cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6477208
title: Elastic Anomalies across the α-β Phase Transition in Orthopyroxene: Implication for the Metastable Wedge in the Cold Subduction Slab

description: Here are the expeirmental data
DOI: 10.6084/m9.figshare.19654296
title: Additional file 10 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 10: Table S9. Differentially expressed (DE) genes in the PTD25 cell family, comprising: sheet PTD25_RSvsPTD25 (Comparison of genes, differentially expressed by PTD25_RS versus PTD25), sheet PTD25_RLvsPTD25 (Comparison of genes, differentially expressed by PTD25_RL versus PTD25), sheet Shared_PTD25_RS_AND_PTD25_RL (Comparison of genes, differentially expressed by either PTD25_RS versus PTD25, or PTD25_RL versus PTD25; sorted alphabetically [ID]), sheet Shared_PTD25_RS(sortDE)_RL (Comparison of genes, differentially expressed by both PTD25_RS versus PTD25, and PTD25_RL versus PTD25; sorted according to value of log2FoldChange in PTD25_RS vs PTD25); sheet Shared_PTD25_RS_RL(sortDE) (Comparison of genes, differentially expressed by both PTD25_RS versus PTD25, and PTD25_RL versus PTD25; sorted according to value of log2FoldChange in PTD25_RL vs PTD25); sheet Unique_PTD25_RS_NOT_RL vs PTD25 (Genes, differentially expressed by PTD25_RS versus PTD25, and not shared by genes differentially expressed by PTD25_RL versus PTD25), and sheet Unique_PTD25_RL_NOT_RS vs PTD25 (Genes, differentially expressed by PTD25_RL versus PTD25, and not shared by genes differentially expressed by PTD25_RS versus PTD25).
DOI: 10.6084/m9.figshare.19654296.v1
title: Additional file 10 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 10: Table S9. Differentially expressed (DE) genes in the PTD25 cell family, comprising: sheet PTD25_RSvsPTD25 (Comparison of genes, differentially expressed by PTD25_RS versus PTD25), sheet PTD25_RLvsPTD25 (Comparison of genes, differentially expressed by PTD25_RL versus PTD25), sheet Shared_PTD25_RS_AND_PTD25_RL (Comparison of genes, differentially expressed by either PTD25_RS versus PTD25, or PTD25_RL versus PTD25; sorted alphabetically [ID]), sheet Shared_PTD25_RS(sortDE)_RL (Comparison of genes, differentially expressed by both PTD25_RS versus PTD25, and PTD25_RL versus PTD25; sorted according to value of log2FoldChange in PTD25_RS vs PTD25); sheet Shared_PTD25_RS_RL(sortDE) (Comparison of genes, differentially expressed by both PTD25_RS versus PTD25, and PTD25_RL versus PTD25; sorted according to value of log2FoldChange in PTD25_RL vs PTD25); sheet Unique_PTD25_RS_NOT_RL vs PTD25 (Genes, differentially expressed by PTD25_RS versus PTD25, and not shared by genes differentially expressed by PTD25_RL versus PTD25), and sheet Unique_PTD25_RL_NOT_RS vs PTD25 (Genes, differentially expressed by PTD25_RL versus PTD25, and not shared by genes differentially expressed by PTD25_RS versus PTD25).
DOI: 10.6084/m9.figshare.19654299
title: Additional file 11 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 11: Table S10. Differentially expressed (DE) genes in Pcdh10-lacking PTD25 cells versus Pcdh10-lacking PTD7 cells.
DOI: 10.6084/m9.figshare.19654299.v1
title: Additional file 11 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 11: Table S10. Differentially expressed (DE) genes in Pcdh10-lacking PTD25 cells versus Pcdh10-lacking PTD7 cells.
DOI: 10.6084/m9.figshare.19654422.v1
title: Additional file 9 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 9: Table S8. Differentially expressed (DE) genes in the PTD7 cell family, comprising: sheet PTD7_RSvsPTD7 (Comparison of genes, differentially expressed by PTD7_RS versus PTD7), sheet. PTD7_RLvsPTD7 (Comparison of genes, differentially expressed by PTD7_RL versus PTD7), sheet. Shared_PTD7_RS_AND_PTD7_RL_alph (Comparison of genes, differentially expressed by either PTD7_RS versus PTD7, or PTD7_RL versus PTD7; sorted alphabetically [ID]), sheet Shared_PTD7_RS(sortDE)_RL (Comparison of genes, differentially expressed by both PTD7_RS versus PTD7, and PTD7_RL versus PTD7; sorted according to value of log2FoldChange in PTD7_RS vs PTD7); sheet Shared_PTD7_RS_RL(sortDE) (Comparison of genes, differentially expressed by both PTD7_RS versus PTD7, and PTD7_RL versus PTD7; sorted according to value of log2FoldChange in PTD7_RL vs PTD7); sheet Unique_PTD7_RS_NOT_RL vs PTD7 (Genes, differentially expressed by PTD7_RS versus PTD7, and not shared by genes differentially expressed by PTD7_RL versus PTD7), and sheet Unique_PTD7_RL_NOT_RS vs PTD7 (Genes, differentially expressed by PTD7_RL versus PTD7, and not shared by genes differentially expressed by PTD7_RS versus PTD7).
DOI: 10.6084/m9.figshare.19654422
title: Additional file 9 of Innovative mouse models for the tumor suppressor activity of Protocadherin-10 isoforms

description: Additional file 9: Table S8. Differentially expressed (DE) genes in the PTD7 cell family, comprising: sheet PTD7_RSvsPTD7 (Comparison of genes, differentially expressed by PTD7_RS versus PTD7), sheet. PTD7_RLvsPTD7 (Comparison of genes, differentially expressed by PTD7_RL versus PTD7), sheet. Shared_PTD7_RS_AND_PTD7_RL_alph (Comparison of genes, differentially expressed by either PTD7_RS versus PTD7, or PTD7_RL versus PTD7; sorted alphabetically [ID]), sheet Shared_PTD7_RS(sortDE)_RL (Comparison of genes, differentially expressed by both PTD7_RS versus PTD7, and PTD7_RL versus PTD7; sorted according to value of log2FoldChange in PTD7_RS vs PTD7); sheet Shared_PTD7_RS_RL(sortDE) (Comparison of genes, differentially expressed by both PTD7_RS versus PTD7, and PTD7_RL versus PTD7; sorted according to value of log2FoldChange in PTD7_RL vs PTD7); sheet Unique_PTD7_RS_NOT_RL vs PTD7 (Genes, differentially expressed by PTD7_RS versus PTD7, and not shared by genes differentially expressed by PTD7_RL versus PTD7), and sheet Unique_PTD7_RL_NOT_RS vs PTD7 (Genes, differentially expressed by PTD7_RL versus PTD7, and not shared by genes differentially expressed by PTD7_RS versus PTD7).
DOI: 10.6084/m9.figshare.19654459
title: Additional file 2 of Genotypic and phenotypic diversity among Komagataella species reveals a hidden pathway for xylose utilization

description: Additional file 2: Stoichiometric model of the central carbon metabolism plus xylose utilization reactions.
DOI: 10.6084/m9.figshare.19654459.v1
title: Additional file 2 of Genotypic and phenotypic diversity among Komagataella species reveals a hidden pathway for xylose utilization

description: Additional file 2: Stoichiometric model of the central carbon metabolism plus xylose utilization reactions.
DOI: 10.5281/zenodo.6483772
title: Stark et al. 2022_Linkages Between Participatory Natural Resource Management and Democratic Outcomes: A Review of the Evidence (Annex 2 and 5)

description: Technical Brief_Linkages Between Participatory Natural Resource Management and Democratic Outcomes: A Review of the Evidence <strong>Activity Title: </strong> Integrated Natural Resource Management <strong>Sponsoring USAID Office: </strong> Center for Environment, Energy, and Infrastructure <strong>Contract Number: </strong> 7200AA20F00010 <strong>Task Order Number: </strong> STARR II – 7200AA18D00020 <strong>Period of Performance: </strong> July 30, 2020 – July 19, 2025 <strong>Contracting Officer: </strong> Stella Alexander-Sergeeff <strong>COR: </strong> Ioana Bouvier <strong>Ceiling Price: </strong> $34,976,131 <strong>Contractor: </strong> DAI <strong>Date of Publication: </strong> April 2022 <strong>Author: </strong> Jeffrey Stark, Samantha H. Cheng, Erin Betley, Susan Telingator
DOI: 10.5281/zenodo.6483771
title: Stark et al. 2022_Linkages Between Participatory Natural Resource Management and Democratic Outcomes: A Review of the Evidence (Annex 2 and 5)

description: Technical Brief_Linkages Between Participatory Natural Resource Management and Democratic Outcomes: A Review of the Evidence <strong>Activity Title: </strong> Integrated Natural Resource Management <strong>Sponsoring USAID Office: </strong> Center for Environment, Energy, and Infrastructure <strong>Contract Number: </strong> 7200AA20F00010 <strong>Task Order Number: </strong> STARR II – 7200AA18D00020 <strong>Period of Performance: </strong> July 30, 2020 – July 19, 2025 <strong>Contracting Officer: </strong> Stella Alexander-Sergeeff <strong>COR: </strong> Ioana Bouvier <strong>Ceiling Price: </strong> $34,976,131 <strong>Contractor: </strong> DAI <strong>Date of Publication: </strong> April 2022 <strong>Author: </strong> Jeffrey Stark, Samantha H. Cheng, Erin Betley, Susan Telingator
DOI: 10.6084/m9.figshare.19654492
title: Additional file 1 of Identification of SARS-CoV-2 variants using viral sequencing for the Centers for Disease Control and Prevention genomic surveillance program

description: Additional file 1. Sample accession numbers submitted and successfully retrieved from GISAID.
DOI: 10.6084/m9.figshare.19654492.v1
title: Additional file 1 of Identification of SARS-CoV-2 variants using viral sequencing for the Centers for Disease Control and Prevention genomic surveillance program

description: Additional file 1. Sample accession numbers submitted and successfully retrieved from GISAID.
DOI: 10.6084/m9.figshare.19654599
title: Additional file 1 of Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

description: Additional file 1.
DOI: 10.6084/m9.figshare.19654599.v1
title: Additional file 1 of Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

description: Additional file 1.
DOI: 10.6084/m9.figshare.19654605
title: Additional file 3 of Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

description: Additional file 3.
DOI: 10.6084/m9.figshare.19654605.v1
title: Additional file 3 of Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

description: Additional file 3.
DOI: 10.6084/m9.figshare.19654662
title: Additional file 4 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 4. Additional_SER_video_files: The spectra of Flash170201 can be derived from these files. We cropped the video frames to reduce the file sizes. Ser-format videos can be viewed by an open-source application, “SER Player (2021).” (1) Flash170201.ser: Flash170201. The flash appears in the 51st-frame. The bright area at the upper right is the Aristarchus area. The original frame size is 960 × 592 pixels. We extracted one hundred frames of 200 × 200 pixels in size. The coordinate of their upper-left pixel is (670, 290) in the original frames, in which the coordinate of the upper-left pixel is (0, 0). We averaged 495 frames while shifting images to compensate for slight image motion in obtaining the background image. Therefore, the analyses of this cropped video may lead to slightly different results from ours. (2) TYC4665-715-1.ser: Comparison star. A faint star at the lower left is TYC4665-463-1. The original frame size is 960 × 592 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (355, 315) in the original frames. We averaged all frames while shifting images to compensate for slight image motion. (3) alpha-And_No5.ser: α And recorded at the center of the original video frames. The original frame size is 1936 × 1216 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (870, 538) in the original frames. We discarded five bad frames and averaged the other frames while shifting images to compensate for slight image motion. (4) alpha-And_No6.ser: α And recorded near the right edge of the original video frames. The original frame size is 1936 × 1216 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (1780, 538) in the original frames. We discarded one bad frame and averaged the other frames while shifting images to compensate for slight image motion. (5) dark_for_Flash170201.ser, dark_for_TYC4665-715–1.ser, dark_for_alpha-And_No5.ser, dark_for_alpha-And_No6.ser: Dark frames for the SER videos mentioned above. These were recorded while we covered the camera with an opaque cap. The camera settings were the same between the non-dark and dark videos.
DOI: 10.6084/m9.figshare.19654662.v1
title: Additional file 4 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 4. Additional_SER_video_files: The spectra of Flash170201 can be derived from these files. We cropped the video frames to reduce the file sizes. Ser-format videos can be viewed by an open-source application, “SER Player (2021).” (1) Flash170201.ser: Flash170201. The flash appears in the 51st-frame. The bright area at the upper right is the Aristarchus area. The original frame size is 960 × 592 pixels. We extracted one hundred frames of 200 × 200 pixels in size. The coordinate of their upper-left pixel is (670, 290) in the original frames, in which the coordinate of the upper-left pixel is (0, 0). We averaged 495 frames while shifting images to compensate for slight image motion in obtaining the background image. Therefore, the analyses of this cropped video may lead to slightly different results from ours. (2) TYC4665-715-1.ser: Comparison star. A faint star at the lower left is TYC4665-463-1. The original frame size is 960 × 592 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (355, 315) in the original frames. We averaged all frames while shifting images to compensate for slight image motion. (3) alpha-And_No5.ser: α And recorded at the center of the original video frames. The original frame size is 1936 × 1216 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (870, 538) in the original frames. We discarded five bad frames and averaged the other frames while shifting images to compensate for slight image motion. (4) alpha-And_No6.ser: α And recorded near the right edge of the original video frames. The original frame size is 1936 × 1216 pixels. We extracted one hundred frames of 120 × 100 pixels in size. The coordinate of their upper-left pixel is (1780, 538) in the original frames. We discarded one bad frame and averaged the other frames while shifting images to compensate for slight image motion. (5) dark_for_Flash170201.ser, dark_for_TYC4665-715–1.ser, dark_for_alpha-And_No5.ser, dark_for_alpha-And_No6.ser: Dark frames for the SER videos mentioned above. These were recorded while we covered the camera with an opaque cap. The camera settings were the same between the non-dark and dark videos.
DOI: 10.6084/m9.figshare.19654665.v1
title: Additional file 5 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 5. Addtitional_tool_files1: Source files of “ser_reduction.” This tool was used to subtract the dark frames from the SER format videos. Two header files (.h), four source files (.cpp), and a resource file (.rc) were built to create the executable file ser_reduction.exe by Visual Studio 2017 for × 86(32bit) Windows personal computers (The same applies hereafter). The comments in the source files are written in Japanese (The same applies hereafter).
DOI: 10.6084/m9.figshare.19654668.v1
title: Additional file 6 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 6. Addtitional_tool_files2: Source files of “ser_to_fits_csv.” This tool was used to extract a part of a frame where a lunar impact flash was recorded in an SER format video. The extracted image is saved as a CSV format file that can be loaded in Excel. It can also be saved as a FITS format file. Two header files (.h), five source files (.cpp), and a resource file (.rc) were built to create the executable file ser_to_fits_csv.exe.
DOI: 10.6084/m9.figshare.19654668
title: Additional file 6 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 6. Addtitional_tool_files2: Source files of “ser_to_fits_csv.” This tool was used to extract a part of a frame where a lunar impact flash was recorded in an SER format video. The extracted image is saved as a CSV format file that can be loaded in Excel. It can also be saved as a FITS format file. Two header files (.h), five source files (.cpp), and a resource file (.rc) were built to create the executable file ser_to_fits_csv.exe.
DOI: 10.6084/m9.figshare.19654665
title: Additional file 5 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 5. Addtitional_tool_files1: Source files of “ser_reduction.” This tool was used to subtract the dark frames from the SER format videos. Two header files (.h), four source files (.cpp), and a resource file (.rc) were built to create the executable file ser_reduction.exe by Visual Studio 2017 for × 86(32bit) Windows personal computers (The same applies hereafter). The comments in the source files are written in Japanese (The same applies hereafter).
DOI: 10.6084/m9.figshare.19654671
title: Additional file 7 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 7. Addtitional_tool_files3: Source files of “ser_average_adjust.” This tool was used to average frames in an SER format video to obtain a lunar background image, which was subtracted from an image of a flash. This tool allows us to average frames while shifting images to best match with a reference frame. Two header files (.h), six source files (.cpp), and a resource file (.rc) were built to create the executable file ser_average_adjust.exe.
DOI: 10.6084/m9.figshare.19654671.v1
title: Additional file 7 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 7. Addtitional_tool_files3: Source files of “ser_average_adjust.” This tool was used to average frames in an SER format video to obtain a lunar background image, which was subtracted from an image of a flash. This tool allows us to average frames while shifting images to best match with a reference frame. Two header files (.h), six source files (.cpp), and a resource file (.rc) were built to create the executable file ser_average_adjust.exe.
DOI: 10.6084/m9.figshare.19654674
title: Additional file 8 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 8. Addtitional_tool_files4: Source files of “ser_average_select.” This tool was used to average frames in an SER format video to obtain an averaged stellar image. This tool allows us to select frames of good quality manually. In addition, this tool allows us to shift images in the averaging process. Two header files (.h), six source files (.cpp), and a resource file (.rc) were built to create the executable file ser_average_select.exe.
DOI: 10.6084/m9.figshare.19654674.v1
title: Additional file 8 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 8. Addtitional_tool_files4: Source files of “ser_average_select.” This tool was used to average frames in an SER format video to obtain an averaged stellar image. This tool allows us to select frames of good quality manually. In addition, this tool allows us to shift images in the averaging process. Two header files (.h), six source files (.cpp), and a resource file (.rc) were built to create the executable file ser_average_select.exe.
DOI: 10.6084/m9.figshare.19654677
title: Additional file 9 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 9. The spectra of Flash170201 were calculated using these EXCEL files. (1) Flash170201.xlsx: An EXCEL file used to obtain the spectra. (2) TYC4665-715-1.xlsx: An EXCEL file used to obtain the count profile of the comparison star, TYC4665-715-1. We pasted the count profile to a sheet in Flash170201.xlsx. (3) alpha-And_No5.xlsx, alpha-And_No6.xlsx: Two EXCEL files to obtain the count profiles of α And at different positions in the video frames. We used the count profiles in the spectral flat-field correction (see section "Spectral flat-field correction"). We pasted the count profiles to a sheet in Flash170201.xlsx.
DOI: 10.6084/m9.figshare.19654677.v1
title: Additional file 9 of A low-dispersion spectral video camera for observing lunar impact flashes

description: Additional file 9. The spectra of Flash170201 were calculated using these EXCEL files. (1) Flash170201.xlsx: An EXCEL file used to obtain the spectra. (2) TYC4665-715-1.xlsx: An EXCEL file used to obtain the count profile of the comparison star, TYC4665-715-1. We pasted the count profile to a sheet in Flash170201.xlsx. (3) alpha-And_No5.xlsx, alpha-And_No6.xlsx: Two EXCEL files to obtain the count profiles of α And at different positions in the video frames. We used the count profiles in the spectral flat-field correction (see section "Spectral flat-field correction"). We pasted the count profiles to a sheet in Flash170201.xlsx.
DOI: 10.6084/m9.figshare.19654728.v1
title: Additional file 2 of Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state

description: Additional file 2 Tables S1 Summary results for 1,000 tests simulating different ploidies and different levels of coverage; Table S2 SRA information and values calculated for downsampled data of Bremia lactucae isolates used to validate the variance of allele balance approach; Table S3 SRA information and values calculated for Phytophthora infestans isolates used in this study; Table S4 SRA information and values calculated for downsampled Saccharomyces cerevisiae isolates used in this study; Table S5 SRA information and values calculated for Arabidopsis arenosa individuals used in this study; Table S6 Variance of allele balance values calculated for European race type isolates of Bremia lactucae in this study; and Table S7 Number of mutations introduced into each synthetic haplotype. Lower numbers are a subset of the larger preceding number. Each table is on a separate tab of the excel workbook (XLSX 35 kb).
DOI: 10.6084/m9.figshare.19654728
title: Additional file 2 of Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state

description: Additional file 2 Tables S1 Summary results for 1,000 tests simulating different ploidies and different levels of coverage; Table S2 SRA information and values calculated for downsampled data of Bremia lactucae isolates used to validate the variance of allele balance approach; Table S3 SRA information and values calculated for Phytophthora infestans isolates used in this study; Table S4 SRA information and values calculated for downsampled Saccharomyces cerevisiae isolates used in this study; Table S5 SRA information and values calculated for Arabidopsis arenosa individuals used in this study; Table S6 Variance of allele balance values calculated for European race type isolates of Bremia lactucae in this study; and Table S7 Number of mutations introduced into each synthetic haplotype. Lower numbers are a subset of the larger preceding number. Each table is on a separate tab of the excel workbook (XLSX 35 kb).
DOI: 10.6084/m9.figshare.19654726
title: Additional file 3 of Engineered Cas12a-Plus nuclease enables gene editing with enhanced activity and specificity

description: Additional file 3. The supporting data values for the figures, including Figs. 1e, f, 2c, e, f, 3d, e, 4b, e, 5b, 6e, f, 7d, e, g, h, and Figs. S1c, S4b, c, S9, S10.