cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1230074.v1
title: Characteristics of White Aster in a Powerline Corridor

description: This experiment took place in a powerline corridor functioning as an urban greenway (Figure 5), which is an open field north of Steeles Avenue West (43.779291, -79.504367), Concord, ON L4K 3C8, across from York University. This field is located along a busy roadside, and extends behind buildings along the street. Sampling was done in the powerline corridor directly behind the buildings which are separated from the field by a fence. We used a shallow drainage ditch with steep sides as our area of focus, which is located parallel to a fence. This drainage ditch is a main source of water in the immediate area, since most of the field is open and flat on one side, and has buildings on the other side. Therefore most runoff in this area will accumulate in the drainage ditch. Data collection occurred on 3 days (October 2nd, 9th and 16th, 2014), from 2:30 pm to 5:30 pm. The weather on the first day was 16°C and sunny, on the second day it was 13°C and partly cloudy, and the last day was 12°C and it rained. Sets of quadrats (1m x 1m) were taken along the edge of the drainage ditch at 1.5 meters apart to allow for enough replicates, and they were taken at 3 different distances along a transect perpendicular to the ditch that extended away from the road and buildings: the first quadrat was 0 meters (at the very edge of the ditch), the second was 10 meters from the ditch, and the third 20 meters from the ditch. Plants were only considered to be in the quadrat if their roots resided within its perimeter. This process was repeated until 7 sets, n = 21 quadrats were completed. For this experiment, we looked at how the drainage ditch is an important source of water for plants in the powerline corridor. This was done by measuring different variables at different distances from the ditch, focusing specifically on the white aster plant. The factors measured in each quadrat were height of the white aster plants, density, number of flowers per plant and species richness. The height of plants was taken using measuring tape from the soil to the top of the plant. The density was visually evaluated, and the percentage of white aster plants in the quadrat was estimated. The number of flowers per plant was counted on each stem individually, and only open flowers at the time of sampling were counted. In the last 2 weeks the majority of flowers closed and some stems fell off, so all flowers were counted. Species richness was counted by observing morphology and using a plant guide book to identify species. The data collected was analyzed using a 1 way ANOVA test with α=0.05 to determine the variance of each variable at different distances. Bar graphs with standard deviation bars were made for each variable in relation to the 3 distances from the ditch.
DOI: 10.6084/m9.figshare.16755514.v1
title: Data for "In vitro and in vivo NIR Fluorescence Lifetime Imaging with a time-gated SPAD camera"

description: Data, analysis scripts and logs
DOI: 10.6084/m9.figshare.8034662.v1
title: Supplementary Material for: No Difference in Prevalence of Transmitted Drug Resistance between Injection Drug Users and Non-Injection Drug Users: A Cross-Sectional Study among Antiretroviral Treatment-Naïve HIV Patients

description: <b><i>Objectives:</i></b> The epidemiological evidence is inconsistent about whether HIV-positive injection drug users (IDUs) are at higher risk of developing antiretroviral resistance than any other HIV-positive populations. This study aims to investigate and compare transmitted drug resistance (TDR) between IDUs and non-IDUs in Lingshan County, an HIV-hit region in Guangxi, China, where IDU and heterosexual transmission were the two dominant transmission routes and roughly equally contributed to the local HIV transmission. <b><i>Methods:</i></b> A cross-sectional study was conducted among newly diagnosed and antiretroviral-treatment (ART)-naïve HIV-1 patients from Lingshan County. The <i>pol</i> gene of HIV-1 from the individuals was sequenced followed by genotyping and TDR analysis. <b><i>Results:</i></b> Two dominant transmission routes, heterosexual contact and IDU, accounted for 49.2 and 45.9% of 183 HIV-1 infection cases, respectively. Three genotypes, including CRF08_BC (70.6%), CRF01_AE (24.4%), and CRF07_BC (5.0%), and three unique recombinant forms (1.6%), were identified. There was a significant difference in genotype distribution among the different transmission routes (<i>F</i> = 21.814, <i>p</i> &lt; 0.001). The overall TDR prevalence was 5.5%. There were no significant differences in TDR prevalence among the different transmission routes (<i>F</i> = 1.420, <i>p</i> = 0.439). <b><i>Conclusions:</i></b> Injection drug use has little impact on TDR prevalence compared with other routes of transmission.
DOI: 10.17632/46wbk2xfcb
title: Data For Ti-Zr-Nb

description: The experimantal data and the atomic mobility database for bcc Ti-Zr-Nb alloys.
DOI: 10.17632/jpznb28frb
title: Assessment of Heavy Metals in Nail colors

description: The dataset shows total chronic daily intake, Hazard Quotient, Hazard Index and Lifetime Cancer Risk
DOI: 10.6084/m9.figshare.3385789.v1
title: Modesto Aerial USGS Imagery from the Distributed Solar Photovoltaic Array Location and Extent Data Set

description: This collection of USGS Orthoimagery data contains the .tif images files and associated .xml metadata files for the Modesto, CA imagery data from the dataset:<br>Bradbury, Kyle; Saboo, Raghav; Malof, Jordan; Johnson, Timothy; Devarajan, Arjun; Zhang, Wuming; Collins, Leslie; Newell, Richard: Distributed Solar Photovoltaic Array Location and Extent Data Set for Remote Sensing Object Identification. figshare. https://dx.doi.org/10.6084/m9.figshare.3385780<br>Acknowledgement: Data available from the U.S. Geological Survey. See USGS Visual Identity System Guidance (https://www2.usgs.gov/visual-id/credit_usgs.html) for further details.
DOI: 10.7266/n7-f7x0-e478
title: Soil nitrification potential rates in marsh mesoscosms prior to oiling: July 2018-June 2019
DOI: 10.17632/978wyckk2t
title: Data for: Dithiothreitol (DTT) activity of different fractions of fresh and ozonised soot and quantitative contributions of ozonised products of phenanthrene
DOI: 10.17632/g4xg38mwcn
title: VoxHunt Expression Maps

description: 3D expression maps of the developing mouse brain of different ages derived from in situ hybridization experiments. This data was obtained from the Allen Brain Atlas and is a dependency of the VoxHunt R package.
DOI: 10.17632/t792k7f42b
title: Données brutes des protéines identifiées par spectrométrie de masse dans le protéome proximal de RipAA

description: Vous trouverez dans le fichier excel les données brutes de la spectrométrie de masse du protéome proximal de RipAA
DOI: 10.6084/m9.figshare.14566215.v2
title: Data of publication Wang et al under review GBC

description: Data of Figures and Tables organized in Excel
DOI: 10.6084/m9.figshare.16709095.v1
title: Typhoon_BVOC_O3_pollution

description: Typhoon-boosted biogenic emission aggravates cross-regional ozone pollution in China
DOI: 10.6084/m9.figshare.25602510.v1
title: <b>Exploring the Integration of Technology in English Language Teaching:</b><b>A Research Study</b>

description: This research explores technology integration in English language teaching (ELT) through a mixed-methods approach. It investigates how English language teachers perceive and practice technology integration in their classrooms and examines its impact on student engagement and learning outcomes.Using quantitative and qualitative methods, this research collected data from English language teachers at different levels of technology integration, ranging from low to high. Through surveys and interviews, we explored teachers' attitudes, challenges, successful instances, and visions for the future regarding technology integration.The quantitative analysis involved examining mean scores, mode, standard deviation, frequency, and percentages to identify trends and patterns in teachers' attitudes and perceptions toward technology integration. Meanwhile, the qualitative analysis provided rich insights into teachers' experiences, struggles, and strategies related to technology integration.This research aimed to identify convergence and divergence between teachers' perceptions and practices by synthesizing the quantitative and qualitative findings. This comprehensive approach allowed for a nuanced understanding of technology integration's complexities in ELT and its implications for student engagement and learning outcomes.Therefore, this research contributes to the existing literature by shedding light on the multifaceted nature of technology integration in English language teaching and providing insights for educators, policymakers, and researchers seeking to enhance technology integration practices in language education.
DOI: 10.6084/m9.figshare.28045295.v1
title: Renji endoscopic submucosal dissection video data set for early gastric cancer

description: Renji endoscopic submucosal dissection (ESD) video dataset for early gastric cancer (EGC), comprising 20 ESD endoscopic videos and 66,656 phase recognition annotations jointly annotated by three endoscopists.
DOI: 10.6084/m9.figshare.13650386.v1
title: Supplementary Material for: Surgical Management of Idiopathic Perianal Fistulas: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Perianal fistula is a common colorectal condition with an incidence of 9 per 100,000. Many surgical treatments exist, all aiming to eliminate symptoms with minimal risk of recurrence and impact upon continence. Despite extensive evaluation of the therapeutic modalities, no clear consensus exists as to what is the gold standard approach. This systematic review aimed to examine all available evidence pertaining to the surgical management of perianal fistulas. Primary outcomes examined were recurrence and incontinence. <b><i>Summary:</i></b> This study was conducted according to PRISMA guidelines. Primary outcomes were analyzed for each group and expressed as pooled odds ratio with confidence intervals of 95%. 687 studies were identified from which 28 relevant studies were included. There was no significant difference in rates of incontinence identified between various surgical approaches. Glues and plugs show higher recurrence rates. Newer treatments continue to emerge with promise but lack supporting evidence of benefit over conventional therapies. <b><i>Key Messages:</i></b> While we await more robust randomized data, we will continue to proceed cautiously trying to offset the benefits of fistula healing against the inherent risk of altered continence.
DOI: 10.6084/m9.figshare.19153574.v2
title: PLSDB 2021_06_23_v2

description: <code>PLSDB files from 2021_06_23_v2</code>
DOI: 10.6084/m9.figshare.28225490.v2
title: <b>S1 Appendix. </b><b>Effect of sample size on diversity and population structure analysis of</b><b> </b><b><i>Bromus auleticus</i></b><b> </b><b>employing ind-seq dataset</b>

description: <i>Bromus auleticus</i>, a valuable forage grass native to the Pampa biome, is currently suffering genetic erosion. Therefore, it is central to assess the appropriate methodologies for developing population genomic studies and contributing to the conservation of this plant genetic resource. This study evaluated five accessions using two genotyping strategies: individual sequencing (ind-seq) and pooled sequencing (pool-seq). To compare their efficacy, was investigated the correlation between allele frequencies calculated using each approach. Geneticdiversity and population structure were also analyzed using both methods. These comparisons explicitly accounted for the potential effects of one or more of the following parameters: sample size, missing data, sequencing depth, and minor allele frequencies. Notably, the highest concordance and percentage of common SNPs between ind-seq and pool-seq was achieved using 30 to 60 plants per accession, with a maximum missing data threshold of 10% and a more tolerant minimum allele frequency threshold for pool-seq (0.01) compared to ind-seq (0.05). Reaching maximum similarity in allele frequencies also required a higher sequencing depth for pool-seq (4.8 million reads-Mr) than for ind-seq (0.9 Mr). Pools of 50 individuals yielded the highest number of polymorphic sites, averaging over 9,000 across all accessions at a sequencing depth of 4.8 Mr. Under these conditions, pool-seq consistently yielded a means across all accessions of 0.09 higher expected heterozygosity and 0.24 lower allelic richness compared to ind-seq across all accessions. The population structure detected with both methodologies showed agreement, aligning with the outcrossing nature of <i>B. auleticus</i> and the geographical origin of each accession. The average inbreeding coefficient of 0.2 indicates signs of inbreeding, highlighting the importance of conservation efforts of this valuable plant genetic resource. Based on these findings, two workflows were proposed to carry out population genomics studies of <i>Bromus auleticus</i>.
DOI: 10.6084/m9.figshare.6931439.v1
title: Streptococcus pyogenes PopPUNK database

description: Database for assigning cluster ID to new S. pyogenes isolates.First extract:tar xf s_pyogenes.query_db.tar.bz2<br>Then assign new genomes:poppunk --assign-query --ref-db GAS_query --distances GAS_query/GAS_query.dists --model-dir GAS_query --q-files query.list --output GAS_assignment --threads 8<br><br>Where query.list is a list of the assemblies to assign<br>
DOI: 10.17632/283gy325fk
title: Data supporting 'Convergent somatic mutations in metabolism genes in chronic liver disease'

description: This is an RData file containing a data-frame of all somatic mutations (base substitutions and small indels) from the samples described in the paper: Stanley WK Ng et al, 'Convergent somatic mutations in metabolism genes in chronic liver disease'. Nature 2021; 598(7881): 473-478. ( http://dx.doi.org/10.1038/s41586-021-03974-6 ). 

The columns of the data-frame follow the usual VCF conventions for genome position numbering and describing the ref and alt entries. The 'id' column encodes the sample ID, followed by underscore, followed by the specific branch on the phylogenetic tree the mutation was assigned to (in order to avoid double-counting of mutations). the column 'vaf' contains the variant allele fraction of the mutation. The genome build for the position co-ordinates is GRCh37.
DOI: 10.17632/xrhfp865fh
title: Panel Dataset on "Ethical Culture and Financial Reporting Quality in Malaysian Small and Medium Enterprises"

description: This dataset presents a survey of the relationship between ethical culture and financial reporting quality among Malaysian small and medium enterprises (SMEs). The data was collected from November 2022 until February 2023. From the survey that has been sent to all the respondents, there are only 181 usable responses that can be used for the study. The survey was designed to gain owner-managers and accountants’ views on the relationship between ethical culture and financial reporting quality in SMEs.
DOI: 10.6084/m9.figshare.22263550.v1
title: CDS submission eye tracking data

description: This data set includes raw eye tracking data and specific calculation procedures of an algoroithm designed to discover the common scanpath of a group of viewers.
DOI: 10.6084/m9.figshare.25335043.v1
title: Simulation results of positioning algorithm based on space constraint

description: This data contains simulation data for different RSS-based positioning methods for VLP, including the LS algorithm, the NLS algorithm, and the newly proposed method. This data is referenced in our companion paper, "Positioning algorithm based on space constraint of the PD array in VLP system."
DOI: 10.6084/m9.figshare.29093453.v2
title: Validation of the Elastons Model through the Multi-Messenger Event S250206dm: A Unified Approach to Gravitational Waves and High-Energy Neutrinos

description: This dataset and article present the validation of the Elastons Model using the multi-messenger event S250206dm, combining gravitational wave and high-energy neutrino data. Numerical simulations demonstrate the coherence between theoretical predictions and observations, supporting the hypothesis that elastons are responsible for the detected neutrinos.
DOI: 10.17632/tjbbg9g9n3
title: Blood flow restricted walking in multiple sclerosis
DOI: 10.6084/m9.figshare.25366408.v1
title: WeiboText2017

description: This is a text data downloaded from Sina Weibo related to flood disasters.
DOI: 10.6084/m9.figshare.5975470.v1
title: Theoretical ribosomal protein mass fingerprint of Toxoplasma gondii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Toxoplasma gondii.</i><br><br><br>
DOI: 10.6084/m9.figshare.6462338.v3
title: The partial orginal data of Lake Gonghai

description: Sedimentary records of climate proxies from Lake Gonghai since last deglaciation to 7 ka BP. Including Pollen-based precipitation reconstruction from Gonghai lake; % tree pollen; % herb pollen; organic matter content; magnetic susceptibility; mean grain size; carbonate content. (Original reference: Chen, F. H., Xu, Q. H., Chen, J. H., Birks, H. J., Liu, J. B., Zhang, S. R., et al. (2015). East Asian summer monsoon precipitation variability since the last deglaciation. <i>Scientific Reports</i>, 5, 11186.)
DOI: 10.17632/76hjnxczz7
title: ProHD2 covariation

description: Covariation scores for ProHD2 and Complex portal intergration
DOI: 10.17632/vg89yxrx5t
title: Data for: Structural Topology Optimization of Tall Buildings for Dynamic Seismic Excitation Using Modal Decomposition

description: Additional Matlab files for the following publication: A Martin, GG Deierlein, "Structural Topology Optimization of Tall Buildings for Seismic Dynamic Excitation Using Modal Decomposition", Engineering Structures (submitted) The function files supplement the original PolyTop software developed by: C Talischi, GH Paulino, A Pereira, IFM Menezes, "PolyTop: A Matlab implementation of a general topology optimization framework using unstructured polygonal finite element meshes", Struct Multidisc Optim, DOI 10.1007/s00158-011-0696-x
DOI: 10.6084/m9.figshare.14459535.v4
title: Data and scripts in Huang et al. "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota"

description: This compressed file includes six folders:<br>1_single_protein_trees_of_orthologs:<br>Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota".<br>2_phylogenetic_trees_Woese&Pace:<br>Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs<br>3_16S_rRNA_gene:<br>Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis<br>4_individual_protein_trees:<br>Alignment and treefiles used in the phylogenetic analyses in fig.4, suppl. fig6-7, suppl. fig9-22 and suppl. fig24-41<br>5_protein_families_52_MAGs:<br>The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files<br>6_scripts<br>Python scripts used in phylogenetic analysis and R scripts used in ecological analysis<br>7_protein_files<br>Proteins faa files and annotation files
DOI: 10.6084/m9.figshare.15101667.v1
title: Raw SNP files and filtered rQTL files for each family

description: Following the dDocent pipeline, sequences were trimmed, mapped to the eastern oyster genome, SNPs were called using FreeBayes, and SNPs were filtered (reference the manuscript for details), individual sequences were separated into groups by family. Each family .vcf file was loaded into Onemap independently: FamX_raw.onemap.vcf files above. <br>After linkage map creation and marker ordering in Onemap, markers were thinned for downstream QTL mapping. The ordered, thinned marker files were then converted to Rqtl 4-way cross format for each family: FamX_thinned_bypos_rQTL.csv.
DOI: 10.6084/m9.figshare.19448219.v7
title: The China Plant Trait Database Version 2.0

description: Here we present version 2.0 of the China Plant Trait Database, which contains information on morphometric, physical, chemical, photosynthetic and hydraulic traits from 1529 unique species in 140 sites spanning a diversity of vegetation types. Version 2 has five improvements compared to the previous version: (1) new data from a 4-km elevation transect on the edge of Tibetan Plateau, including alpine vegetation types not sampled previously; (2) inclusion of traits related to hydraulic processes, including specific sapwood conductance, the area ratio of sapwood to leaf, wood density and leaf turgor loss point; (3) inclusion of information on soil properties to complement the existing data on climate and vegetation (4) assessments of the reliability of individual trait measurements; and (5) inclusion of standardized checklists and templates for systematical field sampling and measurements. See detailed descriptions here: Wang, H., Harrison, S.P., Li, M. <em>et al.</em> The China plant trait database version 2. <em>Sci Data</em> <strong>9</strong>, 769 (2022). https://doi.org/10.1038/s41597-022-01884-4<br>
DOI: 10.6084/m9.figshare.20043353.v3
title: Characterization of experimental cattle populations from Argentina with a low-density SNP genotyping panel

description: The folder includes: - raw SNP array data of 45 cattle samples from the Angus, Hereford and Argentinean Creole herds at Balcarce Station; - 25 cattle samples from the Argentinean Creole herd at the Leales Station; - 117 cattle samples from the Argentinean Hereford Association.
DOI: 10.6084/m9.figshare.20102240.v4
title: Mapeamento dos efeitos do Reiki para o tratamento do estresse, ansiedade e depressão: Revisão de Escopo

description: Protocolo para revisão de Escopo.
DOI: 10.6084/m9.figshare.2067414.v1
title: Coral Trait Database 1.1.1

description: Minor release of the Coral Trait Database public data and resource list.
DOI: 10.6084/m9.figshare.28538006.v1
title: uActivity

description: Trajectory-based dataset using IMU of the smartphone.