cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4673715
title: Development of a noninvasive genotyping-in-thousands (GTseq) panel for long-term conservation of western Great Lakes gray wolves (Canis lupus)

description: This file explains all of the variables in each of the datasets that accompany: 

Development of a noninvasive genotyping-in-thousands (GTseq) panel for long-term population conservation

Samuel D. Hervey, Bridgett M. vonHoldt, Mark C. Romanski, and Kristin E. Brzeski

HERVEY2025_SupplementaryMaterials.docx>>word document containing the supplementary information, figures and, tables referenced from the main text

HERVEY2025_Genotypes.xlsx>>excel spreadsheet containing all GTseq microhaplotypes and microsatellite genotypes to recreate all figures from the main text. Spreadsheet also contains the IDs and population IDs for RADseq data with connecting ID to GTseq data when comparing the two methods. See Summary tab within spreadsheet for more detail on specific fields of information.

HERVEY2025_WGL_GTseq_LocusSpecific_Indexing_NextSeqCustom_Oligos.xlsx>>excel spreadsheet with lists of locus specific primers for PCR1, indexing primers for PCR2, and custom primer for NextSeq 1000/2000 library preps.

flip_trim_sbfI_150821.pl>>custom perl script for retaining reads with Sbf1 cut site and demultiplexing library pools.

HERVEY2025_Figure5-RADseq>>VCF file of SNPs from RADseq data for recreating structure plot from figure 5 in the main text.

HERVEY2025_Figure6-RADseq>>VCF file of SNPs from RADseq data for recreating PIDsib calculation from main text and kinship analyses from CKMRsim.
DOI: 10.5281/zenodo.4673716
title: Development of a noninvasive genotyping-in-thousands (GTseq) panel for long-term conservation of western Great Lakes gray wolves (Canis lupus)

description: This file explains all of the variables in each of the datasets that accompany: 

Development of a noninvasive genotyping-in-thousands (GTseq) panel for long-term population conservation

Samuel D. Hervey, Bridgett M. vonHoldt, Mark C. Romanski, and Kristin E. Brzeski

HERVEY2025_SupplementaryMaterials.docx>>word document containing the supplementary information, figures and, tables referenced from the main text

HERVEY2025_Genotypes.xlsx>>excel spreadsheet containing all GTseq microhaplotypes and microsatellite genotypes to recreate all figures from the main text. Spreadsheet also contains the IDs and population IDs for RADseq data with connecting ID to GTseq data when comparing the two methods. See Summary tab within spreadsheet for more detail on specific fields of information.

HERVEY2025_WGL_GTseq_LocusSpecific_Indexing_NextSeqCustom_Oligos.xlsx>>excel spreadsheet with lists of locus specific primers for PCR1, indexing primers for PCR2, and custom primer for NextSeq 1000/2000 library preps.

flip_trim_sbfI_150821.pl>>custom perl script for retaining reads with Sbf1 cut site and demultiplexing library pools.

HERVEY2025_Figure5-RADseq>>VCF file of SNPs from RADseq data for recreating structure plot from figure 5 in the main text.

HERVEY2025_Figure6-RADseq>>VCF file of SNPs from RADseq data for recreating PIDsib calculation from main text and kinship analyses from CKMRsim.
DOI: 10.60712/si-id48795.2
title: StrainInfo SI-ID 48795.2

description: StrainInfo dataset 48795 about a strain of Butyrivibrio hungatei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48796.2
title: StrainInfo SI-ID 48796.2

description: StrainInfo dataset 48796 about a strain of Pseudobutyrivibrio xylanivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48797.2
title: StrainInfo SI-ID 48797.2

description: StrainInfo dataset 48797 about a strain of Thermonema rossianum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48798.2
title: StrainInfo SI-ID 48798.2

description: StrainInfo dataset 48798 about a strain of Thermonema rossianum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48799.3
title: StrainInfo SI-ID 48799.3

description: StrainInfo dataset 48799 about a strain of Thermonema rossianum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48800.2
title: StrainInfo SI-ID 48800.2

description: StrainInfo dataset 48800 about a strain of Butyrivibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48801.2
title: StrainInfo SI-ID 48801.2

description: StrainInfo dataset 48801 about a strain of Butyrivibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48802.2
title: StrainInfo SI-ID 48802.2

description: StrainInfo dataset 48802 about a strain of Butyrivibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48803.2
title: StrainInfo SI-ID 48803.2

description: StrainInfo dataset 48803 about a strain of Butyrivibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48804.3
title: StrainInfo SI-ID 48804.3

description: StrainInfo dataset 48804 about a strain of Exiguobacterium aestuarii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48805.2
title: StrainInfo SI-ID 48805.2

description: StrainInfo dataset 48805 about a strain of Frigoribacterium faeni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.17632/p52b75zpwv.1
title: Observed Sub-grid Scale Variations of Air-Sea Heat Flux

description: This is the heat flux datasets used in the article.
DOI: 10.60712/si-id48806.3
title: StrainInfo SI-ID 48806.3

description: StrainInfo dataset 48806 about a strain of Frigoribacterium faeni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48807.3
title: StrainInfo SI-ID 48807.3

description: StrainInfo dataset 48807 about a strain of Desulfonatronum lacustre. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48808.2
title: StrainInfo SI-ID 48808.2

description: StrainInfo dataset 48808 about a strain of Pseudomonas jessenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48809.2
title: StrainInfo SI-ID 48809.2

description: StrainInfo dataset 48809 about a strain of Butyrivibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48810.2
title: StrainInfo SI-ID 48810.2

description: StrainInfo dataset 48810 about a strain of Pseudobutyrivibrio xylanivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48811.3
title: StrainInfo SI-ID 48811.3

description: StrainInfo dataset 48811 about a strain of Tindallia magadiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48812.3
title: StrainInfo SI-ID 48812.3

description: StrainInfo dataset 48812 about a strain of Thermoanaerobacter wiegelii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48813.2
title: StrainInfo SI-ID 48813.2

description: StrainInfo dataset 48813 about a strain of Xanthobacter flavus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48814.3
title: StrainInfo SI-ID 48814.3

description: StrainInfo dataset 48814 about a strain of Acidimicrobium ferrooxidans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48816.2
title: StrainInfo SI-ID 48816.2

description: StrainInfo dataset 48816 about a strain of Desulfitobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48817.2
title: StrainInfo SI-ID 48817.2

description: StrainInfo dataset 48817 about a strain of Gordonia rubripertincta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48818.3
title: StrainInfo SI-ID 48818.3

description: StrainInfo dataset 48818 about a strain of Desulforamulus aeronauticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.17632/4gnywgrdcb.1
title: Crop disease Strawberry disease

description: ### Data and Notable Findings
#### Data Collection
Data on strawberry diseases was gathered through various methods, including field observations, laboratory analyses, and the use of advanced imaging techniques. For instance, studies have used pre-trained models like VGG19, Inception V3, ResNet50, and DenseNet121 to identify diseases such as angular leaf spot, anthracnose, gray mold, and powdery mildew. Other research has employed real-time detection algorithms like YOLOv8, enhanced with mechanisms like CBAM attention and ODConv, to improve detection accuracy.

#### Notable Findings
1. **Disease Prevalence and Impact**:
 - **Anthracnose**: Caused by fungi like _Colletotrichum acutatum_, it affects foliage, runners, crowns, and fruit, leading to significant yield losses.
 - **Fusarium Wilt**: A soil-borne disease caused by _Fusarium oxysporum_, it thrives in warm conditions and can cause sudden wilting and death of plants.
 - **Neopestalotiopsis Leaf, Fruit, and Crown Rot**: An emerging fungal disease that affects all parts of the plant, causing significant crop loss in the southeastern US.
2. **Detection Accuracy**:
 - Transfer learning with deep convolutional neural networks (CNNs) has shown superior performance in identifying strawberry diseases. For example, ResNet-50 achieved an accuracy of 94.4%, highlighting the effectiveness of these techniques.
 - Enhanced models like YOLOv8, with incorporated improvements, have balanced accuracy, speed, and computation for real-time disease detection.

### Data Interpretation
#### Understanding the Data
The data indicates that different diseases have distinct symptoms and optimal conditions for development. For instance, anthracnose is most common on ripening or mature fruit, with whitish or tan lesions that turn brown and sunken. Fusarium wilt, on the other hand, causes yellowing and wilting of leaves, particularly under warm conditions. Neopestalotiopsis rot can cause leaf spots, crown infections with reddening of leaves, and fruit lesions with black sporulation.

#### Use of Data
The data can be used to:
1. **Inform Management Practices**: By understanding the conditions that favor disease development, growers can implement preventive measures such as using disease-free plants, proper irrigation, and sanitation.
2. **Guide Disease Detection**: Advanced detection methods, like those using deep learning, can help in early and accurate identification of diseases. This enables timely intervention, reducing the spread and impact of diseases.
3. **Develop Disease-Resistant Varieties**: Insights from the data can aid in breeding or selecting strawberry varieties that are more resistant to prevalent diseases.

In summary, the data highlights the significant impact of various diseases on strawberry crops and demonstrates the potential of advanced detection techniques to improve disease management and crop yield.
DOI: 10.60712/si-id48819.2
title: StrainInfo SI-ID 48819.2

description: StrainInfo dataset 48819 about a strain of Clostridium pascui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48820.3
title: StrainInfo SI-ID 48820.3

description: StrainInfo dataset 48820 about a strain of Clostridium pascui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.14939830
title: High-Resolution WRF Model Simulations for Offshore Wind Resource Assessment in Spanish Territorial Waters (1990-2014)

description: This dataset consists of annual output files from simulations performed using the Weather Research and Forecasting (WRF) Model version 4.3.3, with a spatial resolution of 0.1° in latitude and longitude. The simulations cover the period 1990–2014 and were generated to analyze the historical offshore wind energy resource in Spanish territorial waters.

Each annual file, named “wrfpost_d02_XXXX.nc” (where XXXX represents the year), is stored in netCDF4 format and follows CF-1.6 conventions. The simulation domain (d02) is configured with a Lambert Conformal projection.

Geographical Coverage



Minimum Latitude: 33.239681°N

Maximum Latitude: 49.625706°N

Minimum Longitude: -17.924255°E

Maximum Longitude: 7.781036°E


Variables Included

Each file contains the following atmospheric variables at different heights and time steps:



Sea Level Pressure (slp) [hPa]

2m Air Temperature (t2m) [K]

10m Wind Components (u10m, v10m) [m/s]

10m Wind Speed and Direction (ws10m, wd10m) [m/s, degrees]

100m Wind Components (u100m, v100m) [m/s]

100m Wind Speed and Direction (ws100m, wd100m) [m/s, degrees]


Methodology and Data Sources

These high-resolution simulations were conducted as part of the study:

📖 Thomas, B., Costoya, X., Decastro, M., Insua-Costa, D., Senande-Rivera, M., & Gómez-Gesteira, M. (2023). Downscaling CMIP6 climate projections to classify the future offshore wind energy resource in the Spanish territorial waters. Journal of Cleaner Production, 433, 139860. DOI: 10.1016/j.jclepro.2023.139860

The WRF model was forced with climate projections from the CMIP6 multimodel ensemble published in:

📖 Xu, Z., Han, Y., Tam, C.-Y., Yang, Z.-L., & Fu, C. (2021). Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100). Scientific Data, 8, 293. DOI: 10.1038/s41597-021-01079-3

 

Acknowledgement:Computation took place at Finisterrae III supercomputer that belongs to CESGA (Centro de Supercomputación de Galicia) located at Santiago de Compostela, Galicia, Spain.
DOI: 10.5281/zenodo.14939831
title: High-Resolution WRF Model Simulations for Offshore Wind Resource Assessment in Spanish Territorial Waters (1990-2014)

description: This dataset consists of annual output files from simulations performed using the Weather Research and Forecasting (WRF) Model version 4.3.3, with a spatial resolution of 0.1° in latitude and longitude. The simulations cover the period 1990–2014 and were generated to analyze the historical offshore wind energy resource in Spanish territorial waters.

Each annual file, named “wrfpost_d02_XXXX.nc” (where XXXX represents the year), is stored in netCDF4 format and follows CF-1.6 conventions. The simulation domain (d02) is configured with a Lambert Conformal projection.

Geographical Coverage



Minimum Latitude: 33.239681°N

Maximum Latitude: 49.625706°N

Minimum Longitude: -17.924255°E

Maximum Longitude: 7.781036°E


Variables Included

Each file contains the following atmospheric variables at different heights and time steps:



Sea Level Pressure (slp) [hPa]

2m Air Temperature (t2m) [K]

10m Wind Components (u10m, v10m) [m/s]

10m Wind Speed and Direction (ws10m, wd10m) [m/s, degrees]

100m Wind Components (u100m, v100m) [m/s]

100m Wind Speed and Direction (ws100m, wd100m) [m/s, degrees]


Methodology and Data Sources

These high-resolution simulations were conducted as part of the study:

📖 Thomas, B., Costoya, X., Decastro, M., Insua-Costa, D., Senande-Rivera, M., & Gómez-Gesteira, M. (2023). Downscaling CMIP6 climate projections to classify the future offshore wind energy resource in the Spanish territorial waters. Journal of Cleaner Production, 433, 139860. DOI: 10.1016/j.jclepro.2023.139860

The WRF model was forced with climate projections from the CMIP6 multimodel ensemble published in:

📖 Xu, Z., Han, Y., Tam, C.-Y., Yang, Z.-L., & Fu, C. (2021). Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100). Scientific Data, 8, 293. DOI: 10.1038/s41597-021-01079-3

 

Acknowledgement:Computation took place at Finisterrae III supercomputer that belongs to CESGA (Centro de Supercomputación de Galicia) located at Santiago de Compostela, Galicia, Spain.
DOI: 10.60712/si-id48821.2
title: StrainInfo SI-ID 48821.2

description: StrainInfo dataset 48821 about a strain of Clostridium pascui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48822.2
title: StrainInfo SI-ID 48822.2

description: StrainInfo dataset 48822 about a strain of Clostridium pascui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48823.2
title: StrainInfo SI-ID 48823.2

description: StrainInfo dataset 48823 about a strain of Methanohalophilus euhalobius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48824.2
title: StrainInfo SI-ID 48824.2

description: StrainInfo dataset 48824 about a strain of Desulfurella kamchatkensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48825.2
title: StrainInfo SI-ID 48825.2

description: StrainInfo dataset 48825 about a strain of Desulfurella propionica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48826.2
title: StrainInfo SI-ID 48826.2

description: StrainInfo dataset 48826 about a strain of Hippea maritima. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.17632/p8gc8ghb5c.1
title: Understanding Customer Preferences at Kanoko Coffee Shop for Sustainable Sales

description: There are three main source dataset for this Customer Preference from Kanoko Coffee Shop, that consist of Google Review, Facebook Review, and Pergi Kuliner Review. We find that from the three sources, there are some similar review from the customer that have visited Kanoko Coffee Shop. We use the dataset to help us understanding and analyzing pattern of each customer preferences that are reviewing Kanoko Coffee Shop. And we find there are many important factors that have effect to the sales of a Coffee Shop.
DOI: 10.60712/si-id48827.2
title: StrainInfo SI-ID 48827.2

description: StrainInfo dataset 48827 about a strain of Hippea maritima. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48828.2
title: StrainInfo SI-ID 48828.2

description: StrainInfo dataset 48828 about a strain of Pseudoglutamicibacter cumminsii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48829.2
title: StrainInfo SI-ID 48829.2

description: StrainInfo dataset 48829 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48830.2
title: StrainInfo SI-ID 48830.2

description: StrainInfo dataset 48830 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48831.2
title: StrainInfo SI-ID 48831.2

description: StrainInfo dataset 48831 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48832.3
title: StrainInfo SI-ID 48832.3

description: StrainInfo dataset 48832 about a strain of Ammonifex degensii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48833.3
title: StrainInfo SI-ID 48833.3

description: StrainInfo dataset 48833 about a strain of Schwartzia succinivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48834.2
title: StrainInfo SI-ID 48834.2

description: StrainInfo dataset 48834 about a strain of Schwartzia succinivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.17632/3dxycyxjc5.1
title: Data: Predicting Chinese stock market from three perspectives: A GARCH-MIDAS model with adaptive LASSO method

description: REsearch data used in the analysis
DOI: 10.60712/si-id48835.3
title: StrainInfo SI-ID 48835.3

description: StrainInfo dataset 48835 about a strain of Schwartzia succinivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id48836.2
title: StrainInfo SI-ID 48836.2

description: StrainInfo dataset 48836 about a strain of Schwartzia succinivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.