cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.h292w2
title: Occurrence Download

description: A dataset containing 724153 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 724153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158220-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgluag
title: Occurrence Download

description: A dataset containing 12154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liriodendron L."
 ]
}

 The dataset includes 12154 records from 297 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013095-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5jyu4
title: Occurrence Download

description: A dataset containing 1371011 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (santander)"
 ]
}

 The dataset includes 1371011 records from 607 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158248-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5t8rhz
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lentinus Fr."
 ]
}

 The dataset includes 387 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252910-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8v36sp
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea haussknechtii (Boiss.) F.K.Mey."
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063917-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj8mcp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea angustifolia F.K.Mey."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063870-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ydj8tk
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((23.02906 39.33037,23.07026 39.33037,23.07026 39.37294,23.02906 39.37294,23.02906 39.33037))",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 153 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013100-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3utr7
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.28467 53.8266,-0.46143 56.21892,-3.36182 59.7121,-9.07471 57.39762,-4.28467 53.8266))",
 "HasGeospatialIssue is false",
 "TaxonKey is Myotis mystacinus (Kuhl, 1817)"
 ]
}

 The dataset includes 142 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252914-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5xeta
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material citation",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypnea spinella (C.Agardh) Kütz."
 ]
}

 The dataset includes 28 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063865-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmnpvx
title: Occurrence Download

description: A dataset containing 7677 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Punica granatum L."
 ]
}

 The dataset includes 7677 records from 362 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013090-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7q3v2
title: Occurrence Download

description: A dataset containing 1340211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-76.98335 5.07573,-74.62429 5.07573,-74.62429 7.60236,-76.98335 7.60236,-76.98335 5.07573))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 1340211 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0280123-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxu7md
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ditassa ciliata (Moldenke) Morillo"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158366-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qknafa
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum morganii Dodson & Garay"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158367-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu7kc9
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocaulon cabralense Silveira"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158369-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4itg2
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptothamnus F.Muell."
 ]
}

 The dataset includes 167 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013108-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcynvb
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 852 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274025-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thywga
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea cepaeifolia (Wulfen) Rchb."
 ]
}

 The dataset includes 213 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063891-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rporkq
title: Occurrence Download

description: A dataset containing 10838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia seguieriana Neck."
 ]
}

 The dataset includes 10838 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013101-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19808063
title: Additional file 7 of Combined use of specific length amplified fragment sequencing (SLAF-seq) and bulked segregant analysis (BSA) for rapid identification of genes influencing fiber content of hemp (Cannabis sativa L.)

description: Additional file 7: Supplemental Table 7. Primer sequences were used for Real-Time quantitative PCR validation
DOI: 10.6084/m9.figshare.19808042
title: Additional file 1 of Combined use of specific length amplified fragment sequencing (SLAF-seq) and bulked segregant analysis (BSA) for rapid identification of genes influencing fiber content of hemp (Cannabis sativa L.)

description: Additional file 1: Supplemental Table 1. Detailed information about the fresh fiber content of F1 bulk and mixed pool
DOI: 10.6084/m9.figshare.19808063.v1
title: Additional file 7 of Combined use of specific length amplified fragment sequencing (SLAF-seq) and bulked segregant analysis (BSA) for rapid identification of genes influencing fiber content of hemp (Cannabis sativa L.)

description: Additional file 7: Supplemental Table 7. Primer sequences were used for Real-Time quantitative PCR validation
DOI: 10.6084/m9.figshare.19808054.v1
title: Additional file 4 of Combined use of specific length amplified fragment sequencing (SLAF-seq) and bulked segregant analysis (BSA) for rapid identification of genes influencing fiber content of hemp (Cannabis sativa L.)

description: Additional file 4: Supplemental Table 4. The statistical analysis of annotated genes in the associated regions
DOI: 10.6084/m9.figshare.19807919
title: Additional file 1 of BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa)

description: Additional file 1. Table S1: Phenotypic variation of parents and F2:3 lines. Table S2: Number of single nucleotide polymorphisms (SNPs) and Indels detected in the samples. Table S3: Statistics of variation in the 2.02 Mb interval of qPH9 based on resequencing data. Table S4: Primers used for the 13 KASP markers. Table S5: Further mapping information for qPH9 using the 13 KSAP markers. Table S6: Annotated genes within the 126-Kb interval. Table S7: Haplotype and plant height difference of Os09g0433600. Table S8: Haplotype and plant height difference of chr9:15916244 T. Table S9: Information on 26 germplasm resources of Hap6 haplotypes ofOs09g0433600.
DOI: 10.6084/m9.figshare.19808099
title: Additional file 2 of Regulation mechanisms of flavonoids biosynthesis of Hancheng Dahongpao peels (Zanthoxylum bungeanum Maxim) at different development stages by integrated metabolomics and transcriptomics analysis

description: Additional file 2: Table S1. The primers and UBQ gene. Table S2. Differentially accumulated flavonoid compounds in the green and yellow peels. Table S3. Differentially accumulated flavonoid compounds in the green and full red peels. Table S4. Differentially accumulated flavonoid compounds in the yellow and full red peels. Table S5. The transcriptome data of ‘Hancheng Dahongpao’ peels and the differentially expressed genes identified in G-vs-Y, Y-vs-R and G-vs-R. Table S6. Differentially expressed transcription factors identified in G-vs-R. Table S7. RT-qPCR data of 10 structure differentially expressed genes and 5 MYB transcription factors expression levels.
DOI: 10.6084/m9.figshare.19808407
title: China's Gridded Manufacturing Dataset

description: The growth of the manufacturing industry is the engine of rapid economic growth in developing regions. Characterizing the geographical distribution of manufacturing firms is critically important for scientists and policymakers. However, data on the manufacturing industry used in previous studies either have a low spatial resolution (or fuzzy classification) or high-resolution information is lacking. Here, we propose a map point-of-interest classification method based on machine learning technology and build a dataset of the distribution of Chinese manufacturing firms called the Gridded Manufacturing Dataset. This dataset includes the number and type of manufacturing firms at a 0.01° latitude by 0.01° longitude scale. It includes all manufacturing firms (classified into seven categories) in China in 2015 (4.40 million) and 2019 (6.01 million). This dataset can be used to characterize temporal and spatial patterns in the distribution of manufacturing firms as well as reveal the mechanisms underlying the development of the manufacturing industry and changes in regional economic policies.
DOI: 10.6084/m9.figshare.19808093.v1
title: Additional file 1 of Regulation mechanisms of flavonoids biosynthesis of Hancheng Dahongpao peels (Zanthoxylum bungeanum Maxim) at different development stages by integrated metabolomics and transcriptomics analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.19808099.v1
title: Additional file 2 of Regulation mechanisms of flavonoids biosynthesis of Hancheng Dahongpao peels (Zanthoxylum bungeanum Maxim) at different development stages by integrated metabolomics and transcriptomics analysis

description: Additional file 2: Table S1. The primers and UBQ gene. Table S2. Differentially accumulated flavonoid compounds in the green and yellow peels. Table S3. Differentially accumulated flavonoid compounds in the green and full red peels. Table S4. Differentially accumulated flavonoid compounds in the yellow and full red peels. Table S5. The transcriptome data of ‘Hancheng Dahongpao’ peels and the differentially expressed genes identified in G-vs-Y, Y-vs-R and G-vs-R. Table S6. Differentially expressed transcription factors identified in G-vs-R. Table S7. RT-qPCR data of 10 structure differentially expressed genes and 5 MYB transcription factors expression levels.
DOI: 10.6084/m9.figshare.19808093
title: Additional file 1 of Regulation mechanisms of flavonoids biosynthesis of Hancheng Dahongpao peels (Zanthoxylum bungeanum Maxim) at different development stages by integrated metabolomics and transcriptomics analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.24002721
title: Additional file 2 of Knockdown of long noncoding RNA SAN rejuvenates aged adipose-derived stem cells via miR-143-3p/ADD3 axis

description: Additional file 2. Differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.24002721.v2
title: Additional file 2 of Knockdown of long noncoding RNA SAN rejuvenates aged adipose-derived stem cells via miR-143-3p/ADD3 axis

description: Additional file 2. Differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.24002724
title: Additional file 3 of Knockdown of long noncoding RNA SAN rejuvenates aged adipose-derived stem cells via miR-143-3p/ADD3 axis

description: Additional file 3. Gene list in Fig. 5a.
DOI: 10.6084/m9.figshare.24002724.v2
title: Additional file 3 of Knockdown of long noncoding RNA SAN rejuvenates aged adipose-derived stem cells via miR-143-3p/ADD3 axis

description: Additional file 3. Gene list in Fig. 5a.
DOI: 10.6084/m9.figshare.19808120.v1
title: Additional file 6 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 6: Table S5. The identified region-specific modules.
DOI: 10.6084/m9.figshare.19808108.v1
title: Additional file 2 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 2: Table S2. Identification of region-specific genes (RSGs).
DOI: 10.6084/m9.figshare.19808114.v1
title: Additional file 4 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 4: Table S4. RSGs transcription factor analysis.
DOI: 10.6084/m9.figshare.19808105
title: Additional file 1 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 1:  Table S1. Reads mapping summary of chuck, neck, rump, tenderloin and longissimus lumborum.
DOI: 10.6084/m9.figshare.19808114
title: Additional file 4 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 4: Table S4. RSGs transcription factor analysis.
DOI: 10.6084/m9.figshare.19808120
title: Additional file 6 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 6: Table S5. The identified region-specific modules.
DOI: 10.6084/m9.figshare.19808108
title: Additional file 2 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 2: Table S2. Identification of region-specific genes (RSGs).
DOI: 10.6084/m9.figshare.19808111.v1
title: Additional file 3 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 3: Table S3. Functional annotation and enrichment analysis of RSGs.
DOI: 10.6084/m9.figshare.19808105.v1
title: Additional file 1 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 1:  Table S1. Reads mapping summary of chuck, neck, rump, tenderloin and longissimus lumborum.
DOI: 10.6084/m9.figshare.19808111
title: Additional file 3 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 3: Table S3. Functional annotation and enrichment analysis of RSGs.
DOI: 10.6084/m9.figshare.19807933
title: Additional file 2 of Oxidative stress facilitates infection of the unicellular alga Haematococcus pluvialis by the fungus Paraphysoderma sedebokerense

description: Additional file 2: Differentially expressed genes.
DOI: 10.6084/m9.figshare.19808126
title: Additional file 8 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 8: Table S7. RT-qPCR primer sequences for candidate genes related to meat quality traits.
DOI: 10.6084/m9.figshare.19807936
title: Additional file 3 of Oxidative stress facilitates infection of the unicellular alga Haematococcus pluvialis by the fungus Paraphysoderma sedebokerense

description: Additional file 3: Metabolomics data of SPIs harvested at various infection stage.
DOI: 10.6084/m9.figshare.19807933.v1
title: Additional file 2 of Oxidative stress facilitates infection of the unicellular alga Haematococcus pluvialis by the fungus Paraphysoderma sedebokerense

description: Additional file 2: Differentially expressed genes.
DOI: 10.6084/m9.figshare.19808123.v1
title: Additional file 7 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 7: Table S6. The summarize of candidate genes related to meat quality traits in longissimus lumborum, chuck, neck, rump and tenderloin beef cuts.
DOI: 10.6084/m9.figshare.19808126.v1
title: Additional file 8 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 8: Table S7. RT-qPCR primer sequences for candidate genes related to meat quality traits.
DOI: 10.6084/m9.figshare.19808123
title: Additional file 7 of Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

description: Additional file 7: Table S6. The summarize of candidate genes related to meat quality traits in longissimus lumborum, chuck, neck, rump and tenderloin beef cuts.
DOI: 10.6084/m9.figshare.8798126.v1
title: Exploring toxicity of perfluorinated compounds through complex network and pathway modeling

description: Perfluorinated compounds (PFCs) have serious impacts on human health, which could interfere with the body's signal pathways and affect the normal hormone balance of humans. PFCs were reported to bind to many proteins causing a series of biological effects. It was quite possible that the in vivo action of PFCs was not a single target or a single pathway, suggesting the toxic effect was due to the disturbance of protein or gene network, not limited to the modification of a single target protein or gene. Thus, a PFCs-targets interaction network was constructed and the significant differences in the characteristics of complex networks between the branched PFCs and linear PFCs were observed. A molecular dynamics simulation proved that binding ability of the branched PFCs to the target protein was much weaker than that of the linear PFCs, explaining why the branched PFCs presented significantly difference from the linear PFCs in terms of complex network characteristics. In addition, four target genes were identified as the central node genes of the network. The four target genes were proved to present certain influences on some diseases, which suggested a high correlation between PFCs to these diseases, including obesity, hepatocellular carcinoma and diabetes. The present work was helpful to develop new approaches to identify the key toxic targets of compounds and to explore the toxicity effects on pathways.
AbbreviationsARandrogen receptorBPAbisphenol AESR1estrogen receptor 1ESR2estrogen receptor 2GLTPglycolipid transfer proteinHbFthe fetal hemoglobinHBG1hemoglobin subunit γ-1hERαhuman ERαHSD17B1hydroxysteroid 17-β dehydrogenase 1KEGGKenya encyclopedia of genes and genomesMDmolecular dynamics simulationPFCsperfluorinated compoundsPFOAperfluorooctanoic acidPFOSperfluorooctane sulfonatePOPspersistent organic pollutantsRMSDroot-mean-square deviationSHBGsex hormone binding globulinSPC/Eextended simple point charge modelTRthyroid hormone receptor androgen receptor bisphenol A estrogen receptor 1 estrogen receptor 2 glycolipid transfer protein the fetal hemoglobin hemoglobin subunit γ-1 human ERα hydroxysteroid 17-β dehydrogenase 1 Kenya encyclopedia of genes and genomes molecular dynamics simulation perfluorinated compounds perfluorooctanoic acid perfluorooctane sulfonate persistent organic pollutants root-mean-square deviation sex hormone binding globulin extended simple point charge model thyroid hormone receptor Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.19807943
title: Additional file 3 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)

description: Additional file 3: Table S3. SiSPL gene promoter regioncis-acting element details.