cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/way-xt9-5dy
title: Boloria Moore, 1900

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m41-lpv-2b1
title: Apamea (Apamea) sublustris (Esper)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.29491701.v1
title: The pitfalls of ectomycorrhizal microcosms: lessons learnt for future success

description: Mycorrhizal fungi are known to support their host plants by facilitating nutrient acquisition and enhancing resistance to biotic and abiotic stress. However, the possibility that they also convey structural information about the soil has not yet been tested. Here, we attempted to investigate whether ectomycorrhizal hyphae could guide root growth in response to physical obstacles by using Scots pine (<i>Pinus sylvestris</i>) and <i>Suillus granulatus</i> in a microcosm experiment fitted with U-shaped silicone mazes. Despite initial success in achieving ectomycorrhizal colonisation (88% of the inoculated seedlings), the fungi failed to produce the expected hyphal networks. Extensive and unexpected root growth rendered the system unsuitable for testing our hypothesis. Furthermore, structural issues with the microcosms compromised substrate integrity, possibly inhibiting fungal development. While our results were inconclusive, this report highlights challenges associated with replicating classical ectomycorrhizal experiments, underscoring the need for methodological refinement. We provide detailed recommendations and methodological clarifications that may aid future research. Although our initial hypothesis could not be tested, we argue that traditional microcosm experiments retain potential for advancing our understanding of mycorrhizal ecology, provided they are critically revisited and technically improved. Negative results, when well contextualised, are valuable contributions toward more robust and reproducible experimental frameworks.
DOI: 10.3535/753-qqa-n95
title: Protolampra sobrina Duponchel, 1843

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t2s-gpq-nmf
title: Leptidea sinapis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.28106108
title: Hormonomics profiles revealed the mechanisms of cold stratification in breaking the dormancy during seed germination and emergence process of Polygonatum sibiricum Red

description: <i>Polygonatum sibiricum</i> Red, known as Huangjing in Chinese, is a perennial plant valued in traditional Chinese medicine and is a nutritional food ingredient. With increasing market demand outpacing wild resource availability, cultivation has become essential for sustainable production. However, the cultivation of <i>P. sibiricum</i> is challenged by the double dormancy characteristics of seeds, which include embryo and physiological dormancy. This affected the germination of seeds and the establishment of seedlings. This study investigates the role of plant hormones in breaking seed dormancy and regulating germination and emergence in <i>P. sibiricum</i>. We found that cold stratification at 4°C for over 70 d significantly alleviates seed dormancy, associated with changes in endogenous hormone levels. Auxin, gibberellin, abscisic acid, cytokinin, salicylic acid, jasmonic acid, and ethylene were identified as key players in these processes. Exogenous applications of GA3 and 2-coumarate (2-hydroxycinnamic acid) significantly enhanced seed germination, while 6-BA and GA3 promoted corm growth and development. In conclusion, our research provides insights into the hormonal regulation of seed dormancy and germination in <i>P. sibiricum</i>, offering valuable strategies for improving cultivation practices. Further studies are needed to explore the specific mechanisms of hormone interactions and to develop optimized germination and seedling establishment strategies for this medicinally important plant.
DOI: 10.3535/xrb-372-jtk
title: Erebia lappona Thunberg, 1791

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5878/gtq1-m341
title: Data for: Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption
title: Data for: Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption

description: This dataset is based on a choice experiment survey conducted with 1721 respondents aged 18 and above residing in Sweden in February 2024. The study “Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption” was conducted to determine Swedish consumers’ preferences for a T-shirt with different levels of health risks for the consumer, environmental impacts, and working conditions during production. We estimate the marginal willingness to pay (MWTP) for these attributes and explore consumers' ethical trade-offs between them. We conduct the same analysis for consumers buying a t-shirt for themselves and parents purchasing a t-shirt for their children. 

The dataset is included as an excel file. Coding was done in Nlogit and these codes as well as the questionnaire are included in separate files.
description: This dataset is based on a choice experiment survey conducted with 1721 respondents aged 18 and above residing in Sweden in February 2024. The study “Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption” was conducted to determine Swedish consumers’ preferences for a T-shirt with different levels of health risks for the consumer, environmental impacts, and working conditions during production. We estimate the marginal willingness to pay (MWTP) for these attributes and explore consumers' ethical trade-offs between them. We conduct the same analysis for consumers buying a t-shirt for themselves and parents purchasing a t-shirt for their children. 

The dataset is included as an excel file. Coding was done in Nlogit and these codes as well as the questionnaire are included in separate files.
DOI: 10.6084/m9.figshare.28106108.v1
title: Hormonomics profiles revealed the mechanisms of cold stratification in breaking the dormancy during seed germination and emergence process of Polygonatum sibiricum Red

description: <i>Polygonatum sibiricum</i> Red, known as Huangjing in Chinese, is a perennial plant valued in traditional Chinese medicine and is a nutritional food ingredient. With increasing market demand outpacing wild resource availability, cultivation has become essential for sustainable production. However, the cultivation of <i>P. sibiricum</i> is challenged by the double dormancy characteristics of seeds, which include embryo and physiological dormancy. This affected the germination of seeds and the establishment of seedlings. This study investigates the role of plant hormones in breaking seed dormancy and regulating germination and emergence in <i>P. sibiricum</i>. We found that cold stratification at 4°C for over 70 d significantly alleviates seed dormancy, associated with changes in endogenous hormone levels. Auxin, gibberellin, abscisic acid, cytokinin, salicylic acid, jasmonic acid, and ethylene were identified as key players in these processes. Exogenous applications of GA3 and 2-coumarate (2-hydroxycinnamic acid) significantly enhanced seed germination, while 6-BA and GA3 promoted corm growth and development. In conclusion, our research provides insights into the hormonal regulation of seed dormancy and germination in <i>P. sibiricum</i>, offering valuable strategies for improving cultivation practices. Further studies are needed to explore the specific mechanisms of hormone interactions and to develop optimized germination and seedling establishment strategies for this medicinally important plant.
DOI: 10.6084/m9.figshare.28434952
title: Post-harvest evaluation of the effect of foliar and edaphic applications of silicon in pre-harvest of rose cv. ‘Brighton’

description: The longevity of the rose stem is often affected by the rate of respiration and the evolution in ethylene production, which also favors the development of <i>Botrytis</i>. Silicon is involved in plant defense, and its application could be a strategy to improve disease control. This research evaluated the effect of foliar and edaphic applications of silicon on the life of the Brighton rose using three sources of liquid silicon applied every 2 weeks in three foliar and edaphic conditions and one control. After harvest, the fresh mass loss, ethylene concentration, O<sub>2</sub> consumption and CO<sub>2</sub> evolution were measured. The number of fallen petals was counted, and the severity of the Botrytis infection was evaluated. The biomass loss of the floral stem was analyzed with profile analysis. For the evaluation of the change in values of O<sub>2</sub>, CO<sub>2</sub> and ethylene, a multivariate semiparametric analysis of variance analysis was used and the generalized estimating equation methodology for the longitudinal binary response of severity. It was found that the soil treatment with lower potassium and soluble silicon was associated with a decrease in ethylene concentration as well as also turned out to be the one that best controlled <i>Botrytis</i> in post-harvest.
DOI: 10.3535/3n5-84v-g6d
title: Papilio machaon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/awq-bxw-39h
title: Anarta (Calocestra) melanopa Thunberg, 1791

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5878/tw8z-6c77
title: Data for: Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption
title: Data for: Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption

description: This dataset is based on a choice experiment survey conducted with 1721 respondents aged 18 and above residing in Sweden in February 2024. The study “Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption” was conducted to determine Swedish consumers’ preferences for a T-shirt with different levels of health risks for the consumer, environmental impacts, and working conditions during production. We estimate the marginal willingness to pay (MWTP) for these attributes and explore consumers' ethical trade-offs between them. We conduct the same analysis for consumers buying a t-shirt for themselves and parents purchasing a t-shirt for their children. 

The dataset is included as an excel file. Coding was done in Nlogit and these codes as well as the questionnaire are included in separate files.
description: This dataset is based on a choice experiment survey conducted with 1721 respondents aged 18 and above residing in Sweden in February 2024. The study “Ethical Trade-Offs in Fast Fashion: Exploring Social, Environmental, and Health Dimensions in Clothing Consumption” was conducted to determine Swedish consumers’ preferences for a T-shirt with different levels of health risks for the consumer, environmental impacts, and working conditions during production. We estimate the marginal willingness to pay (MWTP) for these attributes and explore consumers' ethical trade-offs between them. We conduct the same analysis for consumers buying a t-shirt for themselves and parents purchasing a t-shirt for their children. 

The dataset is included as an excel file. Coding was done in Nlogit and these codes as well as the questionnaire are included in separate files.
DOI: 10.6084/m9.figshare.28434952.v1
title: Post-harvest evaluation of the effect of foliar and edaphic applications of silicon in pre-harvest of rose cv. ‘Brighton’

description: The longevity of the rose stem is often affected by the rate of respiration and the evolution in ethylene production, which also favors the development of <i>Botrytis</i>. Silicon is involved in plant defense, and its application could be a strategy to improve disease control. This research evaluated the effect of foliar and edaphic applications of silicon on the life of the Brighton rose using three sources of liquid silicon applied every 2 weeks in three foliar and edaphic conditions and one control. After harvest, the fresh mass loss, ethylene concentration, O<sub>2</sub> consumption and CO<sub>2</sub> evolution were measured. The number of fallen petals was counted, and the severity of the Botrytis infection was evaluated. The biomass loss of the floral stem was analyzed with profile analysis. For the evaluation of the change in values of O<sub>2</sub>, CO<sub>2</sub> and ethylene, a multivariate semiparametric analysis of variance analysis was used and the generalized estimating equation methodology for the longitudinal binary response of severity. It was found that the soil treatment with lower potassium and soluble silicon was associated with a decrease in ethylene concentration as well as also turned out to be the one that best controlled <i>Botrytis</i> in post-harvest.
DOI: 10.6084/m9.figshare.29097340
title: Sizing up competition with strigolactones: the case of pea plants

description: Plants, though sessile, can detect and respond to their neighbors through chemical signals such as strigolactones (SLs). We investigated how SL synthesis and perception affect the climbing behavior of <i>Pisum sativum</i> by analyzing wild-type plants and two SL-related mutants—<i>rms1–1</i> (SL-deficient) and <i>rms3–1</i> (SL-insensitive) – grown either alone or paired with a plant of a different genotype but of the same genetic background. Using 3D kinematic analysis, we quantified the circumnutation and attachment dynamics. Our results show that social context significantly modulated climbing behavior. <i>rms1–1</i> mutants, although unable to grasp the support, showed increased movement velocity in social conditions, suggesting enhanced exploratory behavior. In contrast, <i>rms3–1</i> mutants exhibited slower, disoriented movements when paired, indicating impaired neighbor perception. Wild-type plants successfully grasped the support in all conditions but altered their behavior socially, increasing movement velocity with a more careful approaching phase. These results show that SL-mediated signaling, through both emission and perception, shapes context-dependent climbing strategies in pea plants.
DOI: 10.3535/1v2-sw2-trl
title: Drepana falcataria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9tc-ray-z2g
title: Fabriciana adippe ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.28631861
title: Functional characterization of four soybean C2H2 zinc-finger genes in <i>Phytophthora</i> resistance

description: Soybean (<i>Glycine max</i>) is one of the most important industrial and oilseed crops; however, the yield is threatened by the invasion of various pathogens. Soybean stem and root rot, caused by <i>Phytophthora sojae</i>, is a destructive disease that significantly damages soybean production worldwide. C2H2 zinc finger protein (C2H2-ZFP) is a large transcription factor family in plants that plays crucial roles in stress response and hormone signal transduction. Given its importance, we analyzed the expression patterns of C2H2-ZFP family genes in response to <i>P. sojae</i> infection and selected four candidate genes to explore their molecular characteristics and functions related to <i>P. sojae</i> resistance. Subcellular localization analysis indicated that three ZFPs (GmZFP2, GmZFP3, and GmZFP4) were localized in the nucleus, while GmZFP1 was found in both the nucleus and plasma membrane. Dual-luciferase transient expression analysis revealed that all four ZFPs possessed transcriptional repression activation. Further transient expression in <i>N. benthamiana</i> leaves demonstrated that <i>GmZFP2</i> induced significant cell death and reactive oxygen species (ROS) accumulation. <i>GmZFP2</i> significantly enhanced the resistance to <i>Phytophthora</i> pathogens in <i>N. benthamiana</i> leaves and soybean hairy roots. This study provides insights in to the functional characterization of soybean ZFPs in <i>Phytophthora</i> resistance and demonstrates that <i>GmZFP2</i> plays a positive role in <i>P. sojae</i> resistance in soybeans.
DOI: 10.6084/m9.figshare.29097340.v2
title: Sizing up competition with strigolactones: the case of pea plants

description: Plants, though sessile, can detect and respond to their neighbors through chemical signals such as strigolactones (SLs). We investigated how SL synthesis and perception affect the climbing behavior of <i>Pisum sativum</i> by analyzing wild-type plants and two SL-related mutants—<i>rms1–1</i> (SL-deficient) and <i>rms3–1</i> (SL-insensitive) – grown either alone or paired with a plant of a different genotype but of the same genetic background. Using 3D kinematic analysis, we quantified the circumnutation and attachment dynamics. Our results show that social context significantly modulated climbing behavior. <i>rms1–1</i> mutants, although unable to grasp the support, showed increased movement velocity in social conditions, suggesting enhanced exploratory behavior. In contrast, <i>rms3–1</i> mutants exhibited slower, disoriented movements when paired, indicating impaired neighbor perception. Wild-type plants successfully grasped the support in all conditions but altered their behavior socially, increasing movement velocity with a more careful approaching phase. These results show that SL-mediated signaling, through both emission and perception, shapes context-dependent climbing strategies in pea plants.
DOI: 10.3535/kam-175-f44
title: Agriphila selasella Hübner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.30113693
title: Scion organ removal alters hormone levels and gene expression associated with adventitious root development in grafted watermelon seedlings

description: Adventitious roots (ARs) are crucial for grafted watermelon seedlings, playing vital roles in nutrient absorption, stress resistance, and grafting efficacy. However, the way in which scions regulate endogenous hormones to influence AR formation remains poorly understood. In this study, we constructed watermelon seedlings (WP) using “HXX” as the scion and “Tie Zhen No. 3” as the rootstock. Scion cotyledons removal (WP-1) significantly promoted AR development. In contrast, true leaf removal (WP-2) had minimal effect, while simultaneous removal of both (WP-3) elicited intermediate responses. Endogenous hormone dynamics showed that WP-1 maintained progressively increasing indole-3-acetic acid (IAA) with lower abscisic acid (ABA) and jasmonic acid (JA) levels, whereas both WP-2 and WP-3 exhibited divergent hormonal profiles in ARs during later development stages. Transcriptome sequencing revealed that differentially expressed genes (DEGs) are enriched in various hormone signaling pathways. On the fourth day, when the number of differential genes was the highest, the DEGs significantly expressed in all three treatment groups were enriched in the activation signaling pathways and responses of JA, auxin, ethylene, and cytokinins. Transcription factors such as bHLH, ERF, MYB, and NAC were significantly expressed during the development of ARs, playing a key regulatory role. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis identified 82 DEGs across five hormone signal transduction pathways. The weighted gene co-expression network analysis (WGCNA) identified modules positively correlated with AR hormones, highlighting hub genes such as ethylene transcription factors (CRF4, ABR1, ERF054, ERF098), auxin response factors (SAUR21 and SAUR32), and other regulators (CSA, HSP, bHLH93, ZAT5, ZAT13, NAC, MYB, and C3H). These findings provide preliminary evidence of the scion's regulatory role in AR development through hormones, offering a foundation for improving watermelon grafting practices.
DOI: 10.6084/m9.figshare.30113693.v1
title: Scion organ removal alters hormone levels and gene expression associated with adventitious root development in grafted watermelon seedlings

description: Adventitious roots (ARs) are crucial for grafted watermelon seedlings, playing vital roles in nutrient absorption, stress resistance, and grafting efficacy. However, the way in which scions regulate endogenous hormones to influence AR formation remains poorly understood. In this study, we constructed watermelon seedlings (WP) using “HXX” as the scion and “Tie Zhen No. 3” as the rootstock. Scion cotyledons removal (WP-1) significantly promoted AR development. In contrast, true leaf removal (WP-2) had minimal effect, while simultaneous removal of both (WP-3) elicited intermediate responses. Endogenous hormone dynamics showed that WP-1 maintained progressively increasing indole-3-acetic acid (IAA) with lower abscisic acid (ABA) and jasmonic acid (JA) levels, whereas both WP-2 and WP-3 exhibited divergent hormonal profiles in ARs during later development stages. Transcriptome sequencing revealed that differentially expressed genes (DEGs) are enriched in various hormone signaling pathways. On the fourth day, when the number of differential genes was the highest, the DEGs significantly expressed in all three treatment groups were enriched in the activation signaling pathways and responses of JA, auxin, ethylene, and cytokinins. Transcription factors such as bHLH, ERF, MYB, and NAC were significantly expressed during the development of ARs, playing a key regulatory role. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis identified 82 DEGs across five hormone signal transduction pathways. The weighted gene co-expression network analysis (WGCNA) identified modules positively correlated with AR hormones, highlighting hub genes such as ethylene transcription factors (CRF4, ABR1, ERF054, ERF098), auxin response factors (SAUR21 and SAUR32), and other regulators (CSA, HSP, bHLH93, ZAT5, ZAT13, NAC, MYB, and C3H). These findings provide preliminary evidence of the scion's regulatory role in AR development through hormones, offering a foundation for improving watermelon grafting practices.
DOI: 10.6084/m9.figshare.30149139
title: Levels of extracellular ATP in growth zones of Arabidopsis primary roots are changed by altered expression of apyrase enzymes

description: In both animal and plant cells extracellular nucleotides act as hormone-like signals regulating many important physiological and developmental responses. In plants, many of these responses have been studied in roots. Here we used an enzyme-based microsensor to measure the concentrations of extracellular ATP (eATP) within 2 µm of epidermal cell surfaces in growth zones of primary roots of wild-type and transgenic Arabidopsis seedlings. The concentration of eATP outside of growing wild-type roots was in the nanomolar range and was highest in in the elongation zone. The concentrations of eATP in wild-type roots were altered in two kinds of mutants, those that were overexpressing <i>AtAPY1</i> or <i>AtAPY2</i>, which encode apyrases (NTPDases) that regulate root and root hair growth, and those that were suppressed in the expression of these two transcripts. Our results indicate that the [eATP] measured varies inversely with the level of expression of these apyrases. Structural modeling of these two apyrases predicts active site configurations capable of binding ATP. Taken together these results favor the hypothesis that AtAPY1 and AtAPY2 regulate eATP levels in primary roots.
DOI: 10.3535/01d-jha-tbv
title: Agriphila selasella Hübner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rtx-me3-bx2
title: Phengaris Doherty, 1891

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.