cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6826605
title: Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5202_5191

description: We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration &gt; 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy &lt; 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.
DOI: 10.5281/zenodo.7409989
title: Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5202_5191

description: We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration &gt; 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy &lt; 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.
DOI: 10.6084/m9.figshare.21679529
title: Fig1_raw data.xlsx

description: <em><strong>Ips typographus </strong></em><strong>uses volatile cues from spruce bark inoculated with </strong><em><strong>G. penicillata (Gp)</strong></em><strong> to detect this symbiotic fungus.</strong>
DOI: 10.6084/m9.figshare.21679529.v1
title: Fig1_raw data.xlsx

description: <em><strong>Ips typographus </strong></em><strong>uses volatile cues from spruce bark inoculated with </strong><em><strong>G. penicillata (Gp)</strong></em><strong> to detect this symbiotic fungus.</strong>
DOI: 10.6084/m9.figshare.21679538
title: Fig 2ACD+Table S2_raw data.xlsx

description: <strong>Growth of </strong><em><strong>Ips typographus</strong></em><strong> symbiotic fungi on spruce bark induces increased emission of oxygenated monoterpenes</strong>
DOI: 10.6084/m9.figshare.21679544
title: Fig-2B

description: <strong>Growth of </strong><em><strong>Ips typographus</strong></em><strong> symbiotic fungi on spruce bark induces increased emission of oxygenated monoterpenes</strong>
DOI: 10.6084/m9.figshare.21679544.v1
title: Fig-2B

description: <strong>Growth of </strong><em><strong>Ips typographus</strong></em><strong> symbiotic fungi on spruce bark induces increased emission of oxygenated monoterpenes</strong>
DOI: 10.6084/m9.figshare.21679538.v1
title: Fig 2ACD+Table S2_raw data.xlsx

description: <strong>Growth of </strong><em><strong>Ips typographus</strong></em><strong> symbiotic fungi on spruce bark induces increased emission of oxygenated monoterpenes</strong>
DOI: 10.25934/pr00006653.1
title: Available IPD datapackage for study 'A Multicenter Randomized Phase III Study to Compare the Combination Trastuzumab and Capecitabine, With or Without Pertuzumab, in Patients With HER2-Positive Metastatic Breast Cancer That Have Progressed After One Line of Trastuzumab-Based Therapy in the Metastatic Setting (PHEREXA)'

description: This randomized, two-arm study evaluated the efficacy and safety of a combination of trastuzumab and capecitabine with or without pertuzumab in patients with human epidermal growth factor receptor 2 (HER2)-positive metastatic breast cancer. The study population consisted of female patients, whose disease had progressed during or following previous trastuzumab therapy for metastatic disease. All patients in Arm A and Arm B received trastuzumab (8 mg/kg iv as loading dose and then 6 mg/kg iv every 3 weeks thereafter) and capecitabine oral twice daily for 14 days every 3 weeks (1250 mg/m2 twice daily in Arm A and 1000 mg/m2 twice daily in Arm B). In addition, patients in Arm B received pertuzumab (840 mg iv as loading dose and then 420 mg iv thereafter) every 3 weeks. Study treatment continued until disease progression or unacceptable toxicity.
DOI: 10.5281/zenodo.7326933
title: Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)

description: <strong>Background:</strong> Although microbial communities of insects from larval to adult stage have been increasingly investigated in recent years, little is still known about the diversity and composition of egg-associated microbiomes. In this study, we used high-throughput amplicon sequencing and qPCR to get a better understanding of the microbiome of insect eggs and how they are established using the Southern green stinkbug <em>Nezara viridula </em>(L.) (Hemiptera: Pentatomidae) as study object. First, in order to determine the bacterial community composition, egg masses from two natural populations in Belgium and Italy were examined. Subsequently, microbial community establishment was assessed by studying stinkbug eggs of different ages obtained from laboratory strains (unlaid eggs collected from the ovaries, eggs less than 24 hours old, and eggs collected four days after oviposition). Both the external and internal egg-associated microbiome were analyzed by investigating egg washes and surface-sterilized washed eggs, respectively. <strong>Results:</strong> Eggs from the ovaries were completely devoid of bacteria, indicating that egg-associated bacteria were deposited on the eggs during or after oviposition. Bacterial diversity of deposited eggs was very low, with on average 6.1 zOTUs in the external microbiome and 1.2 zOTUs in internal samples of egg masses collected from the field. Bacterial community composition and density did not change significantly over time, suggesting limited bacterial growth. A <em>Pantoea</em>-like symbiont previously found in the midgut of <em>N. viridula</em> was found in every sample and generally occurred at high relative and absolute densities, especially in the internal egg samples. Additionally, some eggs harbored a <em>Sodalis</em> symbiont, which has previously been found in the abdomen of several insects, but so far not in <em>N. viridula</em> populations. <strong>Conclusions:</strong> We conclude that the egg-associated bacterial microbiome of <em>N. viridula</em> is species-poor and dominated by a few symbionts, particularly the species-specific obligate <em>Pantoea</em>-like symbiont.
DOI: 10.5281/zenodo.7326932
title: Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)

description: <strong>Background:</strong> Although microbial communities of insects from larval to adult stage have been increasingly investigated in recent years, little is still known about the diversity and composition of egg-associated microbiomes. In this study, we used high-throughput amplicon sequencing and qPCR to get a better understanding of the microbiome of insect eggs and how they are established using the Southern green stinkbug <em>Nezara viridula </em>(L.) (Hemiptera: Pentatomidae) as study object. First, in order to determine the bacterial community composition, egg masses from two natural populations in Belgium and Italy were examined. Subsequently, microbial community establishment was assessed by studying stinkbug eggs of different ages obtained from laboratory strains (unlaid eggs collected from the ovaries, eggs less than 24 hours old, and eggs collected four days after oviposition). Both the external and internal egg-associated microbiome were analyzed by investigating egg washes and surface-sterilized washed eggs, respectively. <strong>Results:</strong> Eggs from the ovaries were completely devoid of bacteria, indicating that egg-associated bacteria were deposited on the eggs during or after oviposition. Bacterial diversity of deposited eggs was very low, with on average 6.1 zOTUs in the external microbiome and 1.2 zOTUs in internal samples of egg masses collected from the field. Bacterial community composition and density did not change significantly over time, suggesting limited bacterial growth. A <em>Pantoea</em>-like symbiont previously found in the midgut of <em>N. viridula</em> was found in every sample and generally occurred at high relative and absolute densities, especially in the internal egg samples. Additionally, some eggs harbored a <em>Sodalis</em> symbiont, which has previously been found in the abdomen of several insects, but so far not in <em>N. viridula</em> populations. <strong>Conclusions:</strong> We conclude that the egg-associated bacterial microbiome of <em>N. viridula</em> is species-poor and dominated by a few symbionts, particularly the species-specific obligate <em>Pantoea</em>-like symbiont.
DOI: 10.6084/m9.figshare.21688502
title: Data on riots, state electoral politics and socioeconomic indicators in India

description: The dataset contains district level data on riots, the results of state assembly elections, measures of political competetion (calculated at district level), census controls such as literacy rate, proportion of minorities, urbanization, population density etc, Gini Coeffecients and Unemployment rates; and State level per capita income, state development expenditure, police strength and population per police for the period 2008 to 2015 in India.
DOI: 10.6084/m9.figshare.21688502.v1
title: Data on riots, state electoral politics and socioeconomic indicators in India

description: The dataset contains district level data on riots, the results of state assembly elections, measures of political competetion (calculated at district level), census controls such as literacy rate, proportion of minorities, urbanization, population density etc, Gini Coeffecients and Unemployment rates; and State level per capita income, state development expenditure, police strength and population per police for the period 2008 to 2015 in India.
DOI: 10.6084/m9.figshare.21688049
title: Plant–soil feedbacks predict tree succession in boreal forests

description: The dataset contains four excel files, one with the information on the samples, and the remaining three with the OTU and taxonomy data for fungal, bacterial and oomycete communities.
DOI: 10.25934/pr00005596.3
title: Available IPD datapackage for study 'A Phase III, Randomized Open-Label Study to Compare the Pharmacokinetics, Efficacy, and Safety of Subcutaneous (SC) Trastuzumab With Intravenous (IV) Trastuzumab Administered in Women With HER2-Positive Early Breast Cancer (EBC)'

description: In this open-label multicenter trial, participants with operable or locally advanced breast cancer will be randomized to pre-operative treatment with 8 cycles of chemotherapy (4 cycles of docetaxel followed by 4 cycles of 5-fluorouracil, epirubicin, and cyclophosphamide) concurrent with either SC Herceptin or IV Herceptin. After surgery, participants will receive a further 10 cycles of SC or IV Herceptin as per randomization to complete 1 year of treatment. All cycles will be 21 days in length. After the end of study treatment, participants will be followed for safety and efficacy for up to 5 years or until disease recurrence, whichever is earlier.
DOI: 10.18112/openneuro.ds003891.v1.1.0
title: Somatosensory evoked potentials in the human spinal cord to mixed nerve stimulation
DOI: 10.18112/openneuro.ds003891.v1.2.0
title: Somatosensory evoked potentials in the human spinal cord to mixed nerve stimulation
DOI: 10.6084/m9.figshare.21644333
title: Figure 2

description: Figure 2 in Graphpad prism format
DOI: 10.6084/m9.figshare.21644333.v1
title: Figure 2

description: Figure 2 in Graphpad prism format
DOI: 10.6084/m9.figshare.19336853
title: Slow development of vocal sequences through ontogeny in wild chimpanzees - Data file

description: Article title: <strong>Slow development of vocal sequences through ontogeny in wild chimpanzees</strong> <br> Authors: Tatiana Bortolato, Roger Mundry, Roman M. Wittig, Cédric Girard-Buttoz & Catherine Crockford <br> <br> Data used to fit all the models presented in the article.
DOI: 10.6084/m9.figshare.19336853.v1
title: Development of vocal sequences: structural complexity and combinatorial potential, in wild chimpanzees - Data file

description: Article title: Development of vocal sequences: structural complexity and combinatorial potential, in wild chimpanzees (Pan troglodytes verus) <br> Authors: Tatiana Bortalato, Roger Mundry, Roman M. Wittig, Cédric Girard-Buttoz & Catherine Crockford <br> <br> Data used to fit all the models presented in the article.
DOI: 10.6084/m9.figshare.19336853.v2
title: Slow development of vocal sequences through ontogeny in wild chimpanzees - Data file

description: Article title: <strong>Slow development of vocal sequences through ontogeny in wild chimpanzees</strong> <br> Authors: Tatiana Bortolato, Roger Mundry, Roman M. Wittig, Cédric Girard-Buttoz & Catherine Crockford <br> <br> Data used to fit all the models presented in the article.
DOI: 10.6084/m9.figshare.21644336
title: Figure 3

description: Figure 3 in Graphpad prism format
DOI: 10.6084/m9.figshare.21644342
title: Figure 4a,e

description: Figure 4 a,e in Graphpad prism format
DOI: 10.6084/m9.figshare.21644342.v1
title: Figure 4a,e

description: Figure 4 a,e in Graphpad prism format
DOI: 10.6084/m9.figshare.21644345
title: Figure 4b,f

description: Figure 4b,f in Graphpad prism format
DOI: 10.6084/m9.figshare.21644345.v1
title: Figure 4b,f

description: Figure 4b,f in Graphpad prism format
DOI: 10.6084/m9.figshare.21644348
title: Figure 4g

description: Figure 4g in Graphpad prism format
DOI: 10.6084/m9.figshare.21644348.v1
title: Figure 4g

description: Figure 4g in Graphpad prism format
DOI: 10.6084/m9.figshare.21644351
title: Figure 4h

description: Figure 4h in Graphpad prism format
DOI: 10.6084/m9.figshare.21644351.v1
title: Figure 4h

description: Figure 4h in Graphpad prism format
DOI: 10.6084/m9.figshare.17129945
title: Dual-specificity RNA aptamers enable manipulation of target-specific O-GlcNAcylation and unveil functions of O-GlcNAc on β-catenin

description: This dataset includes the raw and processed data (except CUT&RUN and RNA Sequencing data available at GEO) for the paper "Dual-specificity RNA aptamers enable manipulation of target-specific O-GlcNAcylation and unveil functions of O-GlcNAc on β-catenin". Data are organized by the figures.
DOI: 10.6084/m9.figshare.17129945.v3
title: Using Dual-Specificity Aptamers to Regulate O-GlcNAcylation of a Single Protein

description: This dataset includes the raw and processed data (except CUT&RUN and RNA Sequencing data available at GEO) for the paper "Aptamers Increase O-GlcNAc on a Single Protein to Regulate Wnt Signaling". Data are organized by the figures.
DOI: 10.6084/m9.figshare.17129945.v4
title: Dual-specificity RNA aptamers enable manipulation of target-specific O-GlcNAcylation and unveil functions of O-GlcNAc on β-catenin

description: This dataset includes the raw and processed data (except CUT&RUN and RNA Sequencing data available at GEO) for the paper "Dual-specificity RNA aptamers enable manipulation of target-specific O-GlcNAcylation and unveil functions of O-GlcNAc on β-catenin". Data are organized by the figures.
DOI: 10.25573/data.10042466.v15
title: Barro Colorado Island, AVA tower_Precipitation

description: Barro Colorado Island, AVA tower.<br>Precipitation, electronic tipping bucket<br><br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042445.v16
title: Barro Colorado Island, AVA tower_Wind speed

description: Barro Colorado Island, AVA tower.Wind speed, electronic sensor, interval max/min/avg<br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042421.v16
title: Barro Colorado Island, AVA tower_Air Temperature

description: Barro Colorado Island, AVA tower.Air temperature, electronic sensor, interval max/min/avg<br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042448.v16
title: Barro Colorado Island, AVA tower_Relative Humdity

description: Barro Colorado Island, AVA tower.<br>Relative humidity, electronic sensor, interval max/min/avg<br><br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042439.v16
title: Barro Colorado Island, AVA tower_Solar Radiation, Pyranometer

description: Barro Colorado Island, AVA tower. <br>Two Sensors, North and South<br>Solar Radiation, Pyranometer, Interval max/min/avg<br><br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042454.v16
title: Barro Colorado Island, AVA tower_Wind direction

description: Barro Colorado Island, AVA tower.Mean vector, wind direction<br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25573/data.10042412.v16
title: Barro Colorado Island, AVA tower_Solar Radiation, PAR

description: Barro Colorado Island, AVA tower.Two Sensors: North and South<br>Photosynthetically Active Radiation (PAR), Interval max/min/avg<br><br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.6073/pasta/a579a3ae1dd50263b2efb0bc927d4b77
title: WSC - Leaf area index (LAI) at various points within Wibu field site, 2012-2014

description: Leaf area index (LAI) measurements collected at various points within the Wibu field site between 2012-2014. Measurements were collected approximately weekly from plant emergence until appr. 1 month past the onset of senescence. The Wibu field site is a commercial agricultural field, which grew corn in the 2012, 2013, and 2014 growing seasons; therefore, these are all LAI values for corn. See Zipper and Loheide (2014) Ag. For. Met. for more information about the field site and use of the LAI data.
DOI: 10.6084/m9.figshare.21688685
title: IREDFisher database

description: IREDFisher database
DOI: 10.6084/m9.figshare.21688685.v1
title: IREDFisher database

description: IREDFisher database
DOI: 10.6084/m9.figshare.21667763.v1
title: Consistency across multi-omics layers in a drug-perturbed gut microbial community

description: Pre-processed data used for generating figures of the paper.
DOI: 10.25934/pr00005748.4
title: Available IPD datapackage for study 'A Randomized, Multicenter, Phase III Open-label Study of the Efficacy and Safety of Trastuzumab MCC-DM1 vs. Capecitabine + Lapatinib in Patients With HER2-Positive Locally Advanced or Metastatic Breast Cancer Who Have Received Prior Trastuzumab-Based Therapy'

description: This is a Phase III, randomized, multicenter, international, 2-arm, open-label clinical trial designed to compare the safety and efficacy of trastuzumab emtansine (T-DM1) with that of capecitabine + lapatinib in participants with human epidermal growth factor receptor 2 (HER2)-positive locally advanced or metastatic breast cancer. Participants will be treated until disease progression (PD), unmanageable toxicity, or study termination. Once disease progression is reported, all participants will be followed for survival every 3 months until death, loss to follow-up, withdrawal of consent, or study termination.
DOI: 10.25934/pr00005737.1
title: Available IPD datapackage for study 'A Randomized, Multicenter, Phase ii Study of the Efficacy and Safety of Trastuzumab-MCC-DM1 vs. Trastuzumab (Herceptin®) and Docetaxel (Taxotere®) in Patients With Metastatic HER2-positive Breast Cancer Who Have Not Received Prior Chemotherapy for Metastatic Disease'

description: This was a Phase II, randomized, multicenter, international, 2-arm, open-label clinical trial designed to explore the efficacy and safety of trastuzumab emtansine (T-DM1) relative to the combination of trastuzumab and docetaxel in patients with human epidermal growth factor receptor 2 (HER2)-positive, unresectable, locally advanced breast cancer and/or metastatic breast cancer who have not received prior chemotherapy for metastatic disease.
DOI: 10.25934/pr00005736.1
title: Available IPD datapackage for study 'A Phase II, Single-Arm, Open-Label Study of Trastuzumab-Mcc-DM1 Administered Intravenously to Patients With HER2-Positive Metastatic Breast Cancer'

description: Study of trastuzumab emtansine (T-DM1) administered to patients with human epidermal growth factor receptor 2 (HER2)-positive metastatic breast cancer.
DOI: 10.5281/zenodo.7410302
title: neoarius_pectoralis_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.7410301
title: neoarius_pectoralis_decontaminated_gx.fasta.gz

description: .