cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13625798
title: Data and results for "Measuring irreversibility from learned representations of biological patterns"

description: `raw_data.zip` is an archive of `raw_data/` containing CGL simulation and Rho-GTPase experiment data

`raw_data_extra.zip` contains a reference frame and additional data; it should be unzipped in `raw_data/`

`results.zip` is an archive of `results/` containing FVAE training results

`vary_near_critical_raw_data.zip` is an archive of raw data used in Fig. S10 and should be unzipped in `raw_data/`

`vary_near_critical_results.zip` is an archive of results used in Fig. S10 and should be unzipped in `results/`
DOI: 10.5281/zenodo.7734340
title: Data and results for "Measuring irreversibility from learned representations of biological patterns"

description: datasets.zip is an archive of CGL simulation and Rho-GTPase experiment data full_results.zip is an archive of FVAE training results
DOI: 10.5281/zenodo.8352162
title: Data and results for "Measuring irreversibility from learned representations of biological patterns"

description: raw_data.zip is an archive of CGL simulation and Rho-GTPase experiment data results.zip is an archive of FVAE training results
DOI: 10.5281/zenodo.10976053
title: Data and results for "Measuring irreversibility from learned representations of biological patterns"

description: `raw_data.zip` is an archive of `raw_data/` containing CGL simulation and Rho-GTPase experiment data

`raw_data_extra.zip` contains a reference frame and additional data; it should be unzipped in `raw_data/`

`results.zip` is an archive of `results/` containing FVAE training results
DOI: 10.15468/dl.2e5env
title: Occurrence Download

description: A dataset containing 44645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alytes obstetricans (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 44645 records from 1091 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112258-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rkgt2
title: Occurrence Download

description: A dataset containing 23196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Felis silvestris Schreber, 1777",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 23196 records from 291 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112259-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11511320
title: Simulated Inter-turn Short Circuit Faults in Wind Turbine Generator Stators: A Benchmark Dataset

description: While extensive Condition Monitoring and Fault Diagnosis (CMFD) systems are developed based on the Supervisory Control and Data Acquisition (SCADA) system, high-frequency data crucial for monitoring electrical failures is often absent in the standard 10-minute sampling dataset. To address this gap, we have open-sourced a dataset aimed at enhancing the development of CMFD systems in wind turbine generators.

This dataset includes 75 inter-turn short circuit faults (ITSCFs) simulated in the wind turbine (WT) generator stator using MATLAB/Simulink, based on the example: Wind Turbine - MATLAB & Simulink (mathworks.com). In the Simulink WT model, the generator stator is characterized by an equivalent impedance of  R=0.0027 Ohm. The stator winding is partitioned into healthy and faulty segments, with an increasing series of faulty winding ratios p_s:={0.05, 0.1, 0.2, 0.3, 0.5} representing the progression of degradation. Additionally, a decreasing series of short circuit resistances R_s:={1, 0.1, 0.01, 0.001, 0.0001} Ohm models the degradation of the insulation layer. Considering that ITSCFs can occur in three phases, a total of 5x5x3=75 ITCSF scenarios are generated. Including a normal operation scenario without ITSCF, the dataset comprises 76 scenarios in total.

Each scenario is simulated for 80 seconds using the default wind speed profile from the WT example. The phase-to-phase current (in Amperes) and voltage (in Volts) signals for all three phases are recorded at a sampling frequency of 4 kHz.

Both .mat and .csv files encompassing all scenarios are provided, along with metadata. The 76 .mat files, each corresponding to a specific scenario, are compressed into a zip file, where the signals are stored in time-series format, with separate metadata files included.

For those interested in accessing the Simulink model, the Wind Turbine Simulink (ITSCF).zip is available, with a ReadMe.txt file inside for guidance.

We encourage further contributions based on this benchmark WT model. Related materials and updates will be posted at https://github.com/UTD-DOES/WT-ITSCF-Benchmark. Contributions and questions are welcome at: jingyi.yan@utdallas.edu or jiezhang@utdallas.edu
DOI: 10.5281/zenodo.11511321
title: Simulated Inter-turn Short Circuit Faults in Wind Turbine Generator Stator: Benchmark Dataset

description: While extensive Condition Monitoring and Fault Diagnosis (CMFD) systems are built on top of the Supervisory Control and Data Acquisition (SCADA) system, the high frequency information is missing in the 10-minute sampling dataset for condition monitoring, especially for electrical failures. This dataset is open-sourced to enhance the development of CMFD system in wind turbine generator.

In this record, 75 inter-turn short circuit faults (ITSCFs) in wind turbine (WT) generator stator are defined and simulated based on the MATLAB/Simulink WT example: Wind Turbine - MATLAB & Simulink (mathworks.com).

In the Simulink WT model, the generator stator is modeled based on the generator's equivalent impedance R=0.0027 Ohm. Such stator winding is initially partitioned into healthy and faulty parts, and an increasing series of faulty winding ratio p_s:={0.05, 0.1, 0.2, 0.3, 0.5} represents the propagation of the degradation. Then, a decreasing series of  short circuit resistance R_s:={1,0.1,0.01,0.001,0.0001} Ohm represents the degradation of the insulation layer. Considering ITSCFs taking place in three phases, totally 5x5x3=75 ITCSF scenarios are generated. Including a normal operation scenario with no ITSCF, the dataset contains 76 scenarios.

All scenarios run 80 seconds with default wind speed profile in the WT example. 3 phases' phase-to-phase current (in Ampere, A) and voltage (in Volt, V) signals are recorded at 4kHz frequency.

Both .mat and .csv files including all scenarios are provided with metadata. 76 .mat files associated with every scenario are zipped, where all signals are in time series format and separate metadata are provided.

For those who want to access to the Simulink model, please refer to Wind Turbine Simulink (ITSCF).zip. Separate ReadMe.txt can be found inside.

More contributions based on the same benchmark WT model are highly welcomed. More related material will be updated in https://github.com/UTD-DOES/WT-ITSCF-Benchmark. Any contribution and question can be emailed to: jingyi.yan@utdallas.edu.
DOI: 10.15468/dl.zp2yvk
title: Occurrence Download

description: A dataset containing 4818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luronium natans (L.) Raf.",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 4818 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112260-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/g3b7-qab4
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.6084/m9.figshare.19350080.v1
title: Additional file 7 of Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues

description: Additional file 7: Table S6. Genes with covariation between expression and RPS.
DOI: 10.48597/gmvd-3wja
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.6084/m9.figshare.19350071
title: Additional file 4 of Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues

description: Additional file 4: Table S3. A/B compartments in each adipose depot.
DOI: 10.48597/gu87-ytpg
title: Measurement of Sulphur_dioxide at High Muffles

description: Measurement of Sulphur_dioxide at High Muffles
DOI: 10.48597/hj6y-5vrb
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.6084/m9.figshare.24068999.v2
title: A Simple Divide-and-Conquer-based Distributed Method for the Accelerated Failure Time Model

description: The accelerated failure time (AFT) model is an appealing tool in survival analysis because of its ease of interpretation, but when there is a large volume of data, fitting an AFT model and carrying out the associated inference on one computer can be computationally demanding. This poses a severe limitation for the application of the AFT model in the face of big data. The article addresses this problem by developing a simple distributed method for estimating the parameters of an AFT model based on the divide-and-conquer strategy, which has the dual benefits of statistical efficiency and computational economy. It is an iterative method that involves, for the most part, some rather simple algebraic operations, except for obtaining the initial estimate, which is based on a smoothed approximation of the Gehan estimating equation. Our results show that the proposed method yields estimates that converge after a few iterations and an estimator that is asymptotically as efficient as the benchmark estimator obtained by using the full data in one go. We also develop an associated inference procedure. The merits of the proposed method are demonstrated via an extensive simulation study. The method is applied to a kidney transplantation dataset. Supplementary materials for this article are available online.
DOI: 10.48597/hzh4-xg8j
title: Measurement of Sulphate_corrected at High Muffles

description: Measurement of Sulphate_corrected at High Muffles
DOI: 10.5281/zenodo.10676533
title: Supporting data "Stick-Slip in a Stack: How Slip Dissonance Reveals Aging" - numerics

description: All key data of events

Selection of fully restorable data of events (further data available upon request)

Explanation of data and workflow from code doi: 10.5281/zenodo.10723136
DOI: 10.5281/zenodo.10676534
title: Supporting data "Stick-Slip in a Stack: How Slip Dissonance Reveals Aging" - numerics

description: All key data of events

Selection of fully restorable data of events (further data available upon request)

Explanation of data and workflow from code doi: 10.5281/zenodo.10723136
DOI: 10.48597/j9ze-dmyd
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/k53q-vftt
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/k6re-kknn
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.48597/ktas-c2g6
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.48597/mwfz-ujws
title: Measurement of Inorganics in precipitation at Lough Navar

description: Measurement of Inorganics in precipitation at Lough Navar
DOI: 10.48597/nctj-3b4w
title: Measurement of Sulphate_corrected at Yarner Wood

description: Measurement of Sulphate_corrected at Yarner Wood
DOI: 10.48597/npcq-xftv
title: Measurement of Inorganics in precipitation at Lough Navar

description: Measurement of Inorganics in precipitation at Lough Navar
DOI: 10.48597/npj2-8rwa
title: Measurement of Sulphate_corrected at Yarner Wood

description: Measurement of Sulphate_corrected at Yarner Wood
DOI: 10.6084/m9.figshare.19350062.v1
title: Additional file 1 of Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues

description: Additional file 1: Table S1. Nutrient levels in the experimental diets.
DOI: 10.48597/p852-wvka
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/p968-nmet
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/pan4-9683
title: Measurement of Sulphate_corrected at Lough Navar

description: Measurement of Sulphate_corrected at Lough Navar
DOI: 10.6084/m9.figshare.19350074.v1
title: Additional file 5 of Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues

description: Additional file 5: Table S4. Conserved and breeds-specific TAD boundary positions.
DOI: 10.6084/m9.figshare.19350083.v1
title: Additional file 8 of Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues

description: Additional file 8: Table S7. Differentially expressed genes between two pig breeds.
DOI: 10.48597/pjsn-hxqp
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.6084/m9.figshare.24068999.v1
title: A Simple Divide-and-Conquer-based Distributed Method for the Accelerated Failure Time Model

description: The accelerated failure time (AFT) model is an appealing tool in survival analysis because of its ease of interpretation, but when there is a large volume of data, fitting an AFT model and carrying out the associated inference on one computer can be computationally demanding. This poses a severe limitation for the application of the AFT model in the face of big data. The present paper addresses this problem by developing a simple distributed method for estimating the parameters of an AFT model based on the divide-and-conquer strategy, which has the dual benefits of statistical efficiency and computational economy. It is an iterative method that involves, for the most part, some rather simple algebraic operations, except for obtaining the initial estimate, which is based on a smoothed approximation of the Gehan estimating equation. Our results show that the proposed method yields estimates that converge after a few iterations and an estimator that is asymptotically as efficient as the benchmark estimator obtained by using the full data in one go. We also develop an associated inference procedure. The merits of the proposed method are demonstrated via an extensive simulation study. The method is applied to a kidney transplantation data set. Supplementary materials for this paper are available online.
DOI: 10.21227/ekzk-0k28
title: IEEEXtreme 16: Gaius Letters

description: This dataset contains a total of 8119 submissions, with 39% correct solutions and 73% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/gaius-letters/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.24069102
title: Systematical analyses of large-scale transcriptome reveal viral infection-related genes and disease comorbidities

description: Perturbation of transcriptome in viral infection patients is a recurrent theme impacting symptoms and mortality, yet a detailed understanding of pertinent transcriptome and identification of robust biomarkers is not complete. In this study, we manually collected 23 datasets related to 6,197 blood transcriptomes across 16 types of respiratory virus infections. We applied a comprehensive systems biology approach starting with whole-blood transcriptomes combined with multilevel bioinformatics analyses to characterize the expression, functional pathways, and protein-protein interaction (PPI) networks to identify robust biomarkers and disease comorbidities. Robust gene markers of infection with different viruses were identified, which can accurately classify the normal and infected patients in train and validation cohorts. The biological processes (BP) of different viruses showed great similarity and enriched in infection and immune response pathways. Network-based analyses revealed that a variety of viral infections were associated with nervous system diseases, neoplasms and metabolic diseases, and significantly correlated with brain tissues. In summary, our manually collected transcriptomes and comprehensive analyses reveal key molecular markers and disease comorbidities in the process of viral infection, which could provide a valuable theoretical basis for the prevention of subsequent public health events for respiratory virus infections.
DOI: 10.6084/m9.figshare.24069102.v1
title: Systematical analyses of large-scale transcriptome reveal viral infection-related genes and disease comorbidities

description: Perturbation of transcriptome in viral infection patients is a recurrent theme impacting symptoms and mortality, yet a detailed understanding of pertinent transcriptome and identification of robust biomarkers is not complete. In this study, we manually collected 23 datasets related to 6,197 blood transcriptomes across 16 types of respiratory virus infections. We applied a comprehensive systems biology approach starting with whole-blood transcriptomes combined with multilevel bioinformatics analyses to characterize the expression, functional pathways, and protein-protein interaction (PPI) networks to identify robust biomarkers and disease comorbidities. Robust gene markers of infection with different viruses were identified, which can accurately classify the normal and infected patients in train and validation cohorts. The biological processes (BP) of different viruses showed great similarity and enriched in infection and immune response pathways. Network-based analyses revealed that a variety of viral infections were associated with nervous system diseases, neoplasms and metabolic diseases, and significantly correlated with brain tissues. In summary, our manually collected transcriptomes and comprehensive analyses reveal key molecular markers and disease comorbidities in the process of viral infection, which could provide a valuable theoretical basis for the prevention of subsequent public health events for respiratory virus infections.
DOI: 10.48597/pndq-tgcc
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/qjn9-nw6w
title: Measurement of Sulphate_corrected at High Muffles

description: Measurement of Sulphate_corrected at High Muffles
DOI: 10.48597/qjvj-mdu4
title: Measurement of Sulphate_corrected at Yarner Wood

description: Measurement of Sulphate_corrected at Yarner Wood
DOI: 10.48597/qneh-wx42
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/r5da-wm3t
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/rmu3-xf5n
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/rpfy-6dz3
title: Measurement of Sulphur_dioxide at High Muffles

description: Measurement of Sulphur_dioxide at High Muffles
DOI: 10.48597/sqef-a9ft
title: Measurement of Sulphate_corrected at Lough Navar

description: Measurement of Sulphate_corrected at Lough Navar
DOI: 10.48597/surh-mad3
title: Measurement of Sulphate_corrected at High Muffles

description: Measurement of Sulphate_corrected at High Muffles
DOI: 10.48597/tqka-p2md
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.48597/ts28-2n4h
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/tzu9-uvn5
title: Measurement of Inorganics in precipitation at High Muffles

description: Measurement of Inorganics in precipitation at High Muffles
DOI: 10.48597/u45w-cghw
title: Measurement of Sulphate_corrected at Yarner Wood

description: Measurement of Sulphate_corrected at Yarner Wood
DOI: 10.48597/u9sw-cvma
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/ujk8-25e7
title: Measurement of Sulphate_corrected at High Muffles

description: Measurement of Sulphate_corrected at High Muffles
DOI: 10.48597/uvqv-vbw5
title: Measurement of Inorganics in precipitation at Lough Navar

description: Measurement of Inorganics in precipitation at Lough Navar
DOI: 10.48597/v8ts-7uqq
title: Measurement of Sulphate_corrected at Lough Navar

description: Measurement of Sulphate_corrected at Lough Navar
DOI: 10.48597/vbdb-cpw4
title: Measurement of Sulphate_corrected at Yarner Wood

description: Measurement of Sulphate_corrected at Yarner Wood
DOI: 10.48597/vcy4-9sr5
title: Measurement of Sulphur_dioxide at High Muffles

description: Measurement of Sulphur_dioxide at High Muffles
DOI: 10.48597/vpmt-d63g
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/vvqm-cuwe
title: Measurement of Sulphate_corrected at High Muffles

description: Measurement of Sulphate_corrected at High Muffles
DOI: 10.48597/whyv-rdxg
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/xd9n-eue9
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/xgn4-y7dv
title: Measurement of Inorganics in precipitation at Lough Navar

description: Measurement of Inorganics in precipitation at Lough Navar
DOI: 10.48597/xjbu-td88
title: Measurement of Sulphate_corrected at Lough Navar

description: Measurement of Sulphate_corrected at Lough Navar
DOI: 10.48597/yaka-f856
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/ye6c-dq5q
title: Measurement of Inorganics in precipitation at Lough Navar

description: Measurement of Inorganics in precipitation at Lough Navar
DOI: 10.48597/yrby-wr27
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/yyfz-4k8z
title: Measurement of Sulphur_dioxide at Yarner Wood

description: Measurement of Sulphur_dioxide at Yarner Wood
DOI: 10.48597/zdnk-8m6d
title: Measurement of Inorganics in precipitation at Yarner Wood

description: Measurement of Inorganics in precipitation at Yarner Wood
DOI: 10.48597/258s-99e2
title: Measurement of Sum_ammonia_and_ammonium at Westerland

description: Measurement of Sum_ammonia_and_ammonium at Westerland
DOI: 10.48597/27f3-h97c
title: Measurement of Heavy metals at Birkenes

description: Measurement of Heavy metals at Birkenes
DOI: 10.48597/29c8-3k3b
title: Measurement of Nitrogen_monoxide at Cabo de Creus

description: Measurement of Nitrogen_monoxide at Cabo de Creus
DOI: 10.48597/2y2r-tbg3
title: Measurement of Ozone at Lille Valby

description: Measurement of Ozone at Lille Valby
DOI: 10.48597/39sn-s223
title: Measurement of Nitrogen_dioxide at Rigi

description: Measurement of Nitrogen_dioxide at Rigi
DOI: 10.48597/3z5g-y7zt
title: Measurement of Sulphur_dioxide at Waldhof

description: Measurement of Sulphur_dioxide at Waldhof
DOI: 10.48597/3z6g-2ebw
title: Measurement of POPs (persistent organic pollutants) at Birkenes

description: Measurement of POPs (persistent organic pollutants) at Birkenes