cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26025/1912/26314
title: The rheological behavior of CO2 ice: application to glacial flow on Mars

description: Vast amounts of solid CO2 reside in topographic basins of the south polar layered deposits (SPLD) on Mars and exhibit morphological features indicative of glacial flow. Previous experimental studies showed that coarse-grained CO2 ice is 1–2 orders of magnitude weaker than water ice under Martian polar conditions. Here we present data from a series of deformation experiments on high-purity, fine-grained CO2 ice over a broader range of temperatures than previously explored (158–213 K). The experiments confirm previous observations of highly non-linear power-law creep at larger stresses, but also show a transition to a previously-unseen linear-viscous creep regime at lower stresses. We examine the viscosity of CO2 within the SPLD and predict that the CO2-rich layers may be stronger than previously thought. We also predict that CO2 ice flows much more readily than H2O ice on steep flanks of SPLD topographic basins, allowing the CO2 to pond as observed.
DOI: 10.6084/m9.figshare.13096517.v1
title: Datasets - Perception of RAS-produced Fish – The View of Private Consumers and Fine Dining Chefs in Germany

description: The data in these datasets has been collected for and is the basis of the publication titled "Perception of RAS-produced Fish – The View of Private Consumers and Fine Dining Chefs in Germany".<br>The data has been collected through surveys and the basis for the questionnaire design utilized priciples from the theory of planned behavior as well as multi-attribute attitude models.<br>
DOI: 10.5281/zenodo.4091427
title: SLR Artifacts - CONTINUOUS INTEGRATION QUALITY IMPACTS

description: SLR Artifacts - CONTINUOUS INTEGRATION QUALITY IMPACTS - ODS file SLR - Studies.ods containing the selected papers in each research step.<br> - ODS file SLR - Claims.ods containing the extracted claims in the papers, the coding process and themes.<br> - SQL file to restore a relational database with the relations: studies (included ones), claims, codes, themes, and authors.
DOI: 10.6084/m9.figshare.13096538
title: Colonization/Extinction events, rates and turnover (6 methods)

description: This file contains estimates of number of colonizations (COL) and local extinctions (EXT), the resultant species richness (SR), cumulative colonizations to calculate colonization rate (CR), cumulative extinctions to calculate extinction rate (ER), and turnover (TOV: sum of COL + EXT divided by SR from present + previous year) for each bank, in each year, for all fish species (pred + meso + prey), for each of 6 methods of estimating these events/rates. See the Supplementary Material for the manuscript for a detailed explanation of each each method. See READ ME tab for column descriptions.
DOI: 10.6084/m9.figshare.13096538.v1
title: Colonization/Extinction events, rates and turnover (6 methods)

description: This file contains estimates of number of colonizations (COL) and local extinctions (EXT), the resultant species richness (SR), cumulative colonizations to calculate colonization rate (CR), cumulative extinctions to calculate extinction rate (ER), and turnover (TOV: sum of COL + EXT divided by SR from present + previous year) for each bank, in each year, for all fish species (pred + meso + prey), for each of 6 methods of estimating these events/rates. See the Supplementary Material for the manuscript for a detailed explanation of each each method. See READ ME tab for column descriptions.
DOI: 10.5281/zenodo.4090965
title: Typology of antipassive coding patterns. Data

description: MS-DOS CSV files with the data that have been used in the paper <strong>Typology of antipassive coding patterns </strong>by<strong> </strong>Ilja A. Seržant, Katarzyna Maria Janić, Darja Dermaku, Oneg Ben Dror.
DOI: 10.5281/zenodo.4090964
title: Typology of antipassive coding patterns. Data

description: MS-DOS CSV files with the data that have been used in the paper <strong>Typology of antipassive coding patterns </strong>by<strong> </strong>Ilja A. Seržant, Katarzyna Maria Janić, Darja Dermaku, Oneg Ben Dror.
DOI: 10.5281/zenodo.4091450
title: Circular RNA circNINL promotes breast cancer progression through activating β-catenin signaling via miR-921/ADAM9 axis

description: Data for "Circular RNA circNINL promotes breast cancer progression through activating β-catenin signaling via miR-921/ADAM9 axis".
DOI: 10.6073/pasta/209b06028fc6d3ce8e6351ee68e0282b
title: Using Biodiversity Data to Assess Species-Habitat Relationships in Glacier National Park, Montana

description: Biodiversity surveys are becoming increasingly popular. However, standard analysis techniques for these data have not yet been developed. This paper explores the use of multivariate ordination techniques for assessing species-habitat relationships using biodiversity data. The research was conducted in Glacier National Park, Montana, and birds and butterflies were chosen as the taxonomic groups of study. Biodiversity assessment sites were established through a range of habitats and monitored from 1987 through 1989. Presence/absence sampling over the total number of sampling sites was used to classify species commonness and rarity. Approximately 86% of the historically recorded butterflies and 70% of the historically recorded bird species have been observed in the 3 yr of sampling. During the 3 yr of this study there was a striking continuity of species richness per site. There was also a striking overlap between the sites that support high species diversity and sites that support rare species. Principal components analysis and cluster analysis worked well in discerning species-habitat relationships. Elevation, structural diversity of the site, and moisture were the major factors explaining species distributions. A chi-square analysis also provided some insights into species-habitat relationships, showing birds were more habitat specific than butterflies. Habitat diversity analyses demonstrated a positive but non-significant correlation between remotely sense spectral-class diversity of a site and species richness for both birds and butterflies. Aspect, slope and elevation diversity had a negative or negligible relationship with species richness.
DOI: 10.21227/5sqy-cd10
title: Baseline

description: a baseline w correct scale
DOI: 10.6073/pasta/222532f38cb2e996244a60be7d048261
title: Using Biodiversity Data to Assess Species-Habitat Relationships in Glacier National Park, Montana

description: Biodiversity surveys are becoming increasingly popular. However, standard analysis techniques for these data have not yet been developed. This paper explores the use of multivariate ordination techniques for assessing species-habitat relationships using biodiversity data. The research was conducted in Glacier National Park, Montana, and birds and butterflies were chosen as the taxonomic groups of study. Biodiversity assessment sites were established through a range of habitats and monitored from 1987 through 1989. Presence/absence sampling over the total number of sampling sites was used to classify species commonness and rarity. Approximately 86% of the historically recorded butterflies and 70% of the historically recorded bird species have been observed in the 3 yr of sampling. During the 3 yr of this study there was a striking continuity of species richness per site. There was also a striking overlap between the sites that support high species diversity and sites that support rare species. Principal components analysis and cluster analysis worked well in discerning species-habitat relationships. Elevation, structural diversity of the site, and moisture were the major factors explaining species distributions. A chi-square analysis also provided some insights into species-habitat relationships, showing birds were more habitat specific than butterflies. Habitat diversity analyses demonstrated a positive but non-significant correlation between remotely sense spectral-class diversity of a site and species richness for both birds and butterflies. Aspect, slope and elevation diversity had a negative or negligible relationship with species richness.
DOI: 10.21227/8k4y-0w23
title: dtai1

description: averages
DOI: 10.6084/m9.figshare.7387130
title: Generic Object Decoding

description: Here we provide preprocessed fMRI data and image features from Horikawa & Kamitani (2017) Generic decoding of seen and imagined objects using hierarchical visual features. Nat Commun.<br><br>Raw (unpreprocessed) fMRI data are available at OpenNeuro.<br><br>Analysis demo code is available at GitHub.<br><br>History:<br><br>2020-10-16 fMRI data preprocessed with fmriprep were updated (Subject*_ImageNetTraining.h5, Subject*_ImageNetTest.h5, and Subject*_Imagery.h5).<br>2020-07-27 'category_index' and 'image_index' in fMRI data files (Subject*.h5) were fixed.<br><br>2019-05-08 fMRI data mat files were replaced with h5 files.<br><br>
DOI: 10.5517/ccdc.csd.cc1zdxfq
title: CCDC 1829664: Experimental Crystal Structure Determination

description: Related Article: Jun-Wu Tian, Ya-Pan Wu, Yong-Shuang Li, Jun-Hua Wei, Jing-Wei Yi, Shuang Li, Jun Zhao, Dong-Sheng Li|2019|Inorg.Chem.|58|5837|doi:10.1021/acs.inorgchem.9b00202
DOI: 10.5517/ccdc.csd.cc1zk4m9
title: CCDC 1833731: Experimental Crystal Structure Determination

description: Related Article: Dongying Shi, Rui Zheng, Chun-Sen Liu, Di-Ming Chen, Junwei Zhao, Miao Du|2019|Inorg.Chem.|58|7229|doi:10.1021/acs.inorgchem.9b00206
DOI: 10.5281/zenodo.4019965
title: Synthetic Noisy Reads Generated from Human Genomes

description: This repository contains datasets with size 200K, 400K and 1 Million noisy reads generated from 5000 transcripts of GTcenters.fasta file. The assigned task is to recover the ground-truth transcripts (GTcenters) based on the given noisy reads.
DOI: 10.5281/zenodo.4019964
title: Synthetic Noisy Reads Generated from Human Genomes

description: This repository contains datasets with size 200K, 400K and 1 Million noisy reads generated from 5000 transcripts of GTcenters.fasta file. The assigned task is to recover the ground-truth transcripts (GTcenters) based on the given noisy reads.
DOI: 10.7284/136782
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE20-05 using a Hawaii UHDAS instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136780
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE20-05 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136783
title: Fluorometer data collected during research cruise PE20-05 using a WET Labs ECO-FL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136781
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE20-05 using a Ashtech ADU800 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136784
title: Gyrocompass data collected during research cruise PE20-05 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3968269
title: Heritability analysis of the 38 cancers in the UK Biobank

description: The dataset includes genome-wide and gene-level heritability analyses of the 38 cancers in the UK Biobank, using the Bayesian Gene HERitability Analysis (BAGHERA) method. The dataset provides also enrichment analyses results for cancer heritability genes with respect to Gene Ontology terms and cancer signatures. A detailed description of the dataset is provided in the MANIFEST.md file.
DOI: 10.7284/136785
title: Meteorological Station data collected during research cruise PE20-05 using a RM Young 92000 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3905420
title: 384 Phenopackets

description: GA4GH Phenopackets (https://github.com/phenopackets/phenopacket-schema) representing 384 individuals described in published case reports with Human Phenotype Ontology terms and causal genetic variants.
DOI: 10.5281/zenodo.3968268
title: Heritability analysis of the 38 cancers in the UK Biobank

description: The dataset includes genome-wide and gene-level heritability analyses of the 38 cancers in the UK Biobank, using the Bayesian Gene HERitability Analysis (BAGHERA) method. The dataset provides also enrichment analyses results for cancer heritability genes with respect to Gene Ontology terms and cancer signatures. A detailed description of the dataset is provided in the MANIFEST.md file.
DOI: 10.5281/zenodo.3826697
title: Supplementary Datasets for dadasnake workflow

description: This dataset contains configuration and results files for the proof-of-principle of the dadasnake pipeline. Includes tables with the composition of ground-truth data or mock-communities. dadasnake wraps pre-processing of sequencing reads, delineation of exact sequencing variants using the favorably benchmarked, widely-used the DADA2 algorithm, taxonomic classification and post-processing of the resultant tables, and hand-off in standard formats, into a user-friendly, one-command Snakemake pipeline. The suitability of the provided default configurations is demonstrated using mock-community data from bacteria and archaea, as well as fungi. By use of Snakemake, dadasnake makes efficient use of high-performance computing infrastructures. Easy user configuration guarantees flexibility of all steps, including the processing of data from multiple sequencing platforms. dadasnake facilitates easy installation via conda environments. dadasnake is available at https://github.com/a-h-b/dadasnake .
DOI: 10.7284/136786
title: Meteorological Station data collected during research cruise PE20-05 using a RM Young 92000 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3905419
title: 384 Phenopackets

description: GA4GH Phenopackets (https://github.com/phenopackets/phenopacket-schema) representing 384 individuals described in published case reports with Human Phenotype Ontology terms and causal genetic variants.
DOI: 10.5281/zenodo.3497584
title: Statistical Methods for Identifying Sequence Motifs Affecting Point Mutations

description: Scripts and derived data for the indicated paper. Links to the original data and library source code used to generate this material. Inflate the ENU_mutation_classification.tar.gz archive, remove the ENU_mutation_classification/classifier directory (this will be replaced). Move all others archives into the ENU_mutation_classification directory and inflate them.
DOI: 10.5281/zenodo.3524201
title: Human sequence alignment data set used for analysis of SPDI algorithm and tools

description: Collection of alignment segments produced on October 30, 2019. The ADS currently consists of over 2,680,000 pairwise alignment segments generated from over 350,000 distinct input sequences. Old assembly to current Genome Reference Consortium (GRC) (Church et al., 2011) primary assemblies (e.g. GRCh36(hg18) or GRCh37(hg19) with GRCh38(hg38)) Patches, alternative loci, or pseudoautosomal regions (PAR) to GRC primary assembly RefSeq (O’Leary et al., 2016) and select GenBank (Benson et al., 2018) transcripts to selected RefSeq genomic regions, also known as RefSeqGene (NG), a member of the Locus Reference Genome (LRG) collaboration (Dalgleish et al., 2010). Current RefSeq transcripts (NM/NR/XM/XR) and RefSeq genomic regions (NG) to the latest Assembly Previous versions of NG and RefSeq transcripts (NM/NR) to GRC primary assembly
DOI: 10.7284/136779
title: Transmissometer data collected during research cruise PE20-05 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3497583
title: Statistical Methods for Identifying Sequence Motifs Affecting Point Mutations

description: Scripts and derived data for the indicated paper. Links to the original data and library source code used to generate this material. Inflate the ENU_mutation_classification.tar.gz archive, remove the ENU_mutation_classification/classifier directory (this will be replaced). Move all others archives into the ENU_mutation_classification directory and inflate them.
DOI: 10.5281/zenodo.3524200
title: Human sequence alignment data set used for analysis of SPDI algorithm and tools

description: Collection of alignment segments produced on October 30, 2019. The ADS currently consists of over 2,680,000 pairwise alignment segments generated from over 350,000 distinct input sequences. Old assembly to current Genome Reference Consortium (GRC) (Church et al., 2011) primary assemblies (e.g. GRCh36(hg18) or GRCh37(hg19) with GRCh38(hg38)) Patches, alternative loci, or pseudoautosomal regions (PAR) to GRC primary assembly RefSeq (O’Leary et al., 2016) and select GenBank (Benson et al., 2018) transcripts to selected RefSeq genomic regions, also known as RefSeqGene (NG), a member of the Locus Reference Genome (LRG) collaboration (Dalgleish et al., 2010). Current RefSeq transcripts (NM/NR/XM/XR) and RefSeq genomic regions (NG) to the latest Assembly Previous versions of NG and RefSeq transcripts (NM/NR) to GRC primary assembly
DOI: 10.5281/zenodo.3471643
title: Predicting Functional Effects of Synonymous Variants: A Systematic Review and Perspectives

description: This file contains the data we collected and analyzed in the paper https://www.frontiersin.org/articles/10.3389/fgene.2019.00914/abstract.
DOI: 10.5281/zenodo.3471642
title: Predicting Functional Effects of Synonymous Variants: A Systematic Review and Perspectives

description: This file contains the data we collected and analyzed in the paper https://www.frontiersin.org/articles/10.3389/fgene.2019.00914/abstract.
DOI: 10.7284/136778
title: TSG (Thermosalinograph) data collected during research cruise PE20-05 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.1421299
title: Simulated tumor and healthy sample

description: This dataset provides tumor and corresponding healthy sample from a simulation of somatic indels and SNVs using Venters genome. The reference genome (UCSC hg18) used for CRAM compression is delivered as well. Simulation was done as described here: https://doi.org/10.1101/741256.
DOI: 10.5281/zenodo.1421298
title: Simulated tumor and healthy sample

description: This dataset provides tumor and corresponding healthy sample from a simulation of somatic indels and SNVs using Venters genome. The reference genome (UCSC hg18) used for CRAM compression is delivered as well. Simulation was done as described here: https://doi.org/10.1101/741256.
DOI: 10.21227/y2jb-5989
title: Baseline 1

description: Baseline model with only filling gaps
DOI: 10.5066/p9hrhbxz
title: Data release for: Spatially explicit reconstruction of post-megafire forest recovery through landscape modeling

description: This data release provides inputs needed to run the LANDIS PRO forest landscape model and the LINKAGES 3.0 ecosystem process model for the area burned by the Black Dragon Fire in northeast China in 1987, and simulation results that underlie figures and analysis in the accompanying publication. The data release includes the fire perimeter of Great Dragon Fire; input data for LINKAGES including soils, landtype, and climate data; initial conditions of stands in the study area before the Great Dragon Fire; and maps of LANDIS PRO output for each model grid cell including total trees, total biomass (Mg/ha), and tree density (trees/ha) in two-year timesteps.
DOI: 10.6084/m9.figshare.13093088
title: USTRANSCOM 777-Flight Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Flight Tests
DOI: 10.6084/m9.figshare.13093100
title: USTRANSCOM 777-Terminal Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Terminal Tests
DOI: 10.6084/m9.figshare.13093076
title: USTRANSCOM 767-Hangar Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 767 Master Spreadsheet - Hangar Tests
DOI: 10.6084/m9.figshare.13093097
title: USTRANSCOM 777-Hangar Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Hangar Tests
DOI: 10.6084/m9.figshare.13093085
title: USTRANSCOM 767-Terminal Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 767 Master Spreadsheet - Terminal Tests
DOI: 10.6084/m9.figshare.13093055
title: USTRANSCOM 767-Flight Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 767 Master Spreadsheet - Flight Tests
DOI: 10.6084/m9.figshare.13093088.v1
title: USTRANSCOM 777-Flight Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Flight Tests
DOI: 10.6084/m9.figshare.13093097.v1
title: USTRANSCOM 777-Hangar Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Hangar Tests
DOI: 10.6084/m9.figshare.13093085.v1
title: USTRANSCOM 767-Terminal Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 767 Master Spreadsheet - Terminal Tests
DOI: 10.6084/m9.figshare.13093076.v1
title: USTRANSCOM 767-Hangar Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 767 Master Spreadsheet - Hangar Tests
DOI: 10.6084/m9.figshare.13093100.v1
title: USTRANSCOM 777-Terminal Master Spreadsheet

description: USTRANSCOM Aug 2020 - Commercial Aircraft Cabin Aerosol Dispersion Test - 777 Master Spreadsheet - Terminal Tests
DOI: 10.5281/zenodo.4081642
title: Neural Reverse Engineering of Stripped Binaries using Augmented Control Flow Graphs

description: This dataset and pre-trained models are released as a companion to our OOPSLA '20 publication: "Neural Reverse Engineering of Stripped Binaries using Augmented Control Flow Graphs": The dataset file (nero_dataset_binaries.tar.gz) is composed from packages of binary executables created by compiling several GNU source-code packages. We used these executables to evaluate our approach as implemented in our prototype "Nero" and compare it to other approaches. All executables contain debug information which serves as the ground truth for the procedure name predictions. The packages are split into three sets: training, validation and test. The executable file name structure is: "&lt;compiler&gt;-&lt;compiler version&gt;__O&lt;Optimization level(u for default)&gt;__&lt;Package name&gt;[-&lt;optional package version&gt;]__&lt;Executable name&gt;". For example "gcc-5__Ou__cssc__sccs". The pre-trained model file (nero_gnn_model.tar.gz) was created using the above dataset: The pre-trained model and training log. The prediction results log. For the code of the "Nero" prototype see our Github repo
DOI: 10.6084/m9.figshare.11914395
title: Data from: Thompson et al Who goes there? Social surveillance as a response to intergroup conflict in a primitive termite

description: Data supporting Thompson et al Biology Letters
DOI: 10.6084/m9.figshare.11914395.v1
title: Data from: Thompson et al Who goes there? Social surveillance as a response to intergroup conflict in a primitive termite

description: Data supporting Thompson et al Biology Letters