cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18286178
title: Correcting Citation Inflation via Bayesian Knowledge Integration: A Scalable Framework Validated on OpenAlex Data

description: This paper introduces the Bayesian Knowledge Integration Index (BKII), a novel bibliometric metric designed to evaluate the quality and interdisciplinary integration of scientific contributions while correcting for citation inflation and manipulative practices. BKII employs a hierarchical Bayesian model using Negative Binomial likelihood to handle overdispersed citation counts, integrated with Rao-Stirling diversity, entropy-based novelty measures, and NLP-derived functional citation weights. We validate BKII empirically on a representative sample of 10,000 publications from OpenAlex, demonstrating its superior ability to predict prestigious awards such as Nobel Prizes and Fields Medals with an ROC AUC of 0.89, compared to 0.80 for the h-index. Retrospective analyses on 50 Nobel laureates in Physics versus 50 matched non-laureates confirm BKII's enhanced discrimination. Through Monte Carlo simulations, agent-based modeling, sensitivity analyses, and comparisons with established metrics (h-index, g-index, i10-index, h5-index, CNCI, m-index, disruption index, innovation index, EDM, RCR) and MCMC implementations (Stan, PyMC, JAGS), we demonstrate BKII's superior robustness and predictive accuracy under various stress scenarios. The framework provides credible intervals, anomaly detection for citation cartels, and field-normalized scores, offering a reproducible tool for academic evaluations, funding decisions, and policy-making. Code and data processing scripts are available on GitHub for community verification. No external funding was received.
DOI: 10.15468/dl.datn9f
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies fraseri",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is United States of America",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 68 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003891-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qv9s4mwnm
title: Data from: The genetic architecture of dewlap pattern in Hispaniola Anoles (Anolis distichus)

description: Color and pattern are often critical to survival and fitness, but we know
 little about their genetic architecture and heritability in groups like
 reptiles. We investigated the genetic architecture for the pattern of the
 dewlap –  an extensible throat fan important for communication –
 in anole lizards. We studied the Hispaniolan bark anole (Anolis distichus)
 – a species that exhibits impressive intraspecific dewlap polymorphism
 across its range – by conducting multi-generational experimental crosses
 with two populations, one with a solid pale yellow dewlap and another with
 an orange dewlap surrounded by a yellow margin. Upon rejecting the
 hypothesis that the extent of the orange pattern is a quantitative trait
 resulting from many loci of minor effect, we used a maximum likelihood
 model-fitting framework to show that it is better explained as a simple
 Mendelian trait, with the solid yellow morph being dominant over the blush
 orange. The relatively simple genetic architecture underlying this
 important trait helps explain the complex distribution of dewlap color
 variation across the rage of A. distichus and suggests that changes in
 dewlap color and pattern may evolve rapidly in response to natural
 selection.
description: # **Data from: The Genetic Architecture of Dewlap Pattern in Hispaniola
 Anoles (*Anolis distichus*)**
 [https://doi.org/10.5061/dryad.qv9s4mwnm](https://doi.org/10.5061/dryad.qv9s4mwnm) ### Supplemental Data Supplemental data includes a spreadsheet with the raw data of the proportion orange dewlap area for each anole image and transformed data. Each generation is described as follows: P ign: Wild caught *Anolis distichus ignigularis* which were representatives of the parental population P rav: Wild caught *Anolis distichus ravitergum* which were representatives of the parental population F1: Hybrids of the two species reared in lab F2: Hybrids of the F1 population BC1: Backcross between F1 individuals and *A. d. ravitergum* BC2: Backcross between F1 individuals and *A. d. ignigularis* Column headings for the spreadsheet are defined as: BC 1: The number assigned to the BC1 individual Label: Image label for the individual Dewlap Area: Measured area of the dewlap (cm^2) Tweezer Area: Measured area of the tweezer (cm^2) Total Area: Combined area of the dewlap plus the tweezer area (cm^2) Orange Area: Area of the dewlap that was orange in color (cm^2) Percent Orange: Percent of the dewlap that is orange calculated by dividing the Orange Area by the Total area Transformed: The transformed value of the Percent Orange calculated by doing an arcsin sqrt transformation Additionally, the labels in red under P ign are to illustrate that they had very large proportions of orange dewlaps. ### Code The following R scripts were used to generate graphs shown in the methods. ANOVA analysis is also included.
DOI: 10.5061/dryad.83bk3jb0n
title: Data from: Phylogenetic relationships of Brachistus and Witheringia (Solanaceae)

description: The neotropical physaloid genera Witheringia and Brachistus have long been
 subject to taxonomic confusion.  We obtained tissue from
 well-documented species of these genera, including multiple accessions
 from widespread taxa, to generate a molecular systematic framework. We
 present Bayesian phylogenies based on sequences of one chloroplast
 (trnL-trnF) and two nuclear loci (ITS and waxy).  The major
 findings are that: 1) Witheringia and Brachistus together form a
 well-supported monophyletic group, 2) Brachistus is nested within
 Witheringia, 3) two Mexican endemic species represent the earliest
 diverging lineages of the clade, 4) several proposed synonyms represent
 distinct species, and 5) sequenced accessions include several new species
 awaiting description. The four currently recognized species
 of Brachistus are transferred to Witheringia, necessitating the
 new combination Witheringia knappiae (Mont.-Castro & Sousa-Peña)
 Bohs, comb. nov., and Athenaea affinis C.V. Morton is lectotypified. A
 list is also provided for names now excluded from Brachistus and
 recognized as belonging to other genera.
description: DNA was extracted from 31 ingroup accessions, with 29 of these
 collected by the authors. Ingroup sequences were obtained by Sanger
 sequencing at three loci: ITS, waxy, and trnL-F.  Sequences for eight
 outgroup taxa were procured from GenBank. Sequences were aligned using
 Geneious and adjusted by eye.
description: # Data from: Phylogenetic relationships of Brachistus and Witheringia
 (Solanaceae) The data
 consists of Nexus files containing aligned DNA sequences for 31 accessions
 of plants from the genera Witheringia and Brachistus, together with eight
 outgroup taxa, all in the Solanaceae. Four files are provided: one for
 each of the three loci, and one containing the three loci combined. To
 produce the overall phylogenetic tree, alignments for each of the three
 loci were combined and treated as separate partitions. The combined data
 matrix contains 3640 aligned characters: 649 for ITS, 1775 for *waxy*, and
 1216 for trnL-F. A "character" in this context is a nucleotide
 base or a gap inserted to maintain alignment of sequences. ## Description
 of the data and file structure The data are in executable files adhering
 to Nexus file structure. Briefly, the files include information on the
 number of taxa, names of taxa, number of characters, and the data matrix.
 The combined data set includes information on the three partitions for the
 three different loci, with ITS spanning positions 1-649, waxy 650-2424,
 and trn 2425-3640. ## Sharing/Access information Sequence data has been
 posted on Genbank. *
DOI: 10.3886/e224781v1-198178
title: Data and Code for: Across-Country Wage Compression in Multinationals

description: This is the replication package for "Across-Country Wage Compression in Multinationals" by Hjort, Li, and Sarsons
DOI: 10.5061/dryad.f4qrfj736
title: Data from: Ocean circulation contributes to genetic connectivity of limpet populations at deep-sea hydrothermal vents in a back-arc basin

description: For endemic benthos inhabiting hydrothermal vent fields, larval
 recruitment is critical for population maintenance and colonization via
 migration among separated sites. The vent-endemic limpet, Lepetodrilus
 nux, is abundant at deep-sea hydrothermal vents in the Okinawa Trough, a
 back-arc basin in the northwestern Pacific; nonetheless, it is endangered
 due to deep-sea mining. This species is associated with many other vent
 species and is an important successor in these vent ecosystems. However,
 limpet genetic diversity and connectivity among local populations have not
 yet been examined. We conducted a population genetics study of L. nux at
 five hydrothermal vent fields (maximum geographic distance, ~545 km;
 depths ~700 m to ~1650 m) using 14 polymorphic microsatellite loci
 previously developed. Genetic diversity has been maintained among these
 populations. Meanwhile, fine population genetic structure was detected
 between distant populations, even within this back-ark basin, reflecting
 geographic distances between vent fields. There was a significant,
 positive correlation between genetic differentiation and geographic
 distance, but no correlation with depth. Contrary to dispersal patterns
 predicted by an ocean circulation model, genetic migration is not
 necessarily unidirectional, based on relative migration rates. While ocean
 circulation contributes to dispersal of L. nux among vent fields
 in the Okinawa Trough, genetic connectivity may be maintained by complex,
 bidirectional dispersal processes over multiple generations.
description: # Data from: Ocean circulation contributes to genetic connectivity of
 limpet populations at deep-sea hydrothermal vents in a back-arc basin
 [https://doi.org/10.5061/dryad.f4qrfj736](https://doi.org/10.5061/dryad.f4qrfj736) ## Description of the data and file structure ### Files and variables #### File: Microsatellite\_genotypes\_for\_Lepetodrilus\_nux.xlsx *Lepetodrilus nux* microsatellite genotypic data, 14 loci, 158 individuals from five sites in the Okinawa Trough.
DOI: 10.15468/dl.9ry2sq
title: Occurrence Download

description: A dataset containing 1269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.34_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus pensylvanicus",
 "Year 2022-2026"
 ]
}

 The dataset includes 1269 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003893-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14655122
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.77fdn5
title: Occurrence Download

description: A dataset containing 195414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachurus trachurus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 195414 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003863-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18405909
title: Table 1 in Reproduction of the Brazilian snapper, Lutjanus alexandrei Moura & Lindeman, 2007 (Perciformes: Lutjanidae), off the northern coast of Pernambuco, Brazil

description: Table 1. Maturity development gonad stage (males and females) for the Brazilian snapper Lutjanus alexandrei. Data in parentheses represent the range of values for the gonad weight and gonadosomatic index.
Maturity StagesMicroscopic characteristic of testisMicroscopic characteristic of ovariesImmatureSpermatocytes in early leptotenic, zygotenic and pactenic phases (0.1 - 1 g, GSI = 0.01- 0.42)Abundance of previtellogenic oocytes, no yolked oocytes and no atresia. (0.1 - 1 g, GSI = 0.1 - 0.45)MaturingSpermatocytes in metaphase I e II. Abundance of spermatids and some rare spermatozoans (1.0 - 2.7 g, GSI = 1.0 - 1.5)Vitellogenic oocytes present and high abundance of previtellogenic oocytes, no hydrated oocytes. (1.0 - 3.0 g, GSI = 1.0 - 1,7)MatureAll spermatids phase and high presence of spermatozoans. (3.0 - 6.8 g, GSI= 1.8 - 2.2)All major of oocytes in protein and lipid vitellogenesis, and rare hydrated oocytes. (3.0 - 7.4 g, GSI = 1.8 - 2.2)SpawningEmptying of spermatogenic and still have many spermatozoans. (7.0 - 12.3 g, GSI = 2.0 - 2.5)Hydrated oocytes and rare newly post-ovulatory follicles. (8.0 - 19.4 g, GSI = 2.0 - 2.7)SpawnedRare of spermatozoans in vas deferens. (6.1 - 7.2 g, GSI = 1.0 - 1.4)POF abundance; little hydrated oocytes. (6.7 - 9.4 g, GSI = 1.4 - 1.9)RestingDisorganization in spermatogenics tubules and may empty spaces between them. (0.9 - 1.3 g, GSI = 0.5 - 0.92)α- atresia and β- atresia, no vitellogenic oocytes. Previtellogenic oocytes abundance in atresia. (1.0 - 1.6 g, GSI = 0.5 - 0.96)
description: Published as part of Fernandes, Cezar A. F., de Oliveira, Paulo G. V., Travassos, Paulo E. P. & Hazin, Fábio H. V., 2012, Reproduction of the Brazilian snapper, Lutjanus alexandrei Moura & Lindeman, 2007 (Perciformes: Lutjanidae), off the northern coast of Pernambuco, Brazil, pp. 588 in Neotropical Ichthyology 10 (3) on page 588, DOI: 10.1590/s1679-62252012005000022, http://zenodo.org/record/18405840
DOI: 10.5281/zenodo.18405908
title: Table 1 in Reproduction of the Brazilian snapper, Lutjanus alexandrei Moura & Lindeman, 2007 (Perciformes: Lutjanidae), off the northern coast of Pernambuco, Brazil

description: Table 1. Maturity development gonad stage (males and females) for the Brazilian snapper Lutjanus alexandrei. Data in parentheses represent the range of values for the gonad weight and gonadosomatic index.
Maturity StagesMicroscopic characteristic of testisMicroscopic characteristic of ovariesImmatureSpermatocytes in early leptotenic, zygotenic and pactenic phases (0.1 - 1 g, GSI = 0.01- 0.42)Abundance of previtellogenic oocytes, no yolked oocytes and no atresia. (0.1 - 1 g, GSI = 0.1 - 0.45)MaturingSpermatocytes in metaphase I e II. Abundance of spermatids and some rare spermatozoans (1.0 - 2.7 g, GSI = 1.0 - 1.5)Vitellogenic oocytes present and high abundance of previtellogenic oocytes, no hydrated oocytes. (1.0 - 3.0 g, GSI = 1.0 - 1,7)MatureAll spermatids phase and high presence of spermatozoans. (3.0 - 6.8 g, GSI= 1.8 - 2.2)All major of oocytes in protein and lipid vitellogenesis, and rare hydrated oocytes. (3.0 - 7.4 g, GSI = 1.8 - 2.2)SpawningEmptying of spermatogenic and still have many spermatozoans. (7.0 - 12.3 g, GSI = 2.0 - 2.5)Hydrated oocytes and rare newly post-ovulatory follicles. (8.0 - 19.4 g, GSI = 2.0 - 2.7)SpawnedRare of spermatozoans in vas deferens. (6.1 - 7.2 g, GSI = 1.0 - 1.4)POF abundance; little hydrated oocytes. (6.7 - 9.4 g, GSI = 1.4 - 1.9)RestingDisorganization in spermatogenics tubules and may empty spaces between them. (0.9 - 1.3 g, GSI = 0.5 - 0.92)α- atresia and β- atresia, no vitellogenic oocytes. Previtellogenic oocytes abundance in atresia. (1.0 - 1.6 g, GSI = 0.5 - 0.96)
description: Published as part of Fernandes, Cezar A. F., de Oliveira, Paulo G. V., Travassos, Paulo E. P. & Hazin, Fábio H. V., 2012, Reproduction of the Brazilian snapper, Lutjanus alexandrei Moura & Lindeman, 2007 (Perciformes: Lutjanidae), off the northern coast of Pernambuco, Brazil, pp. 588 in Neotropical Ichthyology 10 (3) on page 588, DOI: 10.1590/s1679-62252012005000022, http://zenodo.org/record/18405840
DOI: 10.5061/dryad.vhhmgqp22
title: Data from: The recumbirostran <em>Hapsidopareion lepton</em> from the Early Permian of Oklahoma reassessed through HRμCT and the effects of fossoriality on the neurocranium of Pan-Amniota

description: Recumbirostra is a clade of heavily-modified, superficially lizard-like
 tetrapods that were originally interpreted as ‘microsaurian lepospondyls’
 unrelated to the amniote crown. However, recent work has placed
 Recumbirostra within Reptilia, based on many similarities between the
 braincase and postcranium of recumbirostrans with early reptiles. Here,
 the Early Permian hapsidopareiid recumbirostran Hapsidopareion lepton is
 re-described using high-resolution microCT data of three individuals,
 including the holotype specimen. The neurocranium of Hapsidoparieon is
 described for the first time, that is heavily integrated with the skull
 roof, suggesting a fossorial lifestyle in this taxon. These scans reveal a
 suite of surprising plesiomorphies of the braincase and skull roof of
 Hapsidoparieon that are present in recumbirostrans and early stem-amniotes
 but lacking in unambiguous amniotes, including; the presence of a paired
 supraoccipital and a broad contact between the otic capsules and skull
 roof. These results suggest that features previously uniting
 recumbirostrans with reptiles are symplesiomorphies of Amniota, and a new
 phylogenetic analysis places Recumbirostra as a crownward group along the
 amniote stem. Our findings highlight the need for further anatomical and
 descriptive studies of both stem-and crown-group amniotes, and
 specifically the need for further revisions to those taxa originally
 conceptualized as ‘microsaurs’. 
description: This phylogenetic matrix is a modified version of Mann et al.
 (2023) on recumbirostran relationships, with additional characters and
 taxa (notably amniotes) added to the matrix. 
description: # Jenkins et al. Hapsidopareion phylogeny
 [https://doi.org/10.5061/dryad.vhhmgqp22](https://doi.org/10.5061/dryad.vhhmgqp22) Nexus-readable phylogenetic matrix associated with Jenkins et al. (in review) description of *Hapsidopareion* with additional taxa and morphological characters added. ## Description of the data and file structure Nexus-readable phylogenetic matrix.
DOI: 10.15468/dl.tgpk3x
title: Occurrence Download

description: A dataset containing 3265984 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad asociada a principales pesquerías de recursos pelágicos del Programa Asesoría Integral para la Toma de Decisiones en Pesca y Acuicultura, Subsecretaria de Pesca y Acuicultura"
 ]
}

 The dataset includes 3265984 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003883-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15854961
title: Data and R code for "Do antimicrobial substances impact brown food webs bottom-up? A proof of concept with ciprofloxacin and azoxystrobin"

description: This repository contains the data and R scripts associated with the manuscript "Do antimicrobial substances impact food webs bottom-up? A proof of concept with ciprofloxacin and azoxystrobin" by Meyer et al. (submitted to Environmental Toxicology & Chemistry).

The archive includes:





qPCR data: Bacterial and fungal DNA abundances for both azoxystrobin and ciprofloxacin exposures (in .xlsx format).




Community composition: Raw and processed macroinvertebrate community data (species and functional feeding groups) from mesocosm experiments.




Analytical data: Concentration measurements of antimicrobial substances.




Stream and treatment metadata: Channel-level treatment information (stream_info.csv).




R scripts (in /code/): Full analysis pipeline, including:





00_setup.R: Package loading and environment setup




01_community.R: Community composition analysis (NMDS, PERMANOVA, SIMPER)




02_qPCR.R: Analysis of microbial abundance (ANOVA, linear modeling)






Figures: Output NMDS plots and visualizations (in /figures/).



All statistical analyses were conducted in R using vegan, tidyverse, and related packages. An aqua-co-reg_WP1.Rproj file is provided to facilitate project loading in RStudio.
DOI: 10.5281/zenodo.15854960
title: Data and R code for "Do antimicrobial substances impact brown food webs bottom-up? A proof of concept with ciprofloxacin and azoxystrobin"

description: This repository contains the data and R scripts associated with the manuscript "Do antimicrobial substances impact food webs bottom-up? A proof of concept with ciprofloxacin and azoxystrobin" by Meyer et al. (submitted to Environmental Toxicology & Chemistry).

The archive includes:





qPCR data: Bacterial and fungal DNA abundances for both azoxystrobin and ciprofloxacin exposures (in .xlsx format).




Community composition: Raw and processed macroinvertebrate community data (species and functional feeding groups) from mesocosm experiments.




Analytical data: Concentration measurements of antimicrobial substances.




Stream and treatment metadata: Channel-level treatment information (stream_info.csv).




R scripts (in /code/): Full analysis pipeline, including:





00_setup.R: Package loading and environment setup




01_community.R: Community composition analysis (NMDS, PERMANOVA, SIMPER)




02_qPCR.R: Analysis of microbial abundance (ANOVA, linear modeling)






Figures: Output NMDS plots and visualizations (in /figures/).



All statistical analyses were conducted in R using vegan, tidyverse, and related packages. An aqua-co-reg_WP1.Rproj file is provided to facilitate project loading in RStudio.