cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.76p9017
title: Data from: The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures

description: Species vulnerability to climate change involves an interaction between
 the magnitude of change (exposure) and a species’ tolerance to change. We
 evaluated fish species vulnerability to predicted stream temperature
 increases by examining warming tolerances across the Wyoming fish
 assemblage. Warming tolerance combines stream temperature with a thermal
 tolerance metric to estimate how much warming beyond current conditions a
 species can withstand. Brown trout, rainbow trout, and burbot had the
 lowest warming tolerances and highest proportion of currently occupied
 sites that will become unsuitable under predicted temperature increases.
 These most vulnerable species were coldwater species, but had neither the
 lowest thermal tolerances, nor would they experience the greatest
 temperature increases. Our results highlight the importance of considering
 the interaction of exposure and warming tolerance when predicting climate
 change vulnerability and demonstrate an approach that can be applied
 broadly.
description: Wyoming fish and climate
 change scenario dataPresence/ absence data
 for 1559 sites in Wyoming and associated stream temperature data.Stream
 temperatures were derived from models generated by the United States
 Forest Service for the western United States at a 1-km resolution
 (http://www.fs.fed.us/rm/boise/AWAE/projects/NorWeST.html)SupplementaryMaterialData.xlsx
DOI: 10.5061/dryad.fv090
title: Data from: Moose browsing alters tree diversity effects on birch growth and insect herbivory

description: Producer diversity is known to affect a wide range of ecosystem processes
 including plant growth and insect pest resistance. Consumers such as
 mammalian herbivores too have been shown to modify plant growth and insect
 herbivory by triggering changes in host plants. However, few studies have
 investigated whether consumer effects interact with plant species
 diversity effects on a focal plant. To unravel consumer-diversity
 interactions, we recorded both the presence and intensity of winter
 browsing by moose (Alces alces) on silver birch (Betula pendula) in a
 long-term forest diversity experiment in Finland and measured birch tree
 growth as well as insect chewing damage during the following growing
 season. Although browsing on birch by moose was not affected by tree
 species richness, the intensity of moose damage altered tree diversity
 effects on birch tree growth. At minor browsing intensity, tree height,
 trunk diameter and canopy projections showed positively-humped
 relationships with tree diversity, peaking at 3-species mixtures. Growth
 of moderately browsed trees increased with tree species richness, but
 growth of severely browsed birch trees was unaffected. Moose browsing also
 altered the direction of tree diversity effects on insect herbivory on
 birch. Unbrowsed trees experienced lower insect chewing damage in mixed
 stands (associational resistance) whilst browsed trees suffered more
 insect chewing damage in diverse stands (associational susceptibility).
 Increasing browsing intensity also reversed the relationship between tree
 species richness and insect chewing damage from negative to positive. The
 observed interactions between moose browsing and tree species richness
 effects could be explained by lower canopy cover of more diverse stands
 compared to birch monocultures, leading to increased re-growth capacity
 and more high-quality foliage of browsed birch trees in more open diverse
 stands. Our findings demonstrate that both the presence and intensity of
 mammalian browsing may modify the magnitude and even the direction of tree
 diversity effects on tree growth and susceptibility to insect herbivory.
 Differences in consumer impact among studies may thus potentially explain
 much of the observed variability in plant diversity effects on ecosystem
 functioning and must therefore be taken into account in future studies.
description: Muiruri et
 al._FunEcol_DRYAD DATAMuiruri et al._DRYAD
 DATA.xlsx
DOI: 10.5061/dryad.81r20
title: Data from: Genetic effects on life-history traits in the Glanville fritillary butterfly

description: Background: Adaptation to local habitat conditions may lead to the natural
 divergence of populations in life-history traits such as body size, time
 of reproduction, mate signaling or dispersal capacity. Given enough time
 and strong enough selection pressures, populations may experience local
 genetic differentiation. The genetic basis of many life-history traits,
 and their evolution according to different environmental conditions remain
 however poorly understood. Methods: We conducted an association study on
 the Glanville fritillary butterfly, using material from five populations
 along a latitudinal gradient within the Baltic Sea region, which show
 different degrees of habitat fragmentation. We investigated variation in
 10 principal components, cofounding in total 21 life-history traits,
 according to two environmental types, and 33 genetic SNP markers from 15
 candidate genes. Results: We found that nine SNPs from five genes showed
 strong trend for trait associations (p-values under 0.001 before
 correction). These associations, yet non-significant after multiple test
 corrections, with a total number of 1,086 tests, were consistent across
 the study populations. Additionally, these nine genes also showed an
 allele frequency difference between the populations from the northern
 fragmented versus the southern continuous landscape. Discussion: Our study
 provides further support for previously described trait associations
 within the Glanville fritillary butterfly species across different spatial
 scales. Although our results alone are inconclusive, they are concordant
 with previous studies that identified these associations to be related to
 climatic changes or habitat fragmentation within the Åland population.
description: LarvalTrait-AssociationPGi_Data2007excel file, larval data from individuals collected in the Fall 2006Oviposition-ALOLSAUP-2010Oviposition data from cage experiment that took place in Summer 2010, individuals collected in the Fall 2009Life-Histories_ALOLSAUP_2010Life-history traits, including larval traits and adult traits, of individuals collected in the fall 2009 that were adult in the Summer 2010
DOI: 10.5061/dryad.q6r01
title: Data from: Visual phenotype matching: cues to paternity are present in rhesus macaque faces

description: The ability to recognize kin and thus behaviourally discriminate between
 conspecifics based on genetic relatedness is of importance both in
 acquiring inclusive fitness benefits and to enable optimal inbreeding. In
 primates, mechanisms allowing recognition of paternal relatives are of
 particular interest, given that in these mating systems patrilineal
 information is unlikely to be available via social familiarity. Humans use
 visual phenotype matching based on facial features to identify their own
 and other's close relatives, and recent studies suggest similar
 abilities may be present in other species. However it is unclear to what
 extent familial resemblances remain detectable against the background
 levels of relatedness typically found within demes in the wild – a
 necessary condition if facial cues are to function in kin recognition
 under natural conditions. Here, we experimentally investigate whether
 parent-offspring relationships are discernible in rhesus macaque (Macaca
 mulatta) faces drawn from a large free-ranging population more
 representative of the latter scenario, and in which genetic relatedness
 has been well quantified from pedigrees determined via molecular markers.
 We used the human visual system as a means of integrating multiple types
 of facial cue simultaneously, and demonstrate that paternal, as well as
 maternal, resemblance to both sons and daughters can be detected even by
 human observers. Experts performed better than participants who lacked
 previous experience working with nonhuman primates. However the finding
 that even naïve individuals succeeded at the task underlines the strength
 of the phenotypic cues present in faces.
description: Assessment of kinship
 cues in rhesus macaque facesResponse data collected
 from human subjects performing a computer-based task in the laboratory.
 The task involved selecting which of two alternative images presented
 simultaneously onscreen was perceived as more similar to a target image
 which was presented at the same time. The images were of free-ranging
 adult rhesus macaque (Macaca mulatta) faces, collected in the field at
 Cayo Santiago, Puerto Rico. The sex and degree of genetic relatedness
 between the individual macaques portrayed onscreen was systematically
 varied, in order to examine whether humans can detect cues of kinship in
 the faces of rhesus macaques.Kinship_cues_in_rhesus_faces.csv
DOI: 10.5061/dryad.pn2mq57
title: Data from: Inter-continental karyotype-environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly

description: Large chromosomal rearrangements are thought to facilitate adaptation to
 heterogeneous environments by limiting genomic recombination. Indeed,
 inversions have been implicated in adaptation along environmental clines
 and in ecotype specialisation. Here, we combine classical ecological
 studies and population genetics to investigate an inversion polymorphism
 previously documented in Europe among natural populations of the seaweed
 fly Coelopa frigida along a latitudinal cline in North America. We test if
 the inversion is present in North America and polymorphic, assess which
 environmental conditions modulate the inversion karyotype frequencies, and
 document the relationship between inversion karyotype and adult size. We
 sampled nearly 2,000 flies from 20 populations along several environmental
 gradients to quantify associations of inversion frequencies to
 heterogeneous environmental variables. Genotyping and phenotyping showed a
 widespread and conserved inversion polymorphism between Europe and
 America. Variation in inversion frequency was significantly associated
 with environmental factors, with parallel patterns between continents,
 indicating that the inversion may play a role in local adaptation. The
 three karyotypes of the inversion are differently favoured across
 micro-habitats and represent life-history strategies likely maintained by
 the collective action of several mechanisms of balancing selection. Our
 study adds to the mounting evidence that inversions are facilitators of
 adaptation and enhance within-species diversity.
description: database_genotype_sizeIncludes information on origin, sex, genotype and wing length for all the 1967 wild samples genotyped in the 20 populations described in the article. Wing length is missing when the specimen wings was too damaged to be measure accurately.Adh_unphased_Dryad_march18Sequences of Adh locus aligned and unphasedRib_unphased_Dryad_March2018Sequences of Rib locus aligned and unphasedMet_unphased_dryad_march2018Sequences of Met locus aligned and unphasedAdh_phased_Dryad_March18.phySequences of Adh locus aligned and phased (phylip format)Met_phased_dryad_March18.phySequences of Met locus aligned and phased (phylip format)Rib_phased_Dryad_March18.phySequences of Rib locus aligned and phased (phylip format)
DOI: 10.5061/dryad.g36qr
title: Data from: Climate change leads to increasing population density and impacts of a key island invader

description: The considerable threats of invasive rodents to island biodiversity are
 likely to be compounded by climate change. Forecasts for such interactions
 have been most pronounced for the Southern Ocean islands where
 ameliorating conditions are expected to decrease thermal and resource
 restrictions on rodents. Firm evidence for changing rodent populations in
 response to climate change, and demonstrations of associated impacts on
 the terrestrial environment, are nonetheless entirely absent for the
 region. Using data collected over three decades on sub-Antarctic Marion
 Island, we tested empirically whether mouse populations have changed
 through time and whether these changes can be associated significantly
 with changing abiotic conditions. Changes in invertebrate populations,
 which have previously been attributed to mouse predation, but with little
 explicit demographic analysis, were also examined to determine whether
 they can be associated with changing mouse populations. The total number
 of mice on the island at annual peak density increased by 530.0% between
 1979-80 and 2008-11. This increase was due to an advanced breeding season,
 which was robustly related to the number of precipitation-free days during
 the non-breeding season. Mice directly reduced invertebrate densities,
 with biomass losses of up to two orders of magnitude in some habitats.
 Such invertebrate declines are expected to have significant consequences
 for ecosystem processes over the long term. Our results demonstrate that
 as climate change continues to create ameliorating conditions for invasive
 rodents on sub-Antarctic islands, the severity of their impacts will
 increase. They also emphasize the importance of rodent eradication for the
 restoration of invaded islands.
description: Marion Island mouse
 SECRZip file contains
 capture-mark-recapture file formatted for SECR analysis, trapping grid
 files, and session covariates for Marion Island mice
 1991-2011Marion_invertebrate_biomassInvertebrate biomass 1976-77, 1996-97, and 2006-07Marion_mouse_diet_2008-11Stomach contents of mice collected on Marion Island 2008-11Marion_mouse_density_climateData for Bayesian meta-analysis exploring role of weather variables on changing mouse densities
DOI: 10.15468/dl.66chbj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-120.0",
 "HasCoordinate is True",
 "HasGeospatialIssue is False",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 {
 "or" : [
 "GadmGid is U",
 "GadmGid is S",
 "GadmGid is A",
 "GadmGid is .",
 "GadmGid is 3",
 "GadmGid is 8",
 "GadmGid is _",
 "GadmGid is 1"
 ]
 },
 "Year 2015-2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000634-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.vs14m
title: Data from: Demographic history of the trace metal hyperaccumulator Noccaea caerulescens (J. Presl and C. Presl) F. K. Mey. in Western Europe

description: Noccaea caerulescens (Brassicaceae) is a major pseudometallophyte model
 for the investigation of the genetics and evolution of metal
 hyperaccumulation in plants. We studied the population genetics and
 demographic history of this species to advance the understanding of
 among-population differences in metal hyperaccumulation and tolerance
 abilities. Sampling of seven to 30 plants was carried out in 62 sites in
 Western Europe. Genotyping was carried out using a combination of new
 chloroplast and nuclear neutral markers. A strong genetic structure was
 detected, allowing the definition of three genetic subunits. Subunits
 showed a good geographic coherence. Accordingly, distant metallicolous
 populations generally belonged to distinct subunits. Approximate Bayesian
 computation analysis of demographic scenarios among subunits further
 supported a primary isolation of populations from the southern Massif
 Central prior to last glacial maximum, whereas northern populations may
 have derived during postglacial recolonization events. Estimated
 divergence times among subunits were rather recent in comparison with the
 species history, but certainly before the establishment of anthropogenic
 metalliferous sites. Our results suggest that the large-scale genetic
 structure of N. caerulescens populations pre-existed to the local
 adaptation to metalliferous sites. The population structure of
 quantitative variation for metal-related adaptive traits must have
 established independently in isolated gene pools. However, features of the
 most divergent genetic unit (e.g. extreme levels of Cd accumulation
 observed in previous studies) question the putative relationships between
 adaptive evolution of metal-related traits and subunits isolation.
 Finally, admixture signals among distant metallicolous populations suggest
 a putative role of human activities in facilitating long-distance genetic
 exchanges.
description: Datasets and analysis
 used in this studySNP and microsatellite
 genotyping, STRUCTURE and DIYABC input files used in this
 studyData
 accessibility.rar
DOI: 10.5061/dryad.bs54p
title: Data from: The causes and ecological correlates of head scale asymmetry and fragmentation in a tropical snake

description: The challenge of identifying the proximate causes and ecological
 consequences of phenotypic variation can be facilitated by studying traits
 that are usually but not always bilaterally symmetrical; deviations from
 symmetry likely reflect disrupted embryogenesis. Based on a 19-year
 mark-recapture study of &gt;1300 slatey-grey snakes (Stegonotus
 cucullatus) in tropical Australia, and incubation of &gt;700 eggs, we
 document developmental and ecological correlates of two morphological
 traits: asymmetry and fragmentation of head scales. Asymmetry was
 directional (more scales on the left side) and was higher in individuals
 with lower heterozygosity, but was not heritable. In contrast,
 fragmentation was heritable and was higher in females than males. Both
 scale asymmetry and fragmentation were increased by rapid embryogenesis
 but were not affected by hydric conditions during incubation. Snakes with
 asymmetry and fragmentation exhibited slightly lower survival and
 increased (sex-specific) movements, and females with more scale
 fragmentation produced smaller eggs. Counterintuitively, snakes with more
 asymmetry had higher growth rates (possibly reflecting trade-offs with
 other traits), and snakes with more fragmentation had fewer parasites
 (possibly due to lower feeding rates). Our data paint an unusually
 detailed picture of the complex genetic and environmental factors that, by
 disrupting early embryonic development, generate variations in morphology
 that have detectable correlations with ecological performance.
description: Stegonotus cucullatus
 head scale dataMorphometric and mark
 recapture data on lab-reared and wild slatey grey
 snakes.for
 dryad.xlsx
DOI: 10.5061/dryad.sk76g
title: Data from: Does water shortage generate water stress? An ecohydrological approach across Mediterranean plant communities

description: The interactions between hydrological and ecological processes are key
 issues to improve our predictions of ecosystem responses to increasing
 droughts. However, predicting the dynamics and the impacts of vegetation
 water stress remains challenging because of complex ecohydrological
 feedbacks. The ecohydrological optimality approach proposes that
 functional adjustments within plant communities may buffer the increase in
 vegetation water stress despite local water shortage. This study aimed to
 test whether vegetation water stress may be invariant across contrasting
 plant communities, reflecting possible optimality processes. We addressed
 the following question: does a lower soil water storage capacity under the
 same climate generate greater vegetation water stress over time? We
 hypothesized that vegetation water stress would be buffered around a low
 and constant level through the adjustment of vegetation biomass
 productivity net primary productivity (NPP), evapotranspiration (ET)
 and/or water-use efficiency (WUE) in relation with local soil water
 storage capacity. We monitored 12 native plant communities distributed
 along a gradient of soil water storage capacity (ranging from 20 mm to 120
 mm) during five successive years. Net primary productivity, ET, WUE as
 well as soil water dynamics were assessed and modelled for each plant
 community throughout the 5 years of study. Vegetation water stress was
 determined for each plant community as the deviation of between actual ET
 and their maximum ETm rate achieved under non-limiting conditions. We
 found that NPP and ET were together proportionally related to local soil
 water storage capacity across the 5 years of study while WUE did not
 differ between plant communities. Vegetation water stress was found quite
 similar for all plant communities whatever the soil water storage
 capacity. These results suggested that vegetation water stress was
 strongly buffered by the community-level plant growth rates and total
 water use along the soil gradient, but not by WUE. Our results suggest
 that stressful environments rarely exist for plant communities. A dynamic
 scaling relationship between NPP and ET may underpin the control of
 vegetation water stress over seasonal and pluriannual time-scales. Such
 results could contribute to better understanding processes associated with
 ecohydrological optimality and improve the predictions of vegetation
 dynamics under increasing droughts.
description: Vegetation aboveground
 biomassField data obtained from
 aboveground biomass assessment across the 12 plant communities under study
 throughout the 5 years of study.biomass.csvSoil water content dynamicsField data obtained from soil water monitoring using capacitance moisture probes across the 12 plant communities under study throughout the 5 years of study.SWC.csv
DOI: 10.5061/dryad.1b2k5
title: Data from: Reconciling molecular phylogeny, morphological divergence and classification of Madagascan narrow-mouthed frogs (Amphibia: Microhylidae)

description: A recent study clarified several aspects of microhylid phylogeny by
 combining DNA sequences from Sanger sequencing and anchored phylogenomics,
 although numerous aspects of tree topology proved highly susceptible to
 data partition and chosen model. Although the phylogenetic results of the
 study were in conflict with previous studies, the authors made several
 changes to the taxonomy of Madagascar’s cophyline microhylids. We
 re-analysed part of their data together with our own molecular and
 morphological data. Based on a supermatrix of 11 loci, we propose a new
 phylogeny of the Cophylinae, and discuss it in the context of a newly
 generated osteological dataset. We found several sample
 misidentifications, partially explaining their deviant results, and
 propose to resurrect the genera Platypelis and Stumpffia from the synonymy
 of Cophyla and Rhombophryne, respectively. We provide support for the
 previous genus-level taxonomy of this subfamily, and erect a new genus,
 Anilany gen. nov., in order to eliminate paraphyly of Stumpffia and to
 account for the osteological differences observed among these groups. Deep
 nodes in our phylogeny remain poorly supported, and future works will
 certainly refine our classification, but we are confident that these will
 not produce large-scale rearrangements.
description: Cophyline microhylids
 supplementary filesThe file
 Madagascar_microhylid_matrix.xls contains information on the species,
 sampling localities of the individuals sequenced for the 16S rRNA
 mitochondrial fragment, voucher information of each amplified fragment,
 GenBank accession numbers and all the analysed fragments. The file
 MrCophylinae_100Mfinal.nex contains the alignment used for the performed
 molecular analyses.cophyline
 microhylids.zip