cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20444466.v1
title: Data for "Rothia from the human nose inhibit Moraxella catarrhalis colonization with a secreted peptidoglycan endopeptidase"

description: This repository contains raw and derived data for the manuscript titled "<em>Rothia</em> from the human nose inhibit <em>Moraxella catarrhalis</em> colonization with a secreted peptidoglycan endopeptidase". <br> The raw data includes cell culture assay results, genome sequences, inhibition assay data, and proteomics spectra. <br> The derived data includes antiSMASH output, anvi'o output, BiG-SCAPE output, mothur output, NMDS output. phylogenetic trees, PyParanoid output, and SignalP output. <br> 16S rRNA gene V4 amplicon sequencing data can be found in the Short Read Archive under BioProject accession PRJNA866994. Genome sequences generated from this work are deposited under BioProject accession PRJNA867425. <br>
DOI: 10.6084/m9.figshare.22699801.v1
title: Annotation Vungu_v1.fa

description: Genome annotation file in gff format for Diceros bicornis (Vungu_v1.fa). The annotation was lifted over from ASM1363453v1.
DOI: 10.6084/m9.figshare.28572533.v1
title: Supplementary Material for: Topical losartan treatment of herpes simplex virus- or varicella zoster virus-induced corneal scarring: A case series

description: Introduction: Topical losartan has emerged as a promising therapeutic option for preventing and treating corneal scarring fibrosis. Its mechanism of action involves the inhibition of ERK-mediated signaling in the non-canonical TGF beta pathways, promoting apoptosis of myofibroblasts and facilitating a return of corneal transparency. While numerous studies in rabbits and several human case reports have demonstrated its efficacy and safety, published data on its use in clinical scenarios remain limited. This study presents three cases where topical losartan successfully treated corneal scarring induced by herpes simplex virus (HSV) or varicella zoster virus (VZV) keratitis. 
Case Presentations: Three patients (ages 40, 38, 15 years) with corneal scarring and vision loss from HSV or VZV keratitis were treated with topical 0.8 mg/ml losartan six times a day for four to nine months, depending on the clinical response, after failing traditional management with corticosteroids. Best spectacle-corrected vision and slit lamp corneal opacity improved in each case. Anterior segment OCT documented improved stromal opacity in one case.
Conclusions: Topical losartan, a known inhibitor of fibrotic TGF beta signaling, is potentially an effective alternative in the treatment of stromal scarring fibrosis caused by corneal HSV and VZV infections. Patients with HSV- or VZV-keratitis-induced corneal scarring may be ideal candidates for planned clinical trials of the efficacy and safety of topical losartan treatment.
DOI: 10.17632/7tv8yb5647
title: Imagery datasets for photobiological lighting analysis of architectural models with shading panels (No. 2)

description: This repository includes imagery datasets captured inside an architectural model aimed at exploring the impact of shading panels on photobiological lighting parameters. The architectural model represents a generic space at 1:10 scale with a single side fully glazing façade used to install shading panels. The datasets present interior lighting conditions under different shading configurations in terms of surface colors and glossiness, horizontal and vertical orientations and upwards, downwards, and left/right inclinations of panels, V-shape opening, low to high densities, and top and bottom positions at the window. The experiments of shading panel configurations were conducted under four to six different exterior overcast daylighting conditions simulated with very cool to very warm color temperatures and high to low intensities inside an artificial sky chamber.  The dataset is compiled as part of a doctoral dissertation in architecture at Laval University authored by Mojtaba Parsaee, supervised by Claude MH Demers, Marc Hébert, Jean-François Lalonde. The description of the datasets and experimental conditions and procedures are fully explained in the companion paper published with the same title in Data In Brief.
DOI: 10.17632/hwb7dgcmfx
title: Exploring the impact of physico-chemical elements on phytoplankton distribution adjacent to the Digha-Talsari coastline along the Bay of Bengal, India

description: This is a qualitative and quantitative data. There are two types of data one is physicochemical raw data which is gathered from study site and another type of data is cell count data which is generated from microscpic observation. All physicochemical parameters and cell count data were interpreted with the help of PAST software version 4.03. CCA was performed to determine the relationship between phytoplankton taxa and physicochemical parameters. Karl Pearson's Correlation coefficients were calculated between physicochemical parameters and total phytoplankton abundance and p-value less than 0.05. The data are collected every month and figured out in every season.
DOI: 10.6084/m9.figshare.19752856.v1
title: An improved global land cover mapping in 2015 with 30 m resolution (GLC-2015) based on a multi-source product fusion approach

description: The GLC-2015 is organized by a total of 1507 geographical grids of 4-degree. The shapefile of 4-degree grids can be found in "fishnet_world.zip". Each image of the GLC-2015 dataset is named as “GLC-2015_i” (i represents the id of the 4-degree grid) in GeoTIFF format. For each pixel, values from 10 to 100 represent the land cover class, while 0 and 250 invalid fill value.
DOI: 10.6084/m9.figshare.21350316.v1
title: Full dataset for Rondeau, Willis Chan, and Pindar (2022)

description: Complete dataset of bee species compiled for<strong> Rondeau, Willis Chan, and Pindar (2022). </strong>See 'Materials and methods' in the original publication for details on data compilation. <strong>Original publication</strong>: Rondeau S, Willis Chan DS and Pindar A (2022) Identifying wild bee visitors of major crops in North America with notes on potential threats from agricultural Practices. Front. Sustain. Food Syst. 6:943237. doi: 10.3389/fsufs.2022.943237
DOI: 10.6084/m9.figshare.26042341.v1
title: Citations for data used

description: This file gives citations for the studies who's data is used in our work.
DOI: 10.6084/m9.figshare.26241032.v2
title: Case data for active distribution network: Optimal dispatching with uncertainties based on affine arithmetic.

description: <b>Affine Arithmetic (AA) </b><b>is</b><b> </b><b>an</b><b> effective interval analysis method to deal with the uncertainties of the power systems. However, </b><b>pre</b><b>vious research on AA-based optimal problems is challenging to capture the uncertainties of EV and the cumulative effect of energy storage systems. In addition, the reformulated AA model increases massive variables and constraints, resulting in a heavy computational burden. In this paper, an effective AA-based economic dispatch (AAED) method for active distribution network with EVs and ESSs is proposed considering uncertainties. Specifically, an EV Charging load interval (CLI) model is developed to efficiently depict the plug-in/plug-out time and initial/target energy randomness. Confidence level is defined to avoid the </b><b>ov</b><b>erly conservativeness of the CLI model. An</b><b> </b><b>ESS model is formulated in the AA domain to represent the cumulative effect caused by multiple-period </b><b>uncertainties</b><b>, ensuring the accuracy of the state of charge</b><b> bound. Furthermore, a fast-solving strategy is designed to improve the computation efficiency of the AA</b><b>ED</b><b> model without loss of accuracy. Massive state variables and corresponding constraints are eliminated by the derived </b><b>analytical partial deviation formulation, representing the mapping relationship between the state variables and the uncertain resources. The simulation results demonstrate the effectiveness of the proposed model and method.</b>
DOI: 10.6084/m9.figshare.679840.v1
title: Spectral and time domain optical coherence tomography images before and after correction for patients with age-related macular degeneration

description: ID: ID for each study eye Gender: 1 = Female; 2 = Male Study_Eye: 1=OD; 2=OS Diagnosis: Diagnosis of Non-neovascular AMD (NNV-AMD) or Neovascular AMD (NV-AMD) Diagnosis_Code: 1 = NV-AMD; 2= NNV-AMD Each subfield column is broken down into three parts. For example: (SP)[cs]{1} ( ) -The machine the image was taken on: Sp = Spectralis; C = Cirrus; S = Stratus. [ ] -The subfield of the image based on the ETDRS grid. CS = Central 1mm; NS = Inner nasal; SS = Inner superior; TS = Inner temporal; IS = Inner inferior; N2S = Outer nasal; S2S = Outer superior; T2S = Outer temporal; I2S = Outer inferior. { } – The image number. 1 and 2 represents either the first or the second image before correction. 3 and 4 are the same images after manual correction, respectively.
DOI: 10.17632/r6tbd7ryn3
title: Design Methodology of a Low-Cost Solar Simulator

description: Raw data and data analysis for the Design Methodology of a Low-Cost Solar Simulator, as published in the relevant research paper.
DOI: 10.6084/m9.figshare.14278790.v1
title: JUDD-OFELT ANALYSIS OF Tb3+ AND UPCONVERSION STUDY IN Yb3+-Tb3+ CO-DOPED CALIBO GLASSES

description: We report on the study of the spectroscopic properties in Ytterbium-Terbium (Yb3+-Tb3+) co-doped calcium lithium borate (CaLiBO) glasses, with the study’s focus being on the upconversion process. Intensity parameters Ωλ for CaLiBO:Tb3+ are determined by the Judd-Ofelt method to be Ω2 = 15.5 × 10-20 cm2, Ω4 = 1.90 × 10-20 cm2 and Ω6 = 3.69 × 10-20 cm2. We have also obtained electric-dipole (and magnetic-dipole) radiative transition probabilities, branching ratios, and lifetime for the Tb3+:5D4 and 5D3 levels. In addition, an evaluation of the upconversion processes by luminescence and time-resolved spectroscopy were carried out. The upconversion rise and decay times, energy transfer probability from Yb3+ to Tb3+ ions, and the efficiency of the processes that depopulate the Tb3+:5D4 level after resonantly pumping the Yb3+:2F5/2 level were estimated. Our results showed that a cooperative energy transfer (CET) from two Yb3+ ions to one Tb3+ ion is the origin of the Tb3+ upconversion luminescence in the visible region. While, CET followed of the cross relaxation or/and excited state absorption is responsible for the upconversion luminescence in the ultraviolet region.
DOI: 10.6084/m9.figshare.21118753.v4
title: NAS sequences in bryophyte genomes

description: Independent horizontal microbial gene transfers with replacement in plants.
DOI: 10.6084/m9.figshare.25304056.v2
title: <b>Deep Learning Technique</b>

description: The findings of this research can potentially change healthcare practices concerning lung cancer by providing chances for improvements in early diagnosis and treatment.
DOI: 10.6084/m9.figshare.28660934.v2
title: Sequencing statistics of lcWGS and ddRADseq experiments with DO mice

description: Distribution of the number of mapped reads, sequencing coverage, percent of the genome’s bases covered by sequencing reads, and expected coverage by sequencing reads at bases with mapped reads among all samples.
DOI: 10.6084/m9.figshare.28925423.v1
title: 175888

description: The causes of poor performance in rural primary schools.
DOI: 10.6084/m9.figshare.3553020.v1
title: Appendix A. Details on functions, parameters, and analyses.

description: Details on functions, parameters, and analyses.
DOI: 10.6084/m9.figshare.5553505.v2
title: SPCAM Preprocessed file with date, time, lat and lon info

description: SPCAM preprocessed file for CBRAIN with additional dimensions --&gt; CNNs and RNNs<br>Additionally with new mean and std files for normalization.
DOI: 10.17632/rd49txv97j
title: Quantification of urinary albumin and -creatinine: A comparison study of two analytical methods and their impact on albumin to creatinine ratio

description: Raw data of the research work
DOI: 10.6084/m9.figshare.14412845.v5
title: Images for real-time measurement

description: the umsampled images for real-time measurement.
DOI: 10.6084/m9.figshare.21267363.v1
title: Identifying the current and future status of freshwater connectivity corridors in the Amazon Basin

description: This repository contains supplementary data and technical documentation for the research article by B. Caldas, M.L. Thieme, N. Shahbol, M. Eduarda Coelho, G. Grill, P.A. Van Damme, R. Aranha, C. Cañas, C. Fagundes, N. Frale, E.E. Herrera-Collazos, C. Jézéquel, M. Montoya, F. Mosquera- Guerra, M. Oliveira-da-Costa, M. Paschoalini, P. Petry, T. Oberdorff, F. Trujillo, P.A. Tedesco, M. Lambert Ribeiro. <strong>Identifying the current and future status of freshwater connectivity corridors in the Amazon Basin</strong>. <em>Conservation Science and Practice</em>. DOI: 10.1111/csp2.12853
DOI: 10.17632/2v288r7k2j
title: Linea alba response to exercise in parous women: research data from a cross-sectional study

description: This dataset supports the cross-sectional study titled "Immediate Effect of Four Exercises on Linea Alba Thickness, Distortion and Inter-Recti Distance in Parous Women." The study investigated the immediate biomechanical response of the abdominal wall—specifically inter-recti distance (IRD), linea alba thickness, and deformation—during four common abdominal exercises: crunch, abdominal drawing-in maneuver (ADIM), pelvic floor muscle contraction (PFMC), and the de Gasquet basic exercise.

Data include ultrasound measurements taken from 54 parous women at both supra- and infraumbilical levels. Measurements comprise IRD, linea alba thickness, and a distortion index, as well as transversus abdominis and internal oblique activation measured using simultaneous ultrasound. The dataset also contains participant metadata such as age, body mass index (BMI), number of deliveries, presence of urinary symptoms, and low back pain severity.
DOI: 10.17632/tdx48fny59
title: Data for: The Dairi SEDEX Zn+Pb+Ag deposit (North Sumatra, Indonesia): Insights from mineralogy and sulfur isotope systematics

description: LA-ICP-MS data of trace elements in pyrite and pyrrhotite from the Dairi deposit
DOI: 10.6084/m9.figshare.28538774.v1
title: Supplementary Material for: Toward a Comprehensive Overview of Cytogenomics in the Galliformes: a Focus on Western Capercaillie and Hazel Grouse Karyotypes

description: Introduction: The Phasianidae family belongs to Galliformes, which is basal to other Neognathae. Despite the availability of chromosome-level genome assemblies for many Phasianidae species, the karyotypes for some species remain poorly investigated.
Methods: In this study, we described karyotypes using classical, differential, and molecular cytogenetic (BAC-FISH) methods. To compare chromosome-level genomes of 10 Galliformes species dot-plot analysis was performed.
Results: We provide the first comprehensive description of the karyotype of two Tetraonini species: the western capercaillie (Tetrao urogallus, 2n=78) and the hazel grouse (Tetrastes bonasia, 2n=80). We mapped chicken BAC clones (CHORI-261) with known coordinates to the chromosomes of the western capercaillie and Japanese quail (Coturnix japonica, 2n=78) to anchor physical chromosomes to chromosome-level assemblies. Finally, we performed dot-plot comparisons of ten available chromosome-level genome assemblies to identify inter- and intrachromosomal rearrangements in Galliformes.
Conclusion: We show that the centromeric fusion of orthologs of GGA6 and GGA8 is shared by all analyzed species in the tetraonid clade: T. urogallus, T. bonasia, and Lagopus muta. We identified linage-specific intrachromosomal rearrangements on chromosomes orthologs to chicken Z (Phasianinae and Tetraoninae), 7 and 12 (Phasianinae and Tetraoninae), 5 and 13 (Perdicinae), 22 (Alectoris). Our study shows that analysis of the genomes of several closely related species allows us to identify chromosomal rearrangements characteristic of individual evolutionary lines.
DOI: 10.6084/m9.figshare.28875569.v1
title: Shared data of the research article: Biodiversity-rich recreational areas near cities as a nature-based mental health solution

description: "Travel_time_of_577_major_cities.csv": This dataset contains the maximum, minimum, and mean travel time from all pixel locations within selected major cities (populations &gt; 1 million) to the nearest Protected Areas (PAs), Key Biodiversity Areas (KBAs), and Intact Forest Landscapes (IFLs)
DOI: 10.6084/m9.figshare.28943864.v1
title: Microsatellite data of<i> N. vespilloides, N. littoralis</i> and <i>O. throracicum</i>

description: Microsatellite data of<i> N. vespilloides, N. littoralis</i> and <i>O. throracicum</i>
DOI: 10.4225/03/5719cebc59438
title: TESA example data

description: The TMS-EEG signal analyser (TESA) is an open source extension for EEGLAB that includes functions necessary for cleaning and analysing TMS-EEG data. Both EEGLAB and TESA run in Matlab (r2015b or later). The attached files are example data files which can be used with TESA. To download TESA, visit here: http://nigelrogasch.github.io/TESA/ To read the TESA user manual, visit here: https://www.gitbook.com/book/nigelrogasch/tesa-user-manual/details<br> <b>File info:</b> <i>example_data.set</i> WARNING: file size = 1.1 GB. A raw data set for trialling TESA. Load the data file in to EEGLAB using the existing EEGLAB data set functions. Note that both the .fdt and .set files are required. <i>example_data_epoch_demean.set</i> File size = 340 MB. A partially processed data file of smaller size corresponding to step 8 of the analysis pipeline in the TESA user manual. Channel locations were loaded, unused electrodes removed, bad electrodes removed, epoched (-1000 to 1000 ms) and demeaned (baseline correct -1000 to 1000). Load the data file in to EEGLAB using the existing EEGLAB data set functions. Note that both the .fdt and .set files are required. <i>example_data_epoch_demean_cut_int_ds.set</i> File size = 69 MB. A further processed data file even smaller in size corresponding to step 11 of the analysis pipeline in the TESA user manual. In addition to the above steps, data around the TMS pulse artifact was removed (-2 to 10 ms), replaced using linear interpolation, and downsampled to 1,000 Hz. Load the data file in to EEGLAB using the existing EEGLAB data set functions. Note that both the .fdt and .set files are required. <b><br></b><b>Example data info:</b> Monophasic TMS pulses (current flow = posterior-anterior in brain) were given through a figure-of-eight coil (external diameter = 90 mm) connected to a Magstim 200<sup>2</sup> unit (Magstim company, UK). 150 TMS pulses were delivered over the left superior parietal cortex (MNI coordinates: -20, -65, 65) at a rate of 0.2 Hz ± 25% jitter. TMS coil position was determined using frameless stereotaxic neuronavigation (Localite TMS Navigator, Localite, Germany) and intensity was set at resting motor threshold of the first dorsal interosseous muscle (68% maximum stimulator output). EEG was recorded from 62 TMS-specialised, c-ring slit electrodes (EASYCAP, Germany) using a TMS-compatible EEG amplifier (BrainAmp DC, BrainProducts GmbH, Germany). Data from all channels were referenced to the FCz electrode online with the AFz electrode serving as the common ground. EEG signals were digitised at 5 kHz (filtering: DC-1000 Hz) and EEG electrode impedance was kept below 5 kΩ. <br>
DOI: 10.6084/m9.figshare.15028749.v1
title: Supplementary Material for: FISH-Based Karyotype Analyses of Four <b><i>Dracaena</i></b> Species

description: The genus <i>Dracaena</i> is the main source of dragon’s blood, which is a plant resin and has been used as traditional medicine since ancient times in different civilizations. However, the chromosome numbers and karyotypes present in this genus remain poorly understood. In this study, fluorescence in situ hybridization (FISH) using oligonucleotide probes for ribosomal DNAs (5S and 45S rDNA) and telomeric repeats (TTTAGGG)<sub>3</sub> was applied to analyze 4 related species: <i>Dracaena terniflora</i> Roxb., <i>Dracaena cambodiana</i> Pierre ex Gagnep., Aizong (<i>Dracaena</i> sp.), and <i>Dracaena cochinchinensis</i> (Lour.) S.C. Chen. In all 4 species, both 5S and 45S rDNA showed hybridization signals in the paracentromeric region of a pair of chromosomes; the sizes of the 45S rDNA signals were larger than those of the 5S rDNA. Importantly, the telomeric repeat signals were located in the telomeric regions of almost all chromosomes. The results indicated that the chromosome number of all 4 <i>Dracaena</i> species is 2n = 40, and the lengths of the mitotic metaphase chromosomes range from 0.99 to 2.98 μm. Our results provide useful cytogenetic information, which will be beneficial to future studies in genome structure of the genus <i>Dracaena</i>.
DOI: 10.6084/m9.figshare.24145413.v1
title: <b>Uncovering the Truth Behind Retracted Medical Articles: An Analysis on the Studies of Medical Retractions</b>

description: This is the list of publications that were utilized in the retraction study; it contains bibliographic information as well as the findings from the research reports that were obtained for the study.
DOI: 10.6084/m9.figshare.25721409.v1
title: <b>DMEOI: Dual-modal edible oil impurity dataset</b>

description: 数据集由14520张事件图像和全图图像组成，并有两种方式进行标注。数据集中包括五种常见的食用油和四种典型的杂质。DMEOI数据集可用于单模态或双模态的液体杂质检测。
DOI: 10.6084/m9.figshare.28003040.v5
title: Ocean extremes as a stress test for marine ecosystems and society [Dataset]

description: This database compiles a list of biological, physical and social impacts identified globally during the extreme marine heatwaves of 2023 and 2024. It includes published literature, news articles and social media reports
DOI: 10.6084/m9.figshare.14672250.v1
title: Functional traits driving species role in the structure of terrestrial vertebrate scavenger networks

description: Data used in the article:Sebastián-González et al. (2021) Functional traits driving species role in the structure of terrestrial vertebrate scavenger networks. Ecology<br>Includes:- Network traits at species level (normalised degree and paired nested degree) of each species in each scavenger assemblage.- Database with the species functional traits- Reference list of the database with the species functional traits
DOI: 10.6084/m9.figshare.28587665.v1
title: data.xlsx

description: Digitalization and Greening Enable Resilience
DOI: 10.6084/m9.figshare.28715375.v1
title: LIBS-160K

description: Radionuclide bone scan is one of the most important modalities for early diagnosis of malignant bone metastases. Despite many computer-assisted bone scanning diagnostic studies have been proposed to solve the problem of time-consuming and laborious manual diagnosis, the absence of publicly accessible data and benchmark has hindered research on foundational pre-training models in this field. To address this gap, we present LIBS-160K, a large-scale image-text paired bone scan dataset comprising 160,362 bone scan images from 6,586 patients. Each image is accompanied by corresponding diagnostic texts in both Chinese and English with image classification labels. Furthermore, the bone scan language–image pre-training (BoneSLIP) model is proposed, which leverages both vision and language to better comprehend bone scan images and text. BoneSLIP achieves good results on various sub-tasks such as bone metastasis prediction, differentiate anatomical regions and image-text retrieval. Our study proposes the first large-scale public dataset of bone scan image-text pairs and vision-language model, providing a foundation for the application of multimodal foundation models in the field of computer-aided bone scan analysis.