cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/znrht9f46j.1
title: Mass lysis of predatory bacteria drives the enrichment of antibiotic resistance in soil microbial communities

description: Several studies have investigated the effects of antibiotics on the evolution and maintenance of antimicrobial resistance (AMR). However, the impact of microbial interactions in antibiotic-free environments on resistance in natural communities remains unclear. Here, we investigated whether the predatory bacterium M. xanthus, which can produce antimicrobials as a prey-killing mechanisms, influences the abundance of antibiotic-resistant bacteria in its local environment, regardless of active predation. We observed an association between the presence of M. xanthus in soil and the frequency of antibiotic-resistant bacteria. Additionally, culture-based and metagenomic analysis showed that co-culturing M. xanthus with soil-derived communities in liquid cultures enriched AMR among non-myxobacterial isolates. This is because the lysis of M. xanthus, triggered during the starvation phase of the co-culture experiments, releases diffusible growth inhibitory compounds that enrich pre-existing resistant bacteria. Furthermore, our results show that death during multicellular fruiting body formation, a starvation-induced stress response in M. xanthus that results in over 90% cell death, also releases growth inhibitory molecules that enrich resistant bacteria. Hence, the higher abundance of resistant bacteria in the soil communities, where M. xanthus can be detected, was because of the diffusible growth-inhibitory substances that were released due to the death of M. xanthus cells during fruiting body formation. Together, our findings demonstrate how the death of M. xanthus, an important aspect of its life cycle, can impact antibiotic resistomes in natural soil communities without the anthropogenic influx of antibiotics.
DOI: 10.17632/2p6mf2fn2f.1
title: Long-term Comparison of Maxillary Protraction with Hybrid Hyrax-Facemask vs Hybrid Hyrax-Mentoplate Protocols Using Alt-RAMEC: A 5-Year Randomized Controlled Trial

description: Background:
The study aimed to compare the short- and long-term effectiveness of hybrid Hyrax (HH) -Facemask (FM) and HH-mentoplate (MP) treatment protocols for maxillary protraction using Alt-RAMEC. 
Methods:
A single-center 2-arm parallel randomized controlled trial. 
Participants: 28 skeletal class III patients (female: 14, male: 14; average age: 9.7 ± 1.3 years;) were included
Interventions: Two treatment groups where protraction therapy was combined with Alt-RAMEC. Group 1: Facemask group (Hybrid Hyrax + Facemask) and Group 2: Mentoplate group (Hybrid Hyrax + Mentoplate).
Objective:
To compare skeletal and dental changes between groups using low dose computed tomography (CT) scan from which virtual lateral cephalograms were generated.
Outcome:
Outcomes include changes in Wits appraisal (primary outcome), and cephalometric analysis of skeletal and dental changes (secondary outcomes) at 1 year and 5 years after treatment initiation. 
Randomization: 28 patients were allocated to either treatment-protocols using sequentially numbered opaque, sealed envelopes. The randomization sequence was generated with a 1:1 allocation ratio. 
Blinding: Due to the nature of the trial, the operator and children could not be blinded to the treatment allocation. However, blinding was used when assessing the outcomes.
Results:
Follow-up: one patient was lost at the one-year follow-up and an additional three patients were lost at the 5-year follow-up.
Outcomes: Both treatment protocols effectively improved intermaxillary relationship. Wits measurements showed improvements of 4.42 mm (FM) and 2.86 mm (MP) at T1, decreasing slightly to 3.33 mm (FM) and 1.50 mm (MP) at T2. While vertical control and incisor inclination were comparable between groups long-term, short-term differences were noted in upper and lower incisor inclination. Results remained equally stable after five years (T2). 
Harms: minor harms were encountered with the anchor hooks (fracture or mucosal irritation), however none led to treatment cessation 
Conclusions:
Early class III treatment with HH + MP provided similar outcomes and stability to that of HH + FM suggesting that the choice between FM and MP should be based on individual patient factors rather than presumed mechanical advantages.
DOI: 10.17632/vrxv9xw3f9.1
title: Table S2

description: Table S2. Determined contents of potentially toxic elements for individual tobacco samples with coefficient of variation factors.
DOI: 10.17632/vrxv9xw3f9.2
title: Table S3

description: Table S3. Determined contents of potentially toxic elements for individual tobacco samples with coefficient of variation factors.
DOI: 10.5281/zenodo.14693411
title: Data for Section 3.2 of Evolutionary map of the universe (EMU): Observations of filamentary structures in the Abell S1136 galaxy cluster

description: This project contains the data that was used in Section 3.2 of Macgregor et al. 2024 (Bibcode:2024PASA...41...50M, DOI:10.1017/pasa.2024.36, or arXiv:2406.09709).

This data is used in the Reproducible script that will reproduce the Table 3 and Figure 2 of this paper.
DOI: 10.5281/zenodo.14693412
title: Data for Section 3.2 of Evolutionary map of the universe (EMU): Observations of filamentary structures in the Abell S1136 galaxy cluster

description: This project contains the data that was used in Section 3.2 of Macgregor et al. 2024 (Bibcode:2024PASA...41...50M, DOI:10.1017/pasa.2024.36, or arXiv:2406.09709).

This data is used in the Reproducible script that will reproduce the Table 3 and Figure 2 of this paper.
DOI: 10.17632/9rj7nd4j7g.1
title: Landslide Susceptibility Prediction

description: The landslide susceptibility prediction of the integrated framework that combines different unit extraction methods, which is stratified into five landslide susceptibility levels: very high (value = 5), high (value = 4), moderate (value = 3), low (value = 2), and very low (value = 1).
DOI: 10.17632/t934jfvtp2.1
title: Data in Engineering Applications of Computational Fluid Mechanics

description: Data on the supercritical hydrocarbon fuel jet impingement
DOI: 10.17632/x29dk92rtp
title: Sodium Ion Changes in the Skin of Rats Under High-Salt Diet Conditions and the Potential Mechanism of the Skin Acting as a Sodium Ion Buffer

description: This dataset investigates the impact of a high-salt diet on sodium ion changes in the skin of rats and explores the role of the skin as a sodium ion buffer. The study includes detailed measurements of sodium and potassium ion concentrations in blood, urine, and skin, as well as analyses of glycosaminoglycans (GAGs), macrophage activity, lymphangiogenesis, and protein expressions related to the TonEBP/VEGF-C/VEGFR-3 pathway. Male SD rats were divided into five groups with varying dietary salt levels, including a transitional group shifting from high- to low-salt intake. Key findings include increased skin sodium levels and GAG concentrations under high-salt conditions, along with upregulated macrophage and lymphatic vessel markers. The dataset supports the hypothesis that the skin acts as a dynamic sodium reservoir, buffering blood pressure and sodium load, with lymphatic remodeling as a crucial mechanism. Data includes raw measurements, statistical analyses, and experimental protocols for sodium/potassium quantification, ELISA, immunofluorescence, and Western blotting, offering comprehensive insights into sodium homeostasis and related physiological pathways.
DOI: 10.17632/x29dk92rtp.1
title: Sodium Ion Changes in the Skin of Rats Under High-Salt Diet Conditions and the Potential Mechanism of the Skin Acting as a Sodium Ion Buffer

description: This dataset investigates the impact of a high-salt diet on sodium ion changes in the skin of rats and explores the role of the skin as a sodium ion buffer. The study includes detailed measurements of sodium and potassium ion concentrations in blood, urine, and skin, as well as analyses of glycosaminoglycans (GAGs), macrophage activity, lymphangiogenesis, and protein expressions related to the TonEBP/VEGF-C/VEGFR-3 pathway. Male SD rats were divided into five groups with varying dietary salt levels, including a transitional group shifting from high- to low-salt intake. Key findings include increased skin sodium levels and GAG concentrations under high-salt conditions, along with upregulated macrophage and lymphatic vessel markers. The dataset supports the hypothesis that the skin acts as a dynamic sodium reservoir, buffering blood pressure and sodium load, with lymphatic remodeling as a crucial mechanism. Data includes raw measurements, statistical analyses, and experimental protocols for sodium/potassium quantification, ELISA, immunofluorescence, and Western blotting, offering comprehensive insights into sodium homeostasis and related physiological pathways.
DOI: 10.15468/dl.arufyt
title: Occurrence Download

description: A dataset containing 26833 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Falco biarmicus Temminck, 1825)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 26833 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004717-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/d88h42j6cg.1
title: LINF_030013100

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/v8r99n7b7t.1
title: LINF_030012300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.4gyfyp
title: Occurrence Download

description: A dataset containing 2762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Anthus nicholsoni Sharpe, 1884)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 2762 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004718-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/mc97knpj79.1
title: Predictive significance of multiple organ dysfunction severity in patients with severe ischemic stroke: a retrospective/prospective observational study

description: The aim of the study to assess the predictive significance of the severity of MOD in patients with severe AIS. The observational two-center retrospective-prospective study included 140 patients with severe AIS. . The SAPS II scale has the greatest predictive significance (area under curve (AUC) 0.719). Also, a satisfactory predictor value is characterized by a score on the SOFA scale for 1 day (AUC 0.706). In a comparative analysis of the predictor significance of the SAPS II scale in various pathogenetic variants, in the cardioembolic variant, the predictor significance was higher in comparison with the atherothrombotic variant of AIS (AUC 0.808 and 0.667, respectively). A three-dimensional regression model was obtained for the dependence of the probable mortality on the 28th day of the disease on the severity of stroke on the NIHSS scale on the first day and the dynamics of severity from day 1 to day 5, measured on the SOFA scale.
DOI: 10.17632/mc97knpj79.2
title: Predictive significance of multiple organ dysfunction severity in patients with severe ischemic stroke: a prospective observational study

description: The aim of the study to assess the predictive significance of the severity of MOD in patients with severe AIS. The observational two-center prospective study included 140 patients with severe AIS. The SAPS II scale has the greatest predictive significance (area under curve (AUC) 0.719). Also, a satisfactory predictor value is characterized by a score on the SOFA scale for 1 day (AUC 0.706). In a comparative analysis of the predictor significance of the SAPS II scale in various pathogenetic variants, in the cardioembolic variant, the predictor significance was higher in comparison with the atherothrombotic variant of AIS (AUC 0.808 and 0.667, respectively). A three-dimensional regression model was obtained for the dependence of the probable mortality on the 28th day of the disease on the severity of stroke on the NIHSS scale on the first day and the dynamics of severity from day 1 to day 5, measured on the SOFA scale.
DOI: 10.15468/dl.jfu2mn
title: Occurrence Download

description: A dataset containing 5694182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Continent derived from coordinates, The taxon concept ID was not used in backbone matching)",
 "IucnRedListCategory is LC",
 "TaxonKey is Hirundo rustica Linnaeus, 1758",
 "Year 2020-2025"
 ]
}

 The dataset includes 5694182 records from 1898 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004631-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3o0sja
title: Occurrence Download

description: A dataset containing 647826 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cupressaceae"
 ]
}

 The dataset includes 647826 records from 1134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002772-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lyzw2s
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum suffruticosum subsp. ortegae (Planch.) Rivas Goday & Borja ex Rivas Mart."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002787-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8fr89
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachypodium"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002782-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pogjow
title: Occurrence Download

description: A dataset containing 174014 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 174014 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002777-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eavg7q
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Conraua goliath (Boulenger, 1906)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 102 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002781-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruwafm
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum suffruticosum subsp. crespoi Mart.Labarga & Muñoz Garm."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002780-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwrn08
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum suffruticosum var. angustifolium Lange"
 ]
}

 The dataset includes 162 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002783-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9izre
title: Occurrence Download

description: A dataset containing 2813 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum suffruticosum subsp. appressum (Caball.) Rivas Mart."
 ]
}

 The dataset includes 2813 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002779-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/1k36pi
title: BF MTU.mrk.json
DOI: 10.57745/6bgd8f
title: Segmentation.seg.nrrd
DOI: 10.57745/h6rskt
title: SM MTU.mrk.json
DOI: 10.57745/7cdohv
title: IJ4.nrrd
DOI: 10.57745/opd88g
title: ST MTU.mrk.json
DOI: 10.57745/btxcdy
title: Segmentation.seg.nrrd
DOI: 10.57745/dz7nbu
title: BF MTU.mrk.json
DOI: 10.57745/zbkedz
title: SM MTU.mrk.json
DOI: 10.57745/qec96c
title: IJ5.nrrd
DOI: 10.57745/k0hrdk
title: Segmentation.seg.nrrd
DOI: 10.57745/tqipse
title: GL MTU.mrk.json
DOI: 10.57745/exsfx4
title: GM MTU.mrk.json
DOI: 10.57745/civany
title: GAS5.nrrd
DOI: 10.57745/qq2zqw
title: Segmentation.seg.nrrd
DOI: 10.57745/vfrzwo
title: GL MTU.mrk.json
DOI: 10.57745/uihajl
title: GM MTU.mrk.json
DOI: 10.57745/eafgnj
title: GAS1.nrrd
DOI: 10.57745/lbcdpb
title: GM MTU.mrk.json
DOI: 10.5281/zenodo.16847475
title: Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - processed data

description: Emerging imaging spatial transcriptomics (iST) platforms and coupled analytical methods can recover cell-to-cell interactions, groups of spatially covarying genes, and gene signatures associated with pathological features, and are thus particularly well-suited for applications in formalin fixed paraffin embedded (FFPE) tissues. Here, we benchmarked the performance of three commercial iST platforms—10X Xenium, Vizgen MERSCOPE, and Nanostring CosMx—on serial sections from tissue microarrays (TMAs) containing 17 tumor and 16 normal tissue types for both relative technical and biological performance. On matched genes, we findound that Xenium consistently generatesd higher transcript counts per gene without sacrificing specificity. Xenium and CosMx measured RNA transcripts in concordance with orthogonal single-cell transcriptomics.  All three platforms can perform spatially resolved cell typing with varying degrees of sub-clustering capabilities, with Xenium and CosMx finding slightly more clusters than MERSCOPE, albeit with different false discovery rates and cell segmentation error frequencies. Taken together, our analyses provide a comprehensive benchmark to guide the choice of iST method as researchers design studies with precious samples in this rapidly evolving field.
DOI: 10.5281/zenodo.16848917
title: Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - processed data

description: Emerging imaging spatial transcriptomics (iST) platforms and coupled analytical methods can recover cell-to-cell interactions, groups of spatially covarying genes, and gene signatures associated with pathological features, and are thus particularly well-suited for applications in formalin fixed paraffin embedded (FFPE) tissues. Here, we benchmarked the performance of three commercial iST platforms—10X Xenium, Vizgen MERSCOPE, and Nanostring CosMx—on serial sections from tissue microarrays (TMAs) containing 17 tumor and 16 normal tissue types for both relative technical and biological performance. On matched genes, we findound that Xenium consistently generatesd higher transcript counts per gene without sacrificing specificity. Xenium and CosMx measured RNA transcripts in concordance with orthogonal single-cell transcriptomics.  All three platforms can perform spatially resolved cell typing with varying degrees of sub-clustering capabilities, with Xenium and CosMx finding slightly more clusters than MERSCOPE, albeit with different false discovery rates and cell segmentation error frequencies. Taken together, our analyses provide a comprehensive benchmark to guide the choice of iST method as researchers design studies with precious samples in this rapidly evolving field.
DOI: 10.57745/ak74wb
title: GL MTU.mrk.json
DOI: 10.57745/dqv0au
title: Segmentation.seg.nrrd
DOI: 10.57745/dd6joj
title: GL MTU.mrk.json
DOI: 10.57745/6zgfwk
title: GM MTU.mrk.json
DOI: 10.57745/rf4g3d
title: Segmentation.seg.nrrd
DOI: 10.57745/xajo5f
title: GAS2b.nrrd
DOI: 10.57745/jvaxht
title: GL MTU.mrk.json
DOI: 10.15468/dl.jy52bf
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "Geometry POLYGON((-13.23149 9.93666,152.23149 9.93666,152.23149 76.06334,-13.23149 76.06334,-13.23149 9.93666))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Berberis sibirica"
 ]
}

 The dataset includes 162 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006872-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/vxfnny
title: GM MTU.mrk.json
DOI: 10.57745/phmync
title: Segmentation.seg.nrrd
DOI: 10.57745/snvj80
title: GAS3.nrrd
DOI: 10.57745/ndlcec
title: GL MTU.mrk.json
DOI: 10.5281/zenodo.17132651
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Johann Wilhelm Meigen, http://www.wikidata.org/entity/Q77463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q77463
DOI: 10.5281/zenodo.17132652
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Johann Wilhelm Meigen, http://www.wikidata.org/entity/Q77463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q77463
DOI: 10.57745/umqrrt
title: GM MTU.mrk.json
DOI: 10.57745/8nmspv
title: Segmentation.seg.nrrd
DOI: 10.57745/jvcyo2
title: GAS4.nrrd
DOI: 10.57745/wvdpyp
title: RF MTU.mrk.json
DOI: 10.57745/ckxyil
title: RF1.nrrd
DOI: 10.57745/ddkgwg
title: RF2.nrrd