cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.j0r00
title: Data from: On fitness and partial migration in a large herbivore – migratory moose have higher reproductive performance than residents

description: Partially migratory populations comprise both resident and migratory
 individuals. These tactics may coexist if their demographic contribution
 to future generations (i.e. fitness) are equal or vary temporally with
 environmental conditions, or if individuals switch between being migrant
 and resident. Alternatively, the choice of movement tactic can be based on
 individual attributes such as age, competitive ability or personality. In
 the latter cases, the two tactics are not expected to have similar average
 fitness. In this study, we examined the effect of movement tactic on
 reproductive performance and survival of 82 GPS-marked female moose and
 their offspring in a partial migratory population in central Norway. The
 results indicated higher growth in the migrating part of the population
 because migrating females produced more twins than resident females. We
 found no differences in pregnancy rates or survival of adults or their
 offspring, indicating a net fitness benefit of being migrant. We found the
 average shoulder height of residents to be slightly lower than of
 migrants, but doubt that this affected their migration ability. A more
 likely explanation is that migratory females are both more fecund and grow
 bigger because of better conditions in their summer ranges. This may be a
 temporal phenomenon if the fitness differences between migratory and
 resident moose vary according to environmental fluctuations.
description: Data - The effect of
 movement tactic on twinning rateData used to analyze the
 effect of movement tactic on twinning rate.dryad_twins.txtData - shoulderheight and twinningData used to compare shoulderheight of resident and migrant female moose. And to test the effect of shoulderheight on the probabilty of having twins.dryad_shoulderheight.txtData - moose and altitudeData used to examine if migrants and residents used different altitudes during the year.dryad_altitude.txtData - summersurvivalcalvesData used to analyze summer survival of calves in relation to their mothers movement tactic.dryad_summersurvivalcalves.txtData - totalcalfsurvivalData used to analyze first year survival of calves in relation to their mothers movement tactic.dryad_totalcalfsurvival.txt
DOI: 10.5061/dryad.07850
title: Data from: Fisher’s geometrical model and the mutational patterns of antibiotic resistance across dose gradients

description: Fisher's geometrical model (FGM) has been widely used to depict the
 fitness effects of mutations. It is a general model with few underlying
 assumptions that gives a large and comprehensive view of adaptive
 processes. It is thus attractive in several situations, e.g. adaptation to
 antibiotics, but comes with limitations, so that more mechanistic
 approaches are often preferred to interpret experimental data. It might be
 possible however to extend FGM assumptions to better account for
 mutational data. This is theoretically challenging in the context of
 antibiotic resistance because resistance mutations are assumed to be rare.
 In this paper, we show with Escherichia coli how the fitness effects of
 resistance mutations screened at different doses of nalidixic acid vary
 across a dose-gradient. We found experimental patterns qualitatively
 consistent with the basic FGM (rate of resistance across doses, gamma
 distributed costs) but also unexpected patterns such as a decreasing mean
 cost of resistance with increasing screen-dose. We show how different
 extensions involving mutational modules and variations in trait covariance
 across environments, can be discriminated based on these data. Overall,
 simple extensions of the FGM accounted well for complex mutational effects
 of resistance mutation across antibiotic doses.
description: Competitions experiments
 and gyrA mutationsIn this file, you can
 find: tab 1) legend for tables, tab 2) raw data of fluorescence from
 competition experiments and estimations of selection coefficients, tab 3)
 mutations detected in the gyrA gene associated with each mutant, tab 4)
 raw data for calibration curves, tab 5) primers sequences for gyrA
 geneData-FGM_antibiotic_resistance-Harmand_et_al.xlsx
DOI: 10.5061/dryad.t9d41
title: Data from: Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers

description: The woodland strawberry, Fragaria vesca, holds great promise as a model
 organism. It not only represents the important Rosaceae family that
 includes economically important species such as apples, pears, peaches and
 roses, but it also complements the well-known model organism Arabidopsis
 thaliana in key areas such as perennial life cycle and the development of
 fleshy fruit. Analysis of wild populations of A. thaliana has shed light
 on several important developmental pathways controlling, for example,
 flowering time and plant growth, suggesting that a similar approach using
 F. vesca might add to our understanding on the development of rosaceous
 species and perennials in general. As a first step, 298 F. vesca plants
 were analyzed using microsatellite markers with the primary aim of
 analyzing population structure and distribution of genetic diversity. Of
 the 68 markers tested, 56 were polymorphic, with an average of 4.46
 alleles per locus. Our analysis partly confirms previous classification of
 F. vesca subspecies in North America and suggests two groups within the
 subsp. bracteata. In addition, F. vesca subsp. vesca forms a single global
 population with evidence that the Icelandic group is a separate cluster
 from the main Eurasian population.
description: RawdataBinary microsatellite data
DOI: 10.15468/dl.edw7et
title: Occurrence Download

description: A dataset containing 156969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Popillia japonica"
 ]
}

 The dataset includes 156969 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001444-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwzs7g
title: Occurrence Download

description: A dataset containing 8563316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20 -38,55 -38,55 38,-20 38,-20 -38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Charadriiformes"
 ]
}

 The dataset includes 8563316 records from 316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001448-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.36f3q
title: Data from: Selective breeding and selection mapping using a novel wild-derived heterogeneous stock mice revealed two closely-linked loci for tameness

description: Tameness is a major behavioral factor for domestication, and can be
 divided into two potential components: motivation to approach humans
 (active tameness) and reluctance to avoid humans (passive tameness). We
 identified genetic loci for active tameness through selective breeding,
 selection mapping, and association analysis. In previous work using
 laboratory and wild mouse strains, we found that laboratory strains were
 predominantly selected for passive tameness but not active tameness during
 their domestication. To identify genetic regions associated with active
 tameness, we applied selective breeding over 9 generations for contacting,
 a behavioural parameter strongly associated with active tameness. The
 prerequisite for successful selective breeding is high genetic variation
 in the target population, so we established and used a novel resource,
 wild-derived heterogeneous stock (WHS) mice from eight wild strains. The
 mice had genetic variations not present in other outbred mouse
 populations. Selective breeding of the WHS mice increased the contacting
 level through the generations. Selection mapping was applied to the
 selected population using a simulation based on a non-selection model and
 inferred haplotype data derived from single-nucleotide polymorphisms. We
 found a genomic signature for selection on chromosome 11 containing two
 closely linked loci.
description: deposit_data_WHSThe folder contains data for behavior, maximum allele frequencies, and SNPs.
DOI: 10.5061/dryad.00393
title: Data from: Automatic facial mimicry in response to dynamic emotional stimuli in five-month-old infants

description: Human adults automatically mimic others' emotional expressions, which
 is believed to contribute to sharing emotions with others. Although this
 behaviour appears fundamental to social reciprocity, little is known about
 its developmental process. Therefore, we examined whether infants show
 automatic facial mimicry in response to others' emotional
 expressions. Facial electromyographic activity over the corrugator
 supercilii (brow) and zygomaticus major (cheek) of four- to five-month-old
 infants was measured while they viewed dynamic clips presenting
 audiovisual, visual and auditory emotions. The audiovisual bimodal emotion
 stimuli were a display of a laughing/crying facial expression with an
 emotionally congruent vocalization, whereas the visual/auditory unimodal
 emotion stimuli displayed those emotional faces/vocalizations paired with
 a neutral vocalization/face, respectively. Increased activation of the
 corrugator supercilii muscle in response to audiovisual cries and the
 zygomaticus major in response to audiovisual laughter were observed
 between 500 and 1000 ms after stimulus onset, which clearly suggests rapid
 facial mimicry. By contrast, both visual and auditory unimodal emotion
 stimuli did not activate the infants' corresponding muscles. These
 results revealed that automatic facial mimicry is present as early as five
 months of age, when multimodal emotional information is present.
description: isomura_EMGdataRaw EMG data at each trial for the corrugator supercilli (brow) and the zygomaticus (cheek) in each infant. Data for a trial includes EMG activities from 2 sec before to 1 sec after the stumulus (9 sec) onset, which thus shows the activities for 12 seconds in total.
DOI: 10.5061/dryad.p7v21
title: Data from: Genetic and developmental basis for fin shape variation in African cichlid fishes

description: Adaptive radiations are often characterized by the rapid evolution of
 traits associated with divergent feeding modes. For example, the
 evolutionary history of African cichlids is marked by repeated and
 coordinated shifts in skull, trophic, fin and body shape. Here, we seek to
 explore the molecular basis for fin shape variation in Lake Malawi
 cichlids. We first described variation within an F2 mapping population
 derived by crossing two cichlid species with divergent morphologies
 including fin shape. We then used this population to genetically map loci
 that influence variation in this trait. We found that the
 genotype–phenotype map for fin shape is largely distinct from other
 morphological characters including body and craniofacial shape. These data
 suggest that key aspects of fin, body and jaw shape are genetically
 modular and that the coordinated evolution of these traits in cichlids is
 more likely due to common selective pressures than to pleiotropy or
 linkage. We next combined genetic mapping data with population-level
 genome scans to identify wnt7aa and col1a1 as candidate genes underlying
 variation in the number of pectoral fin ray elements. Gene expression
 patterns across species with different fin morphologies and small molecule
 manipulation of the Wnt pathway during fin development further support the
 hypothesis that variation at these loci underlies divergence in fin shape
 between cichlid species. In all, our data provide additional insights into
 the genetic and molecular mechanisms associated with morphological
 divergence in this important adaptive radiation.
description: KeyKey that provides
 information for each data file associated with this
 entry.Body_LMx,y landmark data for body shape in the F2 mapping panelFin_LMx,y landmark data for fin shape in the F2 mapping panelFin_LM_parentalx,y landmark data for fin shape in the parental speciesLinkage Map_Bodylinkage map and body traits for qtl analysisLinkage Map_Finlinkage map and fin traits for qtl analysisParental_Fin_DataVarious fin measures for parental speciesWnt_Modulation_Data_MZFin measures in the species, MZ, following manipulation of the Wnt pathway with small molecules.Wnt_Modulation_Data.csvWnt_Modulation_Data_LF_TRCFin measures in TRC and LF larvae following manipulation of the Wnt pathway with small molecules.
DOI: 10.5061/dryad.3h9s8
title: Data from: Evaluating shell variation across different populations of a freshwater snail

description: The freshwater snail Potamopyrgus antipodarum has become a model system
 for studying invasion ecology, host–parasite coevolution, the maintenance
 of sexual reproduction and ecotoxicology. One understudied aspect of this
 snail is the variation in morphology within and among populations, which
 could provide insights into ecological differences across its native
 range. In this study of 17 New Zealand lake populations of P. antipodarum
 we used linear measurements and geometric morphometrics to compare several
 aspects of shell size and shape. We found that, except for those from Lake
 Te Anau, most lake populations of P. antipodarum differ slightly in shape,
 but differ significantly in size and in the presence of spines, where
 larger and spinier snails are found in deeper regions. These striking
 distinctions in size and shell armature, but not in shape, suggest that
 the various components of form are under different selective regimes.
 Snails from Lake Te Anau are different in both shape and size, implying
 that this population is diverging from the rest of the species in multiple
 ways, making it an interesting study population for further research.
description: rawdata1_shell_variation_freshwater_snailexcel spreadsheet with landmark scores for the shell and operucula, size and spine information for all snails in this study.raw_data_shell_variation_freshwater_snail.xlsxrawdata2_shell_variation_freshwater_snailshell landmarks for all snails in this analysisrawdata3_shell_variation_freshwater_snaillandmark contour for the opercula of all of the snails analyzed in this study.
DOI: 10.5061/dryad.038q1
title: Data from: Climate change upends selection on ornamentation in a wild bird

description: Secondary sexual traits have high heritabilities and are exposed to
 strong, environmentally sensitive selection, and so are expected to evolve
 rapidly in response to sustained environmental change. We examine the
 eco-evolutionary dynamics of ornament expression in a long-term study
 population of collared flycatchers, Ficedula albicollis, in which forehead
 patch size, which positively influences male reproductive success,
 declined markedly over 34 years. Annual fitness selection on forehead
 patch size switched from positive to negative during the study, a reversal
 that is accounted for by rising spring temperatures at the breeding site:
 highly ornamented males were selectively favoured following cold breeding
 seasons but selected against following warm breeding seasons. An
 ‘individual animal model’ describes a decline in the genetic values of
 breeding males during the study, which simulations showed was unlikely to
 result from drift alone. These results are thus consistent with adaptive
 evolution of a sexually selected trait in response to climate change.
description: Analytical
 codeR
 script for the analyses reported in the article.Phenotypic
 measuresPhenotypic records for
 sampled individuals.Selection
 datasetFile detailing the
 annual survival and realised productivity (i.e., number of successfully
 recruited offspring) for sampled males included in the selection
 analyses.Mean spring
 temperaturesMean temperatures (ºC)
 for May and June, as recorded by the Hoburg meteorological station. Data
 for 1980 to 2015.Mean spring
 temperature.txtCensusing collared and
 pied flycatchersTotal number of pied
 flycatchers and plotwise totals of collared flycatchers (FA, FP,
 OJ).txtPedigreeA pedigree file for the sample population, listing the mother (dam) and father (sire) of all phenotyped individuals (where known). Individuals are identified by ringnumbers.
DOI: 10.5061/dryad.14m41
title: Data from: The effect of atomoxetine on random and directed exploration in humans

description: The adaptive regulation of the trade-off between pursuing a known reward
 (exploitation) and sampling lesser-known options in search of something
 better (exploration) is critical for optimal performance. Theory and
 recent empirical work suggest that humans use at least two strategies for
 solving this dilemma: a directed strategy in which choices are explicitly
 biased toward information seeking, and a random strategy in which decision
 noise leads to exploration by chance. Here we examined the hypothesis that
 random exploration is governed by the neuromodulatory locus
 coeruleus-norepinephrine system. We administered atomoxetine, a
 norepinephrine transporter blocker that increases extracellular levels of
 norepinephrine throughout the cortex, to 22 healthy human participants in
 a double-blind crossover design. We examined the effect of treatment on
 performance in a gambling task designed to produce distinct measures of
 directed exploration and random exploration. In line with our hypothesis
 we found an effect of atomoxetine on random, but not directed exploration.
 However, contrary to expectation, atomoxetine reduced rather than
 increased random exploration. We speculate that our results may be due to
 interactions with other neuromodulators that are also affected by
 atomoxetine, or that the reduction in random exploration was driven by a
 drug-related increase in phasic norepinephrine activity rather than in
 baseline norepinephrine levels.
description: Horizon Task
 DataMatlab data files from
 the Horizon task
DOI: 10.5061/dryad.3t5q5
title: Data from: Dissecting nutrient-related co-expression networks in phosphate starved poplars

description: Phosphorus (P) is an essential plant nutrient, but its availability is
 often limited in soil. Here, we studied changes in the transcriptome and
 in nutrient element concentrations in leaves and roots of poplars (Populus
 × canescens) in response to P deficiency. P starvation resulted in
 decreased concentrations of S and major cations (K, Mg, Ca), in increased
 concentrations of N, Zn and Al, while C, Fe and Mn were only little
 affected. In roots and leaves &gt;4,000 and &gt;9,000 genes were
 differently expressed upon P starvation. These genes clustered in eleven
 co-expression modules of which seven were correlated with distinct
 elements in the plant tissues. One module (4.7% of all differentially
 expressed genes) was strongly correlated with changes in the P
 concentration in the plant. In this module the GO term “response to P
 starvation” was enriched with phosphoenolpyruvate carboxylase kinases,
 phosphatases and pyrophosphatases as well as regulatory domains such as
 SPX, but no phosphate transporters. The P-related module was also enriched
 in genes of the functional category “galactolipid synthesis”.
 Galactolipids substitute phospholipids in membranes under P limitation.
 Two modules, one correlated with C and N and the other with biomass, S and
 Mg, were connected with the P-related module by co-expression. In these
 modules GO terms indicating “DNA modification” and “cell division” as well
 as “defense” and “RNA modification” and “signaling” were enriched; they
 contained phosphate transporters. Bark storage proteins were among the
 most strongly upregulated genes in the growth-related module suggesting
 that N, which could not be used for growth, accumulated in typical storage
 compounds. In conclusion, weighted gene coexpression network analysis
 revealed a hierarchical structure of gene clusters, which separated
 phosphate starvation responses correlated with P tissue concentrations
 from other gene modules, which most likely represented transcriptional
 adjustments related to down-stream nutritional changes and stress.
description: Table 1: Dry biomass of
 poplar leaves, stems and roots under high, medium and low P
 supply.Read_me1 contains
 Information for Table 1, Table2, and table 3Table1_Biomass.xlsxTable2_Elements_by_ICPDescription is found in Read_me1Table3_C_NRead_me1 contains the Information for table 3Table4_Gene_Transcript_abundancesee read_me for Table4_Gene_Transcript_abundance
DOI: 10.5061/dryad.77971
title: Data from: Adaptive divergence in flowering time among natural populations of Arabidopsis thaliana: estimates of selection and QTL mapping

description: To identify the ecological and genetic mechanisms of local adaptation
 requires estimating selection on traits, identifying their genetic basis,
 and evaluating whether divergence in adaptive traits is due to conditional
 neutrality or genetic tradeoffs. To this end, we conducted field
 experiments for three years using recombinant inbred lines derived from
 two ecotypes of Arabidopsis thaliana (Italy, Sweden), and at each parental
 site examined selection on flowering time and mapped QTL. There was strong
 selection for early flowering in Italy, but weak selection in Sweden.
 Eleven distinct flowering time QTL were detected, and for each the Italian
 genotype caused earlier flowering. Twenty-seven candidate genes were
 identified, two of which (FLC and VIN3) appear under major flowering time
 QTL in Italy. Seven of eight QTL in Italy with narrow credible intervals
 colocalized with previously reported fitness QTL, in comparison to three
 of four in Sweden. The results demonstrate that the magnitude of selection
 on flowering time differs strikingly between our study populations, that
 the genetic basis of flowering time variation is multigenic with some QTL
 of large effect, and suggest that divergence in flowering time between
 ecotypes is due mainly to conditional neutrality.
description: RIL_DataForSelectionAnalyses3yrsContains RIL mean flowering time, fitness components, and fitness.ReadMe_QTLMappingFilesRead me file for files associated with QTL mapping.MapQTL_F09IT_DTFFExample R script for mapping QTL using R/qtl.genoFile of RIL genotypes, formatted for R/qtl.phenoPhenotype file for RILs, formatted for R/qtl
DOI: 10.5061/dryad.2275g
title: Data from: Transforming water: social influence moderates psychological, physiological, and functional response to a placebo product

description: This paper investigates how social influence can alter physiological,
 psychological, and functional responses to a placebo product and how such
 responses influence the ultimate endorsement of the product. Participants
 consumed a product, "AquaCharge Energy Water," falsely-labeled
 as containing 200 mg of caffeine but which was actually plain spring
 water, in one of three conditions: a no social influence condition, a
 disconfirming social influence condition, and a confirming social
 influence condition. Results demonstrated that the effect of the product
 labeling on physiological alertness (systolic blood pressure),
 psychological alertness (self-reported alertness), functional alertness
 (cognitive interference), and product endorsement was moderated by social
 influence: participants experienced more subjective, physiological and
 functional alertness and stronger product endorsement when they consumed
 the product in the confirming social influence condition than when they
 consumed the product in the disconfirming social influence condition.
 These results suggest that social influence can alter subjective,
 physiological, and functional responses to a faux product, in this case
 transforming the effects of plain water.
description: TRANSFORMING WATER PLOS
 ONE DATASET 11.19.16PLOS ONE DATASET
 11.19.16.csv