cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.35kg335
title: Data from: Large-scale network integration in the human brain tracks temporal fluctuations in memory encoding performance

description: Although activation/deactivation of specific brain regions have been shown
 to be predictive of successful memory encoding, the relationship between
 time-varying large-scale brain networks and fluctuations of memory
 encoding performance remains unclear. Here we investigated time-varying
 functional connectivity patterns across the human brain in periods of
 30-40 s, which have recently been implicated in various cognitive
 functions. During functional magnetic resonance imaging, participants
 performed a memory encoding task, and their performance was assessed with
 a subsequent surprise memory test. A graph analysis of functional
 connectivity patterns revealed that increased integration of the
 subcortical, default-mode, salience, and visual subnetworks with other
 subnetworks is a hallmark of successful memory encoding. Moreover,
 multivariate analysis using the graph metrics of integration reliably
 classified the brain network states into the period of high (vs. low) memo
 ry encoding performance. Our findings suggest that a diverse set of brain
 systems dynamically interact to support successful memory encoding.
description: MRI dataset -
 READMEMRI dataset for
 Large-scale network integration in the human brain tracks temporal
 fluctuations in memory encoding performanceMRI dataset - Subject
 01sub-01.tar.gzMRI dataset - Subject 02sub-02.tar.gzMRI dataset - Subject 03sub-03.tar.gzMRI dataset - Subject 04sub-04.tar.gzMRI dataset - Subject 05sub-05.tar.gzMRI dataset - Subject 06sub-06.tar.gzMRI dataset - Subject 07sub-07.tar.gzMRI dataset - Subject 08sub-08.tar.gzMRI dataset - Subject 09sub-09.tar.gzMRI dataset - Subject 10sub-10.tar.gzMRI dataset - Subject 11sub-11.tar.gzMRI dataset - Subject 12sub-12.tar.gzMRI dataset - Subject 13sub-13.tar.gzMRI dataset - Subject 14sub-14.tar.gzMRI dataset - Subject 15sub-15.tar.gzMRI dataset - Subject 16sub-16.tar.gzMRI dataset - Subject 17sub-17.tar.gzMRI dataset - Subject 18sub-18.tar.gzMRI dataset - Subject 19sub-19.tar.gzMRI dataset - Subject 20sub-20.tar.gzMRI dataset - Subject 21sub-21.tar.gzMRI dataset - Subject 22sub-22.tar.gzMRI dataset - Subject 23sub-23.tar.gzMRI dataset - Subject 24sub-24.tar.gzMRI dataset - Subject 25sub-25.tar.gz
DOI: 10.5061/dryad.73s46
title: Data from: A method for detecting recent changes in contemporary effective population size from linkage disequilibrium at linked and unlinked loci

description: Estimation of contemporary effective population size (Ne) from linkage
 disequilibrium (LD) between unlinked pairs of genetic markers has become
 an important tool in the field of population and conservation genetics. If
 data pertaining to physical linkage or genomic position are available for
 genetic markers, estimates of recombination rate between loci can be
 combined with LD data to estimate contemporary Ne at various times in the
 past. We extend the well-known, LD-based method of estimating contemporary
 Ne to include linkage information and show via simulation that even
 relatively small, recent changes in Ne can be detected reliably with a
 modest number of SNP loci. We explore several issues important to
 interpretation of the results and quantify the bias in estimates of
 contemporary Ne associated with the assumption that all loci in a large
 SNP dataset are unlinked. The approach is applied to an empirical dataset
 of SNP genotypes from a population of a marine fish where a recent,
 temporary decline in Ne is known to have occurred.
description: Raw Data
 FilesGenepop files for
 simulated and empirical datasetsraw_data.tar.gz
DOI: 10.5061/dryad.j6823nt
title: Data from: Does population structure predict the rate of speciation? A comparative test across Australia's most diverse vertebrate radiation

description: Population divergence is the first step in allopatric speciation, as has
 long been recognized in both theoretical models of speciation and
 empirical explorations of natural systems. All else being equal, lineages
 with substantial population differentiation should form new species more
 quickly than lineages that maintain range-wide genetic cohesion through
 high levels of gene flow. However, there have been few direct tests of the
 extent to which population differentiation predicts speciation rates as
 measured on phylogenetic trees. Here, we explicitly test the links between
 organismal traits, population-level processes, and phylogenetic speciation
 rates across a diverse clade of Australian lizards that shows remarkable
 variation in speciation rate. Using genome-wide ddRAD data from 892
 individuals, we generated a comparative dataset on isolation-by-distance
 and population differentiation across 104 putative species-level lineages
 (OTUs). We find that species show substantial variation in the extent of
 population differentiation, and this variation is predicted by organismal
 traits that are thought to be proxies for dispersal and deme size.
 However, variation in population structure does not predict variation in
 speciation rate. Our results suggest that population differentiation is
 not the rate-limiting step in species formation and that other ecological
 and historical factors are primary determinants of speciation rates at
 macroevolutionary scales.
description: BEAST XML file used to
 infer phylogenybeast_ucln_31July17.xmlTable S1Details on the individuals for which we generated ddRAD data, including their museum voucher id, latitude, longitude, nominal species, and raw number of sequencing pairs generated.S1_individuals_v3.csvPhylogeny of revised taxonomyotu.trePhylogeny of existing taxonomyspecies.trePseudo-reference genomes for revised speciesassemblies.zip
DOI: 10.15468/dl.jtnm6j
title: Occurrence Download

description: A dataset containing 284128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "CoordinateUncertaintyInMeters 0.0-350.0",
 "Geometry POLYGON((-0.14651 42.02361,5.13442 42.02361,5.13442 45.25074,-0.14651 45.25074,-0.14651 42.02361))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Botaurus stellaris, Oenanthe hispanica, Sylvia conspicillata, Calandrella brachydactyla, Lanius meridionalis, Melanocorypha calandra, Galerida theklae, Lanius excubitor, Ixobrychus minutus, Milvus milvus, Acrocephalus melanopogon, Lanius senator, Numenius arquata, Emberiza hortulana, Acrocephalus arundinaceus, Chroicocephalus genei, Crex crex, Glareola pratincola, Charadrius alexandrinus, Falco naumanni, Emberiza schoeniclus, Ardea purpurea, Lagopus muta, Gelochelidon nilotica, Saxicola rubetra, Porphyrio porphyrio, Sternula albifrons, Perdix perdix, Dendrocopos leucotos, Thalasseus sandvicensis, Tichodroma muraria, Montifringilla nivalis, Actitis hypoleucos, Cecropis daurica, Elanus caeruleus, Emberiza schoeniclus x rustica, Gallinago gallinago, Plegadis falcinellus, Aquila chrysaetos, Locustella luscinioides, Monticola solitarius, Sylvia undata, Tetrax tetrax, Ardeola ralloides, Circus pygargus, Hieraaetus pennatus, Nycticorax nycticorax, Tringa totanus, Vanellus vanellus, Anthus pratensis, Porzana porzana, Anthus campestris, Casmerodius albus, Pyrrhocorax pyrrhocorax, Aegolius funereus, Gyps fulvus, Monticola saxatilis, Panurus biarmicus, Turdus torquatus, Circus aeruginosus, Coracias garrulus, Circus cyaneus, Clamator glandarius, Sterna hirundo)"
 ]
}

 The dataset includes 284128 records from 320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000326-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e227650
title: NU DATA RESCUE - CMS - Innovation Center Model Summary Information

description: The Innovation Center Model Summary Information dataset contains various
 data points related to CMS Innovation Center models, demonstrations, 
programs, and initiatives. This can includes name, start and end date, 
statutory or regulatory authority, keywords, stage of implementation, 
participants, beneficiaries and physicians impacted, and categories 
related to health care quality, cost, payment, and delivery. <br><br>
DOI: 10.3886/e227650v3
title: NU DATA RESCUE - CMS - Innovation Center Model Summary Information

description: The Innovation Center Model Summary Information dataset contains various
 data points related to CMS Innovation Center models, demonstrations, 
programs, and initiatives. This can includes name, start and end date, 
statutory or regulatory authority, keywords, stage of implementation, 
participants, beneficiaries and physicians impacted, and categories 
related to health care quality, cost, payment, and delivery. <br><br>
DOI: 10.15468/dl.shqfey
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.21.210_2",
 "TaxonKey is Piper auritum Kunth"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001919-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.td5e79
title: Occurrence Download

description: A dataset containing 810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cabomba caroliniana A.Gray)",
 "BasisOfRecord is one of (Human Observation)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 810 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001921-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29137754
title: TANNIN BLEND EFFECTS DAIRY COW METHANE EMISSIONS-Supplemental.docx

description: The objective of this study was to determine if a commercial feed additive blend composed of quebracho and chestnut tannins and saponins (<b>TAN</b>; SilvaFeed® BX) could reduce enteric GHG and ammonia (<b>NH</b><sub><strong>3</strong></sub>) emissions without negatively impacting the productive performance of dairy cows. Twenty mid-lactation Holstein dairy cows were blocked by DIM and parity in a randomized complete block design, and were assigned to one of two treatments: TAN (n=10) or control with no TAN (<b>CON</b>; n=10). The treatments were administered as a top dress at each of two daily feedings with TAN supplemented at a rate of 0.07% of dietary DM. Cow blocks were sampled for enteric gaseous emissions in head chambers (<b>HC</b>) for a 12-h period on their respective treatment days 0, 16, 32, and 48. After the enteric emission sampling period concluded, collected urine and manure were combined into a manure slurry at 1:1.7 (urine wt:feces wt) per cow. Manure slurry methane (<b>CH</b><sub><strong>4</strong></sub>), carbon dioxide (<b>CO</b><sub><strong>2</strong></sub>), nitrous oxide (<b>N</b><sub><strong>2</strong></sub><b>O</b>), and NH<sub>3</sub> emissions were measured for 24-h. Supplemental TAN decreased enteric production (g/HC period or mg/HC period gas) of CH<sub>4</sub>, CO<sub>2</sub>, and N<sub>2</sub>O over the trial period, and tended to increase NH<sub>3</sub> production in TAN-supplemented cows. Gaseous emission yield (g or mg gas/kg HC DM intake) did not differ between TAN- and CON-supplemented cows for CH<sub>4</sub>, CO<sub>2,</sub> or N<sub>2</sub>O, though TAN-supplemented cows had greater NH<sub>3</sub> yield. Methane, CO<sub>2</sub>, N<sub>2</sub>O, and NH<sub>3</sub> intensity (g or mg gas/kg PM energy-corrected milk) were not affected by TAN-supplementation. Supplemental TAN did not impact slurry GHG emissions, though it increased NH<sub>3</sub> emissions. No differences in energy-corrected milk, milk fat yield, milk protein yield, and DMI in TAN- vs. CON-supplemented cows were noted.
DOI: 10.6084/m9.figshare.29137754.v1
title: TANNIN BLEND EFFECTS DAIRY COW METHANE EMISSIONS-Supplemental.docx

description: The objective of this study was to determine if a commercial feed additive blend composed of quebracho and chestnut tannins and saponins (<b>TAN</b>; SilvaFeed® BX) could reduce enteric GHG and ammonia (<b>NH</b><sub><strong>3</strong></sub>) emissions without negatively impacting the productive performance of dairy cows. Twenty mid-lactation Holstein dairy cows were blocked by DIM and parity in a randomized complete block design, and were assigned to one of two treatments: TAN (n=10) or control with no TAN (<b>CON</b>; n=10). The treatments were administered as a top dress at each of two daily feedings with TAN supplemented at a rate of 0.07% of dietary DM. Cow blocks were sampled for enteric gaseous emissions in head chambers (<b>HC</b>) for a 12-h period on their respective treatment days 0, 16, 32, and 48. After the enteric emission sampling period concluded, collected urine and manure were combined into a manure slurry at 1:1.7 (urine wt:feces wt) per cow. Manure slurry methane (<b>CH</b><sub><strong>4</strong></sub>), carbon dioxide (<b>CO</b><sub><strong>2</strong></sub>), nitrous oxide (<b>N</b><sub><strong>2</strong></sub><b>O</b>), and NH<sub>3</sub> emissions were measured for 24-h. Supplemental TAN decreased enteric production (g/HC period or mg/HC period gas) of CH<sub>4</sub>, CO<sub>2</sub>, and N<sub>2</sub>O over the trial period, and tended to increase NH<sub>3</sub> production in TAN-supplemented cows. Gaseous emission yield (g or mg gas/kg HC DM intake) did not differ between TAN- and CON-supplemented cows for CH<sub>4</sub>, CO<sub>2,</sub> or N<sub>2</sub>O, though TAN-supplemented cows had greater NH<sub>3</sub> yield. Methane, CO<sub>2</sub>, N<sub>2</sub>O, and NH<sub>3</sub> intensity (g or mg gas/kg PM energy-corrected milk) were not affected by TAN-supplementation. Supplemental TAN did not impact slurry GHG emissions, though it increased NH<sub>3</sub> emissions. No differences in energy-corrected milk, milk fat yield, milk protein yield, and DMI in TAN- vs. CON-supplemented cows were noted.
DOI: 10.15468/dl.f94xad
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.9648 28.8496,-0.0352 28.8496,-0.0352 19.8496,8.9648 19.8496,8.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010335-250525065834625/datasets/export for details.
DOI: 10.15468/dl.wy58vm
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex acetosella L.",
 "Country is Hungary"
 ]
}

 The dataset includes 73 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010334-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9ez3x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-10.6036 29.6447,-11.635 28.8496,-9.0352 28.8496,-9.0352 33.4562,-9.6631 32.8696,-9.7766 32.3158,-10.3241 31.5424,-10.3942 30.6542,-10.1716 30.2225,-10.6036 29.6447))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010465-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tyhru
title: Occurrence Download

description: A dataset containing 990688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "GadmGid is one of (COL.18_2, COL.9_2)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 990688 records from 598 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010437-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7514128
title: Model output used in the manuscript "Seasonality in carbon flux attenuation explains spatial variability in transfer efficiency"

description: This *.zip file contains the model output from seasonal variability experiments using the NPZD-DOP GEOMAR biogeochemical model (Kriest et al., 2010) coupled with the MITgcm 2.8deg ocean circulation via the transport matrix method (Khatiwala et al., 2005; Khatiwala, 2007; Khatiwala, 2018).

These model outputs are presented and discussed in the Preprint "Seasonality in carbon flux attenuation explains spatial variability in transfer efficiency", published by Geophysical Research Letters (de Melo Viríssimo et al., 2024). The manuscript describes the experiments performed, the parameter values used and the modifications done to the original model. For this matter, we also refer you to de Melo Viríssimo et al. (2022).

All files uploaded were generated from simulations run by the authors, except: the grid file, the salinity field, and the temperature field, which came with the model; and the density fields, who were computed from the MITgcm 2.8deg transport matrix by Dr Rafaelle Bernadello, using a TEOS-10 Matlab routine (http://www.teos-10.org/).

For specific information about each file uploaded, please refer to the README file. If you have any questions, please feel free to contact me.
description: Jamie D. Wilson acknowledges support from the AXA Research Fund.
DOI: 10.5281/zenodo.7514129
title: Model output used in the manuscript "Seasonality in carbon flux attenuation explains spatial variability in transfer efficiency"

description: This *.zip file contains the model output from seasonal variability experiments using the NPZD-DOP GEOMAR biogeochemical model (Kriest et al., 2010) coupled with the MITgcm 2.8deg ocean circulation via the transport matrix method (Khatiwala et al., 2005; Khatiwala, 2007; Khatiwala, 2018).

These model outputs are presented and discussed in the Preprint "Seasonality in carbon flux attenuation explains spatial variability in transfer efficiency", published by Geophysical Research Letters (de Melo Viríssimo et al., 2024). The manuscript describes the experiments performed, the parameter values used and the modifications done to the original model. For this matter, we also refer you to de Melo Viríssimo et al. (2022).

All files uploaded were generated from simulations run by the authors, except: the grid file, the salinity field, and the temperature field, which came with the model; and the density fields, who were computed from the MITgcm 2.8deg transport matrix by Dr Rafaelle Bernadello, using a TEOS-10 Matlab routine (http://www.teos-10.org/).

For specific information about each file uploaded, please refer to the README file. If you have any questions, please feel free to contact me.
description: Jamie D. Wilson acknowledges support from the AXA Research Fund.
DOI: 10.15468/dl.wgadmq
title: Occurrence Download

description: A dataset containing 9720419 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Peru"
 ]
}

 The dataset includes 9720419 records from 2349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014261-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1088113
title: Images from a Building Survey at Tunhill, Widecombe, Devon 2019

description: This collection comprises site photographs from a building recording survey and watching brief carried out at Tunhill, Widecombe between May and December 2019 during consolidation and modernisation works.
DOI: 10.15468/dl.rmntcm
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lagidium peruanum",
 "Year 1960-2025"
 ]
}

 The dataset includes 98 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025485-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2486ux
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lactarius deliciosus"
 ]
}

 The dataset includes 100 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006615-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsjh7p
title: Occurrence Download

description: A dataset containing 1482528 species occurrences available in GBIF matching the query:
{
 "StateProvince" : [
 "is Grand Est"
 ]
}

 The dataset includes 1482528 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006566-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/mrdbhy5k8c
title: Panji Jaya Kusuma: A Classical Javanese Literary Tale from Java, Indonesia

description: The story of Panji Jayakusuma is one of the episodes from a classic tale that developed between the 11th and 14th centuries, during the final period of the Hindu-Buddhist era in Java. Unlike other classical epics of that time or earlier periods, the Panji narrative emerged from and within the context of local Javanese culture.

The Panji Tale is a classic work of Javanese literature that developed during the Majapahit period. It became very popular in the lives of people across the Nusantara (Indonesian archipelago) and Southeast Asia from ancient times until today. This is evident from the numerous variants of the Panji Tale that have been documented, both in the form of ancient manuscripts and oral traditions that have spread as far as Southeast Asia. In the life of Nusantara society, the presence of the Panji Tale holds a very special place. Unlike many kakawin (epic poems) influenced by Indian epics, the Panji Tale is an original story that originated in Java. It tells of Javanese knights with settings in Javanese kingdoms, not Indian ones. The Panji Tale, with its many variants, typically takes place in East Javanese kingdoms during the period of around the 10th to 16th centuries. Due to its popularity, Panji stories have been found in various forms across regions and cultures up to the present day. They appear in performances, written texts, temple reliefs, oral traditions, and even digital media.
DOI: 10.17632/s492jnzgbb
title: Data for: Sex & the City. Are Financial Decisions Driven by Emotions?
DOI: 10.6084/m9.figshare.16943824.v4
title: Data & Scripts Figure S2

description: Data and scripts to generate Supplementary Figure S2.<br>