cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19097447.v1
title: pan-Zea_genome supporting data

description: <br>The compressed file include three type of data:<br>1. the pan-Zea genome sequences, gene annotations, and gene PAV matrix2. the maize structural variation map in vcf format3. the GWAS summary data for multi-omics traits<br>with directory structure of :<br>pan-Zea_genome_joined_v1.0├── pan-Zea_gene_PAV_matrix.tsv.gz├── pan-Zea_genome_joined.fasta.gz└── pan-Zea_genome_joined.gff3.gzpan-Zea_SV_v1.0├── AMP_SV.vcf.gz└── AMP_SV.vcf.gz.md5pan-Zea_GWAS_Summary_v1.0├── md5.txt├── PANZ_GWAS_Merged_QTLs.tsv.gz└── PANZ_GWAS_Summary_in_QTL.tsv.gz<br>
DOI: 10.3535/3rt-67j-gbc
title: Cingulochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/49z-re2-tc6
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14330156.v1
title: Epifluorescence Imaging with SST-GiDREADD

description: Epifluorescent imaging of GCaMP6-s in mouse pups aged P8-P14, before and after clozapine to suppress SST cells through a GiDREADD. <br>Control animals were injected with GCaMP6-s but not expressing the GiDREADD construct. <br>varNames = {'file','startFrame', 'endFrame', 'meanAmplitude','Distance','Total area activated (square mm)', 'Average size of event (square mm)','Largest area in an event (square mm)','Speed', 'Deviation','Duration (seconds)','Xdist','Ydist','Unique Px Activated', 'Start v1', 'End v1', 'in v1', 'NaN', 'Mean as % FoV', 'Max as % FoV'};<br>
DOI: 10.3535/mhw-x4k-dyk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r6d-1m6-az6
title: †Cliftonia Foerste, 1909

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19586230.v1
title: Oxygen requirement and associated risk factors in post-COVID-19 patients admitted to a tertiary care center: a cross-sectional study

description: This is an SPSS data with all the variables analyzed in the study. Instead, data related to additional variables are also there.
DOI: 10.6084/m9.figshare.24018594.v1
title: Coefficients for KYNEBBRR model

description: The tables attached contain coefficients A', B', C', D' for polynomial approximations of polarization degree versus energy computed for X-ray single-temperature blackbody radiation passing through a passive constant-density slab. The models were originally computed with TITAN (Dumont et al., 2003) and STOKES (Goosmann and Gaskell, 2007) codes. The details of the modelling with full description of these tables are given in the doctoral thesis Podgorný (2023) and in less detail in Ratheesh et al. (2023). The method and origins date back to Taverna et al. (2021). Once computed in high energy resolution in the limit of high ionization, the polarization degree versus energy was smoothed at 1-9 keV range and at 9-20 keV range, using y = A'x^3 + B'x^2 + C'x + D'.Usage:First unzip the main file. Then each table in the main directory contains in the 1st column a value of cosine of the emission angle measured from the disc normal. In the 2nd to 5th column values of the coefficients A', B', C', D' obtained by the Python numpy.polyfit routine in the 1-9 keV range. The same for 9-20 keV range is in the 6th to 9th columns. Each table is called "n18", according to the n<sub>H</sub> = 10<sup>18</sup> cm<sup>-3</sup> density used and then with "xiBB", suggesting the blackbody normalization of the illumination in photoionization equlibrium. Then the number after "T" in the name of each file sets the single-temperature value of the blackbody in keV, i.e. 0.50 keV, 0.80 keV, 1.15 keV, or 1.40 keV. Last number in the file name after "tau" is the total Thomson optical depth, given by the slab height in STOKES, i.e. 0.2, 0.4, 0.67, 1, 1.3, 1.5, 2, 3, 5, 7, or 10 values. As such, the tables are ready to use inside the KYNEBBRR routine, which integrates them accross the accretion disc, taking into account all relativistic effects. This routine is part of the KY codes (Dovčiak et al. 2004, 2011, Taverna et al. 2020, Mikušincová et al. 2023), which are suitable for fitting with XSPEC (Arnaud, 1996).
DOI: 10.6084/m9.figshare.5258077.v1
title: Thesis: Multiscale simulation of slip flow and adsorption in carbon nanopores (supplementary materials)

description: Supplementary materials for Thesis: Multiscale simulation of slip flow and adsorption in carbon nanopores.
DOI: 10.3535/fbn-zny-wjp
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pgf-xlm-z1z
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27119046.v1
title: Data for analysis, 2000-2020, semi-annual.xlsx

description: This data has been provided with respect to an article titled " <b>SUSTAINABILITY OF DEVELOPMENTAL POLICIES: EMPIRICAL EVIDENCE FROM DEVELOPING AND LOWER-MIDDLE INCOME COUNTRIES".</b>
DOI: 10.17632/bwh2nt6g4k
title: Gliding videos of the orchid mantis

description: Video S1: Gliding performance of a 6th instar orchid mantis nymph dropped from ten meters above the ground. Video S2: Gliding performance of a 6th instar orchid mantis nymph, which was initiated with a startled jump. Note the mid-air turn during gliding. Video S3: An orchid mantis nymph glided to the black background in an indoor glide arena. Video S4: Vertical descent of an anesthetized orchid mantis nymph.
DOI: 10.3535/jkg-k06-1kz
title: Pharmacosiderite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rbh-wjy-zg4
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26946478.v1
title: Parameters-desicion variables.xlsx

description: <b> Agri-food supply chain viability dataset</b>
DOI: 10.6084/m9.figshare.3515429.v1
title: Appendix C. Median predicted sizes and stochastic growth rates of Sierra Nevada bighorn sheep populations over 5 and 10 years given correlated vital rates, demographic stochasticity, and inital sizes and stage distributions from 2007 field surveys.

description: Median predicted sizes and stochastic growth rates of Sierra Nevada bighorn sheep populations over 5 and 10 years given correlated vital rates, demographic stochasticity, and inital sizes and stage distributions from 2007 field surveys.
DOI: 10.17632/8p5vggxwjp
title: Data_Burke_et_al._2024_Rhesus_Macaques

description: Juvenile Friendship_rhesus macaques
DOI: 10.3535/4sc-jes-zfc
title: †Orthidae Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t5m-rdc-kms
title: Chromite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14573190.v1
title: BIBSAM Compact 2019-2020 Impact Study.pdf

description: This study explores the early impact of the open access Springer Compact articles published in 2019 and 2020 under the Read and Publish agreement between Springer Nature and the BIBSAM consortium. The corresponding authors of the articles are affiliated with one of participating member institutions of the agreement. Using a variety of indicators, the study sheds new light on the scope and nature of the wider and diverse impact of this large-scale publication set. The overall spirit of the study is explorative in nature, and thus, does not draw on traditional metrics, such as citations, for the purpose of formal impact assessment. The main part of the study, Part I, looks at the Publishing element with a view to capture the rich nature of impact, ranging from societal impact to geographic reach and international collaboration. The analysis is on early-stage impact as evidenced in the first few years of publication. Where possible, the data points have been visualized, often in experimental ways. Part II of the study provides qualitative data from a SpringerLink user survey to provide insights into user satisfaction of SpringerLink content that is part of the Reading element of the agreement. Please also note that the data and resulting analysis comes with given limitations as outlined on page 8. The work seeks to stimulate discussion and welcomes input and suggestions for further study.
DOI: 10.6084/m9.figshare.19844755.v1
title: Dataset and analyses of global reptile bioregions

description: Dataset and scripts used to run the analyses of global reptile bioregions and the comparison among regionalisations of different vertebrate grooups. <br> The dataset contains the following files: <br> - "Reptile distribution & phylogeny.Rdata": Rdata file containing four objects. 1) "comm": matrix of reptile species presence in 200 x 200 km cells across the globe; 2) "coo": coordinate of centroids of the 200 x 200 km cells; 3) "tree": phylogeny for the 9016 reptile species included in this study; 4) "coastline": global coastline used to refine the output of analyses of raster data. Species ranges were retreived from an updated version (1.5) of the "Global Assessment of Reptile Distributions" [Roll, U. et al. The global distribution of tetrapods reveals a need for targeted reptile conservation. Nat. Ecol. Evol. 1, 1677–1682 (2017)]. Phylogenetic data were retrieved from an inference-based phylogenetic tree [Tonini, J. F. R., Beard, K. H., Ferreira, R. B., Jetz, W. & Pyron, R. A. Fully-sampled phylogenies of squamates reveal evolutionary patterns in threat status. Biol. Conserv. 204, 23–31 (2016)]. <br> - "Defining global reptile bioregions.R": script used to define global reptile bioregions. It includes a modified version of the "phylo.beta.pair()" function (R package "betapart"), that avoids the need of huge amount of RAM and allows a more efficient calculation of philogenetic beta diversity by identifying duplicate communities and running calculations in parallel. To run, this script needs "Reptile distribution & phylogeny.Rdata". <br> - "Bioregions.zip": Bioregions of the different vertebrate groups compared in the current work (reptile, amphibians, birds, mammals) in shapefile format. For each group, we provide two shapefiles, showing realms and regions. <br> - "Random regions example.R": Script of example to test the significance of V-measure values through null-models. The example is performed on shallow regions, but the same script can be applied to any regionalisation. To run, this script needs "Bioregions.zip" to be extracted in the working directory.
DOI: 10.6084/m9.figshare.25206392.v1
title: Spectral filtering matrix of spatial-varying non-isotropic Gaussian-based convolution (VGC) filter.

description: Spectral filtering matrix of spatial-varying non-isotropic Gaussian-based convolution (VGC) filter.
DOI: 10.6084/m9.figshare.26391163.v2
title: Plant<b> </b>acquisitive strategies confer multidimensional stability of semiarid grasslands

description: Here, we provide two sets of independent data to support our study titled “Plant Acquisitive Strategies Confer Multidimensional Stability of Semiarid Grasslands”. For further details, please contact Pu Yan (pyan40@gatech.edu).
DOI: 10.3535/cqn-rql-jy8
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ptt-4ml-fna
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14511987.v1
title: Betway_PlantTraits_2018.xlsx

description: Functional trait data was collected on 15 species at three sites spanning a latitudinal gradient (Utqiagvik, Atqasuk, and Toolik Lake) in northern Alaska. Data was collected on 10 representative individuals for each species at each region.
DOI: 10.6084/m9.figshare.899765.v1
title: Reasons for film MPAA ratings of PG or higher, 1991-2013

description: This file contains a list of all MPAA rated films (PG or higher) and the reasons for those ratings from 1991 through 2013. This file does not include G rated films. There are 7 columns: Film: the film name Year: the year the film was released MPAA_Rating: the rating the MPAA assigned the film Violence: True or False, indicating that violence was stated as a reason for the rating Sex: True or False, indicating that sex was stated as a reason for the rating Drugs: True or False, indicating that drugs were stated as a reason for the rating Language: True or False, indicating that strong language was stated as a reason for the rating This data was processed from the raw MPAA rating data available via IMDB: www.imdb.com/interfaces
DOI: 10.17632/b54yx74r5f
title: BEHAVIORAL DATA

description: BEHAVIORAL DATA
DOI: 10.3535/72j-5b1-mpk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jg9-6et-z2j
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12250106.v2
title: Figure 5 - Biofilm-detached cells Viability (CFU and Cytometry).xlsx

description: RAW Data from the paper "<b>Cell death and biomass reduction in biofilms of multidrug resistant extended spectrum β-lactamase-producing uropathogenic <i>Escherichia coli</i> isolates by 1,8-cineole</b>" from Plos One.
DOI: 10.6084/m9.figshare.7440299.v1
title: High-throughput sequencing raw data for 2 samples( porcine epithelial cell line,IPEC-J2)

description: High-throughput sequencing raw data for 2 samples,IPEC_A2_A_are the samples from control group;and IPEC_B2_B_ are the samples from treatment group
DOI: 10.3535/88m-tbq-gg9
title: Halite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pcd-x4d-mfy
title: Microbrachius kedoae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gl8-rbj-wqz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kg6-bec-pwj
title: Proustite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.18128948.v1
title: Cirrhinus cirrhosus from Halda river, Bangladesh PANNZER2 annotation files in Excel (xlsx) format

description: Cirrhinus cirrhosus (Mrigal) from Halda river, Bangladesh PANNZER2 annotation files in Excel (xlsx) format
DOI: 10.3535/ykl-kn4-409
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d9s-nrv-qwn
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hfr-3er-t0b
title: Microbrachius kedoae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qhp-386-4xh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12746384.v1
title: Biogenic volatile organic compound fluxes from the forest floor, canopy, and whole ecosystem in a mixed deciduous forest in Indiana, USA

description: Biogenic volatile organic compound fluxes from the whole ecosystem, plant canopy (_c) and forest floor (_g) estimated using a hybrid Lagrangian/Eulerian canopy model in a deciduous forest in Indiana, USA. Flux units are in nmol m<sup>-2</sup> s<sup>-1</sup>. Time is the fraction of day of May, 2015.
DOI: 10.6084/m9.figshare.17125646.v2
title: Exhuming and preserving epizonal orogenic Au-Sb deposits in rapidly uplifting orogenic settings

description: Epizonal orogenic Au-Sb deposits are generally Phanerozoic in age, possibly as a consequence of erosion that can entirely remove older mineral deposits in rapidly uplifting orogenic setting. Quantifying post-mineralization thermotectonic processes is essential for documenting the exhumation and preservation of epizonal deposits, which in turn is critical for constraining regional deformation. This study focuses on the giant Zaozigou deposit, and documents cooling rates using amphibole and biotite Ar-Ar, zircon U-Th/He, and apatite fission-track dating. Six cooling phases are identified, including Early to Middle Triassic very rapid cooling, Late Triassic rapid cooling, Early Jurassic slow cooling, Middle to Late Jurassic rapid cooling, Cretaceous to Oligocene slow cooling, and Miocene to present rapid cooling. Initial cooling corresponds to thermal exchange between magmatic rocks and wall rocks. Phases two through five are related to a sequence of post-mineralization compressional, strike-slip, compressional, and extensional events, pointing to multi-phase tectonic evolution of the Qinling Orogen since the Late Triassic. Late exhumation is probably related to lateral growth of the Tibetan Plateau and/or to rapid erosion induced by intensification of the Asian monsoon. In total, ~ 6.3 km of rock was removed post-mineralization. We conclude that Cretaceous to Oligocene extension retarded the continuous erosion and thus played an important role in the preservation of Zaozigou. Combined with known orogenic processes, our results demonstrate that a long-lived extension is a favorable tectonic environment for the preservation of epizonal orogenic Au-Sb deposits in rapidly uplifting orogenic setting.
DOI: 10.6084/m9.figshare.19808443.v1
title: Antenatal care

description: The dataset is on the antenatal care of mothers
DOI: 10.17632/6v3t3bzt8n
title: Temperature Responses in House Sparrow

description: Endocrine and metabolic markers of response to temperature and daytime in free-ranging Australian House Sparrows.
DOI: 10.3535/7mm-yp7-exq
title: Ancyrochitina paulaspina

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13194710.v1
title: Coprates Chasma Dune Shapefiles

description: ArcGIS shapefiles of select dunes in Coprates Chasma, Mars.
DOI: 10.6084/m9.figshare.19665993.v2
title: ancillary data.xlsx

description: ancillary data (e.g. OTU abundance tables with taxonomy) and sample table with the correspond codes used for the sequence libraries and paper
DOI: 10.3535/b4j-dy4-t5m
title: Cryolite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t9n-az7-evs
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4559374.v1
title: Injury Prevalence and Safety Habits of Boda Bodas in Moshi Tanzania: A Mixed Methods Study

description: Background: Road traffic crashes are a major cause of global morbidity and mortality disproportionately affecting low- and middle-income countries (LMIC). Motorcycle taxi, or boda boda drivers are particularly vulnerable because they are exposed to traffic risks with limited safety equipment. This study aims to characterize injury prevalence and safety habits among boda boda drivers, as well as ways to improve road traffic safety in a LMIC. Methods: A prospective mixed methods interview and safety assessment was administered to 300 boda boda drivers between 24 March and 3 April 2014 in urban Moshi, Tanzania. Participants were chosen randomly from 25 of 58 registered boda boda stands and 2 of 31 unregistered stands. The survey was administered using a computerized and internet based survey tool and tablet computers. Data were analyzed using R, and a thematic analysis was performed and agreed upon by three investigators (MP, TN, CAS). A network analysis was performed to evaluate the association between boda boda characteristics and injury risk. Results: In total, 300 drivers participated of which 148 (49.3%) experienced a lifetime crash, and 114 (77.0%) sustained at least one injury. Only 27 of those injured (23.4%) were hospitalized. 220 participants (73.3%) reported consistent helmet usage despite the fact that 285 participants (95.0%) agree that helmet usage reduces injury severity. Of the 280 helmets observed, 231 (82.5%) were either damaged or fit improperly. A thematic analysis of boda boda drivers’ suggestions to increase road safety identified four intervention areas: 1) roadway infrastructure and traffic regulation, 2) road user attitudes and safe driving behaviors, 3) education and training, and 4) law enforcement.<br>Conclusion: Our study demonstrates a high prevalence of road traffic crashes and injuries amongst boda boda drivers. The study identifies four intervention areas that can be leveraged to increase overall road traffic safety. Unfortunately, while boda boda drivers are aware of ways to improve safety, adherence to safety habits remains low. Successful multi-sectoral interventions are needed to improve road safety for boda boda drivers in Tanzania.
DOI: 10.17632/64tgk3x979
title: Innovative Method of Biomass Combustion in the Binary Fluidised Bed

description: Raw FTIR spectra of biomass decomposition gaseous products under various conditions.
DOI: 10.3535/4c5-xp8-56j
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5r2-dha-xn0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7415822.v1
title: Microbial binning using VAMB of human gut microbiome Integrated Gene Catalogue - Bin statistics

description: Statistics of metagenomics bins from the Human gut microbiome, Integrated Gene Catalogue. Consists of 9.8 million genes and 1270 samples. Bins are created using Variational Autoencoders for Metagenomics Binning (VAMB), a method that used deep learning to improve binning of microbial genomes from metagenomics datasets.
DOI: 10.6084/m9.figshare.7899788.v1
title: Highly birefringent do-octagonal photonic crystal fibers with ultra flattened zero dispersion for supercontinuum generation

description: Abstract Photonic crystal fiber (PCF) structures with do-octagonal geometry have been studied. These do-octagonal PCF structure have smaller circular holes arranged in rhombic fashion at its centre. Moreover, these small holes are doped with materials like butanol, ethanol, methanol and propanol. Do-octagonal PCF structures doped with methanol and air filled structure report very high birefringence. Ultra flattened zero dispersion has been achieved by all the simulated structures. Besides, low confinement loss and large nonlinearity have also been reported. Numerical simulation for supercontinuum generation has been performed. Supercontinuum spectra obtained for peak power 1 kW, 2 kW, 5 kW and 10 kW are 650 nm, 950 nm, 1450 nm and 2050 nm respectively.
DOI: 10.17632/4ghzsy8m35
title: Hsa-miR-1587 binding proteins: Human proteome microarray dataset

description: Table 1. The scanning data of proteome microarray after incubation with miR-1587 G-quadruplex. The miR-1587 was labelled with FAM and then dissolved in 30 mM Tris-HCl / 150 mM KCl to form G-quadruplex, followed by incubation with the microarray. The microarray was then scanned at 488 nm using a GenePix 4200A microarray scanner (Axon Instruments, Molecular Devices, CA, USA) to visualize. GenePix Pro-6.0 software (Axon Instruments, Molecular Devices, CA, USA) was used for data reading. Table 2. The scanning data of proteome microarray after incubation with free form miR-1587. The miR-1587 was labelled with FAM and then dissolved in 30 mM Tris-HCl and had a free form in solution. After incubation with the free form miR-1587, the microarray was scanned at 488 nm using a GenePix 4200A microarray scanner (Axon Instruments, Molecular Devices, CA, USA) to visualize. GenePix Pro-6.0 software (Axon Instruments, Molecular Devices, CA, USA) was used for data reading.
DOI: 10.3535/lsf-445-8rw
title: Microbrachius kedoae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.