cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3629798_d2
title: Additional file 3: Table S3. of Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

description: Transcriptional level of Rickettsia rickettsii genes in midgut of ticks exposed to temperature upshift, blood-feeding or both stimuli simultaneously. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3629798_d3
title: Additional file 1: Table S1. of Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

description: Primers used in RT-qPCR analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3629720_d15
title: Additional file 7: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: Counts and analysis of three replicates in 20Â ÎźM fluconazole. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3629720_d16
title: Additional file 16: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: A range of additional potential determinants of guide effect. (XLSX 2213 kb)
DOI: 10.6084/m9.figshare.c.3629720_d17
title: Additional file 5: of Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design

description: List of sequenced samples, their respective barcodes, and other metadata. (XLSX 18 kb)
DOI: 10.5281/zenodo.14466153
title: Zusammenfassung Interviewergebnisse - Hotellerie San Agustín
DOI: 10.5281/zenodo.14466154
title: Zusammenfassung Interviewergebnisse - Hotellerie San Agustín
DOI: 10.5281/zenodo.14466394
title: Zusammenfassung Interviewergebnisse - Hotellerie San Agustín
DOI: 10.6084/m9.figshare.c.3630296_d4
title: Additional file 1: Table S1. of Leptin and insulin up-regulate miR-4443 to suppress NCOA1 and TRAF4, and decrease the invasiveness of human colon cancer cells

description: List of primers used. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3630314_d1
title: Additional file 2: of Normative values for musculoskeletal- and neuromotor fitness in apparently healthy Norwegian adults and the association with obesity: a cross-sectional study

description: Availability of data. The available data generated or analyzed for this research article. (XLSX 247Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d1
title: Additional file 6: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Analysis of carbohydrate-binding module (CBM) containing proteins, arranged by CBM family. (XLS 14Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d13
title: Additional file 7: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: CDS of PbWRKY genes. (GZ 13907Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d2
title: Additional file 16: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Properties of chitinases retrieved from the genomes of Ab, MAC and MR. The active site position, number of amino acid, molecular weight (MW), presence of signal peptide and domains (CBM, LysM and others in addition to the catalytic domain) have been analyzed for the respective genes in the genome and listed. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3630323_d2
title: Additional file 2: of The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses

description: Amino acid sequence logos of 21 motifs identified in PpNAC proteins using MEME. Data shown are the number of proteins containing each motif, the width, the E-value, the domain in which it is located, and the annotation of each motif is indicated. (XLS 379 kb)
DOI: 10.6084/m9.figshare.c.3630326_d3
title: Additional file 15: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Sexuality related genes in Ab, MAC and MR genomes. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d4
title: Additional file 5: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Major protein families of Ab, MAC and MR genomes implicated in the pathogen-host interactions. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3630338_d1
title: Additional file 1: of The cost of illness attributable to diabetic foot and cost-effectiveness of secondary prevention in Peru

description: Cost estimates of procedures and preventative strategies using the ingredients-based approach (Peru, 2012). (XLS 57 kb)
DOI: 10.6084/m9.figshare.c.3630326_d5
title: Additional file 9: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by PL family. (XLS 7Â kb)
DOI: 10.6084/m9.figshare.c.3630770_d2
title: MOESM3 of Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity

description: Additional file 3: Figure S3. ARDB search result.
DOI: 10.6084/m9.figshare.c.3630767_d8
title: Additional file 16: of Survey of cryptic unstable transcripts in yeast

description: Primers Used for RT-qPCR. RT-qPCR primer names and sequences. Primers are specific to either S.cerevisiae (S.cere) or S.paradoxus (S.para), but in some cases could be used in either species background. All primers were named for the nearest or overlapping gene annotation. Those primers labeled “–T” denote the presence of the unique 5′ tagged used for strand-specificity in RT reactions. An asterisk in the final column denotes candidates not requiring strand-specific RT-qPCR; for these candidates qPCR was performed on random hexamer primed cDNA (see Methods). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3630767_d10
title: Additional file 5: Table S1. of Survey of cryptic unstable transcripts in yeast

description: 4x Conserved CUT Annotations. A table containing the strain-specific genomic coordinates for all 855 4x conserved CUTs identified in this study. (XLSX 134Â kb)
DOI: 10.6084/m9.figshare.c.3630803_d1
title: Additional file 1: of ATRX immunostaining predicts IDH and H3F3A status in gliomas

description: Overview of ATRX staining results in tissue microarrays and full slides in the same tumors. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3631211_d2
title: MOESM1 of Inter-rater reliability of a national acute stroke register

description: Additional file 1. Contingency tables of all variables.
DOI: 10.6084/m9.figshare.c.3631214_d2
title: Additional file 1: of Rapid gene identification in sugar beet using deep sequencing of DNA from phenotypic pools selected from breeding panels

description: “concat_contigs.py” script for generation of RefBeet-1.2.joined.fa. The python script “concat_contigs.py” and supporting files were used to generate the concatenated sequence RefBeet-1.2.joined.fa from RefBeet-1.2.fna [GenBank:AYZS00000000.1] [18]. It was tested on Unix/Linux systems with at least python version 2.7 installed. (ZIP 2 kb)
DOI: 10.6084/m9.figshare.c.3631244_d1
title: Additional file 1: of Factors related to non-compliance to HPV vaccination in Roraima—Brazil: a region with a high incidence of cervical cancer

description: Spreadsheet containing raw data of this study. (XLS 1492 kb)
DOI: 10.6084/m9.figshare.c.3631247_d1
title: Additional file 2: of MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability

description: Dataset S1: MiRNA expression in colorectal cancer samples. (Microsoft Excel spreadsheet) (XLSX 412 kb)
DOI: 10.6084/m9.figshare.c.3631247_d3
title: Additional file 3: of MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability

description: Dataset S2. MiRNA expression in pancreatic cancer samples. (Microsoft Excel spreadsheet) (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3631274_d1
title: Additional file 1: of Functional morphology of giant mole crab larvae: a possible case of defensive enrollment

description: Descriptive matrix of specimen A (ZMUC-CRU-8679). (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3631805_d1
title: Additional file 1: of Rational design of cancer gene panels with OncoPaD

description: Description of tumor cohorts. Excel file with description of the mutational datasets currently used by the OncoPaD web service (Table S1)ďťż. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.c.3631802_d1
title: Additional file 2: Table S2.A-F. of Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation

description: Gene Clustering analyses. Six transcriptional patterns identified by k-means clustering analysis in cfbp1 and cyfbp mutants. (ZIP 136 kb)
DOI: 10.6084/m9.figshare.c.3631808_d1
title: MOESM4 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 4. The alignment of designed primer sets with HA sequences of H3N2 virus retrieved from GISAID.
DOI: 10.6084/m9.figshare.c.3631802_d2
title: Additional file 4: Table S3. of Transcriptomic and proteomic approach to identify differentially expressed genes and proteins in Arabidopsis thaliana mutants lacking chloroplastic 1 and cytosolic FBPases reveals several levels of metabolic regulation

description: List of cfbp1 and cyfbp genes identified as differentially expressed in rosettes and roots by microarray analysis which are involved in the Calvin cycle, glycolysis, and starch metabolism. (CSV 9 kb)
DOI: 10.6084/m9.figshare.c.3631808_d3
title: MOESM5 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 5. The alignment of designed primer sets with NA sequences of H3N2 virus retrieved from GISAID.
DOI: 10.6084/m9.figshare.c.3631805_d2
title: Additional file 4: of Rational design of cancer gene panels with OncoPaD

description: Comparison with commercial panels. Excel file containing the results of the comparison of gene panels designed employing OncoPaD with commercially available panels (Table S3)ďťż. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3631808_d4
title: MOESM1 of Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

description: Additional file 1. The list of HA and NA sequences retrieved from GISAID database. This supplementary file was GISAD acknowledge table consisted of the list of HA and NA sequences including the submitting laboratories.
DOI: 10.6084/m9.figshare.c.3632690_d2
title: Additional file 5: Table S6. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

description: Sheet 1 = Comparative BLASTp analysis of 4 genomes, Sheet 2 = Alignment of scaffold 11.1 of genome P29 against C. difficile CD630 genome. (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3632690_d3
title: Additional file 3: Table S4. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

description: SNPs identified by Mauve alignments of genomes of C. difficile strains 19.3 and 22.1. Table S5. Bidirectional BLASTp analysis of peptide sequences predicted from genomes of C. difficile strains 19.3 and 22.1 to identify amino acid changes caused by SNPs in the genomes. Table S8. Assembly Statistics downloaded from short read archives. Table S9. Unique proteins identified from the All Vs All BLASTp analysis of C. difficile genomes. (XLSX 632Â kb)
DOI: 10.6084/m9.figshare.c.3632690_d5
title: Additional file 4: Table S11. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

description: Regions identified in each C. difficile genome by PHAST. Sheet 1. C. difficile strain P29 genome, Sheet 2. C. difficile strain H3 genome, Sheet 3. C. difficile strain 5.3 genome, Sheet 4. C. difficile strain 19.3 genome. Sheet 5. C. difficile strain 22.1 genome. (XLSX 134Â kb)
DOI: 10.15468/dl.ay3vsu
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capparis acutifolia Sweet"
 ]
}

 The dataset includes 512 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034188-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3633206_d1
title: Additional file 3: of CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data

description: Listing of high-content image-based features generated by CellProfiler, categorized by feature type. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3633218_d1
title: Additional file 1 of Case-oriented pathways analysis in pancreatic adenocarcinoma using data from a sleeping beauty transposon mutagenesis screen

description: Significant CIS enriched pathways and disrupted genes. Number in the parenthesis represents # of cases with the gene mutated. (CSV 13.4 kb)
DOI: 10.6084/m9.figshare.c.3634367_d1
title: Additional file 3: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Genomic sequences corresponding to known I. ricinus genes. Genome contigs corresponding to known I. ricinus genes including search validation parameters are listed. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d3
title: Additional file 1: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Homology comparison to the I. scapularis genome. A description of the best match including e-value, identity, bit score and hit length are listed for each contig/scaffold. (XLSX 10588Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d4
title: Additional file 4: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Homology comparison to Acari genomes (except I. scapularis ). A description of the best match including e-value, identity, bit score and hit length of a homology comparison against all Acari genomes registered at NCBI Genbank at the time of analysis except I. scapularis, namely Dermatophagoides farinae, Metaseiulus occidentalis, Rhipicephalus microplus, Tetranychus urticae and Varroa destructor, are listed for each contig. (XLSX 1023Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d6
title: Additional file 9: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Multilevel distribution of annotated transcripts and proteins. GO terms with at least 50 assigned sequences per term for the transcriptome and 5 for the proteome are listed. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d7
title: Additional file 2: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Mapping of RNA reads against genome contigs. The total number of mapped RNA reads and the consensus length of the mapping are described for each genome contig. (XLSX 7089Â kb)
DOI: 10.15468/dl.uhqp3f
title: Occurrence Download

description: A dataset containing 3189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Guilandina bonduc L."
 ]
}

 The dataset includes 3189 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034189-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634367_d10
title: Additional file 8: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Proteome annotations for the naĂŻve I. ricinus midgut. The proteome annotations are divided in cross-validated annotations (i.e. independently retrieved annotations of the proteins and the transcripts are identical or similar) and not significant annotations, for which the Mascot scores were below the significance threshold. (XLSX 169Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d11
title: Additional file 5: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Putative genes identified by transcript discovery in I. ricinus genome. The length of the gene, its start and end points, its strand specificity, the number of assigned transcripts, the length of the longest transcript and the number of total and spliced assigned reads are presented for each gene identified. (XLSX 418Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d9
title: Additional file 13: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: FDR analysis of mass spectrometry search results. Mass spectrometry search results against concatenated target-decoy databases including protein scores and cumulative FDR. (XLSX 138Â kb)
DOI: 10.6084/m9.figshare.c.3634367_d13
title: Additional file 6: of Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naĂŻve midgut

description: Transcriptome annotations for the naĂŻve I. ricinus midgut. A description of the annotated sequence, e-value, mean similarity, GO IDs, enzyme codes and InterProScan results are listed for each annotated transcript. (XLSX 3707Â kb)
DOI: 10.6084/m9.figshare.c.3634379_d1
title: Additional file 1: of The association between psychosocial and structural-level stressors and HIV injection drug risk behavior among Malaysian fishermen: A cross-sectional study

description: Waves_dataset. (DTA 4047 kb)
DOI: 10.15468/dl.9p48c7
title: Occurrence Download

description: A dataset containing 4655 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chengiopanax sciadophylloides (Franch. & Sav.) C.B.Shang & J.Y.Huang"
 ]
}

 The dataset includes 4655 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034190-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634880_d2
title: Additional file 11: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Genetic loci associated with Aphanomyces resistance, earliness and plant height detected by genome-wide association mapping using the MLMM method. (a) Genetic positions are estimated on the genetic map resulting from the projection of the marker map from Hamon et al. [43] onto the consensus map from Tayeh et al. [49]; (b) A linkage disequilibrium (LD) block is designed with all markers in LD (r 2 &gt; 0.2) with the associated marker. LD blocks are named in consecutive numerical order following their linkage group (LG) name and their genetic position; (c) Aphanomyces resistance and earliness Meta-QTL (quantitative trait loci) described in [43]; (d) Initial QTL for Aphanomyces resistance and earliness before meta-analysis described in [41, 43]; (e) Trait-associated marker(s) and their genetic position(s) in the LD blocks. PsCam- markers are SNPs developed by Tayeh et al. [49], Af is a morphological gene involved in leaves shape, other markers are SSRs (detected allele in brackets); (f) Minor allele frequency (MAF) of each detected marker in the collection; (g) Variables are coded as described in Additional file 4; (h) significant p-value of the marker-trait association &lt; 2.5E-5; (i) mean value of the trait corrected with the effect of all markers included in the MLMM analysis; (j) allelic effect of the marker on the variable, the sign depends on the allele code; (k) standard error at the marker around the mean value of the trait in the collection. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3634880_d3
title: Additional file 2: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Simple sequence repeat (SSR) markers used to genotype the pea-Aphanomyces collection. (a) main Aphanomyces resistance quantitative trait loci (QTL) defined in [43]. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3634880_d5
title: Additional file 16: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Least square means (LSMeans) of phenotypic data in the pea-Aphanomyces collection after ANOVA. Variables are coded as in Additional file 4. NA: missing data. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3634880_d4
title: Additional file 14: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Marker haplotype composition of the pea-Aphanomyces collection. (a) Name of marker haplotype carried by each line as described in Additional file 13, at each of the 14 consistent linkage disequilibrium (LD) blocks detected; dark green and red: favourable and unfavourable marker haplotypes, respectively, as defined in the Material and Methods section of the manuscript; (b) coordinates of each line of the collection on the first Multiple Factor Analysis principal component; the pea lines of the collection are ranked according to these coordinates; (c) Composition of each line in favourable and unfavourable haplotypes, is described in Additional file 13; (d) marker haplotypes with either a missing value or heterozygous score for at least one marker of a LD block. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3634880_d8
title: Additional file 15: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Annotation of markers in detected linkage disequilibrium (LD) blocks for putative candidate genes. (a) LD block were constructed with markers detected by genome-wide association mapping and markers in LD with them, LD block are named according to Additional file 11; (b) genetic positions are estimated as described in Additional file 11; For each LD block:(c) traits associated with markers in the LD block; (d) Pairwise LD between each marker and the marker(s) detected by GWA in the LD block (detected marker in bold); (e) putative protein annotation underlying each marker based on comparative Blast X data from Tayeh et al. [49], see Methods section; (f) putative function of the protein in plant disease resistance based on the literature; (g) putative function of the protein in plant development based on the literature; (h) reference for protein function involved in plant disease resistance or plant development; (i) Pea cloned genes referred in literature; (j) extract of annotation data from Tayeh et al. [49], Blast X of marker sequence onto P. sativum, M. truncatula, G. max and A. thaliana proteins. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3634880_d6
title: Additional file 7: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Variable contribution in the two first Multiple Factor Analysis (MFA) principal components. (a) Variables are coded as described in Additional file 4, (b) percentage of variable contribution in the construction of the MFA axis, ‘*’: the six highest contributions; (c) cos2 indicates the representation quality of the variable on the MFA axis, ‘*’: 0.2 &lt; cos2 &lt; 0.5, ‘**’: cos2 &gt; 0.5; (d) correlation between variable and MFA axis, ‘*’: 0.5 &lt; r 2 &lt; 0.8, ‘**’: r 2 &gt; 0.8. (XLSX 17 kb)