cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15164520.v1
title: dataset_brightness.csv

description: Results (in terms of brightness using CAM18sl, in bright) of 12 observers (7 young, 5 older adult) in the brightness matching experiment (Fig. 5)
DOI: 10.6084/m9.figshare.24297547.v2
title: Fig4_FigS4_FigS7_ToD_Data

description: Data underlying <b>Figures 4, S4</b> and <b>S7 </b>of the manuscript "Time-of-day effects of drugs revealed by high-throughput deep phenotyping." by C. Ector <i>et al.</i> with the corresponding author A.E.Granada.Methodology described in the Methods section of above mentioned manuscript.
DOI: 10.21233/kjsj-pc54
title: Kholboo Lake ostracode surface sample dataset

description: Raw data for the Kholboo Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.1476176.v1
title: SM3_ExampleScript_Data_From_Defining an additivity framework for mixture research in inducible whole-cell biosensors

description: Tutorial, R-script and Dataset: Fitting non-monotonic dose-response with differential maximal effects and analysis of departures from additivity based on multivariate Loewe additivity using R. From: Defining an additivity framework for mixture research in inducible whole-cell biosensors Martin-Betancor, K1; Ritz, C2; Fernández-Piñas, F1; Leganés, F1; & Rodea-Palomares I1* 1 Departament of Biology, Facultad de Ciencias, Universidad Autónoma de Madrid. 28049 Madrid, Spain. 2 Department of Nutrition, Exercise and Sports, Faculty of Science, University of Copenhagen, Rolighedsvej 30, DK-1958 Frederiksberg C, Denmark. *Corresponding author: Ismael Rodea-Palomares Mailing address: Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid. C/ Darwin, 2. 28049, Madrid. Spain. Tel.: +34 914978180<br>Fax: +34 914978344 E-mail: ismael.rodea@uam.es
DOI: 10.17632/9zghyckn85
title: Volatile organic compound data of ready-to-cook tuna fish-burgers: time evolution in function of different and/or combined mild preservation technologies and relevant statistical analysis.

description: Volatile organic compound (VOC) composition from ready-to-cook tuna fish-burgers, prepared with and without a protective microbial strain (Lactobacillus paracasei) and/or stored with modified atmosphere packaging (MAP, 5% O2 and 95% CO2), were extracted by headspace solid-phase microextraction and analyzed by gas chromatography-mass spectrometry (HS-SPME-GC-MS) during the burger shelf-life. The collected data showed volatile composition profiles in function of the mild preservation technologies employed and the storage time. Furthermore, statistical data treatment (principal component analysis and Pearson’s coefficients) highlighted differences among samples and positive/negative correlations during the storage time.
DOI: 10.6084/m9.figshare.10735499.v1
title: Supplementary Material for: Active Cancer and Elevated D-Dimer Are Risk Factors for In-Hospital Ischemic Stroke

description: <b><i>Background and Purpose:</i></b> Little attention has been paid to the pathogenesis of in-hospital stroke, despite poor outcomes and a longer time from stroke onset to treatment. We studied the pathophysiology and biomarkers for detecting patients who progress to in-hospital ischemic stroke (IHS). <b><i>Methods:</i></b> Seventy-nine patients with IHS were sequentially recruited in the period 2011–2017. Their characteristics, care, and outcomes were compared with 933 patients who had an out-of-hospital ischemic stroke (OHS) using a prospectively collected database of the Tokushima University Stroke Registry. <b><i>Results:</i></b> Active cancer and coronary artery disease were more prevalent in patients with IHS than in those with OHS (53.2 and 27.8% vs. 2.0 and 10.9%, respectively; <i>p</i> &lt; 0.001), the median onset-to-evaluation time was longer (300 vs. 240 min; <i>p</i> = 0.015), and the undetermined etiology was significantly higher (36.7 vs. 2.4%; <i>p</i> &lt; 0.001). Although there was no significant difference in stroke severity at onset between the groups, patients with IHS had higher modified Rankin Scale (mRS) scores (3–6) at discharge (67.1 vs. 50.3%; <i>p</i> = 0.004) and rates of death during hospitalization (16.5 vs. 2.9%; <i>p</i> &lt; 0.001). D-dimer (5.8 vs. 0.8 µg/mL; <i>p</i> &lt; 0.001) and fibrinogen (532 vs. 430 mg/dL; <i>p</i> = 0.014) plasma levels at the time of onset were significantly higher in patients with IHS after propensity score matching. Multivariate logistic regression analysis revealed that active cancer (odds ratio [OR] 2.30; 95% confidence interval [CI] 1.26–4.20), prestroke mRS scores 3–5 (OR 6.78; 95% CI 3.96–11.61), female sex (OR 1.57; 95% CI 1.19–2.08), and age ≥75 years (OR 2.36; 95% CI 1.80–3.08) were associated with poor outcomes. <b><i>Conclusions:</i></b> Patients with IHS had poorer outcomes than those with OHS because of a higher prevalence of active cancer and functional dependence before stroke onset. Elevated plasma levels of D-dimer and fibrinogen, especially with active cancer, can help identify patients who are at a higher risk of progression to IHS.
DOI: 10.6084/m9.figshare.28712073.v1
title: Additional file 2 of Dynamics of T cell subpopulations and plasma cytokines during the first year of antineoplastic therapy in patients with breast cancer: the BEGYN-1 study

description: Supplementary Material 2: Additional file 1: Table S1 Flow cytometry antibodies.
DOI: 10.6084/m9.figshare.5715634.v1
title: Validating the analytic results (case 2 in Appendix B) from Matter rogue waves for the three-component Gross–Pitaevskii equations in the spinor Bose–Einstein condensates

description: Analytic results (case 2 in Appendix B) have been verified with Mathematica software
DOI: 10.17028/rd.lboro.9912821.v1
title: Supplementary information files for 'Improving energy efficiency in manufacturing using peer benchmarking to influence machine design innovation'

description: Supplementary information files for 'Improving energy efficiency in manufacturing using peer benchmarking to influence machine design innovation'<br>Abstract:Energy efficiency in manufacturing is important for overall sustainability of society. This paper combines three observations to improve an overlooked part of the energy efficiency support infrastructure in food and drink manufacturing: innovation capability. First, variations in machine and process design produce significant differences in energy efficiency; second, these differences are not widely known or valued because comparable machine energy data are not gathered for the vast majority of products, so machine and process design is under-used as a route to efficiency improvement; third, peer benchmarking has proved to be an effective tool for stimulating change in other contexts, but has not been used at machine level in manufacturing. This paper describes and makes the case for a self-sustaining system in which machines would be validly compared on energy consumption and peer benchmarking would stimulate innovation in machine and process design for food manufacturing. The system, to be tested in a feasibility study, would benefit both food manufacturers and stakeholders. It would avoid dependence on public funding and enable stakeholders to provide value from the data. The paper contains the academic underpinning for the system and sets out an effective means of using it to achieve practical change.<br>
DOI: 10.17632/379cw2nw7r
title: The impact of a firm's ecological, social and governance responsibility on the cost of equity in emerging markets

description: Data set includes annual data regarding cost of equity, ESG score, Ecological score, Social score, Governance score, leverage, market capitalization, price to book ratio, Beta, country of origin, sector and industry identifications for 693 public non-financial companies from emerging markets for the time period from 2015 to 2019. Data was gathered by using Thomson Reuters Eikon. Data was used in a Master's thesis to test hypotheses regarding the impact of a firm's ESG responsibility on the cost of equity in emerging markets. The main finding of the thesis is that there is a significant negative impact of a firm's ESG responsibility on the cost of equity in emerging markets.
DOI: 10.6084/m9.figshare.21516258.v1
title: Supplementary Information for "Diverse methylmercury (MeHg) producers and degraders inhabit acid mine drainage sediments but only a few taxa correlate with MeHg accumulation"

description: Supplementary Information for "Diverse methylmercury (MeHg) producers and degraders inhabit acid mine drainage sediments but only a few taxa correlate with MeHg accumulation", including Supplementary Methods，Supplementary Results, Figure S1-S13 and Table S11-S12. <br>
DOI: 10.6084/m9.figshare.25442275.v1
title: Supplementary Material for: Pharmaceutical Polygon Fingerprinting Matrix System (PharmP-FM): A Potential Tool for Pharmaceutical Quality Control

description: Background & Purpose
A new discriminatory system for evaluating the quality of pharmaceuticals is described in this paper as the Pharmaceutical Polygon Fingerprint Matrix system (PharmP-FM). To assess the quality of various pharmaceutical formulations and dosage forms, PharmP-FM uses both qualitative and quantitative fingerprinting techniques. The system expands on the SeDeM expert system, which was initially created to evaluate the suitability of powder for direct compression. PharmP-FM creates a graphical representation of the product's pharmaceutical quality using a set of input parameters. The Performance Index (PI), Normalized Parameter Index (NPI), and Formulation Index (FI) are among the system's output parameters.
Methods
To evaluate PharmP-FM's performance, the paper examines its application in assessing batch-to-batch variability of weight loss supplement capsules and the quality of multisource brand products of levothyroxine tablets. The findings demonstrate PharmP-FM's capability to identify variations in pharmaceutical quality across these products.
Results & Conclusion
This paper concludes that PharmP-FM exhibits potential promise as a pharmaceutical quality assessment tool. Its user-friendly nature and adaptability to different formulations and dosage forms make it a versatile discriminatory system. Additionally, PharmP-FM is an open-ended and scalable system that can incorporate additional parameters and accommodate products of varying complexities. The study's results strongly suggest its potential as a potential tool for pharmaceutical quality assessment.
DOI: 10.6084/m9.figshare.7609859.v1
title: Jerash Maps

description: Maps of the decapolis city of Jerash / Gerasa in Jordan to accompany:<br>Lichtenberger, A., Raja, R., & Stott, D. (2019). Mapping Gerasa: A new and open data map of the site. <i>Antiquity,</i> <i>93</i>(367), E7. doi:10.15184/aqy.2019.9<br><br>These are:1) a map of features discovered using remote sensing techniques2) previously mapped archaeological remains3) as 2, but with key buildings numbered and annotated in the attached PDF.<br>
DOI: 10.6084/m9.figshare.14627586.v1
title: Data on Financial Development, Trade Globalisation and Agricultural Output Performance among BRICS and WAMZ member countries

description: The data is used to estimate the impact of financial development and trade globalisation on Agricultural output performance of WAMZ and BRICS member countries
DOI: 10.6084/m9.figshare.11855817.v1
title: Chia Annotated Datasets

description: Annotated datasets from CHIA Annotation Model research project. Contains both <i>with_scope</i> and <i>without_scope</i> datasets.
DOI: 10.6084/m9.figshare.13271102.v1
title: Subjective fear dataset

description: This dataset includes the visually induced fear signature (VIFS) and the fMRI data from 67 healthy human subjects, which is used to develop the VIFS.The fMRI data is provided in fmri_data object format from the CANlab Core Tools repository for neuroimaging data analysis. See https://canlab.github.io/
DOI: 10.6084/m9.figshare.4748083.v1
title: Supplementary Material for: Vitamin D and Pre-Eclampsia: Original Data, Systematic Review and Meta-Analysis

description: <strong><em>Background/Aims:</em></strong> Vitamin D may protect from pre-eclampsia through influences on immune modulation and vascular function. To evaluate the role of vitamin D in the development of pre-eclampsia, we conducted a systematic review and meta-analysis including novel data from 2 large-scale epidemiological studies. <b><i>Methods:</i></b> PubMed, EMBASE and the Cochrane Central Register of Controlled Trials were searched for prospective observational studies of association between vitamin D supplementation or status (measured by maternal 25-hydroxyvitamin D, 25(OH)D) with a subsequent risk of pre-eclampsia, or randomised controlled trials using vitamin D supplementation to prevent pre-eclampsia. The Hungarian Case-Control Surveillance of Congenital Abnormalities (HCCSCA) and the Avon Longitudinal Study of Parents and Children (ALSPAC) were included in meta-analyses with published studies. <b><i>Results:</i></b> Mothers receiving vitamin D supplementation earlier in pregnancy had lower odds of pre-eclampsia [pooled odds ratios (OR) 0.81 and 95% confidence interval (CI) 0.75-0.87, p = 2.4 × 10<sup>-8</sup>, 2 studies] in the meta-analysis of published studies with HCCSCA. The meta-analysis of published studies with ALSPAC suggested an association between higher serum 25(OH)D levels and a reduced risk of pre-eclampsia (pooled OR 0.52 and 95% CI 0.30-0.89, p = 0.02, 6 studies). Randomised trials of supplementation were suggestive of protective association (pooled OR 0.66 and 95% CI 0.52-0.83, p = 0.001, 4 studies). <b><i>Conclusions:</i></b> This study suggests that low maternal serum 25(OH)D concentrations increase pre-eclampsia risk and that vitamin D supplementation lowers this risk. The quality of evidence is insufficient to determine a causal association, which highlights the need for adequately powered clinical trials.
DOI: 10.25381/cput.25533073.v2
title: Leadership in healthcare quality: strengthening compliance capacity for the regulations relating to standards for emergency medical services

description: Ethical Clearance Certificate No. 2021 FBMSREC 078Leadership competencies are key to healthcare quality. This study addresses the eligibility of Emergency Medical Service (EMS) and compliance with regulations for quality standards. A mixed methods explanatory sequential design was used to investigate EMS quality-related leadership and management capacity. A survey of EMS managers from nine provinces defined the problem space for quality improvement. Non-participant observations and interviews with key informants offered a deep appreciation for factors enabling and impeding quality improvement. The findings exposed the need to develop EMS quality management competencies. The survey data and ATLAS.ti codebook summary from the non-participant observations and interviews are presented. These findings are of value to EMS and other public service policymakers, managers, clinicians and academics in South Africa and other emerging EMS health systems.
DOI: 10.6084/m9.figshare.28643759.v1
title: Plasma Protein Expression Profiles in Advanced Ovarian Cancer (n=9): Association with Treatment Response and CAR-T Cell Activity (Olink Oncology II Panel Dataset)

description: <b>Plasma Protein Expression Profiles in Advanced Ovarian Cancer Patients (n=9) Stratified by Treatment Response</b>This dataset contains plasma protein expression levels of nine patients with advanced ovarian cancer, analyzed using the Olink Oncology II Panel. Patients were categorized into three groups based on treatment response and duration of disease stability:<b>PD group</b> (Progressive Disease): 2 patients with a best overall response of PD.<b>SD_1 group</b> (Short-term Stable Disease): 3 patients with a stable disease duration of less than 3 months.<b>SD_2 group</b> (Long-term Stable Disease): 4 patients with a stable disease duration of 3 months or more.Key findings include:At baseline, the SD_1 group showed significant downregulation of Kallikrein-Related Peptidase 13 (KLK13) compared to the PD group.The SD_2 group exhibited significant upregulation of Human Kallikrein Gene 14 (hK14/KLK14) compared to the PD group.Compared to the SD_1 group, the SD_2 group demonstrated significant downregulation of Cornulin (CRNN) and upregulation of C-X-C Motif Chemokine 17 (CXCL17) .All plasma protein assays passed quality control. Normalized protein expression values (NPX) are included.
DOI: 10.6084/m9.figshare.8187413.v1
title: Progesterone.xlsx

description: <b>progesterone levels on the day of embryo transfer</b>
DOI: 10.6084/m9.figshare.14578188.v1
title: HiTiSEA_2017-09

description: Daily files of human thermal-stress indices for September 2017 over South and East Asia
DOI: 10.6084/m9.figshare.14958792.v1
title: Supplementary Material for: Alternative lengthening of telomeres phenotype predicts progression risk in non-insulinomas in a Chinese cohort

description: Medicine
DOI: 10.6084/m9.figshare.23974317.v1
title: Dataset S1.xlsx

description: Paddy fields, as the largest anthropogenic wetlands on Earth, face a high risk of micronutrient loss through surface runoff and leaching due to their frequent irrigation-drainage cycles, as well as removal with crop harvest. While micronutrient’s losses largely impede biological nitrogen fixation (BNF) in soils, agricultural practices that retain micronutrients and thus increase BNF in paddy soils remain underexplored. Using a long-term (40 years) field experiment, we showed that manure and straw inputs substantially increased the content and bioavailability of micronutrients, including molybdenum (Mo) and vanadium (V), compared to the soil without fertilization or with mineral fertilization only. The total content and bioavailability of Mo and V had a strong correlation with microbial necromass and short-range ordered minerals. Metagenomic sequencing analysis further indicated that the content and bioavailability of micronutrients were strongly correlated with the abundance of the key N-fixing genera (i.e., Azospirillum and Bradyrhizobium). Unexpectedly, structural equation modeling (SEM) identified that microbial necromass exerted the strongest control on N-fixing genera, highlighting an underappreciated role of microbial necromass as a reservoir of micronutrients. Based on micronutrient’s bioavailability and metagenomic sequencing, we conclude that micronutrients are the key factor for BNF in paddy soils, offering significant implications for managing BNF in paddy soils.
DOI: 10.6084/m9.figshare.6450098.v1
title: Supplementary Material for: Rapid On-Site Evaluation of Fine-Needle Aspiration by Non-Cytopathologists: A Systematic Review and Meta-Analysis of Diagnostic Accuracy Studies for Adequacy Assessment

description: <b><i>Objective:</i></b> Rapid on-site evaluation (ROSE) has been shown to improve adequacy rates and reduce needle passes. ROSE is often performed by cytopathologists who have limited availability and may be costlier than alternatives. Several recent studies examined the use of alternative evaluators (AEs) for ROSE. A summary of this information could help inform guidelines regarding the use of AEs. The objective was to assess the accuracy of AEs compared to cytopathologists in assessing the adequacy of specimens during ROSE. <b><i>Study Design:</i></b> This was a systematic review and meta-analysis. Reporting and study quality were assessed using the STARD guidelines and QUADAS-2. All steps were performed independently by two evaluators. Summary estimates were obtained using the hierarchal method in Stata v14. Heterogeneity was evaluated using Higgins’ <i>I</i><sup>2</sup> statistic. <b><i>Results:</i></b> The systematic review identified 13 studies that were included in the meta-analysis. Summary estimates of sensitivity and specificity for AEs were 97% (95% CI: 92–99%) and 83% (95% CI: 68–92%). There was wide variation in accuracy statistics between studies (<i>I</i><sup>2</sup> = 0.99). <b><i>Conclusions:</i></b> AEs sometimes have accuracy that is close to cytopathologists. However, there is wide variability between studies, so it is not possible to provide a broad guideline regarding the use of AEs.
DOI: 10.6084/m9.figshare.13607096.v1
title: Subset for logistic regression analysis: socio-demographic data, social distance and the identification of mental health causes

description: Data collected following the methodology and procedures described in (1,2). The sample consisted of Chilean adults (18 years of age or older) and was stratified by age, gender, and educational level. Five hundred and eighty-three participants began the process to answer the questionnaires either in person or online. Before the analysis, we excluded incomplete records, questionnaires answered by Chilean people living outside of Chile, and foreign people living in Chile for less than 10 years. This article reports the results obtained from 395 participants (68%). The final sample included adults from 18 to 78 years of age with low, middle and high educational levels.<br>1. Scior K, Potts HW, Furnham AF. Awareness of schizophrenia and intellectual disability and stigma across ethnic groups in the UK. Psychiatry Res [Internet]. 2013 Jul 30 [cited 2019 Jan 5];208(2):125–30. Available from: https://www.sciencedirect.com/science/article/pii/S0165178112005604?via=ihub<br>2. Scior K, Furnham A. Development and validation of the Intellectual Disability Literacy Scale for assessment of knowledge, beliefs and attitudes to intellectual disability. Res Dev Disabil [Internet]. 2011 Sep [cited 2017 Dec 31];32(5):1530–41. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21377320<br>
DOI: 10.6084/m9.figshare.23142620.v1
title: Supplementary Material for: Age-Related Prevalence of Open Ductus Arteriosus in Full-Term Newborns

description: <b><i>Background:</i></b> The ductus arteriosus is part of the fetal circulation. Normally, the vessel closes during the cardiac transition. Delayed closure is associated with complications. The aim of this study was to evaluate the age-related prevalence of open ductus arteriosus in full-term neonates. <b><i>Methods:</i></b> Echocardiograms were collected in the population study, the Copenhagen Baby Heart Study. The present study included full-term neonates with an echocardiogram performed within 28 days after birth. All echocardiograms were reviewed to assess ductus arteriosus patency. <b><i>Results:</i></b> A total of 21,649 neonates were included. In neonates examined at day zero and day seven, an open ductus arteriosus was found in 36% and 0.6%, respectively. Beyond day seven, the prevalence remained stable at 0.6%. <b><i>Conclusion:</i></b> More than one-third of full-term neonates had an open ductus arteriosus on the first day of life, declining rapidly within the first week and stabilizing below 1% after day seven.