cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vp6fs
title: Data from: Improvement in nitrogen fixation capacity could be part of the domestication process in soybean

description: Biological nitrogen fixation (BNF) in soybeans is a complex process
 involving the interplay between the plant host and the symbiotic rhizobia.
 As nitrogen supply has a crucial role in growth and development, higher
 nitrogen fixation capacity would be important to achieve bigger plants and
 larger seeds, which were important selection criteria during plant
 domestication by humans. To test this hypothesis, we monitored the
 nitrogen fixation-related performance in 31 cultivated and 17 wild
 soybeans after inoculation with the slow-growing Bradyrhizobium
 diazoefficiens sp. nov. USDA110 and the fast-growing Sinorhizobium
 (Ensifer) fredii CCBAU45436. Our results showed that, in general,
 cultivated soybeans gave better performance in BNF. Electron microscopic
 studies indicated that there was an exceptionally high accumulation of
 poly-β-hydroxybutyrate bodies in bacteroids in the nodules of all wild
 soybeans tested, suggesting that the C/N balance in wild soybeans may not
 be optimized for nitrogen fixation. Furthermore, we identified new
 quantitative trait loci (QTLs) for total ureides and total nodule fresh
 weight by employing a recombinant inbred population composed of
 descendants from a cross between a cultivated and a wild parent. Using
 nucleotide diversity (θπ), divergence index (Fst) and distribution of
 fixed single-nucleotide polymorphisms as parameters, we found that some
 regions in the total ureides QTL on chromosome 17 and the total nodule
 fresh weight QTL on chromosome 12 exhibited very low diversity among
 cultivated soybeans, suggesting that these were traits specially selected
 during the domestication and breeding process.
description: Genotype and Phenotype
 of 96 Recombinant Inbred LinesThe data files contain
 the genotypic and phenotypic information of a recombinant inbred (RI)
 population. This population was obtained by crossing the cultivated
 Glycine max (C08) with the wild type Glycine soja (W05) was adopted from a
 previous study (Qi et al., 2014). In our previous research (Qi et al.,
 2014), a core panel of 96 RI lines was re-sequenced at ~1 X depth to
 generate high-quality single nucleotide polymorphism (SNP) information. An
 array of high-quality SNPs were grouped into 2,757 bin markers distributed
 on the 20 chromosomes. A bin map of 2,992.0 cM in the Kosambi mapping
 function was generated using the bin markers. Biological nitrogen fixation
 related phenotypes of the RILs were collected in controlled environment as
 mentioned in materials and methods.Phenotype and
 Genotype.zip
DOI: 10.5061/dryad.gt678
title: Data from: Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

description: Biological invasions are ‘natural’ experiments that can improve our
 understanding of contemporary evolution. We evaluate evidence for
 population differentiation, natural selection and adaptive evolution of
 invading plants and animals at two nested spatial scales: (i) among
 introduced populations (ii) between native and introduced genotypes.
 Evolution during invasion is frequently inferred, but rarely confirmed as
 adaptive. In common garden studies, quantitative trait differentiation is
 only marginally lower (~3.5%) among introduced relative to native
 populations, despite genetic bottlenecks and shorter timescales (i.e.
 millennia vs. decades). However, differentiation between genotypes from
 the native vs. introduced range is less clear and confounded by nonrandom
 geographic sampling; simulations suggest this causes a high false-positive
 discovery rate (&gt;50%) in geographically structured populations.
 Selection differentials (¦s¦) are stronger in introduced than in native
 species, although selection gradients (¦β¦) are not, consistent with
 introduced species experiencing weaker genetic constraints. This could
 facilitate rapid adaptation, but evidence is limited. For example, rapid
 phenotypic evolution often manifests as geographical clines, but
 simulations demonstrate that nonadaptive trait clines can evolve
 frequently during colonization (~two-thirds of simulations). Additionally,
 QST-FST studies may often misrepresent the strength and form of natural
 selection acting during invasion. Instead, classic approaches in
 evolutionary ecology (e.g. selection analysis, reciprocal transplant,
 artificial selection) are necessary to determine the frequency of adaptive
 evolution during invasion and its influence on establishment, spread and
 impact of invasive species. These studies are rare but crucial for
 managing biological invasions in the context of global change.
description: MetaPCAData file containing standard deviations of population means and latitudes from published common garden studiesSpatialStructure_DataData file containing latitudes and longitudes of populations used in common garden studiesSelection_DataData file containing measurements of selection gradients and differentialsMetaPCA_AnalysisR script with analysis of common garden data and with output for Fig. 1SpatialStructure_AnalysisR script with analysis of spatial structure and with output for Box 1, Fig. 2Selection_AnalysisR script with analysis of selection data and producing Fig. 2ClinesModelStepwise colonization model demonstrating rapid evolution of non-adaptive trait clines, without output in Box 2, Fig. 1
DOI: 10.5061/dryad.35hs3
title: Data from: Avian malaria: a new lease of life for an old experimental model to study the evolutionary ecology of Plasmodium

description: Avian malaria has historically played an important role as a model in the
 study of human malaria, being a stimulus for the development of medical
 parasitology. Avian malaria has recently come back to the research scene
 as a unique animal model to understand the ecology and evolution of the
 disease, both in the field and in the laboratory. Avian malaria is highly
 prevalent in birds and mosquitoes around the world and is amenable to
 laboratory experimentation at each stage of the parasite's life
 cycle. Here, we take stock of 5 years of experimental laboratory research
 carried out using Plasmodium relictum SGS1, the most prevalent avian
 malaria lineage in Europe, and its natural vector, the mosquito Culex
 pipiens. For this purpose, we compile and analyse data obtained in our
 laboratory in 14 different experiments. We provide statistical
 relationships between different infection-related parameters, including
 parasitaemia, gametocytaemia, host morbidity (anaemia) and transmission
 rates to mosquitoes. This analysis provides a wide-ranging picture of the
 within-host and between-host parameters that may bear on malaria
 transmission and epidemiology.
description: data_Pigeault et al
 2015Data were obtained in 14
 different experiments. The data file was created with Microsoft Excel Open
 XML. Data were collected in laboratory. In the one hand, data concern the
 impact of plasmodium infection on its host and its vector. There are data
 on the variance in infection rate in bird, on the impact of plasmodium on
 bird anaemia. Regarding the impact of Plasmodium on mosquitoes, there are
 data on prevalence, parasite burden and the costs induced by Plasmodium on
 mosquitoes' fecundity and longevity. In the other hand, there are
 data on a time series regarding the evolution of birds' parasitaemia
 and gametocytemia maintained in laboratory since 5
 years.
DOI: 10.7910/dvn/vhmwlh
title: Replication Data for: The Electoral Race Card: Voter Fraud Claims, Racial Affective Polarization, and White Americans’ Declining Confidence in Elections

description: Replication Data for: The Electoral Race Card: Voter Fraud Claims, Racial Affective Polarization, and White Americans’ Declining Confidence in Elections
DOI: 10.5061/dryad.3278c
title: Data from: Genomics meets applied ecology: characterizing habitat quality for sloths in a tropical agroecosystem

description: Understanding how habitat quality in heterogeneous landscapes governs the
 distribution and fitness of individuals is a fundamental aspect of
 ecology. While mean individual fitness is generally considered a key to
 assessing habitat quality, a comprehensive understanding of habitat
 quality in heterogeneous landscapes requires estimates of dispersal rates
 among habitat types. The increasing accessibility of genomic approaches,
 combined with field-based demographic methods, provides novel
 opportunities for incorporating dispersal estimation into assessments of
 habitat quality. In this study, we integrated genomic kinship approaches
 with field-based estimates of fitness components and Approximate Bayesian
 Computation (ABC) procedures to estimate habitat-specific dispersal rates
 and characterize habitat quality in two-toed sloths (Choloepus hoffmanni)
 occurring in a Costa Rican agricultural ecosystem. Field-based
 observations indicated that birth and survival rates were similar in a
 sparsely-shaded cacao farm and adjacent cattle pasture-forest mosaic.
 Sloth density was threefold higher in pasture compared to cacao, whereas
 home range size and overlap were greater in cacao compared to pasture.
 Dispersal rates were similar between the two habitats, as estimated using
 ABC procedures applied to the spatial distribution of pairs of related
 individuals identified using 3,431 SNP and 11 microsatellite locus
 genotypes. Our results indicate that crops produced under a sparse
 overstory can, in some cases, constitute lower quality habitat than
 pasture-forest mosaics for sloths, perhaps because of differences in food
 resources or predator communities. Finally, our study demonstrates that
 integrating field-based demographic approaches with genomic methods can
 provide a powerful means for characterizing habitat quality for animal
 populations occurring in heterogeneous landscapes.
description: SNP
 genotypesSNP genotypes for
 individuals used in the ABC model. File is formatted for the program code
 used.SNP_Data.csvMicrosatellite genotypesThe microsatellite genotypes for individuals used in the ABC model.Microsatellite_Data.csvEcology DataThe ecological data used in the ABC model including year captured, life stage, sex and habitat patch the individual was captured in. Time represents the years for the study period with the first year (2010) represented by a zero. Life stage is determined at the time the individual was tracked either 1 for subadult or 2 for adult. Patch represents either cacao (0) or pasture-forest mosaic (1) habitat.Ecology_Data.csv
DOI: 10.5061/dryad.g3925
title: Data from: The ontogeny of fairness in seven societies

description: A sense of fairness plays a critical role in supporting human cooperation.
 Adult norms of fair resource sharing vary widely across societies,
 suggesting that culture shapes the acquisition of fairness behaviour
 during childhood. Here we examine how fairness behaviour develops in
 children from seven diverse societies, testing children from 4 to 15 years
 of age (n = 866 pairs) in a standardized resource decision task. We
 measured two key aspects of fairness decisions: disadvantageous inequity
 aversion (peer receives more than self) and advantageous inequity aversion
 (self receives more than a peer). We show that disadvantageous inequity
 aversion emerged across all populations by middle childhood. By contrast,
 advantageous inequity aversion was more variable, emerging in three
 populations and only later in development. We discuss these findings in
 relation to questions about the universality and cultural specificity of
 human fairness.
description: Ontogeny_fairness_seven_societies_dataLong form data for Blake, McAuliffe, Corbit, Callaghan, Barry, Bowie, Kleutsch, Kramer, Ross, Vongsachang, Wrangham & WarnekenData and R code for The ontogeny of fairness in seven societiesData in long form and R statistical codeOntogeny_fairness_seven_societies_data_code.zip
DOI: 10.5061/dryad.n5fm685
title: Data from: Resistance and recovery of methane-oxidizing communities depends on stress regime and history; a microcosm study

description: Although soil microbes are responsible for important ecosystem functions,
 and soils are under increasing environmental pressure, little is known
 about their resistance and resilience to multiple stressors. Here, we test
 resistance and recovery of soil methane-oxidizing communities to two
 different, repeated, perturbations: soil drying, ammonium addition and
 their combination. In replicated soil microcosms we measured methane
 oxidation before and after perturbations, while monitoring microbial
 abundance and community composition using quantitative PCR assays for the
 bacterial 16S rRNA and pmoA gene, and sequencing of the bacterial 16S rRNA
 gene. Although microbial community composition changed after soil drying,
 methane oxidation rates recovered, even after four desiccation events.
 Moreover, microcosms subjected to soil drying recovered significantly
 better from ammonium addition compared to microcosms not subjected to soil
 drying. Our results show the flexibility of microbial communities, even if
 abundances of dominant populations drop, ecosystem functions can recover.
 In addition, a history of stress may induce changes in community
 composition and functioning, which may in turn affect its future tolerance
 to different stressors.
description: vanKruistum2018_Dryad
DOI: 10.5061/dryad.kj731
title: Data from: Position-dependent hearing in three species of bushcrickets (Tettigoniidae, Orthoptera)

description: A primary task of auditory systems is the localization of sound sources in
 space. Sound source localization in azimuth is usually based on temporal
 or intensity differences of sounds between the bilaterally arranged ears.
 In mammals, localization in elevation is possible by transfer functions at
 the ear, especially the pinnae. Although insects are able to locate sound
 sources, little attention is given to the mechanisms of acoustic
 orientation to elevated positions. Here we comparatively analyse the
 peripheral hearing thresholds of three species of bushcrickets in respect
 to sound source positions in space. The hearing thresholds across
 frequencies depend on the location of a sound source in the
 three-dimensional hearing space in front of the animal. Thresholds differ
 for different azimuthal positions and for different positions in
 elevation. This position-dependent frequency tuning is species specific.
 Largest differences in thresholds between positions are found in Ancylecha
 fenestrata. Correspondingly, A. fenestrata has a rather complex ear
 morphology including cuticular folds covering the anterior tympanal
 membrane. The position-dependent tuning might contribute to sound source
 localization in the habitats. Acoustic orientation might be a selective
 factor for the evolution of morphological structures at the bushcricket
 ear and, speculatively, even for frequency fractioning in the ear.
description: Position dependent
 hearing in three species of bushcricketsRaw data used in:
 Position-dependent hearing in three species of bushcrickets
 (Tettigoniidae, Orthoptera) as Excel spreadsheet. For data analyses,
 thresholds were determined visually as the sound intensity at which
 neuronal activity was seen in response to at least four of the five
 stimulus repetitions. For averaging threshold, sound pressure level data
 were transferred to sound pressure (rel. 20 μPa) and thereafter
 transformed back to dB SPL for visualization.
DOI: 10.7910/dvn/5bujko
title: Enhancing Comorbidity Management in Patients With Hemorrhagic Stroke via an Electronic Health Record-Linked Best Practice Alert: A Pre/Post Study

description: We conducted a prospective cohort study comparing a historical cohort of 314 consecutive patients with primary intracerebral hemorrhage (2016-2019) with a prospective intervention cohort of 296 patients with hemorrhagic stroke (2023-2024) at a single tertiary care center. The intervention was composed of an electronic health record-deployed best practice alert to prompt providers to order low-density lipoprotein cholesterol (LDL-C) and glycated hemoglobin (HbA1c) levels. We compared the cumulative incidence of LDL-C and HbA1c evaluation before and after intervention through Gray's test and assessed the effectiveness of the intervention using a multivariable Fine and Gray model, adjusted for relevant confounders. Finally, we evaluated changes in the treatment intensification of suboptimal LDL-C and HbA1c levels between the 2 periods using χ2 and Fisher exact tests.
DOI: 10.5061/dryad.41s01
title: Data from: Heritability and genetic correlations of personality traits in a wild population of yellow-bellied marmots (Marmota flaviventris)

description: Describing and quantifying animal personality is now an integral part of
 behavioural studies because individually distinctive behaviours have
 ecological and evolutionary consequences. Yet, to fully understand how
 personality traits may respond to selection, one must understand the
 underlying heritability and genetic correlations between traits. Previous
 studies have reported a moderate degree of heritability of personality
 traits but few of these studies have either been conducted in the wild or
 estimated the genetic correlations between personality traits. Estimating
 the additive genetic variance and covariance in the wild is crucial to
 understand the evolutionary potential of behavioural traits. Enhanced
 environmental variation could reduce heritability and genetic correlations
 thus leading to different evolutionary predictions. We estimated the
 additive genetic variance and covariance of docility in the trap,
 sociability (mirror image stimulation), and exploration and activity in
 two different contexts (open-field and mirror image simulation
 experiments) in a wild population of yellow-bellied marmots (Marmota
 flaviventris). We estimated both heritability of behaviours and of
 personality traits and found non-zero additive genetic variance in these
 traits. We also found non-zero maternal, permanent environment, and year
 effects. Finally, we found four phenotypic correlations between traits,
 and one positive genetic correlation between activity in the open-field
 test and sociability. We also found permanent environment correlations
 between activity in both tests and docility and exploration in the MIS
 test. This is one of a handful of studies to adopt a quantitative genetic
 approach to explain variation in personality traits in the wild, and thus,
 provides important insights into the potential variance available for
 selection.
description: jebdryadPersonality data with correpsonding variables in final model.jebpedigPedigree used to estimate quantitatve genetic effects
DOI: 10.5061/dryad.8s21m
title: Data from: Molecular diversity of Germany’s freshwater fishes and lampreys assessed by DNA barcoding

description: This study represents the first comprehensive molecular assessment of
 freshwater fishes and lampreys from Germany. We analysed COI sequences for
 almost 80% of the species mentioned in the current German Red List. In
 total, 1056 DNA barcodes belonging to 92 species from all major drainages
 were used to (i) build a reliable DNA barcode reference library, (ii) test
 for phylogeographic patterns, (iii) check for the presence of barcode gaps
 between species and (iv) evaluate the performance of the barcode index
 number (BIN) system, available on the Barcode of Life Data Systems. For
 over 78% of all analysed species, DNA barcodes are a reliable means for
 identification, indicated by the presence of barcode gaps. An overlap
 between intra- and interspecific genetic distances was present in 19
 species, six of which belong to the genus Coregonus. The Neighbour-Joining
 phenogram showed 60 nonoverlapping species clusters and three singleton
 species, which were related to 63 separate BIN numbers. Furthermore,
 Barbatula barbatula, Leucaspius delineatus, Phoxinus phoxinus and Squalius
 cephalus exhibited remarkable levels of cryptic diversity. In contrast, 11
 clusters showed haplotype sharing, or low levels of divergence between
 species, hindering reliable identification. The analysis of our barcode
 library together with public data resulted in 89 BINs, of which 56% showed
 taxonomic conflicts. Most of these conflicts were caused by the use of
 synonymies, inadequate taxonomy or misidentifications. Moreover, our study
 increased the number of potential alien species in Germany from 14 to 21
 and is therefore a valuable groundwork for further faunistic
 investigations.
description: GERFWF_Alignment_1056This alignment comprises 1056 DNA barcodes belonging to 93 species of freshwater fishes and lampreys from Germany.
DOI: 10.15468/dl.zmdd5u
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mamíferos pequeños en el municipio de Medina, Cundinamarca - Proyecto Colombia Bio"
 ]
}

 The dataset includes 44 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000513-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.36847
title: Data from: Uneven sampling and the analysis of vocal performance constraints

description: Studies of trilled vocalizations provide a premiere illustration of how
 performance constraints shape the evolution of mating displays. In trill
 production, vocal tract mechanics impose a trade-off between syllable
 repetition rate and frequency bandwidth, with the trade-off most
 pronounced at higher values of both parameters. Available evidence
 suggests that trills that simultaneously maximize both traits are more
 threatening to males or more attractive to females, consistent with a
 history of sexual selection favoring high-performance trills. Here, we
 identify a sampling limitation that confounds the detection and
 description of performance trade-offs. We reassess 70 data sets (from 26
 published studies) and show that sampling limitations afflict 63 of these
 to some degree. Traditional upper-bound regression, which does not control
 for sampling limitations, detects performance trade-offs in 33 data sets;
 yet when sampling limitations are controlled, performance trade-offs are
 detected in only 15. Sampling limitations therefore confound more than
 half of all performance trade-offs reported using the traditional method.
 An alternative method that circumvents this sampling limitation, which we
 explore here, is quantile regression. Our goal is not to question the
 presence of mechanical trade-offs on trill production but rather to
 reconsider how these trade-offs can be detected and characterized from
 acoustic data.
description: Wilson et al Appendix
 TableData used to assess
 vocal performance tradeoffs in 70 published datasets (55 within-species
 and 15 between-species).
DOI: 10.15468/dl.fmywny
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myotis myotis",
 "Year 2024-2026"
 ]
}

 The dataset includes 251 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000509-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.