cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3753914
title: Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer

description: This repository contains clinical data of LUAD samples (phnotype.csv; TCGA-LUAD.survival.tsv), microRNA targets data of RNAs-RNAs relationships (mirna-lnc.txt; mirna-mrna.csv), and RNAs expression data of LUAD (ENSG_ID.txt; ENSG_ID_LNC.txt; idMap.data; TCGA-LUAD.htseq_fpkm.tsv; TCGA-LUAD.mirna.tsv) used in <em>Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer</em>.
DOI: 10.5281/zenodo.10112524
title: Coral Records from the South China Sea Echo Unexpected High Latitude Warm Winters during the Little Ice Age
DOI: 10.5281/zenodo.4013256
title: DATASET OF "Impact of short-acting vs. standard anaesthetic agents on obstructive sleep apnoea: a randomised, controlled, triple-blind trial"

description: Sleep apnoea is associated with negative outcomes following general anaesthesia. Current recommendations suggest using short-acting anaesthetic agents in preference to standard agents to reduce this risk, but there is currently no evidence to support this. This randomised controlled triple-blind trial tested the hypothesis that a combination of short-acting agents (desflurane-remifentanil) would reduce the postoperative impact of general anaesthesia on sleep apnoea severity compared with standard agents (sevoflurane-fentanyl). Sixty patients undergoing hip arthroplasty under general anaesthesia were randomised to anaesthesia with desflurane-remifentanil or sevoflurane-fentanyl. Respiratory polygraphy was performed before surgery and on the first and third postoperative nights. The primary outcome was the supine apnoea-hypopnoea index on the first postoperative night. Secondary outcomes were the supine apnoea-hypopnoea index on the third postoperative night, and the oxygen desaturation index on the first and third postoperative nights. Additional outcomes included intravenous morphine equivalent consumption and pain scores on postoperative days 1, 2 and 3. Pre-operative sleep study data were similar between groups. Mean (95%CI) values for the supine apnoea-hypopnoea index on the first postoperative night were 18.9 (12.7–25.0) and 21.4 (14.2–28.7) events.h<sup>-1</sup>, respectively, in the short-acting and standard anaesthesia groups (p=0.64). Corresponding values on the third postoperative night were 28.1 (15.8–40.3) and 38.0 (18.3–57.6) events.h<sup>-1</sup> (p=0.34). Secondary sleep- and pain-related outcomes were generally similar in the two groups. In conclusion, short-acting anaesthetic agents did not reduce the impact of general anaesthesia on sleep apnoea severity compared with standard agents. These data should prompt an update of current recommendations.
DOI: 10.5281/zenodo.4559813
title: ADEX: Probabilistic trend detection in different levels of arousal

description: Experiment 1: 19 participants (15 female; age range 18-40) took part in the study. Inclusion criteria were set to individuals aged 18-40, with normal binaural hearing, no visual impairment and no history of cardiovascular, neurological or psychiatric disease. To increase the probability that participants would fall asleep, only easy sleepers, as assessed by the Epworth Sleepiness Scale (ESS; Johns, 1991), were selected for this study. Recruited participants were considered healthy with relatively high ESS scores but not corresponding to a condition of pathological sleep such as hypersomnia. Participants were recruited via the Cambridge Psychology SONA system. They gave written informed consent to participate in the study and received a remuneration of £10 per hour (i.e., approximately £30 per participant). The Cambridge Psychology Ethics Committee approved the study (CPREC 2014.25). Experiment 2: 10 participants (11 female; age range 18-40) took part in the study. Inclusion criteria, recruitment processes and remuneration were similar to Experiment 1. All participants gave written informed consent to participate in the experiment. The Cambridge Psychology Ethics Committee approved the study (CPREC 2014.25). Experiment 3: 40 participants (6 female; age range 19-39) took part in the study. Inclusion criteria were set to individuals aged 18-40 who exercise at least 8 hours of cycling or triathlon per week, with normal binaural hearing, no visual impairment and no history of cardiovascular, neurological or psychiatric disease. Participants were recruited from the University of Granada, Spain. Subjects gave written consent to participate in the study and received a remuneration of 10€ per hour (i.e., 30€ per participant). Note that well-trained cyclists were selected because they are used to maintaining the pedalling cadence at high intensity during long periods of time. Furthermore, they are able to keep a fixed posture over time, which notably reduce movement artefacts. The University of Granada Ethics Committee approved the study (287/CEIH/2017).
DOI: 10.5281/zenodo.4589114
title: Twitter Dataset: tweets with both hashtags and links

description: A collection of records extracted from tweets for the month of November 2012 containing both #hashtags and URLs as part of the tweet. Source: Sampled public tweets from Twitter streaming API. Date range: November 2012. File size: 27.8M tweets; 3.6GB uncompressed. Please cite: Karissa McKelvey and Filippo Menczer. Truthy: Enabling the Study of Online Social Networks. In Proc. 16th ACM Conference on Computer Supported Cooperative Work and Social Computing Companion (CSCW), 2013.
DOI: 10.5281/zenodo.5911184
title: The station-based error information of monthly snow depth, precipitation and air temperature for CMIP6 models in mainland China

description: This dataset contains the data of monthly snow depth in terms of RMSD (cm), spatial correlation (R<sub>s</sub>), temporal correlation (R<sub>t</sub>), consistency index (CI), and Hotspot score (H-score) of the 1415 weather stations (only 342 stations with longterm observations were available for R<sub>t</sub>, CI and H-score) in China used for evaluating the snow depth simulated or estimated from 31 CMIP6 models, MERRA2 reanalysis and a remote sensing snow depth dataset (Che). It also includes the data of errors and accumulated errors of monthly precipitation (mm) and air temperature (℃) from the 342 stations of all the 31 CMIP6 models, which can be used for constructing the regression models for analyzing error sources of snow depth simulations. The NA values of monthly precipitation and temperature indicate that the effects of accumulated errors were ignored for the corresponding month and station.
DOI: 10.5281/zenodo.5566674
title: moFluMemB - Dataset : scRNA-seq from Lymph node, Spleen and Lung

description: Title

Viral infection engenders bona fide and bystander subsets of lung-resident memory B cells through a permissive mechanismAuthorsClaude Gregoire,1 Lionel Spinelli,1 Sergio Villazala-Merino,1 Laurine Gil,1 María Pía Holgado,1 Myriam Moussa,1 Chuang Dong,1 Ana Zarubica,2 Mathieu Fallet,1 Jean-Marc Navarro,1 Bernard Malissen,1,2 Pierre Milpied,1,* and Mauro Gaya1,*Affiliations1 Centre d'Immunologie de Marseille-Luminy (CIML), Aix Marseille Université, INSERM, CNRS, Marseille, France2  Centre d'Immunophénomique (CIPHE), Aix Marseille Université, INSERM, CNRS, Marseille, France* Correspondence: milpied@ciml.univ-mrs.fr (P.M.), gaya@ciml.univ-mrs.fr (M.G.)SummaryLung-resident memory B cells (MBCs) provide localized protection against reinfection in the respiratory airways. Currently, the biology of these cells remains largely unexplored. Here, we combined influenza and SARS-CoV-2 infection with fluorescent-reporter mice to identify MBCs regardless of antigen specificity.  We found that two main transcriptionally distinct subsets of MBCs colonized the lung peribronchial niche after infection. These subsets arose from different progenitors and were both class-switched, somatically mutated and intrinsically biased in their differentiation fate towards plasma cells. Combined analysis of antigen-specificity and B cell receptor repertoire segregated these subsets into “bona fide” virus-specific MBCs and “bystander” MBCs with no apparent specificity for eliciting viruses and generated through an alternative permissive mechanism. Thus, diverse transcriptional programs in MBCs are not linked to specific effector fates but rather to divergent strategies of the immune system to simultaneously provide rapid protection from reinfection while diversifying the initial B cell repertoire.

Data



custom_201216_m_moFluMemB_processedData.tar.gz :   pre-processed data of FB5P-seq protocol (Attaf et al., 2020) on memory B cells sorted from single-cell suspensions of lungs with enzymatic digestion of lung tissue at 37°C, with index sorting information for a panel of antibodies identifying subsets of memory B cells.

moFluMemB_DockerImages.tar.gz: Docker images used by the analysis

moFluMemB_SingularityImages.tar.gz: Singularity images used by the analysis (conversion of the docker images) 


See the three other Zenodo deposit for the rest of the data:

10.5281/zenodo.5565863

10.5281/zenodo.5564624

10.5281/zenodo.10559312
DOI: 10.5281/zenodo.5500805
title: China's historical 1km resolution eco-environmental quality data (CHEQ)

description: The China's High-resolution Eco-Environmental Quality (CHEQ) dataset provides 1-km historical eco-environmental quality (EEQ) during years 2001-2019. This dataset archived in TIFF format was jointly developed by Beijing Normal University, Southern University of Science and Technology and Peking University based on multi-source remote sensing data. The dataset covers the entire land of China with a yearly temporal resolution. The existing validation results show that the CHEQ dataset was highly consistent with the environmental index (EI) provided by the Ministry of Ecology and Environment of China. The CHEQ fills the research gap in the field of EEQ monitoring in China.<br>
description: 文献引用参考格式: Xu D, Yang F, Yu L, etal. Quantization of the coupling mechanism between eco-environmental quality and urbanization from multisource remote sensing data[J]. Journal of Cleaner Production, 2021: 128948. https://doi.org/10.1016/j.jclepro.2021.128948
DOI: 10.5281/zenodo.5630326
title: Surface surface wind speed and its different grades over China during 1961-2020 based on a high-resolution observation dataset CN05.1

description: The daily 10-m wind speed observation dataset CN05.1, which covers the period from 1961 to 2020, with horizontal resolution of 0.25° × 0.25° (latitude × longitude). This dataset was developed by Jia Wu from National Climate Center, China Meteorological Administration. References: Jia Wu, Xue-Jie Gao. A grided daily observation dataset over China region and comparison with the other datasets. <em>Chinese J. Geophys. </em>(in Chinese), 2013, 56(4): 1102-1111, doi: 10.6038/cjg20130406.
DOI: 10.5281/zenodo.4646828
title: imizikova/Looking-at-the-Developing-Lung-in-Single-cell-Resolution: Table 1. Cell types and their markers during early murine lung development, as identified in selected scRNA-seq data sets

description: Table 1. Cell types and their markers during early and late murine lung development, as identified in selected scRNA-seq datasets.
DOI: 10.5281/zenodo.5706578
title: LoveDA: A Remote Sensing Land-Cover Dataset for Domain Adaptive Semantic Segmentation

description: The benchmark code is available at: https://github.com/Junjue-Wang/LoveDA <strong>Highlights: </strong> 5987 high spatial resolution (0.3 m) remote sensing images from Nanjing, Changzhou, and Wuhan Focus on different geographical environments between Urban and Rural Advance both semantic segmentation and domain adaptation tasks Three considerable challenges: multi-scale objects, complex background samples, and inconsistent class distributions <strong>Reference:</strong> <pre><code>@inproceedings{wang2021loveda, title={Love{DA}: A Remote Sensing Land-Cover Dataset for Domain Adaptive Semantic Segmentation}, author={Junjue Wang and Zhuo Zheng and Ailong Ma and Xiaoyan Lu and Yanfei Zhong}, booktitle={Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks}, editor = {J. Vanschoren and S. Yeung}, year={2021}, volume = {1}, pages = {}, url={https://datasets-benchmarks proceedings.neurips.cc/paper/2021/file/4e732ced3463d06de0ca9a15b6153677-Paper-round2.pdf} }</code></pre> <strong>License:</strong> The owners of the data and of the copyright on the data are RSIDEA, Wuhan University. Use of the Google Earth images must respect the "Google Earth" terms of use. All images and their associated annotations in LoveDA can be used for academic purposes only, <strong>but any commercial use is prohibited. (CC BY-NC-SA 4.0)</strong>
description: {"references": ["https://arxiv.org/abs/2110.08733"]}
DOI: 10.5281/zenodo.4771239
title: Projections of Mekong River discharge, and sea level rise along the Mekong Delta coast

description: Projections of Sea Level Rise (SLR) under RCP 4.5 and RCP 8.5 (AR5) along the Mekong Coast, Published<sup>1</sup> by the Ministry of Natural Resources and Environment (MONRE), Hanoi, Vietnam. Projections of Mekong River discharge during the <strong>dry season</strong> under RCP 4.5 and RCP 8.5 at Kratie, Cambodia. The data contains the cumulative, minimum and maximum dry season (January-1<sup>st</sup> to April-30<sup>th</sup>) discharge from 5 different climate models. PCR-GLOBWB<sup>2</sup> was run at 5 arc-min spatial resolution and forced with the data based on output from five ISIMIP CMIP5 global climate models (HadGEM2-ES, GFDL-ESM2, IPSL-CM5A-LR, MIROC-ESM-CHEM, NorESM1-M). 1. Ministry of Natural Resources and Environment (MONRE), V. <em>Climate change and sea level rise scenarios for Vietnam, Ministry of Natural Resources and Environment</em>. (2016). 2. Sutanudjaja, E. H. <em>et al.</em> PCR-GLOBWB 2: a 5 arcmin global hydrological and water resources model. <em>Geosci. Model Dev.</em> <strong>11</strong>, 2429–2453 (2018).
description: {"references": ["Sutanudjaja et al. (2018)", "Ministry of Natural Resources and Environment (2016)"]}
DOI: 10.5281/zenodo.4382488
title: Fine fuel biomass in grasslands and shrublands of the Intermountain West

description: The Great Basin Coordination Center partners with Bureau of Land Management field offices in the Intermountain West to monitor fine fuel loading to make firefighting resource allocation decisions in the early spring. Fine fuel loads, a measurement of the small, herbaceous, and flammable biomass in a system can vary greatly inter-annually in grass and shrub dominated systems. These data are a compilation of those measurements from 11 district offices spanning from 1996-2020 years over 164 sites and the methods used to collect those measurements, which varies between field offices.
description: The methods used to collect these data (fine_fuels.csv) varies by the 'collecting_field_office' field. Differing methodologies of 'collecting_field_office' are included in the "field_office.csv" with further explanation of both files included in the Readme file. Most sites were not monitored for the entirety of 1996 through 2020.
DOI: 10.15468/dl.td4z9w
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys griseus Döderlein, 1883",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010926-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/ycaz-tf23
title: Non-linear Curve fitting to predict Von Misses Stress as a function of pore shape, size, location, and CTE parameters

description: The brazed joint assemblies are used for various critical applications including aerospace. So, the joint assembly should be optimized in terms of structure, materials, and porosity. A simulation study using Finite Element Method to optimize ceramic composite joint assembly is performed. The analysis concludes that pores do not always deteriorate joint performance. Variation of VMS with pore shape, size, location and CTE of material is estimated. An analytical non-linear equation to estimate the VMS value for any set of pore shape, size, location, and CTE parameter is proposed. The entropy is maximized and the coefficients of the parameters are estimated corresponding to maximum entropy. The fitted non-linear equations predicts the thermal stress of the joint assembly structure for a given material combinations and containing different shape and sized pores at different locations in the filler material of the assembly.
DOI: 10.15468/dl.dbnhzz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys similis Yamanoue & Matsuura, 2004",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010928-241126133413365/datasets/export for details.
DOI: 10.15468/dl.4x9j37
title: Occurrence Download

description: A dataset containing 17683 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cercis siliquastrum L.)"
 ]
}

 The dataset includes 17683 records from 378 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010930-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sadmb2
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudorca crassidens (Owen, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 167 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010931-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a76m2t
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Kudoacanthus albonervosus Hosok.)"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010933-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yan6ek
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cercis yunnanensis Hu & W.C.Cheng)"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010932-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ez2d4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phocaena crassidens Owen, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010935-241126133413365/datasets/export for details.
DOI: 10.15468/dl.ge94v6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Lalldhwojia acronemifolia (H.Wolff) M.F.Watson ex D.G.Long)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010936-241126133413365/datasets/export for details.
DOI: 10.15468/dl.hrwhaj
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedychium aureum C.B.Clarke & H.Mann ex Baker"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4uq4r
title: Occurrence Download

description: A dataset containing 48869 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Avena fatua L.",
 {
 "or" : [
 "Year 1961-1976",
 "Year 2007-2024"
 ]
 }
 ]
}

 The dataset includes 48869 records from 1284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010927-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28509464
title: BazaButyrate.sav

description: Basis of NCT06759363 study protocol
DOI: 10.15468/dl.pak49g
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Brachionidium meridense Garay"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000123-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/b5104dea1b09a4aac00b6b3995a30233
title: Monitoring juvenile Chinook salmon outmigration using rotary screw traps on Feather River

description: California Department of Water Resources (DWR) currently operates
 multiple eight-foot rotary screw traps (RSTs) in both the Low Flow
 Channel (LFC) and High Flow Channel (HFC) of the upper 21.5 river
 miles of the Lower Feather River. The LFC extends from the Fish
 Barrier Dam at river mile (RM) 67.2 to the Thermalito Outlet (RM
 59). The HFC extends from the Thermalito Outlet to the confluence
 with the Sacramento River. This survey has been ongoing since 1997
 with the objective of documenting general salmonid emigration
 attributes, such as timing, abundance and composition of salmon and
 investigating the influence of environmental factors thought to
 initiate emigration, such as flow, turbidity and water temperature.
 Data from this monitoring will also be used to inform the
 development of a juvenile production estimate (JPE) for spring-run
 Chinook salmon in the Sacramento River Watershed as required by
 Incidental Take Permit No. 2081-2019-006-00 issued by CA Department
 of Fish and Wildlife (CDFW) to DWR for the long-term operation of
 the State Water Project. Data within the current year’s monitoring
 season are considered provisional.