cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5896396
title: Additional file 5: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Number of read starts for every position covered in S1 nuclease sample. (TXT 45980Â kb)
DOI: 10.6084/m9.figshare.5896396.v1
title: Additional file 5: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Number of read starts for every position covered in S1 nuclease sample. (TXT 45980Â kb)
DOI: 10.6084/m9.figshare.5896405
title: Additional file 6: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Total number of read starts for every position in both RNase V1 and S1 nuclease sample. (TXT 64960Â kb)
DOI: 10.6084/m9.figshare.5896405.v1
title: Additional file 6: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Total number of read starts for every position in both RNase V1 and S1 nuclease sample. (TXT 64960Â kb)
DOI: 10.6084/m9.figshare.5896417
title: Additional file 7: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Positions with ratio score more than one in V1 dataset. (TXT 15410Â kb)
DOI: 10.6084/m9.figshare.5896417.v1
title: Additional file 7: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Positions with ratio score more than one in V1 dataset. (TXT 15410Â kb)
DOI: 10.6084/m9.figshare.5896426
title: Additional file 8: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Positions with ratio score more than one in S1 dataset. (TXT 15865Â kb)
DOI: 10.6084/m9.figshare.5896426.v1
title: Additional file 8: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: Positions with ratio score more than one in S1 dataset. (TXT 15865Â kb)
DOI: 10.6084/m9.figshare.5896441
title: Additional file 9: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: PARS scores of 54,083 transcripts and non-coding RNAs. (TXT 35418Â kb)
DOI: 10.6084/m9.figshare.5896441.v1
title: Additional file 9: of RNA secondary structure profiling in zebrafish reveals unique regulatory features

description: PARS scores of 54,083 transcripts and non-coding RNAs. (TXT 35418Â kb)
DOI: 10.6084/m9.figshare.5896630
title: Molecular cloning and functional analysis of two novel polygalacturonase genes in <i>Rhizoctonia solani</i>

description: Two novel polygalacturonase (PG) genes, <i>RsPG3</i> and <i>RsPG4</i>, were cloned from <i>Rhizoctonia solani</i> isolate YN-7, which is a member of anastomosis group (AG) subgroup 1A and causes rice sheath blight. The predicted protein product of <i>RsPG3</i> contained 239 amino acid (aa) residues, with a molecular mass of 25.0 kD, whereas <i>RsPG4</i> encoded a deduced protein of 345 aa residues, with a mass of 37.5 kD. Sequence alignment, phylogenetic analysis and gene ontology indicated that RsPG3 and RsPG4 had endo-PG and exo-PG activity, respectively. Recombinant RsPG3 and RsPG4 both exhibited PG activity that led to the destruction of rice sheaths and release of reducing sugars. Pathogenicity assays showed that the two PGs induced tissue necrosis in rice sheaths, indicating that both RsPG3 and RsPG4 are important virulence factors in the <i>R. solani–</i>rice interaction. Further studies are underway to more clearly define the role of these enzymes in rice cell wall degradation and their interaction with PG inhibitor proteins.
DOI: 10.6084/m9.figshare.5896630.v1
title: Molecular cloning and functional analysis of two novel polygalacturonase genes in <i>Rhizoctonia solani</i>

description: Two novel polygalacturonase (PG) genes, <i>RsPG3</i> and <i>RsPG4</i>, were cloned from <i>Rhizoctonia solani</i> isolate YN-7, which is a member of anastomosis group (AG) subgroup 1A and causes rice sheath blight. The predicted protein product of <i>RsPG3</i> contained 239 amino acid (aa) residues, with a molecular mass of 25.0 kD, whereas <i>RsPG4</i> encoded a deduced protein of 345 aa residues, with a mass of 37.5 kD. Sequence alignment, phylogenetic analysis and gene ontology indicated that RsPG3 and RsPG4 had endo-PG and exo-PG activity, respectively. Recombinant RsPG3 and RsPG4 both exhibited PG activity that led to the destruction of rice sheaths and release of reducing sugars. Pathogenicity assays showed that the two PGs induced tissue necrosis in rice sheaths, indicating that both RsPG3 and RsPG4 are important virulence factors in the <i>R. solani–</i>rice interaction. Further studies are underway to more clearly define the role of these enzymes in rice cell wall degradation and their interaction with PG inhibitor proteins.
DOI: 10.6084/m9.figshare.25357131
title: Supplementary code from Predicting the responses of European grassland communities to climate and land cover change

description: This supplementary code includes 10 R scripts and one text file. Captions for all scripts are included in the text file "README.txt"
DOI: 10.6084/m9.figshare.25357131.v2
title: Supplementary code from Predicting the responses of European grassland communities to climate and land cover change

description: This supplementary code includes 10 R scripts and one text file. Captions for all scripts are included in the text file "README.txt"
DOI: 10.6084/m9.figshare.25357131.v1
title: Supplementary code from Predicting the responses of European grassland communities to climate and land cover change

description: This supplementary code includes 10 R scripts and one text file. Captions for all scripts are included in the text file "README.txt"
DOI: 10.5281/zenodo.10867400
title: Avian diversity study (water birds) of Kamarganti Bheries, Haroa, North 24 parganas, West Bengal, India during winter season

description: The Nature Mates Nature Club has released a dataset entitled "Avian diversity study (water birds) of Kamarganti Bheries, Haroa, North 24 parganas, West Bengal, India during winter season" 

Bheries are the type of fisheries generally practiced in low land impounded with earthen embankments all round.

The age-old bheri-culture has emerged in North 24 Parganas District in its south and eastern skirts centering the lower course of the Bidyadhari River. Salinity in bheri-water is sourced from brackish sea-water entered through rivers and canals..

The district has 22 community development (CD) blocks, though brackish water bheri fishery is usually found to exist in its 13 blocks in the south and eastern skirts.

This dataset is concerned with one such area, Kamarganti,Haroa,North 24 Parganas.

A list of all the birds identified during a biodiversity survey carried out in the year 2023 is included in the dataset. During the survey Red Necked Phalarope (Phalaropus lobatus)  was recorded which is a very rare bird in West Bengal.

Species or genus-level identifications have been made for every species. There are 42 bird  species total, with records of them in 16 different families and 10 different orders.

This study can give a future scope in understanding how bheries affect the biodiversity of an area.

Resource Contacts

Name: Arjan Basu Roy

Position: Secretary

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: basuroyarjan@gmail.com

Orcid : https://orcid.org/0000-0001-9872-3562

Home page: http://www.naturematesindia.org/

 

Name: Lina Chatterjee

Position: Research Associate

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: lina.linachatterjee@gmail.com

Orcid : https://orcid.org/0000-0002-5626-5046

Home page: http://www.naturematesindia.org/

Name: Tarak Samanta

Position: Research Associate

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: taraksamanta995@gmail.com

Orcid : https://orcid.org/0000-0001-6809-0549

Home page: http://www.naturematesindia.org/

 

Name: Nivedita Sengupta

Position: Intern

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: niveditasngpta.ns@gmail.com

Orcid : https://orcid.org/0000-0003-1085-7385

Home page: http://www.naturematesindia.org/

 

Name: Vijay Barve

Position: Research Advisor

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: vijay.barve@gmail.com

Orcid : https://orcid.org/0000-0002-4852-2567

Home page: http://www.naturematesindia.org/
DOI: 10.5281/zenodo.10867401
title: Avian diversity study (water birds) of Kamarganti Bheries, Haroa, North 24 parganas, West Bengal, India during winter season

description: The Nature Mates Nature Club has released a dataset entitled "Avian diversity study (water birds) of Kamarganti Bheries, Haroa, North 24 parganas, West Bengal, India during winter season" 

Bheries are the type of fisheries generally practiced in low land impounded with earthen embankments all round.

The age-old bheri-culture has emerged in North 24 Parganas District in its south and eastern skirts centering the lower course of the Bidyadhari River. Salinity in bheri-water is sourced from brackish sea-water entered through rivers and canals..

The district has 22 community development (CD) blocks, though brackish water bheri fishery is usually found to exist in its 13 blocks in the south and eastern skirts.

This dataset is concerned with one such area, Kamarganti,Haroa,North 24 Parganas.

A list of all the birds identified during a biodiversity survey carried out in the year 2023 is included in the dataset. During the survey Red Necked Phalarope (Phalaropus lobatus)  was recorded which is a very rare bird in West Bengal.

Species or genus-level identifications have been made for every species. There are 42 bird  species total, with records of them in 16 different families and 10 different orders.

This study can give a future scope in understanding how bheries affect the biodiversity of an area.

Resource Contacts

Name: Arjan Basu Roy

Position: Secretary

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: basuroyarjan@gmail.com

Orcid : https://orcid.org/0000-0001-9872-3562

Home page: http://www.naturematesindia.org/

 

Name: Lina Chatterjee

Position: Research Associate

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: lina.linachatterjee@gmail.com

Orcid : https://orcid.org/0000-0002-5626-5046

Home page: http://www.naturematesindia.org/

Name: Tarak Samanta

Position: Research Associate

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: taraksamanta995@gmail.com

Orcid : https://orcid.org/0000-0001-6809-0549

Home page: http://www.naturematesindia.org/

 

Name: Nivedita Sengupta

Position: Intern

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: niveditasngpta.ns@gmail.com

Orcid : https://orcid.org/0000-0003-1085-7385

Home page: http://www.naturematesindia.org/

 

Name: Vijay Barve

Position: Research Advisor

Organization: Nature Mates-Nature Club

Address: 6/7 Bijoygarh Kolkata-700032

Email: vijay.barve@gmail.com

Orcid : https://orcid.org/0000-0002-4852-2567

Home page: http://www.naturematesindia.org/
DOI: 10.6084/m9.figshare.5899780
title: MOESM1 of Whole exome sequencing reveals novel somatic alterations in neuroblastoma patients with chemotherapy

description: Additional file 1. Original data of 27 NB patients of clinical features and NGS results.
DOI: 10.6084/m9.figshare.5899780.v1
title: MOESM1 of Whole exome sequencing reveals novel somatic alterations in neuroblastoma patients with chemotherapy

description: Additional file 1. Original data of 27 NB patients of clinical features and NGS results.
DOI: 10.6084/m9.figshare.5899843
title: Additional file 1: of Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice

description: Table S2. Genotype of three P/TGMS genes by PCR-based sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5899843.v1
title: Additional file 1: of Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice

description: Table S2. Genotype of three P/TGMS genes by PCR-based sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5899861
title: Additional file 2: of Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice

description: Table S1. Primers sequence used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5899861.v1
title: Additional file 2: of Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice

description: Table S1. Primers sequence used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5899885
title: Additional file 2: of Effects of a wide range of dietary forage-to-concentrate ratios on nutrient utilization and hepatic transcriptional profiles in limit-fed Holstein heifers

description: Table S4. Differentially expressed genes among treatments. (XLSX 76 KB)
DOI: 10.6084/m9.figshare.5899885.v1
title: Additional file 2: of Effects of a wide range of dietary forage-to-concentrate ratios on nutrient utilization and hepatic transcriptional profiles in limit-fed Holstein heifers

description: Table S4. Differentially expressed genes among treatments. (XLSX 76 KB)
DOI: 10.6084/m9.figshare.5899993
title: Additional file 1: of The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

description: Table S1. Genomic annotations and classifications of HRGPs in pear. SP refers to signal peptide; GPI refers to glycosylphosphatidylinositol. Table S2. The transcription factor shared by HRGP gene pairs from WGD event. Table S3. The comparison of searching strategy between our method and the method previously reported. Table S4. Primers for HRGPs in qRT-PCR. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.5899993.v1
title: Additional file 1: of The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

description: Table S1. Genomic annotations and classifications of HRGPs in pear. SP refers to signal peptide; GPI refers to glycosylphosphatidylinositol. Table S2. The transcription factor shared by HRGP gene pairs from WGD event. Table S3. The comparison of searching strategy between our method and the method previously reported. Table S4. Primers for HRGPs in qRT-PCR. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.5900626
title: Additional file 1: of Disruption of ETV6 leads to TWIST1-dependent progression and resistance to epidermal growth factor receptor tyrosine kinase inhibitors in prostate cancer

description: Figure Legends and Tables. (ZIP 1350 kb)
DOI: 10.6084/m9.figshare.5900626.v1
title: Additional file 1: of Disruption of ETV6 leads to TWIST1-dependent progression and resistance to epidermal growth factor receptor tyrosine kinase inhibitors in prostate cancer

description: Figure Legends and Tables. (ZIP 1350 kb)
DOI: 10.6084/m9.figshare.5900656
title: Additional file 2: of Molecular subtyping of nasopharyngeal carcinoma (NPC) and a microRNA-based prognostic model for distant metastasis

description: Table S1. Subtype target gene list. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.5900656.v1
title: Additional file 2: of Molecular subtyping of nasopharyngeal carcinoma (NPC) and a microRNA-based prognostic model for distant metastasis

description: Table S1. Subtype target gene list. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.5900677
title: Additional file 3: of Molecular subtyping of nasopharyngeal carcinoma (NPC) and a microRNA-based prognostic model for distant metastasis

description: Table S2. Subtype enriched pathways. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.5900677.v1
title: Additional file 3: of Molecular subtyping of nasopharyngeal carcinoma (NPC) and a microRNA-based prognostic model for distant metastasis

description: Table S2. Subtype enriched pathways. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.5903023
title: Additional file 1: Table S1. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Pearsonâ s correlation coefficients between phenotypic traits in different environments. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5903023.v1
title: Additional file 1: Table S1. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Pearsonâ s correlation coefficients between phenotypic traits in different environments. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5903035
title: Additional file 2: Table S2. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Descriptive statistics (Means Âą SD) of six phenotypic traits in three founder parents and their derivatives in different environments. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5903035.v1
title: Additional file 2: Table S2. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Descriptive statistics (Means Âą SD) of six phenotypic traits in three founder parents and their derivatives in different environments. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5903050
title: Additional file 3: Table S3. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Allelic number, MAF and PIC of 3792 SNP markers detected in this study. (XLSX 304Â kb)
DOI: 10.6084/m9.figshare.5903050.v1
title: Additional file 3: Table S3. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Allelic number, MAF and PIC of 3792 SNP markers detected in this study. (XLSX 304Â kb)
DOI: 10.6084/m9.figshare.5903062
title: Additional file 4: Table S4. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Information for 215 wheat accessions used in this study. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5903062.v1
title: Additional file 4: Table S4. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Information for 215 wheat accessions used in this study. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5903080
title: Additional file 5: Table S5. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Significant MTAs identified in current and previous study. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5903080.v1
title: Additional file 5: Table S5. of Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

description: Significant MTAs identified in current and previous study. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5903269
title: Additional file 12: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S3. List of low-abundance and sporulation-specific genes used in this study. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.5903269.v1
title: Additional file 12: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S3. List of low-abundance and sporulation-specific genes used in this study. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.5903278
title: Additional file 13: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S4. List of minor modification genes for cell wall proteins used in this study. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5903278.v1
title: Additional file 13: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S4. List of minor modification genes for cell wall proteins used in this study. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5903305
title: Additional file 2: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S1. Holistic morphological abnormalities, specific morphological abnormalities, and fitness defects of non-essential gene mutants. (XLS 1168Â kb)
DOI: 10.6084/m9.figshare.5903305.v1
title: Additional file 2: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S1. Holistic morphological abnormalities, specific morphological abnormalities, and fitness defects of non-essential gene mutants. (XLS 1168Â kb)
DOI: 10.6084/m9.figshare.5903323
title: Additional file 4: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S2. Holistic morphological abnormalities and genotypes of 19 non-essential gene mutants during validation analysis. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.5903323.v1
title: Additional file 4: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

description: Table S2. Holistic morphological abnormalities and genotypes of 19 non-essential gene mutants during validation analysis. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.5904055
title: S1_Water Hyacinth Spatio-Temporal Model

description: See S1_README.txt for instructions regarding running the water hyacinth spatio-temporal model.<br>See S1_data_7.R and S1_maincode_1.R for spatio-temporal model code.<br>See S1_support.zip for raw data (calibration data), and ESRI GIS files.
DOI: 10.6084/m9.figshare.5907535
title: Thermal Properties and Kinetics of Al/α-MnO2 Nanostructure Thermite

description: In this work, thermal properties and kinetics of Al-nanoparticles/α-MnO2 nanorods thermite were reported. The α-MnO2 nanorods were synthesized using a hydrothermal method and were characterized by X-ray powder diffraction (XRD) and X-ray photoelectron spectra (XPS), then combined with Al nanoparticles based on the ultrasonic mixing method to prepare the nanostructure thermite. Besides, both pure components and mixture were characterized by field emission scanning electron microscopy (FE-SEM) to observe their morphologies and structures. Subsequently, the thermal properties of Al/α-MnO2 nanostructure thermite were studied on the basis of thermogravimetric-differential scanning calorimetry (TG-DSC). According to the TG-DSC tests, the calculation results of activation energy for kinetics of Al/α-MnO2 thermite were obtained using different isoconversional methods. It was found that Al/α-MnO2 nanostructure thermite has high heat release and low onset temperature, and the heat release of the nanostructure thermite was approximately 1146.6 J g -1.
DOI: 10.6084/m9.figshare.5907535.v1
title: Thermal Properties and Kinetics of Al/α-MnO2 Nanostructure Thermite

description: In this work, thermal properties and kinetics of Al-nanoparticles/α-MnO2 nanorods thermite were reported. The α-MnO2 nanorods were synthesized using a hydrothermal method and were characterized by X-ray powder diffraction (XRD) and X-ray photoelectron spectra (XPS), then combined with Al nanoparticles based on the ultrasonic mixing method to prepare the nanostructure thermite. Besides, both pure components and mixture were characterized by field emission scanning electron microscopy (FE-SEM) to observe their morphologies and structures. Subsequently, the thermal properties of Al/α-MnO2 nanostructure thermite were studied on the basis of thermogravimetric-differential scanning calorimetry (TG-DSC). According to the TG-DSC tests, the calculation results of activation energy for kinetics of Al/α-MnO2 thermite were obtained using different isoconversional methods. It was found that Al/α-MnO2 nanostructure thermite has high heat release and low onset temperature, and the heat release of the nanostructure thermite was approximately 1146.6 J g -1.