cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9pd3hf
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cichla monoculus Agassiz, 1831"
 ]
}

 The dataset includes 460 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200065-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdjctk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex alpinus L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138531-240321170329656/datasets/export for details.
DOI: 10.15468/dl.wjr6n7
title: Occurrence Download

description: A dataset containing 1151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grus nigricollis Prjevalsky, 1876",
 "Year 2000-2024"
 ]
}

 The dataset includes 1151 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092357-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec4tje
title: Occurrence Download

description: A dataset containing 106561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-139.0",
 "Geometry POLYGON((-130 25,-108.12744 24.78516,-108.61084 35.15625,-108.91846 44.91211,-130 45,-130 25))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 106561 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116066-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8wjzv
title: Occurrence Download

description: A dataset containing 702 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Phacelia ciliata Benth.",
 "TaxonKey is Phacelia congesta (Douglas ex Lehm.) Hook."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 702 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016348-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t366s3
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dipsas peruana (Boettger, 1898)"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092355-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzq5cx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is AMNH Bird Collection",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016348-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsjhfe
title: Occurrence Download

description: A dataset containing 10763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea salicifolia L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is False",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is less than 180",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180"
 ]
}

 The dataset includes 10763 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074112-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jj1evt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schefflera brevipes Merr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016349-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy53cm
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium lusitanicum Arv.-Touv."
 ]
}

 The dataset includes 37 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024091-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2a468
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Lupinus bogotensis Benth.",
 "TaxonKey is Lupinus bogotensis var. parvior C.P.Sm."
 ]
 },
 "Year 1980-2020"
 ]
}

 The dataset includes 86 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098000-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cf49w4
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cleome pallida Ky."
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092361-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvrljc
title: Occurrence Download

description: A dataset containing 1017 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Phacelia minor (Harv.) Thell."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1017 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016349-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah5sr7
title: Occurrence Download

description: A dataset containing 2473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinidia chinensis Planch."
 ]
}

 The dataset includes 2473 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098003-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26989699.v1
title: Additional file 4 of Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere

description: Additional file 4: Table S3. MAG summary including AMR, virulence and toxins identified.
DOI: 10.6084/m9.figshare.26989702
title: Additional file 5 of Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere

description: Additional file 5: Table S4. Resistomap targeted genes and qPCR results.
DOI: 10.6084/m9.figshare.26989726
title: Additional file 3 of A systematic review of mechanistic models used to study avian influenza virus transmission and control

description: Additional file 3: Data extraction from the 46 included articles [35–80].
DOI: 10.6084/m9.figshare.26989726.v1
title: Additional file 3 of A systematic review of mechanistic models used to study avian influenza virus transmission and control

description: Additional file 3: Data extraction from the 46 included articles [35–80].
DOI: 10.6084/m9.figshare.26989741
title: Additional file 2 of Proteomic interrogation of the meninges reveals the molecular identities of structural components and regional distinctions along the CNS axis

description: Additional file 2: Table. S3. Total proteins detected in brain and spinal meninges. Proteomic analysis was performed on 6 samples each of naïve Biozzi mouse brain and spinal.
DOI: 10.6084/m9.figshare.26989741.v1
title: Additional file 2 of Proteomic interrogation of the meninges reveals the molecular identities of structural components and regional distinctions along the CNS axis

description: Additional file 2: Table. S3. Total proteins detected in brain and spinal meninges. Proteomic analysis was performed on 6 samples each of naïve Biozzi mouse brain and spinal.
DOI: 10.6084/m9.figshare.26989744.v1
title: Additional file 3 of Proteomic interrogation of the meninges reveals the molecular identities of structural components and regional distinctions along the CNS axis

description: Additional file 3: Table S4. All proteins significantly upregulated in brain and spinal cord meninges.
DOI: 10.6084/m9.figshare.26989744
title: Additional file 3 of Proteomic interrogation of the meninges reveals the molecular identities of structural components and regional distinctions along the CNS axis

description: Additional file 3: Table S4. All proteins significantly upregulated in brain and spinal cord meninges.
DOI: 10.6084/m9.figshare.26989750
title: Additional file 2 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 2: Table S1. List of compiled ages on igneous rock from southwest Japan (SWJ) and northeast Japan (NEJ).
DOI: 10.6084/m9.figshare.26989750.v1
title: Additional file 2 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 2: Table S1. List of compiled ages on igneous rock from southwest Japan (SWJ) and northeast Japan (NEJ).
DOI: 10.6084/m9.figshare.26989756
title: Additional file 4 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 4: Table S2. Summary of descriptions of 130–30 Ma adakite and High-Mg andesite.
DOI: 10.6084/m9.figshare.26989756.v1
title: Additional file 4 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 4: Table S2. Summary of descriptions of 130–30 Ma adakite and High-Mg andesite.
DOI: 10.6084/m9.figshare.26989759
title: Additional file 5 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 5: Table S3. List of Sr & Y features for Cretaceous–Paleogene igneous rock with chronological data.
DOI: 10.6084/m9.figshare.26989759.v1
title: Additional file 5 of Clockwise rotation of SW Japan and timing of Izanagi–Pacific ridge subduction revealed by arc migration

description: Additional file 5: Table S3. List of Sr & Y features for Cretaceous–Paleogene igneous rock with chronological data.
DOI: 10.6084/m9.figshare.26989768
title: Additional file 2 of Modelling TDP-43 proteinopathy in Drosophila uncovers shared and neuron-specific targets across ALS and FTD relevant circuits

description: Additional file 2: Table S1E Nucleus to whole cell TDP-43 YFP ratios summarized in Figure 1e. Table S1F Summary statistics for cell number data presented in Figure 1f. Table S2A Summary statistics for mCD8RFP intensity presented in Figure 2a. Table S2B Summary statistics for YFP particle size values presented in Figure 2b. Table S3 Summary statistics for y-maze data presented in Figure 3. Table S4A Summary statistics for night sleep presented in Figure 4a. Table S4B Summary statistics for sleep bout length presented in Figure 4b. Table S4C Summary statistics for sleep bout number presented in Figure 4c. Table S6A Wild-type TDP-43 GOterms from differential gene expression presented in Figure 6. Table S6B Mutant TDP-43 GOterms from differential gene expression presented in Figure 6. Table S7CD Y-maze summary statistics for data presented in Figures 7c and 7d. Table S8 mRNAs enriched in nuclei with TDP-43 associated cryptic exons. Table S9 Summary of phenotypes observed in wild-type and mutant fly models.
DOI: 10.6084/m9.figshare.26989768.v1
title: Additional file 2 of Modelling TDP-43 proteinopathy in Drosophila uncovers shared and neuron-specific targets across ALS and FTD relevant circuits

description: Additional file 2: Table S1E Nucleus to whole cell TDP-43 YFP ratios summarized in Figure 1e. Table S1F Summary statistics for cell number data presented in Figure 1f. Table S2A Summary statistics for mCD8RFP intensity presented in Figure 2a. Table S2B Summary statistics for YFP particle size values presented in Figure 2b. Table S3 Summary statistics for y-maze data presented in Figure 3. Table S4A Summary statistics for night sleep presented in Figure 4a. Table S4B Summary statistics for sleep bout length presented in Figure 4b. Table S4C Summary statistics for sleep bout number presented in Figure 4c. Table S6A Wild-type TDP-43 GOterms from differential gene expression presented in Figure 6. Table S6B Mutant TDP-43 GOterms from differential gene expression presented in Figure 6. Table S7CD Y-maze summary statistics for data presented in Figures 7c and 7d. Table S8 mRNAs enriched in nuclei with TDP-43 associated cryptic exons. Table S9 Summary of phenotypes observed in wild-type and mutant fly models.
DOI: 10.15468/dl.qwnh3b
title: Occurrence Download

description: A dataset containing 1670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-60.88503 -2.06,-58.50976 -2.06,-58.50976 0.65889,-60.88503 0.65889,-60.88503 -2.06))",
 "HasGeospatialIssue is false",
 "TaxonKey is Fabaceae"
 ]
}

 The dataset includes 1670 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011672-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26989777
title: Additional file 1 of Unveiling microbial diversity in deep geothermal fluids, from current knowledge and analogous environments

description: Additional file 1: Table S1. Diversity of microorganisms in analogous environments of geothermal power plants.
DOI: 10.6084/m9.figshare.26989777.v1
title: Additional file 1 of Unveiling microbial diversity in deep geothermal fluids, from current knowledge and analogous environments

description: Additional file 1: Table S1. Diversity of microorganisms in analogous environments of geothermal power plants.
DOI: 10.6084/m9.figshare.26989780
title: Additional file 2 of Unveiling microbial diversity in deep geothermal fluids, from current knowledge and analogous environments

description: Additional file 2: Table S2. Diversity of microorganisms in geothermal power plants.
DOI: 10.6084/m9.figshare.26989780.v1
title: Additional file 2 of Unveiling microbial diversity in deep geothermal fluids, from current knowledge and analogous environments

description: Additional file 2: Table S2. Diversity of microorganisms in geothermal power plants.
DOI: 10.6084/m9.figshare.26989798
title: Additional file 2 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 2. Lists of DEGs obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Pairwise comparisons were performed considering 10 biological replicate for each condition/sampling time. DEGs reported in red and green indicated up- and down- regulated genes in investigated sites, respectively. Annotation for DEGs are also reported.
DOI: 10.6084/m9.figshare.26989798.v1
title: Additional file 2 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 2. Lists of DEGs obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Pairwise comparisons were performed considering 10 biological replicate for each condition/sampling time. DEGs reported in red and green indicated up- and down- regulated genes in investigated sites, respectively. Annotation for DEGs are also reported.
DOI: 10.6084/m9.figshare.26989801
title: Additional file 3 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 3. GSEA results obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Results are based on pairwise comparisons results performed considering 10 biological replicate for each condition/sampling time. Gene sets reported in red and green indicated up- and down- regulated pathways in investigated sites, respectively.
DOI: 10.6084/m9.figshare.26989801.v1
title: Additional file 3 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 3. GSEA results obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Results are based on pairwise comparisons results performed considering 10 biological replicate for each condition/sampling time. Gene sets reported in red and green indicated up- and down- regulated pathways in investigated sites, respectively.
DOI: 10.6084/m9.figshare.26989804
title: Additional file 4 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 4. Lists of significant taxa (at species and genus levels) obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Pairwise comparisons were performed considering 10 biological replicate (individual) for each condition/sampling time. Lists of significant taxa (at species and genus levels) obtained comparing sediments I, II, III, IV and V with control sediments are also reported. Pairwise comparisons were performed considering 3 replicates (3 sediments sampled in different tanks) for each site.
DOI: 10.6084/m9.figshare.26989804.v1
title: Additional file 4 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 4. Lists of significant taxa (at species and genus levels) obtained comparing clams exposed to sediments I, II, III, IV and V with control group at Day 3 and Day 14. Pairwise comparisons were performed considering 10 biological replicate (individual) for each condition/sampling time. Lists of significant taxa (at species and genus levels) obtained comparing sediments I, II, III, IV and V with control sediments are also reported. Pairwise comparisons were performed considering 3 replicates (3 sediments sampled in different tanks) for each site.
DOI: 10.6084/m9.figshare.26989807.v1
title: Additional file 5 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 5. List of significant taxa (ASV) obtained comparing T0 microbiota with microbiota at Day 3 and Day 14 for each site (10 biological replicates). Within each list we defined two groups: I) taxa not present in the DG microbiota at T0 and acquired from the sediments during exposure (green box); II) taxa overrepresented at Day 3 and Day 14 compared to T0 and not represented in the corresponding sediment (red box).
DOI: 10.6084/m9.figshare.26989810
title: Additional file 6 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 6. List of microbial taxa (at genus level) and transcripts (with corresponding annotation) significantly correlated at Day 3 and Day 14. For each significant correlation rho and p-value are also reported. Results were obtained considering gene expression and microbiota data obtained from a total of 120 clams.
DOI: 10.6084/m9.figshare.26989810.v1
title: Additional file 6 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 6. List of microbial taxa (at genus level) and transcripts (with corresponding annotation) significantly correlated at Day 3 and Day 14. For each significant correlation rho and p-value are also reported. Results were obtained considering gene expression and microbiota data obtained from a total of 120 clams.
DOI: 10.6084/m9.figshare.26989807
title: Additional file 5 of Contaminants from dredged sediments alter the transcriptome of Manila clam and induce shifts in microbiota composition

description: Additional file 5. List of significant taxa (ASV) obtained comparing T0 microbiota with microbiota at Day 3 and Day 14 for each site (10 biological replicates). Within each list we defined two groups: I) taxa not present in the DG microbiota at T0 and acquired from the sediments during exposure (green box); II) taxa overrepresented at Day 3 and Day 14 compared to T0 and not represented in the corresponding sediment (red box).
DOI: 10.6084/m9.figshare.26989825
title: Additional file 4 of EphrinA5 regulates cell motility by modulating Snhg15/DNA triplex-dependent targeting of DNMT1 to the Ncam1 promoter

description: Additional file 4: Table S3. Differentially methylated sites in CB cells treated with ephrinA5-Fc. Table lists all probes/sites (DMSs) with an adjusted p value ≤ 0.05 (adj. pval). Output of the function minfi::dmpFinder() for identified differentially methylated sites in CB cells treated with ephrinA5-Fc. The minfi::dmpFinder() function models the methylation ß-value of the respective CpG for each phenotype (i.e., "efnA5" or "control") with linear regression model and then determines whether the two regression models differ significantly from each other by use of an F-test. The table shows the parameters of the fitted regression models and the results of the F-test for all probes/sites (DMSs) with an adjusted p value ≤ 0.05 (adj. pval).