cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2kp9yy
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((41.05013 15.72649,44.03031 11.57252,51.1683 13.94685,59.57191 19.45496,60.85147 23.2844,56.58628 26.51664,53.08883 26.21091,50.92069 28.09938,40.03247 32.69613,34.57792 29.12881,37.59399 21.7729,41.05013 15.72649))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aedes aegypti"
 ]
}

 The dataset includes 79 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004085-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyeg9g
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Mongolia, Kyrgyzstan, Nepal, Uzbekistan, Pakistan, Russian Federation)",
 "TaxonKey is Panthera uncia"
 ]
}

 The dataset includes 215 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004083-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14655927
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.31173793
title: <b>Supplementary material</b>

description: Maintaining dietary supply of limiting AA such as Lys, Met, and His during heat stress-induced reduction of DMI may help meet lactation requirements. Twelve lactating Holstein cows were allocated into 2 plots based on parity: 1) primiparous (n = 6; 29.5 ± 1.2 kg milk/d; 95.2 ± 16.2 DIM; mean ± SD), and 2) multiparous (n = 6; 40.3 ± 5.5 kg milk/d; 86.8 ± 10.2 DIM; 3.5 ± 1.6 parities). Within each parity, cows were allocated to 3 treatments, according to a replicated Latin square design with 14-d periods and 7-d washouts. Treatments were: (1) heat stress (<b>HS</b>; 16.8% CP; maximal temperature–humidity index [<b>THI</b>] = 84), conventional diet estimated to supply (g/d) 107 Lys, 33 Met, 37 His, and 1,712 MP at expected DMI nadir (d 7-14), (2) HS with a diet balanced to supply, at expected DMI nadir, 179, 58, 44, and 1,740 g/d of Lys, Met, His, and MP, respectively (<b>HS+AA</b>; 16.9% CP; maximal THI = 84), or (3) pair feeding in thermoneutrality (<b>PF</b>; same diet as HS; maximal THI = 64; same diet as HS group). Peak rectal temperature (at 17h00), was 2.0°C greater in HS (39.8 °C) than in PF cows (37.9 °C) from d 1 to 14, whereas it was 0.72°C lower in HS+AA (39.2 °C) relative to HS from d 7 and 14. Respiratory rate was 2.7-fold greater over the 14-d period in HS relative to PF, but HS and HS+AA did not differ. DMI decreased progressively in all groups, reaching a nadir at 34% reduction. Milk and milk component yields decreased over time in all groups, but more pronouncedly in HS compared with PF, being 3.9 kg/d and 180, 186, and 205 g/d for milk, fat, protein, and lactose yields, respectively, from d 3 to 14. Milk and component yields did not differ between HS and HS+AA, although protein concentration increased in HS+AA on d 10 and 14. Heat stress increased pre- and postprandial insulin concentrations by 40% and 31%, respectively, relative to PF on d 7 and 14. Relative to HS, preprandial insulin concentrations were reduced in HS+AA by 18% on d 14, whereas postprandial insulin concentrations were reduced by 15% on d 7 and 14 in HS+AA. Plasma 3-methylhistidine concentrations increased in HS relative to PF by 24 and 41% on d 7 and 14, respectively, but were unaffected by HS+AA. Leu and glucose kinetics were determined via jugular vein infusion of labelled bicarbonate, Leu, and glucose on d13. MUN and Leu oxidation decreased in HS+AA, indicating reduced AA catabolism<i>.</i> Glucose rate of appearance (RA) was not affected by treatments, but the proportion of glucose RA used for lactose secretion tended to decrease in HS compared with PF. Relative to PF, plasma GH and IGF-1 were 28% and 13% higher in HS respectively, whereas HS+AA reduced both relative to HS by 27% and 11%, respectively. Increasing supply of Lys, Met, and His during HS reduced hyperthermia and AA catabolism, which reduced systemic inflammation, but did not improve lactation performance.
DOI: 10.6084/m9.figshare.31173793.v1
title: <b>Supplementary material</b>

description: Maintaining dietary supply of limiting AA such as Lys, Met, and His during heat stress-induced reduction of DMI may help meet lactation requirements. Twelve lactating Holstein cows were allocated into 2 plots based on parity: 1) primiparous (n = 6; 29.5 ± 1.2 kg milk/d; 95.2 ± 16.2 DIM; mean ± SD), and 2) multiparous (n = 6; 40.3 ± 5.5 kg milk/d; 86.8 ± 10.2 DIM; 3.5 ± 1.6 parities). Within each parity, cows were allocated to 3 treatments, according to a replicated Latin square design with 14-d periods and 7-d washouts. Treatments were: (1) heat stress (<b>HS</b>; 16.8% CP; maximal temperature–humidity index [<b>THI</b>] = 84), conventional diet estimated to supply (g/d) 107 Lys, 33 Met, 37 His, and 1,712 MP at expected DMI nadir (d 7-14), (2) HS with a diet balanced to supply, at expected DMI nadir, 179, 58, 44, and 1,740 g/d of Lys, Met, His, and MP, respectively (<b>HS+AA</b>; 16.9% CP; maximal THI = 84), or (3) pair feeding in thermoneutrality (<b>PF</b>; same diet as HS; maximal THI = 64; same diet as HS group). Peak rectal temperature (at 17h00), was 2.0°C greater in HS (39.8 °C) than in PF cows (37.9 °C) from d 1 to 14, whereas it was 0.72°C lower in HS+AA (39.2 °C) relative to HS from d 7 and 14. Respiratory rate was 2.7-fold greater over the 14-d period in HS relative to PF, but HS and HS+AA did not differ. DMI decreased progressively in all groups, reaching a nadir at 34% reduction. Milk and milk component yields decreased over time in all groups, but more pronouncedly in HS compared with PF, being 3.9 kg/d and 180, 186, and 205 g/d for milk, fat, protein, and lactose yields, respectively, from d 3 to 14. Milk and component yields did not differ between HS and HS+AA, although protein concentration increased in HS+AA on d 10 and 14. Heat stress increased pre- and postprandial insulin concentrations by 40% and 31%, respectively, relative to PF on d 7 and 14. Relative to HS, preprandial insulin concentrations were reduced in HS+AA by 18% on d 14, whereas postprandial insulin concentrations were reduced by 15% on d 7 and 14 in HS+AA. Plasma 3-methylhistidine concentrations increased in HS relative to PF by 24 and 41% on d 7 and 14, respectively, but were unaffected by HS+AA. Leu and glucose kinetics were determined via jugular vein infusion of labelled bicarbonate, Leu, and glucose on d13. MUN and Leu oxidation decreased in HS+AA, indicating reduced AA catabolism<i>.</i> Glucose rate of appearance (RA) was not affected by treatments, but the proportion of glucose RA used for lactose secretion tended to decrease in HS compared with PF. Relative to PF, plasma GH and IGF-1 were 28% and 13% higher in HS respectively, whereas HS+AA reduced both relative to HS by 27% and 11%, respectively. Increasing supply of Lys, Met, and His during HS reduced hyperthermia and AA catabolism, which reduced systemic inflammation, but did not improve lactation performance.
DOI: 10.5517/ccdc.csd.cc2qt41r
title: CCDC 2526594: Experimental Crystal Structure Determination

description: Related Article: Tatiana Gorelik|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.cc2fqz6ft
title: Data from: Phylogenomic data reveal three new families of poorly studied Solifugae (camel spiders)

description: The systematics of the arachnid order Solifugae have been an enigma, owing
 to challenges in interpreting morphology, a paucity of molecular
 phylogenetic studies sampling across the group, and a dearth of taxonomic
 attention for many lineages. Recent work has suggested that solifuge
 families largely exhibit contiguous distributions and reflect patterns of
 vicariance, with the exception of three families: Melanoblossidae,
 Daesiidae and Gylippidae. Morphological studies have cast doubt on their
 existing circumscriptions and the present composition of these taxa
 renders their distributions as disjunct. We leveraged ultraconserved
 elements (UCEs) to test the phylogenetic placement of three key lineages
 of Solifugae that cause these anomalous distributions: Dinorhax
 rostrumpsittaci (putative
 melanoblossid), Namibesia (putative daesiid),
 and Trichotoma (putative gylippid). Phylogenetic
 placement of these three genera based on UCEs rendered the families that
 harbor them as para- or polyphyletic, recovering instead relationships
 that better accord with a biogeographic history driven by vicariance.
 Toward a stable and phylogenetically informed classification of Solifugae,
 we establish three new families, Dinorhaxidae new rank,
 Namibesiidae new rank and Lipophagidae new
 rank.
description: # Phylogenomic data reveal three new families of poorly studied Solifugae
 (camel spiders)
 [https://doi.org/10.1016/j.ympev.2023.107989](https://doi.org/10.1016/j.ympev.2023.107989 "Persistent link using digital object identifier") ## Description of the data and file structure 1. Ultraconserved elements (UCE) alignment files for occupancies: 1% (Occ1_Alignment.phylip), 25% (Occ25_Alignment.phylip), 40% (Occ40_Alignment.phylip) and 50% (Occ50_Alignment.phylip) used for phylogenetic analyses performed using IQ-TREE v.2.1.2. Model selection was performed for each dataset using ModelFinderPlus using MFP + MERGE flag for each locus partition. Nodal support was estimated via 1,000 ultrafast bootstrap (UFBoot) resampling replicates and the Shimodaira-Hasegawa-like approximate likelihood ratio test (SH-aLRT) appended with the flag -bnni. 2. Topology Test files: Input file for testing placement of *Dinorhax* (Dinorhax.treels) and *Trichotoma* (Trichotoma.treels). These tests include approximately unbiased (AU), bootstrap proportion (BP), SH-aLRT, Kishino-Hasegawa (KH), and expected likelihood weight (ELW) using 1,000 resampling estimated log-likelihoods (RELL) in IQ-TREE.
DOI: 10.21223/p3/qj10b7
title: Dataset for: Participatory Varietal Selection of 4 frost tolerant clones in the localities of Aeropuerto, Allato, Chacapunco and Occo Centro in Huancavelica, Peru

description: The Mother and Baby (M&B) trial methodology was adapted by CIP for Participatory Variety Selection (PVS) through decentralized evaluation networks and multi-year evaluations in potato growing areas in the Andean region. The M&B trial design encourages active participation of farmers through the application of treatments in their own plots called "Baby trials" (i.e. farmer managed trials) and in fields with an experimental design called "Mother trials" (i.e. researcher managed trials), as well as through systematic evaluations and selections of treatments. Objective: Analyze characteristics, attributes and preferences that men and women have when selecting a new potato variety at the phase of flowering and harvesting. A M&B trial was performed to evaluate 4 clones with frost tolerance in the localities of Aeropuerto, Allato, Chacapunco y Occo Centro, in Angares province, in Huancavelica department, Peru. The trial design was a Randomized Complete Block Design (RCBD) with 3 replicates for Mother trials and 3 replicates during 2012-2013. In this experiment characteristics of plant (size, type of foliage), yield, desirable quality, pest and disease resistance during flowering and harvesting were evaluated. Total number of participants at flowering phase was 12(men=12 and women=0), 7(men=4, women = 3), 6(men=2, women = 4) and 8(men=5, women = 3) in the localities of Aeropuerto, Allato, Chacapunco y Occo Centro respectively. The number of participants at harvesting phase was 23 (men=17 and women=6), 8 (men=4, women = 4), 10 (men=5, women = 5), 21 (men=11, women = 9) in the four localities respectively.
DOI: 10.15468/dl.u272wn
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.12_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Ancyloxypha numitor"
 ]
}

 The dataset includes 38 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004086-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18404896
title: Ridgecrest, CA 2008-2024 microseismicity catalog

description: Earthquake catalog built with machine-learning-based and matched-filtering techniques. The catalog covers the region around Ridgecrest, California between 2008 and 2024. The catalog is divided into two files, one spanning the period before the beginning on the 2019 Ridgecrest sequence, which started with a large M6.4 event of 2019-07-04, and the other file spanning the period after.

 

The two catalog files are organized :



event_id: a unique event identifier,

origin_time: origin time, UTC, of the event,

longitude: longitude in decimal system,

latitude: latitude in decimal system,

depth: depth in km,

hmax_unc: maximum horizontal uncertainty in km (from uncertainty covariance ellipsoid),

hmin_unc: minimum horizontal uncertainty in km (from uncertainty covariance ellipsoid),

az_hmax_unc: azimuth (angle from north) of maximum horizontal uncertainty in degrees,

vmax_unc: maximum vertical horizontal uncertainty in km (from uncertainty covariance ellipsoid),

Mw: moment magnitude, !! this column is mostly empty since most events were not well enough recorded to estimate a moment magnitude !!

Mw*: an approximate moment magnitude (see reference),

n_dev: the number of correlation-coefficient standard deviations for matched-filter detections (threshold was 8),

tt_rms: the travel-time root-mean-square residual, in seconds. Matched-filter detected events that couldn't be relocated have NaNs,

mining (in the pre-mainshock catalog only): anthropogenic event flag.


 

The catalog creation process did not focus on obtaining correct magnitudes for large events. The automatic calculation is expected to break down for moment magnitudes larger than 4. For these large events, use the SCSN catalog's magnitudes.

 

Reference:

Eric Beaucé, Piero Poli, Felix Waldhauser, Benjamin Holtzman and Christopher H. Scholz. Shift and increase in tidal modulation of seismicity in the Ridgecrest fault zone before and after the 2019 magnitude 7.1 earthquake. In review at Bulletin of Seismological Society of America.
DOI: 10.5281/zenodo.18404895
title: Ridgecrest, CA 2008-2024 microseismicity catalog

description: Earthquake catalog built with machine-learning-based and matched-filtering techniques. The catalog covers the region around Ridgecrest, California between 2008 and 2024. The catalog is divided into two files, one spanning the period before the beginning on the 2019 Ridgecrest sequence, which started with a large M6.4 event of 2019-07-04, and the other file spanning the period after.

 

The two catalog files are organized :



event_id: a unique event identifier,

origin_time: origin time, UTC, of the event,

longitude: longitude in decimal system,

latitude: latitude in decimal system,

depth: depth in km,

hmax_unc: maximum horizontal uncertainty in km (from uncertainty covariance ellipsoid),

hmin_unc: minimum horizontal uncertainty in km (from uncertainty covariance ellipsoid),

az_hmax_unc: azimuth (angle from north) of maximum horizontal uncertainty in degrees,

vmax_unc: maximum vertical horizontal uncertainty in km (from uncertainty covariance ellipsoid),

Mw: moment magnitude, !! this column is mostly empty since most events were not well enough recorded to estimate a moment magnitude !!

Mw*: an approximate moment magnitude (see reference),

n_dev: the number of correlation-coefficient standard deviations for matched-filter detections (threshold was 8),

tt_rms: the travel-time root-mean-square residual, in seconds. Matched-filter detected events that couldn't be relocated have NaNs,

mining (in the pre-mainshock catalog only): anthropogenic event flag.


 

The catalog creation process did not focus on obtaining correct magnitudes for large events. The automatic calculation is expected to break down for moment magnitudes larger than 4. For these large events, use the SCSN catalog's magnitudes.

 

Reference:

Eric Beaucé, Piero Poli, Felix Waldhauser, Benjamin Holtzman and Christopher H. Scholz. Shift and increase in tidal modulation of seismicity in the Ridgecrest fault zone before and after the 2019 magnitude 7.1 earthquake. In review at Bulletin of Seismological Society of America.
DOI: 10.5061/dryad.x0k6djhtp
title: Data from: Precipitation and temperature primarily determine the reptile distributions in China

description: Reptiles make up one-third of tetrapods, however they are often omitted
 from global conservation analyses. Understanding the determinants of
 reptile distribution is the foundation for reptile conservation research.
 We assembled a dataset on the distribution of 231 reptile species (nearly
 50% of recorded species in China). We then investigated the association of
 species range filling (the proportion of observed ranges compared to
 species potential climate distributions) with climate, range size,
 topography, and human activity, using three regression methods. At the
 species level, we found the most primary factors influencing the recent
 distribution pattern of reptiles across China were the mean annual
 precipitation (MAP) and the mean annual temperature (MAT). In contrast,
 human activity came in last. Similarly, at aspatial level, MAP and MAT
 were still the most important factors. Geographically, the south and east
 of China support the highest reptile diversity, partially due to high
 precipitation. Contrary to the prevailing notion that reptile
 distributions are primarily shaped by human activities, our study
 re-emphasizes the importance of climate in determining reptile
 distribution. It accentuates the necessity of integrating climate
 variables into future animal conservation strategies in China. Our
 findings also offer valuable insights for informing conservation
 practices, including the site planning of natural reserves and national
 parks, as well as monitoring of environmental factors in protected areas.
description: 614 pieces of literature for reptile occurrence records in
 China Results of this analysis
description: # Data from: Precipitation and temperature primarily determine the reptile
 distributions in China
 [https://doi.org/10.5061/dryad.x0k6djhtp](https://doi.org/10.5061/dryad.x0k6djhtp) ## Description of the data and file structure The first excel offer 614 pieces of literature for reptile occurrence records in China, the second excel offer results of analysis. Our data description is in excel files. 'NA' value in the results represent so that there's not not applicable. ## Sharing/Access information The data that support the findings of this study are also available in supplementary material of this paper, refer 10.1111/ecog.07005.
DOI: 10.5061/dryad.vt4b8gv1k
title: Data from: Particle-associated bacterioplankton communities across the Red Sea

description: Pelagic particle-associated bacterioplankton play crucial roles in marine
 ecosystems, influencing biogeochemical cycling and ecosystem functioning.
 However, their diversity, composition, and dynamics remain poorly
 understood, particularly in unique environments such as the Red Sea. In
 this study, we employed eDNA metabarcoding to comprehensively characterise
 bacterioplankton communities associated with pelagic particles in a
 three-dimensional assessment spanning depths from the surface to up to
 2300 m along the full length of the eastern Red Sea within the exclusive
 economic zone of the Kingdom of Saudi Arabia. Our results reveal a diverse
 assemblage of taxa, with Proteobacteria, Cyanobacteria and Planktomycetota
 being the dominant phyla. We identified pronounced spatial variability in
 community composition among five major Red Sea geographical regions with a
 third of all amplicon sequence variants being unique to the Southern Red
 Sea in contrast to a very homogenous distribution along the water column
 depth gradient. Our findings contribute to a deeper understanding of
 microbial ecology in the Red Sea and provide valuable insights into the
 factors governing pelagic particle-associated bacterioplankton communities
 in this basin.
description: # Particle-associated bacterioplankton communities across the Red Sea
 Dataset DOI: [10.5061/dryad.vt4b8gv1k](10.5061/dryad.vt4b8gv1k) ##
 Description of the data and file structure Data for this manuscript was
 collected via filtering of seawater obtained by BottleNet sampling to
 retain environmental DNA, which then was extracted and eluted and
 sequenced, targeting the V3V4 region of the 16S SSU rRNA gene to describe
 bacterial communities. In addition, environmental parameters of the
 seawater were collected using a CTD.  ### Files and variables #### File:
 clean\_BPBN.csv ##### Variables * asv: obtained ASVs from processing raw
 sequencing fastq files using the DADA2 algorithm.  * RSW 7 - RSW 282:
 distinct sample location, GPS, depth and environmental parameters provided
 in Supplementary File 1.  * Kingdom, Phylum, Class, Order, Family, Genus,
 Species: bacterial taxonomy ranks. (NA: no valid measurement)
 **Description:** ASV-to-sample matrix  ZENODO files: NA in Supplementary
 File 1: Fluorometer did not measure valid data. NA in Supplementary File
 5: Calculation was not possible.  ## Code/software All code used for this
 publication can be accessed
 under https://github.com/lexscience/Fruehe2024-Bacterioplankton, together
 with all files needed to reproduce the data and output files generated for
 the publication.  ## Access information Other publicly accessible
 locations of the data: *
 [https://github.com/lexscience/Fruehe2024-Bacterioplankton](https://github.com/lexscience/Fruehe2024-Bacterioplankton) Data was derived from the following sources: * None.