cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3604577_d2.v1
title: Additional file 4: Table S2. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Phosphorylation sites detected in Ravikumar et al. [30] and current study. Comparison between phosphorylation sites detected during B. subtilis vegetative growth and germination. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3604577_d4.v1
title: Additional file 7: Table S4. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Estimated occupancies of phosphorylation sites detected in this study. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3604577_d5.v1
title: Additional file 2: Table S1. of Phosphoproteome dynamics mediate revival of bacterial spores

description: The germinating spore phosphoproteome. Phospho-sites identified in this study were clustered according to their biological processes, as assigned by the DAVID functional annotation tool. (XLSX 27 kb)
DOI: 10.17863/cam.52378
title: Research Data supporting "First Characterization of a Superconducting Filter-bank Spectrometer for Hyper-spectral Microwave Atmospheric Sounding with Transition Edge Sensor Readout."

description: Data Set collected and modelled during Hymas Programme 2018-2019. Data measured at cryogenic temperatures.
DOI: 10.6084/m9.figshare.c.3604655_d1.v1
title: Additional file 6: Table S3. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: Definitions of landmarks. (XLSX 492Â kb)
DOI: 10.6084/m9.figshare.c.3604661_d1.v1
title: Additional file 2: Table S1. of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Overview of study characteristics of included studies. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604631_d8.v1
title: Additional file 6: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Pathway enrichment results from GeneSCF for p53 bound genes at 0Â h (Case study 2) predicted by GeneSCF using KEGG as a reference database. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3604664_d1.v1
title: Additional file 1: of Glucosamine sulfate suppresses the expression of matrix metalloproteinase-3 in osteosarcoma cells in vitro

description: Minimal data set underlying our findings. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3604631_d9.v1
title: Additional file 4: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Cancer type enrichment results from GeneSCF for CLL associated differentially expressed genes (Case study 1) predicted using NCG as reference database. (XLS 17 kb)
DOI: 10.6084/m9.figshare.c.3604655_d2.v1
title: Additional file 3: Table S4. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: Regional sub-population sample sizes by subspecies and cranial view. (XLSX 482Â kb)
DOI: 10.6084/m9.figshare.c.3604661_d2.v1
title: Additional file 1: of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Appendix. Primary search strategy for MEDLINE. Primary search strategy for PsycINFO. Selection criteria (inclusion & exclusion). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604631_d10.v1
title: Additional file 3: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: The list of CLL associated differentially expressed genes used for case study 1 and the list of p53 bound genes in HCT116 cell line treated with DNA-damage-inducing drug at two different time points (0 and 12Â h) used for case study 2. (XLS 273 kb)
DOI: 10.6084/m9.figshare.c.3604661_d3.v1
title: Additional file 3: Table S2. of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Effect sizes reported for included studies. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3604631_d11.v1
title: Additional file 12: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Enrichment analysis results for list-B genes from GeneSCF and DAVID 6.7 using Reactome as a reference database. (XLS 233 kb)
DOI: 10.6084/m9.figshare.c.3604655_d5.v1
title: Additional file 2: Table S3. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: MVZ specimen catalog numbers and views represented. (XLSX 495Â kb)
DOI: 10.17863/cam.40218
title: Research data supporting 'Fluid-Dynamic Gauging for Studying the Initial Swelling of Soft Solid Layers'

description: This data set contains experimental data, supplementary material and a Methods description associated with the paper of the same title published in AIChEJ. The data set shows experimental results associated with the calibration and testing of the new SiDG device. The Supplementary Material includes additional experimental material, codes in python and OpenFOAM to allow readers to create similar results, and working diagrams of the experimental apparatus so that the reader can make an SiDG device.
DOI: 10.6084/m9.figshare.c.3604631_d12.v1
title: Additional file 1: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: The list of organisms supported by GeneSCF for KEGG pathway database. (XLS 542 kb)
DOI: 10.6084/m9.figshare.c.3604679_d1.v1
title: Additional file 14: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Enrichment analyses of NLR-IDs. Summary of hypergeometric tests for each domain present in NLR-IDs in each plant species. (XLSX 84 kb)
DOI: 10.17863/cam.80890
title: Research data supporting "Multivariate Analysis of Disorder in Metal–Organic Frameworks"

description: These files include the data published in the paper "Multivariate Analysis of Disorder in Metal–Organic Frameworks", Adam F. Sapnik, et al., Nature Communications, 2022. Figure 3 Powder X-ray diffraction data: Excel data file (.XLSX) (name: PXRD) file 1 Figure 4 X-ray structure factor data: Excel data file (.XLSX) (name: Structure Factors) file 2 Figure 7 X-ray pair distribution functions: Excel data file (.XLSX) of MIL-100 (name: MIL-100 D(r)) file 3 Excel data file (.XLSX) of Fe-BTC (name: Fe-BTC D(r)) file 4 Figure 10 X-ray pair distribution functions: Excel data file (.XLSX) of TIF-4 (name: TIF-4 D(r)) file 5 Figure 11 X-ray structure factor data: Excel data file (.XLSX) of TIF-4 (name: TIF-4 S(Q)) file 6
DOI: 10.6084/m9.figshare.c.3604775_d1.v1
title: Additional file 2: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: HRM primer list based on the polymorphic SNPs between YCM334 and Taean. (XLSX 63194Â kb)
DOI: 10.17863/cam.86770
title: research data supporting "Tracking Water Dimers in Ambient Nanocapsules by Vibrational Spectroscopy"

description: Nanoconfined few-molecule water clusters are invaluable systems to study fundamental aspects of hydrogen bonding. Unfortunately, most experiments on water clusters must be performed at cryogenic temperatures. Probing water clusters in non-cryogenic systems is however crucial to understand the behaviour of confined water in atmospheric or biological settings, but such systems usually require either complex synthesis and/or introduce many confounding external bonds to the clusters. Here, we show that combining Raman spectroscopy with cucurbiturils, molecular nanocapsules with a nearly ‘gas-like’ inner cavity, is a powerful technique to sequester and analyse water clusters in ambient conditions. We observe sharp peaks in vibrational spectra arising from a single rigid confined water dimer. The high resolution and rich information in these vibrational spectra allow us to track specific isotopic exchanges inside the water dimer, verified with density-functional theory and kinetic population modelling. We showcase the versatility of such molecular nanocapsules by tracking water cluster vibrations through systematic changes in confinement size, in temperatures up to 120°C, and in their chemical environment.
DOI: 10.6084/m9.figshare.c.3604757_d6.v1
title: Additional file 5: Table S2. of Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation

description: Components of the 233 CVGs. (XLSX 132Â kb)
DOI: 10.6084/m9.figshare.c.3604781_d1.v1
title: MOESM2 of A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina 
                     sativa

description: Additional file 2. Bypass RNA seq data. Excel file containing RNA sequencing data from DEF2, DEF2+TG1 and WT lines.
DOI: 10.60893/figshare.pof.27905400
title: Supplement Number 1

description: The relationship between current density and contact angle, and surface roughness.
DOI: 10.60893/figshare.pof.27905400.v1
title: Supplement Number 1

description: The relationship between current density and contact angle, and surface roughness.
DOI: 10.6084/m9.figshare.c.3604775_d2.v1
title: Additional file 6: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: SNPs exerting the nonsynounymous protein changes on NBS-LRR genes. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d3.v1
title: Additional file 4: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: Indel based CAPS primers. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d4.v1
title: Additional file 3: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: CAPS primer set and restriction enzyme for detecting polymorphism on genic regions. (XLSX 6953Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d5.v1
title: Additional file 5: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: The list of gene-associated SNPs with type, positions and sequence context. (XLSX 11974Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d6.v1
title: Additional file 7: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: CAPS genotyping results in 156 RIL population from a cross of YCM334 and Taean using selected SNP marker (CA04G03400 SNP1, Additional file 1: Figure S1) and BW resistance phenotype scored from 1 (most resistant) to 5 (most susceptible). (XLSX 13Â kb)
DOI: 10.17863/cam.9741
title: Data supporting 'Measurement and Modelling of Human Sensory Feedback in Car Driving'

description: Research data supporting the PhD thesis 'Measurement and Modelling of Human Sensory Feedback in Car Driving'.
DOI: 10.6084/m9.figshare.c.3604853_d11.v1
title: Additional file 3: of Genomic consequences of selection and genome-wide association mapping in soybean

description: Detail Information of 125 selection features and corresponding candidate genes. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3604853_d13.v1
title: Additional file 11: of Genomic consequences of selection and genome-wide association mapping in soybean

description: The list of 342 soybean landraces and 1062 improved lines sampled in this study. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3604901_d2.v1
title: Additional file 2: Table S2. of Evidence for common horizontal transmission of Wolbachia among butterflies and moths

description: Description of available MLST strains of Wolbachia in Lepidoptera used in this study (accessed March 2014 at http://pubmlst.org/Wolbachia/ ). (XLSX 48 kb)
DOI: 10.17863/cam.74820
title: Research data supporting "Design, development, and validation of a strand-specific RT-qPCR assay for GI and GII human Noroviruses"

description: 1. raw images collected directly gel-doc imager 2. raw qPCR data files exported from Viia7 or StepOnePlus qPCR machine 3. sequence alignment files for calivirus strains presented in the manuscript
DOI: 10.6084/m9.figshare.c.3604901_d4.v1
title: Additional file 1: Table S1. of Evidence for common horizontal transmission of Wolbachia among butterflies and moths

description: All published publicly available MLST strains of Wolbachia used in this study (accessed March 2014 at http://pubmlst.org/Wolbachia/ ). (XLSX 80 kb)
DOI: 10.17863/cam.12265
title: Research data supporting Optical Imaging of Large Gyroid Grains in Block Copolymer Templates by Confined Crystallization

description: datasets from figures in paper
DOI: 10.5281/zenodo.14507028
title: High bandgap perovskites for efficient indoor light harvesting data figures

description: Files providing the data to generate the figures for the publication
DOI: 10.6084/m9.figshare.c.3605006_d1.v1
title: Additional file 2: of The relevance of cortical lesions in patients with multiple sclerosis

description: Detailed analyses of attentional, mnestic and executive functions (z-scores). (XLS 29Â kb)
DOI: 10.17863/cam.55363
title: Research data supporting "Recurrent processing drives perceptual plasticity"

description: Learning and experience are critical for translating ambiguous sensory information from our environments to perceptual decisions. Yet, evidence on how training molds the adult human brain remains controversial, as fMRI at standard resolution does not allow us to discern the finer-scale mechanisms that underlie sensory plasticity. Here, we combine ultra-high field (7T) functional imaging at sub-millimetre resolution with orientation discrimination training to interrogate experience-dependent plasticity across cortical depths that are known to support dissociable brain computations. Our results provide evidence for recurrent plasticity, by contrast to sensory encoding vs. feedback mechanisms. We demonstrate that learning alters orientation-specific representations in superficial rather than middle V1 layers, suggesting changes in read-out rather than input signals. Further, learning increases feedforward rather than feedback layer-to-layer connectivity in occipito-parietal regions, suggesting that sensory plasticity gates perceptual decisions. Our findings reveal finer-scale plasticity mechanisms that re-weight sensory signals to inform improved decisions, bridging the gap between micro- and macro- circuits of experience-dependent plasticity. $$ \ $$ See the file 'Description of uploaded data' for a detailed description of the dataset.
DOI: 10.6084/m9.figshare.c.3605006_d2.v1
title: Additional file 1: of The relevance of cortical lesions in patients with multiple sclerosis

description: Neuropsychological tests summarized in the three cognitive indices. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3605021_d2.v1
title: Additional file 2: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

description: Primer sequences of the microcosm genes analysed by real-time RT-PCR. (XLSX 18 kb)
DOI: 10.17863/cam.16808
title: Research data and software supporting PTPmesh: Data Center Network Latency Measurements Using PTP

description: Dataset collected for the publication PTPmesh: Data Center Network Latency Measurements Using PTP
DOI: 10.6084/m9.figshare.c.3605021_d3.v1
title: Additional file 5: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

description: Expression levels of genes of the simplified soil microcosm. (XLSX 39274 kb)
DOI: 10.5281/zenodo.14507027
title: High bandgap perovskites for efficient indoor light harvesting data figures

description: Files providing the data to generate the figures for the publication
DOI: 10.6084/m9.figshare.c.3605030_d2.v1
title: Additional file 5: Table S3. of Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy

description: FPKM values of the 6172 common genes. (XLSX 986Â kb)
DOI: 10.6084/m9.figshare.c.3605042_d1.v1
title: Additional file 3: of ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research

description: Target file (mandatory input file) to run ClinQC. (TXT 1 kb)
DOI: 10.17863/cam.82548
title: Research data supporting "A Simple and Efficient Approach to Unsupervised Instance Matching and its Application to Linked Data of Power Plants"

description: The ZIP archive contains files for two new domains: Power plants in the United Kingdom and in Germany, respectively. The files have been used to train and evaluate algorithms in the field of instance matching. For each domain, there is a subdirectory containing two data files (tableA.csv and tableB.csv) and three labelled sample files (train.csv, valid.csv and test.csv). The files use Magellan's CSV format (see https://github.com/anhaidgroup/deepmatcher/blob/master/Datasets.md). The README.txt file contains additional information. The instance matching code was published on https://github.com/cambridge-cares/TheWorldAvatar.
DOI: 10.17863/cam.108078
title: Research data supporting "Near-infrared luminescent open-shell π-conjugated systems with a lowest-energy zwitterionic singlet excited state"

description: The compressed (.zip) folder contains solution-state absorption and emission spectra of (M2TTM)2–CDT and p(M1TTM–CDT), and their time-dependent UV-vis absorption spectra in toluene with a concentration of 5.0 × 10-5 M. solution-state UV-vis absorption spectrum of M2TTM–CDT–Ph in toluene and its DFT calculation files. Solution-state temperature-variant EPR in toluene with a concentration of 50 um, and solid-state SQUID data with their fitting parameters. Cyclic voltammograms in both solution and film states as well as electrochromic switching data.
DOI: 10.6084/m9.figshare.c.3605162_d1.v1
title: MOESM1 of A comparison of work-related physical activity levels between inpatient and outpatient physical therapists: an observational cohort trial

description: Additional file 1. Â Accelerometry data.
DOI: 10.6084/m9.figshare.c.3605153_d2.v1
title: Additional file 27: Table S18. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: List of the primers used for the qPCR and qRT-PCR reactions. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3605168_d1.v1
title: MOESM1 of The kdr-bearing haplotype and susceptibility to Plasmodium falciparum in Anopheles gambiae: genetic correlation and functional testing

description: Additional file 1: Table S1. Catalogue of polymorphic SNPs used in the study.
DOI: 10.6084/m9.figshare.c.3605153_d3.v1
title: Additional file 12: Table S7. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: List of genes with significant differential expression between FCB and FCB pfmdr1_3â ˛KD in a stage-specific manner. Genes with significantly higher expression displayed absolute fold change values &gt;1.5 and normalized fold changes values two standard deviations above the median normalized fold change value. Fold change for each gene at the designated stage is indicated. No gene appeared to be significantly differently expressed between the two strains during both ring and schizont stages. Genes from antigenic variant families have been removed. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3605153_d4.v1
title: Additional file 23: Table S15. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: Gene expression correlation between P. falciparum genes and either pfcrt or pfmdr1. Pearson correlation coefficients were calculated between pfcrt/pfmdr1 expression values and those of other 2,600 P. falciparum genes across 110 pairwise comparisons. These correspond to bi-directional comparisons between 11 parasite transcriptome data sets, including FCB and 7G8 data sets. (A) List of genes whose expression is highly correlated (PCC &gt;0.7) to that of pfcrt. (B) List of genes whose expression is highly anti-correlated (PCC 0.7) to that of pfmdr1. (D) List of genes whose expression is highly anti-correlated (PCC
DOI: 10.6084/m9.figshare.c.3605153_d5.v1
title: Additional file 18: Table S12. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: Genes with significant differential expression between 7G8 pfcrt_CTL and 7G8 pfcrt_T76K in a stage-specific manner. Genes with significantly higher expression displayed absolute fold changes &gt;1.5 and normalized fold changes values two standard deviations above the median normalized fold change value. Genes with significantly lower expression had absolute fold change values lower than 0.6 and a normalized fold change three standard deviations below the median value. Fold change for each gene at the designated stage is indicated. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3605153_d6.v1
title: Additional file 13: Table S8. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: List of genes with significant differential expression between FCB and 106/1 in a stage-specific manner. Genes with significantly higher expression displayed absolute fold changes &gt;1.5 and normalized fold changes values two standard deviations above the median normalized fold change value. Genes with significantly lower expression had absolute fold change values lower than 0.6 and a normalized fold change three standard deviations below the median value. Fold change for each gene at the designated stage is indicated. (XLSX 66 kb)
DOI: 10.60797/irj.2024.150.143.2
title: Результаты исследований рапы озера Баскунчак

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.17863/cam.24917
title: Research data supporting "Fabrication of scaffold-based 3D magnetic nanowires for domain wall applications"

description: SEM images and MOKE data of 3D nanomagnetic structures included in the publication.
DOI: 10.60797/irj.2024.150.143.3
title: Результаты исследований рапы озера Баскунчак

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.6084/m9.figshare.c.3605243_d3.v1
title: Additional file 3: of Global DNA methylation profiling uncovers distinct methylation patterns of protocadherin alpha4 in metastatic and non-metastatic rhabdomyosarcoma

description: Results of DNA microarray data analysis using iChip. The main output of iChip is a bed file format that we modified to include the reference gene for the enriched region and the reference probe enrichment score (the probe with the largest enrichment value in the region). More specifically, the fields are the following: chromosome (chr), genomic start and end position of the enriched region (gstart and gend respectively), the gene name associated to the probe with the largest enrichment value (gene), the enrichment value expressed as moderated t-statistics using eBayes function (limma-t), the row number of gstart and gend in the position matrix (rstart and rend respectively), the genomic position where the probe has the largest enrichment value (peakpos), the mean posterior probability of the probes in the enriched region (meanpp), the maximum posterior probability of the probes in the enriched region (maxpp) and the number of probes in the enriched region (nprobe). (XLS 242 kb)
DOI: 10.60797/irj.2024.150.146.1
title: Недельные урочные часы предмета «Естествознание» в основных шести классах медресе «Усмания»

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024