cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3737795
title: Confocal microscopy image stacks from "Temporal integration of auxin information for the regulation of patterning"

description: This dataset contains raw images in CZI format (Zeiss) of shoot apical meristems (SAM) from <em>Arabidopsis thaliana </em>transgenic lines <strong>qDII-pCLV3-pDR5</strong> or <strong>qDII-pCLV3-PIN1</strong>. See <em>(Galvan-Ampudia and Cerutti et al.) </em>for detailed information. This data constitutes the input of the <strong>sam_spaghetti</strong> pipeline (https://gitlab.inria.fr/mosaic/publications/sam_spaghetti) and can be processed using the scripts and examples provided in the package. <strong>File information:</strong> File names containing qDII-CLV3-DR5 have the following data: Channel 1: <em>DII-VENUS-N7</em> Channel 2: <em>pDR5:2xmTurquoise2</em> Channel 3: <em>pRPS5a:TagBFP-SV40</em> Channel 4: <em>pCLV3:mCherry-N7</em> File names containing qDII-CLV3-PIN1-PI have the following data: Channel 1: <em>DII-VENUS-N7</em> Channel 2: <em>pPIN1:PIN1-GFP</em> Channel 3: <em>Propidium Iodide (cell walls)</em> Channel 4: <em>pRPS5a:TagBFP-SV40</em> Channel 5: <em>pCLV3:mCherry-N7</em> Time-lapse sequences are identified as follows: <strong>qDII-CLV3-DR5-E27-LD-SAM7.czi</strong> <strong>qDII-CLV3-DR5-E27-LD-SAM7-T5.czi</strong> <strong>qDII-CLV3-DR5-E27-LD-SAM7-T10.czi</strong> where: <strong>qDII-CLV3-DR5</strong> indicates the line <strong>E$$-LD</strong> (e.g. E25-LD, E27-LD, etc) indicates independent biological replicas <strong>SAM$</strong> is the meristem (technical replica) <strong>T$</strong> indicates the time elapsed after the first image (in hours) For example <strong>qDII-CLV3-DR5-E27-LD-SAM7-T5.czi</strong> is an image of the 7th SAM of the set E27, acquired 5 hours after the first image.
DOI: 10.5281/zenodo.3735708
title: 2000 AU-scale cores identified by dendrogram in three massive clouds in the CMZ

description: The full catalog of the 2000 AU-scale cores identified by dendrogram in three massive clouds in the CMZ. Paper will be submitted to AAS journals.
DOI: 10.5281/zenodo.3738612
title: IO Islamic 3244. Ta'rîkh-i-Panjâb, History of the Panjâb

description: IO Islamic 3244. Ta’rîkh-i-Panjâb, History of the Panjâb
DOI: 10.5281/zenodo.3738611
title: IO Islamic 3244. Ta'rîkh-i-Panjâb, History of the Panjâb

description: IO Islamic 3244. Ta’rîkh-i-Panjâb, History of the Panjâb
DOI: 10.5281/zenodo.3738546
title: Data set for Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types

description: Dataset used in the publication: " Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types". The dataset gathers estimates of ecosystem standing stocks (biomass, organic carbon, detritus), fluxes (GPP, ER, NEP) and process rates (decomposition and carbon uptake rates) for eight broad ecosystem types (forest, grassland, agroecosystem, desert, stream, lake, pelagic and benthic marine ecosystems) in five broad climatic zones (arctic, boreal, arid, temperate, tropical, arid). The scripts to produce the figures and the statistics of the publication are released along with the txt version of the data, which file is uploaded when running the script.
DOI: 10.5281/zenodo.3738136
title: Modern Fortran Survey 2019 Raw Data

description: We've organized an online survey about usage of Modern Fortran features (2003/2008 standard) on https://modernfortran.limequery.org The survey was online from June 2019 to March 2020 and includes 140 complete responses and 85 incomplete. This package contains the raw data and the automatically generated statistics from it: html-forms.zip .. the survey exported as a static HTML page (the original survey hid subquestions based on previous answers) limesurvey-archive.lsa .. the complete survey (including the results) in LimeSurvey archive format (ZIP file with proprietary files) printed-forms.pdf .. the survey as PDF results-{all,complete-only,incomplete-only}.pdf .. the automatically generated statistics of the survey results including plots. "all": include all surveys, "complete-only": only surveys which were completed, "incomplete-only": only surveys which were not completed results-{complete,incomplete}_only.csv .. the results in CSV format for the respective subsets
DOI: 10.5281/zenodo.3738137
title: Modern Fortran Survey 2019 Raw Data

description: We've organized an online survey about usage of Modern Fortran features (2003/2008 standard) on https://modernfortran.limequery.org The survey was online from June 2019 to March 2020 and includes 140 complete responses and 85 incomplete. This package contains the raw data and the automatically generated statistics from it: html-forms.zip .. the survey exported as a static HTML page (the original survey hid subquestions based on previous answers) limesurvey-archive.lsa .. the complete survey (including the results) in LimeSurvey archive format (ZIP file with proprietary files) printed-forms.pdf .. the survey as PDF results-{all,complete-only,incomplete-only}.pdf .. the automatically generated statistics of the survey results including plots. "all": include all surveys, "complete-only": only surveys which were completed, "incomplete-only": only surveys which were not completed results-{complete,incomplete}_only.csv .. the results in CSV format for the respective subsets
DOI: 10.5281/zenodo.3738685
title: Partnerships with TNCs to Better Serve the Transportation Disadvantaged Populations Data Repository

description: Data repository for the STRIDE project A2 "Changing Access to Public Transportation and the Potential for Increased Travel," Thrust 2---Access for Transportation Disadvantaged Populations.
DOI: 10.5281/zenodo.3738686
title: Partnerships with TNCs to Better Serve the Transportation Disadvantaged Populations Data Repository

description: Data repository for the STRIDE project A2 "Changing Access to Public Transportation and the Potential for Increased Travel," Thrust 2---Access for Transportation Disadvantaged Populations.
DOI: 10.15468/l9uljs
title: Annotated checklist of Afrotropical Trogolaphysa Mills, 1938 (Hexapoda: Collembola: Paronellidae) and description of a new species from Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Minh, Soto-Adames, Felipe N. (2018): Annotated checklist of Afrotropical Trogolaphysa Mills, 1938 (Hexapoda: Collembola: Paronellidae) and description of a new species from Madagascar. Zoosystema 40 (10): 179-196, DOI: 10.5252/zoosystema2018v40a10
DOI: 10.5281/zenodo.3738680
title: OTUs sequences

description: The file corresponds to sequences from 407 OTUs obtained from 16 Anopheles abdomens.
DOI: 10.5281/zenodo.3738681
title: OTUs sequences

description: The file corresponds to sequences from 407 OTUs obtained from 16 Anopheles abdomens.
DOI: 10.15468/sv8plz
title: Hanging on - lucinid bivalve survivors from the Paleocene and Eocene in the western Indian Ocean (Bivalvia: Lucinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Taylor, John D., Glover, Emily A. (2018): Hanging on - lucinid bivalve survivors from the Paleocene and Eocene in the western Indian Ocean (Bivalvia: Lucinidae). Zoosystema 40 (7): 123-142, DOI: 10.5252/zoosystema2018v40a7
DOI: 10.15784/601269
title: Dissolved nutrient profiles from along 170°W between 67 and 54°S

description: This dataset contains the water column profiles of dissolved nutrients, NO3, PO4, dissolved Si, biogenic Si, lithogenic Si, chlorophyll and phaeophytin concentrations, and the d15NO3.
DOI: 10.15468/20qzuy
title: Cicadetta sibillae Hertach & Trilar, 2015, nouvelle espèce de cigale pour la France (Hemiptera, Cicadidae) et premières analyses des sons complexes émis durant la cymbalisation d’appel nuptial

description: This dataset contains the digitized treatments in Plazi based on the original journal article Puissant, Stéphane, Gurcel, Kevin (2018): Cicadetta sibillae Hertach & Trilar, 2015, nouvelle espèce de cigale pour la France (Hemiptera, Cicadidae) et premières analyses des sons complexes émis durant la cymbalisation d’appel nuptial. Zoosystema 40 (8): 143-158, DOI: 10.5252/zoosystema2018v40a8
DOI: 10.15468/c9wir3
title: Squalus rancureli Fourmanoir, 1979, a new junior synonym of the blacktailed spurdog S. melanurus Fourmanoir, 1979, and updated diagnosis of S. bucephalus Last, Séret & Pogonoski, 2007 from New Caledonia (Squaliformes, Squalidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Viana, Sarah T. F. L., De Carvalho, Marcelo R. (2018): Squalus rancureli Fourmanoir, 1979, a new junior synonym of the blacktailed spurdog S. melanurus Fourmanoir, 1979, and updated diagnosis of S. bucephalus Last, Séret & Pogonoski, 2007 from New Caledonia (Squaliformes, Squalidae). Zoosystema 40 (9): 159-177, DOI: 10.5252/zoosystema2018v40a9
DOI: 10.5519/qd.rwbgeikp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4542247 records)
DOI: 10.5281/zenodo.3738458
title: COVID-19 Concept Embeddings

description: Up-to-date information and pre-trained embeddings can be found here. In order to support NLP research efforts related to COVID-19, we have developed resources for training vector-valued embeddings of COVID-19 related medical concepts, primarily using the CORD-19 dataset. This resource includes only concept embeddings. Download of the full sets of concept, term, and word embeddings from here requires a valid UMLS Terminology Services account, in order to validate licensed access to SNOMED-CT.
DOI: 10.15139/s3/swnwjg
title: Utilization of No Tobacco Sale Orders against Retailers that Repeatedly Sell to Minors, 2015-2019

description: This dataset contains documentation from an assessment of Food and Drug Administration compliance check and enforcement data. We sought to assess the FDA's utilization of no tobacco sale orders (NTSOs).
DOI: 10.7910/dvn/0pd4jm/9zrkhf
title: nl-covid-19_02042020.tar.gz

description: April 2, 2020
DOI: 10.15468/rctxpj
title: On the Staphylinidae of the Greek island Samothraki (Insecta Coleoptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, Volker (2019): On the Staphylinidae of the Greek island Samothraki (Insecta Coleoptera). Linzer biol. Beitr. 51 (2): 881-906, DOI: http://doi.org/10.5281/zenodo.3738343
DOI: 10.25919/5e862f8db8341
title: Parkes observations for project P1008 semester 2019OCTS_02

description: Magnetic field measurements of the Solar wind (SW) are extremely challenging, especially at close angular distances from the Sun. If they are obtained by measuring Faraday rotation of the radiation of background sources like active galactic nuclei, they are typically dependent on models of the electron density distribution in the heliosphere. However, pulsars can provide simultaneous, model-independent measurements of the electron density along the line-of-sight, along with Faraday Rotation estimates, and thus direct measurements of the SW magnetic field. Moreover, high-precision pulsar timing experiments such as Pulsar Timing Arrays (PTAs) can be strongly affected by the free electron distribution in the SW, and it is fundamentally important to understand, model and mitigate its influence on PTAs signals. With this proposal we aim to obtain high-cadence and precise measurements of the magnetic field and the electron density distribution of the SW by tracking three pulsars with low- to mid-ecliptic latitudes during their Solar approaches, and to reconstruct the SW dependence on the heliographic latitude. This will allow us to characterise the magnetic field of the SW and to collect precious information about the short-term fluctuations in the electron density that can appear as correlated noise in PTAs.
DOI: 10.15468/vasdrp
title: Bemerkenswerte Faltenwespen aus der äthiopischen Region. Teil 14 (Hymenoptera, Vespidae, Eumeninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gusenleitner, Josef, Rsa, Namibia and (2019): Bemerkenswerte Faltenwespen aus der äthiopischen Region. Teil 14 (Hymenoptera, Vespidae, Eumeninae). Linzer biol. Beitr. 51 (2): 811-819, DOI: http://doi.org/10.5281/zenodo.3738627
DOI: 10.17632/9v4y5cfbw5.1
title: Black Hawk Lake, Iowa seasonality data

description: Plate count, antibiotic resistance gene, relative abundance, and surface flow data. Used to analyze for seasonal differences of bacteria and antimicrobial resistance indicators.
DOI: 10.17632/ctyv7mjy6v.2
title: WristWidget retrospective 2019

description: Clinical data of patients with arthroscopically confirmed TFCC lesion including preoperative weight bearing capacity tests. We tested the difference between weight bearing capacity of the injured hand compared to the healthy hand and to the injured hand with WristWidget. Further analysis compared the groups: traumatic vs degenerative lesion; stable vs unstable DRUJ determined by the need for a stabilising operation. Data includes Patient ID, age at time of injury/symptom onset (A_Verletzung), handedness (R_L, right=1), injured side (Verl_R_L, right=1, left=2), supposed aetiology (Trauma: 1=traumatic, 2= degenerative), DASH-score (DASH_T0, points), time until examination (Verl_bis_T0, days), pain on forced supination/pronation (fPronation_T0 and fSupination_T0, yes=1, no=2), clinical stability of the DRUJ of the affected hand (DRUG_Stab_T0, 1=unstable, 2=stable), clinical stability of the DRUJ of the other hand (DRUG_Stab_K_T0, 1=unstable, 2=stable), pain on pressure on the ulnar fovea (TFCC_Druck_T0, yes=1, no=2), pain on forced ulnarduction (Abkant_T0, yes=1, no=2), handgrip of both hands (Jamar_R_T0 for right and Jamar_L_T0 for left, in kg), weight bearing capacity in kg of both hands (WB for weight bearing, li for left, re for right, krank for affected hand, gesund for other hand, in kg), weight bearing capacity of both hands with wristwidget (WB for weight bearing, WW for wristwidget), extension of the wrist during weight bearing test (Ext_max_re/li_T0 in degrees), derived variables concerning the weight bearing test (WB_Proz_T0 = WB_krank_T0/WB_gesund_T0; Diff_WW... = WB_WW- WB in kg; Proz_WB_WW... =WB_WW/WB*100), range of motion in degrees for dorsal/palmarflexion (D_re/li_T0 and P_re/li_T0, re for right, li for left), ulnar/radialduction (U_re/li_T0 and R_re/li_T0, re for right, li for left), pro/supination (Sup_re/li_T0 and Pro_re/li_T0, re for right, li for left), range of motion (Summe_ROM_re/li_T0 = D+P+U+R), sum of pronation and supination (Summe_SP_re/li_T0), range of motion of affected hand relative to other hand (ROM_Proz_T0= Summe_ROM_aa_T0 / Summe_ROM_bb_T0*100 with aa=Verl_R_L and re for right and li for left), sum of pronation and supination compared to the other hand (ROM_SP_Proz_T0=Summe_SP_aa_T0/Summe_SP_bb_T0), the same with differentiation between affected hand (krank) and other hand (gesund) differentiation between traumatic and degenerative lesions in the MRI report (MRT_ukb_traumatischdegenerativ, 0=no injury seen, 1=traumatic, 2=degenerative, MRI field strength (Tesla, value in Tesla, some missing values), static ulnar variance (Röntgenbefund_Ulna, , dynamic ulnar variance in mm, weight bearing test capacity during x-ray, derived variables regarding the weight bearing test, information about stabilising operation, information about intraoperative assessment on type of lesion (traumatic/degenerative). Further information on request as description field is limited.
DOI: 10.17632/f44c3zp2yp.1
title: Monoamine brain content of mainland and island populations of Podarcis siculus
DOI: 10.17632/pwd6cmzv9j.1
title: Short-term liquidity + macro

description: Dataset contains multiple quotes of various instruments (short-term liquidity) and global macro indicators or Russian financial market.
DOI: 10.25345/c56q6w
title: MassIVE MSV000085221 - Mostuea_brunonis stem alkaloid extract
title: Mostuea_brunonis (Gabon) stem alkaloid extract stems
DOI: 10.5281/zenodo.3709304
title: Evaluation of wear mechanisms in additive manufactured carbide-rich tool steels

description: Data supporting the study 'Evaluation of wear mechanisms in additive manufactured carbide-rich tool steels' Iakovakis et al. (2020). The dataset contains the macro-hardness and friction values, the x,y,z coordinates from profilometry and the videos from the in-situ scratch wear tests of three additive manufactured carbide-rich tool steels, Vibenite®150, Vibenite®280 and Vibenite®290. Macro-hardness measurement files(Vibenite 150/280/290 30 meas macro hardness.csv): The .csv files report the macro hardness for 30 measurements. Reciprocating tests files (Vibenite 150/280/290 cof.csv): The .csv report the parameters of the reciprocating dry wear tests and the friction forces. Profilometry measurements files (Vibenite 150/280/290 profilometry.dat): The .dat files report the x,y,z coordinates of the wear track from the reciprocating tests. Videos from in-situ scratch wear tests(Vibenite 150/280/290 100 passes.avi): The .avi files show the surface degradation effects during the scratch wear test.The sequence of scanning electron microscopy images were registered with ImageJ to generate a video.
DOI: 10.5281/zenodo.3738267
title: Alternate genome assemblies of Halicephalobus mephisto

description: Alternate genome assemblies were generated using Illumina data from a published study (Weinstein et al, 2019) publicly available on Sequence Reads Archive (SRA) at accession PRJNA528747. Assemblies were generated with either Platanus or SoapDenovo2 using varying step-sizes (Platanus) or kmers (SoapDenovo2) and using either a 1kb or 200bp cutoff on scaffold lengths. These assemblies were then analyzed in a separate study (under review) to identify regional expansions or contractions associated with high levels of heterozygosity. Cited: Weinstein, D.J., Allen, S.E., Lau, M.C.Y. <em>et al.</em> The genome of a subterrestrial nematode reveals adaptations to heat. <em>Nat Commun</em> <strong>10, </strong>5268 (2019). https://doi.org/10.1038/s41467-019-13245-8
DOI: 10.5281/zenodo.3738198
title: Human Kraken database

description: Human Kraken database built on 04/02/2020 for nf-core/viralrecon pipeline testing, Kraken version: <pre>Kraken version 2.0.8-beta Copyright 2013-2019, Derrick Wood (dwood@cs.jhu.edu)</pre> Commands: <pre>kraken2-build --db kraken2_human --threads 2 --download-taxonomy kraken2-build --db kraken2_human --threads 2 --download-library human kraken2-build --db kraken2_human --threads 2 --build</pre>
DOI: 10.5281/zenodo.3738199
title: Human Kraken database

description: Human Kraken database built on 04/02/2020 for nf-core/viralrecon pipeline testing, Kraken version: <pre>Kraken version 2.0.8-beta Copyright 2013-2019, Derrick Wood (dwood@cs.jhu.edu)</pre> Commands: <pre>kraken2-build --db kraken2_human --threads 2 --download-taxonomy kraken2-build --db kraken2_human --threads 2 --download-library human kraken2-build --db kraken2_human --threads 2 --build</pre>
DOI: 10.5281/zenodo.3738266
title: Alternate genome assemblies of Halicephalobus mephisto

description: Alternate genome assemblies were generated using Illumina data from a published study (Weinstein et al, 2019) publicly available on Sequence Reads Archive (SRA) at accession PRJNA528747. Assemblies were generated with either Platanus or SoapDenovo2 using varying step-sizes (Platanus) or kmers (SoapDenovo2) and using either a 1kb or 200bp cutoff on scaffold lengths. These assemblies were then analyzed in a separate study (under review) to identify regional expansions or contractions associated with high levels of heterozygosity. Cited: Weinstein, D.J., Allen, S.E., Lau, M.C.Y. <em>et al.</em> The genome of a subterrestrial nematode reveals adaptations to heat. <em>Nat Commun</em> <strong>10, </strong>5268 (2019). https://doi.org/10.1038/s41467-019-13245-8
DOI: 10.15468/bolnoo
title: Aradidae (Heteroptera) new to North America and Canada, with some additional provincial and state records for Canada and the USA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Heiss, Ernst, Scudder, Geoffrey G. E. (2019): Aradidae (Heteroptera) new to North America and Canada, with some additional provincial and state records for Canada and the USA. Linzer biol. Beitr. 51 (2): 821-829, DOI: http://doi.org/10.5281/zenodo.3738639
DOI: 10.5281/zenodo.3738561
title: Validation data: Multi-objective support vector regression reduces systematic error in moderate resolution maps of tree species abundance

description: Validation data used in the analysis presented by Legaard et al. (in review). Validation data are sufficient to replicate model comparisons presented in this paper. Note that model training data were provided by the USDA Forest Service, Forest Inventory and Analysis Program through a collaborative agreement, are maintained by the USDA Forest Service as confidential, and cannot be shared. Legaard, K., Simons-Legaard, E., Weiskittel, A., Multi-objective support vector regression reduces systematic error in moderate resolution maps of tree species abundance, Remote Sensing, in review.
DOI: 10.5281/zenodo.3738562
title: Validation data: Multi-objective support vector regression reduces systematic error in moderate resolution maps of tree species abundance

description: Validation data used in the analysis presented by Legaard et al. (in review). Validation data are sufficient to replicate model comparisons presented in this paper. Note that model training data were provided by the USDA Forest Service, Forest Inventory and Analysis Program through a collaborative agreement, are maintained by the USDA Forest Service as confidential, and cannot be shared. Legaard, K., Simons-Legaard, E., Weiskittel, A., Multi-objective support vector regression reduces systematic error in moderate resolution maps of tree species abundance, Remote Sensing, in review.
DOI: 10.15468/owarie
title: The Sphecid Wasps of the genus Cerceris L, 1802 of the " Biologiezentrum Linz " - Collection in Linz, Austria, from the Palearctic Region (part II). (Hymenoptera, Apoidea, Crabronidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dollfuss, Hermann (2019): The Sphecid Wasps of the genus Cerceris L, 1802 of the " Biologiezentrum Linz " - Collection in Linz, Austria, from the Palearctic Region (part II). (Hymenoptera, Apoidea, Crabronidae). Linzer biol. Beitr. 51 (2): 831-874, DOI: http://doi.org/10.5281/zenodo.3738648
DOI: 10.25345/c5bd7d
title: MassIVE MSV000085220 - whole-organ mucosal profile of human bladder
title: Proteome profiling of the whole human bladder mucosal layer.
DOI: 10.15468/btrxt7
title: A catalogue of the Sclerogibbidae (Hymenoptera, Chrysidoidea) of Eritrea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Madl, Michael (2019): A catalogue of the Sclerogibbidae (Hymenoptera, Chrysidoidea) of Eritrea. Linzer biol. Beitr. 51 (2): 877-879, DOI: http://doi.org/10.5281/zenodo.3738654