cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14703003.v2
title: Deep learning of cross-species single-cell landscapes identifies conserved regulatory programs underlying cell types

description: Despite extensive efforts to generate and analyze reference genomes, genetic models to predict gene regulation and cell fate decisions are lacking for most species. Here, we generated whole-body single-cell transcriptomic landscapes of zebrafish, Drosophila and earthworm. We then integrated cell landscapes from eight representative metazoan species to study gene regulation across evolution. Using these uniformly constructed cross-species landscapes, we developed a deep-learning-based strategy, Nvwa, to predict gene expression and identify regulatory sequences at the single-cell level. We systematically compared cell-type-specific transcription factors to reveal conserved genetic regulation in vertebrates and invertebrates. Our work provides a valuable resource and offers a new strategy for studying regulatory grammar in diverse biological systems.
DOI: 10.6084/m9.figshare.14703003.v1
title: Deep learning of cross-species single cell atlases identifies conserved regulatory programs underlying cell types

description: Despite extensive efforts to sequence different genomes, genetic models to interpret gene regulation and cell fate decisions are lacking for most species. Here, we performed whole-body single-cell transcriptomic analysis of zebrafish, Drosophila, and earthworm. We then mapped cell landscapes covering eight representative metazoan species to study gene regulation through evolution. With uniformly constructed cross-species datasets, we developed a deep learning-based strategy, Nvwa, to predict gene expression landscapes and decipher regulatory sequences at the single-cell level. We systematically compared cell type-specific transcription factors (TFs) to reveal conserved genetic regulation among vertebrates and invertebrates. Our work provides a valuable resource and a novel strategy for studying regulatory language in diverse biological systems.
DOI: 10.6084/m9.figshare.21202127
title: Transcriptome expression of Bombus kashmirensis

description: The data are transcriptome expression of <em>Bombus kashmirensis</em> in different altitudes. The data was gained by the following way: The extracted mRNA was used for synthesis of cDNA by reverse transcription and random hexamers after dealing with fragmentation buffer. Then the ends of the cDNA were repaired by End Repair Mix, a single “A” base was added to the ends. The cDNA was sequenced on the Illumina NovaSeq 6000 platform after PCR amplification. The raw data was gained from the Illumina platform by CASAVA,
DOI: 10.6084/m9.figshare.21202127.v1
title: Transcriptome expression of Bombus kashmirensis

description: The data are transcriptome expression of <em>Bombus kashmirensis</em> in different altitudes. The data was gained by the following way: The extracted mRNA was used for synthesis of cDNA by reverse transcription and random hexamers after dealing with fragmentation buffer. Then the ends of the cDNA were repaired by End Repair Mix, a single “A” base was added to the ends. The cDNA was sequenced on the Illumina NovaSeq 6000 platform after PCR amplification. The raw data was gained from the Illumina platform by CASAVA,
DOI: 10.5517/ccdc.csd.cc28d9qq
title: CCDC 2097203: Experimental Crystal Structure Determination

description: Related Article: Yuanning Feng, Partha Jyoti Das, Ryan M. Young, Paige J. Brown, Jessica E. Hornick, Jacob A. Weber, James S. W. Seale, Charlotte L. Stern, Michael R. Wasielewski, J. Fraser Stoddart|2022|J.Am.Chem.Soc.|144|16841|doi:10.1021/jacs.2c04906
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d9rr
title: CCDC 2097204: Experimental Crystal Structure Determination

description: Related Article: Yuanning Feng, Partha Jyoti Das, Ryan M. Young, Paige J. Brown, Jessica E. Hornick, Jacob A. Weber, James S. W. Seale, Charlotte L. Stern, Michael R. Wasielewski, J. Fraser Stoddart|2022|J.Am.Chem.Soc.|144|16841|doi:10.1021/jacs.2c04906
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d9ss
title: CCDC 2097205: Experimental Crystal Structure Determination

description: Related Article: Yuanning Feng, Partha Jyoti Das, Ryan M. Young, Paige J. Brown, Jessica E. Hornick, Jacob A. Weber, James S. W. Seale, Charlotte L. Stern, Michael R. Wasielewski, J. Fraser Stoddart|2022|J.Am.Chem.Soc.|144|16841|doi:10.1021/jacs.2c04906
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d9tt
title: CCDC 2097206: Experimental Crystal Structure Determination

description: Related Article: Yuanning Feng, Partha Jyoti Das, Ryan M. Young, Paige J. Brown, Jessica E. Hornick, Jacob A. Weber, James S. W. Seale, Charlotte L. Stern, Michael R. Wasielewski, J. Fraser Stoddart|2022|J.Am.Chem.Soc.|144|16841|doi:10.1021/jacs.2c04906
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d9vv
title: CCDC 2097207: Experimental Crystal Structure Determination

description: Related Article: Yuanning Feng, Partha Jyoti Das, Ryan M. Young, Paige J. Brown, Jessica E. Hornick, Jacob A. Weber, James S. W. Seale, Charlotte L. Stern, Michael R. Wasielewski, J. Fraser Stoddart|2022|J.Am.Chem.Soc.|144|16841|doi:10.1021/jacs.2c04906
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mkhz
title: CCDC 2104171: Experimental Crystal Structure Determination

description: Related Article: Amymarie K. Bartholomew, Ilana B. Stone, Michael L. Steigerwald, Tristan H. Lambert, Xavier Roy|2022|J.Am.Chem.Soc.|144|16773|doi:10.1021/jacs.2c08815
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mkj0
title: CCDC 2104172: Experimental Crystal Structure Determination

description: Related Article: Amymarie K. Bartholomew, Ilana B. Stone, Michael L. Steigerwald, Tristan H. Lambert, Xavier Roy|2022|J.Am.Chem.Soc.|144|16773|doi:10.1021/jacs.2c08815
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc293hc9
title: CCDC 2118520: Experimental Crystal Structure Determination

description: Related Article: Brant Maitland, Andreas Stasch, Cameron Jones|2022|Aust.J.Chem.|75|543|doi:10.1071/CH21283
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc293hdb
title: CCDC 2118521: Experimental Crystal Structure Determination

description: Related Article: Brant Maitland, Andreas Stasch, Cameron Jones|2022|Aust.J.Chem.|75|543|doi:10.1071/CH21283
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc293hfc
title: CCDC 2118522: Experimental Crystal Structure Determination

description: Related Article: Brant Maitland, Andreas Stasch, Cameron Jones|2022|Aust.J.Chem.|75|543|doi:10.1071/CH21283
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15151/esrf-es-874760178
title: NORWAY BAG

description: The fifteen PIs associated to this proposal represent the entire crystallography community in Norway and are affiliated to the major Norwegian universities. The research interests of the PIs and their collaborators revolves around topics linked to structural biology and material sciences. We apply for beam time for single- and multi-wavelength MX, Bio-SAXS and Cryo-EM, in support of our research projects funded e.g. by the Research Council of Norway and the ERC. Examples of research projects or topics are carbohydrate-active proteins of medical or bioeconomic relevance, inhibition of DNA repair enzymes, metalloprotein function and catalysis, regulation of cell-cycle processes, enzyme discovery, antibiotic resistance/drug-discovery and neurological diseases. Our overarching aim is to use bright synchrotron sources to produce high quality science.
DOI: 10.15151/esrf-es-874769967
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: Our BAG is composed of eight PIs at six different institutions in Italy and Austria. We focus on a large variety of human, bacterial, viral and synthetic protein targets and address diverse biological contexts by combining structural biology with biochemistry, biophysics, cellular and in vivo investigations.
DOI: 10.15151/esrf-es-885249440
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX & SAXS to study different biological macromolecules. The non-proprietary agreement signed between ESRF and the Department of Biotechnology (DBT) enables studies that provide fundamental mechanistic insight regarding different biological processes. A brief description of over 50 research groups is provided in the global summary and a summary of their research contributions involving data collected at ESRF is provided in the 2 year BAG report. The ESRF-India partnership is supported by a single grant provided to the RCB by the DBT. Please note that a report listing no. of shifts utilized, details of users and the research output from these visits has to be sent to the DBT to obtain release of funds to pay ESRF membership dues. Consequently, all the structural biologists from India are grouped in a single BAG to enable monitoring of progress to collect the required statistics.
DOI: 10.15151/esrf-es-896696469
title: Structural characterization of high n Ruddlesden-Popper nickelates under operating conditions of solid oxide cell oxygen electrode

description: This proposal aims at obtaining precise structural and microstructural models of two complex Ruddlesden-Popper (RP) oxides of different dimensionality La3Ni2O7±δ and Ln4Ni3O10±δ (Ln = La, Pr), studied for solid oxide fuel and electrolysis cell (SOFC & SOEC) applications, by high resolution powder synchrotron X-Ray diffraction at temperatures close to the operating conditions of the cells (between RT and 950°C under air).
DOI: 10.15151/esrf-es-931791052
title: Iron valence in basaltic molten glass

description: The purpose of this experiment is to explore the valence of iron in molten basaltic rocks, in particular the relative abundance of iron II and III, by XAS measurements at the iron K-edge. The possibility of iron redox zonation from the center of the samples to the edges will be explored.
DOI: 10.15151/esrf-es-895887564
title: Understanding the interactions between CO2 and novel cement materials via advanced XRD-CT

description: The degradation mechanism induced by the reaction of a cement and CO2 is called carbonation. Given the CO2 concentration in the air is at its highest in human history, it poses a tremendous threat to the longevity of infrastructure. This study is the world’s first time-resolved carbonation XRD-CT evaluation of novel low carbon cements, and provides new fundamental knowledge about factors controlling changes in mineralogy, reaction products, and microstructure upon CO2 exposure. Specifically this study will identify changes in porosity and microcracks formation occurring in specimens upon CO2 exposure; elucidate carbonation extent of low carbon cements, tracing changes in pore structure and formation of crystalline reaction products (e.g. carbonate polymorphs) when exposed to CO2; and will aid validating/ refuting existing carbonation mechanisms proposed for low carbon cements. These unique outcomes will enable optimisation of cement formulations for increasing carbonation resistance.
DOI: 10.6084/m9.figshare.21202130
title: Untitled Item

description: data set on agricultural economics
DOI: 10.6084/m9.figshare.21202130.v1
title: Untitled Item

description: data set on agricultural economics
DOI: 10.5281/zenodo.7110935
title: Evolution of binary gender and geographic diversity in the editorial boards of Geochimica et Cosmochimica Acta and Chemical Geology

description: Dataset from article <strong>Evolution of diversity in the editorial boards of <em>Geochimica et Cosmochimica Acta </em>and <em>Chemical Geology</em> </strong> by Pourret et al. published in European Science Editing
DOI: 10.5281/zenodo.7110934
title: Evolution of binary gender and geographic diversity in the editorial boards of Geochimica et Cosmochimica Acta and Chemical Geology

description: Dataset from article <strong>Evolution of diversity in the editorial boards of <em>Geochimica et Cosmochimica Acta </em>and <em>Chemical Geology</em> </strong> by Pourret et al. published in European Science Editing
DOI: 10.6084/m9.figshare.21202145
title: Transcriptome expression of Bombus waltoni

description: The data is the transcriptome expression of <em>Bombus waltoni </em>from different altitudes. The extracted mRNA was used for synthesis of cDNA by reverse transcription and random hexamers after dealing with fragmentation buffer. Then the ends of the cDNA were repaired by End Repair Mix, a single “A” base was added to the ends. The cDNA was sequenced on the Illumina NovaSeq 6000 platform after PCR amplification. The raw data was gained from the Illumina platform by CASAVA .
DOI: 10.6084/m9.figshare.21202145.v1
title: Transcriptome expression of Bombus waltoni

description: The data is the transcriptome expression of <em>Bombus waltoni </em>from different altitudes. The extracted mRNA was used for synthesis of cDNA by reverse transcription and random hexamers after dealing with fragmentation buffer. Then the ends of the cDNA were repaired by End Repair Mix, a single “A” base was added to the ends. The cDNA was sequenced on the Illumina NovaSeq 6000 platform after PCR amplification. The raw data was gained from the Illumina platform by CASAVA .
DOI: 10.5517/ccdc.csd.cc293hgd
title: CCDC 2118523: Experimental Crystal Structure Determination

description: Related Article: Brant Maitland, Andreas Stasch, Cameron Jones|2022|Aust.J.Chem.|75|543|doi:10.1071/CH21283
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f6fd
title: CCDC 2127853: Experimental Crystal Structure Determination

description: Related Article: Gurupada Hazra, Gitanjali Mishra, Rambabu Dandela, Barla Thirupathi|2022|J.Org.Chem.|87|11925|doi:10.1021/acs.joc.2c00340
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f6gf
title: CCDC 2127854: Experimental Crystal Structure Determination

description: Related Article: Gurupada Hazra, Gitanjali Mishra, Rambabu Dandela, Barla Thirupathi|2022|J.Org.Chem.|87|11925|doi:10.1021/acs.joc.2c00340
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f9km
title: CCDC 2127950: Experimental Crystal Structure Determination

description: Related Article: Gurupada Hazra, Gitanjali Mishra, Rambabu Dandela, Barla Thirupathi|2022|J.Org.Chem.|87|11925|doi:10.1021/acs.joc.2c00340
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f9ln
title: CCDC 2127951: Experimental Crystal Structure Determination

description: Related Article: Gurupada Hazra, Gitanjali Mishra, Rambabu Dandela, Barla Thirupathi|2022|J.Org.Chem.|87|11925|doi:10.1021/acs.joc.2c00340
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6gjk
title: CCDC 2151168: Experimental Crystal Structure Determination

description: Related Article: Grace E. Hubbell, Jetze J. Tepe|2022|Org.Lett.|24|6740|doi:10.1021/acs.orglett.2c02508
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw1hs
title: CCDC 2170945: Experimental Crystal Structure Determination

description: Related Article: Benjamin D. Bergstrom, Garrett Toth-Williams, Anna Lo, Jeffrey W. Toman, James. C. Fettinger, Jared T. Shaw|2022|J.Org.Chem.|87|12175|doi:10.1021/acs.joc.2c01322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw1jt
title: CCDC 2170946: Experimental Crystal Structure Determination

description: Related Article: Benjamin D. Bergstrom, Garrett Toth-Williams, Anna Lo, Jeffrey W. Toman, James. C. Fettinger, Jared T. Shaw|2022|J.Org.Chem.|87|12175|doi:10.1021/acs.joc.2c01322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw1kv
title: CCDC 2170947: Experimental Crystal Structure Determination

description: Related Article: Benjamin D. Bergstrom, Garrett Toth-Williams, Anna Lo, Jeffrey W. Toman, James. C. Fettinger, Jared T. Shaw|2022|J.Org.Chem.|87|12175|doi:10.1021/acs.joc.2c01322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bw1lw
title: CCDC 2170948: Experimental Crystal Structure Determination

description: Related Article: Benjamin D. Bergstrom, Garrett Toth-Williams, Anna Lo, Jeffrey W. Toman, James. C. Fettinger, Jared T. Shaw|2022|J.Org.Chem.|87|12175|doi:10.1021/acs.joc.2c01322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2byw17
title: CCDC 2173659: Experimental Crystal Structure Determination

description: Related Article: Tong Wu, Khashayar Rajabimoghadam, Ankita Puri, David D. Hebert, Yi Lin Qiu, Sidney Eichelberger, Maxime A. Siegler, Marcel Swart, Michael P. Hendrich, Isaac Garcia-Bosch|2022|J.Am.Chem.Soc.|144|16905|doi:10.1021/jacs.2c05454
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.