cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7771184.v1
title: Real-time deformability cytometry reference data

description: This dataset consists of four exemplary real-time fluorescence and deformability cytometry measurements. The HDF5-files can be opened with dclab [1] or Shape-Out [2].<br><br><b>calibration_beads.rtdc</b><br>The calibartion beads (8 Peaks, PolyAN) consist of eight bead populations with different mixtures of fluorophores.<br><br><br><b>CD34_HSPC.rtdc</b><br>Hematopoietic stem and progenitor cells (HSPCs) were obtained using apheresis. The cells were tagged with a fluorescently labeled antibody that binds to the CD34 transmembrane protein. CD34-positive HSPCs are gated with `fl3_max &gt; 90`. Set `area_ratio &lt; 1.05` to remove aggregates. Data were used in [3].<br><br><br><b>leukocytes.rtdc</b><br>The leukocyte population (white blood cells) of this blood sample can be visualized by setting `aspect &lt; 2` and `area_ratio &lt; 1.05`. For more information, see e.g. [4].<br><br><br><b>reticulocytes.rtdc</b><br>Blood contains mostly red blood cells (RBCs) and about 1% reticulocytes (which develop into mature RBCs). Reticulocytes contain ribosomal RNA which was stained with Syto13 for this measurement. Set `area_ratio &lt; 1.05` to remove aggregates. Data were used in [3].<br><br><br>[1] https://github.com/ZellMechanik-Dresden/dclab<br><br>[2] https://github.com/ZellMechanik-Dresden/ShapeOut<br><br>[3] Rosendahl et al., "Real-time fluorescence and deformability cytometry". Nature Methods, 15(5):355–358, 2018. doi:10.1038/nmeth.4639.<br><br>[4] Toepfner et al., "Detection of human disease conditions by single-cell morpho-rheological phenotyping of whole blood". eLife, 7:e29213, 2017. doi:10.1101/145078.<br><br><br>SHA256 sums:<br>08c2ef13eed903ef0f9e451727ab8484df09b5d3b39227dab726e0164dcbe244 calibration_beads.rtdc<br>663b44a9db88d85996500045489e37a317cf115719223a531d617f8e3d450e79 CD34_HSPC.rtdc<br>68bd538b42ffb990f1db52d5f3b21f37c9aff31208ab284f3910fd6872c40fdb leukocytes.rtdc<br>5c323ea75bf7eeb2a28d922730772d50270dd872d6957e60d6062663f3628fb3 reticulocytes.rtdc
DOI: 10.25373/ctsnet.7771118
title: Southampton Reviews in Cardiothoracic Surgery Chapter Two: Cardiopulmonary Bypass

description: Abdelhadi Ismail of the Southampton University Hospitals Trust in the UK presents an educational series on cardiopulmonary bypass in which he discusses some of the fundamental concepts underlying cardiopulmonary bypass and reviews techniques.The optimal way to memorize a topic is to first classify it, then understand it, then forget it. Once you forget and recall it, you will never forget it again. In this second chapter of the Southampton Reviews in Cardiothoracic Surgery, the authors again focus on the merits and rationale to make memorizing and recalling easier.<br>
DOI: 10.25373/ctsnet.7771118.v2
title: Southampton Reviews in Cardiothoracic Surgery Chapter Two: Cardiopulmonary Bypass

description: Abdelhadi Ismail of the Southampton University Hospitals Trust in the UK presents an educational series on cardiopulmonary bypass in which he discusses some of the fundamental concepts underlying cardiopulmonary bypass and reviews techniques.The optimal way to memorize a topic is to first classify it, then understand it, then forget it. Once you forget and recall it, you will never forget it again. In this second chapter of the Southampton Reviews in Cardiothoracic Surgery, the authors again focus on the merits and rationale to make memorizing and recalling easier.<br>
DOI: 10.25373/ctsnet.7771118.v1
title: Southampton Reviews in Cardiothoracic Surgery: Cardiopulmonary Bypass

description: Abdelhadi Ismail of the Southampton University Hospitals Trust in the UK presents an educational series on cardiopulmonary bypass in which he discusses some of the fundamental concepts underlying cardiopulmonary bypass and reviews techniques.The optimal way to memorize a topic is to first classify it, then understand it, then forget it. Once you forget and recall it, you will never forget it again. In this second chapter of the Southampton Reviews in Cardiothoracic Surgery, the authors again focus on the merits and rationale to make memorizing and recalling easier.<br>
DOI: 10.6084/m9.figshare.7771088
title: Developmental milestones and limited intellectual functioning

description: Developmental milestones of children aged 0-48 months and their IQ, and background characteristics
DOI: 10.6084/m9.figshare.7771088.v1
title: Developmental milestones and limited intellectual functioning

description: Developmental milestones of children aged 0-48 months and their IQ, and background characteristics
DOI: 10.6084/m9.figshare.7771046
title: Raw_bone_mat_files

description: Mat files of raw bone. Computed from uCT scans after preprocessing (Otsu Thresholding and despeckling).
DOI: 10.6084/m9.figshare.7771040
title: Trabecular_graph_mat_files

description: Network models of 100x100x100voxel chunks of trabecular bone. Topological, geometrical, and histomorphometric data included in adjacency list format.
DOI: 10.6084/m9.figshare.7771046.v1
title: Raw_bone_mat_files

description: Mat files of raw bone. Computed from uCT scans after preprocessing (Otsu Thresholding and despeckling).
DOI: 10.6084/m9.figshare.7771040.v1
title: Trabecular_graph_mat_files

description: Network models of 100x100x100voxel chunks of trabecular bone. Topological, geometrical, and histomorphometric data included in adjacency list format.
DOI: 10.6084/m9.figshare.7771043
title: Trabecular_skeleton_mat_files

description: Voronoi skeletons of trabecular bone that is converted into network models
DOI: 10.25380/iastate.7771010
title: Effect of crop rotation on weed biomass and density literature summary

description: The dataset consists of data extracted from a systematic search of peer-reviewed literature using ISI Web of Knowledge (WoS). Searches were conducted using the following Boolean string:<br> <i>("crop rotation*" OR "crop sequence*" OR "multiple cropping*" OR “organic”) AND (management* OR control*) AND ("weed biomass*" OR "weed density*" OR "weed seed bank*") NOT (orchard* OR vineyard* OR agroforestry*)</i><br><br>No geographical or language restrictions were applied to the screening process, and the search period in ISI WoS, in both cases, was “All years” (i.e. 1864-2018). Criteria for inclusion in the database were Articles were published in peer-reviewed journals (as opposed to book chapters or conference abstracts)Articles were based on studies conducted with structured experimental designs in a field settingArticles reported one or both of the following response variables: weed biomass and weed densityStudies included at least one comparison of weed response from a simplified rotation (control) and a diversified rotation (treatment). We restricted our selection process to studies that used harvested crops (i.e., grain, fruit, tuber, root, or forage biomass) and avoided studies where rotational diversity was enhanced only by inclusion of a non-harvested cover crop. A full list of these publications and the PRISMA flow diagram detailing the literature search process can be found included in this database package.<br>This dataset supports the publication: Weisberger D, Nichols V, Liebman M (2019) Does diversifying crop rotations suppress weeds? A meta-analysis. <i>PLoS ONE</i> 14(7): e0219847. https://doi.org/10.1371/journal.pone.0219847<br><b>Version history:</b> v1. article submission dataset; v2. revised dataset; v3. metadata update to include article;<br>
DOI: 10.6084/m9.figshare.7771043.v1
title: Trabecular_skeleton_mat_files

description: Voronoi skeletons of trabecular bone that is converted into network models
DOI: 10.25380/iastate.7771010.v1
title: Effect of crop rotation on weed biomass and density literature summary

description: The dataset consists of data extracted from a systematic search of peer-reviewed literature using ISI Web of Knowledge (WoS). Searches were conducted using the following Boolean strings: ("crop rotation*" OR "crop sequence*" OR "multiple cropping*") AND (management* OR control*) AND ("weed biomass*" OR "weed density*" OR "weed seed bank*") NOT (orchard* OR vineyard* OR agroforestry*) ("crop rotation*" OR "crop sequence*" OR "multiple cropping*" OR “organic”) AND (management* OR control*) AND ("weed biomass*" OR "weed density*" OR "weed seed bank*") NOT (orchard* OR vineyard* OR agroforestry*) No geographical or language restrictions were applied to the screening process, and the search period in ISI WoS, in both cases, was “All years” (i.e. 1864-2018). Criteria for inclusion in the databse were Articles were published in peer-reviewed journals (as opposed to book chapters or conference abstracts)Articles were based on studies conducted with structured experimental designs in a field settingArticles reported one or both of the following response variables: weed biomass and weed densityStudies included at least one comparison of weed response from a simplified rotation (control) and a diversified rotation (treatment). We restricted our selection process to studies that used harvested crops (i.e., grain, fruit, tuber, root, or forage biomass) and avoided studies where rotational diversity was enhanced only by inclusion of a non-harvested cover crop. A full list of these publications and the PRISMA flow diagram detailing the literature search process can be found included in this database package.
DOI: 10.6084/m9.figshare.7770977
title: Jogo "Mitos e fatos sobre o cérebro"

description: O jogo “Tabuleiro Mitos e verdade” é uma ferramenta criada para o ensino das neurociências, que foi elaborada pela Liga Acadêmica de Neurociências de Marabá - NeuroLiga para facilitar o estudo sobre as principais informações cientificas sobre o cérebro. A ferramenta não é limitada apenas ao ensino das neurociências em escolas, também pode ser usada como meio de divulgação científica, abrangendo todas as faixas etárias e escolaridade. O assunto exposto no jogo é abordado de uma forma simples e clara, fazendo com que o participante compreenda a informação que está sendo discutida.
DOI: 10.6084/m9.figshare.7770977.v1
title: Jogo "Mitos e fatos sobre o cérebro"

description: O jogo “Tabuleiro Mitos e verdade” é uma ferramenta criada para o ensino das neurociências, que foi elaborada pela Liga Acadêmica de Neurociências de Marabá - NeuroLiga para facilitar o estudo sobre as principais informações cientificas sobre o cérebro. A ferramenta não é limitada apenas ao ensino das neurociências em escolas, também pode ser usada como meio de divulgação científica, abrangendo todas as faixas etárias e escolaridade. O assunto exposto no jogo é abordado de uma forma simples e clara, fazendo com que o participante compreenda a informação que está sendo discutida.
DOI: 10.6084/m9.figshare.7770941
title: Corrected file for the data of Experiment 2 in "Testing the attentional dwelling hypothesis of attentional capture"

description: The compatibility effect was miscalculated in the original file and is now corrected<br><br>
DOI: 10.6084/m9.figshare.7770944
title: Supplementary Material for: Genetic Knowledge within a National Australian Sample: Comparisons with Other Diverse Populations

description: <b><i>Background:</i></b> Genetic knowledge, which plays important functions in our understanding of science, health, social groupings, and even behaviour, has been evaluated in past studies with various populations. This wide reach of genetics means that different types of items are used to assess genetic knowledge, which restricts meaningful comparisons across time- and locale-based studies. <b><i>Aim:</i></b> The present study addresses this limitation by recruiting an Australia-wide sample and evaluating their genetic knowledge using items sourced from four diverse samples. <b><i>Method:</i></b> Seven hundred and eighty Australians completed a variety of items assessing their genetic knowledge as well as several demographic indicators. <b><i>Results:</i></b> The results show superior overall genetic knowledge in the current sample compared with previous samples. Additionally, the study finds that genetic knowledge about health and illness seems to be the most accurate, whereas such knowledge about social categorisations and behaviours seems to be the most error-prone. In the current sample, being a female and having interest in genetics were positive predictors of genetic knowledge; surprisingly educational attainment was not a significant predictor. <b><i>Conclusion:</i></b> Compared with previous surveys, the current sample showed significantly better genetic knowledge. However, certain areas that relate to public understating still indicate rampant misperceptions.
DOI: 10.6084/m9.figshare.7770920
title: How many samples are needed to prove the absence of contamination - an example using arsenic?

description: An Excel spreadsheet containing the full dataset, showing its sub-sampling
DOI: 10.6084/m9.figshare.7770920.v1
title: How many samples are needed to prove the absence of contamination - an example using arsenic?

description: An Excel spreadsheet containing the full dataset, showing its sub-sampling
DOI: 10.6084/m9.figshare.7770905
title: Low endometrial beta-catenin and cadherins expression patterns are predictive for primary infertility and recurrent pregnancy loss

description: Inadequate uterine receptivity is responsible for two-third of implanting failures. Aim of the study was to investigate the role of epithelial adherence and tight-junction molecules expressed by human endometrium in predicting womens’ fertility outcome. A total of 76 consecutive women, including 24 fertile (G1), 40 primary infertile (G2), and 12 recurrent pregnancy loss (RPL, G3) women, who underwent diagnostic hysteroscopy plus endometrial biopsy between 2005 and 2016 at the Gynecology Division of Sant’Andrea Hospital, Sapienza University of Rome, in Italy, were retrospectively identified and included into the study. Endometrial biopsies were assessed for the immunohistochemical expression of beta-catenin (β-catenin), E-cadherin and K-cadherin biomarkers. Expression profiles were compared between the three groups of patients and were correlated with patients’ fertility outcome. In infertile patients there was a significant lower endometrial expression of β-catenin (<i>p</i> = .001), E-cadherin (<i>p</i> = .001) and K-cadherin (<i>p</i> = .002), compared to the fertile ones. Furthermore, β-catenin and E-cadherin intensity gradients of expression at glandular level were found totally reversed in infertile patients. Significant lower expression levels of K-catenin (<i>p</i> = .016) and E-cadherin (<i>p</i>
DOI: 10.6084/m9.figshare.7770905.v1
title: Low endometrial beta-catenin and cadherins expression patterns are predictive for primary infertility and recurrent pregnancy loss

description: Inadequate uterine receptivity is responsible for two-third of implanting failures. Aim of the study was to investigate the role of epithelial adherence and tight-junction molecules expressed by human endometrium in predicting womens’ fertility outcome. A total of 76 consecutive women, including 24 fertile (G1), 40 primary infertile (G2), and 12 recurrent pregnancy loss (RPL, G3) women, who underwent diagnostic hysteroscopy plus endometrial biopsy between 2005 and 2016 at the Gynecology Division of Sant’Andrea Hospital, Sapienza University of Rome, in Italy, were retrospectively identified and included into the study. Endometrial biopsies were assessed for the immunohistochemical expression of beta-catenin (β-catenin), E-cadherin and K-cadherin biomarkers. Expression profiles were compared between the three groups of patients and were correlated with patients’ fertility outcome. In infertile patients there was a significant lower endometrial expression of β-catenin (<i>p</i> = .001), E-cadherin (<i>p</i> = .001) and K-cadherin (<i>p</i> = .002), compared to the fertile ones. Furthermore, β-catenin and E-cadherin intensity gradients of expression at glandular level were found totally reversed in infertile patients. Significant lower expression levels of K-catenin (<i>p</i> = .016) and E-cadherin (<i>p</i>
DOI: 10.6084/m9.figshare.7770815
title: Microstructure analysis on the dynamic behavior of marine clay in the South China Sea

description: The aim of this article was to study the dynamic behavior and microstructural variation of undisturbed marine clay from the South China Sea. First, dynamic cyclic triaxial tests were employed to investigate the dynamic stress–strain-pore pressure paths of the undisturbed clay. Then, scanning electron microscopy and mercury intrusion porosimetry were used to measure the variations of the micromorphology and pore size distribution between before and after the dynamic cyclic tests. Through these tests, the dynamic failure process and microstructure variation of the marine clay were quantitatively analyzed. In particular, their relationships are qualitatively established from the macro-micro perspective. Furthermore, by comparing the tests of the remolded clay with those of the undisturbed marine clay, the influence of the microstructure on the dynamic behavior is systematically investigated. The results show that the microstructural variation of the marine clay is caused by the compression deformation of the mesopores among the granular clusters into the small pores between individual particles. The study provides an effective reference for the selection of the microstructural parameters of marine clay.
DOI: 10.6084/m9.figshare.7770824
title: revisao-dados.xlsx

description: Dados de escoamento pelo tronco obtidos a partir da revisão da literatura do período 2006 a 2019.
DOI: 10.6084/m9.figshare.7770815.v1
title: Microstructure analysis on the dynamic behavior of marine clay in the South China Sea

description: The aim of this article was to study the dynamic behavior and microstructural variation of undisturbed marine clay from the South China Sea. First, dynamic cyclic triaxial tests were employed to investigate the dynamic stress–strain-pore pressure paths of the undisturbed clay. Then, scanning electron microscopy and mercury intrusion porosimetry were used to measure the variations of the micromorphology and pore size distribution between before and after the dynamic cyclic tests. Through these tests, the dynamic failure process and microstructure variation of the marine clay were quantitatively analyzed. In particular, their relationships are qualitatively established from the macro-micro perspective. Furthermore, by comparing the tests of the remolded clay with those of the undisturbed marine clay, the influence of the microstructure on the dynamic behavior is systematically investigated. The results show that the microstructural variation of the marine clay is caused by the compression deformation of the mesopores among the granular clusters into the small pores between individual particles. The study provides an effective reference for the selection of the microstructural parameters of marine clay.
DOI: 10.6084/m9.figshare.7770824.v1
title: revisao-dados.xlsx

description: Dados de escoamento pelo tronco obtidos a partir da revisão da literatura do período 2006 a 2019.
DOI: 10.17870/bathspa.7770752
title: Mbira Hut Project - Mystic Mbira Duo at Schtumm, November 2018

description: This item relates to the PhD research of Chartwell Dutiro at Bath Spa University, the Mbira Hut Project. <br><br>Performance by Mystic Mbira Music (Chartwell Dutiro, Jori Buchel & Millicent Chapanda).<br><br>Images used with the permission of those individuals who appear in them, as well was the photographers.<br><br>Photos are courtesy of Dean Creighton. <br><br>Photos may not be used or redistributed without permission.
DOI: 10.17870/bathspa.7770752.v1
title: Mbira Hut Project - Mystic Mbira Duo at Schtumm, November 2018

description: This item relates to the PhD research of Chartwell Dutiro at Bath Spa University, the Mbira Hut Project. <br><br>Performance by Mystic Mbira Music (Chartwell Dutiro, Jori Buchel & Millicent Chapanda).<br><br>Images used with the permission of those individuals who appear in them, as well was the photographers.<br><br>Photos are courtesy of Dean Creighton. <br><br>Photos may not be used or redistributed without permission.
DOI: 10.6084/m9.figshare.7770764.v1
title: A Family of PIKFYVE Inhibitors with Therapeutic Potential Against Autophagy-Dependent Cancer Cells Disrupt Multiple Events in Lysosome Homeostasis

description: High-throughput screening identified 5 chemical analogs (termed the WX8-family) that disrupted 3 events in lysosome homeostasis: (1) lysosome fission via tubulation without preventing homotypic lysosome fusion; (2) trafficking of molecules into lysosomes without altering lysosomal acidity, and (3) heterotypic fusion between lysosomes and autophagosomes. Remarkably, these compounds did not prevent homotypic fusion between lysosomes, despite the fact that homotypic fusion required some of the same machinery essential for heterotypic fusion. These effects varied 400-fold among WX8-family members, were time and concentration dependent, reversible, and resulted primarily from their ability to bind specifically to the PIKFYVE phosphoinositide kinase. The ability of the WX8-family to prevent lysosomes from participating in macroautophagy/autophagy suggested they have therapeutic potential in treating autophagy-dependent diseases. In fact, the most potent family member (WX8) was 100-times more lethal to ‘autophagy-addicted’ melanoma A375 cells than the lysosomal inhibitors hydroxychloroquine and chloroquine. In contrast, cells that were insensitive to hydroxychloroquine and chloroquine were also insensitive to WX8. Therefore, the WX8-family of PIKFYVE inhibitors provides a basis for developing drugs that could selectively kill autophagy-dependent cancer cells, as well as increasing the effectiveness of established anti-cancer therapies through combinatorial treatments.
DOI: 10.17870/bathspa.7770722
title: Mbira Hut Project - Mystic Mbira Music Duo, Kop & Pui Gallery, Amsterdam, July 2018

description: Mystic Mbira Music Duo event held at Kop & Pui Gallery, Amsterdam, July 2018.<br>This item relates to the PhD research of Chartwell Dutiro at Bath Spa University, the Mbira Hut Project. <br>Art created by Baukje Duin. Images used with permission. <br>Photos taken by Jori Buchel. Images used with permission. <br>Images may not be used or shared without permission.
DOI: 10.17870/bathspa.7770722.v1
title: Mbira Hut Project - Mystic Mbira Music Duo, Kop & Pui Gallery, Amsterdam, July 2018

description: Mystic Mbira Music Duo event held at Kop & Pui Gallery, Amsterdam, July 2018.<br>This item relates to the PhD research of Chartwell Dutiro at Bath Spa University, the Mbira Hut Project. <br>Art created by Baukje Duin. Images used with permission. <br>Photos taken by Jori Buchel. Images used with permission. <br>Images may not be used or shared without permission.