cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.c3x28e
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "GadmGid is USA.10_1",
 "TaxonKey is Ameiva ameiva (Linnaeus, 1758)"
 ]
}

 The dataset includes 561 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022833-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive2138.20240510.9
title: Campylobacter hominis Lawson et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00720
title: Dataset for "Effect of plain versus sugar-sweetened breakfast on energy balance and metabolic health: A randomised crossover trial"

description: The dataset contains data for the study investigating the effect of 3-weeks high (SWEET) versus low (PLAIN) sugar breakfast on energy balance, metabolic health, and appetite. 29 healthy adults (22 women) completed this randomised crossover study. Participants had pre- and post-intervention appetite, health and body mass outcomes measured, and recorded diet, appetite (visual analogue scales) and physical activity for 8 days during each intervention. Interventions were 3-weeks iso-energetic SWEET (30% by weight added sugar; average 32g sugar) versus PLAIN (no added sugar; average 8g sugar) porridge-based breakfast.
The main finding from the data is that energy balance, health markers, and appetite did not respond differently to 3-weeks of high or low sugar breakfasts.
description: This was a randomised crossover study whereby participants were given a plain porridge versus a 30 % by weight sugar sweetened porridge for three weeks. Measures were taken pre- and post- each intervention, and energy balance and appetite behaviours were measured for 8 days during each intervention period.
DOI: 10.15125/bath-00721
title: Dataset for "Polymer nanotube membranes synthesized via liquid deposition in anodic alumina"

description: This dataset includes the following raw data for the polymer nanotube membranes in the study - Roughness data,  Field Emission Scanning Electron Microscopy (FESEM) data, Transmission Electron Microscopy (TEM) data, Water Flow Enhancement and Permeance Data, and Contact Angle Data. These correspond to the following elements in the associated article "Polymer nanotube membranes synthesized via liquid deposition in anodic alumina": 
- Roughness data (Table 1 in the main manuscript);
- FESEM data (Figure 2 and Figure 4 of the manuscript);
- TEM data (Figure 3 of the manuscript);
- Water Flow Enhancement and Permeance Data (Figure 5 and Table 1 of the manuscript);
- Contact Angle Data (Table 1 of the manuscript).
description: A complete description of the experimental methodology for the acquisition of this data is reported in the related manuscript and Electronic Supplementary Information (ESI).
description: Gwyddion version 2.49 (http://gwyddion.net/) was used for AFM data processing; this software may be used to view the .000 and .001 files.
description: Further relevant documentation may be found in the following resources.

   Casanova, S., Borg, M. K., Chew, Y. M. J., and Mattia, D.,  2019.   Surface-controlled water flow in nanotube membranes.    ACS Applied Materials and Interfaces, 11(1), 1689-1698.   Available from: https://researchportal.bath.ac.uk/en/publications/surface-controlled-water-flow-in-nanotube-membranes.   

   Lee, K. P.,  2013.   Fabrication and Applications of Nanoporous Alumina Membranes.     Thesis (PhD).    University of Bath.   Available from: https://researchportal.bath.ac.uk/en/studentTheses/fabrication-and-applications-of-nanoporous-alumina-membranes.   

   Mattia, D., Leese, H., and Lee, K. P.,  2015.   Carbon nanotube membranes: From flow enhancement to permeability.    Journal of Membrane Science, 475(1), 266-272.   Available from: https://researchportal.bath.ac.uk/en/publications/carbon-nanotube-membranes-from-flow-enhancement-to-permeability.   

   Meng, Z., Casanova, S., Mohamed, H., Kapil, N., Xiao, X., Zhang, Y., Coppens, M. O., and Mattia, D.,  2020.   Polymer nanotube membranes synthesized via liquid deposition in anodic alumina.    Colloids and Interface Science Communications, 39.   Available from: https://researchportal.bath.ac.uk/en/publications/polymer-nanotube-membranes-synthesized-via-liquid-deposition-in-a.
DOI: 10.15125/bath-00662
title: Dataset for Charge-driven interfacial gelation of cellulose nanofibrils across the water/oil interface

description: The Dataset for Charge-driven interfacial gelation of cellulose nanofibrils across the water/oil interface contains data, in the form of Excel files, for the figures shown in the associated manuscript and the supplementary information. Each Excel file is specific for a set of data acquired utilising the same protocol.

In the Excel file named "Data_rheology_Fig2_3_S4_S5", the rheological data presented in Figures 2 and 3 of the manuscript and Figures S4 and S5 from the supplementary information are shown. The data are subdivided in different spreadsheets in according to the concentration of oxidised cellulose nanofibrils (OCNF) and ionic strength employed (NaCl concentration in mM), as specified at the top of each spreadsheet.

In the Excel file named "Data_rheology_Fig4", the rheological data presented in Figure 4 are shown. For all the rheological data, parameters as Gi* (N/m), tani(d) (-), Gi' (N/m) and Gi'' (N/m) are given as function of time (h) or strain amplitude (%) as shown in the relative figures.

In the Excel file named "Data_surface tension_Fig_S1", the surface tension measured at the oil-air interface (gamma, mN/m) as a function of Oleylamine (OA) concentration (mM) is given as illustrated in Figure S1 from the supplementary material.

Specification of the materials and methods employed throughout the data collection are available in the associated manuscript.
description: A detailed description of methodologies and materials used in this study are presented in the main manuscript under the subsection "Materials and methods".
description: A detailed description of equipments used in this study are presented in the main manuscript under the subsection "Materials and methods".
description: Further relevant documentation may be found in the following resources.

   Calabrese, V., da Silva, M. A., Schmitt, J., Hossain, K. M. Z., Scott, J. L., and Edler, K. J.,  2020.   Charge-driven interfacial gelation of cellulose nanofibrils across the water/oil interface.    Soft Matter, 16(2), 357-365.  Available from: https://doi.org/10.1039/c9sm01551e.
DOI: 10.15125/bath-00723
title: Dataset for the day-to-day reliability of peak fat oxidation and FATMAX

description: The dataset includes demographic data of the participants (n=115) and data from the three trials they participated in. Types of data that were collected during the trials are as follows - Trial A and Trial B followed identical protocols that involved anthropometric measurements, resting metabolic rate, a resting venous blood sample and the completion of a graded exercise test to determine PFO and FATMAX by indirect calorimetry. At Trial C, body composition was assessed (via a dual energy x-ray absorptiometry scan) and optional adipose tissue and/or skeletal muscle biopsies were obtained. All trials were completed in an overnight fasted-state.
description: Please see attached readme file.
DOI: 10.13145/bacdive2139.20240510.9
title: Campylobacter canadensis Inglis et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2140.20240510.9
title: Campylobacter cuniculorum Zanoni et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00729
title: Datset for "Resting skeletal muscle ATGL and CPT1B are associated with peak fat oxidation rates in men and women but do not explain observed sex differences"

description: The dataset includes demographic data of the participants who opted for adipose tissue and/or skeletal muscle biopsies (n=36) recruited as part of a larger study (n=115). Additionally, data from the three trials they participated in are included. The types of data that were collected during the trials are as follows - Trial A and Trial B followed identical protocols that involved anthropometric measurements, resting metabolic rate, a resting venous blood sample (to look at various plasma metabolite and hormone concentrations) and the completion of a graded exercise test to determine PFO and FATMAX by indirect calorimetry. At Trial C, body composition was assessed (via a dual energy x-ray absorptiometry scan) and optional adipose tissue and/or skeletal muscle biopsies were obtained. The adipose tissue and muscle biopsy data revolves around the content of several key proteins involved in fat metabolism in adipose tissue and skeletal muscle that may regulated fat use during exercise. All trials were completed in an overnight fasted-state.
DOI: 10.15125/bath-00731
title: Supplementary Dataset for Thesis: Bridging the Gap in Sustainable Continuous Chemicals Manufacture: Integrating Upstream Synthesis and Downstream Crystallisation - Chapter "Thermochromics"

description: The dataset includes the videos recorded for hot-stage microscopy measurements of cocrystal systems: 4-bromo-2-methylaniline:3,5-dinitrobenzoic acid (4Br2MA:35DNBA) and 4-iodo-2-methylaniline:3,5-dinitrobenzoic acid (4I2MA:35DNBA) isolated from slow evaporation and antisolvent crystallisation (batch and flow) experiments which is discussed in the Thesis Chapter.  

The video demonstrates the co-crystals systems colour changing properties and phase transition behaviour in response to temperature as well as the co-crystal melting points.

TC1.8 and Cc4 concern 4I2MA:35DNBA cocrystals and TC3.1, TC3.4, TC4.1 TC4.2, TC4.3 and TC4.4 correspond to 4Br2MA:35DNBA
description: Real-time analysis of phase transitions was conducted using a Mettler Toledo FP82 hot stage equipped with a Leica DM1000 microscope. A small amount of sample was placed onto a glass slide and transferred to the hot stage chamber. The sample was then subjected to a temperature program using the FP90 Central Processor. The microscope was equipped with an Infinity 2 camera to record any changes in real time. The Studio86Designs software was used capture the video. Playback of the videos was carried out using Studio Player.

In a typical experiment, a sample is heated at 5 C per min from a start temperature of 35 C until the sample has visibly melted. The video would be logged and played back to observe any visible changes in colour; a loss of crystallinity; solvent precipitation or a melting point over a specific temperature range. 

In samples subjected to water, 20 uL deionised water was added to the sample on the glass slide before being subjected to hot stage microscopy.
description: Playback software capable of reading avi. files - e.g. VLC media player
DOI: 10.13145/bacdive2141.20240510.9
title: Campylobacter volucris Debruyne et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00726
title: Dataset for "Influence of MOVPE environment on the selective area thermal etching of GaN nanohole arrays"

description: This dataset contains scanning electron microscopy (SEM) images of various selective area thermal etching (SATE) experiments. SiN circular nano-opening are created via Displacement Talbot Lithography and Inductively coupled plasma dry etching.  Then thermal etching is performed for various conditions within a metal organic vapour phase epitaxy growth reactor to create highly organized GaN nanoholes.
description: Secondary electron images were captured using a Hitachi S-4300 scanning electron microscope (SEM). An accelerating voltage of 5 kV was used to collect the images
description: The (11-22) GaN layer used for SATE was grown on m-plane sapphire using our high temperature AlN buffer technique by metal organic chemical vapor deposition (MOCVD). The substrate is initially subjected to thermal cleaning in flowing H2, and an atomically flat AlN layer with a thickness of 220 nm is then grown at 1170 °C, followed by the growth of a single GaN with a thickness of 1.3 μm at 1100 °C. 

SiNx mask were fabricated on 2-inch c-plane GaN and (11-22) semi-polar GaN template. 30 nm SiNx was first deposited by Plasma Enhanced Chemical Vapor Deposition (PECVD). A ~ 270 nm bottom antireflective coating (BARC) (Wide 30W – Brewer Science) layer and a ~ 360 nm high-contrast positive resist (Dow® Ultra-i 123 diluted with Dow® EC11 solvent) were spin-coated at 3000 rpm. Circular openings were defined in the resist via Displacement Talbot Lithography (PhableR 100, Eulitha) using a coherent 375 nm light source, an energy density of 1 mW.cm-2 and a gap of 150 μm. An integration time comprised between 210 and 270 sec and a Talbot length of 8.81 μm was employed for the 1.5 μm pitch amplitude mask with 800 nm diameter circular opening while an integration time of 60 sec and a Talbot length of 750 nm was employed for the 500 nm pitch phase mask with 300 nm diameter circular opening. After a post-bake at 120°C for 1 min 30 sec, the resist was developed in MF-CD-26 for 90 sec. The circular openings were then transferred into the BARC and SiNx layers via an inductively coupled plasma dry etch system (Oxford Instruments System 100 Cobra) with the following parameters: a CHF3 chemistry of 25 sccm, a temperature set to 20 °C, a pressure of 8 mTorr, 50 RF power and 300 W ICP source power. Finally, the wafer was cleaned in a piranha solution (3:1) to remove the resist and BARC, an oxygen plasma to remove any residue and deep in BOE 100:1 for 10 sec. 

SATE was carried out in a 1 x 2” horizontal Aixtron MOVPE reactor.
DOI: 10.15125/bath-00734
title: Dataset for "Robotic microscopy for everyone: the OpenFlexure Microscope"

description: This dataset contains microscopy images collected to demonstrate imaging capabilities of the OpenFlexure Microscope. Images for bright-field transmission and reflection, polarisation contrast, and fluorescence imaging are provided. A set of images obtained from a large tile scan are provided, along with the Microsoft Image Composite Editor file used for tiling.
description: Images were collected using the OpenFlexure Microscope as documented in the associated mansuscript.
description: Images are in JPEG format. The .spj file is a project file for use with Microsoft Image Composite Editor v2.0 (https://www.microsoft.com/en-us/research/product/computational-photography-applications/image-composite-editor/).

Python scripts are written for Python v3.6+ and require non-standard libraries matplotlib, Numpy, opencv-python, picamera, PIL, pytest, scipy, and scikit-image, all of which are available from the Python Package Index (https://pypi.org/).

The analysis script `run_analysis.sh` requires a global installation of the Python library micat (https://gitlab.com/bath_open_instrumentation_group/micat). It may be executed directly by a UNIX-like shell, but the command invocation it contains may be used on other platforms.
description: Additional documentation is provided within the ZIP file.
description: Further relevant documentation may be found in the following resources.

   Collins, J. T., Knapper, J., Stirling, J., Mduda, J., Mkindi, C., Mayagaya, V., Mwakajinga, G. A., Nyakyi, P. T., Sanga, V. L., Carbery, D., White, L., Dale, S., Jieh Lim, Z., Baumberg, J. J., Cicuta, P., McDermott, S., Vodenicharski, B., and Bowman, R.,  2020.   Robotic microscopy for everyone: the OpenFlexure microscope.    Biomedical Optics Express, 11(5), 2447.  Available from: https://doi.org/10.1364/boe.385729.
DOI: 10.15125/bath-00675
title: Dataset and figures for "Enhancing the Photo-corrosion Resistance of ZnO Nanowire Photocatalysts"

description: Zinc oxide (ZnO) displays superior properties as a photocatalyst for water treatment compared to widely used TiO2. More widespread application of ZnO, though, is hampered by its low stability and high photo-corrosion in aqueous environments, with the latter further enhanced under UV irradiation. The paper associated with this dataset, "Enhancing the Photo-corrosion Resistance of ZnO Nanowire Photocatalysts", shows for the first time that oxygen plasma post-treatment significantly enhances the photo-corrosion resistance of ZnO nanowire films in water under UV irradiation, while also leading to a 46% and 13% higher degradation of a model pollutant, phenol, compared to the as-produced and thermally annealed films, respectively, for the same irradiation time. This dataset contains the photodegradation and phenol calibration data underpinning these results, alongside measurements of Zn concentration in the solution after photocatalysis, X-ray diffraction data, hydrodynamics calculations, and Transmission and Scanning Electron Microscopy (TEM/SEM) images.
description: All data collection methods and analytical steps are fully described in the associated manuscript.
description: All instrumentation details are fully described in the associated manuscript.
description: The spreadsheet contains the following tabs:

- X-ray diffraction data for Figure 2 in the paper;*
- data for photocatalytic degradation of ZnO_F and ZnO_W in Figures 4 and 6 in the paper, respectively;*
- reactor calculations;
- calibration data for phenol;*
- attenuation factor calculations;
- data and calculations for hydrodynamic values contained in paper;*
- photodegradation data for Figure 7 in the paper;*
- Zn concentration calculations.

Data marked with an asterisk can also be found in CSV format in the accompanying zip file.
description: Further relevant documentation may be found in the following resources.

   Taylor, C. M., Ramirez-Canon, A., Wenk, J., and Mattia, D.,  2019.   Enhancing the photo-corrosion resistance of ZnO nanowire photocatalysts.    Journal of Hazardous Materials, 378.   Available from: https://researchportal.bath.ac.uk/en/publications/enhancing-the-photo-corrosion-resistance-of-zno-nanowire-photocat.
DOI: 10.15125/bath-00737
title: Dataset for "The OpenFlexure Block Stage: Sub-100 nm fibre alignment with a monolithic plastic flexure stage"

description: Data archive for "The OpenFlexure Block Stage: Sub-100 nm fibre alignment with a monolithic plastic flexure stage" by Qingxin Meng, Kerrianne Harrington, Julian Stirling, and Richard Bowman. This zip archive contains the following resources:

  - The data collection scripts used to characterise the mechanical performance of the OpenFlexure Block Stage.
  - The raw data generated by these scripts in hdf5 format.
  - The analysis scripts (iPython notebooks) used to analyse this data.
  - PDFs of all figures used in the paper as generated by the analysis script and a number of supplementary figures generated by the script. See comments in the scripts for more details on the figures.
  - Design files for the modified OpenFlexure Block Stages that were needed for mechanical testing. The custom attaching hardware, and a custom laser autocollimator used to measure the tilt of the stage. The only design files not included are those for the OpenFlexure Block Stage itself as this is an active project and the design and all history can be found in the project's source code repository: https://gitlab.com/openflexure/openflexure-block-stage
description: Full details of the methodology used may be found in the README files accompanying the data within the zip file.
DOI: 10.15125/bath-00676
title: Dataset for "Singlet oxygen generation by nanoporous silicon: photoluminescence dynamics in magnetic field"

description: The dataset contains raw measurements of low temperature magneto-photoluminescence spectra for porous silicon samples exposed to different levels of adsorbed oxygen. The data is structured in pairs of wavelength (nm) and photon counts, which were recorded for 1s or 10s acquisition time and constant temperature of 1.5K
description: Details of the data collection method can be found in the associated publication.
description: Files contain raw experimental data for Figure 4.  Format: pairs of wavelength (nm), photon counts. 

Data for Figures 8 and 10 is derived directly from the data for Figure 4. All other figures contain schematic diagrams or results of calculations using the model which is the main topic of the publication and is described in full there, including values of input parameters.
description: Further relevant documentation may be found in the following resources.

   Amonkosolpan, J., Aliev, G. N., Wolverson, D., Snow, P. A., and Davies, J. J.,  2014.   Magnetic field dependence of singlet oxygen generation by nanoporous silicon.    Nanoscale Research Letters, 9(1).  Available from: https://doi.org/10.1186/1556-276x-9-342.
DOI: 10.15125/bath-00738
title: Dataset for "Insights into the piezoceramic electromechanical impedance response for monitoring cement mortars during water saturation curing"

description: Lead Zirconate Titanate (PZT) based electromechanical impedance (EMI) sensors were used to monitor the effect of water saturation curing on cementitious mortar mixes with different water to cement ratios (w/c), during the first 28 days of curing under water. This dataset contains the impedance signature measurements for nine samples which represent three different mixes monitored from the 2nd to 28th day of curing. The dataset also includes the compressive and flexural strengths at five points during the curing process.
description: For ‘Analysis PZT_EMI Data.xlsx’, A 2 V voltage amplitude was used to actuate the PZT sensors, by a Newtons4th PSM 3750 frequency analyzer (Newtons4th Ltd., Leicester, UK) interfaced with an impedance analyzer. The impedance analyzer and the PZT sensors were connected through 50 Ω coaxial cables; specifically, the cables connected to the impedance analyzer at one end and to the PZT soldered wires at the other.

For ‘Flexural and compressive.xlsx’, A 100 kN Instron static testing frame was used for both the flexural and compressive stress measurements.
description: The spreadsheets are in MS Excel format.
description: The dataset is composed of two Excel files.

‘Analysis PZT_EMI Data.xlsx’ is composed of nine separate sheets. These sheets are named as Ci-j, in which i is the mortar mix number, and j is the sample number. The values of i and j range from 1 to 3. Each sheet contains the impedance signature measurements for each sample from the age of 2 days till the age of 28 days. The impedance signature was collected by using a Newtons4th PSM 3750 frequency analyzer (Newtons4th Ltd., Leicester, UK) interfaced with an impedance analyzer. One thousand steps were collected per measurement as mentioned in the methodology in the associated paper. The columns of each sheet show Step, Frequency (Hz), Z Real (ohms), Z Quadrature (ohms), Z Magnitude (ohms), Z Phase (°).

‘Flexural and compressive.xlsx’ contains the average flexural and the compressive stresses for the different mixes at the ages of 3, 7, 14, 21, and 28 days. Sheet 1, which is named ‘Compressive strength’, contains the compressive strength data, and sheet 2, named ‘Flexural strength’, contains the Flexural strength data.
DOI: 10.13145/bacdive2223.20240510.9
title: Sulfurospirillum deleyianum Schumacher et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.