cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/6c6-wva-krt
title: Eurema

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xs2-mdzt
title: PAN-00134299 - late medieval/post-medieval knife group C2.1

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00134299&lt;/p&gt;
description: Modified: 2023-06-29T09:53:17+02:00
DOI: 10.3535/6m3-761-4jb
title: Hesperiidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k4z-xrl-e0d
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4fn-dqj-dan
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5na-xeg-ydb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypt-9pk-azr
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xs2-mhq9
title: PAN-00105876 - flat-bottomed craft with posts and sharp bilge (carvel)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00105876&lt;/p&gt;
description: Modified: 2022-11-08T10:54:21+01:00
DOI: 10.3535/n6m-rd8-b2s
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y5g-ely-2ns
title: Eurema

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/re6-t6d-4de
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.yuas6c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "EstablishmentMeans is INTRODUCED"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090533-250525065834625/datasets/export for details.
DOI: 10.17026/dans-xs2-mvdz
title: PAN-00107982 - Knickfibel

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00107982&lt;/p&gt;
description: Modified: 2022-06-17T11:52:27+02:00
DOI: 10.3535/h4e-7x5-x7p
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yj0-ypb-hpg
title: Taenaris Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0lv-229-2xs
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwq-tsj-5ew
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3632498_d8
title: Additional file 10: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: SNP loci located in soybean LRR-RLK genes identified by analysis of the resequencing data of 25 wild soybeans and 31 cultivated soybeans. (XLSX 2377 kb)
DOI: 10.6084/m9.figshare.c.3632519_d6
title: Additional file 7: Table S6. of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: List of downregulated genes in the dxr mutant and their MapMan classification. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3632498_d9
title: Additional file 1: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: List of identified LRR-RLK genes in soybean. The ID, gene code, gene length, physical position on chromosome, number of exon/intron/UTR, length of amino-acid/signal peptide, number and position of TM, position of kinase domain for each soybean LRR-RLK gene annotated in this study were included. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3632519_d7
title: Additional file 1: Table S1.  of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: Summary of rice FST genes and number of related gene-indexed mutants collected from IRFGC and our Ds insertional mutants. (XLSX 1494Â kb)
DOI: 10.6084/m9.figshare.c.3632498_d10
title: Additional file 4: of Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean

description: Putative motifs of all GmLRR-RLKs in each subgroup predicted by MEME. Motifs were identified by MEME software using the deduced amino-acid sequences of GmLRR-RLKs in each group and the relative position of each identified motif was shown. (XLSX 3460 kb)
DOI: 10.6084/m9.figshare.c.3632519_d8
title: Additional file 4: Table S3. of Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response

description: Functional classification of 1022 characterized genes using MapMan analysis. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3632642_d2
title: Additional file 2: Table S2. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The blast results for the protein-coding genes of O. polyrhachis-furcata against PHI database. (XLS 385 kb)
DOI: 10.6084/m9.figshare.c.3632651_d1
title: Additional file 5: Table S5. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Metazoan parasite communities in Barbus spp. populations. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3632657_d1
title: Additional file 1 of Superpixel-based segmentation of muscle fibers in multi-channel microscopy

description: The MATLAB and C code, and the data files used in this project. (ZIP 9346 kb)
DOI: 10.6084/m9.figshare.c.3632651_d2
title: Additional file 4: Table S4. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: P-values of Bonferroni post-hoc tests. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3632642_d3
title: Additional file 7: Table S7. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Carbohydrate Esterase (CE) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632642_d4
title: Additional file 6: Table S6. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Polysaccharide Lyase (PL) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632651_d3
title: Additional file 2: Table S2. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Metazoan parasite abundance, prevalence and species richness in Barbus spp. populations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632642_d5
title: Additional file 5: Table S5. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

description: The number of genes in different Glycoside Hydrolase (GH) families, following the Carbohydrate-Active Enzymes Databases (CAZY), identified in O. polyrhachis-furcata and other nineteen fungi included in this study. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3632651_d4
title: Additional file 3: Table S3. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Results of ANCOVA tests. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3632651_d5
title: Additional file 1: Table S1. of Metazoan parasite communities: support for the biological invasion of Barbus barbus and its hybridization with the endemic Barbus meridionalis

description: Site names and their geographical coordinates. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3632798_d1
title: Additional file 1: Table S1. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: GO over representation analysis: This analysis table contains the raw data for the identification of GO terms over-represented in the 7d multi-stressor up-regulated, 7d multi-stressor down-regulated, 28d multi-stressor up-regulated, 28 multi-stressor down-regulated, 56 multi-stressor up-regulated, and 56 multi-stressor down-regulated subgroups. The table provides the GO-ID, GO Term, and number of terms found if over-represented in the subgroup (a blank entry indicates a lack of significance for that GO term). The total number of each GO terms found in the reference transcriptome is also included. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3632798_d2
title: Additional file 8: Table S8. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: Immune system process: This table provides all differentially expressed genes exceeding the confidence threshold (FDR ≤ 0.05) that are associated with the GO Term immune system process (GO:0002376) at 7d, 28d and 56d (n = 4). The table includes the gene sequence name from the reference transcriptome, the BLAST result description, the sequence length, the number of BLAST hits to that gene sequence, the minimum e-value of the BLAST hits, the mean similarity, the # of GO terms associated with that sequence, the list of those GO terms, the Enzyme Codes associated with that sequence, InterproScan results associated with that sequence, the log2 adjusted fold change in expression, the log2 counts per million (CPM) of the reads mapped to that sequence, and the p-value and FDR reflecting the confidence in the displayed differential expression of that gene. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3632801_d2
title: Additional file 10: Table S4. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Primers used for quantitative PCR for piRNA and mRNA. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3632798_d3
title: Additional file 4: Table S4. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: Cell death: This table provides all differentially expressed genes exceeding the confidence threshold (FDR ≤ 0.05) that are associated with the GO Term cell death (GO:0008219) at 7d, 28d and 56d (n = 4). The table includes the gene sequence name from the reference transcriptome, the BLAST result description, the sequence length, the number of BLAST hits to that gene sequence, the minimum e-value of the BLAST hits, the mean similarity, the # of GO terms associated with that sequence, the list of those GO terms, the Enzyme Codes associated with that sequence, InterproScan results associated with that sequence, the log2 adjusted fold change in expression, the log2 counts per million (CPM) of the reads mapped to that sequence, and the p-value and FDR reflecting the confidence in the displayed differential expression of that gene. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3632798_d4
title: Additional file 3: Table S3. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: Lipid metabolic process: This table provides all differentially expressed genes exceeding the confidence threshold (FDR ≤ 0.05) that are associated with the GO Term lipid metabolic process (GO:0006629) at 7d, 28d and 56d (n = 4). The table includes the gene sequence name from the reference transcriptome, the BLAST result description, the sequence length, the number of BLAST hits to that gene sequence, the minimum e-value of the BLAST hits, the mean similarity, the # of GO terms associated with that sequence, the list of those GO terms, the Enzyme Codes associated with that sequence, InterproScan results associated with that sequence, the log2 adjusted fold change in expression, the log2 counts per million (CPM) of the reads mapped to that sequence, and the p-value and FDR reflecting the confidence in the displayed differential expression of that gene. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3632801_d3
title: Additional file 5: Table S2. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Number of sequences produced by the primary or secondary biogenesis pathway. First column: absolute numbers of sequence reads with uridine at position1 (1U) and no adenine at the 10th position (10A) indicating piRNAs generated by the primary pathway. 2nd column: sequence reads with no uridine at position 1 but 10A. All other sequence reads were excluded. Only sequence reads mapping to germline, tumor or control samples in medaka and Xiphophorus were considered. 3rd column: ratio for 1U/10A as a measure for the preference of the primary or secondary biogenesis pathway was calculated. Column 4â  6: analogous to columns 1â  3, but with guanine instead of uridine and adenine. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3632798_d5
title: Additional file 6: Table S6. of Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

description: Heat shock related proteins: This table provides all genes associated with heat shock proteins found within the reference transcriptome regardless of expression/confidence level at 7d, 28d and 56d (n = 4). Each time-point sub-table is sorted by FDR (smallest first). The table includes the gene sequence name from the reference transcriptome, the BLAST result description, the sequence length, the number of BLAST hits to that gene sequence, the minimum e-value of the BLAST hits, the mean similarity, the # of GO terms associated with that sequence, the list of those GO terms, the Enzyme Codes associated with that sequence, InterproScan results associated with that sequence, the log2 adjusted fold change in expression, the log2 counts per million (CPM) of the reads mapped to that sequence, and the p-value and FDR reflecting the confidence in the displayed differential expression of that gene. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3632882_d1
title: Additional file 1: Table S1. of QuantiFERON conversion following tuberculin administration is common in HIV infectionÂ and relates to baseline response

description: Demographics and data for the 22 participants in study. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3632897_d1
title: Additional file 1: of Somatic healthcare utilisation patterns among older people with intellectual disability: an 11-year register study

description: Data concerning differences in proportions with at least one visit registration with respect to four different outcomes: planned/unplanned inpatient registrations/outpatient physician visits(year, and age group, odds ratios (OR) with 95 % confidence intervals) and data concerning differences in number of visits, registrations and LOS for individuals with at least one registration/visit (mean, standarddeviations, p-values for Mann–Whitney U-tests, and Jonckheere–Terpstra tests for trend). (XLSX 53 kb)
DOI: 10.15468/dl.77cyzy
title: Occurrence Download

description: A dataset containing 4703702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Japan",
 "Year 1978-2023"
 ]
}

 The dataset includes 4703702 records from 1099 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033945-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3632978_d1
title: Additional file 2: of Maternal smoking impacts key biological pathways in newborns through epigenetic modification in Utero

description: Lancaster_Pat. (XLSX 4 MB)
DOI: 10.6084/m9.figshare.c.3632987_d1
title: Additional file 2: Table S1. of Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells

description: RNA-seq and Riboprofiling data as well as computational scoring for annotated coding sequences and ORFs of noncoding transcripts (Microsoft Excel file). (XLSX 5949Â kb)
DOI: 10.6084/m9.figshare.c.3632978_d2
title: Additional file 1: of Maternal smoking impacts key biological pathways in newborns through epigenetic modification in Utero

description: SKAT_GeneScor. (XLSX 1 MB)
DOI: 10.6084/m9.figshare.c.3632987_d3
title: Additional file 3: Table S2. of Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells

description: RNA-seq and Riboprofiling data for upstream ORFs of annotated protein coding transcripts (Microsoft Excel file). (XLSX 8807Â kb)
DOI: 10.6084/m9.figshare.c.3632996_d1
title: Additional file 1: Table S1. of Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade

description: List of publicly available closed genomes included in this study. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3632996_d2
title: Additional file 5. of Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade

description: HMM_cry_log.sh. (SH 932 bytes)
DOI: 10.6084/m9.figshare.c.3633011_d1
title: Additional file 5: of Draft genome of the scabies mite

description: Locations and putative identities of scabies homologs for genes which are immunogenic and present in the salivary glands of ticks and are listed in [ 107 ]. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3632996_d3
title: Additional file 4: Table S4. of Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade

description: Absolute core genome SNP distance for 69 B. cereus group isolates. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3633011_d2
title: Additional file 2: of Draft genome of the scabies mite

description: Abundance of repetitive element types identified by RepeatMasker. (XLSX 115Â kb)
DOI: 10.6084/m9.figshare.c.3632996_d4
title: Additional file 3: Table S3. of Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade

description: Presence/absence of 36 virulence genes in whole genome sequences of 69 B. cereus group isolates. (XLSX 19 kb)
DOI: 10.14279/depositonce-22339
title: Supporting Information for Application of chemotactic behavior for life detection

description: One excellent biosignature for the present detection of microbial life on Earth is motility, leading to its growing interest within the astrobiological community as an observable attribute that, if detected during future in situ space missions, could point towards the existence of life on Mars or other celestial bodies. Microbial motility can be induced by various stimulants, including certain chemicals called chemoeffectors, leading to subsequent chemotaxis. Following this concept, this work examines the chemotactic affinities of the bacteria Bacillus subtilis and Pseudoalteromonas haloplanktis as well as the archaeon Haloferax volcanii for L-serine, which has been previously demonstrated to have a high chemoeffective potency across a wide range of species from all domains of life on Earth. Methodologically, we introduce here a novel approach for utilizing µ-slides that diverges from the more traditional long-term chemotactic assay in favor of a shorter time frame assay that only requires a simple blob detection algorithm for microbial detection. Given the technical, computational, and time constraints necessary for an in-situ life detection mission, this simplified approach could be a cost and resource-effective way to probe for potential chemotactic-responsive life. Overall, the results indicated that each of the three organisms showed chemotactic behavior toward L-serine, which, to our knowledge, is the first time that an L-serine-induced chemotactic response has been detected for H. volcanii.
DOI: 10.6084/m9.figshare.c.3633101_d7
title: MOESM8 of What are the effects of agricultural management on soil organic carbon in boreo-temperate systems?

description: Additional file 8. Articles Excluded at Full Text.
DOI: 10.6084/m9.figshare.c.3633122_d1
title: Additional file 1: of Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

description: NCBI accession, locus name, and details of SSR, primer design and DNA sequence for red raspberry (R. idaeus). Highlight indicates those loci tested in R. idaeus and R. occidentalis genotypes with results shown in manuscript TableÂ 1. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3633101_d8
title: MOESM9 of What are the effects of agricultural management on soil organic carbon in boreo-temperate systems?

description: Additional file 9. Long-Term Experimental (LTE) Sites Database.
DOI: 10.6084/m9.figshare.c.3633122_d2
title: Additional file 2: of Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

description: NCBI accession, locus name, and details of SSR, primer design and DNA sequence for black raspberry (R. occidentalis). Highlight indicates those loci tested in R. idaeus and R. occidentalis genotypes with results shown in manuscript TableÂ 1. (XLSX 93 kb)
DOI: 10.34965/i47639
title: 20240450
DOI: 10.6084/m9.figshare.c.3633122_d3
title: Additional file 3: of Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

description: Gene ontology term distribution for the categories Biological Process, Molecular Function, and Cellular Component. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3633137_d1
title: Additional file 1: of Demography and health of Pugs under primary veterinary care in England

description: Mapping systems that linked disorder terms between diagnosis-level precision, grouped-level precision and syndromic classifications. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3633122_d4
title: Additional file 4: of Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

description: Top ten longest unigenes aligned to the Gene Ontology database with BLAST results. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3633242_d1
title: Additional file 1: of Is adjunctive naturopathy associated with improved glycaemic control and a reduction in need for medications among type 2 Diabetes patients? A prospective cohort study from India

description: Codebook. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3633254_d1
title: Additional file 1: of Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer

description: â  Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancerâ   Additional results on predicted synthetic lethal genes. (XLSX 963 kb)