cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11821017.v1
title: Additional file 1 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 1: Figure S1. Comparison of transcript expression with protein detection. A boxplot comparing the output of the RNA-seq analysis with the proteomic analysis is shown. All unigenes were categorized as either “Present” or “Absent” in the proteome (x axis) and plotted according to their transcription level (y axis) in terms of log (base 2) transformed TPM value. These data suggest that genes detected in the proteome had generally higher transcript expression compared to those proteins that were not detected.
DOI: 10.6084/m9.figshare.11821005
title: Additional file 15 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 15.Â P450 sequences. All P450 sequences identified in this study are listed in fasta format.
DOI: 10.6084/m9.figshare.11821011
title: Additional file 16 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 16.Â Transporter sequences. All transporter sequences identified in this study are listed in fasta format.
DOI: 10.6084/m9.figshare.11821005.v1
title: Additional file 15 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 15.Â P450 sequences. All P450 sequences identified in this study are listed in fasta format.
DOI: 10.6084/m9.figshare.11821011.v1
title: Additional file 16 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 16.Â Transporter sequences. All transporter sequences identified in this study are listed in fasta format.
DOI: 10.6084/m9.figshare.11820999
title: Additional file 14 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 14: Table S10. BUSCO Scores. The Benchmarking Universal Single-Copy Orthologs (BUSCO) scores for each of the stink bug gene sets used in this study are shown. For each stink bug the differnet outputs of BUSCO are shown including, Complete and single-copy, Complete and multi-copy, Fragmented, and Missing.
DOI: 10.6084/m9.figshare.11820999.v1
title: Additional file 14 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 14: Table S10. BUSCO Scores. The Benchmarking Universal Single-Copy Orthologs (BUSCO) scores for each of the stink bug gene sets used in this study are shown. For each stink bug the differnet outputs of BUSCO are shown including, Complete and single-copy, Complete and multi-copy, Fragmented, and Missing.
DOI: 10.6084/m9.figshare.11820990
title: Additional file 12 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 12:Â Table S8. P450 expression. A table is shown of all the P450s identified in our study. Corresponding information regarding sequence, P450 clan, name and expression values are also shown for each identified P450. NezVir_CYP6LV30 initially showed an extremely high TPM value (upwards of 2000), but manual inspection revealed this to be an artifact of the assembly, so it was excluded from the analysis.
DOI: 10.6084/m9.figshare.11820993
title: Additional file 13 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 13:Â Table S9. Transporter expression. The full list of nutrient transporters and their corresponding expression values are shown. The table is broken down into transporters which act on amino acids/peptides and sugars. Corresponding information about the family to which the transporter belongs is also included.
DOI: 10.6084/m9.figshare.11820987
title: Additional file 11 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 11:Â Table S7. P450 Comparison. A table is shown which indicates the accuracy of the P450 identification pipeline used in the current study. A list of species with P450s already annotated (see references) were used as targets for the pipeline. The table also indicates the number of P450s predicted by our pipeline and the number previously shown in the literature.
DOI: 10.6084/m9.figshare.11820990.v1
title: Additional file 12 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 12:Â Table S8. P450 expression. A table is shown of all the P450s identified in our study. Corresponding information regarding sequence, P450 clan, name and expression values are also shown for each identified P450. NezVir_CYP6LV30 initially showed an extremely high TPM value (upwards of 2000), but manual inspection revealed this to be an artifact of the assembly, so it was excluded from the analysis.
DOI: 10.6084/m9.figshare.11820993.v1
title: Additional file 13 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 13:Â Table S9. Transporter expression. The full list of nutrient transporters and their corresponding expression values are shown. The table is broken down into transporters which act on amino acids/peptides and sugars. Corresponding information about the family to which the transporter belongs is also included.
DOI: 10.6084/m9.figshare.11820987.v1
title: Additional file 11 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 11:Â Table S7. P450 Comparison. A table is shown which indicates the accuracy of the P450 identification pipeline used in the current study. A list of species with P450s already annotated (see references) were used as targets for the pipeline. The table also indicates the number of P450s predicted by our pipeline and the number previously shown in the literature.
DOI: 10.6084/m9.figshare.11820978
title: Additional file 10 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 10:Â Table S6. Gene Groups. A full list of all genes that were classified into one or more gene groups is shown. These groups were either derived from Fuzzy C-means clustering (Fig. 4) or from the top 500 most highly expressed genes in each tissue.
DOI: 10.6084/m9.figshare.11820978.v1
title: Additional file 10 of A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion

description: Additional file 10:Â Table S6. Gene Groups. A full list of all genes that were classified into one or more gene groups is shown. These groups were either derived from Fuzzy C-means clustering (Fig. 4) or from the top 500 most highly expressed genes in each tissue.
DOI: 10.6084/m9.figshare.11820969
title: Additional file 1 of Purifying selection of long dsRNA is the first line of defense against false activation of innate immunity

description: Additional file 1: Supplementary tables.
DOI: 10.6084/m9.figshare.11820969.v1
title: Additional file 1 of Purifying selection of long dsRNA is the first line of defense against false activation of innate immunity

description: Additional file 1: Supplementary tables.
DOI: 10.6084/m9.figshare.11820942
title: Additional file 2 of Novel citation-based search method for scientific literature: a validation study

description: Additional file 2. Supplementary data.
DOI: 10.6084/m9.figshare.11820942.v1
title: Additional file 2 of Novel citation-based search method for scientific literature: a validation study

description: Additional file 2. Supplementary data.
DOI: 10.6084/m9.figshare.11820873
title: Additional file 2 of Admixture-enabled selection for rapid adaptive evolution in the Americas

description: Additional file 2: Table S1. Ancestry enrichment test statistic values.
DOI: 10.6084/m9.figshare.11820873.v1
title: Additional file 2 of Admixture-enabled selection for rapid adaptive evolution in the Americas

description: Additional file 2: Table S1. Ancestry enrichment test statistic values.
DOI: 10.5517/ccdc.csd.cc24g50t
title: CCDC 1979815: Experimental Crystal Structure Determination

description: Related Article: Monotosh Mondal, Sumanta Jana, Michael G.B. Drew, Ashutosh Ghosh|2020|Polymer|204|122815|doi:10.1016/j.polymer.2020.122815
DOI: 10.5517/ccdc.csd.cc24g51v
title: CCDC 1979816: Experimental Crystal Structure Determination

description: Related Article: Monotosh Mondal, Sumanta Jana, Michael G.B. Drew, Ashutosh Ghosh|2020|Polymer|204|122815|doi:10.1016/j.polymer.2020.122815
DOI: 10.5517/ccdc.csd.cc24zqyt
title: CCDC 1995747: Experimental Crystal Structure Determination

description: Related Article: Anton A. Ivanov, Clément Falaise, Alexandra A. Shmakova, Nathalie Leclerc, Stéphane Cordier, Yann Molard, Yuri V. Mironov, Michael A. Shestopalov, Pavel A. Abramov, Maxim N. Sokolov, Mohamed Haouas, Emmanuel Cadot|2020|Inorg.Chem.|59|11396|doi:10.1021/acs.inorgchem.0c01160
DOI: 10.5517/ccdc.csd.cc25jt3n
title: CCDC 2012151: Experimental Crystal Structure Determination

description: Related Article: Yang Yuan, Ye Wang, Yuanyang Mu, Murong Xu, Siyi Fu, Lingkai Kong, Yanzhong Li|2020|Org.Lett.|22|6532|doi:10.1021/acs.orglett.0c02307
DOI: 10.6084/m9.figshare.11820786
title: Additional file 5 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 5: Table S4. The list of the differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.11820789
title: Additional file 6 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 6: Table S5. The sequences of primers of genes in qRT-PCR.
DOI: 10.6084/m9.figshare.11820789.v1
title: Additional file 6 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 6: Table S5. The sequences of primers of genes in qRT-PCR.
DOI: 10.6084/m9.figshare.11820780
title: Additional file 4 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 4: Table S3. The list of 74 common differentially expressed genes related to “response to stimulus” in Fig. 4c.
DOI: 10.6084/m9.figshare.11820786.v1
title: Additional file 5 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 5: Table S4. The list of the differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.11820780.v1
title: Additional file 4 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 4: Table S3. The list of 74 common differentially expressed genes related to “response to stimulus” in Fig. 4c.
DOI: 10.6084/m9.figshare.11820777
title: Additional file 3 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 3: Table S2. The expression profiles of the 84 common differentially expressed genes associated with “transporter activity” in Fig. 4b.
DOI: 10.5517/ccdc.csd.cc25476s
title: CCDC 2000064: Experimental Crystal Structure Determination

description: Related Article: Varun Kumar, Mohamed El-Massaoudi, Smaail Radi, Kristof Van Hecke, Aurelian Rotaru, Yann Garcia|2020|New J.Chem.|44|13902|doi:10.1039/D0NJ02823A
DOI: 10.5517/ccdc.csd.cc25m151
title: CCDC 2014292: Experimental Crystal Structure Determination

description: Related Article: Xiao-Qin Wei, Dong Shao, Cai-Long Xue, Xing-Yu Qu, Jie Chai, Jian-Qing Li, Yi-En Du, Yong-Qiang Chen|2020|CrystEngComm|22|5275|doi:10.1039/D0CE00979B
DOI: 10.6084/m9.figshare.11820777.v1
title: Additional file 3 of Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

description: Additional file 3: Table S2. The expression profiles of the 84 common differentially expressed genes associated with “transporter activity” in Fig. 4b.
DOI: 10.5517/ccdc.csd.cc25m162
title: CCDC 2014293: Experimental Crystal Structure Determination

description: Related Article: Xiao-Qin Wei, Dong Shao, Cai-Long Xue, Xing-Yu Qu, Jie Chai, Jian-Qing Li, Yi-En Du, Yong-Qiang Chen|2020|CrystEngComm|22|5275|doi:10.1039/D0CE00979B
DOI: 10.6084/m9.figshare.11820750
title: Additional file 4 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 4: Table S3. This table contains drug screens data that does not pass the FDR
DOI: 10.6084/m9.figshare.11820753
title: Additional file 5 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 5: Table S4. This table contains a list of gene hits and scores after MAGeCK analysis.
DOI: 10.6084/m9.figshare.11820750.v1
title: Additional file 4 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 4: Table S3. This table contains drug screens data that does not pass the FDR
DOI: 10.6084/m9.figshare.11820753.v1
title: Additional file 5 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 5: Table S4. This table contains a list of gene hits and scores after MAGeCK analysis.
DOI: 10.6084/m9.figshare.11820741
title: Additional file 3 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 3: Table S2. This table contains sgRNA level data after MAGeCK analysis.
DOI: 10.5517/ccdc.csd.cc24wtb6
title: CCDC 1992938: Experimental Crystal Structure Determination

description: Related Article: Shu-Kui Shi, Xin Li, Hui-li Guo, Yan-hua Fan, Hai-yan Li, Dong-Bin Dang, Yan Bai|2020|Inorg.Chem.|59|11213|doi:10.1021/acs.inorgchem.0c00825
DOI: 10.5517/ccdc.csd.cc24wtc7
title: CCDC 1992939: Experimental Crystal Structure Determination

description: Related Article: Shu-Kui Shi, Xin Li, Hui-li Guo, Yan-hua Fan, Hai-yan Li, Dong-Bin Dang, Yan Bai|2020|Inorg.Chem.|59|11213|doi:10.1021/acs.inorgchem.0c00825
DOI: 10.6084/m9.figshare.11820741.v1
title: Additional file 3 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 3: Table S2. This table contains sgRNA level data after MAGeCK analysis.
DOI: 10.6084/m9.figshare.11820726
title: Additional file 3 of Charting the landscape of graphical displays for meta-analysis and systematic reviews: a comprehensive review, taxonomy, and feature analysis

description: Additional file 3. Feature assessments for the entire collection of 208 graphical displays for meta-analysis and systematic reviews.
DOI: 10.6084/m9.figshare.11820723
title: Additional file 1 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 1: Table S1. This table contains the drug information used for screens. Table S5. This table contains enriched KEGG pathways for essential genes. Table S6. This table contains enriched KEGG pathways from screens. Table S7. This table contains a list of gene hits and scores for MDR genes. Table S8. This table contains the oncomine data for Additional file: Fig. S9b. Table S9. This file contains sgRNA sequences used for gene validation.
DOI: 10.6084/m9.figshare.11820726.v1
title: Additional file 3 of Charting the landscape of graphical displays for meta-analysis and systematic reviews: a comprehensive review, taxonomy, and feature analysis

description: Additional file 3. Feature assessments for the entire collection of 208 graphical displays for meta-analysis and systematic reviews.
DOI: 10.6084/m9.figshare.11820723.v1
title: Additional file 1 of Systematic functional identification of cancer multi-drug resistance genes

description: Additional file 1: Table S1. This table contains the drug information used for screens. Table S5. This table contains enriched KEGG pathways for essential genes. Table S6. This table contains enriched KEGG pathways from screens. Table S7. This table contains a list of gene hits and scores for MDR genes. Table S8. This table contains the oncomine data for Additional file: Fig. S9b. Table S9. This file contains sgRNA sequences used for gene validation.
DOI: 10.6084/m9.figshare.11820708
title: Additional file 1 of Outcome of transforaminal epidural steroid injection for lumbar radiculopathy: initial three-year experience at Upendra Devkota Memorial-National Institute of Neurological and Allied Sciences, Nepal

description: Additional file 1. Master Table.
DOI: 10.6084/m9.figshare.11820708.v1
title: Additional file 1 of Outcome of transforaminal epidural steroid injection for lumbar radiculopathy: initial three-year experience at Upendra Devkota Memorial-National Institute of Neurological and Allied Sciences, Nepal

description: Additional file 1. Master Table.
DOI: 10.6084/m9.figshare.11820696
title: Additional file 9 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 9. List of prophages per genome and insertion sites, size, number of CDS and annotation.
DOI: 10.6084/m9.figshare.11820696.v1
title: Additional file 9 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 9. List of prophages per genome and insertion sites, size, number of CDS and annotation.
DOI: 10.6084/m9.figshare.11820684
title: Additional file 7 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 7. List of plasmids, prophages and transposons.
DOI: 10.6084/m9.figshare.11820684.v1
title: Additional file 7 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 7. List of plasmids, prophages and transposons.
DOI: 10.6084/m9.figshare.11820651
title: Additional file 3 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 3. Overview of the genomes, CC, and quality parameters of de novo assembly and read mapping.
DOI: 10.6084/m9.figshare.11820651.v1
title: Additional file 3 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 3. Overview of the genomes, CC, and quality parameters of de novo assembly and read mapping.
DOI: 10.6084/m9.figshare.11820639
title: Additional file 1 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 1. List of 94â€‰L. monocytogenes isolates included in the present study, associated metadata and sequence accessions.
DOI: 10.6084/m9.figshare.11820633
title: Additional file 11 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 11. List of genes enriched in the originating plant.
DOI: 10.6084/m9.figshare.11820639.v1
title: Additional file 1 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 1. List of 94â€‰L. monocytogenes isolates included in the present study, associated metadata and sequence accessions.
DOI: 10.6084/m9.figshare.11820633.v1
title: Additional file 11 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 11. List of genes enriched in the originating plant.
DOI: 10.6084/m9.figshare.11820621
title: Additional file 10 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 10. Pairwise comparison matrix of prophage sequences.
DOI: 10.6084/m9.figshare.11820621.v1
title: Additional file 10 of Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

description: Additional file 10. Pairwise comparison matrix of prophage sequences.
DOI: 10.6084/m9.figshare.11820594
title: Additional file 1 of The C++â€‰programming language in cheminformatics and computational chemistry

description: Additional file 1. A simple implementation of type Molecule in C++11 to illustrate the concepts of object-oriented and generic programming.
DOI: 10.6084/m9.figshare.11820594.v1
title: Additional file 1 of The C++â€‰programming language in cheminformatics and computational chemistry

description: Additional file 1. A simple implementation of type Molecule in C++11 to illustrate the concepts of object-oriented and generic programming.
DOI: 10.6084/m9.figshare.11820552
title: Additional file 2 of Vitamin C may reduce the duration of mechanical ventilation in critically ill patients: a meta-regression analysis

description: Additional file 2. The data set used in this analysis.
DOI: 10.6084/m9.figshare.11820552.v1
title: Additional file 2 of Vitamin C may reduce the duration of mechanical ventilation in critically ill patients: a meta-regression analysis

description: Additional file 2. The data set used in this analysis.
DOI: 10.6084/m9.figshare.11820540
title: Additional file 1 of Outcomes following resuscitative thoracotomy for abdominal exsanguination, a systematic review

description: Additional file 1: Appendixâ€™s: Outcomes following resuscitative thoracotomy for abdominal exsanguination, a systematic review
DOI: 10.6084/m9.figshare.11820540.v1
title: Additional file 1 of Outcomes following resuscitative thoracotomy for abdominal exsanguination, a systematic review

description: Additional file 1: Appendixâ€™s: Outcomes following resuscitative thoracotomy for abdominal exsanguination, a systematic review