cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.868866.v4
title: Images of 3D printing output for Sculptures of Complexity - Sculpexity

description: Images of the output from a 3D printer produced as part of the project Sculpexity - Scultures of Complexity. Article to appear in European Physics Letters on 9th December 2013. Also available on arXiv.org. These images are available under the Creative Commons licence with attribution - CC_BY.<br>Licensees may copy, distribute, display and perform the work and make derivative works based on it<br>only if they give the author or licensor the credits in the manner specified by these. If used, please cite article "Sculplexity: Sculpures of Complexity and 3D printing" in European Physics Letters 104 (2013) 48001. doi 10.1209/0295-5075/104/48001 Best top views are<br>20131111_170932.jpg<br>20131111_170123.jpg<br>20131111_170125.jpg<br>and for bottom view try<br>20131111_170223.jpg. Picture names "Tim Evans ..." contain shots of me holding the output from the project. Links to project reports and code on figshare are below. Also links to journal article, copy on personal web page, blogs and pother relevant places below.
DOI: 10.6084/m9.figshare.24191208.v1
title: Research data.xlsx

description: All data was collected from APA, PePSIC, SciELO, Scopus, and Web of Science databases, using keywords that could retrieve studies of interest to answer the research question. Accordingly, the following keywords related to the main themes of the research were chosen: athletes, sports, gender, discrimination, and LGBT+.
DOI: 10.11583/dtu.24305236.v1
title: <b>Dissolved organic matter in Central-Eastern Arctic Ocean during the NABOS 2018 cruise</b>

description: This dataset consists of data from 318 water samples collected during the NABOS cruise in August-September 2018. Water samples were collected over the water column (down to max. 250 m) at 58 stations. Those stations covered different hydrographic regimes, with stations under influence of the Atlantic inflow into the Arctic Ocean in the Nansen basin, as well as the influence of riverine inputs on the Siberian shelves. In this dataset we present results on dissolved organic matter, specifically the dissolved organic carbon (DOC) concentrations, colored dissolved organic matter (CDOM) absorption coefficient at 350 nm (a350) and the spectral slope of the CDOM absorption between 275-295 nm (S275_295). We additionally present the correspondent salinity data for each sample.
DOI: 10.6084/m9.figshare.21657643.v1
title: A new small-bodied ankylosaurian dinosaur from the Upper Cretaceous of North Patagonia (Río Negro Province, Argentina)

description: The most representative ankylosaurian remains from Argentina have been found in sediments of the Allen Formation (Campanian–Maastrichtian) in Salitral Moreno, Río Negro Province. Several authors have discussed the identity and history of these remains. In this study, we review all published material along with some new remains in order to summarize all the knowledge about these ankylosaurs. Previously published material includes a tooth, dorsal and anterior caudal vertebrae, a femur and several osteoderms. The new remains include synsacral and caudal elements, a partial femur and osteoderms. The anatomy of the tooth, the synsacrum, the mid-caudal vertebra, the femur and the osteoderms, and the histology of the post-cervical osteoderms, support a nodosaurid identification, as proposed in previous descriptions of the Salitral Moreno material. <i>Patagopelta cristata</i> gen. et sp. nov. is a new nodosaurid ankylosaur characterized by the presence of unique cervical half-ring and femoral anatomies, including high-crested lateral osteoderms in the half rings and a strongly developed muscular crest in the anterior surface of the femur. The ∼2 m body length estimated for <i>Patagopelta</i> is very small for an ankylosaur, comparable with the dwarf nodosaurid <i>Struthiosaurus</i>. We recovered <i>Patagopelta</i> within Nodosaurinae, related to nodosaurids from the ‘mid’-Cretaceous of North America, contrasting the previous topologies that related this material with Panoplosaurini (Late Cretaceous North American nodosaurids). These results support a palaeobiogeographical context in which the nodosaurids from Salitral Moreno, Argentina, are part of the allochthonous fauna that migrated into South America during the late Campanian as part of the First American Biotic Interchange. https://zoobank.org/urn:lsid:zoobank.org:pub:FBA24443-F365-49FD-A959-10D2848C2400
DOI: 10.6084/m9.figshare.24566995.v1
title: PVC Release V0.1

description: This table contains information on the viruses currently included in the most recent PVC release. Please see the other files in this project to download sequences and additional metadata.Abstract<br><br>Identifying viruses in compositional bulk sequencing data, like metagenomics or metatranscriptomics, is of increasing interest to the scientific community. However, small, repetitive, and poorly characterized genomes haunt viral reference databases, so accurately estimating the viral composition of a community is difficult. Here, we present both 1) the Pan Viral Compendium (PVC), a quality-controlled database generated from known viral life alongside 2) an aligner, Xtree, optimized for clade-specific, high sensitivity and specificity viral genome alignment. The PVC is a dereplicated set of viral genomes from nine estabilished databases, representing 2,851,990 viruses when dereplicated at 99% identity. We provide taxonomic and host species annotations, quality control metrics for every genome, and indexed alignment databases for use with Xtree. We additionally benchmarked Xtree, identifying its overall accuracy in viral identification in complex communities across taxonomic ranks and within specific clades, identifying parameters (e.g, specific databases, coverage thresholds) for quantifying precision viral abundances at even the species level. In total, the PVC and its companion aligner will enable strain-resolved viral metagenomics and metatranscriptomics that can be easily optimized to a given user's specific needs.
DOI: 10.6084/m9.figshare.4129080.v1
title: Isidorella transcriptomic data for review

description: This folder has the data for reviewers of the RNA-seq paper for <i>Isidorella newcombi </i>exposed to copper. It contains: - the raw data for each each of the treatment replicates (Labelled A1_1 to B3_2) saved as fq files, - alignment data (saved as: All-unigene FA File, and,
DOI: 10.6084/m9.figshare.20477370.v1
title: Lung cancer

description: Dataset and Script
DOI: 10.6084/m9.figshare.28616045.v1
title: Metabolome and transcriptome analysis of anthocyanin biosynthesis reveal key metabolites and candidate genes in red-stemmed alfalfa (<i>Medicago sativa</i>)

description: Background: Alfalfa (<i>Medicago sativa </i>L.) serves as a vital high-quality forage resource, especially in tropical and subtropical regions where there is a deficiency of protein-rich feed. The red pigmentation of stem of space mutated alfalfa was mainly caused by anthocyanin accumulation. However, investigations into the mechanisms governing anthocyanin biosynthesis in alfalfa stems have been scarce. Result: In this study, we conducted combined transcriptome and metabolome analyses on two types of alfalfa stems: space mutation red-stemmed alfalfa and non-space mutation green-stemmed alfalfa (control). Profiling of the anthocyanin metabolome unveiled 45 metabolites linked to anthocyanin biosynthesis, with cyanidin-3-O-glucoside, pelargonidin-3-O-arabinoside, delphinidin-3-O-(6-O-acetyl)-glucoside, and kaempferol-3-O-rutinoside identified as the primary anthocyanins of red-stemmed alfalfa. Transcriptome analysis revealed 72 differentially expressed genes related to anthocyanin biosynthesis pathways, of which 54 genes were highly expressed in red stems, including 12 <i>PAL</i>s (phenylalanine ammonia-lyase), 22 <i>4CL</i>s (4-coumaroyl: CoA-ligase), eight <i>CHS</i>s (chalcone synthase), three <i>F3H</i>s (flavanone 3-hydroxylase), two <i>ANR</i>s (anthocyanidin reductase), three <i>DFR</i>s (dihydroflavonol-4-reductase), three <i>ANS</i>s (anthocyanidin synthase), and one <i>FLS</i> (flavonol synthase) gene. These genes are likely pivotal for anthocyanin biosynthesis in red-stemmed. Co-expression analysis of differentially expressed genes and relative contents of differentially expressed anthocyanin showed that each anthocyanin was closely related to multiple genes, and anthocyanin accumulation process was regulated by multiple genes. The expressions of these genes were significantly positively correlated with the relative contents of cyanidin-3-O-glucoside, pelargonin-3-O-arabinoside, and kaempferol-3-O-rutin. Conclusion: Overall, the expression patterns of <i>PAL</i>, <i>4CL</i>, <i>CHS</i>, <i>F3H</i>, <i>ANR</i>, <i>DFR</i>, <i>ANS</i>, and <i>FLS </i>structural genes in anthocyanin biosynthesis pathway were closely related to the composition and content of anthocyanins. Different anthocyanins’ accumulation patterns may result in the different stem colors of alfalfa. These findings provide comprehensive insights into the molecular mechanisms for anthocyanin biosynthesis in red-stemmed alfalfa.<br>
DOI: 10.6084/m9.figshare.23744652.v1
title: Data for "From desiccation to re-integration of the Yellow River since the last glaciation"

description: Dataset S1: Detrital zircon U-Pb age data. Dataset S2: Geochemical elements data (Major and trace elements, including rare-earth elements). Dataset S3: Sr isotope data shown in Main Text Fig. 3a. Code S1: A MATLAB-based method for calculating the crustal flexural deformation by a water body.
DOI: 10.6084/m9.figshare.7145855.v1
title: Supplementary Material for: Evidence of a Continuum of Trait Mindfulness Deficits in Psychiatric Disorders

description: Medicine
DOI: 10.6084/m9.figshare.26404144.v2
title: Data set for Understanding role of institutional structures in supporting implementation of prime vendor system and future implication of health commodities supply chain: A data set case study of Tanzania Main Land

description: <b>Keywords:</b> Institutional structures, Prime Vendor System, Supply Chain Management, Medical Stores Department, Knowledge levels, Influencing factors, Perception, Practice, Interactive Effect, Performance of Prime Vendor System Health commodities, National Pharmaceutical Action Plan and National PVS Implementation Manual.<b>Introduction:</b>The executions/implementation of prime vendor system is anchored in the Government's structures starting from health facility level up to the National level ,the study aimed at understanding the roles of institutional structures in supporting fidelity of implementation for prime vendor system and suggestions the future implications on health commodities supply chain in Tanzania.
DOI: 10.6084/m9.figshare.27693300.v1
title: <b>Thyroid cancer survival and prognostic factors in Yantai, China</b><b> </b><b>(2012-2022):</b><b>a</b><b> population-based study</b>

description: Thyroid cancer patient data was obtained from theYantai Cancer Registry Center. Cancer information was reported by medical institutions at all levels, including local hospitals and community health centers. The prognostic factors of thyroid cancer analyzed in our study were vital status, period of diagnosis, gender, age group, place of residence, occupational class, tumor site, pathological type and clinical stage. More detailed clinical data can be obtained from the corresponding author upon reasonable request, with the permission of the Yantai Cancer Registry.
DOI: 10.6084/m9.figshare.c.3623579_d2.v2
title: Additional file 1: Table S1. of Rubus occidentalis alleviates hyperalgesia induced by repeated intramuscular injection of acidic saline in rats

description: Mechanical withdrawal threshold at ipsilateral site. Rats were injected intraperitoneally with ROE at the indicated doses after the development of hyperalgesia. ROE, Rubus occidentalis extract; BI, before injection; AI, after injection. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.688002.v1
title: Pupil size reconstruction examples

description: [These are examples that accompany the manuscript, also uploaded on FigShare.] Here I describe a simple way to reconstruct pupil-size data during eye blinks. Blinks are detected using a velocity threshold and reconstructed using cubic-spline interpolation. Although it is debatable whether this reconstruction procedure is theoretically meaningful, it has considerable practical benefits during analysis and data presentation, compared to treating blinks as periods of missing data.
DOI: 10.6084/m9.figshare.19499129.v1
title: patches and local annotations, slide 195, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28190486.v1
title: Final database of SECONDs Italian version

description: Final database of SECONDs Italian validation.
DOI: 10.6084/m9.figshare.28684838.v1
title: Supplementary Material for: Excellent response to trastuzumab deruxutecan of a large medullary metastasis from HER2-positive breast cancer: A case report

description: Introduction: Brain metastasis is a serious complication in human epidermal growth factor receptor 2 (HER2)-positive breast cancer. Brainstem metastases are particularly challenging to treat because of the high risks associated with surgery and stereotactic radiosurgery. Case Presentation: We present a case of a 56-year-old woman with HER2-positive breast cancer who developed multiple brain metastases, including a large medullary lesion, 9 months after surgery confirming a pathological complete response to standard trastuzumab plus pertuzumab-based neo-adjuvant chemotherapy, without extra-cranial lesions. Surgery was deemed infeasible because the lesion’s location and size posed high risks of toxicity from stereotactic radiosurgery. Promising intra-cranial responses to trastuzumab deruxutecan (T-DXd) have been reported; therefore, T-DXd was chosen. Remarkable symptomatic improvements were observed within days after initiating T-DXd. Imaging confirmed radiographic responses and metabolic response indicated by the absence of uptake of 11C‐methionine on positron emission tomography-computed tomography. No evidence of relapse has been observed after the 14 months since the initiation of T-DXd. Conclusion: This case indicates the efficacy of T-DXd in treating large medullary metastases, achieving rapid and sustained responses even in high-risk situations where conventional therapies may not be suitable. Furthermore, the fact that the brain metastases occurred after pathological complete response without extra-cranial lesions may indicate the superiority of T-DXd over conventional anti-HER2 antibodies for brain metastasis. This case underscores the potential of T-DXd as a viable treatment option for brain metastases. Further studies are required to establish its safety and efficacy in similar high-risk scenarios.
DOI: 10.6084/m9.figshare.24198288.v3
title: The matlab program used to plot Figure 6

description: The global cold chain logistics market is witnessing a significant upswing, driven by the rising demand for perishable food products and increasing shipment volumes worldwide. Technological advancements are leading to a more intelligent and digitally enabled cold chain logistics system. However, the high loss rate of fresh agricultural products in China poses a significant threat to the country's food security. Therefore, it is imperative to explore innovative solutions, such as blockchain, to address the challenges of traditional cold chain logistics. In this paper, inspired by the prospect theory and evolutionary game theory, we propose an evolutionary game model to analyze the behavioral strategies of the tripartite of n-level cold chain participants, consumers, and government. Using MATLAB software, the numerical simulation of the game path of this tripartite theory is conducted, and the influence of variable parameters on the evolutionary process and outcomes of the system is analyzed. The results the following: (1) The development of an effective cold chain supply chain system can be divided into three stages, and blockchain technology plays a pivotal role in creating a seamless cold chain environment. The cost of blockchain adoption, government rewards, as well as penalties can significantly influence the behavioral choices of the three stakeholders. (2) The behavior of individual cold chain participants has a strong negative externality, which can impact the behavior of others. We also find that the larger the scale of the cold chain, the lower the probability of default by the participants. (3) The government's adoption of blockchain technology and the implementation of effective incentive policies can foster the successful development of the cold chain blockchain infrastructure. Our research contributes to the theoretical understanding of cold chain logistics decision making and policy creation for the tripartite stakeholders, including cold chain participants, consumers, and government. Our findings can serve as a valuable reference for scientific decision making and policy formulation to encourage the development of a robust cold chain supply chain system.
DOI: 10.6084/m9.figshare.20584149.v1
title: AV Impacts - Meta Analysis

description: This dataset provides the data collected for the Meta Analysis on Autonomous Vehicles Services impacts from mobility simulations.
DOI: 10.6084/m9.figshare.4696168.v1
title: Minimum Credence Test

description: <b>R script for Minimum Credence statistical test for comparing mixed samples. The test evaluates maximum possible population standard deviation from a reference sample and then applies this estimate to mixed samples for comparisons. </b><b>In case the reference sample is less than 8, chi-squared approximation is used to find confidence interval for population standard deviation. Otherwise, the test bootstraps corrected median absolute deviation of the reference sample to obtain bias-corrected accelerated confidence interval for population standard deviation. </b><b>This script is adapted for RFA soil analysis, but can be used elswhere if method=0. If method=1, the test extracts GOST metrological data (between-lab analytical error) from the excel file, and must be corrected for every specific analysis. </b><b>The test implies homogeniety of variances among groups, and the studied parameter must average additively (i. e. arithmetic mean of individual samples is equal to mixed sample) in order to use mixed samples.</b><br>For any questions/remarks please contact me at: fastovetsilya@yandex.ru
DOI: 10.6084/m9.figshare.24219961.v1
title: dataset without glass transition temperature

description: dataset without glass transition temperature
DOI: 10.6084/m9.figshare.5683141.v1
title: MOESM1 of Random and independent sampling of endogenous tryptic peptides from normal human EDTA plasma by liquid chromatography micro electrospray ionization and tandem mass spectrometry

description: Additional file 1. DHP pass 17 distinct protein matrix.
DOI: 10.5525/gla.researchdata.1871
title: Quantum cascade laser spectrometer characterization
DOI: 10.6084/m9.figshare.28898708.v1
title: Source Code C++

description: The non-linearity of symmetric block cryptographic algorithms, which is crucial for resisting linear and differential cryptanalysis, depends on the design of substitution boxes. This work proposes a novel scheme, combining opposition-based learning with graph-based representation to be integrated into population-based metaheuristics. This scheme is used to address the 8x8 S-Box design problem by three swarm intelligence metaheuristics.
DOI: 10.6084/m9.figshare.24310705.v1
title: interpersonal relationship.xlsx

description: <b>Interpersonal Relationship and Self-Esteem</b>
DOI: 10.15468/dl.f9acnc
title: Occurrence Download

description: A dataset containing 2340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Noctua janthe Borkhausen, 1792"
 ]
}

 The dataset includes 2340 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009551-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23694345.v1
title: SILVA_138_trimmed_18smini_dada2_names.fasta

description: This is a reference library for an 18S primer pair. See here for details - https://zenodo.org/badge/latestdoi/134130931
DOI: 10.6084/m9.figshare.26017957.v1
title: Telecommunications Industry Satisfaction - Raw Data

description: Raw data of a paper entitled "<b>Factors Affecting Customer Satisfaction and Loyalty in Telecommunications Industry in the Philippines: A SERVQUAL and Customer Satisfaction Index Approach</b>Raw"
DOI: 10.34740/kaggle/dsv/11635918
title: Hacker News Cumulative Data
DOI: 10.6084/m9.figshare.24288667.v1
title: Burian_annex_2 from Drivers of microbial food-web structure along productivity gradients

description: R code of SEM
DOI: 10.6084/m9.figshare.7435385.v1
title: Skull-stripped MRI GBM Datasets (and Segmentations)

description: Skull-stripped MRI GBM Datasets. Please use the following citations if you use them in your work:<br><br>L. Lindner, D. Wild, M. Weber, M. Kolodziej, G. von Campe, J. Egger. Skull-stripped MRI GBM Datasets. Figshare, 2018.<br>J. Egger, et al. GBM Volumetry using the 3D Slicer Medical Image Computing Platform. Sci Rep., 3:1364, 2013.<br>Further Information:<br><br>Ten Contrast-enhanced T1-Weighted MRI Datasets from Patients with pathologically confirmed Glioblastoma Multiforme (GBM) and Manual Expert Segmentations from Neurosurgeons.<br><br>All Datasets are skull-stripped and reformatted to have 260 slices in axial direction. Datasets with a sagittal or coronal scanning direction have been reformatted to an axial direction.<br><br>Note: Only the enhancing tumor and the necrotic core were segmented, since these are currently the areas of main interest in clinical practice. Other regions, such as a surrounding edema, are typically not delineated in clinical routine, since these annotations do often not accurately reflect the true state.<br><br>
DOI: 10.6084/m9.figshare.24647616.v1
title: curated dataset MHCI-Mana

description: Excel dataset for <i>Mastomys natalensis </i>caught in Nigeria as part of the study Olayemi et al. (XXX) Plos Neglected DiseasesSample_No: unique identifierSex: male (m) or female (f)ELWmg: eye lens weight in milligramsWeight: body mass in milligramsVillage: Samples municipalityGenus: Taxonomic genus species: Taxonomic speciesLASV_PCR: presence of active Lassavirus infection detectable via PCRLASV_IgG: previous Lassavirus infection detectable via antibodiesManaMHCI*001-195: presence-absence matrix of all MHC alleles identified in M. natalensisNo_of_alleles: individual allelic MHC diversity as number of unique allelesST01-24: presence-absence matrix of all MHC supertypes identified in M. natalensisNo_of_STs: individual supertype MHC diversity as number of unique supertypes<br>