cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7401560.v1
title: Dissolved organic matter chemistry and transport along an Arctic tundra hillslope

description: Data were collected from Imnavait Creek watershed, in northern Alaska. Lysimeters were installed in hillslope or riparian landscape positions, and within the organic soil horizon (12 cm deep) or at the mineral-permafrost interface (~50 cm deep). Pore waters from each lysimeter (n=36) were measured for structural (1H-NMR) and fluorescence (EEMS) characteristics, as well as bulk chemistry (total dissolved carbon, nitrogen, phosphate). Potassium bromide was applied as a conservative tracer to estimate the velocity of water movement downslope (preferential flow) and down-valley (lateral flow).
DOI: 10.6084/m9.figshare.7400018
title: PARA UBICACION.xlsx

description: GPS coordinates of larva mosquitoes collected in in Mexico City
DOI: 10.7284/119933
title: Radiometer data collected during research cruise OC1404D using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7400417.v1
title: Friction & Permeability

description: raw data for frictional sliding and permeability data
DOI: 10.6084/m9.figshare.7399511
title: CarbonFlux_GRL

description: This dataset is presented in the paper submitted to Geophysical Research Letters: The decadal decline of CO2 emissions from the largest freshwater lake in China. This dataset includes all the measured and modelled data used in the paper. For the detailed data description, please refer to the paper.
DOI: 10.6084/m9.figshare.7400018.v2
title: PARA UBICACION.xlsx

description: GPS coordinates of larva mosquitoes collected in in Mexico City
DOI: 10.6084/m9.figshare.7399511.v1
title: CarbonFlux_GRL

description: This dataset is presented in the paper submitted to Geophysical Research Letters: The decadal decline of CO2 emissions from the largest freshwater lake in China. This dataset includes all the measured and modelled data used in the paper. For the detailed data description, please refer to the paper.
DOI: 10.6084/m9.figshare.7400018.v1
title: PARA UBICACION.xlsx

description: GPS coordinates of larva mosquitoes collected in in Mexico City
DOI: 10.7284/119934
title: Radiometer data collected during research cruise OC1404D using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399502
title: Deciphering seed dispersal decisions: Size, not tannin content, drives seed fate and survival in a tropical forest

description: All raw data and associated R analysis files (with detailed descriptions for use as comments embedded in R script) for MS entitled "Deciphering seed dispersal decisions: Size, not tannin content, drives seed fate and survival in a tropical forest"<br>
DOI: 10.7284/119935
title: Rain Gauge data collected during research cruise OC1404D using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399466
title: <i>Aspergillus niger</i> CSR3 regulates plant endogenous hormones and secondary metabolites by producing gibberellins and indoleacetic acid

description: In this study, an endophytic fungus, <i>Aspergillus niger</i> CSR3, was isolated from <i>Cannabis sativa</i>. The culture filtrate (CF) was initially screened for growth-promoting activities such as the presence of siderophores, phosphate solubilization, and the production of indole acetic acid (IAA) and gibberellins and was further assayed for its ability to promote the growth of mutant <i>waito</i>-C rice. Nearly all plant growth attributes examined (root–shoot length, biomass, and chlorophyll content) were significantly enhanced by treatment with CSR3. This growth promotion action was due to the presence of various types of gibberellins (GAs) and IAA in the endophyte CF. Moreover, the presence of GA pathway genes (<i>P50-1</i>, <i>P450-3, P450-4</i>, <i>ggs2</i>, and <i>des</i>) was confirmed by means of semi-quantitative RT-PCR. Finally, the application of CSR3 spore suspension with uniconazole and yucasin on maize seedlings revealed that, similar to exogenous IAA and GA<sub>3</sub>, CSR3 has the potential to alleviate the inhibitory effect of these inhibitors.
DOI: 10.7284/119926
title: Singlebeam Echosounder data collected during research cruise OC1404D using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399403
title: Slides for NBIS Tools for Reproducible Research (Gothenburg, November 2018)

description: Slides for NBIS Tools for Reproducible Research (Gothenburg, November 2018)
DOI: 10.7284/119928
title: Singlebeam Echosounder data collected during research cruise OC1404D using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399328
title: Data for "Large-Scale Micron-Order 3D Surface Correlative Chemical Imaging of Ancient Roman Concrete"

description: Raman spectra files and EDS data used in paper. Also includes some images included in figures. See paper for methodologies.
DOI: 10.6084/m9.figshare.7399466.v2
title: <i>Aspergillus niger</i> CSR3 regulates plant endogenous hormones and secondary metabolites by producing gibberellins and indoleacetic acid

description: In this study, an endophytic fungus, <i>Aspergillus niger</i> CSR3, was isolated from <i>Cannabis sativa</i>. The culture filtrate (CF) was initially screened for growth-promoting activities such as the presence of siderophores, phosphate solubilization, and the production of indole acetic acid (IAA) and gibberellins and was further assayed for its ability to promote the growth of mutant <i>waito</i>-C rice. Nearly all plant growth attributes examined (root–shoot length, biomass, and chlorophyll content) were significantly enhanced by treatment with CSR3. This growth promotion action was due to the presence of various types of gibberellins (GAs) and IAA in the endophyte CF. Moreover, the presence of GA pathway genes (<i>P50-1</i>, <i>P450-3, P450-4</i>, <i>ggs2</i>, and <i>des</i>) was confirmed by means of semi-quantitative RT-PCR. Finally, the application of CSR3 spore suspension with uniconazole and yucasin on maize seedlings revealed that, similar to exogenous IAA and GA<sub>3</sub>, CSR3 has the potential to alleviate the inhibitory effect of these inhibitors.
DOI: 10.6084/m9.figshare.7399403.v1
title: Slides for NBIS Tools for Reproducible Research (Gothenburg, November 2018)

description: Slides for NBIS Tools for Reproducible Research (Gothenburg, November 2018)
DOI: 10.6084/m9.figshare.7399466.v1
title: <i>Aspergillus niger</i> CSR3 regulates plant endogenous hormones and secondary metabolites by producing gibberellins and indoleacetic acid

description: In this study, an endophytic fungus, <i>Aspergillus niger</i> CSR3, was isolated from <i>Cannabis sativa</i>. The culture filtrate (CF) was initially screened for growth-promoting activities such as the presence of siderophores, phosphate solubilization, and the production of indole acetic acid (IAA) and gibberellins and was further assayed for its ability to promote the growth of mutant <i>waito</i>-C rice. Nearly all plant growth attributes examined (root–shoot length, biomass, and chlorophyll content) were significantly enhanced by treatment with CSR3. This growth promotion action was due to the presence of various types of gibberellins (GAs) and IAA in the endophyte CF. Moreover, the presence of GA pathway genes (<i>P50-1</i>, <i>P450-3, P450-4</i>, <i>ggs2</i>, and <i>des</i>) was confirmed by means of semi-quantitative RT-PCR. Finally, the application of CSR3 spore suspension with uniconazole and yucasin on maize seedlings revealed that, similar to exogenous IAA and GA<sub>3</sub>, CSR3 has the potential to alleviate the inhibitory effect of these inhibitors.
DOI: 10.7284/119936
title: Speedlog data collected during research cruise OC1404D using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399295
title: Correlations among citation count and readers for Associate Professor

description: Correlation coefficients, p-values and standard errors computed between citation count and reader count for associate professor.
DOI: 10.6084/m9.figshare.7399295.v1
title: Correlations among citation count and readers for Associate Professor

description: Correlation coefficients, p-values and standard errors computed between citation count and reader count for associate professor.
DOI: 10.7284/119924
title: Water Temperature data collected during research cruise OC1404D using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399235
title: Supplementary Material for: The Role of Intestinal Fatty Acid Binding Proteins in Protecting Cells from Fatty Acid Induced Impairment of Mitochondrial Dynamics and Apoptosis

description: <b><i>Background/Aims:</i></b> The conformation, folding and lipid binding properties of the intestinal fatty acid binding proteins (IFABP) have been extensively investigated. In contrast, the functional aspects of these proteins are not understood and matter of debates. In this study, we aim to address the deleterious effects of FA overload on cellular components, particularly mitochondria; and how IFABP helps in combating this stress by restoring the mitochondrial dynamics. <b><i>Methods:</i></b> In the present study the functional aspect of IFABP under conditions of lipid stress was studied by a string of extensive in-cell studies; flow cytometry by fluorescence-activated cell sorting (FACS), confocal imaging, western blotting and quantitative real time PCR. We deployed ectopic expression of IFABP in rescuing cells under the condition of lipid stress. Again in order to unveil the mechanistic insights of functional traits, we arrayed extensive computational approaches by means of studying centrality calculations along with protein-protein association and ligand induced cluster dissociation. While addressing its functional importance, we used FCS and in-silico computational analyses, to show the structural distribution and the underlying mechanism of IFABP’s action. <b><i>Results:</i></b> Ectopic expression of IFABP in HeLa cells has been found to rescue mitochondrial morphological dynamics and restore membrane potential, partially preventing apoptotic damage induced by the increased FAs. These findings have been further validated in the functionally relevant intestinal Caco-2 cells, where the native expression of IFABP protects mitochondrial morphology from abrogation induced by FA overload. However, this native level expression is insufficient to protect against apoptotic cell death, which is rescued, at least partially in cells overexpressing IFABP. In addition, shRNA mediated IFABP knockdown in Caco-2 cells compromises mitochondrial dynamics and switches on intrinsic apoptotic pathways under FA-induced metabolic stress. <b><i>Conclusion:</i></b> To summarize, the present study implicates functional significance of IFABP in controlling ligand-induced damage in mitochondrial dynamics and apoptosis.
DOI: 10.7284/119937
title: Water Temperature data collected during research cruise OC1404D using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119938
title: Transmissometer data collected during research cruise OC1404D using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399193
title: table & figure& dataset.docx

description: <b>Patient’s preference on Neurosurgeon’s Attire and Appearance</b>
DOI: 10.7284/119939
title: TSG (Thermosalinograph) data collected during research cruise OC1404D using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399163
title: Supplementary Material for: Sexual Behavior: From Hormonal Regulation to Endocrine Disruption

description: Sexual behavior constitutes a chain of behavioral responses beginning with courtship and leading to copulation. These responses, which are exhibited in a sexually dimorphic manner by the two partners, are tightly regulated by sex steroid hormones as early as the perinatal period. Hormonal changes or exposure to exogenous factors exhibiting hormone-mimetic activities, such as endocrine disrupting compounds (EDC), can therefore interfere with their expression. Here we review the experimental studies in rodents performed to address the potential effects of exposure to EDC on sexual behavior and underlying mechanisms, with particular attention to molecules with estrogenic and/or anti-androgenic activities.
DOI: 10.6084/m9.figshare.7399193.v1
title: table & figure& dataset.docx

description: <b>Patient’s preference on Neurosurgeon’s Attire and Appearance</b>
DOI: 10.7284/119957
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1405A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119944
title: Anemometer data collected during research cruise OC1405A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119946
title: Fluorometer data collected during research cruise OC1405A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117341
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1405A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119947
title: Gyrocompass data collected during research cruise OC1405A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399094
title: SHUE Database

description: In urban areas, where population growth is greatest, lies the greatest opportunity to influence development with the goal of enhancing population health within the agenda of the UN Sustainable Development Goals (SDGs). This report describes the development of the Sustainable Healthy Urban Environments (SHUE) database, which provides data to analyse the characteristics of a globally-representative sample of cities. Datasets with data from global cities on the themes of geography, demography & health, environment, housing, energy, transport, and policy, were collated from sources including existing databases of urban characteristics and global land cover and GIS data. A set of 250 cities were randomly sampled from a global universe of cities, stratified by population size, gross national income (GNI), and Bailey’s ecoregion, used here as a proxy for climate, with selection weighted by the availability of data within these existing datasets. A further 59 cities were added to the dataset as interesting comparators based on expert opinion. The available data was aggregated for the cities, and new data were added from various sources, including GIS analyses of spatial and remote-sensed information, and through internet searches, the methods of which are described here. The resultant SHUE database has been used as the basis of a number of publications, and can now be found hosted online for other researchers to use.
DOI: 10.7284/119949
title: Hygrometer data collected during research cruise OC1405A using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7399079
title: Ficken & Wright JVS 2018 Exp2 Root Traits.csv

description: This file includes data on the measured root traits of plant individuals of two focal species (chosen to represent a resource conservative and a resource acquisitive species, in Exp 1) exposed to different nitrogen treatment levels (control, press, pulse) and competitive environments (paired with a conspecific, paired with a heterospecific).
DOI: 10.6084/m9.figshare.7399037
title: Ficken & Wright JVS 2018 Exp 1 Plant traits.csv

description: These data include root functional trait measurements for four woody understory species inhabiting longleaf pine forests.
DOI: 10.6084/m9.figshare.7399073
title: Ficken & Wright 2018 JVS Exp2 Biomass

description: This file includes data on the biomass resprouting of two focal species (chosen to represent a resource acquisitive and a resource conservative species, from Exp1) exposed to different nitrogen fertilization treatments (control, press, pulse) and to different competitive environments (paired with a conspecific, paired with a heterospecific).
DOI: 10.6084/m9.figshare.7399079.v1
title: Ficken & Wright JVS 2018 Exp2 Root Traits.csv

description: This file includes data on the measured root traits of plant individuals of two focal species (chosen to represent a resource conservative and a resource acquisitive species, in Exp 1) exposed to different nitrogen treatment levels (control, press, pulse) and competitive environments (paired with a conspecific, paired with a heterospecific).
DOI: 10.6084/m9.figshare.7398980
title: Ficken & Wright JVS 2018 Exp1 15N assimilation.csv

description: These data include a time series of 15N assimilation in plant leaf biomass (0-288 hours after label addition) for four species of understory woody plant inhabiting longleaf pine forests.
DOI: 10.6084/m9.figshare.7398980.v1
title: Ficken & Wright JVS 2018 Exp1 15N assimilation.csv

description: These data include a time series of 15N assimilation in plant leaf biomass (0-288 hours after label addition) for four species of understory woody plant inhabiting longleaf pine forests.
DOI: 10.6084/m9.figshare.7399073.v1
title: Ficken & Wright 2018 JVS Exp2 Biomass

description: This file includes data on the biomass resprouting of two focal species (chosen to represent a resource acquisitive and a resource conservative species, from Exp1) exposed to different nitrogen fertilization treatments (control, press, pulse) and to different competitive environments (paired with a conspecific, paired with a heterospecific).
DOI: 10.7284/119948
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1405A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398917
title: Sugar Transporter Protein 1 (STP1) contributes to regulation of the genes involved in shoot branching via carbon partitioning in <i>Arabidopsis</i>

description: We previously demonstrated that alterations in sugar partitioning affect the expression of genes involved in hormone biosynthesis and responses, including BRANCHED1 (BRC1), resulting in enhanced shoot branching in transgenic <i>Arabidopsis</i> plants overexpressing cyanobacterial fructose-1,6-bisphosphatase-II in the cytosol (AcF). The exogenous treatment of wild-type <i>Arabidopsis</i> plants with sugars showed the same transcript characteristics, indicating that sugars act as a signal for branching. We also found that the reductions induced in <i>BRC1</i> expression levels in wild-type plants by the sugar treatments were suppressed in the knockout mutant of sugar transporter 1 (<i>stp1-1)</i>. Intracellular sugar contents were similar in <i>stp1-1</i> and wild-type plants following the sugar treatments, suggesting that STP1 acts as a factor for the regulation of shoot branching depending on extracellular sugar contents. <b>Abbreviations:</b> BRC1: BRABCHED1; FBP/SBPase: fructose-1,6-/sedoheptulose-1,7-bisphosphatase; Glc: glucose; HXK: hexokinase; SnRK1.1/AKIN10: SNF1-RELATED PROTEIN KINASE 1.1; Suc: sucrose; SnRK1: sucrose non-fermenting 1-related protein kinase; STP: sugar transporter protein Sugar Transporter Protein 1 (STP1) contributes to regulation of shoot branching.
DOI: 10.7284/119950
title: Radiometer data collected during research cruise OC1405A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7398833
title: Defining requirements for an Augmented Reality system to overcome the challenges of creating and using design representations in co-design sessions

description: Within co-design sessions involving designers and non-designers, the type and characteristics of the design representations employed is known to impact the performance of such sessions in terms of idea generation, idea evaluation and communication. This study captures the challenges practitioners face in creating and using design representations for co-design sessions and goes on to investigate the potential of Spatial Augmented Reality (SAR) to overcome those challenges. The advantages of SAR in this application are that, multiple concepts can be represented using one physical model, concepts can be modified live during the session, and additional equipment (such as head mounted displays or handheld devices) is not required, thus eliminating any possible interference with the natural interactions between participants. Interviews with design practitioners and trials with a prototype SAR system are used to identify the key challenges faced by practitioners in their current use of design representations, and to capture the technology requirements for a SAR system for use in co-design sessions. These findings can inform the work of technology developers and researchers working on systems to support co-design sessions.
DOI: 10.7284/119951
title: Radiometer data collected during research cruise OC1405A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21942/uva.7398812.v1
title: CCC Manual (2005-2014)

description: CCCmanual is a series of HTML webpages containing a manual for the editors of Cinema Context for online data entry. Cinema Context is a historical data collection for the history of film culture, in particular the screening and distribution of films in the Netherlands. The data collection and the website are managed by the Library of the University of Amsterdam. NWO has been the main financier of the instrument. In 2005, project leader Karel Dibbets developed a detailed online manual for the team entering and editing data. Since the development of a new Cinema Context Editor in 2017, this manual was effectively outdated (as are the data model diagrams that are included in it). It is useful to archive the old manual, because it helps understanding the process of data entry and handling that was in place before 2014.