cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1p70j
title: Data from: Flexible mate choice when mates are rare and time is short

description: Female mate choice is much more dynamic than we once thought. Mating
 decisions depend on both intrinsic and extrinsic factors, and these two
 may interact with one another. In this study, we investigate how responses
 to the social mating environment (extrinsic) change as individuals age
 (intrinsic). We first conducted a field survey to examine the extent of
 natural variation in mate availability in a population of threespine
 sticklebacks. We then manipulated the sex ratio in the laboratory to
 determine the impact of variation in mate availability on sexual
 signaling, competition, and mating decisions that are made throughout
 life. Field surveys revealed within season heterogeneity in mate
 availability across breeding sites, providing evidence for the variation
 necessary for the evolution of plastic preferences. In our laboratory
 study, males from both female-biased and male-biased treatments invested
 most in sexual signaling late in life, although they competed most early
 in life. Females became more responsive to courtship over time, and those
 experiencing female-biased, but not male-biased sex ratios, relaxed their
 mating decisions late in life. Our results suggest that social experience
 and age interact to affect sexual signaling and female mating decisions.
 Flexible behavior could mediate the potentially negative effects of
 environmental change on population viability, allowing reproductive
 success even when preferred mates are rare.
description: Mate availability and
 mating decisions in the field and labIn this excel file you
 will find four tabs summarizing 1) field data on the threespine
 stickleback OSR in Paxton Lake early, mid, and late in the breeding season
 (2007), 2) lab generated data on the sexual signals of male sticklebacks
 housed under male-biased or female-biased conditions throughout a breeding
 season, 3) lab generated data on the male competition behaviors observed
 in male-biased and female-biased treatment tanks throughout a breeding
 season, and 4) lab generated female preference and responsiveness data for
 sticklebacks housed under male-biased or female-biased conditions
 throughout a breeding season.Paxton field OSR for
 Dryad.xlsx
DOI: 10.15468/dl.h324vp
title: Occurrence Download

description: A dataset containing 2881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.18.5_1",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 2881 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000995-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0h190
title: Data from: Relatedness and age reduce aggressive male interactions over mating in domestic fowl

description: Altruistic behaviour represents a fundamental challenge in evolutionary
 biology. It is often best understood through kin selection, where
 favourable behaviour is directed towards relatives. Kin selection can take
 place when males cooperate to enhance the reproductive success of
 relatives. Here, we focus on reduced male–male competition over mating as
 a case of cooperation, by examining male tolerance of matings by related
 and unrelated competitors. A suitable model for exploring whether
 relatedness affects male–male interactions over mating is the domestic
 fowl, Gallus gallus domesticus. In this species, males form social
 hierarchies and dominant males commonly interrupt subdominant males’
 copulation attempts. We investigated whether dominant male fowl
 differentially direct aggressive interactions towards unrelated and
 related subordinate males during mating attempts. Dominant male fowl were
 found to interrupt mating attempts of male relatives less often than those
 of unrelated males. We further tested whether male age mediates the
 magnitude of kin tolerance behaviour. However, we found no support for
 this as both young and old dominant males were less likely to interrupt
 related, compared to unrelated, subdominant males’ copulations during
 male–male interactions. Our results, consistent with kin selection,
 provide a rare experimental demonstration of relatedness relaxing
 male–male competition over mating.
description: Rosher_et_al_DryadExcel file with data on mating behaviour in domestic fowl, used for analyses in Rosher et al, to be published in Behavioral Ecology 2017
DOI: 10.5281/zenodo.18383285
title: THE PATH OF PUBLISHING FOLKLORE HERITAGE: A CASE STUDY OF THE KARAKALPAK EPIC "GOROGLY"

description: This article examines the collection and publication of the Karakalpak version of the epic Gorogly. It highlights the history of recording the epic, the processes of preparing it for print, and its subsequent scholarly study. The paper emphasizes the significance of the Karakalpak variant within the broader Turkic epic tradition and its role as a cultural and historical heritage.
DOI: 10.5281/zenodo.18383286
title: THE PATH OF PUBLISHING FOLKLORE HERITAGE: A CASE STUDY OF THE KARAKALPAK EPIC "GOROGLY"

description: This article examines the collection and publication of the Karakalpak version of the epic Gorogly. It highlights the history of recording the epic, the processes of preparing it for print, and its subsequent scholarly study. The paper emphasizes the significance of the Karakalpak variant within the broader Turkic epic tradition and its role as a cultural and historical heritage.
DOI: 10.5061/dryad.3jm4q
title: Data from: Milkweed butterfly resistance to plant toxins is linked to sequestration, not coping with a toxic diet

description: Insect resistance to plant toxins is widely assumed to have evolved in
 response to using defended plants as a dietary resource. We tested this
 hypothesis in the milkweed butterflies (Danaini) which have progressively
 evolved higher levels of resistance to cardenolide toxins based on amino
 acid substitutions of their cellular sodium-potassium pump
 (Na+/K+-ATPase). Using chemical, physiological, and caterpillar growth
 assays on diverse milkweeds (Asclepias spp.) and isolated cardenolides, we
 show that resistant Na+/K+-ATPases are not necessary to cope with dietary
 cardenolides. In contrast, sequestration of cardenolides in the body (as a
 defense against predators) is associated with the three levels of
 Na+/K+-ATPase resistance. To estimate the potential physiological burden
 of cardenolide sequestration without Na+/K+-ATPase adaptations, we applied
 haemolymph of sequestering species on isolated Na+/K+-ATPase of
 sequestering and nonsequestering species. Haemolymph cardenolides
 dramatically impair non-adapted Na+/K+-ATPase, but had systematically
 reduced effects on Na+/K+-ATPase of sequestering species. Our data
 indicate that major adaptations to plant toxins may be evolutionarily
 linked to sequestration, and may not necessarily be a means to eat toxic
 plants. Na+/K+-ATPase adaptations thus were a potential mechanism through
 which predators spurred the coevolutionary arms race between plants and
 insects.
description: dryad_Petschenka&Agrawal 2015Gravimetric data, HPLC cardenolide determinations, Na+/K+-ATPase activity data, caterpillar injections. The excel file contains seven sheets listing experimental data and a short description where necessary.
DOI: 10.5061/dryad.7k130
title: Data from: Fitness trade-offs explain low levels of persister cells in the opportunistic pathogen Pseudomonas aeruginosa

description: Microbial populations often contain a fraction of slow-growing persister
 cells that withstand antibiotics and other stress factors. Current
 theoretical models predict that persistence levels should reflect a stable
 state in which the survival advantage of persisters under adverse
 conditions is balanced with the direct growth cost impaired under
 favourable growth conditions, caused by the nonreplication of persister
 cells. Based on this direct growth cost alone, however, it remains
 challenging to explain the observed low levels of persistence
 (&lt;&lt;1%) seen in the populations of many species. Here, we
 present data from the opportunistic human pathogen Pseudomonas aeruginosa
 that can explain this discrepancy by revealing various previously unknown
 costs of persistence. In particular, we show that in the absence of
 antibiotic stress, increased persistence is traded off against a
 lengthened lag phase as well as a reduced survival ability during
 stationary phase. We argue that these pleiotropic costs contribute to the
 very low proportions of persister cells observed among natural P.
 aeruginosa isolates (3 × 10−8–3 × 10−4) and that they can explain why
 strains with higher proportions of persister cells lose out very quickly
 in competition assays under favourable growth conditions, despite a
 negligible difference in maximal growth rate. We discuss how incorporating
 these trade-offs could lead to models that can better explain the
 evolution of persistence in nature and facilitate the rational design of
 alternative therapeutic strategies for treating infectious diseases.
description: All primary data for
 Stepanyan et al (2015) Mol EcolZip archive containing
 all primary data for Stepanyan et al (2015) Mol Ecol. Relates to Figure 1,
 Figure 2, Figure 3, Figure 4, Figure S1, Figure S2 and Figure
 S5.Stepanyan_2015_Mol-Ecol.zip
DOI: 10.13140/rg.2.2.34037.90082
title: Palm Oil: Economic, Nutritional Properties, Health Implications, and Industrial Applications
DOI: 10.5061/dryad.tv138
title: Data from: Drug approval status and recommendations for listing on public formularies: a Canadian cohort analysis

description: Objectives Investigate if the recommendations by the Common Drug Review
 (CDR) and the pan-Canadian Oncology Drug Review (pCODR) to provincial,
 territorial and federal drug plans about whether to list non-oncology and
 oncology drug-indication combinations on their formularies are associated
 with whether the drug-indication combination was approved via the standard
 evidence pathway or the Notice of Compliance with conditions (NOC/c –
 limited evidence) pathway. Design Cohort study. Data sources Web sites of
 the CDR and pCODR up to the end of March 31, 2017; journal articles
 evaluating drugs approved through the NOC/c pathway, the Notice of
 Compliance database, the Notice of Compliance with conditions web site and
 the Summary Basis of Decision website. Interventions Recommendations by
 the CDR and pCODR. Primary and secondary outcome measures Analysis of the
 percent of drugs receiving positive listing recommendations from CDR and
 pCODR depending on the pathway used to approve the drug. Results There
 were 310 recommendations for drug-indication combinations from the CDR and
 79 from the pCODR. There was a statistically significant difference in the
 number of drug-indication combinations that received a list versus do not
 list recommendation from the CDR for those approved through the standard
 pathway compared to those approved through the NOC/c pathway (p = 0.0407).
 A similar analysis for recommendations from the pCODR was not
 statistically significant. Conclusion For non-oncology drug-indication
 combinations, the type of review appears to influence the recommendation
 regarding listing on public formularies. This difference may reflect the
 level of evidence about the efficacy and safety of the drug-indication at
 the time the recommendation was made.
description: Data used in analysis of
 Common Drug Review and pan-Canadian Oncology Review
 recommendationsList of indications,
 funding recommendations and drug review pathways for all drugs considered
 in this study.Additional File
 1.xlsx
DOI: 10.5061/dryad.7h76t8b
title: Data from: Predation and nutrients drive population declines in breeding waders

description: Allee effects are defined as a decline in per capita fitness at low
 population density. We hypothesized that predation reduces population size
 of breeding waders and thereby the efficiency of predator deterrence,
 while total nitrogen through its effects on primary and secondary
 productivity increases population size. Therefore, nest predation could
 have negative consequences for population size because nest failure
 generally results in breeding dispersal and hence reduced local population
 density. To test these predictions we recorded nest predation in five
 species of waders for 4745 nests during 1987-2015 at the nature reserve
 Tipperne, Denmark. Predation rates were generally negatively related to
 conspecific and heterospecific population density, but positively related
 to overall population density of the entire wader community. Nest
 predation and population density were related to ground water level,
 management (grazing and mowing) and nutrients. High nest predation with a
 time lag of one year resulted in low overall breeding population density,
 while high nutrient levels resulted in higher population density. These
 two factors accounted for 86% of the variance in population size,
 presumably due to effects of nest predation on emigration, while nutrient
 levels increased the level of vegetation cover and the abundance of food
 in the surrounding brackish water. These findings are consistent with the
 hypothesis that predation may reduce population density through negative
 density-dependence, while total nitrogen at adjacent shallow water may
 increase population size. Nest predation rates were reduced by high ground
 water level in March, grazing by cattle and mowing that affected access to
 and susceptibility of nests to predators. These effects can be managed to
 benefit breeding waders.
description: Table S1.Wader
 DataRaw data
 1987-2015Table S2.Tempotral
 trendsTemporal trends in
 variablesTable S3.GLS
 resultsGLS
 results
DOI: 10.5061/dryad.6t3dn
title: Data from: Paternity analysis of wild-caught females shows that sperm package size and placement influence fertilization success in the bushcricket Pholidoptera griseoaptera

description: In species where females store sperm, males may try to influence paternity
 by the strategic placement of sperm within the female's sperm storage
 organ. Sperm may be mixed or layered in storage organs, and this can
 influence sperm use beyond a ‘fair raffle’. In some insects, sperm from
 different matings is packaged into discrete packets (spermatodoses), which
 retain their integrity in the female's sperm storage organ
 (spermatheca), but little is known about how these may influence patterns
 of sperm use under natural mating conditions in wild populations. We
 examined the effect of the size and position of spermatodoses within the
 spermatheca and number of competing ejaculates on sperm use in female dark
 bushcrickets (Pholidoptera griseoaptera) that had mated under
 unmanipulated field conditions. Females were collected near the end of the
 mating season, and seven hypervariable microsatellite loci were used to
 assign paternity of eggs laid in the laboratory. Females contained a
 median of three spermatodoses (range 1–6), and only six of the 36 females
 contained more than one spermatodose of the same genotype. Both the size
 and relative placement of the spermatodoses within the spermatheca had a
 significant effect on paternity, with a bias against smaller spermatodoses
 and those further from the single entrance/exit of the spermatheca. A
 higher number of competing males reduced the chances of siring offspring
 for each male. Hence, both spermatodose size and relative placement in the
 spermatheca influence paternity success.
description: genotype and phenotype
 informationgenotypes_and_pheno_info.csvfemale_pheno_infoFemale Phenotype information. Column names: female_ID = female's ID, total_eggs_laid = number of eggs laid by a female, Pronotum_length_mm = female Pronotum length (mm), N_spdoses = number of spermatodoses found in a female
DOI: 10.5061/dryad.c3h4v
title: Data from: Molecular data and distribution dynamics indicate a recent and incomplete separation of manakins species of the genus Antilophia (Aves: Pipridae) in response to Holocene climate change

description: To determine a hypothetical scenario that accounts for the diversification
 of the two species of the genus Antilophia, we conducted multilocus
 molecular comparisons and species distribution modeling for the two taxa,
 which have distinct male plumage coloration patterns and allopatric
 geographic distributions, despite the high degree of genetic similarity
 indicated by recent studies. Three mitochondrial and three nuclear
 fragments were analyzed. The results indicate clear differences in the
 genetic diversity of the two species, but with ample sharing of haplotypes
 in all the markers analyzed, reflecting the absence of reciprocal
 monophyly, presumably due to the relatively recent and still incomplete
 separation of the two species. The paleoclimatic distribution models,
 together with the observed genetic profile indicate a recent process of
 divergence by geographic isolation in the ancestral populations of the two
 species. This scenario coincides with the recent climatic events of the
 South American dry diagonal, which involves the gallery forests of the
 Cerrado biome and the cloud forest enclaves of the seasonal tropical dry
 forest of the Caatinga between the late Pleistocene and the mid Holocene.
description: Coordinates_galeata_bokermanniTo determine occurrence points for the study species, we used the data sources available on the website of the Global Biodiversity Information Facility (GBIF; http://www.gbif.org/). Additional data came from observational data entered into eBird (http://http://ebird.org) and from Xeno-Canto platform, which compiles bird sounds data (http://xeno-canto.org).
DOI: 10.5061/dryad.6pn119g
title: Data from: High species richness and lineage diversity of reef corals in the mesophotic zone

description: Coral reefs are increasingly threatened by thermal bleaching and tropical
 storm events associated with rising sea surface temperatures. Deeper
 habitats offer some protection from these impacts and may safeguard
 reef-coral biodiversity, but their faunas are largely undescribed for the
 Indo-Pacific. Here, we show high species richness of scleractinian corals
 in mesophotic habitats (30-125 m) for the northern Great Barrier Reef
 region that greatly exceeds previous records for mesophotic habitats
 globally. Overall, 45% of shallow reef species (≤ 30 m), 78% of genera and
 all families extended below 30 m depth, with 13% of species, 41% of genera
 and 78% of families extending below 45 m. Maximum depth of occurrence
 showed a weak relationship to phylogeny, but a strong correlation with
 maximum latitudinal extent. Species recorded in the mesophotic had a
 significantly greater than expected probability of also occurring in
 shaded microhabitats and at higher latitudes, consistent with light as a
 common limiting factor. The findings suggest an important role for deeper
 habitats, particularly depths 30-45 m, in preserving evolutionary lineages
 of Indo-Pacific corals. Deeper reef areas are clearly more diverse than
 previously acknowledged and therefore deserve full consideration in our
 efforts to protect the world’s coral reef biodiversity.
description: Specimens
 collectedProvides depth, location
 and museum registration numbers of specimens collected during our
 studyMuir
 DataFile Final.xlsx
DOI: 10.5061/dryad.7nj7n
title: Data from: State-dependent cooperation in burying beetles: parents adjust their contribution towards care based on both their own and their partner’s size

description: Handicapping experiments on species with biparental care show that a focal
 parent increases its contribution when its partner is handicapped. Such
 results are interpreted as evidence for negotiation, whereby each parent
 adjusts its amount of care to that of its partner. However, it is
 currently unclear whether the focal parent responds to a change in its
 handicapped partner's behaviour or state. To address this gap, we
 conducted an experiment on the burying beetle Nicrophorus vespilloides
 where we first experimentally generated different-sized male and female
 parents by varying the duration of larval development. We then used a 2×2
 factorial design in which a small or large male was paired with a small or
 large female. Small females provided less direct care (food provisioning
 and interactions with larvae) than large females, and males and females
 provided less direct care when paired with a small partner. Thus, the
 focal parent adjusted its contribution towards care based on both its own
 state and that of its partner. There was evidence for negotiation between
 the two parents as the focal parent adjusted its contribution based on the
 amount of care by its partner. However, there was no evidence that
 negotiation accounted for how the focal parent responded to its
 partner's size. Our results have important implications for our
 understanding of biparental cooperation as they show that each parent not
 only adjusts its contribution based on the amount of care provided by its
 partner but also based on its own state and its partner's state.
description: PilakoutaRichardsonSmisethJEB2015.csvRaw data on biparental cooperation in the burying beetle Nicrophorus vespilloides. The data file contains information on contributions towards parental care by male and female parents and information on the body size of male and female parents.
DOI: 10.5061/dryad.hm926
title: Data from: Signatures of selection in the three-spined stickleback along a small scale brackish water - freshwater transition zone

description: Local adaptation is often obvious when gene flow is impeded, such as
 observed at large spatial scales and across strong ecological contrasts.
 However, it becomes less certain at small scales such as between adjacent
 populations or across weak ecological contrasts, when gene flow is strong.
 While studies on genomic adaptation tend to focus on the former, less is
 known about the genomic targets of natural selection in the latter
 situation. In this study, we investigate genomic adaptation in populations
 of the three-spined stickleback Gasterosteus aculeatus L. across a
 small-scale ecological transition with salinities ranging from brackish to
 fresh. Adaptation to salinity has been repeatedly demonstrated in this
 species. A genome scan based on 87 microsatellite markers revealed only
 few signatures of selection, likely owing to the constraints that
 homogenizing gene flow puts on adaptive divergence. However, the detected
 loci appear repeatedly as targets of selection in similar studies of
 genomic adaptation in the three-spined stickleback. We conclude that the
 signature of genomic selection in the face of strong gene flow is weak,
 yet detectable. We argue that the range of studies of genomic divergence
 should be extended to include more systems characterized by limited
 geographical and ecological isolation, which is often a realistic setting
 in nature.
description: Multilocus genotypes of
 three-spined stickleback, Belgian-Dutch lowlandsGenotypes for 87 loci in
 four populations (L01, L02, L12, U01) of three-spined stickleback. The
 first and second column identify the population and the fish ID,
 respectively. Subsequent columns contain diploid genotype data (3+3
 digits). Missing values are entered as 000000.Konijnendijk et
 al-EE-2015.xlsx