cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7226299
title: Extracted MSR GitHub Repository URLs

description: This dataset contains text files of GitHub URLs pointing to hosted git repositories. These URLs come from mining software repository (MSR) datasets. URLs are built by taking the repository owner's name (OWNER) and it's name (REPO) and appending them to https://github.com/. There is one URL per line. <em>URLs have not been tested for their current availibility</em>. An example URL format is provided below: <pre><code>https://github.com/OWNER/REPO</code></pre> Current URLs are from the following datasets: libraies.io January 12th, 2020 dataset Jeremy Katz, "Libraries.io Open Source Repository and Dependency Metadata". Zenodo, Jan. 12, 2020. doi: 10.5281/zenodo.3626071. RepoReapers/reaper dataset Munaiah, N., Kroh, S., Cabrey, C. et al. Curating GitHub for engineered software projects. Empir Software Eng 22, 3219–3253 (2017). https://doi.org/10.1007/s10664-017-9512-6 GH Torrent partial dataset G. Gousios, “The GHTorent dataset and tool suite,” in <em>Proceedings of the 10th Working Conference on Mining Software Repositories</em>, San Francisco, CA, USA, May 2013, pp. 233–236.
description: {"references": ["Jeremy Katz, \"Libraries.io Open Source Repository and Dependency Metadata\". Zenodo, Jan. 12, 2020. doi: 10.5281/zenodo.3626071.", "Munaiah, N., Kroh, S., Cabrey, C. et al. Curating GitHub for engineered software projects. Empir Software Eng 22, 3219\u20133253 (2017). https://doi.org/10.1007/s10664-017-9512-6"]}
DOI: 10.6069/h54k-5z70
title: Targeted validation of interaction between ErbB4 JM-a isoform and  β1 integrin

description: The ErbB4 receptor isoforms JM-a and JM-b differ within their extracellular juxtamembrane (eJM) domains. Here we used ErbB4 isoforms as a model to address whether structural variation in the eJM domain of receptor tyrosine kinases (RTK) affects downstream signaling. Analysis of ErbB4 interactome and super-resolution cell imaging indicated association of the JM-a- and JM-b-like receptors with specific signaling complexes at different cell surface compartments. A JM-a-specific sequence motif was discovered, and its presence in the eJM domains of several other human RTKs predicted selective STAT activation indicating a conserved RTK signaling mechanism. The RTKs with the JM-a-like eJM motif activated STAT5a, and those that were JM-b-like (lacking the JM-a-like motif) activated STAT5b and STAT3. TYK2 was found to be necessary for JM-b-stimulated STAT5b activation. The activation of STAT5a by the JM-a-like receptors, in turn, involved specific interaction with oligosaccharides N-linked to cell surface glycoproteins such as β1 integrin. These findings provide evidence for a mechanism linking a ubiquitous extracellular motif in RTKs with selective intracellular STAT signaling.
DOI: 10.5281/zenodo.7235961
title: Escherichia coli codon usage analysis

description: Codon counts for MG1655 Codon usage bias table Gene lists with biased codon usage, for each codon Materials and methods
DOI: 10.5281/zenodo.7235960
title: Escherichia coli codon usage analysis

description: Codon counts for MG1655 Codon usage bias table Gene lists with biased codon usage, for each codon Materials and methods
DOI: 10.34740/kaggle/dsv/4366028
title: Mahanagar Yatayat Dataset
DOI: 10.15784/601616
title: Walcott Glacier Exposure Data

description: This dataset includes beryllium-10 surface exposure data collected in conjunction with a glacial history project in the Walcott Bay region of southern McMurdo Sound. The data are presented in the conventional CRONUS input format.
DOI: 10.5281/zenodo.7229683
title: Data and scripts related to Cottaar, Martin, Li, Parai (2022) publication in Seismica

description: <strong>Codes and data for<br> Cottaar, Martin, Li, Parai, 2022, The root to the Galápagos mantle plume on the core-mantle boundary, Seismica</strong> The four tar files with data (20161225.tar, 20190929.tar, 20150519.tar, 20170224.tar) need to be unpacked and moved into the ‘Data’ directory. Separate tar files were created to aid the upload process. <br> Warning: These are not well-commented codes, but should run after dependencies are installed. Unfortunately, I do not currently have time to clean and comment them. Do feel free to get in touch at sc845@cam.ac.uk about anything. Figures from the paper: Figure 1- plot_map_paper.py Figures 2-5 - plot_everything_single_event.py Figure 6 - plot_beamresults.py Figure 7 - Cross-sections are obtained from http://www.earth.ox.ac.uk/~smachine/ Figure 8 - Geochem_plot/plot_ulvzs.py Uses results from various publications as indicated in the paper. <br> Dependencies (besides ‘standard’ python libraries) ObsPy - www.obspy.org - library for seismic data processing Basemap - https://matplotlib.org/basemap/ - now deprecated library for map plotting in matplotlib Observed data and synthetics are stored PICKLE format. Metadata are stored within. Using the data and accessing metadata is demonstrated in the various script. The process to download and process the data from the IRIS database, is included in the folder ‘Download_processing_codes’. Note that after this process quality control of the traces is applied by eye. This is why the final data set is included in the repository. Synthetics are made with the ‘sandwiched’ coupled-spectral element method (‘sandwiched’-CSEM). For access, please contact the authors of Capdeville, Y., To, A. and Romanowicz, B. (2003) ‘Coupling spectral elements and modes in a spherical Earth: an extension to the “sandwich” case’, Geophysical Journal International, 154(1), pp. 44–57. doi: 10.1046/j.1365-246X.2003.01959.x. <br> Data is provided for the four events presented in the main paper. Synthetic data are stored in the subdirectory CSEM for each event. Input of the ULVZ model for each synthetic case are stored in the folder ‘Synthetic_ULVZ_input_files’. Model directories are named ULVZ160 to ULVZ180 and input files are anomalies.ULVZ160 to anomalies.ULVZ180. Vik colormap is from https://www.fabiocrameri.ch/colourmaps/
description: {"references": ["Cottaar, Martin, Li, Parai, 2022, The root to the Gal\u00e1pagos mantle plume on the core-mantle boundary, Seismica"]}
DOI: 10.5281/zenodo.7229682
title: Data and scripts related to Cottaar, Martin, Li, Parai (2022) publication in Seismica

description: <strong>Codes and data for<br> Cottaar, Martin, Li, Parai, 2022, The root to the Galápagos mantle plume on the core-mantle boundary, Seismica</strong> The four tar files with data (20161225.tar, 20190929.tar, 20150519.tar, 20170224.tar) need to be unpacked and moved into the ‘Data’ directory. Separate tar files were created to aid the upload process. <br> Warning: These are not well-commented codes, but should run after dependencies are installed. Unfortunately, I do not currently have time to clean and comment them. Do feel free to get in touch at sc845@cam.ac.uk about anything. Figures from the paper: Figure 1- plot_map_paper.py Figures 2-5 - plot_everything_single_event.py Figure 6 - plot_beamresults.py Figure 7 - Cross-sections are obtained from http://www.earth.ox.ac.uk/~smachine/ Figure 8 - Geochem_plot/plot_ulvzs.py Uses results from various publications as indicated in the paper. <br> Dependencies (besides ‘standard’ python libraries) ObsPy - www.obspy.org - library for seismic data processing Basemap - https://matplotlib.org/basemap/ - now deprecated library for map plotting in matplotlib Observed data and synthetics are stored PICKLE format. Metadata are stored within. Using the data and accessing metadata is demonstrated in the various script. The process to download and process the data from the IRIS database, is included in the folder ‘Download_processing_codes’. Note that after this process quality control of the traces is applied by eye. This is why the final data set is included in the repository. Synthetics are made with the ‘sandwiched’ coupled-spectral element method (‘sandwiched’-CSEM). For access, please contact the authors of Capdeville, Y., To, A. and Romanowicz, B. (2003) ‘Coupling spectral elements and modes in a spherical Earth: an extension to the “sandwich” case’, Geophysical Journal International, 154(1), pp. 44–57. doi: 10.1046/j.1365-246X.2003.01959.x. <br> Data is provided for the four events presented in the main paper. Synthetic data are stored in the subdirectory CSEM for each event. Input of the ULVZ model for each synthetic case are stored in the folder ‘Synthetic_ULVZ_input_files’. Model directories are named ULVZ160 to ULVZ180 and input files are anomalies.ULVZ160 to anomalies.ULVZ180. Vik colormap is from https://www.fabiocrameri.ch/colourmaps/
description: {"references": ["Cottaar, Martin, Li, Parai, 2022, The root to the Gal\u00e1pagos mantle plume on the core-mantle boundary, Seismica"]}
DOI: 10.6084/m9.figshare.14715572
title: Don’t make a hash of it! A thematic review of the literature relating to outcomes of cannabis regulatory change

description: Globally cannabis regulations are rapidly changing. In recent years social and political pressure, not science, has driven this change. Experience from jurisdictions that have implemented regulatory change, although relatively new, should be used to inform future policy development for other jurisdictions, assisting in addressing the wicked problem that cannabis regulations present. This review aimed to elicit underlying themes from a broad range of literature exploring the effects of regulatory change relating to cannabis. To achieve this a meta-narrative theoretical approach using inductive constant comparative analysis was used to synthesize data until thematic saturation was reached. Following a systematic literature search, 92 papers were analyzed before thematic saturation was complete. Five super-ordinate themes emerged that observed the societal and health effects following legislative and regulatory change: Normalization; Economics; Gatekeeping; Community and Health. These themes, empirically derived through a formal qualitative approach, were considered regarding cultural contexts, providing an understanding of how cannabis regulation is changing the social landscape. Consideration of the themes during future research may provide a focus point for the discussion of legislation and policy, not only relating to cannabis, but also other broad-ranging areas such as social policy, welfare, education and health.
DOI: 10.6084/m9.figshare.14715572.v1
title: Don’t make a hash of it! A thematic review of the literature relating to outcomes of cannabis regulatory change

description: Globally cannabis regulations are rapidly changing. In recent years social and political pressure, not science, has driven this change. Experience from jurisdictions that have implemented regulatory change, although relatively new, should be used to inform future policy development for other jurisdictions, assisting in addressing the wicked problem that cannabis regulations present. This review aimed to elicit underlying themes from a broad range of literature exploring the effects of regulatory change relating to cannabis. To achieve this a meta-narrative theoretical approach using inductive constant comparative analysis was used to synthesize data until thematic saturation was reached. Following a systematic literature search, 92 papers were analyzed before thematic saturation was complete. Five super-ordinate themes emerged that observed the societal and health effects following legislative and regulatory change: Normalization; Economics; Gatekeeping; Community and Health. These themes, empirically derived through a formal qualitative approach, were considered regarding cultural contexts, providing an understanding of how cannabis regulation is changing the social landscape. Consideration of the themes during future research may provide a focus point for the discussion of legislation and policy, not only relating to cannabis, but also other broad-ranging areas such as social policy, welfare, education and health.
DOI: 10.6084/m9.figshare.14899516
title: An unknown invisible intrusion. Impact of an adult family member’s problematic substance use on family life: a meta-ethnography

description: Problematic substance use (PSU) has documented consequences for the person using substances and people close to that person. This meta-ethnography aims to provide insight into how families experience family life when adult family members PSU is present. The titles and abstracts of 24,423 retrieved studies were assessed against the inclusion and exclusion criteria. Fifteen qualitative primary articles, including 393 different family members experiences, were included. The included articles described families from different countries with various socioeconomic status. <i>An unknown invisible intrusion</i> was established as the overarching metaphor. This metaphor was accompanied by three main themes: <i>Taking over the family life</i>, <i>Family survival</i>, and <i>An invisible family.</i> The theme <i>Taking over the family life</i> reflects how PSU affected the family structures and how overwhelming the families experienced these problems. The theme <i>Family survival</i> reflects how family members tried to adapt to life with PSU, while <i>An invisible family</i> reflects how families experienced loneliness and lack of help. We suggest that professionals should move from a one-sided focus on PSU to understanding the consequences as a long-lasting intrusion into family life. This includes both disciplinary development and interventions that enhance family relational practices.
DOI: 10.6084/m9.figshare.14899516.v1
title: An unknown invisible intrusion. Impact of an adult family member’s problematic substance use on family life: a meta-ethnography

description: Problematic substance use (PSU) has documented consequences for the person using substances and people close to that person. This meta-ethnography aims to provide insight into how families experience family life when adult family members PSU is present. The titles and abstracts of 24,423 retrieved studies were assessed against the inclusion and exclusion criteria. Fifteen qualitative primary articles, including 393 different family members experiences, were included. The included articles described families from different countries with various socioeconomic status. <i>An unknown invisible intrusion</i> was established as the overarching metaphor. This metaphor was accompanied by three main themes: <i>Taking over the family life</i>, <i>Family survival</i>, and <i>An invisible family.</i> The theme <i>Taking over the family life</i> reflects how PSU affected the family structures and how overwhelming the families experienced these problems. The theme <i>Family survival</i> reflects how family members tried to adapt to life with PSU, while <i>An invisible family</i> reflects how families experienced loneliness and lack of help. We suggest that professionals should move from a one-sided focus on PSU to understanding the consequences as a long-lasting intrusion into family life. This includes both disciplinary development and interventions that enhance family relational practices.
DOI: 10.5281/zenodo.7233266
title: GEnes and LAnguages TOgether

description: Cite the source of the dataset as: Barbieri et al. 2022. A global analysis of matches and mismatches between human genetic and linguistic histories. PNAS. DOI: 10.1073/pnas.2122084119
DOI: 10.15139/s3/ucnh0g
title: French guide -- Interview guide for individual non-married adolescents (15-19)

description: In-depth interview guides that were used in interviews with ten (10) never-married adolescent girls between the ages of 15 and 19. Six (6) of the adolescent girls had never used family planning (but were sexually active) and four (04) were current users.
DOI: 10.17036/researchdata.aston.ac.uk.00000582
title: CRLB approaching phase and channel estimation code
DOI: 10.15139/s3/6uwkpn
title: French guide -- interview guide for individual female community leaders

description: In-depth interview guides for interviews conducted with six (06) female community leaders in the Banfora and Bobo-Dioulasso region. Three (03) community leaders were interviewed in each of these two zones.
DOI: 10.15156/bio/sh045253.07fu
title: SH045253.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045254.07fu
title: SH045254.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045255.07fu
title: SH045255.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045256.07fu
title: SH045256.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045257.07fu
title: SH045257.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045258.07fu
title: SH045258.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh045259.07fu
title: SH045259.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.