cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57892/100-55
title: Supplementary materials for “From Ros to Prut: Transformations of Trypillia settlements”

description: Supplementary materials from the two-volume book “From Ros to Prut: Transformations of Trypillia settlements”, edited by Robert Hofmann, Wiebke Kirleis, Johannes Müller, Vitalii Rud, Stanislav Țerna† and Mykhailo Videiko, volume 19.1 and 19.2 in the CRC 1266 “Scales of Transformation” book series “Scales of Transformation in Prehistoric and Archaic Societies”, published with Sidestone Press. Volume 19.1 chapters with supplementary materials: Chapter 8. X-Ray computer microtomography (XRay-µCT) as a fast non-invasive technique for compositional studies of burnt prehistorical materials: results and implications from burnt daub at Maidanetske, central Ukraine Stefan Dreibrodt, Christopher Heilmann, Marta Dal Corso, Pia Bodden, Robert Hofmann, Mykhailo Videiko, Johannes Müller, Wiebke Kirleis, Astrid Holzheid Chapter 9. Archaeozoological and taphonomic examinations carried out on faunal remains from Ukrainian-German excavations at Maidanetske from 2013 to 2016 Norbert Benecke, Robert Hofmann, Mykhailo Videiko, Johannes Müller Volume 19.2 chapters with supplementary materials: Chapter 19. Radiocarbon dating: Trypillia detailed chronology, house duration estimates and the contemporaneity of earliest European mega-sites Johannes Müller, Robert Hofmann, Wiebke Kirleis, Liudmyla Shatilo, Frank Schlütz, Mykhailo Videiko, Vitalii Rud, Stanislav Țerna†, Andreea Țerna
DOI: 10.57892/100-56
title: Prozessmodelle – Schleswig-Holsteinische Landesinitiative zum Forschungsdatenmanagement

description: Die Erstellung der Prozessmodelle mithilfe von BPMN (Business Process Model and Notation) dienten der FDM-SH Community als Grundlage zur Diskussion der Erfüllung der Aufgaben der Gremien innerhalb der Landesinitiative zum Forschungsdatenmanagement (FDM-SH). Sie verdeutlichen Entscheidungs- und Kommunikationsprozesse innerhalb von FDM-SH.
DOI: 10.5061/dryad.05qfttf50
title: Implications of climate change for environmental niche overlap between five Cuscuta pest species and their two main host crop species

description: Some parasitic plants are major pests in agriculture, but how this might
 be affected by climate change remains largely unknown. In this study, we
 assessed this for five generalist holoparasitic Cuscuta species (Cuscuta
 approximata, C. australis, C. chinensis, C. europaea, C. japonica) and two
 of their main Leguminosae host crop species (Glycine max and Medicago
 sativa). For each of the five Cuscuta species and the two crop species, we
 ran MaxEnt models, using climatic and soil variables to predict their
 potential current distributions and potential future distributions for
 2070. We ran species distribution models for all seven species for
 multiple climate-change scenarios, and tested for changes in the overlap
 of suitable ranges of each crop with the five parasites. We found that
 annual mean temperature and isothermality are the main bioclimatic factors
 determining the suitable habitats of the Cuscuta species and their hosts.
 For both host species, the marginally to optimally suitable area will
 increase by 2070 for all four RCP scenarios. For most of the Cuscuta
 species, the marginally to optimally suitable area will also increase. As
 the suitable area for both the hosts and the parasites will overall
 increase, Schoener’s D, indicating the relative overlap in suitable area,
 will change only marginally. However, the absolute area of potential niche
 overlap may increase up to six-fold by 2070. Overall, our results indicate
 that larger parts of the globe will become suitable for both host species,
 but that they could also suffer from Cuscuta parasitism in larger parts of
 their suitable ranges.
DOI: 10.26165/juelich-data/sxyib6
title: ETHOS.BUILDA: Residential Building TABULA Archetype Dataset Germany

description: Zenodo
DOI: 10.5061/dryad.5x69p8d5d
title: Multiple global changes drive grassland productivity and stability: A meta-analysis

description: Temporal stability of primary productivity is the key to stable
 provisioning of ecosystem services to human beings. Yet, the effects of
 various global changes on grassland stability remain ambiguous. Here, we
 conducted a comprehensive meta-analysis based on 1,070 multi-year paired
 observations from 173 studies, to examine the impacts of various global
 changes on productivity, community stability and plant diversity of
 grasslands on a global scale. The global change drivers include nitrogen
 (N) addition, phosphorus (P) addition, N & P addition,
 precipitation increase, precipitation decrease, elevated CO2, and warming.
 Global change drivers generally had stronger impacts on grassland
 productivity than on temporal stability, except for precipitation changes.
 Community temporal stability was reduced by N addition, N & P
 addition, and precipitation decrease, but was increased by precipitation
 increase and remained unchanged under P addition, elevated CO2, and
 warming. In addition, species richness decreased under N addition, N
 & P addition, and precipitation decrease. At the plant functional
 group level, N & P addition reduced grasses’ stability and
 precipitation increase enhanced forbs’ stability. Nutrient additions
 decreased community stability via increasing the inter-annual variation
 more than the mean of primary productivity, while precipitation changes
 mainly affected community temporal stability via changing mean
 productivity. The negative impacts of global change drivers (i.e. N
 & P addition, warming) on community temporal stability increased
 with the degree of species loss, but decreased with increasing stability
 of grasses. Moreover, the negative impacts of nutrient addition and
 precipitation decrease on community stability was lessened while the
 positive effect of precipitation increase on community stability was
 enhanced in grasslands with higher historical precipitation variability,
 greater soil fertility, and longer experimental duration. Synthesis. Our
 findings demonstrate that N-based nutrient additions and drought
 destabilise grassland productivity, while precipitation increase enhances
 community stability. Impacts of global changes on community productivity
 and stability are mediated by species richness, plant functional group,
 site-specific environmental conditions (i.e. climate, soil), and
 experimental duration, which deserve more attention in grassland
 management practices under future global change scenarios.
DOI: 10.5061/dryad.ksn02v76k
title: Marine and freshwater planktonic ciliates differ in their thermal performance

description: Predicting the performance of aquatic organisms in a future warmer climate
 depends critically on understanding how current temperature regimes affect
 the organisms’ growth rates. Using a meta-analysis for published
 experimental data, we calculated the activation energy (Ea) to
 parameterize the thermal sensitivity of marine and freshwater ciliates,
 major players in marine and freshwater food webs. We hypothesized that
 their growth rates increase with temperature but that ciliates dwelling in
 the immense, thermally stable ocean are closely adapted to their ambient
 temperature and have lower Ea than ciliates living in smaller, thermally
 more variable freshwater environments. The Ea was in the range known from
 other taxa but significantly lower for marine ciliates (0.390 ± 0.105 eV)
 than for freshwater ciliates (0.633 ± 0.060 eV), supporting our
 hypothesis. Accordingly, models aiming to predict the ciliate response to
 increasing water temperature should apply the environment-specific
 activation energies provided in this study. 
description: We used the Web of Science to
 collect experimentally obtained data for ciliate growth rates which we
 accessed the last time on 15th Oct 2021. The keywords applied were
 “ciliate*” and “growth rate*”. From the search results, we first selected
 references that contained further keywords in the title and/or its
 abstract such as “plankton”, “aquatic systems”, “experiment”,
 “free-living” and variations of the terms and immediately discarded titles
 and abstracts where terms as “in situ”, “benthos”, “terrestrial”,
 “parasitic” or “rumen” and their synonyms and variations were mentioned.
 Then, we read the entire references that passed the first selection round
 to determine which would finally be included in our dataset. We only
 included papers that focused on planktonic ciliate growth rates under
 experimental conditions assuming optimal growth (i.e., saturating food
 concentration) and reported the temperature of the experiments. In those
 studies that measured growth rates at multiple temperatures, the growth
 rate at each temperature was included in our data set.
 Occasionally, growth rate and volume data had to
 be extracted from figures, using DataThief III (Tummers 2006), and – when
 needed and possible – we sought clarification directly from the authors.
 In cases where the volume was not measured in a study or provided by the
 authors, estimates were made based on similar work (Supplement 1, Table
 S1). The analyses covered a temperature range from 5 to 30 °C, for which
 data from both marine and freshwater ciliate taxa were available.
 Eventually, these selection criteria yielded 57 studies: 40 marine, 17
 freshwater, which provided data on 58 taxa (42 from marine water, 16 from
 freshwater).
DOI: 10.57892/100-74
title: Cucuteni-Trypillia time series data on settlement size, location, house use-life, and ratio between houses and institutions
DOI: 10.57892/100-76
title: “Like, comment, subscribe” – Perception of acoustic-prosodic features of content creators' charismatic speech on YouTube

description: These data belong to a dissertation which investigates the influence of different acoustic-prosodic features on the perception of charismatic speech of YouTubers (i.e., creators of video content on YouTube who star in their own videos). Charisma – if seen as skill used to draw in and retain an audience – is a major factor in success online, and part of charisma is transmitted via the voice. A selection of voice characteristics (e.g., pitch, tempo, emphasis, pauses) are investigated in three perception studies to find out how certain features should be configured to be perceived as charismatic (and authentic, enthusiastic, likable, and persuasive as related attributes) in the context of YouTube. The speakers in the sample were English speakers from England and North America, while all listeners were from England.
DOI: 10.57892/100-77
title: Supplementary Data for: The monopolisation of violence: booms and busts of prehistoric violence linked to social Inequalities

description: Occurrence of trauma in prehistoric graves in Central Europe
DOI: 10.5061/dryad.4f4qrfjf4
title: Temporal trends in the spatial bias of species occurrence records

description: Large-scale biodiversity databases have great potential for quantifying
 long-term trends of species, but they also bring many methodological
 challenges. Spatial bias of species occurrence records is well recognized.
 Yet, the dynamic nature of this spatial bias - how spatial bias has
 changed over time - has been largely overlooked. We examined the spatial
 sampling bias of species occurrence records within multiple biodiversity
 databases in Germany and tested whether spatial bias in relation to land
 cover or land use (urban and protected areas) has changed over time. We
 focused our analyses on urban and protected areas as these represent two
 well-known correlates of sampling bias in biodiversity datasets. We found
 that the proportion of annual records from urban areas has increased over
 time while the proportion of annual records within protected areas has not
 consistently changed. Using simulations, we examined the implications of
 this changing sampling bias for estimation of long-term trends of species’
 distributions. When assessing biodiversity change, our findings suggest
 that the effects of spatial bias depend on how it affects sampling of the
 underlying land-use change drivers affecting species. Oversampling of
 regions undergoing the greatest degree of change, for instance near human
 settlements, might lead to overestimation of the trends of specialist
 species. For robust estimation of the long-term trends in species’
 distributions, analyses using species occurrence records may need to
 consider not only spatial bias, but also changes in the strength of
 spatial bias through time.
description: The data were downloaded from multiple species occurrence record
 databases: GBIF, Naturgucker and
 observation.org See the README file for information on
 the processing and analysis Code for the simulations is
 also provided.
DOI: 10.57892/100-79
title: Multi-layer connection of C. elegans

description: Dataset Descriptions: Edge list of connections between neurons (nodes) for electrical and chemical communication in the nervous system of Caenorhabditis elegans (C. elegans) Methodology Used: The neuron and connectivity data can be found on WormAtlas (http://www.wormatlas.org). The transmitter and receptor data are partly taken from B. Bentley et al. (PLoS Comput. Biol. 12, e1005283 (2016), https://doi.org/10.1371/journal.pcbi.1005283) and have been supplemented by own work. The data set combines connectome data provided by WormAtlas (http://www.wormatlas.org) and Bentley et al. (PLoS Comput. Biol. 12, e1005283 (2016), https://doi.org/10.1371/journal.pcbi.1005283). We consolidated the two data sources, which have been used in the publication: T. Maertens, E. Schöll, J., P. Hövel: Multilayer network analysis of C. elegans: Looking into the locomotory circuitry, Neurocomputing 427, 238 (2021), https://doi.org/10.1016/j.neucom.2020.11.015 and a more recent manuscript (submitted to EPJB) available as preprint D. Sharma, M. Renz, P. Hövel: Discovering Motifs to Fingerprint Multi-Layer Networks: a Case Study on the Connectome of C. Elegans, arXiv:2408.13263 (https://arxiv.org/abs/2408.13263). The is one csv file for each layer (electrical, Acetycholine, Glutamate, gamma-Aminobutyric acid, Monoamine, Peptide) with the following columns: Pre : presynaptic neuron (numerical identifier), Post: postsynaptic neuron (numerical identifier), Type: electrical or chemical connection, Layer: layer type, Pre : presynaptic neuron (name, 3-4 letter abbreviation), Post: postsynaptic neuron (name, 3-4 letter abbreviation) For more information on the neuron name and function, see https://www.wormatlas.org/neurons/Individual%20Neurons/Neuronframeset.html
DOI: 10.57892/100-80
title: Supplement data to the manuscript: Inhibiting ADAM17 Enhances the Efficacy of Olaparib in Ovarian Cancer Spheroids
DOI: 10.57892/100-81
title: Geophysical data: Horsens GPR (Kettle Hole Investigation) 2017 to 2018

description: We investigated a small kettle hole near the township of Tyrsted, south of Horsens (Denmark) with the aim to determine the extension and depth of this feature using geophysical methods. A former excavation at Tyrsted carried out from the Horsens Museum in 2017 at a neighboring site revealed Late Palaeolithic flint of the Bromme type and worked reindeer antlers. This connection in a Late Glacial horizon is unique not only in a Danish context and it can help to improve and clarify the dating of the Bromme culture. We used ground penetrating radar (GPR), electromagnetic induction (EMI) and electrical resistivity tomography (ERT) to estimate the extension of the kettle hole (~16 m × 25 m). Shear wave reflection and refraction seismics (SH Seismics) were able to detect the bottom sediment of the former lake at about ~5 m depth. Furthermore, a seismic event at about 1.30 m depth is visible which can be associated to the transition between the Allerød and Younger Dryas sediment making the detection of the Bromme horizon possible. After the non-invasive investigation, a location for an open excavation has been chosen in a way to groundtruth the geophysical results allowing the direct comparison with the stratigraphy. These results allow the archaeologists to identify key excavation areas focused on the investigation of the Allerød and Younger Dryas layers in a way to improve the dating information about the Bromme horizon collected so far.
DOI: 10.57892/100-82
title: Geophysical data: Duvensee GPR 2016

description: We investigate the landscape development of the early Mesolithic hunter-gatherer sites of Duvensee performing a ground-penetrating radar (GPR) Survey. We present for the first time a three-dimensional (3D) reconstruction of the palaeoenvironment of 63 ha covering subarea of the former lake during the Mesolithic. The archaeological aims focus on detecting the location of former islands hosting hunter-gatherers settlements and on reconstructing the ancient landscape development for understanding prehistoric land use. Clusters of Mesolithic camps have been found located on small sand hills that formed islands in the prehistoric lake. For this environment, we present depth maps of the three most important sedimentary facies interfaces of ancient Lake Duvensee. Stratigraphic information from the corings enabled us to create a 3D model of the spatio-temporal development of the Duvensee bog. The locations of the islands and their estimated dive-up times agree with the spatio-temporal pattern of the previous archaeological finds. The model shows where hunter-gatherers could settle and move from one island to another following the shorelines of the overgrowing lake.
DOI: 10.57892/100-83
title: Geophysical data: GPR Data Dümmer 2020

description: Ground penetrating radar (GPR) investigation at Hunte 4 in the Dümmer region with the focus on a landscape reconstruction where Neolithic settlements have been found. This region is characterized by extensive wetlands on the southern border of the Northern Lowland and has been the subject of several research projects on Mesolithic and Neolithic sites since the last century. In 2020, new research was carried out at this site, which, through the integration of archaeology, geophysics, and palynology, reconstructed the surrounding landscape.Lake Dümmer probably formed as a thermokarst lake at the end of the last ice age. Several sites are known along the lakeshore, ranging from the late Palaeolithic to the Bronze Age and possibly into the Iron Age and early Middle Ages. The prehistoric sites are found at different distances from the present day lakeshore.
DOI: 10.5061/dryad.83bk3j9tq
title: Urine uromodulin as a biomarker of kidney tubulointerstitial fibrosis

description: Background and objectives   Uromodulin, produced exclusively in
 the kidney’s thick ascending limb, is a biomarker of kidney tubular
 health. However, the relationship between urine uromodulin and
 histological changes in kidney tubulointerstitium has not been
 characterized. In this study, we test the association of urine uromodulin
 with kidney histological findings in humans and mice.  Design,
 setting, participants, and measurements   We investigated the
 independent association of urine uromodulin measured at the time of kidney
 biopsy with histological features in 364 participants at two academic
 medical centers from 2015-2018 using multivariable linear regression
 models. This relationship was further examined by comparison of uromodulin
 staining in murine models of kidney fibrosis and repair. 
   Results   We found urine uromodulin to be correlated
 with serum creatinine (rho = -0.43, P&lt;0.001), bicarbonate (0.20,
 P&lt;0.001) and hemoglobin (0.11, P=0.03) at the time of biopsy, but
 not with urine albumin (-0.07, P=0.34). Multivariable models controlling
 for pre-biopsy glomerular filtration rate, serum creatinine at biopsy, and
 urine albumin showed higher uromodulin to be associated with lower
 severity of interstitial fibrosis/tubular atrophy (IF/TA) and
 glomerulosclerosis [IF/TA -3.5 (-5.7, -1.2)% and glomerulosclerosis -3.3
 (-5.9, -0.6)% per 2-fold difference in uromodulin]. However, when both
 IF/TA and glomerulosclerosis were included in multivariable analysis, only
 IF/TA was independently associated with uromodulin [IF/TA -2.5 (-4.6,
 -0.4)% and glomerulosclerosis -0.9 (-3.4, 1.5)% per 2-fold difference in
 uromodulin]. In mouse kidneys, uromodulin staining was found to be lower
 in the fibrotic model than in normal or repaired models. 
 Conclusions Higher urine uromodulin is independently associated with lower
 tubulointerstitial fibrosis in both human kidney biopsies and a mouse
 model of fibrosis.
DOI: 10.57892/100-84
title: Geophysical Data (GPR, ERT, Seismic) Duvensee 2019

description: We present an integrated approach of multi-method geophysical sounding and local soil sampling for differentiate, and map organic sediments. Our study is based on ground-penetrating radar (GPR), electrical resistivity tomography (ERT) and shear-wave seismic (SH seismic) profiling applied to sediments of the former Lake Duvensee (northern Germany), nowadays a bog. The bog is embedded in low conductive glacial sand and is characterized by layers of different gyttja sediments (detritus and calcareous). The present study was conducted in order to identify the bog morphology and the thickness of the peat body and lake sediments, in order to understand the basin evolution. To validate the geophysical results, derived from surface measurements, drilling, soil analyses as well as borehole guided wave analysis of electromagnetic waves and Direct-Push (DP-EC) have been carried out and used for comparison. It turned out that each method can distinguish between sediments that differ in grain size, particularly between peat, lake sediments (gyttjas and mud) and basal glacial sand deposits. GPR is even able to separate between strongly and weakly decomposed peat layers, which is also clear considering resistivity variations in the ERT computation. From the association between geophysical properties and sediment analysis (e.g., water content and organic matter) different gyttjas were distinguished (coarse and fine) and seismic velocity was correlated to bulk density. Moreover, GPR and SH-wave seismics present different resolutions, confirming that the latter allows measurements, which are more focused on determining the extension of basal sand deposits, the depth of which is diffcult to reach with GPR. Representative values of electrical resistivity, dielectric permittivity, and shear wave velocity have been determined for each sediment type and are therefore available to complete the investigation of wetland environments. Fine grained lake sediments were diffcult to differentiate by the applied methods.