cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.msbcc2g4t
title: Sample numbers for Dopamine Added Swimming Induced Paralysis (DA-SWIP) and sorting experiments under 6-hydroxydopamine (6-OHDA)

description: Caenorhabditis elegans (C. elegans) is an excellent model system to study
 neurodegenerative diseases, such as Parkinson’s disease, as it enables
 analysis of both neuron morphology and function in live animals. Multiple
 structural changes in neurons, such as cephalic dendrite morphological
 abnormalities, have been considered hallmarks of neurodegeneration in this
 model, but their relevance to changes in neuron function are not entirely
 clear. We sought to test whether hallmark morphological changes associated
 with chemically induced dopaminergic neuron degeneration, such as dendrite
 blebbing, breakage, and loss, are indicative of neuronal malfunction and
 result in changes in behavior. We adapted an established dopaminergic
 neuronal function assay by measuring paralysis in the presence of
 exogenous dopamine, which revealed clear differences between cat-2
 dopamine deficient mutants, wildtype worms, and dat-1 dopamine abundant
 mutants. Next, we integrated an automated image processing algorithm and a
 microfluidic device to segregate worm populations by their cephalic
 dendrite morphologies. We show that nematodes with dopaminergic dendrite
 degeneration markers, such as blebbing or breakage, paralyze at higher
 rates in a dopamine solution, providing evidence that dopaminergic
 neurodegeneration morphologies are correlated with functional neuronal
 outputs.
description: # Sample numbers for Dopamine Added Swimming Induced Paralysis (DA-SWIP)
 and sorting experiments under 6-hydroxydopamine (6-OHDA)
 [https://doi.org/10.5061/dryad.msbcc2g4t](https://doi.org/10.5061/dryad.msbcc2g4t) The table AUDDIT_Sorting_Table1_(1).xlsx contains sample numbers for experiments in this manuscript. This excel table includes four variables: A) Experiment, which details the test under analysis B) Group and Type, which relates to different treatment groups or genotypes C and D) Here N relates to the number of items described in column D. For instance, line 2 (N=9, Type = Proportion) means that 9 replicates were assayed, and the readout for each experiment is proportion (i.e., fraction of animals paralyzed). In line 19, for example, N=276, Type=Dendrites, this means that a total of 276 dendrites were analyzed for this experiment. E) Total animals. This column desribes how many animals were used in total to obtain the data for all experiments described in that line.
DOI: 10.5061/dryad.547d7wmfr
title: Dissociable neuronal substrates of feature attention and working memory

description: Attention and working memory (WM) are distinct cognitive functions, yet
 given their close interactions, it is often assumed that they share the
 same neuronal mechanisms. We show that in macaques performing a WM-guided
 feature attention task, the activity of most neurons in areas middle
 temporal (MT), medial superior temporal (MST), lateral intraparietal
 (LIP), and posterior lateral prefrontal cortex (LPFC-p) displays
 attentional modulation or WM coding, not both. One area thought to play a
 role in both functions is LPFC-p. To test this, we optogenetically
 inactivated LPFC-p bilaterally during different task periods. Attention
 period inactivation reduced attentional modulation in LPFC-p, MST, and LIP
 neurons, and impaired task performance. In contrast, WM period
 inactivation did not affect attentional modulation or performance and
 minimally affected WM coding. Our results suggest that feature attention
 and WM have dissociable neuronal substrates and that LPFC-p plays a
 critical role in feature attention but not in WM.
description: **README** The files in this repository include processed data and
 analysis code related to the study titled “Dissociable neuronal substrates
 of feature attention and working memory”, by Mendoza-Halliday and
 colleagues, published in Neuron. **Data File:** The file
 population_structure contains neuronal firing rate data. Data is divided
 into brain areas. Brain areas are numbered: LPFC-left = 1; LPFC-right = 2;
 MST = 3; LIP = 4; MT = 5; LPFC (left and right) = 7. For example,
 population_structure.brain_areas(3) contains data from MST. Neurons within
 each area are numbered. For example,
 population_structure.brain_areas(3).neurons(124) contains data from MST
 neuron 124. For a given neuron number N in brain area B, the trials array
 of mean firing rates (spikes/s) in a given condition C and task period P
 is here:
 pop_struct.brain_areas(B).neurons(N).conditions(C).task_periods(P).trials_matrices.firing_rate_task_period_MEAN Information for all task periods is here: pop_struct.task_periods Below is information for all conditions: * Conditions 8, 9, 10, 11 correspond to control trials (no opto) with cue directions 45, 135, 225, 315. * Conditions 12, 13, 14, 15 correspond to delay opto trials with cue directions 45, 135, 225, 315. * Conditions 16, 17, 18, 19 correspond to test opto trials with cue directions 45, 135, 225, 315. **Analysis Code:** To analyze the data and obtain figures, follow the following steps: A. Save population_structure file in your local computer B. Open MendozaHalliday_analysis1.m and in 'C:[path]\population_structure', replace [path] with the population_structure file path from your computer. C. Run analysis code MendozaHalliday_analysis1.m D. To obtain results/figures from auROC analyses, subsequently run analysis code MendozaHalliday_analysis2.m E. To obtain results/figures from optogenetic effects, run analysis code MendozaHalliday_analysis3.m
DOI: 10.5061/dryad.pc866t1wm
title: Mars nightside electron impact process frequency empirical model

description: With the aim of improving global simulations of the Martian ionosphere, we
 present an empirical model of 137 electron impact processes---including
 ionization, dissociation, and excitation---on the nightside of Mars, based
 on MAVEN in situ data collected between 2014 and December 2019.
description: # Mars nightside electron impact process frequency empirical model
 [https://doi.org/10.5061/dryad.pc866t1wm](https://doi.org/10.5061/dryad.pc866t1wm) The frequencies of 137 different electron impact processes in the Martian nightside ionosphere---including ionization, dissociation, and excitation---are modeled separately. Species considered are: CO_2, N_2, Ar, O, and CO. Model parameters are: magnetic field strength, magnetic elevation angle, magnetic topology, solar wind pressure, and altitude. Characterization of the degradation of electron precipitation as the altitude decreases and atmospheric density increases has been calculated using a weighted number density of neutrals as its basis, and used to adjust frequencies. This calculation is explained in more detail in a manuscript currently in prep. Magnetic topology types are described in Xu et al. 2019, though here "night closed" and "night void" topologies are combined. Topology type codes are: 0-undefined, 1-day closed, 2-cross terminator closed, 3-night closed, 5-open to day, 6-open to night, 7-draped. ## Description of the data and file structure Data is in text format, organized into columns separated by whitespace with a 2 line header at the top. Columns are: species (string, column width 4 characters); process(string, 30 chars); topology code (integer, 3 chars, described above); bottom, center, and top of altitude bin (3 integers, 5 chars each, in km); bottom, center, and top of solar wind pressure bin (3 floats, 13 chars each, in nPa); bottom, center, and top of magnetic field strength bin (3 floats, 13 chars each, in nT); bottom, center, and top of elevation angle bins (3 float, 7 chars each, in degrees); log10(ionization frequency fit) (float, 14 chars, in #/s) ## Sharing/Access information Data was derived from the following sources: * MAVEN Insitu Key Parameters Data Bundle ([https://pds-ppi.igpp.ucla.edu/search/view/?f=yes&id=pds://PPI/maven.insitu.calibrated)](https://pds-ppi.igpp.ucla.edu/search/view/?f=yes&id=pds://PPI/maven.insitu.calibrated\)) (LID = urn:nasa:pds:maven.insitu.calibrated)
DOI: 10.25625/1di3po
title: Turning decisions into actions

description: Editorial commentary not containing original data.
DOI: 10.15468/dl.hkuryj
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is BRA.13_1",
 "TaxonKey is Cheilanthes regnelliana"
 ]
}

 The dataset includes 29 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003820-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.4b8gthtk9
title: Data for: Genetic variants underlying human bisexual behavior are reproductively advantageous

description: Because human same-sex sexual behavior (SSB) is heritable and leads to
 fewer offspring, how SSB-associated alleles have persisted and whether
 they will remain in human populations are of interest. Using the UK
 Biobank, we address these questions separately for bisexual behavior (BSB)
 and exclusive SSB (eSSB) after confirming their genetic distinction. We
 discover that male BSB is genetically positively correlated with the
 number of offspring. This unexpected phenomenon is attributable to the
 horizontal pleiotropy of male risk-taking behavior-associated alleles,
 because male risk-taking behavior is genetically positively correlated
 with both BSB and the number of offspring and because genetically
 controlling male risk-taking behavior abolishes the genetic correlation
 between male BSB and the number of offspring. By contrast, eSSB is
 genetically negatively correlated with the number of offspring. Our
 results suggest that male BSB-associated alleles are likely reproductively
 advantageous, which may explain their past persistence and predict their
 future maintenance, and that eSSB-associated alleles are likely being
 selected against at present.
description: # GWAS summary statistics and codes of the paper "Genetic variants
 underlying human bisexual behavior are reproductively advantageous"
 GWAS summary statistics
 obtained using Regenie for 8 traits: same-sex sexual behavior (SSB),
 bisexual behavior (Bisexuality), exclusive same-sex sexual behavior
 (Exclusive_SSB), childlessness (Childless), number of children
 (N_children), number of children among individuals with at least one child
 (N_children_nonchildless), number of sexual partners among individuals
 that only performed opposite-sex sexual behavior (N_Partners_OSB),
 risk-taking behavior (risk_taking). genomicSEM.R: the script performs
 Genomic SEM analysis. To understand the script, see
 \
 Family-based_heritability.ipynb: the script estimates family-based
 heritability of traits using UKB relative pairs data.
DOI: 10.5061/dryad.vdncjsz2b
title: Data from: An insight into vitamin E and lipid nutrition of the plains-wanderer Pedionomus torquatus

description: Vitamin E, as α-tocopherol, is an essential antioxidant protecting the
 body from free radicals. The vitamin E requirement of managed wildlife
 species is known to be greater than their wild counterparts, predominantly
 due to higher dietary lipid content and potentially stressful
 environments. The plains-wanderer (Pedionomus torquatus, Family
 Pedionomidae [monotypical]) is a critically endangered, superficially
 quail-like bird that is the focus of an ongoing captive breeding program
 in Australia. It is estimated that plains-wanderers have a high vitamin E
 requirement (compared to domestic poultry species) to offset a high lipid
 diet and their naturally flighty temperament. This study therefore aims to
 gain a greater understanding of the nutritional status and vitamin E
 requirements of plains-wanderers in managed environments. Total lipid and
 α-tocopherol intake were quantified for 26 zoo-managed plains-wanderers
 over a series of diet intake trials in addition to measurement of plasma
 α-tocopherol and cholesterol concentrations. Plains-wanderers that
 consumed higher portions of dietary fat had significantly lower
 circulating α-tocopherol concentrations than birds that consumed lower
 total dietary fat (p &lt; 0.001). Additionally, plasma cholesterol
 concentrations of managed plains-wanderers were found to be significantly
 greater than all other bird species reviewed, irrespective of Family or
 feeding type. We also present the first published data quantifying the
 nutritional makeup of stomach contents of a wild plains-wanderer for use
 as a potential guide for diet formulation. This study forms a vital
 foundational insight into the nutritional management of plains-wanderers,
 but further research is required to understand their dietary habits and
 cholesterol metabolism.  
description: # Data from: An insight into vitamin E and lipid nutrition of the
 plains-wanderer Pedionomus torquatus
 ## Description of the data
 and file structure File 1 provides intake measurements per food item or
 individual incorporating protein (g), protein (%), protein energy (kcal),
 fat (g), fat (%), fat energy (kcal), carbohydrate (g), carbohydrate (%),
 carbohydrate energy (kcal), as described in the corresponding manuscript.
 File 2 provides a-tocopherol (ug/ml) and cholesterol (mmol/L) measurements
 per individual. Sample IDs are matched across the two files.
DOI: 10.5061/dryad.w0vt4b8zt
title: PAK3 downregulation induces cognitive impairment following cranial irradiation

description: Cranial irradiation is used for prophylactic brain radiotherapy as well as
 treatment of primary brain tumors. Despite its high efficiency, it often
 induces unexpected side effects, including cognitive dysfunction. Herein,
 we observed that mice exposed to cranial irradiation exhibited cognitive
 dysfunction, including altered spontaneous behavior, decreased spatial
 memory, and reduced novel object recognition. Analysis of actin
 cytoskeleton revealed that ionizing radiation (IR) disrupted the
 filamentous/globular actin (F/G-actin) ratio and downregulated the actin
 turnover signaling pathway p21-activated kinase 3 (PAK3)-LIM kinase 1
 (LIMK1)-cofilin. Furthermore, we found that IR could upregulate
 microRNA-206-3p (miR-206-3p) targeting PAK3. As the inhibition of
 miR-206-3p through antagonist (antagomiR), IR-induced disruption of PAK3
 signaling is restored. In addition, intranasal administration of
 antagomiR-206-3p recovered IR-induced cognitive impairment in mice. Our
 results suggest that cranial irradiation-induced cognitive impairment
 could be ameliorated by regulating PAK3 through antagomiR-206-3p, thereby
 affording a promising strategy for protecting cognitive function during
 cranial irradiation, and promoting quality of life in patients with
 radiation therapy.
description: # PAK3 downregulation induces cognitive impairment following cranial
 irradiation This database
 contains Western Blot data for PAK3-LIMK1-cofilin signaling and F/G-actin.
 We have conducted experiments on differentiated human neuron, primary
 cultured mouse neurons, and directly irradiated mice, followed by protein
 sampling. This allowed us to observe changes at the protein level. ##
 Description of the data and file structure Our database comprises
 approximately 100 Western blot band files, all in TIFF format. Each
 Western blot experiment was conducted with three biological replicates to
 ensure reliability and reproducibility of the results. ## Sharing/Access
 information For those requiring additional data or having queries, please
 feel free to contact us via email at .
DOI: 10.18738/t8/jb5odh
title: Tooley & Dawkins Data

description: Data from two cross-domain priming experiments that failed to show significant cross-domain structural priming effects.
DOI: 10.15468/dl.uxa9zz
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Julbernardia unijugata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 38 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003823-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/u43vdx
title: Systematics of the Jaguar catfish genus Liosomadoras Fowler, 1940 (Auchenipteridae: Siluriformes)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Birindelli, José L. O., Zuanon, Jansen (2012): Systematics of the Jaguar catfish genus Liosomadoras Fowler, 1940 (Auchenipteridae: Siluriformes). Neotropical Ichthyology 10 (1): 1-11, DOI: 10.1590/S1679-62252012000100001, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000100001&lng=en&tlng=enLiosomadoras Fowler, 1940 includes two nominal species: L. oncinus, described from the rio Negro in Brazil, and L. morrowi described from the Peruvian Amazon. Both species are known from only few specimens deposited in fish collections, and information on these fishes is scarce. In order to rectify this situation, diagnoses of the genus and its species and an osteological description of L. oncinus are presented based on recently collected specimens. In addition, the taxonomy of the species of Liosomadoras is reviewed, and L. morrowi is confirmed as distinct from L. oncinus, and also distributed in the Brazilian Amazon. Liosomadoras is hypothesized as a relatively basal genus within Auchenipterinae, sister to all other species of the group, except Asterophysus batrachus and Tocantinsia piresi.Liosomadoras Fowler, 1940 inclui duas espécies nominais: L. oncinus, descrita a partir de exemplares coletados no rio Negro no Brasil, e L. morrowi descrita da Amazônia Peruana. Ambas espécies são conhecidas a partir de poucos exemplares depositados em coleções, e informações sobre esses peixes são raras. Com o intuito de remediar esta situação, diagnoses do gênero e de suas espécies, e uma descrição osteológica de L. oncinus, são apresentadas com base em exemplares recentemente coletados. Além disso, a taxonomia das espécies de Liosomadoras é revista, e L. morrowi é confirmada como distinta de L. oncinus e também distribuída na Amazônia brasileira. Liosomadoras é considerado um gênero relativamente basal em Auchenipterinae, grupo irmão das demais espécies da subfamília, exceto Asterophysus batrachus e Tocantinsia piresi.
DOI: 10.5061/dryad.xd2547dq3
title: Competition for nitrogen between plants and microorganisms in grasslands: Effect of nitrogen application rate and plant acquisition strategy

description: Several studies have investigated how nitrogen (N) addition changes N
 competition between focal plant species and soil microorganisms; still,
 the impact on community-level plant-microbial N competition and the
 underlying mechanisms remain unclear. We conducted a short-term (4
 h) 15N labeling experiment in an alpine meadow subjected to 7
 years of NH4NO3 additions (0, 5, 10, and 15 g N m−2 year−1), by monitoring
 changes in soil properties (e.g., pH, Al3+, NH4+, NO3−), microbial biomass
 (MB), plant community composition, root traits (e.g., root length, root
 area, specific root length), as well as the plant (nine focal species and
 at the community level) and microbial N uptake. Change in the N
 competition between the nine focal plant species and microorganisms
 following N addition depended on the species. At the community level, the
 N addition rate did not affect plant-microbial competition for NH4 + and
 NO3 − (P &gt; 0.05). Nitrogen addition directly decreased 
 NH4+competition (β= −0.700) but indirectly increased because of improved
 plant uptake due to increased N availability(β=1.214). Competition for
 NO3− was dependent on microbial uptake (β= −0.953) and was influenced by
 opposing effects of increased N availability (β=1.342) and reduced MB (β=
 −0.439). Thus, the effects of increased soil N availability and suppressed
 MB on plant and microbial N competition offset each other, while the plant
 community had a negligible impact. Such responses should be taken into
 account for better predictions of the effect of N addition on net primary
 productivity and ecosystem stability.
description: # Competition for nitrogen between plants and microorganisms in
 grasslands: effect of nitrogen application rate and plant acquisition
 strategy # Description of
 the data and file structure N form - N form of plant uptake AM- N form of
 NH4+ NT- N form of NO3- N addition rate - Nitrogen addition treatment: 0,
 5, 10, and 15 g N m-2 year-1 Rep Replicates AN - Available N, the first
 axis of a PCA of NH4+ (mg kg-1) and NO3- (mg kg-1) pH - Soil pH Al3+
 -Aluminium ion content in soil (mg kg-1) base_pca- The first axis of a PCA
 of soil base cations (Ca2+ (mg kg-1), K+ (mg kg-1) , Mg2+ (mg kg-1) )
 MB_pca- The first axis of a PCA of microbial carbon (mg kg-1) and nitrogen
 (mg kg-1) SR Species Richness lgplant/MB - log-transformed of
 plant-microbial competition
DOI: 10.15468/dl.dvzuav
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiropotes utahicki"
 ]
}

 The dataset includes 43 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003825-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mh6wwy
title: Occurrence Download

description: A dataset containing 2222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calluna vulgaris"
 ]
}

 The dataset includes 2222 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003824-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.