cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xt9quj
title: Occurrence Download

description: A dataset containing 3804899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida, Lindavia intermedia)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3804899 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020070-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5kqdt
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cheniella tenuiflora",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 992 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020127-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hx4drk
title: Occurrence Download

description: A dataset containing 333467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium molle",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 333467 records from 2326 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020089-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dfyze
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001872-250711103210423/datasets/export for details.
DOI: 10.15468/dl.zyne3f
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Boschniakia rossica"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001874-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scmvha
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD2469"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001873-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj3q2y
title: Occurrence Download

description: A dataset containing 3021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calidris himantopus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 3021 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001875-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akzgke
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001876-250711103210423/datasets/export for details.
DOI: 10.15468/dl.f4k9qg
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphredoderus sayanus gibbosus"
 ]
}

 The dataset includes 65 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001877-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vpmb4
title: Occurrence Download

description: A dataset containing 9228 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acromyrmex"
 ]
}

 The dataset includes 9228 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001878-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3t9d6b
title: Occurrence Download

description: A dataset containing 7331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phalaropus lobatus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 7331 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001881-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkkdry
title: Occurrence Download

description: A dataset containing 16416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phalaropus lobatus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 16416 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001880-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15867052
title: Data for: Cunha Neto et al. "Rampant convergent evolution of vascular oddities and a synnovation characterize the rapid radiation of Paullinieae lianas".

description: Supplemental Tables

Table S1. Accession database. Plant specimens used in the Paullinieae phylogeny, including their taxonomic classifications, collection details, and herbarium information. 

Table S3. Sequencing and assembly statistics. 

Table S4. Anatomical database. Detailed anatomical data for species in the Paullinieae tribe and outgroups, focusing on stem development and vascular variants. The species list included in this database also comprises the curated list of species in Paullinieae by Dr. Pedro Acevedo-Rodríguez, as well as the total number of species accepted in this study.

 

Tree Inference data files

astral.tre



This is the species tree infered through ASTRAL with 351 exon gene trees. 


iqtree.tre



This is the maximum likelihood tree with bootstrap support at the nodes with the tips assigned their species names (e.g., Paullinia_atrolineata_b)


pau_333s_351g_partitions.contree



This is the maximum likelihood tree with bootstrap support at the nodes with the sample ID numbers (PAU24)


pau_333s_351g.fasta



This is the concatenated alignment of 351 genes across 333 samples. The sample ID names are still present.


pau_333s_351g_partitions



This is the partition gene file, showing the coordinates of each of 351 genes across the concatenated alignment.


ChangeSampleNames_iqtree.sh



This script uses the function “sed” to find and replace sample ID (e.g., PAU24) in pau_333s_351g_partitions.contree species names (e.g., “Serjania_atrolineata_b”) in a file called iqtree.tre




 


CI-combined_chronograms.tre



This is the chronogram infered by treePL, by time calibrating 100 trees with a constrained topology but varying branch lengths.
DOI: 10.5281/zenodo.15867051
title: Data for: Cunha Neto et al. "Rampant convergent evolution of vascular oddities and a synnovation characterize the rapid radiation of Paullinieae lianas".

description: Supplemental Tables

Table S1. Accession database. Plant specimens used in the Paullinieae phylogeny, including their taxonomic classifications, collection details, and herbarium information. 

Table S3. Sequencing and assembly statistics. 

Table S4. Anatomical database. Detailed anatomical data for species in the Paullinieae tribe and outgroups, focusing on stem development and vascular variants. The species list included in this database also comprises the curated list of species in Paullinieae by Dr. Pedro Acevedo-Rodríguez, as well as the total number of species accepted in this study.

 

Tree Inference data files

astral.tre



This is the species tree infered through ASTRAL with 351 exon gene trees. 


iqtree.tre



This is the maximum likelihood tree with bootstrap support at the nodes with the tips assigned their species names (e.g., Paullinia_atrolineata_b)


pau_333s_351g_partitions.contree



This is the maximum likelihood tree with bootstrap support at the nodes with the sample ID numbers (PAU24)


pau_333s_351g.fasta



This is the concatenated alignment of 351 genes across 333 samples. The sample ID names are still present.


pau_333s_351g_partitions



This is the partition gene file, showing the coordinates of each of 351 genes across the concatenated alignment.


ChangeSampleNames_iqtree.sh



This script uses the function “sed” to find and replace sample ID (e.g., PAU24) in pau_333s_351g_partitions.contree species names (e.g., “Serjania_atrolineata_b”) in a file called iqtree.tre




 


CI-combined_chronograms.tre



This is the chronogram infered by treePL, by time calibrating 100 trees with a constrained topology but varying branch lengths.
DOI: 10.15468/dl.tzrj3k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001882-250711103210423/datasets/export for details.
DOI: 10.15468/dl.bkcy89
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD2471"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001883-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnztys
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stachys sieboldii malacotricha"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001884-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfpuh4
title: Occurrence Download

description: A dataset containing 1320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phalaropus lobatus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 1320 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001885-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbvyd4
title: Occurrence Download

description: A dataset containing 1248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phalaropus lobatus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 1248 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001886-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azshp4
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oncorhynchus aguabonita)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 355 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001887-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4yt7b
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD2470"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001888-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkwsgr
title: Occurrence Download

description: A dataset containing 59767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atropa belladonna, Attalea cohune, Averrhoa bilimbi, Averrhoa carambola, Axonopus compressus, Ayapana triplinervis, Bambusa bambos, Barleria cristata, Barleria lupulina, Barleria prionitis)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59767 records from 830 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001871-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33xp5p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001889-250711103210423/datasets/export for details.
DOI: 10.15468/dl.36b3ny
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphyocharax anisitsi"
 ]
}

 The dataset includes 696 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001890-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhzmt2
title: Occurrence Download

description: A dataset containing 3599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus tenuis"
 ]
}

 The dataset includes 3599 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001891-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scvfv3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001892-250711103210423/datasets/export for details.
DOI: 10.15468/dl.3ayjca
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5888"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001893-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zm2bd4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001895-250711103210423/datasets/export for details.
DOI: 10.15468/dl.bzeezu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoxinopsis typicus"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001896-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4cbrg
title: Occurrence Download

description: A dataset containing 367137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phalaropus lobatus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 367137 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001879-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89rmd6
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adesmia radicifolia"
 ]
}

 The dataset includes 29 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001897-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un2bwe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of ()",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001898-250711103210423/datasets/export for details.