cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4501412
title: Example data from timelapse fluorescence imaging experiments

description: Example data from timelapse fluorescence imaging experiments. The zip file <strong>0Archive_all_example_data.zip</strong> contains all the data: 201029_PMN_channel_06-2.tif: Migration of fluorescent leukocytes (label: Calcein red-orange). Time interval ~10s. EB3-timelapse.tif: Microtubule dynamics. Nocodazole is added midway through the movie to disrupt the microtubules (label: EB3-GFP). Time interval ~10s. mNeon-CAAX.tif: Plasma membrane dynamics of endothelial cells (label: mNeonGreen-CaaX). Time interval ~2s. 2010230_BOEC-mTq2-CaaX.tif: Morphological change of an endothelial cell due to contraction induced by thrombin (label: mTurquoise2-CaaX). Time interval ~40s. 210203_LEXY_combined.tif: Blue light activation of nuclear export (probe: LEXY tagged with mCherry). Time interval ~30s. Exposure with blue light at frames: 1-20,55-65,101-112,148-182 YCaM.zip: Calcium dynamics activated with histamine and deactivated by pyrilamine (probe: Yellow Cameleon 3.60, with Cyan and Yellow fluorescent protein). Time interval ~2s. Files and material for image processing and data analysis is available here: https://github.com/JoachimGoedhart/TimeLapse-Imaging-DataViz
DOI: 10.5281/zenodo.4501411
title: Example data from timelapse fluorescence imaging experiments

description: Example data from timelapse fluorescence imaging experiments. The zip file <strong>0Archive_all_example_data.zip</strong> contains all the data: 201029_PMN_channel_06-2.tif: Migration of fluorescent leukocytes (label: Calcein red-orange). Time interval ~10s. EB3-timelapse.tif: Microtubule dynamics. Nocodazole is added midway through the movie to disrupt the microtubules (label: EB3-GFP). Time interval ~10s. mNeon-CAAX.tif: Plasma membrane dynamics of endothelial cells (label: mNeonGreen-CaaX). Time interval ~2s. 2010230_BOEC-mTq2-CaaX.tif: Morphological change of an endothelial cell due to contraction induced by thrombin (label: mTurquoise2-CaaX). Time interval ~40s. 210203_LEXY_combined.tif: Blue light activation of nuclear export (probe: LEXY tagged with mCherry). Time interval ~30s. Exposure with blue light at frames: 1-20,55-65,101-112,148-182 YCaM.zip: Calcium dynamics activated with histamine and deactivated by pyrilamine (probe: Yellow Cameleon 3.60, with Cyan and Yellow fluorescent protein). Time interval ~2s. Files and material for image processing and data analysis is available here: https://github.com/JoachimGoedhart/TimeLapse-Imaging-DataViz
DOI: 10.5281/zenodo.4503163
title: OEKG - The Open Event Knowledge Graph

description: The Open Event Knowledge Graph (OEKG) is novel event-centric knowledge graph that is the focal point of integration of the different ESR projects conducted during the CLEOPATRA ITN project. The OEKG makes the extracted information available to the community and makes it accessible for a wide variety of applications and application domains within and beyond the Cleopatra ITN.
DOI: 10.5281/zenodo.4485004
title: OEKG - The Open Event Knowledge Graph

description: The Open Event Knowledge Graph (OEKG) is novel event-centric knowledge graph that is the focal point of integration of the different ESR projects conducted during the CLEOPATRA ITN project. The OEKG makes the extracted information available to the community and makes it accessible for a wide variety of applications and application domains within and beyond the Cleopatra ITN.
DOI: 10.5517/ccdc.csd.cc251gf4
title: CCDC 1997405: Experimental Crystal Structure Determination

description: Related Article: Chantal Carayon, Christiane André-Barrès, Nadine Leygue, Nathalie Saffon-Merceron, Martial Boggio-Pasqua, Suzanne Fery-Forgues|2021|Dyes Pigm.|187|109119|doi:10.1016/j.dyepig.2020.109119
DOI: 10.5517/ccdc.csd.cc251gg5
title: CCDC 1997406: Experimental Crystal Structure Determination

description: Related Article: Chantal Carayon, Christiane André-Barrès, Nadine Leygue, Nathalie Saffon-Merceron, Martial Boggio-Pasqua, Suzanne Fery-Forgues|2021|Dyes Pigm.|187|109119|doi:10.1016/j.dyepig.2020.109119
DOI: 10.5517/ccdc.csd.cc251gh6
title: CCDC 1997407: Experimental Crystal Structure Determination

description: Related Article: Chantal Carayon, Christiane André-Barrès, Nadine Leygue, Nathalie Saffon-Merceron, Martial Boggio-Pasqua, Suzanne Fery-Forgues|2021|Dyes Pigm.|187|109119|doi:10.1016/j.dyepig.2020.109119
DOI: 10.5517/ccdc.csd.cc251gj7
title: CCDC 1997408: Experimental Crystal Structure Determination

description: Related Article: Chantal Carayon, Christiane André-Barrès, Nadine Leygue, Nathalie Saffon-Merceron, Martial Boggio-Pasqua, Suzanne Fery-Forgues|2021|Dyes Pigm.|187|109119|doi:10.1016/j.dyepig.2020.109119
DOI: 10.5517/ccdc.csd.cc24wjsc
title: CCDC 1992673: Experimental Crystal Structure Determination

description: Related Article: Xiang Xue, Jinghang Wang, Qinyi Zhu, Yu Xue, Hewen Liu|2021|Dalton Trans.|50|1374|doi:10.1039/D0DT03952G
DOI: 10.5517/ccdc.csd.cc25xbgx
title: CCDC 2023229: Experimental Crystal Structure Determination

description: Related Article: Yue Li, Qing-Rong Kong, Ying Guo, Zheng Tang|2021|Dalton Trans.|50|1384|doi:10.1039/D0DT03796F
DOI: 10.5517/ccdc.csd.cc25xbhy
title: CCDC 2023230: Experimental Crystal Structure Determination

description: Related Article: Yue Li, Qing-Rong Kong, Ying Guo, Zheng Tang|2021|Dalton Trans.|50|1384|doi:10.1039/D0DT03796F
DOI: 10.5517/ccdc.csd.cc25xn4x
title: CCDC 2023529: Experimental Crystal Structure Determination

description: Related Article: Daiana Cabrosi, Carlos Cruz, Verónica Paredes-García, Pablo Alborés|2021|Dalton Trans.|50|1402|doi:10.1039/D0DT03075A
DOI: 10.5517/ccdc.csd.cc25z4dq
title: CCDC 2024963: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc25z4fr
title: CCDC 2024964: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc25z4kw
title: CCDC 2024968: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc25z4cp
title: CCDC 2024962: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc25z4jv
title: CCDC 2024967: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc26cbjg
title: CCDC 2036685: Experimental Crystal Structure Determination

description: Related Article: Ryo Kobayashi, Shintaro Ishida, Takeaki Iwamoto|2021|Dalton Trans.|50|1413|doi:10.1039/D0DT04240D
DOI: 10.5517/ccdc.csd.cc26cbkh
title: CCDC 2036686: Experimental Crystal Structure Determination

description: Related Article: Ryo Kobayashi, Shintaro Ishida, Takeaki Iwamoto|2021|Dalton Trans.|50|1413|doi:10.1039/D0DT04240D
DOI: 10.5517/ccdc.csd.cc26cblj
title: CCDC 2036687: Experimental Crystal Structure Determination

description: Related Article: Ryo Kobayashi, Shintaro Ishida, Takeaki Iwamoto|2021|Dalton Trans.|50|1413|doi:10.1039/D0DT04240D
DOI: 10.5517/ccdc.csd.cc26fb11
title: CCDC 2038592: Experimental Crystal Structure Determination

description: Related Article: Héctor Torralvo, Joan Albert, Xavier Ariza, Mercè Font-Bardia, Jordi Garcia, Jaume Granell, Manuel Martinez|2021|Organometallics|40|203|doi:10.1021/acs.organomet.0c00703
DOI: 10.5517/ccdc.csd.cc26fb22
title: CCDC 2038593: Experimental Crystal Structure Determination

description: Related Article: Héctor Torralvo, Joan Albert, Xavier Ariza, Mercè Font-Bardia, Jordi Garcia, Jaume Granell, Manuel Martinez|2021|Organometallics|40|203|doi:10.1021/acs.organomet.0c00703
DOI: 10.5517/ccdc.csd.cc26ntpd
title: CCDC 2045804: Experimental Crystal Structure Determination

description: Related Article: Jiang Wu, Anurag Noonikara-Poyil, Alvaro Muñoz-Castro, H. V. Rasika Dias|2021|Chem.Commun.|57|978|doi:10.1039/D0CC07717H
DOI: 10.5517/ccdc.csd.cc26ntqf
title: CCDC 2045805: Experimental Crystal Structure Determination

description: Related Article: Jiang Wu, Anurag Noonikara-Poyil, Alvaro Muñoz-Castro, H. V. Rasika Dias|2021|Chem.Commun.|57|978|doi:10.1039/D0CC07717H
DOI: 10.5517/ccdc.csd.cc25xbjz
title: CCDC 2023231: Experimental Crystal Structure Determination

description: Related Article: Yue Li, Qing-Rong Kong, Ying Guo, Zheng Tang|2021|Dalton Trans.|50|1384|doi:10.1039/D0DT03796F
DOI: 10.5517/ccdc.csd.cc25xbk0
title: CCDC 2023232: Experimental Crystal Structure Determination

description: Related Article: Yue Li, Qing-Rong Kong, Ying Guo, Zheng Tang|2021|Dalton Trans.|50|1384|doi:10.1039/D0DT03796F
DOI: 10.5517/ccdc.csd.cc25z4ht
title: CCDC 2024966: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.5517/ccdc.csd.cc25z4gs
title: CCDC 2024965: Experimental Crystal Structure Determination

description: Related Article: Aleksandra Ziółkowska, Natalia Szynkiewicz, Łukasz Ponikiewski|2021|Dalton Trans.|50|1390|doi:10.1039/D0DT04014B
DOI: 10.6084/m9.figshare.13717879
title: Test Data

description: Test Data
DOI: 10.6084/m9.figshare.13717879.v1
title: Test Data

description: Test Data
DOI: 10.6084/m9.figshare.13707952
title: Parent–adolescent communication on sexual and reproductive health and the utilization of adolescent-friendly health services in Kailali, Nepal

description: This dataset includes data from the study on Parent–adolescent communication on sexual and reproductive health and the utilization of adolescent-friendly health services in Kailali, Nepal.
DOI: 10.6084/m9.figshare.13717909
title: Test

description: Data
DOI: 10.6084/m9.figshare.13717909.v1
title: Test

description: Data
DOI: 10.5066/p9nffztv
title: Non-native Asian swamp eel, Monopterus albus/javanensis (Zuiew, 1973/Lacepede, 1800), responses to low temperatures

description: Asian swamp eel, Monopterus albus/javanensis [Zuiew, 1973/Lacepede, 1800], has been established in the southeastern USA since at least 1994, yet little is known about its ability to survive low winter temperatures. We use standard thermal methodologies to quantify low-temperature responses and provide a detailed description of swamp eel reactions to cold temperatures. When exposed to chronic temperature decreases of 1.0 C per day, swamp eels ceased foraging at 15.0 C, markedly diminished movements below 11.0 C, and became incapacitated near 9.6 C. During critical thermal minima (CTmin) trials, swamp eels exposed to acute temperature drops (0.25 C per minute) tolerated temperatures as low as 6.2 C. Swamp eels exhibited a moderate cold acclimation response, gaining 0.23 C in cold tolerance for every 1 C drop in acclimation temperature. Progressive time-series CTmin estimates for eels acclimated to 20.5 C followed by an acute temperature decrease to 16.0 C, revealed that cold acclimation may occur in only 8 days.
DOI: 10.6084/m9.figshare.13717912
title: Test Data Set

description: Data Set
DOI: 10.6084/m9.figshare.13717912.v1
title: Test Data Set

description: Data Set
DOI: 10.6084/m9.figshare.13717915
title: Test Data Chart

description: Data Chart
DOI: 10.6084/m9.figshare.13717915.v1
title: Test Data Chart

description: Data Chart
DOI: 10.5281/zenodo.4504017
title: Ooh Na Na Alternative Identifiers

description: A dump of the alternative identifiers extracted from the OBO Foundry as a three column TSV - prefixes, primary identifiers, and alt identifiers. Generated with the following code: <pre><code class="language-bash">pip install pyobo pyobo database alts</code></pre>
DOI: 10.5281/zenodo.4504026
title: Ooh Na Na Alternative Identifiers

description: A dump of the alternative identifiers extracted from the OBO Foundry as a three column TSV - prefixes, primary identifiers, and alt identifiers. Generated with the following code: <pre><code class="language-bash">pip install pyobo pyobo database alts</code></pre>
DOI: 10.15472/enzm9u
title: Paisajes sonoros desde tu ventana - Colombia

description: La iniciativa de ciencia participativa ¿Cómo suena mi ciudad? Paisajes sonoros desde tu ventana, emergió ante la necesidad de comprender qué cambios experimentaban los paisajes sonoros durante el aislamiento preventivo por la pandemia del COVID-19 durante el año 2020. Para ello, se realizaron grabaciones de audio de 90 segundos en todo el territorio nacional, siguiendo un protocolo de colecta estandarizado. En este proyecto colaborativo participaron 208 ciudadanos científicos de 20 departamentos del país e investigadores del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt. La colecta de datos se realizó entre abril y agosto del 2020, durante dos momentos claves del aislamiento preventivo: 1) aislamiento estricto, 2) reactivación gradual de actividades. El conjunto de datos contiene 4556 paisajes sonoros.
DOI: 10.5281/zenodo.4504039
title: Ooh Na Na Synonyms

description: This is a gzipped three-column TSV file that has prefixes, identifiers, and synonyms for lots of biomedical entities drawn from the terminologies and ontologies in PyOBO. It was generated with the following code in the shell: <pre><code class="language-bash">pip install pyobo pyobo database synonyms</code></pre> <pre>Any silly name suggestions that include literary references are welcome :) </pre>
DOI: 10.5066/p9aiuloq
title: Suspended-sediment and sand concentrations, streamflow, acoustic data, linear regression models, and loads for the Lower Minnesota River, 2012-2019

description: A series of linear regression models were developed and calibrated for two Lower Minnesota River sites. The linear regression models were either calibrated using acoustic or streamflow data to estimate suspended-sediment or sand concentration data. Data were collected during calendar years 2012 through 2019. The estimates of suspended-sediment and concentrations from the linear regression were used to calculate loads. The calibrated models were used to improve understanding of sediment and sand transport processes and increase accuracy of estimating sediment and sand concentrations and loads for the Lower Minnesota River, as part of the associated report, U.S. Geological Survey Open File Report 2021?1005 (https://doi.org/10.3133/ofr20211005).
DOI: 10.5281/zenodo.4504092
title: Inspector Javert's Xref Database

description: It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD. We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed. It was generated with the following code in the shell: <pre>pip install pyobo pyobo obo xrefs</pre> More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.
DOI: 10.25345/c5z20w
title: MassIVE MSV000086806 - SPT5 licenses transition into productive transcription elongation by regulating promoter-proximal Pol II stability
title: An acute protein depletion system coupled with proteomic and genomic analyses reveal how SPT5 regulates promoter-proximal Pol II stability in eukaryotic cells, linking transcriptional initiation to productive elongation.
DOI: 10.5255/ukda-sn-854151
title: Calibrating Trust Towards An Autonomous Image Classifier, 2019

description: Successful adoption of autonomous systems requires appropriate trust from human users, with trust calibrated to reflect true system performance. Autonomous image classifiers are one such example and can be used in a variety of settings to independently identify the contents of image data. We investigated users’ trust when collaborating with an autonomous image classifier system that we created using the AlexNet model (Krizhevsky et al., 2012). Participants collaborated with the classifier during an image classification task in which the classifier provided labels that either correctly or incorrectly described the contents of images. This task was complicated by the quality of the images processed by the human-classifier team: 50% of the trials featured images that were cropped and blurred, thereby partially obscuring their contents. Across 160 single-image trials, we examined trust towards the classifier, while we also looked at how participants complied with the classifier by accepting or rejecting the labels it provided. Furthermore, we investigated whether trust towards the classifier could be improved by increasing the transparency of the classifier’s interface, by displaying system confidence information in three different ways, which were compared to a control interface without confidence information. Results showed that trust towards the classifier was primarily based on system performance, yet this also was influenced by the quality of the images and individual differences amongst participants. While participants typically preferred classifier interfaces that presented confidence information, it did not appear to improve participants’ trust towards the classifier.
DOI: 10.6084/m9.figshare.13713889
title: Data associated with the manuscript "Polariton lasing and energy-degenerate parametric scattering in non-resonantly driven coupled planar microcavities"

description: The data contained in the manuscript "Polariton lasing and energy-degenerate parametric scattering in non-resonantly driven coupled planar microcavities" by Sawicki et al.<br><br>
DOI: 10.6073/pasta/b84f468bccfa3651c6d8fed6833cf085
title: Long-term monitoring of peatlands located near oil sands mining activities surrounding Fort McMurray, Alberta, Canada

description: Oil sands mining activities in the Fort McMurray region of Alberta, Canada, have led to increased atmospherically deposited nitrogen (N) and sulfur (S), with N steadily increasing over time and S peaking in 2009, then decreasing with the installation of scrubbers on upgrader stacks. Ecosystems (such as ombrotrophic bogs) near these mining activities see an increase to their depositional load. These peatlands are isolated from groundwater and receive inputs only from precipitation, making them uniquely susceptible to changing depositional scenarios. To evaluate the effect of oil sands development on bogs in this area, since 2009, we have collected and analyzed porewater (pH, conductivity, NH4 +-N, NO3 --N, SO4 2--S, and total dissolved N), N and S as represented in extractions of ion exchange resin precipitation collectors (NH4 +-N, NO3 --N, SO4 2--S), samples of new growth from the most dominant plant species (C, N, and S), and have recorded annual growth of vegetation. For a majority of the years, we have sampled at least 3 times (June, July, and August). Some sites have burned and have been replaced by others, however, collections are on-going and data from these collections are uploaded as they are published.
DOI: 10.5255/ukda-sn-853663
title: Transnational Organised Crime and Translation, 2016-2018

description: During the TOCAT project, we conducted multiple interviews and focus groups with frontline workers involved in police and related investigations across languages. Some of these were for information, to understand the experiences of interpreters in particular. These are included in this data collection. Others were designed for understanding by the UK police, Home Office and College of Policing, to inform internal training and guidance. Most of these were with practising investigators who required guarantees of confidentiality in order to discuss live investigations. These are therefore not included. In addition, many interpreters refused permission to share the data in their interviews due to their professional duty of client confidentiality. These are therefore also not included. Finally, some police and Home Office trainers were interviewed. Their interviews are not included as the number of trainers is very small and the individuals could be identified from their responses. The interviews included here were all qualitative semi-structured interviews conducted in person or by phone. All the interviews included here were conducted by the Principal Investigator, Prof. Joanna Drugan. They were transcribed by a team of trained transcribers and checked and anonymised by the PI prior to upload to remove any details which might identify individuals (e.g. the language spoken, as this is a very small specialised field in the UK where professionals are in close contact with one another).
DOI: 10.5281/zenodo.4504286
title: Ooh Na Na

description: This is a gzipped three-column TSV file that has 138,749,325 prefixes, identifiers, and names for lots of biomedical entities, drawing from the OBO Foundry, ontologies in the Ontology Lookup Service, and many other nomenclature consortia that just haven't made it to the prime-time of standardized goodness. Ultimately, this dataset helps answer the question: what's my name? It's really a lot of work to get this stuff, so I tried to make it easy. It was generated with the following code in the shell: <pre>pip install pyobo obo database names</pre> More information on how and why this resource was made is available at https://cthoyt.com/2020/04/18/ooh-na-na.html.
description: The 1.2.0 version includes the addition of PubChem, ChEBML, and NPASS
DOI: 10.25345/c5t78d
title: MassIVE MSV000086807 - GNPS - Plant metabolomes with cyclic peptides
title: Plant metabolic extracts. Plant tissues as specified in file name were collected from adult live plants in the University of Michigan Matthaei Botanical Garden. 0.2g fresh weight tissue were frozen, ground in a Tissuelyzer for 2min at 6m/s with 10 2.3mm silica beads in 2mL vials. Ground tissue was extracted with 3mL methanol for 1h at 37 celsius shaking. Methanol was separated from insoluble material and dried under nitrogen. Dried crude methanol extracts were resuspended in water, partitioned twice with 3 mL hexane, 3 mL ethyl acetate and finally extracted with 3 mL n-butanol. n-butanol extracts were dried in a speedvac concentrator, resuspended in 1 mL methanol and analyzed by LC-MS/MS on an Thermo QExactive orbitrap with a ESI source. LC-MS settings were as follows: Injection volume 5 uL, LC - Phenomenex Kinetex 2.6 um C18 reverse phase 100 A 150 x 3 mm LC column, LC gradient: solvent A - 0.1% formic acid, solvent B - acetonitrile (0.1% formic acid), 0 min: 10% B, 5 min: min: 60% B, 5.1 min: 95% B, 6 min: 95% B, 6.1 min: 10% B, 9.9 min: 10% B, 0.5 mL/min, MS - positive ion mode, Full MS: Resolution 70000, mass range 400-1200 m/z, dd-MS2 (data-dependent MS/MS): resolution 17500, AGC target 1e5, Loop count 5, Isolation width 1.0 m/z, Collision energy 25 eV, dynamic exclusion 0.5 s.
DOI: 10.5281/zenodo.4475935
title: Cross Methylome Omnibus (CMO) models

description: CMO is a gene-level association test that can identify many significant and novel genes ignored by many benchmark methods. Specifically, CMO integrates genetically regulated DNAm in enhancers, promoters, and the gene body to identify additional disease-associated genes. This repo contains the necessary models for CMO test. The corresponding software: https://github.com/ChongWuLab/CMO Thank you for using this software! Let me (cwu3@fsu.edu) know if you have any questions!