cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/37wqy-0eq47
title: Shewanella OMV delMTR

description: Shewanella outer membrane vesicles, delMTR (cytochromes) knockout, high resolution
description: <strong>Tilt Series Date:</strong> 2018-09-12</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> C-Flat 2/2-300 mesh grid, 10nm BSA-gold, 100% humidity, -1.5 to -5 micron defocus</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/rawdata/</p>30_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/rawdata/30_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        30_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/3dimage_102948/30_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_30.mrc.mdoc,  24.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/rawdata/TS_30.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 2.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/file_20316/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 8.5 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-09-12-13/file_20317/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jh0hd-e1d09
title: Coxiella burnetii_wt_D15

description: Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-15  culture.
description: <strong>Tilt Series Date:</strong> 2016-11-04</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> TOMO3D</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.</p>
<strong>Sample Preparation:</strong> Refer to Heinzen lab</p>
  dga2016-11-04-99_slicer17264.jpg: T4SS
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-11-04-99/rawdata/</p>15D_Pos4_atlas20070.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-11-04-99/rawdata/15D_Pos4_atlas20070.mrc"
        > <i class="download icon"></i> Download </a></p>

        15D_Pos4_atlas20070_SIRT_1k.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-11-04-99/3dimage_108203/15D_Pos4_atlas20070_SIRT_1k.rec"
        > <i class="download icon"></i> Download </a></p>

        15D_Pos4_atlas20070.ali,  555.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        15D_Pos4_atlas20070.tlt,  624.0 B  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-11-04-99/file_24740/15D_Pos4_atlas20070.tlt"
        > <i class="download icon"></i> Download </a></p>

        15D_Pos4_atlas20070_fid.tlt,  624.0 B  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.n97cth
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthemis cotula",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 104 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037718-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjf47m
title: Occurrence Download

description: A dataset containing 1506562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Nepal",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1506562 records from 982 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037667-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47fzcm
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthemis cotula",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 133 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037721-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2sgb9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhagoletis tomatis Foote, 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011088-250515123054153/datasets/export for details.
DOI: 10.5281/zenodo.15277987
title: ICE-GAWS-2024

description: ICE-GAWS-2024 dataset
DOI: 10.25345/c5j38kw5n
title: MassIVE MSV000097721 - Developing probabilistic graphical models and analysis software to integrate multi-omics data
title: We are requesting the polar metabolomics analysis from a high-resolution time series experiment to develop probabilistic graphical models of bacterial-fungal-plant interactions. The experiment exposed resistant (line H7996) and susceptible (line FL8000) tomatoes (Solanum lycopersicum) to the select agent soil pathogen Ralstonia solanacearum (RS5) which is responsible for Bacterial Wilt. R. solanacearum infects plants through root wounds and colonizes vascular tissues. The pathogen rapidly multiplies and clogs the xylem vessels causing the infected plant to quickly wilt and die. Exopolysaccharides from R. solanacearum activate salicylic acid (SA) pathways in the resistant plants, but not in susceptible plants (Mansfield et al., 2012; Milling et al., 2011). A recent study suggested the microbiome plays a role in host susceptibility (Kwak et al., 2018). The system is being used as a model for developing new techniques in modeling bacterial-fungal-plant interactions and developing statistical methods to engineer microbial consortia from these graphical models. The work (proposal:httpas://doi.org/10.46936/10.25585/60000455) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.5281/zenodo.15275590
title: OLD
DOI: 10.5281/zenodo.15275591
title: OLD
DOI: 10.25345/c5db7w31x
title: MassIVE MSV000097722 - Tracking the degradation of fresh particulate organic matter in permeable riverbed sediments
title: This project builds upon a DOE Subsurface Biogeochemical Research (SBR) project on the transport and metabolism of fresh, photosynthetically-derived (mainly periphyton) particulate organic matter (POM) in near-surface riverbed sediments at the PNNL SFA Hanford 300 Area study site. We propose to utilize a combination of Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) and polar metabolomics, together with metagenomic/transcriptomic sequencing to track, in a substrate-explicit manner, the degradation of fresh POM in Hanford 300 Area riverbed sediments. The overarching hypothesis behind our proposed research is that there will be detectable chemical and (meta)genomic responses to the input of fresh POM. Many previous studies have demonstrated distinct metabolic and bulk geochemical responses to fresh POM input, and a few studies have directly examined the uptake and degradation of POM in permeable marine sediments. In addition, our recent studies at the Hanford 300 Area indicate that in situ input of fresh POM (likely dominated by periphyton detritus) to the near-surface riverbed is an important driver of both microbial community composition and activity in the vicinity of the Hanford 300 Area. This research was performed under the Facilities Integrating Collaborations for User Science (FICUS) program (proposal:https://doi.org/10.46936/fics.proj.2021.60033/60000394) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.6084/m9.figshare.31073152
title: Research Data of Nature Geoscience

description: Research Data of Nature Geoscience
DOI: 10.5281/zenodo.17348389
title: Chemical compounds in PM10 as a tool for source apportionment

description: This is version 2 of the dataset, including extended measurements.
DOI: 10.5281/zenodo.18254666
title: Dataset for article "Somatosensory input drives membrane potential dynamics  in motor cortex during voluntary limb movement"

description: Correspondence to be addressed to Luc Estebanez: luc.estebanez@cnrs.fr and James Poulet: james.poulet@mdc-berlin.de

Whole cell recordings in mouse M1 during forelimb behaviors, with and without somatosensory feedback from the forelimb. 

The single 6.5 Go HDF5 file includes 44 recordings. Each recording is an HDF Group that contains several datasets:



Data_ephys: the Vm samples (in mV, NaN when the recording failed or was interrupted), and the corresponding times in T_ephys.

X_limb_tracking and Y_limb_tracking: the X and Y position of the IR reflector positioned on the right forelimb of the mouse. The corresponding time samples are in T_limb_tracking.

The status (touched by the limb: 1, not touched: 0) of the capacitive sensors that form the rest ("rest_sensor") and target ("touch_sensor") surfaces, and corresponding times are in T_sensor. 

the opening of the valve that delivers a reward water droplet ("water_sensor"), and corresponding times are in T_sensor. 


In addition, each Group comes with 2 attributes: cortical_layer (either 23 or 5 for Layer 2/3 or Layer 5), and is_nerve_cut (0: feedback remains. 1: feedback removed).
DOI: 10.5281/zenodo.18254667
title: Dataset for article "Somatosensory input drives membrane potential dynamics  in motor cortex during voluntary limb movement"

description: Correspondence to be addressed to Luc Estebanez: luc.estebanez@cnrs.fr and James Poulet: james.poulet@mdc-berlin.de

Whole cell recordings in mouse M1 during forelimb behaviors, with and without somatosensory feedback from the forelimb. 

The single 6.5 Go HDF5 file includes 44 recordings. Each recording is an HDF Group that contains several datasets:



Data_ephys: the Vm samples (in mV, NaN when the recording failed or was interrupted), and the corresponding times in T_ephys.

X_limb_tracking and Y_limb_tracking: the X and Y position of the IR reflector positioned on the right forelimb of the mouse. The corresponding time samples are in T_limb_tracking.

The status (touched by the limb: 1, not touched: 0) of the capacitive sensors that form the rest ("rest_sensor") and target ("touch_sensor") surfaces, and corresponding times are in T_sensor. 

the opening of the valve that delivers a reward water droplet ("water_sensor"), and corresponding times are in T_sensor. 


In addition, each Group comes with 2 attributes: cortical_layer (either 23 or 5 for Layer 2/3 or Layer 5), and is_nerve_cut (0: feedback remains. 1: feedback removed).
DOI: 10.15468/dl.24y75k
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.47.117_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 59 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011449-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekn2c3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"CHN.16.5_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011451-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyprex
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorbus glabriuscula)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011452-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fduj7c
title: Occurrence Download

description: A dataset containing 3331681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1954-2026"
 ]
}

 The dataset includes 3331681 records from 648 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011373-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18255398
title: Cleome trachycarpa Klotzsch ex Eichler. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18255399
title: Cleome trachycarpa Klotzsch ex Eichler. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.15468/dl.9emdm2
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.47.118_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 134 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011453-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18255411
title: Clinopodium L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18255410
title: Clinopodium L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.1285/i20356609v18i3p534
title: The Grammar of Israeli Settler Colonial Violence and the Genocidal War Waged on Gaza: from the Nakba to the 7th of October 2023

description: This article analyses the official and unofficial Israeli discourse(s) towards Palestinians since October 7, 2023. These discourses are separate from established historical colonial ones, but the article sheds light on the shifts in semantic structures and uses pertaining to meanings and connotations. First, the article offers examples of official Israeli speeches outlining fundamentally colonial discourses when it comes to arguments and narratives re-employed in the current context of the genocide. Thus, the article examines discourses that fall within the binary structures of the ordinariness of evil; good and evil; progress and savagery; enlightenment and darkness (immorality), and the 'animalization of the Palestinians'. This logic of binarity facilitates calls for forced displacement, urbicide, domicide, annihilations of families, the killing of children, deprivation of food, water and fuel, closures to aid, bombings of cemeteries and hospitals, bombings of Islamic and Christian places of worships, killings of paramedics and volunteers in civil protection and humanitarian aid. Second, the article examines genocidal warfare, which relies on the negation of the existence of Palestinians as a people and community, and the dehumanization's process which allows for the destruction of the land and the people of Palestine. In particular, the article looks at the violence organized against Palestinians of the West Bank since 7th of October, by interrogating the speeches that accompany such acts of violence undertaken by both settlers and military forces. The focus lies on the analysis of the socio-political backgrounds of actors and the discursive and material mobilization of Israeli parties and organizations.
DOI: 10.6084/m9.figshare.29876984
title: Tree species longevity dataset associated with Brienen et al. 2025, Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms.

description: Maximum tree longevity estimates for 739 tree species based on tree ring data, radiocarbon datings and other sources, associated with Brienen et al 2025 - <i>Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms</i>. Dataset includes information on species functional traits, climate and other information needed to reproduce figures and statistics presented in the main article.
DOI: 10.6084/m9.figshare.29876984.v5
title: Tree species longevity dataset associated with Brienen et al. 2025, Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms.

description: Maximum tree longevity estimates for 739 tree species based on tree ring data, radiocarbon datings and other sources, associated with Brienen et al 2025 - <i>Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms</i>. Dataset includes information on species functional traits, climate and other information needed to reproduce figures and statistics presented in the main article.
DOI: 10.6084/m9.figshare.29876984.v4
title: Tree species longevity dataset associated with Brienen et al. 2025, Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms.

description: Maximum tree longevity estimates for 739 tree species based on tree ring data, radiocarbon datings and other sources, associated with Brienen et al 2025 - <i>Global variation in tree longevity: contrasting drivers for angiosperms and gymnosperms</i>. Dataset includes information on species functional traits, climate and other information needed to reproduce figures and statistics presented in the main article.
DOI: 10.5281/zenodo.18255421
title: Clinopodium brownei (Sw.) Kuntze. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18255420
title: Clinopodium brownei (Sw.) Kuntze. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44