cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12689109
title: Dataset for the project "Identifying disease signatures of neurodegenerative dementias: a focus on autoimmunity and inflammation" Italian Ministry of Health, Italy, Ricerca Finalizzata (Grant RF-2019-12369272)

description: Dataset for the project “Identifying disease signatures of neurodegenerative dementias: a focus on autoimmunity and inflammation” Italian Ministry of Health, Italy, Ricerca Finalizzata (Grant RF-2019-12369272)

Specific Aim 1

To identify an immune-system genetic profile associated with disease onset, clinical phenotype and progression in AD and FTLD patients

Specific Aim 2

To identify an inflammatory/autoimmune biochemical signature associated with disease onset, clinical phenotype and progression in AD and FTLD patients

Specific Aim 3

To study the molecular mechanism involved in anti-GluA3 mediated synaptic, cellular and functional dysfunctions leading to neurodegeneration

The present dataset contains the following folders:



Aim1: 



gVCF: a folder containing all gVCF files for each sample sequenced

Correspondence: a dataset (excel file) containing sample name, group and corresponding g.vcf file name

Gene selected for panel design: an excel file with the 50 genes included in the NGS panel

RawData-RF2019_variants: an excel file containing results included in an article published in IJMS (Int J Mol Sci. 2024; 25(13):7457. doi: 10.3390/ijms25137457) already openly available in the Zenodo Data Repository at doi: 10.5281/zenodo.11659282.





Aim2: 



NTA_file: a folder containing Raw NTA file for each sample (from these files we extracted EV concentration and size)

Anti-GluA3_analyses: a dataset (excel file) containing ID sample, diagnosis, group, Anti-GluA3 values from ELISA assay

Biochemical_analyses_UO1: a dataset (excel file) containing sample, group, Raw NTA File name and MHC-II levels from ELISA assay

Biochemical_analyses_UO2: a dataset (excel file) containing sample, group, cytokine/chemokine (Eotaxin, Eotaxin-3, IFN gamma, IL-1 beta, IL-6, IL-8, IL-10, IL-12p70, IP-10, MCP-1, MIP-1 beta, TARC, TNF alpha and IL-17A) levels from Luminex assay





Aim3: Results from aim 3 have been included in an article published in Brain, Behavior and Immunity (Brain Behav Immun. 2024 May;118:380-397. doi: 10.1016/j.bbi.2024.03.018).



Behaviour: a folder containing datasets and raw data regarding different batches of behavioural analyses

Biochemistry: a folder containing raw data regarding different western blot analyses

Spine_Morphology: a folder containing datasets and raw data regarding spine morphology analyses



Users must clarify how they intend to use data here uploaded and whether the research protocol has been approved by an Ethics committee. Data on unpublished results will be available, under the same restrictions, after publication.
DOI: 10.5281/zenodo.12689110
title: Dataset for the project "Identifying disease signatures of neurodegenerative dementias: a focus on autoimmunity and inflammation" Italian Ministry of Health, Italy, Ricerca Finalizzata (Grant RF-2019-12369272)

description: Dataset for the project “Identifying disease signatures of neurodegenerative dementias: a focus on autoimmunity and inflammation” Italian Ministry of Health, Italy, Ricerca Finalizzata (Grant RF-2019-12369272)

Specific Aim 1

To identify an immune-system genetic profile associated with disease onset, clinical phenotype and progression in AD and FTLD patients

Specific Aim 2

To identify an inflammatory/autoimmune biochemical signature associated with disease onset, clinical phenotype and progression in AD and FTLD patients

Specific Aim 3

To study the molecular mechanism involved in anti-GluA3 mediated synaptic, cellular and functional dysfunctions leading to neurodegeneration

The present dataset contains the following folders:



Aim1: 



gVCF: a folder containing all gVCF files for each sample sequenced

Correspondence: a dataset (excel file) containing sample name, group and corresponding g.vcf file name

Gene selected for panel design: an excel file with the 50 genes included in the NGS panel

RawData-RF2019_variants: an excel file containing results included in an article published in IJMS (Int J Mol Sci. 2024; 25(13):7457. doi: 10.3390/ijms25137457) already openly available in the Zenodo Data Repository at doi: 10.5281/zenodo.11659282.





Aim2: 



NTA_file: a folder containing Raw NTA file for each sample (from these files we extracted EV concentration and size)

Anti-GluA3_analyses: a dataset (excel file) containing ID sample, diagnosis, group, Anti-GluA3 values from ELISA assay

Biochemical_analyses_UO1: a dataset (excel file) containing sample, group, Raw NTA File name and MHC-II levels from ELISA assay

Biochemical_analyses_UO2: a dataset (excel file) containing sample, group, cytokine/chemokine (Eotaxin, Eotaxin-3, IFN gamma, IL-1 beta, IL-6, IL-8, IL-10, IL-12p70, IP-10, MCP-1, MIP-1 beta, TARC, TNF alpha and IL-17A) levels from Luminex assay





Aim3: Results from aim 3 have been included in an article published in Brain, Behavior and Immunity (Brain Behav Immun. 2024 May;118:380-397. doi: 10.1016/j.bbi.2024.03.018).



Behaviour: a folder containing datasets and raw data regarding different batches of behavioural analyses

Biochemistry: a folder containing raw data regarding different western blot analyses

Spine_Morphology: a folder containing datasets and raw data regarding spine morphology analyses



Users must clarify how they intend to use data here uploaded and whether the research protocol has been approved by an Ethics committee. Data on unpublished results will be available, under the same restrictions, after publication.
DOI: 10.15468/dl.x6dyuy
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma oligantha Trimen"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154805-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b53spn
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma euchroma Valeton"
 ]
}

 The dataset includes 30 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154767-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3by3gk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pseudominua peruviana Roewer, 1963"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154766-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25452/figshare.plus.25498372
title: Distribution and Aggregation of Microparticles in Upper-Ocean Turbulence Dataset

description: Microplastic pollution poses a significant environmental threat to marine ecosystems globally. Understanding the distribution and aggregation of microplastics in ocean turbulence is crucial for developing effective mitigation strategies. This dataset offers comprehensive access to nine high-fidelity direct numerical simulations cases characterized by turbulent flow field and Lagrangian point particles, representing conditions observed in the upper ocean layer. The dataset comprises a range of physical parameters facilitating in-depth exploration and modeling of the flow dynamics linked to microplastics and biogenic particles. This includes quantifying particle collisions and coalescence, analyzing aggregate properties such as motion and composition, and tracking the trajectories of microparticles. The present openly accessible repository aims to support research efforts in modelling and predicting the impact of microplastics on marine environments.The simulations, are systematically organized into individual cases, each assigned to dedicated folders for easy access and data processing. Within each case folder (9 in total), subfolders are allocated for the flow field, particles, ) and aggregates data. A README.txt file in each case folder provides essential information, including main parameters, dimensionless numbers, file organization, and instructions for running the solver with those parameters. Fundamental outputs, such as flow field mesh and velocity and particle characteristics, are present in Flow_folder and Prts_folder for each instantaneous file spaced uniformly in time. Derived quantities, including aggregate properties, are stored in Agg_folder in csv format. The Coll_coal_folder contains simulation status files detailing the temporal progression of collision and coalescence events.
DOI: 10.25452/figshare.plus.25498372.v1
title: Distribution and Aggregation of Microparticles in Upper-Ocean Turbulence Dataset

description: Microplastic pollution poses a significant environmental threat to marine ecosystems globally. Understanding the distribution and aggregation of microplastics in ocean turbulence is crucial for developing effective mitigation strategies. This dataset offers comprehensive access to nine high-fidelity direct numerical simulations cases characterized by turbulent flow field and Lagrangian point particles, representing conditions observed in the upper ocean layer. The dataset comprises a range of physical parameters facilitating in-depth exploration and modeling of the flow dynamics linked to microplastics and biogenic particles. This includes quantifying particle collisions and coalescence, analyzing aggregate properties such as motion and composition, and tracking the trajectories of microparticles. The present openly accessible repository aims to support research efforts in modelling and predicting the impact of microplastics on marine environments.The simulations, are systematically organized into individual cases, each assigned to dedicated folders for easy access and data processing. Within each case folder (9 in total), subfolders are allocated for the flow field, particles, ) and aggregates data. A README.txt file in each case folder provides essential information, including main parameters, dimensionless numbers, file organization, and instructions for running the solver with those parameters. Fundamental outputs, such as flow field mesh and velocity and particle characteristics, are present in Flow_folder and Prts_folder for each instantaneous file spaced uniformly in time. Derived quantities, including aggregate properties, are stored in Agg_folder in csv format. The Coll_coal_folder contains simulation status files detailing the temporal progression of collision and coalescence events.
DOI: 10.15468/dl.4s57hx
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma elata Roxb."
 ]
}

 The dataset includes 54 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154765-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz5u8c
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma coriacea Mangaly & M.Sabu"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154760-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbeyre
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma comosa Roxb."
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154759-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve49by
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma ceratotheca K.Schum."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154752-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9f6u2k
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curcuma amarissima Roscoe"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154738-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11576195
title: Trento 1936 - Building 2412

description: Coordinates: N/A Length: 19.27 mWidth: 7.72 mHeight: 25.39 mPoints: 12 Vertices: 60 Primitives: 20
DOI: 10.5281/zenodo.11565234
title: Trento 1851 - Building 598

description: Coordinates: N/A Length: 11.03 mWidth: 13.35 mHeight: 7.99 mPoints: 8 Vertices: 36 Primitives: 12
DOI: 10.5281/zenodo.11569353
title: Trento 1911 - Building 1464

description: Coordinates: N/A Length: 10.88 mWidth: 11.24 mHeight: 8.7 mPoints: 10 Vertices: 48 Primitives: 16
DOI: 10.5281/zenodo.11576194
title: Trento 1936 - Building 2412

description: Coordinates: N/A Length: 19.27 mWidth: 7.72 mHeight: 25.39 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
Filename.glb.obj.xmlbuilding_2412.glbLinkbuilding_2412.objLink11576194_edm.xmlLink11576194_metsmods.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.12545908
title: Trento 1936 - Building 2412

description: Coordinates: N/A Length: 19.27 mWidth: 7.72 mHeight: 25.39 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
Filename.glb.objbuilding_2412.objLinkbuilding_2412.glbLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.
DOI: 10.5281/zenodo.12689152
title: Trento 1936 - Building 2412

description: Coordinates: N/A Length: 19.27 mWidth: 7.72 mHeight: 25.39 mPoints: 12 Vertices: 60 Primitives: 20 Main Files:
Filename.glb.obj.xmlbuilding_2412.glbLinkbuilding_2412.objLink11576194_edm.xmlLink11576194_metsmods.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.11563225
title: Trento 1851 - Building 973

description: Coordinates: N/A Length: 18.09 mWidth: 14.2 mHeight: 21.79 mPoints: 18 Vertices: 96 Primitives: 32
DOI: 10.5281/zenodo.11564553
title: Trento 1851 - Building 31

description: Coordinates: N/A Length: 19.43 mWidth: 13.71 mHeight: 14.24 mPoints: 14 Vertices: 72 Primitives: 24
DOI: 10.5281/zenodo.11565233
title: Trento 1851 - Building 598

description: Coordinates: N/A Length: 11.03 mWidth: 13.35 mHeight: 7.99 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.obj.xmlbuilding_598.glbLinkbuilding_598.objLink11565233_edm.xmlLink11565233_metsmods.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.11569352
title: Trento 1911 - Building 1464

description: Coordinates: N/A Length: 10.88 mWidth: 11.24 mHeight: 8.7 mPoints: 10 Vertices: 48 Primitives: 16 Main Files:
Filename.glb.obj.xmlbuilding_1464.glbLinkbuilding_1464.objLink11569352_metsmods.xmlLink11569352_edm.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.12531617
title: Trento 1851 - Building 31

description: Coordinates: N/A Length: 19.43 mWidth: 13.71 mHeight: 14.24 mPoints: 14 Vertices: 72 Primitives: 24 Main Files:
Filename.glb.objbuilding_31.glbLinkbuilding_31.objLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.
DOI: 10.5281/zenodo.12532823
title: Trento 1851 - Building 598

description: Coordinates: N/A Length: 11.03 mWidth: 13.35 mHeight: 7.99 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.objbuilding_598.glbLinkbuilding_598.objLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.
DOI: 10.5281/zenodo.12537975
title: Trento 1911 - Building 1464

description: Coordinates: N/A Length: 10.88 mWidth: 11.24 mHeight: 8.7 mPoints: 10 Vertices: 48 Primitives: 16 Main Files:
Filename.glb.objbuilding_1464.glbLinkbuilding_1464.objLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.
DOI: 10.5281/zenodo.12689156
title: Trento 1911 - Building 1464

description: Coordinates: N/A Length: 10.88 mWidth: 11.24 mHeight: 8.7 mPoints: 10 Vertices: 48 Primitives: 16 Main Files:
Filename.glb.obj.xmlbuilding_1464.glbLinkbuilding_1464.objLink11569352_metsmods.xmlLink11569352_edm.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.12689167
title: Trento 1851 - Building 598

description: Coordinates: N/A Length: 11.03 mWidth: 13.35 mHeight: 7.99 mPoints: 8 Vertices: 36 Primitives: 12 Main Files:
Filename.glb.obj.xmlbuilding_598.glbLinkbuilding_598.objLink11565233_edm.xmlLink11565233_metsmods.xmlLinkThumbnails:
Perspective1000x1000512x512256x256128x128Perspective 1LinkLinkLinkLinkPerspective 2LinkLinkLinkLinkPerspective 3LinkLinkLinkLinkPerspective 4LinkLinkLinkLinkPerspective TopLinkLinkLinkLinkChangelog:   - v0.0.2: Thumbnails added, Description updated with Link Tables.  - v0.0.3: Added XMLs for Europeana Data Model (EDM) and MetsMods.
DOI: 10.5281/zenodo.11248438
title: Sion 1840 - Building 532 (LoD-1)

description: Coordinates: N/A Length: 14.23 mWidth: 14.21 mHeight: 11.72 mVertices: 54 Primitives: 32  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.
DOI: 10.5281/zenodo.11484150
title: Sion 1840 - Building 532 (LoD-1)

description: Coordinates: N/A Length: 14.23 mWidth: 14.21 mHeight: 11.72 mVertices: 54 Primitives: 32  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.Main Files:
Filename.mtl.obj.glb0___LoD1__id-532.objLink0___LoD1__id-532.mtlLink0___LoD1__id-532.glbLinkThumbnails:
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DOI: 10.5281/zenodo.11571387
title: Trento 1911 - Building 1608

description: Coordinates: N/A Length: 25.22 mWidth: 16.05 mHeight: 47.09 mPoints: 20 Vertices: 120 Primitives: 40
DOI: 10.5281/zenodo.11575509
title: Trento 1936 - Building 455

description: Coordinates: N/A Length: 20.28 mWidth: 15.54 mHeight: 30.62 mPoints: 20 Vertices: 108 Primitives: 36 Main Files:
Filename.glb.obj.xmlbuilding_455.objLinkbuilding_455.glbLink11575509_metsmods.xmlLink11575509_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11575510
title: Trento 1936 - Building 455

description: Coordinates: N/A Length: 20.28 mWidth: 15.54 mHeight: 30.62 mPoints: 20 Vertices: 108 Primitives: 36
DOI: 10.5281/zenodo.12529271
title: Trento 1851 - Building 973

description: Coordinates: N/A Length: 18.09 mWidth: 14.2 mHeight: 21.79 mPoints: 18 Vertices: 96 Primitives: 32 Main Files:
Filename.glb.objbuilding_973.glbLinkbuilding_973.objLinkThumbnails:
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DOI: 10.5281/zenodo.12544574
title: Trento 1936 - Building 455

description: Coordinates: N/A Length: 20.28 mWidth: 15.54 mHeight: 30.62 mPoints: 20 Vertices: 108 Primitives: 36 Main Files:
Filename.glb.objbuilding_455.glbLinkbuilding_455.objLinkThumbnails:
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DOI: 10.5281/zenodo.12689157
title: Trento 1936 - Building 455

description: Coordinates: N/A Length: 20.28 mWidth: 15.54 mHeight: 30.62 mPoints: 20 Vertices: 108 Primitives: 36 Main Files:
Filename.glb.obj.xmlbuilding_455.objLinkbuilding_455.glbLink11575509_metsmods.xmlLink11575509_edm.xmlLinkThumbnails:
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DOI: 10.5281/zenodo.11249163
title: Sion 1840 - Building 596 (LoD-1)

description: Coordinates: N/A Length: 8.46 mWidth: 11.2 mHeight: 6.92 mVertices: 24 Primitives: 12  The Length, Width, Height, Vertices and Primitives listed above have been derived directly from the OBJ file.