Orchidaceae species and 15 autotrophic reference plant species (n = 105).
DOI: 10.5061/dryad.m1n44/4
title: Appendix 4. Character-taxon matrix used in the phylogenetic analysis of Toxodontidae.

description: Nexus file with the annotated character-taxon matrix used in the phylogenetic analysis of Toxodontidae. It includes the commands for the analysis in PAUP under equal weights
DOI: 10.5061/dryad.m1n44/5
title: Appendix 4. Character-taxon matrix used in the phylogenetic analysis of Toxodontidae

description: Nexus file with the annotated character-taxon matrix used in the phylogenetic analysis of Toxodontidae. It includes the commands for the analysis in PAUP using implied weighting
DOI: 10.5061/dryad.m5ct8/1
title: Nepenthes gracilis prey/symbiont capture data

description: Data for Nepenthes gracilis pitchers sampled in Singapore in summer 2014, associated with Methods section 1.b "Assessment of insect accumulation rates in different pitcher variants", including metadata on the pitchers as well as the counts of arthropods from the initially emptied fluid and the fluid collected one month later (this collection date designated by a '2' in the name of the variable in the column header).
DOI: 10.5061/dryad.m5ct8/2
title: Canopy data

description: Data associated with assessment of relationship between pitcher color and canopy coverage, from January 2014 survey of Nepenthes gracilis in Kent Ridge Park, Singapore.
DOI: 10.5061/dryad.m5ct8/3
title: Herbivory data

description: Data associated with assessment of relationship between pitcher color and herbivory, from January 2016 survey of Nepenthes gracilis in Kent Ridge Park, Singapore.
DOI: 10.5061/dryad.n802d/1
title: Energetic fitness data

description: Data on body condition, body size, age, sex, reproductive performance, diving depth, and field metabolic rate (as proxied by mean VeDBA) from 115 Adelie penguins (Pygoscelis adeliae) breeding at Cape Crozier, Ross Sea, Antarctica, 2010-2013.
DOI: 10.5061/dryad.s2d3c/2
title: Pseudobolodon_GuiMam77_stapes_incus_malleus_frags

description: 3D surface model of the middle ear ossicles of Pseudobolodon oreas created with software Avizo 8 (STL-file).
DOI: 10.5061/dryad.t41s2/1
title: De-identified SARA Uganda 2013 database with variables defined

description: SARA Uganda 2013 database with variables used in analysis for this manuscript. De-identified. Original database is property of Uganda Ministry of Health.
DOI: 10.5061/dryad.t4s0c/1
title: Microsatellite genotypes and host phenotypes

description: The worksheet “microsatellite genotypes” contains data from individual parasites (S. mansoni larvae) collected in Senegal, genotyped with nine microsatellite loci combined in a single multiplex: L46951, smd25, smd28 and smd89 (Durand et al., 2000); CA11-1 and S9-1 (Blair et al., 2001); smd11, smd43 and sdma28 (Curtis et al., 2001). This dataset represents 1692 parasites from 63 human hosts with at least five out of the nine loci successfully amplified.
The worksheet “host phenotypes” contains host phenotypic data from the 63 human hosts. The host variables include gender, village*, liver morbidity (IP score), bladder morbidity (UBS score), Schistosoma mansoni infection intensity (epg**), Schistosoma haematobium infection intensity (ep 10ml**) and circulating anodic antigen (CAA) concentrations (picogram of CAA per mL).
village* : Pakh (code 200), Ndieumeul (code 501), Diokhor Takh (code 502)
epg**: number of eggs per gram of faeces; ep10ml**: number of eggs per 10 ml of urine.
DOI: 10.5061/dryad.tb25q.2
title: Data from: Keeping pace with the Red Queen: identifying the genetic basis of susceptibility to infectious disease
DOI: 10.5061/dryad.tb25q.2/1.2
title: CoGWAS_Supplement

description: Mathematica notebook deriving analytical models, numerical simulations, and for producing figures 1-4 and S1.
DOI: 10.5061/dryad.tb25q.2/2.2
title: CoGWAS_Supplement

description: CDF version of Mathematica notebook covering analytical model derivation, numerical simulations, and for producing figures 1-4 and S1.
DOI: 10.5061/dryad.tb25q.2/3.2
title: CoGWAS_Supplement

description: PDF version of Mathematica notebook covering analytical model derivation, numerical simulations, and for producing figures 1-4 and S1.
DOI: 10.5061/dryad.tb25q.2/4.2
title: Fig. S1 - Matching-alleles model

description: Row 1: Estimated allelic effects as a function of pathogen allele frequency (black: \beta_0, solid red: \beta_{Hi}, dashed red: \beta_{H1,H2}, blue \beta_{Pi}, blue dashed: \beta_{P1,P2}, purple dashed: \beta_{Hi,Pj}). Row 2: Variation explained by host additive effects only (solid red), host additive and epistatic effects (dashed red), host and pathogen additive and epistatic effects (dashed blue, overlaps with dashed red), and a full host pathogen model (dashed purple).
DOI: 10.5061/dryad.vc8h5/1
title: Appendix 1: Appendix S1. Specimens and measurements (in millimeters) used in regression analyses.

description: Appendix S1. Specimens and measurements (in millimeters) of Saurichthys specimens used in the regression analyses.
DOI: 10.5061/dryad.28660/1
title: Data A1

description: Microsoft Excel file which contains raw survey data for midcontinent greater white-fronted geese (Anser albifrons frontalis) migrating near Delta Junction Alaska during 2010 and 2011, organized in a single tab, “Data A1 – 2010-2011 Raw Data.” The “2010-2011 Raw Data” tab contains date, time, total adults, total juveniles, total not identified, total sample, proportion of juveniles, age ratio, percent of birds identified and location.
DOI: 10.5061/dryad.28660/10
title: Reference A9

description: U.S. Fish and Wildlife Service. 2016. Waterfowl population status, 2016. U.S. Department of Interior, Washington D.C. USA.
DOI: 10.5061/dryad.28660/2
title: Reference A1

description: Bromley RG, Rothe TC. 2003. Conservation assessment for the dusky Canada goose (Branta canadensis occidentalis Baird). U.S. Department of Agriculture Forest Service, General Technical Report PNW-GTR-591, Pacific Northwest Research Station, Portland, Oregon, USA.
DOI: 10.5061/dryad.28660/3
title: Reference A2

description: Kruse KL, compiler. 2014. Central flyway harvest and population survey data book. U.S. Fish and Wildlife Service, Lakewood CO.
DOI: 10.5061/dryad.28660/4
title: Reference A3

description: Lynch JJ, Singleton JR. 1964. Winter appraisals of annual productivity in geese and other water birds. Waterfowl Trust Annual Report 15:114-126.
DOI: 10.5061/dryad.28660/5
title: Reference A4

description: Marks D, Fischer JB. 2012. Alaska midcontinent greater white-fronted geese-Project updates, 2010-2011 Field Seasons. Unpubl. U.S. Fish and Wildlife Service report, Migratory Bird Management, Anchorage, Alaska, U.S.
DOI: 10.5061/dryad.28660/6
title: Reference A5

description: Miller HW, Dzubin A, Sweet JT. 1968. Distribution and mortality of Saskatchewan-banded white-fronted geese. Transactions of the North American Wildlife and Natural Resources Conference 33:101-119.
DOI: 10.5061/dryad.28660/7
title: Reference A6

description: Spindler MA, Lowe JM, Fujikawa JY. 1999. Trends in abundance and productivity of white-fronted geese in the taiga of northwestern and interior Alaska.  Report to the Central Flyway Technical Committee. U.S. Fish and Wildlife Service, Koyukuk/Nowitna NWR Complex, Galena, Alaska, U.S.
DOI: 10.5061/dryad.28660/8
title: Reference A7

description: Spindler MA, Hans MR. 2005. Nesting biology and local movements of female greater white-fronted geese in west-central Alaska. U.S. Fish and Wildlife Service, Galena, Alaska, U.S. 1-8.
DOI: 10.5061/dryad.415kb/1
title: Appalachian Ecological Benefits

description: Ecological benefits data measured for up to 96 parcels in Central Appalachia
DOI: 10.5061/dryad.4h00t/17
title: dl/+;dl-dGFP,H2A-RFP/+ for bleaching

description: All lsm files (images taken with a Zeiss 710) of dl/+;dl-dGFP,H2A-RFP/+ embryos used in the analysis (quantitative or qualitative) in this paper. For photobleaching.
DOI: 10.5061/dryad.4h00t/18
title: dl/+;dl-dVenus/+

description: All lsm files (images taken with a Zeiss 710) of dl/+;dl-dVenus/+ embryos used in the analysis (quantitative or qualitative) in this paper. These embryos have one copy of endogenous dl, and one copy of dl-dVenus.
DOI: 10.5061/dryad.4h00t/19
title: dl/+;dl-mVenus/+

description: All lsm files (images taken with a Zeiss 710) of dl/+;dl-mVenus/+ embryos used in the analysis (quantitative or qualitative) in this paper. These embryos have one copy of endogenous dl, and one copy of dl-mVenus.
DOI: 10.5061/dryad.4h00t/20
title: dl;dl-mVenus

description: All lsm files (images taken with a Zeiss 710) of dl;dl-mVenus embryos used in the analysis (quantitative or qualitative) in this paper. These embryos have zero copies of endogenous dl, and two copies of dl-mVenus.