cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/rb18a-m4h20
title: MEF cell Drp1 Knockout

description: Raw data files of MEF cell Drp1 Knockout
description: <strong>Tilt Series Date:</strong> 2018-11-06</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -2.5 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> tomo3D</p>
<strong>Collaborators and Roles:</strong> Wei Yang grew and froze cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown on R2/2 quantifoil gold grids coated with 0.1 mg/ml fibronectin.</p>
<strong>Sample Preparation:</strong> 3min 10uM FCCP, 20min 200nM mitotracker Red, plunge frozen and FIB milled.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-20/rawdata/</p>TS10.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-20/rawdata/TS10.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS10_4bin_SIRTl20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-20/3dimage_101836/TS10_4bin_SIRTl20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pkspf-vwy18
title: U937 infection

description: Lp02 pCyaA::RalF-Ub V76 .  U937
description: <strong>Tilt Series Date:</strong> 2020-07-31</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Stephen Carter</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 1h infection, 1-2 washes, fibronectin/vitronectin/no matrix. Legionella: 2.5 O.D, 3h after 200mM  IPTG induction, at O.D. 3</p>
<strong>Sample Preparation:</strong> 200mesh Gold quantifoil,  10nm gold, 37deg C, 80-90% humidity</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-07-31-33/rawdata/</p>tomography5_149.mrc,  Tilt Series (Pixel Size 0.265 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-07-31-33/rawdata/tomography5_149.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomography5_149_full.rec,  Reconstruction (Pixel Size 1.06 nm), 516.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5td7r-g4132
title: JV9298

description: DotF-sfGFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2019-10-14</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -5.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> PNCC Krios 3</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Strain from Joe Vogel</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Late exponential/Early stationary</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper. Vitrobot 22 deg C, 100% humidity, 4uL of 2X concentrated culture, blot force 6, blot time 3 sec, drain time 1 sec, wait time 0 sec.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-95/rawdata/</p>JV9298_132_A4.mrc,  Tilt Series (Pixel Size 0.1323 nm), 7.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-95/rawdata/JV9298_132_A4.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9298_132_A4.rec,  Reconstruction (Pixel Size 1.0584 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ggz79-gvz34
title: JV9298

description: Legionella pneumophila JV9298 DotF-GFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2020-04-23</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, tomo3d</p>
<strong>Collaborators and Roles:</strong> Sample preparation & data collection: Yuxi Liu Data processing: Phyllis Wang & Yuxi Liu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O.D. 2.5-3.0 in AYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper grid, 10nm gold, 100% humidity, 25deg C, 4uL of 2X concentrated cells Blotting: force 6, blot 3sec, wait 1sec</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-04-23-118/3dimage_123916/</p>JV9298_PD-1-3_486_SIRT_1k.mrc,  Reconstruction (Pixel Size 1.04 nm), 2.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9298_PD-1-3_486.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.15446771
title: Evaluating Precipitation Behavior in CESM2 Using Nudging Technique

description: These are post-processed data and code for paper "Evaluating Precipitation Behavior in CESM2 Using Nudging Technique".
DOI: 10.5281/zenodo.15602861
title: Evaluating Precipitation Behavior in CESM2 Using Nudging Technique

description: These are post-processed data and code for paper "Evaluating Precipitation Behavior in CESM2 Using Nudging Technique". 

The figures and associated data are stored in plot.zip, and the sample of run scripts and the revised source codes are stored in script.zip.
DOI: 10.15468/dl.4wnzak
title: Occurrence Download

description: A dataset containing 21 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.continent = 'ASIA'
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND (occurrence.taxonkey = 5251961 OR occurrence.acceptedtaxonkey = 5251961 OR occurrence.kingdomkey = 5251961 OR occurrence.phylumkey = 5251961 OR occurrence.classkey = 5251961 OR occurrence.orderkey = 5251961 OR occurrence.familykey = 5251961 OR occurrence.genuskey = 5251961 OR occurrence.specieskey = 5251961)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 21 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022822-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/54xjoq
title: Genetic Data

description: Processed genetic data for the paper "Artemisinin Partial Resistance Mutations in Zanzibar and Tanzania Suggest Regional Spread and African Origins, 2023"
DOI: 10.15468/dl.ztva34
title: Occurrence Download

description: A dataset containing 41799 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calliopsis Smith, 1853"
 ]
}

 The dataset includes 41799 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022836-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/eu9ggw
title: Metadata

description: Metadata for the paper "Artemisinin Partial Resistance Mutations in Zanzibar and Tanzania Suggest Regional Spread and African Origins, 2023". The metadata includes a sample ID, study visit date, age and clinic location.
DOI: 10.25574/26394
title: Chandra X-ray Observatory ObsId 26394

description: C-BASS: A Chandra Legacy Survey of AGN at the Highest Spatial Resolutions
DOI: 10.15468/dl.a9dxpg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocynus vittatus Castelnau, 1861",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022651-250525065834625/datasets/export for details.
DOI: 10.15468/dl.mv8vg7
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Burmeistera cylindrocarpa Zahlbr."
 ]
}

 The dataset includes 17 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022653-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9vcdz
title: Occurrence Download

description: A dataset containing 7012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Observation.org, Nature data from around the World, Butterfly distribution records for the UK from Butterfly Conservation, up to 2019, UK Butterfly Monitoring Scheme (UKBMS), Artportalen, Natural History Museum (London) Collection Specimens, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((6.38277 51.31104,8.54628 51.31104,8.54628 52.73912,6.38277 52.73912,6.38277 51.31104))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)"
 ]
}

 The dataset includes 7012 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022652-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mba9wj
title: Occurrence Download

description: A dataset containing 73922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Herniaria glabra"
 ]
}

 The dataset includes 73922 records from 745 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000908-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fna2hy
title: Occurrence Download

description: A dataset containing 101845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Apera spica-venti"
 ]
}

 The dataset includes 101845 records from 671 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000907-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eyghcw
title: Employee Ownership Trusts and Perpetual Purpose Trusts in the United States

description: This is a working database of purpose trusts in the United States. If you know of more, please email us at mark.c.hand@gmail.com! This dataset was initially published in partnership with Common Trust, Broughton Consulting, and Liminal Advisors. 

It is maintained by The Stakehold (thestakehold.com, formerly known as the Research Cluster on Employee Ownership and Workplace Democracy), with initial funding from the Institute for the Study of Employee Ownership and Profit Sharing at Rutgers University and Southern Methodist University's Dedman College Interdisciplinary Institute.
DOI: 10.5281/zenodo.16969474
title: MAKTABGACHA TA'LIM TASHKILOTI PEDAGOGINING INNOVATSION FAOLIYATI TUZILISHI

description: Mazkur maqolada maktabgacha ta’lim tashkilotida pedagogning innovatsion texnologiyalarni qo‘llashining samaradorlik xususiyatlari va ulardan foydalanishda e’tibor berish zarur bo‘lgan jihatlar haqida so‘z yuritilgan.
DOI: 10.5281/zenodo.16969475
title: MAKTABGACHA TA'LIM TASHKILOTI PEDAGOGINING INNOVATSION FAOLIYATI TUZILISHI

description: Mazkur maqolada maktabgacha ta’lim tashkilotida pedagogning innovatsion texnologiyalarni qo‘llashining samaradorlik xususiyatlari va ulardan foydalanishda e’tibor berish zarur bo‘lgan jihatlar haqida so‘z yuritilgan.
DOI: 10.15468/dl.tw4w7h
title: Occurrence Download

description: A dataset listing the 4104 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is University of Florida Herbarium (FLAS)",
 "GadmGid is USA.10_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 4104 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000953-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/qjmfnj
title: Data Management and Sharing Plan for: Efficacy of immunization with 4C-MenB in preventing experimental urethral infection with Neisseria gonorrhoeae.

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.15468/dl.erdtgq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pomatorhinus phayrei",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000976-250827131500795/datasets/export for details.
DOI: 10.48472/deposita/frrq8r
title: Dados de pesquisa sobre caracterização da comunicação LoRa em um ambiente de floresta usando o campus da Universidade Federal do Amazonas

description: [pt] Dados de pesquisa sobre caracterização da comunicação LoRa em um ambiente de floresta usando o campus da Universidade Federal do Amazonas. Foi avaliado os parâmetros SF, BW, PT e duas distâncias (72,4m e 150m) e analisadas as métricas RSSI, SNR e PDR (taxa de entrega de pacotes).
description: [en] Research data on characterization of LoRa communication in a forest environment using the campus of the Federal University of Amazonas. The parameters SF, BW, PT were evaluated at two distances (72.4m and 150m), and the metrics RSSI, SNR, and PDR (package delivery rate) were analyzed.
DOI: 10.15468/dl.uk4bdn
title: Occurrence Download

description: A dataset containing 46814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Eleocharis multicaulis"
 ]
}

 The dataset includes 46814 records from 539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000975-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/kyghw-kkz76
title: JV9298

description: Legionella pneumophila JV9298 DotF-GFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2020-04-23</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, tomo3d</p>
<strong>Collaborators and Roles:</strong> Sample preparation & data collection: Yuxi Liu Data processing: Phyllis Wang & Yuxi Liu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O.D. 2.5-3.0 in AYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper grid, 10nm gold, 100% humidity, 25deg C, 4uL of 2X concentrated cells Blotting: force 6, blot 3sec, wait 1sec</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-04-23-365/rawdata/</p>JV9298_PD-1-3_341.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9298_PD-1-3_341_SIRT_1k.mrc,  Reconstruction (Pixel Size 1.04 nm), 2.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e18sx-dkh69
title: Legionella_delta-lspHIJK

description: Legionella pneumophila Philadelphia-1_Lp02. Lacks all the T2SS minor pseudopilins.
description: <strong>Tilt Series Date:</strong> 2019-05-16</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-45.0°, 45.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent by Nicholas Cianciotto, Northwestern University. Data collected and processed by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for this strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-16-54/rawdata/</p>DG7_20190516_tomo0027.mrc,  Tilt Series (Pixel Size 0.26 nm), 882.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        DG7_20190516_tomo0027_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>