cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/d1.1401
title: Data related to Lee et al. 2020 eLife, Sifting in SC

description: This is data related to Lee et al. 2020 eLife, The sifting of visual information in the superior colliculus. Please see README.txt for further descriptions.
description: Related Publication:
The sifting of visual information in the superior colliculus

Kyu Hyun Lee, Alvita Tran, Zeynep Turan, Markus Meister Division of Biology and Biological Engineering, Caltech

eLife

https://doi.org/10.7554/eLife.50678
eng
description: Contact person: Markus Meister meister@caltech.edu
DOI: 10.22002/d1.1302
title: Data for AFFL-2 Paper

description: Data for "Caenorhabditis elegans AF4/FMR2 family homolog affl-2 regulates heat shock induced gene expression"
Includes supplementary information, Hawaiian Mapping Data (PS8082, and PS7644_HA_background zip files) HSF1 Localization and Expression Data, protruding intestine (hernia) assays and lin-3c assays.
description: Related Publication:
Caenorhabditis elegans AF4/FMR2 family homolog affl-2 regulates heat shock induced gene expression

Sophie J. Walton*, Han Wang*,‡, Porfirio Quintero-Cadena*, Alex Bateman†, and Paul W. Sternberg*,1 * Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA † European Molecular Biology Laboratory, European Bioinformatics Institute, (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK ‡ Present affiliation: Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI 53706, USA
eng
DOI: 10.22002/d1.1295
title: Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine

description: Background: The upper gastrointestinal tract plays a prominent role in human physiology as the primary site for enzymatic digestion and nutrient absorption, immune sampling, and drug uptake. Alterations to the small-intestine microbiome have been implicated in various human diseases, such as non-alcoholic steatohepatitis and inflammatory bowel conditions. Yet, the physiological and functional roles of the small-intestine microbiota in humans remain poorly characterized because of the complexities associated with its sampling. Rodent models are used extensively in microbiome research and enable the spatial, temporal, compositional, and functional interrogation of the gastrointestinal microbiota and its effects on the host physiology and disease phenotype. Classical, culture-based studies have documented that fecal microbial self-reinoculation (via coprophagy) affects the composition and abundance of microbes in the murine proximal gastrointestinal tract. This pervasive self-reinoculation behavior could be a particularly relevant study factor when investigating small-intestine microbiota. Modern microbiome studies either do not take self-reinoculation into account, or assume that approaches such as single housing mice or housing on wire mesh floors eliminate it. These assumptions have not been rigorously tested with modern tools. Here, we used quantitative 16S rRNA gene amplicon sequencing, quantitative microbial functional gene content inference, and metabolomic analyses of bile acids to evaluate the effects of self-reinoculation on microbial loads, composition, and function in the murine upper gastrointestinal tract.

Results: In coprophagic mice, continuous self-exposure to the fecal flora had substantial quantitative and qualitative effects on the upper gastrointestinal microbiome. These differences in microbial abundance and community composition were associated with an altered profile of the small-intestine bile acid pool, and, importantly, could not be inferred from analyzing large-intestine or stool samples. Overall, the patterns observed in the small intestine of non-coprophagic mice (reduced total microbial load, low abundance of anaerobic microbiota, and bile acids predominantly in the conjugated form) resemble those typically seen in the human small intestine. 
Conclusions: Future studies need to take self-reinoculation into account when using mouse models to evaluate gastrointestinal microbial colonization and function in relation to xenobiotic transformation and pharmacokinetics or in the context of physiological states and diseases linked to small-intestine microbiome and to small-intestine dysbiosis.
DOI: 10.22002/d1.1288
title: Tethered Particle Motion Measurements used in "Sequence Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination."

description: This data set contains an array of .mat files that contain various statistics and classifications of single-molecule events from tethered particle motion experiments. More detail can be found at https://rpgroup.caltech.edu/vdj_recombination
DOI: 10.22002/d1.1249
title: MD&A statements from public firms: 2002-2018

description: Text and headers from MD&A sections found in public firm 10-K statements.    Follow these directions to get the data in a form that can be analyzed: https://github.com/michaelewens/MD-A-10K
description: Related Publication:
Acquisition Prices and the Measurement of Intangible Capital 

Ewens, Peters and Wang

Working paper https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3287437

2019-05-31
eng
DOI: 10.22002/d1.1241
title: Raw flow cytometry data for "Predictive shifts in free energy couple mutations to their phenotypic consequences""

description: This data set contains raw flow cytometry files for the publication "The Energetics of Molecular Adaptation in Transcriptional Regulation". Please see the included README for details of the files and missing data sets.
DOI: 10.22002/d1.1184
title: Microscopy image files for "First-principles prediction of the information processing capacity of a simple genetic circuit."

description: These data correspond to the raw microscopy images used to quantify fluorescence and compute gene expression distributions due to the activity of the Lac repressor molecule in E. coli cells. These images were passed through an image analysis pipeline which segmented individual cells and computed the mean pixel value for each cell. These data are separated by the operator we examined. A single strain was measured in twelve different inducer concentrations for each dataset with a total of 9 different strains imaged among all datasets. Please see the main text or the paper website at https://www.rpgroup.caltech.edu/chann_cap/ for more information.
description: Contact person: Manuel Razo-Mejia mrazomej@caltech.edu
DOI: 10.22002/d1.1087
title: CTX multistrip elevation model of the NE Syrtis region, Mars

description: GIS files for a multistrip CTX elevation model created with SOCET Set to support geologic mapping at NE Syrtis, Mars
DOI: 10.22002/d1.1854
title: cDNA Fastqs for Multiplexed Clytia Starvation Experiment R1_08

description: cDNA Fastqs for Multiplexed Clytia Starvation Experiment R1_08 from HiSeq 4000
DOI: 10.5281/zenodo.7335450
title: Data for: Fluid fermionic fragments for optimizing quantum measurements of electronic Hamiltonians in the variational quantum eigensolver

description: Data for publication: S. Choi, I. Loaiza, and A. F. Izmaylov, "Fluid fermionic fragments for optimizing quantum measurements of electronic Hamiltonians in the variational quantum eigensolver" arXiv:2208.14490 (2022).
DOI: 10.5287/bodleian:dedqwxzqw
title: Processed terrestrial and marine debris matrices for "Sources of marine debris for Seychelles and other remote islands in the western Indian Ocean"
DOI: 10.6073/pasta/c7f8c3c651275ba8df8d3529e05cfcc6
title: Lake Metabolism at North Temperate Lakes LTER 2000

description: Recent literature suggests that for many lakes and rivers, the respiratory breakdown of organic matter (R) exceeds production of organic matter by photosynthesis (gross primary production; GPP) within the water body. This metabolic balance (GPP less than R; heterotrophy ) implies that allochthonous organic matter supports a portion of the aquatic ecosystems respiration. Evidence that many lakes are heterotrophic comes from diverse approaches, and debate remains over the circumstances in which heterotrophy exists. The methods used to estimate GPP and R and the limited extent of lake types studied, especially with respect to dissolved organic carbon (DOC) and total phosphorus (TP) concentrations, are two reasons for differing conclusions. In this study, O2 and CO2 sondes were deployed during July and August, 2000 to measure diel gas dynamics in the surface waters of 25 lakes in the Northern Highland Lake district of Wisconsin and the Upper Peninsula of Michigan. The lakes were chosen to span wide and orthogonal ranges in DOC and TP concentrations. From these data, we calculated GPP, R and net ecosystem production (NEP=GPP-R). Over the broad range in TP and DOC among the lakes, diel CO2 and O2 changed on a near 1:1 molar ratio. Metabolism estimates from the two gases were comparable, except at high pH. Most lakes in our data set had -NEP, but GPP and R appeared to be controlled by different factors. TP correlated strongly with GPP, whereas DOC correlated with R. At low DOC concentrations, GPP and R were nearly equal, but at higher DOC, GPP and R uncoupled and lakes had -NEP. Strong correlations between lake metabolism and landscape related variables suggest that allochthonous carbon influences lake metabolism. Sampling Frequency: Chemical parameters and physical properties sampled from 1 to 4 times during the summer. Time series data step is 30 minutes. Number of sites: Time series data for 25 lakes. Chemical and physical data from 31 lakes.
DOI: 10.6073/pasta/ff921af454439db40e6a81f39f58cb02
title: North Temperate Lakes LTER: Residential Lakeshore Property Sales in Vilas County 1997 - 2004

description: Sales of residential shoreline property parcels in Vilas County, WI, USA for the period January 1997 througt Dec 2004. This dataset includes sales of over 2000 parcels on 234 lakes. In addtion to the sale price, other information collected include assessed value of the land, assessed value of improvements, length of lake frontage and total size of the parcel.
DOI: 10.5281/zenodo.7335430
title: PartSeg bioimageio - Trapalyzer dataset

description: Data for PartSeg bioimageio training tutorial
DOI: 10.5281/zenodo.7335429
title: PartSeg bioimageio - Trapalyzer dataset

description: Data for PartSeg bioimageio training tutorial
DOI: 10.25810/fq7x-q521.35
title: Middle Eastern Newspaper Coverage of Climate Change or Global Warming, 2004-2022 - October 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/gyv-zg57.55
title: New Zealand Newspaper Coverage of Climate Change or Global Warming, 2000-2022 - October 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/3gtp-yy33.34
title: North American Newspaper Coverage of Climate Change or Global Warming, 2000-2022 - October 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.7334782
title: Preprocessed EEG data for the experiment reported in "Understanding the effects of constraint and predictability in ERP"

description: This repository contains intermediate preprocessing files for the above-named paper. Preprocessing scripts are stored at: https://osf.io/fndk5/ For the raw EEG data, please see https://zenodo.org/record/6992085. The intermediate preprocessing files are *_ica.rds (R datasets saved after running ICA), and *_prepro.rds (R datasets saved after individual preprocessing complete, before combination with other participants). To use the data with the preprocessing scripts, download and save it in a folder called prepro_EEG_data as explained in the preprocessing script.
DOI: 10.5281/zenodo.7334781
title: Preprocessed EEG data for the experiment reported in "Understanding the effects of constraint and predictability in ERP"

description: This repository contains intermediate preprocessing files for the above-named paper. Preprocessing scripts are stored at: https://osf.io/fndk5/ For the raw EEG data, please see https://zenodo.org/record/6992085. The intermediate preprocessing files are *_ica.rds (R datasets saved after running ICA), and *_prepro.rds (R datasets saved after individual preprocessing complete, before combination with other participants). To use the data with the preprocessing scripts, download and save it in a folder called prepro_EEG_data as explained in the preprocessing script.
DOI: 10.6084/m9.figshare.21571602.v2
title: data.zip

description: Ground reaction force，Muscle force, joint force
DOI: 10.5281/zenodo.7002697
title: [SUPERCEDED] Preprocessed EEG data for the experiment reported in "Understanding the effects of constraint and predictability in ERP"

description: This repository contains <strong><em>an outdated version of</em></strong> intermediate preprocessing files for the above-named paper. Please see the current version here: https://zenodo.org/record/7334782
DOI: 10.5281/zenodo.7002696
title: [SUPERCEDED] Preprocessed EEG data for the experiment reported in "Understanding the effects of constraint and predictability in ERP"

description: This repository contains <strong><em>an outdated version of</em></strong> intermediate preprocessing files for the above-named paper. Please see the current version here: https://zenodo.org/record/7334782
DOI: 10.5517/ccdc.csd.cc1q3klz
title: CCDC 1582351: Experimental Crystal Structure Determination

description: Related Article: Javier López-Cabrelles, Samuel Mañas-Valero, Iñigo J. Vitórica-Yrezábal, Pablo J. Bereciartua, Eugenio Coronado, Guillermo Mínguez Espallargas|2022|Dalton Trans.|51|1861|doi:10.1039/D1DT03734J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26smvh
title: CCDC 2049467: Experimental Crystal Structure Determination

description: Related Article: Talal F. Al-Azemi, Mickey Vinodh|2022|RSC Advances|12|1797|doi:10.1039/D1RA09043G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28692w
title: CCDC 2091417: Experimental Crystal Structure Determination

description: Related Article: Maor Asher, Rémy Jouclas, Marco Bardini, Yael Diskin-Posner, Nitzan Kahn, Roman Korobko, Alan R. Kennedy, Lygia Silva de Moraes, Guillaume Schweicher, Jie Liu, David Beljonne, Yves Geerts, Omer Yaffe|2022|ACS Mater. Au|2|699|doi:10.1021/acsmaterialsau.2c00020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28ly72
title: CCDC 2103574: Experimental Crystal Structure Determination

description: Related Article: Maor Asher, Rémy Jouclas, Marco Bardini, Yael Diskin-Posner, Nitzan Kahn, Roman Korobko, Alan R. Kennedy, Lygia Silva de Moraes, Guillaume Schweicher, Jie Liu, David Beljonne, Yves Geerts, Omer Yaffe|2022|ACS Mater. Au|2|699|doi:10.1021/acsmaterialsau.2c00020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e183082
title: Publish-or-perish

description: This project has a data-set of 373 responses on publish-or-perish policy and 5 expert interviews
DOI: 10.3886/e183082v1
title: Publish-or-perish

description: This project has a data-set of 373 responses on publish-or-perish policy and 5 expert interviews
DOI: 10.5287/bodleian:rj5mk542b
title: Sensor based ambient air concentration data for nitrogen dioxide and particles in Oxford, measured by the OxAria project 2020 to 2021.
DOI: 10.5519/qd.gtx3ii3d
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5 records)
DOI: 10.5281/zenodo.5808833
title: D-BeONE.1.2 BeONE dataset

description: <strong>JRP24-FBZSH9-BEONE WP1 deliverable 1.2.</strong> WP Leader: Vítor Borges (INSA) Other contributors: Verónica Mixão (INSA), Miguel Pinto (INSA), Holger Brendebach (BfR), Simon Tausch (BfR), Carlus Deneke (BfR), Karin Lagesen (NVI) In order to contribute to the accomplishment of specific objectives of the BeOne project, WP1-T2 compiled an <strong>anonymized dataset</strong> (including sequencing reads and respective metadata) aiming to capture the genomic diversity within the populations of <em>Listeria monocytogenes, Salmonella enterica, Escherichia coli </em>(STEC) and <em>Campylobacter jejuni. </em>This dataset counts with data shared by the BeOne partners and the sequencing data and respective genome assemblies will be publicly released by the end of the project. Although it may still be subject to alterations (i.e. inclusion of additional samples), the current BeONE dataset comprises a total of 3,439 isolates [<em>L. monocytogenes </em>(n=1,305), <em>S. enterica </em>(n=1,169), <em>E. coli </em>(n=244) and <em>C. jejuni </em>(n=721)].
DOI: 10.5281/zenodo.7051673
title: Sounding data of SO284

description: Radiosonde data from the RV Sonne cruise SO284: Tropical Atlantic Circulation and Climate: Mooring Rescue<br> (June 27, 2021 - August 16, 2021) The dataset includes both raw data as well as post-processed products: Processing level Description Usage examples 0 mwx sounding files as delivered by Vaisalas sounding software Checking specific setup of sounding station, Archival of data 1 Level 0 data converted to netCDF4 Analysis of single soundings for the most accurate measurements possible 2 Level 1 data interpolated to a vertical grid Analysis of entire campaign or comparison with other observations or simulations A full description of the dataset and the processing scripts involved can be found in the following repository: https://github.com/observingClouds/soundings_circbrazil Soundings were conducted by H. Franke, I. Quaglia, K. Stolla and J. Windmiller. Technical support has generously been given on-board by R. Engelmann, J. Lehmke, T. Ruhtz and A. Skupin. Post-processing of the data has been done by H. Schulz. Planning of the cruise and the atmospheric measurement strategy are the work of J. Windmiller. <strong>Acknowledgment</strong> <em>The crew of R/V Sonne greatly contributed to the success of the cruise. Financial support was provided by the German Science Foundation (DFG), by the EU H2020 under grant agreement 817578 TRIATLAS project and by the German Federal Ministry for Economic Affairs and Energy (BMWi) under grant no. 50EE1721C. We also acknowledge the public support of the conducted basic research through the Max Planck Society.</em>
DOI: 10.6084/m9.figshare.21584007
title: Oxidative stress triggers hyperdynamic circulation via central neural activation in portal hypertensive rats

description: Excel spreadsheet for raw data
DOI: 10.6084/m9.figshare.21584007.v1
title: Oxidative stress triggers hyperdynamic circulation via central neural activation in portal hypertensive rats

description: Excel spreadsheet for raw data
DOI: 10.5683/sp2/tobqs2
title: Data from: The evolution of environmental tolerance and range size: A comparison of geographically restricted and widespread Mimulus

description: AbstractThe geographic ranges of closely related species can vary dramatically, yet we do not fully grasp the mechanisms underlying such variation. The niche breadth hypothesis posits that species that have evolved broad environmental tolerances can achieve larger geographic ranges than species with narrow environmental tolerances. In turn, plasticity and genetic variation in ecologically important traits and adaptation to environmentally variable areas can facilitate the evolution of broad environmental tolerance. We used five pairs of western North American monkeyflowers to experimentally test these ideas by quantifying performance across eight temperature regimes. In four species pairs, species with broader thermal tolerances had larger geographic ranges, supporting the niche breadth hypothesis. As predicted, species with broader thermal tolerances also had more within-population genetic variation in thermal reaction norms and experienced greater thermal variation across their geographic ranges than species with narrow thermal tolerances. Species with narrow thermal tolerance may be particularly vulnerable to changing climatic conditions due to a lack of plasticity and insufficient genetic variation to respond to novel selection pressures. Conversely, species experiencing high variation in temperature across their ranges may be buffered against extinction due to climatic changes because they have evolved tolerance to a broad range of temperatures.