cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25909/23487380.v1
title: Data for: Adaptive tails? parallel evolution of expanded tails in monsoonal tropics lineages of an Australian gecko radiation (<i>Oedura</i>)

description: Files included here are:R script of analyses for paper "Oedura_3D_analysis.R", including all analyses and code for figuresR script to calculate Surface Area and Volume of tails from 3D meshes (.ply files) "SAV.R"R script demonstrating tail straightening functions for coordinate data and meshes "Straightening tails.R"R source file of tail straightening functions for coordinate data and meshes "Straightening tails source.R"Zip folder of .ply files made from 3D structured light surface scanningZip folder of .txt files [Morphologika format] of landmark coordinate data collected in Stratovan Checkpoint on .ply filesFiles for analysis with "Oedura_3D_analysis.R": "classifier specimens.csv" conttains information about every specimen; "ExternalData.csv" are caliper measurements from museum specimens; "Oedura Tail SA V.csv" Surface Area and Volume for each specimen, calculated from "SAV.R"; " classifier species.csv" species-level ecological data; "diplodactyloidea.tree" phylogenetic tree file.<br>Details of methods are in adjoining paper
DOI: 10.25909/23512053
title: Dataset for: Tibby J, Marshall JC, Lobegeiger J, Amos K, Pickering G, Myburgh T (Accepted (25/5/2023)) Sedimentation from landscape clearance induced soil erosion threatens waterhole persistence in a semi-arid river system, southern Queensland, Australia. <em>Marine and Freshwater Research</em>. https://doi.org/10.1071/MF23016

description: Diatom relative abundance and magnetic susceptibilty data from Moonie River waterhole cores. Data are described and displayed in the publication
DOI: 10.25909/23512053.v2
title: Dataset for: Tibby J, Marshall JC, Lobegeiger J, Amos K, Pickering G, Myburgh T (Accepted (25/5/2023)) Sedimentation from landscape clearance induced soil erosion threatens waterhole persistence in a semi-arid river system, southern Queensland, Australia. <em>Marine and Freshwater Research</em>. https://doi.org/10.1071/MF23016

description: Diatom relative abundance and magnetic susceptibilty data from Moonie River waterhole cores. Data are described and displayed in the publication
DOI: 10.25909/23528958
title: <em>Eoandromeda octobrachiata </em>surface scans

description: High resolution three-dimensional surface scans of <em>Eoandromeda octobrachiata</em>.
DOI: 10.25909/23528958.v1
title: <em>Eoandromeda octobrachiata </em>surface scans

description: High resolution three-dimensional surface scans of <em>Eoandromeda octobrachiata</em>.
DOI: 10.25909/23538771
title: CCBS2 De-identified data Figshare.xlsx

description: These data report the causes of blindness amongst all students attending Cambodian Schools for the blind in December 2021.
DOI: 10.25909/23538771.v1
title: CCBS2 De-identified data Figshare.xlsx

description: These data report the causes of blindness amongst all students attending Cambodian Schools for the blind in December 2021.
DOI: 10.25909/23557194
title: New chromosome-scale genomes provide insights into marine adaptations of sea snakes (<em>Hydrophis</em>: Elapidae)

description: This repository contains data files relating to the genome assembly, annotation and genomic investigation of <em>Hydrophis</em> sea snakes. In this dataset exists genome assemblies and their gene and repeat annotations, as well as data files relating to selection testing, phylogenetic and chromosomal synteny analyses.
DOI: 10.25909/23557194.v1
title: New chromosome-scale genomes provide insights into marine adaptations of sea snakes (<em>Hydrophis</em>: Elapidae)

description: This repository contains data files relating to the genome assembly, annotation and genomic investigation of <em>Hydrophis</em> sea snakes. In this dataset exists genome assemblies and their gene and repeat annotations, as well as data files relating to selection testing, phylogenetic and chromosomal synteny analyses.
DOI: 10.25909/23574282
title: Innate response to first feeding in Octopus berrima hatchlings despite embryonic food imprinting - Dataset and R Script

description: Abstract: Food imprinting has both ecological and evolutionary significance but the generality of these patterns for octopods remains unknown. We aim to determine the prey preference of Octopus berrima hatchlings and whether it may be modified through imprinting. Firstly, hatchlings were given isopods, amphipods and mussels to determine their prey preference ranking. In a separate experiment, embryos were exposed to the visual and chemical stimuli of either isopods, amphipods or mussels separately at least a week before hatching. A prey preference test on hatchlings using all three prey types was conducted. We found that O. berrima had a preference ranking of isopods &gt; amphipods &gt; mussels. However, they retained their isopod prey preference regardless of the prey type they were embryonically exposed to, indicating that it is likely pre-determined as a result of innate biological processes rather than from life experience, providing evidence that imprinting does not occur in O. berrima.
DOI: 10.25909/23574282.v1
title: Innate response to first feeding in Octopus berrima hatchlings despite embryonic food imprinting - Dataset and R Script

description: Abstract: Food imprinting has both ecological and evolutionary significance but the generality of these patterns for octopods remains unknown. We aim to determine the prey preference of Octopus berrima hatchlings and whether it may be modified through imprinting. Firstly, hatchlings were given isopods, amphipods and mussels to determine their prey preference ranking. In a separate experiment, embryos were exposed to the visual and chemical stimuli of either isopods, amphipods or mussels separately at least a week before hatching. A prey preference test on hatchlings using all three prey types was conducted. We found that O. berrima had a preference ranking of isopods &gt; amphipods &gt; mussels. However, they retained their isopod prey preference regardless of the prey type they were embryonically exposed to, indicating that it is likely pre-determined as a result of innate biological processes rather than from life experience, providing evidence that imprinting does not occur in O. berrima.
DOI: 10.25909/23577993
title: Risk of Bias Assessment Table for "The global prevalence and severity of dental caries among racially minoritized children: A systematic review and meta-analysis."

description: This is the metadata for the risk of bias assessment of all 75 included studies for the systematic review. All included articles were read in full, and methodological quality was rated independently by two reviewers (SN & SS) using a modified version of the Newcastle Ottawa scale for prevalence studies [Wells et al., 2014]. Studies were scored as “very good” (9-10 points), “good” (7-8 points), “satisfactory” (5-6 points), and “unsatisfactory” (0-4 points). All studies were included in the review regardless of their quality.
DOI: 10.25909/23577993.v1
title: Risk of Bias Assessment Table for "The global prevalence and severity of dental caries among racially minoritized children: A systematic review and meta-analysis."

description: This is the metadata for the risk of bias assessment of all 75 included studies for the systematic review. All included articles were read in full, and methodological quality was rated independently by two reviewers (SN & SS) using a modified version of the Newcastle Ottawa scale for prevalence studies [Wells et al., 2014]. Studies were scored as “very good” (9-10 points), “good” (7-8 points), “satisfactory” (5-6 points), and “unsatisfactory” (0-4 points). All studies were included in the review regardless of their quality.
DOI: 10.25909/23584173
title: Datasets - Coral responses to 2016 marine heatwave

description: Datasets are described in the MS entitled "Coral species responses to a catastrophic marine heatwave are decoupled from changes in total coral cover"
DOI: 10.25909/23584173.v2
title: Datasets - Coral responses to 2016 marine heatwave

description: Datasets are described in the MS entitled "Coral species responses to a catastrophic marine heatwave are decoupled from changes in total coral cover"
DOI: 10.25909/23683422
title: Data for: Shape and size variation in elapid snake fangs, and the effects of phylogeny and diet

description: <strong> DietRates_BEAST.zip</strong> contains: DietRates_con.tre DietRates_con.tre.pdf DietRates.xml LeeEtAl.tree <br> <strong>GM_data_and_code.zip </strong>contains: Elapid fangs analyses.Rproj Elapid fangs analyses.R digit.curves.ES.r Diet.csv disparity.csv gpa.csv sliders.csv usrMat.anterior.csv usrMat.lateral.csv Dem_ves.ply <em>landmark data for each species as</em> .nts <em>formatted files (x70)</em> <br>
DOI: 10.25909/23683422.v1
title: Data for: Shape and size variation in elapid snake fangs, and the effects of phylogeny and diet

description: <strong> DietRates_BEAST.zip</strong> contains: DietRates_con.tre DietRates_con.tre.pdf DietRates.xml LeeEtAl.tree <br> <strong>GM_data_and_code.zip </strong>contains: Elapid fangs analyses.Rproj Elapid fangs analyses.R digit.curves.ES.r Diet.csv disparity.csv gpa.csv sliders.csv usrMat.anterior.csv usrMat.lateral.csv Dem_ves.ply <em>landmark data for each species as</em> .nts <em>formatted files (x70)</em> <br>
DOI: 10.25909/23694762
title: <strong>The</strong> <strong>endometrial transcriptome transition preceding receptivity to embryo implantation in mice</strong>

description: Supplemental Data associated with:
 
"<strong>The</strong> <strong>endometrial transcriptome transition preceding receptivity to embryo implantation in mice"</strong> 
<br>
Hon Yeung Chan1, Ha M. Tran1, Jimmy Breen1, John E. Schjenken1,2,3 and Sarah A. Robertson1*
<strong>Running title: Endometrial transcriptome at implantation</strong>
<br>
1The Robinson Research Institute and School of Biomedicine, University of Adelaide, Adelaide, SA 5000, Australia.
2Hunter Medical Research Institute, Infertility and Reproduction Research Program, New Lambton Heights, NSW 2305, Australia.
3Priority Research Centre for Reproductive Science, School of Environmental and Life Sciences, Discipline of Biological Sciences, The University of Newcastle, University Drive, Callaghan, NSW 2308, Australia
DOI: 10.25909/23694762.v1
title: <strong>The</strong> <strong>endometrial transcriptome transition preceding receptivity to embryo implantation in mice</strong>

description: Supplemental Data associated with:
 
"<strong>The</strong> <strong>endometrial transcriptome transition preceding receptivity to embryo implantation in mice"</strong> 
<br>
Hon Yeung Chan1, Ha M. Tran1, Jimmy Breen1, John E. Schjenken1,2,3 and Sarah A. Robertson1*
<strong>Running title: Endometrial transcriptome at implantation</strong>
<br>
1The Robinson Research Institute and School of Biomedicine, University of Adelaide, Adelaide, SA 5000, Australia.
2Hunter Medical Research Institute, Infertility and Reproduction Research Program, New Lambton Heights, NSW 2305, Australia.
3Priority Research Centre for Reproductive Science, School of Environmental and Life Sciences, Discipline of Biological Sciences, The University of Newcastle, University Drive, Callaghan, NSW 2308, Australia
DOI: 10.25909/23812068
title: The Heliostat Design Wind Loads Spreadsheet

description: Wind load predictions for heliostats are not provided in design codes because of their non-standard shape and the changes in wind velocity and turbulence in the lowest 10 m of the atmospheric boundary layer (ABL). The Heliostat Design Wind Loads Spreadsheet estimates the design wind loads on different heliostat sizes based on:(1) the dependence of wind load coefficients on turbulence intensity derived in our wind tunnel experiments,(2) the expected wind speed and turbulence intensity profiles in the full-scale ABL.Mean and peak design loads are calculated for a square-shaped heliostat based on the mean wind speed and the relevant aerodynamic coefficient. Critical load cases show the maximum value of the heliostat loads and aerodynamic coefficients for each load case.
DOI: 10.25909/23812068.v1
title: The Heliostat Design Wind Loads Spreadsheet

description: Wind load predictions for heliostats are not provided in design codes because of their non-standard shape and the changes in wind velocity and turbulence in the lowest 10 m of the atmospheric boundary layer (ABL). The Heliostat Design Wind Loads Spreadsheet estimates the design wind loads on different heliostat sizes based on:(1) the dependence of wind load coefficients on turbulence intensity derived in our wind tunnel experiments,(2) the expected wind speed and turbulence intensity profiles in the full-scale ABL.Mean and peak design loads are calculated for a square-shaped heliostat based on the mean wind speed and the relevant aerodynamic coefficient. Critical load cases show the maximum value of the heliostat loads and aerodynamic coefficients for each load case.
DOI: 10.25909/23812155
title: Spectroscopic Data and GTA Models

description: Spectroscopic data and GTA modelling results for the publication "From Light to Hydrogen: The Complete Life Cycle of Free Charges in Organic Photocatalytic Nanoparticles", which describes and models the photophysics of PM6:Y6 nanoparticles (NPs).Transient absorption (TA) data for Y6 NPs, PM6 NPs, 1:1 PM6:Y6 NPs with 800 nm or 400 nm pump, and 1:1 PM6:Y6 NPs with Pt and ascorbic acid.GTA modelling results are including in their corresponding TA data archives.2-dimensional electronic spectroscopy (2DES) data for Y6 NPs, PM6 NPs, and 1:1 PM6:Y6 NPsSteady-state absorbance and emission of the same samples
DOI: 10.25909/23812155.v1
title: Spectroscopic Data and GTA Models

description: Spectroscopic data and GTA modelling results for the publication "From Light to Hydrogen: The Complete Life Cycle of Free Charges in Organic Photocatalytic Nanoparticles", which describes and models the photophysics of PM6:Y6 nanoparticles (NPs).Transient absorption (TA) data for Y6 NPs, PM6 NPs, 1:1 PM6:Y6 NPs with 800 nm or 400 nm pump, and 1:1 PM6:Y6 NPs with Pt and ascorbic acid.GTA modelling results are including in their corresponding TA data archives.2-dimensional electronic spectroscopy (2DES) data for Y6 NPs, PM6 NPs, and 1:1 PM6:Y6 NPsSteady-state absorbance and emission of the same samples
DOI: 10.25909/23935650
title: 2014 Marker and Yield Data

description: 2014 Marker and Yield Data
DOI: 10.25909/23935650.v1
title: 2014 Marker and Yield Data

description: 2014 Marker and Yield Data
DOI: 10.25909/23937705
title: README.md

description: README file for the data published in Davidson et al. 2023
DOI: 10.25909/23937705.v1
title: README.md

description: README file for the data published in Davidson et al. 2023
DOI: 10.25909/23938428
title: Russell et al, 2023, Determining Environmental Drivers of Fine-Scale Variability in Blue Carbon Soil Stocks, Estuaries and Coasts

description: Dataset of soil organic carbon stocks collected for Russell et al 2023. Rmarkdown files containing code used for modelling stocks againast environmental drivers
DOI: 10.25909/23938428.v1
title: Russell et al, 2023, Determining Environmental Drivers of Fine-Scale Variability in Blue Carbon Soil Stocks, Estuaries and Coasts

description: Dataset of soil organic carbon stocks collected for Russell et al 2023. Rmarkdown files containing code used for modelling stocks againast environmental drivers
DOI: 10.25909/23996484
title: Rb-Sr dataset.xlsx

description: Rb-Sr dataset for manuscript entitled `<code><strong>Calibration methods for laser ablation Rb-Sr geochronology: comparisons and recommendation based on NIST glass and natural reference materials`</strong></code>
DOI: 10.25909/23996484.v1
title: Rb-Sr dataset.xlsx

description: Rb-Sr dataset for manuscript entitled `<code><strong>Calibration methods for laser ablation Rb-Sr geochronology: comparisons and recommendation based on NIST glass and natural reference materials`</strong></code>
DOI: 10.25909/24004062
title: Ecological generalism and physiology mediate species biogeographic ranges under ocean warming

description: Climate-driven species redistributions are often facilitated by niche modifications that increase a species’ chances of establishment in novel ecological communities. It is relatively well-understood how range-extending species adjust individual niche traits when entering novel environments, yet it remains unclear how modification of ecological niche traits collectively may alter the pace of species range-extensions or contractions. Here, we quantified habitat niche width, species abundance, and physiological performance of range-extending coral reef fishes and co-existing local temperate coastal fishes along a 2,000-km latitudinal gradient from tropical to temperate reefs in a global warming hotspot. We then assessed the dietary and behavioural niches and establishment potential of the same species to understand whether ecological generalism facilitates successful range-extension of coral reef fishes. At its temperate cold-range edge, one coral reef species (<i>Abudefduf vaigiensis</i>) that increased their habitat, dietary and behavioural niches collectively showed stronger establishment, but experienced decreased physiological performance (increased oxidative stress) compared to its core tropical range. Contrastingly, the three other coral reef species that showed unmodified habitat, dietary or behavioural niches showed lower establishment potential in their novel ranges. One temperate species showed decreased abundance, habitat niche width, and physiological performance at their warm-trailing edge compared to their core temperate range, while the other two temperate species showed contrasting responses. We conclude that ecological generalists might be more successful than ecological specialists during the initial stages of climate change, with increasing future warming further strengthening this pattern by physiologically benefitting tropical generalists but disadvantaging temperate specialists.
DOI: 10.25909/24004062.v1
title: Ecological generalism and physiology mediate species biogeographic ranges under ocean warming

description: Climate-driven species redistributions are often facilitated by niche modifications that increase a species’ chances of establishment in novel ecological communities. It is relatively well-understood how range-extending species adjust individual niche traits when entering novel environments, yet it remains unclear how modification of ecological niche traits collectively may alter the pace of species range-extensions or contractions. Here, we quantified habitat niche width, species abundance, and physiological performance of range-extending coral reef fishes and co-existing local temperate coastal fishes along a 2,000-km latitudinal gradient from tropical to temperate reefs in a global warming hotspot. We then assessed the dietary and behavioural niches and establishment potential of the same species to understand whether ecological generalism facilitates successful range-extension of coral reef fishes. At its temperate cold-range edge, one coral reef species (<i>Abudefduf vaigiensis</i>) that increased their habitat, dietary and behavioural niches collectively showed stronger establishment, but experienced decreased physiological performance (increased oxidative stress) compared to its core tropical range. Contrastingly, the three other coral reef species that showed unmodified habitat, dietary or behavioural niches showed lower establishment potential in their novel ranges. One temperate species showed decreased abundance, habitat niche width, and physiological performance at their warm-trailing edge compared to their core temperate range, while the other two temperate species showed contrasting responses. We conclude that ecological generalists might be more successful than ecological specialists during the initial stages of climate change, with increasing future warming further strengthening this pattern by physiologically benefitting tropical generalists but disadvantaging temperate specialists.
DOI: 10.25909/24004665
title: PrimePlus_PACKEDPED

description: This repository contains PACKEDPED genotype files generated in the study "Allelic bias when performing in-solution enrichment of ancient human DNA" Davidson et al. 2023.Disclaimer:All data was generated using the Daicel Arbor Biosciences Human Affinities Prime Plus (1.2 million SNPs) enrichment kit. The resulting data contains strong assay biases and we strongly recommend against using this data for any population genomics analysis. The data are provided for the purposes of replication only##Nomenclature.PP.2rnd = 2 rounds of enrichment with Prime Plus (this is the standard protocol).PP.1rndA or .PP1rndB = experiments with protocol variations and 1 round of Prime Plus enrichment (see manuscript for details)
DOI: 10.25909/24004665.v1
title: PrimePlus_PACKEDPED

description: This repository contains PACKEDPED genotype files generated in the study "Allelic bias when performing in-solution enrichment of ancient human DNA" Davidson et al. 2023.Disclaimer:All data was generated using the Daicel Arbor Biosciences Human Affinities Prime Plus (1.2 million SNPs) enrichment kit. The resulting data contains strong assay biases and we strongly recommend against using this data for any population genomics analysis. The data are provided for the purposes of replication only##Nomenclature.PP.2rnd = 2 rounds of enrichment with Prime Plus (this is the standard protocol).PP.1rndA or .PP1rndB = experiments with protocol variations and 1 round of Prime Plus enrichment (see manuscript for details)
DOI: 10.25909/24079431
title: Data set and pre-registration for study 'Parenting and objectification'

description: The data reflects measures of objectification of others, self-objectification, and measueres of perceptions of parental objectifcation of others and parental care
DOI: 10.25909/24079431.v1
title: Data set and pre-registration for study 'Parenting and objectification'

description: The data reflects measures of objectification of others, self-objectification, and measueres of perceptions of parental objectifcation of others and parental care
DOI: 10.25909/24085896
title: Directional Dark-Field Imaging Data of Magnet Assisted Airway Treatment Delivery

description: Image sequences taken using a single-grid imaging system at the BL20XU beamline of the SPring-8 synchrotron. Showing the delivery of magnetic nanoparticles into the trachea of a live rat for the purpose of developing a magnetically guided gene therapy delivery system.<br>The images can be analysed with the UMPA Directional Dark-Field code available at: github.com/optimato/UMPA_directional_dark_field DOI for code is: doi.org/10.5281/zenodo.6981376
DOI: 10.25909/24085896.v1
title: Directional Dark-Field Imaging Data of Magnet Assisted Airway Treatment Delivery

description: Image sequences taken using a single-grid imaging system at the BL20XU beamline of the SPring-8 synchrotron. Showing the delivery of magnetic nanoparticles into the trachea of a live rat for the purpose of developing a magnetically guided gene therapy delivery system.<br>The images can be analysed with the UMPA Directional Dark-Field code available at: github.com/optimato/UMPA_directional_dark_field DOI for code is: doi.org/10.5281/zenodo.6981376
DOI: 10.25909/24085950
title: OzBarley_test

description: The OzBarley platform is a genotype-to-phenotype database designed to empower breeders and researchers.
DOI: 10.25909/24085950.v1
title: OzBarley_test

description: The OzBarley platform is a genotype-to-phenotype database designed to empower breeders and researchers.
DOI: 10.25909/24099384
title: Alternative temperature conditions for screening late maturity α-amylase in wheat

description: Data generated in the study 'Alternative temperature conditions for screening late maturity α-amylase in wheat'.
DOI: 10.25909/24099384.v1
title: Alternative temperature conditions for screening late maturity α-amylase in wheat

description: Data generated in the study 'Alternative temperature conditions for screening late maturity α-amylase in wheat'.