cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4j0zpc8dp
title: Restoring function: positive responses of carbon and nitrogen to 20 years of hydrologic restoration in montane meadows

description: Montane meadows are highly productive ecosystems that contain high
 densities of soil carbon (C) and nitrogen (N). However, anthropogenic
 disturbances that lead to channel incision and disconnected floodplain
 hydrology have altered the C balance of many meadows, converting them from
 net C sinks to net sources of C to the atmosphere. Restoration efforts
 designed to reconnect floodplain hydrology may slow rates of soil C loss
 from degraded meadows and restore conditions for C sequestration and N
 immobilization, yet questions remain about the long-term impact of such
 efforts. Here, we used a 22-year meadow restoration chronosequence to
 measure the decadal impact of hydrologic restoration on above- and
 belowground C and N stocks and concentrations. Increases in herbaceous
 vegetation biomass preceded changes in soil C stocks, with the largest
 gains occurring belowground. Root biomass (0-15 cm) increased at a rate of
 270.3 g m-2 y-1 and soil C stocks (0-15 cm) increased by 232.9 g C m-2 y-1
 across the chronosequence. Increases in soil C concentration (2.99 g C
 kg-1 y-1) were tightly coupled with increases in soil N concentration
 (0.21 g N kg-1 y-1) and soil C:N did not vary with time since restoration.
 Fourier Transformed Infrared Spectroscopy results show that the fraction
 of labile aliphatic C-H and carboxylate C-O (COO) compounds in the soil
 increased with age of restoration and were positively correlated with soil
 C and N concentration. Our results demonstrate that restoration of
 floodplain hydrology in montane meadows has significant impacts on
 belowground C and N stocks, soil C and N concentration, and soil C
 chemistry within the first two decades following restoration.
DOI: 10.5061/dryad.vhhmgqnwb
title: Data from: Simple metrics to characterize inter-individual and temporal variation in habitat selection behaviour

description: 1. Individual variation in habitat selection and movement behavior is
 receiving growing attention, but primarily with respect to characterizing
 behaviors in different contexts as opposed to decomposing structure in
 behavior within populations. This focus may be limiting advances in
 understanding the diversity of individual behavior and its influence on
 population organization. We propose a framework for characterizing
 variation in space-use behavior with the aim of advancing interpretation
 of its form and function. 2. Using outputs from integrated Step Selection
 Analyses of 20 years of telemetry data from African elephants (Loxodonta
 Africana), we developed four metrics characterizing differentiation in
 resource selection behavior within a population [specialization (magnitude
 of the response independent of direction), heterogeneity (inter-individual
 variation), consistency (temporal shift in response) and reversal
 (frequency of directional changes in the response)]. 3. We contrast
 insight from the developed metrics relative to the mean population
 response using an example focused on two covariates. We then expanded this
 contrast by evaluating if the metrics identify structurally important
 information on seasonal shifts in resource selection behaviors in addition
 to that provided by mean selection coefficients through Principal
 Component Analyses (PCAs) and a random forest classification. 4. The
 simplified example highlighted that for some covariates focusing on the
 population average failed to capture complex individual variation in
 behaviors. The PCAs revealed that the developed metrics provided
 additional information in explaining the patterns in elephant selection
 beyond that offered by population average covariate values. For elephants,
 specialization and heterogeneity were informative, with specialization
 often being a better descriptor of differences in seasonal resource
 selection behavior than population average responses. Summarizing these
 metrics spatially and temporally, we illustrate how these metrics can
 provide insights on overlooked aspects of animal behavior. 5. Our work
 offers a new approach in how we conceptualize variation in space-use
 behavior (i.e., habitat selection and movement) by providing ways of
 encapsulating variation that enables diagnoses of the drivers of
 individual level variability in a population. The developed metrics
 explicitly distill how variation in a behavior is structured among
 individuals and over time which could facilitate comparative work across
 time, populations, or strata within populations.
DOI: 10.5061/dryad.jh9w0vtdj
title: Energetic mismatch induced by warming decreases leaf litter decomposition by aquatic detritivores

description: 1. The balance of energetic losses and gains is of paramount importance
 for understanding and predicting the persistence of populations and
 ecosystem processes in a rapidly changing world. Previous studies
 suggested that metabolic rate often increases faster with warming than
 resource ingestion rate, leading to an energetic mismatch at high
 temperature. However, little is known about the ecological consequences of
 this energetic mismatch for population demography and ecosystem functions.
 2. Here, we combined laboratory experiments and modeling to investigate
 the energetic balance of a stream detritivore (Gammarus fossarum) along a
 temperature gradient and the consequences for detritivore populations and
 organic matter decomposition. 3. We experimentally measured the energetic
 losses (metabolic rate) and supplies (ingestion rate) of Gammarus and we
 modeled the impact of rising temperatures and changes in Gammarus body
 size induced by warming on population dynamics and benthic organic matter
 dynamics in freshwater systems. 4. Our experimental results indicated an
 energetic mismatch in a Gammarus population where losses via metabolic
 rate increase faster than supplies via food ingestion with warming, which
 translated in a decrease of energetic efficiency with temperature rising
 from 5 to 20 °C. Moreover, our consumer-resource model predicts a decrease
 in the biomass of Gammarus population with warming, associated with lower
 maximum abundances and steeper abundance decreases after biomass annual
 peaks. These changes resulted in a decrease of leaf litter decomposition
 rate and thus longer persistence of leaf litter standing stock over years
 in the simulations. In addition, Gammarus body size reductions led to
 shorter persistence for both leaf litter and Gammarus biomasses at low
 temperature and the opposite trend at high temperature, revealing that
 body size reduction was weakening the effect of temperature on resource
 and consumer persistence. 5. Our model contributes to identifying the
 mechanisms that explain how thermal effects at the level of individuals
 may cascade through trophic interactions and influence important ecosystem
 processes. Considering the balance of physiological processes is crucial
 to improve our ability to predict the impact of climate change on carbon
 stocks and ecosystem functions.
description: The data set contains rows corresponding to each gammaridae
 individuals and columns corresponding to the variables including: the
 identity of individuals (Indiv), the metabolic rate (Respi), the ingestion
 rate (Nutri), the temperature in Celsius degree (Temp), the temperature
 (Temp), the body mass (Masse).
 Data_Mismatch.txt
DOI: 10.5061/dryad.hhmgqnkjh
title: What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?

description: Little is known about the evolution of cold tolerance in polar plant
 species and how they differ from temperate relatives. To gain insight into
 their biology and the evolution of cold tolerance, we compared the
 molecular basis of cold response in three Arctic Brassicaceae species. We
 conducted a comparative time series experiment to examine transcriptional
 responses to low temperature. RNA was sampled at 22 °C, and after 3h, 6h,
 and 24h at 2 °C. We then identified sets of genes that were differentially
 expressed in response to cold and compared them between species, as well
 as to published data from the temperate Arabidopsis thaliana. Most
 differentially expressed genes were species-specific, but a significant
 portion of the cold response was also shared among species. Among
 thousands of differentially expressed genes, ~200 were shared among the
 three Arctic species and A. thaliana, while ~100 were exclusively shared
 among the three Arctic species. Our results show that cold response
 differs markedly between Arctic Brassicaceae species, but likely builds on
 a conserved basis found across the family. They also confirm that highly
 polygenic traits such as cold tolerance may show little repeatability in
 their patterns of adaptation. 
description: These transcriptomes were generated for a comparative study of
 cold response in Arctic Brassicaceae. Each transcriptome is generated from
 16 samples of leaf RNA, sampled at different time points and
 temperatures: 4 replicates at 0h (22
 °C) 4 replicates at 3h with 2 °C
 4 replicates at 6h with 2 °C 4 replicates
 at 24h with 2 °C One replicate = one pot
 with several seeds from genetically identical plants (all plants were
 siblings derived from selfed parents, and selfing is assumed to be the
 predominant mode of reproduction in the wild). After RNA sequencing on an
 Illumina HiSeq 3000, we did de novo transcriptome assemblies using trinity
 https://github.com/trinityrnaseq/trinityrnaseq/wiki with the integrated trimmomatic option.  After assembly, we used EnTAP https://entap.readthedocs.io/en/latest/ to filter the raw transcriptomes to reduce inflated transcript estimates (both raw and filtered transcriptomes are deposited).  The final transcriptomes are all over &gt;90 % complete in terms of BUSCOs.
DOI: 10.15468/dl.b2tsbm
title: Occurrence Download

description: A dataset containing 104006 records in GBIF matching the query:
SELECT
 '471' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= -6.681438016390939
 AND decimalLongitude &lt;= 0.0
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 104006 records were derived from 919 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003098-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11907647
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.7vkf2r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroxiphia linearis (Bonaparte, 1838)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 2019",
 "Month is greater than or equal to April",
 "Month is less than or equal to September",
 "EventDate is not null",
 "Country is United States of America",
 "Geometry POLYGON((-63 22, -63 51, -126 51, -126 22, -63 22))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013901-250515123054153/datasets/export for details.
DOI: 10.15468/dl.5np3r4
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Continent is Africa",
 "Country is Benin",
 "DatasetKey is one of (Study of medicinal and energy plants from Benin, A global database for the distributions of crop wild relatives, Savanna herbaceous vegetation, Lake Mburo National Park, Uganda, Census of plant species in Bonou forest reserve (Southern Benin), Ethnobotanical surveys species in Benin (West Africa), Floral inventory of the natural pastures of the municipalities bordering the W Transboundary Biosphere Reserve in the Alibori department and the municipalities of Dassa_Zoume and Glazoué in the Collines department (Benin)., Census of species recorded during phytosociological surveys in Benin, Census of the flora of Benin, Inventaire des espèces végétales dans la forêt naturelle et les jachères de la Lama, Recensement des espèces en vue de l'élaboration du répertoire des forêts sacrées, forêts galeries, savanes et autres formation floristique du Bénin.)",
 "OccurrenceStatus is Present",
 "TaxonKey is Afzelia africana Sm. ex Pers.",
 "Year 1984-2025"
 ]
}

 The dataset includes 49 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007321-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn644q
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypoptopoma brevirostratum)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024872-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18431686
title: Molecular dataset for Four new species and a new record of Panaeolus from China, with notes on the taxonomy of Panaeolus rhombispermus

description: Concatenated alignment of ITS, nrLSU, tef1-α, and rpb2 sequences for Panaeolus phylogeny, used in IQ-TREE and MrBayes analyses.
DOI: 10.5281/zenodo.18431687
title: Molecular dataset for Four new species and a new record of Panaeolus from China, with notes on the taxonomy of Panaeolus rhombispermus

description: Concatenated alignment of ITS, nrLSU, tef1-α, and rpb2 sequences for Panaeolus phylogeny, used in IQ-TREE and MrBayes analyses.
DOI: 10.15468/dl.xrqqfb
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siniperca chuatsi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 101 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002020-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek4mrk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colletotrichum plurivorum",
 "TaxonKey is Colletotrichum gloeosporioides",
 "TaxonKey is Colletotrichum fructicola",
 "TaxonKey is Colletotrichum siamense",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002021-260129131611470/datasets/export for details.
DOI: 10.15468/dl.7njumt
title: Occurrence Download

description: A dataset containing 5152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parioglossus multiradiatus, Pseudolaguvia foveolata, Erethistoides sicula, Bryconamericus turiuba, Hemiancistrus votouro, Hemiancistrus meizospilos, Laimosemion kirovskyi, Deuterodon aphos, Bryconamericus patriciae, Bryconamericus ecai, Gastromyzon ocellatus, Betta ibanorum, Toxotes kimberleyensis, Dawkinsia tambraparniei, Dawkinsia exclamatio, Brachyplatystoma capapretum, Homaloptera parclitella, Caelatoglanis zonatus, Dawkinsia singhala, Dawkinsia assimilis, Clarias sulcatus, Erromyzon compactus, Schistura reticulata, Percichthys chilensis, Percichthys laevis, Noturus gladiator, Asprocottus minor, Akysis vespa, Trichomycterus diabolus, Ituglanis bambui, Ituglanis epikarsticus, Ituglanis ramiroi, Brycon gouldingi, Pseudecheneis crassicauda, Pseudecheneis serracula, Pseudanos winterbottomi, Fundulopanchax gresensi, Micronemacheilus zispi, Batasio sharavatiensis, Leiocassis aculeatus, Mystus alasensis, Batasio merianiensis, Callichthys serralabium, Psalidodon hermosus, Moxostoma mascotae, Moxostoma pisolabrum, Moxostoma albidum, Micropterus floridanus, Cottocomephorus alexandrae, Clarias nigricans, Horaglanis alikunhii, Conta pectinata, Moenkhausia bonita, Girardinichthys ireneae, Steatogenys ocellatus, Brachyhypopomus jureiae, Gymnotus curupira, Gymnotus obscurus, Gymnotus varzea, Schismatogobius vitiensis, Salmo akairos, Rhamdia guasarensis, Pimelodella spelaea, Etheostoma susanae, Percina fulvitaenia, Etheostoma gutselli, Trichomycterus gorgona, Ituglanis nebulosus, Silvinichthys bortayro, Malapterurus melanochir, Malapterurus occidentalis, Malapterurus teugelsi, Paradoxoglanis caudivittatus, Paradoxoglanis cryptus, Paradoxoglanis parvus, Mormyrus hildebrandti, Pollimyrus marianne, Monopterus digressus, Kiunga bleheri, Kryptopterus paraschilbeides, Silurus duanensis, Wallago micropogon, Glyptothorax sufii, Oreoglanis macronemus, Mastacembelus kakrimensis, Aphyolebias claudiae, Aphyolebias manuensis, Aphyolebias schleseri, Moema quiii, Melanorivulus parnaibensis, Laimosemion romeri, Atlantirivulus simplicis, Hypsolebias carlettoi, Anablepsoides caurae, Austrolebias arachan, Bryconamericus indefessus, Bryconamericus ytu, Andromakhe latens, Psalidodon chico, Hyphessobrycon auca)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5152 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002023-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyyrz9
title: Occurrence Download

description: A dataset containing 25147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((80.202 17.191,81.323 17.191,81.323 18.239,80.202 18.239,80.202 17.191))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25147 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002022-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp4z4z
title: Occurrence Download

description: A dataset listing the 151 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.12.1.1_1",
 "Geometry POLYGON((-1.17356 47.40931,-1.18384 47.39008,-1.16854 47.37705,-1.16111 47.37069,-1.15061 47.37457,-1.14996 47.39247,-1.16832 47.41037,-1.17356 47.40931))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset's 151 records were derived from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002015-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5167/uzh-283597
title: Cephalozia albescens (Hook.) Dumort.
DOI: 10.25326/80
title: IAGOS-DM-MOCAGE - L4

description: With their multi-decadal timescale and their geographical coverage reaching the hemispheric scale, the IAGOS measurements are an essential tool for assessing long-term simulations from chemistry-climate/chemistry-transport models. The data are mostly gathered in the upper troposphere – lower stratosphere, a key region regarding the impact of greenhouse gases like water vapour and ozone onthe surface temperature, and also regarding the exchanges between the troposphere and the stratosphere. However, the IAGOS data set has still never been used in its whole ensemble to assessmodel simulations, notably because they are not gridded and their spatio-temporal resolution is far different from the simulations outputs. In the case of the reference simulation with specified dynamics (REF-C1SD) from the Chemistry-Climate Model Initiative (CCMI) experiment, these outputs are characterized by a monthly resolution and a ~ 1 km vertical resolution at cruise altitudes.

The current data set consists in IAGOS data distributed on the MOCAGE (MOdélisation du Climat À Grande Échelle) CTM grid configurated for the REF-C1SD simulation, averaged through each month and each sampled grid cell, for the following observed quantities: ozone, carbon monoxide, temperature, and for the following quantities derived from observations: O3/CO ratio and potential temperature. It is therefore named IAGOS-DM_MOCAGE, with the first suffix DM standing for «distributed on the model grid». It is the first output from the Interpol_IAGOS software presented in Cohen et al. (2020, to be submitted). Its goal is to enable an easy and direct comparison between the gridded data sets IAGOS-DM_MOCAGE and its corresponding simulation output, the MOCAGE REF-C1SD. For each year and each layer, a repertory gathers the IAGOS-DM_MOCAGE files (simply called «IAGOS_yyyymm.nc») and the MOCAGE-M files (called «REFC1SD_yyyymm.nc»), i.e. the REFC1SD-MOCAGE files after applying a mask with respect to the IAGOS sampling. The suffix M stands for «masked».

The final outputs from the Interpol_IAGOS software consist in time series and mean seasonal (and yearly) climatologies. In the corresponding files, the time series have two temporal dimensions: one corresponds to the time series properly (from the 1st until the Nth month) and the other one refers to the seasons (including the whole year as a «fifth season») in order to facilitate the seasonal treatment.