cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28445087.v1
title: It’s a good thing that severely hypoxic salmon (Salmo salar) havea limited capacity to increase heart rate when warmed

description: With climate change, fish are facing rising temperatures, an increasein the frequency and severity of heat waves and hypoxia, sometimesconcurrently. However, only limited studies have examined thecombined effects of increases in temperature and hypoxia onfish physiology and survival. We measured the cardiorespiratoryphysiology of 12°C-acclimated Atlantic salmon when exposedacutely to normoxia [100% air saturation (sat.)] versus 75 and 50%air sat., and then warmed to their critical thermal maximum (CT max ) at2°C h−1 . Fish exposed to 50% air sat. became bradycardic, wereunable to increase heart rate ( fH ) when warmed, and had lowervalues for metabolic scope and CTmax (21.3 vs 26.1°C in normoxicfish). The effects of 75% air sat. on cardiorespiratory parameters andCTmax were intermediate. We then used atropine (1.2 mg kg−1) and 8-cyclopentyltheophylline (CPT; 50 nmol kg−1) to investigate whatrole(s) cholinergic tone on the heart and cardiac adenosinergiceffects, respectively, play in preventing severely hypoxic salmon(40% air sat.) from increasing fH when warmed. CPT had no/limitedeffects on salmon cardiorespiratory parameters and thermaltolerance. However, atropine increased fH in hypoxic fish andallowed it to rise with temperature, and this resulted in salmonthat were much less tolerant to warming. Collectively, these results:(1) show that fish in severely hypoxic environments will bevery susceptible to climate change-associated heat waves; and(2) suggest that cholinergic tone on the heart is not removed whenseverely hypoxic fish are exposed to rising temperatures to protectthe heart’s pumping capacity.
DOI: 10.6084/m9.figshare.6188720.v1
title: Public-private partnerships: A multi-disciplinary meta-review of the research

description: The spreadsheets provide 1) details of 1,354 papers on Public-Private Partnerships (PPPs) from 605 journals extracted from the Scopus database; 2) an initial ranking of 547 journals by 11 citation-based metrics such as a journal impact factor; and 3) a final ranking of 91 journals publishing 732 papers on PPPs.
DOI: 10.3535/1yf-3f2-nn2
title: Conularia sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vll-yc1-te5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12091902.v1
title: Enrichment of CpG island shore region hypermethylation in epigenetic breast field cancerization

description: While changes in DNA methylation are known to occur early in breast carcinogenesis and the landscape of breast tumour DNA methylation is profoundly altered compared with normal tissue, there have been limited efforts to identify DNA methylation field cancerization effects in histologically normal breast tissue adjacent to tumour. Matched tumour, histologically normal tissue of the ipsilateral breast (ipsilateral-normal), and histologically normal tissue of the contralateral breast (contralateral-normal) were obtained from nine women undergoing bilateral mastectomy. Laser capture microdissection was used to select epithelial cells from normal tissue, and neoplastic cells from tumour for genome-scale measures of DNA methylation with the Illumina HumanMethylationEPIC array. We identified substantially more CpG loci that were differentially methylated between contralateral-normal and tumour (63,271 CpG loci <i>q</i> q p DCIS: ductal carcinoma <i>in situ</i>; GO: gene ontology; OR: odds ratio; CI: confidence interval; TFBS: transcription factor binding site; LOLA: Locus Overlap Analysis
DOI: 10.3535/4m0-l1l-7q9
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b5s-hzr-5da
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z50-6c1-3yh
title: Tabulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zde-8hv-dm1
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21526356.v4
title: input_fig1_C_D_S3A_Hsp110_SUN1

description: This dataset contains data used to generate panels 1C and S3A for Hsp110 and SUN1 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.3535/dl7-rn6-9tx
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y24-m1n-9n0
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20645469.v2
title: POMS | POMS results

description: Output tables based on examples of applying POMS to real datasets in the POMS manuscript. <br> Result tables are split by Almeida_2019 (the case-control meta-analysis data) and Tara_Oceans. There is a separate output table per data type (e.g., KO vs KEGG pathway), as well as for each dataset (for Almeida 2019) and environmental factor (for Tara Oceans).
DOI: 10.3535/zz1-yjf-z1m
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l7w-vrj-ndz
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sr5-h7v-tcj
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25322813.v1
title: Additional file 1 of Comparison of disease and economic burden between MRSA infection and MRSA colonization in a university hospital: a retrospective data integration study

description: Supplementary Material 1
DOI: 10.3535/450-l4v-nvx
title: †Dolerorthis Schuchert & Cooper, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tr0-zv8-b0m
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1517808.v1
title: Rising food prices in Saudi Arabia

description: ABSTRACT Food prices play a major role in setting inflation rates, and in recent years’ global climatic conditions has worsened a lot while global demand is increasing due to the growth of the middle class in countries such as China and India. Rising food prices remains a key concern for the government of Saudi Arabia. Saudi Arabia remains vulnerable to increases in food prices due to its high dependence on imports. The Saudi economy is an open-market based economy which is reflected by data of foreign trade with trading partners of the Kingdom. High degree of economic openness of a country causes the domestic inflation rate to be affected by change in the prices of goods in the country of origin. Saudi government is facing the challenge of limiting inflation amid a spike in global food prices. Another major challenge to the effectiveness of the Saudi monetary policy is the lack of autonomy due to the pegged exchange rate system with the US dollar. This paper attempts to study the market dynamics of the kingdom of Saudi Arabia, drivers responsible for inflation and measures that has been taken by the government to deal with the situation.
DOI: 10.17632/49kg95dfb5
title: Data for: Life cycle assessment of the carbon intensity of deep geothermal heat systems: a case study from Scotland

description: Calculation used to make the assessment of life cycle assessment for CO2 emissions from deep low-enthalpy geothermal heat.
DOI: 10.3535/m6y-1b0-lf5
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n6j-tya-5p0
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14321905.v1
title: Influence of aggregate degradation on the permeability of railway ballast

description: ABSTRACT The main function of the railway structure is to provide stability and security so that rail transport operates efficiently. Its main constituents on the subgrade are ballast, sub-ballast, sleepers and rails. The ballast is an element of the superstructure that is located between the sleepers and the sub-ballast. The main functions of the ballast are the stress distribution and the contribution to the drainage of the structure. However, the impact caused by the passage of the trains cause the degradation of the aggregate and produces fines that damages to the drainage of the structure. Ineffective drainage can lead to the appearance of defects in the superstructure such as the displacement of the sleepers and the unevenness of the railroad due to the occurrence of permanent deformations in the geotechnical layers. In this context, the objective of this work was to evaluate the degradation of the ballast and the way in which this phenomenon influences its draining capacity. For this, in a first step, characterization tests of the material were carried out. The experimental method consisted of the accelerated degradation of basalt samples in the abrasion Los Angeles drum. Then, the permeability evaluation of the material was performed. It was possible to verify the relation between the phenomena of fouling and permeability from the clean ballast to the highly fouled ballast. It was evidenced that the 19.1 mm aggregate fraction suffered greater degradation, contributing to the fines increase in the system, being responsible for the fouling phenomenon, representing a harmful element in relation to the drainage of the rail ballast.
DOI: 10.6084/m9.figshare.25440484.v2
title: AxSpA Dataset

description: Correlations between biometrics in AxSpA
DOI: 10.6084/m9.figshare.28137113.v1
title: Exchange Rate and Living Condition Data - Update.xlsx

description: Contains both the primary and secondary data used for the research
DOI: 10.3535/re1-fxh-c3e
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y2v-lwl-7gy
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19918681.v1
title: Banco de Dados: Formulário de Codificação (FdC) + Livro de Códigos (LdC)

description: Compilação de dados sobre a representatividade de pessoas por cor/raça em peças de publicidade do Ministério da Educação e das maiores universidades brasileiras de cada região para divulgação de oportunidades de ingresso em cursos de graduação (processos seletivos) de 2012 a 2022.
DOI: 10.6084/m9.figshare.28513778.v1
title: vet-lirn-amr-database-2017-2022.xlsx.zip

description: Dataset from Vet-LIRN
DOI: 10.6084/m9.figshare.5631835.v2
title: Soil properties, Meteorological, hydrological and geochemical (K+) data from the Stara Rzeka catchment (Carpathians, Poland)

description: The hydrometeorological observations 1994-2016 from Lazy Station (Poland):- monthly sums of precipitation [mm],- the monthly means of air temperature [C]- the monthly means of speciffic runoff of Stara Rzeka stream [L s-1 km-2]- the concentration of potassium in stream water during events [mg/L]- specific runoff from four streams [L s-1 km-2] (agricultural - K, forested - LP, agricultural - DP, mixed land use - SR)- ground temperature at 5, 10, 20, 50, 100 cm depth [C]- hourly precipitation during events [mm]- hourly air temperature during events [C]- soil texture, ph and exchangable K+ content
DOI: 10.3535/4a2-yzp-w5s
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n30-bn8-j8n
title: Syringophyllum organum (L.)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28319048.v1
title: Kaplan et al. 2025: humpback whale observation, krill length, caloric, and net tow data

description: Data produced by Kaplan et al. 2025 ICES Journal of Marine Science: "Krill swarm biomass, energetic density, and species composition drive humpback whale distribution in the Northern California Current"AbstractPrey abundance and quality are dynamic in time and space, impacting predator ecology. We examine variation in species-specific krill quantity and quality as prey for humpback whales in the Northern California Current region, using generalized additive models to assess metrics including biomass and energy density derived from an integrated dataset of concurrent active acoustics, net tows, and marine mammal observations (2018–2022). Overall, prey metrics were positively correlated with humpback whale presence, with increasing trends modified by seasonal (early versus late foraging season) and spatial (continental shelf versus offshore) variation (model deviance explained 36.3%–40.8%). Biomass and energy density had strong positive effects on humpback whale presence, suggesting whales target high-quality swarms that offer more energy per lunge. Elevated <i>Thysanoessa spinifera</i> abundance near humpback whales suggests that they target this species, particularly in the late season when they are energetically richer than <i>Euphausia pacifica</i>, the region’s other abundant krill species. Environmental change may decrease krill abundance and quality, impacting humpback whales’ ability to meet energetic requirements and potentially driving changes in their distributions and exposure to anthropogenic threats. Clarifying drivers of humpback whale krill patch selection can improve species distribution models and aid managers in mitigating risk to whales.
DOI: 10.3535/wt2-zt8-mme
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zjx-7rd-j88
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9905243.v6
title: CNUC - Cadastro Nacional de Unidades de Conservação - Versão DATASET POSTGRESQL

description: CNUC - Cadastro Nacional de Unidades de Conservação<br>Endereço de download da fonte primária (shapefiles)<br><br>http://mapas.mma.gov.br/i3geo/datadownload.htm acessado em 25/09/2019<br><br>
DOI: 10.3535/086-wga-f96
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dsl-15v-951
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1623111.v1
title: Influence of MRI-based bone outline definition errors on external radiotherapy dose calculation accuracy in heterogeneous pseudo-CT images of prostate cancer patients

description: <b>Background.</b> This work evaluates influences of susceptibility-induced bone outline shift and perturbations, and bone segmentation errors on external radiotherapy dose calculation accuracy in magnetic resonance imaging (MRI)-based pseudo-computed tomography (CT) images of the male pelvis.<b>Material and methods.</b> T<sub>1</sub>/T<sub>2</sub>*-weighted fast gradient echo, T<sub>1</sub>-weighted spin echo and T<sub>2</sub>-weighted fast spin echo images were used in bone detection investigation. Bone edge location and bone diameter in MRI were evaluated by comparing those in the images with actual physical measurements of fresh deer bones positioned in a gelatine phantom. Dose calculation accuracy in pseudo-CT images was investigated for 15 prostate cancer patients. Bone outlines in T<sub>1</sub>/T<sub>2</sub>*-weighted images were contoured and additional segmentation errors were simulated by expanding and contracting the bone contours with 1 mm spacing. Heterogeneous pseudo-CT images were constructed by adopting a technique transforming the MRI intensity values into Hounsfield units with separate conversion models within and outside of bone segment.<b>Results.</b> Bone edges and diameter in the phantom were illustrated correctly within a 1 mm-pixel size in MRI. Each 1 mm-sized systematic error in bone segment resulted in roughly 0.4% change to the prostate dose level in the pseudo-CT images. The prostate average (range) dose levels in pseudo-CT images with additional systematic bone segmentation errors of −2 mm, 0 mm and 2 mm were 0.5% (−0.5–1.4%), −0.2% (−1.0–0.7%), and −0.9% (−1.8–0.0%) compared to those in CT images, respectively, in volumetric modulated arc therapy treatment plans calculated by Monte Carlo algorithm.<b>Conclusions.</b> Susceptibility-induced bone outline shift and perturbations do not result in substantial uncertainty for MRI-based dose calculation. Dose consistency of 2% can be achieved reliably for the prostate if heterogeneous pseudo-CT images are constructed with ≤± 2 mm systematic error in bone segment.
DOI: 10.3535/7nl-wdv-amh
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s3t-njc-g88
title: †Ptilodictya lanceolata (Goldfuss, 1826)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xzx-q1t-fgk
title: †Dolerorthis Schuchert & Cooper, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13491084.v1
title: ISST validation dataset

description: Dataset for the Hungarian validation of Internet Sex Screening Test (Delmonico, 1997, Delmonico & Miller, 2003)
DOI: 10.3535/dcg-mbq-jxs
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fpb-4yr-y6c
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12324491.v1
title: Figure 5. C

description: Quantification of fibrosis area and blood vessel density in rat hearts.
DOI: 10.6084/m9.figshare.26519530.v1
title: Phylogenetic and taxonomic reassessment of the genera <i>Echinoderma</i> and <i>Lepiota</i>

description: The taxonomic position of the section Echinatae, in its traditional sense, is analyzed based on morphological investigations and multilocus phylogeny (ITS, LSU, mtSSU, RPB2), including type sequences. The results confirm the phylogenetic justification of the genus Echinoderma; however, some species treated as Echinoderma form a monophyletic section within Lepiota. Several sections of Lepiota are validated and recombined as a result of a nomenclatural reassessment of the infrageneric system. Lectotypes and epitypes are designated for species lacking type specimens. Additionally, sequences of specimens identified as Echinoderma asperum form several clades, which are discussed in a taxonomic context.
DOI: 10.3535/a8k-dza-v45
title: Conularia latisulcata Eichwald

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16545739.v2
title: Interpretable machine learning for analysing heterogeneous drivers of geographic events in space-time

description: Machine learning (ML) interpretability has become increasingly crucial for identifying accurate and relevant structural relationships between spatial events and factors that explain them. Methodologically aspatial ML algorithms with an apparent high predictive power ignore non-stationary domain relationships in spatio-temporal data (e.g. dependence, heterogeneity), leading to incorrect interpretations and poor management decisions. This study addresses this critical methodological issue of ‘interpretability’ in ML-based modeling of structural relationships using the example of heterogeneous drivers of wildfires across the United States. Specifically, we present and evaluate a spatio-temporally interpretable random forest (iST-RF) that uses spatio-temporal sampling-based training and weighted prediction. Although the ultimate scientific objective is to derive interpretation in space-time, experiments show that iST-RF can improve predictive accuracy (76%) compared to the aspatial RF approach (70%) while enhancing interpretations of the trained model’s spatio-temporal relevance for its ensemble prediction. This novel approach can help balance prediction and interpretation with fidelity in a spatial data science life cycle. However, challenges exist for predictive modeling when the dataset is very small because in such cases locally optimized sub-model’s prediction performance can be suboptimal. With that caveat, our proposed approach is an ideal choice for identifying drivers of spatio-temporal events at country- or regional-scale studies.
DOI: 10.6084/m9.figshare.26043787.v1
title: Additional file 2 of Three-dimensional environment sensitizes pancreatic cancer cells to the anti-proliferative effect of budesonide by reprogramming energy metabolism

description: Supplementary Material 2
DOI: 10.17632/zt8n49bzxj
title: LINF_070005000

description: Ubiquitin activating E1 enzyme | ATG7; Leishmania infantum (strain JPCM5)
DOI: 10.3535/ewn-rha-4dr
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v1d-7ge-sk8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1381877.v4
title: Table S3 Parameter estimates for the ongoing EVD outbreak in West Africa

description: Parameter estimates for the ongoing EVD outbreak in West Africa 2014-2015
DOI: 10.6084/m9.figshare.c.3813955_d1.v1
title: Additional file 1: of Identification and profiling of growth-related microRNAs in Chinese perch (Siniperca chuatsi)

description: Target gene prediction and analysis of miRNAs. (XLS 1498Â kb)
DOI: 10.3535/m3f-ck3-zlv
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n3c-lee-cf3
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e2l-y6c-h4r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kw5-mkc-3j6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11538909.v1
title: Bromocriptine Mesylate Supplemental Table 1

description: Plasma glucagon concentrations during the OGTTs<br>
DOI: 10.6084/m9.figshare.4272356.v1
title: 45Deg EDM Bearing Experimental Test Data

description: Measured vibration of a defective bearing with an EDM defect on the outer raceway of the bearing. Entry and exit slope of 45 degrees and 9.7mm long with an appiled load of 2.5-10kN and a shaft speed of 5-12.5Hz.
DOI: 10.6084/m9.figshare.8076356.v1
title: Content Analysis - anexo 1

description: Data collection.