cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18376012
title: Protein Models: The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A

description: Models generated for the interaction between N-Myc with Aurora kinase A with massive sampling using AFsample (Wallner, 2022)

 

File descriptions

The data is compressed with zstandard to extract an archive use the following command:



tar --use-compress-program=unzstd -xvf aurora_nmyc_selected_models.tar.zst


aurora_nmyc_selected_models.tar.zst - Contains selected models (.pdb) with Chi2<1.1 that are also highlighted in the paper, extracts to output-notemplate-dropout-selected/aurora_nmyc/ and output-notemplate-dropout-selected/aurora_nmyc1-69/ for n-myc 1-100 and 1-69, respectively.

all_models_scores.tar.zst - Contains all generated models (.pdb), extracts to the folder output-notemplate-dropout/aurora_nmyc/ and output-notemplate-dropout/aurora_nmyc1-69/ for nmyc 1-100 and 1-69, respectively.
DOI: 10.5517/ccdc.csd.cc2ps8d5
title: CCDC 2495977: Experimental Crystal Structure Determination

description: Related Article: Karsten Paul Luedtke|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ps8f6
title: CCDC 2495978: Experimental Crystal Structure Determination

description: Related Article: Karsten Paul Luedtke|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ps8g7
title: CCDC 2495979: Experimental Crystal Structure Determination

description: Related Article: Karsten Paul Luedtke|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24l20v
title: CCDC 1983566: Experimental Crystal Structure Determination

description: Related Article: Priyanka R Sarker, Nikhil C Bhoumik, Jagodish C Sarker|2022|CSD Communication|||
description: Related Article: Priyanka R. Sarker, Shahana Akter, Md. Nazmul Huda, Md. Nayem Hossen, Urbana Kawsar Mitali, Joyanta K. Saha, Vladimir N. Nesterov, Graeme Hogarth, Shariff E. Kabir, Jagodish C. Sarker|2026|J.Mol.Struct.|1359|145391|doi:10.1016/j.molstruc.2026.145391
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qvybw
title: CCDC 2528339: Experimental Crystal Structure Determination

description: Related Article: Shubham Bisht|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qvycx
title: CCDC 2528340: Experimental Crystal Structure Determination

description: Related Article: Shubham Bisht|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qvydy
title: CCDC 2528341: Experimental Crystal Structure Determination

description: Related Article: Xiao Mu, Rudy-Samba Bayakimissa, Koen Robeyns, Nikolay Tumanov, Johan Wouters, Michael L. Singleton|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qvyfz
title: CCDC 2528342: Experimental Crystal Structure Determination

description: Related Article: Shubham Bisht|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qvyg0
title: CCDC 2528343: Experimental Crystal Structure Determination

description: Related Article: Shubham Bisht|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.dubx78
title: Occurrence Download

description: A dataset containing 11034 records in GBIF matching the query:
SELECT
 '10' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= -37.42857426825602
 AND decimalLatitude &lt;= -33.06103686093294
 AND decimalLongitude &gt;= -74.83335833227108
 AND decimalLongitude &lt;= -66.79339852040943
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateUncertaintyInMeters IS NOT NULL
 AND coordinateUncertaintyInMeters &gt; 0
 AND coordinateUncertaintyInMeters &lt;= 200
 GROUP BY fish_cell, cell

 The dataset's 11034 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011868-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5880/gfz.hdbg.2026.001
title: Real-time monitoring of CO2-rich mineral waters and mofettes in the Eifel volcanic fields

description: Real-time fluid monitoring began in late 2020 in the East Eifel and currently includes 12 sites, such as abandoned CO₂ wells, mofettes, CO₂-rich springs, CO₂-rich soil, and a cold-water geyser in the West Eifel. For the first time, fluid data are being recorded continuously with a high temporal resolution of up to 1 Hz. Depending on the local site conditions, the following parameters are being monitored: instrument temperature and battery voltage; barometric pressure and temperature; meteorological parameters; water level, wellhead pressure, water temperature; radon in free gas phase; CO2 concentration and CO2 flux in soil gas. Data are transmitted hourly via FTP to GFZ. While we generally observe small seasonal variations, short-term transients related to heavy rain or local and distant earthquakes are indicated. Over longer periods, we observe trend changes in helium isotope ratios, radon concentration, and water temperature. For example, two sites exhibited significant helium isotope changes from 2021 to 2025, which appear to correlate with earthquake swarms at depth. These examples demonstrate the necessity of jointly interpreting meteorological, hydrogeological, geophysical, and geodetic data.
description: Based on 40 years of fluid monitoring experience, only those parameters were chosen for continuous monitoring, which are nearly maintenance-free. All sensors were calibrated before installation using calibrated reference probes. The GFZ-made radon detector was calibrated using two different commercial radon detectors (g.b.h. and AlphaGUARD). On-site, analog manometers (installed at the wellhead next to the pressure transducer) readings are regularly compared to the transducer values during station visits; water level sensors are controlled by manual water level measurements with an electric contact gauge; logged water temperature and conductivity values are compared to manual readings with handheld devices (P655 and HACH HD30) from time to time. The CO2 flux measuring system is calibrated with air approximately every three months during each visit. However, to check the data, the air composition is measured after each sample measurement, allowing direct verification of the currently measured values.
DOI: 10.15468/dl.y3myp2
title: Occurrence Download

description: A dataset containing 1188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prioneris thestylis"
 ]
}

 The dataset includes 1188 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011898-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31252651
title: Analysis Table of Gut and Oral Microbiota Data in Kidney Disease Samples

description: A structured summary of gut and oral microbiome profiling data in a nephrology cohort, highlighting key dysbiosis signatures and cross-site ecological associations relevant to kidney disease pathogenesis.
DOI: 10.6084/m9.figshare.31252651.v2
title: Analysis Table of Gut and Oral Microbiota Data in Kidney Disease Samples

description: A structured summary of gut and oral microbiome profiling data in a nephrology cohort, highlighting key dysbiosis signatures and cross-site ecological associations relevant to kidney disease pathogenesis.
DOI: 10.6084/m9.figshare.31252651.v1
title: Analysis Table of Gut and Oral Microbiota Data in Kidney Disease SamplesAnalysis Table of Gut and Oral Microbiota Data in Kidney Disease Samples

description: A structured summary of gut and oral microbiome profiling data in a nephrology cohort, highlighting key dysbiosis signatures and cross-site ecological associations relevant to kidney disease pathogenesis.
DOI: 10.15468/dl.mzb4nf
title: Occurrence Download

description: A dataset listing the 14 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaires Aéro Biodiversité - LFHM - Megève-Inventaires Aéro Biodiversité - LFHM - Point d'EPOC 4"
 ]
}

 The dataset's 14 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011880-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5nk36j9d
title: MassIVE MSV000100712 - GNPS - Probe-derived metabolomics for S1P-LNK derivatives
title: Raw LC-MS/MS Thermo RAW files for probe-enriched S1P-LNK derivative discovery (probe, DMSO control, resin blank). Deposited for manuscript review.
DOI: 10.15468/dl.5qukm4
title: Occurrence Download

description: A dataset containing 150193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 150193 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011877-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3rut4d
title: Parastenomyia New Genus (Diptera: Ulidiidae: Lipsanini) From Costa Rica, Ecuador, And Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kameneva, Elena P., Korneyev, Severyn V., Korneyev, Valery A. (2025): Parastenomyia New Genus (Diptera: Ulidiidae: Lipsanini) From Costa Rica, Ecuador, And Peru. Proceedings of the Entomological Society of Washington 127 (3): 485-500, DOI: 10.4289/0013-8797.127.3.485Abstract.— Parastenomyia new genus of Neotropical picture-winged flies (Ulidiidae) is established to include P. waynei, new species (type locality, Costa Rica), P. peruviana, new species (Peru), P. ecuadoriana, new species (Ecuador), and P. willii, new species (Peru). A key to related genera and species of the genus, diagnoses, descriptions, and color illustrations are provided. The position and possible relationships of the genus in the tribe Lipsanini are discussed.
DOI: 10.5281/zenodo.18243479
title: Dataset for 'Generating Cyclic Conformers with Flow Matching in Cremer-Pople Coordinates'

description: Content of this entry

This entry contains the dataset for reproduction of the paper Generating Cyclic Conformers with Flow Matching in Cremer-Pople Coordinates.The content is divided into multiple folders:



`comparison_algorithms`: samples for GeoDiff and MCF

`data`: preprocessed dataset with Cremer–Pople coordinates, bond length and angle dictionaries and prepared data splits

`runs`: executed runs for PuckerFlows (including model checkpoint and generated conformers) and RDKit


For a more comprehensive overview, refer to the README in the root directory.

Acknowledgements

We thank Vignesh Ram Somnath, Andreas Krause and Martin Diehl for constructive discussions. This publication was created as part of NCCR Catalysis (grant numbers 180544 and 225147), a National Centre of Competence in Research funded by the Swiss National Science Foundation. A. Hartgers was supported by an NCCR Catalysis Young Talents Fellowship.
DOI: 10.5281/zenodo.18243480
title: Dataset for 'Generating Cyclic Conformers with Flow Matching in Cremer-Pople Coordinates'

description: Content of this entry

This entry contains the dataset for reproduction of the paper Generating Cyclic Conformers with Flow Matching in Cremer-Pople Coordinates.The content is divided into multiple folders:



`comparison_algorithms`: samples for GeoDiff and MCF

`data`: preprocessed dataset with Cremer–Pople coordinates, bond length and angle dictionaries and prepared data splits

`runs`: executed runs for PuckerFlows (including model checkpoint and generated conformers) and RDKit


For a more comprehensive overview, refer to the README in the root directory.

Acknowledgements

We thank Vignesh Ram Somnath, Andreas Krause and Martin Diehl for constructive discussions. This publication was created as part of NCCR Catalysis (grant numbers 180544 and 225147), a National Centre of Competence in Research funded by the Swiss National Science Foundation. A. Hartgers was supported by an NCCR Catalysis Young Talents Fellowship.
DOI: 10.15468/dl.65pxnw
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telinga oculus"
 ]
}

 The dataset includes 99 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011899-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvssr8
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Plecturocebus discolor, Callicebus discolor)"
 ]
}

 The dataset includes 441 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011900-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b798mr
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Continent is Oceania",
 "IucnRedListCategory is LC",
 "License is CC-BY 4.0",
 "TaxonKey is Mammalia",
 "Year 2023-2026"
 ]
}

 The dataset includes 814 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011901-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh96kc
title: Occurrence Download

description: A dataset containing 2335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vaccinium fuscatum, Vaccinium arkansanum, Vaccinium atrococcum)",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "Country is one of (Canada, United States of America)"
 ]
}

 The dataset includes 2335 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011902-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18484582
title: ALEKSANDR FAYNBERGNING "VARAQ" SHE'RI TAHLILI

description: Ushbu maqola Aleksandr Faynbergning “Varaq” she’rini chuqur tahlil qiladi. Ishda she’rning mavzusi, asosiy motivlari, metaforalari, tabiat va ruhiy olam bilan bog‘liqligi ko‘rib chiqilgan. Maqola shoir ijodining abadiyligi, avlodlarga merosi va she’riyatning hissiy quvvatini ochib beradi.
DOI: 10.5281/zenodo.18484583
title: ALEKSANDR FAYNBERGNING "VARAQ" SHE'RI TAHLILI

description: Ushbu maqola Aleksandr Faynbergning “Varaq” she’rini chuqur tahlil qiladi. Ishda she’rning mavzusi, asosiy motivlari, metaforalari, tabiat va ruhiy olam bilan bog‘liqligi ko‘rib chiqilgan. Maqola shoir ijodining abadiyligi, avlodlarga merosi va she’riyatning hissiy quvvatini ochib beradi.
DOI: 10.58132/5waxh9
title: Dokumentacja fotograficzna wystawy stałej i czasowej w Łotewskim Muzeum Wojny w Rydze

description: Zbiór zawiera wybór z dokumentacji fotograficznej wystawy stałej i czasowej Łotewskiego Muzeum Wojny w Rydze z dnia 7.11.2025. Dokumentacja była przeprowadzona w ramach grantu NCN Miniatura „Wojna w muzeach: ekspozycje muzealne po agresji Rosji na Ukrainę” (2024/08/X/HS3/01588). W badaniu analizie poddano kwestie, czy i jak narracje dotyczące historii narodowej i wojny prezentowane w muzeum ulegają ewolucji po 24 lutego 2022 – rozpoczęciu pełnoskalowej agresji rosyjskiej na Ukrainę? W jaki sposób przedstawiany jest stan wojny (i pokoju) w narodowej historii? W jaki sposób przedstawiane były i są Rosja i ZSRR, ich rola w historii Łotwy, Europy i świata? Czy i jak włącza się w dotychczasową narrację muzealną upamiętnienia wojny w Ukrainie i jej ofiar? Wydaje się, że w sytuacji zagrożenia w historii szukać będzie się dowodów na istnienie wspólnoty, która może obronić przed wrogiem. Warto zastanowić się, gdzie się jej poszukuje. Czy kreowana jest wizja autarkicznej wspólnoty narodowej gotowej do walki? Być może powstaje wizja szerszej społeczności, która będzie uczestniczyć w ewentualnej walce? Czy można zauważyć podkreślanie przynależności do krajów UE lub NATO? Być może kreowana jest regionalna narracja, podkreślająca wspólnotę badanych państw, odwołująca się do wspólnej historii zależności i oporu? Odpowiedzi na główne pytania badawcze poszukiwano poprzez analizę ekspozycji i pozawystawienniczej działalności muzeum.Badania przeprowadzono w następujących placówkach:Polska: Muzeum Wojska Polskiego w Warszawie oraz Muzeum Pamięci Sybiru w BiałymstokuŁotwa: Muzeum Okupacji Łotwy w Rydze oraz Łotewskie Muzeum Wojny w RydzeEstonia: Vabamu Muzeum Okupacji i Wolności w Tallinie oraz Estońskie Muzeum Wojny w ViimsiFinlandia: Muzeum Wojny w Helsinkach oraz Muisti Centre of War and Peace w MikkeleMołdawia: Muzeum Historii Militarnej w Kiszyniowie oraz Narodowe Muzeum Historii Mołdawii w Kiszyniowie.
DOI: 10.5281/zenodo.18475404
title: Data for: Dog Brain Representations of Human Facial Expressions: Encoding Happiness and Differentiating Specific Negative Expressions

description: Abstract

Dogs can distinguish human facial expressions, particularly happiness; yet brain processes remain unclear. Using fMRI, we conducted two experiments in awake pet dogs. In Experiment 1 (n = 8), happy faces elicited a stronger response than neutral faces in a right temporal cluster extending to the caudate nucleus, including the rostral Sylvian gyrus. In Experiment 2 (n = 12), dogs viewed faces expressing happiness, anger, fear, or sadness. Using the Experiment 1 cluster as a region of interest, a machine-learning classifier distinguished happiness from each negative facial expression, but not between negative pairs, suggesting this region is specific for happy faces. Whole-brain representational similarity analyses revealed activity patterns differentiating angry vs. fearful faces (right mid ectosylvian and left splenial gyri) and sad vs. fearful faces (right rostral suprasylvian gyrus) but not angry vs. sad faces. This provides the first evidence that dog brains can distinguish between two negative facial expressions. 

This dataset containsExperiment 1



Raw data 40 functional runs 

GLM results


Experiment  2



Raw data 96 functional runs 

RSA searchlight group maps for Anger vs Fear and Sadness vs Fear

Individual similarity maps for Anger vs Fear and Sadness vs Fear and Sadness vs Anger
DOI: 10.5281/zenodo.18475405
title: Data for: Dog Brain Representations of Human Facial Expressions: Encoding Happiness and Differentiating Specific Negative Expressions

description: Abstract

Dogs can distinguish human facial expressions, particularly happiness; yet brain processes remain unclear. Using fMRI, we conducted two experiments in awake pet dogs. In Experiment 1 (n = 8), happy faces elicited a stronger response than neutral faces in a right temporal cluster extending to the caudate nucleus, including the rostral Sylvian gyrus. In Experiment 2 (n = 12), dogs viewed faces expressing happiness, anger, fear, or sadness. Using the Experiment 1 cluster as a region of interest, a machine-learning classifier distinguished happiness from each negative facial expression, but not between negative pairs, suggesting this region is specific for happy faces. Whole-brain representational similarity analyses revealed activity patterns differentiating angry vs. fearful faces (right mid ectosylvian and left splenial gyri) and sad vs. fearful faces (right rostral suprasylvian gyrus) but not angry vs. sad faces. This provides the first evidence that dog brains can distinguish between two negative facial expressions. 

This dataset containsExperiment 1



Raw data 40 functional runs 

GLM results


Experiment  2



Raw data 96 functional runs 

RSA searchlight group maps for Anger vs Fear and Sadness vs Fear

Individual similarity maps for Anger vs Fear and Sadness vs Fear and Sadness vs Anger