cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.561f1
title: Data from: When do trade-offs occur? The roles of energy constraints and trait flexibility in a bushcricket

description: In many animal species, the expression of sexually-selected traits is
 negatively correlated with survival traits such as immune function, a
 relationship termed a ‘trade-off’. But an alternative in which
 sexually-selected traits are positively correlated with survival traits is
 also widespread. The nature of inter-trait relationships may be largely
 determined by overall energy expenditure, energy availability, and trait
 flexibility, with trade-offs expected when individuals are subject to
 energy constraints. We tested this hypothesis in Ephippiger diurnus, a
 European bushcricket in which males are distinguished by two prominent
 sexually-selected traits, acoustic calls and a large spermatophore
 transferred to the female at mating, and where immune function may be
 critical in survival. E. diurnus are distributed as small, isolated
 populations that are differentiated genetically and behaviorally. We
 analyzed songs, spermatophores, and the immune function in male
 individuals from eight populations spanning a range of song types. As
 predicted, we only found trade-offs in those populations that expended
 more energy on song and were less flexible in their ability to adjust that
 expenditure. Ultimately, energy constraints and resulting trade-offs may
 limit the evolution of song exaggeration in E. diurnus populations
 broadcasting long calls comprised of multiple ‘syllables’.
description: Data on Ephippiger
 diurns male call, spermatophore size and immune responsedryad ephippiger
 tradeoffs.xlsx
DOI: 10.5061/dryad.8nh1q
title: Data from: Evolution of pleiotropic costs in experimental populations

description: The fitness of populations adapting to new environments is expected to
 decline in different environments, but empirical studies often do not lend
 support for such adaptation costs. We test the idea that the initial
 fitness of the selected populations in the environment where the cost is
 estimated is key for interpreting tests of ecological trade-offs. We
 isolated single clones of the yeast Saccharomyces cerevisiae every ~250
 generations from replicate experimental lineages that had been selected
 during 5000 generations in a glucose-limited environment. We then selected
 these clones in a galactose-limited environment for ~120 generations.
 Finally, we estimated single-clone fitness in both environments, before
 and after selection on galactose. The pleiotropic effects on glucose of
 selection on galactose evolved from positive to negative as fitness in
 glucose increased, providing strong support for the importance of initial
 fitness for determining the sign and magnitude of pleiotropic effects.
 This demonstrates that the sign of pleiotropic effects for fitness
 following adaptation to a new environment can change during long-term
 adaptation to an original environment. We also found no relationship
 between the size of the fitness changes in galactose and glucose, such
 that pleiotropic effects in glucose became relatively smaller as the sizes
 of direct effects on galactose increased.
description: Jasmin_Zeyl_JEB_dataData used in "Evolution of pleiotropic costs in experimental populations" by Jean-Nicolas Jasmin and Clifford Zeyl, published in Journal of Evolutionary Biology (2013).
DOI: 10.15468/dl.mvnkhg
title: Occurrence Download

description: A dataset containing 1168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saurauia tristyla",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1168 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001110-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.f8c5r7q
title: Data from: One size does not fit all: caste and sex differences in the response of bumblebees (Bombus impatiens) to chronic oral neonicotinoid exposure

description: Neonicotinoid insecticides have been implicated in the rapid global
 decline of bumblebees over recent years, particularly in agricultural and
 urban areas. While there is much known about neonicotinoid toxicity
 effects at the colony stage of the bumblebee annual cycle, far less is
 known about such effects at other stages critical for the maintenance of
 wild populations. In the present work, individual-based feeding assays
 were used to show that chronic consumption of the widely used
 neonicotinoid clothianidin at a field-realistic average rate of 3.6 and
 4.0 ng/g·bee/day reduces survival of queen and male bumblebees,
 respectively, within a 7-day period. In contrast, worker survival was
 unaffected at a similar consumption rate of 3.9 ng/g·bee/day. To test the
 hypothesis that males have a lower tolerance for oral clothianidin
 exposure than workers due to their haploid genetic status, RNAseq analysis
 was used to compare the transcriptomic responses of workers and males to
 chronic intake of clothianidin at a sub-lethal dose of 0.37ng/bee/day for
 5 days. Surprisingly, clothianidin consumption only altered the expression
 of 19 putative detoxification genes in a sex-specific manner, with 11/19
 genes showing increased expression in workers. Sub-lethal clothianidin
 exposure also altered the expression of 40 genes associated with other
 major biological functions, including locomotion, reproduction, and
 immunity. Collectively, these results suggest that chronic oral toxicity
 effects of neonicotinoids are greatest during mating and nest
 establishment phases of the bumblebee life cycle. Chronic oral toxicity
 testing on males and queens is therefore required in order to fully assess
 the impact of neonicotinoids on wild bumblebee populations.
description: Mobley_Gegear_bumblebee_dataNormalized read count for clothianidin-sensitive genes in male and worker B. impatiens
DOI: 10.5061/dryad.p5k95
title: Data from: Rapid change in parasite infection traits over the course of an epidemic in a wild host–parasite population

description: By combining a field study with controlled laboratory experimentation, we
 examined how infection traits of the sterilizing bacterium, Pasteuria
 ramosa, changed over the course of a growing season in a natural
 population of its crustacean host Daphnia magna. The number of parasite
 transmission spores per infected host increased ten-fold over the course
 of the season, concomitant with a decline in the density of infected
 hosts. Plausible explanations for this variation include changes in
 environmental conditions, changes in host quality, or that parasite
 migration or natural selection caused a genetic change in the parasite
 population. We sought to distinguish some of these possibilities in a
 laboratory experiment. Thus, we preserved field-collected parasite spores
 throughout the season, and later exposed a set of hosts to a fixed dose of
 these spores under controlled laboratory conditions. Parasites collected
 late in the season were more infectious and grew more rapidly than
 parasites collected early in the season. This result is compatible with
 the hypothesis that the observed increase in infectivity in the field was
 due to genetic change, i.e. evolution in the P. ramosa population.
description: AuldetalOikosField-collected data. Details in ReadMe file
DOI: 10.5061/dryad.530
title: Data from: Data set incongruence and correlated character evolution: an example of functional convergence in the hind-limbs of stifftail diving ducks

description: The unwitting inclusion of convergent characters in phylogenetic estimates
 poses a serious problem for efforts to recover phylogeny. Convergence is
 not inscrutable, however, particularly when one group of characters tracks
 phylogeny and another set tracks adaptive history. In such cases,
 convergent characters may be correlated with one or a few functional
 anatomical units and readily identifiable using comparative methods.
 Stifftail ducks (Oxyurinae) offer one such opportunity to study correlated
 character evolution and function in the context of phylogenetic
 reconstruction. Morphological analyses place stifftail ducks as part of a
 large clade of diving ducks that includes the sea ducks (Mergini),
 Hymenolaimus, Merganetta, and Tachyeres, and possibly the pochards
 (Aythyini). Molecular analyses, on the other hand, place stifftails far
 from other diving ducks and suggest, moreover, that stifftails are
 polyphyletic. Mitochondrial cytochrome b gene sequences of eight stifftail
 species traditionally supposed to form a clade were compared with each
 other and with sequences from 50 other anseriform and galliform species.
 Stifftail ducks are not the sister group of sea ducks, but lie outside the
 typical ducks (Anatinae). Of the four traditional stifftail genera,
 monophyly of Oxyura and its sister group relationship with Nomonyx are
 strongly supported. Heteronetta probably is the sister group of that
 clade, but support is weak. Biziura is not a true stifftail. Within
 Oxyura, Old World species (O. australis, O. leucocephala, O. maccoa)
 appear to form a clade, with New World species (O. jamaicensis, O.
 vittata) branching basally. Incongruence between molecules and morphology
 is interpreted to be the result of adaptive specialization and functional
 convergence in the hind limbs of Biziura and true stifftails. When
 morphological characters are divided into classes, only hind-limb
 characters are significantly in conflict with the molecular tree. Null
 models of synonomous and nonsynonomous substitution based on patterns of
 codon-degeneracy and chemical dissimilarity, likewise, indicate that the
 nucleotide and amino acid changes postulated by the molecular tree are
 more plausible than those postulated by the morphological tree. These
 findings teach general lessons about the utility of highly adaptive
 characters (in particular those related to foraging ecology) and
 underscore the problems that convergence can pose for attempts to recover
 phylogeny. They also demonstrate how the concept of natural data
 partitions and simple models of evolution (e.g., parsimony, likelihood,
 neutrality) can be used to test the accuracy of independent phylogenetic
 estimates and provide arguments in favor of one tree topology over
 another.
description: McCracken et al Data
 SetMcCracken.txt
DOI: 10.5061/dryad.vn757
title: Data from: Oncological and surgical outcome after treatment of pelvic sarcomas

description: Background and Objectives. Treatment of pelvic tumors remains challenging
 due to complex anatomy, poor oncological outcome and high complication
 rates. We sought to investigate the long-term oncological and surgical
 outcome of these patients. Methods. Between 1980 and 2012, 147 patients
 underwent surgical treatment for pelvic sarcoma. Histological diagnosis
 was Chondrosarcoma in 54, Ewing's Sarcoma/PNET in 37, Osterosarcoma
 in 32 and others in 24 patients. Statistical analysis for the evaluation
 of oncological and surgical outcome was performed by applying Cox
 proportional hazards regression and Fine-Gray regression models for
 competing risk (CR) endpoints. Results. The estimated overall survival
 (OS) to death was 80%, 45% and 37% at 1, 5 and 10 years, respectively.
 Univariate analyses revealed a statistically significant unadjusted
 influence of age age (p=0.038; HR=1.01), margin (p=0.043; HR=0.51) and
 grade (p=0.001; HR=2.27) on OS. Considering the multivariable model, grade
 (p=0.005; HR=3.04) and tumor volume (p=0.014; HR=1.18) presented
 themselves as independent prognostic factors on OS. CR analysis showed a
 cumulative incidence for major complication of 31% at 5 years.
 Endoprosthetic reconstruction had a higher risk for experiencing a major
 complication (p&lt;0.0001) and infection (p=0.001). Conclusions.
 Pelvic resections are still associated with a high incidence of
 complications. Patients with pelvic reconstruction and high volume tumors
 are especially at risk. Consequently, a cautious decision-making process
 is necessary when indicating pelvic reconstruction, although a restrictive
 approach to pelvic reconstruction is not necessarily reasonable when the
 other option is major amputation.
description: becken_out
DOI: 10.5061/dryad.k3j3d
title: Data from: Fe3O4 nanoparticle coated mushroom source biomaterail for Cr(VI) polluted liquid treatment and mechanism research

description: Agrocybe cylindracea substrate-Fe3O4 (ACS-Fe3O4), a Fe3O4 nanoparticle
 coated biomaterial derived from agriculture waste from mushroom
 cultivating, was investigated to remove the hexavalent chromium ions
 (Cr(VI)) from aqueous solution. After modification, the material surface
 become uneven with polyporous and crinkly structure, improving the
 Cr-accommodation ability in a sound manner. Optimized by Taguchi method,
 Cr(VI) removal efficiency was up to 73.88% with 240min, 40°C, pH 3, Cr(VI)
 at 200 mg L-1, dosage at 12 g L-1, rpm at 200. The efficient ions removal
 was due to the combined effect of adsorption and redox. The effect of
 storage time of the material on Cr(VI) removal was small which enhanced
 its value in practical application. Results indicated that metal removal
 was mainly dependent on solution concentration, adsorbent dosage and
 treatment time. The experimental data obtained was successfully fitted
 with Langmuir isotherm model. Thermodynamic study indicated the
 endothermic nature of the process. The results confirmed that ACS-Fe3O4 as
 novel material, with the ability for long-term preservation, could be
 applied for heavy metal remove from wastewater as well as waste cycling.
description: The data for Taguchi
 experimentThe design, calculation,
 and analysis of the Taguchi experimentdata
 upload.xlsx
DOI: 10.5061/dryad.5ts819f
title: Data from: Pollination biology and reproductive phenology of the federally endangered endemic Physaria globosa (Brassicaceae) in Tennessee

description: A study on the reproductive biology of the federally endangered Physaria
 globosa was conducted near Hartsville, TN, at one of the largest known
 populations of the species from February through July 2016. Objectives
 included (a) establishment of baseline reproductive phenology for P.
 globosa, (b) documentation of the diversity and frequency of floral
 visitors, and (c) determination of effective insect pollen vectors.
 Flowers were open for three days and displayed characteristics typical of
 outcrossing. Six insect species were identified as effective vectors for
 P. globosa pollen, including two dipterans and four halictid bees. While
 pollen loads were not significantly different among the vectors, floral
 visitors were ranked by frequency in descending order as follows:
 Nemotelus bruesii, Toxomerus geminatus, Lasioglossum illinoense, Halictus
 ligatus, Lasioglossum versatus, and Augochlorella striata. Information on
 natural history of this species is vital to aiding conservation efforts
 for P. globosa across its range.
description: Physaria globosa
 pollination and phenologyThese data include
 pollen proportions, morphology and location, collection times, and ant
 pollen counts. These data were accrued from observance of a wild
 population of Physaria globosa in 2016-2017, and analyzed using R package
 RVAideMemoire v 0.9-62.Manuscript 1 data
 (3-20-18).xlsx
DOI: 10.5061/dryad.1n4f0b3
title: Data from: The effect of plant identity and mixed feeding on the detection of seed DNA in regurgitates of carabid beetles

description: Carabids are abundant in temperate agroecosystems and play a pivotal role
 as biocontrol agents for weed seed and pest regulation. While there is
 good knowledge regarding their effects on invertebrate pests, direct
 evidence for seed predation in the field is missing. Molecular approaches
 are ideally suited to investigate these feeding interactions; however, the
 effects of an omnivorous diet, which is characteristic for many carabid
 species, and seed identity on the detection success of seed DNA has not
 yet been investigated. In a series of feeding experiments, seeds of six
 different Central European weed species were fed to beetles of the species
 Pseudoophonus rufipes, to determine post-feeding seed DNA detection rates
 and how these are affected by plant identity, meal size and chemical seed
 composition. Moreover, we investigated the effect of a mixed diet of seed
 and mealworm on prey DNA detection. Four out of six seed species were
 detectable for up to five days after consumption and seed species identity
 significantly affected post-feeding detection rates. Detectability was
 negatively influenced by protein content and seed mass, whereas oil
 content and meal size had a positive effect. The mixed diet led to both
 increased detection rates and post-feeding detection intervals of seed
 DNA. This suggests that mixed feeding leads to an enhancement of food
 detection intervals in carabid beetles and that seed identity, their
 chemical composition and meal size can affect DNA detection of consumed
 seeds. These aspects and potential implications of this non-invasive
 approach are discussed as they can become highly relevant for interpreting
 field derived data.
description: Granivorous carabids
 DryadTable1 for the feeding
 experiments of Pseudoophonus rufipes fed with seeds of 5 different plant
 species and Table2: mixed feeding experiment of P.rufipes with Tenebrio
 molitor and seeds of two different plant species - detection of the food
 types using general molecular markers
DOI: 10.5061/dryad.5j192
title: Data from: Signs of a vector’s adaptive choice: on the evasion of infectious hosts and parasite-induced mortality

description: Laboratory and field experiments have demonstrated in many cases that
 malaria vectors do not feed randomly, but show important preferences
 either for infected or non-infected hosts. These preferences are likely in
 part shaped by the costs imposed by the parasites on both their vertebrate
 and dipteran hosts. However, the effect of changes in vector behaviour on
 actual parasite transmission remains a debated issue. We used the natural
 associations between a malaria-like parasite Polychromophilus murinus, the
 bat fly Nycteribia kolenatii and a vertebrate host the Daubenton's
 bat Myotis daubentonii to test the vector's feeding preference based
 on the host's infection status using two different approaches: 1)
 controlled behavioural assays in the laboratory where bat flies could
 choose between a pair of hosts; 2) natural bat fly abundance data from
 wild-caught bats, serving as an approximation of realised feeding
 preference of the bat flies. Hosts with the fewest infectious stages of
 the parasite were most attractive to the bat flies that did switch in the
 behavioural assay. In line with the hypothesis of costs imposed by
 parasites on their vectors, bat flies carrying parasites had higher
 mortality. However, in wild populations, bat flies were found feeding more
 based on the bat's body condition, rather than its infection level.
 Though the absolute frequency of host switches performed by the bat flies
 during the assays was low, in the context of potential parasite
 transmission they were extremely high. The decreased survival of infected
 bat flies suggests that the preference for less infected hosts is an
 adaptive trait. Nonetheless, other ecological processes ultimately
 determine the vector's biting rate and thus transmission. Inherent
 vector preferences therefore play only a marginal role in parasite
 transmission in the field. The ecological processes rather than
 preferences per se need to be identified for successful epidemiological
 predictions.
description: Data on wild captured
 Myotis daubentoniicapture_data.csvResults from the host-choice experimenthostchoice.csvResults from the bat fly survival experimentsurvival.csv
DOI: 10.6084/m9.figshare.31155157
title: The genome of PSAY25

description: Whole-genome sequencing analysis of PSAY25
DOI: 10.6084/m9.figshare.31155157.v1
title: The genome of PSAY25

description: Whole-genome sequencing analysis of PSAY25
DOI: 10.5061/dryad.f6rc2
title: Data from: Phenotypic shift in Wolbachia virulence towards its native host across serial horizontal passages

description: Vertical transmission mode is predicted to decrease the virulence of
 symbionts. However, Wolbachia, a widespread vertically transmitted
 endosymbiont, exhibits both negative and beneficial effects on arthropod
 fitness. This ‘Jekyll and Hyde’ behaviour, as well as its ability to live
 transiently outside host cells and to establish new infections via
 horizontal transmission, may reflect the capacity of Wolbachia to exhibit
 various phenotypes depending on the prevailing environmental constraints.
 To study the ability of Wolbachia to readily cope with new constraints, we
 forced this endosymbiont to spread only via horizontal transmission. To
 achieve this, we performed serial horizontal transfers of haemolymph from
 Wolbachia-infected to naive individuals of the isopod Armadillidium
 vulgare. Across passages, we observed phenotypic changes in the symbiotic
 relationship: (i) The Wolbachia titre increased in both haemolymph and
 nerve cord but remained stable in ovaries; (ii) Wolbachia infection was
 benign at the beginning of the experiment, but highly virulent, killing
 most hosts after only a few passages. Such a phenotypic shift after
 recurrent horizontal passages demonstrates that Wolbachia can rapidly
 change its virulence when facing new environmental constraints. We
 thoroughly discuss the potential mechanism(s) underlying this phenotypic
 change, which are likely to be crucial for the ongoing radiation of
 Wolbachia in arthropods.
description: qPCR_hemocytes_evolexpqPCR_nerve_cord_evolexpqPCR_ovaries_evolexphemocytes_infected_proportion_evolexpmortalities_histogram_evolexpsurvival_curves_evolexp