cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8705888.v1
title: Table S1

description: Tab-delimited text file with the position, alleles, alternative frequencies within morphs, F-statistics between morphs and samples and predicted effect of the variant on protein composition for all the variants after the final filtering step.<br><b>id: </b>Identifier for each variant from 1 to 19,252<b>transcript_id: </b>Name of the transcript from the Trinity assembly.<b>start:</b> Start position of polymorphism within contig.<b>end: </b>End position of polymorphism within contig.<b>ref: </b>Base(s) of the reference allele.<b>alt: </b>Base(s) of the alternative allele.<b>var_pos: </b>Position of polymorphism within contig.<b>NCBI_id: </b>Sequence identifier for chromosome or scaffold in genome.<b>Chr:</b> Name of chromosome.<b>Chr_pos:</b> Position mapped to in chromosome.<b>Freq_LB:</b> Frequency of alternative allele within the LB morph.<b>Freq_PL:</b> Frequency of alternative allele within the PL morph.<b>Freq_SB:</b> Frequency of alternative allele within the SB morph.<b>Fst:</b> Estimate of F ST between morphs.<b>Fpt:</b> Estimate of F P T or variation among samples (pools). See methods for further explanation.<b>effect:</b> Which effect does the mutation have on the gene, 3’- and 5’ UTR indicate mutations in those regions, synonymousdo not change the reading frame but mutations that do so are coded as transitions from one amino acid to another (single letter a.a. code)<b>gene_name:</b> Gene name based on SalmonBase annotation.
DOI: 10.6084/m9.figshare.8691005
title: Identification of critical success factors, risks and opportunities of Industry 4.0 in SMEs

description: SMEs, as prominent actors in industry, must meet more and more complex customer expectations. Recently, the concept of Industry 4.0 has emerged. This new approach enables the control of production processes by providing real-time synchronisation of flows and by enabling the production of unitary and customised products. Our research goal is to identify Industry 4.0 risks, opportunities and critical success factors with regards to the industrial performance of SMEs. The recent emergence of Industry 4.0 and the inherent difficulty of identifying detailed examples has not yet enabled a satisfactory statistical study to be conducted on Industry 4.0 cases in SMEs. To reach our research goal, we selected 12 experts to conduct a Delphi study supplemented by Régnier’s abacuses. Our study demonstrates that the major risks facing the adoption of Industry 4.0 in SMEs include a lack of expertise and a short-term strategy mindset. Our research also indicates that training is the most important factor for success, that managers have a prominent role in the success and/or failure of an Industry 4.0 project, and that SMEs should be supported by external experts. Lastly, Industry 4.0 offers a unique opportunity to redesign SME production processes and to adopt new business models.
DOI: 10.6084/m9.figshare.8691005.v1
title: Identification of critical success factors, risks and opportunities of Industry 4.0 in SMEs

description: SMEs, as prominent actors in industry, must meet more and more complex customer expectations. Recently, the concept of Industry 4.0 has emerged. This new approach enables the control of production processes by providing real-time synchronisation of flows and by enabling the production of unitary and customised products. Our research goal is to identify Industry 4.0 risks, opportunities and critical success factors with regards to the industrial performance of SMEs. The recent emergence of Industry 4.0 and the inherent difficulty of identifying detailed examples has not yet enabled a satisfactory statistical study to be conducted on Industry 4.0 cases in SMEs. To reach our research goal, we selected 12 experts to conduct a Delphi study supplemented by Régnier’s abacuses. Our study demonstrates that the major risks facing the adoption of Industry 4.0 in SMEs include a lack of expertise and a short-term strategy mindset. Our research also indicates that training is the most important factor for success, that managers have a prominent role in the success and/or failure of an Industry 4.0 project, and that SMEs should be supported by external experts. Lastly, Industry 4.0 offers a unique opportunity to redesign SME production processes and to adopt new business models.
DOI: 10.6084/m9.figshare.8687711
title: Redescription of the western Balkan species <i>Xerocampylaea waldemari</i> and its phylogenetic relationships to other Urticicolini (Gastropoda: Hygromiidae)

description: The proper identification of species has significant implications for conservation and general knowledge of ecosystem variety. It is especially important for biodiversity hotspots and former Pleistocene refugia, such as the Balkans. In this paper, we evaluate the taxonomic status of the endemic Balkan species <i>Fruticicola waldemari</i> A. J. Wagner, 1912, using both recently collected material and museum specimens. Phylogenetic analyses based on two mitochondrial markers, 16S rRNA and cytochrome c oxidase subunit I, show that this species is closely related to the representatives of <i>Xerocampylaea</i>, including a conchologically similar and partly sympatric species, <i>X. erjaveci</i>. Analyses of shell and genital morphology as well as mitochondrial DNA sequences indicate that <i>X. waldemari</i> and <i>X. erjaveci</i> are separate but closely related species. These species differ in shell morphology (size, umbilicus diameter, microsculpture) as well as genital morphology. Nevertheless, a further study with more comprehensive sampling of both taxa is required to fully understand the complex pattern of genetic and morphological variation observed.
DOI: 10.6084/m9.figshare.8681483
title: OP-MEG and SQUID-MEG activation maps

description: Group-level thresholded F-stat conjunction images for OP-MEG and SQUID-MEG during the imagination of novel scenes.
DOI: 10.6084/m9.figshare.8681483.v1
title: OP-MEG and SQUID-MEG activation maps

description: Group-level thresholded F-stat conjunction images for OP-MEG and SQUID-MEG during the imagination of novel scenes.
DOI: 10.6084/m9.figshare.8679641
title: Umbilical artery resitive index.xlsx

description: Umbilical artery resistive index in late pregnancy in foetuses from brachycephalic and non-brachycephalic bitchesin late pregnancy.
DOI: 10.6084/m9.figshare.8679095
title: DNN Models based on Dimensionality Reduction for Stock Trading

description: In order to avoid missing representative features, we should select a lot of features as far as possible when using machine learning algorithms in stock trading. Meanwhile, these high dimensional features can lead to redundancy of information and reduce the efficiency, and accuracy of learning algorithms. It is worth noting that dimensionality reduction operation (DRO) is one of the main means to deal with stock high-dimensional data. However, there are few studies on whether DRO can significantly improve the trading performance of deep neural network (DNN) algorithms. Therefore, this paper selects large-scale stock datasets in the American market and in the Chinese market as the research objects. For each stock, we firstly apply four most widely used DRO, namely principal component analysis (PCA), least absolute shrinkage and selection operator (LASSO), classification and regression trees (CART), and autoencoder (AE) to deal with original features respectively, and then use the new features as inputs of the most six popular DNN algorithms such as Multilayer Perceptron (MLP), Deep Belief Network (DBN), Stacked Auto-Encoders(SAE), Recurrent Neural Network(RNN), Long Short-Term Memory(LSTM), Gated Recurrent Unit(GRU) to generate trading signals. Finally, we apply the trading signals to conduct a lot of daily trading back-testing and non-parameter statistical testing. The experiments show that LASSO can significantly improve the performance of RNN, LSTM, and GRU. In addition, any DRO mentioned in this paper do not significantly improve trading performance and the speed of generating trading signals of the other DNN algorithms.
DOI: 10.6084/m9.figshare.8678483
title: Source file for all images (p53-Fbw7a)

description: Raw data of the paper on the degradation of p53 by Fbw7a
DOI: 10.6084/m9.figshare.8687711.v1
title: Redescription of the western Balkan species <i>Xerocampylaea waldemari</i> and its phylogenetic relationships to other Urticicolini (Gastropoda: Hygromiidae)

description: The proper identification of species has significant implications for conservation and general knowledge of ecosystem variety. It is especially important for biodiversity hotspots and former Pleistocene refugia, such as the Balkans. In this paper, we evaluate the taxonomic status of the endemic Balkan species <i>Fruticicola waldemari</i> A. J. Wagner, 1912, using both recently collected material and museum specimens. Phylogenetic analyses based on two mitochondrial markers, 16S rRNA and cytochrome c oxidase subunit I, show that this species is closely related to the representatives of <i>Xerocampylaea</i>, including a conchologically similar and partly sympatric species, <i>X. erjaveci</i>. Analyses of shell and genital morphology as well as mitochondrial DNA sequences indicate that <i>X. waldemari</i> and <i>X. erjaveci</i> are separate but closely related species. These species differ in shell morphology (size, umbilicus diameter, microsculpture) as well as genital morphology. Nevertheless, a further study with more comprehensive sampling of both taxa is required to fully understand the complex pattern of genetic and morphological variation observed.
DOI: 10.17028/rd.lboro.8677766
title: Measuring the potential of zonal space heating controls to reduce energy use in UK homes: The case of un-furbished 1930s dwellings - dataset

description: This data was created as part of Arash Beizaee's PhD studies.<br>Please see the associated paper at http://dx.doi.org/10.1016/j.enbuild.2015.01.040 for more information.
DOI: 10.6084/m9.figshare.8677763
title: Ch2_SupplementaryTables

description: Supplementary tables for Chapter 2 of my PhD thesis.
DOI: 10.6084/m9.figshare.8677763.v1
title: Ch2_SupplementaryTables

description: Supplementary tables for Chapter 2 of my PhD thesis.
DOI: 10.17028/rd.lboro.8677766.v1
title: Measuring the potential of zonal space heating controls to reduce energy use in UK homes: The case of un-furbished 1930s dwellings - dataset

description: This data was created as part of Arash Beizaee's PhD studies.<br>Please see the associated paper at http://dx.doi.org/10.1016/j.enbuild.2015.01.040 for more information.
DOI: 10.6084/m9.figshare.8677451
title: Ch5_SupplementaryTables.xlsx

description: Supplementary tables for Chapter 5 of my PhD thesis.
DOI: 10.6084/m9.figshare.8677451.v1
title: Ch5_SupplementaryTables.xlsx

description: Supplementary tables for Chapter 5 of my PhD thesis.
DOI: 10.6084/m9.figshare.8672507
title: Immune gene expression in developing honey bees (<i>Apis mellifera</i> L.) simultaneously exposed to imidacloprid and <i>Varroa destructor</i> in laboratory conditions

description: The impact of widespread pesticide use in agriculture has been a major concern to the beekeeping industry. Accumulating evidence suggests that pesticides have a negative impact on honey bees. Additionally, honey bees exposed to different stressors, such as parasites and the pathogens they vector, may further affect their health. The aim of this study was to investigate the combined or sole effect of two stressors on developing honey bees under laboratory conditions where larvae were <i>per os</i> treated with realistic field doses of imidacloprid and later infested with <i>Varroa destructor.</i> Here, we present a gene expression profile of 15 immune-related genes in different honey bee development stages (white-eyed pupae, brown-eyed pupae, and emerged honey bees). Our results show that pesticide consumed in the larval stage lead to a decrease in immune response of bees in early development stages (white- and brown-eyed pupae) and later to an increase in honey bee immune response, and thus honey bee health may be challenged. The gene expression patterns of Varroa infested honey bees changed during development with the number of significantly differentially expressed genes increasing from white-eyed pupae to newly emerged honey bees. The effect of both stressors has a significant effect on antimicrobial peptides and genes involved in defense (<i>apidaecin</i>, <i>hymenoptaecin</i>, <i>defensin-1</i>, <i>lysozyme-2</i>, and <i>PPO</i>) in different developmental stages. All tested honey bees exposed to Varroa had significantly elevated DWV loads. Overall, our data showed changes in immune-related gene expression of three honey bee development stages, exposed to each of two stressors alone or combined, which varies depending on the developmental stage.
DOI: 10.6084/m9.figshare.8670047
title: Identification of leopard frogs (Anura: Ranidae: <i>Lithobates</i>) distributed in some localities of the Southern Mexican Plateau using mitochondrial DNA sequences

description: Species of the genus <i>Lithobates</i> are difficult to identify, especially on the <i>‘Rana pipiens’</i> complex, because the morphological differences among the species are often subtle. In this study, we used 12S ribosomal RNA gene partial sequences to identify specimens of leopard frogs from some new localities (not sampled on previous studies) of the Southern Mexican Plateau, to carry out a phylogenetic analysis, and also a morphometric analysis of some morphological features were analyzed to evaluate their morphological variation. A phylogenetic analysis using partial sequences of 12S rDNA mitochondrial gene for 31 samples was carried out using Bayesian Inference, Maximum Parsimony, and Maximum Likelihood. In addition, 20 morphological lineal measurements from 97 specimens were analyzed by principal component analysis (PCA) to evaluate if the frogs studied are conspecific. Partial sequences of the 12S rDNA obtained from frogs distributed in the Southern Mexican Plateau show two haplotypes with a divergence of 0.4%. Phylogenetic hypothesis shows an exclusive group with a previous sequence of <i>Lithobates montezumae</i>. The PCA indicates that variables are not linearly correlated and specimens belong to a single group. Evidence found, let us consider that specimens studied belong to one species of the <i>Lithobates montezumae</i> subgroup, distributed principally in the Southern Mexican Plateau.
DOI: 10.6084/m9.figshare.8672507.v1
title: Immune gene expression in developing honey bees (<i>Apis mellifera</i> L.) simultaneously exposed to imidacloprid and <i>Varroa destructor</i> in laboratory conditions

description: The impact of widespread pesticide use in agriculture has been a major concern to the beekeeping industry. Accumulating evidence suggests that pesticides have a negative impact on honey bees. Additionally, honey bees exposed to different stressors, such as parasites and the pathogens they vector, may further affect their health. The aim of this study was to investigate the combined or sole effect of two stressors on developing honey bees under laboratory conditions where larvae were <i>per os</i> treated with realistic field doses of imidacloprid and later infested with <i>Varroa destructor.</i> Here, we present a gene expression profile of 15 immune-related genes in different honey bee development stages (white-eyed pupae, brown-eyed pupae, and emerged honey bees). Our results show that pesticide consumed in the larval stage lead to a decrease in immune response of bees in early development stages (white- and brown-eyed pupae) and later to an increase in honey bee immune response, and thus honey bee health may be challenged. The gene expression patterns of Varroa infested honey bees changed during development with the number of significantly differentially expressed genes increasing from white-eyed pupae to newly emerged honey bees. The effect of both stressors has a significant effect on antimicrobial peptides and genes involved in defense (<i>apidaecin</i>, <i>hymenoptaecin</i>, <i>defensin-1</i>, <i>lysozyme-2</i>, and <i>PPO</i>) in different developmental stages. All tested honey bees exposed to Varroa had significantly elevated DWV loads. Overall, our data showed changes in immune-related gene expression of three honey bee development stages, exposed to each of two stressors alone or combined, which varies depending on the developmental stage.
DOI: 10.6084/m9.figshare.8670047.v2
title: Identification of leopard frogs (Anura: Ranidae: <i>Lithobates</i>) distributed in some localities of the Southern Mexican Plateau using mitochondrial DNA sequences

description: Species of the genus <i>Lithobates</i> are difficult to identify, especially on the <i>‘Rana pipiens’</i> complex, because the morphological differences among the species are often subtle. In this study, we used 12S ribosomal RNA gene partial sequences to identify specimens of leopard frogs from some new localities (not sampled on previous studies) of the Southern Mexican Plateau, to carry out a phylogenetic analysis, and also a morphometric analysis of some morphological features were analyzed to evaluate their morphological variation. A phylogenetic analysis using partial sequences of 12S rDNA mitochondrial gene for 31 samples was carried out using Bayesian Inference, Maximum Parsimony, and Maximum Likelihood. In addition, 20 morphological lineal measurements from 97 specimens were analyzed by principal component analysis (PCA) to evaluate if the frogs studied are conspecific. Partial sequences of the 12S rDNA obtained from frogs distributed in the Southern Mexican Plateau show two haplotypes with a divergence of 0.4%. Phylogenetic hypothesis shows an exclusive group with a previous sequence of <i>Lithobates montezumae</i>. The PCA indicates that variables are not linearly correlated and specimens belong to a single group. Evidence found, let us consider that specimens studied belong to one species of the <i>Lithobates montezumae</i> subgroup, distributed principally in the Southern Mexican Plateau.
DOI: 10.6084/m9.figshare.8668412
title: Influence of mutagenic versus non-mutagenic pre-operative chemotherapy on the immune infiltration of residual breast cancer

description: <b>Background:</b> Chemotherapeutic agents are often mutagenic. Induction of mutation associated neo-epitopes is one of the mechanisms by which chemotherapy is thought to increase the number of tumor-infiltrating lymphocytes. It is not known, however, whether treatment with various chemotherapeutic agents with different mutagenic capacity induce a significantly different number of stromal tumor-infiltrating lymphocytes (StrTIL) in residual cancer. <b>Methods:</b> One hundred and twenty breast carcinoma cases with residual disease that were treated with one of three types of pre-operative chemotherapy regimens were selected for the study. The percentage of StrTIL was evaluated in pretreatment core biopsies (pre-StrTIL) and post-treatment surgical tumor samples (post-StrTIL). TIL changes (ΔStrTIL) were calculated from the difference between post-StrTIL and pre-StrTIL. <b>Results:</b> When analyzing the pre-StrTIL and post-StrTIL among the three treatment groups, we detected significant StrTIL increase independently of the treatment applied. Based on distant metastases-free survival analysis, both post-StrTIL and ΔStrTIL was found to be independent prognostic factor in HR negative cases. <b>Conclusions:</b> Significant increase of StrTIL in the residual disease was observed in patients treated with the highly (platinum), moderately (cyclophosphamide) and marginally mutagenic chemotherapeutic agents (taxane, anthracycline). Increase in StrTIL in residual cancer compared to pretreatment tumor tissue is associated with improved distant metastasis-free survival in cases with HR negative breast carcinoma.
DOI: 10.6084/m9.figshare.8668412.v1
title: Influence of mutagenic versus non-mutagenic pre-operative chemotherapy on the immune infiltration of residual breast cancer

description: <b>Background:</b> Chemotherapeutic agents are often mutagenic. Induction of mutation associated neo-epitopes is one of the mechanisms by which chemotherapy is thought to increase the number of tumor-infiltrating lymphocytes. It is not known, however, whether treatment with various chemotherapeutic agents with different mutagenic capacity induce a significantly different number of stromal tumor-infiltrating lymphocytes (StrTIL) in residual cancer. <b>Methods:</b> One hundred and twenty breast carcinoma cases with residual disease that were treated with one of three types of pre-operative chemotherapy regimens were selected for the study. The percentage of StrTIL was evaluated in pretreatment core biopsies (pre-StrTIL) and post-treatment surgical tumor samples (post-StrTIL). TIL changes (ΔStrTIL) were calculated from the difference between post-StrTIL and pre-StrTIL. <b>Results:</b> When analyzing the pre-StrTIL and post-StrTIL among the three treatment groups, we detected significant StrTIL increase independently of the treatment applied. Based on distant metastases-free survival analysis, both post-StrTIL and ΔStrTIL was found to be independent prognostic factor in HR negative cases. <b>Conclusions:</b> Significant increase of StrTIL in the residual disease was observed in patients treated with the highly (platinum), moderately (cyclophosphamide) and marginally mutagenic chemotherapeutic agents (taxane, anthracycline). Increase in StrTIL in residual cancer compared to pretreatment tumor tissue is associated with improved distant metastasis-free survival in cases with HR negative breast carcinoma.
DOI: 10.6084/m9.figshare.8668418.v1
title: Discriminative power of acoustic features for jaw movement classification in cattle and sheep

description: Measuring foraging behaviour and pasture intake of ruminants is useful but difficult. Acoustic monitoring is one of the most promising methods for this task. In this work, we test its potential to classify jaw movements (JM) according to type (bite, chew, chew-bite), activity (grazing or rumination), and forage species being consumed. Experiments with cows and sheep grazing and ruminating several forages were conducted. First, each JM was manually identified, classified and described by two sets of sound features: i) one containing energy bands of the spectrum (EB), and ii) one containing four complementary (or global) variables (CV). Two models were evaluated, one with EB alone and the other one combining EB and CV. Jaw movements were correctly classified by type with 73.0% and 78.5% average accuracy. Accuracy was better for cows than sheep (85 vs 66%). Simultaneous identification of the type of JM and plant species was about 78%. Classification accuracy of activity based on chews averaged 68.5% and 77.0% for rumination and grazing. Models including global variables performed better than using only the spectrum. Acoustic monitoring is a very promising method for further development, particularly to study diet selection.
DOI: 10.6084/m9.figshare.8668265
title: Food categories

description: The list of products contained in each food category. The identifiers associated to products can be used to query external services to get additional information about them.<br>The file is comma-separated. Fields include:<br><b>GTIN:</b> Global Trade Item Number, a standard identifier for trade items developed by GS1, a not-for-profit organization that develops and maintains global standards for business communication. Specifically, the GTIN is the number that comes with the barcode on the product label. GS1 offers an online service for GTIN lookup (http://gepir.gs1.org/index.php/search-by-gtin)<br><br><b>category: </b>product category. The possible categories are: beer, dairy, eggs, fats & oils, fish, fruit & veg, grains, red meat, poultry, readymade, sauces, soft drinks, spirits, sweets, tea & coffee, water, and wine<br>