cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c54f1mn6g
title: MassIVE Reanalysis RMSV000000397.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088434 LOPIT-DC subcellular map of U-2 OS cells [BioReplicate: REP1_SET2] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.5718844
title: Chromatograms: Rapid multilocus adaptation of clonal cabbage leaf curl virus populations to Arabidopsis thaliana

description: Sei-0 and Col-0 <em>Arabidopsis thaliana </em>plants were inoculated with WT and mutant cabbage leaf curl virus and PCR amplicons targeting the Rep gene region were Sanger-sequenced, as documented (Hoyer et al. 2022).
DOI: 10.25345/c50p0wv2b
title: MassIVE Reanalysis RMSV000000514.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080700/PXD000901 [1 out of 3] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5vx0666n
title: MassIVE Reanalysis RMSV000000362.95 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, AspN CID [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5r49gd1s
title: MassIVE Reanalysis RMSV000000443.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080834/PXD001115 [5 out of 5] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5mc8rk71
title: MassIVE Reanalysis RMSV000000451.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083957 Enrichment strategy for searching missing protein, ubiquitome CID, 2 PTMs/peptide [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5gq6r58k
title: MassIVE Reanalysis RMSV000000406.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080275/PXD001977 [4 out of 4] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5bz61c59
title: MassIVE Reanalysis RMSV000000366.55 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086387 A Quantitative Proteome Map of the Human Body, TMT10 MS3 [Mixture: 52] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57659k1g
title: MassIVE Reanalysis RMSV000000582.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080856/PXD002650 [4 out of 4] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c53f4kr7q
title: MassIVE Reanalysis RMSV000000437.8 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088406 Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimers Disease Progression - angular gyrus [Cohort: Alzheimers_Cohort1_Soluble_Trypsin] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.3886/e128662
title: Comment on “Re-Examining the Contribution of Public Health Efforts to the Decline in Urban Mortality”

description: <br> We address points raised by Anderson et al. (2020), which commented on our prior work. After correcting unambiguous data mistakes, our revised estimates suggest that municipal water disinfection (filtration) explains 38% of the total mortality rate decline in our sample cities and years – a result not very different from our 43% original estimate. However, effects on infant mortality rates are smaller than in our original analysis. Much of the difference between ACR’s analyses and ours is due to the coding of partial intervention years and to differences in population denominators, for which ideal data are difficult to find. <br>
DOI: 10.3886/e128662v1
title: Comment on “Re-Examining the Contribution of Public Health Efforts to the Decline in Urban Mortality”

description: <br> We address points raised by Anderson et al. (2020), which commented on our prior work. After correcting unambiguous data mistakes, our revised estimates suggest that municipal water disinfection (filtration) explains 38% of the total mortality rate decline in our sample cities and years – a result not very different from our 43% original estimate. However, effects on infant mortality rates are smaller than in our original analysis. Much of the difference between ACR’s analyses and ours is due to the coding of partial intervention years and to differences in population denominators, for which ideal data are difficult to find. <br>
DOI: 10.25345/c5zp3w418
title: MassIVE Reanalysis RMSV000000560.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088407 Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimers Disease Progression - frontal gyrus [Cohort: Non-Alzheimers_insoluble] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5255/ukda-sn-855483
title: Periods in a Pandemic UK Data, 2020-2021

description: This data was generated as part of an 18 month ESRC funded project,as part of UKRI’s rapid response to COVID-19. The project examines how UK period poverty initiatives mitigated Covid-19 challenges in light of lockdown measures and closure of services, and how they continued to meet the needs of those experiencing period poverty across the UK. Applied social science research methodologies were utilised to collect and analyse data as this project, about the Covid-19 pandemic, was undertaken during an ongoing ‘real world’ pandemic. Data collection was divided into two phases. Phase 1 (October 2020 – February 2021) collected data from period poverty organisations in the UK using semi-structured interviews and an online survey to develop an in-depth understanding of how period poverty organisations were responding to and navigating the Covid-19 Pandemic. Having collected and analysed this data, phase 2 (June – September 2021) used an online survey to collect data from people experiencing period poverty in order to better understand their lived experiences during the pandemic. Our dataset comprises of phase 1 interview transcripts and online survey responses, and phase 2 online survey responses.
DOI: 10.25345/c5tx3597w
title: MassIVE Reanalysis RMSV000000366.56 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086387 A Quantitative Proteome Map of the Human Body, TMT10 MS3 [Mixture: 4] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.17632/zmxmp42g9p.2
title: Demographic, exposure, clinical, biochemical and diagnostic data of febrile patients recruited for the largest field study on leptospirosis in Sri Lanka

description: This dataset includes data from febrile patients recruited for a large hospital-based study in Sri Lanka from 2016 to 2019. The variables include primary socio-demographic data, exposure data, clinical data, biochemical and investigation data. Some of these data are available as serial data from admission to discharge daily. Microscopic agglutination test, quantitative PCR of whole blood, urine and serum e and blood for culture were performed to diagnose the patients with leptospirosis.
DOI: 10.25345/c5q52fh32
title: MassIVE Reanalysis RMSV000000379.6 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088405 Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimers Disease Progression - high/low molecular weight tau [Cohort: Alzheimers_Low-MW_Tau] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5kh0f315
title: MassIVE Reanalysis RMSV000000398.19 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086899 SubCellBarcode Scalable proteome-wide mapping of protein localization and relocalization [BioReplicate: Subcell_MVYB_HCC827_gef_QE1_20160607_TMT10_IPG3-10_7of15ul] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fq9q88b
title: MassIVE Reanalysis RMSV000000384.23 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081563 HeLa proteome, Tissue_Colon_46_fractions [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c56688p0r
title: MassIVE Reanalysis RMSV000000592.38 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, esophagus Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c59z90g4k
title: MassIVE Reanalysis RMSV000000436.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080865/PXD001203 [5 out of 9] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19372868
title: Integrated_dataset.Robj

description: The integrated dataset (Figure 1) from Marsh et al., 2022. This is a R object containing all cells, clustering, and metadata for all cells from the integration of matching samples from the villous and smooth chorions from four human placenta samples. More detail can be found in the manuscript.
DOI: 10.25345/c52f7jv5h
title: MassIVE Reanalysis RMSV000000398.20 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000086899 SubCellBarcode Scalable proteome-wide mapping of protein localization and relocalization [BioReplicate: MVYB_Subcell_HCC827_Re4-2_HF_20160904_TMT_IPG3-10_7of15ul] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5xp6v70j
title: MassIVE Reanalysis RMSV000000592.39 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, gallbladder Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.34848/fk2/6qglct/x3hvwx
title: DTU_Base.tab

description: :unav
DOI: 10.34848/fk2/6qglct/vkwjlw
title: Final_Base.tab

description: :unav
DOI: 10.34848/fk2/6qglct/c6lu64
title: Final_database.csv

description: :unav
DOI: 10.34848/fk2/6qglct/c3cj8a
title: method categorized.tab

description: :unav
DOI: 10.34848/fk2/6qglct/1uvhhc
title: Hosts.tab

description: :unav
DOI: 10.34848/fk2/6qglct/zib1cy
title: methods count.tab

description: :unav
DOI: 10.34848/fk2/6qglct/ysw4t7
title: genes.tab

description: :unav
DOI: 10.34848/fk2/6qglct/jrxb0u
title: Database_onlyforDTUs_1.csv

description: :unav
DOI: 10.34848/fk2/6qglct/acwucl
title: Vectors.tab

description: :unav
DOI: 10.34848/fk2/6qglct/juuuvl
title: database_final_edited_210322.csv

description: :unav
DOI: 10.17632/hjpx4gh9fs.1
title: Normative values of upper limb non-equilibrium coordination tests among adolescents

description: A cross-sectional study, recruiting 65 children of age group 12-17 years with convenient sampling to perform non-equilibrium coordination tests. Participants were asked to perform all tests one by one and the time taken (in seconds) was noted. The mean of three readings was obtained using a mobile based stop-watch. The normative reference values of finger to finger, finger to therapist finger, finger opposition, finger to nose and alternate nose to therapist finger comes out to be 2.28±0.65 seconds, 1.98±0.50 seconds, 2.14±0.52 seconds, 2.19 (2.12-2.41) seconds and 2.21 (2.14-2.44) seconds respectively.
DOI: 10.25345/c5sx64d7n
title: MassIVE Reanalysis RMSV000000583.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083973 Proteogenomics reanalysis of human testis data, regular SDS-PAGE files [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5p84404k
title: MassIVE Reanalysis RMSV000000424.20 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088398 Proteomic Atlas of the Human Brain in Alzheimers Disease [Cohort: Entorhinal_cortex, Condition: Alzheimers] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19372532
title: Stroma_subset.Robj

description: The stromal cell subset (Figure 1) from Marsh et al., 2022. This is a R object containing all cells, clustering, and metadata for the stromal cell subset of the integrated dataset. This contains stromal cells isolated from human second trimester villous and smooth chorion samples. More detail can be found in the manuscript.
DOI: 10.6084/m9.figshare.19372514
title: Immune_subset.Robj

description: The Immune cell subset (Figure 1) from Marsh et al., 2022. This is a R object containing all cells, clustering, and metadata for the immune cell subset of the integrated dataset. This contains immune cells isolated from human second trimester villous and smooth chorion samples. More detail can be found in the manuscript.
DOI: 10.6084/m9.figshare.19372466
title: Trophoblast_Subset.Robj

description: The trophoblast subset (Figures 2-6) from Marsh et al., 2022. This is a R object containing all cells, clustering, and metadata for the trophoblast subset of the integrated dataset. This contains trophoblast isolated from human second trimester villous and smooth chorion samples. More detail can be found in the manuscript.
DOI: 10.17632/9h73zb2pn5.1
title: Antarctic aerosol dicarboxylic acid data

description: Statistical summary of concentrations (ng m-3) of dicarboxylic acids, oxoacids, and α-dicarbonyls with major inorganic and organic species (µg m-3) between the high-altitude tropospheric aerosol (HTAs) and low-altitude tropospheric aerosols (LTAs) in PM10 aerosols collected at Bharati station in the Antarctic during summer of 2017. The unpaired t-test statistical analysis was performed to examine whether or not the difference between two air masses is statistically significant at 95% confidence level (p<0.05).