cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/pjd-w46-7de
title: †Cancrinella Fredericks, 1928

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jl2-fap-mmg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ttd-vg6-d6r
title: †Hoernesia Laube, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j2m-q8h-w2a
title: Quinqueloculina candeiana d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s46-859-1t5
title: Neolissoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v7w-ffn-8vd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pe3-sb7-kbt
title: †Ammonia atjehensis (van der Vlerk, 1924)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aq8-fxj-pbc
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ng8-th4-g0j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6et-vzq-d80
title: Baculogypsinoides spinosus Yabe & Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v18-y9y-rjr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8vs-552-edb
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m5h-q1w-zx1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pah-dnh-wb0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z1n-y01-55j
title: Saracenaria italica Defrance, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.11794185.v1
title: Species from Hidden patterns of codon usage bias across kingdoms

description: The genetic code is necessarily degenerate with 64 possible nucleotide triplets being translated into 20 amino acids. 18 out of the 20 amino acids are encoded by multiple synonymous codons. While synonymous codons are clearly equivalent in terms of the information they carry, it is now well established that they are used in a biased fashion. There is currently no consensus as to the origin of this bias. Drawing on ideas from stochastic thermodynamics we derive from first principles a mathematical model describing the statistics of codon usage bias. We show that the model accurately describes the distribution of codon usage bias of genomes in the fungal and bacterial kingdoms. Based on it, we derive a new computational measure of codon usage bias—the distance D capturing two aspects of codon usage bias: (i) Differences in the genome-wide frequency of codons and (ii) apparent non-random distributions of codons across mRNAs. By means of large scale computational analysis of over 900 species across two kingdoms of life, we demonstrate that our measure provides novel biological insights. Specifically, we show that while codon usage bias is clearly based on heritable traits and closely related species show similar degrees of bias, there is considerable variation in the magnitude of D within taxonomic classes suggesting that the contribution of sequence-level selection to codon bias varies substantially within relatively confined taxonomic groups. Interestingly, commonly used model organisms are near the median for values of D for their taxonomic class, suggesting that they may not be good representative models for species with more extreme D, which comprise organisms of medical an agricultural interest. We also demonstrate that amino acid specific patterns of codon usage are themselves quite variable between branches of the tree of life, and that some of this variability correlates with organismal tRNA content.
DOI: 10.6084/m9.figshare.11790951.v1
title: Table S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: The KEGG orthology groups and their genes used for phylogenetic tree construction
DOI: 10.6084/m9.figshare.11790951.v3
title: Dataset S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: Datasets used in this study
DOI: 10.6084/m9.figshare.11790951.v5
title: Table S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: The KEGG orthology groups and their genes used for phylogenetic tree construction
DOI: 10.6084/m9.figshare.11790951.v7
title: Dataset S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: Datasets used in this study
DOI: 10.60712/si-id42375.1
title: StrainInfo SI-ID 42375.1

description: StrainInfo dataset 42375 about a strain of Halorubrum lacusprofundi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42376.1
title: StrainInfo SI-ID 42376.1

description: StrainInfo dataset 42376 about a strain of Halovibrio variabilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42377.1
title: StrainInfo SI-ID 42377.1

description: StrainInfo dataset 42377 about a strain of Methylocystis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ex9muq
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Narcissus bicolor L."
 ]
}

 The dataset includes 754 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149860-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42228.1
title: StrainInfo SI-ID 42228.1

description: StrainInfo dataset 42228 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42229.1
title: StrainInfo SI-ID 42229.1

description: StrainInfo dataset 42229 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42230.1
title: StrainInfo SI-ID 42230.1

description: StrainInfo dataset 42230 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42231.1
title: StrainInfo SI-ID 42231.1

description: StrainInfo dataset 42231 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.pu7vma
title: Occurrence Download

description: A dataset containing 3812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3812 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002737-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42314.1
title: StrainInfo SI-ID 42314.1

description: StrainInfo dataset 42314 about a strain of Enterococcus durans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42315.1
title: StrainInfo SI-ID 42315.1

description: StrainInfo dataset 42315 about a strain of Acinetobacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42316.1
title: StrainInfo SI-ID 42316.1

description: StrainInfo dataset 42316 about a strain of Shewanella putrefaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42378.1
title: StrainInfo SI-ID 42378.1

description: StrainInfo dataset 42378 about a strain of Mannheimia granulomatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42379.1
title: StrainInfo SI-ID 42379.1

description: StrainInfo dataset 42379 about a strain of Mannheimia granulomatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.fq98yu
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present",
 "TaxonKey is Etlingera elatior (Jack) R.M.Sm."
 ]
}

 The dataset includes 123 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171874-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42380.1
title: StrainInfo SI-ID 42380.1

description: StrainInfo dataset 42380 about a strain of Comamonas testosteroni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42381.1
title: StrainInfo SI-ID 42381.1

description: StrainInfo dataset 42381 about a strain of Haemophilus aegyptius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42232.1
title: StrainInfo SI-ID 42232.1

description: StrainInfo dataset 42232 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42233.1
title: StrainInfo SI-ID 42233.1

description: StrainInfo dataset 42233 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.cuntq1
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "TaxonKey is Formica rufibarbis Fabricius, 1793",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023440-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42234.1
title: StrainInfo SI-ID 42234.1

description: StrainInfo dataset 42234 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42235.1
title: StrainInfo SI-ID 42235.1

description: StrainInfo dataset 42235 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42317.1
title: StrainInfo SI-ID 42317.1

description: StrainInfo dataset 42317 about a strain of Enterobacter cloacae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.6xbnwa
title: Occurrence Download

description: A dataset containing 1045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx pardinus (Temminck, 1827)"
 ]
}

 The dataset includes 1045 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185198-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42318.1
title: StrainInfo SI-ID 42318.1

description: StrainInfo dataset 42318 about a strain of Neisseria lactamica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42319.1
title: StrainInfo SI-ID 42319.1

description: StrainInfo dataset 42319 about a strain of Moraxella catarrhalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42320.1
title: StrainInfo SI-ID 42320.1

description: StrainInfo dataset 42320 about a strain of Haemophilus influenzae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42382.1
title: StrainInfo SI-ID 42382.1

description: StrainInfo dataset 42382 about a strain of Haemophilus aegyptius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.hzwacx
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus balios Peters, 1973"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023742-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42383.1
title: StrainInfo SI-ID 42383.1

description: StrainInfo dataset 42383 about a strain of Haemophilus aegyptius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42384.1
title: StrainInfo SI-ID 42384.1

description: StrainInfo dataset 42384 about a strain of Haemophilus aegyptius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42385.1
title: StrainInfo SI-ID 42385.1

description: StrainInfo dataset 42385 about a strain of Fusobacterium vincentii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42236.1
title: StrainInfo SI-ID 42236.1

description: StrainInfo dataset 42236 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.cfqad8
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philophyllum tenuifolium (Mitt.) Broth."
 ]
}

 The dataset includes 62 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186149-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42237.1
title: StrainInfo SI-ID 42237.1

description: StrainInfo dataset 42237 about a strain of Escherichia coli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42238.1
title: StrainInfo SI-ID 42238.1

description: StrainInfo dataset 42238 about a strain of Acinetobacter radioresistens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42239.1
title: StrainInfo SI-ID 42239.1

description: StrainInfo dataset 42239 about a strain of Hathewaya proteolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42321.1
title: StrainInfo SI-ID 42321.1

description: StrainInfo dataset 42321 about a strain of Gardnerella vaginalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.z6rjpd
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nolana latipes I.M.Johnst."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026573-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42322.1
title: StrainInfo SI-ID 42322.1

description: StrainInfo dataset 42322 about a strain of Aggregatibacter aphrophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42323.1
title: StrainInfo SI-ID 42323.1

description: StrainInfo dataset 42323 about a strain of Streptococcus gallolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.myaeq3
title: Occurrence Download

description: A dataset containing 465 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 465 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187341-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id42386.1
title: StrainInfo SI-ID 42386.1

description: StrainInfo dataset 42386 about a strain of Halococcus saccharolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42387.1
title: StrainInfo SI-ID 42387.1

description: StrainInfo dataset 42387 about a strain of Salinicoccus roseus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42388.1
title: StrainInfo SI-ID 42388.1

description: StrainInfo dataset 42388 about a strain of Moraxella catarrhalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42240.1
title: StrainInfo SI-ID 42240.1

description: StrainInfo dataset 42240 about a strain of Pantoea agglomerans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id42241.1
title: StrainInfo SI-ID 42241.1

description: StrainInfo dataset 42241 about a strain of Leclercia adecarboxylata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.srqqtq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophryosporus hoppii (B.L.Rob.) R.M.King & H.Rob."
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026599-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.