cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.63p6ec
title: Occurrence Download

description: A dataset containing 103180 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RBINS Bird collection"
 ]
}

 The dataset includes 103180 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008004-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28685257
title: Microsampling techniques and patient-centric therapeutic drug monitoring of immunosuppressants

description: Immunosuppressive pharmacotherapy after solid organ transplantation (SOT) requires therapeutic drug monitoring (TDM) for therapy individualization. The venous whole blood is still considered as routine matrix for monitoring immunosuppressive drug concentration. On the other hand, as an alternative, capillary blood collected using noninvasive sampling is convergent with a patient-centric approach. Despite their disadvantages regarding sample homogeneity and the hematocrit effect, well-known dried blood spot techniques have shown promising results. Volumetric absorptive microsampling (VAMS) and quantitative dried blood spot (qDBS) have successfully eliminated these unfavorable biased elements. Microsampling can be used in transplant recipients’ care, mainly due to long-term therapy under control drug concentrations and the long distance between the place of the patient’s residence and the diagnostic laboratory in the transplant center. The study aimed to discuss the clinical consequences of implementing microsampling techniques for TDM of immunosuppressants. Additionally, we have discussed the ‘hot topics’ in microsampling: home-based self-sampling, adherence to therapy monitoring, and drug concentration conversion to estimated traditional matrices. Finally, based on our experience and current practice, we propose best practices for microsampling implementation from bench to bedside. Microsampling techniques can potentially revolutionise immunosuppressive pharmacotherapy by enabling patient-centric individualisation in various subpopulations, significantly improving post-transplant care. This review demonstrates that microsampling as the patient-centric approach benefits patients, clinicians, the healthcare system and other people i.a. caregivers involved in the therapeutic process.
DOI: 10.6084/m9.figshare.28685257.v1
title: Microsampling techniques and patient-centric therapeutic drug monitoring of immunosuppressants

description: Immunosuppressive pharmacotherapy after solid organ transplantation (SOT) requires therapeutic drug monitoring (TDM) for therapy individualization. The venous whole blood is still considered as routine matrix for monitoring immunosuppressive drug concentration. On the other hand, as an alternative, capillary blood collected using noninvasive sampling is convergent with a patient-centric approach. Despite their disadvantages regarding sample homogeneity and the hematocrit effect, well-known dried blood spot techniques have shown promising results. Volumetric absorptive microsampling (VAMS) and quantitative dried blood spot (qDBS) have successfully eliminated these unfavorable biased elements. Microsampling can be used in transplant recipients’ care, mainly due to long-term therapy under control drug concentrations and the long distance between the place of the patient’s residence and the diagnostic laboratory in the transplant center. The study aimed to discuss the clinical consequences of implementing microsampling techniques for TDM of immunosuppressants. Additionally, we have discussed the ‘hot topics’ in microsampling: home-based self-sampling, adherence to therapy monitoring, and drug concentration conversion to estimated traditional matrices. Finally, based on our experience and current practice, we propose best practices for microsampling implementation from bench to bedside. Microsampling techniques can potentially revolutionise immunosuppressive pharmacotherapy by enabling patient-centric individualisation in various subpopulations, significantly improving post-transplant care. This review demonstrates that microsampling as the patient-centric approach benefits patients, clinicians, the healthcare system and other people i.a. caregivers involved in the therapeutic process.
DOI: 10.5284/1128901
title: Digital Archive from an Archaeological Watching Brief at Ilam Hall, Ashbourne, Staffordshire, January-February 2024

description: This collection comprises images, site records, a report, spreadsheets, and a database from an archaeological watching brief at Ilam Hall, Ashbourne, Staffordshire. This work was undertaken by Ecus Ltd in January and February 2024. The archaeological deposits indicate a combination of landscaping or levelling, earlier path or track networks and include some burnt areas with slag, possibly suggesting small-scale metalworking in the vicinity.
DOI: 10.5281/zenodo.4499021
title: Islamic Traditions [IO Islamic 2659]

description: Tradition.
	
This manuscript is now IO Islamic 2659 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 127 here with further notations and hyperlinks].



127.


2659. Size 111/2 in. by 73/4 in.; foll. 479. Thirty-three lines in a page.


The final portion of a Commentary (ممزوج) on the Ṣaḥîḥ, by Shihâb al-dîn Aḥmad b. Muḥammad ḲASṬALÂNÎ (d. A. H. 923), entitled ارشاد الساری. Cf. Ḥ. Kh. ii. 535 sq. This commentary was printed at Bûlâḳ, A. H. 1285, and at Lakhnau, A. H. 1286.


It contains the last quarter, beginning with the chap. باب صلوة الاستسقآء فی المصلّی الاستسقآء.


Plainly, by inelegantly written.


Seals of a servant of ‘Âlamgîr, of H. Vansittart, and of C. Buddam, and signature of the latter, Calcutta, 1787.
DOI: 10.5281/zenodo.4499022
title: Islamic Traditions [IO Islamic 2659]

description: Tradition.
	
This manuscript is now IO Islamic 2659 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 127 here with further notations and hyperlinks].



127.


2659. Size 111/2 in. by 73/4 in.; foll. 479. Thirty-three lines in a page.


The final portion of a Commentary (ممزوج) on the Ṣaḥîḥ, by Shihâb al-dîn Aḥmad b. Muḥammad ḲASṬALÂNÎ (d. A. H. 923), entitled ارشاد الساری. Cf. Ḥ. Kh. ii. 535 sq. This commentary was printed at Bûlâḳ, A. H. 1285, and at Lakhnau, A. H. 1286.


It contains the last quarter, beginning with the chap. باب صلوة الاستسقآء فی المصلّی الاستسقآء.


Plainly, by inelegantly written.


Seals of a servant of ‘Âlamgîr, of H. Vansittart, and of C. Buddam, and signature of the latter, Calcutta, 1787.
DOI: 10.5281/zenodo.15112816
title: Prediction of liquid-liquid phase separation and liquid-solid phase transition propensities of the Tau protein and its mutants

description: This repository contains data and analysis related to the liquid-liquid phase separation (LLPS) and liquid-solid phase transition (LSPT) propensities of the human Tau protein (FL isoform, 1-441, UniProt ID: P10636-8) and its truncated mutants. The data was generated using computational tools to assess phase separation and aggregation tendencies under different conditions.
DOI: 10.5281/zenodo.15112817
title: Prediction of liquid-liquid phase separation and liquid-solid phase transition propensities of the Tau protein and its mutants

description: This repository contains data and analysis related to the liquid-liquid phase separation (LLPS) and liquid-solid phase transition (LSPT) propensities of the human Tau protein (FL isoform, 1-441, UniProt ID: P10636-8) and its truncated mutants. The data was generated using computational tools to assess phase separation and aggregation tendencies under different conditions.
DOI: 10.5281/zenodo.15112926
title: Data from: Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus

description: This dataset contains the sequences of Paranthropus robustus, first described in 'Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus', as well as the reference data and all the results from the analysis of those sequences.

Folders and Sub-Folders:

- Paranthropus_Raw_AA_Sequences_Unaligned: Contains 2 fasta files. Paranthropus_Unaligned.fasta contains all the Paranthropus robustus sequences that were used for all of the analyses. Paranthropus_Unaligned_UNFILTERED.fasta contains all the Paranthropus robusts sequences before filtering for SAP quality/confidence. These sequences were not used in any of the analyses, but are provided here for openness. 

 

 

- Reference_Datasets: Contains 3 fasta files. Each fasta file is a reference dataset used in at least one analysis. The identity and origin of each sample is described in the supplementary document of the publication.

 

 

- Phylogenetic_Analysis_Datasets_and_Trees: Contains the following five folders

    - Paranthropus_Alignments_All_Datasets: Contains three folders. Each folder contains the aligned and I/L corrected MSAs (Multiple Sequence Alignments) of Paranthropus robustus and a reference dataset.

    - Paranthropus_Diversity_Dataset_Trees_Results: Contains all analysis done using the 'diversity' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2-STARBEAST3 folder contains the Starbeast3 analysis, including the xml, output log file, output trees and the input taxon set file.

    - Paranthropus_Representative_Dataset_Trees_Results: Contains all analysis done using the 'representative' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2 folder contains the time-calibrated BEAST2 analysis, including the xml, output log file, output trees. The folder Distance_Matrix contains the generated distance matrix and the Rscript used to generate the heatmap from it.

    - Paranthropus_Independent_Dataset_Trees_Results: Contains all nexus files and tree-figures used in the analysis of the 'independent' reference dataset. 

   - Tree_Figures: Contains three sub-folders and an additional figure. Each sub-folder contains the phylogenetic tree figures generated using one of the three reference datasets.
DOI: 10.5281/zenodo.7801258
title: Data from: Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus

description: This dataset contains the sequences of Paranthropus robustus, first described in 'Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus', as well as the reference data and all the results from the analysis of those sequences.

Folders and Sub-Folders:

- Paranthropus_Raw_AA_Sequences_Unaligned: Contains 2 fasta files. Paranthropus_Unaligned.fasta contains all the Paranthropus robustus sequences that were used for all of the analyses. Paranthropus_Unaligned_UNFILTERED.fasta contains all the Paranthropus robusts sequences before filtering for SAP quality/confidence. These sequences were not used in any of the analyses, but are provided here for openness. 

 

 

- Reference_Datasets: Contains 3 fasta files. Each fasta file is a reference dataset used in at least one analysis. The identity and origin of each sample is described in the supplementary document of the publication.

 

 

- Phylogenetic_Analysis_Datasets_and_Trees: Contains the following five folders

    - Paranthropus_Alignments_All_Datasets: Contains three folders. Each folder contains the aligned and I/L corrected MSAs (Multiple Sequence Alignments) of Paranthropus robustus and a reference dataset.

    - Paranthropus_Diversity_Dataset_Trees_Results: Contains all analysis done using the 'diversity' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2-STARBEAST3 folder contains the Starbeast3 analysis, including the xml, output log file, output trees and the input taxon set file.

    - Paranthropus_Representative_Dataset_Trees_Results: Contains all analysis done using the 'representative' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2 folder contains the time-calibrated BEAST2 analysis, including the xml, output log file, output trees. The folder Distance_Matrix contains the generated distance matrix and the Rscript used to generate the heatmap from it.

    - Paranthropus_Independent_Dataset_Trees_Results: Contains all nexus files and tree-figures used in the analysis of the 'independent' reference dataset. 

   - Tree_Figures: Contains three sub-folders and an additional figure. Each sub-folder contains the phylogenetic tree figures generated using one of the three reference datasets.
DOI: 10.5281/zenodo.15046909
title: Lab and TELEMAC 3D model data of mean flow and turbulence around a monopile

description: Data used in publication of the research. Data is saved as .csv files, code used to plot the data is MATLAB, but saved as plain text files. I have given some tips and notes on using this code and data.
DOI: 10.5281/zenodo.14219115
title: Evidence that metapopulation dynamics maintain a species' range limit

description: This zip folder includes both raw data from a multi-year (2019 and 2022) survey of coastal dune habitat and occupancy by Camissoniopsis cheiranthifolia, as well as an R project and associated scripts for an analysis of variation in metapopulation dynamics towards a species' range limit.
DOI: 10.5281/zenodo.14812478
title: Evidence that metapopulation dynamics maintain a species' range limit

description: This zip folder includes both raw data from a multi-year (2019 and 2022) survey of coastal dune habitat and occupancy by Camissoniopsis cheiranthifolia, as well as an R project and associated scripts for an analysis of variation in metapopulation dynamics towards a species' range limit.
DOI: 10.5281/zenodo.15112983
title: THE CAUCASUS  ECONOMIC & SOCIAL ANALYSIS JOURNAL OF SOUTHERN CAUCASUS

description: THE CAUCASUS ECONOMIC & SOCIAL ANALYSIS JOURNAL OF SOUTHERN CAUCASUS
DOI: 10.5281/zenodo.15112984
title: THE CAUCASUS  ECONOMIC & SOCIAL ANALYSIS JOURNAL OF SOUTHERN CAUCASUS

description: THE CAUCASUS ECONOMIC & SOCIAL ANALYSIS JOURNAL OF SOUTHERN CAUCASUS
DOI: 10.5281/zenodo.4498964
title: Islamic Traditions [IO Bijapur 94] صحيح البخاري [part]

description: Tradition.

This manuscript is now IO Bijapur 94 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 121 here with further notations and hyperlinks].


121

B 94, 95. Size 111/2 in. by 8 in.; foll. 363. Twenty-one lines in a page.

The first half of the Ṣaḥîḥ. With frequent marginal notes, taken from the commentaries. The various readings of the first editors of the work are added in the beginning portion. A list of the abbreviations used for their names is on the title-page. The first part has several defects, as may be seen from the original pagination.

Plainly written in different hands. At the end the following note:

این کتاب مبارک حضرت خان عالیشان حضرت احمد خان... بن خداوند عبدالله خان محض لله و فی الله نویسانیده اند و محض لله بخشش وهبت کرده اند برای حضر (sic) شیخ اسماعیل طالب العلم قادری فَمَنْ بَدَّلَهُ بَعْدَ مَا سَمِعَهُ فَأِنَّمَا أِثْمُهُ عَلَی اْلَّذِینَ یُبَدِّلُوْنَهُ أِنَّ اْللَهَ سَمِیعٌ عَلِیمٌ.1

Cat. p. 223, i. 3.

 

1 Sû. 2, 177.
DOI: 10.5281/zenodo.4498965
title: Islamic Traditions [IO Bijapur 94] صحيح البخاري [part]

description: Tradition.

This manuscript is now IO Bijapur 94 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 121 here with further notations and hyperlinks].


121

B 94, 95. Size 111/2 in. by 8 in.; foll. 363. Twenty-one lines in a page.

The first half of the Ṣaḥîḥ. With frequent marginal notes, taken from the commentaries. The various readings of the first editors of the work are added in the beginning portion. A list of the abbreviations used for their names is on the title-page. The first part has several defects, as may be seen from the original pagination.

Plainly written in different hands. At the end the following note:

این کتاب مبارک حضرت خان عالیشان حضرت احمد خان... بن خداوند عبدالله خان محض لله و فی الله نویسانیده اند و محض لله بخشش وهبت کرده اند برای حضر (sic) شیخ اسماعیل طالب العلم قادری فَمَنْ بَدَّلَهُ بَعْدَ مَا سَمِعَهُ فَأِنَّمَا أِثْمُهُ عَلَی اْلَّذِینَ یُبَدِّلُوْنَهُ أِنَّ اْللَهَ سَمِیعٌ عَلِیمٌ.1

Cat. p. 223, i. 3.

 

1 Sû. 2, 177.
DOI: 10.5281/zenodo.4488406
title: • Islamic Traditions [IO Bijapur 96] صحيح البخاري

description: Tradition.

This manuscript is now IO Bijapur 96 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 120 here with notations and hyperlinks].


120.

B 96. Size 12 in. by 9 in.; foll. 609. Twenty-nine lines in a page.

Another copy of the same work, plainly written, of the tenth century. Ornamented. The first pages covered with interlinear and marginal notes, the latter taken from commentaries. The last folio is wanting. The beginning is much injured.

According to the inscription, this MS. was once the property of 'Abd al-bâḳi Tabrîzî Ḥusainî [ed note: d. 1629/30]. Seal of Muḥammad 'Adil Shâh.

Bîj. Libr. A. H. 1059 [=1649 CE].

Cat. p. 223, i. 6. [ed note: = Ḥaqīm Ḥamid al-Dīn's Urdu catalogue prepared at the behest of H. B. Frere].
DOI: 10.5281/zenodo.4488407
title: • Islamic Traditions [IO Bijapur 96] صحيح البخاري

description: Tradition.

This manuscript is now IO Bijapur 96 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 120 here with notations and hyperlinks].


120.

B 96. Size 12 in. by 9 in.; foll. 609. Twenty-nine lines in a page.

Another copy of the same work, plainly written, of the tenth century. Ornamented. The first pages covered with interlinear and marginal notes, the latter taken from commentaries. The last folio is wanting. The beginning is much injured.

According to the inscription, this MS. was once the property of 'Abd al-bâḳi Tabrîzî Ḥusainî [ed note: d. 1629/30]. Seal of Muḥammad 'Adil Shâh.

Bîj. Libr. A. H. 1059 [=1649 CE].

Cat. p. 223, i. 6. [ed note: = Ḥaqīm Ḥamid al-Dīn's Urdu catalogue prepared at the behest of H. B. Frere].
DOI: 10.5281/zenodo.4487442
title: Koranic Science, a Commentary [IO Bijapur 331]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 331 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 116 here with further notations and hyperlinks].


116.

B 331. Size 81/2 in. by 6 in.; foll. 281. Seventeen lines in a page.

A fragment of a work on the ordinance of law and religion which are derived from the Koran. It belongs to the kind usually called احکام القران (see Ḥ. Kh. i. 173). As the MS. is imperfect at the beginning, the title and the name of the author cannot be ascertained. The latter lived, however, as appears from his quotations, not earlier than the tenth century. He goes over the whole Koran, selects those verses which contain ordinances of the said kind, and illustrates them at some length.

Begins:

سورة الفاتحة ام القران واصله و رئیسه تشتمل اجمالا علی جملة ما فی القران تفصیلا و کیف لا والکتاب یعرف بعنوانه و دیباجته ففیها شابتة (؟ثابتةsic, r.) من احکام الفقه و قواعد الاصول و مسائل الکلام.

After enumerating the various ordinances derived from the first Sûrah, the author proceeds to Sû. 2, and in the first place explains v. 27 as in illustration of the question, مسئلة ان الاباحة اصل فی الاشیاء.

Imperfect at the end, terminating at Sû. 16, 77.

Plainly written on European paper, in the middle of the twelfth century.

Erroneously inscribed اجتهادات شیخ اکبر محیی الدین ابن علی العربی در علم فقه. CF. Catal. 229, xxii. 2.
DOI: 10.5281/zenodo.4487443
title: Koranic Science, a Commentary [IO Bijapur 331]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 331 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 116 here with further notations and hyperlinks].


116.

B 331. Size 81/2 in. by 6 in.; foll. 281. Seventeen lines in a page.

A fragment of a work on the ordinance of law and religion which are derived from the Koran. It belongs to the kind usually called احکام القران (see Ḥ. Kh. i. 173). As the MS. is imperfect at the beginning, the title and the name of the author cannot be ascertained. The latter lived, however, as appears from his quotations, not earlier than the tenth century. He goes over the whole Koran, selects those verses which contain ordinances of the said kind, and illustrates them at some length.

Begins:

سورة الفاتحة ام القران واصله و رئیسه تشتمل اجمالا علی جملة ما فی القران تفصیلا و کیف لا والکتاب یعرف بعنوانه و دیباجته ففیها شابتة (؟ثابتةsic, r.) من احکام الفقه و قواعد الاصول و مسائل الکلام.

After enumerating the various ordinances derived from the first Sûrah, the author proceeds to Sû. 2, and in the first place explains v. 27 as in illustration of the question, مسئلة ان الاباحة اصل فی الاشیاء.

Imperfect at the end, terminating at Sû. 16, 77.

Plainly written on European paper, in the middle of the twelfth century.

Erroneously inscribed اجتهادات شیخ اکبر محیی الدین ابن علی العربی در علم فقه. CF. Catal. 229, xxii. 2.
DOI: 10.5281/zenodo.4487430
title: Koranic Science, a Commentary [IO Bijapur 314]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 314 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 115 here with further notations and hyperlinks].


115.

B 314. Size 8 in. by 41/2 in.; foll. 49. Thirteen lines in a page.

A short treatise on the abrogated verses of the Koran (الناسخ و المنسوخ), following the order of the Sûrahs, by an unknown author. The beginning is wanting; the first words are: فعلی هذا التفسیر یکون حکم القائل به ثابتا غیر منسوخ.

At the end a computation, according to which there are 150 abrogated (منسوخ) and 86 abrogating verses (ناسخ) in the Koran.

Plainly written. A defect after fol. 17.
DOI: 10.5281/zenodo.4487431
title: Koranic Science, a Commentary [IO Bijapur 314]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 314 in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 115 here with further notations and hyperlinks].


115.

B 314. Size 8 in. by 41/2 in.; foll. 49. Thirteen lines in a page.

A short treatise on the abrogated verses of the Koran (الناسخ و المنسوخ), following the order of the Sûrahs, by an unknown author. The beginning is wanting; the first words are: فعلی هذا التفسیر یکون حکم القائل به ثابتا غیر منسوخ.

At the end a computation, according to which there are 150 abrogated (منسوخ) and 86 abrogating verses (ناسخ) in the Koran.

Plainly written. A defect after fol. 17.