cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11759688.v1
title: Additional file 2 of Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

description: Additional file 2. Differentially expressed genes for the main effect of diet.
DOI: 10.6084/m9.figshare.11759679
title: Additional file 12 of Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

description: Additional file 12. Sample information and RNA quality.
DOI: 10.6084/m9.figshare.11759676
title: Additional file 5 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 5: Gene-microbe and microbe-microbe correlation. (XLSX 140 kb).
DOI: 10.6084/m9.figshare.11759676.v1
title: Additional file 5 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 5: Gene-microbe and microbe-microbe correlation. (XLSX 140 kb).
DOI: 10.6084/m9.figshare.11759679.v1
title: Additional file 12 of Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

description: Additional file 12. Sample information and RNA quality.
DOI: 10.6084/m9.figshare.11759667
title: Additional file 4 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 4: Differentially abundant taxa. (XLSX 41 kb).
DOI: 10.6084/m9.figshare.11759670
title: Additional file 11 of Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

description: Additional file 11. Husbandry and sample preparation batches.
DOI: 10.6084/m9.figshare.11759670.v1
title: Additional file 11 of Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

description: Additional file 11. Husbandry and sample preparation batches.
DOI: 10.6084/m9.figshare.11759667.v1
title: Additional file 4 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 4: Differentially abundant taxa. (XLSX 41 kb).
DOI: 10.21227/wckp-1g84
title: OCTA-500

description: Optical coherence tomography angiography (OCTA) is a novel imaging modality that allows a micron-level resolution to present the three-dimensional structure of the retinal vascular.We propose a new multi-modality dataset, dubbed OCTA-500. It contains 500 subjects with two field of view (FOV) types, including OCT and OCTA volumes, six types of projections, four types of text labels and two types of pixel-level labels. The dataset contains more than 360K images with a size of about 80GB. We will upload the encrypted dataset first, and the password will be released later in this article.
DOI: 10.6084/m9.figshare.11759655
title: Additional file 3 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 3: Differentially expressed genes. (XLSX 132 kb).
DOI: 10.6084/m9.figshare.11759655.v1
title: Additional file 3 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 3: Differentially expressed genes. (XLSX 132 kb).
DOI: 10.6084/m9.figshare.11759640
title: Additional file 1 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 1: Metadata for RNA-Seq and 16S rRNA data. (XLSX 13 kb).
DOI: 10.6084/m9.figshare.11759640.v1
title: Additional file 1 of Interactions between the gut microbiome and host gene regulation in cystic fibrosis

description: Additional file 1: Metadata for RNA-Seq and 16S rRNA data. (XLSX 13 kb).
DOI: 10.6084/m9.figshare.11759634
title: Additional file 5 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 5.. List of animals present in the Tehuacan-Cuicatlan area and surrounding regions, but with use reports in other regions of Mesoamerica. Tabular data with taxonomic information of animals to species level and references. Each line is a species and at least one reference of its presence within the study area in the TCV, and one reference of its use in other regions of Mesoamerica.
DOI: 10.6084/m9.figshare.11759631
title: Additional file 4 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 4.. Records of used and managed species in the Tehuacan-Cuicatlan area and surrounding regions. Tabular data with taxonomic information of animals to species level indicating use and management categories and references.
DOI: 10.6084/m9.figshare.11759634.v1
title: Additional file 5 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 5.. List of animals present in the Tehuacan-Cuicatlan area and surrounding regions, but with use reports in other regions of Mesoamerica. Tabular data with taxonomic information of animals to species level and references. Each line is a species and at least one reference of its presence within the study area in the TCV, and one reference of its use in other regions of Mesoamerica.
DOI: 10.6084/m9.figshare.11759628
title: Additional file 9 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 9: Table S4. Gene ontology (GO) enrichment analysis of 399 DEGs.
DOI: 10.6084/m9.figshare.11759628.v1
title: Additional file 9 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 9: Table S4. Gene ontology (GO) enrichment analysis of 399 DEGs.
DOI: 10.6084/m9.figshare.11759631.v1
title: Additional file 4 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 4.. Records of used and managed species in the Tehuacan-Cuicatlan area and surrounding regions. Tabular data with taxonomic information of animals to species level indicating use and management categories and references.
DOI: 10.6084/m9.figshare.11759625
title: Additional file 3 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 3.. Synthesis of the list of used and managed species in the Tehuacan-Cuicatlan area and surrounding regions used for the analyses. Tabular data with taxonomic information of animals to species level, indicating use and management categories within TCV and its references. Information for each species is summarized in a single line.
DOI: 10.6084/m9.figshare.11759625.v1
title: Additional file 3 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 3.. Synthesis of the list of used and managed species in the Tehuacan-Cuicatlan area and surrounding regions used for the analyses. Tabular data with taxonomic information of animals to species level, indicating use and management categories within TCV and its references. Information for each species is summarized in a single line.
DOI: 10.6084/m9.figshare.11759613
title: Additional file 1 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 1.. VTC localities. Checklist of the localities within the study area.
DOI: 10.6084/m9.figshare.11759613.v1
title: Additional file 1 of Use and management of wild fauna by people of the Tehuacán-Cuicatlán Valley and surrounding areas, Mexico

description: Additional file 1.. VTC localities. Checklist of the localities within the study area.
DOI: 10.6084/m9.figshare.11759601
title: Information of the genome assembly of 139 strains

description: 总共<b> </b>分析了260 <i>株V. vulnificus</i>基因组，包括该研究中新测序的139条基因和公开发表的121个<i> </i>基因组。
DOI: 10.6084/m9.figshare.11759601.v1
title: Information of the genome assembly of 139 strains

description: 总共<b> </b>分析了260 <i>株V. vulnificus</i>基因组，包括该研究中新测序的139条基因和公开发表的121个<i> </i>基因组。
DOI: 10.6084/m9.figshare.11759589
title: Additional file 3 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 3: Table S3. 40 overlapping candidate genes.
DOI: 10.6084/m9.figshare.11759586
title: Additional file 2 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 2: Table S2. Differentially expressed genes (DEGs) with an adjusted p-value 4.
DOI: 10.6084/m9.figshare.11759589.v1
title: Additional file 3 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 3: Table S3. 40 overlapping candidate genes.
DOI: 10.6084/m9.figshare.11759586.v1
title: Additional file 2 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 2: Table S2. Differentially expressed genes (DEGs) with an adjusted p-value 4.
DOI: 10.6073/pasta/803abbcd7fb33bbfa9eff08521a397e8
title: SBC LTER: Kelp Removal Experiment: Hourly photon irradiance at the surface and seafloor

description: These data represent mean hourly values of photosynthetically active radiation (PAR) (in units of mol m-2 s-1) at the sea surface and the sea floor at SBC LTER kelp removal experiment sites. Sensors record instantaneous irradiance at one-minute intervals, and data are averaged hourly. Sensors are mounted on the sea floor at five sites (Arroyo Quemado, Carpinteria, Naples Reef, Isla Vista, and Mohawk Reef). A surface sensor is deployed on an unobstructed coastal rooftop at the UC Santa Barbara campus; some historical observations are available from sensors mounted above the sea surface at a subset of the five sites.
DOI: 10.6084/m9.figshare.11759577
title: Additional file 1 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 1: Table S1. Clinical information of TCGA KIRC cohort and GSE39609 cohort.
DOI: 10.6084/m9.figshare.11759577.v1
title: Additional file 1 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 1: Table S1. Clinical information of TCGA KIRC cohort and GSE39609 cohort.
DOI: 10.6084/m9.figshare.11759568
title: Additional file 11 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 11: Table S5. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis of 399 DEGs.
DOI: 10.6084/m9.figshare.11759568.v1
title: Additional file 11 of Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinoma

description: Additional file 11: Table S5. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis of 399 DEGs.
DOI: 10.6084/m9.figshare.11759472
title: Additional file 9 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 9. Significantly associated epistatic (SNP-SNP) interactions for iron deficiency chlorosis.
DOI: 10.6084/m9.figshare.11759472.v1
title: Additional file 9 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 9. Significantly associated epistatic (SNP-SNP) interactions for iron deficiency chlorosis.
DOI: 10.6084/m9.figshare.11759463
title: Additional file 8 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 8. Characterization of candidate genes in the historical IDC QTL on soybean Gm03.
DOI: 10.6084/m9.figshare.11759463.v1
title: Additional file 8 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 8. Characterization of candidate genes in the historical IDC QTL on soybean Gm03.
DOI: 10.6084/m9.figshare.11759454
title: Additional file 7 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 7. Characterization of candidate genes in GWAS QTL.
DOI: 10.6084/m9.figshare.11759454.v1
title: Additional file 7 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 7. Characterization of candidate genes in GWAS QTL.
DOI: 10.6084/m9.figshare.11759448
title: Additional file 6 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 6. Statistics of the peak SNPs of the QTL associated with soybean IDC tolerance across environments.
DOI: 10.6084/m9.figshare.11759448.v1
title: Additional file 6 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 6. Statistics of the peak SNPs of the QTL associated with soybean IDC tolerance across environments.
DOI: 10.6084/m9.figshare.11759442
title: Additional file 5 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 5. Identification of genomic regions containing SNPs significantly associated with IDC.
DOI: 10.6084/m9.figshare.11759442.v1
title: Additional file 5 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 5. Identification of genomic regions containing SNPs significantly associated with IDC.
DOI: 10.6084/m9.figshare.11759439
title: Additional file 7 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 7: Table S5. Accuracy measures of benchmarks with QuantTB, StrainSeeker, and Sigma for all experiments in this study.
DOI: 10.6084/m9.figshare.11759439.v1
title: Additional file 7 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 7: Table S5. Accuracy measures of benchmarks with QuantTB, StrainSeeker, and Sigma for all experiments in this study.
DOI: 10.6084/m9.figshare.11759433
title: Additional file 1 of Cost-Constrained feature selection in binary classification: adaptations for greedy forward selection and genetic algorithms

description: Additional file 1 Run-time overview table. Median run-time in seconds for the execution of one feature selection run. All results of methods and Settings analyzed in the simulations of this paper are given rounded to two digits.
DOI: 10.6084/m9.figshare.11759430
title: Additional file 4 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 4. Soybean Plant Introduction (PI) names, maturity group, and IDC scores for lines utilized in GWAS and GWES analyses.
DOI: 10.6084/m9.figshare.11759430.v1
title: Additional file 4 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 4. Soybean Plant Introduction (PI) names, maturity group, and IDC scores for lines utilized in GWAS and GWES analyses.
DOI: 10.6084/m9.figshare.11759424
title: Additional file 6 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 6: Table S4. Number of genomes in each lineage for each database. Lineage specification method can be found in the methods section.
DOI: 10.6084/m9.figshare.11759424.v1
title: Additional file 6 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 6: Table S4. Number of genomes in each lineage for each database. Lineage specification method can be found in the methods section.
DOI: 10.6084/m9.figshare.11759418
title: Additional file 5 of QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 5: Table S3. List of antibiotic resistant causing mutations used in QuantTB. The base is the genomic location, ref. is the H37Rv reference allele at that position, mutation is the corresponding resistant causing mutation, and the drug initial is indicated in the ‘drug’ column. The initial dictionary is as follows: {O: Ofloxacin, R: Rifampicin, S: Streptomycin, K: kanamycin, T: common to isoniazid and ethionamide, I: Isoniazid, P: Pyrazinamide, K: Kanamycin, E: Ethambutol, M: Ethionamide}.
DOI: 10.6084/m9.figshare.11759415
title: Additional file 4 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 4: Table S2. List of excluded PE/PPE/PGRS gene loci.
DOI: 10.6084/m9.figshare.11759418.v1
title: Additional file 5 of QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 5: Table S3. List of antibiotic resistant causing mutations used in QuantTB. The base is the genomic location, ref. is the H37Rv reference allele at that position, mutation is the corresponding resistant causing mutation, and the drug initial is indicated in the ‘drug’ column. The initial dictionary is as follows: {O: Ofloxacin, R: Rifampicin, S: Streptomycin, K: kanamycin, T: common to isoniazid and ethionamide, I: Isoniazid, P: Pyrazinamide, K: Kanamycin, E: Ethambutol, M: Ethionamide}.
DOI: 10.6084/m9.figshare.11759415.v1
title: Additional file 4 of QuantTB â€“ a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 4: Table S2. List of excluded PE/PPE/PGRS gene loci.
DOI: 10.6084/m9.figshare.11759409
title: Additional file 3 of QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 3: Table S1. List of NCBI accession numbers, and their strain name for the downloaded assemblies. Determination of the lineage is explained in the methods section. Whether or not it passed QC filtering is indicated in the ‘passed’ column.
DOI: 10.6084/m9.figshare.11759409.v1
title: Additional file 3 of QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

description: Additional file 3: Table S1. List of NCBI accession numbers, and their strain name for the downloaded assemblies. Determination of the lineage is explained in the methods section. Whether or not it passed QC filtering is indicated in the ‘passed’ column.
DOI: 10.6084/m9.figshare.11759397
title: Additional file 12 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 12. Bayesian Information Criterion values of mixed linear model with principal components (PCs) applied for association analysis of iron deficiency chlorosis in soybean population.
DOI: 10.6084/m9.figshare.11759397.v1
title: Additional file 12 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 12. Bayesian Information Criterion values of mixed linear model with principal components (PCs) applied for association analysis of iron deficiency chlorosis in soybean population.
DOI: 10.6084/m9.figshare.11759388
title: Additional file 11 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 11. Characterization of candidate genes in GWES regions.
DOI: 10.6084/m9.figshare.11759388.v1
title: Additional file 11 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 11. Characterization of candidate genes in GWES regions.
DOI: 10.6084/m9.figshare.11759382
title: Additional file 10 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 10. Identification of genomic regions containing epistatic SNPs (GWES) associated with IDC.
DOI: 10.6084/m9.figshare.11759382.v1
title: Additional file 10 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches

description: Additional file 10. Identification of genomic regions containing epistatic SNPs (GWES) associated with IDC.
DOI: 10.6084/m9.figshare.11759292
title: Additional file 12 of Coexpression and Transcriptome analyses identify active Apomixis-related genes in Paspalum notatum leaves

description: Additional file 12: Table S4. Functional classification of the 89 differentially expressed and/or specific putative apomixis-controlling region (ACR) transcripts.
DOI: 10.6084/m9.figshare.11759292.v1
title: Additional file 12 of Coexpression and Transcriptome analyses identify active Apomixis-related genes in Paspalum notatum leaves

description: Additional file 12: Table S4. Functional classification of the 89 differentially expressed and/or specific putative apomixis-controlling region (ACR) transcripts.
DOI: 10.6084/m9.figshare.11759256
title: Additional file 3 of Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

description: Additional file 3 Table S2. Collection of variants used to compare the branch point predictions (n = 120)
DOI: 10.6084/m9.figshare.11759256.v1
title: Additional file 3 of Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

description: Additional file 3 Table S2. Collection of variants used to compare the branch point predictions (n = 120)
DOI: 10.6084/m9.figshare.11759250
title: Additional file 2 of Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

description: Additional file 2 Table S1. Collection of alternative acceptor splice site (3’ss) and controls 3’ss (n = 103,972), from RNA-seq data
DOI: 10.6084/m9.figshare.11759250.v1
title: Additional file 2 of Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

description: Additional file 2 Table S1. Collection of alternative acceptor splice site (3’ss) and controls 3’ss (n = 103,972), from RNA-seq data
DOI: 10.6084/m9.figshare.11759145
title: Additional file 5 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S2. Annotation of CYP genes identified in round goby.
DOI: 10.6084/m9.figshare.11759145.v1
title: Additional file 5 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S2. Annotation of CYP genes identified in round goby.
DOI: 10.6084/m9.figshare.11759133
title: Additional file 33 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Alignments of dnmt1, dnmt3, eed, ezh, rbbp4, and suz12.
DOI: 10.6084/m9.figshare.11759136
title: Additional file 34 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Detailed methods for repeat annotation.
DOI: 10.6084/m9.figshare.11759136.v1
title: Additional file 34 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Detailed methods for repeat annotation.