cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21766910
title: Log file of IQTREE individual ML gene trees from each loci in the 50 % complete ultraconserved elements dataset

description: Log file of IQTREE individual ML gene trees from each loci in the 50 % complete ultraconserved elements dataset
DOI: 10.6084/m9.figshare.21766922
title: Log file of IQTREE individual ML gene trees from each loci in the 75 % complete ultraconserved elements dataset

description: <strong>Log file of IQTREE individual ML gene trees from each loci in the 75 % complete ultraconserved elements dataset</strong>
DOI: 10.34740/kaggle/dsv/4755850
title: BBC News
DOI: 10.26179/mqrf-pp81
title: Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples
DOI: 10.35077/ace-hat
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839950125

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839950125', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.06.351', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'22', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'839950125', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24461', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/ace-hen
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839923944

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839923944', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.06.351', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'22', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'839923944', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24289', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/ace-hex
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839222460

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 839222460', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.29.144', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'65', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'839222460', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24397', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/ace-hid
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835859530

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835859530', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.03.306', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'21', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'835859530', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24426', Locations:'ITG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/ace-hip
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835857228

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835857228', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.03.306', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'21', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'835857228', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24353', Locations:'ITG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/ace-hit
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835648767

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835648767', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.03.306', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'21', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'835648767', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24287', Locations:'ITG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.5281/zenodo.7093076
title: A computational study on the energy efficiency of species production by pulsed streamer discharges in air

description: This dataset contains the data used to generate the results presented in the article "A computational study on the energy efficiency of species production by pulsed streamer discharges in air". This dataset includes (1) the source code; (2) transport data files, which contain a list of included reactions, with transport coefficients and their reaction rate coefficients; (3) configuration files for running the simulations and (4) output log files, which contain information about the physics and numerical properties of the simulations.
DOI: 10.5281/zenodo.7093075
title: A computational study on the energy efficiency of species production by single-pulse streamers in air

description: This dataset contains the data used to generate the results presented in the article "A computational study on the energy efficiency of species production by single-pulse streamers in air". This dataset includes (1) the source code; (2) the reaction set and transport data file, which contain a list of included reactions, with transport coefficients and their reaction rate coefficients; (3) configuration files for running the simulations and (4) output log files, which contain information about the physics and numerical properties of the simulations.
DOI: 10.5281/zenodo.7471005
title: A computational study on the energy efficiency of species production by single-pulse streamers in air

description: This dataset contains the data used to generate the results presented in the article "A computational study on the energy efficiency of species production by single-pulse streamers in air". This dataset includes (1) the source code; (2) the reaction set and transport data file, which contain a list of included reactions, with transport coefficients and their reaction rate coefficients; (3) configuration files for running the simulations and (4) output log files, which contain information about the physics and numerical properties of the simulations.
DOI: 10.35077/ace-hog
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835631800

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835631800', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.03.306', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'21', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'835631800', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24486', Locations:'ITG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.34740/kaggle/dsv/4755942
title: OntoUML/UFO Catalog
DOI: 10.35077/ace-hop
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835611255

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 835611255', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.03.306', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'21', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'835611255', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24485', Locations:'ITG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.48505/nims.3843
title: Raw data files for Fig. 7 Auger depth profiles in "Auger Depth Profiling Analysis of HfO2/Si Specimen Using an Ultra Low Angle Incidence Ion Beam"

description: We have investigated the Auger depth profiling analysis of HfO2/Si by the glancing-angle ion beam sputtering method at an incident angle of 7 degree from the sample surface with argon ion beam. The depth resolutions of the O KLL interface profiles were 0.9 nm and 1.5 nm, at the ion-beam acceleration voltage of 2.0 kV and 3.0 kV re-spectively, which were better than the depth resolutions at a commonly-used incident angle of 51 degree. However, the ion-beam-induced reduction of HfO2 was not suppressed by the glancing-angle ion beam sputtering at the ion acceleration voltage of 0.5 kV, which is expected to be the lowest damage sputtering condition in this study. The reduction of HfO2 due to preferential sputtering of oxygen was observed by the intensity ratio of O KLL and Hf NVV depth profiles. It was found that the ratio of preferential sputtering depends on the ion incidence angle and the ion acceleration voltage. Under the glancing-angle condition, the ratio of preferential sputtering greatly de-pended on the ion accelerating voltage, and it was found that the lower the ion acceleration voltage is, the easier it is for O to be sputtered than Hf. On the other hand, under the commonly-used incident angle conditions, the ratio of preferential sputtering did not depend much on the ion acceleration voltage. The dependency of the ratio of preferential sputtering on the ion incidence angle can be explained by the difference in sputtering models depend-ing on the ion incidence angle. It was found that the O KLL depth profiles showed partial recovery of the oxygen intensity near the interface of HfO2/Si, which can be related to oxygen generated by the ion-beam-induced decom-position of the diffusion layer at the interface. In addition, the glancing-angle ion beam enables the reduction of the effect of recoil implantation of Hf atoms into the Si substrate.
DOI: 10.5517/ccdc.csd.cc2c2yyc
title: CCDC 2177593: Experimental Crystal Structure Determination

description: Related Article: Sk Khalid Rahaman, Taposi Chatterjee, Basudeb Dutta, Goutam Pramanik, Saikh Mohammad Wabaidur, Essam A. Al-Ammar, Maria Christy, Mohammad Hedayetullah Mir, Seikh Mafiz Alam|2023|J.Mol.Struct.|1276|134682|doi:10.1016/j.molstruc.2022.134682
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5jhl
title: CCDC 2180059: Experimental Crystal Structure Determination

description: Related Article: Abhijit Manna, Harshit Joshi, Vinod K. Singh|2022|J.Org.Chem.|87|16755|doi:10.1021/acs.joc.2c02402
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c64d4
title: CCDC 2180645: Experimental Crystal Structure Determination

description: Related Article: Jia Xu, An Chen, Ting Cai|2022|J.Pharm.Sci.|112|282|doi:10.1016/j.xphs.2022.10.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c64f5
title: CCDC 2180646: Experimental Crystal Structure Determination

description: Related Article: Jia Xu, An Chen, Ting Cai|2022|J.Pharm.Sci.|112|282|doi:10.1016/j.xphs.2022.10.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6pdp
title: CCDC 2181172: Experimental Crystal Structure Determination

description: Related Article: Han Yan, Zi-Wei Che, Wen-Bin Sun|2023|New J.Chem.|47|140|doi:10.1039/D2NJ03544H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6pfq
title: CCDC 2181173: Experimental Crystal Structure Determination

description: Related Article: Han Yan, Zi-Wei Che, Wen-Bin Sun|2023|New J.Chem.|47|140|doi:10.1039/D2NJ03544H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.