cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g6d91493
title: Data from: Genetic drift and rapid evolution of viviparity in insular fire salamanders (Salamandra salamandra)

description: Continental islands offer an excellent opportunity to investigate adaptive
 processes and to time microevolutionary changes that precede
 macroevolutionary events. We performed a population genetic study of the
 fire salamander (Salamandra salamandra), a species that displays unique
 intraspecific diversity of reproductive strategies, to address the
 microevolutionary processes leading to phenotypic and genetic
 differentiation of island, coastal and interior populations. We used eight
 microsatellite markers to estimate genetic diversity, population
 structure, and demographic parameters in viviparous insular populations
 and ovoviviparous coastal and interior populations. Our results show
 considerable genetic differentiation (FST range: 0.06 - 0.27), and no
 clear signs of gene flow among populations, except between the large and
 admixed interior populations. We find no support for island colonization
 by rafting or intentional/accidental anthropogenic introductions,
 indicating that rising sea levels were responsible for isolation of the
 island populations approximately 9,000 years ago. Our study provides
 evidence of rapid genetic differentiation among island and coastal
 populations, and rapid evolution of viviparity driven by climatic
 selective pressures on island populations, geographic isolation with
 genetic drift, or a combination of these factors. Studies of these
 viviparous island populations in early stages of divergence help us better
 understand the microevolutionary processes involved in rapid phenotypic
 shifts.
description: Genotypes_S.
 salamandraThe archive contains
 microsatellite genotypes of seven populations of Salamandra
 salamandra.
DOI: 10.5061/dryad.p20n8
title: Data from: Fungal interactions reduce carbon use efficiency

description: The efficiency by which fungi decompose organic matter contributes to the
 amount of carbon that is retained in biomass vs. lost to the atmosphere as
 respiration. This carbon use efficiency (CUE) is affected by various
 abiotic conditions, including temperature and nutrient availability.
 Theoretically, the physiological costs of interspecific interactions
 should likewise alter CUE, yet the magnitude of these costs is untested.
 Here we conduct a microcosm experiment to quantify how interactions among
 wood-decay basidiomycete fungi alter growth, respiration and CUE across a
 temperature and nitrogen gradient. We show that species interactions
 induced consistent declines in CUE, regardless of abiotic conditions.
 Multispecies communities exhibited reductions in CUE of up to 25% relative
 to individual CUE, with this biotic effect being greater than the observed
 variation attributable to abiotic conditions. Our results suggest that the
 extent to which fungal-mediated carbon fluxes respond to environmental
 change may be influenced strongly by species interactions.
description: Community_dataResults of the community outcomes.Individual_dataResults for individual microcosms
DOI: 10.5061/dryad.tb23m
title: Data from: Life-history multistability caused by size-dependent mortality

description: Body size is a key determinant of mortality risk. In natural populations,
 a broad range of relationships are observed between body size and
 mortality, including positive and negative correlations. Previous
 evolutionary modelling has shown that negatively size-dependent mortality
 can result in life-history bistability, with early maturation at small
 size and late maturation at large size representing alternative fitness
 optima. Here we present a general analysis of conditions under which such
 life-history bistabilities can occur, reporting the following findings.
 First, alternative fitness optima can be found for any arbitrarily chosen
 forms of mortality functions, including functions according to which
 mortality smoothly declines with size. Second, while bistabilities occur
 more readily under negatively size-dependent mortality, our analysis
 reveals that they can also emerge under positively size-dependent
 mortality, a feature missed in earlier work. Third, any sharp drop of
 mortality with size facilitates bistability. Fourth, if the mortality
 regime involves more than one such sharp drop, multistable life histories
 can occur, with alternative fitness optima straddling each of the drops.
 Paradoxically, our findings imply that, fifth, a species-poor predator
 community capable of creating a 'rugged' mortality regime is
 conducive to evolutionary multistability, which could act as a stepping
 stone toward prey life-history diversification, whereas a species-rich
 predator community that results in a smoothly varying mortality regime may
 prevent diversification through this pathway.
description: Model and Scanning
 algorithmMathematica code to find
 combinations of size-dependent mortality and size-independent mortality
 where F(sM) has three zerosTaborsky et al._Code for Model
 and Scanning algorithm.pdf
DOI: 10.5281/zenodo.18383822
title: Geochemical data of minerals and rocks from the Barrovian metamorphic sequence and the metamorphic country rocks surrounding the Li deposits

description: Geochemical data of minerals and rocks from the Barrovian metamorphic sequence and the metamorphic country rocks surrounding the Li deposits

Supplementary Table 1 Sample details of global Barrovian metamorphic sequences and metamorphic country rocks from pegmatite-type Li deposits/pegmatite fields 

Supplementary Table 2 Metamorphic grade, P-T condition, and the modal mineral composition of the Aletai Barrovian metamorphic sequence from the Chinese Altai orogen

Supplementary Table 3 Whole-rock major and trace element compositions of the Barrovian metamorphic rock and sedimentary protolith from the Chinese Altai

Supplementary Table 4 Mineral geochemistry of the Aletai Barrovian metamorphic sequence, Chinese AltaiSupplementary Table 5 In-situ LA-ICP-MS trace elemental compositions of staurolites and micas from Barrovian metamorphic sequence worldwide

Supplementary Table 6 In-situ LA-ICP-MS trace elemental compositions of staurolites and micas from metamorphic country rocks of Li deposits/pegmatite fieldsSupplementary Table 7 Mineral Li contents and partition coefficient of the studied samples

Supplementary Table 8 Modeling and calculations

Supplementary Table 9 Dataset of whole-rock Li of metapelites
DOI: 10.5281/zenodo.18383823
title: Geochemical data of minerals and rocks from the Barrovian metamorphic sequence and the metamorphic country rocks surrounding the Li deposits

description: Geochemical data of minerals and rocks from the Barrovian metamorphic sequence and the metamorphic country rocks surrounding the Li deposits

Supplementary Table 1 Sample details of global Barrovian metamorphic sequences and metamorphic country rocks from pegmatite-type Li deposits/pegmatite fields 

Supplementary Table 2 Metamorphic grade, P-T condition, and the modal mineral composition of the Aletai Barrovian metamorphic sequence from the Chinese Altai orogen

Supplementary Table 3 Whole-rock major and trace element compositions of the Barrovian metamorphic rock and sedimentary protolith from the Chinese Altai

Supplementary Table 4 Mineral geochemistry of the Aletai Barrovian metamorphic sequence, Chinese AltaiSupplementary Table 5 In-situ LA-ICP-MS trace elemental compositions of staurolites and micas from Barrovian metamorphic sequence worldwide

Supplementary Table 6 In-situ LA-ICP-MS trace elemental compositions of staurolites and micas from metamorphic country rocks of Li deposits/pegmatite fieldsSupplementary Table 7 Mineral Li contents and partition coefficient of the studied samples

Supplementary Table 8 Modeling and calculations

Supplementary Table 9 Dataset of whole-rock Li of metapelites
DOI: 10.5061/dryad.51s498d
title: Data from: Selection of early soybean inbred lines using multiple indices

description: Soybean [Glycine max (L.) Merr.] has been studied and enhanced for most of
 its economically important traits. Previous research has studied the
 association among them and the effect of the genotype × environment
 interaction; however, less is known about their correlation considering
 absolute maturity, as well as the use of multiple selection indices to
 study the genotype × environment interaction and select superior
 cultivars. Regarding this, the aim of the present study was to identify
 lines that associate precocity, good yield performance, and high oil and
 protein contents in the grains, as well as to estimate the correlation
 among these traits and study the effect of genotype × environment
 interaction using a standardized multiple selection index. Trials were
 conducted in two crop seasons in the state of Minas Gerais, Brazil, with
 39 lines in 13 evaluation environments. The experiments were conducted in
 a randomized complete block design with four replications, and the grain
 yield, absolute maturity, and oil and protein contents in the grains were
 evaluated. The results indicated high experimental precision and accuracy,
 with significant differences among lines for all traits. High-magnitude
 correlations between evaluated traits were found, highlighting the
 negative correlation between absolute maturity and protein content in the
 grains. The genotype × environment interaction was also significant, and
 the use of the multiple selection index was efficient to identify superior
 and stable inbred lines by the genotype + genotype × environment (GGE)
 biplot method, which explained 82.23% of the genotype × environment
 interaction effect. Lines 27 and 31 stood out from the others because they
 associated stability and good performance for all evaluated traits.
description: Field
 DataThis is the file
 containing the field data of the experiments.field_data.txtLaboratory DataThis is the file containing the laboratory data of the experiments.lab_data.txt
DOI: 10.5061/dryad.1600
title: Data from: Relatedness and spatial proximity as determinants of host-parasite interactions in the brood parasitic Barrow's goldeneye (Bucephala islandica)

description: Recent studies which have found evidence for kin-biased egg donation have
 sparked interest in re-assessing the parasitic nature of conspecific brood
 parasitism (CBP). Since host-parasite kinship is essential for mutual
 benefits to arise from CBP, we explored the role of relatedness in
 determining the behaviour of conspecific nest parasites and their hosts in
 nesting female Barrow's goldeneyes (Bucephala islandica), a duck in
 which CBP is common. The results revealed that the amount of parasitism
 increased with host-parasite relatedness, the effect of which was
 independent of geographic proximity of host and parasite nests. Proximity
 per se was also positively associated with the amount of parasitism.
 Furthermore, while hosts appeared to reduce their clutch size as a
 response to the presence of parasitic eggs, the magnitude of host clutch
 reduction also tended to increase with increasing relatedness to the
 parasite. Hence, our results indicate that both relatedness and spatial
 proximity are important determinants of CBP, and that host clutch
 reduction may be an adaptation to nest parasitism, modulated by
 host-parasite relatedness. Taken together, the results provide a
 demonstration that relatedness influences host and parasite behaviour in
 Barrow's goldeneyes, resulting in kin-biased egg donation.
description: FemaleData.csvFile containing information on females in the study, including age (minimum age based on ringing data), condition (residuals from regression of weight on structural size; not used in the manuscript) and breeding pond number.Availability.csvAvailability matrix. This matrix describes whether a female was available for parasitism by others. for more details see the publicationExchange.csvThis file contains a matrix describing the exchange of eggs between females.Distance.csvThis file contains a matrix of the geographical distances (km) between females.FemaleData.csvFile containing information on females in the study, including age (minimum age based on ringing data), condition (residuals from regression of weight on structural size; not used in the manuscript) and breeding pond number.Relatedness.csv
DOI: 10.5061/dryad.6jt0n
title: Data from: Partitioning the relative contribution of one-phase and two-phase seed dispersal when evaluating seed dispersal effectiveness

description: Seed dispersal effectiveness (SDE) is a conceptual framework that aims at
 quantifying the contribution of seed dispersal vectors to plant fitness.
 While it is well recognized that diplochorous dispersal systems,
 characterized by two successive dispersal steps performed by two different
 vectors (Phase I = primary seed dispersal and Phase II = secondary seed
 dispersal) are common in temperate and tropical regions, little attention
 has been given to distinguishing the relative contribution of one-phase
 and two-phase dispersal to overall SDE. This conceptual gap probably
 results from the lack of a clear methodology to include Phase II dispersal
 into the calculation of SDE and to quantify its relative contribution. We
 propose a method to evaluate the relative contribution of one-phase and
 two-phase dispersal to SDE and determine whether two seed dispersers are
 better than one. To do so, we used the SDE landscape and an extension of
 the SDE landscape, the Phase II effect landscape, which measures the
 direction and magnitude of the Phase II dispersal effect on overall SDE.
 We used simulated and empirical data from a diplochorous dispersal system
 in the Peruvian Amazon to illustrate this new approach. Our approach
 provides the relative contribution of one-phase SDE (SDE1) and two-phase
 SDE (SDE2) to overall SDE and quantifies how much SDE changes with the
 addition of Phase II dispersal. Considering that the seed dispersal
 process is context-dependent so that Phase II depends on Phase I, we
 predict the possible range of variation of SDE according to the variation
 of the probability of Phase II dispersal. In our specific study system
 composed of two primate species as primary dispersal vectors and different
 species of dung beetles as secondary dispersal vectors, the relative
 contribution of SDE1 and SDE2 to overall SDE varied between plant species.
 We discuss the context-dependency of the Phase II dispersal and the
 potential applications of our approach. This extension to the conceptual
 framework of SDE enables quantitative evaluation of the effect of Phase II
 dispersal on plant fitness and can be easily adapted to other biotic
 and/or abiotic diplochorous dispersal systems.
description: Culot_etal_MEE_qualityThis data file contains the empirical data used to determine the quality component (Qu) of seed dispersal effectiveness (SDE) for the SDE landscape and the Phase II effect landscape (Qu1 and Qu2).Culot_etal_MEE_quantityThis data file contains the data used to determine the extrapolated number of seeds dispersed by both species of tamarins (Saguinus nigrifrons and Saguinus fuscicollis), corresponding to the quantity component of seed dispersal effectiveness (SDE). These data were used to build the SDE landscape.
DOI: 10.15468/dl.garbbz
title: Occurrence Download

description: A dataset containing 1410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "TaxonKey is Cordia dichotoma"
 ]
}

 The dataset includes 1410 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001131-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.nr028
title: Data from: Investigating movement in the laboratory: dispersal apparatus designs and the red flour beetle, Tribolium castaneum

description: The natural dispersal of Tribolium castaneum Herbst (Coleoptera:
 Tenebrionidae) has been emulated in the laboratory for more than 50 years,
 using a simple dispersal apparatus. This has typically comprised of a
 starting container (initial resource or patch) connected by tubing, which
 contains thread for the animals to climb into a tube and hence to an end
 container. That is, beetles move to a new viable resource or patch from an
 inter-patch zone or non-viable habitat. We modified this basic apparatus
 design to test the effect of tubing length and tubing insertion angle on
 the dispersal rate and proportion of successful dispersers. We expected
 that the proportion of successful dispersers would be repeatable within
 each apparatus design, and that increasing tubing length and steepness of
 the insertion angle would reduce dispersal rate and success across
 apparatus designs. Dispersal increased linearly through time, similarly so
 for both males and females. The design with the most vertical tubing
 insertion angle had a lower proportion of successful dispersers. Tubing
 length also had a negative relationship with dispersal success (as judged
 by insects reaching the end container), but a significant reduction in
 dispersal success was only apparent between the shortest and longest
 tubing between containers. We suggest that locating and climbing the
 vertical section of string before they can enter the tubing between
 containers restricts dispersal and that at higher densities, insects
 exhibit greater inclination to climb. This type of apparatus has flexible
 design tolerances and further potential to study the dispersal of other
 small insect species that primarily use pedestrian locomotion.
description: Dispersal apparatus
 beetle countsRaw data from the counts
 of beetles dispersing through the different dispersal apparatus
 designs.eea.12551_apparatus_raw_data.xlsx
DOI: 10.5061/dryad.24g415k
title: Data from: Petrol exhaust pollution impairs honey bee learning and memory

description: Volatile organic compounds (VOCs) serve as important infochemicals,
 mediating several ecological interactions including herbivory and
 pollination. Atmospheric pollutants including traffic-related air
 pollution may impair the detection of VOCs used by insects in insect-plant
 interactions. We investigated the indirect effect of petrol exhaust
 pollution on olfactory learning and memory (short and long term) in honey
 bees. Using appetitive olfactory conditioning, we trained bees to learn
 one of four floral VOC profiles; linalool, dipentene, myrcene and
 geranium. VOCs were unpolluted or polluted with exhaust collected from a
 petrol generator. Exhaust emissions included concentrations of CO (246.07
 + 17 ppm), NO (20.50 + 6.90 ppb) and NO2 (20.93 + 0.05 ppb) consistent
 with those typically encountered in urban areas and near roads. Once bees
 had learnt the training VOC, we tested whether they could recognise that
 VOC 1 hour, 24 hours and 48 hours post-training. Bees took significantly
 longer to learn polluted VOCs and forgot them faster than unpolluted ones.
 We also tested the ‘masking’ potential of pollution on floral VOCs. Using
 Gas Chromatography Mass Spectroscopy we noted differences in the chemical
 profile of polluted versus unpolluted VOCs and tested whether bees could
 recognise polluted VOCs if trained using unpolluted ones. For several VOCs
 tested, bees could distinguish between polluted and unpolluted VOCs.
 Ultimately, our results show that air pollution changes the recognition
 and retention of floral VOCs by bees which may consequently impact
 foraging efficiency.
description: Leonard et
 al._OIKOS_2018Sheet 1 (Absolute
 conditioning): Absolute PER conditioning protocol using 6 conditioning
 trials. Conditioned stimulus (predictor variable) included 8 volatiles
 (linalool, dipentene, myrcene, geranium, linalool and petrol pollution,
 dipentene and petrol pollution, myrcene and petrol pollution, geranium and
 petrol pollution). Response variable = proboscis extension (binary
 response following exposure to conditioned stimuli: 0 no proboscis
 extension, 1 proboscis extension). Sheet 2 (Recall tests): Proboscis
 extension following exposure to 1 of 8 conditioned stimuli (linalool,
 dipentene, myrcene, geranium, linalool and petrol pollution, dipentene and
 petrol pollution, myrcene and petrol pollution, geranium and petrol
 pollution), 1 hr, 24 hrs and 48 hrs post conditioning. Response to
 conditioned stimuli and conditioned stimuli with or without the addition
 of petrol exhaust pollution was recorded.
DOI: 10.5061/dryad.k78c0
title: Data from: Radial variation of wood functional traits reflect size-related adaptations of tree mechanics and hydraulics

description: 1) Wood serves for mechanical support, water transport and storage. These
 functions are provided for by different cells with a large variation in
 wood anatomy among species but also within individual trees. The latter
 often reflects ontogenetic adjustments, related to tree size or age, which
 can be studied by looking at patterns of radial variation in wood. 2) We
 quantified radial variation in wood density (WD) and wood anatomy and ask
 how ontogenetic changes of wood functions are controlled in five canopy
 tree species in western Thailand. We ask if there are trade-offs between
 these main functions of wood, how ontogenetic trends are linked to
 differences in growth trajectories and shade tolerance among tree species
 and if wood properties are mainly controlled by tree age or by size. 3) In
 all species studied, vessel fraction, vessel size, theoretical hydraulic
 conductivity (Kh) and fibre wall thickness significantly increased with
 tree diameter. While the ray fraction also increased in all species except
 Neolitsea, axial parenchyma changed significantly only in Afzelia, the
 species with by far the largest axial parenchyma fraction. The average WD
 and Kh reflect the phenology, with deciduous and shade-intolerant Toona
 and Melia having low WD and high Kh, and shade-tolerant brevi-deciduous
 Chukrasia and evergreen Neolitsea having higher WD and low Kh. Deciduous
 Afzelia, however, had the lowest Kh and second-highest WD. The radial
 gradients in WD and Kh also reflect within-species differences in growth
 rates during ontogeny. 4) The relationship between WD and its underlying
 anatomical components varied substantially among species. Modulating fibre
 wall thickness and vessel size enables growing trees to increase water
 transport capacity and mechanical strength at the same time. Across
 species, tree diameter had a stronger effect than age on all parameters
 except for fibres. 5) Given the very substantial within-tree size-related
 variation in wood traits, tree size is an essential parameter to include
 in comparative studies on the functional ecology of wood. Analyzing
 ontogenetic changes in wood can advance our understanding of the different
 ecological strategies of trees.
description: Radial trends in wood
 anatomy of five Thai tree speciesWood anatomy measured on
 cross-sections obtained from 5-mm increment cores sampled at breast
 height. Fractions are the proportion of the total cross secctional area
 occupied by the respective cell types or fibre walls. For Toona ciliata,
 the axial parenchyma and fibre fractions were pooled because the two cell
 types were often hard to distinguish.radial_variation_wood_anatomy.csv