cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12940369
title: Additional file 3 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 3 mRNA expression values. Gene ID, fold change, FDR-corrected p-value, gene description and the six expression values as TPM are reported for the 403 differentially expressed genes in the comparison between samples S1, S4 and S6 versus S2, S3 and S5. Gene directly involved in oyster antiviral pathway are highlighted in yellow, whereas other genes discussed in the text are highlighted in light blue.
DOI: 10.7910/dvn/i7kcvh/ctqfoq
title: datashsf1000research.tab

description: :unav
DOI: 10.6084/m9.figshare.12940363
title: Additional file 1 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 1. miRNA expression values. miRNA ID according to MirGeneDB, average expression value, percentage of total miRNA expression, expression levels in the six samples and coefficient of variation of the expression values are reported for 132 oyster miRNAs. miRNAs reported in bold resulted differentially expressed (Table 2), while underlined miRNAs contributed less to 0.01% to the total expression.
DOI: 10.6084/m9.figshare.12940363.v1
title: Additional file 1 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 1. miRNA expression values. miRNA ID according to MirGeneDB, average expression value, percentage of total miRNA expression, expression levels in the six samples and coefficient of variation of the expression values are reported for 132 oyster miRNAs. miRNAs reported in bold resulted differentially expressed (Table 2), while underlined miRNAs contributed less to 0.01% to the total expression.
DOI: 10.6084/m9.figshare.12940372.v1
title: Additional file 4 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 4. OsHV-1 expression values. Gene ID, expression values in samples S1, S4, S6 plus in other 7 datasets are reported for the OsHV-1 genes.
DOI: 10.6084/m9.figshare.12940369.v1
title: Additional file 3 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 3 mRNA expression values. Gene ID, fold change, FDR-corrected p-value, gene description and the six expression values as TPM are reported for the 403 differentially expressed genes in the comparison between samples S1, S4 and S6 versus S2, S3 and S5. Gene directly involved in oyster antiviral pathway are highlighted in yellow, whereas other genes discussed in the text are highlighted in light blue.
DOI: 10.7910/dvn/i7kcvh/cu5cnw
title: student_questionaire_eng.pdf

description: student questionnaire English
DOI: 10.6084/m9.figshare.12940371
title: Additional file 3 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 3. Mixed effects logistic regressions - parents (odds ratios, 95% CI).
DOI: 10.6084/m9.figshare.12940380
title: Additional file 6 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 6. Difference (95% CI) in child accelerometer-derived outcomes at months 6 and 12 (unadjusted for wear time since wear time was comparable across arms).
DOI: 10.6084/m9.figshare.12940371.v1
title: Additional file 3 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 3. Mixed effects logistic regressions - parents (odds ratios, 95% CI).
DOI: 10.6084/m9.figshare.12940372
title: Additional file 4 of Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

description: Additional file 4. OsHV-1 expression values. Gene ID, expression values in samples S1, S4, S6 plus in other 7 datasets are reported for the OsHV-1 genes.
DOI: 10.6084/m9.figshare.12940380.v1
title: Additional file 6 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 6. Difference (95% CI) in child accelerometer-derived outcomes at months 6 and 12 (unadjusted for wear time since wear time was comparable across arms).
DOI: 10.6084/m9.figshare.12940377
title: Additional file 5 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 5. Parental and child average accelerometer wear time (min/day) by study arm.
DOI: 10.6084/m9.figshare.12940383
title: Additional file 7 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 7. Moderation analysis results.
DOI: 10.6084/m9.figshare.12940383.v1
title: Additional file 7 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 7. Moderation analysis results.
DOI: 10.6084/m9.figshare.12940374
title: Additional file 4 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 4. Mixed effects logistic regressions - children (odds ratios, 95% CI).
DOI: 10.7910/dvn/i7kcvh/kv22af
title: student_questionaire_thai.pdf

description: student questionnaire Thai
DOI: 10.6084/m9.figshare.12940377.v1
title: Additional file 5 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 5. Parental and child average accelerometer wear time (min/day) by study arm.
DOI: 10.6084/m9.figshare.12940374.v1
title: Additional file 4 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 4. Mixed effects logistic regressions - children (odds ratios, 95% CI).
DOI: 10.6084/m9.figshare.12940386
title: Additional file 8 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 8. Pearson correlation analysis between accelerometer-logged steps and activity tracker-logged steps.
DOI: 10.6084/m9.figshare.12940396
title: Additional file 4 of Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae)

description: Additional File 4. Supplementary Tables S7-S11.
DOI: 10.6084/m9.figshare.12940386.v1
title: Additional file 8 of Leveraging family dynamics to increase the effectiveness of incentives for physical activity: the FIT-FAM randomized controlled trial

description: Additional file 8. Pearson correlation analysis between accelerometer-logged steps and activity tracker-logged steps.
DOI: 10.6084/m9.figshare.12940396.v1
title: Additional file 4 of Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae)

description: Additional File 4. Supplementary Tables S7-S11.
DOI: 10.6084/m9.figshare.12940488
title: Additional file 5 of GenoTypeMapper: graphical genotyping on genetic and sequence-based maps

description: Additional file 5: Table S2. In total, 7,245 iSelect markers with physical and genetic positions.
DOI: 10.6084/m9.figshare.12940488.v1
title: Additional file 5 of GenoTypeMapper: graphical genotyping on genetic and sequence-based maps

description: Additional file 5: Table S2. In total, 7,245 iSelect markers with physical and genetic positions.
DOI: 10.6084/m9.figshare.12940510.v1
title: Additional file 2 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 2. Table S2. Reference and alternate allele counts in cDNA and gDNA sequencing samples after editing variants.
DOI: 10.6084/m9.figshare.12940513
title: Additional file 3 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 3. Table S3. Effect sizes of edited variants which passed QC filtering steps.
DOI: 10.6084/m9.figshare.12940507.v1
title: Additional file 1 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 1. Table S1. Information on the variants chosen for editing.
DOI: 10.6084/m9.figshare.12940507
title: Additional file 1 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 1. Table S1. Information on the variants chosen for editing.
DOI: 10.6084/m9.figshare.12940509
title: Additional file 1 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 1. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940510
title: Additional file 2 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 2. Table S2. Reference and alternate allele counts in cDNA and gDNA sequencing samples after editing variants.
DOI: 10.6084/m9.figshare.12940515.v1
title: Additional file 3 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 3. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940512
title: Additional file 2 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 2. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940512.v1
title: Additional file 2 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 2. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940518
title: Additional file 4 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 4. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940515
title: Additional file 3 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 3. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940509.v1
title: Additional file 1 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 1. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940524.v1
title: Additional file 6 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 6. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940521.v1
title: Additional file 5 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 5. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940513.v1
title: Additional file 3 of A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

description: Additional file 3. Table S3. Effect sizes of edited variants which passed QC filtering steps.
DOI: 10.6084/m9.figshare.12940521
title: Additional file 5 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 5. FastQC report for forward reads.
DOI: 10.6084/m9.figshare.12940518.v1
title: Additional file 4 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 4. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940524
title: Additional file 6 of A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

description: Additional file 6. FastQC report for reverse reads.
DOI: 10.6084/m9.figshare.12940549.v1
title: Additional file 3 of Moonlight is a key entrainer of lunar clock in the brain of the tropical grouper with full moon preference

description: Additional file 3:. Excel sheet file containing original data from real-time PCR for Figs. 2, 3, 4, and 5.
DOI: 10.6084/m9.figshare.12940549
title: Additional file 3 of Moonlight is a key entrainer of lunar clock in the brain of the tropical grouper with full moon preference

description: Additional file 3:. Excel sheet file containing original data from real-time PCR for Figs. 2, 3, 4, and 5.
DOI: 10.6084/m9.figshare.12940552.v1
title: Additional file 4 of Moonlight is a key entrainer of lunar clock in the brain of the tropical grouper with full moon preference

description: Additional file 4:. Excel sheet file containing results of statistical analysis for Figs. 2, 3, 4, and 5.
DOI: 10.6084/m9.figshare.12940552
title: Additional file 4 of Moonlight is a key entrainer of lunar clock in the brain of the tropical grouper with full moon preference

description: Additional file 4:. Excel sheet file containing results of statistical analysis for Figs. 2, 3, 4, and 5.
DOI: 10.6084/m9.figshare.12940557.v1
title: Additional file 2 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 2. Likely alcohol-sensitive, fetal sex-specific miRNAs (ANOVA-Bootstrap). Table includes MIMAT numbers, chromosomal location and names of the likely alcohol-sensitive, fetal sex-specific miRNAs for each sex in HEa and HEua in each of the second and third trimesters.
DOI: 10.6084/m9.figshare.12940557
title: Additional file 2 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 2. Likely alcohol-sensitive, fetal sex-specific miRNAs (ANOVA-Bootstrap). Table includes MIMAT numbers, chromosomal location and names of the likely alcohol-sensitive, fetal sex-specific miRNAs for each sex in HEa and HEua in each of the second and third trimesters.
DOI: 10.6084/m9.figshare.12940566
title: Additional file 5 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 5. Significant alcohol-sensitive, fetal sex-specific miRNAs (Effect-Size Bootstrap). Table includes sex-segregated miRNAs that exhibited median effect sizes that were outside the range of the 95% confidence estimate for the composite sample. The table shows the median effect size for each of the composite and sex-segregated analyses.
DOI: 10.6084/m9.figshare.12940566.v1
title: Additional file 5 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 5. Significant alcohol-sensitive, fetal sex-specific miRNAs (Effect-Size Bootstrap). Table includes sex-segregated miRNAs that exhibited median effect sizes that were outside the range of the 95% confidence estimate for the composite sample. The table shows the median effect size for each of the composite and sex-segregated analyses.
DOI: 10.6084/m9.figshare.12940572
title: Additional file 7 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 7. Table showing the 10 chromosome pairs with the greatest increase in significant cross correlations in either the HEa or HEua groups, relative to the UE group, for pregnancies with male and female fetuses. Percentage of chromosome pair change (%change)= [((no. of significant cross-correlations between miRNAs on a chromosome pair in alcohol exposed group) – (no. of significant cross-correlations between miRNAs on the same chromosome pair in the control, UE, group) * 100)/(no. of significant cross-correlations between miRNAs on the same chromosome pair in the control group)].
DOI: 10.6084/m9.figshare.12940572.v1
title: Additional file 7 of Association between fetal sex and maternal plasma microRNA responses to prenatal alcohol exposure: evidence from a birth outcome-stratified cohort

description: Additional file 7. Table showing the 10 chromosome pairs with the greatest increase in significant cross correlations in either the HEa or HEua groups, relative to the UE group, for pregnancies with male and female fetuses. Percentage of chromosome pair change (%change)= [((no. of significant cross-correlations between miRNAs on a chromosome pair in alcohol exposed group) – (no. of significant cross-correlations between miRNAs on the same chromosome pair in the control, UE, group) * 100)/(no. of significant cross-correlations between miRNAs on the same chromosome pair in the control group)].
DOI: 10.6084/m9.figshare.12940564
title: Additional file 3 of PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis

description: Additional file 3 Table S2: Complete list of significant gene-trait pairs at 5% FDR level identified in the multi-tissue PTWAS scan of 114 complex traits.
DOI: 10.6084/m9.figshare.12940564.v1
title: Additional file 3 of PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis

description: Additional file 3 Table S2: Complete list of significant gene-trait pairs at 5% FDR level identified in the multi-tissue PTWAS scan of 114 complex traits.
DOI: 10.6084/m9.figshare.12940561
title: Additional file 2 of PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis

description: Additional file 2 Table S1: Descriptions of 114 complex trait datasets used in the PTWAS analysis.
DOI: 10.6084/m9.figshare.7956398.v1
title: Additional file 3: of Marker genes as predictors of shared genomic function

description: Table S3. A list showing the ratio of shared genes for each bacterial genome comparison. Data is included for each of the three datasets; Full-length 16S rRNA, V4 16S rRNA, and MLSA. (XLSX 1048 kb)
DOI: 10.6084/m9.figshare.7956401.v1
title: Additional file 1: of Cx32 exerts anti-apoptotic and pro-tumor effects via the epidermal growth factor receptor pathway in hepatocellular carcinoma

description: Figure S1. The expression and distribution of Cx32 in HCC cell lines. Figure S2. The GJ function in HCC cell lines. Figure S3. The expression and distribution of Cx32 in HepG2-NC and HepG2-siCx32, SMMC-7721-vecotr and SMMC-7721-Cx32 cells. (ZIP 4027 kb)
DOI: 10.6084/m9.figshare.7956407.v1
title: Additional file 4: of Marker genes as predictors of shared genomic function

description: Table S4. Summary of BLAST results comparing the unshared gene content of bacterial genomes whose V4 16s rRNA clustered at 99% identity. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.17913003
title: Additional file 3 of Integrative blood-derived epigenetic and transcriptomic analysis reveals the potential regulatory role of DNA methylation in ankylosing spondylitis

description: Additional file 3: Supplementary Data S1. 4794 differentially methylated positions (DMPs) identified associated with ankylosing spondylitis in the discovery cohort. Supplementary Data S2. 1,048 differentially variable positions (DVPs) identified with iEVORA algorithm in the discovery cohort. Supplementary Data S3. 4,144 differentially expressed genes (DEGs) identified associated with ankylosing spondylitis in the discovery cohort. Supplementary Data S4. 158 differentially methylated positions (DMPs) identified to be correlated with the corresponding mRNA expression levels of 112 genes in Pearson correlation analyses. Supplementary Data S5. The differentially methylated positions (DMPs) of 6 key genes identified in the Pearson correlation analyses were verified in the validation cohort.
DOI: 10.6084/m9.figshare.17913003.v1
title: Additional file 3 of Integrative blood-derived epigenetic and transcriptomic analysis reveals the potential regulatory role of DNA methylation in ankylosing spondylitis

description: Additional file 3: Supplementary Data S1. 4794 differentially methylated positions (DMPs) identified associated with ankylosing spondylitis in the discovery cohort. Supplementary Data S2. 1,048 differentially variable positions (DVPs) identified with iEVORA algorithm in the discovery cohort. Supplementary Data S3. 4,144 differentially expressed genes (DEGs) identified associated with ankylosing spondylitis in the discovery cohort. Supplementary Data S4. 158 differentially methylated positions (DMPs) identified to be correlated with the corresponding mRNA expression levels of 112 genes in Pearson correlation analyses. Supplementary Data S5. The differentially methylated positions (DMPs) of 6 key genes identified in the Pearson correlation analyses were verified in the validation cohort.
DOI: 10.6084/m9.figshare.22631484.v1
title: Additional file 1 of Targeting inhibition of prognosis-related lipid metabolism genes including CYP19A1 enhances immunotherapeutic response in colon cancer

description: Additional file 1: Fig. S1. Stratified analysis of the LMrisk based on clinicopathological features including age, gender, T stage, N stage, M stage and TNM stage in TCGA dataset. Fig. S2. The LMrisk is an independent prognostic indicator in colon cancer. Fig. S3. Establishment and validation of the prognostic nomogram for colon cancer patients. Fig. S4. High CYP19A1 expression predicts poor prognosis and positively correlated with PD-L1 expression in the GEPIA webserver. Fig. S5. CYP19A1 inhibitor letrozole facilitates anti-PD-1 therapy in mice bearing orthotopic MC38 colon tumor. Fig. S6. A proposed mechanism to explain the role of CYP19A1 in tumor immune microenvironment in colon cancer. Supplementary Materials and Methods. Supplementary Table S1. The relationships between CYP19A1 expression and clinicopathological features including age, gender, T stage, N stage M stage and TNM stage in the tissue microarray. Supplementary Table S2. Univariate and multivariate Cox regression analyses of CYP19A1 expression in the human colon cancer tissue microarray. Supplementary Table S3. Effects of letrozole on body weight, biochemical profile and complete blood counts in the orthotopic MC38 tumor model.
DOI: 10.6084/m9.figshare.23691063
title: Elongation of Very Long Chain Fatty Acids-like 3 (Elovl3) is activated by ZHX2 and is a regulator of cell cycle progression. American Journal of Physiology- Gastrointestinal and Liver Physiology

description: Data supporting the manuscript Elongation of very long chain fatty acids like-3 (<em>Elovl3</em>) is activated by ZHX2 and is a regulator of cell cycle progression. American Journal of Physiology- Gastroenterology and Liver Physiology.
DOI: 10.6084/m9.figshare.22631439
title: Additional file 3 of Stalled oligodendrocyte differentiation in IDH-mutant gliomas

description: Additional file 3: Table S2. Frequencies of cell populations in single cell RNA-seq samples analyzed.
DOI: 10.6084/m9.figshare.22631442
title: Additional file 4 of Stalled oligodendrocyte differentiation in IDH-mutant gliomas

description: Additional file 4: Table S3. Pearson correlation coefficient between PM glioma cells and cell populations in murine oligodendrocyte lineage.
DOI: 10.6084/m9.figshare.22631442.v1
title: Additional file 4 of Stalled oligodendrocyte differentiation in IDH-mutant gliomas

description: Additional file 4: Table S3. Pearson correlation coefficient between PM glioma cells and cell populations in murine oligodendrocyte lineage.