cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3606032_d5.v1
title: Additional file 3: Table S2. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: DE genes and their CCC. List of all DE genes and their time effect FDR adjusted p-value and CCC. In addition, the side of higher expression in most of the time points and the side and hour of the highest level of change in expression per gene are given. The cluster the gene belongs to (from Fig.Â 2c and Additional file 2: Figure S1) is also indicated, as is whether the gene is consistently expressed throughout regeneration (Fig.Â 3a) (XLSX 524Â kb)
DOI: 10.23668/psycharchives.2720
title: Dataset for: Eye gaze patterns reflect how young fraction learners approach numerical comparisons
title: Dataset including raw and analysis files. Additional scripts and analysis files available upon request

description: Dataset for: Miller Singley, Alison T., Crawford, Jeffrey L., & Bunge, Silvia A. (2020). Eye gaze patterns reflect how young fraction learners approach numerical comparisons. Journal of Numerical Cognition, 6(1), 83-107. https://doi.org/10.5964/jnc.v6i1.119
description: Subject Data files: raw files from Tobii eyetracker, filtered fixation lists; Analysis files: Python script used to calculate saccades, aggregated data file that formed basis of statistical analyses
DOI: 10.6084/m9.figshare.c.3606044_d1.v1
title: MOESM1 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 1. Primary data of bacterial adhesion to Plg and BSA (Fig. 1).
DOI: 10.6084/m9.figshare.c.3606032_d6.v1
title: Additional file 5: Table S4. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Metalloproteinase (MP) groups and inhibitors. A list of the major DE MPs identified in the screen with ADAMTS, Astacins, other MPs and their inhibitors. (XLSX 676Â kb)
DOI: 10.6084/m9.figshare.c.3606038_d3.v1
title: Additional file 3 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: MTE primer sequences. Table S3. MTE primer sequences. (XLSX 45.9 kb)
DOI: 10.6084/m9.figshare.c.3606032_d7.v1
title: Additional file 10: Table S7. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: DE genes of different developmental pathways. A list of DE genes of major the developmental pathways that were manually detected (see Methods) and have a CCCâ
DOI: 10.6084/m9.figshare.c.3606044_d2.v1
title: MOESM4 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 4. Primary data of Plg activation by recombinant proteins (Fig. 5).
DOI: 10.17863/cam.6349
title: Research data supporting "Software Prefetching for Indirect Memory Accesses"

description: Source code and benchmarks to implement indirect memory access prefetching in LLVM
DOI: 10.6084/m9.figshare.c.3606044_d3.v1
title: MOESM2 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 2. Primary data of plasminogen binding by FTP library clones (Fig. 2).
DOI: 10.6084/m9.figshare.c.3606038_d5.v1
title: Additional file 2 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: Gene/accession numbers. Table S2. RWE code-set accession numbers. (XLSX 46.8 kb)
DOI: 10.6084/m9.figshare.c.3606032_d9.v1
title: Additional file 4: Table S3. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Enriched GO terms in low CCC genes. GO terms containing similar genes are colored similarly. Additional tabs contain a list of GO annotated low CCC genes belonging to the GO terms mentioned in Fig.Â 4 and a list of all the corresponding GO terms associated with each gene. (XLSX 575Â kb)
DOI: 10.23668/psycharchives.2722
title: Dataset to: Scientific abstracts and plain language summaries in psychology: A comparison based on readability indices.

description: Dataset to: Stricker, J., Chasiotis, A., Kerwer, M, & Günther, A. (submitted 2020). Scientific abstracts and plain language summaries in psychology: A comparison based on readability indices. Manuscript submitted for publication.
description: export_abstracts: PLS and scientific abstracts
DOI: 10.15468/dl.z2mzqy
title: Occurrence Download

description: A dataset containing 39580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampyris noctiluca (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 39580 records from 713 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037678-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606161_d1.v1
title: Additional file 2: of Determinants of stillbirths in Ghana: does quality of antenatal care matter?

description: Distribution of individual components of the ANC quality measure, GMHS (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3606161_d2.v1
title: Additional file 1: of Determinants of stillbirths in Ghana: does quality of antenatal care matter?

description: Distribution of variables for full sample, GMHS (XLSX 50 kb)
DOI: 10.17863/cam.20400
title: Research data supporting "3D printing of masonry structures for centrifuge modelling"

description: Research data supporting "3D printing of masonry structures for centrifuge modelling"
DOI: 10.6084/m9.figshare.c.3606128_d10.v1
title: Additional file 14: of CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

description: Table of genes within GWAS loci predicted for expression in relevant cell types, focusing on loci associated with red blood cell phenotypes, platelet phenotypes, or inflammatory bowel disease (IBD). (XLSX 24 kb)
DOI: 10.17863/cam.109765
title: Dataset for "Organic Semiconductor-BiVO4 Tandem Devices for Solar-Driven H2O and CO2 Splitting"

description: Includes: Main Text Figures - contains subfolders with data grouped according to Figures 1, 2 and 3 (as XLS and PNG files). Supporting Figures - contains subfolders for Figures S2-20 (as CSV, XLS, IBW, ARW, TIFF, JPG and PNG files) OPEC_Opendata_17062024 - contains all processed data and plots used in the main text and SI (as Origin OPJU file) PCE10-EHIDTBR and CoMTPP (Figure S1) - contains molecular structure drawings (as ChemDraw CDX file)
DOI: 10.17863/cam.81112
title: Research data supporting "Sensitisation of colonic nociceptors by TNFα is dependent on TNFR1 expression and p38 MAPK activity"

description: To calculate Ca2+ imaging data, individual cells were circled on a brightfield image and outlines overlaid onto fluorescent images using ImageJ (NIH, MA, USA). Pixel intensity was measured and analysed with custom-written scripts in RStudio (RStudio, MA, USA). Background fluorescence was subtracted from each cell, and fluorescence intensity (F) baseline corrected and normalized to the maximum fluorescence elicited during 50 mM KCl stimulation (Fpos). Maximum KCl fluorescence was denoted as 1 F/Fpos. Further analysis was confined to cells with a fluorescence increase ≥5 standard deviations above the mean baseline before 50 mM KCl application. Neurons were deemed responsive to a drug challenge if a fluorescence increase of 0.1 F/Fpos was seen in response to drug perfusion. The proportion of responsive neurons and magnitude of the fluorescence response was measured for each experiment, with peak responses calculated from averaging fluorescence values of individual neurons at each time point. Immunocytochemistry data was obtained by first using an automatic ‘minimum error’ threshold algorithm on 8-bit images of βIII-tubulin or DAPI staining to distinguish background from objects. Binary and raw images were manually compared, and the threshold manually adjusted to ensure all regions of interest were captured. The threshold was placed at the first minimum after the major peak of the image histogram. Binary images then underwent watershed segmentation to separate distinct objects in proximity. Identified particles, positive for either βIII-tubulin or DAPI, were automatically counted using ImageJ and a ratio of βIII-tubulin-positive cells (neurons) to DAPI-positive cells (neurons and satellite cells) calculated. In electrophysiological recordings, nerve discharge was determined by measuring the number of spikes passing a manually determined threshold twice the level of background noise (typically 60−80 μV) and binned to determine average firing frequency every 10 s. Changes in neuronal firing rates were calculated by subtracting baseline firing (averaged 3 min prior to distension or drug perfusion) from increases in nerve activity following ramp distension or capsaicin application. Peak firing to noxious mechanical distension and capsaicin application was determined respectively as the highest neuronal activity during ramp distension 5 and during the 10 min post-capsaicin application. Changes to neuronal activity were recorded with each 5 mmHg increase in pressure and used to visualize ramp profiles. Capsaicin response profiles were plotted from binned data at 30 s increments. The area under the curve (AUC) was calculated for the duration of each ramp distension (0–80 mmHg) and for the 10 min following initial capsaicin application from response profiles using GraphPad Prism 9 software.
DOI: 10.6084/m9.figshare.c.3606248_d3.v1
title: Additional file 1: of Genomic analysis of mouse VL30 retrotransposons

description: Genomic coordinates and structural features of full-length, truncated and solo-LTR VL30 sequences. The structural features of each individual full-length element after LTR-finder analysis are shown using the genome version mm10. The presence of PSF-binding motifs, with the percentage (%) similarity for each motif to consensus sequence is also shown for full-length and truncated elements. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3606257_d1.v1
title: Additional file 1: of Reliability of radiographic measurements for acute distal radius fractures

description: Data set- Repeated measurements by five observers for the eight anatomical parameters. File contains the raw values for the repeated measurements recorded by the five observers for the 30 radiographs. (XLS 49 kb)
DOI: 10.17863/cam.103290
title: Research data supporting "Inkjet Printed Photonic Cellulose Nanocrystal Patterns"

description: Supporting data for the article "Inkjet Printed Photonic Cellulose Nanocrystal Patterns", published in Advanced Materials (2023). The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article and supplementary information. Spreadsheets are provided as ‘.xlsx’ , or as '.mat' for angle resolved spectroscopy; images as ‘.jpg’, ‘.tif’ '.bmp' and ‘.png’. Nb. The individual ticks of the scale bar images corresponds to a spacing of 10 µm.
DOI: 10.6084/m9.figshare.c.3606248_d4.v1
title: Additional file 3: of Genomic analysis of mouse VL30 retrotransposons

description: ESTs associated with VL30 elements. The Microsoft Excel file contains detailed information about the ESTs starting or terminating within distinct VL30 sequences. (XLS 84Â kb)
DOI: 10.6084/m9.figshare.c.3606248_d6.v1
title: Additional file 2: of Genomic analysis of mouse VL30 retrotransposons

description: Common and unique transcription factor binding sites in LTRs of full-length, truncated and solo LTR VL30 sequences. The Microsoft Excel file contains three sheets each one presenting all transcription factor binding sites of full-length, truncated and solo LTR VL30 sequences, respectively. (XLS 554Â kb)
DOI: 10.6084/m9.figshare.c.3606278_d1.v1
title: Additional file 1: Table S1. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Sequences properties of genes A, B and C used to optimize the PCR conditions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3606278_d2.v1
title: Additional file 5: Table S5. of Development of a gene synthesis platform for the efficient large scale production of small genes encoding animal toxins

description: Sequence properties of 96 genes synthesised using the HTP gene synthesis platform. (XLSX 23 kb)
DOI: 10.15468/dl.sarvm9
title: Occurrence Download

description: A dataset containing 12788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclopterus lumpus Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12788 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037680-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.45292
title: Data supporting "A novel biomimetic design of a 3D vascular structure for self-healing in cementitious materials using Murray’s Law"

description: Nature has always been a source of inspiration in engineering applications and vascular networks, as in human skin and in a tree leave, are one attribute that has received attention in the design of resilient structures. A vascular system houses healing agents within its hollow channels or interconnected networks which are incorporated within a cement matrix. It is the only self-healing approach that has the capability to address different scales of damage in cementitious materials. The main aim of this work is to develop a novel vascular network inspired by nature for self-healing in cementitious systems. To achieve this, a biomimetic three-dimensional (3D) vascular network was designed and generated following Murray’s Law for circulatory blood volume transfer. The designed structures were constructed through 3D printing and assessed in a cement-based matrix. One-dimensional (1D) and two-dimensional (2D) models were also designed, printed and embedded into cement prisms to compare with the 3D vascular system. Load recovery was used to assess recovery in mechanical properties after the sample was cracked and pumped with sodium silicate for 28 days. Mechanical testing assessed the compatibility of the system with the surrounding matrix as well as the functionality of the network in delivering and releasing the healing agent at the location of damage. This initial proof of concept work confirmed the ability of all vascular systems to deliver the healing agent after a damage event, and the 3D vascular system demonstrated a significantly enhanced healing performance.
DOI: 10.6084/m9.figshare.c.3606362_d3.v1
title: Additional file 2: of Professional learning needs in using video calls identified through workshops

description: Further information on ethical considerations, (ii) recruitment email for health professionals (DOCX 26 kb), and (iii) recruitment for bereaved volunteers (PDF 184 kb). (ZIP 192 kb)
DOI: 10.6084/m9.figshare.c.3606383_d1.v1
title: MOESM2 of Bias in logistic regression due to imperfect diagnostic test results and practical correction approaches

description: Additional file 2: Simulated data used to illustrate Bayesian model 1.
DOI: 10.15468/dl.bqmtqz
title: Occurrence Download

description: A dataset containing 26022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enchelyopus cimbrius (Linnaeus, 1766)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26022 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037681-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606386_d3.v1
title: Additional file 2: Table S2. of Genome-wide association mapping of soybean chlorophyll traits based on canopy spectral reflectance and leaf extracts

description: List of significant SNP markers identified based on three chlorophyll determination methods namely extractable chlorophyll (eChl_T), and wavelet transformed spectral reflectance total chlorophyll (tChl_T) and spectral reflectance index total chlorophyll (iChl_T). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3606398_d1.v1
title: Additional file 1 of Identification of large disjoint motifs in biological networks

description: Appendix 1. This appendix shows the algebraic derivation of number of embeddings for each three of the four basic building blocks (see Section 1). In addition, the appendix lists further experimental analysis. Appendix file is attached as PDF file. (ZIP 151 kb)
DOI: 10.6084/m9.figshare.c.3606383_d3.v1
title: MOESM4 of Bias in logistic regression due to imperfect diagnostic test results and practical correction approaches

description: Additional file 4: Simulated data used to illustrate Bayesian model 3.
DOI: 10.6084/m9.figshare.c.3606386_d4.v1
title: Additional file 1: Table S1. of Genome-wide association mapping of soybean chlorophyll traits based on canopy spectral reflectance and leaf extracts

description: List of significant SNP markers for extractable chlorophyll a (eChl_A), chlorophyll b (eChl_B), total chlorophyll (eChl_T) and chlorophyll a/b ratio (eChl_R). (XLSX 17Â kb)
DOI: 10.17863/cam.50763
title: Research data supporting "Out-of-Plane Nanoscale Reorganization of Lipid Molecules and Nanoparticles Revealed by Plasmonic Spectroscopy"

description: The experimental data were taken in the NanoPhotonics Group at the Cavendish Laboratory (University of Cambridge). The dataset is for the journal article, "Out-of-Plane Nanoscale Reorganization of Lipid Molecules and Nanoparticles Revealed by Plasmonic Spectroscopy". For a description of the setup and data collection methods, see the "Methods" section of the manuscript. We acknowledge support from EPSRC grants EP/G060649/1, EP/L027151/1, EP/G037221/1, and EPSRC NanoDTC. R.C. acknowledges support from Trinity College, University of Cambridge. B.d.N acknowledges support from the Leverhulme Trust and Isaac Newton Trust in the form of an Early Career Fellowship.
DOI: 10.6084/m9.figshare.c.3606494_d9.v1
title: Additional file 4: Table S3. of Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

description: Intergenic SUTs identified in Xu et al. [11]. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3606536_d3.v1
title: Additional file 3: of Differentiation resistance through altered retinoblastoma protein function in acute lymphoblastic leukemia: in silico modeling of the deregulations in the G1/S restriction point pathway

description: SBML description of the model. (XML 573Â kb)
DOI: 10.17863/cam.96536
title: Multi-view video datasets for evaluation of NeRF and Neural View Synthesis methods

description: The dataset contains video frames and camera matrices intended for testing NeRF and Neural View Synthesis methods. The frames were captured with Sony A7RIII camera, either * in a controlled laboratory setup * on the streets * in the Natural History Museum of the University of Pisa The scenes are mostly static and the motion is due to camera movement. Further details in README.md.
DOI: 10.23668/psycharchives.2738
title: Database of Expert-Coded German PSE Stories
title: Dataset for: Measuring Implicit Motives With the Picture Story Exercise (PSE): Databases of Expert-Coded German Stories, Pictures, and Updated Picture Norms.

description: We present two openly accessible databases related to the assessment of implicit motives using Picture Story Exercises (PSEs): (a) A database of 183,415 German sentences, nested in 26,389 stories provided by 4,570 participants, which have been coded by experts using Winter’s coding system for the implicit affiliation/intimacy, achievement, and power motives, and (b) a database of 54 classic and new pictures which have been used as PSE stimuli. Updated picture norms are provided which can be used to select appropriate pictures for PSE applications. Based on an analysis of the relations between raw motive scores, word count, and sentence count, we give recommendations on how to control motive scores for story length, and validate the recommendation with a meta-analysis on gender differences in the implicit affiliation motive that replicates existing findings. We discuss to what extent the guiding principles of the story length correction can be generalized to other content coding systems for narrative material. Several potential applications of the databases are discussed, including (un)supervised machine learning of text content, psychometrics, and better reproducibility of PSE research.
description: Dataset for: Schönbrodt, F. D., Hagemeyer, B., Brandstätter, V., Czikmantori, T., Gröpel, P., Hennecke, M., Israel, L. S. F., Janson, K. T., Kemper, N., Köllner, M. G., Kopp, P. M., Mojzisch, A., Müller-Hotop, R., Prüfer, J., Quirin, M., Scheidemann, B., Schiestel, L., Schulz-Hardt, S., Sust, L. N. N., Zygar-Hoffmann, C., & Schultheiss, O. C. (2020). Measuring Implicit Motives with the Picture Story Exercise (PSE): Databases of Expert-Coded German Stories, Pictures, and Updated Picture Norms. Journal of Personality Assessment, 1–14. https://doi.org/10.1080/00223891.2020.1726936
DOI: 10.6084/m9.figshare.c.3606494_d11.v1
title: Additional file 2: Table S2. of Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

description: Positive genetic interactions of all tested lincRNAs. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3606494_d13.v1
title: Additional file 13: Table S6. of Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

description: Yeast strains used in this study. (XLSX 10 kb)
DOI: 10.23668/psycharchives.2739
title: Dataset for: Representational Momentum in vision and touch: Visual motion information biases tactile spatial localization

description: Dataset for the study "Representational Momentum in vision and touch: Visual motion information biases tactile spatial localization", to-be-published in Attention, Perception, & Psychophysics. For further information please refer to the aforementioned paper. The .sav data files can be analysed with the respective SPSS Syntax code available under "Code for: Representational Momentum in vision and touch: Visual motion information biases tactile spatial localization".
description: After an object disappears, the vanishing point is shifted in the direction of motion, a phenomenon known as representational momentum. The present study focused on the relationship between motion information and spatial location in a crossmodal setting. In two visuotactile experiments, we studied how motion information in one sensory modality affects the perceived final location of a motion signal (congruent vs. incongruent left-right motion direction) in another modality. The results revealed a unidirectional crossmodal influence of motion information on spatial localization performance. While visual motion information influenced the perceived final location of the tactile stimulus, tactile motion information had no influence on visual localization. These results therefore extend the existing literature on crossmodal influences on spatial location and are discussed in relation to current theories of multisensory perception.
description: Dataset for: Merz, S., Meyerhoff, H. S., Frings, C., & Spence, C. (2020). Representational momentum in vision and touch: Visual motion information biases tactile spatial localization. Attention, Perception, & Psychophysics, 82(5), 2618–2629. https://doi.org/10.3758/s13414-020-01989-1