cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3607397_d7
title: Additional file 6: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S5. Counts after processing the raw read files with Additional file 17: Supplementary file 4 for PBS2. (XLSX 461 kb)
DOI: 10.6084/m9.figshare.c.3607445_d1
title: MOESM1 of Examination of patient flow in a rural health center in Malawi

description: Additional file 1. Time motion data.
DOI: 10.6084/m9.figshare.c.3607433_d3
title: Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: Pericarp and hull color of 157 ORSC accessions grouped by subpopulation (at Kâ  =â  6). Number of ORSC accessions with hull color and pericarp color phenotypes, grouped by subpopulation. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3607397_d8
title: Additional file 16: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Supplementary file 3. Perl script used for raw read procession and sgRNA read count. (PL 15 kb)
DOI: 10.15468/dl.6rb6gt
title: Occurrence Download

description: A dataset containing 48679 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieraaetus wahlbergi (Sundevall, 1850)"
 ]
}

 The dataset includes 48679 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032721-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607397_d15
title: Additional file 1: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S1. Detailed list and description of available parameters used in CLD. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3607466_d3
title: Additional file 6: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of variants confirmed to be real polymorphisms by genotyping. MAF = observed minor allele frequency; * H variants which MAF is close to that of rare variants and display the three genotypic classes in the genotyped animals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3607397_d16
title: Additional file 2: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S2. ENSEMBL ID to gene symbol mapping. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3607433_d13
title: Additional file 1: Table S1. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: Germplasm information. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3607466_d4
title: Additional file 4: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of variants displaying significant differences in pAAF between F2_F and F2_L. (XLSX 145 kb)
DOI: 10.6084/m9.figshare.c.3607397_d17
title: Additional file 17: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Supplementary file 4. Analysis scripts bundled as R markdown. (RMD 27 kb)
DOI: 10.6084/m9.figshare.c.3607466_d5
title: Additional file 7: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: Results on the genetic association of 36 polymorphisms with daily gain and retroperitoneal fat content in the 38 F2 pigs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3607466_d6
title: Additional file 1: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of successfully sequenced TASR and AR genes. Successfully sequenced genes include these genes fully or partially sequenced at a DP &gt; 1,000 considering all the libraries together. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3607466_d7
title: Additional file 2: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of variants identified in TASR and AR genes. This table contains all the variants, including the multi-allelic with more than one effect on protein sequence and these which alternative allele was fixed in all the animals. (XLSX 302 kb)
DOI: 10.6084/m9.figshare.c.3607466_d8
title: Additional file 8: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: Phenotype mean and standard deviation for F2_F and F2_L and the T-test p-value for both daily gain and retroperitoneal fat. (XLSX 16 kb)
DOI: 10.15468/dl.pjdvc6
title: Occurrence Download

description: A dataset containing 35740 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calypso bulbosa (L.) Oakes"
 ]
}

 The dataset includes 35740 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032722-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607541_d1
title: Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonferroni ≤ 5 %) resulting from GWAS using single SNP regression mixed linear model for milk production (MILK), fat production (FAT), fat deviation (FATD), protein production (PROT) and protein deviation (PROTD). (XLS 518 kb)
DOI: 10.6084/m9.figshare.c.3607538_d2
title: Additional file 2: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Differentially expressed mRNAs. (XLS 1631Â kb)
DOI: 10.6084/m9.figshare.c.3607541_d2
title: Additional file 8: Table S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonferroni ≤ 5 %) resulting from GWAS using single SNP regression mixed linear model for calving to first service interval (CTFS) and days open (DO). (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3607535_d3
title: Additional file 2: of A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata

description: Presents in detail all clusters found in the final graph by our algorithm. The clusters are ordered by their numbers in column A; the first cluster is a giant one (shown partially). The first line of each cluster is marked with fixed numbers in columns C–D; it contains the number of vertices (words) of that cluster in column E. Each of the subsequent lines corresponds to a word and contains the following data in columns A–J: the cluster number (A), the number of species in the cluster (B), the vertex degree (C), the vertex density, i.e., the number of graph parts this vertex is connected to (D), the species name (E), the sequence name (F), start position of the word in the sequence (G), the word length (H), DNA strand indicator (I), and the word itself (J). A part of the word shown in capital letters corresponds to the intersection of all words merged at this vertex (a group); lowercase letters correspond to the union of those words. If the word overlaps with regions of a gene and its coding sequence (CDS) according to the genome annotation available in GenBank, this word corresponds to a protein. In such cases, the gene data including the protein description is shown in columns K–O; and CDS data, in columns P–R. If only the first condition is satisfied, the word belongs to a gene untranslated region such as an intron; in this case, only the data on the gene are shown. If a word is a fragment of a known non-protein-coding RNA according to Rfam database, columns S–AB contain the RNA name and other data. The clusters that correspond to untranslated regions or unknown HCEs are highlighted in gold or blue, respectively, in column A. (XLSX 10204 kb)
DOI: 10.6084/m9.figshare.c.3607538_d3
title: Additional file 6: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Relationship between miRNAs and experiment validated genes. (XLS 1416Â kb)
DOI: 10.6084/m9.figshare.c.3607541_d3
title: Additional file 6: Table S7. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Common significant SNPs (genome-wise 1Â % FDR) identified among all production related traits (MILK, FAT, PROT, FATD, PROTD) using single SNP regression mixed linear model on imputed BovineHD (777Â k) genotypes in Holstein cattle. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3607538_d4
title: Additional file 7: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Relationship between miRNAs, experiment validated genes and lncRNAs. (XLS 6019Â kb)
DOI: 10.6084/m9.figshare.c.3607538_d5
title: Additional file 5: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Relationship between miRNAs and lncRNAs. (XLS 312Â kb)
DOI: 10.6084/m9.figshare.c.3607541_d4
title: Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS and DO) using single SNP regression mixed linear model on the imputed BovineHD (777Â k) genotypes in Holstein cattle. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3607538_d6
title: Additional file 1: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Differentially expressed miRNAs. (XLS 24Â kb)
DOI: 10.6084/m9.figshare.c.3607538_d7
title: Additional file 3: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Differentially expressed known lncRNAs. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3607598_d1
title: Additional file 2: Table S2. of Estimation of loss of genetic diversity in modern Japanese cultivars by comparison of diverse genetic resources in Asian pear (Pyrus spp.)

description: Description of the 19 simple sequence repeat (SSR) markers used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3607583_d2
title: Additional file 1: Table S1. of Patterns of rapid diversification in heteroploid Knautia sect. Trichera (Caprifoliaceae, Dipsacoideae), one of the most intricate taxa of the European flora

description: Voucher information and GenBank accession numbers. More information can be retrieved from http://www.uibk.ac.at/botany/balkbiodiv/?BALKBIODIV under “Sampling sites” (XLS 166 kb)
DOI: 10.6084/m9.figshare.c.3607574_d4
title: Additional file 4: of The global intellectual property ecosystem for insulin and its public health implications: an observational study

description: Spearman’s Rho coefficient. This file shows the data used to calculate the non-parametric Spearman’s rank correlation between the number of patent ‘threads” and the a) average number of persons with diabetes x 100 (2007–2010); b) the average GNI/capital (1995–2015). (XLSX 18.6 KB)
DOI: 10.6084/m9.figshare.c.3607607_d1
title: Additional file 1: Table S1. of Construction of possible integrated predictive index based on EGFR and ANXA3 polymorphisms for chemotherapy response in fluoropyrimidine-treated Japanese gastric cancer patients using a bioinformatic method

description: Selected genetic and clinical parameters of gastric cancer patients. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3607598_d3
title: Additional file 3: Table S3. of Estimation of loss of genetic diversity in modern Japanese cultivars by comparison of diverse genetic resources in Asian pear (Pyrus spp.)

description: Simple allele-sharing distances for the 207 accessions used in this study. (XLSX 259 kb)
DOI: 10.6084/m9.figshare.c.3607607_d3
title: Additional file 5: Table S3. of Construction of possible integrated predictive index based on EGFR and ANXA3 polymorphisms for chemotherapy response in fluoropyrimidine-treated Japanese gastric cancer patients using a bioinformatic method

description: Statistical information about the chemotherapeutic response of gastric cancer patients treated with fluoropyrimidine (pâ
DOI: 10.6084/m9.figshare.c.3607670_d1
title: Additional file 1: of The relationship between blood lead levels and occupational exposure in a pregnant population

description: Database: Blood lead levels in pregnant women from Durango, Mexico. (XLS 733 kb)
DOI: 10.6084/m9.figshare.c.3607685_d1
title: Additional file 1: of Small (autonomic) and large fiber neuropathy in Parkinson disease and parkinsonism

description: Detailed information about specific diagnosis, demographic characteristics, neurophysiologic studies, drugs in use and risk factors for peripheral neuropathy of PD and Parkinsonism groups. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3607682_d2
title: Additional file 2: of Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

description: The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used the 167 traits listed in the Vertebrate Trait Ontology column. A marker set containing the SNPs that was not included in any of the QTL sets and a set containing all markers was added to this genomic feature class, resulting in a total of 169 tested marker sets. The number of SNPs associated with each of the 169 QTL sets is shown in Additional file 2 (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3607694_d1
title: Additional file 1: of In vitro inhibitory activities of selected Australian medicinal plant extracts against protein glycation, angiotensin converting enzyme (ACE) and digestive enzymes linked to type II diabetes

description: Excel spreadsheet. Sheet 1. Sample codes. Sheet 2. IC50 calculations for anti-glycation, α-amylase, α-glucosidase and ACE inhibition. Sheet 3. Data for total phenolics, flavonoid content, FRAP and DPPH. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3607691_d2
title: MOESM2 of Phenotypic flexibility as a measure of health: the optimal nutritional stress response test

description: Supplementary material 2 (XLSX 48Â kb)
DOI: 10.5281/zenodo.14431096
title: ESG Value Asia
DOI: 10.5281/zenodo.14431097
title: ESG Value Asia
DOI: 10.6084/m9.figshare.c.3607721_d3
title: Additional file 3: Table S2. of Six1 homeoprotein drives myofiber type IIA specialization in soleus muscle

description: Affymetrix microarray analysis in SOL of cSix1 mice. (XLS 7368 kb)
DOI: 10.6084/m9.figshare.c.3607724_d2
title: Additional file 2: of miRNA profiling, detection of BRAF V600E mutation and RET-PTC1 translocation in patients from Novosibirsk oblast (Russia) with different types of thyroid tumors

description: Patients Characteristics. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3607724_d3
title: Additional file 3: of miRNA profiling, detection of BRAF V600E mutation and RET-PTC1 translocation in patients from Novosibirsk oblast (Russia) with different types of thyroid tumors

description: Average values of miRNA fold changes in different types of tumors from individual patients relative to the adjacent non-tumor tissue and the result of BRAF V600E testing. Yes – BRAF (V600E) or RET-PTC1 detected, no- BRAF (V600E) or RET-PTC1 not detected. Blank fields denote data missing for different reasons. PTC – papillary thyroid carcinoma, FVPTC – follicular variant of papillary thyroid carcinoma, FA – follicular adenoma, MTC – medullary thyroid carcinoma, FTC – follicular thyroid carcinoma. (XLS 98 kb)
DOI: 10.15468/dl.97hm5c
title: Occurrence Download

description: A dataset containing 13331 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epipogium aphyllum Sw."
 ]
}

 The dataset includes 13331 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032725-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607715_d20
title: MOESM9 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

description: Additional file 9: Tables S1, S2 and S3. S1: Microbial orders for the four main groups of BGPs, namely mesophile and thermophile BGPs, UASB reactors and sewage sludge BGPs. S2: Biological functions of the four main groups of BGPs, namely mesophile and thermophile BGPs, UASB reactors and sewage sludge BGPs. S3: Metaproteins of the four main groups of BGPs, namely mesophile and thermophile BGPs, UASB reactors and sewage sludge BGPs.
DOI: 10.6084/m9.figshare.c.3607802_d1
title: Additional file 3: of Comparison of pre-processing methods for multiplex bead-based immunoassays

description: Supplementary material. Datasets, which support the conclusions of this article. (ZIP 58Â kb)
DOI: 10.15468/dl.4htjqz
title: Occurrence Download

description: A dataset containing 99139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dactylorhiza viridis (L.) R.M.Bateman, Pridgeon & M.W.Chase"
 ]
}

 The dataset includes 99139 records from 818 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032724-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607847_d2
title: Additional file 3: Table S1. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

description: Accessions of panel A with STRUCTURE group membership and PCA results. (XLSX 97Â kb)
DOI: 10.6084/m9.figshare.c.3607847_d4
title: Additional file 7: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

description: Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ  Fig 5. (NEXML 400Â kb)
DOI: 10.6084/m9.figshare.c.3607847_d5
title: Additional file 4: Table S2. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

description: Accessions of Panel B with STRUCTURE group membership. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3607847_d6
title: Additional file 5: Table S3. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

description: SNPs in the 384 Illumina GoldenGate array (from Rice Diversity website http://ricediversity.org/ ). (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3607847_d7
title: Additional file 6: of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

description: Dendroscope nexml format file used to plot the Neighbour-Joining tree shown inÂ  Fig 4. (NEXML 453Â kb)
DOI: 10.6084/m9.figshare.c.3607928_d1
title: Additional file 1: of Changes in serum proteins after endotoxin administration in healthy and choline-treated calves

description: Clinical parameters (temperature, heart and respiratory rates, and total clinical score) in all groups. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.c.3607940_d1
title: Additional file 4: Table S3. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: Primers characteristics for genic-SSR of M. dubia. (CSV 1694 kb)
DOI: 10.6084/m9.figshare.c.3607940_d2
title: Additional file 5: Table S4. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: SNPs in unigenes of M. dubia. (XLSX 2653 kb)
DOI: 10.6084/m9.figshare.c.3607940_d7
title: Additional file 1: Table S1. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: KEEG Pathway list in transcriptome of M. dubia. (CSV 6 kb)
DOI: 10.6084/m9.figshare.c.3607979_d1
title: Additional file 4: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: DAVID-annotated enriched functional processes for the South African Lycaon individual. For each functional term, the total gene count, the associated genes, and the Benjamini-Hochberg false discovery rate value are given. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3607979_d2
title: Additional file 8: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Autosomal BUSCO orthologs identified in the Kenyan Lycaon pictus genome. Scaffolds are identified by GenBank accession. (XLSX 166Â kb)
DOI: 10.6084/m9.figshare.c.3607979_d3
title: Additional file 2: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Genic effects of SnpEff-annotated autosomal and X-chromosomal variants for the South African Lycaon individual. (HTML 1535Â kb)
DOI: 10.6084/m9.figshare.c.3607979_d4
title: Additional file 6: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Positive selection scan results on candidate Lycaon pelage genes. Genes were aligned to the reference CDS provided in the table. Gene coordinates are given with reference to the domestic dog genome [GenBank:CanFam3.1]. The total numbers of fixed and polymorphic synonymous and non-synonymous SNPs and the N/S ratios are provided. Also listed are non-SNP variants identified during the scan. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3608009_d5
title: Additional file 1: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: Identity of the differential expressed genes between egg-spot and anal fin tissue together with the expression values and dN/dS estimations. (XLSX 222 kb)
DOI: 10.6084/m9.figshare.c.3608009_d6
title: Additional file 4: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: qPCR results for P. pulpican. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3607979_d12
title: Additional file 7: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Autosomal BUSCO orthologs identified in the CanFam3.1 assembly. Scaffolds are identified by GenBank accession. (XLSX 182Â kb)
DOI: 10.6084/m9.figshare.c.3608018_d2
title: Additional file 2: of Use of the Theoretical Domains Framework to evaluate factors driving successful implementation of the Accelerated Chest pain Risk Evaluation (ACRE) project

description: Collated survey responses. (XLSX 22 kb)
DOI: 10.15468/dl.afc7na
title: Occurrence Download

description: A dataset containing 114845 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corallorhiza trifida Châtel."
 ]
}

 The dataset includes 114845 records from 514 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032723-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.