cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7cfnfk63b7
title: Upreti_etal_2020

description: 1) DESCRIPTION/ABSTRACT: It is assumed that to treat excess NO3- (&gt; 30 μM), high soil organic matter content (%OM) is required to maintain high denitrification rates in natural, created, or restored wetlands. However, this excess also represents a risk by increasing OM decomposition rates triggering peat collapse. Here, we evaluated the role of soil %OM and temperature interactions in controlling total and net denitrification rates using the isotope pairing and N2:Ar techniques in different habitats within eroding (Barataria Bay-BLC) and emerging (Wax Lake Delta -WLD) deltaic regions in coastal Louisiana. Soil and sediment cores were collected during summer, spring and winter (2015-2016) and incubated at close to in-situ temperatures (i.e., 30, 20 and 10 oC). Denitrification rates were linearly correlated with temperature with maximum mean rates (40.1–124.1μmol m-2 h-1) in the summer (30 oC) and lower (&lt;26.2 ± 5.3 μmol m-2 h-1) in the winter (10 oC) seasons. Direct denitrification was higher than coupled denitrification in all seasons; rates were consistently higher in WLD wetland habitats when compared to an older but degrading BLC wetland, despite of lower soil %OM and higher BD at WLD. Denitrification rates in benthic habitats were similar in both locations. We propose that even in environments with low carbon availability, high denitrification rates can be sustained as long as NO3- concentrations are high (&gt;30 μM) and water temperature is &gt;10 oC. In coastal Louisiana, substrates under these environmental regimes are represented by emergent supra-tidal flats or land created by sediment diversions under oligohaline conditions (&lt;1 ppt). 1) DATA SET: Upret et al Data_DENITRIFICATION RATES denitrification rates obtained in experimental cores in different wetland habitats 2) DATA SET: Upreti et al SEDIMENT DATA Wetland soils sediment physicochemical variables (core sediments)
DOI: 10.17632/h83w68yr7g
title: Data for: Discovering Gene-Disease Associations with Biomedical Word Embeddings

description: This is the dataset supporting the publication Discovering Gene-Disease Associations with Biomedical Word Embeddings. Finding the right target for a disease is critical in the drug development process. This paper presents a machine learning approach for predicting gene-disease associations that (i) employs biomedical word embeddings as features for a classifier trained on Open Targets Platform (OTP) data that (ii) generalises beyond a specific disease or gene class. We train, evaluate and compare different word embedding models and classifiers for the task at hand. In addition, we validate the approach by training on a past OTP release and show that it can assist in identifying probable positive associations among current low evidence associations, confirmed by a recent OTP release. Furthermore, we train word embedding models on different time slices of biomedical articles from ScienceDirect and demonstrate that the trained classifier predicts associations that have not explicitly been mentioned in the training corpus, 5 years into the future. Please send a message to Elsevier describing briefly your request on how you would like to use the assets with a short justification. Elsevier will connect directly with you for the elaboration of a personalized license. The contact information can be found in the license information.
DOI: 10.6084/m9.figshare.23504001.v1
title: HMAP Dataset 12: North-west Scotland Fisheries

description: For much of the twentieth century, the fortunes of the Scottish fishing industry were closely related to those of the herring fishery. As a consequence, total fish landings increased to unprecedented levels before 1914 due to the expansion in demand for herring products in northern Europe and the introduction of steam power into the herring fleet, a technological advance that greatly improved its catching capacity. However, the collapse of the German and Russian markets during and after the First World War depressed the herring fishery and it was not until the 1950s that landings began to increase appreciably once more, a trend that continued until the late 1970s when the herring fishery was closed for four years to enable the much-depleted stock to recover.
DOI: 10.6084/m9.figshare.28920698.v2
title: Related data

description: For mission-oriented systems designed for long-term operation, this study incorporates the time-varying value of money into the analysis. Unlike traditional maintenance strategies, the study introduces a new approach to periodic replacement policies. This approach considers variable costs and aims to improve system performance and reliability. The first step integrates the discount rate into basic periodic replacement policies. Next, the study addresses the first and last replacements to balance maintenance simplicity with economic efficiency. Numerical examples are provided for each replacement scenario, demonstrating the practical applicability and effectiveness of the proposed strategies. These examples yield valuable insights that can guide engineers in managing scheduled replacement strategies for systems designed for specific missions throughout their extended operational lifetimes.
DOI: 10.6084/m9.figshare.8048252.v14
title: ICS-209-PLUS - An all-hazards dataset mined from the US National Incident Management System 1999-2014

description: <b>Abstract</b>This paper describes a new dataset mined from the public archive (1999-2014) of the U.S. National Incident Management System/Incident Command System Incident Status Summary Form (a total of 124,411 reports for 25,083 incidents, including 24,608 wildfires). This system captures detailed information on incident management costs, personnel, hazard characteristics, values at risk, fatalities, and structural damage. Most (98.5%) of the reports are fire-related, followed in decreasing order by <i>other</i>, hurricane, hazardous materials, flood, tornado, search and rescue, civil unrest, and winter storms. The archive, although publicly available, has been difficult to use due to multiple record formats, inconsistent free-form fields, and no bridge between individual reports and high-level incident analysis. Here, we describe this improved dataset and the open, reproducible methods used, including merging records across three versions of the system, cleaning and aligning with the current system, smoothing values across reports, and supporting incident-level analysis. This integrated record offers the opportunity to explore the daily progression of the most costly, damaging, and deadly events in the U.S., particularly for wildfires.<b><br></b><b> </b><b>Data Description:</b><b><br></b>The ics209-plus-allhazards.zip file contains the complete set of cleaned all hazards situation reports ics209-plus_sitreps_1999to2014.csv<br>The ics209-plus-wildfire.zip file contains all wildfire output files including daily situation reports, the incident summary table, and complex associations. <i> </i>ics209-plus-wf_sitreps_1999to2014.csv ics209-plus-wf_incidents_1999to2014.csv ics209-plus-wf_complex_assocs_1999to2013.csv ics209-plus-wf_complex_assocs_2014.csv **<i>Deleted historical wildfire sitreps (2 files)</i><i><br></i>The ics209-plus-source.zip file contains all the yearly raw database tables and associated input files needed to run the cleaning algorithm found here:(https://github/lisestdenis/ics209plus)<br>The ics209-plus-reference.zip file contains detailed table definitions and fill rates for the Incident Summary and Daily Situation Reports Tables as well as Lookup Table definitions.<br><br><br>
DOI: 10.17632/8mt9npzyp8
title: Phytochemical Compounds in Syzygium polyanthum (Wight) Walp. Leaves Collected from Kuantan, Pahang, Malaysia: LCMS dataset

description: Syzygium polyanthum (Wight) Walp. is an ethnomedicinal plant commonly found across Southeast Asia countries that has many medicinal potentials [1]. This dataset is the LCMS data on the phytochemical compounds identified in S. polyanthum (Wight) Walp. leaves, collected from Kuantan, Pahang, a city situated on the East Coast of Peninsular Malaysia. The leaves were firstly dried in an open-air at room temperature for three weeks, ground, and then macerated in a bath-sonicator using water as a solvent. The phytochemical compounds in the aqueous extract of S. polyanthum (Wight) Walp. leaves were identified using an ultra-performance liquid chromatography equipped with an electrospray time-of-flight mass spectrometer detector, model Vion IMS LCQTOF MS 2016 (Waters, USA). Using a reversed-phase column (ACQUITY UPLC HSS (2.1 x 100 mm x 1.8 µm), the following operation conditions were utilized: operation mode (negative), analyzer mode (sensitivity), desolvation temperature (550 °C), desolvation gas flow rate (600 L/h), source type (electrospray ionization), source temperature (120 °C), cone gas (50 L/h), capillary voltage (2.50 kV), MS mode (high definition), and the scanning range: 50-1000m/z. The mass spectral features from samples raw data were matched with Traditional Medicine (en) and Waters Screening libraries in the Waters UNIFI™ Scientific Information System software version 1.7 (Waters, USA) for compounds identification.
DOI: 10.17632/z2n2f23pxw
title: Elastic Full-Waveform-Inversion

description: This dataset is prepared for the time-harmonic Elastic Full-Waveform-Inversion problem and is valuable for studying wave propagation and seismic imaging techniques.

Dataset Components:
• Part 1: Two-dimensional synthetic density fields representing Earth's density (Density_Train and Density_Test)
• Part 2: Simulated incidence waves defined as plane waves (ud)
• Part 3: Resulting elastic displacement fields on Earth's surface caused by the incident waves (Surface_Train and Surface_Test)

Dataset Creation Parameters:
• Lame parameters (λ and μ) are set equal to a constant value of 10^4 GPa.
• Circular frequency (ω) is fixed at 10.
• Number of incident waves: 9
• The fields are discretized into 51x51 parts.
DOI: 10.6084/m9.figshare.13604189.v1
title: Seqfish Mouse Gastrulation

description: Cite original article https://doi.org/10.1101/2020.11.20.391896
DOI: 10.6084/m9.figshare.13823972.v2
title: Deilephila elpenor Ommatidial and Interommatidial Measurements

description: The output ommatidial and interommatidial measurements from the ommatidia detecting algorithm microCT pipeline (ODA-3D) applied to a scan of the eye of an elephant hawkmoth (Manduca sexta).<br>
DOI: 10.6084/m9.figshare.28938587.v1
title: research data.xlsx

description: This dataset supports the systematic review titled <i>“What We Know About Parent-Mediated Joint Engagement Interventions: A Systematic Review.”</i> The review synthesized findings from 17 eligible studies examining parent-mediated interventions targeting joint engagement in young children with autism spectrum disorder (ASD). The included studies were evaluated based on What Works Clearinghouse (WWC) standards and analyzed for participant characteristics, intervention features, and outcome measures. The data provide an overview of study designs, participant demographics, intervention types (including frequent use of JASPER-based strategies), and key outcomes such as improvements in joint attention, symbolic play, and social interaction. This dataset offers researchers a comprehensive overview of the current evidence base on joint engagement interventions and contributes to the development of future research and practices in early autism intervention.
DOI: 10.6084/m9.figshare.14236547.v1
title: Supplementary Material for: The Effect of Saffron Consumption on Liver Function: A Systematic Review and Meta-Analysis of Randomized Controlled Clinical Trials

description: <b><i>Background and Aims:</i></b> The present systematic review and meta-analysis of randomized controlled trials aimed to determine the effects of saffron supplementation on liver function tests among adults. <b><i>Methods:</i></b> Electronic databases including PubMed, ISI Web of Science, and Scopus were searched up to January 2021. The risk of bias in individual studies was assessed using the Cochrane Collaboration tool. The overall estimates and their 95% CIs were calculated using random-effects models. Egger’s test and Begg’s rank-correlation were run to assess the presence of publication bias. <i>p</i> &lt; 0.05 was considered statistically significant. <b><i>Results:</i></b> A total of 12 trials involving 608 participants were included in this systematic review and meta-analysis. Saffron supplementation had no significant effect on liver function tests including aspartate transaminase (AST) (weighted mean difference [WMD] = 0.23 U/L; 95% CI –2.22 to 2.69; <i>p</i> = 0.851; <i>I</i><sup>2</sup> = 74.0%), alanine aminotransferase (ALT) (WMD = –1.49 U/L; 95% CI –3.84 to 0.86; <i>p</i> = 0.213; <i>I</i><sup>2</sup> = 60.2%), and alkaline phosphatase (ALP) (WMD = –0.70 U/L; 95% CI –11.35 to 9.95; <i>p</i> = 0.898; <i>I</i><sup>2</sup> = 40.8%) compared to placebo. <b><i>Conclusion:</i></b> Based on what was discussed, it seems that saffron supplementation could not improve liver function tests including AST, ALT, and ALP among the adult population. Further clinical trials with larger sample size, longer duration, and higher doses of saffron should be conducted exclusively among patients with liver dysfunction to elucidate the beneficial role of saffron consumption on liver function.
DOI: 10.6084/m9.figshare.19654794.v1
title: Figure 5 - Antp mutant GCaMP activity and calibration

description: Data for Figure 5 comparison of Antp mutants and controls in calcium activity. <br> xfixedGobal : parameterizes the position along the AP axis of the midgut (projected position, in the Eulerian frame) <br> fixTimeStamps : parameterizes time since the onset of the anterior constriction. <br> Then, kymoMControl is the corresponding GCaMP activity (defined below) in this spacetime grid for Antp heterozygotes. <br> kymoM is the corresponding GCaMP activity in the spacetime grid for homozygotes (mutant for Antp). In order to remove background signal, the activity is defined as deltaI = |I1-I2| + |I1-I3| + |I2-I3|, which captures the transient activity between rapidly acquired stacks I1, I2, and I3. So, each timepoint measurement is a summed difference between frames taken 9-10 seconds apart. <br> In order to compare absolute scales in intensity, we calibrated the expected maximum intensity based on the signal-to-noise ratios observed in the heterozygotes. This information is provided in noise_model. <br> nsamplesControl is a spacetime grid of how many embryos participate in the mean measurement kymograph kymoMControl. Similarly, nsamples is a spacetime grid of how many samples participate in the mean measurement reported in kymoM.
DOI: 10.6084/m9.figshare.21365310.v1
title: To produce or not to produce? Contrasting the effect of substance abuse in social decision-making situations

description: We developed a real-time interaction task to (a) compare the proportion of producers (individuals who tend to search for food sources) and scroungers (individuals who tend to steal or join previously discovered food sources) among participants with SUD and controls with respect to the optimal behavior predicted by the Rate Maximization Model, and (b) explore the relationship between social foraging strategies, prosocial behavior, and impulsivity.
DOI: 10.6084/m9.figshare.26235677.v1
title: <b>Development and validation of the Climate Change Anxiety Scale-Short Form</b>

description: <b>Development and validation of the Climate Change Anxiety Scale-Short Form</b>
DOI: 10.6084/m9.figshare.6723656.v1
title: Supplementary Material for: A Randomized Clinical Trial of Flex 19G Needles versus 22G Needles for Endobronchial Ultrasonography in Suspected Lung Cancer

description: <b><i>Background:</i></b> A flexible 19-gauge (Flex 19G) needle has been developed for endobronchial ultrasonography. <b><i>Objectives:</i></b> We aimed to evaluate quantitative and qualitative specimen characteristics of Flex 19G in a randomized controlled setting for patients with suspected lung cancer. <b><i>Methods:</i></b> We undertook a single-center, randomized, controlled trial. A computer-generated randomization assigned all enrolled patients 1: 1 to undergo endobronchial ultrasonography using a Flex 19G or a 22-gauge (22G) needle for lymph node tissue sampling. Pathologists were blinded to the group assignment. The primary end point was histological tissue core procurement. The secondary end points were diagnostic yield, specimen bloodiness and overall quality, tissue surface area and performance for next-generation sequencing (NGS), and procedure-related complications. <b><i>Results:</i></b> Between June 2016 and February 2017, we randomly allocated a total of 78 patients: 39 patients to Flex 19G and 39 patients to 22G. No superiority in tissue core procurement was observed for Flex 19G compared to 22G (67 vs. 72%, <i>p</i> = 0.81). No significant difference was observed in diagnostic yield and overall specimen quality, but transbronchial needle aspiration specimens by Flex 19G were bloodier and had a larger tissue surface area. NGS was successful for clinically relevant genes in 96% and for all 26 genes tested in 81% of the samples. There was no difference in clinically relevant complications. <b><i>Conclusions:</i></b> No superiority is observed for Flex 19G in histological tissue core procurement rate. The Flex 19G needle could be considered when a larger tissue surface is of special interest.
DOI: 10.17632/c4338zhbrg
title: Data Underlying the Publication: Spatio-temporal trends of the relationships between surface PM2.5 and its chemical constituents across three COALESCE network locations in India: A mass closure investigation

description: Details about the dataset is provided in the manuscript - "Spatio-temporal trends of the relationships between surface PM2.5 and its chemical constituents across three COALESCE network locations in India: A mass closure investigation" published in JGR: Atmospheres
DOI: 10.17632/jzvcgcxd9f
title: Potential Industrial Vacant Land of 3 Representative Chinese Resource-Based cities

description: This is the supplementary data to the paper "Large-scale automatic identification of Industrial Vacant Land: An open-source approach using semantic segmentation of remote sensing images and multi-source data", which shows the potential industrial vacant land identification results in Tangshan, Huangshi, and Xinyu, which are 3 representative Chinese resource-based cities.

The files include the shapefile label files of potential industrial vacant land in 3 cities, and the corresponding RS image, which have been segmented into 256px * 256px rasters. The filename formats are as follows:
(1) Label: LB
(2) Rs image: YX
The code is available at https://github.com/Sunyh20/Large-scale-Automatic-Identification-of-Industrial-Vacant-Land.
DOI: 10.26180/27193851.v1
title: Micro-SAXS colloidal glasses February 2020

description: This archive contains the SAXS data acquired in February 2020 at the SAXS/WAXS beamline Australian Synchrotron by Amelia Liu, Stephen Mudie, Tim Petersen and Rico Tabor.The x-ray beam energy was 5.5 keV. The beam was defined using a near-field gold aperture (25 microns thick and 1.2 micron OD). The specimens were 20 micron thick layers of colloidal glasses composed of SiO2 microspheres (300 nm OD) and sandwiched between two Kapton layers 15 microns in thickness. A Kapton layer was used as the 20 micron spacer. The archive contains:Cropped micro-SAXS diffraction patterns (180x180) from spatio-temporal scans (148x21) in .tif format. Each pixel is 6.6e-5 Angstrom<sup>-1</sup>. The spatio-temporal scans were conducted in 0.5 micron steps. Each line in the x-direction was scanned twice at an interval of 30 s to examine structural variations in each micro-volume with time. Files are named according to this convention 'dp_x_y_t.tif'. The first scan is denoted with t ='a' and the second with a t='b'. Diffraction patterns were collected using a Dectris - Pilatus 2M direct detection camera at a camera length of 7244 mm. A colloidal glass was scanned before and after a shear strain was applied by drawing a thin copper wire through the glass at a rate of approximately 0.1 mm/s and a distance of 0.2 mm. This would have induced a shear strain in the x-direction that varied linearly with distance from the wire.An area below the wire was scanned. Please see the file geometry.pdf to see the geometry of the applied strain with respect to the scan directions.Scanned areas were chosen where the glass thickness was homogeneous, visible fibres/dust etc could not be seen, and the beam intensity was stable.
DOI: 10.6084/m9.figshare.12082134.v1
title: Results of 5-fold cross validation on CVC-FP

description: This link provides the results of the 5-fold cross-validation dataset. The results are stored as shapefiles and named after the name of floor plan images.
DOI: 10.6084/m9.figshare.26036569.v1
title: The final chromosome-level assembled genome file and Genome annotation files of Phortica okadai

description: The final chromosome-level assembled genome file and Genome annotation files of Phortica okadai
DOI: 10.6084/m9.figshare.7443326.v1
title: VP1_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.17632/4m3y8ntd76
title: Santris' Response to Political Hoaxes in the 2024 Election on Social Media

description: This data is supporting data for a study entitled "Response of Santris to Political Hoaxes in the 2024 Election on Social Media." This data includes various findings related to how santris responded to political hoaxes circulating on social media during the 2024 Election. The information in this data was obtained through relevant research methods, such as interviews, surveys, social media analysis, or literature studies.
DOI: 10.17632/yw67pwg352
title: Species-specific reduction of survival and aphid consumption in temperate ladybirds exposed to prolonged and intensified heat waves
DOI: 10.6084/m9.figshare.1181910.v5
title: Flower-visitor networks across seven sites

description: The data set consists of community level plant-visitor interaction data sampled across seven sites of Campos Rupestres (Rupestrian fields) in SE Brazil. Data was collected over ca. 2 1/2 months in 2012. For details and citation: Carstensen, DW., Sabatino, M., Trøjelsgaard, K., Morellato, LPC. 2014. Beta Diversity of Plant-Pollinator Networks and the Spatial Turnover of Pairwise Interactions. PLoS ONE 9(11) e112903.
DOI: 10.6084/m9.figshare.16674010.v1
title: Base de datos sobre "Reformas a los Delitos Electorales y sus Sanciones en América Latina"

description: El Observatorio de Reformas Políticas en América Latina presenta la siguiente base de datos que contiene información sobre las reformas políticas a los delitos electorales y sus sanciones.