cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10289408
title: Porosity variation statistics of rock samples from Experimental study on repair of fractured rock mass by microbial induction technology

description: Data of rock sample porosity change analysis
DOI: 10.6084/m9.figshare.10289408.v1
title: Porosity variation statistics of rock samples from Experimental study on repair of fractured rock mass by microbial induction technology

description: Data of rock sample porosity change analysis
DOI: 10.6084/m9.figshare.10289399
title: Permeability variation statistics of fractured rock samples from Experimental study on repair of fractured rock mass by microbial induction technology

description: Data of rock sample permeability change analysis
DOI: 10.6084/m9.figshare.10289396
title: Stress and strain data of rock samples at different periods from Experimental study on repair of fractured rock mass by microbial induction technology

description: Uniaxial compressive strength of samples at different time
DOI: 10.6084/m9.figshare.10289399.v1
title: Permeability variation statistics of fractured rock samples from Experimental study on repair of fractured rock mass by microbial induction technology

description: Data of rock sample permeability change analysis
DOI: 10.6084/m9.figshare.10289405.v1
title: T2 spectrum value of rock samples at different periods from Experimental study on repair of fractured rock mass by microbial induction technology

description: T2 spectral value obtained by NMR test
DOI: 10.6084/m9.figshare.10289396.v1
title: Stress and strain data of rock samples at different periods from Experimental study on repair of fractured rock mass by microbial induction technology

description: Uniaxial compressive strength of samples at different time
DOI: 10.6084/m9.figshare.10289162
title: Ciona Calcium Imaging Dataset Nov 2019

description: <b>Please see the attached README file for more details</b><br><b></b><b><br></b><b>Overview<br></b><br>This dataset contains calcium imaging data from various genetically defined neuronal populations in the brain of Ciona intestinalis. It also contains data from non-neuronal cells, the epidermis (CesA cells) and Trunk Lateral cells (HNK-1 cells)<br><br>The data, analysis procedures, and interactive figures are all functionally linked and encapsulated in a project that can be easily explored with our free open source software platform (http://www.mesmerizelab.org/). The raw data & analysis procedures are fully transparent and traceable at the level of individual datapoints (see the "Interactive Heatmaps" example at the bottom of this page: http://www.mesmerizelab.org/Overview.html).<br><br>The dataset is structured as a Mesmerize project. The easiest way to get Mesmerize is to install the snap package. Instructions are here: http://www.mesmerizelab.org/user_guides/installation.html<br><br><b>Opening the dataset</b><br><br>The dataset is compressed as a tar archive with gzip compression. The decompressed size is 477.6 GB so make sure you have sufficient space on your filesystem. Decompression can take a while, you may get better performance if you read from a different filesystem than the one that you write to. With a 2019 i7/Ryzen 7 CPU it should take ~30 minutes if the filesystem is on an SSD. I recommend using a fast filesystem to store the decompressed data since some of the image sequences are large.<br><br><b>pigz</b> should be faster for decompression compared to standard tar. For Ubuntu & Debian based distros you can install pigz through apt. For other distros please check your repositories.<br><br>sudo apt install pigz<br><br>On Mac OSX you can install pigz through brew. See this: https://brewinstall.org/Install-pigz-on-Mac-with-Brew/<br><br>Decompressing:<br><code>pigz -dc ciona_cell_types_nov11_2019_chatzigeorgiou_lab.tar.gz | tar -xf</code><code><br></code>If you cannot install pigz you can decompress with tar. This may take a long time.<br><br><code>tar xvzf ciona_cell_types_nov11_2019_chatzigeorgiou_lab.tar.gz</code><br><b>The archive will unpack into a directory called "share", just navigate to <i>"share/data/temp/kushal/" </i>and you will see the actual dataset directory.</b><br>Once decompressed, you can explore the dataset using Mesmerize. Simply open the Project Directory through the Mesmerize Welcome Window (the window that you are presented with when you launch Mesmerize). You will see the available analysis flowcharts and plots similar to this: http://www.mesmerizelab.org/Overview.html#welcome-window<br><b>See the attached README file for more details</b>
DOI: 10.6084/m9.figshare.10289096
title: Data_OCEAN_SENTINEL_Weimerskirch_et_al_2018_2019

description: The file contains traking data of albatrosses from Crozet, Kerguelen, Amsterdam and Marion Islands, including identity, location, presence of vessels and detection of radar emission. The data are use in various papers. For additional information contact henri.weimerskirch@cebc.cnrs.fr or corbeau.alexandre@gmail.com<br>
DOI: 10.6084/m9.figshare.10288715
title: Peñarrubia, Navarro-Soria, Fenollar-Cortés ADHD Foster children.sav

description: ADHD symptomatology, executive and cognitive performance were examined in 102 ADHD-diagnosed children aged 6- to 12-years-old, divided into two groups: 59 children living with non-relative foster families, and 43 children not involved with protection services. All the foster children had lived with their biological families and in residential care before being placed with non-relative foster families.
DOI: 10.6084/m9.figshare.10288550
title: Raw data of T1 and T15

description: Raw data of temperature loggers 1 and 15 of the manuscript. The first column is year of day (2018), the second column is in situ temperature when the loggers were at 0.5 m above the bottom.
DOI: 10.6084/m9.figshare.10288715.v1
title: Peñarrubia, Navarro-Soria, Fenollar-Cortés ADHD Foster children.sav

description: ADHD symptomatology, executive and cognitive performance were examined in 102 ADHD-diagnosed children aged 6- to 12-years-old, divided into two groups: 59 children living with non-relative foster families, and 43 children not involved with protection services. All the foster children had lived with their biological families and in residential care before being placed with non-relative foster families.
DOI: 10.6084/m9.figshare.10288496
title: exp 2 (spanish data) 'emotional faces and biological motion study'

description: raw data obtained from spain for experiment 2. The demographic spreadsheet is included.
DOI: 10.6084/m9.figshare.10288498
title: exp 2 (polish data) 'emotional faces and biological motion study'

description: raw data obtained from poland for experiment 2. The demographic spreadsheet is included.
DOI: 10.6084/m9.figshare.10288550.v1
title: Raw data of T1 and T15

description: Raw data of temperature loggers 1 and 15 of the manuscript. The first column is year of day (2018), the second column is in situ temperature when the loggers were at 0.5 m above the bottom.
DOI: 10.6084/m9.figshare.10288498.v1
title: exp 2 (polish data)

description: raw data obtained from poland for experiment 2. The demographic spreadsheet is included.
DOI: 10.6084/m9.figshare.10288496.v2
title: exp 2 (spanish data) 'emotional faces and biological motion study'

description: raw data obtained from spain for experiment 2. The demographic spreadsheet is included.
DOI: 10.6084/m9.figshare.10288496.v1
title: exp 2 (spanish data)

description: raw data obtained from spain for experiment 2. The demographic spreadsheet is included.
DOI: 10.6084/m9.figshare.10288316
title: Dataset for brown carbon absorption estimation

description: Ths data file named 'dN_dlogD_rBC_10min.csv' contains the number size distribution (dN/dlogD) of refractory black carbon measured using a single-particle soot photometer (SP2) in urban Beijing during a period from 16 Feb. 2014 to 15 Mar. 2014. The dataset is recorded line by line at a time resolution of 10 min. The first line of this file is the header line. There are 204 columns for the data file with the first 5 columns indicating the date and time of each record and the following 199 columns representing the dN/dlogD values at corresponding diameter. The dN/dlogD values with diameter lower than 70 nm and larger than 600 nm were excluded in the analysis according to the detection limit of SP2.The data file named 'MieAbs_3hMoveAVG_Base950nm_C3.5_RI1.50_all.CSV' stored the absorption coefficient with a time resolution of 1 hour. The record is stored line by line initial with a header line. The first 4 columns indicate the date and time of each record. The following 7 columns are the measured absorption coefficient at 7 wavelengths (370, 470, 520, 590, 660, 880, 950 nm) using an aethalometer (AE31), then followed by the bare BC absorption coefficient at the 7 wavelengths and coated BC absorption coefficient at the 7 wavelengths. The last column represents the mean relative coating thickness of BC particles.<br>
DOI: 10.6084/m9.figshare.10288308
title: On apparent mass-independent fractionation (MIF) signatures from phase partitioning at equilibrium

description: The chance of apparent isotope anomalies either in closed systems at equilibrium or during Rayleigh processes is investigated. The term ‘apparent’ is chosen to highlight that only mass-dependent fractionation (MDF) processes are considered. A goal is finding analytical expressions that could be used for dealing with the complexity of real systems. For example, the formula for calculating the isotopic fractionation in systems with any desired number of phases involved is identified. Terrestrial samples could exhibit artificially low MIF signatures because Δ is not invariant with the choice of the reference material. An alternative parameter Δ* only depending on β is therefore introduced. The potential transfer of sample points in a three-isotope plot to parallel lines during reversible processes is also investigated. Larger apparent anomalies are expected in systems lacking an infinite reservoir and for large enrichment factors. Pyrite is stable beyond the conditions for a reducing environment and MIF signatures from Archaean sediments could be compatible with reversible processes involving oxidised species. Isotope anomalies in pyrite from the Dresser Formation, Australia, are compatible with post-depositional incorporation of 2–5% sulphur of atmospheric origin. Overall, observed delta values could mainly be related to changes in the local absolute isotope abundances.
DOI: 10.6084/m9.figshare.10288316.v1
title: Dataset for brown carbon absorption estimation

description: Ths data file named 'dN_dlogD_rBC_10min.csv' contains the number size distribution (dN/dlogD) of refractory black carbon measured using a single-particle soot photometer (SP2) in urban Beijing during a period from 16 Feb. 2014 to 15 Mar. 2014. The dataset is recorded line by line at a time resolution of 10 min. The first line of this file is the header line. There are 204 columns for the data file with the first 5 columns indicating the date and time of each record and the following 199 columns representing the dN/dlogD values at corresponding diameter. The dN/dlogD values with diameter lower than 70 nm and larger than 600 nm were excluded in the analysis according to the detection limit of SP2.The data file named 'MieAbs_3hMoveAVG_Base950nm_C3.5_RI1.50_all.CSV' stored the absorption coefficient with a time resolution of 1 hour. The record is stored line by line initial with a header line. The first 4 columns indicate the date and time of each record. The following 7 columns are the measured absorption coefficient at 7 wavelengths (370, 470, 520, 590, 660, 880, 950 nm) using an aethalometer (AE31), then followed by the bare BC absorption coefficient at the 7 wavelengths and coated BC absorption coefficient at the 7 wavelengths. The last column represents the mean relative coating thickness of BC particles.<br>
DOI: 10.6084/m9.figshare.10288308.v1
title: On apparent mass-independent fractionation (MIF) signatures from phase partitioning at equilibrium

description: The chance of apparent isotope anomalies either in closed systems at equilibrium or during Rayleigh processes is investigated. The term ‘apparent’ is chosen to highlight that only mass-dependent fractionation (MDF) processes are considered. A goal is finding analytical expressions that could be used for dealing with the complexity of real systems. For example, the formula for calculating the isotopic fractionation in systems with any desired number of phases involved is identified. Terrestrial samples could exhibit artificially low MIF signatures because Δ is not invariant with the choice of the reference material. An alternative parameter Δ* only depending on β is therefore introduced. The potential transfer of sample points in a three-isotope plot to parallel lines during reversible processes is also investigated. Larger apparent anomalies are expected in systems lacking an infinite reservoir and for large enrichment factors. Pyrite is stable beyond the conditions for a reducing environment and MIF signatures from Archaean sediments could be compatible with reversible processes involving oxidised species. Isotope anomalies in pyrite from the Dresser Formation, Australia, are compatible with post-depositional incorporation of 2–5% sulphur of atmospheric origin. Overall, observed delta values could mainly be related to changes in the local absolute isotope abundances.
DOI: 10.6084/m9.figshare.10288288
title: MOESM4 of Accurate detection of KRAS, NRAS and BRAF mutations in metastatic colorectal cancers by bridged nucleic acid-clamp real-time PCR

description: Additional file 4: Table S1. Threshold cycle values of real-time PCR using BNA-clamp PCR method.
DOI: 10.6084/m9.figshare.10288288.v1
title: MOESM4 of Accurate detection of KRAS, NRAS and BRAF mutations in metastatic colorectal cancers by bridged nucleic acid-clamp real-time PCR

description: Additional file 4: Table S1. Threshold cycle values of real-time PCR using BNA-clamp PCR method.
DOI: 10.6084/m9.figshare.10288266
title: MOESM10 of Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

description: Additional file 10: Table S6. SRA accessions.
DOI: 10.6084/m9.figshare.10288266.v1
title: MOESM10 of Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

description: Additional file 10: Table S6. SRA accessions.
DOI: 10.6084/m9.figshare.10288240
title: MOESM1 of Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report

description: Additional file 1: The most significant hits of HPgV sequence.
DOI: 10.6084/m9.figshare.10288240.v1
title: MOESM1 of Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report

description: Additional file 1: The most significant hits of HPgV sequence.
DOI: 10.6084/m9.figshare.10288230
title: MOESM4 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 4: Table S3. Genomic coordinate (mm10 based) of pCSM loci identified from bulk brain methylomes.
DOI: 10.6084/m9.figshare.10288230.v1
title: MOESM4 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 4: Table S3. Genomic coordinate (mm10 based) of pCSM loci identified from bulk brain methylomes.
DOI: 10.6084/m9.figshare.10288220
title: MOESM2 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 2: Table S2. Genomic coordinate (mm10 based) of pCSM loci identified from single-cell brain methylomes.
DOI: 10.6084/m9.figshare.10288220.v1
title: MOESM2 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 2: Table S2. Genomic coordinate (mm10 based) of pCSM loci identified from single-cell brain methylomes.
DOI: 10.6084/m9.figshare.10288214
title: MOESM1 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 1: Table S1. A summary of data source for datasets derived from mouse brain and sorted neurons.
DOI: 10.6084/m9.figshare.10288214.v1
title: MOESM1 of Virtual methylome dissection facilitated by single-cell analyses

description: Additional file 1: Table S1. A summary of data source for datasets derived from mouse brain and sorted neurons.
DOI: 10.6084/m9.figshare.10288166
title: MOESM10 of Representation of people with comorbidity and multimorbidity in clinical trials of novel drug therapies: an individual-level participant data analysis

description: Additional file 10. Comorbidity-counts-for-trials-and-primary-care.pdf: Summary comorbidity counts.
DOI: 10.6084/m9.figshare.10288160
title: MOESM4 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 4: Table S3. Direct comparison of Kalbfleisch and TAMPfinder for potential tail-anchored proteins in H. sapiens using UniProt data of single-pass IV membrane proteins.
DOI: 10.6084/m9.figshare.10288166.v1
title: MOESM10 of Representation of people with comorbidity and multimorbidity in clinical trials of novel drug therapies: an individual-level participant data analysis

description: Additional file 10. Comorbidity-counts-for-trials-and-primary-care.pdf: Summary comorbidity counts.
DOI: 10.6084/m9.figshare.10288160.v1
title: MOESM4 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 4: Table S3. Direct comparison of Kalbfleisch and TAMPfinder for potential tail-anchored proteins in H. sapiens using UniProt data of single-pass IV membrane proteins.
DOI: 10.6084/m9.figshare.10288156
title: MOESM3 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 3: Table S2. TAMPfinder datasets for H. sapiens, A. thaliana, and S. cerevisiae.
DOI: 10.6084/m9.figshare.10288156.v1
title: MOESM3 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 3: Table S2. TAMPfinder datasets for H. sapiens, A. thaliana, and S. cerevisiae.
DOI: 10.6084/m9.figshare.10288146
title: MOESM1 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 1: Table S1. List of all proteins used for training and test set.
DOI: 10.6084/m9.figshare.10288146.v1
title: MOESM1 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 1: Table S1. List of all proteins used for training and test set.
DOI: 10.6084/m9.figshare.10288134
title: MOESM10 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 10: Table S4. Performance of TAMPfinder program in comparison with Kalbfleisch et al. Both exclusive and common membership was analyzed in terms of GO annotation.
DOI: 10.6084/m9.figshare.10288134.v1
title: MOESM10 of Genome-wide analysis of Homo sapiens, Arabidopsis thaliana, and Saccharomyces cerevisiae reveals novel attributes of tail-anchored membrane proteins

description: Additional file 10: Table S4. Performance of TAMPfinder program in comparison with Kalbfleisch et al. Both exclusive and common membership was analyzed in terms of GO annotation.
DOI: 10.6084/m9.figshare.10288094
title: MOESM5 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 5: Table S10. Real-time qPCR data for 17 major genes involved in wax accumulation selected from literature.
DOI: 10.6084/m9.figshare.10288088
title: MOESM4 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 4: Table S9. Real-time qPCR data for selected DEGs. Fold change waxy /non-waxy is shown as mean of the normalized relative quantities Â± SEM.
DOI: 10.6084/m9.figshare.10288094.v1
title: MOESM5 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 5: Table S10. Real-time qPCR data for 17 major genes involved in wax accumulation selected from literature.
DOI: 10.6084/m9.figshare.10288082
title: MOESM3 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 3: Table S8. Predicted DEGs in ‘Nocturne’ x US 1212 population.
DOI: 10.6084/m9.figshare.10288088.v1
title: MOESM4 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 4: Table S9. Real-time qPCR data for selected DEGs. Fold change waxy /non-waxy is shown as mean of the normalized relative quantities Â± SEM.
DOI: 10.6084/m9.figshare.10288078
title: MOESM2 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 2: Table S7. Predicted DEGs in ‘Nocturne’ x T 300 population.
DOI: 10.6084/m9.figshare.10288082.v1
title: MOESM3 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 3: Table S8. Predicted DEGs in ‘Nocturne’ x US 1212 population.
DOI: 10.6084/m9.figshare.10288078.v1
title: MOESM2 of Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations

description: Additional file 2: Table S7. Predicted DEGs in ‘Nocturne’ x T 300 population.
DOI: 10.6084/m9.figshare.10288064
title: MOESM3 of Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes

description: Additional file 3. This file shows the results of the evaluation of UMLS CUI pairs with BMJ Best Practice content (i.e. human medicine), i.e. the file contains the 3-tuples (target concept, candidate concept, validation label) for the VetCN dataset (worksheet “VetCN”) and the PMSB dataset (worksheet “PMSB”). The worksheet “signatures” has the ontological signature (i.e. a list of SNOMED CT identifiers) for each of the 11 medical conditions that are the subject of this study. The worksheet “q One Health” shows the number of UMLS CUI pairs validated with BMJ Best Practice content (i.e. human medicine) for each of the 27 UMLS Semantic Types that participates in the SPARQL SELECT query q1VU or q2VU or q3VU (i.e. One Health queries from Table 11).