cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0188358.10fu
title: SH0188358.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188359.10fu
title: SH0188359.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188360.10fu
title: SH0188360.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188361.10fu
title: SH0188361.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188362.10fu
title: SH0188362.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188363.10fu
title: SH0188363.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188364.10fu
title: SH0188364.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188365.10fu
title: SH0188365.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.kknch9
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Africorchestia quadrispinosa (K.H.Barnard, 1916))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008514-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83jnzx
title: Occurrence Download

description: A dataset containing 28692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chenopodium ficifolium Sm.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 28692 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008513-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15202223
title: Phase diagram and universal scaling regimes of two-dimensional exciton-polariton Bose-Einstein condensates

description: This repository contains all the datas and documentation required to reproduce the figures of this article, in which we investigate the phase diagram and universal scaling regimes of a two dimensional exciton-polariton Bose-Einstein condensate. The condensates dynamics is described by a generalized Gross-Pitaevskii equation (gGPE) coupled to an exciton reservoir, which we solve in space and time for different values of the blueshift at threshold. In doing so, we are able to adjust the effective nonlinearity of the condensate phase across a broad range of values, and identify three different universal regime in the nonequilibrium stationary state of the condensate: the Edwards-Wilkinson regime, the Kardar-Parisi-Zhang regime, and a vortex dominated regime. All these documents as well as a small tutorial are available following this gitlab link.
DOI: 10.5281/zenodo.15202224
title: Phase diagram and universal scaling regimes of two-dimensional exciton-polariton Bose-Einstein condensates

description: This repository contains all the datas and documentation required to reproduce the figures of this article, in which we investigate the phase diagram and universal scaling regimes of a two dimensional exciton-polariton Bose-Einstein condensate. The condensates dynamics is described by a generalized Gross-Pitaevskii equation (gGPE) coupled to an exciton reservoir, which we solve in space and time for different values of the blueshift at threshold. In doing so, we are able to adjust the effective nonlinearity of the condensate phase across a broad range of values, and identify three different universal regime in the nonequilibrium stationary state of the condensate: the Edwards-Wilkinson regime, the Kardar-Parisi-Zhang regime, and a vortex dominated regime. All these documents as well as a small tutorial are available following this gitlab link.
DOI: 10.15468/dl.cpdach
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.655338 -32.636483, 147.655338 -32.640975, 147.653092 -32.640975, 147.653092 -32.638729, 147.650846 -32.638729, 147.650846 -32.649958, 147.639617 -32.649958, 147.639617 -32.652204, 147.637371 -32.652204, 147.637371 -32.656695, 147.644109 -32.656695, 147.644109 -32.661187, 147.6486 -32.661187, 147.6486 -32.656695, 147.653092 -32.656695, 147.653092 -32.64322, 147.659829 -32.64322, 147.659829 -32.640975, 147.662075 -32.640975, 147.662075 -32.636483, 147.655338 -32.636483))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067282-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26677886.v1
title: Additional file 1 of Potential types of bias when estimating causal effects in environmental research and how to interpret them

description: Additional file 1. Excluded types of bias.
DOI: 10.6084/m9.figshare.26677886
title: Additional file 1 of Potential types of bias when estimating causal effects in environmental research and how to interpret them

description: Additional file 1. Excluded types of bias.
DOI: 10.6084/m9.figshare.26677889
title: Additional file 2 of Potential types of bias when estimating causal effects in environmental research and how to interpret them

description: Additional file 2. Included types of bias.
DOI: 10.6084/m9.figshare.26677889.v1
title: Additional file 2 of Potential types of bias when estimating causal effects in environmental research and how to interpret them

description: Additional file 2. Included types of bias.
DOI: 10.6084/m9.figshare.26677892
title: Additional file 1 of Transcriptomic analysis of developing sorghum grains to detect genes related to cell wall biosynthesis and remodelling

description: Additional file 1. List of the cell wall genes sorted from our transcriptomic analysis and their quantification.
DOI: 10.6084/m9.figshare.26677892.v1
title: Additional file 1 of Transcriptomic analysis of developing sorghum grains to detect genes related to cell wall biosynthesis and remodelling

description: Additional file 1. List of the cell wall genes sorted from our transcriptomic analysis and their quantification.
DOI: 10.15468/dl.4d89jj
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (66522820-055c-11d8-b84e-b8a03c50a862, 2a7e3080-28a9-11dd-97cd-b8a03c50a862)",
 "TaxonKey is Trichechus inunguis (Natterer, 1883)"
 ]
}

 The dataset's 1 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067221-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyjgry
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is one of (Herbario Amazónico Colombiano, Herbario CDMB - Jardín Botánico Eloy Valenzuela, Herbario Nacional Colombiano (COL), Herbario TULV - Jardín Botánico \"Juan María Céspedes\", Herbario Enrique Forero de la Universidad de la Amazonia (HUAZ), Colección Herbario Federico Medem Bogotá - FMB)",
 "OccurrenceStatus is Present",
 "TaxonKey is Heliconia rostrata Ruiz & Pav."
 ]
}

 The dataset's 1 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067226-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p1dnbyqq
title: Limit of Salt in the Gulf Coast [saltlimitg]

description: The data provides the approximate limit of Middle Jurassic salt from Plate 2, Principal structural features, Gulf of Mexico Basin (compiled by T.E. Ewing and R.F. Lopez) in Volume J, the Geology of North America (1991).

This dataset contains basic data and interpretations developed and compiled by the U.S. Geological Survey's Framework Studies and Assessment of the Gulf Coast Project.  Other major sources of data include publicly available information from state agencies as well as publications of the U.S. Geological Survey and other scientific organizations.  In cases where company proprietary data were used to produce various derivatives such as contour surfaces, the source is cited but the data are not displayed.
DOI: 10.6084/m9.figshare.26531611
title: Data base/Banco de dados - Risk factors associated with 30-day hospital readmission of older people: case-control study

description: Data base/Banco de dados da pesquisa Risk factors associated with 30-day hospital readmission of older people: case-control study
DOI: 10.6084/m9.figshare.26531611.v1
title: Data base/Banco de dados - Risk factors associated with 30-day hospital readmission of older people: case-control study

description: Data base/Banco de dados da pesquisa Risk factors associated with 30-day hospital readmission of older people: case-control study
DOI: 10.15468/dl.dps6h8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.796204 -32.649958, 148.796204 -32.652204, 148.798449 -32.652204, 148.798449 -32.649958, 148.796204 -32.649958))"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067283-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26607232
title: Additional file 1 of Discovery of therapeutic targets for spinal cord injury based on molecular mechanisms of axon regeneration after conditioning lesion

description: Additional file 1: Table S1. The list of DEGs.
DOI: 10.6084/m9.figshare.26607232.v1
title: Additional file 1 of Discovery of therapeutic targets for spinal cord injury based on molecular mechanisms of axon regeneration after conditioning lesion

description: Additional file 1: Table S1. The list of DEGs.
DOI: 10.15468/dl.qsp6nz
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (0e2f2e28-7790-4c82-b8fb-6ef7b4c764e2, 2a7e3080-28a9-11dd-97cd-b8a03c50a862, 9d77fdeb-100f-4b29-98ad-4effdd824457)",
 "TaxonKey is Cattleya violacea (Kunth) Lindl."
 ]
}

 The dataset's 2 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26607445
title: Additional file 1 of A rare mutation causing autosomal dominant STAT1 deficiency in a South African multiplex kindred with disseminated BCG infection

description: Additional file 1: Suppl. Table 1. Total immunoglobulin and lymphocyte subset concentrations of the maternal half-brothers with BCG osteomyelitis.
DOI: 10.13026/hwzp-zq96
title: ReXPref-Prior: A MIMIC-CXR Preference Dataset for Reducing Hallucinated Prior Exams in Radiology Report Generation

description: Generative vision-language models have exciting potential implications for
radiology report generation, but unfortunately such models are also known to
produce hallucinations and other nonsensical statements. For example,
radiology report generation models regularly hallucinate prior exams, making
statements such as "The lungs are hyperinflated with emphysematous changes as
seen on prior CT" despite not having access to any prior exam. To address this
shortcoming, we propose ReXPref-Prior, an adapted version of MIMIC-CXR where
GPT-4 has removed references to prior exams from both findings and impression
sections of chest X-ray reports. We expect ReXPref-Prior will be useful for
training models that hallucinate prior exams less frequently, through
techniques such as direct preference optimization. Additionally, ReXPref-
Prior's validation and test sets can be used as a new benchmark for evaluating
report generation models.
DOI: 10.6084/m9.figshare.26607445.v1
title: Additional file 1 of A rare mutation causing autosomal dominant STAT1 deficiency in a South African multiplex kindred with disseminated BCG infection

description: Additional file 1: Suppl. Table 1. Total immunoglobulin and lymphocyte subset concentrations of the maternal half-brothers with BCG osteomyelitis.
DOI: 10.13026/t13x-4r94
title: ReXPref-Prior: A MIMIC-CXR Preference Dataset for Reducing Hallucinated Prior Exams in Radiology Report Generation

description: Generative vision-language models have exciting potential implications for
radiology report generation, but unfortunately such models are also known to
produce hallucinations and other nonsensical statements. For example,
radiology report generation models regularly hallucinate prior exams, making
statements such as "The lungs are hyperinflated with emphysematous changes as
seen on prior CT" despite not having access to any prior exam. To address this
shortcoming, we propose ReXPref-Prior, an adapted version of MIMIC-CXR where
GPT-4 has removed references to prior exams from both findings and impression
sections of chest X-ray reports. We expect ReXPref-Prior will be useful for
training models that hallucinate prior exams less frequently, through
techniques such as direct preference optimization. Additionally, ReXPref-
Prior's validation and test sets can be used as a new benchmark for evaluating
report generation models.
DOI: 10.15468/dl.mdspkd
title: Occurrence Download

description: A dataset containing 644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclopes didactylus (Linnaeus, 1758)"
 ]
}

 The dataset includes 644 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067284-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szpam5
title: Occurrence Download

description: A dataset containing 6796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.80345 21.18601,-89.82324 21.12401,-89.77311 21.05541,-89.79422 21.00397,-89.75333 20.91559,-89.71375 20.86018,-89.76784 20.84963,-89.75992 20.80214,-89.71771 20.74542,-89.69001 20.69397,-89.66626 20.65968,-89.62537 20.66495,-89.55414 20.70717,-89.52116 20.79423,-89.49346 20.85227,-89.54491 20.9235,-89.45652 20.92482,-89.43806 20.94329,-89.4064 20.96835,-89.46576 20.99737,-89.42487 21.01056,-89.42882 21.06201,-89.51325 21.07256,-89.48159 21.09103,-89.51588 21.1583,-89.52908 21.21371,-89.6412 21.21239,-89.67154 21.18073,-89.69397 21.18337,-89.74673 21.20315,-89.80345 21.18601))",
 "TaxonKey is Icterus cucullatus Swainson, 1827"
 ]
}

 The dataset includes 6796 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067285-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.