cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cmzr4p5gp8.1
title: Data for: The impact of spatial isolation and local habitat conditions on colonization of recent forest stands by ectomycorrhizal fungi

description: In this study, we selected 17 recently established (between 18 and 45 years old) forest stands and nine ancient forest stands (continuous forest land use since at least 1775) across Flanders (Northern Belgium). Nine of the recent forest stands were adjacent to ancient forest, and 8 were isolated from ancient forests (minimum, median and maximum distance from ancient forest: respectively 219, 1901 and 7605 m). The recent forest stands were all homogeneous stands of Quercus robur planted on former agricultural land, while the tree layer of the ancient forest stands was dominated by Q. robur, with admixtures of other tree species (Acer pseudoplatanus, Betula pendula, Castanea sativa, Fagus sylvatica, Tilia sp. and Q. rubra). In each stand, a 10x10m plot was established in such a way that only Q. robur was present in and around the plot. In each plot, 10 soil cores were randomly taken with a narrow-bladed gouge auger (diameter 3 cm). The F, H and A horizon, depth 0-15 cm were collected. The samples were pooled in two composite soil samples (five soil cores pooled in one sample, resulting in two samples per plot). Roots from oak (Quercus robur) were isolated from all samples, brushed to remove remaining soil particles and 0.25 g of root per sample was used to extract DNA using the Power Soil DNA Isolation Kit. After DNA extraction, the ITS1 region of the nuclear ribosomal RNA genes was amplified using modified versions of the primer set ITS1F and ITS2. After PCR, gel electrophoresis and purification from gel, samples were pooled and sent for 250bp paired-end sequencing on an Illumina Miseq. Raw sequence data was submitted to NCBI SRA (Bioproject PRJNA477418). The demultiplexed reads provided by Genomics Core UZ Leuven were quality filtered, clustered into OTUs and assigned a taxonomy through the PIPITS pipeline. Representative sequences that could not be assigned a taxonomy at genus-level were subjected to a BLAST-search against the NCBI nucleotide database. Sequences from environmental or uncultured samples were excluded from the results and the ten best matches with maximum e-value e-100 and minimum sequence similarity of 90% (genus level) and 97% (species level) were used to assign a taxonomy. In an additional quality filtering step, OTUs represented by less than 0.01% of the reads in a sample were considered absent from that sample. Finally, the results were put in an OTU table, which was run through FUNGuild, in order to select the ectomycorrhizal OTUs from the dataset. Rarefaction curves were fitted in order to check whether they were sufficiently deep sequenced. Samples of which the rarefaction curve did not reach an asymptote were removed. If the two samples from the same plot still remained after the removal, their results were merged by averaging their read numbers. Nitrate, ammonium, plant available phosphorus, pH, gravimetric water content and organic carbon content were analyzed for each of the two composite soil samples.
DOI: 10.17909/t9p41k
title: Data used in paper "The Minimum Mass of Rotating Main Sequence Stars and its Impact on the Nature of Extended Main Sequence Turnoffs in Intermediate-Age Star Clusters in the Magellanic Clouds"
DOI: 10.25810/znb1-3k90
title: Data from "State of Open at the University of Colorado Boulder" Report

description: Data from the "State of Open at the University of Colorado Boulder" report from 2018. ZIP file includes CSV files containing data about all articles published in full open access (OA) journals by University of Colorado Boulder (CU Boulder) authors from 2012 to 2017, all articles funded by the CU Boulder Libraries Open Access Fund from 2013 to 2017, and all published data sets reported by CU Boulder faculty members in the Faculty Report of Professional Activities from 2014 to 2017.
DOI: 10.5281/zenodo.1309832
title: Pacote Experimental - Smarty Vs. Plus - Casos De Uso - Geração De Configurações

description: Pacote Experimental - SMarty vs. PLUS - Casos de Uso - Geração de Configurações
DOI: 10.5281/zenodo.1309833
title: Pacote Experimental - Smarty Vs. Plus - Casos De Uso - Geração De Configurações

description: Pacote Experimental - SMarty vs. PLUS - Casos de Uso - Geração de Configurações
DOI: 10.5517/ccdc.csd.cc1zrwby
title: CCDC 1840201: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrwcz
title: CCDC 1840202: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrwd0
title: CCDC 1840203: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrwf1
title: CCDC 1840204: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrwg2
title: CCDC 1840205: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrwh3
title: CCDC 1840206: Experimental Crystal Structure Determination

description: Related Article: William E. Christman, Travis J. Morrow, Navamoney Arulsamy, Elliott B. Hulley|2018|Organometallics|37|2706|doi:10.1021/acs.organomet.8b00348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsy7y
title: CCDC 1841221: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsy8z
title: CCDC 1841222: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsy90
title: CCDC 1841223: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyb1
title: CCDC 1841224: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/981134c684774289b0baa7c410e01f1d
title: Dendrometers during drought 2013-2016 in the Luquillo Forest Dynamics Plot

description: 96 trees of 25 species were fit with dendrometer bands in November 2012 and measured for 4 years, on average every 28 days.  Initially sampling intensity was once every three months then increase to bi-weekly.  The trees were located in the LFDP in 5 modified Gentry transects placed throughout (one in each corner and one in the center); tree tags are LFDP numbers corresponding with LFDP tree census data.  Measurements ended in November 2016. 
Fine temporal-scale monitoring of tree growth using dendrometer bands in the LFDP (2013-2016)
DOI: 10.17632/wbk8hk87r2.3
title: MC-4C: Enhancer hubs and loop collisions identified from single-allele topologies

description: Chromatin folding is increasingly recognized as a regulator of genomic processes such as gene activity. Chromosome conformation capture (3C) methods have been developed to unravel genome topology through the analysis of pair-wise chromatin contacts and have identified many genes and regulatory sequences that, in populations of cells, are engaged in multiple DNA interactions. However, pair-wise methods cannot discern whether contacts occur simultaneously or in competition on the individual chromosome. We present a novel 3C method, Multi-Contact 4C (MC-4C), that applies Nanopore sequencing to study multi-way DNA conformations of tens of thousands individual alleles for distinction between cooperative, random and competing interactions. MC-4C can uncover previously missed structures in sub-populations of cells. It reveals unanticipated cooperative clustering between regulatory chromatin loops, anchored by enhancers and gene promoters, and CTCF and cohesin-bound architectural loops. For example, we show that the constituents of the active -globin super-enhancer cooperatively form an enhancer hub that can host two genes at a time. We also find cooperative interactions between further dispersed regulatory sequences of the active proto-cadherin locus. When applied to CTCF-bound domain boundaries, we find evidence that chromatin loops can collide, a process that is negatively regulated by the cohesin release factor WAPL. Loop collision is further pronounced in WAPL knockout cells, suggestive of a “cohesin traffic jam”. In summary, single molecule multi-contact analysis methods can reveal how the myriad of regulatory sequences spatially coordinate their actions on individual chromosomes. Insight into these single allele higher-order topological features will facilitate interpreting the consequences of natural and induced genetic variation and help uncovering the mechanisms shaping our genome.
DOI: 10.6073/pasta/42a144d1ff17c76ccc15a54a2850724d
title: Dendrometers during drought 2013-2016 in the Luquillo Forest Dynamics Plot

description: 96 trees of 25 species were fit with dendrometer bands in November 2012 and measured for 4 years, on average every 28 days.  Initially sampling intensity was once every three months then increase to bi-weekly.  The trees were located in the LFDP in 5 modified Gentry transects placed throughout (one in each corner and one in the center); tree tags are LFDP numbers corresponding with LFDP tree census data.  Measurements ended in November 2016. Fine temporal-scale monitoring of tree growth using dendrometer bands in the LFDP ) (2013-2016)
DOI: 10.11577/1459500
title: Solving protein structure from sparse serial microcrystal diffraction data at a storage ring synchrotron source

description: This dataset consists of 79,992 diffraction patterns stored in cbf format. A step-by-step tutorial on the reconstruction of the Bragg intensities using the EMC algorithm (Loh & Elser 2009) is described [here](https://github.com/tl578/EMC-for-SMX/wiki). We thank the authors of Martin-Garcia et al. (2017) for their gracious access to the data.  Reduced data files: For those who would like to try an EMC reconstruction immediately, the data reduction step can be skipped by downloading the reduced data files provided by us. See [here](https://github.com/tl578/EMC-for-SMX/wiki/Data-reduction#skipping-data-reduction) for more details.
DOI: 10.15468/i5bjx9
title: Données de Mammifères marins issues d'Antabif dataportal

description: Données de Mammifères marins potentiellement présents dans le territoire français issues de l'extraction du projet ANTABIF : Van de Putte A, Youdjou N, Danis B [year accessed]. The Antarctic Biodiversity Information Facility. World Wide Web publication, available online at http://www.biodiversity.aq

Ce jeu a contribué à l'atlas des Mammifères marins publié en 2016.


Biodiversity.aq est dirigé par un Comité de pilotage international composé d'experts choisis dans le domaine de la biodiversité polaire. Ce produit est reconnu comme un produit officielle SCAR et intègre SCAR-MarBIN (Comité scientifique pour la recherche antarctique - Réseau d'information sur la biodiversité marine), avec les bases de données de la biodiversité gérées par la Division antarctique australienne, rassemblant les données des mondes marin et terrestre.
DOI: 10.5281/zenodo.1308993
title: Yaleemmlc/Admissionprediction: Predicting Hospital Admission At Emergency Department Triage Using Machine Learning - Data And Scripts

description: First release for PLOS One. Please cite original paper for all research using this dataset.
DOI: 10.5281/zenodo.1309174
title: Eu Pesticide Monitoring Data 2016

description: The file presents the results of the 2016 EU pesticide monitoring activities of EU Member States, Iceland and Norway.
description: EU,; en; xls; pesticides.mrl@efsa.europa.eu
DOI: 10.5525/gla.researchdata.636
title: Frustration vs. Prenucleation: Understanding the Surprising Stability of Supersaturated Sodium Thiosulfate Solutions
DOI: 10.6073/pasta/26e121b79ad5385f2fd069e3c9dc3f84
title: Dendrometers during drought 2013-2016 in the Luquillo Forest Dynamics Plot

description: 96 trees of 25 species were fit with dendrometer bands in November 2012 and measured for 4 years, on average every 28 days.  Initially sampling intensity was once every three months then increase to bi-weekly.  The trees were located in the LFDP in 5 modified Gentry transects placed throughout (one in each corner and one in the center); tree tags are LFDP numbers corresponding with LFDP tree census data.  Measurements ended in November 2016. Fine temporal-scale monitoring of tree growth using dendrometer bands in the LFDP ) (2013-2016)
DOI: 10.5281/zenodo.1308959
title: Smartyspem Qualitative Study Instruments And Dataset

description: SMartySPEM qualitative study instruments and dataset.
DOI: 10.5281/zenodo.1308992
title: Yaleemmlc/Admissionprediction: Predicting Hospital Admission At Emergency Department Triage Using Machine Learning - Data And Scripts

description: First release for PLOS One. Please cite original paper for all research using this dataset.
DOI: 10.5517/ccdc.csd.cc1zsyc2
title: CCDC 1841225: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyd3
title: CCDC 1841226: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyf4
title: CCDC 1841227: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyg5
title: CCDC 1841228: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyh6
title: CCDC 1841229: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zsyj7
title: CCDC 1841230: Experimental Crystal Structure Determination

description: Related Article: Mehdi Tazi, Madani Hedidi, William Erb, Yury S. Halauko, Oleg A. Ivashkevich, Vadim E. Matulis, Thierry Roisnel, Vincent Dorcet, Ghenia Bentabed-Ababsa, Florence Mongin|2018|Organometallics|37|2207|doi:10.1021/acs.organomet.8b00384
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15151/esrf-es-110423041
title: ISMB application, Biological Sciences, Birkbeck; Structural and Molecular Biology, School of Pharmacy & NPP, UCL; Biological and Chemical Sc
DOI: 10.5281/zenodo.1308958
title: Smartyspem Qualitative Study Instruments And Dataset

description: SMartySPEM qualitative study instruments and dataset.
DOI: 10.5517/ccdc.csd.cc1z5g2p
title: CCDC 1822492: Experimental Crystal Structure Determination

description: Related Article: Y.-X. Guo, H.-C. Ma, R. Bo, N. Zhao, L.-G. Zhao, J.-P. Li, H.-W. Hou|2018|Acta Crystallogr.,Sect.E:Cryst.Commun.|74|1049|doi:10.1107/S2056989018007351
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zk3yl
title: CCDC 1833710: Experimental Crystal Structure Determination

description: Related Article: Yue Wu, Xu Zhang, Liang-Jin Xu, Ming Yang, Zhong-Ning Chen|2018|Inorg.Chem.|57|9175|doi:10.1021/acs.inorgchem.8b01205
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.