cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8480180
title: Additional file 1: of Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methods

description: This file contains four Microsoft Excel Sheets with additional information. Table S1. describes the interpretation criteria, dilution ranges and antimicrobial disk contents used for phenotypic susceptibility testing. Table S2. presents the results of phenotypic susceptibility tests and whole genome sequence genotyping. Classification categories against the broth microdilution reference are also presented for each isolate; True Negative (TN), True Positive (TP), False Negative (FN) and False Positive (FP). Table S3. presents European Read Archive run accession numbers for each sequences isolate. Table S4. presents the frequency of isolates with each reference resistance gene sequence detected or fully assembled by ARIBA. (XLSX 144 kb)
DOI: 10.6084/m9.figshare.8480180.v1
title: Additional file 1: of Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methods

description: This file contains four Microsoft Excel Sheets with additional information. Table S1. describes the interpretation criteria, dilution ranges and antimicrobial disk contents used for phenotypic susceptibility testing. Table S2. presents the results of phenotypic susceptibility tests and whole genome sequence genotyping. Classification categories against the broth microdilution reference are also presented for each isolate; True Negative (TN), True Positive (TP), False Negative (FN) and False Positive (FP). Table S3. presents European Read Archive run accession numbers for each sequences isolate. Table S4. presents the frequency of isolates with each reference resistance gene sequence detected or fully assembled by ARIBA. (XLSX 144 kb)
DOI: 10.5281/zenodo.10635660
title: impatiens_balsamina_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10635661
title: impatiens_balsamina_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.20014606
title: Comparison of nerve combing and percutaneous radiofrequency thermocoagulation in the treatment for idiopathic trigeminal neuralgia

description: ABSTRACT INTRODUCTION: Idiopathic trigeminal neuralgia (ITN) is a common pain disease in elderly people. Many methods have been used to alleviate the pain of patients, but few studies in the literature have compared the effect of nerve combing and percutaneous radiofrequency thermocoagulation. OBJECTIVE: The purpose of this study was to describe and evaluate the clinical outcome of idiopathic trigeminal neuralgia after nerve combing (NC) and compare them with those obtained using percutaneous radiofrequency thermocoagulation (RF). METHODS: The study included 105 idiopathic trigeminal neuralgia patients with similar symptom, age and underlying disease, which were divided into two groups. One group was treated by nerve combing (50 patients), the other by RF (55 cases). All patients were considered medical failures prior to the surgeries. A questionnaire was used to assess the long-term outcomes: pain relief, recurrence, complication and need for additional treatment. RESULTS: The median duration of follow-up in both groups was 90 months. Satisfactory relief was noted in 41 patients (82%), 5 patients (10%) initially experienced pain relief, then recurred, and four patients (8%) were designated poor among the group NC. In the group RF, satisfactory relief was noted in 42 patients (76.4%). There were eight "pain free with recurrence patients (14.5%) and 5 poor cases (9.1%). No statistically significant differences existed in the outcomes between both groups (p &gt; 0.05). Postoperative morbidity included dysesthesia, diplopia, partial facial nerve palsy, hearing loss, tinnitus, cerebrospinal fluid leak, meningitis and mortality. CONCLUSION: Nerve combing and RF are both satisfactory treatment strategies for patients with ITN. Because of the higher risk of sensory morbidity and surgical risk as open surgery, RF is preferred as the recommended procedure for patients with ITN.
DOI: 10.6084/m9.figshare.8480240.v1
title: MOESM1 of Molecular identification and expression of sesquiterpene pathway genes responsible for patchoulol biosynthesis and regulation in Pogostemon cablin

description: Additional file 1: Table S1. Primers used for clone and qRT-PCR.
DOI: 10.6084/m9.figshare.8480243
title: MOESM2 of Molecular identification and expression of sesquiterpene pathway genes responsible for patchoulol biosynthesis and regulation in Pogostemon cablin

description: Additional file 2: Table S2. Overview of 74 transcripts involved sesquiterpene biosynthesis in P. cablin.
DOI: 10.6084/m9.figshare.20014606.v1
title: Comparison of nerve combing and percutaneous radiofrequency thermocoagulation in the treatment for idiopathic trigeminal neuralgia

description: ABSTRACT INTRODUCTION: Idiopathic trigeminal neuralgia (ITN) is a common pain disease in elderly people. Many methods have been used to alleviate the pain of patients, but few studies in the literature have compared the effect of nerve combing and percutaneous radiofrequency thermocoagulation. OBJECTIVE: The purpose of this study was to describe and evaluate the clinical outcome of idiopathic trigeminal neuralgia after nerve combing (NC) and compare them with those obtained using percutaneous radiofrequency thermocoagulation (RF). METHODS: The study included 105 idiopathic trigeminal neuralgia patients with similar symptom, age and underlying disease, which were divided into two groups. One group was treated by nerve combing (50 patients), the other by RF (55 cases). All patients were considered medical failures prior to the surgeries. A questionnaire was used to assess the long-term outcomes: pain relief, recurrence, complication and need for additional treatment. RESULTS: The median duration of follow-up in both groups was 90 months. Satisfactory relief was noted in 41 patients (82%), 5 patients (10%) initially experienced pain relief, then recurred, and four patients (8%) were designated poor among the group NC. In the group RF, satisfactory relief was noted in 42 patients (76.4%). There were eight "pain free with recurrence patients (14.5%) and 5 poor cases (9.1%). No statistically significant differences existed in the outcomes between both groups (p &gt; 0.05). Postoperative morbidity included dysesthesia, diplopia, partial facial nerve palsy, hearing loss, tinnitus, cerebrospinal fluid leak, meningitis and mortality. CONCLUSION: Nerve combing and RF are both satisfactory treatment strategies for patients with ITN. Because of the higher risk of sensory morbidity and surgical risk as open surgery, RF is preferred as the recommended procedure for patients with ITN.
DOI: 10.6084/m9.figshare.8480210
title: Additional file 1: of Comparative proteomic analysis reveals drug resistance of Staphylococcus xylosus ATCC700404 under tylosin stress

description: Proteins of S. xylosus in response to tylosin treatment by quantitative proteomic method. Comparison between S. xylosus ATCC700404 and the proteins of S. xylosus treated with 0.25â Îźg/mL tylosin analyzed by iTRAQ. 1765 proteins were detected. (XLSX 207 kb)
DOI: 10.6084/m9.figshare.8480210.v1
title: Additional file 1: of Comparative proteomic analysis reveals drug resistance of Staphylococcus xylosus ATCC700404 under tylosin stress

description: Proteins of S. xylosus in response to tylosin treatment by quantitative proteomic method. Comparison between S. xylosus ATCC700404 and the proteins of S. xylosus treated with 0.25â Îźg/mL tylosin analyzed by iTRAQ. 1765 proteins were detected. (XLSX 207 kb)
DOI: 10.6084/m9.figshare.20014558
title: Prevalence of mitochondrial DNA mutations in sporadic patients with nonsyndromic sensorineural hearing loss

description: ABSTRACT INTRODUCTION: Several mitochondrial DNA mutations have been reported to be associated with nonsyndromic hearing loss in several families. However, little is known about the prevalence of these mutations in sporadic patients with nonsyndromic sensorineural hearing loss. OBJECTIVE: The purpose of our study was to investigate the incidence of these mitochondrial DNA mutations in such population. METHODS: A total of 178 sporadic patients with nonsyndromic sensorineural hearing loss were enrolled in this study. Genomic DNA was extracted from the peripheral blood sample. We employed the SNaPshot(r) sequencing method to detect five mitochondrial DNA mutations, including A1555G and A827G in 12S rRNA gene and A7445G, 7472insC, and T7511C in tRNASerUCN gene. Meanwhile, we used polymerase chain reaction and sequenced the products to screen GJB2 gene mutations in patients carrying mitochondrial DNA mutations. RESULTS: We failed to detect the presence of A1555G mutation in 12S rRNA gene, and of A7445G, 7472insC, T7511C mutations in tRNASerUCN gene in our population. However, we found that 6 patients (3.37%) were carriers of a homozygous A827G mutation and one of them also carried homozygous GJB2 235delC mutation. CONCLUSION: Our findings in the present study indicate that even in sporadic patients with nonsyndromic sensorineural hearing loss, mitochondrial DNA mutations might also contribute to the clinical phenotype.
DOI: 10.6084/m9.figshare.8480243.v1
title: MOESM2 of Molecular identification and expression of sesquiterpene pathway genes responsible for patchoulol biosynthesis and regulation in Pogostemon cablin

description: Additional file 2: Table S2. Overview of 74 transcripts involved sesquiterpene biosynthesis in P. cablin.
DOI: 10.6084/m9.figshare.8480240
title: MOESM1 of Molecular identification and expression of sesquiterpene pathway genes responsible for patchoulol biosynthesis and regulation in Pogostemon cablin

description: Additional file 1: Table S1. Primers used for clone and qRT-PCR.
DOI: 10.6084/m9.figshare.13192515
title: Additional file 1 of Multiomics profiling of primary lung cancers and distant metastases reveals immunosuppression as a common characteristic of tumor cells with metastatic plasticity

description: Additional file 1: Supplementary Tables S1-S8.
DOI: 10.6084/m9.figshare.10053308
title: Data of characterizations from The utilization of red mud waste as industrial honeycomb catalyst for selective catalytic reduction of NO

description: This file contains the data of catalytic characterizations, including BET, XRD, SEM, TEM, TG, XRF and NH3-TPD.
DOI: 10.6084/m9.figshare.13192479.v1
title: Additional file 3 of LncRNA IMFlnc1 promotes porcine intramuscular adipocyte adipogenesis by sponging miR-199a-5p to up-regulate CAV-1

description: Additional file 3 : Table S3. Information of the differently expressed lncRNAs.
DOI: 10.6084/m9.figshare.8480216
title: Additional file 2: of Comparative proteomic analysis reveals drug resistance of Staphylococcus xylosus ATCC700404 under tylosin stress

description: Altered proteins of S. xylosus in response to tylosin treatment by quantitative proteomic method. Comparison between S. xylosus ATCC700404 and the proteins of S. xylosus treated with 0.25â Îźg/mL tylosin analyzed by iTRAQ. Based on a fold-change of &gt;1.2 or &lt; 0.8(P-value&lt;0.05), 155 proteins significantly displayed differential expression. (XLSX 2612 kb)
DOI: 10.6084/m9.figshare.10053311.v1
title: Data of experiments from The utilization of red mud waste as industrial honeycomb catalyst for selective catalytic reduction of NO

description: This file contains the raw data of experiments in the paper.
DOI: 10.6084/m9.figshare.8480216.v1
title: Additional file 2: of Comparative proteomic analysis reveals drug resistance of Staphylococcus xylosus ATCC700404 under tylosin stress

description: Altered proteins of S. xylosus in response to tylosin treatment by quantitative proteomic method. Comparison between S. xylosus ATCC700404 and the proteins of S. xylosus treated with 0.25â Îźg/mL tylosin analyzed by iTRAQ. Based on a fold-change of &gt;1.2 or &lt; 0.8(P-value&lt;0.05), 155 proteins significantly displayed differential expression. (XLSX 2612 kb)
DOI: 10.14473/csda/nnne9j/zyjy2e
title: NS_1406_DataFile_bez_jmen.tab

description: Data
DOI: 10.14473/csda/nnne9j/3ucvdb
title: PR02_V1406.pdf

description: Veřejné mínění o interrupci, eutanazii a trestu smrti – červen 2014. Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.20014706.v1
title: Effect of sublingual immunotherapy on platelet activity in children with allergic rhinitis

description: Abstract Introduction: The role of platelet activation in allergic inflammation is receiving increasing attention. Sublingual immunotherapy for allergic rhinitis can modify the immunological process to an allergen, rather than simply treating symptoms. Objective: The aim of this study was to explore the role of platelet activation during sublingual immunotherapy in children with allergic rhinitis. Methods: Forty-two House Dust Mite - sensitized children with allergic rhinitis were enrolled and received House Dust Mite allergen extract for sublingual immunotherapy or placebo. Serum of different time points during treatment was collected and used for detection of Platelet Factor-4 and Beta-Thromboglobulin concentration by Enzyme-Linked Immuno Sorbent Assay. Results: Our data showed decreased expression of Platelet Factor-4 and Beta-Thromboglobulin protein after one year's sublingual immunotherapy. In addition, the decrease of symptom scores and serum Platelet Factor-4 and Beta-Thromboglobulin protein concentrations was positively related. Conclusion: During sublingual immunotherapy, platelet activation was inhibited significantly. Our results might indicate that inhibition of platelet activation within the systemic circulation is an important mechanism during sublingual immunotherapy.
DOI: 10.6084/m9.figshare.14247593
title: Additional file 2 of Protein–protein interaction analysis reveals a novel cancer stem cell related target TMEM17 in colorectal cancer

description: Additional file 2: Table S1. The HALLMARK pathway analysis of patients’ genomic profiles in the CIT data set.
DOI: 10.6084/m9.figshare.20014558.v1
title: Prevalence of mitochondrial DNA mutations in sporadic patients with nonsyndromic sensorineural hearing loss

description: ABSTRACT INTRODUCTION: Several mitochondrial DNA mutations have been reported to be associated with nonsyndromic hearing loss in several families. However, little is known about the prevalence of these mutations in sporadic patients with nonsyndromic sensorineural hearing loss. OBJECTIVE: The purpose of our study was to investigate the incidence of these mitochondrial DNA mutations in such population. METHODS: A total of 178 sporadic patients with nonsyndromic sensorineural hearing loss were enrolled in this study. Genomic DNA was extracted from the peripheral blood sample. We employed the SNaPshot(r) sequencing method to detect five mitochondrial DNA mutations, including A1555G and A827G in 12S rRNA gene and A7445G, 7472insC, and T7511C in tRNASerUCN gene. Meanwhile, we used polymerase chain reaction and sequenced the products to screen GJB2 gene mutations in patients carrying mitochondrial DNA mutations. RESULTS: We failed to detect the presence of A1555G mutation in 12S rRNA gene, and of A7445G, 7472insC, T7511C mutations in tRNASerUCN gene in our population. However, we found that 6 patients (3.37%) were carriers of a homozygous A827G mutation and one of them also carried homozygous GJB2 235delC mutation. CONCLUSION: Our findings in the present study indicate that even in sporadic patients with nonsyndromic sensorineural hearing loss, mitochondrial DNA mutations might also contribute to the clinical phenotype.
DOI: 10.14473/csda/nnne9j/7seolt
title: PR12_V1406.pdf

description: Spokojenost se zaměstnáním a změna zaměstnání – červen 2014. Tisková zpráva CVVM.
DOI: 10.14473/csda/nnne9j/rdbr3u
title: PR08_V1406.pdf

description: Spokojenost s životem – červen 2014. Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.12143874
title: Additional file 1 of Characterisation of extraembryonic endoderm-like cells from mouse embryonic fibroblasts induced using chemicals alone

description: Additional file 1 : Figure S1. Small molecules induced mouse fibroblasts to transform into ciXEN cells. Expression of Epcam (a) and Cxcr4 (b) and mesenchymal markers (c) during chemical induction as measured by qPCR. d Western blot analysis for the expression of E-cadherin and Vimentin during chemical induction. e Morphological changes of MNFs induced by chemicals and bFGF (bar, 100 μm). f Numbers of cell clones from different numbers of initial cells: 3w, 4w, and 5w. g Co-immunostaining for the expression of Sox17 and Foxa2 in MNF-derived clone (bar, 50 μm). * p &lt; 0.05, ** p &lt; 0.01, *** p &lt; 0.001. Mean ± SEM, t-test and two-way ANOVA analysis, n ≥ 3. Figure S2. Characteristics of ciXEN cells at different passages. qPCR results for the expression of Epcam, Pdgfra, (a) and Cxcr4 (b) in ciXEN cells at p5. c The ultrastructure of MEFs and ciXEN cells. The thin arrow shows the endoplasmic reticulum (white) in MEFs and the cilium (black) in ciXEN cells; the thick arrow shows the mitochondria in ciXEN cells. (bar, 2 μm and 1 μm). d Cell morphologies of ciXEN cells at p5, p10, p20, p30 (bar, 100 μm). e Karyotype analysis of MEFs and ciXEN cells at p5, p15, and p30. mRNA levels of fibroblast genes (Prrx1, Pdgfrb, Col1a1, and Thy1), epithelial genes (Ocln and Cdh1) (f), XEN markers (Sox17, Foxa2, Gata4, and Gata6) (g), and pluripotent genes (Oct4, Sox2, and Nanog) (h). p15: passage 15; p20: passage 20. * p &lt; 0.05, ** p &lt; 0.01, *** p &lt; 0.001. Mean ± SEM, t-test and two-way ANOVA analysis, n = 3. Figure S3. The metabolic patterns of ciXEN cells. a OCR of MEFs and ciXEN cells. b Total ATP of MEFs and ciXEN cells. Expression of Glut1 (c) and Pfk1, Ldha, and Hk2 (d) during chemical induction as measured by qPCR. e Numbers of cell clones under different treatment conditions: MEFs + VPACRFE and MEFs + VPACRFE + PS48. * p &lt; 0.05, ** p &lt; 0.01, *** p &lt; 0.001. Mean ± SEM, t-test, n = 3. Figure S4. PCR/qPCR analysis for the expression of hepatic genes during the induction of iHeps. * p &lt; 0.05, ** p &lt; 0.01, *** p &lt; 0.001. Mean ± SEM, t-test, n = 3. Figure S5. The characteristics of iXEN cells and their potential to differentiate into iHeps. a Experimental procedures of ciXEN cells cultured in different conditions: 1% FBS and 10% FBS. b The morphologies of the cells cultured in the medium containing 1% FBS (left) and 10% FBS (right) (bar, 50 μm). c qPCR results for the expression of hepatic markers in the cells with 1% FBS and 10% FBS. d EdU assay for the proliferative ability of MEFs, ciXEN cells and iXEN cells (bar, 50 μm). e Morphology of iHeps induced from iXEN cells (bar, 100 μm). f mRNA levels of hepatic genes, XEN genes (Sox17, Foxa2, Gata4, and Gata6) and Sox2, as measured by qPCR. g Co-immunostaining for the expression of Afp and Hnf4a, Alb and Foxa3, Asgpr1 and E-cadherin (bar, 50 μm). h PAS staining of iXEN cell-derived iHeps (bar, 100 μm). * p &lt; 0.05, ** p &lt; 0.01, *** p &lt; 0.001. Mean ± SEM, t-test, n = 3.
DOI: 10.6084/m9.figshare.20014643
title: Outcome of different facial nerve reconstruction techniques

description: Abstract Introduction: There is no technique of facial nerve reconstruction that guarantees facial function recovery up to grade III. Objective: To evaluate the efficacy and safety of different facial nerve reconstruction techniques. Methods: Facial nerve reconstruction was performed in 22 patients (facial nerve interpositional graft in 11 patients and hypoglossal-facial nerve transfer in another 11 patients). All patients had facial function House-Brackmann (HB) grade VI, either caused by trauma or after resection of a tumor. All patients were submitted to a primary nerve reconstruction except 7 patients, where late reconstruction was performed two weeks to four months after the initial surgery. The follow-up period was at least two years. Results: For facial nerve interpositional graft technique, we achieved facial function HB grade III in eight patients and grade IV in three patients. Synkinesis was found in eight patients, and facial contracture with synkinesis was found in two patients. In regards to hypoglossal-facial nerve transfer using different modifications, we achieved facial function HB grade III in nine patients and grade IV in two patients. Facial contracture, synkinesis and tongue atrophy were found in three patients, and synkinesis was found in five patients. However, those who had primary direct facial-hypoglossal end-to-side anastomosis showed the best result without any neurological deficit. Conclusion: Among various reanimation techniques, when indicated, direct end-to-side facial-hypoglossal anastomosis through epineural suturing is the most effective technique with excellent outcomes for facial reanimation and preservation of tongue movement, particularly when performed as a primary technique.
DOI: 10.6084/m9.figshare.20014663
title: Association of the C47T polymorphism in superoxide dismutase gene 2 with noise-induced hearing loss: a meta-analysis

description: Abstract Introduction Currently, there is limited information about the relationship between manganese superoxide dismutase (sod2) c47t polymorphism and susceptibility to noise-induced hearing loss (NIHL). Objective The aim of this meta-analysis was to clarify the association between SOD2 C47T polymorphism and NIHL. Methods A search in PubMed and Web of Science was performed to collect data. All full-text, English-written studies containing sufficient and complete case-and-control data about the relationship between SOD2 C47T polymorphism and NIHL were included. Three eligible studies, comprising 1094 subjects, were identified. pooled odds ratios (ORs) and 95% confidence intervals (CI) were calculated to evaluate the strength of the association between SOD2 C47T polymorphism and NIHL. Results No significant association between C47T polymorphism and risk of NIHL was found with the following combinations: T vs. C (OR = 0.83; 95% CI = 0.63–1.09); TT vs. CC (OR = 0.49; 95% CI = 0.22–1.09); CT vs. CC (OR = 0.54; 95% CI = 0.25–1.17); TT vs. CC + CT (OR = 0.82; 95% CI = 0.50–1.32); CC vs. TT + TC (OR = 0.49; 95% CI = 0.23–1.04). However, in subgroup analysis, a significant association was found for TT vs. CC + CT (OR = 0.77; 95% CI = 0.42–1.41) in the Chinese population. Conclusion The present meta-analysis suggests that SOD2 C47T polymorphism is significantly associated with increased risk of NIHL in the Chinese population. Further large and well-designed studies are needed to confirm this association.
DOI: 10.14473/csda/nnne9j/6eiipc
title: PR03_V1406.pdf

description: Důvěra ústavním institucím v červnu 2014. Tisková zpráva CVVM.
DOI: 10.14473/csda/nnne9j/8pb7ez
title: PR10_V1406.pdf

description: Veřejné mínění o problematice HIV/AIDS – červen 2014. Tisková zpráva CVVM.
DOI: 10.14473/csda/nnne9j/rpjkih
title: PR07_V1406.pdf

description: Občané o kampani k volbám do Evropského parlamentu – červen 2014. Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.10053308.v1
title: Data of characterizations from The utilization of red mud waste as industrial honeycomb catalyst for selective catalytic reduction of NO

description: This file contains the data of catalytic characterizations, including BET, XRD, SEM, TEM, TG, XRF and NH3-TPD.
DOI: 10.14473/csda/nnne9j/9yahfo
title: PR04_V1406.pdf

description: Postoj české veřejnosti k dění na Ukrajině – červen 2014. Tisková zpráva CVVM.