cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6skw5d
title: Occurrence Download

description: A dataset containing 314616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.29706 5.72374,-71.59087 5.72374,-71.59087 10.97187,-74.29706 10.97187,-74.29706 5.72374))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 314616 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241831-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.at7pg8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenocallis cordifolia Micheli"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250028-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtymyr
title: Occurrence Download

description: A dataset containing 30822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen, Occurrence evidence, Material sample, Material citation)",
 "Geometry POLYGON((-64.32953 -42.92308,20.52378 -42.77622,3.03667 4.884,-9.45746 5.43929,-13.15905 8.37824,-15.92539 11.56035,-17.41346 14.68531,-16.97438 21.45426,-16.36315 23.89918,-10.38506 28.38912,-9.02837 32.66016,-5.51271 37.94147,-8.39765 37.30038,-7.90523 42.56787,-0.68796 42.56787,-0.3271 45.81564,-5.38169 58.48001,20.52378 63.77301,-76.28649 63.77301,-58.5775 52.98054,-69.4909 43.82358,-82.57468 32.80592,-72.02647 12.79435,-61.8416 9.13072,-52.31619 4.07493,-48.87238 -1.20069,-35.58929 -6.14458,-40.4643 -19.7743,-47.67569 -24.54313,-57.80829 -37.35437,-64.32953 -42.92308))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "WaterBody is one of (Atlanic ; Atlantic Ocean, Atlantic ; Atlantic Ocean ; Océan Atlantique, Atlantic, North Atlantic)",
 "Year 2013-2023"
 ]
}

 The dataset includes 30822 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010408-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zn5frm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hetaeria baeuerlenii Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241845-230224095556074/datasets/export for details.
DOI: 10.15468/dl.shfzwv
title: Occurrence Download

description: A dataset containing 31539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium glaucinum Jord."
 ]
}

 The dataset includes 31539 records from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246272-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bx33x2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenocallis eucharidifolia Baker"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250033-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urajh8
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.01255 33.11737,-79.95334 33.11737,-79.95334 33.14872,-80.01255 33.14872,-80.01255 33.11737))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 265 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241854-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bymafs
title: Occurrence Download

description: A dataset containing 20476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is d7475b3a-52a4-4fa7-8136-5311900cdfcd",
 "PublishingOrg is 90fd6680-349f-11d8-aa2d-b8a03c50a862"
 ]
}

 The dataset includes 20476 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010380-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcadmm
title: Occurrence Download

description: A dataset containing 13677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Miscanthus sinensis Andersson)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13677 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069594-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ejxqy
title: Occurrence Download

description: A dataset containing 8078 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium caesium (Fr.) Fr."
 ]
}

 The dataset includes 8078 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246265-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639392_d2
title: Additional file 1: of Perceived barriers to success for resident physicians interested in immigrant and refugee health

description: Title of data: Raw Data Set. Description: Full raw data set via excel spreadsheet. (XLSX 93Â kb)
DOI: 10.6084/m9.figshare.c.3639398_d1
title: MOESM3 of Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs

description: Additional file 3. k-s.r. Source code in R for estimating Kolmogorov-Smirnov inbreeding coefficients.
DOI: 10.6084/m9.figshare.c.3639398_d3
title: MOESM5 of Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs

description: Additional file 5. Expon.r. Source code in R for estimating exponential inbreeding coefficients.
DOI: 10.6084/m9.figshare.c.3639398_d4
title: MOESM2 of Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs

description: Additional file 2. Inbreeding.example. This file contains a small dataset with information on ROH length for two individuals on chromosome 1. The variables are: nchro: number of chromosome; ind: number of individuals; gr: group; po1: initial chromosomal position; po2: final chromosomal position; roh: ROH length in number of homozygous SNPs in the segment.
DOI: 10.6084/m9.figshare.c.3639398_d5
title: MOESM4 of Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs

description: Additional file 4. Quantile.r. Source code in R for estimating quantile inbreeding coefficients.
DOI: 10.6084/m9.figshare.c.3639401_d1
title: Additional file 3: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Lipid composition of cultured PBD-ZSD patient and control-derived cells. A complete list of all biochemical measurements pertinent to the lipid composition of the cells discussed herein is provided. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3639461_d2
title: Additional file 1: of Observational, prospective, multicentre study to evaluate the effects of counselling on the choice of combined hormonal contraceptives in Italyâ  the ECOS (Educational COunselling effectS) study

description: Partecipating centers. The file includes the complete list of the participating centers, together with the name of the principal investigator. (XLS 100 kb)
DOI: 10.6084/m9.figshare.c.3639467_d1
title: Additional file 9: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S5 presenting the top pathways for MCF7 versus HT-29. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3639467_d2
title: Additional file 4: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S4 presenting genes differentially expressed between positive and negative tumors. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3639467_d5
title: Additional file 3: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S3 presenting the top enriched pathways in upregulated genes in sorted MSCs from MCF7 and BT-20 co-cultures. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3639467_d9
title: Additional file 2: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S2 presenting upregulated genes in sorted MSCs from MCF7 and BT-20 co-cultures. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3639479_d1
title: Additinal file 3

description: Generated edge list. The CyNetworkBMA output consisting of a list of edges and their probabilities that represent a gene network generated from the example DREAM4 input data set (available as Additional file 2). This output file corresponding to Additional file 3 is a text file consisting of three columns: parent, child, posterior probabilities. Each line represents a directed edge from parent node to child node with the posterior probability in the third column. We provide this file so that the user can verify the examples shown in this manuscript. (CSV 345 kb)
DOI: 10.15468/dl.m4e2b4
title: Occurrence Download

description: A dataset containing 41056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "Year is 1986"
 ]
}

 The dataset includes 41056 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp65eb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Venezuela (Bolivarian Republic of)",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639506_d3
title: Additional file 3: of Motif signatures in stretch enhancers are enriched for disease-associated genetic variants

description: CentriMo scans of DHS sequences with database motifs. Zip archive of text outputs from CentriMo scans on DHS sequences within SEs or TEs using database motifs. File names specify the cell type and enhancer class. Can be downloaded at http://fusion.nhgri.nih.gov/files/se-motifs/AdditionalFile3.zip .
DOI: 10.6084/m9.figshare.c.3639506_d2
title: Additional file 4: of Motif signatures in stretch enhancers are enriched for disease-associated genetic variants

description: De novo motif disocvery results. Zip archive of de novo motif discovery results. Discovered motifs are condensed in MEME Minimal Motif Format. TOMTOM output HTML files documenting the comparison of the discovered motifs to known motifs and CentriMo output text files detailing the enrichment of the discovered motifs in SE or TE DHS sequences are also included. File names indicate the type of sequences used for the motif discovery, including the method of footprinting. Can be downloaded at http://fusion.nhgri.nih.gov/files/se-motifs/AdditionalFile4.zip .
DOI: 10.6084/m9.figshare.c.3639506_d4
title: Additional file 1: of Motif signatures in stretch enhancers are enriched for disease-associated genetic variants

description: Table S1. Staitistics of enhancers.
DOI: 10.6084/m9.figshare.c.3606647_d6
title: Additional file 5: of Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

description: The alignment used for the calculations of the double-domain sequences tree. (FASTA 53Â kb)
DOI: 10.6084/m9.figshare.c.3606647_d7
title: Additional file 1: of Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

description: The alignment of GmrSD family members. (FASTA 6123Â kb)
DOI: 10.6084/m9.figshare.c.3606647_d9
title: Additional file 3: of Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

description: The alignment of GmrS domain sequences used for tree calculations. (FASTA 38Â kb)
DOI: 10.6084/m9.figshare.c.3606647_d8
title: Additional file 8: of Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

description: Results of the genomic context analysis. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.c.3639518_d1
title: Additional file 1: of Association between genotypic diversity and biofilm production in group B Streptococcus

description: Strains examined in this study. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.28027868
title: Chapman Richards curve parameters and associated standard error.

description: These parameters are key parameters for calculating Chapman Richards growth curves, representing above ground carbon accumulation for different forest ages, along with the standard error for each parameter. Please see the ReadMe document for key information on units, scale factors, and appropriate use of these data.
DOI: 10.6084/m9.figshare.28027868.v1
title: Chapman Richards curve parameters and associated standard error.

description: These parameters are key parameters for calculating Chapman Richards growth curves, representing above ground carbon accumulation for different forest ages, along with the standard error for each parameter. Please see the ReadMe document for key information on units, scale factors, and appropriate use of these data.
DOI: 10.15468/dl.myztxx
title: Occurrence Download

description: A dataset containing 4500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Granatellus venustus Bonaparte, 1850"
 ]
}

 The dataset includes 4500 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033900-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639554_d4
title: Additional file 5: of 
                     De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

description: Expression statistics and annotation information for each contig. Contig name, size (in bp), raw number of reads for each library (GA1, GA2, RA1, RA2), GO annotation (first line of the BLAST2GO output), blastx on nr (accession of the first hit, percent of identity, description), OMCL clustering in the pairwise comparison with the pea aphid genome (number of genes in the gene family, number of species, number of pea aphid genes and number of phylloxera genes). (ODS 4225 kb)
DOI: 10.6084/m9.figshare.c.3639554_d5
title: Additional file 1: of 
                     De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

description: Primer sequences used for qRT-PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3639569_d1
title: Additional file 1: of SAMSA: a comprehensive metatranscriptome analysis pipeline

description: Differentially expressed transcripts when comparing between wild-type and Tyk2-deficient mice in DSS-induced colitis. This is a tab-delimited file, with all entries included, sorted by ascending multiple hypothesis-adjusted p value. (XLS 3680 kb)
DOI: 10.6084/m9.figshare.c.3639581_d3
title: Additional file 1: of Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7

description: Cq values of 180 pri-miRNAs in leaves and roots measured using an RT-qPCR platform. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3639701_d2
title: Additional file 2: of 
                     TP53 gene mutation analysis in chronic lymphocytic leukemia by nanopore MinION sequencing

description: Reformatted file of â  gene variation IARC TP53 databaseâ   to use in Galaxy workflow for variants annotation. (TXT 1603 kb)
DOI: 10.6084/m9.figshare.c.3639701_d3
title: Additional file 1: Table S1. of 
                     TP53 gene mutation analysis in chronic lymphocytic leukemia by nanopore MinION sequencing

description: Error analysis results on raw and corrected reads. (XLSX 11 kb)
DOI: 10.15468/dl.ccpdpa
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes camptorhynchus (Thomson, 1869)",
 "Country is New Zealand",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033902-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nh3e46
title: Occurrence Download

description: A dataset containing 35229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "Year is 1987"
 ]
}

 The dataset includes 35229 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033901-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14455039
title: liparis_bathyarcticus_spades_01.fasta.gz
DOI: 10.5281/zenodo.14455040
title: liparis_bathyarcticus_spades_01.fasta.gz
DOI: 10.6084/m9.figshare.c.3639743_d1
title: Additional file 8: of Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes

description: Sequence motifs identified in regulatory regions of the genes differentially expressed in the rosR mutant and the wild-type strain, which show a significant similarity to the RosR-box sequence. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3639743_d9
title: Additional file 3: of Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes

description: A list of coding sequences in R. leguminosarum bv. trifolii, for which differences in the expression levels between the Rt2472 rosR mutant (mut) and the wild-type strain Rt24.2 (wt) were established (log 2 fold change &gt;2), with classification of the sequences into COG groups and putative functions of the encoded proteins. (XLSX 148 kb)
DOI: 10.6084/m9.figshare.c.3639770_d2
title: Additional file 2: of Overexpression of Homer1a in the basal and lateral amygdala impairs fear conditioning and induces an autism-like social impairment

description: Table of microarray data from VPA exposed rats compared to saline exposed control animals . Gene lists were created based on the criteria that the gene must exhibit an average fold difference of 1.5 fold or greater in pair wise comparisons between VPA and saline amygdala samples with a t-test p-value of pâ
DOI: 10.6084/m9.figshare.c.3639785_d4
title: Additional file 5: Table S5. of The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine

description: All unmatched mutation calls (due to size, due to size, see Additional file 4: Table S4 for matched mutation calls). (XLSX 11186 kb)
DOI: 10.15468/dl.usc946
title: Occurrence Download

description: A dataset containing 15061383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 15061383 records from 460 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033875-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14455060
title: careproctus_comus_spades_01.fasta.gz
DOI: 10.5281/zenodo.14455061
title: careproctus_comus_spades_01.fasta.gz
DOI: 10.6084/m9.figshare.c.3639863_d7
title: Additional file 8: of Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure

description: List of primers used in real-time RT-PCR analysis for confirmation of differential expression of selected genes identified by the microarray analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3639878_d2
title: Additional file 3: of Integration of metabolomics, lipidomics and clinical data using a machine learning method

description: List of lipidomics, metabolomics and clinical chemistry data set. (XLSX 897 kb)
DOI: 10.6084/m9.figshare.c.3639878_d5
title: Additional file 4: of Integration of metabolomics, lipidomics and clinical data using a machine learning method

description: The R- Scripts used in the analysis. (TXT 4 kb)
DOI: 10.15468/dl.5qhtny
title: Occurrence Download

description: A dataset containing 2776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrilus planipennis Fairmaire, 1888",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 2776 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033903-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639896_d1
title: Additional file 1: of Bracing in adult with scoliosis: experience in diagnosis and classification from a 15 year prospective study of 739 patients

description: Excel spreadsheet: Spreadsheet used for the diagnostic comparison of average according to the age and angulation. (XLSX 80 kb)
DOI: 10.6084/m9.figshare.c.3639950_d1
title: Additional file 3: of Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways

description: KEGG annotations and pathway maps. (GZ 23266 kb)
DOI: 10.6084/m9.figshare.c.3639950_d2
title: Additional file 2: of Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways

description: Annotations of transcriptome. (GZ 1986 kb)
DOI: 10.6084/m9.figshare.c.3639950_d3
title: Additional file 4: of Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways

description: Sequences of all genes referred to in text. (XLSX 130 kb)