cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6497715
title: microbeSEG dataset

description: <em>B. subtilis</em> and <em>E. coli</em> cell segmentation dataset consisting of test data annotated by three experts (<em>test</em>), data annotated manually by a single microbeSEG user within 30 minutes (<em>30min-man</em>), data annotated manually by a single microbeSEG user within 30 minutes and data annotated with microbeSEG pre-labeling with 15 minutes manual correction time (<em>30min-man_15min-pre</em>, includes the <em>30min-man</em> dataset). Images, instance segmentation masks and image-segmentation overlays are provided. All images are crops of size 320px x 320px. Annotations were made with ObiWan-Microbi. <strong>Data acquisition</strong> The phase contrast images of growing <em>B. subtilis</em> and <em>E. coli</em> colonies were acquired with a fully automated time-lapse microscope setup (TI Eclipse, Nikon, Germany) using a 100x oil immersion objective (Plan Apochromat λ Oil, N.A. 1.45, WD 170 µm, Nikon Microscopy). Time-lapse images were taken every 15 minutes for <em>B. subtilis</em> and every 20 minutes for <em>E. coli</em>. Cultivation took place inside a special microfluidic cultivation device. Resolution: 0.07μm/px for <em>B. subtilis</em> und 0.09μm/px for <em>E. coli</em>. <strong>microbeSEG import</strong> For the use with microbeSEG, create or select a new training set within the software and use the training data import functionality. Best import train data with the "train" checkbox checked, validation data with the "val" checkbox checked, and test data with the "test" checkbox checked. Since the images are already normalized, the "keep normalization" functionality can be used.
description: Please cite: Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, Hanno Scharr, Katharina Nöh, and Ralf Mikut (2022). microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation. PLoS ONE 17(11): e0277601, doi:10.1371/journal.pone.0277601.
DOI: 10.5281/zenodo.6497714
title: microbeSEG dataset

description: <em>B. subtilis</em> and <em>E. coli</em> cell segmentation dataset consisting of test data annotated by three experts (<em>test</em>), data annotated manually by a single microbeSEG user within 30 minutes (<em>30min-man</em>), data annotated manually by a single microbeSEG user within 30 minutes and data annotated with microbeSEG pre-labeling with 15 minutes manual correction time (<em>30min-man_15min-pre</em>, includes the <em>30min-man</em> dataset). Images, instance segmentation masks and image-segmentation overlays are provided. All images are crops of size 320px x 320px. Annotations were made with ObiWan-Microbi. <strong>Data acquisition</strong> The phase contrast images of growing <em>B. subtilis</em> and <em>E. coli</em> colonies were acquired with a fully automated time-lapse microscope setup (TI Eclipse, Nikon, Germany) using a 100x oil immersion objective (Plan Apochromat λ Oil, N.A. 1.45, WD 170 µm, Nikon Microscopy). Time-lapse images were taken every 15 minutes for <em>B. subtilis</em> and every 20 minutes for <em>E. coli</em>. Cultivation took place inside a special microfluidic cultivation device. Resolution: 0.07μm/px for <em>B. subtilis</em> und 0.09μm/px for <em>E. coli</em>. <strong>microbeSEG import</strong> For the use with microbeSEG, create or select a new training set within the software and use the training data import functionality. Best import train data with the "train" checkbox checked, validation data with the "val" checkbox checked, and test data with the "test" checkbox checked. Since the images are already normalized, the "keep normalization" functionality can be used.
description: Please cite: Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, Hanno Scharr, Katharina Nöh, and Ralf Mikut (2022). microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation. PLoS ONE 17(11): e0277601, doi:10.1371/journal.pone.0277601.
DOI: 10.6084/m9.figshare.21679361.v3
title: Isolation and Characterization of an HKU4-related coronavirus circulating in Malayan pangolin

description: As the mostly trafficked mammal, pangolins may play important role in coronaviruses zoonotic transmission cycle. Here, we report the circulation of a Tylonycteris bat coronavirus HKU4-related coronavirus from smuggled Malayan pangolins ( Manis javanica ), including 4 viral nucleotide positive and another 7 viral seropositives from 86 animals. Four almost identical (99%) genomes were identified and a MjHKU4r-CoV- 1 virus was isolated, which uses human dipeptidyl peptidase-4 (hDPP4) as receptor and human proteases for cell infection, and this infection is enhanced by a furin cleavage site that is absent in the bat HKU4r-CoVs. In addition, the MjHKU4r-CoV-1 spike showed higher binding affinity to the hDPP4 or wider host range than the bat HKU4-CoV. Finally, MjHKU4r-CoV-1 is productively infectious and pathogenic in human airway, intestinal organs or in hDPP4 transgenic mice. Our work highlighted the importance of pangolins as susceptible hosts of bat-related coronaviruses that poised for human emergence.
DOI: 10.6084/m9.figshare.21679361
title: Isolation and Characterization of an HKU4-related coronavirus circulating in Malayan pangolin

description: As the mostly trafficked mammal, pangolins may play important role in coronaviruses zoonotic transmission cycle. Here, we report the circulation of a Tylonycteris bat coronavirus HKU4-related coronavirus from smuggled Malayan pangolins ( Manis javanica ), including 4 viral nucleotide positive and another 7 viral seropositives from 86 animals. Four almost identical (99%) genomes were identified and a MjHKU4r-CoV- 1 virus was isolated, which uses human dipeptidyl peptidase-4 (hDPP4) as receptor and human proteases for cell infection, and this infection is enhanced by a furin cleavage site that is absent in the bat HKU4r-CoVs. In addition, the MjHKU4r-CoV-1 spike showed higher binding affinity to the hDPP4 or wider host range than the bat HKU4-CoV. Finally, MjHKU4r-CoV-1 is productively infectious and pathogenic in human airway, intestinal organs or in hDPP4 transgenic mice. Our work highlighted the importance of pangolins as susceptible hosts of bat-related coronaviruses that poised for human emergence.
DOI: 10.6084/m9.figshare.21679361.v5
title: Isolation and Characterization of an HKU4-related coronavirus circulating in Malayan pangolin

description: As the mostly trafficked mammal, pangolins may play important role in coronaviruses zoonotic transmission cycle. Here, we report the circulation of a Tylonycteris bat coronavirus HKU4-related coronavirus from smuggled Malayan pangolins ( Manis javanica ), including 4 viral nucleotide positive and another 7 viral seropositives from 86 animals. Four almost identical (99%) genomes were identified and a MjHKU4r-CoV- 1 virus was isolated, which uses human dipeptidyl peptidase-4 (hDPP4) as receptor and human proteases for cell infection, and this infection is enhanced by a furin cleavage site that is absent in the bat HKU4r-CoVs. In addition, the MjHKU4r-CoV-1 spike showed higher binding affinity to the hDPP4 or wider host range than the bat HKU4-CoV. Finally, MjHKU4r-CoV-1 is productively infectious and pathogenic in human airway, intestinal organs or in hDPP4 transgenic mice. Our work highlighted the importance of pangolins as susceptible hosts of bat-related coronaviruses that poised for human emergence.
DOI: 10.6084/m9.figshare.21679361.v4
title: Isolation and Characterization of an HKU4-related coronavirus circulating in Malayan pangolin

description: As the mostly trafficked mammal, pangolins may play important role in coronaviruses zoonotic transmission cycle. Here, we report the circulation of a Tylonycteris bat coronavirus HKU4-related coronavirus from smuggled Malayan pangolins ( Manis javanica ), including 4 viral nucleotide positive and another 7 viral seropositives from 86 animals. Four almost identical (99%) genomes were identified and a MjHKU4r-CoV- 1 virus was isolated, which uses human dipeptidyl peptidase-4 (hDPP4) as receptor and human proteases for cell infection, and this infection is enhanced by a furin cleavage site that is absent in the bat HKU4r-CoVs. In addition, the MjHKU4r-CoV-1 spike showed higher binding affinity to the hDPP4 or wider host range than the bat HKU4-CoV. Finally, MjHKU4r-CoV-1 is productively infectious and pathogenic in human airway, intestinal organs or in hDPP4 transgenic mice. Our work highlighted the importance of pangolins as susceptible hosts of bat-related coronaviruses that poised for human emergence.
DOI: 10.5281/zenodo.7404229
title: Data for "Majorana-like Coulomb spectroscopy in the absence of zero bias peaks"

description: This repository contains experimental data, scripts used for the data analysis, scripts used for the numerical calculation and the microscopy analysis for the following paper: "Majorana-like Coulomb spectroscopy in the absence of zero bias peaks". Authors: Marco Valentini, Maksim Borovkov, Elsa Prada, Sara Marti-Sanchez , Marc Botifoll , Andrea Hofmann, Jordi Arbiol, Ramon Aguado, Pablo San-Jose, Georgios Katsaros.
DOI: 10.5281/zenodo.7404228
title: Data for "Majorana-like Coulomb spectroscopy in the absence of zero bias peaks"

description: This repository contains experimental data, scripts used for the data analysis, scripts used for the numerical calculation and the microscopy analysis for the following paper: "Majorana-like Coulomb spectroscopy in the absence of zero bias peaks". Authors: Marco Valentini, Maksim Borovkov, Elsa Prada, Sara Marti-Sanchez , Marc Botifoll , Andrea Hofmann, Jordi Arbiol, Ramon Aguado, Pablo San-Jose, Georgios Katsaros.
DOI: 10.18112/openneuro.ds004253.v1.0.5
title: HCP Unrelated 100 Subset (HCP-30)
DOI: 10.13120/yzt2-zj98
title: TYTAN

description: High-resolution multichannel seismic profiles have been collected in January–March 2017 by OGS on the continental rise off the Sabrina Coast (East Antarctica). The data were acquired as part of the Italian Program of Antarctic Research (PNRA) TYTAN “Totten Glacier dynamics and Southern Ocean circulation impact on depositional processes since the Mid- to Late Cenozoic” project (PI: F. Donda-OGS) during the Australian Marine National Facility survey IN2017-V01 on board the RV Investigator. TYTAN was embedded in to the Australian project "Interactions of the Totten Glacier with the Southern Ocean through multiple glacial cycles” that aimed to understand the interaction of Totten Glacier and its ice drainage basin with the Southern Ocean during periods of warming and ice-sheet retreat in the Pleistocene and Holocene. In order to achieve these scientific objectives, three areas were identified for the geophysical and oceanographic survey: two on the continental slope and rise off Sabrina Coast and one on the continental shelf, which was not investigated because it remained covered by sea ice throughout the season. Expanded and well-preserved sedimentary successions imaged on the TYTAN seismic data highlight the potential of this region for deep ocean drilling, which will provide unprecedented history of the glaciers evolution in the Aurora Basin and their sensitivity to climate change under different background state conditions. In fact, TYTAN seismic data played a crucial role in the identification of potential drilling sites for the IODP 1002 Proposal “Totten Glacier Climate Vulnerability under varying Neogene climate conditions: Lessons for East Antarctic Ice Sheet climate sensitivity” (under review).
DOI: 10.5281/zenodo.6289804
title: Rassismus popularisieren - Anhänge 3-5

description: Anhänge 3-5 zu dem Buch: Rassismus popularisieren - Hans F. K. Günthers "Rassenkunden" in der Rezensionsliteratur 1922-1942 von Sabrina Rogahn, Campus Verlag, Frankfurt 2022. Digitalisate der Rezensionen zu den "Rassenkunden" Hans F. K. Günthers
DOI: 10.5281/zenodo.7404408
title: Rassismus popularisieren - Anhänge 2-5

description: Anhänge 2-5 zu dem Buch: Rassismus popularisieren - Hans F. K. Günthers "Rassenkunden" in der Rezensionsliteratur 1922-1942 von Sabrina Rogahn, Campus Verlag, Frankfurt 2022. Digitalisate der Rezensionen zu den "Rassenkunden" Hans F. K. Günthers
DOI: 10.5281/zenodo.6289803
title: Rassismus popularisieren - Anhänge 2-5

description: Anhänge 2-5 zu dem Buch: Rassismus popularisieren - Hans F. K. Günthers "Rassenkunden" in der Rezensionsliteratur 1922-1942 von Sabrina Rogahn, Campus Verlag, Frankfurt 2022. Digitalisate der Rezensionen zu den "Rassenkunden" Hans F. K. Günthers
DOI: 10.18112/openneuro.ds004253.v1.0.6
title: HCP Unrelated 100 Subset (HCP-30)
DOI: 10.5281/zenodo.7396773
title: Lada: Ukrainian High-Quality Female Text-to-Speech Dataset

description: The dataset has high-quality data recorded in a professional studio. Archives with a <strong>trimmed</strong> tag are having removed silence (aligned) using https://github.com/proger/uk <strong>Features</strong> Quality: high Duration: 10h37m Audio formats: OPUS/WAV Text format: JSONL (a <code>metadata.jsonl</code> file) Frequency: 16000/22050/48000 Hz
description: {"references": ["Ukrainian Text-to-Speech community,\u00a0https://t.me/speech_synthesis_uk", "Ukrainian Text-to-Speech Datasets, https://github.com/egorsmkv/ukrainian-tts-datasets"]}
DOI: 10.5281/zenodo.7396774
title: Lada: Ukrainian High-Quality Female Text-to-Speech Dataset

description: The dataset has high-quality data recorded in a professional studio. Archives with a <strong>trimmed</strong> tag are having removed silence (aligned) using https://github.com/proger/uk <strong>Features</strong> Quality: high Duration: 10h37m Audio formats: OPUS/WAV Text format: JSONL (a <code>metadata.jsonl</code> file) Frequency: 16000/22050/48000 Hz
description: {"references": ["Ukrainian Text-to-Speech community,\u00a0https://t.me/speech_synthesis_uk", "Ukrainian Text-to-Speech Datasets, https://github.com/egorsmkv/ukrainian-tts-datasets"]}
DOI: 10.18112/openneuro.ds004241.v1.0.4
title: Stereotactic Neurosurgery 7T Control Dataset (SNSX)
DOI: 10.21227/3s5k-1642
title: An EMG dataset for Arabic sign language alphabet

description: Sign languages are natural, gestural languages that use visual channel to communicate. Deaf people develop them to overcome their inability to communicate orally. Sign language interpreters bridge the gap that deaf people face in society and provide them with an equal opportunity to thrive in all environments. However, Deaf people often struggle to communicate on a daily basis, especially in public service spaces such as hospitals, post offices, and municipal buildings. Therefore, the implementation of a tool for automatic recognition of sign language is essential to allow the autonomy of deaf people. Moreover, it is difficult to provide full-time interpreters to help deaf people in all public services and administrations. Although surface electromyography (sEMG) provides an important potential technology for the detection of hand gestures, the related research in automatic SL recognition remains limited. To date, most works have focused on the recognition of hand gestures from images, videos, or gloves. The works of BEN HAJ AMOR et al. on EMG signals have shown that these multichannel signals contain rich and detailed information that can be exploited, in particular for the recognition of handshape and for the control prosthesis. Consequently, these successes represent a great step towards the recognition of gestures in sign language. We build a large database of EMG data, recorded while signing the 28 characters of the Arabic sign language alphabet. This provides a valuable resource for research into how the muscles involved in signing produce the shapes needed to form the letters of the alphabet.
DOI: 10.5517/ccdc.csd.cc297hdg
title: CCDC 2122365: Experimental Crystal Structure Determination

description: Related Article: qinghua hu|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c79vs
title: CCDC 2181775: Experimental Crystal Structure Determination

description: Related Article: zhu xiancui|2022|CSD Communication|||
description: Related Article: Xiancui Zhu, Jinqiang He, Yuanqing Yang, Shuangliu Zhou, Yun Wei, Shaowu Wang|2022|Dalton Trans.|51|13227|doi:10.1039/D2DT02053J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpz8b
title: CCDC 2195862: Experimental Crystal Structure Determination

description: Related Article: Chandrima Maitra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpz9c
title: CCDC 2195863: Experimental Crystal Structure Determination

description: Related Article: Chandrima Maitra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq09f
title: CCDC 2195894: Experimental Crystal Structure Determination

description: Related Article: Igor Litvinov|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpyvw
title: CCDC 2195849: Experimental Crystal Structure Determination

description: Related Article: Igor Litvinov|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq1rx
title: CCDC 2195939: Experimental Crystal Structure Determination

description: Related Article: PQA zhangxiuyun|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq64g
title: CCDC 2196075: Experimental Crystal Structure Determination

description: Related Article: hongtai huang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq65h
title: CCDC 2196076: Experimental Crystal Structure Determination

description: Related Article: hongtai huang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq7n0
title: CCDC 2196122: Experimental Crystal Structure Determination

description: Related Article: Ananya Saju, Justin R. Griffiths, Samantha N. MacMillan, David C. Lacy|2022|CSD Communication|||
description: Related Article: Ananya Saju, Justin R. Griffiths, Samantha N. MacMillan, David C. Lacy|2022|J.Am.Chem.Soc.|144|16761|doi:10.1021/jacs.2c08509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cqcn4
title: CCDC 2196246: Experimental Crystal Structure Determination

description: Related Article: Takashi Nishikata|2022|CSD Communication|||
description: Related Article: Yusei Nakashima, Shinya Ishimaru, Takashi Nishikata|2022|Chem.Commun.|58|11977|doi:10.1039/D2CC04796A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq9v8
title: CCDC 2196190: Experimental Crystal Structure Determination

description: Related Article: Zdenek Travnicek|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7028333
title: Data accompanying the article "Comparison of six different methods for measuring the equine hoof and recording of its three-dimensional conformation"

description: Equine hoof measurements data, to be used with https://gitlab.com/hoofstats/hoofstats. See also https://zenodo.org/record/6962789. Files: measures.py - declarative description of hoof measures using point cloud data labels Pointcloud_hoof_coordinates_MicroScribe.xlsx - the point cloud data and their description
DOI: 10.5281/zenodo.7404511
title: Code and data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?

description: Code and code data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?
description: preprint link: https://www.biorxiv.org/content/10.1101/2022.09.20.508663v1
DOI: 10.5281/zenodo.7404510
title: Code and data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?

description: Code and code data for manuscript: Is phase-dependent stability related to phase-dependent gait robustness?
description: preprint link: https://www.biorxiv.org/content/10.1101/2022.09.20.508663v1