cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4419878
title: Data for investigating structural complexity of individual Scots pine trees

description: Tree functional traits together with processes such as forest regeneration, growth, and mortality affect forest and tree structure. Forest management inherently impacts these processes. Moreover, forest structure, biodiversity, resilience, and carbon uptake can be sustained and enhanced with forest management activities. To assess structural complexity of individual trees, comprehensive and quantitative measures are needed, and they are often lacking for current forest management practices. Fractal analysis and a single scale, independent metric called box dimension offer means for assessing structural complexity of individual trees. Terrestrial laser scanning (TLS) point clouds provide three-dimensional (3D) information on trees that can be utilized in generating the box dimension metric. This data set includes information needed for generating the box dimension from 741 individual Scots pine (<em>Pinus sylvestris</em> L.) trees from 9 sample plots with different thinning treatments located in southern boreal forests. The thinning treatments include two intensities of thinning and control treatment (i.e., no thinning treatment since the establishment). The data set can be used in characterizing structural complexity of individual Scots pine trees of various size as well as assessing effects of various thinning treatments on it. Please see the data descriptor for more information on the data structure and its possibilities. Please keep the designated corresponding author informed of any plans to use the data. Consultation or collaboration with the original investigators is strongly encouraged. Publications and data products that make use of the data must include proper acknowledgement.
description: The data production was also funded by the Academy of Finland project 330422 and BELSPO (Belgian Science Policy Office) in the frame of the STEREO III programme – project 3D-FOREST (SR/02/355).
description: {"references": ["Saarinen, N., Calders, K., Kankare, V., Yrttimaa, T., Junttila, S., Huuskonen, S., Hynynen, J., Verbeeck, H. 2020. Understanding 3D structural complexity of individual Scots pine trees with different management history. Authorea. November 6, 2020. https://doi.org/10.22541/au.160464261.10212997/v1"]}
DOI: 10.5281/zenodo.4419877
title: Data for investigating structural complexity of individual Scots pine trees

description: Tree functional traits together with processes such as forest regeneration, growth, and mortality affect forest and tree structure. Forest management inherently impacts these processes. Moreover, forest structure, biodiversity, resilience, and carbon uptake can be sustained and enhanced with forest management activities. To assess structural complexity of individual trees, comprehensive and quantitative measures are needed, and they are often lacking for current forest management practices. Fractal analysis and a single scale, independent metric called box dimension offer means for assessing structural complexity of individual trees. Terrestrial laser scanning (TLS) point clouds provide three-dimensional (3D) information on trees that can be utilized in generating the box dimension metric. This data set includes information needed for generating the box dimension from 741 individual Scots pine (<em>Pinus sylvestris</em> L.) trees from 9 sample plots with different thinning treatments located in southern boreal forests. The thinning treatments include two intensities of thinning and control treatment (i.e., no thinning treatment since the establishment). The data set can be used in characterizing structural complexity of individual Scots pine trees of various size as well as assessing effects of various thinning treatments on it. Please see the data descriptor for more information on the data structure and its possibilities. Please keep the designated corresponding author informed of any plans to use the data. Consultation or collaboration with the original investigators is strongly encouraged. Publications and data products that make use of the data must include proper acknowledgement.
description: The data production was also funded by the Academy of Finland project 330422 and BELSPO (Belgian Science Policy Office) in the frame of the STEREO III programme – project 3D-FOREST (SR/02/355).
description: {"references": ["Saarinen, N., Calders, K., Kankare, V., Yrttimaa, T., Junttila, S., Huuskonen, S., Hynynen, J., Verbeeck, H. 2020. Understanding 3D structural complexity of individual Scots pine trees with different management history. Authorea. November 6, 2020. https://doi.org/10.22541/au.160464261.10212997/v1"]}
DOI: 10.17037/data.00001994
title: Data for: "The nutritional status of children living within institutionalized care: a retrospective analysis with control charts for program monitoring"

description: Dataset used to perform an analysis of the nutritional status of children participating in Holt International's Child Nutrition Program. This record is provided to record the existence of the dataset and act as a point of contact with the study authors. However, the dataset itself is managed by Holt International and has not been submitted to this digital repository. Researchers wishing to access anonymised data and associated protocols should contact Holt International via their website.
DOI: 10.5281/zenodo.4419900
title: Data from "Single strain control of microbial consortia"

description: Plasmid maps of the plasmids presented in the manuscript "Single strain control of microbial consortia"
DOI: 10.5281/zenodo.4419906
title: dodwyer-lung/TLR_lung_microbiota_cage: Supplemental_data_TLR_lung_microbiota_project

description: First relase for supplemental figures and dat for project - includes supplemental figures, metadata , taxonomy and 16S raw counts
DOI: 10.5281/zenodo.4419880
title: Demo dataset for DECNEO

description: Demo dataset for DECNEO (10.5281/zenodo.4417915)
DOI: 10.5281/zenodo.4419879
title: Demo dataset for DECNEO

description: Demo dataset for DECNEO (10.5281/zenodo.4417915)
DOI: 10.6084/m9.figshare.13521674
title: CellChat object of humanSkin_NL

description: CellChat object after running CellChat to a scRNA-seq data on cells from nonlesional (NL, normal) human skin from patients.
DOI: 10.5517/ccdc.csd.cc21lsl1
title: CCDC 1894893: Experimental Crystal Structure Determination

description: Related Article: Leonard Pasqualini, Oliver Janka, Selina Olthof, Hubert Huppertz, Klaus Liedl, Rainer Pöttgen, Maren Podewitz, Jörn Bruns|2020|Chem.-Eur.J.|26|17405|doi:10.1002/chem.202002221
DOI: 10.5281/zenodo.4415643
title: Applying RGB- and Thermal-Based Vegetation Indices from UAVs for High-Throughput Field Phenotyping of Drought Tolerance in Forage Grasses

description: Basic data from publication https://doi.org/10.3390/rs13010147 <strong>All_TDRdata.csv</strong> contains the data from 48 TDR sensors (30 cm) installed in the three rainout shelters. Sensors 1 - 18 were installed vertically to obtain soil moisture content averaged over the 10 - 40 cm profile, on 6 locations per shelter Sensors 19-21 were installed diagonally to obtain soil moisture content averaged over the 20 - 40 cm profile on one location per shelter Sensors 22-24 were installed diagonally to obtain soil moisture content averaged over the 40 - 60 cm profile on one location per shelter Sensors 25-27 were installed horizontally to obtain soil moisture content at 10 cm depth on one location per shelter Sensors 28-30 were installed horizontally to obtain soil moisture content at 20 cm depth on one location per shelter Sensors 31-33 were installed horizontally to obtain soil moisture content at 30 cm depth on one location per shelter Sensors 34-36 were installed horizontally to obtain soil moisture content at 40 cm depth on one location per shelter Sensors 37-39 were installed horizontally to obtain soil moisture content at 50 cm depth on one location per shelter Sensors 40-42 were installed horizontally to obtain soil moisture content at 60 cm depth on one location per shelter Sensors 43-45 were installed horizontally to obtain soil moisture content at 70 cm depth on one location per shelter Sensors 46-48 were installed horizontally to obtain soil moisture content at 80 cm depth on one location per shelter Climate.txt contains the daily averaged microclimatic data PhenotypingData.csv contains the phenotypic data from the UAV flights and the breeder scores
DOI: 10.5281/zenodo.4415642
title: Applying RGB- and Thermal-Based Vegetation Indices from UAVs for High-Throughput Field Phenotyping of Drought Tolerance in Forage Grasses

description: Basic data from publication https://doi.org/10.3390/rs13010147 <strong>All_TDRdata.csv</strong> contains the data from 48 TDR sensors (30 cm) installed in the three rainout shelters. Sensors 1 - 18 were installed vertically to obtain soil moisture content averaged over the 10 - 40 cm profile, on 6 locations per shelter Sensors 19-21 were installed diagonally to obtain soil moisture content averaged over the 20 - 40 cm profile on one location per shelter Sensors 22-24 were installed diagonally to obtain soil moisture content averaged over the 40 - 60 cm profile on one location per shelter Sensors 25-27 were installed horizontally to obtain soil moisture content at 10 cm depth on one location per shelter Sensors 28-30 were installed horizontally to obtain soil moisture content at 20 cm depth on one location per shelter Sensors 31-33 were installed horizontally to obtain soil moisture content at 30 cm depth on one location per shelter Sensors 34-36 were installed horizontally to obtain soil moisture content at 40 cm depth on one location per shelter Sensors 37-39 were installed horizontally to obtain soil moisture content at 50 cm depth on one location per shelter Sensors 40-42 were installed horizontally to obtain soil moisture content at 60 cm depth on one location per shelter Sensors 43-45 were installed horizontally to obtain soil moisture content at 70 cm depth on one location per shelter Sensors 46-48 were installed horizontally to obtain soil moisture content at 80 cm depth on one location per shelter Climate.txt contains the daily averaged microclimatic data PhenotypingData.csv contains the phenotypic data from the UAV flights and the breeder scores
DOI: 10.5281/zenodo.4419941
title: Apuan Alps floristic dataset

description: This dataset has been realized starting from the flora of Apuan Alps ("Prodromo alla flora della Regione Apuana" Ferrarini & Marchetti 1994, Ferrarrini et al. 1997, Ferrarrini 2000) and has been analysed in Di Musciano et al. (under review on Frontiers in Biogeography).
DOI: 10.5281/zenodo.4419940
title: Apuan Alps floristic dataset

description: This dataset has been realized starting from the flora of Apuan Alps ("Prodromo alla flora della Regione Apuana" Ferrarini & Marchetti 1994, Ferrarrini et al. 1997, Ferrarrini 2000) and has been analysed in Di Musciano et al. (under review on Frontiers in Biogeography).
DOI: 10.17632/xgcvsh65fh.1
title: Data for: The potential of exact sequence variants (ESVs) to interpret and assess the impact of agricultural pressures on stream diatom assemblages revealed by DNA metabarcoding

description: These data contains the supplementary material for the manuscript entitled "The potential of exact sequence variants (ESVs) to interpret and assess the impact of agricultural pressures on stream diatom assemblages revealed by DNA metabarcoding"
DOI: 10.6084/m9.figshare.13522655
title: CellChat object of humanSkin_LS

description: CellChat object of humanSkin_LS
DOI: 10.25919/fp4m-hc47
title: Parkes observations for project P595 semester 2020OCTS_03

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the FERMI Gamma ray mission, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.25318/2510007901-eng
title: Consolidated Energy Statistics

description: Monthly primary and secondary energy by fuel type in terajoules (coal, natural gas, electricity, etc.) and supply and demand characteristics (production, exports, imports, etc.) for Canada.
DOI: 10.5066/p9my5240
title: Hakalau Forest NWR seed rain, seedling, and plant data for 2017-2019

description: This data release includes data and metadata on tree and shrub basal area as well as bird-mediated and passive seed rain for sites selected to have a range of understory cover under canopy trees (Metrosideros polymorpha and Acacia koa). It also includes seedling germination and survival data for a large-scale seed addition and grass removal experiment that varied both seed rain and grass cover. All sites were within Hakalau Forest National Wildlife Refuge on Hawaii Island. Broadly, this study asks what thresholds of seed rain and native and exotic plant cover are needed for passive forest regeneration.
DOI: 10.25739/frmv-wj25
title: GenomesToFields 2014-2017 Datasets

description: Data types in this directory tree are: hybrid and inbred agronomic and performance traits; inbred genotypic data; soil data and environmental data collected from the Genomes To Fields (G2F) project sites in the 2014, 2015, 2016 and 2017 seasons. G2F has developed a living infrastructure of researchers across disciplines and a network of field phenotyping sites. During the four growing seasons, G2F has conducted experiments in over 55,000 plots across 68 unique locations with 38 Principal Investigators. The overall goal is leveraging these datasets to improve phenomic predictability and facilitate the development and deployment of tools and resources that help address fundamental problems of sustainable agricultural productivity.
DOI: 10.25318/2510007901-fra
title: Statistiques consolidées de l'énergie

description: Énergie primaire et secondaire mensuelle par type de combustible en térajoules (charbon, gaz naturel, électricité, etc.) et selon les caractéristiques de disponibilité et d'écoulement (production, exportations, importations, etc.) pour le Canada.
DOI: 10.5281/zenodo.4419977
title: Response Rates to Anti–PD-1 Immunotherapy in Microsatellite-Stable Solid Tumors With 10 or More Mutations per Megabase

description: This dataset has been used to analyze the association between tumor mutational burden and response to treatment in immunotherapy-treated patients with microsatellite-stable solid tumors. The dataset contains clinical and genomic data for 1,678 patients with 16 cancer types.
DOI: 10.5281/zenodo.4419976
title: Response Rates to Anti–PD-1 Immunotherapy in Microsatellite-Stable Solid Tumors With 10 or More Mutations per Megabase

description: This dataset has been used to analyze the association between tumor mutational burden and response to treatment in immunotherapy-treated patients with microsatellite-stable solid tumors. The dataset contains clinical and genomic data for 1,678 patients with 16 cancer types.
DOI: 10.25318/3310027301-eng
title: Business or organization obstacles over the last three months, by business characteristics

description: Obstacles faced by the business or organization over the last three months, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership.
DOI: 10.25318/3310027301-fra
title: Obstacles rencontrés par l’entreprise ou l’organisme au cours des trois derniers mois, selon les caractéristiques de l’entreprise

description: Obstacles rencontrés par l'entreprise ou l'organisme au cours des trois derniers mois, selon le code du Système de classification des industries de l'Amérique du Nord (SCIAN), l'effectif de l'entreprise, le type d'entreprise, l'activité commerciale et la participation majoritaire.
DOI: 10.6084/m9.figshare.13522700
title: data .xlsx

description: This archive contains the database underlying the analyses presented in the manuscript titled: 'Food and temperature change photoperiodic responses in two vole species: different roles for hypothalamic genes', by van Rosmalen and Hut.The database includes experimental information and qPCR results for anterior and posterior hypothalamic areas for all animals used in this experiment.
DOI: 10.6084/m9.figshare.13522700.v1
title: data .xlsx

description: This archive contains the database underlying the analyses presented in the manuscript titled: 'Food and temperature change photoperiodic responses in two vole species: different roles for hypothalamic genes', by van Rosmalen and Hut.The database includes experimental information and qPCR results for anterior and posterior hypothalamic areas for all animals used in this experiment.
DOI: 10.6084/m9.figshare.5840736
title: Spalax TCR dataset

description: Spalax TCR data
DOI: 10.5281/zenodo.4419997
title: Autofluorescence-Free In Vivo Imaging Using Polymer-Stabilized Nd3+-Doped YAG Nanocrystals

description: Neodymium-doped yttrium aluminum garnet (YAG:Nd<sup>3+</sup>) has been widely developed during roughly the last sixty years and has been an outstanding fluorescent material. It has been considered as the gold standard among multipurpose solid-state lasers. Yet, the successful downsizing of this system into the nano regimen has been elusive, so far. Indeed, the synthesis of a garnet structure at the nanoscale, with enough crystalline quality for optical applications was found to be quite challenging. Here, we present an improved solvothermal synthesis method producing YAG:Nd<sup>3+</sup> nanocrystals of remarkably good structural quality. Adequate surface functionalization using asymmetric double-hydrophilic block copolymers, constituted of a metal-binding block and a neutral water soluble block, provides stabilized YAG:Nd<sup>3+</sup> nanocrystals with a long term colloidal stability in aqueous suspensions. These newly stabilized nanoprobes keep the spectroscopic quality (long lifetimes, narrow emission lines, and large Stokes shift) characteristic of bulk YAG:Nd<sup>3+</sup>. The narrow emission lines of YAG:Nd<sup>3+</sup> nanocrystals are exploited by differential infrared fluorescence imaging, thus achieving an autofluorescence-free <em>in vivo</em> readout. In addition, nanothermometry measurements, based on the ratiometric fluorescence of the stabilized YAG:Nd<sup>3+</sup> nanocrystals, are demonstrated. The progress here reported paves the way for the implementation of this new stabilized YAG:Nd<sup>3+</sup> system in the preclinical arena.
DOI: 10.5281/zenodo.4419996
title: Autofluorescence-Free In Vivo Imaging Using Polymer-Stabilized Nd3+-Doped YAG Nanocrystals

description: Neodymium-doped yttrium aluminum garnet (YAG:Nd<sup>3+</sup>) has been widely developed during roughly the last sixty years and has been an outstanding fluorescent material. It has been considered as the gold standard among multipurpose solid-state lasers. Yet, the successful downsizing of this system into the nano regimen has been elusive, so far. Indeed, the synthesis of a garnet structure at the nanoscale, with enough crystalline quality for optical applications was found to be quite challenging. Here, we present an improved solvothermal synthesis method producing YAG:Nd<sup>3+</sup> nanocrystals of remarkably good structural quality. Adequate surface functionalization using asymmetric double-hydrophilic block copolymers, constituted of a metal-binding block and a neutral water soluble block, provides stabilized YAG:Nd<sup>3+</sup> nanocrystals with a long term colloidal stability in aqueous suspensions. These newly stabilized nanoprobes keep the spectroscopic quality (long lifetimes, narrow emission lines, and large Stokes shift) characteristic of bulk YAG:Nd<sup>3+</sup>. The narrow emission lines of YAG:Nd<sup>3+</sup> nanocrystals are exploited by differential infrared fluorescence imaging, thus achieving an autofluorescence-free <em>in vivo</em> readout. In addition, nanothermometry measurements, based on the ratiometric fluorescence of the stabilized YAG:Nd<sup>3+</sup> nanocrystals, are demonstrated. The progress here reported paves the way for the implementation of this new stabilized YAG:Nd<sup>3+</sup> system in the preclinical arena.
DOI: 10.25318/3310027401-eng
title: Percentage of workforce teleworking or working remotely, and percentage of workforce anticipated to continue primarily teleworking or working remotely after the pandemic, by business characteristics

description: Percentage of workforce teleworking or working remotely on August 31, 2020, and percentage of workforce expected to continue to primarily telework or work remotely after the COVID-19 pandemic, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership.
DOI: 10.6084/m9.figshare.13522748
title: Gene expression data

description: Gene expression data
DOI: 10.5281/zenodo.4419784
title: Biventricular statistical shape model of the human heart adapted for computer simulations

description: This is an adapted version of the biventricular statistical shape model from Bai et al. (2015) that can be used as a basis for computer simulations of cardiac electrophysiology or cardiac mechanics. The original model consists of disconnected surfaces of the left ventricular (LV) myocardium and the right ventricular (RV) blood pool. The surface of the RV blood pool was clipped at the base to add an orifice representing the RV in- and outlets. The resulting RV endocardial surface was shifted along its normals by a fixed wall thickness of 3 mm to obtain an RV epicardial surface. Then all surfaces were merged to form one closed surface of the biventricular myocardium. This surface was remeshed using Instant Meshes (Jakob et al., 2015) and tetrahedralized using Gmsh (Geuzaine. et al., 2009), resulting in the following two meshes of the mean shape: <strong>heart_sur.vtp:</strong><br> Triangle mesh with 100 k nodes, 200 k elements, mean edge length: 0.83 mm.<br> This mesh contains a point data array 'class' labeling the following regions: base (1), epicardium (2), LV endocardium (3), RV endocardium (4), apex (5). <strong>heart_vol.vtu:</strong><br> Tetrahedral mesh with 479 k nodes, 2555 k elements, mean edge length: 0.82 mm. The principal components and variances of the 100 shape modes were Laplacian interpolated to the nodes of these new meshes and are stored in the following files: <strong>pc_sur.csv.gz</strong> or <strong>pc_sur.mat</strong>: 100 principal components corresponding to the nodes of heart_sur.vtp. <strong>pc_vol.csv.gz</strong> or <strong>pc_vol.mat</strong>: 100 principal components corresponding to the nodes of heart_vol.vtp. <strong>var.csv.gz</strong> or <strong>var.mat</strong>: 100 variances applicable to both meshes. Please be aware that the model does not include any variations in RV wall thickness.
description: {"references": ["Bai, W. et al. (2015). A bi-ventricular cardiac atlas built from 1000+ high resolution MR images of healthy subjects and an analysis of shape and motion. Med Image Anal 26(1):133\u201345.", "de Marvao, A. et al. (2014). Population-based studies of myocardial hypertrophy: high resolution cardiovascular magnetic resonance atlases improve statistical power. J Cardiovasc Magn Reson, 16:16.", "Jakob, W. et al. (2015). Instant field-aligned meshes. ACM Trans Graph, 34:1\u201315.", "Geuzaine, C. et al. (2009). Gmsh: A 3-d finite element mesh generator with built-in pre- and post-processing facilities. Int J Numer Methods Eng, 79:1309\u20131331."]}