cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12899412.v1
title: Impacts of Topography on the Land Cover Classification in the Qilian Mountains, Northwest China

description: There are many disagreements and uncertainties among global land use/land cover (LULC) products, which make it unsuitable to apply these products directly to a specific region. In this study, Enhanced Vegetation Index (EVI) time-series data from the Moderate Resolution Imaging Spectroradiometer (MODIS) with 250 m spatial resolution, combining with geographic features, were used for LULC classification in the Qilian Mountains, northwest China. The authors tested the Random Forest (RF), the Classification and Regression Tree (CART), and the Support Vector Machine (SVM) classifiers. Their final classification product was also compared with 3 global LULC maps. The results showed that (1) topographic information could improve the classification results to some extent when they were integrated with spectral information in complex mountain regions; (2) the classification results using an RF classifier reached the highest overall accuracy (88.84%); (3) there was consistency with homogenous classes between our classification result and the 3 LULC products, but inconsistency with heterogeneous classes; and (4) the overall accuracy of this study was improved about 10% compared with the 3 LULC products. Therefore, this classification product is more suitable than global LULC products when considering complex terrain factors in mountain regions.
DOI: 10.6084/m9.figshare.7132271
title: Additional file 3: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: Lists of up- or downregulated genes with correlating changes of H3K9ac, Kbu, or Kcr under submergence or starvation. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.7132259
title: Additional file 2: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: LC-MS results. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.7132292
title: Additional file 4: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: Expression levels of genes with concurrent changes of Kbu, Kcr, and H3K9ac. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.20761532.v1
title: Additional file 6 of Maternal obesity alters methylation level of cytosine in CpG island for epigenetic inheritance in fetal umbilical cord blood

description: Additional file 6: Table S6. Expressions of HDACs and DNMTs analyzed by RT-qPCR
DOI: 10.6084/m9.figshare.20763669
title: Repression of linc01555 up-regulates angiomotin-p130 via the microRNA-122-5p/clic1 axis to impact vasculogenic mimicry-mediated chemotherapy resistance in small cell lung cancer

description: Long non-coding ribonucleic acid 01555 (linc01555) is a brand-new long non-coding RNA (lncRNA) that acts a carcinogenic function in various cancers. However, its role in small cell lung cancer (SCLC) is uncertain. This research was to figure out the role of linc01555 in cisplatin (DDP) resistance of SCLC cells and its possible latent mechanism. After establishment of the resistant sub-strain H446/DDP or DMS-53/DDP, detection of linc01555, microRNA (miR)-122-5p and CLICl was done in the H446/DDP or DMS-53/DDP cell line. After intervention, cell biological functions were determined, as well as tube formation ability. The detection of angiomotin (Amot)-p130 and the validation of the regulatory mechanism were performed. Furthermore, tumor xenografts were applied in nude mice to evaluate the effect of linc01555 on DDP resistance in SCLC in vivo. Linc01555 was elevated in SCLC tissues and cells, and in H446/DDP cells or DMS-53/DDP vs. its parental cells; Restraining linc01555 or elevating miR-122-5p repressed the proliferation and metastasis of H446/DDP or DMS-53/DDP cells and vasculogenic mimicry (VM) formation. CLIC1 mediated miR-122-5p to influence the occurrence and development of SCLC. Linc01555 competitively combined with miR-122-5p, which targeted CLIC1. Refrained linc01555 elevated Amot-p130 via the miR-122-5p/CLIC1 axis. Reduced linc01555 refrained tumor growth and DDP resistance in vivo.In short, linc01555 may cause changes in DDP resistance via miR-122-5p/CLIC1 in SCLC. The finding may offer drug targets for SCLC resistance.
DOI: 10.6084/m9.figshare.7132271.v1
title: Additional file 3: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: Lists of up- or downregulated genes with correlating changes of H3K9ac, Kbu, or Kcr under submergence or starvation. (XLSX 79 kb)
DOI: 10.5281/zenodo.10362510
title: Hartree potentials and geometries of relaxed on-surface ice clusters in "Structure discovery in Atomic Force Microscopy imaging of ice"

description: Hartree potentials and geometries of on-surface DFT-relaxed ice clusters used in the paper "Structure discovery in Atomic Force Microscopy imaging of ice".
The data are saved in a compressed .tar.gz archive. The unpacked archive contains the data for each ice cluster in the .xsf format. The density functional theory (DFT) calculations were done using the Vienna Ab-initio Simulation Package with the optB86b-vdW density functional.
DOI: 10.5281/zenodo.10362511
title: Hartree potentials and geometries of relaxed on-surface ice clusters in "Structure discovery in Atomic Force Microscopy imaging of ice"

description: Hartree potentials and geometries of on-surface DFT-relaxed ice clusters used in the paper "Structure discovery in Atomic Force Microscopy imaging of ice".
The data are saved in a compressed .tar.gz archive. The unpacked archive contains the data for each ice cluster in the .xsf format. The density functional theory (DFT) calculations were done using the Vienna Ab-initio Simulation Package with the optB86b-vdW density functional.
DOI: 10.6084/m9.figshare.20761561.v1
title: Additional file 6 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 6: Dataset S3. Reports for homologous gene cluster analysis of Lactobacillus panisapium.
DOI: 10.6084/m9.figshare.7132253
title: Additional file 3: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

description: Table S13. Mapping of RNA-seq reads to two PM genomes. Table S14. Percentages of PM genes expressed in mycelia and/or haustoria. Table S15. Functional enrichment of the differentially expressed genes in Oidium neolycopersici UMSG2. Table S16. Functional enrichment of the differentially expressed genes in Golovinomyces cichoracearum UMSG3. Table S17. Orthologous genes up-regulated between any two of the three PM biotypes examined. Table S18. Orthologus genes Up-regulated in haustoria in both OnM2 and GcM3. Table S19. Orthologus genes Up-regulated in haustoria in both GcC1 and GcM3. Table S20. Total number and percentage of predicted partial genes that are expressed. Table S21. A comparison of powdery mildew interaction with dicot and monocot hosts. Table S22. Composition of genes defining the secretome in eight PM genomes. Table S23. Predicted powdery mildew genes encoding proteins with a YxC motifa in eight PM genomes. Table S24. Ka/Ks ratios of CSEP gene clusters from seven PM biotypes. Table S25. High-level expression of six G. cichoracearum UCSC1-specific CSEP genes in haustoria. Table S26. CSEP genes of Gc UCSC1 and Gc UMSG3 that show induced expression in haustoria. Table S27. Shared CSEP genes among Gc UCSC1, Gc UMSG3 and Gc UMSG1 that show induced expression in haustoria of Gc UCSC1 and Gc UMSG3. Table S28. O. neolycopersici UMSG2-specific CSEP genes that are induced in haustoria. Table S29. BUSCO completeness assessment of the protein set for each PM biotype. (XLSX 234 kb)
DOI: 10.34740/kaggle/dsv/7637202
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.12899412
title: Impacts of Topography on the Land Cover Classification in the Qilian Mountains, Northwest China

description: There are many disagreements and uncertainties among global land use/land cover (LULC) products, which make it unsuitable to apply these products directly to a specific region. In this study, Enhanced Vegetation Index (EVI) time-series data from the Moderate Resolution Imaging Spectroradiometer (MODIS) with 250 m spatial resolution, combining with geographic features, were used for LULC classification in the Qilian Mountains, northwest China. The authors tested the Random Forest (RF), the Classification and Regression Tree (CART), and the Support Vector Machine (SVM) classifiers. Their final classification product was also compared with 3 global LULC maps. The results showed that (1) topographic information could improve the classification results to some extent when they were integrated with spectral information in complex mountain regions; (2) the classification results using an RF classifier reached the highest overall accuracy (88.84%); (3) there was consistency with homogenous classes between our classification result and the 3 LULC products, but inconsistency with heterogeneous classes; and (4) the overall accuracy of this study was improved about 10% compared with the 3 LULC products. Therefore, this classification product is more suitable than global LULC products when considering complex terrain factors in mountain regions.
DOI: 10.6084/m9.figshare.7132325
title: Additional file 10: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S10. Kyoto Encyclopedia of Genes and Genomes (KEGG) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.9229169
title: Projected provincial population for China

description: Projected provincial population by age, sex and educational attainment for China under SSPs from 2010 to 2100
DOI: 10.6084/m9.figshare.7132259.v1
title: Additional file 2: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: LC-MS results. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.7132292.v1
title: Additional file 4: of Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

description: Expression levels of genes with concurrent changes of Kbu, Kcr, and H3K9ac. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.7132445.v1
title: Additional file 8: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S8. Cellular component (CC) result of the downregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.7132463.v1
title: Additional file 9: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S9. Molecular function (MF) result of the downregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.7132298
title: Additional file 2: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S2. Exon length analyses of FKBP12, 42, 62 and 72 in various species. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.7132364.v1
title: Additional file 7: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S7. MdFKBP62a and MdFKBP65a/b interaction network and co-expression in apple. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7132298.v1
title: Additional file 2: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S2. Exon length analyses of FKBP12, 42, 62 and 72 in various species. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.7132310
title: Additional file 3: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S3. Promoter analyses of MdFKBPs. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.7132325.v1
title: Additional file 10: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S10. Kyoto Encyclopedia of Genes and Genomes (KEGG) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.7132334.v1
title: Additional file 1: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S1. All expressed transcripts in chronic constriction injury (CCI) model rats. (XLSX 3674Â kb)
DOI: 10.6084/m9.figshare.7132382.v1
title: Additional file 8: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S8. MdFKBP62a and MdFKBP65a/b interaction network in String10.0. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.7132346.v1
title: Additional file 2: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S2. All expressed genes in chronic constriction injury (CCI) model rats. (XLSX 2944Â kb)
DOI: 10.6084/m9.figshare.7132442
title: Additional file 1: of Genes significantly associated with lineage II food isolates of Listeria monocytogenes

description: List of 176 isolates included in this study and the associated metadata. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.7132349.v1
title: Additional file 6: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S6. The IDs of FKBP12 and FKBP42 in various species. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7132361
title: Additional file 3: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S3. Differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.7132364
title: Additional file 7: of Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

description: Table S7. MdFKBP62a and MdFKBP65a/b interaction network and co-expression in apple. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7132460
title: Additional file 2: of Genes significantly associated with lineage II food isolates of Listeria monocytogenes

description: List of stress tolerance genes included in this study. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7132253.v1
title: Additional file 3: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

description: Table S13. Mapping of RNA-seq reads to two PM genomes. Table S14. Percentages of PM genes expressed in mycelia and/or haustoria. Table S15. Functional enrichment of the differentially expressed genes in Oidium neolycopersici UMSG2. Table S16. Functional enrichment of the differentially expressed genes in Golovinomyces cichoracearum UMSG3. Table S17. Orthologous genes up-regulated between any two of the three PM biotypes examined. Table S18. Orthologus genes Up-regulated in haustoria in both OnM2 and GcM3. Table S19. Orthologus genes Up-regulated in haustoria in both GcC1 and GcM3. Table S20. Total number and percentage of predicted partial genes that are expressed. Table S21. A comparison of powdery mildew interaction with dicot and monocot hosts. Table S22. Composition of genes defining the secretome in eight PM genomes. Table S23. Predicted powdery mildew genes encoding proteins with a YxC motifa in eight PM genomes. Table S24. Ka/Ks ratios of CSEP gene clusters from seven PM biotypes. Table S25. High-level expression of six G. cichoracearum UCSC1-specific CSEP genes in haustoria. Table S26. CSEP genes of Gc UCSC1 and Gc UMSG3 that show induced expression in haustoria. Table S27. Shared CSEP genes among Gc UCSC1, Gc UMSG3 and Gc UMSG1 that show induced expression in haustoria of Gc UCSC1 and Gc UMSG3. Table S28. O. neolycopersici UMSG2-specific CSEP genes that are induced in haustoria. Table S29. BUSCO completeness assessment of the protein set for each PM biotype. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.7132379
title: Additional file 4: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S4. Biological processes (BP) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 162Â kb)
DOI: 10.6084/m9.figshare.7132403
title: Additional file 5: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S5. Cellular component (CC) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 34Â kb)
DOI: 10.5281/zenodo.10049831
title: AFM-ice-Au(111)-monolayer

description: Machine learning dataset of probe particle model CO-tip atomic force microscopy (AFM) simulation images of monolayer ice clusters on the Au(111) surface and the corresponding atomic structure files.
The dataset consists of a total of 2050 different structures which are divided into training, validation, and test sets as 1640/122/288, and for each structure the simulations are performed 10 times with different randomized simulation parameters to yield a total of 20500 simulations. Each simulation consist of 15 images at different tip-sample distances at 0.1Å step.
The dataset is saved in a compressed .tar.gz archive. The decompressed archive has samples stored in the webdataset shard format. Each shard is a tar file with a number of samples. The tar files are named in the format `Ice-K-{param}_{set}_{shard}.tar`, where {param} number stands for the different sets of randomized simulation parameters, {set} stands for either train, validation, or test set, and {shard} is the shard number.
Each sample consists of a number of AFM simulation images and an xyz structure file. The image files are named in the format `{x}.{y}.png`, where {x} is the sample number, {y} is the index for the different height slices in the simulations. The height slices are numbered from 0 to 14, such that 0 is the farthest distance and 14 is the closest distance. Similarly, the corresponding xyz structure files are named `{x}.xyz`. The comment line (second line) in the xyz files has information about the parameters used for in the simulation for the sample.
The ice structures were obtained from a neural-network potential optimization, and subsequently the Hartree potentials for the structures were obtained through a density functional theory calculation using the optB86b-vdW density functional in Vienna Ab-initio Simulation Package. The AFM simulations utilize the Lennard-Jones force field for the Pauli repulsion and van der Waals interactions and tip convolution with the Hartree potential for the electrostatic interaction.
DOI: 10.5281/zenodo.10049832
title: AFM-ice-Au(111)-monolayer

description: Machine learning dataset of probe particle model CO-tip atomic force microscopy (AFM) simulation images of monolayer ice clusters on the Au(111) surface and the corresponding atomic structure files.
The dataset consists of a total of 2050 different structures which are divided into training, validation, and test sets as 1640/122/288, and for each structure the simulations are performed 10 times with different randomized simulation parameters to yield a total of 20500 simulations. Each simulation consist of 15 images at different tip-sample distances at 0.1Å step.
The dataset is saved in a compressed .tar.gz archive. The decompressed archive has samples stored in the webdataset shard format. Each shard is a tar file with a number of samples. The tar files are named in the format `Ice-K-{param}_{set}_{shard}.tar`, where {param} number stands for the different sets of randomized simulation parameters, {set} stands for either train, validation, or test set, and {shard} is the shard number.
Each sample consists of a number of AFM simulation images and an xyz structure file. The image files are named in the format `{x}.{y}.png`, where {x} is the sample number, {y} is the index for the different height slices in the simulations. The height slices are numbered from 0 to 14, such that 0 is the farthest distance and 14 is the closest distance. Similarly, the corresponding xyz structure files are named `{x}.xyz`. The comment line (second line) in the xyz files has information about the parameters used for in the simulation for the sample.
The ice structures were obtained from a neural-network potential optimization, and subsequently the Hartree potentials for the structures were obtained through a density functional theory calculation using the optB86b-vdW density functional in Vienna Ab-initio Simulation Package. The AFM simulations utilize the Lennard-Jones force field for the Pauli repulsion and van der Waals interactions and tip convolution with the Hartree potential for the electrostatic interaction.
DOI: 10.6084/m9.figshare.7132415
title: Additional file 6: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S6. Molecular function (MF) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.7132544
title: Additional file 8: of Genes significantly associated with lineage II food isolates of Listeria monocytogenes

description: List of plasmids downloaded from Genbank. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7132403.v1
title: Additional file 5: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S5. Cellular component (CC) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.20761520
title: Additional file 2 of Maternal obesity alters methylation level of cytosine in CpG island for epigenetic inheritance in fetal umbilical cord blood

description: Additional file 2: Table S2. Proportions of total methylated cytosine in the mCpG, mCHG and mCHH
DOI: 10.6084/m9.figshare.21285879
title: Additional file 11 of Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

description: Additional file 11. qPCR Primer list.
DOI: 10.6084/m9.figshare.20761520.v1
title: Additional file 2 of Maternal obesity alters methylation level of cytosine in CpG island for epigenetic inheritance in fetal umbilical cord blood

description: Additional file 2: Table S2. Proportions of total methylated cytosine in the mCpG, mCHG and mCHH
DOI: 10.6084/m9.figshare.21285885.v1
title: Additional file 2 of Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

description: Additional file 2. 1261 Differentially expressed genes between the WT and AF1_FFF uterus on GD3.