cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18039106
title: Daily meteorological and environmental measurements from Mojave Desert shrubland at the Gemini Solar Project

description: This dataset contains daily meteorological and environmental measurements from Mojave Desert shrubland at the Gemini Solar Project. Data were collected inside the facility between panel array interspaces and in undisturbed desert areas outside the facility.Measurements inside the facility in panel array interspaces are represented by IF.Measurements outside the facility in undisturbed desert are represented by OF.Measurements IF and OF were replicated in a shallow soil location and a deep soil location.The complete description of the data can be found in a publication in Journal of Environmental Management entitled "Ecovoltaic solar energy development effects to microclimate, temperature, and soil moisture in panel array interspaces in a warm desert" by Pinos et al. (2026).

Temporal scale: DailyPeriod: June 2023 - February 2025

Variables description and units

Rs: Solar radiation (W m−2) at 1.0 m height VPD: Vapor pressure deficit (kPa)u: Wind speed (m s−1) at 1.0 m height ETo: Reference evapotranspiration (mm d−1)Ta: Air temperature (°C) at 0.5 m height Tss: Soil surface temperature (°C)Ts: Soil temperature (°C) at 0-15 cm depthVWC: Volumetric water content 10 cm, 20 cm, 40 cm (%)
DOI: 10.5281/zenodo.18039107
title: Daily meteorological and environmental measurements from Mojave Desert shrubland at the Gemini Solar Project

description: This dataset contains daily meteorological and environmental measurements from Mojave Desert shrubland at the Gemini Solar Project. Data were collected inside the facility between panel array interspaces and in undisturbed desert areas outside the facility.Measurements inside the facility in panel array interspaces are represented by IF.Measurements outside the facility in undisturbed desert are represented by OF.Measurements IF and OF were replicated in a shallow soil location and a deep soil location.The complete description of the data can be found in a publication in Journal of Environmental Management entitled "Ecovoltaic solar energy development effects to microclimate, temperature, and soil moisture in panel array interspaces in a warm desert" by Pinos et al. (2026).

Temporal scale: DailyPeriod: June 2023 - February 2025

Variables description and units

Rs: Solar radiation (W m−2) at 1.0 m height VPD: Vapor pressure deficit (kPa)u: Wind speed (m s−1) at 1.0 m height ETo: Reference evapotranspiration (mm d−1)Ta: Air temperature (°C) at 0.5 m height Tss: Soil surface temperature (°C)Ts: Soil temperature (°C) at 0-15 cm depthVWC: Volumetric water content 10 cm, 20 cm, 40 cm (%)
DOI: 10.14461/oncat.data/3010152
title: Time-Resolved Neutron Imaging for Hydrogen Uptake in Subsurface Lithologies

description: Contains the neutron radiography and tomography images of hydrogen uptake in different geological lithologies.
DOI: 10.5281/zenodo.18026751
title: Andrena simplex	NCSU_0011520
DOI: 10.5281/zenodo.18026752
title: Andrena simplex	NCSU_0011520
DOI: 10.5281/zenodo.18026882
title: Hylaeus modestus	NCSU_0012550
DOI: 10.5281/zenodo.18026883
title: Hylaeus modestus	NCSU_0012550
DOI: 10.15468/dl.prgam3
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa marmorea"
 ]
}

 The dataset includes 129 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064234-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18039194
title: Development of Soft Skills Among IT Students Through Project-Based Work Using the Kanban Methodology
DOI: 10.5281/zenodo.18039193
title: Development of Soft Skills Among IT Students Through Project-Based Work Using the Kanban Methodology
DOI: 10.15468/dl.a7bamk
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ONCFS Réseau Ours brun - Réseau Ours brun : Répartition Régulière de l'Ours 2021 (Mailles 10km LAEA)"
 ]
}

 The dataset includes 42 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064235-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14273032
title: Market Prices of Commodities in South Tangerang
DOI: 10.15468/ry3gbv
title: Fungal Inventarisation Urwitałt - KBMikro 2024/2025 Project

description: The dataset consists of fungal specimens collected in the Mazurian Landscape Park (Poland) in October 2025. For most of the specimens ITS barcode was sequenced. Sampling, morphological and molecular identification and data preparation were performed by members of the Students Club of Biology of Microorganisms.
DOI: 10.5281/zenodo.16883926
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 3 of data set (HTT-HAP40 and HHL1)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.16883927
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 3 of data set (HTT-HAP40 and HHL1)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.15468/dl.r5hhps
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa medemi"
 ]
}

 The dataset includes 64 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064236-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16883965
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 5 of data set (HTT and HL5)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.16883966
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 5 of data set (HTT and HL5)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.6084/m9.figshare.30299968
title: Impact of genetic variability on NADPH oxidase activity: an extensive genotype-phenotype assessment

description: <b>Introduction:</b> Oxidative stress is implicated in various diseases, and the NADPH oxidase enzyme complex (NOX) is a significant source of reactive oxygen species (ROS). Research linking genetic polymorphisms to enzyme activity has produced conflicting results. <b>Methods:</b> We aimed to establish a robust protocol to assess NOX activity <i>in vitro</i> under highly standardized conditions and correlate these measurements with genetic polymorphisms catalogued by the 1000 Human Genome Project and the HapMap Project. Lymphoblastoid cell lines (LCLs) served as a model system with samples from healthy participants from three Caucasian populations. NOX activity stimulated by phorbol 12-myristate 13-acetate was measured using chemiluminescence in 290 LCLs (198 in a training and 92 in a test set) through a series of multiply repeated measurements per LCL comprising in total over 1,500 NOX activity assessments. The association between NOX activity and single nucleotide polymorphisms (SNPs) in the NOX subunit genes <i>CYBA</i>, <i>CYBB</i>, <i>NCF1</i>, <i>NCF2</i>, and <i>NCF4</i> was subsequently examined. <b>Results:</b> Out of 651 valid polymorphic markers, 308 had a minor allele frequency of ≥ 5%, and 15 SNPs showed a statistically significant correlation with NOX activity in the training set. However, these 15 associations were not confirmed in the test set (all <i>p</i> ≥ 0.1). Additional analyses treating all 290 LCLs as a single cohort yielded three associations at <i>p</i> &lt; 0.01, i.e. <i>CYBA</i> rs1017828, <i>NCF1</i> rs191081238, and <i>NCF4</i> rs4821544. However, statistical significance could not be called for any of these genetic markers upon adjustment for multiple testing, regardless whether a co-dominant, dominant or recessive allelic effect was assumed. <b>Conclusion:</b> Our results do not support a reproducible impact of common genetic diversity in NOX subunits on the enzyme activity in LCLs of subjects of Caucasian origin. This study represents the largest evaluation concerning relationships between NOX genetic variants and enzyme activity to date.
DOI: 10.6084/m9.figshare.30299968.v1
title: Impact of genetic variability on NADPH oxidase activity: an extensive genotype-phenotype assessment

description: <b>Introduction:</b> Oxidative stress is implicated in various diseases, and the NADPH oxidase enzyme complex (NOX) is a significant source of reactive oxygen species (ROS). Research linking genetic polymorphisms to enzyme activity has produced conflicting results. <b>Methods:</b> We aimed to establish a robust protocol to assess NOX activity <i>in vitro</i> under highly standardized conditions and correlate these measurements with genetic polymorphisms catalogued by the 1000 Human Genome Project and the HapMap Project. Lymphoblastoid cell lines (LCLs) served as a model system with samples from healthy participants from three Caucasian populations. NOX activity stimulated by phorbol 12-myristate 13-acetate was measured using chemiluminescence in 290 LCLs (198 in a training and 92 in a test set) through a series of multiply repeated measurements per LCL comprising in total over 1,500 NOX activity assessments. The association between NOX activity and single nucleotide polymorphisms (SNPs) in the NOX subunit genes <i>CYBA</i>, <i>CYBB</i>, <i>NCF1</i>, <i>NCF2</i>, and <i>NCF4</i> was subsequently examined. <b>Results:</b> Out of 651 valid polymorphic markers, 308 had a minor allele frequency of ≥ 5%, and 15 SNPs showed a statistically significant correlation with NOX activity in the training set. However, these 15 associations were not confirmed in the test set (all <i>p</i> ≥ 0.1). Additional analyses treating all 290 LCLs as a single cohort yielded three associations at <i>p</i> &lt; 0.01, i.e. <i>CYBA</i> rs1017828, <i>NCF1</i> rs191081238, and <i>NCF4</i> rs4821544. However, statistical significance could not be called for any of these genetic markers upon adjustment for multiple testing, regardless whether a co-dominant, dominant or recessive allelic effect was assumed. <b>Conclusion:</b> Our results do not support a reproducible impact of common genetic diversity in NOX subunits on the enzyme activity in LCLs of subjects of Caucasian origin. This study represents the largest evaluation concerning relationships between NOX genetic variants and enzyme activity to date.
DOI: 10.6084/m9.figshare.30942930
title: Unveil linear patterns of dependence via <i>K</i>-regression clustering

description: Clustering is a fundamental problem in many scientific applications. This paper introduces the concept of <i>K</i>-regression, which divides a random sample of size <i>n</i> into <i>K</i> clusters such that the observations within each cluster exhibit an identical linear pattern of dependence, and the observations in different clusters exhibit distinctive structures of linear dependence. We estimate the coefficients of the clustering regressions through minimizing the within cluster l1 and l2 loss functions. From the asymptotic perspective, the resulting estimates obtained with either the l1 or the l2 loss are strongly consistent and asymptotically normal. From the non-asymptotic perspective, we further explore the conditions under which the models are identifiable and the algorithms are convergent. Furthermore, we propose a tailored Bayesian Information Criterion (BIC) designed specifically for regression-based clustering. Through extensive simulations and an application to clinical trial subgroup analysis, we demonstrate the effectiveness of <i>K</i>-regression. Numerical results highlight that, in the presence of heterogeneity, l1 <i>K</i>-regression outperforms alternative methods (including l2 <i>K</i>-regression) in coefficient estimation, cluster number determination, and subgroup classification while maintaining computational efficiency. These advantages make l1 <i>K</i>-regression particularly appealing for large-scale data analysis, especially when heterogeneous subpopulations are present.
DOI: 10.6084/m9.figshare.30942930.v1
title: Unveil linear patterns of dependence via <i>K</i>-regression clustering

description: Clustering is a fundamental problem in many scientific applications. This paper introduces the concept of <i>K</i>-regression, which divides a random sample of size <i>n</i> into <i>K</i> clusters such that the observations within each cluster exhibit an identical linear pattern of dependence, and the observations in different clusters exhibit distinctive structures of linear dependence. We estimate the coefficients of the clustering regressions through minimizing the within cluster l1 and l2 loss functions. From the asymptotic perspective, the resulting estimates obtained with either the l1 or the l2 loss are strongly consistent and asymptotically normal. From the non-asymptotic perspective, we further explore the conditions under which the models are identifiable and the algorithms are convergent. Furthermore, we propose a tailored Bayesian Information Criterion (BIC) designed specifically for regression-based clustering. Through extensive simulations and an application to clinical trial subgroup analysis, we demonstrate the effectiveness of <i>K</i>-regression. Numerical results highlight that, in the presence of heterogeneity, l1 <i>K</i>-regression outperforms alternative methods (including l2 <i>K</i>-regression) in coefficient estimation, cluster number determination, and subgroup classification while maintaining computational efficiency. These advantages make l1 <i>K</i>-regression particularly appealing for large-scale data analysis, especially when heterogeneous subpopulations are present.
DOI: 10.5281/zenodo.16883963
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 4 of data set (HHD3)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.16883962
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 4 of data set (HHD3)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.17609567
title: MajinBook: An open catalogue of digital world literature with likes

description: Preprint: arxiv.org/abs/2511.11412

Data documentation: github.com/mazieres/MajinBook

Abstract

MajinBook is an open catalogue designed to facilitate the use of shadow libraries—such as Library Genesis and Z-Library—for computational social science and cultural analytics. By linking metadata from these vast, crowd-sourced archives with structured bibliographic data from Goodreads, we create a high-precision corpus of over 539,000 references to English-language books spanning three centuries, enriched with first publication dates, genres, and popularity metrics like ratings and reviews. Our methodology prioritizes natively digital EPUB files to ensure machine-readable quality, while addressing biases in traditional corpora like HathiTrust, and includes secondary datasets for French, German, and Spanish. We evaluate the linkage strategy for accuracy, release all underlying data openly, and discuss the project's legal permissibility under EU and US frameworks for text and data mining in research.
DOI: 10.5281/zenodo.17609566
title: MajinBook: An open catalogue of digital world literature with likes

description: Preprint: arxiv.org/abs/2511.11412

Data documentation: github.com/mazieres/MajinBook

Abstract

MajinBook is an open catalogue designed to facilitate the use of shadow libraries—such as Library Genesis and Z-Library—for computational social science and cultural analytics. By linking metadata from these vast, crowd-sourced archives with structured bibliographic data from Goodreads, we create a high-precision corpus of over 539,000 references to English-language books spanning three centuries, enriched with first publication dates, genres, and popularity metrics like ratings and reviews. Our methodology prioritizes natively digital EPUB files to ensure machine-readable quality, while addressing biases in traditional corpora like HathiTrust, and includes secondary datasets for French, German, and Spanish. We evaluate the linkage strategy for accuracy, release all underlying data openly, and discuss the project's legal permissibility under EU and US frameworks for text and data mining in research.
DOI: 10.5281/zenodo.17950194
title: FTIR Spectra of Control and Nigella sativa methanolic extract –treated Caco-2 Cells

description: This dataset contains Fourier Transform Infrared (FTIR) spectra obtained from Caco-2 cells under control conditions and after treatment with Nigella sativa extract.

The experiment was independently repeated three times, yielding three biological replicates for both the Nigella sativa–treated and control groups. For each biological replicate, three technical replicate spectra were collected from separate aliquots, resulting in a total of nine spectra per group.

Raw spectra are provided without post-processing unless otherwise stated.
DOI: 10.5281/zenodo.17950195
title: FTIR Spectra of Control and Nigella sativa methanolic extract –treated Caco-2 Cells

description: This dataset contains Fourier Transform Infrared (FTIR) spectra obtained from Caco-2 cells under control conditions and after treatment with Nigella sativa extract.

The experiment was independently repeated three times, yielding three biological replicates for both the Nigella sativa–treated and control groups. For each biological replicate, three technical replicate spectra were collected from separate aliquots, resulting in a total of nine spectra per group.

Raw spectra are provided without post-processing unless otherwise stated.
DOI: 10.5281/zenodo.18039277
title: alophia_drummondii_spades_01.fasta.gz
DOI: 10.5281/zenodo.18039276
title: alophia_drummondii_spades_01.fasta.gz