cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tjp8h523p7
title: Indoor climate projections for European cattle barns

description: In the last decades, an exceptional global warming trend was observed. Modifications in the humidity and wind regime may amplify the regional and local impacts on livestock husbandry. Modifications in housing management are the main measures taken to improve the ability of livestock to cope with these conditions. Measures are, however, typically taken in reaction to uncomfortable conditions instead of in anticipation of a risk for climatic stress. Moreover, measures that balance welfare, environmental and economic issues are barely investigated in the context of climate change and are thus almost not available for commercial farms. In Europe, cows are economically highly relevant and are mainly kept in naturally ventilated buildings that are most susceptible to climate change. The high-yielding cows are particularly vulnerable to heat stress. We used nested models to estimate the future heat stress risk in such dairy cattle husbandry systems. The indoor climate was monitored inside three reference barns in Central Europe and in the Mediterranean region. An artificial neuronal network (ANN) was trained to relate the outdoor weather conditions provided by official meteorological weather stations to the measured indoor microclimate. Subsequently, this ANN model for the indoor microclimate was driven by an ensemble of regional climate model projections with three different greenhouse gas concentration scenarios. The data comprises: (1) Aggregated indoor measurements. Spatial averages for each barn are provided for zonal wind component (uw), meridional wind component (vw), air temperature (ta) and relative humidity (rh) as hourly averaged values. (2) Pictures of the naturally ventilated barns together with sketches of the measurement positions used for the averaging. (3) A map indicating the regional distribution of the data collection within the simulation domain. (4) Observations of the German Weather Service (DWD) and the National Climatic Data Center (NCDC) Archive of the National Oceanic and Atmospheric Administration (NOAA) aggregated to hourly values. Data for near-surface air temperature (tas), precipitation (pr), near-surface relative humidity (hurs), cloud coverage (cld), short wave downwelling radiation (rsds), sunshine duration (sdur), surface air pressure (ps), sea-level air pressure (psl), wind speed (wspd), wind direction (wdir), zonal wind component (uw), and meridional wind component (vw) are provided. Missing measurements were filled using a hot deck imputation method. (5) Simulated indoor climate conditions using trained artificial neuronal networks driven by historical respectively future (RCP 2.6, 4.5 and 8.5) climate model projections based on the CORDEX-EUR global-regional climate model ensemble. Time series of indoor averages for air temperature (ta), relative humidity (rh), zonal wind component (uw), meridional wind component (vw) and temperature humidity index (thi) are provided on an hourly base.
DOI: 10.6084/m9.figshare.14675382.v1
title: Sitobion avenae genome sequence (alternate)

description: An assembly of the <i>Sitobion avenae</i> (SA3 clone) genome from PacBio HiFi data. Alternate assembly generated using hifiasm assembler.
DOI: 10.17632/2hfrktn359
title: Funeral practices of the Final Bronze Age in the southern Trans-Urals: between cultural norm and deviation. Supplementary data

description: Appendix 1 presents a detailed archaeological context and the history of the study of the published materials. Appendix 2 contains data on the physical anthropology of the individual from the burial. Appendix 3 highlights the results of the analysis of the isotope ratios of strontium of an individual in comparison with background values. Appendix 4 presents generalized data on the burials of the Final Bronze Age of the Southern Trans-Urals.
DOI: 10.17632/by7t4gz5fx
title: LINF_130011400

description: Palmitoyl acyltransferase 6 | PAT6; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kmb89v8yhz
title: Measuring Document Similarity: A Comparative Analysis of NLP Methods in Finance

description: Vector embeddings for the business descriptions of S&P 500 constituent companies.
DOI: 10.17632/63ssmdjmy3
title:  AUSSİE  CURRENT

description: STUDY DESIGN: Randomized controlled trial
BACKGROUND: In systematic reviews and meta-analysis studies on patellofemoral pain syndrome (PFPS) has been stated that new studies should determine the most effective treatment methods. Comparison of Russian Currents (RC) and Aussie Currents (AC) with isokinetic method is important in terms of determining the most effective treatment method.
OBJECTIVES: A randomized controlled clinical study was conducted to compare the efficacy of isokinetic exercise (IE) together with RC and AC in individuals with PFPS. 
METHODS: 59 patients with PFPS were randomized into four groups. One group received only IE for three weeks, while the others received RC, AC, or placebo electrical stimulation  (pES) in addition to IE. Before starting the applications, the severity of symptoms and pain, functional status, activity limitations and quality of life of the patients were evaluated using Patellofemoral Syndrome Pain Severity Scale (PSSS), Stair Climbing Test (SCT), Anterior Knee Pain Scale (AKPS), Tegner Activity Level (TAS), Lysholm Knee Scoring Scale (LKSS), Knee Outcome Survey Activities of Daily Living Scale (KOS-ADL),  Short Form (SF-36). These assessments were repeated after the treatments and at the end of the three-week control period.
RESULTS: In the study, pain intensity (p<0.05), performance-based and patient-reported functional status, quality of life increased significantly PoT compared to PrT (p<0.05) in all four groups after treatment. The groups were found to be similar among themselves (p>0.05). As a result of the study, it was determined that pain severity decreased (p<0.05) post-treatment (PoT) compared to pretreatment (PrT in all four groups, and performance-based and patient-reported functional status and quality of life increased significantly (p<0.05) PoT compared to Prt. The effect was preserved in the control period (p>0.05).
CONCLUSION: The results of the study showed that isokinetic exercises were effective in patients with PFAS, while medium frequency alternating currents (AC and RC) applied together with isokinetic exercises did not make a significant difference.  
LEVEL OF EVIDENCE: Therapy, Level 1b. 11.02.2020 was registered on the website of Clinical Trials.gov (NCT number; NCT04945759).
KEY WORDS: Patellofemoral Pain Syndrome, Anterior Knee Pain Syndrome, Electrical Stimulation Therapy, Electrotherapy, Aussie Currents
DOI: 10.17632/rzvg7z46y5
title: data for "Phylogenetic conflict between species tree and mitochondrial gene trees in Murininae (Mammalia: Chiroptera: Vespertilionidae) and validation of the genus Harpiola"

description: The alignments of CDS, UCE and mitochondrial genome datasets.
DOI: 10.17632/vrh9whdyyx
title: Forgotten Effects in Personality of testers

description: This file contains the valuations from 6 experts in quality software about the causality between personality testers and the results in the objectives of quality in a team.
The first sheet has the causes against effects (causes are the characteristics of personality and effects are the objectives of quality of testing), the second sheet has the relations between causes and causes, and the third one effects versus effects.
DOI: 10.17632/5nghr6xrmw
title: USING GENAI CHATBOTS: USER TYPOLOGY AND STRATEGIES TO INCREASE USER TRUST

description: The questionnaire used to evaluate user perceptions of a generative AI conversational agent (CgAI). Respondents assessed the agent's performance across various dimensions using a 5-point Likert scale, where 1 = strongly disagree and 5 = strongly agree.
The questionnaire items are categorized by conceptual dimensions to facilitate interpretation, although they were presented in randomized order during data collection. Each item is preceded by a code that corresponds to variables listed in Tables 2, 3, and 4 of the main article.
The dimensions and corresponding items are as follows:
Performance
Measures how effectively the CgAI agent aids users in completing tasks.
PER1–PER5: Evaluate efficiency, speed, ease of interaction, and task support.
Security
Assesses user perceptions of data privacy and trust in secure handling.
SEC1–SEC4: Gauge trust in data safety, privacy respect, and secure communication.
Beneficence
Reflects the agent’s intent and competency in providing helpful, trustworthy information.
BEN1–BEN4: Measure perceived helpfulness, reliability, and user-centric behavior.
Anthropomorphism
Captures the degree to which the agent is perceived as understanding and responsive like a human.
ANT1-ANT4: Evaluate perceived understanding, contextual awareness, and adaptability to feedback.
Immediacy
Refers to the personalization and continuity of user experience over time.
IMM1–IMM3: Assess memory of past interactions, adaptation to preferences, and tailored suggestions.
Cognitive-Based Trust
Relates to the perceived accuracy and consistency of the agent’s responses.
CBT1–CBT3: Measure factual reliability and error rates.
Affect-Based Trust
Reflects emotional trust, including comfort, confidence, and emotional sensitivity.
ABT1–ABT4: Evaluate emotional support, confidence-building, and responsiveness to emotional cues.
DOI: 10.17632/dpc5sm8y8k
title: Housing preferences for a small and portable dwelling: Stated choice experiment

description: The online survey was opened for three weeks in June 2013 and it was distributed in the Netherlands through various channels. A total of 450 people were personally invited to complete the survey, and from the company that designed and produced the housing concept, the invitation was shared through newsletters (760 people), an internal social network (8000), and the company’s Twitter account (16,000). Overall, the questionnaire reached 625 respondents, of whom 280 (nearly 50%) completed the survey.
DOI: 10.17632/ykmch569tj
title: Summary of strains used in the work and the key genes related to the use of 2'FL

description: one hundred and fifty-one strains of Bifidobacterium used in this study were deposited at Culture Collection of Food Microorganisms (CCFM), Jiangnan University, including B. bifidum, B. breve, B. longum subsp. longum, B. longum subsp. infantis, B. adolescentis, B. animalis, B. pseudocatenulatum, B. angulatum and B. dentium. An 2'FL ABC transporter coupled ATP hydrolysis to efficient internalization of sugars and appeared to represent the essential carbohydrate transportation frameworks for bifidobacteria (Davidson et al., 2008; Jojima et al., 2010; O'Callaghan et al., 2016). These systems were broadly found in numerous microbes and had also been identified in most, but not all, bifidobacterial genomes (O'Callaghan and van Sinderen, 2016). Despite B. bifidium, 2'FL specific ABC transporter was essential for 2'FL utilization in Bifidobacterium (Thomson et al., 2018; Sakanaka et al., 2019), which composed of nucleotide-binding domain(NBD), trans-membrane domain(TMD) and solute binding protein (SBP) (Verrier et al., 2008; Matsuki et al., 2016). Putative 2'FL ABC transporter (K02025, K02026, K02027) was identified to play a vital role in 2'FL utilization through genomic analysis and gene knockout approaches in a previous research (Matsuki et al., 2016). Through genetic determinants analysis, complete putative 2'FL ABC transporter were found in most B. longum subsp. longum (50%), B. longum subsp. infantis (90%) and B. angulatum (75%), which was significantly higher than that in B. bifidum (4.54%), B. breve (22.22%), B. adolescentis (5%), B. pseudocatenulatum (9.09%) and B. dentium (22.22%). While no complete putative 2'FL ABC transporter system was identified in any B. animalis strains (Table 1). In addition, no obvious relationship was found between the existence of carbohydrate utilization active enzyme and transporter system as well as the origin of those strains (infants, teenagers, adults, etc). Simultaneously, among those 2'FL utilizers, most strains were isolated from neonates and infants (67.57%).
DOI: 10.5061/dryad.c08b5
title: Data from: Recent rapid speciation and ecomorph divergence in Indo-Australian sea snakes

description: The viviparous sea snakes (Hydrophiinae) are a young radiation of at least 62 species that display spectacular morphological diversity and high levels of local sympatry. To shed light on the mechanisms underlying sea snake diversification, we investigated recent speciation and eco-morphological differentiation in a clade of four nominal species with overlapping ranges in Southeast Asia and Australia. Analyses of morphology and stomach contents identified the presence of two distinct ecomorphs: a ‘macrocephalic’ ecomorph that reaches &gt;2 m in length, has a large head and feeds on crevice-dwelling eels and gobies; and a ‘microcephalic’ ecomorph that rarely exceeds 1 m in length, has a small head and narrow fore-body and hunts snake eels in burrows. Mitochondrial sequences show a lack of reciprocal monophyly between ecomorphs and among putative species. However, individual assignment based on newly developed microsatellites separated co-distributed specimens into four significantly differentiated clusters corresponding to morphological species designations, indicating limited recent gene flow and progress towards speciation. A coalescent species tree (based on mitochondrial and nuclear sequences) and isolation-migration model (mitochondrial and microsatellite markers) suggest between one and three transitions between ecomorphs within the last approximately 1.2 million to approximately 840 000 years. In particular, the macrocephalic ‘eastern’ population of Hydrophis cyanocinctus and microcephalic H. melanocephalus appear to have diverged very recently and rapidly, resulting in major phenotypic differences and restriction of gene flow in sympatry. These results highlight the viviparous sea snakes as a promising system for speciation studies in the marine environment.
description: IM_coggeri_vs_melanoIM input for coggeri versus melanocephalus comparisonIM_cyano_vs_melanoIM input for cyanocinctus versus melanocephalus comparisonmorphology&diet_data.xlsExcel spreadsheet of morphometric data (snout to vent length, relative girth at 0.75 snout to vent length versus neck); and new (previously unpublished) diet recordsSTRUCTURE_inputfileStructure input file generated using MSA4.05
DOI: 10.17632/rsp55kjk26
title: Data for: Assessment of the ratio between otolith area and fish standard length as an environmental quality indicator

description: Dataset used for the assessment of the ratio between otolith area and fish standard length as an environmental quality indicator.
DOI: 10.15468/dl.ku955b
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phasia obesa (Fabricius, 1798)"
 ]
}

 The dataset includes 231 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009098-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wp553gn2kx
title: Oral Lachnospiraceae plays a protective role in the host defense against respiratory herpesvirus infection and herpesvirus stimulated Pasteurella multocida infection

description: The gut microbiota has been identified as pivotal for respiratory health, yet there remains limited understanding of its influence on respiratory coinfection. This study aimed to explore the impact of the gut microbiota on respiratory coinfection involving the zoonotic pathogens Suid herpesvirus 1 (SHV-1) and Pasteurella multocida (PM) using mouse models. Our findings revealed that SHV-1 infection disrupted the balance of the murine gut microbiota, exacerbating PM infection in mice, as demonstrated by 16S rRNA sequencing of murine fecal samples and fecal microbiota transplantation experiments. Analysis using LEfSe identified Lachnospiraceae as a significantly altered bacterial family between healthy mice and those infected with the pathogens. Subsequent mouse studies demonstrated that oral Lachnospiraceae effectively ameliorated PM infection triggered by SHV-1. Mechanistically, oral Lachnospiraceae restored the integrity of the respiratory barrier disrupted by SHV-1 infection. Furthermore, oral Lachnospiraceae restored several metabolites (such as disodium succinates, acetic acids, or butyric acids) that were altered by SHV-1 infection in the murine gut, as revealed by metabolomics sequencing. Treatment of mice with these metabolites alleviated symptoms and reduced mortality associated with the infection. These findings underscore the significant role of the “lung-gut axis” in respiratory infections.
DOI: 10.17632/tpr9ggkdwj
title: Data for: Understanding the mothers of children with Spina Bifida and Hydrocephalus in Tanzania

description: Questionnaire outcomes. The questions stated are the same as asked to the mothers.
DOI: 10.17632/htzjvfv3wn
title: Data for: Supported ionic liquid membranes for the separation of methanol/dimethyl carbonate mixtures by pervaporation

description: Pervaporation data using supported ionic liquid membranes for the separation of methanol-DMC mixtures
DOI: 10.17632/fs7bx7739s
title: LINF_140019500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vmr38rtcc8
title: Parallel Assembly Sequence Planning

description: This study introduces an advanced approach to the Parallel Assembly Sequence Planning (PASP) problem, addressing the complexities of task interdependencies and real-time adaptability across multiple parallel assembly lines. Traditional PASP methods often rely on static heuristics and struggle to accommodate dynamic production environments. To overcome these limitations, we propose the Advanced Priority Relationship Algorithm (APRA), a machine learning-enhanced framework that dynamically predicts assembly sequence parameters using a random forest model.
DOI: 10.17632/55t28rfhtc
title: eIF4A3 phosphorylation by CDKs affects NMD during the cell cycle. Ryu et al

description: Exon junction complexes (EJCs) loaded onto spliced mRNAs during splicing serve as molecular markers for various post-transcriptional gene-regulatory processes including nonsense-mediated mRNA decay (NMD). Although the composition and structure of EJCs are well characterized, the regulatory mechanism for EJC deposition remains unknown. Here, we find that threonine 163 (T163) within the RNA-binding motif of eIF4A3 (a core EJC component) is phosphorylated by cyclin-dependent protein kinases 1 and 2 in a cell cycle-dependent manner. T163 phosphorylation hinders the binding of eIF4A3 to spliced mRNAs and other EJC components. Instead, it promotes association of eIF4A3 with CWC22, which guides eIF4A3 to an active spliceosome. These molecular events ensure the fidelity of specific deposition of EJC ~20–24 nucleotides upstream of an exon-exon junction. Accordingly, NMD is affected by T163 phosphorylation. Collectively, our data provide molecular evidence that T163 phosphorylation affects EJC formation and consequently NMD efficiency in a cell cycle-dependent manner.
DOI: 10.17632/b722nfy9hv
title: Ronin single molecule

description: Overnight cultures were diluted 1:100 in LB supplemented with 0.1% L-Arabinose to overexpress Ronin, and grown until they reached an optical density (OD600) of 0.4-0.6. Cultures were induced with 1 mM IPTG for 30, 90 or 120 minutes before harvesting for microscopy. Cells were washed once with 1X Phosphate buffer saline (PBS) and resuspended in 700 µL of 1X PBS. Next, 30 µL of cell suspension were loaded onto a polylysine (Sigma P8920) coated coverslip and fixed in 4% paraformaldehyde for 10 minutes at room temperature. To minimize nonspecific staining, the sample was blocked with 5% BSA for 15 minutes at room temperature. To visualize the membranes, samples were stained with 10 µg/mL WGA AF647 in 1X PBS for 15 minutes, and washed three times with 1X PBS. ONI dSTORM imaging buffer was added prior to imaging. 
Cells were imaged with an ONI NanoImager microscope (Oxford, UK). The microscope was equipped with 100x oil immersion objective with a numerical aperture of 1.45 and lasers with the following specifications: 405 nm/150 mW, 488 nm/1 W, 560 nm/500 mW, and 640 nm/1 W. ONI Bcube B dSTORM buffer was used as the imaging buffer. mNeonGreen was excited with a 488 nm laser at 112 mW, while WGA AF647 was excited using a 640 nm laser at 100 mW of power at the objective. Emission channels were separated using 640 dichroic and recorded as two separate images. Simultaneous excitation of dyes was performed with a 30 millisecond exposure time over 20,000 frames, employing HILO (Highly Inclined and Laminated Optical sheet) illumination technique. The acquisition was performed using NimOS 19.5 software, which incorporates real-time localization to generate super-resolution images. To enhance image quality, NimOS built-in drift correction was applied to single molecule images, and a localization precision filter between 0 and 20 nm was employed. Additionally, the first 100 frames were disregarded to ensure stability before analysis. For analysis of the localization distribution, the line histogram tool available in NimOS was utilized to extract the localization across the width of 30 randomly selected cells. The resulting localization distribution over distance data was exported as a .CSV file for further analysis using GraphPad Prism 10.
DOI: 10.6084/m9.figshare.12000591.v1
title: Supplementary Material for: Relapse of Nephrotic Syndrome after Adrenocorticotrophic Hormone-Induced Remission: Implications of Adrenocorticotrophic Hormone Antibodies

description: <b><i>Background:</i></b> Prolonged use of corticosteroids continues to be the mainstay in the management of most proteinuric glomerulopathies, but is limited by extensive side effects. Alternative medications such as adrenocorticotrophic hormone (ACTH) have been recently used to treat refractory glomerulopathies and have shown superior outcomes when compared with steroids. However, the clinical responsiveness to ACTH therapy varies considerably with a number of patients exhibiting de novo or acquired resistance. The underlying mechanism remains unknown. <b><i>Methods:</i></b> A patient with steroid-dependent focal segmental glomerulosclerosis (FSGS) developed severe steroid side effects impacting quality of life and was converted to repository porcine ACTH therapy. Immediate response in the form of remission of nephrotic syndrome was noted followed by relapse in 10 weeks. Suspecting the role of some ACTH-antagonizing factors, the patient’s serum was examined. <b><i>Results:</i></b> Immunoblot-based antibody assay revealed high titers of de novo IgG antibodies in the patient’s serum that were reactive to the porcine corticotropin with negligible cross-reactivity to human corticotropin. In vitro, in cultured B16 melanoma cells that express abundant melanocortin receptors, addition of the patient’s serum substantially abrogated the porcine corticotropin triggered signaling activity of the melanocortinergic pathway, marked by phosphorylation of glycogen synthase kinase 3β, thus suggesting a mitigating effect on the biological functionality of porcine corticotropin. <b><i>Conclusion:</i></b> ACTH is a useful alternative therapeutic modality for refractory proteinuric glomerulopathies like FSGS. However, as quintessential therapeutic biologics, natural ACTH, regardless of purity and origin, is inevitably antigenic and may cause the formation of neutralizing antibodies in some sensitive patients, followed by resistance to ACTH therapy. It is imperative to develop ACTH analogues with less immunogenicity for improving its responsiveness in patients with glomerular diseases.