cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a9ktgt
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coreopsis suaveolens Sherff"
 ]
}

 The dataset includes 19 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032983-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnhc8h
title: Occurrence Download

description: A dataset containing 35450 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Geometry POLYGON((-84.57184 41.28416,-85.16107 38.47122,-82.4113 33.76702,-74.55481 36.18081,-67.02568 44.16902,-65.97814 46.063,-69.31715 49.57796,-84.57184 41.28416))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "Year 2009-2021"
 ]
}

 The dataset includes 35450 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061003-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeyuah
title: Occurrence Download

description: A dataset containing 2142 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Gipuzkoako Foru Aldundiaren Landareen Germoplama Bankua / Banco de Germoplasma Vegetal de la Diputación Foral de Gipuzkoa"
 ]
}

 The dataset includes 2142 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048869-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecnkj3
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Samyda yucatanensis Standl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 172 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024778-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pypz6n
title: Occurrence Download

description: A dataset containing 1005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-499.0",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 1005 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061013-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4yzhe
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lachesis mutus Daudin, 1803",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019289-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8txzu
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phyllobates bicolor Duméril & Bibron, 1841"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058830-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8371700
title: MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees

description: We present a longitudinal Multi-Sensor dataset with Phenotypic trait measurements from honey Bees (MSPB). Data were continuously collected between May-2020 and April-2021 from 53 hives located at two apiaries in Québec, Canada. The sensor data included audio features, temperature, and relative humidity. The phenotypic measurements contained beehive population, number of brood cells (eggs, larva and pupa), Varroa destructor infestation levels, defensive and hygienic behaviors, honey yield, and winter mortality. Our study is amongst the first to provide a wide variety of phenotypic trait measurements annotated by apicultural science experts, which facilitate a broader scope of analysis on honey bees, such as bee acoustics analysis, multi-modal hive monitoring, queen presence detection, Varroa infection detection, hive population estimation, biological analysis of bees, etc.
Related Info
The data collection process, feature pre-processing, preliminary data analysis, and usage notes can be found in our paper https://arxiv.org/abs/2311.10876
Check the project webpage (https://zhu00121.github.io/MSPB-webpage/) and Github repo (https://github.com/MuSAELab/MSPB) for more information.
Citation
Kindly cite the following paper:
@misc{zhu2023mspb,
     title={MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees},  
     author={Yi Zhu and Mahsa Abdollahi and Ségolène Maucourt and Nico Coallier and Heitor R. Guimarães and Pierre Giovenazzo and Tiago H. Falk},
     year={2023},
     eprint={2311.10876},
     archivePrefix={arXiv},
     primaryClass={eess.AS}
}
Contact
You can contact us at Yi.Zhu@inrs.ca, if you encounter any questions accessing the data.
DOI: 10.15468/dl.w7z3nh
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Podocarpus forrestii Craib & W.W.Sm."
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052776-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hchyey
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Eulipoa wallacei (G.R.Gray, 1861)"
 ]
}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006732-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpkz3x
title: Occurrence Download

description: A dataset containing 1673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1999-2018",
 "Geometry POLYGON((-20.10174 33.35756,8.00872 33.35756,8.00872 44.60756,-20.10174 44.60756,-20.10174 33.35756))",
 "HasCoordinate is true",
 "TaxonKey is Jasione montana L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1673 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004340-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8371699
title: MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees

description: We present a one-year-long Multi-Sensor dataset with Phenotypic trait measurements from honey Bees (MSPB). Data were continuously collected between April-2020 and April-2021 from 53 hives located at two apiaries in Québec, Canada. The sensor data included audio features, temperature, and relative humidity. The phenotypic measurements contained beehive population, number of brood cells (eggs, larva and pupa), Varroa destructor infestation levels, defensive and hygienic behaviors, honey yield, and winter mortality. Our study is amongst the first to provide a wide variety of phenotypic trait measurements annotated by apicultural science experts, which facilitate a broader scope of analysis on honey bees, such as bee acoustics analysis, multi-modal hive monitoring, queen presence detection, Varroa infection detection, hive population estimation, biological analysis of bees, etc.

Related Info

The data collection process, feature pre-processing, preliminary data analysis, and usage notes can be found in our paper https://arxiv.org/abs/2311.10876

Check the project webpage (https://zhu00121.github.io/MSPB-webpage/) and Github repo (https://github.com/MuSAELab/MSPB) for more information.

Citation

Kindly cite the following paper:

@misc{zhu2023mspb,

     title={MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees},  

     author={Yi Zhu and Mahsa Abdollahi and Ségolène Maucourt and Nico Coallier and Heitor R. Guimarães and Pierre Giovenazzo and Tiago H. Falk},

     year={2023},

     eprint={2311.10876},

     archivePrefix={arXiv},

     primaryClass={eess.AS}

}

Contact

You can contact us at Yi.Zhu@inrs.ca, if you encounter any questions accessing the data.
DOI: 10.15468/dl.we7jxa
title: Occurrence Download

description: A dataset containing 5022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis Ruiz & Pav."
 ]
}

 The dataset includes 5022 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063043-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwq83d
title: Occurrence Download

description: A dataset containing 427385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thelypteridaceae"
 ]
}

 The dataset includes 427385 records from 1099 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064893-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3t3fp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga belizensis Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014967-250127130748423/datasets/export for details.
DOI: 10.15468/dl.35g426
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Musculus pygmaeus Glynn, 1964"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014968-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8fp6s
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ceratoides arborescens (Losinsk.) C.P.Tsien & C.G.Ma"
 ]
}

 The dataset includes 101 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014966-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4zqmq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga cabrerae M.Sousa)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014969-250127130748423/datasets/export for details.
DOI: 10.15480/882.14567
title: Metallic Bipolar Plate Production Through Additive Manufacturing: Contrasting MEX/M and PBF-LB/M Approaches

description: The corresponding paper investigates the production of metallic bipolar plates using MEX/M and PBF-LB/M additive manufacturing technologies. Six design variations were fabricated, and the geometric accuracy of both methods was evaluated using 3D scanning technology. To account for dimensional deviations, the shrinkage of MEX/M samples was measured and compensated in the digital models before the comparison. A comparative analysis was conducted based on 20 measurement points per sample, calculating mean values and standard deviations. The results indicate that PBF-LB/M is well-suited for manufacturing complex structures with intricate geometric details, while MEX/M provides a balanced trade-off between accuracy and production efficiency for simpler bipolar plate designs. Consequently, PBF-LB/M is recommended for prototyping and experimental validation of complex geometries, whereas MEX/M is more suitable for prototype production as a preparatory step for mass manufacturing via the MIM process.
DOI: 10.15468/dl.6cddaf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga calcicola M.Sousa)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014971-250127130748423/datasets/export for details.
DOI: 10.15468/dl.pzxk7e
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga calderonii Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014973-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcb35p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notodonta musculus (Kiriakoff, 1963)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014972-250127130748423/datasets/export for details.
DOI: 10.15468/dl.t45yvp
title: Occurrence Download

description: A dataset containing 1159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lotus corniculatus L."
 ]
}

 The dataset includes 1159 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014974-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14808308
title: Dynamic Reconnaissance Operations with UAV Swarms: Adapting to Environmental Changes

description: This repository contains six scenarios and the associated experiments from the journal article Dynamic Reconnaissance Operations with UAV Swarms: Adapting to Environmental Changes. Details about the files can be found in Readme.txt.

This repository contains the six scenarios (d01, d02, …, d06) and their variants (e.g., d01+PMI). Each scenario is stored in its own folder.

Inside each scenario folder, you will find:



A folder labeled AOR containing a text file (e.g., d01.txt) that defines the “Area of Responsibility”. This file lists polygon coordinates.

A Solutions folder, which contains files named in the format solutionXX-YY-ZZZ.txt where:   - XX corresponds to the scenario number (01 to 06)   - YY is the change index (01, 02, sometimes 03)   - ZZZ is the experiment trial number (001 to 100)   Each solution file describes the exact routes for one or more UAVs as a sequence of waypoints. The solutions demonstrate how the UAVs navigate within the defined AOR based on the particular scenario and set of changes.
DOI: 10.5281/zenodo.14808307
title: Dynamic Reconnaissance Operations with UAV Swarms: Adapting to Environmental Changes

description: This repository contains six scenarios and the associated experiments from the journal article Dynamic Reconnaissance Operations with UAV Swarms: Adapting to Environmental Changes. Details about the files can be found in Readme.txt.

This repository contains the six scenarios (d01, d02, …, d06) and their variants (e.g., d01+PMI). Each scenario is stored in its own folder.

Inside each scenario folder, you will find:



A folder labeled AOR containing a text file (e.g., d01.txt) that defines the “Area of Responsibility”. This file lists polygon coordinates.

A Solutions folder, which contains files named in the format solutionXX-YY-ZZZ.txt where:   - XX corresponds to the scenario number (01 to 06)   - YY is the change index (01, 02, sometimes 03)   - ZZZ is the experiment trial number (001 to 100)   Each solution file describes the exact routes for one or more UAVs as a sequence of waypoints. The solutions demonstrate how the UAVs navigate within the defined AOR based on the particular scenario and set of changes.
DOI: 10.5281/zenodo.14745018
title: Tera-MIND: Tera-scale mouse brain simulation via spatial mRNA-guided diffusion

description: Comprehensive brain structure generation results, pathways and their attention visualization, checkpoints:



main.zip

supp_m.zip

supp_f.zip 


Example generation results in the format of WSI, which can be examined using QuPath:



WSI.zip


Patchwise gene expression data for the generation of mouse brain (main result):



gene_638850.zip
DOI: 10.5281/zenodo.14745019
title: Tera-MIND: Tera-scale mouse brain simulation via spatial mRNA-guided diffusion

description: Comprehensive brain structure generation results, pathways and their attention visualization, checkpoints:



main.zip

supp_m.zip

supp_f.zip 


Example generation results in the format of WSI, which can be examined using QuPath:



WSI.zip


Patchwise gene expression data for the generation of mouse brain (main result):



gene_638850.zip
DOI: 10.15468/dl.5ska5f
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga chiapensis Miranda ex M.Sousa)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014975-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axzjp6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Inga colimana Padilla, Cuevas & Solís)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014976-250127130748423/datasets/export for details.
DOI: 10.15468/dl.pttpnf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tenagodrilus musculus Eckroth & Brinkhurst, 1996"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014977-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10885934
title: Flux data kit, a comprehensive data set of ecosystem fluxes for land surface modelling

description: The Flux data kit is an effort to expand upon the existing work by Ukolla et a. (2022) to synthesize various sources of ecosystem flux data (i.e. the PLUMBER2 data set, gathered from all major networks). We further expand upon the original data set by integrating data which was either expanded upon (temporally) or where sites were added (e.g. the integration of ICOS data).

The effort uses the FluxnetLSM package by the above mentioned authors, as well as their general workflow. In contrast to the PLUMBER2 data set we do not apply stringent quality control, and all quality control on the availability of variables and/or their duration should be done by the user. Furthermore, we include both leaf area index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) in the netcdf output, where PLUMBER2 only provided LAI. On all other parts the formatting and naming conventions as well as quality control specifications remain the same as in PLUMBER2. We therefore refer to Ukolla et al. (2022) for details.

Data included

The data included consists of three files, containing different versions of the same data.



FLUXDATAKIT_LSM.tar.gz file contains compressed NetCDF files compatible with the ALMA scheme for land surface modelling. 

FLUXDATAKIT_FLUXNET.tar.gz file contains data in a CSV format according to the FLUXNET specifications.

rsofun_driver_data_v3.rds file is a compressed serialized R file containing data formatted for use with the {rsofun} R package.


Data generation

Data is generated using the FluxDataKit project. Although this project is not meant for continuous releases, and no support is provided in using this code with data provided AS IS, it might still be useful to some:

https://github.com/geco-bern/FluxDataKit

The data can be further complimented using the FluxnetEO dataset, which is accessible through the package with the same name as found here:

https://github.com/geco-bern/FluxnetEO

Acknowledgements

The flux data kit is part of the LEMONTREE project and funded by Schmidt Futures and under the umbrella of the Virtual Earth System Research Institute (VESRI).

References:



Ukkola, Anna M., Gab Abramowitz, and Martin G. De Kauwe. "A flux tower dataset tailored for land model evaluation." Earth System Science Data 14.2 (2022): 449-461.