cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7129554
title: LMAS Supplemental Material

description: LMAS is an automated workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly software using defined mock communities. As proof of concept, the eight bacterial genomes and four plasmids, in tripled form, of the ZymoBIOMICS Microbial Community Standards are made available to be used as reference. Simulated raw sequence data of the mock communities with evenly distributed reads, generated from the reference genomes, with and without error, were obtained with inSilicoSeq. Project repository: https://github.com/cimendes/LMAS
DOI: 10.5281/zenodo.7587641
title: DATA_Ishibashi(2023)

description: Data of Ishibashi (2023) for Open Research.
DOI: 10.5291/ill-data.6-05-1012
title: Dynamics of glycerol-water mixture at 0.7 molar ratio in the temperature and pressure dimension
DOI: 10.6084/m9.figshare.26768386.v2
title: <b>New Late Cretaceous Paleomagnetic Results from the eastern Qiangtang Terrane: Implications for the Postcollisional Extrusion and Convergence of the Southeastern Tibetan Plateau</b>

description: To constrain the postcollisional extrusion and convergence of the southeastern Tibetan Plateau, we report a reliable paleomagnetic dataset from Late Cretaceous redbeds of the eastern Qiangtang Terrane (QT) where is just situated at the front edge of Eastern Himalayan Syntaxis.
DOI: 10.6084/m9.figshare.27320373
title: Data and code: Seedling recruitment after fire: Disentangling the roles of microsite conditions and seed availability

description: Data and code necessary to replicate analyses in Beck and Wagenius. Seedling recruitment after fire: Disentangling the roles of microsite conditions and seed availability.
DOI: 10.6084/m9.figshare.27614073
title: Questionnaire regarding knowledge of third molar extraction

description: this questionnaire consist of 2 parts first part: questions regarding the demographic data and previous history of third molar extraction second part: questions about the knowledge of participants regarding third molar extraction
DOI: 10.6084/m9.figshare.27826740
title: Supplementary Material for: THE IMPACT OF VASCULAR RISK FACTORS ON CEREBRAL AMYLOID ANGIOPATHY: A COHORT STUDY IN HEREDITARY CAA AND A SYSTEMATIC REVIEW IN SPORADIC CAA

description: Background: Cerebral amyloid angiopathy (CAA) has a remarkably variable disease course, even in monogenetic hereditary forms. Our aim was to investigate the prevalence of vascular risk factors and their effect on disease onset and course in Dutch-type hereditary (D-)CAA and sporadic CAA.
Methods: We performed a cohort study in D-CAA to investigate the association between vascular risk factors (hypertension, hypercholesterolemia, smoking and alcohol use) and age of intracerebral hemorrhage (ICH) onset and time of ICH recurrence with survival analyses. In addition, we performed a systematic review to assess the prevalence of vascular risk factors and their effect on clinical outcome in sporadic CAA. We searched PubMed, Embase, Web of Science and COCHRANE Library, from 1987-2022 and included cohorts with ≥10 patients. We created forest plots, calculated pooled estimates and reported variability (heterogeneity plus sampling variability) and risk of bias.
Results: We included 70 participants with D-CAA (47% women, mean age 53y). Sixteen (23%) had hypertension, 15 (21%) hypercholesterolemia, 45 (64%) were smokers and 61 (87%) used alcohol. We found no clear effect of vascular risk factors on age of first ICH (log-rank test hypertension: p=0.35, hypercholesterolemia: p=0.41, smoking: p=0.61 and alcohol use: p=0.55) or time until ICH recurrence (log-rank test hypertension: p=0.71, hypercholesterolemia: p=0.20 and smoking: p=0.71). We identified 25 out of 1234 screened papers that assessed the prevalence of risk factors in CAA and 6 that reported clinical outcomes. The pooled prevalence estimates of hypertension was 62% (95%CI:55%-69%), diabetes 17% (95%CI:14%-20%), dyslipidemia 32% (95%CI:23%-41%), and tobacco use 27% (95%CI:18%-36%). One study reported study diabetes and hypertension to be associated with a lower risk of recurrent ICH, whereas another study reported hypertension to be associated with an increased risk. All other studies showed no association between vascular risk factors and clinical outcome. High quality studies focusing on vascular risk factors were lacking.
Conclusions: In patients with D-CAA and sporadic CAA the prevalence of vascular risk factors is high. Although this suggests an opportunity for prevention, there is no clear association between these risk factors and CAA-related ICH onset and recurrence.
DOI: 10.7910/dvn/qi2t9a
title: ICEWS Weekly Event Data

description: Event data consists of coded interactions between socio-political actors (i.e., cooperative or hostile actions between individuals, groups, sectors and nation states). Events are automatically identified and extracted from news articles by the BBN ACCENT event coder. These events are essentially triples consisting of a source actor, an event type (according to the CAMEO taxonomy of events), and a target actor. Geographical-temporal metadata are also extracted and associated with the relevant events within a news article. THE ICEWS DATASET WAS DISCONTINUED ON 11 APRIL 2023. A COMPLETELY NEW, BUT RELATED DATASET, POLECAT, CAN BE FOUND AT doi.org/10.7910/DVN/AJGVIT.
DOI: 10.17632/499skr38np.1
title: Optimizing In-Situ Measurement of Representative BVOC Emission Factors Considering Intraspecific Variability

description: The measured data for the manuscript "Optimizing In-Situ Measurement of Representative BVOC Emission Factors Considering Intraspecific Variability".
DOI: 10.17632/rdg9ypd8jw.1
title: Building the Albanides by deep underplating

description: This repository contains the thermochronologic data (Apatite (U-Th-Sm)/He and Apatite Fission Track) supporting the research titled "Building the Albanides by deep underplating"
DOI: 10.17632/wh9xk5mp9m.3
title: The COVID-19 risk perception: A survey on socioeconomics and media attention

description: From a sample of 391 Vietnamese respondents aged from 15 to 47 years, the present study found that geographical regions and behaviors in using social media have a positive impact on the risk perception of COVID-19 epidemic in Vietnam.
DOI: 10.17909/rhtx-nh07
title: HST observations of SDSS J1029+2623
DOI: 10.18462/iir.icr.2015.0845
title: Development of a water vapor compressor for high temperature heat pump applications.

description: A centrifugal water vapor (steam) compressor has been developed for the high temperature range (90-110°C) for industrial heat pumps in the 100-500 kW range with a 20-25°C temperature lift per stage. The compressor is based on a high speed gear from automotive turbochargers, thus allowing standard electrical motors for the driveline instead of the usual direct drive with expensive high speed motors. The background for the development is an increased interest for high temperature heat pumps for various industrial applications, in particular in response to the general need of reducing fossil fuel consumption. There is a number of applications for the compressor. It can work as a direct steam generator as an alternative to standard boilers, and if operated in an open configuration along with a number of drying and concentration applications. In a closed configuration it can work as a general purpose high temperature heat pump.
DOI: 10.18462/iir.icr.2019.0778
title: Theoretical and experimental investigation on a very high temperature heat pump with water refrigerant.
DOI: 10.25540/awjs-gmjb
title: The NUS hand posture datasets II

description: This is a 10 class hand posture dataset. The postures are shot in and around National University of Singapore (NUS), against complex natural backgrounds, with various hand shapes and sizes. The postures are performed by 40 subjects, with different ethnicities, against different complex backgrounds. The subjects include both males and females in the age range of 22 to 56 years. The subjects are asked to show the 10 hand postures, 5 times each. They are asked to loosen the hand muscle after each shot, in order to incorporate the natural variations in the postures. The dataset also consist of a set of background images which does not contain any of the hand postures. This dataset can be used for academic research purposes free of cost, by citing both the original article and this data package. Pisharady, P.K.,Vadakkepat, P.,Loh, A.P. (2013-02) Attention based detection and recognition of hand postures against complex backgrounds. International Journal of Computer Vision 101 (3) : 403-419. https://doi.org/10.1007/s11263-012-0560-5 This dataset is also available at https://www.ece.nus.edu.sg/stfpage/elepv/NUS-HandSet/.
DOI: 10.48612/msupe/236d-93e5-nta6
title: Опрос родителей по использованию настольных и цифровых игр дошкольниками

description: Представлена база данных эмпирического исследования.  С целью сравнения данных по использованию настольных и цифровых игр была разработана специальная анкета «Современные дети: цифровые игры VS настольные игры» (Саломатова О.В., Токарчук Ю.А., 2023), предназначенная для родителей дошкольников, состоящая из 29 закрытых вопросов. Анкетирование проводилось с помощью google-формы, размещенной в сети Интернет (широта охвата – территория РФ). В опросе приняли участие родители детей 3-7 лет (N=556). Количественный анализ эмпирических данных был выполнен с использованием методов описательной статистики, расчеты проведены в статистическом пакете IBM SPSS Statistics 23.
DOI: 10.5258/soton/wp00743
title: Interim: Unconstrained and constrained estimates of 2021-2022 total number of people per grid square, adjusted to match the corresponding UNPD 2022 estimates and broken down by gender and age groups (1km resolution), version 1.0

description: These data include gridded estimates of population at approximately 1km for 2021 and 2022. These datasets results were produced based on using the spatial distribution of unconstrained and constrained population datasets for individual countries for 2020 datasets with country totals were adjusted to match the corresponding official United Nations population estimates, that have been prepared by the Population Division of the Department of Economic and Social Affairs of the United Nations Secretariat (World Population Prospects 2022) for the relevant years, and broken down by gender and age groups.
DOI: 10.5281/zenodo.10013836
title: Freshly-developed Low-latitude Postmidnight-to-Dawn F-region Ionospheric Irregularities over China on November 13, 2015

description: The dataset reports the calculated slant Total Electron Content (STEC) from 4 GPS receivers came from the Crustal Movement Observation Network of China on 13 November 2015. The temporal resolution of data is thirty seconds.
DOI: 10.5281/zenodo.10555733
title: Cherri - Accurate detection of functional RNA-RNA interactions sites

description: CheRRI -  Pipeline for the Identification of putative RNA-RNA interaction sites.

 

This repository contains all CheRRI's models computed and mentioned in the content.txt, listing data and their descriptions. All models can be used to classify interaction sites in CheRRI's eval mode.

 

The source code for CheRRI is avalbile on GitHub and can be cited using this Software Heritage citation:



Müller T, Mautner S, Videm P, Eggenhofer F, Raden M, Backofen R (2024) CheRRI - Accurate classification of the biological relevance of putative RNA-RNA interaction sites (Version 0.8). [Computer software]. Software Heritage, https://archive.softwareheritage.org/swh:1:snp:ebac091117f9c46fb5f0fedd3ef23ec2905ced6c;origin=https://github.com/BackofenLab/Cherri








The pipeline contains Machine Learning segments which were annotated using DOME:






https://dome.ds-wizard.org/projects/74d0e01c-6374-41e9-93b8-2889d6a8fe25
DOI: 10.5281/zenodo.11149496
title: PSECCO Polar Postdoc Leadership Workshop "What makes a good leader?"

description: Answers to prompts related to leadership qualities that the 2023 PPLW workshop participants valued.Attached is the revised calculation of emotional intelligence for the two leadership questions.  In the excel file there are three tabs:1) Raw data - Sticky note images2) Sticky note images 3) Calculation Spreadsheet (table in red text is the overall calculation table).  Formulas are built in so you can modify the 1 or 2 and it will automatically recalculate.
DOI: 10.5281/zenodo.13489838
title: Data and code for, "Large language models design sequence-defined macromolecules via evolutionary optimization"

description: # Codes and data for "Large language models design sequence-defined macromolecules via evolutionary optimization"Note this repository contains codes and data files for the manuscript. This is a snapshot of the repository, frozen at the time of submission.# Codes## LLM codes- `run_claude.py` - the routine for performing LLM-based rollouts; intended for command line execution using argparse- `message_utils.py` - utilities for constructing and parsing messages for LLM I/O- `model_utils.py` - lightweight utilities for retrieving formatted predictions from the RNN ensemble- `target_defs.py` - defines the sequence, locations, and natural language descriptions of the target structures- `ask_about_oracle.ipynb` - asks the LLM to speculate about the nature of the optimization task## other algorithms- `active_learning.ipynb` - use EI acquisition with RF surrogate to label new sequences; includes an unused tokenization scheme- `evolutionary_algorithm.ipynb` - use DEAP library to perform evolutionary optimization- `random_sampling.ipynb` - sample sequences randomly from all possible sequences## postprocessing- `process_aggregated_logs.py` - reads data from the raw log files and prepares them for visualization- `process_sample_rollouts.py` - reads data from the raw log files and prepares individual rollouts## visualization- `figure1b.ipynb` - renders panel b of Fig. 1- `figure1efg.ipynb` - renders the last row of Fig. 1 (panels e-g)- `figure2.ipynb` - renders all of Fig. 2- `figure_si.ipynb` - renders Figs. S1 and S2- `figure_md_validation.ipynb` - renders Fig. S3# Data files- `prompts/`  - `prompt-scientific-v4.4.yml` - the full text of the scientific prompt, to be read by `run_claude.py`  - `prompt-oracle-v4.4.yml` - the full text of the oracle prompt, to be read by `run_claude.py`- `models/` - the TorchScript RNN models used to make predictions- `data/`  - `embeddings` - calculated embeddings for a collection of sequences from our prior work  - `llm-logs` - the raw logs obtained from the Claude 3.5 Sonnet LLM (other algorithms made to look like the LLM logs after the fact)  - `llm-logs-opus` - the raw logs obtained from the Claude 3.0 Opus LLM (used in the first draft of the article, replaced by Claude 3.5 Sonnet)   - `all-rollouts-kltd.csv` - postprocessed logs for all the rollouts using the "top $k < d^*$" metric  - `all-rollouts-topkd.csv` - postprocessed logs for all the rollouts using the "mean $d$ for top $k$" metric  - `sample-rollout-membranes-x-3.csv` - postprocessed logs for a single rollout replica, `x` = each algorithm type  - `snapshots` - png snapshots of MD simulation results at different locations in the manifold
DOI: 10.5281/zenodo.14039335
title: Code and data of  "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"

description: Code and data to reproduce the analyses and figures presented in "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"
DOI: 10.5441/002/edbt.2022.01
title: Revisiting Runtime Dynamic Optimization for Join Queries in Big Data Management Systems
DOI: 10.6073/pasta/da60200f3f71a5bde3f469cc72d47b4d
title: SBC LTER: Time series of quarterly NetCDF files of kelp biomass in the canopy from Landsat 5, 7 and 8, since 1984 (ongoing)

description: This data file represents a time series of canopy area of giant kelp, Macrocystis pyrifera, and bull kelp, Nereocystis luetkeana, and canopy biomass of giant kelp derived from Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), and Landsat 9 Operational Land Imager 2 satellite imagery, along with relevant metadata. The kelp canopy is composed of the portions of fronds and stipes floating on the surface of the water. Canopy area (m) data are given for individual 30 x 30 meter pixels for all coastal areas of Baja California, Mexico, California, Oregon, and the outer coast of Washington (including offshore islands). Biomass data (wet weight, kg) are given for individual 30 x 30 meter pixels in the coastal areas extending from near Ano Nuevo, CA through the southern range limit in Baja California (including offshore islands), representing the range where giant kelp is the dominant canopy forming species. Data were derived from the three Landsat sensors listed above. Observations are made on a 16 day repeat cycle, for each instrument, but the temporal coverage is irregular because of cloud cover, instrument failure, and the mission length of each sensor (TM: 1984 – 2011, ETM+: 1999 – present, OLI: 2013 – present). Estimates of canopy area are derived from the fractional cover of kelp canopy determined from satellite surface reflectance. Estimates of kelp canopy biomass are derived from the relationship between giant kelp fractional cover determined from satellite surface reflectance and empirical measurements of giant kelp canopy biomass in long-term SBC LTER study plots obtained using SCUBA. The different Landsat sensors were calibrated to each other using simulated Landsat data derived from hyperspectral imagery. Missing data due to the ETM+ scan line corrector error were filled using a synchrony-based gap filling method. Data are organized into a single NetCDF file and contain the quarterly area and biomass means for each Landsat pixel across the three sensors. Relevant metadata such as number of Landsat estimates from which the mean was derived, the number of estimates from each sensor, standard error for each quarterly estimate, spatial coordinates, and date are all included in the file. For assistance with the data, please contact sbclter@msi.ucsb.edu.
DOI: 10.6084/m9.figshare.24421210
title: Challenges and opportunities in truck electrification unveiled by big operational data

description: The datasets contain life-cycle CO2 emission of diesel and electric truck fleets, total cost of ownership of diesel and electric truck fleets, and material carbon emission results in China.
DOI: 10.6084/m9.figshare.25483339
title: Source data and custom script for Miao <i>et al. </i><i>Nature Neuroscience, </i>2024

description: <b>This is the data deposit for Miao et al., </b><b><i>Nature Neuroscience</i></b><b>, 2024. Files include statistical source data for all the main figures and extended figures. This also includes a custom MATLAB script that quantifies sleep in the model animal. Details of the data and the script can be found in the publication.</b>
DOI: 10.6084/m9.figshare.27752274
title: Supplementary Material for: Impact of early oral feeding on postoperative outcomes after elective colorectal surgery: a systematic review and meta-analysis

description: Introduction: This study aimed to evaluate the influence of early oral feeding (EOF), a key component of enhanced recovery after surgery protocols, on postoperative outcomes in patients undergoing elective colorectal surgery.
Methods: We searched the Medline, Embase, Cochrane Library, and KoreaMed databases to include randomized clinical trials comparing EOF that started on postoperative day 1 and conventional oral feeding that commenced after first flatus. Two authors independently screened the retrieved records and extracted data. The primary outcome was total complications. Data were pooled, and the overall effect size was calculated. 
Results: We screened 13 studies, and 1,556 patients were included in the analysis. The EOF group exhibited fewer total complications (odds ratio [OR] 0.50; 95% confidence interval [CI] 0.38 to 0.65). Anastomotic leakage was also reduced in the EOF group (OR 0.40; 95% CI 0.19 to 0.83); however, an increased incidence of vomiting (OR 1.58; 95% CI 1.11 to 2.26) as well as a tendency of higher rate of nasogastric tube reinsertion (OR 1.49; 95% CI 0.96 to 2.31) were observed. The EOF group demonstrated a decreased time to flatus (mean difference [MD] -0.87; 95% CI -1.00 to -0.74) and shortened hospital stay (MD -0.76; 95% CI -0.89 to -0.6). No significant difference in mortality was observed between the two groups (OR 0.54; 95% CI 0.15 to 2.01).
Conclusion: EOF proved to be a safe and effective practice for patients undergoing elective colorectal surgery. However, the increased incidence of vomiting necessitates careful consideration.
DOI: 10.6084/m9.figshare.27755649
title: Supplementary Material for: Facial Filler Injections– Questions Patients Ask and Where They Find Answers

description: Introduction: The most pressing questions patients ask about facial fillers and the sources to which patients are directed remain incompletely understood. 
Methods: The search engine optimization tool Ahrefs was utilized to extract Google metadata on searches performed in the United States. The most frequently asked questions were categorized by topic, while websites were categorized by authoring organization. JAMA benchmark criteria were used for website information quality assessment.
Results: A total of 300 questions for the term “fillers” were extracted. The majority of search queries (24.0%) and monthly search volume (39.3%) pertained to procedural costs. The mean JAMA score for private practice sources (1.1 ± 0.57) was significantly lower than that of corporate sources (2.6 ± 0.55, p= 0.0003) but not significantly lower than academic pages (1.6 ± 1.34, p=0.483). With respect to monthly search volume, queries concerning lip fillers have been increasingly asked at a rate that exceeds other injection sites. 
Conclusion: Online searches for facial fillers often involve the topic of cost, and frequently direct patients to websites that contain inadequate information on authorship, attribution, disclosure and currency. When compared to other anatomic sites, search queries involving lip fillers have increased over the last three years.