cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13319042
title: Sprent, 2008

description: Sprent, J.I. 2008. Evolution and diversity of legume symbiosis. In: Nitrogen-fixing Leguminous Symbioses, Michael J. Dilworth, Euan K. James, Janet I. Sprent, William E. Newton (Eds). Springer Science & Business Media, Jan 18, 2008. 403 pages. https://books.google.com/books?id=bP31OzlCz0UC
DOI: 10.15468/dl.9xphz3
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colletes validus Cresson, 1868"
 ]
}

 The dataset's 2 records were derived from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000536-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e219882
title: Italy in Wide Angle: Workforce, emigration, population and GDP at the provincial level in Republican Italy (1951-1991).

description: This is a new dataset containing provincial and yearly data on Italy from 1951 to 1991. In particular, it contains:<br>- female and male workforce divided by sector (total, agriculture, industry and services)<br>- female and male participation rates divided by sector (total, agriculture, industry and services)<br>- migrations data (registrations and cancellations, from/towards foreign countries and other italian provinces, divided by gender)<br>- GDP estimates divided by sector (total, agriculture, industry, services and per capita GDP) both at current and constant prices (2005 euros)<br>- population by class of age and gender
DOI: 10.3886/e219882v1
title: Italy in Wide Angle: Workforce, emigration, population and GDP at the provincial level in Republican Italy (1951-1991).

description: This is a new dataset containing provincial and yearly data on Italy from 1951 to 1991. In particular, it contains:<br>- female and male workforce divided by sector (total, agriculture, industry and services)<br>- female and male participation rates divided by sector (total, agriculture, industry and services)<br>- migrations data (registrations and cancellations, from/towards foreign countries and other italian provinces, divided by gender)<br>- GDP estimates divided by sector (total, agriculture, industry, services and per capita GDP) both at current and constant prices (2005 euros)<br>- population by class of age and gender
DOI: 10.5281/zenodo.14884592
title: Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications

description: Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications

Agnieszka Kowalczyk, Jarosław Pura, Agata Sotniczuk, Halina Garbacz

This record contains all files generated in the preparation process of the following publication: 

Agnieszka Kowalczyk, Jarosław Pura, Agata Sotniczuk, Halina Garbacz,"Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications", submitted to Tribology International.

Designations: 

TNZ- - Ti-13Nb-13Zr alloy -CR- - sample cold-rolled with the reduction in the rod thickness of 90%-G- - sample grinded on #600 grit abrasive paper-SP- - sample shot-peened with 90-150 µm shots, under the pressure of 0.6 MPa and etched in the Kroll's reagentEDS - Energy Dispersive SpectroscopySEM - Scanning Electron Microscopy XRD - X-ray diffraction

Folders content:



Corrosion - with files with data of corrosion tests, obtained from electrochemical tests

EDS - analysis of chemical composition of the samples using an EDS detector

Hardness - contains results from the hardness tests of the samples

Microstructure - contains images of the microstructure of the samples in the initial state (TNZ) and cold-rolled (TNZ-CR)

Nanoindentation - contains results from the nanoindentation test

SEM - contains folders with images of samples surfaces from Scanning Electron Microscopes. Subfolders:



SEM_1_Initial_Cross-section - SEM images of the cross-sections of shot-peened samples in the initial state

SEM_1_Initial -SEM images of the samples in the initial state, before wear test

SEM_2_Wear - SEM images of the samples after the wear test

SEM_3_Wear_Clean - SEM images of the samples after the wear test and with cleaned wear products

SEM_Al2O3_pins - SEM images of the Al2O3 pins after wear test



Topography - contains folders with results of samples topography from the optical profilometer. Subfolders:



Topography_1_Initial - results for samples in the initial state, before the wear test

Topography_2_Wear - results for samples after the wear test



Tribology tests    - contains files from the tribology test 


This research was supported financially by the National Science Centre, Poland under the grant OPUS 23 [2022/45/B/ST5/03398].
DOI: 10.5281/zenodo.14884593
title: Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications

description: Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications

Agnieszka Kowalczyk, Jarosław Pura, Agata Sotniczuk, Halina Garbacz

This record contains all files generated in the preparation process of the following publication: 

Agnieszka Kowalczyk, Jarosław Pura, Agata Sotniczuk, Halina Garbacz,"Effect of bulk and surface mechanical treatments on the tribological properties of Ti-13Nb-13Zr alloy for biomedical applications", submitted to Tribology International.

Designations: 

TNZ- - Ti-13Nb-13Zr alloy -CR- - sample cold-rolled with the reduction in the rod thickness of 90%-G- - sample grinded on #600 grit abrasive paper-SP- - sample shot-peened with 90-150 µm shots, under the pressure of 0.6 MPa and etched in the Kroll's reagentEDS - Energy Dispersive SpectroscopySEM - Scanning Electron Microscopy XRD - X-ray diffraction

Folders content:



Corrosion - with files with data of corrosion tests, obtained from electrochemical tests

EDS - analysis of chemical composition of the samples using an EDS detector

Hardness - contains results from the hardness tests of the samples

Microstructure - contains images of the microstructure of the samples in the initial state (TNZ) and cold-rolled (TNZ-CR)

Nanoindentation - contains results from the nanoindentation test

SEM - contains folders with images of samples surfaces from Scanning Electron Microscopes. Subfolders:



SEM_1_Initial_Cross-section - SEM images of the cross-sections of shot-peened samples in the initial state

SEM_1_Initial -SEM images of the samples in the initial state, before wear test

SEM_2_Wear - SEM images of the samples after the wear test

SEM_3_Wear_Clean - SEM images of the samples after the wear test and with cleaned wear products

SEM_Al2O3_pins - SEM images of the Al2O3 pins after wear test



Topography - contains folders with results of samples topography from the optical profilometer. Subfolders:



Topography_1_Initial - results for samples in the initial state, before the wear test

Topography_2_Wear - results for samples after the wear test



Tribology tests    - contains files from the tribology test 


This research was supported financially by the National Science Centre, Poland under the grant OPUS 23 [2022/45/B/ST5/03398].
DOI: 10.15468/dl.w6ym58
title: Occurrence Download

description: A dataset containing 8198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylactolaemata"
 ]
}

 The dataset includes 8198 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000549-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.farqmx
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-117.61654 49.49819,-117.59922 49.49819,-117.59922 49.51993,-117.61654 49.51993,-117.61654 49.49819))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 111 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000550-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/2wsrke
title: CNR-IPSP Tree Fungal Pathogens Dataset (collection CNR-IPSP-FPOFUAOPWS)

description: The dataset includes Ascomycetous fungi isolated from forest and urban trees (Ophiostoma ulmi, O.novo-ulmi , Ceratocystis platani, Diplodia sapinea, Botryosphaericeae) and oomycetes isolated in ornamental nursery (Pythium, Phytophthora, Mortariella). The CNR-IPSP-FPOFUAOPWS collection preserves about 1500 strains for research purposes, also includes strains from collections of other Research centers or Universities. The strains are mainly isolated from plant tissues in different geographical areas. Preservation techniques: (i) CRYO: Freezer at -20 °C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/v) or in pure water; (ii) FRESH CULTURES: Refrigerator at 4 °C in agar slants with mycelium. The ultimate goals of the collection are: taxonomical Identification (morphological, molecular), molecular typing; isolation, preservation and cultivation of microorganisms; population genetic studies; genetic and phenotypic variability; host-pathogen interaction; inoculation for disease resistance; biocontrol; ecological and physiology studies, biochemical characterization. The collection is a partner of the MIRRI Italian Node (https://www.mirri-it.it).
DOI: 10.60520/ieda/113370
title: Whole-rock elemental analysis for lower Pliocene marine sediments from IODP Site U1533, Amundsen Sea, Antarctica

description: Major and trace element geochemistry of lower Pliocene marine sediment core samples collected at International Ocean Discovery Program Site U1533 in the Amundsen Sea via ICP-MS. Bulk samples of mud or sandy mud were analyzed to assess sediment provenance using elemental ratios. The geochemical data were collected and analyzed by Olga Libman-Roshal and Sandra Passchier, assisted by Xiaona Li in the ICP-MS analytical work.
DOI: 10.15468/dl.qu9r6e
title: Occurrence Download

description: A dataset containing 13583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "TaxonKey is Salamandra salamandra (Linnaeus, 1758)"
 ]
}

 The dataset includes 13583 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000551-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ab5n26
title: Occurrence Download

description: A dataset containing 4997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 },
 "TaxonKey is Hippotragus equinus (É.Geoffroy Saint-Hilaire, 1803)"
 ]
}

 The dataset includes 4997 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000552-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14469/hpc/14750
title: NMR data for compound 5. N-(2-(dimethylamino)-5-(trifluoromethyl)phenyl)-2-phenylacetamide. 13C

description: NMR data for compound 5. N-(2-(dimethylamino)-5-(trifluoromethyl)phenyl)-2-phenylacetamide. 13C
DOI: 10.7266/n74j0c32
title: 2013-2014 NOAA CTD data and sediment trace metals
DOI: 10.5281/zenodo.14876674
title: Integrated Ultrasound Neuromodulation and Optical Neuroimaging in Awake Mice using a Transparent Ultrasound Transducer Cranial Window
DOI: 10.5281/zenodo.14876675
title: Integrated Ultrasound Neuromodulation and Optical Neuroimaging in Awake Mice using a Transparent Ultrasound Transducer Cranial Window
DOI: 10.6084/m9.figshare.28436606
title: SpatialCC-12M

description: Spatial transcriptomics quantifies gene expression within its spatial context, significantly advancing biomedical research. Understanding gene spatial expression and the organization of multicellular systems is vital for disease diagnosis and studying biological processes. However, existing models often struggle to integrate gene expression data with cellular spatial information effectively. In this study, we introduce SpatialFormer, a hybrid framework combining convolutional networks and transformers to learn single-cell multimodal and multi-scale information in the niche context, including expression data and subcellular gene spatial distribution. Pre-trained on 300 million cell pairs from 12 million spatially resolved single cells across 62 Xenium slides, SpatialFormer merges gene spatial expression profiles with cell niche information via the pair-wise training strategy. Our findings demonstrate that SpatialFormer distills biological signals across various tasks, including single-cell batch correction, cell-type annotation, co-localization detection, and identifying gene pairs that are critical for the immune cell-cell interactions involved in the regulation of lung fibrosis. These advancements enhance our understanding of cellular dynamics and offer new pathways for applications in biomedical research.
DOI: 10.15468/dl.67jnpv
title: Occurrence Download

description: A dataset containing 1052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-71.67 2.688,-70.668 2.688,-70.668 3.655,-71.67 3.655,-71.67 2.688))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1052 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000553-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7csxx
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON((-137.8435 49.2825,-106.49101 49.2825,-106.49101 59.39563,-137.8435 59.39563,-137.8435 49.2825))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Schoenoplectus acutus (Muhl. ex Bigelow) Á.Löve & D.Löve"
 ]
}

 The dataset includes 198 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000554-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5thtvb
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (FishBase Database, CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Philippe KEITH, Poissons d'eau douce de Guyane française, Universidad del Valle de Guatemala - Colecciones Biológicas - Peces, Museum of Comparative Zoology, Harvard University, Observation.org, Nature data from around the World, CAS Ichthyology (ICH), University of Michigan Museum of Zoology, Division of Fishes, Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anableps Scopoli, 1777"
 ]
}

 The dataset includes 461 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000555-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrcwke
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycalopex culpaeus (Molina, 1782)"
 ]
}

 The dataset includes 67 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000557-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btszuq
title: Occurrence Download

description: A dataset containing 757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is KZNM-PINDIP-DIPTATEACH",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tabanidae"
 ]
}

 The dataset includes 757 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000558-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kpxg5
title: Occurrence Download

description: A dataset containing 2394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Continent is Africa",
 "Country is one of (Kenya, Ethiopia)",
 "Geometry POLYGON((36.99952 14.06674,32.9907 8.43013,34.76516 4.9315,33.75969 -0.20144,39.79248 -5.66638,41.80341 -1.54187,49.62369 6.37674,51.07603 10.35496,51.07491 11.89296,49.43713 11.48076,47.72448 8.26039,42.92059 10.24505,42.38689 12.75705,41.19374 13.61755,39.04492 14.97403,36.99952 14.06674))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Loxodonta africana (Blumenbach, 1797)",
 "Year 1991-2025"
 ]
}

 The dataset includes 2394 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000559-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7931/6g9w-ag26
title: No. 40 - Assessing permeability class from soil morphology
DOI: 10.15468/dl.zjjr44
title: Occurrence Download

description: A dataset containing 11477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera leo (Linnaeus, 1758)"
 ]
}

 The dataset includes 11477 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000560-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hg4r76
title: Occurrence Download

description: A dataset listing the 50 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-78.2802 0.62558,-78.28918 0.62558,-78.28919 0.61293,-78.29817 0.61293,-78.29817 0.60299,-78.30445 0.60299,-78.30448 0.54787,-78.24793 0.54784,-78.24794 0.50898,-78.19319 0.50896,-78.19318 0.52974,-78.13573 0.52972,-78.13571 0.58032,-78.14379 0.58032,-78.14378 0.59117,-78.14377 0.61195,-78.2443 0.612,-78.24431 0.60296,-78.28022 0.60298,-78.2802 0.62558))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 50 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000556-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwnwsk
title: Occurrence Download

description: A dataset containing 757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is KZNM-PINDIP-DIPTATEACH",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tabanidae"
 ]
}

 The dataset includes 757 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000561-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14879679
title: snRNAseq_human_hippocampus

description: snRNAseq mRNA library preparation and sequencingSingle-nuclei capture was performed following the 10x Chromium manufacturer’s instructions (Chromium Next GEM Single Cell 3' GEM, Library & Gel Bead Kit v3.1 Cat No 1000121, User Guide). Each sample was analyzed in a separate batch and the majority included one or more replicates. For each batch, 3’ snRNAseq libraries were prepared according to the manufacturer’s instructions. Libraries were sequenced on NextSeq500 (Illumina), NovaSeq6000 (Illumina) or DNBSEQ G400RS (MGI) machines. For NextSeq runs, denatured libraries were loaded on 75 cycle or 150 cycle HighOutput v2.5 cartridges at a final molarity of 1.8 pM. NovaSeq6000 runs were performed at the National Genomics Infrastructure (NGI) at SciLifeLab Stockholm, Sweden. For G400RS runs, 50ng of Illumina-style libraries were converted to circular ssDNA libraries using the MGIEasy Universal Library Conversion Kit (MGI) and employing 5 cycles of conversion PCR. Subsequently, 60 fmol of circular ssDNA was used to make DNA nanoballs (DNBs) using a custom rolling-circle amplification primer (5‘-TCGCCGTATCATTCA AGCAGAAGACG-3’) prior to sequencing. DNBs were loaded on FCL flow cells (MGI) and sequenced on PE100 cartridges with 26 cycles on read1, 160 bases on read 2 and 8 bases single index reads. The following custom primers were used in the sequencing cartridge: Read 1: 5’-ACACTCTTTCCCTACACGACGCTCTTCCGATCT-3’; MDA: 5’-CGTATGCCGTCTTCTGCTTGAATGATACGGCGAC-3’; Read 2: 5’-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT-3’; i7 index 5’-CCGTATCATTCAAGCAGAAGACGGCATACGAGAT-3’.

Primary data processingAll Illumina-based data were converted to fastq files using bcl2fastq (v2.20.0.422) with the ‘--create-fastq-for-index-reads’ flag. We next demultiplexed the data into one pair of fastq files for each 10x Genomics chip channel using deML (v1.1.3)(42) and allowing up to 2 mismatches. Demultiplexed reads were processed using zUMIs (v2.9.4f)(43), applying filtering and error correction (1 edit-distance) to barcode and UMI sequence. Within zUMIs, cDNA reads were aligned to the human genome (hg38) and gene-wise UMI-counts produced from intronic + exonic gene portions as annotated in Gencode (v35). To account for contaminating reads from ambient RNA in the droplet-based sample preparation, we exported counts from all droplets into Cellbender (v0.2)(44). Running the remove-background command using the CUDA implementation on a RTX3080 (Nvidia), we determined high-probability droplets containing nuclei and produced background subtracted count tables. The data obtained was filtered for nuclei that have between 200 and 15000 unique features (genes) detected and less than 20% mitochondrial feature.