cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21294858.v1
title: CElegans_Multiplex_Neuronal.zip

description: The dataset representing the multiplex neuronal network of the nematode "Caenorhabditis Elegans". If you use this dataset in your work either for analysis or for visualization, you should acknowledge/cite the following papers: <br> “Wiring optimization can relate neuronal structure and function” Beth L. Chen, David H. Hall, and Dmitri B. Chklovskii PNAS 2006 103 (12) 4723–4728 “MuxViz: A Tool for Multilayer Analysis and Visualization of Networks” Manlio De Domenico, Mason A. Porter, and Alex Arenas Journal of Complex Networks 2015 3 (2) 159-176 that can be found at the following URLs: <br> <br> <br> This work has been supported by European Commission FET-Proactive project PLEXMATH (Grant No. 317614), the European project devoted to the investigation of multi-level complex systems and has been developed at the Alephsys Lab. <br> Visit <br> PLEXMATH: <br> ALEPHSYS: <br> for further details. <br> Caenorhabditis elegans connectome, where the multiplex consists of layers corresponding to different synaptic junctions: electric (“ElectrJ”), chemical monadic (“MonoSyn”), and polyadic (“PolySyn”). <br> The multiplex network used in the paper makes use of three layers corresponding to: <br> 1. Electric (“ElectrJ”) 2. Chemical Monadic (“MonoSyn”) 3. Chemical Polyadic (“PolySyn”) <br> There are 279 nodes, labelled with integer ID between 1 and 279, and 5863 synaptic connections. The multiplex is undirected (with only one direction specified) and unweighted, stored as edges list in the file celegans_connectome_multiplex.edges <br> with format <br> layerID nodeID nodeID weight <br> (Note: weight is 1 for all edges) <br> The IDs of all layers are stored in <br> celegans_connectome_layers.txt <br> The IDs of nodes, together with their name can be found in the file <br> celegans_connectome_nodes.txt <br> <br> <br>
DOI: 10.6084/m9.figshare.28094903.v1
title: The Potential Distribution of <i>Termitomyces spp.</i> in Chinain China Based on MaxEnt Model Analysis

description: This dataset contains the distribution points of Termitomyces spp., Macrotermes barneyi Light, 1924, and Odontotermes formosanus (Shiraki, 1909) in China, provided in DOCX format. It includes key information such as species names, observation locations (latitude and longitude), country, and other relevant details.
DOI: 10.17605/osf.io/6dy4w
title: Individual differences in self-enhancement in terms of one’s personality traits: relationships with ruminations and regulatory focus – dataset and supplementary material

description: The project includes the dataset and supplementary material for the paper published in the Annals of Psychology, DOI: https://doi.org/10.18290/rpsych2024.0009.
DOI: 10.6084/m9.figshare.21393313.v1
title: Speech Therapy and Psychoanalysis: a case study with children with oral language delay

description: ABSTRACT The present research aims to study the effects of interdisciplinary interventions of Speech Therapy and Psychoanalysis in children with language delay. This is a comparative case study between two groups with quantitative and qualitative analysis, with four children, through the application of the Protocol of Behavioral Observation Protocol pre and post intervention, interviews with parents, records of children's filming during playing and interdisciplinary dialogues among the professionals. The pre-intervention evaluations showed that underage children obtained similarity in aspects that related to communicative skills and functions, cognitive development and toy level. Both groups presented difficulties regarding the alternation of turns. The assessments of older children, in the pre-intervention phase, also indicated similarities in the results. One subject presented a greater difficulty when waiting for his turn in dialogic activity. The results post-interdisciplinary intervention showed a superior improvement compared to the two cases followed only by the speech therapist. The interdisciplinary dialogue made it possible to effectively evolve in the cases of group 2. A psychoanalytic look over the cases that received only speech therapy intervention would allow intervention along with parents, children and school.
DOI: 10.6084/m9.figshare.28919033.v1
title: Energy Innovation Opportunities in High Energy Consuming Sectors in South Africa SAIIE.pdf

description: This paper investigates the innovation potential within South Africa’s most energy-intensive sectors-namely mining, manufacturing, and transportation-amid an ongoing national energy crisis. It offers a systems-oriented analysis to identify practical, scalable strategies for industrial energy innovation aimed at reducing dependence on conventional power sources. Drawing from literature and real-world industrial contexts, the study proposes policy, technological, and operational pathways to build energy resilience, improve efficiency, and promote sustainable industrial development. The findings contribute to the broader discourse on engineering solutions for Africa's energy future.
DOI: 10.6084/m9.figshare.29123102.v1
title: Rapid shallowing can trigger dramatic ecological changes and challenges within and beyond arid, nutrient-rich lakes

description: Data used for the "Rapid shallowing can trigger dramatic ecological changes and challenges within and beyond arid, nutrient-rich lakes" manuscript.In addition to data generated from this study,Fig. 1 data modified after Hung, C., Diamond, C., Sinclair, R., Lee, I., Stenstrom, M., Freilich, M. A., Montgomery, Q., Marquez, C. & Lyons, T. Nutrient loading as a key cause of short- and long-term anthropogenic ecological degradation of the Salton Sea. <i>Sci. Rep.</i> <b>14</b>, 31247 (2024) and Sherwood, J. E., Stagnitti, F., Kokkinn, M. J. & Williams, W. D. Dissolved oxygen concentrations in hypersaline waters. <i>Limnol. Oceanogr.</i> <b>36</b>, 235–250 (1991).<br>Fig. 2 and 5 data were adapted from Schroeder, Roy A., William H. Orem, and Yousif K. Kharaka. "Chemical evolution of the Salton Sea, California: nutrient and selenium dynamics." <i>The Salton Sea: Proceedings of the Salton Sea Symposium, held in Desert Hot Springs, California, 13–14 January 2000</i>. Springer Netherlands, 2002. and Reese, Brandi Kiel, Michael A. Anderson, and Christopher Amrhein. "Hydrogen sulfide production and volatilization in a polymictic eutrophic saline lake, Salton Sea, California." <i>Science of the total environment</i> 406.1-2 (2008): 205-218.Fig. 4 data was adapted from Ma, Jinge, et al. "Spatiotemporal pattern of gypsum blooms in the Salton Sea, California, during 2000-2018." <i>International Journal of Applied Earth Observation and Geoinformation</i> 89 (2020): 102090.
DOI: 10.6084/m9.figshare.5326870.v2
title: GCMP Australia sequence data, OTU tables, and metadata

description: Raw fastq data, OTU tables, and associated files from the Global Coral Microbiome Project Australia analysis.
DOI: 10.17632/hbyb5fbrgc
title: phaseOutTariffsPhaseInTrade_BesedesKohlLake

description: Replication files for: Besedes, Kohl & Lake (2020), "Phase Out Tariffs, Phase In Trade?", Journal of International Economics
DOI: 10.17632/zds2pk8ngp
title: Thermocline dynamics in the northwestern tropical Pacific over the past 700 kyr

description: The data include the stable oxygen isotope ratios and Mg/Ca of P. obliquiloculata from Core MD06-3047B, and the continental-ice-volume-corrected oxygen isotopic composition of thermocline water.
DOI: 10.6084/m9.figshare.1233912.v1
title: Open Science Peer Review Oath

description: The oath is a simple checklist to use when reviewing or considering a review request. We recommend that reviewers add a link to this oath at the top of each review as they begin, in order to provide an aide memoire to open review practice, and to inform the authors and potential publishers of the work of their intentions.
DOI: 10.17632/jcdxmvj76k
title: PREDICTIVE PATH MODELLING FOR UNTARGETED RIVER MONITORING source code and demonstration

description: Source code for: 'Monitoring pollution pathways in river water by predictive path modelling using untargeted GC-MS measurements'. Demonstration of the Process PLS analysis on chemical concentrations previously extracted from GC-MS measurements performed in 9 sampling sites along the river Rhine. 
The raw GC-MS data were provided by RIWA-Rijn and Rijkswaterstaat.


For the original Process PLS code and demonstration, please see:
van Kollenburg, Geert; Offermans, Tim; Jansen, Jeroen; Bouman, Roel; Postma, Geert (2022), “Data, software and scripts related to the Process PLS methodology manuscript”, Mendeley Data, V6, doi: 10.17632/9x9h7fr4kn.6
DOI: 10.6084/m9.figshare.13625606.v2
title: SARS-CoV-2 viral loads - French Covid19 cohort

description: Dataset from French Covid Cohort<br>
DOI: 10.17632/h433nps6nb
title: Impacto del uso compulsivo de las redes sociales sobre la ansiedad y la depresión y la relación entre las tres variables: Un análisis intergeneracional

description: Base de datos de una investigación relativa al impacto del uso compulsivo de las redes sociales sobre la ansiedad, la depresión, edad, edad de inicio en el uso de las redes sociales y la relación entre estas variables: Un análisis intergeneracional
DOI: 10.6084/m9.figshare.16743790.v1
title: Oat

description: A flat csv file contaning all data for the labeled species, at the resolution of site-variety-year combinations. Wheat is split into three files as there are too many records. Barley is excluded for ethical reasons, available on request.
DOI: 10.17632/8ghybjgpr7
title: Data for: Tourism and Inequality: A Relook on the Kuznets Curve

description: Data sets form World Development Indicators, World Bank, to explain how inequality is impacted by tourism receipts. Data on inequality compiled form SWID data base
DOI: 10.6084/m9.figshare.21517941.v2
title: 漢詩の自動生成の評価システム.txt

description: 漢詩の自動生成の評価システム
DOI: 10.6084/m9.figshare.27643182.v7
title: Multivariate Time Series Anomaly Detection Using Directed Hypergraph Neural Networks

description: Multivariate time series anomaly detection is a challenging problem because there can be a number of complex relationships between variables in multivariate time series. Although graph neural networks have been shown to be effective in capturing variable-variable relationships (i.e., relationships between two variables), they are hard to capture variable-group relationships (i.e., relationships between variables and groups of variables). To overcome this limitation, we propose a novel method called DHG-AD for multivariate time series anomaly detection. DHG-AD employs directed hypergraphs to model variable-group relationships within multivariate time series. For each time window, DHG-AD constructs two different directed hypergraphs to represent relationships between variables and groups of positively and negatively correlated variables, enabling the model to capture both types of relationships effectively. The directed hypergraph neural networks learn node representations from these hypergraphs, allowing comprehensive multivariate interaction modeling for anomaly detection. We show through experiments using various evaluation metrics that our proposed method achieves the best scores among the compared methods on two real-world datasets.
DOI: 10.6084/m9.figshare.28911338.v1
title: Probing Molecular Mechanisms of Emulsifier-Modulated Lipid Crystallization via Ultrasonic Phase Velocity

description: Lipid crystallization critically influences food quality, yet its molecular mechanisms remain poorly understood. This study employs ultrasonic phase velocity, integrated with differential scanning calorimetry (DSC) and small-angle X-ray scattering (SAXS), to elucidate sucrose fatty acid ester (SFE) modulation of hydrogenated coconut oil (HCO) crystallization. Compressibility, not density, dominates acoustic responses during phase transitions, with compressibility changes 2.3 times greater than density changes.
DOI: 10.6084/m9.figshare.3528368.v1
title: Data Paper. Data Paper

description: File List arcexport.zip -- Arc coverages in ArcExport format. Contains a series of subdirectories with files for each year that the quadrat was mapped. allrecords.csv -- 163,401 records, ASCII text, comma separated. No compression scheme was used. quadrat_info.csv -- 64 records, ASCII text, comma separated. No compression scheme was used. quadrat_inventory.csv -- 43 records, ASCII text, comma separated. No compression scheme was used. species_list.csv -- 152 records, ASCII text, comma separated. No compression scheme was used. monthly_temp.csv -- 112 records, ASCII text, comma separated. No compression scheme was used. monthly_ppt.csv -- 112 records, ASCII text, comma separated. No compression scheme was used. Description Demographic data will play a central role in testing current theories in plant ecology and forecasting the effects of global change. However, long-term data on vital rates are very limited, especially for species in herbaceous plant communities. Here we present a data set that has great potential to increase our understanding of plant demographic processes. Every year from 1932 to 1972, researchers in Hays, Kansas (USA), mapped all individual plants in a series of 1-m<sup>2</sup> quadrats in a mixed grass prairie. The rare combination of temporal extent and fine spatial resolution makes it possible to follow individual herbaceous plants (or genets) through time and to answer questions such as: How does individual survival and recruitment vary with precipitation and temperature? How are these relationships modified by interactions with neighboring conspecifics and heterospecifics? The data set includes the digitized maps in Arc Export format, a tabular, nonspatial version of the entire data set, descriptive information about each quadrat including its sampling schedule, a species list containing information on plant functional types, and monthly climate data. <i>Key words: climate; competition; demography; Geographic Information System; grassland, plant community</i>.
DOI: 10.15468/dl.nzzbdw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 1.8496,17.9648 1.8496,17.9648 -7.1504,26.9648 -7.1504,26.9648 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013405-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.24167244.v2
title: CP5CSTLSS_paper_data_and_CSSC_algorithm

description: Entire study dataset and table needed for comparative performance calculation for study "<i>Comparative performance of five cognitive screening tests in a large sample of seniors</i>", J. Dreo et al., 2024
DOI: 10.6084/m9.figshare.24586143.v1
title: Biogeography_analyses

description: To investigate the factors that may have influenced the distribution of <i>Ocymyrmex</i> species in southern Africa, we inferred their biogeographic histories using the R package BioGeoBEARS (BioGeography with Bayesian (and likelihood) Evolutionary Analysis in R Scripts) (Matzke, 2018). This likelihood-based model is designed to perform inferences of biogeographical histories on phylogenies and to compare different models of range evolution (Matzke, 2013a). The following biogeographical models were tested against our data to estimate the ancestral area of <i>Ocymyrmex</i> species: a Dispersal-Extinction-Cladogenesis (DEC) model, which allows the geographic range to change across a phylogeny through several events (Ree, 2005; Ree and Smith, 2008); a likelihood version of the Dispersal-Vicariance model (DIVALIKE) (Ronquist, 1997); and a likelihood version of the Bayesian Analysis of Biogeography (BAYAREA-LIKE), which is a Bayesian model that samples geographical history along phylogenetic branches, together with sampling parameter values (Landis et al., 2013). These models have free parameters specifying the rate of dispersal (<i>d</i> = range expansion) and extinction (<i>e</i> = range of contraction)<i> </i>along the phylogeny branches. At cladogenesis events, DEC assumes that one daughter lineage will always inherit the ancestral range if the ancestor lives in a single area; if the ancestor is widespread, one daughter lineage will live in a subset of that area, or one area will split off by vicariance. By contrast, DIVA only allows vicariance. BayArea assumes that no range evolution occurs at cladogenesis, and therefore the ancestral range is copied by both daughters (Matzke, 2013b). A founder event speciation model (+j) was also tested in combination with each base model.BioGeoBears requires a time calibrated tree and geographic distribution units as input files. <i>Ocymyrmex </i>distribution records were extracted from Iziko Museum’s Specify6 database (Specify version 6.7.01; Specify Collections Consortium | Software for Biological Collections and Samples). Given the tight habitat affinity of <i>Ocymyrmex</i>, species occurrences were assigned and coded according to the biomes defined by Dinerstein et al. (2017) (Appendix B: Table B2). The following biome regions were designated and used as biogeographical units: Tropical & subtropical moist broadleaf forests; Tropical & subtropical grasslands, savannas & shrublands; Flooded grasslands & savannas; Montane grasslands & shrublands; Mediterranean forests, woodlands & scrub; and Deserts & xeric shrublands. The dated phylogeny produced by MCMCTREE was pruned to exclude outgroups and was used as an input file. The Akaike information criterion (AIC) was used to select the best-fitting model. The maximum number of areas any species may occupy was set to five, as the <i>Ocymyrmex </i>species with the largest distribution range, <i>O. flaviventris</i>, can be found in five biomes. We followed guidelines in http://phylo.wikidot.com/biogeobears.
DOI: 10.6084/m9.figshare.12526256.v1
title: JVASP-21949 to JVASP-22977

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.26360050.v1
title: Spatial analyses

description: R script to clean raw GBIF records, perform Getis-Ord Gi* analysis, and create maps. The vector shapefile including the number total clean GBIF records per one-degree squared grid cell is also included here.
DOI: 10.6084/m9.figshare.27143571.v3
title: Chrysiptera cyanea genome annotation, transcriptome, proteome, and script for manuscript figure production

description: Chrysiptera cyanea is among the most common coral reef fish in shallow coastal zones around the main island of Okinawa. Our team is working to develop this fish as a model organism for environmental monitoring purposes. Generating a genome allowed to investigate biomolecular aspects (notably using RNAseq) of the impact of environmental factors on Chrysiptera cyanea.On NCBI:- Raw genomic reads can be found on NCBI under the BioProject PRJNA1167451: m64150e_221129_182410.hifi_reads.fastq.gz and m64150e_221201_052041.hifi_reads.fastq.gz- Biosample is SAMN44005798: Sesoko_Male1_2022_Liver_for_DNA.- The assembly presented in the manuscript is C.cyanea_contigs.fasta.Genome annotation was notably performed using organ-specific transcriptomic reads from the same individual (Sesoko Male 1): - Eye1_S45_R1_001.fastq.gz and Eye1_S45_R2_001.fastq.gz (Accession number: SRR30849507)- Gill1_S47_R1_001.fastq.gz and Gill1_S47_R2_001.fastq.gz (Accession number: SRR30849506)- Liver1_S44_R1_001.fastq.gz and Liver1_S44_R2_001.fastq.gz (Accession number: SRR30849505)- Muscle1_S46_R1_001.fastq.gz and Muscle1_S46_R2_001.fastq.gz (Accession number: SRR30849504)- Sesoko-B1_S13_R1_001.fastq.gz and Sesoko-B1_S13_R2_001.fastq.gz [The brain from a different fish (Sesoko Male B1) collected at the same site on the same day also used for the annotation] (Accession number: SRR30849503)<br>On FigShare:- C.cyanea_genomeannotation.gff3 : genome annotation - C.cyanea_Final_Codingseq.fasta : coding sequence - C.cyanea_proteome.fasta : proteome - C.cyanea_blastannotation.csv : functional annotation of the coding sequence- All BUSCO files for assemblies performed with various options of Flye and the Improved Phased Assembler can also be found on FigShare (short summary, full table, and missing BUSCO list for 9 different assembly options). The assembly that was used for the final genome is the Improved Phased Assembler, no phase, parental alleles (nophase_p)- Delta files obtained from nucmer aligning the genome assembly to reference Pomacentrid genomes (Amphiprion clarkii, A. ocellaris, A. percula, Acanthochromis polyacanthus, Dascyllus trimaculatus) as well as the number of bases aligning between the C. cyanea contigs and reference genomes (n_bases_Ccy_to_X_nucmer.csv) by filtering to only keep alignments longer than 10,000 bases- The R (v4.3.3) script using the aforementioned files to produce Figure 2 and 3 from the manuscript: dotplot_and_nb_bases_calculation_Rscript.txt
DOI: 10.6084/m9.figshare.27958413.v2
title: Supplementary data associated with Brigham et al. "Discovery and biosynthesis of biffamycin – a novel glycotetrapeptide antibiotic"

description: This entry contains underpinning data from the supplementary information section of Brigham et al. "Discovery and biosynthesis of biffamycin – a novel glycotetrapeptide antibiotic". Files include: pBiff.gbk, protein sequences their alignment for epimerise domains and α-ketoglutarate-dependent hydroxylases, and a phylogenetic tree of α-ketoglutarate-dependent hydroxylases.
DOI: 10.25451/flinders.20057219.v1
title: Visual acuity and reading performance in children with a vision impairment

description: Reading performance measures and distance visual acuity and contrast sensitivity measures in children with a vision impairment and the underlying pathology. Reading speed Critical Print Size Binocular Distance Visual Acuity
DOI: 10.6084/m9.figshare.14451681.v1
title: Table 2 Differences between assurance fund and title insurance

description: Differences between the assurance fund and title insurance.
DOI: 10.6084/m9.figshare.17704223.v1
title: Mixed_system15K

description: phonon dispersion (vibration frequency datasets)<br>
DOI: 10.6084/m9.figshare.20039144.v1
title: Dataset 1

description: Types of environmental documents held by participant hotels and pumping test status.
DOI: 10.6084/m9.figshare.23293043.v1
title: Lemur Post Conflict & Reconciliation

description: This .zip folder includes the code and data necessary to reproduce the analyses in "Patterns of conflict and post-conflict affiliation in <i>Propithecus diadema</i> and <i>Eulemur fulvus</i>" It includes conflict data, dominance data, a phylogenetic tree to reproduce figure 1, and the corresponding R code.
DOI: 10.6084/m9.figshare.27189840.v1
title: Low-Resource MobileBERT Emotion Recognition Code with Datasets

description: MobileBERT Emotion Recognition Code with Datasets
DOI: 10.6084/m9.figshare.27919209.v1
title: MSLesSeg: baseline and benchmarking of a new Multiple Sclerosis Lesion Segmentation dataset

description: MSLesSeg is a publicly accessible MRI dataset aimed at advancing research in Multiple Sclerosis (MS) lesion segmentation. It includes 115 MRI scans from 75 patients, featuring T1, T2, and FLAIR sequences. The dataset is enriched with supplementary clinical data gathered from multiple sources. Expert-validated annotations provide high-quality lesion segmentation labels, offering a reliable, human-labeled benchmark for evaluating segmentation algorithms.