cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/v78yf4tnmm
title: Dataset for "Role of Friction on the Formation of Confined Granular Structures"

description: In this dataset, you will find information concerning experiments described in the article entitled “Role of Friction on the Formation of Confined Granular Structures”. It contains data on PTFE particles (see the section "related links" to access ABS data) for: 1. scripts for replicating the image processing and post-processing. There are examples of figures concerning experiments carried out at the fluidized bed bench; 2. data files from the profilometer, the rugosity measurements, and rheometer measurements; 3. Files for plotting figures in Gnuplot with PostScript terminal.
DOI: 10.6084/m9.figshare.20278341.v1
title: A national-scale land cover reference dataset from local crowdsourcing initiatives in Indonesia

description: This collection represents geographically diverse, temporally consistent, and nationally relevant land cover (LC) reference data collected by visual interpretation of very high spatial resolution imagery, in a national-scale crowdsourcing campaign (targeting seven generic LC classes) and a series of expert workshops (targeting seventeen detailed LC classes) in Indonesia. The interpreters were local citizen scientists (crowd/non-experts) and local LC visual interpretation experts from different regions in the country. This helps to ensure that the LC map products are relevant and can contribute effectively to the actionable information needs of the national and sub-national stakeholders and end users of the LC products within the country. We provide the raw LC reference dataset, as well as a quality-filtered dataset, along with the quality assessment indicators. The dataset is relevant for the LC mapping community, i.e., researchers and practitioners, as reference data for training ML algorithms and for map accuracy assessment (with appropriate quality-filters applied). The dataset is also useful for the citizen science community, i.e., as a sizable empirical dataset to investigate the potential and limitations of the crowd/non-experts, demonstrated for LC mapping in Indonesia for the first time to our knowledge, within the context of complementing traditional data collection by expert interpreters. The detail description of the data and the data collection methodology can be found in our paper below. <br> Hadi, Yowargana, P., Zulkarnain, M.T. <em>et al.</em> A national-scale land cover reference dataset from local crowdsourcing initiatives in Indonesia. <em>Sci Data</em> <strong>9</strong>, 574 (2022). https://doi.org/10.1038/s41597-022-01689-5
DOI: 10.6084/m9.figshare.23522679.v1
title: Replication Package for "Fixing Dockerfile Smells: An Empirical Study"

description: This repository contains the replication package for "Fixing Dockerfile Smells: An Empirical Study". For more details, check the attached README.https://github.com/grosa1/dockleanerAbstract: Docker is the de facto standard for software containerization. A Dockerfile contains the requirements to build a Docker image containing a target application. There are several best practice rules for writing Dockerfiles, but the developers do not always follow them. Violations of such practices, known as Dockerfile smells, can negatively impact the reliability and performance of Docker images. Previous studies showed that Dockerfile smells are widely diffused, and there is a lack of automatic tools that support developers in fixing them. However, it is still unclear what Dockerfile smells get fixed by developers and to what extent developers would be willing to fix smells in the first place. The aim of our study is twofold. First, we want to understand what Dockerfiles smells receive more attention from developers, i.e., are fixed more frequently in the history of open-source projects. Second, we want to check if developers are willing to accept changes aimed at fixing Dockerfile smells (e.g., generated by an automated tool), to understand if they care about them. We evaluated the survivability of Dockerfile smells from a total of 53,456 unique Dockerfiles, where we manually validated a large sample of smell-removing commits to understand (i) if developers performed the change with the intention of removing bad practices, and (ii) if they were aware of the removed smell. In the second part, we used a rule-based tool to automatically fix Dockerfile smells. Then, we proposed such fixes to developers via pull requests. Finally, we quantitatively and qualitatively evaluated the outcome after a monitoring period of more than 7 months. The results of our study showed that most developers pay more attention to changes aimed at improving the performance of Dockerfiles (image size and build time). Moreover, they are willing to accept the fixes for the most common smells, with some exceptions (e.g., missing version pinning for OS packages).
DOI: 10.6084/m9.figshare.11872227.v1
title: Extracellular recording of cerebellar Purkinje cells and labels of complex spikes from expert

description: 159 extracellular recordings of cerebellar Purkinje cells and labels of complex spikes from expert.
DOI: 10.6084/m9.figshare.22691131.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.29132639.v1
title: Data for "Introgression despite minimal hybridization: mating system modulates phenotypic associations with introgression in <i>Clarkia</i>"

description: · The ecological factors and phenotypes that modulate the tremendous variability in the extent of introgression are unclear. Mating system transitions are particularly common and involve a suite of phenotypic changes that often contribute to reproductive isolation. However, the extent to which these phenotypic changes influence the extent of gene flow during speciation is unknown.· Using 410 nuclear and 360 chloroplast genomes, we quantified introgression between selfing-outcrossing sister <i>Clarkia</i><i> </i>taxa. We used common garden and geospatial data to test for associations between individual admixture proportions and phenotypic and spatial variation within contact zones.· We found substantial admixture in the outcrossing taxon across contact zones in both nuclear and chloroplast genomes, but no early generation hybrids. Introgression was asymmetric, primarily from the selfing to outcrossing taxon. Remarkably, we found complete chloroplast capture by the outcrosser in the most northern population. Although the extent of admixture varied among contact zones of both taxa, only the selfer displayed spatially structured and phenotypic associations with the extent of introgression within contact zones.· Despite recent divergence and evidence of historical introgression, premating isolating mechanisms prevent hybridization. Mating system modulates the direction of introgression and influences fine scale patterns of individual admixture.
DOI: 10.6084/m9.figshare.11322116.v2
title: LGF clustering for genes located in cps/kps loci

description: Two tables linking protein sequences found in cps and kps loci (one table each) with the locus gene families (LGFs) into which these proteins were assigned.
DOI: 10.6084/m9.figshare.16621474.v1
title: Supplementary Material for: Passive Tracer Visualization to Simulate Aerodynamic Virus Transport in Noninvasive Respiratory Support Methods

description: <b><i>Background:</i></b> Various forms of noninvasive respiratory support methods are used in the treatment of hypoxemic CO­VID-19 patients, but limited data are available about the corresponding respiratory droplet dispersion. <b><i>Objectives:</i></b> The aim of this study was to estimate the potential spread of infectious diseases for a broad selection of oxygen and respiratory support methods by revealing the therapy-induced aerodynamics and respiratory droplet dispersion. <b><i>Methods:</i></b> The exhaled air-smoke plume from a 3D-printed upper airway geometry was visualized by recording light reflection during simulated spontaneous breathing, standard oxygen mask application, nasal high-flow therapy (NHFT), continuous positive airway pressure (CPAP), and bilevel positive airway pressure (BiPAP). The dispersion of 100 μm particles was estimated from the initial velocity of exhaled air and the theoretical terminal velocity. <b><i>Results:</i></b> Estimated droplet dispersion was 16 cm for unassisted breathing, 10 cm for Venturi masks, 13 cm for the nebulizer, and 14 cm for the nonrebreathing mask. Estimated droplet spread increased up to 34 cm in NHFT, 57 cm in BiPAP, and 69 cm in CPAP. A nonsurgical face mask over the NHFT interface reduced estimated droplet dispersion. <b><i>Conclusions:</i></b> During NHFT and CPAP/BiPAP with vented masks, extensive jets with relatively high jet velocities were observed, indicating increased droplet spread and an increased risk of droplet-driven virus transmission. For the Venturi masks, a nonrebreathing mask, and a nebulizer, estimated jet velocities are comparable to unassisted breathing. Aerosols are transported unboundedly in all these unfiltered therapies. The adequate use of protective measures is of vital importance when using noninvasive unfiltered therapies in infectious respiratory diseases.
DOI: 10.6084/m9.figshare.19106429.v3
title: Morphometric analysis toward mapping relative tectonic activity of Lebanon

description: The data contains the following:- RATM raster- Watersheds shapefile
DOI: 10.6084/m9.figshare.24596094.v3
title: NSD

description: Streamflow in the United States: Characteristics, trends, regime shifts, and extremes
DOI: 10.6084/m9.figshare.24600240.v1
title: Annual, field-scale crop water consumption estimates

description: This dataset is made up of all agricultural lands in California's Central Valley, broken up into 70m pixels. It includes information on their characteristics (location, soil quality, topography), as well as their potential evapotranspiration (ET) and total ET (variable name ET_obs) for the years 2016, 2018, and 2019. Total ET is divided into naturally-occurring ET (variable name ET_pred) (the ET that would be present regardless of the presence of agriculture, if the field were fallow) and agricultural ET (variable name ag_ET) (the remainder).

Description of variables: 
x: Longitude (degrees)
y: Latitude (degrees)
year: Year 
cropnames: crop groups
subcropnames: crop type
Elevation: Elevation (meters)
Slope: Slope (radians)
Aspect: Aspect (radians)
Soil: California Storie Index
TWI: Topographic Wetness Index
NAME: County
coverage_fraction: fraction of pixel within the county
ET: Evapotranspiration (OpenET) (cm/month)
ET_pred: Naturally-occurring ET (Modelled) (cm/month)
PET: Potential evapotranspiration
ag_ET: Agricultural evapotranspiration (ET - ET_pred) (cm/month)
DOI: 10.6084/m9.figshare.27918267.v1
title: Long non-coding RNAs direct the SWI/SNF complex to cell type-specific enhancers

description: Source Data for Manuscript "Long non-coding RNAs direct the SWI/SNF complex to cell type-specific enhancers", Oo et al., Nature Communications.
DOI: 10.17632/gpd7r5tngg
title: Imagery dataset of interior and exterior northern architectural spaces for photobiological lighting analyses

description: This dataset presents images of interior and exterior ambiances to calculate and represent the photobiological responses of existing architecture in northern territories. The images were obtained using a Raspberry Pi Camera Module (RPiCM) mounted in a holder designed to position the camera at a fixed point. This holder allows to rotate the camera by 30° and take 12 high dynamic range (HDR) images to create a panoramic image. The HDR images facilitated the analysis of photobiological effects concerning photopic light intensity for vision, and the spectral dominance regarding vision and circadian stimulation. This dataset consists of 13 captures in 7 interior spaces and 6 exterior spaces, each divided into 4 subfolders containing the photographic data: the sequence of low-dynamic range images (LDR) to form the high-dynamic range images (HDR), the tone-mapped images obtained from the HDR, the analysis of photopic luminance and false color, and 360° panoramic images(tone-mapped HDR, false color luminance, and spectral dominance). Each space is also supplemented with photometric data presented as a .csv file which contains lux and EML units obtained through a radiometer.
DOI: 10.6084/m9.figshare.11825742.v1
title: AgTile-US

description: The 30-m Gridded Tile Drainage Data for the Contiguous United States<br>Cite this data:<br>Valayamkunnath, P., Barlage, M., Chen, F. et al. Mapping of 30-meter resolution tile-drained croplands using a geospatial modeling approach. Sci Data 7, 257 (2020). https://doi.org/10.1038/s41597-020-00596-x<br><br>Download citation<br>
DOI: 10.6084/m9.figshare.20288730.v1
title: Data Set from Forecasting of In Situ Electron Energy Loss Spectroscopy

description: Electron energy loss spectroscopy (EELS) data from beam-induced phase transition in a SrTiO<sub>3</sub> (STO) crystal.
DOI: 10.17632/2fp47vg2w9
title: Instrumented open-source filament extruder for research and education

description: Extruders are necessary equipment for 3D filament manufacturing, which is considered a clean technology, because it has less scrap and can reuse materials, increasing its life cycle. Open-source extruders are less expensive than industrial extruders. However, they have little instrumentation, which limits the analysis of the processing and, consequently, the development of new materials, screw design and process control. Therefore, this project aims to develop a low-cost extruder with a high degree of instrumentation. To achieve this, equipment with a circuit board was developed, with modularity, machine and peripherals control, process stability, and data acquisition. To validate the equipment, the processing was done at constant temperature and with flow variation. The data obtained were temperatures in different points of the barrel, the rotation speed of the extruder motor, current consumed by the motor and by the resistances, and the speed of the puller motor. Thermal images of the components were taken during processing, validating the type of material used in the parts manufactured by additive manufacturing. The ABS filament produced was analyzed by flow and surface analysis using a confocal microscope.
DOI: 10.17632/f8ccrkdt56
title: Simulation of n-qubit quantum systems. IV. Parametrizations of quantum states, matrices and probability distributions

description: Abstract Entanglement is known today as a key resource in many protocols from quantum computation and quantum information theory. However, despite the successful demonstration of several protocols, such as teleportation or quantum key distribution, there are still many open questions of how entanglement affects the efficiency of quantum algorithms or how it can be protected against noisy environments. The investigation of these and related questions often requires a search or optimization over the set... Title of program: FEYNMAN Catalogue Id: ADWE_v4_0 Nature of problem During the last decades, quantum information science has contributed to our understanding of quantum mechanics and has provided also new and efficient protocols, based on the use of entangled quantum states. To determine the behaviour and entanglement of n-qubit quantum registers, symbolic and numerical simulations need to be applied in order to analyze how these quantum information protocols work and which role the entanglement plays hereby. Versions of this program held in the CPC repository in Mendeley Data ADWE_v1_0; FEYNMAN; 10.1016/j.cpc.2005.07.006 ADWE_v2_0; FEYNMAN; 10.1016/j.cpc.2006.03.006 ADWE_v3_0; FEYNMAN; 10.1016/j.cpc.2007.02.106 ADWE_v4_0; FEYNMAN; 10.1016/j.cpc.2008.06.007 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/r5d8x5zgnw
title: The list of Russian Journals from Scopus Master List (August 2019)

description: The data about the Russian Journals from Scopus. The data was prepared for article: Прогноз развития российских научных журналов: индексация в международных указателях цитирования // Scholarly Research and Information [https://www.neiconjournal.com/jour]
DOI: 10.6084/m9.figshare.13725546.v1
title: A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images

description: Real-time magnetic resonance imaging (RT-MRI) of human speech production is enabling significant advances in speech science, linguistics, bio-inspired speech technology development, and clinical applications. Easy access to RT-MRI is however limited, and comprehensive datasets with broad access are needed to catalyze research across numerous domains. The imaging of the rapidly moving articulators and dynamic airway shaping during speech demands high spatio-temporal resolution and robust reconstruction methods. Further, while reconstructed images have been published, to-date there is no open dataset providing raw multi-coil RT-MRI data from an optimized speech production experimental setup. Such datasets could enable new and improved methods for dynamic image reconstruction, artifact correction, feature extraction, and direct extraction of linguistically-relevant biomarkers.<br>The present dataset offers a unique corpus of 2D sagittal-view RT-MRI videos along with synchronized audio for 75 subjects performing linguistically motivated speech tasks, alongside the corresponding first-ever public domain raw RT-MRI data. The dataset also includes 3D volumetric vocal tract MRI during sustained speech sounds and high-resolution static anatomical T2-weighted upper airway MRI for each subject.<br><br>Included are the following files:<i>dataset.zip</i>: contains the entire dataset of 75 subjects<i>dataset_2drt_video_only.zip</i>: contains only files of 2D RT-MRI videos of 75 subjects<i>dataset_t2w_only.zip</i>: contains only files of T2-weighted images of 75 subjects<i>dataset_3d_only.zip</i>: contains only files of 3D volumetric images of 75 subjects <br><i>example_for_sub001.zip</i>: contains all files of 1 subject (sub001)<br><i>metafile_public_20210129.json</i>: contains meta information<i>Subjects.xlsx</i>: contains demographic information for each subject<i>Stimuli.pptx</i>: contains the experimental stimuli including scripts and pictures used for the visualization to the subjects<br>
DOI: 10.17632/btmrycjpbj
title: Thermal Image dataset for object classification

description: The thermal image dataset for object classification is comprised of total 6414 images were captured by using Seek Thermal and a total of 1014 images are captured by using FLIR. The resolution of the images captured by the FLIR camera is 1080 X 1440 and for Seek Thermal is 300 x 400. There are three classes cat, car and man. The resolution of the images is higher in comparison with the handheld thermal cameras. The texture of the object is not clear but the temperature of the object is distinguishable, edges and contours are also clear. A thermal image dataset for object classification is used for the training and testing of deep learning models.
DOI: 10.6084/m9.figshare.13487541.v1
title: Hydrodynamic crystals 2D Faraday waves

description: Moulding hydrodynamic 2D crystals upon parametric Faraday waves in shear functionalized water surfaces (2020 submission)
DOI: 10.6084/m9.figshare.21639919.v1
title: Sports, Leisure and Economic Development in Ilhéus (c. 1890-1930)

description: ABSTRACT The article analyzes the early sport’s history in Ilhéus, as well as the circumstances that may explain how this process took place. The case of Ilhéus shows the development of these practices in a context where the urbanization was still incipient. Most of the population of the city at that time resided in rural areas and was involved in agricultural work. Such circumstances, however, did not prevent the flourishing of sports and other leisure practices. On the contrary, it was an economic development almost entirely supported by agricultural activities that created the conditions for the emergence of sports in Ilhéus. However, the nature of the modernization allowed by the agricultural economy was also the main obstacle to sustaining and expanding the scope of this process.
DOI: 10.6084/m9.figshare.5674858.v1
title: Human PPI from IntAct database (IAH)

description: The datasets contains information about protein-protein interactions (PPI) and protein-protein complex interactions (PCI) in human. It was received by querying the IntAct database based on the criteria that the organism is human and the confidence level of the interaction is based on MI score ≥ 0.45 The confidence level of each interaction is characterised by IntAct MI score. The result was downloaded from IntAct molecular interaction database version 4.2.6 https://www.ebi.ac.uk/intact/.<br>
DOI: 10.17632/t4wtnh4zpg
title: War-related continuous traumatic stress as a potential mediator of associations between moral distress and professional quality of life in nurses: a cross-sectional study in Ukraine

description: The study aims to contribute to our understanding of the potential mediating effect of war-related continuous traumatic stress on the association between moral distress and professional quality of life, including compassion satisfaction, compassion fatigue, represented by burnout and secondary traumatic stress.
DOI: 10.17632/tnwry8k5dv
title: Data for: Calcium chloride addition to overcome the barriers for synthesizing new Ca-Ti layered double hydroxide by mechanochemistry

description: the file includes all the original data for the publication of Ca-Ti LDH synthesis.
DOI: 10.17632/zd86wmkmb4
title: Underrepresentation of Skin of Color in Dermatology Grand Rounds Cases: A Single-Center Retrospective Study

description: Supplementary Table 1. Fitzpatrick types of patients presented at University of Pennsylvania Department of
Dermatology Grand Rounds, 2015-2019

Supplementary Table 2: Fitzpatrick types of images per diagnostic category
DOI: 10.6084/m9.figshare.154688.v7
title: Gas hydrate deposits: a primer

description: This graphic is a draft from an educational course I'm compiling about the Earth's natural gas reserves. It attempts to summarise what gas hydrates are and where they can be found, adn accompanies further graphics that explain the chemistry of hydrates. No attempt is made to quantify the amount of methane that might be present in these deposits globally - this is the subject of much uncertainty. Those interested in the details of resource size can refer to the sources listed in the graphic and GEA (2012). <em>Global Energy Assessment - Toward a Sustainable Future</em>. Cambridge University Press. I hope some will find this useful. Any comments, corrections and queries welcome.