cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22656721.v1
title: Supplementary Material for: A 23-year-old male testis cancer with spontaneously ruptured teratocarcinoma and no history of trauma: A Case Reports

description: Teratocarcinoma is a type of testis cancer that can be represented in the youth population. It usually shows itself with swelling of the testis and edema and a rise of BHCG and alpha-fetoprotein, but spontaneous rupture is a rare manifestation. A case 23-year-old was referred to The Sina hospital with testis pain and swelling complaints. Laboratory finding was alpha f.p was more than 2000, BHCG titer 255.21, and LDH 504. sonography findings show the right testis had been detected with a heterogeneous mass with vascularity and cystic area with microcalcification and 76*69 mm. in during surgery, we faced with rupture tumor that was unusual and rare. The radical orchidectomy was done successfully without any complications. After the surgery, pathology showed teratocarcinoma of the right testis, and a six-month observation and follow-up were done without difficulty.
DOI: 10.6084/m9.figshare.14417639.v1
title: Raw fluorescent signal data of paper "A Rapid, Accurate, Scalable and Portable Testing (SPOT) System for COVID-19 Diagnosis"

description: In this dataset, we provided the original data of the paper "A Rapid, Accurate, Scalable and Portable Testing (SPOT) System for COVID-19 Diagnosis", in which included the original fluorescent readouts.
DOI: 10.6084/m9.figshare.16546455.v1
title: Supplementary Material for: Age, Serum Creatinine, and Left Ventricular Ejection Fraction Improved the Performance of the CatLet Angiographic Scoring System in Terms of Outcome Predictions for Patients with Acute Myocardial Infarction: A Median 4.3-Year Follow-Up Study

description: <b><i>Background:</i></b> We recently developed the Coronary Artery Tree description and Lesion EvaluaTion (CatLet) angiographic scoring system. Our preliminary study demonstrated that the CatLet score better predicted clinical outcomes than the SYNTAX score. The current study aimed at assessing whether 3 clinical variables (CVs) – age, serum creatinine, and left ventricular ejection fraction (LVEF) – improved the performance of the CatLet score in outcome predictions in patients with acute myocardial infarction (AMI). <b><i>Methods:</i></b> This study was a post hoc study of the CatLet score validation trial. Primary endpoint was major adverse cardiac or cerebrovascular events (MACCEs), and secondary endpoints were all-cause deaths and cardiac deaths. <b><i>Results:</i></b> Over 1,185 person-years (median [interquartile range], 4.3 [3.8–4.9] years), there were 64 MACCEs (20.8%), 56 all-cause deaths (18.2%), and 47 cardiac deaths (15.2%). The addition of the 3 CVs to the stand-alone CatLet score significantly increased the Harrell’s C-index by 0.0967 (<i>p</i> = 0.002) in MACCEs, by 0.1354 (<i>p</i> &lt; 0.001) in all-cause deaths, and by 0.1187 (<i>p</i> = 0.001) in cardiac deaths. When compared with the stand-alone CatLet score, improved discrimination and better calibration led to a significantly refined risk stratification, particularly at the intermediate-risk category. <b><i>Conclusions:</i></b> CatLet score had a predicting value for clinical outcome in AMI patients. This predicting value can be improved through a combination with age, serum creatinine, and LVEF (http://www.chictr.org.cn; unique identifier: ChiCTR-POC-17013536).
DOI: 10.6084/m9.figshare.19116233.v1
title: Survey of Consumer Finances, 2016, Inheritance Extract

description: Extract from 2016 SCF focused on studying the impacts of race and education on inheritances<br>
DOI: 10.6084/m9.figshare.19681248.v1
title: Supplementary Material for: Patient Acceptability of a Novel Technological Solution (Ambient Intelligent Geriatric Management System) to Prevent Falls in Geriatric and General Medicine Wards: A Mixed-Methods Study

description: <b><i>Introduction:</i></b> As effective interventions to prevent inpatient falls are lacking, a novel technological intervention was trialed. The Ambient Intelligent Geriatric Management (AmbIGeM) system used wearable sensors that detected and alerted staff of patient movements requiring supervision. While the system did not reduce falls rate, it is important to evaluate the acceptability, usability, and safety of the AmbIGeM system, from the perspectives of patients and informal carers. <b><i>Methods:</i></b> We conducted a mixed-methods study using semistructured interviews, a pre-survey and post-survey. The AmbIGeM clinical trial was conducted in two geriatric evaluation and management units and a general medical ward, in two Australian hospitals, and a subset of participants were recruited. Within 3 days of being admitted to the study wards and enrolling in the trial, 31 participants completed the pre-survey. Prior to discharge (post-intervention), 30 participants completed the post-survey and 27 participants were interviewed. Interview data were thematically analyzed and survey data were descriptively analyzed. <b><i>Results:</i></b> Survey and interview participants had an average age of 83 (SD 9) years, 65% were female, and 41% were admitted with a fall. Participants considered the AmbIGeM system a good idea. Most but not all thought the singlet and sensor component as acceptable and comfortable, with no privacy concerns. Participants felt reassured with extra monitoring, although sometimes misunderstood the purpose of AmbIGeM as detecting patient falls. Participants’ acceptability was strongly positive, with median 8+ (0–10 scale) on pre- and post-surveys. <b><i>Discussion/Conclusion:</i></b> Patients’ acceptability is important to optimize outcomes. Overall older patients considered the AmbIGeM system as acceptable, usable, and improving safety. The findings will be important to guide refinement of this and other similar technology developments.
DOI: 10.6084/m9.figshare.6843701.v2
title: Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes

description: Soil microbial diversity, by high-throughput sequencing data to characterise the variation in marker gene sequences, for 14 sites along a 3000 m elevation gradient in tropical forest in Peru. For bacterial community composition, the 16S rRNA gene was amplified in triplicate PCR reactions using the 515f and 806r primers. For fungal community composition, the first internal transcribed spacer region (ITS1) of the rRNA gene was amplified using the ITS1-F and ITS2 primer pair.
DOI: 10.6084/m9.figshare.2015466.v1
title: NanoPUZZLES list of evaluated references

description: This file is a ZIP archive which contains a spreadsheet of evaluated references prepared within the NanoPUZZLES EU project [http://www.nanopuzzles.eu], along with a README file documenting this spreadsheet.Disclaimers:(1) this work has not undergone peer review(2) no endorsement by third parties should be inferred<br>(3) *You are strongly advised to read the "Important Caveats" section of the README file.* <b></b>In light of these key caveats, the annotations in this spreadsheet should only be taken to be indicative of the (meta)data availability corresponding to a given reference. The research leading to these results has received funding from the European Union Seventh Framework Programme (FP7/ 2007-2013) under grant agreement no. 309837 (NanoPUZZLES project).
DOI: 10.6084/m9.figshare.25133492.v1
title: Codes and datasets for project HyGAnno

description: HyGAnno is an automated cell type annotation method designed to improve the annotation quality of single-cell ATAC-seq (scATAC-seq) data.HyGAnno transfers cell type information from well-annotated scRNA-seq references to unlabeled scATAC-seq targets by utilizing peak-level information. HyGAnno provides not only cell type annotations but also a reference-target cell graph to assist in identifying cells with low predictions, thereby enhancing the reliability of the cell annotation. HyGAnno stands out for its accuracy in cell annotation and its capacity for interpretable cell embedding, exhibiting robustness against noisy reference data and adaptability to tumor tissues.HyGAnno is developed using R and Python. For more information, please refer our manuscript "HyGAnno: Hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data".<br><br>
DOI: 10.6084/m9.figshare.14465526.v1
title: Cucumis_sativus_Korean_cultivar

description: Korean cucumber cultivar genome analysis
DOI: 10.6084/m9.figshare.22106048.v1
title: unicox.txt

description: TCGA-STAD data for Univariate cox analysis
DOI: 10.6084/m9.figshare.28826624.v1
title: Figure 2 Ratio of disparity tuning map

description: All data from Figure 2 for the map, contours, fits, receptive locations for all cells.
DOI: 10.25946/26300929.v1
title: Stage 2 Student survey data for A Study on Australian Performance-Based Funding for Domestic Bachelor Level Undergraduate Students

description: This projected explored the use of Performance Based Funding (PBF) in Australia. This Grounded Theory study identified a gap in existing literature concerning the views of students towards PBF in Australia. This gap in current knowledge was identified as the problem to be addressed. This research used a two-stage sequential mixed method approach, which involved qualitative interviews and a quantitative survey. The surveys included senior and experienced university staff (some retired) and these interviews sought to capture data rich content from these experienced and expert sources to guide the second stage of the study. The quantitative survey was derived from both the reviewed literature and the first stage qualitative interviews. A representative student sample was surveyed to provide data for analysis. Some staff data was included however, this data was not significant and not statistically relevant.

The results from the survey were compared and synthesized against the reviewed literature and the interview results. Conclusions and recommendations were prepared from the survey results and areas for future research were identified from the study.
DOI: 10.6084/m9.figshare.16940200.v1
title: Supplementary Material for: Impact of the COVID-19 pandemic and related lockdown measures on lifestyle behaviors and wellbeing in children and adolescents with severe obesity

description: Introduction: COVID-19 lockdown measures have large impact on lifestyle behaviors and wellbeing of children. The aim of this mixed-methods study was to investigate the impact of COVID-19 lockdown measures on eating styles and behaviors, physical activity (PA), screen time, and health-related quality of life (HRQoL) in children (0-18 years) with severe obesity. Methods: During the first COVID-19 wave (April 2020), validated questionnaires were completed and semi-structured telephone interviews were conducted with parents of children with severe obesity (adult BMI-equivalent ≥35kg/m2) and/or with the children themselves. Changes in pre-pandemic versus lockdown scores of the Dutch Eating Behavior Questionnaire Children (DEBQ-C), Pediatric Quality of Life Inventory (PedsQLTM), and Dutch PA Questionnaire were assessed. Qualitative analyses were performed according to the Grounded Theory. Results: Ninety families were approached of which 83 families were included. Characteristics of the included children were: mean age 11.2 ± 4.6 years, 52% female, mean BMI SD-score +3.8 ± 1.0. Emotional, restrained, and external eating styles, HRQoL, and (non-educational) screen time did not change on group level (all p&gt;0.05). However, weekly PA decreased (mean difference -1.9 hours/week, p=0.02), mostly in adolescents. In the majority of children, mean weekly PA decreased to ≤2 hours/week. Children with high emotional and external eating scores during lockdown or pre-existent psychosocial problems had the lowest HRQoL (p&lt;0.01). Qualitative analyses revealed an increased demand for food in a significant proportion of children (n=21), mostly in children &lt;10 years (19/21). This was often attributed to loss of daily structure and perceived stress. Families who reported no changes (n=15) or improved eating behaviors (n=11) attributed this to already existing strict eating schemes that they kept adhering to during lockdown. Conclusion: This study shows differing responses to COVID-19 lockdown measures in children with severe obesity. On group level, PA significantly decreased and in substantial minorities eating styles and HRQoL deteriorated. Children with pre-existent psychosocial problems or pre-pandemic high external or emotional eating scores were most at risk. These children and their families should be targeted by health care professionals to minimize negative physical and mental health consequences.
DOI: 10.6084/m9.figshare.17258507.v3
title: TPM in the TCGA training cohort

description: TPM in the TCGA training cohort
DOI: 10.6084/m9.figshare.28562690.v1
title: 代谢组数据

description: 肠道菌群失调是炎症性肠病 （IBD） 发病机制和进展的关键因素。Darutigenol （DL） 是一种口服生物利用度有限的天然化合物，已显示出强大的抗炎特性。其对结肠炎的治疗效果和微生物群依赖性机制仍未得到探索。确定有助于 DL 介导的 DSS 诱导改善的关键肠道微生物种类和代谢物 结肠炎，我们采用了多种方法，包括 16S rRNA 测序、抗生素治疗和粪便微生物群移植 （FMT）。此外，进行了代谢组学和转录组学分析，以及特定细菌和代谢物的靶向给药，以探索 DL 减轻小鼠结肠炎严重程度的微生物群依赖性机制。
DOI: 10.6084/m9.figshare.12714152.v2
title: change detection datasets of dual-phase remote images

description: The dataset has 370 samples in the training set and 160 samples in the test set. The sample size is 572*572, time series length of the sample is 2, and the bands are red, green, blue and near-infrared bands. The original data is the Landsat data on July 15, 2009 and July 3, 2019 in the middle and lower reaches of the Tahe River. The resolution of the data is 30m. The semantic change categories are changes between building, road, farmland, water body, desert and woodland. There are 27 categories.
DOI: 10.6084/m9.figshare.25425235.v1
title: Source Code and Datasets for ECML-PKDD Submission: "LayeredLiNGAM: A Practical and Fast Method for Learning a Linear Non-Gaussian Structural Equation Model"

description: Experimental source code and datasets
DOI: 10.6084/m9.figshare.13435094.v5
title: Raw Sequence Data

description: <b></b>To verify some of the significant CpGs from the genome-wide analysis, we selected the target CpGs at the warfarin-associated genes. Thereafter, we used pyrosequencing to detect the methylation levels of CpGs with more samples in the validation cohort (low-dose group: 37; medium-dose group: 59; and high-dose group: 35). DNA was extracted from peripheral blood cells using the TIANamp Blood DNA Kit (Cat. #DP318, Tiangen, China) and DNA bisulfite conversion was conducted in a bisulfite batch with the EpiTect Bisulfite Kit (Cat. #59104, Qiagen, German); then, the converted DNA used as the template for PCR amplification. All primers for PCR and sequencing were designed by PyroMark Assay Design 2.0 Software (version 2.0.01.15; Qiagen, German). Pyrosequencing was carried out by PyroMark Q24 (Qiagen, German). The EpiTect Control DNA and Control DNA Set(Cat. #59695, QIAGEN; German) was used in the pyrosequencing. In addition,the PyroMark Q24 Validation Oligo(Cat. #979203, QIAGEN; German) was also used to check the performance of the PyroMark Q24 system.
DOI: 10.6084/m9.figshare.26713897.v1
title: Additional file 1 of Lions & sea lions & bears, oh my: utilizing museum specimens to study the ossification sequence of carnivoran taxa

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.6120536.v1
title: Supplementary Material for: Endocranial Development in the Coyote (<b><i>Canis latrans</i></b>) and Gray Wolf (<b><i>Canis lupus</i></b>): A Computed Tomographic Study

description: The purpose of this study was to examine the pattern of postnatal brain growth in two wild canid species: the coyote (<i>Canis latrans</i>) and gray wolf (<i>Canis lupus</i>). Adult regional and total brain volume differences were also compared between the two species as well as within each species by sex. Three-dimensional virtual endocasts of endocranial airspace were created from computed tomography scans of 52 coyote skulls (28 female, 24 male; 1 day to 13.4 years) and 46 gray wolf skulls (25 female, 21 male; 1 day to 7.9 years). Age was known in coyotes or estimated from dentition patterns in wolves. The 95% asymptotic growth of the endocranium is completed by 21 weeks in male and 17.5 weeks in female coyotes and by 27 weeks in male and 18.5 weeks in female wolves. These ages are well before age at first reproduction (coyote – 40.4 weeks; wolf – 91.25 weeks). Skull growth as measured by centroid size lags behind endocranial growth but is also completed before sexual maturity. Intra- and interspecific comparisons of brain volumes in the adult wolves and coyotes revealed that relative anterior cerebrum (AC) volume was greater in males than females in both species. Relative brain size was greater in the coyote than in the wolf as was relative cerebrum volume. However, relative AC volume and relative cerebellum and brainstem volume was greater in the wolf than coyote. One explanation for the increased AC volume in males compared to females may be related to the role of social information processing. However, additional data are needed to determine the correspondence between regional volumes and functional differences either between or within these species. Nonetheless, these findings provide important baseline data for further studies on wild canid brain variations and development.
DOI: 10.6084/m9.figshare.24321127.v2
title: <b>A genome-wide survey details the genetic diversity and adaptability of native sheep breeds from diverse climates</b>

description: This research aimed at investigating the genetic diversity levels and adaptability of native sheep breeds sampled from different climatic regions. To maintain the integrity of genetic diversity within each breed, meticulous care was taken to ensure that samples were derived from genetically distinct individuals. The sampling procedure involved puncturing the jugular veins of individual animals to extract blood samples. The whole processes of DNA extraction, genotyping, and the transformation of raw signals into the Ovine50K genotype were entrusted to Neogen Company Limited. The company employed the Infinium assay protocol for these procedures. Genotypic determinations were made using the ovine Oar_v3.1 assembly, which served as the reference genome
DOI: 10.6084/m9.figshare.20337627.v1
title: simulation data.csv

description: this is the simulated data of fiber temperature.
DOI: 10.6084/m9.figshare.25107044.v1
title: Gridded annual summaries of active fire detections, forest loss, and climate variation in the African tropics

description: These data characterize active fires from MODIS, forest loss from the Global Forest Change dataset, and meteorological variables from TerraClimate. Data are summarized by 0.05 degree grid cell and by year. These data support the analyses in the following paper, which is under review in Geophysical Research Letters:Wimberly, M. C., Wanyama, D., Doughty, R., Piero, H., and Crowell, S. In Review. Increasing Fire Activity in African Tropical Forests is Associated with Land Use and Climate Change. Geophysical Research Letters.This archive contains the following files:tropical_forest_west_central_africa.shp: Ecoregion boundaries<br>tropical_forest_west_central_africa.shx: Ecoregion boundaries<br>tropical_forest_west_central_africa.dbf: Ecoregion boundaries<br>tropical_forest_west_central_africa.prj: Ecoregion boundaries<br>Annual_africa_modis_fd.tif: Annual count of MODIS active fires<br>AfricaHGFCAnnualLoss2001to2021.tif: Annual count of Global Forest Change forest loss pixels<br>ForestMask2000Prop.tif: Mean Global Forest Change forest cover in 2000<br>ppt_mean: Annual sum of TerraClimate precipitation<br>vpd_mean: Annual mean of TerraClimate vapor pressure deficit<br>tmax_mean: Annual mean of TerraClimate maximum temperature<br><br><br><br><br>
DOI: 10.6084/m9.figshare.21224918.v2
title: Pilot Study Participant Feedback

description: This dataset provides feedback from the pilot study participants regarding language, clarity of questions, length of the questionnaire and user friendliness.
DOI: 10.6084/m9.figshare.28334438.v2
title: Datasets

description: This dataset contains the raw data used in the article “Novel field experiment on alkalinity enhancement in intertidal environments – a trailblazer for natural climate solutions” to be published in the Journal of Geophysical Research - Biogeoscience.The data is provided as “Fig*.csv or Tab*.csv” files, processed in Excel, and organised following the structure of the figures presented in the manuscript (e.g., Fig3.csv corresponds to data shown in Fig.3).
DOI: 10.6084/m9.figshare.14290294.v1
title: Cluster and simultaneity of modifiable risk factors for cardiovascular diseases in adolescents of Southeast Brazil

description: Abstract Aim: This study aimed to evaluate the cluster of the five major modifiable risk factors for cardiovascular diseases (CVD) and their associated factors and to identify patterns of concurrency of modifiable obesogenic risk factors associated with overweight in Brazilian adolescents. Methods: A survey was conducted (2015) with 1,055 (boys, n = 475; girls, n = 580) high school (public and private schools) adolescents (14-20 years old) in a medium-sized city in Southeast Brazil. The observed prevalence ratio (O) for the expected (E) risk factors (smoking, alcohol, insufficient physical activity, sedentary behavior, and poor diet) greater than one (O/E &gt; 1) was considered as a cluster. We use multinomial and binary logistic regressions (stratified by sex) in the analyzes. Results: Almost 30% of adolescents had three or more risk factors (no factor = 5.4%). The five risk factors tended to cluster in boys (O/E = 2.5; 95% CI = 1.6-3.5). In both sexes, smoking and alcohol consumption persisted in O/E &gt; 1 ratio. Conclusions: Boys showed a consistent pattern of association for risk factors. Overweight was associated with pairs of obesogenic risk factors in both sexes. The results indicate the need for health interventions that consider the cluster and the simultaneity of risk factors for CVD among Brazilian youth.
DOI: 10.6084/m9.figshare.14306070.v1
title: Educational Speech-Language Pathology in the curricula of Speech-Language Pathology Programs in Brazil

description: ABSTRACT Purpose: to investigate the inclusion of Educational Speech-Language Pathology in the curricula of Speech-Language Pathology programs in Brazil. Methods: a descriptive, exploratory, documentary research based on information from public domain documents. Data were collected from the search on the website of the Conselho Federal de Fonoaudiologia, each institution’s curricula being analyzed. Results: a total of 72 higher education institutions in Brazil, offering a Speech-Language Pathology bachelor program, was found. Of those that had their curricula available on the website, 34 offered at least one course on Educational Speech-Language Pathology. In most institutions, such courses had a study load of 40 hours or more, and 87.88% were exclusively theoretical. Conclusion: the presence of Educational Speech-Language Pathology in the curricula represents a progress. However, there is still a long way to go and there are many adjustments to be made for the speech-language pathologist’s training to satisfactorily include the field of education.
DOI: 10.6084/m9.figshare.13109501.v1
title: Raw data of feed and nutrient digestibility

description: feed and nutrient digestibility<br>
DOI: 10.6084/m9.figshare.22298938.v1
title: final_db.RDS

description: Data used in Murphy et al. (2023) paper titled " Mule deer fawn recruitment dynamics in an energy disturbed landscape" used for the generalised additive modeling.
DOI: 10.6084/m9.figshare.3554496.v1
title: Appendix G. Verification of the HMM representation being an approximate representation of the example HSMM given in the section Extensions: Other formulations of the state process.

description: Verification of the HMM representation being an approximate representation of the example HSMM given in the section Extensions: Other formulations of the state process.