cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16995422
title: Diversity and environmental data sets for Multitrophic alpha and beta diversity of lake plankton across Canada

description: The file “MTI_ENVdata.xlsx” contains environmental variables from 559 sampled as part of the NSERC Canadian Lake Pulse Network project over three summers (2017-2018-2019). Lake morphometry variables were either measured on site (lake depth), or obtained from HydroLAKES v. 1.0 (Messager et al. 2016). Water quality variables (water physical and chemical properties) were collected or measured at the deepest point of each lake, following the protocols from the NSERC Canadian Lake Pulse Network (2021). Watershed land use fractions were characterized for each lake, as described by Huot et al. (2019). Variables sampling depth and units are described in “metadata_variables.xlsx”. Annual mean air temperature was obtained using WorldClim version 2.1 climate data for the years 1970-2000. 

 

The file "MTI_DIVERSITYdata.csv" contains bacterio-, phyto- and zooplankton richness, shannond diversity and local contribution to diversity (LCBD) indices calculated in 559 lakes across canada. The 'simple' approach used specnumber from the library vegan to compute richness, the function diversity in vegan for Shannon diversity and the function beta.div from the library adespatial for LCBD.  In the 'threshold' method, diversity was calculated separately for each taxonomic order of bacterio-, phyto-, or zooplankton, and then compared with the maximum richness observed for that order across all lakes. Then, for any given lake, the number of orders that reached 30 % of maximum diversity were tallied, with X being an empirically derived threshold. Simple and threshold multitrophic richness and LCBD was calculated by scaling and then averaging values for each group.

References

Huot, Y., C. A. Brown, G. Potvin, and others. 2019. The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate. Sci. Total Environ. 695: 133668. doi:10.1016/j.scitotenv.2019.133668

Messager, M. L., B. Lehner, G. Grill, I. Nedeva, and O. Schmitt. 2016. Estimating the volume and age of water stored in global lakes using a geo-statistical approach. Nat. Commun. 7: 1–11. doi:10.1038/ncomms13603

NSERC Canadian Lake Pulse Network. 2021. NSERC Canadian Lake Pulse Network field manual 2017 - 2018 - 2019 surveys, M.-P. Varin, M.-L. Beaulieu, and Y. Huot [eds.]. Université de Sherbrooke.
DOI: 10.22002/71kgv-jrk20
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-10-05</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 252.8 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, Del E from Partick</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-10-05-15/rawdata/</p>targ15.mrc,  Tilt Series (Pixel Size 0.3712 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-10-05-15/rawdata/targ15.mrc"
        > <i class="download icon"></i> Download </a></p>

        targ15_full.rec,  Reconstruction (Pixel Size 1.4848 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-10-05-15/3dimage_99261/targ15_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b2qfe-s6c08
title: JV9264

description: Raw data files of JV9264
description: <strong>Tilt Series Date:</strong> 2018-09-10</p>
<strong>Data Taken By:</strong> Jun Zhang</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -14.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joseph</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 37 degree and OD 2.5-3.0</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jza2018-09-10-44/rawdata/</p>JV9264_TS49.mrc,  Tilt Series (Pixel Size 0.2654 nm), 1.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jza2018-09-10-44/rawdata/JV9264_TS49.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9264_TS49_part55_4.rec,  Reconstruction (Pixel Size 1.0616 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jza2018-09-10-44/3dimage_98180/JV9264_TS49_part55_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c03qv-qnb49
title: MEF cells

description: Raw data files of MEF cells
description: <strong>Tilt Series Date:</strong> 2018-11-06</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -3.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> tomo3D</p>
<strong>Collaborators and Roles:</strong> Wei Yang grew and froze cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Quantifoil grids (R 2/2 gold) coated with 0.1 mg/ml fibronectin</p>
<strong>Sample Preparation:</strong> 3min 10uM FCCP, plunge frozen and FIB milled</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-10/rawdata/</p>TS4.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-10/rawdata/TS4.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS4_bin4_SIRT20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 627.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-06-10/3dimage_101826/TS4_bin4_SIRT20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ddy7h-td087
title: JV9298

description: Legionella pneumophila JV9298 DotF-GFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2020-11-27</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, tomo3d</p>
<strong>Collaborators and Roles:</strong> Sample preparation: Przemyslaw Dutka & Wei Zhao; Data collection & processing: Yuxi Liu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> collect at O.D. 2.5-3.0 in AYE. Concentrate to O.D. 10.0</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper grid, 100% humidity, 22deg C, manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-11-27-3/rawdata/</p>lam_16_tomo_3_bin4.st,  Tilt Series (Pixel Size 1.06 nm), 115.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-11-27-3/rawdata/lam_16_tomo_3_bin4.st"
        > <i class="download icon"></i> Download </a></p>

        lam_16_tomo_3_bin4_SIRT_1k.rec,  Reconstruction (Pixel Size 1.06 nm), 2.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-11-27-3/3dimage_123602/lam_16_tomo_3_bin4_SIRT_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/53pxt-q2m09
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-196/rawdata/</p>PginWT9_195.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-196/rawdata/PginWT9_195.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_195_part40_2.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-196/3dimage_115362/PginWT9_195_part40_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sbynm-mb009
title: MT310_xyl+_aurothioglucose(50um)

description: Raw data files of MT310_xyl+_aurothioglucose(50um)
description: <strong>Tilt Series Date:</strong> 2009-10-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cells were cultured and treated by Zhuo Li; data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were induced by xylose for ? hours and treated by aurothioglucose for ? hours</p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-15/rawdata/</p>09oct21a_MT310Auglu50_015.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-15/rawdata/09oct21a_MT310Auglu50_015.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct21a_MT310Auglu50_015_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-15/3dimage_9925/09oct21a_MT310Auglu50_015_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/76n03-b7770
title: CB15N single colony exponential

description: Raw data files of CB15N single colony exponential
description: <strong>Tilt Series Date:</strong> 2010-01-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Single colony. Exponential phase in PYE.</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 or R2/1, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-16/rawdata/</p>10jan09a_CB15N_016.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-16/rawdata/10jan09a_CB15N_016.mrc"
        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_016_full.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-16/3dimage_9562/10jan09a_CB15N_016_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16944397
title: Source Data for The Role of Climate TRACE in Filling Global Emissions Monitoring Gaps

description: Source Data: Climate TRACE Closes Key Gaps in Global Emissions Monitoring to Enhance Climate Action

Here, we provide two datasets that support the findings in our paper titled "The Role of Climate TRACE in Filling Global Emissions Monitoring Gaps". The paper assesses the current landscape of global greenhouse gas (GHG) emissions datasets along key dataset characteristics and reveals several limitations. These limitations motivate the development of the Climate TRACE dataset, which we introduce by evaluating it along the dataset characteristics. Both datasets are provided in .csv format and originate from the Climate TRACE dataset. Detailed descriptions of the methodologies used to estimate GHG emissions are available here. 

"city_level_annual_ghg.csv" provides annual greenhouse gas (GHG) emissions totals for 2010-2024 for 500 cities around the world, along with their population and gross domestic product (GDP). The data were used to assess changes in annual emissions over time and whether GDP impacts these trends. See column name descriptions below. 




Column name 
Description
Units


iso3_country
country code
NA


gdp_year
year for which GDP is provided 
NA


gdp_value (billions)
GDP
billions of dollars


population_year
year for which population is provided 
NA


population_value
population
people


db_city_name
city name 
NA


gdp_per_capita
GDP/population
billions of dollars/person


city_id
unique city ID
NA


21_total_emissions
total GHG emissions for 2021
100 yr CO2e


24_total_emissions
total GHG emissions for 2024
100 yr CO2e


24_21_change_total
absolute change in GHG emissions from 2021 to 2024 
100 yr CO2e


rel.percent_change
relative percent change in GHG emissions from 2021 to 2024 
%


GDP_group
GDP category
Natural breaks was used to assign a GDP category (high/low) to each country and year




"ghg_timeseries_by_annex" provides annual emissions totals for Annex-1 (developed) versus non-Annex-1 (developing) countries 2015 to 2024. The data were used to investigate temporal emissions trends and whether UNFCCC status influences them. See column name descriptions below. 




Column name 
Description
Units


Year
Year for which annual emissions total is provided 
NA


Annex1
annual GHG emissions total for all Annex-1 countries 
100 ye CO2e


Non-Annex1
annual GHG emissions total for all Annex-1 countries 
100 ye CO2e
DOI: 10.22002/m4z2f-t6m63
title: Hyphomonas EB session14 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-05-22</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-62.0°, 62.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, treated with EB...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-11/rawdata/</p>09may22a_bx200d_014.mrc,  Tilt Series (Pixel Size 0.774 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-11/rawdata/09may22a_bx200d_014.mrc"
        > <i class="download icon"></i> Download </a></p>

        09may22a_bx200d_014_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 245.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-11/3dimage_7606/09may22a_bx200d_014_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gvaym-ty967
title: HIV gag session12 41KX

description: Opti-prep HIV gag shell
description: <strong>Tilt Series Date:</strong> 2009-04-13</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 72.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Virgine; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Opti-prep</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-26/rawdata/</p>09apr13a_b19a_030.mrc,  Tilt Series (Pixel Size 0.512 nm), 570.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-26/rawdata/09apr13a_b19a_030.mrc"
        > <i class="download icon"></i> Download </a></p>

        09apr13a_b19a_030_part.rec,  Reconstruction (Pixel Size 1.024 nm), 293.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-04-13-26/3dimage_7501/09apr13a_b19a_030_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qn1by-p9240
title: Acetonema longum grown on H2CO2

description: Raw data files of Acetonema longum grown on H2CO2
description: <strong>Tilt Series Date:</strong> 2009-03-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, -60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in standard media </p>
<strong>Sample Preparation:</strong>  quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-11-7/rawdata/</p>09mar11a_pos1Alongum_007.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-11-7/rawdata/09mar11a_pos1Alongum_007.mrc"
        > <i class="download icon"></i> Download </a></p>

        cell7_full.rec,  Reconstruction (Pixel Size 1.922 nm), 461.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-11-7/3dimage_6409/cell7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qarvp-j6k74
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grow in LB</p>
<strong>Sample Preparation:</strong> Polara</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-19/rawdata/</p>3267c0019.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-19/rawdata/3267c0019.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267c0019_full.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-19/3dimage_16198/3267c0019_full.rec"
        > <i class="download icon"></i> Download </a></p>