cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b8hu9k
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Achatocarpus praecox"
 ]
}

 The dataset includes 452 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033306-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5h3tc
title: Occurrence Download

description: A dataset containing 116823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinnyris osea"
 ]
}

 The dataset includes 116823 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033248-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64r4ks
title: Occurrence Download

description: A dataset containing 17732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.53176 40.64365,-5.96125 40.64365,-5.96125 43.93019,-9.53176 43.93019,-9.53176 40.64365))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Castanea sativa"
 ]
}

 The dataset includes 17732 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033309-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zyzwg
title: Occurrence Download

description: A dataset containing 4147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f)",
 "TaxonKey is one of (Botaurus stellaris, Podiceps cristatus, Luscinia luscinia, Jynx torquilla, Streptopelia turtur, Lanius minor, Emberiza hortulana)",
 "Year 2000-2025"
 ]
}

 The dataset includes 4147 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033310-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t25qnu
title: Occurrence Download

description: A dataset containing 7027839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acrobolbus wilsonii, Campylostelium strictum, Coscinodon horridus, Leptodontium gemmascens, Micromitrium tenerum, Narcissus willkommii, Noccaea jankae, Orthodontium gracile, Sphagnum pylaesii, Arenaria interpres, Barbatula quignardi, Bryum warneum, Calidris alpina, Calidris falcinellus, Calidris ferruginea, Coregonus pennantii, Coregonus stigmaticus, Coregonus vandesius, Limosa lapponica, Melanopsis penchinati, Narcissus lusitanicus, Renea bourguignatiana, Sorbus porrigentiformis, Sorbus subcuneata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 7027839 records from 1447 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033252-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ger4
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parinari pachyphylla Rusby"
 ]
}

 The dataset includes 319 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016140-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dguteg
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016136-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15488021
title: Sky Detection Dataset – External Images and Masks

description: Sky Detection Dataset – External Images and Corresponding Masks

This dataset contains 1708 external sky images and their corresponding masks for sky region detection. The images were collected from publicly available sources and are intended for academic and non-commercial research purposes.

The dataset is organised into two folders:  - "images/" containing the original JPG images numbered sequentially from 1.jpg to 1708.jpg  - "masks/" containing the corresponding binary mask PNG files numbered similarly from 1.png to 1708.png  

This dataset was created as part of a Master's thesis focused on computer vision techniques for sky detection.

 

Contact bkmie@qu.edu.sa
DOI: 10.5281/zenodo.15488022
title: Sky Detection Dataset – External Images and Masks

description: Sky Detection Dataset – External Images and Corresponding Masks

This dataset contains 1708 external sky images and their corresponding masks for sky region detection. The images were collected from publicly available sources and are intended for academic and non-commercial research purposes.

The dataset is organised into two folders:  - "images/" containing the original JPG images numbered sequentially from 1.jpg to 1708.jpg  - "masks/" containing the corresponding binary mask PNG files numbered similarly from 1.png to 1708.png  

This dataset was created as part of a Master's thesis focused on computer vision techniques for sky detection.

 

Contact bkmie@qu.edu.sa
DOI: 10.25349/d9jg70
title: Data from: A food web including parasites for kelp forests of the Santa Barbara Channel, California

description: We built a high-resolution topological food web for the kelp forests of
 the Santa Barbara Channel, California, USA that includes parasites and
 significantly improves resolution compared to previous webs. The
 1,098 nodes and 21,956 links in the web describe an
 economically, socially, and ecologically vital system. Nodes are broken
 into life-stages. There are 549 free-living life-stages
 (comprising 492 species from 21 Phyla) and
 549 parasitic life-stages (comprising 450 species from
 10 Phyla). Links represent three kinds of trophic interactions. There are
 9,352 predator-prey links, 2,733 parasite-host links and
 9,871 predator-parasite links. This food web is unique in that all
 decisions for including nodes and links are documented, and extensive
 metadata in the node list allows users to filter the node list to suit
 their research questions. The kelp-forest food web is more species rich
 than any other published food web with parasites, and has a larger
 proportion of parasitic species than other webs. Because we have organized
 the food web topologically, its use may be somewhat limited in the
 opportunity to detect adaptation, realized as changes in link weights. Our
 food web may be used to predict how kelp forests may respond to change,
 will advance our understanding of parasites in ecosystems, and fosters
 development of food-web theory that incorporates large networks.
description: Please see data descriptor published in Scientific Data.
DOI: 10.5061/dryad.vq83bk3qc
title: Data from: Lateralisation correlates with individual differences in inhibitory control in zebrafish

description: The study investigated the relationship between cerebral lateralisation
 and inhibitory control in zebrafish. Lateralisation was assessed using a
 mirror test. Fish were observed in an apparatus with mirror walls and eye
 preference for observing the mirror image was recorded. This preference
 was used to calculate the relative and the absolute lateralisation index.
 Inhibitory control was assessed using a foraging task. Fish were
 exposed to live prey enclosed inside a transparent tube. The number of
 attacks and its reduction over time were used as measures of inhibition.
DOI: 10.5061/dryad.xd2547df0
title: The reliability and validity of an Arabic version of the modified Japanese Orthopedic Association score for cervical myelopathy

description: Purpose: The modified Japanese Orthopedic Association score (mJOA) is
 considered as one of the most comprehensive scores in assessment of
 patients with cervical myelopathy. Hence, comes the need for providing a
 validated, translated and cross-culturally adapted versions in different
 languages in order to standardize patient’s evaluation. This study aims to
 translate and validate an Arabic version of the mJOA. Methods: 65 patients
 of variable age and etiologies for compressive cervical myelopathy were
 recruited. Forward and backward translations were performed, followed by
 measurement of intra-observer and inter-observer reliability using
 intra-class correlation coefficient and Cronbach’s alpha coefficient.
 Results: The patients had a mean age of 58.08, predominantly males
 (69.2%). The intra-observer reliability and inter-observer reliability
 showed almost perfect agreement for the different sections and the total
 score, with 96.8 and 97.4, respectively. Conclusion: This study provides a
 reliable, cross-culturally adapted Arabic version of mJOA for cervical
 myelopathy patients. Although the study was conducted on Egyptian
 patients, we believe it could be implemented with majority of Arabic
 speaking population.
DOI: 10.5061/dryad.j6q573nb4
title: Data from: Testing the greater male variability hypothesis: male mountain chickadees exhibit larger variation in reversal learning compared to females

description: The ‘greater male variability hypothesis’ predicts that males exhibit
 larger ranges of variation in cognitive performance compared to females,
 however, support for this hypothesis has come exclusively from studies of
 humans. This scenario aligns with the fact that the vast majority of the
 literature assessing sex differences in cognition is based on studies of
 humans and a few other mammals. In order to elucidate the underpinnings of
 cognitive variation and the potential for fitness consequences, we must
 investigate sex differences in cognition in non-mammalian systems as well.
 Here we assess the performance of male and female food-caching birds on a
 spatial learning and memory task and a reversal spatial task to address
 whether there are sex differences in mean cognitive performance or in the
 range of variation in performance. For both tasks, male and female mean
 performance was similar across four years of testing; however, males did
 exhibit a wider range of variation in performance on the reversal spatial
 task compared to females. The implications for mate choice and sexual
 selection of cognitive abilities are discussed, with a call for further
 investigation into sex-related cognitive variation.
DOI: 10.5061/dryad.zs7h44j64
title: Data from: Plant community dynamics and carbon sequestration in Sphagnum-dominated peatlands in the era of global change

description: Aim: Hydroclimatic shift and anthropogenic-driven nitrogen deposition are
 major outcomes of global change that could compromise the functioning of
 many peatlands as a carbon sink. For Sphagnum-dominated peatlands, an
 emerging hypothesis is that the change could be triggered by shifts in
 competitive dominance among plant functional groups, specifically from the
 currently predominant decay-resistant Sphagnum to the more decomposable
 vascular plants. However, the relationship between Sphagnum and vascular
 plant occurrence is notably complex and also includes facilitative
 interactions that are crucial to the productivity of Sphagnum and
 therefore carbon sequestration. Location: Global Taxa: Northern
 peatlands—Sphagnum moss and vascular plants Methods: We use a conceptual
 review to examine underlying mechanisms for the competitive exclusion
 hypothesis and the nature of facilitative interactions between Sphagnum
 and vascular plants under the potential global change conditions. We
 complement the review with an empirical study of peatlands with
 contrasting hydrology to provide some critical insights into the potential
 effects of change in plant communities on carbon sequestration. We also
 propose a conceptual model that presents probable combinations of global
 change factors and their implications for carbon sequestration. Results:
 Vegetation structure in Sphagnum-dominated peatland appears to be driven
 largely by hydrology, rather than competition among plant functional
 groups. The peat deposit also exerts some controls (e.g., nutrient
 immobilization) on biotic structure, thereby acting as resistance against
 an abrupt shift in plant communities. Main conclusions: Peatland controls
 that constrain vegetation shifts have developed over a millennial
 timescale in many peatlands, and the pace of climate change may not allow
 enough time for the establishment of those mechanisms in younger
 peatlands. Thus, the persistence of a given peatland as a carbon sink also
 likely depends on the successional stage of the peatland.
DOI: 10.5061/dryad.gxd2547hv
title: Severe hypoxia exposure inhibits larval brain development but does not affect the capacity to mount a cortisol stress response in zebrafish

description: Fish nursery habitats are increasingly hypoxic and the brain is recognized
 as highly hypoxia-sensitive, yet there is a lack of information on the
 effects of hypoxia on the development and function of the larval fish
 brain. Here, we tested the hypothesis that by inhibiting brain
 development, larval exposure to severe hypoxia has persistent functional
 effects on the cortisol stress response in zebrafish (Danio rerio).
 Exposing 5 days post-fertilization (dpf) larvae to 10% dissolved O2 (DO)
 for 16 h only marginally reduced survival, but it decreased forebrain
 neural proliferation by 55%, and reduced the expression of neurod1, gfap,
 and mbpa, markers of determined neurons, glia, and oligodendrocytes,
 respectively. The 5 dpf hypoxic exposure also elicited transient increases
 in whole body cortisol and in crf, uts1, and hsd20b2 expression, key
 regulators of the endocrine stress response. Hypoxia exposure at
 5 dpf also inhibited the cortisol stress response to hypoxia in 10 dpf
 larvae and increased hypoxia tolerance. However, 10% DO exposure
 at 5 dpf for 16h did not affect the cortisol stress response to a novel
 stressor in 10 dpf larvae or the cortisol stress response to hypoxia in
 adult fish. Therefore, while larval exposure to severe hypoxia
 can inhibit brain development, it also increases hypoxia tolerance. These
 effects may transiently reduce the impact of hypoxia on the cortisol
 stress response but not its functional capacity to respond to novel
 stressors. We conclude that the larval cortisol stress response
 in zebrafish has a high capacity to cope with severe hypoxia-induced
 neurogenic impairment.
DOI: 10.5061/dryad.15dv41nvh
title: Cultural keystone species revisited: are we asking the right questions?

description: The cultural keystone species theory predicts plant species that are
 culturally important, play a role in resource acquisition, fulfil a
 psycho-socio-cultural function within a given culture, have high
 use-value, have an associated naming and terminology in a native language,
 and a high level of species irreplaceability qualify for cultural keystone
 species designation. This theory was proposed as a framework for
 understanding relationships between human societies and species that are
 integral to their culture.  A greater understanding of
 the dynamic roles of cultural keystones in both ecosystem processes and
 cultural societies is a foundation for facilitating biocultural
 conservation.  Given such important direct conservation
 implications of the cultural keystone species theory, we reviewed the use
 of this theoretical framework across the literature to identify new
 directions for research. Most studies often emphasized the role
 of cultural keystones species in human societies but failed to provide a
 direct test of the theory and underemphasized their potential roles in
 ecosystem processes. To date, 4.4% of studies that mentioned
 cultural keystone species provided a direct test of the theory, whereas
 47.4% have cited or applied keystone designation to a given species
 without a direct test of the theory. Studies that tested the cultural
 keystone species theory primarily occurred in North America. Few studies
 testing the cultural keystone species theory occurred in Australia and
 Europe with none occurring in Africa.  Most cultural
 keystone species have been designated as such
 qualitatively based on researcher subjectivity while other
 studies have designated keystone species with quantitative indices of
 cultural importance, often incorporating researcher biases or measuring a
 few of the cultural keystone status predictors rather than all of them,
 indicating a lack of consensus in identifying cultural keystone species.
 Thus, we pose the need for a paradigm shift toward the
 development of serious and systematic approaches for keystone designation.
DOI: 10.5061/dryad.sbcc2fr3q
title: Data from: Climate and vegetation structure shape ant communities along elevational gradients on the Colorado Plateau

description: Aim: Terrestrial animal communities are largely shaped by vegetation and
 climate. With climate also shaping vegetation, can we attribute animal
 patterns solely to climate? To understand this, we compare the relative
 and interactive effects of climate and vegetation on an animal community.
 Our study observes ant community changes along climatic gradients (i.e.
 elevational gradients) within different habitat types (i.e. open and
 forest). We compare the explanatory powers and effect sizes of climate and
 vegetation variables on ant communities and describe what drives
 elevational distributions of ant species. Location: Colorado Plateau,
 southwestern United States Taxon: Formicidae Methods: We sampled ants and
 vegetation along two elevational gradients spanning 1132m with average
 annual temperature and precipitation differences of 5.7C° and 645 mm,
 respectively. Regression analysis and structural equation modeling was
 then used to test the relative effects of climate and vegetation variables
 on ant communities. Results: Climate variables had the strongest
 correlations and the largest effect sizes on ant communities, while
 vegetation composition, richness, and primary productivity were relatively
 small. Precipitation was the strongest predictor for most ant community
 metrics. Ant richness and abundance had a negative relationship with
 precipitation in forested habitats, and positive in open habitats. Main
 conclusions: Our results show strong direct climate effects on ants with
 little or no effects of vegetation composition or primary productivity,
 but contrasting patterns between vegetation type (i.e. forested vs open)
 with precipitation. This indicates vegetation structure can modulate
 climate responses of ant communities. Our study demonstrates
 climate-animal relationships may vary among vegetation types which can
 impact both findings from elevational studies and how communities will
 react to changes in climate.
description: Ants through pit fall traps, vegetation through point intercept
 in 1m2 plots
DOI: 10.6078/d1tm5t
title: Data from: Indirect genetic control of migration in a salmonid fish

description: The paper titled "Indirect genetic control of migration in a salmonid
 fish" examines the genetic architecture of migration in a partially
 migratory salmonid fish, Oncorhynchus mykiss. We assess
 the shared genetic basis between early life growth and migration, and find
 a shared allelic basis on the Omy05 region of the genome. We then test if
 early life growth differs among resident/migratory genotype juvenile fish
 in streams in the South Fork Eel River watershed, in Northern California,
 USA. In summary, we find that the shared genetic basis for migration and
 physiological traits suggest that the genetic basis of migration is likely
 indirect, where migration is status-dependent strategy.  This
 Dryad deposit contains two datasets. The first is the set of 128 SNPs that
 we used to compare alleles between migratory/resident genotype groups and
 fast vs. slow developing clonal lines. This dataset includes the position
 of each SNP on Omy05, the major allele for the resident/migraotry genotype
 groups, the minor allele frequency for each group, and the allele for each
 clonal line. The second is a dataframe with sex and life history genotype
 for wild, juvenile fish in the study streams. Additional data that are
 used in this paper have been previously published.  Sequence data
 for wild O. mykiss from the South Fork Eel River are
 available at NCBI, SRA accession: PRJNA599015 Data on fish (capture date
 and location, and body size) are available on Dryad: Kelson S, Miller M,
 Thompson T, O’Rourke S, Carlson S. 2020. Dataset from: Temporal dynamics
 of migration-linked genetic variation are driven by streamflows and
 riverscape permeability. https://doi.org/10.6078/D1DM6G. Sequence data for
 clonal lines are available in the following publications: Miller MR,
 Brunelli JP, Wheeler PA, Liu S, Rexroad CE, Palti Y, Doe CQ, Thorgaard GH.
 2012 A conserved haplotype controls parallel adaptation in geographically
 distant salmonid populations. Mol. Ecol. 21, 237–249.
 (doi:10.1111/j.1365-294X.2011.05305.x) Gao G, Nome T, Pearse DE, Moen T,
 Naish KA, Thorgaard GH, Lien S, Palti Y. 2018 A new single nucleotide
 polymorphism database for rainbow trout generated through whole genome
 resequencing. Front. Genet. 9, 1–11. (doi:10.3389/fgene.2018.00147)
description: See methods in paper and references within.
description: Read me files are included.
DOI: 10.5061/dryad.0zpc866vj
title: Spatial-numerical associations in humans

description: Number sense requires an ability to estimate values and respective
 differences - although how brains most efficiently processes information
 remains unknown. We tested if participants demonstrate processing
 preferences for horizontal or vertical representations during paired
 number comparisons. For numbers above the subitizing range of 1-4 with the
 largest number positioned upwards, participants demonstrated significantly
 faster and more accurate responses.