cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1175238.10fu
title: SH1175238.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175239.10fu
title: SH1175239.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175241.10fu
title: SH1175241.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175243.10fu
title: SH1175243.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175245.10fu
title: SH1175245.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175247.10fu
title: SH1175247.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175248.10fu
title: SH1175248.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175249.10fu
title: SH1175249.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175252.10fu
title: SH1175252.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.guxwzp
title: Occurrence Download

description: A dataset containing 83396 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicotiana L."
 ]
}

 The dataset includes 83396 records from 666 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071575-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029391
title: Cuneiform Tablet 1913.14.1517, Spurlock 1913.14.1517

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1517; CDLI P421369 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Pale Orange Yellow (10YR 8/3) ❧ [Physical Object Note:] 5.7 x 4.9 x 2.3 cm (60 g)
DOI: 10.15468/dl.5av2b2
title: Occurrence Download

description: A dataset containing 835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.98047 -40.42969,19.51172 -40.42969,19.51172 37.96875,-124.98047 37.96875,-124.98047 -40.42969))",
 "TaxonKey is Lutjanus guttatus (Steindachner, 1869)"
 ]
}

 The dataset includes 835 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005081-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc4esp
title: Occurrence Download

description: A dataset containing 337862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Year 1910-2020",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 337862 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016991-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzzd6s
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-88.0681723000000005 30.6614208999999995, -88.0681723000000005 30.6623296100000005, -88.0681723000000005 30.6636926800000005, -88.0681723000000005 30.6649042999999999, -88.0681723000000005 30.6662673599999991, -88.0681723000000005 30.6674032499999996, -88.0681723000000005 30.6689934999999991, -88.0665037200000000 30.6689934999999991, -88.0649108700000056 30.6689934999999991, -88.0635455700000023 30.6689934999999991, -88.0614217800000034 30.6689934999999991, -88.0592221299999949 30.6689934999999991, -88.0578568300000057 30.6689934999999991, -88.0561124000000035 30.6689934999999991, -88.0561124000000035 30.6670246199999994, -88.0561124000000035 30.6658887299999989, -88.0561124000000035 30.6643742099999983, -88.0561124000000035 30.6630868700000008, -88.0561124000000035 30.6614208999999995, -88.0578568300000057 30.6614208999999995, -88.0592221299999949 30.6614208999999995, -88.0603598799999929 30.6614208999999995, -88.0616493299999945 30.6614208999999995, -88.0627870699999988 30.6614208999999995, -88.0644557699999950 30.6614208999999995, -88.0667312700000053 30.6614208999999995, -88.0681723000000005 30.6614208999999995))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097098-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029510
title: Cuneiform Tablet 1913.14.1517, Spurlock 1913.14.1517

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1517; CDLI P421369 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Pale Orange Yellow (10YR 8/3) ❧ [Physical Object Note:] 5.7 x 4.9 x 2.3 cm (60 g)
DOI: 10.15468/dl.7cpd5h
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "TaxonKey is Sternidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 1 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023128-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjhwqk
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terrazoanthus onoi Reimer & Fujii, 2010"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005164-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uh7d3d
title: Occurrence Download

description: A dataset containing 2203 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glossogobius giuris (Hamilton, 1822)"
 ]
}

 The dataset includes 2203 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016629-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029513
title: Cuneiform Tablet 1913.14.1518, Spurlock 1913.14.1518

description: [Text Description:] Deliver of barley to Lady of Uruk ❧ [Text or Publication Number Note:] Spurlock 1913.14.1518; CDLI P421370 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Pale Yellowish Pink (5YR 8.5/3) Dark Gray (N 3.25/ 7.7% R) -discoloration ❧ [Physical Object Note:] 4.4 x 2.9 x 1.8 cm (23 g)
DOI: 10.15468/dl.84pa9m
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prionailurus planiceps (Vigors & Horsfield, 1827)"
 ]
}

 The dataset includes 139 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212733-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029486
title: Cuneiform Tablet 1913.14.1517, Spurlock 1913.14.1517

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1517; CDLI P421369 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Pale Orange Yellow (10YR 8/3) ❧ [Physical Object Note:] 5.7 x 4.9 x 2.3 cm (60 g)
DOI: 10.15468/dl.7spqjc
title: Occurrence Download

description: A dataset containing 6181578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculaceae"
 ]
}

 The dataset includes 6181578 records from 2304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020135-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrwdqu
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Picea brachytyla var. complanata (Mast.) W.C.Cheng ex Rehd."
 ]
}

 The dataset includes 396 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176676-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un5nf0
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laccaria trichodermophora G.M.Muell."
 ]
}

 The dataset includes 101 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022272-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2auqj
title: Occurrence Download

description: A dataset containing 20433858 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammalia"
 ]
}

 The dataset includes 20433858 records from 3495 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203192-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20372/aau_rdm/l8absj
title: Characteristics and outcomes of Culture-Negative Versus Culture-Positive Sepsis in Adult Intensive Care Unit Patients at Tikur Anbessa Specialized Hospital: a Retrospective Cohort Study.

description: The Data was Characteristics and outcomes of Culture-Negative Versus Culture-Positive Sepsis in Adult Intensive Care Unit Patients at Tikur Anbessa Specialized Hospital: a Retrospective Cohort Study.
DOI: 10.20372/aau_rdm/oz59jd
title: Therapeutic Efficacy and Safety of Chloroquine in the Treatment of Uncomplicated Plasmodium Vivax Malaria in Arba Minch, Southern Ethiopia

description: The Data was Therapeutic Efficacy and Safety of Chloroquine in the Treatment of Uncomplicated Plasmodium Vivax Malaria in Arba Minch, Southern Ethiopia
DOI: 10.5281/zenodo.11611252
title: Data to accompany "Automatic text clustering for audio attribute elicitation experiment responses", AES 143rd Convention, New York, NY, USA, 2017

description: This work was supported by the EPSRC Programme Grant S3A: Future Spatial Audio for an Immersive Listener Experience at Home (EP/L000539/1) and the BBC as part of the BBC Audio Research Partnership. Details about the data underlying this work, along with the terms for data access, are available from http://dx.doi.org/10.15126/surreydata.00841589.

If you use the data, please cite the following paper:

J. Francombe, T. Brookes, and R. Mason, “Automatic text clustering for audio attribute elicitation experiment responses”, AES 143rd Convention, New York, NY, USA, 2017
DOI: 10.5281/zenodo.11611253
title: Data to accompany "Automatic text clustering for audio attribute elicitation experiment responses", AES 143rd Convention, New York, NY, USA, 2017

description: This work was supported by the EPSRC Programme Grant S3A: Future Spatial Audio for an Immersive Listener Experience at Home (EP/L000539/1) and the BBC as part of the BBC Audio Research Partnership. Details about the data underlying this work, along with the terms for data access, are available from http://dx.doi.org/10.15126/surreydata.00841589.

If you use the data, please cite the following paper:

J. Francombe, T. Brookes, and R. Mason, “Automatic text clustering for audio attribute elicitation experiment responses”, AES 143rd Convention, New York, NY, USA, 2017
DOI: 10.20372/aau_rdm/fg5wkj
title: Health Professionals Reflections on Vaccine Supply Chain Management Practices and Challenges in Public Health Facilities in Addis Ababa City Administration

description: The Data was Health Professionals Reflections on Vaccine Supply Chain Management Practices and Challenges in Public Health Facilities in Addis Ababa City Administration
DOI: 10.5281/zenodo.11608587
title: PreTIS2 Positive and Negative Training Data

description: We retrieved experimental data on translation initiation sites in HEK293T cells from table S2 of (https://doi.org/10.1093/nar/gkab549) that were determined by those authors using a protocol termed TISCA. As we wanted to focus on non-canonical translation, we filtered that data and kept only truncation, extension, uORF, and overlap.uORF translation initiation types that involve either ATG or any of the nine near-cognate start codons. Using the translated amino acid sequences and transcript version IDs provided by (https://doi.org/10.1093/nar/gkab549), we fetched the respective 5'UTR and cDNA nucleotide sequences from ensembl biomart using human gencode GRCh38.p13.

Then, we scanned each cDNA sequence in all three open reading frames and identified the longest matching nucleotide sequence that encodes the respective amino acid chain. For extension, uORF, and overlap.uORF initiation sites, the start site had to be inside the 5'UTR. For truncation initiation sites, the start site had to be inside the coding sequence. 

We also needed to construct negative cases where translation initiation supposedly does not occur. To this aim, we scanned the 5'UTR sequences for all 10 possible start codons. As negatives, we then considered those start codons that were not detected by TISCA, but have enough nucleotides upstream to meet the feature criteria. This resulted in a massive imbalance between both classes, with 17 times as many negatives as positive samples. 

We used as features the identity of the 20 nucleotide positions upstream of a putative start codon, represented as "U", and the 20 nt positions downstream, represented as "D". As each start codon may have its own optimal sequence context, we additionally considered the nature of the particular translation initiation start codon (ATG, CTG, GTG, TTG, AAG, ACG, AGG, ATA, ATC, and ATT). 

The positive and negative datasets can be found below. Whereby, each row is a possible translation initiation site and the columns symbolize the flanking nucleotide for each position as well as the start codon used.