cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16739057
title: Supporting dataset for Sime, Diamond et al. (2025) [submitted]

description: Sime_Diamond_GMD_2025_data.tar.gz > For variables used for Figs 5,6,7,8 and A1,2,3,4,5. Simulation data from HadGEM3-GC3.1-LL outputs as reported in manuscript, and Guarino et al. (2020). Additional detail on variables in README.txt; python code used for analysis and figure production in Sime_Diamond_GMD_2025_abrupt-127k_example.py

prelim_abrupt-127k-main.zip > For sea-ice and insolation data, and code used for analysis and figure production, shown for Figs 2, 3, and A6.

All other data required for analysis and figure production is publicly accessible and referenced in the manuscript.
DOI: 10.5281/zenodo.16739058
title: Supporting dataset for Sime, Diamond et al. (2025) [submitted]

description: Sime_Diamond_GMD_2025_data.tar.gz > For variables used for Figs 5,6,7,8 and A1,2,3,4,5. Simulation data from HadGEM3-GC3.1-LL outputs as reported in manuscript, and Guarino et al. (2020). Additional detail on variables in README.txt; python code used for analysis and figure production in Sime_Diamond_GMD_2025_abrupt-127k_example.py

prelim_abrupt-127k-main.zip > For sea-ice and insolation data, and code used for analysis and figure production, shown for Figs 2, 3, and A6.

All other data required for analysis and figure production is publicly accessible and referenced in the manuscript.
DOI: 10.6084/m9.figshare.27118788
title: Bond et al Long-term population dynamics of western Masai giraffes in the Serengeti Ecosystem

description: Capture-Mark-Recapture data, R code, and Nimble code to implement models for "Long-term population dynamics of western Masai giraffes in the Serengeti Ecosystem."
DOI: 10.6084/m9.figshare.27118788.v1
title: Bond et al Long-term population dynamics of western Masai giraffes in the Serengeti Ecosystem

description: Capture-Mark-Recapture data, R code, and Nimble code to implement models for "Long-term population dynamics of western Masai giraffes in the Serengeti Ecosystem."
DOI: 10.15468/dl.rtdxp2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pithecellobium dulce",
 "Country is Suriname",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019715-250802193616735/datasets/export for details.
DOI: 10.15468/dl.6ds7qq
title: Occurrence Download

description: A dataset containing 40784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pharomachrus mocinno)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 40784 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019716-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14466/cefasdatahub.112
title: Kiribati Water Quality Monitoring Data - March 2019

description: Full water quality monitoring data set from the Commonwealth Marine Economies Programme survey around Tarawa, Kiribati in March 2019. This work was hosted and supported by the Kiribati Ministry of Lands, Environment and Development Environment and Conservation Division (MELAD-ECD), a list of collaborators is given in the attached readme file. The key parameters measured were: nutrients, chlorophyll, total suspended solids, E coli., intestinal Enterococci, vibrio and ESBL-producing bacteria (as a measure of antimicrobial resistance). In situ measurements and surface water samples were collected both from shore and using a small boat in nearshore waters. Full details of sampling and analysis methods are provided in the readme file, available for download alongside the data. Data are separated into surface water measurements and depth profile measurements.
DOI: 10.15468/dl.22uxgt
title: Occurrence Download

description: A dataset containing 3493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pharomachrus pavoninus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3493 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019717-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gs5d6j
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tenellus ternetzi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 203 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019718-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2vrub
title: Occurrence Download

description: A dataset containing 750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microhyla fissipes",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 750 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019719-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d36929
title: Occurrence Download

description: A dataset containing 418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pithecellobium dulce",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 418 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019720-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16752963
title: TGML_202312049_202312049_Compl

description: The eGFP fasta file used for 202312049_202312049_Compl project @TGML.
DOI: 10.15468/dl.e8yxxq
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pithecellobium dulce",
 "Country is Thailand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019721-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ts2sp7
title: Occurrence Download

description: A dataset containing 1104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cynopterus brachyotis)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 1104 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019723-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ket7r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cynopterus brachyotis)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019724-250802193616735/datasets/export for details.
DOI: 10.15468/dl.kea6x5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cynopterus brachyotis)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019725-250802193616735/datasets/export for details.
DOI: 10.15468/dl.xta9hn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AEG5417"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019727-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6w32bw
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "TaxonKey is Phalotris tricolor"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019728-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14466/cefasdatahub.113
title: Electronic tag tracking data from starry smooth-hound Mustelus asterias in the northeast Atlantic 2004-2018

description: The data is derived from the deployment of mark-recapture and electronic tags on starry smooth-hound (Mustelus asterias) in the North Sea and English Channel. Tags were deployed throughout the time period 2004 to 2018. The dataset includes 36 individual M. asterias, 18 of which were tagged with mark-recapture tags only, and 18 were tagging with both mark-recapture and electronic tags. Six electronically tagged M. asterias were geolocated and their estimated daily geographical locations (latitude and longitude) are provided. Depth and temperature data from these six M. asterias are also provided. Conventional Petersen disc and Data storage tags were attached to M. asterias between 2004 - 2018 around the southern UK coast. All tagging of M. asterias was funded by the European Maritime and Fisheries Fund project code ENG 1395.
DOI: 10.14466/cefasdatahub.114
title: Potentially toxic phytoplankton counts from water samples collected from shellfish growing areas in Jersey from 2004 to 2019

description: Counts (in cells per litre) of potentially toxic algal cells for The States of Jersey analysed using the Utermohl method with light microscopy. These data are from water samples collected from designated shellfish growing areas around the coast of Jersey for the period 01/4/2004 - 31/3/2019. Samples are collected by Jersey governmental officers using sampling protocols provided by Cefas.  Enumeration is by the Utermohl method using high-power, inverted microscopes and well-trained personnel. Potentially toxic phytoplankton identified to genera or species level. and enumeration of marine phytoplankton.  Cefas have also developed UKAS 17025 accredited and detailed SOPs for the delivery of a comprehensive service from sample receipt to timely reporting of analytical results to the customer. The plankton laboratory at Cefas Lowestoft has been UKAS accredited for phytoplankton analysis since 2007. All laboratory procedures are conducted in compliance with the UKNRL SOP for the identification. The concentration of algae which trigger additional sampling are: Alexandrium sp (PSP): Presence of cells in sample; Dinophysiaceae / P. lima (DSP): 100 cells/litre; Pseudonitzschia sp (ASP): 150,000 cells/litre. Prorocentrum cordatum/minimum became part of the programme from 2010 onwards. Post 2010 Karenia was not recorded as it is a non-reportable taxa.
DOI: 10.15468/dl.dwfg9a
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pithecellobium dulce",
 "Country is Togo",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019730-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy4akp
title: Occurrence Download

description: A dataset containing 7335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus versicolor)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 7335 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019731-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29838845
title: Supplementary Material for: Antihypertensive drugs after Thrombectomy in Acute Ischemic Stroke with Poor Collateral are Associated with Unfavorable Outcome

description: OBJECTIVE: The impact of antihypertensive drugs on functional outcome in patients with acute ischemic stroke (AIS) after endovascular thrombectomy (EVT) remains controversial and may vary with collateral status (CS). We aim to investigate the joint effect of CS and antihypertensive drugs on functional outcome in patients with AIS.
METHODS: We retrospectively analyzed anterior circulation large-vessel occlusion (LVO) AIS patients who underwent EVT in our hospital between January 2018 and December 2022. The patients were dichotomized to good CS, reflected by hypoperfusion index ratio (HIR) ≤ 0.4, and poor CS, reflected by HIR &gt; 0.4. Functional outcome was assessed using modified Rankin Scale (90d-mRS). The primary outcome was defined as the 90d-mRS &gt; 2. The association between antihypertensive drugs within 48 hours after EVT and functional outcome was evaluated. Furthermore, the interaction between HIR and antihypertensive drugs was measured.
RESULTS: A total of 372 patients were included. The proportion of patients receiving antihypertensive drugs was comparable between the good CS and poor CS group (51% vs. 56%, P = 0.285). Antihypertensive drugs were significantly associated with higher odds ratio (OR) of unfavorable outcome (OR 3.83 [95% confidence interval (CI), 2.12-6.90]; P &lt; 0.001) in poor CS group. No correlation was found in good CS group (P = 0.159). The interaction between antihypertensive drugs and baseline CS was statistically significant (Pinteraction = 0.040, adjusted Pinteraction = 0.029).
CONCLUSION: The association between antihypertensive drugs and functional outcome varied based on the CS. These findings suggest that antihypertensive drugs should be used with caution in AIS patients with poor CS after EVT.
DOI: 10.6084/m9.figshare.29838845.v1
title: Supplementary Material for: Antihypertensive drugs after Thrombectomy in Acute Ischemic Stroke with Poor Collateral are Associated with Unfavorable Outcome

description: OBJECTIVE: The impact of antihypertensive drugs on functional outcome in patients with acute ischemic stroke (AIS) after endovascular thrombectomy (EVT) remains controversial and may vary with collateral status (CS). We aim to investigate the joint effect of CS and antihypertensive drugs on functional outcome in patients with AIS.
METHODS: We retrospectively analyzed anterior circulation large-vessel occlusion (LVO) AIS patients who underwent EVT in our hospital between January 2018 and December 2022. The patients were dichotomized to good CS, reflected by hypoperfusion index ratio (HIR) ≤ 0.4, and poor CS, reflected by HIR &gt; 0.4. Functional outcome was assessed using modified Rankin Scale (90d-mRS). The primary outcome was defined as the 90d-mRS &gt; 2. The association between antihypertensive drugs within 48 hours after EVT and functional outcome was evaluated. Furthermore, the interaction between HIR and antihypertensive drugs was measured.
RESULTS: A total of 372 patients were included. The proportion of patients receiving antihypertensive drugs was comparable between the good CS and poor CS group (51% vs. 56%, P = 0.285). Antihypertensive drugs were significantly associated with higher odds ratio (OR) of unfavorable outcome (OR 3.83 [95% confidence interval (CI), 2.12-6.90]; P &lt; 0.001) in poor CS group. No correlation was found in good CS group (P = 0.159). The interaction between antihypertensive drugs and baseline CS was statistically significant (Pinteraction = 0.040, adjusted Pinteraction = 0.029).
CONCLUSION: The association between antihypertensive drugs and functional outcome varied based on the CS. These findings suggest that antihypertensive drugs should be used with caution in AIS patients with poor CS after EVT.
DOI: 10.6084/m9.figshare.29838851
title: Supplementary Material for: Perceived chronic stress prior to SARS-CoV-2 infection predicts ongoing symptomatic COVID-19: a prospective cohort study

description: Introduction: Understanding chronic stress as a potential risk factor for COVID-19 progression could inform public health measures and personalized preventive interventions. Therefore, we investigated the influence of chronic stress prior to SARS-CoV-2 infection on symptom persistence one month after COVID-19 onset.
Methods: The participants of this prospective cohort study named “StressLoC” were adults with COVID-19 who had tested positive for SARS-CoV-2infection within the last seven days. Pre-existing perceived chronic stress assessed by the Perceived Stress Scale (PSS-10) was the primary predictor. The number of stressful life events and hair cortisol concentration served as additional measures of pre-existing chronic stress. The main outcome was examined using the Long COVID Symptom and Impact Tool. It was defined as the presence of any new and impactful COVID-19-related symptom at month 1 after inclusion. Accordingly, participants were assigned to either the ongoing symptomatic COVID-19 group (OSC-G) or control group (CG).
Results: The study cohort comprised 288 participants (73.3% female), with a median age of 46 years (IQR 35-56). A total of 210 participants (72.9%) were categorized as OSC-G. Multivariate logistic regression showed that allocation to OSC-G was predicted by perceived chronic stress in the month prior to COVID-19 (OR: 1.08, 95% CI: 1.03 to 1.14; p = .002) and the number of pre-existing symptoms (OR: 1.08, 95% CI: 1.03 to 1.13; p = .001). The number of stressful life events and hair cortisol concentration did not predict OSC-G allocation.
Conclusion: Results suggest that higher levels of pre-existing perceived chronic stress increase the odds of developing ongoing symptomatic COVID-19.
DOI: 10.6084/m9.figshare.29838851.v1
title: Supplementary Material for: Perceived chronic stress prior to SARS-CoV-2 infection predicts ongoing symptomatic COVID-19: a prospective cohort study

description: Introduction: Understanding chronic stress as a potential risk factor for COVID-19 progression could inform public health measures and personalized preventive interventions. Therefore, we investigated the influence of chronic stress prior to SARS-CoV-2 infection on symptom persistence one month after COVID-19 onset.
Methods: The participants of this prospective cohort study named “StressLoC” were adults with COVID-19 who had tested positive for SARS-CoV-2infection within the last seven days. Pre-existing perceived chronic stress assessed by the Perceived Stress Scale (PSS-10) was the primary predictor. The number of stressful life events and hair cortisol concentration served as additional measures of pre-existing chronic stress. The main outcome was examined using the Long COVID Symptom and Impact Tool. It was defined as the presence of any new and impactful COVID-19-related symptom at month 1 after inclusion. Accordingly, participants were assigned to either the ongoing symptomatic COVID-19 group (OSC-G) or control group (CG).
Results: The study cohort comprised 288 participants (73.3% female), with a median age of 46 years (IQR 35-56). A total of 210 participants (72.9%) were categorized as OSC-G. Multivariate logistic regression showed that allocation to OSC-G was predicted by perceived chronic stress in the month prior to COVID-19 (OR: 1.08, 95% CI: 1.03 to 1.14; p = .002) and the number of pre-existing symptoms (OR: 1.08, 95% CI: 1.03 to 1.13; p = .001). The number of stressful life events and hair cortisol concentration did not predict OSC-G allocation.
Conclusion: Results suggest that higher levels of pre-existing perceived chronic stress increase the odds of developing ongoing symptomatic COVID-19.
DOI: 10.6084/m9.figshare.29838857
title: Supplementary Material for: The Association of Proteinuria Target Achievement Timing and Stability with Adverse Kidney Outcomes Among Patients with IgA Nephropathy: A Cohort Study

description: Introduction: Current KDIGO guidelines for IgA nephropathy (IgAN) recommend proteinuria should be maintained at &lt;0.5 g/day. In this study, we aim to evaluate the association of proteinuria target achievement timing and stability with adverse kidney outcomes.
Methods: A cohort study was conducted with IgAN patients at Peking University First Hospital. We introduced three metrics: the timing of proteinuria first to target (TTT) in Part A, time in target range (TTR) and area out of target (AOT) of proteinuria in Part B to describe target achievement timing and stability respectively and the target of proteinuria was less than 0.5 g/day. We analyzed the association between those three metrics and the composite kidney outcome, which was defined as the first occurrence of either end-stage kidney disease (ESKD or a &gt;50% decrease in eGFR from baseline. 
Results: In Part A, the primary outcome occurred in 166 (18.65%) patients. The 10-year kidney survival probability was 73% in TTT &lt; 6 months group and 64% in TTT ≥ 6 months group (P=0.006). We identified a significant association between the rate of initial target achievement and clinical outcomes. In Part B, the primary outcome occurred in 385 (23.21%) patients. The 10-year kidney survival probability was 45% in T1 (TTR=0%); 60% in T2 (0%