cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21606732.v1
title: Supplementary Table

description: Supplementary tables for <strong>Dynamic fecal microenvironment properties enable predictions and understanding of peripartum blood oxidative status and non-esterified fatty acids in dairy cows. </strong>
DOI: 10.25919/mvxj-zk05
title: Parkes observations for project P1054 semester 2023APRS_05

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Twenty sources have been discovered in targeted observations of Fermi unidentified point sources, one in association with a Supernova Remnant, 13 in the Magellanic Clouds, 71 in Globular Clusters and 74 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries.
DOI: 10.6084/m9.figshare.23583600
title: Additional file 1 of Multivariate analysis reveals that BVDV field isolates do not show a close VN-based antigenic relationship to US vaccine strains

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23583600.v1
title: Additional file 1 of Multivariate analysis reveals that BVDV field isolates do not show a close VN-based antigenic relationship to US vaccine strains

description: Supplementary Material 1
DOI: 10.15485/1686146
title: Data from: "Growth strategies and threshold responses to water deficit modulate effects of warming on tree seedlings from forest to alpine"

description: This data package contains data that were used to support conclusions drawn in “Growth strategies and threshold responses to water deficit modulate effects of warming on tree seedlings from forest to alpine”, by Lazarus, Castanha et al. 2017. Data were collected at field sites within the Alpine Treeline Warming Experiment (ATWE) on Niwot Ridge, Colorado, USA, and at the U.S. Geological Survey laboratory located in Boise, Idaho. This archive contains comma-separated-values (.csv) files, as well as the same files in Microsoft Excel (.xlsx) format, which can be opened by either Microsoft Excel, R, or any simple text editor program. There are two types of geospatial data files: .kml and ESRI shapefiles (.shp). The kml files contain placemarks, which can be opened by Google Earth, or Google Maps. The ESRI shapefiles can be opened by any geographic information system application that can read shapefiles, including ESRI's entire ArcGIS suite, and QGIS. We asked whether and how tree species differences in response to water deficit relates to their establishment along the gradient from forest to alpine. To do this, we compared growth and moisture stress responses in first-year seedlings of three species planted in common gardens subject to a factorial of heating and watering treatments below, at, and above tree line. This combination of an elevation gradient alongside warming and watering treatments enabled us to observe species differences in seedling responses to a broad set of climatic conditions.Entire seedlings were harvested at c. 3- and again at 9 weeks of age following germination/emergence in the experimental plots, and we then measured dry mass (DM) of above and belowground parts, root length, root mass fraction (RMF), relative growth rates (RGRs) from seed to 3 weeks and from 3 to 9 weeks, turgor-loss point (TLP), and photosynthetic WUE (as δ13C). Also included in this dataset (but not described in the manuscript) are measures of specific leaf area (SLA) and other variables generated by pressure-volume curves (saturated water content, osmotic potential at full turgor, elastic modulus).
DOI: 10.15485/1706730
title: Data from: "Soil moisture mediates alpine life form and community productivity responses to warming"

description: This dataset contains values that were used to support conclusions drawn in the publication “Soil moisture mediates alpine life form and community productivity responses to warming”, originally published in 2016 by Winkler et al. All data were collected in the alpine site of the Alpine Treeline Warming Experiment (ATWE), located on Niwot Ridge, in the Front Range of the Colorado Rocky Mountains, USA. The file types in this archive include comma-separated-values (.csv) files, and two types of geospatial files: .kml and shapefiles (.shp). The csv files can be opened by R, Microsoft Excel, or any simple text editor software. The geospatial files can be opened by Google Earth/Google Maps, and the ESRI shapefiles can be opened by geographic information systems softwares that can read shapefiles, including ESRI’s ArcGIS Desktop suite, and QGIS.Climate warming is expected to alter primary production and community composition in alpine systems around the globe. Whether production will increase in response to warming in the absence of additional precipitation remains underexplored. We experimentally warmed an alpine plant community on Niwot Ridge, Colorado to test whether warming increases or decreases productivity of multiple plant life form groups and the entire plant community. We also provided supplemental water to a subset of plots to alleviate potential drying effects of warming. We predicted alpine community above-ground productivity would increase in response to warming only when combined with supplemental water to limit soil drying. We also predicted plant life form groups would vary in their responses and would like buffer changes in community productivity.
DOI: 10.15485/1756714
title: Data from: "Snowmelt Timing Regulates Community Composition, Phenology, and Physiological Performance of Alpine Plants"

description: This archive contains data that were used to support conclusions drawn in “Snowmelt Timing Regulates Community Composition, Phenology, and Physiological Performance of Alpine Plants”, by Winkler et al., 2018. Data were collected throughout the 2009 growing season on Niwot Ridge, Colorado, before the site became part of the Alpine Treeline Warming Experiment (ATWE). Geospatial files are included in this archive to provide additional locational context. The files in this data package consist of five comma-separated-values (.csv) files, one keyhole markup language (.kml) file, and two ESRI shapefiles (.shp). The .csv files can be opened by Microsoft Excel, R, or any simple text-editor software, such as TextEdit (MacOS) or Notepad (Windows). The .kml files can be opened by Google Maps or Google Earth, and the .shp files are compatible with GIS softwares such as ESRI’s ArcGIS suite, and QGIS.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------We asked how plant community composition, phenology, plant water relations, and photosynthetic gas exchange of alpine-restricted and wide-ranging species differ in their responses to a ca. 40-day snowmelt gradient in the Colorado Rocky mountains (Lewisia pygmaea, Sibbaldia procumbens, and Hymenoxys grandiflora were alpine-restricted and Artemisia scopulorum, Carex rupestris, and Geum rossii were wide-ranging species). To do this, we measured percent cover and flowering initiation across 20 plots varying in snowmelt timing and measured net photosynthesis and stomatal conductance in multiple individuals of each target species in these plots in 2009.As hypothesized, species richness and foliar cover increased with earlier snowmelt, due to a greater abundance of wide-ranging species present in earlier melting plots. Flowering initiation occurred earlier with earlier snowmelt for 12 out of 19 species analyzed, while flowering duration was shortened with later snowmelt for six species (all but one were wide ranging species). We observed &gt;50% declines in net photosynthesis from July to September as soil moisture and plant water potentials declined. Early-season stomatal conductance was higher in wide-ranging species, indicating a more competitive strategy for water acquisition when soil moisture is high. Even so, there were no associated differences in photosynthesis or transpiration, suggesting no strong differences between these groups in physiology.
DOI: 10.15485/1771221
title: Data from: "Colonisation of the alpine tundra by trees: alpine neighbours assist late-seral but not early-seral conifer seedlings"

description: This archive contains data used to support conclusions made in “Colonisation of the alpine tundra by trees: alpine neighbours assist late-seral but not early-seral conifer seedlings”, by Jabis et al., 2020. Data were collected in the alpine field location of the Alpine Treeline Warming Experiment (ATWE), on Niwot Ridge, in the Front Range of the Colorado Rocky Mountains, USA.This package includes survivorship and physiology data for limber pine (Pinus flexilis), Engelmann spruce (Picea engelmannii), and Rocky Mountain snowlover (Chionophila jamesii). Site climate data such as soil moisture and temperature are also included. This data package contains ten comma-separated-values (.csv) files, and two rich-text-format (.rtf) files all compressed within one folder named “Neighbor_data_repository.zip”. Both file types can be opened by text-edit softwares such as TextEdit (Mac) and Notepad (Windows). The files are also compatible with analyses softwares such as R. .csv files can also be opened by Microsoft Excel. Two geospatial datasets are also included in this archive: one keyhole markup language (.kml) file with four points marking the corners of the study site, and a compressed file containing two ESRI shapefiles (.shp). The .kml files can be opened with Google Earth or Google Maps, and the shapefiles can be opened using any geographic information system applications, including the entire ArcGIS suite, and QGIS. -------------------------------------------------------------------------------------------------------------------------------------------------------The elevation mountain treeline is expected to shift upward with climate warming, and seed germination and seedling survival are critical local controls on treeline expansion. Neighboring alpine plants, either through competition for resources or through altering the microclimate, can also affect seedling emergence and survival. We asked whether establishing tree seedlings and an alpine herb are similarly sensitive to alpine plant neighbours under ambient and altered climate. We imposed active heating, watering, and neighbor removal experiments for emerging conifer seedlings and an alpine herb.We compared target plant survival, photosynthetic efficiency, and water use efficiency under ambient and experimental conditions. Picea engelmannii seedlings showed lower survival compared with Pinus flexilis three weeks following neighbour removal, and after 1 year only survived in watered plots. Pinus seedlings responded to neighbour removal by lowering the quantum yield of photosynthesis (ϕPSII). Contrary to expectations from the stress gradient hypothesis, survival was reduced without neighbours near the low-elevation range limit of Chionophila jamesii.
DOI: 10.15485/1773006
title: Data from: "Warming of alpine tundra enhances belowground production and shifts community towards resource acquisition traits"

description: This archive contains data used to draw conclusions in “Warming of alpine tundra enhances belowground production and shifts community towards resource acquisition traits”, by Yang et al. 2020. Data were collected on Niwot Ridge, in an alpine meadow within the Alpine Treeline Warming Experiment (ATWE) field sites in Colorado, USA. Samples were also processed in the U.S. Geological Survey Forest and Rangeland Ecosystem Science Center, in Boise, Idaho. File formats in this archive include comma-separated values (.csv), portable document format (.pdf), Microsoft Excel (.xlsx), and two types of geospatial files: keyhole markup language (.kml), and ESRI shapefiles (.shp). Leaf scans are .jpg images, and root scans are .tiff/.tif images.The .csv files can be opened using R, Microsoft Excel, or any simple text-editing software such as TextEdit and Notepad. Microsoft Excel files can be opened using Microsoft Excel, and .pdf files can be opened with Adobe Acrobat Reader, Preview, or other compatible programs. Scanned images can be opened using any photo and/or picture viewing software.The .kml file can be opened using Google Earth and Google Maps, and the shapefiles can be opened by any programs compatible with shapefiles, such as the ArcGIS Desktop suite, and QGIS.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Measures of belowground net primary productivity (BNPP) are required to understand whether aboveground net primary production (ANPP) changes reflect changes in allocation or are indicative of a whole plant NPP response. Plant functional traits provide a key way to scale from the individual plant to the community level, and provide insight into drivers of NPP responses to environmental change. We used infrared heaters to warm an alpine plant community at Niwot Ridge, Colorado, and applied supplemental water to compensate for soil water loss induced by warming. We measured ANPP, BNPP, and leaf and root functional traits across treatments after 5 years of continuous warming. Community-level ANPP and total NPP (ANPP + BNPP) did not respond to heating or watering, but BNPP increased in response to heating. Heating decreased community-level leaf dry matter content and increased total root length, indicating a shift in strategy from resource conservation to acquisition in response to warming.
DOI: 10.15485/1828795
title: Data from: "Responses of alpine plant communities to climate warming"

description: The Alpine Treeline Warming Experiment (ATWE) was a common garden-climate manipulation experiment set up across an elevation gradient in Niwot Ridge, in the Front Range of the Colorado Rocky Mountains, USA. The project sought to learn more about the effects of climate change on alpine and subalpine ecosystems, namely tree species ranges and alpine plant communities. Plots were experimentally manipulated using infrared heaters set up to warm plots to temperatures comparable to those projected for the year 2100. Other treatments include watering, and a combination of watering and heating. Three sites were set up at different elevations to study three tree species, with the highest-elevation “Alpine” site ( ~3540 m) containing twenty additional plots to study alpine plant communities. Data in this package originate from these unseeded alpine plots. To evaluate soil nitrogen availability given site treatments, resin bags were deployed, removed, and extracted annually to produce ammonium and nitrate/nitrite readings.--------------------------------------------------Data files within this archive are in comma-separated-values (.csv) and Microsoft Excel (.xlsx) formats. .csvs can be read and opened by Microsoft Excel, R, or any other simple text-editing software, and .xlsx files can be opened using Microsoft Excel. Geospatial data associated with this package are in .kml and ESRI shapefile (.shp) formats. .kml files can be read using Google Earth or Google Maps, and shapefiles can be read with any software compatible with the file type, such as QGIS or ESRI’s ArcMap suite.Data files in this package - excluding “Winkler_2019_ALPO_inorganic_N_allyears.csv” - are provided in both Microsoft Excel and .csv formats, for added accessibility and flexibility in workflows. File contents are identical.
DOI: 10.48366/r599390
title: Comparison on Representation and Reasoning for Semantic Knowledge Retrieval in Agriculture

description: This comparison presents representations and reasoning tools adopted for the semantic knowledge retrieval of knowledge on crop pest and disease management
DOI: 10.5439/1986265
title: iapmfr (b1)

description: The In Situ Aerosol Profiles (IAP) campaign is a joint effort between the Atmospheric Radiation Measurement (ARM) user facility and the Climate Monitoring and Diagnostics Laboratory (CMDL) of the U.S. National Oceanic and Atmospheric Administration (NOAA). The objective is to obtain a statistically significant data set of the vertical distribution of aerosol properties (e.g., light scattering and absorption, particle chemistry) by flying a Cessna light aircraft over the SGP site. By using a similar aerosol instrument package as the aerosol observing system (AOS) at SGP, the aircraft will fly level legs at altitudes between 500 m and 3500 m several times per week. See the IAP website for more information.
DOI: 10.5439/1986266
title: iapmfr (a0)

description: The In Situ Aerosol Profiles (IAP) campaign is a joint effort between the Atmospheric Radiation Measurement (ARM) user facility and the Climate Monitoring and Diagnostics Laboratory (CMDL) of the U.S. National Oceanic and Atmospheric Administration (NOAA). The objective is to obtain a statistically significant data set of the vertical distribution of aerosol properties (e.g., light scattering and absorption, particle chemistry) by flying a Cessna light aircraft over the SGP site. By using a similar aerosol instrument package as the aerosol observing system (AOS) at SGP, the aircraft will fly level legs at altitudes between 500 m and 3500 m several times per week. See the IAP website for more information.
DOI: 10.5439/1986267
title: 180iopsndgv1varana (c1)

description: 180iopsndgv1varana
DOI: 10.5439/1986268
title: aosccnavg (c1)

description: aosccnavg
DOI: 10.5439/1986269
title: 1290rwpwindcon (a1)

description: The radar wind profiler/radio acoustic sounding system (RWP/RASS), available in 915-MHz (for U.S. deployments) and 1290-MHz (for foreign deployments), measures wind profiles and backscattered signal strength between (nominally) 0.1 km and 5 km and virtual temperature profiles between 0.1 km and 2.5 km. However, ARM no longer operates the RASS portion. The RWP transmits electromagnetic energy into the atmosphere in as many as five directions (four tilted in opposing vertical planes and on vertical) and measures the strength and frequency of backscattered energy. Calculation of the Doppler shift of the returned signal allows calculation of the atmospheric wind profile.
DOI: 10.18141/1986291
title: NEWTS Well Summary by Hydrologic Regions and Subbasins in the U.S.

description: Oil and gas well production data (2000-2022), including water production and injection, as well as summary information (e.g., well count by status, total vertical depth statistics, etc.) spatially summarized by Watershed Boundary Dataset's (WBD) region (Hydrologic Unit Code (HUC) 2) and subbasin (HUC8). Energy-related produced waters data were acquired and summarized in support of the development of the National Energy Technology Laboratory's NEWTS (National Energy Water Treatment and Speciation Database). Due to the proprietary nature of the wellbore data, this derived product has been spatially compiled by key areas to support research and stakeholder needs.
DOI: 10.25584/pnnldh/1986294
title: Dataset for SIAM MPI23 Project "Model inversion for complex physical systems using low-dimensional surrogates"

description: Training and testing data for the SIAM MPI23 workshop "Model inversion for complex physical systems using low-dimensional surrogates". The data consists of ensembles of input and output pairs corresponding to queries of a 2D saturated groundwater flow model. The inputs consist of random vectors which map to discretized model parameter fields via a Kosambi-Karhunen-Loève expansion. Output corresponds to discretized pressure fields.
DOI: 10.15121/1986418
title: Testing LCM on a Large Scale for Geothermal Drilling Applications Using a Novel Experimental Setup

description: Rheology data obtained from flow loop tests, performed using different lost circulation materials (LCM) to study their effect on fluid rheology and wellbore hydraulics. The sealing performance of different LCM was tested using different fracture sizes. Five academic papers / reports derived from this research are also presented.
DOI: 10.6084/m9.figshare.23537952
title: <strong>telomere dynamics in healthy adults</strong>.zip

description: This data reports the effects of long-term meditation practice on the multiple attributes including peripheral blood mononuclear cell (PBMC) telomere length, expression levels of telomerase regulatory genes (<em>hTR</em> and <em>hTERT</em>) and methylation level at the promoter region of <em>hTERT</em> gene, which are biomarkers of cellular aging. In this case-control study, long-term meditators were found to have significantly longer telomere lengths, up-regulated expression of <em>hTR</em> and <em>hTERT</em> genes, and significantly lower methylation level of the promoter region of <em>hTERT </em>gene compared to age, and sex matched non-meditators.
DOI: 10.6084/m9.figshare.23537952.v1
title: <strong>telomere dynamics in healthy adults</strong>.zip

description: This data reports the effects of long-term meditation practice on the multiple attributes including peripheral blood mononuclear cell (PBMC) telomere length, expression levels of telomerase regulatory genes (<em>hTR</em> and <em>hTERT</em>) and methylation level at the promoter region of <em>hTERT</em> gene, which are biomarkers of cellular aging. In this case-control study, long-term meditators were found to have significantly longer telomere lengths, up-regulated expression of <em>hTR</em> and <em>hTERT</em> genes, and significantly lower methylation level of the promoter region of <em>hTERT </em>gene compared to age, and sex matched non-meditators.
DOI: 10.5281/zenodo.8084165
title: IBHI 1

description: Dataset1
DOI: 10.5281/zenodo.8030023
title: IBHI 1

description: Dataset1
DOI: 10.6084/m9.figshare.23584113
title: Supplementary Material for: Circulating Cell-Free DNA as a Biomarker for Prognosis and Response to Systemic Therapy in Patients with Unresectable Hepatocellular Carcinoma

description: Introduction: Systemic therapy provides clinical benefits to a subset of patients with advanced unresectable hepatocellular carcinoma (HCC). However, few biomarkers are available for predicting prognosis and treatment response in patients with advanced HCC undergoing treatment with systemic therapies. This study aimed to examine whether circulating cell-free DNA (cfDNA) containing circulating tumor DNA can act as a therapeutic response and prognostic biomarker in patients with advanced HCC. Methods: We analyzed longitudinally collected plasma cfDNA of patients with advanced HCC who were naïve to systemic therapy, and assessed their prognostic and predictive values to determine treatment responses. Results: cfDNA concentration positively correlated with entire tumor volume on computed tomography before (P = 0.0231) and at the end (P &lt; 0.0001) of the first-line systemic therapy. The overall survival rate was higher in patients with cfDNA concentrations lower than the median cfDNA level at baseline compared to patients with higher cfDNA concentrations (hazard ratio, 0.2765; 95% confidence interval, 0.08–0.81; P = 0.0197). The ratio of cfDNA at four weeks to that at baseline was predictive of radiographic disease response. In patients with progressive disease, cfDNA concentration at four weeks increased significantly (P = 0.0245), whereas the concentration remained unchanged in patients with other disease courses (P = 0.9375). Conclusion: The baseline plasma cfDNA concentration can be used as a prognostic biomarker in patients with advanced HCC. cfDNA kinetics may also predict the tumor response to therapy and disease progression.