cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3583101
title: Sample based prevalence data complementing the European Union One Health 2018 Zoonoses Report

description: This dataset contains monitoring sample based data on zoonoses and zoonotic agents under the Directive 2003/99/EC. This Directive requires Member Sates (MSs) to collect, evaluate and report data on zoonoses and zoonotic agents. MSs can also report monitoring data and information on some other pathogenic microbiological agentsin foodstuffs. Relevant EU legislation is:Commission Regulation (EC) No 2073/2005,Commission Regulation (EC) No 1441/2007, Commission Regulation (EU) No 1086/2011, Commission Regulation (EU) No 209/2013, Commission Regulation(EU) No 217/2014.
description: EU; csv; zoonoses_support@efsa.europa.eu
DOI: 10.17632/r8ynb4s6s4.1
title: Rational Understandings of α-C–H Functionalization of Tertiary-amines: Energetic Studies by a New Strategy. Wenzhi Luo et al

description: Functionalization of α-C–H bonds of tertiary-amines to build various α-C–X bonds has become a mainstream in synthetic chemistry. However, due to lack of fundamental knowledge on α-C–H bond strength, rational exploration of new synthetic methodologies remains a far-reaching anticipation. Herein, we report a unique hydricity-based approach to establish the first integrated scale covering both the homolytic and heterolytic energies of α-C–H bonds for 45 representative tertiary-amines and their radical cations. As showcased from the studies on tetrahydroisoquinolines (THIQs) by virtue of the thermodynamic criteria, the feasibility and mechanisms of THIQ oxidation were deduced, and indeed, were found to correspond well with experimental observations. This energetic scale actually provides a good example among the α-C–H categories to relate the bond thermodynamics with mechanisms/reactivity of their α-C–H transformation, and hence, may be referenced for analyzing similar structure-property problems for a wide variety of analogous systems.
DOI: 10.17632/www6jzh87j.1
title: Preparation and Characterization of Magnesium Phthalocyanine/TiO2 Nanotube Arrays Composites and Their Photodegradation for Glyphosate under Visible Light

description: magnesium phthalocyanine/TiO2 nanotube arrays (MgPc/TNAs) composites were prepared by electrodeposition method. The composites were characterized by scanning electron microscopy, X-ray diffraction, X-ray photoelectron spectroscopy, UV-vis diffuse reflectance spectroscopy, electrochemical impedance spectroscopy and electron spin resonance. Rhodamine B was used as the target to optimize the preparation conditions of MgPc/TNAs composites.On this basis, the photocatalytic degradation of glyphosate was studied.
DOI: 10.17632/8rggb38ybx.1
title: Characterisation of the complete plastid genome of Astelia australiana (J.H.Willis) L.B.Moore (Asteliaceae, Asparagales).

description: This project produced the complete chloroplast genome for Astelia australiana. It contains the circular annotated cpDNA sequence and the CDS-based alignment used to generate the phylogeny.
DOI: 10.18169/papdeott008248
title: Elektro-chemische Energiespeicher sowie thermische Behandlungsanlage
DOI: 10.18169/papdeott008249
title: Elektro-chemische Energiespeicherzelle sowie Entladungsvorrichtung dafür
DOI: 10.18169/papdeott008250
title: Elektro-chemische Energiespeicher sowie thermische Behandlungsanlage
DOI: 10.5281/zenodo.3581173
title: PacBio Simulation CRAM files for "Characterization of large-scale structural variants using Linked-Reads" (Part 1 of 2)

description: Here we propose novel algorithms to characterize large (&gt;40 Kbp) interspersed segmental duplications, (&gt; 80 Kbp) inversions, (&gt; 100 Kbp) deletions, and (&gt; 100 Kbp) translocations using Linked-Read sequencing data. Linked-Read sequencing provides long range information, where Illumina reads are tagged with barcodes that can be used to assign short reads to pools of larger (30-50 Kbp) molecules. <br> Our methods rely on split molecule sequence signature that we have previously described. Similar to the split read, split molecules refer to large segments of DNA that span an SV breakpoint. Therefore, when mapped to the reference genome, the mapping of these segments would be discontinuous. <br> We redesign our earlier algorithm, VALOR, to specifically leverage Linked-Read sequencing data to discover large <br> structural variation. We implement our new algorithms in a new software package, called VALOR2.
description: PacBio simulation CRAM files. Aligned to GRCh37 using NGMLR - Part 1. Part 2 is available at 10.5281/zenodo.3582131 Simulation fasta and truth files available at 10.5281/zenodo.3380054
DOI: 10.5281/zenodo.3582918
title: Supplementary Files for RIDE Review of Juxta Web Service, LERA, and Variance Viewer

description: Test datasets and result files for review on web based collation tools <em>Juxta Web Service</em>, <em>LERA</em>, and <em>Variance Viewer</em> (see RIDE issue on Tools and Environments for Digital Scholarly Editing). The first dataset (lorem-*) are constructed dummy texts in TEI, based on filler texts. They cover some basic cases of textual variance. The second dataset (hamlet-*) is based on a TEI encoded version of Shakespeare's <em>Hamlet</em>, taken from The Shakespeare Quartos Archive (CC BY-NC 2.0), with a simplified baseline encoding. The result files (result-*) were produced with the web based collation tools mentioned above. The LERA results are available in PDF, while the other two tools provided TEI-XML. There is an extra configuration file for Variance Viewer.
DOI: 10.5281/zenodo.3582919
title: Supplementary Files for RIDE Review of Juxta Web Service, LERA, and Variance Viewer

description: Test datasets and result files for review on web based collation tools <em>Juxta Web Service</em>, <em>LERA</em>, and <em>Variance Viewer</em> (see RIDE issue on Tools and Environments for Digital Scholarly Editing). The first dataset (lorem-*) are constructed dummy texts in TEI, based on filler texts. They cover some basic cases of textual variance. The second dataset (hamlet-*) is based on a TEI encoded version of Shakespeare's <em>Hamlet</em>, taken from The Shakespeare Quartos Archive (CC BY-NC 2.0), with a simplified baseline encoding. The result files (result-*) were produced with the web based collation tools mentioned above. The LERA results are available in PDF, while the other two tools provided TEI-XML. There is an extra configuration file for Variance Viewer.
DOI: 10.5281/zenodo.3583102
title: Tandem Tag Assay Optimized for Semi-automated in vivo Autophagic Activity Measurement in Arabidopsis thaliana roots

description: This is demo data set for AuTToFlux, the semi-automated assay for <em>in vivo</em> autophagic activity measurement in <em>Arabidopsis thaliana</em> roots. The protocol and software required for the assay are available here: https://github.com/jonasoh/AuTToFlux
DOI: 10.17632/j7cncgsvr5.2
title: Public Speaking Anxiety

description: Public speaking anxiety VR project raw data
DOI: 10.17632/knwttdwv5b.1
title: Raw GNSS data from forest (four points) and open area (one point)

description: Data acquired using Xiaomi Mi 8 smartphone on one point under open-area conditions and four points in forest (GEOP*). One-hour observation time. Including base station data (BBYS*). Navigation data from base station or provided by NASA (brdm*).
DOI: 10.17632/wy5ytmr2g5.3
title: Protective effect of epigallocatechin-3-gallate (EGCG) on toxic metalloproteinases-mediated skin damage induced by Scyphozoan jellyfish envenomation

description: Jellyfish collection and preparation The specimens of N. nomurai jellyfish were captured from the Korea Strait along the coasts of Geoje in September, 2012. Only tentacles were collected in ice and transferred immediately to a laboratory for further preparation. Nematocysts were isolated from the dissected tentacles as described by a Bloom method with slight modification (Bloom, Burnett and Alderslade, 1998). In brief, dissected tentacles were rinsed with cold seawater to remove debris. The tentacles were placed in three volumes of cold seawater for 24 h with gentle swirling for 1 h once daily at 4°C. After autolysis for 24 h at 4°C, the supernatant was collected and centrifuged at 4,000 g for 10 min and the settled material was resuspended in fresh seawater and set for autolysis for 24 h. This process was repeated for 3 days. The sediments were collected and centrifuged 4,000 g for 10 min and washed several times with fresh distilled water by centrifugation 100 g at 4°C for 5 min until debris around nematocysts was almost removed. Finally, the undischarged nematocysts were collected, lyophilized and stored at -70°C until use.
DOI: 10.18169/papdeott008251
title: Aufbereitungsanlage
DOI: 10.5281/zenodo.3582130
title: PacBio Simulation CRAM files for "Characterization of large-scale structural variants using Linked-Reads" (Part 2 of 2)

description: Here we propose novel algorithms to characterize large (&gt;40 Kbp) interspersed segmental duplications, (&gt; 80 Kbp) inversions, (&gt; 100 Kbp) deletions, and (&gt; 100 Kbp) translocations using Linked-Read sequencing data. Linked-Read sequencing provides long range information, where Illumina reads are tagged with barcodes that can be used to assign short reads to pools of larger (30-50 Kbp) molecules. <br> Our methods rely on split molecule sequence signature that we have previously described. Similar to the split read, split molecules refer to large segments of DNA that span an SV breakpoint. Therefore, when mapped to the reference genome, the mapping of these segments would be discontinuous. <br> We redesign our earlier algorithm, VALOR, to specifically leverage Linked-Read sequencing data to discover large <br> structural variation. We implement our new algorithms in a new software package, called VALOR2.
description: PacBio simulation CRAM files. Aligned to GRCh37 using NGMLR - Part 2. Part 1 is available at 10.5281/zenodo.3581174 Simulation fasta and truth files available at 10.5281/zenodo.3380054
DOI: 10.5281/zenodo.3582131
title: PacBio Simulation CRAM files for "Characterization of large-scale structural variants using Linked-Reads" (Part 2 of 2)

description: Here we propose novel algorithms to characterize large (&gt;40 Kbp) interspersed segmental duplications, (&gt; 80 Kbp) inversions, (&gt; 100 Kbp) deletions, and (&gt; 100 Kbp) translocations using Linked-Read sequencing data. Linked-Read sequencing provides long range information, where Illumina reads are tagged with barcodes that can be used to assign short reads to pools of larger (30-50 Kbp) molecules. <br> Our methods rely on split molecule sequence signature that we have previously described. Similar to the split read, split molecules refer to large segments of DNA that span an SV breakpoint. Therefore, when mapped to the reference genome, the mapping of these segments would be discontinuous. <br> We redesign our earlier algorithm, VALOR, to specifically leverage Linked-Read sequencing data to discover large <br> structural variation. We implement our new algorithms in a new software package, called VALOR2.
description: PacBio simulation CRAM files. Aligned to GRCh37 using NGMLR - Part 2. Part 1 is available at 10.5281/zenodo.3581174 Simulation fasta and truth files available at 10.5281/zenodo.3380054
DOI: 10.17632/5gfwm7s3c2.4
title: campaigns

description: VOCs,particles
DOI: 10.17632/vzgv93rr8z.1
title: GNSS receiver data from Svalbard, Norway

description: TEC and scintillation data from GPS and GLONASS receivers at Bjørnøya, Hopen, Longyearbyen and Ny-Ålesund (all Svalbard, Norway) for selected events 2014-2017. See readme file for info.
DOI: 10.17632/vzgv93rr8z.2
title: GNSS receiver data from Svalbard, Norway

description: TEC and scintillation data from GPS and GLONASS receivers at Bjørnøya, Hopen, Longyearbyen and Ny-Ålesund (all Svalbard, Norway) for selected events 2014-2017. See readme file for info.
DOI: 10.17632/vhds87r252.2
title: Monitoring udder health status using somatic cell counts in Iranian Holstein-Friesian dairy cows

description: The present study was performed to provide update information about udder health as determined by SCC in Iranian Holstein-Friesian dairy cattle, and to compare results with herds under a mastitis control program.
DOI: 10.26300/sbx2-az45
title: Achieving Health Equity in Preventive Services
DOI: 10.5281/zenodo.3565773
title: Setup of the 2010 Darfield earthquake for SeisSol

description: Dynamic rupture setup of the 2010 Darfield earthquake built for SeisSol (https://github.com/SeisSol/SeisSol/). <strong>SeisSol version</strong> This setup is built for SeisSol version 479583792e651bf18bd582f71254722ee023ca07.<br> Fault segments are distinguished by using the fault tagging feature<br> (see https://seissol.readthedocs.io/en/latest/fault-tagging.html). In essence,<br> boundary conditions 3, 7, 8, 9, 10, 11, and 12 are all interpreted as fault and<br> each number marks a fault segment. However, fault tagging is experimental and<br> this behaviour might change in future versions of SeisSol. In case the fault tags<br> need to be adjusted, make sure to edit meshing_options.xml and re-generate the mesh,<br> and edit initial_stress.yaml. <strong>Projection</strong> EPSG:32759 <strong>File list</strong> - Darfield.h5<br> Mesh with 98113814 elements.<br> - fault_cad_model.geo<br> CAD model of the fault geometry for Gmsh.<br> - initial_stress.yaml<br> material.yaml<br> fault.yaml<br> Material model and fault parameterisation with easi.<br> - meshing_options.xml<br> Meshing options to generate the mesh with PUMGen (https://github.com/SeisSol/PUMGen/tree/xml).<br> - Qp.nc<br> Qs.nc<br> vel_model.nc<br> 3D material model on uniform grid (lambda, mu, rho, Qp, Qs).<br> - roughness0.nc<br> roughness1.nc<br> roughness2.nc<br> roughness3.nc<br> roughness4.nc<br> roughness5.nc<br> Relative pre-stress ratio for the six fault segments.<br> - Darfield.smd<br> CAD model with topography. Opens with SimModeler from Simmetrix and is passed to<br> PUMGen for mesh generation.<br> - parameters.par<br> Settings for invoking SeisSol.<br> - receivers.txt<br> Position of synthetic seismographs.
DOI: 10.5281/zenodo.3565774
title: Setup of the 2010 Darfield earthquake for SeisSol

description: Dynamic rupture setup of the 2010 Darfield earthquake built for SeisSol (https://github.com/SeisSol/SeisSol/). <strong>SeisSol version</strong> This setup is built for SeisSol version 479583792e651bf18bd582f71254722ee023ca07.<br> Fault segments are distinguished by using the fault tagging feature<br> (see https://seissol.readthedocs.io/en/latest/fault-tagging.html). In essence,<br> boundary conditions 3, 7, 8, 9, 10, 11, and 12 are all interpreted as fault and<br> each number marks a fault segment. However, fault tagging is experimental and<br> this behaviour might change in future versions of SeisSol. In case the fault tags<br> need to be adjusted, make sure to edit meshing_options.xml and re-generate the mesh,<br> and edit initial_stress.yaml. <strong>Projection</strong> EPSG:32759 <strong>File list</strong> - Darfield.h5<br> Mesh with 98113814 elements.<br> - fault_cad_model.geo<br> CAD model of the fault geometry for Gmsh.<br> - initial_stress.yaml<br> material.yaml<br> fault.yaml<br> Material model and fault parameterisation with easi.<br> - meshing_options.xml<br> Meshing options to generate the mesh with PUMGen (https://github.com/SeisSol/PUMGen/tree/xml).<br> - Qp.nc<br> Qs.nc<br> vel_model.nc<br> 3D material model on uniform grid (lambda, mu, rho, Qp, Qs).<br> - roughness0.nc<br> roughness1.nc<br> roughness2.nc<br> roughness3.nc<br> roughness4.nc<br> roughness5.nc<br> Relative pre-stress ratio for the six fault segments.<br> - Darfield.smd<br> CAD model with topography. Opens with SimModeler from Simmetrix and is passed to<br> PUMGen for mesh generation.<br> - parameters.par<br> Settings for invoking SeisSol.<br> - receivers.txt<br> Position of synthetic seismographs.
DOI: 10.17632/pmh54g7nxf.1
title: Do self-affirmation interventions improve wellbeing? A systematic review and meta-analysis

description: Self-affirmation interventions are effective in education and health messages and may have their influence partly by improving wellbeing, but research findings have been mixed. To investigate whether self-affirmations improve wellbeing, a systematic review and meta-analysis was conducted. Six databases and grey literature were searched from commencement until April 2019. This data set includes the search terms for databases, raw data used within the meta-analysis and Revman outputs.
DOI: 10.17632/x5gfxgbrkt.1
title: Synthesis and inhibition of a high-effective and green corrosion inhibitor for N80 steel in hydrochloric acid solution

description: Synthesis and inhibition of a high-effective and green corrosion inhibitor for N80 steel in hydrochloric acid solution
DOI: 10.18739/a2np1wj65
title: Predicting sediment organic carbon and related food web types from a physical oceanographic model on a subarctic shelf- South of St. Lawrence Island, 2006-2007

description: In changing environments, conservation planning for bottom-feeding marine predators requires estimating the present and future spatial patterns of benthic communities. In the northern Bering Sea, we used the Regional Ocean Modeling System (ROMS) to hindcast near-bottom flows that redistribute settled phytodetritus and organic sediments, which in turn strongly affect the dispersion of three food web types that differentially favor spectacled eiders Somateria fischeri, walruses Odobenus rosmarus, or gray whales Eschrichtius robustus. Using data collected between 1994 and 2010, we interpolated spatial patterns of sediment organic carbon from field samples and correlated them with water depths and modeled flow velocities, temperatures, and salinities. In the deeper (mean 63 meters) southern study area with weak net flows, hindcast near-bottom currents had negligible effects on patterns of sediment longer-term organic carbon (LTOC); instead, regional depth gradients and local bathymetry were the best predictors (r2 = 0.72–0.85 among 7 years). In that area, climatic variations in total primary production would affect the areal extent of different LTOC levels, but not the core locations of persistent patches defined by depth. In the shallower (mean 39 meters) northern study area with much faster flows, seafloor depth had negligible effects and patterns of LTOC depended mainly on currents (r2 = 0.48–0.55 over 2 years) that are subject to climatic changes in winds. Based on ranges of LTOC for different food web types, substantial portions of both areas must be conserved to ensure annual availability of all three types. Regional ocean circulation models driven by downscaled climate models provide important opportunities for projecting spatial patterns of key benthic habitats in this region.
DOI: 10.5281/zenodo.3582934
title: Data and code for publication: zu Ermgassen et al., "Using supply chain data to monitor zero deforestation commitments: an assessment of progress in the Brazilian soy sector"

description: Data and code for the publication zu Ermgassen et al., "Using supply chain data to monitor zero deforestation commitments: an assessment of progress in the Brazilian soy sector". This includes one data file (zdc-monitoring.rdata) and three scripts, to be run in [R]:<br> 01_PREPARE_DATA.R - Loads the data (from a user-specified location) and then produces summary data which are called in subsequent scripts.<br> 02_PLOT_FIGURES.R - Reproduces all figures in the manuscript.<br> 03_KEY_STATISTICS.R - Reproduces all statistics quoted in the manuscript, which are based on the Trase data. More detailed descriptions of the data contents and scripts are given in the README.md file.
description: E.K.H.J.zE was supported by FORMAS Grant n° 2016-351, "Assessing the influence of leakage on the effectiveness of interventions to improve the sustainability of agricultural commodity supply chains" and a F.R.S.-FNRS postdoctoral fellowship (CR n° 1.B.452.19).
DOI: 10.5519/qd.zglrqtr7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (741762 records)
DOI: 10.18739/a24m91b0x
title: Limits to benthic feeding by eiders in a vital Arctic migration corridor due to localized prey and changing sea ice, Alaska, 2001-2013

description: Four species of threatened or declining eider ducks that nest in the Arctic migrate through the northeast Chukchi Sea, where anticipated industrial development may require prioritizing areas for conservation. In this nearshore corridor (10–40 m depth), the eiders’ access to benthic prey during the spring is restricted to variable areas of open water within sea ice. For the most abundant species, the king eider (Somateria spectabilis), stable isotopes in blood cells, muscle, and potential prey indicate that these eiders ate mainly bivalves when traversing this corridor. Bivalves there were much smaller than the same taxa in deeper areas of the northern Bering Sea, possibly due to higher mortality rates caused by ice scour in shallow water; future decrease in seasonal duration of fast ice may increase this effect. Computer simulations suggested that if these eiders forage for greater than 15 hours per day, they can feed profitably at bivalve densities greater than 200 meters\0022 regardless of water depth or availability of ice for resting. Sampling in 2010–2012 showed that large areas of profitable prey densities occurred only in certain locations throughout the migration corridor. Satellite data in April–May over 13 years (2001–2013) indicated that access to major feeding areas through sea ice in different segments of the corridor can vary from 0% to 100% between months and years. In a warming and increasingly variable climate, unpredictability of access may be enhanced by greater effects of shifting winds on unconsolidated ice. Our results indicate the importance of having a range of potential feeding areas throughout the migration corridor to ensure prey availability in all years. Spatial planning of nearshore industrial development in the Arctic, including commercial shipping, pipeline construction, and the risk of released oil, should consider these effects of high environmental variability on the adequacy of habitats targeted for conservation. The RAR files contain geodatabases.