cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.905qftthq
title: Trait strengthening in mussels

description: Plastic pollution is ubiquitous with increasing recognition of its direct
 effects on species’ fitness.  Little is known, however,
 about its more subtle effects, including the influence of plastic
 pollution on the morphological, functional and behavioural traits of
 organisms that are central to their ability to withstand disturbances.
 Among the least obvious but most pernicious forms of plastic-associated
 pollution are the chemicals that leach from microplastics. Here,
 we investigate how such leachates influence species’ traits by
 assessing functional trait compensation across four species of
 intertidal mussels, through investigations of byssal thread production,
 movement and aggregation behaviour for mussels held in natural seawater or
 seawater contaminated by microplastic leachates. We found no evidence for
 compensation of functional traits, but for each species, microplastic
 leachates reinforced one trait while others remained unaffected. Two
 species (Perna perna and Mytilus galloprovincialis),
 were characterized by a resistance strategy to disturbance; they produced
 more byssal threads in microplastic leachate seawater than in control
 seawater, while motility and aggregation remained essentially unaffected.
 In contrast, the other two species (M.
 edulis and Choromytilus meridionalis), showed a
 resilience strategy to disturbance through reduced motility and
 aggregation in leachate seawater, while byssal thread production remained
 unaffected. These results suggest that the competitive abilities
 of intertidal mussels may be related to their sensitivity to microplastic
 leachates or other chemical disturbance. Importantly, the trait
 strengthening observed will affect the ability of these mussels to form
 spatially patterned beds, with implications for their quality as autogenic
 ecological engineers or foundation species. Thus, our findings
 have implications for the ability of mussel beds to
 tolerate disturbance, and hence for central ecosystem services, such as
 their ability to support biodiversity and enhance secondary and tertiary
 production. The results suggest that an inconspicuous aspect of
 plastic pollution has the potential to influence other communities and
 ecosystems in powerful ways.
DOI: 10.15468/4y6ftp
title: Integrative revision of the Palaearctic owlfly genus Deleproctophylla Lefèbvre (Neuroptera, Myrmeleontidae, Ascalaphinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Badano, Davide, Zheng, Yuchen, Aspöck, Ulrike, Aspöck, Horst, Dobosz, Roland, Funari, Rebecca, Pantaleoni, Roberto Antonio, Ábrahám, Levente, Liu, Xingyue (2026): Integrative revision of the Palaearctic owlfly genus Deleproctophylla Lefèbvre (Neuroptera, Myrmeleontidae, Ascalaphinae). ZooKeys 1267: 197-254, DOI: 10.3897/zookeys.1267.173792AbstractThe ascalaphid genus Deleproctophylla Lefèbvre is a characteristic element of insects from dry, warm grasslands across the Palaearctic, currently comprising five described species distributed in northern Africa, southern Europe, and western Asia. As with other colorful owlfly genera, species of Deleproctophylla have traditionally been differentiated based on wing pattern, a trait prone to high variability and misidentification. The genus currently includes five species: D. australis (Fabricius), D. variegata (Klug), D. dusmeti (Navás), D. gelini Navás, and D. bleusei Kimmins; however, the taxonomic identity of some populations, particularly from Anatolia, has remained uncertain. Even western European species have been affected by taxonomic confusion, as exemplified by D. bleusei, whose presence in southern Spain was only recently detected. A comprehensive revision of all species in the genus demonstrated that the shape of the male ectoproct is the most reliable diagnostic character for species identification. This study also led to the discovery of two new species, D. dandizenor Badano, Zheng, U. Aspöck & Dobosz, sp. nov. from Afghanistan and Pakistan, and D. tengri Zheng, Badano, H. Aspöck & Liu, sp. nov. from Turkmenistan, Kyrgyzstan, and China, significantly expanding the known range of the genus. Morphological findings were further supported by species delimitation analyses of COI sequences, which helped identify specimens with atypical pigmentation patterns and confirmed the validity of both European species and the newly described D. tengri sp. nov.
DOI: 10.5061/dryad.dncjsxkx1
title: Data for: A coordinate-system-independent method for comparing joint rotational mobilities

description: Three-dimensional studies of range of motion currently plot joint poses in
 an "Euler space" whose axes are angles measured in the
 joint's three rotational degrees of freedom. Researchers then compute
 the volume of a pose cloud to measure rotational mobility. However, pairs
 of poses that are equally different from one another in orientation are
 not always plotted equally far apart in Euler space. This distortion
 causes a single joint's mobility to change when measured based on
 different joint coordinate systems and precludes fair comparisons among
 joints. Here we present two alternative spaces inspired by a 16th century
 map projection -- cosine-corrected and sine-corrected Euler spaces -- that
 allow coordinate-system-independent comparisons of joint rotational
 mobilities. When tested with data from a bird hip joint, cosine-corrected
 Euler space demonstrated a ten-fold reduction in variation among
 mobilities measured from three joint coordinate systems. This new
 quantitative framework enables previously intractable, comparative studies
 of articular function.
description: <b>Data Table 1. </b>Density of uniformly distributed
 random poses throughout ZYX Tait-Bryan Euler space, ZYZ proper Euler
 space, cosine-corrected Euler space, and sine-corrected Euler space. 1
 million uniformly random quaternions were generated using MATLAB r_2019a
 and converted to each space. All complete 10x10x10 degree cubes in each
 space were surveyed and the number of poses in each was counted. Averages
 and standard deviations were calculated for each 10-degree strip of cubes
 along the second axis. <br> <b>Data Table
 2.</b> Helmeted guineafowl hip poses measured from JCS1-3.
DOI: 10.5061/dryad.zw3r22868
title: Data from: Cycles of trans‐Arctic dispersal and vicariance, and diversification of the amphi‐boreal marine fauna

description: The amphi‐boreal faunal element comprises closely related species and
 conspecific populations with vicarious distributions in the North Atlantic
 and North Pacific basins. It originated from an initial trans‐Arctic
 dispersal in the Pliocene after the first opening of the Bering Strait,
 and subsequent vicariance through the Pleistocene when the passage through
 the Arctic was severed by glaciations and low sea levels. Opportunities
 for further dispersal have risen at times however, and molecular data now
 expose more complex patterns of inter‐oceanic affinities and dispersal
 histories. For a general view on the trans‐Arctic dynamics and of the
 roles of potential dispersal‐vicariance cycles in generating systematic
 diversity we produced new phylogeographic data sets for amphi‐boreal taxa
 in 21 genera of invertebrates and vertebrates, and combined them with
 similar published data sets of mitochondrial coding gene variation, adding
 up to 89 comparisons involving molluscs, crustaceans, echinoderms,
 polychaetes, fishes and mammals. Only 39% of the cases correspond with a
 simple history of Pliocene divergence; in most taxonomical groups, the
 range of divergence estimates implies connections through the entire
 Pliocene–Pleistocene‐Holocene time frame. Repeated inter‐oceanic exchange
 was inferred for 23 taxa, and the latest connection was usually
 post‐glacial. Such repeated invasions have usually led to secondary
 contacts and occasionally to widespread hybridization between the
 different invasion waves. Late‐ or post‐glacial exchange was inferred in
 50% of the taxa, stressing the importance of the relatively recent
 invasions to the current diversity in the Northern Atlantic. Individual
 taxa also showed complex idiosyncratic patterns and histories, and several
 instances of cryptic speciation were recognized. In contrast to a simple
 inter‐oceanic vicariance scenario underlying amphi‐boreal speciation, the
 data expose complex patterns of reticulation and introgression that
 complicate the interpretation of taxon boundaries in the region.
description: Mega project files with geographical groupings
 Mitochondrial nucleotide sequence data in Mega format, with
 groupings used in the study to calculate genetic distances between
 geographical entities.
DOI: 10.5061/dryad.4b8gtht9g
title: Data from: Deep learning improves taphonomic resolution: high accuracy in differentiating tooth marks made by lions and jaguars

description: Taphonomists have long struggled with identifying carnivore agency in bone
 accumulation and modification. Now that several taphonomic techniques
 allow identifying carnivore modification of bones, a next step involves
 determining carnivore type. This is of utmost importance to determine
 which carnivores were preying on and competing with hominins and what
 types of interaction existed among them during prehistory. Computer vision
 techniques using deep architectures of convolutional neural networks (CNN)
 have enabled significantly higher resolution in the identification of bone
 surface modifications (BSM) than previous methods. Here, we apply these
 techniques to test the hypothesis that different carnivores create
 specific BSM that can enable their identification. To make differentiation
 more challenging, we selected two types of carnivores (lions and jaguars)
 that belong to the same mammal family and have similar dental morphology.
 We hypothesize that if two similar carnivores can be identified by the BSM
 they imprint on bones, then two more distinctive carnivores (e.g. hyenids
 and felids) should be more easily distinguished. The CNN method used here
 shows that tooth scores from both types of felids can be successfully
 classified with an accuracy greater than 82%. The first hypothesis was
 successfully tested. The next step will be to differentiate diverse
 carnivore types involving a wider range of carnivore-made BSM. The present
 study demonstrates that resolution increases when combining two different
 disciplines (taphonomy and artificial intelligence computing) in order to
 test new hypotheses that could not be addressed with traditional
 taphonomic methods.
description: Images captured through binocular microscope at 30 X
DOI: 10.5061/dryad.69p8cz8zw
title: Microbleeds, cerebral hemorrhage, and functional outcome after endovascular thrombectomy

description: Objective—To determine whether the presence, number, and distribution of
 cerebral microbleeds (CMBs) on pretreatment MRI scans are associated with
 an increased risk of intracerebral hemorrhage (ICH) or poor functional
 outcome following endovascular thrombectomy (EVT) for acute
 ischemic stroke (AIS). Methods—We analyzed prospectively
 collected data of consecutive patients treated by EVT for AIS, in a
 comprehensive stroke center where MRI is the first-line pretreatment
 imaging. Neuroradiologists blinded to clinical data rated CMBs on T2*
 sequence using a validated scale. We investigated associations of
 pre-treatment CMB presence, burden (1, 2–4, and ≥5), and presumed
 pathogenesis with ICH and poor 3-month functional outcome (modified Rankin
 score &gt;2). Results—Among 513 patients, 281 (54.8%) had a poor
 outcome and 89 (17.3%) had ≥1 CMBs. A total of 190 (37%) patients
 experienced ICH, in which 66 (12.9%) were symptomatic. CMB burden was
 associated with worse outcome in a univariable analysis (odds ratio [OR],
 1.18; 95% confidence interval [CI], 1.03–1.36 per 1-CMB increase; P=0.02),
 but significance was lost after adjustment for age, sex, baseline stroke
 severity, hypertension, diabetes mellitus, atrial fibrillation, prior
 antithrombotic medication, intravenous thrombolysis, and reperfusion
 status (OR, 1.05; 95% CI, 0.92–1.20 per 1-CMB increase; P=0.50). Results
 remained nonsignificant when taking into account CMB location or presumed
 underlying vasculopathy. CMB presence, burden, location, nor presumed
 underlying vasculopathy was independently associated with ICH.
 Conclusions—Poor outcome or ICH was not associated with CMB presence or
 burden on pre–EVT MRI after adjustment for confounding factors. Excluding
 such patients from reperfusion therapies is unwarranted.
DOI: 10.5061/dryad.6djh9w0zb
title: Sex differences in response to triptans: a systematic review and meta-analysis

description: Objective: To examine the effect of sex on clinical response to triptans
 and to determine whether these differences are related to pharmacokinetics
 of triptans in men and women, we performed a systematic review and
 meta-analysis. Methods: We searched clinical trials distinguishing
 clinical response to or pharmacokinetic parameters of triptans between
 sexes in PubMed, MEDLINE, Cochrane Library, Embase and Web of Science up
 to Dec 12, 2019. Analysis was based on data extracted from published
 reports. Male-to-female pooled risk ratios (RR) were calculated for
 clinical outcomes and pooled ratio of means (RoM) for pharmacokinetic
 outcomes, using random-effects models. Results: Out of &gt;1200
 publications on clinical trials with triptans, 244 were identified with
 sex-related search terms. Only 19 publications presented sex-specific
 results, comprising n=2280 men and n=13899 women. No sex differences were
 revealed for 2-hour headache and pain-free responses, but men had a lower
 risk for headache recurrence (male-to-female RR 0.64, 95%CI:0.55-0.76,
 Q=0.81) and adverse events (RR 0.82, 95%CI:0.72-0.93, Q=4.93). Men had
 lower drug exposure with lower area under the curve (RoM 0.69,
 95%CI:0.60-0.81, Q=18.06) and peak drug concentration (RoM 0.72,
 95%CI:0.64-0.82, Q=8.24) than women. Conclusions: Remarkably few
 publications about sex differences in triptan response are available. The
 limited number of eligible studies show sex differences in adverse event
 frequency, which may be partly due to drug exposure differences. This
 higher drug exposure in women is not reflected in different response
 rates. Despite higher exposure, women have higher headache recurrence
 rates possibly due to longer attack duration related to sex hormonal
 changes.
DOI: 10.5061/dryad.3j9kd51fs
title: Data from: Age-dependent changes in infidelity in Seychelles warblers

description: Extra-pair paternity (EPP) is often linked to male age in socially
 monogamous vertebrates, i.e. older males are more likely to gain EPP and
 less likely to be cuckolded. However, whether this occurs because males
 improve at gaining paternity as they grow older, or because ‘higher
 quality’ males that live longer are preferred by females, has rarely been
 tested, despite being central to our understanding of the evolutionary
 drivers of female infidelity. Moreover, how extra-pair reproduction
 changes with age within females has received even less attention. Using 18
 years of longitudinal data from an individually-marked population of
 Seychelles warblers (Acrocephalus sechellensis), we found considerable
 within-individual changes in extra-pair reproduction in both sexes, i.e.
 an early-life increase and a late-life decline. Furthermore, males were
 cuckolded less as they aged. Our results indicate that in this species
 age-related patterns of extra-pair reproduction are determined by
 within-individual changes with age, rather than differences among
 individuals in longevity.  These results challenge the hypothesis
 – based on longevity reflecting intrinsic quality – that the association
 between male age and EPP is due to females seeking high quality paternal
 genes for offspring. Importantly, EPP accounted for up to half of male
 reproductive success, emphasising the male fitness benefits of this
 reproductive strategy. Finally, the occurrence of post-peak declines in
 extra-pair reproduction provides explicit evidence of senescence in
 infidelity in both males and females.
DOI: 10.5061/dryad.4tmpg4f73
title: Sequences of Pitcairnia flammea

description: Geographic isolation and reduced population sizes can lead to local
 extinction, low efficacy of selection, and decreased speciation. However,
 population differentiation is an essential step of biological
 diversification. In allopatric speciation, geographically isolated
 populations differentiate and persist until the evolution of reproductive
 isolation and ecological divergence complete the speciation process.
 Pitcairnia flammea allow us to study the evolutionary consequences of
 habitat fragmentation on naturally disjoint rock outcrop species from the
 Brazilian Atlantic Rainforest (BAF). Our main results showed low to
 moderate genetic diversity within populations, and deep population
 structuring caused by limited gene flow, low connectivity, genetic drift
 and inbreeding of long-term isolation and persistence of rock outcrops
 populations throughout Quaternary climatic oscillations. Bayesian
 phylogenetic and model-based clustering analyses found no clear northern
 and southern phylogeographic structure commonly reported for many BAF
 organisms. Although, we found two main lineages diverging by approximately
 2 Mya during the early Pleistocene, species delimitation analysis assigned
 most of the populations as independent evolving entities, suggesting an
 important role of disjoint rock outcrops in promoting high endemism in
 this rich biome. Lastly, we detected limited gene flow in sympatric
 populations although some hybridization and introgression were observed,
 suggesting a continuous of speciation processes in this species complex.
 Our data not only inform us about the extensive differentiation and
 limited gene flow found among Pitcairnia flammea species complex, they
 also contain information about the mechanisms that shape the genetic
 architecture of small and fragmented populations of isolated rock outcrop
 of recently radiated plants.  
description: <b id="docs-internal-guid-f15f871d-7fff-2674-476a-a0aa8846566c">Two plastid DNA regions (rpl32-trnL and rps16-trnK) were amplified and sequenced for a subset of 176 individual from the populations sampled, using the primers described by Shaw et al. (2007). All polymerase chain reaction (PCR) amplifications were carried out in a total volume of 20 μL containing 10 ng DNA template, 1× GoTaq buffer, 2.5 mMMgCl2, 0.25 mMdNTP mix, 5 pmol forward and reverse primers and 0.5 U GoTaq DNA polymerase (Promega) and run using the following parameters: initial denaturation at 94°C for 3 min, followed by 35 cycles of 94°C for 1 min, 54°C (rpl32-trnL) or 58°C (rps16-trnK) for 1 min, and 72°C for 1 min, and a final extension of 10 min at 72°C. PCR products were sent for both forward and reverse sequencing to Macrogen (Seul, Korea). </b>
DOI: 10.15468/dl.8uyz28
title: Occurrence Download

description: A dataset containing 129228 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Chordata [GBIF Backbone Taxonomy], Plantae [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL.15.40_2)"
 ]
 }
 ]
}

 The dataset includes 129228 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002403-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drg8uk
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astrodaucus littoralis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007691-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hff2qz
title: Occurrence Download

description: A dataset containing 1915 records in GBIF matching the query:
SELECT
 '190' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 4.045127286108716
 AND decimalLatitude &lt;= 8.098015256935714
 AND decimalLongitude &gt;= -10.039662929106857
 AND decimalLongitude &lt;= -4.996569484949666
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1915 records were derived from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007675-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvn2yw
title: Occurrence Download

description: A dataset containing 575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Venezuela (Bolivarian Republic of)",
 "OccurrenceStatus is Present",
 "TaxonKey is Erebidae"
 ]
}

 The dataset includes 575 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007692-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrcar7
title: Occurrence Download

description: A dataset containing 881 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((117.945 6.032138, 117.874349 6.026567, 117.805442 6.009992, 117.739979 5.982822, 117.679575 5.945727, 117.625719 5.899623, 117.579738 5.845646, 117.542763 5.785128, 117.515703 5.719561, 117.499221 5.650561, 117.493718 5.579827, 117.499327 5.509101, 117.515906 5.440125, 117.543043 5.374595, 117.580067 5.314125, 117.626065 5.260201, 117.679904 5.214149, 117.740259 5.177101, 117.805645 5.149968, 117.874456 5.133417, 117.945 5.127855, 118.015544 5.133417, 118.084355 5.149968, 118.149741 5.177101, 118.210096 5.214149, 118.263935 5.260201, 118.309933 5.314125, 118.346957 5.374595, 118.374094 5.440125, 118.390673 5.509101, 118.396282 5.579827, 118.390779 5.650561, 118.374297 5.719561, 118.347237 5.785128, 118.310262 5.845646, 118.264281 5.899623, 118.210425 5.945727, 118.150021 5.982822, 118.084558 6.009992, 118.015651 6.026567, 117.945 6.032138))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 881 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007693-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.