cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ypa7tn
title: Occurrence Download

description: A dataset containing 19574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Lesotho",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 19574 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066624-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10149238
title: An in-situ daily dataset for benchmarking temporal variability of groundwater recharge

description: A newly developed benchmark dataset of groundwater recharge per unit specific yield (RpSy, n meters) at daily temporal resolution is presented. The data has been obtained through the application of the Water table Fluctuation (WTF) method at groundwater wells within the continental US. To ensure high-fidelity estimates, only wells that meet a set of stringent criteria have been considered. The RpSy dataset may serve as a benchmark for validating the temporal consistency of recharge products and daily simulation results from land surface and integrated hydrologic models.

The resulting product is a continuous daily RpSy (n meters) time series data for 485 groundwater wells. The data files are provided in the .csv format and consist of three columns for each observation well. The first column lists the local time, while the second and third columns provide the RpSy and RpSyu (considering a groundwater depth-dependent specific yield) time series in meters per day. Additionally, a file containing site information for all the selected wells is included. It contains four columns that detail the USGS ID of the groundwater well, its latitude (Lat), longitude (Long), and screen depth (depth, in meters). The data file can be accessed in most text editors and spreadsheets.
DOI: 10.15468/dl.jcztvq
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.879298 -32.465802, 148.879298 -32.47254, 148.874807 -32.47254, 148.874807 -32.481523, 148.879298 -32.481523, 148.879298 -32.477031, 148.881544 -32.477031, 148.881544 -32.481523, 148.88379 -32.481523, 148.88379 -32.465802, 148.879298 -32.465802))"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066626-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10674668
title: Guided wave tomography for thickness mapping

description: This dataset is for mapping thickness variation using non-dispersive guided waves through geometrical full waveform inversion.
DOI: 10.5281/zenodo.13323267
title: Guided wave tomography for thickness mapping

description: This dataset is for mapping thickness variation using non-dispersive guided waves through geometrical full waveform inversion.
DOI: 10.5281/zenodo.11634509
title: Molecular dynamics simulation data of the manuscript "KnowVolution of an efficient polyamidase through molecular dynamics simulations of incrementally docked oligomeric substrates"

description: This repository provides the simulation data as well as the input and parameters files to reproduce our findings.

Acknowledgments

The authors gratefully acknowledge the computing time provided by RWTH Aachen University. Computations were performed with computing resources granted by RWTH Aachen University under project rwth1584.
DOI: 10.5281/zenodo.11634510
title: Molecular dynamics simulation data of the manuscript "KnowVolution of an efficient polyamidase through molecular dynamics simulations of incrementally docked oligomeric substrates"

description: This repository provides the simulation data as well as the input and parameters files to reproduce our findings.

Acknowledgments

The authors gratefully acknowledge the computing time provided by RWTH Aachen University. Computations were performed with computing resources granted by RWTH Aachen University under project rwth1584.
DOI: 10.5281/zenodo.13323272
title: SERNAPESCA Chilean animals' carcasses record 2023
DOI: 10.5281/zenodo.13323271
title: SERNAPESCA Chilean animals' carcasses record 2023
DOI: 10.5281/zenodo.13323275
title: Supplementary Tables for Kim et al., 2024

description: Supplementary Table S1. Effects of different air–drying time points (h) of 5 serial concentrations of transfluthrin impregnated filter papers on 1 h knockdown, 24 h mortality, and 24 h mosquito recovery rate of pyrethroid–susceptible strain of Aedes aegypti (USDA) female mosquitoes using HITSS–TOX.

Supplementary Table S2. Comparison of 1 h knockdown, 24 h mortality and 24 h mosquito recovery rates of pyrethroid susceptible strain of Aedes aegypti (USDA) exposed to 5 serial concentrations of transfluthrin on filter papers at different air–drying time points (h) using HITSS–TOX.
DOI: 10.5281/zenodo.13323276
title: Supplementary Tables for Kim et al., 2024

description: Supplementary Table S1. Effects of different air–drying time points (h) of 5 serial concentrations of transfluthrin impregnated filter papers on 1 h knockdown, 24 h mortality, and 24 h mosquito recovery rate of pyrethroid–susceptible strain of Aedes aegypti (USDA) female mosquitoes using HITSS–TOX.

Supplementary Table S2. Comparison of 1 h knockdown, 24 h mortality and 24 h mosquito recovery rates of pyrethroid susceptible strain of Aedes aegypti (USDA) exposed to 5 serial concentrations of transfluthrin on filter papers at different air–drying time points (h) using HITSS–TOX.
DOI: 10.5281/zenodo.13323247
title: Aligned DNA sequence matrix for phylogenetic analyses in the article "A new glassfrog of the genus Nymphargus (Anura: Centrolenidae) from Cordillera del Cóndor, Ecuador"

description: Aligned DNA sequence matrix for phylogenetic analyses of the article "A new glassfrog of the genus Nymphargus (Anura: Centrolenidae) from Cordillera del Cóndor, Ecuador"

The matrix is in NEXUS format and has 6613 bp and 102 terminals.

Partitions are as follows:



charset 12S = 1-944;

charset 16S = 945-2093;

charset BNDFcodonPos1 =  2096-2792\3;

charset BNDFcodonPos2 =  2094-2793\3;

charset BNDFcodonPos3 =  2095-2791\3;

charset ND1codonPos1 =  2795-3749\3;

charset ND1codonPos2 =  2796-3750\3;

charset ND1codonPos3 =  2794-3751\3;

charset CXCR4codonPos1 =  3753-4107\3;

charset CXCR4codonPos2 =  3754-4105\3;

charset CXCR4codonPos3 =  3752-4106\3;

charset cmyccodonPos1 =  4108-4507\3;

charset cmyccodonPos2 =  4109-4508\3;

charset cmyccodonPos3 =  4110-4509\3;

charset POMCcodonPos1 =  4511-5120\3;

charset POMCcodonPos2 =  4512-5121\3;

charset POMCcodonPos3 =  4510-5122\3;

charset RAG1codonPos1 =  5123-5576\3;

charset RAG1codonPos2 =  5124-5577\3;

charset RAG1codonPos3 =  5125-5578\3;

charset SLC8A1codonPos1 =  5580-6120\3;

charset SLC8A1codonPos2 =  5581-6118\3;

charset SLC8A1codonPos3 =  5579-6119\3;

charset SLC8A3codonPos1 =  6122-6587\3;

charset SLC8A3codonPos2 =  6123-6585\3;

charset SLC8A3codonPos3 =  6121-6586\3;
DOI: 10.5281/zenodo.13315682
title: Automated Classification of Conversation Valence and Arousal using Autonomic Nervous System Responses

description: This repository contains the supplementary file for our study "Automated Classification of Conversation Valence and Arousal using Autonomic Nervous System Responses". The MS Excel file contains all physiological features (individual features and synchrony features) for all valid dyads and all intervals together with self-report ratings of the conversation (Self-Assessment Manikin) and personality trait data (CES-D, BFNES, QCAE). Synchrony features were calculated using code from a previous Zenodo submission (https://zenodo.org/record/7140829).
DOI: 10.5281/zenodo.13315683
title: Automated Classification of Conversation Valence and Arousal using Autonomic Nervous System Responses

description: This repository contains the supplementary file for our study "Automated Classification of Conversation Valence and Arousal using Autonomic Nervous System Responses". The MS Excel file contains all physiological features (individual features and synchrony features) for all valid dyads and all intervals together with self-report ratings of the conversation (Self-Assessment Manikin) and personality trait data (CES-D, BFNES, QCAE). Synchrony features were calculated using code from a previous Zenodo submission (https://zenodo.org/record/7140829).
DOI: 10.15468/dl.fq2t5c
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.700486 -36.885535, 143.700486 -36.896764, 143.69824 -36.896764, 143.69824 -36.89901, 143.711715 -36.89901, 143.711715 -36.896764, 143.707223 -36.896764, 143.707223 -36.892272, 143.711715 -36.892272, 143.711715 -36.890026, 143.720698 -36.890026, 143.720698 -36.885535, 143.700486 -36.885535)), ((143.700486 -36.885535, 143.700486 -36.883289, 143.69824 -36.883289, 143.69824 -36.885535, 143.700486 -36.885535)), ((143.720698 -36.890026, 143.720698 -36.892272, 143.71396 -36.892272, 143.71396 -36.896764, 143.722944 -36.896764, 143.722944 -36.890026, 143.720698 -36.890026)), ((143.722944 -36.890026, 143.727435 -36.890026, 143.727435 -36.878797, 143.722944 -36.878797, 143.722944 -36.890026)))"
 ]
}

 The dataset includes 29 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066627-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26600155.v1
title: Additional file 10 of Fam20c regulates the calpain proteolysis system through phosphorylating Calpasatatin to maintain cell homeostasis

description: Additional file 10. Table S4 127 overlapped up-regulated differentially expressed genes between ATAC-seq and RNA-seq.
DOI: 10.15468/dl.87fh6e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.966884 -32.47254, 148.966884 -32.477031, 148.971376 -32.477031, 148.971376 -32.47254, 148.966884 -32.47254))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066631-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26600305.v1
title: Additional file 6 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

description: Additional file 6: Table S2. Polycistronic read statistics for NOD mouse. This table shows the tally of non-overlapping paired-end reads that were assembled into contigs by MetaPro through rnaSPADes and subsequently annotated into discrete genes by MetaGeneMark. This table also shows the prevalence of polycistronic reads that exist within the data. BWA was used to align the assembled paired-end reads against the genes to identify discordant alignments between the forward and reverse-end read of a pair with the same ID.  This table has seven columns: 1) the sample ID. 2) the sample description. 3) the total number of alignments is the number of alignments of a read to a gene that BWA reported. 4) The total number of pairs is the number of IDs that BWA aligned, be it forward, reverse, or both paired-end reads.  5) The paired-end disagreements column are the number of times a forward-end and reverse-end read had different alignments for each NOD mouse sample.  6) The paired-end agreements column shows the number of times a forward-read and reverse-end read aligned to the same gene.  7)  The percentage of paired-end disagreements, relative to the total number of paired-end reads in the sample. The percentage of disagreements (polycistronic reads) are at-best 0.23%, and at-worst 7.8% of assembled, non-overlapped paired-end reads in the NOD mouse samples.
DOI: 10.15468/dl.h689mw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.762749 -36.892272, 144.762749 -36.896764, 144.778469 -36.896764, 144.778469 -36.892272, 144.762749 -36.892272))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066633-240626123714530/datasets/export for details.
DOI: 10.15468/dl.uzbway
title: Occurrence Download

description: A dataset containing 26153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cannabis L."
 ]
}

 The dataset includes 26153 records from 756 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066630-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26600308
title: Additional file 7 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

description: Additional file 7: Table S3.Read annotation statistics for NOD mouse datasets from MetaPro, HUMAnN3, HUMAnN2, SAMSA2 compared with the gold standard. This table shows the number of reads in each NOD mouse sample each pipeline assigned to the 8 ASF bacteria: Clostridium ASF356, Clostridium ASF502, Eubacterium plexicaudatum, Firimicutes ASF500, Lactobacillus ASF360, Lactobacillus murinus, Mucisprillim schaedleri, and Parabacteroides ASF519.  Due to the similarity between P. ASF519, and P. goldsteinii, the pipelines will sometimes annotate to P. goldsteinii rather than to P.ASF519.  P. goldsteinii was also a dominant species found within the samples outside of the 8 ASF bacteria.  The expected results were produced by annotating the reads with a reference containing only the 8 ASF, using BWA.
DOI: 10.6084/m9.figshare.26600317
title: Additional file 10 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

description: Additional file 10: Table S6.Comparisons of Enzyme annotations between MetaPro and SAMSA2 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against SAMSA2 on the NOD mouse, kimchi, and human oral biofilm datasets.  The SAMSA2 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting SAMSA2 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by SAMSA2. The same comparison is shown for MetaPro’s high-qaulity EC predictions.
DOI: 10.6084/m9.figshare.26600302
title: Additional file 5 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

description: Additional file 5: Table S1. Summary of Sequence Read Processing for Three Metatranscriptomic Datasets (NOD Mouse gut; Kimchi and Human Oral Biofilm) Processed by HUMAnN3, HUMAnN2, MetaPro and SAMSA2. This table reports the processing results from the four pipelines on samples from three different datasets. HUMAnN2 and HUMAnN3’s preprocessing tool concatenates paired reads into 1 single file and treats them as 2 separate reads. The NOD mouse samples are paired-end data, while the kimchi and human oral biofilm represent single-end sequence datasets. Unlike MetaPro and SAMSA2, HUMAnN3 and HUMAnN2 do not report transcripts but instead group proteins identified in their pipelines into gene families that are reported in the final column.
DOI: 10.6084/m9.figshare.26600320
title: Additional file 11 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

description: Additional file 11: Table S7.Comparisons of Enzyme annotations between MetaPro and HUMAnN2 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against HUMAnN2 on the NOD mouse, kimchi, and human oral biofilm datasets.  The HUMAnN2 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting HUMAnN2 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by HUMAnN2.  The same comparison is shown for MetaPro’s high-qaulity EC predictions.
DOI: 10.60859/cbxy-g768
title: NG00131
DOI: 10.15468/dl.jypl91
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-54.66796875 -25.662818840382027, -54.5855712890625 -25.578616908826945, -54.43176269531249 -25.628154644151646, -54.1790771484375 -25.509229629633147, -54.107666015625 -25.474520940004556, -53.865966796875 -25.638059727551774, -53.7945556640625 -25.969403730586507, -53.64074707031249 -26.235780163236996, -53.7451171875 -26.71764571012418, -53.624267578125 -26.894148758841908, -53.8604736328125 -27.21702164820418, -53.8714599609375 -27.27562578490755, -54.041748046875 -27.280508069246864, -54.15161132812499 -27.319558618340555, -54.25048828125 -27.44637791564996, -54.8052978515625 -27.611998736965205, -54.95361328125 -27.787089410815625, -55.0140380859375 -27.87452925947934, -55.3436279296875 -27.9910059987894, -55.579833984375 -28.189696075973487, -55.8489990234375 -27.995856470401698, -55.8599853515625 -27.80652657524706, -56.1126708984375 -27.431752343197733, -56.0467529296875 -27.309797269034537, -55.7720947265625 -27.402495384729303, -55.6292724609375 -27.300035060944992, -55.623779296875 -27.231675575854887, -55.6512451171875 -27.11439021554391, -55.5303955078125 -27.08015878820497, -55.469970703125 -27.011664562941757, -55.3216552734375 -26.943128570570703, -55.228271484375 -26.95292198104296, -55.1239013671875 -26.96271454039537, -55.162353515625 -26.850048762094815, -55.030517578125 -26.801028605513178, -54.66796875 -25.662818840382027))",
 "HasCoordinate is true",
 "TaxonKey is Orthoptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 286 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005132-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n79sjt
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección nacional de palmas de Colombia - JBQ"
 ]
}

 The dataset includes 327 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042733-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4bc6i
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urochloa ruziziensis (R.Germ. & C.M.Evrard) Crins"
 ]
}

 The dataset includes 113 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005133-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5g7yk
title: Occurrence Download

description: A dataset containing 47422 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NEFSC Right Whale Aerial Survey"
 ]
}

 The dataset includes 47422 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028621-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nx9fgw
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Polychaetes in surface sediments off Sylt collected during HEINCKE cruise HE236"
 ]
}

 The dataset includes 138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005133-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.634wcq
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandromoea grandis Ridl."
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160781-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugacdk
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Threskiornis melanocephalus (Latham, 1790)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 57 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005133-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9swsqg
title: Occurrence Download

description: A dataset containing 1200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de Helechos y grupos emparentados del Herbario LIL (FML-Tucumán)",
 "Country is Argentina"
 ]
}

 The dataset includes 1200 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160770-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uc1frd
title: Occurrence Download

description: A dataset containing 1480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betula utilis D.Don"
 ]
}

 The dataset includes 1480 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005133-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr9yp6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandromoea miqueliana C.B.Clarke"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160787-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znuckc
title: Occurrence Download

description: A dataset containing 457 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicrodon guttulatum Duméril & Bibron, 1839"
 ]
}

 The dataset includes 457 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005133-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.