cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh579697.07fu
title: SH579697.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh579698.07fu
title: SH579698.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3608030.08fu
title: SH3608030.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3608031.08fu
title: SH3608031.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh579699.07fu
title: SH579699.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh579700.07fu
title: SH579700.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3608032.08fu
title: SH3608032.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.b8e3yh
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Palestine, State of",
 "OccurrenceStatus is Present",
 "TaxonKey is Limodorum abortivum (L.) Sw."
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147740-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtoqqk
title: Occurrence Download

description: A dataset containing 4901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Icterus parisorum Bonaparte, 1838"
 ]
}

 The dataset includes 4901 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000269-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xayyu7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema gueilinense W.T.Wang"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041218-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52ummc
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tripidium rufipilum (Steud.) Welker, Voronts. & E.A.Kellogg)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 313 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111482-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13623249
title: Pretrained features for Ekman6 and VideoEmotion8 video emotion datasets
DOI: 10.5281/zenodo.13624583
title: Pretrained features for Ekman6 and VideoEmotion8 video emotion datasets
DOI: 10.5281/zenodo.13444158
title: Dataset for the article "A deep equivariant neural network approach for efficient hybrid density functional calculations"

description: Dataset files for DeepH-hybrid, containing structures and preprocessed Hamiltonian matrices computed with HSE06 hybrid functional and ABACUS DFT package.

Enclosed include:



The four datasets corresponding to the four DeepH-hybrid models mentioned in DeepH-hybrid's paper, each containing material structures and electronic structure properties of 

Basis set files for the ABACUS DFT package

Snapshot of a version of the additional codes utilized to preprocess hybrid DFT Hamiltonians (also available via this GitHub link)


Note only the additional codes of DeepH-hybrid is provided, and it may be used in combination with DeepH-E3 package for neural-network training. For additional details please refer to the "README" file of the code.
DOI: 10.5281/zenodo.13444159
title: Dataset for the article "A deep equivariant neural network approach for efficient hybrid density functional calculations"

description: Dataset files for DeepH-hybrid, containing structures and preprocessed Hamiltonian matrices computed with HSE06 hybrid functional and ABACUS DFT package.

Enclosed include:



The four datasets corresponding to the four DeepH-hybrid models mentioned in DeepH-hybrid's paper, each containing material structures and electronic structure properties of 

Basis set files for the ABACUS DFT package

Snapshot of a version of the additional codes utilized to preprocess hybrid DFT Hamiltonians (also available via this GitHub link)


Note only the additional codes of DeepH-hybrid is provided, and it may be used in combination with DeepH-E3 package for neural-network training. For additional details please refer to the "README" file of the code.
DOI: 10.15468/dl.74w4mt
title: Occurrence Download

description: A dataset containing 934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Triplostegia glandulifera Wall. ex DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 934 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111483-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjw469
title: Occurrence Download

description: A dataset containing 4433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pongamia pinnata (L.) Pierre)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4433 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111484-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du6tmt
title: Occurrence Download

description: A dataset containing 3089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tripterygium wilfordii Hook.fil.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3089 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111485-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwqtuy
title: Occurrence Download

description: A dataset containing 142792 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eptesicus serotinus (Schreber, 1774)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 142792 records from 2871 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39fwgn
title: Occurrence Download

description: A dataset containing 6301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inula montana"
 ]
}

 The dataset includes 6301 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015031-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19852539
title: Additional file 2 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 2.
DOI: 10.6084/m9.figshare.19852539.v1
title: Additional file 2 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 2.
DOI: 10.6084/m9.figshare.19852542
title: Additional file 3 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 3.
DOI: 10.6084/m9.figshare.19852542.v1
title: Additional file 3 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 3.
DOI: 10.6084/m9.figshare.19852545
title: Additional file 4 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 4.
DOI: 10.5281/zenodo.10722742
title: Bibliograhy of maps and historical sources focusing on the occurrence of mines and smelters in the area of old mining (northern Silesian Upland)

description: Report from the analysis of historical sources focusing on the occurrence of mines and smelters in the area under study and other areas with post-mining topography.

Data were used in:

Malik, I., Bohr, M., Wistuba, M., Raab, T., Bonhage, A., Verschoof-van der Vaart, W., Raab, A., Woskowicz-Slęzak, B., 2023. Multi-Period Ore Exploitation in Upper Silesia, Central Europe. J. Field Archaeol.

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project contract no. PPN/GIN/2020/1/00008/U/ /00001.
DOI: 10.5281/zenodo.10722743
title: Bibliograhy of maps and historical sources focusing on the occurrence of mines and smelters in the area of old mining (northern Silesian Upland)

description: Report from the analysis of historical sources focusing on the occurrence of mines and smelters in the area under study and other areas with post-mining topography.

Data were used in:

Malik, I., Bohr, M., Wistuba, M., Raab, T., Bonhage, A., Verschoof-van der Vaart, W., Raab, A., Woskowicz-Slęzak, B., 2023. Multi-Period Ore Exploitation in Upper Silesia, Central Europe. J. Field Archaeol.

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project contract no. PPN/GIN/2020/1/00008/U/ /00001.
DOI: 10.6084/m9.figshare.19852545.v1
title: Additional file 4 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 4.
DOI: 10.6084/m9.figshare.19852548
title: Additional file 5 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 5.
DOI: 10.6084/m9.figshare.15133959
title: Long non-coding RNA VCAN-AS1 promotes the malignant behaviors of breast cancer by regulating the miR-106a-5p-mediated STAT3/HIF-1α pathway

description: An accumulating number of studies have found that long noncoding RNAs (lncRNAs) participate in breast cancer (BC) development. LncRNA VCAN-AS1, a novel lncRNA, has been confirmed to regulate the progression of gastric cancer, while its role in BC is elusive. Here, our results illustrate that VCAN-AS1 is overexpressed in BC tissues and cells, while miR-106a-5p was downregulated and negatively correlated with VCAN-AS1. In addition, high VCAN-AS1 expression and low miR-106a-5p expression were closely correlated with poor overall survival in BC patients. Functional experiments confirmed that VCAN-AS1 overexpression notably accelerated BC cell proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) and enhanced tumor cell growth while also suppressing cell apoptosis. However, overexpression of miR-106a-5p had the opposite effects. In addition, rescue experiments confirmed that overexpression of VCAN-AS1 inhibited the tumor-suppressive effects mediated by miR-106a-5p. Mechanistically, through bioinformatics analysis, we found that VCAN-AS1 functions as a competitive endogenous RNA (ceRNA) of miR-106a-5p, which targets the 3ʹ untranslated region (UTR) of signal transducer and activator of transcription 3 (STAT3). Further experiments indicated that miR-106a-5p downregulated the STAT3/hypoxia-inducible factor-1alpha (HIF-1α) pathway, while activating the STAT3 pathway reversed miR-106a-5p-mediated antitumor effects. Collectively, our data suggest that VCAN-AS1 is upregulated in breast cancer and promotes its progression by regulating the miR-106a-5p-mediated STAT3/HIF-1α pathway. This study provides a new target for BC therapy.
DOI: 10.6084/m9.figshare.15133959.v1
title: Long non-coding RNA VCAN-AS1 promotes the malignant behaviors of breast cancer by regulating the miR-106a-5p-mediated STAT3/HIF-1α pathway

description: An accumulating number of studies have found that long noncoding RNAs (lncRNAs) participate in breast cancer (BC) development. LncRNA VCAN-AS1, a novel lncRNA, has been confirmed to regulate the progression of gastric cancer, while its role in BC is elusive. Here, our results illustrate that VCAN-AS1 is overexpressed in BC tissues and cells, while miR-106a-5p was downregulated and negatively correlated with VCAN-AS1. In addition, high VCAN-AS1 expression and low miR-106a-5p expression were closely correlated with poor overall survival in BC patients. Functional experiments confirmed that VCAN-AS1 overexpression notably accelerated BC cell proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) and enhanced tumor cell growth while also suppressing cell apoptosis. However, overexpression of miR-106a-5p had the opposite effects. In addition, rescue experiments confirmed that overexpression of VCAN-AS1 inhibited the tumor-suppressive effects mediated by miR-106a-5p. Mechanistically, through bioinformatics analysis, we found that VCAN-AS1 functions as a competitive endogenous RNA (ceRNA) of miR-106a-5p, which targets the 3ʹ untranslated region (UTR) of signal transducer and activator of transcription 3 (STAT3). Further experiments indicated that miR-106a-5p downregulated the STAT3/hypoxia-inducible factor-1alpha (HIF-1α) pathway, while activating the STAT3 pathway reversed miR-106a-5p-mediated antitumor effects. Collectively, our data suggest that VCAN-AS1 is upregulated in breast cancer and promotes its progression by regulating the miR-106a-5p-mediated STAT3/HIF-1α pathway. This study provides a new target for BC therapy.
DOI: 10.6084/m9.figshare.19852548.v1
title: Additional file 5 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 5.
DOI: 10.6084/m9.figshare.19852554
title: Additional file 6 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 6.
DOI: 10.6084/m9.figshare.19852554.v1
title: Additional file 6 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 6.
DOI: 10.6084/m9.figshare.19852557
title: Additional file 7 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 7.
DOI: 10.6084/m9.figshare.19852557.v1
title: Additional file 7 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 7.
DOI: 10.15124/df2951cb-d1ec-4b59-ba14-37937fea2ef4
title: Data for PSST paper 2023

description: Data for the paper 'The formation of O and H radicals in a pulsed discharge in atmospheric pressure helium with water vapour admixtures'
DOI: 10.6084/m9.figshare.19852560
title: Additional file 8 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 8.
DOI: 10.6084/m9.figshare.19852560.v1
title: Additional file 8 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 8.
DOI: 10.6084/m9.figshare.19852563
title: Additional file 9 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 9.
DOI: 10.6084/m9.figshare.19852563.v1
title: Additional file 9 of Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study

description: Additional File 9.
DOI: 10.17030/uclan.data.00000441
title: IN-MOST