cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17179/excli2023-6242/supplementary_data
title: Antiviral activity of myricetin glycosylated compounds isolated from Marcetia taxifolia against Chikungunya virus

description: The chikungunya virus (CHIKV) has produced epidemic outbreaks of significant public health impact. The clinical symptoms of this disease are fever, polyarthralgia, and skin rash, generally self-limiting, although patients may develop a chronic disabling condition or suffer lethal complications. Unfortunately, there is no specific treatment or vaccine available. Thus, the search for effective therapies to control CHIKV infection is an urgent need. This study evaluated the antiviral activity of flavonoids isolated from Marcetia taxifolia by in vitro and in silico analysis. Cytotoxicity of compounds was determined by MTT assay and viral load was assessed in cell substrates supernatants by plaque-forming and RT-qPCR assays. Selected molecules were analyzed by molecular docking assays. Myricetin 3-rhamnoside (MR) and myricetin 3-(6-rhamnosylgalactoside) (MRG) were tested for antiviral assays and analyzed by the TCID50 method and RT-qPCR. MR exhibited dose-dependent antiviral activity, reducing viral titer at concentrations of 150-18.8 μg/mL by at least 1-log. Similarly, MRG showed a significant decrease in viral titer at concentrations of 37.5, 9.4, and 2.3 μg/mL. RT-qPCR analysis also displayed a substantial reduction of CHIKV RNA for both flavonoids. Furthermore, molecular docking of the selected flavonoids proposed the nsP3 macrodomain as a possible target of action. Our study reveals that MR and MRG could be considered promising anti-CHIKV therapeutic agents. Molecular modeling studies showed MR and MRG ligands with a high affinity for the N-terminal region of the nsP3 macrodomain, postulating them as a potential target of action for the CHIKV control.
description: EXCLI Journal; 22:Doc716; ISSN 1611-2156
DOI: 10.15468/f2smzq
title: 2021 Natural Resources Wales (NRW) Skomer zooplankton survey

description: Skomer Marine Conservation Zone (MCZ) is the only MCZ in Wales and sits within the Pembrokeshire Islands marine SAC (Special Area of Conservation). Natural Resoures Wales (NRW) has a duty to monitor these sites and plankton is not only a feature of the MCZ, but also a fundamental part in understanding the functioning of all the marine habitats that form features of the SAC. Skomer was a Marine Nature Reserve (wildlife and countryside act) but since 2009 is now a Marine Conservation Zone which was designated under the Marine & Coastal access act.
DOI: 10.5517/ccdc.csd.cc2fb8dg
title: CCDC 2244195: Experimental Crystal Structure Determination

description: Related Article: Pawel Löwe, Marius A. Wünsche, Felix R. S. Purtscher, Jakob Gamper, Thomas S. Hofer, Lukas F. B. Wilm, Maike B. Röthel, Fabian Dielmann|2023|Chemical Science|14|7928|doi:10.1039/D3SC02899B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fb8fh
title: CCDC 2244196: Experimental Crystal Structure Determination

description: Related Article: Pawel Löwe, Marius A. Wünsche, Felix R. S. Purtscher, Jakob Gamper, Thomas S. Hofer, Lukas F. B. Wilm, Maike B. Röthel, Fabian Dielmann|2023|Chemical Science|14|7928|doi:10.1039/D3SC02899B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fb8gj
title: CCDC 2244197: Experimental Crystal Structure Determination

description: Related Article: Pawel Löwe, Marius A. Wünsche, Felix R. S. Purtscher, Jakob Gamper, Thomas S. Hofer, Lukas F. B. Wilm, Maike B. Röthel, Fabian Dielmann|2023|Chemical Science|14|7928|doi:10.1039/D3SC02899B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fb8hk
title: CCDC 2244198: Experimental Crystal Structure Determination

description: Related Article: Pawel Löwe, Marius A. Wünsche, Felix R. S. Purtscher, Jakob Gamper, Thomas S. Hofer, Lukas F. B. Wilm, Maike B. Röthel, Fabian Dielmann|2023|Chemical Science|14|7928|doi:10.1039/D3SC02899B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fb8jl
title: CCDC 2244199: Experimental Crystal Structure Determination

description: Related Article: Pawel Löwe, Marius A. Wünsche, Felix R. S. Purtscher, Jakob Gamper, Thomas S. Hofer, Lukas F. B. Wilm, Maike B. Röthel, Fabian Dielmann|2023|Chemical Science|14|7928|doi:10.1039/D3SC02899B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8182102
title: Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging"

description: Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging". The docking.zip file contains ClusPro protein/protein docking results for all binding protein variants using either murine PD-1 structure (3bikB) or human PD-1 AF2 model as receptors. The pymol session contains data and scenes used to generate the Figures in the paper.
DOI: 10.5281/zenodo.8182101
title: Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging"

description: Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging". The docking.zip file contains ClusPro protein/protein docking results for all binding protein variants using either murine PD-1 structure (3bikB) or human PD-1 AF2 model as receptors. The pymol session contains data and scenes used to generate the Figures in the paper.
DOI: 10.5281/zenodo.8188236
title: Dataset for "Formation of a Scour Funnel Upstream of an Orifice Affected by a Bottom-mounted Cylinder"

description: The time-averaged velocity, TKE and bed topographies
DOI: 10.5281/zenodo.8188237
title: Formation of Scour Funnel Upstream Of an Orifice Affected by a Bottom-mounted Cylinder

description: The dataset is the results of measured velocity through an ADV(vectrino+ Nortek)
DOI: 10.5281/zenodo.8188262
title: Formation of a Scour Funnel Upstream of an Orifice Affected by a Bottom-mounted Cylinder

description: The time-averaged velocity, TKE and bed topographies
DOI: 10.5281/zenodo.8188938
title: Dataset for "Formation of a Scour Funnel Upstream of an Orifice Affected by a Bottom-mounted Cylinder"

description: The time-averaged velocity, TKE and bed topographies
DOI: 10.6084/m9.figshare.23545200
title: Supplementary Material for: Indications, Resource Allocation and Outcomes Associated with EXIT Procedures – A North American Fetal Therapy Network (NAFTNet) Survey

description: Introduction: Neonates with cardiorespiratory compromise at delivery are at substantial risk of hypoxic neurologic injury and death. Though mitigation strategies such as ex-utero intrapartum treatment (EXIT) exist, the competing interests of neonatal beneficence, maternal non-maleficence, and just distribution of resources require consideration. Due to the rarity of these entities, there are few systematic data to guide evidence-based standards. This multi-institutional, interdisciplinary approach aims to elucidate the current scope of diagnoses that might be considered for such treatments and examine if treatment allocation and/or outcomes could be improved. Methods: After IRB-approval, a survey investigating diagnoses appropriate for EXIT consultation and procedure, variables within each diagnosis, occurrence of maternal and neonatal adverse outcomes, and instances of suboptimal resource allocation in the last decade was sent to all NAFTNet center representatives. One response was recorded per center. Results: We received a 91% response rate and all but one center offer EXIT. Most centers (34/40, 85%) performed 1-5 EXIT consultations per year and 17/40 (42.5%) centers performed 1-5 EXIT procedures in the last 10 years. The diagnoses with the highest degree of agreement between centers surveyed to justify consultation for EXIT are head and neck mass (100%), congenital high airway obstruction (CHAOS) (90%), and craniofacial skeletal conditions (82.5%). Maternal adverse outcomes were noted in 7.5% of centers while neonatal adverse outcomes in 27.5%. A large percentage of centers report cases of suboptimal selection for risk mitigation procedures and several centers experienced adverse neonatal and maternal outcomes. Conclusion: This study captures the scope of EXIT indications and is the first to demonstrate the mismatch in resource allocation for this population. Further, it reports on attributable adverse outcomes. Given suboptimal allocation and adverse outcomes, further examination of indications, outcomes and resource use is justified to drive evidence-based protocols.
DOI: 10.6084/m9.figshare.23545200.v1
title: Supplementary Material for: Indications, Resource Allocation and Outcomes Associated with EXIT Procedures – A North American Fetal Therapy Network (NAFTNet) Survey

description: Introduction: Neonates with cardiorespiratory compromise at delivery are at substantial risk of hypoxic neurologic injury and death. Though mitigation strategies such as ex-utero intrapartum treatment (EXIT) exist, the competing interests of neonatal beneficence, maternal non-maleficence, and just distribution of resources require consideration. Due to the rarity of these entities, there are few systematic data to guide evidence-based standards. This multi-institutional, interdisciplinary approach aims to elucidate the current scope of diagnoses that might be considered for such treatments and examine if treatment allocation and/or outcomes could be improved. Methods: After IRB-approval, a survey investigating diagnoses appropriate for EXIT consultation and procedure, variables within each diagnosis, occurrence of maternal and neonatal adverse outcomes, and instances of suboptimal resource allocation in the last decade was sent to all NAFTNet center representatives. One response was recorded per center. Results: We received a 91% response rate and all but one center offer EXIT. Most centers (34/40, 85%) performed 1-5 EXIT consultations per year and 17/40 (42.5%) centers performed 1-5 EXIT procedures in the last 10 years. The diagnoses with the highest degree of agreement between centers surveyed to justify consultation for EXIT are head and neck mass (100%), congenital high airway obstruction (CHAOS) (90%), and craniofacial skeletal conditions (82.5%). Maternal adverse outcomes were noted in 7.5% of centers while neonatal adverse outcomes in 27.5%. A large percentage of centers report cases of suboptimal selection for risk mitigation procedures and several centers experienced adverse neonatal and maternal outcomes. Conclusion: This study captures the scope of EXIT indications and is the first to demonstrate the mismatch in resource allocation for this population. Further, it reports on attributable adverse outcomes. Given suboptimal allocation and adverse outcomes, further examination of indications, outcomes and resource use is justified to drive evidence-based protocols.
DOI: 10.5281/zenodo.8188950
title: [IO Islamic 2818] يوسف و زليخا Translation

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1356 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2818 here with notations and hyperlinks].</strong> 1356 A Pushtû translation of the same. This Pushtû translation of Jâmî’s Yûsuf and Zalîkhâ begins: عنايت ربّ په ماكَرَه – د امّيد غنچه مى واكَرَه Large extracts from this translation are given in Dorn, Chrestomathy of the Pushtû or Afghan language, ff. ١٧٤-٢٨٣, corresponding with fol. 11<sup>b</sup>, l. 4, to fol. 45, last line; fol. 46<sup>b</sup>, first line, to fol. 64<sup>b</sup>, l. 3; fol. 68<sup>b</sup>, l. 6, to fol. 70, l. 6; fol. 88, last line, to fol. 107<sup>b</sup>, l. 5; and fol. 157, l. 4, to fol. 159<sup>b</sup>, l. 3; comp. also the preface, ibidem, p. xi. No date. No. 2818, ff. 169, 2 coll., each ll. 10-13; Nasta’lîḳ; size, 8<sup>1/4</sup> in. by 5<sup>1/4</sup> in.
DOI: 10.5281/zenodo.8188949
title: [IO Islamic 2818] يوسف و زليخا Translation

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1356 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2818 here with notations and hyperlinks].</strong> 1356 A Pushtû translation of the same. This Pushtû translation of Jâmî’s Yûsuf and Zalîkhâ begins: عنايت ربّ په ماكَرَه – د امّيد غنچه مى واكَرَه Large extracts from this translation are given in Dorn, Chrestomathy of the Pushtû or Afghan language, ff. ١٧٤-٢٨٣, corresponding with fol. 11<sup>b</sup>, l. 4, to fol. 45, last line; fol. 46<sup>b</sup>, first line, to fol. 64<sup>b</sup>, l. 3; fol. 68<sup>b</sup>, l. 6, to fol. 70, l. 6; fol. 88, last line, to fol. 107<sup>b</sup>, l. 5; and fol. 157, l. 4, to fol. 159<sup>b</sup>, l. 3; comp. also the preface, ibidem, p. xi. No date. No. 2818, ff. 169, 2 coll., each ll. 10-13; Nasta’lîḳ; size, 8<sup>1/4</sup> in. by 5<sup>1/4</sup> in.
DOI: 10.21227/mrvj-ay91
title: Geographic coordinates of farms

description: Wireless underground sensor networks (WUSNs) promise to deliver substantial social and economic benefits across different verticals. However, many of the relevant application scenarios are located in remote areas with no supporting infrastructure available. To address this challenge, we conceptualize in this study the underground direct-to-satellite (U-DtS) connectivity approach, implying the reception of the signals sent by the underground massive machine-type communication (mMTC) sensors by the gateways operating on the low Earth orbit satellites. We start by discussing the two alternative architectures for enabling such networks and underline their features and limitations. Then, we employ simulations to model a smart-farming application scenario for studying the feasibility and performance of U-DtS mMTC based on LoRaWAN technology, with the focus on the effect of the parameters including the burial depths, soils characteristics, and communication settings. Our results reveal that the LoRa modulation fails to compete with the underground propagation losses and the high packets collision rate. However, the long range-frequency hopping spread spectrum (LR-FHSS) modulation is perspective for U-DtS networks and may enable connectivity for the subsurface nodes located at a depth of several dozens centimeters. Finally, we pinpoint the potential challenges and the research directions for future U-DtS studies.
DOI: 10.5281/zenodo.8188963
title: [IO Islamic 1234] Jâmî's Works

description: <strong>Jâmî's-Works.</strong> <strong>This manuscript is now IO Islamic 1358 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1234 here with notations and hyperlinks].</strong> 1358 Three prose-treatises by Jâmî. This copy contains: 1.On fol. 79<sup>b</sup>:لوامع مولوى جامى در شرح قصيدۀ خمريّۀ فارضيّه, the same commentary on Ibn al-Fâriḍ’s ‘wine- ḳaṣidah’ as in No. 16 of the preceding copy. 2.On fol. 122<sup>b</sup>: لوائح مولوى جامى, see No. 15 in the preceding copy. Beginning:لا احصى ثناء عليك الخ . 3.On fol. 141<sup>b</sup>: شرح رباعيّات مولوى جامى, see No. 12 in the preceding copy. Dated the 22nd of Jumâdâ-althânî, A.H. 1176 (A.D. 1763, Jan. 8). No. 1234, ff. 79-175, ll. 18; Naskhî; size, 8 in. by 4<sup>3/8</sup> in.
DOI: 10.5281/zenodo.8188962
title: [IO Islamic 1234] Jâmî's Works

description: <strong>Jâmî's-Works.</strong> <strong>This manuscript is now IO Islamic 1358 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1234 here with notations and hyperlinks].</strong> 1358 Three prose-treatises by Jâmî. This copy contains: 1.On fol. 79<sup>b</sup>:لوامع مولوى جامى در شرح قصيدۀ خمريّۀ فارضيّه, the same commentary on Ibn al-Fâriḍ’s ‘wine- ḳaṣidah’ as in No. 16 of the preceding copy. 2.On fol. 122<sup>b</sup>: لوائح مولوى جامى, see No. 15 in the preceding copy. Beginning:لا احصى ثناء عليك الخ . 3.On fol. 141<sup>b</sup>: شرح رباعيّات مولوى جامى, see No. 12 in the preceding copy. Dated the 22nd of Jumâdâ-althânî, A.H. 1176 (A.D. 1763, Jan. 8). No. 1234, ff. 79-175, ll. 18; Naskhî; size, 8 in. by 4<sup>3/8</sup> in.
DOI: 10.5281/zenodo.8188968
title: IO Islamic 2082] نفحات الأنس

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1359 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2082 here with notations and hyperlinks].</strong> 1359 Nafaḥât-aluns. Another very excellent and useful copy of Jâmî’s famous ‘biographies of Ṣûfis’ (see No. 8 in the collection of Jâmî’s prose works, No. 1357 above), with valuable marginal glosses and a complete index in alphabetical order, on ff. 443<sup>b</sup>-453<sup>a</sup>. This is not the oldest, but the <em>richest</em> copy in the India Office Collection, the number of biographies here amounting to 620. It is not dated, but on fol. 1<sup>a</sup> there are entries from A.H. 1162 (A.D. 1749), A.H. 1183 (A.D. 1769, 1770), and A.H. 1196 (A.D. 1782). Beginning as usual. No. 2082, ff. 453, ll. 15; splendid Nasta’lîḳ, small but very distinct; illuminated frontispiece; size, 8<sup>1/2</sup> in. by 5 in.
DOI: 10.5281/zenodo.8188967
title: IO Islamic 2082] نفحات الأنس

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1359 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2082 here with notations and hyperlinks].</strong> 1359 Nafaḥât-aluns. Another very excellent and useful copy of Jâmî’s famous ‘biographies of Ṣûfis’ (see No. 8 in the collection of Jâmî’s prose works, No. 1357 above), with valuable marginal glosses and a complete index in alphabetical order, on ff. 443<sup>b</sup>-453<sup>a</sup>. This is not the oldest, but the <em>richest</em> copy in the India Office Collection, the number of biographies here amounting to 620. It is not dated, but on fol. 1<sup>a</sup> there are entries from A.H. 1162 (A.D. 1749), A.H. 1183 (A.D. 1769, 1770), and A.H. 1196 (A.D. 1782). Beginning as usual. No. 2082, ff. 453, ll. 15; splendid Nasta’lîḳ, small but very distinct; illuminated frontispiece; size, 8<sup>1/2</sup> in. by 5 in.
DOI: 10.6084/m9.figshare.23790501
title: fig2.zip

description: date
DOI: 10.6084/m9.figshare.23790501.v1
title: fig2.zip

description: date
DOI: 10.5281/zenodo.8188979
title: [IO Islamic 3118] نفحات الأنس

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1360 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3118 here with notations and hyperlinks].</strong> 1360 The same. A third very full and complete copy, containing, like the one in No. 1357 above, 612 biographies (578 men and 34 women), with copious marginal glosses and additions. There is inserted between the fly-leaves a double index, the first following the order of the biographies in the text, the second arranged alphabetically like that in the preceding copy. No date. No. 3118, ff. 419, ll. 15; clear and distinct Nasta’lîḳ; worm-eaten throughout; size, 10<sup>5/8</sup> in. by 5<sup>3/4</sup> in.
DOI: 10.5281/zenodo.8188978
title: [IO Islamic 3118] نفحات الأنس

description: <strong>Jâmî's-Mathnawîs.</strong> <strong>This manuscript is now IO Islamic 1360 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3118 here with notations and hyperlinks].</strong> 1360 The same. A third very full and complete copy, containing, like the one in No. 1357 above, 612 biographies (578 men and 34 women), with copious marginal glosses and additions. There is inserted between the fly-leaves a double index, the first following the order of the biographies in the text, the second arranged alphabetically like that in the preceding copy. No date. No. 3118, ff. 419, ll. 15; clear and distinct Nasta’lîḳ; worm-eaten throughout; size, 10<sup>5/8</sup> in. by 5<sup>3/4</sup> in.
DOI: 10.5281/zenodo.8188966
title: WikiMed-DE

description: WikiMed-DE is a silver-standard, automatically annotated biomedical entity linking dataset for the German language. WikiMed-DE encompasses a substantial collection of 53,981 articles from the German Wikipedia annotated with 1,951,081 mentions corresponding to 317,010 unique mention URLs. The hyperlinks of Wikipedia articles are used to connect concept mentions to Wikidata and transitively to three biomedical concept IDs: the Concept Unique Identifier from the Unified Medical Language System, the MeSH ID from Medical Subject Headings hierarchy, and the DOID from the Disease Ontology. A curated subset, WikiMed-DE-BEL, is released as a ready-to-use benchmark for biomedical entity linking in German. It features the same number of articles as WikiMed-DE, but only the highest-quality information is retained: 413,913 mentions corresponding to 35,012 unique concepts.