cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/a945f294d03143d8b5197e65f8005915
title: SG-WEx: Unified Model output for June-July 2015 over South Georgia, without island orography (run: u-af015)

description: This dataset contains modelling output from the u-af015 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period June-July 2015 with a flat orography file for the island. See related dataset for output from a complementary run with the island's orography included for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.25375/uct.14561673
title: Direct and indirect effects of high temperatures on fledging success in a cooperatively breeding bird.

description: High temperatures and low rainfall consistently constrain reproduction in arid-zone bird species. Understanding the mechanisms underlying this pattern is critical for predicting how climate change will influence population persistence and to inform conservation and management. In this study, we analysed Southern Pied Babbler <i>Turdoides</i> nestling survival, daily growth rate and adult investment behaviour during the nestling period over three austral summer breeding seasons. High temperatures were associated with lower body mass, shorter tarsi, and reduced daily growth rates of nestlings. Piecewise structural equation modelling suggests that direct impacts of temperature have the strongest influence on nestling size and daily growth rates for 5-day-old and 11-day-old nestlings, followed by temperature-related adjustments to provisioning rates by adults to older nestlings. Rainfall and group size influenced the behaviour of provisioning adults but not nestling size, daily growth rates or survival to fledging. Adjustments to adult provisioning strategies did not compensate for direct negative effects of high air temperatures on nestling body mass, tarsus and wing length, or daily growth rates. Detailed mechanistic data like these allow us to model the pathways by which high temperature causes nest failure. In turn, this could allow us to design targeted conservation action to effectively mitigate climate effects.<br>
DOI: 10.25375/uct.14561673.v1
title: Direct and indirect effects of high temperatures on fledging success in a cooperatively breeding bird.

description: High temperatures and low rainfall consistently constrain reproduction in arid-zone bird species. Understanding the mechanisms underlying this pattern is critical for predicting how climate change will influence population persistence and to inform conservation and management. In this study, we analysed Southern Pied Babbler <i>Turdoides</i> nestling survival, daily growth rate and adult investment behaviour during the nestling period over three austral summer breeding seasons. High temperatures were associated with lower body mass, shorter tarsi, and reduced daily growth rates of nestlings. Piecewise structural equation modelling suggests that direct impacts of temperature have the strongest influence on nestling size and daily growth rates for 5-day-old and 11-day-old nestlings, followed by temperature-related adjustments to provisioning rates by adults to older nestlings. Rainfall and group size influenced the behaviour of provisioning adults but not nestling size, daily growth rates or survival to fledging. Adjustments to adult provisioning strategies did not compensate for direct negative effects of high air temperatures on nestling body mass, tarsus and wing length, or daily growth rates. Detailed mechanistic data like these allow us to model the pathways by which high temperature causes nest failure. In turn, this could allow us to design targeted conservation action to effectively mitigate climate effects.<br>
DOI: 10.5281/zenodo.4750187
title: CsoDIAq Software for Direct Infusion Shotgun Proteome Analysis (DISPA) - Data Upload

description: Data upload for CsoDIAq Software for Direct Infusion Shotgun Proteome Analysis (DISPA) preprint.
DOI: 10.5281/zenodo.4750186
title: CsoDIAq Software for Direct Infusion Shotgun Proteome Analysis (DISPA) - Data Upload

description: Data upload for CsoDIAq Software for Direct Infusion Shotgun Proteome Analysis (DISPA) preprint.
DOI: 10.25375/uct.12780803
title: Parental morph combination does not influence innate immune function in nestlings of a colour-polymorphic African raptor: Data

description: Conditions experienced during early life can have long-term individual consequences by influencing dispersal, survival, recruitment and productivity. Resource allocation during development can have strong carry-over effects onto these key parameters and is directly determined by the quality of parental care. In the black sparrowhawk (Accipiter melanoleucus), a colour-polymorphic raptor, parental morphs influence nestling somatic growth and survival, with pairs consisting of different colour morphs ('mixed-morph pairs') producing offspring with lower body mass indices, but higher apparent survival rates. Resource allocation theory could explain this relationship, with nestlings of mixed-morph pairs trading off a better innate immune system against somatic growth. We quantified several innate immune parameters of nestlings (hemagglutination, hemolysis, bacteria-killing capacity and haptoglobin concentration) and triggered an immune response by injecting lipopolysaccharides. Although we found that nestlings with lower body mass index had higher local survival rates, we found no support for the proposed hypothesis: neither baseline immune function nor the mounted immune response of nestlings was associated with parental morph combination. Our results suggest that these immune parameters are unlikely involved in providing a selective advantage for the different colour morphs' offspring, and thus innate immunity does not appear to be traded off against a great allocation of resources to somatic growth. Alternative hypotheses explaining the mechanism of a low nestling body mass index leading to subsequent higher local survival could be related to the post-fledgling dependency period or differences in dispersal patterns for the offspring from different morph combinations.<br>
DOI: 10.25375/uct.12780803.v1
title: Parental morph combination does not influence innate immune function in nestlings of a colour-polymorphic African raptor: Data

description: Conditions experienced during early life can have long-term individual consequences by influencing dispersal, survival, recruitment and productivity. Resource allocation during development can have strong carry-over effects onto these key parameters and is directly determined by the quality of parental care. In the black sparrowhawk (Accipiter melanoleucus), a colour-polymorphic raptor, parental morphs influence nestling somatic growth and survival, with pairs consisting of different colour morphs ('mixed-morph pairs') producing offspring with lower body mass indices, but higher apparent survival rates. Resource allocation theory could explain this relationship, with nestlings of mixed-morph pairs trading off a better innate immune system against somatic growth. We quantified several innate immune parameters of nestlings (hemagglutination, hemolysis, bacteria-killing capacity and haptoglobin concentration) and triggered an immune response by injecting lipopolysaccharides. Although we found that nestlings with lower body mass index had higher local survival rates, we found no support for the proposed hypothesis: neither baseline immune function nor the mounted immune response of nestlings was associated with parental morph combination. Our results suggest that these immune parameters are unlikely involved in providing a selective advantage for the different colour morphs' offspring, and thus innate immunity does not appear to be traded off against a great allocation of resources to somatic growth. Alternative hypotheses explaining the mechanism of a low nestling body mass index leading to subsequent higher local survival could be related to the post-fledgling dependency period or differences in dispersal patterns for the offspring from different morph combinations.<br>
DOI: 10.5281/zenodo.4751628
title: Opportunities and constraints in the restoration of riparian ecosystems invaded by alien trees: insights from the Western Cape, South Africa

description: Invasive alien species are widely considered to be the second most significant threat to biodiversity globally following direct habitat destruction. The invasion of riparian systems worldwide by alien plants has contributed to profound changes in biodiversity and ecosystem functioning. In South Africa, river banks and river beds are amongst the most severely invaded landscapes, with the most damaging invaders, especially in the Fynbos Biome, being trees and shrubs of the Australian genera Acacia and Eucalyptus. Although large-scale management operations are underway to clear invasive trees and restore ecosystems, little is known regarding opportunities and constraints of native species recovery after alien clearing. The core aim of this thesis is to consider whether key aspects of two widely cited restoration models (successional and alternative-state models) are useful for guiding effective management of severely-invaded riparian vegetation. As a study system, I used the Berg River in the Western Cape, South Africa which is severely impacted by invasive trees, especially Eucalyptus camaldulensis. By linking the studies of constraints for restoration and opportunities for native species recovery, the aim was to provide new possibilities for restoration in riparian zones.
description: For PhD thesis purpose
DOI: 10.5281/zenodo.4751627
title: Opportunities and constraints in the restoration of riparian ecosystems invaded by alien trees: insights from the Western Cape, South Africa

description: Invasive alien species are widely considered to be the second most significant threat to biodiversity globally following direct habitat destruction. The invasion of riparian systems worldwide by alien plants has contributed to profound changes in biodiversity and ecosystem functioning. In South Africa, river banks and river beds are amongst the most severely invaded landscapes, with the most damaging invaders, especially in the Fynbos Biome, being trees and shrubs of the Australian genera Acacia and Eucalyptus. Although large-scale management operations are underway to clear invasive trees and restore ecosystems, little is known regarding opportunities and constraints of native species recovery after alien clearing. The core aim of this thesis is to consider whether key aspects of two widely cited restoration models (successional and alternative-state models) are useful for guiding effective management of severely-invaded riparian vegetation. As a study system, I used the Berg River in the Western Cape, South Africa which is severely impacted by invasive trees, especially Eucalyptus camaldulensis. By linking the studies of constraints for restoration and opportunities for native species recovery, the aim was to provide new possibilities for restoration in riparian zones.
description: For PhD thesis purpose
DOI: 10.15468/73u7m9
title: Cybaeus (Araneae: Cybaeidae): the consocius species group of the Californian clade

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bennett, Robb, Copley, Claudia, Copley, Darren (2021): Cybaeus (Araneae: Cybaeidae): the consocius species group of the Californian clade. Zootaxa 4965 (3): 401-436, DOI: https://doi.org/10.11646/zootaxa.4965.3.1
DOI: 10.13149/x2bb-cp61
title: Elementkonzentrationsdaten Keramik aus der Siedlung Taganrog, Produktionsortbestimmung von Keramk

description: Elementkonzentrationsdaten zur Herkunftsbestimmung archäologischer Keramk aus der Siedlung Taganrog. Elementkonzentationen von bis zu 30 Haupt-, Neben- und Spurenelementen von verschiedenen Zeitperioden und verschiedene Ausgrabungsstätten.
DOI: 10.6084/m9.figshare.14402072.v1
title: Supplemental Table 2.docx

description: <b>Data from: </b><b>Maternal Testosterone Concentrations in Third Trimester and Offspring Handgrip Strength at 5 Years: Odense Child Cohort</b>
DOI: 10.6084/m9.figshare.14402066.v1
title: Supplemental Table 1.docx

description: <b>Data from: </b><b>Maternal Testosterone Concentrations in Third Trimester and Offspring Handgrip Strength at 5 Years: Odense Child Cohort</b>
DOI: 10.6084/m9.figshare.14402072
title: Supplemental Table 2.docx

description: <b>Data from: </b><b>Maternal Testosterone Concentrations in Third Trimester and Offspring Handgrip Strength at 5 Years: Odense Child Cohort</b>
DOI: 10.6084/m9.figshare.14402066
title: Supplemental Table 1.docx

description: <b>Data from: </b><b>Maternal Testosterone Concentrations in Third Trimester and Offspring Handgrip Strength at 5 Years: Odense Child Cohort</b>
DOI: 10.5066/p9ujah16
title: Data describing vulnerability of Pacific salmon to invasion of northern pike (Esox lucius) in southcentral Alaska, 2017-2019

description: The shapefile contains the data necessary to recreate the analyses used in Jalbert et al., in review, Vulnerability of Pacific salmon to invasion of northern pike (Esox lucius) in southcentral Alaska. Specifically, users will be able to view 1) intrinsic potential model calculations for 5 Pacific salmonids (Chinook, chum, pink, sockeye, and coho salmon) and northern pike and 2) all parent nodes of the vulnerability model (human colonization, natural colonization, and habitat overlap) as well as their inputs. Finally, users are able to map vulnerability to invasion for each Pacific salmon species.
DOI: 10.15468/ddfap9
title: World Biodiversity Database (Euphausiacea)

description: ETI is a non-governmental organization in operational relation with UNESCO, dedicated to improving on a global scale the quantity, quality and accessibility of taxonomic information. The ‘Euphausiids of the World Ocean’ database covers all 86 species of the order Euphausiacea (krill) in the oceans, and was produced at the Scripps Institution of Oceanography. It is part of ETI’s World Biodiversity Database. The full database is published on CD-ROM (ISBN 3-540-14673-3), and includes a fully illustrated multiple-entry key, a picture key, interactive distribution maps, and a special database treating larval development for most species.
DOI: 10.15468/rp6ex3
title: Computer Aided Identification of Phlebotomine sandflies of Americas

description: CIPA includes information on 418 neotropical sandfly (Phlebotominae) species. These blood-sucking insects are important as vectors transmitting human and animal diseases, e.g. leishmaniasis, bartonellosis, arboviruses. In addition to the data contributed to the Catalogue of Life, CIPA also provides an interactive key and data on the ecology and epidemiology of the group. CIPA is an international project involving experts from 9 countries and was supported by the Program for Science & Technology Cooperation, Office of the Science Advisor, USA; Agency for International Development, and the Scientific & Technical Cooperation, Ministry of Foreign Affairs, France.
DOI: 10.25345/c5d24f
title: MassIVE MSV000087408 - RajKumar-PolZeta-P19-078_MayoClinic
title: Silver stained bands were submitted for mass spec analysis. Investigators are interested in the protein polzeta.
DOI: 10.5281/zenodo.4749294
title: EpiTALE example data

description: Example data for testing the functionality of the EpiTALE suite for TALE target prediction considering epigenetic information.
DOI: 10.5281/zenodo.4749293
title: EpiTALE example data

description: Example data for testing the functionality of the EpiTALE suite for TALE target prediction considering epigenetic information.
DOI: 10.21227/bgmm-t264
title: Multi-script handwritten signature (Roman Devanagari)

description: An offline handwritten signature dataset from two most popular scripts in India namely Roman and Devanagari is proposed here.
DOI: 10.15468/p7y8yr
title: Brassicaceae species checklist and database

description: A species checklist has been prepared for the Brassicaceae (Cruciferae) family, providing the first updated list in over 70 years. The current taxonomic database contains approximately 14,000 plant names, compiled from the taxonomic literature starting with Linnaeus’s Species plantarum in 1753 to the present. Taxon status and synonymy, taxon name, scientific authority, literature source and source verification, and the basionym are provided for each record.
DOI: 10.15468/5aksqs
title: Brachiopoda Database

description: Brachiopoda Database is a taxonomic database of recent lamp-shells and higher taxon names, including some fossil taxa. Diagnoses, references, distribution maps of the species and genus are being added gradually and updated . Databases are closely related to the web portal http://paleopolis.rediris.es/BrachNet/. Data are contributed to the Catalogue of Life via the paleopolis.rediris web portal.
DOI: 10.5517/ccdc.csd.ccz10qq
title: CCDC 894713: Experimental Crystal Structure Determination

description: Related Article: A. Subashini, V. Veeramani, K. Thamaraiselvi, Aurelien Crochet, Priya Rose, Reji Philip, R. Ramesh Babu, K. Ramamurthi|2021|Opt.Mater.|117|111081|doi:10.1016/j.optmat.2021.111081
description: Related Article: A. Subashini, A. Crochet, K. M. Fromm, K. Ramamurthi|2019|CSD Communication|||
DOI: 10.6084/m9.figshare.14579439
title: 3D_printing_microscopy_database.xlsx

description: A database of microscopy-related projects that use 3D printing
DOI: 10.6084/m9.figshare.14579439.v1
title: 3D_printing_microscopy_database.xlsx

description: A database of microscopy-related projects that use 3D printing
DOI: 10.5517/ccdc.csd.cc260ck5
title: CCDC 2026146: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cl6
title: CCDC 2026147: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cm7
title: CCDC 2026148: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cn8
title: CCDC 2026149: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cp9
title: CCDC 2026150: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cqb
title: CCDC 2026151: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260crc
title: CCDC 2026152: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260csd
title: CCDC 2026153: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260ctf
title: CCDC 2026154: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cvg
title: CCDC 2026155: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cwh
title: CCDC 2026156: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc260cxj
title: CCDC 2026157: Experimental Crystal Structure Determination

description: Related Article: Johannes Karges, Mark Kalaj, Milan Gembicky, Seth M. Cohen|2021|Angew.Chem.,Int.Ed.|60|10716|doi:10.1002/anie.202016768
DOI: 10.5517/ccdc.csd.cc2698rk
title: CCDC 2034708: Experimental Crystal Structure Determination

description: Related Article: D.U. Dan-Dan, R.E.N. Ning, Z.H.A.N.G. Jian-Jun|2021|J.Solid State Chem.|300|122198|doi:10.1016/j.jssc.2021.122198
DOI: 10.5517/ccdc.csd.cc2698sl
title: CCDC 2034709: Experimental Crystal Structure Determination

description: Related Article: D.U. Dan-Dan, R.E.N. Ning, Z.H.A.N.G. Jian-Jun|2021|J.Solid State Chem.|300|122198|doi:10.1016/j.jssc.2021.122198
DOI: 10.5517/ccdc.csd.cc2698vn
title: CCDC 2034711: Experimental Crystal Structure Determination

description: Related Article: D.U. Dan-Dan, R.E.N. Ning, Z.H.A.N.G. Jian-Jun|2021|J.Solid State Chem.|300|122198|doi:10.1016/j.jssc.2021.122198
DOI: 10.5517/ccdc.csd.cc2698wp
title: CCDC 2034712: Experimental Crystal Structure Determination

description: Related Article: D.U. Dan-Dan, R.E.N. Ning, Z.H.A.N.G. Jian-Jun|2021|J.Solid State Chem.|300|122198|doi:10.1016/j.jssc.2021.122198
DOI: 10.5281/zenodo.4751879
title: DAnIEL DB v1.1

description: Database for the web server DAnIEL: a user-friendly web server for fungal ITS amplicon sequencing data. This includes: DAnIEL interact: Manually curated table of fungal interactions based on abstracts from literature review. MeSH terms were used whenever applicable. DAnIEL clinical: Clinical samples of species involved in a suspicious fungal infection from the German National Reference Center for Invasive Fungal Infections (NRZMyk) Fungal projects in the NCBI SRA. Samples were sanity-checked for presence of ITS sequences.
DOI: 10.5281/zenodo.4073124
title: DAnIEL DB v1.1

description: Database for the web server DAnIEL: a user-friendly web server for fungal ITS amplicon sequencing data. This includes: DAnIEL interact: Manually curated table of fungal interactions based on abstracts from literature review. MeSH terms were used whenever applicable. DAnIEL clinical: Clinical samples of species involved in a suspicious fungal infection from the German National Reference Center for Invasive Fungal Infections (NRZMyk) Fungal projects in the NCBI SRA. Samples were sanity-checked for presence of ITS sequences.
DOI: 10.7284/120440
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-14-08 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition