cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24720240
title: Circulating markers of neutrophil activation and lung injury in pediatric pneumonia in low-resource settings

description: Diagnostic biomarkers for childhood pneumonia could guide management and improve antibiotic stewardship in low-resource settings where chest x-ray (CXR) is not always available. In this cross-sectional study, we measured chitinase 3-like protein 1 (CHI3L1), surfactant protein D (SP-D), lipocalin-2 (LCN2), and tissue inhibitor of metalloproteinases-1 (TIMP-1) in Ugandan children under the age of five hospitalized with acute lower respiratory tract infection. We determined the association between biomarker levels and primary end-point pneumonia, indicated by CXR consolidation. We included 89 children (median age 11 months, 39% female). Primary endpoint pneumonia was present in 22 (25%). Clinical signs were similar in children with and without CXR consolidation. Broad-spectrum antibiotics (ceftriaxone) were administered in 83 (93%). Levels of CHI3L1, SP-D, LCN2 and TIMP-1 were higher in patients with primary end-point pneumonia compared to patients with normal CXR or other infiltrates. All markers were moderately accurate predictors of primary end-point pneumonia, with area under receiver operator characteristic curves of 0.66-0.70 (<i>p</i>&lt;0.05 for all markers). The probability of CXR consolidation increased monotonically with the number of markers above cut-off. Among 28 patients (31%) in whom all four markers were below the cut-off, the likelihood ratio of CXR consolidation was 0.11 (95%CI 0.015 to 0.73). CHI3L1, SP-D, LCN2 and TIMP-1 were associated with CXR consolidation in children with clinical pneumonia in a low-resource setting. Combinations of quantitative biomarkers may be useful to safely withhold antibiotics in children with a low probability of bacterial infection.
DOI: 10.6084/m9.figshare.24720240.v1
title: Circulating markers of neutrophil activation and lung injury in pediatric pneumonia in low-resource settings

description: Diagnostic biomarkers for childhood pneumonia could guide management and improve antibiotic stewardship in low-resource settings where chest x-ray (CXR) is not always available. In this cross-sectional study, we measured chitinase 3-like protein 1 (CHI3L1), surfactant protein D (SP-D), lipocalin-2 (LCN2), and tissue inhibitor of metalloproteinases-1 (TIMP-1) in Ugandan children under the age of five hospitalized with acute lower respiratory tract infection. We determined the association between biomarker levels and primary end-point pneumonia, indicated by CXR consolidation. We included 89 children (median age 11 months, 39% female). Primary endpoint pneumonia was present in 22 (25%). Clinical signs were similar in children with and without CXR consolidation. Broad-spectrum antibiotics (ceftriaxone) were administered in 83 (93%). Levels of CHI3L1, SP-D, LCN2 and TIMP-1 were higher in patients with primary end-point pneumonia compared to patients with normal CXR or other infiltrates. All markers were moderately accurate predictors of primary end-point pneumonia, with area under receiver operator characteristic curves of 0.66-0.70 (<i>p</i>&lt;0.05 for all markers). The probability of CXR consolidation increased monotonically with the number of markers above cut-off. Among 28 patients (31%) in whom all four markers were below the cut-off, the likelihood ratio of CXR consolidation was 0.11 (95%CI 0.015 to 0.73). CHI3L1, SP-D, LCN2 and TIMP-1 were associated with CXR consolidation in children with clinical pneumonia in a low-resource setting. Combinations of quantitative biomarkers may be useful to safely withhold antibiotics in children with a low probability of bacterial infection.
DOI: 10.5281/zenodo.10237417
title: Wijchen midden IJzertijd / middle Iron Age # 2

description: Midden IJzertijd / middle Iron Age vondstcomplex 
Wijchen Abersland / Balgoijseweg gevonden 1986
Collectie AWN afdeling 16
www.awnregionijmegen.nl

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10237423
title: Decorative Plaster Molding

description: A section of decorative plaster molding recovered during the 2018 excavation of the mansion house at Eutaw Farm in Herring Run Park, Baltimore. Courtesy of the Herring Run Archaeology Project which has given permission for the model to be downloadable for non-commercial educational purposes.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10237424
title: Decorative Plaster Molding

description: A section of decorative plaster molding recovered during the 2018 excavation of the mansion house at Eutaw Farm in Herring Run Park, Baltimore. Courtesy of the Herring Run Archaeology Project which has given permission for the model to be downloadable for non-commercial educational purposes.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10237428
title: Kirkjubømúrurin: KV018

description: Sligin basalt steinur úr Kirkjubømúrinum, partur av steinasavninum hjá Tjóðsavninum.

*English:* Carved basalt stone from Kirkjubømúrinum (The Saint Magnus Cathedral), in storage at Tjóðsavnið.

Dimension: 59 x 45.5 x 24 cm.

Created by Petur Hansen, using Artec Eva scanner and Artec Studio 15.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10237430
title: Hacklett, Benebecula

description: Cup marked slab with a large incised circle surrounding many of the cups. The panel was recorded for ScRAP by the Uists Rock Art Team and modelled using photographs provided by Simon Davies.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10237421
title: Arcade machine "Gorodki"

description: Source: Objaverse 1.0 / Sketchfab
DOI: 10.17632/y88xdw2n97.1
title: Bot Sharing Experiment Dataset

description: The dataset of an online experiment involving simple networks of humans (624 participants in 152 networks) playing a resource-sharing game to which we sometimes add artificial agents. We recruited the participants from Amazon Mechanical Turk.
DOI: 10.17632/mx8pf5whk4.1
title: Summary of wind speed observation data along 1304 working face and intake and return air roadway

description: This is a data summary that includes two parts: data from the closed oxygen consumption experiments of the 1304 working face coal samples, and data observations of the airflow velocities along the intake and return airways of the 1304 working face.

The data from the closed oxygen consumption experiments of the 1304 working face coal samples were obtained by conducting sealed oxygen consumption tests. In order to determine the coal sample’s oxygen consumption rate at different oxygen concentrations, the coal sample was sealed in a container, and the air inside the container was circulated using an air pump to ensure sufficient contact between the coal sample and the air. As the coal sample continuously oxidized, the oxygen inside the container was consumed, and the volume fraction of oxygen inside the container was monitored and recorded in real-time. The oxygen consumption rate eventually reached a steady state. By analyzing the unique pattern of oxygen concentration changes during the coal-oxygen consumption process, the relationship between oxygen volume fraction and time was obtained. It was observed that as time increased, the oxygen volume fraction exhibited a negative exponential function relationship. Therefore, the critical oxygen consumption rate of the coal sample could be determined.

The data summary also includes observations of airflow velocities along the intake and return airways of the 1304 working face. The measurement route is as follows: starting from the transport roadway to the intake corner of the working face, there were a total of 89 measurement points. Then, reaching the return corner of the working face, there were 26 measurement points. Finally, reaching the return airway, there were 60 measurement points. The measurement method for airflow velocity involved dense point measurements using an anemometer and a stopwatch. The overall data analysis, after removing outliers caused by underground tunnel structures, enabled the identification of the overall pattern of airflow velocity changes along the entire roadway. Combining the data from the working face and the intake and return airways, it was possible to make accurate inferences about the air leakage conditions in the airways. The overall trend of airflow velocity changes along the route was quite evident. Analyzing the curve trend revealed that in the case of insufficient ventilation in the two headings, the primary air leakage from the working face to the goaf occurred through the intake corner. Additionally, there was some air leakage from the overlying 12# coal mining subsidence area above the 1304 working face, which flowed back into the return airway through the intake airway, leading to a noticeable increase in airflow in the return airway section.
DOI: 10.17632/myygy3yfn2.1
title: Turkey Earthquakes 2023 Tweets

description: 100 most popular tweets related to the earthquake in southeast Turkey from February 2023 to April 2023
DOI: 10.17632/9jhnt2zh6d.1
title: Effects of Repeated Frying on Physicochemical Characteristics, Oxidative Stress, and Free Radical Scavenging Potential of Canola Oil and Ghee

description: Supplementary data
DOI: 10.17632/dygjf6wgbb.1
title: Code for: Spectral analysis and random reconstruction of realistic rock joint surfaces

description: Research on the mesoscopic morphological characteristics of joint surfaces has been a topic of considerable interest. Based on discrete cosine transform theory, this code presents an improved spectral analysis workflow for quantitatively characterizing and reconstructing the 3D mesoscopic morphology of rock joint surfaces. First, 3D cloud point data of realistic rock joint surfaces are obtained via photogrammetry scanning. Next, the joint surfaces are segmented and transformed into standard grid data sets, which are regarded as discrete time-domain signals. Based on the discrete cosine transform algorithm, it is possible to convert such a discrete signal in the time domain into a discrete spectrum in the frequency domain. Then, the normalized amplitudes of the modified spectrum are defined as joint morphology descriptors, which are found to be applicable for the characterization and reconstruction of joint surfaces. Accordingly, the roughness coefficients of 310 measured 3D joint samples and 21,000 virtual joint surfaces are evaluated. It is found that joint surfaces with specific roughnesses can be reconstructed. This code provides a useful tool for the rapid random reconstruction of joint surfaces, which is beneficial for providing virtual test samples for numerical modelling. For more detailed instructions, see the readme file in the compressed package.
DOI: 10.17632/dygjf6wgbb.2
title: Code for: Spectral analysis and random reconstruction of realistic rock joint surfaces

description: Research on the mesoscopic morphological characteristics of joint surfaces has been a topic of considerable interest. Based on discrete cosine transform theory, this code presents an improved spectral analysis workflow for quantitatively characterizing and reconstructing the 3D mesoscopic morphology of rock joint surfaces. First, 3D cloud point data of realistic rock joint surfaces are obtained via photogrammetry scanning. Next, the joint surfaces are segmented and transformed into standard grid data sets, which are regarded as discrete time-domain signals. Based on the discrete cosine transform algorithm, it is possible to convert such a discrete signal in the time domain into a discrete spectrum in the frequency domain. Then, the normalized amplitudes of the modified spectrum are defined as joint morphology descriptors, which are found to be applicable for the characterization and reconstruction of joint surfaces. Accordingly, the roughness coefficients of 310 measured 3D joint samples and 21,000 virtual joint surfaces are evaluated. It is found that joint surfaces with specific roughnesses can be reconstructed. This code provides a useful tool for the rapid random reconstruction of joint surfaces, which is beneficial for providing virtual test samples for numerical modelling. For more detailed instructions, see the readme file in the compressed package.
DOI: 10.17632/dygjf6wgbb.3
title: Code for: Spectral analysis and random reconstruction of realistic rock joint surfaces

description: Research on the mesoscopic morphological characteristics of joint surfaces has been a topic of considerable interest. Based on discrete cosine transform theory, this code presents an improved spectral analysis workflow for quantitatively characterizing and reconstructing the 3D mesoscopic morphology of rock joint surfaces. First, 3D cloud point data of realistic rock joint surfaces are obtained via photogrammetry scanning. Next, the joint surfaces are segmented and transformed into standard grid data sets, which are regarded as discrete time-domain signals. Based on the discrete cosine transform algorithm, it is possible to convert such a discrete signal in the time domain into a discrete spectrum in the frequency domain. Then, the normalized amplitudes of the modified spectrum are defined as joint morphology descriptors, which are found to be applicable for the characterization and reconstruction of joint surfaces. Accordingly, the roughness coefficients of 310 measured 3D joint samples and 21,000 virtual joint surfaces are evaluated. It is found that joint surfaces with specific roughnesses can be reconstructed. This code provides a useful tool for the rapid random reconstruction of joint surfaces, which is beneficial for providing virtual test samples for numerical modelling. For more detailed instructions, see the readme file in the compressed package.
DOI: 10.5517/ccdc.csd.cc280n76
title: CCDC 2085997: Experimental Crystal Structure Determination

description: Related Article: K. Naresh Babu, Fedaa Massarwe, Israa Shioukhi, Ahmad Masarwa|2021|Angew.Chem.,Int.Ed.|60|26199|doi:10.1002/anie.202111164
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g21sd
title: CCDC 2266093: Experimental Crystal Structure Determination

description: Related Article: Anh Thu Nguyen Tran, Zhiyuan Wu, Duy T. M. Chung, Phattananawee Nalaoh, Jonathan S. Lindsey|2023|New J.Chem.|47|13626|doi:10.1039/D3NJ02515B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g21tf
title: CCDC 2266094: Experimental Crystal Structure Determination

description: Related Article: Anh Thu Nguyen Tran, Zhiyuan Wu, Duy T. M. Chung, Phattananawee Nalaoh, Jonathan S. Lindsey|2023|New J.Chem.|47|13626|doi:10.1039/D3NJ02515B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g21xj
title: CCDC 2266097: Experimental Crystal Structure Determination

description: Related Article: Anh Thu Nguyen Tran, Zhiyuan Wu, Duy T. M. Chung, Phattananawee Nalaoh, Jonathan S. Lindsey|2023|New J.Chem.|47|13626|doi:10.1039/D3NJ02515B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2fvv
title: CCDC 2266467: Experimental Crystal Structure Determination

description: Related Article: Sachin Liyanage, Jeffrey S. Ovens, Steve Scheiner, David L. Bryce|2023|Chem.Commun.|59|9001|doi:10.1039/D3CC02644B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7193091
title: Data for the publication "Sensitivity of Banner Cloud Formation to Orography and the Ambient Atmosphere: Transition From Idealized to More Realistic Scenarios"

description: Data accompanying the paper titled: "Sensitivity of Banner Cloud Formation to Orography and the Ambient Atmosphere: Transition From Idealized to More Realistic Scenarios" This repository contains output statistics for thirty simulations run with the EULAG model in LES mode (Prusa et al., 2008). We use three distinct configurations of the model domain and its orography, ranging from highly idealized to fully realistic. The configuration with realistic orography is referred to as “Matt_Ref” and covers a domain of 12.8 x 9.6 x 5 km. As our intermediate configuration, we use the realistic orography from the Matterhorn summit protruding from a flat plain, referred to as "Matt_Iso". As our highly idealized configuration we consider a Pyramid protruding from a flat plain, referred to as "Pyr". In both configurations the model domain extends 8 x 4.8 x 3 km. The simulations of all three configurations are performed with an isotropic grid spacing of 25 m.<br> <br> Each zip-file contains six simulations with inflow conditions of a sheared or constant wind profile with 5, 10 and 20 m/s, and neutral stratification up to the height of the mountain summit. For the "Matt_Ref" configuration exists two additional zip-files containing data of a neutral stratification up to 500 meter and 800 meter below the mountain summit. For more details have a look at the paper.
DOI: 10.18154/rwth-2023-06762
title: Supplementary material for the article: Approaching sampling biases of Upper and Final Palaeolithic sites – a geospatial analysis of a European dataset

description: Archaeological sites are not distributed evenly throughout the landscape. For the Palaeolithic record, signals derived from the inhomogeneous spatial patterns are used to infer spatial decision-making processes or ecological preferences of our ancestors. However, to date it is still largely unclear how sampling biases affect the large-scale distribution of sites and whether the observable spatial patterns are actually representative of the distribution of humans in the palaeo-landscape. To answer this question, this dataset containing geolocations of close to 4200 sites was used to assess the spatial distribution from two different perspectives, i.e., past settlement choice and likelihood of discovery. The dataset was compiled from available datasets on archaeological and palaeo-anthropological sites, initially for palaeo-demographic studies according to the Cologne Protocol. As we think that there is even greater potential in the site dataset that we have compiled, we are making it openly accessible for further studies. Refer to the main publication for an in-depth explanation of the dataset.
DOI: 10.5258/soton/d1951
title: Dataset in support of the journal article 'All-fiber saturable absorber based on nonlinear multimode interference with enhanced modulation depth'

description: This dataset contains: The raw data for individual figures The figures are as follows: Fig. 1 Schematic of nonlinear multimode interference (NLMMI) structures: (a) traditional SMF-GIMMF-SMF and (b) our proposed SCF-GIMMF-SMF. Fig. 2 Simulation results of both MMI structures. Transmission ratio of (a) SMF-GIMMF-SMF structure and (b) SCFGIMMF- SMF structure along the propagation distance at different pulse peak powers at 1550 nm. Modulation depth of (c) SMF-GIMMF-SMF and (d) SCF-GIMMF-SMF structures when the length of the GIMMF is 20.006 cm. Fig. 3 Schematic of the experimental setup to measure the modal power distribution in a GIMMF. Fig. 4 Measured modal power distribution in a GIMMF for both (a) SMF-GIMMF and (b) SCF-GIMMF structure. DGD: differential group delay. Fig. 5 Measured modulation depth of SCF-GIMMF-SMF structure. Blue dots are experimental data, red line is fitting curve. Fig. 6 Schematic of the mode-locked fiber laser with a NLMMI structure. LD: laser diode; WDM: wavelength division multiplexing coupler; EDF: erbium-doped fiber; PC: polarization controller; PI-Isolator: polarization-independent isolator; OSA: optical spectrum analyzer. Fig. 7 Experimental results of the mode-locked fiber laser using the proposed SA. (a) Optical spectrum, (b) pulse train, (c) autocorrelation trace of the pulse, and (d) the power relationship between the pump power and output power. CW: continuous wave.
DOI: 10.5281/zenodo.8267900
title: Pharokka Database v1.4.0

description: This holds the databases for Pharokka v1.4.0 (https://github.com/gbouras13/pharokka) It includes the PHROGs database made with MMSeqs2 (v13.45111) and Pyhmmer (v0.9.0 - .h3m file of all 38880 PHROGs), along with MMseqs2 compatible versions of the CARD v3.2.7 and VFDB (as of August 18 2023) databases. It also includes the INPHARED mash sketch and annotation file as of 1 August 2023 (https://github.com/RyanCook94/inphared).
DOI: 10.5281/zenodo.8276347
title: Pharokka Database v1.4.0

description: This holds the databases for Pharokka v1.4.0 (https://github.com/gbouras13/pharokka). It includes the PHROGs database made with MMSeqs2 (v13.45111) and Pyhmmer (v0.9.0 - .h3m file of all 38880 PHROGs), along with MMseqs2 compatible versions of the CARD v3.2.7 and VFDB (as of August 18 2023) databases. The VFDB database has been clustered using MMSeqs2 at 50% sequence identity to reduce its size and speed up Pharokka's runtime. `mmseqs easy-cluster VFDB_setB_pro_form.fas VFDBclusterRes tmp --min-seq-id 0.5 -c 0.8 --cov-mode 1` It also includes the INPHARED mash sketch and annotation file current as of 1 August 2023 (https://github.com/RyanCook94/inphared).