cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ms3kf6x
title: MassIVE MSV000100688 - Novel insights into conserved biomineralization mechanisms revealed from a cold-water scleractinian coral skeletal proteome
title: Stony corals exhibit striking morphological plasticity across diverse ecological contexts and trophic modes, raising fundamental questions about conservation of their biomineralization machinery. Here, we characterize the skeletal organic matrix (SOM) of the cosmopolitan cold-water, asymbiotic coral Desmophyllum pertusum compared with proteomes of a facultatively photosymbiotic temperate coral and an obligately photosymbiotic subtropical coral. Across this spectrum, we observe convergence on a shared "biomineralization toolkit," including evidence for extracellular protein transport via vesicle-mediated and cytoskeletal pathways. Newly predicted architectures expand the repertoire of acidic proteins, suggesting additional roles in stabilizing amorphous calcium carbonate and buffering protons within specialized vesicles. Together, our proteomic and structural analyses refine the stony coral biomineralization model from a static list of matrix components to a coordinated network of pathways and establish D. pertusum as a model for dissecting the molecular mechanisms underlying coral calcification, the basis of "vital effects", and their sensitivity to ocean change.
DOI: 10.5281/zenodo.18448428
title: PUDL Raw Mine Safety and Health Administration (MSHA) Mines

description: The Mine dataset lists all Coal and Metal/Non-Metal mines under MSHA's jurisdiction. It includes such information as the current status of each mine (Active, Abandoned, NonProducing, etc.), the current owner and operating company, commodity codes and physical attributes of the mine. Archived from 
https://arlweb.msha.gov/OpenGovernmentData/OGIMSHA.asp

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.15468/dl.pkf5nz
title: Occurrence Download

description: A dataset containing 1607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Allium angulosum, Allium angulosum, Allium angulosum, Allium angulosum, Allium angulosum, Allium angulosum, Allium acutangulum, Allium acutangulum, Allium acutangulum, Allium acutangulum)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1607 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007341-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk7sxv
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Soulamea amara",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 66 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007343-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18448416
title: PUDL Raw EIA Form 930 -- Hourly and Daily Balancing Authority Operations Report

description: The EIA Form 930 provides hourly demand and generation statistics by balancing area (or sub-balancing area in the case of some larger areas). These statistics include a breakdown by energy source (coal, gas, hydro, wind, solar, etc.) as well as interchange between the balancing areas, including international exchanges with Canada and Mexico. Archived from 
https://www.eia.gov/electricity/gridmonitor/

This archive contains raw input data for the Public Utility Data Liberation (PUDL)
software developed by Catalyst Cooperative. It is
organized into Frictionless
Data Packages. For additional information about this data and PUDL, see the
following resources:


  
The PUDL Repository on GitHub
  
PUDL Documentation
  
Other Catalyst Cooperative data archives
DOI: 10.15468/dd.tpanf6
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.15468/dl.rdp77u
title: Occurrence Download

description: A dataset containing 110737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is one of (USA.38.20_1, USA.38.22_1, USA.38.18_1, USA.38.10_1, USA.38.9_1, USA.38.16_1, USA.38.14_1, USA.38.3_1)",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 110737 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021387-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29242652
title: Supplementary material from "Adult predation shapes the evolution of swimming performance in guppies (Poecilia reticulata)"

description: Table S2. Outcomes of statistical models for the critical swimming speed (Ucrit) of females compared with males. Number of observations: 428
DOI: 10.6084/m9.figshare.29242652.v1
title: Supplementary material from "Adult predation shapes the evolution of swimming performance in guppies (Poecilia reticulata)"

description: Table S2. Outcomes of statistical models for the critical swimming speed (Ucrit) of females compared with males. Number of observations: 428
DOI: 10.6084/m9.figshare.29242655
title: Supplementary material from "Adult predation shapes the evolution of swimming performance in guppies (Poecilia reticulata)"

description: Table S1. Outcomes of statistical models for the standard length of females and males that were subjected to three generations of artificial selection for adult predation survival vs their control lines.
DOI: 10.6084/m9.figshare.29242655.v1
title: Supplementary material from "Adult predation shapes the evolution of swimming performance in guppies (Poecilia reticulata)"

description: Table S1. Outcomes of statistical models for the standard length of females and males that were subjected to three generations of artificial selection for adult predation survival vs their control lines.
DOI: 10.5061/dryad.js957
title: Data from: Gape-limited predators as agents of selection on the defensive morphology of an invasive invertebrate

description: Invasive species have widespread and pronounced effects on ecosystems and
 adaptive evolution of invaders is often considered responsible for their
 success. Despite the potential importance of adaptation to invasion, we
 still have limited knowledge of the agents of natural selection on
 invasive species. Bythotrephes longimanus, a cladoceran zooplankton,
 invaded multiple Canadian Shield lakes over the past several decades.
 Bythotrephes have a conspicuous caudal process (tail spine) that provides
 a morphological defense against fish predation. We measured viability
 selection on the longest component of the Bythotrephes spine, the distal
 spine segment, through a comparison of the lengths of first and second
 instar Bythotrephes collected from lakes differing in the dominance of
 gape-limited predation (GLP) and non-gape-limited predation (NGLP) by
 fish. We found that natural selection varied by predator gape-limitation,
 with strong selection (selection intensity: 0.20-0.79) for increased
 distal spine length in lakes dominated by GLP, and no significant
 selection in lakes dominated by NGLP. Further, distal spine length was 17%
 longer in lakes dominated by GLP, suggesting the possibility of local
 adaptation. As all study lakes were invaded less than twenty years prior
 to our collections, our results suggest rapid divergence in defensive
 morphology in response to selection from fish predators.
description: Morphological
 Measurements of Bythotrephes in Canadian Shield LakesBythotrephes Morphological
 Measurements Canadian Shield Lakes.csv
DOI: 10.5061/dryad.5fn84
title: Data from: Matching-centrality decomposition and the forecasting of new links in networks

description: Networks play a prominent role in the study of complex systems of
 interacting entities in biology, sociology, and economics. Despite this
 diversity, we demonstrate here that a statistical model decomposing
 networks into matching and centrality components provides a comprehensive
 and unifying quantification of their architecture. The matching term
 quantifies the assortative structure in which node makes links with which
 other node, while the centrality term quantifies the number of links that
 nodes make. We show, for a diverse set of networks, that this
 decomposition can provide a tight fit to observed networks. Then we
 provide three applications. First, we show that the model allows very
 accurate prediction of missing links in partially known networks. Second,
 when node characteris- tics are known, we show how the matching-centrality
 decomposition can be related to this external information. Consequently,
 it offers a simple and versatile tool to explore how node characteristics
 ex- plain network architecture. Finally, we demonstrate the efficiency and
 flexibility of the model to forecast the links that a novel node would
 create if it were to join an existing network.
description: Network
 datadata.zip
DOI: 10.5061/dryad.309t3
title: Data from: Microsatellites for the marsh Fritillary butterfly: de novo transcriptome sequencing, and a comparison with amplified fragment length polymorphism (AFLP) markers

description: BACKGROUND: Until recently the isolation of microsatellite markers from
 Lepidoptera has proved troublesome, expensive and time-consuming.
 Following on from a previous study of Edith's checkerspot butterfly,
 Euphydryas editha, we developed novel microsatellite markers for the
 vulnerable marsh fritillary butterfly, E. aurinia. Our goal was to
 optimize the process in order to reduce both time and cost relative to
 prevailing techniques. This was accomplished by using a combination of
 previously developed techniques: in silico mining of a de novo assembled
 transcriptome sequence, and genotyping the microsatellites found there
 using an economic method of fluorescently labelling primers. PRINCIPAL
 FINDINGS: In total, we screened nine polymorphic microsatellite markers,
 two of which were previously published, and seven that were isolated de
 novo. These markers were able to amplify across geographically isolated
 populations throughout Continental Europe and the UK. Significant
 deviations from Hardy-Weinberg equilibrium were evident in some
 populations, most likely due to the presence of null alleles. However, we
 used an Fst outlier approach to show that these markers are likely
 selectively neutral. Furthermore, using a set of 128 individuals from 11
 populations, we demonstrate consistency in population differentiation
 estimates with previously developed amplified fragment length polymorphism
 (AFLP) markers (r = 0.68, p&lt;0.001). SIGNIFICANCE: Rapid development
 of microsatellite markers for difficult taxa such as Lepidoptera, and
 concordant results with other putatively neutral molecular markers,
 demonstrate the potential of de novo transcriptional sequencing for future
 studies of population structure and gene flow that are desperately needed
 for declining species across fragmented landscapes.
description: auriniarawdataThe data file consists of microsatellite allele lengths for 9 loci described in the paper. The data file has individuals organized in rows, with the name of the population in the first column. The subsequent 18 columns correspond to microsatellite data (two columns per locus). Missing data are coded by zeros.
DOI: 10.5061/dryad.64797qm
title: Data from: C4 savanna grasses fail to maintain assimilation in drying soil under low CO2 compared with C3 trees despite lower leaf water demand

description: 1) C4 photosynthesis evolved when grasses migrated out of contracting
 forests under a declining atmospheric CO2 concentration ([CO2]a) and
 drying climate around 30 million years ago. C4 grasses are hypothesised to
 benefit from improved plant–water relations in open habitats like
 savannas, giving advantages over C3 plants under low [CO2]a. But
 experimental evidence in a low CO2 environment is limited and comparisons
 with C3 trees are needed to understand savanna vegetation patterns. 2) To
 test whether stomatal conductance (gS) and CO2 assimilation (A) are
 maintained in drier soil for C4 grasses than C3 trees, particularly under
 low [CO2]a, we investigated photosynthesis and plant–water relations of
 three C3 tree and three C4 grass species grown at 800, 400 or 200 ppm
 [CO2]a over moderate wetting–drying cycles. 3) C4 grasses had a lower
 soil–to–leaf water potential gradient than C3 trees, especially at 200 ppm
 [CO2]a, indicating reduced leaf water demand relative to supply. Yet the
 dependence of gS and A on predawn leaf water potential (a measure of soil
 water availability) was greater for the C4 grasses than trees,
 particularly under low [CO2]a. 4) Our findings establish that gS and A are
 not maintained in drier soil for C4 grasses compared with C3 trees,
 suggesting that this mechanism was not prevailing in the expansion of
 C4–dominated grasslands under low [CO2]a. This inherent susceptibility to
 sudden decreases in soil water availability justifies why C4 grasses have
 not evolved a resistant xylem allowing operation under drought, but
 instead shut down below a water potential threshold and rapidly recover.
 We point to this capacity to respond to transient water availability as a
 key overlooked driver of C4 grass success under low [CO2]a.
description: Collated_dataset_Quirk_et_al_2018_functional_ecology_JQ
DOI: 10.5061/dryad.1t6d0
title: Data from: Protection of large predators in a marine reserve alters size-dependent prey mortality

description: Where predator–prey interactions are size-dependent, reductions in
 predator size owing to fishing has the potential to disrupt the ecological
 role of top predators in marine ecosystems. In southern California kelp
 forests, we investigated the size-dependence of the interaction between
 herbivorous sea urchins and one of their predators, California sheephead
 (Semicossyphus pulcher). Empirical tests examined how differences in
 predator size structure between reserve and fished areas affected
 size-specific urchin mortality. Sites inside marine reserves had greater
 sheephead size and biomass, while empirical feeding trials indicated that
 larger sheephead were required to successfully consume urchins of
 increasing test diameter. Evaluations of the selectivity of sheephead for
 two urchin species indicated that shorter-spined purple urchins were
 attacked more frequently and successfully than longer-spined red urchins
 of the same size class, particularly at the largest test diameters. As a
 result of these size-specific interactions and the higher biomass of large
 sheephead inside reserves, urchin mortality rates were three times higher
 inside the reserve for both species. In addition, urchin mortality rates
 decreased with urchin size, and very few large urchins were successfully
 consumed in fished areas. The truncation of sheephead size structure that
 commonly occurs owing to fishing will probably result in reductions in
 urchin mortality, which may reduce the resilience of kelp beds to urchin
 barren formation. By contrast, the recovery of predator size structure in
 marine reserves may restore this resilience, but may be delayed until fish
 grow to sizes capable of consuming larger urchins.
description: Sheephead Predation
 Trial ResultsResults of field
 predation trials in which 15 urchins of three size classes (S,M,L) and two
 species (R, P) were presented in prey choice arenas. The size of sheephead
 attacking and consuming urchins in the arenas were recorded inside and
 outside of reserves at Catalina Island in August 2010.Attacks_Raw_edit.csvSheephead Surveys at CatalinaSheephead abundance and size distribution were quantified using SCUBA surveys in August 2010 and August 2011. Fish were surveyed on five 30 m × 2 m transects conducted in two reef zones (the inner [~10 m depth] and outer [~15 m depth] edges of the kelp bed at each site) in each year. Sizes were estimated visually to the nearest cm (total length [TL]) by divers experienced in estimating fish lengths.SPUL_2010_2011_CATALINA_dryad.csv
DOI: 10.5061/dryad.rg817
title: Data from: Climatic conditions cause complex patterns of covariation between demographic traits in a long-lived raptor

description: 1. Environmental variation can induce life-history changes that can last
 over a large part of the lifetime of an organism. If multiple demographic
 traits are affected, expected changes in climate may influence
 environmental covariances among traits in a complex manner. Thus,
 examining the consequences of environmental fluctuations requires that
 individual information at multiple life stages is available, which is
 particularly challenging in long-lived species. 2. Here, we analyse how
 variation in climatic conditions occurring in the year of hatching of
 female goshawks Accipiter gentilis (L.) affects age-specific variation in
 demographic traits and lifetime reproductive success (LRS). LRS decreased
 with increasing temperature in April in the year of hatching, due to lower
 breeding frequency and shorter reproductive life span. In contrast, the
 probability for a female to successfully breed was higher in years with a
 warm April, but lower LRS of the offspring in these years generated a
 negative covariance among fecundity rates among generations. 3. The
 mechanism by which climatic conditions generated cohort effects was likely
 through influencing the quality of the breeding segment of the population
 in a given year, as the proportion of pigeons in the diet during the
 breeding period was positively related to annual and LRS, and the diet of
 adult females that hatched in warm years contained fewer pigeons. 4.
 Climatic conditions experienced during different stages of individual life
 histories caused complex patterns of environmental covariance among
 demographic traits even across generations. Such environmental covariances
 may either buffer or amplify impacts of climate change on population
 growth, emphasizing the importance of considering demographic changes
 during the complete life history of individuals when predicting the effect
 of climatic change on population dynamics of long-lived species.
description: Goshawk life history
 dataData collected in the
 field by Jan T. Nielsen on individual female goshawks. For more details
 regarding field procedures, see the following literature: Nielsen, J. T.,
 and J. Drachmann. 1999. Prey selection of Goshawks Accipiter gentilis
 during the breeding season in Vendsyssel, Denmark. Dansk Ornitologisk
 Forenings Tidsskrift 93:85–90; Nielsen, J. T., and J. Drachmann. 2003.
 Age-dependent reproductive performance in Northern Goshawks Accipiter
 gentilis. Ibis 145:1–8.GoshawkSharedData.xlsx
DOI: 10.5061/dryad.4g7qh
title: Data from: Spatial and temporal dynamics and value of nature-based recreation, estimated via social media

description: Conserved lands provide multiple ecosystem services, including
 opportunities for nature-based recreation. Managing this service requires
 understanding the landscape attributes underpinning its provision, and how
 changes in land management affect its contribution to human wellbeing over
 time. However, evidence from both spatially explicit and temporally
 dynamic analyses is scarce, often due to data limitations. In this study,
 we investigated nature-based recreation within conserved lands in Vermont,
 USA. We used geotagged photographs uploaded to the photo-sharing website
 Flickr to quantify visits by in-state and out-of-state visitors, and we
 multiplied visits by mean trip expenditures to show that conserved lands
 contributed US $1.8 billion (US $0.18–20.2 at 95% confidence) to Vermont’s
 tourism industry between 2007 and 2014. We found eight landscape
 attributes explained the pattern of visits to conserved lands; visits were
 higher in larger conserved lands, with less forest cover, greater trail
 density and more opportunities for snow sports. Some of these attributes
 differed from those found in other locations, but all aligned with our
 understanding of recreation in Vermont. We also found that using
 temporally static models to inform conservation decisions may have
 perverse outcomes for nature-based recreation. For example, static models
 suggest conserved land with less forest cover receive more visits, but
 temporally dynamic models suggest clearing forests decreases, rather than
 increases, visits to these sites. Our results illustrate the importance of
 understanding both the spatial and temporal dynamics of ecosystem services
 for conservation decision-making.
description: Conserved lands data
 used in linear regression models.The file contains photo
 user days, survey user days and landscape attributes for conserved lands
 in Vermont, USA.Online_data_final.xlsx