cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19336346.v4
title: A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms

description: Satellite-retrieved solar-induced chlorophyll fluorescence (SIF) can be a valuable proxy for photosynthesis. TROPOspheric Monitoring Instrument (TROPOMI) on the Copernicus Sentinel-5P mission enables significant improvements in measuring SIF, but the short temporal coverage of the data records has limited its applications in long-term studies. This dataset uses machine learning to reconstruct TROPOMI SIF (RTSIF) for 2001-2020 with a spatial resolution of 0.05° and a temporal resolution of 8 days. Our machine learning model has high accuracy on the training and testing data (R<sup>2</sup> = 0.907, regression slope = 1.001). The RTSIF dataset is in good agreement with the original TROPOMI SIF, and its accuracy is further validated against tower-based SIF. The RTSIF dataset is also compared with other satellite-derived SIF (GOME-2 SIF and OCO-2 SIF). Comparing RTSIF with Gross Primary Production (GPP) illustrates the potential of RTSIF for estimating carbon fluxes. We anticipate that this new dataset will be valuable in assessing long-term terrestrial photosynthesis and constraining the global carbon budget and associated water fluxes.
DOI: 10.6084/m9.figshare.28399301.v1
title: DataSet_Art12

description: Violence against Women (VAW) is a major public health which prevention urges. The Bystander approach is considered a promising framework for VAW prevention. Governments and NGOs have employed mass-media campaigns as their primary methods to enhance communities' responsibilities towards IPVAW. However, for campaigns to produce significant changes they need to be theory-driven to transform. No information has been found to his regard. The aim of this study was to analyse the predictive capacity of 6 relevant factors identified in previous studies on the willingness to perform an active helping behaviour for three VAW scenarios (Intimate Partner Violence against Women, Sexual Work Harassment and Street Sexual Harassment).
DOI: 10.60893/figshare.jcp.27331656.v1
title: Supplemental Data

description: Supplemental structural, optical, photochemical, kinetic modeling, and DFT characterization
DOI: 10.6084/m9.figshare.14828397.v1
title: Supplememntary data S1-8

description: Supplementary data S1-S8 to support the manuscript entitled:<br> "Providing humans with practical, best practice handling guidelines during human-cat interactions increases cats’ affiliative behaviour and reduces aggression and signs of conflict" <br>Authors: Camilla Haywood<sup>1</sup> , Lucia Ripari<sup>2</sup><sup> </sup>, Jo Puzzo<sup>1</sup>, Rachel Foreman-Worsley<sup>2</sup> and Lauren R Finka<sup>2,1</sup>*<br> <sup>1</sup> Battersea Dogs and Cat Home, Battersea, London, UK <sup>2</sup> Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Southwell, UK<br> *Correspondence: lauren.finka@ntu.ac.uk <br> Supplementary data S1 - Participant questionnaire Supplementary data S2 - Excel work book containing the following data sheets: Cat demographics and L-CAT scores, coding ethogram, cat ratings by participants, human handling ratings, behaviour data for ICC2 calculations, ICC2 results, all behaviour measure data, dataset for glm analysis, human demographics Supplementary data S3 - Participant instructions for control condition Supplementary data S4 - Educational video - CAT guidelines Supplementary data S5 - Participant instructions for intervention condition Supplementary data S6 - CAT guidelines poster Supplementary data S7 - Participant cat rating sheet
DOI: 10.17632/n5x8wdn2t3
title: Dataset/ThesisK&J/B25

description: This research used a systematic literature review approach to assess the implementation of AI agents in addressing mental health issues. The review followed the PRISMA (Preferred Reporting Items for Systematic Reviews) procedure to identify, assess, and analyze academic literature related to the use of AI agents and Large Language Models (LLM) in mental health services, specifically in emotional support and personalization based on multi-modal emotion recognition.
DOI: 10.6084/m9.figshare.22644274.v1
title: Supplementary Material for: Formyl peptide receptor type 2 (FPR2) deficiency in myeloid cells amplifies sepsis-induced cardiac dysfunction

description: Using a global formyl-peptide receptor (Fpr)2 knockout mouse colony, we have reported the modulatory properties of this pro-resolving receptor in polymicrobial sepsis. Herein, we have used a humanized FPR2 (hFPR2) mouse colony bearing an intact or a selective receptor deficiency in myeloid cells to dwell on the cellular mechanisms. hFPR2 mice and myeloid cell-specific hFPR2 KO (abbreviated to KO) mice were subjected to cecal ligation and puncture (CLP)-induced polymicrobial sepsis. Compared with hFPR2 mice, CLP caused exacerbated cardiac dysfunction (assessed by echocardiography), worsened clinical outcome and impaired bacteria clearance in KO mice. This pathological scenario was paralleled by increased recruitment of pro-inflammatory monocytes and reduced M2-like macrophages within the KO hearts. In peritoneal exudates of KO mice, we quantified increased neutrophil and MHC II+ macrophage numbers, but decreased monocyte/macrophage and MHC II- macrophage recruitment. hFPR2 up-regulation was absent in myeloid cells and local production of lipoxin A4 was reduced in septic KO mice. Administration of the FPR2 agonist Annexin A1 (AnxA1) improved cardiac function in hFPR2 septic mice, but had limited beneficial effects in KO mice, in which the FPR2 ligand failed to polarize macrophages towards an MHC II- phenotype. In conclusion, FPR2 deficiency in myeloid cells exacerbates cardiac dysfunction and worsens clinical outcome in polymicrobial sepsis. The improvement of cardiac function and the host immune response by AnxA1 is more effective in hFPR2 competent septic mice.
DOI: 10.6084/m9.figshare.24602349.v1
title: The Supplementary Dataset of Systemwide energy return on investment in a sustainable transition towards net zero power systems.

description: This dataset covers CED analysis of power technologies, including power to e-methane. It is part of the article titled "Systemwide energy return on invested in a sustainable transition towards net zero power systems", Nature Communications, DOI: 10.1038/s41467-023-44232-9
DOI: 10.6084/m9.figshare.5124826.v1
title: Supplementary Material for: Validation of FLAIR Hyperintense Lesions as Imaging Biomarkers to Predict the Outcome of Acute Stroke after Intra-Arterial Thrombolysis following Intravenous Tissue Plasminogen Activator

description: <b><i>Background:</i></b> Intravenous tissue plasminogen activator (tPA) given within 4.5 h of symptom onset is accepted as the standard treatment of ischemic stroke. Persistent occlusion of cerebral arteries despite intravenous thrombolysis and unremitting neurologic deficits lead us to consider additional intra-arterial approaches. The aim of this study was to elucidate the potential of fluid-attenuated inversion recovery (FLAIR) MRI performed during or immediately after intravenous thrombolysis for predicting clinical outcomes of subsequent intra-arterial thrombolysis. <b><i>Methods:</i></b> With a prospective stroke registry database of patients hospitalized in our institution from January 2004 to February 2010, we identified ischemic stroke patients with the following conditions: (1) presentation within 2.5 h of onset, (2) treated with intravenous tPA based on brain CT, (3) persistent occlusion on subsequent MRI/MR angiography, including a FLAIR sequence, and (4) eventually treated with intra-arterial thrombolysis. Demographic, clinical and laboratory findings including initial National Institutes of Health Stroke Scale (NIHSS), follow-up NIHSS at the 7th day or discharge, modified Rankin scale (mRS) score at 3 months, and symptomatic hemorrhagic transformation were captured. FLAIR images were reviewed by 2 investigators blinded to clinical information independently and dichotomized into the absence and presence of FLAIR change within the diffusion-restriction lesions. <b><i>Results:</i></b> Of the 57 patients who met these conditions, FLAIR-hyperintense lesions (FHL) were observed in 32 (56.1%). The FHL-negative group was 69.1 ± 12.1 years old on average and the FHL-positive group 67.3 ± 11.0 years old. In both groups, hypertension was the most common vascular risk factor, cardioembolic stroke was the most common subtype, and distal middle cerebral artery was the most common site of occlusion. The incidence of symptomatic hemorrhagic transformation was 4.0% in the FHL-negative group and 9.4% in the FHL-positive group (p = 0.62). NIHSS scores of 0-1 on the 7th day of hospitalization or at discharge were observed in 36% of the FHL-negative group and in 9.4% of the FHL-positive group; mRS scores of 0-1 at 3 months was 32% in the FHL-negative group and 21% in the FHL-positive group. An ordinal logistic regression analysis showed that the presence of FHL was associated with higher 7-day NIHSS scores (adjusted for relevant covariates) but not with higher 3-month mRS scores. <b><i>Conclusions:</i></b> This study suggests that the FHL might be used as imaging biomarker to predict outcomes for additional intra-arterial thrombolysis in patients treated with intravenous tPA.
DOI: 10.6084/m9.figshare.5242033.v1
title: Erratum: Major Depression and Psoriasis: A Psychodermatological Phenomenon

description: <b><i>Objective:</i></b> The aim of this paper was to highlight the mechanisms involved and the relationship between depression and psoriasis. <b><i>Method:</i></b> A comprehensive literature search was performed in various databases, and finally 88 studies were deemed relevant. <b><i>Results:</i></b> A significant link was found between depression and psoriasis, primarily through immune mechanisms related but not limited to the actions of inflammatory cytokines such as tumor necrosis factor-α, interleukin 1 (IL-1), IL-2, IL-10, interferon-γ, IL-1β, prostaglandin E2, C-reactive protein, IL-6, and IL-8. <b><i>Conclusion:</i></b> Various neuroimmunological studies point towards the notion that depression and psoriasis are associated with each other. Melatonin has also been found to be associated with both conditions. A possibility exists that both conditions can cause each other due to the possible bidirectional relationship of psoriasis and major depression. However, if this is the case, then why all depressed patients fail to develop psoriasis and why all psoriatic patients fail to develop depression remains a question unanswered. We believe that future studies will unmask this mystery.
DOI: 10.6084/m9.figshare.5716033.v4
title: recount.rpkm.RData

description: This is the output of a pipeline that trains a Pathway-Level Information ExtractoR (PLIER) model on recount2 data (RPKM). See: https://github.com/greenelab/rheum-plier-data/tree/978c37938383ff7adcadacfcbc35931ce5e62b17<br><br>It was run in a Docker container. See the Github repository for more information. <br><br>Below, we include information about the scripts used to generate each item using the relative path from the repo top directory.<br><br>It contains:<br>* The rse-gene files downloaded from the recount bioconductor package (recount_experiments_rse-gene.tar.gz, output of recount2/1-get_all_recount_dataset.R)<br>* The RPKM normalized recount data (recount_rpkm.RDS, output of recount2/2-prep_recount_for_plier.R)<br>* The recount data processed for use with PLIER, the pathway data prepped for use with PLIER, and the k parameter for use with PLIER (recount_data_prep_PLIER.RDS, output of recount2/2-prep_recount_for_plier.R)<br>* The PLIER model itself (recount_PLIER_model.RDS, output of recount2/3-run_recount_plier.R)<br><br>If you use any of this data, please be sure to cite:<br><br>Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B and Leek JT (2017). "Reproducible RNA-seq analysis using recount2." Nature Biotechnology. doi: 10.1038/nbt.3838<br><br>And the PLIER preprint, if you use the PLIER model:<br><br>Mao W, Harmann B, Sealfon SC, Zaslavsky E, and Chikina M (2017). "Pathway-Level Information ExtractoR (PLIER) for gene expression data." bioRxiv. doi: 10.1101/116061<br><br><br>
DOI: 10.6084/m9.figshare.13350524.v1
title: Raw nucleotide assemblies for: Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans

description: SPAdes v13 assemblies for newly generated data in this study
DOI: 10.6084/m9.figshare.13363631.v1
title: Supplementary Material for: Psychogenic Seizure Imitating Narcolepsy

description: Psychogenic or functional neurological disorders (FND) often occur in the practice of a neurologist. Diagnosis of FND usually causes significant difficulties. Among FND, psychogenic non-epileptic seizures (PNES) comprise around 40% cases. Sometimes it is necessary to differentiate PNES from narcolepsy. We describe a 55-year-old man with frequent brief and sudden sleep-like attacks in combination with nocturnal sleep disturbance. During attacks he was unresponsive, snoring but maintained posture. He resisted passive eye opening but with rolling eyes. The patient was confused on waking. In the interictal period, there were FND signs including give-way weakness of the left hand, typical functional “leg-dragging” gait, mistake in the finger-to-nose test. Video-electroencephalogram monitoring did not detect specific epileptic activity or sleep pattern during the attacks. Polysomnography showed multiple waking episodes during the night, but no typical pattern of narcolepsy was found in the multiple sleep latency test. The patient had frequent urgent hospitalizations due to different diseases and numerous invasive procedures. Six month later, the patient obtained state related disability financial benefit, after which hospitalizations in various hospitals continued, and PNES became shorter and less pronounced.
DOI: 10.17632/3h74ktng2s
title: Dynamic Capabilities -Digital Innovation and Responsible Innovation

description: Data research: The effect of dynamic capabilities and digital innovation on competitiveness mediated by responsible innovation
DOI: 10.6084/m9.figshare.28856456.v1
title: HOFDiff

description: Datasets used by HOFDiff and model pretrain weights
DOI: 10.6084/m9.figshare.28944287.v1
title: DB_community_detection_2025.05.07.sav

description: The data in this database was used in a study where we used the community detection approach to complex networks analysis to analyze temperamental and executive functioning profiles of media multitaskers in early adolescence. It was submitted for publication in 2025.05.07 by the first author.
DOI: 10.6084/m9.figshare.27604974.v1
title: Raw Dataset and Analysis for the paper "Influence of serotonin on the long-term muscle contraction of the Kohnstamm phenomenon"

description: The provided data is supplementary to the paper "Influence of serotonin on the long-term muscle contraction of the Kohnstamm phenomenon" by Annika Schmidt, Tobias Meindl, Alin Albu-Schäffer, David W. Franklin, Philipp StratmannCorresponding author: annika.schmidt@dlr.de
DOI: 10.6084/m9.figshare.6169409.v1
title: SullivanetalMetabolomicsSourceData.xlsx

description: Metabolomics source data for Sullivan et al. "Aspartate is an endogenous metabolic limitation for tumour growth"
DOI: 10.6084/m9.figshare.12498062.v1
title: JVASP-12070 to JVASP-12868

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.21080914.v1
title: Supplementary Material for: Awareness of Antimicrobial Resistance: Surveillance among Visitors of a Tertiary Care Center, Riyadh, Saudi Arabia

description: <b><i>Introduction:</i></b> Antimicrobial resistance (AMR) is a worldwide issue that was declared by the World Health Organization as a high-priority issue. However, there is a lack of awareness about AMR noticed in our community. Therefore, this study aims to assess the knowledge of the community regarding AMR. <b><i>Methodology:</i></b> A validated 24-item questionnaire was administered to the visitors of the outpatient clinic pharmacy waiting area to investigate their awareness of antibiotic resistance. <b><i>Results:</i></b> 397 questionnaires were received and analyzed. The questionnaire included questions asking what antibiotic resistance is, how to use antibiotics properly, and for which infections antibiotics are used. The findings showed that 161 (40.55%) of the respondents were classified as having sufficient knowledge of AMR. Moreover, the results revealed that there was a significant association between gender and the level of knowledge where females showed a better knowledge of AMR than males. Age was also an influencing factor since respondents aged between 18 and 45 (31.49%) years proved to have higher knowledge. <b><i>Conclusion:</i></b> Our findings showed that awareness of AMR and the proper usage of antibiotics seems to be lacking among the general population. Educating the general population through the health care system and public campaigns could change the community’s perception of antimicrobial usage and, consequently, increase awareness of AMR.
DOI: 10.6084/m9.figshare.22115024.v5
title: The gene annoation data of chromosome-level silkie genome

description: The gene annoation data of chromosome-level silkie genome
DOI: 10.6084/m9.figshare.25699389.v1
title: skin metatranscriptomic annotations for pilot longitudinal cohort

description: Skin metatranscriptomic annotations for pilot longitudinal cohort,
DOI: 10.6084/m9.figshare.28328498.v1
title: Genome assembly data for HapA

description: Genome assembly data for HapA
DOI: 10.6084/m9.figshare.28930520.v1
title: AI KRegression

description: The single-axis Sample Entropy (X-axis) only slightly decreased from 0.095 ± 0.054 to 0.080 ± 0.048 (p = 0.025*), and the Y-axis also only decreased from 0.106 ± 0.046 to 0.090 ± 0.043 (p = 0.025*), indicating that the complexity changes in a single direction are limited. In contrast, the Pearson correlation of the dual-axis indicators dropped sharply from 0.049 ± 0.227 to –0.062 ± 0.201 (p = 0.002**) before and after fatigue, with a larger change and statistical significance, fully reflecting the collapse of coordination between the horizontal and vertical axes caused by visual fatigue. Further examining the nonlinear interaction coupling indicators, NLID(X|Y) decreased from 0.736 ± 0.185 to 0.654 ± 0.182 (p = 0.013*), and NLID(Y|X) decreased from 0.747 ± 0.151 to 0.698 ± 0.155 (p = 0.030*), clearly revealing the significant weakening of the nonlinear driving relationship between the two axes under fatigue state. Compared with the uniaxial entropy value, these biaxial synchronization and coupling metrics have obvious advantages in sensitivity and significance, which fully verifies the importance of introducing biaxial information for visual fatigue detection. In addition, the appendix provides complete statistical results under each dimension (m=1–5) so that readers can deeply examine the sensitivity and stability of different parameter combinations for fatigue identification indicators.
DOI: 10.6084/m9.figshare.29144912.v1
title: Combining machine learning methods with feature selection for predicting concrete basic creep

description: The file contains 127 sets of basic creep data with 11 variables and 2383 data points. In addition, two traditional creep calculation models and three machine learning models are shown to calculate and predict creep.
DOI: 10.6084/m9.figshare.3513917.v1
title: Appendix B. Characterizing beta-binomial observation error in population data.

description: Characterizing beta-binomial observation error in population data.
DOI: 10.6084/m9.figshare.27931142.v1
title: Cabozantinib-phospholipid complex for enhanced solubility, bioavailability, and reduced toxicity in liver cancer

description: To enhance the therapeutic potential of Cabozantinib (CBZ), a tyrosine kinase inhibitor with limited water solubility, low bioavailability, and high toxicity, by developing a Cabozantinib-Phospholipid Complex (CBZ-PLS). CBZ-PLS was formulated using solvent evaporation with a Box-Behnken design and characterized using various techniques to confirm molecular interactions. Solubility, in vitro release, pharmacokinetics, and toxicity were evaluated. Cytotoxic effects on HepG2 cell lines were also assessed. CBZ-PLS exhibited a 126-fold increase in solubility and enhanced CBZ release in vitro. Pharmacokinetic studies on Wistar rats demonstrated a 1.58-fold increase in bioavailability, while acute toxicity studies confirmed biocompatibility. CBZ-PLS showed superior cytotoxicity, apoptosis induction, migration inhibition, increased ROS generation, and greater DNA fragmentation in HepG2 cells. The complex also maintained stability over 6 months. CBZ-PLS significantly improves the solubility, bioavailability, and therapeutic efficacy of CBZ against liver cancer, presenting a promising approach for more effective liver cancer treatment.
DOI: 10.6084/m9.figshare.9252968.v1
title: 120_gene-alignments

description: Single gene alignment in fasta format
DOI: 10.17632/4fhwb3kjkn
title: A convolutional neural network technique for online tracking of the radius evolution of levitating evaporating microdroplets of pure liquids, liquid mixtures and suspensions

description: In this study, we use a convolutional neural network ( which we trained on theoretically generated Mie scattering patterns, grouped into classes encompassing consecutively small ranges of radii) to classify corresponding experimentally recorded sequences of patterns, enabling the tracking of the radius evolution of evaporating microdroplets of pure liquids, liquid-liquid mixtures, and suspensions. The zip file contains 3 folders: "Convolutional Neural Networks" which contains the MATLAB script for the untrained convolutional neural network architecture, (t7g24d_Modified.m), the trained network (Stage1_Network_Pure_DEG.mat) and its corresponding class information. The class information is a ".mat" file containing 3 sub-vectors labelled "class" (class labels), "Range" (class radii ranges), and "Radius" (class average radii). Finally, the folder contains a MATLAB script "Classify_images.m" for classifying the experimental images sequentially. The 2 other folders contain images (generated for 3 classes and experimental images.
The full length article can be accessed from Journal of Quantitative Spectroscopy and Radiative Transfer: https://doi.org/10.1016/j.jqsrt.2025.109533
Or from arxiv : https://doi.org/10.48550/arXiv.2410.08857
DOI: 10.6084/m9.figshare.1160510.v1
title: Dataset for the paper Preschoolers and the Endowment Effect

description: Endowment effect in children
DOI: 10.6084/m9.figshare.1568767.v1
title: Development of gene-based markers for the identification of wheat-rye translocations possessing 1RS

description: Wheat-rye translocations carry valuable genes for pest resistance; this has led to their incorporation into wheat varieties. To develop gene-based 1RS specific markers, expressed sequence tags (ESTs) mapped to the short arm of wheat homoeologous group 1 were downloaded from a public database. ESTs and mature transcript sequences of nine species from the Poaceae family were BLASTed to perform comparative analysis. ESTs selected using the BLAST tool were used for primer design. The target sequences of primers were expected to exist in most species of the Poaceae family, and therefore, cross-species primers were designed. Amplicons obtained using these cross-species primer pairs were sequenced in the 1BL.1RS near-isolines (‘OK91G113’ [1BL.1RS] and ‘OK91G114’ [non-translocation]), ‘Chinese Spring’ and ‘Petkus’ rye (1RS donor for 1BL.1RS translocations). Through in silico analysis and primer validation, we were able to develop four 1RS-specific markers and these markers were confirmed with analysis involving 15 1RS translocation lines.
DOI: 10.6084/m9.figshare.20226267.v1
title: Normalized Remote Sensing Agricultural GPP Monsoon 2004

description: agricultural gross primary productivity