cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15235234
title: Sex-dimorphic effects of neuromelanin buildup in rodent nigral dopamine neurons: implications for sex-biased vulnerability in Parkinson's disease

description: Source data used to generate figures and Key Resource Table (KRT) related to the manuscript titled "Sex-dimorphic effects of neuromelanin buildup in rodent nigral dopamine neurons: implications for sex-biased vulnerability in Parkinson’s disease" (preprint version).
description: Neuromelanin (NM) is a dark pigment accumulating with age in human substantia nigra pars compacta (SNpc) dopamine (DA) neurons, conferring the dark look that inspired nigral area’s name. Despite NM has long been associated with Parkinson’s disease (PD), as melanized neurons favorably degenerate during disease development, NM functions within SNpc DA neurons are still mostly elusive. Here, by exploiting an NM-producing rat model generated by viral vector-induced expression of human Tyrosinase (hTyr), we inspected NM impact on nigral DA neurons’ survival and activity, on mitochondrial functionality of SNpc, and behaviors resembling non-motor and motor PD symptoms.

Our data reveal sex dimorphism in NM effects on nigrostriatal dopamine circuit, with sex-biased alterations in neuronal firing activity and underlying intrinsic currents, nigral mitochondrial functions, and non-motor PD symptoms (anxiety). In conclusion, this study discloses unrealized NM effects within nigral DA neurons, advancing our comprehension of sex-specific features shaping sex-biased vulnerability to PD.
DOI: 10.5281/zenodo.15528775
title: Sex-dimorphic effects of neuromelanin buildup in rodent nigral dopamine neurons: implications for sex-biased vulnerability in Parkinson's disease

description: Source data used to generate figures and Key Resource Table (KRT) related to the manuscript titled "Sex-dimorphic effects of neuromelanin buildup in rodent nigral dopamine neurons: implications for sex-biased vulnerability in Parkinson’s disease" (preprint version).
description: Neuromelanin (NM) is a dark pigment accumulating with age in human substantia nigra pars compacta (SNpc) dopamine (DA) neurons, conferring the dark look that inspired nigral area’s name. Despite NM has long been associated with Parkinson’s disease (PD), as melanized neurons favorably degenerate during disease development, NM functions within SNpc DA neurons are still mostly elusive. Here, by exploiting an NM-producing rat model generated by viral vector-induced expression of human Tyrosinase (hTyr), we inspected NM impact on nigral DA neurons’ survival and activity, on mitochondrial functionality of SNpc, and behaviors resembling non-motor and motor PD symptoms.

Our data reveal sex dimorphism in NM effects on nigrostriatal dopamine circuit, with sex-biased alterations in neuronal firing activity and underlying intrinsic currents, nigral mitochondrial functions, and non-motor PD symptoms (anxiety). In conclusion, this study discloses unrealized NM effects within nigral DA neurons, advancing our comprehension of sex-specific features shaping sex-biased vulnerability to PD.
DOI: 10.15468/dl.wmbz5a
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is General Herbarium – Cryptogamy & Phanerogamy (CJBG-G) of Conservatoire et Jardin botaniques de Genève",
 "Country is Croatia"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003960-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15478359
title: MD Simulation of DD-Transpeptidase (PBP) protein of P. aeruginosa (with mutations recorded in 2018) and Mezlocillin (MEZ) ligand molecule

description: A mutated sequence of DD-transpeptidase/PBP2 protein (recorded in 2018) associated with P. aeruginosa is modeled and docked with a molecule of Mezlocillin. The data from subsequent Molecular Dynamics simulation is presented.

 

The data from the Molecular Modelling and Docking Simulations can be found here:

Roy, A. (2025). Docking of several proteins associated with strains of Pseudomonas aeruginosa with various antibiotic molecules [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15383904
DOI: 10.15468/dl.26tgjd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Deuteromycetes externi",
 "Country is Croatia"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003959-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyq4ka
title: Occurrence Download

description: A dataset containing 1878 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Liatris cylindracea)"
 ]
}

 The dataset includes 1878 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025840-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.br4rdk
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Otidiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((10 60,20 60,20 70,10 70,10 60))"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025836-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy5yex
title: Occurrence Download

description: A dataset containing 768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Forestiera segregata)",
 "StateProvince is one of (Bahamas, Bermuda, Cayman Is., Cuba, Dominican Republic, Florida, Georgia, Haiti, Jamaica, Leeward Is., Puerto Rico, South Carolina, Turks-Caicos Is.)",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 768 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025839-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc4g2z
title: Occurrence Download

description: A dataset containing 8945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tachystola acroxantha",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8945 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025838-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc48lml
title: CCDC 127429: Experimental Crystal Structure Determination

description: Related Article: D.Ranganathan, S.Kurur, I.L.Karle|2000|Biopolymers|54|249|doi:10.1002/1097-0282(20001005)54:4<249::AID-BIP20>3.0.CO;2-N
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30171541
title: A field cricket’s solutions to the cocktail party problem in conspecific choruses

description: Many animals signal in choruses to attract mates and reduce predation risk, but simultaneous signaling creates acoustic masking which impairs signal detection and recognition, akin to the cocktail party problem. The severity of interference is likely to be higher in conspecific choruses due to higher signal similarity between signalers, ruling out acoustic niche partitioning as seen in heterospecific choruses. In this study, we examined conspecific masking avoidance in conspecific choruses of a field cricket, Acanthogryllus asiaticus. Field-based measurements revealed that males call from choruses of up to 19 males, with the average nearest neighbor distance between males being 3 m. Transmission experiments showed that the calls of the males transmit up to 3 m and a focal male was likely to have two maskers on average, of which one would fall within the hearing distance of the focal male. In absence of any masking avoidance strategies, the average active space overlap, calculated across ten natural choruses, was found to be 40% and as high as 98%. However, field measurements suggested that focal males actively adjusted call timings to alternate with the audible masker. This was subsequently confirmed in controlled lab playback experiments. Thus, male spacing, limited sound transmission along the ground, and precise adjustment of call timings together reduced average acoustic overlap between maskers to &lt; 20% even in loud conspecific choruses. This study highlights how solutions to common problems, such as acoustic masking, vary starkly and behavioral adjustments become crucial when acoustic niche partitioning is ruled out.
DOI: 10.6084/m9.figshare.30171541.v2
title: A field cricket’s solutions to the cocktail party problem in conspecific choruses

description: Many animals signal in choruses to attract mates and reduce predation risk, but simultaneous signaling creates acoustic masking which impairs signal detection and recognition, akin to the cocktail party problem. The severity of interference is likely to be higher in conspecific choruses due to higher signal similarity between signalers, ruling out acoustic niche partitioning as seen in heterospecific choruses. In this study, we examined conspecific masking avoidance in conspecific choruses of a field cricket, Acanthogryllus asiaticus. Field-based measurements revealed that males call from choruses of up to 19 males, with the average nearest neighbor distance between males being 3 m. Transmission experiments showed that the calls of the males transmit up to 3 m and a focal male was likely to have two maskers on average, of which one would fall within the hearing distance of the focal male. In absence of any masking avoidance strategies, the average active space overlap, calculated across ten natural choruses, was found to be 40% and as high as 98%. However, field measurements suggested that focal males actively adjusted call timings to alternate with the audible masker. This was subsequently confirmed in controlled lab playback experiments. Thus, male spacing, limited sound transmission along the ground, and precise adjustment of call timings together reduced average acoustic overlap between maskers to &lt; 20% even in loud conspecific choruses. This study highlights how solutions to common problems, such as acoustic masking, vary starkly and behavioral adjustments become crucial when acoustic niche partitioning is ruled out.
DOI: 10.5517/cc48llk
title: CCDC 127428: Experimental Crystal Structure Determination

description: Related Article: D.Ranganathan, S.Kurur, I.L.Karle|2000|Biopolymers|54|249|doi:10.1002/1097-0282(20001005)54:4<249::AID-BIP20>3.0.CO;2-N
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4rm0h
title: CCDC 141856: Experimental Crystal Structure Determination

description: Related Article: D.Ranganathan, S.Kurur, I.L.Karle|2000|Biopolymers|54|249|doi:10.1002/1097-0282(20001005)54:4<249::AID-BIP20>3.0.CO;2-N
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30171541.v1
title: A field cricket’s solutions to the cocktail party problem in conspecific choruses

description: Many animals signal in choruses to attract mates and reduce predation risk, but simultaneous signaling creates acoustic masking which impairs signal detection and recognition, akin to the cocktail party problem. The severity of interference is likely to be higher in conspecific choruses due to higher signal similarity between signalers, ruling out acoustic niche partitioning as seen in heterospecific choruses. In this study, we examined conspecific masking avoidance in conspecific choruses of a field cricket, Acanthogryllus asiaticus. Field-based measurements revealed that males call from choruses of up to 19 males, with the average nearest neighbor distance between males being 3 m. Transmission experiments showed that the calls of the males transmit up to 3 m and a focal male was likely to have two maskers on average, of which one would fall within the hearing distance of the focal male. In absence of any masking avoidance strategies, the average active space overlap, calculated across ten natural choruses, was found to be 40% and as high as 98%. However, field measurements suggested that focal males actively adjusted call timings to alternate with the audible masker. This was subsequently confirmed in controlled lab playback experiments. Thus, male spacing, limited sound transmission along the ground, and precise adjustment of call timings together reduced average acoustic overlap between maskers to &lt; 20% even in loud conspecific choruses. This study highlights how solutions to common problems, such as acoustic masking, vary starkly and behavioral adjustments become crucial when acoustic niche partitioning is ruled out.
DOI: 10.5517/cc48lnm
title: CCDC 127430: Experimental Crystal Structure Determination

description: Related Article: D.Ranganathan, S.Kurur, R.Gilardi, I.L.Karle|2000|Biopolymers|54|289|doi:10.1002/1097-0282(20001005)54:4<289::AID-BIP60>3.0.CO;2-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4rm1j
title: CCDC 141857: Experimental Crystal Structure Determination

description: Related Article: D.Ranganathan, S.Kurur, I.L.Karle|2000|Biopolymers|54|249|doi:10.1002/1097-0282(20001005)54:4<249::AID-BIP20>3.0.CO;2-N
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3n4mh
title: CCDC 108736: Experimental Crystal Structure Determination

description: Related Article: A.Borgerding, J.Bracker, C.-S.Dreier, J.Kopf, R.Kramolowsky|1998|Phosphorus,Sulfur,Silicon,Relat.Elem.|132|207|doi:10.1080/10426509808036987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3thx9
title: CCDC 113891: Experimental Crystal Structure Determination

description: Related Article: P.Svancarek, P.Schwendt, J.Tatiersky, I.Smatanova, J.Marek|2000|Monatsh.Chem.|131|145|doi:10.1007/PL00010301
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3mwzk
title: CCDC 108499: Experimental Crystal Structure Determination

description: Related Article: S.Friederichs, T.Link, G.Klar|1995|Phosphorus,Sulfur,Silicon,Relat.Elem.|107|279|doi:10.1080/10426509508027944
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3kdmn
title: CCDC 106101: Experimental Crystal Structure Determination

description: Related Article: H.Dehne, P.Chume, H.Reinke|1996|J.Prakt.Chem.-Chem.-Zeitung|338|420|doi:10.1002/prac.19963380182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3kdnp
title: CCDC 106102: Experimental Crystal Structure Determination

description: Related Article: H.Dehne, P.Chume, H.Reinke|1996|J.Prakt.Chem.-Chem.-Zeitung|338|420|doi:10.1002/prac.19963380182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3kdpq
title: CCDC 106103: Experimental Crystal Structure Determination

description: Related Article: H.Dehne, P.Chume, H.Reinke|1996|J.Prakt.Chem.-Chem.-Zeitung|338|420|doi:10.1002/prac.19963380182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3snr8
title: CCDC 113080: Experimental Crystal Structure Determination

description: Related Article: G.F.Pauli, R.Frohlich|2000|Phytochem.Anal.|11|79|doi:10.1002/(SICI)1099-1565(200003/04)11:2<79::AID-PCA492>3.0.CO;2-H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4t0hf
title: CCDC 143204: Experimental Crystal Structure Determination

description: Related Article: I.L.Karle, J.L.Flippen-Anderson, K.Uma, H.Balaram, P.Balaram|1989|Proc.Nat.Acad.Sci.USA|86|765|doi:10.1073/pnas.86.3.765
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4t0jg
title: CCDC 143205: Experimental Crystal Structure Determination

description: Related Article: I.L.Karle, J.L.Flippen-Anderson, K.Uma, P.Balaram|1989|Biochemistry|28|6696|doi:10.1021/bi00442a024
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4mjdn
title: CCDC 137931: Experimental Crystal Structure Determination

description: Related Article: M.G.Andreu, K.Peseke, H.Reinke, J.Q.Suarez, M.Michalik|2000|J.Prakt.Chem.-Chem.-Zeitung|342|389|doi:10.1002/(SICI)1521-3897(200004)342:4<389::AID-PRAC389>3.3.CO;2-E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4mjfp
title: CCDC 137932: Experimental Crystal Structure Determination

description: Related Article: M.G.Andreu, K.Peseke, H.Reinke, J.Q.Suarez, M.Michalik|2000|J.Prakt.Chem.-Chem.-Zeitung|342|389|doi:10.1002/(SICI)1521-3897(200004)342:4<389::AID-PRAC389>3.3.CO;2-E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3lz0n
title: CCDC 107601: Experimental Crystal Structure Determination

description: Related Article: R.Jautelat, E.Winterfeldt, A.Muller-Fahrnow|1996|J.Prakt.Chem.-Chem.-Zeitung|338|695|doi:10.1002/prac.199633801137
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3sxc4
title: CCDC 113316: Experimental Crystal Structure Determination

description: Related Article: R.Anulewicz, I.Wawer, B.Piekarska-Bartoszewicz, A.Temeriusz|1997|J.Carbohydr.Chem.|16|739|doi:10.1080/07328309708006538
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.