cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sk89tgywnp
title: Online Blast and Customized Blast for mer operon genes in pseudomonas stutzeri 49 slecetd strains

description: The data set contains balst hit files for the results obtained by online balst of mer genes for the refseq database and customized database of 49 strains created by makeblastdb
DOI: 10.6084/m9.figshare.27323517.v1
title: Medaka Gene Model version 3

description: Modified gene models derived from the GFF file from NCBI with supplementing explicit lines for UTRs and fusing adjacent exons that were separated (without any introns in between, strangely) by peaks2utr.
DOI: 10.17632/gpps8gp6m2
title: Dataset for the research paper 'Machine learning techniques for plant disease detection: an evaluation with a customized dataset'

description: This is a customized dataset used in the research paper "Machine learning techniques for plant disease detection: an evaluation with a customized dataset," which was accepted for publication in the peer-reviewed journal International Journal of Informatics and Communication Technology (IJ-ICT). We constructed this dataset by cleaning and combining multiple open datasets (as cited in our article). There are 87,570 records and 97 classes in the dataset. It includes 32 different plant species and 74 distinct disease forms. The images in the dataset were programmatically chosen at random and divided into train and test sets in a 70:30 ratio. The train and test sets have 61,259 and 26,311 images respectively.

The dataset contains leaf images from both laboratory setups and cultivation fields, making it more representative than most existing datasets, which only include images from lab-controlled settings and frequently contain a small number of records and classes that are unsuitable for real-world applications. To the best of our knowledge, no such datasets have been used for deep learning models. The paper is available at http://doi.org/10.11591/ijict.v12i2.pp127-139.
DOI: 10.26188/5d3e5539dca74
title: Determinants of drug entry into the developing brain: raw data files

description: Raw data for key barrier transporters and permeability measurements
DOI: 10.6084/m9.figshare.1412608.v1
title: PJM and MISO electricity markets price data

description: Hourly price data both day-ahead and real time for PJM and MISO electricity markets, going from 00:00 of 1st January 2014 to 23:00 of 9th March. The data has been collected, cleaned and provided by Invenia Technical Computing Corporation; when a price was not available, it has been replaced with a NaN value. The file contains a dataset in Matlab 2012 .mat file extension and a readme text file. The dataset contains day-ahead price data for the MCC, MEC and LMP time series for both markets. Each time series is in a matrix format - Node x Time - with variable names da_(mcc/mec/lmp)_(miso/pjm).
DOI: 10.6084/m9.figshare.1466918.v1
title: French contact matrices

description: French contact matrices for "all contact" and "physical contact only"
DOI: 10.6084/m9.figshare.21817716.v1
title: iNaturalist Data

description: The large iNaturalist data set used for most of the analyses.
DOI: 10.6084/m9.figshare.25908019.v2
title: Raw and Processed Data in the article Cartography of Hate Expressions on Web Pages and Social Networks of Spanish News Media

description: Raw and Processed Data in the article Cartography of Hate Expressions on Web Pages and Social Networks of Spanish News Media, whose objective is to establish a cartography of the hatred spread based on the comments sent by users to various social networks after the publication of information through different digital media in Spain.The processed data is based on the collection of 10,111,321 messages published in five of the main Spanish digital media (El Mundo, ABC, El País, La Vanguardia, and 20 Minutos) between January 2021 and July 2022 on X, Facebook, and its web portals. Of this total, 929,625 messages containing hate expressions were identified.This work is a result of the Cartodiocom Project (PID2019-105613GB-C31) and Hatemedia Project (PID2020-114584GB-I00), funded by MCIN/AEI /10.13039/501100011033.<br>
DOI: 10.6084/m9.figshare.28787375.v1
title: Genome annotation (repeats and protein-coding genes)

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.6084/m9.figshare.21253971.v1
title: Data from: Systemic racism alters wildlife genetic diversity

description: Data from: Schmidt and Garroway (2022) Systemic racism alters wildlife genetic diversity <br> Paper: https://www.pnas.org/doi/10.1073/pnas.2102860119 <br> Pre-print: https://ecoevorxiv.org/wbq83/ <br> Associated code is available on github: https://github.com/chloewsch/segregation_gendiv
DOI: 10.6084/m9.figshare.25975261.v1
title: Globally Important Agricultural Heritage Systems in Japan: investigating selected agricultural practices and values for farmers

description: The concept of Globally Important Agricultural Heritage Systems (GIAHS) evolved as a global collaborative endeavour to identify and protect a mosaic of traditional agro-ecosystems and landscapes that are rich in biodiversity and have both cultural and livelihood importance for farmers. In this study, we document prominent features of selected agricultural practices and GIAHS values using empirical data from two GIAHS sites in Japan. The designation of GIAHS in traditional farming landscapes encouraged farmers to maintain age-old practices, protect local crop varieties, revitalize discontinued agriculture (e.g. swidden agriculture), and add nature-based technologies such as micro hydroelectric projects. Farmers’ cooperative efforts have been reinforced, community bonding has been strengthened, local festivity has been expanded, and relationships with numerous government and non-government organizations have been formed. Their farm productivity remained modest, but household income increased owing to branding, certification, internet marketing, and farm stays supported by partnerships. The above attributes of GIAHS are closely linked to the principles of sustainable and regenerative agriculture. The primary issues for the viability of GIAHS are aging farmers and the depopulation of younger people. Lessons from this study could be valuable for developing GIAHS in countries where local agricultural practices and farmer livelihoods are under threat.
DOI: 10.6084/m9.figshare.5417557.v1
title: Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (Meta-Analysis)

description: Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in press).<br>Welfare changes are equivalent variation and are based on yield shocks derived from a meta-analysis from the yield impacts database reported in Challinor et al. (2014). Gridded yield shocks used as input for the simulation are available at 10.6084/m9.figshare.5417548<br>Moore, F. C., Baldos, U., Hertel, T. W. & Diaz, D. New Science of Climate Change Impacts on Agriculture Implies Higher Social Cost of Carbon. Nat. Commun.<br><br>Challinor, A. J., Watson, J., Lobell, D. B., Howden, S. M., Smith, D. R. & Chhetri, N. A meta-analysis of crop yield under climate change and adaptation. Nat. Clim. Chang. 4, 287–291 (2014).<br>
DOI: 10.17632/98rhrf6s72
title: Dataset for master thesis

description: Panel contains financial statement data of Russian public non-financial companies and also their annual dividend announcements. Precise description of dataset is presented on special sheet of the file.
DOI: 10.17632/vj8bwtwynb
title: Distância entre os municípios brasileiros

description: Base de dados com a distância geográfica entre os municípios brasileiros, em metros, não é a distância viária. base de dados compactada (zip) em formato CSV (separador vírgula e decimal ponto) Campos nome_municipio1, nome_municipio2 - nomes do município cod_municipio1, cod_municipio2 - código do município segundo o IBGE distanciaGeo - distância geodésica considerando o elipsoide WGS84 distanciaCos - distância esférica utilizando a lei dos cossenos distanciaHsin - distância esférica utilizando o método de haversine distanciaMeeus - distância geodésica utilizando o método Meeus distanciaSvince - distância geodésica utilizando o método Vincenty fonte das coordenadas dos municípios: https://github.com/kelvins/Municipios-Brasileiros
DOI: 10.6084/m9.figshare.14547543.v2
title: Plant Traits

description: Insert description
DOI: 10.17632/fw2fn6z25p
title: Data for: Patterns and drivers of development in a west Amazonian peatland during the late Holocene

description: This study uses multiple peat cores to improve our understanding of the long-term development of a peatland (Quistococha) in Peruvian Amazonia, by providing a reconstruction of the spatial patterns of vegetation change and peat accumulation over time across the site. Peat cores taken along transects totalling c. 5 km were used to establish the peat thickness and visible stratigraphy. Of 29 new peat cores, four were selected for pollen analysis, supported by 15 radiocarbon dates. The dataset includes supporting stratigraphic information for the four peat cores selected for pollen analysis, as well as grid references and peat thicknesses for the other sampling points.
DOI: 10.6084/m9.figshare.1554748.v14
title: Elsevier embargo periods, 2013-2018

description: This dataset contains all journal embargo periods published by Elsevier in 2013, 2014, 2015, 2016, 2017, and 2018, for both UK and non-UK authors. It also contains a set of notes on the overall statistics, plus annual changes between lists.<br> In summary, 87.9% of currently published Elsevier journals (in early 2018) offer a twelve-month or less embargo period for UK authors, and 58.6% for non-UK authors. Weighted by publication volume, it was around 88% of papers for UK authors in 2017, generally consistent with the journal-level data.<br><br>Since the first general list was published in 2013, the general trend has been to add more journals to the list and (gradually) lower embargo periods; in 2015 and 2016 this has included a substantial increase in zero-embargo titles. The majority of journals have a stated embargo period and in most cases it has been reasonably stable since 2015. There has been a noticeable reduction in active titles in 2018, meaning the percentage of active journals with suitable embargos has decreased, but these journals appear to have had a low publication volume and so the overall effect is relatively minor.<br><br> A number of substantial anomalies developed between the lists in 2013 and 2014, with journals being removed or having their embargo periods extended. These have since been created, but around a dozen mismatches have reappeared in the late-2017/early-2018 version of the lists.
DOI: 10.6084/m9.figshare.3526367.v1
title: Appendix A. A list of the 53 tree species included in the study with their juvenile light requirements and leaf traits.

description: A list of the 53 tree species included in the study with their juvenile light requirements and leaf traits.
DOI: 10.6084/m9.figshare.7898033.v1
title: gVCF_HG03300

description: 1000 Genomes gVCF mapped to hs37d5 for HG03300. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/6kxx25k4yh
title: Qualitative Research prevalence over time

description: Spreadsheets about Qualitative Research prevalence over time. These spreadsheets contain the data used in the figures of the following paper, plus over 100 additional figures. Is research with qualitative data more prevalent and impactful now? Interviews, case studies, focus groups and ethnographies. Library & Information Science Research.
DOI: 10.6084/m9.figshare.12957194.v1
title: Extinction of threatened vertebrates will lead to idiosyncratic changes in functional diversity across the world

description: Data for calculating the functional diversity of terrestrial vertebrates (mammals, birds, reptiles, amphibians and freshwater fishes) for the six biogeographic realms. There is also scripts to simulate the loss of threatened species in the functional diversity
DOI: 10.6084/m9.figshare.14406128.v2
title: Test system data as described in "Test Distribution Systems: Network Parameters and Diagrams of Electrical Structural"

description: Here are the fifteen test distribution networks, as described in the paper "Fifteen Test Distribution Systems: Network Parameters and Diagrams of Electrical Structural "<br><br>They are provided in AMPL and MATPOWER format.<br><br>These system are presented as-is and without warranty, and we accept no blame for any errors that may be present.<br><br>Also included are test system diagrams and the MATLAB scripts that were used to create them.<br>
DOI: 10.6084/m9.figshare.27701211.v1
title: 3.0 mg/mL spheroid invasion z-stack images

description: MDA-MB-231 Spheroid Tumor Invasion Imaging. 15 Minute Resolution. Embedded in 3.0 mg/mL Collagen Type I ECM.
DOI: 10.6084/m9.figshare.29146055.v1
title: Arrive checklist (Hepatoprotective potential of N-acetyl cysteine in rats with phenytoin induced liver injury).pdf

description: Phenytoin is an anticonvulsant medication that is effective in treating various seizure disorders. It is mostly metabolized by the liver, which increases the risk of phenytoin-induced hepatotoxicity.
DOI: 10.17632/bz65dz2pbj
title: A Dataset of Common Asian Fruits for Quality Grading and Biodiversity Research

description: Description:

"A Dataset of Common Asian Fruits for Quality Grading and Biodiversity Research" is a comprehensive dataset designed to facilitate advanced research in fruit quality assessment and biodiversity analysis. This dataset includes 3167 samples across six popular Asian fruit types: apple, banana, Burmese grape, mango, papaya, and tomato. Each fruit sample is categorized into three quality grades: good, medium, and bad. This structured categorization enables precise quality grading, providing a valuable reference for understanding the different quality standards for these fruits.

Purpose of the Dataset:
Support for Research and Development: Facilitates studies in quality grading and biodiversity analysis.
Machine Learning Applications: Provides a well-labeled collection to aid in creating and testing algorithms for automated fruit grading.
Biodiversity Insights: Enables the study of variations and characteristics across different Asian fruit species.
Agricultural Improvement: Assists in enhancing agricultural practices through better quality assessment.
Food Quality Control: Contributes to advancing food quality control systems by offering consistent quality grading data.
Biodiversity Knowledge: Helps researchers and practitioners gain insights into fruit biodiversity.

Data Collection Location:
Local markets throughout Bangladesh, including Karwan Bazar (Tejgon, Dhaka-1225), Park Bajar (Tangail 
Sadar, Tangail-1900), Santos Bazar (University Road, Tangail-1902), and Jatrabari Bazar (Dhaka-1232).
DOI: 10.17632/ckcxcjw8j3
title: Sensory and motor representations of internalized rhythms in the cerebellum and basal ganglia

description: Dataset for Kameda et al., 2023 PNAS
DOI: 10.6084/m9.figshare.21946367.v1
title: chip.bam

description: example .bam format file from ChIP-seq data
DOI: 10.15468/dl.8gdb3f
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Euphorbia pulcherrima Willd. ex Klotzsch"
 ]
}

 The dataset includes 992 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013047-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23726223.v1
title: PCR示范数据

description: 示范数据 <br>
DOI: 10.6084/m9.figshare.26825587.v1
title: The chromosome-scale genome of <i>Magnolia sieboldii</i> K. Koch provides insight into the evolutionary position of magnoliids and seed germination

description: <i>Magnolia sieboldii</i> K. Koch (<i>M. sieboldii</i>) stands as an elegant tree species within the Magnoliaceae family, esteemed for its exquisite beauty, cultural significance, and economic advantages. The species faces challenges in seed germination under natural conditions, primarily attributed to morphological dormancy. Despite its significance, the molecular mechanisms governing <i>M. sieboldii</i> seed germination remain elusive, compounded by the absence of genomic resources specific to this species. In this study, we present the first chromosome-scale genome assembly of <i>M. sieboldii</i>, with a total genome size of 2.01 Gb including 1,096 scaffolds assigned on 19 chromosomes (N50 = 102.4 Mb). Phylogenetic analyses, incorporating 13 plant species, illuminate the evolutionary independence of Magnoliids from monocots and eudicots, positioning them as a sister clade. Through RNA-seq analysis, we identify pivotal genes and pathways contributing to seed dormancy and germination. In addition, our investigation delves into the FAR1 (the far-red-impaired response) transcription factor gene family, revealing their enrichment throughout evolution and their involvement in the intricate process of seed germination. This comprehensive genome sequencing initiative offers invaluable insights into the biological attributes of <i>M. sieboldii</i>, with a specific emphasis on unraveling the complexities of seed dormancy and germination.
DOI: 10.6084/m9.figshare.2002197.v2
title: Ontology Editing and Creating Semantic Applications

description: As an integrated ontology editor and semantic web application, Vitro provides the flexible, ontology-­neutral technology at the core of VIVO. This workshop will introduce Vitro as an independent application through a combination of demonstrations and hands­‐on exercises. Workshop participants will gain an appreciation of Vitro’s power and flexibility as a tool for ontology and data management, data browsing, and searching. They will acquire practical skills in installing, configuring, and using the software to create a working prototype of a semantic web application. Bring an idea for an ontology-driven application, explore iterative refinements to an ontology and simple software customizations, and gain insights into how VIVO builds on Vitro.
DOI: 10.6084/m9.figshare.23653296.v1
title: models.zip

description: Pre-trained models from the paper: Thomas, A., Ré, C., & Poldrack, R. (2022). Self-supervised learning of brain dynamics from broad neuroimaging data. Advances in Neural Information Processing Systems, 35, 21255-21269.
DOI: 10.6084/m9.figshare.27106078.v1
title: Complementary human gene interaction maps from radiation hybrids and CRISPRi v2

description: The only comprehensive genetic interaction map of the human genome was constructed using increased gene copy number in radiation hybrid (RH) cells. More recently, interactions restricted to essential genes were identified using loss-of-function alleles made by CRISPRi technology. I compared the two maps to understand their similarities and differences. Both maps overlapped significantly with a database of protein-protein interactions. However, interactions in the RH and CRISPRi datasets had no significant overlap, even though the participating genes overlapped significantly. In addition, the RH map showed highly significant similarity with an interaction map constructed from genome-wide association studies (GWASs), while the CRISPRi map did not. This study reveals that gain- and loss-of-function alleles highlight different aspects of the genetic interaction landscape.
DOI: 10.6084/m9.figshare.27174192.v1
title: Exploring Sustainable Urban Environments: A Comparative Study of Wayfinding Signage Design and Visual Preferences between Designers and Non-Designers

description: In increasingly complex urban environments, as the costs and challenges of infrastructure upgrades rise, wayfinding signage has become an effective solution due to its low cost and high flexibility. However, the significant differences in design perception between professional designers and non-designers are overlooked, which may result in signage failing to meet the diverse needs of users, ultimately diminishing the overall functionality and experience of urban spaces. This study compares the visual preferences of both groups regarding text, shapes, color coding, and patterns,. The results show that designers prioritize functionality and clarity to ensure the effective use of signage in complex urban environments, while non-designers place more emphasis on reflect local cultural symbols and characteristics. These differences not only reveal varying expectations of urban environments but also influence the sustainable integration of signage into the urban landscape. These differences is crucial for developing design strategies that balance functionality, aesthetics, and sustainability.
DOI: 10.6084/m9.figshare.7289687.v1
title: Expt Gap Data

description: Experimental band gap of 6354 inorganic semiconductors.<br>Data is available as Monty Encoder encoded JSON and as the source CSV file. Recommended access method is with the matminer Python package using the datasets module.<br>Note on citations: If you found this dataset useful and would like to cite it in your work, please be sure to cite its original sources below rather than or in addition to this page.<br>Dataset discussed in and sourced from the supplementary information of:Predicting the Band Gaps of Inorganic Solids by Machine LearningYa Zhuo , Aria Mansouri Tehrani , and Jakoah Brgoch* Department of Chemistry, University of Houston, Houston, Texas 77204, United StatesJ. Phys. Chem. Lett., 2018, 9 (7), pp 1668–1673<strong>DOI: </strong>10.1021/acs.jpclett.8b00124Publication Date (Web): March 13, 2018Copyright © 2018 American Chemical Society
DOI: 10.15468/dl.dxtzpx
title: Occurrence Download

description: A dataset containing 31710 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus esculentus L."
 ]
}

 The dataset includes 31710 records from 850 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013044-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/536dxtzdkc
title: Racah's outer multiplicity formula

description: Title of program: RACOUT Catalogue Id: AAAG_v1_0 Nature of problem To find the decomposition of the tensor product of two irreducible representations of a complex simple Lie algebra into a direct sum of irreducible representations. Versions of this program held in the CPC repository in Mendeley Data AAAG_v1_0; RACOUT; 10.1016/0010-4655(74)90059-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.19635414.v1
title: Research on the Network Characteristics of Innovation Ecosystem, Knowledge Collaboration and Enterprise Innovation

description: In the innovation ecosystem, the external network can provide heterogeneous knowledge resources for enterprise innovation, which is of great significance to the innovation of enterprises. This paper takes the innovation ecosystem as the boundary of the research paradigm. Based on innovation ecosystem theory, knowledge management theory and enterprise innovation theory, we construct a moderated mediation model of the network characteristics of innovation ecosystem, knowledge collaboration and enterprise innovation. According to the survey data of 321 enterprises in the Chinese strategic emerging industries, this model is tested by using the analytic hierarchy process.