cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p949b5c2
title: Airborne electromagnetic and magnetic survey data, Iliamna Volcano, Alaska, June 2012

description: Airborne electromagnetic (AEM) and magnetic survey data were collected during June 2012 along 556 line-kilometers over Iliamna Volcano, Alaska. These data were collected in support of alteration and volcano flank instability mapping as part of the U.S. Geological Survey (USGS) Volcano Hazards Program. Data were acquired by SkyTEM Survey ApS SkyTEM304 system with the Soloy Helicopters Eurocopter Astar 350 B3 and Bell 407 dual-moment, time-domain helicopter-borne electromagnetic system together with a Geometrics G822A cesium vapor magnetometer with Kroum KMAG4 counter. The survey was flown at a nominal flight height of 30 meters (m) above terrain along block-style lines with a nominal spacing of 250 m. The survey was designed to cover the summit and flanks of Iliamna volcano and includes transit lines east of the volcano which provide additional information on nearby structures and glacial thickness and resistivity. There are data gaps near Iliamna's summit due to poor flight visibility. Data acquisition, minimal processing, and initial inversions were conducted by SkyTEM Survey ApS and described in detail in the contractor's report. The AEM depth of investigation varied with subsurface resistivity and averaged approximately 338 m. This data release includes minimally processed (raw) AEM, SkyTEM Survey ApS initial processed and inverted data, and unprocessed and processed magnetic data. Shapefile versions of the flight lines and flight area are provided. This release also includes unprocessed and processed magnetic data that have been drift corrected and draped to terrain. Digital data from production flights are provided and described in the data dictionary. Final electromagnetic inversions were carried out in Aarhus workbench and magnetic susceptibility modeling was done using a 3D voxel modeling program. Results of the electromagnetic inversion and magnetic model are both included in this data release.
DOI: 10.5281/zenodo.6558594
title: CONTENT -- Multi-context genetic modeling TWAS and eAssociation summary statistics

description: We provide the summary statistics of running CONTENT, the context-by-context approach, and UTMOST on over 22 phenotypes. The phenotypes are listed in the manuscript, and their respective studies and sample size can be found in a table under the supplementary section of the manuscript. All 3 methods were trained on GTEx v7 as well as CLUES, a single-cell RNA sequencing dataset of PBMCs. The data include the gene name, model, cross-validated R^2, prediction pvalue, TWAS p value, TWAS Z score, and a column titled "hFDR" indicating whether the association was statistically significant while employing hierarchical FDR. The benefits of employing such an approach for all methods can be found in the manuscript. We also include the eAssociations that we obtain by training prediction models on GTEx and CLUES alone. For the CxC and UTMOST approaches, these files contain the gene, context, pvalue and adjusted R^2. For CONTENT, these include the gene, context and pvalue and adjusted R^2 for each CONTENT model--the column names are described like a regression of y~x, rsq_y_x, so rsq_observed_full is the adjusted R^2 from regressing the observed expression onto the cross-validated full model predictions. In cases where the R^2 is higher from the specific or shared models, it's best to use either of those rather than the full model for out of sample prediction.
DOI: 10.25493/d4hh-vjj
title: Region-wise Connectivity-based Psychometric Prediction using the Julich-Brain Cytoarchitectonic Atlas (v1.0)

description: Many studies have been investigating the relationships between interindividual variability in brain regions’ connectivity and behavioral phenotypes, by utilizing connectivity-based prediction models. Recently, we demonstrated that a combination of whole-brain and region-wise connectivity-based psychometric prediction (CBPP) approach can provide important insight in the predictive model, and hence in brain-behavior relationships, by offering interpretable patterns. Here, we applied this approach using the Julich-Brain Cytoarchitectonic Atlas with the resting-state functional connectivity and psychometric variables from the Human Connectome Project dataset, illustrating each brain region’s predictive power for a range of psychometric variables. As a result, a psychometric prediction profile was established for each brain region, which can be validated against brain mapping literature.
DOI: 10.3886/e170621
title: KnowledgeRatings

description: Study 1<br>Study 2<br>Study 3<br>Study 4<br>Study 5
DOI: 10.18112/openneuro.ds004064.v1.0.1
title: Queensland Twin IMaging (QTIM)
DOI: 10.5281/zenodo.6558649
title: Grain Size Distribution of slickenlines from Plan de los Platanos and Big Piute Faults

description: Grain Size Distribution (GSD) of Plan de Platanos (<strong>PP</strong>) and Big Piute (<strong>BP</strong>) Fault Slickenlines Grains were manually segmented from images of increasing magnifications obtained through optical and SEM microscopy. The size of the grains was then estimated from the grains' area by calculating the diameter (<strong>d<sub>equ</sub></strong>) of a circle of equivalent area. <strong>Instruments:</strong> ZEISS AX10 Petrographic microscope ZEISS Merlin HR-SEM (BSE) <strong>PP</strong>---&gt; sample <strong>PP_AU01a</strong>_--&gt; Orientation <strong>XZ</strong>----&gt;N=8617-----&gt;andesite <strong>BP</strong>---&gt; sample <strong>BP_07b</strong>--&gt; Orientation <strong>YZ</strong>----&gt;N=11425------&gt;quartzite <strong>Unit of length (1st colum): </strong>micro meters <strong>(µm</strong>) We use Tikoff et al (2019) naming convention for thin section orientation. Tikoff, B., Chatzaras, V., Newman, J., & Roberts, N. M. (2019). Big data in microstructure analysis: Building a universal orientation system for thin sections. <em>Journal of Structural Geology</em>, <em>125</em>, 226–234. https://doi.org/10.1016/j.jsg.2018.09.019
DOI: 10.5281/zenodo.5177183
title: Grain Size Distribution of slickenlines from Plan de los Platanos and Big Piute Faults

description: Grain Size Distribution (GSD) of Plan de Platanos (<strong>PP</strong>) and Big Piute (<strong>BP</strong>) Fault Slickenlines Grains were manually segmented from images of increasing magnifications obtained through optical and SEM microscopy. The size of the grains was then estimated from the grains' area by calculating the diameter (<strong>d<sub>equ</sub></strong>) of a circle of equivalent area. <strong>Instruments:</strong> ZEISS AX10 Petrographic microscope ZEISS Merlin HR-SEM (BSE) <strong>PP</strong>---&gt; sample <strong>PP_AU01a</strong>_--&gt; Orientation <strong>XZ</strong>----&gt;N=8617-----&gt;andesite <strong>BP</strong>---&gt; sample <strong>BP_07b</strong>--&gt; Orientation <strong>YZ</strong>----&gt;N=11425------&gt;quartzite <strong>Unit of length (1st colum): </strong>micro meters <strong>(µm</strong>) We use Tikoff et al (2019) naming convention for thin section orientation. Tikoff, B., Chatzaras, V., Newman, J., & Roberts, N. M. (2019). Big data in microstructure analysis: Building a universal orientation system for thin sections. <em>Journal of Structural Geology</em>, <em>125</em>, 226–234. https://doi.org/10.1016/j.jsg.2018.09.019
DOI: 10.5281/zenodo.6558619
title: CONTENT -- Multi-context genetic modeling TWAS and eAssociation summary statistics

description: We provide the summary statistics of running CONTENT, the context-by-context approach, and UTMOST on over 22 phenotypes. The phenotypes are listed in the manuscript, and their respective studies and sample size can be found in a table under the supplementary section of the manuscript. All 3 methods were trained on GTEx v7 as well as CLUES, a single-cell RNA sequencing dataset of PBMCs. The data include the gene name, model, cross-validated R^2, prediction pvalue, TWAS p value, TWAS Z score, and a column titled "hFDR" indicating whether the association was statistically significant while employing hierarchical FDR. The benefits of employing such an approach for all methods can be found in the manuscript. We also include the eAssociations that we obtain by training prediction models on GTEx and CLUES alone. For the CxC and UTMOST approaches, these files contain the gene, context, pvalue and adjusted R^2. For CONTENT, these include the gene, context and pvalue and adjusted R^2 for each CONTENT model--the column names are described like a regression of y~x, rsq_y_x, so rsq_observed_full is the adjusted R^2 from regressing the observed expression onto the cross-validated full model predictions. In cases where the R^2 is higher from the specific or shared models, it's best to use either of those rather than the full model for out of sample prediction.
DOI: 10.6084/m9.figshare.19769218
title: Raw Data of Viral Load and Gastrointestinal Inflammation Research in COVID-19 Patients.xlsx

description: The raw material data contain much information about general biodata patients, the observational result of vital signs, head/neck, thoracal, abdominal, and extremity. In addition, the data include Peripheral Complete Blood Count, Inflammation markers, CT value to see the viral load, and the fecal calprotectin
DOI: 10.6084/m9.figshare.19769218.v1
title: Raw Data of Viral Load and Gastrointestinal Inflammation Research in COVID-19 Patients.xlsx

description: The raw material data contain much information about general biodata patients, the observational result of vital signs, head/neck, thoracal, abdominal, and extremity. In addition, the data include Peripheral Complete Blood Count, Inflammation markers, CT value to see the viral load, and the fecal calprotectin
DOI: 10.6084/m9.figshare.19783510
title: Does Deviant Peer Affiliation predict Cyberbullying Perpetration? Examining Moral Disengagement as a mediator and Neuroticism as a moderator

description: Deviant peer affiliation plays an important role in adolescents’ cyberbullying perpetration. However, the mediating and moderating mechanisms underlying this association remain largely unknown. Based on Social-ecological conceptual framework of cyberbullying (SECF-C), we tested a moderated mediating model that neuroticism moderated the mediating role of moral disengagement on the relation between deviant peer affiliation and cyberbullying perpetration. A sample of 777 adolescents (aged from 11 to 16 years) participated our survey. Moral disengagement partially mediated the connections between deviant peer affiliation and cyberbullying perpetration. Also, both the direct association between deviant peer affiliation and cyberbullying perpetration and the indirect effect of moral disengagement were moderated by neuroticism, in that these effects were stronger for adolescence with high neuroticism than for those with low neuroticism. These mechanisms have potential implications in preventing adolescents’ cyberbullying perpetration.
DOI: 10.6084/m9.figshare.19783498.v2
title: A comprehensive genomic and transcriptomic dataset of triple-negative breast cancers

description: Molecular subtyping of triple-negative breast cancer (TNBC) is essential for understanding the mechanisms and discovering actionable targets of this highly heterogeneous type of breast cancer. We previously performed a large single-center and multiomics study consisting of genomics, transcriptomics, and clinical information from 465 patients with primary TNBC. To facilitate reusing this unique dataset, we provided a detailed description of the dataset with special attention to data quality in this study. The multiomics data were generally of high quality, but a few sequencing data had quality issues and should be noted in subsequent data reuse. Furthermore, we reconduct data analyses with updated pipelines and the updated version of the human reference genome from hg19 to hg38. The updated profiles were in good concordance with those previously published in terms of gene quantification, variant calling, and copy number alteration. Additionally, we developed a user-friendly web-based database for convenient access and interactive exploration of the dataset. Our work will facilitate reusing the dataset, maximize the values of data and further accelerate cancer research.
DOI: 10.6084/m9.figshare.12850703.v1
title: The effect of body position on maternal cardiovascular function during sleep and wakefulness in late pregnancy

description: An association between the increased risk of late stillbirth and the maternal supine sleeping position has been recently established. The risk of stillbirth following supine sleep has been suspected to occur as a result of aortocaval compression by the gravid uterus. A number of studies conducted during wakefulness have reported compromised cardiovascular function during supine rest, as demonstrated by reductions in cardiac output, blood pressure and utero-placental blood flow. It remains unclear whether similar effects are also present during sleep, due to the presence of key sleep-specific changes in cardiovascular function. To investigate the changes in maternal cardiovascular function between the supine and left-lateral positions during wakefulness and non-rapid eye movement (NREM) sleep in late pregnancy. Twenty-nine women with a singleton pregnancy between 24.7 and 36.7 weeks’ gestation participated in a single overnight sleep study. Physiological measures (blood pressure, heart rate, heart rate variability – HRV, and pulse arrival time – PAT) were measured and recorded throughout the night using standard polysomnography equipment and the Portapres Model-2 device. As the present study evaluated cardiovascular changes during natural rest and sleep in pregnancy, participants were not given explicit instructions on which position to adopt. Body position was continuously recorded using a position monitor and verified with video recording. No changes in systolic, diastolic or mean arterial blood pressure were observed between the left-lateral and supine positions during wakefulness or sleep. However, heart rate was significantly higher in the supine position compared to the left during wakefulness (<i>p=</i> .03), with a similar trend present during sleep (<i>p</i>= .11). A significantly shorter PAT was measured in the supine position (compared to the left) during wakefulness (<i>p=</i> .01) and sleep (<i>p=</i> .01). No change in HRV measures was observed between the left and supine positions in either state. Blood pressure did not appear to differ significantly between the left-lateral and supine positions during wakefulness and sleep. The lack of blood pressure differences may reflect elevated sympathetic activity during rest and sleep in the supine position (compared to the left), suggesting that some degree of compensation for aortocaval compression may still be possible during sleep.
DOI: 10.6084/m9.figshare.12850703
title: The effect of body position on maternal cardiovascular function during sleep and wakefulness in late pregnancy

description: An association between the increased risk of late stillbirth and the maternal supine sleeping position has been recently established. The risk of stillbirth following supine sleep has been suspected to occur as a result of aortocaval compression by the gravid uterus. A number of studies conducted during wakefulness have reported compromised cardiovascular function during supine rest, as demonstrated by reductions in cardiac output, blood pressure and utero-placental blood flow. It remains unclear whether similar effects are also present during sleep, due to the presence of key sleep-specific changes in cardiovascular function. To investigate the changes in maternal cardiovascular function between the supine and left-lateral positions during wakefulness and non-rapid eye movement (NREM) sleep in late pregnancy. Twenty-nine women with a singleton pregnancy between 24.7 and 36.7 weeks’ gestation participated in a single overnight sleep study. Physiological measures (blood pressure, heart rate, heart rate variability – HRV, and pulse arrival time – PAT) were measured and recorded throughout the night using standard polysomnography equipment and the Portapres Model-2 device. As the present study evaluated cardiovascular changes during natural rest and sleep in pregnancy, participants were not given explicit instructions on which position to adopt. Body position was continuously recorded using a position monitor and verified with video recording. No changes in systolic, diastolic or mean arterial blood pressure were observed between the left-lateral and supine positions during wakefulness or sleep. However, heart rate was significantly higher in the supine position compared to the left during wakefulness (<i>p=</i> .03), with a similar trend present during sleep (<i>p</i>= .11). A significantly shorter PAT was measured in the supine position (compared to the left) during wakefulness (<i>p=</i> .01) and sleep (<i>p=</i> .01). No change in HRV measures was observed between the left and supine positions in either state. Blood pressure did not appear to differ significantly between the left-lateral and supine positions during wakefulness and sleep. The lack of blood pressure differences may reflect elevated sympathetic activity during rest and sleep in the supine position (compared to the left), suggesting that some degree of compensation for aortocaval compression may still be possible during sleep.
DOI: 10.5281/zenodo.6558593
title: scAllele variant calls and linkage events

description: Variant calls (*.vcf.gz) and linkage events (*.mi_summary.tab) from - GM12878 cells - iPSC cells (individuals NA19098, NA19101, NA19239) - Lung cancer cells (individuals TH238 and TH179)
DOI: 10.5281/zenodo.6558592
title: scAllele variant calls and linkage events

description: Variant calls (*.vcf.gz) and linkage events (*.mi_summary.tab) from - GM12878 cells - iPSC cells (individuals NA19098, NA19101, NA19239) - Lung cancer cells (individuals TH238 and TH179)
DOI: 10.25911/sswy-3t61
title: Bird survey data from the Victorian Central Highlands 2004 to 2019. Associated with paper 'Rapid bird species recovery following high-severity wildfire but in the absence of early successional specialists' for Diversity and Distributions

description: We established 85 one-hectare permanent bird-monitoring sites. These sites were at least 750 m apart, although there was often 5-10 km between sites. We assembled data gathered from surveys completed between 2004 and 2019. We determined the severity of the 2009 fire at each site by on-ground vegetation surveys completed within four weeks of the fire. We assigned each site to one of three categories: (1) no fire in 2009, (2) moderate severity fire in 2009 where the ground and understorey layers had the majority of their above-ground biomass scorched or consumed but the overstorey remained green, and (3) high fire severity in 2009 in which plants in the ground, shrub, understorey and eucalypt tree layers had the majority of their above-ground biomass scorched or consumed. Sixteen of our sites burned at high severity, 28 at moderate severity, and 41 did not experience fire in 2009. Notably, vegetation monitoring over the post-fire period (2009-2019) indicates there has been rapid vegetation growth in burnt areas, with the canopy height of regenerating eucalypts often approaching 15 metres (Bowd et al., 2021a). We completed bird surveys in late November and early December in 2004, 2005, 2007, 2009, 2010, 2011, 2012, 2013, 2014, 2016, 2017, and 2019.
DOI: 10.25959/xxgs-wp18
title: Revision of Data for Provenance of the Palaeozoic sedimentary rocks in TasmaProvenance of the Paleozoic sedimentary rocks in Tasmania and Waratah Bay, south Victoria: Constraints from hafnium isotope and zircon trace element geochemistry

description: This database contains all the data used in Chapter 5 of Umer Habib's PhD thesis. The data file contains the acquired Hafnium isotope data, previously published hafnium data and zircon geochemistry. The data can also be requested by emailing Umer Habib at umerhabib990@gmail.com.
DOI: 10.25959/e7zx-cg03
title: Copy of Data for geochronology, geochemistry, and zircon Hf-isotopic systematics of the middle Cambrian igneous suites and metasedimentary rocks in western Tasmania and central Victoria

description: This database contains all the data used in Chapter 2 of Umer Habib's PhD thesis. The location of samples, U-Pb ages, U-Pb acquisition methodology, zircon geochemistry and Hafnium isotope data is contained in separate tabs of the excel file. The supplementary CL images and sample geochemistry is contained in the PDF file. The data can also be requested by contacting Umer Habib at umerhabib990@gmail.com.
DOI: 10.5281/zenodo.6558676
title: Pacific Hotspot Trails Datasets

description: Data tables used for analysis of eleven Pacific hotspot chains which includes the following:. - Inferred hotspot paths with continuous age and paleolatitude values along trail with uncertainties - Tables with inter-hotspot separations for all 55 chain pairs - The raw radiometric age and paleolatitude data the trails are derived from - Partially processed age data used for determining our age-progression models These data provide useful constraints for the modeling of absolute plate and plume motion in the Pacific region.
description: Funding: US National Science Foundation, Grant OCE-1953499
DOI: 10.5281/zenodo.5576465
title: Pacific Hotspot Trails Datasets

description: Data tables used for analysis of eleven Pacific hotspot chains which includes the following:. - Inferred hotspot paths with continuous age and paleolatitude values along trail with uncertainties - Tables with inter-hotspot separations for all 55 chain pairs - The raw radiometric age and paleolatitude data the trails are derived from - Partially processed age data used for determining our age-progression models These data provide useful constraints for the modeling of absolute plate and plume motion in the Pacific region.
description: Funding: US National Science Foundation, Grant OCE-1953499
DOI: 10.14457/cu.the.2010.2233
title: สภาพการทำงาน ทัศนคติ และบทบาทของล่ามในศาล

description: การสื่อสารระหว่างกลุ่มบุคคลที่ไม่ได้ใช้ภาษาเดียวกันต้องใช้ล่ามเป็นตัวกลางในการ สร้างความเข้าใจและทำให้การสื่อสารนั้นเกิดผล ปัจจุบันล่ามมีหลายประเภทและหลากบริบท เช่น ล่ามการประชุม ล่ามติดตาม ล่ามโรงพยาบาล เป็นต้น และหนึ่งในบริบทนั้นคือล่ามในศาล สารนิพนธ์ฉบับนี้จัดทำขึ้นเพื่อศึกษาสภาพการทำางานและทัศนคติของล่ามในศาล บทบาทและ ความสำคัญของล่าม ความคุ้มครองทางกฎหมายที่ล่ามในศาลได้รับ ตลอดจนปัญหาที่เกิดขึ้น ในการปฏิบัติหน้าที่ล่ามในศาลและแนวทางแก้ไข การวิจัยครั้งนี้ผู้วิจัยได้ศึกษาค้นคว้าข้อมูลจากหนังสือภาษาไทยและภาษาต่างประเทศ และเอกสารการประชุม และเอกสารจากศาลต่างๆในประเทศสหรัฐอเมริกา ประกอบกับข้อมูลหลักที่ได้จากการสัมภาษณ์ล่ามในศาลจำนวน 4 คน และการสัมภาษณ์ผู้ใช้ล่ามอีก 3 คน ผลการสัมภาษณ์พบว่าล่ามในศาลมีสภาพการทำางานที่มีความเสี่ยงเพราะไม่ได้รับความคุ้มครอง ทางกฎหมาย บางครั้งบทบาทของล่ามมากกว่าตัวกลางในการสื่อสาร เพราะล่ามยังเป็นที่พึ่ง ทางใจต่อจำเลยอีกด้วย แต่ล่ามเห็นตรงกันว่าต้องทำหน้าที่ด้วยความเป็นกลาง เพราะล่ามไม่มี ผลประโยชน์ในคดี ปัญหาที่พบคือการขาดมาตรฐานวัดความสามารถของผู้ที่จะมาเป็นล่ามใน ศาล ค่าตอบแทนที่ได้รับน้อยเมื่อเทียบกับค่าตอบแทนการล่ามประเภทอื่นๆ และผู้ใช้ล่ามที่ ทำางานร่วมกันลำบากเพราะขาดความเข้าใจเกี่ยวกับล่าม ควรแก้ไขโดยการจัดระบบที่ได้ มาตรฐานในการคัดเลือกล่าม และเพิ่มค่าตอบแทนเพื่อเป็นแรงจูงใจในการทำงาน