cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12423245.v2
title: An Agent Based Model methodology for assessing spread and health systems burden for Covid-19 using a synthetic population from India

description: The attached files are supplementary documents for the research work mentioned in the title: <br>1. The attached excel file contains the synthetic population data, indicating the number of people present in each state on a given day for all the three scenarios. The readers shall acquire the data from the author(s)/ coauthors of this manuscript. <i></i><br>2. Supplementary figures and tables are attached in the word document.
DOI: 10.6084/m9.figshare.18321518.v1
title: Prenatal and Postnatal data

description: Prenatal and perinatal data sets for paper<br>
DOI: 10.6084/m9.figshare.21896802.v1
title: SciSciNet_Authors_Gender

description: SciSciNet_Authors_Gender
DOI: 10.6084/m9.figshare.26370721.v1
title: Supplementary Material for: Clinical implications of C2 lesion in IgA nephropathy: A cohort study

description: Introduction: In 2016, the Oxford Classification of IgA Nephropathy(IgAN) updated its scoring system for the glomerular crescents. Despite this, the clinical significance of crescentic lesions in the updated Oxford classification is still unexplored through prospective cohort studies.
Methods: 134 patients diagnosed with IgAN accompanied with C2 lesions at Peking University First Hospital were consecutively enrolled and prospectively followed up for analysis. Multivariate Cox regression in combination with LASSO regression was used to analyze risk factors associated with end stage kidney disease (ESKD).
Results: During biopsy, the average mean eGFR was 39.3 mL/min/1.73 m2, and the average mean proteinuria was 4.4 g/day. The proportion of kidney failure at 1 year, 2 years, and 3 years were 24%, 34%, and 47%, respectively. The results of LASSO in combination with Cox regression showed that mean arterial pressure (MAP) (Hazard ratio [HR]=1.035, 95% Confidence interval[95%CI] 1.013-1.056, P=0.001), glomerular filtration rate(eGFR) at biopsy (HR=0.968, 95%CI [0.948-0.990], P&lt;0.004) and T2 lesions (HR=2.490, 95%CI [1.179-5.259], P=0.017) were independent risk factor associated with ESKD in patients with C2 lesions. Furthermore, based on univariate analyses, we found that patients with kidney function declined more than 50% within 3 months prior to biopsy or pathological findings indicated a proportion of crescents exceeding 50% were both associated with a poor kidney prognosis. Lastly, when the proportion of the crescent was less than 50%, patients receiving combined steroid and immunosuppressant treatment did not exhibit a better renal prognosis than those receiving steroid only.
Conclusion: Patients diagnosed with IgAN and concurrent C2 lesions exhibited a poor clinical prognosis, necessitating more effective treatment strategies.
DOI: 10.6084/m9.figshare.3179935.v2
title: W3C Data Usage Vocabulary (Data on the Web Best Practices Working Group)

description: As part of the activities of the W3C Data on the Web Best Practices Working Group, the Dataset UsageVocabulary was developed to address aspects related to the consumption of published Web datasets.
DOI: 10.21233/821g-7974
title: Lake Biwa, North Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, North Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ctb5-vn32
title: Ussuriisky Nature Reserve ostracode surface sample dataset

description: Raw data for the Ussuriisky Nature Reserve ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.14340080.v1
title: MIS results

description: In this folder, you will find the files for the MIS results. Each file corresponds to a graph.
DOI: 10.6084/m9.figshare.27604275.v1
title: Data and code.rar

description: Data supporting"<b>Symmetrical response of plant diversity but asymmetrical response of biomass to rain addition and reduction in global grasslands</b>."
DOI: 10.6084/m9.figshare.28439642.v1
title: Deficiency in Platelet 12-Lipoxygenase Exacerbates Inflammation and Disease Severity During SARS-CoV-2 Infection_data.xlsx

description: Platelets, known for maintaining blood balance, also participates in antimicrobial defense. Upon SARS-CoV-2 infection, platelets become hyperactivated, releasing molecules such as cytokines, granule contents, and bioactive lipids. The key effector biolipids produced by platelets include 12-hydroxyeicosatetraenoic acid (12(S)-HETE) and 12(S)-hydroxyeicosatetraenoic acid (12(S)-HETrE), produced by 12-lipoxygenase (12-LOX) and prostaglandins and thromboxane, produced by cyclooxygenase-1. While prostaglandin E2 and thromboxane B2 were previously associated with lung inflammation in severe COVID-19, the role of platelet 12-LOX in SARS-CoV-2 infection remains unclear. Using mice deficient for platelets’ 12-LOX, we report that SARS-CoV-2 infection resulted in higher lung inflammation characterized by histopathological tissue analysis, increased leukocyte infiltrates and cytokine production relative to wild type mice. In addition, distinct platelet and lung transcriptomic changes, including alterations in NLRP1 inflammasome-related gene expression were observed. Mass spectrometry lipidomic analysis in 12-LOX deficient<i> </i>infected mice revealed significant changes in bioactive lipid content, including reduced levels of 12(S)-HETrE that inversely correlated with disease severity. Lastly, platelet 12-LOX deficiency was associated with increased morbidity and lower survival rates relative to WT mice. Overall, this study highlights the complex interplay between 12-LOX-related lipid metabolism and inflammatory responses during SARS-CoV-2 infection. The findings provide valuable insights into potential therapeutic targets aimed at mitigating severe outcomes, emphasizing the pivotal role of platelet enzymes in the host response to viral infections.
DOI: 10.17632/mcb726kcbx
title: Species Distribution Modelling of Corals and Sponges in the Eastern Arctic for Use in the Identification of Significant Benthic Areas

description: Species distribution modelling using a random forest (RF) machine learning approach was used to predict the probability of occurrence and biomass of sponges, sea pens, and large and small gorgonian corals in the Hudson Strait portion of Fisheries and Oceans, Canada's (DFO) Hudson Bay Complex Biogeographic Zone (sponges only), and in the eastern extent (Davis Strait and Southern Baffin Bay) of the Eastern Arctic Biogeographic Zone. A suite of 54 environmental predictor variables from different data sources were used. Models utilized catch records from the DFO multispecies trawl surveys and DFO/industry northern shrimp surveys collected between 2006 and 2014. For each taxonomic group in each region, both presence-absence random forest models using data collected across gear types (Alfredo, Campelen, and Cosmos trawls), and biomass random forest models using data collected within gear types were run. Most presence-absence models had good predictive capacity with cross-validated Area Under the Receiver Operating Characteristic Curve (AUC) values ranging from 0.643 to 0.894. The lower AUC was produced from the Hudson Strait sponge model, which also had poor sensitivity and specificity relative to the models performed in the Eastern Arctic Biogeographic Zone. The random forest biomass models performed inconsistently within taxa by gear type, with the models for sponges using data from Alfredo and Campelen trawl surveys perfoming best (R2 = 0.327 and 0.480 respectively). Generalized additive models (GAMs) were developed to predict the biomass distribution of each taxonomic group and serve as a comparison to the RF models. Aside from providing continuous prediction maps of significant benthic taxa for these regions, our results will be useful in ecosystem management decision-making processes. In particular, good SDM models could be used to refine the outer boundaries of significant concentrations of these organisms identified by kernel density analyses and identify new suitable habitat not sampled by the trawl surveys in areas of extrapolation.
DOI: 10.6084/m9.figshare.15111765.v1
title: Sequencing and assembly metrics

description: Summary of ONT sequencing and <i>de novo</i> assembly of EnvD and EnvH isolates. The number of reads, mean length reads and coverage were obtained by the Guppy v 4.4.2 basecaller. <i>De novo</i> assembly was conducted by Flye.
DOI: 10.6084/m9.figshare.23500695.v1
title: Centrifuge test results (shallow foundation test)

description: Centrifuge test results in KAIST
DOI: 10.17632/hcf893cr2n
title: BROADCAST: A high-order compressible CFD toolbox for stability and sensitivity using Algorithmic Differentiation

description: The evolution of any complex dynamical system is described by its state derivative operators. However, the extraction of the exact N-order state derivative operators is often inaccurate and requires approximations. The open-source CFD (Computational Fluid Dynamics) code called BROADCAST discretises the compressible Navier-Stokes equations and then extracts the linearised N-derivative operators through Algorithmic Differentiation (AD) providing a toolbox for laminar flow dynamics. Furthermore, the gradients through adjoint derivation are extracted either by transposition of the linearised operator or through the backward mode of the AD tool. The software includes base-flow computation and linear global stability analysis via eigen-decomposition of the linearised operator or via singular value decomposition of the resolvent operator. Sensitivity tools as well as weakly nonlinear analysis complete the package. The numerical method for the spatial discretisation of the equations consists of a finite-difference high-order shock-capturing scheme applied within a finite volume framework on 2D curvilinear structured grids. The stability and sensitivity tools are demonstrated on two cases: a cylinder flow at low Mach number and a hypersonic boundary layer.
DOI: 10.17632/nt4dv35fns
title: An Optimized Message Routing Approach inspired by the Landlord’s game in Disruption-tolerant Networks

description: we propose a method to forward messages inspired by the Landlord’s game in such a way that leads to more collaboration between selfish nodes. In our proposed method, each node joins one of the coalitions. In each coalition, the sender and receiver nodes play the role of landlord and worker, respectively. Both landlord and worker, upon relaying a message, receive reputation. In this way, both parties have a motivation to participate in forwarding operations. The simulation of the proposed algorithm was done using the ONE simulator.
DOI: 10.17632/xhz9d9grkw
title: Comprehensive Dataset for the Development and Validation of a Recombinase Aided Amplification (RAA) Method

description: This dataset contains the optimization data for primer concentration and reaction conditions of the Recombinase Aided Amplification (RAA) method, as well as the specificity and sensitivity detection data. Additionally, it includes detection data from clinical testing using both the RAA method and the Reverse Transcription Polymerase Chain Reaction (RT-PCR) method.
The dataset comprises the following:
1.Optimization Data:
Primer concentration and reaction conditions for the RAA method were optimized to achieve the most efficient amplification results.
Photographs of the results from the colloidal gold immunochromatographic test strips are provided.
2.Specificity and Sensitivity Data:
The specificity of the RAA method was tested against Feline Calicivirus, Feline Panleukopenia Virus, and Feline Herpesvirus Type 1 to ensure that the assay only detects the target pathogen.
Sensitivity was determined by the lowest concentration of the target analyte that could be reliably detected.
Photographs of the results from
DOI: 10.6084/m9.figshare.14880393.v1
title: Health problems.dta

description: A cross sectional survey was carried out to evaluate the relationship between subsector departments and goldminers’ likelihood of experiencing occupational related health problems while controlling for compositional, contextual and working conditions
DOI: 10.6084/m9.figshare.26400400.v5
title: Automatic imitation of intransitive actions in macaws- Datasets

description: Automatic imitation of intransitive actions in macaws
DOI: 10.6084/m9.figshare.3123175.v6
title: Information, Time and the Human Mind

description: Quantum approaches to consciousness seem to explain several but not all observations in the field of mind-brain interaction. Information is introduced as a key to a wider world view since we have – according to Thomas Nagel –<i> to transcend the built-in limits of contemporary scientific orthodoxy </i>before we may <i>understand mind</i>. In the macroscopic world information is limited in contrast to the capability of our mind to work with unlimited information in mathematics. The world of mathematical concepts with unlimited information is independent of time and space and the mind is an intermediary between the macroscopic and the mathematical world. In the macroscopic world time is unidirectional while for the mind as well as in quantum physics time is bidirectional. In a given experimental system a photon carries 1 bit of information. Using a double slit gedankenexperiment it is shown that the transmission of the information from the photon to the detector takes the time span delta t = λ/c and Planck’s formula for the energy of the photon can be interpreted as Planck’s constant h multiplied by the elementary information flux (1bit) c/λ. The time span was determined by an observer in the macroscopic world. For the photon, however, time does not flow and space is shrunk to zero. For the discussion of time in quantum physical measurements these two viewpoints have to be distinguished. We may describe the photon as the elementary information unit in a world independent of time and space. The world of the photon is evidence for the existence of the world of mathematical concepts which is independent of time and space. When the information is transmitted from the world of the photon to the world of the detector it is absorbed and the loss of 1 bit information causes an increase of energy in the system. For complex information the hypothesis of an extended energy conservation law is formulated. An experimental test of the hypothetical equivalence of energy and information flux is necessary as a next step on the way which could lead to a better understanding of consciousness as well as to a quantitative theory of information.
DOI: 10.6084/m9.figshare.23560812.v1
title: RNAseq analyses of p53 WT and p53 cKD hippocampi

description: Data were obtained from hippocampi of male and female, <em>p53f/+-Emx1-Cre+</em> (p53 cKD) and <em>p53f/+-Emx1-Cre-</em> (p53 WT) mice, 5 each at postnatal day 14.
DOI: 10.6084/m9.figshare.28226426.v1
title: Data Set.xls

description: This study examines the effects of a WeChat-based telecollaboration involving Chinese EFL students and Irish college students, aiming to determine the feasibility of using telecollaboration to enhance Chinese EFL students’intercultural competence. A mixed-methods research design was employed, combining quantitative and qualitative data. Quantitative data were collected using an adapted questionnaire, which was analyzed through paired-sample t-tests to measure changes in intercultural competence. Additionally, participants’satisfaction with the telecollaborative project was evaluated using another adapted questionnaire, analyzed descriptively. Qualitative data from reflective journals and semi-structured interviews underwent thematic analysis, enriching the quantitative findings through triangulation. Results indicated significant improvements in the intercultural competence of Chinese EFL students, alongside a high level of satisfaction with the telecollaborative experience. This study contributes to the limited literature on telecollaboration’s role in fostering intercultural competence in the Chinese context and offers practical insights for EFL educators seeking to enhance their students’intercultural competence.
DOI: 10.6084/m9.figshare.8987033.v1
title: EARLY DETECTION OF POOR ADHERENCE TO TREATMENT OF PEDIATRIC RHEUMATIC DISEASES: PEDIATRIC RHEUMATOLOGY ADHERENCE QUESTIONNAIRE - A PILOT STUDY

description: ABSTRACT Objective: To develop a questionnaire that allows the early detection of patients at risk for poor adherence to medical and non-medical treatment in children and adolescents with chronic rheumatic diseases. Methods: The Pediatric Rheumatology Adherence Questionnaire (PRAQ) was applied in recently diagnosed patients within a period of one to four months after confirmation of the rheumatic disease. After six months, the patients’ adherence to the medical and non-medical treatment was assessed. An internal consistency analysis was conducted to eliminate redundant questions in the PRAQ. Results: A total of 33 patients were included in the pilot study. Six months after the PRAQ had been applied, poor global adherence was observed in seven (21.2%) patients and poor adherence to medical treatment in eight (24.2%) patients. No correlation was observed between the PRAQ scores and the percentages of adherence, as well as the stratification for each index, except for a tendency to a correlation between socioeconomic index and poor adherence to medical treatment (p=0.08). A new PRAQ questionnaire with 25 of the 46 original questions was generated as a result of the reliability analysis. Conclusions: The usefulness of this questionnaire in clinical practice should be still evaluated. Due to the importance of a tool for the early detection of rheumatic patients at risk of poor adherence to treatment, the new PRAQ questionnaire should be reviewed and applied in a larger study to better define its validity and reliability.
DOI: 10.6084/m9.figshare.9784361.v1
title: China national energy inventory, 2016-2017

description: The dataset provides China national energy inventory from 2016-2017.Raw data are collect from China energy statistical yearbooks 2017-2018.
DOI: 10.17632/v2dmnhps53
title: Base de datos de papeles relacionados con Extractos Botánicos de plantas del Neotrópico-Database of papers related to Botanical Extracts of Neotropical Plants

description: Esta data fue preparado por Paulina Antonia Cuvi Sagñay con asesoria de Hugo Cerda, Carlos Carpio y A. Carolina Ledezma para realizar el trabajo de investigacion / Titulacion como Ingeniera Quimica de Paulina Antonia Cuvi Sagñay: Titulado “Meta-Análisis sobre el Conocimiento Científico publicado acerca de Procesos de Extracción y Formulación de Bioinsecticidas Provenientes de Plantas del Neotropicales” This data was prepared by Paulina Antonia Cuvi Sagñay with advice from Hugo Cerda, Carlos Carpio and A. Carolina Ledezma to carry out the research work / Titration as Chemical Engineer of Paulina Antonia Cuvi Sagñay: Entitled "Meta-Analysis on Scientific Knowledge published about of Processes of Extraction and Formulation of Bioinsecticides from Neotropical Plants "
DOI: 10.6084/m9.figshare.1418061.v1
title: DATA : Abies data

description: BlastX and functional annotation (sheet 1), SNPs design (sheet 2) and SNPs Genotyping* (sheet 3). *<em>Abies alba</em> and<em> A. cephalonica</em> populations (10 altitudinal gradients accross Europe from French Pyrennées to Greece) / 273 SNPs
DOI: 10.6084/m9.figshare.19101660.v1
title: Additional file 2 of The burden of household out-of-pocket healthcare expenditures in Ethiopia: a systematic review and meta-analysis

description: Additional file 2. Data extraction summary table or abstraction format. The table was used to present the ways of data collection (study characteristics and outcome measures) in Microsoft excel format. It also contains raw data for outcome analyses.
DOI: 10.6084/m9.figshare.25962187.v2
title: Orchard Oriole Songs, Syllable Library, and Categorization

description: Library of Orchard Oriole songs and syllable types, categorized by Moreland et al. (in prep). Categorized from 3 songs each from 30 males and 15 females Orchard Orioles. For recording methods, see Moyer et al. 2022.Sheet 1 shows the syllable library, with a spectrogram showing the first usage of each syllable type. Sheet 2 shows the assigned categorization for each individual Orchard Oriole song and calculations of syllable variability within song and within individual.
DOI: 10.6084/m9.figshare.28701185.v1
title: Metal soil concentrations, plant yield, plant metal concentrations and cannabinoid concentrations in flowers

description: Metal and cannabinoid concentrations in hemp grown on soil contaminated with Pb, Cd and Zn
DOI: 10.6084/m9.figshare.6804017.v1
title: Supplementary Material for: Multicenter Experience with Stenting for Symptomatic Carotid Web

description: <b><i>Background:</i></b> A carotid web (CaW) is a shelf-like lesion in the posterior aspect of the internal carotid bulb and represents an intimal variant of fibromuscular dysplasia. CaW has been associated with recurrent strokes and conventionally treated with surgical excision. We report a multicenter experience of stenting in patients with symptomatic CaWs. <b><i>Methods:</i></b> Retrospective review of consecutive patients admitted to 5 comprehensive stroke centers who were identified to have a symptomatic CaW and treated with carotid stenting. A symptomatic CaW was defined by the presence of a shelf-like/linear, smooth filling defect in the posterior aspect of the carotid bulb diagnosed by neck CT angiography (CTA) and confirmed with conventional angiography in patients with negative stroke workup. <b><i>Results:</i></b> Twenty-four patients with stented symptomatic CaW were identified (stroke in 83% and transient ischemic attack in 17%). Their median age was 47 years (IQR 41–61), 14 (58%) were female, and were 17 (71%) black. The degree of stenosis by NASCET was 0% (range 0–11). All patients were placed on dual antiplatelets and stented at a median of 9 days (IQR 4–35) after the last event. Closed-cell stents were used in 18 (75%) of the cases. No periprocedural events occurred with the exception of 2 cases of asymptomatic hypotension/bradycardia. Clinical follow-up after stent placement occurred for a median of 12 months (IQR 3–19) with no new cerebrovascular events noted. Functional independence at 90 days was achieved in 22 (91%) patients. Follow-up vascular imaging (ultrasound <i>n</i> = 18/CTA <i>n</i> = 5) was performed at a median of 10 months (IQR 3–18) and revealed no stenosis. <b><i>Conclusions:</i></b> Stenting for symptomatic CaW appears to be a safe and effective alternative to surgical resection. Further studies are warranted.
DOI: 10.6084/m9.figshare.10264805.v1
title: Raw Data: Production and characteristics of fish protein hydrolysate from parrotfish (Chlorurus sordidus) head

description: The data for Production and characteristics of fish protein hydrolysate from parrotfish (Chlorurus sordidus) head
DOI: 10.6084/m9.figshare.22014803.v1
title: economic resilience

description: This data contains indicators that make up the economic resilience variable
DOI: 10.6084/m9.figshare.22344358.v1
title: NACA 0012 Tail Properties

description: This data was used to model the tail for the gust alleviation gapped wing study.
DOI: 10.6084/m9.figshare.12456716.v1
title: traffic_volume_hours.csv

description: This data compares hourly traffic volume at 241 inbound of outbound count locations in 2019 with those in 2020 for corresponding day of week.