cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.28080
title: Activated Charcoal and Aged Palm Sap on Laying Performance
title: Activated Charcoal and Aged Palm Sap on Laying Performance

description: The data on the Effect of activated Charcoal and Aged Palm Sap-Supplemented Diets in Laying hens comprises of data on 1.     Laying performance and egg quality traits such as average initial and final weights, weight change, average feed intake, feed conversion ratio, egg mass, egg number, average egg weight and henday production percentage per week. Others include egg external and internal quality paramters collected bi-weekly such as egg length and width, shell weight and thickness, albumen and yolk indices, Haugh unit etc.2.     Haematological and Serum Biochemical parameters including liver enzyme and serum minerals collected from 12 hens per treatment3.     Reproductive hormones and morphometry of laying hens such as luteinizing hormone, follicle stimulating hormone, estrogen and progesterone, average ovarian and follicular weights of hens and their relative weights, stroma weight, average lengths and weights of oviduct.Data was collected from 240 healthy Isa Brown laying hens of 48 weeks old, with similar average body weight and laying performance. The study design was completely randomized, comprising of five (5) dietary treatments. Each treatment group had six (6) replicates, with eight (8) hens per replicate (n=48 hens per treatment).Column headers represent the individual parametres determined while the row headers represent the individual treatment and replicate data.Data is stored in excel format
description: The data on the Effect of activated Charcoal and Aged Palm Sap-Supplemented Diets in Laying hens comprises of data on 1.     Laying performance and egg quality traits such as average initial and final weights, weight change, average feed intake, feed conversion ratio, egg mass, egg number, average egg weight and henday production percentage per week. Others include egg external and internal quality paramters collected bi-weekly such as egg length and width, shell weight and thickness, albumen and yolk indices, Haugh unit etc.2.     Haematological and Serum Biochemical parameters including liver enzyme and serum minerals collected from 12 hens per treatment3.     Reproductive hormones and morphometry of laying hens such as luteinizing hormone, follicle stimulating hormone, estrogen and progesterone, average ovarian and follicular weights of hens and their relative weights, stroma weight, average lengths and weights of oviduct.Data was collected from 240 healthy Isa Brown laying hens of 48 weeks old, with similar average body weight and laying performance. The study design was completely randomized, comprising of five (5) dietary treatments. Each treatment group had six (6) replicates, with eight (8) hens per replicate (n=48 hens per treatment).Column headers represent the individual parametres determined while the row headers represent the individual treatment and replicate data.Data is stored in excel format
DOI: 10.21979/n9/pbud6a
title: Spring-Village Picture Cards for alveolar/retroflex minimal pairs in Mandarin Chinese

description: Different varieties of Chinese spoken around the world are known to differ in the way they pronounce certain words. The Spring Village Picture Cards is a set of stimuli designed to depict words in Mandarin Chinese that differ only in a single phoneme (minimal pairs). 6 minimal pairs were constructed differing only in the place of articulation of the onset consonant (e.g., 村/cūn [tsʰuən1] 'village' and 春/chūn [ʈʂʰuən1] 'spring (season)'). All words feature Tone 1 (steady) and Tone 4 (falling).
DOI: 10.15468/dl.gyc9x8
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine tuberosa"
 ]
}

 The dataset includes 182 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004955-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkbr9w
title: Occurrence Download

description: A dataset containing 5556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China, Hong Kong, Macao)",
 "TaxonKey is Celosia argentea"
 ]
}

 The dataset includes 5556 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004953-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vqfju
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcosmus squamiger",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004956-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xqznb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia humifusa",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004958-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwevs8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia humifusa",
 "Country is Georgia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004957-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/qx0-16g-grf
title: Rumex alpinus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.57967/hf/6016
title: Group-Theory-Collection
DOI: 10.6084/m9.figshare.29596349
title: Supplementary Material for: Real-world insights: Balancing diagnostic benefits and oncological risks of ureteroscopic biopsy before radical nephroureterectomy for upper tract urothelial carcinoma

description: Purpose:

The role of diagnostic ureteroscopy (URS) prior to radical nephroureterectomy (RNU) remains controversial due to concerns about an increased risk of intravesical recurrence. However, existing studies frequently exhibit two major confounders: lack of reporting on the use of mitomycin C instillation after RNU and not excluding patients with a history of bladder cancer. 

Methods:

We retrospectively evaluated the proportion of RNU patients for whom the URS biopsy result before RNU was decisive for therapy. The impact of URS biopsy on intravesical recurrence (IVR), overall survival (OS), and cancer-specific survival (CSS) was evaluated using univariate and multivariable Cox regression analyses and Kaplan-Meier curves. 

Results:

Between January 2005 and November 2022, 229 patients with upper tract urothelial carcinoma (UTUC) underwent RNU with single post-operative mitomycin C instillation at our department. After excluding those with a history of bladder cancer, 148 RNU patients were included in the final analysis (prior URS biopsy: 125 (84%), no URS biopsy: 23 (16%)). Before RNU, both urine cytology and CT were inconclusive in 37% of patients. URS biopsy confirmed UTUC in 73% of these cases. Univariate and multivariable Cox regression analyses revealed no significant differences in IVR, OS, or CSS between patients who underwent URS biopsy before RNU and those who did not. 

Conclusion:

URS biopsy was essential for clinical decision-making in one-third of patients who underwent RNU. There were no oncologic disadvantages for patients who underwent URS biopsy prior to RNU, demonstrating its utility in clinical practice without compromising oncologic outcomes.
DOI: 10.6084/m9.figshare.29596349.v1
title: Supplementary Material for: Real-world insights: Balancing diagnostic benefits and oncological risks of ureteroscopic biopsy before radical nephroureterectomy for upper tract urothelial carcinoma

description: Purpose:

The role of diagnostic ureteroscopy (URS) prior to radical nephroureterectomy (RNU) remains controversial due to concerns about an increased risk of intravesical recurrence. However, existing studies frequently exhibit two major confounders: lack of reporting on the use of mitomycin C instillation after RNU and not excluding patients with a history of bladder cancer. 

Methods:

We retrospectively evaluated the proportion of RNU patients for whom the URS biopsy result before RNU was decisive for therapy. The impact of URS biopsy on intravesical recurrence (IVR), overall survival (OS), and cancer-specific survival (CSS) was evaluated using univariate and multivariable Cox regression analyses and Kaplan-Meier curves. 

Results:

Between January 2005 and November 2022, 229 patients with upper tract urothelial carcinoma (UTUC) underwent RNU with single post-operative mitomycin C instillation at our department. After excluding those with a history of bladder cancer, 148 RNU patients were included in the final analysis (prior URS biopsy: 125 (84%), no URS biopsy: 23 (16%)). Before RNU, both urine cytology and CT were inconclusive in 37% of patients. URS biopsy confirmed UTUC in 73% of these cases. Univariate and multivariable Cox regression analyses revealed no significant differences in IVR, OS, or CSS between patients who underwent URS biopsy before RNU and those who did not. 

Conclusion:

URS biopsy was essential for clinical decision-making in one-third of patients who underwent RNU. There were no oncologic disadvantages for patients who underwent URS biopsy prior to RNU, demonstrating its utility in clinical practice without compromising oncologic outcomes.
DOI: 10.15468/dl.reefku
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea wendelboi"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004959-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32bhc6
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Planorbella trivolvis",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004962-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdeneg
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bacopa monniera"
 ]
}

 The dataset includes 40 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004963-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhtg5j
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia humifusa",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 292 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004964-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkg6fw
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia humifusa",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004965-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvyph8
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Avena strigosa",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 169 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004968-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.by7phe
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "TaxonKey is Artemisia caruifolia"
 ]
}

 The dataset includes 167 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004967-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftucpk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum afghanicum"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004966-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29p6vq
title: Occurrence Download

description: A dataset containing 599006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Rallus limicola)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 599006 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004935-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gppeaj
title: Occurrence Download

description: A dataset containing 1744 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Endotropis lanceolata"
 ]
}

 The dataset includes 1744 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004970-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a65268
title: Occurrence Download

description: A dataset containing 76350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76350 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004944-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fxbm8
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chilocardamum longistylum"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004971-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm9mbt
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sardinella fimbriata"
 ]
}

 The dataset includes 176 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004972-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc23zw
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus montevidensis",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004974-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x89ddz
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus montevidensis",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 96 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004975-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8q3ev7
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia humifusa",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 98 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004973-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1tq-ktg-pfe
title: Rumex arifolius All.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.gexgwt
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba splendens"
 ]
}

 The dataset includes 64 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004976-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2195375163
title: Advanced Photon Source, Sector 21 - The Life Sciences Collaborative Access Team (LS-CAT) - CAT Member Macromolecular Crystallography

description: The Life Sciences Collaborative Access Team (LS-CAT) provides Macromolecular Crystallography support to our CAT members from seven Universities in the USA, including Northwestern University, University of Michigan, Wayne State University, Michigan State University, University of Wisconsin, Vanderbilt University, and University of Illinois at Chicago, and also to General Users. With a one-year dark period approaching for the upgrade of the Advanced Photon Source (APS-U), we sought beam time for our CAT Member laboratories at ESRF by way of a Block Allocation Group Proposal, in order to keep supporting their research and their ability to secure future funding. LS-CAT has organized our CAT Members (~80 PIs and their laboratory personnel) into this BAG Proposal, and in order to streamline the process for our CAT Members, and for the Staff of Lightsources to which we are applying for access to beam time, only LS-CAT Staff Crystallographers will be collecting and managing the data.
DOI: 10.15151/esrf-es-2113997739
title: Munich Crystallography BAG

description: The diverse groups of the Munich Crystallography BAG study a far range of subjects, reaching from structural aspects of fundamental cellular processes - such
as RNA processing, protein folding and degradation, DNA repair, chromatin remodelling, enzymes - to the design of foldamers. The research groups are located
at the LMU and TUM universities in Munich, at the Max-Planck-Institute of Biochemistry, Martinsried, and the Helmholtz Center, Neuherberg. Out-groups are
located at the universities in Darmstadt and Ulm, Germany. The research groups use X-ray crystallography, single-particle cryo-EM, SAXS, NMR and HDX and
XL-MS mass-spectrometry for structural studies.
DOI: 10.15151/esrf-es-2187097915
title: Structural insights on the regulation of histone ubiquitination

description: Histone ubiquitination plays an essential role in the regulation of transcription initiation and elongation, and facilitates the DNA damage response and repair by promoting the recruitment of repair proteins. The relevance of this process is such that depleted global histone ubiquitination levels have been reported in several cancer types. Despite the intensive research on the histone ubiquitination machinery, its structure and the molecular mechanisms driving its specificity and regulation are still unclear. More importantly, the connections between an impaired machinery and the onset of these cancer types remain obscured. Thus, this project aims to structurally characterize the Histone ubiquitination machinery in complex with its nucleosome substrate and its regulatory proteins using cryo electron microscopy. Understanding the target recognition, modification and regulation at the molecular level will be instrumental to rationalize future therapeutic applications.
DOI: 10.15151/esrf-es-2187094923
title: Time-resolved structural biology as a tool to unravel and target enzyme catalysis and regulation: the actinobacterial KGD test-case

description: Time-resolved studies represent one of the new frontiers in the field of structural biology, where the achievable time resolution remains, in most systems, a limiting factor. We propose here to develop, in collaboration with the Crystallography Platform of the Institut Pasteur and the FIP2 beamline, time-resolved X-ray
crystallography studies on a non-photoactivable sample, specifically actinobacterial 2-oxoglutarate decarboxylase. Previous work by M. Bellinzoni’s group has
shown the features of this essential, thiamine diphosphate dependent metabolic enzyme and shown the feasibility of time-resolved studies inside crystals, making this enzyme an ideal test case. Room-temperature, humidity-controlled data collections will be initially performed, followed by time-resolved analysis following substrate injection and diffusion to isolate short-lived states in catalysis. We expect these results to define conditions for further time-resolved, serial crystallography studies.
DOI: 10.15151/esrf-es-2170239553
title: Blue Phase Liquid Crystal Nanocomposites: Variation of Nanoparticle Size, Shape and Ligand Shell

description: Chiral Blue Phase liquid crystals (BPLCs) are 3D soft photonic crystals with unique cubic crystal structures. Due to their ultrafast response to electronic fields and optical properties, many efforts are underway to develop opto-electronic BPLC devices but are hindered by narrow BP temperature ranges, widened by adding polymers and/or nanoparticle (NPs). We previously showed that gold NPs in BPLCs reversibly form giant 3D cubic crystals but apart from our study, the NP spatial distributions, important for applications and understanding BPLC fundamental properties, have not been characterized. USAXS will be applied to study the effect of NP size, shape and ligand shell on the NP spatial distributions and BPLC stability.