cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14891591.v1
title: Neoichnological study of two species of burrowing darkling beetles (Coleoptera: Tenebrionidae) from larval to adult stages

description: Beetles (Coleoptera) are a critical component of terrestrial ecosystems filling numerous ecological roles. Soil-dwelling beetles play an important role in pedogenesis through the production of biogenic structures throughout their life cycle. Given their life habits, beetle trace fossils should be abundant in the fossil record and a number of ichnotaxa have been attributed to beetles, yet there is still much to learn about their trace-making techniques and the variety of morphologies of traces they can produce throughout their life cycle. The Tenebrionidae (darkling beetles) is a common, globally distributed group that includes many soil-dwelling species from a variety of environments. The purpose of this project was to gain a better understanding of biogenic structures produced during each life stage of two species of burrowing darkling beetles, <i>Zophobas morio</i> F. and <i>Tenebrio molitor</i> L. Single to multiple specimens of each species were placed in variably sized enclosures filled with massive and layered sediment with and without layers of food. Biogenic structures produced by the two species were similar, but distinct between each life stage and associated with different behaviors. Observed biogenic structures are comparable to <i>Palaeophycus, Planolites, Fictovichnus, Rebuffoichnus, Pallichnus, Taenidium, Skolithos,</i> and <i>Conichnus</i> depending on the life stage. Neoichnological studies such as this can aid in the understanding of biogenic structures in the fossil record. Being able to effectively link continental traces to trace makers will ultimately improve our understanding of the composition of ancient terrestrial ecosystems.
DOI: 10.6084/m9.figshare.17104418
title: Developmental trajectories of maternal mind - mindedness

description: The dataset was build to investigate developmental trajectories in mind-mindedness across the first year of life and the role of possible moderators
DOI: 10.6084/m9.figshare.17104418.v2
title: Developmental trajectories of maternal mind - mindedness

description: The dataset was build to investigate developmental trajectories in mind-mindedness across the first year of life and the role of possible moderators
DOI: 10.6084/m9.figshare.17104418.v1
title: Developmental trajectories of maternal mind - mindedness

description: The dataset was build to investigate developmental trajectories in mind-mindedness across the first year of life and the role of possible moderators
DOI: 10.6084/m9.figshare.16641139
title: Data_InVivo-Exp.xlsx

description: Data to desing and conduct <i>in vivo</i> evolution experiments with blood-borne parasitic microbes.<br>
DOI: 10.6084/m9.figshare.16641139.v1
title: Data_InVivo-Exp.xlsx

description: Data to desing and conduct <i>in vivo</i> evolution experiments with blood-borne parasitic microbes.<br>
DOI: 10.21227/wwxx-r437
title: data 

description: data of the paper
DOI: 10.21227/efhp-j679
title: metallographic image – hardness (HV) – corrosion potential (Ecorr)

description: The use of metallographic images to predict the mechanical properties of materials and their corrosion behavior is helpful in achieving nondestructive detection and quality control. Taking extruded Al-Zn-Mg alloys with different surface microstructures as example materials, 4,800 sets of “metallographic image – hardness (HV) – corrosion potential (Ecorr)” data were experimentally collected to establish accurately correlate the metallographic images, mechanical property, and corrosion behavior, which can provide theoretical support for intelligent and nondestructive testing methods of engineering materials.
DOI: 10.5281/zenodo.6299108
title: Random sample of habitat suitability for wolves in Scotland

description: A rule-based habitat suitability model was created for wolves (<em>Canis lupus</em>) in mainland Scotland. Six variations of the model were run, in order to test sensitivity to changes in input values. In order to test for difference in the outputs of the six models, 500 random points were sampled from all six models, and then a test for statistical difference performed. This dataset constitutes the values of the 500 random points, where 1 indicates complete suitability and 0 indicates complete unsuitability.
DOI: 10.5281/zenodo.6299107
title: Random sample of habitat suitability for wolves in Scotland

description: A rule-based habitat suitability model was created for wolves (<em>Canis lupus</em>) in mainland Scotland. Six variations of the model were run, in order to test sensitivity to changes in input values. In order to test for difference in the outputs of the six models, 500 random points were sampled from all six models, and then a test for statistical difference performed. This dataset constitutes the values of the 500 random points, where 1 indicates complete suitability and 0 indicates complete unsuitability.
DOI: 10.25345/c5h12v87k
title: MassIVE MSV000088923 - Lithospermum officinale AMF inoculation
title: Lithospermum officinale roots inoculated with arbuscular mycorrhizal fungi
DOI: 10.5281/zenodo.6299114
title: Replication package for Racial Diversity and Racial Policy Preferences: The Great Migration and Civil Rights

description: The package contains the material to replicate the paper Calderon, A., V. Fouka, and M. Tabellini. " Racial Diversity and Racial Policy Preferences: The Great Migration and Civil Rights," Review of Economic Studies
DOI: 10.5281/zenodo.6299118
title: Data set of "Context-sensitive Requirements Search in Natural Language Specifications"

description: We use this data set for the evaluation of our Context-sensitive Requirements Search approach. It contains three files, 15 searches and in total 692 annotations. <strong>Attribution</strong> The foundation of this data set is PURE: @dataset{ferrari_alessio_2018_1414117, author = {Ferrari, Alessio and Spagnolo, Giorgio Oronzo and Gnesi, Stefania}, title = {PURE: a Dataset of Public Requirements Documents}, month = sep, year = 2018, publisher = {Zenodo}, version = {1.0}, doi = {10.5281/zenodo.1414117}, url = {https://doi.org/10.5281/zenodo.1414117} } The original data is licensed under Creative Commons Attribution 4.0 International <strong>Annotations</strong> Each of the provided files contains annotations that we created with Label Studio for the corresponding file of the PURE data set. These annotations depict the search results of Plain Keyword Search (PKS) and the corresponding gold standard. The following is an example of an annotation in the .json file: <pre><code class="language-json">{ "id": "UnaxUjB6oY", "meta": { "text": ["0"] }, "type": "labels", "value": { "end": "/text()[2]", "text": "speed", "start": "/text()[2]", "labels": ["speed: train speed profile"], "endOffset": 364, "startOffset": 359, "globalOffsets": { "end": 1403, "start": 1398 } }, "origin": "manual", "to_name": "text", "from_name": "ner" },</code></pre> <strong>Important Json attributes to consider</strong> <strong>Meta</strong> We encode the relevance of each result in its metadata. <em>Example:</em> <pre><code class="language-json">"meta": { "text": ["0"] },</code></pre> 1 = relevant for this search and found by PKS 0 = irrelevant for this search but found by PKS -1 = relevant for this search and not found by PKS <strong>Labels</strong> This element is the search identifier we use in Label Studio. It corresponds to the table in the thesis that describes each search in detail. <em>Example:</em> <pre><code class="language-json">"labels": ["speed: train speed profile"],</code></pre> <strong>GlobalOffsets</strong> "globalOffsets" describes the position of a label in the text. <em>Example:</em> <pre><code class="language-json">"globalOffsets": { "end": 1403, "start": 1398 }</code></pre>
DOI: 10.6084/m9.figshare.19242756
title: Ab initio_Genes & Chloroplast

description: Ab initio annotated genes in the genome and circularized chloroplast assembly.
DOI: 10.5281/zenodo.6283285
title: msd-errors - Random walk data

description: The data related to the random walk components of the msd-error work, including truly random and temporarily anti-correlated random walks at a series of system and step size. These have either be analysed numerically or analytically (using kinisi, WLS, or OLS).<br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.5281/zenodo.6299029
title: MiP-Seq 100 genes data

description: Map out the spatial transcriptome of 100 genes in nucleus of the horizontal limb of the diagonal band (HDB) in hypothalamus by MiP-Seq. lefthyp.h5 - Raw image storage, can read and process using Innereye package(https://github.com/GangCaoLab/InnerEye).
DOI: 10.5281/zenodo.6299028
title: MiP-Seq 100 genes data

description: Map out the spatial transcriptome of 100 genes in nucleus of the horizontal limb of the diagonal band (HDB) in hypothalamus by MiP-Seq. lefthyp.h5 - Raw image storage, can read and process using Innereye package(https://github.com/GangCaoLab/InnerEye).
DOI: 10.25919/3wef-3851
title: Parkes observations for project PX500 semester 2021OCTS_28

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.5281/zenodo.6065611
title: Outputs of the Jupyter Notebook - MODIS MOD021KM and FIRMS

description: The dataset contains the outputs of the notebook "MODIS MOD021KM and FIRMS" published in The Environmental Data Science Book. <strong>Contributions</strong> <em>Notebook</em> Samuel Jackson (author), Science & Technology Facilities Council, @samueljackson92 Alejandro Coca-Castro (reviewer), The Alan Turing Institute, @acocac <em>Dataset originator/creator</em> MOD021KM MODIS Characterization Support Team (MCST) MODIS Adaptive Processing System (MODAPS) Firms University of Maryland <em>Dataset authors</em> MOD021KM MODIS Science Data Support Team (SDST) Firms NASA’s Applied Sciences Program <em>Dataset documentation</em> Louis Giglio, Wilfrid Schroeder, Joanne V. Hall, and Christopher O. Justice. MODIS Collection 6 Active Fire Product User’s Guide Revision B. Technical Report, NASA, 2018. URL: https://modis-fire.umd.edu/files/MODIS_C6_Fire_User_Guide_B.pdf.
DOI: 10.5281/zenodo.6065610
title: Outputs of the Jupyter Notebook - MODIS MOD021KM and FIRMS

description: The dataset contains the outputs of the notebook "MODIS MOD021KM and FIRMS" published in The Environmental Data Science Book. <strong>Contributions</strong> <em>Notebook</em> Samuel Jackson (author), Science & Technology Facilities Council, @samueljackson92 Alejandro Coca-Castro (reviewer), The Alan Turing Institute, @acocac <em>Dataset originator/creator</em> MOD021KM MODIS Characterization Support Team (MCST) MODIS Adaptive Processing System (MODAPS) Firms University of Maryland <em>Dataset authors</em> MOD021KM MODIS Science Data Support Team (SDST) Firms NASA’s Applied Sciences Program <em>Dataset documentation</em> Louis Giglio, Wilfrid Schroeder, Joanne V. Hall, and Christopher O. Justice. MODIS Collection 6 Active Fire Product User’s Guide Revision B. Technical Report, NASA, 2018. URL: https://modis-fire.umd.edu/files/MODIS_C6_Fire_User_Guide_B.pdf.
DOI: 10.5281/zenodo.6299135
title: Outputs of the Jupyter Notebook - SEVIRI Level 1.5

description: The dataset contains the outputs of the notebook "SEVIRI Level 1.5" published in The Environmental Data Science Book. <strong>Contributions</strong> <em>Notebook</em> Samuel Jackson (author), Science & Technology Facilities Council, @samueljackson92 Alejandro Coca-Castro (reviewer), The Alan Turing Institute, @acocac, 18/01/22 (latest revision) <em>Dataset originator/creator</em> SEVIRI Level 1.5 Image Data - MSG - 0 degree European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT) FRPPIXEL Land Surface Analysis, Satellite Application Facility on Land Surface Analysis (LSA SAF) <em>Dataset authors</em> SEVIRI Level 1.5 Image Data - MSG - 0 degree European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT) FRPPIXEL Land Surface Analysis, Satellite Application Facility on Land Surface Analysis (LSA SAF) <em>Dataset documentation</em> Martin Wooster, Jiangping He, Weidong Xu, and Alessio Lattanzio. Frp - product user manual. URL: https://nextcloud.lsasvcs.ipma.pt/s/pnDEepeq8zqRyrq (visited on 2021-11-18). MJ Wooster, G Roberts, PH Freeborn, W Xu, Y Govaerts, R Beeby, J He, A Lattanzio, D Fisher, and R Mullen. Lsa saf meteosat frp products–part 1: algorithms, product contents, and analysis. <em>Atmospheric Chemistry and Physics</em>, 15(22):13217–13239, 2015.
DOI: 10.5281/zenodo.6299134
title: Outputs of the Jupyter Notebook - SEVIRI Level 1.5

description: The dataset contains the outputs of the notebook "SEVIRI Level 1.5" published in The Environmental Data Science Book. <strong>Contributions</strong> <em>Notebook</em> Samuel Jackson (author), Science & Technology Facilities Council, @samueljackson92 Alejandro Coca-Castro (reviewer), The Alan Turing Institute, @acocac, 18/01/22 (latest revision) <em>Dataset originator/creator</em> SEVIRI Level 1.5 Image Data - MSG - 0 degree European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT) FRPPIXEL Land Surface Analysis, Satellite Application Facility on Land Surface Analysis (LSA SAF) <em>Dataset authors</em> SEVIRI Level 1.5 Image Data - MSG - 0 degree European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT) FRPPIXEL Land Surface Analysis, Satellite Application Facility on Land Surface Analysis (LSA SAF) <em>Dataset documentation</em> Martin Wooster, Jiangping He, Weidong Xu, and Alessio Lattanzio. Frp - product user manual. URL: https://nextcloud.lsasvcs.ipma.pt/s/pnDEepeq8zqRyrq (visited on 2021-11-18). MJ Wooster, G Roberts, PH Freeborn, W Xu, Y Govaerts, R Beeby, J He, A Lattanzio, D Fisher, and R Mullen. Lsa saf meteosat frp products–part 1: algorithms, product contents, and analysis. <em>Atmospheric Chemistry and Physics</em>, 15(22):13217–13239, 2015.
DOI: 10.6084/m9.figshare.17004637.v2
title: primary data.xlsx

description: W1D0: 75% of field capacity × undefoliation treatment;<br>W1D1: 75% of field capacity × 50% leaf defoliation treatment;W1D2: 75% of field capacity × 100% leaf defoliation treatment;W2D0: 55% of field capacity × undefoliation treatment;W2D1: 55% of field capacity × 50% leaf defoliation treatment;W2D2: 55% of field capacity × 100% leaf defoliation treatment;W3D0: 35% of field capacity × undefoliation treatment;W3D1: 35% of field capacity × 50% leaf defoliation treatment;W3D2: 35% of field capacity × 100% leaf defoliation treatment;0, 1, 2 and 3: before defoliation, 2 weeks, 5 weeks and 8 weeks after defoliation.A<sub>max</sub>: maximum net photosynthetic rate (μmol m<sup>−2</sup> s<sup>−1</sup>);E: transpiration rate (mmol m<sup>-2</sup> s<sup>-1</sup>);Gs: stomatal conductance (mmol m<sup>-2</sup> s<sup>-1</sup>);chl a/b: ratio of chlorophyll a and b (mg g<sup>-1</sup>);Leaf NSC concentration: leaf non-structural carbohydrates concentration (%);Stem NSC concentration: stem non-structural carbohydrates concentration (%);Root NSC concentration: root non-structural carbohydrates concentration (%);TB: total biomass (g);LB: leaf biomass (g);LMR: leaf mass ratio;SMR: stem mass ratio;RMR: root mass ratio;R/S: root to shoot mass ratio; RGR<sub>H</sub>: relative growth rate in the height (cm d<sup>-1</sup>).Defoliation clearly affects biomass allocation of the two species, but not leaf physiology. Considering the carbon or sink limitation, the growth of <i>S. japonica</i> and <i>R. pseudoacacia</i> may be limited by future global climate change scenarios.<br>
DOI: 10.34740/kaggle/dsv/3231620
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.6280956
title: dual scRNA-seq analysis of P. vivax infected hepatocytes

description: Malaria-causing <em>Plasmodium vivax</em> parasites can linger in the human liver for weeks to years, and then reactivate to cause recurrent blood-stage infection. While an important target for malaria eradication, little is known about the molecular features of the replicative and non-replicative states of intracellular <em>P. vivax</em> parasites, or their human host-cell dependencies and the host responses to them. Here, we leverage a bioengineered human microliver platform to culture patient-derived <em>P. vivax</em> parasites in primary human hepatocytes and conduct transcriptional profiling. By coupling enrichment strategies with bulk and single-cell analyses, we captured both parasite and host transcripts in individual hepatocytes throughout the infection course. We define host- and state-dependent transcriptional signatures and identify previously unappreciated populations of replicative and non-replicative parasites, sharing features with sexual transmissive forms. We find that infection suppresses transcription of key hepatocyte function genes, and that <em>P. vivax</em> elicits an innate immune response that can be manipulated to control infection. Our work provides an extendible framework and resource for understanding host-parasite interactions and reveals new insights into the biology of <em>P. vivax</em> dormancy and transmission.
description: This repository contains the processed data (final selection of cells) supporting the analyses published in the Cell Host and Microbes article. Two time-course experiments were performed, from which corresponding SeqWell libraries were generated. These libraries were subsequently enriched for P. vivax-derived transcripts. Only post-enrichment, infected libraries were sequenced from "Experiment 1" - these are denoted "SEQ50" and "SEQ100" with respect to the parasite load used for infection. Regarding the second experiment reported here, both pre-captured (mostly host) and post-capture, infected libraries were sequenced. Therefore "Experiment 2" accounts for all the "host" data and all the P.vivax data annotated "SEQ1" or "SEQ2" (two replicates per infection for each time-point). "p" denotes treatment with a PI4K inhibitor. The files are organized as follows: - Host_compartment_CHM_final_object.RDS : Seurat object (R statistical environment) with filtered, pre-capture Experiment 2 data - Host_compartment_Final_CHM_counts.tar : MatrixMarket formatted count data, with cell names and gene names included as tab-separated files - PvData_CHM_Final.RDS : Seurat object (R statistical environment) with filtered, parasite-enriched data from Experiments 1 and 2 (cell names as referenced above) - PvData_CHM_Final_counts.csv.gz : comma-separated files of SCT-transformed parasite count data matching the PvData_CHM_Final.RDS object - TableS2_Cell_Metadata.xls : Metadata for all cells reported in this repository
DOI: 10.5281/zenodo.5140503
title: dual scRNA-seq analysis of P. vivax infected hepatocytes

description: Malaria-causing <em>Plasmodium vivax</em> parasites can linger in the human liver for weeks to years, and then reactivate to cause recurrent blood-stage infection. While an important target for malaria eradication, little is known about the molecular features of the replicative and non-replicative states of intracellular <em>P. vivax</em> parasites, or their human host-cell dependencies and the host responses to them. Here, we leverage a bioengineered human microliver platform to culture patient-derived <em>P. vivax</em> parasites in primary human hepatocytes and conduct transcriptional profiling. By coupling enrichment strategies with bulk and single-cell analyses, we captured both parasite and host transcripts in individual hepatocytes throughout the infection course. We define host- and state-dependent transcriptional signatures and identify previously unappreciated populations of replicative and non-replicative parasites, sharing features with sexual transmissive forms. We find that infection suppresses transcription of key hepatocyte function genes, and that <em>P. vivax</em> elicits an innate immune response that can be manipulated to control infection. Our work provides an extendible framework and resource for understanding host-parasite interactions and reveals new insights into the biology of <em>P. vivax</em> dormancy and transmission.
description: This repository contains the processed data (final selection of cells) supporting the analyses published in the Cell Host and Microbes article. Two time-course experiments were performed, from which corresponding SeqWell libraries were generated. These libraries were subsequently enriched for P. vivax-derived transcripts. Only post-enrichment, infected libraries were sequenced from "Experiment 1" - these are denoted "SEQ50" and "SEQ100" with respect to the parasite load used for infection. Regarding the second experiment reported here, both pre-captured (mostly host) and post-capture, infected libraries were sequenced. Therefore "Experiment 2" accounts for all the "host" data and all the P.vivax data annotated "SEQ1" or "SEQ2" (two replicates per infection for each time-point). "p" denotes treatment with a PI4K inhibitor. The files are organized as follows: - Host_compartment_CHM_final_object.RDS : Seurat object (R statistical environment) with filtered, pre-capture Experiment 2 data - Host_compartment_Final_CHM_counts.tar : MatrixMarket formatted count data, with cell names and gene names included as tab-separated files - PvData_CHM_Final.RDS : Seurat object (R statistical environment) with filtered, parasite-enriched data from Experiments 1 and 2 (cell names as referenced above) - PvData_CHM_Final_counts.csv.gz : comma-separated files of SCT-transformed parasite count data matching the PvData_CHM_Final.RDS object - TableS2_Cell_Metadata.xls : Metadata for all cells reported in this repository
DOI: 10.6084/m9.figshare.19242786
title: Heat transfer control using a thermal analogue of coherent perfect absorption: Datasets

description: This zip file contains the datasets presented in the paper titled "Heat transfer control using a thermal analogue of coherent perfect absorption".
DOI: 10.6084/m9.figshare.19242786.v1
title: Heat transfer control using a thermal analogue of coherent perfect absorption: Datasets

description: This zip file contains the datasets presented in the paper titled "Heat transfer control using a thermal analogue of coherent perfect absorption".
DOI: 10.5281/zenodo.6299232
title: Dynamics Information Mapped In The Evaluation Framework

description: Dynamics Information Mapped In The Evaluation Framework.
DOI: 10.5281/zenodo.6299231
title: Dynamics Information Mapped In The Evaluation Framework

description: Dynamics Information Mapped In The Evaluation Framework.
DOI: 10.5281/zenodo.6299144
title: Iris sibirica SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6299143
title: Iris sibirica SPAdes preassembly

description: .