cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4892594.v1
title: The neglected effects of Europeanization in the member states – policy-making in directly EU-influenced and sovereign domains

description: This article finds that the transformative power of deepening European integration on member states’ domestic policy-making processes is stronger than previously assumed. Moving beyond analysis of directly European Union-influenced domestic legislation, the article instead focuses on the indirect consequences that emerge from shifting policy competencies between levels of the European project. The main argument contends that as policy competencies move from the national to the European level, domestic policy-makers gain capacity to reallocate attention. The theoretical framework for this claim combines literature on Europeanization and agenda-setting theories to an argument of European integration’s influence on domestic policy-making processes. Empirical findings, examining 35 years of deepening European integration, suggest that patterns of policy-making for the sovereign and directly European Union-influenced domestic agenda shares assimilate as European integration progresses.
DOI: 10.6084/m9.figshare.4892537
title: Ovule damage by artificial oviposition treatment

description: <b>Description</b><br>This dataset contains processed data for number of infertile white seeds that result from damaged ovules during nusery pollinator oviposition in response to the artificial oviposition treatment in our flower manipulation experiment using <i>Yucca glauca</i>. Refer to manuscript for details of the study system, study site, and methods. <br><br><b>Format</b><br>The file is in .csv format. Each row contains data for a fruit.<br><br><b><b>Description of column headers</b><br>num</b> - Serial number of air-dried selected fruit developed from experimental flowers from the flower manipulation experiment.<br><b>totwhite</b> - Total white (infertile) ovules. Ovules damaged during oviposition remain in fruits as infertile white seeds.<br><b>totblack</b> - Total black (fertile) seeds. Fertilized ovules that were not damaged during oviposition are black in color.<br><b>tot</b> - Total seeds from the fruit (sum of totwhite and totblack)<br><b>len</b> - Length of fruit (mm) from the base to the tip of the remnant style (an index of fruit size)<br><b>dia</b> - Diameter of fruit (mm) at the widest point.<br><b>T</b> - The inflorescence treatment assigned to the inflorescence from which fruit was collected. For details of treatments see description of column <b>context</b> in dataset titled "Flower manipulation experiment with <i>Yucca glauca</i>" in this collection. Only fruits from inflorescences without basal fruits were used.<br><b>ovi</b> - The oviposition treatment assigned to the inflorescence from which fruit was collected. For details of treatments see description of column <b>ovi</b> in dataset titled "Flower manipulation experiment with <i>Yucca glauca</i>" in this collection. Only fruits with no and high oviposition treatment were used.<br><b><br></b>
DOI: 10.6084/m9.figshare.4892537.v1
title: Ovule damage by artificial oviposition treatment

description: <b>Description</b><br>This dataset contains processed data for number of infertile white seeds that result from damaged ovules during nusery pollinator oviposition in response to the artificial oviposition treatment in our flower manipulation experiment using <i>Yucca glauca</i>. Refer to manuscript for details of the study system, study site, and methods. <br><br><b>Format</b><br>The file is in .csv format. Each row contains data for a fruit.<br><br><b><b>Description of column headers</b><br>num</b> - Serial number of air-dried selected fruit developed from experimental flowers from the flower manipulation experiment.<br><b>totwhite</b> - Total white (infertile) ovules. Ovules damaged during oviposition remain in fruits as infertile white seeds.<br><b>totblack</b> - Total black (fertile) seeds. Fertilized ovules that were not damaged during oviposition are black in color.<br><b>tot</b> - Total seeds from the fruit (sum of totwhite and totblack)<br><b>len</b> - Length of fruit (mm) from the base to the tip of the remnant style (an index of fruit size)<br><b>dia</b> - Diameter of fruit (mm) at the widest point.<br><b>T</b> - The inflorescence treatment assigned to the inflorescence from which fruit was collected. For details of treatments see description of column <b>context</b> in dataset titled "Flower manipulation experiment with <i>Yucca glauca</i>" in this collection. Only fruits from inflorescences without basal fruits were used.<br><b>ovi</b> - The oviposition treatment assigned to the inflorescence from which fruit was collected. For details of treatments see description of column <b>ovi</b> in dataset titled "Flower manipulation experiment with <i>Yucca glauca</i>" in this collection. Only fruits with no and high oviposition treatment were used.<br><b><br></b>
DOI: 10.6084/m9.figshare.4892525
title: Flower retention in a naturally-pollinated Yucca glauca population

description: <b>Description:</b><br>This dataset contains processed data for positions of flowers on naturally-pollinated <i>Y. glauca</i> inflorescences and whether or not the flowers were retained (matured). Refer to manuscript for details of the study system, study site, and methods. <br><br><b>Format</b><br>The file is in .csv format. Each row contains data for a flower on an inflorescence.<br><br><b>Description of column headers</b><br><b>clump</b> - ID of the visually identifiable <i>Y. glauca</i> clump that the inflorescence belonged to.<br><b>infl</b> - ID of the inflorescence in the patch.<br><b>ht</b> - Height (cm) of the inflorescence from the point of origin at the base of the rosette to the tip.<br><b>basaldia </b>- Basal diamater (mm) of the inflorescence's rosette (an index of rosette size) measured below the lowest crown of green leaves. <br><b>fruits</b> - Number of fruits matured on the inflorescence <br><b>branched</b> - Whether the inflorescence is branched or not (binary variable) <i>Y. glauca</i> inflorescences are usually unbranched, in some cases, some amount of branching exists.<br><b>buds</b> - The total number of buds/flowers on the inflorescence<br><b>fl</b> - Position of flower (also serves as unique ID within an inflorescence), where 1 is the first flower from the bottom of the inflorescence.<br><b>fr</b> - Whether the flower (fl) was retained (matured) or not (binary variable).<br><b>scaled</b> - The scaled position of flower on inflorescence. Calculated by dividing the flower position by <b>buds</b>. For an inflorescence the lowest flower position is above 0 and the highest flower position is 1.<br><b>frbelow</b> - The number of fruits below the flower with position <b>fr</b><br><b>pos</b> - The position of flowers categorized into bottom third (B), middle third (M), and top third (T) flowers. Flowers with scaled positions less than 1/3 were classified as B, greater than 2/3 were classified as T, and the remaining flowers were classified as M.<b><br><br></b> <br>
DOI: 10.6084/m9.figshare.4892525.v1
title: Flower retention in a naturally-pollinated Yucca glauca population

description: <b>Description:</b><br>This dataset contains processed data for positions of flowers on naturally-pollinated <i>Y. glauca</i> inflorescences and whether or not the flowers were retained (matured). Refer to manuscript for details of the study system, study site, and methods. <br><br><b>Format</b><br>The file is in .csv format. Each row contains data for a flower on an inflorescence.<br><br><b>Description of column headers</b><br><b>clump</b> - ID of the visually identifiable <i>Y. glauca</i> clump that the inflorescence belonged to.<br><b>infl</b> - ID of the inflorescence in the patch.<br><b>ht</b> - Height (cm) of the inflorescence from the point of origin at the base of the rosette to the tip.<br><b>basaldia </b>- Basal diamater (mm) of the inflorescence's rosette (an index of rosette size) measured below the lowest crown of green leaves. <br><b>fruits</b> - Number of fruits matured on the inflorescence <br><b>branched</b> - Whether the inflorescence is branched or not (binary variable) <i>Y. glauca</i> inflorescences are usually unbranched, in some cases, some amount of branching exists.<br><b>buds</b> - The total number of buds/flowers on the inflorescence<br><b>fl</b> - Position of flower (also serves as unique ID within an inflorescence), where 1 is the first flower from the bottom of the inflorescence.<br><b>fr</b> - Whether the flower (fl) was retained (matured) or not (binary variable).<br><b>scaled</b> - The scaled position of flower on inflorescence. Calculated by dividing the flower position by <b>buds</b>. For an inflorescence the lowest flower position is above 0 and the highest flower position is 1.<br><b>frbelow</b> - The number of fruits below the flower with position <b>fr</b><br><b>pos</b> - The position of flowers categorized into bottom third (B), middle third (M), and top third (T) flowers. Flowers with scaled positions less than 1/3 were classified as B, greater than 2/3 were classified as T, and the remaining flowers were classified as M.<b><br><br></b> <br>
DOI: 10.6084/m9.figshare.4892447
title: Supplementary information for the paper "On the long-range dependence properties of annual precipitation using a global network of instrumental measurements"

description: Please see the readme file
DOI: 10.6084/m9.figshare.4892447.v1
title: Supplementary information for the paper "On the long-range dependence properties of annual precipitation using a global network of instrumental measurements"

description: Please see the readme file
DOI: 10.6084/m9.figshare.4892414
title: wilson_brekke_1994_horizontal.pdf

description: PDF Horizontal version of Wilson & Brekke (1994) figure 1
DOI: 10.6084/m9.figshare.4892414.v2
title: wilson_brekke_1994_horizontal.pdf

description: PDF Horizontal version of Wilson & Brekke (1994) figure 1
DOI: 10.6084/m9.figshare.4892360
title: OPTIMIZATION OF DESTINATIONS AND PATHS FOR QUADCOPTER DELIVERY OF AMAZON PARCELS

description: The aim of this project is to optimize a package delivery quadcopter route in a heavily-populated city. Current limitations on using quadcopters for delivering packages prevent one quadcopter from carrying more than one package in one trip. The research is motivated by an interest in investigating the economic benefits of a quadcopter carrying more than one package at a time, enabling visits to multiple destinations before returning to a base station.<br> This problem comprises two components: a path optimization to find the distance between destinations, and a destination optimization to find the optimal tour that passes through all destinations. The standard path optimization was solved using a gradient-based optimizer (MATLAB function fmincon), and a genetic algorithm was used to solve the destination optimization problem. Constraints added to the destination optimization problem, including the total weight of packages carried by a single quadcopter and the total distance of a single subtour, help make the model developed in this problem more realistic.
DOI: 10.6084/m9.figshare.4892360.v2
title: OPTIMIZATION OF DESTINATIONS AND PATHS FOR QUADCOPTER DELIVERY OF AMAZON PARCELS_Code.zip

description: The aim of this project is to optimize a package delivery quadcopter route in a heavily-populated city. Current limitations on using quadcopters for delivering packages prevent one quadcopter from carrying more than one package in one trip. The research is motivated by an interest in investigating the economic benefits of a quadcopter carrying more than one package at a time, enabling visits to multiple destinations before returning to a base station.<br> This problem comprises two components: a path optimization to find the distance between destinations, and a destination optimization to find the optimal tour that passes through all destinations. The standard path optimization was solved using a gradient-based optimizer (MATLAB function fmincon), and a genetic algorithm was used to solve the destination optimization problem. Constraints added to the destination optimization problem, including the total weight of packages carried by a single quadcopter and the total distance of a single subtour, help make the model developed in this problem more realistic.
DOI: 10.6084/m9.figshare.4892195
title: Recent advances in avian palaeobiology in New Zealand with implications for understanding New Zealand’s geological, climatic and evolutionary histories

description: New Zealand, long recognised as a land where birds dominate the terrestrial vertebrate biota, lacked an informative fossil record for the non-marine pre-Pleistocene avifauna until the twenty-first century. Here we review recent research that alters the known diversity of the fossil Paleogene–Neogene birds and our understanding of the origin of New Zealand’s recent or modern biota. Since 2010, there has been a 50% increase in the number of described fossil bird species (now 45) for the pre-Quaternary period. Many represent higher taxa that are new or listed for New Zealand for the first time, including 12 genera (35 total), nine family-level taxa (18 total), and seven ordinal taxa. We also review recent multidisciplinary research integrating DNA and morphological analyses affecting the taxonomic diversity of the Quaternary avifauna and present revised diversity metrics. The Holocene avifauna contained 217 indigenous breeding species (67% endemic) of which 54 (25%) are extinct.
DOI: 10.6084/m9.figshare.4892195.v1
title: Recent advances in avian palaeobiology in New Zealand with implications for understanding New Zealand’s geological, climatic and evolutionary histories

description: New Zealand, long recognised as a land where birds dominate the terrestrial vertebrate biota, lacked an informative fossil record for the non-marine pre-Pleistocene avifauna until the twenty-first century. Here we review recent research that alters the known diversity of the fossil Paleogene–Neogene birds and our understanding of the origin of New Zealand’s recent or modern biota. Since 2010, there has been a 50% increase in the number of described fossil bird species (now 45) for the pre-Quaternary period. Many represent higher taxa that are new or listed for New Zealand for the first time, including 12 genera (35 total), nine family-level taxa (18 total), and seven ordinal taxa. We also review recent multidisciplinary research integrating DNA and morphological analyses affecting the taxonomic diversity of the Quaternary avifauna and present revised diversity metrics. The Holocene avifauna contained 217 indigenous breeding species (67% endemic) of which 54 (25%) are extinct.
DOI: 10.6084/m9.figshare.4892192
title: Iodine biofortification of spinach by soil fertigation with additional application of humic and fulvic acids

description: The aim of this research was to determine the interaction between fertigation with KIO<sub>3</sub> and pre-sowing application of exogenous humic and fulvic acids (used in the form of the commercial concentrate Humistar, HU) on yield, iodine biofortification and chemical composition of spinach cv. ‘Olbrzym zimowy’. The plants were cultivated in a pot experiment with the following treatments: control, pre-sowing HU application at doses of 0.0125, 0.05 and 0.2 cm<sup>3</sup> HU dm<sup>−3</sup> of soil, KIO<sub>3</sub> fertigation and KIO<sub>3</sub> fertigation with pre-sowing HU application at doses of 0.0125, 0.05 and 0.2 cm<sup>3</sup> HU dm<sup>−3</sup> of soil, fertigation at a dose of 0.0004% I. The use of HU and fertigation with KIO<sub>3</sub> caused an increase of iodine content and iodine transfer factor (TF) from the soil to the plants; with the highest extent in the pot treated with KIO<sub>3</sub> + 0.2 cm<sup>3</sup> HU dm<sup>−3</sup> of soil.
DOI: 10.6084/m9.figshare.4892177
title: Minimal data set .xls

description: Origial minimal data set
DOI: 10.6084/m9.figshare.4892177.v2
title: Minimal data set .xls

description: Origial minimal data set
DOI: 10.6084/m9.figshare.4892162
title: Code to plot the path

description: Code to plot the final optimal angles
DOI: 10.6084/m9.figshare.4892156
title: Gaussian function

description: Function used to calculate value of the Gaussian at the distances.
DOI: 10.6084/m9.figshare.4892177.v1
title: Minimal data set for PONE-D-16-47484.xls

description: Origial minimal data set for PONE-D-16-47484
DOI: 10.6084/m9.figshare.4892153
title: Reward Calculating Function

description: Reward function to calculate reward of path
DOI: 10.6084/m9.figshare.4892156.v1
title: Gaussian function

description: Function used to calculate value of the Gaussian at the distances.
DOI: 10.6084/m9.figshare.4892162.v1
title: Code to plot the path

description: Code to plot the final optimal angles
DOI: 10.6084/m9.figshare.4892153.v1
title: Reward Calculating Function

description: Reward function to calculate reward of path
DOI: 10.6084/m9.figshare.4892129
title: hSSB1 oligomer data-driven structural model (lowest energy)

description: data-driven structural model of hSSB1 oligomer (lowest energy)<br><br>if used please cite:<br>------------------------<br>Christine Touma, Mark N. Adams, Nicholas W. Ashton, Michael Mizzi, Serene El-Kamand, Derek J. Richard, Liza Cubeddu, and Roland Gamsjaeger (2017); A data-driven structural model of hSSB1 (NABP2/OBFC2B)<br>self-oligomerisation; Nucleic Acids Research; doi:10.1093/nar/gkx526
DOI: 10.6084/m9.figshare.4892114
title: Gradient-based and Gradient-free Optimization of a Naive Bus Route

description: Public transportation like trains, buses, and light-rail vehicles can transport more people than commuter cars while taking up minimal space on roadways. While public transportation systems are highly effective in areas with high population density in the United States, they are definitively underused. In order to increase the number of people using public transportation, public transportation must improve. One of the most common and cost-effective methods of public transit is the city bus. The time a bus takes to complete its route is heavily dependent on the amount of traffic in a given area and road signals. Researchers have applied optimization techniques to bus routes where most of these algorithms have focused on either graph based methods or genetic algorithms, since a bus route is discrete problem. We have developed two models. The first is a continuous model of a city block, which allows us to apply gradient-based methods of optimization to the bus route problem. The second being a discrete graph like the ones performed previously to compare results. This paper reports on how continuous and discrete models can find an optimal route that changes when different traffic conditions are present. The model is presented and shown to work in naive cases, through standard Manhattan square blocks. The results are shown to find the optimal path for a city bus traveling between two points within a city grid and a full path.<br>
DOI: 10.6084/m9.figshare.4892111
title: Data for Cristea et al (2017), JAMA Psychiatry

description: Data for Cristea IA, Gentili C, Cotet CD, Palomba D, Barbui C, Cuijpers P. Efficacy of Psychotherapies for Borderline Personality Disorder: A Systematic Review and Meta-analysis. JAMA Psychiatry. 2017;74(4):319-328. <br>
DOI: 10.6084/m9.figshare.4892114.v3
title: Gradient-based and Gradient-free Optimization of a Naive Bus Route

description: Public transportation like trains, buses, and light-rail vehicles can transport more people than commuter cars while taking up minimal space on roadways. While public transportation systems are highly effective in areas with high population density in the United States, they are definitively underused. In order to increase the number of people using public transportation, public transportation must improve. One of the most common and cost-effective methods of public transit is the city bus. The time a bus takes to complete its route is heavily dependent on the amount of traffic in a given area and road signals. Researchers have applied optimization techniques to bus routes where most of these algorithms have focused on either graph based methods or genetic algorithms, since a bus route is discrete problem. We have developed two models. The first is a continuous model of a city block, which allows us to apply gradient-based methods of optimization to the bus route problem. The second being a discrete graph like the ones performed previously to compare results. This paper reports on how continuous and discrete models can find an optimal route that changes when different traffic conditions are present. The model is presented and shown to work in naive cases, through standard Manhattan square blocks. The results are shown to find the optimal path for a city bus traveling between two points within a city grid and a full path.<br>
DOI: 10.6084/m9.figshare.4892099
title: State of Open Data Poster

description: Last year, Figshare released the results of its global survey of 2,000 researchers in a report that assesses the global landscape around open data and sharing practices. The report highlights the extent of awareness around open data, the incentives around its use, and perspectives researchers have about making their own research data open.<br><br><br>This poster will cover some of the highlights of the report including:<br><br><br>For the majority of respondents, open data is already a reality: Approximately three quarters of respondents have made their research data openly available at some point; a similar number are aware of data sets that are open to access, reuse, repurpose and redistribute.Researchers place value on the credit they receive for making data open:Nearly 70% of researchers value a data citation as much as an article citation. A further 10% value a data citation more than an article citation.Awareness of open data transcends age and career progression:Encouragingly, Principal Investigators (PIs) and Professors consistently responded similarly to PhD students and Post-doctoral fellows in their awareness of open data usage.Respondents admit to uncertainty and gaps in their knowledge and are hungry for more information, perhaps one set of critical factors that hold back progression in open data sharing.Researchers are uncertain of how to cite datasetsResearchers who have never made data openly available are considering doing so.Copies of the report will be available at the poster and all underlying data is openly available on figshare.<br>
DOI: 10.6084/m9.figshare.4892084
title: S2_Fig_Data

description: Data for S2 Fig. Contains desired and achieved results in CSV form for both masked and unmasked optimization.
DOI: 10.6084/m9.figshare.4892081
title: S1_Fig_Data

description: Data for S1 Fig. Contains 3 input voltages in CSV form. Input voltages were generated using the algorithm described in the paper.
DOI: 10.6084/m9.figshare.4892084.v1
title: S2_Fig_Data

description: Data for S2 Fig. Contains desired and achieved results in CSV form for both masked and unmasked optimization.
DOI: 10.6084/m9.figshare.4892075
title: Fig_6_Data_for_overview_schematic

description: Data for Fig. 6. Contains a series of optimization results, including the desired result, achieved result, and masked residual for 7 iterations. Also includes the mirror impulse response.
DOI: 10.6084/m9.figshare.4892078
title: Fig_7_Data_for_full_method

description: Data for Fig. 7. Contains a series of optimization results, including the desired result, achieved result, masked and unmasked residual, and voltage mask for 5 iterations.
DOI: 10.6084/m9.figshare.4892081.v1
title: S1_Fig_Data

description: Data for S1 Fig. Contains 3 input voltages in CSV form. Input voltages were generated using the algorithm described in the paper.
DOI: 10.6084/m9.figshare.4892066
title: Fig_4_Data_for_L_iteration

description: Data for Fig. 4. Contains impulse response, time-inverse impulse response, voltage mask, cropped and padded residual, cropped and full expected result, cropped desired result, initial input voltage, and correction voltages. Contains data for each panel in flow chart.