cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14572656.v1
title: Supplementary Material for: A Comparison of Focal and Opportunistic Sampling Methods when Studying Chimpanzee Facial and Gestural Communication

description: Researchers frequently use focal individual sampling to study primate communication. Recent studies of primate gestures have shown that opportunistic sampling offers benefits not found in focal individual sampling, such as the collection of larger sample sizes. What is not known is whether the opportunistic method is biased towards certain signal types or signalers. Our goal was to assess the validity of the opportunistic method by comparing focal individual sampling to opportunistic sampling of facial and gestural communication in a group of captive chimpanzees (<i>Pan troglodytes</i>). We compared: (1) the number of observed facial and gestural signals per signal type and (2) the number of observed facial and gestural signals produced by each signaler. Both methods identified facial signals, gesture signals, and gesture signalers at similar relative rates, but the opportunistic sampling method yielded a more even distribution of signalers and signal types than the focal individual sampling method. In addition, the opportunistic sampling method resulted in larger sample sizes for both facial and gestural communication. However, the opportunistic method did not allow us to calculate the signals per time for each individual, which is easily done with the focal individual method. These results suggest that the opportunistic sampling method is (1) comparable to the focal individual sampling method in multiple important measures, (2) associated with additional sampling benefits, and (3) limited in measuring some variables. Thus, we recommend that future studies use a mixed-methods approach, as focal individual and opportunistic sampling have distinct strengths that complement each other’s limitations.
DOI: 10.6084/m9.figshare.22674022.v1
title: Data and scripts for Sentenac et al.(2023) "Biofilm community composition is changing in remote mountain lakes with a relative increase in potentially toxigenic algae"

description: Contains R scripts to get and format biofilm microbiome (prokaryotic and microeukaryotic) data and metadata, as well as to reproduce all statistical analyses and figures. 
Contains datasets as .csv, .tsv, and R objects (.RDS files). 
<strong>Please read the READ_ME.docx for instructions, scripts need to be run once in a specific order ! </strong>
DOI: 10.17632/xtysw9cyxs
title: Dataset explaining the comparative seasonal crop load and harvest quality of guava upon pruning strategies

description: The dataset explains the details on how pruning techniques significantly affect the seasonal variations on fruit availability and edible quality of guava under fluctuating sub-tropical weather conditions. The present pruning data also direct a way of enhancing lean season (off-season) harvest without sacrificing the main season yield and fruit quality. Over two consecutive years (2019-2020 and 2020-2021), the pruning treatments were assigned in triplicates where the same plants received the same treatments during observation period starting with spring pruning. Data on crop load like number of fruits and fruit yield plant-1 and fruit biochemical traits namely total soluble solids, titratable acidity, total sugars, vitamin C and fruit specific gravity were recorded. To assess the seasonal variations, data collection was performed continuously and grouped as rainy and non-rainy seasons. Irrespective of pruning techniques, rainy season had superior yield, whereas non-rainy harvests retained utmost fruit quality. Considering pruning time, plants reserved maximum harvestable fruits during rainy period under march pruning. Moreover, total soluble solids, total sugars, vitamin C and fruit specific gravity examined the best at non-rainy harvests under autumn pruning. Alongside, wet period exhibited superiority for yield over dry period when plants were pruned at 0 cm to 30 cm levels, but 45 cm pruning level showed differential results.
DOI: 10.6084/m9.figshare.25330930.v1
title: Efficient modelling of ionic and electronic interactions by resistive memory-based reservoir graph neural network

description: Dataset for the resistive memory-based reservoir graph neural network.References:<br>1. C.W. Park, M. Kornbluth, J. Vandermause, C. Wolverton, B. Kozinsky, J.P. Mailoa, Accurate and scalable graph neural network force field and molecular dynamics with direct force architecture, npj Comput. Mater. 7(1) (2021) 73. https://github.com/ken2403/gnnff.git<br>2. H. Li, Z. Wang, N. Zou, M. Ye, R. Xu, X. Gong, W. Duan, Y. Xu, Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation, Nat. Comput. Sci. 2(6) (2022) 367-377.https://github.com/mzjb/DeepH-pack.git<br>3. D. Pfau, J.S. Spencer, A.G.D.G. Matthews, W.M.C. Foulkes, Ab initio solution of the many-electron Schrödinger equation with deep neural networks, Phys. Rev. Res. 2(3) (2020) 033429.https://github.com/google-deepmind/ferminet.gitAll the code is extended based on the above references, with the primary goal of deploying these models onto hardware systems based on resistive memory chips. Thanks to the original authors for their generous sharing. If you need to use the codes, please refer to the original version of the code and literature.
DOI: 10.6084/m9.figshare.25710036.v1
title: Supplemental 1.pdf

description: This document provides supplementary information for "Neural-field-assisted transport-of-intensity phase microscopy: partially coherent quantitative phase imaging under unknown defocus distance". We discuss in detail the principles of neural-field-assisted transport-of-intensity
phase microscopy (NFTPM) and present more experimental results.
DOI: 10.6084/m9.figshare.28146917.v1
title: dataset Omodei et al.xlsx

description: This randomized clinical trial analysed 80 women with diagnosis of breast cancer, eligible neoadjuvant chemotherapy, that received either daily supplementation with 2000IU of cholecalciferol (n=40) or placebo (n=40) during 6 months.
DOI: 10.6084/m9.figshare.19345022.v1
title: Mann-Whitney U

description: Table 4: Mann-Whitney U test for comparing the surface characteristics of Damon and Pactive brackets (N=9 for each bracket type), showing non-significant differences between the frequencies of bracket gate smoothness/roughness scores despite higher frequencies of smoother Damon bracket gates.
DOI: 10.6084/m9.figshare.25577973.v3
title: Hydrochemical data of two glacial meltwater during the initial abrasion period

description: This data is about hydrochemical information of two glacial meltwater on the Tibetan Plateau, including physico-chemical parameters, tracer tests, major ionic concentration, <i>p</i>CO<sub>2</sub>, dissolved inorganic carbon concentrantion and its stable carbon isotopes.
DOI: 10.6084/m9.figshare.28564391.v1
title: Nobel Laureates and Google Scholar citation data

description: <b>Data related to the article:</b><br><i>Does excellence correspond to a universal level of inequality? Evidence from scholarly citations & Olympic medal data</i>; Soumyajyoti Biswas, Bikas K. Chakrabarti, Asim Ghosh, Sourav Ghosh, Máté Józsa, and Zoltán Néda.<br>As the filenames suggest, the dataset contains information about 235,750 authors from Google Scholar, including their Google Scholar IDs (for more details, see this dataset). Additionally, it includes data on 80 Nobel Laureates, with the following metrics:<b>np</b> = number of publications<b>nc</b> = number of citations<b>h</b> = Hirsch index<b>q</b> = Q-factor (maximum citations / mean citations)<b>g</b> = Gini index<b>k</b> = Kolkata index
DOI: 10.6084/m9.figshare.28925720.v1
title: Insect raw data

description: This study aims to investigate the attitudes, perceived benefits, and perceived risks associated with using insects in animal feed among non-vegetarian sport enthusiasts, as well as their willingness to accept such feed practices and pay for animal products derived from insect-fed animals. A questionnaire-based survey was conducted among individuals who met the following criteria: non-vegetarians, at least one year of sport experience, and attention to the intake of animal-derived protein. A total of 420 valid responses were analyzed using descriptive statistics and logistic regression to assess how socio-demographic factors, attitudes, and perceptions influenced acceptance and willingness to pay for insect-based feed practices. Positive attitudes towards using insects in animal feed significantly increased both acceptance and willingness to pay a premium (above 10 yuan/kg) for resulting animal products. Male participants and those who perceived greater benefits from insect feed were also more likely to pay a higher price. The findings suggest general acceptability of insect feed among non-vegetarian sport enthusiasts. This study provides novel insights into a niche consumer segment, non-vegetarian sport enthusiasts, who are attentive to dietary protein sources, offering a unique perspective on the acceptance and market potential of insect-based animal feed.
DOI: 10.6084/m9.figshare.3562791.v1
title: Supplement 2. SMS model used to estimate connectivity for the natterjack toad Epidalea calamita.

description: File List ToadBatch04.exe (MD5: 17e01d0956e0880e87ef5b6ca3e473d7) Animal.cpp (MD5: afea5a9f39adfc5764e881c08eeed9b0) Animal.h (MD5: 4d70ca44f142d4e3e91e3618e6e1c298) Landscape.cpp (MD5: eb7133c1d5a9c057abfdd2abf48c7b04) Landscape.h (MD5: 2822da8eed0bd8bc0cde4273466aa255) Main.cpp (MD5: 904510eca61fbfe1c5026a027bf7f4cd) MoveInd.cpp (MD5: 580fc720826812645d0554ec02cfc3cd) MoveInd.h (MD5: fdd9985a8a4828b0b182a965a5b75f50) Parameters.cpp (MD5: ac9f7306c34420f1fd8baa58dbe8895d) Parameters.h (MD5: fea75e7ecc681373321b9c22719218d7) Toadscape.cpp (MD5: 0775b97bb9a126985a1eba74611479f5) Toadscape.h (MD5: dfba7b9c1af3fd0e1211c348a62082d4) control.txt (MD5: 8acb69a8d97b5d846a9ea29df151ea49) parameters.txt (MD5: 446194a6aa277003091860258a555f33) Description -- TABLE: Please see in attached file. -- Note: The compiled program uses random number generators distributed by Agner Fog, the code for which may be obtained from http://www.agner.org/random/
DOI: 10.17028/rd.lboro.28911305.v1
title: Supplementary information files for "Extreme electron–hole drag and negative mobility in the Dirac plasma of graphene"

description: Supplementary files for article "Extreme electron–hole drag and negative mobility in the Dirac plasma of graphene"<br><br>Coulomb drag between adjacent electron and hole gases has attracted considerable attention, being studied in various two-dimensional systems, including semiconductor and graphene heterostructures. Here we report measurements of electron–hole drag in the Planckian plasma that develops in monolayer graphene in the vicinity of its Dirac point above liquid-nitrogen temperatures. The frequent electron–hole scattering forces minority carriers to move against the applied electric field due to the drag induced by majority carriers. This unidirectional transport of electrons and holes results in nominally negative mobility for the minority carriers. The electron–hole drag is found to be strongest near room temperature, despite being notably affected by phonon scattering. Our findings provide better understanding of the transport properties of charge-neutral graphene, reveal limits on its hydrodynamic description, and also offer insight into quantum-critical systems in general.<br><br>© The Author(s), CC BY-4.0
DOI: 10.17632/9pnj7pmzzh
title: Data for: Two Species, One Snare: Analysing the impacts of Tiger poaching on a non-target species, the Malayan Tapir.

description: This data contains the monthly totals for evidence of Tigers, Tapirs and Snare Traps within Kerinci Seblat National Park between 2012-2015. Data for this report was collected and collated by the Tiger Protection and Conservation Units, based in Sumatra Indonesia. Also included are the number of days on patrol (PatrolDay: Total for multiple patrols), the distance covered by patrols (km), and the total area covered by patrols based on a MCP (km2).
DOI: 10.17632/z7nz45xcg9
title: dataset

description: Our data files contain two files:
"Dataset.RData" provides all of the variables used in the analysis. 
"Code.R" computes the results for all the tables. This file contain a precise description of every step of the procedure.
Our data comes from the CNRDS and CSMAR databases, both of which are subscription-based. To avoid any potential disputes, we have replaced the `Code` column with a unique identifier. This transformation does not affect the reproducibility of the results presented in this paper.
DOI: 10.25452/figshare.plus.21913149.v1
title: Fenna–Matthews–Olson (FMO) datasets

description: The dynamics of the Fenna–Matthews–Olson (FMO) complex. FMO-Ia and FMO-Ib data sets: 7-site FMO model Hamiltonian parametrized by Adolphs and Renger solved with local thermalizing Lindblad master equation approach. FMO-II data set: 7-site FMO model Hamiltonian parametrized by Cho et al. solved with local thermalizing Lindblad master equation approach. FMO-III data set: 8-site FMO model Hamiltonian parametrized by Jia et al. solved with local thermalizing Lindblad master equation approach. FMO-IV data set: 8-site FMO model Hamiltonian parametrized by Olbrich et al. and Busch et al. solved with local thermalizing Lindblad master equation approach. FMO-V data set: FMO trimer based on 8-site model Hamiltonian parametrized by Olbrich et al. and Busch et al. solved with local thermalizing Lindblad master equation approach. FMO-VI data set: 8-site FMO model Hamiltonian parametrized by by Olbrich et al. and Busch et al. solved solved with hierarchical equations of motion approach. Each data set contains reduced density matrix of the electronic 7- or 8-site system. <br> See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.6389553 <br> Collection description: Simulations of the dynamics of dissipative quantum systems utilize many methods such as physics-based quantum, semiclassical, and quantum-classical as well as machine learning-based approximations, development and testing of which requires diverse data sets. Here we present a new database QD3SET-1 containing eight data sets of quantum dynamical data for two systems of broad interest, spin-boson (SB) model and the Fenna–Matthews–Olson (FMO) complex, generated with two different methods solving the dynamics, approximate local thermalizing Lindblad master equation (LTLME) and highly accurate hierarchy equations of motion (HEOM). One data set was generated with the SB model which is a two-level quantum system coupled to a harmonic environment using HEOM for 1,000 model parameters. Seven data sets were collected for the FMO complex of different sizes (7- and 8-site monomer and 24-site trimer with LTLME and 8-site monomer with HEOM) for 500–879 model parameters. Our QD3SET-1 database contains both population and coherence dynamics data and part of it has been already used for machine learning-based quantum dynamics studies.<br>
DOI: 10.6084/m9.figshare.12624851.v1
title: Supplemental materials for 3D scanning as a powerful tool for the analysis of bird nests by Sergey Simonov and Maria Matantseva in Avian Biology Research

description: File Nest parameters.xlsx - measurements of nests File ACCA1.ply- 3D mesh, nest of Сommon Linnet <i>Acanthis cannabina</i> File ACCA2.ply- 3D mesh, nest of Сommon Linnet <i>Acanthis cannabina</i> File CAER1.ply- 3D mesh, nest of Common Rosefinch <i>Carpodacus erythrinus</i> File CAER2.ply- 3D mesh, nest of Common Rosefinch <i>Carpodacus erythrinus</i> File LACO1.ply- 3D mesh, nest of Red-backed Shrike <i>Lanius collurio </i> File LACO2.ply- 3D mesh, nest of Red-backed Shrike <i>Lanius collurio</i> File LACO3.ply- 3D mesh, nest of Red-backed Shrike <i>Lanius collurio</i> File LACO4.ply- 3D mesh, nest of Red-backed Shrike <i>Lanius collurio</i> File LACO5.ply- 3D mesh, nest of Red-backed Shrike <i>Lanius collurio</i> File LULU1.ply- 3D mesh, nest of Thrush Nightingale <i>Luscinia luscinia</i> File SYAT1.ply- 3D mesh, nest of Eurasian Blackcap <i>Sylvia atricapilla</i> File SYAT4.ply- 3D mesh, nest of Eurasian Blackcap <i>Sylvia atricapilla</i> File SYAT5.ply- 3D mesh, nest of Eurasian Blackcap <i>Sylvia atricapilla</i> File SYAT7.ply- 3D mesh, nest of Eurasian Blackcap <i>Sylvia atricapilla</i> File SYBO1.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO2.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO5.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO6.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO8.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO9.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYBO10.ply- 3D mesh, nest of Garden Warbler <i>Sylvia borin</i> File SYCO4.ply- 3D mesh, nest of Common Whitethroat <i>Sylvia communis</i> File SYCU1.ply- 3D mesh, nest of Lesser Whitethroat <i>Sylvia curruca</i> File TUIL1.ply- 3D mesh, nest of Redwing <i>Turdus iliacus </i> File TUME4.ply- 3D mesh, nest of Common Blackbird <i>Turdus merula </i> File TUPH1.ply- 3D mesh, nest of Song Thrush <i>Turdus philomelos</i> File TUPH2.ply- 3D mesh, nest of Song Thrush <i>Turdus philomelos</i> File TUPH6.ply- 3D mesh, nest of Song Thrush <i>Turdus philomelos</i> File TUPH9.ply- 3D mesh, nest of Song Thrush <i>Turdus philomelos</i> File TUPH11.ply- 3D mesh, nest of Song Thrush<i> Turdus philomelos </i> File TUPH20.ply- 3D mesh, nest of Song Thrush <i>Turdus philomelos</i>
DOI: 10.6084/m9.figshare.13208705.v3
title: MRI Brain+Neck Atlases

description: MRI atlases generated from 218 IXI subjects [1], using the Multi-Brain (MB) toolbox [2]. There are three MR contrasts: T1-, T2- and PD-weighted. The atlases have both brain and neck coverage, and have 1 mm isotropic resolution. The filenames containing 'mni' are in MNI space, the others are in MB space.<br><br>1. http://brain-development.org/ixi-dataset/<br>2. https://github.com/WTCN-computational-anatomy-group/diffeo-segment<br><br>
DOI: 10.6084/m9.figshare.25397299.v1
title: Supplementary Material for: Mortality Risk in US NICU Infants by Birth Size Classifications Comparing Three Growth Curves

description: Introduction: Three widely referenced growth curves classify infant birth anthropometric measurements as small (SGA), appropriate (AGA), or large (LGA) for gestational age (GA) differently. We assessed how these differences in assignment affect the identification and prediction of neonatal intensive care unit (NICU) mortality risk in US preterm infants.
Methods: Birth data of infants admitted to NICUs from the Pediatrix Clinical Data Warehouse (2013-2018) were analyzed. Birth weight, length, and head circumference of 46,724 singleton infants (24-32 weeks’ GA) were classified as SGA, AGA, or LGA using the Olsen, Fenton, and INTERGROWTH–21st curves. NICU mortality risk based on birth size classification was analyzed using unadjusted and adjusted logistic regression stratified by GA.
Results: Odds of mortality were increased with SGA classification at all GAs, size measurements and curve sets, compared with AGA infants. LGA classification for weight was associated with lower mortality risk at 24 weeks GA and higher risk at 30 weeks GA. Odds of mortality did not differ significantly across curve sets. Classification of size at birth alone had relatively low predictive ability to identify mortality risk, with unadjusted AUCs near 0.5 for all analyses. 
Discussion/Conclusion: There were no significant differences across curve sets in predicting mortality. Classification of size at birth is a relatively imprecise method to identify infants at risk for NICU mortality.
DOI: 10.6084/m9.figshare.29043644.v3
title: Data sets in the three experiments

description: Data obtained in the three experiments
DOI: 10.6084/m9.figshare.6826775.v3
title: qPCR in human eosinophils after glucocorticoid exposure

description: Eosinophils were isolated from the peripheral blood of each of five human subjects. Purified eosinophils were then incubated for 4 hours, followed by exposure to dexamethasone (0.5 mcM) or vehicle (culture medium) for an additional 30, 60, or 120 minutes. RNA was purified from each sample and reverse-transcription quantitative real-time PCR (qPCR) was performed on the QuantStudio6 Flex System with the TaqMan Fast Universal PCR Master Mix and FAM-labeled TaqMan gene expression assay sets for human <i>CXCR4</i>, <i>CCR1</i>, <i>XIAP</i>, <i>CCR3</i>, <i>NOTCH1</i>, <i>ZBTB16</i>, <i>PAK1</i>, <i>CASP9</i>, <i>TNFAIP3</i>, <i>BCL2L11</i> and <i>TSC22D3</i>. The gene encoding 18S rRNA was used as an endogenous control. The mean Ct values for each subject, under each condition (dexamethasone or medium), at each time point, were calculated as the mean of two technical replicates, and are presented in the Excel file, with one tab for each gene.
DOI: 10.17632/chkrp2j46y
title: INSTRUMENT ASSISSTED RELEASE OF QUADRATUS LUMBORUM ON PELVIC POSTURE AND ILIOPSOAS MUSCLE LENGTH IN NON-SPECIFIC LBP: A DOUBLE BLINDED PLACEBO CONTROLLED TRIAL

description: Iliopsoas and quadratus lumborum (QL) muscles, which are anatomically connected, frequently get stiff and adopt the anterior pelvic tilt posture in persistent non-specific low back pain (NSLBP). Since iliopsoas is a deep muscle it cannot be directly targeted for release. Instrument assisted release (IASTM) has gained popularity due to less efforts exerted by the therapist’s hands. However, the literature determining the effects of IASTM is still emerging. To determine the effect of IASTM release of QL on length of iliopsoas & pelvic posture in NSLBP. Thirty-two participants with NSLBP received conventional physiotherapy treatment including IFT & UST. In addition experimental group received IASTM (n=16), whereas control group (n=16) received sham IASTM for 10 days (5 sessions).The primary outcomes were length of iliopsoas using diagnostic ultrasonography & Thomas test angle, pelvic posture, assessed pre and post intervention. There was significant increase (p=0.0001) in the length of iliopsoas, decrease in the degree of Thomas test and angle of anterior pelvic tilt in experimental group when compared to control group.
DOI: 10.6084/m9.figshare.19651746.v2
title: AbEMap results: Confusion Matrix for BM5.5 Ab crystal inputs

description: The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on 21 of the new antigens added to BM5.5 with antibody crystal structures as input. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120).