cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cafmc2
title: Occurrence Download

description: A dataset containing 502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blaberus giganteus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 502 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016522-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14223030
title: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulence

description: R Markdown file and Data for Manuscript: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulenceAuthors: Ana Korša , Moritz Baur, Nora Schulz, Jaime M. Anaya-Rojas , Alexander Mellmann, Joachim Kurtz

The data here are listed in the order they are used in the manuscript for figures and analysisAbbreviations: P-primed evolved pathogen, C-control evolved pathogen, A-ancestral pathogen

By using data below and the script provided within a Markdown file, one could recreate the analysis. 

Additionally, the script and data used for Bayesian analysis is provided separately. 

1)Proportion mortality - data set with the proportion of mortality (virulence in host per individual bacterial replicate used for Figure 12)Selection mortality - data set used for statistical analysis. 0- represents alive host, 1- dead host3)Spore load data - xls.data set used for spore load plot 4)Spore load data - csv file used for statistical analysis 5)Sporeload_mortality_spores_fitness - file used for spore growth analysis and plot. It is also used for plotting and analysis of fitness measures It combines proportion mortality data, average spore growth data/replicate, and fitness measure and correlation analysis in supplements6)average_proportion_priming_sensitivity_fitness - data set used for plotting and analysis of priming sensitivity and correlation of priming sensitivity and fitness7)2023-08Btt-cry-qPCR-results.csv - data set used for Cry gene expression analysis and plot8)Final variants - data set used for genomic variants heatmap9)plasmids - data set used for analysis and plotting the plasmids 10)plasmids_cry - data set used for correlation of cry expression and 188kn plasmid 11)Phage_log2diff - Phage coverage shown as log2 difference whole chromosome and phage coverage used for plots and analysis12)Pearson global - file used for correlation matrix in the supplements. Combines spore growth, spore load, virulence, cry expression, 188 kb plasmids, and 3 phages to see if there are some significant correlations in primed and control evolved pathogen13) Pearson's new data set is used for the correlation matrix in the supplements. It combines priming sensitivity, fitness, Cry expression, phages, and a 188kb plasmid. 

Bayesian analysis - Main_FIN. R, data.csv and analysis.R
DOI: 10.5281/zenodo.14223031
title: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulence

description: R Markdown file and Data for Manuscript: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulenceAuthors: Ana Korša , Moritz Baur, Nora Schulz, Jaime M. Anaya-Rojas , Alexander Mellmann, Joachim Kurtz

The data here are listed in the order they are used in the manuscript for figures and analysisAbbreviations: P-primed evolved pathogen, C-control evolved pathogen, A-ancestral pathogen

By using data below and the script provided within a Markdown file, one could recreate the analysis. 

Additionally, the script and data used for Bayesian analysis is provided separately. 

1)Proportion mortality - data set with the proportion of mortality (virulence in host per individual bacterial replicate used for Figure 12)Selection mortality - data set used for statistical analysis. 0- represents alive host, 1- dead host3)Spore load data - xls.data set used for spore load plot 4)Spore load data - csv file used for statistical analysis 5)Sporeload_mortality_spores_fitness - file used for spore growth analysis and plot. It is also used for plotting and analysis of fitness measures It combines proportion mortality data, average spore growth data/replicate, and fitness measure and correlation analysis in supplements6)average_proportion_priming_sensitivity_fitness - data set used for plotting and analysis of priming sensitivity and correlation of priming sensitivity and fitness7)2023-08Btt-cry-qPCR-results.csv - data set used for Cry gene expression analysis and plot8)Final variants - data set used for genomic variants heatmap9)plasmids - data set used for analysis and plotting the plasmids 10)plasmids_cry - data set used for correlation of cry expression and 188kn plasmid 11)Phage_log2diff - Phage coverage shown as log2 difference whole chromosome and phage coverage used for plots and analysis12)Pearson global - file used for correlation matrix in the supplements. Combines spore growth, spore load, virulence, cry expression, 188 kb plasmids, and 3 phages to see if there are some significant correlations in primed and control evolved pathogen13) Pearson's new data set is used for the correlation matrix in the supplements. It combines priming sensitivity, fitness, Cry expression, phages, and a 188kb plasmid. 

Bayesian analysis - Main. R, analysis. R, data and data_priming : details are explained in Read_me file.
DOI: 10.5281/zenodo.15050213
title: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulence

description: R Markdown file and Data for Manuscript: Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulenceAuthors: Ana Korša , Moritz Baur, Nora Schulz, Jaime M. Anaya-Rojas , Alexander Mellmann, Joachim Kurtz

The data here are listed in the order they are used in the manuscript for figures and analysisAbbreviations: P-primed evolved pathogen, C-control evolved pathogen, A-ancestral pathogen

By using data below and the script provided within a Markdown file, one could recreate the analysis. 

Additionally, the script and data used for Bayesian analysis is provided separately. 

1)Proportion mortality - data set with the proportion of mortality (virulence in host per individual bacterial replicate used for Figure 12)Selection mortality - data set used for statistical analysis. 0- represents alive host, 1- dead host3)Spore load data - xls.data set used for spore load plot 4)Spore load data - csv file used for statistical analysis 5)Sporeload_mortality_spores_fitness - file used for spore growth analysis and plot. It is also used for plotting and analysis of fitness measures It combines proportion mortality data, average spore growth data/replicate, and fitness measure and correlation analysis in supplements6)average_proportion_priming_sensitivity_fitness - data set used for plotting and analysis of priming sensitivity and correlation of priming sensitivity and fitness7)2023-08Btt-cry-qPCR-results.csv - data set used for Cry gene expression analysis and plot8)Final variants - data set used for genomic variants heatmap9)plasmids - data set used for analysis and plotting the plasmids 10)plasmids_cry - data set used for correlation of cry expression and 188kn plasmid 11)Phage_log2diff - Phage coverage shown as log2 difference whole chromosome and phage coverage used for plots and analysis12)Pearson global - file used for correlation matrix in the supplements. Combines spore growth, spore load, virulence, cry expression, 188 kb plasmids, and 3 phages to see if there are some significant correlations in primed and control evolved pathogen13) Pearson's new data set is used for the correlation matrix in the supplements. It combines priming sensitivity, fitness, Cry expression, phages, and a 188kb plasmid. 

Bayesian analysis - Main_FIN. R, data.csv and analysis.R
DOI: 10.15468/dl.tjp5tq
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bitoma brevipes (Sharp, 1894)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016523-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pka2m
title: Occurrence Download

description: A dataset containing 4098 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrilus planipennis Fairmaire, 1888"
 ]
}

 The dataset includes 4098 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016524-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28623290.v1
title: TRAFFIC FLOW DATA

description: Road networks facilitate the Transportation of goods and people from one place to another. Disruptions to the road network can occur due to unexpected hazardous events within the road network that can cause delays. A road network is resilient if it can return to its original performance after disruptions. In this study, attempts have been conducted to assess the resilience of urban road networks in Tanzania. Mbeya city has been chosen as a case study. The resilience of road networks was assessed by simulating road networks with and without disruptions.
DOI: 10.6084/m9.figshare.28623290
title: TRAFFIC FLOW DATA

description: Road networks facilitate the Transportation of goods and people from one place to another. Disruptions to the road network can occur due to unexpected hazardous events within the road network that can cause delays. A road network is resilient if it can return to its original performance after disruptions. In this study, attempts have been conducted to assess the resilience of urban road networks in Tanzania. Mbeya city has been chosen as a case study. The resilience of road networks was assessed by simulating road networks with and without disruptions.
DOI: 10.15468/dl.kyru7g
title: Occurrence Download

description: A dataset containing 5052 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Photographs of higher plants, mosses, fungi, lichens, and algae"
 ]
}

 The dataset includes 5052 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016525-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/ef9c3610-c8b5-4f84-8c73-af4426ddd1de
title: Data underlying the publication: Canopy cover at crown-scale best predicts spatial heterogeneity of soil moisture within a temperate Atlantic forest

description: experimental data of soil moisture and TLS, measured in a monoculture forest in The Netherlands along a dry-down. The experimental treatments in place concern densities (0-100% tree removal).
DOI: 10.4121/ef9c3610-c8b5-4f84-8c73-af4426ddd1de.v1
title: Data underlying the publication: Canopy cover at crown-scale best predicts spatial heterogeneity of soil moisture within a temperate Atlantic forest

description: experimental data of soil moisture and TLS, measured in a monoculture forest in The Netherlands along a dry-down. The experimental treatments in place concern densities (0-100% tree removal).
DOI: 10.34740/kaggle/dsv/11086369
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.rkwqzh
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Laricifomes officinalis (Vill.) Kotl. & Pouzar"
 ]
}

 The dataset includes 296 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016527-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sq8x7
title: Occurrence Download

description: A dataset containing 5837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dissostichus mawsoni Norman, 1937",
 "Year 2000-2014"
 ]
}

 The dataset includes 5837 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016528-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4anbca
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trichosanthes dioica Roxb."
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016530-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5c6x9b
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blaberus discoidalis Serville, 1838",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 99 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016531-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c3weh
title: Occurrence Download

description: A dataset containing 26253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyparrhenia hirta (L.) Stapf",
 "Year 1970-2025"
 ]
}

 The dataset includes 26253 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016532-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28623368
title: CU and GDH distribution over the Northern Hemisphere

description: CU and GDH distribuiton over the Northern Hemisphere between 1983-2015
DOI: 10.6084/m9.figshare.28623368.v1
title: CU and GDH distribution over the Northern Hemisphere

description: CU and GDH distribuiton over the Northern Hemisphere between 1983-2015
DOI: 10.15468/dl.gnsntp
title: Occurrence Download

description: A dataset listing the 51279 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Royal Botanic Gardens, Kew - Fungarium Specimens"
 ]
}

 The dataset's 51279 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016511-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc26hk9l
title: CCDC 2040739: Experimental Crystal Structure Determination

description: Related Article: Yang xiaoli|2020|CSD Communication|||
description: Related Article: Xiao-Li Yang, Yang-Tian Yan, Wen-Juan Wang, Ze-Ze Hao, Wen-Yan Zhang, Wenhuan Huang, Yao-Yu Wang|2021|Inorg.Chem.|60|3156|doi:10.1021/acs.inorgchem.0c03506
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vjtwdv
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Dendrobium thyrsiflorum B.S.Williams"
 ]
}

 The dataset includes 63 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016533-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz5pxy
title: Occurrence Download

description: A dataset containing 9283055 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora von Deutschland (Phanerogamen)"
 ]
}

 The dataset includes 9283055 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016519-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsjqfj
title: Occurrence Download

description: A dataset containing 7244750 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria"
 ]
}

 The dataset includes 7244750 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016526-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nuhpfm
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceroplastes cirripediformis Comstock, 1881",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016535-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eagxv8
title: Occurrence Download

description: A dataset containing 471892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Populus tremula L.",
 "Year 1970-2025"
 ]
}

 The dataset includes 471892 records from 1346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016499-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/wyf-r5q-6fx
title: Eisenackitina oviformis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xb3-g9f-wx5
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hkx-pzh-d2w
title: Eisenackitina lagenomorpha

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zhj-d3r-l94
title: Embolite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3057228/2543227
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/62r-m0a-26h
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pnl-lmz-p95
title: Conochitina subcyatha

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/eas-76l-07z
title: Anoigmaichnus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s6n-1gd-nxx
title: Eisenackitina cf. barrandei

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m0l-y01-3g4
title: Ancyrochitina cf. diabolus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v9e-a8j-wmg
title: Spinachitina fragilis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3057229/2543228
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/mmp-h16-hrt
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mxe-vlp-spe
title: Spinachitina fragilis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d80-4eq-elt
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wm3-x28-r0g
title: †Mesotrypa excentrica Modzalevskaya, 1953

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6zv-z1z-5z9
title: Eisenackitina cf. intermedia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3057230/2543229
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/m3m-5ba-jbp
title: Angochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qlg-s01-q6x
title: Anoigmaichnus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5ac-jdy-4p8
title: Anoigmaichnus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m2f-wl3-9h4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nhw-er2-qh6
title: Kujdanowiaspis podolica (Brotzen, 1934)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y59-cwx-hlx
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/81n-zm6-kbt
title: Kujdanowiaspis podolica (Brotzen, 1934)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3057232/2543230
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/14n-4ty-rfj
title: Conochitina argillophila

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2yh-nw7-33z
title: †Eochonetes Reed, 1917

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x8k-5rn-7vm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zys-0zx-1x7
title: †Atrypida Rzhonsnitskaya, 1960

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r5n-kev-ths
title: Belonechitina sp. B

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w2l-sxl-8c4
title: †Triplesia Hall, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3057233/2543231
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/9c0-9v3-2lw
title: Linochitina? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j6y-w1v-8vc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3tx-7w8-9jp
title: Cingulochitina? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/89p-qyd-1gs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.