cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q1kf0
title: Data from: From refugia to rookeries: phylogeography of Atlantic green turtles

description: Investigating species’ distribution and abundance over time is central to
 evolutionary biology, and provides important context for conservation and
 management. With respect to population genetic structure in green sea
 turtles (Chelonia mydas), certain processes such as female philopatry to
 natal rookeries are well understood, while others, such as male philopatry
 and historical changes in distribution and abundance, remain relatively
 understudied. Further, although inferences from mitochondrial DNA and
 nuclear microsatellites have both been critical in identifying management
 units, comparisons of these units based on both markers are still rare.
 Here we analyzed novel data from fifteen microsatellite markers gathered
 at six green turtle rookeries in the western Atlantic as well as
 previously published mitochondrial sequences from 13 regional rookeries.
 We detected low, but significant, population structure at microsatellite
 loci, which coincides with previous delineations of local and regional
 management units as well as reports of male philopatry. However, we also
 detected a discord between nuclear and mitochondrial data, in which two
 tropical rookeries (Aves Island, Venezuela; and Matapica, Surinam)
 clustered with the Caribbean and Mediterranean based on microsatellite
 data, but displayed a mitochondrial lineage characteristic of the southern
 Atlantic and Africa. To investigate the possible causes of this discord,
 we used both classical and Bayesian methods to estimate historical
 migration rates and the timing and magnitude of changes in population
 size. We detected a strong barrier to dispersal between the northern and
 southern Atlantic, as well as an expansion in the southern mitochondrial
 lineage during the Wisconsin glacial period and a later expansion in the
 northern lineage following the Last Glacial Maximum. We propose that the
 Aves and Surinam rookeries were colonized by females from a southern
 glacial refugium, after which they experienced gene flow from the
 Caribbean. This study highlights the utility of incorporating data from
 multiple types of molecular markers in accurately identifying conservation
 units and in elucidating the complex historical and contemporary processes
 underlying population genetic structure in marine species.
description: Microsatellite data
 fileMicrosatellite data from
 green sea turtles of six Atlantic rookeries at fifteen
 loci.SeaTurtle msat master final
 3.xlsArlequin microsatellite
 input fileArlequin microsatellite
 input file from six Chelonia mydas rookeries in the Atlantic, for 15
 loci.082713crooks6fst.arpDNAsp compressed fileMtDNA haplotype data for 13 Atlantic/Mediterranean Chelonia mydas rookeries, from the published literature (see Figure 1 for references).DNAsp.zip
DOI: 10.5061/dryad.nk842s5
title: Data from: The effect of sexual selection on adaptation and extinction under increasing temperatures

description: Strong sexual selection has been reported to both enhance and hinder the
 adaptive capacity and persistence of populations when exposed to novel
 environments. Consequently, how sexual selection influences population
 adaption and persistence under stress remains widely debated. Here we
 present two empirical investigations of the fitness consequences of sexual
 selection on populations of the Indian meal moth, Plodia interpunctella,
 exposed to stable or gradually increasing temperatures. When faced with
 increasing temperatures strong sexual selection was associated with both
 increased fecundity and offspring survival compared to populations
 experiencing weak sexual selection, suggesting sexual selection acts to
 drive adaptive evolution by favouring beneficial alleles. Strong sexual
 selection did not, however, delay extinction when the temperature became
 excessively high. By manipulating individuals’ mating opportunities during
 fitness assays we were able to assess the effect of multiple mating
 independently from the effect of population-level sexual selection, and
 found that polyandry has a positive effect on both fecundity and offspring
 survival under increasing temperatures in those populations evolving with
 weak sexual selection. Within stable temperatures there were some benefits
 from strong sexual selection but these were not consistent across the
 entire experiment, possibly reflecting changing costs and benefits of
 sexual selection under stabilising and directional selection. These
 results indicate that sexual selection can provide a buffer against
 climate change and increase adaptation rates within a continuously
 changing environment. These positive effects of sexual selection may
 however be too small to protect populations and delay extinction when
 environmental changes are relatively rapid.
description: JParrett_KnellR_data_increasing_temperature_experiementOffspring survival, fecundity and longevity data from increasing temperature experimentJParrett_KnellR_data_stable_temperature_experiemntOffspring survival, fecundity and longevity data from stable temperature experiment
DOI: 10.5281/zenodo.18421957
title: Hologenomic structure of bacterial and fungal communities in the West Nile virus vector Culex tarsalis

description: This dataset contains metadata, microbiome community data, population genetic data, and analysis scripts used to investigate the hologenomic structure of bacterial and fungal communities in the West Nile virus vector Culex tarsalis across the western United States. The archive includes population and sample level metadata, Bray Curtis dissimilarity matrices, pairwise FST matrices derived from PoolRADseq data, geographic distance matrices, and R scripts for Mantel tests examining relationships among microbiome composition, host population genetic structure, and geography. Raw sequencing data are available via the NCBI Sequence Read Archive under BioProject accession PRJNA1405141.
DOI: 10.5281/zenodo.18421958
title: Hologenomic structure of bacterial and fungal communities in the West Nile virus vector Culex tarsalis

description: This dataset contains metadata, microbiome community data, population genetic data, and analysis scripts used to investigate the hologenomic structure of bacterial and fungal communities in the West Nile virus vector Culex tarsalis across the western United States. The archive includes population and sample level metadata, Bray Curtis dissimilarity matrices, pairwise FST matrices derived from PoolRADseq data, geographic distance matrices, and R scripts for Mantel tests examining relationships among microbiome composition, host population genetic structure, and geography. Raw sequencing data are available via the NCBI Sequence Read Archive under BioProject accession PRJNA1405141.
DOI: 10.15468/dl.phvgmp
title: Occurrence Download

description: A dataset containing 66477 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Uta stansburiana [GBIF Backbone Taxonomy], Uta stansburiana elegans [GBIF Backbone Taxonomy], Uta stansburiana stansburiana [GBIF Backbone Taxonomy], Uta stansburiana nevadensis [GBIF Backbone Taxonomy], Uta stansburiana stejnegeri [GBIF Backbone Taxonomy], Uta stansburiana uniformis [GBIF Backbone Taxonomy], Uta stansburiana taylori [GBIF Backbone Taxonomy], Uta stansburiana martinensis [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 66477 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000765-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t847sw
title: Occurrence Download

description: A dataset containing 27858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Geometry POLYGON((-119.42937 32.83945,-82.94421 30.11495,-47.67788 47.84599,-63.05072 63.91457,-68.23974 74.43611,-141.737 74.63213,-168.29712 71.60175,-172.00862 61.89621,-163.24663 48.51946,-137.31222 49.97652,-119.42937 32.83945))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alces alces"
 ]
}

 The dataset includes 27858 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000768-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31198237.v1
title: Images for AntiFlu paper - SNA Binding Assay and Glycosidases Assay

description: Raw confocal TIFF images.
DOI: 10.6084/m9.figshare.31198237
title: Images for AntiFlu paper - SNA Binding Assay and Glycosidases Assay

description: Raw confocal TIFF images.
DOI: 10.15139/s3/o1jwna
title: Data Management and Sharing Plan for: Collaborative Research: Constraining dark matter with globular clusters and stellar streams

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.234d4p
title: Occurrence Download

description: A dataset containing 2641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sternopygus macrurus"
 ]
}

 The dataset includes 2641 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000769-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvq2hf
title: Occurrence Download

description: A dataset containing 768 records in GBIF matching the query:
SELECT
 '610' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 66.79314043790278
 AND decimalLatitude &lt;= 72.77152049497572
 AND decimalLongitude &gt;= -32.399858100975436
 AND decimalLongitude &lt;= -17.960078459264157
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 768 records were derived from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000780-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dmrh3
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Cameroon",
 "TaxonKey is Cochlospermum tinctorium"
 ]
}

 The dataset includes 32 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000770-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/bxdq9b
title: Data Management and Sharing Plan for: A Phase III Adjuvant Trial Evaluating the Addition of Adjuvant Chemotherapy to Ovarian Function Suppression plusEndocrine Therapy in Premenopausal Patients with pN0-1, ER Positive/HER2-Negative Breast Cancer and anOncotype Recurrence Score ? 25

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.7pcabs
title: Occurrence Download

description: A dataset containing 1236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-99.42216 19.00841,-98.725 19.00841,-98.725 19.76999,-99.42216 19.76999,-99.42216 19.00841))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bassariscus astutus"
 ]
}

 The dataset includes 1236 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000771-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/7jl7jn
title: Pipeline Galaxy 16S

description: Galaxy Pipeline for 16S analysis.

This file describes the pipeline used in the Galaxy platform (an open source, web-based platform for data intensive biomedical research; https://usegalaxy.org/). This pipeline was intented to analyze chromatogram files and to edit the bacterial 16S rRNA gene sequence associated with the different bacterial isolates from our publication. 

The main outcome was the consensus sequence used afterward in the NCBI Blast database.
description: Publication linked to the data has not been published yet.
DOI: 10.5281/zenodo.18404157
title: Electrified bar racks for fish protection at water intakes - risk of fish injuries due to electric fields

description: 01_Flume and Racks – Blueprints and photos of the Flume and the used intake rack configurations.

02_Waveforms measured – Plots of all waveforms, measured on electrodes with opposite polarity. 

03_Documentation experiments – Excel document containing the following:

·         Information on individual fish (species, total length, width, weight, date of arrival)

·         Summary and plots of fish size distribution

·         Information on experimental group and observed injuries per fish (dark discolourations, spinal injuries, haemorrhages, descriptions of chronical and acute anomalies)

·         Summary and plots of observed injury incidence per experimental group

04_Videos of fish interactions – Compiled videos consisting of all individual rack interactions observed for the tested configurations. 

05_Photos of dark discolourations – Photos of all fish with observed dark skin discolourations taken directly after an experiment. For configuration DS1/Passage no dark discolourations were observed. 

06_Photos of haemorrhages – Photos of filets of all fish with observed haemorrhages. For the configurations R3/Non-Passage and DS1/Passage no haemorrhages were observed. 

06_Photos of haemorrhages – Photos of filets of all fish with observed haemorrhages. For the configurations R3/Non-Passage and DS1/Passage no haemorrhages were observed.

07_Boxplot_TL - Size distribution of fish over experimental groups.
DOI: 10.5281/zenodo.18404158
title: Electrified bar racks for fish protection at water intakes - risk of fish injuries due to electric fields

description: 01_Flume and Racks – Blueprints and photos of the Flume and the used intake rack configurations.

02_Waveforms measured – Plots of all waveforms, measured on electrodes with opposite polarity. 

03_Documentation experiments – Excel document containing the following:

·         Information on individual fish (species, total length, width, weight, date of arrival)

·         Summary and plots of fish size distribution

·         Information on experimental group and observed injuries per fish (dark discolourations, spinal injuries, haemorrhages, descriptions of chronical and acute anomalies)

·         Summary and plots of observed injury incidence per experimental group

04_Videos of fish interactions – Compiled videos consisting of all individual rack interactions observed for the tested configurations. 

05_Photos of dark discolourations – Photos of all fish with observed dark skin discolourations taken directly after an experiment. For configuration DS1/Passage no dark discolourations were observed. 

06_Photos of haemorrhages – Photos of filets of all fish with observed haemorrhages. For the configurations R3/Non-Passage and DS1/Passage no haemorrhages were observed. 

06_Photos of haemorrhages – Photos of filets of all fish with observed haemorrhages. For the configurations R3/Non-Passage and DS1/Passage no haemorrhages were observed.

07_Boxplot_TL - Size distribution of fish over experimental groups.
DOI: 10.15468/dl.tnbjhr
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Calcarius pictus [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Alaska)"
 ]
 }
 ]
}

 The dataset includes 191 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000773-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.33164.37766/1
title: Disordered Eating Behaviors and Weight Recurrence After Metabolic and Bariatric Surgery: Group Differences and a Predictive Model Involving Mindfulness, Self-Compassion, and Quality of Life [database]
DOI: 10.5281/zenodo.18422197
title: Data set of Ontogenetic shifts and trophic differentiation shape dietary diversity in Oxyrhopus false coral snakes
DOI: 10.5281/zenodo.18422198
title: Data set of Ontogenetic shifts and trophic differentiation shape dietary diversity in Oxyrhopus false coral snakes
DOI: 10.15468/dl.6vtcj8
title: Occurrence Download

description: A dataset containing 195767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen, Occurrence evidence)",
 "Geometry POLYGON((-11.43366 32.28337,55.56307 32.28337,55.56307 49.53148,-11.43366 49.53148,-11.43366 32.28337))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Dytiscidae, Noteridae, Haliplidae, Gyrinidae, Hydrophilidae, Helophoridae, Hydrochidae, Georissidae, Spercheidae, Hydraenidae)"
 ]
}

 The dataset includes 195767 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000785-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18201480
title: Biophilic_Scoping_Review_Data
DOI: 10.5281/zenodo.18201481
title: Biophilic_Scoping_Review_Data
DOI: 10.15468/dl.p6emka
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphelandra espirito-santensis)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000774-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/sj8ilq
title: DEPRESS: Dataset on Emotions, Performance, Responses, Environment, Stress, and Satisfaction of Students During COVID-19 Online Education

description: Dataset on Emotions, Performance, Responses, Environment, Stress, and Satisfaction of Students During COVID-19 Online Education
DOI: 10.5281/zenodo.14338882
title: TOPMed MESA multi-ancestry transcriptome prediction models

description: This Zenodo file collection includes three developed transcriptome prediciton models with funtionally informed variants (FIVs) by using TOPMed MESA multi-ancestry participants with TOPMed Freeze 8 whole-genome sequencing (WGS) data and RNA-seq data from peripheral blood mononuclear cells (PBMCs). These prediction models can be used for transcriptome-wide association study (TWAS) analysis by integrating with GWAS summary statistics.

EN-FM: Elastic Net with Fine-Mapped variants. To run EN model on fine-mapped variants, we follow code provided in PrediXcan Github (https://github.com/hakyimlab/PredictDB_Pipeline_GTEx_v7/tree/master/model_training).

PUMICE: Prediction Using Models Informed by Chromatin conformation and Epigenomics; 3D genomic data and epigenomic annotation from EBV-transformed lymphocytes were used to construct PUMICE models. To run PUMICE model, we follow code provided in PUMICE Github (https://github.com/ckhunsr1/PUMICE).

PUMICE-FM: PUMICE with Fine-Mapped variants. To run PUMICE model on fine-mapped variants, we also follow code provided in PUMICE Github (https://github.com/ckhunsr1/PUMICE).

The maunscript is under review. The preprint is here https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5194962.
DOI: 10.6084/m9.figshare.31198270
title: Mental practice improves pass accuracy in elite rugby players

description: Mental practice has been shown to improve motor performance, but its effects in elite sports under constraints remain underexplored. This study examined the impact of mental practice, using imagined or virtual game scenarios, on pass accuracy in elite rugby players. Seventy-five players from national and regional talent development teams were assigned to control (CTRL; <i>n</i> = 17), motor imagery (MI; <i>n</i> = 31), or virtual reality and motor imagery (VRMI; <i>n</i> = 27) groups. Players completed pre- and post-tests assessing pass accuracy at 10, 15, and 20 meters with and without time constraints. The MI and VRMI groups engaged in three mental practice sessions, each including imagined (MI) or virtually observed (VRMI) stressful scenarios (e.g., yellow card) followed by imagined passes. The CTRL group did not practice during this period. Results indicated that mental practice improved pass accuracy under no constraints, with MI and VRMI outperforming CTRL (<i>p</i> &lt; .010). Vividness of motor imagery improved in MI and VRMI groups over sessions (<i>p</i> = .012), but VRMI did not further enhance vividness compared to MI. Under time constraints, pass accuracy at 20 m declined by 9% at pretest for all groups (<i>p</i> = .003). However, mental practice failed to mitigate this decrease at post-test (no interaction with group, <i>p</i> = .937). Three mental practice sessions improved pass accuracy under no constraints but did not counteract time constraint effects. Coaches may consider mental practice to enhance motor accuracy and manage physical workload, though its impact on performance under pressure requires further investigation. Elite rugby players threw more accurate passes after imagining game situations. Mental training worked even without physical effort or VR. But under pressure, performance still dropped, showing that practice under realistic constraints remains essential. Mental practice sessions (20 min, × 3) can be used to improve rugby union pass accuracy without increasing physical workload.Imagery-based training can be implemented without VR, as VR did not enhance accuracy or image vividness.Mental practice alone is insufficient for passes under time pressure; physical practice under constraints remains necessary. Mental practice sessions (20 min, × 3) can be used to improve rugby union pass accuracy without increasing physical workload. Imagery-based training can be implemented without VR, as VR did not enhance accuracy or image vividness. Mental practice alone is insufficient for passes under time pressure; physical practice under constraints remains necessary.