cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4802590
title: Molecular trajectories and general MD files: Molecular insights on confined water in the nanochannels of self-assembled ionic liquid crystal

description: This repository includes the MD simulation dataset of self-assembled ionic liquid crystal reported in the article of <em>Sci. Adv.</em> <strong>7</strong>, eabf0669 (2021) [DOI: 10.1126/sciadv.abf0669]. The chemical structure of ionic liquid crystal is described in Fig. 1A. The cation involves an ionic moiety of <em>N</em>-methyl-<em>N</em>,<em>N</em>,<em>N</em>-triethylammonium group, and the terminals of the two alkyl chains are conjugated dienes. The anion is tetrafluoroborate BF<sub>4</sub>. The molecular and atomic-group charges of cation and anion are shown in the topology files named "ilc-oplsdft.itp" and "bf4-oplsdft.itp", respectively. The TIP3P and TIP4P/2005 models are employed for water molecules. After the careful equilibration process, the production MD was performed for 50 ns under the <em>NPT</em> condition at each composition. This dataset provides the configuration, topology, and general MD input files of Gromacs for all the states and models of bicontinuous and columnar structures obtained in the article. The 3D view of bicontinuous and columnar structures can be available in Fig. 2. The attached edr and log files are energy and general outputs of the MD simulation generated in our environment, and the xtc file is a trajectory output generated with a time interval of 20 ps.
description: This work is supported by JSPS KAKENHI Numbers JP19H05715, JP19H05718, JP20H02058, and JP20K15108 from the Japan Society for the Promotion of Science, and by the Elements Strategy Initiative for Catalysts and Batteries Number JPMXP0112101003. The simulations were performed by using the supercomputers of Hokkaido University (Grand Chariot), Research Center for Computational Science at Okazaki, Osaka University (OCTOPUS), and Kyushu University (ITO) partially through the HPCI System Research Project (Project IDs: hp200043, hp200055, hp200065, and hp200120).
DOI: 10.5281/zenodo.4802589
title: Molecular trajectories and general MD files: Molecular insights on confined water in the nanochannels of self-assembled ionic liquid crystal

description: This repository includes the MD simulation dataset of self-assembled ionic liquid crystal reported in the article of <em>Sci. Adv.</em> <strong>7</strong>, eabf0669 (2021) [DOI: 10.1126/sciadv.abf0669]. The chemical structure of ionic liquid crystal is described in Fig. 1A. The cation involves an ionic moiety of <em>N</em>-methyl-<em>N</em>,<em>N</em>,<em>N</em>-triethylammonium group, and the terminals of the two alkyl chains are conjugated dienes. The anion is tetrafluoroborate BF<sub>4</sub>. The molecular and atomic-group charges of cation and anion are shown in the topology files named "ilc-oplsdft.itp" and "bf4-oplsdft.itp", respectively. The TIP3P and TIP4P/2005 models are employed for water molecules. After the careful equilibration process, the production MD was performed for 50 ns under the <em>NPT</em> condition at each composition. This dataset provides the configuration, topology, and general MD input files of Gromacs for all the states and models of bicontinuous and columnar structures obtained in the article. The 3D view of bicontinuous and columnar structures can be available in Fig. 2. The attached edr and log files are energy and general outputs of the MD simulation generated in our environment, and the xtc file is a trajectory output generated with a time interval of 20 ps.
description: This work is supported by JSPS KAKENHI Numbers JP19H05715, JP19H05718, JP20H02058, and JP20K15108 from the Japan Society for the Promotion of Science, and by the Elements Strategy Initiative for Catalysts and Batteries Number JPMXP0112101003. The simulations were performed by using the supercomputers of Hokkaido University (Grand Chariot), Research Center for Computational Science at Okazaki, Osaka University (OCTOPUS), and Kyushu University (ITO) partially through the HPCI System Research Project (Project IDs: hp200043, hp200055, hp200065, and hp200120).
DOI: 10.6073/pasta/fdeac0049adcdb2be227bef128cdea52
title: High frequency measurements from Lake Bonney Meteorological Station (BOYM), McMurdo Dry Valleys, Antarctica (1993-2019, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This package contains 15-minute data from the Lake Bonney Meteorological Station (BOYM), located in Taylor Valley. BOYM was established in 1993, during the 93/94 field season.
DOI: 10.6084/m9.figshare.15059517
title: supplementary materials

description: supplementary materials for Long-term survival of <i>Synechococcus</i> and heterotrophic bacteria without external nutrient supply after changes in their relationship from antagonism to mutualism
DOI: 10.6084/m9.figshare.15059517.v3
title: supplementary materials

description: supplementary materials for Long-term survival of <i>Synechococcus</i> and heterotrophic bacteria without external nutrient supply after changes in their relationship from antagonism to mutualism
DOI: 10.6084/m9.figshare.15059517.v2
title: supplementary materials

description: supplementary materials for Long-term survival of <i>Synechococcus</i> and heterotrophic bacteria without external nutrient supply after changes in their relationship from antagonism to mutualism
DOI: 10.6073/pasta/efe4c3aeafcd8fb311a299df2f9d551a
title: High frequency measurements from Lake Brownworth Meteorological Station (BRHM), McMurdo Dry Valleys, Antarctica (1994-2019, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This data package contains 15-minute data from the Lake Brownworth Meteorological Station (BRHM), located in Wright Valley (Latitude: -77.43344, Longitude: 162.7036, Elevation: 279 meters above sea level). BRHM was established in 1994, during the 94/95 field season.
DOI: 10.5281/zenodo.5142855
title: Surface signatures of subduction

description: Data used for the preparation of the manuscript "Lagrangian surface signatures reveal upper-ocean subduction near oceanic density fronts".
DOI: 10.5281/zenodo.5142854
title: Surface signatures of subduction

description: Data used for the preparation of the manuscript "Lagrangian surface signatures reveal upper-ocean subduction near oceanic density fronts".
DOI: 10.5281/zenodo.5143808
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.6084/m9.figshare.15070884
title: Urban America Under Arrest: Too Many Sad Anniversaries

description: Open-data from LAPD's civic portal were scrubbed, moved into <i>GeoDa</i> software, and given iterations of <i>exploratory spatial data analysis.</i> <br>July 2021<br>This then is the author's <i>replication data</i> by filenames:UrbanAmUnderArrestLA-Arrests2020AugustPSAI.xlsx,<br>UrbanAmUnderArrestByrneLAReportingDistrictsDataFiles.zip which containLAPD_Reporting_Districts-shp and LAReportingDistricts.prj.gda
DOI: 10.6084/m9.figshare.15070884.v1
title: Urban America Under Arrest: Too Many Sad Anniversaries

description: Open-data from LAPD's civic portal were scrubbed, moved into <i>GeoDa</i> software, and given iterations of <i>exploratory spatial data analysis.</i> <br>July 2021<br>This then is the author's <i>replication data</i> by filenames:UrbanAmUnderArrestLA-Arrests2020AugustPSAI.xlsx,<br>UrbanAmUnderArrestByrneLAReportingDistrictsDataFiles.zip which containLAPD_Reporting_Districts-shp and LAReportingDistricts.prj.gda
DOI: 10.25345/c5m53z
title: MassIVE MSV000087901 - Endophytic fungi from Brazilian Pantanal
title: Extracts from Apoharknessia insueta obtained from vegetal species of Pantanal
DOI: 10.25345/c5gc11
title: MassIVE MSV000087902 - A gamma-tubulin complex-dependent pathway suppresses unscheduled ciliogenensis by promoting cilia disassembly
title: Deposited data contain LC-MS analysis results from Mzt2 (GCP8) tagged with FLAG-BirA on either the N- or C-terminus in Hela cells and affinity-purified tagged Mzt2 and associated proteins on anti-FLAG resin.
DOI: 10.6084/m9.figshare.15070845
title: Quantifying the dosimetric effects of neck contour changes and setup errors on spinal cord: establishing a rapid estimation method

description: Quantifying the dosimetric effects of neck contour changes and setup errors on spinal cord: establishing a rapid estimation method
DOI: 10.6084/m9.figshare.15070845.v1
title: Quantifying the dosimetric effects of neck contour changes and setup errors on spinal cord: establishing a rapid estimation method

description: Quantifying the dosimetric effects of neck contour changes and setup errors on spinal cord: establishing a rapid estimation method
DOI: 10.26078/ebgb-xt84
title:   Data from: Hydrated Sulfate Clusters SO4(2-)(H2O)n(n=1-40): Charge Distribution Through Solvation Shells and Stabilization

description: In the current work, we report our computational study of hydrated sulfate clusters SO4(2–)(H2O)n (n = 1–40) in order to understand the nature of stabilization of this important anion by water molecules. We showed that the most significant charge transfer from dianion SO4(2–) to H2O takes place at a number of H2O molecules n ≤ 7. The SO4(2–) directly donates its charge only to the first solvation shell and surprisingly, a small amount of electron density of 0.15|e| is enough to be transferred in order to stabilize the dianion.
DOI: 10.25345/c5bn7t
title: MassIVE MSV000087903 - Endophytic fungi from Brazilian Pantanal
title: EXtracts from Aspergillus sp. obtained from vegetal species of Pantanal
DOI: 10.14457/cu.the.1987.160
title: ปัจจัยที่มีอิทธิพลต่อการเลือกตั้งโรงงานอุตสาหกรรม ในเขตพระโขนง
DOI: 10.14457/cu.the.1987.161
title: สถานภาพของผู้สำเร็จการศึกษาจากโรงเรียนประถมศึกษาสังกัดเทศบาล ปีการศึกษา 2528 ที่ได้ศึกษาต่อและไม่ได้ศึกษาต่อ
DOI: 10.5281/zenodo.5115240
title: Dataset of MAVEN/NGIMS density and estimated ion number densities under the photochemical equilibrium

description: This dataset is used for figures in the paper "Seasonal and dust related variations of the dayside thermospheric and ionospheric compositions of Mars observed by MAVEN/NGIMS." The dataset contains neutral and ion number densities measured by MAVEN/NGIMS and estimated ion number densities under the photochemical equilibrium (PCE). The electron temperature measured by MAVEN/LPW and the photoionization rates estimated by the EUVAC solar flux model (Richards et al., 1994), which are used for estimation of ion number densities under the PCE, are included in the dataset. Detailed information can be found in the readme files in each directory.
DOI: 10.6084/m9.figshare.15071091
title: Table S1

description: Table S1
DOI: 10.6084/m9.figshare.15071091.v1
title: Table S1

description: Table S1
DOI: 10.6084/m9.figshare.15071097
title: Table S2

description: Table S2
DOI: 10.6084/m9.figshare.15071097.v1
title: Table S2

description: Table S2
DOI: 10.6084/m9.figshare.14759591
title: Additional file 1 of An update on the distribution, bionomics, and insecticide susceptibility of Anopheles stephensi in Ethiopia, 2018–2020

description: Additional file 1: Table S1. Larval collections made in 2020.
DOI: 10.6084/m9.figshare.14759591.v2
title: Additional file 1 of An update on the distribution, bionomics, and insecticide susceptibility of Anopheles stephensi in Ethiopia, 2018–2020

description: Additional file 1: Table S1. Larval collections made in 2020.
DOI: 10.6084/m9.figshare.14759591.v1
title: Additional file 1 of An update on the distribution, bionomics, and insecticide susceptibility of Anopheles stephensi in Ethiopia, 2018–2020

description: Additional file 1: Table S1. Larval collections made in 2020.
DOI: 10.6084/m9.figshare.15071204
title: Additional file 2 of Mental health and its association with coping strategies and intolerance of uncertainty during the COVID-19 pandemic among the general population in Saudi Arabia: cross-sectional study

description: Additional file 2.
DOI: 10.6084/m9.figshare.15071204.v1
title: Additional file 2 of Mental health and its association with coping strategies and intolerance of uncertainty during the COVID-19 pandemic among the general population in Saudi Arabia: cross-sectional study

description: Additional file 2.
DOI: 10.6084/m9.figshare.15071261
title: Additional file 1 of Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing

description: Additional file 1: Table S1. Sequencing data statistics.
DOI: 10.6084/m9.figshare.15071261.v1
title: Additional file 1 of Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing

description: Additional file 1: Table S1. Sequencing data statistics.
DOI: 10.6084/m9.figshare.15071279.v1
title: Additional file 7 of Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing

description: Additional file 7: Table S2. Contribution of mutational signatures.
DOI: 10.6084/m9.figshare.15071279
title: Additional file 7 of Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing

description: Additional file 7: Table S2. Contribution of mutational signatures.
DOI: 10.6084/m9.figshare.15071293
title: Additional file 1 of Consistent estimation of strain-rate fields from GNSS velocity data using basis function expansion with ABIC

description: Additional file 1. GNSS velocity data used in the analysis.
DOI: 10.6084/m9.figshare.15071293.v1
title: Additional file 1 of Consistent estimation of strain-rate fields from GNSS velocity data using basis function expansion with ABIC

description: Additional file 1. GNSS velocity data used in the analysis.
DOI: 10.6084/m9.figshare.15071302.v1
title: Additional file 2 of Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion

description: Additional file 2.
DOI: 10.6084/m9.figshare.15071302
title: Additional file 2 of Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion

description: Additional file 2.
DOI: 10.6084/m9.figshare.15071305.v1
title: Additional file 3 of Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion

description: Additional file 3.
DOI: 10.6084/m9.figshare.15071305
title: Additional file 3 of Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion

description: Additional file 3.
DOI: 10.6084/m9.figshare.15071326
title: Additional file 1 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 1: Supplementary Table S1. Sexually-based differentially expressed genes (SDEGs) in peripheral blood monocytes (n = 41, FDR &lt; 0.1).
DOI: 10.6084/m9.figshare.15071326.v1
title: Additional file 1 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 1: Supplementary Table S1. Sexually-based differentially expressed genes (SDEGs) in peripheral blood monocytes (n = 41, FDR &lt; 0.1).
DOI: 10.6084/m9.figshare.15071329
title: Additional file 2 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 2: Supplementary Table S2. Monocyte sex-biased genes (n = 565, p value &lt; 0.03) and the overlap with IFN signature genes that were previously identified in mouse macrophages (MF-ISGs).
DOI: 10.6084/m9.figshare.15071329.v1
title: Additional file 2 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 2: Supplementary Table S2. Monocyte sex-biased genes (n = 565, p value &lt; 0.03) and the overlap with IFN signature genes that were previously identified in mouse macrophages (MF-ISGs).
DOI: 10.6084/m9.figshare.15071332
title: Additional file 3 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 3: Supplementary Table S3. mRNA expression and secretion of inflammatory cytokine/chemokines in peripheral blood monocytes with and without LPS stimulation.
DOI: 10.6084/m9.figshare.15071332.v1
title: Additional file 3 of Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation

description: Additional file 3: Supplementary Table S3. mRNA expression and secretion of inflammatory cytokine/chemokines in peripheral blood monocytes with and without LPS stimulation.
DOI: 10.6084/m9.figshare.15071345
title: Additional file 1 of Chronic respiratory disease disparity between American Indian/Alaska Native and white populations, 2011–2018

description: Additional file 1. Determinants of chronic respiratory disease for 2011–2018. This table lists detailed covariates and odds ratios obtained from logistic regression analyses for years 2011 through 2018.
DOI: 10.6084/m9.figshare.15071345.v1
title: Additional file 1 of Chronic respiratory disease disparity between American Indian/Alaska Native and white populations, 2011–2018

description: Additional file 1. Determinants of chronic respiratory disease for 2011–2018. This table lists detailed covariates and odds ratios obtained from logistic regression analyses for years 2011 through 2018.
DOI: 10.6084/m9.figshare.15071347
title: Additional file 2 of Estimating colocalization probability from limited summary statistics

description: Additional file 2. Supplementary dataset 1: A table of all high probability colocalizations between GWAS catalog entries and GTEX eQTL.
DOI: 10.6084/m9.figshare.15071347.v1
title: Additional file 2 of Estimating colocalization probability from limited summary statistics

description: Additional file 2. Supplementary dataset 1: A table of all high probability colocalizations between GWAS catalog entries and GTEX eQTL.
DOI: 10.6084/m9.figshare.15071371.v1
title: Additional file 5 of The genetic diversity of “papillomavirome” in bovine teat papilloma lesions

description: Additional file 5. Conserved motifs of PV genomes, including nt positions of E2 and E1-binding site motifs, ATP binding site of the ATP-dependent helicase, leucine-zipper domain of E2 ORF, LxCxE motif of E7 ORFs, zinc-binding domains of E6 and E7 ORFs and polyadenylation sites.
DOI: 10.6084/m9.figshare.15071371
title: Additional file 5 of The genetic diversity of “papillomavirome” in bovine teat papilloma lesions

description: Additional file 5. Conserved motifs of PV genomes, including nt positions of E2 and E1-binding site motifs, ATP binding site of the ATP-dependent helicase, leucine-zipper domain of E2 ORF, LxCxE motif of E7 ORFs, zinc-binding domains of E6 and E7 ORFs and polyadenylation sites.
DOI: 10.6084/m9.figshare.15071377
title: Additional file 1 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 1: Table S1. Detailed Description of Tissue Samples Included in Each Tissue Type.
DOI: 10.6084/m9.figshare.15071377.v1
title: Additional file 1 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 1: Table S1. Detailed Description of Tissue Samples Included in Each Tissue Type.
DOI: 10.6084/m9.figshare.15071383.v1
title: Additional file 3 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 3: Table S2. MSE Values for each Cancer Type Based on Median Tissue Codon Usage.
DOI: 10.6084/m9.figshare.15071383
title: Additional file 3 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 3: Table S2. MSE Values for each Cancer Type Based on Median Tissue Codon Usage.
DOI: 10.6084/m9.figshare.15071389
title: Additional file 4 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 4: Table S3. Contains Table S3: Codon Usage Differences Between each Cancer and its Respective Normal Tissue.
DOI: 10.6084/m9.figshare.15071389.v1
title: Additional file 4 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 4: Table S3. Contains Table S3: Codon Usage Differences Between each Cancer and its Respective Normal Tissue.
DOI: 10.6084/m9.figshare.15071392
title: Additional file 5 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 5: Table S4. Statistically Significant Codon Usage Changes in 17 Cancer Types.
DOI: 10.6084/m9.figshare.15071392.v1
title: Additional file 5 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 5: Table S4. Statistically Significant Codon Usage Changes in 17 Cancer Types.
DOI: 10.6084/m9.figshare.15071395
title: Additional file 6 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 6: Table S5. Two-Sided Wilcoxon Signed-Rank Test P Values for All Cancers.
DOI: 10.6084/m9.figshare.15071395.v1
title: Additional file 6 of Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

description: Additional file 6: Table S5. Two-Sided Wilcoxon Signed-Rank Test P Values for All Cancers.
DOI: 10.6084/m9.figshare.15071414
title: Additional file 1 of Research on the correlation between activating transcription factor 3 expression in the human coronary artery and atherosclerotic plaque stability

description: Additional file 1. Basic case information.
DOI: 10.6084/m9.figshare.15071414.v1
title: Additional file 1 of Research on the correlation between activating transcription factor 3 expression in the human coronary artery and atherosclerotic plaque stability

description: Additional file 1. Basic case information.
DOI: 10.6084/m9.figshare.15071429
title: Additional file 1 of Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin

description: Additional file 1. Table S1: Composition of two staphylococcal mock communities.
DOI: 10.6084/m9.figshare.15071429.v1
title: Additional file 1 of Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin

description: Additional file 1. Table S1: Composition of two staphylococcal mock communities.
DOI: 10.6084/m9.figshare.15071432
title: Additional file 2 of Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin

description: Additional file 2. Table S2: Cultivation results of skin swabs from 13 volunteers.
DOI: 10.6084/m9.figshare.15071432.v1
title: Additional file 2 of Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin

description: Additional file 2. Table S2: Cultivation results of skin swabs from 13 volunteers.
DOI: 10.6084/m9.figshare.15071435
title: Additional file 3 of Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin

description: Additional file 3. Table S3: Genome statistics of sequenced staphylococcal genomes.