cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/6r81rt
title: An annotated Avian Influenza dataset from two event-based surveillance systems

description: These dataset concerns Avian Influenza (AI) data from news items (articles) collected by two event-based surveillance systems; HealthMap and PADI-Web published between 2018 and 2019. Collected articles were manually annotated by relevance for epidemic intelligence purposes. A relevant article reports one epiemiological avian influenza event (outbreak) or more while, an irrelevant article is related to sanitary/political/economic measures or mentions another disease. This dataset can be used to train or evaluate classification approaches and classify these AI events by relevance. The structure of the dataset is as follow: EBS: name of the event-based surveillance systems that detected the event (HealthMap or PADI-Web in this case) Country: Name of the country where the event happened Place_name: Name of the administration, city or district where the event happened Disease_name: Name of the disease that is reported in the article Species_name: Name of the affected host that is reported in the article Alert_id: Event identifier Source: Name of the news outlet reporting the article. href: URL information of the article reporting the considered event. Note that multiple article can report same event. Issue_date: Date of the article publication Manualclass: Manual classification (Relevant or Irrelevant) lon: Longitude for the spacial entity lat: Lattitude fot the spacial entity
DOI: 10.57745/7ojnoo
title: Main Spectra Profiles (MSP) compatibles with the Brucker MS system for identification of plant-pathogenic bacteria

description: Description: In this folder, are stored the individual main spectra profiles (MSP) produced in the framework of the Euphresco project 2018-A-271 ‘Rapid identification of plant-health related bacteria by MALDI-TOF mass spectrometry (MALD-ID)’ The list of MSP is available in the file “List MSP Mald-ID project-Plant pathogenic bacteria.xlsx” present in this folder. They are classified following the genera of the strain used for creating them. Note that Duffyella spp. MSPs are classified with the Erwinia spp. MSPs These MSPs can be included in the built-in program of the Brucker MS system, permitting the analysis of spectra along with the spectra already provided by Brucker. Rights: These MSPs are available, under licence CC BY-NC-SA. In particular, this licence allows you to remix, adapt, and build upon this reference collection for your work non-commercially, as long as you credit this data and license any new reference collection build upon this data under identical terms. No reference file from this work must be marketed as such or included in any form of commercially sold database but the authors expressly permit the application of the provided reference files for diagnostic purposes. Format: The individual MSPs are on the format .btmsp Among the Erwinia MSPs, an additional file “Erwinia.btmsp” contains all the Erwinia MSPs as a single file. Relation: These MSP are part of the EPPO standard: PM 7/ NEW Matrix assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) for the identification of plant pathogenic bacteria Source: These MSP are excerpted from: Euphresco project 2018-A-271 ‘Rapid identification of plant-health related bacteria by MALDI-TOF mass spectrometry (MALD-ID)’ available from https://drop.euphresco.net/search?title%5B%5D=euphresco+project+report
DOI: 10.57745/8ljgq9
title: Cartographie des scolytes par la méthode fordead - Juin 2023

description: Ce dataset contient les résultats de la détection des anomalies dues aux scolytes par la méthode fordead sur les régions Grand-Est, Bourgogne-Franche-Comté et les trois départements Ain, Savoie et Haute-Savoie à partir des données Sentinel-2 disponibles fin Juin 2023. Le dataset contient un fichier readme donne des détails sur les différentes données, ainsi qu'un fichier pdf "analyse_surface" avec quelques graphiques à partir des résultats.
DOI: 10.57745/5odv0c
title: Periconia digitata gene fasta file

description: The gene fasta file from the gene models prediction was done with the fully automated pipeline EuGene-EP version 1.6.5 (Sallet, Gouzy, & Schiex, 2019).
DOI: 10.57745/5tjjza
title: Innovative cropping systems designed to reach both environmental and production targets: data set of biotic and abiotic variables from a twelve-year French field trial.

description: The data set describe variables collected from a French (N 48.84°, E 1.95°) field trial, over a twelve-year period (2009-2020), in which four innovative cropping systems designed to reach multiple environmental and production goals were assessed. Both biotic and abiotic variables were measured. In a previous data paper, we focused on nitrogen (N) fluxes collected from two systems, over eight years (2009-2016). In the present one, we enlarge the scope of the variables, including more crop descriptions and environmental indicators, from the all four systems, and over a longer period (2009-2020). The biotic data are: growth stages, aboveground plant N content and biomass collected at different growth stages according to the species, yield components of all the crops, yield harvested with a combine machine, crop sequences. No weed, crop disease, and pest’s data are described. The abiotic data are soil physical and chemical properties (i.e. texture, calcareous content, pH, organic carbon (C) contents, and N contents) collected at different assessment periods. All agricultural practices and climate were regularly recorded, and the treatment frequency indexes and the energy consumptions were computed. The four innovative cropping systems were designed with new combinations of agricultural practices; they differed in terms of pesticide uses, N inputs, tillage practices, and crop sequences. These data could be used for benchmark to design low-input systems, to improve models for parameterization and validation, and to increase the predictive accuracy of models of growth and development for crops, specifically orphan species as linseed, faba bean of hemp, and soil C and soil N fluxes in original conditions.
DOI: 10.57745/6dvlzw
title: Suivi des hauteurs de nappe sur les bassins versants du Bouron et du Tagon en Gironde

description: Le suivi des hauteurs de nappe sur les bassins versants du Bouron et du Tagon a été initié par la thèse de Marie Guillot soutenue en décembre 2011 : Analyse retrospective des relations nappe_végétation de sous bassins versants forestiers de la rivière Leyre Le bassin versant du Bouron se situe entre les communes de Belin-Beliet et d'Hostens (en Gironde) et 7 sites de mesures ont été retenus : Hillan, Les Gestets, Retis, Grand Cal, Fraye, Lembarras et Pijoulets. Le bassin versant du Tagon se situe entre les communes de Biganos et Marcheprime (en Gironde) et 5 sites ont été retenus : Vigneau, Aiguemorte , Matoucat, Les Gestets et Mongrand. Les mesures, débutées en 2009, ont été réalisées en continu sur les sites énumérés ci-dessus, avec une acquisition toutes les 1/2h, grâce à un enregistreur de type Hobo U20, capteur autonome de niveau d'eau avec interface optique USB. La compensation de pression barométrique est réalisée avec un deuxième enregistreur Hobo Water Level sur chaque bassin versant. Dans les puits équipés avec un enregistreur, une mesure manuelle de contrôle est réalisée à l’aide d’une sonde de mesure de hauteur d’eau « HYDROSEN » de chez SILEX INTERNATIONAL. D'autres puits non équipés par des Hobos, ont été suivis par des mesures ponctuelles grâce à la sonde HYROSEN : - 5 puits DFCI et 2 puits CEMAGREF pour le Tagon - 2 puits privés sur le site de Hillan pour le Bouron Toutes ces informations sont consignées et détaillées dans le document protocole_suivi_nappe_plioquaternaire.pdf. En 2015, le Bassin versant du Bouron a été équipé d'un nouveau système de mesure de hauteur de nappe type Campbell CS451 avec une transmission des données par modem. Les mesures ont été stoppées en 2022 suite aux méga-feux de l'été qui ont détruit la plupart des sites. En 2019 l'acquisition sur le bassin versant du Tagon a été stoppée suite aux dysfonctionnements des capteurs de type HOBO vieillissants.
DOI: 10.57745/71ds6f
title: Periconia digitata CDS fasta file

description: The CDS fasta file from the gene models prediction was done with the fully automated pipeline EuGene-EP version 1.6.5 (Sallet, Gouzy, & Schiex, 2019).
DOI: 10.57745/7d2zb9
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : S Fleuves côtiers de l'Adour-Garonne

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique S Fleuves côtiers de l'Adour-Garonne Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/7ntn12
title: Manuel de formation 'Utilisation des Systèmes d'Informations Géographiques sous R'

description: Manuel support d'une formation SIG via les librairies R cet ouvrage de plus de 180 pages est composé de 4 parties : i) Utilisation des vecteurs, ii) utilisation des rasters, iii) visualisation des données et iv) utilisation de sources réseaux (bases de données et services OGC). Il complète et dépasse largement les informations fournies lors des formations.
DOI: 10.57745/55pnu2
title: Data for publication: Exploration of preferential affiliative relationships in pigs

description: Behavioural datasets for the exploration of affiliative relationships in pigs
DOI: 10.57745/5cfhxn
title: Breedwheat - BWP3 extended diversity panel

description: Genotyping and phenotyping data of BWP3 diversity panel
DOI: 10.57745/6g31ve
title: Metasimfood Data Management Plan

description: Data Management Plan for the METASIMFOOD project.
DOI: 10.57745/5wb9kg
title: Air-Rail Passenger Demand Instances

description: This dataset containes simulated air-rail passenger demand instances from one week of December 2019. The associated flight and train schedules for each day are also provided.
DOI: 10.57745/789eyo
title: Effects of plant-based diet in first month of feeding of alevin rainbow trout (Oncorhynchus mykiss) on gustatory nutrient sensing systems developpement

description: les données présentées sont issus d'une expérience de nutrition à partir d'un aliment commercial (C) vs un aliment 100% végétal (V) et ceux du premier repas jusqu'à 30 jours chez des alevins de truites arc-en-ciel. des prélèvements ont été effectués 5 jours (T05) et 30 jours (T30) après le premier repas et ceux 16h avant le repas (16hPP), 20 minutes (20mns) après le repas et 6h après le repas (6hPP). des prélèvements de langue, de cerveau et d'intestin ont été réalisées. Sur ces échantillons des qPCR ont été réalisées en premier lieu sur la langue pour observer l'effet des aliments sur les récepteurs du gout et des nutriments sur la langue, sur les neuropeptide alimentaire dans le cerveau et des hormones intestinales dans l'intestin. De plus des analyses par HPLC ont également été réalisés sur la langue en analysant la voie des monoamines de la sérotonine (5-HT) et de son produit de dégradation (5-HIAA) et leur rapport (5-HIAA/5-HT). une analyse de la voie de la L-DOPA a également été réalisée avec son produit de dégradation (HVA) et le rapport (HVA/L-DOPA). Les mêmes échantillons (aliment, timing) ont été utilisés que pour les analyses qPCR.
DOI: 10.57745/7xkgjf
title: Dataset illustrating the disruptive impact of rainfall on the diurnal periodicity of airborne wheat rust spores under field conditions.

description: This dataset was collected in 1999 at INRAE Grignon (France) and is used to illustrate the disruptive impact of rainfall on the diurnal periodicity of airborne wheat rust spores under field conditions. Over more than two months, bi-hourly spore counts from Burkard traps were integrated with detailed meteorological data, revealing both seasonal and diurnal patterns. Rain data we also collected. Rain events either amplified spore concentrations—by up to 25-fold through a 'rain-puff' effect—or depletes them via ‘wash-out’ and ‘wash-off’. Rains events were classified into categories with distinct impacts: ‘precursor’ rains often trigger spore release, while ‘follower’ (and prolonged rains) reduce airborne spore concentrations. Moreover, differences in the dispersal dynamics of Pst and Pt were observed, and some were linked to how humidity and wind influence spore clustering.
DOI: 10.57745/8oij5t
title: Données de réplication pour : National estimation of soil organic carbon storage potential for arable soils: A data-driven approach coupled with carbon-landscape zones

description: Soil organic carbon (SOC) is important for its contributions to agricultural production, food security, and ecosystem services. Increasing SOC stocks can contribute to mitigate climate change by transferring atmospheric CO2 into long-lived soil carbon pools. The launch of the 4 per 1000 initiative has resulted in an increased interest in developing methods to quantity the additional SOC that can be stored in soil under different management options. In this work, we have made a first attempt to estimate SOC storage potential of arable soils using a data-driven approach based on the French National Soil Monitoring Network. The data-driven approach was used to determine the maximum SOC stocks of arable soils for France. We first defined different carbon-landscape zones (CLZs) using clustering analysis. We then computed estimates of the highest possible values using percentile of 0.8, 0.85, 0.9 and 0.95 of the measured SOC stocks within these CLZs. The SOC storage potential was calculated as the difference between the maximum SOC stocks and current SOC stocks for topsoil and subsoil. The percentile used to determine highest possible SOC had a large influence on the estimates of French national SOC storage potential. When the percentile increased from 0.8 to 0.95, the national SOC storage potential increased by two to three-fold, from 336 to 1020 Mt for topsoil and from 165 to 433 Mt for subsoil, suggesting a high sensitivity of this approach to the selected percentile. Nevertheless, we argue that this approach can offer advantages from an operational point of view, as it enables to set targets of SOC storage taking into account both policy makers' and farmers' considerations about their feasibility. Robustness of the estimates should be further assessed using complementary approaches such as mechanistic modelling. This dataset gather the raster used to produce the figure 6, 9 and 10. Projection lambert 93 France.
DOI: 10.57745/8t4vcd
title: End users' perceptions and home practices regarding infant food safety in Europe

description: Online survey among a panel of 3,585 European citizens on perceptions regarding infant food safety and home practices concerning four store-bought infant foods (powdered infant formula, sterilized vegetable mixed with fish, infant cereals, fruit puree). The survey is composed of 38 questions. It was designed using the Limesurvey tool, and launched in February 2023 by the Prolific polling company in 7 European countries, in their native languages: France, Germany, Greece, Ireland, Italy, Netherlands, Spain. In this dataset, the questions composing the survey are provided in English in pdf format, while answers to the survey are provided in csv format. This work is part of the Safe Food for Infants in the EU and China (SAFFI) project, which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N°861917.
DOI: 10.57745/9ygezr
title: ESR10_Exp1_microorganisms_growth

description: Microorganisms growth data expressed as colony-forming units per g of cheese.
DOI: 10.57745/5fhayq
title: TRYPTIF Data

description: Relative expression of genes in ileum, colon and four brain sites (hypothalamus, pre-frontal cortex, striatum and hippocampus) of Human Milk- and Infant Formula-fed piglets Correlations matrix between ileal, colonic or brain tissue variables (genes and phenotypic data) and ileal and colonic microbiota (r and p-values)
DOI: 10.57745/5w2lud
title: supplementary figures : Effects of bisphenols on the assisted reproductive technology outcomes considering the patient clinical parameters

description: This study analysed a cohort of 368 women undergoing assisted reproductive technology (ART) from 2019 to 2023. Four BPs (BPA, BPS, BPF, and BPAF) were quantified, and ART outcomes (e.g., oocyte count, embryo quality, and pregnancy rates) were assessed using regression models. GCs from 156 patients were cultured and exposed to BPS for 48 hours to evaluate progesterone and estradiol secretion based on clinical parameters.
DOI: 10.57745/6ifqyq
title: Design1to7_ClusteringMixedData

description: This entry contains sets of synthetic datasets to be used for benchmarking clustering algorithms for mixed (continuous and categorical) data. The synthetic datasets correspond to 9 simulation designs described in the README file.
DOI: 10.57745/7zclvb
title: Dataset of 16S,ITS,18S, 23S sequences for Alterfi phase 1

description: Dataset of 16S, ITS, 18S, 23S sequences for Alterfi phase 1 program. Ilumina raw reads of 212 Samples (R1 + R2) in fastq.gz format. There is 1 archive in .tar by dataset.
DOI: 10.57745/6pe4cy
title: H358 Office data

description: Raw data coming from 20 sensors deployed inside an office, located in Grenoble, with 3 desks during 1 year and a half. If you find this dataset useful or have any questions, please feel free to comment on the discussion dedicated to this dataset on the OTE forum .
DOI: 10.57745/6uotmn
title: Deliverable D3.2 Assessment Indicators - Demonstrated VC - CS-Swi

description: This file is part of the deliverable D3.2 of the European H2020 FAIRCHAIN. It structures all the data relevant for the description of the demonstrated value chain of the case study in Switzerland (CS-Swi). The description of the baseline covers the dimensions of co-creation business models and sustainability including environmental, economic and social perspectives.
DOI: 10.57745/78ufuc
title: Evaluation of the precision and accuracy of models of enteric methane emissions from ruminants using Bayesian inference_Code_Supplementary_material

description: This folder contains a list of extant empirical models of enteric methane production of ruminants, the supplementary material and the Python code associated to the research article "Evaluation of the precision and accuracy of models of enteric methane emissions from ruminants using Bayesian inference". This study aimed to compare the predictive accuracy and precision of ten total enteric methane production models, incorporating uncertainty using Bayesian inference.
DOI: 10.57745/aac2l0
title: Data of paper 'A narrow solution space for our common future on land' Soussana et al. in review, Nature

description: - Model code in R - ANCOVA procedure in R - Model outputs: Viable states of the land and food system for 2050 - Excel
DOI: 10.57745/6rysbe
title: Genetic and metabolic resources for Sipha maydis multi-symbiotic system

description: The Sipha maydis genome project generated a highly contiguous genome assembly of the cereal aphid Sipha maydis, revealing 24,453 protein-coding genes, including enzymes involved in an integrated metabolic network with two bacterial endosymbionts. This resource offers essential genetic and metabolic insights into the evolution and functioning of multi-symbiotic systems in insects. This dataset contains genomic and functional annotation information of S. maydis genome and its di-symbiotic system, together with the inferred reactions and metabolic networks of the corresponding metabolic databases SipmaCyc (Sipha maydis), Bucap_SmCyc (Buchnera aphidicola str. Sm midelt) and Sersy_SmCyc (Serratia symbiotica str. Sm midelt). The metabolic databases are available in the ArtSymbioCyc collection.
DOI: 10.57745/6tpzzz
title: Consumer behavior at sale point and consumption according to strawberry quality: how to use those data to evaluate food waste?

description: This dataset gathers 19 files containing all the data presented in the scientific article entitled Consumer behavior at sale point and consumption according to strawberry quality: how to use those data to evaluate food waste?
DOI: 10.57745/7hf7kg
title: Qualify a near-infrared camera to detect thermal deviation during aluminum alloy Wire Arc Additive Manufacturing

description: Data presented here are the part of the study: Dellarre A, Béraud N, Villeneuve F, Tardif N, Vignat F, Limousin M : Qualify a near-infrared camera to detect thermal deviation during aluminum Wire Arc Additive Manufacturing process Date : November 2022 e-mail : anthony.dellarre@grenoble-inp.fr Please use appropriate citations and referencing while using this dataset by any means. Contributing authors: Anthony Dellarre, Nicolas Béraud, François Villeneuve, Nicolas Tardif, Frédéric Vignat, Maxime Limousin Any further information could be asked by making a legitimate request to: Anthony Dellarre (anthony.dellarre@grenobe-inp.fr) and Nicolas Béraud (nicolas.beraud@grenoble-inp.fr) The folder archetecture is : - Wall referenced by its idle time * Row data : + video of near frame (.mp4) + near_camera (*.bmp) + scan (scan.stl) * Process data : + width of the wall function of the x coordinate and layer number (width.csv) + height of the wall function of the x coordinate and layer number (height.csv) + the thermal metric (surface of the thermal processed area) in function of the layer (thermalMetric.csv) Please refer to the paper for any further scientific details.
DOI: 10.57745/7qub6b
title: OSO vecteur 2021 - Département des Ardennes

description: Produit vectoriel de l'occupation du sol OSO 2021 sur le département des Ardennes
DOI: 10.57745/7uwnbm
title: MassiveFold data for target H1213 - T256

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/9lyias
title: AgroMetInfo 2.0

description: AgroMetInfo 2.0 est une application web permettant de visualiser en temps réel l'évolution d'indicateurs agroclimatiques sur l'ensemble de la France sur les petites régions agricoles.