cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/4txgp-az827
title: Acetonema longum

description: A. longum grown on 1,2 Propanediol Day1
description: <strong>Tilt Series Date:</strong> 2011-05-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown on 1,2 Propanediol</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-05-29-13/3dimage_25230/</p>tomo7_full.rec,  Reconstruction (Pixel Size 1.9 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-05-29-13/3dimage_25230/tomo7_full.rec"
        > <i class="download icon"></i> Download </a></p>

        tomo7.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-05-29-13/rawdata/tomo7.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.aqmvgr
title: Occurrence Download

description: A dataset containing 2614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus repens",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2614 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045438-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/3cq1p-xa285
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grow in LB</p>
<strong>Sample Preparation:</strong> Polara</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-15/rawdata/</p>3267c0015.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-15/rawdata/3267c0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267c0015_full.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-11-15/3dimage_16193/3267c0015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xzvnp-by504
title: Calubactor EB session22 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-08-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Zhuo/Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-21/rawdata/</p>09aug07a_b266c_029.mrc,  Tilt Series (Pixel Size 0.774 nm), 989.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-21/rawdata/09aug07a_b266c_029.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug07a_b266c_029_part.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-21/3dimage_8432/09aug07a_b266c_029_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/08a0e-re710
title: CB15N w/ methanol control

description: Raw data files of CB15N w/ methanol control
description: <strong>Tilt Series Date:</strong> 2009-10-10</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in PYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-46/rawdata/</p>09oct10b_WTCCmet_046.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-46/rawdata/09oct10b_WTCCmet_046.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct10b_WTCCmet_046_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-46/3dimage_10120/09oct10b_WTCCmet_046_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sc6vt-dh443
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-96/rawdata/</p>09aug01a_methanolgfmr1_096.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-96/rawdata/09aug01a_methanolgfmr1_096.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug01a_methanolgfmr1_096_part.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-96/3dimage_6281/09aug01a_methanolgfmr1_096_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16946076
title: SEM Withered Plant (BSE Series) — Kikoh Matsuura (Art–Science Archive)

description: Parent (series) record for *SEM Withered Plant (BSE)* by Kikoh Matsuura.  This record serves as the hub for all child datasets in the series.

**Files included:**- A series overview (TXT) documenting scope, naming rules, citation style, and file policy- A machine-readable index (CSV) that will be updated to list child datasets (DOIs, imaging parameters, etc.)

Each child dataset contains raw, uncompressed BMP images (≈13 per set, number varies) acquired on a TECHNEX TinySEM M3-i with the BSE detector under high-vacuum conditions.  Child records provide detailed READMEs with exact parameters (accelerating voltage, working distance, vacuum, pixel size, field of view, frame time, coating).

This parent provides a stable concept DOI for the entire *SEM Withered Plant (BSE)* series.  Child datasets link back via *IsPartOf*, and this parent enumerates them via *HasPart*.  

*This series visualizes the hidden order and chance in withered plants through SEM-BSE with full methodological transparency.*
DOI: 10.22002/yhk35-7y377
title: Pva 020409 007

description: Prosthecobacter vanneervenii, 09feb23a_Pva_plate__007_w2_007,
description: <strong>Tilt Series Date:</strong> 2009-02-23</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-02-23-17_slicer9374.jpg: nested vesicle, Prosthecobacter vanneervenii
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-23-17/rawdata/</p>09feb23a_Pva_plate__007_w2_007.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-23-17/rawdata/09feb23a_Pva_plate__007_w2_007.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb23a_Pva_plate__007_w2_007_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-23-17/3dimage_13678/09feb23a_Pva_plate__007_w2_007_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dtq2e-vth38
title: COS7 pNLDN

description: Cos7 cells transfected with pNLGFP provirus construct
description: <strong>Tilt Series Date:</strong> 2013-08-18</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Collaborators and Roles:</strong> pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells were grown on grids and transfected using lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-08-18-4/rawdata/</p>13aug18_C125_2_COS7pNLDN_AT1BT1_0005.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-08-18-4/rawdata/13aug18_C125_2_COS7pNLDN_AT1BT1_0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        13aug18_C125_2_COS7pNLDN_AT1BT1_0005_full.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-08-18-4/3dimage_29750/13aug18_C125_2_COS7pNLDN_AT1BT1_0005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ehqah-rqw72
title: Agrobacterium tumefaciens

description: Bald strain, flagellin A, B and C missing. D is present
description: <strong>Tilt Series Date:</strong> 2013-10-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on AB medium and induced with AS</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-30-26/rawdata/</p>bald20025.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-30-26/rawdata/bald20025.mrc"
        > <i class="download icon"></i> Download </a></p>

        bald20025_full.rec,  Reconstruction (Pixel Size 1.6 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-30-26/3dimage_33704/bald20025_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1n8g0-7fc52
title: PAOI delta aer2

description: Pseudomonas aeruginosa delta aer2
description: <strong>Tilt Series Date:</strong> 2014-10-15</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Streak on LB plates and incubate overnight at 37°C- Inoculate 5 mL MOPS Minimal Media Limited Nitrogen from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-17/rawdata/</p>PAO1DeltaAer2MC0017_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-17/rawdata/PAO1DeltaAer2MC0017_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        PAO1DeltaAer2MC0017_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-17/3dimage_47208/PAO1DeltaAer2MC0017_mcorr_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2mffmm
title: Occurrence Download

description: A dataset containing 8492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus repens",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8492 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045439-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/zqy3e-b2p14
title: A. longum grown on rhamnose

description: Raw data files of A. longum grown on rhamnose
description: <strong>Tilt Series Date:</strong> 2009-02-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, 60.0°), step: °, constant angular increment, dosage: 2001.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> anaerobic, on rhamnose</p>
<strong>Sample Preparation:</strong> quantifoil grid, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-20-3/rawdata/</p>carboxy7.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-20-3/rawdata/carboxy7.mrc"
        > <i class="download icon"></i> Download </a></p>

        carboxy7_full.rec,  Reconstruction (Pixel Size 1.9 nm), 335.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-20-3/3dimage_4530/carboxy7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.15588558
title: Forest Type Maps of South Korea Derived from Phenological Classification (2019–2021)

description: This forest type map was created based on Sentinel-2 satellite imagery, Envi Deep Learning, and the Forest Type Map of South Korea.

This forest type map was classified using five time series forest characteristics using Joon Kim's Phenolgical Classification methodology.

The forest type is Value 1 broad-leaved forest and Value 2 coniferous forest.

It shows a pattern of decreasing coniferous forest and increasing broad-leaved forest from 2019 to 2021.
description: I used Google Earth Engine to generate satellite imagery with code below

 

Map.centerObject(table,6);

var startDate_s1 = '20XX-XX-XX';var endDate_s1 = '20XX-XX-XX';

var s2 = ee.ImageCollection("COPERNICUS/S2_SR").select(['B2', 'B3', 'B4', 'B8', 'QA60']);

function maskS2srClouds(image) {  var qa = image.select('QA60');

  var cloudBitMask = 1 << 10;  var cirrusBitMask = 1 << 11;

  var mask = qa.bitwiseAnd(cloudBitMask).eq(0)      .and(qa.bitwiseAnd(cirrusBitMask).eq(0));

  return image.updateMask(mask).divide(10000);}

var s2_1Filt = s2.filterBounds(table)                .filterDate(startDate_s1,endDate_s1)                .filterMetadata('CLOUDY_PIXEL_PERCENTAGE',                                'less_than',30)                .map(maskS2srClouds);

var s2_1composite = s2_1Filt.median().clip(table); // can be changed to mean, min, etc 

Map.addLayer(s2_1composite,{bands:['B4','B3','B2'],min:0.1,max:0.4,                          gamma:1},'S2 2022 series 1');

Export.image.toDrive({  image: s2_1composite,  description: 's2_comp_s1_toGdrive',   fileNamePrefix: 's2_comp_2022_s1',   scale: 10,   region: table,  maxPixels: 1e13});
DOI: 10.5281/zenodo.15588557
title: Forest Type Maps of South Korea Derived from Phenological Classification (2019–2021)

description: This forest type map was created based on Sentinel-2 satellite imagery, Envi Deep Learning, and the Forest Type Map of South Korea.

This forest type map was classified using five time series forest characteristics using Joon Kim's Phenolgical Classification methodology.

The forest type is Value 1 broad-leaved forest and Value 2 coniferous forest.

It shows a pattern of decreasing coniferous forest and increasing broad-leaved forest from 2019 to 2021.
description: I used Google Earth Engine to generate satellite imagery with code below

 

Map.centerObject(table,6);

var startDate_s1 = '20XX-XX-XX';var endDate_s1 = '20XX-XX-XX';

var s2 = ee.ImageCollection("COPERNICUS/S2_SR").select(['B2', 'B3', 'B4', 'B8', 'QA60']);

function maskS2srClouds(image) {  var qa = image.select('QA60');

  var cloudBitMask = 1 << 10;  var cirrusBitMask = 1 << 11;

  var mask = qa.bitwiseAnd(cloudBitMask).eq(0)      .and(qa.bitwiseAnd(cirrusBitMask).eq(0));

  return image.updateMask(mask).divide(10000);}

var s2_1Filt = s2.filterBounds(table)                .filterDate(startDate_s1,endDate_s1)                .filterMetadata('CLOUDY_PIXEL_PERCENTAGE',                                'less_than',30)                .map(maskS2srClouds);

var s2_1composite = s2_1Filt.median().clip(table); // can be changed to mean, min, etc 

Map.addLayer(s2_1composite,{bands:['B4','B3','B2'],min:0.1,max:0.4,                          gamma:1},'S2 2022 series 1');

Export.image.toDrive({  image: s2_1composite,  description: 's2_comp_s1_toGdrive',   fileNamePrefix: 's2_comp_2022_s1',   scale: 10,   region: table,  maxPixels: 1e13});
DOI: 10.5281/zenodo.16937027
title: Genexpressions Dataset derived from FireBrowse

description: FireBrowse provides raw read counts of gene expression indexed by Ensembl and NCBI gene identifiers. We convert these raw counts into TPM (Transcripts Per Million) by normalizing for gene length and sequencing depth following. The resulting dataset contains expression values for 19,637 genes across 10,446 cases spanning 32 diagnoses. Data is human readible and tab seperated. In addition, we include an R package that can read these files.
DOI: 10.5281/zenodo.16937028
title: Genexpressions Dataset derived from FireBrowse

description: FireBrowse provides raw read counts of gene expression indexed by Ensembl and NCBI gene identifiers. We convert these raw counts into TPM (Transcripts Per Million) by normalizing for gene length and sequencing depth following. The resulting dataset contains expression values for 19,637 genes across 10,446 cases spanning 32 diagnoses. Data is human readible and tab seperated. In addition, we include an R package that can read these files.