cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fbq2p6
title: Occurrence Download

description: A dataset containing 25303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azolla filiculoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-27.50298 21.28126, -26.43695 20.42046, -25.1287 19.94015, -23.6919 19.88185, -22.25048 20.2511, 38.59129 21.65886, 40.05275 21.35526, 41.49861 21.47933, 42.80482 22.01995, 43.85759 22.93039, 44.55982 24.13112, 76.4422 55.66586, 78.30868 56.53368, 79.62115 57.65488, 80.22432 58.94387, 79.98464 60.29035, 78.8192 61.56215, -62.74691 58.43671, -63.73428 57.13646, -63.88319 55.78588, -63.26559 54.51539, -61.99922 53.43331, -60.22441 52.62263, -28.2297 22.44742, -27.50298 21.28126))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 25303 records from 374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049126-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7807/microm:kaufkraft:suf:v5:1
title: Socio-economic data on grid level (SUF 5.1). Pruchasing power
title: Sozioökonomische Daten auf Rasterebene (SUF 5.1). Kaufkraft

description: The purchasing power reflects the household income.  It comprises information on labour supply, capital wealth, rental and leasing income minus taxes and social security contributions, including social transfers such as unemployment benefits, child-allowances and pensions. Regular payments, e.g. for rent, electricity or insurance premiums are not subtracted from the purchasing power. Microm computes the purchasing power in cooperation with Michael Bauer Research GmbH. The computation is based on statistical models on a small regional scale. This allows for small-scale purchasing power information on the street segment and postcode (PLZ8) level. As explanatory variables for the econometric models, many microm variables are used, such as typology, age, status and the car variables. Due to persistent differences between East and West Germany, the purchasing power was modelled separately for both parts (microm 2016, p. 106).
description: Die Kaufkraft spiegelt das Haushaltsnettoeinkommen wider. Sie beinhaltet alle Einkünfte aus Arbeit, Kapitalvermögen, Vermietung und Verpachtung nach Abzug von Steuern und Sozialabgaben, jedoch zzgl. Transferleistungen wie Arbeitslosen-, Kindergeld oder Renten. Regelmäßige Zahlungen für z.B. Miete, Strom oder Beiträge für Versicherungen sind nicht abgezogen und demnach noch in der Kaufkraft enthalten. Microm berechnet in Kooperation mit der Michael Bauer Research GmbH die Kaufkraft mittels statistischer Modelle auf kleinräumiger Ebene. Dies ermöglicht es, Aussagen zur Kaufkraft auf Straßenabschnitts-  bzw. PLZ8- Ebne zu treffen.  Ausgangspunkt der Berechnung ist die Kaufkraft auf Gemeinde- und PLZ- Ebene. Zur Berechnung der Kaufkraft auf kleinräumiger Ebene werden verschiedene erklärende Variablen des microm Portfolios herangezogen, wie beispielsweise microm Typologie, Alter, Status und PKW Variablen. Zudem wird die Berechnung der Kaufkraft für die Alten und Neuen Bundesländer getrennt voneinander vorgenommen, da bis heute erhebliche Unterschiede in der Kaufkraft dieser Regionen bestehen (microm 2016, S. 106).
description: RWI-GEO-GRID
description: RWI-GEO-GRID
DOI: 10.15468/dl.bsqbbr
title: Occurrence Download

description: A dataset containing 108557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leonurus japonicus, Rehmannia glutinosa, Chrysanthemum indicum, Lonicera japonica, Glycyrrhiza uralensis)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 108557 records from 1113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049098-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/28959
title: Chandra X-ray Observatory ObsId 28959

description: Characterizing the largest (~40kpc) radio jet in the first Gyr of the Universe
DOI: 10.25574/28991
title: Chandra X-ray Observatory ObsId 28991

description: Comprehensive Chandra, Gemini, JVLA and HST observations of a fast blue optical transient
DOI: 10.25574/28999
title: Chandra X-ray Observatory ObsId 28999

description: Comprehensive Chandra, Gemini, JVLA and HST observations of a fast blue optical transient
DOI: 10.15468/dl.99c2qt
title: Occurrence Download

description: A dataset containing 3195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ilex rotunda)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3195 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057952-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z543f
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Piciformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((120 60,150 60,150 90,120 90,120 60))"
 ]
}

 The dataset includes 245 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057951-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/29062
title: Chandra X-ray Observatory ObsId 29062

description: Verifying the cooling of the Cas A neutron star with HRC-S
DOI: 10.25574/29063
title: Chandra X-ray Observatory ObsId 29063

description: Verifying the cooling of the Cas A neutron star with HRC-S
DOI: 10.15468/dl.xcy4c9
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hasemania nana"
 ]
}

 The dataset includes 107 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057953-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2npk75
title: CCDC 2463577: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Christian Peifer, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2npkfc
title: CCDC 2463583: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Christian Peifer, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2npk86
title: CCDC 2463578: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Christian Peifer, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2npk97
title: CCDC 2463579: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Christian Peifer, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2npkb8
title: CCDC 2463580: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Christian Peifer, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2npm00
title: CCDC 2463632: Experimental Crystal Structure Determination

description: Related Article: J. T. Mague, M. Mirzaei|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.pvs4zy
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaponopselaphus Scheerpeltz, 1972"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024503-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2mjf4r
title: CCDC 2428854: Experimental Crystal Structure Determination

description: Related Article: Kun-Yu Wang, Yinding Chi, Claudia Pereyra Huelmo, Yaoye Hong, Zongsu Han, Kailin Chen, Christine Huang, Yaojun Zeng, Kunhao Yu, Ottman A. Tertuliano, Christopher B. Murray, Shu Yang|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c13591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjf5s
title: CCDC 2428855: Experimental Crystal Structure Determination

description: Related Article: Kun-Yu Wang, Yinding Chi, Claudia Pereyra Huelmo, Yaoye Hong, Zongsu Han, Kailin Chen, Christine Huang, Yaojun Zeng, Kunhao Yu, Ottman A. Tertuliano, Christopher B. Murray, Shu Yang|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c13591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uad9ky
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schouwia purpurea",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057955-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6tm7dk
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.4293 -36.40594,-71.21306 -36.40504,-71.21395 -36.1955,-71.4339 -36.1965,-71.4293 -36.40594))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 282 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057959-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yypx8u
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Toroidia toroides"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057958-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30295114
title: How does Visceral Leishmaniasis differ betweenBrazil and India, and can the same strategies used in India be implemented in Brazil to reduce disease burden?

description: Visceral leishmaniasis (VL) is a type of leishmaniasis and a neglected tropical disease. It is most prominent in Brazil and India, caused by parasites L. infantum and L. donovani (respectively); these are spread by various species of female sandflies. Case numbers in India were high until the National Kala-Azar Elimination Programme (NKAEP) was implemented. Over time, it became a strong eradication programme, causing a sharp decline in cases. However, Brazil has not achieved a significant case reduction, despite having an NKAEP equivalent: the Visceral Leishmaniasis Surveillance and Control Programme (VLSCP). Although the VLSCP targets certain factors, it is less efficient than the NKAEP. This review aims to analyse all major factors for this difference and evaluate whether Brazil can use similar strategies as India to reduce disease burden.To investigate this, the similarities and differences between parasites, vectors, reservoirs, socioeconomics, geography, poverty, and treatment strategies were compared. In Brazil, parasite genetics affect the efficacy of drug treatments; reservoirs, hosts, and sandfly behaviours impact the effectiveness of strategies implemented by the VLSCP; limited government funding towards the science sector affected the development of better therapies. Whilst Indian VL was less complex, its higher prevalence may have facilitated reduction efforts. The context in Brazil is different; therefore, using the same strategies as India is not proving as effective. It must look at solving extra problems such as multiple hosts, a more feasible way to handle the problems reservoirs cause in the disease transmission, and looking at developing more effective treatments.
DOI: 10.6084/m9.figshare.30295114.v1
title: How does Visceral Leishmaniasis differ betweenBrazil and India, and can the same strategies used in India be implemented in Brazil to reduce disease burden?

description: Visceral leishmaniasis (VL) is a type of leishmaniasis and a neglected tropical disease. It is most prominent in Brazil and India, caused by parasites L. infantum and L. donovani (respectively); these are spread by various species of female sandflies. Case numbers in India were high until the National Kala-Azar Elimination Programme (NKAEP) was implemented. Over time, it became a strong eradication programme, causing a sharp decline in cases. However, Brazil has not achieved a significant case reduction, despite having an NKAEP equivalent: the Visceral Leishmaniasis Surveillance and Control Programme (VLSCP). Although the VLSCP targets certain factors, it is less efficient than the NKAEP. This review aims to analyse all major factors for this difference and evaluate whether Brazil can use similar strategies as India to reduce disease burden.To investigate this, the similarities and differences between parasites, vectors, reservoirs, socioeconomics, geography, poverty, and treatment strategies were compared. In Brazil, parasite genetics affect the efficacy of drug treatments; reservoirs, hosts, and sandfly behaviours impact the effectiveness of strategies implemented by the VLSCP; limited government funding towards the science sector affected the development of better therapies. Whilst Indian VL was less complex, its higher prevalence may have facilitated reduction efforts. The context in Brazil is different; therefore, using the same strategies as India is not proving as effective. It must look at solving extra problems such as multiple hosts, a more feasible way to handle the problems reservoirs cause in the disease transmission, and looking at developing more effective treatments.
DOI: 10.15468/dl.2bysvq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((60 -30,90 -30,90 0,60 0,60 -30))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057960-250920141307145/datasets/export for details.
DOI: 10.15468/dl.5abdde
title: Occurrence Download

description: A dataset containing 9515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((90 -30,120 -30,120 0,90 0,90 -30))"
 ]
}

 The dataset includes 9515 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057956-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16814322
title: Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach

description: This repository contains the data associated to the study: "Exploring Chlamydia trachomatis global genomic diversity with a novel core-genome MLST (cgMLST) approach"
DOI: 10.15468/dl.pwggj4
title: Occurrence Download

description: A dataset containing 1797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1797 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057961-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/44319
title: Chandra X-ray Observatory ObsId 44319
DOI: 10.5281/zenodo.16814321
title: Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach (Supplementary material)

description: This repository contains the supplementary data and genome assemblies generated in the frame of the study: "Exploring Chlamydia trachomatis global genomic diversity with a novel core-genome MLST (cgMLST) approach" by Lodhia et al. 2025.

 

In this repository you will find:



"Assemblies.zip" - In this folder there are the 327 assemblies generated by this study, including the the 57 newly sequenced isolates from Portugal.

"Supplementary_files.zip" - In this folder there are all Supplementary files generated by this study and that served as source data for the main and supplementary figures.

"Supplementary_figures.zip"* - In this folder there are all Supplementary figures generated by this study.


*In this folder you will also find an interactive HTML version for the main Figure 3B, as well as for Supplementary Figure S6.

 

Citation

If you use this schema or the provided datasets in your work, please cite:



Zohra Lodhia, Verónica Mixão, Joana Isidro, Rita Ferreira, Dora Cordeiro, Cristina Correia, Inês João, João Paulo Gomes, Maria José Borrego and Vítor Borges (2025) Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach. Research Square. doi: 10.21203/rs.3.rs-7743240/v1

This repository


 

Funding

This work was funded by national funds through FCT - Foundation for Science and Technology, I.P., in the frame of Individual CEEC 2022.00851.CEECIND/CP1748/CT0001 (doi: 10.54499/2022.00851.CEECIND/CP1748/CT0001) and of the doctoral fellowship SFRH/BD/147446/2019 (doi: 10.54499/SFRH/BD/147446/2019), and by the European Union project “Sustainable use and integration of enhanced infrastructure into routine genome-based surveillance and outbreak investigation activities in Portugal” - GENEO [101113460] on behalf of the EU4H programme [EU4H-2022-DGA-MS-IBA-01-02].
DOI: 10.5281/zenodo.17226941
title: Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach (Supplementary material)

description: This repository contains the supplementary data and genome assemblies generated in the frame of the study: "Exploring Chlamydia trachomatis global genomic diversity with a novel core-genome MLST (cgMLST) approach" by Lodhia et al. 2025.

 

In this repository you will find:



"Assemblies.zip" - In this folder there are the 327 assemblies generated by this study, including the the 57 newly sequenced isolates from Portugal.

"Supplementary_files.zip" - In this folder there are all Supplementary files generated by this study and that served as source data for the main and supplementary figures.

"Supplementary_figures.zip"* - In this folder there are all Supplementary figures generated by this study.


*In this folder you will also find an interactive HTML version for the main Figure 3B, as well as for Supplementary Figure S6.

 

Citation

If you use this schema or the provided datasets in your work, please cite:



Zohra Lodhia, Verónica Mixão, Joana Isidro, Rita Ferreira, Dora Cordeiro, Cristina Correia, Inês João, João Paulo Gomes, Maria José Borrego and Vítor Borges (2025) Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach. bioRxiv.

This repository


 

Funding

This work was funded by national funds through FCT - Foundation for Science and Technology, I.P., in the frame of Individual CEEC 2022.00851.CEECIND/CP1748/CT0001 (doi: 10.54499/2022.00851.CEECIND/CP1748/CT0001) and of the doctoral fellowship SFRH/BD/147446/2019 (doi: 10.54499/SFRH/BD/147446/2019), and by the European Union project “Sustainable use and integration of enhanced infrastructure into routine genome-based surveillance and outbreak investigation activities in Portugal” - GENEO [101113460] on behalf of the EU4H programme [EU4H-2022-DGA-MS-IBA-01-02].