cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.he2gpt
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas, MVZ Herp Collection (Arctos), TNHC Herpetology Collection, KUBI Herpetology Collection, Fortalecimiento de las colecciones de ECOSUR. Primera fase (Herpetológica San cristóbal), CAS Herpetology (HERP), LACM Vertebrate Collection, UCM Amphibian and Reptile Collection (Arctos), Collection Herpetology SMF, Vertebrados terrestres del Corredor Biológico Sierra Madre del Sur, Chiapas, México)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 3c6ad080-bdbe-11da-ac59-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, 4cadac10-3e7b-11d9-8439-b8a03c50a862, c76cf030-2a95-11da-9cc1-b8a03c50a862)",
 "TaxonKey is Incilius canaliferus (Cope, 1877)",
 "Year 1950-2024"
 ]
}

 The dataset includes 672 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028972-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3zg2f
title: Occurrence Download

description: A dataset containing 2790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America, Georgia)",
 "TaxonKey is Scaphiopus holbrookii (Harlan, 1835)"
 ]
}

 The dataset includes 2790 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028973-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13835338
title: Adaptive immune responses to Omicron BA.4/BA.5-containing bivalent mRNA booster vaccination

description: This repository contains the immunoSEQ T-cell receptor (TCR) and B-cell receptor (BCR) repertoire data used in the manuscript titled "Adaptive immune responses to Omicron BA.4/BA.5-containing bivalent mRNA booster vaccination". This data set is composed of the TCR/BCR repertoire clonotype sequences and abundances derived from human peripheral blood mononuclear cell (PBMC) samples sorted for CD4, CD8 and CD19 before and after bivalent COVID mRNA booster vaccination. In total, 84 TCR samples (CD4+/CD8+ T cell populations at pre-/post-vaccination from 21 subjects) and 42 BCR samples (CD19+ populations at at pre-/post-vaccination from 21 subjects) are present in the data set.



Delmonte_TCR_data_84samples.rdsR object with the amino acid and nucleotide sequences, VDJ gene calls, and abundances of the TCR clonotypes.

Delmonte_BCR_data_42samples.rds    R object with the amino acid and nucleotide sequences, VDJ gene calls, and abundances of the BCR clonotypes.

Delmonte_TCR_data_compact_84samples.rdsR object with the amino acid sequences, VDJ gene calls, and abundances of the TCR clonotypes.

Delmonte_BCR_data_compact_42samples.rds R object with the amino acid sequences, VDJ gene calls, and abundances of the BCR clonotypes.

sampleExport_TCR.zipCompressed folder that includes the individual sample level TCR repertoire files in .tsv format.

sampleExport_BCR.zipCompressed folder that includes the individual sample level BCR repertoire files in .tsv format.


Funding statement: This work was supported by the Division of Intramural Research Programs of the National Institute of Allergy and Infectious Diseases and of the National Institute of Dental and Craniofacial Research, National Institutes of Health (grant AI001270).
DOI: 10.5281/zenodo.13835339
title: Adaptive immune responses to Omicron BA.4/BA.5-containing bivalent mRNA booster vaccination

description: This repository contains the immunoSEQ T-cell receptor (TCR) and B-cell receptor (BCR) repertoire data used in the manuscript titled "Adaptive immune responses to Omicron BA.4/BA.5-containing bivalent mRNA booster vaccination". This data set is composed of the TCR/BCR repertoire clonotype sequences and abundances derived from human peripheral blood mononuclear cell (PBMC) samples sorted for CD4, CD8 and CD19 before and after bivalent COVID mRNA booster vaccination. In total, 84 TCR samples (CD4+/CD8+ T cell populations at pre-/post-vaccination from 21 subjects) and 42 BCR samples (CD19+ populations at at pre-/post-vaccination from 21 subjects) are present in the data set.



Delmonte_TCR_data_84samples.rdsR object with the amino acid and nucleotide sequences, VDJ gene calls, and abundances of the TCR clonotypes.

Delmonte_BCR_data_42samples.rds    R object with the amino acid and nucleotide sequences, VDJ gene calls, and abundances of the BCR clonotypes.

Delmonte_TCR_data_compact_84samples.rdsR object with the amino acid sequences, VDJ gene calls, and abundances of the TCR clonotypes.

Delmonte_BCR_data_compact_42samples.rds R object with the amino acid sequences, VDJ gene calls, and abundances of the BCR clonotypes.

sampleExport_TCR.zipCompressed folder that includes the individual sample level TCR repertoire files in .tsv format.

sampleExport_BCR.zipCompressed folder that includes the individual sample level BCR repertoire files in .tsv format.


Funding statement: This work was supported by the Division of Intramural Research Programs of the National Institute of Allergy and Infectious Diseases and of the National Institute of Dental and Craniofacial Research, National Institutes of Health (grant AI001270).
DOI: 10.5281/zenodo.13835460
title: Mercury and Arsenic muscle concentration data as used in "Mixed model approaches can leverage database information to improve the estimation of size-adjusted contaminant concentrations in fish populations"

description: These mercury and arsenic concentration data, as recieved from Gretchen Lescord, and downloaded from the MOE fish contaminant database, were used to create the publication Mixed model approaches can leverage database information to improve the estimation of size-adjusted contaminant concentrations in fish populations. The markdown and code used for the analysis of this data can be found on Github at https://github.com/GLFC-WET/HGAS_master.
DOI: 10.5281/zenodo.13835461
title: Mercury and Arsenic muscle concentration data as used in "Mixed model approaches can leverage database information to improve the estimation of size-adjusted contaminant concentrations in fish populations"

description: These mercury and arsenic concentration data, as recieved from Gretchen Lescord, and downloaded from the MOE fish contaminant database, were used to create the publication Mixed model approaches can leverage database information to improve the estimation of size-adjusted contaminant concentrations in fish populations. The markdown and code used for the analysis of this data can be found on Github at https://github.com/GLFC-WET/HGAS_master.
DOI: 10.15468/dl.35g25j
title: Occurrence Download

description: A dataset containing 2240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Madhuca longifolia (J.Koenig ex L.) J.F.Macbr."
 ]
}

 The dataset includes 2240 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028974-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/3127
title: yapay_zeka_turkce_mmlu_liderlik_tablosu
DOI: 10.15468/dl.pdajq5
title: Occurrence Download

description: A dataset listing the 1700 species recorded in GBIF matching the query:
{
 "PublishingOrg" : [
 "is 96b23685-f195-4131-af29-ea9e160225dd"
 ]
}

 The dataset's 1700 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028958-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/3128
title: yapay_zeka_turkce_mmlu_model_cevaplari
DOI: 10.6073/pasta/f720e128e34296b93272cc0b4c3e9496
title: Monitoring juvenile Chinook salmon outmigration using rotary screw traps on Yuba River

description: California Department of Water Resources (DWR) currently operates
 multiple eight-foot rotary screw traps (RSTs) at Hallwood Boulevard
 RM 7.5. RST operations were conducted by CDFW and then under the
 direction of the Yuba River Management Team from 1999 to 2009 at the
 Hallwood Boulevard site; and resumed in 2022 by DWR. The Hallwood
 site will essentially sample all areas of the lower Yuba River
 upstream of Hallwood Boulevard. Additionally, the Hallwood site is
 located downstream of the bulk of adult Chinook salmon spawning
 areas and downstream of all known spring-run Chinook salmon
 spawning. Data are currently being used to inform the development of
 a juvenile production estimate (JPE) for spring-run Chinook salmon
 in the Sacramento River Watershed as required by Incidental Take
 Permit No. 2081-2019-006-00 issued by CA Department of Fish and
 Wildlife (CDFW) to DWR for the long-term operation of the State
 Water Project. Data within the current year’s monitoring season are
 considered provisional.
DOI: 10.15468/dl.s7gcd8
title: Occurrence Download

description: A dataset containing 1695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is November",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaptera novaeangliae (Borowski, 1781)",
 "Year 2023-2023"
 ]
}

 The dataset includes 1695 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028975-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26030/vnnf-yy78
title: BRIC-21 Bacillus subtilis transcriptome profile data

description: The BRIC-21 mission was designed to identify the response of Bacillus subtilis to the human spaceflight environment. For this mission, samples were grown in rich-medium using the Biological Research in Canister Petri Dish Fixation Units (BRIC-PDFU) spaceflight hardware. B. subtilis spores were inoculated during spaceflight, grown at the ambient ISS temperature, and frozen in the onboard -80 C freezer prior to returning to Earth. RNA was extracted from samples grown onboard the International Space Station (ISS) and matching Ground Controls for transcriptome analysis.
DOI: 10.15468/dl.y8na3v
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "GadmGid is UKR.23_1",
 "TaxonKey is Hyla arborea (Linnaeus, 1758)"
 ]
}

 The dataset includes 119 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028976-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dd3tc8
title: Occurrence Download

description: A dataset containing 2240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Madhuca longifolia (J.Koenig ex L.) J.F.Macbr."
 ]
}

 The dataset includes 2240 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028977-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9e99e
title: Occurrence Download

description: A dataset containing 1872172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "GadmGid is one of (ECU.19.6_1, ECU.19.3.3_1)",
 "TaxonKey is Aves",
 "Year 1850-2024"
 ]
}

 The dataset includes 1872172 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028956-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4rtjp
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-35.73528 -9.62047,-35.70436 -9.61624,-35.71536 -9.56589,-35.75246 -9.57408,-35.73528 -9.62047))",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Mammalia, Amphibia, Squamata)"
 ]
}

 The dataset's 6 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028968-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/fae347bd6e40bf6b62a2d0ab99a0c59c
title: Monitoring juvenile Chinook salmon outmigration using rotary screw traps on Feather River

description: California Department of Water Resources (DWR) currently operates
 multiple eight-foot rotary screw traps (RSTs) in both the Low Flow
 Channel (LFC) and High Flow Channel (HFC) of the upper 21.5 river
 miles of the Lower Feather River. The LFC extends from the Fish
 Barrier Dam at river mile (RM) 67.2 to the Thermalito Outlet (RM
 59). The HFC extends from the Thermalito Outlet to the confluence
 with the Sacramento River. This survey has been ongoing since 1997
 with the objective of documenting general salmonid emigration
 attributes, such as timing, abundance and composition of salmon and
 investigating the influence of environmental factors thought to
 initiate emigration, such as flow, turbidity and water temperature.
 Data from this monitoring will also be used to inform the
 development of a juvenile production estimate (JPE) for spring-run
 Chinook salmon in the Sacramento River Watershed as required by
 Incidental Take Permit No. 2081-2019-006-00 issued by CA Department
 of Fish and Wildlife (CDFW) to DWR for the long-term operation of
 the State Water Project. Data within the current year’s monitoring
 season are considered provisional.
DOI: 10.15468/dl.cuwrcj
title: Occurrence Download

description: A dataset containing 806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (KUBI Herpetology Collection, NMNH Extant Specimen Records (USNM, US), Sistemática e historia natural de algunos anfibios y reptiles de México, LACM Vertebrate Collection, TNHC Herpetology Collection, University of Michigan Museum of Zoology, Division of Reptiles & Amphibians, MVZ Herp Collection (Arctos), Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas, CAS Herpetology (HERP), CM Herps Collection, Computarización de las colecciones de vertebrados terrestres de la Escuela Nacional de Ciencias Biológicas, IPN Fase 4 (Anfibios y reptiles), Sistematización de las colecciones científicas del Instituto de Historia Natural y Ecología, (IHNE) Chiapas, Anfibiofauna endémica frente al cambio climático: análisis de sensibilidad e incertidumbre, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (vertebrados), Fortalecimiento de las colecciones de ECOSUR. Primera fase (Herpetológica San cristóbal), Vertebrados terrestres de San Juan de Camarones, Durango)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (b554c320-0560-11d8-b851-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862, ff90b050-c256-11db-b71b-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, 3c6ad080-bdbe-11da-ac59-b8a03c50a862, 6ea87510-0561-11d8-b851-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862, c1da06f0-580e-11dc-8a9e-b8a03c50a862)",
 "TaxonKey is Incilius coccifer (Cope, 1866)",
 "Year 1950-2024"
 ]
}

 The dataset includes 806 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028979-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.me2uhp
title: Occurrence Download

description: A dataset containing 2340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is December",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaptera novaeangliae (Borowski, 1781)",
 "Year 2023-2023"
 ]
}

 The dataset includes 2340 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028980-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tukcn6
title: Occurrence Download

description: A dataset containing 1900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia longissima H.L.Wendl."
 ]
}

 The dataset includes 1900 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028981-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrz4z3
title: Occurrence Download

description: A dataset containing 484355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-08-30",
 "EventDate is less than or equal to 2024-09-29",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 484355 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028941-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2c64g
title: Occurrence Download

description: A dataset containing 59690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.41473 37.81124,-6.71861 36.99414,-6.31296 36.08625,-4.92216 36.07454,-4.40061 37.13286,-5.41473 37.81124))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 59690 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028984-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrpg25
title: Occurrence Download

description: A dataset containing 2754 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Comunidad Zooplanctónica en el área de influencia del Proyecto Hidroeléctrico Ituango"
 ]
}

 The dataset includes 2754 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028985-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwkp57
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is one of (UCM Amphibian and Reptile Collection (Arctos), CAS Herpetology (HERP))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (4cadac10-3e7b-11d9-8439-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862)",
 "TaxonKey is Incilius cycladen (Lynch & Smith, 1966)",
 "Year 1950-2024"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028986-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysnw2x
title: Occurrence Download

description: A dataset containing 1602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Acipenser oxyrinchus Mitchill, 1815)"
 ]
}

 The dataset includes 1602 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028987-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m295dz
title: Occurrence Download

description: A dataset containing 5581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.96311 45.27235,12.49246 45.45308,12.38014 47.16437,4.62949 46.82439,5.96311 45.27235))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus cembra L."
 ]
}

 The dataset includes 5581 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028990-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnnw2q
title: Occurrence Download

description: A dataset containing 17715 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Endemic Species Research Institute–Herbarium"
 ]
}

 The dataset includes 17715 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332002-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.omm5gs
title: Occurrence Download

description: A dataset containing 349178 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is AMNH Herpetology Collections"
 ]
}

 The dataset includes 349178 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001652-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfubf8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxyurichthys lemayi (Smith, 1947)",
 "Country is Mozambique"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001652-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dguud6
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 729 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009603-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.