cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20038217.v1
title: Factor analysis applied to the G+GE matrix via REML/BLUP for multi-environment data

description: Abstract The genotype x environment interaction is frequently observed in many crops and studies on environmental stratification and genotype adaptability have been proposed to understand it. The aim of this study was to carry out factor analysis in data from multi-environment experiments by the mixed model approach (REML/BLUP). Instead of adjusted phenotypic means, a matrix containing the genotypic effects added to the effects of the genotype x environment interaction (G+GE) was used, predicted via REML/BLUP in joint analysis (designated as R-FGGE). In the study, data from 36 common bean lines evaluated in 15 environments were used. By this proposal, 46.7% of the environments were gathered in two groups, one with four and the other with three environments. The R-FGGE has the same characteristics as the previous proposals, that is, ease of identification of mega-environments and genotypes with broad adaptability, along with the advantages associated with the mixed model methodology.
DOI: 10.6084/m9.figshare.20038217
title: Factor analysis applied to the G+GE matrix via REML/BLUP for multi-environment data

description: Abstract The genotype x environment interaction is frequently observed in many crops and studies on environmental stratification and genotype adaptability have been proposed to understand it. The aim of this study was to carry out factor analysis in data from multi-environment experiments by the mixed model approach (REML/BLUP). Instead of adjusted phenotypic means, a matrix containing the genotypic effects added to the effects of the genotype x environment interaction (G+GE) was used, predicted via REML/BLUP in joint analysis (designated as R-FGGE). In the study, data from 36 common bean lines evaluated in 15 environments were used. By this proposal, 46.7% of the environments were gathered in two groups, one with four and the other with three environments. The R-FGGE has the same characteristics as the previous proposals, that is, ease of identification of mega-environments and genotypes with broad adaptability, along with the advantages associated with the mixed model methodology.
DOI: 10.6084/m9.figshare.20038219
title: Pathogenic variability of Moniliophthora perniciosa in three agroecological zones of the cacao region of Bahia, Brazil

description: Abstract Resistant cacao genotypes are the best measure to control the Witches' broom disease of cacao. To ensure efficiency, the pathogen variability in the cacao region of Bahia must be investigated. The pathogenic variability of Moniliophthora perniciosa inocula from nine municipalities was analyzed: Ilhéus, Floresta Azul and Jussari (agroecological zone Almada); Ipiaú, Itagibá and Jitaúna (agroecological zone Ipiaú), Camacan, Santa Luzia and Pau Brasil (agroecological zone Camacan), by inoculating progenies of Sca 6, ICS 1 and SIC 23 seedlings with 2 x 105 basidiospore.mL-1 of inocula and inoculum mixtures per agroecological zone, in a factorial 3 x 13 design, with 4 replications of 28 plants, in two seasons. Symptoms were assessed 60 days after inoculation. Pathogenic variability of inoculum in relation to the progeny performance was found; Ipiaú was the most aggressive and progeny ICS 1 the most susceptible. The mixtures of the agroecological zones Almada and Ipiaú were contrasting.
DOI: 10.6084/m9.figshare.20038219.v1
title: Pathogenic variability of Moniliophthora perniciosa in three agroecological zones of the cacao region of Bahia, Brazil

description: Abstract Resistant cacao genotypes are the best measure to control the Witches' broom disease of cacao. To ensure efficiency, the pathogen variability in the cacao region of Bahia must be investigated. The pathogenic variability of Moniliophthora perniciosa inocula from nine municipalities was analyzed: Ilhéus, Floresta Azul and Jussari (agroecological zone Almada); Ipiaú, Itagibá and Jitaúna (agroecological zone Ipiaú), Camacan, Santa Luzia and Pau Brasil (agroecological zone Camacan), by inoculating progenies of Sca 6, ICS 1 and SIC 23 seedlings with 2 x 105 basidiospore.mL-1 of inocula and inoculum mixtures per agroecological zone, in a factorial 3 x 13 design, with 4 replications of 28 plants, in two seasons. Symptoms were assessed 60 days after inoculation. Pathogenic variability of inoculum in relation to the progeny performance was found; Ipiaú was the most aggressive and progeny ICS 1 the most susceptible. The mixtures of the agroecological zones Almada and Ipiaú were contrasting.
DOI: 10.6084/m9.figshare.20038223.v1
title: Molecular characterization of 'sweet' cassavas (Manihot esculenta) from a germplasm bank in Brazilian Eastern Amazonia

description: Abstract Genetic variability of a set of 81 accessions of 'sweet' cassavas (Manihot esculenta) collected mostly in the North region of Brazil was investigated with nine microsatellite loci. All loci were polymorphic, with mean of 6.33 alleles per locus. Analyses indicated that 35 multiloci profiles were represented by a single accession, and 46 showed non-unique profiles, represented by eleven genotypes. Forty-six different multiloci profiles were detected. Most of the putative duplicated accessions were collected in different locations. After the removal of putative duplicated genotypes, genetic parameters were estimated and expected heterozygosity was high (HE=0.73), indicating genetic variability. Structure analysis of this set of 'sweet' cassavas divided the 46 genotypes into two clusters (K=2), and a few genotypes had mixed ancestry. Results indicated the habit of exchange of materials among farmers of the North region of Brazil, and the genetic variability to be exploited in genetic breeding efforts.
DOI: 10.6084/m9.figshare.20038223
title: Molecular characterization of 'sweet' cassavas (Manihot esculenta) from a germplasm bank in Brazilian Eastern Amazonia

description: Abstract Genetic variability of a set of 81 accessions of 'sweet' cassavas (Manihot esculenta) collected mostly in the North region of Brazil was investigated with nine microsatellite loci. All loci were polymorphic, with mean of 6.33 alleles per locus. Analyses indicated that 35 multiloci profiles were represented by a single accession, and 46 showed non-unique profiles, represented by eleven genotypes. Forty-six different multiloci profiles were detected. Most of the putative duplicated accessions were collected in different locations. After the removal of putative duplicated genotypes, genetic parameters were estimated and expected heterozygosity was high (HE=0.73), indicating genetic variability. Structure analysis of this set of 'sweet' cassavas divided the 46 genotypes into two clusters (K=2), and a few genotypes had mixed ancestry. Results indicated the habit of exchange of materials among farmers of the North region of Brazil, and the genetic variability to be exploited in genetic breeding efforts.
DOI: 10.6084/m9.figshare.20038228
title: Coffea arabica clones resistant to coffee leaf miner

description: Abstract Brazilian arabica coffee production is based on a set of highly productive cultivars sexually propagated. All of them are susceptible to coffee leaf miner, Leucoptera coffeella, and most of them are also susceptible to coffee leaf rust, Hemileia vastatrix. Aiming to reduce the selection process of cultivars with multiple resistances to both biotic constraints, the Coffea arabica clones 760, 1059, 1064 and 1215 were evaluated under field conditions. The mean yield of four C. arabica clones was not statistically different from the experimental controls; however, the yield of clone 1059 was 21% higher than the control cultivar Obatã IAC 1669-20. Leaf miner resistance level in all the evaluated clones remained the same as the mother plant's. However, the same did not occur for resistance to H. vastatrix, due to the emergence of new pathogen races. In summary, it is potentially feasible the adoption of clone 1059 as a new clonal cultivar resistant to coffee leaf miner.
DOI: 10.6084/m9.figshare.20038228.v1
title: Coffea arabica clones resistant to coffee leaf miner

description: Abstract Brazilian arabica coffee production is based on a set of highly productive cultivars sexually propagated. All of them are susceptible to coffee leaf miner, Leucoptera coffeella, and most of them are also susceptible to coffee leaf rust, Hemileia vastatrix. Aiming to reduce the selection process of cultivars with multiple resistances to both biotic constraints, the Coffea arabica clones 760, 1059, 1064 and 1215 were evaluated under field conditions. The mean yield of four C. arabica clones was not statistically different from the experimental controls; however, the yield of clone 1059 was 21% higher than the control cultivar Obatã IAC 1669-20. Leaf miner resistance level in all the evaluated clones remained the same as the mother plant's. However, the same did not occur for resistance to H. vastatrix, due to the emergence of new pathogen races. In summary, it is potentially feasible the adoption of clone 1059 as a new clonal cultivar resistant to coffee leaf miner.
DOI: 10.6084/m9.figshare.20038229
title: Tetraploidization in citrus rootstocks: effect of genetic constitution and environment in chromosome duplication

description: Abstract The objective of this study was to identify polyploid plants from citrus rootstocks and to evaluate the influence of the genetic constitution and of the environment on the frequency of chromosome duplication. Populations obtained from rootstock seeds of Trifoliata [Poncirus trifoliate (L.) Raf], citrumelo 'Swingle' [C. paradise Macf. × P. trifoliate], citrange 'Troyer' [C. sinensis (L.) Osb. x P. trifoliate] and citranges Fepagro 'C13', 'C37' and 'C41' [C. sinensis (L.) Osb. cv. Pêra x P. trifoliata] were evaluated under field and greenhouse conditions. Flow cytometry analysis of 415 field plants and 435 greenhouse plants identified seven (1.69%) and 29 (6.67%) tetraploids, respectively. Differences in the number of tetraploid plants among genotypes and locations were observed in field progenies of 'C 37' (2.12%) and 'C 13' (2.04%) and in greenhouse progenies of 'C 13' (15.52%) and 'C 37' (6%). The frequency of autotetraploidization events in citrus rootstocks is common and appears to be associated to genetic constitution and environmental conditions.
DOI: 10.6084/m9.figshare.20038229.v1
title: Tetraploidization in citrus rootstocks: effect of genetic constitution and environment in chromosome duplication

description: Abstract The objective of this study was to identify polyploid plants from citrus rootstocks and to evaluate the influence of the genetic constitution and of the environment on the frequency of chromosome duplication. Populations obtained from rootstock seeds of Trifoliata [Poncirus trifoliate (L.) Raf], citrumelo 'Swingle' [C. paradise Macf. × P. trifoliate], citrange 'Troyer' [C. sinensis (L.) Osb. x P. trifoliate] and citranges Fepagro 'C13', 'C37' and 'C41' [C. sinensis (L.) Osb. cv. Pêra x P. trifoliata] were evaluated under field and greenhouse conditions. Flow cytometry analysis of 415 field plants and 435 greenhouse plants identified seven (1.69%) and 29 (6.67%) tetraploids, respectively. Differences in the number of tetraploid plants among genotypes and locations were observed in field progenies of 'C 37' (2.12%) and 'C 13' (2.04%) and in greenhouse progenies of 'C 13' (15.52%) and 'C 37' (6%). The frequency of autotetraploidization events in citrus rootstocks is common and appears to be associated to genetic constitution and environmental conditions.
DOI: 10.6084/m9.figshare.19924724.v1
title: C1LinearOscFading01.zip

description: Sample data from dumped oscillator (fast oscillations)
DOI: 10.6084/m9.figshare.20038232
title: Genetic resistance of maize inbred lines to anthracnose leaf blight

description: Abstract The objectives of this study were to evaluate the resistance of maize inbred lines to anthracnose leaf blight (Colletotrichum graminicola Ces.), and to estimate genetic parameters associated with resistance. Sixteen lines (S5) were evaluated for resistance to anthracnose leaf blight in three experiments, in a randomized block design with four replications. From three evaluations of severity, it was estimated the area under the disease progress curve (AUDPC), and the genetic parameters associated with resistance. Results showed the existence of genetic variability for resistance to anthracnose leaf blight in the set of studied lines. Five lines stood out for the high resistance pattern to anthracnose leaf blight, presenting the lowest AUDPC values in the three experiments, and thus were considered important sources of C. graminicola resistance genes. Estimates of genetic parameters indicated low participation of the environment and highlighted the possibility of genetic gains with artificial selection for resistance in this pathosystem.
DOI: 10.6084/m9.figshare.20038232.v1
title: Genetic resistance of maize inbred lines to anthracnose leaf blight

description: Abstract The objectives of this study were to evaluate the resistance of maize inbred lines to anthracnose leaf blight (Colletotrichum graminicola Ces.), and to estimate genetic parameters associated with resistance. Sixteen lines (S5) were evaluated for resistance to anthracnose leaf blight in three experiments, in a randomized block design with four replications. From three evaluations of severity, it was estimated the area under the disease progress curve (AUDPC), and the genetic parameters associated with resistance. Results showed the existence of genetic variability for resistance to anthracnose leaf blight in the set of studied lines. Five lines stood out for the high resistance pattern to anthracnose leaf blight, presenting the lowest AUDPC values in the three experiments, and thus were considered important sources of C. graminicola resistance genes. Estimates of genetic parameters indicated low participation of the environment and highlighted the possibility of genetic gains with artificial selection for resistance in this pathosystem.
DOI: 10.6084/m9.figshare.20038234
title: In vitro callus induction and micropropagation of Thymus persicus (Lamiaceae), an endangered medicinal plant

description: Abstract This is the first attempt towards an efficient regeneration protocol for an endangered and valuable medicinal plant, Thymus persicus using in vitro callus induction and indirect organogenesis. Callus induction was performed on MS medium supplemented with different concentrations of NAA and 2,4-D, alone or in combination with BAP and KN. Maximum callus induction (100%) was achieved from internode explants cultured on MS medium fortified with 2.0 mg L-1 NAA and 0.5 mg L-1 KN. The highest frequency of shoot multiplication (96%) was observed with 2.0 mg L-1 BAP+1.0 mg L-1 NAA. The maximum number of rootlets (16.6 ± 1.4) was induced on half-strength MS medium with 0.5 and 1.0 mg L-1 IBA. Rooted plantlets were then successfully grown and acclimatized in the greenhouse with a 70-85% survival rate. The benefits of the protocol described here include all-year-round application, germplasm conservation, suitability for commercial production and also for the biotechnological production of pentacyclic triterpenoids.
DOI: 10.6084/m9.figshare.20038237
title: Flowering traits in tetraploid Brachiaria ruziziensis breeding

description: Abstract Tetraploid Brachiaria ruziziensis genotypes which reproduce sexually are essential for the breeding of other species of the Brachiaria genus which reproduce by apomixis. Aiming at studying the available phenotypic and genetic variability in the breeding population of B. ruziziensis, it was estimated the parameters heritability and genetic and phenotypic correlations between the traits associated with flowering, and the traits responsible for forage yield and nutritional quality. Seventeen traits in 1180 individuals from 59 open pollinated families were studied, and the data were analyzed by mixed model methods. Individuals with sparse flowering presented higher breeding values for total dry matter, yield, and total number of panicles per plant than individuals with early or late flowering. Considering breeding population differences on flowering behavior, on individual narrow sense heritability and on genetic correlations between flowering, agronomic quality and nutritional quality traits have to be considered in intrapopulation breeding and in intrapopulational recurrent selection.
DOI: 10.6084/m9.figshare.20038237.v1
title: Flowering traits in tetraploid Brachiaria ruziziensis breeding

description: Abstract Tetraploid Brachiaria ruziziensis genotypes which reproduce sexually are essential for the breeding of other species of the Brachiaria genus which reproduce by apomixis. Aiming at studying the available phenotypic and genetic variability in the breeding population of B. ruziziensis, it was estimated the parameters heritability and genetic and phenotypic correlations between the traits associated with flowering, and the traits responsible for forage yield and nutritional quality. Seventeen traits in 1180 individuals from 59 open pollinated families were studied, and the data were analyzed by mixed model methods. Individuals with sparse flowering presented higher breeding values for total dry matter, yield, and total number of panicles per plant than individuals with early or late flowering. Considering breeding population differences on flowering behavior, on individual narrow sense heritability and on genetic correlations between flowering, agronomic quality and nutritional quality traits have to be considered in intrapopulation breeding and in intrapopulational recurrent selection.
DOI: 10.6084/m9.figshare.20038238
title: Large-scale, high-efficiency production of coffee somatic embryos

description: Abstract The study aims to compare the efficiency of previously used liquid media for coffee, evaluating NAA concentrations in liquid medium and proline in semi-solid medium in the regeneration of somatic embryos and asses concentrations of BA and IAA in the maturation of embryos in temporary immersion bioreactors. For the regeneration of globular embryos from embryogenic aggregates and calli, we tested five concentrations (0.00, 0.25, 0.50, 1.00 and 2.00 mg L-1) of NAA in liquid medium and five concentrations (0.0, 0.5, 1.0, 2.0 and 4.0 g L-1) of proline in semisolid medium. The multiplication of embryogenic aggregates was highest in culture medium MM, reaching a density 7.5 times greater than that of the initial density. NAA promoted a linear increase in embryo regeneration. The medium containing 2.0 mg L-1 BA and 0.0 mg L-1 IAA yielded the highest percentage of large cotyledonary embryos.
DOI: 10.6084/m9.figshare.20038238.v1
title: Large-scale, high-efficiency production of coffee somatic embryos

description: Abstract The study aims to compare the efficiency of previously used liquid media for coffee, evaluating NAA concentrations in liquid medium and proline in semi-solid medium in the regeneration of somatic embryos and asses concentrations of BA and IAA in the maturation of embryos in temporary immersion bioreactors. For the regeneration of globular embryos from embryogenic aggregates and calli, we tested five concentrations (0.00, 0.25, 0.50, 1.00 and 2.00 mg L-1) of NAA in liquid medium and five concentrations (0.0, 0.5, 1.0, 2.0 and 4.0 g L-1) of proline in semisolid medium. The multiplication of embryogenic aggregates was highest in culture medium MM, reaching a density 7.5 times greater than that of the initial density. NAA promoted a linear increase in embryo regeneration. The medium containing 2.0 mg L-1 BA and 0.0 mg L-1 IAA yielded the highest percentage of large cotyledonary embryos.
DOI: 10.6084/m9.figshare.20038241
title: Effect of recurrent selection on the variability of the UENF-14 popcorn population

description: Abstract This study aimed to evaluate the effect of recurrent selection on the genetic variability of UENF-14 population after six selections. Two hundred and ten half-sib families were evaluated in two environments in the state of Rio de Janeiro, using incomplete randomized blocks design with treatments arranged in replication within "Sets". There was significant effect for Families within the "Set" (F)/S, proving that there is enough genetic variability to be exploited in the popcorn breeding program of UENF. The significance for the source of variation Environment (E) shows that the environments were distinct enough to promote differences between the evaluated characteristics. It was found that for both characteristics of greatest interest, GY and PE, the magnitude of the additive variance remains with close values in advanced cycles of UENF-14 population, indicating that variability remains, with no evidence of decreases in advanced cycles. This is concluded by the longevity of UENF breeding program.
DOI: 10.6084/m9.figshare.20038241.v1
title: Effect of recurrent selection on the variability of the UENF-14 popcorn population

description: Abstract This study aimed to evaluate the effect of recurrent selection on the genetic variability of UENF-14 population after six selections. Two hundred and ten half-sib families were evaluated in two environments in the state of Rio de Janeiro, using incomplete randomized blocks design with treatments arranged in replication within "Sets". There was significant effect for Families within the "Set" (F)/S, proving that there is enough genetic variability to be exploited in the popcorn breeding program of UENF. The significance for the source of variation Environment (E) shows that the environments were distinct enough to promote differences between the evaluated characteristics. It was found that for both characteristics of greatest interest, GY and PE, the magnitude of the additive variance remains with close values in advanced cycles of UENF-14 population, indicating that variability remains, with no evidence of decreases in advanced cycles. This is concluded by the longevity of UENF breeding program.
DOI: 10.6084/m9.figshare.20038243.v1
title: Whisker-mediated transformation of peanut with chitinase gene enhances resistance to leaf spot disease

description: Abstract Peanut (Arachis hypogaea) is an important legume and oilseed crop, native to South America and grown in all tropical and temperate regions of the world. A simplified and rapid direct gene delivery system in peanut was developed by vortexing silicon carbide whiskers with callus and with plasmid harboring chitinase and hygromcin genes. The effects of callus age and whisker quantity on transformation efficiency were evaluated. Transformation efficiency (6.88%) was highest when 200 mg of whiskers were used with 5 µg plasmid for 2 g of 20-day-old callus. Hygromcin-resistant calli were regenerated to complete plants which produced seeds normally. Transgene insertion and number of transgene copieswere confirmed by PCR and southern blot analyses, respectively. Transgene expression was evaluated by a pathogenecity test and RT-PCR analysis. In transgenic events, the resistance level to leaf spot disease was far higher than in control plants.