cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5736md2s
title: MassIVE MSV000095085 - Preventing escape and malfunction of recoded cells via tRNA changes
title: Engineering cells to perform precise functions and encode new-to-nature biochemistries is crucial to safeguarding and expanding living technologies. Cells with an engineered genetic code can inhibit the translation of horizontally transferred DNA (aka bioisolation) and incorporate multiple non-standard amino acids. This distinct property makes recoded cells promising and safe technologies; however, questions surrounding the role of evolutionary pressures on the longevity of a genetic-code-based bioisolation arise. In this study, we observed that a 61-codon Escherichia coli strain, lacking TCG/A (TCR) serine codons and their cognate tRNAs from the genome, can express antibiotic resistance genes with multiple TCR codons and escape at a rate that is orders of magnitude higher than expected. We show, for the first time, that this escape mechanism is a two-step process whereby initial mistranslation of TCR-containing antibiotic resistance genes enables recoded cells to survive long enough to acquire tRNA modifications or mutations that reinstate serine into TCR codons. We developed genetic code-sensitive kill switches that sense serine incorporation into TCR, thereby preventing escape and malfunction of a recoded cell even in the presence of antibiotic resistance genes while preserving incorporation of up to three non-standard amino acids. This work showcases how the genetic code can adapt to evolutionary pressures, and it lays the foundation for the controlled use of cells that encode multiple new-to-nature amino acids, with broad implications for the design, use, and biosafety of synthetic, recoded genomes for clinical and environmental applications in which physical containment is not sufficient.
DOI: 10.60712/si-id165042.1
title: StrainInfo SI-ID 165042.1

description: StrainInfo dataset 165042 about a strain of Corticium roseocarneum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165043.1
title: StrainInfo SI-ID 165043.1

description: StrainInfo dataset 165043 about a strain of Corticium roseocarneum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165115.1
title: StrainInfo SI-ID 165115.1

description: StrainInfo dataset 165115 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165116.1
title: StrainInfo SI-ID 165116.1

description: StrainInfo dataset 165116 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165117.1
title: StrainInfo SI-ID 165117.1

description: StrainInfo dataset 165117 about a strain of Eutypa tetragona. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165204.1
title: StrainInfo SI-ID 165204.1

description: StrainInfo dataset 165204 about a strain of Fusarium avenaceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165205.1
title: StrainInfo SI-ID 165205.1

description: StrainInfo dataset 165205 about a strain of Phialophora cinerescens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165206.1
title: StrainInfo SI-ID 165206.1

description: StrainInfo dataset 165206 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165044.1
title: StrainInfo SI-ID 165044.1

description: StrainInfo dataset 165044 about a strain of Dendrothele griseocana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165045.1
title: StrainInfo SI-ID 165045.1

description: StrainInfo dataset 165045 about a strain of Dendrothele nivosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.g2t844
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chesneya ferganensis Korsh."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081706-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id165046.1
title: StrainInfo SI-ID 165046.1

description: StrainInfo dataset 165046 about a strain of Leucoagaricus americanus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165047.1
title: StrainInfo SI-ID 165047.1

description: StrainInfo dataset 165047 about a strain of Mycorrhaphium adustum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165118.1
title: StrainInfo SI-ID 165118.1

description: StrainInfo dataset 165118 about a strain of Eutypa petrakii var. hederae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165119.1
title: StrainInfo SI-ID 165119.1

description: StrainInfo dataset 165119 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165120.1
title: StrainInfo SI-ID 165120.1

description: StrainInfo dataset 165120 about a strain of Hydnophlebia chrysorhiza. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165121.1
title: StrainInfo SI-ID 165121.1

description: StrainInfo dataset 165121 about a strain of Polyporus arcularius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165207.1
title: StrainInfo SI-ID 165207.1

description: StrainInfo dataset 165207 about a strain of Culicinomyces bisporalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165208.1
title: StrainInfo SI-ID 165208.1

description: StrainInfo dataset 165208 about a strain of Culicinomyces bisporalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165209.1
title: StrainInfo SI-ID 165209.1

description: StrainInfo dataset 165209 about a strain of Chondrostereum purpureum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165210.1
title: StrainInfo SI-ID 165210.1

description: StrainInfo dataset 165210 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165048.1
title: StrainInfo SI-ID 165048.1

description: StrainInfo dataset 165048 about a strain of Postia amara. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165049.1
title: StrainInfo SI-ID 165049.1

description: StrainInfo dataset 165049 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165122.1
title: StrainInfo SI-ID 165122.1

description: StrainInfo dataset 165122 about a strain of Neofavolus alveolaris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165123.1
title: StrainInfo SI-ID 165123.1

description: StrainInfo dataset 165123 about a strain of Polyporus pseudobetulinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165124.1
title: StrainInfo SI-ID 165124.1

description: StrainInfo dataset 165124 about a strain of Polyporus radicatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165125.1
title: StrainInfo SI-ID 165125.1

description: StrainInfo dataset 165125 about a strain of Pseudomerulius aureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165211.1
title: StrainInfo SI-ID 165211.1

description: StrainInfo dataset 165211 about a strain of Dendrothele microspora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165212.1
title: StrainInfo SI-ID 165212.1

description: StrainInfo dataset 165212 about a strain of Hohenbuehelia cyphelliformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165213.1
title: StrainInfo SI-ID 165213.1

description: StrainInfo dataset 165213 about a strain of Resupinatus striatulus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165214.1
title: StrainInfo SI-ID 165214.1

description: StrainInfo dataset 165214 about a strain of Vibrissea truncorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165050.1
title: StrainInfo SI-ID 165050.1

description: StrainInfo dataset 165050 about a strain of Pythium capillosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165051.1
title: StrainInfo SI-ID 165051.1

description: StrainInfo dataset 165051 about a strain of Pythium pachycaule. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165052.1
title: StrainInfo SI-ID 165052.1

description: StrainInfo dataset 165052 about a strain of Pythium pachycaule. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165126.1
title: StrainInfo SI-ID 165126.1

description: StrainInfo dataset 165126 about a strain of Pycnoporellus fulgens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165127.1
title: StrainInfo SI-ID 165127.1

description: StrainInfo dataset 165127 about a strain of Rhodotus palmatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165128.1
title: StrainInfo SI-ID 165128.1

description: StrainInfo dataset 165128 about a strain of Strumella coryneoidea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165215.1
title: StrainInfo SI-ID 165215.1

description: StrainInfo dataset 165215 about a strain of Heteroradulum deglubens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165216.1
title: StrainInfo SI-ID 165216.1

description: StrainInfo dataset 165216 about a strain of Heteroradulum deglubens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165217.1
title: StrainInfo SI-ID 165217.1

description: StrainInfo dataset 165217 about a strain of Ascodesmis microscopica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165053.1
title: StrainInfo SI-ID 165053.1

description: StrainInfo dataset 165053 about a strain of Globisporangium acrogynum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165054.1
title: StrainInfo SI-ID 165054.1

description: StrainInfo dataset 165054 about a strain of Pythium acanthicum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165055.1
title: StrainInfo SI-ID 165055.1

description: StrainInfo dataset 165055 about a strain of Pythium vanterpoolii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165056.1
title: StrainInfo SI-ID 165056.1

description: StrainInfo dataset 165056 about a strain of Pythium angustatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165129.1
title: StrainInfo SI-ID 165129.1

description: StrainInfo dataset 165129 about a strain of Vararia gallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165130.1
title: StrainInfo SI-ID 165130.1

description: StrainInfo dataset 165130 about a strain of Ceratorhiza oryzae-sativae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165131.1
title: StrainInfo SI-ID 165131.1

description: StrainInfo dataset 165131 about a strain of Coniophora puteana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165132.1
title: StrainInfo SI-ID 165132.1

description: StrainInfo dataset 165132 about a strain of Cyphellophora laciniata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165218.1
title: StrainInfo SI-ID 165218.1

description: StrainInfo dataset 165218 about a strain of Eleutherascus peruvianus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165219.1
title: StrainInfo SI-ID 165219.1

description: StrainInfo dataset 165219 about a strain of Neurospora indica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165220.1
title: StrainInfo SI-ID 165220.1

description: StrainInfo dataset 165220 about a strain of Pseudohamigera striata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165221.1
title: StrainInfo SI-ID 165221.1

description: StrainInfo dataset 165221 about a strain of Leiothecium ellipsoideum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165057.1
title: StrainInfo SI-ID 165057.1

description: StrainInfo dataset 165057 about a strain of Pythium inflatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165058.1
title: StrainInfo SI-ID 165058.1

description: StrainInfo dataset 165058 about a strain of Pythium aquatile. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165059.1
title: StrainInfo SI-ID 165059.1

description: StrainInfo dataset 165059 about a strain of Pythium periilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165060.1
title: StrainInfo SI-ID 165060.1

description: StrainInfo dataset 165060 about a strain of Pythium periilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.x2cyfg
title: Occurrence Download

description: A dataset containing 15193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crupina vulgaris (Pers.) Cass.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15193 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081705-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id165133.1
title: StrainInfo SI-ID 165133.1

description: StrainInfo dataset 165133 about a strain of Epicoccum sorghinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165134.1
title: StrainInfo SI-ID 165134.1

description: StrainInfo dataset 165134 about a strain of Phaeoacremonium minimum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id165135.1
title: StrainInfo SI-ID 165135.1

description: StrainInfo dataset 165135 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.