cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/c2cdce07ebfea87b3a8d61a38f904cf4
title: Fall 2006 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2006 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.15468/dl.cf8uzs
title: Occurrence Download

description: A dataset containing 75100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Country is Germany"
 ]
}

 The dataset includes 75100 records from 233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000963-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv2faq
title: Occurrence Download

description: A dataset containing 45839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coccinella septempunctata Linnaeus, 1758",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "Country is Germany"
 ]
}

 The dataset includes 45839 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000965-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/af2e227c108e8f255f353980e9f7a112
title: Fall 2007 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2007 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.6073/pasta/bc3cad2310fcde5367dd321f25adae45
title: Fall 2008 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2008 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional disturbance details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.6084/m9.figshare.27623892
title: Emergence of highly virulent Aeromonas dhakensis in channel catfishaquaculture: genomic insights into pathogenicity and antimicrobial resistance

description: Aeromonas dhakensis has emerged as a significant pathogen in aquaculture, causing severe disease outbreaks and resulting in substantial economic losses. However, its pathogenic mechanism and virulence factors remain largely unexplored. In this study, we isolated ahighly virulent strain of A. dhakensis, CWH5, from a severe disease outbreak in farmed channel catfish (Ictalurus punctatus). Through comprehensive whole-genome analysis, we elucidated its pathogenicity and the genetic basis for its high virulence and multi-antimicrobial resistance in channel catfish. Experimental infections showed that CWH5 exhibited exceptional virulence, with an LD50 of 7.94×10⁴ CFU/mL and causing 100% mortality within 72 h at a concentration of 10⁷ CFU/mL. Histopathological examinations revealed severe multi-organ damage, including extensive hepatocellular necrosis, gill epithelial destruction, and fin tissue deterioration. Whole-genome sequencing revealed a 4.92 Mb circular chromosome encoding sophisticated virulence mechanisms, such as complete Type III, IV, and VI secretion systems, and a vast arsenal of 60 antibiotic resistance genes across 15 drug classes. Comparative genomic analysis positioned CWH5 within the A. dhakensis clade, sharing the highest sequence similarity with A. dhakensis CIP 107500ᵀ. The co-localization of virulence and resistance determinants within mobile genetic elements suggests the potential for horizontal gene transfer. Our work underscored the importance of A. dhakensis CWH5 as an emerging pathogen in channel catfish aquaculture, providing crucial insights into the molecular mechanisms of its exceptional virulence and implying significant implications for disease management and antimicrobial resistance surveillance in aquaculture settings.
DOI: 10.6084/m9.figshare.27623892.v1
title: Emergence of highly virulent Aeromonas dhakensis in channel catfishaquaculture: genomic insights into pathogenicity and antimicrobial resistance

description: Aeromonas dhakensis has emerged as a significant pathogen in aquaculture, causing severe disease outbreaks and resulting in substantial economic losses. However, its pathogenic mechanism and virulence factors remain largely unexplored. In this study, we isolated ahighly virulent strain of A. dhakensis, CWH5, from a severe disease outbreak in farmed channel catfish (Ictalurus punctatus). Through comprehensive whole-genome analysis, we elucidated its pathogenicity and the genetic basis for its high virulence and multi-antimicrobial resistance in channel catfish. Experimental infections showed that CWH5 exhibited exceptional virulence, with an LD50 of 7.94×10⁴ CFU/mL and causing 100% mortality within 72 h at a concentration of 10⁷ CFU/mL. Histopathological examinations revealed severe multi-organ damage, including extensive hepatocellular necrosis, gill epithelial destruction, and fin tissue deterioration. Whole-genome sequencing revealed a 4.92 Mb circular chromosome encoding sophisticated virulence mechanisms, such as complete Type III, IV, and VI secretion systems, and a vast arsenal of 60 antibiotic resistance genes across 15 drug classes. Comparative genomic analysis positioned CWH5 within the A. dhakensis clade, sharing the highest sequence similarity with A. dhakensis CIP 107500ᵀ. The co-localization of virulence and resistance determinants within mobile genetic elements suggests the potential for horizontal gene transfer. Our work underscored the importance of A. dhakensis CWH5 as an emerging pathogen in channel catfish aquaculture, providing crucial insights into the molecular mechanisms of its exceptional virulence and implying significant implications for disease management and antimicrobial resistance surveillance in aquaculture settings.
DOI: 10.6073/pasta/bc399eb53c1695cf3ce42608017a65c2
title: Fall 2009 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2009 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.6073/pasta/ac00482f823d2a060e1ecc0fce1b8aca
title: Fall 2010 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2010 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003, 2004, 2009 and 2010 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.15468/dl.gt4fdy
title: Occurrence Download

description: A dataset containing 678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dermanura watsoni (Thomas, 1901)",
 "Year 1000-2024"
 ]
}

 The dataset includes 678 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000968-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/90373f59d9f5163fef72f9cccffb7688
title: Soil salinity and organic content at GCE-LTER vegetation monitoring plots in October 2009

description: Soil samples were collected in conjunction with Fall 2009 plant monitoring at half of the permanent vegetation monitoring plots in the creekbank and midmarsh zones at 10 GCE study sites. Pore-water salinity was determined by analysis of supernatant salinity in dried soil samples hydrated with a measured volume of deionized water. Organic content was measured gravimetrically by comparing ash-free dry weight and total weight of soil samples.
DOI: 10.6073/pasta/9469e845b70bfbaaf3869de7d704824b
title: Fall 2011 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2011 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003, 2004, 2009 and 2010 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.15468/dl.fsgpbm
title: Occurrence Download

description: A dataset containing 137490 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Big Hedgehog Map records"
 ]
}

 The dataset includes 137490 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000933-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/d6ab31e17f7579c8d1134afce1820cb4
title: Fall 2012 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2012 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003, 2004, 2009, 2010 and 2012 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set with additional details recorded in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.15468/dl.mnr7nt
title: Occurrence Download

description: A dataset containing 5606 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anoura geoffroyi Gray, 1838"
 ]
}

 The dataset includes 5606 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000969-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/57891bcd993c3343ddf1c72772510c7c
title: Fall 2013 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2013 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003, 2004, 2009, 2010 and 2012 to replace those lost due to catastrophic wrack disturbance or creek bank erosion, and the creek bank plots at site 3 were relocated in 2013 due to a shift in the creek location. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set, and an additional set of observations were recorded for the creek bank zone at site 3 prior to relocation (identified as Zone -1) for comparison with the relocated plots. Detailed disturbance data can be found in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.5281/zenodo.14046882
title: Data for training BNN model
DOI: 10.5281/zenodo.14046883
title: Data for training BNN model
DOI: 10.6073/pasta/4f0c0cb6f27ae791769705e111306b12
title: Fall 2014 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2014 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). New plots were added each year as necessary to replace those lost due to catastrophic wrack disturbance or creek bank erosion, and the creek bank plots at site 3 were relocated in 2013 due to a shift in the creek location. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set, and an additional set of observations were recorded for the creek bank zone at site 3 prior to relocation (identified as Zone -1) for comparison with the relocated plots. Detailed disturbance data can be found in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.6073/pasta/a6269f79b2ca601f77c865ac2ef5d86c
title: Fall 2015 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: A quadrat survey was conducted in October 2015 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). New plots were added each year as necessary to replace those lost due to catastrophic wrack disturbance or creek bank erosion, and the creek bank plots at site 3 were relocated in 2013 due to a shift in the creek location. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set, and an additional set of observations were recorded for the creek bank zone at site 3 prior to relocation (identified as Zone -1) for comparison with the relocated plots. Detailed disturbance data can be found in GCE data set PLT-GCEM-1801. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
DOI: 10.15468/dl.cstwnj
title: Occurrence Download

description: A dataset containing 1026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetramorium immigrans Santschi, 1927",
 "Country is Canada",
 "InstitutionCode is iNaturalist"
 ]
}

 The dataset includes 1026 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000970-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5vh5cw30
title: MassIVE MSV000096319 - Self-organizing human heart organoids with an autologous tissue-resident macrophage immune niche
title: Mascot parameters for all databases were as follows: Allow up to 2 missed tryptic sites Fixed modification of Carbamidomethyl Cysteine, Variable modification of Oxidation of Methionine, Peptide tolerance of /- 10ppm MS/MS tolerance of 0.02 Da FDR calculated using randomized database search
DOI: 10.15468/dl.zmtcn7
title: Occurrence Download

description: A dataset containing 2227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poa pratensis L.",
 "VerbatimScientificName is Poa pratensis L."
 ]
}

 The dataset includes 2227 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000971-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13869523
title: Data from systematic review of uses of remote sensing in disease ecology

description: These data accompany the paper "The potential of remote sensing for improved infectious disease ecology research and practice" by Teitelbaum, C., Ferraz, A., De La Cruz, S.E.W., Gilmour, M.E., and Brosnan, I.G.. Each .csv file contains data from primary articles that used remote sensing to study disease ecology. Studies are identified by a unique study ID in each table; relationships between tables are usually many-to-many, except for the biobliographic details, which contains only one entry per article. The metadata.csv file describes columns in all sheets.
DOI: 10.15468/dl.jzmk3u
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-74.09314 4.65157,-74.0955 4.6499,-74.09084 4.6422,-74.08753 4.6445,-74.08592 4.64689,-74.09275 4.65184,-74.09314 4.65157))"
 ]
}

 The dataset includes 202 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000973-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yaxwd8
title: Occurrence Download

description: A dataset containing 8790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 8790 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000972-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.