cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q803147
title: Data from: Lithobieae and Eriocnemeae: two new neotropical tribes of Melastomataceae

description: Lithobium is a monotypic genus in the Melastomataceae restricted to
 southeastern Brazil. Most previous students of the family have placed
 these diminutive herbs into the Microlicieae, but some classifications
 have assigned the genus to the Sonerileae or Bertolonieae. Eriocnema is
 also a monotypic genus that has been included in the Bertolonieae,
 Sonerileae, and also Microlicieae. Ochthephilus, yet another monotypic
 genus, was assigned to the Merianieae, but lack of fruits and seeds, and a
 paucity of collections, have made it difficult to correctly place in a
 phylogenetic context. In this phylogenetic analysis, 91 species
 representing 73 genera from across the Melastomataceae, including 24 of
 the 27 genera putatively closely related to Lithobium, Eriocnema,
 Ochthephilus, and Physeterostemon were sampled for seven molecular
 markers, i.e., the nuclear ribosomal external transcribed spacer region
 (ETS) and internal transcribed spacer region (ITS), the plastid accD–psaI
 spacer region, ndhF, psbK–psbL, rbcL, and rpl16. Lithobium is on an
 isolated branch and is not a member of any other clade, thus a new tribe,
 Lithobieae, is proposed to accommodate it. In this analysis, Eriocnema and
 Ochthephilus form a clade including Physeterostemon that is sister to the
 Miconieae and separate from tribes that they have been associated with in
 historical classifications, thus another new tribe, Eriocnemeae, is
 proposed.
description: Lithobieae_Eriocnemeae_DNA_MatrixThis is a nexus file with concatenated DNA sequences for 91 species x 7 markers (ETS + ITS + accD + ndhF + psbK + rbcL + rpl16).LITHOB~1.NEX
DOI: 10.5061/dryad.cr54775
title: Data from: Six co-occurring conifer species in northern Idaho exhibit a continuum of hydraulic strategies during an extreme drought year

description: As growing seasons in the northwestern USA lengthen, on track with climate
 predictions, the mixed conifer forests that dominate this region will
 experience extended seasonal drought conditions. The year of 2015, which
 had the most extreme drought for the area on record, offered a potential
 analog of future conditions. During this period, we measured the daily
 courses of water potential and gas exchange as well as the hydraulic
 conductivity and vulnerability to embolism of six dominant native conifer
 species, Abies grandis, Larix occidentalis, Pinus ponderosa, Pinus
 monticola, Pseudotsuga menziesii, and Thuja occidentalis, to determine
 their responses to 5 months of record low precipitation. The deep
 ash-capped soils of the region allowed gas exchange to continue without
 significant evidence of water stress for almost two months after the last
 rainfall event. Midday water potentials never fell below -2.2 MPa in the
 evergreen species and -2.7 MPa in the one deciduous species. Branch xylem
 was resistant to embolism, with P50 values ranging from -3.3 to -7.0 MPa.
 Root xylem, however, was more vulnerable, with P50 values from -1.3 to
 -4.6 MPa. With predawn water potentials as low as -1.3 MPa, the two Pinus
 species likely experienced declines in root hydraulic conductivity.
 Stomatal conductance of all six species was significantly responsive to
 vapor pressure only in the dry months (August-October), with no response
 evident in the wet months (June-July). While there were similarities among
 species, they exhibited a continuum of isohydry and safety margins.
 Despite the severity of this drought, all species were able to continue
 photosynthesis until mid-October, likely due to the mediating effects of
 the meter-deep, ash-capped silty-loam soils with large water storage
 capacity. Areas with these soil types, which are characteristic of much of
 the Northwest USA, could serve as refugia under drier and warmer future
 conditions.
description: Baker_et_al_2019_dataDiurnal, continuous, specific conductivity, and meteorological data
DOI: 10.5061/dryad.40jf1bg
title: Inbreeding and disease avoidance in a free‐ranging koala population

description: Habitat destruction and fragmentation are increasing globally, forcing
 surviving species into small, isolated populations. Isolated populations
 typically experience heightened inbreeding risk, and associated inbreeding
 depression and population decline; although individuals in these
 populations may mitigate these risks through inbreeding avoidance
 strategies. For koalas, as dietary specialists already under threat in the
 northern parts of their range, increased habitat fragmentation and
 associated inbreeding costs are of great conservation concern. Koalas are
 known to display passive inbreeding avoidance through sex-biased
 dispersal, although population isolation will reduce dispersal pathways.
 We tested whether free-ranging koalas display active inbreeding avoidance
 behaviours. We used VHF tracking data, parentage reconstruction, and
 veterinary examination results to test whether female koalas make mate
 choices based on [1] relatedness, and [2] chlamydial disease in available
 mates. We found no evidence that female koalas based their mate choice on
 the relative relatedness of available mates. In fact, as the relatedness
 of potential mates increases, so did inbreeding events. We also found no
 evidence that female koalas based their mate choice on the chlamydial
 disease status of available mates. The absence of active inbreeding
 avoidance mechanisms in koalas is concerning from a conservation
 perspective, as small, isolated populations may be at even higher risk of
 inbreeding depression than expected. At-risk koala populations may require
 urgent conservation interventions to augment gene flow and reduce
 inbreeding risks. Similarly, if koalas are not avoiding mating with
 individuals with chlamydial disease, populations may be at higher risk
 from disease than anticipated, further impacting population viability.
description: Koala
 Genotypes De-identified genotypes
 for 442 koalas. 5007 SNP loci resulting from filtering as in published
 journal article. Koala_Genotypes_5007SNPs.csv Koala VHF tracking data Twice-weekly VHF tracking data for 294 koalas. Coordinates have been transformed to de-identify localities but spatial relationships maintained. VHF_tracking_data.csv Data for linear modelling Data used for liner modelling. Please see README. Linear_modelling_data.csv  
description: See published article for methodology.
DOI: 10.5061/dryad.nn2v75c
title: Data from: Facile fabrication of Mn2+ doped ZnO photocatalysts by electrospinning

description: In this study, we report a high efficiency photocatalyst synthesized by
 Mn2+ doped ZnO nanofibers (NFs) fabricated by facile electrospinning and a
 following annealing process, in which Mn2+ successes incorporate to ZnO
 NFs lattice without changing any morphology and crystalline structure of
 ZnO. The photodegradation properties were studied for ZnO doping with
 different concentrations of Mn2+ (5, 10, 15 and 50 at.%). The 50 %
 Mn2+-doped ZnO NFs owns excellent active photocatalytic performance
 (quantum efficiency up to 7.57 %) compared to pure ZnO (0.16 %) under
 visible light and can be considered as an efficient visible-light
 photocatalyst material. We systematically analyzed the catalytic mechanism
 and showed that the enhancement belongs to the Mn doping effect and the
 phase junction between MnO and ZnO. The dominant mechanism of Mn doping
 leads to the presence of impurity levels in the band gap of ZnO, narrowing
 the optical band gap of ZnO. In addition, doped Mn2+ ions can be used as
 electron traps that inhibit the recombination process and promote
 electron-hole pair separation. Overall, this paper provides a facile
 approach to fabricate a highly efficient visible-light photocatalyst using
 controlled annealing.
description: The data contains all
 the original data, including the original SEM, TEM images, XRD data,
 Absorbance data for band gap calculation and for photocatalytic
 performance measurement.
DOI: 10.5061/dryad.6p58d0k
title: Data from: Congruence and conflict in the higher-level phylogenetics of squamate reptiles: an expanded phylogenomic perspective

description: Genome-scale data have the potential to clarify phylogenetic relationships
 across the tree of life, but have also revealed extensive gene tree
 conflict. This seeming paradox, whereby larger datasets both increase
 statistical confidence and uncover significant discordance, suggests that
 understanding sources of conflict is important for accurate reconstruction
 of evolutionary history. We explore this paradox in squamate reptiles, the
 vertebrate clade comprising lizards, snakes, and amphisbaenians. We
 collected an average of 5103 loci for 91 species of squamates that span
 higher-level diversity within the clade, which we augmented with publicly
 available sequences for an additional 17 taxa. Using a locus-by-locus
 approach, we evaluated support for alternative topologies at 17
 contentious nodes in the phylogeny. We identified shared properties of
 conflicting loci, finding that rate and compositional heterogeneity drives
 discordance between gene trees and species tree and that conflicting loci
 rarely overlap across contentious nodes. Finally, by comparing our tests
 of nodal conflict to previous phylogenomic studies, we confidently resolve
 nine of the 17 problematic nodes. We suggest this locus-by-locus and
 node-by-node approach can be used to build consensus on which topological
 resolutions remain uncertain in phylogenomic studies of other contentious
 groups.
description: Included are:
 A zipped file of all the trimmed alignments used for
 tree inference A zipped file of all the gene trees
 inferred from these trimmed alignments trees inferred
 using RAxML nodes are annotated with SH-like
 values Supplementary
 Information Supplementary Tables
 & Figures for Manuscript
DOI: 10.5061/dryad.rf0g0md
title: Data from: Computed tomography shows high fracture prevalence among physically active forager-horticulturalists with high fertility

description: Modern humans have more fragile skeletons than other hominins, which may
 result from physical inactivity. Here we test whether reproductive effort
 also compromises bone strength, by measuring using computed tomography
 thoracic vertebral bone mineral density (BMD) and fracture prevalence
 among physically active Tsimane forager-horticulturalists. Earlier onset
 of reproduction and shorter interbirth intervals are associated with
 reduced BMD for women. Tsimane BMD is lower versus Americans, but only for
 women, contrary to simple predictions relying on inactivity to explain
 skeletal fragility. Minimal BMD differences exist between Tsimane and
 American men, suggesting that systemic factors other than fertility (e.g.
 diet) do not easily explain Tsimane women's lower BMD. Tsimane
 fracture prevalence is also higher versus Americans. Lower BMD increases
 Tsimane fracture risk, but only for women, suggesting a role of weak bone
 in women's fracture etiology. Our results highlight the role of
 sex-specific mechanisms underlying skeletal fragility that operate long
 before menopause.
description: Datafiledata for dryad.csv
DOI: 10.5061/dryad.2b1g52j
title: Data from: Diet variability among insular populations of Podarcis lizards reveals diverse strategies to face resource-limited environments

description: Access to resources is a dynamic and multi-causal process that determines
 the success and survival of a population. It is therefore often
 challenging to disentangle the factors affecting ecological traits like
 diet. Insular habitats provide a good opportunity to study how variation
 in diet originates, in particular in populations of mesopredators such as
 lizards. Indeed, high levels of population density associated with low
 food abundance and low predation are selection pressures typically
 observed on islands. In the present study, the diet of eighteen insular
 populations of two closely related species of lacertid lizards (Podarcis
 sicula and Podarcis melisellensis) was assessed. Our results reveal that
 despite dietary variability among populations, diet taxonomic diversity is
 not impacted by island area. In contrast, however, diet disparity metrics,
 based on the variability in the physical (hardness) and behavioral
 (evasiveness) properties of ingested food items, are correlated with
 island size. These findings suggest that an increase in intraspecific
 competition for access to resources may induce shifts in functional
 components of the diet. Additionally, the two species differed in the
 relation between diet disparity and island area suggesting that different
 strategies exist to deal with low food abundance in these two species.
 Finally, sexual dimorphism in diet and head dimensions is not greater on
 smaller islands, in contrast to our predictions.
description: Online data Podarcis
 diet
DOI: 10.5061/dryad.h90097n
title: Data from: Post-operative follow-up for selected diffuse low-grade gliomas with WHO grade III/IV foci

description: Objective: Diffuse low-grade gliomas (DLGG) are defined by a continuous
 growth and an almost unavoidable malignant transformation. Foci of
 malignant glioma can be found within DLGG samples obtained from surgical
 resections. As the medical management of patients is classically based on
 the higher tumor grade, an immediate adjuvant treatment is usually
 proposed. To determine whether postponing the medical treatment in
 selected patients is feasible, we conducted a single-center retrospective
 study. Methods: Single-center retrospective analysis of a consecutive
 series of DLGG managed with this conservative strategy. Inclusion criteria
 were: at least one focus of malignant tumor (grade III-IV, WHO 2016), no
 previous chemotherapy or radiotherapy, no less than a subtotal resection
 of the FLAIR tumor volume, no intention of treating with immediate
 adjuvant therapy, minimum two years of follow-up. The time interval to the
 following oncological medical treatment was analyzed, as well as the
 functional and survival results. Results: 45 patients met the inclusion
 criteria (median age 36.5, median time interval from diagnosis: 7.3
 months). Most tumors (86.7%) were IDH-mutant and 1p19q intact (60.0%); 10
 presented with grade IV foci. With a median follow-up of 6.3 years, 75.5%
 of patients received a subsequent medical treatment, after a median time
 of 3.7 years since surgery. At the time of analysis, 9 patients (20.0%)
 had died (5-years and 7-years survival rates: 95.2% and 67.0%). Most
 surviving patients were still active professionally, without seizures.
 Conclusions: Postponing the medical treatment in DLGG with foci of
 malignant tumor following total or subtotal resection should be considered
 in selected patients.
description: Supplementary Table
 1Supplementary Table
 2
DOI: 10.5061/dryad.c73080n
title: Data from: How relatedness between mates influences reproductive success: an experimental analysis of self-fertilization and biparental inbreeding in a marine bryozoan

description: Kin associations increase the potential for inbreeding. The potential for
 inbreeding does not, however, make inbreeding inevitable. Numerous factors
 influence whether inbreeding preference, avoidance, or tolerance evolves,
 and, in hermaphrodites where both self-fertilization and biparental
 inbreeding are possible, it remains particularly difficult to predict how
 selection acts on the overall inbreeding strategy, and to distinguish the
 type of inbreeding when making inferences from genetic markers. Therefore,
 we undertook an empirical analysis on an understudied type of mating
 system (spermcast mating in the marine bryozoan, Bugula neritina) that
 provides numerous opportunities for inbreeding preference, avoidance, and
 tolerance. We created experimental crosses, containing three generations
 from two populations to estimate how parental reproductive success varies
 across parental relatedness, ranging from self, siblings, and non-siblings
 from within the same population. We found that the production of viable
 selfed offspring was extremely rare (only one colony produced three selfed
 offspring), and biparental inbreeding more common. Paternity analysis
 using 16 microsatellite markers confirmed outcrossing. The production of
 juveniles was lower for sib mating compared to non-sib mating. We found
 little evidence for consistent inbreeding, in terms of non-random mating,
 in adult samples collected from three populations, using multiple
 population genetic inferences. Our results suggest several testable
 hypotheses that potentially explain the overall mating and dispersal
 strategy in this species, including early inbreeding depression,
 inbreeding avoidance through cryptic mate choice, and differential
 dispersal distances of sperm and larvae.
description: Data for figure 2 and
 3These are the data
 presented in figure 2 and 3 of the paperData for figure
 4These are the data
 presented in figure 4 of the paperFigure 2 R
 codeThis is the R code used
 to make figure 2 in the paperFigure
 2.RFigure 3 R
 codeThis is the R code used
 to make figure 3 in the paperFigure
 3.RFigure 4 R
 codeThis is the R code used
 to make figure 4 in the paperFigure
 4.R
DOI: 10.5061/dryad.hv4k73n
title: Data from: Chloroplast primers for clade-wide phylogenetic studies of Thalictrum (Ranunculaceae)

description: Premise Chloroplast primers were developed for phylogenetic and
 comparative studies in Thalictrum (Ranunculaceae).
 Methods and Results We assembled and annotated the complete plastome
 sequence of T. thalictroides by combining multiple whole
 genome sequencing libraries. Using transcriptome‐sequencing libraries, we
 also assembled a partial plastome of the related species T.
 hernandezii. From the newly assembled plastomes and one previously
 sequenced plastome, we designed and validated 28 primer pairs to target
 variable portions of the chloroplast genome in Thalictrum.
 Furthermore, we tested the validated primers in 62 species
 of Thalictrum. The total alignment length of the 28 regions was
 15,268 bp with 2443 variable sites and 92% character occupancy.
 Conclusions The newly developed chloroplast primer pairs improve the
 phylogenetic resolution (bootstrap support and tree certainty)
 in Thalictum and will be a useful resource for future
 phylogenetic and evolutionary studies for species in the genus and in
 close relatives in Thalictroideae.
description: Data from: Chloroplast
 Primers for Clade-Wide Phylogenetic Studies of Thalictrum
 (Ranunculaceae)This package contains
 the demultiplexed Fluigdigm chloroplast reads of the 78 samples used in
 this study. Also, it includes all individual and concatenated alignments,
 as well as the alignments and trees from the phylogenetic analyses from
 the paper.Data_from_Morales-Briones_etl_al_APPS.zip
DOI: 10.5061/dryad.9776725
title: Data from: Discovery of a new ant species of the elusive termitophilous genus Metapone in Singapore (Hymenoptera: Formicidae: Myrmicinae), with first detailed description of male genitalia of the genus

description: A new species of the rare ant genus Metapone – Metapone murphyi – is
 described based on aged museum material: a single nest series (workers,
 queens and males) collected from a decayed coconut (tree) stump on Pulau
 Sakra – previously an offshore island south of mainland
 Singapore.  Workers can be distinguished from other named
 congeners mainly by the following characters: 1) subpetiolar lamella
 subrectangular; 2) short subpetiolar edge and roundly obtuse subpetiolar
 angle; 3) outer margin of posterior subpetiolar face forming a continuous,
 U-shaped, translucent, laminate carina; 4) subtrapezoidal petiole in
 dorsal view with extended blunt tooth-like posterolateral corners.
 Detailed description and illustrations of the male genitalia are given for
 the first time in the genus. The key to Asian species of Metapone is
 updated to include the new species.
description: Image plates in high
 resolutionhigh res figs for
 Dryad.zip
DOI: 10.5061/dryad.6ps168j
title: Data from: Wild samango monkeys, Cercopithecus mitis, balance risk and opportunity to interact with novel objects in village gardens

description: Research suggests that wild animals in urban areas exhibit heightened
 behavioral flexibility when they encounter novel human-made objects, but
 most such studies compared responses in urban populations with those from
 disjunct populations in less disturbed environments. We therefore know
 little about intrapopulation variation in cognitive or behavioral
 flexibility under different conditions of anthropogenic exposure. Here, we
 investigate object exploration and behavioral flexibility in a single
 group of samango monkeys (Cercopithecus mitis) in an environment where
 individuals forage in both gardens and natural forest. Over two months, we
 presented monkeys with novel, human-made objects in both natural and
 disturbed areas, varying the position of objects in trees to represent
 exposed or safer foraging zones. We video-recorded and analyzed
 interactions with these novel objects, assessing interaction times (an
 indicator of persistence), exploratory diversity (or motor diversity), and
 the occurrence of foraging innovations. Results from 67 interactions (29
 in natural habitats and 38 in disturbed) indicate that samango monkeys
 exhibited a spatially complex response to novel objects: in contrast to
 other species, exploration diversity decreased significantly in
 anthropogenic environments, even as persistence remained largely static
 across contexts. Monkeys also exhibited foraging innovations by pulling on
 strings to bring objects closer. This may reduce exposure to danger, as
 string-pulling was most prevalent in the highest risk condition (ground
 level in human gardens). Significant intrapopulation variation in
 behavioral flexibility suggests that samango monkeys adjust the expression
 of problem-solving behaviors in relation to the degree of human
 disturbance in their immediate environment.
description: Samango neophilia
 dataData on series of
 neophilia experiments with novel objects in gardens and forest area of
 Hogsback, South Africa. Subjects were wild samango monkeys interacting
 with toys in trees, set at different heights, representing varying degrees
 of perceived risk. Data include interaction time, exploration diversity,
 and string-pulling behaviour. Latency to approach was not possible to
 determine.Samango Supplementary
 Data.csv
DOI: 10.15468/dl.ajssrz
title: Occurrence Download

description: A dataset containing 890757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Butterfly distribution records for the UK from Butterfly Conservation, up to 2019",
 "TaxonKey is Hesperiidae",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 890757 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001892-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18393534
title: Oral History Interview - Maria Visitación Guede Vila

description: In this extensive oral history interview, Maria Visitación Guede Vila recounts a lifetime of devotion to Santa Mariña de Augas Santas, interweaving personal biography, family memory, illness narratives, miraculous experiences, and ritual practices. She reflects on childhood, work, marriage, motherhood, caretaking of the church keys, pilgrimage customs, offerings, sacred water, the Hornos, the Santa da Pedra, and changes in religious life over the 20th century. The interview offers a rich testimony of lived religion, gendered devotion, and community memory in rural Galicia.