cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6338639.v1
title: Additional file 2: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S1. PatternMarker genes for the expression and methylation CoGAPS patterns and list of genes with significant anti-correlation between gene expression and methylation. (XLSX 117Â kb)
DOI: 10.6084/m9.figshare.6338624
title: Additional file 9: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MYDV-RMV contigs used for phylogenetic analysis. (FASTA 27Â kb)
DOI: 10.6084/m9.figshare.6338624.v1
title: Additional file 9: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MYDV-RMV contigs used for phylogenetic analysis. (FASTA 27Â kb)
DOI: 10.6084/m9.figshare.6338609
title: Additional file 8: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MSV contigs used for phylogenetic analysis. (FASTA 20Â kb)
DOI: 10.6084/m9.figshare.6338609.v1
title: Additional file 8: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MSV contigs used for phylogenetic analysis. (FASTA 20Â kb)
DOI: 10.6084/m9.figshare.12893411
title: R0189_20171006a_videos

description: Rat 0189, skilled reaching data collected on 10/6/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12893411.v1
title: R0189_20171006a_videos

description: Rat 0189, skilled reaching data collected on 10/6/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6338579
title: Additional file 6: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: SCMV contigs used for phylogenetic analysis. (FASTA 193Â kb)
DOI: 10.6084/m9.figshare.6338579.v1
title: Additional file 6: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: SCMV contigs used for phylogenetic analysis. (FASTA 193Â kb)
DOI: 10.6084/m9.figshare.6338561
title: Additional file 5: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MCMV contigs used for phylogenetic analysis. (FASTA 132Â kb)
DOI: 10.6084/m9.figshare.6338561.v1
title: Additional file 5: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: MCMV contigs used for phylogenetic analysis. (FASTA 132Â kb)
DOI: 10.6084/m9.figshare.6338543
title: Additional file 4: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: Table S2. Virus identification by BlastN against the Plant Virus Genome Database and contig alignment. (XLSX 1123Â kb)
DOI: 10.6084/m9.figshare.6338543.v1
title: Additional file 4: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: Table S2. Virus identification by BlastN against the Plant Virus Genome Database and contig alignment. (XLSX 1123Â kb)
DOI: 10.6084/m9.figshare.12855572.v1
title: Bibliometric Analysis of Road Traffic Injuries Research in the Gulf Cooperation Council Region

description: Data contains all 312 publication records in CSV file, All data file and excel charts in Excel Workbook, Figures in TIFF 300dpi from Biblioshiny and VOSViewer software.
DOI: 10.6084/m9.figshare.6338504
title: Additional file 1: of Landraces of snake melon, an ancient Middle Eastern crop, reveal extensive morphological and DNA diversity for potential genetic improvement

description: Omari et al. Table S1. Data on landraces used in this study and their respective collection sites. Table provides, for each population (collection site), the full set of geographic and climatic variables, morphological scores, and genetic diversity parameters that were calculated from the molecular data. (XLS 103 kb)
DOI: 10.6084/m9.figshare.6338504.v1
title: Additional file 1: of Landraces of snake melon, an ancient Middle Eastern crop, reveal extensive morphological and DNA diversity for potential genetic improvement

description: Omari et al. Table S1. Data on landraces used in this study and their respective collection sites. Table provides, for each population (collection site), the full set of geographic and climatic variables, morphological scores, and genetic diversity parameters that were calculated from the molecular data. (XLS 103 kb)
DOI: 10.6084/m9.figshare.6338495
title: Additional file 2: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: Table S1. Description of samples used for identification of viruses associated to maize lethal necrosis in Kenya by a metagenomic analysis. (XLSX 1273Â kb)
DOI: 10.6084/m9.figshare.6338495.v1
title: Additional file 2: of Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

description: Table S1. Description of samples used for identification of viruses associated to maize lethal necrosis in Kenya by a metagenomic analysis. (XLSX 1273Â kb)
DOI: 10.6084/m9.figshare.6338450
title: MOESM5 of Understanding metabolic changes in aging bone marrow

description: Additional file 5: Table S5. IPA pathway analysis of old-mice marrow.
DOI: 10.6084/m9.figshare.6338450.v1
title: MOESM5 of Understanding metabolic changes in aging bone marrow

description: Additional file 5: Table S5. IPA pathway analysis of old-mice marrow.
DOI: 10.6084/m9.figshare.6338438
title: Additional file 9: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S8. Expression analyses of P-type II Ca 2+ ATPase genes of T. aestivum in various tissue developmental stages and stress conditions. The high expressing genes in tissue developmental stages are highlighted in green boxes. In stress conditions, two fold or more upregulated and downregulated genes are shown in green and yellow colour cells, respectively. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6338438.v1
title: Additional file 9: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S8. Expression analyses of P-type II Ca 2+ ATPase genes of T. aestivum in various tissue developmental stages and stress conditions. The high expressing genes in tissue developmental stages are highlighted in green boxes. In stress conditions, two fold or more upregulated and downregulated genes are shown in green and yellow colour cells, respectively. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6338432
title: MOESM4 of Understanding metabolic changes in aging bone marrow

description: Additional file 4: Table S4. RNA-seq gene expression in the marrow of chemo-treated mice.
DOI: 10.6084/m9.figshare.6338432.v1
title: MOESM4 of Understanding metabolic changes in aging bone marrow

description: Additional file 4: Table S4. RNA-seq gene expression in the marrow of chemo-treated mice.
DOI: 10.6084/m9.figshare.6338423
title: MOESM3 of Understanding metabolic changes in aging bone marrow

description: Additional file 3: Table S3. RNA-seq gene expression in the marrow of old mice.
DOI: 10.6084/m9.figshare.6338423.v1
title: MOESM3 of Understanding metabolic changes in aging bone marrow

description: Additional file 3: Table S3. RNA-seq gene expression in the marrow of old mice.
DOI: 10.6084/m9.figshare.6338420
title: Additional file 8: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S7. Prediction of cis regulatory elements in P-type II Ca 2+ ATPase genes using PLACE server. (XLSX 233Â kb)
DOI: 10.6084/m9.figshare.6338420.v1
title: Additional file 8: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S7. Prediction of cis regulatory elements in P-type II Ca 2+ ATPase genes using PLACE server. (XLSX 233Â kb)
DOI: 10.6084/m9.figshare.6338408
title: Additional file 7: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S6. Prediction of sub-cellular localization using various tools. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6338408.v1
title: Additional file 7: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S6. Prediction of sub-cellular localization using various tools. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6338402
title: MOESM2 of Understanding metabolic changes in aging bone marrow

description: Additional file 2: Table S2. One-way ANOVA of metabolite expression, followed by post hoc Tukey tests across treatment groups.
DOI: 10.6084/m9.figshare.6338402.v1
title: MOESM2 of Understanding metabolic changes in aging bone marrow

description: Additional file 2: Table S2. One-way ANOVA of metabolite expression, followed by post hoc Tukey tests across treatment groups.
DOI: 10.6084/m9.figshare.6338393
title: Additional file 6: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S5. Domain architecture analysis of TaACA and TaECA class of proteins. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6338393.v1
title: Additional file 6: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S5. Domain architecture analysis of TaACA and TaECA class of proteins. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6338390
title: MOESM1 of Understanding metabolic changes in aging bone marrow

description: Additional file 1: Table S1. Mouse metabolome: raw ion-intensities for each biochemical were detected on a per sample basis..
DOI: 10.6084/m9.figshare.6338390.v1
title: MOESM1 of Understanding metabolic changes in aging bone marrow

description: Additional file 1: Table S1. Mouse metabolome: raw ion-intensities for each biochemical were detected on a per sample basis..
DOI: 10.6084/m9.figshare.6338378
title: Additional file 2: of Trends in the incidence and associated factors of late-onset sepsis associated with improved survival in extremely preterm infants born at 23–26 weeks’ gestation: a retrospective study

description: The datasets supporting the conclusion of this study. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.6338378.v1
title: Additional file 2: of Trends in the incidence and associated factors of late-onset sepsis associated with improved survival in extremely preterm infants born at 23–26 weeks’ gestation: a retrospective study

description: The datasets supporting the conclusion of this study. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.6338360
title: Additional file 4: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S4. Prediction of number of transmembrane helices in TaACA and TaECA proteins employing different tools. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6338360.v1
title: Additional file 4: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S4. Prediction of number of transmembrane helices in TaACA and TaECA proteins employing different tools. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6338339
title: Additional file 3: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S3. Gene and protein characterization of T. aestivum P-type II Ca2+ATPases. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6338339.v1
title: Additional file 3: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S3. Gene and protein characterization of T. aestivum P-type II Ca2+ATPases. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6338324
title: Additional file 2: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S2. Clustering of TaACA and TaECA genes from various sub-genomes into homoeologous groups based on high similarity. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6338324.v1
title: Additional file 2: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S2. Clustering of TaACA and TaECA genes from various sub-genomes into homoeologous groups based on high similarity. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6338306
title: Additional file 4: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S4. Full results of comparative genomics prediction of TFBSs in CA11 promoter. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.6338306.v1
title: Additional file 4: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S4. Full results of comparative genomics prediction of TFBSs in CA11 promoter. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.6338300
title: Additional file 1: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S1. List of protein sequences identified as putative P- type II Ca2+ATPase proteins using various databases. The highlighted sequences were full length and showed comparable gene and protein architecture to the reported sequences, and therefore were used during further characterization. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6338300.v1
title: Additional file 1: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S1. List of protein sequences identified as putative P- type II Ca2+ATPase proteins using various databases. The highlighted sequences were full length and showed comparable gene and protein architecture to the reported sequences, and therefore were used during further characterization. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6338288
title: Additional file 3: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S3. Full results of comparative genomics prediction of TFBSs in CA8 promoter. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.6338288.v1
title: Additional file 3: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S3. Full results of comparative genomics prediction of TFBSs in CA8 promoter. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.6338285
title: Additional file 3: of On the possibility of death of new genes – evidence from the deletion of de novo microRNAs

description: Raw data of male fitness components for mir-977 KO. Detail components: male fertility (related to Fig. 3a and Additional file 1: Figure S1b), stimulating ovulation (related to Fig. 3a), sperm quality (related to Fig. 3a), meiotic drive (related to Fig. 3b). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6338285.v1
title: Additional file 3: of On the possibility of death of new genes – evidence from the deletion of de novo microRNAs

description: Raw data of male fitness components for mir-977 KO. Detail components: male fertility (related to Fig. 3a and Additional file 1: Figure S1b), stimulating ovulation (related to Fig. 3a), sperm quality (related to Fig. 3a), meiotic drive (related to Fig. 3b). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6338258
title: Additional file 2: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S2. Expression of CA11 CAGE peak, as derived from the FANTOM project. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.6338258.v1
title: Additional file 2: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S2. Expression of CA11 CAGE peak, as derived from the FANTOM project. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.6338255
title: Additional file 10: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S9. Annotation and GO mapping of genes co-expressed with P-type II Ca2 + ATPase genes of T. aestivum during tissue development, heat, drought, and salt stresses. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.6338255.v1
title: Additional file 10: of Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L

description: Table S9. Annotation and GO mapping of genes co-expressed with P-type II Ca2 + ATPase genes of T. aestivum during tissue development, heat, drought, and salt stresses. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.6338246
title: Additional file 1: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S1. Expression of CA8 CAGE peak, as derived from the FANTOM project. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6338246.v1
title: Additional file 1: of Carbonic anhydrase related protein expression in astrocytomas and oligodendroglial tumors

description: Table S1. Expression of CA8 CAGE peak, as derived from the FANTOM project. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6338231
title: MOESM3 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 3: Table S3 . Retrieved articles from the PubMed database with 'Aspergillus niger' in the title, abstract, or keywords over the last 5 years used to map the active research community.
DOI: 10.6084/m9.figshare.6338228
title: Additional file 1: of Similar rates of morphological evolution in domesticated and wild pigs and dogs

description: Raw data on skull measurements. Each sheet contains collection identity numbers, sex and species (and breed/variety) affiliation, regional (if not a domestic breed) and temporal information, as well as all measurements of used specimen. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6338231.v1
title: MOESM3 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 3: Table S3 . Retrieved articles from the PubMed database with 'Aspergillus niger' in the title, abstract, or keywords over the last 5 years used to map the active research community.
DOI: 10.6084/m9.figshare.6338228.v1
title: Additional file 1: of Similar rates of morphological evolution in domesticated and wild pigs and dogs

description: Raw data on skull measurements. Each sheet contains collection identity numbers, sex and species (and breed/variety) affiliation, regional (if not a domestic breed) and temporal information, as well as all measurements of used specimen. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6338213
title: MOESM2 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 2: Table S2 . Number of studies for various filamentous fungi over the last 40 years.
DOI: 10.6084/m9.figshare.6338213.v1
title: MOESM2 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 2: Table S2 . Number of studies for various filamentous fungi over the last 40 years.
DOI: 10.6084/m9.figshare.6338195
title: MOESM1 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 1: Table S1 . Complete list of all studies retrieved from the PubMed database with 'Aspergillus niger' in the title from 1917â 2017.
DOI: 10.6084/m9.figshare.6338195.v1
title: MOESM1 of How a fungus shapes biotechnology: 100Â years of Aspergillus niger research

description: Additional file 1: Table S1 . Complete list of all studies retrieved from the PubMed database with 'Aspergillus niger' in the title from 1917â 2017.
DOI: 10.6084/m9.figshare.6337574
title: Data for A Moisture Function of Soil Heterotrophic Respiration

description: Data for Yan et al. Nature Communications (2018)
DOI: 10.6084/m9.figshare.6337004
title: Common_ragweed_allelopathy_allelochemical_data

description: Common_ragweed_allelopathy_allelochemical_data
DOI: 10.6084/m9.figshare.6337004.v1
title: Common_ragweed_allelopathy_allelochemical_data

description: Common_ragweed_allelopathy_allelochemical_data
DOI: 10.6084/m9.figshare.6336911
title: Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (Solanum tuberosum)

description: Supplementary file S1 includes a pipeline in R to conduct SNP variance analysis, using different genetic models for autotetraploid potatoes. File S2 and S3 include genotypic and phenotypic information for late blight and common scab, respectively. File S4 includes supplementary tables cited in the paper. Finally, the supplementary figures S1 and S2 include linkage disequilibrium plots for the top ten SNP according to their contribution to the late blight and common scab variance, respectively.
DOI: 10.6084/m9.figshare.6336911.v1
title: Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (Solanum tuberosum)

description: Supplementary file S1 includes a pipeline in R to conduct SNP variance analysis, using different genetic models for autotetraploid potatoes. File S2 and S3 include genotypic and phenotypic information for late blight and common scab, respectively. File S4 includes supplementary tables cited in the paper. Finally, the supplementary figures S1 and S2 include linkage disequilibrium plots for the top ten SNP according to their contribution to the late blight and common scab variance, respectively.
DOI: 10.6084/m9.figshare.6334247
title: Dataset for: Retained differentiation capacity of human skeletal muscle satellite cells from spinal cord-injured individuals

description: Despite the well-known role of satellite cells in skeletal muscle plasticity, the effect of spinal cord injury on their function in humans remains unknown. We determined whether spinal cord injury affects the intrinsic ability of satellite cells to differentiate and produce metabolically healthy myotubes. We obtained <i>vastus lateralis</i> biopsies from eight spinal cord-injured and six able-bodied individuals. Satellite cells were isolated, grown and differentiated <i>in vitro</i>. Gene expression was measured by quantitative PCR. Abundance of differentiation markers and regulatory proteins was determined by Western blotting. Protein synthesis and fatty acid oxidation were measured by radioactive tracer-based assays. Activated satellite cells (myoblasts) and differentiated myotubes derived from skeletal muscle of able-bodied and spinal cord-injured individuals expressed similar (p&gt;0.05) mRNA levels of myogenic regulatory factors. Myod1 expression was higher in myoblasts from spinal cord-injured individuals. Desmin and myogenin protein content was increased upon differentiation in both groups, while myotubes from spinal cord-injured individuals contained more type I and II myosin heavy chain. Phosphorylated and total protein levels of Akt-mTOR and FoxO signalling axes and protein synthesis rate in myotubes were similar (p&gt;0.05) between groups. Additionally, fatty acid oxidation of myotubes from spinal cord-injured individuals was unchanged (p&gt;0.05) compared to able-bodied controls. Our results indicate that the intrinsic differentiation capacity of satellite cells and metabolic characteristics of myotubes are preserved following spinal cord injury. This may inform potential interventions targeting satellite cell activation to alleviate skeletal muscle atrophy.