cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8041323
title: Preprocessed dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the pre-processed image datasets of RIBOmap included in "<strong>Spatially Resolved Single-cell Translatomics at Molecular Resolution</strong>" from Zeng et al. Please refer to the README file for more detailed information. <strong>Abstract</strong> The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.5281/zenodo.7660616
title: compositional data for "Chromium isotope behavior during serpentinite dehydration in oceanic subduction zones"

description: Table 1 refer to the Cr isotope results for the meta-serpentinite in this study. Table S1 shows the major and trace element compositions of the studied samples. Table S2 compiles the available Cr isotope compositions of low-grade serpentinites.
DOI: 10.25340/r4/yqceg4
title: Related Data for: Measuring the complexity of equity-centered teaching practice development and validation of a Rasch/Guttman scenario scale

description: The Name Blinded for Review (TEES) Scale was developed to measure the complexity of teaching practice for equity by integrating Rasch measurement and Guttman facet theory. This paper extends the existing work to develop and validate an efficient, short-form TEES Scale that can be used for research and evaluation purposes. The Rasch rating scale model is used to analyze the responses of 354 teachers across the United States. Validity evidence, which addresses the data/theory alignment, item and person fit, rating scale functioning, dimensionality, generalizability, and relations to external variables, is examined to support the adequacy and appropriateness of the proposed score interpretations and uses. The short-form TEES Scale functions well to measure teaching practice for equity and provides evidence for research or evaluation studies on whether and to what extent teachers or candidates learn to enact equity-centered practice. Limitations and future directions of the scale are discussed.
DOI: 10.5281/zenodo.8014347
title: Software Requirements Specifications from the RE@UTS Group

description: This repository contains a list of requirements specifications procured by the requirements engineering laboratory at the University of Technology Sydney (RE@UTS) for reuse in research. These artifacts represent a diverse set of domains and formats, offering a heterogeneous benchmark for studies in requirements engineering.
description: This repository contains the 11 data sets previously hosted at http://research.it.uts.edu.au/re and recovered with Professor Didar Zowghi's permission.
DOI: 10.5281/zenodo.8014346
title: Software Requirements Specifications from the RE@UTS Group

description: This repository contains a list of requirements specifications procured by the requirements engineering laboratory at the University of Technology Sydney (RE@UTS) for reuse in research. These artifacts represent a diverse set of domains and formats, offering a heterogeneous benchmark for studies in requirements engineering.
description: This repository contains the 11 data sets previously hosted at http://research.it.uts.edu.au/re and recovered with Professor Didar Zowghi's permission.
DOI: 10.6084/m9.figshare.23521551
title: Repository data containing Survey Participants' responses in SPSS file

description: SPSS file represents responses from 516 participants gathered by a quantitative survey method. The questionnaire provided context for the study and explained why collecting this data was important. At the bottom of this section, everyone’s approval on participating in the survey and using their responses in survey results in a public setting was requested. As this survey was voluntary and anonymous, the participants had a choice not to participate in it by simply declining the request and withdrawing themselves from the survey without any consequences. After the participants gave their approvals, the following segment (Section II) was permitted to proceed. The next section asked students about their five self-related characteristics which were the independent categorical variables 1) demographic characteristics: gender, 2) socioeconomic characteristics (SES), 3) geographic characteristics: native place, 4) academic characteristics related to higher secondary academic performance (pre-college performance) 5) the psychological and behavioral characteristics. It further constituted four sub-questions related to students’ information about 5-1) the engineering major enrolled in 5-2) priority for type of curriculum delivery 5-3) the most valuable human influence, 5-4) the most effective information source. The next section encompassed Questions related to twelve ECs characteristics including proximity, location and locality, image and reputation, faculty profile, alumni profile, campus placements, quality education, infrastructure and facilities, safety and security, curriculum delivery, value for money and lastly sustainability under COVID-19 was examined. To answer these questions, students were asked to rate on a Likert scale (1 to 5), where 1 represented minimum value and 5 showed maximum value.
DOI: 10.5281/zenodo.8041434
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roger D. Akre, http://www.wikidata.org/entity/Q113243912. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q113243912
DOI: 10.5281/zenodo.8041444
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nélida Sara Troncoso, http://www.wikidata.org/entity/Q9051263. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q9051263
DOI: 10.5281/zenodo.8041443
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nélida Sara Troncoso, http://www.wikidata.org/entity/Q9051263. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q9051263
DOI: 10.5281/zenodo.8019120
title: Statistical uncertainty in the frequency dependence of the intensity scintillation index (S4)

description: This dataset contains scintillation statistics and parameters in support of the paper, "Sun, A. K., Pi, X., Rino, C., and Lee, J. (2023), Statistical uncertainty in the frequency dependence of the intensity scintillation index (S4), Radio Science." The raw GNSS scintillation dataset was collected by Dr. Eurico de Paula at INPE (Instituto Nacional de Pesquisas Espaciais), Brazil.
DOI: 10.25340/r4/ukj90o
title: Related Data for: Impacts of deficit irrigation on photosynthetic performance, productivity and nutritional quality of aeroponically grown Tuscan kale (Brassica oleracea L.) in a tropical greenhouse

description: Tuscan kale was grown aeroponically with 5, 30 and 60 min nutrient spraying intervals (defined as 5 minNSIs, 30 minNSIs and 60 minNSIs). Four weeks after transplanting, some 5 minNSI plants were transferred to a 60 minNSI (5 minNSI → 60 minNSI) and 90 minNSI (5 minNSI → 90 minNSI) for one more week. Significantly lower light-saturated rates of photosynthesis and stomatal conductance were observed for plants grown with a 60 minNSI than with a 5 minNSI. However, all plants had similar internal CO2 concentrations and transpiration rates. Reduced light use efficiency but increased energy dissipation was observed in plants grown in a 60 minNSI. A higher nitrate concentration was observed in 60 minNSI plants compared to 5 minNSI and 30 minNSI plants, while all plants had similar concentrations of total reduced nitrogen, leaf soluble protein and Rubisco protein. Plants grown with prolonged NSIs (deficit irrigation) had lower biomass accumulation due to the inhibition of leaf initiation and expansion compared to 5 minNSIs. However, there was no substantial yield penalty in 5 minNSI → 60 minNSI plants. Enhancements in nutritional quality through deficit irrigation at pre-harvest were measured by proline and total soluble sugar. In conclusion, it is better to grow Tuscan kale with a 5 minNSI for four weeks followed by one week with a 60 minNSI before harvest to reduce water usage, yield penalty and enhance nutritional quality.
DOI: 10.3886/e191041v1
title: ECIN Replication package for "Dishonesty as a Collective-Risk Social Dilemma"

description: Replication package for the article "Dishonesty as a Collective-Risk Social Dilemma". We investigated lying as a collective-risk social dilemma. Misreporting resulted in increased individual earnings but when total claims reached a certain threshold, all group members were at risk of collective sanction, regardless of their individual behavior. Due to selfishness and a lack of coordination, most individuals earned less than the reservation payoff from honest reporting in the group. However, preferences for truth-telling lowered the risk of collective sanction in this setting compared to a social dilemma game in which players could make direct claims without lying. The risk of sanctions decreased with risk aversion and a smaller group size.
DOI: 10.3886/e191041
title: ECIN Replication package for "Dishonesty as a Collective-Risk Social Dilemma"

description: Replication package for the article "Dishonesty as a Collective-Risk Social Dilemma". We investigated lying as a collective-risk social dilemma. Misreporting resulted in increased individual earnings but when total claims reached a certain threshold, all group members were at risk of collective sanction, regardless of their individual behavior. Due to selfishness and a lack of coordination, most individuals earned less than the reservation payoff from honest reporting in the group. However, preferences for truth-telling lowered the risk of collective sanction in this setting compared to a social dilemma game in which players could make direct claims without lying. The risk of sanctions decreased with risk aversion and a smaller group size.
DOI: 10.3886/e191041v2
title: ECIN Replication package for "Dishonesty as a Collective-Risk Social Dilemma"

description: Replication package for the article "Dishonesty as a Collective-Risk Social Dilemma". We investigated lying as a collective-risk social dilemma. Misreporting resulted in increased individual earnings but when total claims reached a certain threshold, all group members were at risk of collective sanction, regardless of their individual behavior. Due to selfishness and a lack of coordination, most individuals earned less than the reservation payoff from honest reporting in the group. However, preferences for truth-telling lowered the risk of collective sanction in this setting compared to a social dilemma game in which players could make direct claims without lying. The risk of sanctions decreased with risk aversion and a smaller group size.
DOI: 10.5281/zenodo.8004476
title: Increased precipitation over land due to climate feedback of large-scale bioenergy cultivation

description: Biophysical effects of different bioenergy crop cultivation scenarios on global water cycles simulated by coupled IPSL-CM model, with ORCHIDEE-MICT-BIOENERGY as the land component and LMDz as the atmosphere component. The spatial resolution of the coupled model was 1.26° latitude × 2.5° longitude (i.e., 143*144 grid cells globally). Datasets includes: 1. Source data and plotting code for Figure 1, the global precipitation changes induced by bioenergy cultivation. 2. Source data and plotting code for Figure 2, the diagnostic precipitation changes for global land area, in and outside of the bioenergy cultivation area. 3. Source data plotting code for Figure 3, the changes in water balance for global land area, in and outside of bioenergy cultivation area, monsoon regions and four different humidity zones.
description: The plotting code for Fig.1 has been corrected.
DOI: 10.5281/zenodo.8004477
title: Increased precipitation over land due to climate feedback of large-scale bioenergy cultivation

description: Biophysical effects of different bioenergy crop cultivation scenarios on global water cycles simulated by coupled IPSL-CM model, with ORCHIDEE-MICT-BIOENERGY as the land component and LMDz as the atmosphere component. The spatial resolution of the coupled model was 1.26° latitude × 2.5° longitude (i.e., 143*144 grid cells globally). Datasets includes: 1. Source data and plotting code for Figure 1, the global precipitation changes induced by bioenergy cultivation. 2. Source data and plotting code for Figure 2, the diagnostic precipitation changes for global land area, in and outside of the bioenergy cultivation area. 3. Source data plotting code for Figure 3, the changes in water balance for global land area, in and outside of bioenergy cultivation area, monsoon regions and four different humidity zones.
DOI: 10.5281/zenodo.8041494
title: Increased precipitation over land due to climate feedback of large-scale bioenergy cultivation

description: Biophysical effects of different bioenergy crop cultivation scenarios on global water cycles simulated by coupled IPSL-CM model, with ORCHIDEE-MICT-BIOENERGY as the land component and LMDz as the atmosphere component. The spatial resolution of the coupled model was 1.26° latitude × 2.5° longitude (i.e., 143*144 grid cells globally). Datasets includes: 1. Source data and plotting code for Figure 1, the global precipitation changes induced by bioenergy cultivation. 2. Source data and plotting code for Figure 2, the diagnostic precipitation changes for global land area, in and outside of the bioenergy cultivation area. 3. Source data plotting code for Figure 3, the changes in water balance for global land area, in and outside of bioenergy cultivation area, monsoon regions and four different humidity zones.
description: The plotting code for Fig.1 has been corrected.
DOI: 10.5281/zenodo.8038502
title: Individual .ttl files for plate VGF146 samples v1.0.1

description: Individual .ttl files for plate VGF146 samples processed using the ENPKG framework
DOI: 10.5281/zenodo.8038501
title: Individual .ttl files for plate VGF146 samples v1.0.1

description: Individual .ttl files for plate VGF146 samples processed using the ENPKG framework
DOI: 10.15151/esrf-es-1118675723
title: Structural and dynamical studies from the Gothenburg BAG

description: The Gothenburg BAG was previously a Gothenburg/Lund BAG, but was remodelled in 2021 so as to reflect the realities that the Lund environment was more focused upon addressing their synchrotron radiation needs through MAX IV Laboratory. Moreover, serial crystallography, both at XFELs and using synchrotron radiation, has become a major of interest of several of the scientists at the University of Gothenburg, and this is not covered in the BAG but within another BAG coordinated at the ESRF. Standard MX using cryo-crystallography, as well as standard SAXS studies, are still an important aspect of our work, but now requires less beamtime than the larger BAG used in the past. Moreover, some of this work is connected to methodology developments or used as a stepping stone towards time-resolved crystallography studies. Overall, we have a diverse collection of projects from the groups in Gothenburg which continue to benefit greatly from access to the ESRF.
DOI: 10.15151/esrf-es-1119943166
title: Danish crystallography BAG

description: Despite PI changes, the BAG will continue to work on diverse areas of structural biology, ranging from fundamental of enzyme mechanisms, structure-based engineering of enzymes for industrial applications, particularly involving degradation and transformation of plant biomass, and viral, microbial and mammalian proteins involved in different aspects of health and disease. Among the specific targets are glycosyltransferases, fluorinases, sterol and sugar transporters, NS5B, Keap1, lytic polysaccharide monooxygenases, glucuronylesterases, phage repressor peptidase, alginate degrading polysaccharide lyases, mucin degrading glycosylhydrolases, type V autotransporters.
DOI: 10.15151/esrf-es-1120140339
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, the National Research Council and Hospital research centres in Italy. The laboratories take advantage of single crystal and small angle X-ray diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth, or aim at characterising macromolecules with potential biotechnological applications.
DOI: 10.15151/esrf-es-1179516907
title: Magnetic Coherent Diffraction Imaging with hard X

description: The purpose of the proposal is to develop a set of new techniques for magnetic imaging at the nanoscale. The techniques rely on the combination of Coherent Diffraction Imaging techniques (3D-CDI, Bragg CDI, ptychography) with magnetic scattering. While this has been done in the soft X-ray range at 3rd generation synchrotron sources to study 2D ferromagnetic materials, only the EBS provides sufficient brilliance to implement similar methods in the hard X-ray range. Using hard X-rays will allow extending the scientific scope to bulk ferromagnetic materials and to thin and bulk antiferromagnetic materials. The imaging techniques should be fully vectorial and have a resolution of ~50 nm and a field of view of a few microns. The project requires instrumental, methodological and numerical developments, which will be beneficial to the ESRF user community. The project is funded until June 2024 by the French research agency (ANR) and the CNRS, including 3 postdoc grants.
DOI: 10.15151/esrf-es-1186978768
title: Electronic and magnetic properties of unquenchable iron oxides

description: The proposed experiment focuses on exploring the electronic configurations and magnetic properties of unquenchable novel iron oxides (here after UNI oxides) (e.g. Fe5O7, Fe6.32O9, Fe7O10), using the Synchrotron Mössbauer Source spectroscopy and Single-Crystal X-ray diffraction up to 130 GPa and 2500 K.
DOI: 10.15151/esrf-es-1186979484
title: Synchrotron Nano-Tomography Characterization of Nanoparticle-Induced Pore Elimination in Laser Additive Manufacturing

description: Laser additive manufacturing of Nickel-based superalloys three-dimensionally prints customized and complex geometries layer-by-layer, but greatly suffers from the solidification cracking during repeatedly rapid melting and solidifying. Ceramic nanoparticles introduced into metal matrices provide an intriguing route to solve solidification cracking issue; however, the nanoparticles-induced melt pool dynamics and resultant dense dispersion remains ambiguous. Here, we propose to apply high-energy nano-tomography to characterize the 3D distribution of nanoparticles, pore and cracks in metal matrices. The interaction between nanoparticles and defects under various processing parameters will be explored. Consequently, the nanoparticle-induced defect elimination will be revealed and provide novel guidelines for processing optimization in industrial applications.
DOI: 10.6084/m9.figshare.23507826
title: Experimental data for paper " <strong>A comparative study of feature selection and feature extraction methods for financial distress identification</strong>"

description: A dataset for PeerJ Computer Science paper.
DOI: 10.6084/m9.figshare.23507826.v1
title: Experimental data for paper " <strong>A comparative study of feature selection and feature extraction methods for financial distress identification</strong>"

description: A dataset for PeerJ Computer Science paper.
DOI: 10.6084/m9.figshare.23521950
title: Supporting data and custom scripts 0615

description: Supporting data and custom scripts for article "Structure and function of lake microbiomes on the Tibetan Plateau".
DOI: 10.5445/ir/1000158547
title: Results SLR Business Process Model Generation
DOI: 10.5281/zenodo.8032918
title: Rainfall maps from commercial microwave link data for Ouagadougou, Burkina Faso

description: Rainfall maps from commercial microwave link data for Ouagadougou, Burkina Faso, accompanying a submission to <em>Journal of Hydrometeorology </em>(<em>JHM</em>) are store in <em>CML_rainfall_maps_Ougadougou.nc</em> . The generation of these rainfall maps is described in the manuscript. The data are stored in a netCDF file with the dimensions <em>x</em>, <em>y</em> and <em>time</em>, <em>longitude</em> and <em>latitude</em> values defining the grid, and the variable <em>rain_rate </em>holding the rainfall maps. The dataset covers the area over Ouagadougou (longitude: -1.61 to -1.415 and latitude: 12.27 to 12.45) in a regular space grid of 72x79 with 0.55 km grid size. The temporal resolution is 5 minutes for the period from 2020-06-29 to 2020-10-10 <em> </em> As supplementary material an animation (<em>Animation_2020_08_21.mp4</em>) showcases two rainfall events from 18:30 to 21:00 UTC on 2020-08-21.
DOI: 10.5281/zenodo.8032917
title: Rainfall maps from commercial microwave link data for Ouagadougou, Burkina Faso

description: Rainfall maps from commercial microwave link data for Ouagadougou, Burkina Faso, accompanying a submission to <em>Journal of Hydrometeorology </em>(<em>JHM</em>) are store in <em>CML_rainfall_maps_Ougadougou.nc</em> . The generation of these rainfall maps is described in the manuscript. The data are stored in a netCDF file with the dimensions <em>x</em>, <em>y</em> and <em>time</em>, <em>longitude</em> and <em>latitude</em> values defining the grid, and the variable <em>rain_rate </em>holding the rainfall maps. The dataset covers the area over Ouagadougou (longitude: -1.61 to -1.415 and latitude: 12.27 to 12.45) in a regular space grid of 72x79 with 0.55 km grid size. The temporal resolution is 5 minutes for the period from 2020-06-29 to 2020-10-10 <em> </em> As supplementary material an animation (<em>Animation_2020_08_21.mp4</em>) showcases two rainfall events from 18:30 to 21:00 UTC on 2020-08-21.