cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7548947
title: Phenotypes controlled by the Brucella abortus two component system BvrR/BvrS differ in their dependence on the phosphorylation of the response regulator BvrR

description: <em>Brucella abortus</em> is a zoonotic pathogen whose ability to survive intracellularly at the endoplasmic reticulum is essential for its virulence. The two-component system BvrR/BvrS is essential for intracellular survival due to the transcriptional control of the type IV secretion system VirB and its transcriptional regulator VjbR. In addition, this system is a master regulator of several traits including membrane conformation by controlling proteins such as Omp25. To understand the regulatory strategies used by BvrR we generated dominant positive and negative versions of this response regulator which, in addition to the wild type version, were introduced in a BvrR- background. We then characterized BvrRS-controlled phenotypes and the expression of proteins controlled by the system. We found two regulatory patterns exerted by BvrR. The first pattern was represented by resistance to polymyxin and expression of Omp25 (membrane conformation) which were restored to normal levels by the dominant positive and the wild type version, but not the dominant negative version, of BvrR. The second pattern was represented by intracellular survival and expression of VjbR and VirB (virulence) which were, again, fully complemented by wild type and the dominant versions of BvrR but, significantly restored by complementation with the dominant negative version of the response regulator. These results suggested a differential binding of unphosphorylated BvrR with promoters of the genes it controls. We confirmed this hypothesis by showing that the dominant negative version of BvrR was not able to interact with the promoter of <em>omp25</em> but was able to interact with the promoter of <em>vjbR</em>. Furthermore, a global transcriptional analysis indicated that some genes respond to the presence of the dominant negative version of BvrR. Thus, BvrR possesses diverse strategies to exert transcriptional control on the genes it regulates and as consequence on the phenotypes controlled by this response regulator. Here, we include the raw count data (rawcounts.txt) for all analyzed samples, as well as the experimental designed used to perform the statistical results (target.txt).
DOI: 10.5281/zenodo.7548946
title: Phenotypes controlled by the Brucella abortus two component system BvrR/BvrS differ in their dependence on the phosphorylation of the response regulator BvrR

description: <em>Brucella abortus</em> is a zoonotic pathogen whose ability to survive intracellularly at the endoplasmic reticulum is essential for its virulence. The two-component system BvrR/BvrS is essential for intracellular survival due to the transcriptional control of the type IV secretion system VirB and its transcriptional regulator VjbR. In addition, this system is a master regulator of several traits including membrane conformation by controlling proteins such as Omp25. To understand the regulatory strategies used by BvrR we generated dominant positive and negative versions of this response regulator which, in addition to the wild type version, were introduced in a BvrR- background. We then characterized BvrRS-controlled phenotypes and the expression of proteins controlled by the system. We found two regulatory patterns exerted by BvrR. The first pattern was represented by resistance to polymyxin and expression of Omp25 (membrane conformation) which were restored to normal levels by the dominant positive and the wild type version, but not the dominant negative version, of BvrR. The second pattern was represented by intracellular survival and expression of VjbR and VirB (virulence) which were, again, fully complemented by wild type and the dominant versions of BvrR but, significantly restored by complementation with the dominant negative version of the response regulator. These results suggested a differential binding of unphosphorylated BvrR with promoters of the genes it controls. We confirmed this hypothesis by showing that the dominant negative version of BvrR was not able to interact with the promoter of <em>omp25</em> but was able to interact with the promoter of <em>vjbR</em>. Furthermore, a global transcriptional analysis indicated that some genes respond to the presence of the dominant negative version of BvrR. Thus, BvrR possesses diverse strategies to exert transcriptional control on the genes it regulates and as consequence on the phenotypes controlled by this response regulator. Here, we include the raw count data (rawcounts.txt) for all analyzed samples, as well as the experimental designed used to perform the statistical results (target.txt).
DOI: 10.6084/m9.figshare.21919176
title: Cuticular profiling raw data

description: Raw dataset for Cuticular profiling of insecticide resistant <em>Aedes aegypti</em>
DOI: 10.6084/m9.figshare.21918981
title: Suplementary Table 3A, 3B and 3C

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups</strong> <strong>according to &lt;90 and ≥90 days follow-up.</strong> <br> <br> <strong>Table 3C. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.21918981.v2
title: Suplementary Table 3A, 3B and 3C

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups</strong> <strong>according to &lt;90 and ≥90 days follow-up.</strong> <br> <br> <strong>Table 3C. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.21918981.v1
title: Suplementary table 3A, 3B and 3C

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups</strong> <strong>according to &lt;90 and ≥90 days follow-up.</strong> <br> <br> <strong>Table 3C. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.3761562.v2462
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7549004
title: video games recommendations dataset crafted by human experts

description: video games recommendations dataset crafted by human experts
DOI: 10.5281/zenodo.7549003
title: video games recommendations dataset crafted by human experts

description: video games recommendations dataset crafted by human experts
DOI: 10.6084/m9.figshare.21919194
title: PDB_files_INS_INSR

description: A list of structures similar to Insulin and Insulin Receptor
DOI: 10.6084/m9.figshare.21919194.v1
title: PDB_files_INS_INSR

description: A list of structures similar to Insulin and Insulin Receptor
DOI: 10.5281/zenodo.7549026
title: movies recommendations dataset using the "BestSimilar" database

description: movies recommendations dataset using the "BestSimilar" database
DOI: 10.5281/zenodo.7549025
title: movies recommendations dataset using the "BestSimilar" database

description: movies recommendations dataset using the "BestSimilar" database
DOI: 10.5517/ccdc.csd.cc29yhxp
title: CCDC 2143523: Experimental Crystal Structure Determination

description: Related Article: Ya-Nan Wu, Li-Li Zhu, Yi Zhao, Si-Yu Xu, Pei-Wen Huang, Bi-Cui Chen, Zi-Yang Huang, Xiao-Ying Huang, Jin Chen, Ke-Zhao Du|2023|Inorg.Chem.|62|1062|doi:10.1021/acs.inorgchem.2c04076
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20246763
title: Multivariate Analyses

description: Data files and R code used for multivariate analyses, including PERMANOVA tests and NMDS ordinations
DOI: 10.6084/m9.figshare.20246763.v7
title: Multivariate Analyses

description: Data files and R code used for multivariate analyses, including PERMANOVA tests and NMDS ordinations
DOI: 10.26093/cds/vizier.36680107
title: A399-401 144MHz images

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A deep study of A399-401: Application for wide-field facet calibration.' (bibcode: 2022A&A...668A.107D)
DOI: 10.26093/cds/vizier.36680039
title: SNR CTB87 14.7GHz and 17.3GHz total intensity maps

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Extended radio halo of the supernova remnant CTB87 (G74.9+1.2).' (bibcode: 2022A&A...668A..39R)
DOI: 10.26093/cds/vizier.36680067
title: CO in the ALMA Radio-source Catalogue (ARC)

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'CO in the ALMA Radio-source Catalogue (ARC): The molecular gas content of radio galaxies as a function of redshift.' (bibcode: 2022A&A...668A..67A)
DOI: 10.26093/cds/vizier.36690001
title: Abell 2256 radio images

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Deep low-frequency radio observations of Abell 2256. II: The ultra steep spectrum radio halo.' (bibcode: 2023A&A...669A...1R)
DOI: 10.26093/cds/vizier.36690008
title: Nearby galaxies in LoTSS-DR2. II.

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Nearby galaxies in the LOFAR Two-metre Sky Survey. II. The magnetic field-gas relation.' (bibcode: 2023A&A...669A...8H)
DOI: 10.6084/m9.figshare.20246661
title: IRI Plots

description: Data files and R code used to create IRI plots
DOI: 10.6084/m9.figshare.20246661.v8
title: IRI Plots

description: Data files and R code used to create IRI plots
DOI: 10.6084/m9.figshare.20246661.v7
title: IRI Plots

description: Data files and R code used to create IRI plots
DOI: 10.5281/zenodo.7502452
title: Video Data: Spatiotemporal visual statistics of aquatic environments in the natural habitats of zebrafish

description: Video dataset accompanying " Spatiotemporal visual statistics of aquatic environments in the natural habitats of zebrafish." See accompanying Github repository for more documentation and analysis code.
description: Funding: HFSP RGY0079/2018
DOI: 10.5281/zenodo.7502451
title: Video Data: Spatiotemporal visual statistics of aquatic environments in the natural habitats of zebrafish

description: Video dataset accompanying " Spatiotemporal visual statistics of aquatic environments in the natural habitats of zebrafish." See accompanying Github repository for more documentation and analysis code.
description: Funding: HFSP RGY0079/2018
DOI: 10.6084/m9.figshare.21919227
title: Tribolium confusum genome assembly

description: Genome assembly for Tribolium confusum
DOI: 10.6084/m9.figshare.21919227.v1
title: Tribolium confusum genome assembly

description: Genome assembly for Tribolium confusum
DOI: 10.26093/cds/vizier.51640015
title: Exoplanets considered as Ariel's potential targets

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Ariel Target List; The Impact of TESS and the Potential for Characterizing Multiple Planets within a System.' (bibcode: 2022AJ....164...15E)
DOI: 10.26093/cds/vizier.51640184
title: ARMADA. II. Binaries astrometry & radial velocity

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'ARMADA. II. Further Detections of Inner Companions to Intermediate-mass Binaries with Microarcsecond Astrometry at CHARA and VLTI.' (bibcode: 2022AJ....164..184G)
DOI: 10.26093/cds/vizier.51640227
title: NIR spectra of 2M1155-79A and B

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Investigating 2M1155-79B; A Nearby, Young, Low-mass Star Actively Accreting from a Nearly Edge-on, Dusty Disk.' (bibcode: 2022AJ....164..227D)
DOI: 10.26093/cds/vizier.19130146
title: The blazar B2 1420+32 opt. & gamma LCs & opt. sp.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The changing-look blazar B2 1420+32.' (bibcode: 2021ApJ...913..146M)
DOI: 10.26093/cds/vizier.19140115
title: Spitzer MIR and NIR study of Sh2-208

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Spitzer mid-infrared study of Sh 2-208: evolution of protoplanetary disks in low-metallicity environments.' (bibcode: 2021ApJ...914..115Y)
DOI: 10.26093/cds/vizier.19140121
title: Limits on SMBH binaries from NANOGrav

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The NANOGrav 11yr data set: limits on supermassive black hole binaries in galaxies within 500Mpc.' (bibcode: 2021ApJ...914..121A)
DOI: 10.26093/cds/vizier.19140122
title: Stellar polarimetry with Gaia DR2 data

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Two-component magnetic field along the line of sight to the Perseus molecular cloud: contribution of the foreground Taurus molecular cloud.' (bibcode: 2021ApJ...914..122D)
DOI: 10.26093/cds/vizier.19140042
title: Radio follow-up to 4FGL-DR2 unassociated sources

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Radio counterpart candidates to unassociated 4FGL-DR2 sources.' (bibcode: 2021ApJ...914...42B)
DOI: 10.26093/cds/vizier.19140050
title: Opt. phot. and GMOS & NIRES spectra of SN2019yvq

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'SN 2019yvq does not conform to SN Ia explosion models.' (bibcode: 2021ApJ...914...50T)
DOI: 10.26093/cds/vizier.19140054
title: Deep FUV observations of NGC6946, NGC628 & NGC5457

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Comparing the inner and outer star-forming complexes in the nearby spiral galaxies NGC 628, NGC 5457, and NGC 6946 using UVIT observations.' (bibcode: 2021ApJ...914...54Y)
DOI: 10.26093/cds/vizier.22620039
title: Tidal features in HSC-SSP early-type galaxies

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Massive early-type galaxies in the HSC-SSP: flux fraction of tidal features and merger rates.' (bibcode: 2022ApJS..262...39H)
DOI: 10.5519/qd.ebazqjbq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1096 records)
DOI: 10.26093/cds/vizier.22620051
title: Swift X-ray obs. of 31 SMS4 QSOs & radio gal.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'A Swift X-ray view of the SMS4 sample-X-ray properties of 31 quasars and radio galaxies.' (bibcode: 2022ApJS..262...51M)
DOI: 10.26093/cds/vizier.22630013
title: 34.8-50GHz obs. toward Orion KL

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'A Q-band line survey toward Orion KL using the Tianma Radio Telescope.' (bibcode: 2022ApJS..263...13L)
DOI: 10.26093/cds/vizier.22630015
title: Cassini Visual & IR obs. of Saturn & Jupiter

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Jupiter and Saturn as spectral analogs for extrasolar gas giants and brown dwarfs.' (bibcode: 2022ApJS..263...15C)
DOI: 10.26093/cds/vizier.22630009
title: Multiple maser transitions from G358.93-0.03 burst

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'New methanol maser transitions and maser variability identified from an accretion burst source G358.93-0.03.' (bibcode: 2022ApJS..263....9M)
DOI: 10.6084/m9.figshare.21280062
title: American Geophysical Union poster data

description: Full data set used in: <br> Faulkes Z. The “wall of text” visual structure of academic conference posters. <em>Frontiers in Communication</em> <strong>8</strong>: 1063345. https://doi.org/10.3389/fcomm.2023.1063345 <br> Data on posters from American Geophysical Union. https://www.agu.org/Learn-and-Develop/Learn/Student-Competitions/Virtual-Poster-Showcase/Past-showcase-winners <br>
DOI: 10.6084/m9.figshare.21280062.v1
title: American Geophysical Union poster data

description: Full data set used in: <br> Faulkes Z. The “wall of text” visual structure of academic conference posters. <em>Frontiers in Communication</em> <strong>8</strong>: 1063345. https://doi.org/10.3389/fcomm.2023.1063345 <br> Data on posters from American Geophysical Union. https://www.agu.org/Learn-and-Develop/Learn/Student-Competitions/Virtual-Poster-Showcase/Past-showcase-winners <br>
DOI: 10.21227/hh2m-zd52
title: Reasoning Affordances with Tables and Bar Charts

description: A viewer's existing beliefs can prevent accurate reasoning with data visualizations. In particular, confirmation bias can cause people to overweigh information that confirms their beliefs, and dismiss information that disconfirms them. We tested whether confirmation bias exists when people reason with visualized data and whether certain visualization designs can elicit less biased reasoning strategies. We asked crowdworkers to solve reasoning problems that had the potential to evoke both poor reasoning strategies and confirmation bias. We created two scenarios, one in which we primed people with a belief before asking them to make a decision, and another in which people held pre-existing beliefs. The data was presented as either a table, a bar table, or a bar chart. To correctly solve the problem, participants should use a complex reasoning strategy to compare two ratios, each between two pairs of values. But participants could also be tempted to use simpler, superficial heuristics, shortcuts, or biased strategies to reason about the problem. Presenting the data in a table format helped participants reason with the correct ratio strategy while showing the data as a bar table or a bar chart led participants towards incorrect heuristics. Confirmation bias was not significantly present when beliefs were primed, but it was present when beliefs were pre-existing. Additionally, the table presentation format was more likely to afford the ratio reasoning strategy, and the use of ratio strategy was more likely to lead to the correct answer. These findings suggest that data presentation formats can affect affordances for reasoning.
DOI: 10.5519/qd.vqsuyk4n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (41673 records)
DOI: 10.5517/ccdc.csd.cc2b81pc
title: CCDC 2152692: Experimental Crystal Structure Determination

description: Related Article: Xue Zhao, Manussada Ratanasak, Kazumasa Kon, Jun-ya Hasegawa, Kazuaki Ishihara|2022|Chemical Science|14|566|doi:10.1039/D2SC05413B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6kz3
title: CCDC 2151275: Experimental Crystal Structure Determination

description: Related Article: Xue Zhao, Manussada Ratanasak, Kazumasa Kon, Jun-ya Hasegawa, Kazuaki Ishihara|2022|Chemical Science|14|566|doi:10.1039/D2SC05413B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b97c8
title: CCDC 2153829: Experimental Crystal Structure Determination

description: Related Article: Maria Takahashi, Tsuyoshi Asatani, Tatsuki Morimoto, Yoshinobu Kamakura, Kotaro Fujii, Masatomo Yashima, Naoki Hosokawa, Yusuke Tamaki, Osamu Ishitani|2022|Chemical Science|14|691|doi:10.1039/D2SC04252E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b97d9
title: CCDC 2153830: Experimental Crystal Structure Determination

description: Related Article: Maria Takahashi, Tsuyoshi Asatani, Tatsuki Morimoto, Yoshinobu Kamakura, Kotaro Fujii, Masatomo Yashima, Naoki Hosokawa, Yusuke Tamaki, Osamu Ishitani|2022|Chemical Science|14|691|doi:10.1039/D2SC04252E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c111j
title: CCDC 2175736: Experimental Crystal Structure Determination

description: Related Article: Alice Johnson, Chibuzor Olelewe, Jong Hyun Kim, Joshua Northcote-Smith, R. Tyler Mertens, Ginevra Passeri, Kuldip Singh, Samuel G. Awuah, Kogularamanan Suntharalingam|2022|Chemical Science|14|557|doi:10.1039/D2SC04707A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c112k
title: CCDC 2175737: Experimental Crystal Structure Determination

description: Related Article: Alice Johnson, Chibuzor Olelewe, Jong Hyun Kim, Joshua Northcote-Smith, R. Tyler Mertens, Ginevra Passeri, Kuldip Singh, Samuel G. Awuah, Kogularamanan Suntharalingam|2022|Chemical Science|14|557|doi:10.1039/D2SC04707A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.