cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0175485.10fu
title: SH0175485.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175486.10fu
title: SH0175486.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18199586
title: TCOM-O3: TOMCAT CTM and Occultation Measurements based daily ozone  profile data set

description: The TOMCAT simulation was conducted at a T64L32 resolution, consistent with previous work by Dhomse and Chipperfield (2023), covering the period from 2000 to 2024. These simulations utilized ERA-5 reanalysis data.

O3 Profile Processing and Bias Correction

Collocated O3 profiles are organized into five distinct latitude bins:



NH polar: 90∘N - 50∘N

NH mid-lat: 20∘N - 70∘N

Tropics: 40∘S - 40∘N

SH mid-lat: 70∘S - 20∘S

SH polar: 90∘S - 50∘S


 Initially, TOMCAT tracers are interpolated on the ACE FTS height (1km to 50km) Separate XGBoost regression models are trained to predict ACE FTS measurements for a given altitude /latitude bin if more than 2000 measurements are available. XGBoost model is then used to estimate O3 volume mixing ratios for all the TOMCAT grids.  Height resolved data are then interpolated on 22-pressure levels. For overlapping latitude bins, we use averages and then calculate daily zonal mean values.  For more details see attached presentation.

Dataset also includes two files containing daily mean zonal mean O3 profiles on height (1-50 km) and pressure (300-1 hPa) – 22 levels (9132 days/64 latitudes). Files also include uncertainties estimated using quantile regression and uncertainty = NaN means data is from TOMCAT CTM (scientifically useful range 5 to 25km).

zmo3_tcom_hlev_2000-2024_V2.0.nc – height level data (1 to 50 km)

zmo3_tcom_plev_2000-2024_V2.0.nc – pressure level data (300 to 1 hPa)

Daily 3D profiles on height and pressure levels would be made available on request. Xarrays “resample” can be used to get monthly means.

(Attached pdf file gives more details. This data set improves from our previous methodology (Dhomse and Chipperfield, 2023, ESSD) and manuscript describing to those updates is submitted to ESSD as Dhomse and Chipperfield, 2026.

 

Reference Publications

This methodology, incorporating only ACE-FTS data and various minor algorithmic developments, is based on the following publication:

Dhomse, S. S. and Chipperfield, M. P.: Using machine learning to construct TOMCAT model and occultation measurement-based stratospheric methane (TCOM-CH4) and nitrous oxide (TCOM-N2O) profile data sets, Earth Syst. Sci. Data, 15, 5105–5120, https://doi.org/10.5194/essd-15-5105-2023, 2023

Dhomse, S. S. and Chipperfield, M. P.: TCOM-CFC11 and TCOM-CFC12: A Gap-Free, Observationally Constrained Global Dataset of Stratospheric CFC11 and CFC12 Profiles (V2)., submitted to Earth Syst. Sci. Data, 2026
description: This work was supported by the NERC SISLAC (NE/R001782/1), inHALE (InHALE (NE/X003450/1 and LSO3 (NE/V0011863/1) projects.
DOI: 10.5281/zenodo.7684576
title: TCOM-O3: TOMCAT CTM and Occultation Measurements based daily ozone  profile data set

description: The TOMCAT simulation was conducted at a T64L32 resolution, consistent with previous work by Dhomse and Chipperfield (2023), covering the period from 2000 to 2024. These simulations utilized ERA-5 reanalysis data.

O3 Profile Processing and Bias Correction

Collocated O3 profiles are organized into five distinct latitude bins:



NH polar: 90∘N - 50∘N

NH mid-lat: 20∘N - 70∘N

Tropics: 40∘S - 40∘N

SH mid-lat: 70∘S - 20∘S

SH polar: 90∘S - 50∘S


 Initially, TOMCAT tracers are interpolated on the ACE FTS height (1km to 50km) Separate XGBoost regression models are trained to predict ACE FTS measurements for a given altitude /latitude bin if more than 2000 measurements are available. XGBoost model is then used to estimate O3 volume mixing ratios for all the TOMCAT grids.  Height resolved data are then interpolated on 22-pressure levels. For overlapping latitude bins, we use averages and then calculate daily zonal mean values.  For more details see attached presentation.

Dataset also includes two files containing daily mean zonal mean O3 profiles on height (1-50 km) and pressure (300-1 hPa) – 22 levels (9132 days/64 latitudes). Files also include uncertainties estimated using quantile regression and uncertainty = NaN means data is from TOMCAT CTM (scientifically useful range 5 to 25km).

zmo3_tcom_hlev_2000-2024_V2.0.nc – height level data (1 to 50 km)

zmo3_tcom_plev_2000-2024_V2.0.nc – pressure level data (300 to 1 hPa)

Daily 3D profiles on height and pressure levels would be made available on request. Xarrays “resample” can be used to get monthly means.

(Attached pdf file gives more details. This data set improves from our previous methodology (Dhomse and Chipperfield, 2023, ESSD) and manuscript describing to those updates is submitted to ESSD as Dhomse and Chipperfield, 2026.

 

Reference Publications

This methodology, incorporating only ACE-FTS data and various minor algorithmic developments, is based on the following publication:

Dhomse, S. S. and Chipperfield, M. P.: Using machine learning to construct TOMCAT model and occultation measurement-based stratospheric methane (TCOM-CH4) and nitrous oxide (TCOM-N2O) profile data sets, Earth Syst. Sci. Data, 15, 5105–5120, https://doi.org/10.5194/essd-15-5105-2023, 2023

Dhomse, S. S. and Chipperfield, M. P.: TCOM-CFC11 and TCOM-CFC12: A Gap-Free, Observationally Constrained Global Dataset of Stratospheric CFC11 and CFC12 Profiles (V2)., submitted to Earth Syst. Sci. Data, 2026
description: This work was supported by the NERC SISLAC (NE/R001782/1), inHALE (InHALE (NE/X003450/1 and LSO3 (NE/V0011863/1) projects.
DOI: 10.15156/bio/sh0175487.10fu
title: SH0175487.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175488.10fu
title: SH0175488.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175489.10fu
title: SH0175489.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175490.10fu
title: SH0175490.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0175491.10fu
title: SH0175491.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.bxn2gg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Material citation, Specimen, Living Specimen)",
 "Geometry POLYGON((99.49023 19.64234,99.56353 19.64234,99.56353 19.68139,99.49023 19.68139,99.49023 19.64234))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146484-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtgb7d
title: Occurrence Download

description: A dataset containing 7083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Patagioenas nigrirostris (P.L.Sclater, 1860)"
 ]
}

 The dataset includes 7083 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kadv7u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Mobula hypostoma)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146501-230224095556074/datasets/export for details.
DOI: 10.15468/dl.j6giqv
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Pelobatidae",
 "TaxonKey is Ranidae",
 "TaxonKey is Hylidae",
 "TaxonKey is Caudata"
 ]
 },
 "Geometry POLYGON((-97.531127 37.042024,-97.531127 35.871246,-95.262451 35.871246,-95.262451 37.042024,-97.531127 37.042024))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 741 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx4u9w
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corybas subalpinus P.Royen"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146487-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zoapx
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Culicivora caudacuta (Vieillot, 1818)"
 ]
}

 The dataset includes 252 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zqpnr
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corybas undulatus (R.Cunn.) Rupp"
 ]
}

 The dataset includes 144 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146502-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jmu2c
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cussonia thyrsiflora Thunb."
 ]
}

 The dataset includes 212 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gakas3
title: Occurrence Download

description: A dataset containing 49927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 65.07073733333334, 35.924964333333335 82.15736799999999, 1.8796086666666671 82.15736799999999, 1.8796086666666671 65.07073733333334, 35.924964333333335 65.07073733333334))",
 "EventDate is 2020-04-01,2020-04-30"
 ]
}

 The dataset includes 49927 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026888-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25752561
title: 2024 01 18 Carranza

description: Field notes including image and/or video records.
DOI: 10.6084/m9.figshare.25752561.v1
title: 2024 01 18 Carranza

description: Field notes including image and/or video records.
DOI: 10.15468/dl.vmvqxf
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corybas vespertilionis P.Royen"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146516-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cedgbt
title: Occurrence Download

description: A dataset containing 1718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Pulicaria canariensis subsp. lanata Bramwell & G.Kunkel",
 "TaxonKey is Pulicaria crispa (Forssk.) Benth. ex Oliv.",
 "TaxonKey is Quercus ×alpestris Boiss.",
 "TaxonKey is Quercus pauciradiata Penas, Llamas, Pérez Morales & Acedo",
 "TaxonKey is Ranunculus alnetorum W.Koch",
 "TaxonKey is Ranunculus bupleuroides subsp. bupleuroides",
 "TaxonKey is Ranunculus bupleuroides subsp. cherubicus J.A.Sánchez Rodr., M.J.Elías & M.A.Martín",
 "TaxonKey is Ranunculus carlittensis (Sennen) Grau",
 "TaxonKey is Ranunculus envalirensis Grau",
 "TaxonKey is Ranunculus lingua L.",
 "TaxonKey is Ranunculus montserratii Grau",
 "TaxonKey is Ranunculus parnassiifolius subsp. muniellensis Bueno Sánchez, Fern.Casado & Fern.Prieto",
 "TaxonKey is Ranunculus polyanthemophyllus W.Koch & H.E.Hess",
 "TaxonKey is Ranunculus seguieri Vill.",
 "TaxonKey is Ranunculus valdesii Grau",
 "TaxonKey is Reseda hookeri Guss.",
 "TaxonKey is Reseda jacquinii subsp. litigiosa (Sennen & Pau) Abdallah & de Wit",
 "TaxonKey is Rhamnus legionensis Rothm.",
 "TaxonKey is Rhodanthemum hosmariense (Ball) B.H.Wilcox, K.Bremer & Humphries",
 "TaxonKey is Rhus albida Greene",
 "TaxonKey is Rhynchospora fusca Linnaeus, 1763",
 "TaxonKey is Rhynchospora modesti-lucennoi Castrov.",
 "TaxonKey is Rorippa amphibia (L.) Besser",
 "TaxonKey is Rorippa valdes-bermejoi (Castrov.) Mart.-Laborde & Castroviejo",
 "TaxonKey is Rosmarinus tomentosus Hub.-Mor. & Maire",
 "TaxonKey is Rothmaleria granatensis (Boiss. ex DC.) Font Quer",
 "TaxonKey is Rubia balearica subsp. caespitosa (Font Quer & Marcos) Rosselló, L.Sáez & Mus",
 "TaxonKey is Rubus bollei Focke",
 "TaxonKey is Rubus cyclops Mon.-Huelin",
 "TaxonKey is Rubus lucensis H.E.Weber & Mon.-Huelin",
 "TaxonKey is Rubus palmensis A.Hansen",
 "TaxonKey is Rubus pauanus Mon.-Huelin",
 "TaxonKey is Rubus peratticus Samp.",
 "TaxonKey is Rumex hydrolapathum (Scop.) Huds.",
 "TaxonKey is Rumex rupestris Le Gall",
 "TaxonKey is Rumex scutatus subsp. gallaecicus Lago",
 "TaxonKey is Rupicapnos africana Pugsley",
 "TaxonKey is Ruta oreojasme Webb & Berthel.",
 "TaxonKey is Ruta microcarpa Svent.",
 "TaxonKey is Rutheopsis herbanica (Bolle) A.Hansen & G.Kunkel"
 ]
 }
 ]
}

 The dataset includes 1718 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e98kzb
title: Occurrence Download

description: A dataset containing 106525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alces Gray, 1821",
 "Year 1901-2023"
 ]
}

 The dataset includes 106525 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026895-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.autpd5
title: Occurrence Download

description: A dataset containing 5749 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NX-Criptogamos - Herbário Nova Xavantina"
 ]
}

 The dataset includes 5749 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u349gf
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cladolabes aciculus (Semper, 1867)"
 ]
}

 The dataset includes 60 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053819-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e0tvtm
title: Occurrence Download

description: A dataset containing 2244 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gloriosa superba L."
 ]
}

 The dataset includes 2244 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.