cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mpeap5
title: Occurrence Download

description: A dataset containing 1030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Eretmochelys imbricata (Linnaeus, 1766)"
 ]
}

 The dataset includes 1030 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208358-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr3u23
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Philautus kempii (Annandale, 1912)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026757-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agnxut
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthemblemaria mangognatha Hastings & Robertson, 1999"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031396-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ze5kn
title: Occurrence Download

description: A dataset containing 1596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Occurrence evidence)",
 "Geometry POLYGON((142.17816 -10.09682,129.45479 -37.64286,148.90337 -45.89383,161.44498 -20.08545,142.17816 -10.09682))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pteropus poliocephalus Temminck, 1825",
 "Year 2021-2023"
 ]
}

 The dataset includes 1596 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013216-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsq26b
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Phyllodactylus magnus Taylor, 1942"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169086-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cz0jdy
title: Occurrence Download

description: A dataset containing 5472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meleagris ocellata Cuvier, 1820"
 ]
}

 The dataset includes 5472 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031396-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjb3ep
title: Occurrence Download

description: A dataset containing 443380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Luscinia megarhynchos C.L.Brehm, 1831"
 ]
}

 The dataset includes 443380 records from 771 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204059-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jv7fv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus capax Maassoumi"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026797-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zevrv7
title: Occurrence Download

description: A dataset containing 36735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 1000-2017",
 "PublishingCountry is Colombia",
 {
 "or" : [
 "TaxonKey is Bryophyta",
 "TaxonKey is Marchantiophyta",
 "TaxonKey is Charophyta",
 "TaxonKey is Chlorophyta",
 "TaxonKey is Rhodophyta",
 "TaxonKey is Anthocerotophyta"
 ]
 }
 ]
}

 The dataset includes 36735 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031397-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcw6uy
title: Occurrence Download

description: A dataset containing 3876 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer davidii Franch."
 ]
}

 The dataset includes 3876 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154412-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78anh5
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Globba fragilis S.N.Lim"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013224-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdjd31
title: Occurrence Download

description: A dataset containing 131479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Icterus cucullatus Swainson, 1827"
 ]
}

 The dataset includes 131479 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031397-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfydjs
title: Occurrence Download

description: A dataset containing 585 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is India",
 "Country is Nepal",
 "Country is Pakistan"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Boselaphus tragocamelus (Pallas, 1766)"
 ]
}

 The dataset includes 585 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184163-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52z5sx
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium talaveranum Ortega Oliv. & Devesa"
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013231-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48rqdw
title: Occurrence Download

description: A dataset containing 10689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus americanus Pallas, 1780"
 ]
}

 The dataset includes 10689 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031399-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy3gqx
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Geometry POLYGON((-65.83008 -60.19616,-16.34766 -60.67318,-15.11719 -42.81152,-13.71094 -12.89749,-31.28906 10.83331,-43.24219 24.84657,-38.32031 36.87962,-25.83984 65.58572,-36.38672 67.54217,-47.63672 67.54217,-68.68652 67.25506,-69.16992 65.54937,-77.21191 64.68032,-78.00293 63.33241,-77.3877 62.20651,-72.68555 59.04055,-70.13672 53.85253,-76.24512 48.95137,-78.83789 41.83683,-82.44141 37.30028,-95.80078 33.57801,-101.77734 27.21556,-98.10791 18.16673,-94.81201 17.28771,-90.06592 14.96601,-87.60498 15.00846,-85.18799 13.94473,-84.35303 10.2933,-82.33154 8.68964,-81.10107 8.47237,-80.52979 8.6462,-79.29932 9.25394,-78.46436 8.9936,-77.03613 7.4932,-69.60937 2.1089,-50.97656 -14.26438,-68.99414 -40.5138,-72.1582 -51.01375,-68.4668 -54.41893,-65.83008 -60.19616))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solaster benedicti Verrill, 1894"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188136-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brxusm
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Chile"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Flaveria Juss.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 261 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031399-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhsgzh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Hong Kong",
 "Country is Macao"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cheilinus undulatus Rüppell, 1835"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206727-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue6obb
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrurus mipartitus mipartitus"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031400-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv977t
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-2020.0",
 "Geometry POLYGON((43.08838 45.21973,28.41064 50.00977,21.11572 54.58008,13.24951 53.30566,7.84424 51.94336,7.97607 46.14258,13.16162 45.08789,17.42432 42.40723,18.78662 39.11133,22.69775 33.83789,31.92627 35.1123,41.37451 38.62793,43.08838 45.21973))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyprinus carpio Linnaeus, 1758"
 ]
}

 The dataset includes 852 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190707-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yv4ws
title: Occurrence Download

description: A dataset listing the 1333991 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Insecta"
 ]
}

 The dataset's 1333991 records were derived from 20371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026776-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14163898
title: Underlying Data for Overcoming the Silencing of Doxycycline-Inducible Promoters in hiPSC-derived Cardiomyocytes

description: Background: Human induced pluripotent stem cells (hiPSCs) hold great promise for studying human development, perform disease modeling, and develop regenerative medicine approaches. Effective control of transgene expression is crucial to achieve temporal and quantitative precision in all of these contexts. The use of doxycycline (dox)-inducible systems provides a promising approach. In particular, the OPTi-OX platform achieves optimal expression in hiPSCs by separately integrating the constitutively expressed third generation reverse tetracycline-controlled transactivator (Tet-ON 3G) and the dox-responsive transgene at two different genomic safe habors (GSH), the human ROSA26 and AAVS1 loci, respectively. However, transgene silencing during differentiation of OPTi-OX hiPSCs, for instance in hiPSC-derived cardiomyocytes (hiPSC-CMs), remains a major challenge.

Methods: To address this issue, we tested various strategies for enhancing dox-inducible transgene expression in OPTi-OX hiPSCs and hiPSC-CMs. Two promoters, TRE3VG and a modified variant T11, were evaluated for activity and stability. We also examined the addition of a Ubiquitous Chromatin Opening Element (UCOE) to prevent silencing. Furthermore, we explored relocating the inducible transgene cassette to an alternative GSH, the CLYBL locus. Finally, we tested inhibition of histone deacetylases (HDAC) using sodium butyrate (SB) to restore the activity of silenced promoters. We assessed inducible promoter activity via flow cytometry of an inducible reporter gene in both hiPSCs and hiPSC-CMs. Additionally, we quantified Tet-ON 3G expression with real-time quantitative PCR (RT-qPCR).

Results: TRE3VG demonstrated stronger activity than T11, but both were prone to silencing. UCOE did not increase promoter activity in hiPSCs, but modestly prevented silencing in hiPSC-CMs. Targeting the CLYBL GSH improved promoter activity compared to the AAVS1 locus in both hiPSCs and hiPSC-CMs. SB treatment successfully restored silenced promoter activity in hiPSC-CMs, but negatively impacted hiPSC viability.

Conclusions: This study highlights the complex nature of inducible promoter silencing during hiPSC differentiation and suggests that combined strategies, including GSH selection, optimal cassette, and chromatin modifications, are necessary to achieve stable transgene expression.
DOI: 10.5281/zenodo.14213119
title: Underlying Data for Overcoming the Silencing of Doxycycline-Inducible Promoters in hiPSC-derived Cardiomyocytes

description: Background: Human induced pluripotent stem cells (hiPSCs) are pivotal for studying human development, modeling diseases, and advancing regenerative medicine. Effective control of transgene expression is crucial to achieve temporal and quantitative precision in all of these contexts. The doxycycline (dox)-inducible OPTi-OX system, which integrates the Tet-On 3G transactivator and dox-responsive transgene at the hROSA26 and AAVS1 genomic safe harbors (GSHs), respectively, offers a promising solution. Yet, transgene silencing, particularly in hiPSC-derived cardiomyocytes (hiPSC-CMs), limits its utility.

Methods: To address this, we evaluated strategies to enhance dox-inducible transgene expression. We compared two promoters, TRE3VG and T11, for activity and stability, and investigated the addition of a Ubiquitous Chromatin Opening Element (UCOE) to reduce silencing. We also tested relocating the transgene cassette to the CLYBL GSH, and employed sodium butyrate (SB), a histone deacetylase inhibitor, to restore promoter activity. Transgene expression was assessed via flow cytometry and real-time quantitative PCR.

Results: TRE3VG exhibited higher activity than T11, but both were prone to silencing. UCOE did not enhance promoter activity in hiPSCs, but modestly reduced silencing in hiPSC-CMs. Targeting the CLYBL locus improved promoter activity compared to AAVS1 in both hiPSCs and hiPSC-CMs. SB restored activity in silenced inducible promoters within hiPSC-CMs, but compromised hiPSC viability. Unexpectedly, Tet-On 3G was silenced in some clones and could not be reactivated by SB.

Conclusions: These findings underscore the need for integrating multiple strategies, including careful GSH selection, improved cassette design, epigenetic modulation, and clone screening, to develop robust dox-inducible systems that retain functionality during hiPSC differentiation.
DOI: 10.13145/bacdive10754.20240510.9
title: Nocardia africana Hamid et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10755.20240510.9
title: Nocardia africana Hamid et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10756.20240510.9
title: Nocardia africana Hamid et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10757.20240510.9
title: Nocardia veterana Gürtler et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10758.20240510.9
title: Nocardia veterana Gürtler et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10759.20240510.9
title: Nocardia veterana Gürtler et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10760.20240916.9.1
title: Nocardia veterana Gürtler et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10761.20240510.9
title: Nocardia veterana Gürtler et al. 2001 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10762.20240916.9.1
title: Nocardia cerradoensis Albuquerque de Barros et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10763.20240916.9.1
title: Nocardia pseudovaccinii Kim et al. 2002 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.gzjyea
title: Occurrence Download

description: A dataset containing 1481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synagrops japonicus (Döderlein, 1883)"
 ]
}

 The dataset includes 1481 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059635-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive10764.20240916.9.1
title: Nocardia ignorata Yassin et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10765.20240916.9.1
title: Nocardia crassostreae Friedman et al. 1998 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10766.20240510.9
title: Nocardia puris Yassin et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10767.20240916.9.1
title: Nocardia puris Yassin et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10768.20240916.9.1
title: Nocardia beijingensis Wang et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10769.20240510.9
title: Nocardia beijingensis Wang et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.xrpyex
title: Occurrence Download

description: A dataset containing 18611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl."
 ]
}

 The dataset includes 18611 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059630-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive10770.20240916.9.1
title: Nocardia vinacea Kinoshita et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.xa4hjf
title: Occurrence Download

description: A dataset containing 28271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is one of (France, Spain, Switzerland, Andorra, Austria, Italy, Germany)",
 "Issue is one of (Geodetic datum assumed WGS84, Continent derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus uncinata Ramond ex DC."
 ]
}

 The dataset includes 28271 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059633-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive10771.20240510.9
title: Nocardia devorans Maldonado et al.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10772.20240510.9
title: Nocardia novocastrense Maldonado et al.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10773.20240916.9.1
title: Nocardia tenerifensis Kämpfer et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.