cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4921932
title: HOE_Legacy2A-KM1513-Diazotroph Abundance_2021-05-01_v1.0

description: This dataset comes from sampling performed during the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. At select stations and depths (ranging from 5 to 45m), the entire volume of a Niskin bottle was drained directly into clean ~10L carboys fitted with spigots. Carboys were covered in dark cloth and the volume was gravity filtered through a 47-mm diameter, 10 micron pore size, black polycarbonate filter with a polyester drain disk as a backing filter. If the volume was not filtered after 2 hours, filtration was terminated and the remaining volume of the carboy was measured in order to calculate volume filtered. Following filtration, filter holders were fit with a short section of tubing and a syringe leur fitting on one side and a 2-way valve on the outflow side. For each filter, 5-ml of 2% glutaraldehyde was slowly injected onto the filter and samples were allowed to fix for 30 minutes. Fixative was drained after this time and 60ml of air was used to flush all filters. Polycarbonate filters were then mounted onto 3x2” glass slides with immersion oil, cover slides were added and the edges of each cover slip was sealed with quick dry nail polish. All slides were stored at -20°C and counted within 30 days. Enumeration of diazotrophic taxa was performed using epifluorescence microscopy. Random areas were counted until a minimum of 1000 cells were enumerated, generally this amounted to roughly 20% of the slide area for DDAs. The entire slide was counted for Trichodesimum abundance. Endosymbiont bearing diatoms of the following genus were enumerated: Rhizosolenia, Hemialus, Climacodium and Chaetoceras. Free Richelia intracellularis were also counted. Trichodesmium filaments were counted and the length of each filament was recorded. Trichodesmium cell number was then calculated by dividing the filament length by the mean cell length (12 micron ±2 micron).
DOI: 10.5281/zenodo.4921931
title: HOE_Legacy2A-KM1513-Diazotroph Abundance_2021-05-01_v1.0

description: This dataset comes from sampling performed during the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. At select stations and depths (ranging from 5 to 45m), the entire volume of a Niskin bottle was drained directly into clean ~10L carboys fitted with spigots. Carboys were covered in dark cloth and the volume was gravity filtered through a 47-mm diameter, 10 micron pore size, black polycarbonate filter with a polyester drain disk as a backing filter. If the volume was not filtered after 2 hours, filtration was terminated and the remaining volume of the carboy was measured in order to calculate volume filtered. Following filtration, filter holders were fit with a short section of tubing and a syringe leur fitting on one side and a 2-way valve on the outflow side. For each filter, 5-ml of 2% glutaraldehyde was slowly injected onto the filter and samples were allowed to fix for 30 minutes. Fixative was drained after this time and 60ml of air was used to flush all filters. Polycarbonate filters were then mounted onto 3x2” glass slides with immersion oil, cover slides were added and the edges of each cover slip was sealed with quick dry nail polish. All slides were stored at -20°C and counted within 30 days. Enumeration of diazotrophic taxa was performed using epifluorescence microscopy. Random areas were counted until a minimum of 1000 cells were enumerated, generally this amounted to roughly 20% of the slide area for DDAs. The entire slide was counted for Trichodesimum abundance. Endosymbiont bearing diatoms of the following genus were enumerated: Rhizosolenia, Hemialus, Climacodium and Chaetoceras. Free Richelia intracellularis were also counted. Trichodesmium filaments were counted and the length of each filament was recorded. Trichodesmium cell number was then calculated by dividing the filament length by the mean cell length (12 micron ±2 micron).
DOI: 10.5281/zenodo.4918330
title: Dataset from: Before and After: A Multiscale Remote Sensing Assessment of the Sinop Dam, Mato Grosso, Brazil

description: Datasets comprising: 1) Land cover classification (ESRI shapefile) for the year 2014 for the area inundated by the Sinop hydropower plant. This classification was generated from Rapideye imagery. 2) Virtual reality viewer compatible file (.ply format) of the Ilha do Lair study area in the Teles Pires river. This 3D point cloud was generated from UAS photographs and a Structure-from-Motion Multiview Stereo workflow. It represents an area of interest for ichthyological diversity prior to the operationalization of the Sinop hydropower plant.
DOI: 10.5281/zenodo.4918329
title: Dataset from: Before and After: A Multiscale Remote Sensing Assessment of the Sinop Dam, Mato Grosso, Brazil

description: Datasets comprising: 1) Land cover classification (ESRI shapefile) for the year 2014 for the area inundated by the Sinop hydropower plant. This classification was generated from Rapideye imagery. 2) Virtual reality viewer compatible file (.ply format) of the Ilha do Lair study area in the Teles Pires river. This 3D point cloud was generated from UAS photographs and a Structure-from-Motion Multiview Stereo workflow. It represents an area of interest for ichthyological diversity prior to the operationalization of the Sinop hydropower plant.
DOI: 10.6084/m9.figshare.14759037
title: Dataset - Casal et al.xlsx

description: This is a dataset for reasearch by Casal et al.
DOI: 10.3886/e113633v1-88621
title: Replication data for: Star Wars: The Empirics Strike Back

description: Using 50,000 tests published in the AER, JPE, and QJE, we identify a residual in the distribution of tests that cannot be explained solely by journals favoring rejection of the null hypothesis. We observe a two-humped camel shape with missing p-values between 0.25 and 0.10 that can be retrieved just after the 0.05 threshold and represent 10-20 percent of marginally rejected tests. Our interpretation is that researchers inflate the value of just-rejected tests by choosing "significant" specifications. We propose a method to measure this residual and describe how it varies by article and author characteristics. (JEL A11, C13)
DOI: 10.5281/zenodo.4921986
title: HOE_Legacy2A-KM1513-MicroZooplanktonAbundance_2021-05-01_v1.0

description: This dataset comes from sampling performed during the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. At select stations and depths (ranging from 5 to 45m), using a graduated cylinder a 1L volume was transferred into a clean 2L amber bottle. Samples were then fixed using a mixture of 5% Acid Lugol’s and 37% formaldehyde (to toughen cell walls) and allowed to fix overnight. Following the fixation period the total volume was gravity filtered through a 25-mm diameter, 8 micron pore size, black polycarbonate filter with a polyester drain disk as a backing filter. Following filtration polycarbonate filters were mounted onto 25x75mm glass slides with immersion oil, cover slides were added and all edges of the cover slip were sealed with quick dry nail polish. All slides were stored at -20°C and counted within 30 days. The slide was brought to room temperature and counted using a Nikon Diaphot 200 inverted microscope equipped with a drawing tube and cell measuring capabilities via Pax Microbiota software. Abundance, biomass, and general community and size composition of the heterotrophic community larger than 15 microns was determined.
DOI: 10.5281/zenodo.4921985
title: HOE_Legacy2A-KM1513-MicroZooplanktonAbundance_2021-05-01_v1.0

description: This dataset comes from sampling performed during the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. At select stations and depths (ranging from 5 to 45m), using a graduated cylinder a 1L volume was transferred into a clean 2L amber bottle. Samples were then fixed using a mixture of 5% Acid Lugol’s and 37% formaldehyde (to toughen cell walls) and allowed to fix overnight. Following the fixation period the total volume was gravity filtered through a 25-mm diameter, 8 micron pore size, black polycarbonate filter with a polyester drain disk as a backing filter. Following filtration polycarbonate filters were mounted onto 25x75mm glass slides with immersion oil, cover slides were added and all edges of the cover slip were sealed with quick dry nail polish. All slides were stored at -20°C and counted within 30 days. The slide was brought to room temperature and counted using a Nikon Diaphot 200 inverted microscope equipped with a drawing tube and cell measuring capabilities via Pax Microbiota software. Abundance, biomass, and general community and size composition of the heterotrophic community larger than 15 microns was determined.
DOI: 10.5281/zenodo.4921943
title: HOE_Legacy2A-KM1513-Hyperpro-Profiles_2021-05-01_v1.0

description: The Satlantic (now Seabird) HyperPro is an in-situ free-fall profiling unit designed to measure the apparent optical properties of the ocean with concurrent measurements of temperature, salinity, chlorophyll and dissolved matter fluorescence, and optical backscattering (a proxy for total particle load). The unit is equipped with one up-looking and one down-looking hyperspectral (350-800nm) radiometer with 10 ± 0.3 nm resolution, a WET Labs ECO-Puck Triplet, and temperature, pressure, and conductivity sensors. It also incorporates a ship-mounted surface (air) hyperspectral radiometer. These data are collated from the vertical profiles conducted during the HOE Legacy 2A cruise in the north Pacific Ocean.
DOI: 10.5281/zenodo.4921942
title: HOE_Legacy2A-KM1513-Hyperpro-Profiles_2021-05-01_v1.0

description: The Satlantic (now Seabird) HyperPro is an in-situ free-fall profiling unit designed to measure the apparent optical properties of the ocean with concurrent measurements of temperature, salinity, chlorophyll and dissolved matter fluorescence, and optical backscattering (a proxy for total particle load). The unit is equipped with one up-looking and one down-looking hyperspectral (350-800nm) radiometer with 10 ± 0.3 nm resolution, a WET Labs ECO-Puck Triplet, and temperature, pressure, and conductivity sensors. It also incorporates a ship-mounted surface (air) hyperspectral radiometer. These data are collated from the vertical profiles conducted during the HOE Legacy 2A cruise in the north Pacific Ocean.
DOI: 10.5281/zenodo.4922028
title: HOE_Legacy2A-KM1513-PCPN-UW_2020-05-01_v1.0

description: For the Hawaii Ocean Experiment (HOE) Legacy 2A cruise aboard the Kilo Moana in the north Pacific Ocean, the carbon and nitrogen content of particulate material (PC, PN) was collected by semi-automated and sequential filtration of the ship’s underway flow through seawater onto a combusted GFF filter. Following filtration, filters were folded in half and placed in combusted aluminum foil and stored at -80°C for later analysis. Post-cruise, all filters were thawed and dried overnight at 60°C. Samples were then balled into Ag and Sn boats and plated for analysis. Organic carbon and total nitrogen content was analyzed using high-temperature combustion (1020 C) on a ThermoQuest NC 2500 elemental analyzer. Three standards with known %C and %N were weighed, folded in tin boats, and analyzed with the samples to develop the calibration equation for each run. The calibration equation was then used to calculate the mass (mg) of carbon and nitrogen in each sample using EAS Clarity Chromatography Station software. The standards are Cystine (Elemental Microanalysis, B2035, 11.66 %TN, 29.99 %TC), Atropine (Elemental Microanalysis, B2002, 4.84 %TN, 70.56%TC), and GoniLab Secondary Standard (low %C)-A1 (an internal standard of sediment from the Gulf of Mexico, MV0803, with low carbon - 0.12 %N, 1.3 %C).
DOI: 10.5281/zenodo.4922027
title: HOE_Legacy2A-KM1513-PCPN-UW_2020-05-01_v1.0

description: For the Hawaii Ocean Experiment (HOE) Legacy 2A cruise aboard the Kilo Moana in the north Pacific Ocean, the carbon and nitrogen content of particulate material (PC, PN) was collected by semi-automated and sequential filtration of the ship’s underway flow through seawater onto a combusted GFF filter. Following filtration, filters were folded in half and placed in combusted aluminum foil and stored at -80°C for later analysis. Post-cruise, all filters were thawed and dried overnight at 60°C. Samples were then balled into Ag and Sn boats and plated for analysis. Organic carbon and total nitrogen content was analyzed using high-temperature combustion (1020 C) on a ThermoQuest NC 2500 elemental analyzer. Three standards with known %C and %N were weighed, folded in tin boats, and analyzed with the samples to develop the calibration equation for each run. The calibration equation was then used to calculate the mass (mg) of carbon and nitrogen in each sample using EAS Clarity Chromatography Station software. The standards are Cystine (Elemental Microanalysis, B2035, 11.66 %TN, 29.99 %TC), Atropine (Elemental Microanalysis, B2002, 4.84 %TN, 70.56%TC), and GoniLab Secondary Standard (low %C)-A1 (an internal standard of sediment from the Gulf of Mexico, MV0803, with low carbon - 0.12 %N, 1.3 %C).
DOI: 10.5281/zenodo.4792312
title: A national map of riverine median bed-material particle size over CONUS

description: This is a vector-format map (polyline shapefiles) of the median bed-material sediment particle size (D50) over the contiguous United States. This map is derived by combining the USGS sediment observations, the channel and watershed characteristics from two existing datasets (medium-resolution NHDplus and ScienceBase), and state-of-the-art machine learning techniques.
description: This research is supported by the Office of Science of the U.S. Department of Energy as part of the Earth System Modeling program through the Energy Exascale Earth System Model (E3SM) project. The Pacific Northwest National Laboratory is operated by Battelle for the U.S. Department of Energy under Contract DE-AC05-76RLO1830.
DOI: 10.5281/zenodo.4922040
title: HOE_Legacy2A-KM1513-LISST-Optics_2021-05-01_v1.0

description: This dataset comes from sampling performed on the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. All LISST data are collected with a LISST-100X Type-B instrument operated in underway mode. The angular range (median of bin) of the LISST Type-B is 0.106-17.96 degrees, and the size classes sensed are 1.44 - 231 microns (median of each size bin) albeit only particles less than 100 µm are considered here (see dataset_references). HOE-Legacy underway particle size distributions were merged with hourly mean HOE-Legacy PAR and ships position from UH Underway data files. All data have been corrected for background scattering of 0.2 micron filtered seawater sampled the first ten minutes of each hour. Data are presented as hourly means. The volume concentration of particles (VD, in µL/L), the standard LISST output, is presented for 3 size ranges: 1.25-2 µm (VDsm), 2-20 µm (VDmed), and 20-100 µm (VDlg). Particle volume concentration is then converted to particle concentration by assuming spherical particles. The total particle concentration (nL, #/L) is calculated for particles with a diameter between 1.25 and 100 um. Larger size classes are excluded due to low detection limits. Of note is the finding that diel cycles in particle concentrations are most evident in the 2-20 µm size class; this size class drives diel variability in particle concentrations (#/L).
DOI: 10.5281/zenodo.4922039
title: HOE_Legacy2A-KM1513-LISST-Optics_2021-05-01_v1.0

description: This dataset comes from sampling performed on the Hawaii Ocean Experiment - Legacy 2A cruise aboard the R/V Kilo Moana (cruise KM1513) in the north Pacific subtropical gyre. All LISST data are collected with a LISST-100X Type-B instrument operated in underway mode. The angular range (median of bin) of the LISST Type-B is 0.106-17.96 degrees, and the size classes sensed are 1.44 - 231 microns (median of each size bin) albeit only particles less than 100 µm are considered here (see dataset_references). HOE-Legacy underway particle size distributions were merged with hourly mean HOE-Legacy PAR and ships position from UH Underway data files. All data have been corrected for background scattering of 0.2 micron filtered seawater sampled the first ten minutes of each hour. Data are presented as hourly means. The volume concentration of particles (VD, in µL/L), the standard LISST output, is presented for 3 size ranges: 1.25-2 µm (VDsm), 2-20 µm (VDmed), and 20-100 µm (VDlg). Particle volume concentration is then converted to particle concentration by assuming spherical particles. The total particle concentration (nL, #/L) is calculated for particles with a diameter between 1.25 and 100 um. Larger size classes are excluded due to low detection limits. Of note is the finding that diel cycles in particle concentrations are most evident in the 2-20 µm size class; this size class drives diel variability in particle concentrations (#/L).
DOI: 10.6084/m9.figshare.14759094
title: Seasonal mode-1 M2 internal tide models

description: Seasonal mode-1 M<sub>2</sub> internal tide models constructed from 25 years of satellite altimeter data 1992-2017.
DOI: 10.5281/zenodo.4920981
title: Mass spectrometry imaging (MSI) datasets

description: Mass spectrometry imaging (MSI) datasets.
DOI: 10.5281/zenodo.4920980
title: Mass spectrometry imaging (MSI) datasets

description: Mass spectrometry imaging (MSI) datasets.
DOI: 10.6084/m9.figshare.14759157
title: Effect of sheep grazing on seed circulation on the Loess Plateau.xlsx

description: Effect of sheep grazing on seed circulation on the Loess Plateau
DOI: 10.6084/m9.figshare.14759157.v1
title: Effect of sheep grazing on seed circulation on the Loess Plateau.xlsx

description: Effect of sheep grazing on seed circulation on the Loess Plateau
DOI: 10.3886/e113620v1-88640
title: Replication data for: Income Opportunities and Sea Piracy in Indonesia: Evidence from Satellite Data

description: The effect of climatic variation on conflict and crime is well established, but less is known about the mechanism through which this effect operates. This study contributes to the literature by exploiting a new source of exogenous variation in climate to study the effect of fishermen's income opportunities on sea piracy. Using satellite data to construct a monthly measure of local fishing conditions it is found that better income opportunities reduce piracy. A wide range of approaches are employed to ensure that these effects are driven by income opportunities rather than other mechanisms through which climate could affect piracy. (JEL D74, J31, K42, O13, O17, Q22, Q54)
DOI: 10.6084/m9.figshare.14518206.v1
title: genome annotation of 10 bacteria superscaffolds of Porphyra haitanensis.

description: genome annotation of 10 bacteria superscaffolds of Porphyra haitanensis.
DOI: 10.6084/m9.figshare.14518206
title: genome annotation of 10 bacteria superscaffolds of Porphyra haitanensis.

description: genome annotation of 10 bacteria superscaffolds of Porphyra haitanensis.
DOI: 10.6084/m9.figshare.14518149.v1
title: 10 bacteria superscaffolds of Pyropia haitanensis

description: Metagenome or environmental sample from Pyropia haitanensis. We got 10 superscaffolds from Pyropia haitanensis genome assembly.<br>
DOI: 10.6084/m9.figshare.14518149
title: 10 bacteria superscaffolds of Pyropia haitanensis

description: Metagenome or environmental sample from Pyropia haitanensis. We got 10 superscaffolds from Pyropia haitanensis genome assembly.<br>
DOI: 10.6084/m9.figshare.14528442
title: Biodiesel in Brazil: Carla Costa do Nascimento

description: Interview Participant: Carla Costa do NascimentoLocation (Town/District/State/Country): Povoado de Catarina -Ourolandia- Bahia, BrazilInterview Date: 13/05/2010Interview Language: PortuguesePhD Research Title: Social Sustainability in Biodiesel Production: Brazil and Timor-LesteUniversity: University of Technology SydneyMain Researcher: Sarina KilhamSecondary Researchers (if Present): Catarina Camargo (2nd Researcher)Ednilson Ribeiro Santos (Videographer)Fund source: Research partly funded by Australian Postgraduate Award and ETC Energy GrantVideo of Interview: YesAudio of Interview: YesParticipant to remain anonymous: No<br><b>General Project Information</b><b><br></b>This was a qualitative transdisciplinary research project undertaken as part of PhD research by Sarina Kilham.The purpose of this research was to consider smallholder farmers participation in biodiesel schemes and the ways that biodiesel schemes have been incorporated into rural livelihoods. This study provides a way to bring smallholder farmers’ experiences to the fore in the biodiesel debate. I interviewed smallholder farmers participating in government led biodiesel schemes in Brazil and Timor-Leste. These two biodiesel schemes were chosen due to similarities between the rural development and social inclusion goals of each scheme. I used a transdisciplinary research approach that was problem-centred, collaborative and methodologically flexible. Through the application of Grounded Theory Method to the farmer informants’ narratives, I developed a novel conceptual framework titled the Autonomous Livelihood Framework.<br>Archiving the data was approved by the University of Technology Sydney Human Research Ethics Committee - project protocol 2010-105A. Each farmer informant was explicitly asked about inclusion of their material in the databank and informed about the embargo periods imposed on the data. All data included in this dataset has been approved by the farmer participants.<br>Each farmer informant was explicitly asked about inclusion of their material in the databank and informed about the embargo periods imposed on the data. The conditions on the data were designed as such:Embargo Period:(a) Transcriptions: available 5 years post-interview(b) Full audio: available 10 years post-interview(c) Full video: available 20 years post-interview<br><br>