cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15113031.v1
title: Dataset: Heavy metals distribution in some Nigerian leafy vegetables -A mini-review

description: Dataset of the review article titled: Heavy metals distribution in some Nigerian leafy vegetables -A mini-review<br>
DOI: 10.5281/zenodo.5177213
title: actuatorCylinderSimpleFoam-simulations-results

description: Creator: Edgar Martinez-Ojeda Title: actuatorCylinderSimpleFoam-simulations-results Description: Data from two wind farms: the small-scale wind farm made of 4 turbines and the large-scale wind farm made of 8 turbines. These are log files with printed information from the solver as well as the power coefficients. Date of last of access: august 11, 2021.
DOI: 10.5517/ccdc.csd.cc2453q5
title: CCDC 1971126: Experimental Crystal Structure Determination

description: Related Article: Rajini Anumula, Arthur C. Reber, Pan An, Chaonan Cui, Mengdi Guo, Haiming Wu, Zhixun Luo, Shiv. N. Khanna|2020|Nanoscale|12|14801|doi:10.1039/D0NR02448A
DOI: 10.5517/ccdc.csd.cc244dvk
title: CCDC 1970448: Experimental Crystal Structure Determination

description: Related Article: Kun Cai, Wenjun Tan, Nian Zhao, Hongming He|2020|Cryst.Growth Des.|20|4845|doi:10.1021/acs.cgd.0c00636
DOI: 10.34943/6ad87478-f8ae-4c98-8cee-5ed7b20443d8
title: Strait of Georgia East Fluorometer Turbidity Deployed 2021-03-26

description: The WET Labs ECO FLNTUSB 2473 was deployed on 2021-03-26 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Fluorometer Turbidity. Fluorometer Turbidity instruments measure chlorophyll fluorescence and turbidity within the same volume of seawater. The instrument uses a light emitting diode (LED) to provide an excitation source. The fluoresced light is received by a detector at a particular angle from the LED source, and uses an interference filter to discriminate against scattered excitation light. Turbidity is measured at the same time, by detecting scattered light from a LED, which is positioned at the same angle as the chlorophyll fluorescence. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.5182091
title: FASTEN OSPS iiLAB dataset

description: OSPS (Open Scalable Production System) data generated at INESC TEC Industry and Innovation Lab (iiLAB) for the FASTEN project. Data was extracted from the Advanced Plant Model component and includes the digital representation of the iiLAB and data used by robotic manipulators in the manipulation of physical parts representing production pieces from the aeronautic industry.
DOI: 10.5281/zenodo.5182090
title: FASTEN OSPS iiLAB dataset

description: OSPS (Open Scalable Production System) data generated at INESC TEC Industry and Innovation Lab (iiLAB) for the FASTEN project. Data was extracted from the Advanced Plant Model component and includes the digital representation of the iiLAB and data used by robotic manipulators in the manipulation of physical parts representing production pieces from the aeronautic industry.
DOI: 10.6084/m9.figshare.15152166
title: data for NN-A72265C

description: Genetically identified amygdala-striatal circuits for valence-specific behaviors
DOI: 10.6084/m9.figshare.15152166.v1
title: data for NN-A72265C

description: Genetically identified amygdala-striatal circuits for valence-specific behaviors
DOI: 10.6084/m9.figshare.14869470
title: Transcriptomic and functional proteomics analyses to unveil the common and unique pathway(s) of neuritogenesis induced by Russell’s viper venom nerve growth factor in rat pheochromocytoma neuronal cells

description: <b>Background</b><b>:</b> The snake venom nerve growth factor (NGF)-induced signal transduction mechanism has never been explored. <b>Research design and methods</b><b>:</b> Homology modeling and molecular dynamic studies of the interaction between Russell’s viper venom NGF (RVV-NGFa) and mammalian tropomyosin-receptor kinase A (TrkA) was done by computational analysis. Transcriptomic and quantitative tandem mass spectrometry analyses determined the expression of intracellular genes and proteins, respectively, in RVV-NGFa-treated PC-12 neuronal cells. Small synthetic inhibitors of the signal transduction pathways were used to validate the major signaling cascades of neuritogenesis by RVV-NGFa. <b>Results</b><b>:</b> A comparative computational analysis predicted the binding of RVV-NGFa, mouse 2.5S-NGF (conventional neurotrophin), and Nn-α-elapitoxin-1 (non-conventional neurotrophin) to different domains of the TrkA receptor in PC-12 cells. The transcriptomic and quantitative proteomic analyses in unison showed differential expressions of common and unique genes and intracellular proteins, respectively, in RVV-NGFa-treated cells compared to control (untreated) mouse 2.5S-NGF and Nn-α-elapitoxin-1-treated PC-12 cells. The RVV-NGFa primarily triggered the mitogen-activated protein kinase-1 (MAPK1) signaling pathway for inducing neuritogenesis; however, 36 pathways of neuritogenesis were uniquely expressed in RVV-NGFa-treated PC-12 cells compared to mouse 2.5S NGF or Nn-α-elapitoxin-1 treated cells. <b>Conclusion</b><b>:</b> The common and unique intracellular signaling pathways of neuritogenesis by classical and non-classical neurotrophins were identified.
DOI: 10.6084/m9.figshare.14869470.v1
title: Transcriptomic and functional proteomics analyses to unveil the common and unique pathway(s) of neuritogenesis induced by Russell’s viper venom nerve growth factor in rat pheochromocytoma neuronal cells

description: <b>Background</b><b>:</b> The snake venom nerve growth factor (NGF)-induced signal transduction mechanism has never been explored. <b>Research design and methods</b><b>:</b> Homology modeling and molecular dynamic studies of the interaction between Russell’s viper venom NGF (RVV-NGFa) and mammalian tropomyosin-receptor kinase A (TrkA) was done by computational analysis. Transcriptomic and quantitative tandem mass spectrometry analyses determined the expression of intracellular genes and proteins, respectively, in RVV-NGFa-treated PC-12 neuronal cells. Small synthetic inhibitors of the signal transduction pathways were used to validate the major signaling cascades of neuritogenesis by RVV-NGFa. <b>Results</b><b>:</b> A comparative computational analysis predicted the binding of RVV-NGFa, mouse 2.5S-NGF (conventional neurotrophin), and Nn-α-elapitoxin-1 (non-conventional neurotrophin) to different domains of the TrkA receptor in PC-12 cells. The transcriptomic and quantitative proteomic analyses in unison showed differential expressions of common and unique genes and intracellular proteins, respectively, in RVV-NGFa-treated cells compared to control (untreated) mouse 2.5S-NGF and Nn-α-elapitoxin-1-treated PC-12 cells. The RVV-NGFa primarily triggered the mitogen-activated protein kinase-1 (MAPK1) signaling pathway for inducing neuritogenesis; however, 36 pathways of neuritogenesis were uniquely expressed in RVV-NGFa-treated PC-12 cells compared to mouse 2.5S NGF or Nn-α-elapitoxin-1 treated cells. <b>Conclusion</b><b>:</b> The common and unique intracellular signaling pathways of neuritogenesis by classical and non-classical neurotrophins were identified.
DOI: 10.3886/e113462v1-93800
title: Replication data for: A Randomized Assessment of Online Learning

description: A microeconomics principles course employing random assignment across three sections with different teaching models is used to explore learning outcomes as measured by a cumulative final exam for students who participate in traditional face-to-face classroom instruction, blended face-to-face and online instruction with reduced instructor contact time, and a purely online instructional format. Evidence indicates learning outcomes were reduced for students in the purely online section relative to those in the face-to-face format by 5 to 10 points on a cumulative final exam. No statistically significant differences in outcomes are observed for students in the blended relative to the face-to-face section.
DOI: 10.6084/m9.figshare.14839484
title: Efficient Covariate Balancing for the Local Average Treatment Effect

description: This article develops an empirical balancing approach for the estimation of treatment effects under two-sided noncompliance using a binary instrumental variable. The method weighs both treatment and outcome information with inverse probabilities to impose exact finite sample balance across instrument level groups. It is free of functional form assumptions on the outcome or the treatment selection step. By tailoring the loss function for the instrument propensity scores, the resulting treatment effect estimates are automatically weight normalized and exhibit both low bias and reduced variance in finite samples compared to conventional inverse probability weighting methods. We provide conditions for asymptotic normality and semiparametric efficiency and demonstrate how to use additional information about the treatment selection step for bias reduction in finite samples. A doubly robust extension is proposed as well. Monte Carlo simulations suggest that the theoretical advantages translate well to finite samples. The method is illustrated in an empirical example.
DOI: 10.6084/m9.figshare.14839484.v2
title: Efficient Covariate Balancing for the Local Average Treatment Effect

description: This article develops an empirical balancing approach for the estimation of treatment effects under two-sided noncompliance using a binary instrumental variable. The method weighs both treatment and outcome information with inverse probabilities to impose exact finite sample balance across instrument level groups. It is free of functional form assumptions on the outcome or the treatment selection step. By tailoring the loss function for the instrument propensity scores, the resulting treatment effect estimates are automatically weight normalized and exhibit both low bias and reduced variance in finite samples compared to conventional inverse probability weighting methods. We provide conditions for asymptotic normality and semiparametric efficiency and demonstrate how to use additional information about the treatment selection step for bias reduction in finite samples. A doubly robust extension is proposed as well. Monte Carlo simulations suggest that the theoretical advantages translate well to finite samples. The method is illustrated in an empirical example.
DOI: 10.6084/m9.figshare.14839484.v1
title: Efficient Covariate Balancing for the Local Average Treatment Effect*

description: This paper develops an empirical balancing approach for the estimation of treatment effects under two-sided noncompliance using a binary instrumental variable. The method weighs both treatment and outcome information with inverse probabilities to impose exact finite sample balance across instrument level groups. It is free of functional form assumptions on the outcome or the treatment selection step. By tailoring the loss function for the instrument propensity scores, the resulting treatment effect estimates are automatically weight normalized and exhibit both low bias and reduced variance in finite samples compared to conventional inverse probability weighting methods. We provide conditions for asymptotic normality and semiparametric efficiency and demonstrate how to utilize additional information about the treatment selection step for bias reduction in finite samples. A doubly robust extension is proposed as well. Monte Carlo simulations suggest that the theoretical advantages translate well to finite samples. The method is illustrated in an empirical example.
DOI: 10.6084/m9.figshare.15152214
title: Hiatal Hernia.sav

description: <strong>Preoperatif aneminin hiatal herni cerrahisi ve postoperatif komplikasyonlara etkisi</strong><strong></strong>
DOI: 10.6084/m9.figshare.15152214.v1
title: Hiatal Hernia.sav

description: <strong>Preoperatif aneminin hiatal herni cerrahisi ve postoperatif komplikasyonlara etkisi</strong><strong></strong>
DOI: 10.5281/zenodo.5182315
title: brassica-snps supplementary materials

description: This repository contains the following files: brassica-bsa-supplementary.docx - supplementary methods description st1_histogram_flowering_time_Brassica_F1.xlsx - Supplementary Table 1 st2_bulk_sequencing_yields.docx - Supplementary Table 2 st3_seacompare.html - Supplementary Table 3 st4_snpeff.xlsx - Supplementary Table 4 st5_seqstats_genome.xlsx - Supplementary Table 5
DOI: 10.5281/zenodo.5182314
title: brassica-snps supplementary materials

description: This repository contains the following files: brassica-bsa-supplementary.docx - supplementary methods description st1_histogram_flowering_time_Brassica_F1.xlsx - Supplementary Table 1 st2_bulk_sequencing_yields.docx - Supplementary Table 2 st3_seacompare.html - Supplementary Table 3 st4_snpeff.xlsx - Supplementary Table 4 st5_seqstats_genome.xlsx - Supplementary Table 5
DOI: 10.6073/pasta/0a50d8504771509274be48e823fde85d
title: Meiobenthos abundance. Long-term variability and dynamics of estuarine meiobenthic populations for North Inlet Estuary, South Carolina, from 1972 to 1992, North Inlet LTER (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-nin/6/1. The abstract below was extracted from the Level 0 data package and is included for context: The original purpose of this research was to determine if natural meiobenthic assemblages exhibited continuity over time and to monitor several physical variables to determine if these influenced long-term temporal patterns. The most recent study focused on variation and the relations of meiobenthos abundance with environmental factors over 11 years. Typically marine benthic community studies are limited temporally and the majority of previously published 'longterm' meiofauna results (all taxa) were based on about a year's duration.
DOI: 10.6084/m9.figshare.15152382
title: Orthologous gene clusters among metagenomic assembled genomes (MAGs)

description: The shared orthologues within each order: Pseudomonadales, Beggiatoales , Rhodobacterales Rhizobiales, Flavobacteriales, and Campylobacterales.
DOI: 10.6084/m9.figshare.15152382.v1
title: Orthologous gene clusters among metagenomic assembled genomes (MAGs)

description: The shared orthologues within each order: Pseudomonadales, Beggiatoales , Rhodobacterales Rhizobiales, Flavobacteriales, and Campylobacterales.
DOI: 10.5517/ccdc.csd.cc1267m4
title: CCDC 989105: Experimental Crystal Structure Determination

description: Related Article: Rana Muhammad Irfan, Muhammad Ashraf Shaheen, Muhammad Saleem, Muhammad Nawaz Tahir, Khurram Shahzad Munawar, Saeed Ahmad, Syeda Laila Rubab, Tehreem Tahir, Katarzyna Kotwica-Mojzych, Mariusz Mojzych|2021|Arab.J.Chem.|14|103308|doi:10.1016/j.arabjc.2021.103308
DOI: 10.5517/ccdc.csd.cc244bxk
title: CCDC 1970388: Experimental Crystal Structure Determination

description: Related Article: Cary R. Stennett, Clifton L. Wagner, James C. Fettinger, Petra Vasko, Philip P. Power|2021|Inorg.Chem.|60|11401|doi:10.1021/acs.inorgchem.1c01399
DOI: 10.5517/ccdc.csd.cc246r26
title: CCDC 1972687: Experimental Crystal Structure Determination

description: Related Article: Yunhe Lv, Weiya Pu, Xueli Zhu, Chen Chen, Shanshan Wang|2021|J.Org.Chem.|86|10043|doi:10.1021/acs.joc.1c00789
DOI: 10.5519/qd.huid8tv7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (53 records)
DOI: 10.5517/ccdc.csd.cc26vnqg
title: CCDC 2051416: Experimental Crystal Structure Determination

description: Related Article: Nikita Chakraborty, Anjali Dahiya, Amitava Rakshit, Anju Modi, Bhisma K. Patel|2021|Org.Biomol.Chem.|19|6847|doi:10.1039/D1OB01086G
DOI: 10.5517/ccdc.csd.cc2725s9
title: CCDC 2057680: Experimental Crystal Structure Determination

description: Related Article: Cai-Ming Liu, Rong Sun, Xiang Hao, Bingwu Wang|2021|Cryst.Growth Des.|21|4346|doi:10.1021/acs.cgd.1c00246
DOI: 10.5517/ccdc.csd.cc2725tb
title: CCDC 2057681: Experimental Crystal Structure Determination

description: Related Article: Cai-Ming Liu, Rong Sun, Xiang Hao, Bingwu Wang|2021|Cryst.Growth Des.|21|4346|doi:10.1021/acs.cgd.1c00246
DOI: 10.6084/m9.figshare.15152388.v1
title: Untitled Phylogenetic tree of metagenomic assembled genomes (MAGs)

description: The tree was generated using the Genome Taxonomy Database Toolkit (GTDB-Tk).
DOI: 10.6084/m9.figshare.15152388.v2
title: Untitled Phylogenetic tree of metagenomic assembled genomes (MAGs)

description: The tree was generated using the Genome Taxonomy Database Toolkit (GTDB-Tk).
DOI: 10.6073/pasta/63a02db48e8bc925f6185e7437bf341a
title: A search index for the ecocomDP R package

description: This data package contains summary information of datasets in the ecocomDP format published by EDI and NEON. This summary information is formatted in a search index used by the search function of the ecocomDP R package.
DOI: 10.6073/pasta/9170a89971d9e966401d82694cc16c55
title: Zooplankton Data for North Inlet Estuary, South Carolina, from 1981 to 1992, North Inlet LTER (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-nin/2/1. The abstract below was extracted from the Level 0 data package and is included for context: This data package consists of Zooplankton Data for North Inlet Estuary, South Carolina, from 1981 to 1992, North Inlet LTER. The purpose of the long term monitoring of zooplankton was to characterize the fauna in the water column larger than or equal to 153 microns and to obtain some basic information on each of the taxa encountered there. A sampling regime of collections made at regular biweekly intervals was implemented to provide the best quantitative assessment of long term changes in the zooplankton population dynamics.
DOI: 10.6084/m9.figshare.13656224.v1
title: RES-11 Data

description: Mplus data for factor analysis and measurement invariance testing
DOI: 10.6084/m9.figshare.13656224
title: RES-11 Data

description: Mplus data for factor analysis and measurement invariance testing
DOI: 10.5281/zenodo.5176884
title: AutoCAT

description: AutoCAT is a computational method to predict tumor-associated TCRs from targeted TCR-seq data. Included in this dataset are the concatenated control and lung cancer cohort samples ("trainingData.txt") and the cluster file produced by applying GIANA to the concatenated file ("trainingData--RotationEncodingBL62.txt.") The original, unprocessed data are provided on the GitHub under the "trainingData" directory as well as the final training and validation files for input to DeepCAT.
DOI: 10.5281/zenodo.5176883
title: AutoCAT

description: AutoCAT is a computational method to predict tumor-associated TCRs from targeted TCR-seq data. Included in this dataset are the concatenated control and lung cancer cohort samples ("trainingData.txt") and the cluster file produced by applying GIANA to the concatenated file ("trainingData--RotationEncodingBL62.txt.") The original, unprocessed data are provided on the GitHub under the "trainingData" directory as well as the final training and validation files for input to DeepCAT.
DOI: 10.6084/m9.figshare.15152544.v2
title: Chemical and operational data from full-scale wastewater treatment plant adaptations for enhanced biological phosphorus removal

description: Real-time and lab analysis data of water quality and treatment parameters in control and modified full-scale activated sludge basins in a wastewater treatment plant.
DOI: 10.6084/m9.figshare.15152544.v3
title: Chemical and operational data from full-scale wastewater treatment plant adaptations for enhanced biological phosphorus removal

description: Real-time and lab analysis data of water quality and treatment parameters in control and modified full-scale activated sludge basins in a wastewater treatment plant.
DOI: 10.6084/m9.figshare.15152475
title: 16S rRNA sequences

description: 16S rRNA sequences generated from shotgun metagenome data. The PhyloFlash file contain contigs assembled via the program Spades that was wrapped by the program Phyloflash. The files "All..." and "Five..." are 16S rRNA sequences assembled by MegaHit and were binned to one of the 16 bins by MaxBin2. The "Five_16SrRNA_from_bins.fa" file has 16S rRNA sequences that were correctly binned based on the bins and the 16S sequence taxonomic identity.
DOI: 10.6084/m9.figshare.15152475.v1
title: 16S rRNA sequences

description: 16S rRNA sequences generated from shotgun metagenome data
DOI: 10.15152/qdb.241
title: Data for: The Quantitative Structure-Property Relationships for the gas-ionic liquid partition coefficient of a large variety of organic compounds in three ionic liquids. QsarDB repository, QDB.

description: This QDB archive contains data and model(s) from the following publication: Toots, K. M.; Sild, S.; Leis, J.; Maran, U. The Quantitative Structure-Property Relationships for the gas-ionic liquid partition coefficient of a large variety of organic compounds in three ionic liquids. J. Mol. Liq. 2021.
DOI: 10.5517/ccdc.csd.cc272y6h
title: CCDC 2058406: Experimental Crystal Structure Determination

description: Related Article: Kulbir, Sandip Das, Tarali Devi, Mrigaraj Goswami, Mahesh Yenuganti, Prabhakar Bhardwaj, Somnath Ghosh, Subash Chandra Sahoo, Pankaj Kumar|2021|CSD Communication|||
description: Related Article: Kulbir, Sandip Das, Tarali Devi, Mrigaraj Goswami, Mahesh Yenuganti, Prabhakar Bhardwaj, Somnath Ghosh, Subash Chandra Sahoo, Pankaj Kumar|2021|Chemical Science|12|10605|doi:10.1039/D1SC00803J
DOI: 10.5517/ccdc.csd.cc27340j
title: CCDC 2058586: Experimental Crystal Structure Determination

description: Related Article: Ping Lu, Jun Chen, Zhan Shi, Chunyu Li|2021|CSD Communication|||
description: Related Article: Jun Chen, Zhan Shi, Chunyu Li, Ping Lu|2021|Chemical Science|12|10598|doi:10.1039/D1SC02119B
DOI: 10.5517/ccdc.csd.cc27341k
title: CCDC 2058587: Experimental Crystal Structure Determination

description: Related Article: Ping Lu, Jun Chen, Zhan Shi, Chunyu Li|2021|CSD Communication|||
description: Related Article: Jun Chen, Zhan Shi, Chunyu Li, Ping Lu|2021|Chemical Science|12|10598|doi:10.1039/D1SC02119B
DOI: 10.5517/ccdc.csd.cc27342l
title: CCDC 2058588: Experimental Crystal Structure Determination

description: Related Article: Ping Lu, Jun Chen, Zhan Shi, Chunyu Li|2021|CSD Communication|||
description: Related Article: Jun Chen, Zhan Shi, Chunyu Li, Ping Lu|2021|Chemical Science|12|10598|doi:10.1039/D1SC02119B
DOI: 10.5517/ccdc.csd.cc2737g2
title: CCDC 2058693: Experimental Crystal Structure Determination

description: Related Article: Ping Lu, Jun Chen, Zhan Shi, Chunyu Li|2021|CSD Communication|||
description: Related Article: Jun Chen, Zhan Shi, Chunyu Li, Ping Lu|2021|Chemical Science|12|10598|doi:10.1039/D1SC02119B
DOI: 10.5517/ccdc.csd.cc2737by
title: CCDC 2058689: Experimental Crystal Structure Determination

description: Related Article: Cary R. Stennett, Clifton L. Wagner, James C. Fettinger, Petra Vasko, Philip P. Power|2021|Inorg.Chem.|60|11401|doi:10.1021/acs.inorgchem.1c01399
DOI: 10.5517/ccdc.csd.cc27hklx
title: CCDC 2070539: Experimental Crystal Structure Determination

description: Related Article: Cary R. Stennett, Clifton L. Wagner, James C. Fettinger, Petra Vasko, Philip P. Power|2021|Inorg.Chem.|60|11401|doi:10.1021/acs.inorgchem.1c01399