cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3hn6vm
title: Occurrence Download

description: A dataset containing 64335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((57.47991 51.18477,58.66856 51.26094,59.36864 60.9779,59.30845 61.32401,59.78067 64.88924,65.75814 67.38834,66.22831 67.70674,64.48128 69.41502,61.108 69.84845,60.2649 68.67399,59.82844 68.38031,58.77822 68.96517,57.92342 68.72829,57.20926 68.51906,55.221 68.48892,54.00671 68.02565,53.62162 68.33164,53.80162 68.6602,52.84594 68.75011,51.69045 68.48633,47.88642 67.40371,46.93256 66.82327,44.92205 67.30654,46.13641 67.79674,44.63004 68.53939,43.97792 67.16038,43.80674 66.18982,43.17071 66.41096,41.89079 66.33085,39.84738 65.61506,40.44603 64.76012,38.0841 64.77842,36.79146 64.95203,37.6099 63.81379,34.73627 64.74286,34.76707 65.07636,34.32607 65.38122,34.67638 65.74066,34.48289 66.08374,32.84037 66.58777,32.52396 66.9141,33.63558 66.83341,39.19814 66.12712,41.08719 67.30787,40.7233 67.7544,40.02215 67.97865,39.18803 68.17081,38.40728 68.33558,37.8213 68.59097,37.10135 68.84874,36.06021 69.1358,34.3682 69.26666,33.46704 69.40466,32.65226 69.58223,31.76249 69.82168,30.95347 69.62176,29.96136 69.40671,28.80391 68.86928,29.63199 67.34282,30.42352 63.51671,31.42722 62.76308,28.25803 60.81029,28.59312 60.38702,29.11253 60.16966,27.49315 58.22479,28.17685 56.20582,28.72137 55.98381,30.64313 55.67696,30.81966 55.32275,32.62698 53.47515,31.38998 52.9196,32.20975 52.07757,34.0025 52.22719,34.69002 51.18139,36.36318 50.28748,38.42584 49.99117,40.18754 49.28134,39.74789 48.59059,39.71063 47.82963,38.35254 47.61636,38.69777 47.15611,39.27136 47.01638,41.66607 45.97476,43.76286 45.97333,44.11666 45.73404,46.96665 44.77384,47.42268 45.25135,48.04831 45.73523,48.72548 45.68946,48.79601 46.0189,49.22101 46.29279,48.507 46.71965,48.68681 47.13174,46.50668 48.46124,47.35443 50.33329,48.88158 50.03488,49.07781 50.74476,51.3399 51.64382,56.9546 51.35882,57.47991 51.18477))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 64335 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038692-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyqu8m
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "Geometry POLYGON((32 -43,127 -43,127 28,32 28,32 -43))",
 "MediaType is Image",
 "TaxonKey is Fimbristylis"
 ]
}

 The dataset includes 350 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038752-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdzp9f
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leonurus cardiaca",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 234 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038755-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yx5vf2
title: Occurrence Download

description: A dataset containing 87163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia punctata"
 ]
}

 The dataset includes 87163 records from 513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038660-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhd62p
title: Occurrence Download

description: A dataset containing 2246096 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagomorpha"
 ]
}

 The dataset includes 2246096 records from 4835 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038704-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26992690
title: Additional file 1 of Exploring the Mediterranean tsunami research landscape: scientometric insights and future prospects

description: Additional file 1. A comprehensive list of scientific articles related to Mediterranean tsunamis indexed in Web of Science, which were utilized in the scientometric study of tsunamis in the Mediterranean.
DOI: 10.6084/m9.figshare.26992690.v1
title: Additional file 1 of Exploring the Mediterranean tsunami research landscape: scientometric insights and future prospects

description: Additional file 1. A comprehensive list of scientific articles related to Mediterranean tsunamis indexed in Web of Science, which were utilized in the scientometric study of tsunamis in the Mediterranean.
DOI: 10.6084/m9.figshare.26992705
title: Additional file 1 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 1: Table S1. Characteristics of rye inbred lines, D33, D39, and L318, chosen for experiments.
DOI: 10.6084/m9.figshare.26992705.v1
title: Additional file 1 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 1: Table S1. Characteristics of rye inbred lines, D33, D39, and L318, chosen for experiments.
DOI: 10.6084/m9.figshare.26992714
title: Additional file 4 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 4: Table S4. log2(fold-change)|values for metabolites in all 12 comparisons (LC-MS). LC-MS data processed.
DOI: 10.6084/m9.figshare.26992714.v1
title: Additional file 4 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 4: Table S4. log2(fold-change)|values for metabolites in all 12 comparisons (LC-MS). LC-MS data processed.
DOI: 10.6084/m9.figshare.26992717
title: Additional file 5 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 5: Table S5. RNA-seq results for all DEGs (only comparisons containing DEGs are listed below). List of all unique DEGs. KEGG-based*) functional classification of all unique Differentially Expressed Genes (DEGs).
DOI: 10.6084/m9.figshare.26992717.v1
title: Additional file 5 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 5: Table S5. RNA-seq results for all DEGs (only comparisons containing DEGs are listed below). List of all unique DEGs. KEGG-based*) functional classification of all unique Differentially Expressed Genes (DEGs).
DOI: 10.6084/m9.figshare.26992720
title: Additional file 6 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 6: Table S6. Common and unique DEGs for both types of interactions and both time points. Gene onthology analysis for group of common DEGs for both types of interactions and both time points. Gene onthology analysis for group of unique DEGs for CP 20hpt. Gene onthology analysis for group of unique DEGs for ICP 20hpt. Gene onthology analysis for group of unique DEGs for CP 36hpt. Gene onthology analysis for group of unique DEGs for ICP 36hpt.
DOI: 10.6084/m9.figshare.26992720.v1
title: Additional file 6 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 6: Table S6. Common and unique DEGs for both types of interactions and both time points. Gene onthology analysis for group of common DEGs for both types of interactions and both time points. Gene onthology analysis for group of unique DEGs for CP 20hpt. Gene onthology analysis for group of unique DEGs for ICP 20hpt. Gene onthology analysis for group of unique DEGs for CP 36hpt. Gene onthology analysis for group of unique DEGs for ICP 36hpt.
DOI: 10.6084/m9.figshare.26992723
title: Additional file 7 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 7: Table S7. Common and unique DEGs; different comparisons.
DOI: 10.6084/m9.figshare.26992726
title: Additional file 8 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 8: Table S8. The most strongly up- and down-regulated genes.
DOI: 10.6084/m9.figshare.26992723.v1
title: Additional file 7 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 7: Table S7. Common and unique DEGs; different comparisons.
DOI: 10.6084/m9.figshare.26992726.v1
title: Additional file 8 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 8: Table S8. The most strongly up- and down-regulated genes.
DOI: 10.6084/m9.figshare.26992729
title: Additional file 9 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 9: Table S9. DEGs common for three rye inbred lines.
DOI: 10.6084/m9.figshare.26992729.v1
title: Additional file 9 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 9: Table S9. DEGs common for three rye inbred lines.
DOI: 10.6084/m9.figshare.26992732
title: Additional file 10 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 10: Table S10. The complete joint-pathway enrichment of the DAMs and DEGs.
DOI: 10.6084/m9.figshare.26992732.v1
title: Additional file 10 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 10: Table S10. The complete joint-pathway enrichment of the DAMs and DEGs.
DOI: 10.6084/m9.figshare.26992735.v1
title: Additional file 11 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 11: Table S11. Nodes of the correlation network and their properties. Edges of the correlation network and their properties.
DOI: 10.6084/m9.figshare.26992735
title: Additional file 11 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 11: Table S11. Nodes of the correlation network and their properties. Edges of the correlation network and their properties.
DOI: 10.6084/m9.figshare.26992738
title: Additional file 12 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 12: Table S12. Common and unique DAMs selected on the basis of Venn Diagram.
DOI: 10.6084/m9.figshare.26992738.v1
title: Additional file 12 of Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels

description: Additional file 12: Table S12. Common and unique DAMs selected on the basis of Venn Diagram.
DOI: 10.6084/m9.figshare.26992789
title: Additional file 5 of Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures

description: Additional file 5: Table S1. Statistical outputs. Full statistical outputs for all analyses and figures.
DOI: 10.6084/m9.figshare.26992789.v1
title: Additional file 5 of Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures

description: Additional file 5: Table S1. Statistical outputs. Full statistical outputs for all analyses and figures.
DOI: 10.6084/m9.figshare.26992792
title: Additional file 6 of Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures

description: Additional file 6: Table S2. Metadata and trial information. Individual metadata information for all mice (sheet 1) as well as trial specific metadata information (sheet 2).
DOI: 10.6084/m9.figshare.26992792.v1
title: Additional file 6 of Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures

description: Additional file 6: Table S2. Metadata and trial information. Individual metadata information for all mice (sheet 1) as well as trial specific metadata information (sheet 2).
DOI: 10.6084/m9.figshare.26992807
title: Additional file 2 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 2. Table S1. Measured depths of seismic horizons shown in Figure 24 (main text).
DOI: 10.6084/m9.figshare.26992807.v1
title: Additional file 2 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 2. Table S1. Measured depths of seismic horizons shown in Figure 24 (main text).
DOI: 10.6084/m9.figshare.26992808
title: Navigating constraints, finding freedom: exploring asylum seekers’ access to urban arrival infrastructures

description: This paper explores asylum seekers’ experiences of urban arrival infrastructures, illustrating how these provide asylum seekers with opportunities for familiarization with the reception location and its inhabitants. Drawing on two qualitative case studies in Augsburg, Germany, three different subsets of arrival infrastructures emerged as relevant to familiarization; infrastructures for information, for language learning and for social connection. The analysis shows how asylum seekers are differentially positioned towards accessing informational, language-learning and social infrastructures due the intersection of spatial, institutional and personal constraints. Public and semi-public spaces proved to be indispensable to asylum seekers’ informational, language learning and social infrastructures. The paper concludes by highlighting the ambiguity and political nature of urban arrival infrastructures: While state-provided, formal infrastructures often undermined the process of familiarization and contributed to asylum seekers’ differential access to opportunities and resources, informal, citizen-provided infrastructures were crucial in supporting asylum seekers’ needs during the periods of uncertainty.
DOI: 10.6084/m9.figshare.26992808.v1
title: Navigating constraints, finding freedom: exploring asylum seekers’ access to urban arrival infrastructures

description: This paper explores asylum seekers’ experiences of urban arrival infrastructures, illustrating how these provide asylum seekers with opportunities for familiarization with the reception location and its inhabitants. Drawing on two qualitative case studies in Augsburg, Germany, three different subsets of arrival infrastructures emerged as relevant to familiarization; infrastructures for information, for language learning and for social connection. The analysis shows how asylum seekers are differentially positioned towards accessing informational, language-learning and social infrastructures due the intersection of spatial, institutional and personal constraints. Public and semi-public spaces proved to be indispensable to asylum seekers’ informational, language learning and social infrastructures. The paper concludes by highlighting the ambiguity and political nature of urban arrival infrastructures: While state-provided, formal infrastructures often undermined the process of familiarization and contributed to asylum seekers’ differential access to opportunities and resources, informal, citizen-provided infrastructures were crucial in supporting asylum seekers’ needs during the periods of uncertainty.
DOI: 10.6084/m9.figshare.26992810
title: Additional file 3 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 3. Table S2. Measured depths of seismic horizons and marine clays.
DOI: 10.6084/m9.figshare.26992810.v1
title: Additional file 3 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 3. Table S2. Measured depths of seismic horizons and marine clays.
DOI: 10.6084/m9.figshare.26992813
title: Additional file 4 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 4. Table S3. Measured uplift and inferred age along seismic horizons.
DOI: 10.6084/m9.figshare.26992813.v1
title: Additional file 4 of Shallow structure and late quaternary slip rate of the Osaka Bay fault, western Japan

description: Additional file 4. Table S3. Measured uplift and inferred age along seismic horizons.
DOI: 10.57745/8k1yob
title: rpg_complete_2022_d72.zip

description: :unav
DOI: 10.57745/lhcbrk
title: notice_RPG_complété_2022_v3.pdf

description: :unav
DOI: 10.57745/1o3asz
title: rpg_complete_2022_d85.zip

description: :unav
DOI: 10.57745/chbkai
title: rpg_complete_2022_d49.zip

description: :unav
DOI: 10.57745/wvsexs
title: rpg_complete_2022_d53.zip

description: :unav
DOI: 10.57745/z0o1gu
title: rpg_complete_2022_d44.zip

description: :unav
DOI: 10.6084/m9.figshare.26992822
title: Additional file 1 of A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora

description: Additional file 1: Table S1. Summary of sequence data for Theobroma cacao genotypes used in the draft assemblies for Theobroma cacao genotypes. Table S2. The length-weighted mean molecule length for Supernova genotype assemblies at different read depths estimated from linked reads. Table S3. Estimated k-mer based genome characteristics for Theobroma cacao genotypes Table S4. BUSCO completeness scores for each cacao meta-assembly. Table S5. Genome summary statistics for the T. cacao reference genomes, Matina and Criollo, and new meta-assemblies. Table S6. RNA samples pooled for genome annotation. Table S7. Primers used to clone TcCSE (SCA-6_Chr6v1_17513) and their cut sites. Table S8. Annotated MS2 fragmentation patterns from LC-MS/MS data collected during zoospore infection. Table S9. Genes in the top 1% of their respective PBS distributions that also overlap a differentially expressed gene. Table S10. Genes in the top 1% of their respective population branch statistic (PBS) distributions. Table S11. Orthogroups that are differentially expressed in response to P. palmivora challenge in both wild Theobroma spp. and Theobroma cacao. Table S12. Meta-data for the RNA-seq experiment. Table S13. Top 1000 genes from each genetic group in response to pathogen treatment, ranked by absolute log fold change (|LFC|). Table S14. Top 1000 genes from each genetic group in response tolerance/susceptibility phenotype, ranked by absolute log fold change (|LFC|). Table S15. Meta-data for metabolite extraction from the RNA-seq experimental tissues.
DOI: 10.6084/m9.figshare.26992822.v1
title: Additional file 1 of A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora

description: Additional file 1: Table S1. Summary of sequence data for Theobroma cacao genotypes used in the draft assemblies for Theobroma cacao genotypes. Table S2. The length-weighted mean molecule length for Supernova genotype assemblies at different read depths estimated from linked reads. Table S3. Estimated k-mer based genome characteristics for Theobroma cacao genotypes Table S4. BUSCO completeness scores for each cacao meta-assembly. Table S5. Genome summary statistics for the T. cacao reference genomes, Matina and Criollo, and new meta-assemblies. Table S6. RNA samples pooled for genome annotation. Table S7. Primers used to clone TcCSE (SCA-6_Chr6v1_17513) and their cut sites. Table S8. Annotated MS2 fragmentation patterns from LC-MS/MS data collected during zoospore infection. Table S9. Genes in the top 1% of their respective PBS distributions that also overlap a differentially expressed gene. Table S10. Genes in the top 1% of their respective population branch statistic (PBS) distributions. Table S11. Orthogroups that are differentially expressed in response to P. palmivora challenge in both wild Theobroma spp. and Theobroma cacao. Table S12. Meta-data for the RNA-seq experiment. Table S13. Top 1000 genes from each genetic group in response to pathogen treatment, ranked by absolute log fold change (|LFC|). Table S14. Top 1000 genes from each genetic group in response tolerance/susceptibility phenotype, ranked by absolute log fold change (|LFC|). Table S15. Meta-data for metabolite extraction from the RNA-seq experimental tissues.
DOI: 10.6084/m9.figshare.26992828
title: Additional file 1 of Exploring the role of ubiquitin regulatory X domain family proteins in cancers: bioinformatics insights, mechanisms, and implications for therapy

description: Additional file 1: Figure S1. Gene alteration in UBXDF in cancers. A UBXDF gene alterations in TCGA. B The OncoPrint with mutation spectrum and UBXDF gene alteration. Figure S2. A expression profile of cancer-noncancer tissues using TCGA individual cancer types data (noncancer tissue sample size &gt; =5). B Co-expression analysis between every two genes is presented. (Blue points indicate positive correlation, while red points indicate negative correlation.) C K-M curve of overall survival across cancer types and UBXDF members, p &lt;0.05. D Forest map shows the univariate cox regression results of UBXDF for OS. E UBXDF members protein expression in normal tissues. F UBXDF members protein expression in tumour tissues. Figure S3. Correlation analysis between UBXD–F expression and TME. A–D The association between UBXD–F expression and stromal score, tumour purity, ESTIMATE score and immune score in 33 TCGA cancer types. (Red points indicate positive correlation, while blue points indicate negative correlation). Table S1. Abbreviations and full names of nouns in the text. Table S2. A logFC & p value of the heatmap exhibiting the transcriptional level of the UBXDF in TCGA tumour types compared to adjacent normal tissues. B Co-expression network of UBXDF. C COX analysis between UBXDF and OS. D–G Correlation coefficient & p value of DNAss or RNAss matrix. H Correlation coefficient of CTRL and UBXDF. I Correlation coefficient of GDSC and UBXDF. Table S3. A Estimatescore for TCGA tumour samples.
DOI: 10.6084/m9.figshare.26992849
title: Additional file 4 of Distinct regulatory networks control toxin gene expression in elapid and viperid snakes

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26992852
title: Additional file 5 of Distinct regulatory networks control toxin gene expression in elapid and viperid snakes

description: Supplementary Material 5