cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21353736.v1
title: Supplementary Material for: Induction of oxidative stress and alteration of synaptic gene expression in newborn hippocampal granule cells after developmental exposure to Aroclor 1254

description: Introduction: Hippocampal newborn neurons integrate into functional circuits where they play an important role in learning and memory. We previously showed that perinatal exposure to Aroclor 1254, a commercial mixture of polychlorinated biphenyls (PCBs) associated with alterations of cognitive function in children, disrupted the normal maturation of excitatory synapses in the dentate gyrus. We hypothesized that hippocampal immature neurons underlie some of the cognitive effects of PCBs. Methods: We used newly-generated neurons to examine the effects of PCBs in mice following maternal exposure. Newborn dentate granule cells were tagged with enhanced green fluorescent protein (EGFP) using a transgenic mouse line. The transcriptome of the newly generated granule cells was assessed using RNA sequencing. Results: Gestational and lactational exposure to 6 mg/kg/day of Aroclor 1254 disrupted the mRNA expression of 1308 genes in newborn granule cells. Genes involved in mitochondrial functions were highly enriched with 154 genes significantly increased in exposed compared to control mice. The upregulation of genes involved in oxidative phosphorylation was accompanied by signs of endoplasmic reticulum stress and an increase in lipid peroxidation, a marker of oxidative stress, in the subgranular zone of the dentate gyrus but not in mature granule cells in the granular zone. Aroclor 1254 exposure also disrupted the expression of synaptic genes. Using laser-captured subgranular and granular zones, this effect was restricted to the subgranular zone, where newborn neurons are located. Conclusion: Our data suggest that gene expression in newborn granule cells is disrupted by Aroclor 1254 and provide clues to the effects of endocrine disrupting chemicals on the brain.
DOI: 10.6084/m9.figshare.21656154
title: Data from Fish vulnerability to capture by trapping is modulated by individual parasite density

description: Data used in analyses
DOI: 10.6084/m9.figshare.21656154.v1
title: Data from Fish vulnerability to capture by trapping is modulated by individual parasite density

description: Data used in analyses
DOI: 10.6084/m9.figshare.21656151
title: R_script_outlining_analysis from Fish vulnerability to capture by trapping is modulated by individual parasite density

description: A script file outlining analysis used in the manuscript
DOI: 10.5517/ccdc.csd.cc2ckpbz
title: CCDC 2191741: Experimental Crystal Structure Determination

description: Related Article: Zhengshan Luo, Bowen Cao, Tianhang Song, Zequn Xing, Jun Ren, Zhongwen Wang|2022|J.Org.Chem.|87|15511|doi:10.1021/acs.joc.2c02061
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7388064
title: Supplementary Data for Tarim Silicic Magmas

description: 6 supplementary tables of raw data for the project on Tarim LIP.
DOI: 10.5517/ccdc.csd.cc2cncw9
title: CCDC 2194331: Experimental Crystal Structure Determination

description: Related Article: Thanh Binh Nguyen, Pascal Retailleau|2022|Chem.Commun.|58|13333|doi:10.1039/D2CC05539B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7388063
title: Supplementary Data for Tarim Silicic Magmas

description: 6 supplementary tables of raw data for the project on Tarim LIP.
DOI: 10.6084/m9.figshare.21664292
title: Gohar et al. 2022 data sheet.xlsx

description: <strong>This is the data of the manuscript entitled as"A quantitative and qualitative assessment of sugar beet genotypes' resistance to root-knot nematode, </strong><em><strong>Meloidogyne incognita", </strong></em><strong>which has been accepted for publication in </strong><em><strong>Frintiers in Plant Sciences</strong></em>
DOI: 10.6084/m9.figshare.21664292.v2
title: A quantitative and qualitative assessment of sugar beet genotypes' resistance to root-knot nematode, Meloidogyne incognita

description: <strong>This is the data of the manuscript entitled as"A quantitative and qualitative assessment of sugar beet genotypes' resistance to root-knot nematode, </strong><em><strong>Meloidogyne incognita", </strong></em><strong>which has been accepted for publication in </strong><em><strong>Frintiers in Plant Sciences</strong></em>
DOI: 10.5517/ccdc.csd.cc2cpxrr
title: CCDC 2195815: Experimental Crystal Structure Determination

description: Related Article: Jian Han, Bo Xiao, Tian-Yu Sun, Min Wang, Long Jin, Wangzhi Yu, Yuqin Wang, Dong-Mei Fang, Yan Zhou, Xiao-Feng Wu, Yun-Dong Wu, Jian Liao|2022|J.Am.Chem.Soc.|144|21800|doi:10.1021/jacs.2c10559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cqftc
title: CCDC 2196313: Experimental Crystal Structure Determination

description: Related Article: Guangying Tan, Fritz Paulus, Ángel Rentería-Gómez, Remy F. Lalisse, Constantin G. Daniliuc, Osvaldo Gutierrez, Frank Glorius|2022|J.Am.Chem.Soc.|144|21664|doi:10.1021/jacs.2c09244
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cqfvd
title: CCDC 2196314: Experimental Crystal Structure Determination

description: Related Article: Guangying Tan, Fritz Paulus, Ángel Rentería-Gómez, Remy F. Lalisse, Constantin G. Daniliuc, Osvaldo Gutierrez, Frank Glorius|2022|J.Am.Chem.Soc.|144|21664|doi:10.1021/jacs.2c09244
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cqfwf
title: CCDC 2196315: Experimental Crystal Structure Determination

description: Related Article: Guangying Tan, Fritz Paulus, Ángel Rentería-Gómez, Remy F. Lalisse, Constantin G. Daniliuc, Osvaldo Gutierrez, Frank Glorius|2022|J.Am.Chem.Soc.|144|21664|doi:10.1021/jacs.2c09244
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.23708/6erbmy
title: Native plants reported as threatened by identified alien plants in the global IUCN Red List

description: This dataset includes 1,407 pairs of threatened native–invasive alien plants extracted from the IUCN Red List of Threatened Species (https://www.iucnredlist.org/). For each pair, the threat category of the threatened native species (NT, VU, EN, CR, EW, EX), its population trend (increasing, stable, decreasing, unknown), whether the native species is restricted to islands (yes, no, partially) and whether the native species has been classified as threatened based exclusively on IUCN-red-list criterion B (restricted geographic range size) are specified. The R code of the analyses performed in the paper is provided in a second file.
DOI: 10.23708/ckrdbw
title: Racine 2.2

description: RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et les racines. Elle donne accès à la densité des impacts (nombre par unité de surface de sol) et à leur répartition spatiale (gradients, hétérogénéités). Puis, par modélisation, à l’estimation des différentes caractéristiques fonctionnelles du système racinaire : (1) les densités de longueur racinaire (longueur par volume de sol), (2) les distances moyennes entre les racines dans un petit volume de sol (Newman 1966), (3) le PRER (Potential Root Extraction Ratio), ou taux d’exploration racinaire (Leifi et al 2011, Chopart et al 2012), (4) la répartition spatiale du système racinaire (2D) sur une tranche de sol pour analyser les gradients et les hétérogénéités de croissance racinaire (« clumping »). Cette méthodologie permet de procéder dans des champs cultivés en station expérimentale ou chez des agriculteurs à un diagnostic agronomique (effets du sol, du climat, des pratiques culturales) ou à une comparaison de cultivars.
DOI: 10.6084/m9.figshare.21665573.v1
title: DEGs-intestine.csv

description: RNA-seq
DOI: 10.6084/m9.figshare.21665573
title: DEGs-intestine.csv

description: RNA-seq
DOI: 10.6084/m9.figshare.21665576
title: DEGs-liver.csv

description: RNA-Seq
DOI: 10.5517/ccdc.csd.cc2cypkl
title: CCDC 2203280: Experimental Crystal Structure Determination

description: Related Article: Siyuan Wang, Flavio della Sala, Matthew J. Cliff, George F. S. Whitehead, Iñigo J. Vitórica-Yrezábal, Simon J. Webb|2022|J.Am.Chem.Soc.|144|21648|doi:10.1021/jacs.2c09103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cyplm
title: CCDC 2203281: Experimental Crystal Structure Determination

description: Related Article: Siyuan Wang, Flavio della Sala, Matthew J. Cliff, George F. S. Whitehead, Iñigo J. Vitórica-Yrezábal, Simon J. Webb|2022|J.Am.Chem.Soc.|144|21648|doi:10.1021/jacs.2c09103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cypmn
title: CCDC 2203282: Experimental Crystal Structure Determination

description: Related Article: Siyuan Wang, Flavio della Sala, Matthew J. Cliff, George F. S. Whitehead, Iñigo J. Vitórica-Yrezábal, Simon J. Webb|2022|J.Am.Chem.Soc.|144|21648|doi:10.1021/jacs.2c09103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cypnp
title: CCDC 2203283: Experimental Crystal Structure Determination

description: Related Article: Siyuan Wang, Flavio della Sala, Matthew J. Cliff, George F. S. Whitehead, Iñigo J. Vitórica-Yrezábal, Simon J. Webb|2022|J.Am.Chem.Soc.|144|21648|doi:10.1021/jacs.2c09103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/4635306
title: Compiled PDF paper MUCH EASIER TO READ
DOI: 10.5517/ccdc.csd.cc2cz9h5
title: CCDC 2203867: Experimental Crystal Structure Determination

description: Related Article: Yi-Hang Deng, Lei Qin, Ran Li, Yan-Bo Wang, Jun-Yan Zhu, Ji-Ya Fu, Chuan-Bao Zhang, Lili Zhao|2022|Org.Lett.|24|8277|doi:10.1021/acs.orglett.2c03179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cz9j6
title: CCDC 2203868: Experimental Crystal Structure Determination

description: Related Article: Yi-Hang Deng, Lei Qin, Ran Li, Yan-Bo Wang, Jun-Yan Zhu, Ji-Ya Fu, Chuan-Bao Zhang, Lili Zhao|2022|Org.Lett.|24|8277|doi:10.1021/acs.orglett.2c03179
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/4635345
title: Compiled PDF paper MUCH EASIER TO READ
DOI: 10.5281/zenodo.7326708
title: Sampling metadata for the publication: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem "

description: Meta data of sampling location, time and depth of eDNA samples used in the study: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem". As well as taxonomic identification of sponges, their microbial abundance and growth form.
DOI: 10.5281/zenodo.7326707
title: Sampling metadata for the publication: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem "

description: Meta data of sampling location, time and depth of eDNA samples used in the study: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem". As well as taxonomic identification of sponges, their microbial abundance and growth form.
DOI: 10.6084/m9.figshare.21541560
title: Functional traits and environment jointly determine the spatial scaling of population stability in North American birds

description: Online datasets for "Functional traits and environment jointly determine the spatial scaling of population stability in North American birds" by Hong <em>et al.</em> 2022
DOI: 10.5281/zenodo.7388387
title: data on life table and biology of Brevicoryne brassicae and Lipaphis pseudobrassicae

description: A file on the biology and another on the life table and fertility of Brevicoryne brassicae and Lipaphis pseudobrassicae. The Life Table and Fertility Archive is a program for obtaining results called "Tabvida". The handbook for understanding the program can be obtained at the link: https://www.embrapa.br/busca-de-publicacoes/-/publicacao/870882/tabvida-sistema-computacional-para-calculo-de-parametros-biologicos- aphid-population-growth-and
DOI: 10.5281/zenodo.7388386
title: data on life table and biology of Brevicoryne brassicae and Lipaphis pseudobrassicae

description: A file on the biology and another on the life table and fertility of Brevicoryne brassicae and Lipaphis pseudobrassicae. The Life Table and Fertility Archive is a program for obtaining results called "Tabvida". The handbook for understanding the program can be obtained at the link: https://www.embrapa.br/busca-de-publicacoes/-/publicacao/870882/tabvida-sistema-computacional-para-calculo-de-parametros-biologicos- aphid-population-growth-and
DOI: 10.6084/m9.figshare.21665552.v1
title: Supplementary Material for: Meta-Analysis of Human Leukocyte Antigen-G 3′UTR Polymorphisms Confer Susceptibility to Recurrent Miscarriage

description: <b><i>Objectives:</i></b> The current systematic review and meta-analysis have shown that specific HLA-G 3′ UTR variants are associated with recurrent miscarriage (RM). Our aim was to investigate the relevance of HLA-G 3′ UTR polymorphisms with the risk of RM. <b><i>Design:</i></b> A combined meta-analysis was implemented in this study. <b><i>Participants/Materials, Setting, Methods:</i></b> Common electronic databases including PubMed, Embase, Web of Science, China National Knowledge Infrastructure, Cochrane Library, and Google Scholar were used to seek eligible articles up to August 2021. <b><i>Results:</i></b> Forty-four eligible articles with 4,467 cases and 3,955 controls were finally enrolled. Our meta-results suggested that 14 bp insertion allele was associated with elevated risk of RM (allelic model: OR = 1.18, 95% CI = 1.07–1.31, <i>p</i> = 0.001). Besides, a significant heterogeneity was observed between studies. Further subgroup analyses based on ethnicity revealed similar positive results in both the Caucasian and Asian subgroups but not in the Middle East subgroup. Moreover, rs1063320 G allele conferred elevated susceptibility to RM in Asian group (allelic model: OR = 1.54, 95% CI = 1.17–2.03, <i>p</i> = 0.002). Additionally, pooled results showed a decreased risk of RM in mothers carrying rs1710 G allele (allelic model: OR = 0.68, 95% CI = 0.55–0.85, <i>p</i> &lt; 0.001) and an increased risk with rs9380142 A allele (allelic model: OR = 1.45, 95% CI = 1.15–1.83, <i>p</i> = 0.002). Further stratified analyses by race showed that these positive results were mainly from the associations observed in Asian populations. <b><i>Limitations:</i></b> The main limitation is that the enrolled number of individuals was relatively small. Thus, the results should be cautiously considered. <b><i>Conclusions:</i></b> Although the current systematic review and meta-analysis have shown that specific HLA-G 3′ UTR variants are associated with RM, a high degree of bias is present and further studies are needed to validate this causative effect.
DOI: 10.6084/m9.figshare.21665597
title: data.tar.gz

description: 1. Time histories of the instantaneous emptying rates for each Strouhal number (St) and contraction ratio (alpha). 2. Time-averaged emptying rate and mixing strength.
DOI: 10.6084/m9.figshare.17826404
title: Monthly-Averaged XCO2 in Global

description: F:\GOSATMc\Hdf\NHDFObtaining highly accurate and high-resolution spatiotemporal maps of <em>carbon dioxide</em> concentration (XCO<sub>2</sub>) distributions is crucial for promoting the study of the carbon cycle, carbon sources, carbon sinks, carbon neutralization, and carbon emissions assessed by top-down theory. However, the official discrete satellite data provided by Gosat-2, OCO-2, and OCO-3 have low efficiency due to clouds and aerosols. Here, we present carbon dioxide cover, an innovative methodology to obtain XCO<sub>2</sub> maps of high spatiotemporal resolution by using satellite data. The method is developed to support the producers and end users of the global-scale study of the carbon cycle by providing a transparent, version-based framework. This mapping technique can fill the spatiotemporal gaps in satellite measurements, and its accuracy and resolution are sufficiently high for scientific application. It enables the development of strategies to reduce XCO<sub>2</sub> at the global scale.
DOI: 10.6084/m9.figshare.17826404.v5
title: Monthly-Averaged XCO2 in Global

description: F:\GOSATMc\Hdf\NHDFObtaining highly accurate and high-resolution spatiotemporal maps of <em>carbon dioxide</em> concentration (XCO<sub>2</sub>) distributions is crucial for promoting the study of the carbon cycle, carbon sources, carbon sinks, carbon neutralization, and carbon emissions assessed by top-down theory. However, the official discrete satellite data provided by Gosat-2, OCO-2, and OCO-3 have low efficiency due to clouds and aerosols. Here, we present carbon dioxide cover, an innovative methodology to obtain XCO<sub>2</sub> maps of high spatiotemporal resolution by using satellite data. The method is developed to support the producers and end users of the global-scale study of the carbon cycle by providing a transparent, version-based framework. This mapping technique can fill the spatiotemporal gaps in satellite measurements, and its accuracy and resolution are sufficiently high for scientific application. It enables the development of strategies to reduce XCO<sub>2</sub> at the global scale.
DOI: 10.48505/nims.3839
title: Quantitative Evaluation of Fiber Fuse Initiation Probability in Typical Single-mode Fibers

description: At least 5.5 W of light (1480 nm) was needed to initiate a fiber fuse in an SMF-28e+ fiber in a static condition where the fiber end is placed on a highly Co-doped borosilicate glass surface for five seconds. The minimum initiation power, P_init, decreased with the mode field diameter for three fibers including two dispersion-shifted samples. However, P_init did not decrease when the local temperature at the fiber end was increased to 550 degC. This suggests that initiation requires a steep temperature gradient around the fiber core rather than the external application of heat.