cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20604824.v2
title: Practical Network Modeling via Tapered Exponential-Family Random Graph Models

description: Exponential-family Random Graph Models (ERGMs) have long been at the forefront of the analysis of relational data. The exponential-family form allows complex network dependencies to be represented. Models in this class are interpretable, flexible and have a strong theoretical foundation. The availability of powerful user-friendly open-source software allows broad accessibility and use. However, ERGMs sometimes suffer from a serious condition known as near-degeneracy, in which the model exhibits unrealistic probabilistic behavior or a severe lack-of-fit to real network data. Recently, Fellows and Handcock proposed a new model class, the Tapered ERGM, which circumvents the issue of near-degeneracy while maintaining the desirable features of ERGMs. However, the question of how to determine the proper amount of tapering needed for any model was heretofore left unanswered. This article develops a new methodology for how to determine the necessary level of tapering and as such provides a new approach to inference for the Tapered ERGM class. Noting that a Tapered ERGM can always be made nondegenerate, we offer data-driven approaches for determining the amount of tapering necessary. The mean-value parameter estimates are unaffected by tapering, and we show that the natural parameter estimates are numerically weakly varying by the level of tapering. We then apply the Tapered ERGM to two published networks to demonstrate its effectiveness in cases where typical ERGMs fail and present the case for Tapered ERGMs replacing ERGMs entirely.
DOI: 10.6084/m9.figshare.20604824.v1
title: Practical Network Modeling via Tapered Exponential-family Random Graph Models

description: Exponential-family Random Graph Models (ERGMs) have long been at the forefront of the analysis of relational data. The exponential-family form allows complex network dependencies to be represented. Models in this class are interpretable, flexible and have a strong theoretical foundation. The availability of powerful user-friendly open-source software allows broad accessibility and use. However, ERGMs sometimes suffer from a serious condition known as near-degeneracy, in which the model exhibits unrealistic probabilistic behavior or a severe lack-of-fit to real network data. Recently, Fellows and Handcock (2017) proposed a new model class, the Tapered ERGM, which circumvents the issue of near-degeneracy while maintaining the desirable features of ERGMs. However, the question of how to determine the proper amount of tapering needed for any model was heretofore left unanswered. This paper develops a new methodology for how to determine the necessary level of tapering and as such provides a new approach to inference for the Tapered ERGM class. Noting that a Tapered ERGM can always be made non-degenerate, we offer data-driven approaches for determining the amount of tapering necessary. The mean-value parameter estimates are unaffected by tapering, and we show that the natural parameter estimates are numerically weakly varying by the level of tapering. We then apply the Tapered ERGM to two published networks to demonstrate its effectiveness in cases where typical ERGMs fail and present the case for Tapered ERGMs replacing ERGMs entirely.
DOI: 10.6084/m9.figshare.20013392.v2
title: Both age and social environment shape the phenotype of ant workers

description: The aim of this study was to disentangle the effect of caste and age on ant physiology by analysing their metabolome and proteome. For this purpose, we designed an experiment with four groups : young foragers (Y.F), old foragers (O.F), young nest-workers (Y.NW) and old nest-workers (O.NW). <br> We provide raw proteomics and metabolomics data, data after curation (as used for the statistical analyses); part of the statistical analysis and relevant references for the biologocial processes involved. <br> This dataset is associated with a research article :
DOI: 10.6084/m9.figshare.20102231
title: CUBN variants and eGFR association

description: This is a link to Supplementary tables. (Uglebjerg et al.).
DOI: 10.6084/m9.figshare.20102231.v2
title: CUBN variants and eGFR association

description: This is a link to summary data files (Main and Supplementary summary results tables) for the "CUBN genetic variants and association with eGFR" study (Uglebjerg et al.).
DOI: 10.6084/m9.figshare.20102231.v3
title: CUBN variants and eGFR association

description: This is a link to Supplementary tables. (Uglebjerg et al.).
DOI: 10.5517/ccdc.csd.cc28qk0l
title: CCDC 2107039: Experimental Crystal Structure Determination

description: Related Article: Peng-Bo Jin, Ke-Xin Yu, Qian-Cheng Luo, Ye-Ye Liu, Yuan-Qi Zhai, Yan-Zhen Zheng|2022|Angew.Chem.,Int.Ed.|61|e202203285|doi:10.1002/anie.202203285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2966d4
title: CCDC 2121125: Experimental Crystal Structure Determination

description: Related Article: Peng-Bo Jin, Ke-Xin Yu, Qian-Cheng Luo, Ye-Ye Liu, Yuan-Qi Zhai, Yan-Zhen Zheng|2022|Angew.Chem.,Int.Ed.|61|e202203285|doi:10.1002/anie.202203285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2966f5
title: CCDC 2121126: Experimental Crystal Structure Determination

description: Related Article: Peng-Bo Jin, Ke-Xin Yu, Qian-Cheng Luo, Ye-Ye Liu, Yuan-Qi Zhai, Yan-Zhen Zheng|2022|Angew.Chem.,Int.Ed.|61|e202203285|doi:10.1002/anie.202203285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc298wr7
title: CCDC 2123709: Experimental Crystal Structure Determination

description: Related Article: Peng-Bo Jin, Ke-Xin Yu, Qian-Cheng Luo, Ye-Ye Liu, Yuan-Qi Zhai, Yan-Zhen Zheng|2022|Angew.Chem.,Int.Ed.|61|e202203285|doi:10.1002/anie.202203285
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27fdjm
title: CCDC 2068460: Experimental Crystal Structure Determination

description: Related Article: Yang Liu, Hongyan Liu, Xiaolei Shi, Hui Yan, Wenxiao Guo, Shufang Wang, Xiaoxue Ma, Lu Zhang, Lingqian Kong, Guifang Chen, Xiuping Ju, Xia Li, Yan Yang, Hongjie Zhu, Yunwu Li, Fangna Dai, Hongguo Hao|2022|Inorg.Chem.|61|15880|doi:10.1021/acs.inorgchem.2c01848
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsrrn
title: CCDC 2168752: Experimental Crystal Structure Determination

description: Related Article: Huajian Zhu, Jiang Wang, Yunfu Lu, Vadim A. Soloshonok, Lefu Lan, Jinyi Xu, Hong Liu|2022|J.Org.Chem.|87|12900|doi:10.1021/acs.joc.2c01481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1n7r2q
title: CCDC 1526783: Experimental Crystal Structure Determination

description: Related Article: Huajian Zhu, Jiang Wang, Yunfu Lu, Vadim A. Soloshonok, Lefu Lan, Jinyi Xu, Hong Liu|2022|J.Org.Chem.|87|12900|doi:10.1021/acs.joc.2c01481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7186550
title: Used Coordinates of Rana temporaria from Spain .

description: Distribution data of Rana temporaria used in the paper: <strong>Surviving on the edge: present and future effects of climate warming on the common frog (Rana temporaria) population in the Montseny massif (NE Iberia).</strong>
DOI: 10.5281/zenodo.7186549
title: Used Coordinates of Rana temporaria from Spain .

description: Distribution data of Rana temporaria used in the paper: <strong>Surviving on the edge: present and future effects of climate warming on the common frog (Rana temporaria) population in the Montseny massif (NE Iberia).</strong>
DOI: 10.6084/m9.figshare.21312366
title: Patterns of Scholarly Communication in Global Information Retrieval Research: A bibliometric analysis (1954-2021)

description: <strong>Patterns of Scholarly Communication in Global Information Retrieval Research: A bibliometric analysis (1954-2021)</strong>
DOI: 10.6084/m9.figshare.21312366.v1
title: Patterns of Scholarly Communication in Global Information Retrieval Research: A bibliometric analysis (1954-2021)

description: <strong>Patterns of Scholarly Communication in Global Information Retrieval Research: A bibliometric analysis (1954-2021)</strong>
DOI: 10.6084/m9.figshare.19786912
title: How do medical students learn about SDH in the community? A qualitative study with a realist approach

description: The need to learn social determinants of health (SDH) is increasing in disparate societies, but educational interventions are complex and learning mechanisms are unclear. Therefore, this study used a realist approach to identify SDH learning patterns, namely context (C), mechanism (M), and outcomes (O) in communities. A 4-week clinical practice program was conducted for 5<sup>th</sup>- and 6<sup>th</sup>-year medical students in Japan. The program included SDH lectures and group activities to explore cases linked to SDH in the community. The medical students' structural reflection reports for learning SDH were thematically analyzed through CMO perspectives. First, medical students anticipated the concept of SDH and participated in a community in which a social model was central. They then transformed their perspective through observational learning and explanations from role models. Second, medical students’ confrontation of contradictions in the medical model triggered integrated explanations of solid facts. Third, conceptual understanding of SDH was deepened through comparison and verbalization of concrete experiences in multiple regions. Fourth, empathy for lay people was fostered by participating from a non-authoritative position, which differed from that in medical settings. Medical students can learn about the connections between society and medicine through four types of SDH learning patterns.
DOI: 10.6084/m9.figshare.20009504
title: The impact of clinical uncertainty in the graduate medical education (GME) learning environment: A mixed-methods study

description: Uncertainty is ubiquitous in medicine. Studies link intolerance of uncertainty to burnout, ineffective communication, cognitive bias, and inappropriate resource use. Little is known about how uncertainty manifests in the clinical learning environment. We aimed to explore the perceptions and experiences of uncertainty among residents and attendings. We conducted a mixed-methods study including a survey, semi-structured interviews, and ethnographic observations during rounds with residents and attendings at an academic medical center. The survey included three validated instruments: Physicians’ Reaction to Uncertainty Scale; Maslach Burnout Inventory 2-item; and Educational Climate Inventory. 35/60 (58%) of eligible residents and 14/21 (67%) attendings completed the survey. Residents reported higher anxiety due to uncertainty than attendings, higher concern about bad outcomes, and greater reluctance to disclose uncertainty to patients. Residents reported increased symptoms of burnout (<i>p</i> &lt; .05). Perceiving the learning environment as more competitive correlated with reluctance to disclose uncertainty (<i>r</i> = −0.44; <i>p</i> &lt; .01). Qualitative themes included: recognizing and facing uncertainty, and consequences for the learning environment. Observations revealed senior clinicians have greater comfort acknowledging uncertainty. Medical curricula should be developed to promote recognition and acknowledgement of uncertainty. Greater acknowledgement of uncertainty, specifically by attendings and senior residents, may positively impact the clinical learning environment.
DOI: 10.6084/m9.figshare.20009504.v1
title: The impact of clinical uncertainty in the graduate medical education (GME) learning environment: A mixed-methods study

description: Uncertainty is ubiquitous in medicine. Studies link intolerance of uncertainty to burnout, ineffective communication, cognitive bias, and inappropriate resource use. Little is known about how uncertainty manifests in the clinical learning environment. We aimed to explore the perceptions and experiences of uncertainty among residents and attendings. We conducted a mixed-methods study including a survey, semi-structured interviews, and ethnographic observations during rounds with residents and attendings at an academic medical center. The survey included three validated instruments: Physicians’ Reaction to Uncertainty Scale; Maslach Burnout Inventory 2-item; and Educational Climate Inventory. 35/60 (58%) of eligible residents and 14/21 (67%) attendings completed the survey. Residents reported higher anxiety due to uncertainty than attendings, higher concern about bad outcomes, and greater reluctance to disclose uncertainty to patients. Residents reported increased symptoms of burnout (<i>p</i> &lt; .05). Perceiving the learning environment as more competitive correlated with reluctance to disclose uncertainty (<i>r</i> = −0.44; <i>p</i> &lt; .01). Qualitative themes included: recognizing and facing uncertainty, and consequences for the learning environment. Observations revealed senior clinicians have greater comfort acknowledging uncertainty. Medical curricula should be developed to promote recognition and acknowledgement of uncertainty. Greater acknowledgement of uncertainty, specifically by attendings and senior residents, may positively impact the clinical learning environment.
DOI: 10.6084/m9.figshare.19786912.v1
title: How do medical students learn about SDH in the community? A qualitative study with a realist approach

description: The need to learn social determinants of health (SDH) is increasing in disparate societies, but educational interventions are complex and learning mechanisms are unclear. Therefore, this study used a realist approach to identify SDH learning patterns, namely context (C), mechanism (M), and outcomes (O) in communities. A 4-week clinical practice program was conducted for 5<sup>th</sup>- and 6<sup>th</sup>-year medical students in Japan. The program included SDH lectures and group activities to explore cases linked to SDH in the community. The medical students' structural reflection reports for learning SDH were thematically analyzed through CMO perspectives. First, medical students anticipated the concept of SDH and participated in a community in which a social model was central. They then transformed their perspective through observational learning and explanations from role models. Second, medical students’ confrontation of contradictions in the medical model triggered integrated explanations of solid facts. Third, conceptual understanding of SDH was deepened through comparison and verbalization of concrete experiences in multiple regions. Fourth, empathy for lay people was fostered by participating from a non-authoritative position, which differed from that in medical settings. Medical students can learn about the connections between society and medicine through four types of SDH learning patterns.
DOI: 10.5281/zenodo.7186566
title: Appendix to Pescarini, Diego. 2022. Expletive Subject Clitics in Northern Italo-Romance. Languages 7

description: This .csv file contains georeferenced data on approx. 350 Italo-Romance data points gathered from Manzini & Savoia 2005 and the ASIt database.
DOI: 10.5281/zenodo.7186565
title: Appendix to Pescarini, Diego. 2022. Expletive Subject Clitics in Northern Italo-Romance. Languages 7

description: This .csv file contains georeferenced data on approx. 350 Italo-Romance data points gathered from Manzini & Savoia 2005 and the ASIt database.
DOI: 10.5281/zenodo.6412569
title: Data about the aquatic insects drift in Xingu River

description: The drift movement consists of the displacement of the organisms inside the water which allows its locomotion. This movement will result in a variation of the communities of organisms along the river, generating patterns. Based on this, we tested the hypotheses a) the movement of organisms along an upstream-downstream gradient will result in a pattern of nesteness distribution of organisms in aquatic insect communities; b) there will be an increase in the number of individuals and genera as we approach the most downstream point. The present study was carried out in seven sampling points distributed along the Xingu River. The sampling occurred at night in the central area of the river. The distribution of genera along the river remained constant. A nesteness distribution of the communities in the upstream-downstream gradient was not observed. Based on the results it is possible to visualize that the dispersion movement generates a nestedness of the genera downstream of the river, occurring a confluence for the last sampling point. The organisms are carried by the flow of the water stream and are influenced by the characteristics of the water body adapting to the type of environment in which they are located.
DOI: 10.5281/zenodo.6412568
title: Data about the aquatic insects drift in Xingu River

description: The drift movement consists of the displacement of the organisms inside the water which allows its locomotion. This movement will result in a variation of the communities of organisms along the river, generating patterns. Based on this, we tested the hypotheses a) the movement of organisms along an upstream-downstream gradient will result in a pattern of nesteness distribution of organisms in aquatic insect communities; b) there will be an increase in the number of individuals and genera as we approach the most downstream point. The present study was carried out in seven sampling points distributed along the Xingu River. The sampling occurred at night in the central area of the river. The distribution of genera along the river remained constant. A nesteness distribution of the communities in the upstream-downstream gradient was not observed. Based on the results it is possible to visualize that the dispersion movement generates a nestedness of the genera downstream of the river, occurring a confluence for the last sampling point. The organisms are carried by the flow of the water stream and are influenced by the characteristics of the water body adapting to the type of environment in which they are located.
DOI: 10.5281/zenodo.7186623
title: Data about the aquatic insects drift in Xingu River

description: The drift movement consists of the displacement of the organisms inside the water which allows its locomotion. This movement will result in a variation of the communities of organisms along the river, generating patterns. Based on this, we tested the hypotheses a) the movement of organisms along an upstream-downstream gradient will result in a pattern of nesteness distribution of organisms in aquatic insect communities; b) there will be an increase in the number of individuals and genera as we approach the most downstream point. The present study was carried out in seven sampling points distributed along the Xingu River. The sampling occurred at night in the central area of the river. The distribution of genera along the river remained constant. A nesteness distribution of the communities in the upstream-downstream gradient was not observed. Based on the results it is possible to visualize that the dispersion movement generates a nestedness of the genera downstream of the river, occurring a confluence for the last sampling point. The organisms are carried by the flow of the water stream and are influenced by the characteristics of the water body adapting to the type of environment in which they are located.
DOI: 10.17632/xht5wkyjdc.1
title: Supplementary Data Excel

description: This data is original data of paper entitle "Iron geochemistry in surface sediments of the subtropical northern South China Sea and a comparison with the temperate East China Sea".
DOI: 10.17632/ws6hjmjmh7.1
title: Spanish User Story Dataset

description: Datasets utilizados en el artículo Análisis Automático de Indicadores de Calidad de Historias de Usuario mediante Medidas Difusas, publicado en CONAIISI 2021
DOI: 10.17632/ws6hjmjmh7.2
title: Spanish User Story Dataset

description: Datasets utilizados en el artículo Análisis Automático de Indicadores de Calidad de Historias de Usuario mediante Medidas Difusas, publicado en CONAIISI 2022
DOI: 10.17632/2tfvzrmhzs.1
title: Characterisation of Hedione's derivative compounds

description: Spectroscopic analysis recorded for the identification and characterisation of the Hedione's derivative compounds during the development of a preparative methodology of a key fragrance ingredient. The data includes 1H, 13-C, and 19-F Nuclear Magnetic Resonance, FT-IR spectra, and High resolution mass reports.
DOI: 10.17632/2tfvzrmhzs.2
title: Characterisation of Hedione's derivative compounds

description: Spectroscopic analysis recorded for the identification and characterisation of the Hedione's derivative compounds during the development of a preparative methodology of a key fragrance ingredient. The data includes 1H, 13-C, and 19-F Nuclear Magnetic Resonance, FT-IR spectra, and High resolution mass reports.
DOI: 10.17632/htxj2fwwnw.1
title: Supplemental Table 3, The Reliability of Disease Severity Assessment in Psoriasis Patients of Color: Results of an Educational Intervention

description: Bootstrapped 95% Confidence Intervals for Difference in Agreement Between Dark and Light Skin Evaluation By Intra-Class Correlation Coefficient