cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/zhkggj/28advw
title: 2V-50

description: sigma=2Volts; This is a FITS file with 1 (primary) HDU. The following recognized metadata keys have been found in the FITS file: NAXIS2; NAXIS; NAXIS1; NAXIS0;
DOI: 10.7910/dvn/zhkggj/306zvx
title: 2V-28

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/jupqlt
title: 2V-10

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/xhaeom
title: 2V-11

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/f8uvmk
title: 2V-21

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/epvnqn
title: 2V-40

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/jx1b5y
title: 2V-45

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/u0mxbq
title: 2V-30

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/npxo52
title: 2V-15

description: sigma=2Volts
DOI: 10.7910/dvn/zhkggj/eypkbe
title: Nano.pdf

description: Manuscript
DOI: 10.7910/dvn/zhkggj
title: Amplification of DNA Brownian Motion Using Electrokinetic Noise

description: This dataset was collected to study the effects of applied white Gaussian electrokinetic noise on the diffusivity of single DNA molecules inside a nanofluidic slit. Our raw data consists of image sequences in FITS format (Flexible Image Transport System). Each image shows a fluorescent Lambda DNA molecule stained by YOYO-1 dye at a 10:1 base-pair to dye ratio diffusing inside a 110 nm deep nanoslit under specified amounts of applied noise. An imaging system comprising an inverted Nikon TE2000U microscope, an ANDOR iXon 897 EMCCD camera, an X-Cite UV illumination system, and a 60X, 0.7 NA, water-immersion objective lens with an extra 1.5X magnification factor was used to acquire the images. We applied 8 different noise intensities and recorded about 50-70 molecules per noise intensity. These data can be used to find trajectories of the centers of mass of the molecules and to analyze the radii of gyration and DNA shapes. Sigma represents the standard deviation of the applied Gaussian noise.
DOI: 10.5066/p997p4gm
title: Scientific observations of fishes in tidal wetlands of the upper Sacramento San Joaquin Delta using imaging sonar devices, derived from 2018 field data

description: Major tidal wetland habitat restoration efforts are planned to benefit Delta Smelt and other imperiled species in the Sacramento-San-Joaquin Delta. However, successful implementation of habitat restoration is constrained by a paucity of information on the services and functions tidal wetlands provide for fishes. This knowledge gap is largely due to the difficulties of collecting ecological data in these challenging environments. For example, the dynamic nature of tidally influenced habitats requires high frequency sampling in order to accurately characterize environmental conditions and how fishes' responses to them. The study associated with this data used an interdisciplinary approach to understand how tidal wetlands function as fish habitat. More specifically this study was designed to monitor fish movement into and out of two tidal wetland habitats and elucidate the environmental drivers of these habitat use patterns.The CAWSC Hydrodyanmics group collected water quality and flow information and this data was processed and stored in Aquarius.The CAWSC Aquatic Ecology group collected observational footage of fishes at a commensurate frequency with hydrodynamics data using imaging sonar devices. This data release contains information about the fishes observed during a portion of this study.
DOI: 10.6084/m9.figshare.12895160
title: R0189_20171014a_videos

description: Rat 0189, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12895160.v1
title: R0189_20171014a_videos

description: Rat 0189, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.11774841
title: Supplemental Material for Qiu et al., 2020

description: Supplemental Material for Qiu et al., 2020.File S1 includes AUDPC data for Goss's wilt.File S2 includes genotypes and LSMeans used for ICIMapping.<br>
DOI: 10.5281/zenodo.4008560
title: KM1906_Gradients3_Surface_O2Ar_NCP

description: This data set gives values of dissolved gas saturation and calculated rates of net community production implied from those observations in the North Pacific Ocean. Data were collected between April 10, 2019 and April 29, 2019 using an equilibrated inlet mass spectrometer (EIMS, Cassar et al., 2009) connected to the surface uncontaminated seawater supply of the Research Vessel Kilo Moana on Cruise ID KM1906. Data were collected near-continuously over the cruise track which departed and returned from Honolulu, HI and sampled waters of the North Pacific subtropical gyre and transition zone.
DOI: 10.5281/zenodo.4005488
title: Magnetic resonance imaging of spin-wave transport and interference in a magnetic insulator

description: Data corresponding to the figures of the main text of "Magnetic resonance imaging of spin-wave transport and interference in a magnetic insulator"
DOI: 10.5281/zenodo.4005487
title: Magnetic resonance imaging of spin-wave transport and interference in a magnetic insulator

description: Data corresponding to the figures of the main text of "Magnetic resonance imaging of spin-wave transport and interference in a magnetic insulator"
DOI: 10.18112/openneuro.ds003100.v1.0.0
title: ChildBrain Audiovisual MEG Dataset
DOI: 10.5281/zenodo.3754986
title: Data for "Energetic electron bombardment of Ganymede's surface" by Liuzzo et al., 2020

description: See AA_README.txt for a description of each of the files.
description: Supported by the National Aeronautics and Space Administration Solar System Workings Program, grant number NNX16AR99G.
DOI: 10.6084/m9.figshare.12899570
title: mask_rcnn

description: dataset for testing
DOI: 10.6084/m9.figshare.12899570.v1
title: mask_rcnn

description: dataset for testing
DOI: 10.4225/22/5a9b4e9a42dd0
title: Non-random perch selection by male lizards, Amphibolurus muricatus | Supplementary material

description: Supplementary material accompanying paper:<br>Salisbury JW & Peters RA.<br>Non-random perch selection by male lizards, Amphibolurus muricatus<br>
DOI: 10.6084/m9.figshare.12899687
title: Gender inequality and climate study

description: Relevant data for 130 countries<br>
DOI: 10.6084/m9.figshare.12899687.v1
title: Gender inequality and climate study

description: Relevant data for 130 countries<br>
DOI: 10.5517/ccdc.csd.cc21fjkl
title: CCDC 1889839: Experimental Crystal Structure Determination

description: Related Article: Adam W. Crawford, Ryan H. Groeneman, Daniel K. Unruh, Kristin M. Hutchins|2019|Chem.Commun.|55|3258|doi:10.1039/C9CC00836E
DOI: 10.5517/ccdc.csd.cc24kc03
title: CCDC 1982884: Experimental Crystal Structure Determination

description: Related Article: Khadija Munawar, Muhammad Adil Mansoor, Marilyn M. Olmstead, Tuan Zaharinie, Mohd Nashrul Mohd Zubir, Mohamad Haniffa, Wan Jefrey Basirun, Muhammad Mazhar|2020|Mater.Chem.Phys.|255|123220|doi:10.1016/j.matchemphys.2020.123220
DOI: 10.5281/zenodo.3969048
title: Test Evolution Dataset

description: We provide a large dataset with information relative to the test evolution in 18 highly configurable systems and 18 single systems.
DOI: 10.5281/zenodo.3969047
title: Test Evolution Dataset

description: We provide a large dataset with information relative to the test evolution in 18 highly configurable systems and 18 single systems.
DOI: 10.25345/c5kf4s
title: MassIVE MSV000086045 - Thiele HSF1 C HS HSR Interactome
title: Methods. Quantitative LCMSMS was performed on 4 uL of each sample using a nanoAcquity UPLC system Waters Corp coupled to a Thermo QExactive HF high resolution accurate mass tandem mass spectrometer Thermo via a nanoelectrospray ionization source. Briefly the sample was first trapped on a Symmetry C18 20 mm x 180 um trapping column 5 ul min at 99.9 0.1 vv water acetonitrile after which the analytical separation was performed using a 1.8 um Acquity HSS T3 C18 75 um x 250 mm column Waters Corp. with a 90min linear gradient of 5 to 30 acetonitrile with 0.1 percent formic acid at a flow rate of 400 nanoliters minute nL min with a column temperature of 55C. Data collection on the QExactive HF mass spectrometer was performed in a data dependent acquisition DDA mode of acquisition with a r 120,000 mz 200 full MS scan from mz 375 to 1600 with a target AGC value of 3e6 ions followed by 15 MSMS scans at r 30000 mz 200 at a target AGC value of 5e4 ions and 45 ms. A 20s dynamic exclusion was employed to increase depth of coverage. The total analysis cycle time for each sample injection was approximately 2 hours. Following 19 total LCMSMS analyses excluding conditioning runs, but including 4 replicate QC injections data was imported into Rosetta Elucidator v 4.0 Rosetta Biosoftware Inc., and analyses were aligned based on the accurate mass and retention time of detected ions features using PeakTeller algorithm in Elucidator. Relative peptide abundance was calculated based on area-under-the-curve AUC of the selected ion chromatograms of the aligned features across all runs. The MSMS data was searched against the SwissProt M. musculus database downloaded in May 2017 with additional proteins, including yeast ADH1, bovine serum albumin, as well as an equal number of reversed-sequence decoys false discovery rate determination. Mascot Distiller and Mascot Server v 2.5 Matrix Sciences were utilized to produce fragment ion spectra and to perform the database searches. Database search parameters included fixed modification on Cys carbamidomethyl and variable modifications on Meth oxidation and Asn and Gln deamidation. Full tryspin enzyme rules were used with up to 2 missed cleavages with mass tolerances of 5 ppm for precursor and 0.02da for product ions. After individual peptide scoring using the PeptideProphet algorithm in Elucidator, the data was annotated at a 1 percent peptide false discovery rate.
DOI: 10.6084/m9.figshare.3761562.v1591
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4009794
title: Radial changes in wood functional traits in a rain forest from Eastern Amazonia

description: Trees can modify their wood structure in response to changes in mechanical, hydraulic and storage demands during their life-cycles. Thus, examining radial variations in wood traits is important to expand our knowledge of tree functioning and species ecological strategies. Yet, several aspects of radial changes in wood functional traits are still poorly understood, especially in tropical angiosperm trees. Here, we examined radial shifts in wood traits in trunks of lowland tropical forest species and explored their potential ecological implications. We measured wood specific gravity (WSG) and eight wood anatomical traits in 19 tree species with contrasting shade-tolerance. We first examined radial variations in WSG and wood anatomical traits. Then, we asked if anatomical traits drove radial variations in WSG, and whether WSG, vessel fraction and vessel composition, <em>i.e.,</em> the ratio between vessel lumen area and number, vary independently from each other along the radius gradients. Most species had significant radials shifts in WSG and/or wood anatomical traits. Positive radial gradients in WSG were explained by different combinations of fiber and parenchyma traits, while negative radial shifts were mainly unrelated to anatomical traits. We also found that, in general, WSG, vessel fraction and vessel composition were unrelated in any radial position. This study illustrates the substantial radial variations in wood functional traits that occur in tree species from a lowland tropical forest. Our results provide valuable insights into stem allocation patterns during tree development, which would be important to increase our knowledge on tree functioning and life-history variations across coexisting species.
DOI: 10.5281/zenodo.4009793
title: Radial changes in wood functional traits in a rain forest from Eastern Amazonia

description: Trees can modify their wood structure in response to changes in mechanical, hydraulic and storage demands during their life-cycles. Thus, examining radial variations in wood traits is important to expand our knowledge of tree functioning and species ecological strategies. Yet, several aspects of radial changes in wood functional traits are still poorly understood, especially in tropical angiosperm trees. Here, we examined radial shifts in wood traits in trunks of lowland tropical forest species and explored their potential ecological implications. We measured wood specific gravity (WSG) and eight wood anatomical traits in 19 tree species with contrasting shade-tolerance. We first examined radial variations in WSG and wood anatomical traits. Then, we asked if anatomical traits drove radial variations in WSG, and whether WSG, vessel fraction and vessel composition, <em>i.e.,</em> the ratio between vessel lumen area and number, vary independently from each other along the radius gradients. Most species had significant radials shifts in WSG and/or wood anatomical traits. Positive radial gradients in WSG were explained by different combinations of fiber and parenchyma traits, while negative radial shifts were mainly unrelated to anatomical traits. We also found that, in general, WSG, vessel fraction and vessel composition were unrelated in any radial position. This study illustrates the substantial radial variations in wood functional traits that occur in tree species from a lowland tropical forest. Our results provide valuable insights into stem allocation patterns during tree development, which would be important to increase our knowledge on tree functioning and life-history variations across coexisting species.
DOI: 10.5281/zenodo.4009469
title: Whole Genome Sequencing of birches (Betulaceae: Betula) from the Kenai Peninsula, Alaska

description: We sought to learn more about the identity of <em>Betula kenaica</em> W.H.Evans, the Kenai birch, which has remained somewhat enigmatic since its description in 1899. Tissue samples were collected from two birch specimens on August 12, 2019. Cuttings were taken from a <em>B. kenaica</em> individual ("BK01" in this dataset, https://arctos.database.museum/guid/KNWR:Herb:11553) from Kasilof Beach, Kasilof, Alaska, one of the two type localities of <em>B. kenaica</em>. Cuttings were also taken from a <em>Betula pendula</em> subsp. <em>mandshurica</em> (Regel) Ashburner & McAll<em>.</em> individual ("BP01" in this dataset, https://arctos.database.museum/guid/KNWR:Herb:11556) from Soldotna, Alaska. The cuttings were shipped to SNPsaurus (Eugene, Oregon, USA, https://www.snpsaurus.com/) for whole genome sequencing. This dataset includes specimen collection data, the sample sample submission form, and the three files delivered by SNPsaurus.
description: Notes from SNPsaurus: 2019-09-10: We were having some issues with the DNA isolated from the fresh material (sticky, hard to work with). We have the libraries on a SMRT cell in line to be sequenced...maybe in a week. But we are doing it as a test to make sure it all looks good. If it does look good we will be able to go for full sequencing soon after. 2019-09-20: We ran out the two libraries made and they ended up getting 35X read depth data back, so I ran BK01 through the assembler as a test. It definitely all looks good. It assembled to 330 Mb with a N50 contig length of 80kb...not bad for not full sequencing. I did a quick blastn of the contigs and they hit Betula and Quercus and other trees so that all looks good as well. I think Allison had to run everything she had but we will be motivated to do another round of extractions and finish these off. 2019-11-25: I have been fiddling with BP01...we doubled the read count but the assembly just isn't improving. BK01 got longer contigs after it got extra reads, so I ran the gene annotation and have a download link for you. I will start the gene annotation for BP01 and get that for you soon while we think about how we can get the assembly working better. [...] the DNA from that sample remained sticky and hard to work with so that likely affected the library prep/DNA fragment length.
DOI: 10.5281/zenodo.4009468
title: Whole Genome Sequencing of birches (Betulaceae: Betula) from the Kenai Peninsula, Alaska

description: We sought to learn more about the identity of <em>Betula kenaica</em> W.H.Evans, the Kenai birch, which has remained somewhat enigmatic since its description in 1899. Tissue samples were collected from two birch specimens on August 12, 2019. Cuttings were taken from a <em>B. kenaica</em> individual ("BK01" in this dataset, https://arctos.database.museum/guid/KNWR:Herb:11553) from Kasilof Beach, Kasilof, Alaska, one of the two type localities of <em>B. kenaica</em>. Cuttings were also taken from a <em>Betula pendula</em> subsp. <em>mandshurica</em> (Regel) Ashburner & McAll<em>.</em> individual ("BP01" in this dataset, https://arctos.database.museum/guid/KNWR:Herb:11556) from Soldotna, Alaska. The cuttings were shipped to SNPsaurus (Eugene, Oregon, USA, https://www.snpsaurus.com/) for whole genome sequencing. This dataset includes specimen collection data, the sample sample submission form, and the three files delivered by SNPsaurus.
description: Notes from SNPsaurus: 2019-09-10: We were having some issues with the DNA isolated from the fresh material (sticky, hard to work with). We have the libraries on a SMRT cell in line to be sequenced...maybe in a week. But we are doing it as a test to make sure it all looks good. If it does look good we will be able to go for full sequencing soon after. 2019-09-20: We ran out the two libraries made and they ended up getting 35X read depth data back, so I ran BK01 through the assembler as a test. It definitely all looks good. It assembled to 330 Mb with a N50 contig length of 80kb...not bad for not full sequencing. I did a quick blastn of the contigs and they hit Betula and Quercus and other trees so that all looks good as well. I think Allison had to run everything she had but we will be motivated to do another round of extractions and finish these off. 2019-11-25: I have been fiddling with BP01...we doubled the read count but the assembly just isn't improving. BK01 got longer contigs after it got extra reads, so I ran the gene annotation and have a download link for you. I will start the gene annotation for BP01 and get that for you soon while we think about how we can get the assembly working better. [...] the DNA from that sample remained sticky and hard to work with so that likely affected the library prep/DNA fragment length.
DOI: 10.5281/zenodo.4009541
title: In situ microcosms deployed at the coast of British Columbia (Canada) to study dilbit weathering and associated microbial communities under marine conditions. (Metagenomic data support).

description: This file repository contains the co-assembly of all samples from the manuscript entitled "In situ microcosms deployed at the coast of British Columbia (Canada) to study dilbit weathering and associated microbial communities under marine conditions". It also contains predicted genes sequence files in faa (fasta amino acids) and fna (fasta nucleic acids) formats.
DOI: 10.5281/zenodo.4009540
title: In situ microcosms deployed at the coast of British Columbia (Canada) to study dilbit weathering and associated microbial communities under marine conditions. (Metagenomic data support).

description: This file repository contains the co-assembly of all samples from the manuscript entitled "In situ microcosms deployed at the coast of British Columbia (Canada) to study dilbit weathering and associated microbial communities under marine conditions". It also contains predicted genes sequence files in faa (fasta amino acids) and fna (fasta nucleic acids) formats.
DOI: 10.5281/zenodo.4004918
title: High Biodiversity Wilderness Areas (2004)

description: Shapefile associated with the High Biodiversity Wilderness Areas as defined by Mittermeier, et.al (2003), produced by Conservation International. Associated journal article: Mittermeier, R.A., Mittermeier, C.G., Brooks, T.M., Pilgrim, J.D., Konstant, W.R., Fonseca, G.A.B. da & Kormos, C. (2003) Wilderness and biodiversity conservation. Proceedings of the National Academy of Sciences of the U.S.A. 100: 10309–10313. https://doi.org/10.1073/pnas.1732458100
description: {"references": ["https://doi.org/10.1073/pnas.1732458100"]}
DOI: 10.5281/zenodo.4004917
title: High Biodiversity Wilderness Areas (2004)

description: Shapefile associated with the High Biodiversity Wilderness Areas as defined by Mittermeier, et.al (2003), produced by Conservation International. Associated journal article: Mittermeier, R.A., Mittermeier, C.G., Brooks, T.M., Pilgrim, J.D., Konstant, W.R., Fonseca, G.A.B. da & Kormos, C. (2003) Wilderness and biodiversity conservation. Proceedings of the National Academy of Sciences of the U.S.A. 100: 10309–10313. https://doi.org/10.1073/pnas.1732458100
description: {"references": ["https://doi.org/10.1073/pnas.1732458100"]}
DOI: 10.3886/e120861v2
title: Significant Executive Orders and Proclamations 1861-2016

description: This project contains a list of executive orders and proclamations that were mentioned in The New York Times from 1861-2016 (Excel files contains non-ceremonial and ceremonial directives, ceremonial directives are highlighted yellow). See Unilateral Politics in the Traditional Era: Significant Executive Orders and Proclamations, 1861–1944 (Williams 2020) for a detailed explanation on how the data was collected. Also contains data (and codebook) used in the statistical analysis in Williams 2020 (Excel and Stata files). Contact Raymond Williams if you have questions about the data at rtw0613@gmail.com
DOI: 10.6084/m9.figshare.9977372
title: The role of phosphorus limitation in shaping soil bacterial communities and their metabolic capabilities.

description: Dataset for publication
DOI: 10.25345/c5fn1g
title: MassIVE MSV000086046 - Transient expression of Arabidopsis UDP-dependent glycosyltransferase candidates in Nicotiana benthamiana
title: Experimental Goal: To determine a UDP-dependent glycosyltransferase from Arabidopsis capable of glycosylating N-hydroxypipecolic acid, a small molecule signal in plant systemic acquired resistance. Methods: For screening of candidate UGTs, Agrobacteria harboring Arabidopsis ALD1, FMO1, and respective UGT genes were combined in equal proportions with each at an OD600 of 0.1. In all cases, Agrobacteria harboring GFP was added to ensure an equal final OD600 of 0.6. These solutions were infiltrated into leaves of 4-week-old N. benthamiana plants using needleless syringes. Plants were incubated for 72 h on growth shelves on a 16-h light/8-h dark cycle prior to sample harvest. Plant tissue was harvested, lyophilized to dryness, and homogenized using a ball mill (Retsch MM 400) at 25 Hz for 2 min. Samples were resuspended in 20 ul of 80:20 MeOH:H2O per mg dry tissue and incubated at 4C for 10 min. The liquid fraction of each sample was filtered using a 0.45 um filter and analyzed using previously published methods on an Agilent 1260 HPLC coupled to an Agilent 6520 quadrupole time-of-flight electrospray ionization (Q-TOF ESI) mass spectrometer (Chen et al., 2018. PNAS. E4920-E4929). Samples were analyzed for the production of NHP-Glc (m/z = 308.134).