cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5t727p8v
title: MassIVE Reanalysis RMSV000000355.5803 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DNAL4 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727p9b
title: MassIVE Reanalysis RMSV000000355.5982 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CENPH [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1w094ch
title: TBEP Up in the Air and Down in the Water_Nitrogen Data, Tampa Bay Watershed Florida 2021 to 2022

description: Data is being collected on nitrogen forms and concentrations in atmospheric wet deposition, stormwater runoff and throughfall from the urban tree canopy. Sampling sites are Pinellas and Hillsborough Counties Florida. Data includes nitrate stable isotope analysis of wet deposition and stormwater, as well as cell count data from a bioassay of wet deposition, stormwater, and throughfall with Karenia brevis.
DOI: 10.25345/c5t727q0f
title: MassIVE Reanalysis RMSV000000355.6190 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RGS5 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q1x
title: MassIVE Reanalysis RMSV000000355.6577 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM71F1 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1w66j7m
title: The effects of varying temperature on the germination of California natives and invasive plant species

description: 4 different annual plant species found within the California desert were germinated at varying temperatures to determine the overall effect on both successful germination and overall plant mass. 3 species of native plants including Salvia columbarie, Layia platyglossa, and Phacelia tanacetifolia were grown and 1 exotic plant species Bromus rubens. 3 Varying temperature intensities were used including low, medium, and high temperatures. Each species was grown for a total of 6 weeks independently under each treatment. Once the germination trials were completed, individuals were removed from their pots and weighed to determine the overall dry mass.
DOI: 10.25345/c5t727q2d
title: MassIVE Reanalysis RMSV000000355.6964 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, BPI [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q3w
title: MassIVE Reanalysis RMSV000000355.7358 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ATF6 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q4c
title: MassIVE Reanalysis RMSV000000355.7743 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PHF1 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1wh2nf4
title: 3 Year Telemetry Dataset

description: The dataset provided contains the information used to determine the overall shrub density around G. sila relocations from a 3 year telemetry dataset. Data including; location above or below ground, shrub density, cover, NDVI and mesohabitat are included. All sensitive data including coordinates for the locations of this species has been removed.
DOI: 10.25345/c5t727q5v
title: MassIVE Reanalysis RMSV000000355.7952 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SOX14 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q6b
title: MassIVE Reanalysis RMSV000000355.8130 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LPPR4 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1ww7g38
title: Effects of mustard invasions on soil microbial abundances and fungal assemblages at the Robert J. Bernard Field Station, Bonelli Park, and the Voorhis Reserve

description: Data is associated with a manuscript titled "Effects of mustard invasions on soil microbial abundances and fungal assemblages in southern California" set to be published in the journal "Diversity" in January 2023.Briefly, this project aimed to better understand how mustard invasions, primarily the short-pod mustard, Hirschfeldia incana, impact soil microbial assemblages. We examined microbial abundance and assemblages from intact CSS and adjacent mustard dominated soils at three sites. We also explored if germination rates for various plant species differed between CSS and mustard soils.Data sets provided her provide the ecological data associated from this project that cannot be directly extracted from the manuscript. Genetic ASV data can be obtained from GenBank (BioProject PRJNA891695).
DOI: 10.25345/c5t727q7t
title: MassIVE Reanalysis RMSV000000355.8339 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, H3F3B [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q89
title: MassIVE Reanalysis RMSV000000355.8726 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SLC5A7 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727q9s
title: MassIVE Reanalysis RMSV000000678.7 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083043 CPTAC, TCGA Cancer Proteome Study of Breast Tissue [Notes: Proteome, Mixture: 33] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1x63kc0
title: The effect of shrub density on animal abundance in Panoche, Southern California

description: The following data was collected during the 2019 field season in the Carrizo Plain National Monument in Southern California, United States. 16 Cameras were deployed at varying shrub densities ranging from no shrub individuals to a high number of individuals (11-12 shrubs). These cameras were deployed in 1 of our major site. Cameras were not rotated and were deployed for a total of 27 continuous days. All animals in each photo were recorded as well as their behaviour, time of photo, and local density.
DOI: 10.25345/c5t727r0w
title: MassIVE Reanalysis RMSV000000379.9 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088405 Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimers Disease Progression - high/low molecular weight tau [Cohort: Alzheimers_First_Tau] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727r1c
title: MassIVE Reanalysis RMSV000000675.99 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000090571 Chemical phosphoproteomics reveals kinase network topologies associated to genotypes and phenotypes of cancer cells [Cohort: HL60_GF109203X] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727r2v
title: MassIVE Reanalysis RMSV000000400.14 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080749/PXD003187 [4 out of 8] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727r3b
title: MassIVE Reanalysis RMSV000000619.24 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088554/PXD026440 A Comparative Study of Human Testes and Epididymis through the Proteomics and RNA-seq Methods [BioReplicate: Epididymis_Rep2_SolutionB] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1xs5svc
title: Gill net survey of fishes of Oneida Lake, New York, 1957 to present

description: This data package contains tables summarizing data collected during standardized gill net sampling conducted since 1957 and is part of the collection "Cornell Oneida Lake Data". The Cornell Biological Field Station (CBFS) serves as a primary field site for aquatic research at Cornell University (more information can be found at http://cbfs.dnr.cornell.edu/index.html) and is part of the Department of Natural Resources, College of Agriculture and Life Sciences. The centerpiece of the station's research program is a 60-year database on the food web of Oneida Lake, New York, that has been collected with support from the Cornell University Brown Endowment and from the New York State Department of Environmental Conservation. The data are collected by personnel from the Cornell Biological Field Station and include limnology, benthos, zooplankton, phytoplankton, and fish survey data, primarily from Oneida Lake and spanning 1957 to present. The three primary tables presented here summarize abundances of different fish species for each sample date and by year, and yearly totals by age class for yellow perch, walleye, white perch, and smallmouth bass. Auxiliary tables contain latitudes and longitudes of standard sampling sites and explanations of species names used in the primary tables.
DOI: 10.25345/c5t727r4t
title: MassIVE Reanalysis RMSV000000675.176 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000090571 Chemical phosphoproteomics reveals kinase network topologies associated to genotypes and phenotypes of cancer cells [Cohort: MCF7_TBCA] [launched by 31fc25a7c92347c2b9f58f8f26be259f]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t727r59
title: MassIVE Reanalysis RMSV000000355.8901 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RP9 [launched by dab8bba1f45f4e4082f7fa74fbbf30fb]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5063/f1z036mt
title: Designcraft for Experiments: Solo Survey

description: A set of remote exercises exploring experimental design for the life sciences. A total of three independent labs were done to focus on different design principles, sampling techniques, and taxa. Exercises are described in full in this open access manual entitled Designcraft for experiments. Data were collected by students in a third-year biology course offering at York University in Toronto, ON, Canada. Students collected the data and published individual datasets to figshare with a CCBY4.0 licensing. Data were then compiled for each lab including balcony birdwatching, backyard bioblitz, and solo surveys. The provenance of each independent observation in the compiled data was recognized by attribution to the initials of the primary data author including citation via DOI and link to figshare.AttributionCJL designed the experiments.Students in course offering collected, innovated, and published individual, primary datasets.MZ and CJL reviewed the compiled data.MetadataRecord-levelyear is the calendar year of work not termexperiment describes the three experimental options in designcraft booksource is either full experiment or pilot experimentrep is the replicate per experimental setlocation is the site name locallyhabitat is the ecological classificationdate is the calendar date for each observation
DOI: 10.25345/c5tb0z01g
title: MassIVE MSV000089527 - GNPS_Extraction_Comparison_Ts_S
title: Extraction Comparison of Tissue Lyser and Sonication for P27 and P09
DOI: 10.5063/f1z31x32
title: Digitisation of Weather Records of Seungjeongwon Ilgi: A Historical Weather Dynamics Dataset of the Korean Peninsula (1623-1910)

description: This study has exploited the daily weather records of Seungjeongwon Ilgi from the NIKH database. Seungjeongwon Ilgi is a daily record of the Seungjeongwon, the Royal Secretariat of the Joseon Dynasty of Korea. These diaries span from 1623 to 1910 and generally involve daily weather records in the entry header. Their observational site would be located in Seoul (N37°35′, E126°59′). We have exploited the weather records from the NIKH database and classified the daily weather using text mining method. We have also converted the report dates from the traditional lunisolar calendar to the Gregorian calendar, to better contextualise our data into the contemporary daily measurements.We provide different formats (csv, xlsx, json) to facilitate the usage of data. The main contents of data are listed as below.- ID: The unique identifier of a specific record in the metadata, which can also serve as the identifier to merge with external data in the NIKH digital database.- Traditional calendar: The original lunar dates in the NIKH digital database, which are listed in data format "YYYY-MM-DD". More specifically, "L0" implies the leap year and "L1" implies the common year.- Leap: The identifier of a leap year.- Gregorian calendar: The Gregorian calendar date that converted by the traditional calendar date.- Weather Text: The text that describe the weather conditions. Specifically, multiple weather descriptions of the same day have been put together.- Flag: The computed value that indicates different combinations of weather conditions.
DOI: 10.25345/c5tb0z02z
title: MassIVE MSV000089735 - Chronic Carnitine Urine Analysis for Chagas Disease Dual Treatment - Untargeted
title: Urine samples collected from male mice before, during, and after a 6-week treatment program (benznidazole, L-carnitine) for chronic chagas disease. Study groups include uninfected, carnitine, benznidazole, and vehicle. Metabolites extracted with methanol. Timepoints = T0, T2, T5, and T6(partial), where T = #weeks.