cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17182/hepdata.105868.v1/t15
title: "Table 15" of "Transverse spin-dependent azimuthal correlations of charged pion pairs measured in p$^\uparrow$+p collisions at $\sqrt{s}$ = 500 GeV"

description: $A_{UT}$ as a function of $$ for $$ = 1.0 GeV/$c^{2}$ for $\eta &gt; 0$. In addition to statistical uncertainties, systematic uncertainties originating from PID and trigger bias systematic uncertainties are also mentioned. The systematic uncertainty numbers marked with (*) are based on marker size, and may not reflect actual experimental uncertainties.
description: No data abstract available.
DOI: 10.17182/hepdata.128137.v1/t18
title: "Table 18" of "Measurement of the groomed jet radius and momentum splitting fraction in pp and Pb$-$Pb collisions at $\sqrt{s_{NN}} = 5.02$ TeV"

description: Groomed jet radius (scaled) $\theta_{{\mathrm{g}}}$ $-$ ratio of Pb-Pb to pp collisions.
$60
description: No data abstract available.
DOI: 10.17182/hepdata.166737.v1/t1
title: "Figure 1 top left, panel a" of "Accessing the deuteron source with pion-deuteron femtoscopy in Pb-Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$ TeV"

description: pion-deuteron (same charge) correlation function for centrality 0-10% from Pb-Pb collisions at 5020 GeV
description: Femtoscopy of non-identical particle pairs has been instrumental for precision measurements of both two-particle sources and the final-state interactions in high-energy elementary and heavy-ion collisions. The majority of measurements assessing the source properties are based on identical particle pairs, providing direct access to the characteristics of the single-particle source. The work in this paper demonstrates, via femtoscopy measurements of charged pion--deuteron pairs in Pb--Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$~TeV, the feasibility of accessing the characteristics of the single-particle femtoscopic source by using particle pairs with large mass differences such as pions and deuterons. The first experimental results of the measurement of deuteron source sizes in ultrarelativistic heavy-ion collisions are presented. The results show good agreement with the trend derived from other charged hadrons such as pions, kaons, and protons as a function of transverse mass, indicating similar source properties.
DOI: 10.17182/hepdata.166737.v1/t2
title: "Figure 1 top centre, panel b" of "Accessing the deuteron source with pion-deuteron femtoscopy in Pb-Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$ TeV"

description: pion-deuteron (same charge) correlation function for centrality 10-30% from Pb-Pb collisions at 5020 GeV
description: Femtoscopy of non-identical particle pairs has been instrumental for precision measurements of both two-particle sources and the final-state interactions in high-energy elementary and heavy-ion collisions. The majority of measurements assessing the source properties are based on identical particle pairs, providing direct access to the characteristics of the single-particle source. The work in this paper demonstrates, via femtoscopy measurements of charged pion--deuteron pairs in Pb--Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$~TeV, the feasibility of accessing the characteristics of the single-particle femtoscopic source by using particle pairs with large mass differences such as pions and deuterons. The first experimental results of the measurement of deuteron source sizes in ultrarelativistic heavy-ion collisions are presented. The results show good agreement with the trend derived from other charged hadrons such as pions, kaons, and protons as a function of transverse mass, indicating similar source properties.
DOI: 10.5061/dryad.4s1d2
title: Data from: Allometric convergence in savanna trees and implications for plant scaling models in variable ecosystems

description: Theoretical models of allometric scaling provide frameworks for
 understanding and predicting how and why the morphology and function of
 organisms vary with scale. It remains unclear, however, if the predictions
 of ‘universal’ scaling models for vascular plants hold across diverse
 species in variable environments. Phenomena such as competition and
 disturbance may drive allometric scaling relationships away from
 theoretical predictions based on an optimized tree. Here, we use a
 hierarchical Bayesian approach to calculate tree-specific,
 species-specific, and ‘global’ (i.e. interspecific) scaling exponents for
 several allometric relationships using tree- and branch-level data
 harvested from three savanna sites across a rainfall gradient in Mali,
 West Africa. We use these exponents to provide a rigorous test of three
 plant scaling models (Metabolic Scaling Theory (MST), Geometric
 Similarity, and Stress Similarity) in savanna systems. For the allometric
 relationships we evaluated (diameter vs. length, aboveground mass, stem
 mass, and leaf mass) the empirically calculated exponents broadly
 overlapped among species from diverse environments, except for the scaling
 exponents for length, which increased with tree cover and density. When we
 compare empirical scaling exponents to the theoretical predictions from
 the three models we find MST predictions are most consistent with our
 observed allometries. In those situations where observations are
 inconsistent with MST we find that departure from theory corresponds with
 expected tradeoffs related to disturbance and competitive interactions. We
 hypothesize savanna trees have greater length-scaling exponents than
 predicted by MST due to an evolutionary tradeoff between fire escape and
 optimization of mechanical stability and internal resource transport.
 Future research on the drivers of systematic allometric variation could
 reconcile the differences between observed scaling relationships in
 variable ecosystems and those predicted by ideal models such as MST.
description: Mali_Savanna_AllometricDataThis is data collected in the field from three sites in Mali, West Africa. See publication for description of field sites. Diameter and length are measured in centimeters. All weights for biomass are measured in grams.
DOI: 10.5061/dryad.3q0b1r1
title: Data from: Bee and floral traits affect the characteristics of the vibrations experienced by flowers during buzz-pollination

description: During buzz pollination, bees use their indirect flight muscles to produce
 vibrations that are transmitted to the flowers and result in pollen
 release. Although buzz pollination has been known for &gt;100 years,
 we are still in the early stages of understanding how bee and floral
 characteristics affect the production and transmission of floral
 vibrations. Here we analysed floral vibrations produced by four closely
 related bumblebee taxa (Bombus spp.) on two buzz-pollinated plants species
 (Solanum spp.). We measured floral vibrations transmitted to the flower to
 establish the extent to which the mechanical properties of floral
 vibrations depend on bee and plant characteristics. By comparing four bee
 taxa visiting the same plant species, we found that peak acceleration
 (PA), root mean-squared acceleration (RMS) and frequency varies between
 bee taxa, but that neither bee size (intertegular distance) or flower
 biomass (dry weight) affect PA, RMS or frequency. A comparison of floral
 vibrations of two bee taxa visiting flowers of two plant species, showed
 that, while bee species affects PA, RMS and frequency, plant species
 affects acceleration (PA and RMS) but not frequency. When accounting for
 differences in the transmission of vibrations across the two types of
 flowers, using a species-specific 'coupling factor', we found
 that RMS acceleration and peak displacement does not differ between plant
 species. This suggests that bees produce the same initial acceleration in
 different plants but that transmission of these vibrations through the
 flower is affected by floral characteristics.
description: buzzdata_20181214Dataset of recorded floral vibrations for: Arroyo-Correa, Beattie and Vallejo-Marin. Bee and floral traits affect the characteristics of the vibrations experienced by flowers during buzz-pollination.
DOI: 10.5061/dryad.1vc8g
title: Data from: Evolution of male and female choice in polyandrous systems

description: We study the evolution of male and female mating strategies and mate
 choice for female fecundity and male fertilization ability in a system
 where both sexes can mate with multiple partners, and where there is
 variation in individual quality (i.e. in the availability of resources
 individuals can allocate to matings, mate choice and production of
 gametes). We find that when the cost of mating differs between sexes, the
 sex with higher cost of mating is reluctant to accept matings and is often
 also choosy, while the other sex accepts all matings. With equal mating
 costs, the evolution of mating strategies depends on the strength of
 female sperm limitation, so that when sperm limitation is strong, males
 are often reluctant and choosy, whereas females tend to accept available
 matings. Male reluctance evolves because a male's benefit per mating
 diminishes rapidly as he mates too often, hence losing out in the process
 of sperm competition as he spends much of his resources on mating costs
 rather than ejaculate production. When sperm limitation is weaker, females
 become more reluctant and males are more eager to mate. The model thus
 suggests that reversed sex roles are plausible outcomes of polyandry and
 limited sperm production. Implications for empirical studies of mate
 choice are discussed.
description: Matlab function
 run_matechoice10.mThis function tracks
 evolution iteratively by updating strategies in small steps in the
 direction of selection.run_matechoice10.mMatlab function matechoice18.mThis function can be called in two ways: 1) Called with let_evolve==1, it calculates fitness for the resident strategy and classes*classes*2 mutant strategies, which differ from the resident strategy by delta in one parameter at a time (either higher or lower). It then creates an updated resident strategy in which each parameter has been changed in the direction of selection. 2) Called with let_evolve==0, it calculates mutant fitness of 10 levels per behavioural parameter for plotting, spanning the whole range of possible values.matechoice18.mMatlab function Wf.mWf(E,cf,saturation,x,t) female fitness as a function of fecundity E, mating costs cf, the sperm 'saturation' parameter, number of matings x, and sperm load t. We use a cumulative negative exponential function, which can be interpreted biologically such that stored sperm passes at a constant rate through a fertilisation duct at the time of fertilisation, and eggs are fertilised at a constant rate as long as stored sperm pass through the duct.Wf.mMatlab function rule02.mCalculates the probability of accepting mates of given target_qualities, based on the response function of each actor class (specified in rows of 'strategy')rule02.mMatlab function poi.mPoisson distributionpoi.m
DOI: 10.5061/dryad.27t0v5m
title: Data from: Leaf-cutter ants engineer large nitrous oxide hot spots in tropical forests

description: Though tropical forest ecosystems are among the largest natural sources of
 the potent greenhouse gas nitrous oxide (N2O), the spatial distribution of
 emissions across landscapes is often poorly resolved. Leaf-cutter ants
 (LCA, Atta and Acromyrmex, Myrmicinae) are dominant herbivores throughout
 Central and South America and influence multiple aspects of forest
 structure and function. In particular, their foraging creates spatial
 heterogeneity by concentrating large quantities of organic matter
 (including nitrogen, N) from the surrounding canopy into their colonies,
 and ultimately, into colony refuse dumps. Here, we demonstrate that refuse
 piles created by LCA species Atta colombica in tropical rainforests of
 Costa Rica provide ideal conditions for extremely high rates of N2O
 production (high microbial biomass, potential denitrification enzyme
 activity, N content, and anoxia), and may represent an unappreciated
 source of heterogeneity in tropical forest N2O emissions. Average
 instantaneous refuse pile N2O fluxes surpassed background emissions by
 more than three orders of magnitude (in some cases exceeding 80,000 μg
 N2O-N m-2 h-1) and generating fluxes comparable to or greater than those
 produced by engineered systems such as wastewater treatment tanks.
 Refuse-concentrating Atta species are ubiquitous in tropical forests,
 pastures and production ecosystems, and increase density strongly in
 response to disturbance. As such, LCA colonies may represent an
 unrecognised greenhouse gas point source throughout the Neotropics.
description: Atta colombica refuse
 pile trace gas fluxes and chemical and microbial
 characteristicsFluxes of N2O, CO2 and
 CH4 from refuse piles and colonies of leaf cutter ant Atta colombica and
 adjacent forest in a lowland tropical rainforest in southwest Costa Rica.
 Chemical and microbial characteristics of Atta colombica refuse (inorganic
 nitrogen concentrations, total carbon and nitrogen content, carbon and
 nitrogen isotopic ratios, microbial biomass and 16S and ITS abundance).
 Colony density surveys of Atta colombica and Atta cephalotes in primary
 and secondary tropical rainforest of southwest Costa
 Rica.Soper_ProcB
 2018.xlsx
DOI: 10.5061/dryad.s32ds
title: Data from: Inter-locus sexually antagonistic coevolution creates indirect selection for increased recombination

description: The ubiquity of recombination in nature is a paradox because it breaks up
 combinations of alleles favored by natural selection. Theoretical work has
 shown that antagonistic coevolution between hosts and parasites can result
 in rapid fluctuations in epistasis, which can create a short-term
 advantage to recombination. Here we show that another kind of antagonistic
 coevolution, inter-locus sexually antagonistic coevolution (SAC), can also
 create indirect selection for modifiers that increase the rate of
 recombination, and that it can lead to very high levels of recombination
 at equilibrium. Recombination is favored because inter-locus SAC creates
 heterogeneity in the strength and direction of selection, both within and
 between generations, which maintains an excess of disadvantageous
 haplotypes in the population. This result is similar to and consistent
 with dynamics of fluctuating epistasis produced in models of host-parasite
 coevolution. However, the conditions under which inter-locus SAC provides
 an advantage to recombination are more permissive.
description: Effect of SAC on
 Recombination - Matlab CodeThis file contains the
 Matlab code used to determine the effect of inter-locus sexually
 antagonistic coevolution on recombination rate.SACrecDRYAD.m
DOI: 10.5061/dryad.pj784
title: Data from: Similar levels of trophic and functional diversity within damselfish assemblages across Indo–Pacific coral reefs

description: 1. Understanding the forces that influence the dynamics of communities is
 a key challenge to undertake in changing environments. Despite recent
 advances in coral reef community ecology, a more comprehensive knowledge
 about processes (niche related–traits and phylogenies) driving the
 composition of reef fish community is needed. 2. Here, we conducted a
 quantitative comparison of these processes in damselfish assemblages that
 belong to three distinct Indo–Pacific coral reefs differing in taxonomic
 composition, morphology and degree of human disturbance. 3. We compiled a
 dataset of eight categorical variables to estimate functional diversity of
 damselfish assemblages and a second one of stable isotope ratios to
 evaluate isotopic diversity, a proxy of trophic diversity. Both datasets
 represent the eco–functional diversity and provide insight into
 niche–related traits. Indices were then computed to grasp complementary
 facets of this diversity: the size of multidimensional space (richness),
 the partitioning of niches (divergence) and the regularity in the
 distribution of niches (evenness) within each space. We also tested
 whether functional and trophic traits displayed some evolutionary niche
 conservatism. 4. We found that functional richness was influenced by the
 number of species and functional entities (FEs, unique combination of
 trait values), while functional spaces mainly overlapped. Functional
 divergence and evenness indices were similarly high. For trophic
 diversity, the isotopic richness remained equivalent, while the two other
 indices were of high values and did not significantly differ. Both
 functional and trophic traits did not display any phylogenetic
 conservatism. 5. We demonstrated consistent levels of eco–functional
 diversity in Indo–Pacific coral reef damselfishes. Each assemblage hosted
 species whose niches were highly differentiated and evenly distributed in
 eco-functional spaces of similar sizes, albeit the size of functional
 space varied with the species richness. Assemblages also tended to share
 similar functional attributes. The inconsistent phylogenetic structures of
 eco–functional traits and the similarity in diversity indices suggest that
 the assemblage composition of damselfishes is mainly driven by
 niche-related processes rather than by phylogenetic relatedness. Our work
 helps to determine which mechanisms shape coral reef fish biodiversity and
 more particularly assemblages issued from replicated events of ecological
 radiation.
description: The isotopic data of
 damselfish assemblages from Madagascar, Dongsha and
 MooreaValues of carbon and
 nitrogen stable isotope ratios of 583 damselfish individuals, which belong
 to 55 species and were caught during three respective sampling campaigns:
 the Great Reef of Madagascar in November 2005 (Frédérich et al. 2009),
 Dongsha Atoll in May-June 2015 (Present study) and Moorea Island in
 April-June 2014 (Gajdzik et al. 2016).Gajdzik_et_al_2018_(Funct.
 Ecol.)_isotopic_data.xlsx
DOI: 10.21227/d0ex-qf92
title: "Vib2ECG: A Paired Chest-Lead SCG\u2013ECG Dataset and Benchmark for ECG Reconstruction"

description: "We present the first paired, multi-location chest-lead ECG-SCG (a kind of cardiac vibration signal) dataset, enabling ECG reconstruction from cardiac vibration signals using a lightweight U-Net model. This work supports cost-effective long-term ECG monitoring and makes ECG monitoring with mobile devices such as smartphones feasible."
DOI: 10.5061/dryad.9039
title: Data from: Age-specific breeding success in a wild mammalian population: selection, constraint, restraint, and senescence

description: The Selection, Constraint, Restraint, and Senescence Hypotheses predict
 how breeding success should vary with age. The Selection Hypothesis
 predicts between-individual variation arising from quality differences;
 the other hypotheses predict within-individual variation due to differing
 skills or physiological condition (Constraint), residual reproductive
 lifespan (Restraint), or somatic and reproductive investment (Senescence).
 Studies tend to focus on either the initial increase in breeding success
 or later decrease; however, both require consideration when unravelling
 the underlying evolutionary processes. Additionally, few studies present
 genetic fitness measures, and rarely for both sexes. We therefore test
 these four hypotheses, which are not mutually exclusive, in a high-density
 population of European badgers Meles meles. Using an 18-year dataset
 (including 22 microsatellite loci) we show an initial improvement in
 breeding success with age, followed by a later and steeper rate of
 reproductive senescence in males than in females. Breeding success was
 skewed within age-classes indicating the influence of factors other than
 age-class. This was partly attributable to selective appearance and
 disappearance of badgers (Selection Hypothesis). Individuals with a late
 age of last breeding showed a concave down relationship between breeding
 success and experience (Constraint Hypothesis). There was no evidence of
 abrupt terminal effects; rather, individuals showed a concave down
 relationship between breeding success and residual reproductive lifespan
 (Restraint Hypothesis), with an interaction with age of first breeding
 only in females. Our results demonstrate the importance of investigating a
 comprehensive suite of factors in age-specific breeding success analyses,
 in both sexes, in order to fully understand evolutionary and population
 dynamics.
description: DRYAD_Data_MEC_11_0123_SubmittedID = badger ID, Age = age in years when the cub(s) was born, Year = code for the year in which the cub(s) were born, No_Cubs = number of cubs that were assigned to the individual in that year, AFB = age of first breeding (age [years] at which they were first assigned parentage), ALB = age of last breeding (age [years] at which they were last assigned parentage), sex = 2 (female) or 1 (male), Terminal_event = 1 (last breeding attempt, whether or not this was successful) or 0 (all other breeding attempts), Probability_Bred = 0 (not assigned cubs in that year) or 1 (assigned cubs in that year)
DOI: 10.5061/dryad.27g0v
title: Data from: Amyloid precursor protein translation is regulated by a 3'UTR guanine quadruplex

description: A central event in Alzheimer’s disease is the accumulation of amyloid β
 (Aβ) peptides generated by the proteolytic cleavage of the amyloid
 precursor protein (APP). APP overexpression leads to increased Aβ
 generation and Alzheimer’s disease in humans and altered neuronal
 migration and increased long term depression in mice. Conversely,
 reduction of APP expression results in decreased Aβ levels in mice as well
 as impaired learning and memory and decreased numbers of dendritic spines.
 Together these findings indicate that therapeutic interventions that aim
 to restore APP and Aβ levels must do so within an ideal range. To better
 understand the effects of modulating APP levels, we explored the
 mechanisms regulating APP expression focusing on post-transcriptional
 regulation. Such regulation can be mediated by RNA regulatory elements
 such as guanine quadruplexes (G-quadruplexes), non-canonical structured
 RNA motifs that affect RNA stability and translation. Via a bioinformatics
 approach, we identified a candidate G-quadruplex within the APP mRNA in
 its 3’UTR (untranslated region) at residues 3008–3027 (NM_201414.2). This
 sequence exhibited characteristics of a parallel G-quadruplex structure as
 revealed by circular dichroism spectrophotometry. Further, as with other
 G-quadruplexes, the formation of this structure was dependent on the
 presence of potassium ions. This G-quadruplex has no apparent role in
 regulating transcription or mRNA stability as wild type and mutant
 constructs exhibited equivalent mRNA levels as determined by real time
 PCR. Instead, we demonstrate that this G-quadruplex negatively regulates
 APP protein expression using dual luciferase reporter and Western blot
 analysis. Taken together, our studies reveal post-transcriptional
 regulation by a 3’UTR G-quadruplex as a novel mechanism regulating APP
 expression.
description: Crenshaw et al data
 file