cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tdmwr9
title: Occurrence Download

description: A dataset containing 930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clemmys insculpta Fitzinger, 1835"
 ]
}

 The dataset includes 930 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009546-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtfhxw
title: Occurrence Download

description: A dataset containing 18658 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Register of protected and endangered fungi of Poland (GREJ)"
 ]
}

 The dataset includes 18658 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009438-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g66u5a
title: Occurrence Download

description: A dataset containing 6782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prunus pensylvanica L.fil.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 6782 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009547-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmkk3b
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Avellara fistulosa (Brot.) Blanca & C.Díaz)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009439-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgfvbr
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acaridae"
 ]
}

 The dataset includes 210 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009549-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wk77c
title: Occurrence Download

description: A dataset containing 4865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Rangifer tarandus (Linnaeus, 1758)"
 ]
}

 The dataset includes 4865 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009548-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5rv0dc6r
title: MassIVE MSV000097275 - GNPS orthofluorofentanyl test Mar9
title: Cayman FAS kits, ortho fluoro fentanyl 1ppm, the other file contained a mixture
DOI: 10.15468/dl.pukj7h
title: Occurrence Download

description: A dataset containing 2306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epitrix pubescens (Koch, 1803)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2306 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009550-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuzgsy
title: Occurrence Download

description: A dataset containing 27068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prunus persica (L.) Stokes)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 27068 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009551-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jk4nn
title: Occurrence Download

description: A dataset containing 1235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrica rubra A.Chev."
 ]
}

 The dataset includes 1235 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014061-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxecg8
title: Occurrence Download

description: A dataset containing 1860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is Africa",
 "TaxonKey is Manihot esculenta Crantz",
 "Year 1900-2024"
 ]
}

 The dataset includes 1860 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014062-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9pywm2
title: Occurrence Download

description: A dataset containing 67512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.8_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 67512 records from 233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014059-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27950709
title: Niche partitioning associated intraspecific variation of <i>Thaumarchaeota</i> in the deepest ocean sediments

description: Deep-sea sediments host abundant <i>Thaumarchaeota</i> that are phylogenetically distinct from their pelagic relatives. However, their ecology and evolutionary adaptations remain largely unknown. Here, we performed metagenomic analyses on samples from different depths of a 750-cm sediment core collected from the Mariana Trench Challenger Deep. The abundance of<i> Thaumarchaeota</i> and archaeal <i>amoA</i> generally decreased with depth, except for an unexpected peak midway through the core. The retrieved thaumarchaeotal metagenome-assembled genomes were classified into diverse phylogenetic clusters affiliated with <i>amoA</i>-NP-γ, <i>amoA</i>-NP-θ and <i>amoA</i>-NP-δ of ammonia-oxidizing <i>Thaumarchaeota</i> and non-ammonia-oxidizing lineages. The most abundant group was nested within <i>amoA</i>-NP-γ, typically prevalent in coastal and shallow habitats, providing clues for niche expansion from marine shallow to hadal environments. This benthic group exhibited within-species genomic variations from the previously proposed Hadal water group, suggesting microdiversification of hadal <i>Thaumarchaeota</i> along with niche separation between benthic and pelagic environments. Evolutionary adaptations accompanying the benthic-to-pelagic transition included reduced genome size, loss of motility/cell adhesion, altered energy metabolism, and different substrate (e.g., ammonium) acquisition and regulation mechanisms. These findings provide novel insights on the evolution of hadal <i>Thaumarchaeota</i> and revealed, for the first time, intraspecies-level genomic variation in <i>Thaumarchaeota</i> linked to the benthic-<i>versus</i>-pelagic niche partitioning in the deep ocean.
DOI: 10.15468/dl.nxj7nv
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juniperus foetidissima Willd.",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 192 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014063-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13329652
title: CSES (ZH-1) Satellite magnetic field detection data with whistlers
DOI: 10.7488/ds/2836
title: IDEAL Household Energy Dataset

description: The IDEAL Household Energy Dataset comprises data from 255 UK homes. Alongside electric and gas data from each home the corpus contains individual room temperature and humidity readings and temperature readings from the boiler. For 39 of the 255 homes more detailed data is available, including individual electrical appliance use data, and data on individual radiators. Sensor data is augmented by anonymised survey data and metadata including occupant demographics, self-reported energy awareness and attitudes, and building, room and appliance characteristics. The 00README.txt download summarizes the contents of the other files.
description: documentation.zip - dataset documentation; metadata_and_surveys.zip - information about participating households and responses to surveys that were taken; coding.zip - example code for working with the dataset in Python; household_sensors.zip - Household-level sensor data; room_and_appliance_sensors.zip - Room and appliance level sensor data; auxiliary.zip - Other sensor data.
DOI: 10.21942/uva.21252300.v1
title: Dataset of Near-Infrared Spectral Data of Illicit-Drugs and Forensic Casework Samples Analyzed by Five Portable Spectrometers Operating in Different Wavelength Ranges

description: Dataset of Near-Infrared Spectral Data of Illicit-Drugs and Forensic Casework Samples Analyzed by Five Portable Spectrometers Operating in Different Wavelength Ranges. <br> Additional details can be found in the related Data in Brief manuscript (submitted). <br> This data is accompanying the research described in the article: R.F. Kranenburg, Y. Weesepoel, M. Alewijn, S. Sap, P.W.F. Arisz, A. van Esch, P.H.J. Keizers, A.C. van Asten, The Importance of Wavelength Selection in On-Scene Identification of Drugs of Abuse with Portable Near-Infrared Spectroscopy, Forensic Chem. (2022) 100437. https://doi.org/10.1016/j.forc.2022.100437
DOI: 10.25318/1410020601-eng
title:  Average hourly earnings for employees paid by the hour, by industry, annual

description: Average hourly earnings for employees paid by the hour, by North American Industry Classification System (NAICS) and overtime status, last 5 years.
DOI: 10.26093/cds/vizier.22580016
title: TESS Eclipsing Binary stars. I. Sectors 1-26

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'TESS Eclipsing Binary stars. I. Short-cadence observations of 4584 eclipsing binaries in sectors 1-26.' (bibcode: 2022ApJS..258...16P)
DOI: 10.26093/cds/vizier.36350043
title: Stellar rotation periods from K2 Campaigns 0-18

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Stellar rotation periods from K2 Campaigns 0-18. Evidence for rotation period bimodality and simultaneous variability decrease.' (bibcode: 2020A&A...635A..43R)
DOI: 10.26186/124084
title: Geological Field Sites, Samples and Observations Database

description: The Geoscience Australia Geological Observations and Samples database contains locations, geological observations, and descriptions of physical samples (specimens) from field sites, measured sections and boreholes associated with Geoscience Australia geological mapping surveys in Australia, its surrounds, and Antarctica since the 1960's. Descriptions include information on lithology, stratigraphy, alteration, structural measurements, and many other geological attributes.
DOI: 10.34740/kaggle/dsv/4472809
title: UNSW-NB15
DOI: 10.5281/zenodo.13913302
title: 3d_theorical_solution

description: This is a package including data and code. It is used to calculate the analytical solution of self-potential from regularly polarized bodies in layered seafloor model.
DOI: 10.5281/zenodo.13995144
title: The dataset of global methane emissions from rice paddies as affected by N fertilization

description: We conducted a meta-analysis to assess the N effects on CH4 emissions from rice paddies. We used the Web of Science to search journal articles published before November 2023 using search terms “rice OR paddy” and “methane OR CH4”, and “nitrogen OR N OR fertilizer OR fertilization”. To prevent selection bias, we only included papers that met the following criteria: (i) the continuous, multi-season fertilization experiments were conducted under field conditions with random design and replicates because N fertilization is typically a long-term practice, (ii) experiments adhered to cropping systems which are widely used by local farmers in the study area, (iii) the management practices (e.g. P and K rate, N type, N placement, organic amendment, tillage, irrigation) need to be the same between controls (zero N fertilizer input) and treatments (N fertilizer input), and (IV) we excluded data from the initial season of each study, because the plant residues from previous crop season are the same between zero N fertilizer input and N fertilizer input treatments, thereby focusing instead on the effect of sustained N fertilizer use. Finally, a total of 153 observations from 41 studies were included in our analysis.

For each observation, we tabulated the means of seasonal CH4 emissions and rice growth data (that is, total aboveground biomass or yield), and their standard deviation (SD) and replicates for both control and treatments. Missing SDs were estimated according to the mean coefficient of variation across our dataset. Climate, soil properties and experimental management may affect CH4 emissions from rice paddies, in turn regulating the impact of N additions. Thus, we also tabulated the corresponding factors from collected papers, i.e., mean annual temperature (°C), annual precipitation (mm), cropping system (single rice, rice-upland or double rice), experimental duration (yr), soil pH, soil organic carbon content (g kg-1), soil total N content (g kg-1), water regimes (continuous flooding or intermittent irrigation), rice cultivar (Indica or Japonica), organic management (i.e. organic matter input, yes or no), N fertilizer rate (kg N ha-1 season-1) and type (e.g. urea, controlled-released or ammonium N fertilizer).
DOI: 10.5281/zenodo.14037193
title: Data used to generate figures for Trossman et al. for Phil. Trans. A in 2024

description: These are .mat files for the first six figures of a manuscript intended for a special edition of Philosophical Transactions A and .data/.meta files in MITgcm format that can be read using rdmds.m for the seventh figure of the same manuscript.
DOI: 10.5281/zenodo.7363097
title: Dataset and Simulation Files for "Optomechanical microgear cavity"

description: Dataset and Simulation Files for "Optomechanical microgear cavity"
DOI: 10.6073/pasta/68296d816c9f4d8fe6e8bc3ed1668a5b
title: Vegetation classification, Andrews Experimental Forest and vicinity (1988,1993,1996,1997,2002, 2008)

description: This data set includes vegetation classifications from the Willamette National Forest (years 1993, 1996, 1997, 2002, and 2008) and from 1988 thematic mapper satellite image.
DOI: 10.6084/m9.figshare.24933876.v1
title: Analysis of internet Educational websites on tobacco cessation

description: Analysis of internet Educational websites on tobacco cessation: A Content Analysis
DOI: 10.6084/m9.figshare.25957564
title: Supplementary Material for: Identification of early events in serrated pathway colorectal tumorigenesis by using digital spatial profiling

description: Introduction: The colorectal serrated pathway involves precursor lesions known as sessile serrated lesions (SSL) and traditional serrated adenomas (TSA). Mutations in BRAF or KRAS are crucial early events in this pathway. Additional genetic and epigenetic changes contribute to the progression of these lesions into high-grade lesions and, eventually, invasive carcinoma. Methods: We employed digital spatial profiling to investigate the transcriptional changes associated with SSL and TSA. The genes identified are confirmed by immunohistochemical (IHC) staining. Colorectal (CRC) cell lines with CEACAM6 overexpression and knockdown were established to study the roles of CEACAM6 on tumorigenesis of CRC. Results: Ten genes were upregulated in SSL and TSA, and seven were upregulated in both types of lesions. IHC staining confirmed overexpression of CEACAM6, LCN2, KRT19, and lysozyme in SSL and TSA. CEACAM6 expression is an early event in the serrated pathway but a late event in the conventional pathway. Using cell line models, we confirmed that CEACAM6 promotes CRC cells' proliferation, migration, and invasion abilities. Conclusion: These results highlight that the transcriptional changes in the early stages of tumorigenesis exhibit relative uniformity. Identifying these early events may hold significant promise in elucidating the mechanisms behind tumor initiation.
DOI: 10.6084/m9.figshare.26926987.v1
title: Regulatory guidelines

description: These are reporting guidelines on how the qualitative study was done.
DOI: 10.6084/m9.figshare.27322458
title: Supplementary Material for: Efficacy and Safety of Upadacitinib Versus Dupilumab Treatment for Moderate to Severe Atopic Dermatitis in Four Body Regions: Analysis From the Heads-Up Study

description: Introduction: Upadacitinib has demonstrated high and rapid rates of efficacy in adolescent and adult patients with moderate-to-severe atopic dermatitis (AD) as assessed by the Eczema Area and Severity Index (EASI). This post hoc analysis assessed the EASI response in four anatomical regions for patients with moderate-to-severe AD treated with upadacitinib compared to dupilumab over 24 weeks.
Methods: Data from patients randomised 1:1 to receive upadacitinib 30 mg extended-release tablet orally once daily or dupilumab 300 mg by subcutaneous injection every 2 weeks after a loading dose of 600 mg in the Heads Up study were analysed for achievement of ≥75%, ≥90%, or 100% reduction of EASI in four body regions: 1) head and neck, 2) trunk (including genitals), 3) upper limbs, and 4) lower limbs (including buttocks) at each study visit through week 24. Patient response data from the Head and Neck Patient Global Impression of Severity (HN-PGIS) were also analysed at each study visit for comparison of upadacitinib to dupilumab.
Results: Greater proportions of patients treated with upadacitinib versus dupilumab achieved skin clearance rates of ≥75% (EASI 75) at week 1 and higher clearance rates of ≥90% (EASI 90) or 100% (EASI 100) by week 4 or earlier in all four body regions. This difference was maintained at each visit through week 24 for both EASI 90 and EASI 100. Patient responses on the HN-PGIS indicated that a greater proportion of patients (nominal p-value &lt;0.05) treated with upadacitinib compared to dupilumab reported that AD symptoms in the head and neck region were absent or minimal as early as week 1.
Conclusion: Compared to dupilumab, upadacitinib treatment provided higher rates of rapid, sustained efficacy for the head and neck, trunk, upper limbs, and lower limbs for the treatment of moderate-to-severe AD as measured by the EASI and supported by patient responses.
DOI: 10.15156/bio/786347
title: Full UNITE+INSD dataset for Fungi

description: This FASTA file ("UNITE+INSDC") comprises “all” fungal ITS sequences of the UNITE and INSDC databases, updated and released some four times a year. Locked UNITE sequences and low quality (and overly short) INSDC sequences are however excluded.
DOI: 10.5281/zenodo.11451701
title: Studying the scale selection of mixed Rossby-gravity waves: Idealized simulations with the TIGAR model

description: Mixed Rossby-gravity waves peak in two atmospheric regions in reanalysis: the upper troposphere and the upper stratosphere. The scales of MRG waves are different in these two regions, which can be seen e.g. on real-time MRG wave vertical profiles (https://modes.cen.uni-hamburg.de/products#MRG).  In order to understand the MRG wave scale selection in these regions, we run idealized simulations with the TIGAR model (Vasylkevych and Zagar, 2021) with a symmetric initial height perturbation with respect to the equator and zonal wind profiles derived from ERA5 reanalysis (Hersbach et al, 2020). In addition, we also run TIGAR simulations with symmetric initial height perturbation and idealized zonal jets centered at various latitudes.
DOI: 10.5281/zenodo.3549050
title: ESMA-3D Immersive Soundscape Recordings

description: ESMA3D (Equal Segment Microphone Array 3D) is a 3D mic array technique for 360° recording developed by Hyunkook Lee of the APL. It consists of 8 microphones arranged in a horizontally spaced, vertically coincident fashion. This provides a very good spaciousness and stable/accurate horizontal and vertical imaging as well as a realistic impression of being there and strong immersion. The main layer (mainly responsible for capture sound sources) is a 50cm x 50cm square of four cardioid microphones spaced with a 90° subtended angle between each pair of mics. The upper layer uses 4 supercardioid mics facing upwards for capturing ambience and elevated sources like birds. The lower and upper layers are coincident (0 spacing, but with a subtended angle of 90 to 120° to have enough level difference between the layers for stable vertical localisation). This design is based on our previous findings showing that vertical mic spacing has little or no contribution to spatial impression in 3D recording. The Schoeps ORTF3D is a brother/sister mic array sharing the same concept - horizontal spacing/vertical coincidence. The reproduction of ESMA3D requires the 8-channel Cube speaker array or 9.1 Dolby Atmos or Auro-3D setup (without the centre and sub), or it can be also binaurally or/and Ambisonically rendered, which still preserves a good quality if used with a good quality decoder, e.g. IEM plugin suite or Aalto SPARTA suite. More details about the array design and listening test results can be found in our AES papers below. http://www.aes.org/e-lib/browse.cfm?elib=19883 http://www.aes.org/e-lib/browse.cfm?elib=19401 http://www.aes.org/e-lib/browse.cfm?elib=17560 http://www.aes.org/e-lib/browse.cfm?elib=20392
DOI: 10.5281/zenodo.4750617
title: 20210512_JGRplanets_UranusMoonInduction

description: This dataset entails the Matlab .fig files containing the data illustrated in the draft manuscript submitted to JGR Planets on May 12, 2021, titled, "In Search of Subsurface Oceans within the Uranian Moons".
DOI: 10.5281/zenodo.8350256
title: DRAGEN files for HG002

description: This contains all the VCF (SNV for HG001-07 and SV, STR, CNV for HG002) files and targeted caller JSON file. All these files were generated from DRAGEN4.2 run with the GRCh38 reference genome.