cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25582/data.2021-11.2375863/2287052
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2021-09.2314363/2287053
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-11.2375813/2287054
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-09.2606259/2287055
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.19451005.v1
title: Additional file 3 of Identification of blood-based key biomarker and immune infiltration in Immunoglobulin A nephropathy by comprehensive bioinformatics analysis and a cohort validation

description: Additional file 3: Supp3-Share up- and downregulated genes. Detailed information of the shared up- and downregulated genes.
DOI: 10.6084/m9.figshare.19451011
title: Additional file 5 of Identification of blood-based key biomarker and immune infiltration in Immunoglobulin A nephropathy by comprehensive bioinformatics analysis and a cohort validation

description: Additional file 5: Supp5-eGFR and proteinuria correlated down genes. Detailed information of the eGFR and proteinuria correlated downregulated genes
DOI: 10.25582/data.2022-09.2608775/2287056
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.13685590
title: Prognostic Value and Molecular Mechanisms of Proteasome 26S Subunit, Non-ATPase Family Genes for Pancreatic Ductal Adenocarcinoma Patients after Pancreaticoduodenectomy

description: <b>Objective:</b> Pancreatic cancer (PC) is an extremely malignant tumor with similar morbidity and mortality and lack of an effective treatment. This study explored the prognostic value and molecular mechanisms of proteasome 26S subunit, non-ATPase (PSMD) family genes in pancreatic ductal adenocarcinoma (PDAC). <b>Methods:</b> Survival analyses were performed to elucidate the relationship between prognosis and the level of PSMD expression. ROC curves and nomograms were constructed to predict the prognosis. A bioinformatics analysis was used to explore the co-expression and complex interaction networks of PSMDs. The potential mechanisms were further explored via gene set enrichment analysis (GSEA). <b>Results:</b> We find high levels of PSMD6, PSMD9, PSMD11, and PSMD14 expression were significantly associated with a poorer OS. High PSMD6 and PSMD11 expression was associated with a poorer relapse-free survival (RFS). A risk score model was constructed based on prognosis-related genes. The area under ROC curves (AUC) was 53.3%, 59.3%, and 62.9% for 1-, 2-, 3 years, respectively. <b>Conclusion:</b> GSEA revealed that PSMD6 and PSMD11 play a role in PDAC through various biological processes and signaling pathways, including TP53, CDKN2A, MYC pathway, DNA repair, KRAS, cell cycle checkpoint, NIK, NF-κB signaling pathway, and proteasomes. This study demonstrated that PSMD6 and PSMD11 could serve as a potential prognostic and diagnostic biomarkers for patients with early-stage PDAC after pancreaticoduodenectomy.
DOI: 10.6084/m9.figshare.19451023.v1
title: Additional file 9 of Identification of blood-based key biomarker and immune infiltration in Immunoglobulin A nephropathy by comprehensive bioinformatics analysis and a cohort validation

description: Additional file 9: Supp9-correlation map results. Detailed information of the correlation parameters from CIBERSORT results.
DOI: 10.25582/data.2022-10.2615646/2287057
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-08.2304604/2287058
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.16829560
title: Additional file 1 of Targeting CDC7 potentiates ATR-CHK1 signaling inhibition through induction of DNA replication stress in liver cancer

description: Additional file 1: Table S1. Kinome screen data for HCC cells.
DOI: 10.25582/data.2022-01.2417352/2287059
title: Data for EMSL Project 51834 from January 2022
DOI: 10.6084/m9.figshare.12109509.v1
title: Additional file 2 of Comparative transcriptome analysis of two contrasting wolfberry genotypes during fruit development and ripening and characterization of the LrMYB1 transcription factor that regulates flavonoid biosynthesis

description: Additional file 2 DEGs in two Lycium species at three developmental stages. The file showing differentially expressed genes between BF and RF at three developmental stages.
DOI: 10.25582/data.2023-01.2718020/2287060
title: Data for EMSL Project 51834 from January 2023
DOI: 10.6084/m9.figshare.12109515
title: Additional file 4 of Comparative transcriptome analysis of two contrasting wolfberry genotypes during fruit development and ripening and characterization of the LrMYB1 transcription factor that regulates flavonoid biosynthesis

description: Additional file 4. KEGG pathway annotations of DEGs at three developmental stages.
DOI: 10.6084/m9.figshare.7392551
title: A Best Evidence Medical Education (BEME) systematic review of: What works best for health professions students using mobile (hand-held) devices for educational support on clinical placements? BEME Guide No. 52

description: <b>Background:</b> Ingrained assumptions about clinical placements (clerkships) for health professions students pursuing primary basic qualifications might undermine best educational use of mobile devices. <b>Question:</b> What works best for health professions students using mobile (hand-held) devices for educational support on clinical placements? <b>Methods:</b> A Best Evidence Medical Education (BEME) effectiveness-review of “justification” complemented by “clarification” and “description” research searched: <i>MEDLINE, Educational Resource Information Center, Web of Science, Cumulative Index to Nursing and Allied Health Literature, PsycInfo, Cochrane Central, Scopus</i> (1988–2016). Reviewer-pairs screened titles/abstracts. One pair coded, extracted, and synthesized evidence, working within the pragmatism paradigm. <b>Summary of results:</b> From screening 2279 abstracts, 49 articles met inclusion-criteria, counting four systematic reviews for context. The 45 articles of at least Kirkpatrick K2 primary research mostly contributed K3 (39/45, 86.7%), mixed methods (21/45, 46.7%), and S3-strength (just over one-half) evidence. Mobile devices particularly supported student: assessment; communication; clinical decision-making; logbook/notetaking; and accessing information (in about two-thirds). Informal and hidden curricula included: <i>concerns about:</i> disapproval; confidentiality and privacy; security;—<i>distraction by</i> social connectivity and busy clinical settings; and <i>mixed messages about</i> policy. <b>Discussion and conclusion:</b> This idiosyncratic evidence-base of modest robustness suggested that mobile devices provide potentially powerful educational support on clinical placement, particularly with student transitions, metalearning, and care contribution. Explicit policy must tackle informal and hidden curricula though, addressing concerns about transgressions.
DOI: 10.25582/data.2021-11.2384640/2287061
title: Data for EMSL Project 51834 from November 2021
DOI: 10.6084/m9.figshare.16305387.v1
title: Additional file 3 of Integrative analysis and experiments to explore angiogenesis regulators correlated with poor prognosis, immune infiltration and cancer progression in lung adenocarcinoma

description: Additional file 3: Table S2. Univariate and multivariate Cox regression analyses of the prognostic genes to OS in LUAD patients.
DOI: 10.25582/data.2022-09.2609801/2287062
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.16829588.v1
title: Additional file 4 of Genetic spectrum and clinical features in a cohort of Chinese patients with autosomal recessive cerebellar ataxias

description: Additional file 4: Table S2. Clinical features of ARSACS patients in China.
DOI: 10.6084/m9.figshare.16829588
title: Additional file 4 of Genetic spectrum and clinical features in a cohort of Chinese patients with autosomal recessive cerebellar ataxias

description: Additional file 4: Table S2. Clinical features of ARSACS patients in China.
DOI: 10.6084/m9.figshare.16829585.v1
title: Additional file 3 of Genetic spectrum and clinical features in a cohort of Chinese patients with autosomal recessive cerebellar ataxias

description: Additional file 3: Table S1. The scale score follow-up of case 15 with ADCK3 mutation after supplementation with COQ10.
DOI: 10.6084/m9.figshare.16305384.v1
title: Additional file 2 of Integrative analysis and experiments to explore angiogenesis regulators correlated with poor prognosis, immune infiltration and cancer progression in lung adenocarcinoma

description: Additional file 2: Table S1. Angiogenesis related genes.
DOI: 10.25582/data.2022-10.2615483/2287063
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-09.2608788/2287064
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-08.2305278/2287065
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.23119009
title: Additional file 1 of TMT proteomics analysis reveals the mechanism of bleomycin-induced pulmonary fibrosis and effects of Ginseng honeysuckle superfine powdered tea

description: Additional file 1. Protein identification table.
DOI: 10.25582/data.2021-12.2404815/2287066
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-09.2609391/2287067
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-09.2329610/2287068
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-04.2478998/2287069
title: Data for EMSL Project 51834 from April 2022
DOI: 10.25582/data.2022-10.2616256/2287070
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-09.2609810/2287071
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-08.2305252/2287072
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2021-11.2389479/2287073
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2021-12.2390537/2287074
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-10.2363869/2287075
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2022-09.2606622/2287076
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-09.2322462/2287077
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-09.2607538/2287078
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-09.2608750/2287079
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-09.2610581/2287080
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-10.2614517/2287081
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-08.2305234/2287082
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2022-10.2613912/2287083
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-01.2417158/2287084
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2021-09.2318206/2287085
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2327238/2287086
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-12.2400033/2287087
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-09.2332497/2287088
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-10.2621630/2287089
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-08.2303165/2287090
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2022-09.2609226/2287091
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-10.2620860/2287092
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-10.2361595/2287093
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2022-01.2417121/2287094
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2021-12.2399740/2287095
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-10.2617124/2287096
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-09.2325781/2287097
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-11.2389132/2287098
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-10.2617476/2287099
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-10.2617180/2287100
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-12.2390486/2287101
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-10.2621155/2287102
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-10.2622269/2287103
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-09.2605752/2287104
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-09.2315673/2287105
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-10.2361273/2287106
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2021-11.2380631/2287107
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-10.2617137/2287108
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-04.2478494/2287109
title: Data for EMSL Project 51834 from April 2022
DOI: 10.25582/data.2022-09.2610611/2287110
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.19451103.v1
title: Additional file 10 of Genome-wide identification and characterization of PdbHLH transcription factors related to anthocyanin biosynthesis in colored-leaf poplar (Populus deltoids)

description: Additional file 10: Table S4. The gene ontology (GO) analysis of PdbHLH genes.
DOI: 10.25582/data.2021-09.2322540/2287111
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-12.2404938/2287112
title: Data for EMSL Project 51834 from December 2021
DOI: 10.6084/m9.figshare.13685824
title: Snake slough in birds’ nests acts as a nest predator deterrent

description: The use of snake slough as nest material by birds is considered an adaptive behavior to avoid nest predation. Here, we conducted predation experiments to test the hypothesis that the snake slough in nests of crested mynas (<i>Acridotheres cristatellus</i>) had anti-predatory effects. We put snake slough and white-rumped munia (<i>Lonchura striata</i>) eggs in the nest boxes to compare egg predation by Swinhoe’s striped squirrels (<i>Tamiops swinhoei</i>), one of the main predators of cavity-nesting birds. In addition, we conducted experiments to examine if Swinhoe’s striped squirrels identified the snake sloughs in the nest by vision or olfaction, and if the length of snake sloughs has effect on the predation rate. Our results showed that in the anti-predatory experiment, the egg predation rate (on days 3, 6) and the predation rate at which the squirrels first arrived the nest box were significantly lower in the experimental group than in the control group. In the olfaction experiment, there was no significant difference in both the predation rate (on days 1, 3, 6) and the predation rate at which the squirrels first arrived the nest box between the two groups. In the vision experiment, the predation rate at which the squirrels first arrived the nest box was significantly lower in the experimental group (hung snake slough) than in the control group (hung cotton strip). In the slough length experiment, the length of snake slough did not have a significant effect on the predation rate. These results suggest that the snake sloughs in bird nests can effectively deter nest predators, mainly via visual effect. Our study provided strong experimental evidence for the hypothesis that snake slough in birds’ nests acts as a nest predator deterrent.
DOI: 10.25582/data.2021-09.2322535/2287113
title: Data for EMSL Project 51834 from September 2021
DOI: 10.6084/m9.figshare.19451103
title: Additional file 10 of Genome-wide identification and characterization of PdbHLH transcription factors related to anthocyanin biosynthesis in colored-leaf poplar (Populus deltoids)

description: Additional file 10: Table S4. The gene ontology (GO) analysis of PdbHLH genes.
DOI: 10.25582/data.2022-01.2417767/2287114
title: Data for EMSL Project 51834 from January 2022
DOI: 10.6084/m9.figshare.13685839
title: Carbon Monitor: Global daily CO2 emissions from fossil fuel combustion and cement production 2020

description: <i>Carbon Monitor is a near real-time dataset for daily CO2 emissions with global coverage from 6 main sectors (power, industry, ground transportation, aviation, residential and international shipping).</i><br><i>Here, we provide the whole year data of 2019 and 2020.<br>Visit our website for more information: <i>https://carbonmonitor.org</i></i>
DOI: 10.25582/data.2021-08.2304546/2287115
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2022-09.2609239/2287116
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.16305387
title: Additional file 3 of Integrative analysis and experiments to explore angiogenesis regulators correlated with poor prognosis, immune infiltration and cancer progression in lung adenocarcinoma

description: Additional file 3: Table S2. Univariate and multivariate Cox regression analyses of the prognostic genes to OS in LUAD patients.
DOI: 10.25582/data.2022-09.2607283/2287117
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-09.2612332/2287118
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-09.2322390/2287119
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2326429/2287120
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-12.2411286/2287121
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-01.2417182/2287122
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2021-09.2318125/2287123
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2320300/2287124
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-09.2609203/2287125
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-09.2610450/2287126
title: Data for EMSL Project 51834 from September 2022
DOI: 10.4121/858e4b36-895b-4c84-928a-d1cdcf0920d6
title: Supplementary data for the paper 'External human-machine interfaces: Gimmick or necessity?'

description: The last few years have seen a wealth of research on external human–machine interfaces (eHMIs). It has been argued that eHMIs are vital because they fill the social interaction void that arises with the introduction of automated vehicles (AVs). However, there is still much discussion about whether eHMIs are needed. The present article surveys arguments for and against eHMIs. We list three arguments against eHMIs: (1) Implicit communication dominates pedestrian-AV interaction, and there is no social interaction void to be filled, (2) There is a large variety of eHMI concepts and a lack of standardization and consensus, and (3) eHMIs may elicit various negative effects such as distraction, confusion, and overreliance. Next, we present five reasons why eHMIs may be useful or required: (1) eHMIs can make planned actions of the AV visible, thereby increasing the efficiency of pedestrian-AV interaction, (2) Participants value an eHMI compared to no eHMI, (3) eHMIs do not have to be limited to showing instructions or the AV’s planned actions; showing the AV mode or the AV’s cooperative or detection capabilities are other uses of eHMIs, (4) Recent research shows that driver eye contact is important in traffic, and a social interaction void thus exists, and (5) A large portion of pedestrian-vehicle accidents in current traffic is caused by unclear implicit communication, suggesting that pedestrians may benefit from explicit eHMIs. It is hoped that this article contributes to the critical discussion of whether eHMIs are needed and how they should be designed.
DOI: 10.6084/m9.figshare.24603504
title: Additional file 1 of Radiation impacts gene redundancy and biofilm regulation of cryoconite microbiomes in Northern Hemisphere glaciers

description: Additional file 1. Dataset Table 1–4.
DOI: 10.6084/m9.figshare.24603504.v1
title: Additional file 1 of Radiation impacts gene redundancy and biofilm regulation of cryoconite microbiomes in Northern Hemisphere glaciers

description: Additional file 1. Dataset Table 1–4.
DOI: 10.6084/m9.figshare.25158242.v1
title: Supplementary Material for: Mortality of Peritoneal Dialysis versus Hemodialysis in Older Adults: An Updated Systematic Review and Meta-Analysis

description: Introduction. The optimal choice of dialysis modality remains contentious in older adults threatened by advanced age and high risk of comorbidities.
Methods. We conducted a systematic review and meta-analysis of cohort and case-control studies to assess mortality risk between peritoneal dialysis (PD) and hemodialysis (HD) in older adults using PubMed, Embase, and the Cochrane Library database from inception to June 1, 2022. The outcome of interest is all-cause mortality.
Results. Thirty-one eligible studies with &gt;774,000 older patients were included. Pooled analysis showed that PD had a higher mortality rate than HD in older dialysis population (HR 1.17, 95% CI 1.10-1.25). When stratified by co-variables, our study showed an increased mortality risk of PD versus HD in older patients with diabetes mellitus or comorbidity, who underwent longer dialysis duration (more than 3 years), or who started dialysis before 2010. However, definitive conclusions were constrained by significant heterogeneity.
Conclusion. From the survival point of view, caution is needed to employ peritoneal dialysis for long-term use in older populations with diabetes mellitus or comorbid conditions. However, a tailored treatment choice needs to take account of what matters to older adults at an individual level, especially in the context of limited survival improvements and loss of quality of life. Further research is still awaited to conclude this topic.
DOI: 10.6084/m9.figshare.19451188.v1
title: Additional file 1 of A three-gene cluster in Trichoderma reesei reveals a potential role of dmm2 in DNA repair and cellulase production

description: Additional file 1: Genome-wide surveys of the homologues of the three-gene cluster in 324 sequenced fungal genomes.
DOI: 10.6084/m9.figshare.19451188
title: Additional file 1 of A three-gene cluster in Trichoderma reesei reveals a potential role of dmm2 in DNA repair and cellulase production

description: Additional file 1: Genome-wide surveys of the homologues of the three-gene cluster in 324 sequenced fungal genomes.
DOI: 10.6084/m9.figshare.21546724
title: Additional file 1 of Downregulation of zinc finger protein 71 in laryngeal squamous cell carcinoma tissues and its potential molecular mechanism and clinical significance: a study based on immunohistochemistry staining and data mining

description: Additional file 1: Table S1. Raw data for IHC staining.