cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3640868_d1.v1
title: Additional file 2: Table S2. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Name of the species, sample ID, field ID and the place of collection of the specimens of the plants that are listed in the API. (XLS 84 kb)
DOI: 10.6084/m9.figshare.c.3640868_d2.v1
title: Additional file 1: Table S1. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Sanskrit name, botanical name given in the API, and the currently accepted botanical name for the 395 medicinal plants that are listed in API. (XLS 89 kb)
DOI: 10.6084/m9.figshare.c.3640868_d3.v1
title: Additional file 3: Table S3. of Creation of reference DNA barcode library and authentication of medicinal plant raw drugs used in Ayurvedic medicine

description: Details of the rbcL sequences that were curated from NCBI and BOLD system. (XLS 23 kb)
DOI: 10.5519/qd.oaung0w9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (138 records)
DOI: 10.6084/m9.figshare.c.3640895_d2.v1
title: Additional file 3 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S3. Error Transition Probabilities for all platforms. (ZIP 34 kb)
DOI: 10.6084/m9.figshare.c.3640895_d8.v1
title: Additional file 10 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S10. Heatmap of arc heal species in the EM community. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3640895_d11.v1
title: Additional file 9 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S9. Impact of PCR cycles on OTUs. (ZIP 43 kb)
DOI: 10.6084/m9.figshare.c.3640895_d9.v1
title: Additional file 4 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S4. Impact of platform and region on entropy. (ZIP 16 kb)
DOI: 10.6084/m9.figshare.c.3640901_d1.v1
title: Additional file 5: Table S5. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Dynamic flexion. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3640901_d2.v1
title: Additional file 4: Table S4. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Strength. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3640901_d3.v1
title: Additional file 6: Table S6. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: EMG. (XLS 134 kb)
DOI: 10.6084/m9.figshare.c.3640901_d4.v1
title: Additional file 1: Table S1. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Oxford Shoulder Score. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3640901_d5.v1
title: Additional file 2: Table S2. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: EQ-5D-5L. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3640901_d6.v1
title: Additional file 3: Table S3. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Range of motion. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640910_d1.v1
title: Additional file 1: of Influence of silicone oil tamponade on self-sealing sclerotomy using 25-gauge transconjunctival sutureless vitrectomy: a retrospective comparative study

description: Each factor and postoperative IOPs in each period of each case. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3640916_d1.v1
title: Additional file 2: of Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

description: S. saxicola assembly summary statistics. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3640964_d1.v1
title: Additional file 2: of A randomized trial of an intervention to improve resident-fellow teaching interactions on the wards

description: Data from pre and post surveys among control and intervention groups. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3640961_d4.v1
title: Additional file 2: Table S2. of Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome

description: Mango simple sequence repeats. (XLSX 102 kb)
DOI: 10.6084/m9.figshare.c.3640973_d1.v1
title: Additional file 2: of Integrated genomics approach to identify biologically relevant alterations in fewer samples

description: Additional Tables S1-S8: Copy number alterations of known genomic locations identified in HNSCC cell lines. Copy number alterations in halmark genes identified in HNSCC cell lines. Gene expression of hallmark genes by RNA sequencing and qPCR. Features of whole exome and transcriptome sequencing. Validation of mutations in hallmark and novel genes. Details of mutations identified by integrated analysis in HNSCC cell lines. Primer sequences used for Sanger sequenicng based validation of mutations. Primers used for copy number and gene expression study using qPCR. (ZIP 249Â kb)
DOI: 10.6084/m9.figshare.c.3641021_d5.v1
title: Additional file 8: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Mapping file for the assembly without quality trimming.
DOI: 10.6084/m9.figshare.c.3641021_d3.v1
title: Additional file 12: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Annotation file for the assembly with quality trimming.
DOI: 10.6084/m9.figshare.c.3641021_d6.v1
title: Additional file 13: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Mapping file for the assembly with quality trimming.
DOI: 10.6084/m9.figshare.c.3641021_d8.v1
title: Additional file 14: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Sequence table file for the assembly with quality trimming.
DOI: 10.15468/dl.48p2uq
title: Occurrence Download

description: A dataset containing 6382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Penelope purpurascens Wagler, 1830"
 ]
}

 The dataset includes 6382 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037985-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641021_d12.v1
title: Additional file 15: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: KEGG pathway file for the assembly with quality trimming.
DOI: 10.6084/m9.figshare.c.3641021_d11.v1
title: Additional file 10: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: KEGG pathway file for the assembly without quality trimming.
DOI: 10.6084/m9.figshare.c.3641021_d14.v1
title: Additional file 9: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Sequence table file for the assembly without quality trimming.
DOI: 10.15468/dl.wmsdhm
title: Occurrence Download

description: A dataset containing 11830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Patagioenas fasciata (Say, 1822)"
 ]
}

 The dataset includes 11830 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037984-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641021_d16.v1
title: Additional file 7: of De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

description: Annotation file for the assembly without quality trimming.
DOI: 10.6084/m9.figshare.c.3641036_d5.v1
title: Additional file 3: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Intra-family heterogeneity of most abundant TE families in the genomes of the five accessions of T. officinale. Number of clusters are presented for each model described in the method section. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3641036_d4.v1
title: Additional file 5: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Number of clusters, genomic abundance and proportions of most abundant transposable elements classified according to Wicker et al. [1] in the five accessions of T. officinale apomictic lineage. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3641036_d6.v1
title: Additional file 4: of Recent and dynamic transposable elements contribute to genomic divergence under asexuality

description: Statistical analyses of the relative abundance of TE classes between accessions, as estimated by read counts, at three hierarchical levels of annotation (Likelihood Ratio Chi-square test). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3641060_d2.v1
title: Additional file 1: of A new method of finding groups of coexpressed genes and conditions of coexpression

description: The matlab code of the algorithm made in the study. Contains the input example small dataset and the output resultant biclusters obtained by application of algorithm on the given small dataset. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3641063_d6.v1
title: Additional file 12. of Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis

description: MYC target genes as determined by the analysis of publically available ChIP-seq profiles and defined by the association of the MACS peaks (p value threshold = −30) with the TSS of genes using a 10-kb distance as an association criterion. (XLS 199 kb)
DOI: 10.6084/m9.figshare.c.3641063_d12.v1
title: Additional file 10. of Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis

description: Transcriptome data summary provided in Excel format. (XLS 1293 kb)
DOI: 10.6084/m9.figshare.c.3641105_d1.v1
title: Additional file 9: Table S4. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

description: Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs were regarded as DE if they had an absolute Log2 Fold Change of at least 1, and an adjusted P-value (FDR) of less than 0.05. (XLSX 7 kb)
DOI: 10.6084/m9.figshare.c.3641105_d3.v1
title: Additional file 5: Table S2. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

description: Differentially expressed (DE) mRNAs identified in response to MAB-R and MAB-S infection. Genes were regarded as DE if they had an absolute Log2 Fold Change of at least 1, and an adjusted P-value (FDR) of less than 0.05. (XLSX 336 kb)
DOI: 10.6084/m9.figshare.c.3641105_d2.v1
title: Additional file 3: Table S1. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

description: Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, the numbers of reads mapping uniquely to the human reference genome are indicated. For sRNA-seq libraries, the numbers of reads mapping to mature miRNAs from miRBase are given. (XLSX 7 kb)
DOI: 10.6084/m9.figshare.c.3641105_d9.v1
title: Additional file 6: Table S3. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

description: Overlap of the core responses to MAB and MTB. 73 genes were identified in both datasets. “Induced” indicates that the gene shows an increase in abundance upon infection; “Repressed” indicates that the gene shows a decrease in abundance upon infection. (XLSX 8 kb)
DOI: 10.7266/vj42v9pf
title: Oyster recruitment in Mississippi Sound from 2019-09-10 to 2021-10-12
DOI: 10.7266/r0bncbfd
title: CTD and spectroradiometer data, Mississippi Sound from 2022-04-01 to 2022-09-16
DOI: 10.6084/m9.figshare.c.3641147_d2.v1
title: MOESM3 of A high throughput drug screening assay to identify compounds that promote oligodendrocyte differentiation using acutely dissociated and purified oligodendrocyte precursor cells

description: Additional file 3. Table S2. NCC library acute OL differentiation screen data set.
DOI: 10.6084/m9.figshare.c.3641153_d1.v1
title: Additional file 2: Table S2. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 587AP1 gene products and their functional assignments. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641153_d2.v1
title: Additional file 4: Table S4. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 2256AP1 gene products and their functional assignments. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641153_d3.v1
title: Additional file 1: Table S1. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 535AP1 gene products and their functional assignments. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641153_d4.v1
title: Additional file 9: Table S9. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 3927AP2 gene products and their functional assignments. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3641153_d5.v1
title: Additional file 3: Table S3. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 1127AP1 gene products and their functional assignments. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3641153_d6.v1
title: Additional file 5: Table S5. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 535AP2 gene products and their functional assignments. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3641153_d8.v1
title: Additional file 7: Table S7. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 1152AP2 gene products and their functional assignments. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3641153_d7.v1
title: Additional file 6: Table S6. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 587AP2 gene products and their functional assignments. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641153_d9.v1
title: Additional file 8: Table S8. of Comparative analysis of multiple inducible phages from Mannheimia haemolytica

description: Feature of phage 3927AP1 gene products and their functional assignments. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3641159_d3.v1
title: Additional file 2: of Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants

description: Probes and primer sequences. (XLSX 262 kb)
DOI: 10.6084/m9.figshare.c.3641159_d4.v1
title: Additional file 4: of Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants

description: Pooled reads of the conserved miRNAs identified from the sRNA reads generated by sequencing of the sRNAs libraries and details of the precursors of the novel and conserved miRNAs validated experimentally for their presence in S. maritima. (XLSX 42 kb)
DOI: 10.5519/qd.chcdrygl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (314 records)
DOI: 10.6084/m9.figshare.c.3641186_d3.v1
title: Additional file 5: Table S2. of Shadowed by scale: subtle behavioral niche partitioning in two sympatric, tropical breeding albatross species

description: Effects of species, astronomical state and their interaction on movement parameters (Parameters coefficient ± SD). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641210_d2.v1
title: MOESM2 of Fine-tuning of chromatin composition and Polycomb recruitment by two Mi2 homologues during C. elegans early embryonic development

description: Additional file 2. RNA-Seq deregulated genes. Processed lists of deregulated genes in the indicated genotypes versus control are displayed below. A threshold of 1.5 log2 fold change and a p value &lt;10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4); controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type; control(RNAi)-treated embryos. _1 h and _3 h correspond to the 24- and 100-cell stages, respectively.
DOI: 10.6084/m9.figshare.c.3641213_d4.v1
title: MOESM4 of Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers

description: Additional file 4: Table S4. Title: List of annotated SNPs and their corresponding genes used for Ingenuity Pathway Analysis. Description: The table contains SNPs with the corresponding information on the genes in which they are located and together with p-values obtained in the genome-wide association study.
DOI: 10.6084/m9.figshare.c.3641213_d3.v1
title: MOESM10 of Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers

description: Additional file 10: Table S7. Title: List of biological pathways significantly enriched with genes in genomic regions associated with measured traits. Description: Results for the biological pathway significantly (P
DOI: 10.6084/m9.figshare.c.3641240_d6.v1
title: MOESM7 of Hemodynamic numerical simulations of the disturbance due to intracoronary flow measurements by a Doppler guide wire

description: Additional file 7. Geometry in parasolid file format, for configuration “with wire”.
DOI: 10.6084/m9.figshare.c.3641240_d5.v1
title: MOESM4 of Hemodynamic numerical simulations of the disturbance due to intracoronary flow measurements by a Doppler guide wire

description: Additional file 4. Matlab script to iteratively run the CFD simulations with updated inlet velocity for Newtonâ  s method.
DOI: 10.6084/m9.figshare.c.3641249_d2.v1
title: Additional file 1: of Expression and pathological effects of periostin in human osteoarthritis cartilage

description: Primer list for qRT-PCR. (XLSX 10Â kb)
DOI: 10.7266/fwatqes2
title: Surface water quality data obtained from Mississippi Sound from 2021-06-02 to 2021-09-29
DOI: 10.6084/m9.figshare.c.3641261_d2.v1
title: Additional file 2: Table S2. of Transcriptional analysis of immune-related gene expression in p53-deficient mice with increased susceptibility to influenza A virus infection

description: List of genes showing a significantly attenuated expression 3 and 6 dpi in p53KO mice as compared to p53WT mice. (XLS 254 kb)
DOI: 10.6084/m9.figshare.c.3641261_d4.v1
title: Additional file 3: Table S3. of Transcriptional analysis of immune-related gene expression in p53-deficient mice with increased susceptibility to influenza A virus infection

description: List of genes expressed 3 and 6 dpi in p53KO mice with an expression significantly higher than in p53 WT mice. (XLS 324 kb)
DOI: 10.6084/m9.figshare.c.3641261_d3.v1
title: Additional file 6: Table S5. of Transcriptional analysis of immune-related gene expression in p53-deficient mice with increased susceptibility to influenza A virus infection

description: List of immune-related genes showing a significantly attenuated expression 3 and 6 dpi in p53KO mice as compared to p53WT mice. (XLS 104 kb)
DOI: 10.6084/m9.figshare.c.3641261_d6.v1
title: Additional file 7: Table S6. of Transcriptional analysis of immune-related gene expression in p53-deficient mice with increased susceptibility to influenza A virus infection

description: List of immune-related genes expressed 3 and 6 dpi in p53KO mice with an expression significantly higher than in p53 WT mice. (XLS 108 kb)
DOI: 10.6084/m9.figshare.c.3641270_d2.v1
title: Additional file 2: of Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress

description: Phenotypic data for blood chemistry components in 468 advanced intercross line chickens.Â (XLSX 123Â kb)
DOI: 10.6084/m9.figshare.c.3641363_d1.v1
title: Additional file 2: of Do holes in long-lasting insecticidal nets compromise their efficacy against pyrethroid resistant Anopheles gambiae and Culex quinquefasciatus? Results from a release–recapture study in experimental huts

description: Data from experiments.
DOI: 10.6084/m9.figshare.c.3641363_d4.v1
title: Additional file 4: of Do holes in long-lasting insecticidal nets compromise their efficacy against pyrethroid resistant Anopheles gambiae and Culex quinquefasciatus? Results from a release–recapture study in experimental huts

description: Risk ratios of mosquitoes being fed or dead depending on location.
DOI: 10.6084/m9.figshare.c.3641369_d1.v1
title: MOESM3 of The 60S ribosomal protein L13 is the most preferable reference gene to investigate gene expression in selected organs from turkeys and chickens, in context of different infection models

description: Additional file 3. Raw CT values obtained in the present work. The raw CT values of all RT-qPCR experiments were used for calculations with different algorithms to assess the stability of each reference gene candidate.
DOI: 10.6084/m9.figshare.c.3641369_d3.v1
title: MOESM2 of The 60S ribosomal protein L13 is the most preferable reference gene to investigate gene expression in selected organs from turkeys and chickens, in context of different infection models

description: Additional file 2. RNA integrity number measured with Bioanalyzer2100. The RIN values of all the samples used in the experiment are given.
DOI: 10.6084/m9.figshare.c.3641378_d1.v1
title: Additional file 1: of Attentional and affective consequences of technology supported mindfulness training: a randomised, active control, efficacy trial

description: Complete Study Data. Complete study data from the baseline and follow-up assessments and the daily experience sampling data. (CSV 32 kb)