cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7693667
title: Montipora capitata multi-omics supplemental tables

description: Supplemental tables for <em>Montipora capitata</em> multi-omics study. <strong>Table S1.</strong> Read statistics for the microbiome 16S rRNA data from the four <em>M. capitata</em> colonies (n=3 per treatment/time point/colony). <strong>Table S2.</strong> Protein and transcript FC values for genes identified in proteomic data. The 138 stress-response related genes are also highlighted. <strong>Table S3.</strong> Major KEGG pathways used to filter proteins identified in the proteomic data. <strong>Table S4.</strong> Results from the permutational MANOVA (PERMANOVA) tests run on the transcriptomic, proteomic, and metabolomic datasets. <strong>Table S5.</strong> Results from the statistical tests run on the alpha- and beta-diversity metrics.
DOI: 10.5281/zenodo.7693579
title: Mid-Miocene Acceleration of Strike-slip Deformation in The Tian Shan, Central Asia

description: This is a repository containing thermochronology data and corresponding references used in the exhumation rate inversion in the manuscript: Wang, S., Jiao, R., Zhang, H., Zhang, J., Pang, J., (2023) Mid-Miocene Acceleration of Strike-slip Deformation in The Tian Shan, Central Asia. Send questions to siyuwang@uvic.ca.
DOI: 10.5281/zenodo.7693578
title: Mid-Miocene Acceleration of Strike-slip Deformation in The Tian Shan, Central Asia

description: This is a repository containing thermochronology data and corresponding references used in the exhumation rate inversion in the manuscript: Wang, S., Jiao, R., Zhang, H., Zhang, J., Pang, J., (2023) Mid-Miocene Acceleration of Strike-slip Deformation in The Tian Shan, Central Asia. Send questions to siyuwang@uvic.ca.
DOI: 10.5281/zenodo.7693562
title: Computational models of immunity for pertussis boost (CMI-PB) multiomics datasets used for the first challenge

description: <strong>Systems vaccinology is increasingly generating massive datasets to characterize the immune state of individuals before and after vaccination, which require data science to interpret them. These studies are used to draw conclusions on what drives different individuals to have different vaccine responses. </strong>
DOI: 10.5281/zenodo.7693561
title: Computational models of immunity for pertussis boost (CMI-PB) multiomics datasets used for the first challenge

description: <strong>Systems vaccinology is increasingly generating massive datasets to characterize the immune state of individuals before and after vaccination, which require data science to interpret them. These studies are used to draw conclusions on what drives different individuals to have different vaccine responses. </strong>
DOI: 10.5281/zenodo.7415609
title: Montipora capitata multi-omics supplemental tables

description: Supplemental tables for <em>Montipora capitata</em> multi-omics study. <strong>Table S1.</strong> Read statistics for the microbiome 16S rRNA data from the four <em>M. capitata</em> colonies (n=3 per treatment/time point/colony). <strong>Table S2.</strong> Protein and transcript FC values for genes identified in proteomic data. The 138 stress-response related genes are also highlighted. <strong>Table S3.</strong> Major KEGG pathways used to filter proteins identified in the proteomic data. <strong>Table S4.</strong> Results from the permutational MANOVA (PERMANOVA) tests run on the transcriptomic, proteomic, and metabolomic datasets. <strong>Table S5.</strong> Results from the statistical tests run on the alpha- and beta-diversity metrics. <strong>NOTE on v1.0</strong>: Due to an error during sorting, the gene names in Supplemental_Table_S2.xlsx were misaligned with their associated accumulation values. Please use the latest version of this dataset, which contains the corrected file.
DOI: 10.26093/cds/vizier.36660187
title: Gl514 RVs and activity diagnostics

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'A quarter century of spectroscopic monitoring of the nearby M dwarf Gl514. A super-Earth on an eccentric orbit moving in and out of the habitable zone.' (bibcode: 2022A&A...666A.187D)
DOI: 10.5281/zenodo.7693696
title: Engineering Graph States of Atomic Ensembles by Photon-Mediated Entanglement

description: This is data associated with the paper "Engineering Graph States of Atomic Ensembles by Photon-Mediated Entanglement" (arXiv).
DOI: 10.5281/zenodo.7693695
title: Engineering Graph States of Atomic Ensembles by Photon-Mediated Entanglement

description: This is data associated with the paper "Engineering Graph States of Atomic Ensembles by Photon-Mediated Entanglement" (arXiv).
DOI: 10.5281/zenodo.7693698
title: База данных по применению минеральных удобрений в лесном хозяйстве и их влиянию на углеродный бюджет лесов

description: Поглощение и сохранение углерода является одной из важных экосистемных функций леса. Современной науке ставится задача изучить возможности усилить данную функцию с целью противостояния роста концентрации углекислого газа в атмосфере. Лесохозяйственные мероприятия, в частности применение минеральных удобрений, являются эффективным способом увеличения производительности лесов и усиления их углеродно-поглощающей способности. Данный обзор ставит целью обобщить накопленный опыт применения минеральных удобрений в бореальных и умеренных лесах с точки зрения углеродо-депонирующей функции леса.
DOI: 10.5281/zenodo.7693697
title: База данных по применению минеральных удобрений в лесном хозяйстве и их влиянию на углеродный бюджет лесов

description: Поглощение и сохранение углерода является одной из важных экосистемных функций леса. Современной науке ставится задача изучить возможности усилить данную функцию с целью противостояния роста концентрации углекислого газа в атмосфере. Лесохозяйственные мероприятия, в частности применение минеральных удобрений, являются эффективным способом увеличения производительности лесов и усиления их углеродно-поглощающей способности. Данный обзор ставит целью обобщить накопленный опыт применения минеральных удобрений в бореальных и умеренных лесах с точки зрения углеродо-депонирующей функции леса.
DOI: 10.5281/zenodo.7460461
title: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Protocol And Dataset

description: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Dataset. This dataset includes: The tools executable files and JSON representations. The tools screenshots. The participants classification data. Questionnaire Form. Training Materials. Testing Tasks. <strong>Our Paper is at ICPC conference with title</strong>: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: A Controlled Experiment
DOI: 10.5281/zenodo.7460462
title: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Protocol And Dataset

description: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Dataset
DOI: 10.5281/zenodo.7683339
title: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Protocol And Dataset

description: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Dataset. This dataset includes: The tools executable files and JSON representations. The tools screenshots. The participants classification data. Questionnaire Form. Training Materials. Testing Tasks. <strong>Our Paper is at ICPC conference with title</strong>: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: A Controlled Experiment
DOI: 10.5281/zenodo.7693694
title: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Protocol And Dataset

description: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: Dataset. This dataset includes: The tools executable files and JSON representations. The tools screenshots. The participants classification data. Questionnaire Form. Training Materials. Testing Tasks. <strong>Our Paper is at ICPC conference with title</strong>: Comparing 2D and Augmented Reality Visualizations for Microservice System Understandability: A Controlled Experiment
DOI: 10.24431/rw1k7d6
title: Passive acoustic recordings from 165 m depth on the Gulf Ecosystem Observatory mooring in the Gulf of Alaska 2019-2020

description: This dataset includes . These data are part of the Northern Gulf of Alaska Long Term Ecological Research (NGA LTER) program. The LTER program is a National Science Foundation–funded network of 28 sites nationwide that focus on the influence of long-term and large-scale phenomenon on ecosystems. Additional funding for sampling is provided by the North Pacific Research Board (NPRB), the Alaska Ocean Observing System (AOOS), and the Exxon Valdez Oil Spill Trustee Council (EVOS) via the Gulf Watch Alaska program.
DOI: 10.6084/m9.figshare.22207420
title: YRWA Pectoralis Muscle Data.csv

description: Experimental Data from Groom et al. " Flight muscle size reductions and functional changes following long-distance flight under variable humidity conditions in a migratory warbler", currently under review. <br> Contains morphometrics, experimental flight, body composition, pectoralis size, and enzyme activity data.
DOI: 10.6084/m9.figshare.22207420.v1
title: YRWA Pectoralis Muscle Data.csv

description: Experimental Data from Groom et al. " Flight muscle size reductions and functional changes following long-distance flight under variable humidity conditions in a migratory warbler", currently under review. <br> Contains morphometrics, experimental flight, body composition, pectoralis size, and enzyme activity data.
DOI: 10.3886/e185721
title: German Twitter COVID-19 vaccine posts

description: COVID-19 vaccination posts from Germany
DOI: 10.24431/rw1k7d7
title: Surface meteorological data from the Gulf Ecosystem Observatory moorings in the Gulf of Alaska, 2019-2021

description: This dataset describes meteorological data measured from surface from buoys on Gulf Ecosystem Obervatory moorings in the Northern gulf of Alaska. Measurements include barometric pressure, Relative humidity, air temperature, dewpoint, wind speed and direction, as well as photosynthetically active radiation and chlorophyll-a concnetration. Data are presented as csv files, with one annual file from each met station. In 2019 there were two met stations deployed, one each on the buoys from the GEO1 and GEO3 moorings. Beginning in 2020, only the GEO3 buoy and met station were deployed. These data are part of the Northern Gulf of Alaska Long Term Ecological Research (NGA LTER) program. The LTER program is a National Science Foundation–funded network of 28 sites nationwide that focus on the influence of long-term and large-scale phenomenon on ecosystems. Additional funding for sampling is provided by the North Pacific Research Board (NPRB), the Alaska Ocean Observing System (AOOS), and the Exxon Valdez Oil Spill Trustee Council (EVOS) via the Gulf Watch Alaska program.
DOI: 10.5281/zenodo.7690016
title: Experimental Results for the AAAI 2023 Paper "Towards Automated Modeling Assistance: An Efficient Approach for Repairing Flawed Planning Domains"

description: This is the collection of all experimental outputs described in the paper "Towards Automated Modeling Assistance: An Efficient Approach for Repairing Flawed Planning Domains" by Songtuan Lin, Alban Grastien, and Pascal Bercher, accepted by AAAI 2023. A detailed explanation about the contents can be found in the README.md file.
DOI: 10.5281/zenodo.7690015
title: Experimental Results for the AAAI 2023 Paper "Towards Automated Modeling Assistance: An Efficient Approach for Repairing Flawed Planning Domains"

description: This is the collection of all experimental outputs described in the paper "Towards Automated Modeling Assistance: An Efficient Approach for Repairing Flawed Planning Domains" by Songtuan Lin, Alban Grastien, and Pascal Bercher, accepted by AAAI 2023. A detailed explanation about the contents can be found in the README.md file.
DOI: 10.24431/rw1k7d8
title: Conductivity, temperature, pressure, and nitrate data from an ITP on the Gulf Ecosystem Observatory mooring in the Gulf of Alaska, 2019-2020

description: This dataset describes conductivity, temperature, pressure, and nitrate measurements from an ITP deployed on the Gulf Ecosystem Observatory mooring (GEO1) deployed in the Northern Gulf of Alaska from July 2019-July 2020. These data are delivered as .txt files representing unporcessed, ASCII versions of the data. These data are part of the Northern Gulf of Alaska Long Term Ecological Research (NGA LTER) program. The LTER program is a National Science Foundation–funded network of 28 sites nationwide that focus on the influence of long-term and large-scale phenomenon on ecosystems. Additional funding for sampling is provided by the North Pacific Research Board (NPRB), the Alaska Ocean Observing System (AOOS), and the Exxon Valdez Oil Spill Trustee Council (EVOS) via the Gulf Watch Alaska program.
DOI: 10.24431/rw1k7d9
title: Conductivity, temperature, and pressure data from an SBE37 CTD at 205 m depth on the Gulf Ecosystem Observatory mooring in the Gulf of Alaska, 2019-2020

description: This dataset describes conductivity, temperature, and pressure readings from a Seabird SBE37 CTD device deployed at 205 m on the Gulf Ecosystem Observatory mooring (GEO1) in the Northern Gulf of Alaska from July 2019-July 2020. These data are presented as ASCII-encoded files in Seabird native export formats (.asc, .cnv, .hdr, .hex, .xml, .xmlcon). These data have not been processed or quality controlled. These data are part of the Northern Gulf of Alaska Long Term Ecological Research (NGA LTER) program. The LTER program is a National Science Foundation–funded network of 28 sites nationwide that focus on the influence of long-term and large-scale phenomenon on ecosystems. Additional funding for sampling is provided by the North Pacific Research Board (NPRB), the Alaska Ocean Observing System (AOOS), and the Exxon Valdez Oil Spill Trustee Council (EVOS) via the Gulf Watch Alaska program.
DOI: 10.6084/m9.figshare.22197592
title: Data from Suraci et al. 2023. Ecosphere

description: Datasets used in the analyses described in: <br> Suraci JP, Farwell LS, Littlefield CE, Freeman PT, Zachmann LJ, Landau VA, Anderson JJ, Dickson BG. 2023. Achieving conservation targets by jointly addressing climate change and biodiversity loss. <em>Ecosphere</em> <br> Files include composite index models for the conterminous United States (CONUS) and Alaska, as well as the indicator layers used in deriving those composite index models that are not already publicly available elsewhere (i.e., ecological connectivity and ecological integrity for CONUS and Alaska). See included METADATA file for dataset details. Full details of analyses are described in the above publication. <br>
DOI: 10.6084/m9.figshare.20956339.v2
title: A Snapshot of Online Wildlife Trade: Australian e-commerce trade of native and alien pets

description: Dataset summarising the total number of advertisements and animals for each species detected in online trade on Australian surface web e-commerce from 03/12/2019 to 20/03/2020. Additional dataset summarising the total number of advertisements and animals for each region (as designated by e-commerce platforms) from 03/12/2019 to 20/03/2020. Note that not all online listings provided location information.
DOI: 10.21227/vz4q-n384
title: Dataset

description: This is a dataset of the 2-area, 3-area, and 5-area interconnected power systems built in our article. By downloading them, you can use them to test and analyze the distributed optimization method presented in our article and other literature.
DOI: 10.6084/m9.figshare.22207594
title: Supplementary Materials for 'Virtual Reality and Surgical Oncology'

description: Supplementary Materials for the Publication of 'Virtual Reality and Surgical Oncology' <br> It contains: 1. Statement of Search Strategies and Sources of Information, 2. Summary Table of Study Characteristics, 3. Summary of Use of VR-Assisted Tool in Operative Planning and 4. Illustration of VR-Simulated Operating Theatre and Open Abdominal Hysterectomy in a Zambian Teaching Hospital.
DOI: 10.6084/m9.figshare.22207498
title: CNN_classification_earthquake_collapse_explosion

description: Waveforms of earthquakes, collapses, and explosions
DOI: 10.6084/m9.figshare.22207498.v1
title: CNN_classification_earthquake_collapse_explosion

description: Waveforms of earthquakes, collapses, and explosions
DOI: 10.48324/dandi.000454/0.230302.2331
title: Guide to the construction and use of an adaptive optics two-photon microscope with direct wavefront sensing

description: Two-photon microscopy, combined with appropriate optical labeling, has enabled the study of structure and function throughout animals and their organ systems, especially nervous systems. This methodology enables, for example, the measurement and tracking of sub-micrometer structures within brain cells, the spatio-temporal mapping of spikes in individual neurons, and the spatio-temporal mapping of transmitter release in individual synapses. Yet the spatial resolution of two-photon microscopy rapidly degrades as imaging is attempted at depths more than a few scattering lengths into tissue, i.e., below the superficial layers that constitute the top 300 to 400 µm of neocortex. To obviate this limitation, we measure the wavefront of the guide star at the focus of the excitation beam and utilize adaptive optics that alters the incident wavefront to achieve an improved focal volume. We describe the construction, calibration, and operation of a two-photon microscope that incorporates adaptive optics to restore diffraction-limited resolution throughout the nearly 900 µm depth of mouse cortex. Our realization utilizes a guide star formed by excitation of red-shifted dye within the blood serum to directly measure the wavefront. We incorporate predominantly commercial optical, optomechanical, mechanical, and electronic components; computer aided design models of the exceptional custom components are supplied. The resultant adaptive-optics two-photon microscope is modular and allows for expanded imaging and optical excitation capabilities. We demonstrate our methodology in mouse neocortex by imaging the morphology of somatostatin-expressing neurons that lie 700 µm beneath the pia, calcium dynamics of layer 5b projection neurons, and thalamocortical glutamate transmission to L4 neurons.
DOI: 10.5517/ccdc.csd.cc2bq6v4
title: CCDC 2166306: Experimental Crystal Structure Determination

description: Related Article: J. Jirát, J. Rohlíček, J. Kaminský, T. Jirkal, L. Ridvan, E. Skořepová, V. Zvoníček, M. Dušek, M. Šoóš|2023|IUCrJ|10|210|doi:10.1107/S2052252523001197
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bnp8z
title: CCDC 2164831: Experimental Crystal Structure Determination

description: Related Article: J. Jirát, J. Rohlíček, J. Kaminský, T. Jirkal, L. Ridvan, E. Skořepová, V. Zvoníček, M. Dušek, M. Šoóš|2023|IUCrJ|10|210|doi:10.1107/S2052252523001197
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq6w5
title: CCDC 2166307: Experimental Crystal Structure Determination

description: Related Article: J. Jirát, J. Rohlíček, J. Kaminský, T. Jirkal, L. Ridvan, E. Skořepová, V. Zvoníček, M. Dušek, M. Šoóš|2023|IUCrJ|10|210|doi:10.1107/S2052252523001197
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7693808
title: Data for: The Neonicotinoid Imidacloprid Impairs Sucrose Solution Consumption, Learning and Locomotor Activity Levels In Bumblebees (Bombus Terrestris)

description: # README The following files are for creating the figures from the paper: ## `plot_flowervisits_nectar.ipynb` Jupyter notebook that creates the figures concerning flower visits, nectar consumption and the proportion of empty honeypots. ## `plot_activity.py` Python script that takes trajectory fragments from video analysis and computes the locomotor activity level through making histograms of bumblebee speeds. Makes two figures that are equivalent to the figure on locomotor activity in the paper. ## `statistical analysis.py` R markdown notebook that performs all the hypothesis testing for the paper. ## Data These files contain the data, and are located in the folder called `data`. `activity/activityproportions.csv` contains the computed locomotor activity level for easy plotting. `boldata/boldata.csv` contains data about the nectar bag weight before and after experiment and the counted number of empty and full honeypots. Used by `plot_flowervisits_nectar.ipynb` `flower_data/flowerData.csv` contains the computed number of visits to blue and yellow flowers per hive for easy plotting. `humlevideo_production/*/traj*_trajectories*.csv` contains constructed trajectories from all experiments seen from both cameras. These are being used by the script `plot_activity`. `humlevideo_production/*/traj*.json` contains data about the occurence of bees on flowers in each frame in each experiment. `landinger_csv` contains data about landings, that have been extracted from the `humlevideo_production/*/traj*.json` files. Used by `plot_flowervisits_nectar.ipynb`.
DOI: 10.5281/zenodo.7693807
title: Data for: The Neonicotinoid Imidacloprid Impairs Sucrose Solution Consumption, Learning and Locomotor Activity Levels In Bumblebees (Bombus Terrestris)

description: # README The following files are for creating the figures from the paper: ## `plot_flowervisits_nectar.ipynb` Jupyter notebook that creates the figures concerning flower visits, nectar consumption and the proportion of empty honeypots. ## `plot_activity.py` Python script that takes trajectory fragments from video analysis and computes the locomotor activity level through making histograms of bumblebee speeds. Makes two figures that are equivalent to the figure on locomotor activity in the paper. ## `statistical analysis.py` R markdown notebook that performs all the hypothesis testing for the paper. ## Data These files contain the data, and are located in the folder called `data`. `activity/activityproportions.csv` contains the computed locomotor activity level for easy plotting. `boldata/boldata.csv` contains data about the nectar bag weight before and after experiment and the counted number of empty and full honeypots. Used by `plot_flowervisits_nectar.ipynb` `flower_data/flowerData.csv` contains the computed number of visits to blue and yellow flowers per hive for easy plotting. `humlevideo_production/*/traj*_trajectories*.csv` contains constructed trajectories from all experiments seen from both cameras. These are being used by the script `plot_activity`. `humlevideo_production/*/traj*.json` contains data about the occurence of bees on flowers in each frame in each experiment. `landinger_csv` contains data about landings, that have been extracted from the `humlevideo_production/*/traj*.json` files. Used by `plot_flowervisits_nectar.ipynb`.