cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5120869.v1
title: Supplementary Material for: A Large-Scale RNAi Screen Identifies <i>Deaf1 </i>as a Regulator of Innate Immune Responses in <i>Drosophila</i>

description: Innate immune signalling pathways are evolutionarily conserved between invertebrates and vertebrates. The analysis of NF-ĸB signalling in <i>Drosophila</i> has contributed important insights into how organisms respond to infection. Nevertheless, significant gaps remain in our understanding of how the activation of intracellular signalling elicits specific transcriptional programs. Here we report a genome-wide RNA interference survey for transcription factors that are required for Toll-dependent immune responses. In addition to the NF-ĸB homologs Dif, Dorsal and factors of the general transcription machinery, we identified Deformed Epidermal Autoregulatory Factor 1 (Deaf1) to be required for the expression of the Toll target gene <i>Drosomycin</i> in cultured cells and in <i>Drosophila </i>in vivo. We show that Deaf1 is required for the survival of flies after fungal, but not <i>E. coli</i>, infection. We determine that Deaf1 acts downstream of the NF-ĸB factors Dorsal and Dif. These results indicate that Deaf1 is an important contributor to innate immune responses in vivo.
DOI: 10.6084/m9.figshare.12980030.v1
title: Students' Responses to Mathematics Reading Assignments

description: This dataset is comprised of five interview transcripts. The research participants, all students, were interviewed about their reading and reading-related behaviors in introductory university mathematics courses.
DOI: 10.6084/m9.figshare.28254860.v1
title: Physical Activity Recommendation System

description: This study developed a framework for predicting physical activity based on information about health status, preferences, calorie intake, race, and gender. Using information about comorbidities, regions, and exercise/eating habits, the proposed recommendation system recommends exercises based on the user’s preferences.
DOI: 10.6084/m9.figshare.5129011.v1
title: Supplementary Material for: The Sustained-Exposure Dexamethasone Formulation OTO-104 Offers Effective Protection against Noise-Induced Hearing Loss

description: The otoprotective effects of OTO-104 were investigated both prior to and following acute acoustic trauma. Guinea pigs received a single intratympanic injection of OTO-104 and were assessed in a model of acute acoustic trauma. Doses of at least 2.0% OTO-104 offered significant protection against hearing loss induced by noise exposure when administered 1 day prior to trauma and up to 3 days thereafter. Otoprotection remained effective even with higher degrees of trauma. In contrast, the administration of a dexamethasone sodium phosphate solution did not protect against noise-induced hearing loss. Activation of the classical nuclear glucocorticoid and mineralocorticoid receptor pathways was required for otoprotection by OTO-104. The sustained exposure properties of OTO-104 were also superior to a steroid solution.
DOI: 10.6084/m9.figshare.7514702.v1
title: SEASONAL INFLUENCE ON SEMINAL PATTERN AND FREEZABILITY OF PANTANEIRO BULL SEMEN

description: Abstract The purpose of this paper was to investigate the effect of the season of the year on testicular morphology, fresh and frozen/thawed semen quality from Pantaneiro bulls bred in Brasilia, DF. Six bulls were submitted, once a month for one year, to evaluation of testicular measurements, semen collection using an artificial vagina and cryopreserved with medium containing Tris-based, egg yolk and glycerol. The testicular length and volume were greater (P &lt; 0.05) in June (11.1±0.8 cm; 652.7±138.0 cm3), July (11.0±0.9 cm; 616.4±156.2 cm3), and September (11.8±0.8 cm; 692.4±141.3 cm3) than October (9.4±1.2 cm; 498.5±154.3 cm3) and November (10.3±1.1 cm; 560.0±111.8 cm3). The sperm concentration was greater (P&lt;0.05) in August (1265.0±436.8 x106sperm/mL) than October, December and January (591.6±192.0, 627.5±314.4; 502.5±172.9 x106/mL). There was no effect of season on the quality of fresh and frozen semen (motility, vigor, total defects and acrosome integrity) (P &gt; 0.05). In conclusion, Pantaneiro bulls, bred in the Midwest region of Brazil, can be used in natural mating programs in all seasons. Aiming to improve the Brazilian Animal Germplasm Bank with a higher number of samples collected, we suggest that the freezing of the semen is done between June and August, although there will be no losses of semen quality at any time.
DOI: 10.17632/m4vwd8mjsg
title: Data for: Effects of soil management on water and soil losses in sloping vineyards in the Monferrato area (NW Italy) in different periods

description: The dataset include rainfall, runoff and erosion variables that were monitored in hydraulically bounded vineyard plots, where the inter-rows were managed with tillage and grass cover. Seventy-two erosive events were recorded in the period 1992-1996 , in two vineyard plots with rows along the contour lines (Table A.1, Vezzolano) and eighty-six erosive events were recorded in two plots with rows up and down the slope from 2000 to 2014 (Table A.2, Cannona).
DOI: 10.6084/m9.figshare.16860523.v3
title: Scans monitoring Callicebus nigrifrons

description: Ecological data collected by scan sample of 6 groups of Black-fronted titi monkeys Callicebus nigrifrons at the Santuario do Caraça, in 2015-2016. <br><br>Site description: <br>See a description of the study site at https://onlinelibrary.wiley.com/doi/full/10.1002/ajp.23335 (pdf available on demand) <br><br>Study subjects: <br>6 groups of wild titi monkeys. Group composition is available in the 'Read me' sheet of the dataset. Groups were habituated to human researchers between 2004 and 2014, and were all completely habituated at the beginning of the data collection. <br><br>Data collection: <br>Data collection took place from Oct 2015 to Aug 2016, for a total of 925 hours. Each group was monitored at least 4 days/month. Groups were monitored from dawn, for at least 6h/day, by a team of two researchers. <br>Every 10 minute, a scan sampling were performed, to collect: <br>-Identity (which can be linked to age and sex) of the individual <br>-Its behaviour <br>-Its vegetation strata <br>-Its height (distance from the ground) <br>-GPS coordinates of the centre of the group (available on demand) <br>A total of 6 researchers collected data. The training of new researchers was performed by the same researchers (MB and GM) but no inter-observer reliability test was conducted. The first month of data collection of each new researcher is not included in the final dataset (to remove the potential errors due to the learning process from the final dataset).<br><br> More information about the groups and the protocol can be found here http://doc.rero.ch/record/324643 or on demand.
DOI: 10.6084/m9.figshare.22237327.v1
title: Data & code underlying the publication: Self-organized mud cracking amplifies the resilience of an iconic ‘Red Beach’ salt marsh

description: Data & code underlying the publication: "Self-organized mud cracking amplifies the resilience of an iconic ‘Red Beach’ salt marsh" by Kang Zhang#, Jiaguo Yan#, Qiang He, Chi Xu*, Johan van de Koppel, Bo Wang, Baoshan Cui*, and Quan-Xing Liu, Science Advances, 2023. The name of the folds correspond to figures in main text; The codes include the R, Matlab and Python. Moves S1-S3 are also included within this repository. Movies can directly produce by Jupyter Notebook code. <br> <br> <br>
DOI: 10.6084/m9.figshare.26367235.v1
title: Jane solutions isomorphs

description: Manually inspected isomorphs of Jane cophylogenetic reconciliations.
DOI: 10.6084/m9.figshare.26891296.v1
title: <b>Data file: Protective Factors for Secondary Traumatic Stress of School Staff Following Student Suicide or Suicidal Behaviour</b>

description: This data set contains survey responses from school staff. The survey investigated whether school staff experienced secondary traumatic stress (STS) symptoms following student suicide/suicidal behaviour. Aligning with the compassion fatigue resilience model, the relationships between protective factors of self-care, detachment, sense of satisfaction, and social support and STS following student suicide/suicidal behaviour were measured. Two STS measures were used, with a focus on self and on helping others. Australian school staff (<i>N </i>= 134) with experience of student suicide/suicidal behaviour responded to an anonymous online survey.
DOI: 10.17632/cwncxbhpgb
title: Raw Data Transparency: Photopolymerization Effects on Composite Resins

description: The raw data presented in the attached files refer to the analyses conducted to evaluate the degree of conversion, flexural strength, elastic modulus, sorption, and solubility of three composite resins: Applic, Opallis, and Zirconfill. These resins were photopolymerized using three different devices: Bluephase, Valo, and Demi Plus.

The data contained in these files represent the original measurements obtained during the experiments and were used to calculate the values presented in the study results. From this information, the necessary statistical analyses were performed to compare the performance of different composite resins under various photopolymerization conditions.

It is important to highlight that the raw data provided have not undergone any filtering or additional processing beyond what was necessary for statistical analyses. Therefore, these values directly reflect the experimental conditions and may be useful for future reanalyses, validations, or comparative studies in the field of dental materials.

The disclosure of these data reinforces the commitment to scientific transparency, allowing other researchers to access the primary information used to construct the conclusions of this study.
This study aims to evaluate the impact of different photopolymerization devices (Bluephase, Valo, and Demi Plus) on the physico-mechanical properties of three composite resins (Applic, Opallis, and Zirconfill). The central hypothesis is that the choice of photopolymerization device directly influences the degree of conversion, flexural strength, elastic modulus, sorption, and solubility of the resins, thereby affecting their durability and clinical performance.

Data Collection
The data were obtained from laboratory experiments in which each composite resin was photopolymerized using the three mentioned devices. Measurements were then conducted to determine the following parameters:

Degree of Conversion (GC%) – Measures the efficiency of monomer-to-polymer conversion during photopolymerization.
Flexural Strength (MPa) – Evaluates the material’s ability to withstand applied forces before fracturing.
Elastic Modulus (GPa) – Indicates the stiffness of the composite resin.
Sorption and Solubility (µg/mm³) – Measures the material's ability to absorb liquids and dissolve in the oral environment..
The presented data can be interpreted by considering the influence of the photopolymerization devices on the physicomechanical properties of the composite resins. The interpretation is based on comparing the values obtained for each resin when subjected to the three devices (Bluephase, Valo, and Demi Plus), identifying patterns and trends.
DOI: 10.6084/m9.figshare.13488798.v1
title: Data for TgNN surrogate

description: Training data and testing data for TgNN surrogates.
DOI: 10.6084/m9.figshare.20238867.v1
title: OncoMerge integrated mutation profiles

description: Final integrated somatic mutation matrices from OncoMerge.
DOI: 10.6084/m9.figshare.21594387.v3
title: Examining the co-occurrences of human threats within terrestrial protected areas

description: "Martini et al_ExaminingThreatsCo-occurrences_Ambio.csv":Dataset used in publication: Martini et al. 2023. Examining the co-occurrences of human threats within terrestrial protected areas. Ambio.Data sources are all publicly available and are described in the article. This dataset is the aggregated and cleaned data that was used to run the Joint Species Distribution Model with the HMSC 3.0 package in R.<br>
DOI: 10.6084/m9.figshare.21972911.v2
title: Dataset of linear-array recordings from macaque V4 during a selective attention task

description: This dataset contains recorded spiking activity from the visual area V4 of one monkey during a selective attention task, using a 16-channel laminar electrode. <br> For more details check the README file and "Engel, T. A., Steinmetz, N. A., Gieselmann, M. A., Thiele, A., Moore, T., & Boahen, K. (2016). Selective modulation of cortical state during spatial attention. <em>Science</em>, <em>354</em>(6316), 1140-1144. https://doi.org/10.1126/science.aag1420". <br> Related references and datasets which include recordings from V1 Paper: Gieselmann, M. A., & Thiele, A. (2022). Stimulus dependence of directed information exchange between cortical layers in macaque V1. <em>Elife</em>, <em>11</em>, e62949. https://doi.org/10.7554/eLife.62949 Data: Gieselmann, Marc; Thiele, Alexander (2022): Stimulus dependence of directed information exchange between cortical layers in macaque V1. Newcastle University. Dataset. https://doi.org/10.25405/data.ncl.17136182.v1 and recordings from V1 and V4: Paper: Doostmohammadi, J., Gieselmann, M. A., van Kempen, J., Lashgari, R., Yoonessi, A., & Thiele, A. (2023). Ripples in macaque V1 and V4 are modulated by top-down visual attention. <em>Proceedings of the National Academy of Sciences</em>, <em>120</em>(5), e2210698120. https://doi.org/10.1073/pnas.2210698120 Data: Doostmohammadi J, Gieselmann MA, van Kempen J, Lashgari R, Yoonessi A, Thiele A (2023) Sharp wave ripples in macaque V1 and V4 are modulated by top-down visual attention. G-Node. https://doi.org/10.12751/g-node.lws3em <br>
DOI: 10.17632/2xx4j3kjg2
title: Detection of Anemia using Colour of the Fingernails Image Datasets from Ghana

description: Anemia is a global public health issue that mostly emerges as a result of a decrease in red blood cell count and is particularly prevalent in Africa. Invasive ways of detecting anemia are expensive and time-consuming. Anemia may, however, be diagnosed using non-invasive technologies such as machine learning algorithms. In our study, we compared machine learning models to detect anemia using the colour of the fingernail. The main dataset consisting of fingernails was developed using Ghana as a case study for dataset collecting.
All photographs were taken by the laboratory personnel, and the Hb Values of patients, age, sex, and a remark (anemic or non-anemic) based on the Hb Value taken were uploaded by technicians or medical laboratory officers using standard high-quality cameras with a minimum of 12MP. The lab officers hold the tip of the fingers and wrist to expose the palm because the participants are minors and cannot completely extend the palm to the expectancy.
Furthermore, to minimize exaggerated shine effects caused by the picture quality, which greatly impacts detection or classification by the models, the cameras' spotlights were turned off when the photos were photographed. This approach is an excellent way to eliminate the impact of ambient light on photos in datasets. 
The datasets were collected from the undermentioned hospitals located in Ghana; Komfo Anokye Teaching Hospital at Kumasi, Bolgatanga Regional Hospital at Bolgatanga, Kintampo Municipal Hospital at Kintampo, Ahmadiyya Muslim Hospital at Techiman, Sunyani Municipal Hospital at Sunyani, Manhyia District Hospital at Kumasi, Ejusu Government Hospital at Ejusu, SDA Hospital at Sunyani, Nkawie-Toase Government Hospital at Nkawie-Toase and Holy Family Hospital at Berekum.  
The dataset for this study focuses on young children aged five and below.  Laboratory technicians take a blood sample from suspected anemic patients  to measure the Hb values of the patients, and images of the fingernails are taken afterwards, and a remark is given based on the Hb value of the patient either anemic or non-anemic. 
The threshold triangle approach was used to extract the ROI of the pictures of the fingernails; that is, ROI differentiation for binary after the background was generated was inferred in the dataset collecting procedure. As the Region of Interest is produced from the counter of the photos, which is the colour of the fingernails.
In the procedure of augmenting the images to expand the size of the original datasets, from 710 images (426 are anemic images while 284 are non-anemic images) to 4260 datasets after the image augmentation of because of the augmentation, all photos were labelled "anemic" and "non-anemic," with a number matching to each.
The reason that all participants are under the age of six, images of their fingernails may be tiny, as compared to that of adults’ images of the fingernails.
DOI: 10.17632/zjb4f5z5gw
title: Septentrio RINEX files and ISMR files

description: GNSS RINEX files from which navigation and observation files are extracted and processed to obtain ionospheric Total Electron Content.
GNSS ISMR files from which scintillation index (S4) index is derived.
DOI: 10.6084/m9.figshare.19160642.v3
title: Supplementary Material for Test Systems.xls

description: Distributed Dispatch of Integrated Electricity-Heat Systems with Variable Mass Flow
DOI: 10.6084/m9.figshare.28615211.v1
title: Chemical properties of soils and stream waters in the Kościeliska Valley

description: The Tatra Mts., the highest mountain range of the Carpathians, have been affected by large-scale forest disturbances in recent years. Windthrow, which occurred in the western part of the Tatra Mts. in 2013, was followed by a bark beetle outbreak. The aim of the study was to determine the response of inorganic N concentrations in soil and stream water to the natural succession of forest disturbances in three small catchments: forested (F), bark beetle (BB) and windthrow deforested (WD). The limited uptake of NO<sub>3</sub><sup>-</sup> by trees in disturbed catchments resulted in significantly higher NO<sub>3</sub><sup>-</sup> concentrations in the surface soil horizons of disturbed catchments, especially the in O horizon in the BB catchment compared to the F catchment. The limited uptake of NO<sub>3</sub><sup>-</sup> in disturbed catchments is particularly evident in spring when the surface soil horizons are further enriched with NO<sub>3</sub><sup>-</sup> from melting snow. High NO<sub>3</sub><sup>-</sup> concentrations in stream water occur in the BB catchment, whereas low NO<sub>3</sub><sup>-</sup> concentrations occur in the WD catchment. A key role in the high supply of NO<sub>3</sub><sup>-</sup> to the stream in the BB catchment is played by the soil O horizon due to its high permeability and ability to flush out of NO<sub>3</sub><sup>-</sup>. Nitrification does not seem to be an important process for the supply of NO<sub>3</sub>-N to the soils. The soils do not differ in nitrification intensity either in spring or in autumn in all studied catchments. Furthermore, the results indicate that N immobilisation occurs in the soils during spring. High ammonification rate in the A soil horizons of both disturbed catchments is the key source of NH<sub>4</sub><sup>+</sup> in stream water in autumn, whereas low ammonification rate reduces NH<sub>4</sub><sup>+</sup> supply to streams in spring.
DOI: 10.6084/m9.figshare.29153633.v1
title: Data Experiential quality and satisfaction in marine tourism: a gendered analysis of post-visit behavior and frequency of visits in Lampung, Indonesia

description: Sustainable tourism in marine destinations is essential for economic growth in areas like Lampung Province, Indonesia. This study investigates the drivers of post-visit behavior through a survey of 321 domestic tourists, utilizing purposive sampling among followers of a prominent travel agency on Instagram. Analyzed using Partial Least Squares Structural Equation Modeling (PLS-SEM), the model includes constructs of experiential quality, destination value, experiential satisfaction, post-visit behavior, frequency of visits, and gender. Results indicate that experiential quality significantly impacts destination value and experiential satisfaction, which in turn influence post-visit behavior. Experiential satisfaction also mediates the relationship between destination value and post-visit behavior, confirming its pivotal role in tourism research. Crucially, the study introduces frequency of visits as a measure of sustainability, examining how often tourists return within a two-year period. Multigroup analysis reveals gender differences in these relationships, offering insights into the distinct behaviors of male and female tourists. These findings have significant implications for marine tourism management in Lampung, suggesting that enhancing experiential aspects can lead to increased visitation and contribute to sustainable tourism development. The study’s approach serves as a model for future research, advocating for targeted strategies to foster tourist engagement and promote the sustainability of the marine tourism sector
DOI: 10.17632/vt5c8h6kmh
title: RHC (Room Human Counting)

description: A dataset for human counting in a room. The data consists of images that captured using a CCTV in a room where the outside of the room is visible. It poses a challenge to discriminate between in-room and out-room humans for the model that is developed using this dataset.
DOI: 10.6084/m9.figshare.20147135.v1
title: Mating loci and meiosis genes and CDS of Ustilaginales fungi

description: Core meiosis genes/CDS were manually annotated in the genomes of several Ustilaginales species using the respective genes from <em>Ustilago maydis</em> (Gioti et al., 2013). Mating loci and mating genes/CDS were identified using the mating genes of <em>Ustilago maydis</em> and <em>Sporisorium reilianum</em>. The dataset contains the sequences in GenBnk format for the meiosis genes and both mating loci conserved in Ustilaginomycetes. This dataset was generated in the study described in the unpublished manuscript "Comparative genomics of smut fungi suggest the ability of meiosis and mating in asexual species of the genus <em>Pseudozyma</em> (Ustilaginales)". Accession numbers of reference genes are cited in the manuscript. The attached text file contains NCBI Accession numbers for the used genomes. Tblastn was used to identify the loci in the genome, and multiple sequence alignments (MUSCLE) of the respective reference gene and CDS with the suspected locus were used to identify the reading frames and intron positions.
DOI: 10.6084/m9.figshare.22637761.v1
title: Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes

description: This repository contains all mitogenomes of 472 insects, phylogenomic data matrix, and single gene alignments and constrained and re-estimated gene trees used to calculate the ERC values.
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Each folder corresponds to each topic in our study.
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Please let me know if you have any questions about them.
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email: xingxingshen@zju.edu.cn
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