cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7834658.v1
title: Supplementary Materials for Dapas et al JCEM 2019

description: These files contains supplemental methods, results, tables, and figures for Dapas et al. Family-based quantitative trait meta-analysis implicates rare noncoding variants in <i>DENND1A</i> in polycystic ovary syndrome, <i>JCEM</i>, 2019.
DOI: 10.6084/m9.figshare.7834640
title: source data - Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis.xlsx

description: The data associated to the document entitled “Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis”, published in Nature Communications, are available in this Excel chart. This document combined, in a unique chart, all the data collected during this study.
DOI: 10.6084/m9.figshare.7834640.v1
title: source data - Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis.xlsx

description: The data associated to the document entitled “Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis”, published in Nature Communications, are available in this Excel chart. This document combined, in a unique chart, all the data collected during this study.
DOI: 10.6084/m9.figshare.7834625
title: The sequences of haplotypes of red swamp crayfish Procambarus clarkii

description: The 206 individual samples collected from 22 populations comprised 46 unique haplotypes, and the statistical parsimony analysis revealed three distinct networks.
DOI: 10.6084/m9.figshare.7834631
title: Positive gene correlates for APOE4+ females, Temporal cortex

description: Positive gene correlates for APOE4+ females Temporal cortex
DOI: 10.6084/m9.figshare.7834625.v1
title: The sequences of haplotypes of red swamp crayfish Procambarus clarkii

description: The 206 individual samples collected from 22 populations comprised 46 unique haplotypes, and the statistical parsimony analysis revealed three distinct networks.
DOI: 10.6084/m9.figshare.7834631.v1
title: Positive gene correlates for APOE4+ females, Temporal cortex

description: Positive gene correlates for APOE4+ females Temporal cortex
DOI: 10.6084/m9.figshare.7834619
title: Positive gene correlates for APOE4+ females, Parietal cortex

description: Positive gene correlates for APOE4+ females Parietal cortex
DOI: 10.6084/m9.figshare.7834598
title: Positive gene correlates for APOE4+ females, Frontal white matter

description: Positive gene correlates for APOE4+ females <br>Frontal white matter
DOI: 10.6084/m9.figshare.7834613
title: Positive gene correlates for APOE4+ females, Hippocampus

description: Positive gene correlates for APOE4+ females <br>Hippocampus
DOI: 10.6084/m9.figshare.7834613.v1
title: Positive gene correlates for APOE4+ females, Hippocampus

description: Positive gene correlates for APOE4+ females <br>Hippocampus
DOI: 10.6084/m9.figshare.7834505
title: Online Supplement 6 - Version 5 Results

description: Online Supplement 6 - Version 5 Results
DOI: 10.6084/m9.figshare.7834508
title: Online Supplement 4 - Version 3 Results (9x6 - 3x2)

description: Online Supplement 4 - Version 3 Results
DOI: 10.6084/m9.figshare.7834598.v1
title: Positive gene correlates for APOE4+ females, Frontal white matter

description: Positive gene correlates for APOE4+ females <br>Frontal white matter
DOI: 10.6084/m9.figshare.7834505.v1
title: Online Supplement 6 - Version 5 Results

description: Online Supplement 6 - Version 5 Results
DOI: 10.6084/m9.figshare.7834619.v2
title: Positive gene correlates for APOE4+ females, Parietal cortex

description: Positive gene correlates for APOE4+ females Parietal cortex
DOI: 10.6084/m9.figshare.7834502
title: Online Supplement 3 - Version 2 Results (9x6 - 3x2)

description: Online Supplement 3 - Version 2 Results
DOI: 10.6084/m9.figshare.7834619.v1
title: Untitled ItemPositive gene correlates for APOE4+ females, Parietal cortex

description: Positive gene correlates for APOE4+ females Parietal cortex
DOI: 10.6084/m9.figshare.7834496
title: Online Supplement 2 - Version 1 Results (9x6 - 3x2)

description: Online Supplement 2 - Version 1 Results
DOI: 10.6084/m9.figshare.7834499
title: Online Supplement 4 - Version 3 Results

description: Online Supplement 4 - Version 3 Results
DOI: 10.6084/m9.figshare.7834508.v1
title: Online Supplement 7 - Version 6 Results

description: Online Supplement 7 - Version 6 Results
DOI: 10.6084/m9.figshare.7834499.v1
title: Online Supplement 4 - Version 3 Results

description: Online Supplement 4 - Version 3 Results
DOI: 10.6084/m9.figshare.7834508.v3
title: Online Supplement 4 - Version 3 Results (9x6 - 3x2)

description: Online Supplement 4 - Version 3 Results
DOI: 10.6084/m9.figshare.7834496.v1
title: Online Supplement 3 - Version 2 Results

description: Online Supplement 2 - Version 1 Results
DOI: 10.6084/m9.figshare.7834508.v2
title: Online Supplement 4 - Version 3 Results

description: Online Supplement 7 - Version 6 Results
DOI: 10.6084/m9.figshare.7834478
title: Online Supplement 1 - Problem Instances (9x6 - 3x2)

description: Online Supplement 1 - Problem Instances (9x6 - 3x2)<br>
DOI: 10.6084/m9.figshare.7834490
title: Online Supplement 2 - Version 1 Results

description: Version 1 Results
DOI: 10.6084/m9.figshare.7834496.v3
title: Online Supplement 2 - Version 1 Results (9x6 - 3x2)

description: Online Supplement 2 - Version 1 Results
DOI: 10.6084/m9.figshare.7834502.v2
title: Online Supplement 5 - Version 4 Results

description: Online Supplement 5 - Version 4 Results
DOI: 10.6084/m9.figshare.7834475
title: ADEON EN615 Fine Scale Acoustic Survey (FSAS) binned into cells of 100 m horizontal and 5 m vertical.

description: A total of eleven fine scale acoustic surveys (FSAS) were conducted on the AR025 cruise, and a total of nine surveys were conducted on the EN615 cruise. Each FSAS was composed of 6 to 9 transects running across an approximately 10km<sup>2 </sup>area centered on the lander at each of the seven ADEON sites. All FSAS data from the AR025 and EN615 cruises has been processed using Echoview software, as described in the readme file.<br>Please see https://adeon.unh.edu/data_portal for additional details.
DOI: 10.6084/m9.figshare.7834496.v2
title: Online Supplement 2 - Version 1 Results

description: Online Supplement 2 - Version 1 Results
DOI: 10.6084/m9.figshare.7834502.v4
title: Online Supplement 3 - Version 2 Results (9x6 - 3x2)

description: Online Supplement 3 - Version 2 Results
DOI: 10.6084/m9.figshare.7834490.v1
title: Online Supplement 2 - Version 1 Results

description: Version 1 Results
DOI: 10.6084/m9.figshare.7834502.v3
title: Online Supplement 3 - Version 2 Results

description: Online Supplement 5 - Version 4 Results
DOI: 10.6084/m9.figshare.7834475.v2
title: ADEON EN615 Fine Scale Acoustic Survey (FSAS) binned into cells of 100 m horizontal and 5 m vertical.

description: A total of eleven fine scale acoustic surveys (FSAS) were conducted on the AR025 cruise, and a total of nine surveys were conducted on the EN615 cruise. Each FSAS was composed of 6 to 9 transects running across an approximately 10km<sup>2 </sup>area centered on the lander at each of the seven ADEON sites. All FSAS data from the AR025 and EN615 cruises has been processed using Echoview software, as described in the readme file.<br>Please see https://adeon.unh.edu/data_portal for additional details.
DOI: 10.6084/m9.figshare.7834478.v1
title: Online Supplement 1 - Test Cases

description: Test Cases<br>
DOI: 10.6084/m9.figshare.7834463
title: ADEON AR25 Fine Scale Acoustic Survey (FSAS) binned into cells of 100 m horizontal and 5 m vertical.

description: A total of eleven fine scale acoustic surveys (FSAS) were conducted on the AR025 cruise, and a total of nine surveys were conducted on the EN615 cruise. Each FSAS was composed of 6 to 9 transects running across an approximately 10km2 area centered on the lander at each of the seven ADEON sites. All FSAS data from the AR025 and EN615 cruises has been processed using Echoview software, as described in the readme file. <br>For more information please see https://adeon.unh.edu/data_portal
DOI: 10.6084/m9.figshare.7834463.v1
title: ADEON AR25 Fine Scale Acoustic Survey (FSAS) binned into cells of 100 m horizontal and 5 m vertical.

description: A total of eleven fine scale acoustic surveys (FSAS) were conducted on the AR025 cruise, and a total of nine surveys were conducted on the EN615 cruise. Each FSAS was composed of 6 to 9 transects running across an approximately 10km2 area centered on the lander at each of the seven ADEON sites. All FSAS data from the AR025 and EN615 cruises has been processed using Echoview software, as described in the readme file. <br>For more information please see https://adeon.unh.edu/data_portal
DOI: 10.6084/m9.figshare.7834475.v1
title: ADEON EN615 Fine Scale Acoustic Survey (FSAS) binned into cells of 100 m horizontal and 5 m vertical.tem

description: A total of eleven fine scale acoustic surveys (FSAS) were conducted on the AR025 cruise, and a total of nine surveys were conducted on the EN615 cruise. Each FSAS was composed of 6 to 9 transects running across an approximately 10km<sup>2 </sup>area centered on the lander at each of the seven ADEON sites. All FSAS data from the AR025 and EN615 cruises has been processed using Echoview software, as described in the readme file.<br>Please see https://adeon.unh.edu/data_portal for additional details.
DOI: 10.6084/m9.figshare.7834478.v2
title: Online Supplement 1 - Test Cases (9x6 - 3x2)

description: Test Cases<br>
DOI: 10.6084/m9.figshare.7834442.v1
title: Corticothalamic communication under analgesia, sedation and gradual ischemia: a multimodal model of controlled gradual cerebral ischemia in pig

description: Brain injuries and ensuing neurological abnormalities due to chronic hypoxia are among the most frequent causes and difficult to detect reliably. Prevention strategies require novel accurate methods. We showed that electrocorticogram's mutual information properties (ECoG) contain information about corticothalamic communication, which can be quantified without invasive insertion of the thalamic electrodes.Here we present the method and the data set to derive ECoG/EEG biomarkers of corticothalamic communication under normal, sedation and hypoxic/ischemic conditions.We hypothesize that the proposed biomarkers of corticothalamic communication derived from EEG alone will signal increased risk for or an imminent brain injury from short periods of data (less than 10 min).We present a mathematical approach to derive a novel signature of coupling between the ECoG and electrothalamogram (EThG) signals that were recorded under conditions of gradual ischemia in juvenile pigs using modern nonlinear spectral, complexity and coupling analyses.We hope this data set will contribute to development of new brain monitoring technologies to improve prevention of neurological injuries.All experiments have been approved by the responsible animal ethics committee.
DOI: 10.6084/m9.figshare.7834325
title: EN626 Fish Tag Counts

description: The ADEON bottom landers are equipped with Vemco Fish Finders which record the tag number of any tagged fish that passes through its vicinity. The fish counters are co-located with the AZPF instruments. While ADEON has 7 acoustic listening sites, the AZFP's and the fish counters are found only at, VAC, HAT, and JAX locations. To see these locations on a map, visit the ADEON projects website. https://adeon.unh.edu<br>This dataset covers having the instrument in the ocean from June - November 2018.
DOI: 10.6084/m9.figshare.7833989
title: Raw Data: Visual plasticity and exercise revisited: no evidence for a "cycling lane"

description: Data as recorded by binocular rivalry program in comma-separated-variable format. One file per block. The first line of the file indicates the orientation of the grating shown to each eye. The events are given with the time (in seconds) that the event occurred.<br>Three types of button presses were made by subjects, either indicating the percept of a <i><b>left</b></i> oblique grating (angle +45), a <i><b>right</b></i> oblique grating (angle -45), or a <i><b>mixed</b></i> percept of the two. Note that the left and right oblique gratings only correspond to the left and right <i>eyes </i>for one of the two possible stimulus arrangements (where the left oblique grating is presented to the left eye and the right oblique grating is presented to the right eye, coded as"Left 45 Right -45"). It is therefore necessary to convert these grating orientation responses into the equivalent <i>eye</i> responses in subsequent data processing.<br>The responses are sampled from the keyboard roughly every 0.01 seconds. For the two earliest tested subjects (S1 and S7) every sample is written to the file, so a continued keypress will result in many of the same response being recorded (~100 per second). To reduce the file size and simplify analysis, for subsequent subjects we recorded only when the response had <i>changed</i> from the previous sample. Deleting the duplicated responses from S1 and S7 is a trivial step in data pre-processing. Response durations are therefore the difference in time between the beginning of that response (e.g. when the program recorded a "left" button press) and the beginning of the next different response (e.g. the program records a "mixed" button press). Therefore the duration of the final response is not specified, as it is terminated by the end of the testing rather than a keyboard response indicating a perceptual transition.
DOI: 10.6084/m9.figshare.7834262
title: EN626-MicroCAT-CTD

description: This dataset provides 6 months worth of MicroCAT-CTD data received at ADEON's 7 bottom-lander collection sites. A readme file is included. Recording dates span June 2018 through November 2018<br>See https://adeon.unh.edu/ for more details.
DOI: 10.6084/m9.figshare.7834262.v1
title: EN626-MicroCAT-CTD

description: This dataset provides 6 months worth of MicroCAT-CTD data received at ADEON's 7 bottom-lander collection sites. A readme file is included. Recording dates span June 2018 through November 2018<br>See https://adeon.unh.edu/ for more details.
DOI: 10.6084/m9.figshare.7834325.v1
title: EN626 Fish Tag Counts

description: The ADEON bottom landers are equipped with Vemco Fish Finders which record the tag number of any tagged fish that passes through its vicinity. The fish counters are co-located with the AZPF instruments. While ADEON has 7 acoustic listening sites, the AZFP's and the fish counters are found only at, VAC, HAT, and JAX locations. To see these locations on a map, visit the ADEON projects website. https://adeon.unh.edu<br>This dataset covers having the instrument in the ocean from June - November 2018.
DOI: 10.6084/m9.figshare.7834325.v3
title: EN626 Fish Tag Counts

description: The ADEON bottom landers are equipped with Vemco Fish Finders which record the tag number of any tagged fish that passes through its vicinity. The fish counters are co-located with the AZPF instruments. While ADEON has 7 acoustic listening sites, the AZFP's and the fish counters are found only at, VAC, HAT, and JAX locations. To see these locations on a map, visit the ADEON projects website. https://adeon.unh.edu<br>This dataset covers having the instrument in the ocean from June - November 2018.
DOI: 10.6084/m9.figshare.7832996
title: Bhuyian_and_Kalyanapu_2019_Results.xlsx

description: This spreadsheet contains our results from applying RiBaSIC methodology on the following rivers:<br>SA1. Willamette River in Oregon, USASA2. Kushiyara River in BangladeshSA3. Jamuna River in BangladeshSA4. Solimoes River in Brazil
DOI: 10.6084/m9.figshare.7834325.v2
title: EN626 Fish Tag Counts

description: The ADEON bottom landers are equipped with Vemco Fish Finders which record the tag number of any tagged fish that passes through its vicinity. The fish counters are co-located with the AZPF instruments. While ADEON has 7 acoustic listening sites, the AZFP's and the fish counters are found only at, VAC, HAT, and JAX locations. To see these locations on a map, visit the ADEON projects website. https://adeon.unh.edu<br>This dataset covers having the instrument in the ocean from June - November 2018.
DOI: 10.6084/m9.figshare.7832357.v2
title: Nice to know vs. need to know: A survey of PT program stakeholders on essential anatomy course content required for excellent clinical care

description: Anatomical knowledge is the foundation of safe clinical practice. The varying scopes of practice between healthcare professions requires anatomy educators determine what content is essential to teach1. If possible, the educator bases this decision on their clinical experiences. This is a more significant challenge for non-clinicians (~50% of nationwide PT anatomy course faculty)2. Although studies have explored essential anatomy content across many healthcare professions and content areas3,4,5, no study has explored PT gross anatomy. Previous studies have also sourced opinions from expert anatomists and not a broader base of stakeholders such as program faculty, recent graduates, and clinical instructors. Furthermore, there is paucity of data on the preparedness and capability of graduates to apply anatomical knowledge to clinical practice.
DOI: 10.6084/m9.figshare.7832012
title: Genome - Capsaspora owczarzaki's (v4)

description: Seitaro Denbo, Katsutoshi Aono, Takaaki Kai, Rei Yagasaki, <b>Iñaki Ruiz-Trillo</b>, Hiroshi Suga. Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome.Develop. Growth Differ. 2019;61:34–42.<br><br> <i></i>
DOI: 10.6084/m9.figshare.7831964
title: Supplementary Material for: Genetic Variant Screening of DNA Repair Genes in Myelodysplastic Syndrome Identifies a Novel Mutation in the <b><i>XRCC2</i></b> Gene

description: <b><i>Background:</i></b> We aimed to detect single nucleotide polymorphisms (SNPs) and mutations in DNA repair genes and their possible association with myelodysplastic syndrome (MDS). <b><i>Methods:</i></b> Targeted enrichment resequencing of 84 DNA repair genes was initially performed on a screening cohort of MDS patients. Real-time polymerase chain reaction was used for genotyping selected SNPs in the validation cohort of patients. <b><i>Results:</i></b> A heterozygous frameshift mutation in the <i>XRCC2</i> gene was identified. It leads to the formation of a truncated non-functional protein and decreased <i>XRCC2</i> expression level. Decreased expression levels of all DNA repair genes functionally connected with mutated <i>XRCC2</i> were also present. Moreover, a synonymous substitution in the <i>PRKDC</i> gene<i></i> and 2 missense mutations in the <i>SMUG1</i> and <i>XRCC1</i> genes were also found. In the screening cohort, 6 candidate SNPs were associated with the tendency to develop MDS: rs4135113 (TDG, p = 0.03), rs12917 (MGMT, p = 0.003), rs2230641 (CCNH, p = 0.01), rs2228529 and rs2228526 (ERCC6, p = 0.04 and p = 0.03), and rs1799977 (MLH1, p = 0.04). In the validation cohort, only a polymorphism in <i>MLH1</i> was significantly associated with development of MDS in patients with poor cytogenetics (p = 0.0004). <b><i>Conclusion:</i></b> Our study demonstrates that genetic variants are present in DNA repair genes of MDS patients and may be associated with susceptibility to MDS.
DOI: 10.6084/m9.figshare.7831925
title: Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model

description: Mass spectrometry DAT files.
DOI: 10.6084/m9.figshare.7831853
title: Analysis of Chinese Tourists in Japan by Text Mining of a Hotel Portal Site

description: With an increasingly large number of Chinese tourists in Japan, the hotel industry is in need of an affordable market research tool that does not rely on expensive and time consuming surveys or inter- views. Because this problem is real and relevant to the hotel industry in Japan, and otherwise completely unexplored in other studies, we have extracted a list of potential keywords from Chinese reviews of Japanese hotels in the hotel portal site Ctrip using a mathematical model to then use them in a sentiment analysis with a machine learning classifier. While most studies that use information collected from the internet use pre-existing data analysis tools, in our study we designed the mathematical model to have the highest possible performing results in classification, while also exploring on the potential business implications these may have.
DOI: 10.6084/m9.figshare.7831925.v1
title: Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model

description: Mass spectrometry DAT files.
DOI: 10.6084/m9.figshare.7831784
title: Topics on digital history blogs

description: This data set covers the output of an LDA topic modelling exercise analysing the blogs of 73 historians in the period 2008-2017. Due to copyrighted material, the text files analysed are not included in the data set. In the spreadsheets I have therefore removed columns listing file names. Topics were generated using Topic Modeling Tool. Of 60 topics, 32 are of interest, related to historical material, historical subjects, methodology, digital humanities, and academia.<br>
DOI: 10.6084/m9.figshare.7831772
title: Data from: Unravelling intra- and intersegmental neuronal connectivity between central pattern generating networks in a multi-legged locomotor system

description: This fileset contains extracellular recordings from four different experimental setups:<br>1) Meso-Meta recordings (Meso_Meta)<br>2) Meso-Meta recordings comparing intact and cut connectives (Cut connectives)<br>3) Pro-Meso recordings (Pro_Meso)4) Pro-Meso-Meta recordings (Pro_Meso_Meta)<br><br>The order of the electrodes is either defined in the header of the file or in a separate channel.txt file.<b> </b>Additionally, the Spike2 recordings (Experiments: 1 and 3) can be found in a subfolder labeled "Spike Files".
DOI: 10.6084/m9.figshare.7831781
title: Artifact and instructions to generate experimental results for TACAS 2019 paper: Computing the Expected Execution Time of Probabilistic Workflow Nets

description: This is the artifact accompanying the paper "Computing the Expected Execution Time of Probabilistic Workflow Nets", accepted for TACAS 2019. Timed Probabilistic Workflow Nets (TPWN) are a model for business process modeling extended with time and probabilistic information. In the paper, we have shown that computing the excepted execution time of a TPWN is #P-hard, even for simple net structures. We then developed an exponential time algorithm to compute the expected execution time, and evaluated it on a set of real-word workflow net benchmarks. As a result, we obtained that for most nets, the time can be computed efficiently despite the theoretical hardness.<br><br>This artifact can be used to reproduce the results given in Section 6 "Experimental evaluation" of the paper. It includes the workflow and process mining workbench ProM together with the plugin we implemented to compute the expected execution time. Further, this artifact contains a set of 642 workflow nets from IBM, annotated with 3 sets of random times and probabilities, and scripts to compute the expected execution time of all nets and aggregate the results. This can be used to validate the results in Table 1. Also, the workflow net from the BPI Challenge shown in Fig. 4 of the paper is included, in a deterministic and probabilistic version. This net can be analyzed using ProM to validate the results in Table 2.
DOI: 10.6084/m9.figshare.7831784.v1
title: Topics on digital history blogs

description: This data set covers the output of an LDA topic modelling exercise analysing the blogs of 73 historians in the period 2008-2017. Due to copyrighted material, the text files analysed are not included in the data set. In the spreadsheets I have therefore removed columns listing file names. Topics were generated using Topic Modeling Tool. Of 60 topics, 32 are of interest, related to historical material, historical subjects, methodology, digital humanities, and academia.<br>