cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12793250.v1
title: Multiple Myeloma cells (MM1S) cocultured with pancreatic cancer ctDNA

description: Whole genome sequencing data generated on multiple myeloma cells cocultured with circulating tumor DNA from a pancreatic cancer patient.<br>The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792893
title: Multiple Myeloma cells(MM1S) cocultured with multiple myeloma ctDNA

description: Whole genome sequencing data generated on multiple myeloma cells cocultured with circulating tumor DNA from a multiple myeloma patient.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12793193.v1
title: Pancreatic cancer ctDNA

description: Whole genome sequencing data generated on circulating tumor DNA from a patient with Pancreatic cancer.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792884
title: Multiple Myeloma Cell Line (MM1S)

description: Whole genome sequencing data generated on multiple myeloma cell line.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792890
title: Pancreatic cancer cells (MIA) cocultured with pancreatic cancer ctDNA

description: Whole genome sequencing data generated on pancreatic cells cocultured with circulating tumor DNA from a pancreatic cancer patient.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792935.v1
title: Multiple Myeloma ctDNA

description: Whole genome sequencing data generated on circulating tumor DNA from a multiple myeloma patient.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792896.v1
title: Pancreatic cancer cell line (MIA)

description: Whole genome sequencing data generated on pancreatic cancer cell line.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.12792878
title: Additional file 2 of Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis

description: Additional file 2: Figure S1. Microbiome associated with the invasive colonies of Tubastraea tagusensis. Interactive Figure [44].
DOI: 10.6084/m9.figshare.12792875
title: Additional file 1 of Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis

description: Additional file 1: Table S1. Table with identification taxonomic of the microbiome associated with colonies, including genus, family, order, class, phylum, domain and sequences for each sample.
DOI: 10.6084/m9.figshare.12792878.v1
title: Additional file 2 of Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis

description: Additional file 2: Figure S1. Microbiome associated with the invasive colonies of Tubastraea tagusensis. Interactive Figure [44].
DOI: 10.6084/m9.figshare.12792875.v1
title: Additional file 1 of Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis

description: Additional file 1: Table S1. Table with identification taxonomic of the microbiome associated with colonies, including genus, family, order, class, phylum, domain and sequences for each sample.
DOI: 10.6084/m9.figshare.12792819
title: Additional file 3 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 3: Table S2. Metadata for the 33 CTCF ChIPseq Narrow Peak datasets downloaded from ENCODE used in this study.
DOI: 10.6084/m9.figshare.12792822
title: Additional file 4 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 4: Table S3. Consensus boundary collection generated in this study.
DOI: 10.6084/m9.figshare.12792816
title: Additional file 2 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 2: Table S1. CTCF binding sites collection and associated annotations.
DOI: 10.6084/m9.figshare.12792819.v1
title: Additional file 3 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 3: Table S2. Metadata for the 33 CTCF ChIPseq Narrow Peak datasets downloaded from ENCODE used in this study.
DOI: 10.6084/m9.figshare.12792822.v1
title: Additional file 4 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 4: Table S3. Consensus boundary collection generated in this study.
DOI: 10.6084/m9.figshare.12792816.v1
title: Additional file 2 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

description: Additional file 2: Table S1. CTCF binding sites collection and associated annotations.
DOI: 10.6084/m9.figshare.12792804
title: Additional file 2 of Transcriptomic analyses reveal the expression and regulation of genes associated with resistance to early leaf spot in peanut

description: Additional file 2: Table S1. List of 133 differentially expressed genes identified between the R line and the S line.
DOI: 10.6084/m9.figshare.12792804.v1
title: Additional file 2 of Transcriptomic analyses reveal the expression and regulation of genes associated with resistance to early leaf spot in peanut

description: Additional file 2: Table S1. List of 133 differentially expressed genes identified between the R line and the S line.
DOI: 10.6084/m9.figshare.12792798
title: Additional file 9 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 9 Extraction of detailed information on the annotated genes in the goldfish sex determination regions [SDR (N = 373)] extracted from the NCBI goldfish female genome assembly annotation file (accession number QPKE00000000).
DOI: 10.6084/m9.figshare.12792792
title: Additional file 7 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 7. Contig names (contigID) from a goldfish Illumina male genome assembly with homologies with the putative Y-allele RAD-tags.
DOI: 10.6084/m9.figshare.12792795
title: Additional file 8 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 8. Annotation of potential Y chromosome contigs found in our male goldfish draft genome assembly by sequence comparisons using blastx searches for genes by BLAST.
DOI: 10.6084/m9.figshare.12792798.v1
title: Additional file 9 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 9 Extraction of detailed information on the annotated genes in the goldfish sex determination regions [SDR (N = 373)] extracted from the NCBI goldfish female genome assembly annotation file (accession number QPKE00000000).
DOI: 10.6084/m9.figshare.12792789
title: Additional file 6 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 6 Sequences of putative Y-allele RAD-tags (N = 32) found in some males but absent from all females.
DOI: 10.6084/m9.figshare.12792795.v1
title: Additional file 8 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 8. Annotation of potential Y chromosome contigs found in our male goldfish draft genome assembly by sequence comparisons using blastx searches for genes by BLAST.
DOI: 10.6084/m9.figshare.12792792.v1
title: Additional file 7 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 7. Contig names (contigID) from a goldfish Illumina male genome assembly with homologies with the putative Y-allele RAD-tags.
DOI: 10.6084/m9.figshare.12792789.v1
title: Additional file 6 of Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

description: Additional file 6 Sequences of putative Y-allele RAD-tags (N = 32) found in some males but absent from all females.
DOI: 10.6084/m9.figshare.12792719
title: Additional file 14 of The role of vegetative cell fusions in the development and asexual reproduction of the wheat fungal pathogen Zymoseptoria tritici

description: Additional file 14: Table S1. List of primers used in this study for cloning, sequencing, and mutant confirmation.
DOI: 10.6084/m9.figshare.12792719.v1
title: Additional file 14 of The role of vegetative cell fusions in the development and asexual reproduction of the wheat fungal pathogen Zymoseptoria tritici

description: Additional file 14: Table S1. List of primers used in this study for cloning, sequencing, and mutant confirmation.
DOI: 10.6084/m9.figshare.12792596
title: Seasonal variation, degradation and bioavailability of dissolved organic matter in the Changjiang Estuary and its adjacent East China Sea

description: Description of sampling stations and variations in some parameters of the incubation experiments in the Changjiang Estuary and the adjacent East China Sea in July 2016 and February 2017<br>
DOI: 10.6084/m9.figshare.12792587
title: Raw data for "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology"`

description: This is the raw dataset for manuscript "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology".<br>V1-sim-ephys-imaging_raw: the raw data of simultaneously recorded calcium imaging (in three conditions: GP4.3 high zoom, 6s-TG in high zoom imaging, which limits the imaging region to a single cell; GP4.3 low zoom, 6s-TG in low zoom imaging condition, which mimics the conditions of the large field of view imaging; GP5.17, 6f-TG high zoom imaging) with attached extracellular electrophysiological recordings.<br>ALM-6f-TG_raw: the raw data of calcium imaging of the neural activity in 6f-TG mice anterior-lateral motor cortex, while the animal was performing a delayed-version pole location discrimination task. <br>
DOI: 10.6084/m9.figshare.12792557
title: 2019 02 02 VID00004 Original Frames

description: Relevant frames of VID00004 taken on 2 February 2019. Frames are extracted using Cisco FlipShare software distributed with the Cisco Flip UltraHD 720p digital video recorder used to record the video.<br>Project order 93a.
DOI: 10.6084/m9.figshare.12792626.v1
title: A high spatial resolution map of coastal wetlands over the Bohai rim

description: I developed a workflow for rapidly mapping coastal wetlands at a 10 m spatial resolution, using the recently developed Google Earth Engine cloud platform, machine learning algorithm, open-access Synthetic Aperture Radar and optical images from the Sentinel satellites, and topographic indexes. Based on the method, I derived a coastal wetland map of the Bohai rim (BRCW10). It had an overall accuracy of 82%. Here, I share the BRCW10 data and several auxiliary data including NDVI and NDW at a spatial resolution of 10 m.
DOI: 10.6084/m9.figshare.12792557.v1
title: 2019 02 02 VID00004 Original Frames

description: Relevant frames of VID00004 taken on 2 February 2019. Frames are extracted using Cisco FlipShare software distributed with the Cisco Flip UltraHD 720p digital video recorder used to record the video.<br>Project order 93a.
DOI: 10.6084/m9.figshare.12792596.v1
title: In situ and incubation data in the Changjiang Estuary and its adjacent East China Sea

description: Description of sampling stations and variations in some parameters of the incubation experiments in the Changjiang Estuary and the adjacent East China Sea in July 2016 and February 2017<br>
DOI: 10.6084/m9.figshare.12792596.v3
title: Seasonal variation, degradation and bioavailability of dissolved organic matter in the Changjiang Estuary and its adjacent East China Sea

description: Description of sampling stations and variations in some parameters of the incubation experiments in the Changjiang Estuary and the adjacent East China Sea in July 2016 and February 2017<br>
DOI: 10.6084/m9.figshare.12792596.v2
title: In situ and incubation data in the Changjiang Estuary and its adjacent East China Sea

description: Description of sampling stations and variations in some parameters of the incubation experiments in the Changjiang Estuary and the adjacent East China Sea in July 2016 and February 2017<br>
DOI: 10.6084/m9.figshare.12792524
title: Gene database of Streptococcus mutans NCTC 10449

description: <i>Streptococcus mutans</i> is a facultative anaerobic, Gram-positive cocci that inhabit the oral cavity. Known to cause oral disease, the bacterium has received much attention in clinical and basic research. This work sought to provide basic information of the genetic repertoire of <i>S. mutans</i> NCTC 10449 by parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function, and gene sequence of all genes in the genome of <i>S. mutans</i>, the resource should find use in studies seeking to understand pathogenesis mechanisms of this human oral inhabitant.
DOI: 10.6084/m9.figshare.12792506
title: Fig 3c. The L,D transpeptidase ldt2 is required for covalent attachment of BpbA and BbpB to PG.

description: Stationary phase C. burnetii samples were frozen on a glow discharged Quantifoil™ R 2/2 grid using a Leica EM GP plunge freezer (Leica Microsystems, Wetzlar, Germany) set to a relative humidity of 100%. Grids were mounted in an autogrid assembly and cryo 2D images collected using a FEI Titan Krios 300kV FEG-TEM and a FEI Falcon II CMOS direct electron detection camera. Low dose images of 13e/A2 were captured at 6 µm defocus with a nominal magnification of 29 K which corresponds to a pixel size of 2.87 Å using a 70 µm objective aperture. OM vesiculation was quantified by imaging 50 bacterial cells per strain and is expressed as the percentage of bacteria with vesicles clearly attached to the bacterial OM.
DOI: 10.6084/m9.figshare.12792506.v1
title: Fig 3c. The L,D transpeptidase ldt2 is required for covalent attachment of BpbA and BbpB to PG.

description: Stationary phase C. burnetii samples were frozen on a glow discharged Quantifoil™ R 2/2 grid using a Leica EM GP plunge freezer (Leica Microsystems, Wetzlar, Germany) set to a relative humidity of 100%. Grids were mounted in an autogrid assembly and cryo 2D images collected using a FEI Titan Krios 300kV FEG-TEM and a FEI Falcon II CMOS direct electron detection camera. Low dose images of 13e/A2 were captured at 6 µm defocus with a nominal magnification of 29 K which corresponds to a pixel size of 2.87 Å using a 70 µm objective aperture. OM vesiculation was quantified by imaging 50 bacterial cells per strain and is expressed as the percentage of bacteria with vesicles clearly attached to the bacterial OM.
DOI: 10.6084/m9.figshare.12792491
title: RNA-seq raw data of B16F10 cells.

description: RNA-seq of B16F10 cells. S303, S304, S305 are SH-1, SH-2, SH-3. S306, S307, S308 are CK-1, CK-2, CK-3
DOI: 10.6084/m9.figshare.12792482
title: BIOL3250_survey_datasheet

description: A sample datasheet for surveying plant communities. <br><b>Attributes</b>rep is the replicate quadrat or plot.<br>date is calendar data in d/m/y. <br>researcher is the initials of observer. <br><br>location is the general name of space such as name of the park or neighbhourhood that backyard is in and the city. <br>species_richness is the total number of unique plant species within the plot. <br>total_cover is the estimated cover of all vegetation within the plot.
DOI: 10.6084/m9.figshare.12792482.v1
title: BIOL3250_survey_datasheet

description: A sample datasheet for surveying plant communities. <br><b>Attributes</b>rep is the replicate quadrat or plot.<br>date is calendar data in d/m/y. <br>researcher is the initials of observer. <br><br>location is the general name of space such as name of the park or neighbhourhood that backyard is in and the city. <br>species_richness is the total number of unique plant species within the plot. <br>total_cover is the estimated cover of all vegetation within the plot.
DOI: 10.6084/m9.figshare.12792455
title: BIOL3250_bioblitz_datasheet

description: A sample datasheet for supporting a bioblitz that uses iNaturalist. <br><b>Attributes</b>rep is the replicate or unique animal observed.<br>date is calendar data in d/m/y. <br>time is time of day in 24hour clock format. <br>researcher is the initials of observer. <br>location is the general name of space such as name of the park or neighbhourhood that backyard is in and the city. <br>habitat is an ecological description of where the animal was observed within the sampling area such as on the ground, in a tree, on a bush, flying through etc.<br>taxa is simply vertebrate or invertebrate.<br>species is the common name of the animal.<br><br>
DOI: 10.6084/m9.figshare.12792374
title: OCTScans_metadata

description: metadata relative to the raw OCT scans, relating the acquisition date of the OCT scans with the relative days of biofilm development and the replicate<br>
DOI: 10.6084/m9.figshare.12792356
title: OCT Raw scans - profiling

description: OCT scans at two lateral resolutions (40 um, 40 um, 2.18 um x,y,z respectively) and (11.1 um ,11.1 um and 2.18 um) were taken every 3 days in a 15 days experiment. LR scans have dimension 250 x 250 x 1024 pixels and are contained in folders name large. HR scans are 900 x 900 x 1024 pixels and are contained in folders names B1 (for the FFM) and B5 (for the SFM). Both HR and LR scans covered a total volume of 10 mm x 10 mm x 2.2 mm. 66 x 3 low resolution (LR) scans covered an area of 0.4 m x 0.025 m in a tiled pattern. 3 x 3 high resolution (HR) scans were taken at the extremes of the same area of interest. Each scan (in .raw format) is contained within a folder that contains also its metadata. They are labeled with the date and time of acquisition, while the last part of both the folder and file name identifies the tile.
DOI: 10.6084/m9.figshare.12792344
title: Post-coma_Brain Injury_2020

description: Dstabase of an assistive technology-based intervention to enable academic performance and communication skills in five adolescents emerged from a minimally conscious state,
DOI: 10.6084/m9.figshare.12792356.v1
title: OCT Raw scans - profiling

description: OCT scans at two lateral resolutions (40 um, 40 um, 2.18 um x,y,z respectively) and (11.1 um ,11.1 um and 2.18 um) were taken every 3 days in a 15 days experiment. LR scans have dimension 250 x 250 x 1024 pixels and are contained in folders name large. HR scans are 900 x 900 x 1024 pixels and are contained in folders names B1 (for the FFM) and B5 (for the SFM). Both HR and LR scans covered a total volume of 10 mm x 10 mm x 2.2 mm. 66 x 3 low resolution (LR) scans covered an area of 0.4 m x 0.025 m in a tiled pattern. 3 x 3 high resolution (HR) scans were taken at the extremes of the same area of interest. Each scan (in .raw format) is contained within a folder that contains also its metadata. They are labeled with the date and time of acquisition, while the last part of both the folder and file name identifies the tile.
DOI: 10.6084/m9.figshare.12792344.v1
title: Post-coma_Brain Injury_2020

description: Dstabase of an assistive technology-based intervention to enable academic performance and communication skills in five adolescents emerged from a minimally conscious state,
DOI: 10.6084/m9.figshare.12792131
title: ENDS Use Hispanic College Students

description: This data set is from a cross sectional assessment of Hispanic college student vaping and associated correlates.
DOI: 10.6084/m9.figshare.12792155
title: CDCom 2016-2017 patient dataset

description: Kisoro District Hospital VHW program Chronic Disease in the Community dataset for 2016-2017
DOI: 10.6084/m9.figshare.12792356.v2
title: OCT Raw scans - profiling

description: OCT scans at two lateral resolutions (40 um, 40 um, 2.18 um x,y,z respectively) and (11.1 um ,11.1 um and 2.18 um) were taken every 3 days in a 15 days experiment. LR scans have dimension 250 x 250 x 1024 pixels and are contained in folders name large. HR scans are 900 x 900 x 1024 pixels and are contained in folders names B1 (for the FFM) and B5 (for the SFM). Both HR and LR scans covered a total volume of 10 mm x 10 mm x 2.2 mm. 66 x 3 low resolution (LR) scans covered an area of 0.4 m x 0.025 m in a tiled pattern. 3 x 3 high resolution (HR) scans were taken at the extremes of the same area of interest. Each scan (in .raw format) is contained within a folder that contains also its metadata. They are labeled with the date and time of acquisition, while the last part of both the folder and file name identifies the tile.
DOI: 10.6084/m9.figshare.12792092
title: profiles dark SFM

description: p { margin-bottom: 0.1in; line-height: 120% } oxygen concentration profiles were measured with a clark-type oxygen microsensor (tip diameter : 10 um, Unisense). Several profiles were taken in precise x,y positions of the biofilm, especially in the center of biofilm structures. Each x,y (labeled with an <i>id</i>) position was sampled in both light and dark, hence light park profiles are coupled by their position, which is reported in the metadata files. Light and dark profiles are coupled in the file "Tables/Ph-Res_profiles_data_all_coords.csv". The raw OCT scans are in "OCT raw scans/ profiles/", and relative DEMs are in "DEMs/profiling_*"
DOI: 10.6084/m9.figshare.12792110
title: CDCom Data Set Kisoro District Hospital VHW program 2019

description: 2019 Kisoro District Hospital VHW program hypertension patients blood pressure and medications including cost for October through December.
DOI: 10.6084/m9.figshare.12792155.v1
title: CDCom 2016-2017 patient dataset

description: Kisoro District Hospital VHW program Chronic Disease in the Community dataset for 2016-2017
DOI: 10.6084/m9.figshare.12792059
title: Wind120

description: https://podaac-tools.jpl.nasa.gov/drive/files/allData/cygnss/L2/cdr_v1.0/2018/120
DOI: 10.6084/m9.figshare.12792056
title: profiles light FFM

description: p { margin-bottom: 0.1in; line-height: 120% } oxygen concentration profiles were measured with a clark-type oxygen microsensor (tip diameter : 10 um, Unisense). Several profiles were taken in precise x,y positions of the biofilm, especially in the center of biofilm structures. Each x,y (labeled with an <i>id</i>) position was sampled in both light and dark, hence light park profiles are coupled by their position, which is reported in the metadata files. Light and dark profiles are coupled in the file "Tables/Ph-Res_profiles_data_all_coords.csv". The raw OCT scans are in "OCT raw scans/ profiles/", and relative DEMs are in "DEMs/profiling_*"
DOI: 10.6084/m9.figshare.12792110.v1
title: CDCom Data Set Kisoro District Hospital VHW program 2019

description: 2019 Kisoro District Hospital VHW program hypertension patients blood pressure and medications including cost for October through December.
DOI: 10.6084/m9.figshare.12792050
title: profiles dark FFM

description: p { margin-bottom: 0.1in; line-height: 120% } oxygen concentration profiles were measured with a clark-type oxygen microsensor (tip diameter : 10 um, Unisense). Several profiles were taken in precise x,y positions of the biofilm, especially in the center of biofilm structures. Each x,y (labeled with an <i>id</i>) position was sampled in both light and dark, hence light park profiles are coupled by their position, which is reported in the metadata files. Light and dark profiles are coupled in the file "Tables/Ph-Res_profiles_data_all_coords.csv". The raw OCT scans are in "OCT raw scans/ profiles/", and relative DEMs are in "DEMs/profiling_*"