cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-2134365511
title: Observation of the solid-solid and liquid-solid phase transitions in Gallium (Ga) at the µs-timescale

description: The proposal aims to measure the metastability of fluid Ga and examine its crystallization mechanism by varying the compression rate over four orders of magnitude. At high compression rates, significant overcompression of the metastable fluid is expected, similar to the behavior of liquid Ga at ambient pressure, where it can be undercooled to very low temperatures due to a high nucleation barrier. The data will test a recently proposed scaling law for solidification onset under extreme undercooling. The resulting crystal structure from the metastable fluid will be compared with those in the equilibrium phase diagram. Additionally, the experiment will explore how the tendency to form large single crystals under slow compression changes with increased compression rates. This study will use a new platform at ID09, which includes a piezo-driven dynamic diamond anvil cell and microsecond time-resolved XRD measurements with a Jungfrau detector.
DOI: 10.15151/esrf-es-2134371546
title: Resolving Critical Strain Gradients Induced by Laser Processing in SiC Wafer

description: Silicon carbide (SiC) is a hard, wide-bandgap semiconductor with excellent thermal conductivity and high breakdown electric field, making it ideal for power electronics and aerospace applications. Traditional SiC wafer production involves slicing and polishing, but a novel cold split technology has been developed to reduce material loss. This technique uses picosecond or nanosecond lasers to induce controlled subsurface cracks in SiC boules without surface damage. Rapid cooling then creates thermal stress to cleave the wafer. Laser parameters like wavelength, power, and pulse duration are critical in avoiding defects such as microcracks. However, the relationship between these parameters and wafer quality is not well understood. This proposal aims to map mosaicity and strain fields in laser-processed SiC using DFXM, exploring the correlation between laser conditions, damage zone characteristics, and final wafer properties.
DOI: 10.15151/esrf-es-2134375696
title: Tracking S poisoning of mono-/bimetallic Pd-based catalysts for CH4 removal by operando tender X-ray HERFD-XANES measurements

description: Pd-based catalysts are known to show the highest performance during the reduction of methane emissions, while their stability is improved by using Pd-Pt bimetallic systems. However, their application in technical systems is challenged due to their high sulfur poisoning sensitivity. By conducting systematic operando HERFD-XANES measurements at the Pd L3-edge, this study aims at obtaining new insights into the subtle changes in the electronic and chemical state of the noble metal in Pd/Al2O3 and PdPt/Al2O3 methane oxidation catalysts during the S-poisoning and reductive regeneration.[4] The outcome of the spatially resolved investigations is of high relevance for both the scientific and industrial community considering the broad impact of S-poisoning on various noble metal-based catalytic systems.
DOI: 10.15151/esrf-es-2134382780
title: Tomographic surface X-ray diffraction at ESRF-EBS

description: We are developing Tomographic Surface X-ray Diffraction (TSXRD) for operando surface-structure measurements of polycrystalline samples. This enables a direct comparison of grains with different surface orientations under similar conditions, as well as studies of more realistic model systems than single crystals. We have previously performed measurements at beamline P21.2 at PETRA III and developed software to map the surface grains and extract Crystal Truncation Rods (CTRs) and superstructure rods (SRs) for surface studies. Here, we propose to implement this method at ID31 to make use of the high brilliance of a fourth-generation synchrotron, for which the method was originally intended. Mapping the surface at P21.2 takes about 2 hours. Making full use of the higher brilliance at ID31 would push down the time to minutes, making the method suitable for operando measurements.
DOI: 10.15151/esrf-es-2134382832
title: Probing the charge order and its excitations/fluctuations across the pseudogap critical doping in La-based superconducting cuprates

description: We propose to perform resonant inelastic x-ray scattering (RIXS) at the Cu L3-edge to investigate the evolution of the charge order in overdoped La1.8–xEu0.2SrxCuO4. We aim to capture its behavior across the pseudogap critical doping by studying whether it persists above p* and has a static or dynamical character. By comparing these data to recent NMR results, we expect to shed light on the respective role of the charge / spin orders on the emergence of the pseudogap and their relative connection to a possible quantum phase transition.
DOI: 10.6084/m9.figshare.27115891.v1
title: Dai et al. dataset.xlsx

description: The file is the dataset for the manuscript entitled 'A Novel Non-destructive Mechanical Strength Prediction Method of Bio-healed Rock Fractures with Multi-scale Defects' by Dai et al., including defect content, defect size, compressive strength, materials and testing condition data shown in the manuscript.
DOI: 10.17045/sthlmuni.22555465
title: Supplementary Fig. 2c | Pluripotency markers in genome-edited iPSC lines

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]Expression of pluripotency markers in genome-edited iPSC lines by immunofluorescene microscopy.The microscopy file format is ND2 which can be opened with the free standalone program NIS-Elements Viewer (Nikon). More information about the software and file format can be found here: https://www.microscope.healthcare.nikon.com/products/software/nis-elements/software-resources
DOI: 10.17045/sthlmuni.22555465.v1
title: Supplementary Fig. 2c | Pluripotency markers in genome-edited iPSC lines

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]Expression of pluripotency markers in genome-edited iPSC lines by immunofluorescene microscopy.The microscopy file format is ND2 which can be opened with the free standalone program NIS-Elements Viewer (Nikon). More information about the software and file format can be found here: https://www.microscope.healthcare.nikon.com/products/software/nis-elements/software-resources
DOI: 10.6084/m9.figshare.27115891
title: Dai et al. dataset.xlsx

description: This document is titled "A Paradigmatic Prediction Approach for Evaluating the In situ Mechanical Strength of Rock Mass: Insight from Full scale Mechanical Testing and Calcareous Reinforced Layer Case", which includes the defect content, defect size, compressive strength, material, and testing condition data shown in the manuscript.
DOI: 10.6084/m9.figshare.27115891.v3
title: Dai et al. dataset.xlsx

description: This document is titled "A Paradigmatic Prediction Approach for Evaluating the In situ Mechanical Strength of Rock Mass: Insight from Full scale Mechanical Testing and Calcareous Reinforced Layer Case", which includes the defect content, defect size, compressive strength, material, and testing condition data shown in the manuscript.
DOI: 10.6084/m9.figshare.27115891.v2
title: Dai 等人 dataset.xlsx

description: This document is titled "A Paradigmatic Prediction Approach for Evaluating the In situ Mechanical Strength of Rock Mass: Insight from Full scale Mechanical Testing and Calcareous Reinforced Layer Case", which includes the defect content, defect size, compressive strength, material, and testing condition data shown in the manuscript.
DOI: 10.4121/0c2e30f4-397a-4f51-8bf9-65167dc545fa
title: Data underlying the PhD dissertation: High-performance integrated photonics with amorphous silicon carbide

description: This project contains the data and plotting scripts for all figures in the main manuscript and supplementary documents shown in the thesis. In particular, there are two folder with the respective two directions that the project followed ("High quality amorphous silicon carbide for hybrid photonic integration deposited at low temperature" and "Magic silicon dioxide for widely tunable integrated photonic circuits"). Each individual folder contains a readme file with the details about the authors, contact details, link to the published article, specific topic of research and measurement equipment among others. All data is saved in format .cvs or .txt and can be plotted using the python scripts (format .txt) provided in the subfolders (README_plot). The results have been published in https://pubs.acs.org/doi/10.1021/acsphotonics.3c00968 and https://pubs.acs.org/doi/10.1021/acsphotonics.4c01373
DOI: 10.4121/0c2e30f4-397a-4f51-8bf9-65167dc545fa.v1
title: Data underlying the PhD dissertation: High-performance integrated photonics with amorphous silicon carbide

description: This project contains the data and plotting scripts for all figures in the main manuscript and supplementary documents shown in the thesis. In particular, there are two folder with the respective two directions that the project followed ("High quality amorphous silicon carbide for hybrid photonic integration deposited at low temperature" and "Magic silicon dioxide for widely tunable integrated photonic circuits"). Each individual folder contains a readme file with the details about the authors, contact details, link to the published article, specific topic of research and measurement equipment among others. All data is saved in format .cvs or .txt and can be plotted using the python scripts (format .txt) provided in the subfolders (README_plot). The results have been published in https://pubs.acs.org/doi/10.1021/acsphotonics.3c00968 and https://pubs.acs.org/doi/10.1021/acsphotonics.4c01373
DOI: 10.5281/zenodo.15671849
title: Supplementary tables for the manuscipt "Structural variants contribute to the gut microbiome, blood metabolic traits, and their causal relationships"
DOI: 10.5281/zenodo.15671850
title: Supplementary tables for the manuscipt "Structural variants contribute to the gut microbiome, blood metabolic traits, and their causal relationships"
DOI: 10.4121/078413f5-c739-48d7-a664-2acb2557bec4
title: Dynamic Laparoscopic Platform (DyLaP) wire chaser crossover study dataset

description: The DyLaP wire chaser crossover study investigates the influence of simulated tissue movement on skill acquisition. A randomized controlled crossover study was conducted. Data was gathered using the Lapron boxtrainer system. This dataset comprises the objective performance parameter outcomes (time to completion, mean force, maximum force and path length for individual participants (anonymized).
DOI: 10.4121/078413f5-c739-48d7-a664-2acb2557bec4.v1
title: Dynamic Laparoscopic Platform (DyLaP) wire chaser crossover study dataset

description: The DyLaP wire chaser crossover study investigates the influence of simulated tissue movement on skill acquisition. A randomized controlled crossover study was conducted. Data was gathered using the Lapron boxtrainer system. This dataset comprises the objective performance parameter outcomes (time to completion, mean force, maximum force and path length for individual participants (anonymized).
DOI: 10.5281/zenodo.15671860
title: The effects of continuum fitting on Lyman-$\alpha$ forest correlations
DOI: 10.5281/zenodo.15671861
title: The effects of continuum fitting on Lyman-$\alpha$ forest correlations
DOI: 10.48573/7h1z-vp65
title: ÜGK / COFO / VECOF 2023, Languages Grade 11: Scientific Use Files (SUF)
DOI: 10.48573/nq2y-gh67
title: ÜGK / COFO / VECOF 2023, Languages Grade 11: Scientific Use Files (SUF)
DOI: 10.15468/dl.ngxay9
title: Occurrence Download

description: A dataset containing 12134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "Month is July",
 "Year 2002-2002"
 ]
}

 The dataset includes 12134 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048545-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17045/sthlmuni.22555474
title: Supplementary Fig. 2d | FUS localization in genome-edited iPSC lines

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]FUS localization in genome-edited iPSC linesThese files are immunofluorescent stainings of FUS localization in genome-edited iPSC-linesThe microscopy file format is ND2 which can be opened with the free standalone program the NIS-Elements Viewer (Nikon). More information about the software and file format can be found here: https://www.microscope.healthcare.nikon.com/products/software/nis-elements/software-resources<br>
DOI: 10.17045/sthlmuni.22555474.v1
title: Supplementary Fig. 2d | FUS localization in genome-edited iPSC lines

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]FUS localization in genome-edited iPSC linesThese files are immunofluorescent stainings of FUS localization in genome-edited iPSC-linesThe microscopy file format is ND2 which can be opened with the free standalone program the NIS-Elements Viewer (Nikon). More information about the software and file format can be found here: https://www.microscope.healthcare.nikon.com/products/software/nis-elements/software-resources<br>
DOI: 10.15468/dl.yzg7ku
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is INSDC Sequences",
 "TaxonKey is Anopheles crucians B"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048546-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26182/7vmz-yz14
title: Ocean model surface velocities and temperatures at the North Australian Basin
DOI: 10.5281/zenodo.15671821
title: ClinvArbitration data release - June 2025

description: This file is a tarball representing the ClinvArbitration re-summary of ClinVar's raw submissions. The ClinvArbitration project represents an altered aggregation of the individual submissions, preferring to break ties when presented with submissions which don't all agree, instead of defaulting to a rating of "conflicting interpretations of pathogenicity". This leads to more variants being presented as either B/LB, or P/LP, and a reduced grey area between.

This work contains two main elements:



The raw results of the re-interpretation of ClinVar, presented as a TSV and a Hail Table

A second project to build on top of this and deliver annotations approximating the PM5 consequence category according to the ACMG criteria.


This second part is not easily applied by existing tools, and represents the following:



For each Pathogenic SNV in ClinVar, we annotate the variants using BCFtools CSQ. For each Pathogenic SNV which is also a Missense variant, we reogrganise the data to be indexed on Transcript and Codon number. This can then be inverted to annotate genetic variation - if a variant is a Missense, and a ClinVar pathogenic Missense variant exists affecting the same Codon, we annotate the Missense with co-located known pathogenic ClinVar entries, in case this contributes to the interpretation of the variant under investigation.


I would like to acknowledge that since this side project started, a substantial curation effort has been made in ClinVar, so the gap between the standard and re-interpreted ClinVar results has closed substantially. The exact data format presented here is required by Talos, a whole-Exome/Genome variant prioritisation tool, so despite the increasing consistency between the two results sets this exact data format should continue to be distributed.

These monthly summaries were previously released on the GitHub Release Page for the ClinvArbitration tool, but the max data size for attachments has been reached. Going forward, Zenodo makes sense as a home for release of these files.
DOI: 10.15468/dl.vb759q
title: Occurrence Download

description: A dataset containing 1615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, India, Myanmar, Nepal, Bhutan, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Prosotas nora (Felder, 1860)"
 ]
}

 The dataset includes 1615 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048548-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17045/sthlmuni.22555564
title: Supplementary Fig. 3b | Motor neuron markers in heterogenous differentiation protocol

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]Confocal immunofluorescence microscopy of in-vitro differentiated ALS motor neurons for expression of motor neuron markers using the heterogenous protocol.Sample meta information is available as TXT file.The file format is .czi, through the ZEN software (Zeiss). Zeiss recommends using ImageJ and the ImageJ-based Fiji software package.<br>Information about the microscopy file format CZI can be found here: https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html<br>
DOI: 10.17045/sthlmuni.22555564.v1
title: Supplementary Fig. 3b | Motor neuron markers in heterogenous differentiation protocol

description: This item is part of the <b>Figshare Project</b>:<br><b>Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution</b><br>From <i>Data Availability Statement</i> for the forthcoming paper in <i>Nature Communications</i> entitled:<b>Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS</b>"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The <i>C9orf72</i>-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."--------------------------------------------[Item specific description:]Confocal immunofluorescence microscopy of in-vitro differentiated ALS motor neurons for expression of motor neuron markers using the heterogenous protocol.Sample meta information is available as TXT file.The file format is .czi, through the ZEN software (Zeiss). Zeiss recommends using ImageJ and the ImageJ-based Fiji software package.<br>Information about the microscopy file format CZI can be found here: https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html<br>