cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mgnug6
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margarites refulgens (E.A.Smith, 1907)"
 ]
}

 The dataset includes 352 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087670-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmkces
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ancylopsetta dendritica Gilbert, 1890"
 ]
}

 The dataset includes 72 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdufxf
title: Occurrence Download

description: A dataset containing 8970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Persicaria perfoliata (L.) H.Gross"
 ]
}

 The dataset includes 8970 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138325-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkh4kb
title: Occurrence Download

description: A dataset containing 762265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 762265 records from 780 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198335-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzazgt
title: Occurrence Download

description: A dataset containing 66390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laminaria J.V.F.Lamouroux, 1813"
 ]
}

 The dataset includes 66390 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066052-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpxgid
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lerwa lerwa (Hodgson, 1833)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ahnwz
title: Occurrence Download

description: A dataset containing 11956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pantherophis obsoletus (Say, 1823)"
 ]
}

 The dataset includes 11956 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066051-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwayyf
title: Occurrence Download

description: A dataset containing 6739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus mongolica Fisch. ex Ledeb."
 ]
}

 The dataset includes 6739 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138323-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wetac
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixobrychus sturmii (Wagler, 1827)",
 "Country is South Africa"
 ]
}

 The dataset includes 578 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9pvu4q
title: Occurrence Download

description: A dataset containing 38908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1000-1980",
 "HasCoordinate is true",
 "TaxonKey is Tringa totanus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38908 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019250-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euh5qc
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium hookerianum Nutt."
 ]
}

 The dataset includes 839 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138331-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39y6ub
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum drymoglossum Maxim."
 ]
}

 The dataset includes 110 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rvr54
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Prunus schneideriana Koehne"
 ]
}

 The dataset includes 87 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138333-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.849paf
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Weed Population Genetics"
 ]
}

 The dataset includes 125 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008065-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.roksjo
title: Occurrence Download

description: A dataset containing 1744 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum parishii A.Heller"
 ]
}

 The dataset includes 1744 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g586n4
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Trametes versicolor (L.) Lloyd"
 ]
}

 The dataset's 4 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082497-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjvbt8
title: Occurrence Download

description: A dataset containing 1419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pyrus pashia Buch.-Ham. ex D.Don"
 ]
}

 The dataset includes 1419 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138351-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21301449
title: Additional file 3 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 3: Supplementary Table S1. Seven databases showed the annotation results of the full-length transcripts.
DOI: 10.6084/m9.figshare.21301449.v1
title: Additional file 3 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 3: Supplementary Table S1. Seven databases showed the annotation results of the full-length transcripts.
DOI: 10.6084/m9.figshare.21301451
title: Additional file 2 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 2: Table S2. Cellular annotation and clinical characteristic of SMC and KUL3 cohort. Relate to Figure 1 and Figure S1.
DOI: 10.6084/m9.figshare.21301451.v1
title: Additional file 2 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 2: Table S2. Cellular annotation and clinical characteristic of SMC and KUL3 cohort. Relate to Figure 1 and Figure S1.
DOI: 10.6084/m9.figshare.21301454
title: Additional file 3 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 3: Table S3. Representative marker genes used for cell type annotation.
DOI: 10.25392/leicester.data.21346935
title: Bench marking the assembly of viromes using Illumina, PacBio and Nanopore reads

description: Illumina PacBio ONT Flye Unicycler wtdbg2 (Redbean) 
Sequencing of a mock community of bacteriophages with three different sequencing technologies , in triplicate.
Reads were assembled with multiple different assembly algorithms including 
Assembled contigs were compared to the known input phage genomes to calculate completeness of genomes 
<br>
All raw reads were deposisted in the ENA.
The attached file contains assembled contigs. 
Files are named in the following manner 
Library Number, Sequencing type , assembler used 
eg  <em>lib1_PacBio_wtdbg2.fa</em>
Library 1 sequenced using PacBio and assembed with wtdb2 
<br>
Data Update 
<br>
With advances in base calling the ONT data was re-basecalled.  
<br>
re-called ONT data is in  ONT_recalled.tar.gz and also avalible in the SRA . 
<br>
<br>
<br>
<br>
<br>
DOI: 10.6084/m9.figshare.21301454.v1
title: Additional file 3 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 3: Table S3. Representative marker genes used for cell type annotation.
DOI: 10.25392/leicester.data.21346935.v2
title: Bench marking the assembly of viromes using Illumina, PacBio and Nanopore reads

description: Illumina PacBio ONT Flye Unicycler wtdbg2 (Redbean) 
Sequencing of a mock community of bacteriophages with three different sequencing technologies , in triplicate.
Reads were assembled with multiple different assembly algorithms including 
Assembled contigs were compared to the known input phage genomes to calculate completeness of genomes 
<br>
All raw reads were deposisted in the ENA.
The attached file contains assembled contigs. 
Files are named in the following manner 
Library Number, Sequencing type , assembler used 
eg  <em>lib1_PacBio_wtdbg2.fa</em>
Library 1 sequenced using PacBio and assembed with wtdb2 
<br>
Data Update 
<br>
With advances in base calling the ONT data was re-basecalled.  
<br>
re-called ONT data is in  ONT_recalled.tar.gz and also avalible in the SRA . 
<br>
<br>
<br>
<br>
<br>
DOI: 10.25392/leicester.data.21346935.v1
title: Bench marking the assembly of viromes using Illumina, PacBio and Nanopore reads

description: Sequencing of a mock community of bacteriophages with three different sequencing technologies , in triplicate.

 Illumina
 PacBio
 ONT

Reads were assembled with multiple different assembly algorithms including 

 Flye
 Unicycler
 wtdbg2 (Redbean)

Assembled contigs were compared to the known input phage genomes to calculate completeness of genomes 
<br>
All raw reads were deposisted in the ENA.
The attached file contains assembled contigs. 
Files are named in the following manner 
Library Number, Sequencing type , assembler used 
eg  <em>lib1_PacBio_wtdbg2.fa</em>
Library 1 sequenced using PacBio and assembed with wtdb2 
<br>
<br>
<br>
<br>
DOI: 10.6084/m9.figshare.21301457
title: Additional file 4 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 4: Table S4. Signature matrix for CIBERSORTx and infered cellular fractions of TCGA-COADREAD. Related to Figure 2.
DOI: 10.6084/m9.figshare.21301457.v1
title: Additional file 4 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 4: Table S4. Signature matrix for CIBERSORTx and infered cellular fractions of TCGA-COADREAD. Related to Figure 2.
DOI: 10.6084/m9.figshare.21301458
title: Additional file 4 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 4: Supplementary Table S2. Coding ability prediction results of the full-length transcripts.
DOI: 10.6084/m9.figshare.21301458.v1
title: Additional file 4 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 4: Supplementary Table S2. Coding ability prediction results of the full-length transcripts.
DOI: 10.6084/m9.figshare.21301460
title: Additional file 5 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 5: Table S5. Biological functional difference between colorectal cancer cells and adjacent normal epithelia in SMC and KUL3 cohort. Related to Figure 3A and S3A.
DOI: 10.6084/m9.figshare.21301460.v1
title: Additional file 5 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 5: Table S5. Biological functional difference between colorectal cancer cells and adjacent normal epithelia in SMC and KUL3 cohort. Related to Figure 3A and S3A.
DOI: 10.6084/m9.figshare.21301461
title: Additional file 5 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 5: Supplementary Table S3. Transcription factor families and transcription factor genes.
DOI: 10.6084/m9.figshare.21301461.v1
title: Additional file 5 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 5: Supplementary Table S3. Transcription factor families and transcription factor genes.
DOI: 10.6084/m9.figshare.21301463
title: Additional file 6 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 6: Table S6. Identified meta-programs and its biological process annotation. Related to Figure 3F, Figure S2B.
DOI: 10.6084/m9.figshare.21301463.v1
title: Additional file 6 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 6: Table S6. Identified meta-programs and its biological process annotation. Related to Figure 3F, Figure S2B.
DOI: 10.6084/m9.figshare.21301464
title: Additional file 6 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 6: Supplementary Table S4. Differential expression of genes involved in PS, PM and TM pathways.
DOI: 10.6084/m9.figshare.21301464.v1
title: Additional file 6 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 6: Supplementary Table S4. Differential expression of genes involved in PS, PM and TM pathways.
DOI: 10.6084/m9.figshare.21301466
title: Additional file 7 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 7: Table S7. Key resource table.
DOI: 10.6084/m9.figshare.21301466.v1
title: Additional file 7 of Decoding the colorectal cancer ecosystem emphasizes the cooperative role of cancer cells, TAMs and CAFsin tumor progression

description: Additional file 7: Table S7. Key resource table.
DOI: 10.6084/m9.figshare.21301467
title: Additional file 7 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 7: Supplementary Table S5. Differentially expressed genes between HS2 and YS1.
DOI: 10.6084/m9.figshare.21301467.v1
title: Additional file 7 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 7: Supplementary Table S5. Differentially expressed genes between HS2 and YS1.
DOI: 10.6084/m9.figshare.21301470
title: Additional file 8 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 8: Supplementary Table S6. KEGG pathways of DEGs between HS2 and YS1.
DOI: 10.6084/m9.figshare.21301470.v1
title: Additional file 8 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 8: Supplementary Table S6. KEGG pathways of DEGs between HS2 and YS1.
DOI: 10.6084/m9.figshare.19204320
title: Additional file 1 of Identification of quantitative trait loci (QTLs) and candidate genes of seed Iron and zinc content in soybean [Glycine max (L.) Merr.]

description: Additional file 1: Table S1. The significant LOD thresholds were determined by 1000permutations (p &lt; 0.05). Table S2. Overall genes related toseed Fe and Zn content in three major QTL regions. Table S3. GeneOntology (GO) enrichment analysis of overall genes in three major QTL regions. TableS4. Significant SNV mutations and mutant genes between Guizao1 and B13 inthree major QTLs. Table S5. Significant InDel mutations and mutant genesbetween Guizao1 and B13 in three major QTLs. Table S6. Expression analysisof mutant genes in soybean in different developmental stages and tissues. Table S7. Variations inputative candidate genes within qFC7, qZC3, and qZC20. Table S8.Raw phenotyping data of GB RIL population and two parents collected in four environments.
DOI: 10.6084/m9.figshare.19204320.v1
title: Additional file 1 of Identification of quantitative trait loci (QTLs) and candidate genes of seed Iron and zinc content in soybean [Glycine max (L.) Merr.]

description: Additional file 1: Table S1. The significant LOD thresholds were determined by 1000permutations (p &lt; 0.05). Table S2. Overall genes related toseed Fe and Zn content in three major QTL regions. Table S3. GeneOntology (GO) enrichment analysis of overall genes in three major QTL regions. TableS4. Significant SNV mutations and mutant genes between Guizao1 and B13 inthree major QTLs. Table S5. Significant InDel mutations and mutant genesbetween Guizao1 and B13 in three major QTLs. Table S6. Expression analysisof mutant genes in soybean in different developmental stages and tissues. Table S7. Variations inputative candidate genes within qFC7, qZC3, and qZC20. Table S8.Raw phenotyping data of GB RIL population and two parents collected in four environments.
DOI: 10.6084/m9.figshare.21301473
title: Additional file 9 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 9: Supplementary Table S7. Primers for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.21301473.v1
title: Additional file 9 of De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa

description: Additional file 9: Supplementary Table S7. Primers for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.19204323
title: Additional file 2 of Identification of quantitative trait loci (QTLs) and candidate genes of seed Iron and zinc content in soybean [Glycine max (L.) Merr.]

description: Additional file 2: Fig. S1. The significant differences between Guizao1 and B13 for seed Fe andZn content Histogramsshowing the significant differences between Guizao1 and B13 for seed Fe and Zn content in thefour environments, according to the ANOVA analysis denoted asfollows: **p &lt; 0.01. Fig. S2. The expression patterns analysis of mutant genes from three major QTLs Heatmap showing the expression patternsof mutant genes from three major QTLsamong the different tissues during soybean development stages based on publicRNA-seq data from SoyBase. DAF: days after flowering. a, b, and c representmutant genes from qZC3, qFC7, and qZC20, respectively.
DOI: 10.6084/m9.figshare.19204323.v1
title: Additional file 2 of Identification of quantitative trait loci (QTLs) and candidate genes of seed Iron and zinc content in soybean [Glycine max (L.) Merr.]

description: Additional file 2: Fig. S1. The significant differences between Guizao1 and B13 for seed Fe andZn content Histogramsshowing the significant differences between Guizao1 and B13 for seed Fe and Zn content in thefour environments, according to the ANOVA analysis denoted asfollows: **p &lt; 0.01. Fig. S2. The expression patterns analysis of mutant genes from three major QTLs Heatmap showing the expression patternsof mutant genes from three major QTLsamong the different tissues during soybean development stages based on publicRNA-seq data from SoyBase. DAF: days after flowering. a, b, and c representmutant genes from qZC3, qFC7, and qZC20, respectively.