cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/88z4g43b84
title: Antioxidant Capacity of Hydroponically Cultivated and Grafted Tomato Varieties

description: Heirloom tomato varieties are in demand by consumers due to high antioxidant levels. However, these varieties are difficult to produce and are prone to disease and low yield. To overcome these problems, heirloom tomatoes may be grafted onto disease-resistant rootstocks and cultivated in hydroponic systems. However, it is unknown if the antioxidant capacity of hydroponically grown tomatoes is affected by grafting. Heirloom (Black Krim and Green Zebra) and standard (Big Beef) varieties were grafted onto wild type (WT) or productive rootstocks (Arnold and Supernatural). Tomatoes were harvested at maturity, freeze-dried, ground into a powder, and stored at -20ºC until further analysis. Antioxidant capacity of methanol extracts was evaluated by the 2,2’-azino-di[3-ethylbenzthiazoline sulfonsyr]sulphonic acid (ABTS) and 2,2-diphenyl-1-picrylhydrazyl (DPPH) assays. For the ABTS assay, the antioxidant capacity was measured by incubating 10 uL tomato extract was with 95 uL 3.5 mM ABTS• for 30 s at room temperature, and the absorbance at 734 nm was measured spectrophotometrically (Spectra Max 250 Microplate Reader, Molecular Devices, San Jose, CA). Trolox was used as an antioxidant standard for calculations of trolox equivalents (TE; μmol/g tomato dry weight). The antioxidant capacity of Big Beef, Black Krim, and Green Zebra grafted onto WT, Arnold, and Supernatural was 12.18±0.82, 12.34±0.65, 12.26±0.79 (Big Beef), 12.35±0.83, 11.99±1.31, 11.60±1.54 (Black Krim), and 11.42±1.12, 11.76±1.93, 11.71±0.83 (Green Zebra; TE; mean±std), respectively. For the DPPH assay, 10 μM DPPH in 90% aqueous methanol was measured spectrophotometrically at 517 nm (Spectra Max 250 Microplate Reader, Molecular Devices, San Jose, CA) to ensure that the absorbance was between 0.510-0.540. To determine the antioxidant capacity, 10 uL tomato extract was mixed with 195 uL 10 μM DPPH in 90% aqueous methanol and incubated in the dark for 15 min. The decrease in absorbance at 517 nm was then measured. Trolox was used as an antioxidant standard for calculations of TE. The antioxidant capacity of Big Beef, Black Krim, and Green Zebra grafted onto WT, Arnold, and Supernatural was 7.88±0.72, 7.62±0.87, 7.99±0.68, (Big Beef), 7.59±0.78, 8.11±0.54, 7.70±0.88 (Black Krim), and 8.00±0.53, 7.66±0.78, 8.19±0.64 (Green Zebra; TE; mean±std). The results further showed that none of the tomato varieties exhibited statistically significantly different antioxidant capacity.
DOI: 10.17632/yx82w7cbr7
title: A long-term fleet renewal problem under uncertainty: a simulation-based optimization approach with the case study on a naval fleet renewal

description: This file includes input and output data sets for the scenario discovery and sensitivity analysis.
DOI: 10.3535/l7c-kjm-4g4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sqa-ke4-r70
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14958198.v1
title: BD study dataset_final.xlsx

description: The data are from individuals aged 18 and above who gave informed consent and were tested for SARS-CoV-2 in Kenya. They were enrolled consecutively between 31st January and 24th March 2021. The dataset includes participant unique identification, sex, age, symptom status, number of and duration of symptoms, date of specimen collection, results from rapid antigen test and RT-PCR, Ct value and RT-PCR platform used.
DOI: 10.6084/m9.figshare.21840687.v1
title: Alphafold_structures.tar.bz2

description: Alphafold structure prediction files
DOI: 10.6084/m9.figshare.26826466.v9
title: <b>Chromosome-scale </b><b>assemblies of three </b><b><i>Ormosia</i></b><b> species</b>

description: <b>Chromosome-scale </b><b>assemblies of three </b><b><i>Ormosia</i></b><b> species</b>
DOI: 10.6084/m9.figshare.6857954.v1
title: Synthesis and characterization of nanostructured TiO2 and TiO2/W thin films deposited by co-sputtering

description: ABSTRACT Nanostructured TiO2 and TiO2/W thin films were deposited on Corning glass substrates by RF and DC magnetron co-sputtering at room temperature, using three targets of TiO, Ti and W. After deposition, samples were subjected to an annealing treatment in air at 500 °C for 3 hrs. The effect of the annealing treatment and tungsten addition to the TiO2 matrix were studied by Raman spectroscopy and X-ray diffraction. Morphology and composition was studied with field emission scanning electron microscopy and optical characterization was made with UV-Vis spectroscopy. All the obtained samples presented an amorphous TiO2 phase; however, after the annealing treatment, a crystallization process from amorphous to anatase phase occurred with gain sizes between 15.6 and 18.3 nm, additionally, a small amount of rutile was also observable. The SEM images corroborated the XRD behavior, besides it was possible to calculate the thickness of the films which was greater for the W-doped films owing the extra power of the sputtering growth, and after the samples had the thermal treatment the thickness decreased due to a more organized structure. Finally, the UV-vis transmittance analysis revealed that the transmittance is higher in heat-treated films as compared to those without any thermal treatment; also, the TiO2 thin films showed a greater transmittance than the W doped TiO2 films, reaching 91%. The lack of transmittance in the non-thermal-treated films made it impossible to compute the band gap of the films; nevertheless, for the thermal-treated films the band gap had a minimal change to the classic TiO2 bang gap value, even for the W doped sample, providing them with the benefits of the tungsten within the same TiO2 structure due to a great homogenization on the structure.
DOI: 10.3535/dhe-17m-kry
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jyx-3bc-ayl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21941288.v1
title: Deidentified scores_EPA Impl Survey 1.xlsx

description: Deidentified raw scores of each item of the survey on Entrustable Professional Activities (EPA) by student groups and clinical educator groups from each discipline, who are first-time users of the EPAs. <br> Legends: CE, clinical educator; DNR, did not respond; ID, identification number; OT, occupational therapy; PT, physiotherapy
DOI: 10.6084/m9.figshare.28190954.v1
title: Customer Perception_Mobile stock_Trading.csv

description: The Data set contains primary feedback data from young self directed investors on stock trading mobile apps. The data contains 9 study variables, along with two target variables. One target variable is the consumer usage intention for current users. Another is user intention of potential, current non-users. The dataset is primarily used as a pilot study, collected from Greater Kolkata region, West Bengal, India.
DOI: 10.6084/m9.figshare.6066569.v1
title: Kirchhoff adjusted activity data of without-tap network

description: Power grid activity data of 'without tap' network version in CSV format. The unit is MWh and hourly time series data. The values are adjusted to make the total activity of all nodes almost zero. It includes detailed attributes of nodes.
DOI: 10.3535/fw4-73j-855
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hfr-g0r-9vv
title: Halysites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d253
title: Ex13R51 vGluT1-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.3535/1vc-gcj-ya3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q26-xgp-ve1
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.157060.v2
title: Experiment 4: perceived size of test and reference arrays with lines only present either within the interior of the elements or connecting the elements

description: In experiment 4a the first five rows of data indicate the proportion of times participants perceived an unbound test array as being larger than a fixed unbound reference array. The second five rows of indicate the proportion of times participants perceived an array with a line connecting the local elements as being larger than a fixed unbound reference array. Each proportion was calculated from 20 trials.<br>In experiment 4b the first five rows of data indicate the proportion of times participants perceived an unbound test array as being larger than a fixed unbound reference array. The second five rows of indicate the proportion of times participants perceived an array with a line intersecting only the interiors of the elements as being larger than a fixed unbound reference array. Each proportion was calculated from 20 trials.
DOI: 10.6084/m9.figshare.26047660.v1
title: <i>Xanthomonas bundabergensis </i>sp. nov., <i>Xanthomonas medicagae </i>sp. nov., and <i>Xanthomonas tesorieroii </i>sp. nov.: three non-pathogenic members of Group 1 <i>Xanthomonas</i>

description: We report three novel <i>Xanthomonas </i>species detected in Australia on strawberry and alfalfa plants. These files are being shared so that these species can be rapidly identified using MALDI-TOF MS.
DOI: 10.17632/d53b53x3vt
title: Epitranscriptomic rRNA fingerprinting reveals tissue-of-origin and tumor-specific signatures. Milenkovic et al

description: Microscopy images of WT and Snord90 KO NPCs and neurons.
DOI: 10.3535/0pa-yfz-42a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pz0-jp8-jk7
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.4464026
title: Koranic Science, a Copy of Kashshâf [IO Islamic 563]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 563 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 53 here with further notations and hyperlinks].



53.


563. Size 14 in. by 71/2 in.; foll. 796. Twenty-nine lines in a page.


Another copy of the Kashshâf. Well written, by Burhân b. Ḥâmid. Ornamented and gilt. Some glosses.
DOI: 10.5281/zenodo.4464027
title: Koranic Science, a Copy of Kashshâf [IO Islamic 563]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 563 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 53 here with further notations and hyperlinks].



53.


563. Size 14 in. by 71/2 in.; foll. 796. Twenty-nine lines in a page.


Another copy of the Kashshâf. Well written, by Burhân b. Ḥâmid. Ornamented and gilt. Some glosses.
DOI: 10.6084/m9.figshare.1456130.v1
title: Tilburg University | PhD records without on-line PhD thesis publications | @ 7/6/2015

description: Via The Tilburg University Research Portal.
DOI: 10.6084/m9.figshare.27160482.v1
title: An epigenetic human cytomegalovirus infection score predicts viremia risk in seropositive lung transplant recipients

description: Cytomegalovirus (CMV) infection and reactivation in solid organ transplant (SOT) recipients increases the risk of viremia, graft failure and death. Clinical studies of CMV serostatus indicate that donor positive recipient negative (D<sup>+</sup>/R<sup>−</sup>) patients have greater viremia risk than D<sup>−</sup>/R<sup>−</sup>. The majority of patients are R<sup>+</sup> having intermediate serologic risk. To characterize the long-term impact of CMV infection and assess viremia risk, we sought to measure the effects of CMV on the recipient immune epigenome. Specifically, we profiled DNA methylation in 156 individuals before lung or kidney transplant. We found that the methylome of CMV positive SOT recipients is hyper-methylated at <i>loci</i> associated with neural development and Polycomb group (PcG) protein binding, and hypo-methylated at regions critical for the maturation of lymphocytes. In addition, we developed a machine learning-based model to predict the recipient CMV serostatus after correcting for cell type composition and ancestry. This CMV episcore measured at baseline in R<sup>+</sup> individual stratifies viremia risk accurately in the lung transplant cohort, and along with serostatus the CMV episcore could be a potential biomarker for identifying R<sup>+</sup> patients at high viremia risk.
DOI: 10.3535/b6w-nxt-msg
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e3v-3yf-kcl
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/75vmhb3wbg
title: Tunisian Foreign Debt Data

description: Quarterly data of the Tunisian foreign debt and some other indicators (savings, exchange, current deficit, ...)
DOI: 10.3535/9bs-51e-d5t
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qgw-gvw-t72
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25392/leicester.data.25872169.v1
title: Interview protocols

description: The Positive Adaptation to Compound Risk project was funded by the British Academy’s Humanities and Social Sciences Tackling Global Challenges scheme. The goal of the project was to contribute to our understanding of which resilience-enabling factors impact depression outcomes differentially (that is, have greater or lesser protective value) for young people at lower and higher levels of risk exposure, or how consistent these factors might be over time. The project engaged with 57 young people aged 18-26 living in eMbalenhle, South Africa. Each participant contributed 10 weeks of digital diary entries between July and November 2021, and was interviewed 3 times (June 2021, December 2021, June 2022) using the interview schedules in this resource.
DOI: 10.3535/b4b-8wk-zvq
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bsh-9xc-n7g
title: Conularia sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.4464220
title: Koranic Science, a Copy of Kashshâf [IO Bijapur 275, 276, 277, 278]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 275, 276, 277, 278.in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 54 here with further notations and hyperlinks].


54.

B 275, 276, 277, 278. Size 121/4 in. by 71/2 in.; foll. 726. Twenty-six lines in a page.

Another copy of the Kashshâf, including the whole text of the Koran. Well written. Dated Shawwal, 921.1

This MS. Has been spoiled by damp. It has also many defects, which were supplied in a later hand; but since then a number of leaves of both sets have again fallen out. Originally in four volumes. The first concludes with Sûrah 6 (fol. 184); the second with Sû. 18 (fol. 376); the third with Sû. 38 (fol. 559v.). The beginning of the fourth, being in the second hand, is on the same page.

Catal. p. 219, i.

 

1 The beginning of the colophon, containing the name of the scribe, has been erased.
DOI: 10.5281/zenodo.4464221
title: Koranic Science, a Copy of Kashshâf [IO Bijapur 275, 276, 277, 278]

description: al-Qurʼān القرآن الكريم

This manuscript is now IO Bijapur 275, 276, 277, 278.in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 54 here with further notations and hyperlinks].


54.

B 275, 276, 277, 278. Size 121/4 in. by 71/2 in.; foll. 726. Twenty-six lines in a page.

Another copy of the Kashshâf, including the whole text of the Koran. Well written. Dated Shawwal, 921.1

This MS. Has been spoiled by damp. It has also many defects, which were supplied in a later hand; but since then a number of leaves of both sets have again fallen out. Originally in four volumes. The first concludes with Sûrah 6 (fol. 184); the second with Sû. 18 (fol. 376); the third with Sû. 38 (fol. 559v.). The beginning of the fourth, being in the second hand, is on the same page.

Catal. p. 219, i.

 

1 The beginning of the colophon, containing the name of the scribe, has been erased.
DOI: 10.6084/m9.figshare.19258859.v1
title: A systems biological analysis of ATF4-GADD34-CHOP regulatory triangle upon endoplasmic reticulum stress

description: L_2104010_01_GyN_KE_3+.raw untreatedL_2104010_03_GyN_KE_4+t.raw thapsigargin<br>L_210612_05_GyN3+.raw untreatedL_210612_07_GyN4+.raw thapsigarginL_210923_09.raw untreatedL_210923_11.raw thapsigargin
DOI: 10.6084/m9.figshare.21542388.v1
title: Dataset on the changes in microbiome of T1D mice receiving the gut microbiota from normal control mice

description: <strong>Abstract</strong> After 1 week of acclimation, mice were injected with streptozocin (STZ) for 5 days to develop type 1 diabetic (T1D) mice and then administered with a 5-day antibiotic (Abx) treatment after 8 weeks. Subsequently, faecal material from normal control mice was transferred to Abx-treated T1D mice (FMT) for 2 weeks. The change in the gut microbiome of T1D mice receiving the gut microbiota from normal control mice were analyzed by metagenomic sequencing analysis and presented in this dataset. The detailed information including the development of T1D mouse model, FMT, sample collection and metagenomic analysis were provided in the file named “Protocols for Microbiome”. <br> <strong>Acknowledgements</strong> This work was supported by the National Natural Science Foundation of China (Nos. 21974096, 22074106，82000384). We would also like to acknowledge the Scientific Research Center and the Laboratory Animal Center of Wenzhou Medical University for Technical Services.
DOI: 10.3535/770-fw9-qay
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20210774.v1
title: Wheat NAM RNAi flag leaf timecourse data files

description: Data files associated with “Wheat <em>NAM </em>genes regulate the majority of early monocarpic senescence transcriptional changes including nitrogen remobilisation genes” by Tayyaba Andleeb and Philippa Borrill. <br> This is an RNA-seq dataset from wheat flag leaves from 3 to 26 days after anthesis in wild type and <em>NAM </em>RNAi plants. <br> <strong>Data included is:</strong> Masked fasta reference file used for mapping (IWGSC_v1.1_ALL_20170706_transcripts_masked_NAM.fasta). Input files used to run kallisto to map the reads. Count, tpm and gene lengths outputs from kallisto for Wild Type (control) and <em>NAM </em>RNAi (RNAi) samples. <br> Scripts used for mapping are available on Github: <sub>Borrill-Lab/NAM_RNAi_Senescence (github.com)</sub>
DOI: 10.6084/m9.figshare.22317700.v1
title: The Dynamic Appraisal of Situational Aggression: Inpatient Version Estonian validation

description: This dataset was used for the validation study of the Estonian version of the imminet aggression risk assessment instrument - Dynamic Appraisal of Situational Aggression: Inpatient Version (DASA:IV)
DOI: 10.6084/m9.figshare.26123824.v1
title: Adolescent PA, BMI and HRQOL

description: Dataset on BMI, PA and HRQOL in adolescent
DOI: 10.6084/m9.figshare.7330586.v1
title: Human Convalescent Serum Sample after CHIKV and DENV seroconversion.

description: Human Convalescent Serum Sample collected after CHIKV and DENV seroconversion.
DOI: 10.17632/m6c4r8zfdb
title: Transformer Language Models for UX Dimensions in VR Gaming

description: This repository contains seven fine-tuned transformer models for analyzing UX dimensions in virtual reality (VR) gaming. The models are based on RoBERTa-large [1] and were fine-tuned on 2,100 VR game reviews to classify sentiment across seven UX dimensions: Immersion, Presence, Achievement, Engagement, Embodiment, Physical Discomfort, and Controllability.

Each model assigns one of three possible sentiment labels to user reviews:
0 (neutral): The UX dimension is mentioned neutrally or not discussed.
1 (positive): The UX dimension is described positively.
2 (negative): The UX dimension is described negatively.

These models were developed as part of the research study:
Pasch, S., Lee, S., Cha, M.C. (2025). Exploring UX Dimensions and Experience-Levels in VR Gaming: Insights from Online Reviews using Transformer Models.

Citation:
Please cite the corresponding research paper when using these models in your work.

Additional References:
[1] Liu, Y., Ott, M., Goyal, N., Du, J., Joshi, M., Chen, D., ... & Stoyanov, V. (2019). RoBERTa: A robustly optimized BERT pretraining approach. arXiv preprint arXiv:1907.11692.
DOI: 10.3535/2cc-q93-sr7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ltc-5s5-w3w
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/01r-mdw-1pr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/13l-r4n-rwd
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1330222.v1
title: Irish Surnames and Slave ownership

description: McLysaght's "Irish Families" cross referenced with the U.S. Slave Schedules (1850) and the Slave Compensation Records (1834). I believe that my data, while cursory, is suggestive of the level of slave-ownership among those of Irish descent. Hopefully this ‘first pass’ review will lead to more in-depth research that will tease out the complexities of these family histories.
DOI: 10.6084/m9.figshare.5114518.v2
title: Silhouettes of animal scavengers

description: Silhouettes of a raccoon dog, a weasel, a crow, and a burying beetle.
DOI: 10.3535/gp7-7hw-vgg
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m04-bkz-c2j
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xk9g24gcxb
title: PNAS 202122618

description: The plasmid maps used in the main manuscript "Green fluorescent cAMP indicator of high speed and specificity suitable for neuronal live-cell imaging"
DOI: 10.3535/k4f-3ae-9dl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/law-0d0-xjx
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ez4-2fa-8k3
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.