cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/znsxdctwtt
title: Dhan-Shomadhan: A Dataset of Rice Leaf Disease Classification for Bangladeshi Local Rice

description: 1. Dhan-Shomadhan: A datasets of 5 different harmful diseases of rice leaf called Brown Spot, Leaf Scaled, Rice Blast, Rice Turngo, Steath Blight. 2. Dhan-Shomadhan datasets contains 1106 picture in two different background variation named field background picture and white background picture. 3. Dhan-Shomadhan datasets can use for rice leaf diseases classification, diseases detection using Computer Vision and Pattern Recognition for different rice leaf disease.
DOI: 10.25403/upresearchdata.26319208.v1
title: <b>Air pollution in the City of Tshwane, South Africa</b>

description: The research is about the assessment of indoor and outdoor air pollution health risks in Mabopane and Soshanguve townships in the City of Tshwane, South Africa. The study followed a cross-sectional design; which included questionnaire surveys, measurements of ambient PM2.5, and human health risk assessments.
DOI: 10.6084/m9.figshare.1323271.v1
title: Inverse Gaussian Processes With Random Effects and Explanatory Variables for Degradation Data

description: Degradation models are widely used to assess the lifetime information of highly reliable products. This study proposes a degradation model based on an inverse normal-gamma mixture of an inverse Gaussian process. This article presents the properties of the lifetime distribution and parameter estimation using the EM-type algorithm, in addition to providing a simple model-checking procedure to assess the validity of different stochastic processes. Several case applications are performed to demonstrate the advantages of the proposed model with random effects and explanatory variables. Technical details, data, and R code are available online as supplementary materials.
DOI: 10.6084/m9.figshare.24550477.v2
title: Biased Placement of Mitochondria Fission Facilitates Asymmetric Inheritance of Protein Aggregates during Yeast Cell Division

description: This repository contains data for "<b>Biased Placement of Mitochondria Fission Facilitates Asymmetric Inheritance of Protein Aggregates during Yeast Cell Division</b>" in PLOS Computational Biology.mitoInheritance_datasets-main.zip &gt;&gt; contains data necessary to reproduce the figures in the publication.mitoInheritance_plasmidSeqs.zip &gt;&gt; contains plasmid sequence data mitoInheritance_yeastSeqs.zip &gt;&gt; contains yeast DNA sequences for strains in paper
DOI: 10.6084/m9.figshare.28138766.v1
title: Genome annotation (repeats and protein-coding genes) of Drosophila suzukii

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.6084/m9.figshare.3525107.v1
title: Supplement 1. Data and computer programs for fitting multinomial mixture models used in the main article.

description: File List frogindex.Rdump Description The file frogindex.Rdump is an <b>R</b> dump file that contains 3 <b>R</b> objects. This file should be loaded into <b>R</b> by issuing the command source("frogindex.Rdump") from an active <b>R</b> session. This will yield 3 objects defined subsequently. The file frogindexmodel.fn is an <b>R</b> script containing the commands for fitting multinomial mixture models. Some familiarity with <b>R</b> or the S language is assumed. As an illustration, the model contained in the first row of Table 2 of Royle and Link is fitted and the resulting output is returned. <br> <br> The remaining two objects are data matrices -- gf.data contains the Greenfrog calling index data. This is a matrix where rows index sample locations and columns index sample occasions. Missing values are indicated by "NA" <br> The file gf.temp contains the temperature covariate data, in the same matrix format [sites × occasions].
DOI: 10.6084/m9.figshare.8850119.v2
title: Subsoil AMF_1

description: Illumina MiSeq dataset containing partial LSU sequences from Glomeromycota, belonging to a Top- Subsoil fungal diversity study. <br>Subsoil arbuscular mycorrhizal fungal communities in arable soil differ from those in topsoil. <br>https://doi.org/10.1016/j.soilbio.2017.11.009<br>
DOI: 10.17632/nf853r8xsj
title: Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients. Filbin et al.

description: Supplementary tables for the paper: Filbin et al. Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients (2021). Cell Reports Medicine. Accepted.
DOI: 10.17632/sbjykmmz4s
title: JNUCLS

description: JNUCLS database: The JNUCLS database contains labeled chili species leaf imagescultivated and collected at Rural Development Administration (RDA) in Jeonju, Repiblic of Korea. Camera system settings were done based on Yu et al. (2023) (Yu JK, Chang S, Han GD, Kim SH, Ahn J, Park J, Kim Y, Kim J, Chung YS. Implication of high variance in germplasm characteristics. Scientific Reports. 2023 Jan 10;13(1):515.).Chili varieties are cultivated under controlled environmental conditions, including temperature, irrigation, and fertilizer. The experiment is conducted in an experimental garden with 77 chili species, each randomly arranged in a plot in the greenhouse and marked with a species code. Each species is planted with 6 trees per sample plot, and 6 leaf samples are taken for each species. Sampling occurs when plants have flowered, and leaves are chosen based on standardized criteria (area, weight, color, etc.). Images are captured using a Canon digital camera under uniform lighting conditions, consistent distance, and the same shooting angle. They are saved in JPG format with a pixel resolution of 6024 × 4024. The total number of images in the database was 552
DOI: 10.17632/tg2h66tkmj
title: Auricular antitragus chondrocutaneous composite graft: A novel technique for reconstruction of full-thickness columella defects

description: Columellar necrosis often results in injury to the overlying columellar skin, the medial crura of the lower lateral nasal cartilages, and the anteromedial inner nasal mucosa and possibly the anterior septal cartilage.  The auricular chondrocutaneous composite graft is one of the best reconstructive methods to date. However, the risk of graft failure and deformity of the donor site increases with increasing graft size.
DOI: 10.6084/m9.figshare.14576193.v4
title: Benchmark datasets for DeepMicroClass

description: Usage: DeepMicroClass predict [-h] --input INPUT --output_dir OUTPUT_DIR [--model MODEL] [--encoding {onehot,embedding}] [--mode {hybrid,single}] [--single-len SINGLE_LEN] [--device {cpu,cuda}]Benchmark_datasets.zip: 20 benchmark datasets for DeepMicroClass. Prokaryote:PROK ProkaryoteVirus: PROKVIR Plasmid: PLSMD Eukaryote:EUK EukaryoteVirus: EUKVIREach row of the output prediction file contains the scores from the neural network for class label assignment. The higher the score, the more likely the class label for a given sequence.<br>
DOI: 10.6084/m9.figshare.21081955.v2
title: Professional Development in Reading Comprehension

description: Codebooks for meta-analysis on teacher professional development.
DOI: 10.17632/987dhdtnyt
title: EVALUATION OF ANTICANCER THERAPY- RELATED DERMATOLOGIC ADVERSE EVENTS: INSIGHTS FROM FDA's FAERS DATASET

description: This repository contains supplementary materials for the paper titled "EVALUATION OF ANTICANCER THERAPY- RELATED DERMATOLOGIC ADVERSE EVENTS: INSIGHTS FROM FDA's FAERS DATASET" published in JAAD.
Other resources may be found in
DOI: 10.17632/d5x7xzw9nd
title: Cutaneous and non-cutaneous features in patients with neurofibromatosis type 1: A retrospective cohort study including 644 patients

description: Cutaneous and non-cutaneous features in patients with neurofibromatosis type 1: A retrospective cohort study including 644 patients.
DOI: 10.25400/lincolnuninz.9122504.v1
title: Appendix D Endophytic fungi from cabbage in New Zealand 2016

description: Table of fungal isolates recovered from cabbage (Brassica oleracea var capitata) in New Zealand on February 2016. Columns contain a recorded value for variables:<br><br>frag_no - arbitrary tissue fragment numbering <br>region - regions in New Zealand where cabbage plants were sampled (Canterbury – h, Nelson – m and Pukekohe – a).<br>plant - arbitrary numbering of plants in given region<br>part - cabbage tissue R- root, S -stem, L - leaf<br>medium - cultivation medium - Potato dextrose agar (p), 1/4 strength potato dextrose agar (1), Sabouraud dextrose agar (s) and Aspergillus minimal medium (a)<br>well - arbitrary numbering of wels on cultivation plate<br>for plant2, part2, medium2 similar to above<br>fragment - code for tissue fragment from which given isolate originated<br>isolate - code for isolate<br>description of morphotypes<br>mycelium_color - colour of mycelium <br>mycelium_color_under - colour of the bottom of cultivation dish<br>mycelium_texture - texture of mycelim <br>sclerotia - whether present or not<br>spores - colour and texture of spores concentric on petri dish (conc), <br>media_coloring - colouring of the cultivation media by growing isolate<br> colours white (w), grey(g), green(gn), brown(b), yellow(yel), black (bl), purple (pu), orange (o), pink (pi), beige (be), dark(dk), light(li), pinch (P)<br> texture - fluffy (fl), growing in agar (ia), yeast-like (yes), chunky (ch) scant (s), compact (comp), flat(ft)<br> other abbreviations - somewhat (sw), in mycelium (im), vis (visible), dry (d), oozing (ooze), fragmente (frg), at the edge of colony (oe)<br><br>sequence - ITS sequence <br>MatchUNITE - match with UNITE database<br>identityUNITE - BLAST identity result for the best match with UNITE database<br>lengthUNITE - BLAST length result for the best match with UNITE database<br>lineageUNITE - taxonomy extracted from the best match with UNITE database<br>speciesUNITE - species extracted from the best match with UNITE database<br>genusUNITE- genus extracted from the best match with UNITE database<br>identityNCBI - BLAST identity result for the best match with NCBI database<br>MatchNCBI - BLAST identity result for the best match with NCBI database<br>speciesNCBI - species extracted from the best match with NCBI database<br>genusNCBI - genus extracted from the best match with NCBI database<br>lengthNCBI - BLAST length result for the best match with NCBI database<br>species - species name <br>genus - genus name <br>identity - BLAST identity result for the best match<br>blastlength - BLAST length result for the best match<br>seqlength - length of sequence<br>family - family name<br>order - order name<br>class - class name<br>phylum - phylum name
DOI: 10.6084/m9.figshare.13400009.v1
title: Data of test system

description: Data of test system
DOI: 10.6084/m9.figshare.20146850.v1
title: Amharic version questionnaire

description: Survey questionnaire Amharic version
DOI: 10.6084/m9.figshare.23803026.v2
title: A BRIEF EXPLORATION OF ARTIFICIAL INTELLIGENCE IN DENTAL HEALTHCARE.xlsx

description: Artificial intelligence is a computer system which can replicate human behavior and largely supports human actions and interpretation, but not replace human responses. Over the past few decades, the field of artificial intelligence (AI) has experienced phenomenal development and expansion. We are surrounded by several instances of AI. The most typical examples include Chat GPT, Alexa, Google Maps, Autocorrect and Text Editors, e-payments, Virtual Travel Booking Agent, Social Media Monitoring, gaming, including chess matches involving computers versus human chess masters, Self driving Cars, Adaptive Cruise Control, Parking Assistance, and Facial Recognition for Biometrics such as Retinal Scans and Fingerprint scans. AI has application in different branches of Dentistry . The future of AI in dentistry seems to be very promising with developments in Comprehensive AI technologies, AI dental assistance and advancements in dental educational tools with the incorporation of Artificial Intelligence. Artificial Intelligence is still in its introductory stages in Dentistry and lot of research must be done in this direction. This review article attempts to highlight these points and lays an emphasis on how AI is driving dentistry in the present and will improve dental care in the future.
DOI: 10.6084/m9.figshare.971043.v1
title: Sample weather balloon data

description: Sample "input_folder" weather balloon data used for the analysis in M. Connolly, and R. Connolly (2014). <em>The physics of the Earth’s atmosphere II. Multimerization of atmospheric gases above the troposphere</em>, Open Peer Rev. J., 22 (Atm. Sci.), ver. 0.1 (non peer reviewed draft) Weather balloon data was downloaded in April 2013 from the Integrated Global Radiosonde Archive (IGRA) dataset
DOI: 10.17632/ptv86nczbv
title: A flexible and low-cost spatially resolved transcriptomics strategy making molecular tissue profiling a widely available solution

description: Spatially-resolved transcriptomics methodologies are revolutionizing our understanding of complex tissues, but their elevated costs represent still a bottle-neck for their democratization. In this work we present a low-cost strategy for manufacturing molecularly double-barcoded DNA arrays, enabling large-scale spatially-resolved transcriptomics studies. We applied this technique to spatially resolve gene expression in several human brain organoids, including the reconstruction of a 3-dimensional view from multiple consecutive sections, revealing gene expression divergencies throughout the tissue.
DOI: 10.17632/ys2c25dk8j
title: Sources and Fates of sedimentary polycyclic aromatic hydrocarbons along the East Siberian Arctic Shelf: Implications for input pathways and black carbon constraint

description: The East Siberian Arctic Shelf (ESAS) is undergoing faster climate changes such as the decreasing sea ice, thawing permafrost and wildfires, which elevated the polycyclic aromatic hydrocarbons (PAHs) levels in the Arctic Ocean, and this region is expected to become a potential PAHs sink in sediments. Here we investigated the spatial heterogeneity of deposition and fate of PAHs together with black carbon (BC) within the ESAS. Our results explored the mixed petrogenic and pyrogenic sources of PAH. Furthermore, we found that disparate input pathways led to distinct PAH fates in coastal and open-sea regions of the ESAS, and BC likely exerts significant constraints on the behavior and fates of PAH. These carbonaceous compounds in the western ESAS is mainly affected by terrestrial inputs such as fluvial discharge and permafrost erosion, while the open-sea regions of the eastern shelf are largely driven by atmospheric delivery and biological deposition. The strong signals of emissions from permafrost along the coastal margins highlight the importance of seriously considering permafrost erosion might become a potential PAH contributor, especially with climate changes.
DOI: 10.6084/m9.figshare.20281902.v1
title: Stability and asynchrony of local communities but less so diversity increase regional stability of Inner Mongolian grassland

description: Data sets, R codes and details in analyses for "Stability and asynchrony of local communities but less so diversity increase regional stability of Inner Mongolian grassland"
DOI: 10.6084/m9.figshare.3526292.v1
title: Appendix F. A color version of Plate 1.

description: A color version of Plate 1.
DOI: 10.6084/m9.figshare.7763330.v7
title: AutoMated tool for Antimicrobial resistance Surveillance System (AMASS)

description: Version 1.1Release date: 12<sup>th</sup> January 2021 AMASS 1.1 fixes a typo in the R codes of the AMASS 1.0 that caused inaccurate estimations of the proportion of non-susceptible isolates of <i>E. coli </i>and <i>K. pneumoniae</i> for ampicillin (page 9-10 and page 18-21 in the AMR surveillance report).<br>AutoMated tool for Antimicrobial resistance Surveillance System (AMASS) was developed as an offline, open−access and easy−to−use application that allows a hospital to perform data analysis independently and generate isolate−based and sample−based surveillance reports stratified by infection origin from routinely collected electronic databases. The application was built in R, which is a free software environment. The application has been placed within a user−friendly interface that only requires the user to double−click on the application icon. <br>AMASS performs data analysis and generates reports automatically. The raw data files required are hospital admission and microbiology databases. Firstly, the application cleans the microbiology data file and produces isolate−based and sample−based surveillance reports without stratification by infection origin. Secondly, the application then merges the microbiology and hospital admission data files, analyzes the merged data, and produces an isolated−based and sample−based surveillance reports with stratification by infection origin. Finally, the application then perform a statistical analysis to estimate all−cause mortality of patients with AMR infection and mortality attributable to AMR, which are automatically added into the AMR surveillance report.<br>AMASS aims to support the local hospitals including those that have only microbiology results recorded in electronic formats. For example, only isolate−based surveillance report without stratification by infection origin will be generated, if only microbiology data file is available and hospital admission data file is not available in the computer.<br> This is the AMASS.zip containing the AMASS application. Further, details on how to use the application can be found in https://www.amass.website
DOI: 10.17632/7t9vsjhtf2
title: Souza et al. 2023

description: The published data refer to the article “IMPORTANCE OF CONSERVATION UNITS IN THE BIOGEOCHEMISTRY OF CERRADO STREAMS”, submitted to the Journal of South American Earth Sciences.
DOI: 10.6084/m9.figshare.29136194.v1
title: SAM2 segmentation test and comparison with manual segmentation

description: Visual comparison of 100 human annotations (labels) compared with Segment Anything Model 2 (SAM2) segmentation.
DOI: 10.6084/m9.figshare.3438938.v1
title: Supplementary Material for: Intrahepatic Size Regulation in a Surgical Model: Liver Resection-Induced Liver Regeneration Counteracts the Local Atrophy following Simultaneous Portal Vein Ligation

description: <b><i>Background/Aim:</i></b> Liver size regulation is based on the balance between hepatic regeneration and atrophy. To achieve a better understanding of intrahepatic size regulation, we explored the size regulation of a portally deprived liver lobe on a liver subjected to concurrent portal vein ligation (PVL) and partial hepatectomy (PHx). <b><i>Materials and Methods:</i></b> Using a surgical rat model consisting of right PVL (rPVL) plus 70% PHx, we evaluated the size regulation of liver lobes 1, 2, 3, and 7 days after the operation in terms of liver weight and hepatocyte proliferation. Portal hyperperfusion was confirmed by measuring portal flow. The portal vascular tree was visualized by injection of a contrast agent followed by CT imaging of explanted livers. Control groups consisted of 70% PHx, rPVL, and sham operation. <b><i>Results:</i></b> The size of the ligated right lobe increased to 1.4-fold on postoperative day 7 when subjected to rPVL + 70% PHx. The right lobe increased to 3-fold when subjected to 70% PHx alone and decreased to 0.3-fold when subjected to rPVL only. The small but significant increase in liver weight after the combined procedure was accompanied by a low proliferative response. In contrast, hepatocyte proliferation was undetectable in the right lobe undergoing atrophy after PVL only. The caudate lobe in the rPVL + 70% PHx group increased to 4.6-fold, which is significantly more than in the other groups. This increase in liver weight was paralleled by persisting portal hyperperfusion and a prolonged proliferative phase of 3 days. <b><i>Conclusions:</i></b> A discontinued portal blood supply does not always result in atrophy of the ligated lobe. The concurrent regenerative stimulus induced by 70% PHx seemed to counteract the local atrophy after a simultaneously performed rPVL, leading to a low but prolonged regenerative response of the portally deprived liver lobe. This observation supports the conclusion that portal flow is not necessary for liver regeneration. The persisting portal hyperperfusion may be crucial for the specific kinetics of prolonged liver regeneration after rPVL + 70% PHx in the portally supplied caudate lobe. Both observations deserve more attention regarding the underlying mechanism in further studies.
DOI: 10.6084/m9.figshare.7367498.v1
title: Teaching of Expressive Repertoire to Children Who Are Users of Cochlear Implants: a Literature Review

description: ABSTRACT: The aims of this research were (a) to verify the quantity of scientific productions that described procedures of teaching of expressive repertoire, according to Skinner's verbal categories (1957), to children with cochlear implants; (b) to characterize their methods, considering participants, stimuli, materials and experimental design used; (c) to identify manipulated independent variable and dependent measured variable. The methodology followed the PRISMA model for literature reviews and meta-analyzes; the search was done in the Web of Science with the descriptors and bullet points: "Cochlear Implant", [and] "Children" [and] "Language", [and] "Teaching". We found 39 papers and, after applying the exclusion criteria, we obtained 12 papers for analysis. Among them, eight papers described methodologies of expressive repertoire teaching. The data pointed out that a concentration of international publications between the years 2012 and 2015. The intraverbal operant has been the major target of the interventions found, followed by tact and textual ones. More than 50% of the studies made use of single-subject experimental designs, corroborating with the indications about the importance of this type of design for research in health and education. National publications were not found, although there is a strong line of research in the country. In order to avoid this situation, it is necessary to insert intentionally the research that is known to the set of researches found through systematic reviews. Synthesizing publications that present teaching methodologies to this population may favor Special Education professionals in the elaboration of their interventions and curricula.
DOI: 10.17632/b3697s73mt
title: Data for: Market Potential and Economic Development with Non-homotheticity

description: This data file is used to replicate the main results in Market Potential and Economic Development with Non-homotheticity. Please refer to the paper for detailed description.