cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11865495
title: A lithology database from historical 457 boreholes in the Llobregat River Delta aquifers in northeastern Spain

description: A database including detailed lithology from historical 457 mechanical boreholes performed in the Llobregat River Delta (emerged and submerged sectors) in Barcelona province, northeastern Spain, is provided for public interests. All data are supplied in the Spanish version. This dataset is arranged in two *.RAR files as follows:File "01_Topography.rar" includes a folder with 23 PDF files corresponding to topographic sheets. The file “00_Full_Topographic_Division” shows the general topography of the emerged sector of the Llobregat River Delta, which in turn is divided into 31 topographic sheets at scale 1: 5,000. Only those 22 sheets having boreholes with geological data are included, that is, those corresponding to the PDF files called A3, A4, A5, B3, B4, B5, B6, C3, C4, C5, C6, D2, D3, D4, D5, E2, E3, E4, E5, F1, F2, and F3. The location of each borehole surveyed appears on each sheet, as does its code. File "02_Boreholes.rar" a folder with 24 files concerning to boreholes data. The file "00_Legend" includes the homogenized legend of lithology found in all boreholes. The rest of the 23 PDF files are called A3, A4, A5, B3, B4, B5, B6 (this sheet is omitted because there was not cartography on the sea), C3, C4, C5, C6, D2, D3, D4, D5, D6, E2, E3, E4, E5, F1, F2, and F3. Each of these files show the sequence of boreholes located in each of the above described topographic sheets at scale 1: 5,000.
DOI: 10.6084/m9.figshare.11865474
title: Table S2 from The mark of captivity: plastic responses in the ankle bone of a wild ungulate (<i>Sus scrofa</i>)

description: Summary of the factorial MANOVA with permutation test (999 iterations) testing for calcaneus shape difference among wild caught wild boars, traditionnal pig breeds and improved pig breeds taking into account their sex.
DOI: 10.6084/m9.figshare.11865474.v1
title: Table S1 from The mark of captivity: plastic responses in the ankle bone of a wild ungulate (<i>Sus scrofa</i>)

description: Details for grouping factors (GP1, GP2), bodymass (kg), age (months), sex, muscle PCSA, calcaneus centroid size (C.Size) and available ranging area (m²) available for the studied specimens
DOI: 10.6084/m9.figshare.11865465.v1
title: straits.txt from Functional volumes, niche packing and species richness: biogeographic legacies in the Congo Basin

description: Code for "Functional volumes, niche packing, and species richness: biogeographic legacies in the Congo Basin"
DOI: 10.6084/m9.figshare.11865453
title: Supplementary table 1 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: Significantly enriched KEGG pathways for CS midgut and the DE genes found within the enriched pathways. Genes have been annotated with Entrez gene ID, Gene symbol and gene description. DE data (log fold change and adjusted p value) has been included for each gene. A condensed version of this table (showing only gene symbols) can be seen in Table 3 in the body of this article.
DOI: 10.6084/m9.figshare.11865453.v1
title: Supplementary table 2 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: Significantly enriched KEGG pathways for CS hindgut and the DE genes found within the enriched pathways. Genes have been annotated with Entrez gene ID, Gene symbol and gene description. DE data (log fold change and adjusted p value) has been included for each gene. A condensed version of this table (showing only gene symbols) can be seen in Table 4 in the body of this article.
DOI: 10.6084/m9.figshare.11865465.v3
title: Rscript.R from Functional volumes, niche packing and species richness: biogeographic legacies in the Congo Basin

description: R script for "Functional volumes, niche packing, and species richness: biogeographic legacies in the Congo Basin"
DOI: 10.6084/m9.figshare.11865453.v2
title: Supplementary table 5 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: Significantly enriched KEGG pathways for genes differentially expressed in both midgut and hindgut.. Genes have been annotated with Entrez gene ID, Gene symbol and gene description. DE data (log fold change and adjusted p value) in both midgut and hindgut has been included for each gene.
DOI: 10.6084/m9.figshare.11865465.v4
title: Shrew_DRC_final.txt from Functional volumes, niche packing and species richness: biogeographic legacies in the Congo Basin

description: Code for "Functional volumes, niche packing, and species richness: biogeographic legacies in the Congo Basin"
DOI: 10.6084/m9.figshare.11865450
title: A 1-km resolution dataset of African humid tropical forests aboveground biomass derived from management inventories

description: The CoFor-AGB dataset is distributed as a four layers GeoTIFF file. The file projection system is World Mercator (EPSG: 3395). Layers’ information are provided below.<br>Layer 1: Mean pixel AGB (in Mg.ha<sup>-1</sup>) Layer 2: Number of field plots within the pixelLayer 3: Mean date of plots inventory, expressed in fractional year Layer 4: Inter-plot variance (in Mg<sup>2</sup>.ha<sup>-2</sup>) Layer 5: Intra-plot variance (in Mg<sup>2</sup>.ha<sup>-2</sup>) <br><br> See the associated Data Descriptor for details : Ploton et al., 2020, Scientific data. doi:10.1038/s41597-020-0561-0.
DOI: 10.6084/m9.figshare.11865465.v5
title: Shrew_DRC_final.txt from Functional volumes, niche packing and species richness: biogeographic legacies in the Congo Basin

description: Code for "Functional volumes, niche packing, and species richness: biogeographic legacies in the Congo Basin"
DOI: 10.6084/m9.figshare.11865447
title: Signatures of co-deregulated genes and their transcriptional regulators in colorectal cancer.

description: Differentially expressed genes (up- or downregulated) in colorectal cancer against the normal mucosa (CRC vs Normal); single-gene perturbations or single-drug perturbations in CRC experiments, and co-deregulated genes (co-DEGs) between at least to different experiments.Differentially expressed genes (DEGs) and co-deregulated genes (co-DEGs) between at least two independent datasets, in experiments with: 1) colorectal cancer against the normal mucosa; 2) single-gene perturbation experiments in colorectal cancer, or 3) single-drug perturbation experiments in colorectal cancer.
DOI: 10.6084/m9.figshare.11865453.v3
title: Supplementary table 4 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: List of all expressed genes discovered in the midgut, including the differential expression results - log fold change difference and adjusted p values - between CS and control groups. Genes are annotated with Entrez ID, gene symbol and gene description.
DOI: 10.6084/m9.figshare.11865447.v1
title: Signatures of co-deregulated genes and their transcriptional regulators in colorectal cancer.

description: Differentially expressed genes (up- or downregulated) in colorectal cancer against the normal mucosa (CRC vs Normal); single-gene perturbations or single-drug perturbations in CRC experiments, and co-deregulated genes (co-DEGs) between at least to different experiments.
DOI: 10.6084/m9.figshare.11865453.v5
title: Analysis pipeline for R. from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: R code
DOI: 10.6084/m9.figshare.11865453.v7
title: Supplementary table 6 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: List of genes that were significantly differentially expressed in both midgut vs control and hindgut vs control. Includes log fold change difference and adjusted p values for both midgut and hindgut and genes are annotated with Entrez ID, gene symbol and gene description.
DOI: 10.6084/m9.figshare.11865453.v9
title: Supplementary table 1 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: Significantly enriched KEGG pathways for CS midgut and the DE genes found within the enriched pathways. Genes have been annotated with Entrez gene ID, Gene symbol and gene description. DE data (log fold change and adjusted p value) has been included for each gene. A condensed version of this table (showing only gene symbols) can be seen in Table 3 in the body of this article.
DOI: 10.6084/m9.figshare.11865453.v8
title: Supplementary table 3 from Mid and hindgut transcriptome profiling analysis of Atlantic salmon (<i>Salmon salar</i>) under unpredictable chronic stress

description: List of all expressed genes discovered in the hindgut, including the differential expression results - log fold change difference and adjusted p values - between CS and control groups. Genes are annotated with Entrez ID, gene symbol and gene description.
DOI: 10.5517/ccdc.csd.cc25b3j5
title: CCDC 2005716: Experimental Crystal Structure Determination

description: Related Article: Julio Romero-Ibañez, Enrique Cruz-Gregorio, Silvano Cruz-Gregorio, Leticia Quintero, Sylvain Bernès, Mario González-Perea, Fernando Sartillo-Piscil|2020|Tetrahedron Lett.|61|152279|doi:10.1016/j.tetlet.2020.152279
DOI: 10.5517/ccdc.csd.cc25b3k6
title: CCDC 2005717: Experimental Crystal Structure Determination

description: Related Article: Julio Romero-Ibañez, Enrique Cruz-Gregorio, Silvano Cruz-Gregorio, Leticia Quintero, Sylvain Bernès, Mario González-Perea, Fernando Sartillo-Piscil|2020|Tetrahedron Lett.|61|152279|doi:10.1016/j.tetlet.2020.152279
DOI: 10.5517/ccdc.csd.cc25bdjg
title: CCDC 2005995: Experimental Crystal Structure Determination

description: Related Article: Yang Yuan, Ye Wang, Yuanyang Mu, Murong Xu, Siyi Fu, Lingkai Kong, Yanzhong Li|2020|Org.Lett.|22|6532|doi:10.1021/acs.orglett.0c02307
DOI: 10.5517/ccdc.csd.cc25bdkh
title: CCDC 2005996: Experimental Crystal Structure Determination

description: Related Article: Yang Yuan, Ye Wang, Yuanyang Mu, Murong Xu, Siyi Fu, Lingkai Kong, Yanzhong Li|2020|Org.Lett.|22|6532|doi:10.1021/acs.orglett.0c02307
DOI: 10.5517/ccdc.csd.cc25dh7b
title: CCDC 2008001: Experimental Crystal Structure Determination

description: Related Article: Shu-Jin Bao, Ze-Ming Xu, Yun Ju, Ying-Lin Song, Heng Wang, Zheng Niu, Xiaopeng Li, Pierre Braunstein, Jian-Ping Lang|2020|J.Am.Chem.Soc.|142|13356|doi:10.1021/jacs.0c07014
DOI: 10.5517/ccdc.csd.cc25dh9d
title: CCDC 2008003: Experimental Crystal Structure Determination

description: Related Article: Shu-Jin Bao, Ze-Ming Xu, Yun Ju, Ying-Lin Song, Heng Wang, Zheng Niu, Xiaopeng Li, Pierre Braunstein, Jian-Ping Lang|2020|J.Am.Chem.Soc.|142|13356|doi:10.1021/jacs.0c07014
DOI: 10.5517/ccdc.csd.cc25dhmq
title: CCDC 2008013: Experimental Crystal Structure Determination

description: Related Article: Shu-Jin Bao, Ze-Ming Xu, Yun Ju, Ying-Lin Song, Heng Wang, Zheng Niu, Xiaopeng Li, Pierre Braunstein, Jian-Ping Lang|2020|J.Am.Chem.Soc.|142|13356|doi:10.1021/jacs.0c07014
DOI: 10.5517/ccdc.csd.cc21jn6g
title: CCDC 1892835: Experimental Crystal Structure Determination

description: Related Article: Zhihong Deng, Peng Wu, Yapeng Cai, Yanheng Sui, Zhixin Chen, Hong Zhang, Binju Wang, Haiping Xia|2020|iScience|23|101379|doi:10.1016/j.isci.2020.101379
DOI: 10.5517/ccdc.csd.cc25fzl6
title: CCDC 2009438: Experimental Crystal Structure Determination

description: Related Article: Yusen Luo, Salam Maloul, Patrick Endres, Stefanie Schönweiz, Chris Ritchie, Maria Wächtler, Andreas Winter, Ulrich S. Schubert, Carsten Streb, Benjamin Dietzek|2020|Sustainable Energy Fuels|4|4688|doi:10.1039/D0SE00582G
DOI: 10.6084/m9.figshare.11865117
title: Supplementary Material for: Research Participants’ Attitudes towards Receiving Information on Genetic Susceptibility to Arsenic Toxicity in Rural Bangladesh

description: <b><i>Background:</i></b> In human genetics research, it has become common practice for researchers to consider returning genetic information to participants who wish to receive it. Research participants in lower-resource settings may have barriers or competing interests that reduce the benefit or relevance of such information. Thus, the decision to return genetic information in these settings may involve special considerations of participants’ interests and preferences. In this project, our goal was to assess Bangladeshi research participants’ attitudes towards receiving information regarding genetic susceptibility to the effects of consuming arsenic-contaminated drinking water, a serious environmental health concern in Bangladesh and other countries. <b><i>Methods:</i></b> We administered a short questionnaire to 200 individuals participating in the Health Effects of Arsenic Longitudinal Study. Associations between survey responses and participant characteristics were estimated using logistic regression. <b><i>Results:</i></b> Overall, 100% of our participants were interested in receiving information regarding their genetic susceptibility to arsenic toxicities, and 91% indicated that being at increased genetic risk would motivate them to make efforts to reduce their exposure. Lower levels of education showed evidence of association with less concern regarding the health effects of arsenic and lower levels of motivation to reduce exposure in response to genetic information. <b><i>Conclusions:</i></b> Research participants in this low-resource setting appeared interested in receiving information on their genetic susceptibility to arsenic toxicity and motivated to reduce exposure in response to such information. Additional research is needed to understand how best to communicate genetic information in this population and to assess the impact of such information on individuals’ behaviors and health.
DOI: 10.6084/m9.figshare.11865117.v1
title: Supplementary Material for: Research Participants’ Attitudes towards Receiving Information on Genetic Susceptibility to Arsenic Toxicity in Rural Bangladesh

description: <b><i>Background:</i></b> In human genetics research, it has become common practice for researchers to consider returning genetic information to participants who wish to receive it. Research participants in lower-resource settings may have barriers or competing interests that reduce the benefit or relevance of such information. Thus, the decision to return genetic information in these settings may involve special considerations of participants’ interests and preferences. In this project, our goal was to assess Bangladeshi research participants’ attitudes towards receiving information regarding genetic susceptibility to the effects of consuming arsenic-contaminated drinking water, a serious environmental health concern in Bangladesh and other countries. <b><i>Methods:</i></b> We administered a short questionnaire to 200 individuals participating in the Health Effects of Arsenic Longitudinal Study. Associations between survey responses and participant characteristics were estimated using logistic regression. <b><i>Results:</i></b> Overall, 100% of our participants were interested in receiving information regarding their genetic susceptibility to arsenic toxicities, and 91% indicated that being at increased genetic risk would motivate them to make efforts to reduce their exposure. Lower levels of education showed evidence of association with less concern regarding the health effects of arsenic and lower levels of motivation to reduce exposure in response to genetic information. <b><i>Conclusions:</i></b> Research participants in this low-resource setting appeared interested in receiving information on their genetic susceptibility to arsenic toxicity and motivated to reduce exposure in response to such information. Additional research is needed to understand how best to communicate genetic information in this population and to assess the impact of such information on individuals’ behaviors and health.
DOI: 10.6084/m9.figshare.11865033
title: Spearman’s correlation coefficients.xlsx

description: The file contains the Spearman coefficients of the correlation analysis for the skills of the software testers.The first worksheet received as input the numeric analysis of the skill requirements of the GSE-testers, the second worksheet regarded the non-GSE testers, the third worksheet received as input noise (a random-numbers generated matrix). We obtained strong, moderate and little correlations for both the GSE and non-GSE testers, while the noise generated no strong or moderated correlations.
DOI: 10.6084/m9.figshare.11865033.v1
title: Spearman’s correlation coefficients.xlsx

description: The file contains the Spearman coefficients of the correlation analysis for the skills of the software testers.The first worksheet received as input the numeric analysis of the skill requirements of the GSE-testers, the second worksheet regarded the non-GSE testers, the third worksheet received as input noise (a random-numbers generated matrix). We obtained strong, moderate and little correlations for both the GSE and non-GSE testers, while the noise generated no strong or moderated correlations.
DOI: 10.6084/m9.figshare.11865015
title: Slow P wave versus diffussive wave in Berea sandstone

description: Phase velocity and the quality factor of slow P wave in Biot theory v.s. diffussive wave in storitivity equation
DOI: 10.6084/m9.figshare.11865015.v1
title: Slow P wave versus diffussive wave in Berea sandstone

description: Phase velocity and the quality factor of slow P wave in Biot theory v.s. diffussive wave in storitivity equation
DOI: 10.6084/m9.figshare.11864622
title: Full-length transcriptome sequencing from multiple immune-related tissues of Paralichthys olivaceus

description: The alternative splicing events, alternative polyadenylation events, novel genes, fusion genes, all of the predicted transcription factors and all of the predicted lncRNAs of Paralichthys olivaceus were deposited in this dataset.
DOI: 10.6084/m9.figshare.11864622.v1
title: Full-length transcriptome sequencing from multiple immune-related tissues of Paralichthys olivaceus

description: The alternative splicing events, alternative polyadenylation events, novel genes, fusion genes, all of the predicted transcription factors and all of the predicted lncRNAs of Paralichthys olivaceus were deposited in this dataset.
DOI: 10.6084/m9.figshare.11864595
title: HPOLabeler_data.zip

description: Dataset used in paper "HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank"
DOI: 10.6084/m9.figshare.11864595.v1
title: HPOLabeler_data.zip

description: Dataset used in paper "HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank"
DOI: 10.6084/m9.figshare.11864571
title: depreciated_delete

description: test file
DOI: 10.6084/m9.figshare.11864538
title: Evaluation of accuracies of genomic predictions for carcass traits in Jeju Black cattle

description: The study aimed to evaluation of accuracies of genomic predictions for carcass traits in Jeju Black cattle.For carcass traits, data comprised of genotypes and phenotypes of total 7988 Hanwoo (Hanwoo_phenotype.txt) which were considered as reference population. Similarly, the testing population consists of 1421, 19 and 656 genotyped animal from Jeju Black cattle, Jeju Black bull and Jeju Hanwoo breed from Jeju Island (Hanwoo_JJBC.map and Hanwoo_JJBC.ped).
DOI: 10.6084/m9.figshare.11864571.v1
title: aclim_00_JunV2_2019_2.zipEBM Holsman Bering Sea climate change files

description: Multispecies Assessment model runs for the Eastern Bering Sea (run with trophic interactions). More information available at:www.fisheries.noaa.gov/resource/data/2018-climate-enhanced-multi-species-stock-assessment-walleye-pollock-pacific-cod-and<br><br>Three files included to support Rcode forHolsman et al. Ecosystem-based fisheries management forestalls climate-driven collapse. Nature Climate Change (in review).<br>Code available at: https://github.com/kholsman/EBM_Holsman_NatComm<br><br>## Input data:If running plotting code below (recommended) you will need to download the intermediate data "EBM_ceattlenew.Rdata" from figshare and place it in the main directory: "EBM_Holsman_NatComm/EBM_ceattlenew.Rdata".<br>If re-running the intermediate data analysis (not recommended) the following files will need to be downloaded unzipped and placed in the asssesment_files folder:EBM_Holsman_NatComm/data/runs/[ files]<br>## Intermediate data:Intermediate data can be found in the main EBM_Holsman_NatComm in the form of .Rdata files but can be recreated from the ADMB model using the EBM_Holsman_NatComm/assessment_scripts/README_EBM_Holsman_Analysis.pdf (not recommended; see below).<br>## Figures and tables:Final figures and tables (including illustrator files that were used to add fish icons) can be found in the **Figures** folder.<br><br>This is the main script for running analysis and plotting results and requires R version 3.5.3 (available at https://cran.r-project.org/bin/macosx/el-capitan/base/). To update the analysis using .Rdata outputs run the R() code below as is currently configured. If you want to update the intermediate data, set "readdat" to TRUE in line 80 below. The CEATTLE stock assessment is also included but requires AD Model builder (http://www.admb-project.org). To run the assessment scripts (not recommended or tested outside of macOSX) see "README_EBM_Holsman_Analysis.pdf".<br>
DOI: 10.6084/m9.figshare.11864571.v3
title: depreciated_delete

description: test file
DOI: 10.6084/m9.figshare.11864514
title: Group_Xml.zip

description: This file is a retrieval data of cervical adenocarcinoma
DOI: 10.6084/m9.figshare.11864571.v2
title: aclim_00_JunV2_2019_2.zip

description: Multispecies Assessment model runs for the Eastern Bering Sea (run with trophic interactions). More information available at:www.fisheries.noaa.gov/resource/data/2018-climate-enhanced-multi-species-stock-assessment-walleye-pollock-pacific-cod-and<br><br>Three files included to support Rcode forHolsman et al. Ecosystem-based fisheries management forestalls climate-driven collapse. Nature Climate Change (in review).<br>Code available at: https://github.com/kholsman/EBM_Holsman_NatComm<br><br>## Input data:If running plotting code below (recommended) you will need to download the intermediate data "EBM_ceattlenew.Rdata" from figshare and place it in the main directory: "EBM_Holsman_NatComm/EBM_ceattlenew.Rdata".<br>If re-running the intermediate data analysis (not recommended) the following files will need to be downloaded unzipped and placed in the asssesment_files folder:EBM_Holsman_NatComm/data/runs/[ files]<br>## Intermediate data:Intermediate data can be found in the main EBM_Holsman_NatComm in the form of .Rdata files but can be recreated from the ADMB model using the EBM_Holsman_NatComm/assessment_scripts/README_EBM_Holsman_Analysis.pdf (not recommended; see below).<br>## Figures and tables:Final figures and tables (including illustrator files that were used to add fish icons) can be found in the **Figures** folder.<br><br>This is the main script for running analysis and plotting results and requires R version 3.5.3 (available at https://cran.r-project.org/bin/macosx/el-capitan/base/). To update the analysis using .Rdata outputs run the R() code below as is currently configured. If you want to update the intermediate data, set "readdat" to TRUE in line 80 below. The CEATTLE stock assessment is also included but requires AD Model builder (http://www.admb-project.org). To run the assessment scripts (not recommended or tested outside of macOSX) see "README_EBM_Holsman_Analysis.pdf".<br>
DOI: 10.6084/m9.figshare.11864493
title: Supplementary Material for: Effectiveness of an Adjunctive Psychotherapeutic Intervention Developed for Enhancing the Placebo Effect of Antidepressants Used within an Inpatient-Treatment Program of Major Depression: A Pragmatic Parallel-Group, Randomized Controlled Trial

description: Medicine