cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fqqbyj
title: Occurrence Download

description: A dataset containing 21229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium cepa"
 ]
}

 The dataset includes 21229 records from 477 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015451-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnagtf
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiasmocleis magnova"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015453-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckwus4
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picea asperata",
 "Year 1970-2023"
 ]
}

 The dataset includes 97 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015454-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17540001
title: Seascape genomics uncovers contrasting population genetic structures in reef corals

description: Understanding how abiotic conditions shape biodiversity and population connectivity is essential for predicting climate change impacts and guiding conservation efforts. Coral reefs face severe losses, making effective conservation strategies increasingly urgent. Here, we use a seascape genomics approach to examine the population genetic structure of three non-model scleractinian corals around the Arabian Peninsula, an overlooked region with peculiar oceanographic features. Our results reveal contrasting patterns of genetic structure across species, which we further integrate with geographic distances, larval dispersal models, and environmental data. We show that population structure is shaped both by isolation by distance (IBD) and isolation by resistance (IBR), with environmental gradients often covarying with spatial separation. Our findings offer new insights into coral diversification and evolutionary dynamics facing the unique conditions around the Arabian Peninsula. This work also provides a transferable methodological framework to advance our understanding of processes structuring reef populations, thereby informing efforts to design robust marine protected area networks in the face of global climate change and biodiversity loss.

 

This deposit contains the command lines, scripts, and analysis files related to Oury et al. Seascape genomics uncovers contrasting population genetic structures in reef corals.
DOI: 10.5281/zenodo.15340482
title: Seascape genomics uncovers contrasting population genetic structures in reef corals

description: Understanding how abiotic conditions shape biodiversity and population connectivity is essential for predicting climate change impacts and guiding conservation efforts. Coral reefs face severe losses, making effective conservation strategies increasingly urgent. Here, we use a seascape genomics approach to examine the population genetic structure of three non-model scleractinian corals around the Arabian Peninsula, an overlooked region with peculiar oceanographic features. Our results reveal contrasting patterns of genetic structure across species, which we further integrate with geographic distances, larval dispersal models, and environmental data. We show that population structure is shaped both by isolation by distance (IBD) and isolation by resistance (IBR), with environmental gradients often covarying with spatial separation. Our findings offer new insights into coral diversification and evolutionary dynamics facing the unique conditions around the Arabian Peninsula. This work also provides a transferable methodological framework to advance our understanding of processes structuring reef populations, thereby informing efforts to design robust marine protected area networks in the face of global climate change and biodiversity loss.

 

This deposit contains the command lines, scripts, and analysis files related to Oury et al. Seascape genomics uncovers contrasting population genetic structures in reef corals.
DOI: 10.15468/dl.be5pkr
title: Occurrence Download

description: A dataset containing 1551111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ixobrychus exilis, Junco hyemalis)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1551111 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gkjbh
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ginkgo biloba",
 "Year 1970-2023"
 ]
}

 The dataset includes 137 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015455-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17761774
title: Complete dataset of the 30 E. coli genomes analyzed in this study. This file includes the NCBI accession numbers, sequence types (ST), serotypes, Clermont phylogroups, CH types, and summary data for virulence factors and antimicrobial resistance genes.
DOI: 10.5281/zenodo.17761775
title: Complete dataset of the 30 E. coli genomes analyzed in this study. This file includes the NCBI accession numbers, sequence types (ST), serotypes, Clermont phylogroups, CH types, and summary data for virulence factors and antimicrobial resistance genes.
DOI: 10.15468/dl.jzakc7
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cornufer myersi"
 ]
}

 The dataset includes 136 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015456-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kudzmf
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hynobius stejnegeri"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015458-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9r8p6g
title: Occurrence Download

description: A dataset containing 938231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cirsium vulgare",
 "HasCoordinate is true"
 ]
}

 The dataset includes 938231 records from 3515 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015438-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mebd4t
title: Occurrence Download

description: A dataset containing 29838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is La colección briológica del Herbario Nacional (MEXU). Actualización 2000"
 ]
}

 The dataset includes 29838 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0316340-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nge6ht
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aralia merrillii C.B.Shang"
 ]
}

 The dataset includes 70 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013660-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3upw8c
title: Occurrence Download

description: A dataset containing 222740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 10.709602690897",
 "DecimalLongitude is less than 10.7126622440814",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 222740 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010566-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zq0ow
title: Occurrence Download

description: A dataset containing 3705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artibeus intermedius Allen, 1897"
 ]
}

 The dataset includes 3705 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006179-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yywqq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eptesicus andinus J.A.Allen, 1914",
 "Country is Colombia"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006179-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktqwe9
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abutilon theophrasti Medik., Acacia decurrens Willd., Acacia mangium Willd., Acacia monga De Wild., Acanthospermum hispidum DC., Acer negundo L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 242 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294363-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rdd3u
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium dshungaricum Vved."
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002854-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3wzew
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myleus pacu (Jardine, 1841)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 58 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006179-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq424v
title: Occurrence Download

description: A dataset containing 187779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is IND.17.5_1",
 "Geometry POLYGON((74.31692354582108 8.753753204672435,78.31692354582108 8.753753204672435,78.31692354582108 12.753753204672435,74.31692354582108 12.753753204672435,74.31692354582108 8.753753204672435))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 187779 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037075-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqauc9
title: Occurrence Download

description: A dataset containing 1027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 12.0343892197399",
 "DecimalLongitude is less than 12.0374487729243",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1027 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013641-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcuhvm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echeveria elegans (Rose) A.Berger",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0316353-200613084148143/datasets/export for details.
DOI: 10.15468/dl.cfr2xq
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus selachiana L.A.S.Johnson & K.D.Hill"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161932-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ony8wd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salamandra guttolineata Holbrook, 1838"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006179-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czg4ft
title: Occurrence Download

description: A dataset containing 18491 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.241862535476685 43.294803095683314,5.241862535476685 43.25493380778211,5.340739488601685 43.25493380778211,5.340739488601685 43.294803095683314,5.241862535476685 43.294803095683314)))"
 ]
}

 The dataset includes 18491 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034670-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eg74tv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Millettia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013655-240229165702484/datasets/export for details.
DOI: 10.15468/dl.3z9ktk
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaertnera divaricata (Thwaites) Thwaites"
 ]
}

 The dataset includes 47 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000651-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etn212
title: Occurrence Download

description: A dataset containing 379039 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur L."
 ]
}

 The dataset includes 379039 records from 764 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006180-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfyjx9
title: Occurrence Download

description: A dataset containing 6358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is MEXU/Colección de Briofitas",
 "Geometry POLYGON((-118 14,-86 14,-86 32,-118 32,-118 14))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pottiaceae"
 ]
}

 The dataset includes 6358 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039088-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c43iut
title: Occurrence Download

description: A dataset containing 3649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxyura jamaicensis (J.F.Gmelin, 1789)",
 "Country is Mexico"
 ]
}

 The dataset includes 3649 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006180-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygpfyh
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argomuellera basicordata Peter ex Radcl.-Sm."
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013648-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2x5dw
title: Occurrence Download

description: A dataset containing 650 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insectivorous Bats of Gunung Mulu National Park, Malaysia"
 ]
}

 The dataset includes 650 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161933-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mz7vw
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium dumebuchum H.J.Choi"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002863-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thx0i7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis amphimelas (Hilgendorf, 1905)",
 "Geometry POLYGON((35.39 -3.72,35.39 -3.34,35.99 -3.34,35.99 -3.72,35.39 -3.72))",
 "HasGeospatialIssue is false",
 "Year 1920-2020"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006180-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.df9z6t
title: Occurrence Download

description: A dataset containing 4225599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is April",
 "Year 2015-2021"
 ]
}

 The dataset includes 4225599 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310725-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3au7mr
title: Occurrence Download

description: A dataset containing 19770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eptesicus fuscus (Palisot de Beauvois, 1796)"
 ]
}

 The dataset includes 19770 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006180-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxdxnk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe cannellii L.C.Leach"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002849-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs2www
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.32861 23.95679,112.80322 23.4646,113.34815 23.37671,114.20947 23.16577,116.47705 23.35913,117.8877 24.4292,119.13135 25.80249,120.1333 27.2439,120.44971 29.68726,119.46533 32.23608,117.18018 32.85132,115.36963 32.85132,113.96338 32.71069,112.06494 32.11304,111.01025 28.89624,111.23877 26.61108,111.2915 25.64429,112.32861 23.95679))",
 "TaxonKey is Anas formosa Georgi, 1775"
 ]
}

 The dataset includes 58 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034687-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ijsbok
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 3) Cell number of the main taxonomic groups of phytoplankton and their percentage in total number of phytoplankton in the water column in the northern subtropical Pacific"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006180-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.