cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.12490070.v2
title: The Neuroanatomical Ultrastructure and Function of a Biological Ring Attractor - Behavioral data from perturbation experiments

description: This dataset features the behavioral data from the E-PG, AOTU, and control Shibire<sup>ts</sup> experiments. The directories are arranged first by cell type, then by the date of the experiment for that cell type. Each trial has two text files, one that features that raw data of fly position and one that features the synchronization data between the imaging frames and the visual display (noted with "_SYNC").<br>Analysis code can be found at https://github.com/DanTurner-Evans/BiologicalRingAttractor-Code<br>Related materials in the collection (https://doi.org/10.25378/janelia.c.5179721):Neuron skeletons and synapses: https://doi.org/10.25378/janelia.12497756<br>One color calcium imaging data: https://doi.org/10.25378/janelia.12490373<br>Kir perturbation calcium imaging data: https://doi.org/10.25378/janelia.12490325Shi perturbation calcium imaging data: https://doi.org/10.25378/janelia.12490313Two color calcium imaging data: https://doi.org/10.25378/janelia.12490274<br>Dataset supports the publication:Turner-Evans, D. B., Jensen, K. T., Ali, S., Paterson, T., Sheridan, A., Ray, R. P., Wolff, T., Lauritzen, J. S., Rubin, G. M., Bock, D. D., & Jayaraman, V. (2020). The Neuroanatomical Ultrastructure and Function of a Biological Ring Attractor. Neuron, 108(1), 145-163.e10. https://doi.org/10.1016/j.neuron.2020.08.006<br>Abstract<br>Neural representations of head direction (HD) have been discovered in many species. Theoretical work has proposed that the dynamics associated with these representations are generated, maintained, and updated by recurrent network structures called ring attractors. We evaluated this theorized structure-function relationship by performing electron-microscopy-based circuit reconstruction and RNA profiling of identified cell types in the HD system of Drosophila melanogaster. We identified motifs that have been hypothesized to maintain the HD representation in darkness, update it when the animal turns, and tether it to visual cues. Functional studies provided support for the proposed roles of individual excitatory or inhibitory circuit elements in shaping activity. We also discovered recurrent connections between neuronal arbors with mixed pre- and postsynaptic specializations. Our results confirm that the Drosophila HD network contains the core components of a ring attractor while also revealing unpredicted structural features that might enhance the network’s computational power.
DOI: 10.6084/m9.figshare.21384780.v1
title: Data: Audiencias amplias y visibilidad web. Posicionamiento web de revistas académicas de comunicación

description: Los datos recogidos muestran la visibilidad web de las 50 principales revistas académicas iberoamericanas sobre comunicación social con el objetivo de identificar el grado de difusión de sus contenidos a audiencias amplias. Los datos se han obtenido con la herramienta Sistrix Toolbar. Recogida de datos semana del 17 de enero al 24 de enero 2022.
DOI: 10.6084/m9.figshare.23171414.v1
title: Spatial location data

description: Spatial coordinates for each location
DOI: 10.6084/m9.figshare.25999720.v1
title: Supplementary Table 4

description: <b>Supplementary Table 4 – Gene ontology pathways for each tuft subcluster.</b> Ontologies/pathways were filtered to GO datasets and pathways with a two-sided hypergeometric test with Bonferroni step-down <i>p</i>-value correction &gt; 0.05 were removed.
DOI: 10.6084/m9.figshare.4789414.v1
title: Data from Mayer et.al 2017 TAG

description: This data package accompanies the following publication:<br><br>Mayer et al. 2017 (Theoretical and Applied Genetics)<br>Is there an optimum level of diversity in utilization of genetic resources?doi:10.1007/s00122-017-2959-4<br><br>It contains a copy of the data files used in this paper as well as further accompanying files (see README.txt).<br>
DOI: 10.6084/m9.figshare.9118592.v1
title: pat 8 MRI

description: Admire, Pinnacle, and Velocity denote structure sets after a deformable or rigid registration was applied to the MRI holding the CT as primary.
DOI: 10.17632/hxw83wz44y
title: Data for: Associations between ethnicity, social contact, and pneumococcal carriage three years post-PCV10 in Fiji

description: Empirical pneumococcal nasopharyngeal carriage data and social contact data from a cross-sectional study Fiji, three years post-PCV10 (2015)
DOI: 10.6084/m9.figshare.23584827.v5
title: <b>Highly divergent and diverse viral community infecting sylvatic mosquitoes from Northeast Brazil</b>

description: Mosquitoes can transmit several pathogenic viruses to humans, but their natural viral community is also composed of many insect-specific viruses (ISV) that modulate arthropod-borne virus (arbovirus) transmission and mosquito fitness. Besides a growing number of studies investigating the mosquito virome the majority are focused on few urban species and relatively little is known about the virome of sylvatic mosquitoes. Here, we characterized the RNA virome of 10 sylvatic mosquitos species from Atlantic forest remains at a sylvatic-urban interface in Northeast Brazil employing a metatranscriptomic approach. We detected a total of 21 viral families. The phylogenetic reconstructions of 13 viral families revealed that the majority of the sequences are putative ISVs. The phylogenetic positioning and, in most cases, the association with a high RdRp amino acid divergence from other known viruses suggests that the viruses characterized here represent 60 new viral species. Therefore, the sylvatic mosquitoes viral community revealed a predominance of highly divergent viruses highlighting the limited knowledge we still have about the natural virome that infect these blood feeding insects. Moreover, we found a strong species-virome association as none of the viruses recovered were shared between the species investigated. These background findings will help to understand the interactions and coevolution between mosquito and viruses in nature.
DOI: 10.6084/m9.figshare.3829995.v2
title: scikit-learn kddcup99 dataset kddcup.data_10_percent.gz

description: Part of the kddcup99 dataset used in scikit-learn.
DOI: 10.6084/m9.figshare.7964615.v2
title: Hydrothermal temperatures in Germany

description: File contains achievable hydrothermal temperatures in Germany in 8.5 km² resolution
DOI: 10.6084/m9.figshare.21971951.v1
title: Radiology and Radiation Oncology Considerations for Transgender and Intersex Patients

description: This data set includes 16 de-identified transcripts analyzed in the following published article in the Journal of Medical Imaging and Radiation Oncology (2023): <strong>Radiology and Radiation Oncology Considerations for Transgender and Intersex Patients: A Qualitative Study</strong> <br> Mandi L. Pratt-Chapman,1,2 Joseph Astorino,1 Sharad Goyal,1 Berndt Schmit,1 Mei Ling Yap,3,4,5 Shiv Bajaj,1 Emily Angiulo2 1 The George Washington University, School of Medicine and Health Sciences, GW Cancer Center, 800 23rd Street, NW, Washington, DC 20052 2 The George Washington University, Milken Institute School of Public Health, 900 New Hampshire Avenue, NW, Washington, DC 20036 3 Collaboration for Cancer Outcomes, Research and Evaluation (CCORE), UNSW Sydney, Liverpool, NSW, Australia 4 The George Institute for Global Health, UNSW Sydney, Newtown, NSW, Australia 5 Liverpool and Macarthur Cancer Therapy Centres, Western Sydney University, Campbelltown, NSW, Australia 6 School of Public Health, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, Australia <br> <strong>Corresponding author</strong>: Mandi L. Pratt-Chapman, PhD, GW Cancer Center, 800 23rd Street, NW, Washington, DC 20052, email: mandi@gwu.edu, phone: 202-994-5502, ORCID: 0000-0002-9303-7659
DOI: 10.6084/m9.figshare.23504007.v1
title: HMAP Dataset 13: Galapagos Marine Reserve, Ecuador I

description: Although commercial fishing activity commenced in Galapagos during the 1920s, it was not until 1997 that the systematic collection of fishing and biological data was initiated by the newly-founded Participatory Programme of Fisheries Monitoring and Research (PIMMP). Since then, the PIMPP has collected on a daily basis site-specific catches and effort data for the main fisheries of the GMR. Consequently, a large and complex amount of fishing related data has been generated. All this data was reviewed, standardized and edited by researchers of the CDF between March 2005 and December 2007. In addition, a range of primary source material was used to assemble pre-1997 data on the sea cucumber, spiny lobster and finfish fisheries.
DOI: 10.6084/m9.figshare.28804958.v1
title: <b>Simplified approaches to estimate rainfall erosivity from coarse temporal resolution precipitation data in the Mediterranean region</b>

description: The assessment of rainfall erosivity is frequently hindered by the limited availability of high-resolution rainfall data. A large dataset, comprising 10-minute rainfall data collected over the last two decades from 335 rain gauges across three regions of southern Italy, was utilized in this study to estimate benchmark values of mean annual rainfall erosivity according to the Revised Universal Soil Loss Equation. Ten existing simplified models based on coarser resolution rainfall data (from daily to annual) were compared to two newly developed empirical models based on daily-resolution data. The first proposed model uses two compound meteorological predictors, namely the rainfall episodicity and intensity indices, derived from the mean annual rainfall, the Gini’s coefficient, and the mean annual number of rainy days. The second model integrates the previous one with geographic and topographic covariates, including latitude, elevation, and minimum distance to the coastline. The performances of all models were evaluated and compared using various metrics, including the Root Mean Square Error (RMSE), the mean error, the adjusted coefficient of determination, the Kling-Gupta efficiency, and the Akaike information criterion. All the performance indices showed how the newly developed models outperformed the ten existing recalibrated equations, obtaining a reduction in absolute percentage error from 27 to 18%. Our extensive dataset allowed for robust calibration and validation of existing and new simplified models, paving the way for an ensemble modeling approach that enhances model transferability in data-scarce environments under similar precipitation regimes.
DOI: 10.6084/m9.figshare.3558651.v1
title: Appendix A. Temporal and spatial variation in air temperature within the study region.

description: Temporal and spatial variation in air temperature within the study region.
DOI: 10.17632/nhfzkkpcsw
title: Data for: Energy prices, costs of energy and rational bubbles in the renewable energy sector

description: The dataset comprises the following series:

01_RI_data_series: Return index series for the 27 companies included in the NASDAQ OMX Renewable Energy Gen (GRNREG) index (source: Datastream).
02_DY_data_series: Dividend yield series for the 27 companies included in the NASDAQ OMX Renewable Energy Gen (GRNREG) index (source: Datastream).
03_MV_data_series: Market value series for the 27 companies included in the NASDAQ OMX Renewable Energy Gen (GRNREG) index (source: Datastream).
04_Exchange_rates: Exchange rates (source: OECD).
05_LCOE: Average Levelized cost of energy for the United States and Europe (source: IRENA (2022)).
06_PriceLCOE_ratio: Energy prices relative to the levelized cost of energy, where energy prices are pool prices compiled from the Nord Pool power market.
07_Risk_free_and_ERP: (i) 10-year German bond yield and 20-year U.S. bond yield, and (ii) equity risk premium for Europe and U.S. (source: Bloomberg).
08_Unlevered_Betas: Unlevered betas for 23 European firms and 11 North-American firms whose activity is focused on the renewable energy sector (source: S&P Capital IQ).

REFERENCES:
IRENA, 2022. Renewable Energy Statistics 2022, available at: https://www.irena.org/-/media/Files/IRENA/Agency/Publication/2022/Jul/IRENA_Renewable_energy_statistics_2022.pdf (accessed 12 May 2024).
DOI: 10.6084/m9.figshare.28034828.v1
title: Data from: Beneath the buzz: Quantifying nest locations and densities of ground-nesting wild bees (Hymenoptera: Anthophila)

description: Data for the publication Hellerich et al. (2025) in <i>Methods in Ecology and Evolution</i>: Beneath the buzz: Quantifying nest locations and densities of ground-nesting wild bees (Hymenoptera: Anthophila). The dataset contains all bee specimens collected during the 2023 field survey using emergence traps. Data fields include information about collected species, time and site of collection, levels of wear and phenological remarks used to classify nesting activity and nests estimated this way.Nesting activity was classified based on the categories suggested by Portman et al. (2022) for the level of wear of wings and mandibles: 1 = Unworn (no nicks on the wings / no scratches on the mandibles and their shiny surface reaching the very tip); 2 = Slightly worn (one or two small nicks on the wings / shiny surface of the mandibles worn at the very tip, combined with small scratches); 3= Moderatly or extremly worn (multiple nicks or tears on the wings / noticeably worn down mandibles).
DOI: 10.6084/m9.figshare.c.3598085_d7.v1
title: MOESM8 of Skeletal light-scattering accelerates bleaching response in reef-building corals

description: Additional file 8: Table S1b. Nucleotide sequencing. GenBank accession numbers of genes sequenced in this study.
DOI: 10.17632/25g6hhw5db
title: O-GlcNAcylation drives calcium signaling towards osteoblast differentiation: a bioinformatics-oriented study

description: Objective: This study aimed to reveal the possible mechanisms by which O-linked-N-acetylglucosaminylation (O-GlcNAcylation) regulates osteoblast differentiation using a series of bioinformatics-oriented experiments. Methods: To examine the influence of O-GlcNAcylation levels on osteoblast differentiation, osteoblastic MC3T3-E1 cells were treated with O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA) inhibitors. Correlations between the levels of O-GlcNAcylation and the expression of osteogenic markers as well as OGT were evaluated by qPCR and western blotting. The O-GlcNAcylated proteins assumed to correlate with Runx2 expression were retrieved from several public databases and used for further bioinformatics analysis. Following the findings of the bioinformatics analysis, intracellular calcium ([Ca2+]i) was monitored in the cells treated with OGT and OGA inhibitors using a confocal laser-scanning microscope (CLS). The interaction effect between O-GlcNAcylation and [Ca2+]i on osteogenic marker expression was determined using stable OGT knockdown MC3T3-E1 cells. Results: O-GlcNAcylation was positively and negatively associated with osteoblast differentiation. The time-course profile of global O-GlcNAcylated proteins showed a distinctive pattern with different molecular weights during osteoblast differentiation. The expression pattern of several O-GlcNAcylated proteins was significantly similar to that of Runx2 expression. Bioinformatic analysis of the retrieved Runx2-related-O-GlcNAcylated-proteins revealed the importance of [Ca2+]i. CLS showed that alteration of O-GlcNAcylation rapidly changed [Ca2+]i in MC3T3-E1 cells. O-GlcNAcylation and [Ca2+]i showed an interaction effect on the expression of osteogenic markers. OGT knockdown disrupted the [Ca2+]i-induced expression changes of osteogenic markers. Conclusions: O-GlcNAcylation interacts with [Ca2+]i and elicits osteoblast differentiation by regulating the expression of osteogenic markers. KEYWORDS: Osteoblast differentiation; O-linked-N-acetylglucosaminylation; Calcium; Bioinformatics; Literature-mining
DOI: 10.17632/7mp25kyb4p
title: varRhoTurbVOF

description: The volume of fluid (VOF) method is a popular approach for multiphase flow modeling. The open-source computational fluid dynamics (CFD) software, OpenFOAM, has implemented a variety of VOF-based solvers and provides users a wide range of turbulence models. Since flows under the VOF framework belong to the variable-density incompressible flow category, the isothermal VOF-based solvers in OpenFOAM fail to use the correct turbulence models. varRhoTurbVOF is designed to solve this issue and with the hope to replace all the corresponding existing solvers in the future. With the object-oriented paradigm, varRhoTurbVOF guarantees the usability, reusability and maintainability of the codes. Aside from turbulence modeling, all other features in the original solvers are preserved in varRhoTurbVOF.
DOI: 10.17632/t9vx4ddm5n
title: Replication Files for Does Exporting Improve Matching? Evidence from French Employer-Employee Data

description: The STATA do-files listed below allow the replication of all the tables and figures reported in the manuscript “Does Exporting Improve Matching? Evidence from French Employer-Employee Data”. The data used to obtain tables and figures have been acceded at CEPII via CASD secure remote access and are confidential. We are not allowed to disseminate these datasets.
DOI: 10.6084/m9.figshare.17748092.v2
title: Crystal structure of active CDK4-cyclin D and mechanistic basis for abemaciclib efficacy

description: Despite the biological and therapeutic relevance of CDK4/6 for the treatment of HR+, HER2- advanced breast cancer, the detailed mode of action of CDK4/6 inhibitors is not completely understood. Of particular interest, phosphorylation of CDK4 at T172 (pT172) is critical for generating the active conformation, yet no such crystal structure has been reported to date. We describe here the x-ray structure of active CDK4-cyclin D3 bound to the CDK4/6 inhibitor abemaciclib and discuss the key aspects of the catalytically-competent complex. Furthermore, the effect of CDK4/6 inhibitors on CDK4 T172 phosphorylation has not been explored, despite its role as a potential biomarker of CDK4/6 inhibitor response. We show mechanistically that CDK4/6i stabilize primed (pT172) CDK4-cyclin D complex and selectively displace p21 in responsive tumor cells. Stabilization of active CDK4-cyclin D1 complex can lead to pathway reactivation following alternate dosing regimen. Consequently, sustained binding of abemaciclib to CDK4 leads to potent cell cycle inhibition in breast cancer cell lines and prevents rebound activation of downstream signaling. Overall, our study provides key insights demonstrating that prolonged treatment with CDK4/6 inhibitors and composition of the CDK4/6-cyclin D complex are both critical determinants of abemaciclib efficacy, with implications for this class of anticancer therapy.
DOI: 10.6084/m9.figshare.20254557.v1
title: Warmerdam et al 2021 Proposed Mobility Assessments

description: The Mobility Assessmen protocol contains all necessary information about the trials and performed protocol. All data is labeled and synchronised. The data oof each participant contains two folders, one with the IMU data and one with Optical Motion Capture data. The Matlab structure of the data is also defined in detail in the manuscript and https://github.com/neurogeriatricskiel/Validation-dataset
DOI: 10.17632/7c2zd56mzd
title: Health-related quality of life among thalassemia patients in Bangladesh using the SF‑36 questionnaire

description: This dataset presents comprehensive health-related quality of life (HRQoL) metrics collected from thalassemia patients in Bangladesh using the validated SF-36 (Short Form Health Survey) questionnaire. The study, published in Scientific Reports (DOI: 10.1038/s41598-023-34205-9), investigates the physical and mental health domains of affected individuals, offering valuable insights into their well-being.

The dataset includes demographic, clinical, and SF-36-derived health domain scores, encompassing variables such as age, gender, marital status, educational level, comorbidities, and blood transfusion status, alongside detailed domain scores for general health, physical functioning, mental health, and social functioning. The data also features aggregated physical and mental health summary scores and the total SF-36 score.

This dataset is particularly useful for researchers, clinicians, and public health professionals interested in assessing the quality of life in thalassemia patients, identifying at-risk groups, and evaluating the impact of medical interventions. It supports secondary analyses, cross-cultural comparisons, and methodological studies in HRQoL research.
DOI: 10.17632/9z48yfzr63
title: CRC Cell Classification

description: This repository contains the data for the whole slide analysis detailed in the paper "Computational pathology applied to clinical colorectal cancer cohorts identifies immune and endothelial cell spatial patterns predictive of outcome" by Trahearn, et al.

Included are cell classification tables, annotated regions for metastatic samples, and cell density heatmaps. Please refer to the README file included in each zip file for further details.
DOI: 10.17632/b68c372f9c
title: Waste management cost of Italian municipalities

description: Waste management cost, total waste generated, share of sorted waste and population of 4341 Italian municipalities. Reference year: 2019. type of waste: municipal solid waste
DOI: 10.6084/m9.figshare.23614791.v3
title: Supplementary Material for "Media and information literacy in the prescribed curriculum: A systematic review of its integration"

description: This dataset provides extended data supporting claims of a systematic review (PRISMA 2020 guidelines) about the process of integration of Media and Information Literacy (MIL) into the curriculum: a) research process; b) studies included; c) data.