cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20025716
title: Supplementary Material for: Specific IgE to Total IgE Ratio Does Not Improve Peanut Diagnostic Accuracy in Adults

description: <b><i>Background:</i></b> Peanut specific IgE (sIgE) can lead to false-positive results. <b><i>Objective:</i></b> We aimed to assess whether peanut sIgE to total IgE (tIgE) ratio improves accuracy in predicting clinical reactivity to peanut compared to peanut sIgE alone, which has not been explored in the adult population so far. <b><i>Method:</i></b> A retrospective chart review was performed for adults who underwent peanut oral food challenge (OFC) and/or oral immunotherapy (OIT) at the Centre Hospitalier de l’Université de Montréal’s allergy clinic between January 2017 and July 2021. Patients with positive peanut OFC and/or undergoing OIT were considered peanut-allergic. Patients with negative OFC were considered peanut-tolerant. Peanut sIgE to tIgE ratios were calculated and performance characteristics of the sIgE to tIgE ratio were compared to sIgE alone by using receiver operator characteristics curves. <b><i>Results:</i></b> Forty-two patients were included (52% male) with a median age of 26 years (range 14–54). Forty-five percent had atopic dermatitis. Median sIgE levels were 2.64 kU<sub>A</sub>/L (range 0.1–100), median tIgE levels were 154 kU<sub>A</sub>/L (range 19–3,400), and median sIgE to tIgE ratio was 0.66% (range 0.04–38.3). Twenty-four patients (57%) were classified as peanut-allergic and 18 (43%) as peanut tolerant. The area under the curve for peanut sIgE was 0.921 compared to 0.926 for peanut sIgE/tIgE (<i>p</i> not statistically significant). <b><i>Conclusions:</i></b> We found that there was no significant benefit in using peanut sIgE to tIgE ratio over sIgE alone to predict peanut reactivity in an adult population. Larger prospective studies are needed to further confirm these findings.
DOI: 10.6084/m9.figshare.6693452
title: Diagnosis, presence of endoparasites, and local knowledge on the infestation of the exotic giant African snail (gastropoda: pulmonata: achatinidae), in the urban zone of Rio Branco, Acre, Brazil

description: Abstract The giant African land snail, Lissachatina fulica is considered to be one of the world's worst invader species. This snail can provoke major economic and public health problems in urban areas, in particular as a potential vector of nematodes that infect both humans and animals. In this context, the present study investigated the extent of the infestation of this exotic snail in the urban neighborhoods of the city of Rio Branco, verified the presence of endoparasites in these snails, and evaluated the knowledge of local residents with regard to the presence of this invader species. For this, daytime surveys were conducted between August 2015 and June 2016. For the analysis of endoparasites, 44 live specimens were sent to the National Reference Laboratory for Schistosomiasis-Malacology (LRNEM) of the Oswaldo Cruz Institute (FIOCRUZ). The knowledge of local residents in the infested neighborhoods was investigated using questionnaires with direct, closed questions. The exotic invader species (L. fulica) was detected in 24 of the 36 neighborhoods visited. A total of 858 L. fulica specimens were collected, of which, 329 were alive and 527 were dead. The total length of the shell ranged from 0.7 to 14.2 cm, with a mean±standard deviation of 4.8±2.21 cm. The density of snails in the areas surveyed varied from 0.34 individuals/m2 to 3.54 individuals/m2, while the mean density within the whole study area was estimated to be 0.54 individuals/m2. Mature eggs were found in only 9 (2.7%) of the 329 specimens dissected. The endoparasitological analysis revealed the presence of rhabditiform larvae in 84% of the specimens examined, as well as the nematodes Aelurostrongylus abstrusus (22.7% of the specimens) and Strongyluris sp. (2.2%). A total of 39 local residents were interviewed, and while all were conscious of the presence of the mollusk, none knew its origin or the most adequate way of dealing with it. The results of the study indicate an ample infestation of the city of Rio Branco by L. fulica, and confirmed a complete lack of intervention on the part of the local authorities for the implementation of measures foe the control and management of this pest within the urban zone of Rio Branco.
DOI: 10.6084/m9.figshare.6693452.v1
title: Diagnosis, presence of endoparasites, and local knowledge on the infestation of the exotic giant African snail (gastropoda: pulmonata: achatinidae), in the urban zone of Rio Branco, Acre, Brazil

description: Abstract The giant African land snail, Lissachatina fulica is considered to be one of the world's worst invader species. This snail can provoke major economic and public health problems in urban areas, in particular as a potential vector of nematodes that infect both humans and animals. In this context, the present study investigated the extent of the infestation of this exotic snail in the urban neighborhoods of the city of Rio Branco, verified the presence of endoparasites in these snails, and evaluated the knowledge of local residents with regard to the presence of this invader species. For this, daytime surveys were conducted between August 2015 and June 2016. For the analysis of endoparasites, 44 live specimens were sent to the National Reference Laboratory for Schistosomiasis-Malacology (LRNEM) of the Oswaldo Cruz Institute (FIOCRUZ). The knowledge of local residents in the infested neighborhoods was investigated using questionnaires with direct, closed questions. The exotic invader species (L. fulica) was detected in 24 of the 36 neighborhoods visited. A total of 858 L. fulica specimens were collected, of which, 329 were alive and 527 were dead. The total length of the shell ranged from 0.7 to 14.2 cm, with a mean±standard deviation of 4.8±2.21 cm. The density of snails in the areas surveyed varied from 0.34 individuals/m2 to 3.54 individuals/m2, while the mean density within the whole study area was estimated to be 0.54 individuals/m2. Mature eggs were found in only 9 (2.7%) of the 329 specimens dissected. The endoparasitological analysis revealed the presence of rhabditiform larvae in 84% of the specimens examined, as well as the nematodes Aelurostrongylus abstrusus (22.7% of the specimens) and Strongyluris sp. (2.2%). A total of 39 local residents were interviewed, and while all were conscious of the presence of the mollusk, none knew its origin or the most adequate way of dealing with it. The results of the study indicate an ample infestation of the city of Rio Branco by L. fulica, and confirmed a complete lack of intervention on the part of the local authorities for the implementation of measures foe the control and management of this pest within the urban zone of Rio Branco.
DOI: 10.6084/m9.figshare.6503120
title: Gomphonema Ehrenberg (Bacillariophyceae, Gomphonemataceae) of the São Francisco Falso River, Paraná, Brazil

description: Abstract: Gomphonema Ehrenberg is a genus well represented in periphytic algal flora of epicontinental environments. The substrate colonization is facilitated by the secretion of mucilage by the pore field, allowing cell adhesion. Samples were scraped off and analyzed from vegetative portions of the macrophyte Eichhornia azurea Kunth, collected in São Francisco Falso River, located in Santa Helena City, Paraná State. The sampling occurred in four different sites, in four different periods, totaling 16 samples. The quantitative material analysis resulted in 28 identified taxa, in which Gomphonema brasiliense ssp. pacificum, Gomphonema neoapiculatum Lange-Bertalot, Reichardt & Metzeltin Gomphonema pantropicum Reichardt and Gomphonema perapicatum Metzeltin & Lange-Bertalot represented pioneer citations for Paraná diatomflorula. The ultrastructure observations of some species were crucial to distinguish a few taxa, as Gomphonema brasiliense and Gomphonema brasiliensoide D. Metzeltin, Lange-Bertalot & F. García-Rodríguez. We suggest future studies in this environment, once it has propitious characteristics to the development of epilithic diatoms. Moreover, phylogenetic studies are also recommended for a better distinction of taxa with a wide morphologic variation.
DOI: 10.6084/m9.figshare.6503120.v1
title: Gomphonema Ehrenberg (Bacillariophyceae, Gomphonemataceae) of the São Francisco Falso River, Paraná, Brazil

description: Abstract: Gomphonema Ehrenberg is a genus well represented in periphytic algal flora of epicontinental environments. The substrate colonization is facilitated by the secretion of mucilage by the pore field, allowing cell adhesion. Samples were scraped off and analyzed from vegetative portions of the macrophyte Eichhornia azurea Kunth, collected in São Francisco Falso River, located in Santa Helena City, Paraná State. The sampling occurred in four different sites, in four different periods, totaling 16 samples. The quantitative material analysis resulted in 28 identified taxa, in which Gomphonema brasiliense ssp. pacificum, Gomphonema neoapiculatum Lange-Bertalot, Reichardt & Metzeltin Gomphonema pantropicum Reichardt and Gomphonema perapicatum Metzeltin & Lange-Bertalot represented pioneer citations for Paraná diatomflorula. The ultrastructure observations of some species were crucial to distinguish a few taxa, as Gomphonema brasiliense and Gomphonema brasiliensoide D. Metzeltin, Lange-Bertalot & F. García-Rodríguez. We suggest future studies in this environment, once it has propitious characteristics to the development of epilithic diatoms. Moreover, phylogenetic studies are also recommended for a better distinction of taxa with a wide morphologic variation.
DOI: 10.6084/m9.figshare.20025721.v1
title: Size-related and seasonal changes in the diet of the non-native Cichla kelberi Kullander & Ferreira, 2006 in a lowland reservoir in the southeastern Brazil

description: Abstract: We examined size-related and seasonal changes in the diet of the peacock bass Cichla kelberi in a tropical lowland reservoir in southeastern Brazil over three hydro-climatic seasons: summer (high rainfall and temperature), winter (low rainfall and temperature), and late spring (increasing rainfall and temperature) during two years (2006-2007). The tested hypothesis is that this non-native predator fish changes diet during the subadult and adult phases and among seasons to adapt in new colonized environment. Fishes of the families Clupeidae (Platanichthys platana), Characidae (Astyanax spp.) and Cichlidae (Cichla kelberi) were the most important food items, followed by insects of the order Odonata. Cannibalism was also recorded for the largest individuals. A significant size-related change in diet was found with the smallest individuals (Total Length, TL &lt; 20 cm) preying mainly on fishes, whereas the larger individuals (TL &gt; 30 cm) preyed mainly on Odonata. The niche breadth increased during growth, with the largest individuals having a diet more evenly distributed among the available resources. No significant seasonal differences in diet composition were found, but stomachs with higher degree of volume occupied by food were more frequent in late spring than in summer. Conversely, the highest niche breadth was found during the summer compared to the other seasons. Together, these observations suggest an efficient use of the available resources by this top predator in this new colonized system.
DOI: 10.6084/m9.figshare.20025721
title: Size-related and seasonal changes in the diet of the non-native Cichla kelberi Kullander & Ferreira, 2006 in a lowland reservoir in the southeastern Brazil

description: Abstract: We examined size-related and seasonal changes in the diet of the peacock bass Cichla kelberi in a tropical lowland reservoir in southeastern Brazil over three hydro-climatic seasons: summer (high rainfall and temperature), winter (low rainfall and temperature), and late spring (increasing rainfall and temperature) during two years (2006-2007). The tested hypothesis is that this non-native predator fish changes diet during the subadult and adult phases and among seasons to adapt in new colonized environment. Fishes of the families Clupeidae (Platanichthys platana), Characidae (Astyanax spp.) and Cichlidae (Cichla kelberi) were the most important food items, followed by insects of the order Odonata. Cannibalism was also recorded for the largest individuals. A significant size-related change in diet was found with the smallest individuals (Total Length, TL &lt; 20 cm) preying mainly on fishes, whereas the larger individuals (TL &gt; 30 cm) preyed mainly on Odonata. The niche breadth increased during growth, with the largest individuals having a diet more evenly distributed among the available resources. No significant seasonal differences in diet composition were found, but stomachs with higher degree of volume occupied by food were more frequent in late spring than in summer. Conversely, the highest niche breadth was found during the summer compared to the other seasons. Together, these observations suggest an efficient use of the available resources by this top predator in this new colonized system.
DOI: 10.6084/m9.figshare.6317912
title: Ichthyofauna of the Ribeirão Frutal and tributaries, upper Rio Paraná basin, Minas Gerais, Southeastern Brazil

description: Abstract: The Ribeirão Frutal basin is located within the upper Rio Paraná system, in the Frutal municipality, Minas Gerais State, Southeastern Brazil. Until now, there was no complete ichthyological survey published for this small basin. Therefore, here we provided a list of fish species from the Ribeirão Frutal and some of its tributaries. We found 31 species of fishes representing five orders and ten families. We identify a likely undescribed and five non-native species in the Frutal basin. Lastly, we recommend new surveys of fishes in small hydrographic basins within upper Rio Paraná system.
DOI: 10.6084/m9.figshare.6317912.v1
title: Ichthyofauna of the Ribeirão Frutal and tributaries, upper Rio Paraná basin, Minas Gerais, Southeastern Brazil

description: Abstract: The Ribeirão Frutal basin is located within the upper Rio Paraná system, in the Frutal municipality, Minas Gerais State, Southeastern Brazil. Until now, there was no complete ichthyological survey published for this small basin. Therefore, here we provided a list of fish species from the Ribeirão Frutal and some of its tributaries. We found 31 species of fishes representing five orders and ten families. We identify a likely undescribed and five non-native species in the Frutal basin. Lastly, we recommend new surveys of fishes in small hydrographic basins within upper Rio Paraná system.
DOI: 10.6084/m9.figshare.6693308
title: Fish fauna in forested and rural streams from an ecoregion of high endemism, lower Iguaçu River basin, Brazil

description: Abstract The fish fauna of eight streams with different land uses of their watersheds (forested and rural areas) in the lower Iguaçu River basin was inventoried, in order to evaluate the composition and species richness. The fishes were sampled quarterly from May 2015 to February 2016, using the electrofishing technique. In total, 4,239 individuals were captured, belonging to six orders, 11 families and 26 species. The orders Siluriformes and Characiformes, and the families Characidae and Trichomycteridae were the most specious. Of the total species sampled, 65% were endemic to the Iguaçu River basin, four are not described and four are non-native. As expected to the Iguaçu River basin, the inventoried fauna revealed low richness and high endemism, however was highly nested within the species composition reported for main channel of Iguaçu River and their larger tributaries. The species recorded here corresponded to a subset of 24.5% of the 106 species documented for the basin. The streams presented different faunas, with only two species (Astyanax bifasciatus and Trichomycterus stawiarski) common to both forested and rural streams. In addition, higher species richness was recorded in streams inserted in conservation units. The presence of non-native species was more frequent in rural streams. These results highlight the importance of the preservation of forested areas in the watersheds of lower Iguaçu, which presents a peculiar fish fauna, along with several threats to biodiversity such as habitat loss by intensive agriculture use.
DOI: 10.6084/m9.figshare.6693308.v1
title: Fish fauna in forested and rural streams from an ecoregion of high endemism, lower Iguaçu River basin, Brazil

description: Abstract The fish fauna of eight streams with different land uses of their watersheds (forested and rural areas) in the lower Iguaçu River basin was inventoried, in order to evaluate the composition and species richness. The fishes were sampled quarterly from May 2015 to February 2016, using the electrofishing technique. In total, 4,239 individuals were captured, belonging to six orders, 11 families and 26 species. The orders Siluriformes and Characiformes, and the families Characidae and Trichomycteridae were the most specious. Of the total species sampled, 65% were endemic to the Iguaçu River basin, four are not described and four are non-native. As expected to the Iguaçu River basin, the inventoried fauna revealed low richness and high endemism, however was highly nested within the species composition reported for main channel of Iguaçu River and their larger tributaries. The species recorded here corresponded to a subset of 24.5% of the 106 species documented for the basin. The streams presented different faunas, with only two species (Astyanax bifasciatus and Trichomycterus stawiarski) common to both forested and rural streams. In addition, higher species richness was recorded in streams inserted in conservation units. The presence of non-native species was more frequent in rural streams. These results highlight the importance of the preservation of forested areas in the watersheds of lower Iguaçu, which presents a peculiar fish fauna, along with several threats to biodiversity such as habitat loss by intensive agriculture use.
DOI: 10.6084/m9.figshare.20025724
title: Abundance and composition of the medium to large-sized mammals in a private area of a REDD+ project in Acre, Brazil

description: Abstract: The implementation of private areas focused on conservation of species and habitats, combined with REDD+ policies, has become an important ally for biodiversity conservation, expanding the conservation areas of the most varied habitats, covering key groups such as large mammals, which are extremely important for the maintenance of ecosystem services. In the upper region of the Purus River in Acre, Brazil, an inventory was carried out using camera-traps, of medium and large mammals community in a private REDD+ area, known as the Purus Project. A total of 19 species of mammals were recorded with an effort of 1859 trap-nigths, including rare, endangered and key species. It is estimated that the richness for the area is of 22 species. Endangered and rare species such as the tapir (Tapirus terrestris) and the short-eared dog (Atelocynus microtis) presented high rates of relative abundance compared to other Conservation Units (UCs). The richness of medium to large-sized mammals recorded in the Purus Project underscores the importance of REDD+ in private areas for the conservation of this group, given the challenges for inclusion and creation of new protected areas. REDD+ projects in privates' areas become an important component for conservation of species and the connection between public conservation units favoring the spread of species and populations between areas, and consequently the gene flow.
DOI: 10.6084/m9.figshare.20025724.v1
title: Abundance and composition of the medium to large-sized mammals in a private area of a REDD+ project in Acre, Brazil

description: Abstract: The implementation of private areas focused on conservation of species and habitats, combined with REDD+ policies, has become an important ally for biodiversity conservation, expanding the conservation areas of the most varied habitats, covering key groups such as large mammals, which are extremely important for the maintenance of ecosystem services. In the upper region of the Purus River in Acre, Brazil, an inventory was carried out using camera-traps, of medium and large mammals community in a private REDD+ area, known as the Purus Project. A total of 19 species of mammals were recorded with an effort of 1859 trap-nigths, including rare, endangered and key species. It is estimated that the richness for the area is of 22 species. Endangered and rare species such as the tapir (Tapirus terrestris) and the short-eared dog (Atelocynus microtis) presented high rates of relative abundance compared to other Conservation Units (UCs). The richness of medium to large-sized mammals recorded in the Purus Project underscores the importance of REDD+ in private areas for the conservation of this group, given the challenges for inclusion and creation of new protected areas. REDD+ projects in privates' areas become an important component for conservation of species and the connection between public conservation units favoring the spread of species and populations between areas, and consequently the gene flow.
DOI: 10.6084/m9.figshare.6832208
title: Reptile diversity of Sinos River Basin

description: Abstract This work aimed to catalog the species of reptiles of the Sinos River Basin based on records from scientific collections and data collected in the field. We recorded 65 species, including 46 snakes, nine lizards, five turtles, four amphisbaenians and one caiman. Snakes composed most of the recorded specimens (91.3%), and the three most representative are venomous and of medical importance. The most urban region of the basin (Lowland) has the highest number of records. This fact may be a reflection of the high human population density in this region, which would have favored the encounter of specimens and their sending to scientific collections and research centers. It is worth highlighting that most species with few specimens in the collections are also rarely observed in the wild, such as Clelia hussani and Urostrophus vautieri. This observation makes it feasible that these populations are small or that they are declining.
DOI: 10.6084/m9.figshare.6832208.v1
title: Reptile diversity of Sinos River Basin

description: Abstract This work aimed to catalog the species of reptiles of the Sinos River Basin based on records from scientific collections and data collected in the field. We recorded 65 species, including 46 snakes, nine lizards, five turtles, four amphisbaenians and one caiman. Snakes composed most of the recorded specimens (91.3%), and the three most representative are venomous and of medical importance. The most urban region of the basin (Lowland) has the highest number of records. This fact may be a reflection of the high human population density in this region, which would have favored the encounter of specimens and their sending to scientific collections and research centers. It is worth highlighting that most species with few specimens in the collections are also rarely observed in the wild, such as Clelia hussani and Urostrophus vautieri. This observation makes it feasible that these populations are small or that they are declining.