cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7998296.v1
title: Supplementary Material for: Histopathologic Features that Predict Transplant Glomerulopathy Progression in a Chinese Cohort

description: <b><i>Background:</i></b> Transplant glomerulopathy (TG) represents a major cause of long-term allograft failure and is the leading cause of overall post-transplant proteinuria. The extent to which histopathologic features predicts prognostication is uncertain. <b><i>Methods:</i></b> A single-center retrospective cohort with biopsy-proven TG was investigated. Renal biopsies were scored according to Banff 2017. The primary outcome was death-censored graft failure defined as return to dialysis or estimated glomerular filtration rate (eGFR) decreased to &lt;15 mL/min/1.73 m<sup>2</sup>. The prognostic significance of clinical and histopathologic parameters was determined using Cox proportional hazards models. <b><i>Results:</i></b> Data from 180 cases were available for analysis with a median follow-up of 5.0 (2.6–8.2) years. In multivariable models, ci + ct score (HR 3.1; 95% CI 2.0–4.9), cg score (HR 1.7; 95% CI 1.1–2.8), eGFR (HR 2.1; 95% CI 1.4–3.2) and proteinuria (HR 2.4; 95% CI 1.6–3.7) were independent predictors of the primary outcome. Mesangial Immunoglobulin A deposition did not significantly affect allograft survival. The only significant pathologic factors for the severity of proteinuria were cg and g + ptc (adjusted <i>R</i><sup>2</sup> = 0.46) as determined by multivariable stepwise linear regression analysis. <b><i>Conclusions:</i></b> Severe ci + ct and cg at biopsy were predictors of unfavorable allograft prognosis in TG patients even after taking into consideration clinical characteristics. Histologic severity of cg and g + ptc was significantly associated with clinical proteinuria.
DOI: 10.17632/894vmng8cj
title: Temperature

description: This data includes real temperature recorded during one day with the time resolution of one minute.
DOI: 10.6084/m9.figshare.14731710.v1
title: Microbial temperature-dependent metabolic rates data

description: Simultaneous growth and respiration measurements across a range of temperatures for 29 strains of aerobic bacteria.<br>
DOI: 10.6084/m9.figshare.24288316.v4
title: ImageB4 Humanitarian Dataset

description: The ImageB4 Humanitarian Dataset is derived from the Medic dataset and specifically focuses on images related to humanitarian efforts in response to disasters. Images in this dataset are selected based on the "affected_injured_or_dead_people" parameter within the "humanitarian" column.
DOI: 10.6084/m9.figshare.10269704.v1
title: Dataset for "Vitamin D binding protein is required to utilize skin-generated vitamin D" Duchow et al.

description: Dataset provided is data presented in the publication "Vitamin D binding protein is required to utilize skin-generated vitamin D" Duchow et al.
DOI: 10.6084/m9.figshare.28887701.v1
title: Leadership for developing CoPs

description: This study aims to exploratorily examine leadership styles that develop team communities of practice (CoPs).
DOI: 10.6084/m9.figshare.13710145.v1
title: Leaf chlorophyll content

description: Weekly mean leaf chlorophyll content.Spatial resolution: 2X (1/2 degree)Temporal resolution: 7D (7 days)<br>
DOI: 10.6084/m9.figshare.9209831.v1
title: Taxon-rich multigene phylogenetic analyses resolve the phylogenetic relationship among deep-branching Stramenopiles

description: Assembled transcripts of Incisomonas marina, Platysulcus tardus, and Pseudophyllomitus vesiculosus.
DOI: 10.6084/m9.figshare.12932800.v1
title: Feed and nutrient digestibility.xlsx

description: nutrient digestibility<br>
DOI: 10.6084/m9.figshare.23911425.v1
title: Subventricular Zone atlas of the human brain

description: Atlas of the subventricular zone in MNI space:Symmetric version: SVZ_mask_sym.nii.gz + SVZ_mask_sym.csv represented in the 'ICBM 2009b Nonlinear Symmetric' template with 0.5×0.5×0.5mm resolutionAsymmetric version: SVZ_mask_asym.nii.gz + SVZ_mask_asym.csv represented in the 'ICBM 2009b Nonlinear Asymmetric' template with 0.5×0.5×0.5mm resolutionThe atlas is divided into:Separate left and right sidesBoth sides have 4 subregions: Frontal Horn, Body, Occipital Horn and Temporal HornFor more details:Danique E Bruil, Szabolcs David, Steven H J Nagtegaal, Sophia F A M de Sonnaville, Joost J C Verhoeff, Irradiation of the subventricular zone and subgranular zone in high- and low-grade glioma patients: an atlas-based analysis on overall survival, Neuro-Oncology Advances, Volume 4, Issue 1, January-December 2022, vdab193, https://doi.org/10.1093/noajnl/vdab193Please cite this work when using the atlas.
DOI: 10.6084/m9.figshare.24952557
title: The Global Evolution of Inflammatory Bowel Disease across Four Epidemiologic Stages

description: Table of extracted data from systematic review on the incidence and prevalence of ulcerative colitis and Crohn's disease using population-based studies.
DOI: 10.6084/m9.figshare.28651112.v1
title: FID in Blackbirds Turdus merula

description: Here, we present the results of the long-term longitudinal study on FID in an urban population of the European Blackbird <i>Turdus merula</i>. The FID was strongly repeatable within individuals, suggesting that individual identity (or personality) is among the most important factors explaining escape behaviour in urban Blackbirds. Adult birds had higher FID than fledglings and adult FID increased with age, reflecting a combination of within- and between-individual effects. Adult males were bolder (had lower FID) than females. Adult FID also increased over the course of the season, with lowest FID during parental feeding and highest FID in the post-reproductive period.
DOI: 10.6084/m9.figshare.9252992.v1
title: Concatenated_alignment_SAR_only

description: Final concatenated dataset contains only Stramenopiles, Alveolates, and Rhizaria
DOI: 10.6084/m9.figshare.14558496.v1
title: Mapping File O. Strigosa Characterization

description: This mapping file accompanies the manuscript, Characterization of the Gut Microbiome in Wild Rocky Mountainsnails (<i>Oreohelix strigosa</i>), Chalifour & Li 2021. <b></b>
DOI: 10.6084/m9.figshare.23949270.v1
title: Assessing Larval Fish Diversity and Conservation Needs in the Luzon Strait using DNA Barcoding

description: Accurate species identification and biodiversity assessment of larval fish are essential for effective management and conservation of fisheries resources, as it allows for the estimation of parent stocks, assessment of future recruitment, and prediction of spawning and nursing grounds. However, traditional morphology-based identification methods have inherent limitations, highlighting the need for accurate and efficient techniques to address these challenges effectively. The Luzon Strait, a crucial channel connecting the South China Sea to Western Pacific Ocean, is renowned for its fish biodiversity. However, our knowledge of the biodiversity status of larval fish species in this region remains insufficient. Here we employed DNA barcoding to assess larval fish species diversity in the Luzon Strait and adjacent waters. A total of 385 larval fish individuals were collected from 15 stations, and 354 individuals were successfully barcoded and identified, representing 147 species from 93 genera, 44 families, and 22 orders. The interspecific K2P divergence exhibited a significant increase of approximately 55-fold higher than intraspecific divergence. The phylogenetic neighbor-joining tree confirmed the distinct lineages for each taxonomic level, demonstrating the feasibility of DNA barcoding. We observed notable variations in fish species diversity and community composition among sampling stations. Non-metric multidimensional scaling analysis revealed greater diversity and dissimilarity of larval fish community compositions in the western regions compared to the eastern regions. This pattern corresponded to the grouping based on the path of the Kuroshio current, suggesting its influence on the fish community structure. Additionally, economically valuable species were identified at these stations, highlighting their ecological significance as potential spawning or nursery grounds for larval fish. We also examined the habitat type, human use, and conservation status of each larval fish species, providing comprehensive insights into their ecological significance and conservation needs. This study offers valuable information for identifying important spawning and nursing grounds of fish populations, thereby supporting sustainable management and conservation of fisheries resources in this region.
DOI: 10.6084/m9.figshare.24151476.v1
title: Supplementary Material for: Early-life factors and multimorbidity risk later in older age: Evidence based on CHARLS

description: Introduction: Early-life factors were reported to exert influence on the health condition of individuals in the long-term. However, limited research explored the connection between early-life factors and multimorbidity in later years. Methods: We utilized the data from the China Health and Retirement Longitudinal Study to assess this possible association in the present cross-sectional study. Multimorbidity was determined based on 14 common chronic diseases included in the study. Logistic regression was employed to examine the link between early-life factors and subsequent multimorbidity. Results: Out of 7,578 participants who met the inclusion criteria for analysis, 3,765 (49.68%) were females. The mean age was 68.25 ± 6.70 years. Participants who rated their health during childhood as average [odds ratio (OR) 0.78, 95% confidence interval (CI) 0.63-0.96] or better [OR 0.72, 95% CI 0.57-0.91] were significantly less likely to experience multimorbidity in older life. By contrast, experiencing violence from two of family members was significantly associated with future multimorbidity [OR (95% CI), 1.29 (1.04-1.60)]. A superior family financial situation was also negatively associated with multimorbidity, with average [OR (95% CI), 0.72 (0.63-0.83)] and better off than average [OR (95% CI), 0.76 (0.62-0.93)]. Discussion: Individuals with poor health status, inferior family socioeconomic status or experienced violence from family members in childhood were more likely to suffer from multimorbidity in later life. Enhanced social monitoring of potentially adverse conditions in youngsters and targeted interventions could help mitigate the progression of multimorbidity in later life.
DOI: 10.6084/m9.figshare.5701384.v1
title: Additional file 4: of Spatial pattern in stress drops of moderate-sized earthquakes on the Pacific Plate off the south-east of Hokkaido, Japan: implications for the heterogeneity of frictional properties

description: results_P. (TXT 54 kb)
DOI: 10.6084/m9.figshare.24782691.v1
title: Supplementary Material for: A low-cost, high-fidelity simulator for transabdominal chorionic villus sampling

description: Introduction: Chorionic villus sampling (CVS) remains essential for first trimester genetic diagnosis, yet clinical volume may be insufficient to train new clinicians in the technique. Available simulation models are expensive, require animal parts or specialized resins, and cannot be stored for repeated use.

Methods: We present a model for trans-abdominal CVS (TA-CVS) which is constructed from readily-available materials costing less than $10 and can be refrigerated and re-used to train maternal fetal medicine (MFM) fellows in CVS.

Results: All three attending physicians performing TA-CVS at our institution described the model as an accurate visual and tactile simulation, prompting its integration into our fellowship curriculum. To date, two senior fellows have achieved competency on the simulator and begun to perform clinical CVS under supervision, one of whom is an author on this paper. Both fellows and attendings indicated that the simulator provided a valuable tool for repeated practice prior to clinical CVS. Simulators are now maintained on the unit and have been re-used for three months and dozens of simulated procedures each without any apparent qualitative degradation in performance.

Discussion/Conclusion: We describe a low-cost easily constructed, durable, high-fidelity simulator for TA-CVS.
DOI: 10.6084/m9.figshare.24952557.v1
title: The Global Evolution of Inflammatory Bowel Disease across Four Epidemiologic Stages

description: Table of extracted data from systematic review on the incidence and prevalence of ulcerative colitis and Crohn's disease using population-based studies.
DOI: 10.6084/m9.figshare.24968331.v3
title: Real-time detection of twenty amino acids and discrimination of pathologically relevant peptides with functionalized nanopore

description: Source supplementary data of research article "Real-time detection of 20 amino acids and discrimination of pathologically relevant peptides with functionalized nanopore" (https://doi.org/10.1038/s41592-024-02208-7).
DOI: 10.6084/m9.figshare.28639604
title: Chromosome-level genome assembly of the small yellow croaker, Larimichthys polyactis (Perciformes: Sciaenidae)

description: The genomic annotation-related data for Larimichthys polyactis.
DOI: 10.6084/m9.figshare.28639604.v1
title: Chromosome-level genome assembly of the small yellow croaker, Larimichthys polyactis (Perciformes: Sciaenidae)

description: The genomic annotation-related data for Larimichthys polyactis.
DOI: 10.17632/f35nry7hjz
title: A Test to Compare Interval Time Series - Supplementary Material

description: Supplementary material for the manuscript "A Test to Compare Interval Time Series". This includes figures and tables referred to in the manuscript as well as details of scripts and data files used for the simulation studies and the application. All scripts are in MATLAB (.m) format and data files are is MATLAB (.mat) and in EXCEL (. xlsx) formats.
DOI: 10.17632/mxxkhmgm3n
title: 2025_0108_Chloride

description: The chemical species mass concentration in NR-PM1 across China and Cl- time series of six tipical observations
DOI: 10.17632/zbsm7ypwr6
title: Manuscript_CHIECO-D-24-01037_code

description: data and code for Manuscript_CHIECO-D-24-01037.The document mainly consists of:macroeconomic_data.dta, microeconomic_data.dta, paper_code.do. The data software used is stata.
DOI: 10.17632/zbsm7ypwr6.1
title: Manuscript_CHIECO-D-24-01037_code

description: data and code for Manuscript_CHIECO-D-24-01037.The document mainly consists of:macroeconomic_data.dta, microeconomic_data.dta, paper_code.do. The data software used is stata.
DOI: 10.6084/m9.figshare.20199107.v1
title: Telomere-to-telomere assemblies and annotation data for Gossypium raimondii

description: Telomere-to-telomere assemblies and annotation data for Gossypium raimondii
DOI: 10.6084/m9.figshare.25927192.v1
title: H9_W

description: Power related data for House 9
DOI: 10.4121/uuid:8a8a91bc-e520-4d19-a127-5fd2232cc58e
title: LIDAR elevation data of the Dutch coast

description: Elevation measurements of the dutch coast done with LIDAR
DOI: 10.6084/m9.figshare.13042031.v1
title: Data set to study niche evolution in White-eyes

description: Data for performing studying niche evolution in Zosterops <br>Engler et al. (revision). Niche evolution reveals disparate signatures of speciation in the 'great speciator' (white-eyes, Aves: Zosterops)<br>I will lift the embargo upon acceptance.<br>code can be accessed via: https://github.com/JOEngler/ZostiNicheEvol<br>The data is stored in multiple folders with additional folders to be filled with results from the analyses. <br>CLIMATE: Contains five variables of masked climate data from WorldClim 2 in 2.5 min resolution. ENMs: an empty folder to be filled with ENM predictions for each speciesMOREDATA: various data files including the phylogenetic treeNICHETESTS: empty folder to be filled with graphical output and matrices from pairwise niche comparisonsOCC: Contains lineage specific csv of filtered presence recordsPNO: empty folder to be filled with output from ancestral niche reconstructions using phyloclim package<br>
DOI: 10.6084/m9.figshare.28645487.v2
title: <b>Cardiac PAD2 Expression and Myocardial Citrullination Decline with Age in Female Mice Independent of Estrogen</b>

description: Supplemental data
DOI: 10.6084/m9.figshare.7285346.v1
title: Dataset Time to persistent and newly stunted.xlsx

description: Longitudinal Cohort study on time to persistent and newly stunting among children with HIV who use HAART
DOI: 10.6084/m9.figshare.24025599.v1
title: Supplementary Material for: The initial journey of patients with metastatic pancreatic cancer (PaCTO project): a nationwide survey among Portuguese specialist physicians

description: Introduction: We aimed to characterize the initial healthcare journey of metastatic pancreatic ductal adenocarcinoma (mPDAC) patients in Portugal, including healthcare provision and factors affecting therapeutic decisions, namely BRCA mutations testing. Methods: This is a descriptive cross-sectional, web-based survey using a convenience sampling approach. Portuguese oncologists and pathologists that routinely work with mPDAC patients from the different geographical regions and settings were invited to participate in the study via email (December 2020). Descriptive statistical analyses were performed, with categorical variables reported as absolute and relative frequencies, and continuous variables with non-normal distribution as median and interquartile range (IQR) (Stata v.15.0). Results: Seventy physicians participated in the study (43 oncologists, 27 pathologists). According to the responses, a median of 28 patients per center (IQR 12-70) was diagnosed with PDAC in the previous year; 22 of them referring (IQR 8-70) to mPDAC. The pointed median time from patients’ first hospital admission until disease diagnosis/staging is between 2-4 weeks. Endoscopic ultrasound with fine needle biopsy (EUS-FNB) is available in most hospitals (86%). Around 50% of physicians request BRCA testing; the assessment of additional biomarkers besides BRCA is requested by 40% of professionals. Half of them stated that BRCA testing should be requested earlier - upon histological diagnosis, especially because the median time for results is of 4.0 weeks (IQR 4-8). PARP inhibitors such as olaparib, when available, would be the therapy of choice for most oncologists (71%) if no disease’ progression occurs after four months. Treatments’ selection is usually grounded on clinical criteria (e.g. performance status, liver function). Around 45% of patients use FOLFIRINOX/mFOLFIRINOX as first-line therapy. Gemcitabine+nab-paclitaxel is used by 35% of patients as second-line therapy. Discussion/Conclusions: Physicians in Portugal support the increasing role of patient-tailored treatments in mPDAC, whose selection should be grounded on tumoral subtyping and molecular profiling. Further efforts to develop multidisciplinary teams, standardized clinical practice and optimize the implementation of new target therapies are needed.
DOI: 10.6084/m9.figshare.9902168.v1
title: Supplementary Material for: The Interstitial Lung Disease-Gender-Age-Physiology Index Can Predict the Prognosis in Surgically Resected Patients with Interstitial Lung Disease and Concomitant Lung Cancer

description: <b><i>Background:</i></b> The interstitial lung disease-gender-age-physiology (ILD-GAP) index and staging system have been reported as a clinical prognostic factor for ILD, including all ILD subtypes. <b><i>Objectives:</i></b> The purpose of this study was to clarify the association of various prognostic indices, including the ILD-GAP index, with the prognosis, the incidence of acute exacerbations of ILD (ILD-AE), and the use of long-term oxygen therapy (LTOT) after surgery in surgically resected patients with ILD and concomitant lung cancer, to provide additional information when considering whether it is safe to perform surgery. <b><i>Methods:</i></b> The medical records of patients with ILD and concomitant lung cancer who had undergone surgery at Shinshu University Hospital between August 2001 and September 2016 were retrospectively analyzed. <b><i>Results:</i></b> There were significant differences in survival between the ILD-GAP index: 0–1 and ≥4 groups (<i>p</i> = 0.0001) and between the ILD-GAP index: 2–3 and ≥4 groups (<i>p</i> = 0.0236). A higher ILD-GAP index was independently associated with the risk of death (hazard ratio [HR] 1.32030; <i>p</i> = 0.0059). A higher body mass index (BMI) and a higher serum C-reactive protein (CRP) level were independently associated with the incidence of ILD-AE (HR 1.28336; <i>p</i> = 0.0206 and HR 26.3943; <i>p</i> = 0.0165, respectively). A higher severity of ILD on chest high-resolution computed tomography (HRCT) was independently associated with the use of LTOT (HR 2.78670; <i>p</i> = 0.0313). <b><i>Conclusions:</i></b> The ILD-GAP index can predict the prognosis in surgically resected patients with ILD and concomitant lung cancer. The BMI and serum CRP levels were independent determinants that predicted the incidence of ILD-AE. The severity of ILD on chest HRCT was an independent determinant that predicted the use of LTOT.
DOI: 10.5522/04/17135936.v1
title: Underlying data from "Lamin A precursor localises to the Z-disk of sarcomeres in the heart and is dynamically regulated in muscle cell differentiation"

description: The excel file contains raw data set of values generated from Semi-quantitative analysis of protein abundance using the Li-Cor Odyssey platform. Time intervals of cycling (pre-differentiation) 24, 72 and 168 hours post differentiation of C2C12 myoblasts.<br> <br> The PDF contains uncropped western blots used in the manuscript annotated for clarity <br> The TIFF file is Supporting Figure 1 from the manuscript<br>
DOI: 10.6084/m9.figshare.20479068.v1
title: FICB I

description: ficb 手术
DOI: 10.6084/m9.figshare.7435556.v1
title: Supplementary Material for: Progression of Hearing Loss in the Aging Population: Repeated Auditory Measurements in the Rotterdam Study

description: We quantified changes in the auditory acuity of 675 aging adults (mean age 71.1 years, 52.0% female, mean follow-up 4.4 years ± 0.2) of an ongoing cohort study with a pure-tone audiogram and a speech-in-noise test. Generalized estimating equation models were used to study the association between hearing loss and the progression with age, sex, education, cognition, BMI, blood pressure, having type 2 diabetes mellitus, cholesterol ratio, smoking and alcohol consumption. The mean progression of hearing loss was 0.29 and 1.35 dB/year (low and high frequencies). Progression of hearing loss was associated with baseline hearing thresholds. Besides, the presence of type 2 diabetes, smoking, age, sex and time were associated with worse hearing at baseline, but there was no statistical evidence that the tested determinants were associated with progression of hearing loss. This finding indicates that the 4-year progression of hearing loss in older adults in this study is not influenced by the measured determinants. More research with multiple follow-up rounds is desired.
DOI: 10.17632/zrzvd9hwc3
title: Learning from errors

description: Material sheets
DOI: 10.6084/m9.figshare.28755017.v2
title: U-Net GIS Data

description: The GIS database used in this project serves as a centralized repository for all spatial datasets required for wildfire threat analysis and model training. It includes CAL FIRE’s Wildland Fire Threat layer, which provides pixel-based classifications of wildfire potential across California, as well as transportation infrastructure layers, including primary and secondary roads and railways.<br>To support impact analysis, 1,000-foot buffer zones were generated around each infrastructure feature to define zones of interest for wildfire segmentation. The database is structured for integration into both machine learning workflows and GIS environments, enabling seamless overlay, visualization, and spatial querying within platforms such as ArcGIS Pro or QGIS.