cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6f785/1
title: Stacyetal_HeredityMay2016_AllDataForDryad

description: Five data files for Stacy, Johansen, Sakishima & Price. 2016. Genetic analysis of an ephemeral intraspecific hybrid zone in the hypervariable tree, Metrosideros polymorpha, on Hawai’i Island. Heredity (accepted for publication May 2016).There are 5 files compiled in one Excel file and also saved in 5 individual CSV files.1) Adult morphology data for 86 trees in the hybrid zone studied.2) Phenotype data for 1,311 individual seedlings produced through controlled crosses involving 72 hybrid-zone adults.3) Midparent and midoffspring phenotypes for 124 crosses among 72 hybrid-zone trees.  Reciprocal crosses (e.g., tree 3 --&gt; tree 5 and tree 5 --&gt; tree 3) are shown separately.4) Genotype data for four classes of hybrid-zone trees (I, H1, H2, G) at 9 microsatellite loci.5) The same 9-microsatellite-locus data set supplemented with 7 and 4 additional I and G populations, respectively from across Hawaii Island.
DOI: 10.5061/dryad.6f785/2
title: Stacyetal_HeredityMay2016_HybridZoneAdultTreeMorphology
DOI: 10.5061/dryad.80q45/1
title: Yee et al. Oikos 2016 Experiment life history data

description: This file contains the life history data (mass (g), development time (d) for males and females and survival) from the experiment conducted for two photoperiods at two temperatures from 4 locations (2 counties for each of two states).
DOI: 10.5061/dryad.8487r/1
title: Population Densities of Protists in Microcosms under varying assembly history, dispersal, and predator treatments

description: Population densities of protists in microcosms (number of individuals/ml). Microcosms varied in assembly history, predator identity, and dispersal with each history/predator/dispersal treatment repeated three times. Predator and dispersal key included on spreadsheet. Assembly history key can be found in supplementary materials of article. Note that Chilomones were added to all microcosms at the beginning of the experiment as a food source for the predator, and thus, not part or the assembly history treatment.
DOI: 10.5061/dryad.966qt/1
title: Data on early-life disease exposure, mortality and reproductive success

description: The data supplied are sufficient to repeat all analyses in the paper. Individual identities, maternal identities, and birth years have been assigned random numbers to protect the identities of the individuals involved. Since these are fitted as random effects, this will not affect any analyses. Data on the calculation of the early-life disease exposure measure can be found in the Supporting Information of the paper itself.
DOI: 10.5061/dryad.cg17c/1
title: Metadata for 3 Level Mixed Effects Logistic Regression Models

description: Metadata containing demographic and rotavirus results for each sample
DOI: 10.5061/dryad.h1v2g/1
title: US Burned Buildings data package

description: It contains a copy of the main data files exactly as used for this paper, as well as other accompanying files. Contains all the digitized burned and survived buildings that were within fire perimeters that occurred between 2000 and 2010 in the conterminous U.S.
DOI: 10.5061/dryad.h8h35/1
title: amplitude_data

description: Raw data from  Fig.3 - figure supplement 1: Amplitude values recorded during "noise" (80dB) and "no noise" treatment, for different sounds (baseline background, focal bird and non-focal bird) .
DOI: 10.5061/dryad.h8h35/2
title: number_calls

description: Raw data from Fig. 1: bird (channel), day of experiment, number of calls, scorer ID and tarsus.
DOI: 10.5061/dryad.h8h35/3
title: video_duration

description: Raw data from Fig. 1: bird (channel), experimental day, video duration (video.dur)
DOI: 10.5061/dryad.h8h35/4
title: transmitter_events

description: Raw data from Fig. 2: Time stamp (sec) of vocal events, recorded by Transmitter 1 or 2, Recording (first or last 4 hours of 24-hr test run). Note that minimal lags between transmitters are due to cutting of sound files (&lt; 2ms).
DOI: 10.5061/dryad.h8h35/5
title: vocalevents_no_noise

description: Raw data for Fig. 3- figure supplement 3: Time stamps of vocal onsets, bird (female, male1, male2) during "no noise" condition
DOI: 10.5061/dryad.h8h35/6
title: vocalevents_noise

description: Raw data for Fig. 3- figure supplement 3: Time stamps of vocal onsets, bird (female, male1, male2) during "noise" condition
DOI: 10.5061/dryad.j9390/1
title: Shelby_et_al_Master_08.04.14p
DOI: 10.5061/dryad.j9390/2
title: Shelby_et_al_Mycorrhizae
DOI: 10.5061/dryad.m550m/7
title: Figure 2 - figure supplement 1

description: Characteristics of the 58 swIAVs collected in Mexico for this study.
DOI: 10.5061/dryad.m550m/8
title: Figure 6 - source data 1

description: Pairwise information on imports of live swine from specific countries is available from 1996-2012.  Data available from the United Nations' Commodity Trade Statistics Database, http://comtrade.un.org.
DOI: 10.5061/dryad.m550m/9
title: Figure 7- source data 1

description: Times to the most recent common ancestor (tMRCA) and posterior probabilities (&gt;0.01) used in figure 7
DOI: 10.5061/dryad.mk301/1
title: genetic_data

description: File with individual ID, population, geographical coordinates, microsatellite genotypes at 16 loci
DOI: 10.5061/dryad.mq328/1
title: communityRKdata_TODryad

description: Data for different clones of Serratia marcescens evolving in different multi species communities, or alone, under high or low resource concentration. Measurements for growth rate and yield were done in two resource concentrations. Columns in the data: Population: identity of population/microcosm where clones have evolved
Clone: id number of isolated clone within population
NB: measurement concentration where 25 % stands for low nutrient broth concentration and 100% for high.
Ctreat: community treatment 1 stands for evolution alone, and 2 evolving in community.
Rtreat: Resource evolution treatment 25 % stands for low nutrient broth concentration and 100% for high.
Rmax: maximum growth rate OD h-1
K: maximum attained biomass (OD)
Inoculum: how much biomass of bacteria were pipetted in the wells prior to measurement.
Ncaps: presence absence information of Novosophingobium capsulatum
Pchloro: presence absence information of Pseudomonas chlororaphis
Pputida: presence absence information of Pseudomonas putida
Ecoli: presence absence information of E. Coli
Eaerog: presence absence information of Enterobacter aerogenes
Ladecar: presence absence information of Leclercia adecarboxylata
DummyNcaps: presence absence information of Novosophingobium capsulatum
DummyPchloro: presence absence information of Pseudomonas chlororaphis
DummyPputida: presence absence information of Pseudomonas putida
DummyEcoli: presence absence information of E. Coli
DummyEaerog: presence absence information of Enterobacter aerogenes
DummyLadeca: presence absence information of Leclercia adecarboxylat
DOI: 10.5061/dryad.n7dv6/1
title: Morphological data

description: Metamers (i.e., internode,  petiole  and  corresponding leaf lamina) traits of 397 individuals from 20 populations.
DOI: 10.5061/dryad.n7dv6/2
title: Annona crassiflora-microsatellites-

description: Data of eight  microsatellite  loci  previously developed for A. crassiflora used to genotype individuals in 21 populations.
DOI: 10.5061/dryad.p23f0/1
title: Table 1. Details of the 72 data packages (and their associated articles) included in the survey.
DOI: 10.5061/dryad.p23f0/2
title: Table 2. The number of data packages archived in the Dryad Digital Repository each year from 2000 to 2015 for four leading journals within ecology and evolutionary biology (The American Naturalist, Proceedings of the Royal Society B: Biological Sciences, Evolution, and Journal of Evolutionary Biology).
DOI: 10.5061/dryad.pq35t/1
title: Thermal Hatch Data File

description: File contains data for the 1200 larvae measured at hatch. Data includes individual ID codes, thermal incubation treatment the individual incubated in from egg to hatch, family code (each code represents a cross between 1 female and 1 male; families were half-sibling groups with one female crossed with two males therefore the half-sib groups include A and B, C and D, E and F, G and H, and I and J), and measurements for the three phenotypic traits quantified at hatch: body length (mm), body area (mm), and yolk-sac area (mm^2). Note: Thermal incubation treatments were coded as A=Warm, B=Variable, C=Ambient, and D=Cold prior to analysis of the data.
DOI: 10.5061/dryad.pq35t/2
title: Thermal Emergence Data File

description: File contains data for the 303 larvae measured at the time of emergence and corresponds to the same individual ID numbers, incubation treatments, and family codes as the hatch data file. Data includes individual ID codes, thermal incubation treatment the individual incubated in from egg to hatch, family code (each code represents a cross between 1 female and 1 male; families were unrelated), measurements for the three phenotypic traits quantified at the time of emergence: time to emergence (days), emergence body length (mm), and total growth from hatch to emergence (mm), and estimates for the mean temperature (MeanT) and Degree Days each individual experienced in the rearing chambers within the raceways from hatch until the timing of emergence. Note: Thermal incubation treatments were coded as A=Warm, B=Variable, C=Ambient, and D=Cold prior to analysis of the data.
DOI: 10.5061/dryad.r0160/3
title: Study 3 Data

description: Participants represented in Study 3, including the following data for each: sample, age, sex, saliva collection time, testosterone, cortisol, and vocal fundamental frequency
DOI: 10.5061/dryad.r817s/1
title: MS-AFLP_data

description: Methylation profiles (binary data) for P. elegans polychaetes (collected from Denmark). Data transformed with two different scoring methods (2 sheets in the file).
DOI: 10.5061/dryad.rm611/1
title: MHC-I genotypes and family information

description: The file includes three sheets: (i) MHC-I genotypes (columns: individual ID, individual coverage, allele name and allele coverage), (ii) family information for 130 families (columns: family ID, male name male, female name and juvenile name), (iii) family information for 40 families used to estimate genetic architecture (columns: family ID, individual ID, status, sex, allele name and the relative coverage for each allele).
DOI: 10.5061/dryad.ss6c9/1
title: RADcap_optimized_Plate5, read 2
DOI: 10.5061/dryad.ss6c9/2
title: RADcap_optimized_Plate5, Read 1
DOI: 10.17632/4h92jcj6mf.1
title: L3

description: HYDROGEN PRODUCTION
DOI: 10.5061/dryad.0sc0s/1
title: Taxonomic assignments using mlCOI barcode

description: The file contains the taxonomic assignments for reads obtained using mlCOI barcode across all stations for each sample source, DNA type (Extracellular, Bulk or Pooled DNA) and PCR annealing temperature (46 °C, 50 °C or, TD). Ecological Group (EG) for each taxa according AMBI is detailed and number of reads transformed into relative proportions shown. Presence/absence of taxa found using traditional identification at each station is represented by x.
DOI: 10.5061/dryad.0sc0s/2
title: Taxonomic assignments using folCOI barcode

description: The file contains the taxonomic assignments for reads obtained using folCOI barcode across all stations for each sample source, DNA type (Extracellular, Bulk or Pooled DNA) and PCR annealing temperature (46 °C, 50 °C or, TD). Ecological Group (EG) for each taxa according AMBI is detailed and number of reads transformed into relative proportions shown. Presence/absence of taxa found using traditional identification at each station is represented by x.
DOI: 10.5061/dryad.0sc0s/3
title: Unique Sequences mlCOI barcode

description: Following Illumina MiSeq sequencing of the mlCOI barcode of 114 samples, 130,670 unique metazoan sequences were identified. The zip file contains a fasta file with all the unique sequences and a table showing the distribution of sequencing reads for all unique sequences across the 114 samples for each DNA type (extracellular (ext), Bulk or Pooled DNA) and PCR annealing temperature (46 °C, 50 °C or, TD).
DOI: 10.5061/dryad.20627/11
title: Socio-economic Datasets

description: Socio-economic variables related to demography, education, income, work, agriculture, quality of life, poverty, and gold mining in Amazonian municipalities of Brazil.
DOI: 10.5061/dryad.20627/12
title: Hydroelectric Dams Dataset

description: Information for operating large hydroelectric dams (&gt; 30 MW) in the Brazilian Amazon, including the following variables: dam name, affected river, construction start date, reservoir fill date, operation date, approved energy output, actual energy output, reservoir area, municipalities directly affected by the dam, and area of each municipality flooded by the dam.
DOI: 10.5061/dryad.20627/13
title: Municipal Map (2010) for Brazilian Amazon

description: Original 2010 digital municipal map shape files for the Brazilian Amazon states of Acre, Amapa, Amazonas, Maranhao, Mato Grosso, Para, Rondonia, Roraima, and Tocantins. Maps are produced by the Brazilian Institute of Geography and Statistics (Instituto Brasileira de Geografia e Estatistica - IBGE; www.ibge.gov.br). Downloads can be made by state from the ftp site: ftp://geoftp.ibge.gov.br/malhas_digitais/municipio_2010/.
DOI: 10.5061/dryad.20627/14
title: Original Health Datasets

description: Originally downloaded health datasets for dengue fever, cutaneous leishmaniasis and HIV/AIDS.
DOI: 10.5061/dryad.304n7/1
title: Supplementary Data File - Ctenoplectus Movie Rendering

description: Movie rendering of digitally-prepared specimen of NHMUK PV P. 63336, Ctenoplectus williamsi gen. et sp. nov.
DOI: 10.5061/dryad.304n7/2
title: Supplementary Data File - Ctenoplectus_P63336_laser_surface_scan

description: 3D surface model of NHMUK PV P. 63336 Ctenoplectus williamsi, gen. et sp. nov. specimen.
DOI: 10.5061/dryad.304n7/3
title: Supplementary Data File - Ctenoplectus_morphological_matrix

description: Morphological character matrix of Santini and Tyler (2003) including scoring of †Ctenoplectus williamsi gen. et sp. nov.
DOI: 10.5061/dryad.304n7/4
title: Supplementary Data File - Genbank Accession Numbers

description: Genbank accession numbers for taxa not drawn from Santini et al.'s (2013) molecular phylogenetic analysis of Tetraodontiformes.
DOI: 10.5061/dryad.304n7/8
title: Supplementary Data File - PLY models of NHMUK PV P. 63336

description: 3D model of digitally-prepared skeleton of NHMUK PV P. 63336 Ctenoplectus williamsi, gen. et sp. nov., consisting of individual PLY files for separate skeletal regions.
DOI: 10.5061/dryad.57gj4/1
title: ITS_Brassicaceae_dataset

description: ITS matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/2
title: phyA_Brassicaceae_dataset

description: phyA matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/3
title: chs_Brassicaceae_dataset

description: chs matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/4
title: ndhF_Brassicaceae_dataset

description: ndhF matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/5
title: rbcL_Brassicaceae_dataset

description: rbcL matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/6
title: matK_Brassicaceae_dataset

description: matK matrix from Brassicaceae dataset
DOI: 10.5061/dryad.57gj4/7
title: trnLF_Brassicaceae_dataset

description: trnLF matrix from Brassicaceae dataset
DOI: 10.5061/dryad.67g0t/1
title: Ord_TJ_EVOL_16-0165R2_metaanalysis_nulldistribution

description: Data from fishbase.org on the number of genera within particular ecological categories used as the null distribution for meta-analysis
DOI: 10.5061/dryad.67g0t/2
title: Ord_TJ_EVOL_16-0165R2_species_ratings

description: Behavioral ratings (degree of amphibious behavior) for all blenny species surveyed
DOI: 10.5061/dryad.67g0t/3
title: Ord_TJ_EVOL_16-0165R2_consensus_phylogenies

description: Consensus phylogenies using Bayesian inference, maximum likelihood or coalescence-based species tree methods
DOI: 10.5061/dryad.67g0t/4
title: Ord_TJ_EVOL_16-0165R2_BIphylogeny_posteriordistribution

description: Entire posterior distribution (minus burn-in) used to create Bayesian inference consensus tree
DOI: 10.5061/dryad.67g0t/5
title: Ord_TJ_EVOL_16-0165R2_plasticity

description: Within taxon data for Praealticus labrovittas and Entromacrodus striatus on Guam
DOI: 10.5061/dryad.6f785/3
title: Stacyetal_HeredityMay2016_IndividualSeedlingPhenotypes
DOI: 10.5061/dryad.6f785/4
title: Stacyetal_HeredityMay2016_Midparent&MidoffspringPhenotypes
DOI: 10.5061/dryad.6f785/5
title: Stacyetal_HeredityMay2016_HybridZoneSSRGenotypes
DOI: 10.5061/dryad.6f785/6
title: Stacyetal_HeredityMay2016_SSRGenotypesSupplemented
DOI: 10.5061/dryad.72m15/1
title: reports

description: Reports (top candidates from GWAS), manhattan/eps files, and phenotypes.
DOI: 10.5061/dryad.80f66/1
title: qPCR_results

description: Three Excel files for the results of qPCRs. Each file corresponds to one of three figures.
DOI: 10.5061/dryad.831g4/1
title: Gochman_et_al_data_aye_aye

description: This is the raw data collected from the aye-ayes. It includes both DPME counts and mass consumed in grams for each variable. ReadMe file explains how data were derived, processed, and analysed.
DOI: 10.5061/dryad.831g4/2
title: Gochman_et_al_data_loris

description: This is the raw data collected from the slow loris. It includes mass consumed in grams for each variable. ReadMe file explains how data were derived, processed, and analysed.
DOI: 10.5061/dryad.8qp00/1
title: Explanation of variables

description: This file provides an explanation for variables used in all other data files associated with this manuscript.
DOI: 10.5061/dryad.8qp00/2
title: ALL Males RS

description: Reproductive success data for all males in the study.
DOI: 10.5061/dryad.8qp00/3
title: Exptl Males Before After Treatment

description: Data for experimental males before and after plumage treatment
DOI: 10.5061/dryad.8qp00/4
title: Untreated Males RS & Plumage

description: Data for male reproductive success and plumage color of untreated males.
DOI: 10.5061/dryad.8qp00/5
title: WPS vs EPS Paired Plumage

description: Plumage data paired for within-pair sires and the extra-pair sire(s) that cuckolded them.
DOI: 10.5061/dryad.c8290/1
title: Wnt5a Data

description: Vascular morphometry data
DOI: 10.5061/dryad.f83c6/1
title: Hamer et al_2016_JAPPLE_Habitat&Detection_Data

description: This file contains data on effective wetland area and mean proportion cover of aquatic vegetation at 33 sites sampled in each of four years. The water chemistry parameters electrical conductivity (EC, log transformed) and turbidity (ntu) are provided as a mean over the four years of sampling. A detection matrix is provided that contains a '1' whenever Litoria raniformis was detected during a survey. 'NA' denotes that a survey was not conducted at that time. A distance matrix includes edge-to-edge distances (metres) between all 33 sites.
DOI: 10.5061/dryad.f83c6/2
title: Hamer et al_2016_JAPPL_base model

description: This file contains OpenBUGS code for deriving estimates of initial site occupancy, local colonisation and extinction, number of occupied sites and metapopulation growth rate from a Base model. Parameters included are effective wetland area (effarea), mean cover of aquatic vegetation (aqveg) and connectivity (conn).
DOI: 10.5061/dryad.f83c6/3
title: Hamer et al_2016_JAPPL_water quality

description: This file contains OpenBUGS code for deriving estimates of initial site occupancy, local colonisation and extinction, number of occupied sites and metapopulation growth rate from a model of Water Quality. Parameters included are effective wetland area (effarea), mean cover of aquatic vegetation (aqveg), connectivity (conn), turbidity (turb) and electrical conductivity (cond).
DOI: 10.5061/dryad.jm090/1
title: Wild boar microsatellites genotypes

description: Include original genotypes for 11 microsatellites analyzed in wild boars from the Balkans, Iberia, Italy and Central-eastern Europe.
DOI: 10.5061/dryad.k6618/1
title: Galicia et al polar bear and prey fatty acid data
DOI: 10.5061/dryad.m717n/1
title: Main table

description: Primary data supporting analyses in Duran et al., principally Figure 1, Tables 1 and 2, and S1 and S2 Tables.
DOI: 10.5061/dryad.m717n/2
title: Daily temperature and precipitation

description: Daily temperature and precipitation data for 2011 and 2012 from an automated weather station located on one switchgrass plot from the experiment. Support S1 Figure.
DOI: 10.5061/dryad.mb780/1
title: Digital droplet PCR data for a field experiment examining Saccharomyces paradoxus local adaptation
DOI: 10.5061/dryad.n7v81/2
title: Data HR
DOI: 10.5061/dryad.n7v81/3
title: Data Nest Defense
DOI: 10.5061/dryad.n7v81/4
title: Data Speed
DOI: 10.5061/dryad.r2cc3/1
title: Szymkowiak and Kuczyński - data

description: Includes data worksheet that detail: (1) behavioral responses of wood warblers to experimental treatment; (2) changes in male song rate, average song duration, number of syllables per song, and maximum song frequency between experimental stages.
DOI: 10.5061/dryad.ss6c9/10
title: RADcap_5cycle_Plate2, Read 1
DOI: 10.5061/dryad.ss6c9/3
title: RADcap_Low_Template_Plate1, Read 2
DOI: 10.5061/dryad.ss6c9/4
title: RADcap_Low_Template_Plate1, Read 1
DOI: 10.5061/dryad.ss6c9/5
title: RADcap_5cycle_Plate4, Read 2
DOI: 10.5061/dryad.ss6c9/6
title: RADcap_5cycle_Plate4, Read 1
DOI: 10.5061/dryad.ss6c9/7
title: RADcap_5cycle_Plate3, Read 2
DOI: 10.5061/dryad.ss6c9/8
title: RADcap_5cycle_Plate3, Read 1
DOI: 10.5061/dryad.ss6c9/9
title: RADcap_5cycle_Plate2, Read 2
DOI: 10.5061/dryad.0sc0s/4
title: Unique Sequences folCOI barcode

description: Following Illumina MiSeq sequencing of the folCOI barcode of 110 samples, 652,356 unique metazoan sequences were identified. The zip file contains a fasta file with all the unique sequences and a table showing the distribution of sequencing reads for all unique sequences across the 110 samples for each DNA type (extracellular (ext), Bulk or Pooled DNA) and PCR annealing temperature (46, 50 or TD).
DOI: 10.5061/dryad.1vn46/1
title: 2011 genotypes msat 50

description: Microsatellite genotypes of offspring and adult black-throated blue warblers. Loci and sample call rate &gt;50%.
DOI: 10.5061/dryad.1vn46/2
title: 2011 genotypes snps 50

description: SNPs genotypes of offspring and adult black-throated blue warblers. Loci and sample call rate &gt;50%.
DOI: 10.5061/dryad.1vn46/3
title: 2012 genotypes msats 50

description: Microsatellite genotypes of offspring and adult black-throated blue warblers. Loci and sample call rate &gt;50%.
DOI: 10.5061/dryad.2qg01/1
title: Genomic read data for Fraser Estuary in bam format

description: Bam file with genomic read data (HiSeq 2000, 100bp paired end reads, sequencing of 44 pooled  Cottus fishes from Fraser River Estuary)
DOI: 10.5061/dryad.2qg01/2
title: Genomic read data for Capilano Estuary in bam format

description: Bam file with genomic read data (HiSeq2000, 100bp paired-end reads, pooled sequences of 44 Cottus individuals from Capilano Estuary)
DOI: 10.5061/dryad.304n7/10
title: Supplementary Figure 3

description: Figure 3: Kernel probability-density estimates of divergence times for crown Tetraodontiformes and extant tetraodontiform families.
DOI: 10.5061/dryad.304n7/11
title: Supplementary Figure 4

description: Figure 4: Median among-branch morphological rate estimates for internal (red circles) and terminal (yellow triangles) branches on the Maximum Sampled-Ancestor Clade Credibility tree, using midpoint ages. Moving averages are represented by solid LOESS lines.
DOI: 10.5061/dryad.304n7/12
title: Table 1 - GenBank accession numbers

description: GenBank accession numbers for Zeus faber and Kentrocapros rosapinto sequences.
DOI: 10.5061/dryad.304n7/13
title: Table 2 - PartitionFinder Scheme

description: Optimal partitioning scheme as determined by PartitionFinder.
DOI: 10.5061/dryad.304n7/5
title: Supplementary Data File - Ctenoplectus BEAST XML

description: XML file for BEAST Total Evidence tip-dating analysis of Tetraodontiformes.