cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.185q88f
title: Data from: Escalating human-wildlife conflict in Wolong Nature Reserve, China: a dynamic and paradoxical process

description: Human-wildlife conflict (HWC) has become a conservation focus for both
 protected area management and local communities in many parts of the
 world. The incidence and mediation of HWCs is rooted in coupled
 environmental and socio-economic contexts. A systematic analysis of HWCs
 was undertaken in 2016 in the Wolong Nature Reserve located in Sichuan
 Province, southwestern China. Semi-structured interviews were conducted
 with 201 local households to understand the occurrence of wildlife damage,
 the wildlife species involved, the typical losses incurred, and the
 mitigation measures employed. Results revealed that local HWC has
 increased rapidly in recent years due to effective biodiversity
 conservation and ecological restoration policies. Despite the widespread
 occurrence of HWCs, nearly all respondents stating that they had suffered
 a financial loss, appropriate compensation schemes are lacking. Local
 respondents’ expected compensation amount and style were investigated and
 it was concluded that integrated compensation and community development
 plans are needed to mediate and resolve HWC. In particular, greater
 attention should be given to reducing local households’ dependence on
 agriculture and transforming local livelihood strategies to alternative
 economic activities not related to farming.
description: Data from: Escalating
 human-wildlife conflict in Wolong Nature Reserve, China: A dynamic and
 paradoxical processThe data is from
 questionnaire survey.Data.xlsx
DOI: 10.5061/dryad.t533f64
title: Data from: Loss of cultural song diversity and the convergence of songs in a declining Hawaiian forest bird community

description: The effects of population decline on culturally transmitted behaviors in
 animals has rarely been described, but may have major implications to
 population viability. Learned vocal signals in birds are of critical
 importance to behaviors associated with reproduction, intrasexual
 interactions, and group cohesion, and the complexity of vocal signals such
 as song can serve as an honest signal of an individual’s quality as well
 as the viability of a population. In this study, we examined how rapid
 population declines recently experienced by Hawaiian honeycreepers on the
 island of Kaua‘i (USA) may have influenced the diversity, complexity, and
 similarity of learned honeycreeper songs. We analyzed the acoustic
 characteristics of songs recorded during 3 time periods over a 40-year
 time frame for three species of declining Kaua‘i honeycreepers. We
 detected a loss of song complexity and diversity over the 40-year time
 period that paralleled dramatic population declines. Concurrent with the
 loss of complexity we also found that the acoustic characteristics of the
 three honeycreepers’ songs became more similar to another. To our
 knowledge, this is the first documentation of convergence of acoustic
 characteristics among rapidly declining species. The reduction of song
 complexity and diversity and convergence of songs not only signals a loss
 of culturally transmitted behaviors in these endemic Hawaiian
 honeycreepers, but also potential challenges to recovery of these rapidly
 declining species. Moreover, the present study highlights that there is a
 “hidden” cost to declining populations beyond just the loss of individuals
 that is not often considered, the loss of culturally transmitted social
 behaviors.
description: Acoustic Characteristics
 of Three Kauai HoneycreepersData frame that contains
 11 acoustic characteristics measured from songs of ‘akeke‘e (AKEK) (Loxops
 cauruleirostris), ‘anianiau (ANIA) (Hemignathus parvus), and Kaua‘i
 ‘amakihi (KAAH) (Chlorodrepanis stejnegeri). The characteristics include:
 1) song length (total length of song from beginning to end, in seconds),
 2) total number of syllables, 3) number of unique syllable types, 4) trill
 rate (total syllables/song length), 5) average number of notes per
 syllable, 6) average number of frequency changes (directional change,
 either ascending or descending) within a syllable, 7) number of frequency
 changes between syllables within the song, 8) peak frequency (dominant
 frequency, level at which the most energy is expelled within the song, in
 Hz), and 9) low (kHz) and 10) high (kHz) frequencies at which the
 amplitude exceeded -24dB relative to the peak frequency, and 11) frequency
 bandwidth (kHz) as the difference between high and low frequency. Songs
 were collected 1976-1978 (1970s), 2001-2004 (early 2000s), 2010-2017
 (present day). Record ID corresponds to the identification number given to
 each sound file archived at The Macaulay Library at the Cornell Lab of
 Ornithology.Dyrad_dataset.xlsx
DOI: 10.5061/dryad.g40g7k0
title: Data from: Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral

description: Rhythms of various periodicities drive cyclical processes in organisms
 ranging from single cells to the largest mammals on earth, and on scales
 from cellular physiology to global migrations. Molecular mechanisms that
 generate circadian behaviours in model organisms are well studied, but
 longer phase cycles and interactions between cycles with different
 periodicities are not well understood. Broadcast spawning corals are one
 of the best examples of an organism integrating inputs from multiple
 environmental parameters including seasonal temperature, the lunar phase,
 and hour of the day, to calibrate their annual reproductive event. We
 present a deep RNA-seq experiment utilizing multiple analyses to
 differentiate transcriptomic responses modulated by the interactions
 between the three aforementioned environmental parameters. Acropora
 millepora was sampled over multiple 24-hour periods throughout a full
 lunar month and at two seasonal temperatures. Temperature, lunar and
 diurnal cycles produce distinct transcriptomic responses, with
 interactions between all three variables identifying a core set of genes.
 These core genes include mef2, a developmental master regulator, and two
 hnRNPs, one of which is known to post-transcriptionally interact with mef2
 and with biological clock regulating mRNAs. Interactions between diurnal
 and temperature differences impacted a range of core processes ranging
 from biological clocks to stress responses. Genes involved with
 developmental processes and transcriptional regulation were impacted by
 the lunar phase and seasonal temperature differences. Lastly, there was a
 diurnal and lunar phase interaction where genes involved with
 RNA-processing and translational regulation were differentially regulated.
 These data illustrate the extraordinary levels of transcriptional
 variation across time in a simple radial cnidarian in response to the
 environment under normal conditions.
description: amil_v102The reference transcriptome used in the analysis. This was obtained from the laboratory of Misha Matz, UT Austin. This file is identical, except some fasta headers have had gene symbols updated. For the paper, isogroup numbers are the core identifier and isogroup to gene symbol mappings from the supplemental data should be used, not gene symbols from the fasta headersWuitchik2019_supplementary_data_april23All supplemental data including statistical analysesnormalized_countsThe normalized count table for all experiments. Details on the column headers are available in a separate file, experimental design.txtexpDesignA key to column headers in the normalized count table.
DOI: 10.5061/dryad.g7n0k6n
title: Data from: Divergent host plant utilization by adult and offspring is related to intra-plant variation in chemical defences

description: 1. Adult and juvenile herbivores of the same species can use divergent
 feeding strategies, and thus may inhabit and consume different parts of
 the plant. Because the expression of chemical defences often differ
 between host plant tissues, this variation may result in disparate
 performance outcomes for adult and juvenile conspecifics that feed on
 distinct dietary substrates. 2. The goal of this study was to evaluate how
 host range may differ between adults and juveniles in a generalist
 herbivore. We addressed the impacts of among- and within-plant defence
 variation using the wood-feeding Asian longhorned beetle (Anoplophora
 glabripennis) and three host plants having a range of putative resistance.
 3. Impacts of host plants on adult and offspring performance were assessed
 using a series of controlled bioassays. We evaluated adult feeding and egg
 laying behaviors in choice and no-choice experiments using the different
 hosts, and subsequent offspring establishment. We then evaluated host
 plant chemical composition related to nutrition and defence. 4. Different
 plants had strong impacts on adult performance, but these patterns did not
 extend to effects on offspring. Females were capable of developing eggs
 when provided Acer rubrum, but not Populus deltoides or Populus tomentosa.
 Females that produced eggs by feeding on A. rubrum, however, deposited
 eggs into all three plant species. Larvae hatched and consumed tissues in
 all three hosts. The differences between adult and juvenile utilization of
 Populus spp. were reflected in markedly higher salicinoid phenolic
 concentrations in bark (&gt; 2% dw), while wood had trace quantities.
 5. Our results demonstrate that plant resistance mechanisms can
 differentially act upon adult and juvenile life stages of a polyphagous
 herbivore when there is differential expression of chemical defences among
 plant tissue types. Anoplophora glabripennis has been a globally
 successful invader due in part to its broad host range, and our results
 suggest a mechanism that permits the beetle to exploit marginally
 resistant plants. This study has implications for how host range differs
 between insect feeding stages, which is particularly important for
 invasive, polyphagous species encountering novel food sources.
description: Full data set for all
 figures and analysesSpreadsheets containing
 the following: plant metabolites, insect choice and no-choice behavioral
 data, larval growth, oxidative stress.alb_fulldata.xlsx
DOI: 10.5061/dryad.52773vj
title: Data from: Coupling landscapes and river flows to restore highly modified rivers

description: Modifications to landscapes and flow regimes of rivers have altered the
 function, biodiversity, and productivity of freshwater ecosystems
 globally. Reestablishing geomorphological and hydrological conditions
 necessary to sustain ecosystems is a central challenge for restoration
 within highly altered systems. Meeting this challenge requires
 simultaneously addressing multiple and interacting stressors within the
 context of irreversible changes and socio‐economic constraints.
 Traditionally, river restoration approaches either physically change the
 landscape or channel (channel‐floodplain manipulation) or adjust hydrology
 (environmental flows), and such actions are often independent. We
 juxtapose these two subfields of river restoration, which have undergone
 parallel transformations, from goals of reproducing static representations
 of form and flow regime to goals of reestablishing processes. The parallel
 transformations have generated shared ideas, which point to benefits of
 coupling channel‐floodplain manipulation and environmental flow actions to
 achieve process‐based goals. Such coupling supports comprehensive river
 restoration efforts aimed at supporting resilient ecosystems within human
 dominated landscapes in a nonstationary climate. We identify four elements
 of coupled approaches for restoring highly modified rivers: (1) identify
 physical and ecological process potential given interactive effects of
 altered landscapes and flows; (2) consider capacity for sustaining
 identified processes under potential future change; (3) model alternatives
 for coupled restoration actions to support identified processes; and (4)
 evaluate alternatives using metrics representing integrative effects of
 coupled actions. We suggest these emergent elements contribute to the
 development of standard practices for restoring highly modified rivers and
 encourage an increasing number and quality of coupled applications.
description: Citation data table for
 river restoration literatureWhipple_Viers_WRR_RRlit_wos.csv
DOI: 10.5061/dryad.14g7bk7
title: Data from: Pressure-Induced Order-Disorder Transition in Gd1.5Ce0.5Ti2O7 Pyrochlore

description: An experimental study on ordered pyrochlore structured Gd1.5Ce0.5Ti2O7
 (Fd-3m) was carried out up to 45 GPa by synchrotron radiation X-ray
 diffraction and Raman spectroscopy. Experimental results show that
 Gd1.5Ce0.5Ti2O7 transfers to a disordered cotunnite-like phase (Pnma Z=4)
 at ~42 GPa. Compared with the end member Gd2Ti2O7, the substitution of
 Ce3+ for Gd3+ increases the transition pressure and the high-pressure
 stability of the pyrochlore phase. This pressure-induced structure
 transition is mainly controlled by cationic order-disorder modification,
 and the cationic radius ratio rA/rB may also be effective for predicting
 the pyrochlore oxides’ high-pressure stability. In addition, two
 isostructural transitions of Gd1.5Ce0.5Ti2O7 are observed at 6.5 GPa and
 13 GPa, and their unit-cell volumes as a function of pressure demonstrate
 that the compression behavior is rather complex.
description: Run1The unit-cell parameters
 and volumes under different pressures in run1.RUN1.txtRun2The unit-cell parameters and volumes under different pressures obtained from run2.RUN2.txtXRDPatternfromRun1in-situ high pressure XRD pattern of run1PatternRun1.zipXRDPatternRun2in-situ high pressure XRD pattern of run2Ramanin-situ high pressure Raman spectra of different pressuresDatarecordPressures of the XRD patterns
DOI: 10.5061/dryad.1cr4qd3
title: Data from: Complex economic behavior patterns are constructed from finite, genetically controlled modules of behavior

description: Complex ethological behaviors could be constructed from finite modules
 that are reproducible functional units of behavior. Here, we test this
 idea for foraging and develop methods to dissect rich behavior patterns in
 mice. We uncover discrete modules of foraging behavior reproducible across
 different strains and ages, as well as nonmodular behavioral sequences.
 Modules differ in terms of form, expression frequency, and expression
 timing and are expressed in a probabilistically determined order. Modules
 shape economic patterns of feeding, exposure, activity, and perseveration
 responses. The modular architecture of foraging changes developmentally,
 and different developmental, genetic, and parental effects are found to
 shape the expression of specific modules. Dissecting modules from complex
 patterns is powerful for phenotype analysis. We discover that both
 parental alleles of the imprinted Prader-Willi syndrome gene Magel2 are
 functional in mice but regulate different modules. Our study found that
 complex economic patterns are built from finite, genetically controlled
 modules.
description: Foraging Feature and
 Module Expression data - Dataset 1This file contains the
 foraging feature and module expression data for each C57BL6/J, F1cb, F1bc
 and Cast mouse tested in our study.featurePLUSmoduleDataForEachMouse_B6F1cbF1bcCast.txtForaging Feature and Module Expression data - Dataset 2Foraging feature and module expression data for the Magel2 mouse lines analyzed in the study.featurePLUSmoduleDataForEachMouse_Magel2.txtForaging Assay Protocola detailed description of how to build the foraging arenas and perform the assay as described in our paperProtocol.zip
DOI: 10.60555/dnga-vp70
title: The origin of fragility in high-temperature oxide liquids - towards fabrication of novel non-equilibrium oxides
title: ELF-6 PRONTO

description: This project investigated the high-temperature thermophysical properties of molten metal oxides, with a particular focus on molten titanates. These property measurements were used to establish correlations with atomic structure and glass formation.

The research exploits the unique capabilities in microgravity to measure the thermophysical properties – density, thermal expansion coefficient, viscosity and surface tension – over a wide temperature range. Samples, including glasses, were recovered after melt processing in microgravity for ground-based analysis and comparison with materials made on Earth. The work underpins development of a materials property-structure data set that can help in development of new materials and in meeting requirements of material utilization, processing in space, and exploration.
DOI: 10.5061/dryad.7n404q0
title: Data from: Seasonality in spatial distribution: climate and land use have contrasting effects on the species richness of breeding and wintering birds

description: Aim: Many studies have examined large-scale distributions of various taxa
 and their drivers, emphasizing the importance of climate, topography, and
 land-use. Most studies have dealt with distributions over a single season
 or annually without considering seasonality. However, animal distributions
 and their drivers can differ among seasons because many animals migrate to
 suitable climates and areas with abundant prey resources. We aim to
 clarify seasonality in bird distributions and their drivers. Location:
 Japan. Methods: We examined the effects of climate (annual mean
 temperature, snow depth), topography (elevation), and land use (extent of
 surrounding habitat) on bird species richness, in the breeding and
 wintering seasons separately, using nationwide data (254 forest and 43
 grassland sites, respectively). We separately analyzed the species
 richness of all species, residents, short-, and long-distance migrants in
 forests and grasslands. Results: In the breeding season, the annual mean
 temperature negatively affected all groups (except for forest and
 grassland residents), and the extent of surrounding habitat positively
 affected many groups. By contrast, in the wintering season, temperature
 positively affected all groups (except for forest residents), and the
 extent of surrounding habitat positively affected only grassland
 long-distance migrants. In both seasons, the species richness of forest
 and grassland residents was high in regions of moderate and high
 temperature, respectively. Moreover, snow depth negatively affected all
 forest groups in the wintering season. Mapping expected species richness
 suggested that regions with different climates served as habitats for
 different groups during different seasons. Main conclusions: All regions
 were important bird habitats depending on the season, reflecting the
 contrasting effects of temperature across seasons. In the breeding season,
 surrounding land-use was also an important driver. To understand the
 seasonal role that each region and environment plays in maintaining
 species/communities, a large-scale study considering both environmental
 seasonality and species distribution is needed.
description: Data of survey site
 distribution, bird species richness, and environmentGIS data of survey site
 (forest and grassland sites) distribution, and data of bird species
 richness (all species, residents, short-distance migrants, and
 long-distance migrants in both forests and grasslands) and environment
 (annual mean temperature, snow depth, elevation, and extent of surrounding
 habitat) at each site in each seasondata.zip
DOI: 10.5061/dryad.f3p8j8g
title: Data from: Mechanisms that influence sex ratio variation in the invasive hymenopteran Sirex noctilio in South Africa

description: Sirex noctilio is an economically important invasive pest of commercial
 pine forestry in the Southern Hemisphere. Newly established invasive
 populations of this woodwasp are characterised by highly male-biased sex
 ratios that subsequently revert to those seen in the native range. This
 trend was not observed in the population of S. noctilio from the summer
 rainfall regions in South Africa, which remained highly male-biased for
 almost a decade. The aim of this study was to determine the cause of this
 persistent male-bias. As explanation for this pattern we test hypotheses
 related to mating success, female investment in male versus female
 offspring and genetic diversity affecting diploid male production due to
 complementary sex determination. We found that 61% of females in a newly
 established S. noctilio population were mated. Microsatellite data
 analysis showed that populations of S. noctilio from the summer rainfall
 regions in South Africa are far less genetically diverse than those from
 the winter rainfall region, with mean Nei’s unbiased gene diversity
 indexes of 0.056 and 0.273, respectively. These data also identified
 diploid males at low frequencies in both the winter (5%) and summer (2%)
 rainfall regions. The results suggest the presence of a complementary sex
 determination mechanism in S. noctilio, but imply that reduced genetic
 diversity is not the main driver of the male-bias observed in the summer
 rainfall region. Among all the factors considered, selective investment in
 sons appears to have the most significant influence on male-bias in S.
 noctilio populations. Why this investment remains different in frontier or
 early invasive populations is not clear but could be influenced by females
 laying unfertilized eggs to avoid diploid male production in populations
 with a high genetic relatedness.
description: Allele
 size_microsatellite_S.noctilioAllele size of
 microsatellite markers in males of S. noctilio from the Western Cape and
 KwaZulu-Natal provincesQueffelecJetal_data_microsatellite.xlsxQueffelecJetal_SpaceStateModel_fig1_RscriptR script for the model predicting sex ratios of Sirex noctilio in South Africa
DOI: 10.5061/dryad.9232648
title: Data from: Viral infection causes sex-specific changes in fruit fly social aggregation behaviour

description: Host behavioural changes following infection are common and could be
 important determinants of host behavioural competence to transmit
 pathogens. Identifying potential sources of variation in sickness
 behaviours is therefore central to our understanding of disease
 transmission. Here, we test how group social aggregation and individual
 locomotor activity vary between different genotypes of male and female
 fruit flies (Drosophila melanogaster) following septic infection with
 Drosophila C Virus. We find genetic-based variation in both locomotor
 activity and social aggregation but we did not detect an effect of DCV
 infection on fly activity or sleep patterns within the initial days
 following infection. However, DCV infection caused sex-specific effects on
 social aggregation, as male flies in most genetic backgrounds increased
 the distance to their nearest neighbour when infected. We discuss possible
 causes for these differences in the context of individual variation in
 immunity and their potential consequences for disease transmission.
description: DAM_totalAll recorded activity counts for flies measured using the Drosophila Activity Monitor (DAM).Social Aggregation measurementsSocial aggregation measures, and treatment group IDs of groups of flies. Nearest neighbour distance was measured in millimetres and body lengths.Social Aggregation Body LengthsMeasures of randomly selected flies from an experiment testing the effect of genetic and sex-specific variation on social aggregation before and after infection with DCV.SA Body Lengths.csvDAM Summary StatisticsSummary statistics taken from 'DAM_total' datasheet summarising this activity data using three values: (1) Total activity, (2) the Proportion of time spent awake and (3) the average activity when awake.Dmel Activity and AggregationR script detailing the R code necessary to analyse and make plots of the data from two experiments on Drosophila activity and social aggregation.