cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f7c827cc
title: Water level data from select wetlands at Saint Marks National Wildlife Refuge:2010 - 2015

description: Small, seasonal pools and temporary ponds (&amp;amp;lt;4.0 ha) are the most numerous and biologically diverse wetlands in many natural landscapes. Thus, accurate determination of their numbers and spatial characteristics is beneficial for conservation, management, and persistence of biodiversity associated with these freshwater systems. We examined the utility of a topographic position index (TPI) landscape classification as a means to identify and classify depressional wetlands. We also assessed relationships between topographic characteristics and hydroperiod of known wetlands to allow hydrological characteristics to be extended to non-monitored locations. The data included herein were used to evaluate relations between topographic characteristics and wetland hydroperiod. The GIS files represent wetlands generated using the landscape classification to identify depressional areas in the landscape that were similar to field identified features. A table containing the data used to evaluate the relations between hydroperiod and topographic characteristics is also provided.
DOI: 10.17632/3vzfpggd9r.4
title:  CIRP overexpression

description: overexpression of CIRP and its mechanisms research
Cold inducible RNA-binding protein (CIRP) is a glycine-rich RNA-binding protein with an RNA recognition motif and a carboxyl-terminal domain. CIRP initially localized in the nucleus, under some stresses, especially cold stress, it can translocate to the cytoplasm and bind the 3’ regions of the target mRNA with its RNA-recognition motif, and then exerts an effect on regulating gene expression. CIRP expression in the brain is increased significantly under cold stress, and the upregulation of CIRP plays an important role on triggering the animal hibernation. These findings inspired the idea that highly expressed CIRP may induce neuroprotection. Our previous studies demonstrated that CIRP can inhibit neuron apoptosis, overexpressed CIRP under hypoxia can restore the proliferation of neuronal stem cells, suggesting a neuroprotective role of CIRP. We hypothesized that highly expressed intracellular CIRP with minimal extracellular distribution could achieve a most positive effect on neuroprotection. Then the pathway underlying intracellular CIRP expression may provide new clue for a practical neuroprotection protocol. CIRP overexpression was established on a glial cell line, SHG 44, through transfection of lentivirus with CIRP. 
. The effects of CIRP overexpression on the cell viability were evaluated by MTT assay after treatment with oxidation, hypoxia, neurotoxicity, and glucose deprivation. To explore the relationship between highly expressed CIRP and some neuroprotective factors, the mRNA expressions of these factors were analyzed by Real-time polymerase chain reaction. Then Double immunohistochemistry and western blot were used to determine the increased expressions.
DOI: 10.17632/nvmsbtpn2h.1
title: Ontology-style relation annotation datasets: Japanese traffic rules of the road and SemEval-2010 Task 8

description: Each dataset is in two different formats: (1) Conventional annotation (Normal-RoR stands for the Japanese traffic Rules of the Road) and (2) Ontology-Style Relation (OSR) annotation (OSR-RoR stands for Normal-RoR in OSR format, and OSR-SemEval stands for SemEval-2010 Task 8 in OSR format). 
--Normal-RoR: Japanese traffic Rules of the Road dataset that are in conventional annotating format using direct links to maintain relationships between entities. 

----Normal-RoR_all.json: Contain the whole dataset.
----Folders (1, 2, 3, 4, 5): Contain the five-crossed validating data created from the Normal-RoR.json:
------train.json: Training dataset
------dev.json: Validating dataset
------test.json: Testing dataset

----OSR-RoR: Japanese traffic Rules of the Road dataset that are in Ontology-Style Relation (OSR) annotating format using relation mentions and some RDF standard properties to maintain relationships between entities. 
----OSR-RoR_all.json: Contain the whole dataset.
----Folders (1, 2, 3, 4, 5): Contain the five-crossed validating data created from the OSR-RoR.json:
------train.json: Training dataset
------dev.json: Validating dataset
------test.json: Testing dataset

----OSR-SemEval.json: SemEval-2010 Task 8 dataset that are in Ontology-Style Relation (OSR) annotating format using relation mentions and some RDF standard properties to maintain relationships between entities. 

The differences between the conventional annotation and the OSR are: (1) In the conventional annotation, a direct link is used to maintain relationship between two entities, and (2) In OSR, a relation mention, which is a word or phrase that can represent relationships, is used to maintain relationship between two entities by using “domain” and “range” connecting from the relation mention to the two entity mentions.
DOI: 10.17632/rdfjx7f59v.1
title: Desmoplastic melanoma treated with wide local excision or Mohs micrographic surgery – rates of positive margins, local recurrence, and repeat surgeries [Supplement]

description: Supplemental data for the Research Letter, "Desmoplastic melanoma treated with wide local excision or Mohs micrographic surgery – rates of positive margins, local recurrence, and repeat surgeries", published in the Journal of the American Academy of Dermatology
DOI: 10.17632/6mx2fgdfzf.1
title: SIGNIFICANCE, INDICATORS AND MEASUREMENT HUMAN DEVELOPMENT

description: HUMAN DEVELOPMENT
DOI: 10.17632/y8nxxzyszy.1
title: Data from the National Health and Nutrition Examination Survey 2011-2018

description: This dataset stores the data used in the article "Association of Blood Mercury Levels with Bone Mineral Density in Adolescents Aged 12–19", including "origin data" and "multiple imputation". For more information, please contact the corresponding author Mingyi Zhao, zhao_mingyi@csu.edu.cn.
DOI: 10.17632/hdb93dwt2x.3
title: An open design for a low-cost open-loop subsonic wind tunnel for aerodynamic measurement and characterization 

description: A wind tunnel is an essential device for aerodynamic modeling and measurement. High cost and relatively huge size with no open market design hinder the wind tunnel from being widely available in laboratory design for universities and small R&D companies, particularly in a developed country with limited research funding. Thus, most aerodynamic modeling and measurement are done by simulating through computer software which leads to high deviation as the nature of wind is unpredictable. This project aims to provide an open design for a relatively low-cost wind tunnel that universities and R&D companies can quickly adapt. An open design for an open-loop wind tunnel is presented in this article. The proposed wind tunnel design is specifically intended to help the researcher with the aerodynamic measurement with minimum cost for building, customizable design, and reliable measurement. The components, parts, and equipment use the widely available part, which can be obtained across the globe. Validation and characterization are done using software simulation and actual measurement through the device. The proposed design can meet the criteria for aerodynamic measurement and can help the researcher provide a better analysis by combining the actual measurement and software simulation
DOI: 10.17632/7nn9czh4zt.1
title: m6A-sac-seq-SI

description: Supplementary Information for m6A-sac-seq
DOI: 10.17632/x8pxys7pwv.1
title: Supplementary Material for Domain-Specific Languages for the Automated Generation of Datasets for Industry 4.0 Applications

description: Artefacts for the evaluation of the work presented in the article entitled "Domain-Specific Languages for the Automated Generation of Datasets for Industry 4.0 Applications".
DOI: 10.17632/8649rsc8dz.1
title: LINF_310018600

description: Protein of unknown function (DUF3638)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yt6t6sn4b4.1
title: LINF_310017800

description: monoglyceride lipase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2gk3jvysk8.1
title: LINF_310017700

description: amidohydrolase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rn8yvtmtxx.1
title: Montelukast effect on chicken neuron proteomics

description: Proteomics data from chicken neurons treated with montelukast.
Cells were collected for protein extraction and mass spectrometry-based proteomics under a shotgun proteomics approach on a Bruker Impact II QqTOF. Raw data were converted to mzXML with ProteoWizard. For more info, please refer to the associated paper or contact the authors.
DOI: 10.17632/nx665b6grk.1
title: LINF_310018200

description: Cytochrome b5-like Heme/Steroid binding domain containing protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/t5cm7bttm2.1
title: LINF_310018700

description: H(+)-exporting diphosphatase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/6jphhgnrt8.1
title: Montelukast effect on mouse proteomics

description: Proteomics data from various organs from mice treated with montelukast.
Organs/tissues were collected for protein extraction and mass spectrometry-based proteomics under a shotgun proteomics approach on a Bruker Impact II QqTOF. Raw data were converted to mzXML with ProteoWizard. For more info, please refer to the associated paper or contact the authors.
DOI: 10.17632/b2437352ky.2
title: Dataset of dimensionless operating conditions for welding and metal additive manufacturing

description: The present dataset contains the dimensionless operating conditions obtained by processing a wide range of welding and  metal Additive Manufacturing (AM) process parameters through a unified theoretical framework based on the Rosenthal solution [1]. The exploratory data analysis covered Arc and Beam Welding (AW and BW, respectively) on various materials, joint types, and bead sizes ranging from 0.5 to over 10 mm.  As for AM, we considered Laser Metal Deposition (LMD) and Selective Laser Melting (SLM) on steel, Al, Ni, Ti, Cu, and Co-Cr alloys by limiting the research to the last five years of published literature.

Nomenclature:
U	Velocity magnitude
P	Power	
p	Welding power (AW and BW)
d	Distance between adjacent scan lines (SLM)	
s	Nominal layer thickness (SLM)	
Τ0	Initial or preheating temperature
R ̅  	Melt pool half-width	
Ar	Melt pool aspect ratio
Ũ	Dimensionless velocity	
P ̃	Dimensionless power

Welding joint types are identified by the initials B, L, and T, standing for Butt, Lap, and T- joints, respectively.

[1] M. Moda, A. Chiocca, G. Macoretta, B.D. Monelli, L. Bertini, Technological implications of the Rosenthal solution for a moving point heat source in steady state on a semi-infinite solid, Mater. Des. (2022). https://doi.org/10.1016/j.matdes.2022.110991
DOI: 10.17632/52nc7537mc.1
title: Neurodevelopmental Patterns of White Matter Transformation during the Early Postnatal Period

description: This dataset includes:
1) T2w Template from the dHCP datasets 
2) 4D weekly maps of i) average T2w; ii) average T2w/T1w signal ratio; iii) average neurite density index [NODDI]; iv) average free water map [NODDI]. All are derived from the dHCP study.
3) NMF results - NeWMaPs from the dHCP study across multiple resolutions (ranging from 2-20 NMFs).
DOI: 10.5517/ccdc.csd.cc2bxxx3
title: CCDC 2172756: Experimental Crystal Structure Determination

description: Related Article: Yue Guo, Jiajing Wu, Wenlong Liu, Sheng-Ping Guo|2022|Inorg.Chem.|61|11514|doi:10.1021/acs.inorgchem.2c01796
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2byz8k
title: CCDC 2173759: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frey, Matthew T. Figgins, Gerard P. Van Trieste, III, Raanan Carmieli, David C. Powers|2022|J.Am.Chem.Soc.|144|13913|doi:10.1021/jacs.2c05562
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8sm2
title: CCDC 2183194: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, L. Russo|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20449806
title: List of articles retrieved from the three databases search (GS, PubMed, WoS) using keywords for cashew diseases, prior to duplicates removal and data curation. Authors, Article title, Publication Year, DOI and Database.

description: The aim of this study was to systematically review the available scientific data on cashew diseases, to identify current gaps in the literature, and to reveal the most important diseases and causal pathogens affecting its productivity, linking their distribution with that of cashew producing regions across the world. Information on the status of cashew diseases is vital for the stakeholders to improve the cashew value chain and constitutes a baseline for the design of efficient strategies to control disease spreading. This systematic review was performed according to the PRISMA guidelines (Moher, 2009). We searched three electronic databases: PubMed, Web of Science (WoS) and Google Scholar. The search was conducted on the 15/04/2022 with the following set of keywords: (1) cashew AND disease; (2) cashew AND diseases* AND (bacteria* OR fungi*); (3) first report cashew. Here we provide the total of 538 records retrieved from the three freely available electronic databases used in the present search – PubMed, WoS and Google Scholar.
DOI: 10.6084/m9.figshare.20379720.v1
title: raw_and_intermediate_files.zip

description: These are raw data and intermediate files generated during analyses of the manuscript. Github link with code: https://github.com/sruthi-hub/Aging_information_theory_TMS <br> <br> We hope that sharing these files makes the work reproducible. Please reach out if you have any questions or concerns. <br> Edit: The 'clean_ordered_facscountmatrix8dec.csv' used in the channel capacity (Figure 2) code is the same as 'nonzero_10cutoff_facscountmatrix8dec.csv'. Please feel free to rename it when you run the code.
DOI: 10.6084/m9.figshare.20379720
title: raw_and_intermediate_files.zip

description: These are raw data and intermediate files generated during analyses of the manuscript. Github link with code: https://github.com/sruthi-hub/Aging_information_theory_TMS <br> <br> We hope that sharing these files makes the work reproducible. Please reach out if you have any questions or concerns. <br> Edit: The 'clean_ordered_facscountmatrix8dec.csv' used in the channel capacity (Figure 2) code is the same as 'nonzero_10cutoff_facscountmatrix8dec.csv'. Please feel free to rename it when you run the code.
DOI: 10.5517/ccdc.csd.cc2bg0ys
title: CCDC 2158435: Experimental Crystal Structure Determination

description: Related Article: M. Szafrański, Z. Tylczyński, M. Wiesner, P. Czarnecki, V.V. Ghazaryan, A.M. Petrosyan|2022|Materials and Design|220|110893|doi:10.1016/j.matdes.2022.110893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2btgrd
title: CCDC 2169434: Experimental Crystal Structure Determination

description: Related Article: Shihui He, Shiqiang Hao, Jiawei Lin, Na Wang, Jindong Cao, Zhongnan Guo, Christopher Wolverton, Jing Zhao, Quanlin Liu|2022|Inorg.Chem.|61|11973|doi:10.1021/acs.inorgchem.2c01730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxm0x
title: CCDC 2172449: Experimental Crystal Structure Determination

description: Related Article: Shihui He, Shiqiang Hao, Jiawei Lin, Na Wang, Jindong Cao, Zhongnan Guo, Christopher Wolverton, Jing Zhao, Quanlin Liu|2022|Inorg.Chem.|61|11973|doi:10.1021/acs.inorgchem.2c01730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c4bc7
title: CCDC 2178908: Experimental Crystal Structure Determination

description: Related Article: Qi Li, Qian Zhang, Zhen-Zhen Xue, Ji-Xiang Hu, Guo-Ming Wang|2022|Inorg.Chem.|61|10792|doi:10.1021/acs.inorgchem.2c01019
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6974665
title: PanDDA files from a ligand screen against the NSP3 macrodomain of SARS-CoV-2 - ligands from fragment merging/linking and virtual screening

description: This deposition contains the X-ray diffraction data used to run PanDDA in the ligand screen against the NSP3 macrodomain of SARS-CoV-2 described in Gahbauer et al. 2022 (doi: https://doi.org/10.1101/2022.06.27.497816). mac1_pandda.zip contains the structure factor intensities, PanDDA input/ouput and refined models/maps. A description of the files can be found in the README file. mac1_ligand-bound_states.zip contains the ligand-bound states extracted from the multi-state PDB files.
DOI: 10.5281/zenodo.6688238
title: PanDDA files from a ligand screen against the NSP3 macrodomain of SARS-CoV-2 - ligands from fragment merging/linking and virtual screening

description: This deposition contains the X-ray diffraction data used to run PanDDA in the ligand screen against the NSP3 macrodomain of SARS-CoV-2 described in Gahbauer et al. 2022 (doi: https://doi.org/10.1101/2022.06.27.497816). mac1_pandda.zip contains the structure factor intensities, PanDDA input/ouput and refined models/maps. A description of the files can be found in the README file. mac1_ligand-bound_states.zip contains the ligand-bound states extracted from the multi-state PDB files.
DOI: 10.5281/zenodo.5071216
title: Authigenic rhenium, manganese and opal concentrations in the Deep South Atlantic from 370 to 450 ka

description: This data reports measured concentrations of the trace elements rhenium and manganese, the major component biogenic opal and the estimated fraction of rhenium and manganese that are authigenic in nature (aRe and aMn) from the sediment record of Ocean Drilling Program Site 1094 in Atlantic sector of the Southern Ocean for the time period spanning 370 and 450 thousands years.
description: Funded by the US National Science Foundation, Award 1658445.
DOI: 10.6084/m9.figshare.20383014.v13
title: Complete assembly, annotation of virulence genes and CRISPR editing of the genome of Leishmania amazonensis PH8 strain

description: <em>Leishmania amazonensis</em> is one of the etiological agents of tegumentary and visceral leishmaniasis. Genome studies focusing on genes encoding virulence factors that play crucial roles in the establishment of the infection constitute an essential step towards the molecular characterization of a protozoan parasite that is being increasingly recognized as a significant human pathogen. Here, we report the sequencing and assembly of the <em>L</em><em>. amazonensis </em>PH8 strain combining data from long PacBio reads, short Illumina reads and synteny with the <em>Leishmania mexicana</em> genome. The final assembly, composed of 34 chromosomes, represents a genome of ~32 Mb with 8317 annotated genes. Several multigene families encoding virulence factors, such as A2, amastins, metalloproteins GP63 and cysteine proteases, were identified and compared to their annotation in the genomes of other <em>Leishmania</em> species. The <em>L. amazonensis </em>PH8 strain genome has 27 genes encoding all four sub-classes of amastins (α, β, γ and δ), 5 genes encoding A2 antigens, 9 genes encoding the metalloprotease GP63 and 76 genes encoding cysteine proteases. For all gene families analysed, we identified a larger number of copies and presented a more complete gene repertoire associated with <em>L. amazonensis </em>virulence factors, compared to previously published genomes. As they have been recently recognized as virulence factors essential for disease establishment and progression of the infection, we have also identified 14 genes encoding proteins involved in the parasite iron and heme metabolism and compared them to this gene repertoire in other Trypanosomatids. To follow these studies with a genetic approach that would allow us to directly address the role of these virulence factors, we tested two CRISPR-Cas9 protocols to generate <em>L. amazonensis</em> knockout cell lines. Using the Miltefosine Transporter (MT) gene as a proof of concept, we transfected promastigotes expressing the <em>Streptococcus pyogenes</em> Cas9 with <em>in vitro</em> transcribed sgRNA targeting this gene. As an alternative protocol, promastigotes were transfected with recombinant <em>Staphylococcus aureus </em>Cas9 complexed with sgRNAs. With both strategies, we were able to disrupt the MT gene with high efficiency, as shown by PCR and restriction digestion analysis as well as the development of miltefosine-resistant parasites.
DOI: 10.5281/zenodo.5071215
title: Authigenic rhenium, manganese and opal concentrations in the Deep South Atlantic from 370 to 450 ka

description: This data reports measured concentrations of the trace elements rhenium and manganese, the major component biogenic opal and the estimated fraction of rhenium and manganese that are authigenic in nature (aRe and aMn) from the sediment record of Ocean Drilling Program Site 1094 in Atlantic sector of the Southern Ocean for the time period spanning 370 and 450 thousands years.
description: Funded by the US National Science Foundation, Award 1658445.
DOI: 10.6073/pasta/94985246e4c29900e106d2b911a08624
title: Land cover classification of the central Arizona-Phoenix area using Landsat (MSS) data - year 1973

description: These data represent a land use classification of the central Arizona-Phoenix area. They were created using a Landsat MSS image for the year 1973.