cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11898228
title: Supplementary Material for: Nutritional Index as Prognostic Indicator in Patients Receiving Lenvatinib Treatment for Unresectable Hepatocellular Carcinoma

description: <b><i>Background/Aim:</i></b> Few studies have examined the details of nutritional status in patients with unresectable hepatocellular carcinoma (u-HCC) undergoing systemic chemotherapy with lenvatinib. We evaluated the prognostic/predictive value of nutritional status using Onodera’s prognostic nutritional index (O-PNI) for overall survival among patients with u-HCC treated with lenvatinib. <b><i>Methods:</i></b> Three-hundred and seventy-five u-HCC patients treated with lenvatinib were enrolled (median age 72 years; Child-Pugh class A/B/C: <i>n</i> = 312/60/3; BCLC stage A/B/C/D: <i>n</i> = 2/159/212/2). We examined median survival time (MST) and time to progression (TTP) in all patients (<i>n</i> = 375), prognosis according to the O-PNI (high/low: &gt;40/≤40) in 298 patients with lymphocyte findings, and the prognostic/predictive values of Child-Pugh stage, albumin-bilirubin (ALBI)/modified ALBI (mALBI) grade, and O-PNI for Chemotherapy grade (OPNIC grade 1/2/3: O-PNI &gt;40/≤40 to &gt;36/≤36). <b><i>Results:</i></b> The MST and TTP were 16.6 and 8.0 months, respectively. The MST and TTP according to the O-PNI (&gt;40/≤40) were “not reached” (NR)/12.4 months (<i>p</i> &lt; 0.001) and 10.0/6.1 months (<i>p</i> = 0.012), respectively. There was a good correlation noted between ALBI score and O-PNI (<i>r</i> = −0.939, <i>p</i> &lt; 0.001). The predictive value of the O-PNI for mALBI grade 2a was 36.0 (specificity/sensitivity = 0.894/0.942; area under the curve [AUC] = 0.978), while that for mALBI grade 1 was 39 (specificity/sensitivity = 0.920/0.929; AUC = 0.972), which was very similar to a high O-PNI. The MST analyzed with the OPNIC in the 298 patients was NR/16.2/10.4 months for OPNIC grade 1/2/3 (<i>p</i> &lt; 0.001), respectively, and the c-index was 0.632, the same as that for mALBI grade (0.632), while that for Child-Pugh class was 0.571. <b><i>Conclusions:</i></b> OPNIC grading might have a potential for easy substitution of mALBI grading. A good nutritional status (OPNIC grade 1) or mALBI grade 1 is the best indication for lenvatinib use, while with an OPNIC grade 3, lenvatinib might be not suitable.
DOI: 10.6084/m9.figshare.11898228.v1
title: Supplementary Material for: Nutritional Index as Prognostic Indicator in Patients Receiving Lenvatinib Treatment for Unresectable Hepatocellular Carcinoma

description: <b><i>Background/Aim:</i></b> Few studies have examined the details of nutritional status in patients with unresectable hepatocellular carcinoma (u-HCC) undergoing systemic chemotherapy with lenvatinib. We evaluated the prognostic/predictive value of nutritional status using Onodera’s prognostic nutritional index (O-PNI) for overall survival among patients with u-HCC treated with lenvatinib. <b><i>Methods:</i></b> Three-hundred and seventy-five u-HCC patients treated with lenvatinib were enrolled (median age 72 years; Child-Pugh class A/B/C: <i>n</i> = 312/60/3; BCLC stage A/B/C/D: <i>n</i> = 2/159/212/2). We examined median survival time (MST) and time to progression (TTP) in all patients (<i>n</i> = 375), prognosis according to the O-PNI (high/low: &gt;40/≤40) in 298 patients with lymphocyte findings, and the prognostic/predictive values of Child-Pugh stage, albumin-bilirubin (ALBI)/modified ALBI (mALBI) grade, and O-PNI for Chemotherapy grade (OPNIC grade 1/2/3: O-PNI &gt;40/≤40 to &gt;36/≤36). <b><i>Results:</i></b> The MST and TTP were 16.6 and 8.0 months, respectively. The MST and TTP according to the O-PNI (&gt;40/≤40) were “not reached” (NR)/12.4 months (<i>p</i> &lt; 0.001) and 10.0/6.1 months (<i>p</i> = 0.012), respectively. There was a good correlation noted between ALBI score and O-PNI (<i>r</i> = −0.939, <i>p</i> &lt; 0.001). The predictive value of the O-PNI for mALBI grade 2a was 36.0 (specificity/sensitivity = 0.894/0.942; area under the curve [AUC] = 0.978), while that for mALBI grade 1 was 39 (specificity/sensitivity = 0.920/0.929; AUC = 0.972), which was very similar to a high O-PNI. The MST analyzed with the OPNIC in the 298 patients was NR/16.2/10.4 months for OPNIC grade 1/2/3 (<i>p</i> &lt; 0.001), respectively, and the c-index was 0.632, the same as that for mALBI grade (0.632), while that for Child-Pugh class was 0.571. <b><i>Conclusions:</i></b> OPNIC grading might have a potential for easy substitution of mALBI grading. A good nutritional status (OPNIC grade 1) or mALBI grade 1 is the best indication for lenvatinib use, while with an OPNIC grade 3, lenvatinib might be not suitable.
DOI: 10.6084/m9.figshare.11898213
title: Metadata record for: A survey of invasive plants on grassland soil microbial communities and ecosystem services

description: This dataset contains key characteristics about the data described in the Data Descriptor A survey of invasive plants on grassland soil microbial communities and ecosystem services. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11898180
title: Data: Variable environments select for short lifespan

description: Lifespan data for the manuscripthttps://doi.org/10.1101/2020.01.29.924373 <br><br>The included data have five selection regimes, each replicated by six populations (Line). Lifespan data collected in two temperatures (20C, 25C), for each temperature there are two climate cabinets. Ten female Caenorhabditis remanei (together with the same number of males from the starting population) per plate, 4 plates per temperature and line combination (2 in each cabinet).<br>
DOI: 10.6084/m9.figshare.11898213.v2
title: Metadata record for: A survey of invasive plants on grassland soil microbial communities and ecosystem services

description: This dataset contains key characteristics about the data described in the Data Descriptor A survey of invasive plants on grassland soil microbial communities and ecosystem services. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11898180.v1
title: Data: Variable environments select for short lifespan

description: Lifespan data for the manuscripthttps://doi.org/10.1101/2020.01.29.924373 <br><br>The included data have five selection regimes, each replicated by six populations (Line). Lifespan data collected in two temperatures (20C, 25C), for each temperature there are two climate cabinets. Ten female Caenorhabditis remanei (together with the same number of males from the starting population) per plate, 4 plates per temperature and line combination (2 in each cabinet).<br>
DOI: 10.6084/m9.figshare.11898213.v1
title: Metadata record for: A survey of invasive plants on grassland soil microbial communities and ecosystem services

description: This dataset contains key characteristics about the data described in the Data Descriptor A survey of invasive plants on grassland soil microbial communities and ecosystem services. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11898174
title: Metadata record for: A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan

description: This dataset contains key characteristics about the data described in the Data Descriptor A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11898174.v1
title: Metadata record for: A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan

description: This dataset contains key characteristics about the data described in the Data Descriptor A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11898174.v2
title: Metadata record for: A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan

description: This dataset contains key characteristics about the data described in the Data Descriptor A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11898141
title: Moringa oleifera transcriptome

description: De novo assembly of Moringa oleifera leaf transcriptome
DOI: 10.25345/c5c17x
title: MassIVE Reanalysis RMSV000000333.1 - HUPO HPP Phosphopeptide Challenge, Four Dataset PTMProphet Reanalysis
title: The PSM identification results of the neat mixtures of four reports were analyzed using PTMProphet to assign probabilities to each potential phosphorylation site, compute information contents of site localizations, and test different thresholds for information content.
DOI: 10.6084/m9.figshare.11898066
title: Analogues on the Sphere of the Affine-Equivariant Spatial Median

description: <b>Robust estimation of location for data on the unit sphere</b>Sp−1<b>is an important problem in directional statistics even though the influence functions of the sample mean direction and other location estimators are bounded. A significant limitation of previous literature on this topic is that robust estimators and procedures have been developed under the assumption that the underlying population is rotationally symmetric. This assumption often does not hold with real data and in these cases there is a needless loss of efficiency in the estimator. In this article, we propose two estimators for spherical data, both of which are analogous to the affine-equivariant spatial median in Euclidean space. The influence functions of the new location estimators are obtained under a new semiparametric elliptical symmetry model on the sphere and are shown to be standardized bias robust in the highly concentrated case; the influence function of the companion scatter matrix is also obtained. An iterative algorithm that computes both estimators is described. Asymptotic results, including consistency and asymptotic normality, are also derived for the location estimators that result from applying a fixed number of steps in this algorithm. Numerical studies demonstrate that both location estimators may be expected to perform well in practice in terms of efficiency and robustness. A brief example application from the geophysics literature is also provided. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.11898066.v2
title: Analogues on the Sphere of the Affine-Equivariant Spatial Median

description: <b>Robust estimation of location for data on the unit sphere</b>Sp−1<b>is an important problem in directional statistics even though the influence functions of the sample mean direction and other location estimators are bounded. A significant limitation of previous literature on this topic is that robust estimators and procedures have been developed under the assumption that the underlying population is rotationally symmetric. This assumption often does not hold with real data and in these cases there is a needless loss of efficiency in the estimator. In this article, we propose two estimators for spherical data, both of which are analogous to the affine-equivariant spatial median in Euclidean space. The influence functions of the new location estimators are obtained under a new semiparametric elliptical symmetry model on the sphere and are shown to be standardized bias robust in the highly concentrated case; the influence function of the companion scatter matrix is also obtained. An iterative algorithm that computes both estimators is described. Asymptotic results, including consistency and asymptotic normality, are also derived for the location estimators that result from applying a fixed number of steps in this algorithm. Numerical studies demonstrate that both location estimators may be expected to perform well in practice in terms of efficiency and robustness. A brief example application from the geophysics literature is also provided. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.11898033
title: Effects of dietary Amazonian lyophilized fruit Euterpe oleracea Mart. on fish Colossoma macropomum submitted to transport stress

description: In this study, a 30-day feeding experiment was carried to evaluate the effects of the intake of lyophilized <i>E. oleracea</i> (LEO) by tambaqui fish <i>Colossoma macropomum</i> juveniles after shipping stress. Six experimental diets were considered containing 0.00, 0.63, 1.25, 2.50, 5.00, and 10.0% (w/w) of LEO inclusion. In plastic bags, a simulated transport was performed for up to 3, 6, 12 and 24 h. Dietary LEO prepare the tambaqui for long transport, particularly improving the available of oxygen in the water. The dietary açai did not changes the glucose levels after transport. However, 1.25% and 10.0% LEO promoted a better hepatic antioxidant capacity, being higher 42% e 53% that to control when transported for up to 12 h. Nevertheless, the transport time was masterful to the impairment of antioxidant competence in the other organs studied (gills, brain, and muscle). In contrast, LEO counterbalanced the lipid peroxidation on brain, gills, liver and muscle of the tambaqui in up to 12 h, although still effective in the gills within 24 h. Thus, advantages are notable for LEO intake by tambaqui prior to transport. The inclusion of 2.50% to 5.00% LEO should be considered for provided higher resistance against lipid damage in all organs evaluated, besides improve the water quality conditions for tambaqui juveniles transported in short to medium duration.
DOI: 10.6084/m9.figshare.11898033.v1
title: Effects of dietary Amazonian lyophilized fruit Euterpe oleracea Mart. on fish Colossoma macropomum submitted to transport stress

description: In this study, a 30-day feeding experiment was carried to evaluate the effects of the intake of lyophilized <i>E. oleracea</i> (LEO) by tambaqui fish <i>Colossoma macropomum</i> juveniles after shipping stress. Six experimental diets were considered containing 0.00, 0.63, 1.25, 2.50, 5.00, and 10.0% (w/w) of LEO inclusion. In plastic bags, a simulated transport was performed for up to 3, 6, 12 and 24 h. Dietary LEO prepare the tambaqui for long transport, particularly improving the available of oxygen in the water. The dietary açai did not changes the glucose levels after transport. However, 1.25% and 10.0% LEO promoted a better hepatic antioxidant capacity, being higher 42% e 53% that to control when transported for up to 12 h. Nevertheless, the transport time was masterful to the impairment of antioxidant competence in the other organs studied (gills, brain, and muscle). In contrast, LEO counterbalanced the lipid peroxidation on brain, gills, liver and muscle of the tambaqui in up to 12 h, although still effective in the gills within 24 h. Thus, advantages are notable for LEO intake by tambaqui prior to transport. The inclusion of 2.50% to 5.00% LEO should be considered for provided higher resistance against lipid damage in all organs evaluated, besides improve the water quality conditions for tambaqui juveniles transported in short to medium duration.
DOI: 10.6084/m9.figshare.11898027
title: Supplementary Table S1 from Role of the intestinal microbiome in low-density polyethylene degradation by caterpillar larvae of the greater wax moth, <i>Galleria mellonella</i>

description: Pairwise comparisons of relative bacterial genera abundance of Galleria mellonella starved (S), honeycomb-fed (HF), and platic-fed (PF) treatments at 24 h and 72 h.
DOI: 10.6084/m9.figshare.11897991
title: Data dictionary.xlsx

description: These data were collected from 4 laboratory visits and from one screening survey prior to participation. Participant consent to provide personal information was obtained prior to the screening survey and informed consent was obtained before participation in study procedures. All study procedures were approved by the Institutional Review Board at the University at Buffalo. This study tested delay discounting, relative reinforcement of snack food and <i>ad libitum</i> energy intake following one engagement of episodic future thinking (EFT), or the control episodic recent thinking (ERT). Visits 1 and 2 occurred prior to one week of daily engagement in EFT or ERT, and visits 3 and 4 occurred following 1 week of daily engagement in EFT or ERT. Anthropometric data and participant characteristics were collected on visit 1 along with a delay discounting task (Rollins, Dearing, Epstein, 2010), and snack food buffet to test <i>ad libitum</i> energy intake. The delay discounting task and snack food buffet were repeated on visit 4. Relative reinforcement value (RRV) of high energy dense (HED) compared to low energy dense (LED) snack food was measured on visit 2 and again on visit 3. The dependent variables, described in more detail in the full manuscript, analyzed from these tasks are listed below:Delay discounting task: area under the curve (AUC) calculated by plotting indifference points at 7 delays. Greater AUC= less discounting<i>Ad libitum</i> buffet: total energy intake, energy from HED food and energy from LED food (all in terms of kilocalories)RRV: breakpoint, or the highest schedule of reinforcement completed for HED and LED food.During the study, participants also completed a self report measure of impulsivity, the Barratt Impulsiveness Scale (BIS) (Patton, 1995). This scale was administered upon screening, during visit 1 and again on visit 4. They also completed a digital adjusting delay task (Koffarnus and Bickel, 2014) every day after engaging in EFT or ERT, and the natural log of k, the discount rate, was analyzed as the primary dependent measure from this task. <br><br>
DOI: 10.6084/m9.figshare.11897994
title: Accuracy and user performance evaluation of a blood glucose monitoring system which wirelessly transmits results to compatible insulin pumps

description: <b>Objective:</b> To perform evaluations of the CONTOUR PLUS LINK 2.4 blood glucose monitoring system (BGMS) assessed according to ISO 15197:2013 criteria. <b>Methods:</b> Clinical trial registered at ClinicalTrials.gov (NCT01824355). In a laboratory study (Study 1), capillary fingertip blood samples from 100 subjects were evaluated in duplicate, using three test strip lots. In a clinical trial (Study 2), 113 adults with diabetes were enrolled, and BGMS results and Yellow Springs Instruments (YSI) analyzer reference measurements were compared for subject- and trial staff-obtained fingertip blood and subject-obtained palm blood. Subjects completed a questionnaire to evaluate BGMS ease of use. <b>Results:</b> In Study 1, 100% of combined results (all test strip lots) fulfilled ISO 15197:2013 section 6.3 criteria. In Study 2, 97.7% of subject-obtained fingertip results and 100% of trial staff-obtained fingertip results met ISO 15197:2013 section 8 criteria. Additionally, 93.8% of palm results were within ± 15 mg/dL of mean YSI measurements for glucose concentrations &lt;100 mg/dL or ± 15% for glucose concentrations ≥100 mg/dL. Most subjects found the BGMS easy to use. There were three non-serious, non-device related adverse events. <b>Conclusion:</b> The BGMS exceeded minimum ISO 15197:2013-specified accuracy criteria in the laboratory and in the hands of lay users with diabetes.
DOI: 10.6084/m9.figshare.11897928
title: Effects of dietary Amazonian açai (Euterpe oleracea Martius) fruit on growth performance, skin coloration and antioxidant status of Colossoma macropomum

description: A 30-day feeding trial was carried to evaluate the effects of dietary lyophilized <i>Euterpe oleracea</i> (LEO) on growth performance, skin coloration, antioxidant status, and feed cost of tambaqui <i>Colossoma macropomum</i>. Six isoenergetic and isoproteic diets were formulated with 0.00, 0.63, 1.25, 2.50, 5.00, and 10.0% (w/w) of LEO, respectively. Growth performance and biochemical parameters in the intestine, liver, and muscle were assessed. The results showed that the zootechnical indexes were optimized in groups fed with diets 1.25% to 10.0% LEO (p &lt; 0.05). Muscle showed no increase in flavonoid and polyphenols content, neither <i>in vitro</i> antioxidant capacity (DPPH). Fish fed with 5.00% to 10.0% LEO had an increase in cyan color (p &lt; 0.05). Administration from 0.63% LEO increases by 39.57% the antioxidant capacity total (ACAP) intestinal (p &lt; 0.05). An estimated inclusion of 5.47 % LEO minimize intestinal TBARS levels (p &lt; 0.05). Higher levels of LEO inclusion increase the feed cost of tambaqui, but inclusion up to 1.25% LEO is economically feasible. Therefore, the inclusion of up to 1.25% LEO in the diet is recommended because growth and feed utilization are satisfactory, with higher intestinal antioxidant capacity, and viable feed cost.
DOI: 10.6084/m9.figshare.11897940
title: Energetic metabolism in muscle of tambaqui juveniles (Colossoma macropomum) fed with dietary açai (Euterpe oleracea Mart).

description: Açai, <i>Euterpe oleracea</i>, is an Amazonian fruit constituted for a noble profile of phytochemicals that coming recently studied in feed for aquaculture. The present study evaluated the hypotheses that in tambaqui juveniles, <i>Colossoma macropomum</i>, the lyophilized <i>E. oleracea</i> (LEO) should increase the muscle energetic potential from the optimization of energy fuels and reserves mobilization. These effects were predicted by higher growth performance and optimization feed utilization in a previous study. Fuels energy and reserves, besides electron transport system (ETS) and acetyl-CoA carboxylase (ACC) activity, were measured in the muscle of tambaqui. Fish were fed a control diet (0.00% LEO) or LEO diets with containing 0.63, 1.25, 2.50, 5.00, and 10.0% (w/w) of inclusion per 30-day. Fish fed from dietary 0.63% LEO had a significant reduction in triglycerides levels in the muscle when compared with the control group. LEO did not alter the content of cholesterol, glucose, glycogen and total protein in the muscle. However, there was an increment of ETS activity to 76.25% in tambaqui fed with the diet 1.25% LEO compared to the control group, indicating an important improvement in the muscle metabolic potential. These results suggest that açai has positive effects on the energetic metabolism of tambaqui due to its phytochemicals properties that probably derivate energy by food and additionally from lipolysis (triglycerides) promoting a muscular energy state that favor growth.