cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.d6pe1f
title: FAIRsharing record for: The Environmental System Science Data Infrastructure for a Virtual Ecosystem
title: ESS-DIVE

description: This FAIRsharing record describes:  The U.S. Department of Energy’s (DOE) Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) is a data repository for Earth and environmental science data. ESS-DIVE is funded by the Data Management program within the Climate and Environmental Science Division under the DOE’s Office of Biological and Environmental Research program (BER), and is maintained by the Lawrence Berkeley National Laboratory. ESS-DIVE archives and publicly shares data obtained from observational, experimental, and modeling research that is funded by the DOE’s Office of Science under its Subsurface Biogeochemical Research (SBR) and Terrestrial Ecosystem Science (TES) programs within the Environmental Systems Science (ESS) activity. The mission of ESS-DIVE is to preserve, expand access to, and improve usability of critical data generated through DOE-sponsored research of terrestrial and subsurface ecosystems in support of the DOE’s efforts to address some of society’s most pressing energy and environmental challenges.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.srp8p7
title: FAIRsharing record for: Dynamic Ecological Information Management System - Site and Dataset Registry
title: DEIMS-SDR

description: This FAIRsharing record describes:  DEIMS-SDR (Dynamic Ecological Information Management System - Site and Dataset Registry) is an information management system for the discovery of long-term environmental research and monitoring facilities around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR includes metadata such as site location, ecosystem, facilities, parameters measured and research themes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zkahvn
title: FAIRsharing record for: DNA Methylation Interactive Visualization Database
title: DNMIVD

description: This FAIRsharing record describes:  DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan-meQTL and HACER databases.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ea591a
title: FAIRsharing record for: Canada Vigilance Adverse Reaction Online Database
title: null

description: This FAIRsharing record describes:  The Canada Vigilance Adverse Reaction Online Database contains information about suspected adverse reactions (also known as side effects) to health products. Adverse reaction reports are submitted by: consumers and health professionals, who submit reports voluntarily; and manufacturers and distributors (also known as market authorization holders), who are required to submit reports according to the Food and Drugs Act. Data is stored from 1965 onwards.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.sntbua
title: FAIRsharing record for: MAR databases
title: MAR

description: This FAIRsharing record describes:  The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fiykcp
title: FAIRsharing record for: EMODnet Seabed Habitats
title: null

description: This FAIRsharing record describes:  EMODnet Seabed Habitats provides free access to data and data products on the extent and distribution of seabed habitats in all European regional seas. The European Marine Observation and Data Network (EMODnet) is a network of organisations supported by the EU’s integrated maritime policy.

description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.o7ukum
title: FAIRsharing record for: Heart Diseases related Noncoding RNA Database
title: HDncRNA

description: This FAIRsharing record describes:  The Heart Disease-related Non-coding RNAs Database (HDncRNA) provides information about common heart diseases and their related noncoding RNAs. The HDncRNA database contains manually annotated associations of ncRNAs with heart disease. Sources of data in this database are published articles, ncRNA databases and public RNA-seq datasets.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.0hsbor
title: FAIRsharing record for: A database for spatially resolved transcriptomes
title: SpatialDB

description: This FAIRsharing record describes:  Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved transcriptomic data from published papers, aiming to provide a comprehensive and accurate resource of spatial gene expression profiles in tissues. Currently, SpatialDB contains detailed information of 24 datasets generated by 8 spatially resolved transcriptomic techniques. SpatialDB allows users to browse the spatial gene expression profile of all the 8 techniques online and compare the spatial gene expression profile of any two datasets generated by the same or different techniques side by side. It provides spatially variable (SV) genes identified by SpatialDE and trendsceek, as well as functional enrichment annotation of SV genes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.3xwmon
title: FAIRsharing record for: PathBank
title: PathBank

description: This FAIRsharing record describes:  PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.anr6qz
title: FAIRsharing record for: BIOchemical PathwaY DataBase
title: BIOPYDB

description: This FAIRsharing record describes:  BIOPYDB is a manually-curated database of human cell specific biochemical pathway data. The information within BIOPYDB is primarily extracted from published scientific literature and a selection of databases. The reconstructed pathways contain information about proteins, protein complexes, inorganic molecules, mutated and onco-proteins of signalling, disease and immunological pathways. Every molecule and interaction listed in the database contains at least one reference in a peer reviewed journal.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.pd1pet
title: FAIRsharing record for: Blackfynn Discover
title: null

description: This FAIRsharing record describes:  Blackfynn Discover is a public resource for accessing large public Neuroscience datasets. Blackfynn Discover was developed through grants from the NIH NIDA, NIH CommonFund, DARPA, and others to provide a sustainable solution for fostering collaboration in the Neurosciences.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.x38d2k
title: FAIRsharing record for: BioImage Archive
title: BioImage Archive

description: This FAIRsharing record describes:  The BioImage Archive stores and distributes biological images that are useful to life-science researchers. Its development will provide data archiving services to the broader bioimaging database community. This includes added-value bioimaging data resources such as EMPIAR, Cell-IDR and Tissue-IDR.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.4sj3ve
title: FAIRsharing record for: iProX
title: iProX

description: This FAIRsharing record describes:  iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based proteome data submission process and open sharing of mass spectrometry-based proteomics datasets. iProX is a member of the ProteomeXchange (PX) consortium.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.5a0922
title: FAIRsharing record for: YeastCyc
title: YeastCyc

description: This FAIRsharing record describes:  YeastCyc is a Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae S288c. In addition to genomic information, the database contains metabolic pathway, reaction, enzyme, and compound information, which has been manually curated from the scientific literature.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fwfggf
title: FAIRsharing record for: PhenoDis
title: PhenoDis

description: This FAIRsharing record describes:  PhenoDis is a manually annotated database providing symptomatic, genetic and imprinting information about rare cardiac diseases. PhenoDis is primarily concerned with the assignment of clinical symptoms to rare diseases using the biomedical literature as information source and the Human Phenotype Ontology (HPO) as vocabulary. 

description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.xukfh7
title: FAIRsharing record for: Mitochondrial Disease Sequence Data Resource
title: MSeqDR

description: This FAIRsharing record describes:  The Mitochondrial Disease Sequence Data Resource (MSeqDR) is a centralized genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. It integrates community knowledge from expert‐curated databases with genomic and phenotype data shared by clinicians and researchers.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.etxuek
title: FAIRsharing record for: MiST 4.0: Microbial Signal Transduction database
title: MiST

description: This FAIRsharing record describes:  Signal transduction systems in bacteria and archaea link environmental stimuli to specific adaptive cellular responses. They control gene expression, motility, biofilm formation, development and other processes that are vital to survival. The microbial signal transduction (MiST) database is an online resource that stores tens of thousands of genomes and allows users to explore their signal transduction profiles, analyze genomes in bulk using the database application programming interface (API) and make testable hypotheses about the functions of newly identified signaling systems. However, signal transduction in metagenomes remained completely unexplored. To lay the foundation for research in metagenomic signal transduction, we have prepared a new release of the MiST database, MiST 4.0, which features over 10 000 metagenome-assembled genomes (MAGs), a scaled representation of proteins and detailed BioSample information. In addition, several thousand new genomes have been processed and added to the database, bringing the total to over 202,000 genomes now available in MiST. A new interface has been developed that allows users to seamlessly switch between genomes and MAGs. Starting from MiST 4.0, the database incorporates updates to the NCBI taxonomy reflecting the inclusion of the rank "phylum" in the International Code of Nomenclature for Prokaryotes, which involved changes to 42 taxa.

MiST 4.0 is freely accessible at https://mistdb.com; genomes and MAGs can also be explored using the API available on the same page.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ohbpnw
title: FAIRsharing record for:  Comprehensive Resource of Mammalian protein complexes
title: CORUM

description: This FAIRsharing record describes:  CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (64%), mouse (16%) and rat (12%). Each protein complex is described by a protein complex name, subunit composition, function as well as the literature reference that characterizes the respective protein complex.

description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ymkbzx
title: FAIRsharing record for: Pathogen-Host Interaction Data integration and Analysis System
title: PHIDIAS

description: This FAIRsharing record describes:  PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals. The recently published Victors analysis program is a relatively independent system within the PHIDIAS database and analysis resource.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2c9d3c
title: FAIRsharing record for: Mouse Models of Human Cancer Database
title: MMHCdb

description: This FAIRsharing record describes:  The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of human cancers by providing access to information on and data for: spontaneous and induced tumors in mice, genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, genetic factors associated with tumor susceptibility in mice, somatic genetic-mutations observed in tumors, and Patient Derived Xenograft (PDX) models.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.c55071
title: FAIRsharing record for: RIKEN Arabidopsis Genome Encyclopedia II
title: RARGE II

description: This FAIRsharing record describes:  RARGE II provides basic information about the Arabidopsis genome, such as information related to cDNA sequences and transposon insertion mutants. To create it, publicly available information for a total of 66,209 Arabidopsis mutant lines was used, including loss-of-function (RATM and TARAPPER) and gain-of-function (AtFOX and OsFOX) lines, as well as phenotype data gained through the mapping of descriptions onto Plant Ontology (PO) and Phenotypic Quality Ontology (PATO) terms.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.hd7sxq
title: FAIRsharing record for: Brainstem Connectome
title: BC

description: This FAIRsharing record describes:  Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from over 1,000 peer-reviewed original research publications. It contains more than 35,000 specific experimental observations and over 18,000 neuronal connections.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rgcsw6
title: FAIRsharing record for: Chlamydiae Database
title: ChlamDB

description: This FAIRsharing record describes:  ChlamDB is a comparative genomics database covering the entire Chlamydiae phylum as well as their closest relatives belonging to the Planctomycetes-Verrucomicrobiae-Chlamydiae (PVC) superphylum. Genomes can be compared, analyzed and retrieved using accessions numbers of the most widely used databases including COG, KEGG ortholog, KEGG pathway, KEGG module, Pfam and InterPro. Candidate effectors of the Type III secretion system (T3SS) were identified using four in silico methods. The identification of orthologs among all PVC genomes allows users to perform large-scale comparative analyses and to identify orthologs of any protein in all genomes integrated in the database. Phylogenetic relationships of PVC proteins and their closest homologs in RefSeq, comparison of transmembrane domains and Pfam domains, conservation of gene neighborhood and taxonomic profiles can be visualized using dynamically generated graphs, available for download. As a central resource for researchers working on chlamydia, chlamydia-related bacteria, verrucomicrobia and planctomyces, ChlamDB facilitates the access to comprehensive annotations and integrates multiple tools for comparative genomic analyses.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.