cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10275935.v4
title: Carbon sequestration in artificial silicate soils facilitated by arbuscular mycorrhizal fungi and glomalin-related soil protein

description: Raw date and processing prodecures of them in the paper: Carbon sequestration in artificial silicate soils facilitated by arbuscular mycorrhizal fungi and glomalin-related soil protein.
DOI: 10.6084/m9.figshare.10275110
title: Reindeer grazing controls willows but has only minor effects on plant communities in Fennoscandian oroarctic mires

description: Shrubification of arctic tundra is a well-recognized phenomenon, and it can be particularly rapid in moist habitats. Reindeer grazing can inhibit shrubification, but grazing impacts on mire vegetation have been overlooked. We studied grazing effects on plant communities and <i>Salix lapponum</i> in oroarctic mires at the border of Finland and Norway. We compared plant community structure and <i>S. lapponum</i> abundance and traits between (1) grazed fens (Finland); (2) experimental exclosures (Finland), where reindeer have been kept out for 13 years; and (3) nongrazed fens (Norway). Grazing effect on shrubification was assessed using the Normalized Difference Vegetation Index (NDVI) and leaf area index (LAI). We did not find a uniform direction of vegetation change connected to the exclosure treatment, and grazing treatments were overlapping in multivariate ordination. Neither NDVI nor LAI indicated clear differences. Instead, significant results were revealed in total abundance of species groups and in <i>S. lapponum</i> traits. The cover of bryophytes was significantly lower under free grazing. Reindeer grazing reduced the abundance, height, and flowering and increased leaf N concentration of <i>S. lapponum</i>. We conclude that reindeer grazing controls willows and affects total abundance of important species groups, and plant community structure is resistant to grazing effects in oroarctic mires.
DOI: 10.6084/m9.figshare.10275110.v1
title: Reindeer grazing controls willows but has only minor effects on plant communities in Fennoscandian oroarctic mires

description: Shrubification of arctic tundra is a well-recognized phenomenon, and it can be particularly rapid in moist habitats. Reindeer grazing can inhibit shrubification, but grazing impacts on mire vegetation have been overlooked. We studied grazing effects on plant communities and <i>Salix lapponum</i> in oroarctic mires at the border of Finland and Norway. We compared plant community structure and <i>S. lapponum</i> abundance and traits between (1) grazed fens (Finland); (2) experimental exclosures (Finland), where reindeer have been kept out for 13 years; and (3) nongrazed fens (Norway). Grazing effect on shrubification was assessed using the Normalized Difference Vegetation Index (NDVI) and leaf area index (LAI). We did not find a uniform direction of vegetation change connected to the exclosure treatment, and grazing treatments were overlapping in multivariate ordination. Neither NDVI nor LAI indicated clear differences. Instead, significant results were revealed in total abundance of species groups and in <i>S. lapponum</i> traits. The cover of bryophytes was significantly lower under free grazing. Reindeer grazing reduced the abundance, height, and flowering and increased leaf N concentration of <i>S. lapponum</i>. We conclude that reindeer grazing controls willows and affects total abundance of important species groups, and plant community structure is resistant to grazing effects in oroarctic mires.
DOI: 10.6084/m9.figshare.10274759
title: Supplemental table of article "Reference transcriptome data in silkworm Bombyx mori"

description: Supplemental table 1Expressions data of the transcripts showing tpm value &gt; 100 at least one sample in Supporting data 4.<br>
DOI: 10.6084/m9.figshare.10274759.v1
title: Supplemental table of article "Reference transcriptome data in silkworm Bombyx mori"

description: Supplemental table 1Expressions data of the transcripts showing tpm value &gt; 100 at least one sample in Supporting data 4.<br>
DOI: 10.6084/m9.figshare.10274075
title: list of analysed projects

description: this is the list of projects (with URI) that was downloaded, and whose source code and ReadMe used for assignment to application domains
DOI: 10.6084/m9.figshare.10274078
title: Excel spreadsheet alternative to the nomogram to help explain probabilistic seismic hazard

description: An alternative in the form of an Excel spreadsheet to the nomogram to help explain probabilistic seismic hazard, which is also available on figshare. See the description of that nomogram for details and the associated journal article: https://link.springer.com/article/10.1007/s10950-019-09885-4.
DOI: 10.6084/m9.figshare.10274075.v1
title: list of analysed projects

description: this is the list of projects (with URI) that was downloaded, and whose source code and ReadMe used for assignment to application domains
DOI: 10.6084/m9.figshare.10273961
title: distance code

description: python codes
DOI: 10.6084/m9.figshare.10274012
title: How Common are Explicit Research Questions in Journal Articles?

description: <br>Supplementary data associated with the study: How Common are Explicit Research Questions in Journal Articles?<br>
DOI: 10.6084/m9.figshare.10273940
title: Subtree extraction benchmarks

description: This data set demonstrates the difference in processing time between a DBTree-indexed version of a tree and a Newick version. For both versions, a varying number of randomly drawn tips, ranging from 10 to over 40k, is extracted as a subtree from the topology of the Open Tree of Life.<br>On small subsets, the difference is especially dramatic: where subtrees for dozens of taxa are extracted in less than a second from the DBTree version, the Newick tree takes over ten minutes to be processed. Much of the processing time for the latter is taken up simply by the Newick string parsing operation.<br>For large subsets, the difference is less dramatic. For example, for a subtree of over 40k taxa, the DBTree implementation is about twice as fast as the Newick/Dendropy implementation. However, the difference in processing time is now no longer due primarily to the Newick string parsing: the initial data reading step takes about 10 minutes, but the total operation takes over two hours.<br>For more information, see: https://github.com/rvosa/bio-phylo-forest-dbtree
DOI: 10.6084/m9.figshare.10273952
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX). <br>1. lax-monthly-mean-min-temp-fahr-1992-2018.csv: contains the monthly mean of minimum temperature (Fahrenheit) that occurred in each month and year at LAX airport between 1992 and 2018. The data are organized with a row for each year (27 rows in order from 1992 to 2018) and a column for each month (12 columns in order from January through December). Note that this csv files does not contain headers.<br><br>2. lax-monthly-total-precip-inches-1992-2018.csv: contains the total monthly precipitation (inches) for each month and year in California between 1992 and 2018. The data are organized with a row for each month (in order from January to February) and a column for each year (in order from 1992 to 2018). Note that this .csv file has column headers for the year and one column for monthly mean (inches). <br>Source: National Weather Service
DOI: 10.6084/m9.figshare.10274012.v1
title: Research Questions and Explicit Purposes in Journal Articles

description: <br>Supplementary data associated witht the study: How Universal are Research Questions and Explicit Purposes in Journal Articles?<br>
DOI: 10.6084/m9.figshare.10273952.v1
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX).<br><br>Source: National Weather Service
DOI: 10.6084/m9.figshare.10273961.v1
title: Codes

description: Clustering python codes in our article.
DOI: 10.6084/m9.figshare.10274012.v2
title: How Common are Explicit Research Questions in Journal Articles?

description: <br>Supplementary data associated with the study: How Common are Explicit Research Questions in Journal Articles?<br>
DOI: 10.6084/m9.figshare.10273952.v2
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX).<br><br>Source: National Weather Service
DOI: 10.6084/m9.figshare.10273961.v2
title: Codes

description: Clustering python codes
DOI: 10.6084/m9.figshare.10273952.v3
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX).<br><br>Source: National Weather Service
DOI: 10.6084/m9.figshare.10273952.v4
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX).<br><br>Source: National Weather Service
DOI: 10.6084/m9.figshare.10273952.v5
title: Earth Analytics Bootcamp | Teaching Dataset | Temperature and Precipitation Data for Los Angeles Airport (LAX)

description: This teaching data subset contains data on total monthly precipitation (inches) and average monthly minimum temperature (Fahrenheit) in 1992 to 2018 at Los Angeles International Airport (LAX).<br><br>Source: National Weather Service
DOI: 10.21227/ccat-t091
title: Brazilian Flights Dataset

description: An integrated dataset containing data on departure and arrival data for Brazilian domestic flights comprising the period from the years 2000 to 2019.Composed of 15,506,069 records of flight data, each containing 51 attributes. The attributes include data regarding the airline, flight, airports, meteorological conditions, and scheduled and real times of departure and arrival.
DOI: 10.6084/m9.figshare.10273085
title: Spatial data [polygon]

description: spatial data (Gangnam in Seoul).
DOI: 10.6084/m9.figshare.10273085.v2
title: Spatial data [polygon]

description: spatial data (Gangnam in Seoul).
DOI: 10.6084/m9.figshare.10273085.v1
title: Spatial data [polygon]

description: spatial data (Gangnam in Seoul).
DOI: 10.6084/m9.figshare.10272551
title: De facto population data in 2018

description: De facto population data in Seoul, South Korea in 2018.
DOI: 10.6084/m9.figshare.10272551.v2
title: De facto population data in 2018

description: De facto population data in Seoul, South Korea in 2018.
DOI: 10.6084/m9.figshare.10272551.v1
title: De facto population data in 2018

description: De facto population data in Seoul, South Korea in 2018.
DOI: 10.6084/m9.figshare.10272224
title: <i>Eucalyptus camaldulensis</i> in South Africa – past, present, future

description: <i>Eucalyptus camaldulensis</i> can be seen as an iconic tree of superlatives. It is the eucalypt with the widest native range, and one of the most widely planted eucalypts around the globe. In South Africa, it is the most widespread and the most aggressively invasive eucalypt. It has many uses, but also causes major impacts. However, little is known about key aspects of its ecology in South Africa, including its invasion history, invasion processes and dynamics, and people’s perceptions of its positive and negative effects on ecosystems. Such knowledge is crucial for developing robust and defendable guidelines for sustainable management of the species. This paper provides a comprehensive dossier of the species in South Africa. It reviews what is known of its introduction and planting history, its current distribution, its value for commercial forestry and other uses, its impacts as an invasive species, pests and pathogens associated with the species, people’s perceptions of the species and conflicts of interest, and the options for management and restoration. The review reveals that <i>E. camaldulensis</i> is a tree of many contradictions in South Africa, making it a poster-child example of a conflict-generating non-native species. Based on available knowledge, we assess options for improved management. We highlight several knowledge gaps which need to be addressed in more detail through future research. It is hoped that this species profile will serve as a model for the types of information that are needed for developing objective management strategies for non-native tree species in different parts of the world.
DOI: 10.6084/m9.figshare.10272203
title: Metadata record for: Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure

description: This dataset contains key characteristics about the data described in the Data Descriptor Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10272224.v1
title: <i>Eucalyptus camaldulensis</i> in South Africa – past, present, future

description: <i>Eucalyptus camaldulensis</i> can be seen as an iconic tree of superlatives. It is the eucalypt with the widest native range, and one of the most widely planted eucalypts around the globe. In South Africa, it is the most widespread and the most aggressively invasive eucalypt. It has many uses, but also causes major impacts. However, little is known about key aspects of its ecology in South Africa, including its invasion history, invasion processes and dynamics, and people’s perceptions of its positive and negative effects on ecosystems. Such knowledge is crucial for developing robust and defendable guidelines for sustainable management of the species. This paper provides a comprehensive dossier of the species in South Africa. It reviews what is known of its introduction and planting history, its current distribution, its value for commercial forestry and other uses, its impacts as an invasive species, pests and pathogens associated with the species, people’s perceptions of the species and conflicts of interest, and the options for management and restoration. The review reveals that <i>E. camaldulensis</i> is a tree of many contradictions in South Africa, making it a poster-child example of a conflict-generating non-native species. Based on available knowledge, we assess options for improved management. We highlight several knowledge gaps which need to be addressed in more detail through future research. It is hoped that this species profile will serve as a model for the types of information that are needed for developing objective management strategies for non-native tree species in different parts of the world.
DOI: 10.6084/m9.figshare.10272164
title: Supplementary Material for: Neurological Improvement with Medical Cannabis in a Progressive Supranuclear Palsy Patient: A Case Report

description: Progressive supranuclear palsy (PSP) is a severe, debilitating, and often fatal disease resembling other neurodegenerative disorders, namely Alzheimer’s (AD) and Parkinson’s (PD) diseases, which have been successfully treated with cannabinoids. We herein report the case of a 71-year-old woman diagnosed with PSP, displaying severe impairment of motor and language functions which progressively improved after treatment with medical cannabis. Before treatment, the patient was unable to move her limbs, was fed soft food, and was unable to speak or move her eyes. The patient has regained horizontal eye movement, is able to walk with assistance, has returned to physiotherapy, started to eat solid food, and has had a remarkable improvement in her speech. The possible mechanisms of this improvement are discussed.
DOI: 10.6084/m9.figshare.10272203.v2
title: Metadata record for: Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure

description: This dataset contains key characteristics about the data described in the Data Descriptor Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10272203.v1
title: Metadata record for: Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure

description: This dataset contains key characteristics about the data described in the Data Descriptor Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10272164.v1
title: Supplementary Material for: Neurological Improvement with Medical Cannabis in a Progressive Supranuclear Palsy Patient: A Case Report

description: Progressive supranuclear palsy (PSP) is a severe, debilitating, and often fatal disease resembling other neurodegenerative disorders, namely Alzheimer’s (AD) and Parkinson’s (PD) diseases, which have been successfully treated with cannabinoids. We herein report the case of a 71-year-old woman diagnosed with PSP, displaying severe impairment of motor and language functions which progressively improved after treatment with medical cannabis. Before treatment, the patient was unable to move her limbs, was fed soft food, and was unable to speak or move her eyes. The patient has regained horizontal eye movement, is able to walk with assistance, has returned to physiotherapy, started to eat solid food, and has had a remarkable improvement in her speech. The possible mechanisms of this improvement are discussed.
DOI: 10.6084/m9.figshare.10272044
title: Supplementary Material for: Mood and Dysfunctional Cognitions Constitute Within-Subject Antecedents and Consequences of Exercise in Eating Disorders

description: Medicine
DOI: 10.6084/m9.figshare.10272044.v1
title: Supplementary Material for: Mood and Dysfunctional Cognitions Constitute Within-Subject Antecedents and Consequences of Exercise in Eating Disorders

description: Medicine
DOI: 10.6084/m9.figshare.10271987
title: Supplementary Material for: Expression of mTOR Signaling Pathway Molecules in Triple-Negative Breast Cancer

description: <b><i>Introduction:</i></b> Triple-negative breast cancer (TNBC), which lacks expression of estrogen receptor (ER), progesterone receptor (PgR), and epidermal growth factor receptor 2 (HER2), currently has no effective hormonal or molecular target therapy. <b><i>Objective and Methods:</i></b> To elucidate the role of the mammalian target of rapamycin (mTOR) signaling pathway in TNBC, the expression of molecules involved in mTOR signaling including mTOR, phosphorylated (p)-mTOR, p-4EBP1, GLUT1, GLUT3, HIF-1α, and Ki67 was investigated by immunohistochemistry in 35 TNBC and 81 non-TNBC cases. <b><i>Results:</i></b> Expression of p-mTOR, the activated form of mTOR, but not unphosphorylated mTOR, was significantly higher in non-TNBC cases than in TNBC cases. Expression of p-4EBP1, GLUT1, and GLUT3 was higher in TNBC cases than in non-TNBC cases. When the localization of p-mTOR was classified as nuclear, perinuclear, or cytoplasmic, nuclear localization of p-mTOR was observed more frequently in TNBC than in non-TNBC cases and was correlated with the expression of GLUT1 and GLUT3, which was related to proliferation activity examined with Ki67. <b><i>Conclusions:</i></b> mTOR signaling regulates cell proliferation in some cases of TNBC and may be a potential target of molecular therapy for TNBC.
DOI: 10.6084/m9.figshare.10271996
title: Table 1 data

description: Table 1 data
DOI: 10.6084/m9.figshare.10271996.v1
title: Table 1 data

description: Table 1 data
DOI: 10.6084/m9.figshare.10272002
title: Table 3 data

description: Table 3 data
DOI: 10.6084/m9.figshare.10271987.v1
title: Supplementary Material for: Expression of mTOR Signaling Pathway Molecules in Triple-Negative Breast Cancer

description: <b><i>Introduction:</i></b> Triple-negative breast cancer (TNBC), which lacks expression of estrogen receptor (ER), progesterone receptor (PgR), and epidermal growth factor receptor 2 (HER2), currently has no effective hormonal or molecular target therapy. <b><i>Objective and Methods:</i></b> To elucidate the role of the mammalian target of rapamycin (mTOR) signaling pathway in TNBC, the expression of molecules involved in mTOR signaling including mTOR, phosphorylated (p)-mTOR, p-4EBP1, GLUT1, GLUT3, HIF-1α, and Ki67 was investigated by immunohistochemistry in 35 TNBC and 81 non-TNBC cases. <b><i>Results:</i></b> Expression of p-mTOR, the activated form of mTOR, but not unphosphorylated mTOR, was significantly higher in non-TNBC cases than in TNBC cases. Expression of p-4EBP1, GLUT1, and GLUT3 was higher in TNBC cases than in non-TNBC cases. When the localization of p-mTOR was classified as nuclear, perinuclear, or cytoplasmic, nuclear localization of p-mTOR was observed more frequently in TNBC than in non-TNBC cases and was correlated with the expression of GLUT1 and GLUT3, which was related to proliferation activity examined with Ki67. <b><i>Conclusions:</i></b> mTOR signaling regulates cell proliferation in some cases of TNBC and may be a potential target of molecular therapy for TNBC.
DOI: 10.6084/m9.figshare.10272002.v1
title: Table 3 data

description: Table 3 data
DOI: 10.6084/m9.figshare.10271963
title: Figure 2 data

description: Figure 2 data<br>
DOI: 10.6084/m9.figshare.10271912
title: Fig 1 and table 4 data

description: Fig 1 and table 4 data
DOI: 10.6084/m9.figshare.10271963.v1
title: Figure 2 data

description: Figure 2 data<br>
DOI: 10.6084/m9.figshare.10271912.v1
title: Fig 1 and table 4 data

description: Fig 1 and table 4 data