cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2gy2ky3yx8
title: Miniaturized ASTRAS360 Rotary Encoder Raw Image Dataset

description: The Miniaturized ASTRAS360 is an absolute single-turn rotary encoder that captures data using an image sensor (stator). The encoder rotor is composed by a set of unique colored mirrors that can rotate with a single rotational degree of freedom around the image sensor. These mirrors reflect the light emitted by an LED into the image sensor passing through a slit mask place on top of it. By analyzing the color and position of the resulting light stripe, it is possible to reconstruct the angular rotation of the mirrors that generated each unique image.
To calibrate and evaluate the performance of the rotary encoder, a calibration setup was employed, which included a motorized rotational stage with an integrated rotary encoder.

Dataset Composition: 
The dataset consists of 10 bits raw grayscale images in .pgm format, collected under various conditions. The RGB Bayer filter pattern on the Naneye2D image sensor follows this configuration: 
Pixel (row=1, column=1) = G, Pixel (1,2) = R, Pixel (2,1) = B, and Pixel (2,2) = G.
The dataset is organized into four distinct sets. 
The first two are training sets acquired at fixed incremental angular steps: one for clockwise rotation (Train_Clockwise) and the other for counterclockwise rotation (Train_CounterClockwise). These sets are intended for calibrating the rotary encoder. 
The testing dataset (Test_Inference) contains images captured using randomized rotational steps and directions, designed to assess the performance of the rotary encoder.
The precision estimation dataset (Test_Precision) includes images taken at 24 equispaced angular positions, with each position containing 1000 images, aimed at estimating the precision of the rotary encoder.

File Naming Convention: 
Each image file name follows this format: 
“__Angle__time_.pgm” 
(E.g. “3189_1_Angle_-84.32949_time_2062301894.pgm”)

The Index (e.g., 3189) represents the unique identifier for the angular position, while the ImageIndex (e.g., 1) indicates the index of the image taken at that specific angular position. The AngularValue (e.g., -84.32949) represents the angular rotation of the rotary encoder, as recorded by the motorized rotational stage, serving as the ground truth. It is reported in degree (°). The Timestamp (e.g., 2062301894) is a simple counter that starts at the beginning of every acquisition, reported in microseconds.
DOI: 10.17632/2gy2ky3yx8.1
title: Miniaturized ASTRAS360 Rotary Encoder Raw Image Dataset

description: The Miniaturized ASTRAS360 is an absolute single-turn rotary encoder that captures data using an image sensor (stator). The encoder rotor is composed by a set of unique colored mirrors that can rotate with a single rotational degree of freedom around the image sensor. These mirrors reflect the light emitted by an LED into the image sensor passing through a slit mask place on top of it. By analyzing the color and position of the resulting light stripe, it is possible to reconstruct the angular rotation of the mirrors that generated each unique image.
To calibrate and evaluate the performance of the rotary encoder, a calibration setup was employed, which included a motorized rotational stage with an integrated rotary encoder.

Dataset Composition: 
The dataset consists of 10 bits raw grayscale images in .pgm format, collected under various conditions. The RGB Bayer filter pattern on the Naneye2D image sensor follows this configuration: 
Pixel (row=1, column=1) = G, Pixel (1,2) = R, Pixel (2,1) = B, and Pixel (2,2) = G.
The dataset is organized into four distinct sets. 
The first two are training sets acquired at fixed incremental angular steps: one for clockwise rotation (Train_Clockwise) and the other for counterclockwise rotation (Train_CounterClockwise). These sets are intended for calibrating the rotary encoder. 
The testing dataset (Test_Inference) contains images captured using randomized rotational steps and directions, designed to assess the performance of the rotary encoder.
The precision estimation dataset (Test_Precision) includes images taken at 24 equispaced angular positions, with each position containing 1000 images, aimed at estimating the precision of the rotary encoder.

File Naming Convention: 
Each image file name follows this format: 
“__Angle__time_.pgm” 
(E.g. “3189_1_Angle_-84.32949_time_2062301894.pgm”)

The Index (e.g., 3189) represents the unique identifier for the angular position, while the ImageIndex (e.g., 1) indicates the index of the image taken at that specific angular position. The AngularValue (e.g., -84.32949) represents the angular rotation of the rotary encoder, as recorded by the motorized rotational stage, serving as the ground truth. It is reported in degree (°). The Timestamp (e.g., 2062301894) is a simple counter that starts at the beginning of every acquisition, reported in microseconds.
DOI: 10.15468/dl.emgaxj
title: Occurrence Download

description: A dataset containing 677350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycaenidae",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 677350 records from 1082 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070078-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2t2vvrcm6g.1
title: Syngnathus typhle (broad nosed pipefish) gut and sex-specific microbiota

description: Data for manuscript: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish.
This data set contains 16s rRNA sequencing data and additional information (metadata) for experiments 1 and 2.
_________________
Microbes are acquired through vertical and environmental horizontal transmission. Vertical transmission is directly linked to reproductive success and entails early transmission, facilitating coexistence of host and microbes over generations. The multiple potentially interacting routes of vertical transmission are challenging to be disentangled in conventional sex-role species, as they are mostly intermingled on the maternal side, i.e., through egg production, pregnancy, birth and postnatal care. The evolution of male pregnancy in syngnathids (pipefishes and seahorses) offers an opportunity to separate vertical microbial provisioning through the egg (maternal) from provisioning through pregnancy (paternal). We experimentally evaluated the existence and role of paternal microbiota provisioning through male pregnancy on offspring development and microbial colonization. Male pipefish were exposed to antibiotics, and subsequently recolonized with bacteria of paternal, maternal, and environmental origin (spike treatment). After pregnancy, the microbiota (16s rRNA, V3-V4) of developing offspring was repeatedly ribotyped. Paternal antibiotic and spike treatments influenced the microbial composition of the brood pouch and offspring microbiome development. Paternal spike treatment shortened pregnancy duration and enhanced offspring survival, suggesting a beneficial early-life effect. Expanding on how distinct vertical microbial transmission routes shape the offspring microbiome will foster our understanding of holobiont function in health and disease.
DOI: 10.17632/d295x97ds3
title: Syngnathus typhle (broad nosed pipefish) sex-specific and juvenile microbiota

description: Data for manuscript: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish.
This data set contains 16s rRNA sequencing data and additional information (metadata) for experiment 3.
_________________
Microbes are acquired through vertical and environmental horizontal transmission. Vertical transmission is directly linked to reproductive success and entails early transmission, facilitating coexistence of host and microbes over generations. The multiple potentially interacting routes of vertical transmission are challenging to be disentangled in conventional sex-role species, as they are mostly intermingled on the maternal side, i.e., through egg production, pregnancy, birth and postnatal care. The evolution of male pregnancy in syngnathids (pipefishes and seahorses) offers an opportunity to separate vertical microbial provisioning through the egg (maternal) from provisioning through pregnancy (paternal). We experimentally evaluated the existence and role of paternal microbiota provisioning through male pregnancy on offspring development and microbial colonization. Male pipefish were exposed to antibiotics, and subsequently recolonized with bacteria of paternal, maternal, and environmental origin (spike treatment). After pregnancy, the microbiota (16s rRNA, V3-V4) of developing offspring was repeatedly ribotyped. Paternal antibiotic and spike treatments influenced the microbial composition of the brood pouch and offspring microbiome development. Paternal spike treatment shortened pregnancy duration and enhanced offspring survival, suggesting a beneficial early-life effect. Expanding on how distinct vertical microbial transmission routes shape the offspring microbiome will foster our understanding of holobiont function in health and disease.
DOI: 10.17632/2t2vvrcm6g
title: Syngnathus typhle (broad nosed pipefish) gut and sex-specific microbiota

description: Data for manuscript: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish.
This data set contains 16s rRNA sequencing data and additional information (metadata) for experiments 1 and 2.
_________________
Microbes are acquired through vertical and environmental horizontal transmission. Vertical transmission is directly linked to reproductive success and entails early transmission, facilitating coexistence of host and microbes over generations. The multiple potentially interacting routes of vertical transmission are challenging to be disentangled in conventional sex-role species, as they are mostly intermingled on the maternal side, i.e., through egg production, pregnancy, birth and postnatal care. The evolution of male pregnancy in syngnathids (pipefishes and seahorses) offers an opportunity to separate vertical microbial provisioning through the egg (maternal) from provisioning through pregnancy (paternal). We experimentally evaluated the existence and role of paternal microbiota provisioning through male pregnancy on offspring development and microbial colonization. Male pipefish were exposed to antibiotics, and subsequently recolonized with bacteria of paternal, maternal, and environmental origin (spike treatment). After pregnancy, the microbiota (16s rRNA, V3-V4) of developing offspring was repeatedly ribotyped. Paternal antibiotic and spike treatments influenced the microbial composition of the brood pouch and offspring microbiome development. Paternal spike treatment shortened pregnancy duration and enhanced offspring survival, suggesting a beneficial early-life effect. Expanding on how distinct vertical microbial transmission routes shape the offspring microbiome will foster our understanding of holobiont function in health and disease.
DOI: 10.17632/d295x97ds3.1
title: Syngnathus typhle (broad nosed pipefish) sex-specific and juvenile microbiota

description: Data for manuscript: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish.
This data set contains 16s rRNA sequencing data and additional information (metadata) for experiment 3.
_________________
Microbes are acquired through vertical and environmental horizontal transmission. Vertical transmission is directly linked to reproductive success and entails early transmission, facilitating coexistence of host and microbes over generations. The multiple potentially interacting routes of vertical transmission are challenging to be disentangled in conventional sex-role species, as they are mostly intermingled on the maternal side, i.e., through egg production, pregnancy, birth and postnatal care. The evolution of male pregnancy in syngnathids (pipefishes and seahorses) offers an opportunity to separate vertical microbial provisioning through the egg (maternal) from provisioning through pregnancy (paternal). We experimentally evaluated the existence and role of paternal microbiota provisioning through male pregnancy on offspring development and microbial colonization. Male pipefish were exposed to antibiotics, and subsequently recolonized with bacteria of paternal, maternal, and environmental origin (spike treatment). After pregnancy, the microbiota (16s rRNA, V3-V4) of developing offspring was repeatedly ribotyped. Paternal antibiotic and spike treatments influenced the microbial composition of the brood pouch and offspring microbiome development. Paternal spike treatment shortened pregnancy duration and enhanced offspring survival, suggesting a beneficial early-life effect. Expanding on how distinct vertical microbial transmission routes shape the offspring microbiome will foster our understanding of holobiont function in health and disease.
DOI: 10.17632/2t2vvrcm6g.3
title: Syngnathus typhle (broad nosed pipefish) gut and sex-specific microbiota

description: Data for manuscript: Paternal microbiota manipulation influences offspring microbial colonization and development in a sex role-reversed pipefish.
This data set contains 16s rRNA sequencing data and additional information (metadata) for experiments 1 and 2.
_________________
Microbes are acquired through vertical and environmental horizontal transmission. Vertical transmission is directly linked to reproductive success and entails early transmission, facilitating coexistence of host and microbes over generations. The multiple potentially interacting routes of vertical transmission are challenging to be disentangled in conventional sex-role species, as they are mostly intermingled on the maternal side, i.e., through egg production, pregnancy, birth and postnatal care. The evolution of male pregnancy in syngnathids (pipefishes and seahorses) offers an opportunity to separate vertical microbial provisioning through the egg (maternal) from provisioning through pregnancy (paternal). We experimentally evaluated the existence and role of paternal microbiota provisioning through male pregnancy on offspring development and microbial colonization. Male pipefish were exposed to antibiotics, and subsequently recolonized with bacteria of paternal, maternal, and environmental origin (spike treatment). After pregnancy, the microbiota (16s rRNA, V3-V4) of developing offspring was repeatedly ribotyped. Paternal antibiotic and spike treatments influenced the microbial composition of the brood pouch and offspring microbiome development. Paternal spike treatment shortened pregnancy duration and enhanced offspring survival, suggesting a beneficial early-life effect. Expanding on how distinct vertical microbial transmission routes shape the offspring microbiome will foster our understanding of holobiont function in health and disease.
DOI: 10.15468/rwt3x2
title: Occurrence data for two CITES Appendix II species in Côte d'Ivoire

description: This dataset concerns the distribution of two species Pericopsis elata and Pterocarpus erinaceus in Côte d'Ivoire which trade must be effectively regulated and controlled.
DOI: 10.17632/8b65hpbsmy
title: Data Files for Optimizing Anodization Processing Parameters for Improved Properties of Nanostructured Oxide Surfaces on Magnesium Alloys for Antimicrobial Implants

description: Original Data for Optimizing Anodization Processing Parameters for Improved Properties of Nanostructured Oxide Surfaces on Magnesium Alloys for Antimicrobial Implants
DOI: 10.17632/8b65hpbsmy.1
title: Data Files for Optimizing Anodization Processing Parameters for Improved Properties of Nanostructured Oxide Surfaces on Magnesium Alloys for Antimicrobial Implants

description: Original Data for Optimizing Anodization Processing Parameters for Improved Properties of Nanostructured Oxide Surfaces on Magnesium Alloys for Antimicrobial Implants
DOI: 10.17632/tghb7ktmh7
title: Acute high salt diet on male and female wistar rats

description: Data obtained from an acute high salt diet (8%NaCl) protocol on young adults male and female wistar rats during 7 days. The data includes observations on food and water intake, initial weight and weight gain. Data also includes spontaneous locomotor activity tests and a social preference test. Serum levels of urea, creatinine, sodium and proteins were also measured along with kidney TBARS levels. The levels of glucocorticoid receptor from hypothalamus was also investigated.
DOI: 10.17632/tghb7ktmh7.1
title: Acute high salt diet on male and female wistar rats

description: Data obtained from an acute high salt diet (8%NaCl) protocol on young adults male and female wistar rats during 7 days. The data includes observations on food and water intake, initial weight and weight gain. Data also includes spontaneous locomotor activity tests and a social preference test. Serum levels of urea, creatinine, sodium and proteins were also measured along with kidney TBARS levels. The levels of glucocorticoid receptor from hypothalamus was also investigated.
DOI: 10.17632/2kykp238bk
title: JME

description: In this study, it is proposed to model a JFET-based memristive emulator excited using single phase PWM inverter in Simulink
DOI: 10.17632/2kykp238bk.1
title: JME

description: In this study, it is proposed to model a JFET-based memristive emulator excited using single phase PWM inverter in Simulink
DOI: 10.17632/v6xhvhmwc3
title: Three−dimensional carbon foam

description: Electrocatalytic performance
DOI: 10.17632/v6xhvhmwc3.1
title: Three−dimensional carbon foam

description: Electrocatalytic performance
DOI: 10.5281/zenodo.15421004
title: Calcium carbonate content conversion methods using elemental and core logging data for Cenozoic sediments recovered by scientific drilling

description: This dataset contains carbonate wt% estimations and related geochemical / geophysical measurements for core samples from 116 Cenozoic ODP/IODP sites. The data were generated to evaluate conversion methods between calcium carbonate content and elemental/core-logging proxies.
DOI: 10.5281/zenodo.10911850
title: Traversing European Coastlines (TREC) particle count and meterological data from land (Mar - Nov 2023)

description: Dataset contains continuous particle counts from GRIMM EDM264 Pro particle counter with an attached meterological station that were collected from land during the first year of the TREC expedition (2023). Date includes date, time, particle counts from PM1 to PM10 or size fraction from 0.25 µm to 35 µm. Contextual environmental variables include, temp., relative humiditiy, precipitation, Pressure, Wind velocity and direction.
DOI: 10.5281/zenodo.17460786
title: LLRetina: low-light color fundus image dataset

description: The LLRetina dataset comprises paired low-light (LL) and high-light (HL) color fundus images. Based on flash irradiance during imaging, the dataset is divided into two subsets: LLRetina_LL1 and LLRetina_LL2. LLRetina_LL1 includes both healthy and diseased eyes,  while LLRetina_LL2 includes only healthy eyes.

For LLRetina_LL1, we adopted a feature point-based image registration algorithm to estimate transformation matrices and spatially align each LL image with its corresponding HL image. The ratio between the intersection area of the unmasked regions post-registration and the unmasked area of the original low-light image is computed and pairs with a ratio below 0.9 were excluded. Additional manual inspections were performed to remove registration artifacts and regenerate the associated masks. Ultimately, a total of 630 well-registered low-light and high-light image pairs were retained. For deep learning applications, the dataset was divided into training, validation, and testing subsets in a ratio of 8:1:1, resulting in 508, 61, and 61 image pairs in each split, respectively. In addition, some captured images exhibited minor quality issues, including defocus blur, peripheral darkness, or localized overexposure. These defects are particularly problematic for supervised learning, as low-quality ground truths can lead to incorrect modeling of illumination and noise characteristics. To mitigate this, we performed patch-level quality assessment on the high-light images in the training set using a sliding window approach. Patches affected by local degradations were excluded. The final high-quality paired dataset consists of 7,930 patch pairs, each with a resolution of 512 ×512 pixels. For LLRetina_LL2, only 430 pairs of original images without image registration and quality cleaning preprocessing are provided.
DOI: 10.5281/zenodo.14866079
title: Data for When Low-Smoke Fuels Backfire: The Dilemma of Ultrafine Particle Emissions
DOI: 10.5281/zenodo.16736420
title: My example data

description: This is my example data.
DOI: 10.5281/zenodo.17064590
title: PGM France — Code analytique (embargo)

description: Code analytique associé au préprint EcoEvoRxiv (DOI 10.32942/X2KM03).Ce dépôt contient le script R utilisé pour analyser la distribution etles noyaux périphériques de la Pie-grièche méridionale (Lanius meridionalis) en France.Les données brutes d’occurrence ne sont pas incluses (licences/sensibilité).Seuls le code et des produits dérivés non sensibles (ex. rasters agrégés)seront disponibles. Accès : embargo jusqu’à l’acceptation de l’article soumis à Alauda.
DOI: 10.5281/zenodo.15682249
title: Dataset. The role of bat caves in the conservation of genetic diversity: insights from Pteronotus bats (Chiroptera: Mormoopidae) from Brazil's drylands.

description: This dataset contains filtered SNP VCF files and the shell scripts used in the analysis of RADseq data from two bat species, Pteronotus gymnonotus and Pteronotus personatus, sampled in the Brazilian Caatinga. These data support the results presented in the associated manuscript, which explores genetic diversity and population structure using Stacks v2, PLINK, and R.

The role of bat caves in the conservation of genetic diversity: insights from Pteronotus bats (Chiroptera: Mormoopidae) from Brazil’s drylands.

Fernanda Ito1,2,3, Veronika N Laine3, Enrico Bernard1*, Thomas M Lilley3*

1 Laboratório de Ciência Aplicada à Conservação da Biodiversidade, Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil.

2 Programa de Pós-Graduação em Biologia Animal, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil. 

3 BatLab Finland, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.

* Equal senior authorship.

* Correspondence: enrico.b2@gmail.com                                                   https://orcid.org/0000-0002-2304-1978thomas.lilley@helsinki.fi                                          https://orcid.org/ 0000-0001-5864-4958

 

Included files:- Filtered VCF files for both species- Shell scripts for ustacks, cstacks, sstacks, populations, and post-processing- Population mapping files

The data were generated using the Stacks v2 pipeline and are intended to ensure reproducibility and transparency of the analyses.