cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7b5p01b
title: Data from: Dietary protein and carbohydrates affect immune function and performance in a specialist herbivore insect (Manduca sexta)

description: Nutrition structures ecology and evolution across all scales of biological
 organization. It is well known that nutrition can have direct effects on
 performance and fitness, but indirect effects on physiological systems
 that mediate biotic interactions have been studied less frequently. Here,
 we focus on the interaction between nutrition, performance, and the immune
 system in a specialist herbivorous insect, Manduca sexta. We used a
 conceptual framework in nutritional ecology (the geometric framework) to
 examine how changes in diet quality affect aspects of the immune system
 used for defense against parasitoids. We raised caterpillars throughout
 their entire larval development on five different experimental diets that
 varied in protein and carbohydrate content and measured five aspects of
 the immune system: encapsulation, phenoloxidase activity, prophenoloxidase
 activity, total hemolymph protein, and hemocyte density. Overall,
 different parts of the immune function varied in response to interactions
 between carbohydrates, protein, and intake, but protein reductions had the
 largest impacts—mostly detrimental. In addition, our data suggest that
 diet quality mediates the relationship between performance (growth and
 survival) and immune function, as well as trade-offs among different
 components of immune function. Our work is the first to examine the
 interplay between nutrition, performance, and immune function with the
 geometric framework in a specialist insect herbivore.
description: Manduca Diet
 CodeCode to generate figures
 and analysesManducaDietCode.RManduca Master LongData called by R script.ManducaMasterLong.xlsx
DOI: 10.5061/dryad.rm0q2
title: Data from: A comparative study of insect abundance and reproductive success of barn swallows Hirundo rustica in two urban habitats

description: Few studies have quantified the relative reproductive success of
 passerines in urban habitats. I studied food availability and reproductive
 success of barn swallows Hirundo rustica in two urban habitats during
 2012–2015. Barn swallows breeding in the town center experienced lower
 insect densities than those in the town periphery. Lower food availability
 resulted in reduced feeding rates per capita, lower nestling body mass,
 longer nestling periods, longer inter-clutch intervals, fewer first and
 second brood fledglings and a lower total number of fledglings produced
 during the breeding season in comparison to barn swallows breeding in the
 town periphery. I hypothesize that the lower intra-specific competition
 for nest sites and fitness advantages linked to the solitary breeding in
 urban habitats balanced the apparent costs of reproduction in more
 urbanized habitats.
description: Kopi af Alle Ungevægt by
 og periferi - 1 og 2 kuld - september 2015 - rev 251215Data on chick mass (town
 and town periphery)Kopi af Kopi af Alle
 data vedr fordringer pr time og insekttæthed - september
 15Feeding rates and insect
 countsLandsvale data
 2012-2015- Analyser jan 2016 - Peter TeglhøjReproductive data
 2012-2015
DOI: 10.5281/zenodo.18382634
title: Cross-Architecture Quantum Teleportation via Hyperelliptic Curve Topology: Experimental Demonstration on Commercial QPUs
title: Cross-Architecture Quantum Teleportation via Hyperelliptic Curve Topology: Experimental Demonstration on Commercial QPUs

description: We report the first successful quantum tele-portation protocol between heterogeneousquantum processing units (QPUs) usingalgebraic-geometric structure as the entan-glement modulation framework. A 5-qubitquantum state was teleported from RigettiComputing’s Ankaa-3 superconducting QPUto IQM Quantum Computers’ Emerald su-perconducting QPU, achieving 80% bit-levelfidelity using only classical communicationchannels. The protocol employs eigen-phases extracted from the period matrix ofgenus-2 hyperelliptic curves to encode quan-tum correlation structure in a hardware-agnostic manner. Our implementation uti-lizes a novel database-coordinated classi-cal channel for Bell measurement trans-mission, demonstrating that standard dis-tributed systems infrastructure can supportquantum networking protocols. The observed∗Independent researcher. Correspondence:github.com/shemshallahfidelity without quantum error correction,combined with the protocol’s architecture-independence, provides strong evidence thattopological encoding offers robustness ad-vantages for distributed quantum comput-ing. We present comprehensive experimen-tal data, theoretical analysis, and a scal-able framework for heterogeneous quantumnetwork construction. Our results establishproof-of-concept for topology-mediated quan-tum communication and suggest pathwaystoward practical quantum internet implemen-tation
DOI: 10.5281/zenodo.18382635
title: Cross-Architecture Quantum Teleportation via Hyperelliptic Curve Topology: Experimental Demonstration on Commercial QPUs
title: Cross-Architecture Quantum Teleportation via Hyperelliptic Curve Topology: Experimental Demonstration on Commercial QPUs

description: We report the first successful quantum tele-portation protocol between heterogeneousquantum processing units (QPUs) usingalgebraic-geometric structure as the entan-glement modulation framework. A 5-qubitquantum state was teleported from RigettiComputing’s Ankaa-3 superconducting QPUto IQM Quantum Computers’ Emerald su-perconducting QPU, achieving 80% bit-levelfidelity using only classical communicationchannels. The protocol employs eigen-phases extracted from the period matrix ofgenus-2 hyperelliptic curves to encode quan-tum correlation structure in a hardware-agnostic manner. Our implementation uti-lizes a novel database-coordinated classi-cal channel for Bell measurement trans-mission, demonstrating that standard dis-tributed systems infrastructure can supportquantum networking protocols. The observed∗Independent researcher. Correspondence:github.com/shemshallahfidelity without quantum error correction,combined with the protocol’s architecture-independence, provides strong evidence thattopological encoding offers robustness ad-vantages for distributed quantum comput-ing. We present comprehensive experimen-tal data, theoretical analysis, and a scal-able framework for heterogeneous quantumnetwork construction. Our results establishproof-of-concept for topology-mediated quan-tum communication and suggest pathwaystoward practical quantum internet implemen-tation
DOI: 10.5061/dryad.c89g9
title: Data from: Smart nest box: a tool and methodology for monitoring of cavity-dwelling animals

description: 1.Camera recording and video analysis have emerged as a successful
 non-invasive method for collecting a wide range of biological data on many
 different taxa of animals. However, camera monitoring has rarely been
 applied to long term surveillance of cavity or box-nesting species and
 ordinary off-the-shelf cameras are employed. 2.We present methodology and
 data on the effectiveness of nest box monitoring using a camera system
 embedded in four “smart nest boxes” (SNBoxes). We applied the SNBoxes to
 eight Tengmalm's owl (Aegolius funereus) nests in the Czech Republic
 during a five-month period in 2014. Each SNBox consisted of a pair of
 cameras with infrared lighting, an event detector, a radio-frequency
 identification reader, auxiliary sensors, and a 60 Ah 12 V battery to
 power the whole system. All devices used were centrally managed by an
 embedded computer with specifically developed software. 3.Using four
 SNBoxes, we observed owl nesting continually during the incubation,
 nestling, and fledgling phases, in total 309 days, resulting in 3382 owl
 video events. Batteries were changed every 6.5 days. A memory of 4 GB was
 found sufficient to store monthly data. We identified 12 types of male and
 female parental activities and their timing, the diet composition and
 frequency of prey delivery, the manner of prey storage, the light
 intensity at the time of each parental activity, the temperature inside
 the clutch and outside the box, and the duration of nestling period of
 each young. We also produced a video on owl nesting for the general
 public. 4.The SNBox and related methodology show enormous potential as a
 non-invasive tool for monitoring animals using boxes or natural cavities.
 The main advantage of the SNBox is the possibility to study both nocturnal
 and diurnal animal species and great flexibility in use of the software
 and hardware for different tasks. As a result, the SNBox provides an
 opportunity for novel insights into the breeding, roosting, hibernating,
 and food storage activities of a wide range of cavity-living birds,
 mammals, and reptiles.
description: Data for statistical
 analysesWe present row data used
 for statistical analyses: i) the effect of the nestling age on parental
 activities of owls, ii) the effect of intra-seasonal variability in sunset
 and sunrise timing on timing of owl activities, iii) the effect of month
 (April-July) on light intensity at time of owl activities, iv) the effect
 of outdoor temperature on time spent by owl female outside the nest, and
 v) the effect of the night length on voltage decrease of
 battery.Data.xlsx
DOI: 10.5061/dryad.sf40c
title: Data from: Bioacoustics reveals two new syntopic species of Adenomera Steindachner (Anura: Leptodactylidae: Leptodactylinae) in the Cerrado of central Brazil

description: In this paper, we describe two syntopic species of Adenomera from the
 Chapada dos Veadeiros microregion, northern State of Goiás, central
 Brazil, recognized based on morphology, color patterns, and bioacoustics.
 Specimens and calls were obtained in the Municipality of Teresina de
 Goiás, central Brazil. Adenomera cotuba sp. nov. is diagnosed from the
 other 16 congeneric species by its 1) small size (adult male SVL 18.6–20.5
 mm) and very robust body; 2) dorsum glandular/granular with no distinctive
 dorsal granular rows or dorsolateral folds; 3) black or very dark dorsal
 coloration with no distinctive color patterns (e.g., dorsolateral or
 vertebral stripes); 4) toe tips not developed into flattened disks; 5)
 presence of antebrachial tubercle; and 6) advertisement call consisting of
 a well-defined series of pulsed calls (7–32 calls/series) with progressive
 increment in amplitude in the first third of each call series when it
 reaches a sustained plateau. Adenomera juikitam sp. nov. is diagnosed from
 the other 16 congeneric species by its 1) dorsum profusely
 glandular/granular with no distinctive dorsal granular rows or
 dorsolateral folds; 2) dorsum with a marble-like and red coloration with
 no distinctive color patterns (e.g., dorsolateral or vertebral stripes);
 3) toe tips not developed into flattened disks; 4) small size (adult male
 SVL 19.1–19.5 mm) and very robust body; and 5) long (148–202 ms)
 advertisement call composed of 16–21pulses. Both new taxa occur in
 syntopy, and our data allow us to differentiate them both in temporal
 (pulses/call) and spectral (frequency peaks) traits of their advertisement
 calls. Besides, dorsal coloration is distinctive, Adenomera cotuba sp.
 nov. has a black or very dark-colored dorsum, whereas Adenomera juikitam
 sp. nov. has a marble-like and red-colored dorsum, in addition to the
 presence (A. cotuba sp. nov.) or absence (A. juikitam sp. nov.) of
 antebrachial tubercle.
description: Morphometric data of two
 new species of Adenomera from central BrazilThese data correspond to
 the individual values summarized in Table 1 of our study through mean,
 standard deviation, and range. Measurement abbreviations are according to
 those presented in Material and Methods section.Acoustic data for
 Adenomera sp.1 nov.Individual values for
 Adenomera sp.1 nov. call traits, summarized in Table 2 of our study
 through individual mean values, their corresponding standard deviations,
 and range of values.Acoustic data for
 Adenomera sp.2 nov.Individual values for
 Adenomera sp.2 nov. call traits, summarized in Table 3 of our study
 through individual mean values, their corresponding standard deviations,
 and range of values.
DOI: 10.5061/dryad.s489b
title: Data from: Replicate divergence between and within sounds in a marine fish: the copper rockfish (Sebastes caurinus)

description: The evolution of population structure in marine organisms and its
 relevance to conservation has recently received increasing attention. We
 tested the degree of genetic subdivision among ten populations of copper
 rockfish (Sebastes caurinus) representing paired samples of outer coast
 and the heads of five replicate sounds on the west coast of Vancouver
 Island, British Columbia using 17 microsatellite DNA loci. Overall,
 subdivision (FST) was low (FST = 0.031), but consistently higher between
 paired coast and head of inlet sites (mean FST = 0.047) compared to among
 five coast sites (mean FST = -0.001) or among the five head of inlet sites
 (mean FST = 0.026). Heterozygosity, allelic richness, and estimates of
 effective population size were also consistently lower in head of inlet
 sites than in coast sites. Bayesian analysis of population structure
 identified two genetic groups across all samples, a single genetic group
 amongst only coast samples, two genetic groups amongst head of inlet
 samples, and two genetic groups within each sound analysed separately.
 Head of inlet copper rockfish were also consistently shorter with lower
 condition factors, and grew more slowly than fish collected from coast
 sites. Our results implicate coast- head of inlet habitat transitions in
 driving the evolution of population structure, likely resulting from
 reduced physical connectivity and selection against immigrants in
 contrasting environments. Coast sites appear to be well served by existing
 marine protected areas. By contrast, head of inlet sites may require more
 specific local conservation measures as they appear to be less well
 connected to adjacent coast sites as well as to each other.
description: copperdataMicrosatellite DNA allele frequencies at 17 loci. Data are in base pairs and in CONVERT format
DOI: 10.5061/dryad.v565c
title: Data from: Pollination, mating and reproductive fitness in a plant population with bimodal floral-tube length

description: Mating patterns and natural selection play important roles in determining
 whether genetic polymorphisms are maintained or lost. Here, we document an
 atypical population of Lapeirousia anceps (Iridaceae) with a bimodal
 distribution of floral-tube length and investigate the reproductive
 mechanisms associated with this pattern of variation. Flowers were visited
 exclusively by the long-proboscid fly Moegistorhynchus longirostris
 (Nemestrinidae), which exhibited a unimodal distribution of proboscis
 length and displayed a preference for long-tubed phenotypes. Despite being
 visited by a single pollinator species, allozyme markers revealed
 significant genetic differentiation between open-pollinated progeny of
 long- and short-tubed phenotypes suggesting mating barriers between them.
 We obtained direct evidence for mating barriers between the floral-tube
 phenotypes through observations of pollinator foraging, controlled hand
 pollinations and measurements of pollen competition and seed set.
 Intermediate tube-length phenotypes produced fewer seeds in the field than
 either long- or short-tubed phenotypes. Although floral-tube length
 bimodality may not be a stable state over long timescales, reproductive
 barriers to mating and low ‘hybrid’ fitness have the potential to
 contribute to the maintenance of this state in the short term.
description: L. anceps: autonomous
 selfing and tube lengthThese data show how
 autonomous seed production varies with tube length in L.
 ancepsdryad
 selfing.xlsxTube and tongue length
 variationThese data show tube
 length variability of L. anceps flowers and tongue length variability of
 M. longirostris pollinatorsdryad tube and tongue length
 variation.xlsxdryad visit
 sequencessequence of visitation
 between short and long tube phenotype flowers in a L. anceps population.
 Visits were made by is M. longirostris fliesdryad cross
 compatibilityseed set after crosses
 within and between short and long tubed phenotypes of L.
 ancepstube variation and
 natural seed setData show how natural
 seed production varies with tube length of L.ancepsdryad tube variation and seed
 set.xlsxnectar variation with
 tube lengthData shows now nectar
 concentration and volume varies with floral tube length of L.
 ancepsdryad
 nectar variation with tube length.xlsx
DOI: 10.5061/dryad.1g98b
title: Data from: Mitochondrial lineage sorting in action – historical biogeography of the Hyles euphorbiae complex (Sphingidae, Lepidoptera) in Italy

description: Background: Mitochondrial genes are among the most commonly used markers
 in studies of species’ phylogeography and to draw conclusions about
 taxonomy. The Hyles euphorbiae complex (HEC) comprises six distinct
 mitochondrial lineages in the Mediterranean region, of which one exhibits
 a cryptic disjunct distribution. The predominant mitochondrial lineage in
 most of Europe, euphorbiae, is also present on Malta; however, it is
 nowadays strangely absent from Southern Italy and Sicily, where it is
 replaced by 'italica'. A separate biological entity in Italy is
 further corroborated by larval colour patterns with a congruent, confined
 suture zone along the Northern Apennines. By means of historic DNA
 extracted from museum specimens, we aimed to investigate the evolution of
 the mitochondrial demographic structure of the HEC in Italy and Malta
 throughout the Twentieth Century. Results: At the beginning of the
 Twentieth Century, the European mainland lineages were also present at a
 moderate frequency in Southern Italy and Sicily. The proportion of
 'italica' then steadily increased in this area from below 60
 percent to near fixation in about 120 years. Thus, geographical sorting of
 mitochondrial lineages in the HEC was not as complete then as the current
 demography suggests. The pattern of an integral 'italica' core
 region and a disjunct euphorbiae distribution evolved very recently. To
 explain these strong demographic changes, we propose genetic drift due to
 anthropogenic habitat loss and fragmentation in combination with an impact
 from recent climate warming that favoured the spreading of the potentially
 better adapted 'italica' populations. Conclusions: The pattern
 of geographically separated mitochondrial lineages is commonly interpreted
 as representing long term separated entities. However, our results
 indicate that such a pattern can emerge surprisingly quickly, even in a
 widespread and rather common taxon. We thus caution against drawing hasty
 taxonomic conclusions from biogeographical patterns of mitochondrial
 markers derived from modern sampling alone.
description: MendeHundsdoerfer2013BMCEvolBiol_HEC_historicDNA_alignmentAlignment of three fragments of mitochondrial COI/II gene sequences from historical specimens of the Hyles euphorbiae complex s.s. (HEC; Sphingidae, Lepidoptera) from Italia and Malta.
DOI: 10.5061/dryad.8kb87
title: Data from: Direct and indirect causal effects of heterozygosity on fitness-related traits in Alpine ibex

description: Heterozygosity–fitness correlations (HFCs) are a useful tool to
 investigate the effects of inbreeding in wild populations, but are not
 informative in distinguishing between direct and indirect effects of
 heterozygosity on fitness-related traits. We tested HFCs in male Alpine
 ibex (Capra ibex) in a free-ranging population (which suffered a severe
 bottleneck at the end of the eighteenth century) and used confirmatory
 path analysis to disentangle the causal relationships between
 heterozygosity and fitness-related traits. We tested HFCs in 149 male
 individuals born between 1985 and 2009. We found that standardized
 multi-locus heterozygosity (MLH), calculated from 37 microsatellite loci,
 was related to body mass and horn growth, which are known to be important
 fitness-related traits, and to faecal egg counts (FECs) of nematode eggs,
 a proxy of parasite resistance. Then, using confirmatory path analysis, we
 were able to show that the effect of MLH on horn growth was not direct but
 mediated by body mass and FEC. HFCs do not necessarily imply direct
 genetic effects on fitness-related traits, which instead can be mediated
 by other traits in complex and unexpected ways.
description: MLH and fitness-related
 traits in Alpine ibexHFC_2013_standardizzato.txt
DOI: 10.5281/zenodo.17471460
title: Updated: The Dataset and Code For the Analysis of Shang Dynasty Bronze Vessel Patterns  (v3.0)

description: Version 3.0



This release simplifies and standardizes the original code and adds analyses of community significance and stability in the network.


Version 2.0



This release includes modifications to the directory structure and corresponding code to improve adaptability across different computing environments.


The data and code supporting the study for the article " The Connection of Bronze Vessel Patterns: Revealing Cultural Exchange in the Late Shang Dynasty Based on the Similarity Network"

This dataset and code enable deep learning-based type prediction of Shang dynasty bronze vessel motifs and facilitate the extraction of feature vectors for similarity analysis. For detailed usage instructions, please refer to the README file in the root directory.

Note: Due to the algorithmic nature of deep learning, your results may not exactly match the provided data. However, in subsequent algorithms, you can obtain highly similar data relationships. The purpose of this method is to uncover patterns underlying the data, and the interpretation of results should be approached with appropriate nuance.
DOI: 10.5281/zenodo.18375244
title: Updated: The Dataset and Code For the Analysis of Shang Dynasty Bronze Vessel Patterns  (v3.0)

description: Version 3.0



This release simplifies and standardizes the original code and adds analyses of community significance and stability in the network.


Version 2.0



This release includes modifications to the directory structure and corresponding code to improve adaptability across different computing environments.


The data and code supporting the study for the article " The Connection of Bronze Vessel Patterns: Revealing Cultural Exchange in the Late Shang Dynasty Based on the Similarity Network"

This dataset and code enable deep learning-based type prediction of Shang dynasty bronze vessel motifs and facilitate the extraction of feature vectors for similarity analysis. For detailed usage instructions, please refer to the README file in the root directory.

Note: Due to the algorithmic nature of deep learning, your results may not exactly match the provided data. However, in subsequent algorithms, you can obtain highly similar data relationships. The purpose of this method is to uncover patterns underlying the data, and the interpretation of results should be approached with appropriate nuance.